# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             peptides/protein_motifs.faa
# target HMM database:             /home/analysis/reflibs/hmmer3/pfam/26.0/pfam_a.hmm
# output directed to file:         pfam/pfam.hits
# per-seq hits tabular output:     pfam/pfam.hits.tbl
# prefer accessions over names:    yes
# max ASCII text line length:      unlimited
# number of worker threads:        4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MMETSP0890-20130614|4_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-18   65.6   0.0    4.2e-18   65.4   0.0    1.0  1  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   3.1e-22   4.2e-18       2      62 ..       9      68 ..       8      69 .] 0.96

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 3.1e-22
                HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTE CS
  PF02469.17  2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHv 62
                ++st+v+++e+a+la++L + +g++TvFaPtn+Af++lp ++l++ll+d ++l+++L+yHv
     MMETSP0890-20130614|4_1  9 DLSTLVTAVETADLADTL-SGDGPFTVFAPTNDAFDALPDGLLDSLLADTAALTDVLLYHV 68
                79****************.777**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.32s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 271.06
//
Query:       MMETSP0890-20130614|6_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-08   31.7   0.1    1.3e-05   24.8   0.0    2.1  2  PF00466.15 Ribosomal protein L10


Domain annotation for each model (and alignments):
>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.9e-10   1.3e-05       1      93 [.       4      97 ..       4     102 .. 0.92
   2 !    5.2   0.0    0.0013        17      29      73 ..     147     188 ..     124     194 .] 0.81

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 9.9e-10
                --HHHHHHHHHHHHHHHCTTSEEEEE------HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..--GGGG---EEEEEE..---THHHHH CS
  PF00466.15  1 ktkekKeelvkelkellkkyssvlvvdydgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeeklkellkgptalift..nedpvelak 93
                + +++++++++  + llk+ s+++v+++++ +   ++  R+e+    + lk + nt+  +Ale+ +    l  l++g+t++++   +edp+++ak
     MMETSP0890-20130614|6_1  4 MGRARRQAILDYARVLLKEKSVLAVATFTKGDIVTMTRTRNEFLARRIALKKIPNTICYKALEDCDRR-FLRTLFVGQTIIVYPleDEDPTQIAK 97
                56899999***********************************8888*****************7775.4*************888999999998 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0013
                 ----HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..--GG CS
  PF00466.15  29 dgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeeklke 73 
                 +   v+ + +lR  l ++ ++++ + n+ + rAl  ++e+  l++
     MMETSP0890-20130614|6_1 147 KSQAVTAFRTLRAPLLSA-GRIFSAPNKRIGRALTARKEK--LSD 188
                 55667888999*****99.***************999885..555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 588.47
//
Query:       MMETSP0890-20130614|11_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    7.5  35.7    1.4e+04  -13.6  24.7    4.0  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.6  24.7         1   1.4e+04       1      32 [.      28      62 ..       2      75 .] 0.77

  Alignments for each domain:
  == domain 1    score: -13.6 bits;  conditional E-value: 1
  PF04886.7  1 qpTaqPteqP.TvqPTg..qPtaqPTdqPtaqPtd 32
               ++Ta+Pt  P T +PT   +P+a PT+ P+ +Pt+
   MMETSP0890-20130614|11_1 28 PTTAAPTVSPsTYAPTTlyAPSAVPTSVPSYSPTT 62
               57777777774457775557777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.97
# Mc/sec: 185.29
//
Query:       MMETSP0890-20130614|25_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.31s 00:00:00.62 Elapsed: 00:00:00.92
# Mc/sec: 179.73
//
Query:       MMETSP0890-20130614|28_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-21   73.4   7.4    1.5e-10   40.4   0.4    3.0  3  PF00514.18 Armadillo/beta-catenin-like repeat
    4.8e-05   23.4   3.8      8e-05   22.7   2.6    1.4  1  PF13646.1  HEAT repeats
      0.002   18.5   4.5     0.0034   17.7   0.4    2.3  2  PF13513.1  HEAT-like repeat
     0.0069   16.3   1.9        2.2    8.2   0.1    2.2  2  PF14459.1  Prokaryotic E2 family C
     0.0096   14.9   0.2      0.021   13.8   0.1    1.5  1  PF04826.8  Armadillo-like
  ------ inclusion threshold ------
      0.044   13.7   0.6       0.74    9.9   0.0    2.4  3  PF02985.17 HEAT repeat
      0.048   12.8   0.0      0.053   12.7   0.0    1.1  1  PF12348.3  CLASP N terminal
      0.049   13.5   0.5        6.9    6.7   0.0    2.5  2  PF13876.1  Phage protein (N4 Gp49/phage Sf6 gene 66) family


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.5     5e-05     0.086      17      40 ..       1      24 [.       1      25 [. 0.95
   2 !   40.4   0.4   8.6e-14   1.5e-10       2      41 .]      27      66 ..      26      66 .. 0.94
   3 !   23.8   0.0   1.5e-08   2.5e-05       1      32 [.      67      98 .]      67      98 .] 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-05
                HHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18 17 LvqLLksgdeevqeeAawALsNLa 40
                L++LL+sg    +e+Aa+AL+ La
    MMETSP0890-20130614|28_1  1 LIALLSSGTATAKENAAAALWGLA 24
                89*******************987 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 8.6e-14
                HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41
                  n  a+ + Ga+ppL++LL+sg    +e+Aa+AL+NLaa
    MMETSP0890-20130614|28_1 27 VNNQIAIANDGAIPPLIDLLSSGTATAKENAATALWNLAA 66
                56889999******************************96 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 1.5e-08
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeA 32
                + +nk a+ +aGa++pL++LL+sg    +e+A
    MMETSP0890-20130614|28_1 67 NADNKIAIADAGAIRPLIALLSSGTATAKENA 98
                679********************988888887 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.6   4.7e-08     8e-05       4      75 ..       1      91 [.       1      98 [] 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.7e-08
  PF13646.1  4 LlaaLekdpdpevraaaieaLg..........qlgseealpaLlelLkdsdpevRraAaeaLgkl..........gdpealpaLlkllddde 75
               L+a+L ++  +  +++a+ aL            ++++ a+p+L++lL++  +  +++Aa aL +l          +d  a+++L+ ll + +
   MMETSP0890-20130614|28_1  1 LIALL-SSGTATAKENAAAALWglavnvnnqiAIANDGAIPPLIDLLSSGTATAKENAATALWNLaanadnkiaiADAGAIRPLIALLSSGT 91
               67777.8888888998888888888*99998888999*************************999555444444448889999999887754 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4     2e-06    0.0034       5      52 ..      17      61 ..      13      61 .. 0.90
   2 ?    5.4   0.4     0.015        26       6      46 ..      59      96 ..      55      98 .] 0.69

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2e-06
  PF13513.1  5 raAawaLGrlaggeprllepavpellpaLlelLeddddeVReaAawAL 52
               +aA+w+L+   ++  ++++ a++ ++p+L++lL++  +  +e+Aa AL
   MMETSP0890-20130614|28_1 17 AAALWGLA---VNVNNQIAIANDGAIPPLIDLLSSGTATAKENAATAL 61
               68999**6...**********************8877788*****998 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.015
  PF13513.1  6 aAawaLGrlaggeprllepavpellpaLlelLeddddeVRe 46
                A+w L+   +++++ ++ a   ++ +L++lL++  +  +e
   MMETSP0890-20130614|28_1 59 TALWNLA---ANADNKIAIADAGAIRPLIALLSSGTATAKE 96
               5788886...7778888888888888888888654444455 PP

>> PF14459.1  Prokaryotic E2 family C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0013       2.2      30      63 ..       2      37 ..       1      40 [. 0.80
   2 !    8.1   0.1    0.0014       2.4      28      65 ..      41      80 ..      37      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0013
  PF14459.1 30 lailplgsaask..qakalerlaksinekigirrsg 63
               +a+l +g a+ k   a al  la  +n++i+i+  g
   MMETSP0890-20130614|28_1  2 IALLSSGTATAKenAAAALWGLAVNVNNQIAIANDG 37
               7899999876541157899*************9988 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0014
  PF14459.1 28 pvlailplgsaask..qakalerlaksinekigirrsgks 65
               p + +l +g a+ k   a al +la   ++ki+i+ +g  
   MMETSP0890-20130614|28_1 41 PLIDLLSSGTATAKenAATALWNLAANADNKIAIADAGAI 80
               78889999987654126899***************99975 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.2e-05     0.021      20      91 ..       4      74 ..       1      77 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
  PF04826.8 20 llestedpliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqkki 91
               ll s+   + +e a  +l   a+   nq  i + g ip + +lls+  ++ ke+a  al nl+ n++n+  i
   MMETSP0890-20130614|28_1  4 LL-SSGTATAKENAAAALWGLAVNVNNQIAIANDGAIPPLIDLLSSGTATAKENAATALWNLAANADNKIAI 74
               44.556677788999999999999999*9**************************************98766 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.17   2.8e+02       5      28 ..       1      24 [.       1      27 [. 0.80
   2 ?    9.9   0.0   0.00043      0.74       2      29 ..      39      66 ..      38      68 .. 0.93
   3 ?   -2.7   0.0         5   8.5e+03       5      11 ..      83      89 ..      80      96 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.17
                HHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17  5 llkllnDpspeVReaAaeaLgala 28
                l+ ll++ ++  +e+Aa aL  la
    MMETSP0890-20130614|28_1  1 LIALLSSGTATAKENAAAALWGLA 24
                567888888889999999997665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00043
                HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17  2 lPlllkllnDpspeVReaAaeaLgalae 29
                +P+l+ ll++ ++  +e+Aa+aL +la 
    MMETSP0890-20130614|28_1 39 IPPLIDLLSSGTATAKENAATALWNLAA 66
                8**********************99986 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 5
                HHHHHTS CS
  PF02985.17  5 llkllnD 11
                l+ ll++
    MMETSP0890-20130614|28_1 83 LIALLSS 89
                5666654 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05     0.053      67     131 ..      10      72 ..       1      79 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-05
  PF12348.3  67 ttlsstachllkelaiqlkhqldpmveillptLlkllgdtkkiisqnanqaladllenasftsrl 131
                 t   +a   l  la   ++q++   +  +p L++ll++ +  + +na++al  l +na   +++
   MMETSP0890-20130614|28_1  10 ATAKENAAAALWGLAVNVNNQIAIANDGAIPPLIDLLSSGTATAKENAATALWNLAANAD--NKI 72 
                4556678888999**********************************************9..777 PP

>> PF13876.1  Phage protein (N4 Gp49/phage Sf6 gene 66) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.017        30      56      71 ..       8      23 ..       6      27 .. 0.90
   2 ?    6.7   0.0     0.004       6.9      55      72 ..      48      65 ..      46      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.017
  PF13876.1 56 GrkiArenavnkiweL 71
               G+ +A+ena   +w L
   MMETSP0890-20130614|28_1  8 GTATAKENAAAALWGL 23
               999***********88 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.004
  PF13876.1 55 iGrkiArenavnkiweLe 72
                G+ +A+ena   +w+L 
   MMETSP0890-20130614|28_1 48 SGTATAKENAATALWNLA 65
               5999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:01.00
# Mc/sec: 234.84
//
Query:       MMETSP0890-20130614|27_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-47  160.9   1.0    6.5e-41  140.1   0.0    2.3  2  PF04840.7  Vps16, C-terminal region
    4.4e-42  143.9   0.0    6.3e-42  143.4   0.0    1.2  1  PF04841.8  Vps16, N-terminal region
     0.0012   18.3   0.0     0.0022   17.5   0.0    1.4  1  PF04056.9  Ssl1-like
  ------ inclusion threshold ------
      0.024   14.1   0.6      0.074   12.6   0.0    2.1  2  PF08279.7  HTH domain
       0.14   11.7   0.0       0.59    9.7   0.0    2.0  2  PF01978.14 Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> PF04840.7  Vps16, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.7e-07   0.00046       6      63 ..     362     421 ..     359     430 .. 0.88
   2 !  140.1   0.0   2.4e-44   6.5e-41     118     306 ..     454     646 ..     442     660 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.7e-07
  PF04840.7   6 iArrAyqagrleLarkllelEk.raeeqvelLlkled.vsaAlkkaiesqdteLiiqvll 63 
                +A+ A +agr+ La +ll  E+  ++eqv +L  l++ +++A++kai++ dt+ + + +l
   MMETSP0890-20130614|27_1 362 AASAARDAGRMYLALQLLASEPfPSQEQVIVLASLQNtDKLAIRKAIDTLDTDVVSYAIL 421
                7999*****************945789********862678*************998776 PP

  == domain 2    score: 140.1 bits;  conditional E-value: 2.4e-44
  PF04840.7 118 lqqaletkeveerlsaLksakdaysqvknkeleeklledqlkllrlQktledkfavs.fadlsvdetvvkLiligq...tkraeklrkdfkipdkrllwlkikaLaekkkweeleklakSkkSPIGYePFvevllkqkn.ldeakkYiarvstqekvklylevkdfkeAaelAaeerdesvLkevlehvksaed 306
                lq+a+ +   ++r+  Lksa   + +  ++++ +k++e+q+ llr+Q  le++f+ + f+d+s+ et+ +Li  ++   t +a kl++ fk p+k+++++ki+aLa+ +++e l k+a  kkSPIGY+PF++++l++++ l+  ++Yiar+  +e+  +yl+++ +++A ++A+  rd s L ++++  + a++
   MMETSP0890-20130614|27_1 454 LQKAYGSPLLNQRIDHLKSALTSFTNNTEQAFFAKAIEEQIDLLRIQTELEHRFQLKcFLDMSLAETLYNLIALNNpqaTSEALKLQRRFKFPEKHFYYIKIQALAASGQFEALTKFAAEKKSPIGYTPFINACLQHGQtLHHCQQYIARLPLHERFPFYLQLGAWNQALDVAYRTRDPSLLDDIQRA-AAADP 646
                67777778889********************************************8669*************9886333678999**************************************************99763799******************************************654.44444 PP

>> PF04841.8  Vps16, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   2.3e-45   6.3e-42     216     405 ..      63     257 ..      30     264 .. 0.92

  Alignments for each domain:
  == domain 1    score: 143.4 bits;  conditional E-value: 2.3e-45
  PF04841.8 216 nekvvkisvsdnrrhlalytetgkillisvdlskklleleldakdipkqiaWvgndaVvvsfesllvlvgkagdsvqflydetanlsaEvDGvriltkssveflrrvpaasenifaigskePgalLveaqkklee.....ksskadeiLkeikdklekavddCieaaldefqpelQKlLLraAsfGkaflrnknp 405
                   ++++++ +n r++a yt  g + ++s+++ +k l++++    +p q+ W+g d++++++++ l+++g++g+ +++ yd    l +E D  ri++k + e+l+rvpa++e i +igs++ +a+L++a +  ++     + +kade ++ + + l  a+++ ++aal ef p  Q l LraAs+Gk+f ++ + 
   MMETSP0890-20130614|27_1  63 AAPIIQLAIAPNGRFVACYTAAGLLTVMSTSFTTKVLDFDTASSVPPLQMFWCGEDSILLNWPNFLLMIGPFGHWIKYNYDLPRCLIPETDSCRIVSKYTCELLQRVPATVETIHRIGSTDLAAMLYDAIEAQNDqgqnlQDPKADENIRSLVNDLPTAISTILQAALAEFDPRAQQLYLRAASYGKNFCQMPTN 257
                35699***************************************************************************************************************************998887777788999********9999**********************************998654 PP

>> PF04056.9  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.9e-07    0.0022      92     172 ..     378     457 ..     349     473 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.9e-07
  PF04056.9  92 sLkkvpshasrevliifsslstcDPgdiyetidelkkekirvsvigLsaevavckelaketkgtysvvldethlkellleh 172
                 L +   + s+e +i+++sl  +D   i + id+l ++ +   ++  + + +  k la++t++ ++ +++ + l   l+++
   MMETSP0890-20130614|27_1 378 LLAS-EPFPSQEQVIVLASLQNTDKLAIRKAIDTLDTDVVSYAILNNALDDHTIKPLAQKTRAYFTSAVQSDGLPSTLQKA 457
                4433.3477899*****************************************************9999998887777765 PP

>> PF08279.7  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05     0.074       4      29 ..     305     330 ..     303     336 .. 0.88
   2 ?   -3.4   0.1       2.6     7e+03      31      40 ..     403     412 ..     403     415 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.7e-05
  PF08279.7   4 qilelLlqarepvsgeeLAeeLnVSr 29 
                +i ++Llq +e+ +++ +Ae+L+V r
   MMETSP0890-20130614|27_1 305 RIFQRLLQRQEYTTASAIAEYLGVPR 330
                799***9****************955 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.6
  PF08279.7  31 tirrdIkaLe 40 
                +ir+ I++L 
   MMETSP0890-20130614|27_1 403 AIRKAIDTLD 412
                79*****996 PP

>> PF01978.14  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.96   2.6e+03      17      30 ..     165     178 ..     163     181 .. 0.89
   2 ?    9.7   0.0   0.00021      0.59      12      39 ..     305     333 ..     296     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.96
  PF01978.14  17 Llkkgpatadeiae 30 
                 Ll++ pat+++i++
    MMETSP0890-20130614|27_1 165 LLQRVPATVETIHR 178
                 999*********87 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00021
  PF01978.14  12 kvYlaLl.kkgpatadeiaeelgvprskv 39 
                 ++++ Ll +++  ta+ iae lgvpr k+
    MMETSP0890-20130614|27_1 305 RIFQRLLqRQEYTTASAIAEYLGVPRDKI 333
                 58999997888899*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.06u 0.40s 00:00:01.46 Elapsed: 00:00:01.22
# Mc/sec: 1312.10
//
Query:       MMETSP0890-20130614|24_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.002   17.6   0.0     0.0022   17.5   0.0    1.3  1  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-07    0.0022      18      50 ..      15      47 ..       3      59 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.6e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Ld+++p++l n+ w+++ 
    MMETSP0890-20130614|24_1 15 APALFNAIADAALTKLDGFKPQELANTTWAFAT 47
                6789**************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.73
# Mc/sec: 203.53
//
Query:       MMETSP0890-20130614|15_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.9    7.4  10.3         17    4.9   0.1    3.4  3  PF12197.3  Bacillus cereus group antimicrobial protein


Domain annotation for each model (and alignments):
>> PF12197.3  Bacillus cereus group antimicrobial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4    0.0059        81      18      39 ..     266     285 ..     264     287 .. 0.75
   2 ?    4.6   0.3    0.0016        21      19      38 ..     340     357 ..     338     363 .. 0.75
   3 ?    4.9   0.1    0.0013        17      18      41 ..     388     409 ..     387     412 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0059
  PF12197.3  18 qdgttwylKgkyydnskgtwva 39 
                +d t wy Kg    + +  wv+
   MMETSP0890-20130614|15_1 266 DDSTSWYKKGD--TSKNCIWVG 285
                78899*****9..444456776 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0016
  PF12197.3  19 dgttwylKgkyydnskgtwv 38 
                d ttwy Kg    + +  wv
   MMETSP0890-20130614|15_1 340 DSTTWYKKGD--TSKSCSWV 357
                779******9..44445565 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0013
  PF12197.3  18 qdgttwylKgkyydnskgtwvafY 41 
                +d+t wy Kg      +  wv  Y
   MMETSP0890-20130614|15_1 388 LDDTNWYKKGD--TQKNCAWVSTY 409
                59********9..34445687776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       871  (0.0637068); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                       132  (0.00965477); expected 13.7 (0.001)
Passed Fwd filter:                        90  (0.0065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.68u 0.29s 00:00:01.97 Elapsed: 00:00:02.23
# Mc/sec: 470.67
//
Query:       MMETSP0890-20130614|29_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-25   88.8   2.6    1.4e-24   87.0   1.8    2.0  1  PF01734.17 Patatin-like phospholipase
  ------ inclusion threshold ------
      0.021   14.8   1.0       0.33   11.0   0.1    2.9  3  PF03958.12 Bacterial type II/III secretion system short domain


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   1.8     2e-28   1.4e-24       1     204 []     107     289 ..     107     289 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 2e-28
  PF01734.17   1 LvlsGGGtrGafslgalka...L.kkelgdrfdiisGtSaGaiiaallalgrdpaalvedlrelllnkffdrdllirelaanlaarlsgllgpgglfdaealrellr.......kvlgdltlkrlsarlgklpllkslataaqavpaittataasastantanslytedded.dvpladavraSsafPglfppvsldgelyvDGGildNnPilaal 204
                 ++++GGG+rG++ l +++      + +  ++fd ++GtS+Gaiiaa la +  p a+v++ ++ l++++f +         +l a  +g + +  l  +  +++ l+       +vl                         + ++   t t ++   +n+ ++l ++dd++ d++l+da++aS+a+P++fp+v+   ++++DG+++ NnP+l+al
    MMETSP0890-20130614|29_1 107 ICIDGGGARGVVPLAIMQQaeqRcQSRVREKFDFFAGTSTGAIIAAGLAIAELPTAIVDAAYRDLARLIFGSR--------GLSASQRGKRLKAVLSAVFGAESKLKqstshsrRVL-------------------------FVATDASTSTLRPLVLRNYRRGLDPDDDYEsDMRLVDALLASAAAPPYFPAVEKSRRKLLDGALVANNPTLVAL 289
                 69*****************6651699***********************************************........666666666666666666666666663333332222.........................3345556666666677788888777777767****************************************996 PP

>> PF03958.12  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   1.3e+03      42      70 ..      43      71 ..      36      72 .. 0.81
   2 ?   -0.4   0.0      0.17   1.2e+03      14      32 ..     190     219 ..     175     304 .. 0.68
   3 ?   11.0   0.1   4.8e-05      0.33      18      60 ..     439     509 ..     429     512 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.19
                --SSS-EE-------EEE---HHHHHHHH CS
  PF03958.12 42 lgkrgrvvadprtNsllvrgtpervarir 70
                l  +g++ a +++N++   ++pe+  rir
    MMETSP0890-20130614|29_1 43 LPRGGSLHALVASNAITDDDSPEYFVRIR 71
                56788999********9999988876665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.17
                 HHHHH----..................... CS
  PF03958.12  14 lasiLrellgggggesas...........s 32 
                 l ++L++++g++++ ++s           +
    MMETSP0890-20130614|29_1 190 LKAVLSAVFGAESKLKQStshsrrvlfvaT 219
                 788899999887766554444444444440 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 4.8e-05
                 H----..............................................---SSS-EE-------EEE- CS
  PF03958.12  18 Lrellgggggesas............................sgassqsgallgkrgrvvadprtNsllvr 60 
                 L+ l g+ ++++ s                            ++++++++++++++g+++ +p++ +++v 
    MMETSP0890-20130614|29_1 439 LSPLHGSPSSTTHSsttlrslrkrtakltgmhgffsgkktnrNPKEDDTSSSSSSGGTITTYPSSSAVVVV 509
                 5555555555555566777777777777778888888888999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:01.29
# Mc/sec: 975.26
//
Query:       MMETSP0890-20130614|30_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-23   79.7   0.1      1e-22   79.5   0.1    1.0  1  PF08373.5  RAP domain
  ------ inclusion threshold ------
       0.06   13.2   0.0       0.06   13.2   0.0    1.2  1  PF01152.16 Bacterial-like globin


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.1   1.5e-26     1e-22       1      57 [.       4      63 ..       4      64 .. 0.92

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 1.5e-26
  PF08373.5  1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57
               ie+dGpth++++  ++ l  g+tk+K riL++lGw vi++pyfeWn l +   k  Yl++
   MMETSP0890-20130614|30_1  4 IEVDGPTHYLKRKgEQRLenGHTKFKSRILRQLGWTVIHVPYFEWNALTDVAAKDSYLQS 63
               9************55555******************************99999999**87 PP

>> PF01152.16  Bacterial-like globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.8e-06      0.06      53      76 ..       6      29 ..       2      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.8e-06
                -----HHHHH-----HHHHHTTS- CS
  PF01152.16 53 lGGPkeYserkGhPrlrerHaple 76
                ++GP +Y +rkG  rl++ H +++
    MMETSP0890-20130614|30_1  6 VDGPTHYLKRKGEQRLENGHTKFK 29
                68******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.90
# Mc/sec: 181.06
//
Query:       MMETSP0890-20130614|34_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-15   55.2   8.7    3.2e-06   26.5   0.1    3.9  4  PF13516.1  Leucine Rich repeat
    2.4e-09   36.4   6.7    2.5e-07   30.0   1.1    2.4  2  PF12799.2  Leucine Rich repeats (2 copies)
    1.5e-07   30.3   0.4        0.2   11.6   0.1    3.2  3  PF00560.28 Leucine Rich Repeat
    2.3e-05   23.7   1.6        2.9    8.3   0.1    3.4  3  PF13504.1  Leucine rich repeat
    4.9e-05   22.8   5.9     0.0056   16.2   3.6    2.7  1  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.054   13.8   0.0         62    4.2   0.0    3.1  3  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.52   1.2e+03      17      23 ..       2       8 ..       1       9 [. 0.87
   2 !   20.2   0.1   1.5e-07   0.00034       1      23 [.      14      36 ..      14      37 .. 0.94
   3 !   26.5   0.1   1.4e-09   3.2e-06       1      23 [.      42      64 ..      42      65 .. 0.95
   4 !   11.2   0.2   0.00012      0.27       1      16 [.      70      85 ..      70      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.52
  PF13516.1 17 eGlsaLa 23
               eG++aLa
   MMETSP0890-20130614|34_1  2 EGAKALA 8 
               8*****8 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.5e-07
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L++L+L  N+ig+eG+ a++
   MMETSP0890-20130614|34_1 14 NTSLQELNLYTNKIGNEGAIAIG 36
               789****************9997 PP

  == domain 3    score: 26.5 bits;  conditional E-value: 1.4e-09
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L+ L Ls+N+igdeG++aLa
   MMETSP0890-20130614|34_1 42 NTSLQKLWLSSNNIGDEGAKALA 64
               689*******************8 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00012
  PF13516.1  1 lknLtsLdLsnNqigd 16
               +++L+ LdL +N+i +
   MMETSP0890-20130614|34_1 70 NTSLQRLDLEHNNIKG 85
               789**********954 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2   0.00034      0.77      20      38 ..      11      29 ..       5      39 .. 0.85
   2 !   30.0   1.1   1.1e-10   2.5e-07       1      37 [.      43      84 ..      43     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00034
  PF12799.2 20 lanLpnLktLnLsnNpisd 38
               l+  ++L++LnL  N+i +
   MMETSP0890-20130614|34_1 11 LGTNTSLQELNLYTNKIGN 29
               78889**********9975 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.1e-10
  PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpis 37
               t+L++L+Ls+NnI d     l   la  ++L+ L+L++N+i 
   MMETSP0890-20130614|34_1 43 TSLQKLWLSSNNIGDegakaLATALATNTSLQRLDLEHNNIK 84
               79***********87676666555****************96 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.005        11       1      13 [.      16      28 ..      16      41 .. 0.82
   2 !    9.3   0.0   0.00052       1.2       1      13 [.      44      56 ..      44      67 .. 0.88
   3 !   11.6   0.1   8.8e-05       0.2       1      15 [.      72      87 ..      72      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.005
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L+eL+L  N++ 
    MMETSP0890-20130614|34_1 16 SLQELNLYTNKIG 28
                79********997 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00052
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++L Ls+Nn+ 
    MMETSP0890-20130614|34_1 44 SLQKLWLSSNNIG 56
                79*********97 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 8.8e-05
                TESEEEETSSBCB.CH CS
  PF00560.28  1 nLeeLdLsgNnlt.sl 15
                +L++LdL +Nn++ +l
    MMETSP0890-20130614|34_1 72 SLQRLDLEHNNIKgNL 87
                79**********8664 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.014        31       1      13 [.      15      27 ..      15      32 .. 0.87
   2 !    7.7   0.0     0.002       4.6       1      14 [.      43      56 ..      43      60 .. 0.89
   3 !    8.3   0.1    0.0013       2.9       1      14 [.      71      84 ..      71      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.014
  PF13504.1  1 pnLkeLdLsgnrL 13
               ++L+eL+L  n++
   MMETSP0890-20130614|34_1 15 TSLQELNLYTNKI 27
               69******99987 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.002
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++L++L Ls+n++ 
   MMETSP0890-20130614|34_1 43 TSLQKLWLSSNNIG 56
               69*********985 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0013
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++L++LdL +n+++
   MMETSP0890-20130614|34_1 71 TSLQRLDLEHNNIK 84
               69*********986 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.6   2.5e-06    0.0056       2      61 .]      16      83 ..      15      83 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.5e-06
  PF13855.1  2 nLkeLdLsnNrlkvi....pdgaFkglsnLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61
               +L+eL+L  N++ +       +a++  ++L++L Ls+nn+        + a++  +sL+ L+L++N++
   MMETSP0890-20130614|34_1 16 SLQELNLYTNKIGNEgaiaIGRALGTNTSLQKLWLSSNNIGdegaKALATALATNTSLQRLDLEHNNI 83
               6777777766666542223347788889************5333344566799999**********98 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.027        62       1      15 [.      16      30 ..      16      34 .. 0.87
   2 ?    3.1   0.0      0.06   1.4e+02       1      15 [.      44      58 ..      44      60 .. 0.85
   3 ?    2.9   0.0     0.067   1.5e+02       1      16 [.      72      87 ..      72      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.027
  PF07723.8  1 sLKtLhLdsvdfddd 15
               sL  L+L+++++ ++
   MMETSP0890-20130614|34_1 16 SLQELNLYTNKIGNE 30
               7999*******9998 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.06
  PF07723.8  1 sLKtLhLdsvdfddd 15
               sL +L L+s+ + d+
   MMETSP0890-20130614|34_1 44 SLQKLWLSSNNIGDE 58
               899*******99666 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.067
  PF07723.8  1 sLKtLhLdsvdfddde 16
               sL  L L+++ +++  
   MMETSP0890-20130614|34_1 72 SLQRLDLEHNNIKGNL 87
               8999******999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:01.22
# Mc/sec: 214.10
//
Query:       MMETSP0890-20130614|40_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-12   47.2   0.1    1.4e-12   47.2   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    9.7e-08   31.5   0.0      0.002   17.8   0.0    2.2  2  PF13374.1  Tetratricopeptide repeat
    2.7e-07   29.7   6.7    5.2e-05   22.5   0.2    2.4  2  PF00515.23 Tetratricopeptide repeat
    5.6e-07   28.7   0.1     0.0029   17.1   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.2e-06   27.9   1.8    7.8e-06   25.3   1.4    1.9  1  PF13414.1  TPR repeat
    2.7e-06   26.6   2.5    0.00012   21.5   0.0    2.2  2  PF13181.1  Tetratricopeptide repeat
    9.8e-06   24.9   5.2      0.035   13.8   0.3    2.3  3  PF07719.12 Tetratricopeptide repeat
    1.6e-05   24.6   1.1      0.051   13.6   0.3    2.5  2  PF13431.1  Tetratricopeptide repeat
    6.4e-05   23.1   0.1       0.08   13.5   0.1    2.2  2  PF13428.1  Tetratricopeptide repeat
    0.00036   20.6   0.5       0.99    9.8   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
     0.0005   20.5   0.1       0.29   11.7   0.0    1.8  2  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.051   13.3   0.1       0.21   11.3   0.0    1.7  2  PF11846.3  Domain of unknown function (DUF3366)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   1.3e-15   1.4e-12       8      73 ..       9      75 ..       2      76 .] 0.93

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.3e-15
  PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                 +la +l+++g+ deA+ +y  a++   ++l +++pd++  l+nla l+  +g+yd+A++++e Al
   MMETSP0890-20130614|40_1  9 RKYLAKLLKAQGKDDEAQRHYDIAIKTqKKKLDPNSPDYVADLLNLASLFKDKGNYDKAKPHYECAL 75
               569************************999**********************************998 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00013      0.15       8      42 .]      12      46 ..       7      46 .. 0.93
   2 !   17.8   0.0   1.7e-06     0.002       5      29 ..      51      75 ..      49      76 .] 0.94

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00013
  PF13374.1  8 LAlalrargryeeAlaleeealairrrllGddHPd 42
               LA +l a+g+ +eA +++  a  ++++ l ++ Pd
   MMETSP0890-20130614|40_1 12 LAKLLKAQGKDDEAQRHYDIAIKTQKKKLDPNSPD 46
               999***************99999999999999998 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.7e-06
  PF13374.1  5 lnnLAlalrargryeeAlaleeeal 29
               l nLA ++ + g+y++A +++e al
   MMETSP0890-20130614|40_1 51 LLNLASLFKDKGNYDKAKPHYECAL 75
               56*********************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.5   0.00025      0.28       6      29 ..      11      34 ..       8      39 .. 0.90
   2 !   22.5   0.2   4.6e-08   5.2e-05       4      28 ..      51      75 ..      49      76 .] 0.95

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00025
                HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23  6 nlGnaylklgkydeAleyyekALe 29
                 l+ ++  +gk deA  +y+ A++
    MMETSP0890-20130614|40_1 11 YLAKLLKAQGKDDEAQRHYDIAIK 34
                7999****************9998 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 4.6e-08
                HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekAL 28
                l nl+ ++  +g+yd+A  +ye AL
    MMETSP0890-20130614|40_1 51 LLNLASLFKDKGNYDKAKPHYECAL 75
                67**********************9 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0006      0.68       4      28 ..      11      35 ..      10      45 .. 0.81
   2 !   17.1   0.0   2.5e-06    0.0029       2      23 ..      51      72 ..      51      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0006
  PF13176.1  4 nLarlysrlgdyekAielyeraLal 28
               +La+l  ++g+ ++A ++y  a++ 
   MMETSP0890-20130614|40_1 11 YLAKLLKAQGKDDEAQRHYDIAIKT 35
               79*****************995544 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.5e-06
  PF13176.1  2 llnLarlysrlgdyekAielye 23
               llnLa+l+ + g+y+kA  +ye
   MMETSP0890-20130614|40_1 51 LLNLASLFKDKGNYDKAKPHYE 72
               89***************99998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   1.4   6.8e-09   7.8e-06      10      65 ..      13      75 ..      10      76 .] 0.85

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 6.8e-09
  PF13414.1 10 GnalfkegdydeAieayekAle.....ldpnnae...lyynlAlaylklgkdyeeAledyekAl 65
               +  l  +g+ deA ++y+ A++     ldpn+++    ++nlA ++  +g +y++A  +ye Al
   MMETSP0890-20130614|40_1 13 AKLLKAQGKDDEAQRHYDIAIKtqkkkLDPNSPDyvaDLLNLASLFKDKG-NYDKAKPHYECAL 75
               6667789**************75555589**999777789**********.7********9776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.017        20       7      30 ..      12      35 ..       8      39 .. 0.88
   2 !   21.5   0.0     1e-07   0.00012       4      25 ..      51      72 ..      48      75 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.017
               ---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  7 lGdiYrqlGdydkAkeylekalel 30
               l+++++  G+ d+A  ++  a++ 
   MMETSP0890-20130614|40_1 12 LAKLLKAQGKDDEAQRHYDIAIKT 35
               89999*************999985 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 1e-07
               TTT---HHHHTT-HHHHHHHHH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeyle 25
               ++nl+++++++G+ydkAk ++e
   MMETSP0890-20130614|40_1 51 LLNLASLFKDKGNYDKAKPHYE 72
               689******************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   3.1e-05     0.035       6      29 ..      11      34 ..       8      38 .. 0.91
   2 ?   -3.1   0.0         8   9.2e+03      29      33 ..      39      43 ..      39      44 .. 0.82
   3 !   13.5   0.1     4e-05     0.046       4      25 ..      51      72 ..      48      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.1e-05
                HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  6 nlGlayyklgdyeeAleafekAle 29
                +l++++ ++g+ +eA ++++ A++
    MMETSP0890-20130614|40_1 11 YLAKLLKAQGKDDEAQRHYDIAIK 34
                89******************9997 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 8
                HH-TT CS
  PF07719.12 29 eldPn 33
                +ldPn
    MMETSP0890-20130614|40_1 39 KLDPN 43
                79**9 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 4e-05
                HHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafe 25
                l nl+ +   +g+y++A+ ++e
    MMETSP0890-20130614|40_1 51 LLNLASLFKDKGNYDKAKPHYE 72
                7899*****************8 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0012       1.3      17      33 ..      10      26 ..       2      27 .. 0.85
   2 !   13.6   0.3   4.5e-05     0.051       8      33 ..      40      68 ..      39      69 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
  PF13431.1 17 nnLAelllnnGdleeAe 33
                +LA+ll+++G+ +eA+
   MMETSP0890-20130614|40_1 10 KYLAKLLKAQGKDDEAQ 26
               58**************8 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.5e-05
  PF13431.1  8 ldPnnadayn...nLAelllnnGdleeAe 33
               ldPn++d      nLA l++++G++++A+
   MMETSP0890-20130614|40_1 40 LDPNSPDYVAdllNLASLFKDKGNYDKAK 68
               6777766666666**************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   7.1e-05      0.08       5      37 ..      10      47 ..       6      52 .. 0.81
   2 !    8.5   0.0    0.0028       3.2       3      25 ..      50      72 ..      48      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.1e-05
  PF13428.1  5 lalarallalGdpdeAiallrrala.....laPddaea 37
                 la +l a+G  deA ++++ a++     l+P+++++
   MMETSP0890-20130614|40_1 10 KYLAKLLKAQGKDDEAQRHYDIAIKtqkkkLDPNSPDY 47
               679********************985555567777776 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0028
  PF13428.1  3 allalarallalGdpdeAiallr 25
                ll la ++ + G++d+A  +++
   MMETSP0890-20130614|40_1 50 DLLNLASLFKDKGNYDKAKPHYE 72
               5899**************99885 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0018         2       5      28 ..      11      34 ..      11      36 .. 0.90
   2 !    9.8   0.0   0.00087      0.99       3      24 ..      51      72 ..      50      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0018
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la++++++g+ deA + ++  ik
   MMETSP0890-20130614|40_1 11 YLAKLLKAQGKDDEAQRHYDIAIK 34
               58999***9**********98887 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00087
               HHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  3 lyklalsyyklgdtdeAleale 24
               l++la +++  g++d+A+  +e
   MMETSP0890-20130614|40_1 51 LLNLASLFKDKGNYDKAKPHYE 72
               899******999*****98886 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00026      0.29      34      65 .]       9      45 ..       1      45 [. 0.76
   2 ?    6.6   0.0      0.01        12       2      21 ..      53      72 ..      52      76 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00026
  PF13432.1 34 llllaeallrlgrldeAaallraal.....alaPddp 65
               + +la +l ++g+ deA + ++ a+     +l+P++p
   MMETSP0890-20130614|40_1  9 RKYLAKLLKAQGKDDEAQRHYDIAIktqkkKLDPNSP 45
               6788888888888888888888888888888877776 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.01
  PF13432.1  2 alArallraGdydeAlaale 21
                lA ++ + G+yd+A +++e
   MMETSP0890-20130614|40_1 53 NLASLFKDKGNYDKAKPHYE 72
               67888888899999998886 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.21     141     172 ..       2      34 ..       1      44 [. 0.87
   2 ?    0.5   0.0      0.36   4.2e+02     143     167 ..      47      71 ..      32      75 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
  PF11846.3 141 kPrpavirrl.alalallGkeeeArdamaeaaa 172
                 P++++ r++ a +l  +Gk++eA+++ + a  
   MMETSP0890-20130614|40_1   2 HPKVSTGRKYlAKLLKAQGKDDEAQRHYDIAIK 34 
                7999*****99***************9988765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.36
  PF11846.3 143 rpavirrlalalallGkeeeArdam 167
                ++a + +la+++   G+ ++A+ + 
   MMETSP0890-20130614|40_1  47 YVADLLNLASLFKDKGNYDKAKPHY 71 
                5666789999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.64
# Mc/sec: 284.57
//
Query:       MMETSP0890-20130614|41_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.62
# Mc/sec: 316.94
//
Query:       MMETSP0890-20130614|33_1  [L=1374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.6e-156  518.1   0.8   7.3e-154  512.0   0.1    2.2  2  PF01645.12 Conserved region in glutamate synthase
    1.1e-94  316.8   0.0    1.6e-92  309.6   0.0    2.3  1  PF04898.9  Glutamate synthase central domain
    2.4e-58  196.3   1.5    4.6e-58  195.4   1.0    1.5  1  PF01493.14 GXGXG motif
      8e-37  126.6   0.0    1.2e-36  126.0   0.0    1.3  1  PF00310.16 Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> PF01645.12  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0032        11     253     300 ..     463     511 ..     431     521 .. 0.80
   2 !  512.0   0.1  2.1e-157  7.3e-154       2     368 .]     661    1030 ..     660    1030 .. 0.98

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0032
                 --TT---HHHHHHHHHTT-GGG-EEEE-.-------HHHHHHH----BB CS
  PF01645.12 253 lPlelalaevdqtLvenglrdrvsliad.GglrtgadvvvalllGAdav 300
                 +P  la+ +v+q L ++g r +  +++d G+ +  +d+++ l +G d +
    MMETSP0890-20130614|33_1 463 VPSLLAVGAVHQHLLRTGQRGKAAIFVDsGDAKEVHDMALLLGFGCDGI 511
                 7899*********************997588999999998888888765 PP

  == domain 2    score: 512.0 bits;  conditional E-value: 2.1e-157
                  SS-HHHHHHHHHHHHH---HHHHHHHHHHHTS.-S-SGGGGEEE--SS--......--GGGS--HHHHHTTBB----------HHHHHHHHHHHHH---B-EE------GGGGS-----SEEEE--------HHHHH---EEEEE------------B------HHHHHHHTS-----B---SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE------------TTTT-SEEEEE-------EEEHHHHHH----TT---HHHHHHHHHTT-GGG-EEEE--------HHHHHHH----BB----HHHHH----S---GGGT----------HHHH..TT-------HHHHHHHHHHHHHHHHHH---- CS
  PF01645.12    2 rnepeviktlqkavqveskksidkyrkkleereklkalrdllelksaeepl.....isleevepaleikkriltgamSyGalseeahealakamnrlgtksntGEGGedeerlkkakdlaikQvasgrFGvteeyLvnakaleikiaQGakpgeGgqlpgekvseeiakiRnikpgvdliSPaphhdiysiedlaqliedLkeinpeakvsvKlvaeagvgtiaagvakanadiilidGldGGTGAspkssikhaGlPlelalaevdqtLvenglrdrvsliadGglrtgadvvvalllGAdavgigtaalialgCimarvChtntCpvGvatqdpkLrkrlkfegkpervvnyllvlaeevrellaalgin 368 
                   n+p+    lq+a++ +s+k+++ y+k++++++++++lr ll  + +  ++     i+l++vep++ei+kr++tgamS+G++s+eaheala+amn+lg+ sntGEGGed+ r++ ++   ikQvasgrFGvt++yL n+++++ik+aQGakpgeGg+lpg kvse+ia+ R  +pgv+liSP+phhdiysiedlaqli+dLk +np+ +vsvKlv+e gvg++aagvaka+ d+i+++G dGGTGA+ ++ ik aGlP+el++ae++qtLv nglrdrv+l++dG+l+t++dv++a++lGA+++ ++t++lialgCim+r+Ch+ntCpvG+atqdp+Lr  +kfeg+pe+v+n++ +laee+r +l++lg++
    MMETSP0890-20130614|33_1  661 LNTPKSMVYLQEAARRNSHKAFEDYSKEVNKSNQACTLRGLLRWRPEALAKgarsgIKLDDVEPTKEIVKRFVTGAMSLGSISQEAHEALAVAMNSLGGRSNTGEGGEDPIRFEDNRRSSIKQVASGRFGVTSHYLANSDQIQIKMAQGAKPGEGGELPGYKVSEYIAQCRGTTPGVGLISPPPHHDIYSIEDLAQLIHDLKCANPQGQVSVKLVSEVGVGVVAAGVAKAKSDHIVVSGGDGGTGAAAWTGIKCAGLPWELGVAETQQTLVLNGLRDRVRLQTDGQLKTARDVAIAAALGAEEFAFSTGPLIALGCIMMRKCHLNTCPVGIATQDPELR--AKFEGQPEHVINFFWLLAEEIRGILSNLGMR 1030
                  5667778889********************************99887766678888*******************************************************************************************************************************************************************************************************************************************************************************************..9***************************985 PP

>> PF04898.9  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.6   0.0   4.8e-96   1.6e-92       3     287 ..     217     588 ..     215     589 .. 0.92

  Alignments for each domain:
  == domain 1    score: 309.6 bits;  conditional E-value: 4.8e-96
                HHHHH----HHHHHHTHHHHHH-----EEE----S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEE------SS--GGGG-EEEESSSB--HHHHHHHH-....................----EEEEESEEE-.--..........................................................--SHHHHHHHHHHHHHHHHH----EEEEESS--STTEEE--HHHH---HHHHHHH---GGG-EEEEEESS--SHHHHHHH------EEEEHHHHHHHHHSSHHHHHH............---HHHHHHHHHHHHH---HHHHHH----BHHHH-----EEE---- CS
  PF04898.9   3 krqkafgyteeelelllspmaeegkealgsMGdDtplavLsekprllydYFkQlFaqVTNPpiDplREelvmsletnlGkegnlleeseeqakrlklesPilseeeleklkelee.................eelkakeidilfekeeg..........................................................keglekaleelceeaeeavkeGakiivLsdrkvseervaipallavgavhkhLikkglrtkvslvvetgearevhhfavLigyGasavnpYlaletleelaekgelk............elsaeeavknYkkaiekGllKilskmGistlqSYkgaqifeavGls 287
                +r+ + gyt+e++e+ll+pma  +ke lgsMG+D++lavLs +pr +ydYFkQlFaqVTNPpiDp+REelvmsl + +G+e n+l++s+e++ rl +e+P+l+++e+e+l +  +                 ++++a+++d++f+++++                                                           +  +++    c+  ++   eGa+ii+Lsd  +   r+++p+llavgavh+hL+++g+r k+++ v++g+a evh++a+L+g+G++ ++p +a+++l++l+++g +               +++ + k Y+ka+ kG+lK++skmGistlqSYkgaqifea+Gl+
   MMETSP0890-20130614|33_1 217 RRLVMHGYTTETMETLLAPMAIGAKEGLGSMGNDAALAVLSLEPRPVYDYFKQLFAQVTNPPIDPIREELVMSLVCPVGPEANVLKPSAENCARLVVEHPVLTTAEFESLIQPPTtktlssgetvplktadgRQWRAATLDTTFTVNDKssmlssrsrnsltyhhdaisevlqegngdgasaletalrelcehasaavtaslnesgaLHRHQHQHLGGCSVYSDDSGEGASIIILSDALAGPGRIPVPSLLAVGAVHQHLLRTGQRGKAAIFVDSGDAKEVHDMALLLGFGCDGIYPRVAYQALAKLRADGLVGarmrnlvsspddVPDDDALAKAYRKALAKGVLKVMSKMGISTLQSYKGAQIFEALGLH 588
                678899****************************************************************************************************666555444455666666666666669*************988999**************************************************9866533334444456888899999************************************************************************************9989999999999944455667789**********************************97 PP

>> PF01493.14  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   1.0   1.4e-61   4.6e-58       3     200 ..    1122    1318 ..    1120    1320 .. 0.96

  Alignments for each domain:
  == domain 1    score: 195.4 bits;  conditional E-value: 1.4e-61
                  EE--TT------TT---HHHH------.---EEEEEE--B------------EEEE---B-ST---------EEE---TT-....SS-GGGS------TT-------EEE-------TTTT-----EEE---.---TTTT-----EEE-------B--------EEEE----.-HHHHB-TTT-EEEES-S.----HHHH CS
  PF01493.14    3 gavdnadrlvgtelsqkiakklgeeglkkdtgevivrgsaGqsfgaslkggveltveGdandyvGkgmsgGtIvvkgnagdp..dageyvknvsaGdvvlyGatgGkifvegeaGerfgvrnsgaeivveGnvgdhlgeyMtgGtvvvlGdagrnvGagmsgGtiyvlgeiesgldkkvnleiveeerlealaeeekqlk 200 
                   +  n+dr+ gt+ls+ i+k+lg +gl++d++++++ gs Gqs+g  l+ g++++++Gdand  +kg+sgG+++v+++ ++     + +++nv++G+v+ yGat+G++f++g+aGerf+vrnsga +vveG+ gdh++eyMtgG+vv lG++grn++agmsgG++y+++     + +k+n+ +v+  r+    e+e++lk
    MMETSP0890-20130614|33_1 1122 FTLTNIDRTFGTMLSSVISKRLGIKGLPDDSVTINLHGSTGQSLGFTLAPGITIRIHGDANDGCAKGLSGGKVIVRPANEQLevPGFIASDNVIVGNVACYGATNGEVFFRGKAGERFCVRNSGALAVVEGV-GDHGCEYMTGGRVVCLGSTGRNFAAGMSGGIAYIYDPHA-VFSDKCNPGMVKLTRVPG-SEDEEELK 1318
                  56789****************************************************************************99889999*******************************************.*************************************99.*************99987.67777766 PP

>> PF00310.16  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   3.5e-40   1.2e-36     237     360 ..       1     127 [.       1     128 [. 0.97

  Alignments for each domain:
  == domain 1    score: 126.0 bits;  conditional E-value: 3.5e-40
                 HHHHCTT.SS.....HHHTC..S..TTSHHHHHHHHHHHHHHHH-...HHHHHHHHS....TT.GGGTHHHHHHHHHHHHHHHHHC--EEEEEEETTE.EEECS-EEEEEESEEEEETTEEEEEBSS CS
  PF00310.16 237 lkareeslkseefg.slkklrPiveenesDseildnvlelltrtg.releeavmmliPeayqkdpnlspeekafyeylkklmepwdGpaaivftdgkk.vgasldrnglRparygitedglvvvase 360
                 ++ar + l s+ +g ++++l P+++++ sDs ++d vl+llt++  r+l+e++mm++Pea+q +++l p++kafyey ++lmepwdGpa+i+ftd +k +ga+ldrnglRpary++t+d++v v+se
    MMETSP0890-20130614|33_1   1 MRARTNGLDSPYYGyETAQLLPVTSDDMSDSGNFDGVLQLLTTASdRSLPETAMMMVPEAWQDNDSLTPTKKAFYEYNSALMEPWDGPALIAFTDAHKfCGATLDRNGLRPARYYVTRDDRVLVSSE 127
                 78999999*********************************99988*************************************************9977***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.77u 0.14s 00:00:01.91 Elapsed: 00:00:02.94
# Mc/sec: 1119.93
//
Query:       MMETSP0890-20130614|36_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-34  116.2   0.0    1.5e-33  115.3   0.0    1.4  1  PF02469.17 Fasciclin domain
     0.0047   16.4   0.3         16    4.9   0.0    4.0  4  PF01058.17 NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   2.3e-37   1.5e-33       2     125 .]     368     492 ..     367     492 .. 0.93

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 2.3e-37
                 HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHHHHEEB.CCC-EEEEEEE---EEEEEE.EEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpetvsssdlkkaeqlat.legaklrvnikgngtvtvng.karvvrsdieatngvihvidkvLlp 125
                  +st+v++le+agl+e++ + +g++TvFaPtn+Af++lp+++l++ll+d ++l+++L+yHvv++++ ssdl++++ ++t  eg++++++ +++  + + + +a+v+++di+a+ngv+h+i+ vL+p
    MMETSP0890-20130614|36_1 368 SLSTLVTALETAGLVETI-NGDGPFTVFAPTNDAFDALPSGKLDELLADTDALTNVLLYHVVSGSIFSSDLSDGMVVTTlREGKTFKIDLSSGVVIDFGNeTATVLSPDISASNGVVHIISAVLIP 492
                 589***************.666*********************************************************99**********4333434448***********************98 PP

>> PF01058.17  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0037        25      73      86 ..      47      60 ..      43     110 .. 0.82
   2 ?   -0.6   0.0      0.12   8.3e+02      75      98 ..     152     183 ..     149     212 .. 0.62
   3 ?    1.2   0.0     0.034   2.3e+02      75      89 ..     255     269 ..     249     313 .. 0.73
   4 !    4.9   0.0    0.0024        16      71      86 ..     502     517 ..     474     555 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0037
                SSEEEE---TTT-- CS
  PF01058.17 73 akaviavGtCAafG 86
                + ++i  GtCA +G
    MMETSP0890-20130614|36_1 47 PYTIITTGTCALYG 60
                5689*********9 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.12
                 EEEE---TTT----TTSTT-TC-......... CS
  PF01058.17  75 aviavGtCAafGGipaaannpsv........g 98 
                 +++  GtC + G +  +++n ++         
    MMETSP0890-20130614|36_1 152 TIVTEGTCNSVGYVDILEENLCRatmndgyyN 183
                 58899*****9999999998844334444330 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.034
                 EEEE---TTT----T CS
  PF01058.17  75 aviavGtCAafGGip 89 
                 +++  GtCA+ G   
    MMETSP0890-20130614|36_1 255 VIVTEGTCASAGYTD 269
                 57888****999655 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.0024
                 HCSSEEEE---TTT-- CS
  PF01058.17  71 ekakaviavGtCAafG 86 
                   + ++i  GtCA +G
    MMETSP0890-20130614|36_1 502 VPPYTIITTGTCALYG 517
                 55789**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.99
# Mc/sec: 1394.24
//
Query:       MMETSP0890-20130614|49_1  [L=1034]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-15   56.9   0.8    2.8e-15   55.5   0.6    1.8  1  PF02213.11 GYF domain


Domain annotation for each model (and alignments):
>> PF02213.11  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.6     2e-19   2.8e-15       3      39 ..     440     476 ..     438     490 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2e-19
                 EEEE-----EE-EE-HHHHHHHHTTTSS-S--EEEE- CS
  PF02213.11   3 WeYkdpqgkiqGPFsseeMqsWykegYFqpslqvrrv 39 
                 W+Y+dpqg+iqGPF   +M++W+++gYF ++l+vr  
    MMETSP0890-20130614|49_1 440 WYYRDPQGNIQGPFEPMQMRQWFDAGYFDDDLPVRQQ 476
                 **********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2011  (0.147089); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.87u 0.38s 00:00:03.25 Elapsed: 00:00:02.95
# Mc/sec: 839.94
//
Query:       MMETSP0890-20130614|60_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   12.7   0.2      0.054   12.7   0.1    1.1  1  PF14421.1 A distinct subfamily of CDD/CDA-like deaminases


Domain annotation for each model (and alignments):
>> PF14421.1  A distinct subfamily of CDD/CDA-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.9e-06     0.054      50      92 ..      21      63 ..       3      65 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.9e-06
  PF14421.1 50 aeldgdgreelvrgvNlEvSmPtGSlCsErnaigkalasdpsl 92
                +++ ++++e++  +N+E  + tG +C E+   +k l s+ +l
   MMETSP0890-20130614|60_1 21 KDIKESSTNEIIDHTNYEQQISTGKRCVEHSGTSKNLDSNGTL 63
               34556677779********************999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|59_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-22   78.7   2.4      4e-22   78.2   0.6    1.9  2  PF00163.14 Ribosomal protein S4/S9 N-terminal domain
    6.4e-12   44.6   1.1    6.4e-12   44.6   0.8    1.8  2  PF01479.20 S4 domain
  ------ inclusion threshold ------
      0.036   13.8   0.4      0.081   12.6   0.3    1.6  1  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00163.14  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.6   8.9e-26     4e-22       2      94 .]       8     108 ..       7     108 .. 0.92
   2 ?    0.4   0.0      0.17   7.9e+02      61      79 ..     100     119 ..      98     133 .. 0.69

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 8.9e-26
                 -----HHHHHHH----TSTT-----SSSSSS------..----.....-------HHHHHHHHHHH--.--HHHHHHHHHHH...HH-------HHHHHH- CS
  PF00163.14   2 ryrgpelkllRRlgelerltaktkkareyglrpkqhgyrvkkg....rrlsryllrLeEkqklRlkyG.llerqLlklgvla...kkldgslgetllalle 94 
                 r+++++ k++RR++e+er++a++k+++eyglr+k++ +r +++    r+++r+ll+L++k+++R++ G +l+r++ ++g l+     ld +l+ t  ++le
    MMETSP0890-20130614|59_1   8 RNYSKTSKTPRRPYEKERIDAELKLVGEYGLRCKRELWRCQYAlakaRKAARELLTLDPKDPKRIFDGgALLRRMARYGLLDeseLELDAVLQMTTGKILE 108
                 899***************************************9*************************************997776677777666666665 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.17
                 HHH--.--HHHHHHHHHHHH CS
  PF00163.14  61 RlkyG.llerqLlklgvlak 79 
                 ++  G +ler+L + + ++ 
    MMETSP0890-20130614|59_1 100 QMTTGkILERRLQTKVFKQG 119
                 56678899999988777764 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.2   5.6e+03      13      22 ..      52      61 ..      51      62 .. 0.69
   2 !   44.6   0.8   1.4e-15   6.4e-12       1      45 [.     109     153 ..     109     155 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.2
                -SSHHHHHHH CS
  PF01479.20 13 assrseArql 22
                a+ r++Ar+l
    MMETSP0890-20130614|59_1 52 AKARKAAREL 61
                5667888877 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 1.4e-15
                 TBHHHHHHHHH--SSHHHHHHHHHTT-EEE---B---TT-BE-TT CS
  PF01479.20   1 rRLDkvLarlglassrseArqlIehGhVrVNGkvvkdpsyrVkpg 45 
                 rRL++ ++++gla+s+ +Ar lI+++h+rV ++vv+ ps++V+++
    MMETSP0890-20130614|59_1 109 RRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQVVNVPSFMVRVD 153
                 7*****************************************975 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   1.8e-05     0.081      11      45 ..      51      85 ..      46      87 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
  PF13371.1 11 ferALavverllllaPddpyerRDrGlllaqlgcl 45
                ++A +++  ll l+P dp  + D G ll ++ ++
   MMETSP0890-20130614|59_1 51 LAKARKAARELLTLDPKDPKRIFDGGALLRRMARY 85
               6789999999**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.77
# Mc/sec: 606.87
//
Query:       MMETSP0890-20130614|65_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 604.79
//
Query:       MMETSP0890-20130614|58_1  [L=1930]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-21   74.0   0.0      3e-20   72.3   0.0    1.9  1  PF00665.21 Integrase core domain
    1.1e-08   34.5   0.0      3e-08   33.1   0.0    1.7  1  PF00078.22 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
      0.034   13.7   1.6      0.082   12.5   1.1    1.7  1  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
        7.4    6.7  11.9      0.071   13.2   1.2    2.5  2  PF10883.3  Protein of unknown function (DUF2681)


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   8.9e-24     3e-20       3     118 ..    1725    1838 ..    1724    1840 .. 0.89

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 8.9e-24
                  XXXXXEEEEEEE.EET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHHHH CS
  PF00665.21    3 trpgelwqiDvt.pgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtlke 118 
                  ++p+e++++D++ p+++++++g++y+l+++  fs++++++++ d  +a+tva+ +   ++ ++g  pk+llsD+gs+f ++ +++ll+   +k   t++y+pq+ngk+E ++r+l++
    MMETSP0890-20130614|58_1 1725 SQPMEVLSVDFVgPISPKTRNGNQYILVFMCNFSNYAWFIPTVDC-KADTVAKHML-DICLQFGF-PKKLLSDRGSAFIANVYTELLALARVKGVKTTAYHPQTNGKNEVSHRLLMD 1838
                  689******************************************.5555555555.35555554.778**********************************************97 PP

>> PF00078.22  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   8.7e-12     3e-08       1     214 []    1155    1316 ..    1155    1316 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 8.7e-12
  PF00078.22    1 ipkkgtgkyRpisllsvddkilqkllakrLeeileplfsepshgfrpgrslhtikalnklkgskwllklDlkkaFdsiphdpllkkltafglpqrfirlikkllstrsravylegekgeiyesrglpqGsvlSPllfnlflhellkflrkafkprllyvrYaDDiligakskeeleeileeveeflkelglelnpeKtkithksdevkflGyvi 214 
                  +pk++ g+ R      v++  ++k++           +s+p ++  ++        l +lkg++++ ++D  ++F++ip++++ + ++af++p                         + +  +++ +G+ +    f+++l++ +++l      + ++  Y+DDi  g ++ +e  + l++v + +k++++ l+p+K+k+    +++k lG vi
    MMETSP0890-20130614|58_1 1155 VPKPD-GSLRQC----VNYTGVNKCTIF---------DSYPIPNQTEQ--------LIRLKGCNYMFSCDAWSGFWQIPIPEEERDVLAFITP------------------------FGLFRPTRMMFGGCNNAQVFQRALNQKFEDLII----NNTVNIYIDDISGGRSDWDEFINDLTQVFQRCKDENIMLKPKKCKLG--FSSIKHLGRVI 1316
                  68898.999994....599999999999.........88777776666........6689*********************************........................5677778888888888899******99999997....57*********************************************..9******9876 PP

>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1   2.4e-05     0.082       2      25 ..     225     249 ..     225     251 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-05
                 -S---SGGGG---------.-SS-- CS
  PF00642.19   2 ktelCrffartGtCpyGdr.CkFaH 25 
                 k+++C+f+++   C+y d+ C+FaH
    MMETSP0890-20130614|58_1 225 KQRICKFYLMPNGCRYSDKeCRFAH 249
                 789**************976***** PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   2.0       1.9   6.5e+03      39      68 ..     272     301 ..     267     308 .. 0.77
   2 ?   13.2   1.2   2.1e-05     0.071      14      73 ..     339     395 ..     334     397 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.9
  PF10883.3  39 neqlktekavaetevknakvkqkneentrr 68 
                +e ++ + a ++++v n k +++ + +t  
   MMETSP0890-20130614|58_1 272 KELIAINEARQKEKVANLKKQKTDKKKTDA 301
                677788888889999999988888777765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.1e-05
  PF10883.3  14 valilaylllklkkaerenekLqkeneqlktekavaetevknakvkqkneentrrlsrdd 73 
                +++i+ +   ++kk+++en +L+++ne l    a++e+ + n+++ ++  ++ +++++++
   MMETSP0890-20130614|58_1 339 ILAIGTRGEAQVKKLKKENSQLKNQNETL---LAQQEALISNFEIMKQRMDSFENSNQKA 395
                66777788889999999999999999987...5789999************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1930 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       910  (0.0665594); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.48u 0.37s 00:00:02.85 Elapsed: 00:00:01.45
# Mc/sec: 3189.63
//
Query:       MMETSP0890-20130614|74_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-10   39.1   1.7    6.2e-05   22.5   0.0    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.022   14.9   0.4      0.028   14.5   0.3    1.2  1  PF13646.1  HEAT repeats
      0.095   12.4   3.7       0.11   12.3   2.6    1.1  1  PF11747.3  Killing trait


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   1.4e-06    0.0064      19      41 .]       2      24 ..       1      24 [. 0.93
   2 !   22.5   0.0   1.4e-08   6.2e-05       5      33 ..      29      57 .]      25      57 .] 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.4e-06
                HHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18 19 qLLksgdeevqeeAawALsNLaa 41
                +LL+sg    +e+Aa AL+NL+a
    MMETSP0890-20130614|74_1  2 ALLSSGTATAKENAASALRNLTA 24
                5999*****************96 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.4e-08
                HHHHHHCHHHHHHHHHHC-SSHHHHHHHH CS
  PF00514.18  5 kqavieaGavppLvqLLksgdeevqeeAa 33
                  a+ +aGa++pL++LL+sg    +e+Aa
    MMETSP0890-20130614|74_1 29 DTAIANAGAIQPLIDLLSSGTATAKENAA 57
                34566*********************997 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   6.2e-06     0.028       8      52 ..       3      57 .]       1      57 [] 0.64

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.2e-06
  PF13646.1  8 LekdpdpevraaaieaLg..........qlgseealpaLlelLkdsdpevRraAa 52
               L+++  +  +++a+ aL            ++++ a+++L++lL++  +  +++Aa
   MMETSP0890-20130614|74_1  3 LLSSGTATAKENAASALRnltanenndtAIANAGAIQPLIDLLSSGTATAKENAA 57
               3366666777777777776666666666666667777777777777776666665 PP

>> PF11747.3  Killing trait
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.6   2.3e-05      0.11      27      68 ..       9      51 ..       1      52 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.3e-05
  PF11747.3 27 avsq.slglaaqNavaaQqqqnilaqAattqgvaqiysigtaa 68
               a+++  ++ a+ N +a+ ++  ++a+A + q + +++s gta 
   MMETSP0890-20130614|74_1  9 ATAKeNAASALRNLTANENNDTAIANAGAIQPLIDLLSSGTAT 51
               444446799*******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 213.43
//
Query:       MMETSP0890-20130614|80_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   12.1   0.0      0.072   12.0   0.0    1.1  1  PF12632.2 Mysoin-binding motif of peroxisomes


Domain annotation for each model (and alignments):
>> PF12632.2  Mysoin-binding motif of peroxisomes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-06     0.072     157     197 ..      26      63 ..       5      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.3e-06
  PF12632.2 157 leeaneslsdeeaedseteslkaLkflfqklefLRkllLCc 197
                leea++ +  e+a++   +s +++ ++++  ++L+k+l+C+
   MMETSP0890-20130614|80_1  26 LEEAERLMEGEDARE---SSRDNIGMYVDNTNLLCKILICQ 63 
                566777777777777...9*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 292.44
//
Query:       MMETSP0890-20130614|89_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 232.79
//
Query:       MMETSP0890-20130614|88_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 290.09
//
Query:       MMETSP0890-20130614|96_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.82
# Mc/sec: 1747.59
//
Query:       MMETSP0890-20130614|99_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   14.1  19.8      0.056   13.5  13.7    1.3  1  PF13634.1 Nucleoporin FG repeat region
        1.6    9.2  12.0      5e+02    1.2   8.3    3.2  1  PF10599.4 Retro-transposon transporting motif


Domain annotation for each model (and alignments):
>> PF13634.1  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  13.7   8.2e-06     0.056      53     101 ..      11      65 ..       1      70 [. 0.62

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.2e-06
  PF13634.1  53 ttggglFGssattt....asstsgglFGsstattqttt..ggglFGqaqaaqtqq 101
                  g+glFG++++++     ++t++gl G ++++ +t+   ggglFG +++++ +q
   MMETSP0890-20130614|99_1  11 GLGSGLFGTQPQQAgtqfRQQTGSGLLGTQPQQVGTQFglGGGLFGTQPQQAGTQ 65 
                3457888888766555556778888888887766665444788888888776443 PP

>> PF10599.4  Retro-transposon transporting motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   8.3     0.072     5e+02      30      82 ..      19      71 .]       1      71 [] 0.61

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.072
  PF10599.4 30 lqsstpsspftfgavpsipdsaganaasgsasnvpafsgsPasapnqlnlGsn 82
                q ++  + f   ++ +   ++ ++  +  +++   f++ P+ a++q++lGs+
   MMETSP0890-20130614|99_1 19 TQPQQAGTQFRQQTGSGLLGTQPQQVGTQFGLGGGLFGTQPQQAGTQFGLGSG 71
               3444444455555544444444455555555555559999********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       106  (0.00775307); expected 273.4 (0.02)
Passed bias filter:                       79  (0.00577823); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.33s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 270.07
//
Query:       MMETSP0890-20130614|102_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   88.1   2.5    5.6e-14   51.3   0.3    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.1e-22   79.6   1.1    1.2e-22   79.4   0.8    1.0  1  PF13424.1  Tetratricopeptide repeat
    1.7e-18   65.2   6.2    7.4e-09   34.7   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.4e-16   58.8   4.9    1.9e-07   30.3   1.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.1e-14   52.8   0.9    1.4e-06   27.5   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
    1.8e-13   49.7   3.6    4.6e-13   48.5   2.5    1.6  1  PF13414.1  TPR repeat
    1.6e-10   41.2   3.1    2.6e-10   40.5   2.2    1.4  1  PF13432.1  Tetratricopeptide repeat
    9.6e-10   37.4   5.1    3.1e-05   23.3   0.1    2.2  2  PF13181.1  Tetratricopeptide repeat
    7.3e-09   35.3   1.4     0.0025   18.1   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
    1.4e-08   34.2   9.2    9.9e-05   22.1   0.6    3.6  3  PF13431.1  Tetratricopeptide repeat
    5.8e-08   32.3   0.0     0.0091   16.2   0.0    2.1  2  PF07721.9  Tetratricopeptide repeat
    1.2e-07   31.5   2.0     0.0046   17.2   0.4    2.2  2  PF13174.1  Tetratricopeptide repeat
    3.4e-05   23.5   1.2      0.049   13.4   0.1    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    7.2e-05   22.7   1.0    0.00053   19.9   0.7    2.0  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00035   20.1   5.1      0.016   14.9   1.6    2.5  2  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.6   0.4       0.22   11.4   0.3    2.1  1  PF12688.2  Tetratrico peptide repeat
      0.031   13.4   0.1       0.41    9.8   0.0    2.1  2  PF10516.4  SHNi-TPR
      0.049   14.1   2.4        1.3    9.6   0.4    2.2  2  PF08238.7  Sel1 repeat
      0.062   12.7   0.5        7.2    6.0   0.1    2.2  2  PF00637.15 Region in Clathrin and VPS
      0.067   12.0   0.0        2.5    6.8   0.0    1.9  2  PF04910.9  Transcriptional repressor TCF25
      0.071   13.0   1.0          4    7.4   0.1    2.0  2  PF14346.1  Domain of unknown function (DUF4398)
       0.11   12.2   0.7        1.2    8.8   0.3    1.9  1  PF11846.3  Domain of unknown function (DUF3366)
       0.51   11.0   3.0         14    6.6   0.1    3.2  2  PF02071.15 Aromatic-di-Alanine (AdAR) repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.3   9.4e-17   5.6e-14       5      42 .]       1      38 [.       1      38 [. 0.98
   2 !   37.3   0.1   2.5e-12   1.5e-09       1      31 [.      39      69 .]      39      69 .] 0.95

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 9.4e-17
  PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               lnnLA +l+a+g+y+eA +l+e+a +i+++++ ++HP+
  MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEIYEKVYDPNHPH 38
               8************************************6 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 2.5e-12
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealai 31
               +a+ lnnLA++lr++g+y+eA +l+e+a +i
  MMETSP0890-20130614|102_1 39 VATGLNNLANLLRDQGKYDEAKPLYERAIEI 69
               6888************************886 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.8     2e-25   1.2e-22       8      75 ..       1      69 []       1      69 [] 0.97

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 2e-25
  PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               lnnla +l+++g+ydeA  lye+a+e+  +++ ++hp +a+ lnnlanl++ +g+ydeA++++e+A+ei
  MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEIyEKVYDPNHPHVATGLNNLANLLRDQGKYDEAKPLYERAIEI 69
               79*************************88899***********************************97 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.4   4.4e-11   2.6e-08       4      32 ..       1      29 [.       1      31 [. 0.95
   2 !   34.7   0.1   1.2e-11   7.4e-09       2      30 ..      41      69 .]      40      69 .] 0.94

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 4.4e-11
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnP 32
                l+nl+++++ +gkydeA   ye+A+e+++
   MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEIYE 29
                79************************986 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 1.2e-11
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                  l+nl+n+++ +gkydeA   ye+A+e+
   MMETSP0890-20130614|102_1 41 TGLNNLANLLRDQGKYDEAKPLYERAIEI 69
                579************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   1.1   3.1e-10   1.9e-07       4      32 ..       1      29 [.       1      31 [. 0.94
   2 !   30.1   0.1   3.7e-10   2.2e-07       1      30 [.      40      69 .]      40      69 .] 0.94

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 3.1e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleldP 32
                l+nl+ ++y++g+y+eA+ ++e+A+e++ 
   MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEIYE 29
                79************************986 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 3.7e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a +l+nl+++++ +g+y+eA+ ++e+A+e+
   MMETSP0890-20130614|102_1 40 ATGLNNLANLLRDQGKYDEAKPLYERAIEI 69
                5689************************96 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   2.4e-08   1.4e-05       2      32 ..       1      34 [.       1      37 [. 0.82
   2 !   27.5   0.0   2.4e-09   1.4e-06       2      27 ..      43      68 ..      42      69 .] 0.92

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.4e-08
  PF13176.1  2 llnLarlysrlgdyekAielyeraLalt...kdp 32
               l+nLa l  ++g+y++A  lyera+++    +dp
  MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEIYekvYDP 34
               89*********************77777444444 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 2.4e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLa 27
               l+nLa+l +++g+y++A  lyera++
  MMETSP0890-20130614|102_1 43 LNNLANLLRDQGKYDEAKPLYERAIE 68
               89*********************554 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   2.5   7.7e-16   4.6e-13       6      67 ..       1      69 []       1      69 [] 0.90

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 7.7e-16
  PF13414.1  6 lkelGnalfkegdydeAieayekAlel.....dpnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               l++l+  l+ +g+ydeA  +ye+A+e+     dpn++     ++nlA +++ +g +y+eA   ye+A+e+
  MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEIyekvyDPNHPHvatGLNNLANLLRDQG-KYDEAKPLYERAIEI 69
               689***********************866666788866666*************.6************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   2.2   4.4e-13   2.6e-10       2      58 ..       3      67 ..       2      69 .] 0.96

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 4.4e-13
  PF13432.1  2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58
                lA +l+++G+ydeA +++e+a++ +        P+ a  l +la +l ++g++deA  l+++a+
  MMETSP0890-20130614|102_1  3 NLAALLYAQGKYDEAKPLYERAIEIYekvydpnhPHVATGLNNLANLLRDQGKYDEAKPLYERAI 67
               58******************************9999**********************9999997 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.2   1.5e-05    0.0087       4      30 ..       1      27 [.       1      33 [. 0.92
   2 !   23.3   0.1   5.3e-08   3.1e-05       3      30 ..      42      69 .]      40      69 .] 0.94

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.5e-05
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++   G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAKPLYERAIEI 27
               5799999******************98 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 5.3e-08
               -TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                ++nl+ ++r+ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|102_1 42 GLNNLANLLRDQGKYDEAKPLYERAIEI 69
               589***********************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   4.2e-06    0.0025       6      32 ..       3      29 ..       1      43 [. 0.85
   2 !   17.1   0.0   8.8e-06    0.0052       4      29 ..      43      68 ..      39      69 .] 0.91

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.2e-06
  PF13428.1  6 alarallalGdpdeAiallrralalaP 32
                la++l a+G +deA  l++ra++ + 
  MMETSP0890-20130614|102_1  3 NLAALLYAQGKYDEAKPLYERAIEIYE 29
               69*********************9764 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 8.8e-06
  PF13428.1  4 llalarallalGdpdeAiallrrala 29
               l  la++l+++G +deA  l++ra++
  MMETSP0890-20130614|102_1 43 LNNLANLLRDQGKYDEAKPLYERAIE 68
               5679********************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1     9e-05     0.054      16      33 ..       1      18 [.       1      19 [. 0.94
   2 !   22.1   0.6   1.7e-07   9.9e-05       1      33 [.      20      60 ..      20      61 .. 0.87
   3 ?    2.2   0.1      0.39   2.3e+02       1       8 [.      62      69 .]      62      69 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9e-05
  PF13431.1 16 ynnLAelllnnGdleeAe 33
               +nnLA ll+++G+++eA+
  MMETSP0890-20130614|102_1  1 LNNLAALLYAQGKYDEAK 18
               69**************97 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1.7e-07
  PF13431.1  1 lyekalel.....dPnn...adaynnLAelllnnGdleeAe 33
               lye+a+e+     dPn+   a  +nnLA+ll ++G+++eA+
  MMETSP0890-20130614|102_1 20 LYERAIEIyekvyDPNHphvATGLNNLANLLRDQGKYDEAK 60
               79******65555588888899999**************97 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.39
  PF13431.1  1 lyekalel 8 
               lye+a+e+
  MMETSP0890-20130614|102_1 62 LYERAIEI 69
               7*****96 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0091       6      26 .]       3      23 ..       1      23 [. 0.92
   2 !   14.5   0.0   5.3e-05     0.032       4      26 .]      43      65 ..      40      65 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-05
               --HHHHHH-------HHHHHT CS
  PF07721.9  6 aLArallalGdldeAraller 26
               +LA +l+a+G +deA  l er
  MMETSP0890-20130614|102_1  3 NLAALLYAQGKYDEAKPLYER 23
               8**************999987 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 5.3e-05
               H---HHHHHH-------HHHHHT CS
  PF07721.9  4 llaLArallalGdldeAraller 26
               l +LA +l ++G +deA  l er
  MMETSP0890-20130614|102_1 43 LNNLANLLRDQGKYDEAKPLYER 65
               569**************999987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   7.7e-06    0.0046       6      30 ..       4      28 ..       3      30 .. 0.86
   2 !   14.0   0.0   8.2e-05     0.049       5      28 ..      45      68 ..      45      69 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.7e-06
               HHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF13174.1  6 lalsyyklgdtdeAlealerlikey 30
               la ++y++g++deA+ ++er i+ y
  MMETSP0890-20130614|102_1  4 LAALLYAQGKYDEAKPLYERAIEIY 28
               677777788*************998 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 8.2e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la +++ +g++deA+ ++er i+
  MMETSP0890-20130614|102_1 45 NLANLLRDQGKYDEAKPLYERAIE 68
               689999999************997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   8.2e-05     0.049      18      38 ..      11      31 ..       8      37 .. 0.90
   2 !    9.4   0.0    0.0014      0.84      18      34 ..      53      69 .]      47      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.2e-05
                TT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlelLlqa 38
                +gky+eA  lY+ A+e+++++
   MMETSP0890-20130614|102_1 11 QGKYDEAKPLYERAIEIYEKV 31
                79***************9987 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0014
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +gky+eA  lY+ A+e+
   MMETSP0890-20130614|102_1 53 QGKYDEAKPLYERAIEI 69
                79*************96 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.7     9e-07   0.00053      31      83 ..       4      65 ..       1      66 [. 0.70

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9e-07
               HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
  PF12895.2 31 lAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83
               lA  ly +g+y++A  l+++      + +d+++++ +     lA  l ++gkydeA  ++e+
  MMETSP0890-20130614|102_1  4 LAALLYAQGKYDEAKPLYERaieiyeKVYDPNHPHVATglnNLANLLRDQGKYDEAKPLYER 65
               68889999999666555555555554555668877777545667888899999999988887 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.6   2.6e-05     0.016       7      26 ..       4      21 ..       3      30 .. 0.89
   2 ?    5.7   0.0     0.019        12      13      26 ..      52      63 ..      46      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.6e-05
               HHHHHHHTT-HHHHHHH..H CS
  PF07720.7  7 lAaefynkkkyqeArelfsY 26
               lAa +y+++ky+eA  l  Y
  MMETSP0890-20130614|102_1  4 LAALLYAQGKYDEAKPL--Y 21
               8*************887..5 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.019
               HTT-HHHHHHH..H CS
  PF07720.7 13 nkkkyqeArelfsY 26
               +++ky+eA  l  Y
  MMETSP0890-20130614|102_1 52 DQGKYDEAKPL--Y 63
               59******777..5 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00036      0.22      14      65 ..      11      67 ..       3      69 .] 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00036
  PF12688.2 14 tGeeakAvplYrrAla..aGLagarrrrati...qlaSsLRnlGrveeslalleael 65
                G+ ++A plY+rA++  + + + +++++      la  LR  G+ +e+  l e+++
  MMETSP0890-20130614|102_1 11 QGKYDEAKPLYERAIEiyEKVYDPNHPHVATglnNLANLLRDQGKYDEAKPLYERAI 67
               689999999999998733455555555544322267888999999999888887765 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00068      0.41      14      37 ..      11      34 ..       9      35 .. 0.90
   2 ?    1.9   0.0      0.21   1.2e+02      10      30 ..      49      69 .]      43      69 .] 0.76

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00068
  PF10516.4 14 nEnFpqAveDlrkaLeLreqllpp 37
               ++++++A   +++a+e++e+++ p
  MMETSP0890-20130614|102_1 11 QGKYDEAKPLYERAIEIYEKVYDP 34
               6799999999***********986 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.21
  PF10516.4 10 iSlEnEnFpqAveDlrkaLeL 30
               +   ++++++A   +++a+e+
  MMETSP0890-20130614|102_1 49 LLRDQGKYDEAKPLYERAIEI 69
               555678999998889998887 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4    0.0022       1.3       5      33 ..       2      30 ..       1      33 [. 0.76
   2 ?    4.5   0.0     0.085        51       5      35 ..      44      67 ..      40      68 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0022
  PF08238.7  5 ynLGlyymylnGlgGvpk.d.pekAleWyek 33
               +nL+  ++y  G  ++++ + +e+A+e yek
  MMETSP0890-20130614|102_1  2 NNLAA-LLYAQGK-YDEAkPlYERAIEIYEK 30
               67882.5669999.6666457999***9998 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.085
  PF08238.7  5 ynLG.lyymylnGlgGvpkdpekAleWyekAA 35
               +nL+ l +  + G       +++A  +ye+A 
  MMETSP0890-20130614|102_1 44 NNLAnLLR--DQGK------YDEAKPLYERAI 67
               67774444..4444......557777888874 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.012       7.2      79      96 ..      14      31 ..       1      45 [. 0.62
   2 ?    5.7   0.0     0.015       8.8      74      95 ..      44      65 ..      37      69 .] 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.012
                HHHT-SSHHHHHHHH--- CS
  PF00637.15 79 lcekadlyeeavilykki 96
                + e + lye+a+++y+k+
   MMETSP0890-20130614|102_1 14 YDEAKPLYERAIEIYEKV 31
                334445666666666664 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.015
                THHHHHHHT-SSHHHHHHHH-- CS
  PF00637.15 74 ekvaklcekadlyeeavilykk 95
                + +a+l+ ++++y+ea+ ly++
   MMETSP0890-20130614|102_1 44 NNLANLLRDQGKYDEAKPLYER 65
                6899*************99987 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.02        12      44      77 ..       2      35 ..       1      41 [. 0.88
   2 ?    6.8   0.0    0.0042       2.5      36      67 ..      36      67 ..      34      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.02
  PF04910.9 44 lqlsevyreqgdfevAndlieraLfilervfhps 77
                +l+ ++  qg++ +A  l era+ i+e+v  p+
  MMETSP0890-20130614|102_1  2 NNLAALLYAQGKYDEAKPLYERAIEIYEKVYDPN 35
               678999999*******************998876 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0042
  PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraL 67
               +P    +L +l++++r qg++ +A  l era+
  MMETSP0890-20130614|102_1 36 HPHVATGLNNLANLLRDQGKYDEAKPLYERAI 67
               7777889***********************96 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0067         4      52      73 ..       5      26 ..       3      33 .. 0.85
   2 ?    5.0   0.0     0.037        22      51      72 ..      46      67 ..      29      68 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0067
  PF14346.1 52 AkaalaegkyeeArrlaeqAea 73
               A  ++a+gky+eA+ l e+A+ 
  MMETSP0890-20130614|102_1  5 AALLYAQGKYDEAKPLYERAIE 26
               77899*************9986 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.037
  PF14346.1 51 aAkaalaegkyeeArrlaeqAe 72
                A+ + ++gky+eA+ l e+A+
  MMETSP0890-20130614|102_1 46 LANLLRDQGKYDEAKPLYERAI 67
               57778899********999996 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3     0.002       1.2     122     170 ..      16      66 ..       6      69 .] 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.002
  PF11846.3 122 enpellaayleqalkllr.dkPrpav.irrlalalallGkeeeArdamaea 170
                e ++l ++++e ++k++  + P++a+ +++la +l  +Gk +eA+ + ++a
  MMETSP0890-20130614|102_1  16 EAKPLYERAIEIYEKVYDpNHPHVATgLNNLANLLRDQGKYDEAKPLYERA 66 
                5567778899999999952345666537899*************9888887 PP

>> PF02071.15  Aromatic-di-Alanine (AdAR) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.024        14       4      12 .]      20      28 ..      20      28 .. 0.93
   2 ?    3.4   0.0      0.29   1.7e+02       4      11 ..      62      69 .]      62      69 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.024
  PF02071.15  4 hyeqAaeiy 12
                +ye+A eiy
   MMETSP0890-20130614|102_1 20 LYERAIEIY 28
                6*******9 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.29
  PF02071.15  4 hyeqAaei 11
                +ye+A ei
   MMETSP0890-20130614|102_1 62 LYERAIEI 69
                6****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 232.89
//
Query:       MMETSP0890-20130614|109_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 184.34
//
Query:       MMETSP0890-20130614|108_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.48   10.2   2.8          3    7.7   0.0    3.1  4  PF04783.7 Protein of unknown function (DUF630)


Domain annotation for each model (and alignments):
>> PF04783.7  Protein of unknown function (DUF630)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.049   6.7e+02      40      51 ..       6      17 ..       1      23 [. 0.82
   2 ?   -0.8   0.1     0.095   1.3e+03      39      51 ..      26      38 ..      19      47 .. 0.72
   3 ?    7.7   0.0   0.00022         3      35      54 ..      50      69 ..      45      74 .. 0.85
   4 ?    0.9   0.0     0.028   3.8e+02      35      48 ..      71      84 ..      69      85 .] 0.84

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.049
  PF04783.7 40 aYlrsLrsvgaa 51
               +Yl sL s ga+
  MMETSP0890-20130614|108_1  6 DYLSSLPSSGAS 17
               79****999875 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.095
  PF04783.7 39 aaYlrsLrsvgaa 51
               ++Yl s+ s+ aa
  MMETSP0890-20130614|108_1 26 MDYLSSMSSAPAA 38
               6788888877666 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00022
  PF04783.7 35 AaaHaaYlrsLrsvgaaLsr 54
               Aa+ a+Yl sL s+g+++ +
  MMETSP0890-20130614|108_1 50 AAGPADYLSSLPSTGSSVPK 69
               78889***********9866 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.028
  PF04783.7 35 AaaHaaYlrsLrsv 48
               Aaa  +Yl sL s 
  MMETSP0890-20130614|108_1 71 AAAPGDYLSSLPSS 84
               889999*****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.33s 00:00:00.60 Elapsed: 00:00:05.31
# Mc/sec: 38.36
//
Query:       MMETSP0890-20130614|116_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-25   86.6   0.0    6.7e-25   86.4   0.0    1.0  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.3e-18   66.6   0.0    1.5e-18   66.4   0.0    1.0  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.7e-10   40.4   0.0    2.1e-10   40.1   0.0    1.1  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.029   14.0   0.1      0.032   13.8   0.1    1.3  1  PF11608.3  Limkain b1
       0.11   11.8   0.1       0.22   10.9   0.1    1.6  1  PF08206.6  Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   2.4e-28   6.7e-25       1      70 []       5      75 ..       5      75 .. 0.99

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 2.4e-28
                EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70
                lfVg+L++++++  L++ F+ fG++++++++ d etgrs+gf+fV+F++ e+a++A+++++g  l+gr+++
   MMETSP0890-20130614|116_1  5 LFVGGLSWNTDDTLLRQSFERFGSVNEARVILDrETGRSRGFGFVTFDDNEAAQSAIAEMDGSDLDGRNIR 75
                8*******************************************************************996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   5.4e-22   1.5e-18       1      69 []       5      75 ..       5      75 .. 0.98

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 5.4e-22
  PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69
               l+v+gl+++++++ lr+ f+++g+v++ r+++++  gr+rgf+fv+f+++e+Aq a++ ++   l+gr ir
  MMETSP0890-20130614|116_1  5 LFVGGLSWNTDDTLLRQSFERFGSVNEARVILDREtGRSRGFGFVTFDDNEAAQSAIAEMDgSDLDGRNIR 75
               79**********************************************************99******997 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   7.7e-14   2.1e-10       2      54 ..      20      77 ..      19      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 7.7e-14
  PF13893.1  2 yklfskfGkv..erikifrkk...ggqAfvefdtveaArkakeylngvklygktLkve 54
               ++ f++fG v   r+++ r+    +g++fv+fd+ eaA+ a++ ++g +l+g+ ++v+
  MMETSP0890-20130614|116_1 20 RQSFERFGSVneARVILDRETgrsRGFGFVTFDDNEAAQSAIAEMDGSDLDGRNIRVN 77
               5669******655677777669999********************************8 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.2e-05     0.032      40      74 ..      45      79 ..       3      86 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
  PF11608.3 40 ksavlrfanqeaaeRalkRleneDvfGnritvses 74
               +   + f ++eaa+ a   +++ D  G+ i v+e 
  MMETSP0890-20130614|116_1 45 GFGFVTFDDNEAAQSAIAEMDGSDLDGRNIRVNEA 79
               456799**************************987 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   8.1e-05      0.22       6      19 ..      42      55 ..      40      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.1e-05
  PF08206.6  6 hkkGFGFvipDdge 19
                ++GFGFv+ Dd+e
  MMETSP0890-20130614|116_1 42 RSRGFGFVTFDDNE 55
               689********943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 400.93
//
Query:       MMETSP0890-20130614|114_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.1e-132  440.9   0.1   3.8e-132  440.6   0.1    1.0  1  PF00232.13 Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> PF00232.13  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.6   0.1  2.8e-136  3.8e-132      11     416 ..      23     451 .]      20     451 .] 0.95

  Alignments for each domain:
  == domain 1    score: 440.6 bits;  conditional E-value: 2.8e-136
                 ---B--HHHH---TT------BHHHHHHTHGGGS--------TT-HHHHHHHHHHHHHH----EEEEE--HHHHSS--.----------HHHHHHHHHHHH---EEEEEEESS--BHHHHH.-----STHHHHHHHHHHHHHHHHT----SEEEEEB-HHHHHHHHHT-------..........--THHHHHHHHHHHHHHHHHHHHHHHHHT...TT-B---B-BE-EEEESSS-HHHH.HHHHHHHHHHTHHHHHHHH-----HHHHHHHHHC..STT--HHHHHHH.----S-E-EEE--EEEEEE-T..TSSTT-EEEEGGGCCB..........-----B----SBB-.HHHHHHHHHHHHHTTT---EEEEEB----B--CSSHHC--HHHHHHHHHHHHHHHHHH.H----B----BB-SB----T CS
  PF00232.13  11 wgaataayqiEGawnedGkglsiwDtfshtpgkvlegsagdvacdsYhrykeDvellkelgvkayrfSiaWsRilPkG.kegeineaGldyYdrLidelleagieplvTLyHwdlPqaLqd.eggwenrsiidaFkeYaevvfkrfgdkvklwlTfneplvvallgyltgehapg..........kkdleaayeaaHnlllaharavklyreka...qkgkiglvlnlslaeplseseedvveaaeraleflngwfldpvvkGkYpeemlelvrergalpeiteedkell.kgsvdflglnyYtselvknkeeeeaslseseeakaeeev..........dpslpktdsaweie.peglrkllellkekYenlpiyiteNGlglkdeveegkveDdkRidYlkehlnevkkai.edgvdlrgYfawsllDnfew 416
                 wg+ataayq+EG+  e+G+g siwD+fsh+pgk+ +g++gdva d Yh y++Dv+l++ lg+++yrfSi+WsRilP+G  +  +n++G+++Y+ L+d+l+e gieplvT+yHwdlPq L++ +ggw  r+++d+F++Ya+v+f+++g+++  w+T+ne ++++ +gy++g+hapg           ++l++++ aaH+++lah++av+++r++    +  +ig++      +pl ++eed+  aae+ +e + gwf+dpv+ G+Yp++m+e +++   lp++ +++ ++l ++  dflg+nyYts++v++++  ++   +++   a + +          +     + ++w    p+glr+ll++l+++Y+n+ i iteNG ++      + ++D+ R+dY+++h++++++ai  d +++ gY+awsl Dn+ew
   MMETSP0890-20130614|114_1  23 WGVATAAYQVEGGAYEGGRGASIWDVFSHIPGKTYHGDTGDVADDMYHLYRSDVALMASLGIESYRFSISWSRILPTGkIADGVNPQGIAFYHCLLDALEEVGIEPLVTIYHWDLPQHLEEeYGGWLGRQVVDDFANYAQVLFENYGHRISKWITINEAFTFVGQGYVSGVHAPGhcsdrercdtGDSLREPLLAAHHVILAHGAAVSRFRAMFgqgNGMEIGITNCGWKIYPLRPTEEDD-VAAEQFMETTWGWFFDPVIFGDYPSSMRERAGDD--LPKFSADESKMLrENGLDFLGVNYYTSMYVAASDAAHKASGTDTGVPALHGKftltpatdggQLIGAPAGTSWLFVvPQGLRDLLNWLDTRYPNHAIRITENGCAQPTYL--NPINDTFRVDYYRSHIQAMTEAIvYDQINVVGYYAWSLFDNYEW 451
                 ******************************************************************************66889*************************************99**************************************************************999**************************96655668********************.78999999999**********************9..************56679***************997766666666666666668999999999999999*****9999****************************99976..99*********************9*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1187.65
//
Query:       MMETSP0890-20130614|113_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-08   33.2   3.2    7.1e-05   22.2   0.1    3.1  3  PF07671.6  Protein of unknown function (DUF1601)
    3.8e-08   32.7   0.0      0.016   14.7   0.0    2.9  3  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
       0.12   11.8   0.0        7.4    5.9   0.0    2.1  2  PF05591.7  Protein of unknown function (DUF770)


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.04   1.8e+02      30      36 ..       2       8 ..       1       9 [. 0.89
   2 !    8.8   0.0   0.00024       1.1      23      36 ..      32      45 ..      21      46 .. 0.75
   3 !   22.2   0.1   1.6e-08   7.1e-05      17      36 ..      59      82 ..      56      82 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.04
  PF07671.6 30 pQsIANt 36
               pQ+ ANt
  MMETSP0890-20130614|113_1  2 PQELANT 8 
               8*****9 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00024
  PF07671.6 23 rnaerFNpQsIANt 36
                  + F+pQ+ ANt
  MMETSP0890-20130614|113_1 32 TKLRDFKPQELANT 45
               55788********9 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 1.6e-08
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+    +  + FNpQ+IANt
  MMETSP0890-20130614|113_1 59 LFNAIAdvalKKLNSFNPQDIANT 82
               99*********************9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.029   1.3e+02      38      50 ..       2      14 ..       1      18 [. 0.87
   2 !   13.8   0.0   6.9e-06     0.032      17      50 ..      18      51 ..       5      55 .. 0.85
   3 !   14.7   0.0   3.5e-06     0.016      18      50 ..      56      88 ..      52      90 .] 0.92

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.029
  PF06743.10 38 pelllnlvwSlcl 50
                p++l n+vw+++ 
   MMETSP0890-20130614|113_1  2 PQELANTVWAFAT 14
                89999*****986 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 6.9e-06
  PF06743.10 17 naeeffeklasalereLdsispelllnlvwSlcl 50
                +a +ff+++a +  ++L  ++p++l n+v +++ 
   MMETSP0890-20130614|113_1 18 EAPAFFNAIADVARTKLRDFKPQELANTVRAFAT 51
                5678*************************99986 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 3.5e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a +  ++L+s++p++  n+ w+++ 
   MMETSP0890-20130614|113_1 56 APALFNAIADVALKKLNSFNPQDIANTAWAFAT 88
                6789**************************986 PP

>> PF05591.7  Protein of unknown function (DUF770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0016       7.4      94     111 ..      32      49 ..      24      55 .. 0.86
   2 ?    4.1   0.0    0.0059        27      90     106 ..      65      81 ..      58      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0016
  PF05591.7  94 eslkDFePeavaeqvpeL 111
                ++l+DF+P+++a+ v + 
  MMETSP0890-20130614|113_1  32 TKLRDFKPQELANTVRAF 49 
                689**********99865 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0059
  PF05591.7  90 dLkfeslkDFePeavae 106
                d+ +++l+ F+P+++a+
  MMETSP0890-20130614|113_1  65 DVALKKLNSFNPQDIAN 81 
                67899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 336.99
//
Query:       MMETSP0890-20130614|124_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-07   29.2   1.4    7.9e-07   28.5   1.0    1.3  1  PF05739.14 SNARE domain
  ------ inclusion threshold ------
      0.041   13.6   0.4      0.053   13.2   0.2    1.2  1  PF12848.2  ABC transporter


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.0   1.2e-10   7.9e-07       2      59 ..      15      72 ..      14      76 .. 0.95

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.2e-10
                HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14  2 rdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkal 59
                +de+l +l +++ +++ + + ++ee + Q  lldr++ +++++++++++ +k++ ++ 
   MMETSP0890-20130614|124_1 15 QDEQLARLGEGVDRIRGVGQNIHEETKGQLGLLDRLEGDIDKTTTDIREETKHAEQVT 72
                9***************************************************998875 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   7.8e-06     0.053      26      76 ..       5      57 ..       2      70 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.8e-06
  PF12848.2 26 leqqekayekqqkeikkleefIdrfra.kaskakqaqsrekalekmer.iekp 76
               leqq+++ ++q +++++l e +dr r  +++ +   +     l+++e  i+k 
  MMETSP0890-20130614|124_1  5 LEQQQARMKAQDEQLARLGEGVDRIRGvGQNIHEETKGQLGLLDRLEGdIDKT 57
               89************************735566668888888888886436665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1100  (0.0804564); expected 273.4 (0.02)
Passed bias filter:                      879  (0.064292); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.64
# Mc/sec: 374.43
//
Query:       MMETSP0890-20130614|123_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-18   65.5   3.8    7.1e-14   51.9   0.1    2.9  3  PF00059.16 Lectin C-type domain


Domain annotation for each model (and alignments):
>> PF00059.16  Lectin C-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   5.2e-18   7.1e-14       3     108 .]      26     145 ..      24     145 .. 0.84
   2 ?   -3.8   0.5         1   1.4e+04      57      94 ..     174     208 ..     167     217 .. 0.61
   3 !   13.9   0.0   3.2e-06     0.044       9      65 ..     450     505 ..     445     513 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 5.2e-18
                 EEHHHHHHHHHHTT-EBS-HSSHHHHHHHHHHHCH....CSSEEEESEEESSTTTCEB.......TTT-B-STTCBSTTCSTSSCC.....TEEEEEEETTTTTSEEEEETTSEEEEEEEE CS
  PF00059.16   3 ktweeaekaCqkegakLvsiqseeeqkflkslvkk....snssaWiGlsdekkegefvw......tdgssveytnwaegepnnkks.....kedCvelskktegkwndesCesklkyvCek 108
                 ++w++a+  C+++g++L+ ++  + q++l++l+++    +  ++W+G +d++ +ge+ w        +    +t+w+   p   +s      e+C ++  + + +w+d++C  +++y+Ce+
   MMETSP0890-20130614|123_1  26 RSWNRARDKCRERGGELARVRGDQGQEYLTDLIQAapgrTPYYVWLGAQDRQVDGEWLWitdrvdLGDDYSGFTKWCGWIPFFGSSpngfaIENCLAMDMT-DECWDDQACFYSNPYICEF 145
                 79************************9999999887877899*****************744433333445566999988866555666779******998.78***************97 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1
                 .TTT-B-STTCBSTTCSTSSCCTEEEEEEETTTTTSEE CS
  PF00059.16  57 wtdgssveytnwaegepnnkkskedCvelskktegkwn 94 
                  +++ +++y+n + g +n+ +   +C+ +  +  ++++
   MMETSP0890-20130614|123_1 174 IWNNDRTAYENEEGGFENRVQ-AGTCAYVALE--NEVE 208
                 467777777766666655554.7788876666..4444 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 3.2e-06
                 HHHHHHTT-EBS-HSSHHHHHHHHHHHCH.CSSEEEESEEESSTTTCEB.TTT-B-ST CS
  PF00059.16   9 ekaCqkegakLvsiqseeeqkflkslvkk.snssaWiGlsdekkegefvwtdgssvey 65 
                 e++C++ +   +si++++e++++ + + + + + +W+G +    e ++vw+dgss++y
   MMETSP0890-20130614|123_1 450 EEYCADLELIPASIRDADEENLILEAMAErRIDTVWLGAE--LRERRWVWMDGSSTAY 505
                 678888888889*****99998888777658899****96..88999******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:01.25
# Mc/sec: 1211.60
//
Query:       MMETSP0890-20130614|128_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-30  105.1  35.7    5.8e-18   64.4   9.5    2.1  2  PF00137.16 ATP synthase subunit C
  ------ inclusion threshold ------
       0.39   10.2   6.0        3.8    7.0   0.0    3.5  3  PF04964.9  Flp/Fap pilin component
       0.85    9.0   5.4       0.17   11.3   1.2    1.8  2  PF01350.12 Flavivirus non-structural protein NS4A
          2    6.3   4.8        7.4    4.4   0.5    2.3  2  PF03323.8  Bacillus/Clostridium GerA spore germination protein


Domain annotation for each model (and alignments):
>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   9.7   4.6e-16   1.6e-12       1      63 [.      24      86 ..      24      89 .. 0.96
   2 !   64.4   9.5   1.7e-21   5.8e-18       1      65 [.     110     174 ..     110     175 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 4.6e-16
  PF00137.16  1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglvialll 63
                ++++g+  a+++a +ga++g++++g +++++ + nP l ++++i++++a++l+iygl++a++l
   MMETSP0890-20130614|128_1 24 FGFMGVTSALVFANIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL 86
                5799*********************************************************98 PP

  == domain 2    score: 64.4 bits;  conditional E-value: 1.7e-21
  PF00137.16   1 laalgaglavglaalgagigigiagaaaieaiarnPelfgkmligaalaEalaiyglviallllf 65 
                 +a+l+agl++gl++l+ag++ig++g a++ a++++ +lf+ m++++++aEal++ygl++al+l++
   MMETSP0890-20130614|128_1 110 YAFLAAGLCCGLSGLAAGMAIGVVGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQ 174
                 589***********************************************************975 PP

>> PF04964.9  Flp/Fap pilin component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0011       3.8      13      41 ..      78     106 ..      78     109 .. 0.91
   2 ?    0.2   0.0      0.15   5.1e+02      16      32 ..     124     142 ..     124     146 .. 0.83
   3 ?    2.1   1.2     0.038   1.3e+02      13      20 ..     164     171 ..     164     172 .. 0.97

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0011
  PF04964.9  13 YgLIAaliAvviiayvttlgtaLktkFtk 41 
                YgLI+a+i    i++ +t+g++  +kF++
  MMETSP0890-20130614|128_1  78 YGLIVAVILQGSITKPETSGDNTASKFSS 106
                ********999999999999999999987 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.15
  PF04964.9  16 IAaliAvvii..ayvttlg 32 
                +Aa +A+ ++  a+v  +g
  MMETSP0890-20130614|128_1 124 LAAGMAIGVVgdAGVRAVG 142
                6999*****9988888887 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.038
  PF04964.9  13 YgLIAali 20 
                YgLI+ali
  MMETSP0890-20130614|128_1 164 YGLIVALI 171
                *******9 PP

>> PF01350.12  Flavivirus non-structural protein NS4A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   4.9e-05      0.17      56     129 ..      25      99 ..       3     104 .. 0.83
   2 ?   -1.7   0.1      0.52   1.8e+03      80      87 ..     149     156 ..     124     175 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.9e-05
  PF01350.12  56 allglltlgvlllllarkgigrmslgvvvllvaavllwlggvsagkiAgvllvf.flllvvLiPepekQRsqqDn 129
                  ++g++++ v+  + a  g+ + ++g+ ++ v+   l++ ++ ++ +Agvl +  +++ v+L+    k  +  Dn
   MMETSP0890-20130614|128_1  25 GFMGVTSALVFANIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYgLIVAVILQGSITKPETSGDN 99 
                 57888888889999999*********************************9776256667776655555555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.52
  PF01350.12  80 lgvvvllv 87 
                 +g++ +l+
   MMETSP0890-20130614|128_1 149 VGMILILI 156
                 33333222 PP

>> PF03323.8  Bacillus/Clostridium GerA spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1    0.0034        12     402     423 ..      65      86 ..      51     114 .. 0.84
   2 ?    4.4   0.5    0.0022       7.4     403     423 ..     152     172 ..     127     175 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0034
  PF03323.8 402 rflllilaallglyGiilglll 423
                 ++ +++a++lg+yG+i++++l
  MMETSP0890-20130614|128_1  65 NIIPVVMAGVLGIYGLIVAVIL 86 
                567799***********99886 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0022
  PF03323.8 403 flllilaallglyGiilglll 423
                +l+li+a++lglyG+i++l+l
  MMETSP0890-20130614|128_1 152 ILILIFAEALGLYGLIVALIL 172
                6899*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:01.28
# Mc/sec: 335.12
//
Query:       MMETSP0890-20130614|131_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   12.0   0.7        2.5    7.4   0.0    2.0  2  PF02905.9 Epstein Barr virus nuclear antigen-1, DNA-binding domain
       0.27   10.9   8.2       0.82    9.4   1.0    2.3  2  PF08106.6 Formaecin family


Domain annotation for each model (and alignments):
>> PF02905.9  Epstein Barr virus nuclear antigen-1, DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1    0.0037        25     112     135 ..       6      29 ..       2      36 .. 0.83
   2 ?    7.4   0.0   0.00037       2.5     112     134 ..      35      57 ..      29      59 .] 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0037
                HHHHHHHHHHHHCTS-TTGGG-EE CS
  PF02905.9 112 aevvkdairdyistkPaPtsnvkv 135
                a  ++d  +d i+++P+P +n  v
  MMETSP0890-20130614|131_1   6 APLLADDPVDVITSRPEPVKNKPV 29 
                566788899*********998655 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00037
                HHHHHHHHHHHHCTS-TTGGG-E CS
  PF02905.9 112 aevvkdairdyistkPaPtsnvk 134
                a  ++da  d ++++P+P++n  
  MMETSP0890-20130614|131_1  35 APLLADAQADVVTSRPEPAKNKP 57 
                77899*************99865 PP

>> PF08106.6  Formaecin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   0.00012      0.82       2      10 ..      20      28 ..      19      29 .. 0.95
   2 ?    5.5   0.5    0.0021        14       2      10 ..      49      57 ..      48      58 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00012
  PF08106.6  2 RPNPVNtKP 10
               RP PV +KP
  MMETSP0890-20130614|131_1 20 RPEPVKNKP 28
               9******** PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0021
  PF08106.6  2 RPNPVNtKP 10
               RP P  +KP
  MMETSP0890-20130614|131_1 49 RPEPAKNKP 57
               9*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.66
# Mc/sec: 214.22
//
Query:       MMETSP0890-20130614|130_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.36s 00:00:00.64 Elapsed: 00:00:00.86
# Mc/sec: 108.67
//
Query:       MMETSP0890-20130614|134_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.44s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 166.15
//
Query:       MMETSP0890-20130614|135_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   83.2   0.0    1.1e-23   83.1   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    1.1e-12   47.4   0.4    1.1e-06   28.1   0.0    2.1  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.061   12.6   6.7        2.5    7.5   0.1    4.0  4  PF01744.15 GLTT repeat (6 copies)
       0.93    9.4   7.4         11    6.0   0.1    3.8  4  PF05345.7  Putative Ig domain
        3.6    7.1   5.4        5.4    6.5   0.5    2.8  2  PF11688.3  Protein of unknown function (DUF3285)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   4.2e-27   1.1e-23      13      93 ..       3      83 ..       1      84 [] 0.96

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 4.2e-27
  PF13306.1 13 nltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslt 93
               +l ++t+p  +t+I++ +F +c+sl+++tlp  lt+ig +aF nc+slt++t+p  lt+ig+naF++c+sl+++ +p  lt
  MMETSP0890-20130614|135_1  3 SLIQLTLPAGLTTIDDAVFFGCTSLTHVTLPAGLTTIGLSAFVNCTSLTHLTLPVGLTTIGQNAFRGCTSLTQVILPAGLT 83
               7899*************************************************************************9887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.1e-10   1.1e-06       2      56 ..       3      55 ..       2      57 .. 0.94
   2 !   23.1   0.0   1.4e-08   3.9e-05      13      56 ..      36      78 ..      35      80 .. 0.96

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 4.1e-10
  PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               +L  L L    l++i+d +F g+++L++  L    l++i   af +++sL++L L
  MMETSP0890-20130614|135_1  3 SLIQLTLPAG-LTTIDDAVFFGCTSLTHVTLP-AGLTTIGLSAFVNCTSLTHLTL 55
               6777889999.*********************.********************98 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.4e-08
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l++i+ +aF ++++L++L L    l++i  +af g++sL+++ L
  MMETSP0890-20130614|135_1 36 LTTIGLSAFVNCTSLTHLTLP-VGLTTIGQNAFRGCTSLTQVIL 78
               899999***************.******************9987 PP

>> PF01744.15  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.13   3.5e+02      16      19 ..      12      15 ..      11      17 .. 0.45
   2 ?    7.5   0.1    0.0009       2.5      11      17 ..      35      41 ..      33      44 .. 0.51
   3 ?    4.9   0.0    0.0058        16      16      21 ..      58      63 ..      56      66 .. 0.63
   4 ?   -0.3   0.1      0.24   6.4e+02      26      29 .]      81      84 .]      74      84 .] 0.60

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.13
  PF01744.15 16 GLtT 19
                GLtT
   MMETSP0890-20130614|135_1 12 GLTT 15
                3333 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0009
  PF01744.15 11 GLvTmGL 17
                GL+T+GL
   MMETSP0890-20130614|135_1 35 GLTTIGL 41
                4444444 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0058
  PF01744.15 16 GLtTlG 21
                GLtT+G
   MMETSP0890-20130614|135_1 58 GLTTIG 63
                666666 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.24
  PF01744.15 26 GLtt 29
                GLtt
   MMETSP0890-20130614|135_1 81 GLTT 84
                3433 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.043   1.2e+02      11      17 ..       8      14 ..       5      18 .. 0.90
   2 ?    6.0   0.1    0.0038        11       7      17 ..      27      37 ..      15      38 .. 0.85
   3 ?    1.6   0.0     0.094   2.6e+02       8      17 ..      51      60 ..      40      69 .. 0.84
   4 ?    1.2   0.0      0.12   3.4e+02      12      17 ..      78      83 ..      70      83 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.043
  PF05345.7 11 gLPsGLt 17
               +LP+GLt
  MMETSP0890-20130614|135_1  8 TLPAGLT 14
               7*****8 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0038
  PF05345.7  7 pgsngLPsGLt 17
                ++ +LP+GLt
  MMETSP0890-20130614|135_1 27 LTHVTLPAGLT 37
               3799******8 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.094
  PF05345.7  8 gsngLPsGLt 17
               ++ +LP GLt
  MMETSP0890-20130614|135_1 51 THLTLPVGLT 60
               5679****98 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.12
  PF05345.7 12 LPsGLt 17
               LP+GLt
  MMETSP0890-20130614|135_1 78 LPAGLT 83
               9****8 PP

>> PF11688.3  Protein of unknown function (DUF3285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5     0.002       5.4      19      37 ..      23      45 ..      20      47 .. 0.76
   2 ?    1.7   0.2     0.063   1.7e+02      21      28 ..      48      55 ..      46      67 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.002
  PF11688.3 19 ggkSLlHF....gLTalgllgfl 37
               g +SL+H     gLT++gl +f+
  MMETSP0890-20130614|135_1 23 GCTSLTHVtlpaGLTTIGLSAFV 45
               668999973333579****9995 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.063
  PF11688.3 21 kSLlHFgL 28
               +SL+H +L
  MMETSP0890-20130614|135_1 48 TSLTHLTL 55
               79999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:01.68
# Mc/sec: 119.82
//
Query:       MMETSP0890-20130614|126_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-05   23.9   0.0      0.023   14.2   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
    0.00038   19.9   0.4      0.078   12.5   0.1    2.1  2  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-06     0.023      18      50 ..      10      42 ..       6      45 .. 0.92
   2 !    8.3   0.0   0.00024       1.6      18      43 ..      47      72 ..      43      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.4e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a +  ++Ld++ p++l n+ w+++ 
   MMETSP0890-20130614|126_1 10 APALFNAIAVVALKKLDGFTPQALANTAWAFAT 42
                6789***************************96 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00024
  PF06743.10 18 aeeffeklasalereLdsispellln 43
                a ++f+++a a  ++Ld+++p++l n
   MMETSP0890-20130614|126_1 47 APALFNAIADAALKKLDKFNPQALAN 72
                6789******************9966 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0012       8.5      17      36 ..      13      36 ..      10      36 .. 0.92
   2 !   12.5   0.1   1.1e-05     0.078      17      36 ..      50      73 .]      47      73 .] 0.93

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0012
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+    +    F pQ  ANt
  MMETSP0890-20130614|126_1 13 LFNAIAvvalKKLDGFTPQALANT 36
               9999999999*************8 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.1e-05
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+    +    FNpQ  ANt
  MMETSP0890-20130614|126_1 50 LFNAIAdaalKKLDKFNPQALANT 73
               99*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.92
# Mc/sec: 190.15
//
Query:       MMETSP0890-20130614|149_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 275.94
//
Query:       MMETSP0890-20130614|144_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-59  196.7   6.7    8.6e-20   70.1   0.1    3.0  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.2   1.5e-22     2e-18       4      92 ..       3      93 ..       1      97 [. 0.90
   2 !   70.1   0.1   6.3e-24   8.6e-20       2      94 ..      99     186 ..      98     188 .. 0.95
   3 !   63.9   0.1   5.5e-22   7.5e-18       6      91 ..     195     280 ..     191     284 .. 0.94

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 1.5e-22
                HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS-..---HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22  4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasassky..kgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92
                +vl++l +++ A++i++++++P+d+vKtrlq s ++++++y   gi+++++ + keeGi+++++G+ +++lr+++++++++++y+ lk  +
   MMETSP0890-20130614|144_1  3 GVLANLGCAGGAAVITVTFIHPIDTVKTRLQVSGTKGARNYaqLGIFGTISVVAKEEGITAFWKGIPAAWLREASYTSFRLGLYKPLKVAF 93
                6889999************************77777777764579***************************************9998766 PP

  == domain 2    score: 70.1 bits;  conditional E-value: 6.3e-24
                 HHHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   2 klsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                 +++++ +++aG+++g ++++v +P+d++Ktr++     as+k  g++   ++iyk  Gi+g+yrGl +n++r +++++ k+++y+t k+++++
   MMETSP0890-20130614|144_1  99 DSPFILKFCAGGASGGLGSMVGNPFDILKTRMM-----ASEKGVGLIASASTIYKASGILGFYRGLDANIMRAIVNNGTKMACYDTSKNFIKN 186
                 5678999**************************.....889999*********************************************9986 PP

  == domain 3    score: 63.9 bits;  conditional E-value: 5.5e-22
                 HHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkl 91 
                   + la+a+Ag++ ++ +tP+d+ +trl+++ + +++ y +i+d++ k+  +eG+++l++G++p++ r++p++ +++ ++e++ k+
   MMETSP0890-20130614|144_1 195 GLQTLASAVAGFFMTCTVTPFDMCRTRLMNQPSDQPKVYFTIVDTFFKVAINEGPLALWKGFIPAWARIAPTTTCQLILFEQFTKM 280
                 55779*****************************************************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.98
# Mc/sec: 699.35
//
Query:       MMETSP0890-20130614|161_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.99
# Mc/sec: 1449.92
//
Query:       MMETSP0890-20130614|163_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-157  515.6   0.3    3.2e-40  136.7   0.0    4.0  4  PF13306.1 Leucine rich repeats (6 copies)
    3.3e-48  161.1   0.0    1.6e-06   27.6   0.0    8.4  9  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
       0.23   11.1   1.2         74    3.1   0.0    4.4  6  PF12872.2 OST-HTH/LOTUS domain


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   1.7e-42   7.9e-39       1     122 [.      27     149 ..      27     149 .. 0.99
   2 !  136.7   0.0     7e-44   3.2e-40       1     128 [.      96     224 ..      96     225 .. 0.99
   3 !  133.6   0.0     6e-43   2.7e-39       1     125 [.     188     313 ..     188     313 .. 0.99
   4 !  130.4   0.0     6e-42   2.7e-38       1     117 [.     257     374 ..     257     376 .] 0.99

  Alignments for each domain:
  == domain 1    score: 132.1 bits;  conditional E-value: 1.7e-42
  PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitipssvteigsnaF 122
                t++++  F++c+n+t +t+p  +t+Ig+yaF++c+sl+++tlp  lt+ig+ aF++c+slt++ +p  lt+ig+ aF++cssl ++++p  lttig++aF nc sl++it+p  +++ig+naF
  MMETSP0890-20130614|163_1  27 TTLPDGFFEYCDNITFVTLPAGLTTIGKYAFRGCTSLTQLTLPADLTTIGDGAFYGCTSLTQLILPVGLTTIGDCAFYGCSSLAQLTLPAGLTTIGNNAFGNCrSLTQITLPVGLSTIGQNAF 149
                5778999*******************************************************************************************************************9 PP

  == domain 2    score: 136.7 bits;  conditional E-value: 7e-44
  PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitipssvteigsnaFsncssl 128
                t+Ig+ aFy+c++l ++t+p  +t+Ig++aF nc+sl++itlp  l++ig++aF  c+slt++t+p  lt i  +aF +c+sl+++++p  lttig+ aF +c sl+++++p  +t+i++ +F +c+sl
  MMETSP0890-20130614|163_1  96 TTIGDCAFYGCSSLAQLTLPAGLTTIGNNAFGNCRSLTQITLPVGLSTIGQNAFFCCTSLTQLTLPAGLTMIRGHAFDGCTSLSQLTLPAGLTTIGNFAFRGCtSLTQVILPVGLTTIDDAVFFDCTSL 224
                79*****************************************************************************************************9**********************987 PP

  == domain 3    score: 133.6 bits;  conditional E-value: 6e-43
  PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitipssvteigsnaFsnc 125
                t+Ig++aF++c++lt++ +p  +t+I++ +F +c+sl ++tlp  lt+ige aF +c+slt++t+p  lt+ige+aF++c+sl+++++p  lttig+ aF++c sl+++t+   +t+ig++aF++c
  MMETSP0890-20130614|163_1 188 TTIGNFAFRGCTSLTQVILPVGLTTIDDAVFFDCTSLIQLTLPAGLTTIGEAAFCGCTSLTQLTFPAGLTTIGERAFRDCTSLTQVTLPVGLTTIGDGAFECCtSLTELTFLVGLTTIGEYAFYGC 313
                79*****************************************************************************************************9*********************9 PP

  == domain 4    score: 130.4 bits;  conditional E-value: 6e-42
  PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitipssvtei 117
                t+Ig+ aF++c++lt++t+p  +t+Ig+ aF+ c+sl+++t+   lt+igeyaF++c+slt++t+p  lt+i+  aFs+c+sl+++++p  lttig++aFs+c sl+++t+p+s+t+i
  MMETSP0890-20130614|163_1 257 TTIGERAFRDCTSLTQVTLPVGLTTIGDGAFECCTSLTELTFLVGLTTIGEYAFYGCTSLTQLTLPAGLTTIDYGAFSDCTSLTQLTLPAGLTTIGEYAFSDCtSLTQLTLPDSITDI 374
                79*****************************************************************************************************9************98 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.1e-06     0.014      14      56 ..      27      68 ..      24      71 .. 0.95
   2 !   27.6   0.0   3.5e-10   1.6e-06       4      56 ..      41      91 ..      38      93 .. 0.91
   3 !   24.2   0.0   4.2e-09   1.9e-05      13      56 ..      72     114 ..      70     116 .. 0.96
   4 !   20.0   0.1   8.3e-08   0.00038      10      56 ..     116     160 ..     112     162 .. 0.93
   5 !   21.5   0.0   2.9e-08   0.00013       2      56 ..     154     206 ..     154     207 .. 0.95
   6 !   21.1   0.0   3.8e-08   0.00017      13      56 ..     210     252 ..     209     254 .. 0.96
   7 !   18.4   0.0   2.6e-07    0.0012      13      55 ..     256     297 ..     254     299 .. 0.96
   8 !   24.7   0.0   2.8e-09   1.3e-05      13      56 ..     302     344 ..     300     347 .. 0.97
   9 !   22.5   0.0   1.4e-08   6.3e-05      13      56 ..     325     367 ..     324     370 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.1e-06
  PF13855.1 14 kvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               +++pdg+F++++n +   L    l++i + af g++sL++L L
  MMETSP0890-20130614|163_1 27 TTLPDGFFEYCDNITFVTLP-AGLTTIGKYAFRGCTSLTQLTL 68
               689*****************.********************98 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 3.5e-10
  PF13855.1  4 keLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               + + L    l++i++ aF g+++L+ L L    l++i ++af g++sL++L L
  MMETSP0890-20130614|163_1 41 TFVTLPAG-LTTIGKYAFRGCTSLTQLTLP-ADLTTIGDGAFYGCTSLTQLIL 91
               56667777.9********************.********************98 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 4.2e-09
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                l++i+dgaF g+++L+ L L    l++i ++af g+ sL +L L
  MMETSP0890-20130614|163_1  72 LTTIGDGAFYGCTSLTQLILP-VGLTTIGDCAFYGCSSLAQLTL 114
                89*******************.********************98 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 8.3e-08
  PF13855.1  10 nNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                   l++i+++aF+++ +L+ + L    l++i  +af +++sL++L L
  MMETSP0890-20130614|163_1 116 AG-LTTIGNNAFGNCRSLTQITLP-VGLSTIGQNAFFCCTSLTQLTL 160
                55.9********************.********************98 PP

  == domain 5    score: 21.5 bits;  conditional E-value: 2.9e-08
  PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                +L+ L L    l+ i+ +aF g+++L  L L    l++i   af g++sL+++ L
  MMETSP0890-20130614|163_1 154 SLTQLTLPAG-LTMIRGHAFDGCTSLSQLTLP-AGLTTIGNFAFRGCTSLTQVIL 206
                5899999999.*********************.******************9887 PP

  == domain 6    score: 21.1 bits;  conditional E-value: 3.8e-08
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                l++i+d +F ++++L  L L    l++i + af g++sL++L +
  MMETSP0890-20130614|163_1 210 LTTIDDAVFFDCTSLIQLTLP-AGLTTIGEAAFCGCTSLTQLTF 252
                89*******************.*******************975 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 2.6e-07
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLn 55 
                l++i+++aF ++++L+   L    l++i ++af++++sL+eL 
  MMETSP0890-20130614|163_1 256 LTTIGERAFRDCTSLTQVTLP-VGLTTIGDGAFECCTSLTELT 297
                89*******************.*******************97 PP

  == domain 8    score: 24.7 bits;  conditional E-value: 2.8e-09
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                l++i++ aF g+++L+ L L    l++i+ +af++++sL++L L
  MMETSP0890-20130614|163_1 302 LTTIGEYAFYGCTSLTQLTLP-AGLTTIDYGAFSDCTSLTQLTL 344
                899******************.********************98 PP

  == domain 9    score: 22.5 bits;  conditional E-value: 1.4e-08
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                l++i+ gaF+++++L+ L L    l++i + af++++sL++L L
  MMETSP0890-20130614|163_1 325 LTTIDYGAFSDCTSLTQLTLP-AGLTTIGEYAFSDCTSLTQLTL 367
                899******************.********************99 PP

>> PF12872.2  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.7   3.2e+03      46      54 ..      59      67 ..      54      79 .. 0.72
   2 ?    3.1   0.0     0.016        74      45      54 ..      81      90 ..      77      98 .. 0.90
   3 ?    0.7   0.0     0.095   4.3e+02      44      53 ..     103     112 ..     100     123 .. 0.85
   4 ?   -2.7   0.0       1.1     5e+03      46      53 ..     174     181 ..     167     183 .. 0.73
   5 ?   -3.3   0.0       1.6   7.3e+03      46      53 ..     243     250 ..     241     253 .. 0.88
   6 ?    1.5   0.0     0.053   2.4e+02      44      53 ..     310     319 ..     307     330 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.7
               ----HHHHH CS
  PF12872.2 46 GyskLsdLl 54
               G+ +L++L 
  MMETSP0890-20130614|163_1 59 GCTSLTQLT 67
               999***996 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.016
               -----HHHHH CS
  PF12872.2 45 YGyskLsdLl 54
               YG+ +L++L+
  MMETSP0890-20130614|163_1 81 YGCTSLTQLI 90
               *********9 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.095
                T-----HHHH CS
  PF12872.2  44 nYGyskLsdL 53 
                 YG+s+L +L
  MMETSP0890-20130614|163_1 103 FYGCSSLAQL 112
                5******998 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 1.1
                ----HHHH CS
  PF12872.2  46 GyskLsdL 53 
                G+ +Ls+L
  MMETSP0890-20130614|163_1 174 GCTSLSQL 181
                77777776 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 1.6
                ----HHHH CS
  PF12872.2  46 GyskLsdL 53 
                G+ +L++L
  MMETSP0890-20130614|163_1 243 GCTSLTQL 250
                9****998 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.053
                T-----HHHH CS
  PF12872.2  44 nYGyskLsdL 53 
                 YG+ +L++L
  MMETSP0890-20130614|163_1 310 FYGCTSLTQL 319
                6********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      106  (0.00775307); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.81
# Mc/sec: 1112.38
//
Query:       MMETSP0890-20130614|169_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-10   40.5   2.3    4.7e-10   39.6   1.6    1.5  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
      0.015   14.6   2.6       0.29   10.4   0.9    2.3  2  PF05387.6  Chorion family 3


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   1.6   6.9e-14   4.7e-10       1      87 [.     167     260 ..     167     263 .. 0.72

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 6.9e-14
  PF00428.14   1 eptaadikavlkaagveveaerlkl.lvkalegkdikeliangsakla.......aaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                 +pt a++++++++a++ + a  ++   +++ ++  +k  +++++a+ a       + ++++   ++a+++aaaaee+k+e ee E+e+ dmG+g+
   MMETSP0890-20130614|169_1 167 YPTLASVPHSIANAFKAMVALVVECpKYSFEKADPFKLFVSDPEAFKAkygagggGGGGSGGGSGGAGDSAAAAEEKKEEVEE-EDEEIDMGGGM 260
                 79******************9999846899999999********99889**98754434444444444444444444444444.46666***874 PP

>> PF05387.6  Chorion family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0    0.0068        46     110     126 ..      78      94 ..      71     104 .. 0.86
   2 ?   10.4   0.9   4.2e-05      0.29      16      42 ..     212     239 ..     184     251 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0068
  PF05387.6 110 qlaskirqgkikvvapq 126
                q+a+ki +gki++v+p 
  MMETSP0890-20130614|169_1  78 QIATKIVKGKIEIVSPV 94 
                899************94 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.2e-05
  PF05387.6  16 asasYGsagggG.GkGsgdlgagasagl 42 
                 +a YG+ gggG G G+g++gag sa  
  MMETSP0890-20130614|169_1 212 FKAKYGAGGGGGgGSGGGSGGAGDSAAA 239
                5799**9888776889999998887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:01.08
# Mc/sec: 607.96
//
Query:       MMETSP0890-20130614|171_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        6.3    6.2   8.9         24    4.3   0.1    4.2  4  PF02260.15 FATC domain


Domain annotation for each model (and alignments):
>> PF02260.15  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.021   2.9e+02       5      13 ..      13      21 ..      12      23 .. 0.90
   2 ?    3.5   0.1    0.0032        44       6      21 ..      35      50 ..      34      53 .. 0.77
   3 ?    4.3   0.1    0.0017        24       4      13 ..      61      70 ..      58      72 .. 0.92
   4 ?   -0.8   0.1     0.068   9.3e+02       4      23 ..      75      94 ..      73      96 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.021
  PF02260.15  5 veqQVdrLI 13
                +e+QV++LI
   MMETSP0890-20130614|171_1 13 AESQVEELI 21
                599*****9 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0032
  PF02260.15  6 eqQVdrLIseAtspeN 21
                ++QV++LIs  +s eN
   MMETSP0890-20130614|171_1 35 QAQVQELISAKVSAEN 50
                68******97666555 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0017
  PF02260.15  4 sveqQVdrLI 13
                s+e+QV++LI
   MMETSP0890-20130614|171_1 61 STEAQVQELI 70
                89*******9 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.068
  PF02260.15  4 sveqQVdrLIseAtspeNLa 23
                ++eqQV +  + A+ + NL 
   MMETSP0890-20130614|171_1 75 TAEQQVKDVREAAVENANLV 94
                789***99888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1790  (0.130925); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:01.63
# Mc/sec: 1112.91
//
Query:       MMETSP0890-20130614|172_1  [L=1052]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00044   19.6   0.0     0.0012   18.2   0.0    1.8  1  PF00566.13 Rab-GTPase-TBC domain
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.36   10.4   0.0    1.6  1  PF08445.5  FR47-like protein


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-07    0.0012     136     207 ..     765     835 ..     722     842 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.8e-07
  PF00566.13 136 dlqileellkkhdpelykhlekeeldlslfaikWfltlfvrelpletvlrlwD.lflegakflllrialailk 207
                    i + l++k+ p+l+  +e+ ++ +   +++ +ltlf  +lp  t+lr +D l++eg++  + ++al+  +
   MMETSP0890-20130614|172_1 765 A-SICSTLFRKRQPHLAGLFERSNFPCNPAVLEVWLTLFPVALPELTLLRWLDvLLFEGWEG-MVNLALIWYD 835
                 3.48999**********************************************8888**966.6666666555 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.3e-05      0.36      53      79 ..     219     245 ..     207     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.3e-05
                --S-EEEEEETT-HHHHHHHHH---B- CS
  PF08445.5  53 rgktvllvvvasNtpsirlyeklGfek 79 
                 g+ ++++v+ +N+++  lye+ Gf +
  MMETSP0890-20130614|172_1 219 TGNVLFALVRKKNDQAHTLYESWGFAV 245
                68889********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       874  (0.0639263); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.44u 0.33s 00:00:01.77 Elapsed: 00:00:01.29
# Mc/sec: 1954.24
//
Query:       MMETSP0890-20130614|174_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        96  (0.00702165); expected 273.4 (0.02)
Passed bias filter:                       86  (0.00629023); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.36s 00:00:00.62 Elapsed: 00:00:00.57
# Mc/sec: 157.00
//
Query:       MMETSP0890-20130614|170_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-33  115.9   0.1    3.2e-33  115.0   0.0    1.4  1  PF08325.5  WLM domain
    3.4e-10   39.4   0.0    7.1e-10   38.3   0.0    1.6  1  PF09409.5  PUB domain
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.029   14.0   0.0    1.6  1  PF01863.12 Protein of unknown function DUF45


Domain annotation for each model (and alignments):
>> PF08325.5  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   7.1e-37   3.2e-33       7     162 ..     144     307 ..     140     385 .. 0.78

  Alignments for each domain:
  == domain 1    score: 115.0 bits;  conditional E-value: 7.1e-37
  PF08325.5   7 rvlkkkpdeedaldiLervaaq..vrpimkerkfkvgtLeEfepnrkv......llGlNvNkGevIeLrLRtpsdkrflpfesiistllHELaHivqgnHdakFykllkelkaevaklqarGyydgflsdgkrlgdsvregk.....eeeeleglrlsgsperlggsss 162
                ++l   +d+++a++iL+r+a++  +r +m+++k+ v tL E+ p+ kv      +lGlN NkG+ I LrLRt++ ++f++f +i+++l HELaH+++++Hda Fy l++ +++++++++ar      +s+  rlg++          +++    +rl + p + +g ++
  MMETSP0890-20130614|170_1 144 QTLSGFADDDKAKNILNRLARDlgIRDVMRRHKWYVPTLAEMPPDGKVgvdpicVLGLNENKGQRILLRLRTDDLQGFRKFLNIKQVLYHELAHNERSQHDAIFYGLVSRIQRQAENVTAR-----AKSNMYRLGGQPHFPIaqrqeKQTYAIAQRLGDTPDHFDGGHE 307
                55667899**************************************99************************************************************************9.....4566666666665543333322222333444444555544444 PP

>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.6e-13   7.1e-10       3      82 ..     376     452 ..     374     457 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.6e-13
  PF09409.5   3 keefkkaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeee..eeflvlpeqseesledlqk 82 
                ++++  a ++L  +l+N   +  ++ky+r+rl+Nk f ++  ++  a+++Le++GF++e+e  ee lvl+   ++++  l++
  MMETSP0890-20130614|170_1 376 PKSLRDAATTLQVILNNAALD--DQKYKRVRLKNKLFMRTAGKFAAALRFLEACGFNREQEnnEEILVLR---RQDPGLLWC 452
                667788889999999998765..**************************************988999998...777766665 PP

>> PF01863.12  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.5e-06     0.029     164     192 ..     227     255 ..     220     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.5e-06
  PF01863.12 164 idYVvvHElaHllemnHskrFwalvekll 192
                 i+ V+ HElaH   ++H + F+ lv+++ 
   MMETSP0890-20130614|170_1 227 IKQVLYHELAHNERSQHDAIFYGLVSRIQ 255
                 5679*********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.95
# Mc/sec: 1167.91
//
Query:       MMETSP0890-20130614|181_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-24   82.4   1.4    8.6e-16   57.1   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    2.8e-21   75.1   0.1    4.3e-21   74.5   0.1    1.3  1  PF13424.1  Tetratricopeptide repeat
    1.6e-13   49.5   3.0    5.1e-08   32.0   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    9.5e-13   46.8   0.3    3.3e-07   29.5   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    6.3e-11   41.2   1.7    2.3e-07   30.0   0.2    2.1  2  PF07719.12 Tetratricopeptide repeat
    4.5e-10   38.8   1.6     0.0002   21.2   0.3    2.7  2  PF13431.1  Tetratricopeptide repeat
    8.4e-10   38.0   1.0      2e-09   36.8   0.7    1.6  1  PF13414.1  TPR repeat
      7e-08   32.8   0.2    9.2e-08   32.4   0.1    1.3  1  PF13432.1  Tetratricopeptide repeat
    1.3e-07   30.7   0.6    0.00025   20.4   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.1e-06   28.3   0.0      0.017   15.3   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
    2.8e-06   27.3   0.2    0.00048   20.4   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    2.4e-05   24.3   0.1     0.0096   16.2   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
    0.00012   21.7   0.4      0.054   13.2   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.015   15.2   0.0       0.02   14.9   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.028   13.5   0.1       0.11   11.6   0.0    1.8  2  PF10516.4  SHNi-TPR
      0.039   13.8   0.1       0.12   12.2   0.0    1.9  1  PF12688.2  Tetratrico peptide repeat
      0.056   13.1   0.2        8.6    6.1   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
       0.12   11.1   0.0       0.12   11.1   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   1.1e-18   8.6e-16       1      42 []       4      45 ..       4      45 .. 0.97
   2 !   25.0   0.1   1.5e-08   1.1e-05       2      25 ..      47      70 ..      46      71 .] 0.91

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 1.1e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +l ++g+y+eA +l+e+al ir++ +G++HPd
  MMETSP0890-20130614|181_1  4 VATGLNNLAWLLDEQGKYDEAKPLYERALRIREETHGPNHPD 45
               6888*************************************8 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.5e-08
  PF13374.1  2 aaalnnLAlalrargryeeAlale 25
               a  lnnLA++l+++g+y+eA +l+
  MMETSP0890-20130614|181_1 47 AINLNNLAVLLNEQGKYDEAKPLY 70
               5569******************98 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.1   5.6e-24   4.3e-21       2      69 ..       2      70 ..       1      71 [] 0.96

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 5.6e-24
  PF13424.1  2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleyl 69
               pd+at lnnla +l ++g+ydeA  lye+al +  +++g++hpd+a  lnnla l++++g+ydeA++++
  MMETSP0890-20130614|181_1  2 PDVATGLNNLAWLLDEQGKYDEAKPLYERALRIrEETHGPNHPDVAINLNNLAVLLNEQGKYDEAKPLY 70
               89*******************************77778****************************998 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.2   6.8e-11   5.1e-08       2      32 ..       6      36 ..       5      37 .. 0.92
   2 !   18.5   0.1   1.3e-06   0.00099       4      24 ..      50      70 ..      47      71 .] 0.92

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 6.8e-11
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                  l+nl+ ++ ++gkydeA   ye+AL++++
   MMETSP0890-20130614|181_1  6 TGLNNLAWLLDEQGKYDEAKPLYERALRIRE 36
                579*************************975 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.3e-06
                HHHHHHHHHHTT-HHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyy 24
                l+nl++++ ++gkydeA   y
   MMETSP0890-20130614|181_1 50 LNNLAVLLNEQGKYDEAKPLY 70
                79***************9877 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   4.3e-10   3.3e-07       2      34 ..       8      40 ..       7      42 .. 0.91
   2 !   16.0   0.0     9e-06    0.0068       2      22 ..      50      70 ..      49      71 .] 0.94

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 4.3e-10
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
               l+nLa+l  ++g+y++A  lyeraL+++++  +
  MMETSP0890-20130614|181_1  8 LNNLAWLLDEQGKYDEAKPLYERALRIREETHG 40
               89*********************9999988765 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 9e-06
  PF13176.1  2 llnLarlysrlgdyekAiely 22
               l+nLa+l  ++g+y++A  ly
  MMETSP0890-20130614|181_1 50 LNNLAVLLNEQGKYDEAKPLY 70
               89***************9988 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2     3e-10   2.3e-07       1      31 [.       5      35 ..       5      38 .. 0.92
   2 !   11.0   0.1   0.00037      0.28       3      24 ..      49      70 ..      47      71 .] 0.88

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 3e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a +l+nl++++ ++g+y+eA+ ++e+Al++ 
   MMETSP0890-20130614|181_1  5 ATGLNNLAWLLDEQGKYDEAKPLYERALRIR 35
                5689************************986 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00037
                HHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleaf 24
                 l+nl+ ++ ++g+y+eA+ ++
   MMETSP0890-20130614|181_1 49 NLNNLAVLLNEQGKYDEAKPLY 70
                6899**************9887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05    0.0096      10      33 ..       2      25 ..       1      26 [. 0.87
   2 !   21.2   0.3   2.6e-07    0.0002       2      33 ..      28      67 ..      27      68 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-05
  PF13431.1 10 PnnadaynnLAelllnnGdleeAe 33
               P+ a  +nnLA+ll ++G+++eA+
  MMETSP0890-20130614|181_1  2 PDVATGLNNLAWLLDEQGKYDEAK 25
               5556779***************97 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 2.6e-07
  PF13431.1  2 yekaleld........PnnadaynnLAelllnnGdleeAe 33
               ye+al++         P+ a ++nnLA+ll ++G+++eA+
  MMETSP0890-20130614|181_1 28 YERALRIReethgpnhPDVAINLNNLAVLLNEQGKYDEAK 67
               6666666333334111666*******************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.7   2.6e-12     2e-09       4      58 ..       6      67 ..       3      71 .] 0.85

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 2.6e-12
  PF13414.1  4 ealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAl 58
                 l++l+  l ++g+ydeA  +ye+Al+++     pn+++    ++nlA ++ ++g +y+eA 
  MMETSP0890-20130614|181_1  6 TGLNNLAWLLDEQGKYDEAKPLYERALRIReethgPNHPDvaiNLNNLAVLLNEQG-KYDEAK 67
               56899999999******************7777777776666599***********.6***96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   1.2e-10   9.2e-08       3      53 ..      11      69 ..       3      71 .] 0.94

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.2e-10
  PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaal 53
               lA +l ++G+ydeA +++e+al+          P+ a  l +la++l ++g++deA  l
  MMETSP0890-20130614|181_1 11 LAWLLDEQGKYDEAKPLYERALRIReethgpnhPDVAINLNNLAVLLNEQGKYDEAKPL 69
               899999************99999999*****9999*********************755 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.3e-07   0.00025       3      32 ..       7      36 ..       5      39 .. 0.90
   2 !    9.2   0.1    0.0013      0.95       4      22 ..      50      68 ..      47      71 .] 0.89

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.3e-07
               -TTT---HHHHTT-HHHHHHHHH---HHHH CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkp 32
                ++nl+ ++ + G+yd+Ak  +e+al +  
  MMETSP0890-20130614|181_1  7 GLNNLAWLLDEQGKYDEAKPLYERALRIRE 36
               589***********************9975 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
               TTT---HHHHTT-HHHHHH CS
  PF13181.1  4 yynlGdiYrqlGdydkAke 22
               ++nl+ ++ + G+yd+Ak 
  MMETSP0890-20130614|181_1 50 LNNLAVLLNEQGKYDEAKP 68
               789**************96 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-05     0.017       4      26 .]       8      30 ..       5      30 .. 0.90
   2 !   11.0   0.0   0.00056      0.43       6      21 ..      52      67 ..      50      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.2e-05
               H---HHHHHH-------HHHHHT CS
  PF07721.9  4 llaLArallalGdldeAraller 26
               l +LA++l ++G +deA  l er
  MMETSP0890-20130614|181_1  8 LNNLAWLLDEQGKYDEAKPLYER 30
               569**************999987 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00056
               --HHHHHH-------H CS
  PF07721.9  6 aLArallalGdldeAr 21
               +LA +l ++G +deA 
  MMETSP0890-20130614|181_1 52 NLAVLLNEQGKYDEAK 67
               8**************6 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.3e-07   0.00048       4      41 ..       8      50 ..       5      52 .. 0.87
   2 ?    5.8   0.0     0.031        23       6      24 ..      52      70 ..      49      71 .] 0.88

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.3e-07
  PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaealllL 41
               l  la++l ++G +deA  l++ral+     ++P+++++ ++L
  MMETSP0890-20130614|181_1  8 LNNLAWLLDEQGKYDEAKPLYERALRireetHGPNHPDVAINL 50
               5679*********************977777789999988776 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.031
  PF13428.1  6 alarallalGdpdeAiall 24
                la +l ++G +deA  l+
  MMETSP0890-20130614|181_1 52 NLAVLLNEQGKYDEAKPLY 70
               69999**********9886 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-05    0.0096       5      28 ..      10      33 ..      10      35 .. 0.93
   2 ?    6.4   0.0     0.017        13       5      23 ..      52      70 ..      52      71 .] 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la++++++g++deA+ ++er ++
  MMETSP0890-20130614|181_1 10 NLAWLLDEQGKYDEAKPLYERALR 33
               69*******************986 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.017
               HHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAleal 23
               +la ++ ++g++deA+ ++
  MMETSP0890-20130614|181_1 52 NLAVLLNEQGKYDEAKPLY 70
               6899999999*****9776 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.1e-05     0.054      15      34 ..      15      34 ..       5      38 .. 0.87
   2 !    7.2   0.0    0.0053         4       5      28 ..      47      70 ..      45      71 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.1e-05
                HHHTT-HHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlel 34
                 De+gky+eA  lY+ Al +
   MMETSP0890-20130614|181_1 15 LDEQGKYDEAKPLYERALRI 34
                7****************976 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0053
                HHHHHHHHHHHHHTT-HHHHHHHH CS
  PF04212.13  5 AlelikkAveaDeagkyeeAlelY 28
                A+ l + Av   e+gky+eA  lY
   MMETSP0890-20130614|181_1 47 AINLNNLAVLLNEQGKYDEAKPLY 70
                77788899999*********9999 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.6e-05      0.02      35      77 ..      15      66 ..       5      71 .] 0.51

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.6e-05
               HHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHH CS
  PF12895.2 35 lylngeykrAyellrk......leldssslgcry...llArcllklgkydeA 77
               l ++g+y++A  l+++      + + +++++ ++    lA  l ++gkydeA
  MMETSP0890-20130614|181_1 15 LDEQGKYDEAKPLYERalrireETHGPNHPDVAInlnNLAVLLNEQGKYDEA 66
               5556666666555555555554444445555555322233444455556665 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.11      13      37 ..      17      41 ..      17      42 .. 0.93
   2 ?   -0.7   0.0         1   7.8e+02      13      20 ..      59      66 ..      58      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00015
  PF10516.4 13 EnEnFpqAveDlrkaLeLreqllpp 37
               E++++++A   +++aL +re+++ p
  MMETSP0890-20130614|181_1 17 EQGKYDEAKPLYERALRIREETHGP 41
               899******************9876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1
  PF10516.4 13 EnEnFpqA 20
               E++++++A
  MMETSP0890-20130614|181_1 59 EQGKYDEA 66
               899***99 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.12       8      29 ..      12      33 ..       5      71 .] 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00016
  PF12688.2  8 agarDstGeeakAvplYrrAla 29
               a   D  G+ ++A plY+rAl 
  MMETSP0890-20130614|181_1 12 AWLLDEQGKYDEAKPLYERALR 33
               567899**************95 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.011       8.6      14      27 ..      18      29 ..      11      37 .. 0.81
   2 ?    5.4   0.0      0.02        15      13      23 ..      59      69 ..      52      71 .] 0.77

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.011
               TT-HHHHHHH..HH CS
  PF07720.7 14 kkkyqeArelfsYa 27
               ++ky+eA  l  Y+
  MMETSP0890-20130614|181_1 18 QGKYDEAKPL--YE 29
               9******888..65 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.02
               HTT-HHHHHHH CS
  PF07720.7 13 nkkkyqeArel 23
                ++ky+eA  l
  MMETSP0890-20130614|181_1 59 EQGKYDEAKPL 69
               69******666 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.12      42      96 ..       7      61 ..       4      71 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
  PF04910.9 42 tLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnassgkirlnyer 96
               +L +l+ ++ eqg++ +A  l eraL i e+   p+   + +n ++  ++ln + 
  MMETSP0890-20130614|181_1  7 GLNNLAWLLDEQGKYDEAKPLYERALRIREETHGPNHPDVAINLNNLAVLLNEQG 61
               6889999******************************99999*999999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.88
# Mc/sec: 193.34
//
Query:       MMETSP0890-20130614|183_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|175_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   27.8 112.5    0.00045   19.3  12.0    7.2  4  PF04886.7  PT repeat
  ------ inclusion threshold ------
      0.059   12.9   0.7       0.15   11.6   0.5    1.6  1  PF01569.16 PAP2 superfamily
       0.19   10.6   0.2          7    5.5   0.0    2.2  2  PF10261.4  Inositol phospholipid synthesis and fat-storage-inducing TM


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0  22.5      0.93   4.2e+03       2      35 ..     161     194 ..     156     237 .. 0.87
   2 ?   -3.8  27.3       1.7   7.7e+03       5      36 .]     303     334 ..     289     345 .. 0.74
   3 !   19.3  12.0     1e-07   0.00045       2      36 .]     336     370 ..     335     370 .. 0.93
   4 !    3.4   4.6     0.009        41       2      15 ..     526     539 ..     525     543 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.93
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ Pt qPT +PT    ++PT  Pt +P++ Pt
  MMETSP0890-20130614|175_1 161 PTSSPTYQPTYGPTKKTISNPTKMPTREPSQIPT 194
                7777777777777777778888888888888776 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.7
  PF04886.7   5 qPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 Pt+qPT  PT  Pt+ PT+q t  Pt+ Pt+
  MMETSP0890-20130614|175_1 303 TPTGQPTRVPTPRPTPTPTGQSTRVPTTRPTP 334
                56777777777777777777777777766664 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 1e-07
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                pT++Pt  PT  P+  Pt +PT++Pt qPt +P++
  MMETSP0890-20130614|175_1 336 PTEHPTRVPTIRPSPTPTMEPTQSPTYQPTLEPQE 370
                999***************************99985 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.009
  PF04886.7   2 pTaqPteqPTvqPT 15 
                +Ta Pt +PT  P+
  MMETSP0890-20130614|175_1 526 TTASPTQRPTASPS 539
                56666666666664 PP

>> PF01569.16  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   3.2e-05      0.15      27      75 ..     537     589 ..     495     596 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
                 -TTT----HHHHH--------.........S-SS----TTT---HHHHHHHH------ CS
  PF01569.16  27 RPdvlarddilldptegkasl.........fpsfPSgHaafafaaalllalllkrklg 75 
                  P v+    ++++ +     +         ++sf S H+a+ f++a+l++lll + l+
   MMETSP0890-20130614|175_1 537 SPSVVSTLLNPTTIS-----TlsskkkdngSRSFISPHTAAIFLLAILFFLLLVSYLA 589
                 344444444444443.....13444689999*******************99987765 PP

>> PF10261.4  Inositol phospholipid synthesis and fat-storage-inducing TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0015         7      76     107 ..     132     188 ..     120     262 .. 0.61
   2 ?    2.9   0.1    0.0091        42     192     220 ..     566     594 ..     521     597 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0015
  PF10261.4  76 imdrifvltGGkCsedsfdsagnvnakfqds.........................q 107
                ++++i  l GGkCs+++++++  ++++ + +                         +
  MMETSP0890-20130614|175_1 132 VLEKINILQGGKCSNSDSNDEDIEEETPHPTssptyqptygptkktisnptkmptrE 188
                4689**********9988766655555444446666666666655555555555550 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0091
  PF10261.4 192 elpvlllllllglwvwmllvTaiyFHtil 220
                  p++++++ll++ ++ llv  + +H ++
  MMETSP0890-20130614|175_1 566 ISPHTAAIFLLAILFFLLLVSYLAYHVFT 594
                46789999******************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:01.37
# Mc/sec: 1331.12
//
Query:       MMETSP0890-20130614|179_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-29  101.9   0.0    3.2e-29  101.1   0.0    1.4  1  PF01661.16 Macro domain
     0.0035   16.9   0.0     0.0065   16.0   0.0    1.4  1  PF02146.12 Sir2 family


Domain annotation for each model (and alignments):
>> PF01661.16  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   4.7e-33   3.2e-29       1     118 []     116     241 ..     116     241 .. 0.93

  Alignments for each domain:
  == domain 1    score: 101.1 bits;  conditional E-value: 4.7e-33
                 EEEE-TT---.....-S--HHHHHHHH--HHHHHH.HHHHHHHHH--TT-E.EEEE-GGCSSSEEEEEE-------.--CCHHHHHHHHHHHHHHHHHHTT-SEEEEE-TT-------HHHHHHHH CS
  PF01661.16   1 VNAaNsnllg.....ggGvagaihraagkalkeec.kelekkqggillGea.vvtpaynlpakyvihavgplftss.kskeeeellasayknalelaeekgiksvafPaistGifgvpweeaaevl 118
                 VNAaN+ +lg     +++v+++ihr ag++l++ec +++ k+ ++++ G+  ++t++y+lpak+vih+ gp+++++  +  ++ +la+ay n l+la  ++i+s+afP+istG+fg+p +eaa+++
   MMETSP0890-20130614|179_1 116 VNAANEGGLGcyqpgHRCVDNQIHRCAGPRLRAECrQQMYKRASPLAAGTSpIITNGYRLPAKHVIHVTGPQIKQGfPTSYQALQLAQAYTNTLDLALAHNIRSIAFPCISTGLFGFPSDEAARIA 241
                 9*************9********************555666677799999757899*****************98899999999***************************************996 PP

>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.4e-07    0.0065      49     139 ..     359     460 ..     348     493 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.4e-07
                 HHHCCCCCCT..S---HHHHHHHH.HHH---EEEEEE--SS-HHHH----..SEEE----TTEEEETT.TS-EEEECCGGTCCCHH--...........B-ST-- CS
  PF02146.12  49 ynlarellpkaeakpnaaHkflkk.lekkgkllrliTQNidnLekkaGsk..kvvelHGslakakcvk.Ceakesgeelkeeieaekve..........ecekcg 139
                 y +a++  +  +++pn+a ++l+k l++ +    ++T N+d+  ++aG    k++   G+ + ++c+  C+      e++++++ + ++          +c++cg
   MMETSP0890-20130614|179_1 359 YLVAHMHNQRRRFQPNPAYYALHKaLQDLD--IFIYTSNVDGCFERAGFDkdKIYSPQGDWKYFQCSLpCSRDA-FWEAENDLDLALPHvpdlpqdtipRCKRCG 460
                 566777777789*********987255544..789*************99899***********9986465532.222333333222224456666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.40s 00:00:01.30 Elapsed: 00:00:00.73
# Mc/sec: 1828.45
//
Query:       MMETSP0890-20130614|180_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-05   21.7   9.7     0.0011   18.0   4.1    2.2  2  PF05048.8  Periplasmic copper-binding protein (NosD)
    0.00013   21.9  21.1         14    6.0   0.3    9.2  9  PF02415.12 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat


Domain annotation for each model (and alignments):
>> PF05048.8  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   4.1   1.6e-07    0.0011      22     144 ..      45     181 ..      11     207 .. 0.63
   2 !    7.6   0.8   0.00024       1.6      26     138 ..     158     281 ..     146     292 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-07
  PF05048.8  22 snntienntisksrdgiylsessnntisnntisnn...ryGihlegssnntienntasnns..sGialmsss......nntisnNtisnneeGillsgssn....ntisnNtisnngkgiflenssnntitgNriesn 144
                ++ +++n++++ s  g+++   +++t+ ++ ++ +     G  + +ss+ +i++ ++s ns  +G a++ s       + ti+nN++s+n  Gi+l++s+     + ++ N +  +g ++ +e++s  t  +N +e+n
  MMETSP0890-20130614|180_1  45 EDLEFKNGYTDGSGGGLSILGGAKVTLVRCIFTSShadTGGAVYISSSDLIITDSILSFNSarDGSAIYASFgivkllDTTIKNNNASHNGGGIMLKSSHCdskySRFQSNSA-MSGGAFAIEQDSVLTSDENFFEQN 181
                45555677777777777888888888888866666666777777777788888888887777777777777666666666888888888888888887765333466777777.555556666666666667777777 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00024
  PF05048.8  26 ienntisksrdgiylsessnntisnntisnnryGihlegssn...ntienntasnnssGialmsssnntisnNtisnnee...Gillsgssn.....ntisnNtisnngkgiflens....snntitg 138
                ++++++  ++d++   +s++n +++n +  +  +i+l+ s +    +i +n   +++  ia  +ss  t+  ++++nn+    G l ++s +     + +++N +   g gifl +     +++ +++
  MMETSP0890-20130614|180_1 158 MSGGAFAIEQDSV--LTSDENFFEQNVALIG-GAIFLTESTSgimKSIFKNGEAEQGGAIAARGSSLYTL-SCNFRNNTAqlgGALWYDSGDwidelSVLTENSADMMGGGIFLGQVvynsTGTFLSN 281
                4444444444444..5666666666633333.56777777775553333443334445666666662244.333444444454777777777777777788888877777777765533213333333 PP

>> PF02415.12  Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.077   5.3e+02      17      25 ..      53      61 ..      12      63 .. 0.88
   2 ?    1.1   0.1     0.075   5.1e+02      16      27 ..      78      89 ..      74      90 .. 0.78
   3 ?    2.9   0.0     0.021   1.4e+02       7      27 ..     104     114 ..     101     115 .. 0.82
   4 !    6.0   0.3     0.002        14       2      25 ..     124     138 ..     123     139 .. 0.88
   5 !    3.9   0.1      0.01        68       3      26 ..     151     164 ..     150     166 .. 0.83
   6 ?    3.7   0.0     0.011        76       4      26 ..     178     190 ..     177     192 .. 0.81
   7 ?    2.7   0.1     0.024   1.6e+02      19      27 ..     208     216 ..     201     217 .. 0.78
   8 !    5.5   0.0     0.003        20       2      25 ..     226     239 ..     225     240 .. 0.85
   9 ?    0.6   0.0      0.11   7.7e+02       5      26 ..     254     266 ..     251     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.077
  PF02415.12 17 paaggGGAI 25
                +++g+GG++
   MMETSP0890-20130614|180_1 53 YTDGSGGGL 61
                789999987 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.075
  PF02415.12 16 tpaaggGGAIya 27
                ++ a  GGA y 
   MMETSP0890-20130614|180_1 78 SSHADTGGAVYI 89
                5677889**995 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.021
  PF02415.12   7 NtatvsftptpaaggGGAIya 27 
                 N+a           +G AIya
   MMETSP0890-20130614|180_1 104 NSA----------RDGSAIYA 114
                 444..........9******9 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.002
  PF02415.12   2 itFsnNtatvsftptpaaggGGAI 25 
                 +t++nN a         + +GG+I
   MMETSP0890-20130614|180_1 124 TTIKNNNA---------SHNGGGI 138
                 7999****.........9999998 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.01
  PF02415.12   3 tFsnNtatvsftptpaaggGGAIy 26 
                 +F +N+a           +GGA+ 
   MMETSP0890-20130614|180_1 151 RFQSNSA----------MSGGAFA 164
                 6999999..........9999985 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.011
  PF02415.12   4 FsnNtatvsftptpaaggGGAIy 26 
                 F+ N a            GGAI+
   MMETSP0890-20130614|180_1 178 FEQNVA----------LIGGAIF 190
                 777888..........89****9 PP

  == domain 7    score: 2.7 bits;  conditional E-value: 0.024
  PF02415.12  19 aggGGAIya 27 
                 a +GGAI a
   MMETSP0890-20130614|180_1 208 AEQGGAIAA 216
                 789****87 PP

  == domain 8    score: 5.5 bits;  conditional E-value: 0.003
  PF02415.12   2 itFsnNtatvsftptpaaggGGAI 25 
                 + F nNta            GGA+
   MMETSP0890-20130614|180_1 226 CNFRNNTA----------QLGGAL 239
                 78******..........999997 PP

  == domain 9    score: 0.6 bits;  conditional E-value: 0.11
  PF02415.12   5 snNtatvsftptpaaggGGAIy 26 
                 + N+a         +  GG+I+
   MMETSP0890-20130614|180_1 254 TENSA---------DMMGGGIF 266
                 67888.........88899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 1162.82
//
Query:       MMETSP0890-20130614|188_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-12   46.3   0.1      2e-06   27.3   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.5e-10     2e-06      14      39 .]       2      28 ..       1      28 [. 0.95
   2 !   17.4   0.0   1.9e-07    0.0026       6      24 ..      36      54 ..      33      56 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.5e-10
                EEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27 14 Vtcvafspd.gpllasgSrDgtirlWd 39
                V  va+sp+  + lasg +D+ +r+W+
   MMETSP0890-20130614|188_1  2 VITVAWSPSnETQLASGADDNIVRIWN 28
                778***********************7 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.9e-07
                EEESSSSSEEEEEEESSST CS
  PF00400.27  6 tlrgHtspVtcvafspdgp 24
                +l+gH++ V++va++pdg 
   MMETSP0890-20130614|188_1 36 ELEGHEDQVNSVAYAPDGL 54
                699**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.74
# Mc/sec: 184.58
//
Query:       MMETSP0890-20130614|187_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.80
# Mc/sec: 1084.35
//
Query:       MMETSP0890-20130614|191_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.75    9.9  31.7         22    5.2  22.0    2.0  1  PF11759.3 Keratin-associated matrix


Domain annotation for each model (and alignments):
>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  22.0    0.0016        22      13      62 ..       7      56 ..       1      64 [] 0.41

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0016
  PF11759.3 13 ygsggyG.glGcgygCgygsirrlGyGsgfggyGsGsGYG.GyGygcgrpsg 62
                g+ g G g+G g+g g g+  +lG+G g  g+G+G + G G+G g g ++g
  MMETSP0890-20130614|191_1  7 VGA-GVGlGVGTGVGLGVGAGDGLGVGIG-VGFGVGADVGlGVGAGVGLGVG 56
               333.4444444444444444444555555.4555544444444443322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.86
# Mc/sec: 178.33
//
Query:       MMETSP0890-20130614|190_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   11.0   8.5       0.41   10.8   5.9    1.1  1  PF11759.3 Keratin-associated matrix
       0.61    9.6   4.0       0.55    9.8   2.8    1.1  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain
          1    8.9  15.2        1.4    8.4  10.5    1.2  1  PF13488.1 Glycine zipper


Domain annotation for each model (and alignments):
>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.9   8.9e-05      0.41      22      49 ..       2      26 ..       1      34 [. 0.38

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.9e-05
  PF11759.3 22 GcgygCgygsirrlGyGsg.fggyGsGsG 49
               G g+g+g g     G+Gsg ++g GsG+G
  MMETSP0890-20130614|190_1  2 GTGVGSGVG----TGVGSGvGTGVGSGVG 26
               333444433....2222220122333332 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.8   0.00012      0.55      60      95 ..       3      29 ..       1      51 [. 0.59

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
  PF13436.1 60 aavGAaagaaaggagagaaiGAaaGllvGaaaGaga 95
               +         +g+ g g+++G ++G+ vG+ +G+g+
  MMETSP0890-20130614|190_1  3 TG--------VGS-GVGTGVGSGVGTGVGSGVGTGE 29
               33........344.5555555555555555555554 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  10.5   0.00031       1.4      14      39 ..       2      26 ..       1      31 [. 0.47

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00031
  PF13488.1 14 GaaaggagkGAliGAavGaaaGaliG 39
               G+++g  g+G+ +G +vG+++G+++G
  MMETSP0890-20130614|190_1  2 GTGVGS-GVGTGVGSGVGTGVGSGVG 26
               444442.4444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.82
# Mc/sec: 163.65
//
Query:       MMETSP0890-20130614|201_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    8.5  12.4        1.6    8.3   8.6    1.0  1  PF01456.12 Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> PF01456.12  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.6   0.00012       1.6      58     106 ..       4      53 ..       1      63 [. 0.55

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00012
  PF01456.12  58 ttttttasttittkttkat..ttt.ttttttttateaPsdavttaeaPtttt 106
                 t +++  s++i  +t +a+  +t+ t  t+t +a e+ + ++tta aP  t+
   MMETSP0890-20130614|201_1   4 TSVAE--SEAICDTTGTAPcqATAdTGATNTSAAEESEAISITTATAPGQTN 53 
                 33333..444443343333113330334555666777788899999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.94
# Mc/sec: 163.16
//
Query:       MMETSP0890-20130614|196_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-65  219.8   0.0    4.2e-65  219.4   0.0    1.2  1  PF00091.20 Tubulin/FtsZ family, GTPase domain
    1.3e-49  167.3   0.0    1.9e-49  166.8   0.0    1.2  1  PF03953.12 Tubulin C-terminal domain


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.4   0.0   6.2e-69   4.2e-65       1     215 [.       3     225 ..       3     226 .. 0.95

  Alignments for each domain:
  == domain 1    score: 219.4 bits;  conditional E-value: 6.2e-69
                 -EEEE-------HHHHHHHH...................................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--..TT---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HHHH CS
  PF00091.20   1 eivvvgvGqcGnqigdelweqlalehsiaad......dkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPs..alevvvqpynailtlkeliehaDavlvldNdallaicgkslkiekeafk 215
                 e + +++Gq+G+q g+++we+++leh+i++d      ++    dd++++fF+e+g g++++r++ vD+ep v +e+++++ ++l+++e++isgk++a+nn+a+G++++g+e+ + +l++ir+ +++c gl++fl +h  gGgTGSGl+s++lerl+ +y ++ ++++++ P    ++ vv+pyn++l+++ l eh D++++ldN+al+++c+++l+ie ++++
   MMETSP0890-20130614|196_1   3 ECICIHIGQGGIQGGNACWELFCLEHGIQPDgqmpsdKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLAFHATGGGTGSGLGSLILERLSVDYGRKSKLSFCISPApqISNAVVEPYNSVLSTHALLEHTDVTFCLDNEALYDVCRRNLDIERPTYT 225
                 6799*****************************999777788999******************************************************************************************************************88766666665555377******************************************99997 PP

>> PF03953.12  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.0   2.8e-53   1.9e-49       1     124 [.     263     392 ..     263     393 .. 0.99

  Alignments for each domain:
  == domain 1    score: 166.8 bits;  conditional E-value: 2.8e-53
                 SS--EEB------S-------S---HHHHHHHTTSGGGSSS--------EEEEEEEEE----TTHHHHHHHHHHHTT---B-------EEEEE----S------......-E-EEEEEEGGGHHHHHHHH CS
  PF03953.12   1 PrlhFlltgyaPltskekasvektsvqeltrqlfdpknimvscdprkgkYlaiallirgdvspkevekaiqrikekksaqfvewipasikvalckksPyvkkas......vsglmlaNtTaiaelFkril 124
                 Pr+hF+lt+yaP++s+eka +e++sv+e+t+++f+p  +m +cdpr+gkY+a++l++rgdv+pk+v++++++ik+k+++qfv+w+p+++k+++++++P+v+++       ++++m+aNtTaiae+++ri+
   MMETSP0890-20130614|196_1 263 PRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGdlarvmRAVCMVANTTAIAEALSRID 392
                 9*******************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:01.29
# Mc/sec: 789.50
//
Query:       MMETSP0890-20130614|203_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-11   43.4   0.0    2.2e-11   43.4   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    3.7e-06   26.4   0.0    4.1e-06   26.3   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.2e-15   2.2e-11      26      69 ..       2      45 ..       1      46 [] 0.59

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.2e-15
  PF13306.1 26 IgeyaFsncsslksitlpsslteigeyaFsncssltsitipssl 69
               Ig  aF +c+sl+++tlp  lt+ig++aF +c+slt++t+p  l
  MMETSP0890-20130614|203_1  2 IGLGAFGRCTSLTHLTLPAGLTTIGDEAFRDCTSLTQLTLPAGL 45
               55566666666666666666666666666666666666666544 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     6e-10   4.1e-06      17      56 ..       3      41 ..       1      43 [. 0.93

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6e-10
  PF13855.1 17 pdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               + gaF+++++L++L L    l++i +eaf +++sL++L L
  MMETSP0890-20130614|203_1  3 GLGAFGRCTSLTHLTLP-AGLTTIGDEAFRDCTSLTQLTL 41
               5689*************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       106  (0.00775307); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.75
# Mc/sec: 146.98
//
Query:       MMETSP0890-20130614|205_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   16.5   0.3     0.0074   16.2   0.2    1.2  1  PF13160.1 Protein of unknown function (DUF3995)


Domain annotation for each model (and alignments):
>> PF13160.1  Protein of unknown function (DUF3995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   5.4e-07    0.0074       1      63 [.      38     105 ..      38     109 .] 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.4e-07
  PF13160.1   1 vlvllalvH.lyWAlGgrwgldaeaipaedv.....kaafaPsaaatllvaaalllaaalvllqagi.vg 63 
                +++++ + H l W +G +w  +   i +++      + +  Ps  + ++v+++l+++a +v+++  i ++
  MMETSP0890-20130614|205_1  38 WMFAFTFSHlLFWLVGFQWDPAR--IYSDNHfnsdgGIPSGPSGSGQFIVTVMLMVVATVVIAAKAIvFQ 105
                7899999**889*******9554..333333366669******************998888777654244 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.54
# Mc/sec: 483.71
//
Query:       MMETSP0890-20130614|208_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-15   54.0   5.2    1.3e-13   50.2   0.3    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.3e-14   53.7   0.3    1.3e-14   53.7   0.2    1.0  1  PF13424.1  Tetratricopeptide repeat
    5.4e-09   35.1   2.1    5.4e-09   35.1   1.4    1.8  2  PF00515.23 Tetratricopeptide repeat
      9e-08   31.3   2.2      9e-08   31.3   1.5    1.6  2  PF07719.12 Tetratricopeptide repeat
      2e-07   30.4   1.5    2.3e-07   30.2   1.0    1.1  1  PF13414.1  TPR repeat
    1.6e-06   27.3   1.1    4.3e-06   25.9   0.1    1.9  2  PF13176.1  Tetratricopeptide repeat
    0.00016   22.1   1.1    0.00018   21.9   0.8    1.1  1  PF13432.1  Tetratricopeptide repeat
    0.00043   19.7   2.3    0.00043   19.7   1.6    1.4  2  PF13181.1  Tetratricopeptide repeat
     0.0018   18.6   0.6     0.0023   18.2   0.4    1.3  1  PF13428.1  Tetratricopeptide repeat
     0.0021   17.9   5.1       0.29   11.3   0.7    2.6  2  PF13431.1  Tetratricopeptide repeat
     0.0052   16.5   0.5     0.0055   16.4   0.3    1.1  1  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.014   15.7   0.4      0.021   15.1   0.3    1.3  1  PF13174.1  Tetratricopeptide repeat
      0.076   12.4   0.0      0.086   12.3   0.0    1.1  1  PF00637.15 Region in Clathrin and VPS


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.3   1.2e-16   1.3e-13       1      42 []       4      45 ..       4      45 .. 0.98
   2 !    6.6   0.4    0.0064       6.7       1      13 [.      46      58 ..      46      59 .] 0.89

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 1.2e-16
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +l ++g+y+eA al+e+a +i ++ +G++HP+
  MMETSP0890-20130614|208_1  4 VATRLNNLAALLEKQGKYNEAKALYERAIEIDEKAYGPNHPR 45
               79***************************************7 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0064
  PF13374.1  1 taaalnnLAlalr 13
               +aa lnnLA +lr
  MMETSP0890-20130614|208_1 46 VAAGLNNLASMLR 58
               7899******997 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.2   1.3e-17   1.3e-14       2      56 ..       2      57 ..       1      59 [] 0.95

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.3e-17
  PF13424.1  2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanly 56
               p++at lnnla +l+++g+y eA +lye+a+e+  + +g++hp++a  lnnla  +
  MMETSP0890-20130614|208_1  2 PQVATRLNNLAALLEKQGKYNEAKALYERAIEIdEKAYGPNHPRVAAGLNNLASML 57
               679999*****************************9*****************865 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   1.4   5.1e-12   5.4e-09       4      33 ..       8      37 ..       5      38 .. 0.94
   2 ?    0.3   0.1      0.53   5.6e+02       1      11 [.      47      57 ..      47      59 .] 0.78

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 5.1e-12
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnPn 33
                l+nl++++ k+gky+eA + ye+A+e++++
   MMETSP0890-20130614|208_1  8 LNNLAALLEKQGKYNEAKALYERAIEIDEK 37
                89*************************975 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.53
                HHHHHHHHHHH CS
  PF00515.23  1 akalynlGnay 11
                a  l+nl+ ++
   MMETSP0890-20130614|208_1 47 AAGLNNLASML 57
                6789***9876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.5   8.6e-11     9e-08       4      33 ..       8      37 ..       5      38 .. 0.92
   2 ?   -1.8   0.0       3.3   3.5e+03       1       9 [.      47      55 ..      47      58 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 8.6e-11
                HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleldPn 33
                l+nl+ +++k+g+y+eA++++e+A+e+d +
   MMETSP0890-20130614|208_1  8 LNNLAALLEKQGKYNEAKALYERAIEIDEK 37
                89*************************976 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.3
                HHHHHHHHH CS
  PF07719.12  1 aealynlGl 9 
                a +l+nl+ 
   MMETSP0890-20130614|208_1 47 AAGLNNLAS 55
                567889886 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   1.0   2.2e-10   2.3e-07       2      46 ..       4      56 ..       3      59 .] 0.87

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.2e-10
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAla 46
               +A  l++l+  l k+g+y eA ++ye+A+e+d     pn++     ++nlA  
  MMETSP0890-20130614|208_1  4 VATRLNNLAALLEKQGKYNEAKALYERAIEIDekaygPNHPRvaaGLNNLASM 56
               67889**************************9888888887777799999965 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   4.1e-09   4.3e-06       2      33 ..       8      39 ..       8      45 .. 0.86
   2 ?    0.4   0.0      0.63   6.6e+02       2      10 ..      50      58 ..      49      59 .] 0.84

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.1e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpl 33
               l+nLa l +++g+y +A  lyera+++++  +
  MMETSP0890-20130614|208_1  8 LNNLAALLEKQGKYNEAKALYERAIEIDEKAY 39
               89*********************888875554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.63
  PF13176.1  2 llnLarlys 10
               l+nLa++ +
  MMETSP0890-20130614|208_1 50 LNNLASMLR 58
               89***9865 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.8   1.8e-07   0.00018       2      43 ..      10      56 ..       9      59 .] 0.87

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.8e-07
  PF13432.1  2 alArallraGdydeAlaaleaalala.....Peaaeallllaeallr 43
                lA +l ++G+y eA a++e+a++ +     P ++++  +l  ++ +
  MMETSP0890-20130614|208_1 10 NLAALLEKQGKYNEAKALYERAIEIDekaygPNHPRVAAGLNNLASM 56
               589*********************999*9998888888888777766 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.6   4.1e-07   0.00043       4      32 ..       8      36 ..       5      39 .. 0.91
   2 ?   -3.2   0.0       8.6   9.1e+03       4       8 ..      50      54 ..      47      57 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.1e-07
               TTT---HHHHTT-HHHHHHHHH---HHHH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
               ++nl+ ++++ G+y +Ak+ +e+a+e++ 
  MMETSP0890-20130614|208_1  8 LNNLAALLEKQGKYNEAKALYERAIEIDE 36
               789************************97 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 8.6
               TTT-- CS
  PF13181.1  4 yynlG 8 
               ++nl+
  MMETSP0890-20130614|208_1 50 LNNLA 54
               56665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.4   2.2e-06    0.0023       5      33 ..       9      37 ..       4      56 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.2e-06
  PF13428.1  5 lalarallalGdpdeAiallrralalaPd 33
                 la++l+ +G + eA al++ra++ + +
  MMETSP0890-20130614|208_1  9 NNLAALLEKQGKYNEAKALYERAIEIDEK 37
               479*********************96532 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.7   0.00028      0.29      16      34 .]       8      26 ..       8      26 .. 0.93
   2 !    8.1   0.1    0.0029         3       1      20 [.      27      54 ..      27      59 .] 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00028
  PF13431.1 16 ynnLAelllnnGdleeAeq 34
               +nnLA ll ++G++ eA++
  MMETSP0890-20130614|208_1  8 LNNLAALLEKQGKYNEAKA 26
               69***************85 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0029
  PF13431.1  1 lyekaleld.....Pnn...adaynnLA 20
               lye+a+e+d     Pn+   a  +nnLA
  MMETSP0890-20130614|208_1 27 LYERAIEIDekaygPNHprvAAGLNNLA 54
               7*******96666666644455555666 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   5.3e-06    0.0055       6      34 ..       6      34 ..       3      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.3e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF04212.13  6 lelikkAveaDeagkyeeAlelYkeAlel 34
                  l + A   +++gky+eA  lY+ A+e+
   MMETSP0890-20130614|208_1  6 TRLNNLAALLEKQGKYNEAKALYERAIEI 34
                5566778889*****************98 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.3     2e-05     0.021       5      28 ..      10      33 ..      10      35 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la +++k+g++ eA++++er i+
  MMETSP0890-20130614|208_1 10 NLAALLEKQGKYNEAKALYERAIE 33
               5888999999***********997 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.1e-05     0.086      74     100 ..       9      35 ..       6      47 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.1e-05
                 THHHHHHHT-SSHHHHHHHH----THH CS
  PF00637.15  74 ekvaklcekadlyeeavilykkinefk 100
                 + +a l+ek+++y+ea+ ly++  e++
   MMETSP0890-20130614|208_1   9 NNLAALLEKQGKYNEAKALYERAIEID 35 
                 7899*****************955554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:01.45
# Mc/sec: 97.51
//
Query:       MMETSP0890-20130614|218_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.21   11.1   0.1    1.4  1  PF06594.6 Haemolysin-type calcium binding protein related domain


Domain annotation for each model (and alignments):
>> PF06594.6  Haemolysin-type calcium binding protein related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.5e-05      0.21       7      36 ..      37      65 ..      31      70 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.5e-05
  PF06594.6  7 agtgDsitiknwfaddygygiEqieFADGt 36
               a +++si+i+++ a++ ++g  + +F+ Gt
  MMETSP0890-20130614|218_1 37 ASSSGSILISSANAGA-SGGSGKLVFSSGT 65
               5689************.************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      126  (0.00921592); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.29s 00:00:00.62 Elapsed: 00:00:00.88
# Mc/sec: 231.47
//
Query:       MMETSP0890-20130614|209_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-57  191.5   0.0    1.2e-56  190.9   0.0    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    1.2e-33  115.1   0.0    2.8e-33  113.8   0.0    1.7  1  PF03143.12 Elongation factor Tu C-terminal domain
    8.2e-18   64.1   0.1    1.9e-17   63.0   0.1    1.7  1  PF03144.20 Elongation factor Tu domain 2
      2e-05   24.4   0.0    5.5e-05   23.0   0.0    1.7  1  PF01926.18 50S ribosome-binding GTPase
    3.3e-05   23.0   0.0    6.2e-05   22.1   0.0    1.4  1  PF04670.7  Gtr1/RagA G protein conserved region
     0.0055   16.4   0.3      0.013   15.2   0.2    1.5  1  PF11987.3  Translation-initiation factor 2
     0.0066   16.8   0.2      0.077   13.3   0.1    2.4  1  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.091   11.8   0.0       0.26   10.3   0.0    1.7  2  PF09439.5  Signal recognition particle receptor beta subunit
      0.091   12.4   0.1       0.32   10.7   0.0    1.9  2  PF02774.13 Semialdehyde dehydrogenase, dimerisation domain


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   8.2e-60   1.2e-56       1     184 [.       5     222 ..       5     226 .. 0.91

  Alignments for each domain:
  == domain 1    score: 190.9 bits;  conditional E-value: 8.2e-60
                 GGEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHH.HC-..............HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.......S-HHHHHHHHHHHHTT--.EEEEEE-TTST.....CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHH............HHHHHHHH CS
  PF00009.22   1 kkirnigiighvDhGKtTltdallykagaiskrgeea.egerl............ldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.......vepqTeevlrlakklgvk.iivviNKiDrv.....eaeleeiveelkekllekylekgeeevpvvpgSalkgegid............aLleaive 184
                 k+++n+++ighvD+GK+T+t++l+yk+g i+kr+ e+ e+e++            ld+lk+erergiTi++a +++e  + k+ +++iD+PGH+dF+k++i+g++++D+a+lv+d++ G          qT+e++ la +lgvk +iv++NK+D+v     ea+++ei++e++  +l+k+++k   ++p+vp+S++ g+++              Llea+++
   MMETSP0890-20130614|209_1   5 KTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKfEKEAAelgkasfkyawvLDNLKAERERGITIDIALWKFE--SPKYYFTVIDAPGHRDFIKNMITGTSQADVAILVIDSSVGgfeagisKDGQTREHALLAFTLGVKqMIVAMNKMDDVsvkygEARYKEIKQEVS-SYLKKVGYKPM-KIPFVPISGWMGDNMIdksanmpwykgpFLLEALDN 222
                 579********************************9973344467899999**************************..**************************************9999999999**********************************************.788******95.*************88666666666666556777666 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   1.9e-36   2.8e-33       2      96 ..     322     429 ..     321     430 .. 0.95

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 1.9e-36
  PF03143.12   2 ikahtkfkAqvyvlnkptpikagYrpvlyvrTadvtgkivellkkld..sekk.....efvkpGdnvkvevelikpiavekgk......rFaiReggrTvavGvvtev 96 
                 +k +++f Aqv+++n+p++i+agY+pvl+++Ta+v++k+ el++k+d  s+k+     +fvk+Gd+++ ++ ++kp++ve++       rFa+R++++TvavGv+++v
   MMETSP0890-20130614|209_1 322 AKGAASFYAQVIIMNHPGQISAGYSPVLDCHTAHVACKFSELNQKMDrrSGKVmeenpKFVKSGDACMTTLVPTKPLCVESFAdypplgRFAVRDMRQTVAVGVIKNV 429
                 67889******************************************97666699999************************************************98 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   1.2e-20   1.9e-17       1      73 [.     248     314 ..     248     315 .. 0.94

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 1.2e-20
                 EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                 Gtv  grv++G+lk+G+ v +    t+ +   t+v+s+e+++++l eav+g+n+G++v+ + +++ +++G + 
   MMETSP0890-20130614|209_1 248 GTVPVGRVETGVLKPGMVVTF--APTQLS---TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKE-LRRGYVA 314
                 9********************..777566...*********************************.8***985 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.6e-08   5.5e-05       2     114 .]      10     154 ..       9     154 .. 0.63

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.6e-08
                 EEEE--TT---HHHHHHHH.........CSTCTE.........................ETS-TT-SSSESEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS.......HHHH....HHHHHHHHHHTCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLt.........gekaak.........................vsdypgtTrditenevkkek..iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa.......vlke....adkellneleakkplilvlnk 114
                 ++++G+  +GKSt    L+              +                          +   g T di   ++++ k  ++++D PG        +   +ik+++    +adv++lv+d+s           +     +++ll+ +   k++i+++nk
   MMETSP0890-20130614|209_1  10 LVVIGHVDAGKSTTTGHLIykcggidkrT----IekfekeaaelgkasfkyawvldnlkAERERGITIDIALWKFESPKyyFTVIDAPGHR------D---FIKNMITGTSQADVAILVIDSSVggfeagiS--KdgqtREHALLAFTLGVKQMIVAMNK 154
                 689***************85544332220....13344444455556666666666655777777777775544555556679******42......3...7889999*************76666554321..13333333333333356777777776 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.1e-08   6.2e-05      11     152 ..      50     186 ..      46     198 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.1e-08
  PF04670.7  11 GKtSmrs.iiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeil.eallqyspeak.vfvlihKmDlisedereeifeerkeeireeiedleieel 152
                GK S +   +++n+ a+   + g+Tid+   +++ + + ++ ++D +G  +f++n +     +  s+ +v i V+D+++  +e+ ++k  ++  +all +   +k + v ++KmD +s ++ e  ++e+k+e+++ +++++++ +
  MMETSP0890-20130614|209_1  50 GKASFKYaWVLDNLKAER--ERGITIDIALWKFE-SPKYYFTVIDAPGHRDFIKNMI-----TGTSQADVAILVIDSSVGGFEAGISKDGQTReHALLAFTLGVKqMIVAMNKMDDVSVKYGEARYKEIKQEVSSYLKKVGYKPM 186
                666666414677776665..56899999999997.5669****************75.....6678999*********876555554443333033444444444156789***************************9998744 PP

>> PF11987.3  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   8.3e-06     0.013      25     104 ..      91     170 ..      88     174 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.3e-06
  PF11987.3  25 DvqGsleAlkesLeklsteevkvkvihagvGaitesDvtlAsasnaiilgFnvradakakklaeeegvkirlysvIYkli 104
                D  G  + +k+ ++  s+ +v + vi ++vG+ +    ++ ++++  +l+F   +++ + ++ + ++v++++ +  Yk i
  MMETSP0890-20130614|209_1  91 DAPGHRDFIKNMITGTSQADVAILVIDSSVGGFEAGISKDGQTREHALLAFTLGVKQMIVAMNKMDDVSVKYGEARYKEI 170
                666788889************************9999999********************************99888755 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.1e-05     0.077       2      84 ..      10     119 ..       9     123 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.1e-05
  PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp...........................kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydlt 84 
                +vv+G  ++GKs+    l+++                              ++   e   g t+ + +   +  + ++ + d  g+ ++ k+ +    +ad+++lv+d++
  MMETSP0890-20130614|209_1  10 LVVIGHVDAGKSTTTGHLIYKCGGidkrtiekfekeaaelgkasfkyawvlDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADVAILVIDSS 119
                68999999999998888876655566678888888777777777777777655566666777777777778888888**************75555************97 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.3   3.4e+03       6      23 ..      10      27 ..       6      48 .. 0.75
   2 ?   10.3   0.0   0.00017      0.26      48      87 ..      84     120 ..      67     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.3
               EEEE--TT---HHHHHHH CS
  PF09439.5  6 vllvGlsdsGKTslftrL 23
               ++++G  d+GK +   +L
  MMETSP0890-20130614|209_1 10 LVVIGHVDAGKSTTTGHL 27
               678999999998765555 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00017
                ----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS CS
  PF09439.5  48 gkkltliDfPGheklrqklleklkaksslkglvfvvDSti 87 
                +  +t+iD PGh  + +++++     s++   + v+DS++
  MMETSP0890-20130614|209_1  84 KYYFTVIDAPGHRDFIKNMITG---TSQADVAILVIDSSV 120
                55799**********9999998...677888899****98 PP

>> PF02774.13  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   2.6e+03     155     170 ..     247     262 ..     237     273 .. 0.73
   2 ?   10.7   0.0   0.00021      0.32      40     182 ..     281     429 ..     269     433 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.7
                 --SEEEE-EEEETTCC CS
  PF02774.13 155 tnsvsVGRirkdemgd 170
                   +v+VGR+++    +
   MMETSP0890-20130614|209_1 247 IGTVPVGRVETGVLKP 262
                 5689*****9876555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00021
                 HHHSTTS.GCCCCCCCCCGGBSTCSTBCCTCHHHCHHHHCCCHH.......HHHHCCETE.CEEEEEEEESCEC--EEEEEEEESCSHHHHHHHHHHHHTTSSCEEEES-...CCCCCCHHHHTT-.--SEEEE-EEEETTCCEEEEEEEEESTT CS
  PF02774.13  40 lqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavae.......tkkilefte.kvsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvne...eedrPtpaavagg.tnsvsVGRirkdemgdeglklvvvgDNl 182
                 +++ ++++++v+g ++ +N+    +ke+ +g  +++   k            ++i+ +++ ++sa     Pvl++h++ v +k+++ + ++++   ++ +++ ++v   +   ++ +Pt  + ++   +  + GR+ +  m++   ++v v+ N+
   MMETSP0890-20130614|209_1 281 EMHHESLPEAVPGDNVGFNVKNVSVKELRRG--YVASDSKNDPAkgaasfyAQVIIMNHPgQISAGY--SPVLDCHTAHVACKFSELNQKMDRRSGKVMEENPKFVKSGDacmTTLVPTKPLCVESfADYPPLGRFAVRDMRQ--TVAVGVIKNV 429
                 5667788888999999999999999998888..4444444322200111112344444444777444..5**************94444555555555555455555555666666666655555555666666666666666..3555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.42s 00:00:01.20 Elapsed: 00:00:00.98
# Mc/sec: 1090.59
//
Query:       MMETSP0890-20130614|221_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-23   82.1   0.0    3.7e-23   81.8   0.0    1.1  1  PF04832.7 SOUL heme-binding protein


Domain annotation for each model (and alignments):
>> PF04832.7  SOUL heme-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.7e-27   3.7e-23       2     143 ..      28     156 ..      27     163 .. 0.93

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 2.7e-27
                XBXXXXBXXTTXXXXEEEEEXEEEEEEEEEEESXHHHHHHXXXHHHHHHH....XXXBTTXXXXXXBSXEEEEE......XSXEEEEEEEEXXHHHH.SSXXXBSSTTEEEEEEEEEEEEEEEEXXXX-HHHHHHHHHHHHHHHHH CS
  PF04832.7   2 vEtpkYevlekekdyeiRrYepavvaevtveegsleeaskkgfrrLakYi....fgkNekgekiamTaPVlteaiamtaeeasgkvtvsfvlPskyqletlPePtdedvkleevpartvavirfsGraseeeveekaakLkealea 143
                 Et  +++++++ +yeiR+Y++a v+e+  +        +++f +LakYi    +++N+++++iamTaPV+t+         ++  +++fvlPs+ +  ++PeP d++vkl +  + +++v++  G ++e+ +++k+++L +  ++
  MMETSP0890-20130614|221_1  28 EETYGFKIVAQKLGYEIREYAAANVIEAAND--------SQAFGKLAKYIgvmsKPQNKAEQSIAMTAPVVTTH-------PKSGGVMQFVLPSSLS--SPPEPLDKEVKLVKKGTIQAVVLSWYGQWDEALANKKKDELIACAQN 156
                6999***********************7776........89***********9999*****************8.......46689*********99..*****************************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.93
# Mc/sec: 430.31
//
Query:       MMETSP0890-20130614|213_1  [L=924]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-47  156.9  37.2    7.9e-17   60.5   5.7    3.6  3  PF07496.10 CW-type Zinc Finger
  ------ inclusion threshold ------
        4.9    6.8  11.0        2.1    8.0   0.2    3.8  3  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF07496.10  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   2.3   5.3e-19   3.6e-15       2      47 ..     247     291 ..     246     294 .. 0.93
   2 !   60.5   5.7   1.2e-20   7.9e-17       2      50 .]     596     643 ..     595     643 .. 0.96
   3 !   53.0   6.9   2.6e-18   1.8e-14       2      49 ..     757     805 ..     756     806 .. 0.95

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 5.3e-19
                 EEEE-TTT--EEEE-TTT----TTSS.---GGGSS.-SSS-STTS-- CS
  PF07496.10   2 ywVQCdkClKWRklpeeveeirsklpekWfCsmnp.dkaynsCsape 47 
                 +wV Cd C KWRklp++++   + lpe+WfC+mn+ d++  +C+ape
   MMETSP0890-20130614|213_1 247 NWVECDRCGKWRKLPAHISL--DLLPETWFCEMNSwDTSTANCQAPE 291
                 8*****************99..*************77777******9 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 1.2e-20
                 EEEE-TTT--EEEE-TTT----TTSS.---GGGSS.-SSS-STTS--SS- CS
  PF07496.10   2 ywVQCdkClKWRklpeeveeirsklpekWfCsmnp.dkaynsCsapeele 50 
                 +wVQCd C+KWR+lp   ++  ++lpekWfC+mn  d+++++C+apee e
   MMETSP0890-20130614|213_1 596 QWVQCDRCQKWRRLPGVLDT--KNLPEKWFCEMNVwDNSRRTCEAPEETE 643
                 7******************9..*************99999*******975 PP

  == domain 3    score: 53.0 bits;  conditional E-value: 2.6e-18
                 EEEE-T..TT--EEEE-TTT----TTSS.---GGGSS.-SSS-STTS--SS CS
  PF07496.10   2 ywVQCd..kClKWRklpeeveeirsklpekWfCsmnp.dkaynsCsapeel 49 
                 +wVQC+  +C+KWR+lp+++++  ++lpe+W+C mn+ d+++ sC a ee 
   MMETSP0890-20130614|213_1 757 NWVQCEkrSCRKWRRLPQDIDP--ESLPERWVCAMNSwDPRFASCMADEED 805
                 7********************9..*************99999****99985 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1    0.0059        40      13      24 ..     247     258 ..     239     277 .. 0.79
   2 ?    8.0   0.2    0.0003       2.1      12      46 ..     595     625 ..     587     626 .. 0.69
   3 ?   -1.1   0.7       0.2   1.4e+03      14      24 ..     758     770 ..     755     789 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0059
                 -EEEBSSSSSEE CS
  PF00628.24  13 elvlCdgCkewf 24 
                 ++v Cd+C++w 
   MMETSP0890-20130614|213_1 247 NWVECDRCGKWR 258
                 789*******95 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0003
                 S-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SC CS
  PF00628.24  12 gelvlCdgCkewfHlkClglkleseekpegewlCe 46 
                  ++v+Cd+C++w  l  +  +++    p ++w+Ce
   MMETSP0890-20130614|213_1 595 FQWVQCDRCQKWRRLPGVLDTKN---LP-EKWFCE 625
                 579*********87766555533...33.368886 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.2
                 EEEBS..SSSSEE CS
  PF00628.24  14 lvlCd..gCkewf 24 
                 +v+C+  +C++w 
   MMETSP0890-20130614|213_1 758 WVQCEkrSCRKWR 770
                 6888754588885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.41s 00:00:01.67 Elapsed: 00:00:01.02
# Mc/sec: 2170.82
//
Query:       MMETSP0890-20130614|222_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   44.8   0.0    2.4e-11   44.1   0.0    1.3  1  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.7e-15   2.4e-11       2     220 ..      33     249 ..      32     252 .. 0.67

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.7e-15
                 ---CCCCTCCSSS---SSSSSSS----S..----T.THHHHHHHHHHHHHHHHHH--....------B---S.........--SS--HHHH-SEEE-TSST-.............EEE-T..T---EETTTTEE-B-..--S-GCCS--------.-HHHHHHHHHHH-.........-SHHHHHHHHHH..........HHHHHHHH--............-----TTGGGGSTHHHHHHHHHHHHHHHH CS
  PF00264.15   2 ssydqlagiHgaplkewkeaakknkgyc..iHgsv.lFltWHRpYlllfEqalreecgyaapdvrlPYWdwa.........eeelpedlansaifdkepegk.........gggcvtnplysfkakdltvelgkveedaekkkeaetkrclkrnleatsanqelakqedveellakllsdytgfsntsegagksalslespHnavHvwvGg...........GhmgdvavaafDPiFflHHaniDrlwaiW 220
                 +sy++l+  H+         ++++ g c   H s+ +F+ +HR  l   E  +r +    +p++ +P W  +         + +++ d++                     ++  v+n+   f+++++t + g+v++  ++++ ++ + ++ r +  +s  +++ + +    + +k+ +++ +  +++++         ++H + H  +Gg           G+  +  +a +DP+Ff+ Ha  D l +++
   MMETSP0890-20130614|222_1  33 RSYNELVSSHA--------DDARRFGKClpLHASGaMFFMYHRLLLREAEASVRAVL--DEPNFLFPTWIPTnaddsltpqQGRKHIDPKLAV--------LfgavpgnkdKDYAVDNGA--FRKWPITRRDGEVST--KYHNLQKLPATVIR-F--ESFCDQILNITL--ATRYKRCTQIYDIDTFLNE-------AYELHADWHRIIGGavrcgpetrvpGDFENARTAVNDPVFFFIHAAFDDLLDTF 249
                 57888888888........334444444347886549******************99..9*********999665555443222222233333........1344443344455568888..998888888877776..33333333333333.2..333333333333..1222233555555555555.......889*********************************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 1094.34
//
Query:       MMETSP0890-20130614|237_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.74
# Mc/sec: 488.99
//
Query:       MMETSP0890-20130614|229_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   80.4   0.2    1.4e-22   80.2   0.1    1.1  1  PF00106.20 short chain dehydrogenase
    3.1e-15   56.5   0.0    3.8e-15   56.2   0.0    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    6.5e-09   35.9   0.0    9.6e-09   35.3   0.0    1.3  1  PF13460.1  NADH(P)-binding
      8e-07   28.7   0.1    1.1e-06   28.3   0.1    1.2  1  PF08659.5  KR domain
    0.00013   20.9   0.0    0.00014   20.9   0.0    1.1  1  PF03435.13 Saccharopine dehydrogenase
     0.0014   18.4   0.0     0.0046   16.8   0.0    1.7  2  PF02254.13 TrkA-N domain
     0.0078   15.7   0.0      0.014   14.9   0.0    1.4  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.014   15.6   0.1       0.12   12.7   0.0    2.2  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
      0.087   11.9   0.0       0.13   11.4   0.0    1.2  1  PF05368.8  NmrA-like family


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.1   9.4e-26   1.4e-22       7     166 ..       9     165 ..       3     166 .. 0.94

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 9.4e-26
                 --------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20   7 GGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 G   g+G+a+Ar++ +e + +++l+sr+  a++++++++e+     + +++ +Dv+d+ +l  +l++++ algp+d +v nag    ++ +el+ ++l+  ++ + +g +  ++++ +    ++ g+++++   a+++g p  aa aaakaa  ++a+s+++++
   MMETSP0890-20130614|229_1   9 GYGPGIGAATARKFSKE-GFQVALISRN--ADKLKAATKEIP----NSHAFPADVTDPTSLTSALQSVQSALGPIDCMVYNAGSGLWKSYDELEIDELDYSMKCNCYGLLTAAKAVCPsmqaRGSGSVIITGATAALRGKPKTAAFAAAKAAQRSMAQSLARQL 165
                 55679************.779*******..999999999999....788899****************************************************************99987777*************************************986 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.5e-18   3.8e-15       7     178 ..      13     175 ..       9     197 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.5e-18
                ----HHHHHHHH---EEEE---HH---------------.-------TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE-------------------THHHHHHHHHH----S---EEEE CS
  PF13561.1   7 sigwaiakalaeaGaevilttwvpaklkkkvqelakelp.advvplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvnti 178
                +ig+a a+++ ++G +v+l +++  k    +++ +ke+p ++++p+Dvt++ ++ + +++v++ l g iD +v  ++ +      k++ e++ ++l+ +++ ++y l+  +ka+ p +     gS++ +   a+ r  p+    ++aKAa  s +++lA++l + ++i v  +
  MMETSP0890-20130614|229_1  13 GIGAATARKFSKEGFQVALISRNADK----LKAATKEIPnSHAFPADVTDPTSLTSALQSVQSAL-GPIDCMVYNAGSGLW----KSYDELEIDELDYSMKCNCYGLLTAAKAVCPSMQARGSGSVIITGATAALRGKPKTAAFAAAKAAQRSMAQSLARQLFP-NNIHVSYV 175
                8*********************9876....7777777773569*********************8.****99999998887....8999***************************777777799**************************************9.99999765 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   6.3e-12   9.6e-09       9     132 ..      13     162 ..       4     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 6.3e-12
  PF13460.1   9 ktGrrivkellarghevtalvRnpsklpe....ssgvtivkkDlfdledlaeala.......gvdvvvdaf..garpe......d.............regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelle 132
                 +G +++++  ++g++v +++Rn++kl++     ++ +++  D++d+++l +al+       ++d  v ++  g +++      d              +++k+++ +++a g   +++ +a+ ++r kp++       +f ++ +a++ + + l+
  MMETSP0890-20130614|229_1  13 GIGAATARKFSKEGFQVALISRNADKLKAatkeIPNSHAFPADVTDPTSLTSALQsvqsalgPIDCMVYNAgsGLWKSydeleiDeldysmkcncyglLTAAKAVCPSMQARGSGSVIITGATAALRGKPKT------AAFAAAKAAQRSMAQSLA 162
                599**********************999998766999**********777777771111111455555555333334487776615557777889999******************************9996......555555555555555443 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   7.3e-10   1.1e-06      11     169 ..      13     167 ..       5     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 7.3e-10
                HHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC....----EEEEEEEGGGT-------------HHHHHH---------E CS
  PF08659.5  11 glGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad....epldffvlfSSiagvlgsagqanyaaanaflDalaehrraqglp 169
                g+G+++ar   ++g  +++l+sr+a +    +a+++e+     + ++ +aDv+d+++++++l++v+ + +p++  v+ Ag    +  +e++ ++l+  ++  + G +   +++      +    ++++   a++ g+++ a+ aaa+a + ++a+  ++q  p
  MMETSP0890-20130614|229_1  13 GIGAATARKFSKEGF-QVALISRNADKL---KAATKEIP----NSHAFPADVTDPTSLTSALQSVQSALGPIDCMVYNAGSGLWKSYDELEIDELDYSMKCNCYGLLTAAKAVCPsmqaRGSGSVIITGATAALRGKPKTAAFAAAKAAQRSMAQSLARQLFP 167
                788999999887765.688999992222...22344444....5789*********************************************************999888776555666899999******************************99998765 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   8.9e-08   0.00014       2      84 ..       6      88 ..       5     153 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.9e-08
  PF03435.13  2 lvlGaG.svGqavaellarhgdvdeitvadrtlekaqalaakalglrveaialdvsnyeaLeallkeg.dlv..vnlappilsltvl 84
                +++G+G ++G a+a++ +++g + ++++++r+ +k++a+ +    ++ +a   dv+++++L+++l+    ++  ++++++  +  ++
   MMETSP0890-20130614|229_1  6 VCIGYGpGIGAATARKFSKEG-F-QVALISRNADKLKAATK--EIPNSHAFPADVTDPTSLTSALQSVqSALgpIDCMVYNAGSGLW 88
                789**659***********96.7.9**********999997..679**************999999874332336777666655555 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-06    0.0046       4      58 ..       8      65 ..       5      73 .. 0.86
   2 ?   -1.5   0.0       1.4   2.1e+03     101     107 ..     153     159 ..     124     178 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3e-06
                E---H.HHHHHHCCCHH--..EEEEES-HHHHHHHHH--..-EEEE--TTSHHHHHHT CS
  PF02254.13  4 iGlGr.vGrslaeeLregekdvvvidkdeerveelreeg..levvvgdatdeevLeea 58
                iG+G  +G + a+++++++ +v +i ++ ++++ +++e    +++ +d+td+  L++a
   MMETSP0890-20130614|229_1  8 IGYGPgIGAATARKFSKEGFQVALISRNADKLKAATKEIpnSHAFPADVTDPTSLTSA 65
                6777559**********6657*****************95555************988 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.4
                 GHHHHHH CS
  PF02254.13 101 nakllkk 107
                  ++ + +
   MMETSP0890-20130614|229_1 153 AQRSMAQ 159
                 3333332 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.1e-06     0.014       4      46 ..       7      50 ..       3      76 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.1e-06
                EE---.------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHH CS
  PF02737.13  4 VvGaG.tmGagiAavfaragleVvlvdiseealekalerieksl 46
                ++G G  +Ga  A  f ++g++V l+ +++++l++a+++i +s 
   MMETSP0890-20130614|229_1  7 CIGYGpGIGAATARKFSKEGFQVALISRNADKLKAATKEIPNSH 50
                68888449*******************************98844 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-05      0.12       2      47 ..       4      47 ..       3      71 .. 0.82
   2 ?    0.2   0.0      0.61   9.3e+02       9      27 ..     156     174 ..     153     186 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.6e-05
  PF03807.12  2 igii.GaGn.igealakglaaagaqkheviiaasrspekaeelaeelg 47
                i++  G+G  ig+a a++++++g    +v ++ sr+++k++++ +e+ 
   MMETSP0890-20130614|229_1  4 IAVCiGYGPgIGAATARKFSKEG---FQVALI-SRNADKLKAATKEIP 47
                66644999669************...****89.**********99986 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.61
  PF03807.12   9 nigealakglaaagaqkhe 27 
                 +++++la++l  +++  + 
   MMETSP0890-20130614|229_1 156 SMAQSLARQLFPNNIHVSY 174
                 5899999999988854444 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.4e-05      0.13      10      68 ..      14      72 ..       4      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.4e-05
               HHHHHHHHHHH---EEEEE-S-----HHHHHHHSTTEEE.---TT-HHHHHHHH----EE CS
  PF05368.8 10 qGksvvraslkaghkvralvRdlkselakslkaaGvelv.egdlddkeslvealkgvdvv 68
               +G++ +r + k+g++v  + R+ ++  a   k+ ++     +d+ d +sl +al+ v+++
  MMETSP0890-20130614|229_1 14 IGAATARKFSKEGFQVALISRNADKLKAA-TKEIPNSHAfPADVTDPTSLTSALQSVQSA 72
               899999****************9877665.5999999998*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.81
# Mc/sec: 653.82
//
Query:       MMETSP0890-20130614|246_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.59
# Mc/sec: 255.88
//
Query:       MMETSP0890-20130614|244_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-17   60.8   0.1    7.8e-17   60.7   0.1    1.0  1  PF08373.5  RAP domain
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.038   13.8   0.0    1.1  1  PF01152.16 Bacterial-like globin


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   1.1e-20   7.8e-17       1      40 [.      10      52 ..      10      53 .] 0.93

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 1.1e-20
  PF08373.5  1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyf 40
               ie+dGpth++++  ++ l  g+tk+K riL++lGw vi++pyf
  MMETSP0890-20130614|244_1 10 IEVDGPTHYLKRKgEQRLenGHTKFKSRILRQLGWTVIHVPYF 52
               9************55555************************9 PP

>> PF01152.16  Bacterial-like globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.5e-06     0.038      53      76 ..      12      35 ..       5      47 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.5e-06
                -----HHHHH-----HHHHHTTS- CS
  PF01152.16 53 lGGPkeYserkGhPrlrerHaple 76
                ++GP +Y +rkG  rl++ H +++
   MMETSP0890-20130614|244_1 12 VDGPTHYLKRKGEQRLENGHTKFK 35
                68******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.65
# Mc/sec: 195.40
//
Query:       MMETSP0890-20130614|243_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1416  (0.103569); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.98
# Mc/sec: 1251.97
//
Query:       MMETSP0890-20130614|249_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-06   27.4   0.1    6.4e-05   22.5   0.0    2.5  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.7e-09   6.4e-05       3      34 ..      11      42 ..       9      45 .. 0.85
   2 ?    2.3   0.0     0.011   1.5e+02      13      26 ..      69      82 ..      64      94 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 4.7e-09
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgt 34
                 ++++ + t+ ++cv fsp g+++a+++ D+ 
   MMETSP0890-20130614|249_1 11 ELRIFWEATDVIECVVFSPGGHCFATSGFDNI 42
                56677777999*******************95 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.011
                SEEEEEEESSSTEE CS
  PF00400.27 13 pVtcvafspdgpll 26
                + +++a+spdg+++
   MMETSP0890-20130614|249_1 69 GTESLAYSPDGTVI 82
                5689******7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 414.50
//
Query:       MMETSP0890-20130614|250_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-24   84.8   0.2      3e-24   84.3   0.2    1.2  1  PF00887.14 Acyl CoA binding protein
    8.7e-20   69.3   0.9    4.8e-08   32.3   0.0    3.8  4  PF00023.25 Ankyrin repeat
    7.4e-19   67.6   1.7    2.2e-09   37.4   0.1    3.3  3  PF13637.1  Ankyrin repeats (many copies)
    1.4e-18   66.8   0.0    2.6e-18   66.0   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
      9e-16   57.4   0.1    9.7e-10   38.2   0.0    2.9  3  PF13857.1  Ankyrin repeats (many copies)
    2.8e-11   42.3   0.2    9.3e-05   22.2   0.0    3.8  4  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF00887.14  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.2   1.3e-27     3e-24       1      83 [.       4      83 ..       4      87 .. 0.96

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 1.3e-27
                -SSTHHHHHHHHHH---S.---TTTTTHHHHHHHHTT-------------SHHHHHHHHHHHT----HHHHHHHHHHHHHHH- CS
  PF00887.14  1 leekFeaavktvkklpkkarpsneekleLYglyKqateGdvnskrPglfdvkgkaKwdaWkslkglskeeAkkrYvelleelv 83
                l+++Fe av+ v+k ++   ++ e +l LYglyKqat Gd+++++P ++++++ aKw aW + kglsk++A+++Yv l+++l 
   MMETSP0890-20130614|250_1  4 LQQEFESAVEEVRKKNG---IDVESQLLLYGLYKQATIGDCEQSCPAMWKMEAMAKWRAWIDRKGLSKNDAMQAYVVLAQNLS 83
                689***********998...*********************************************************999886 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.43   9.8e+02       8      23 ..     115     130 ..     109     140 .. 0.79
   2 !   32.0   0.0   2.5e-11   5.7e-08       3      32 ..     144     173 ..     142     174 .. 0.97
   3 !   32.3   0.0   2.1e-11   4.8e-08       2      32 ..     176     206 ..     175     207 .. 0.94
   4 ?   -0.2   0.0      0.41   9.3e+02       1      10 [.     208     217 ..     208     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.43
                 HHHHTTHHHHHHHHHH CS
  PF00023.25   8 lAalrgnlevvklLls 23 
                  Aa++g+l  v+  l 
   MMETSP0890-20130614|250_1 115 RAARSGDLASVEAILA 130
                 5999**9999999887 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.5e-11
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +TPLH+ a rg+  ++  L+++GA++naqd
   MMETSP0890-20130614|250_1 144 RTPLHWSADRGHFHICAKLIQAGAEINAQD 173
                 7****************************9 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 2.1e-11
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G TPL +A+ + ++++++lL+++GAd+ + d
   MMETSP0890-20130614|250_1 176 GLTPLAYAVTCEHPDIITLLIQAGADPLISD 206
                 99*************************8866 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.41
                 TSCBHHHHHH CS
  PF00023.25   1 dGfTPLHlAa 10 
                 dG+TP  +A+
   MMETSP0890-20130614|250_1 208 DGDTPFSIAS 217
                 8****99986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.3e-09     3e-06       3      54 .]     111     163 ..     109     163 .. 0.94
   2 !   37.4   0.1   9.8e-13   2.2e-09       1      54 []     143     196 ..     143     196 .. 0.98
   3 !   14.4   0.0   1.7e-05     0.038      13      41 ..     188     216 ..     187     218 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.3e-09
  PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                +a+ +aa+sg+l  v+ +l+++++  ++ d + +t+Lh  a rg+++i+  L+
  MMETSP0890-20130614|250_1 111 SAIVRAARSGDLASVEAILASDQSASHClDTERRTPLHWSADRGHFHICAKLI 163
                7899********************99999********************9887 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 9.8e-13
  PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                ++t+Lh+ a  g+  +++ L++ g++in++d  G t+L +A+  ++++i+ lL+
  MMETSP0890-20130614|250_1 143 RRTPLHWSADRGHFHICAKLIQAGAEINAQDLGGLTPLAYAVTCEHPDIITLLI 196
                58**************************************************98 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.7e-05
  PF13637.1  13 rlelvklLlekgidinrtdesGntaLhiA 41 
                + +++ lL++ g+d+   de+G+t++ iA
  MMETSP0890-20130614|250_1 188 HPDIITLLIQAGADPLISDEDGDTPFSIA 216
                78999*********************988 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.1e-21   2.6e-18       3      87 ..     115     204 ..     113     206 .. 0.91

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.1e-21
  PF12796.2   3 lAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 Aa++g+l  v+ +l++  +        ++tpLh+ a++g++ i+  L++aga++na+d  g tpL +Av  +h +++ lL+++gad+ +
  MMETSP0890-20130614|250_1 115 RAARSGDLASVEAILASDQSASHcldteRRTPLHWSADRGHFHICAKLIQAGAEINAQDLGGLTPLAYAVTCEHPDIITLLIQAGADPLI 204
                69*************9775555556678999********************************************************976 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.63   1.4e+03      18      36 ..     111     129 ..     107     136 .. 0.83
   2 !   23.8   0.0   1.4e-08   3.3e-05       9      46 ..     136     173 ..     128     173 .. 0.90
   3 !   38.2   0.0   4.3e-13   9.7e-10       1      56 []     162     216 ..     162     216 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.63
  PF13857.1  18 tpLhlAakggalevvrlLl 36 
                +++  Aa+ g+l  v+ +l
  MMETSP0890-20130614|250_1 111 SAIVRAARSGDLASVEAIL 129
                577889******9999998 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.4e-08
  PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadlnlrd 46 
                 +++d++++tpLh+ a +g+ +++ +L+++ga +n++d
  MMETSP0890-20130614|250_1 136 SHCLDTERRTPLHWSADRGHFHICAKLIQAGAEINAQD 173
                468999999**************************987 PP

  == domain 3    score: 38.2 bits;  conditional E-value: 4.3e-13
  PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                L+++g a +na+d+gg tpL +A+ + +++++ lL+++gad+ + d+dg+t++ +A
  MMETSP0890-20130614|250_1 162 LIQAG-AEINAQDLGGLTPLAYAVTCEHPDIITLLIQAGADPLISDEDGDTPFSIA 216
                78999.***********************************************998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.44     1e+03       7      22 ..     114     129 ..     109     135 .. 0.81
   2 !   22.2   0.0   4.1e-08   9.3e-05       2      30 .]     143     171 ..     142     171 .. 0.95
   3 !   14.3   0.0   1.4e-05     0.031       2      29 ..     176     203 ..     175     204 .. 0.94
   4 ?   -1.4   0.0       1.6   3.6e+03       1       9 [.     208     216 ..     208     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.44
  PF13606.1   7 hlAasngrielveaLl 22 
                  Aa++g ++ vea l
  MMETSP0890-20130614|250_1 114 VRAARSGDLASVEAIL 129
                579****999888877 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 4.1e-08
  PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                ++TpLh+ a +g+  ++  L+++ga ina
  MMETSP0890-20130614|250_1 143 RRTPLHWSADRGHFHICAKLIQAGAEINA 171
                69*************************96 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 1.4e-05
  PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                G TpL +A+ + +++++ +L+++gad+ 
  MMETSP0890-20130614|250_1 176 GLTPLAYAVTCEHPDIITLLIQAGADPL 203
                89************************85 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1.6
  PF13606.1   1 nGnTpLhlA 9  
                +G+Tp+ +A
  MMETSP0890-20130614|250_1 208 DGDTPFSIA 216
                79****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.85
# Mc/sec: 670.98
//
Query:       MMETSP0890-20130614|259_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.45s 00:00:00.78 Elapsed: 00:00:00.82
# Mc/sec: 213.33
//
Query:       MMETSP0890-20130614|254_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.6   0.0    4.7e-17   61.5   0.0    1.8  2  PF00201.13 UDP-glucoronosyl and UDP-glucosyl transferase
    3.2e-08   33.2   0.0    6.5e-08   32.3   0.0    1.4  1  PF04101.11 Glycosyltransferase family 28 C-terminal domain
    6.4e-06   25.4   0.2     0.0011   18.1   0.0    2.9  3  PF13528.1  Glycosyl transferase family 1
      0.009   15.6   0.2       0.86    9.1   0.0    2.3  2  PF13439.1  Glycosyltransferase Family 4
  ------ inclusion threshold ------
       0.08   12.9   0.0          1    9.3   0.0    2.7  3  PF13692.1  Glycosyl transferases group 1
      0.081   12.5   0.1       0.19   11.3   0.0    1.6  2  PF03033.15 Glycosyltransferase family 28 N-terminal domain


Domain annotation for each model (and alignments):
>> PF00201.13  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16   3.6e+02     123     158 ..     145     180 ..     132     194 .. 0.80
   2 !   61.5   0.0   2.1e-20   4.7e-17     318     435 ..     335     461 ..     272     470 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.16
  PF00201.13 123 vladavlpcgellAellkiptvyllrdvpgqaaeka 158
                 ++ da +p  +++A++l++p+v++  ++  ++aek 
   MMETSP0890-20130614|254_1 145 LVGDASFPWCKMVAKILDLPLVVSCCSIFYSKAEKE 180
                 6678999999************99888777666664 PP

  == domain 2    score: 61.5 bits;  conditional E-value: 2.1e-20
  PF00201.13 318 pstLarntllvkWlPQndlLgHpktkAFvtHaGangvyEaissGvPmvglPlFgdQtdNakrmeakgaavtl..........nvkemtsedllnAlkevind.ksYkenimrLsslhkDrPvkPLDrav 435
                  + L +n  + + +PQ ++L+   +  F+tH G+n+v Ea+ +G Pm++ P+F+dQ  Na r++a g +v l          n+ ++ +++l +A++ +ind +++k n  r+ +l   r    L+ av
   MMETSP0890-20130614|254_1 335 TQHLPKNFHIRQHVPQRAVLK--IVDIFITHCGMNSVTEALFHGCPMICCPVFADQYTNADRVAALGCGVPLsspfrpnfskNLDHFDAHALRSAVDLLINDyDTFKSNCARVRQLFCQRHRFLLNDAV 461
                 45677888999*********8..6889******************************************977443333322245566778999999999999557999999988887666555555555 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.8e-11   6.5e-08      30     121 ..     317     401 ..     289     407 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.8e-11
                 HHHCHHHC----EC---STT-----EEEE-EESSSSHHHHHHHH-EEEEE-----HHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHH CS
  PF04101.11  30 reeqvlhqtGksnyeevkikveklglkvevfsysdkmaeiikaadlvIsrAGagtiaellalgkplIlvPlpeaaenhqdnnakelakagag 121
                  +++v+   G s ++ v +++  +  ++++ + ++   +++k  d+ I++ G +++ e+l++g+p+I +P       +q+ na  +a  g+g
   MMETSP0890-20130614|254_1 317 AQYHVIFSAGASAKNLVLTQHLPK--NFHIRQHVP-QRAVLKIVDIFITHCGMNSVTEALFHGCPMICCPVFA----DQYTNADRVAALGCG 401
                 578899999988777777773333..367777777.8899*********************************....9********999887 PP

>> PF13528.1  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23   5.3e+02       9      36 ..      41      70 ..      36      82 .. 0.83
   2 !   18.1   0.0   4.6e-07    0.0011     248     298 ..     354     402 ..     305     410 .. 0.85
   3 ?    3.5   0.0     0.013        30      82     114 ..     415     447 ..     405     450 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.23
  PF13528.1  9 gtGnGHisRaralaeaL.r.ghevevllsg 36
               ++  GH+   ++l++ L + g ev++++++
  MMETSP0890-20130614|254_1 41 AEQIGHLNPTLELVRLLiKsGYEVHYFVPE 70
               5678*************9757*****9988 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 4.6e-07
  PF13528.1 248 LaeckavianaGfellsEalylgkpvllvpldgqfEQtsnAaaleelglge 298
                L+  + +i+ +G+++++Eal  g p++  p+    +Q  nA  +  lg+g 
  MMETSP0890-20130614|254_1 354 LKIVDIFITHCGMNSVTEALFHGCPMICCPV--FADQYTNADRVAALGCGV 402
                6777899***********************9..56*************995 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.013
  PF13528.1  82 lvrklvklldasepDlvItDfepisllaaklqg 114
                ++++   +  +s++Dl+I+D++ + +  a+ ++
  MMETSP0890-20130614|254_1 415 NLDHFDAHALRSAVDLLINDYDTFKSNCARVRQ 447
                5555556778999**********9888887765 PP

>> PF13439.1  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00038      0.86      18      48 ..      50      80 ..      41      99 .. 0.85
   2 ?    4.0   0.0     0.014        32      47     112 ..     285     340 ..     272     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00038
  PF13439.1 18 vlelaealarrGheVtvvapevgepleeelv 48
               +lel + l + G+eV++++pe +++  e ++
  MMETSP0890-20130614|254_1 50 TLELVRLLIKSGYEVHYFVPECRRKAVEGVG 80
               79**********************9999833 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
  PF13439.1  47 lvvevvrvpglsfkralrsiafasalrrllkkeefDlvHvnsaaalalallallkvpavltvHntl 112
                +++++  v+g  +++++  + f+  ++ l ++ ++ ++++++a+a          +++vlt+H + 
  MMETSP0890-20130614|254_1 285 VYASMGTVLGQKKWSLRLEPFFDELVKALGDDAQYHVIFSAGASA----------KNLVLTQHLPK 340
                56777888999999************************7777666..........58889999665 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.5   3.4e+03      37      64 ..      36      71 ..      28     104 .. 0.64
   2 ?   -0.8   0.0      0.62   1.4e+03      89     111 ..     241     264 ..     223     280 .. 0.74
   3 ?    9.3   0.0   0.00046         1      16     117 ..     301     398 ..     284     405 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.5
  PF13692.1 37 lviiGk......gpd.elarl.lepnveflgfveel 64
               +v++G+      +p+ el rl  +++ e++ fv+e 
  MMETSP0890-20130614|254_1 36 VVFMGAeqighlNPTlELVRLlIKSGYEVHYFVPEC 71
               566666555545555544444466677777777664 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.62
  PF13692.1  89 leylaaGlPvvasdig.aeglpee 111
                + y++a +P v  d+g  +g +e 
  MMETSP0890-20130614|254_1 241 IKYFGASMPAVLPDFGiSSGDYES 264
                679*********999634444443 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00046
  PF13692.1  16 dleelleealprlreklpdvelviiGk.gpd..e..larllepnveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeeegvggl 117
                 le +++e++++l    +d++ ++i + g+      l + l++n++++  v++  ++l+  d+++  +    g+ +++ e+l  G+P+++ ++ a+++   ++v++l
  MMETSP0890-20130614|254_1 301 RLEPFFDELVKAL---GDDAQYHVIFSaGASakNlvLTQHLPKNFHIRQHVPQR-AVLKIVDIFITHC----GM-NSVTEALFHGCPMICCPVFADQYTNADRVAAL 398
                4566666654444...466777776553333123433333577********986.677999****977....34.469************99845555554555555 PP

>> PF03033.15  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.3e-05      0.19      10      55 ..      45      94 ..      36     135 .. 0.86
   2 ?   -3.0   0.0       2.2   5.1e+03      81     133 ..     299     351 ..     288     356 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.3e-05
                ---HHHHHHHHHHHC---EEEEEETCCCHHHHCC---EEEE----....S CS
  PF03033.15 10 GdvePavAlareLqrrGheVrlatppgleefveeagleavpigpd....v 55
                G++ P + l r L + G+eV+  +p+  ++ ve  g  ++++g +    +
   MMETSP0890-20130614|254_1 45 GHLNPTLELVRLLIKSGYEVHYFVPECRRKAVEGVGAIFEAYGEKdwslM 94
                9******************************************9844441 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.2
                 HHHHHHHHHCCCCHH----EEEE--HHHHHHHHCCCCCH----EECCCCCCCC CS
  PF03033.15  81 keilkeakpdvvvgfggyvadlaliaallagipanvaEqngipglvnkllprr 133
                    l+++++++v + g+ ++  +++ a ++   ++++ ++   ++  +++p+r
   MMETSP0890-20130614|254_1 299 SLRLEPFFDELVKALGDDAQYHVIFSAGASAKNLVLTQHLPKNFHIRQHVPQR 351
                 55566677777777776666666666666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.84
# Mc/sec: 1423.55
//
Query:       MMETSP0890-20130614|260_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.77
# Mc/sec: 1086.14
//
Query:       MMETSP0890-20130614|255_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1956  (0.143066); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.87u 0.39s 00:00:02.26 Elapsed: 00:00:01.34
# Mc/sec: 1296.54
//
Query:       MMETSP0890-20130614|268_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-09   35.7  69.4    1.4e+04  -12.1  48.1    3.0  1  PF13488.1  Glycine zipper
      8e-08   31.5  70.4    1.4e+04  -15.1  48.8    3.2  1  PF13441.1  YMGG-like Gly-zipper
    2.2e-05   23.9  51.6    0.00058   19.3  14.6    2.7  3  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
     0.0057   16.7  35.9    1.4e+04  -17.2  24.9    4.9  1  PF10247.4  Reactive mitochondrial oxygen species modulator 1
     0.0079   15.7  70.9        1.4    8.5  25.3    3.3  2  PF05433.10 Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.086   12.8  51.2    1.4e+04  -19.5  35.5    3.4  1  PF10439.4  Bacteriocin class II with double-glycine leader peptide
        2.6    8.0  39.2        2.2    8.2   8.9    3.3  2  PF06897.7  Protein of unknown function (DUF1269)
        4.8    6.7  12.7    1.1e+04   -4.1   8.8    4.2  1  PF09811.4  Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.1  48.1         8   1.4e+04       1      42 [.      10      50 ..       1      87 [] 0.83

  Alignments for each domain:
  == domain 1    score: -12.1 bits;  conditional E-value: 8
  PF13488.1  1 iGaaiGAaaGAaiGaaaggagkGAliGAavGaaaGaliGaym 42
               +Gaa+GAa+G ++Gaa+g  ++GAl+GAavG a+Gal+Ga+ 
  MMETSP0890-20130614|268_1 10 VGAAVGAAVGPLVGAAVGV-AVGALVGAAVGFAVGALVGAAV 50
               5788888888888888875.6888888888888888888764 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.1  48.8         8   1.4e+04       4      44 ..       9      48 ..       1      87 [] 0.74

  Alignments for each domain:
  == domain 1    score: -15.1 bits;  conditional E-value: 8
               XXXXXXXXXXXXXXXXXXXXXX---------------TTHH CS
  PF13441.1  4 vaGAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaaga 44
               + GAa+GAa+G ++Gaa+G    GA++GAa+G ++G+++ga
  MMETSP0890-20130614|268_1  9 LVGAAVGAAVGPLVGAAVG-VAVGALVGAAVGFAVGALVGA 48
               5566666666666777777.666777777777666666665 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9  20.1   0.00014      0.24      56      96 ..       4      43 ..       1      51 [. 0.36
   2 !   19.3  14.6   3.4e-07   0.00058      54      95 ..      22      62 ..      20      65 .. 0.93
   3 !   10.4  20.2    0.0002      0.35      52      96 ..      36      79 ..      34      87 .] 0.48

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
  PF13436.1 56 aavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagag 96
               aavG +vGAa+gaa+g    gaa+G a+G+lvGaa+G   g
  MMETSP0890-20130614|268_1  4 AAVGELVGAAVGAAVGP-LVGAAVGVAVGALVGAAVGFAVG 43
               33333333333333333.33333333333333333333222 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 3.4e-07
  PF13436.1 54 egaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGaga 95
               +gaavG avGA++gaa+g    ga++GAa+G lvG+a+Ga  
  MMETSP0890-20130614|268_1 22 VGAAVGVAVGALVGAAVGF-AVGALVGAAVGPLVGVAVGAAV 62
               79*****************.*******************975 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.0002
  PF13436.1 52 aaegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagag 96
               aa+g avGa+vGAa+g ++g    gaa+G a+G++vG+a+G+  g
  MMETSP0890-20130614|268_1 36 AAVGFAVGALVGAAVGPLVGV-AVGAAVGPAVGAAVGVAVGSAVG 79
               444445555555555544444.44444444444444444444433 PP

>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -17.2  24.9         8   1.4e+04       9      18 ..      38      47 ..       1      87 [] 0.67

  Alignments for each domain:
  == domain 1    score: -17.2 bits;  conditional E-value: 8
  PF10247.4  9 mGfimGaaVG 18
               +Gf++Ga+VG
  MMETSP0890-20130614|268_1 38 VGFAVGALVG 47
               2333333333 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5  25.3   0.00082       1.4       1      42 []      10      47 ..       1      47 [. 0.78
   2 ?   -9.8  37.3         8   1.4e+04       1      41 [.      42      82 ..      21      87 .] 0.66

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00082
  PF05433.10  1 vGaliGAaaGavaGaaigggggrllgavvGAaaGalaGnaig 42
                vGa++GAa+G ++Gaa+    g ++ga+vGAa+G ++G+ +g
   MMETSP0890-20130614|268_1 10 VGAAVGAAVGPLVGAAV----GVAVGALVGAAVGFAVGALVG 47
                46666666666666666....669**************9987 PP

  == domain 2    score: -9.8 bits;  conditional E-value: 8
  PF05433.10  1 vGaliGAaaGavaGaaigggggrllgavvGAaaGalaGnai 41
                vGal+GAa+G ++G a+g+  g ++ga+vG a+G ++G+a+
   MMETSP0890-20130614|268_1 42 VGALVGAAVGPLVGVAVGAAVGPAVGAAVGVAVGSAVGAAV 82
                46666666666666666666666666666666666666665 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -19.5  35.5         8   1.4e+04      28      64 ..      11      47 ..       1      87 [] 0.72

  Alignments for each domain:
  == domain 1    score: -19.5 bits;  conditional E-value: 8
  PF10439.4 28 gigggaaaGalaGaatggavGglaGAlvGavvGaigg 64
               g++ gaa G l+Gaa+g avG+l+GA+vG +vGa+ g
  MMETSP0890-20130614|268_1 11 GAAVGAAVGPLVGAAVGVAVGALVGAAVGFAVGALVG 47
               5555666666666666666666666666666666554 PP

>> PF06897.7  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.9    0.0013       2.2       2      37 ..       5      39 ..       2      42 .. 0.78
   2 ?    0.6  14.7      0.31   5.2e+02       3      41 ..      38      75 ..      36      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0013
  PF06897.7  2 lsGalwGlLvGllflnpllGvavGAaagAlsgslsd 37
               + G+l+G+ vG   + pl+G+avG a+gAl+g+  +
  MMETSP0890-20130614|268_1  5 AVGELVGAAVGAA-VGPLVGAAVGVAVGALVGAAVG 39
               5677777777777.559**************98765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.31
  PF06897.7  3 sGalwGlLvGllflnpllGvavGAaagAlsgslsdvgid 41
                G  +G+LvG  +  pl+GvavGAa+g  +g+  +v++ 
  MMETSP0890-20130614|268_1 38 VGFAVGALVGAAV-GPLVGVAVGAAVGPAVGAAVGVAVG 75
               67789*****995.59***********999998888775 PP

>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   8.8       6.3   1.1e+04      21      29 ..      39      47 ..       1      87 [] 0.79

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6.3
  PF09811.4 21 GfqeGaqlG 29
               Gf+ Ga +G
  MMETSP0890-20130614|268_1 39 GFAVGALVG 47
               344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.49s 00:00:01.12 Elapsed: 00:00:00.71
# Mc/sec: 293.64
//
Query:       MMETSP0890-20130614|263_1  [L=1486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-91  297.4 787.0     0.0003   19.9  16.0   35.7 19  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   7.5   5.2e-08   0.00071       2      36 .]       3      37 ..       2      37 .. 0.94
   2 !   10.8  19.9   1.5e-05       0.2       2      35 ..      51      84 ..      35      85 .. 0.81
   3 ?   -4.3  30.0      0.78   1.1e+04       2      35 ..     107     140 ..      70     141 .. 0.84
   4 !   15.2  15.7   6.4e-07    0.0087       2      35 ..     139     172 ..     138     177 .. 0.92
   5 !   10.1  19.9   2.4e-05      0.33       2      35 ..     179     212 ..     166     213 .. 0.92
   6 ?  -42.3  57.4         1   1.4e+04       2      35 ..     255     288 ..     195     305 .. 0.76
   7 ? -165.7 143.7         1   1.4e+04       2      35 ..     351     384 ..     279     564 .. 0.95
   8 ?  -64.3  71.5         1   1.4e+04      11      35 ..     620     644 ..     546     700 .. 0.81
   9 !   11.7  14.3     8e-06      0.11       2      35 ..     683     716 ..     682     721 .. 0.89
  10 !   14.2  17.6   1.3e-06     0.018       2      35 ..     719     752 ..     718     760 .. 0.84
  11 !   11.0  15.1   1.3e-05      0.18       1      32 [.     754     785 ..     751     789 .. 0.54
  12 !   19.9  16.0   2.2e-08    0.0003       1      35 [.     790     824 ..     790     825 .. 0.98
  13 ?   -0.8  26.6     0.065   8.9e+02       2      35 ..     811     844 ..     811     860 .. 0.76
  14 !    7.8  17.2   0.00013       1.7       2      35 ..     843     876 ..     843     889 .. 0.66
  15 !   11.7  13.3   7.7e-06       0.1       2      35 ..     879     912 ..     875     913 .. 0.87
  16 !   19.1  13.2   3.8e-08   0.00052       2      35 ..     915     948 ..     911     949 .. 0.90
  17 !    9.2  16.2   4.6e-05      0.63       2      26 ..     947     971 ..     935     981 .. 0.49
  18 ?  -22.2  40.9         1   1.4e+04       2      11 ..    1023    1032 ..     966    1065 .. 0.64
  19 !    6.0  13.6   0.00047       6.4       2      35 ..    1055    1088 ..    1055    1089 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.2e-08
  PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36
               pT+ Pt+ PT+ PT+ Pt  PT+ P+  P++ P+a
  MMETSP0890-20130614|263_1  3 PTVIPTSTPTGSPTAFPTECPTSVPSVVPSTLPSA 37
               9999***************************9985 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 1.5e-05
  PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
               pT++Pt +PT+ PT+ Pt+ PT +P++ Pt+aPt
  MMETSP0890-20130614|263_1 51 PTSAPTVDPTGVPTNIPTDIPTTSPSSVPTGAPT 84
               7888888888888888888888888888888887 PP

  == domain 3    score: -4.3 bits;  conditional E-value: 0.78
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT +Pt+ PT+ PTg Pt+ PT++Pt+ Pt+ Pt
  MMETSP0890-20130614|263_1 107 PTGRPTTLPTTSPTGIPTSAPTNAPTEIPTAIPT 140
                7788888888888888888888888888887776 PP

  == domain 4    score: 15.2 bits;  conditional E-value: 6.4e-07
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ Pt+ PT  PTg P+++PT++Pt  Pt+ Pt
  MMETSP0890-20130614|263_1 139 PTVCPTAVPTATPTGLPSSEPTSAPTTTPTEVPT 172
                8999999999999999999999999999999998 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 2.4e-05
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ Pt++PT +PT  Pt+ PT++P++ Pt  Pt
  MMETSP0890-20130614|263_1 179 PTVSPTADPTSAPTVIPTSTPTNKPSSVPTISPT 212
                8999999999999999999999999999999998 PP

  == domain 6    score: -42.3 bits;  conditional E-value: 1
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pTa Pt++PT+ PT  Pta PT++Pta Pt+ Pt
  MMETSP0890-20130614|263_1 255 PTAVPTTDPTTDPTSVPTAFPTAAPTAVPTAFPT 288
                5555555555555555555555555555555554 PP

  == domain 7    score: -165.7 bits;  conditional E-value: 1
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                p+a+Pte PT  PTg Pta PT+ Pt+ Pt+ Pt
  MMETSP0890-20130614|263_1 351 PSANPTETPTKTPTGVPTATPTGVPTSDPTSTPT 384
                7888888888888888888888888888888887 PP

  == domain 8    score: -64.3 bits;  conditional E-value: 1
  PF04886.7  11 TvqPTgqPtaqPTdqPtaqPtdaPt 35 
                +++PTg Pt+ PT+ Pt+ Pt+ Pt
  MMETSP0890-20130614|263_1 620 STAPTGTPTSCPTGTPTSAPTALPT 644
                4444444444444444444444444 PP

  == domain 9    score: 11.7 bits;  conditional E-value: 8e-06
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                p++ Pt+ PT  PT  Pt+ PT+ P+a Pt+aPt
  MMETSP0890-20130614|263_1 683 PSSDPTTIPTKVPTSCPTSAPTAIPSATPTGAPT 716
                8899999999999999999999999999999997 PP

  == domain 10    score: 14.2 bits;  conditional E-value: 1.3e-06
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ P++ PT  PTg+Pta PT  Pt++P+  Pt
  MMETSP0890-20130614|263_1 719 PTNVPSSIPTSSPTGEPTADPTTTPTSSPSMLPT 752
                8888999999999999999999999999888887 PP

  == domain 11    score: 11.0 bits;  conditional E-value: 1.3e-05
  PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32 
                +pT+ Pt  P+  PT +Pt  PT++Pta P++
  MMETSP0890-20130614|263_1 754 EPTSLPTVLPSATPTTAPTTDPTGAPTAIPSS 785
                45555555555555555555555555555555 PP

  == domain 12    score: 19.9 bits;  conditional E-value: 2.2e-08
  PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                +pT  Pt++PT++PT+ Pta PT+ Pta Pt+aPt
  MMETSP0890-20130614|263_1 790 PPTQVPTSDPTTAPTAHPTAVPTSLPTALPTTAPT 824
                8*********************************9 PP

  == domain 13    score: -0.8 bits;  conditional E-value: 0.065
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ Pt+ PT++PT  Pta PT+ Pt  Pt+aPt
  MMETSP0890-20130614|263_1 811 PTSLPTALPTTAPTSCPTAVPTSTPTTDPTSAPT 844
                7777888888888888888888888888888877 PP

  == domain 14    score: 7.8 bits;  conditional E-value: 0.00013
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ Pt+ PT+ PT  Pt+ PT+ Pt  Pt+ Pt
  MMETSP0890-20130614|263_1 843 PTSIPTTVPTGSPTISPTSMPTGVPTGVPTSIPT 876
                6666777777777777777777777777776665 PP

  == domain 15    score: 11.7 bits;  conditional E-value: 7.7e-06
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT+ Pt+ PT+ PT  P++ PT+ Pt  Ptd P+
  MMETSP0890-20130614|263_1 879 PTSMPTSVPTGVPTSIPSSVPTSDPTTVPTDTPI 912
                8999999999999999999999999999999885 PP

  == domain 16    score: 19.1 bits;  conditional E-value: 3.8e-08
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                pT  Pt+ PT+ PT++Pt+ PT+ Pt+ Pt+ P+
  MMETSP0890-20130614|263_1 915 PTTMPTGSPTGVPTNAPTSCPTSVPTSVPTADPS 948
                8999999999999999999999999999999998 PP

  == domain 17    score: 9.2 bits;  conditional E-value: 4.6e-05
  PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqP 26 
                p+a Pt+ PT  PTg P+  PT+ P
  MMETSP0890-20130614|263_1 947 PSATPTSVPTASPTGLPSGVPTSIP 971
                4444555555555555555555555 PP

  == domain 18    score: -22.2 bits;  conditional E-value: 1
  PF04886.7    2 pTaqPteqPT 11  
                 pTa P++ PT
  MMETSP0890-20130614|263_1 1023 PTAVPASTPT 1032
                 3333333444 PP

  == domain 19    score: 6.0 bits;  conditional E-value: 0.00047
  PF04886.7    2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35  
                 pTa P+  P++ PT  Pt+ P+++Pta Pt  Pt
  MMETSP0890-20130614|263_1 1055 PTAIPSQAPSTLPTSLPTSIPSASPTAVPTPVPT 1088
                 6777777777777777777777777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                       95  (0.00694851); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.17u 0.49s 00:00:03.66 Elapsed: 00:00:02.02
# Mc/sec: 1762.86
//
Query:       MMETSP0890-20130614|272_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-47  160.4   0.0      6e-47  160.1   0.0    1.1  1  PF01266.19 FAD dependent oxidoreductase
    8.4e-05   22.4   0.7    0.00018   21.3   0.5    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    0.00021   20.3   0.6     0.0003   19.8   0.4    1.2  1  PF01494.14 FAD binding domain
     0.0011   18.0   0.3     0.0014   17.6   0.2    1.2  1  PF12831.2  FAD dependent oxidoreductase
     0.0027   16.5   1.3     0.0049   15.6   0.4    1.7  2  PF00890.19 FAD binding domain
     0.0065   16.2   0.1      0.016   14.9   0.1    1.7  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0074   16.2   0.7      0.021   14.7   0.5    1.9  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.039   12.9   2.9       0.07   12.0   2.0    1.4  1  PF01946.12 Thi4 family
      0.063   13.5   2.2       0.14   12.4   1.5    1.6  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      0.087   12.4   0.3        1.1    8.9   0.0    2.2  2  PF13454.1  FAD-NAD(P)-binding
       0.28   10.4   3.8       0.66    9.2   2.6    1.6  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
        3.1    6.4   5.6        3.9    6.1   0.0    2.1  2  PF01134.17 Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   0.0   5.3e-50     6e-47       2     356 ..       3     345 ..       2     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 160.1 bits;  conditional E-value: 5.3e-50
                 EEEE----HHHHHHHHHHHTT-EEEEEESSSTTSSCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHH.HHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTT.TEEEE-HHHHHHHSTTBTTTT--EEEETTEEEEEHHHHHHHHHHHHHHG.--EEEESEEEEEEEEETTC...EE.EEEEES..EEE.EEEEE----THHHHHCCGTCCT............TEEEEEEEEEEEE-TCCHSCCCEEEEEEEECGGTSEEEEEET.TEEEE-..EEE.SCEEESCBHHHH.HHHCCTHHHHHHHHHHHHHHSGGG..GGSEEEEEEEEEEEEETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHH CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekgdiasgaSgrngglihagllkerdprllrlalesldllrel.aaetgidvdfrrtgvldlasdeeeleelerlaerarangl.dvellsaeevrerepllspdlkgglfypddgqvdpaklvkalaraaeel.GveiiegtkVtglereggr...vsgvetedgs.ira.dkvvlAaGawsskllkllgldl............pirpvrgqvlvtepltdelaaavilgpvavldargvfvlpre.gevlvg..ttd.grldrgataeessgedvdvdlevdelleaaakllpql..kdaeilrawaGlrpvtpdglpvigevpevpglyvatGhsghGftlapaaGklla 356
                 v+i GgG+vG++tAy+La++g +++++++ +ia++aSgr+gg+++ +  +++++  ++l ++s++l +el  +  g d+++  +  + +  + +  +           + l ++e++s++ ++     +++           +qv+p k+++a+ ++a+ l  v+++++  V+g+   +++   v+ v++ +g+ i+  ++++ A+G+w   l  +  +              p+ +++ ++l ++  +   ++av ++ + +l+      +pr+ gev+v   + + + ++  +++          +    ++++a+ + + +l  +  +i++++a+ +p tpdglp+ig++p++++ +va+G++++G+ lapa++++l+
   MMETSP0890-20130614|272_1   3 VCIAGGGVVGVCTAYYLAKEGKSCIVIDRKGIAGAASGRAGGFLAKT--WNDGSPTADLTHRSYELHAELgRELVGTDYRTLTCAGITVGGSLQKPS----------NQKLkNIEWVSSQHAQSIRNIGNE--------NIIAQVHPKKFCQAIFARAQSLaDVTYRQD-IVKGVLFADDDsrrVKKVVLGSGHeIDNiEAIIFAMGPWNHVLGLKSTA-KqcdihgfelklpPMTGTKYHSLCLQSKKVL-NQAVFFHGRGDLEV-----YPRPdGEVYVTglPEPpTVVNDLPGETAI-------KA---DIIHALTTTFNDLsdSQLPINSKQACHLPSTPDGLPIIGPIPDLSNAFVASGLGCWGILLAPATAQALV 345
                 7999*******************************************..99*******************777779999988999999996666666..........7777899**********9999999........999******************966******.*****998888888********988999***********9885444433.1346666666666666666666666663333.36666666666644.....**********9442222333333444444.......34...*************7677899*********************************************9876 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.5   1.6e-07   0.00018       1      37 [.       5      39 ..       5      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.6e-07
  PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraas 37
               I G+G+ G ++Ay+Lak+gk++ v+++   +G   as
  MMETSP0890-20130614|272_1  5 IAGGGVVGVCTAYYLAKEGKSCIVIDRKGIAGA--AS 39
               77************************9987773..33 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   2.6e-07    0.0003       4      48 ..       3      48 ..       1      51 [. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.6e-07
                EEE--------HHHHHHHHH.HHEEEEESSSCCCH--.----BEHH CS
  PF01494.14  4 VlIVGaGpaGlmlallLseaGvrvvlvekhsttvvlp.rAdglnqr 48
                V+I G+G +G+ +a  L++ G +++++++   +   + rA+g+  +
   MMETSP0890-20130614|272_1  3 VCIAGGGVVGVCTAYYLAKEGKSCIVIDRKGIAGAASgRAGGFLAK 48
                99***************************98765555588887655 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.3e-06    0.0014       2      69 ..       3      69 ..       3     184 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.3e-06
  PF12831.2  2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglvatddgnkdeeqvigglareflerlre 69
               v+++GGg  Gv+ A   a++G++ ++++r+g  G  +++ +++ + ++++ ++ ++ l++  +e  +e
  MMETSP0890-20130614|272_1  3 VCIAGGGVVGVCTAYYLAKEGKSCIVIDRKGIAG-AASGRAGGFLAKTWNDGSPTADLTHRSYELHAE 69
               8************************999988765.666666677777776664444444444433333 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   4.3e-06    0.0049       2      46 ..       3      47 ..       2      80 .. 0.88
   2 ?   -1.3   0.0      0.57   6.5e+02     163     205 ..     142     192 ..     105     210 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.3e-06
                EEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-----B CS
  PF00890.19  2 vvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsqGgid 46
                v + G+G+ G + A+ +a++g++++v++ ++  g a+  ++G ++
   MMETSP0890-20130614|272_1  3 VCIAGGGVVGVCTAYYLAKEGKSCIVIDRKGIAGAASGRAGGFLA 47
                5699****************************9999999999775 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.57
                 EEEE--BG--BB---EEEETTT-SEE........EEEES.EEEE-----GG CS
  PF00890.19 163 radeLivedgrvtGvvvenprsgrev........rirakaavvlatgGfgr 205
                 ++++++++++ v Gv +++++s r          +i +++a++ a+g +++
   MMETSP0890-20130614|272_1 142 SLADVTYRQDIVKGVLFADDDSRRVKkvvlgsghEIDNIEAIIFAMGPWNH 192
                 334444445556666666552222223334444466666667999998887 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.4e-05     0.016       2     126 ..       3     196 ..       2     211 .. 0.70
   2 ?   -2.2   0.0       2.4   2.8e+03      30      54 ..     214     238 ..     197     268 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-05
                EEEE----HHHHHHHHHHHTTSEEEEE...CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH.......................................HHHHHHHHCTCEEEHCHEEEEEETTTTEE.............................EEEEEEEEEEEETEEEEE.EESEEEE----B----TG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvali...ekeggtcvnrgclpkkllvevaegreeleelal.......................................kvvdelekagieilleknvvkidsgskkv.............................vqeagavkadekgkgrdi.kydklviAtGarprtlgi 126
                v+i GgG+ G+ +a +la+ g  +++i   +  g  +   g+ ++k++ + +++++  +++++                                       ++v +  +++i++  ++n++   + +k +                                   vk++  g g++i + ++++ A+G ++++lg+
  MMETSP0890-20130614|272_1   3 VCIAGGGVVGVCTAYYLAKEGKSCIVIdrkGIAGAASGRAGGFLAKTWNDGSPTADLTHRSYElhaelgrelvgtdyrtltcagitvggslqkpsnqklkniEWVSSQHAQSIRNIGNENIIAQVHPKK-FcqaifaraqsladvtyrqdivkgvlfaddD--SRRVKKVVLGSGHEIdNIEAIIFAMGPWNHVLGL 196
                8999***********************554333455668999999999999999988877444799999999999999999999999999998888888888888777778888755555555544444.4477777777777777777766666666431..2223333333333331456666666666665555 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.4
                SSSSSTBTSGGHHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF07992.9  30 keggtcvnrgclpkkllvevaegre 54 
                 ++gt +++ cl +k+ ++ a +++
  MMETSP0890-20130614|272_1 214 PMTGTKYHSLCLQSKKVLNQAVFFH 238
                4678999999999998888776655 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   1.8e-05     0.021       1      37 [.       4      39 ..       4     215 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.8e-05
  PF13738.1  1 lVvGAGaaGlafadnlleegatpliivDrnakpGghw 37
               ++ G+G +G++ a++l +eg +  i++Dr+   G++ 
  MMETSP0890-20130614|272_1  4 CIAGGGVVGVCTAYYLAKEGKS-CIVIDRKGIAGAAS 39
               799*******************.9****995544443 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.0   6.1e-05      0.07      20      58 ..       3      41 ..       1      50 [. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.1e-05
                EEEE-------HHHHHHHTSTS-EEEEESSS-------- CS
  PF01946.12 20 vvivGaGssGltaayylakkdlkvailerklsiGGGawl 58
                v i G+G  G+ +ayylak++   ++++rk   G  ++ 
   MMETSP0890-20130614|272_1  3 VCIAGGGVVGVCTAYYLAKEGKSCIVIDRKGIAGAASGR 41
                789************************999777765543 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.5   0.00012      0.14       2      31 ..       3      32 ..       2      40 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00012
                EEEE---HHHHHHHHHHHHTTSEEEEEESS CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierr 31
                v++ GGG++G+  A +lak gk+  vi+r+
   MMETSP0890-20130614|272_1  3 VCIAGGGVVGVCTAYYLAKEGKSCIVIDRK 32
                6899***********************997 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.25   2.8e+02       2      20 ..       5      23 ..       4      42 .. 0.77
   2 ?    8.9   0.0   0.00096       1.1      71     154 ..     104     188 ..      91     190 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.25
  PF13454.1  2 IiGaGprGlsvlerLlara 20
               I G+G+ G++++  L+++ 
  MMETSP0890-20130614|272_1  5 IAGGGVVGVCTAYYLAKEG 23
               89*************9984 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00096
  PF13454.1  71 leWleaqgaeeaeelepddfppRalygeYlrwvfeelvarlpegvtvrvhraevvdlepegdg....qtvlladgesl.eadaVvlAtG 154
                 eW+ +q+a+ ++++ +++ +   + +++++++f+++++ +    +v++ ++ v  +   +d     + v+l +g+++ ++ a+++A+G
  MMETSP0890-20130614|272_1 104 IEWVSSQHAQSIRNIGNENIIAQVHPKKFCQAIFARAQSLA----DVTYRQDIVKGVLFADDDsrrvKKVVLGSGHEIdNIEAIIFAMG 188
                5899999976699************************9877....46666666655443332222234789999988889999999998 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.6   0.00058      0.66       1      31 [.       1      31 [.       1      36 [. 0.94

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00058
               -EEEEE------------TTT---EEE---S CS
  PF03721.9  1 mkiaviGlGYvGlptavvlaekghevvgvDi 31
               m +++ G G vG  ta  la+ g+  +++D 
  MMETSP0890-20130614|272_1  1 MVVCIAGGGVVGVCTAYYLAKEGKSCIVIDR 31
               679**************************96 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.6      0.23   2.6e+02       2      28 ..       3      29 ..       2      48 .. 0.87
   2 ?    6.1   0.0    0.0035       3.9      87     152 ..     122     191 ..     109     206 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.23
                EEEE-------HHHHHHHH----EEEE CS
  PF01134.17  2 viViGgGhAGceAAlaaarlGakvlLi 28
                v + GgG  G+  A+ +a+ G + + i
   MMETSP0890-20130614|272_1  3 VCIAGGGVVGVCTAYYLAKEGKSCIVI 29
                7899*****************998877 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0035
                 EEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEE--BSS...SBB---EE----B-EES.EEEE-----B CS
  PF01134.17  87 alraqvdrelyskevteklenepnleiieeeveelivee...kkvkgvvtedgetikak.avviatGtfl 152
                 ++ aqv  +++ +++ ++ ++  +++ +++ v+ ++  +   ++vk vv+ +g++i +  a++ a G++ 
   MMETSP0890-20130614|272_1 122 NIIAQVHPKKFCQAIFARAQSLADVTYRQDIVKGVLFADddsRRVKKVVLGSGHEIDNIeAIIFAMGPWN 191
                 566899999**************************998888899**********9998769999****43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.91
# Mc/sec: 1005.94
//
Query:       MMETSP0890-20130614|269_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-63  212.2   0.0    1.4e-62  211.5   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.0     1e-66   1.4e-62       2     305 ..     583     891 ..     582     900 .. 0.87

  Alignments for each domain:
  == domain 1    score: 211.5 bits;  conditional E-value: 1e-66
                 HHHHHHT-TT---E...ESSTT---EEE-TT-......----TTHHHHHHH-------TTT-----..---B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSE.E.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHH CS
  PF00632.20   2 llskellnpklglf...yvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegill..dlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFt.ieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggynansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltA 305
                 l+s++l++p++g+f   ++++ ++ ly  ++++ +     ++  ++k   f+Gkligka++eg+ +  +++ + ++lk++   ++++l+dl+ +d el +slk+l+ ++  +e++  l+ltF+    d+ +++++++el++nG n  Vt++n +e+++l  + ++ + +k++l+ f++ ++++ip+e l l++++elel +cG ++ +d+ ++r+ tey+gg +++++++ ++we+l+++++e+r+++L  vT+++r P+ Gf++l       ++ft   + ++++++P ++TCfn+++Lp Y+ k  l+e L + 
   MMETSP0890-20130614|269_1 583 LVSEQLFDPSYGVFclgQTQDITYKLYDDRSMPLEL---SDVTVRRKRIDFAGKLIGKALLEGHHFapSVHPNIVLLKHMA-CEPISLSDLQLVDYELWSSLKKLEVMS--DEDLATLDLTFSiDRIDDIDGQVKTHELCENGMNRAVTEKNFSEFLRLRFQERTFDAFKENLTIFLRALYSIIPSEVLMLLSARELELALCGVPE-LDLAEWRSATEYRGGLTESHDVVIWFWEVLESWTDEKRAQLLSWVTSTTRAPIRGFKHLAgrdgveRAFTLTSVPRSQAKYPRSHTCFNRIDLPLYTHKAELEEGLDFV 891
                 899***********6663333333444443333332...2344566789***************76224555567889999.8***********************665..555669******5455555699999**********************************************************************.9**********************************************************99999999999999999999*************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.35u 0.28s 00:00:01.63 Elapsed: 00:00:01.61
# Mc/sec: 1348.51
//
Query:       MMETSP0890-20130614|277_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-09   37.9  16.2    1.8e-09   37.6  10.8    1.4  1  PF13517.1  Family description
  ------ inclusion threshold ------
      0.086   12.0   8.3        1.7    8.0   0.5    2.6  2  PF00036.27 EF hand
       0.22   11.1  20.4       0.13   11.8   3.1    2.4  2  PF01839.18 FG-GAP repeat
        0.7    9.8   6.1         10    6.2   0.1    3.0  4  PF13405.1  EF-hand domain
        1.9    7.8  17.8        1.2    8.4   2.0    2.8  3  PF13202.1  EF hand
        5.3    6.8  15.6         10    5.9   2.7    2.8  2  PF00404.13 Dockerin type I repeat


Domain annotation for each model (and alignments):
>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  10.8   7.9e-13   1.8e-09       1      60 [.      23      82 .]      23      82 .] 0.77

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 7.9e-13
  PF13517.1  1 DldgDGdlDlvvagdgglrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDll 60
               D+dgDGd D++ a+ +  ++ ++++dG+  ++ +   ++ +g+ +v + D+dgDGd D+l
  MMETSP0890-20130614|277_1 23 DVDGDGDIDVLSASWNDDTIAWYENDGNQGFTKRAITTDADGADAVFAIDVDGDGDIDVL 82
               9************76665555555555555555666666677779*************96 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.5   0.00075       1.7       9      18 ..      22      31 ..      18      32 .. 0.89
   2 ?    7.4   1.0    0.0012       2.6       9      18 ..      71      80 ..      66      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00075
                HCTTTSSEBE CS
  PF00036.27  9 fDkDgdGkIs 18
                +D+DgdG I+
   MMETSP0890-20130614|277_1 22 IDVDGDGDID 31
                8********9 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0012
                HCTTTSSEBE CS
  PF00036.27  9 fDkDgdGkIs 18
                +D+DgdG I+
   MMETSP0890-20130614|277_1 71 IDVDGDGDID 80
                8********9 PP

>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.1   5.7e-05      0.13       2      29 ..      15      40 ..      14      52 .. 0.76
   2 ?    5.3   5.5    0.0066        15       3      19 ..      65      82 .]      63      82 .] 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.7e-05
                CECEEEE.-TT---S-EEEEETEECTCE.- CS
  PF01839.18  2 gnsvavg.DfnGDGrpDlavGpmggghn.G 29
                g+ +  + D++GDG+ D++      ++n +
   MMETSP0890-20130614|277_1 15 GALAVFAiDVDGDGDIDVLS----ASWNdD 40
                56666778**********99....555534 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0066
                ECEEEE.-TT---S-EEE CS
  PF01839.18  3 nsvavg.DfnGDGrpDla 19
                + +  + D++GDG+ D++
   MMETSP0890-20130614|277_1 65 ADAVFAiDVDGDGDIDVL 82
                5666777*******9996 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.4   7.8e+03      10      16 ..      10      16 ..       7      17 .. 0.65
   2 ?    6.2   0.1    0.0045        10       8      19 ..      21      32 ..      18      34 .. 0.88
   3 ?   -2.6   0.0       2.8   6.4e+03       9      15 ..      58      64 ..      56      65 .. 0.69
   4 ?    5.8   0.4    0.0059        13       8      18 ..      70      80 ..      66      82 .] 0.87

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.4
               ------- CS
  PF13405.1 10 DkdgdGk 16
                +d +G 
  MMETSP0890-20130614|277_1 10 TTDANGA 16
               5778875 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0045
               CC-------B-- CS
  PF13405.1  8 lfDkdgdGkida 19
               ++D dgdG id 
  MMETSP0890-20130614|277_1 21 AIDVDGDGDIDV 32
               58*******995 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.8
               C------ CS
  PF13405.1  9 fDkdgdG 15
               + +d dG
  MMETSP0890-20130614|277_1 58 ITTDADG 64
               5678888 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0059
               CC-------B- CS
  PF13405.1  8 lfDkdgdGkid 18
               ++D dgdG id
  MMETSP0890-20130614|277_1 70 AIDVDGDGDID 80
               58******999 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.0   0.00054       1.2       7      17 ..      21      31 ..      21      32 .. 0.91
   2 ?   -3.4   0.1       2.9   6.5e+03       9      14 ..      61      64 ..      60      64 .. 0.49
   3 ?    8.4   2.0   0.00054       1.2       7      17 ..      70      80 ..      70      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00054
               HH--S----B- CS
  PF13202.1  7 afDlNgDGkIs 17
               a+D++gDG I+
  MMETSP0890-20130614|277_1 21 AIDVDGDGDID 31
               79********9 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.9
               --S--- CS
  PF13202.1  9 DlNgDG 14
               D+  DG
  MMETSP0890-20130614|277_1 61 DA--DG 64
               44..54 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00054
               HH--S----B- CS
  PF13202.1  7 afDlNgDGkIs 17
               a+D++gDG I+
  MMETSP0890-20130614|277_1 70 AIDVDGDGDID 80
               79********9 PP

>> PF00404.13  Dockerin type I repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.7    0.0044        10       1      10 [.      23      32 ..      23      33 .. 0.91
   2 ?    5.9   2.7    0.0044        10       1      10 [.      72      81 ..      72      82 .] 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0044
                -TT-SS--SH CS
  PF00404.13  1 DVNgDGkVna 10
                DV+gDG ++ 
   MMETSP0890-20130614|277_1 23 DVDGDGDIDV 32
                9*******96 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0044
                -TT-SS--SH CS
  PF00404.13  1 DVNgDGkVna 10
                DV+gDG ++ 
   MMETSP0890-20130614|277_1 72 DVDGDGDIDV 81
                9*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.96
# Mc/sec: 204.69
//
Query:       MMETSP0890-20130614|278_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.77
# Mc/sec: 224.07
//
Query:       MMETSP0890-20130614|280_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-18   64.0   1.1    9.6e-09   34.6   0.1    2.1  2  PF13431.1  Tetratricopeptide repeat
    3.7e-17   61.5   2.6    7.1e-09   35.0   0.4    2.0  2  PF13414.1  TPR repeat
    5.5e-14   51.7   5.9      7e-08   32.1   0.3    2.0  2  PF13424.1  Tetratricopeptide repeat
      7e-13   47.4  11.7    1.1e-06   27.8   3.6    3.9  3  PF00515.23 Tetratricopeptide repeat
    2.9e-11   43.6   0.9    4.5e-07   30.2   0.1    1.6  2  PF13432.1  Tetratricopeptide repeat
    3.7e-08   33.2   0.0    0.00042   20.5   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
      3e-07   29.6   4.4    3.1e-05   23.3   0.3    2.9  3  PF13181.1  Tetratricopeptide repeat
    6.8e-07   28.6   6.3    0.00028   20.4   1.1    3.4  3  PF07719.12 Tetratricopeptide repeat
    6.8e-06   25.3   1.1     0.0039   16.7   0.0    3.0  3  PF13176.1  Tetratricopeptide repeat
    1.6e-05   24.5   3.0    0.00025   20.7   0.1    2.8  3  PF13374.1  Tetratricopeptide repeat
    0.00034   19.8   0.6        0.2   10.7   0.0    2.0  2  PF10373.4  Est1 DNA/RNA binding domain
     0.0027   17.7   1.1       0.26   11.2   0.1    2.0  2  PF12583.3  Tripeptidyl peptidase II N terminal
     0.0054   15.0   0.0       0.79    7.9   0.0    2.0  2  PF07340.6  Cytomegalovirus IE1 protein
     0.0062   16.8   0.6       0.24   11.8   0.1    2.4  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   14.6   0.2        1.9    8.8   0.0    2.1  2  PF08075.6  NOPS (NUC059) domain
      0.029   13.2   0.2        2.2    7.0   0.1    1.8  2  PF02259.18 FAT domain
       0.03   14.8   4.8      0.071   13.6   0.1    2.7  2  PF08238.7  Sel1 repeat
      0.035   14.3   0.0        2.6    8.4   0.0    2.1  2  PF01394.15 Clathrin propeller repeat
      0.089   12.8   0.9       0.46   10.5   0.6    1.8  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
       0.13   11.9   4.9       0.39   10.4   0.3    2.9  3  PF07720.7  Tetratricopeptide repeat
       0.24   11.1   3.7        1.2    8.9   0.1    2.5  3  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   1.5e-11   9.6e-09       1      34 []       6      40 ..       6      40 .. 0.93
   2 !   28.8   0.1   1.1e-09   6.9e-07       1      25 [.      41      65 ..      41      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.5e-11
  PF13431.1  1 lyekaleldPnnadaynnLAelll.nnGdleeAeq 34
               +y+ka+e dP+ a+aynnL+ ll+  ++++++Aeq
  MMETSP0890-20130614|280_1  6 MYRKAIEVDPKFANAYNNLGHLLHvVRKKYDQAEQ 40
               7*********************9956899****98 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 1.1e-09
  PF13431.1  1 lyekaleldPnnadaynnLAellln 25
               +y+ka+eldP+++ ayn L+ ll+n
  MMETSP0890-20130614|280_1 41 MYRKAIELDPKYVYAYNSLGHLLQN 65
               7**********************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     3e-09     2e-06      21      47 ..       2      28 ..       1      30 [. 0.94
   2 !   35.0   0.4   1.1e-11   7.1e-09      16      51 ..      32      67 ..      27      69 .] 0.92

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 3e-09
  PF13414.1 21 eAieayekAleldpnnaelyynlAlay 47
               +A+++y+kA+e dp+ a++y+nl++++
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPKFANAYNNLGHLL 28
               8***********************986 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 1.1e-11
  PF13414.1 16 egdydeAieayekAleldpnnaelyynlAlaylklg 51
               +++yd+A+++y+kA+eldp++  +y+ l++++++  
  MMETSP0890-20130614|280_1 32 RKKYDQAEQMYRKAIELDPKYVYAYNSLGHLLQNVR 67
               79*****************************99865 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.3   1.1e-10     7e-08      30      77 ..       2      50 ..       1      51 [. 0.91
   2 !   27.6   0.5   2.7e-09   1.8e-06       2      57 ..      15      64 ..      14      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.1e-10
  PF13424.1 30 kalellrelgddhpdtaralnnlanlyla.lgdydeAleylekAleiae 77
               +a +++r++ + +p  a+a+nnl+ l++  +++yd+A+++++kA+e+++
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPKFANAYNNLGHLLHVvRKKYDQAEQMYRKAIELDP 50
               7889999999999***********999887999*************986 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 2.7e-09
  PF13424.1  2 pdlatilnnlalvlr.rlgdydeAlelyekalellrelgddhpdtaralnnlanlyl 57
               p +a+++nnl+++l+   ++yd+A+++y+ka+el       +p ++ a+n l+ l++
  MMETSP0890-20130614|280_1 15 PKFANAYNNLGHLLHvVRKKYDQAEQMYRKAIEL-------DPKYVYAYNSLGHLLQ 64
               6689999999999999999999999999999988.......5888999999998876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05    0.0092      19      34 .]       2      17 ..       1      17 [. 0.94
   2 !   27.8   3.6   1.7e-09   1.1e-06       1      34 []      18      52 ..      18      52 .. 0.91
   3 ?    4.3   0.1     0.045        30       2      13 ..      54      65 ..      53      68 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.4e-05
                HHHHHHHHHHHHHTTH CS
  PF00515.23 19 eAleyyekALelnPnn 34
                +A++ y+kA+e++P++
   MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPKF 17
                7*************97 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 1.7e-09
                HHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnayl.klgkydeAleyyekALelnPnn 34
                a+a++nlG++++   +kyd+A++ y+kA+el+P++
   MMETSP0890-20130614|280_1 18 ANAYNNLGHLLHvVRKKYDQAEQMYRKAIELDPKY 52
                789*****98873589*****************97 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.045
                HHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylk 13
                +a++ lG+++++
   MMETSP0890-20130614|280_1 54 YAYNSLGHLLQN 65
                79******9986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   6.9e-10   4.5e-07      15      64 ..       2      52 ..       1      53 [. 0.96
   2 !   17.4   0.0   6.9e-06    0.0045       8      38 ..      30      60 ..      27      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 6.9e-10
  PF13432.1 15 eAlaaleaalalaPeaaeallllaeall.rlgrldeAaallraalalaPdd 64
               +A++ +++a++ +P+ a+a+ +l+ +l+  ++++d+A++ +r+a++l+P++
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPKFANAYNNLGHLLHvVRKKYDQAEQMYRKAIELDPKY 52
               79**************************999******************75 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 6.9e-06
  PF13432.1  8 lraGdydeAlaaleaalalaPeaaealllla 38
               + +++yd+A++ +++a++l+P+++ a+  l+
  MMETSP0890-20130614|280_1 30 VVRKKYDQAEQMYRKAIELDPKYVYAYNSLG 60
               56799**********************9998 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   9.1e-05      0.06      19      43 ..       2      26 ..       1      27 [. 0.92
   2 !   20.5   0.0   6.5e-07   0.00042       2      41 ..      19      59 ..      18      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.1e-05
  PF13428.1 19 eAiallrralalaPddaealllLar 43
               +A++++r+a++ +P+ a a+ +L+ 
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPKFANAYNNLGH 26
               7******************999985 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 6.5e-07
  PF13428.1  2 eallalara.llalGdpdeAiallrralalaPddaealllL 41
               +a+  l+++ +  +  +d+A++++r+a++l+P+   a+  L
  MMETSP0890-20130614|280_1 19 NAYNNLGHLlHVVRKKYDQAEQMYRKAIELDPKYVYAYNSL 59
               6788888762467899****************998777655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.01       6.6      19      33 ..       2      16 ..       1      17 [. 0.88
   2 !   23.3   0.3   4.7e-08   3.1e-05       1      33 [.      18      51 ..      18      52 .. 0.92
   3 ?   -0.4   0.0       1.7   1.1e+03       3      11 ..      55      63 ..      53      65 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.01
               HHHHHHH---HHHH. CS
  PF13181.1 19 kAkeylekalelkpr 33
               +A++ ++ka+e +p+
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPK 16
               6999********995 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 4.7e-08
               ---TTT---HHHH.TT-HHHHHHHHH---HHHH. CS
  PF13181.1  1 akayynlGdiYrq.lGdydkAkeylekalelkpr 33
               a+ay+nlG+++    ++yd+A++ ++ka+el+p+
  MMETSP0890-20130614|280_1 18 ANAYNNLGHLLHVvRKKYDQAEQMYRKAIELDPK 51
               689*******8888******************96 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.7
               -TTT---HH CS
  PF13181.1  3 ayynlGdiY 11
               ay+ lG+++
  MMETSP0890-20130614|280_1 55 AYNSLGHLL 63
               677788776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0034       2.2      19      33 ..       2      16 ..       1      17 [. 0.90
   2 !   20.4   1.1   4.4e-07   0.00028       2      34 .]      19      52 ..      18      52 .. 0.75
   3 ?   -0.6   0.0       2.2   1.5e+03       2      12 ..      54      64 ..      53      68 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHH-TT CS
  PF07719.12 19 eAleafekAleldPn 33
                +A++ ++kA+e dP+
   MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDPK 16
                69999*********7 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.4e-07
                HHHHHHHHHHHH.TT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  2 ealynlGlayyk.lgdyeeAleafekAleldPnn 34
                 a++nlG ++   +++y++A++ ++kA+eldP++
   MMETSP0890-20130614|280_1 19 NAYNNLGHLLHVvRKKYDQAEQMYRKAIELDPKY 52
                56777776655515666***************85 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 2.2
                HHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayy 12
                +a++ lG ++ 
   MMETSP0890-20130614|280_1 54 YAYNSLGHLLQ 64
                68999998876 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.025        16      17      33 ..       2      16 ..       1      19 [. 0.79
   2 !   16.7   0.0     6e-06    0.0039       1      32 [.      20      50 ..      20      51 .. 0.89
   3 ?    0.6   0.0      0.85   5.5e+02       1      12 [.      55      66 ..      55      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.025
  PF13176.1 17 kAielyeraLaltkdpl 33
               +A+++y++  a++ dp 
  MMETSP0890-20130614|280_1  2 QAEQMYRK--AIEVDPK 16
               79999999..8888875 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 6e-06
  PF13176.1  1 allnLarl.ysrlgdyekAielyeraLaltkdp 32
               a++nL++l ++ + +y++A+++y++  a++ dp
  MMETSP0890-20130614|280_1 20 AYNNLGHLlHVVRKKYDQAEQMYRK--AIELDP 50
               79******8888*************..776665 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.85
  PF13176.1  1 allnLarlysrl 12
               a++ L++l +++
  MMETSP0890-20130614|280_1 55 AYNSLGHLLQNV 66
               7999**999876 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.8   5.2e+02      20      30 ..       2      12 ..       1      14 [. 0.82
   2 !   20.7   0.1   3.9e-07   0.00025       2      30 ..      18      47 ..      17      48 .. 0.89
   3 ?    2.5   0.0       0.2   1.3e+02       4      16 ..      55      67 ..      53      69 .] 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.8
  PF13374.1 20 eAlaleeeala 30
               +A++++++a +
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIE 12
               79999999876 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3.9e-07
  PF13374.1  2 aaalnnLAlalrar.gryeeAlaleeeala 30
               a a+nnL+ +l+   ++y++A++++++a +
  MMETSP0890-20130614|280_1 18 ANAYNNLGHLLHVVrKKYDQAEQMYRKAIE 47
               89*******777777***********9976 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.2
  PF13374.1  4 alnnLAlalrarg 16
               a+n L+ +l++ +
  MMETSP0890-20130614|280_1 55 AYNSLGHLLQNVR 67
               89******99876 PP

>> PF10373.4  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00031       0.2       1      32 [.       3      34 ..       3      37 .. 0.86
   2 !    8.1   0.1    0.0018       1.2       1      30 [.      38      67 ..      38      69 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00031
  PF10373.4  1 AlrYYllAasllPssGnpyNQlaviatyagde 32
               A++ Y++A+++ P+  n+yN l+ +   ++++
  MMETSP0890-20130614|280_1  3 AEQMYRKAIEVDPKFANAYNNLGHLLHVVRKK 34
               7889*******************997666665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0018
  PF10373.4  1 AlrYYllAasllPssGnpyNQlaviatyag 30
               A++ Y++A++l P++  +yN l+ +   ++
  MMETSP0890-20130614|280_1 38 AEQMYRKAIELDPKYVYAYNSLGHLLQNVR 67
               7889*******************9987766 PP

>> PF12583.3  Tripeptidyl peptidase II N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.017        11      94     113 ..       2      21 ..       1      28 [. 0.88
   2 !   11.2   0.1    0.0004      0.26      86     115 ..      29      58 ..      25      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.017
  PF12583.3  94 nAEkiYkevvkahPkhlqAh 113
                +AE++Y++ ++ +Pk+ +A 
  MMETSP0890-20130614|280_1   2 QAEQMYRKAIEVDPKFANAY 21 
                69**************9996 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.0004
  PF12583.3  86 qiaKldlEnAEkiYkevvkahPkhlqAhLl 115
                ++++   ++AE++Y++ ++ +Pk++ A   
  MMETSP0890-20130614|280_1  29 HVVRKKYDQAEQMYRKAIELDPKYVYAYNS 58 
                78899999*****************99754 PP

>> PF07340.6  Cytomegalovirus IE1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0     0.002       1.3     103     130 ..       4      31 ..       2      40 .. 0.84
   2 !    7.9   0.0    0.0012      0.79      96     130 ..      30      66 ..      27      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.002
  PF07340.6 103 ehmlkkytqteekftaafnnmggclqta 130
                e+m +k  +++ kf+ a+nn+g  l   
  MMETSP0890-20130614|280_1   4 EQMYRKAIEVDPKFANAYNNLGHLLHVV 31 
                6899******************988765 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0012
  PF07340.6  96 ivrqkvk..ehmlkkytqteekftaafnnmggclqta 130
                +vr+k    e+m +k  +++ k+  a+n +g  lq+ 
  MMETSP0890-20130614|280_1  30 VVRKKYDqaEQMYRKAIELDPKYVYAYNSLGHLLQNV 66 
                68887642279************************85 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.19   1.2e+02      18      31 ..       2      15 ..       1      16 [. 0.82
   2 !   11.8   0.1   0.00036      0.24      13      32 ..      32      51 ..      18      52 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.19
               HHHHHHHHHHHH-T CS
  PF13174.1 18 eAlealerlikeyP 31
               +A +++++ i+  P
  MMETSP0890-20130614|280_1  2 QAEQMYRKAIEVDP 15
               79999999998777 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00036
               HHHHHHHHHHHHHHHHH-TT CS
  PF13174.1 13 lgdtdeAlealerlikeyPd 32
                +++d+A +++++ i+  P+
  MMETSP0890-20130614|280_1 32 RKKYDQAEQMYRKAIELDPK 51
               379*************9996 PP

>> PF08075.6  NOPS (NUC059) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.003       1.9      23      39 ..       3      19 ..       1      23 [. 0.88
   2 ?    4.4   0.0     0.067        44      19      37 ..      34      52 ..      30      61 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.003
  PF08075.6 23 kspeyqkeReqgPrFae 39
                +++y+k+ e+ P+Fa+
  MMETSP0890-20130614|280_1  3 AEQMYRKAIEVDPKFAN 19
               5789************7 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.067
  PF08075.6 19 KlvkkspeyqkeReqgPrF 37
               K  + +++y+k+ e  P++
  MMETSP0890-20130614|280_1 34 KYDQAEQMYRKAIELDPKY 52
               5888999**********97 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.012       7.8     276     302 ..       2      28 ..       1      35 [. 0.86
   2 ?    7.0   0.1    0.0034       2.2     271     305 ..      32      66 ..      26      69 .] 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.012
  PF02259.18 276 eilkaystatefdpqwykawhswalan 302
                 +++++y++a+e+dp+ ++a++++++  
   MMETSP0890-20130614|280_1   2 QAEQMYRKAIEVDPKFANAYNNLGHLL 28 
                 579******************998765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0034
  PF02259.18 271 qekkdeilkaystatefdpqwykawhswalanfev 305
                 ++k d+++++y++a+e+dp+   a++s+++  ++v
   MMETSP0890-20130614|280_1  32 RKKYDQAEQMYRKAIELDPKYVYAYNSLGHLLQNV 66 
                 578899*************9999999999887766 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.27   1.7e+02      26      35 ..       2      11 ..       1      12 [. 0.85
   2 ?   13.6   0.1   0.00011     0.071       1      37 [.      18      48 ..      18      50 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.27
  PF08238.7 26 kAleWyekAA 35
               +A++ y+kA 
  MMETSP0890-20130614|280_1  2 QAEQMYRKAI 11
               899*****96 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00011
  PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeq 37
               a A++nLG  +   +    v k +++A++ y+kA e+
  MMETSP0890-20130614|280_1 18 ANAYNNLGHLL---H---VVRKKYDQAEQMYRKAIEL 48
               57999999322...4...37778***********987 PP

>> PF01394.15  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     0.004       2.6       9      34 ..       7      30 ..       7      30 .. 0.93
   2 ?    4.0   0.0       0.1        66       9      27 ..      42      58 ..      42      68 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.004
  PF01394.15  9 fptatmeswlfiiaingttkgqvqlv 34
                +++a+++ ++f +a+n  + g +++v
   MMETSP0890-20130614|280_1  7 YRKAIEVDPKFANAYN--NLGHLLHV 30
                899*************..99999986 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.1
  PF01394.15  9 fptatmeswlfiiaingtt 27
                +++a++  ++++ a+n  +
   MMETSP0890-20130614|280_1 42 YRKAIELDPKYVYAYN--S 58
                899************9..3 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   0.00071      0.46       8      57 ..       3      52 ..       1      59 [. 0.59

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00071
               HHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
  PF12895.2  8 AlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldsss 57
               A+ +++k+++ +pk   +ay  +  l +   ++y++A + +rk  eld++ 
  MMETSP0890-20130614|280_1  3 AEQMYRKAIEVDPKF-ANAYNNLGHLLHVVRKKYDQAEQMYRKaIELDPKY 52
               677777777777742.33333334667777777777777776665555433 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.16     1e+02      16      32 ..       6      21 ..       2      23 .. 0.80
   2 ?   10.4   0.3    0.0006      0.39      15      35 ..      33      51 ..      32      52 .. 0.89
   3 ?    0.1   0.1         1   6.6e+02       1       7 [.      50      56 ..      48      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.16
               -HHHHHHH..HHHHHHH CS
  PF07720.7 16 kyqeArelfsYallail 32
                y +A+e++  ++++++
  MMETSP0890-20130614|280_1  6 MYRKAIEVDP-KFANAY 21
               5899**9988.888887 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0006
               T-HHHHHHH..HHHHHHH-TT CS
  PF07720.7 15 kkyqeArelfsYallaildke 35
               kky++A++   Y+ +  ld++
  MMETSP0890-20130614|280_1 33 KKYDQAEQM--YRKAIELDPK 51
               9********..9998888876 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 1
               HHHHHHH CS
  PF07720.7  1 ldylysl 7 
               ++y y++
  MMETSP0890-20130614|280_1 50 PKYVYAY 56
               5788888 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.1        68      23      34 ..       2      13 ..       1      32 [. 0.80
   2 ?    8.9   0.1    0.0018       1.2      19      34 ..      33      48 ..      25      49 .. 0.93
   3 ?   -1.7   0.0       3.9   2.5e+03      28      38 ..      55      65 ..      52      68 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.1
                HHHHHHHHHHHH CS
  PF04212.13 23 eAlelYkeAlel 34
                +A + Y++A+e+
   MMETSP0890-20130614|280_1  2 QAEQMYRKAIEV 13
                677899999997 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0018
                T-HHHHHHHHHHHHHH CS
  PF04212.13 19 gkyeeAlelYkeAlel 34
                +ky++A + Y++A+el
   MMETSP0890-20130614|280_1 33 KKYDQAEQMYRKAIEL 48
                79************95 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3.9
                HHHHHHHHHHH CS
  PF04212.13 28 YkeAlelLlqa 38
                  ++l++Llq 
   MMETSP0890-20130614|280_1 55 AYNSLGHLLQN 65
                56889999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.81
# Mc/sec: 204.13
//
Query:       MMETSP0890-20130614|265_1  [L=2480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-18   65.9   0.0    7.4e-18   64.6   0.0    1.7  1  PF00665.21 Integrase core domain
    5.4e-11   42.1   0.0    1.3e-10   40.9   0.0    1.7  1  PF00078.22 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
       0.14   11.8   2.5       0.34   10.6   1.8    1.6  1  PF10283.4  Zinc-finger (CX5CX6HX5H) motif


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   1.6e-21   7.4e-18       4     116 ..    2020    2130 ..    2017    2134 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 1.6e-21
                  XXXXEEEEEEE.EET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHHHH CS
  PF00665.21    4 rpgelwqiDvt.pgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnrtl 116 
                   p++++++D++ p+++ + +g++y+++++  fs+f +  a     +a ++a++l  +++ +g   p++llsD+gs+f ++ ++++l+ +++khk+t +++pq+ gk+Er+++ +
   MMETSP0890-20130614|265_1 2020 GPMQVVSVDIVgPFSPVTTNGNRYIFVVMCNFSNFLWMKAAAEI-TAPVTAQILLDIFYVFGF--PLYLLSDRGSNFLAEVVQEMLRLFQVKHKRTSAWHPQTDGKNERIHGPI 2130
                  699*********999999999********************999.999999999978888877..9*********************************************976 PP

>> PF00078.22  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.8e-14   1.3e-10       9     214 .]    1463    1617 ..    1456    1617 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 2.8e-14
  PF00078.22    9 yRp.isllsvddkilqkllakrLeeileplfsepshgfrpgrslhtikalnklkgskwllklDlkkaFdsiphdpllkkltafglpqrfirlikkllstrsravylegekgeiyesrglpqGsvlSPllfnlflhellkflrkafkprllyvrYaDDiligakskeeleeileeveeflkelglelnpeKtkithksdevkflGyvi 214 
                   R+ i     ++  l+kl+           ++   + ++++  +     l  lk++k+l  lD  +++++i + + ++ +++f +p                        +++y+ +++ +G +++P+ +++f++ ++ +l +++     + +Y+DDi  ga + +e  + l++  e+++e+ + l+p+K+ i    +++k+lG +i
   MMETSP0890-20130614|265_1 1463 QRLcI-----NYAPLNKLIEF---------DP---YPLPNQEDC-----LLVLKSQKYLWILDAWSGYWQIALTKRAQEVLSFVSP------------------------RGTYSPNRMMFGPKNAPATYQRFMDTCFAHLIRKK----EVAVYIDDIAGGAPTFDEFLARLRRTLEVCRENSILLKPKKCLIG--FSKIKYLGRQI 1617
                  55544.....55555555555.........44...444555555.....667899999999*************************........................789*****************************976....***************99999999**********************..9*******876 PP

>> PF10283.4  Zinc-finger (CX5CX6HX5H) motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   7.4e-05      0.34       2      12 ..     565     575 ..     564     576 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.4e-05
                B---------- CS
  PF10283.4   2 dCpYGanCYRr 12 
                +C++G++CYRr
  MMETSP0890-20130614|265_1 565 SCRFGPKCYRR 575
                7*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2480 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       941  (0.0688268); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.61u 0.37s 00:00:03.98 Elapsed: 00:00:02.65
# Mc/sec: 2242.63
//
Query:       MMETSP0890-20130614|287_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-36  124.1   0.4    1.2e-23   82.7   0.1    2.0  2  PF13424.1  Tetratricopeptide repeat
    1.8e-30  103.7   0.4    2.5e-13   49.2   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    1.4e-15   56.5   3.8    1.1e-11   44.0   0.4    2.6  2  PF13414.1  TPR repeat
    2.8e-15   54.7   0.2    6.3e-07   28.6   0.0    2.6  3  PF13176.1  Tetratricopeptide repeat
    5.9e-15   54.0   3.9    3.3e-07   29.5   0.1    3.0  3  PF00515.23 Tetratricopeptide repeat
    3.4e-12   45.1   2.7    3.3e-05   23.3   0.0    2.7  3  PF07719.12 Tetratricopeptide repeat
    6.2e-10   39.3   0.0    8.2e-10   38.9   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
    3.9e-08   33.1   0.1      0.013   16.0   0.1    2.2  2  PF13428.1  Tetratricopeptide repeat
    3.1e-07   29.5   3.0      0.002   17.6   0.1    2.5  3  PF13181.1  Tetratricopeptide repeat
    5.2e-07   29.2   5.6      0.025   14.6   0.1    3.8  3  PF13431.1  Tetratricopeptide repeat
    4.2e-06   26.5   0.0      0.088   13.1   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
    9.3e-05   22.0   0.1       0.12   12.0   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
    0.00011   22.3   0.3       0.48   10.8   0.0    2.3  2  PF13174.1  Tetratricopeptide repeat
    0.00017   21.5   0.0     0.0018   18.2   0.0    1.7  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00072   19.4   0.1       0.19   11.6   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat
     0.0031   17.2   0.9       0.39   10.5   0.0    2.5  2  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.062   13.0   0.1        2.8    7.7   0.0    2.0  2  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   6.1e-15   4.9e-12      29      77 ..       1      50 [.       1      51 [. 0.96
   2 !   82.7   0.1   1.5e-26   1.2e-23       8      77 ..      22      92 ..      22      93 .. 0.98

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 6.1e-15
  PF13424.1 29 ekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               e+a+e+  +++g++hp++a  lnnla l++++g+ydeA++++e+ l+i e
  MMETSP0890-20130614|287_1  1 ERAIEIdEKTYGPNHPNVAGDLNNLAALLVEQGKYDEAKPLYERTLKIGE 50
               79*********************************************976 PP

  == domain 2    score: 82.7 bits;  conditional E-value: 1.5e-26
  PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               lnnla +l ++g+ydeA  lye+ l++  ++lg++hpd+a++lnnla l++ +g+ydeA +++e+A+ei e
  MMETSP0890-20130614|287_1 22 LNNLAALLVEQGKYDEAKPLYERTLKIgEKTLGPNHPDVATSLNNLAGLLQDQGKYDEAMPLYERAIEIGE 92
               79******************************************************************976 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0011      0.92      26      42 .]       1      17 [.       1      17 [. 0.93
   2 !   49.2   0.0   3.2e-16   2.5e-13       5      42 .]      22      59 ..      18      59 .. 0.95
   3 !   42.5   0.0   4.2e-14   3.4e-11       1      37 [.      60      96 .]      60      96 .] 0.98

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0011
  PF13374.1 26 eealairrrllGddHPd 42
               e+a +i ++ +G++HP+
  MMETSP0890-20130614|287_1  1 ERAIEIDEKTYGPNHPN 17
               7899************5 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 3.2e-16
  PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               lnnLA +l ++g+y+eA +l+e++l i ++ lG++HPd
  MMETSP0890-20130614|287_1 22 LNNLAALLVEQGKYDEAKPLYERTLKIGEKTLGPNHPD 59
               9************************************8 PP

  == domain 3    score: 42.5 bits;  conditional E-value: 4.2e-14
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllG 37
               +a++lnnLA +l+++g+y+eA +l+e+a +i ++ lG
  MMETSP0890-20130614|287_1 60 VATSLNNLAGLLQDQGKYDEAMPLYERAIEIGEKTLG 96
               79********************************998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   6.8e-07   0.00055      28      67 ..       2      48 ..       1      49 [. 0.70
   2 !   44.0   0.4   1.4e-14   1.1e-11       3      67 ..      19      90 ..      17      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 6.8e-07
  PF13414.1 28 kAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               +A+e+d     pn+++    ++nlA+++ ++g +y+eA   ye+ l++
  MMETSP0890-20130614|287_1  2 RAIEIDektygPNHPNvagDLNNLAALLVEQG-KYDEAKPLYERTLKI 48
               67777666666777776556788888888888.588888888877765 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 1.4e-14
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               A  l++l+  l ++g+ydeA  +ye+ l++      pn+++    ++nlA +++ +g +y+eA+  ye+A+e+
  MMETSP0890-20130614|287_1 19 AGDLNNLAALLVEQGKYDEAKPLYERTLKIGektlgPNHPDvatSLNNLAGLLQDQG-KYDEAMPLYERAIEI 90
               6679*************************844444488877777*************.6************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.3   2.6e+03      16      24 ..       1       9 [.       1      15 [. 0.66
   2 !   23.5   0.0   3.4e-08   2.7e-05       2      30 ..      22      50 ..      22      56 .. 0.86
   3 !   28.6   0.0   7.9e-10   6.3e-07       1      28 [.      63      90 ..      63      96 .] 0.88

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 3.3
  PF13176.1 16 ekAielyer 24
               e+Aie+ e+
  MMETSP0890-20130614|287_1  1 ERAIEIDEK 9 
               567766554 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 3.4e-08
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltk 30
               l+nLa l +++g+y++A  lyer L++ +
  MMETSP0890-20130614|287_1 22 LNNLAALLVEQGKYDEAKPLYERTLKIGE 50
               89*********************776654 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 7.9e-10
  PF13176.1  1 allnLarlysrlgdyekAielyeraLal 28
               +l+nLa l +++g+y++A  lyera+++
  MMETSP0890-20130614|287_1 63 SLNNLAGLLQDQGKYDEAMPLYERAIEI 90
               79**********************7765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.39   3.1e+02      25      32 ..       1       8 [.       1       9 [. 0.86
   2 !   23.6   0.1     3e-08   2.4e-05       4      30 ..      22      48 ..      21      51 .. 0.95
   3 !   29.5   0.1   4.1e-10   3.3e-07       2      30 ..      62      90 ..      61      93 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.39
                HHHHHHHT CS
  PF00515.23 25 ekALelnP 32
                e+A+e+++
   MMETSP0890-20130614|287_1  1 ERAIEIDE 8 
                79****97 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 3e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+nl++++ ++gkydeA   ye+ L++
   MMETSP0890-20130614|287_1 22 LNNLAALLVEQGKYDEAKPLYERTLKI 48
                79***********************98 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 4.1e-10
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                 +l+nl+ +++ +gkydeA   ye+A+e+
   MMETSP0890-20130614|287_1 62 TSLNNLAGLLQDQGKYDEAMPLYERAIEI 90
                679*************************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         3   2.4e+03      25      32 ..       1       8 [.       1       9 [. 0.82
   2 !   21.4   0.1   1.7e-07   0.00014       4      30 ..      22      48 ..      19      51 .. 0.93
   3 !   23.3   0.0   4.1e-08   3.3e-05       2      30 ..      62      90 ..      61      93 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 3
                HHHHHH-T CS
  PF07719.12 25 ekAleldP 32
                e+A+e+d 
   MMETSP0890-20130614|287_1  1 ERAIEIDE 8 
                79999996 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.7e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                l+nl+ ++ ++g+y+eA+ ++e+ l++
   MMETSP0890-20130614|287_1 22 LNNLAALLVEQGKYDEAKPLYERTLKI 48
                89*********************9997 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 4.1e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  l+nl+ ++  +g+y+eA  ++e+A+e+
   MMETSP0890-20130614|287_1 62 TSLNNLAGLLQDQGKYDEAMPLYERAIEI 90
                5799***********************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0     1e-12   8.2e-10       2      60 ..      24      90 ..      23      94 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1e-12
  PF13432.1  2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                lA +l+++G+ydeA +++e+ l+          P+ a  l +la +l ++g++deA  l+++a+++
  MMETSP0890-20130614|287_1 24 NLAALLVEQGKYDEAKPLYERTLKIGektlgpnhPDVATSLNNLAGLLQDQGKYDEAMPLYERAIEI 90
               589************************************************************9865 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-05     0.018       5      37 ..      23      60 ..      19      64 .. 0.79
   2 !   16.0   0.1   1.6e-05     0.013       5      32 ..      65      92 ..      61      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.2e-05
  PF13428.1  5 lalarallalGdpdeAiallrrala.....laPddaea 37
                 la++l ++G +deA  l++r l+     l+P+++++
  MMETSP0890-20130614|287_1 23 NNLAALLVEQGKYDEAKPLYERTLKigektLGPNHPDV 60
               579*********************95555555666665 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.6e-05
  PF13428.1  5 lalarallalGdpdeAiallrralalaP 32
                 la +l ++G +deA+ l++ra++ + 
  MMETSP0890-20130614|287_1 65 NNLAGLLQDQGKYDEAMPLYERAIEIGE 92
               57999*******************9775 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.1   4.1e+03      25      32 ..       1       8 [.       1      11 [. 0.73
   2 !   12.1   0.1   0.00014      0.11       4      30 ..      22      48 ..      19      51 .. 0.92
   3 !   17.6   0.1   2.5e-06     0.002       3      30 ..      63      90 ..      61      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.1
               H---HHHH CS
  PF13181.1 25 ekalelkp 32
               e+a+e++ 
  MMETSP0890-20130614|287_1  1 ERAIEIDE 8 
               67999987 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00014
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++ + G+yd+Ak  +e+ l++
  MMETSP0890-20130614|287_1 22 LNNLAALLVEQGKYDEAKPLYERTLKI 48
               68999999**************99987 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 2.5e-06
               -TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
               +++nl+ ++ + G+yd+A+  +e+a+e+
  MMETSP0890-20130614|287_1 63 SLNNLAGLLQDQGKYDEAMPLYERAIEI 90
               6899**********************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   0.00011     0.092      10      33 ..      16      39 ..       1      40 [. 0.72
   2 !   14.6   0.1     3e-05     0.025       9      32 ..      57      80 ..      41      81 .. 0.92
   3 ?    2.3   0.0      0.28   2.2e+02       1       8 [.      83      90 ..      83      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
  PF13431.1 10 PnnadaynnLAelllnnGdleeAe 33
               Pn a  +nnLA ll ++G+++eA+
  MMETSP0890-20130614|287_1 16 PNVAGDLNNLAALLVEQGKYDEAK 39
               44466678**************97 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3e-05
  PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
               +P+ a ++nnLA ll+++G+++eA
  MMETSP0890-20130614|287_1 57 HPDVATSLNNLAGLLQDQGKYDEA 80
               78889*****************99 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.28
  PF13431.1  1 lyekalel 8 
               lye+a+e+
  MMETSP0890-20130614|287_1 83 LYERAIEI 90
               7*****97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00011     0.088       6      26 .]      24      44 ..      22      44 .. 0.92
   2 !   11.6   0.0   0.00033      0.27       4      26 .]      64      86 ..      61      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00011
               --HHHHHH-------HHHHHT CS
  PF07721.9  6 aLArallalGdldeAraller 26
               +LA +l ++G +deA  l er
  MMETSP0890-20130614|287_1 24 NLAALLVEQGKYDEAKPLYER 44
               8**************999987 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00033
               H---HHHHHH-------HHHHHT CS
  PF07721.9  4 llaLArallalGdldeAraller 26
               l +LA +l+++G +deA  l er
  MMETSP0890-20130614|287_1 64 LNNLAGLLQDQGKYDEAMPLYER 86
               569**************999887 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0024       1.9       7      27 ..      25      43 ..      21      51 .. 0.81
   2 !   12.0   0.0   0.00015      0.12       8      27 ..      68      85 ..      64      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0024
               HHHHHHHTT-HHHHHHH..HH CS
  PF07720.7  7 lAaefynkkkyqeArelfsYa 27
               lAa +  ++ky+eA  l  Y+
  MMETSP0890-20130614|287_1 25 LAALLVEQGKYDEAKPL--YE 43
               7899999*******888..65 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00015
               HHHHHHTT-HHHHHHH..HH CS
  PF07720.7  8 AaefynkkkyqeArelfsYa 27
               A  +++++ky+eA  l  Y+
  MMETSP0890-20130614|287_1 68 AGLLQDQGKYDEAMPL--YE 85
               6679*********999..65 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0015       1.2       5      28 ..      24      47 ..      24      48 .. 0.88
   2 !   10.8   0.0    0.0006      0.48       6      28 ..      68      89 ..      66      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0015
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la ++ ++g++deA+ ++er +k
  MMETSP0890-20130614|287_1 24 NLAALLVEQGKYDEAKPLYERTLK 47
               578899999***********9765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0006
               HHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerlik 28
               ++l+++ +g++deA+ ++er i+
  MMETSP0890-20130614|287_1 68 AGLLQD-QGKYDEAMPLYERAIE 89
               456666.55***********997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.3e-06    0.0018       1      56 [.      31      93 ..      31      96 .] 0.79

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.3e-06
               HTT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHC CS
  PF12895.2  1 eqhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk.leldss 56
               eq+ y++A  l+e+ l+   k      p  +++l +lA  l+ +g+y++A+ l+++  e+ ++
  MMETSP0890-20130614|287_1 31 EQGKYDEAKPLYERTLKIGEKtlgpnHPdVATSLNNLAGLLQDQGKYDEAMPLYERaIEIGEK 93
               6899999*********999888887422355577779**************999877555554 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0092       7.4      14      31 ..      32      49 ..      22      67 .. 0.84
   2 !   11.6   0.0   0.00023      0.19       6      31 ..      66      91 ..      61      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0092
  PF12688.2 14 tGeeakAvplYrrAlaaG 31
                G+ ++A plY+r l+ G
  MMETSP0890-20130614|287_1 32 QGKYDEAKPLYERTLKIG 49
               6999**********9987 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00023
  PF12688.2  6 eragarDstGeeakAvplYrrAlaaG 31
               + ag     G+ ++A+plY+rA++ G
  MMETSP0890-20130614|287_1 66 NLAGLLQDQGKYDEAMPLYERAIEIG 91
               568999999*************9987 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.018        15      17      33 ..      31      47 ..       1      53 [. 0.78
   2 !   10.5   0.0   0.00049      0.39      17      34 ..      73      90 ..      61      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.018
                HTT-HHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAle 33
                e+gky+eA  lY+  l+
   MMETSP0890-20130614|287_1 31 EQGKYDEAKPLYERTLK 47
                578*********98765 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00049
                HTT-HHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlel 34
                ++gky+eA  lY+ A+e+
   MMETSP0890-20130614|287_1 73 DQGKYDEAMPLYERAIEI 90
                589*************97 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0035       2.8      26      66 ..      16      61 ..      12      67 .. 0.84
   2 ?    4.6   0.0     0.033        27      26      58 ..      58      90 ..      57      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0035
  PF13371.1 26 PddpyerRDrGlllaqlgclaaAaedLeafl.....elcpdapdae 66
               P+ + ++   + ll+++g + +A   +e+ l      l p++pd++
  MMETSP0890-20130614|287_1 16 PNVAGDLNNLAALLVEQGKYDEAKPLYERTLkigekTLGPNHPDVA 61
               66677788899********************777777777888875 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.033
  PF13371.1 26 PddpyerRDrGlllaqlgclaaAaedLeaflel 58
               Pd +  +   + ll+ +g + +A+  +e+++e 
  MMETSP0890-20130614|287_1 58 PDVATSLNNLAGLLQDQGKYDEAMPLYERAIEI 90
               55555666778999**********999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:01.15
# Mc/sec: 198.32
//
Query:       MMETSP0890-20130614|292_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   17.6   0.0     0.0049   16.5   0.0    1.6  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-07    0.0049       1      23 [.      72      97 .]      72      97 .] 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.6e-07
  PF08373.5  1 ieidGpthFyrns.gvll..gktklK 23
               ie+dGp+h+++ + ++++  g tk+K
  MMETSP0890-20130614|292_1 72 IEVDGPSHYLKCNrRRPTenGRTKFK 97
               9********88887888888999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 363.20
//
Query:       MMETSP0890-20130614|296_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.9   0.0        1.5    8.4   0.0    2.0  1  PF09077.6 Mu B transposition protein, C terminal
       0.21   10.9   0.9        1.1    8.7   0.6    2.1  2  PF13713.1 Transcription factor BRX N-terminal domain


Domain annotation for each model (and alignments):
>> PF09077.6  Mu B transposition protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00021       1.5      38      65 ..      59      86 ..      52      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00021
  PF09077.6 38 IsekpGaLRlLtktLrlAamtAkgeeea 65
               I ++ G LR+L++ L+ ++   +g+   
  MMETSP0890-20130614|296_1 59 IERQSGDLRVLAEQLKSSSEKQSGDLRV 86
               66779**********9998877776655 PP

>> PF13713.1  Transcription factor BRX N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.41   2.8e+03      22      33 ..      56      67 ..      55      70 .. 0.75
   2 ?    8.7   0.6   0.00016       1.1      16      33 ..      68      85 ..      66      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.41
  PF13713.1 22 KdMaeKLsgayr 33
               + + e+ sg+ r
  MMETSP0890-20130614|296_1 56 RGVIERQSGDLR 67
               556699999876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00016
  PF13713.1 16 sLTaQLKdMaeKLsgayr 33
               +L++QLK  +eK sg+ r
  MMETSP0890-20130614|296_1 68 VLAEQLKSSSEKQSGDLR 85
               79*************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 369.27
//
Query:       MMETSP0890-20130614|288_1  [L=894]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-17   61.7   1.7    2.2e-08   34.0   0.1    2.8  2  PF13499.1  EF-hand domain pair
    3.8e-13   47.5   1.4     0.0017   17.3   0.1    4.0  4  PF00036.27 EF hand
    1.7e-10   39.7   2.3      0.075   12.8   0.0    4.8  4  PF13405.1  EF-hand domain
    3.2e-09   36.3   0.0    6.3e-09   35.4   0.0    1.5  1  PF00168.25 C2 domain
    6.3e-06   25.1   0.9     0.0076   15.4   0.0    3.7  3  PF13202.1  EF hand
    5.3e-05   23.1   0.1       0.33   10.8   0.0    3.0  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
    0.00027   20.3   2.4        1.8    8.1   0.1    4.0  4  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.067   12.6   0.0       0.13   11.6   0.0    1.4  1  PF07006.6  Protein of unknown function (DUF1310)


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   3.7e-09   6.3e-06       5      65 ..     304     365 ..     291     366 .. 0.86
   2 !   34.0   0.1   1.3e-11   2.2e-08       3      65 ..     620     697 ..     612     698 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.7e-09
  PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgsels..deevrevldyifkelDkngdGvlsfeEflqa 65 
                +F ++D+d++g+l++ee++++++ l    +  d+ +++ +d +f+++ k  +  ls+++f+++
  MMETSP0890-20130614|288_1 304 VFIRIDTDKNGTLSREEITKAIDELIKRGKciDKPKQKDIDTLFRKYAKT-NSELSLNDFVNL 365
                4**********************9886555**99999999999******9.9********986 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 1.3e-11
  PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels................deevrevldyifkelDkngdGvlsfeEflqa 65 
                + +F++lDkd++ +++ +eL+++  +++                     + ++e + +i++++Dk+gd  ls++Ef ++
  MMETSP0890-20130614|288_1 620 RNVFSRLDKDNSHSVSHDELVNFVLAALPR-AtatlrnkcqatrdtpdIDAIKEYISKIIDTFDKDGDSELSYTEFFAF 697
                668**********************99944.35*********999999999999**********************987 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-05     0.033       5      26 ..     304     325 ..     302     328 .. 0.87
   2 ?   -3.3   0.0       4.1     7e+03      17      27 ..     357     367 ..     354     368 .. 0.82
   3 !   13.3   0.0   1.9e-05     0.033       2      25 ..     619     642 ..     618     645 .. 0.92
   4 !   17.3   0.1     1e-06    0.0017       2      28 ..     674     700 ..     673     701 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
                 HHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfkeal 26 
                 +F  +D+D++G++s eE  +a+
   MMETSP0890-20130614|288_1 304 VFIRIDTDKNGTLSREEITKAI 325
                 58899************98876 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4.1
                 BEHHHHHHHHH CS
  PF00036.27  17 IsfeEfkealk 27 
                 +s+++f+++l+
   MMETSP0890-20130614|288_1 357 LSLNDFVNLLM 367
                 7999***9986 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkea 25 
                 ++++F+ +DkD++  +s +E++++
   MMETSP0890-20130614|288_1 619 VRNVFSRLDKDNSHSVSHDELVNF 642
                 789******************987 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 1e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 + ++++ fDkDgd  +s+ Ef +++++
   MMETSP0890-20130614|288_1 674 ISKIIDTFDKDGDSELSYTEFFAFVTS 700
                 5689*****************999876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.4e-05     0.075       5      27 ..     304     326 ..     303     331 .. 0.90
   2 ?    3.7   0.0     0.037        63       2      27 ..     343     367 ..     342     374 .. 0.87
   3 !   10.7   0.0   0.00021      0.36       3      25 ..     620     642 ..     618     647 .. 0.89
   4 !    8.2   0.1    0.0013       2.2       7      27 ..     679     699 ..     673     702 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.4e-05
                --GCC-------B---HHHHHHH CS
  PF13405.1   5 aFklfDkdgdGkidaeELrdaLr 27 
                +F  +D+d++G++++eE+ +a+ 
  MMETSP0890-20130614|288_1 304 VFIRIDTDKNGTLSREEITKAID 326
                68899*************99975 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.037
                HH---GCC-------B---HHHHHHH CS
  PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                +  +F+++ k+ + ++++++++++L 
  MMETSP0890-20130614|288_1 343 IDTLFRKYAKT-NSELSLNDFVNLLM 367
                6779*******.889******99886 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00021
                H---GCC-------B---HHHHH CS
  PF13405.1   3 reaFklfDkdgdGkidaeELrda 25 
                r +F  +Dkd++  ++ +EL+++
  MMETSP0890-20130614|288_1 620 RNVFSRLDKDNSHSVSHDELVNF 642
                889*****************885 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0013
                GCC-------B---HHHHHHH CS
  PF13405.1   7 klfDkdgdGkidaeELrdaLr 27 
                + fDkdgd +++  E+ ++ +
  MMETSP0890-20130614|288_1 679 DTFDKDGDSELSYTEFFAFVT 699
                67**************88766 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.7e-12   6.3e-09       1      84 [.      56     143 ..      56     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.7e-12
                 EEEEEEEESS--S-S...TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEE......EEEEEEESCGGGTEEEEEEEECHSSSCSEE---E CS
  PF00168.25   1 LkvkvieAknLpnkd...kngtsdpyvkvslggakskkkrTrvikntlnPvWn......ekftfevvaeelaeleleVkdedrfgkddflGea 84 
                 Lkvkv+eA nLp      ++ t +pyv + ++g      r  +++++lnP W       ++++f+ v+ + a+l++eV de  +  dd lG +
   MMETSP0890-20130614|288_1  56 LKVKVLEAVNLPGVVmskGSATANPYVAMRMEG---RAWRNATKRHNLNPSWLddngdvDHVYFY-VHRHDAKLTVEVCDEGEHH-DDRLGFV 143
                 89**********987665566************...668*************88899999*****.8888999***********8.9999966 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.5e-06    0.0076       4      21 ..     304     321 ..     300     325 .. 0.86
   2 ?    3.7   0.0     0.023        39       4      24 ..     622     642 ..     619     643 .. 0.85
   3 ?    2.0   0.1     0.075   1.3e+02       6      23 ..     679     696 ..     674     698 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.5e-06
                HHHHH--S----B-HHHH CS
  PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                +F ++D+++ G++sreE 
  MMETSP0890-20130614|288_1 304 VFIRIDTDKNGTLSREEI 321
                7999*************7 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.023
                HHHHH--S----B-HHHHHHH CS
  PF13202.1   4 tFrafDlNgDGkIsreELkrl 24 
                +F+++D++++  +s++EL ++
  MMETSP0890-20130614|288_1 622 VFSRLDKDNSHSVSHDELVNF 642
                7*********99999999876 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.075
                HHH--S----B-HHHHHH CS
  PF13202.1   6 rafDlNgDGkIsreELkr 23 
                + fD++gD  +s  E+ +
  MMETSP0890-20130614|288_1 679 DTFDKDGDSELSYTEFFA 696
                669*****7777777755 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00019      0.33      52      92 ..     297     337 ..     287     345 .. 0.88
   2 !    8.6   0.0   0.00096       1.6      53     103 ..     616     664 ..     608     675 .. 0.86
   3 ?   -1.5   0.0       1.3   2.3e+03      90     110 ..     674     694 ..     665     696 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
  PF10591.4  52 ckeaveWkFnqlDtnkdkvlsksElaplraplvklehCike 92 
                +k  +   F ++Dt+k++ ls++E+++   +l+k  +Ci++
  MMETSP0890-20130614|288_1 297 IKRIAALVFIRIDTDKNGTLSREEITKAIDELIKRGKCIDK 337
                566777889*****************************975 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00096
  PF10591.4  53 keaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdk 103
                ++ v+  F++lD+++ +++s+ El ++      l + ++++ ++C a++d+
  MMETSP0890-20130614|288_1 616 DSVVRNVFSRLDKDNSHSVSHDELVNFVLA--ALPRATATLRNKCQATRDT 664
                6678888*****************988766..9999999999999999986 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.3
  PF10591.4  90 ikeffksCDadkdkkisleEW 110
                i++ +++ D d d+++s  E+
  MMETSP0890-20130614|288_1 674 ISKIIDTFDKDGDSELSYTEF 694
                667888899999999999998 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0084        14      33      47 ..     307     321 ..     303     328 .. 0.86
   2 ?    3.2   0.0     0.035        59       1      33 [.     312     349 ..     312     366 .. 0.73
   3 ?    3.9   0.0     0.021        37      25      51 ..     617     643 ..     612     645 .. 0.90
   4 !    8.1   0.1     0.001       1.8      29      52 ..     676     699 ..     671     701 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0084
  PF13833.1  33 efDtdgdGkisfeEF 47 
                 +Dtd++G +s eE 
  MMETSP0890-20130614|288_1 307 RIDTDKNGTLSREEI 321
                68***********96 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.035
  PF13833.1   1 ekGlItreeLkral.allglkg....lseeevdilfre 33 
                ++G ++ree  +a+  l++ +     ++ +++d+lfr+
  MMETSP0890-20130614|288_1 312 KNGTLSREEITKAIdELIKRGKcidkPKQKDIDTLFRK 349
                58999*********55554444999666666*****97 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.021
  PF13833.1  25 eevdilfrefDtdgdGkisfeEFcvll 51 
                + v+ +f+ +D d++  +s +E ++++
  MMETSP0890-20130614|288_1 617 SVVRNVFSRLDKDNSHSVSHDELVNFV 643
                67999*****************99876 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.001
  PF13833.1  29 ilfrefDtdgdGkisfeEFcvlle 52 
                 +++ fD dgd  +s+ EF ++++
  MMETSP0890-20130614|288_1 676 KIIDTFDKDGDSELSYTEFFAFVT 699
                589*****************9876 PP

>> PF07006.6  Protein of unknown function (DUF1310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.6e-05      0.13      50      81 ..     565     596 ..     524     601 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.6e-05
  PF07006.6  50 kkldskAlteegviksYkideesikkNpMGGi 81 
                k+ld++ l ++g  ++ ki+++si  Np+GG 
  MMETSP0890-20130614|288_1 565 KNLDKDILIDDGRPQQPKIQKSSITTNPLGGA 596
                899****************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.30u 0.40s 00:00:01.70 Elapsed: 00:00:01.19
# Mc/sec: 1800.29
//
Query:       MMETSP0890-20130614|291_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-08   33.8   0.0    3.5e-08   33.1   0.0    1.4  1  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.6e-12   3.5e-08      10     111 ..     137     277 ..     128     279 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 2.6e-12
                 EEEEE.CETSSEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTT..TSTSTS--TTSSSHHC.....................................GTTSHHHHHHHHHHHHHHHHHHHHSCHHHH..SHHHHHHHH CS
  PF00787.19  10 eretkgskkhsyylievelktgakewtvkRrYsdFeeLhskLlrkfp..rlklPplPkkvlfgsv.....................................rkkdeefiekrrkgLeeyLqrllnhpelrk..sevltsFLe 111
                 ++++  s+++ ++ i+v+ +t   ++ ++R+  dF+ Lh kL+r+ p  ++ lPplP     ++                                      r+  ++ ++   ++L +yL +++     r+  ++ +++FL+
   MMETSP0890-20130614|291_1 137 DVRRNDSSSGEFFDISVKFSTT--RFVLSRSLDDFYALHAKLKRRVPacGRSLPPLPTTAEAKKAapiivssnpktekvnkkdessiftvffgnkdesdesiRNAANKSAAVATRKLRAYLAQVIDWFRARRvyDPDVLEFLD 277
                 55555689999*********96..************************************88866************************************988888888888899*********999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.61
# Mc/sec: 1661.74
//
Query:       MMETSP0890-20130614|297_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-58  196.7   0.0    3.9e-57  193.7   0.0    1.9  1  PF06087.7 Tyrosyl-DNA phosphodiesterase
     0.0042   16.7   0.1       0.16   11.6   0.0    2.5  2  PF13091.1 PLD-like domain


Domain annotation for each model (and alignments):
>> PF06087.7  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.0   5.7e-61   3.9e-57      17     443 .]      86     497 ..      70     497 .. 0.83

  Alignments for each domain:
  == domain 1    score: 193.7 bits;  conditional E-value: 5.7e-61
                -----EE-HHHH---..TTEEEEEEE-S-EEHHHHHTTS-.TT--EEEEE-----EE---CCC--HHHH.HHTTEEE------.TT......--B---EEEEEE----EEEEEESS-BSHHHHHSSB-EEEE---B...B--------...HHHHHHHHHHHTT--HH.HHHT.............HHHHHTSB-GGGT-B---B---TTS.....----HHHHHHHHHT----.----SEEEEEEE-SB----S-SSS...---HHHHTHHHHH-------HHHHHHHHHHHTEEEEEE--BSGGGTTSTTGGGG----B---GG..GHHHHHHHH..HTS--EEE--T......-S------B--EEEEEEE-STTSEESEEEEES--SSTTT---.....-SS--SSBB---EE......EGGGSTT-SSEEEE..--------SEEESS-.SS-EE-- CS
  PF06087.7  17 kenkdtvtLedilgd..kdleevvqfnFlfdldfllsqldekvvenikilivtgtkeeeekreieeela.rkpnvevikaklpepf......gthHsKmmilfyedgslrvviptaNlteeDwgemtqalwispllpllkesksekeesgtrFkedLleYLseYkkkt.deel.............ikrlkkyDFssvnvelvaSvPgkhk.nqktktGllrLkevlkknslktkkekdeqvhivlQvSSiGslgstkkdwlkseflkslekasaskaekkgqeslkkqqkekkpklkiiyPtveevrtslegydsggslhfkkqsaeqkkqqeylr..eylkkwksssa......ekgReravpHiKtyirfskeklksldWalvtSaNLSkaAWGakekkeeelkirsyElGVLvlpkakdvalkvfsaddvier..saqekqtvklrlPyd.lpltpYs 443
                 +++ + +++++++    +++ vv++n lfd  fl +  +e v  ++ ++++++t++++ ++++e   + r p+v+ i+ +  +++      g+hH K  il ye+  +r+vi taN++++D+  ++q++w++++ pll++         ++F ++L++Y ++   ++   +              +k l +yD++  ++ lv  vPg+h+ ++ +++G +r++++l+k +      k +  +i++Q+SS++s   ++        +k+l k+                 + kk +l+i++Pt e++ +s++g  +g  l+ +k + ++       +   yl+kwk + a       + ReravpH+K ++r      +++ W ++tS N+Sk+ WG+ +k e++l ++++ElG+Lv+p + +   ++  +++++++  +  +++t+ ++lP+   pl pY+
  MMETSP0890-20130614|297_1  86 GNEHVAKSFREVMNAgiAHPSWVVLSNMLFDWGFLSDIWPELVSVDRVCIFQHDTDRPQLPANFEI--HgRNPKVHGITHPSGTRIvgdriwGSHHAKFAILGYEES-VRIVITTANFVPMDVLYLSQGVWYQDF-PLLEN-------CVSDFGTSLIDYVQALL-DHgGGPAtrgnwgshfqgslTKALSRYDYTGATAYLVPVVPGYHQgEALHRYGQMRVRSILSKYQ------KHNDGNIIMQFSSMASTNPSY--------IKQLTKTFG--------------GDPKKDRLNIVWPTREDILNSTQGPLAGSHLPARKDNVDKL------HqgGYLYKWKDKTAsrnsplLQARERAVPHMKSMTRIL---SDRVAWSIITSSNISKSSWGDIQKSETQLYCQNWELGILVTPDTLK-CDRLLTKQQSDNSplTYDNQSTAIVPLPFPtSPLVPYA 497
                56677788999998877899999*********************999*******877766666554..237777777777766666777777***************.***************************.76655.......5679*********9998.44344446788889999999************************9776778**********5544......45699************4444........455555544..............67889*****************************8743333......3349******998899999999***************7...88999***********************************999999.33333333333334578899999******878999995 PP

>> PF13091.1  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.015     1e+02      70      94 ..     168     200 ..     135     210 .. 0.74
   2 !   11.6   0.0   2.3e-05      0.16      72     111 ..     391     446 ..     293     463 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.015
  PF13091.1  70 evr.....tslHaKfyifd.gk..taivGSsNl 94 
                +++     +s HaKf+i   ++   ++++++N+
  MMETSP0890-20130614|297_1 168 RIVgdriwGSHHAKFAILGyEEsvRIVITTANF 200
                33466655478*******534466778999998 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.3e-05
  PF13091.1  72 r..........tslHaKfyif.dgk...taivGSsNltksgl.....sgnlElnviied 111
                r             H K +    ++   ++i++SsN++ks++     s   E+ +++++
  MMETSP0890-20130614|297_1 391 RnspllqarerAVPHMKSMTRiLSDrvaWSIITSSNISKSSWgdiqkS---ETQLYCQN 446
                234444444431339999987554457899************886440...55444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.95
# Mc/sec: 1276.38
//
Query:       MMETSP0890-20130614|308_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   56.5   8.8    1.7e-14   52.9   0.1    2.9  3  PF13374.1  Tetratricopeptide repeat
    1.4e-14   53.7   0.0    3.1e-13   49.3   0.1    1.9  1  PF13424.1  Tetratricopeptide repeat
    1.2e-06   27.7   0.9    1.4e-06   27.4   0.1    1.5  2  PF00515.23 Tetratricopeptide repeat
    2.4e-06   26.9   0.1    2.8e-06   26.7   0.0    1.2  1  PF13414.1  TPR repeat
    1.2e-05   24.7   0.1    1.8e-05   24.1   0.1    1.3  1  PF07719.12 Tetratricopeptide repeat
    9.4e-05   21.8   0.2    0.00014   21.2   0.0    1.4  2  PF13176.1  Tetratricopeptide repeat
     0.0015   18.8   0.0      0.002   18.4   0.0    1.3  1  PF13428.1  Tetratricopeptide repeat
     0.0024   18.4   0.0     0.0028   18.1   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
     0.0024   17.4   0.0     0.0034   16.9   0.0    1.2  1  PF13181.1  Tetratricopeptide repeat
     0.0041   17.1   0.3      0.043   13.9   0.0    2.3  2  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.2    0.0053       7.3      33      41 ..       2      10 ..       1      11 [. 0.91
   2 !   52.9   0.1   1.3e-17   1.7e-14       1      42 []      12      53 ..      12      53 .. 0.97
   3 ?    2.1   0.3      0.13   1.8e+02       1       9 [.      54      62 ..      54      63 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0053
  PF13374.1 33 rrllGddHP 41
               ++++G++HP
  MMETSP0890-20130614|308_1  2 EKVHGPNHP 10
               89******9 PP

  == domain 2    score: 52.9 bits;  conditional E-value: 1.3e-17
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +aa lnnLA +l ++g+y+ A +l+e+al ir++ lG++HP+
  MMETSP0890-20130614|308_1 12 VAAGLNNLATLLGNQGKYDGAKPLFERALRIREETLGPNHPQ 53
               7899*************************************5 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.13
  PF13374.1  1 taaalnnLA 9 
               +a+ lnnLA
  MMETSP0890-20130614|308_1 54 VATGLNNLA 62
               6888****9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   2.3e-16   3.1e-13       1      53 [.       9      62 ..       9      63 .] 0.96

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2.3e-16
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnla 53
               hp +a+ lnnla++l  +g+yd A  l+e+al +  ++lg++hp++a+ lnnla
  MMETSP0890-20130614|308_1  9 HPLVAAGLNNLATLLGNQGKYDGAKPLFERALRIrEETLGPNHPQVATGLNNLA 62
               8999******************************88889**************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1     1e-09   1.4e-06       1      32 [.      13      44 ..      13      45 .. 0.93
   2 ?   -2.0   0.0       2.1   2.9e+03       2       8 ..      56      62 ..      55      63 .] 0.75

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a  l+nl+ ++ ++gkyd A   +e+AL++++
   MMETSP0890-20130614|308_1 13 AAGLNNLATLLGNQGKYDGAKPLFERALRIRE 44
                6789*************************975 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.1
                HHHHHHH CS
  PF00515.23  2 kalynlG 8 
                  l+nl+
   MMETSP0890-20130614|308_1 56 TGLNNLA 62
                5789998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.1e-09   2.8e-06       3      44 ..      13      62 ..       8      63 .] 0.87

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.1e-09
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlA 44
               A  l++l+  l ++g+yd+A  ++e+Al+++     pn+++    ++nlA
  MMETSP0890-20130614|308_1 13 AAGLNNLATLLGNQGKYDGAKPLFERALRIReetlgPNHPQvatGLNNLA 62
               66799************************966666688888777999998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   1.3e-08   1.8e-05       1      31 [.      13      43 ..      13      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.3e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a +l+nl+ ++ ++g+y+ A+ +fe+Al++ 
   MMETSP0890-20130614|308_1 13 AAGLNNLATLLGNQGKYDGAKPLFERALRIR 43
                6789************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     1e-07   0.00014       2      35 ..      16      49 ..      15      50 .. 0.92
   2 ?   -3.0   0.1         6   8.1e+03       2       6 ..      58      62 ..      58      63 .] 0.82

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1e-07
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdplda 35
               l+nLa l  ++g+y+ A  l+eraL+++++ l++
  MMETSP0890-20130614|308_1 16 LNNLATLLGNQGKYDGAKPLFERALRIREETLGP 49
               89*********************99999988765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 6
  PF13176.1  2 llnLa 6 
               l+nLa
  MMETSP0890-20130614|308_1 58 LNNLA 62
               79998 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-06     0.002       2      39 ..      14      56 ..      12      62 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.5e-06
  PF13428.1  2 eallalarallalGdpdeAiallrrala.....laPddaeall 39
               + l  la +l ++G +d+A  l++ral+     l+P+++++ +
  MMETSP0890-20130614|308_1 14 AGLNNLATLLGNQGKYDGAKPLFERALRireetLGPNHPQVAT 56
               567789*********************9666666777776665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     2e-06    0.0028       3      38 ..      19      59 ..      17      63 .] 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2e-06
  PF13432.1  3 lArallraGdydeAlaaleaalala.....Peaaealllla 38
               lA +l ++G+yd A +++e+al+       P ++++  +l 
  MMETSP0890-20130614|308_1 19 LATLLGNQGKYDGAKPLFERALRIReetlgPNHPQVATGLN 59
               8999*****************99998999987777766665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.5e-06    0.0034       2      31 ..      14      43 ..      13      46 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.5e-06
               --TTT---HHHHTT-HHHHHHHHH---HHH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
               + ++nl+ ++ + G+yd Ak  +e+al + 
  MMETSP0890-20130614|308_1 14 AGLNNLATLLGNQGKYDGAKPLFERALRIR 43
               5699***********************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.2e-05     0.043      13      33 ..      13      33 ..       5      34 .. 0.84
   2 ?    1.4   0.0      0.31   4.2e+02       2      13 ..      36      52 ..      35      63 .] 0.45

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.2e-05
  PF13431.1 13 adaynnLAelllnnGdleeAe 33
               a  +nnLA+ll n+G+++ A+
  MMETSP0890-20130614|308_1 13 AAGLNNLATLLGNQGKYDGAK 33
               6679**************996 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.31
  PF13431.1  2 yekaleld.....Pnna 13
               +e+al++      Pn++
  MMETSP0890-20130614|308_1 36 FERALRIReetlgPNHP 52
               56666653223334443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 215.67
//
Query:       MMETSP0890-20130614|299_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-18   66.0   0.0    2.5e-18   65.4   0.0    1.3  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.9e-22   2.5e-18       1      57 [.      76     135 ..      76     136 .. 0.97

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1.9e-22
  PF08373.5   1 ieidGpthFyrnsgvll...gktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57 
                ie+dGpth++++ g+l    g t++K riL++lGw + +ipyfeW  l +  ++  Yl++
  MMETSP0890-20130614|299_1  76 IEVDGPTHYLKRKGELQaenGRTRFKSRILSQLGWTIFHIPYFEWDTLIDAADQDSYLES 135
                9************99999***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 520.46
//
Query:       MMETSP0890-20130614|315_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-12   44.5   1.0    1.3e-05   24.6   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)
    3.2e-08   33.0   0.0      0.002   17.7   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-07   0.00076      17      36 ..       6      29 ..       3      30 .. 0.81
   2 !   24.6   0.1   1.9e-09   1.3e-05      16      36 ..      42      66 ..      40      66 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.1e-07
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+         FNpQ+IANt
  MMETSP0890-20130614|315_1  6 LFNAIAdaalGKLDGFNPQDIANT 29
               777777777777889********9 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.9e-09
  PF07671.6 16 rLlaAIr....rnaerFNpQsIANt 36
                L++AI+    +   rFNpQ+IANt
  MMETSP0890-20130614|315_1 42 ALFNAIAdaalKKLDRFNPQDIANT 66
               599*********************9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.9e-07     0.002      18      50 ..       3      35 ..       1      38 [. 0.92
   2 !   14.0   0.0     4e-06     0.027      18      49 ..      40      71 ..      36      72 .] 0.93

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.9e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Ld+++p++  n+vw+++ 
   MMETSP0890-20130614|315_1  3 APALFNAIADAALGKLDGFNPQDIANTVWAFAT 35
                6789***************************96 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlc 49
                a ++f+++a a  ++Ld ++p++  n+ w+++
   MMETSP0890-20130614|315_1 40 APALFNAIADAALKKLDRFNPQDIANTAWAFA 71
                6789**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.44s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 257.52
//
Query:       MMETSP0890-20130614|313_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.54s 00:00:01.02 Elapsed: 00:00:00.75
# Mc/sec: 789.20
//
Query:       MMETSP0890-20130614|316_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   19.8   1.0     0.0008   19.0   0.1    1.9  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.035   13.4   0.0      0.041   13.2   0.0    1.0  1  PF13360.1  PQQ-like domain
      0.049   11.6   0.1      0.049   11.6   0.1    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.8e-07    0.0008      22      39 .]      37      54 ..      18      54 .. 0.87
   2 ?   -1.2   0.1      0.44     2e+03      15      21 ..      71      77 ..      66      79 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.8e-07
                SSTEEEEEETTSEEEEEE CS
  PF00400.27 22 dgpllasgSrDgtirlWd 39
                d ++++s+S D+t r+Wd
   MMETSP0890-20130614|316_1 37 DANRVISASNDKTARIWD 54
                4679*************9 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.44
                EEEEEES CS
  PF00400.27 15 tcvafsp 21
                ++++f p
   MMETSP0890-20130614|316_1 71 SSCDFTP 77
                4566655 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     9e-06     0.041       9      66 ..       8      68 ..       5      75 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9e-06
  PF13360.1  9 daatGkelWrv.....dlkpalgggvseavldggtlfvasakgrlvaldaatGkvlWsksleg 66
               d+++++el ++      ++pa++     ++ d +++++as + +   +da+tG+ l ++++++
  MMETSP0890-20130614|316_1  8 DERNQTELGQSstdftQVNPASKEDI--TSFDANRVISASNDKTARIWDANTGEMLSEFRFNS 68
               56677788888443332233577777..788**************************999976 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.1e-05     0.049     202     253 ..      21      60 ..       2      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
  PF11715.3 202 gllgfkyrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                ++++++          a+  d++s  + + + v++ s D++ R+W+ +tg  
  MMETSP0890-20130614|316_1  21 DFTQVN---------PASKEDITS--F-DANRVISASNDKTARIWDANTGEM 60 
                444333.........444444444..6.556666***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.50s 00:00:00.73 Elapsed: 00:00:00.77
# Mc/sec: 252.08
//
Query:       MMETSP0890-20130614|327_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.96
# Mc/sec: 157.26
//
Query:       MMETSP0890-20130614|329_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   16.8   2.0     0.0068   15.7   0.3    2.2  2  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.05   6.8e+02      10      26 ..      22      38 ..      18      48 .. 0.56
   2 !   15.7   0.3     5e-07    0.0068       2      35 ..      52      85 ..      51      91 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.05
                E-TTEEEESSEBE-TTE CS
  PF00132.19 10 IgpnvvigggviIGdnv 26
                I + + i++ + I d++
   MMETSP0890-20130614|329_1 22 IAAAAEIADVADIADGA 38
                33334444444444443 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 5e-07
                EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19  2 tvIGenvlIgpnvvigggviIGdnviIgagvvig 35
                t+I +++ I   + i++ ++I d++ I+ g+ i+
   MMETSP0890-20130614|329_1 52 TKIADGAGIADAAGIADAAEIADGAEIADGAEIA 85
                79999999**********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 399.39
//
Query:       MMETSP0890-20130614|330_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.056   13.0   0.0      0.067   12.8   0.0    1.1  1  PF06743.10 FAST kinase-like protein, subdomain 1
        2.9    7.7   6.2         13    5.6   0.4    2.1  2  PF11693.3  Protein of unknown function (DUF2990)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.8e-06     0.067      18      54 ..      12      48 ..       8      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.8e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlclleyf 54
                a ++f+++a a  ++Ld++  ++l n+ w+++     
   MMETSP0890-20130614|330_1 12 APALFNAIADAALTKLDGFTHQNLANTTWAFATTSVE 48
                6789***************************987655 PP

>> PF11693.3  Protein of unknown function (DUF2990)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.5    0.0021        14       5      20 ..       6      21 ..       1      28 [. 0.77
   2 ?    5.6   0.4    0.0019        13       5      19 ..      43      57 ..      38      59 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0021
  PF11693.3  5 tAtslAAPtlfdniYd 20
               +  s+ AP+lf+ i d
  MMETSP0890-20130614|330_1  6 ATASVEAPALFNAIAD 21
               345789******8865 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0019
  PF11693.3  5 tAtslAAPtlfdniY 19
               + ts+ AP+lf+ i 
  MMETSP0890-20130614|330_1 43 ATTSVEAPALFNAIA 57
               56899******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.98
# Mc/sec: 146.72
//
Query:       MMETSP0890-20130614|339_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-31  108.4   0.0    1.9e-31  108.3   0.0    1.1  1  PF13306.1  Leucine rich repeats (6 copies)
    1.4e-14   53.4   0.0    6.9e-06   25.6   0.0    2.6  3  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   2.8e-35   1.9e-31      18     112 ..       2      97 ..       1     100 [] 0.86

  Alignments for each domain:
  == domain 1    score: 108.3 bits;  conditional E-value: 2.8e-35
  PF13306.1  18 tipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitips 112
                t+p  +t+IgeyaF +c+sl ++ lp  lt+ige+aF +c+slt++t+p  lt+ige aF +c+sl+++++p slttig+ aFs+c sl+++t+p 
  MMETSP0890-20130614|339_1   2 TLPAGLTTIGEYAFDECTSLAQVILPAGLTTIGEWAFGECTSLTQLTLPVGLTTIGEGAFDGCTSLTQVTLPASLTTIGNAAFSGCtSLNQLTLPV 97 
                788999999999999999999999999999999999999999999999999999999999999999999999999999999999988999998885 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.5e-05       0.1      10      56 ..       5      49 ..       1      51 [. 0.91
   2 !   23.2   0.0   5.4e-09   3.7e-05       2      56 ..      20      72 ..      19      76 .. 0.92
   3 !   25.6   0.0     1e-09   6.9e-06      13      56 ..      53      95 ..      51      96 .. 0.97

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
  PF13855.1 10 nNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                  l++i++ aF  +++L    L    l++i + af  ++sL++L L
  MMETSP0890-20130614|339_1  5 AG-LTTIGEYAFDECTSLAQVILP-AGLTTIGEWAFGECTSLTQLTL 49
               55.99*******************.******999***********98 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.4e-09
  PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               +L  ++L    l++i++ aF+ +++L+ L L    l++i ++af+g++sL+++ L
  MMETSP0890-20130614|339_1 20 SLAQVILPAG-LTTIGEWAFGECTSLTQLTLP-VGLTTIGEGAFDGCTSLTQVTL 72
               5667788888.*********************.******************9988 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 1e-09
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l++i++gaF g+++L+   L   +l++i   af+g++sL +L L
  MMETSP0890-20130614|339_1 53 LTTIGEGAFDGCTSLTQVTLP-ASLTTIGNAAFSGCTSLNQLTL 95
               89*******************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.32s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 357.67
//
Query:       MMETSP0890-20130614|341_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00037   20.0   0.1     0.0086   15.6   0.0    2.2  2  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.3e-07    0.0086      21      56 ..       9      44 ..       4      53 .. 0.84
   2 !    3.1   0.1     0.005        68       3      28 ..      49      73 ..      47      85 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.3e-07
  PF06743.10 21 ffeklasalereLdsispelllnlvwSlclleyfpv 56
                +f+++a a  ++Ld++ p++l n+ w++++++  + 
   MMETSP0890-20130614|341_1  9 LFNAIAAAALTKLDGFTPQALANTTWAFACIGWSNS 44
                899**************************9976555 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.005
  PF06743.10  3 klllpfarLNYkPpnaeeffeklasa 28
                +ll ++++ N+++ n  ++ + l+++
   MMETSP0890-20130614|341_1 49 ALLSSLGTVNHSSLNDVQL-SQLHMV 73
                7899999999999998888.555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 316.32
//
Query:       MMETSP0890-20130614|344_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.31s 00:00:00.59 Elapsed: 00:00:00.50
# Mc/sec: 249.22
//
Query:       MMETSP0890-20130614|348_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-16   57.8   0.8    2.6e-08   33.3   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    9.9e-16   57.3   0.1      1e-15   57.2   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    7.2e-07   28.4   0.5    0.00027   20.2   0.0    2.2  2  PF00515.23 Tetratricopeptide repeat
    4.6e-06   26.0   0.1    5.4e-06   25.8   0.1    1.1  1  PF13414.1  TPR repeat
      7e-06   25.4   0.6     0.0021   17.7   0.0    2.2  2  PF07719.12 Tetratricopeptide repeat
    3.2e-05   23.6   0.3    0.00017   21.4   0.2    1.9  1  PF13431.1  Tetratricopeptide repeat
     0.0001   21.7   0.1     0.0081   15.7   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    0.00011   22.6   0.1    0.00012   22.5   0.1    1.1  1  PF13432.1  Tetratricopeptide repeat
     0.0029   17.6   0.0     0.0037   17.2   0.0    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0061   16.9   0.1       0.85   10.3   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.036   13.7   0.0      0.061   13.0   0.0    1.4  1  PF07720.7  Tetratricopeptide repeat
      0.044   13.4   0.2       0.92    9.3   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.4e-08   2.7e-05      20      42 .]       2      24 ..       1      24 [. 0.97
   2 !   33.3   0.1   2.3e-11   2.6e-08       1      28 [.      25      52 ..      25      53 .] 0.97

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.4e-08
  PF13374.1 20 eAlaleeealairrrllGddHPd 42
               eA +l+e+a +i ++ lG++HPd
  MMETSP0890-20130614|348_1  2 EAKPLYERAIEIGEKALGPNHPD 24
               8*********************8 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 2.3e-11
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
               +a++lnnLA +l+++++y eA++l+++a
  MMETSP0890-20130614|348_1 25 VATTLNNLATLLHDQKKYKEARPLLQRA 52
               89************************98 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   9.2e-19     1e-15      23      72 ..       2      52 ..       1      53 [] 0.98

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 9.2e-19
  PF13424.1 23 eAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
               eA  lye+a+e+  + lg++hpd+a++lnnla+l++ +++y+eA+++l++A
  MMETSP0890-20130614|348_1  2 EAKPLYERAIEIgEKALGPNHPDVATTLNNLATLLHDQKKYKEARPLLQRA 52
               89************************************************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0037       4.3      19      30 ..       2      13 ..       1      18 [. 0.90
   2 !   20.2   0.0   2.4e-07   0.00027       1      27 [.      26      52 ..      26      53 .] 0.94

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0037
                HHHHHHHHHHHH CS
  PF00515.23 19 eAleyyekALel 30
                eA   ye+A+e+
   MMETSP0890-20130614|348_1  2 EAKPLYERAIEI 13
                8999*******8 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 2.4e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekA 27
                a +l+nl+ +++ ++ky+eA    ++A
   MMETSP0890-20130614|348_1 26 ATTLNNLATLLHDQKKYKEARPLLQRA 52
                5689******************99998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   4.7e-09   5.4e-06      21      64 ..       2      52 ..       1      53 [] 0.82

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.7e-09
  PF13414.1 21 eAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekA 64
               eA  +ye+A+e+      pn+++    ++nlA ++  +  +y+eA+  +++A
  MMETSP0890-20130614|348_1  2 EAKPLYERAIEIGekalgPNHPDvatTLNNLATLLHDQK-KYKEARPLLQRA 52
               78999*****9843444488877777***********86.8****9999887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0063       7.2      19      30 ..       2      13 ..       1      18 [. 0.85
   2 !   17.7   0.0   1.8e-06    0.0021       2      27 ..      27      52 ..      26      53 .] 0.93

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0063
                HHHHHHHHHHHH CS
  PF07719.12 19 eAleafekAlel 30
                eA+ ++e+A+e+
   MMETSP0890-20130614|348_1  2 EAKPLYERAIEI 13
                89999***9997 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.8e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekA 27
                  l+nl+ ++  +++y+eA+ ++++A
   MMETSP0890-20130614|348_1 27 TTLNNLATLLHDQKKYKEARPLLQRA 52
                679*********************99 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   1.5e-07   0.00017       1      33 [.       6      46 ..       6      47 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-07
  PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
               lye+a+e+      Pn+   a  +nnLA+ll+++++++eA+
  MMETSP0890-20130614|348_1  6 LYERAIEIGekalgPNHpdvATTLNNLATLLHDQKKYKEAR 46
               6999999944455555544499999***************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.029        33      18      29 ..       3      14 ..       1      23 [. 0.62
   2 !   15.7   0.0   7.1e-06    0.0081       1      24 [.      28      51 ..      28      53 .] 0.95

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.029
  PF13176.1 18 AielyeraLalt 29
               A  lyera+++ 
  MMETSP0890-20130614|348_1  3 AKPLYERAIEIG 14
               556777755544 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.1e-06
  PF13176.1  1 allnLarlysrlgdyekAielyer 24
               +l+nLa l  ++ +y++A  l++r
  MMETSP0890-20130614|348_1 28 TLNNLATLLHDQKKYKEARPLLQR 51
               79*********************9 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1     1e-07   0.00012      13      57 ..       7      52 ..       1      53 [] 0.79

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1e-07
  PF13432.1 13 ydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallraa 57
               y++A+++ e+al  + P+ a  l +la +l+++++++eA+ ll++a
  MMETSP0890-20130614|348_1  7 YERAIEIGEKALGPNhPDVATTLNNLATLLHDQKKYKEARPLLQRA 52
               455555555555555*************************999987 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.2e-06    0.0037      41      83 ..       7      51 ..       4      52 .. 0.58

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.2e-06
               HHHHHHHHHCTSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHHH CS
  PF12895.2 41 ykrAyellrkleldssslgcryllA...rcllklgkydeAiavLek 83
               y+rA+e+  ++ l +++++ +  l+     l++++ky+eA+ +L++
  MMETSP0890-20130614|348_1  7 YERAIEIG-EKALGPNHPDVATTLNnlaTLLHDQKKYKEARPLLQR 51
               66777776.3566666655555332232666677777777777665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0072       8.2      17      41 ..       7      32 ..       1      35 [. 0.55
   2 !   10.3   0.1   0.00074      0.85       3      27 ..      28      52 ..      26      53 .] 0.90

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0072
  PF13428.1 17 pdeAiallrrala.laPddaealllL 41
               +++Ai+  ++al   +Pd a+ l +L
  MMETSP0890-20130614|348_1  7 YERAIEIGEKALGpNHPDVATTLNNL 32
               45666666666423555555555555 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00074
  PF13428.1  3 allalarallalGdpdeAiallrra 27
               +l  la +l ++  ++eA+ ll+ra
  MMETSP0890-20130614|348_1 28 TLNNLATLLHDQKKYKEARPLLQRA 52
               56789******************98 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.3e-05     0.061       7      25 ..      32      50 ..      29      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.3e-05
               HHHHHHHTT-HHHHHHH.. CS
  PF07720.7  7 lAaefynkkkyqeArelfs 25
               lA  ++++kky eAr l++
  MMETSP0890-20130614|348_1 32 LATLLHDQKKYKEARPLLQ 50
               7889***********9977 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.11   1.2e+02      19      30 ..       2      13 ..       1      18 [. 0.85
   2 ?    9.3   0.0   0.00081      0.92       3      27 ..      28      52 ..      26      53 .] 0.88

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.11
               HHHHHHH---HH CS
  PF13181.1 19 kAkeylekalel 30
               +Ak  +e+a+e+
  MMETSP0890-20130614|348_1  2 EAKPLYERAIEI 13
               688999999997 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00081
               -TTT---HHHHTT-HHHHHHHHH-- CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeyleka 27
               +++nl+ ++ + ++y++A   l++a
  MMETSP0890-20130614|348_1 28 TLNNLATLLHDQKKYKEARPLLQRA 52
               799***************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP0890-20130614|347_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 321.80
//
Query:       MMETSP0890-20130614|351_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 190.30
//
Query:       MMETSP0890-20130614|352_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.37s 00:00:00.64 Elapsed: 00:00:00.99
# Mc/sec: 82.30
//
Query:       MMETSP0890-20130614|354_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-09   37.4   1.8    0.00029   20.2   0.1    2.3  2  PF12843.2  Protein of unknown function (DUF3820)
  ------ inclusion threshold ------
        6.3    6.1   8.7         16    4.8   3.1    2.1  2  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF12843.2  Protein of unknown function (DUF3820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   4.2e-08   0.00029      15      48 ..       6      39 ..       2      47 .. 0.91
   2 !   16.4   0.1   6.6e-07    0.0045      14      41 ..      58      85 ..      47      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.2e-08
  PF12843.2 15 PfGKYkgrllidLPeeYlvWfarkGfPkgkLGel 48
                fGK++g+  +++P +Y+ W +++ + kg +G l
  MMETSP0890-20130614|354_1  6 SFGKHRGKHFTQVPWDYIKWARKEVYAKGAIGPL 39
               5******************************975 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 6.6e-07
  PF12843.2 14 MPfGKYkgrllidLPeeYlvWfarkGfP 41
               + fG+Ykg+l+ d+  +Y+ W +++  P
  MMETSP0890-20130614|354_1 58 LTFGQYKGKLVRDIDGSYYRWCKEQEDP 85
               57********************998766 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.1    0.0023        16     113     140 ..     105     132 ..      82     141 .. 0.69
   2 ?    3.4   0.1    0.0063        43     124     135 ..     181     192 ..     150     203 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0023
                 .....----XXXXXXXXXXXXXXXXXXX CS
  PF03066.10 113 esldeeddeedeeeeddeedddeeeeee 140
                 ++l+e+dd  +e+   +ee++d+++  +
   MMETSP0890-20130614|354_1 105 DELEENDDAPNEDHAVEEEEEDDDDFPN 132
                 4556677777677666666666666554 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0063
                 XXXXXXXXXXXX CS
  PF03066.10 124 eeeeddeeddde 135
                 ee ++++ed+de
   MMETSP0890-20130614|354_1 181 EEAKENDEDEDE 192
                 222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.94
# Mc/sec: 558.30
//
Query:       MMETSP0890-20130614|365_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-31  107.2   8.4    1.2e-09   37.5   0.0    4.1  4  PF00400.27 WD domain, G-beta repeat
    4.5e-09   34.9   6.5     0.0018   16.4   0.4    3.0  3  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.4e-09   1.6e-05      16      39 .]       1      24 [.       1      24 [. 0.98
   2 !   27.6   0.2   2.4e-10   1.6e-06       3      39 .]      30      66 ..      28      66 .. 0.93
   3 !   37.5   0.0   1.8e-13   1.2e-09       4      39 .]      73     108 ..      70     108 .. 0.88
   4 !   20.9   0.0     3e-08    0.0002       5      30 ..     115     140 .]     112     140 .] 0.94

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.4e-09
                EEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 16 cvafspdgpllasgSrDgtirlWd 39
                cva+s d++++a++S D+t rlW+
   MMETSP0890-20130614|365_1  1 CVAYSFDSSMIATASTDNTARLWN 24
                9**********************7 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 2.4e-10
                EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                c++tl++  ++V++vafs   ++++as++rD+t ++W+
   MMETSP0890-20130614|365_1 30 CLHTLQHN-NSVWAVAFSKLnRSVVASCGRDRTGKIWN 66
                77777777.****************************7 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 1.8e-13
                 EEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 ++tl gH+s+V+ va+sp+  + la+g +D+++r+W+
   MMETSP0890-20130614|365_1  73 LKTL-GHNSAVYTVAWSPSnETQLATGASDNKVRIWN 108
                 4555.666****************************7 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 3e-08
                 EEEESSSSSEEEEEEESSSTEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgS 30 
                 ++l gH+  Vt++a+spdg  l+s+S
   MMETSP0890-20130614|365_1 115 RELVGHERRVTSIAYSPDGITLVSAS 140
                 6799********************98 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   2.6e-07    0.0018     230     258 ..       7      35 ..       2      44 .. 0.86
   2 !   11.7   0.1   7.1e-06     0.048     222     272 ..      42      86 ..      36     100 .. 0.73
   3 !   11.1   0.2     1e-05      0.07     225     253 ..      89     114 ..      78     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.6e-07
  PF11715.3 230 gqtfvftlsrDgkLRvWnletgqclrttd 258
                ++++++t s D++ R+Wn +t++cl t  
  MMETSP0890-20130614|365_1   7 DSSMIATASTDNTARLWNADTYACLHTLQ 35 
                7899********************98875 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 7.1e-06
  PF11715.3 222 dvsssevegqtfvftlsrDgkLRvWnletgqclrttdileaaellpadsls 272
                +v +s++ ++++v++  rD++ ++Wn+++g cl+t   +      + ++++
  MMETSP0890-20130614|365_1  42 AVAFSKL-NRSVVASCGRDRTGKIWNISNGECLKTLGHN-----SAVYTVA 86 
                5666777.899999******************8887666.....2223333 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 1e-05
  PF11715.3 225 ssevegqtfvftlsrDgkLRvWnletgqc 253
                +   +++t ++t   D+k+R+Wn++t  c
  MMETSP0890-20130614|365_1  89 P---SNETQLATGASDNKVRIWNTDTSEC 114
                4...57777889999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:01.09
# Mc/sec: 307.79
//
Query:       MMETSP0890-20130614|385_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-17   59.6   6.0    6.2e-05   22.5   0.0    3.3  3  PF13516.1  Leucine Rich repeat
    2.5e-09   36.4   3.7    6.2e-06   25.6   0.5    2.5  2  PF12799.2  Leucine Rich repeats (2 copies)
    7.9e-08   31.1   0.0       0.42   10.7   0.0    3.3  3  PF00560.28 Leucine Rich Repeat
    1.5e-07   30.3   0.4        1.1    9.6   0.0    3.4  3  PF13504.1  Leucine rich repeat
    9.1e-06   25.2   3.1      0.048   13.2   1.3    2.9  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.29   11.3   8.6         15    5.8   0.7    3.4  3  PF05658.9  Hep_Hag


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.7e-08   6.2e-05       1      23 [.      12      34 ..      12      35 .. 0.94
   2 !   22.5   0.3   2.8e-08   6.4e-05       1      23 [.      40      62 ..      40      63 .. 0.94
   3 !   16.1   0.3   3.2e-06    0.0072       1      17 [.      76      92 ..      76      97 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.7e-08
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L++LdL +N+ig eG+ a++
  MMETSP0890-20130614|385_1 12 NTSLQELDLRRNKIGAEGAIAIG 34
               789****************9997 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.8e-08
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L++L L++N+ig+eG+ a++
  MMETSP0890-20130614|385_1 40 NTSLQTLSLNSNNIGGEGAIAIG 62
               789****************9997 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 3.2e-06
  PF13516.1  1 lknLtsLdLsnNqigde 17
               +++L+ LdL +N+igde
  MMETSP0890-20130614|385_1 76 NTSLQQLDLADNNIGDE 92
               789*************8 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5   2.7e-09   6.2e-06       1      36 [.      13      53 ..      13      60 .. 0.89
   2 !   20.3   2.1   1.2e-07   0.00028       1      38 [.      41      91 ..      41      99 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.7e-09
  PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpi 36
               t+L++LdL++N+I       ++  l+  ++L+tL+L++N+i
  MMETSP0890-20130614|385_1 13 TSLQELDLRRNKIGAegaiaIGRGLGTNTSLQTLSLNSNNI 53
               79***********85466669988****************9 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.2e-07
  PF12799.2  1 tnLevLdLsnNnIkd.........lppelan....LpnLktLnLsnNpisd 38
               t+L++L+L++NnI           l p++a      ++L++L+L+ N+i d
  MMETSP0890-20130614|385_1 41 TSLQTLSLNSNNIGGegaiaigraLVPTIAPsyvtNTSLQQLDLADNNIGD 91
               79**********964455665556778899545559*************87 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00019      0.42       1      13 [.      14      26 ..      14      38 .. 0.85
   2 !    8.3   0.0    0.0011       2.5       1      13 [.      42      54 ..      42      72 .. 0.83
   3 !    8.9   0.0   0.00071       1.6       1      13 [.      78      90 ..      78     100 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L+eLdL++N++ 
   MMETSP0890-20130614|385_1 14 SLQELDLRRNKIG 26
                7*********996 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0011
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++L+L++Nn+ 
   MMETSP0890-20130614|385_1 42 SLQTLSLNSNNIG 54
                79*********96 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00071
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L+ LdL +Nn+ 
   MMETSP0890-20130614|385_1 78 SLQQLDLADNNIG 90
                79*********98 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00048       1.1       1      13 [.      13      25 ..      13      30 .. 0.90
   2 !    8.1   0.0    0.0016       3.6       1      13 [.      41      53 ..      41      58 .. 0.89
   3 !    9.2   0.0   0.00063       1.4       1      14 [.      77      90 ..      77      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00048
  PF13504.1  1 pnLkeLdLsgnrL 13
               ++L+eLdL++n++
  MMETSP0890-20130614|385_1 13 TSLQELDLRRNKI 25
               69*********97 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
  PF13504.1  1 pnLkeLdLsgnrL 13
               ++L++L+L++n++
  MMETSP0890-20130614|385_1 41 TSLQTLSLNSNNI 53
               69*********97 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00063
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++L++LdL++n++ 
  MMETSP0890-20130614|385_1 77 TSLQQLDLADNNIG 90
               69*********985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.3   2.1e-05     0.048       2      37 ..      14      53 ..      13      56 .. 0.79
   2 !    8.3   0.0   0.00074       1.7      25      37 ..      77      89 ..      64      99 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
  PF13855.1  2 nLkeLdLsnNrlkvipdgaFkgl....snLkvLdLsgnnl 37
               +L+eLdL++N++   +  a ++     ++L++L+L++nn+
  MMETSP0890-20130614|385_1 14 SLQELDLRRNKIGAEGAIAIGRGlgtnTSLQTLSLNSNNI 53
               7999999999999888877774447779999999999998 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00074
  PF13855.1 25 snLkvLdLsgnnl 37
               ++L+ LdL +nn+
  MMETSP0890-20130614|385_1 77 TSLQQLDLADNNI 89
               4566666666665 PP

>> PF05658.9  Hep_Hag
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.034        79       6      12 ..       6      12 ..       3      14 .. 0.63
   2 ?    5.3   0.1      0.01        23      17      26 ..      27      36 ..      22      36 .. 0.71
   3 ?    5.8   0.7    0.0067        15      14      25 ..      52      63 ..      49      64 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.034
               -EE---- CS
  PF05658.9  6 StAlGsn 12
               +tAlG+n
  MMETSP0890-20130614|385_1  6 ATALGTN 12
               5666666 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.01
               STT-EE---T CS
  PF05658.9 17 GdnSvAiGan 26
               +++++AiG++
  MMETSP0890-20130614|385_1 27 AEGAIAIGRG 36
               7788888865 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0067
               EE-STT-EE--- CS
  PF05658.9 14 vAsGdnSvAiGa 25
               +  G++++AiG+
  MMETSP0890-20130614|385_1 52 NIGGEGAIAIGR 63
               566788888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                      115  (0.00841135); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 362.88
//
Query:       MMETSP0890-20130614|387_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-34  117.5   1.2      4e-34  117.3   0.9    1.0  1  PF00210.19 Ferritin-like domain
     0.0034   17.5   0.8     0.0054   16.9   0.6    1.4  1  PF02915.12 Rubrerythrin
     0.0065   15.7   0.0     0.0098   15.1   0.0    1.2  1  PF09419.5  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> PF00210.19  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.9   8.7e-38     4e-34       2     142 .]      22     166 ..      21     166 .. 0.91

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 8.7e-38
                 HHHHHHHHHHHHHHHHHHHHHHHHC..CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--...TTHHHHHHB--SSS......SS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00210.19   2 kaLneqlndelaasyqYlamaayfe..gvglpgfakffkeqadeerehadklaerilklggkpeltrvelkeikkpae......wg.dvlealeaalelekevtkslreliklaeeekDpatadfleefleeqeehikelaalltklkki 142
                 +aLne++++elaa yqY ama  f+  +v+l+  akff e adee++h ++l ++++ +gg     rve+k  ++p         + d++  +e al++ek+v +sl+++++++ +++Dpa +d +ee+l+eq e i++la ++ +l++i
   MMETSP0890-20130614|387_1  22 AALNEHISMELAAGYQYRAMANFFRadSVNLKNTAKFFAENADEEWNHHEELSKYQILRGG-----RVEYKPLDAPVHdfsgteDKsDARIGFESALAMEKKVYDSLLRVHAICGRHNDPACEDKIEEYLTEQIEAIDNLARIVADLDRI 166
                 79***********************************************************.....665555333333444445566***********************************************************9986 PP

>> PF02915.12  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   1.2e-06    0.0054       3     114 ..      24     134 ..      22     149 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHH-....HHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHT-B-------------TTGHHH.HHHHHHHHHHHHHHTHHHHHHHHHHH--SHH CS
  PF02915.12   3 LekAiagEssarklYkelaekakeeg...pqiaelFeelAeeEreHakflnkllkklfldlepsilkeeveyeffpkaeettke.nlkeaiegaeleekeayprYieiaeelgeke 114
                 L++ i++E  a   Y+++a  +++ +   +++a++F e A+eE  H++ l k    + + +e++ l++ v      + ++t ++ + +  +e a ++ek+ y +  ++   +g++ 
   MMETSP0890-20130614|387_1  24 LNEHISMELAAGYQYRAMANFFRADSvnlKNTAKFFAENADEEWNHHEELSKYQILRGGRVEYKPLDAPVH-----DFSGTEDKsDARIGFESALAMEKKVYDSLLRVHAICGRHN 134
                 778899*************96655542277899****************9987665555555543333333.....2223333368889999999999999988888888777765 PP

>> PF09419.5  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-06    0.0098      94     149 ..     108     169 ..      94     175 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.2e-06
  PF09419.5  94 daekaealekslg.....ipVlrhkekKPgcaeevleyfkekkv.vtkadeiavvgDRllTd 149
                ++e a a+ek++      ++ ++ ++  P c++ + ey++e+ + +++   i+   DR +Td
  MMETSP0890-20130614|387_1 108 GFESALAMEKKVYdsllrVHAICGRHNDPACEDKIEEYLTEQIEaIDNLARIVADLDRIGTD 169
                5556666666655222125556666**************99976688899999999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 711.18
//
Query:       MMETSP0890-20130614|378_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-06   27.7   0.5     0.0067   15.9   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)
      1e-05   24.9   0.1     0.0015   18.0   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
      0.043   13.6   0.0       0.56   10.0   0.0    1.9  2  PF14425.1  Immunity protein Imm3
      0.082   12.3   0.2        3.5    7.1   0.0    2.1  2  PF13250.1  Domain of unknown function (DUF4041)


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   9.9e-05      0.34      17      36 ..      11      34 ..       8      34 .. 0.88
   2 !   15.9   0.1     2e-06    0.0067      17      34 ..      48      69 .]      45      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.9e-05
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+         F+pQ+ ANt
  MMETSP0890-20130614|378_1 11 LFNAIAdaalTKLDSFKPQELANT 34
               88999988888999*********9 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2e-06
  PF07671.6 17 LlaAIr....rnaerFNpQsIA 34
               L++AI+    +  + FNpQ+IA
  MMETSP0890-20130614|378_1 48 LFNAIAdaalKKLNSFNPQDIA 69
               99*******************9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.4e-07    0.0015      18      50 ..       8      40 ..       5      43 .. 0.92
   2 !    5.3   0.0    0.0041        14      19      40 ..      46      67 ..      41      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.4e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Lds++p++l n+ w+++ 
   MMETSP0890-20130614|378_1  8 APALFNAIADAALTKLDSFKPQELANTAWAFAT 40
                5789***************************96 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0041
  PF06743.10 19 eeffeklasalereLdsispel 40
                  +f+++a a  ++L+s++p++
   MMETSP0890-20130614|378_1 46 PDLFNAIADAALKKLNSFNPQD 67
                5699****************97 PP

>> PF14425.1  Immunity protein Imm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.025        86      57      84 ..       5      32 ..       1      36 [. 0.84
   2 ?   10.0   0.0   0.00016      0.56      52      83 ..      37      68 ..      14      69 .] 0.90

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.025
  PF14425.1 57 llshekvfvglkegiikrLskinlleve 84
               +++    f+ + +  + +L++++++e+ 
  MMETSP0890-20130614|378_1  5 SVEAPALFNAIADAALTKLDSFKPQELA 32
               67788899999*************9986 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00016
  PF14425.1 52 aigeillshekvfvglkegiikrLskinllev 83
               a++  +++    f+ + +  +k+L+++n++++
  MMETSP0890-20130614|378_1 37 AFATASVEAPDLFNAIADAALKKLNSFNPQDI 68
               6788899999*******************997 PP

>> PF13250.1  Domain of unknown function (DUF4041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.014        49       6      18 ..      11      23 ..      10      26 .. 0.88
   2 ?    7.1   0.0     0.001       3.5       5      22 ..      47      64 ..      45      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.014
  PF13250.1  6 AFNgEcDaaiakv 18
                FN+ +Daa+ k+
  MMETSP0890-20130614|378_1 11 LFNAIADAALTKL 23
               5*********997 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.001
  PF13250.1  5 rAFNgEcDaaiakvkynN 22
               + FN+ +Daa++k++  N
  MMETSP0890-20130614|378_1 47 DLFNAIADAALKKLNSFN 64
               57***********99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 243.16
//
Query:       MMETSP0890-20130614|388_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       942  (0.0688999); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:01.40
# Mc/sec: 564.86
//
Query:       MMETSP0890-20130614|389_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-36  125.9   3.0    1.9e-36  125.5   2.1    1.2  1  PF01545.16 Cation efflux family


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   2.1   1.4e-40   1.9e-36      23     268 ..       3     273 ..       1     291 [. 0.87

  Alignments for each domain:
  == domain 1    score: 125.5 bits;  conditional E-value: 1.4e-40
  PF01545.16  23 nSlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliep............................heidapeialgv.alisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalreldgvlsvhdlhvwkvgsskilveihievdpsl....svseahevaeeiekalkerf 268
                  S al+aD++hs+sd+++++++ ++++la+ p+d ++++G+g+le lg+++++ +l+ la+ i l+s   l++                              + + ++ ++g+ a+ s+l + +l+  +rr+g++s+  ss++ a+a+h+++dal+s++ l+++ l+  +  +   Dp+++ll+a+ i ++gl++ k+++++Ll+a +dp+ ++ l+ a+ +++gv ++  ++++++g+  +lv++ + v+ ++    + s a + ++++ k+++ ++
   MMETSP0890-20130614|389_1   3 TSPALIADGVHSFSDLATDIISVATFKLARVPADDDHTWGHGKLEALGTIAVGGALVTLAGGIALHSSAVLLSLagleeqaiflfgwgensssiddtiniiaTPNQVHSFVAGItAFGSILAKEWLFRETRRVGKESG--SSVIVANAYHHRSDALSSVASLIGIGLAACI-HPA-CDPAAGLLVAVAIGKAGLDVSKQAMDELLDA-IDPKLVRILKTAV-DTPGV-RLTAVRARTTGG-LLLVDADLAVASTSnstlTASAAFHMSQHAAKKMRDTA 273
                 589***************************************************************8888888866777777777777777666666666654444444455588********************999..******************************8.444.9******************************.8************.99999.9***********.*********99999666666666667777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.99
# Mc/sec: 1052.94
//
Query:       MMETSP0890-20130614|392_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-42  142.3   0.0    2.4e-24   85.3   0.0    2.0  2  PF13306.1 Leucine rich repeats (6 copies)
    1.1e-21   76.2   0.0    9.1e-08   31.6   0.0    3.1  3  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
        0.1   12.2   6.8       0.15   11.7   0.1    2.9  4  PF07213.6 DAP10 membrane protein


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   5.3e-28   2.4e-24      18     103 ..       2      87 ..       1      87 [. 0.96
   2 !   61.3   0.0   1.4e-20   6.2e-17       1      63 [.      77     139 ..      77     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 5.3e-28
  PF13306.1  18 tipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc 103
                t+p  +t+Ig  aF++c+sl ++tlp  lt+i+ +aF++c+slt++t+p  lt+ig  +F+nc+sl ++++p  lttig+ aF nc
  MMETSP0890-20130614|392_1   2 TLPVALTTIGRGAFNGCTSLIQLTLPAGLTTIDANAFEGCRSLTKLTLPAGLTTIGVASFRNCTSLIHLTLPVGLTTIGEGAFWNC 87 
                689999*****************************************************************************998 PP

  == domain 2    score: 61.3 bits;  conditional E-value: 1.4e-20
  PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsi 63 
                t+Ig+ aF nc  lt++t+p  +t+Ig++aF++c+sl+++ lp+s+t+i+  aF +c +  +i
  MMETSP0890-20130614|392_1  77 TTIGEGAFWNCIGLTQLTLPVGLTTIGNSAFRGCTSLNQVALPDSITSINYDAFRGCPNDLTI 139
                678888888888888888888888888888888888888888888888888888888654444 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     2e-11   9.1e-08      13      56 ..       7      49 ..       6      52 .. 0.97
   2 !   30.0   0.0     6e-11   2.7e-07       2      56 ..      43      95 ..      42      96 .. 0.97
   3 !   17.9   0.0   3.8e-07    0.0017      13      50 ..      99     135 ..      98     135 .. 0.97

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2e-11
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l++i+ gaF+g+++L  L L    l++i+++af+g++sL++L L
  MMETSP0890-20130614|392_1  7 LTTIGRGAFNGCTSLIQLTLP-AGLTTIDANAFEGCRSLTKLTL 49
               899******************.********************98 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 6e-11
  PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               +L++L L    l++i+  +F ++++L +L L    l++i ++af+++  L++L L
  MMETSP0890-20130614|392_1 43 SLTKLTLPAG-LTTIGVASFRNCTSLIHLTLP-VGLTTIGEGAFWNCIGLTQLTL 95
               8*********.*********************.********************98 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 3.8e-07
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50 
                l++i+++aF g+++L    L  ++++si+ +af g+p+
  MMETSP0890-20130614|392_1  99 LTTIGNSAFRGCTSLNQVALP-DSITSINYDAFRGCPN 135
                899******************.**************96 PP

>> PF07213.6  DAP10 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.3e-05      0.15      13      44 ..       3      35 ..       1      38 [. 0.90
   2 ?   -1.3   0.0      0.38   1.7e+03      26      41 ..      39      55 ..      35      61 .. 0.70
   3 ?    2.8   0.2     0.019        87       8      35 ..      67      97 ..      63     107 .. 0.73
   4 ?    1.3   0.1     0.056   2.6e+02      11      32 ..      93     114 ..      86     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.3e-05
  PF07213.6 13 lpvaaaqtteGscsGcGpl.slpllaGlvaada 44
               lpva + +  G+  Gc +l  l l aGl + da
  MMETSP0890-20130614|392_1  3 LPVALTTIGRGAFNGCTSLiQLTLPAGLTTIDA 35
               9****************98469999****9998 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.38
  PF07213.6 26 sGcGpls.lpllaGlva 41
                Gc +l+ l l aGl +
  MMETSP0890-20130614|392_1 39 EGCRSLTkLTLPAGLTT 55
               58888854777788864 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.019
  PF07213.6  8 lfllllpvaaaqtteGs...csGcGplslpl 35
               l+ l lpv  + + eG+   c G   l+lp+
  MMETSP0890-20130614|392_1 67 LIHLTLPVGLTTIGEGAfwnCIGLTQLTLPV 97
               566889**99999999733366666777775 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.056
  PF07213.6  11 lllpvaaaqtteGscsGcGpls 32 
                l lpv  + + + +  Gc +l 
  MMETSP0890-20130614|392_1  93 LTLPVGLTTIGNSAFRGCTSLN 114
                7789999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 564.30
//
Query:       MMETSP0890-20130614|397_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-13   51.4   1.3    2.2e-13   50.3   0.9    1.6  1  PF08784.6  Replication protein A C terminal
    7.1e-06   25.6   0.0    1.2e-05   24.9   0.0    1.4  1  PF01336.20 OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> PF08784.6  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.9   3.2e-17   2.2e-13       4     101 ..     167     266 ..     154     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 3.2e-17
                HHHHTXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHT.XXXXXXXBHHHHHHHX..TSXHHHHHHHHHHHHHXXXEEESSSS CS
  PF08784.6   4 ltkgasgssag........agaapsvaaggsamgtdgalsgsqaslangltalqqqvlnlikqspegeeGvhvdelaqkl..rlpvndikeavdeLsseGhiYsTiDd 101
                +t        +        ++++ +++a ++++g+ +a+   +a   ngl+a q+ vl++ + +  ++eG h+d + q++   +++n+ ++++d+L+seG +YsTiD+
  MMETSP0890-20130614|397_1 167 NT--------QlattshgiPSSNWNSSAISATVGGGAAPMDLDAVGSNGLSAKQDKVLQYYNVNGTSDEGCHIDNVVQAMssVIDENTTRQIIDSLVSEGFLYSTIDE 266
                33........2334444458899999999999999999999**99999*******************************99889***********************8 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.8e-09   1.2e-05       1      75 [.      60     138 ..      60     139 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.8e-09
                 EEBEEEEEEEE-EECSEEEEEEEE-SSSEEEEEEET.......CCHHHHHCTS-TT-EEEEEEEEEEETTSEEEEEEEEEEE CS
  PF01336.20   1 VtvaGrVtsisdrsggkvafitlrDgtgriqvvlfr.......eeatklaenlkeGdvvrvtGrvkrrpggelelkvekiel 75 
                 V++++ + +i   ++ + + +tl+Dgtg+++++++           ++  +n   G +v +t ++k++ g  + l++ +i++
   MMETSP0890-20130614|397_1  60 VKIVACIENI--DNKDTRLIYTLCDGTGKMNATVWTdpnddafPTTSERRQNSVQGAYVTITAKIKEYGGT-IALSAFDIRP 138
                 7899999999..99999*******************999988888888888888**************999.9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1033.43
//
Query:       MMETSP0890-20130614|402_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   40.0   0.0    2.2e-10   39.8   0.0    1.1  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.02   14.4   0.0    1.4  1  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   3.3e-14   2.2e-10       2      39 .]       7      44 ..       6      44 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 3.3e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++ +l+gH+s+V  +afspdg++++++S+D + r+++
   MMETSP0890-20130614|402_1  7 TLLLVLEGHNSAVLGCAFSPDGKRIITASDDEKARVFS 44
                7889******************************9986 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.9e-06      0.02      14      27 ..      22      35 ..      20      41 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-06
               EEE-----EEEEEE CS
  PF07676.7 14 PawSPDGkkivFtS 27
                a+SPDGk+i+ +S
  MMETSP0890-20130614|402_1 22 CAFSPDGKRIITAS 35
               69********8555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.72
# Mc/sec: 176.40
//
Query:       MMETSP0890-20130614|409_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 461.91
//
Query:       MMETSP0890-20130614|417_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-19   66.7   0.0    1.9e-10   39.9   0.0    2.0  2  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.081   12.6   0.1        1.3    8.8   0.0    2.2  2  PF03474.9 DMRTA motif


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     1e-09     7e-06      23      49 .]       2      28 ..       1      28 [. 0.94
   2 !   39.9   0.0   2.7e-14   1.9e-10       1      35 [.      30      64 ..      30      65 .] 0.98

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1e-09
  PF13475.1 23 LknDkeivlkAvkqngsalsyaseeLr 49
               +++D+e+vl+A+k +g al+ya +eL+
  MMETSP0890-20130614|417_1  2 IRSDREVVLAACKGDGRALEYAAPELQ 28
               79********************99996 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 2.7e-14
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvk 35
               DrEivl av++ g+al ++s+ +++D+e+vl+A+k
  MMETSP0890-20130614|417_1 30 DREIVLLAVSTWGFALMHASPDIRSDREVVLAACK 64
               9********************************99 PP

>> PF03474.9  DMRTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00019       1.3      17      30 ..       3      16 ..       2      24 .. 0.85
   2 ?    1.9   0.0     0.028   1.9e+02      17      28 ..      53      64 ..      52      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00019
  PF03474.9 17 rsvLElvlkrCkGD 30
               rs+ E vl +CkGD
  MMETSP0890-20130614|417_1  3 RSDREVVLAACKGD 16
               7888*********9 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.028
  PF03474.9 17 rsvLElvlkrCk 28
               rs+ E vl +Ck
  MMETSP0890-20130614|417_1 53 RSDREVVLAACK 64
               7888*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       124  (0.00906963); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.74
# Mc/sec: 210.49
//
Query:       MMETSP0890-20130614|415_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-13   47.5   7.4    6.5e-06   25.5   0.2    2.3  2  PF13516.1  Leucine Rich repeat
    1.7e-08   33.8   8.0    2.8e-06   26.7   2.5    1.8  2  PF12799.2  Leucine Rich repeats (2 copies)
    3.2e-05   23.2   0.2       0.25   11.4   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
      4e-05   23.1   2.0    0.00016   21.2   1.3    1.8  1  PF13855.1  Leucine rich repeat
    0.00013   21.5   0.2        0.7   10.2   0.0    2.4  2  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.016   15.5   0.0        2.1    8.8   0.0    2.1  2  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   2.8e-09   6.5e-06       1      24 []      11      34 ..      11      34 .. 0.95
   2 !   24.8   1.5   4.8e-09   1.1e-05       1      24 []      39      62 ..      39      62 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.8e-09
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
               +++L+ L Ls+N+igd+G+ ++an
  MMETSP0890-20130614|415_1 11 NTSLQQLYLSYNKIGDKGANSIAN 34
               789******************997 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 4.8e-09
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
               +++L++LdL +N+ig+eG+ ++an
  MMETSP0890-20130614|415_1 39 NTSLQTLDLDSNNIGNEGANSIAN 62
               789******************997 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   6.9e-06     0.016      20      38 ..       8      26 ..       3      34 .. 0.83
   2 !   26.7   2.5   1.2e-09   2.8e-06       1      38 [.      12      54 ..      12      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.9e-06
  PF12799.2 20 lanLpnLktLnLsnNpisd 38
               l+  ++L++L+Ls+N+i d
  MMETSP0890-20130614|415_1  8 LGTNTSLQQLYLSYNKIGD 26
               7788999999999999987 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.2e-09
  PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
               t+L+ L+Ls+N+I d     + + l+  ++L+tL+L++N+i +
  MMETSP0890-20130614|415_1 12 TSLQQLYLSYNKIGDkgansIANALGTNTSLQTLDLDSNNIGN 54
               79***********87666667666999**************75 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00026      0.58       1      14 [.      13      26 ..      13      38 .. 0.80
   2 !   11.4   0.0   0.00011      0.25       1      14 [.      41      54 ..      41      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00026
                TESEEEETSSBCBC CS
  PF00560.28  1 nLeeLdLsgNnlts 14
                +L+ L+Ls+N++ +
   MMETSP0890-20130614|415_1 13 SLQQLYLSYNKIGD 26
                79*********985 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00011
                TESEEEETSSBCBC CS
  PF00560.28  1 nLeeLdLsgNnlts 14
                +L++LdL++Nn+ +
   MMETSP0890-20130614|415_1 41 SLQTLDLDSNNIGN 54
                79*********984 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.3   6.8e-08   0.00016      20      61 .]       7      52 ..       2      52 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6.8e-08
  PF13855.1 20 aFkglsnLkvLdLsgnnl..ksisp..eafkgLpsLreLnLsgNrl 61
               a++  ++L+ L+Ls+n++  k  ++  +a+   +sL+ L+L++N++
  MMETSP0890-20130614|415_1  7 ALGTNTSLQQLYLSYNKIgdKGANSiaNALGTNTSLQTLDLDSNNI 52
               6778899***********5545544225599999*********998 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00031       0.7       1      14 [.      12      25 ..      12      32 .. 0.90
   2 !    9.4   0.0   0.00058       1.3       1      13 [.      40      52 ..      40      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00031
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++L++L+Ls+n++ 
  MMETSP0890-20130614|415_1 12 TSLQQLYLSYNKIG 25
               69*********985 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00058
  PF13504.1  1 pnLkeLdLsgnrL 13
               ++L++LdL +n++
  MMETSP0890-20130614|415_1 40 TSLQTLDLDSNNI 52
               69******99987 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.015        35       1      15 [.      13      27 ..      13      33 .. 0.82
   2 ?    8.8   0.0   0.00094       2.1       1      15 [.      41      55 ..      41      60 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.015
  PF07723.8  1 sLKtLhLdsvdfddd 15
               sL  L+L+++++ d+
  MMETSP0890-20130614|415_1 13 SLQQLYLSYNKIGDK 27
               7999******99554 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00094
  PF07723.8  1 sLKtLhLdsvdfddd 15
               sL tL Lds+ + ++
  MMETSP0890-20130614|415_1 41 SLQTLDLDSNNIGNE 55
               8*********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 243.16
//
Query:       MMETSP0890-20130614|416_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    8.9  14.6       0.33   10.7   0.6    4.5  4  PF12557.3 Cob(I)alamin adenosyltransferase N terminal
        1.6    8.6  11.5        2.2    8.1   8.0    1.2  1  PF09403.5 Adhesion protein FadA
          2    7.7  11.4        2.2    7.6   7.9    1.1  1  PF05529.7 B-cell receptor-associated protein 31-like
        2.8    7.4   5.7          3    7.2   4.0    1.1  1  PF04194.8 Programmed cell death protein 2, C-terminal putative domain
        6.1    6.7  22.1        8.6    6.2  15.3    1.3  1  PF14265.1 Domain of unknown function (DUF4355)
        6.5    5.9  16.6          4    6.6   2.3    2.0  2  PF11180.3 Protein of unknown function (DUF2968)
        8.5    6.4  14.1       0.74    9.8   4.7    2.4  2  PF12808.2 Micro-tubular organiser Mto1 C-term Mto2-binding region


Domain annotation for each model (and alignments):
>> PF12557.3  Cob(I)alamin adenosyltransferase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.072   1.4e+02      11      18 ..       3      10 ..       2      15 .. 0.86
   2 ?   10.7   0.6   0.00017      0.33      11      23 ..      17      29 ..      16      29 .. 0.92
   3 ?    2.2   0.1      0.08   1.6e+02      11      18 ..      31      38 ..      30      42 .. 0.88
   4 ?    0.8   0.1      0.22   4.2e+02      14      19 ..      64      69 ..      64      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.072
  PF12557.3 11 aRMqrkKe 18
               +R +r+K+
  MMETSP0890-20130614|416_1  3 ERAARVKA 10
               899****8 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00017
  PF12557.3 11 aRMqrkKevvDar 23
               +R +r+K+++Da+
  MMETSP0890-20130614|416_1 17 ERAARVKDAQDAE 29
               89*********96 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.08
  PF12557.3 11 aRMqrkKe 18
               +R +r+K+
  MMETSP0890-20130614|416_1 31 ERAARVKA 38
               899***98 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.22
  PF12557.3 14 qrkKev 19
               q++K++
  MMETSP0890-20130614|416_1 64 QKLKAQ 69
               9***98 PP

>> PF09403.5  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.0    0.0011       2.2      43     113 ..       1      74 [.       1      75 [] 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
  PF09403.5  43 eeaRfeeekeekeaaekevaklkelkaeleeklaklkee...sktrfykdeykkLlkkyeeylkkleekieeke 113
                e +R  + k+ek+a  ++ a+ k+ +   +e+ a++k+e   +k    k++ +k l + +  l+kl ++i++++
  MMETSP0890-20130614|416_1   1 ESERAARVKAEKDAESERAARVKDAQDAESERAARVKAEkdaAKALADKEKAEKALADKDAELQKLKAQISDQR 74 
                67888889999999988889999988888888888887722245566788899999999999******999985 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.9    0.0011       2.2     132     185 ..      19      72 ..       3      75 .] 0.68

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0011
  PF05529.7 132 klealkkqaesatkaakklkeekekklkeeveklkkeleekekdlealkkqaeg 185
                 ++  ++q +++++aa+  +e++ +k+ ++ ek +k l++k+ +l+ lk q++ 
  MMETSP0890-20130614|416_1  19 AARVKDAQDAESERAARVKAEKDAAKALADKEKAEKALADKDAELQKLKAQISD 72 
                22223333333333444337888889999**********************976 PP

>> PF04194.8  Programmed cell death protein 2, C-terminal putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.0    0.0016         3       9      69 ..      13      72 ..       5      75 .] 0.63

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0016
  PF04194.8  9 dieeetleeeslpeepeeeeidaleeeekeskggk..eeeetdelkakeeDktFqkFkkrvar 69
               d+e+e++ + +  ++ e+e+ + +++e++     k   ++e+ e++  ++D++ qk k ++++
  MMETSP0890-20130614|416_1 13 DAESERAARVKDAQDAESERAARVKAEKDA---AKalADKEKAEKALADKDAELQKLKAQISD 72
               444444444444444444444444444333...333578888888899**********99986 PP

>> PF14265.1  Domain of unknown function (DUF4355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  15.3    0.0044       8.6       9      65 ..      14      70 ..       1      74 [. 0.65

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0044
  PF14265.1  9 tdkevdkaiakekakwekeqqek........keeaeklakmsaeekaekeleklkkeleelkael 65
               +++e ++++++++         +        k e+ + + + ++ekaek l ++++el++lka++
  MMETSP0890-20130614|416_1 14 AESERAARVKDAQD--------AeseraarvKAEKDAAKALADKEKAEKALADKDAELQKLKAQI 70
               22222223332222........1233333346799999*************************97 PP

>> PF11180.3  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.0    0.0031         6     125     168 ..       2      45 ..       1      48 [. 0.95
   2 ?    6.6   2.3     0.002         4     108     139 ..      43      74 ..      41      75 .] 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0031
  PF11180.3 125 earaerLqadlelareQeaqvaarqkqarkeaaaLeaqreaaqa 168
                ++ra+r +a+ +++ e  a v+++q +  + aa  +a++ aa+a
  MMETSP0890-20130614|416_1   2 SERAARVKAEKDAESERAARVKDAQDAESERAARVKAEKDAAKA 45 
                68**************************************9986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.002
  PF11180.3 108 aqleaqkaqlerliaasearaerLqadlelar 139
                a++ a+k+++e+ +a ++a++++L+a+++ +r
  MMETSP0890-20130614|416_1  43 AKALADKEKAEKALADKDAELQKLKAQISDQR 74 
                77889*********************998776 PP

>> PF12808.2  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.9       0.3   5.8e+02      15      25 ..      16      26 ..       2      34 .. 0.71
   2 ?    9.8   4.7   0.00038      0.74      12      49 ..      35      74 ..      30      75 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.3
  PF12808.2 15 aerEaRkldrs 25
               +er aR++d +
  MMETSP0890-20130614|416_1 16 SERAARVKDAQ 26
               67777777755 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00038
  PF12808.2 12 kLKaerEaRk..ldrsgarerLeelkaeNrdLkaelerer 49
               + Kae++a+k   d+  a + L++++ae ++Lka+++ +r
  MMETSP0890-20130614|416_1 35 RVKAEKDAAKalADKEKAEKALADKDAELQKLKAQISDQR 74
               789***7754228***********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1682  (0.123025); expected 273.4 (0.02)
Passed bias filter:                      837  (0.06122); expected 273.4 (0.02)
Passed Vit filter:                       124  (0.00906963); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.47s 00:00:00.90 Elapsed: 00:00:00.89
# Mc/sec: 201.94
//
Query:       MMETSP0890-20130614|414_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.99
# Mc/sec: 772.16
//
Query:       MMETSP0890-20130614|421_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-14   51.0   1.0    1.6e-07   30.9   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    8.6e-13   47.9   0.2    8.8e-13   47.8   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    8.3e-07   28.4   0.2    9.4e-07   28.2   0.2    1.1  1  PF13414.1  TPR repeat
      2e-06   27.0   0.2    0.00079   18.9   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
    4.9e-06   26.9   0.1    5.5e-06   26.7   0.1    1.0  1  PF13432.1  Tetratricopeptide repeat
    6.2e-06   25.4   0.9    0.00053   19.3   0.0    2.3  2  PF00515.23 Tetratricopeptide repeat
    1.2e-05   24.7   1.3    0.00079   19.0   0.0    2.3  3  PF07719.12 Tetratricopeptide repeat
    0.00012   21.9   0.5    0.00047   20.0   0.3    1.9  1  PF13431.1  Tetratricopeptide repeat
     0.0019   18.5   0.4      0.096   13.2   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
     0.0022   17.9   0.1     0.0027   17.6   0.1    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.022   14.3   0.3       0.12   12.1   0.0    1.9  2  PF13181.1  Tetratricopeptide repeat
       0.11   12.8   0.6          1    9.8   0.1    2.1  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     5e-07   0.00057      21      41 ..       2      22 ..       1      23 [. 0.94
   2 !   30.9   0.1   1.4e-10   1.6e-07       1      28 [.      24      51 .]      24      51 .] 0.97

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5e-07
  PF13374.1 21 AlaleeealairrrllGddHP 41
               A  l+e+al i++++l ++HP
  MMETSP0890-20130614|421_1  2 AMLLYERALRICEEVLDPNHP 22
               778*****************9 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 1.4e-10
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
               +a++lnnLA++l  +++y eA++l+++a
  MMETSP0890-20130614|421_1 24 VASTLNNLARLLESQKKYKEARPLLQRA 51
               79************************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   7.8e-16   8.8e-13      27      72 ..       5      51 .]       1      51 [] 0.94

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 7.8e-16
  PF13424.1 27 lyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
               lye+al +  ++l ++hp +a++lnnla+l++ +++y+eA+++l++A
  MMETSP0890-20130614|421_1  5 LYERALRIcEEVLDPNHPKVASTLNNLARLLESQKKYKEARPLLQRA 51
               8*******8888899******************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.2   8.2e-10   9.4e-07      22      64 ..       2      51 .]       1      51 [] 0.83

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 8.2e-10
  PF13414.1 22 AieayekAlel.....dpnnae...lyynlAlaylklgkdyeeAledyekA 64
               A  +ye+Al++     dpn+++    ++nlA +++ +  +y+eA+  +++A
  MMETSP0890-20130614|421_1  2 AMLLYERALRIceevlDPNHPKvasTLNNLARLLESQK-KYKEARPLLQRA 51
               7889******744444799977888***********86.8****9988887 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0051       5.8      21      34 ..       5      18 ..       1      23 [. 0.64
   2 !   18.9   0.1   6.9e-07   0.00079       1      24 [.      27      50 ..      27      51 .] 0.95

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0051
  PF13176.1 21 lyeraLaltkdpld 34
               lyeraL++ ++ ld
  MMETSP0890-20130614|421_1  5 LYERALRICEEVLD 18
               77777766655554 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 6.9e-07
  PF13176.1  1 allnLarlysrlgdyekAielyer 24
               +l+nLarl +++ +y++A  l++r
  MMETSP0890-20130614|421_1 27 TLNNLARLLESQKKYKEARPLLQR 50
               79*********************9 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   4.8e-09   5.5e-06      13      57 ..       6      51 .]       5      51 .] 0.97

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 4.8e-09
  PF13432.1 13 ydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallraa 57
               y++Al++ e++l+ + P+ a  l +la++l  +++++eA+ ll++a
  MMETSP0890-20130614|421_1  6 YERALRICEEVLDPNhPKVASTLNNLARLLESQKKYKEARPLLQRA 51
               89**************************************999986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.017        19      20      32 ..       2      14 ..       1      16 [. 0.79
   2 !   19.3   0.0   4.6e-07   0.00053       1      27 [.      25      51 .]      25      51 .] 0.94

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHT CS
  PF00515.23 20 AleyyekALelnP 32
                A   ye+AL++ +
   MMETSP0890-20130614|421_1  2 AMLLYERALRICE 14
                5667*****9976 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 4.6e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekA 27
                a +l+nl+ ++ +++ky+eA    ++A
   MMETSP0890-20130614|421_1 25 ASTLNNLARLLESQKKYKEARPLLQRA 51
                6789*****************999998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.022        25      20      32 ..       2      14 ..       1      16 [. 0.80
   2 ?    2.9   0.1     0.098   1.1e+02      24      32 ..       6      14 ..       6      21 .. 0.63
   3 !   19.0   0.0   6.9e-07   0.00079       2      27 ..      26      51 .]      25      51 .] 0.94

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.022
                HHHHHHHHHHH-T CS
  PF07719.12 20 AleafekAleldP 32
                A  ++e+Al+++ 
   MMETSP0890-20130614|421_1  2 AMLLYERALRICE 14
                66789****9986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.098
                HHHHHHH-T CS
  PF07719.12 24 fekAleldP 32
                +e+Al+++ 
   MMETSP0890-20130614|421_1  6 YERALRICE 14
                566666554 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 6.9e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekA 27
                  l+nl+++++ +++y+eA+ ++++A
   MMETSP0890-20130614|421_1 26 STLNNLARLLESQKKYKEARPLLQRA 51
                579*********************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   4.1e-07   0.00047       1      33 [.       5      45 ..       5      46 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4.1e-07
  PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
               lye+al+++     Pn+   a  +nnLA+ll ++++++eA+
  MMETSP0890-20130614|421_1  5 LYERALRICeevldPNHpkvASTLNNLARLLESQKKYKEAR 45
               68888888444444777888********************8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.054        62      17      35 ..       6      22 ..       1      28 [. 0.54
   2 !   13.2   0.1   8.5e-05     0.096       3      27 ..      27      51 .]      25      51 .] 0.92

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.054
  PF13428.1 17 pdeAiallrralalaPdda 35
               +++A++ ++++  l+P+++
  MMETSP0890-20130614|421_1  6 YERALRICEEV--LDPNHP 22
               34555555555..445554 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 8.5e-05
  PF13428.1  3 allalarallalGdpdeAiallrra 27
               +l  lar+l+ +  ++eA+ ll+ra
  MMETSP0890-20130614|421_1 27 TLNNLARLLESQKKYKEARPLLQRA 51
               6778*******************98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.4e-06    0.0027      41      83 ..       6      50 ..       2      51 .] 0.57

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.4e-06
               HHHHHHHHHCTSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
  PF12895.2 41 ykrAyellrkleldssslgcry...llArcllklgkydeAiavLek 83
               y+rA+ +++ + ld+++++ +     lAr l+ ++ky+eA+ +L++
  MMETSP0890-20130614|421_1  6 YERALRICE-EVLDPNHPKVAStlnNLARLLESQKKYKEARPLLQR 50
               677777773.333345544444222345777777777777777765 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.5   5.7e+02      17      28 ..       6      17 ..       2      18 .. 0.63
   2 ?   12.1   0.0    0.0001      0.12       2      27 ..      26      51 .]      25      51 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.5
               HHHHHHHHH--- CS
  PF13181.1 17 ydkAkeylekal 28
               y+ A+   e++l
  MMETSP0890-20130614|421_1  6 YERALRICEEVL 17
               556666666665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.0001
               --TTT---HHHHTT-HHHHHHHHH-- CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeyleka 27
                +++nl++++++ ++y++A   l++a
  MMETSP0890-20130614|421_1 26 STLNNLARLLESQKKYKEARPLLQRA 51
               5799***************9877765 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.41   4.7e+02      16      27 ..       6      17 ..       2      18 .. 0.75
   2 ?    9.8   0.1   0.00088         1       5      25 ..      30      50 ..      30      51 .] 0.93

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.41
               HHHHHHHHHHHH CS
  PF13174.1 16 tdeAlealerli 27
               +++Al++ e+++
  MMETSP0890-20130614|421_1  6 YERALRICEEVL 17
               688888888887 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00088
               HHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealer 25
               +la++++ ++++ eA+ +l+r
  MMETSP0890-20130614|421_1 30 NLARLLESQKKYKEARPLLQR 50
               69*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 200.35
//
Query:       MMETSP0890-20130614|420_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-14   50.6   2.3    1.5e-06   27.5   0.8    2.3  2  PF13516.1  Leucine Rich repeat
    5.1e-08   32.2   0.1    8.3e-08   31.5   0.0    1.4  1  PF12799.2  Leucine Rich repeats (2 copies)
    5.1e-05   22.6   0.0       0.12   12.4   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
    6.4e-05   22.5   0.3    0.00023   20.7   0.2    1.8  1  PF13855.1  Leucine rich repeat
    0.00026   20.5   0.0       0.38   11.0   0.0    2.3  2  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.6e-08   7.1e-05       1      23 [.      11      33 ..      11      34 .. 0.95
   2 !   27.5   0.8   5.4e-10   1.5e-06       1      24 []      39      62 ..      39      62 .. 0.95

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.6e-08
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L++L L +N+ig eG++aLa
  MMETSP0890-20130614|420_1 11 NTSLQELWLRSNKIGAEGAKALA 33
               789*******************8 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 5.4e-10
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
               +++L+ LdL++N+igdeG+ ++an
  MMETSP0890-20130614|420_1 39 NTSLQKLDLGGNNIGDEGANSIAN 62
               789******************997 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     3e-11   8.3e-08       1      38 [.      12      54 ..      12      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3e-11
  PF12799.2  1 tnLevLdLsnNnI.....kdlppelanLpnLktLnLsnNpisd 38
               t+L++L+L++N+I     k l   la+ ++L+ L+L +N+i d
  MMETSP0890-20130614|420_1 12 TSLQELWLRSNKIgaegaKALATALARNTSLQKLDLGGNNIGD 54
               79***********55444457666*****************87 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00078       2.1       1      13 [.      13      25 ..      13      36 .. 0.90
   2 !   12.4   0.0   4.2e-05      0.12       1      13 [.      41      53 ..      41      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00078
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L+eL L++N++ 
   MMETSP0890-20130614|420_1 13 SLQELWLRSNKIG 25
                7*********985 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.2e-05
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++LdL gNn+ 
   MMETSP0890-20130614|420_1 41 SLQKLDLGGNNIG 53
                79*********97 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   8.4e-08   0.00023       1      38 [.      12      53 ..      12      62 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 8.4e-08
  PF13855.1  1 pnLkeLdLsnNrlkvi....pdgaFkglsnLkvLdLsgnnlk 38
               ++L+eL+L++N++         +a+ + ++L++LdL+gnn+ 
  MMETSP0890-20130614|420_1 12 TSLQELWLRSNKIGAEgakaLATALARNTSLQKLDLGGNNIG 53
               58**********9865223334567777************95 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0     0.002       5.4       1      13 [.      12      24 ..      12      32 .. 0.90
   2 !   11.0   0.0   0.00014      0.38       1      14 [.      40      53 ..      40      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.002
  PF13504.1  1 pnLkeLdLsgnrL 13
               ++L+eL L++n++
  MMETSP0890-20130614|420_1 12 TSLQELWLRSNKI 24
               69*********97 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00014
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++L++LdL gn++ 
  MMETSP0890-20130614|420_1 40 TSLQKLDLGGNNIG 53
               69*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.74
# Mc/sec: 207.25
//
Query:       MMETSP0890-20130614|424_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       809  (0.059172); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.77
# Mc/sec: 1176.39
//
Query:       MMETSP0890-20130614|428_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.068   12.5   0.1      0.091   12.1   0.1    1.2  1  PF00544.14 Pectate lyase


Domain annotation for each model (and alignments):
>> PF00544.14  Pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.7e-06     0.091      10      53 ..       3      42 ..       1      67 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.7e-06
                --ECCCS-EE-ECCCEEE-E----EEE-.--EEE-S-ECEEEES CS
  PF00544.14 10 ktidakskvnveanktiiGlganvklanigiliikkssnviirn 53
                +tid++ + n++ n+ +iG g+nv+++n +i    + s+vi+  
   MMETSP0890-20130614|428_1  3 ETIDTRVENNFGYNDETIGAGNNVHVEN-HI--S-SNSDVILDA 42
                5899************************.44..4.668999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 609.24
//
Query:       MMETSP0890-20130614|427_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-29  100.4   0.1    6.9e-29  100.1   0.1    1.0  1  PF00071.17 Ras family
    1.6e-05   25.2   0.0    4.1e-05   23.9   0.0    1.7  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
       0.02   13.9   0.1      0.024   13.7   0.0    1.1  1  PF02421.13 Ferrous iron transport protein B
       0.04   13.0   0.1      0.046   12.8   0.0    1.2  1  PF00025.16 ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.1     2e-32   6.9e-29      67     160 ..       1      94 [.       1      96 [. 0.98

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 2e-32
                 HHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17  67 lyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +yyr+a ++++vydit++esf+ +k+wv+e++r  + nv+i+L GnK+Dl++kr+v++ee++++a+++g+ ++etSAk+++nv+++f+e++r +
   MMETSP0890-20130614|427_1   1 MYYRGAAAAIVVYDITNKESFNGAKSWVKELQRRGDPNVVIALAGNKADLQSKRKVNFEEAQRYAEDNGILHMETSAKSSMNVKDLFNEIARML 94 
                 69****************************************************************************************9976 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.2e-08   4.1e-05      73     119 .]       5      49 ..       1      49 [. 0.86
   2 ?   -1.3   0.0      0.79   2.7e+03      93      98 ..      84      89 ..      55     109 .. 0.58

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.2e-08
  PF08477.8  73 kadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 a+a+++vyd+t++es++ +   ++w +el+++g   +++ l gnk D
  MMETSP0890-20130614|427_1   5 GAAAAIVVYDITNKESFNGA---KSWVKELQRRGDPnVVIALAGNKAD 49 
                689****************8...67888877777766*********98 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.79
  PF08477.8 93 sellaw 98
               + l+++
  MMETSP0890-20130614|427_1 84 KDLFNE 89
               333333 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.1e-06     0.024     107     169 ..      38     103 ..      29     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.1e-06
                 SEEEEE..ETHHHHHC---EB-H.HHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX.. CS
  PF02421.13 107 pvvval..nmiDeaekkgikidl.kkLselLgvpvvktvarkkkgieelleaiievaekeekekkl 169
                 +vv+al  n+ D  +k++++++  ++ +e  g+  ++t+a+++ ++++l+++i+++  k+++++++
   MMETSP0890-20130614|427_1  38 NVVIALagNKADLQSKRKVNFEEaQRYAEDNGILHMETSAKSSMNVKDLFNEIARMLPKQSQQTER 103
                 45666555999**99999999751678999***********************9999887766554 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05     0.046      78     134 ..       2      57 ..       1     101 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.3e-05
                 GCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HH CS
  PF00025.16  78 YfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealsee 134
                 Y++   a i v D +++e ++ ak+ +k+l ++ +  +v++ + +NK Dl++  + +
   MMETSP0890-20130614|427_1   2 YYRGAAAAIVVYDITNKESFNGAKSWVKELQRRGD-PNVVIALAGNKADLQSKRKVN 57 
                 99**************************9876665.67888889******8765433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      572  (0.0418373); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 399.39
//
Query:       MMETSP0890-20130614|437_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00089   18.9   0.6        0.8    9.5   0.1    2.6  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   5.8e-05       0.8      27      39 .]       1      13 [.       1      13 [. 0.94
   2 !    7.6   0.0   0.00023       3.1      17      38 ..      39      60 ..      23      61 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.8e-05
                EEEETTSEEEEEE CS
  PF00400.27 27 asgSrDgtirlWd 39
                as + D tir+W+
   MMETSP0890-20130614|437_1  1 ASVGNDYTIRIWH 13
                899*********6 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00023
                EEEESSSTEEEEEETTSEEEEE CS
  PF00400.27 17 vafspdgpllasgSrDgtirlW 38
                +a+spdg++la+g +++t  +W
   MMETSP0890-20130614|437_1 39 LAYSPDGTVLACGLYNSTNEIW 60
                799**********888887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 310.35
//
Query:       MMETSP0890-20130614|436_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-42  142.2   5.9    9.2e-15   53.8   0.2    4.1  4  PF13374.1  Tetratricopeptide repeat
    6.2e-37  125.2   0.3    4.9e-22   77.5   0.1    2.1  2  PF13424.1  Tetratricopeptide repeat
      2e-15   55.5   5.2    5.8e-07   28.7   0.0    3.2  3  PF00515.23 Tetratricopeptide repeat
      3e-15   55.4   2.3      6e-07   28.8   1.1    2.9  3  PF13414.1  TPR repeat
    5.5e-14   50.6   0.7    6.8e-05   22.2   0.1    3.2  3  PF13176.1  Tetratricopeptide repeat
    5.7e-14   50.7   4.1    1.8e-05   24.2   0.0    3.2  3  PF07719.12 Tetratricopeptide repeat
    9.6e-11   41.9   8.5    5.5e-06   26.7   0.9    2.3  2  PF13432.1  Tetratricopeptide repeat
    2.5e-09   36.1   1.8      0.008   15.7   0.1    3.2  3  PF13181.1  Tetratricopeptide repeat
    1.3e-08   34.6   3.3      0.021   15.3   0.0    3.3  3  PF13428.1  Tetratricopeptide repeat
    2.6e-08   33.3   2.0      0.068   13.2   0.0    3.9  3  PF13431.1  Tetratricopeptide repeat
    2.5e-07   30.6   0.0    0.00045   20.1   0.0    2.3  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    1.2e-06   28.1   0.7       0.19   11.4   0.0    3.2  3  PF07720.7  Tetratricopeptide repeat
    6.7e-06   25.9   0.3      0.099   13.0   0.0    3.2  3  PF07721.9  Tetratricopeptide repeat
    0.00018   21.6   1.5       0.33   11.3   0.1    3.2  3  PF13174.1  Tetratricopeptide repeat
     0.0022   17.0   0.2       0.83    8.8   0.0    2.5  2  PF10516.4  SHNi-TPR
     0.0029   17.8   5.5         10    6.5   0.0    4.4  5  PF14357.1  Domain of unknown function (DUF4404)
      0.008   15.0   0.1        6.5    5.4   0.0    2.9  3  PF04910.9  Transcriptional repressor TCF25
  ------ inclusion threshold ------
      0.013   14.4   0.0       0.85    8.5   0.0    2.0  2  PF08631.5  Meiosis protein SPO22/ZIP4 like
      0.017   15.0   0.8         28    4.6   0.0    3.3  3  PF14346.1  Domain of unknown function (DUF4398)
      0.022   14.3   2.8        2.6    7.5   0.0    3.3  3  PF10938.3  YfdX protein
      0.062   12.8   0.0       0.33   10.5   0.0    2.0  2  PF09141.5  Talin, middle domain
      0.079   12.7   0.6        9.6    6.0   0.1    2.9  3  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0035       2.2      31      42 .]       2      13 ..       1      13 [. 0.92
   2 !   49.9   0.0   2.6e-16   1.6e-13       1      42 []      14      55 ..      14      55 .. 0.99
   3 !   53.8   0.2   1.5e-17   9.2e-15       5      42 .]      60      97 ..      56      97 .. 0.97
   4 !   31.2   0.1   1.9e-10   1.2e-07       1      42 []      98     139 ..      98     139 .. 0.97

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0035
  PF13374.1 31 irrrllGddHPd 42
               ir++ lG++HP+
  MMETSP0890-20130614|436_1  2 IREETLGPNHPQ 13
               8**********5 PP

  == domain 2    score: 49.9 bits;  conditional E-value: 2.6e-16
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a++ nnLA +l ++g+y+eA +l+++a +i+++ lG +HPd
  MMETSP0890-20130614|436_1 14 VATTINNLAAVLLQQGKYDEAKPLFHRAIEIKEKTLGQNHPD 55
               79***************************************8 PP

  == domain 3    score: 53.8 bits;  conditional E-value: 1.5e-17
  PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               l+nLA +l+++g+y+eA  l+e+al ir++llG++HPd
  MMETSP0890-20130614|436_1 60 LHNLAGLLQDQGKYDEAKMLYERALRIREELLGPNHPD 97
               89***********************************8 PP

  == domain 4    score: 31.2 bits;  conditional E-value: 1.9e-10
  PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                +a +l+nL  +l+++++y eA++l+ +al i  + l++ HP+
  MMETSP0890-20130614|436_1  98 VALTLHNLSGLLNDQKKYKEARPLLLRALNIMVAKLPPQHPH 139
                799**************************************6 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   5.2e-15   3.2e-12      35      78 .]       4      47 ..       1      47 [. 0.94
   2 !   77.5   0.1   7.9e-25   4.9e-22       1      75 [.      53     128 ..      53     131 .. 0.96

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 5.2e-15
  PF13424.1 35 lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                ++lg++hp++a++ nnla ++l++g+ydeA++++++A+ei ek
  MMETSP0890-20130614|436_1  4 EETLGPNHPQVATTINNLAAVLLQQGKYDEAKPLFHRAIEIKEK 47
               6789*************************************986 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 7.9e-25
  PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                hpd+   l+nla++l+ +g+ydeA  lye+al +  ++lg++hpd+a +l+nl+ l++ +++y+eA+++l +Al+i
  MMETSP0890-20130614|436_1  53 HPDVSGGLHNLAGLLQDQGKYDEAKMLYERALRIrEELLGPNHPDVALTLHNLSGLLNDQKKYKEARPLLLRALNI 128
                8999999***************************88888***********************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   9.3e-10   5.8e-07       4      32 ..      18      46 ..      15      47 .. 0.91
   2 !   22.7   0.3     7e-08   4.4e-05       4      32 ..      60      88 ..      59      90 .. 0.92
   3 ?    5.0   0.0     0.028        17      11      28 ..     109     126 ..     107     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 9.3e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnP 32
                 +nl++++l++gkydeA   + +A+e+ +
   MMETSP0890-20130614|436_1 18 INNLAAVLLQQGKYDEAKPLFHRAIEIKE 46
                59************************976 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 7e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnP 32
                l nl+ +++ +gkydeA   ye+AL++++
   MMETSP0890-20130614|436_1 60 LHNLAGLLQDQGKYDEAKMLYERALRIRE 88
                679***********************986 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.028
                 HHHTT-HHHHHHHHHHHH CS
  PF00515.23  11 ylklgkydeAleyyekAL 28 
                 +  ++ky+eA     +AL
   MMETSP0890-20130614|436_1 109 LNDQKKYKEARPLLLRAL 126
                 5689*******9999998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.9e-07   0.00012      33      67 ..       8      44 ..       6      46 .. 0.84
   2 !   28.8   1.1   9.7e-10     6e-07       6      67 ..      60     128 ..      55     129 .. 0.84
   3 !   12.9   0.0   9.3e-05     0.058       2      39 ..      98     140 ..      97     152 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.9e-07
  PF13414.1 33 dpnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                pn+++     +nlA+++l++g +y+eA   +++A+e+
  MMETSP0890-20130614|436_1  8 GPNHPQvatTINNLAAVLLQQG-KYDEAKPLFHRAIEI 44
               5777777779999999999999.699999999999997 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 9.7e-10
  PF13414.1   6 lkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                l +l+  l  +g+ydeA  +ye+Al+++     pn+++    + nl+ ++  +  +y+eA+  + +Al++
  MMETSP0890-20130614|436_1  60 LHNLAGLLQDQGKYDEAKMLYERALRIReellgPNHPDvalTLHNLSGLLNDQK-KYKEARPLLLRALNI 128
                67999*********************9666667888777777777777777765.7*****999999976 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 9.3e-05
  PF13414.1   2 nAealkelGnalfkegdydeAieayekAlel.....dpnnael 39 
                +A++l +l   l  +++y+eA  ++ +Al +      p+++ +
  MMETSP0890-20130614|436_1  98 VALTLHNLSGLLNDQKKYKEARPLLLRALNImvaklPPQHPHI 140
                7999*************************86333325888765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.6e-06    0.0022       1      31 [.      17      47 ..      17      52 .. 0.87
   2 !   22.2   0.1   1.1e-07   6.8e-05       2      34 ..      60      92 ..      59      94 .. 0.91
   3 !    8.0   0.0    0.0039       2.4       1      29 [.     101     129 ..     101     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.6e-06
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
               +++nLa +  ++g+y++A  l+ ra+++++ 
  MMETSP0890-20130614|436_1 17 TINNLAAVLLQQGKYDEAKPLFHRAIEIKEK 47
               689*********************8887765 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.1e-07
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
               l+nLa l +++g+y++A  lyeraL+++++ l+
  MMETSP0890-20130614|436_1 60 LHNLAGLLQDQGKYDEAKMLYERALRIREELLG 92
               89*********************9999988776 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0039
  PF13176.1   1 allnLarlysrlgdyekAielyeraLalt 29 
                +l+nL  l  ++ +y++A  l+ raL + 
  MMETSP0890-20130614|436_1 101 TLHNLSGLLNDQKKYKEARPLLLRALNIM 129
                799*********************88665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.8e-08   1.8e-05       4      31 ..      18      45 ..      15      47 .. 0.91
   2 !   18.7   0.2   1.5e-06   0.00095       3      31 ..      59      87 ..      57      90 .. 0.92
   3 !    8.0   0.0    0.0043       2.7       7      30 ..     105     128 ..      99     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.8e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleld 31
                 +nl+ +++++g+y+eA+ +f +A+e+ 
   MMETSP0890-20130614|436_1 18 INNLAAVLLQQGKYDEAKPLFHRAIEIK 45
                589**********************985 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleld 31
                +l+nl+ ++  +g+y+eA+ ++e+Al++ 
   MMETSP0890-20130614|436_1 59 GLHNLAGLLQDQGKYDEAKMLYERALRIR 87
                589***********************986 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0043
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   7 lGlayyklgdyeeAleafekAlel 30 
                 l  ++  +++y+eA+ ++ +Al +
   MMETSP0890-20130614|436_1 105 LSGLLNDQKKYKEARPLLLRALNI 128
                 55555579*************976 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.9   8.9e-09   5.5e-06       3      59 ..      21      85 ..      19      87 .. 0.90
   2 !   25.9   0.7   1.6e-08   9.8e-06       3      63 ..      63     136 ..      61     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 8.9e-09
  PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
               lA  ll++G+ydeA +++ +a++          P+    l +la +l ++g++deA  l+++al+
  MMETSP0890-20130614|436_1 21 LAAVLLQQGKYDEAKPLFHRAIEIKektlgqnhPDVSGGLHNLAGLLQDQGKYDEAKMLYERALR 85
               899***************77777777*******************************77777765 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1.6e-08
  PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaPd 63 
                lA +l ++G+ydeA  ++e+al+          P+ a  l +l  +l ++++++eA+ ll +al     +l P+
  MMETSP0890-20130614|436_1  63 LAGLLQDQGKYDEAKMLYERALRIReellgpnhPDVALTLHNLSGLLNDQKKYKEARPLLLRALnimvaKLPPQ 136
                8999**************99999999*******************************77766665666555555 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-05     0.013       5      32 ..      19      46 ..      15      48 .. 0.91
   2 !   15.7   0.1   1.3e-05     0.008       4      30 ..      60      86 ..      57      88 .. 0.91
   3 ?    3.3   0.0      0.12        75       3      28 ..     101     126 ..      99     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-05
               TT---HHHHTT-HHHHHHHHH---HHHH CS
  PF13181.1  5 ynlGdiYrqlGdydkAkeylekalelkp 32
               +nl+ +++q G+yd+Ak  + +a+e+k 
  MMETSP0890-20130614|436_1 19 NNLAAVLLQQGKYDEAKPLFHRAIEIKE 46
               79999*********************96 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.3e-05
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++ + G+yd+Ak  +e+al +
  MMETSP0890-20130614|436_1 60 LHNLAGLLQDQGKYDEAKMLYERALRI 86
               789999*******************98 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.12
                -TTT---HHHHTT-HHHHHHHHH--- CS
  PF13181.1   3 ayynlGdiYrqlGdydkAkeylekal 28 
                +++nl+ ++ + ++y++A   l +al
  MMETSP0890-20130614|436_1 101 TLHNLSGLLNDQKKYKEARPLLLRAL 126
                578999999*********98888877 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.3e-05     0.021       5      34 ..      19      56 ..      15      66 .. 0.74
   2 !   15.0   0.1   4.2e-05     0.026       4      39 ..      60     100 ..      57     105 .. 0.84
   3 ?    5.7   0.1      0.04        25       4      29 ..     102     127 ..      98     147 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.3e-05
  PF13428.1  5 lalarallalGdpdeAiallrrala........laPdd 34
                 la++ll++G +deA  l+ ra++         +Pd 
  MMETSP0890-20130614|436_1 19 NNLAAVLLQQGKYDEAKPLFHRAIEikektlgqNHPDV 56
               579********************985555544445555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4.2e-05
  PF13428.1   4 llalarallalGdpdeAiallrrala.....laPddaeall 39 
                l  la +l ++G +deA  l++ral+     l+P+++++ l
  MMETSP0890-20130614|436_1  60 LHNLAGLLQDQGKYDEAKMLYERALRireelLGPNHPDVAL 100
                5679*********************9777777788887765 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.04
  PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                l  l  +l ++  ++eA+ ll ral 
  MMETSP0890-20130614|436_1 102 LHNLSGLLNDQKKYKEARPLLLRALN 127
                5578889999*************984 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00011     0.068       9      33 ..      11      35 ..       8      36 .. 0.88
   2 !   10.8   0.0   0.00069      0.43       9      33 ..      53      77 ..      48      78 .. 0.88
   3 ?    6.4   0.1     0.017        10       9      33 ..      95     119 ..      79     120 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00011
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
               +P  a   nnLA +ll +G+++eA+
  MMETSP0890-20130614|436_1 11 HPQVATTINNLAAVLLQQGKYDEAK 35
               56668899***************97 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00069
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
               +P+ +  ++nLA ll+++G+++eA+
  MMETSP0890-20130614|436_1 53 HPDVSGGLHNLAGLLQDQGKYDEAK 77
               67777889****************8 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.017
  PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                +P+ a  ++nL  ll ++++++eA+
  MMETSP0890-20130614|436_1  95 HPDVALTLHNLSGLLNDQKKYKEAR 119
                466699999**************98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0022       1.4      64      80 ..      21      37 ..       2      41 .. 0.58
   2 !   20.1   0.0   7.3e-07   0.00045       5      83 ..      38     124 ..      35     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0022
               HHHHHHHTT-HHHHCCC CS
  PF12895.2 64 lArcllklgkydeAiav 80
               lA +ll++gkydeA  +
  MMETSP0890-20130614|436_1 21 LAAVLLQQGKYDEAKPL 37
               45777777777777544 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 7.3e-07
                HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHHH CS
  PF12895.2   5 yknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk......leldssslgcryll.A..rcllklgkydeAiavLek 83 
                ++ A+ + ek l +++  p  +  l++lA  l+ +g+y++A  l+++      + l +++++ ++ l +    l +++ky+eA+ +L +
  MMETSP0890-20130614|436_1  38 FHRAIEIKEKTLGQNH--PdVSGGLHNLAGLLQDQGKYDEAKMLYERalrireELLGPNHPDVALTLhNlsGLLNDQKKYKEARPLLLR 124
                6889999999999987..436669999******************99*****6667779999999887854556799*******99976 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00064       0.4       7      25 ..      21      39 ..      19      45 .. 0.91
   2 !   11.4   0.0   0.00031      0.19       4      27 ..      60      81 ..      59      90 .. 0.81
   3 ?    3.0   0.0      0.13        82      14      23 ..     112     121 ..     111     127 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00064
               HHHHHHHTT-HHHHHHH.. CS
  PF07720.7  7 lAaefynkkkyqeArelfs 25
               lAa++ +++ky+eA  lf+
  MMETSP0890-20130614|436_1 21 LAAVLLQQGKYDEAKPLFH 39
               89************98877 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00031
               HHHHHHHHHHTT-HHHHHHH..HH CS
  PF07720.7  4 lyslAaefynkkkyqeArelfsYa 27
               l+ lA  +++++ky+eA  l  Y+
  MMETSP0890-20130614|436_1 60 LHNLAGLLQDQGKYDEAKML--YE 81
               6778999**********998..65 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.13
                TT-HHHHHHH CS
  PF07720.7  14 kkkyqeArel 23 
                +kky eAr l
  MMETSP0890-20130614|436_1 112 QKKYKEARPL 121
                9******977 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00016     0.099       6      25 ..      20      39 ..      19      40 .. 0.89
   2 !    9.3   0.1    0.0024       1.5       4      21 ..      60      77 ..      58      87 .. 0.89
   3 ?   -1.1   0.0       5.7   3.5e+03      16      24 ..     114     122 ..      99     124 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00016
               --HHHHHH-------HHHHH CS
  PF07721.9  6 aLArallalGdldeAralle 25
               +LA +ll++G +deA  l++
  MMETSP0890-20130614|436_1 20 NLAAVLLQQGKYDEAKPLFH 39
               7**************88776 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0024
               H---HHHHHH-------H CS
  PF07721.9  4 llaLArallalGdldeAr 21
               l++LA +l+++G +deA 
  MMETSP0890-20130614|436_1 60 LHNLAGLLQDQGKYDEAK 77
               79**************95 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 5.7
                -----HHHH CS
  PF07721.9  16 dldeArall 24 
                 + eAr ll
  MMETSP0890-20130614|436_1 114 KYKEARPLL 122
                567899887 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0083       5.2       6      28 ..      21      43 ..      20      44 .. 0.84
   2 !   11.3   0.1   0.00054      0.33       5      28 ..      62      85 ..      59      87 .. 0.78
   3 ?   -0.9   0.0       4.4   2.7e+03      10      26 ..     110     125 ..     105     127 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0083
               HHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerlik 28
               la +++++g++deA+ ++ r i+
  MMETSP0890-20130614|436_1 21 LAAVLLQQGKYDEAKPLFHRAIE 43
               677788888*********99986 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00054
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la +++ +g++deA+ ++er ++
  MMETSP0890-20130614|436_1 62 NLAGLLQDQGKYDEAKMLYERALR 85
               5665556677***********986 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 4.4
                HHHHHHHHHHHHHHHHH CS
  PF13174.1  10 yyklgdtdeAlealerl 26 
                 + ++++ eA+ +l r 
  MMETSP0890-20130614|436_1 110 ND-QKKYKEARPLLLRA 125
                44.45999999877555 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.011       6.8      12      37 ..      26      51 ..      17      52 .. 0.86
   2 !    8.8   0.0    0.0013      0.83      14      37 ..      70      93 ..      62      94 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.011
  PF10516.4 12 lEnEnFpqAveDlrkaLeLreqllpp 37
               l ++++++A   + +a+e++e++l +
  MMETSP0890-20130614|436_1 26 LQQGKYDEAKPLFHRAIEIKEKTLGQ 51
               678999999999**********9876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0013
  PF10516.4 14 nEnFpqAveDlrkaLeLreqllpp 37
               ++++++A   +++aL +re+ll p
  MMETSP0890-20130614|436_1 70 QGKYDEAKMLYERALRIREELLGP 93
               6789999999***********976 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.016        10      65      82 ..      10      27 ..       4      29 .. 0.87
   2 ?    4.2   0.0     0.083        52      61      82 ..      48      69 ..      27      72 .. 0.79
   3 ?    4.2   0.0     0.085        53      64      80 ..      93     109 ..      69     112 .. 0.78
   4 ?    3.6   0.0      0.13        82      38      72 ..     109     143 ..     104     148 .. 0.80
   5 ?   -0.6   0.0       2.6   1.6e+03      25      43 ..     145     163 ..     142     168 .] 0.66

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.016
  PF14357.1 65 eHPklagtlrnildsLan 82
               +HP++a t++n++ +L +
  MMETSP0890-20130614|436_1 10 NHPQVATTINNLAAVLLQ 27
               7************99976 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.083
  PF14357.1 61 rFeaeHPklagtlrnildsLan 82
                  ++HP+++g l n++  L+ 
  MMETSP0890-20130614|436_1 48 TLGQNHPDVSGGLHNLAGLLQD 69
               56689***********999875 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.085
  PF14357.1  64 aeHPklagtlrnildsL 80 
                 +HP++a tl n++  L
  MMETSP0890-20130614|436_1  93 PNHPDVALTLHNLSGLL 109
                58**********98877 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.13
  PF14357.1  38 leeedaseaedeslaerlneaverFeaeHPklagt 72 
                l+++++ ++ ++ l+  ln +v++   +HP+++++
  MMETSP0890-20130614|436_1 109 LNDQKKYKEARPLLLRALNIMVAKLPPQHPHIKMA 143
                56666677777888999999***********9986 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 2.6
  PF14357.1  25 aeLkelrddieealeeeda 43 
                 +L+ l+++i++  +e+++
  MMETSP0890-20130614|436_1 145 MALNGLDNQIRKSRKEKKN 163
                5678888999888777333 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.019        12      35      74 ..      10      49 ..       6      58 .. 0.86
   2 ?    5.4   0.0      0.01       6.5      42      78 ..      59      95 ..      47     110 .. 0.84
   3 ?    2.8   0.0     0.065        41      42      70 ..     101     129 ..      93     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.019
  PF04910.9 35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfilervf 74
               ++P    t+ +l+ v+ +qg++ +A  l  ra+ i e+ +
  MMETSP0890-20130614|436_1 10 NHPQVATTINNLAAVLLQQGKYDEAKPLFHRAIEIKEKTL 49
               6899999************************987766665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.01
  PF04910.9 42 tLlqlsevyreqgdfevAndlieraLfilervfhpsF 78
               +L +l+ +++ qg++ +A  l eraL i e+ + p+ 
  MMETSP0890-20130614|436_1 59 GLHNLAGLLQDQGKYDEAKMLYERALRIREELLGPNH 95
               688999********************99999988876 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.065
  PF04910.9  42 tLlqlsevyreqgdfevAndlieraLfil 70 
                tL +ls +++ q+++++A  l+ raL i+
  MMETSP0890-20130614|436_1 101 TLHNLSGLLNDQKKYKEARPLLLRALNIM 129
                8999*********************9776 PP

>> PF08631.5  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.033        20      41      80 ..      21      57 ..      13      62 .. 0.80
   2 ?    8.5   0.0    0.0014      0.85       5      67 ..      69     130 ..      65     150 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.033
  PF08631.5 41 iGkellerktdfseavkwlkraldlleklakidqkstels 80
                +  ll++  +++ea+ ++ ra+++ e  + ++q++++ s
  MMETSP0890-20130614|436_1 21 LAAVLLQQG-KYDEAKPLFHRAIEIKE--KTLGQNHPDVS 57
               556678888.9**************44..58889998876 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0014
  PF08631.5   5 regdldlAehllskakslknlldpdlteeLarvlyniGkellerktdfseavkwlkraldlle 67 
                ++g +d A++l+++a + ++ l   +    a +l n    l  +k +++ea  +l ral+++ 
  MMETSP0890-20130614|436_1  69 DQGKYDEAKMLYERALRIREELLGPNHPDVALTLHNLSGLLNDQK-KYKEARPLLLRALNIMV 130
                899*****************6666677899***************.*************9964 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.046        28      52      75 ..      22      45 ..       9      53 .. 0.86
   2 ?    4.4   0.1     0.054        34      57      72 ..      69      84 ..      62      90 .. 0.84
   3 ?    2.9   0.0      0.16     1e+02      57      72 ..     111     126 ..     108     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.046
  PF14346.1 52 AkaalaegkyeeArrlaeqAeada 75
               A  +l++gky+eA+ l  +A+   
  MMETSP0890-20130614|436_1 22 AAVLLQQGKYDEAKPLFHRAIEIK 45
               88999***********99998655 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.054
  PF14346.1 57 aegkyeeArrlaeqAe 72
               ++gky+eA++l e+A 
  MMETSP0890-20130614|436_1 69 DQGKYDEAKMLYERAL 84
               79***********997 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.16
  PF14346.1  57 aegkyeeArrlaeqAe 72 
                +++ky+eAr l+ +A 
  MMETSP0890-20130614|436_1 111 DQKKYKEARPLLLRAL 126
                6899*****9999986 PP

>> PF10938.3  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0041       2.6     122     140 ..      20      38 ..      14      44 .. 0.81
   2 ?    1.6   0.0      0.28   1.8e+02     129     139 ..      69      79 ..      62      87 .. 0.67
   3 ?    3.4   0.0     0.077        48     129     149 ..     111     131 ..     104     133 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0041
  PF10938.3 122 kqAaelldegkyyeAkaaL 140
                + Aa ll++gky+eAk   
  MMETSP0890-20130614|436_1  20 NLAAVLLQQGKYDEAKPLF 38 
                5699999999999998655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.28
  PF10938.3 129 degkyyeAkaa 139
                d+gky+eAk  
  MMETSP0890-20130614|436_1  69 DQGKYDEAKML 79 
                78888888754 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.077
  PF10938.3 129 degkyyeAkaaLkkAedsvvv 149
                d++ky+eA+  L  A++ +v 
  MMETSP0890-20130614|436_1 111 DQKKYKEARPLLLRALNIMVA 131
                899************998875 PP

>> PF09141.5  Talin, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00053      0.33      78     114 ..      37      73 ..       2      86 .. 0.66
   2 ?   -0.3   0.0       1.1   6.9e+02      92     114 ..      93     115 ..      89     132 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00053
  PF09141.5  78 vdydavgaavstissnlpevskevkllaalleddteg 114
                + + a+    +t+++n p+vs +++ la+ll+d+ + 
  MMETSP0890-20130614|436_1  37 LFHRAIEIKEKTLGQNHPDVSGGLHNLAGLLQDQGKY 73 
                347788888899*********************9743 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.1
  PF09141.5  92 snlpevskevkllaalleddteg 114
                 n p+v+  ++ l++ll+d+++ 
  MMETSP0890-20130614|436_1  93 PNHPDVALTLHNLSGLLNDQKKY 115
                57788999999999999998633 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12        77      18      34 ..      28      44 ..      20      59 .. 0.82
   2 ?    6.0   0.1     0.015       9.6      18      34 ..      70      86 ..      60      91 .. 0.89
   3 ?   -0.4   0.0       1.6   9.8e+02      28      40 ..     115     127 ..     110     133 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.12
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +gky+eA  l   A+e+
   MMETSP0890-20130614|436_1 28 QGKYDEAKPLFHRAIEI 44
                78899998888888887 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.015
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +gky+eA  lY+ Al +
   MMETSP0890-20130614|436_1 70 QGKYDEAKMLYERALRI 86
                79************976 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHH CS
  PF04212.13  28 YkeAlelLlqalk 40 
                 YkeA  lLl+al+
   MMETSP0890-20130614|436_1 115 YKEARPLLLRALN 127
                 4555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.64
# Mc/sec: 629.04
//
Query:       MMETSP0890-20130614|431_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   11.9   0.1       0.12   11.4   0.0    1.3  1  PF11316.3 Putative rhamnosyl transferase


Domain annotation for each model (and alignments):
>> PF11316.3  Putative rhamnosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     9e-06      0.12     115     155 ..      18      58 ..      14     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9e-06
  PF11316.3 115 pvlqfrlDDDDAvsvdfvarlreaaadlrplleknkrvaid 155
                ++l + +D DDA+svd+ a++ +  ++ ++++ +  rva++
  MMETSP0890-20130614|431_1  18 HLLVTSMDVDDAISVDYFAQIERWYSNEARFWGQSWRVACS 58 
                5677889**************99999999999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 823.26
//
Query:       MMETSP0890-20130614|442_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-16   60.4   0.9    3.1e-12   46.1   0.1    2.0  2  PF13424.1  Tetratricopeptide repeat
    3.1e-12   45.8  10.1    6.3e-11   41.6   1.3    2.9  3  PF13374.1  Tetratricopeptide repeat
    6.7e-08   31.7   2.6    7.6e-07   28.3   0.9    2.1  2  PF00515.23 Tetratricopeptide repeat
    2.3e-07   30.2   0.8    2.8e-07   29.9   0.5    1.1  1  PF13414.1  TPR repeat
    2.8e-06   26.9   1.7     0.0014   18.5   0.1    2.4  2  PF13431.1  Tetratricopeptide repeat
    4.7e-06   26.0   3.3    2.1e-05   23.9   1.2    2.0  2  PF07719.12 Tetratricopeptide repeat
    8.2e-06   26.2   9.5    0.00075   19.9   1.3    1.6  2  PF13432.1  Tetratricopeptide repeat
    7.7e-05   22.9   0.8      0.055   13.7   0.3    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
    0.00015   21.2   1.3    0.00015   21.2   0.9    1.9  2  PF13176.1  Tetratricopeptide repeat
     0.0013   19.0   1.9     0.0026   18.1   1.3    1.5  1  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.014   15.1   0.0    1.1  1  PF11846.3  Domain of unknown function (DUF3366)
      0.016   15.4   1.8      0.075   13.3   0.1    2.4  2  PF07721.9  Tetratricopeptide repeat
      0.042   13.5   0.8      0.096   12.3   0.3    1.7  2  PF13181.1  Tetratricopeptide repeat
       0.11   11.3   0.1       0.11   11.3   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1   3.2e-15   3.1e-12      37      77 ..       2      42 ..       1      43 [. 0.96
   2 !   15.1   0.0   1.5e-05     0.015      35      56 ..      42      63 ..      40      65 .] 0.86

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 3.2e-15
  PF13424.1 37 elgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               e+g+dhp +a+aln+la l+  +g+yd+A++++e+Al+i++
  MMETSP0890-20130614|442_1  2 EFGPDHPKVAKALNDLALLLDLQGNYDQAKQLHERALRIRQ 42
               79*************************************98 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.5e-05
  PF13424.1 35 lrelgddhpdtaralnnlanly 56
               ++ lg dhpd+a +lnnla+ +
  MMETSP0890-20130614|442_1 42 QENLGLDHPDVAESLNNLAQSL 63
               678999*************987 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.23   2.2e+02      36      41 ..       3       8 ..       2       9 .. 0.90
   2 !   41.6   1.3   6.5e-14   6.3e-11       1      42 []      10      51 ..      10      51 .. 0.98
   3 !    7.4   0.1    0.0039       3.8       1      12 [.      52      63 ..      52      65 .] 0.84

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.23
  PF13374.1 36 lGddHP 41
               +G+dHP
  MMETSP0890-20130614|442_1  3 FGPDHP 8 
               7****9 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 6.5e-14
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a aln+LAl+l  +g+y++A +l+e+al ir++ lG dHPd
  MMETSP0890-20130614|442_1 10 VAKALNDLALLLDLQGNYDQAKQLHERALRIRQENLGLDHPD 51
               799**************************************8 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0039
  PF13374.1  1 taaalnnLAlal 12
               +a +lnnLA  l
  MMETSP0890-20130614|442_1 52 VAESLNNLAQSL 63
               79*******865 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.9   7.8e-10   7.6e-07       1      34 []      11      44 ..      11      44 .. 0.96
   2 ?    2.9   0.0     0.084        82       1      12 [.      53      64 ..      53      65 .] 0.85

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 7.8e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPnn 34
                akal+ l++++  +g+yd+A +  e+AL+++ +n
   MMETSP0890-20130614|442_1 11 AKALNDLALLLDLQGNYDQAKQLHERALRIRQEN 44
                89****************************9876 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.084
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a++l+nl++ ++
   MMETSP0890-20130614|442_1 53 AESLNNLAQSLH 64
                799*****9875 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.5   2.8e-10   2.8e-07       2      47 ..      10      63 ..       9      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.8e-10
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlay 47
               +A+al+ l+  l  +g+yd+A ++ e+Al+++        p+ ae ++nlA+++
  MMETSP0890-20130614|442_1 10 VAKALNDLALLLDLQGNYDQAKQLHERALRIRqenlgldhPDVAESLNNLAQSL 63
               79*****************************666666667999********986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.4e-06    0.0014       9      34 .]       7      32 ..       4      32 .. 0.94
   2 !    7.8   0.1    0.0039       3.8       9      24 ..      49      64 ..      33      65 .] 0.81

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.4e-06
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAeq 34
               +P+ a a+n LA+ll  +G++++A+q
  MMETSP0890-20130614|442_1  7 HPKVAKALNDLALLLDLQGNYDQAKQ 32
               68889*******************98 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0039
  PF13431.1  9 dPnnadaynnLAelll 24
               +P+ a+++nnLA+ l+
  MMETSP0890-20130614|442_1 49 HPDVAESLNNLAQSLH 64
               5888********9875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.2   2.1e-08   2.1e-05       1      33 [.      11      43 ..      11      44 .. 0.93
   2 ?    1.8   0.0      0.26   2.5e+02       1      12 [.      53      64 ..      53      65 .] 0.83

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 2.1e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a+al+ l+l++  +g+y++A+++ e+Al++  +
   MMETSP0890-20130614|442_1 11 AKALNDLALLLDLQGNYDQAKQLHERALRIRQE 43
                79***************************9766 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.26
                HHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayy 12
                ae l+nl++++ 
   MMETSP0890-20130614|442_1 53 AESLNNLAQSLH 64
                78999**99985 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.7   1.3e-05     0.012      28      60 ..       8      40 ..       4      44 .. 0.80
   2 !   19.9   1.3   7.7e-07   0.00075       2      43 ..      16      65 .]      15      65 .] 0.94

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.3e-05
  PF13432.1 28 PeaaeallllaeallrlgrldeAaallraalal 60
               P+ a al  la +l  +g++d+A +l ++al++
  MMETSP0890-20130614|442_1  8 PKVAKALNDLALLLDLQGNYDQAKQLHERALRI 40
               788889999999999999999999998888865 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 7.7e-07
  PF13432.1  2 alArallraGdydeAlaaleaalala........Peaaeallllaeallr 43
               +lA++l  +G+yd+A +++e+al+          P+ ae l +la++l++
  MMETSP0890-20130614|442_1 16 DLALLLDLQGNYDQAKQLHERALRIRqenlgldhPDVAESLNNLAQSLHH 65
               78999999***********99999999*******************9976 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0013       1.3      61      80 ..       2      21 ..       1      25 [. 0.88
   2 !   13.7   0.3   5.7e-05     0.055      38      81 ..      21      64 ..      16      65 .] 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0013
  PF14357.1 61 rFeaeHPklagtlrnildsL 80
               +F  +HPk+a++l++++  L
  MMETSP0890-20130614|442_1  2 EFGPDHPKVAKALNDLALLL 21
               6889***********99877 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.7e-05
  PF14357.1 38 leeedaseaedeslaerlne.averFeaeHPklagtlrnildsLa 81
               l+  + + ++ ++l er  +   e+   +HP++a+ l+n+++sL+
  MMETSP0890-20130614|442_1 21 LDL-QGNYDQAKQLHERALRiRQENLGLDHPDVAESLNNLAQSLH 64
               445.566777778888877767789999***************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.9   1.5e-07   0.00015       1      32 [.      13      44 ..      13      48 .. 0.89
   2 ?    0.3   0.1      0.71   6.9e+02       1       7 [.      55      61 ..      55      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.5e-07
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdp 32
               al+ La l   +g+y++A +l+eraL+++++ 
  MMETSP0890-20130614|442_1 13 ALNDLALLLDLQGNYDQAKQLHERALRIRQEN 44
               7999********************88888765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.71
  PF13176.1  1 allnLar 7 
               +l+nLa+
  MMETSP0890-20130614|442_1 55 SLNNLAQ 61
               79***98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.3   2.7e-06    0.0026       2      43 ..      12      61 ..      11      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.7e-06
  PF13428.1  2 eallalarallalGdpdeAiallrrala........laPddaealllLar 43
               +al +la +l  +G++d+A +l +ral+        ++Pd ae l +La+
  MMETSP0890-20130614|442_1 12 KALNDLALLLDLQGNYDQAKQLHERALRirqenlglDHPDVAESLNNLAQ 61
               6899***********************96666666666666666666665 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.4e-05     0.014     146     175 ..      13      42 ..       4      64 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-05
  PF11846.3 146 virrlalalallGkeeeArdamaeaaalyp 175
                 +++lal+l l+G+ ++A++++++a ++ +
  MMETSP0890-20130614|442_1  13 ALNDLALLLDLQGNYDQAKQLHERALRIRQ 42 
                5789********************998877 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.7e-05     0.075       3      23 ..      13      33 ..      11      36 .. 0.87
   2 ?    1.1   0.0      0.67   6.5e+02       3      13 ..      55      65 .]      53      65 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.7e-05
               HH---HHHHHH-------HHH CS
  PF07721.9  3 allaLArallalGdldeAral 23
               al +LA +l ++G++d+A +l
  MMETSP0890-20130614|442_1 13 ALNDLALLLDLQGNYDQAKQL 33
               6779**************876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.67
               HH---HHHHHH CS
  PF07721.9  3 allaLAralla 13
                l +LA+ l++
  MMETSP0890-20130614|442_1 55 SLNNLAQSLHH 65
               5679***9986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   9.9e-05     0.096       1      32 [.      11      42 ..      11      45 .. 0.88
   2 ?   -1.2   0.0       2.1     2e+03       2       9 ..      54      61 ..      51      64 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.9e-05
               ---TTT---HHHHTT-HHHHHHHHH---HHHH CS
  PF13181.1  1 akayynlGdiYrqlGdydkAkeylekalelkp 32
               aka++ l++++   G+yd+Ak+  e+al + +
  MMETSP0890-20130614|442_1 11 AKALNDLALLLDLQGNYDQAKQLHERALRIRQ 42
               589999***************99999888866 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.1
               --TTT--- CS
  PF13181.1  2 kayynlGd 9 
               ++++nl++
  MMETSP0890-20130614|442_1 54 ESLNNLAQ 61
               34445544 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.11      41      74 ..      12      45 ..       6      63 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
  PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfilervf 74
                +L  l+ ++  qg++ +A +l eraL i ++ +
  MMETSP0890-20130614|442_1 12 KALNDLALLLDLQGNYDQAKQLHERALRIRQENL 45
               5788999********************8887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.54
# Mc/sec: 288.45
//
Query:       MMETSP0890-20130614|443_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-23   80.6   0.8    3.3e-15   55.2   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    3.4e-20   71.6   0.0      4e-20   71.4   0.0    1.2  1  PF13424.1  Tetratricopeptide repeat
    1.7e-14   52.6   3.4    7.6e-09   34.6   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    4.5e-13   47.9   2.3    1.1e-07   31.0   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.3e-12   47.0   0.4    2.9e-12   45.9   0.3    1.5  1  PF13414.1  TPR repeat
    5.3e-10   38.2   0.0    3.3e-05   23.2   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    6.6e-09   34.8   1.3      5e-05   22.6   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.6e-08   34.8   0.2    2.5e-08   34.2   0.1    1.4  1  PF13432.1  Tetratricopeptide repeat
    4.5e-07   29.8   0.1     0.0021   18.3   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    7.8e-07   28.7   1.4      4e-05   23.3   0.5    3.3  3  PF13431.1  Tetratricopeptide repeat
      2e-05   24.6   0.1      0.028   14.7   0.0    2.3  2  PF13174.1  Tetratricopeptide repeat
    2.2e-05   24.1   0.2       0.02   14.6   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    2.4e-05   24.2   0.0    3.9e-05   23.5   0.0    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.003   17.2   0.1        0.5   10.1   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
     0.0036   17.4   0.0       0.22   11.9   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.011   14.6   0.0    1.0  1  PF08631.5  Meiosis protein SPO22/ZIP4 like
      0.017   15.0   0.1        0.4   10.5   0.0    2.0  2  PF12688.2  Tetratrico peptide repeat
      0.037   13.1   0.0        2.6    7.2   0.0    2.2  2  PF10516.4  SHNi-TPR
       0.04   13.8   0.1      0.096   12.6   0.0    1.6  1  PF14346.1  Domain of unknown function (DUF4398)
      0.081   12.3   0.0          1    8.8   0.0    1.9  2  PF00177.16 Ribosomal protein S7p/S5e
       0.13   12.0   0.0       0.15   11.8   0.0    1.1  1  PF11846.3  Domain of unknown function (DUF3366)
       0.27   10.2   1.6       0.44    9.5   1.1    1.3  1  PF10525.4  Engrailed homeobox C-terminal signature domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   2.8e-08   1.7e-05      15      42 .]       2      29 ..       1      29 [. 0.96
   2 !   55.2   0.0   5.3e-18   3.3e-15       1      41 [.      30      70 .]      30      70 .] 0.99

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.8e-08
  PF13374.1 15 rgryeeAlaleeealairrrllGddHPd 42
               +g+y+eA +l+e+a +i ++++ ++HP+
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEILEEVHRPNHPE 29
               8**************************6 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 5.3e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
               +aa+lnnLAl+l+++g+y+eA +l+++a +i ++ lG++HP
  MMETSP0890-20130614|443_1 30 VAASLNNLALLLMNQGKYDEAKPLFQRAIEIGEKTLGPNHP 70
               8***************************************9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   6.4e-23     4e-20      18      77 ..       2      62 ..       1      70 [] 0.94

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 6.4e-23
  PF13424.1 18 lgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               +g+ydeA  lye+a+e+  ++++++hp++a +lnnla l++ +g+ydeA++++++A+ei e
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEIlEEVHRPNHPEVAASLNNLALLLMNQGKYDEAKPLFQRAIEIGE 62
               8****************6666689**********************************976 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2     1e-06   0.00062      14      30 ..       2      18 ..       1      21 [. 0.92
   2 !   34.6   0.1   1.2e-11   7.6e-09       1      30 [.      31      60 ..      31      63 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1e-06
                TT-HHHHHHHHHHHHHH CS
  PF00515.23 14 lgkydeAleyyekALel 30
                +gkydeA   ye+A+e+
   MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEI 18
                9***************9 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 1.2e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a +l+nl+++++++gkydeA   +++A+e+
   MMETSP0890-20130614|443_1 31 AASLNNLALLLMNQGKYDEAKPLFQRAIEI 60
                6789*************************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   5.3e-06    0.0033      14      30 ..       2      18 ..       1      21 [. 0.91
   2 !   31.0   0.1   1.8e-10   1.1e-07       1      30 [.      31      60 ..      31      63 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5.3e-06
                TT-HHHHHHHHHHHHHH CS
  PF07719.12 14 lgdyeeAleafekAlel 30
                +g+y+eA+ ++e+A+e+
   MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEI 18
                8**************98 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 1.8e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a  l+nl+l+++++g+y+eA+ +f++A+e+
   MMETSP0890-20130614|443_1 31 AASLNNLALLLMNQGKYDEAKPLFQRAIEI 60
                5689************************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.3   4.7e-15   2.9e-12      16      67 ..       2      60 ..       1      62 [. 0.90

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 4.7e-15
  PF13414.1 16 egdydeAieayekAlel.....dpnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               +g+ydeA  +ye+A+e+     +pn++e    ++nlAl+++++g +y+eA   +++A+e+
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEIleevhRPNHPEvaaSLNNLALLLMNQG-KYDEAKPLFQRAIEI 60
               89**************966555599988888*************.6************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   7.3e-05     0.045      12      29 ..       2      19 ..       1      29 [. 0.80
   2 !   23.2   0.0   5.2e-08   3.3e-05       1      31 [.      33      63 ..      33      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.3e-05
  PF13176.1 12 lgdyekAielyeraLalt 29
               +g+y++A  lyera+++ 
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEIL 19
               8************66554 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.2e-08
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
               +l+nLa l +++g+y++A  l++ra+++ + 
  MMETSP0890-20130614|443_1 33 SLNNLALLLMNQGKYDEAKPLFQRAIEIGEK 63
               79**********************8876655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00031      0.19      14      30 ..       2      18 ..       1      20 [. 0.93
   2 !   22.6   0.1     8e-08     5e-05       2      30 ..      32      60 ..      31      63 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00031
               TT-HHHHHHHHH---HH CS
  PF13181.1 14 lGdydkAkeylekalel 30
                G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEI 18
               69*************98 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 8e-08
               --TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
               ++++nl++++++ G+yd+Ak  +++a+e+
  MMETSP0890-20130614|443_1 32 ASLNNLALLLMNQGKYDEAKPLFQRAIEI 60
               679************************98 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1     4e-11   2.5e-08      10      63 ..       2      68 ..       1      70 [] 0.89

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 4e-11
  PF13432.1 10 aGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaPd 63
               +G+ydeA +++e+a++          Pe a  l +la +l+ +g++deA  l+++a+      l+P+
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEILeevhrpnhPEVAASLNNLALLLMNQGKYDEAKPLFQRAIeigekTLGPN 68
               8**********99999999*************************************96666655555 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0011      0.66      14      38 ..       2      31 ..       1      37 [. 0.78
   2 !   18.3   0.0   3.5e-06    0.0021       4      33 ..      34      63 ..      30      69 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0011
  PF13428.1 14 lGdpdeAiallrrala.....laPddaeal 38
               +G +deA  l++ra++     + P+++e+ 
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEileevHRPNHPEVA 31
               799999999999999866666677777765 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.5e-06
  PF13428.1  4 llalarallalGdpdeAiallrralalaPd 33
               l  la +l+++G +deA  l++ra++ + +
  MMETSP0890-20130614|443_1 34 LNNLALLLMNQGKYDEAKPLFQRAIEIGEK 63
               6689*********************97765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       2.2   1.4e+03      26      33 ..       2       9 ..       1      10 [. 0.86
   2 !   23.3   0.5   6.4e-08     4e-05       1      33 [.      11      51 ..      11      52 .. 0.82
   3 ?    1.0   0.0      0.89   5.5e+02       1       8 [.      53      60 ..      53      69 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 2.2
  PF13431.1 26 nGdleeAe 33
               +G+++eA+
  MMETSP0890-20130614|443_1  2 QGKYDEAK 9 
               89****96 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 6.4e-08
  PF13431.1  1 lyekalel.....dPnn...adaynnLAelllnnGdleeAe 33
               lye+a+e+      Pn+   a ++nnLA+ll n+G+++eA+
  MMETSP0890-20130614|443_1 11 LYERAIEIleevhRPNHpevAASLNNLALLLMNQGKYDEAK 51
               69999999765542666666*******************97 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.89
  PF13431.1  1 lyekalel 8 
               l+++a+e+
  MMETSP0890-20130614|443_1 53 LFQRAIEI 60
               699***97 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0064         4      13      28 ..       2      17 ..       1      22 [. 0.89
   2 !   14.7   0.0   4.5e-05     0.028       5      28 ..      36      59 ..      36      60 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0064
               HHHHHHHHHHHHHHHH CS
  PF13174.1 13 lgdtdeAlealerlik 28
               +g++deA+ ++er i+
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIE 17
               6899*******99986 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.5e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +lal++ ++g++deA+ +++r i+
  MMETSP0890-20130614|443_1 36 NLALLLMNQGKYDEAKPLFQRAIE 59
               69999****************997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.2e-05      0.02      18      38 ..       2      22 ..       1      34 [. 0.90
   2 !    8.3   0.0     0.003       1.9      17      34 ..      43      60 ..      27      65 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-05
                TT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlelLlqa 38
                +gky+eA  lY+ A+e+L+++
   MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEILEEV 22
                69****************986 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.003
                HTT-HHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlel 34
                ++gky+eA  l + A+e+
   MMETSP0890-20130614|443_1 43 NQGKYDEAKPLFQRAIEI 60
                677777777777777776 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.2e-08   3.9e-05       2      57 ..       2      64 ..       1      70 [] 0.72

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 6.2e-08
               TT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
  PF12895.2  2 qhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk.leldsss 57
               q+ y++A  l+e++++   +      p  +a+l +lAl l+++g+y++A  l+++  e+ +++
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEILEEvhrpnHPeVAASLNNLALLLMNQGKYDEAKPLFQRaIEIGEKT 64
               56777777777777777766665532347778888***************9999885544444 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.024        15      14      27 ..       2      13 ..       1      21 [. 0.82
   2 !   10.1   0.0   0.00081       0.5       7      25 ..      37      55 ..      33      62 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.024
               TT-HHHHHHH..HH CS
  PF07720.7 14 kkkyqeArelfsYa 27
               ++ky+eA  l  Y+
  MMETSP0890-20130614|443_1  2 QGKYDEAKPL--YE 13
               8******888..54 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00081
               HHHHHHHTT-HHHHHHH.. CS
  PF07720.7  7 lAaefynkkkyqeArelfs 25
               lA  + n++ky+eA  lf+
  MMETSP0890-20130614|443_1 37 LALLLMNQGKYDEAKPLFQ 55
               6777889*******99988 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.16        99      14      26 .]       2      14 ..       1      14 [. 0.90
   2 !   11.9   0.0   0.00035      0.22       2      26 .]      32      56 ..      31      56 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.16
               -------HHHHHT CS
  PF07721.9 14 lGdldeAraller 26
               +G +deA  l er
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYER 14
               8******999987 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00035
               HHH---HHHHHH-------HHHHHT CS
  PF07721.9  2 rallaLArallalGdldeAraller 26
               + l +LA +l  +G +deA  l++r
  MMETSP0890-20130614|443_1 32 ASLNNLALLLMNQGKYDEAKPLFQR 56
               67789**************988765 PP

>> PF08631.5  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.8e-05     0.011       6      68 ..       2      63 ..       1      70 [] 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.8e-05
  PF08631.5  6 egdldlAehllskakslknlldpdlteeLarvlyniGkellerktdfseavkwlkraldllek 68
               +g +d A+ l+++a   ++   + +  e a  l n ++ l+++  +++ea+ +++ra+++ ek
  MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEILEEVHRPNHPEVAASLNNLALLLMNQG-KYDEAKPLFQRAIEIGEK 63
               8999*********9999986666667889999************.**************9766 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00065       0.4      15      63 ..       3      56 ..       1      58 [. 0.59
   2 ?    5.0   0.0     0.035        22      14      31 ..      44      61 ..      38      66 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00065
  PF12688.2 15 GeeakAvplYrrAlaaGLagarrrr.....ati.qlaSsLRnlGrveeslallea 63
               G+ ++A plY+rA++  L++++r+      a +  la  L n G+ +e+  l+++
  MMETSP0890-20130614|443_1  3 GKYDEAKPLYERAIEI-LEEVHRPNhpevaASLnNLALLLMNQGKYDEAKPLFQR 56
               8899999***999975.66655543111112221345555566777777777665 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.035
  PF12688.2 14 tGeeakAvplYrrAlaaG 31
                G+ ++A pl++rA++ G
  MMETSP0890-20130614|443_1 44 QGKYDEAKPLFQRAIEIG 61
               588999999999999877 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0042       2.6      15      36 ..       3      24 ..       1      26 [. 0.88
   2 ?    4.1   0.0     0.039        24      14      37 ..      44      67 ..      41      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0042
  PF10516.4 15 EnFpqAveDlrkaLeLreqllp 36
               +++++A   +++a+e+ e+++ 
  MMETSP0890-20130614|443_1  3 GKYDEAKPLYERAIEILEEVHR 24
               789999999**********986 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.039
  PF10516.4 14 nEnFpqAveDlrkaLeLreqllpp 37
               ++++++A   +++a+e+ e++l p
  MMETSP0890-20130614|443_1 44 QGKYDEAKPLFQRAIEIGEKTLGP 67
               6799999999*******9998865 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015     0.096      18      72 ..       4      58 ..       1      64 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00015
  PF14346.1 18 eleeAeaalerAeaagaekyapveLeeAkekLaaAkaalaegkyeeArrlaeqAe 72
               +++eA+  +erA +   e + p++ e A +  + A  ++++gky+eA+ l ++A+
  MMETSP0890-20130614|443_1  4 KYDEAKPLYERAIEILEEVHRPNHPEVAASLNNLALLLMNQGKYDEAKPLFQRAI 58
               7889999999999999999889999999999999*******************97 PP

>> PF00177.16  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.15        92      32      54 ..       2      24 ..       1      32 [. 0.81
   2 ?    8.8   0.0    0.0016         1      21      52 ..      33      64 ..      22      69 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.15
                ---HHHHHHHHHHHHHHHHTT-- CS
  PF00177.16 32 dGkkslAekivykaleiiekktk 54
                +Gk   A+ ++++a+ei+e+  +
   MMETSP0890-20130614|443_1  2 QGKYDEAKPLYERAIEILEEVHR 24
                799***************98543 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0016
                HHHHH----S----HHHHHHHHHHHHHHHHTT CS
  PF00177.16 21 lveklinklmkdGkkslAekivykaleiiekk 52
                 ++ l   lm +Gk   A+ ++++a+ei ek+
   MMETSP0890-20130614|443_1 33 SLNNLALLLMNQGKYDEAKPLFQRAIEIGEKT 64
                57888899******************997776 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.15     127     170 ..      12      57 ..       2      63 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00023
  PF11846.3 127 laayleqalkllrdkP..rpavirrlalalallGkeeeArdamaea 170
                 ++++e ++++ r  +   +a +++lal+l+ +Gk +eA+ + ++a
  MMETSP0890-20130614|443_1  12 YERAIEILEEVHRPNHpeVAASLNNLALLLMNQGKYDEAKPLFQRA 57 
                3444444444443222444577999**************9877776 PP

>> PF10525.4  Engrailed homeobox C-terminal signature domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   0.00071      0.44       6      18 ..      35      47 ..      32      48 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00071
  PF10525.4  6 NtLAlqLMAQGLY 18
               N LAl LM QG Y
  MMETSP0890-20130614|443_1 35 NNLALLLMNQGKY 47
               99*********55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 270.56
//
Query:       MMETSP0890-20130614|444_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:01.29
# Mc/sec: 499.71
//
Query:       MMETSP0890-20130614|446_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-38  128.6   4.6    4.6e-26   90.4   0.2    2.0  2  PF13424.1  Tetratricopeptide repeat
      7e-31  105.0   9.0    6.7e-15   54.3   0.6    3.0  3  PF13374.1  Tetratricopeptide repeat
    2.5e-16   58.3   2.8    1.7e-07   30.3   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
      4e-15   55.0   8.3    2.2e-11   43.1   1.6    2.0  2  PF13414.1  TPR repeat
    1.4e-14   52.4   0.3      4e-07   29.2   0.2    2.1  2  PF13176.1  Tetratricopeptide repeat
      1e-13   49.9   3.1    1.1e-06   28.0   0.1    2.2  2  PF07719.12 Tetratricopeptide repeat
    2.5e-10   40.6   0.2    3.5e-10   40.1   0.1    1.3  1  PF13432.1  Tetratricopeptide repeat
    1.2e-09   37.1   1.2    8.3e-05   21.9   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.5e-09   37.5   1.2     0.0013   19.0   0.0    2.4  2  PF13428.1  Tetratricopeptide repeat
    4.4e-09   35.7   0.6    0.00017   21.5   0.5    2.3  2  PF07721.9  Tetratricopeptide repeat
    5.4e-08   32.3   5.1      0.005   16.8   0.1    3.5  3  PF13431.1  Tetratricopeptide repeat
    5.3e-06   26.4   0.2      0.021   15.1   0.0    2.6  2  PF13174.1  Tetratricopeptide repeat
    1.5e-05   24.5   0.1     0.0026   17.4   0.0    2.1  2  PF07720.7  Tetratricopeptide repeat
    0.00018   21.4   0.0    0.00024   21.0   0.0    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.016   15.1   0.2        2.4    8.1   0.1    2.1  2  PF12688.2  Tetratrico peptide repeat
      0.021   14.5   0.3        0.4   10.4   0.1    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.033   14.3   0.0       0.14   12.2   0.0    2.0  2  PF07554.8  Uncharacterised Sugar-binding Domain
       0.12   11.8   0.1       0.24   10.8   0.0    1.5  2  PF00637.15 Region in Clathrin and VPS
       0.23   11.7   1.1         21    5.5   0.0    2.5  3  PF14357.1  Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.2   6.4e-29   4.6e-26       1      77 [.       7      84 ..       7      85 .. 0.98
   2 !   45.8   0.3   5.2e-15   3.8e-12       1      46 [.      49      95 ..      49      96 .] 0.97

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 6.4e-29
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               hpdlat lnnlal+l+ +g+ydeA  l+e+a+e+  ++lg++hp++a+ lnnla l++a+g+ydeA++++e+A+ i++
  MMETSP0890-20130614|446_1  7 HPDLATRLNNLALLLKNQGNYDEAKPLFERAIEIgEKTLGPNHPNVATRLNNLAALLHAQGEYDEAEPLYERAIGIRK 84
               9***************************************************************************98 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 5.2e-15
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdta 46
               hp++at lnnla +l+++g+ydeA+ lye+a+ +  ++lg++hpd+a
  MMETSP0890-20130614|446_1 49 HPNVATRLNNLAALLHAQGEYDEAEPLYERAIGIrKEKLGRNHPDVA 95
               99********************************999********99 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.06        43      36      42 .]       3       9 ..       1       9 [. 0.89
   2 !   51.7   0.1     6e-17   4.3e-14       1      42 []      10      51 ..      10      51 .. 0.97
   3 !   54.3   0.6   9.4e-18   6.7e-15       1      42 []      52      93 ..      52      93 .. 0.98

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.06
  PF13374.1 36 lGddHPd 42
               lG++HPd
  MMETSP0890-20130614|446_1  3 LGPNHPD 9 
               8*****8 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 6e-17
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLAl+l ++g+y+eA +l+e+a +i ++ lG++HP+
  MMETSP0890-20130614|446_1 10 LATRLNNLALLLKNQGNYDEAKPLFERAIEIGEKTLGPNHPN 51
               6999*************************************5 PP

  == domain 3    score: 54.3 bits;  conditional E-value: 9.4e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +l+a+g+y+eA++l+e+a  ir++ lG++HPd
  MMETSP0890-20130614|446_1 52 VATRLNNLAALLHAQGEYDEAEPLYERAIGIRKEKLGRNHPD 93
               799**************************************8 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   2.4e-10   1.7e-07       4      30 ..      14      40 ..      11      43 .. 0.94
   2 !   28.7   0.2   8.3e-10   5.9e-07       4      30 ..      56      82 ..      53      85 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.4e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+nl++++ ++g+ydeA   +e+A+e+
   MMETSP0890-20130614|446_1 14 LNNLALLLKNQGNYDEAKPLFERAIEI 40
                89************************8 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 8.3e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+nl+++++ +g+ydeA+  ye+A+ +
   MMETSP0890-20130614|446_1 56 LNNLAALLHAQGEYDEAEPLYERAIGI 82
                89**********************976 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   1.6     3e-14   2.2e-11       2      67 ..      10      82 ..       9      84 .. 0.86
   2 !   21.4   0.3   1.8e-07   0.00013       2      34 ..      52      84 ..      51      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 3e-14
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               +A  l++l+  l ++g+ydeA  ++e+A+e+      pn+++    ++nlA+++  +g +y+eA   ye+A+ +
  MMETSP0890-20130614|446_1 10 LATRLNNLALLLKNQGNYDEAKPLFERAIEIGektlgPNHPNvatRLNNLAALLHAQG-EYDEAEPLYERAIGI 82
               57789*************************84444447777766699***********.6***********955 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.8e-07
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldp 34
               +A  l++l+  l  +g+ydeA+ +ye+A+ +++
  MMETSP0890-20130614|446_1 52 VATRLNNLAALLHAQGEYDEAEPLYERAIGIRK 84
               57789************************8763 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.7e-07   0.00012       2      31 ..      14      43 ..      14      50 .. 0.86
   2 !   29.2   0.2   5.5e-10     4e-07       2      35 ..      56      89 ..      56      90 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.7e-07
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkd 31
               l+nLa l  ++g+y++A  l+era+++ + 
  MMETSP0890-20130614|446_1 14 LNNLALLLKNQGNYDEAKPLFERAIEIGEK 43
               89*********************8776654 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 5.5e-10
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdplda 35
               l+nLa l  ++g+y++A+ lyera++++k+ l++
  MMETSP0890-20130614|446_1 56 LNNLAALLHAQGEYDEAEPLYERAIGIRKEKLGR 89
               89*********************99999988765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   1.5e-09   1.1e-06       4      30 ..      14      40 ..      11      43 .. 0.92
   2 !   22.6   0.3   7.5e-08   5.4e-05       4      28 ..      56      80 ..      53      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 1.5e-09
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                l+nl+l++ ++g+y+eA+ +fe+A+e+
   MMETSP0890-20130614|446_1 14 LNNLALLLKNQGNYDEAKPLFERAIEI 40
                89***********************97 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 7.5e-08
                HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAl 28
                l+nl+ ++ ++g+y+eA+ ++e+A+
   MMETSP0890-20130614|446_1 56 LNNLAALLHAQGEYDEAEPLYERAI 80
                89**********************8 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   4.9e-13   3.5e-10       3      59 ..      17      81 ..      15      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 4.9e-13
  PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
               lA++l ++G+ydeA +++e+a++          P  a  l +la +l+++g++deA+ l+++a++
  MMETSP0890-20130614|446_1 17 LALLLKNQGNYDEAKPLFERAIEIGektlgpnhPNVATRLNNLAALLHAQGEYDEAEPLYERAIG 81
               8999**************************99999***************************984 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.1e-07   8.3e-05       4      30 ..      14      40 ..      11      43 .. 0.94
   2 !   14.2   0.1   3.5e-05     0.025       4      32 ..      56      84 ..      53      86 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.1e-07
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl++++++ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|446_1 14 LNNLALLLKNQGNYDEAKPLFERAIEI 40
               78***********************98 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.5e-05
               TTT---HHHHTT-HHHHHHHHH---HHHH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
               ++nl+ ++   G+yd+A+  +e+a+ + +
  MMETSP0890-20130614|446_1 56 LNNLAALLHAQGEYDEAEPLYERAIGIRK 84
               689999******************98865 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-06    0.0013       6      39 ..      16      54 ..       9      57 .. 0.78
   2 !   17.7   0.4   4.9e-06    0.0035       6      28 ..      58      80 ..      52      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.8e-06
  PF13428.1  6 alarallalGdpdeAiallrrala.....laPddaeall 39
                la +l ++G++deA  l++ra++     l+P+++ + +
  MMETSP0890-20130614|446_1 16 NLALLLKNQGNYDEAKPLFERAIEigektLGPNHPNVAT 54
               79*********************9555555666666555 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 4.9e-06
  PF13428.1  6 alarallalGdpdeAiallrral 28
                la++l a+G++deA+ l++ra+
  MMETSP0890-20130614|446_1 58 NLAALLHAQGEYDEAEPLYERAI 80
               79*******************97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00023      0.16       5      26 .]      15      36 ..      11      36 .. 0.90
   2 !   21.5   0.5   2.3e-07   0.00017       5      26 .]      57      78 ..      53      78 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00023
               ---HHHHHH-------HHHHHT CS
  PF07721.9  5 laLArallalGdldeAraller 26
                +LA +l  +G++deA  l+er
  MMETSP0890-20130614|446_1 15 NNLALLLKNQGNYDEAKPLFER 36
               59**************999997 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.3e-07
               ---HHHHHH-------HHHHHT CS
  PF07721.9  5 laLArallalGdldeAraller 26
                +LA +l+a+G++deA+ l er
  MMETSP0890-20130614|446_1 57 NNLAALLHAQGEYDEAEPLYER 78
               59*****************997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   6.9e-06     0.005      16      33 ..      14      31 ..       3      32 .. 0.81
   2 !   15.6   0.3   1.6e-05     0.012       2      33 ..      34      73 ..      33      74 .. 0.75
   3 ?   -1.1   0.0       3.6   2.6e+03       1       6 [.      75      80 ..      75      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.9e-06
  PF13431.1 16 ynnLAelllnnGdleeAe 33
               +nnLA+ll+n+G+++eA+
  MMETSP0890-20130614|446_1 14 LNNLALLLKNQGNYDEAK 31
               78**************97 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.6e-05
  PF13431.1  2 yekaleld.....Pnnadayn...nLAelllnnGdleeAe 33
               +e+a+e+      Pn++++ +   nLA ll+++G+++eAe
  MMETSP0890-20130614|446_1 34 FERAIEIGektlgPNHPNVATrlnNLAALLHAQGEYDEAE 73
               677777744455577766666666***************7 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 3.6
  PF13431.1  1 lyekal 6 
               lye+a+
  MMETSP0890-20130614|446_1 75 LYERAI 80
               799999 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.9e-05     0.021       5      28 ..      16      39 ..      16      40 .. 0.94
   2 !    8.7   0.0    0.0033       2.4       6      27 ..      59      80 ..      58      81 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.9e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +lal+++++g++deA+ ++er i+
  MMETSP0890-20130614|446_1 16 NLALLLKNQGNYDEAKPLFERAIE 39
               699******************997 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0033
               HHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerli 27
               la ++ ++g++deA  ++er i
  MMETSP0890-20130614|446_1 59 LAALLHAQGEYDEAEPLYERAI 80
               666666777**********987 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.022        16      11      23 ..      21      33 ..      16      41 .. 0.78
   2 !   17.4   0.0   3.6e-06    0.0026       7      27 ..      59      77 ..      56      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.022
               HHHTT-HHHHHHH CS
  PF07720.7 11 fynkkkyqeArel 23
               + n+++y+eA  l
  MMETSP0890-20130614|446_1 21 LKNQGNYDEAKPL 33
               559*******666 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.6e-06
               HHHHHHHTT-HHHHHHH..HH CS
  PF07720.7  7 lAaefynkkkyqeArelfsYa 27
               lAa ++++++y+eA+ l  Y+
  MMETSP0890-20130614|446_1 59 LAALLHAQGEYDEAEPL--YE 77
               8****************..76 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.3e-07   0.00024      30      84 .]      16      79 ..       3      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.3e-07
               HHHHHHHH---HHHHHHHHHC......TSHCHCB..HHHHH.HHHHHHHHTT-HHHHCCCHHHH CS
  PF12895.2 30 alAlclylngeykrAyellrk......leldsss..lgcry.llArcllklgkydeAiavLeka 84
               +lAl l ++g+y++A  l+++      + l +++  +++r+  lA  l+++g+ydeA+ ++e+a
  MMETSP0890-20130614|446_1 16 NLALLLKNQGNYDEAKPLFERaieigeKTLGPNHpnVATRLnNLAALLHAQGEYDEAEPLYERA 79
               5799********9999999999999987777787444444445589999********9999975 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.026        18      14      31 ..      24      41 ..      16      49 .. 0.78
   2 ?    8.1   0.1    0.0033       2.4       8      28 ..      60      80 ..      53      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.026
  PF12688.2 14 tGeeakAvplYrrAlaaG 31
                G+ ++A pl++rA++ G
  MMETSP0890-20130614|446_1 24 QGNYDEAKPLFERAIEIG 41
               588888888988888876 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0033
  PF12688.2  8 agarDstGeeakAvplYrrAl 28
               a+     Ge ++A+plY+rA+
  MMETSP0890-20130614|446_1 60 AALLHAQGEYDEAEPLYERAI 80
               5666778************96 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0051       3.7       8      34 ..      14      40 ..       9      46 .. 0.73
   2 ?   10.4   0.1   0.00055       0.4       2      34 ..      27      82 ..      26      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0051
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF04212.13  8 likkAveaDeagkyeeAlelYkeAlel 34
                l + A+   ++g+y+eA  l + A+e+
   MMETSP0890-20130614|446_1 14 LNNLALLLKNQGNYDEAKPLFERAIEI 40
                556666677889999999998888886 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00055
                HHHHHHHHHHHHHHHHTT.......................-HHHHHHHHHHHHHH CS
  PF04212.13  2 lskAlelikkAveaDeag.......................kyeeAlelYkeAlel 34
                +++A++l+ +A+e++e+                        +y+eA  lY+ A+++
   MMETSP0890-20130614|446_1 27 YDEAKPLFERAIEIGEKTlgpnhpnvatrlnnlaallhaqgEYDEAEPLYERAIGI 82
                78999***********8888999999999999999999999************986 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.14       7      46 ..      21      53 ..      14      61 .. 0.81
   2 ?   -0.3   0.0       1.7   1.2e+03      17      27 ..      62      72 ..      56      73 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0002
               CCCCHHHHTC-HHHHHHHHHHHHHHHHHH...TSTTTTCC CS
  PF07554.8  7 lkassnysnadtekknaynnAitaAkaiLnntngpnatqe 46
               lk   ny    +e+k +++ Ai++ +++L ++    ++++
  MMETSP0890-20130614|446_1 21 LKNQGNY----DEAKPLFERAIEIGEKTLGPNH---PNVA 53
               5666677....******************8866...5543 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.7
               -HHHHHHHHHH CS
  PF07554.8 17 dtekknaynnA 27
                 +++ +y++A
  MMETSP0890-20130614|446_1 62 LLHAQGEYDEA 72
               56889999998 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.3   9.6e+02      39      54 ..       5      20 ..       3      24 .. 0.78
   2 ?   10.8   0.0   0.00033      0.24      16      55 ..      20      63 ..      11      78 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.3
                S--HHHHHHHHHHHHH CS
  PF00637.15 39 renpavqtallelyak 54
                +++p++ t+l+ l++ 
   MMETSP0890-20130614|446_1  5 PNHPDLATRLNNLALL 20
                5899999999999875 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00033
                HHHTTT-GGGGTGGGTS--...-S....--HHHHHHHHHHHHHT CS
  PF00637.15 16 lfekaglleelieyLekvlketsr....enpavqtallelyaky 55
                l++++g+++e +++ e +++ +++    ++p+v t+l+ l+a  
   MMETSP0890-20130614|446_1 20 LLKNQGNYDEAKPLFERAIEIGEKtlgpNHPNVATRLNNLAALL 63
                67889**************777777778************9865 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.046        33      65      84 ..       6      25 ..       3      26 .. 0.91
   2 ?    5.5   0.0     0.029        21      64      82 ..      47      65 ..      22      68 .. 0.77
   3 ?    0.3   0.0       1.2   8.3e+02      42      70 ..      66      95 ..      58      96 .] 0.61

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.046
  PF14357.1 65 eHPklagtlrnildsLanmG 84
               +HP+la  l+n++  L+n G
  MMETSP0890-20130614|446_1  6 NHPDLATRLNNLALLLKNQG 25
               7*************999865 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.029
  PF14357.1 64 aeHPklagtlrnildsLan 82
                +HP++a  l+n++  L+ 
  MMETSP0890-20130614|446_1 47 PNHPNVATRLNNLAALLHA 65
               58***********999975 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.2
  PF14357.1 42 daseaedeslaerlne.averFeaeHPkla 70
               + + +e e+l er      e+  ++HP++a
  MMETSP0890-20130614|446_1 66 QGEYDEAEPLYERAIGiRKEKLGRNHPDVA 95
               445555566666655546678888999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:01.09
# Mc/sec: 211.06
//
Query:       MMETSP0890-20130614|451_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-16   58.2   6.2    1.7e-15   56.1   0.0    2.3  3  PF13374.1  Tetratricopeptide repeat
    6.4e-16   57.9   0.0    7.4e-16   57.7   0.0    1.1  1  PF13424.1  Tetratricopeptide repeat
    2.8e-07   29.7   0.4    6.3e-07   28.6   0.1    1.6  2  PF00515.23 Tetratricopeptide repeat
    2.2e-06   26.9   0.1    8.2e-06   25.1   0.0    1.8  2  PF13176.1  Tetratricopeptide repeat
    2.4e-06   26.9   0.1    5.2e-06   25.9   0.1    1.4  1  PF13414.1  TPR repeat
    3.6e-05   23.5   1.6     0.0071   16.3   0.2    2.6  2  PF13431.1  Tetratricopeptide repeat
    8.5e-05   22.0   0.1    0.00016   21.1   0.0    1.5  2  PF07719.12 Tetratricopeptide repeat
     0.0011   19.2   0.0     0.0014   18.9   0.0    1.3  1  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.012   16.1   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
      0.022   15.0   0.2        1.2    9.4   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
      0.028   14.0   0.0      0.042   13.5   0.0    1.2  1  PF13181.1  Tetratricopeptide repeat
      0.049   13.3   0.0      0.058   13.1   0.0    1.1  1  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.4       9.8   1.1e+04      39      42 .]       2       5 ..       2       5 .. 0.88
   2 !   56.1   0.0   1.5e-18   1.7e-15       1      42 []       6      47 ..       6      47 .. 0.98
   3 !    6.0   0.1     0.009        10       1      14 [.      48      61 ..      48      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 9.8
  PF13374.1 39 dHPd 42
               +HPd
  MMETSP0890-20130614|451_1  2 NHPD 5 
               8**8 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 1.5e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a++lnnLA +l ++g+ ++A +l+e+a +i+++++G++HP+
  MMETSP0890-20130614|451_1  6 VATTLNNLAALLENQGKNDDAMPLYERAIEIWEKVHGPNHPH 47
               89***************************************6 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.009
  PF13374.1  1 taaalnnLAlalra 14
               +a+ lnnLA +l +
  MMETSP0890-20130614|451_1 48 VATGLNNLAGLLDE 61
               6889*****99976 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   6.5e-19   7.4e-16       1      59 [.       3      62 ..       3      63 .] 0.96

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 6.5e-19
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylal 59
               hpd+at+lnnla +l+ +g+ d+A  lye+a+e+  +++g++hp +a+ lnnla l+ ++
  MMETSP0890-20130614|451_1  3 HPDVATTLNNLAALLENQGKNDDAMPLYERAIEIwEKVHGPNHPHVATGLNNLAGLLDEQ 62
               9*********************************88889***************998876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   5.5e-10   6.3e-07       1      31 [.       7      37 ..       7      39 .. 0.93
   2 ?   -1.2   0.0       1.4   1.6e+03       2      10 ..      50      58 ..      49      62 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 5.5e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a +l+nl++++ ++gk d+A   ye+A+e+ 
   MMETSP0890-20130614|451_1  7 ATTLNNLAALLENQGKNDDAMPLYERAIEIW 37
                5689*************************95 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.4
                HHHHHHHHH CS
  PF00515.23  2 kalynlGna 10
                  l+nl+ +
   MMETSP0890-20130614|451_1 50 TGLNNLAGL 58
                578999855 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   7.2e-09   8.2e-06       1      32 [.       9      40 ..       9      44 .. 0.88
   2 ?   -0.7   0.0       1.3   1.5e+03       2      10 ..      52      60 ..      52      62 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7.2e-09
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdp 32
               +l+nLa l +++g+ ++A  lyera+++++  
  MMETSP0890-20130614|451_1  9 TLNNLAALLENQGKNDDAMPLYERAIEIWEKV 40
               79**********************88887665 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.3
  PF13176.1  2 llnLarlys 10
               l+nLa l  
  MMETSP0890-20130614|451_1 52 LNNLAGLLD 60
               799998865 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   4.5e-09   5.2e-06       2      44 ..       6      56 ..       5      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.5e-09
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlA 44
               +A +l++l+  l ++g+ d+A  +ye+A+e++     pn++     ++nlA
  MMETSP0890-20130614|451_1  6 VATTLNNLAALLENQGKNDDAMPLYERAIEIWekvhgPNHPHvatGLNNLA 56
               68899**************************87788866644444999998 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   6.2e-06    0.0071       8      32 ..       2      26 ..       1      27 [. 0.93
   2 ?    6.0   0.0     0.012        14       1      19 [.      29      55 ..      29      62 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.2e-06
  PF13431.1  8 ldPnnadaynnLAelllnnGdleeA 32
               ++P+ a  +nnLA ll n+G+ ++A
  MMETSP0890-20130614|451_1  2 NHPDVATTLNNLAALLENQGKNDDA 26
               58999******************98 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.012
  PF13431.1  1 lyekaleld.....Pnn...adaynnL 19
               lye+a+e+      Pn+   a  +nnL
  MMETSP0890-20130614|451_1 29 LYERAIEIWekvhgPNHphvATGLNNL 55
               79*****97455555554445555555 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07   0.00016       2      30 ..       8      36 ..       7      36 .. 0.94
   2 ?   -2.2   0.0       4.2   4.8e+03       3      10 ..      51      58 ..      49      62 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.4e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  l+nl+ +++++g+ ++A  ++e+A+e+
   MMETSP0890-20130614|451_1  8 TTLNNLAALLENQGKNDDAMPLYERAIEI 36
                679************************96 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.2
                HHHHHHHH CS
  PF07719.12  3 alynlGla 10
                +l+nl+ +
   MMETSP0890-20130614|451_1 51 GLNNLAGL 58
                67888755 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-06    0.0014       3      35 ..       9      46 ..       6      58 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.3e-06
  PF13428.1  3 allalarallalGdpdeAiallrrala.....laPdda 35
               +l  la++l+++G  d+A+ l++ra++     ++P+++
  MMETSP0890-20130614|451_1  9 TLNNLAALLENQGKNDDAMPLYERAIEiwekvHGPNHP 46
               5678**********************966666455554 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   0.0     1e-05     0.012       2      30 ..      12      45 ..       2      62 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1e-05
  PF13432.1  2 alArallraGdydeAlaaleaalala.....Pea 30
                lA +l ++G+ d+A +++e+a++ +     P +
  MMETSP0890-20130614|451_1 12 NLAALLENQGKNDDAMPLYERAIEIWekvhgPNH 45
               4677777777777777777777777776666333 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0011       1.2      65      84 ..       2      21 ..       1      22 [. 0.91
   2 ?    4.8   0.0      0.03        34      65      80 ..      44      59 ..      18      61 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0011
  PF14357.1 65 eHPklagtlrnildsLanmG 84
               +HP++a tl+n++  L n G
  MMETSP0890-20130614|451_1  2 NHPDVATTLNNLAALLENQG 21
               7***************9866 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.03
  PF14357.1 65 eHPklagtlrnildsL 80
               +HP++a  l+n++  L
  MMETSP0890-20130614|451_1 44 NHPHVATGLNNLAGLL 59
               7********9998777 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.7e-05     0.042       3      30 ..       9      36 ..       7      36 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.7e-05
               -TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
               +++nl+ ++++ G+ d A+  +e+a+e+
  MMETSP0890-20130614|451_1  9 TLNNLAALLENQGKNDDAMPLYERAIEI 36
               799***********************97 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-05     0.058       9      38 ..      11      40 ..       5      45 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.1e-05
                HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13  9 ikkAveaDeagkyeeAlelYkeAlelLlqa 38
                 + A   +++gk ++A  lY+ A+e+++++
   MMETSP0890-20130614|451_1 11 NNLAALLENQGKNDDAMPLYERAIEIWEKV 40
                5668889*******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.84
# Mc/sec: 179.73
//
Query:       MMETSP0890-20130614|447_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.9   1.1       0.49   10.3   0.1    2.1  2  PF09067.5 Erythropoietin receptor, ligand binding


Domain annotation for each model (and alignments):
>> PF09067.5  Erythropoietin receptor, ligand binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.058     8e+02      41      70 ..      19      46 ..      12      76 .. 0.74
   2 ?   10.3   0.1   3.6e-05      0.49      23      65 ..     160     203 ..     135     213 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.058
               EEEEESSSS--EEE--EEEE-----EEEEE CS
  PF09067.5 41 sllYalenekvkeCplssqsaeestllfiC 70
               +l Y   +  + eC++++++  ++  l +C
  MMETSP0890-20130614|447_1 19 RLRYDNYGFPTIECRMEQRQELNK--LCVC 46
               566776667777888888888777..4444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.6e-05
                -EEEEEEE---------EEEEEESSSS--EE..E--EEEE----- CS
  PF09067.5  23 dftCfweeeeekalstdysllYalenekvke..Cplssqsaeest 65 
                 + Cf+ +eee++ + d sl+Y+ ++e+  +  C+  +q+  +++
  MMETSP0890-20130614|447_1 160 QLSCFYLPEEEAK-GGDSSLVYNRQKEEFARllCDFAHQRHPSQQ 203
                699*****99999.677******9997655334888887765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 693.00
//
Query:       MMETSP0890-20130614|454_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-27   97.2   0.0    6.1e-27   94.6   0.0    1.8  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   4.5e-31   6.1e-27       4     153 ..       8     143 ..       5     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 4.5e-31
                 XXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT--------------....----S--TT--..STT.-------S-TT.THHHH---HHHHHHHHTT------------------------.-----------STTT----TTTTT----- CS
  PF00504.16   4 eldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltk....lsaaskfaelpa.wae.agglslptllalqillligflelareqelkapesegsekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvv 153
                 el g ++++ g fDp+glskd    t++++reaE++HGRvA lav+G++vpe+  k    ++   kfa++p+ +a+ ++   +p+l+++q+++lig++ ++                     + f+ +g+    +ee+++ kl E+++GRlAM+a+l ++ 
   MMETSP0890-20130614|454_1   8 EL-G-VIAPTGfFDPFGLSKDIdaeTFAQYREAEIKHGRVAQLAVIGYIVPEVY-KfpgeIAPGLKFADIPNgVAAiDK---IPSLGWAQMFFLIGAVDYYGF-------------------FKFEEIGVPdLAPEELETRKLQELQHGRLAMLAVLELLR 143
                 55.5.88999*********99999****************************76.536663334566666665443334...******************733...................335555555567**********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:01.63
# Mc/sec: 249.93
//
Query:       MMETSP0890-20130614|455_1  [L=1100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-10   39.2   0.0    1.8e-09   37.8   0.0    1.8  1  PF13426.1  PAS domain
  ------ inclusion threshold ------
      0.019   14.7   8.8      0.063   13.1   6.1    1.9  1  PF00170.16 bZIP transcription factor


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   2.6e-13   1.8e-09       8      89 ..     854     938 ..     847     957 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 2.6e-13
  PF13426.1   8 dpd..gtilfaNeaalrllGytr.eevlgksirdlfpededeeavalleraleaggevevelelrrkdgeefpvevtvtpvrded 89 
                +++  ++i+ +N+a+++++G +r e+v+g+++r ++++ +dee v++l  ++++g+ +++ l+++r +ge+f + ++v+p++++d
  MMETSP0890-20130614|455_1 854 SATrpHVIENCNTAWMDMCGIQRkEDVVGHTLRCIQGDLTDEERVSELHYHIANGRAADALLVNYRLSGEPFLNYLRVFPLFSND 938
                4445599**************9868********************************************************9875 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   6.1   9.2e-06     0.063      10      42 ..     603     635 ..     597     647 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00170.16  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                 +++NRe Ar  R+RKka + +L++ v++L+a+ 
   MMETSP0890-20130614|455_1 603 RERNREHARNTRLRKKAALINLKDTVEKLTAKC 635
                 89****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.45u 0.46s 00:00:01.91 Elapsed: 00:00:01.27
# Mc/sec: 2075.58
//
Query:       MMETSP0890-20130614|458_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-11   41.4   0.0    2.2e-10   40.2   0.0    1.7  1  PF03469.9  XH domain
  ------ inclusion threshold ------
      0.045   12.8   2.5      0.081   11.9   1.7    1.4  1  PF02601.10 Exonuclease VII, large subunit
       0.54    9.5  12.3        6.9    5.9   0.1    2.6  2  PF12240.3  Angiomotin C terminal
        7.4    6.4   8.3        1.9    8.2   2.5    2.6  2  PF12052.3  Voltage gated calcium channel subunit beta domain 4Aa N terminal


Domain annotation for each model (and alignments):
>> PF03469.9  XH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   6.4e-14   2.2e-10      32     112 ..     233     315 ..     213     334 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 6.4e-14
  PF03469.9  32 cslweeeikdpdwqpfkvve..sgeeekevvdeddekLkkLkeelGeevynavkkalleineynasgrYvtpelWnfkekrka 112
                +s+ +e+i++pd +  k +    g+  k+v+d++  +L +L  ++G+ v  +v++ +le++ +n+sgrY +p +Wn   + + 
  MMETSP0890-20130614|458_1 233 ISALQERIRNPDFHITKIILdeRGNMPKQVIDYNHPELVALHFDFGQVVIDEVVRCFLELDTWNPSGRYHVPLPWNVHTDSEL 315
                467899*****9887766544499999*************************************************9887665 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.7   2.4e-05     0.081     132     282 ..      34     174 ..      20     236 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.4e-05
  PF02601.10 132 aTPtkaaelivpnkeelkeklknleqrlsralksklekekaklnllknrltlksrrkplskleqeeerleelkerlek....sleqllqskesqleklnaslaknnpdyklnkklekitllkneldselssaesklrileeklkalspeklLerG 282
                 +TP +a+ l+vp  ++ k +  +++ rl+ al++++e++ +kl+ +  +  + +r       e++e   +  +++l+k    +l + ++s++++++ ++a++a+ n+    ++k++k+      +d++ +     +++l+ekl+  +  + Le  
   MMETSP0890-20130614|458_1  34 STPQEAKMLVVPVTSTPKLEGREAAWRLQYALANEVETTCEKLRAAFLSRLSRER-------EEHEALWTTKENTLIKelelRLFEATESAKAKFAAFEAKQALINVAATGENKSSKKVPCGSGQDINPE-----IERLKEKLAEKE--AELELA 174
                 7******************************************998877766663.......44444444444444444444778888888899999988888888888888888666666666666664.....444444443332..233333 PP

>> PF12240.3  Angiomotin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.6    0.0046        16      38     162 ..      57     174 ..      50     208 .. 0.76
   2 ?    5.9   0.1     0.002       6.9     157     201 ..     319     363 ..     311     367 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0046
  PF12240.3  38 kslraqqrqaqssgassssynasaLkeqlREkeeriLaLEAditkwEqkyLEEstmRqf.Aldaa.at.aaaqrdttiinhspqesidsslkeeeellaanrrvqelesrikaleaqilEkDavikvl 162
                 + r q   a++ +++ +++ a+ L++  RE+ee+    EA  t  E   + E  +R f A + a a+ aa +  +++in + + + +ss     +++ +    q+++  i  l+ +++Ek+a + + 
  MMETSP0890-20130614|458_1  57 AAWRLQYALANEVETTCEKLRAAFLSRLSREREEH----EALWTTKENTLIKELELRLFeATESAkAKfAAFEAKQALINVAATGENKSSK----KVPCG--SGQDINPEIERLKEKLAEKEAELELA 174
                47899****************************97....999***************995444431332677888999*999999985554....66665..57999999***********9977654 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.002
  PF12240.3 157 avikvlqqrsrkeqgkkeegslrpaksvpsisaattsglkaksks 201
                 +i+ l q++ + q++++ + l p +s +s ++a+++ +++ +++
  MMETSP0890-20130614|458_1 319 DIISKLAQQNTEHQSTEHCSNLPPPSSFSSAASAGGTDVRSSGTT 363
                6899999***************************99999988766 PP

>> PF12052.3  Voltage gated calcium channel subunit beta domain 4Aa N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.5   0.00057       1.9      27      41 ..     183     197 ..     181     198 .. 0.93
   2 ?   -3.3   0.1       2.2   7.6e+03      24      33 ..     369     378 ..     366     379 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00057
  PF12052.3  27 ErerQAavQLerAkv 41 
                E+erQA++ L rA+ 
  MMETSP0890-20130614|458_1 183 EAERQAQARLSRARQ 197
                9************97 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.2
  PF12052.3  24 lRrErerQAa 33 
                +Rr+r+r A+
  MMETSP0890-20130614|458_1 369 SRRNRNRIAT 378
                8999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.64
# Mc/sec: 1707.40
//
Query:       MMETSP0890-20130614|457_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   17.0   0.0     0.0029   15.8   0.0    1.6  1  PF02480.11 Alphaherpesvirus glycoprotein E
     0.0032   17.3   0.9     0.0032   17.3   0.6    3.0  2  PF12734.2  Cysteine-rich TM module stress tolerance
     0.0081   15.5   1.5      0.017   14.5   1.0    1.5  1  PF02439.10 Adenovirus E3 region protein CR2
  ------ inclusion threshold ------
      0.046   12.7   0.0       0.07   12.1   0.0    1.1  1  PF00450.17 Serine carboxypeptidase
       0.11   12.5   0.2       0.11   12.5   0.1    4.5  4  PF13908.1  Wnt and FGF inhibitory regulator


Domain annotation for each model (and alignments):
>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0029     322     411 ..     492     583 ..     471     590 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
  PF02480.11 322 aaadseesdppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye....krlspfspvYtsLPtnelvedvsed 411
                 ++ ++++s+ p+ +++   ++k++++++ +ll  ++v+++++ l  +ll+++ c  k+r+rk +e      +s++ +  + LP+ e+ ++v+++
   MMETSP0890-20130614|457_1 492 TDIEPPTSPTPPVDTTGGGSKKKSSGPDAGLLAGIIVACIVGFL--ILLCCCWCYVKQRERKMTErkdsWDISTMFTDEANLPEAEEHVEVEDE 583
                 45555555556666666555656656666655555554444444..334444444444444444433443445555555678888886666554 PP

>> PF12734.2  Cysteine-rich TM module stress tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.4       1.8   4.9e+03      26      33 ..      16      23 ..      15      25 .. 0.82
   2 !   17.3   0.6   1.2e-06    0.0032       7      32 ..     500     543 ..     477     544 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.8
  PF12734.2 26 ALCCCcll 33
                LC+C +l
  MMETSP0890-20130614|457_1 16 TLCICICL 23
               69999997 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.2e-06
  PF12734.2   7 pqqpppqrresg...................fleGCLaALCCCcl 32 
                p+ pp+ ++++g                   ++ G L  LCCC++
  MMETSP0890-20130614|457_1 500 PT-PPVDTTGGGskkkssgpdagllagiivaCIVGFLILLCCCWC 543
                33.44444444456788888899*********************9 PP

>> PF02439.10  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.0   6.4e-06     0.017       5      27 ..     523     545 ..     520     556 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.4e-06
  PF02439.10   5 tiaIivaVvvGlaiIiicmlyYa 27 
                 + +Iiva +vG++i+  c  +Y+
   MMETSP0890-20130614|457_1 523 LAGIIVACIVGFLILLCCCWCYV 545
                 669******************97 PP

>> PF00450.17  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.5e-05      0.07      88     117 ..     276     306 ..     273     321 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
                 EEEE--STT----B------....STTT--- CS
  PF00450.17  88 vlfldqPvgvGFSysntssd.yktddeetae 117
                 v+fld P+++GFS s++  + ++t+ e++ae
   MMETSP0890-20130614|457_1 276 VVFLDTPAEAGFSSSDQAVEvMETQVEDAAE 306
                 89***************99966666666665 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.8   5.1         5   1.4e+04     177     177 ..     146     146 ..      66     208 .. 0.55
   2 ?   -6.2   7.0         5   1.4e+04     132     168 ..     350     396 ..     340     409 .. 0.42
   3 ?   -9.4   9.3         5   1.4e+04     135     169 ..     415     457 ..     391     490 .. 0.48
   4 ?   12.5   0.1   3.9e-05      0.11      78     120 ..     520     560 ..     489     585 .. 0.70

  Alignments for each domain:
  == domain 1    score: -6.8 bits;  conditional E-value: 5
  PF13908.1 177 p 177
                 
  MMETSP0890-20130614|457_1 146 S 146
                1 PP

  == domain 2    score: -6.2 bits;  conditional E-value: 5
  PF13908.1 132 eeskapsy.pqpqsqgyetpppqga.........qaaapyslalpep 168
                + s++ps+ p+p+s+  +t++p+++         +  +p+++a+p p
  MMETSP0890-20130614|457_1 350 PVSQPPSAsPAPSSSPEPTSSPAPSvtgkptssaPTGSPVPTATPIP 396
                33332222233333333333333331111111124444455555544 PP

  == domain 3    score: -9.4 bits;  conditional E-value: 5
  PF13908.1 135 k....apsypqpqsqgyetpppqga....qaaapyslalpepy 169
                +    ++s p+p+s+ ++t +p++     +   p+++  p+p 
  MMETSP0890-20130614|457_1 415 TatpiPTSSPAPTSSPAPTGSPAPTgspvPTVTPIPTFSPAPT 457
                2222233334333333333333333222222222222222222 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 3.9e-05
  PF13908.1  78 vvlivsiilivvfivvliviftcskcvlekavrrqrpvvtsas 120
                + l  +i  iv+ iv++ + ++c+ c  +  +r+ ++   s  
  MMETSP0890-20130614|457_1 520 AGLLAGI--IVACIVGFLILLCCCWCYVKQRERKMTERKDSWD 560
                5677777..4599999999999999988777777766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.36u 0.38s 00:00:01.74 Elapsed: 00:00:00.92
# Mc/sec: 1625.36
//
Query:       MMETSP0890-20130614|462_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-19   67.5  17.2    8.2e-06   25.4   2.2    6.0  5  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.077   12.5   0.1       0.24   10.9   0.1    1.8  1  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   6.4e-05      0.44      12      38 ..       2      29 ..       1      30 [. 0.93
   2 !    4.3   0.1    0.0052        35      12      37 ..      46      70 ..      39      70 .. 0.85
   3 !   25.4   2.2   1.2e-09   8.2e-06       5      39 .]      78     112 ..      74     112 .. 0.95
   4 !   21.0   0.0   2.9e-08    0.0002       2      39 .]     235     271 ..     234     271 .. 0.94
   5 !   11.7   0.4   2.4e-05      0.16      12      30 ..     287     305 ..     286     306 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.4e-05
                SSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27 12 spVtcvafspd.gpllasgSrDgtirlW 38
                ++V+++ f+p   + l+ +S+Dg++rl+
   MMETSP0890-20130614|462_1  2 DGVSDLLFNPKnDRELLASSWDGSVRLY 29
                6799999*******************97 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0052
                SSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27 12 spVtcvafspdgpllasgSrDgtirl 37
                 pV ++a+ +  +  ++gS Dg++rl
   MMETSP0890-20130614|462_1 46 VPVLSCAWYDG-KDGICGSVDGSVRL 70
                68899999999.88899*******97 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 1.2e-09
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++l  H+++V+ v+ s+  +++ sgS+D+++ +Wd
   MMETSP0890-20130614|462_1  78 SILGTHSAGVRRVCTSQKTNCIYSGSWDRSVSVWD 112
                 6899******************************9 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 2.9e-08
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +c +  +g   pV+++af+p    +asg+ D+ + +Wd
   MMETSP0890-20130614|462_1 235 KCHRDNQGIVYPVNALAFHPL-GSFASGGTDKRVNMWD 271
                 68888899999**********.***************9 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 2.4e-05
                 SSEEEEEEESSSTEEEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgS 30 
                 s++++++fsp+g++la +S
   MMETSP0890-20130614|462_1 287 SSISALSFSPNGSYLAIAS 305
                 78***************99 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.5e-05      0.24      12      30 ..     290     308 ..     281     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.5e-05
                EEEEE-----EEEEEE-BT CS
  PF07676.7  12 gePawSPDGkkivFtSnRg 30 
                 + ++SP+G++++ +S+ +
  MMETSP0890-20130614|462_1 290 SALSFSPNGSYLAIASSYN 308
                5669************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.64
# Mc/sec: 1329.23
//
Query:       MMETSP0890-20130614|460_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    9.1   6.1       0.14   12.0   0.6    2.0  2  PF00095.16 WAP-type (Whey Acidic Protein) 'four-disulfide core'


Domain annotation for each model (and alignments):
>> PF00095.16  WAP-type (Whey Acidic Protein) 'four-disulfide core'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.14     2e+03      21      27 ..     229     235 ..     227     237 .. 0.81
   2 ?   12.0   0.6     1e-05      0.14      10      31 ..     312     333 ..     303     334 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.14
  PF00095.16  21 sDsdCpg 27 
                 sDsdC +
   MMETSP0890-20130614|460_1 229 SDSDCTD 235
                 8****86 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1e-05
  PF00095.16  10 sdsvecadeCksDsdCpgeqKC 31 
                 +++ +  ++C+ DsdCp +q C
   MMETSP0890-20130614|460_1 312 ETAAPTGQNCRYDSDCPPGQSC 333
                 44555569**********9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.72
# Mc/sec: 1181.54
//
Query:       MMETSP0890-20130614|465_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-23   80.8   2.9    4.1e-16   58.1   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    1.3e-19   69.8   0.0    1.8e-19   69.3   0.0    1.3  1  PF13424.1  Tetratricopeptide repeat
      3e-10   39.1   2.6      3e-07   29.6   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    9.7e-10   37.8   0.4    1.3e-09   37.4   0.2    1.3  1  PF13414.1  TPR repeat
    1.4e-08   33.7   0.1    7.4e-07   28.3   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.8e-08   33.5   0.7    1.3e-06   27.7   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    3.7e-07   29.7   3.6       0.02   14.9   0.2    2.7  2  PF13431.1  Tetratricopeptide repeat
    6.6e-07   29.7   0.4     0.0045   17.5   0.0    1.9  2  PF13432.1  Tetratricopeptide repeat
    0.00026   21.2   0.0    0.00044   20.5   0.0    1.5  1  PF13428.1  Tetratricopeptide repeat
    0.00063   19.2   0.6      0.005   16.3   0.1    2.0  2  PF13181.1  Tetratricopeptide repeat
     0.0029   16.5   0.0     0.0031   16.4   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25
     0.0033   17.6   0.1       0.62   10.3   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
  ------ inclusion threshold ------
      0.051   13.6   0.0       0.06   13.3   0.0    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.056   13.2   0.0      0.067   12.9   0.0    1.3  1  PF04212.13 MIT (microtubule interacting and transport) domain
      0.079   12.8   0.0      0.099   12.5   0.0    1.3  1  PF12688.2  Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0048       4.4      33      42 .]       3      12 ..       2      12 .. 0.90
   2 !   58.1   0.0   4.5e-19   4.1e-16       1      41 [.      13      53 ..      13      54 .. 0.98
   3 !   15.3   0.0   1.3e-05     0.012       1      18 [.      55      72 ..      55      73 .] 0.94

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0048
  PF13374.1 33 rrllGddHPd 42
               ++ lG++HPd
  MMETSP0890-20130614|465_1  3 EKTLGPNHPD 12
               6899*****8 PP

  == domain 2    score: 58.1 bits;  conditional E-value: 4.5e-19
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
               +a+ lnnLA +l ++g+y+eA +l+e+al i++++lG++HP
  MMETSP0890-20130614|465_1 13 LATWLNNLAGLLKNQGKYDEAMPLYERALRICEEVLGPNHP 53
               699*************************************9 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 1.3e-05
  PF13374.1  1 taaalnnLAlalrargry 18
               +a++lnnLA++l ++++y
  MMETSP0890-20130614|465_1 55 VASTLNNLAVLLKNQKKY 72
               79*************998 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0     2e-22   1.8e-19       1      62 [.      10      72 ..       3      73 .] 0.97

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 2e-22
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdy 62
               hpdlat lnnla++l+ +g+ydeA  lye+al +  ++lg++hp +a++lnnla l+  +++y
  MMETSP0890-20130614|465_1 10 HPDLATWLNNLAGLLKNQGKYDEAMPLYERALRIcEEVLGPNHPKVASTLNNLAVLLKNQKKY 72
               9*********************************88899********************9998 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.2   3.2e-10     3e-07       3      32 ..      16      45 ..      14      46 .. 0.92
   2 !    9.9   0.1   0.00055       0.5       1      17 [.      56      72 ..      56      73 .] 0.92

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 3.2e-10
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALelnP 32
                 l+nl+ ++ ++gkydeA   ye+AL++ +
   MMETSP0890-20130614|465_1 16 WLNNLAGLLKNQGKYDEAMPLYERALRICE 45
                69*************************975 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00055
                HHHHHHHHHHHHHTT-H CS
  PF00515.23  1 akalynlGnaylklgky 17
                a +l+nl++++ +++ky
   MMETSP0890-20130614|465_1 56 ASTLNNLAVLLKNQKKY 72
                6789************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.2   1.4e-12   1.3e-09       3      54 ..      14      72 ..      12      73 .] 0.86

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.4e-12
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdy 54
               A  l++l+  l ++g+ydeA  +ye+Al+++     pn+++    ++nlA ++ ++  +y
  MMETSP0890-20130614|465_1 14 ATWLNNLAGLLKNQGKYDEAMPLYERALRICeevlgPNHPKvasTLNNLAVLLKNQK-KY 72
               56689************************977777777766666*********9985.56 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   8.1e-10   7.4e-07       2      34 ..      17      49 ..      15      51 .. 0.91
   2 ?    3.8   0.0      0.06        55       1      15 [.      58      72 ..      58      73 .] 0.84

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 8.1e-10
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
               l+nLa l  ++g+y++A  lyeraL++ ++ l+
  MMETSP0890-20130614|465_1 17 LNNLAGLLKNQGKYDEAMPLYERALRICEEVLG 49
               79*********************9999988776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.06
  PF13176.1  1 allnLarlysrlgdy 15
               +l+nLa+l  ++ +y
  MMETSP0890-20130614|465_1 58 TLNNLAVLLKNQKKY 72
               79******9888766 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   1.4e-09   1.3e-06       1      32 [.      14      45 ..      14      47 .. 0.94
   2 ?    4.6   0.0     0.034        31       2      17 ..      57      72 ..      56      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.4e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a +l+nl+ ++ ++g+y+eA  ++e+Al+++ 
   MMETSP0890-20130614|465_1 14 ATWLNNLAGLLKNQGKYDEAMPLYERALRICE 45
                679**************************986 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.034
                HHHHHHHHHHHHTT-H CS
  PF07719.12  2 ealynlGlayyklgdy 17
                  l+nl+ ++ ++++y
   MMETSP0890-20130614|465_1 57 STLNNLAVLLKNQKKY 72
                579***********99 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   2.2e-05      0.02       9      32 ..      10      33 ..       8      34 .. 0.94
   2 !   14.9   0.2   2.2e-05      0.02       1      29 [.      36      72 ..      36      73 .] 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.2e-05
  PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
               +P+ a  +nnLA ll+n+G+++eA
  MMETSP0890-20130614|465_1 10 HPDLATWLNNLAGLLKNQGKYDEA 33
               8999******************99 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.2e-05
  PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdl 29
               lye+al+++     Pn+   a  +nnLA+ll+n++++
  MMETSP0890-20130614|465_1 36 LYERALRICeevlgPNHpkvASTLNNLAVLLKNQKKY 72
               68888888767777666666**************987 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.9e-06    0.0045      27      62 ..      10      50 ..       4      53 .. 0.79
   2 !   15.9   0.0   1.5e-05     0.014       3      46 ..      20      71 ..      18      73 .] 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.9e-06
  PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal.....alaP 62
               +P+ a  l +la +l  +g++deA  l+++al      l+P
  MMETSP0890-20130614|465_1 10 HPDLATWLNNLAGLLKNQGKYDEAMPLYERALriceeVLGP 50
               48999999999999999999999999999999555555555 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.5e-05
  PF13432.1  3 lArallraGdydeAlaaleaalala........Peaaeallllaeallrlgr 46
               lA +l ++G+ydeA +++e+al+          P+ a  l +la++l  +++
  MMETSP0890-20130614|465_1 20 LAGLLKNQGKYDEAMPLYERALRICeevlgpnhPKVASTLNNLAVLLKNQKK 71
               7788889999999999999999876666776666677777777777666665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.8e-07   0.00044       4      33 ..      16      46 ..      12      65 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 4.8e-07
  PF13428.1  4 ll.alarallalGdpdeAiallrralalaPd 33
               +l  la +l ++G +deA+ l++ral+ + +
  MMETSP0890-20130614|465_1 16 WLnNLAGLLKNQGKYDEAMPLYERALRICEE 46
               55379*********************95543 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.5e-06     0.005       4      30 ..      17      43 ..      13      46 .. 0.91
   2 ?    1.3   0.0      0.35   3.2e+02       3      17 ..      58      72 ..      56      73 .] 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.5e-06
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++++ G+yd+A+  +e+al +
  MMETSP0890-20130614|465_1 17 LNNLAGLLKNQGKYDEAMPLYERALRI 43
               579999*******************87 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.35
               -TTT---HHHHTT-H CS
  PF13181.1  3 ayynlGdiYrqlGdy 17
               +++nl+ ++++ ++y
  MMETSP0890-20130614|465_1 58 TLNNLAVLLKNQKKY 72
               789999999999988 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.4e-06    0.0031      43      94 ..      17      68 ..       8      72 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.4e-06
  PF04910.9 43 LlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnassgkirlny 94
               L +l+ ++++qg++ +A+ l eraL i+e+v+ p+  ++ ++ ++  ++l+ 
  MMETSP0890-20130614|465_1 17 LNNLAGLLKNQGKYDEAMPLYERALRICEEVLGPNHPKVASTLNNLAVLLKN 68
               778999******************************9999888887766665 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.015        13      65      84 ..       9      28 ..       4      29 .. 0.90
   2 !   10.3   0.0   0.00068      0.62      64      82 ..      50      68 ..      25      68 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.015
  PF14357.1 65 eHPklagtlrnildsLanmG 84
               +HP+la  l+n++  L+n G
  MMETSP0890-20130614|465_1  9 NHPDLATWLNNLAGLLKNQG 28
               7************9999865 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00068
  PF14357.1 64 aeHPklagtlrnildsLan 82
                +HPk+a+tl+n++  L+n
  MMETSP0890-20130614|465_1 50 PNHPKVASTLNNLAVLLKN 68
               58************99986 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.6e-05      0.06       1      40 [.      26      71 ..       3      73 .] 0.49

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.6e-05
               HTT-HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH--- CS
  PF12895.2  1 eqhnyknAlflaekllaespk....dp..edaylyalAlclylnge 40
               +q+ y++A+ l+e++l  + +    ++   ++ l +lA  l ++++
  MMETSP0890-20130614|465_1 26 NQGKYDEAMPLYERALRICEEvlgpNHpkVASTLNNLAVLLKNQKK 71
               3455555555555555555544444112222233334444444444 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.4e-05     0.067      17      39 ..      26      48 ..      23      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.4e-05
                HTT-HHHHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlqal 39
                ++gky+eA  lY+ Al +++++l
   MMETSP0890-20130614|465_1 26 NQGKYDEAMPLYERALRICEEVL 48
                68****************99886 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.099       6      29 ..      19      42 ..      14      69 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
  PF12688.2  6 eragarDstGeeakAvplYrrAla 29
               + ag     G+ ++A+plY+rAl 
  MMETSP0890-20130614|465_1 19 NLAGLLKNQGKYDEAMPLYERALR 42
               568999999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 286.78
//
Query:       MMETSP0890-20130614|466_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 204.85
//
Query:       MMETSP0890-20130614|459_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-35  118.7   0.2    2.5e-34  116.2   0.6    1.9  2  PF00240.18 Ubiquitin family
    3.1e-30  105.2   0.7    4.6e-30  104.6   0.5    1.3  1  PF00838.12 Translationally controlled tumour protein
    2.8e-20   71.6   0.8    6.6e-20   70.4   0.6    1.7  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
     0.0015   18.1   0.0     0.0024   17.4   0.0    1.3  1  PF13019.1  Telomere stability and silencing
     0.0047   16.6   0.1      0.011   15.4   0.0    1.6  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.018   15.0   0.0    1.4  1  PF10302.4  DUF2407 ubiquitin-like domain
      0.033   13.9   0.0      0.055   13.2   0.0    1.4  1  PF11470.3  GLUT4 regulating protein TUG
       0.13   10.4   0.5         20    3.2   0.1    2.8  3  PF08337.7  Plexin cytoplasmic RasGAP domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.6   1.5e-37   2.5e-34       1      69 []       6      74 ..       6      74 .. 0.99
   2 ?   -1.4   0.0      0.78   1.3e+03      39      47 ..      83      92 ..      81      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.5e-37
                EESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
  PF00240.18  1 ktlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69
                ktl+gktitl+vepsdt++++K+ki++kegip+dqqrLi++Gk+LeD+rtls+yniq++stlhlvlrlr
   MMETSP0890-20130614|459_1  6 KTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                89*****************************************************************87 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.78
                EE---BE.TT CS
  PF00240.18 39 iysGkvL.eD 47
                i+sGk++  D
   MMETSP0890-20130614|459_1 83 IFSGKEMcSD 92
                9****99665 PP

>> PF00838.12  Translationally controlled tumour protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.5   2.7e-33   4.6e-30       3     147 ..      79     225 .]      77     225 .] 0.95

  Alignments for each domain:
  == domain 1    score: 104.6 bits;  conditional E-value: 2.7e-33
                 EEEESS-TTT-EEE----EEETTTEEEE-------------------------.---GGG-----HHHHTTT-EEEHHHHHHHHHHHHHHHHHHHHHHHHH..---HHHHHHHHH---HHHHT-HHTT-EEEE--TTT-----EEEEE CS
  PF00838.12   3 iykDvlsgdellsDsfplklvddlvyevdgklvtrkeiddvliganpsaegge.egveeavekvvdivlnfrLqetafdkksfkayikkylkavkekleee..kkeevelFkkkieeavkkllakfkdlqffiGesmaedgmvalley 147
                 iy  ++sg e++sD+fp +++++ + +v+++ +t+ ++++++igan+saegg+ egv+++v +v  i ++f+Lq+  +dk + k ++k+y++a+ ++ +e    +ee+++F+ ++ ea k ll k k+++ fi e  +e g v + e+
   MMETSP0890-20130614|459_1  79 IYVCIFSGKEMCSDAFPQEMIEGGIMKVQSRNMTE-GGEEINIGANASAEGGDdEGVDDTVITVDAIEYTFKLQSFDMDKATLKGWLKNYFQAIRKHKKEAgiAQEEIKAFMAQAPEAAKFLLGKAKEMEIFINEDFDEKGAVCFREW 225
                 8999******************************9.9***************99****************************************9998886335888************************************98776 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.6   3.9e-23   6.6e-20       1      72 []       1      71 [.       1      71 [. 0.99

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 3.9e-23
               EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
  PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72
               ++i++k+ +gk+++++V+p++t+ +++++ ++k+gip+ +q+rLiF G++L++ +t+ d++i++++t+++v+
  MMETSP0890-20130614|459_1  1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
               89************************************.******************************996 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0024       1      88 [.       1      76 [.       1      77 [. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.4e-06
  PF13019.1  1 invlvssldglslpktlsltlpstatvsdlvdklserlpaslteslvLtttsnkqlssssdlslssllsssedaeflslrlslrlcGG 88
               ++++v++l+g    kt++l ++++ t++++ +k++++ ++++++++++  +  kql  ++  +ls++  ++e+    +l+l+lrl+GG
  MMETSP0890-20130614|459_1  1 MQIFVKTLTG----KTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIF-A-GKQL--EDGRTLSDYNIQKES----TLHLVLRLRGG 76
               69********....9**************************99865443.3.4566..788889999888888....99********9 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.2e-06     0.011      12      87 ..      10      71 ..       1      74 [. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.2e-06
               --EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGGS--TTS-----EEEEEEE CS
  PF13881.1 12 GkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkelrlplgevkggvtvmHvvv 87
               Gk +  + +++++t++++k+k+     ++ke  p  +++ +li aGk Led +tL++++++ +       ++H+v+
  MMETSP0890-20130614|459_1 10 GK-TITLDVEPSDTIDNVKQKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVL 71
               55.5556678899999999998.....5677755..44559*****************766554......477766 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.1e-05     0.018      14      68 ..      13      63 ..       2     179 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
  PF10302.4 14 lrldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdlkee 68
               ++ld++   s t+ + k+ i+++ +   +  + rlI+aGk L+d  +l++   ++
  MMETSP0890-20130614|459_1 13 ITLDVE--PSDTIDNVKQKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYNIQK 63
               566666..899***********9955544..4578**********9998765544 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-05     0.055       5      65 .]       9      69 ..       5      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.2e-05
  PF11470.3  5 nfrrvkvkvtpsttltqVleeackkfkldsneytLkhnnkpldlslpfRlanLpngakLeL 65
               ++++ ++ v+ps+t+  V ++   k ++ +++ +L + +k+l+   ++   n+   + L L
  MMETSP0890-20130614|459_1  9 TGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69
               68999*************************************9988888888888877765 PP

>> PF08337.7  Plexin cytoplasmic RasGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.012        20     198     223 ..       7      32 ..       1      42 [. 0.83
   2 ?    1.2   0.0     0.045        76     271     291 ..      54      74 ..      45     111 .. 0.83
   3 ?    2.7   0.0     0.016        28     478     512 ..     156     193 ..     148     208 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.012
                TTTS-SEEEEEETTSBHHHHHHHHHH CS
  PF08337.7 198 eeaeeavsvkvldcDtisqvkekvld 223
                  + +++++ v  +Dti  vk+k+ d
  MMETSP0890-20130614|459_1   7 TLTGKTITLDVEPSDTIDNVKQKIQD 32 
                556678999***************87 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.045
                -BHHHHT--TT-EEEEEESX. CS
  PF08337.7 271 ntlahYkvsdgatlalvkkvs 291
                 tl +Y+++  +tl+lv +  
  MMETSP0890-20130614|459_1  54 RTLSDYNIQKESTLHLVLRLR 74 
                59**************99865 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.016
                XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXX CS
  PF08337.7 478 dipeykklveryykdirkl...pplsdqemnaalaees 512
                d +++k + ++y+++irk    + ++++e++a++a+  
  MMETSP0890-20130614|459_1 156 DKATLKGWLKNYFQAIRKHkkeAGIAQEEIKAFMAQAP 193
                6688999*********9762225699999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|467_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-11   43.4   0.0    1.9e-11   43.4   0.0    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.048   13.4   0.0      0.048   13.4   0.0    1.2  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.7e-15   1.9e-11      16      87 ..      27     100 ..      11     103 .] 0.82

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.7e-15
                 CEEEEEEE..TTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGS CS
  PF00179.21  16 gikaevve..dsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLk 87 
                 +++a++v+  d  +++w++ i gp gt ++g l+ l i+  + YP  PP+v+f+++i    v ++G++ ++ L 
   MMETSP0890-20130614|467_1  27 TVSAGLVDpeDVFMTNWNASIIGPLGTSFDGRLYSLLIECGPRYPSVPPSVRFTSQIALTCVGPDGRVDIKRLV 100
                 5566666643356889****************************************************998776 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     7e-06     0.048      50      73 ..      59      82 ..      10     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7e-06
                xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17 50 sleleirlpedYPeeaPiitlsst 73
                 ++l i++ ++YP+++P ++++s+
   MMETSP0890-20130614|467_1 59 LYSLLIECGPRYPSVPPSVRFTSQ 82
                57899**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 379.73
//
Query:       MMETSP0890-20130614|464_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-54  182.1   0.0      2e-53  181.1   0.0    1.6  1  PF00069.20 Protein kinase domain
    3.4e-23   81.9   0.0    5.7e-23   81.2   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
     0.0029   17.2   0.1     0.0051   16.4   0.1    1.3  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.032   13.6   0.2      0.067   12.6   0.0    1.7  2  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.0   5.8e-57     2e-53       5     250 ..     116     409 ..     112     421 .. 0.90

  Alignments for each domain:
  == domain 1    score: 181.1 bits;  conditional E-value: 5.8e-57
                 EEEE----EEEEEEEETTCCE...................EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..........CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.....................HHHHHHHHHHT-SSGGGS-- CS
  PF00069.20   5 eklGsGsfGkVykakkkktgk...................kvAvKilkkeeekskkektavr.Elkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..........eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.....................eelkdlikkllekdpakRlt 250
                 ++lG GsfG+Vy +  +++ +                     A+K +     +skk+ ++vr E +++++l  H+ni++l ++++ ++ lyl++e++ gg+lf++l+++++++ +++ +++ +i ++l + H  +i++rDLKpeN+Lld +g++k++DFGl+k l              + +++l+gt+eYmAPE l  ++ey+ +vD W+lG++++ell+g +p++++   ++ el+++i+  +l+ +   +   +                     +e+ d+++kll+++p++Rl 
   MMETSP0890-20130614|464_1 116 SQLGHGSFGRVYLVCGRSQVEkikgkakniehltcserknLSALKSIPLAALNSKKKAEHVRyERRVVEMLqGHENIIQLRSAWRCSNALYLLTEVAWGGELFRHLQHKRRFEPRQVAFWTAEISSALTHAHTLRICYRDLKPENLLLDARGHIKLVDFGLSKILslkcvgqdqaMDATNGCRSLCGTPEYMAPETLD-RREYGYSVDFWALGMLTAELLSGLPPWYTN---NRDELFRRIRFDPLDLSPVVHAILRtvpkafkrtgdpaqanawdiaNEASDFLSKLLHRNPHQRLG 409
                 78*********9999888888677778888888888888888888888888888888777779********66******************************************************************************************99******99988888899****************.****************************99...777777777777777765555444467788999999999*************************97 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.7e-26   5.7e-23       4     217 ..     115     351 ..     112     359 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 1.7e-26
                 EEEE-------EEEEEEET...............TTTSSEEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES.....TTTSCEEESTT-E...ECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHH CS
  PF07714.12   4 gkklGeGafGkVvegtlkg...............ekekkevkVavKtl..kesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi.....ekddyykkkeeak...lpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlel 217
                  ++lG+G+fG+V+    ++               + ++++   a+K++   + +++++ e++  e ++++ l  h+ni++l  +   ++ l+++te + gG+L + L++k  ++++ +++  ++++i++++ + ++ ++  rdL   N Ll+ + ++k+ DfGL++ +      +d+ + ++++++      ++mapE+l+++++    D W+ G+l+ E+++ g  p+ + +  e++++
   MMETSP0890-20130614|464_1 115 ISQLGHGSFGRVYLVCGRSqvekikgkakniehlTCSERKNLSALKSIplAALNSKKKAEHVRYERRVVEMLqGHENIIQLRSAWRCSNALYLLTEVAWGGELFRHLQHK--RRFEPRQVAFWTAEISSALTHAHTLRICYRDLKPENLLLDARGHIKLVDFGLSKILslkcvGQDQAMDATNGCRslcGTPEYMAPETLDRREYGYSVDFWALGMLTAELLS-GLPPWYTNNRDELFRR 351
                 579*********9866666667899999989988788888999****96445666667888899********99************99********************98..9****************************************************9987777533444444444443335679*****************************9.7788777766666655 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.5e-06    0.0051     162     195 ..     226     277 ..     164     279 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.5e-06
                 C...................SS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
  PF01636.18 162 g...................aeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                 +                   a   +++ +Dl+p Nll+d   g++ ++Df+++
   MMETSP0890-20130614|464_1 226 RfeprqvafwtaeissalthAHTLRICYRDLKPENLLLD-ARGHIKLVDFGLS 277
                 122222223333333334457789***************.557777****986 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05     0.067     131     169 ..     238     274 ..     142     280 .. 0.84
   2 ?   -3.4   0.1       1.6   5.3e+03      67      95 ..     475     499 ..     468     533 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.9e-05
                 HHHHHHTT----EEEE-S------EEE-------EE--- CS
  PF01633.15 131 eleklleekespvvfCHnDlqegNillnkeekklvlIDF 169
                 e+ + l  + +++ +C  Dl ++N+ll + ++ ++l+DF
   MMETSP0890-20130614|464_1 238 EISSAL-THAHTLRICYRDLKPENLLL-DARGHIKLVDF 274
                 444444.566779**************.*********** PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHTT---SS--SS-HHHHH CS
  PF01633.15  67 ilkkiakklaelHslelseskeskslwkt 95 
                 i+k+ia++      +++++ +e ++l++t
   MMETSP0890-20130614|464_1 475 ISKQIANE----KHTDPNTLQERSRLVRT 499
                 44444443....33344344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:00.92
# Mc/sec: 1518.56
//
Query:       MMETSP0890-20130614|463_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1136  (0.0830895); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:00.57
# Mc/sec: 2288.93
//
Query:       MMETSP0890-20130614|471_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-29  100.9   0.1    5.6e-19   67.7   0.0    1.9  2  PF13424.1  Tetratricopeptide repeat
    8.5e-28   95.2   0.5      3e-14   52.2   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    3.5e-16   58.4   0.4    1.2e-10   40.7   0.1    1.9  2  PF13414.1  TPR repeat
    3.1e-11   42.2   1.3    4.9e-05   22.6   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    7.3e-11   40.9   0.0    0.00016   21.1   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    5.1e-09   35.2   0.9     0.0008   19.0   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
      2e-06   27.8   0.0      0.057   13.9   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    4.4e-06   27.0   0.0    1.1e-05   25.8   0.0    1.6  1  PF13432.1  Tetratricopeptide repeat
    6.1e-05   22.3   0.3      0.028   14.0   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    0.00013   21.6   0.0      0.054   13.2   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00028   20.7   0.7        2.2    8.5   0.0    3.7  3  PF13431.1  Tetratricopeptide repeat
     0.0027   17.9   0.1       0.32   11.4   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.0   0.1       0.09   12.7   0.0    1.8  1  PF12688.2  Tetratrico peptide repeat
      0.053   13.5   0.0       0.66   10.0   0.0    2.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.054   13.3   0.0        9.2    6.1   0.0    2.0  2  PF07448.6  Secreted phosphoprotein 24 (Spp-24)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   6.2e-22   5.6e-19      14      78 .]       3      68 ..       2      68 .. 0.97
   2 !   36.8   0.0   2.6e-12   2.4e-09       5      46 ..      36      78 ..      35      79 .] 0.94

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 6.2e-22
  PF13424.1 14 vlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
               +l+++g+ydeA  lye+a+e+  r++g++hp++a+ lnnla l++ + + deA +++e+A+ei+ek
  MMETSP0890-20130614|471_1  3 LLQQQGKYDEAKPLYERAIEIwERVHGPNHPEVATGLNNLAGLLRNQRKCDEAMPLYERAIEICEK 68
               689******************88899**************************************97 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 2.6e-12
  PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdta 46
               at lnnla++lr +++ deA  lye+a+e+  +++g++hpd+a
  MMETSP0890-20130614|471_1 36 ATGLNNLAGLLRNQRKCDEAMPLYERAIEIcEKVHGPNHPDVA 78
               7889**************************88889******99 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   5.7e-14   5.2e-11      11      42 .]       3      34 ..       2      34 .. 0.96
   2 !   52.2   0.0   3.3e-17     3e-14       1      42 []      35      76 ..      35      76 .. 0.97

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 5.7e-14
  PF13374.1 11 alrargryeeAlaleeealairrrllGddHPd 42
               +l+++g+y+eA +l+e+a +i++r++G++HP+
  MMETSP0890-20130614|471_1  3 LLQQQGKYDEAKPLYERAIEIWERVHGPNHPE 34
               699****************************6 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 3.3e-17
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +lr++++ +eA +l+e+a +i+++++G++HPd
  MMETSP0890-20130614|471_1 35 VATGLNNLAGLLRNQRKCDEAMPLYERAIEICEKVHGPNHPD 76
               6888*************************************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   1.3e-13   1.2e-10      13      67 ..       4      65 ..       2      67 .. 0.91
   2 !   21.5   0.0   1.3e-07   0.00012       3      38 ..      36      76 ..      34      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 1.3e-13
  PF13414.1 13 lfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               l ++g+ydeA  +ye+A+e++     pn++e    ++nlA +++++ k  +eA+  ye+A+e+
  MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEIWervhgPNHPEvatGLNNLAGLLRNQRK-CDEAMPLYERAIEI 65
               679*****************88888899988888***********985.79**********98 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 1.3e-07
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae 38
               A  l++l+  l ++++ deA  +ye+A+e++     pn+++
  MMETSP0890-20130614|471_1 36 ATGLNNLAGLLRNQRKCDEAMPLYERAIEICekvhgPNHPD 76
               66699*************************87777799887 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   5.4e-08   4.9e-05      11      30 ..       4      23 ..       3      26 .. 0.92
   2 !   19.0   0.1   7.3e-07   0.00066       2      32 ..      37      67 ..      36      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.4e-08
                HHHTT-HHHHHHHHHHHHHH CS
  PF00515.23 11 ylklgkydeAleyyekALel 30
                ++++gkydeA   ye+A+e+
   MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEI 23
                789****************8 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 7.3e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                  l+nl+ +++++ k deA   ye+A+e+ +
   MMETSP0890-20130614|471_1 37 TGLNNLAGLLRNQRKCDEAMPLYERAIEICE 67
                579*************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-06    0.0015       8      31 ..       3      26 ..       2      33 .. 0.84
   2 !   21.1   0.0   1.8e-07   0.00016       2      31 ..      39      68 ..      38      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-06
  PF13176.1  8 lysrlgdyekAielyeraLaltkd 31
               l +++g+y++A  lyera+++++ 
  MMETSP0890-20130614|471_1  3 LLQQQGKYDEAKPLYERAIEIWER 26
               5799*************8887765 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.8e-07
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkd 31
               l+nLa l +++++ ++A  lyera+++ + 
  MMETSP0890-20130614|471_1 39 LNNLAGLLRNQRKCDEAMPLYERAIEICEK 68
               89*********************9888765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   8.8e-07    0.0008      11      30 ..       4      23 ..       3      23 .. 0.93
   2 !   15.2   0.0   1.4e-05     0.013       2      32 ..      37      67 ..      36      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.8e-07
                HHHTT-HHHHHHHHHHHHHH CS
  PF07719.12 11 yyklgdyeeAleafekAlel 30
                + ++g+y+eA+ ++e+A+e+
   MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEI 23
                789***************96 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.4e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldP 32
                 +l+nl+ +++++++ +eA  ++e+A+e++ 
   MMETSP0890-20130614|471_1 37 TGLNNLAGLLRNQRKCDEAMPLYERAIEICE 67
                6899************************986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.2e-05     0.057      11      40 ..       4      38 ..       2      40 .. 0.84
   2 !   12.8   0.0   0.00015      0.13       4      34 ..      39      74 ..      36      79 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.2e-05
  PF13428.1 11 llalGdpdeAiallrrala.....laPddaealll 40
               l ++G +deA  l++ra++     ++P+++e+ + 
  MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEiwervHGPNHPEVATG 38
               6789**************97777788999988765 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00015
  PF13428.1  4 llalarallalGdpdeAiallrrala.....laPdd 34
               l  la +l+++   deA+ l++ra++     ++P++
  MMETSP0890-20130614|471_1 39 LNNLAGLLRNQRKCDEAMPLYERAIEicekvHGPNH 74
               56799********************94444444555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.2e-08   1.1e-05       7      59 ..       4      69 ..       2      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.2e-08
  PF13432.1  7 llraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....a 59
               l ++G+ydeA +++e+a++ +        Pe a  l +la +l  + + deA  l+++a+      
  MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEIWervhgpnhPEVATGLNNLAGLLRNQRKCDEAMPLYERAIeicekV 69
               789******************************************************998555554 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1     3e-05     0.028      11      30 ..       4      23 ..       3      23 .. 0.92
   2 !    6.7   0.0    0.0066         6       4      30 ..      39      65 ..      36      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3e-05
               HHHTT-HHHHHHHHH---HH CS
  PF13181.1 11 YrqlGdydkAkeylekalel 30
               + q G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEI 23
               679***************97 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0066
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++r+  + d+A+  +e+a+e+
  MMETSP0890-20130614|471_1 39 LNNLAGLLRNQRKCDEAMPLYERAIEI 65
               67888888888888***********98 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.9e-05     0.054      17      38 ..       6      27 ..       4      40 .. 0.90
   2 !    6.8   0.0    0.0058       5.3      20      38 ..      51      69 ..      44      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.9e-05
                HTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlqa 38
                ++gky+eA  lY+ A+e+++++
   MMETSP0890-20130614|471_1  6 QQGKYDEAKPLYERAIEIWERV 27
                68****************9875 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0058
                -HHHHHHHHHHHHHHHHHH CS
  PF04212.13 20 kyeeAlelYkeAlelLlqa 38
                k +eA  lY+ A+e+++++
   MMETSP0890-20130614|471_1 51 KCDEAMPLYERAIEICEKV 69
                7789***********9875 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.17   1.6e+02      22      33 ..       3      14 ..       3      15 .. 0.88
   2 !    8.5   0.0    0.0025       2.2       1      32 [.      16      55 ..      16      56 .. 0.72
   3 ?    5.6   0.0     0.021        19       1      14 [.      58      76 ..      58      78 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.17
  PF13431.1 22 lllnnGdleeAe 33
               ll+ +G+++eA+
  MMETSP0890-20130614|471_1  3 LLQQQGKYDEAK 14
               5889******97 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0025
  PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeA 32
               lye+a+e+      Pn+   a  +nnLA ll n+ + +eA
  MMETSP0890-20130614|471_1 16 LYERAIEIWervhgPNHpevATGLNNLAGLLRNQRKCDEA 55
               799****977777777744466666888888887766655 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.021
  PF13431.1  1 lyekaleld.....Pnnad 14
               lye+a+e++     Pn++d
  MMETSP0890-20130614|471_1 58 LYERAIEICekvhgPNHPD 76
               7*******85555566665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00035      0.32       9      28 ..       4      22 ..       2      25 .. 0.82
   2 ?    4.5   0.0     0.056        51       7      28 ..      43      64 ..      41      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00035
               HHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  9 syyklgdtdeAlealerlik 28
               + +++g++deA+ ++er i+
  MMETSP0890-20130614|471_1  4 L-QQQGKYDEAKPLYERAIE 22
               4.4467***********997 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.056
               HHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  7 alsyyklgdtdeAlealerlik 28
               a +++++ + deA+ ++er i+
  MMETSP0890-20130614|471_1 43 AGLLRNQRKCDEAMPLYERAIE 64
               5566777799*********997 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.8e-05      0.09      11      65 ..       4      63 ..       1      67 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.8e-05
  PF12688.2 11 rDstGeeakAvplYrrAla.....aGLagarrrratiqlaSsLRnlGrveeslalleael 65
                 + G+ ++A plY+rA++     +G +  +       la  LRn  + +e++ l e+++
  MMETSP0890-20130614|471_1  4 LQQQGKYDEAKPLYERAIEiwervHGPNHPEVATGLNNLAGLLRNQRKCDEAMPLYERAI 63
               567899***********9855333455555555556689999999999999999998876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00072      0.66       2      51 ..       7      64 ..       6      78 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00072
               TT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC..T CS
  PF12895.2  2 qhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk..l 51
               q+ y++A  l+e++++   +      p  ++ l +lA  l ++ + ++A+ l+++  +
  MMETSP0890-20130614|471_1  7 QGKYDEAKPLYERAIEIWERvhgpnHPeVATGLNNLAGLLRNQRKCDEAMPLYERaiE 64
               6677777777777777776666653233455666689999999999888888876541 PP

>> PF07448.6  Secreted phosphoprotein 24 (Spp-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.01       9.2     102     122 ..      12      32 ..       1      37 [. 0.79
   2 ?    5.7   0.0     0.013        12      92     122 ..      41      74 ..      36      77 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.01
  PF07448.6 102 kgeqlydrsleimrrvlplgn 122
                ++++ly+r++ei  rv+ + +
  MMETSP0890-20130614|471_1  12 EAKPLYERAIEIWERVHGPNH 32 
                4679************99876 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.013
  PF07448.6  92 yllGllsdeskge...qlydrsleimrrvlplgn 122
                 l Gll ++ k +   +ly+r++ei  +v+ + +
  MMETSP0890-20130614|471_1  41 NLAGLLRNQRKCDeamPLYERAIEICEKVHGPNH 74 
                577888877665423379**********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 278.40
//
Query:       MMETSP0890-20130614|472_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-07   30.2   3.1    2.6e-07   30.2   2.2    2.1  2  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2     0.055   7.5e+02      16      20 ..      23      27 ..      22      28 .. 0.86
   2 !   30.2   2.2   1.9e-11   2.6e-07       4      31 .]      29      56 ..      28      56 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.055
                EEEEE CS
  PF00397.21 16 vYYyN 20
                +YY++
   MMETSP0890-20130614|472_1 23 PYYID 27
                8**98 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 1.9e-11
                SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21  4 gWeersddddGrvYYyNheTgetqWekP 31
                gW +++d+++G+ YY++ +Tg tqW  P
   MMETSP0890-20130614|472_1 29 GWWHKFDPNSGKFYYVHEKTGATQWAVP 56
                7545565558***************666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.65
# Mc/sec: 272.82
//
Query:       MMETSP0890-20130614|473_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-38  130.3   0.8    2.3e-22   78.5   0.1    2.0  2  PF13424.1  Tetratricopeptide repeat
    1.1e-28   98.1   1.4    3.7e-12   45.5   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    8.5e-19   66.8   1.4    1.5e-11   43.6   0.1    2.1  2  PF13414.1  TPR repeat
      3e-16   58.1   0.9      5e-06   25.7   0.0    3.1  3  PF00515.23 Tetratricopeptide repeat
    4.9e-15   54.0   0.9    1.1e-05   24.8   0.0    3.1  3  PF07719.12 Tetratricopeptide repeat
      3e-11   42.1   0.2    7.5e-05   22.1   0.0    3.1  3  PF13176.1  Tetratricopeptide repeat
    1.4e-09   38.2   0.1    0.00031   21.2   0.0    2.1  2  PF13432.1  Tetratricopeptide repeat
    2.1e-08   33.9   0.1      0.098   13.2   0.0    3.1  3  PF13428.1  Tetratricopeptide repeat
      7e-07   28.4   0.6      0.036   13.7   0.0    3.1  3  PF13181.1  Tetratricopeptide repeat
    1.5e-06   27.8   1.6      0.081   13.0   0.0    3.5  3  PF13431.1  Tetratricopeptide repeat
    1.5e-05   24.8   0.0    2.1e-05   24.4   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00012   22.1   0.7       0.12   12.8   0.0    3.1  3  PF13174.1  Tetratricopeptide repeat
    0.00014   21.8   0.0       0.24   11.7   0.0    2.5  2  PF07721.9  Tetratricopeptide repeat
     0.0018   17.9   0.1        3.6    7.4   0.1    2.9  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.002   18.2   0.0       0.11   12.6   0.0    2.0  2  PF02036.12 SCP-2 sterol transfer family
     0.0037   17.1   0.4       0.03   14.2   0.2    2.7  1  PF12688.2  Tetratrico peptide repeat
      0.005   16.5   0.2          2    8.1   0.0    2.3  2  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.3   0.5        1.5    8.5   0.0    2.0  2  PF11846.3  Domain of unknown function (DUF3366)
      0.044   13.5   0.1        1.2    8.9   0.0    2.1  2  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   2.8e-18     2e-15      22      78 .]       2      59 ..       1      59 [. 0.97
   2 !   78.5   0.1   3.2e-25   2.3e-22       8      75 ..      30      98 .]      28      98 .] 0.98

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 2.8e-18
  PF13424.1 22 deAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
               deA  lye+a+e+  r lg++hpd+a  l nla l+ ++g+ydeA +++e++l+i e+
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEIgERILGPNHPDVAIRLSNLAALLTYQGKYDEATPLYERSLNISEQ 59
               8*****************************************************9885 PP

  == domain 2    score: 78.5 bits;  conditional E-value: 3.2e-25
  PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               l+nla +l  +g+ydeA  lye++l++  ++lg++hpd+a++l n a l++a+g+ydeA++++++A+ei
  MMETSP0890-20130614|473_1 30 LSNLAALLTYQGKYDEATPLYERSLNIsEQKLGPNHPDVATTLSNTALLLMAQGKYDEAKPLFQRAIEI 98
               78*****************************************************************97 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   1.3e-08   9.3e-06      19      42 .]       2      25 ..       1      25 [. 0.97
   2 !   45.5   0.0   5.2e-15   3.7e-12       1      42 []      26      67 ..      26      67 .. 0.97
   3 !   25.6   0.0   9.6e-09   6.9e-06       1      31 [.      68      98 .]      68      98 .] 0.96

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.3e-08
  PF13374.1 19 eeAlaleeealairrrllGddHPd 42
               +eA +l+e+a +i +r+lG++HPd
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEIGERILGPNHPD 25
               8**********************8 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 5.2e-15
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a  l+nLA +l  +g+y+eA +l+e++l i ++ lG++HPd
  MMETSP0890-20130614|473_1 26 VAIRLSNLAALLTYQGKYDEATPLYERSLNISEQKLGPNHPD 67
               67789************************************8 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 9.6e-09
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealai 31
               +a++l+n Al+l+a+g+y+eA +l+++a +i
  MMETSP0890-20130614|473_1 68 VATTLSNTALLLMAQGKYDEAKPLFQRAIEI 98
               79*************************9886 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   1.3e-09   9.7e-07      20      68 ..       2      57 ..       1      58 [. 0.84
   2 !   43.6   0.1   2.1e-14   1.5e-11       2      67 ..      26      98 .]      25      98 .] 0.89

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.3e-09
  PF13414.1 20 deAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
               deA  +ye+A+e+      pn+++    ++nlA+++  +g +y+eA   ye++l+++
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEIGerilgPNHPDvaiRLSNLAALLTYQG-KYDEATPLYERSLNIS 57
               89**********84444457777766589***********.6************987 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 2.1e-14
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               +A  l +l+  l ++g+ydeA  +ye++l ++     pn+++    ++n Al+++ +g +y+eA   +++A+e+
  MMETSP0890-20130614|473_1 26 VAIRLSNLAALLTYQGKYDEATPLYERSLNISeqklgPNHPDvatTLSNTALLLMAQG-KYDEAKPLFQRAIEI 98
               6788999**********************9855566688877777*************.6************96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0043       3.1      18      30 ..       2      14 ..       1      16 [. 0.93
   2 !   22.7   0.1   6.3e-08   4.6e-05       4      31 ..      30      57 ..      27      60 .. 0.90
   3 !   25.7   0.0     7e-09     5e-06       2      30 ..      70      98 .]      69      98 .] 0.93

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0043
                HHHHHHHHHHHHH CS
  PF00515.23 18 deAleyyekALel 30
                deA   ye+A+e+
   MMETSP0890-20130614|473_1  2 DEAKPLYERAIEI 14
                89*********98 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 6.3e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALeln 31
                l nl++++ ++gkydeA   ye+ L + 
   MMETSP0890-20130614|473_1 30 LSNLAALLTYQGKYDEATPLYERSLNIS 57
                78*********************99775 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 7e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                 +l n +++++ +gkydeA   +++A+e+
   MMETSP0890-20130614|473_1 70 TTLSNTALLLMAQGKYDEAKPLFQRAIEI 98
                578999*********************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0093       6.7      18      30 ..       2      14 ..       1      17 [. 0.91
   2 !   20.1   0.1   4.8e-07   0.00035       3      31 ..      29      57 ..      27      60 .. 0.90
   3 !   24.8   0.0   1.5e-08   1.1e-05       2      30 ..      70      98 .]      69      98 .] 0.92

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0093
                HHHHHHHHHHHHH CS
  PF07719.12 18 eeAleafekAlel 30
                +eA+ ++e+A+e+
   MMETSP0890-20130614|473_1  2 DEAKPLYERAIEI 14
                8**********97 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 4.8e-07
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleld 31
                 l nl+ ++ ++g+y+eA  ++e++l + 
   MMETSP0890-20130614|473_1 29 RLSNLAALLTYQGKYDEATPLYERSLNIS 57
                589***********************986 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 1.5e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  l n +l+++++g+y+eA+ +f++A+e+
   MMETSP0890-20130614|473_1 70 TTLSNTALLLMAQGKYDEAKPLFQRAIEI 98
                568999*********************96 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.048        35      16      30 ..       2      16 ..       1      22 [. 0.72
   2 !   22.1   0.0     1e-07   7.5e-05       2      32 ..      30      60 ..      30      64 .. 0.88
   3 !   12.6   0.0   0.00012     0.083       1      27 [.      71      97 ..      71      98 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.048
  PF13176.1 16 ekAielyeraLaltk 30
               ++A  lyera+++ +
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEIGE 16
               789999999766654 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1e-07
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
               l+nLa l + +g+y++A  lyer+L + +  
  MMETSP0890-20130614|473_1 30 LSNLAALLTYQGKYDEATPLYERSLNISEQK 60
               79*********************99876655 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 0.00012
  PF13176.1  1 allnLarlysrlgdyekAielyeraLa 27
               +l+n a l +++g+y++A  l++ra++
  MMETSP0890-20130614|473_1 71 TLSNTALLLMAQGKYDEAKPLFQRAIE 97
               578889999***************554 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.3e-07   0.00031      14      65 .]       2      66 ..       1      66 [. 0.76
   2 !   15.4   0.0   2.8e-05      0.02       4      24 ..      76      96 ..      73      98 .] 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.3e-07
  PF13432.1 14 deAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaPddp 65
               deA +++e+a++          P+ a  l +la +l  +g++deA  l+++ l     +l+P++p
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEIGerilgpnhPDVAIRLSNLAALLTYQGKYDEATPLYERSLniseqKLGPNHP 66
               678888888888888888844666666666666666666************99899988888876 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 2.8e-05
  PF13432.1  4 ArallraGdydeAlaaleaal 24
               A++l+++G+ydeA +++++a+
  MMETSP0890-20130614|473_1 76 ALLLMAQGKYDEAKPLFQRAI 96
               899***************997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0085       6.1      18      42 ..       2      31 ..       1      33 [. 0.82
   2 !   11.9   0.0   0.00036      0.26       5      41 ..      31      72 ..      29      75 .. 0.80
   3 !   13.2   0.0   0.00014     0.098       5      29 ..      73      97 ..      69      98 .] 0.87

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0085
  PF13428.1 18 deAiallrrala.....laPddaealllLa 42
               deA  l++ra++     l+P+++++ ++L 
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEigeriLGPNHPDVAIRLS 31
               78888999998877777899***9999986 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00036
  PF13428.1  5 lalarallalGdpdeAiallrrala.....laPddaealllL 41
                 la++l  +G +deA  l++r l      l+P+++++ + L
  MMETSP0890-20130614|473_1 31 SNLAALLTYQGKYDEATPLYERSLNiseqkLGPNHPDVATTL 72
               57999*****************98544444788888887655 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 0.00014
  PF13428.1  5 lalarallalGdpdeAiallrrala 29
                  a +l+a+G +deA  l++ra++
  MMETSP0890-20130614|473_1 73 SNTALLLMAQGKYDEAKPLFQRAIE 97
               566899*****************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.076        55      18      30 ..       2      14 ..       1      18 [. 0.90
   2 !    8.3   0.1    0.0026       1.9       6      32 ..      32      58 ..      28      60 .. 0.85
   3 !   13.7   0.0     5e-05     0.036       6      30 ..      74      98 .]      69      98 .] 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.076
               HHHHHHHH---HH CS
  PF13181.1 18 dkAkeylekalel 30
               d+Ak  +e+a+e+
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEI 14
               89*********98 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0026
               T---HHHHTT-HHHHHHHHH---HHHH CS
  PF13181.1  6 nlGdiYrqlGdydkAkeylekalelkp 32
               nl+ ++   G+yd+A   +e+ l ++ 
  MMETSP0890-20130614|473_1 32 NLAALLTYQGKYDEATPLYERSLNISE 58
               677778889************998875 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 5e-05
               T---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  6 nlGdiYrqlGdydkAkeylekalel 30
               n +++++  G+yd+Ak  +++a+e+
  MMETSP0890-20130614|473_1 74 NTALLLMAQGKYDEAKPLFQRAIEI 98
               568899*****************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00027       0.2       1      32 [.       7      46 ..       7      47 .. 0.85
   2 !   13.0   0.0   0.00011     0.081       2      33 ..      50      89 ..      49      90 .. 0.67
   3 ?   -0.5   0.0       2.5   1.8e+03       1       8 [.      91      98 .]      91      98 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00027
  PF13431.1  1 lyekaleld.....Pnnadayn...nLAelllnnGdleeA 32
               lye+a+e+      Pn++d+     nLA ll  +G+++eA
  MMETSP0890-20130614|473_1  7 LYERAIEIGerilgPNHPDVAIrlsNLAALLTYQGKYDEA 46
               79******656777******9977888888889****998 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00011
  PF13431.1  2 yekaleld.....Pnnadayn...nLAelllnnGdleeAe 33
               ye++l+++     Pn++d+ +   n A+ll ++G+++eA+
  MMETSP0890-20130614|473_1 50 YERSLNISeqklgPNHPDVATtlsNTALLLMAQGKYDEAK 89
               6777777555666777666662226667777*******97 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 2.5
  PF13431.1  1 lyekalel 8 
               l+++a+e+
  MMETSP0890-20130614|473_1 91 LFQRAIEI 98
               699***96 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.9e-08   2.1e-05       4      83 ..       7      94 ..       4      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.9e-08
               -HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHHH CS
  PF12895.2  4 nyknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk......leldssslgcryll.A..rcllklgkydeAiavLek 83
                y+ A+ ++e++l  ++  p  +  l +lA  l  +g+y++A  l+++      ++l +++++ +  l +    l ++gkydeA  ++++
  MMETSP0890-20130614|473_1  7 LYERAIEIGERILGPNH--PdVAIRLSNLAALLTYQGKYDEATPLYERslniseQKLGPNHPDVATTLsNtaLLLMAQGKYDEAKPLFQR 94
               5999********99987..4356667778*****************99****9999999999999977553366669999****887776 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.64   4.6e+02      17      28 ..       2      13 ..       1      14 [. 0.87
   2 ?    5.0   0.0      0.05        36       6      25 ..      33      52 ..      30      56 .. 0.76
   3 !   12.8   0.0   0.00016      0.12       5      28 ..      74      97 ..      71      98 .] 0.89

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.64
               HHHHHHHHHHHH CS
  PF13174.1 17 deAlealerlik 28
               deA+ ++er i+
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIE 13
               89999***9986 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.05
               HHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealer 25
               la ++  +g++deA  ++er
  MMETSP0890-20130614|473_1 33 LAALLTYQGKYDEATPLYER 52
               555555567******99998 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00016
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               + al++ ++g++deA+ +++r i+
  MMETSP0890-20130614|473_1 74 NTALLLMAQGKYDEAKPLFQRAIE 97
               6789999999***********997 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0061       4.4       4      26 .]      30      52 ..      27      52 .. 0.91
   2 !   11.7   0.0   0.00034      0.24       3      26 .]      71      94 ..      69      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0061
               H---HHHHHH-------HHHHHT CS
  PF07721.9  4 llaLArallalGdldeAraller 26
               l++LA +l  +G +deA  l er
  MMETSP0890-20130614|473_1 30 LSNLAALLTYQGKYDEATPLYER 52
               789**************999887 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00034
               HH---HHHHHH-------HHHHHT CS
  PF07721.9  3 allaLArallalGdldeAraller 26
               +l++ A +l a+G +deA  l++r
  MMETSP0890-20130614|473_1 71 TLSNTALLLMAQGKYDEAKPLFQR 94
               78999*************988765 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1     0.005       3.6      18      34 ..      40      56 ..       1      61 [. 0.65
   2 !    6.6   0.0    0.0084       6.1       6      34 ..      70      98 .]      67      98 .] 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.005
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +gky+eA  lY+ +l++
   MMETSP0890-20130614|473_1 40 QGKYDEATPLYERSLNI 56
                46*********999987 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0084
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF04212.13  6 lelikkAveaDeagkyeeAlelYkeAlel 34
                  l ++A+    +gky+eA  l + A+e+
   MMETSP0890-20130614|473_1 70 TTLSNTALLLMAQGKYDEAKPLFQRAIEI 98
                5667777777789*************986 PP

>> PF02036.12  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.075        54      53      86 ..      23      56 ..       7      58 .. 0.85
   2 !   12.6   0.0   0.00016      0.11      52      86 ..      64      98 .]      58      98 .] 0.90

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.075
  PF02036.12 53 kadvtlslsladlleladgklnptkafmqgkLki 86
                 +dv ++ls  + l   +gk++  + +  + L i
   MMETSP0890-20130614|473_1 23 HPDVAIRLSNLAALLTYQGKYDEATPLYERSLNI 56
                79*******99999999*****999999999987 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00016
  PF02036.12 52 ekadvtlslsladlleladgklnptkafmqgkLki 86
                  +dv  +ls  +ll +a+gk++  k ++q+ ++i
   MMETSP0890-20130614|473_1 64 NHPDVATTLSNTALLLMAQGKYDEAKPLFQRAIEI 98
                479***************************98765 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   4.2e-05      0.03      18      94 ..       2      88 ..       1      96 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.2e-05
  PF12688.2 18 akAvplYrrAlaaG..Lagarrrratiql...aSsLRnlGrveeslalleaelaea....pgdeld.dalaaflALaLssagrerea 94
               ++A plY+rA++ G  + g +++ + i l   a+ L   G+ +e+  l e+ l+      + +  d +++   +AL L+++g+ +ea
  MMETSP0890-20130614|473_1  2 DEAKPLYERAIEIGerILGPNHPDVAIRLsnlAALLTYQGKYDEATPLYERSLNISeqklGPNHPDvATTLSNTALLLMAQGKYDEA 88
               79**********995556899999999752226788899*********999876320011223333144456789******999988 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0028         2       6      31 ..      32      55 ..      29      59 .. 0.76
   2 ?    6.3   0.0     0.011       7.7      13      25 ..      81      93 ..      76      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0028
               HHHHHHHHTT-HHHHHHH..HHHHHH CS
  PF07720.7  6 slAaefynkkkyqeArelfsYallai 31
                lAa +  ++ky+eA  l  Y+ + +
  MMETSP0890-20130614|473_1 32 NLAALLTYQGKYDEATPL--YERSLN 55
               577777789******999..765555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.011
               HTT-HHHHHHH.. CS
  PF07720.7 13 nkkkyqeArelfs 25
               +++ky+eA  lf+
  MMETSP0890-20130614|473_1 81 AQGKYDEAKPLFQ 93
               79******98887 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.026        19     147     169 ..      30      52 ..       5      62 .. 0.82
   2 ?    8.5   0.0    0.0021       1.5     144     170 ..      69      95 ..      54      98 .] 0.83

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.026
  PF11846.3 147 irrlalalallGkeeeArdamae 169
                + +la +l+++Gk +eA+ + ++
  MMETSP0890-20130614|473_1  30 LSNLAALLTYQGKYDEATPLYER 52 
                5689*************876665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0021
  PF11846.3 144 pavirrlalalallGkeeeArdamaea 170
                ++++ ++al+l+ +Gk +eA+ + ++a
  MMETSP0890-20130614|473_1  69 ATTLSNTALLLMAQGKYDEAKPLFQRA 95 
                57899***************8777766 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0047       3.4      11      67 ..       8      70 ..       5      73 .. 0.81
   2 ?    8.9   0.0    0.0017       1.2       8      57 ..      40      97 ..      33      98 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0047
  PF13371.1 11 ferALavverllll.aPddpyerRDrGlllaqlgclaaAaedLeafl.....elcpdapdael 67
               +erA+++ er+l   +Pd +  +   + ll  +g + +A   +e+ l     +l p++pd+++
  MMETSP0890-20130614|473_1  8 YERAIEIGERILGPnHPDVAIRLSNLAALLTYQGKYDEATPLYERSLniseqKLGPNHPDVAT 70
               7899999999987756666667789999*******************7777767778888765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0017
  PF13371.1  8 eedferALavverllll........aPddpyerRDrGlllaqlgclaaAaedLeafle 57
               ++++++A   +er+l +        +Pd +  +   +lll+ +g + +A   +++++e
  MMETSP0890-20130614|473_1 40 QGKYDEATPLYERSLNIseqklgpnHPDVATTLSNTALLLMAQGKYDEAKPLFQRAIE 97
               6778888888888888888888888999999999***************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 355.82
//
Query:       MMETSP0890-20130614|470_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   43.7   0.0    9.4e-11   41.8   0.0    1.9  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    0.00015   21.5   0.0       0.21   11.2   0.0    2.4  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.026   14.4   0.0        3.8    7.3   0.0    2.2  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
       0.05   13.4   0.0       0.11   12.4   0.0    1.6  1  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   2.8e-14   9.4e-11       2      70 ..      22     103 ..      21     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 2.8e-14
                 EEEE---HHHHHHHHHHHHTT.............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklg.............kkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsa 70 
                  v+ GGG +++ElA++l++++              kV vie+++++l+ + +e ++i q+ le+ g++++lnt v+e+ +s+
   MMETSP0890-20130614|470_1  22 FVICGGGPTAIELAGELSDFNndikarfpklesmPKVIVIEAAPNILPPFSQEQRAIAQETLENAGVQFILNTFVKEVSHSS 103
                 599**************555555555555555545*******************************************9776 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00054       1.8       3     124 ..      23     132 ..      21     146 .. 0.73
   2 !   11.2   0.0   6.3e-05      0.21     172     198 ..     147     180 ..     138     182 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00054
                EEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH...HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B---- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF07992.9   3 viiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreelee.lal...kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtl 124
                vi GgGp +++ a +l +++ ++      +        +pk + +e+a+   +l + +++     ++ le+ag+++ l++ v ++ + s        ++ + +++k   i+++ +v A G + + +
  MMETSP0890-20130614|470_1  23 VICGGGPTAIELAGELSDFNNDIKAR--FP----KLESMPKVIVIEAAPN--ILPPfSQEqraIAQETLENAGVQFILNTFVKEVSHSSV-------TLFDRKEEKSYNIPCGIVVWAAGTT-TLP 132
                89999999999999999777777665..22....3345777777777665..4555444467755666899*****99999999977766.......456667788999***********87.333 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6.3e-05
                SSSSBBE-TTSBC.......SSTTEEE---TCEE CS
                xxxxxxxxxxxxx.......xxxxxxxxxxxxxx RF
  PF07992.9 172 prggivVdeylrt.......svpgiyaiGDvaeg 198
                ++g+i Vd +lr           ++ya+GD+a++
  MMETSP0890-20130614|470_1 147 EKGKIAVDQWLRLnfdkehhAFGDVYALGDCAHI 180
                789*********95555555599*********76 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0011       3.8     160     193 ..      12      45 ..       3      52 .. 0.80
   2 ?    4.9   0.0     0.006        20      82     162 ..      73     159 ..      61     189 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
  PF13738.1 160 lepedlkgkrvvVvGgghsAidallnLldlgqkl 193
                +++e+ +  ++v+ Ggg +Ai+ + +L d   ++
  MMETSP0890-20130614|470_1  12 DQEERRRLLTFVICGGGPTAIELAGELSDFNNDI 45 
                55555556799****************9987776 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.006
  PF13738.1  82 eeisayledvarrlglkvrlstrvteveregdr.fevrvtdgrevrakalvlatgavskpktlglpg.....sadkeavhleevlep 162
                +e +a  ++ +++ g+++ l+t v+ev++ + + f  + +++ ++ +  +v+a g++  p   ++ +      ++k  ++++++l+ 
  MMETSP0890-20130614|470_1  73 QEQRAIAQETLENAGVQFILNTFVKEVSHSSVTlFDRKEEKSYNIPCGIVVWAAGTTTLPFIQNILSklpesGKEKGKIAVDQWLRL 159
                5566778899999999999********9998766777777767888*********99999888766667763234466888888765 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.2e-05      0.11       1      58 [.      22      86 ..      22      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.2e-05
                EEEE---HHHHHHHCCCHH.--..............EEEEES-HHHHHHHHH---EEEE--TTSHHHHHHT CS
  PF02254.13  1 iiiiGlGrvGrslaeeLre.ge............kdvvvidkdeerveelreeglevvvgdatdeevLeea 58
                ++i+G G ++ +la eL++ ++            ++v+vi+  ++ +   ++e        a  +e+Le+a
   MMETSP0890-20130614|470_1 22 FVICGGGPTAIELAGELSDfNNdikarfpklesmPKVIVIEAAPNILPPFSQEQ------RAIAQETLENA 86
                79*****************8889***9999999977999999998877766554......45555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.85
# Mc/sec: 792.21
//
Query:       MMETSP0890-20130614|477_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.13   12.3   0.0    1.1  1  PF05304.7 Protein of unknown function (DUF728)
       0.11   12.6   0.1       0.16   12.0   0.1    1.4  1  PF10791.4 Mitochondrial F1-F0 ATP synthase subunit F of fungi


Domain annotation for each model (and alignments):
>> PF05304.7  Protein of unknown function (DUF728)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.13      29      80 ..      28      78 ..      20      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.9e-05
  PF05304.7 29 qladkvdvkrkceekncGwfvaiivrddtvevyfccGrkhlekvksknskkk 80
               ++++ + +k k +e   G++ +i    +++e yfc Gr h+ + k k +k  
  MMETSP0890-20130614|477_1 28 YVSKNYMLKDKMAEPVVGFMLTIGTVGYFIE-YFCLGRYHVAHKKEKIAKAL 78
               68899999***************99999998.9********98887777655 PP

>> PF10791.4  Mitochondrial F1-F0 ATP synthase subunit F of fungi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.4e-05      0.16      58      91 ..      28      60 ..      10      67 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
  PF10791.4 58 rykakyfdgknasgkPlvhlllallllgYsleYy 91
                  ++y+  k+  ++P+v ++l++ ++gY +eY+
  MMETSP0890-20130614|477_1 28 YVSKNYM-LKDKMAEPVVGFMLTIGTVGYFIEYF 60
               3455666.89999********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 374.17
//
Query:       MMETSP0890-20130614|478_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 744.13
//
Query:       MMETSP0890-20130614|480_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:01.11
# Mc/sec: 755.61
//
Query:       MMETSP0890-20130614|476_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       871  (0.0637068); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.52s 00:00:01.29 Elapsed: 00:00:00.98
# Mc/sec: 1244.64
//
Query:       MMETSP0890-20130614|479_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.56s 00:00:01.12 Elapsed: 00:00:00.82
# Mc/sec: 1206.95
//
Query:       MMETSP0890-20130614|481_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-23   81.8   0.1    8.5e-13   47.6   0.1    2.4  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    6.3e-20   70.8   0.0    5.3e-10   39.0   0.1    2.4  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.8e-15   56.3   0.0    1.3e-06   27.9   0.1    2.3  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0037   16.9   0.6       0.12   12.1   0.0    3.1  3  PF08777.6  RNA binding motif
  ------ inclusion threshold ------
        1.3    7.2  21.5        1.6    6.9  14.9    1.2  1  PF10243.4  Microtubule-binding protein MIP-T3


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   3.1e-16   8.5e-13       1      63 [.     164     226 ..     164     232 .. 0.93
   2 !   31.8   0.0   2.7e-11   7.3e-08       1      65 [.     254     313 ..     254     314 .. 0.95

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 3.1e-16
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEB CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkk 63 
                 +fV+ L   ++e++Lk +F+k+G+++++ ++rd  t+r+kgfa+Ve+++ e++  +l  lng +
   MMETSP0890-20130614|481_1 164 VFVSQLVMKANEKQLKSFFEKIGKVKDVIMIRDkYTNRHKGFAYVEMADLESVPMVLM-LNGVE 226
                 7***************************************************999999.99866 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2.7e-11
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBET CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklg 65 
                 l ++ L+p ++e++L +++s+fG+i +i+lv+         a+V++   +da++A  +l g +lg
   MMETSP0890-20130614|481_1 254 LLIEHLHPKISENDLNTVLSPFGEIDEIELVPG-----SQQAYVTYVHADDATQAATRLTGIELG 313
                 57899***************************7.....*********************999875 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   1.9e-13   5.3e-10       1      57 [.     164     221 ..     164     230 .. 0.92
   2 !   29.3   0.0     2e-10   5.6e-07       2      62 ..     255     311 ..     254     315 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.9e-13
  PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalk 57 
                ++v+ l  +++e +l+ ff++ gkv++v ++r+k   r +gfA+ve+++ e++  +l 
  MMETSP0890-20130614|481_1 164 VFVSQLVMKANEKQLKSFFEKIGKVKDVIMIRDKYtNRHKGFAYVEMADLESVPMVLM 221
                7999999***************************98***************9877665 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 2e-10
  PF14259.1   2 yvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lv 62 
                 +  l+p+++e dl   +sp+g ++++++++      + +A+v++ +++dA +a ++l  + 
  MMETSP0890-20130614|481_1 255 LIEHLHPKISENDLNTVLSPFGEIDEIELVPG-----SQQAYVTYVHADDATQAATRLTgIE 311
                68889*************************96.....99***************99975565 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   4.8e-10   1.3e-06       1      44 [.     178     225 ..     178     232 .. 0.90
   2 !   26.2   0.0   1.8e-09   4.8e-06       1      54 [.     268     321 ..     268     323 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.8e-10
  PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngv 44 
                L+ +f+k Gkv+++++ r+k     +g+A+ve++++e+   ++  lngv
  MMETSP0890-20130614|481_1 178 LKSFFEKIGKVKDVIMIRDKytnrhKGFAYVEMADLESVPMVL-MLNGV 225
                6789*******************999***********998777.67775 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.8e-09
  PF13893.1   1 LyklfskfGkverikifrkkggqAfvefdtveaArkakeylngvkl.ygktLkve 54 
                L + +s+fG++ +i + + +  qA+v++  +++A +a + l g  l  g +++++
  MMETSP0890-20130614|481_1 268 LNTVLSPFGEIDEIELVPGS-QQAYVTYVHADDATQAATRLTGIELgAGIPIQIS 321
                56889*************99.********************99998444477776 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.24   6.6e+02      13      28 ..     173     188 ..     124     190 .. 0.70
   2 ?    1.4   0.1     0.092   2.5e+02      14      30 ..     174     190 ..     162     258 .. 0.81
   3 !   12.1   0.0   4.2e-05      0.12       9      58 ..     259     308 ..     254     316 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.24
                --HHHHHHHT-----E CS
  PF08777.6  13 lsredikelfsklgev 28 
                   +++k++f+k+g+v
  MMETSP0890-20130614|481_1 173 ANEKQLKSFFEKIGKV 188
                3456777777777776 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.092
                -HHHHHHHT-----EEE CS
  PF08777.6  14 sredikelfsklgevky 30 
                  +++k++f+k+g+vk 
  MMETSP0890-20130614|481_1 174 NEKQLKSFFEKIGKVKD 190
                56788888888888874 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 4.2e-05
                --SS--HHHHHHHT-----EEEE----------EEESS-..HHHH---TT CS
  PF08777.6   9 lnkelsredikelfsklgevkyvdfkegdkegevrFkedeaakkalekat 58 
                l+ ++s +d+ +++s +ge+  +++  g+++++v + ++++a +a   +t
  MMETSP0890-20130614|481_1 259 LHPKISENDLNTVLSPFGEIDEIELVPGSQQAYVTYVHADDATQAATRLT 308
                56788999*********************************999988776 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  14.9    0.0006       1.6     158     283 ..      20     146 ..       1     251 [. 0.51

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0006
  PF10243.4 158 eeekdrekekererkkaserekkekkkdsknkkkdkekekkkeksrksekgkeeerskdeerekeedkgkdretn.rakeeeeesrksseksrrssksekkaeseveaskseekktekeskaeaeqe 283
                +e+++r  e +  r + ++re ++ + +++++ +++++++   + r++++ ++ +  ++++re+ + +g  re++ r+k + +  r+ +e+s r s  +k+++  ++as  e+  ++ke+ +e   +
  MMETSP0890-20130614|481_1  20 KEDVSRSYEGDDRRRRSRSRERRRHRDGERERGEHRHRSRRHRRRRRRDDDDDYDYYRRRDREDYARRGRSRERRsRSKSSSQYYRHMRESSPRGSRRRKEEDEIPIASSGEKILNNKEVDVEKVPQ 146
                2333333333333333333333333333333333334444444444444444444444444444444444444443333333333333333333333333333333333333222222222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1098  (0.0803101); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.43s 00:00:01.30 Elapsed: 00:00:00.78
# Mc/sec: 1281.13
//
Query:       MMETSP0890-20130614|490_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-32  110.3   0.3    1.1e-21   76.4   0.0    1.4  2  PF13424.1  Tetratricopeptide repeat
    5.5e-28   95.8   2.7    4.5e-14   51.6   0.1    3.0  3  PF13374.1  Tetratricopeptide repeat
    2.5e-12   45.5   0.0    2.4e-06   26.8   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.9e-11   42.9   0.4      8e-06   25.1   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    4.5e-11   42.1   0.1    7.1e-11   41.4   0.1    1.4  1  PF13414.1  TPR repeat
    4.4e-10   38.5   0.3    0.00017   21.1   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    2.7e-09   37.3   0.1    2.5e-06   27.8   0.1    1.5  2  PF13432.1  Tetratricopeptide repeat
    2.1e-06   27.7   0.2     0.0097   16.3   0.0    2.4  2  PF13428.1  Tetratricopeptide repeat
    0.00017   21.4   0.8       0.68   10.1   0.1    2.8  2  PF13431.1  Tetratricopeptide repeat
    0.00042   19.7   0.1      0.015   14.9   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
     0.0014   18.6   0.0     0.0035   17.3   0.0    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0022   17.6   0.1        2.3    7.9   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   9.6e-13   1.1e-09      34      75 ..       2      44 ..       1      46 [. 0.94
   2 !   76.4   0.0   9.4e-25   1.1e-21       1      75 [.      11      86 ..      11      89 .. 0.98

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 9.6e-13
  PF13424.1 34 l.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               +  ++lg++hp +a+ lnnla l++ +g+ydeA +++e+++ei
  MMETSP0890-20130614|490_1  2 IgEKTLGPNHPAVATRLNNLAGLLRNQGKYDEAMPLYERSIEI 44
               55789************************************98 PP

  == domain 2    score: 76.4 bits;  conditional E-value: 9.4e-25
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               hp +at lnnla++lr +g+ydeA  lye+++e+  r+lg++hp +a+ lnnla l+  +++y+eA+++l+++l+i
  MMETSP0890-20130614|490_1 11 HPAVATRLNNLAGLLRNQGKYDEAMPLYERSIEIgERTLGPNHPLVATGLNNLAGLLTNQKKYKEARPLLQRSLAI 86
               8999**********************************************************************99 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0093        11      31      41 ..       2      12 ..       1      13 [. 0.84
   2 !   51.6   0.1   3.9e-17   4.5e-14       1      41 [.      14      54 ..      14      55 .. 0.98
   3 !   37.8   0.1   8.9e-13     1e-09       1      42 []      56      97 ..      56      97 .. 0.97

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0093
  PF13374.1 31 irrrllGddHP 41
               i ++ lG++HP
  MMETSP0890-20130614|490_1  2 IGEKTLGPNHP 12
               66899*****9 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 3.9e-17
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
               +a+ lnnLA +lr++g+y+eA +l+e++ +i +r lG++HP
  MMETSP0890-20130614|490_1 14 VATRLNNLAGLLRNQGKYDEAMPLYERSIEIGERTLGPNHP 54
               799*************************************9 PP

  == domain 3    score: 37.8 bits;  conditional E-value: 8.9e-13
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +l ++++y eA++l++++lai  + l++ HP+
  MMETSP0890-20130614|490_1 56 VATGLNNLAGLLTNQKKYKEARPLLQRSLAILVAKLPPQHPH 97
               6888*************************************6 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.1e-09   2.4e-06       2      32 ..      18      48 ..      18      52 .. 0.88
   2 !   16.9   0.0   2.9e-06    0.0033       2      29 ..      60      87 ..      59      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.1e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
               l+nLa l +++g+y++A  lyer++++ +  
  MMETSP0890-20130614|490_1 18 LNNLAGLLRNQGKYDEAMPLYERSIEIGERT 48
               89*********************99887655 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 2.9e-06
  PF13176.1  2 llnLarlysrlgdyekAielyeraLalt 29
               l+nLa l +++ +y++A  l++r+La+ 
  MMETSP0890-20130614|490_1 60 LNNLAGLLTNQKKYKEARPLLQRSLAIL 87
               89*********************99875 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     7e-09     8e-06       4      30 ..      18      44 ..      15      46 .. 0.95
   2 !   16.4   0.0     4e-06    0.0045       2      30 ..      58      86 ..      57      87 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7e-09
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+nl+ +++++gkydeA   ye+ +e+
   MMETSP0890-20130614|490_1 18 LNNLAGLLRNQGKYDEAMPLYERSIEI 44
                89***********************98 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                  l+nl+ ++ +++ky+eA    ++ L +
   MMETSP0890-20130614|490_1 58 TGLNNLAGLLTNQKKYKEARPLLQRSLAI 86
                579**********************9986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   6.2e-14   7.1e-11       3      67 ..      15      86 ..      13      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 6.2e-14
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               A  l++l+  l ++g+ydeA  +ye+++e+      pn++     ++nlA ++ ++  +y+eA+  ++++l++
  MMETSP0890-20130614|490_1 15 ATRLNNLAGLLRNQGKYDEAMPLYERSIEIGertlgPNHPLvatGLNNLAGLLTNQK-KYKEARPLLQRSLAI 86
               6789*************************8444444**988888***********86.8**********9986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-07   0.00017       4      30 ..      18      44 ..      15      47 .. 0.92
   2 !   16.0   0.0   6.5e-06    0.0075       2      30 ..      58      86 ..      57      87 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.5e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                l+nl+ +++++g+y+eA  ++e+++e+
   MMETSP0890-20130614|490_1 18 LNNLAGLLRNQGKYDEAMPLYERSIEI 44
                89***********************97 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 6.5e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                 +l+nl+ ++ ++++y+eA+ +++++l++
   MMETSP0890-20130614|490_1 58 TGLNNLAGLLTNQKKYKEARPLLQRSLAI 86
                689***********************986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.8e-05     0.089      28      59 ..      12      48 ..       8      54 .. 0.70
   2 !   27.8   0.1   2.2e-09   2.5e-06       3      62 ..      21      93 ..      19      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.8e-05
  PF13432.1 28 PeaaeallllaeallrlgrldeAaallraal.....a 59
               P  a  l +la +l  +g++deA  l+++ +      
  MMETSP0890-20130614|490_1 12 PAVATRLNNLAGLLRNQGKYDEAMPLYERSIeigerT 48
               6667777888888888888888888888877454444 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 2.2e-09
  PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaP 62
               lA +l ++G+ydeA +++e+ ++          P+ a  l +la +l  +++++eA+ ll++ l     +l P
  MMETSP0890-20130614|490_1 21 LAGLLRNQGKYDEAMPLYERSIEIGertlgpnhPLVATGLNNLAGLLTNQKKYKEARPLLQRSLailvaKLPP 93
               8999**************99999999*******************************8888888566655555 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.5e-06    0.0097       6      35 ..      20      54 ..      14      60 .. 0.76
   2 !    9.8   0.0     0.001       1.2       4      29 ..      60      85 ..      56      96 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.5e-06
  PF13428.1  6 alarallalGdpdeAiallrrala.....laPdda 35
                la +l+++G +deA+ l++r ++     l+P+++
  MMETSP0890-20130614|490_1 20 NLAGLLRNQGKYDEAMPLYERSIEigertLGPNHP 54
               79********************9844444455555 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.001
  PF13428.1  4 llalarallalGdpdeAiallrrala 29
               l  la +l ++  ++eA+ ll+r la
  MMETSP0890-20130614|490_1 60 LNNLAGLLTNQKKYKEARPLLQRSLA 85
               5679*******************987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0014       1.6      16      32 ..      18      34 ..       8      35 .. 0.93
   2 !   10.1   0.1    0.0006      0.68       1      33 [.      37      77 ..      37      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0014
  PF13431.1 16 ynnLAelllnnGdleeA 32
               +nnLA ll n+G+++eA
  MMETSP0890-20130614|490_1 18 LNNLAGLLRNQGKYDEA 34
               68*************99 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0006
  PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
               lye+++e+      Pn+   a  +nnLA ll n+++++eA+
  MMETSP0890-20130614|490_1 37 LYERSIEIGertlgPNHplvATGLNNLAGLLTNQKKYKEAR 77
               5788888844555577766688899***************8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.015       4      30 ..      18      44 ..      14      48 .. 0.92
   2 ?    3.0   0.0     0.083        95       4      28 ..      60      84 ..      57      86 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++r+ G+yd+A+  +e+ +e+
  MMETSP0890-20130614|490_1 18 LNNLAGLLRNQGKYDEAMPLYERSIEI 44
               689999******************998 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.083
               TTT---HHHHTT-HHHHHHHHH--- CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekal 28
               ++nl+ ++ + ++y++A   l++ l
  MMETSP0890-20130614|490_1 60 LNNLAGLLTNQKKYKEARPLLQRSL 84
               7899999999*******98887766 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.1e-06    0.0035      30      83 ..      20      82 ..       7      83 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.1e-06
               HHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
  PF12895.2 30 alAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83
               +lA  l ++g+y++A+ l+++        l ++++  +     lA  l  ++ky+eA+ +L++
  MMETSP0890-20130614|490_1 20 NLAGLLRNQGKYDEAMPLYERsieigeRTLGPNHPLVATglnNLAGLLTNQKKYKEARPLLQR 82
               568899999999999999999988887777777766666545567888899999999999886 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.002       2.3      13      27 ..      27      39 ..      21      44 .. 0.89
   2 !    7.8   0.0    0.0023       2.6      13      30 ..      69      85 ..      63      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.002
               HTT-HHHHHHH..HH CS
  PF07720.7 13 nkkkyqeArelfsYa 27
               n++ky+eA  l  Y+
  MMETSP0890-20130614|490_1 27 NQGKYDEAMPL--YE 39
               8*******999..64 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0023
               HTT-HHHHHHH..HHHHH CS
  PF07720.7 13 nkkkyqeArelfsYalla 30
               n+kky eAr l++ + la
  MMETSP0890-20130614|490_1 69 NQKKYKEARPLLQ-RSLA 85
               8********9999.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.91
# Mc/sec: 258.07
//
Query:       MMETSP0890-20130614|484_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-34  118.9   0.0    2.2e-34  118.4   0.0    1.2  1  PF00551.14 Formyl transferase
    0.00054   19.5   0.0     0.0012   18.3   0.0    1.5  1  PF13740.1  ACT domain
     0.0039   16.5   0.0      0.011   15.1   0.0    1.8  1  PF01842.20 ACT domain


Domain annotation for each model (and alignments):
>> PF00551.14  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   4.8e-38   2.2e-34       2     181 .]     142     318 ..     141     318 .. 0.95

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 4.8e-38
                 EEEEEE-----HHHHHHHHHHCTS-EE-EEEEEES-TT----HHHHHHH-EEEEB-GCGSCSHHHCHHHHHHHHHCG--SEEEES---S---HHHHCCT---EEEEESS-TTTTB---HHHHHHH----EE-EEEEE--SS----EEEEEEEEE--TT--HHHHHHHCCCCHHHHHHHHH CS
  PF00551.14   2 kivvlisgtgsnlqalldalrkgnleaeivlvvtnkdkaaglekaeqasiptevfeekkltprsqseselakslaelkadlivlagygkllpkellqafplkilniHpSlLPrfrGaaaiqraleaGdketGvtvhfvdeelDtGpilaqkkveviaedtseelenrvaeaehkalveal 181
                 ++ +++s+  + l ++l + + g+l+ ei l+++n+++++++     ++i++evf+  k t+r+q  +e  + ++ l+ d+ivla y++++++e+ ++++++++niH+S LP+f Ga++++ra e+G+k +G+t h+++ elD+Gpi+ q+ v++ + d++++l ++ + +e+++l++al
   MMETSP0890-20130614|484_1 142 RMCIMVSKYEHVLWDILLRHKAGELDCEIPLIISNHPDLKHIGD--IFGIRFEVFKITKETKREQELKE-IELMKDLEIDFIVLARYMQIISDEFCAEYENRVINIHHSPLPAFIGAKPYHRAHERGVKLIGATAHYATAELDEGPIIEQNVVPASHRDSVQDLIRKGRAVEQRVLLTAL 318
                 788999**********************************8875..699******99998888666665.5799*****************************************************************************************************99875 PP

>> PF13740.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.7e-07    0.0012       5      36 ..      60      91 ..      58     108 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.7e-07
  PF13740.1  5 itvtGpdrpGltasLtevlaefgcnildsrqa 36
               i v+G+dr G+  +L+++l+ +gc+i   +q 
  MMETSP0890-20130614|484_1 60 IKVYGMDREGIDLALSQLLHGHGCSIEHAEQH 91
               89*************************99996 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-06     0.011       3      40 ..      60     100 ..      58     124 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-06
                 EEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS....E CS
  PF01842.20   3 levgvpDrPGlLaevfgaLadrgiNidsisqstsgdk...a 40 
                 + v+  Dr G+  +++++L  +g++i++++q++++d+    
   MMETSP0890-20130614|484_1  60 IKVYGMDREGIDLALSQLLHGHGCSIEHAEQHRDRDEnifF 100
                 667777777777899*********************55441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.92
# Mc/sec: 880.40
//
Query:       MMETSP0890-20130614|487_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.0   0.0     0.0052   16.5   0.0    1.7  1  PF03762.12 Vitelline membrane outer layer protein I (VOMI)
  ------ inclusion threshold ------
       0.11   11.9   0.1        1.2    8.6   0.0    2.2  2  PF08982.6  Domain of unknown function (DUF1857)


Domain annotation for each model (and alignments):
>> PF03762.12  Vitelline membrane outer layer protein I (VOMI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.6e-07    0.0052      87     176 ..     182     362 ..     174     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.6e-07
                 -EEEEEEEE----------EEEEEEEE...................................................TTS-EE-----.........................................................----------......---B---EEEEES----.TT-EEEEEEEEE CS
  PF03762.12  87 viigiqlkvefeklkddagitnlaakCgrpqddr............................................strrrllerkk.........................................................ndskygyWrsiqfCpkgsvviGitekiesekgk.ddtglnnvglrC 176
                  iig+++ + +     ++ itn++  C++p dd+                                            +         +                                                         n+s+ g+ +++++    + viG++ k e+++    ++ ++n+++ C
   MMETSP0890-20130614|487_1 182 EIIGFKIASATIGYIAEVKITNFKSPCNEPADDKnlcngtsgffgyydlphwnitvegdssydfnpdepsmlmkvsadD---------NldtdvdteqevtftieapnngtlsfdweysteefdgrgpdkdpfsviigddvhvlteNNSTSGTFSREEI--FANQVIGFNLKSEDSRAGsANIKITNFNAPC 362
                 5777777776665558899***************999999999999999988777777766666666665555554440.........144555555666677777777888888888888888888888999999999999999988999***99996..67889*******9999988**********99 PP

>> PF08982.6  Domain of unknown function (DUF1857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.042   2.9e+02      81     108 ..      80     107 ..      62     116 .. 0.86
   2 ?    8.6   0.0   0.00018       1.2      73     109 ..     258     294 ..     252     332 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.042
  PF08982.6  81 qedgssltiiieepesgaLflrfvyelr 108
                + dg+s+  +i+ ++sg  ++ f y + 
  MMETSP0890-20130614|487_1  80 SLDGESIMYTIQVQKSGYFSFDFEYTTD 107
                66899********************986 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00018
  PF08982.6  73 eesrvefeqedgssltiiieepesgaLflrfvyelrl 109
                ++++ +++ ++ +++t++ie p++g L++ + y ++ 
  MMETSP0890-20130614|487_1 258 ADDNLDTDVDTEQEVTFTIEAPNNGTLSFDWEYSTEE 294
                5666777889999********************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.63
# Mc/sec: 1384.56
//
Query:       MMETSP0890-20130614|497_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.8   1.9       0.12   12.5   1.3    1.1  1  PF13476.1  AAA domain
       0.15   12.2   1.3       0.52   10.5   0.4    1.9  2  PF00435.16 Spectrin repeat
       0.19   11.4   0.9        0.9    9.2   0.4    1.8  2  PF08644.6  FACT complex subunit (SPT16/CDC68)


Domain annotation for each model (and alignments):
>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   2.7e-05      0.12      96     172 ..      47     142 ..      12     155 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.7e-05
  PF13476.1  96 ektkkkgkkvkkeilelleideleqfleellksdkeilpliaylgqer.......ekekfklkekkk............rleelekeleeledeke 172
                e+ +k  +k+++ ++ ++++d+l ++ eell  +k  l+++++++ ++       ++e+ +++ ++k            +++e+++++ ++ de  
  MMETSP0890-20130614|497_1  47 ELMSKLDEKIQFYKDGQCSVDDLVDIREELLATQKHYLKQLSFYEGNNdqvekiaFDEELRRSASSKtieeralhkyvlQMREINDAISDKLDELM 142
                44566778889999999999******************9999999988777766433333333333356667666766677777777666666655 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00011      0.52      10      81 ..      45     118 ..      43     121 .. 0.81
   2 ?    0.4   0.0      0.16   7.2e+02       3      24 ..     120     141 ..     118     156 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHCCCH.SSSHHHH.HHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHTTSTTHHHHHHH CS
  PF00435.16  10 adeleeWieekeellssedl.gkdleev.qallkkhkaleaelaaqqervealn..elaeklideghsaseeieer 81 
                 a+el++ ++ek ++ ++ ++   dl ++ ++ll + k + ++l+ ++++ ++++  ++ e+l  +   +s+ ieer
   MMETSP0890-20130614|497_1  45 AEELMSKLDEKIQFYKDGQCsVDDLVDIrEELLATQKHYLKQLSFYEGNNDQVEkiAFDEELRRS--ASSKTIEER 118
                 899**************99998888877357888********************66666777333..466666665 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHH CS
  PF00435.16   3 lqqfaqdadeleeWieekeell 24 
                 l+++  +++e+++ i++k  +l
   MMETSP0890-20130614|497_1 120 LHKYVLQMREINDAISDKLDEL 141
                 6666667777777777664444 PP

>> PF08644.6  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.084   3.8e+02      84     115 ..      19      50 ..      14      61 .. 0.81
   2 ?    9.2   0.4    0.0002       0.9      42     110 ..      56     126 ..      50     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.084
  PF08644.6  84 fkeikelkkkvkkreaekkekedlveqekLvl 115
                f++ ++lk+++ ++++ k+ ++ ++  e+L+ 
  MMETSP0890-20130614|497_1  19 FRNYQSLKSSFYTKKSIKRSSAAVYPAEELMS 50 
                67788999999999999999999999999976 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0002
  PF08644.6  42 inFnvpgsaa...gkkeeaekedpeaifikeltfrskdskklsevfkeikelkkkvkkreaekkekedlveq 110
                i+F   g+ +     + ++e   ++++++k+l+f + +++++++++ + +el++++ ++  e++  ++ v q
  MMETSP0890-20130614|497_1  56 IQFYKDGQCSvddLVDIREELLATQKHYLKQLSFYEGNNDQVEKIAFD-EELRRSASSKTIEERALHKYVLQ 126
                6666666666321112223355599***************99888766.89999999999988877766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       793  (0.0580018); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.72
# Mc/sec: 525.87
//
Query:       MMETSP0890-20130614|500_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.32s 00:00:00.65 Elapsed: 00:00:00.52
# Mc/sec: 304.15
//
Query:       MMETSP0890-20130614|498_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-07   29.7   0.0    9.2e-07   28.7   0.0    1.6  1  PF08774.6 VRR-NUC domain


Domain annotation for each model (and alignments):
>> PF08774.6  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   6.7e-11   9.2e-07      30      99 ..     108     214 ..      67     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 6.7e-11
  PF08774.6  30 kgkealaklfrk...rglrsGvPDlilwlpegkrp....................................ifllvEvKgpgdklsdkQrawldrlarsgvkvevcrva 99 
                +g+ ala + r+   ++   G+PDl +++  ++ +                                     +++vEvK+  d+l+ +Q+ wl+ l+++ ++++v+rv+
  MMETSP0890-20130614|498_1 108 LGGPALAGIIRRmlkKSALNGFPDLTCLKAISQDKkeditktllpfssfkpaskskkvltekliipegtefHIRFVEVKA-TDHLQSNQTLWLNYLRSQ-IDAGVLRVK 214
                5777889999999996666*********6555544567777888888888888888999999999999999********8.59**************99.*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 742.21
//
Query:       MMETSP0890-20130614|493_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-08   33.6   8.0      0.025   15.0   0.0    6.5  5  PF13428.1 Tetratricopeptide repeat
    7.7e-08   32.6   4.7    0.00095   19.6   0.1    4.7  4  PF13432.1 Tetratricopeptide repeat
      5e-06   26.3   3.9    0.00055   19.6   0.5    3.2  3  PF05843.9 Suppressor of forked protein (Suf)
    0.00032   20.1   1.9      0.013   14.9   0.1    3.6  3  PF13414.1 TPR repeat
    0.00091   19.1   0.9        2.2    8.5   0.0    4.7  5  PF13431.1 Tetratricopeptide repeat
     0.0032   17.2   0.2       0.04   13.7   0.0    3.0  2  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.42   10.4   3.4        1.8    8.4   0.0    3.9  5  PF13176.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.075   1.5e+02       6      44 .]      37      76 ..      33      76 .. 0.83
   2 ?    3.8   0.0     0.053     1e+02      23      41 ..     100     118 ..      91     121 .. 0.89
   3 !   15.0   0.0   1.3e-05     0.025       2      42 ..     344     386 ..     343     388 .. 0.84
   4 ?    4.6   0.2     0.029        57       7      36 ..     385     415 ..     381     425 .. 0.81
   5 !    7.0   0.2     0.005       9.8      15      44 .]     468     497 ..     455     497 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.075
  PF13428.1  6 alara.llalGdpdeAiallrralalaPddaealllLarl 44
                l++a  la+++ d+ +  ++  l+++P    ++  +a+l
  MMETSP0890-20130614|493_1 37 SLVEAkALANENIDRVVPTFEGFLRRFPLCFGYWSKYADL 76
               56666457899*****************999999888875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.053
  PF13428.1  23 llrralalaPddaealllL 41 
                l++ral++ P + e+++++
  MMETSP0890-20130614|493_1 100 LYERALEQVPLSVELWTAY 118
                79**************998 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.3e-05
  PF13428.1   2 eallalara.llalGdpdeAiallrralala.PddaealllLa 42 
                e +l +a   +  ++d+d Ai++l+ral ++ P+++++   La
  MMETSP0890-20130614|493_1 344 EFWLSYAFWkYHSRNDFDLAIDVLQRALTKFlPKRPDIMETLA 386
                678888877578899*************997699999988777 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.029
  PF13428.1   7 larallalGdpdeAiallrralala.Pddae 36 
                la +l+a+G+ +eA++++ ++ + a Pd a+
  MMETSP0890-20130614|493_1 385 LALFLEAAGRCEEARQVYIDIFEFAkPDAAR 415
                899**************99888754355554 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.005
  PF13428.1  15 GdpdeAiallrralalaPddaealllLarl 44 
                 d+ +A+  l+ a++  Pdd++++l+  +l
  MMETSP0890-20130614|493_1 468 RDVPAARVTLDYAISNRPDDPRLWLARIQL 497
                677789999999*************98876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.036        70       7      42 ..      43      78 ..      41      85 .. 0.84
   2 ?   -1.3   0.0       1.8   3.5e+03      20      34 ..     100     115 ..      91     117 .. 0.71
   3 !   19.6   0.1   4.9e-07   0.00095      10      63 ..     357     412 ..     354     414 .. 0.89
   4 !    6.9   0.1    0.0046       8.9       7      44 ..     464     501 ..     463     527 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.036
  PF13432.1  7 llraGdydeAlaaleaalalaPeaaeallllaeall 42
               +l++ + d+ ++ +e +l+++P++  ++  +a++ +
  MMETSP0890-20130614|493_1 43 ALANENIDRVVPTFEGFLRRFPLCFGYWSKYADLQA 78
               5677777777889*******************9977 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.8
  PF13432.1  20 l.eaalalaPeaaeal 34 
                l e+al++ P+ +e +
  MMETSP0890-20130614|493_1 100 LyERALEQVPLSVELW 115
                4488888888887765 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 4.9e-07
  PF13432.1  10 aGdydeAlaaleaalala.PeaaeallllaeallrlgrldeAa.allraalalaPd 63 
                ++d+d A+++l++al ++ P+ ++++  la +l ++gr +eA+  +++ +  + Pd
  MMETSP0890-20130614|493_1 357 RNDFDLAIDVLQRALTKFlPKRPDIMETLALFLEAAGRCEEARqVYIDIFEFAKPD 412
                579****************************************7777777666665 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0046
  PF13432.1   7 llraGdydeAlaaleaalalaPeaaeallllaeallrl 44 
                +l  +d+ +A+  l+ a+ + P++++ +l++ ++ +++
  MMETSP0890-20130614|493_1 464 ALVIRDVPAARVTLDYAISNRPDDPRLWLARIQLEMMQ 501
                667799*************************9999887 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.5   2.8e-07   0.00055      73     220 ..     115     263 ..      87     324 .. 0.67
   2 ?    2.4   0.0     0.047        92      36      91 ..     344     400 ..     328     439 .. 0.68
   3 ?    3.6   0.0     0.021        41     106     136 ..     533     564 ..     467     578 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.8e-07
  PF05843.9  73 vlkYldy..LislnddnnaRvlFEkvltklskekeakelykkfikyeskfgdlssilkLekRmeelfpedskleqfvdRYklkdldpikkrelksetkqe..rdkallqkkee.qaasaesskkrkleeedsekkpdklqraegrqleqqkks 220
                  +Y  +  L+++n  + +R l+E++l  +  e+++ +l++ f+++e+  g  s + ++ +R   ++  +  ++++  ++kl +    k +el+++++++    k  ++ k +  a+s+e++ +r  +    ++  ++ q+ +  ++++q k+
  MMETSP0890-20130614|493_1 115 WTAYCAHvaLTEINS-QGMRQLYERALYYVGAERQSVPLWEAFLDFEASRGTPSTVCNVYRRGL-AVDTTGRIDELWRKFKLLTRC-YKISELIENHQETsaLLKRYKARK-QfDAESSEEEARRLKSMAGYSALEEQRQMEQLLFETEQAKN 263
                555665533566664.579****************************************98765.678889999999999987643.344444444333300333222222.12333333333433333333345555555553333333333 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.047
  PF05843.9  36 evYvasAllEyyiskdkkvAikIFelGlKkF.pedeefvlkYldyLislnddnnaRv 91 
                e +   A   y+  +d   Ai+++ ++l kF p+ ++ +     +L    + ++aR 
  MMETSP0890-20130614|493_1 344 EFWLSYAFWKYHSRNDFDLAIDVLQRALTKFlPKRPDIMETLALFLEAAGRCEEARQ 400
                6677889999******************99934444444444446655555555555 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.021
  PF05843.9 106 akelykkfikyeskfg.dlssilkLekRmeel 136
                  +++++++ +++ +  +++sil +++R++e 
  MMETSP0890-20130614|493_1 533 KLDIWSRYLYFAQAYAySVTSILDIKRRLAEF 564
                668************99***********9985 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1       0.2   3.8e+02      25      64 ..     100     139 ..      99     143 .. 0.61
   2 !   14.9   0.1   6.8e-06     0.013      13      60 ..     354     401 ..     342     405 .. 0.86
   3 ?    0.7   0.0      0.18   3.6e+02      26      43 ..     477     494 ..     469     508 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.2
  PF13414.1  25 ayekAleldpnnaelyynl.AlaylklgkdyeeAledyekA 64 
                +ye+Ale  p + el+ +  A++ l    + +  ++ ye+A
  MMETSP0890-20130614|493_1 100 LYERALEQVPLSVELWTAYcAHVALTEI-NSQGMRQLYERA 139
                5999***999999988554244444444.334444444444 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.8e-06
  PF13414.1  13 lfkegdydeAieayekAl.eldpnnaelyynlAlaylklgkdyeeAled 60 
                + +++d+d Ai+ +++Al +  p+ ++++  lAl ++  g+  eeA++ 
  MMETSP0890-20130614|493_1 354 YHSRNDFDLAIDVLQRALtKFLPKRPDIMETLALFLEAAGR-CEEARQV 401
                56799************94689******************5.7999875 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.18
  PF13414.1  26 yekAleldpnnaelyynl 43 
                ++ A++ +p+++ l++++
  MMETSP0890-20130614|493_1 477 LDYAISNRPDDPRLWLAR 494
                566999999999999876 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1     2e+03       2      19 ..      18      35 ..      17      35 .. 0.88
   2 ?    4.4   0.0     0.023        45       1      18 [.     100     117 ..     100     118 .. 0.92
   3 ?   -0.9   0.0       1.2   2.3e+03      12      33 ..     342     364 ..     331     365 .. 0.75
   4 !    8.5   0.0    0.0011       2.2       3      34 .]     368     400 ..     366     400 .. 0.88
   5 ?   -2.2   0.0         3   5.8e+03       5      17 ..     480     492 ..     477     494 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1
  PF13431.1  2 yekaleldPnnadaynnL 19
               ++k++  d  ++ +++ L
  MMETSP0890-20130614|493_1 18 LLKCISADEWDFLSWTKL 35
               68**********999876 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.023
  PF13431.1   1 lyekaleldPnnadaynn 18 
                lye+ale+ P +++++++
  MMETSP0890-20130614|493_1 100 LYERALEQVPLSVELWTA 117
                7**************987 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1.2
  PF13431.1  12 nadaynnLA.elllnnGdleeAe 33 
                +a+++  +A + +++++d++ A+
  MMETSP0890-20130614|493_1 342 YAEFWLSYAfWKYHSRNDFDLAI 364
                78999999944588899998886 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0011
  PF13431.1   3 ekaleld.PnnadaynnLAelllnnGdleeAeq 34 
                ++al +  P+ +d +  LA++l ++G+ eeA+q
  MMETSP0890-20130614|493_1 368 QRALTKFlPKRPDIMETLALFLEAAGRCEEARQ 400
                66777755***********************98 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 3
  PF13431.1   5 aleldPnnadayn 17 
                a+ + P+++ ++ 
  MMETSP0890-20130614|493_1 480 AISNRPDDPRLWL 492
                78899***99996 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.1e-05      0.04      15      71 ..     354     404 ..     342     411 .. 0.86
   2 ?   -1.3   0.0      0.95   1.9e+03       4      34 ..     416     446 ..     410     450 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.1e-05
  PF13424.1  15 lrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylek 71 
                ++   d+d A++ +++al+  l       p + +++  la  ++a+g+ +eA++ + +
  MMETSP0890-20130614|493_1 354 YHSRNDFDLAIDVLQRALTKfL-------PKRPDIMETLALFLEAAGRCEEARQVYID 404
                55889*************9944.......78899********************9965 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.95
  PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel 34 
                la++    a +  r++d    l+ +++ l +
  MMETSP0890-20130614|493_1 416 LAACCLKRAAFETRQHDVNATLAAFRTTLHI 446
                5778888999999999999999999998865 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         3   5.9e+03      21      29 ..     100     106 ..     100     112 .. 0.67
   2 ?   -3.2   0.2       4.6   9.1e+03      20      26 ..     134     140 ..     133     143 .. 0.72
   3 ?    8.4   0.0   0.00093       1.8       9      30 ..     354     373 ..     352     383 .. 0.82
   4 ?   -1.8   0.0       1.7   3.3e+03       5      22 ..     385     402 ..     384     407 .. 0.84
   5 ?   -2.6   0.0         3   5.8e+03      21      27 ..     517     523 ..     516     527 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3
  PF13176.1  21 lyeraLalt 29 
                lyeraL  +
  MMETSP0890-20130614|493_1 100 LYERAL--E 106
                699955..4 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.6
  PF13176.1  20 elyeraL 26 
                +lyeraL
  MMETSP0890-20130614|493_1 134 QLYERAL 140
                5899944 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00093
  PF13176.1   9 ysrlgdyekAielyeraLaltk 30 
                y +++d++ Ai++++r  altk
  MMETSP0890-20130614|493_1 354 YHSRNDFDLAIDVLQR--ALTK 373
                7899************..7774 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.7
  PF13176.1   5 LarlysrlgdyekAiely 22 
                La   ++ g+ e+A ++y
  MMETSP0890-20130614|493_1 385 LALFLEAAGRCEEARQVY 402
                66777889999***9998 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 3
  PF13176.1  21 lyeraLa 27 
                +yeraLa
  MMETSP0890-20130614|493_1 517 VYERALA 523
                79**665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.04u 0.47s 00:00:01.51 Elapsed: 00:00:00.90
# Mc/sec: 1602.90
//
Query:       MMETSP0890-20130614|501_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.76
# Mc/sec: 413.06
//
Query:       MMETSP0890-20130614|505_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-25   87.0   0.0      1e-22   80.2   0.0    2.1  2  PF04321.12 RmlD substrate binding domain
      7e-19   68.0   0.0    9.9e-19   67.5   0.0    1.2  1  PF01370.16 NAD dependent epimerase/dehydratase family
    0.00011   21.1   0.0      0.042   12.6   0.0    2.2  2  PF02719.10 Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.24   11.2   0.0    1.6  2  PF13460.1  NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0     3e-26     1e-22       2     199 ..      36     263 ..      35     273 .. 0.91
   2 !    4.7   0.0    0.0031        11     211     272 ..     309     371 ..     291     383 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 3e-26
                 EEEEE--------HHHHHH----EEEEE--TT.............T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---EEEEEEEGGG----.............-SS-B-TTS-----S----TTT---HHHHHH-SSEEEEEE-SEE--......---HHHHHHH-----SEEEEESS-B---EEHHHHHHHHHHHHHH CS
  PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre.............eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavgallihiSTdyVFdGe.............kkrpYeeddetaPlnvYGrtKlaGEqavlaanpkalivRtawvyge.....kgknfvktmlrlaaereelkvvaDqlgsPTsaedlAdvllallek 199
                 rilvtG nG ++ + +++l +eg++v  + r              +++l d e+ ++++ +  pdv++++AA     ++E++++ a++ n       A  a   +al+i++STd VF+G+             k+++ +  +e  P+n+YG++Kla E+ + ++ p+ +i+R + v+g      +  +f +++++ ++++ ++++  D + s  + ++  + + al++k
   MMETSP0890-20130614|505_1  36 RILVTG-NGYIAEHTIKRLLNEGYDVRYTYRGdggpplreevlgvCMNLRDVESCSTALWQSLPDVIIHTAAISSPAACEKDPDLAMETNCPIGFLEACFAVVPDALFIQLSTDIVFEGRddtskyykdggfdKESACAAIEEARPINMYGKSKLAFEKCLIESWPRLIILRLSNVLGPespytQSGKFTQWFINTLRTQGSVSLWYDEIRSFLHIDQFLSGICALIQK 263
                 799998.79999999999999*****99988889********************************************************87666667777888****************99999998888877777888899***********************************9888877789*********************99988888888888877776 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0031
                 E---B----HHHHHHHHHHH-----..EEEEE-GGGS--SS---SB--B--HHHHH------- CS
  PF04321.12 211 HlansgetswfdfAraifkelgadg.eevkpissaefptpakrPansvLdtekleaafgiklr 272
                 ++ + + +s+fd+++ i+++lg ++   + p+s +++  + + P + ++d+++++ +  ++l 
   MMETSP0890-20130614|505_1 309 NFGGPQPLSRFDVGKIIAARLGLTQeDALIPTSRSSITLSYPSPLDVAMDSANFQYILRVPLL 371
                 56677789***************998899***********************99988877765 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   2.9e-22   9.9e-19       1     227 [.      37     265 ..      37     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 2.9e-22
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT..EEEEEEEGGG---BSSSC.......B-TTS--......--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagv.krflfasSsevygkdaeqp.......ikEetpl......gplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgd 227
                 ilVtG +G+i  +++++ll++gy+ v +++r +  ++ ++  +v  v ++l d +++  ++ ++ pd++ih Aa s  +a   +dp   +e+n+ +    lea+++      f+++s++ v++  +++        ++ e+ +      +p++ Y+ +Kla+ek++ +       + iilrl+nv Gp  + +++ ++   +i+ ++++ +v l+   +++R fl+++    ++++++++  
   MMETSP0890-20130614|505_1  37 ILVTG-NGYIAEHTIKRLLNEGYD-VRYTYRGDGGPPLRE--EVLGVCMNLRDVESCSTALWQSLPDVIIHTAAIS-SPAACeKDPDLAMETNCPIG--FLEACFAVVPdALFIQLSTDIVFEGRDDTSkyykdggFDKESACaaieeaRPINMYGKSKLAFEKCLIESW----PRLIILRLSNVLGPESPYTQSGKFTQWFINTLRTQGSVSLWY--DEIRSFLHIDQFLSGICALIQKFA 265
                 89**9.******************.555555555544444..466789***************************9.66666699999999998765..69****7766999*********999855544666666544444425656677777**********876555....368**************************************9..89***************9999865 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.2e-05     0.042      52     106 ..      72     126 ..      55     152 .. 0.79
   2 !    6.4   0.0   0.00096       3.3     132     173 ..     178     212 ..     174     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
  PF02719.10  52 lkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvl 106
                 l+ e++ v  ++rd e++++al +  +dv++h+AA+    ++e+ p  a++tN  
   MMETSP0890-20130614|505_1  72 LREEVLGVCMNLRDVESCSTALWQSLPDVIIHTAAISSPAACEKDPDLAMETNCP 126
                 56677888999******************************************73 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00096
  PF02719.10 132 vnPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlg 173
                 ++P+n++G +K++ ek+l++          ++++ R  NVlg
   MMETSP0890-20130614|505_1 178 ARPINMYGKSKLAFEKCLIESWP-------RLIILRLSNVLG 212
                 68**************9986533.......446666666666 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-05      0.24       1      37 [.      37      72 ..      37     119 .. 0.79
   2 ?   -2.8   0.0       1.4   4.9e+03     118     150 ..     182     214 ..     168     226 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.9e-05
  PF13460.1  1 IaviGAtGktGrrivkellarghevtalvRnpsklpe 37
               I+v+G +G ++  ++k+ll++g++v+ + R +   p 
  MMETSP0890-20130614|505_1 37 ILVTG-NGYIAEHTIKRLLNEGYDVRYTYRGDGGPPL 72
               89999.************************9887664 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.4
  PF13460.1 118 keylrakaaaeelleasgldwtivrPaalfeae 150
                + y ++k a+e+ l +s+ +  i+r + + ++e
  MMETSP0890-20130614|505_1 182 NMYGKSKLAFEKCLIESWPRLIILRLSNVLGPE 214
                667789999999999999999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:01.00
# Mc/sec: 951.35
//
Query:       MMETSP0890-20130614|510_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   27.4   2.4    2.8e-06   26.8   1.6    1.3  1  PF00831.18 Ribosomal L29 protein
     0.0085   15.7   0.9       0.01   15.5   0.6    1.1  1  PF10482.4  Tumour-suppressor protein CtIP N-terminal domain
  ------ inclusion threshold ------
      0.041   13.4   2.8      0.042   13.4   1.9    1.1  1  PF14075.1  Ubinuclein conserved middle domain
      0.054   13.6   2.8      0.081   13.1   2.0    1.4  1  PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
        0.1   11.7   0.2       0.11   11.6   0.1    1.0  1  PF05827.7  Vacuolar ATP synthase subunit S1 (ATP6S1)
       0.16   10.6   3.9       0.16   10.6   2.7    1.0  1  PF00521.15 DNA gyrase/topoisomerase IV, subunit A
       0.27   11.2   3.2       0.33   10.9   2.2    1.2  1  PF10303.4  Protein of unknown function (DUF2408)


Domain annotation for each model (and alignments):
>> PF00831.18  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   1.6   1.4e-09   2.8e-06       5      58 .]      10      65 ..       7      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.4e-09
                TTSHHHHHHHHHHCHHHHHHHHHHHH.H-.--GGGCCHHHHHHHHHHHHHHHHHHH CS
  PF00831.18  5 relsdeeLkeklkelkkeLfnLRfqk.at.gqlenphkikevRkdIARilTvlnek 58
                 ++++e L+e+l++  +  f +R+ + ++ ++  + +++++++k+IA+i+  l ek
   MMETSP0890-20130614|510_1 10 ASMTVEKLEEELRATHNAVFAMRLEQmQSkRKEFKSSELRKLKKKIAQIMPYLEEK 65
                689********************9651444777****************9888776 PP

>> PF10482.4  Tumour-suppressor protein CtIP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   5.1e-06      0.01      57     102 ..      13      59 ..       8      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.1e-06
  PF10482.4  57 kikvledrlraGlcdrctvteelikkkqqelenarlrslk.liselt 102
                ++ +le+ lra      +++ e+++ k++e+ +++lr+lk +i++++
  MMETSP0890-20130614|510_1  13 TVEKLEEELRATHNAVFAMRLEQMQSKRKEFKSSELRKLKkKIAQIM 59 
                6889**********************************972466554 PP

>> PF14075.1  Ubinuclein conserved middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.9   2.2e-05     0.042      57     110 ..      12      65 ..       4      79 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-05
  PF14075.1  57 kvyshLeaflqvsketll.kklkklrlkeekdklkealekLkeavaevMpkqiak 110
                +  + Le+ l+ +++++   +l ++++k+++ k+ + l kLk+++a++Mp + +k
  MMETSP0890-20130614|510_1  12 MTVEKLEEELRATHNAVFaMRLEQMQSKRKEFKS-SELRKLKKKIAQIMPYLEEK 65 
                5567899999999988752688888877766665.679************87655 PP

>> PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.0   4.2e-05     0.081      49      87 ..      36      72 ..       6      75 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
  PF12998.2 49 ngskkltkekeeellkeiqeelkkaqelldeKvqlaeqa 87
                +s    ke + ++l+++++++ +++++l+eK ++a+++
  MMETSP0890-20130614|510_1 36 MQS--KRKEFKSSELRKLKKKIAQIMPYLEEKTAIASEI 72
               222..3445788999*********************987 PP

>> PF05827.7  Vacuolar ATP synthase subunit S1 (ATP6S1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   5.6e-05      0.11     113     165 ..      13      65 ..       4      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.6e-05
  PF05827.7 113 dvetlkehelnaseprvivvrlpelpsas.esrkevLadnDevlgqvlstlpsp 165
                +ve+l+ +el+a+ ++v ++rl++++s++ e  +++L++ ++ + q+++ l+++
  MMETSP0890-20130614|510_1  13 TVEKLE-EELRATHNAVFAMRLEQMQSKRkEFKSSELRKLKKKIAQIMPYLEEK 65 
                455554.67999****************999999**************988865 PP

>> PF00521.15  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   8.1e-05      0.16     361     422 ..      10      69 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.1e-05
  PF00521.15 361 kkkakkeLieelseeqaeyllemrlrrltkeeveklekeieelekeieelektlaklkklik 422
                  + + ++L eel+++  +++  mrl++++++++e   +e+++l+k+i+++   l++ k+ i 
   MMETSP0890-20130614|510_1  10 ASMTVEKLEEELRAT-HNAVFAMRLEQMQSKRKEFKSSELRKLKKKIAQIMPYLEE-KTAIA 69 
                 566788999999999.9********************************9999998.44444 PP

>> PF10303.4  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2   0.00017      0.33       2      59 ..      14      64 ..      13      79 .] 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
  PF10303.4  2 leeispdLepihekLisirrsllslatsakkekskeelaeelkklkeeLkeieskrde 59
               +e+++++L ++h+ ++ +r + ++ +++  k+       +el+klk+++++i    +e
  MMETSP0890-20130614|510_1 14 VEKLEEELRATHNAVFAMRLEQMQSKRKEFKS-------SELRKLKKKIAQIMPYLEE 64
               68999*************97777666555555.......6777777777766555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1818  (0.132972); expected 273.4 (0.02)
Passed bias filter:                      999  (0.073069); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:00.76
# Mc/sec: 249.10
//
Query:       MMETSP0890-20130614|506_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   17.7   0.0      0.018   15.1   0.0    2.1  1  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.025   14.3   0.0    1.5  1  PF13410.1  Glutathione S-transferase, C-terminal domain
      0.038   13.7   0.0       0.07   12.8   0.0    1.5  1  PF11801.3  Tom37 C-terminal domain
      0.085   12.7   0.0       0.16   11.8   0.0    1.5  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.2e-06     0.018       6      68 ..      27      83 ..      24      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.2e-06
               TSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE--.--EEESHHHHHHHHH CS
  PF13417.1  6 fSpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLedd.gevltdSlvIieyLe 68
                S ++ k  l++  +g+p+e   ++         +  p+gk+P+ + + ge++ dS+ Iie L 
  MMETSP0890-20130614|506_1 27 GSSFCTKLELYCLVAGIPFEKPILK-------AGEMGPRGKMPFAIFPsGEIVPDSAKIIEKLQ 83
               6888888888888888888854333.......34589********9777************885 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.3e-06     0.025      21      49 ..     179     216 ..     170     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.3e-06
                ----SS..----........---HHHHHHHHHHHHHHH CS
  PF13410.1  21 hLadgp.fllGd........rpslaDialapflvrlda 49 
                ++ d++ fllG+        +++laDi+l+ +l ++ +
  MMETSP0890-20130614|506_1 179 QIIDDTsFLLGErknlfnteKLTLADIVLYSMLEQFAY 216
                44455557777777777778**************9976 PP

>> PF11801.3  Tom37 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.1e-05      0.07     115     168 .]     179     229 ..     155     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
  PF11801.3 115 ecltlleelldekvefkflfsdskisssdlLllaylylllvekLPdgkirnyLr 168
                +++ + + ll+e+   k lf+++k + +d++l++ l    +++LP++ + +yL+
  MMETSP0890-20130614|506_1 179 QIIDDTSFLLGER---KNLFNTEKLTLADIVLYSMLEQFAYKDLPNNPVGEYLK 229
                3444444455555...*******************************9999997 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.16      47      91 ..     192     241 ..     177     245 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
                 SSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.....HTT-HHHHHHHHHH CS
  PF00043.20  47 kkylvGdkltlADialfpalewlqrldgnfl.....eeefPklkawlkri 91 
                 k  +  +kltlADi+l+  le+++  d+         +   +l+a+++ +
   MMETSP0890-20130614|506_1 192 KNLFNTEKLTLADIVLYSMLEQFAYKDLPNNpvgeyLKTKANLMAFTDAV 241
                 467889***************66655543333344445556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.83
# Mc/sec: 736.23
//
Query:       MMETSP0890-20130614|511_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.98
# Mc/sec: 283.65
//
Query:       MMETSP0890-20130614|516_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1332  (0.0974254); expected 273.4 (0.02)
Passed bias filter:                      688  (0.0503218); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 263.60
//
Query:       MMETSP0890-20130614|512_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.83
# Mc/sec: 2107.64
//
Query:       MMETSP0890-20130614|519_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-12   46.8   0.1    1.7e-07   30.7   0.0    2.2  2  PF00400.27 WD domain, G-beta repeat
     0.0091   14.1   0.0      0.012   13.7   0.0    1.4  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.8e-06     0.026      26      39 .]       1      14 [.       1      14 [. 0.94
   2 !   30.7   0.0   2.5e-11   1.7e-07       2      39 .]      19      56 ..      18      56 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.8e-06
                EEEEETTSEEEEEE CS
  PF00400.27 26 lasgSrDgtirlWd 39
                ++++S+D+t r+W+
   MMETSP0890-20130614|519_1  1 VVTASDDRTARVWN 14
                69***********7 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 2.5e-11
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++ +l+ Ht  V+ +af+pdg+++++++ D + r+++
   MMETSP0890-20130614|519_1 19 SLLFVLEDHTLDVYGCAFAPDGKRIITAGGDEKARVFN 56
                57889*****************************9986 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.7e-06     0.012     234     260 ..       1      27 [.       1      68 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.7e-06
  PF11715.3 234 vftlsrDgkLRvWnletgqclrttdil 260
                v+t s D++ RvWn+e+g++l + ++ 
  MMETSP0890-20130614|519_1   1 VVTASDDRTARVWNVENGSLLFVLEDH 27 
                6799***************95444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 270.56
//
Query:       MMETSP0890-20130614|515_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-15   54.6   0.0    1.2e-14   54.0   0.0    1.3  1  PF02485.16 Core-2/I-Branching enzyme


Domain annotation for each model (and alignments):
>> PF02485.16  Core-2/I-Branching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   8.7e-19   1.2e-14      30     242 ..     110     339 ..      78     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 8.7e-19
  PF02485.16  30 ciyvdskspeefkerleelascffnvrvipksekvtwggpsmveaerrllanllel.dpswkyfvlLSesDiPlktfdeiyrylkslngtnsfvesfedpgekek..krynpkmlpeikkeevllpsalklrkGsqwfvlsRefaeyv...v.........sDnlvykllkeycntcipdEhYfpTllgnkgefe..................nelvnrtlryvdWsrkgchpktyricdlgiedl 242
                 ++y++++ + +    ++e +s+   +++i++   + wg++++++a   l+  +l+  d + +++ l Se+++P+ + d++ + l + +  ns +  f++p + +   k +n+  ++  ++         +  k  qw+ lsR++a  +   +         +D++ ++l + +++t  +dE Yfp ll   ge+e                   ++ +r l+y dW+++g  p+t   +++++e +
   MMETSP0890-20130614|515_1 110 MFYIHAH-KRQ----VAESSSEWVRKHLIKDHFLTPWGSVELCRAASALFVRALKDnDGDLEFAALASETCLPIASPDQVADELFNNDSCNSWIAAFDKPDNGYAvdKQWNA-LSNALPLA-------CT-WKAPQWILLSRDHARLIsmgLpievgsyyhADREKHQLWRLFSKTTAADELYFPSLLAVCGELErepntpnssdphssgvlaPRISRRRLTYCDWTARGRSPATL--HEFTPEII 339
                 5788888.333....44457999999****99999**************9999984255899************************************99996665344444.35555555.......44.589************9965515564666666777777777777*************9999999999999999999999999999999999******999999998..77777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:01.02
# Mc/sec: 1029.02
//
Query:       MMETSP0890-20130614|521_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-14   54.0   0.0    1.2e-14   53.9   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    0.00039   19.9   0.0    0.00051   19.6   0.0    1.2  1  PF13855.1 Leucine rich repeat
     0.0053   16.6   1.4        0.4   10.6   0.1    2.2  2  PF05345.7 Putative Ig domain


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   2.7e-18   1.2e-14       3      50 ..       2      49 .]       1      49 [] 0.52

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 2.7e-18
  PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteig 50
               Ig+yaF+ c++lt+it+p  +t I+++aFs+c+ l++itlp  lt+ig
  MMETSP0890-20130614|521_1  2 IGKYAFRRCTSLTQITLPAGLTMIDDNAFSGCTGLTQITLPAGLTTIG 49
               555555555555555555555555555555555555555555555554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-07   0.00051      16      56 ..       2      41 ..       1      43 [. 0.93

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.1e-07
  PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               i++ aF ++++L+ + L    l+ i+++af+g++ L+++ L
  MMETSP0890-20130614|521_1  2 IGKYAFRRCTSLTQITLP-AGLTMIDDNAFSGCTGLTQITL 41
               78899*************.******************9987 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   8.8e-05       0.4       6      23 ..      12      28 ..       4      35 .. 0.70
   2 !    5.9   0.2    0.0026        12       8      17 ..      37      46 ..      29      46 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.8e-05
  PF05345.7  6 tpgsngLPsGLtLdsstG 23
                 ++ +LP+GLt+   + 
  MMETSP0890-20130614|521_1 12 SLTQITLPAGLTM-IDDN 28
               44789*******9.3333 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0026
  PF05345.7  8 gsngLPsGLt 17
               ++ +LP+GLt
  MMETSP0890-20130614|521_1 37 TQITLPAGLT 46
               6889*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 183.47
//
Query:       MMETSP0890-20130614|522_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 267.02
//
Query:       MMETSP0890-20130614|520_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-14   51.7   0.0      8e-14   51.0   0.0    1.3  1  PF01553.16 Acyltransferase
  ------ inclusion threshold ------
      0.086   12.5   0.1        1.3    8.6   0.0    2.1  2  PF00754.20 F5/8 type C domain


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.2e-17     8e-14      13     131 ..     133     284 ..     115     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 1.2e-17
  PF01553.16  13 kgpaivvaNHqsylDvlllwlllyksnp......envviiakkellsi..pllgflmrnlgcifidRksnkraagslenisellregklviiFPEGtrsrs......................gel..lpfkkGlvrlaakl...gvpivPiai 131
                 + ++++++NH+s lD+++l ++l   ++      + ++ +  +e+++    l++ ++ ++++ +i+R + + ++ +l+ ++++l +gk+v+iFPEG   +                               k+G ++l+a++   +++++P+++
   MMETSP0890-20130614|520_1 133 SIGLLTISNHTSVLDDPFLLAALTPLQQilvnpqKSRWAACSQEVCFSrgALISAFFGAGNTLPIKR-GGGLDQPALKALAQKLAQGKWVHIFPEGHVFQGteigsgrgshgennpnirsessK-AtiGALKWGTAKLIAHApqqKLIVIPMIH 284
                 56899**************999987773456678999999999*999877899**************.88899***********************8888888888999999999999999852.346***********************976 PP

>> PF00754.20  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.035   2.4e+02      47     112 ..      19      92 ..      16     103 .. 0.67
   2 ?    8.6   0.0    0.0002       1.3      35     114 ..     305     384 ..     294     394 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.035
                 EEEEEEEEEEE-BSTST......SEEEEEEEEEESSSSSEEEEEEC.BEB-SSSSSSEEE.EEEEEEEEEEEEE CS
  PF00754.20  47 ekkitgvvtqgrqdggn......gyvksykiqysddgenWtevkde.fegntdnstpvkn.tfdppikaryvri 112
                 + ++ g+ t+ ++  ++      ++++ + i ++ ++ +W  + ++   +n+ +++ v++    + +++  vri
   MMETSP0890-20130614|520_1  19 VVTVAGIGTYLERPIADiedgiwYNARGQIIKVTAQEDDWRIIDEHtRWENWLRDQKVVStWGLQMMQGIIVRI 92 
                 66777777777755555566777999999*************99999555555555555423344455555554 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0002
                 SSTEEEEEEEEEEEEEEEEEEEE-BSTSTSEEEEEEEEEESSSSSEEEEEEC...BEB-SSSSSSEEEEEEEEEEEEEEEEEE CS
  PF00754.20  35 dapqwlqvdLgkekkitgvvtqgrqdggngyvksykiqysddgenWtevkde...fegntdnstpvkntfdppikaryvrivp 114
                  ++q++++  g++ +++ +++q++++ ++    +y+ +y+ ++++ +    e    ++ ++++++ + + +  i+a  v +++
   MMETSP0890-20130614|520_1 305 RSNQHVTLTIGQPLEFDDLILQHERQFNT-SLLQYSSSYKKEDHQQQNQ--EdtlLPDSSESDKILYALISRRIEAALVALHA 384
                 45799*********************998.7777777777666422222..24577788888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.75
# Mc/sec: 1268.47
//
Query:       MMETSP0890-20130614|517_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.058   13.6   4.8      0.072   13.3   3.3    1.2  1  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.3   5.3e-06     0.072      11      72 ..      60     116 ..      52     118 .] 0.63

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.3e-06
  PF00428.14  11 lkaagveveaerlkllvkalegkdikeliangsaklaaaaaaaaaaaaaaaaaaaaeeekke 72 
                 l+ a  ++ea++ k +++ ++g +++++i++ +++    a+a  aa  +a++ a++e++++e
   MMETSP0890-20130614|517_1  60 LETALGQLEAYKTK-FASYVKGDNVDSIISKLKTA----APADPAAIRQAEKVAEQEAAAAE 116
                 56666666777665.789************99855....33444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 387.36
//
Query:       MMETSP0890-20130614|524_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   25.0   0.5    2.1e-05   24.4   0.1    1.5  2  PF01145.20 SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.5e-09   2.1e-05     132     179 .]       1      47 [.       1      47 [. 0.95
   2 ?   -2.7   0.0       0.3   4.1e+03     162     172 ..      53      71 ..      48      89 .. 0.52

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.5e-09
  PF01145.20 132 lqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeaea 179
                 ++ yg  +v++ +td++p+++vkq++++ +a+++ + e ++++aeae+
   MMETSP0890-20130614|524_1   1 MSSYGYHIVRALVTDINPDARVKQSMNEINASRRLR-ESAKEKAEAEK 47 
                 5789********************************.********996 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.3
  PF01145.20 162 aaeaeaa........eaei 172
                 aaea+a+        +a++
   MMETSP0890-20130614|524_1  53 AAEADAEskylsgvgVARQ 71 
                 4444443334444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 466.66
//
Query:       MMETSP0890-20130614|530_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-14   51.8   1.4    8.5e-10   38.0   0.3    2.1  2  PF13374.1  Tetratricopeptide repeat
    2.9e-13   49.4   0.1    3.1e-13   49.3   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    7.7e-08   31.5   0.7    1.4e-07   30.7   0.5    1.4  1  PF00515.23 Tetratricopeptide repeat
    5.7e-07   28.8   0.6    7.8e-07   28.4   0.4    1.3  1  PF07719.12 Tetratricopeptide repeat
    7.3e-06   25.2   0.2    1.4e-05   24.4   0.1    1.5  2  PF13176.1  Tetratricopeptide repeat
    9.7e-06   25.0   0.3    1.1e-05   24.8   0.2    1.3  1  PF13414.1  TPR repeat
    0.00019   21.2   0.9     0.0016   18.3   0.2    2.1  2  PF13431.1  Tetratricopeptide repeat
     0.0003   20.2   0.2    0.00044   19.7   0.2    1.2  1  PF13181.1  Tetratricopeptide repeat
     0.0011   19.4   0.1     0.0012   19.3   0.1    1.2  1  PF13432.1  Tetratricopeptide repeat
     0.0054   16.3   0.0     0.0078   15.8   0.0    1.3  1  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.025   14.6   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.023   15.1   0.2      0.046   14.2   0.1    1.5  2  PF13428.1  Tetratricopeptide repeat
      0.042   14.2   0.1      0.067   13.5   0.1    1.3  1  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.1e-05     0.053      28      41 ..       2      15 ..       1      16 [. 0.94
   2 !   38.0   0.3   8.1e-13   8.5e-10       1      37 [.      17      53 ..      17      54 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.1e-05
  PF13374.1 28 alairrrllGddHP 41
               al ir++ lG++HP
  MMETSP0890-20130614|530_1  2 ALKIREEMLGPNHP 15
               899**********9 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 8.1e-13
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllG 37
               +a+ lnnLAl+l+++g+y+eA +l+e+al i  + lG
  MMETSP0890-20130614|530_1 17 VATNLNNLALLLQNQGKYNEAKPLYERALKIGDEALG 53
               7999*************************99666655 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1     3e-16   3.1e-13      31      75 ..       2      47 ..       1      50 [. 0.94

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 3e-16
  PF13424.1 31 alel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               al++  + lg++hp +a+ lnnla l++ +g+y eA++++e+Al+i
  MMETSP0890-20130614|530_1  2 ALKIrEEMLGPNHPAVATNLNNLALLLQNQGKYNEAKPLYERALKI 47
               99**77788***********************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.5   1.3e-10   1.4e-07       4      30 ..      21      47 ..      18      48 .. 0.96

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.3e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+nl+++++++gky+eA   ye+AL++
   MMETSP0890-20130614|530_1 21 LNNLALLLQNQGKYNEAKPLYERALKI 47
                79***********************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.4   7.5e-10   7.8e-07       3      30 ..      20      47 ..      18      51 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7.5e-10
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                 l+nl+l++ ++g+y+eA+ ++e+Al++
   MMETSP0890-20130614|530_1 20 NLNNLALLLQNQGKYNEAKPLYERALKI 47
                589***********************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.2   5.5e+03      18      26 ..       2      10 ..       2      12 .. 0.66
   2 !   24.4   0.1   1.3e-08   1.4e-05       2      31 ..      21      50 ..      20      54 .] 0.89

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 5.2
  PF13176.1 18 AielyeraL 26
               A+++ e++L
  MMETSP0890-20130614|530_1  2 ALKIREEML 10
               667777765 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1.3e-08
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkd 31
               l+nLa l +++g+y +A  lyeraL++ ++
  MMETSP0890-20130614|530_1 21 LNNLALLLQNQGKYNEAKPLYERALKIGDE 50
               89*********************9877655 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.1e-08   1.1e-05      38      67 ..      16      47 ..       1      51 [. 0.59

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.1e-08
  PF13414.1 38 e...lyynlAlaylklgkdyeeAledyekAlel 67
                    ++nlAl+++++g +y eA   ye+Al++
  MMETSP0890-20130614|530_1 16 AvatNLNNLALLLQNQG-KYNEAKPLYERALKI 47
               44445566666666666.466666666666654 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   1.6e-06    0.0016      13      33 ..      18      38 ..      10      39 .. 0.84
   2 ?    1.5   0.0      0.38     4e+02       1       8 [.      40      47 ..      40      49 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.6e-06
  PF13431.1 13 adaynnLAelllnnGdleeAe 33
               a ++nnLA+ll+n+G++ eA+
  MMETSP0890-20130614|530_1 18 ATNLNNLALLLQNQGKYNEAK 38
               8899***************96 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.38
  PF13431.1  1 lyekalel 8 
               lye+al++
  MMETSP0890-20130614|530_1 40 LYERALKI 47
               7****986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   4.2e-07   0.00044       4      30 ..      21      47 ..      16      49 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.2e-07
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl++++ + G+y +Ak  +e+al++
  MMETSP0890-20130614|530_1 21 LNNLALLLQNQGKYNEAKPLYERALKI 47
               89***********************98 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.2e-06    0.0012       2      26 ..      23      47 ..       7      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.2e-06
  PF13432.1  2 alArallraGdydeAlaaleaalal 26
                lA++l ++G+y eA +++e+al+ 
  MMETSP0890-20130614|530_1 23 NLALLLQNQGKYNEAKPLYERALKI 47
               5899999999999999999999985 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.4e-06    0.0078       7      32 ..      24      47 ..      21      50 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.4e-06
               HHHHHHHTT-HHHHHHH..HHHHHHH CS
  PF07720.7  7 lAaefynkkkyqeArelfsYallail 32
               lA  ++n++ky+eA  l  Y+ + ++
  MMETSP0890-20130614|530_1 24 LALLLQNQGKYNEAKPL--YERALKI 47
               899***********999..7777666 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.4e-05     0.025      24      53 ..      17      47 ..       1      53 [. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.4e-05
               HHHCHHHHHHHHHH---HHHHHHHHHC.TSH CS
  PF12895.2 24 edaylyalAlclylngeykrAyellrk.lel 53
                +++l +lAl l+++g+y++A  l+++ l++
  MMETSP0890-20130614|530_1 17 VATNLNNLALLLQNQGKYNEAKPLYERaLKI 47
               55677789*************9999776554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.9     3e+03      30      41 ..      10      21 ..       2      23 .. 0.72
   2 ?   14.2   0.1   4.4e-05     0.046       5      31 ..      22      48 ..      16      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.9
  PF13428.1 30 laPddaealllL 41
               l+P+++++ ++L
  MMETSP0890-20130614|530_1 10 LGPNHPAVATNL 21
               578888887665 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 4.4e-05
  PF13428.1  5 lalarallalGdpdeAiallrralala 31
                 la +l ++G + eA  l++ral+ +
  MMETSP0890-20130614|530_1 22 NNLALLLQNQGKYNEAKPLYERALKIG 48
               5799********************975 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.3e-05     0.067       5      28 ..      23      46 ..      23      47 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.3e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +lal+++++g++ eA+ ++er +k
  MMETSP0890-20130614|530_1 23 NLALLLQNQGKYNEAKPLYERALK 46
               69*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.18u 0.52s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 187.54
//
Query:       MMETSP0890-20130614|529_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.48s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 509.23
//
Query:       MMETSP0890-20130614|536_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-21   73.9   1.8    1.5e-09   37.2   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.9e-19   69.2   0.0    2.1e-19   69.1   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    2.6e-11   42.5   1.6    1.1e-05   24.7   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.2e-10   40.2   0.1    1.4e-05   24.3   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    2.6e-10   39.2   1.2    6.7e-05   22.3   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
      1e-09   37.7   0.1    1.8e-09   37.0   0.1    1.4  1  PF13414.1  TPR repeat
    6.7e-07   28.5   0.4     0.0092   15.5   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
      1e-06   29.0   0.2    1.6e-06   28.4   0.2    1.3  1  PF13432.1  Tetratricopeptide repeat
    5.2e-06   26.5   0.1      0.048   14.2   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00027   20.8   1.6     0.0011   18.8   0.3    2.5  2  PF13431.1  Tetratricopeptide repeat
     0.0016   18.3   0.1     0.0039   17.1   0.1    1.6  1  PF12688.2  Tetratrico peptide repeat
     0.0026   17.4   0.2       0.28   10.9   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
     0.0037   17.5   0.2          1    9.8   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
     0.0045   16.9   0.0      0.006   16.5   0.0    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.018   15.2   0.0       0.33   11.3   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
      0.098   12.3   0.4        4.2    7.1   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   2.6e-12   2.3e-09      16      42 .]       2      28 ..       1      28 [. 0.97
   2 !   37.2   0.1   1.8e-12   1.5e-09       1      28 [.      29      56 .]      29      56 .] 0.97

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 2.6e-12
  PF13374.1 16 gryeeAlaleeealairrrllGddHPd 42
               g+y+eA +l+e+al+i ++++G++HP+
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEIVEKVHGPNHPE 28
               99************************6 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 1.8e-12
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
               +a++lnnLA +lr++g+y+eA +l+e+a
  MMETSP0890-20130614|536_1 29 VATTLNNLAGLLRNQGKYDEAKPLYERA 56
               89************************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   2.4e-22   2.1e-19      19      72 ..       2      56 .]       1      56 [] 0.98

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 2.4e-22
  PF13424.1 19 gdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
               g+ydeA  lye+ale+  +++g++hp++a++lnnla l++ +g+ydeA++++e+A
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEIvEKVHGPNHPEVATTLNNLAGLLRNQGKYDEAKPLYERA 56
               89***************************************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.2e-06    0.0018      15      30 ..       2      17 ..       1      20 [. 0.94
   2 !   24.7   0.1   1.3e-08   1.1e-05       1      27 [.      30      56 .]      30      56 .] 0.95

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.2e-06
                T-HHHHHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekALel 30
                gkydeA   ye+ALe+
   MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEI 17
                9**************8 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1.3e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekA 27
                a +l+nl+ +++++gkydeA   ye+A
   MMETSP0890-20130614|536_1 30 ATTLNNLAGLLRNQGKYDEAKPLYERA 56
                5689**********************9 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.4e-05      0.02      13      31 ..       2      20 ..       1      28 [. 0.83
   2 !   24.3   0.0   1.7e-08   1.4e-05       1      24 [.      32      55 ..      32      56 .] 0.96

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-05
  PF13176.1 13 gdyekAielyeraLaltkd 31
               g+y++A  lyeraL++ + 
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEIVEK 20
               9***********9988765 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1.7e-08
  PF13176.1  1 allnLarlysrlgdyekAielyer 24
               +l+nLa l +++g+y++A  lyer
  MMETSP0890-20130614|536_1 32 TLNNLAGLLRNQGKYDEAKPLYER 55
               79*********************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.6e-06    0.0056      15      30 ..       2      17 ..       1      20 [. 0.91
   2 !   22.3   0.1   7.9e-08   6.7e-05       2      27 ..      31      56 .]      30      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.6e-06
                T-HHHHHHHHHHHHHH CS
  PF07719.12 15 gdyeeAleafekAlel 30
                g+y+eA+ ++e+Ale+
   MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEI 17
                9*************98 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 7.9e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekA 27
                  l+nl+ +++++g+y+eA+ ++e+A
   MMETSP0890-20130614|536_1 31 TTLNNLAGLLRNQGKYDEAKPLYERA 56
                679**********************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1     2e-12   1.8e-09      17      64 ..       2      56 .]       1      56 [] 0.89

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 2e-12
  PF13414.1 17 gdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekA 64
               g+ydeA  +ye+Ale+      pn++e    ++nlA +++++g +y+eA   ye+A
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEIVekvhgPNHPEvatTLNNLAGLLRNQG-KYDEAKPLYERA 56
               9***************55566688888888*************.6******99998 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00019      0.16      15      30 ..       2      17 ..       1      19 [. 0.95
   2 !   15.5   0.0   1.1e-05    0.0092       3      27 ..      32      56 .]      30      56 .] 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
               T-HHHHHHHHH---HH CS
  PF13181.1 15 GdydkAkeylekalel 30
               G+yd+Ak  +e+ale+
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEI 17
               99************97 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.1e-05
               -TTT---HHHHTT-HHHHHHHHH-- CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeyleka 27
               +++nl+ ++r+ G+yd+Ak  +e+a
  MMETSP0890-20130614|536_1 32 TLNNLAGLLRNQGKYDEAKPLYERA 56
               789*******************987 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.2   1.9e-09   1.6e-06      11      57 ..       2      56 .]       1      56 [] 0.97

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.9e-09
  PF13432.1 11 GdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57
               G+ydeA +++e+al+          Pe a  l +la +l  +g++deA  l+++a
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEIVekvhgpnhPEVATTLNNLAGLLRNQGKYDEAKPLYERA 56
               9************************************************999986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00037      0.31      15      39 ..       2      31 ..       1      34 [. 0.86
   2 !   14.2   0.1   5.6e-05     0.048       3      27 ..      32      56 .]      30      56 .] 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00037
  PF13428.1 15 GdpdeAiallrrala.....laPddaeall 39
               G +deA  l++ral+     ++P+++e+ +
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEivekvHGPNHPEVAT 31
               89************9888888999999876 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.6e-05
  PF13428.1  3 allalarallalGdpdeAiallrra 27
               +l  la +l+++G +deA  l++ra
  MMETSP0890-20130614|536_1 32 TLNNLAGLLRNQGKYDEAKPLYERA 56
               56789******************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.5   3.8e+03      27      33 ..       2       8 ..       1       8 [. 0.83
   2 !   18.8   0.3   1.3e-06    0.0011       1      33 [.      10      50 ..      10      51 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.5
  PF13431.1 27 GdleeAe 33
               G+++eA+
  MMETSP0890-20130614|536_1  2 GKYDEAK 8 
               8999996 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.3e-06
  PF13431.1  1 lyekalel.....dPnn...adaynnLAelllnnGdleeAe 33
               lye+ale+      Pn+   a  +nnLA ll n+G+++eA+
  MMETSP0890-20130614|536_1 10 LYERALEIvekvhGPNHpevATTLNNLAGLLRNQGKYDEAK 50
               6888888876554255555599999**************97 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   4.5e-06    0.0039      15      63 ..       2      55 ..       1      56 [] 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.5e-06
  PF12688.2 15 GeeakAvplYrrAla.....aGLagarrrratiqlaSsLRnlGrveeslallea 63
               G+ ++A plY+rAl+     +G +  +   +   la  LRn G+ +e+  l e+
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEivekvHGPNHPEVATTLNNLAGLLRNQGKYDEAKPLYER 55
               899***********855333455555566666789*************998875 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00033      0.28      19      38 ..       2      21 ..       1      38 [. 0.87
   2 ?    5.3   0.0     0.019        16      17      31 ..      42      56 .]      39      56 .] 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00033
                T-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 19 gkyeeAlelYkeAlelLlqa 38
                gky+eA  lY+ Ale+ +++
   MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALEIVEKV 21
                9**************98775 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.019
                HTT-HHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeA 31
                ++gky+eA  lY+ A
   MMETSP0890-20130614|536_1 42 NQGKYDEAKPLYERA 56
                68**********987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.019        17      14      28 ..       2      16 ..       1      17 [. 0.89
   2 !    9.8   0.0    0.0012         1       6      25 ..      36      55 ..      35      56 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.019
               HHHHHHHHHHHHHHH CS
  PF13174.1 14 gdtdeAlealerlik 28
               g++deA+ ++er ++
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYERALE 16
               69**********986 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0012
               HHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealer 25
               la +++++g++deA+ ++er
  MMETSP0890-20130614|536_1 36 LAGLLRNQGKYDEAKPLYER 55
               666788899*********98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     7e-06     0.006       4      48 ..       3      53 ..       1      56 [] 0.70

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7e-06
               -HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHH CS
  PF12895.2  4 nyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyell 48
                y++A  l+e++l+   k      p  ++ l +lA  l ++g+y++A  l+
  MMETSP0890-20130614|536_1  3 KYDEAKPLYERALEIVEKvhgpnHPeVATTLNNLAGLLRNQGKYDEAKPLY 53
               5777777777777777777765323344455559************97776 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.46   3.9e+02      15      26 .]       2      13 ..       1      13 [. 0.88
   2 ?   11.3   0.0   0.00039      0.33       3      26 .]      32      55 ..      30      55 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.46
               ------HHHHHT CS
  PF07721.9 15 GdldeAraller 26
               G +deA  l er
  MMETSP0890-20130614|536_1  2 GKYDEAKPLYER 13
               889***999987 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00039
               HH---HHHHHH-------HHHHHT CS
  PF07721.9  3 allaLArallalGdldeAraller 26
               +l +LA +l  +G +deA  l er
  MMETSP0890-20130614|536_1 32 TLNNLAGLLRNQGKYDEAKPLYER 55
               5679**************999987 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.054        46      15      27 ..       2      12 ..       1      20 [. 0.81
   2 ?    7.1   0.0    0.0049       4.2      13      26 ..      42      53 ..      36      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.054
               T-HHHHHHH..HH CS
  PF07720.7 15 kkyqeArelfsYa 27
               +ky+eA  l  Y+
  MMETSP0890-20130614|536_1  2 GKYDEAKPL--YE 12
               9*****888..65 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0049
               HTT-HHHHHHH..H CS
  PF07720.7 13 nkkkyqeArelfsY 26
               n++ky+eA  l  Y
  MMETSP0890-20130614|536_1 42 NQGKYDEAKPL--Y 53
               8*******777..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP0890-20130614|537_1  [L=842]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1426  (0.104301); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.46u 0.44s 00:00:01.90 Elapsed: 00:00:01.12
# Mc/sec: 1801.55
//
Query:       MMETSP0890-20130614|534_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-06   25.4   1.2      0.034   13.6   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)
    0.00032   20.2   0.0       0.45   10.1   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
      0.027   14.2   0.0        6.2    6.6   0.0    2.1  2  PF04915.7  DltD N-terminal region


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   4.9e-05      0.23      26      36 ..       6      16 ..       4      16 .. 0.89
   2 !   13.6   0.1   7.5e-06     0.034      17      36 ..      30      53 .]      27      53 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.9e-05
  PF07671.6 26 erFNpQsIANt 36
                 FNpQ+ ANt
  MMETSP0890-20130614|534_1  6 DGFNPQNLANT 16
               67********9 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.5e-06
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+         FNpQ+ ANt
  MMETSP0890-20130614|534_1 30 LFNAIAdaalTKLDGFNPQNLANT 53
               88999988888999*********9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00023       1.1      31      50 ..       3      22 ..       1      26 [. 0.85
   2 !   10.1   0.0   9.9e-05      0.45      18      43 ..      27      52 ..      23      53 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00023
  PF06743.10 31 reLdsispelllnlvwSlcl 50
                ++ d+++p++l n+ w+++ 
   MMETSP0890-20130614|534_1  3 TKVDGFNPQNLANTAWAFAT 22
                4559**************96 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 9.9e-05
  PF06743.10 18 aeeffeklasalereLdsispellln 43
                a ++f+++a a  ++Ld+++p++l n
   MMETSP0890-20130614|534_1 27 APALFNAIADAALTKLDGFNPQNLAN 52
                6789******************9976 PP

>> PF04915.7  DltD N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0014       6.2      39      53 ..       2      16 ..       1      21 [. 0.89
   2 ?    6.0   0.0    0.0022       9.9      39      52 ..      39      52 ..      37      53 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0014
  PF04915.7 39 lsrfDafhPsvlaek 53
               l ++D f+P +la+ 
  MMETSP0890-20130614|534_1  2 LTKVDGFNPQNLANT 16
               789*********985 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0022
  PF04915.7 39 lsrfDafhPsvlae 52
               l ++D f+P +la+
  MMETSP0890-20130614|534_1 39 LTKLDGFNPQNLAN 52
               789*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 218.98
//
Query:       MMETSP0890-20130614|540_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.6   0.1     0.0036   16.8   0.0    1.5  2  PF07671.6  Protein of unknown function (DUF1601)
  ------ inclusion threshold ------
      0.075   12.6   0.0       0.08   12.5   0.0    1.1  1  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.2e-07    0.0036      17      36 ..       9      32 ..       6      33 .. 0.91
   2 ?   -2.6   0.0      0.59     4e+03      17      22 ..      46      51 ..      44      51 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.2e-07
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+      +  FNpQ+ ANt
  MMETSP0890-20130614|540_1  9 LFNAIAveavTKVDGFNPQGLANT 32
               899999999999***********9 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.59
  PF07671.6 17 LlaAIr 22
               L++AI+
  MMETSP0890-20130614|540_1 46 LFDAIA 51
               899995 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05      0.08      18      50 ..       6      38 ..       3      49 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a +  ++ d+++p+ l n+ w+++ 
   MMETSP0890-20130614|540_1  6 APALFNAIAVEAVTKVDGFNPQGLANTIWAFAT 38
                5689999999999999***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 211.20
//
Query:       MMETSP0890-20130614|541_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-30  102.8   1.1    3.4e-10   39.2   0.0    3.0  3  PF00400.27 WD domain, G-beta repeat
    3.4e-05   22.1   3.0      0.013   13.5   0.0    2.5  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.7e-09   1.2e-05      17      39 .]       2      25 ..       1      25 [. 0.96
   2 !   39.2   0.0     5e-14   3.4e-10       5      39 .]      32      66 ..      29      66 .. 0.95
   3 !   36.6   0.0   3.4e-13   2.3e-09       1      38 [.      70     108 ..      70     109 .] 0.96

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.7e-09
                EEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27 17 vafspd.gpllasgSrDgtirlWd 39
                va+sp+  + lasg +D+++r+W+
   MMETSP0890-20130614|541_1  2 VAWSPSnETQLASGADDNKVRIWN 25
                8**********************7 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 5e-14
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH++ V+++a+s +g  l+s+S D+t+rlWd
   MMETSP0890-20130614|541_1 32 RELVGHEGDVNSIAYSLNGMTLVSASGDHTCRLWD 66
                6899******************************9 PP

  == domain 3    score: 36.6 bits;  conditional E-value: 3.4e-13
                 TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27   1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                 g++++++rg t+ V+ v+fsp+ g+++as ++D+tir+W
   MMETSP0890-20130614|541_1  70 GTQLRVFRGATAEVYRVDFSPNdGTVFASVGSDNTIRIW 108
                 57899********************************** PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2     4e-05      0.27     240     253 ..      18      31 ..       5      44 .. 0.84
   2 !   13.5   0.0   1.9e-06     0.013     228     260 ..      48      79 ..      33     106 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 4e-05
  PF11715.3 240 DgkLRvWnletgqc 253
                D+k+R+Wn++t+ c
  MMETSP0890-20130614|541_1  18 DNKVRIWNTDTNEC 31 
                9************9 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.9e-06
  PF11715.3 228 vegqtfvftlsrDgkLRvWnletgqclrttdil 260
                ++g t+v + s D++ R+W++++g++lr+   +
  MMETSP0890-20130614|541_1  48 LNGMTLV-SASGDHTCRLWDVTNGTQLRVFRGA 79 
                5777777.99****************9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 395.76
//
Query:       MMETSP0890-20130614|544_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 512.32
//
Query:       MMETSP0890-20130614|547_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-25   87.1   0.2    5.6e-25   86.9   0.2    1.0  1  PF13424.1  Tetratricopeptide repeat
    1.7e-24   84.7   0.4    6.2e-13   48.0   0.0    2.2  2  PF13374.1  Tetratricopeptide repeat
    8.4e-16   56.7   1.9    4.3e-07   29.1   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    6.7e-14   50.3   0.2    4.5e-06   25.9   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    4.7e-13   47.8   1.2    2.3e-05   23.8   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.6e-11   43.5   1.3    2.8e-11   42.7   0.7    1.5  1  PF13414.1  TPR repeat
    2.9e-09   35.9   1.7     0.0013   18.2   0.2    2.1  2  PF13181.1  Tetratricopeptide repeat
    5.5e-09   35.4   2.5    0.00021   21.1   0.2    2.7  2  PF13431.1  Tetratricopeptide repeat
    2.2e-06   28.0   0.2      1e-05   25.9   0.1    1.8  1  PF13432.1  Tetratricopeptide repeat
    6.5e-06   26.2   0.0       0.15   12.6   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    9.2e-05   21.4   0.1      0.017   13.9   0.0    2.0  2  PF04910.9  Transcriptional repressor TCF25
      0.001   19.0   0.1     0.0017   18.3   0.1    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0012   19.0   0.7       0.11   12.9   0.0    2.3  2  PF13174.1  Tetratricopeptide repeat
     0.0066   16.6   0.0        0.1   12.9   0.0    2.3  3  PF07721.9  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.6   0.3        9.3    6.3   0.0    2.9  3  PF01535.15 PPR repeat
      0.011   15.5   1.3       0.72    9.6   0.1    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
       0.03   14.0   0.4        3.3    7.4   0.0    2.0  2  PF11846.3  Domain of unknown function (DUF3366)
      0.035   14.4   0.2       0.62   10.4   0.1    2.0  2  PF14357.1  Domain of unknown function (DUF4404)
      0.057   12.9   0.0       0.44   10.0   0.0    1.9  2  PF00758.13 Erythropoietin/thrombopoietin


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.2   7.8e-28   5.6e-25       1      72 [.       3      75 .]       3      75 .] 0.97

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 7.8e-28
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
               hp++at lnnla +l+ +g+y eA ++ ++al++  + lg++hpd+a++lnnla+l+ ++g+ydeA++++e+A
  MMETSP0890-20130614|547_1  3 HPQIATGLNNLASLLKDQGKYNEAMSYHQRALKIcEEMLGPNHPDVATTLNNLATLLKKQGNYDEAKPLYERA 75
               89********************************77778********************************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   8.6e-16   6.2e-13       2      42 .]       7      47 ..       6      47 .. 0.96
   2 !   35.1   0.1   9.7e-12     7e-09       1      28 [.      48      75 .]      48      75 .] 0.97

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 8.6e-16
  PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               a+ lnnLA +l ++g+y+eA  ++++al i+++ lG++HPd
  MMETSP0890-20130614|547_1  7 ATGLNNLASLLKDQGKYNEAMSYHQRALKICEEMLGPNHPD 47
               6779************************************8 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 9.7e-12
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
               +a++lnnLA +l ++g+y+eA +l+e+a
  MMETSP0890-20130614|547_1 48 VATTLNNLATLLKKQGNYDEAKPLYERA 75
               79************************97 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.2     6e-10   4.3e-07       2      32 ..       8      38 ..       7      40 .. 0.92
   2 !   27.6   0.1   1.8e-09   1.3e-06       1      27 [.      49      75 .]      49      75 .] 0.95

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 6e-10
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                  l+nl+ ++  +gky+eA  y ++AL++ +
   MMETSP0890-20130614|547_1  8 TGLNNLASLLKDQGKYNEAMSYHQRALKICE 38
                579*************************986 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.8e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekA 27
                a +l+nl+ ++ k+g+ydeA   ye+A
   MMETSP0890-20130614|547_1 49 ATTLNNLATLLKKQGNYDEAKPLYERA 75
                5689**********************9 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.2e-09   4.5e-06       2      34 ..      10      42 ..       9      44 .. 0.91
   2 !   23.0   0.0   5.5e-08   3.9e-05       1      24 [.      51      74 ..      51      75 .] 0.96

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 6.2e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
               l+nLa+l  ++g+y +A ++++raL++ ++ l+
  MMETSP0890-20130614|547_1 10 LNNLASLLKDQGKYNEAMSYHQRALKICEEMLG 42
               89*********************9999887766 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 5.5e-08
  PF13176.1  1 allnLarlysrlgdyekAielyer 24
               +l+nLa l  ++g+y++A  lyer
  MMETSP0890-20130614|547_1 51 TLNNLATLLKKQGNYDEAKPLYER 74
               79*********************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   4.7e-08   3.4e-05       2      32 ..       8      38 ..       7      39 .. 0.93
   2 !   23.8   0.0   3.3e-08   2.3e-05       2      27 ..      50      75 .]      49      75 .] 0.94

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 4.7e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldP 32
                 +l+nl+ ++  +g+y+eA  + ++Al+++ 
   MMETSP0890-20130614|547_1  8 TGLNNLASLLKDQGKYNEAMSYHQRALKICE 38
                689*************************986 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 3.3e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekA 27
                  l+nl+ ++ k+g+y+eA+ ++e+A
   MMETSP0890-20130614|547_1 50 TTLNNLATLLKKQGNYDEAKPLYERA 75
                679**********************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.7   3.9e-14   2.8e-11       5      64 ..       9      75 .]       5      75 .] 0.90

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 3.9e-14
  PF13414.1  5 alkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekA 64
                l++l+  l  +g+y eA  + ++Al+++     pn+++    ++nlA ++ k+g +y+eA   ye+A
  MMETSP0890-20130614|547_1  9 GLNNLASLLKDQGKYNEAMSYHQRALKICeemlgPNHPDvatTLNNLATLLKKQG-NYDEAKPLYERA 75
               5899***********************977777788877777*************.7*****999998 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   1.8e-06    0.0013       3      30 ..       9      36 ..       7      38 .. 0.92
   2 !   17.2   0.0   3.7e-06    0.0027       3      27 ..      51      75 .]      49      75 .] 0.92

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.8e-06
               -TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                ++nl++++++ G+y +A++y ++al++
  MMETSP0890-20130614|547_1  9 GLNNLASLLKDQGKYNEAMSYHQRALKI 36
               589***********************98 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 3.7e-06
               -TTT---HHHHTT-HHHHHHHHH-- CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeyleka 27
               +++nl+ ++++ G+yd+Ak  +e+a
  MMETSP0890-20130614|547_1 51 TLNNLATLLKKQGNYDEAKPLYERA 75
               799******************9987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   5.9e-05     0.043       9      32 ..       3      26 ..       2      28 .. 0.91
   2 !   21.1   0.2     3e-07   0.00021       9      33 ..      45      69 ..      29      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.9e-05
  PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
               +P  a  +nnLA ll+++G++ eA
  MMETSP0890-20130614|547_1  3 HPQIATGLNNLASLLKDQGKYNEA 26
               7888999**************998 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 3e-07
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
               +P+ a  +nnLA+ll+++G+++eA+
  MMETSP0890-20130614|547_1 45 HPDVATTLNNLATLLKKQGNYDEAK 69
               577799999**************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.4e-08     1e-05       3      57 ..      13      75 .]      11      75 .] 0.95

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.4e-08
  PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57
               lA +l ++G+y eA  ++++al+          P+ a  l +la +l ++g++deA  l+++a
  MMETSP0890-20130614|547_1 13 LASLLKDQGKYNEAMSYHQRALKICeemlgpnhPDVATTLNNLATLLKKQGNYDEAKPLYERA 75
               789999*****************99999**99*************************999986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00024      0.17       4      38 ..      10      49 ..       7      52 .. 0.79
   2 !   12.6   0.0   0.00021      0.15       4      27 ..      52      75 .]      48      75 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00024
  PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaeal 38
               l  la +l ++G + eA+ + +ral+     l+P+++++ 
  MMETSP0890-20130614|547_1 10 LNNLASLLKDQGKYNEAMSYHQRALKiceemLGPNHPDVA 49
               5679*********************955555566666665 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00021
  PF13428.1  4 llalarallalGdpdeAiallrra 27
               l  la +l  +G++deA  l++ra
  MMETSP0890-20130614|547_1 52 LNNLATLLKKQGNYDEAKPLYERA 75
               6689******************98 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.4e-05     0.017      36      77 ..       3      44 ..       1      50 [. 0.91
   2 !    6.6   0.0    0.0041       2.9      41      66 ..      50      75 .]      43      75 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.4e-05
  PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhps 77
               +P    +L +l+ +++ qg++++A+ + +raL i+e+++ p+
  MMETSP0890-20130614|547_1  3 HPQIATGLNNLASLLKDQGKYNEAMSYHQRALKICEEMLGPN 44
               7888999******************************99887 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0041
  PF04910.9 41 dtLlqlsevyreqgdfevAndliera 66
                tL +l+ ++++qg++ +A  l era
  MMETSP0890-20130614|547_1 50 TTLNNLATLLKKQGNYDEAKPLYERA 75
               69*********************998 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.4e-06    0.0017      30      83 ..      12      74 ..       2      75 .] 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.4e-06
               HHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHHH CS
  PF12895.2 30 alAlclylngeykrAyellrk......leldssslgcryllA...rcllklgkydeAiavLek 83
               +lA  l  +g+y++A+ + ++      + l +++++ +  l+     l k+g ydeA  ++e+
  MMETSP0890-20130614|547_1 12 NLASLLKDQGKYNEAMSYHQRalkiceEMLGPNHPDVATTLNnlaTLLKKQGNYDEAKPLYER 74
               568888889999888888888888887777888888888664342555577779999888876 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.063        45       6      25 ..      13      32 ..      12      36 .. 0.75
   2 !   12.9   0.0   0.00015      0.11       5      25 ..      54      74 ..      54      75 .] 0.93

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.063
               HHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealer 25
               la +++ +g++ eA+ + +r
  MMETSP0890-20130614|547_1 13 LASLLKDQGKYNEAMSYHQR 32
               77888889999999987555 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00015
               HHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealer 25
               +la +++k+g++deA+ ++er
  MMETSP0890-20130614|547_1 54 NLATLLKKQGNYDEAKPLYER 74
               6999***************98 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.75   5.4e+02       4      20 ..      10      26 ..       7      28 .. 0.81
   2 ?   -1.2   0.0       5.2   3.7e+03       5      14 ..      23      32 ..      20      32 .. 0.78
   3 !   12.9   0.0   0.00014       0.1       3      26 .]      51      74 ..      49      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.75
               H---HHHHHH------- CS
  PF07721.9  4 llaLArallalGdldeA 20
               l +LA +l ++G + eA
  MMETSP0890-20130614|547_1 10 LNNLASLLKDQGKYNEA 26
               5689999999*988776 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 5.2
               ---HHHHHH- CS
  PF07721.9  5 laLArallal 14
               ++ A+ ++++
  MMETSP0890-20130614|547_1 23 YNEAMSYHQR 32
               6889999986 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00014
               HH---HHHHHH-------HHHHHT CS
  PF07721.9  3 allaLArallalGdldeAraller 26
               +l +LA +l  +G++deA  l er
  MMETSP0890-20130614|547_1 51 TLNNLATLLKKQGNYDEAKPLYER 74
               5679**************999987 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.036        26       4      25 ..      11      32 ..      10      35 .. 0.84
   2 ?    2.9   0.1      0.16   1.1e+02      16      27 ..      30      41 ..      27      44 .. 0.85
   3 ?    6.3   0.0     0.013       9.3       2      20 ..      51      69 ..      50      74 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.036
  PF01535.15  4 nslIsgyckaGkleeAlelfke 25
                n l s +   Gk+ eA++++++
   MMETSP0890-20130614|547_1 11 NNLASLLKDQGKYNEAMSYHQR 32
                7788888899*******99875 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.16
  PF01535.15 16 leeAlelfkeMk 27
                ++ Al++ +eM+
   MMETSP0890-20130614|547_1 30 HQRALKICEEML 41
                578********7 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.013
  PF01535.15  2 tynslIsgyckaGkleeAl 20
                t n l   + k G+++eA 
   MMETSP0890-20130614|547_1 51 TLNNLATLLKKQGNYDEAK 69
                78999999*********96 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1     0.001      0.72      18      39 ..      20      41 ..      14      54 .. 0.91
   2 ?    5.6   0.1     0.018        13      17      31 ..      61      75 .]      47      75 .] 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.001
                TT-HHHHHHHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlelLlqal 39
                +gky+eA  + + Al++++++l
   MMETSP0890-20130614|547_1 20 QGKYNEAMSYHQRALKICEEML 41
                79**************998865 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.018
                HTT-HHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeA 31
                ++g+y+eA  lY+ A
   MMETSP0890-20130614|547_1 61 KQGNYDEAKPLYERA 75
                78**********987 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.017        12     147     171 ..      10      34 ..       2      40 .. 0.87
   2 ?    7.4   0.0    0.0046       3.3     144     169 ..      49      74 ..      38      75 .] 0.86

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.017
  PF11846.3 147 irrlalalallGkeeeArdamaeaa 171
                +++la++l  +Gk  eA  ++++a 
  MMETSP0890-20130614|547_1  10 LNNLASLLKDQGKYNEAMSYHQRAL 34 
                689****************999985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0046
  PF11846.3 144 pavirrlalalallGkeeeArdamae 169
                ++++++la++l  +G+ +eA+ + ++
  MMETSP0890-20130614|547_1  49 ATTLNNLATLLKKQGNYDEAKPLYER 74 
                57899***************987776 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.12        90      65      82 ..       2      19 ..       1      21 [. 0.87
   2 ?   10.4   0.1   0.00086      0.62      59      82 ..      38      61 ..      12      63 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.12
  PF14357.1 65 eHPklagtlrnildsLan 82
               +HP++a  l+n++  L+ 
  MMETSP0890-20130614|547_1  2 NHPQIATGLNNLASLLKD 19
               6***********999975 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00086
  PF14357.1 59 verFeaeHPklagtlrnildsLan 82
                e    +HP++a tl+n++  L++
  MMETSP0890-20130614|547_1 38 EEMLGPNHPDVATTLNNLATLLKK 61
               4455679*************9987 PP

>> PF00758.13  Erythropoietin/thrombopoietin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00062      0.44      95     123 ..       5      33 ..       2      42 .. 0.89
   2 ?    1.5   0.0      0.25   1.8e+02      96     116 ..      48      68 ..      37      75 .] 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00062
  PF00758.13  95 kavsgLrsltsLLralgaqkeaisapdaa 123
                 ++  gL  l sLL+ +g  +ea+s ++ a
   MMETSP0890-20130614|547_1   5 QIATGLNNLASLLKDQGKYNEAMSYHQRA 33 
                 7889*********************9876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.25
  PF00758.13  96 avsgLrsltsLLralgaqkea 116
                 +   L  l +LL+ +g   ea
   MMETSP0890-20130614|547_1  48 VATTLNNLATLLKKQGNYDEA 68 
                 677899999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.40u 0.44s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 246.20
//
Query:       MMETSP0890-20130614|538_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.097   12.6   0.0    1.7  1  PF13519.1 von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.1e-06     0.097       4     113 ..      82     219 ..      80     246 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.1e-06
  PF13519.1   4 lvlDvSgSMnaedv...............sptrldaakaalkdlldelpgd.....rvglvafsg..saelvapltsd..raalkaalnsldprlmpgggtnlaaalalalellakad.......grraaivlvtDGedn...s 113
                +++D+S+SM  +d+                 tr+d++k++l   + ++  +     ++ l++     s + ++ l ++   + l  +l+ +       g t+l   l+   + +++         g    +v+ tDGe++   +
  MMETSP0890-20130614|538_1  82 WLIDNSASMTSQDGhrymndsdggghrmdRSTRWDELKDTLHF-VGRMAIKlqawtEFRLINKPPnhSGYIRLGLGENdeVDLLMKFLETIP-----LGHTPLCTCLKNLENDIKRHAeqvkdleGKYICVVISTDGEPTdvaQ 219
                589******9999999999999999998769*********964.444443300012555555444335788888865401344444444444.....56777666666666666544444445435555667778999884432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.62
# Mc/sec: 1202.04
//
Query:       MMETSP0890-20130614|553_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   53.0   0.0    1.2e-09   37.6   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.5e-11   43.9   0.0    1.6e-11   43.8   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    9.9e-05   21.6   0.0    0.00012   21.4   0.0    1.1  1  PF00515.23 Tetratricopeptide repeat
    0.00014   21.2   0.0    0.00019   20.8   0.0    1.2  1  PF13176.1  Tetratricopeptide repeat
     0.0011   18.4   0.0     0.0012   18.3   0.0    1.2  1  PF13414.1  TPR repeat
     0.0015   18.2   0.0     0.0018   17.9   0.0    1.2  1  PF07719.12 Tetratricopeptide repeat
     0.0096   16.4   0.0     0.0097   16.4   0.0    1.1  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.066   13.7   0.1       0.12   12.9   0.0    1.5  2  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.9e-05     0.032      30      42 .]       3      15 ..       2      15 .. 0.94
   2 !   37.6   0.0     7e-13   1.2e-09       1      36 [.      16      51 ..      16      54 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.9e-05
  PF13374.1 30 airrrllGddHPd 42
               +i+++++G++HPd
  MMETSP0890-20130614|553_1  3 EIWEKVHGPNHPD 15
               79**********8 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 7e-13
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrll 36
               +a++lnnLA ++ ++++y eA++l+++al+i  + l
  MMETSP0890-20130614|553_1 16 VATTLNNLAGMFEDQKKYKEARPLLQRALTILVAKL 51
               89****************************976655 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   9.3e-15   1.6e-11      33      75 ..       3      46 ..       1      49 [. 0.92

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 9.3e-15
  PF13424.1 33 el.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               e+  +++g++hpd+a++lnnla  ++ +++y+eA+++l++Al+i
  MMETSP0890-20130614|553_1  3 EIwEKVHGPNHPDVATTLNNLAGMFEDQKKYKEARPLLQRALTI 46
               6867789***********************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     7e-08   0.00012       1      30 [.      17      46 ..      17      47 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a +l+nl+ ++  ++ky+eA    ++AL++
   MMETSP0890-20130614|553_1 17 ATTLNNLAGMFEDQKKYKEARPLLQRALTI 46
                5689************************87 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00019       1      27 [.      19      45 ..      19      52 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.1e-07
  PF13176.1  1 allnLarlysrlgdyekAielyeraLa 27
               +l+nLa +++++ +y++A  l++raL 
  MMETSP0890-20130614|553_1 19 TLNNLAGMFEDQKKYKEARPLLQRALT 45
               79**********************663 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.9e-07    0.0012       2      32 ..      16      46 ..       3      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.9e-07
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAlel 32
               +A +l++l+ ++  +++y+eA  ++++Al +
  MMETSP0890-20130614|553_1 16 VATTLNNLAGMFEDQKKYKEARPLLQRALTI 46
               5778888888888888888888888888865 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0018       2      30 ..      18      46 ..      17      47 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  l+nl+   + +++y+eA+ ++++Al +
   MMETSP0890-20130614|553_1 18 TTLNNLAGMFEDQKKYKEARPLLQRALTI 46
                6799**********************975 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.7e-06    0.0097      27      58 ..      13      44 ..       6      54 .] 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.7e-06
  PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal 58
               +P+ a  l +la ++ ++++++eA+ ll++al
  MMETSP0890-20130614|553_1 13 HPDVATTLNNLAGMFEDQKKYKEARPLLQRAL 44
               489999999****************9999998 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.3   2.2e+03      30      40 ..       9      19 ..       2      24 .. 0.62
   2 ?   12.9   0.0   6.9e-05      0.12       4      29 ..      20      45 ..      16      52 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 1.3
  PF13428.1 30 laPddaealll 40
               ++P+++++ + 
  MMETSP0890-20130614|553_1  9 HGPNHPDVATT 19
               56666666544 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 6.9e-05
  PF13428.1  4 llalarallalGdpdeAiallrrala 29
               l  la  ++++  ++eA+ ll+ral 
  MMETSP0890-20130614|553_1 20 LNNLAGMFEDQKKYKEARPLLQRALT 45
               668999******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 219.33
//
Query:       MMETSP0890-20130614|548_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-64  214.2   0.0    1.7e-35  121.4   0.0    2.0  2  PF13306.1 Leucine rich repeats (6 copies)
      3e-23   81.2   0.0    3.2e-07   29.9   0.0    4.1  4  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
       0.11   12.2   6.1        2.2    7.9   0.1    2.9  3  PF07213.6 DAP10 membrane protein
       0.77    8.1   3.9        1.5    7.1   0.4    2.3  3  PF09818.4 Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   1.5e-31   5.1e-28       7     100 ..       1      94 [.       1      94 [. 0.98
   2 !  121.4   0.0   4.9e-39   1.7e-35      11     126 ..      28     144 ..      28     146 .. 0.99

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 1.5e-31
  PF13306.1   7 aFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaF 100
                aFy+c++lt +t+p  +t+Ig +aF++c+sl+++tlp  lt ig   F +c+sl+++t+p  lt+ig+++F +c+sl+++++p  lttig+ aF
  MMETSP0890-20130614|548_1   1 AFYGCSSLTYLTLPVGLTTIGIEAFYGCTSLTELTLPVGLTRIGGGTFHGCTSLNQLTLPAGLTTIGNRTFFGCTSLSQLTLPVGLTTIGDGAF 94 
                7*******************************************************************************************99 PP

  == domain 2    score: 121.4 bits;  conditional E-value: 4.9e-39
  PF13306.1  11 cknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitipssvteigsnaFsncs 126
                c++lt++t+p  +t+Ig  +F++c+sl+++tlp  lt+ig++ F +c+sl+++t+p  lt+ig+ aF++c+sl ++++p  lt+i  +aF++c sl+++t+p+s+t+i+s+aF +c 
  MMETSP0890-20130614|548_1  28 CTSLTELTLPVGLTRIGGGTFHGCTSLNQLTLPAGLTTIGNRTFFGCTSLSQLTLPVGLTTIGDGAFEGCTSLIHLTLPAGLTEIAYNAFEGCtSLTHLTMPDSITRIRSDAFDGCP 144
                88*******************************************************************************************9**********************6 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.2e-07   0.00074      20      56 ..       1      36 [.       1      37 [. 0.97
   2 !   23.8   0.0   7.4e-09   2.5e-05      13      56 ..      40      82 ..      39      85 .. 0.97
   3 !   29.9   0.0   9.3e-11   3.2e-07      13      56 ..      86     128 ..      84     131 .. 0.96
   4 !   18.8   0.0   2.7e-07   0.00091      13      50 ..     109     145 ..     108     145 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.2e-07
  PF13855.1 20 aFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               aF g+s+L++L L    l++i  eaf g++sL+eL L
  MMETSP0890-20130614|548_1  1 AFYGCSSLTYLTLP-VGLTTIGIEAFYGCTSLTELTL 36
               69************.********************98 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 7.4e-09
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l++i+ g+F+g+++L  L L    l++i  ++f g++sL++L L
  MMETSP0890-20130614|548_1 40 LTRIGGGTFHGCTSLNQLTLP-AGLTTIGNRTFFGCTSLSQLTL 82
               899******************.********************98 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 9.3e-11
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                l++i+dgaF+g+++L +L L    l++i  +af+g++sL++L +
  MMETSP0890-20130614|548_1  86 LTTIGDGAFEGCTSLIHLTLP-AGLTEIAYNAFEGCTSLTHLTM 128
                89*******************.********************87 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 2.7e-07
  PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50 
                l++i+ +aF+g+++L++L    +++++i ++af+g+p+
  MMETSP0890-20130614|548_1 109 LTEIAYNAFEGCTSLTHLTMP-DSITRIRSDAFDGCPN 145
                899999***************.**************96 PP

>> PF07213.6  DAP10 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.12   4.2e+02       9      32 ..       9      32 ..       3      41 .. 0.67
   2 ?    6.4   0.4    0.0019       6.5      11      40 ..      34      64 ..      26      70 .. 0.86
   3 ?    7.9   0.1   0.00064       2.2      10      40 ..      79     110 ..      71     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.12
  PF07213.6  9 fllllpvaaaqtteGscsGcGpls 32
                 l lpv  + +   +  Gc +l+
  MMETSP0890-20130614|548_1  9 TYLTLPVGLTTIGIEAFYGCTSLT 32
               456788888887777888888774 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0019
  PF07213.6 11 lllpvaaaqtteGscsGcGpls.lpllaGlv 40
               l lpv  +++  G+  Gc +l  l l aGl 
  MMETSP0890-20130614|548_1 34 LTLPVGLTRIGGGTFHGCTSLNqLTLPAGLT 64
               789*****************96488889986 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00064
  PF07213.6  10 llllpvaaaqtteGscsGcGpl.slpllaGlv 40 
                 l lpv  + + +G+  Gc +l  l l aGl 
  MMETSP0890-20130614|548_1  79 QLTLPVGLTTIGDGAFEGCTSLiHLTLPAGLT 110
                5789****************984688889985 PP

>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4   0.00045       1.5     237     260 ..      31      54 ..      12      63 .. 0.86
   2 ?    1.7   0.1      0.02        69     238     262 ..      78     102 ..      73     110 .. 0.89
   3 ?   -2.2   0.0      0.31   1.1e+03     240     260 ..     103     123 ..     100     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00045
  PF09818.4 237 vsGlgipkGitlIvGggyhGKsTL 260
                ++ l +p G+t I Gg +hG + L
  MMETSP0890-20130614|548_1  31 LTELTLPVGLTRIGGGTFHGCTSL 54 
                67789***************9887 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.02
  PF09818.4 238 sGlgipkGitlIvGggyhGKsTLLe 262
                s l +p G+t+I  g+++G + L++
  MMETSP0890-20130614|548_1  78 SQLTLPVGLTTIGDGAFEGCTSLIH 102
                66899***************99985 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.31
  PF09818.4 240 lgipkGitlIvGggyhGKsTL 260
                l +p G+t I+  +++G + L
  MMETSP0890-20130614|548_1 103 LTLPAGLTEIAYNAFEGCTSL 123
                67999******9999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                      106  (0.00775307); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 629.04
//
Query:       MMETSP0890-20130614|551_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 314.01
//
Query:       MMETSP0890-20130614|556_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-21   74.2   5.4    2.2e-10   39.8   0.9    2.0  2  PF13431.1  Tetratricopeptide repeat
    1.1e-20   72.9   6.0    1.3e-13   50.2   3.2    2.0  2  PF13414.1  TPR repeat
    1.9e-18   66.0   6.0    8.6e-11   41.5   1.4    2.1  2  PF13424.1  Tetratricopeptide repeat
    6.2e-14   52.1   5.2    1.6e-07   31.6   0.1    2.0  2  PF13432.1  Tetratricopeptide repeat
    1.8e-13   49.3  17.9    6.4e-08   31.7   3.5    4.7  3  PF00515.23 Tetratricopeptide repeat
    1.9e-11   43.3   3.5    1.2e-05   24.8   0.1    2.3  2  PF13374.1  Tetratricopeptide repeat
      1e-08   34.3   9.1    1.3e-06   27.7   1.0    3.9  3  PF07719.12 Tetratricopeptide repeat
      1e-08   34.9   0.3    5.5e-05   23.3   0.0    3.0  3  PF13428.1  Tetratricopeptide repeat
      1e-07   31.0   9.9    2.2e-05   23.8   1.0    3.0  3  PF13181.1  Tetratricopeptide repeat
    3.9e-07   29.4   0.7     0.0043   16.1   0.1    2.0  2  PF10373.4  Est1 DNA/RNA binding domain
    1.2e-06   27.6   2.6     0.0015   18.0   0.1    3.1  3  PF13176.1  Tetratricopeptide repeat
    0.00026   21.4   2.3      0.024   15.1   0.1    2.9  3  PF08238.7  Sel1 repeat
    0.00033   20.7   3.9       0.01   16.1   0.1    2.8  3  PF13174.1  Tetratricopeptide repeat
     0.0051   15.7   0.2      0.053   12.4   0.2    1.8  2  PF02259.18 FAT domain
     0.0069   16.0   5.9        0.5   10.1   0.1    3.2  3  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.03   14.2   2.6       0.48   10.3   0.1    2.4  3  PF09094.6  Domain of unknown function (DUF1925)
      0.036   13.1   0.1      0.042   12.9   0.1    1.1  1  PF04733.9  Coatomer epsilon subunit
       0.04   12.2   0.0        2.4    6.3   0.0    1.9  2  PF07340.6  Cytomegalovirus IE1 protein
      0.046   13.6   0.1      0.061   13.2   0.1    1.2  1  PF14346.1  Domain of unknown function (DUF4398)
      0.054   13.3   0.0        2.5    7.9   0.0    2.2  2  PF08234.7  Chromosome segregation protein Spc25
      0.072   12.9   0.1        7.2    6.5   0.0    2.0  2  PF08321.7  PPP5 TPR repeat region
      0.073   13.3   0.2         11    6.4   0.0    2.3  2  PF08075.6  NOPS (NUC059) domain
       0.63    9.8   4.5       0.69    9.7   0.3    2.7  2  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   3.4e-12     2e-09       1      34 []       3      37 ..       3      37 .. 0.93
   2 !   39.8   0.9   3.6e-13   2.2e-10       1      34 []      38      72 ..      38      72 .. 0.94

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 3.4e-12
  PF13431.1  1 lyekaleldPnnadaynnLAellln.nGdleeAeq 34
               +y+ka+e dP+ a aynnL++ll+n +++++eAeq
  MMETSP0890-20130614|556_1  3 MYRKAIEVDPKFAIAYNNLGVLLYNvRKKYDEAEQ 37
               7********************99984689****98 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 3.6e-13
  PF13431.1  1 lyekaleldPnnadaynnLAellln.nGdleeAeq 34
               +y+ka+eldPn+a+aynnL+ ll+n ++++++Aeq
  MMETSP0890-20130614|556_1 38 MYRKAIELDPNYANAYNNLGILLKNvRKKYDQAEQ 72
               7***********************84689****98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.5e-08   2.1e-05      24      50 ..       2      28 ..       1      30 [. 0.92
   2 !   50.2   3.2   2.2e-16   1.3e-13      16      61 ..      29      74 ..      25      75 .] 0.94

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.5e-08
  PF13414.1 24 eayekAleldpnnaelyynlAlaylkl 50
               ++y+kA+e dp+ a++y+nl+ ++++ 
  MMETSP0890-20130614|556_1  2 QMYRKAIEVDPKFAIAYNNLGVLLYNV 28
               79*********************9985 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 2.2e-16
  PF13414.1 16 egdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledy 61
               +++ydeA+++y+kA+eldpn+a++y+nl+ ++ +  k+y++A ++y
  MMETSP0890-20130614|556_1 29 RKKYDEAEQMYRKAIELDPNYANAYNNLGILLKNVRKKYDQAEQMY 74
               89*****************************************998 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   1.6e-10   9.3e-08      33      76 ..       2      46 ..       1      48 [. 0.91
   2 !   41.5   1.4   1.4e-13   8.6e-11       4      70 ..      14      75 .]      12      75 .] 0.92

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.6e-10
  PF13424.1 33 ellrelgddhpdtaralnnlanlyla.lgdydeAleylekAleia 76
               +++r++ + +p  a a+nnl+ l++  +++ydeA+++++kA+e++
  MMETSP0890-20130614|556_1  2 QMYRKAIEVDPKFAIAYNNLGVLLYNvRKKYDEAEQMYRKAIELD 46
               6788889999****************8889*************97 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 1.4e-13
  PF13424.1  4 latilnnlalvlr.rlgdydeAlelyekalellrelgddhpdtaralnnlanlyla.lgdydeAleyle 70
               +a+++nnl+ +l+   ++ydeA+++y+ka+el       +p++a+a+nnl++l+   +++yd+A+++++
  MMETSP0890-20130614|556_1 14 FAIAYNNLGVLLYnVRKKYDEAEQMYRKAIEL-------DPNYANAYNNLGILLKNvRKKYDQAEQMYR 75
               799******77777****************99.......699**************8889******996 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   2.7e-10   1.6e-07      18      65 .]       2      50 ..       1      50 [. 0.95
   2 !   27.9   0.7     4e-09   2.4e-06      10      55 ..      29      75 .]      24      75 .] 0.92

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2.7e-10
  PF13432.1 18 aaleaalalaPeaaeallllaeall.rlgrldeAaallraalalaPddp 65
               + +++a++ +P+ a a+ +l+++l+  ++++deA++ +r+a++l+P+++
  MMETSP0890-20130614|556_1  2 QMYRKAIEVDPKFAIAYNNLGVLLYnVRKKYDEAEQMYRKAIELDPNYA 50
               5799*********************999******************986 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4e-09
  PF13432.1 10 aGdydeAlaaleaalalaPeaaeallllaeall.rlgrldeAaallr 55
               +++ydeA++ +++a++l+P +a+a+ +l+ +l   ++++d+A++ +r
  MMETSP0890-20130614|556_1 29 RKKYDEAEQMYRKAIELDPNYANAYNNLGILLKnVRKKYDQAEQMYR 75
               467******************************999******99876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00047      0.28      22      34 .]       2      14 ..       1      14 [. 0.89
   2 !   31.7   3.5   1.1e-10   6.4e-08       1      34 []      15      49 ..      15      49 .. 0.88
   3 !    7.9   2.6    0.0036       2.2       1      25 [.      50      75 .]      50      75 .] 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00047
                HHHHHHHHHHTTH CS
  PF00515.23 22 eyyekALelnPnn 34
                + y+kA+e++P++
   MMETSP0890-20130614|556_1  2 QMYRKAIEVDPKF 14
                68*********97 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 1.1e-10
                HHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnaylk.lgkydeAleyyekALelnPnn 34
                a a++nlG+++++  +kydeA++ y+kA+el+Pn+
   MMETSP0890-20130614|556_1 15 AIAYNNLGVLLYNvRKKYDEAEQMYRKAIELDPNY 49
                679*****87665389******************7 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0036
                HHHHHHHHHHHHH.TT-HHHHHHHHH CS
  PF00515.23  1 akalynlGnaylk.lgkydeAleyye 25
                a+a++nlG ++ +  +kyd+A++ y+
   MMETSP0890-20130614|556_1 50 ANAYNNLGILLKNvRKKYDQAEQMYR 75
                789******99874789999999996 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   2.1e-08   1.2e-05       2      30 ..      15      44 ..      14      45 .. 0.88
   2 !   19.3   0.3   1.1e-06   0.00067       2      26 ..      50      75 .]      49      75 .] 0.95

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.1e-08
  PF13374.1  2 aaalnnLAlalrar.gryeeAlaleeeala 30
               a a+nnL+++l++  ++y+eA++++++a +
  MMETSP0890-20130614|556_1 15 AIAYNNLGVLLYNVrKKYDEAEQMYRKAIE 44
               679******888888***********9976 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.1e-06
  PF13374.1  2 aaalnnLAlalrar.gryeeAlalee 26
               a a+nnL+++l +  ++y++A+++++
  MMETSP0890-20130614|556_1 50 ANAYNNLGILLKNVrKKYDQAEQMYR 75
               89*********************996 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.046        27      24      33 ..       4      13 ..       1      14 [. 0.86
   2 !   27.7   1.0   2.2e-09   1.3e-06       1      34 []      15      49 ..      15      49 .. 0.94
   3 ?    4.4   0.5     0.063        37       1      24 [.      50      74 ..      50      75 .] 0.75

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.046
                HHHHHHH-TT CS
  PF07719.12 24 fekAleldPn 33
                ++kA+e dP+
   MMETSP0890-20130614|556_1  4 YRKAIEVDPK 13
                9********7 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 2.2e-09
                HHHHHHHHHHHHHTT-H.HHHHHHHHHHHHH-TTS CS
  PF07719.12  1 aealynlGlayyklgdy.eeAleafekAleldPnn 34
                a a++nlG ++y+ ++  +eA++ ++kA+eldPn+
   MMETSP0890-20130614|556_1 15 AIAYNNLGVLLYNVRKKyDEAEQMYRKAIELDPNY 49
                689**********98888***************96 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.063
                HHHHHHHHHHHHHTT-H.HHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdy.eeAleaf 24
                a a++nlG ++ + ++  ++A++ +
   MMETSP0890-20130614|556_1 50 ANAYNNLGILLKNVRKKyDQAEQMY 74
                6789999999988766668887766 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0061       3.6      21      43 ..       1      23 [.       1      24 [. 0.90
   2 !   23.3   0.0   9.2e-08   5.5e-05       4      42 ..      18      57 ..      16      60 .. 0.82
   3 ?    5.6   0.0     0.045        27       2      25 ..      51      75 .]      50      75 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0061
  PF13428.1 21 iallrralalaPddaealllLar 43
               ++++r+a++ +P+ a a+ +L+ 
  MMETSP0890-20130614|556_1  1 EQMYRKAIEVDPKFAIAYNNLGV 23
               689************99999986 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 9.2e-08
  PF13428.1  4 llalaralla.lGdpdeAiallrralalaPddaealllLa 42
               +  l+ +l + +  +deA++++r+a++l+P+ a a+ +L+
  MMETSP0890-20130614|556_1 18 YNNLGVLLYNvRKKYDEAEQMYRKAIELDPNYANAYNNLG 57
               55676655542789*********************99887 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.045
  PF13428.1  2 eallalaralla.lGdpdeAiallr 25
               +a+  l+++l + +  +d+A++++r
  MMETSP0890-20130614|556_1 51 NAYNNLGILLKNvRKKYDQAEQMYR 75
               7888999999874679*******97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.13        77      23      33 ..       3      13 ..       1      14 [. 0.82
   2 !   23.8   1.0   3.6e-08   2.2e-05       3      34 .]      17      49 ..      15      49 .. 0.93
   3 !    8.7   0.5    0.0023       1.4       1      25 [.      50      75 .]      50      75 .] 0.93

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.13
               HHH---HHHH. CS
  PF13181.1 23 ylekalelkpr 33
                ++ka+e +p+
  MMETSP0890-20130614|556_1  3 MYRKAIEVDPK 13
               69*****9995 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 3.6e-08
               -TTT---HHHH.TT-HHHHHHHHH---HHHH.H CS
  PF13181.1  3 ayynlGdiYrq.lGdydkAkeylekalelkprn 34
               ay+nlG ++ +  ++yd+A++ ++ka+el+p++
  MMETSP0890-20130614|556_1 17 AYNNLGVLLYNvRKKYDEAEQMYRKAIELDPNY 49
               79******8888*******************86 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0023
               ---TTT---HHHH.TT-HHHHHHHHH CS
  PF13181.1  1 akayynlGdiYrq.lGdydkAkeyle 25
               a+ay+nlG ++++  ++yd+A++ ++
  MMETSP0890-20130614|556_1 50 ANAYNNLGILLKNvRKKYDQAEQMYR 75
               689*******************9885 PP

>> PF10373.4  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.5e-05     0.056       4      34 ..       3      33 ..       1      35 [. 0.92
   2 !   16.1   0.1   7.3e-06    0.0043       1      36 [.      35      70 ..      35      75 .] 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.5e-05
  PF10373.4  4 YYllAasllPssGnpyNQlaviatyagdeld 34
                Y++A+++ P+   +yN l+v+ + +++++d
  MMETSP0890-20130614|556_1  3 MYRKAIEVDPKFAIAYNNLGVLLYNVRKKYD 33
               5************************999987 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 7.3e-06
  PF10373.4  1 AlrYYllAasllPssGnpyNQlaviatyagdeldav 36
               A++ Y++A++l P++ n+yN l+++   +++++d  
  MMETSP0890-20130614|556_1 35 AEQMYRKAIELDPNYANAYNNLGILLKNVRKKYDQA 70
               7889**********************9999998765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.51     3e+02      21      30 ..       3      10 ..       1      15 [. 0.56
   2 !   18.0   0.1   2.5e-06    0.0015       1      32 [.      17      47 ..      17      49 .. 0.89
   3 !    7.1   0.1    0.0076       4.5       1      23 [.      52      75 .]      52      75 .] 0.93

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.51
  PF13176.1 21 lyeraLaltk 30
               +y++  a++ 
  MMETSP0890-20130614|556_1  3 MYRK--AIEV 10
               4555..4444 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 2.5e-06
  PF13176.1  1 allnLarlysr.lgdyekAielyeraLaltkdp 32
               a++nL++l  + + +y++A+++y++  a++ dp
  MMETSP0890-20130614|556_1 17 AYNNLGVLLYNvRKKYDEAEQMYRK--AIELDP 47
               89******8887*************..887777 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0076
  PF13176.1  1 allnLarlysr.lgdyekAielye 23
               a++nL+ l  + + +y++A+++y+
  MMETSP0890-20130614|556_1 52 AYNNLGILLKNvRKKYDQAEQMYR 75
               799*****999999*******996 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       5.2   3.1e+03      30      35 ..       3       8 ..       1      11 [. 0.71
   2 !   15.1   0.1     4e-05     0.024       1      37 [.      15      45 ..      15      47 .. 0.77
   3 ?    5.1   0.1     0.059        35       1      32 [.      50      75 .]      50      75 .] 0.71

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 5.2
  PF08238.7 30 WyekAA 35
                y+kA 
  MMETSP0890-20130614|556_1  3 MYRKAI 8 
               688885 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4e-05
  PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeq 37
               a A++nLG   +++n    v k +++A++ y+kA e+
  MMETSP0890-20130614|556_1 15 AIAYNNLG--VLLYN----VRKKYDEAEQMYRKAIEL 45
               5699****..42245....555699*********987 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.059
  PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWye 32
               a A++nLG   +++n    v k +++A++ y+
  MMETSP0890-20130614|556_1 50 ANAYNNLG--ILLKN----VRKKYDQAEQMYR 75
               57999999..53344....5556999999997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       3.4     2e+03      21      29 ..       2      10 ..       1      13 [. 0.58
   2 !   16.1   0.1   1.7e-05      0.01       5      32 ..      20      48 ..      17      49 .. 0.94
   3 ?    5.0   0.1     0.058        35       5      24 ..      55      75 .]      50      75 .] 0.84

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 3.4
               HHHHHHHHH CS
  PF13174.1 21 ealerlike 29
               +++++ i+ 
  MMETSP0890-20130614|556_1  2 QMYRKAIEV 10
               456666665 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.7e-05
               HHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
  PF13174.1  5 klalsyyk.lgdtdeAlealerlikeyPd 32
               +l+ ++y+  +++deA +++++ i+  P+
  MMETSP0890-20130614|556_1 20 NLGVLLYNvRKKYDEAEQMYRKAIELDPN 48
               69999**999***************9998 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.058
               HHHHHHHH.HHHHHHHHHHHH CS
  PF13174.1  5 klalsyyk.lgdtdeAleale 24
               +l+ ++++  +++d+A ++++
  MMETSP0890-20130614|556_1 55 NLGILLKNvRKKYDQAEQMYR 75
               57778888779*******996 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.14        82     279     303 ..       2      26 ..       1      32 [. 0.84
   2 !   12.4   0.2   8.8e-05     0.053     272     314 ..      30      72 ..      26      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.14
  PF02259.18 279 kaystatefdpqwykawhswalanf 303
                 ++y++a+e+dp+ + a++++++   
   MMETSP0890-20130614|556_1   2 QMYRKAIEVDPKFAIAYNNLGVLLY 26 
                 89***************99998665 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 8.8e-05
  PF02259.18 272 ekkdeilkaystatefdpqwykawhswalanfevvqaeesekk 314
                 +k de++++y++a+e+dp+ ++a+++++   ++v +++ ++++
   MMETSP0890-20130614|556_1  30 KKYDEAEQMYRKAIELDPNYANAYNNLGILLKNVRKKYDQAEQ 72 
                 6789*************************99999999887665 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.4   8.1e+02      17      29 ..       4      15 ..       2      19 .. 0.72
   2 !   10.1   0.1   0.00083       0.5      15      34 ..      30      47 ..      21      49 .. 0.86
   3 !    7.4   0.2    0.0057       3.4      15      27 ..      65      75 .]      64      75 .] 0.88

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.4
               HHHHHHH..HHHH CS
  PF07720.7 17 yqeArelfsYall 29
               y +A+e++  +++
  MMETSP0890-20130614|556_1  4 YRKAIEVDP-KFA 15
               889999965.555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00083
               T-HHHHHHH..HHHHHHH-T CS
  PF07720.7 15 kkyqeArelfsYallaildk 34
               kky+eA++   Y+ +  ld+
  MMETSP0890-20130614|556_1 30 KKYDEAEQM--YRKAIELDP 47
               9********..998888887 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0057
               T-HHHHHHH..HH CS
  PF07720.7 15 kkyqeArelfsYa 27
               kky++A++   Y+
  MMETSP0890-20130614|556_1 65 KKYDQAEQM--YR 75
               9*******9..75 PP

>> PF09094.6  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.6   3.3e+03      15      26 ..       2      13 ..       1      20 [. 0.63
   2 ?   10.3   0.1   0.00081      0.48       5      30 ..      27      52 ..      23      57 .. 0.85
   3 ?    3.8   0.1     0.084        50       3      17 ..      60      74 ..      57      75 .] 0.88

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 5.6
               HHHHHHHHHHHH CS
  PF09094.6 15 emhkrmlevskk 26
               +m+++ +ev  k
  MMETSP0890-20130614|556_1  2 QMYRKAIEVDPK 13
               567766666555 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00081
               GHHHH-HHHHHHHHHHHHHHHHHTT- CS
  PF09094.6  5 nFlvkYeesnemhkrmlevskklksl 30
               n + kY+e+++m+++ +e+  +++++
  MMETSP0890-20130614|556_1 27 NVRKKYDEAEQMYRKAIELDPNYANA 52
               8899************9998887776 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.084
               GGGHHHH-HHHHHHH CS
  PF09094.6  3 wrnFlvkYeesnemh 17
                +n + kY+++++m+
  MMETSP0890-20130614|556_1 60 LKNVRKKYDQAEQMY 74
               6999**********9 PP

>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     7e-05     0.042     215     254 ..      30      69 ..      19      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7e-05
                --HHHH---HHHHHHH----HHHHHHHHHHHHH----HHH CS
  PF04733.9 215 gryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaev 254
                ++y+eAe++ ++a++ d++++++  Nl ++ +++ k  + 
  MMETSP0890-20130614|556_1  30 KKYDEAEQMYRKAIELDPNYANAYNNLGILLKNVRKKYDQ 69 
                68*************************9999999887665 PP

>> PF07340.6  Cytomegalovirus IE1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0044       2.6     104     135 ..       2      33 ..       1      39 [. 0.84
   2 ?    6.3   0.0    0.0041       2.4      97     137 ..      28      70 ..      23      75 .] 0.80

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0044
  PF07340.6 104 hmlkkytqteekftaafnnmggclqtaldild 135
                +m +k  +++ kf+ a+nn+g  l +     d
  MMETSP0890-20130614|556_1   2 QMYRKAIEVDPKFAIAYNNLGVLLYNVRKKYD 33 
                7999*****************99988766555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0041
  PF07340.6  97 vrqkvk..ehmlkkytqteekftaafnnmggclqtaldildkv 137
                vr+k    e+m +k  +++ +++ a+nn+g  l++     d+ 
  MMETSP0890-20130614|556_1  28 VRKKYDeaEQMYRKAIELDPNYANAYNNLGILLKNVRKKYDQA 70 
                5666541268***********************9988777765 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1    0.0001     0.061      16      56 ..      29      74 ..      25      75 .] 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.0001
  PF14346.1 16 deeleeAeaalerAeaa..gaek.yapv...eLeeAkekLaaAkaal 56
               +++++eAe+ +++A +   + ++ y+ +    L++ ++k ++A++++
  MMETSP0890-20130614|556_1 29 RKKYDEAEQMYRKAIELdpNYANaYN-NlgiLLKNVRKKYDQAEQMY 74
               689************99663333244.2589*************998 PP

>> PF08234.7  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.093        55      59      73 ..      19      33 ..       9      34 .. 0.90
   2 ?    7.9   0.0    0.0042       2.5      56      72 ..      51      67 ..      43      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.093
               --HHHHHHHHHHHHH CS
  PF08234.7 59 ndlrkFlkevRkaFk 73
               n+l+ +l +vRk++ 
  MMETSP0890-20130614|556_1 19 NNLGVLLYNVRKKYD 33
               89**********996 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0042
               HH---HHHHHHHHHHHH CS
  PF08234.7 56 nktndlrkFlkevRkaF 72
               n  n+l+ +lk+vRk++
  MMETSP0890-20130614|556_1 51 NAYNNLGILLKNVRKKY 67
               8889***********98 PP

>> PF08321.7  PPP5 TPR repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.028        17      12      44 ..       2      34 ..       1      38 [. 0.89
   2 ?    6.5   0.0     0.012       7.2      11      44 ..      36      69 ..      34      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.028
  PF08321.7 12 iaFekAIevdeekrsvaesidiesieieddYdg 44
               + + kAIevd +   +++++ +   +++++Yd 
  MMETSP0890-20130614|556_1  2 QMYRKAIEVDPKFAIAYNNLGVLLYNVRKKYDE 34
               5789*****99999999**************86 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.012
  PF08321.7 11 kiaFekAIevdeekrsvaesidiesieieddYdg 44
               ++ + kAIe+d +   +++++ i   +++++Yd 
  MMETSP0890-20130614|556_1 36 EQMYRKAIELDPNYANAYNNLGILLKNVRKKYDQ 69
               57799***************************96 PP

>> PF08075.6  NOPS (NUC059) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018        11      25      38 ..       2      15 ..       1      19 [. 0.90
   2 ?    4.9   0.0     0.051        30      19      39 ..      31      51 ..      28      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.018
  PF08075.6 25 peyqkeReqgPrFa 38
               ++y+k+ e+ P+Fa
  MMETSP0890-20130614|556_1  2 QMYRKAIEVDPKFA 15
               78***********9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.051
  PF08075.6 19 KlvkkspeyqkeReqgPrFae 39
               K  + +++y+k+ e  P +a+
  MMETSP0890-20130614|556_1 31 KYDEAEQMYRKAIELDPNYAN 51
               5777899***********997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3    0.0012      0.69      18      34 ..      29      45 ..       3      45 .. 0.89
   2 ?   -0.1   0.1       1.3   7.9e+02      18      29 ..      64      75 .]      61      75 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0012
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                 +ky+eA + Y++A+el
   MMETSP0890-20130614|556_1 29 RKKYDEAEQMYRKAIEL 45
                579************95 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.3
                TT-HHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYk 29
                 +ky++A + Y+
   MMETSP0890-20130614|556_1 64 RKKYDQAEQMYR 75
                579999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 264.30
//
Query:       MMETSP0890-20130614|557_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-17   60.9   0.9    5.3e-06   25.8   0.0    3.4  3  PF13516.1  Leucine Rich repeat
    5.2e-07   29.0   4.9    0.00046   19.6   1.5    2.7  2  PF12799.2  Leucine Rich repeats (2 copies)
    0.00012   21.5   0.1        0.7   10.2   0.0    3.4  3  PF13504.1  Leucine rich repeat
     0.0034   17.0   3.7      0.091   12.4   2.1    2.7  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.013   15.3   0.1        7.9    6.8   0.0    3.2  3  PF00560.28 Leucine Rich Repeat
      0.015   15.6   0.3          8    7.0   0.0    2.7  3  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0     9e-05      0.21       2      23 ..      23      50 ..      23      51 .. 0.89
   2 !   25.8   0.0   2.3e-09   5.3e-06       1      23 [.      56      78 ..      56      79 .. 0.95
   3 !   20.3   0.1   1.4e-07   0.00031       1      23 [.      84     106 ..      84     107 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9e-05
  PF13516.1  2 knLtsLdL......snNqigdeGlsaLa 23
               ++Lt+LdL      ++ qig eG+ a+a
  MMETSP0890-20130614|557_1 23 PSLTELDLigsvfgGGSQIGAEGAIAIA 50
               79*****998777779**********98 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.3e-09
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L++L+L +N i+deG++aLa
  MMETSP0890-20130614|557_1 56 NTSLKTLNLHRNYIHDEGAKALA 78
               789*******************8 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 1.4e-07
  PF13516.1   1 lknLtsLdLsnNqigdeGlsaLa 23 
                +++L++L L +N+ig eG++aLa
  MMETSP0890-20130614|557_1  84 NTSLKTLLLTDNKIGHEGAKALA 106
                789*******************8 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.4e-06    0.0054       1      38 [.      23      71 ..      23      79 .. 0.68
   2 !   19.6   1.5     2e-07   0.00046       1      37 [.      57      98 ..      57     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.4e-06
  PF12799.2  1 tnLevLdLsnN......nIkdlppe........lanLpnLktLnLsnNpisd 38
               ++L++LdL+++      +   +++e        l+  ++LktLnL +N i d
  MMETSP0890-20130614|557_1 23 PSLTELDLIGSvfgggsQ---IGAEgaiaiataLGTNTSLKTLNLHRNYIHD 71
               678888888885555442...443333333334999**************87 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 2e-07
  PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpis 37
               t+L++L+L +N I d     l   l+  ++LktL L+ N+i 
  MMETSP0890-20130614|557_1 57 TSLKTLNLHRNYIHDegakaLATALSTNTSLKTLLLTDNKIG 98
               79***********87676666555****************95 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.024        54       1       9 [.      23      31 ..      23      43 .. 0.80
   2 !   10.2   0.0   0.00031       0.7       1      14 [.      57      70 ..      57      77 .. 0.91
   3 ?    2.8   0.0     0.084   1.9e+02       1      14 [.      85      98 ..      85     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.024
  PF13504.1  1 pnLkeLdLs 9 
               p+L+eLdL 
  MMETSP0890-20130614|557_1 23 PSLTELDLI 31
               79*****94 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00031
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++Lk+L+L++n+++
  MMETSP0890-20130614|557_1 57 TSLKTLNLHRNYIH 70
               69*********998 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.084
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++Lk+L L +n++ 
  MMETSP0890-20130614|557_1 85 TSLKTLLLTDNKIG 98
               69******999975 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.081   1.9e+02      49      57 ..      23      31 ..      12      35 .. 0.68
   2 !   12.4   2.1     4e-05     0.091      20      61 .]      52      97 ..      48      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.081
  PF13855.1 49 psLreLnLs 57
               psL+eL+L 
  MMETSP0890-20130614|557_1 23 PSLTELDLI 31
               455555553 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4e-05
  PF13855.1 20 aFkglsnLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61
               a++  ++Lk+L+L++n ++       + a++  +sL+ L L +N++
  MMETSP0890-20130614|557_1 52 ALGTNTSLKTLNLHRNYIHdegaKALATALSTNTSLKTLLLTDNKI 97
               6777899***********7444444556699999*******99997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.25   5.8e+02       1       8 [.      24      31 ..      24      35 .. 0.83
   2 ?    6.8   0.0    0.0034       7.9       1      13 [.      58      70 ..      58      84 .. 0.83
   3 ?    3.7   0.0     0.037        83       1      13 [.      86      98 ..      86     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.25
                TESEEEET CS
  PF00560.28  1 nLeeLdLs 8 
                +L+eLdL 
   MMETSP0890-20130614|557_1 24 SLTELDLI 31
                69****95 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0034
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++L+L +N + 
   MMETSP0890-20130614|557_1 58 SLKTLNLHRNYIH 70
                69********987 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.037
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++L L +N++ 
   MMETSP0890-20130614|557_1 86 SLKTLLLTDNKIG 98
                69********997 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.6   8.1e+03       1       7 [.      24      30 ..      20      38 .. 0.58
   2 ?    7.0   0.0    0.0035         8       1      10 [.      58      67 ..      58      74 .. 0.85
   3 ?    6.0   0.0    0.0071        16       1      12 [.      86      97 ..      86     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.6
  PF07723.8  1 sLKtLhL 7 
               sL  L L
  MMETSP0890-20130614|557_1 24 SLTELDL 30
               3444555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0035
  PF07723.8  1 sLKtLhLdsv 10
               sLKtL+L+++
  MMETSP0890-20130614|557_1 58 SLKTLNLHRN 67
               8******985 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0071
  PF07723.8  1 sLKtLhLdsvdf 12
               sLKtL L  +++
  MMETSP0890-20130614|557_1 86 SLKTLLLTDNKI 97
               8******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 429.82
//
Query:       MMETSP0890-20130614|555_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   23.9   0.0       0.05   13.1   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.7e-06      0.05      31      56 ..       4      29 ..       1      35 [. 0.80
   2 !   10.7   0.0   2.1e-05      0.29      18      47 ..      28      57 .]      24      57 .] 0.93

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.7e-06
  PF06743.10 31 reLdsispelllnlvwSlclleyfpv 56
                ++Lds++p++l n+ w+++ +    +
   MMETSP0890-20130614|555_1  4 TKLDSFKPQALTNTTWAFATASVEAP 29
                799***************98765555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.1e-05
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwS 47
                a ++f+++  a  ++Ld++ p++l n+ w+
   MMETSP0890-20130614|555_1 28 APALFNAITAAALKKLDGFTPQALANTAWA 57
                6789************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 203.87
//
Query:       MMETSP0890-20130614|559_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   13.3   0.9      0.063   13.1   0.6    1.1  1  PF11083.3 Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> PF11083.3  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   4.6e-06     0.063      37      88 ..      23      74 ..      11      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.6e-06
  PF11083.3 37 klakydfsklNltesitleqvekeikklqeelekeldeYEklvrrLekfvkv 88
               +   yd  +  + e + + +v   i+k q  ++ ++ +YEk    ++++ + 
  MMETSP0890-20130614|559_1 23 QCNEYDRIHQEIQEDVDIGNVLIRIEKYQVAIDFNRRNYEKYLLNINEYPEL 74
               4556777777899*********************************999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 436.48
//
Query:       MMETSP0890-20130614|565_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.46s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 262.61
//
Query:       MMETSP0890-20130614|562_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-07   30.6   0.0     0.0026   17.3   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
    3.9e-05   23.0   1.3      0.098   12.1   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)
  ------ inclusion threshold ------
       0.11   11.8   0.1         17    4.8   0.0    2.3  2  PF12554.3  Mitotic-spindle organizing gamma-tubulin ring associated
       0.83    9.4   7.6        3.8    7.3   1.6    2.0  2  PF05836.7  Chorion protein S16


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.6e-07    0.0026      18      50 ..       6      38 ..       3      42 .. 0.92
   2 !   12.0   0.0   3.4e-05      0.12      19      47 ..      44      72 .]      39      72 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.6e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Ld+++p++l n+ w+++ 
   MMETSP0890-20130614|562_1  6 APALFNAIAAAALKKLDGFNPQALANTAWAFAT 38
                5789***************************96 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.4e-05
  PF06743.10 19 eeffeklasalereLdsispelllnlvwS 47
                  +f+++a a  ++Ld+++p++l n+ w+
   MMETSP0890-20130614|562_1 44 PDLFNAIADAALTKLDGFNPQALANTAWA 72
                5699***********************97 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   2.9e-05     0.098      17      36 ..       9      32 ..       6      32 .. 0.93
   2 !   10.1   0.1   0.00013      0.43      17      36 ..      46      69 ..      43      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-05
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+    +    FNpQ  ANt
  MMETSP0890-20130614|562_1  9 LFNAIAaaalKKLDGFNPQALANT 32
               999***9****************9 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00013
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+         FNpQ  ANt
  MMETSP0890-20130614|562_1 46 LFNAIAdaalTKLDGFNPQALANT 69
               888888888888999********9 PP

>> PF12554.3  Mitotic-spindle organizing gamma-tubulin ring associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.005        17      34      42 ..      23      31 ..      21      32 .. 0.87
   2 ?    4.8   0.0     0.005        17      34      42 ..      60      68 ..      58      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.005
  PF12554.3 34 GVnPeaLAe 42
               G nP+aLA+
  MMETSP0890-20130614|562_1 23 GFNPQALAN 31
               78******7 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.005
  PF12554.3 34 GVnPeaLAe 42
               G nP+aLA+
  MMETSP0890-20130614|562_1 60 GFNPQALAN 68
               78******7 PP

>> PF05836.7  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.6    0.0011       3.8      15      49 ..       2      35 ..       1      39 [. 0.81
   2 ?    5.2   0.8    0.0048        16      13      48 ..      37      71 ..      34      72 .] 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
  PF05836.7 15 aeaqaaaltnaaGaaasaakldgadwdalnryGye 49
               a  +a al na   aa+  kldg + +al    + 
  MMETSP0890-20130614|562_1  2 ASVEAPALFNAIA-AAALKKLDGFNPQALANTAWA 35
               6678999**9875.56678*********9988885 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0048
  PF05836.7 13 etaeaqaaaltnaaGaaasaakldgadwdalnryGy 48
               +ta  +a  l na  a a+ +kldg + +al    +
  MMETSP0890-20130614|562_1 37 ATASVEAPDLFNAI-ADAALTKLDGFNPQALANTAW 71
               57778888899976.778899******999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|571_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-44  147.5   0.0    3.1e-17   61.6   0.0    3.0  3  PF13475.1 Domain of unknown function (DUF4116)
     0.0047   16.4   0.0        3.4    7.3   0.0    3.5  3  PF07892.6 Protein of unknown function (DUF1667)
  ------ inclusion threshold ------
      0.051   13.6   0.6        5.5    7.1   0.0    2.7  3  PF09575.5 Small spore protein J (Spore_SspJ)
       0.11   12.1   0.1        3.9    7.2   0.0    2.6  3  PF09837.4 Uncharacterized protein conserved in bacteria (DUF2064)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   9.1e-21   3.1e-17       1      41 [.       4      44 ..       4      45 .. 0.98
   2 !   31.3   0.0   2.7e-11   9.3e-08      22      49 .]      49      76 ..      46      76 .. 0.95
   3 !   51.4   0.0   1.4e-17   4.9e-14       1      34 [.      78     111 ..      78     112 .] 0.98

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 9.1e-21
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsal 41
               DrEivl+av++ng+al+y+s eLknD+eivl+Av q+g+al
  MMETSP0890-20130614|571_1  4 DREIVLAAVTQNGYALEYASQELKNDREIVLAAVTQSGYAL 44
               9**************************************98 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 2.7e-11
  PF13475.1 22 eLknDkeivlkAvkqngsalsyaseeLr 49
               e+ nD+eivl Av qngsal ya+eeL+
  MMETSP0890-20130614|571_1 49 EFINDREIVLTAVTQNGSALLYACEELK 76
               789************************8 PP

  == domain 3    score: 51.4 bits;  conditional E-value: 1.4e-17
  PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAv 34 
                DrEivl av+++g al+++s+eLknD+eivl+A+
  MMETSP0890-20130614|571_1  78 DREIVLIAVTQDGLALEFASDELKNDREIVLAAI 111
                9********************************8 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00099       3.4       4      26 ..      19      41 ..      16      46 .. 0.87
   2 ?    0.4   0.0      0.14   4.8e+02       9      27 ..      48      66 ..      41      70 .. 0.84
   3 ?    4.0   0.0     0.011        36       6      32 ..      70      96 ..      65     111 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00099
  PF07892.6  4 eeYakkeltnpkriltstVkveg 26
                eYa +el+n + i+ + V  +g
  MMETSP0890-20130614|571_1 19 LEYASQELKNDREIVLAAVTQSG 41
               69**************9998665 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.14
  PF07892.6  9 keltnpkriltstVkvegg 27
               +e++n + i+ + V  +g+
  MMETSP0890-20130614|571_1 48 QEFINDREIVLTAVTQNGS 66
               7999999999999987775 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.011
  PF07892.6  6 YakkeltnpkriltstVkveggelplv 32
               Ya +el++ + i+   V  +g  l++ 
  MMETSP0890-20130614|571_1 70 YACEELKHDREIVLIAVTQDGLALEFA 96
               777788888777777777666555544 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0016       5.5      22      33 ..      18      29 ..      11      31 .. 0.90
   2 ?   -2.2   0.0       1.3   4.3e+03      22      33 ..      67      78 ..      63      79 .. 0.78
   3 ?    4.0   0.1     0.016        53      22      33 ..      92     103 ..      85     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
  PF09575.5 22 aLEdAgkaLkgD 33
               aLE A+++Lk+D
  MMETSP0890-20130614|571_1 18 ALEYASQELKND 29
               8*********99 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.3
  PF09575.5 22 aLEdAgkaLkgD 33
               aL  A ++Lk D
  MMETSP0890-20130614|571_1 67 ALLYACEELKHD 78
               566688999988 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.016
  PF09575.5  22 aLEdAgkaLkgD 33 
                aLE A+ +Lk+D
  MMETSP0890-20130614|571_1  92 ALEFASDELKND 103
                8*********99 PP

>> PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.29   9.9e+02      90     104 ..       5      19 ..       3      20 .. 0.85
   2 ?    7.2   0.0    0.0011       3.9      79     104 ..      18      44 ..      11      62 .. 0.89
   3 ?    2.4   0.0     0.033   1.1e+02      79     101 ..      67      90 ..      60      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.29
  PF09837.4  90 adlVlgpaeDGGYyL 104
                 ++Vl + ++ GY L
  MMETSP0890-20130614|571_1   5 REIVLAAVTQNGYAL 19 
                5799*********87 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0011
  PF09837.4  79 llaqafeaLer.adlVlgpaeDGGYyL 104
                 l+ a ++L++  ++Vl + ++ GY L
  MMETSP0890-20130614|571_1  18 ALEYASQELKNdREIVLAAVTQSGYAL 44 
                588999*****88************87 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.033
  PF09837.4  79 llaqafeaLer.adlVlgpaeDGG 101
                 l  a+e+L++  ++Vl + ++ G
  MMETSP0890-20130614|571_1  67 ALLYACEELKHdREIVLIAVTQDG 90 
                57789******7799988765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.89
# Mc/sec: 301.56
//
Query:       MMETSP0890-20130614|567_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.61
# Mc/sec: 322.13
//
Query:       MMETSP0890-20130614|581_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-41  142.0   0.0    2.6e-41  141.7   0.0    1.1  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   1.9e-45   2.6e-41      21     360 ..     110     481 ..      90     484 .. 0.86

  Alignments for each domain:
  == domain 1    score: 141.7 bits;  conditional E-value: 1.9e-45
                 HHHHHHHHH.HCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-....HHHHH.HHHHHH-S-EEEEE--CCCC.TBGGG----EEEE-...HHHHHHHHHCCTTTS.-----CCHHHHCTSHHHHHH......HHHHHHHHHHHHHHHHHHCC.CC.-TCHHHH----EE-----HH.......HH............HCCH---BE--...........---EE-----TTTHHHHH CS
  PF00155.16  21 pevakaeke.galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl....davat.ranveeepnllivgslsKaf.GlaGeRvGyilgna...avvsqlrklsrpfls.ssllqaavaaalsdallkqs......eleemrqrlqkrrkelrdeLael.glkvlasqsgmflltdlsae.takelskk............Lleevgvyvtpgtsftv...pgrlRitvAglteeeleelv 360
                  e++++++  + +++g++  y++++gl  ++ ++ +f++++ + + ++e ++ ++ Ga+ ++ ++i+l+   pgd+ l+p+p+y+ y+  + ls g++ +y l++++++   ++++e+a+++a ++ + ++ ++v +p NPtG+ +++  le++++++++++++l+ De+Y++ v+++     ++ ++ r + ++++ l+   s sK f G  G+R Gy        +   ql kl++  l    ++q av  +++ +   q       + +e  + l++r+ ++ ++L++l g+++ + q++m+l+  ++    a ++++k            Lle  g++v+pg+ f+    + ++R t+   +e++++ ++
   MMETSP0890-20130614|581_1 110 SEIIERARYySNGMTGGIGAYTDSKGLRIVRDEIVQFIQNRDGYPSDPE-SIFLTDGASGAAKLIIQLIMRGPGDALLAPAPSYPLYSALAALSNGTIASYYLDEAKQWDAPVKEIERAYNDAIANGQTPRALVVINPGNPTGASLSRSALEDIVRFCQRNHVVLLADEVYQENVYTGAppfiSFKQIvRDLRADDVTLASFHSISKGFtGECGLRGGYMELANldpEAMTQLLKLASLTLCaNVIGQLAVGLMVHPPASNQIaakytkDRDEKLASLERRALKIAKALDALpGISCDKAQGAMYLFPNIDIPpLAVAAARKrnlqpdafyalnLLEATGLVVVPGSGFGQlngTWHFRTTF-LPPEDDIDVVI 481
                 5667777778999************************************.****************99999*********************************************************************************************************9877555555557777777777*********************8663336677777777777666647788888888888777655488855566666666777777888888888***************98886665777777778888899999*****************999888999999.66666676666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:01.09
# Mc/sec: 1108.04
//
Query:       MMETSP0890-20130614|578_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.76
# Mc/sec: 712.60
//
Query:       MMETSP0890-20130614|584_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1489.63
//
Query:       MMETSP0890-20130614|585_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  111.9  17.8    1.4e-22   79.9   0.6    2.9  3  PF01280.15 Ribosomal protein L19e
  ------ inclusion threshold ------
      0.014   14.7   0.1      0.055   12.7   0.0    2.1  2  PF01479.20 S4 domain
      0.087   12.6   0.7       0.25   11.1   0.5    1.8  1  PF09610.5  Mycoplasma virulence signal region (Myco_arth_vir_N)


Domain annotation for each model (and alignments):
>> PF01280.15  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.6     3e-26   1.4e-22       3      71 ..      14      82 ..      12      85 .. 0.96
   2 !   42.9   1.4   7.6e-15   3.5e-11     107     148 .]     119     160 ..     116     160 .. 0.95
   3 ?   -1.1   1.1      0.27   1.2e+03      62      85 ..     165     188 ..     158     196 .. 0.45

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 3e-26
                THHHHHHHHHHTT---TTEEE-GGG---TTT--SHHHHHHHHH---EEE----------HHHHHHHHH- CS
  PF01280.15  3 lklqkrlAasilkvGknrvwldpeeleeiaeaitredirklikeglikkkkkkghSraRarkrkekkrk 71
                l+lqkrlAas+lk Gknrvwldp+e++ei +a++r++irklik+gl+++ ++ +hSr+R++++ e+k+k
   MMETSP0890-20130614|585_1 14 LTLQKRLAASVLKAGKNRVWLDPNEANEIGMANSRQNIRKLIKDGLVIRLPVVVHSRSRVKRHLEAKKK 82
                789************************************************************999987 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 7.6e-15
                 HHHH-----HHHHHHHHHH------SSHHHHHHHHT------ CS
  PF01280.15 107 klrdekkidkktYrelYrkakGnvfknkahLkeaiekkkaek 148
                 k+r++kkid++ Y++lY+++kGn+fknk++L+eai+k kaek
   MMETSP0890-20130614|585_1 119 KYRQAKKIDSHLYHDLYMRSKGNQFKNKRVLMEAIHKLKAEK 160
                 89***********************************99886 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.27
                 HHHHHHHHH--------------- CS
  PF01280.15  62 arkrkekkrkgrrrgaGkrkGtke 85 
                 + +++++ rk++ + + +rk +++
   MMETSP0890-20130614|585_1 165 TLNEQAEARKNKAKMKSERKASRK 188
                 333333333334444444444444 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05     0.055       9      28 ..      41      60 ..      39      62 .. 0.94
   2 ?   -1.9   0.0      0.45     2e+03       6      21 ..      66      75 ..      61      81 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
                HHH--SSHHHHHHHHHTT-E CS
  PF01479.20  9 rlglassrseArqlIehGhV 28
                ++g+a sr+ +r+lI++G V
   MMETSP0890-20130614|585_1 41 EIGMANSRQNIRKLIKDGLV 60
                68****************98 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.45
                HHHHHH--SSHHHHHH CS
  PF01479.20  6 vLarlglassrseArq 21
                v+      +srs +++
   MMETSP0890-20130614|585_1 66 VV------HSRSRVKR 75
                55......35555555 PP

>> PF09610.5  Mycoplasma virulence signal region (Myco_arth_vir_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   5.5e-05      0.25       4      18 ..      79      93 ..      78      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.5e-05
  PF09610.5  4 lKKKKnkILvlalvA 18
               +KKKK  ILv++ v+
  MMETSP0890-20130614|585_1 79 AKKKKVDILVMVNVT 93
               7**********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1975  (0.144456); expected 273.4 (0.02)
Passed bias filter:                      681  (0.0498098); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.61
# Mc/sec: 813.19
//
Query:       MMETSP0890-20130614|586_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       103  (0.00753365); expected 273.4 (0.02)
Passed bias filter:                      101  (0.00738736); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 285.08
//
Query:       MMETSP0890-20130614|588_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-37  126.4   0.6    3.5e-24   84.4   0.1    1.7  2  PF13424.1  Tetratricopeptide repeat
    1.4e-25   88.2   2.6    2.1e-14   52.7   0.1    3.0  3  PF13374.1  Tetratricopeptide repeat
    2.8e-15   55.0   2.5    5.6e-07   28.7   0.1    2.2  2  PF00515.23 Tetratricopeptide repeat
    5.5e-14   50.7   2.7    1.2e-06   27.8   0.2    2.2  2  PF07719.12 Tetratricopeptide repeat
    2.5e-13   48.5   0.3    3.8e-06   26.1   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
    2.9e-13   49.1   1.6    4.3e-13   48.5   0.9    1.4  2  PF13414.1  TPR repeat
    2.6e-09   36.0   1.5     0.0013   18.2   0.1    2.2  2  PF13181.1  Tetratricopeptide repeat
    5.5e-08   32.6   0.3     0.0015   18.9   0.1    2.2  2  PF13428.1  Tetratricopeptide repeat
    8.8e-08   32.5   1.1    1.7e-07   31.6   0.7    1.5  1  PF13432.1  Tetratricopeptide repeat
    9.1e-08   31.6   8.2     0.0095   15.9   0.5    3.7  3  PF13431.1  Tetratricopeptide repeat
    3.1e-05   23.8   0.1       0.19   11.6   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat
    6.5e-05   22.6   0.5       0.35   10.6   0.0    2.2  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00011   22.2   0.2       0.27   11.6   0.0    2.3  2  PF13174.1  Tetratricopeptide repeat
    0.00025   20.9   0.0     0.0005   20.0   0.0    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0067   16.5   0.2        3.8    7.7   0.0    3.1  3  PF07554.8  Uncharacterised Sugar-binding Domain
  ------ inclusion threshold ------
       0.02   14.5   0.0        2.3    7.8   0.0    2.0  2  PF08311.7  Mad3/BUB1 homology region 1
       0.12   12.0   0.2        5.9    6.6   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
       0.13   12.5   0.0         15    6.0   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   3.8e-15   2.9e-12      31      77 ..       2      49 ..       1      50 [. 0.95
   2 !   84.4   0.1   4.5e-27   3.5e-24       1      75 [.      14      89 ..      14      92 .] 0.98

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 3.8e-15
  PF13424.1 31 alel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               a+e+  ++lg++hp++a+ lnnla l++ +g+ydeA++++e+A+ei e
  MMETSP0890-20130614|588_1  2 AIEIgEKTLGPNHPNLATWLNNLAGLLRNQGKYDEAKPLYERAIEIGE 49
               789999***************************************965 PP

  == domain 2    score: 84.4 bits;  conditional E-value: 4.5e-27
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
               hp+lat lnnla++lr +g+ydeA  lye+a+e+  + lg++hp++a +lnnla l++ +g+y eA++++e+A+ei
  MMETSP0890-20130614|588_1 14 HPNLATWLNNLAGLLRNQGKYDEAKPLYERAIEIgEEALGPNHPNVAPYLNNLAGLLESQGKYNEAKPLYERAIEI 89
               99************************************************************************99 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0038       2.9      29      42 .]       3      16 ..       1      16 [. 0.85
   2 !   52.7   0.1   2.8e-17   2.1e-14       1      42 []      17      58 ..      17      58 .. 0.97
   3 !   26.9   0.1   3.5e-09   2.7e-06       5      31 ..      63      89 ..      60      91 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0038
  PF13374.1 29 lairrrllGddHPd 42
                +i ++ lG++HP+
  MMETSP0890-20130614|588_1  3 IEIGEKTLGPNHPN 16
               67889********5 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 2.8e-17
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +lr++g+y+eA +l+e+a +i ++ lG++HP+
  MMETSP0890-20130614|588_1 17 LATWLNNLAGLLRNQGKYDEAKPLYERAIEIGEEALGPNHPN 58
               699**************************************5 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 3.5e-09
  PF13374.1  5 lnnLAlalrargryeeAlaleeealai 31
               lnnLA +l  +g+y+eA +l+e+a +i
  MMETSP0890-20130614|588_1 63 LNNLAGLLESQGKYNEAKPLYERAIEI 89
               9***********************987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   7.3e-10   5.6e-07       3      30 ..      20      47 ..      18      50 .. 0.93
   2 !   26.6   0.1   3.6e-09   2.7e-06       2      30 ..      61      89 ..      60      91 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 7.3e-10
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALel 30
                 l+nl+ +++++gkydeA   ye+A+e+
   MMETSP0890-20130614|588_1 20 WLNNLAGLLRNQGKYDEAKPLYERAIEI 47
                68*************************8 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 3.6e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                  l+nl+ ++ ++gky+eA   ye+A+e+
   MMETSP0890-20130614|588_1 61 PYLNNLAGLLESQGKYNEAKPLYERAIEI 89
                679************************98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   1.6e-09   1.2e-06       1      30 [.      18      47 ..      18      51 .. 0.93
   2 !   23.4   0.1   4.1e-08   3.1e-05       2      30 ..      61      89 ..      60      91 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.6e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a +l+nl+ +++++g+y+eA+ ++e+A+e+
   MMETSP0890-20130614|588_1 18 ATWLNNLAGLLRNQGKYDEAKPLYERAIEI 47
                679*************************98 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 4.1e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                 +l+nl+ +++ +g+y+eA+ ++e+A+e+
   MMETSP0890-20130614|588_1 61 PYLNNLAGLLESQGKYNEAKPLYERAIEI 89
                689************************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     5e-09   3.8e-06       2      32 ..      21      51 ..      19      55 .. 0.87
   2 !   20.7   0.0   2.7e-07    0.0002       2      28 ..      63      89 ..      63      92 .] 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
               l+nLa l +++g+y++A  lyera+++ ++ 
  MMETSP0890-20130614|588_1 21 LNNLAGLLRNQGKYDEAKPLYERAIEIGEEA 51
               79*********************88776665 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 2.7e-07
  PF13176.1  2 llnLarlysrlgdyekAielyeraLal 28
               l+nLa l +++g+y +A  lyera+++
  MMETSP0890-20130614|588_1 63 LNNLAGLLESQGKYNEAKPLYERAIEI 89
               89*********************6654 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.69   5.2e+02      32      44 ..      10      25 ..       2      25 .. 0.62
   2 !   48.5   0.9   5.6e-16   4.3e-13       3      67 ..      18      89 ..      16      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.69
  PF13414.1 32 ldpnnae...lyynlA 44
               l pn+++    ++nlA
  MMETSP0890-20130614|588_1 10 LGPNHPNlatWLNNLA 25
               4588887554556665 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 5.6e-16
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               A  l++l+  l ++g+ydeA  +ye+A+e+      pn+++   +++nlA +++ +g +y eA   ye+A+e+
  MMETSP0890-20130614|588_1 18 ATWLNNLAGLLRNQGKYDEAKPLYERAIEIGeealgPNHPNvapYLNNLAGLLESQG-KYNEAKPLYERAIEI 89
               55689***********************9844444488888888*************.6************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.7e-06    0.0013       4      30 ..      21      47 ..      17      50 .. 0.93
   2 !   17.2   0.1   3.6e-06    0.0027       2      30 ..      61      89 ..      60      91 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.7e-06
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++r+ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|588_1 21 LNNLAGLLRNQGKYDEAKPLYERAIEI 47
               579999*******************98 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 3.6e-06
               --TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
               ++++nl+ ++++ G+y +Ak  +e+a+e+
  MMETSP0890-20130614|588_1 61 PYLNNLAGLLESQGKYNEAKPLYERAIEI 89
               7899***********************98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.9e-06    0.0015       4      33 ..      20      50 ..      17      63 .. 0.79
   2 !   12.4   0.0   0.00023      0.17       5      30 ..      64      89 ..      59      92 .] 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-06
  PF13428.1  4 ll.alarallalGdpdeAiallrralalaPd 33
               +l  la +l+++G +deA  l++ra++ + +
  MMETSP0890-20130614|588_1 20 WLnNLAGLLRNQGKYDEAKPLYERAIEIGEE 50
               55379********************995544 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00023
  PF13428.1  5 lalarallalGdpdeAiallrralal 30
                 la +l+ +G + eA  l++ra++ 
  MMETSP0890-20130614|588_1 64 NNLAGLLESQGKYNEAKPLYERAIEI 89
               579********************986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.7   2.2e-10   1.7e-07       3      59 ..      24      88 ..      22      91 .. 0.95

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2.2e-10
  PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
               lA +l ++G+ydeA +++e+a++          P  a +l +la +l  +g++ eA  l+++a++
  MMETSP0890-20130614|588_1 24 LAGLLRNQGKYDEAKPLYERAIEIGeealgpnhPNVAPYLNNLAGLLESQGKYNEAKPLYERAIE 88
               8999**************************99999**************************9986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.6e-05     0.012       9      33 ..      14      38 ..      13      39 .. 0.95
   2 !   15.9   0.5   1.2e-05    0.0095       1      33 [.      40      80 ..      40      81 .. 0.79
   3 ?    2.1   0.0      0.32   2.5e+02       1       8 [.      82      89 ..      82      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
               +Pn a  +nnLA ll n+G+++eA+
  MMETSP0890-20130614|588_1 14 HPNLATWLNNLAGLLRNQGKYDEAK 38
               8**********************97 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.2e-05
  PF13431.1  1 lyekalel........dPnnadaynnLAelllnnGdleeAe 33
               lye+a+e+        +Pn a+ +nnLA ll ++G++ eA+
  MMETSP0890-20130614|588_1 40 LYERAIEIgeealgpnHPNVAPYLNNLAGLLESQGKYNEAK 80
               68888888554443334777*******************96 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.32
  PF13431.1  1 lyekalel 8 
               lye+a+e+
  MMETSP0890-20130614|588_1 82 LYERAIEI 89
               7*****97 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00053      0.41       7      31 ..      24      48 ..      18      55 .. 0.84
   2 !   11.6   0.0   0.00025      0.19       6      31 ..      65      90 ..      60      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00053
  PF12688.2  7 ragarDstGeeakAvplYrrAlaaG 31
                ag     G+ ++A plY+rA++ G
  MMETSP0890-20130614|588_1 24 LAGLLRNQGKYDEAKPLYERAIEIG 48
               57888889999**********9987 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00025
  PF12688.2  6 eragarDstGeeakAvplYrrAlaaG 31
               + ag  +s G+ ++A plY+rA++ G
  MMETSP0890-20130614|588_1 65 NLAGLLESQGKYNEAKPLYERAIEIG 90
               56999*****************9976 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00046      0.35      17      38 ..      30      51 ..      28      55 .. 0.88
   2 !   10.2   0.1   0.00063      0.48      16      34 ..      71      89 ..      65      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00046
                HTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlqa 38
                ++gky+eA  lY+ A+e+ ++a
   MMETSP0890-20130614|588_1 30 NQGKYDEAKPLYERAIEIGEEA 51
                689*************986665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00063
                HHTT-HHHHHHHHHHHHHH CS
  PF04212.13 16 DeagkyeeAlelYkeAlel 34
                + +gky+eA  lY+ A+e+
   MMETSP0890-20130614|588_1 71 ESQGKYNEAKPLYERAIEI 89
                889**************96 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00036      0.27       6      28 ..      24      46 ..      23      47 .. 0.86
   2 !    8.7   0.0     0.003       2.3       6      28 ..      66      88 ..      65      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00036
               HHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerlik 28
               la +++++g++deA+ ++er i+
  MMETSP0890-20130614|588_1 24 LAGLLRNQGKYDEAKPLYERAIE 46
               666788899***********997 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.003
               HHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerlik 28
               la +++ +g++ eA+ ++er i+
  MMETSP0890-20130614|588_1 66 LAGLLESQGKYNEAKPLYERAIE 88
               566677899***********997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.6e-07    0.0005       8      83 ..       2      85 ..       1      86 [. 0.79

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 6.6e-07
               HHHHHHHHCCC-ST-HHHHCHHH.HHHHHHH---HHHHHHHHHC......TSHCHCB.HHHHH..HHHHHHHHTT-HHHHCCCHHH CS
  PF12895.2  8 Alflaekllaespkdpedaylya.lAlclylngeykrAyellrk......leldsss.lgcry..llArcllklgkydeAiavLek 83
               A+ ++ek l  ++  p+ a +++ lA  l ++g+y++A  l+++      + l +++   + y   lA  l+ +gky+eA  ++e+
  MMETSP0890-20130614|588_1  2 AIEIGEKTLGPNH--PNLATWLNnLAGLLRNQGKYDEAKPLYERaieigeEALGPNHpNVAPYlnNLAGLLESQGKYNEAKPLYER 85
               6777777777765..689999999***********9999999999999987777777423344224579999********999987 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.16   1.2e+02      27      45 ..       2      17 ..       1      19 [. 0.76
   2 !    7.7   0.0     0.005       3.8      13      45 ..      34      59 ..      23      60 .. 0.82
   3 ?    2.8   0.0      0.17   1.3e+02       8      31 ..      71      90 ..      63      92 .] 0.69

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.16
               HHHHHHHHH...TSTTTTC CS
  PF07554.8 27 AitaAkaiLnntngpnatq 45
               Ai++ +++L ++    ++ 
  MMETSP0890-20130614|588_1  2 AIEIGEKTLGPNH---PNL 17
               99*******8854...554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.005
               HHTC-HHHHHHHHHHHHHHHHHH...TSTTTTC CS
  PF07554.8 13 ysnadtekknaynnAitaAkaiLnntngpnatq 45
               y    +e+k +y+ Ai++ ++ L ++    +++
  MMETSP0890-20130614|588_1 34 Y----DEAKPLYERAIEIGEEALGPNH---PNV 59
               4....89999*************7765...765 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.17
               CCCHHHHTC-HHHHHHHHHHHHHH CS
  PF07554.8  8 kassnysnadtekknaynnAitaA 31
               ++  +y    +e+k +y+ Ai++ 
  MMETSP0890-20130614|588_1 71 ESQGKY----NEAKPLYERAIEIG 90
               555555....77888888887765 PP

>> PF08311.7  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.024        18      98     126 .]      17      45 ..      13      45 .. 0.88
   2 ?    7.8   0.0     0.003       2.3      98     126 .]      59      87 ..      56      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.024
                BHHHHHHHHHHHHHTT-HHHHHHHHH--- CS
  PF08311.7  98 lalfYeewaslleskgkfkkAeevlqlGi 126
                la    + a ll ++gk+ +A+ +++++i
  MMETSP0890-20130614|588_1  17 LATWLNNLAGLLRNQGKYDEAKPLYERAI 45 
                677778899****************9986 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.003
                BHHHHHHHHHHHHHTT-HHHHHHHHH--- CS
  PF08311.7  98 lalfYeewaslleskgkfkkAeevlqlGi 126
                +a +  + a lles+gk+++A+ +++++i
  MMETSP0890-20130614|588_1  59 VAPYLNNLAGLLESQGKYNEAKPLYERAI 87 
                67778899*****************9986 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0077       5.9      13      27 ..      30      42 ..      24      50 .. 0.84
   2 ?    3.5   0.0     0.075        57      14      26 ..      73      83 ..      71      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0077
               HTT-HHHHHHH..HH CS
  PF07720.7 13 nkkkyqeArelfsYa 27
               n++ky+eA  l  Y+
  MMETSP0890-20130614|588_1 30 NQGKYDEAKPL--YE 42
               8*******888..55 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.075
               TT-HHHHHHH..H CS
  PF07720.7 14 kkkyqeArelfsY 26
               ++ky+eA  l  Y
  MMETSP0890-20130614|588_1 73 QGKYNEAKPL--Y 83
               9******777..5 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.027        21      65      83 ..      13      31 ..       8      32 .. 0.89
   2 ?    6.0   0.0     0.019        15      47      82 ..      36      72 ..      27      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.027
  PF14357.1 65 eHPklagtlrnildsLanm 83
               +HP+la  l+n++  L n 
  MMETSP0890-20130614|588_1 13 NHPNLATWLNNLAGLLRNQ 31
               7************999885 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.019
  PF14357.1 47 edeslaerlne.averFeaeHPklagtlrnildsLan 82
               e ++l er  e   e    +HP++a  l+n++  L +
  MMETSP0890-20130614|588_1 36 EAKPLYERAIEiGEEALGPNHPNVAPYLNNLAGLLES 72
               55555555555345667779***********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 314.95
//
Query:       MMETSP0890-20130614|583_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    8.8   4.4        1.1    9.1   0.5    2.5  2  PF12961.2 Domain of Unknown Function with PDB structure (DUF3850)
        4.4    7.1   8.8        6.8    6.5   5.5    1.7  2  PF11827.3 Protein of unknown function (DUF3347)


Domain annotation for each model (and alignments):
>> PF12961.2  Domain of Unknown Function with PDB structure (DUF3850)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   0.00016       1.1      13      31 ..      12      30 ..       3      35 .. 0.83
   2 ?   -0.1   0.1      0.12     8e+02      10      25 ..      38      53 ..      34      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00016
  PF12961.2 13 vvegkKtfEiRkNDRnyqv 31
               ++e++K++EiRk D n qv
  MMETSP0890-20130614|583_1 12 LKEEIKKYEIRKRDQNDQV 30
               6899***********9886 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.12
  PF12961.2 10 feavvegkKtfEiRkN 25
               +e ++e+ K  E Rk 
  MMETSP0890-20130614|583_1 38 LEQILEQMKINERRKD 53
               6778888888888875 PP

>> PF11827.3  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.13   9.1e+02      81     113 ..      43      61 ..      10      69 .. 0.52
   2 ?    6.5   5.5   0.00099       6.8      28     121 ..      73     176 ..      34     187 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.13
  PF11827.3  81 eavdakklskeeakelkktaekakekdiekqRe 113
                e+++ +              e+ k+++i+k+Re
  MMETSP0890-20130614|583_1  43 EQMKIN--------------ERRKDESIKKKRE 61 
                222222..............2222224444444 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00099
  PF11827.3  28 kkkeeee..........ekvkekekedealkevlsaYlelkdaLvkddakkakaaakklaealeavdakklskeeakelkktaekakek.diekqReaFkkLSee 121
                 k+++e+          ++ +e   e   ++++++    +k+ L + da +a +aak  a+ l  +++ ++ ++ +++ +++a++  ++ ++   R+ +++L+++
  MMETSP0890-20130614|583_1  73 RKTSMESmpethkklkrSDARELPREATPVRSFFEGDPLIKNMLDEFDARAAVNAAK-RAQLLALIETAEAAANYRHQTAEAAANYRHAqSLTAIRQVYSSLNQA 176
                111111133344455446666667777888999999999*********777766655.56788888888888888888888887776657***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1749  (0.127926); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 845.26
//
Query:       MMETSP0890-20130614|594_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.018   14.5   0.1    1.4  1  PF11041.3  Protein of unknown function (DUF2612)
      0.066   12.2   0.0       0.15   11.0   0.0    1.6  1  PF02416.11 mttA/Hcf106 family


Domain annotation for each model (and alignments):
>> PF11041.3  Protein of unknown function (DUF2612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.6e-06     0.018      34      86 ..       7      58 ..       1      82 [. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.6e-06
  PF11041.3 34 ledlrdvfdidtaegvqLDvvGkivGvsrllsvkeskkyfgFgestaalgfdq 86
                + +  +fdi+ a    L+ vG+ +G s+    +++ ++fg  ++t++l fd+
  MMETSP0890-20130614|594_1  7 SKGMFANFDIEAARSLKLSEVGRNLGDSLGTAMAKNFSNFGA-NATKNLNFDN 58
               4448889**********************************9.6999999953 PP

>> PF02416.11  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.3e-05      0.15      21      34 ..      23      36 ..      21      43 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.3e-05
                STTT-------HHH CS
  PF02416.11 21 kLPEvaraLGktLr 34
                kL Ev+r+LG++L 
   MMETSP0890-20130614|594_1 23 KLSEVGRNLGDSLG 36
                9**********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 570.04
//
Query:       MMETSP0890-20130614|600_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 327.12
//
Query:       MMETSP0890-20130614|601_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.4e-190  632.8   0.0   8.4e-190  632.6   0.0    1.0  1  PF02514.11 CobN/Magnesium Chelatase


Domain annotation for each model (and alignments):
>> PF02514.11  CobN/Magnesium Chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  632.6   0.0  6.2e-194  8.4e-190     470    1097 ..       2     686 ..       1     687 [. 0.90

  Alignments for each domain:
  == domain 1    score: 632.6 bits;  conditional E-value: 6.2e-194
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02514.11  470 nnpgEGiqAKRRgnAviidHltPpltraglygelaeLeelideYeeaeeldesrkeelkeeIielaeelgldedl.elsskeee...........................efeefleelddyLeelkesqipdGLHvlGeapegeelvelvlailrddaeseveeeslaellaealgld.....arseaaalelleevaknltsps.eaeeeklneseeatk.................................tqeav.evaelleealelaerlasaseEieallkALdGkyippgpggdpirgpdvLPTGRNfysvDpraiPteaAwevGkklaeelleryleehgeyPekvalvlwgtetmrtkGediAqilallGvrpvwdesgrvtgvelipleeLgRPRIDVvvrisGlfRDafpnlvelideAvrlvaeldepeeeNyvrkhsleeekelleegleeeeaeelaklRvFgsapGtYgagvqelvesssweneseLaeaYlnrmsyaYgkk..ewgeearelleeaLskvdavvqsrdsneydlldsddyyeflGGlaaavrslsGedpelyigDlsdpdeprvrtleeelarelrsrllNPkWiegmmkhGykGaaeiaatvenlfgwdattdaVddwvyeevaetyvldeemreflaeeNpwAlqeiaerllEaarrglWdaddetl 1097
                  nnp+E+++AKRR++A +i++ltPp ++agly+ l+e +el+++Y+  + ++e r +++ ++I++   +++ld+d+ e+ +++e+                           + ++++  + + L+e+++++ p GLH++G +p+++e v+++++i++ d+ + +++ +l+++la+++++d     +++++ +le +e + k    +   +++ + +++++                                    +  +  +++ l e+ + + +++  a++E+ al +AL+Gkyi+pgpggdpir+p vLPTG+N++++Dp++iPt aA++ +k+++++ll+r ++++g++Pe+va++lwgt++++t Ge++Aq+l l+Gvrp  d+ grv++++lipleeLgRPR+DVvv++sG+fRD+f n+++l+d+A++l+ae+dep ++N+vrkh+l+       +++e ++  + a++RvF++a G+Y a+v  ++e++ we+e++L++ +++r+++a++++  +  ++++el+++aLs+vd+++q+ ds+e+++ d+++yy+          +  G++p+++++D+++ ++++vrtl+e ++ ++r++llNPk++egm+++Gy+Ga+ei+++++n++gw+at +aVd+ vye+  +t+++d+em+++l ++Np+A+++++  +lEa+ rg+Wd+d+e +
   MMETSP0890-20130614|601_1    2 NNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKEVQELVSSYQGLR-ENEGRGPSIVNSIVAASFTCNLDTDMaEFIKTDEKlhealgmknpfladetasfdakdvsldARDQIVGLVYRKLMEIESRLLPMGLHTVGVPPTADEAVATLVSIAEIDRPE-DDVIGLPRILANSMNRDleevyKNANNGVLEDVEFLQKITLATRaAVKALVDESTGA--DgrvmevipmakimanalgakpqyrvslsksgfsKGSTDpALTPLFEYLEFCLKQV-VADNELGALAEALNGKYIEPGPGGDPIRNPAVLPTGKNMHALDPQSIPTSAAVDCAKRVVDKLLARLEKDTGSMPESVAFTLWGTDNIKTYGESLAQVLELVGVRPLPDALGRVNKLQLIPLEELGRPRVDVVVTCSGVFRDLFVNQMNLLDRAIKLAAEADEPLDQNFVRKHALQ-------QAEEMGCTVRDAATRVFSNAAGSYSANVGLAIENGGWESENQLQDQFIQRKGFAFNSDkpGVIDQQTELFKAALSTVDVTFQNLDSSEISISDVSHYYDSDPTKVVQGLRKDGRSPAAMMADTTT-ANAQVRTLSETVRLDARTKLLNPKFYEGMLNSGYEGAREITKRLRNTMGWSATSGAVDNFVYEDANDTFIKDPEMQRRLLDTNPNAFRDMVTTFLEANGRGYWDTDPENI 686 
                  9**********************************************5.699**********************9833333333577999999*****************988999999****************************************555.789999999999999999999844444444444333332222220222222222222..24477788888888999999999****99999963333367999************.99*****************************************************************************************************************************************************************************9.......456788999***********************************************96477789***********************************76555555555559**********75.666*******************************************************************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.35s 00:00:01.41 Elapsed: 00:00:01.56
# Mc/sec: 1082.97
//
Query:       MMETSP0890-20130614|605_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   46.5   0.3    2.1e-09   36.8   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.9e-12   46.8   0.0    2.2e-12   46.6   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    1.9e-07   30.2   2.5      3e-06   26.4   0.5    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.9e-06   27.2   0.1    2.2e-06   27.0   0.1    1.1  1  PF13414.1  TPR repeat
      2e-06   27.0   0.3    0.00022   20.6   0.0    2.0  2  PF13176.1  Tetratricopeptide repeat
    2.9e-06   26.6   0.9    2.6e-05   23.6   0.1    2.0  2  PF07719.12 Tetratricopeptide repeat
    0.00088   18.7   0.3    0.00088   18.7   0.2    1.7  2  PF13181.1  Tetratricopeptide repeat
     0.0023   17.8   0.7       0.14   12.3   0.1    2.5  2  PF13431.1  Tetratricopeptide repeat
      0.003   18.0   0.1     0.0036   17.8   0.1    1.3  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   15.1   0.1      0.051   14.1   0.0    1.6  2  PF13428.1  Tetratricopeptide repeat
      0.068   13.5   0.0       0.13   12.6   0.0    1.5  1  PF13174.1  Tetratricopeptide repeat
      0.079   12.6   0.1      0.079   12.6   0.1    1.6  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.8e-12   2.1e-09      11      42 .]       3      34 ..       2      34 .. 0.96
   2 !    8.5   0.0    0.0015       1.7       5      18 ..      39      52 ..      35      53 .] 0.89

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.8e-12
  PF13374.1 11 alrargryeeAlaleeealairrrllGddHPd 42
               +l+++g+y+eA +l+e+a +i ++ +G++HP+
  MMETSP0890-20130614|605_1  3 LLQQQGKYDEAKPLYERAIEIDEKTYGPNHPQ 34
               699****************************5 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0015
  PF13374.1  5 lnnLAlalrargry 18
               l+nLA +l ++g+y
  MMETSP0890-20130614|605_1 39 LSNLAGLLKDQGKY 52
               89**********98 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.9e-15   2.2e-12      14      62 ..       3      52 ..       2      53 .] 0.96

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.9e-15
  PF13424.1 14 vlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdy 62
               +l+++g+ydeA  lye+a+e+  +++g++hp+ a+ l nla l+  +g+y
  MMETSP0890-20130614|605_1  3 LLQQQGKYDEAKPLYERAIEIdEKTYGPNHPQFATDLSNLAGLLKDQGKY 52
               689*********************************************99 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.5   2.7e-09     3e-06      11      32 ..       4      25 ..       3      26 .. 0.93
   2 ?    3.9   0.0     0.035        40       4      17 ..      39      52 ..      36      53 .] 0.91

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.7e-09
                HHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23 11 ylklgkydeAleyyekALelnP 32
                ++++gkydeA   ye+A+e+++
   MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPLYERAIEIDE 25
                789*****************97 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.035
                HHHHHHHHHHTT-H CS
  PF00515.23  4 lynlGnaylklgky 17
                l nl+ ++  +gky
   MMETSP0890-20130614|605_1 39 LSNLAGLLKDQGKY 52
                689**********9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.9e-09   2.2e-06      13      54 ..       4      52 ..       2      53 .] 0.83

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.9e-09
  PF13414.1 13 lfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdy 54
               l ++g+ydeA  +ye+A+e+d     pn+++    ++nlA ++  +gk y
  MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPLYERAIEIDektygPNHPQfatDLSNLAGLLKDQGK-Y 52
               679*****************9889998888866578888888888884.5 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.9e-07   0.00022       8      34 ..       3      29 ..       2      32 .. 0.84
   2 ?    4.9   0.0     0.021        24       2      15 ..      39      52 ..      39      53 .] 0.94

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.9e-07
  PF13176.1  8 lysrlgdyekAielyeraLaltkdpld 34
               l +++g+y++A  lyera+++++  ++
  MMETSP0890-20130614|605_1  3 LLQQQGKYDEAKPLYERAIEIDEKTYG 29
               5799*************8888877665 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.021
  PF13176.1  2 llnLarlysrlgdy 15
               l+nLa l  ++g+y
  MMETSP0890-20130614|605_1 39 LSNLAGLLKDQGKY 52
               79**********99 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   2.3e-08   2.6e-05      11      32 ..       4      25 ..       3      27 .. 0.92
   2 ?    2.0   0.0      0.19   2.2e+02       4      17 ..      39      52 ..      36      53 .] 0.86

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2.3e-08
                HHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12 11 yyklgdyeeAleafekAleldP 32
                + ++g+y+eA+ ++e+A+e+d 
   MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPLYERAIEIDE 25
                789*****************97 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.19
                HHHHHHHHHHTT-H CS
  PF07719.12  4 lynlGlayyklgdy 17
                l nl+ ++  +g+y
   MMETSP0890-20130614|605_1 39 LSNLAGLLKDQGKY 52
                789999******99 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   7.7e-07   0.00088      11      32 ..       4      25 ..       3      28 .. 0.88
   2 ?   -0.8   0.1       1.3   1.5e+03       6      17 ..      41      52 ..      39      53 .] 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.7e-07
               HHHTT-HHHHHHHHH---HHHH CS
  PF13181.1 11 YrqlGdydkAkeylekalelkp 32
               + q G+yd+Ak  +e+a+e++ 
  MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPLYERAIEIDE 25
               679*****************97 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.3
               T---HHHHTT-H CS
  PF13181.1  6 nlGdiYrqlGdy 17
               nl+ ++++ G+y
  MMETSP0890-20130614|605_1 41 NLAGLLKDQGKY 52
               677788999988 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.073        83      22      33 ..       3      14 ..       3      15 .. 0.88
   2 !   12.3   0.1   0.00012      0.14       1      29 [.      16      52 ..      16      53 .] 0.80

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.073
  PF13431.1 22 lllnnGdleeAe 33
               ll+ +G+++eA+
  MMETSP0890-20130614|605_1  3 LLQQQGKYDEAK 14
               5899******97 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00012
  PF13431.1  1 lyekaleld.....Pnnadayn...nLAelllnnGdl 29
               lye+a+e+d     Pn++++ +   nLA ll+++G++
  MMETSP0890-20130614|605_1 16 LYERAIEIDektygPNHPQFATdlsNLAGLLKDQGKY 52
               7*******99999999999999555666666677766 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   3.2e-06    0.0036       7      36 ..       4      41 ..       2      53 .] 0.72

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.2e-06
  PF13432.1  7 llraGdydeAlaaleaalala........Peaaealll 36
               l ++G+ydeA +++e+a++ +        P+ a  l +
  MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPLYERAIEIDektygpnhPQFATDLSN 41
               789**************999999999444444444444 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.5e-05     0.051      11      33 ..       4      26 ..       2      45 .. 0.79
   2 ?   -1.1   0.0       3.3   3.7e+03       5      16 ..      40      51 ..      35      52 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.5e-05
  PF13428.1 11 llalGdpdeAiallrralalaPd 33
               l ++G +deA  l++ra++ + +
  MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPLYERAIEIDEK 26
               6789**************96643 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 3.3
  PF13428.1  5 lalarallalGd 16
                 la +l ++G 
  MMETSP0890-20130614|605_1 40 SNLAGLLKDQGK 51
               567888888775 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012      0.13       8      28 ..       3      22 ..       1      24 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00012
               HHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  8 lsyyklgdtdeAlealerlik 28
               l+++ +g++deA+ ++er i+
  MMETSP0890-20130614|605_1  3 LLQQ-QGKYDEAKPLYERAIE 22
               4444.66***********997 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     7e-05     0.079      11      34 ..       4      25 ..       3      27 .. 0.81
   2 ?   -2.7   0.1       4.3   4.9e+03      14      17 ..      49      52 ..      46      53 .] 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7e-05
               HHHTT-HHHHHHH..HHHHHHH-T CS
  PF07720.7 11 fynkkkyqeArelfsYallaildk 34
               +++++ky+eA  l  Y+ +  +d+
  MMETSP0890-20130614|605_1  4 LQQQGKYDEAKPL--YERAIEIDE 25
               79********999..777766665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.3
               TT-H CS
  PF07720.7 14 kkky 17
               ++ky
  MMETSP0890-20130614|605_1 49 QGKY 52
               8998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 184.07
//
Query:       MMETSP0890-20130614|606_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 1602.14
//
Query:       MMETSP0890-20130614|610_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-12   46.1   0.2    3.3e-10   39.3   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat
     0.0044   16.4   0.1        1.5    8.3   0.0    2.0  2  PF08972.6  Domain of unknown function (DUF1902)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0023        16      32      39 .]       2       9 ..       1       9 [. 0.91
   2 !   39.3   0.0   4.8e-14   3.3e-10       2      39 .]      14      51 ..      13      51 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0023
                TSEEEEEE CS
  PF00400.27 32 DgtirlWd 39
                Dgt r+W+
   MMETSP0890-20130614|610_1  2 DGTARVWN 9 
                *******7 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 4.8e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++ +l+gHts V  +afsp+g++++++ +Dg+ r+++
   MMETSP0890-20130614|610_1 14 TLLLILEGHTSLVLGCAFSPNGRRIITAAWDGKARVFS 51
                67899*******************************86 PP

>> PF08972.6  Domain of unknown function (DUF1902)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00066       4.5       8      30 ..       2      23 ..       1      28 [. 0.88
   2 !    8.3   0.0   0.00022       1.5       2      18 ..      38      54 ..      37      58 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00066
               ------EEEE-SS------EESS CS
  PF08972.6  8 DeEAgVWvAesddipGLvtEAdT 30
               D  A VW Ae   +  L++E  T
  MMETSP0890-20130614|610_1  2 DGTARVWNAENGTLL-LILEGHT 23
               889*********999.*999988 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00022
               EEEEEE------EEEE- CS
  PF08972.6  2 kiqavwDeEAgVWvAes 18
               +i a wD  A V +Ae 
  MMETSP0890-20130614|610_1 38 IITAAWDGKARVFSAET 54
               599***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 248.19
//
Query:       MMETSP0890-20130614|607_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-05   22.4   0.6    0.00013   21.6   0.4    1.5  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.4   9.5e-09   0.00013       5      31 .]      42      67 ..      37      67 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 9.5e-09
                EEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21  5 WeersddddGrvYYyNheTgetqWekP 31
                W++ ++  +Gr++Y++  Tg+ qW  P
   MMETSP0890-20130614|607_1 42 WKKLDPA-TGRWFYVHEVTGQIQWAVP 67
                6665645.5***************666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.92
# Mc/sec: 666.81
//
Query:       MMETSP0890-20130614|615_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       871  (0.0637068); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.91
# Mc/sec: 966.44
//
Query:       MMETSP0890-20130614|608_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:01.04
# Mc/sec: 1361.78
//
Query:       MMETSP0890-20130614|616_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-09   37.7   0.0    3.1e-09   36.7   0.0    1.5  1  PF00307.26 Calponin homology (CH) domain
     0.0014   18.2   0.0     0.0032   17.0   0.0    1.5  1  PF04904.8  NAB conserved region 1 (NCD1)
     0.0027   17.9   0.0      0.008   16.4   0.0    1.8  1  PF08368.7  FAST kinase-like protein, subdomain 2
  ------ inclusion threshold ------
      0.012   15.6   0.3      0.058   13.5   0.0    2.3  2  PF00536.25 SAM domain (Sterile alpha motif)
      0.035   13.6   0.0      0.099   12.1   0.0    1.8  1  PF11971.3  CAMSAP CH domain


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.1e-12   3.1e-09       4     105 ..     224     328 ..     223     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.1e-12
                 HHHHHHHHHTTSTCTSSHS.......HHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHTST-HHHHHHHHHHHH CS
  PF00307.26   4 llrWinkvlekleqsrqve.......nlskdlsDGvaLaallhkycpdlvdlediskclke.svadsleNlqlalefaeeklgvscvl..tledllysgnkknvlaflaeLf 105
                 +l+W+ +vl+ +   +++         + ++l+DGv+L+ ll+ ++p++  ++++  ++ +  +++++ N++ ++  ++  lgv++    ++ dl  + + ++v ++l +L 
   MMETSP0890-20130614|616_1 224 ALKWVYNVLKLEP--LPIDiesrpedCFGEQLCDGVLLCSLLNVIKPGT--VRKV--TKRTtIPFHMMANITSFVRGCQA-LGVKKRDcfDTLDLQTHRDLSKVYETLLMLN 328
                 589******8773..4444446666478********************6..5888..4334589***************9.***9988888888877899999888888876 PP

>> PF04904.8  NAB conserved region 1 (NCD1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0032      22      72 ..     489     537 ..     478     543 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.2e-06
  PF04904.8  22 lsyydvfieqGGddvqqlceaeeeefleimalvGmaskPlhvrrlqkalqe 72 
                l+ y   i+   dd++ l e +ee+f + ++   m   Pl  rrl+kal +
  MMETSP0890-20130614|616_1 489 LEKYAAKIADIADDINDLKEMTEEDFQDFVNETKM--PPLKARRLKKALID 537
                66788889999********************9988..59*********987 PP

>> PF08368.7  FAST kinase-like protein, subdomain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.9e-06     0.008       5      46 ..     323     361 ..     319     371 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.9e-06
  PF08368.7   5 kLleLnaavkLecpeykgplLperyqeksflvpllskkekrp 46 
                 Ll+Ln+av+  cpeykgp L +   +k++  +++++k+k+ 
  MMETSP0890-20130614|616_1 323 TLLMLNRAVQKTCPEYKGPFLFS---AKQIERMQARSKRKSG 361
                79******************997...3344555555555544 PP

>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.3   6.2e+03      28      42 ..      12      26 ..       9      29 .. 0.51
   2 ?   13.5   0.0   2.1e-05     0.058       7      46 ..     479     519 ..     474     527 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.3
                --SHHHHTT--HHHH CS
  PF00536.25 28 eidgdallllteedL 42
                e+d + l +l+e  L
   MMETSP0890-20130614|616_1 12 EMDEKDLVRLSETRL 26
                444455555555555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.1e-05
                 SHHHHHHHTT-GGGHHHHHCT--SHHHHTT--HHHHHH.H- CS
  PF00536.25   7 dVgeWLesiglgqYvdnFrageidgdallllteedLek.lg 46 
                 ++++  ++ gl++Y+ + ++  +d+  l+++teed+++ ++
   MMETSP0890-20130614|616_1 479 TIDQLVKQVGLEKYAAKIADIADDINDLKEMTEEDFQDfVN 519
                 789999******************************98665 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-05     0.099      16      67 ..     249     297 ..     241     312 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.6e-05
  PF11971.3  16 ltrdlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefcee 67 
                + + l+DGv+L+ l++   P  v+   ++ k+t+  ++++ N+  +   c+ 
  MMETSP0890-20130614|616_1 249 FGEQLCDGVLLCSLLNVIKPGTVRK--VT-KRTTIPFHMMANITSFVRGCQA 297
                67889*****************966..77.6666678888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.41s 00:00:01.34 Elapsed: 00:00:00.73
# Mc/sec: 1818.61
//
Query:       MMETSP0890-20130614|620_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-27   94.2   6.5      6e-27   94.2   4.5    2.7  2  PF12999.2 Glucosidase II beta subunit-like
    1.2e-20   73.4   0.4    4.3e-20   71.6   0.2    2.0  1  PF13015.1 Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
      0.032   14.9   0.1      0.032   14.9   0.1    2.6  3  PF07915.8 Glucosidase II beta subunit-like protein
       0.24   11.1   2.7          1    9.1   0.0    2.8  3  PF08769.6 Sporulation initiation factor Spo0A C terminal
       0.43    9.5   8.9        1.2    8.1   0.7    2.2  2  PF04890.8 Family of unknown function (DUF648)
          4    6.6  12.7       0.98    8.6   4.0    2.2  2  PF07587.6 Protein of unknown function (DUF1553)


Domain annotation for each model (and alignments):
>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   4.5   2.6e-30     6e-27      46     167 ..       6     126 ..       1     135 [. 0.91
   2 ?    4.1   1.5     0.012        28     124     167 ..     529     572 ..     494     579 .. 0.82

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 2.6e-30
  PF12999.2  46 iklsfdqvnddycdcPdGsdePGtsaceng....kfycaneGyisgyiesfkvddgvcdydiccdGsde.elgkcenkcaeiarkfeelleeankkvkkglkikeelllaakkkldelkkklkeled 167
                i +  +++nd ycdc  G+dePGtsac+       f+c n+ ++ ++++s +vddg+cd   ccdGsde ++++c++ ca   +k+e+ +  ++ +  kg  i+  ++ aa++ ++e k+++ + +d
  MMETSP0890-20130614|620_1   6 I-VGIEKLNDGYCDC--GADEPGTSACSSVrhvvGFWCENRAFEKAWLPSSRVDDGICD---CCDGSDEgKIVQCPDICAAERKKAEAKRLLMKTQRLKGAAIRSAMVCAAQRGEEEFKERQMKARD 126
                5.67899********..9*********87755567************************...*******999*****************99999999999*******************99888766 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.012
  PF12999.2 124 rkfeelleeankkvkkglkikeelllaakkkldelkkklkeled 167
                +++++  +++n+++kk l+  ++   + kkk++ l+kk kel d
  MMETSP0890-20130614|620_1 529 ERVRNRARQRNEQIKKELRKEDKRHGKKKKKKRSLIKKIKELFD 572
                45677778899999999999999999999999999999998866 PP

>> PF13015.1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.2   1.9e-23   4.3e-20       4     128 ..     352     483 ..     348     505 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1.9e-23
  PF13015.1   4 eldeaeedikkieseltklkeeleseyGldDiyRalegrevkekigdYeYkvvllesvvqddisiGefkkq...egnk...lkyekGakCWnGPvRsaiveveCGde.nelvsvseaekCeYllkvkspaaC 128
                +  ++e++++k  + l++  +  +s+yG d     +   +v++k  +Y+Y+++l+++  qdd s+G+f+++   e+n+   + +++G+ C nGP Rs  v ++CG +  e+v   e+e C Yl  + +p aC
  MMETSP0890-20130614|620_1 352 SKKKLEKEVNKRREALAQHGAVDKSRYGDDGAGWLVRDACVNKKFQNYKYEICLFGKAKQDDTSLGTFSRAvmdEKNRiigIEFDQGTYCPNGPARSLKVSLQCGMKgTEIVNLQEPETCRYLADIATPLAC 483
                4555566666666666666667788999999999999*******************************876333566622257**********************76379********************** PP

>> PF07915.8  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.8   1.1e+04      27      31 ..     225     229 ..     195     267 .. 0.59
   2 ?   14.9   0.1   1.4e-05     0.032       2      41 ..     390     419 ..     389     442 .. 0.75
   3 ?   -2.2   0.1         3   6.9e+03      47      55 ..     537     545 ..     503     565 .. 0.52

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4.8
  PF07915.8  27 pekke 31 
                 + +e
  MMETSP0890-20130614|620_1 225 SSTDE 229
                22222 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.4e-05
  PF07915.8   2 kClsskegwwtYefCygkkvrQfhepekkegkseyvLGrf 41 
                 C+++k ++++Ye+C ++k +Q            ++LG+f
  MMETSP0890-20130614|620_1 390 ACVNKKFQNYKYEICLFGKAKQD----------DTSLGTF 419
                6*********************9..........5566666 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 3
  PF07915.8  47 sewaekkvs 55 
                ++ ++ k++
  MMETSP0890-20130614|620_1 537 QRNEQIKKE 545
                222222222 PP

>> PF08769.6  Sporulation initiation factor Spo0A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.16   3.6e+02      59      81 ..     100     122 ..      87     146 .. 0.83
   2 ?    9.1   0.0   0.00045         1      33     101 ..     169     235 ..     160     240 .. 0.85
   3 ?   -2.4   0.2       1.6   3.8e+03      70     100 ..     515     545 ..     493     551 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.16
  PF08769.6  59 raIRhaievaltkgevdlvekll 81 
                 aIR a+  a ++ge +  e+ +
  MMETSP0890-20130614|620_1 100 AAIRSAMVCAAQRGEEEFKERQM 122
                48*************99877765 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00045
  PF08769.6  33 elldgvtkelYpeiAkkyettpsrvEraIRhaievaltkgevdlvekllgltveeekekptnsefiall 101
                +l++++ ++l +++A +++t p+r+   + ++i  + t   +d ++   +l++++++e  t++++++++
  MMETSP0890-20130614|620_1 169 NLPSSKLRQLVINLATEHKTDPERLKAMVQEVIGNTST--VQDKMQIEEDLSHSADQESSTDEQVEDVV 235
                67889999*************************99666..67777777888999999999999988776 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.6
  PF08769.6  70 tkgevdlvekllgltveeekekptnsefial 100
                t  +++ v++ ++++  +++ +  n+++ + 
  MMETSP0890-20130614|620_1 515 TTTKTNKVSSSASIERVRNRARQRNEQIKKE 545
                3356666777777777777777777777655 PP

>> PF04890.8  Family of unknown function (DUF648)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.7   0.00052       1.2     113     255 ..      85     225 ..      64     265 .. 0.82
   2 ?    5.6   1.1     0.003       6.9     189     253 ..     505     569 ..     483     580 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00052
  PF04890.8 113 ak..rldiektsqkvasilvlsvlvdvseeklqelkknpeavekavrtskkeFsevkkkdylrdilthvigyllsleeelkdlvldesdlsqstlnleseldltlkadkrsiekklrellneesKksklkevlkklllkgikqev 255
                a+  rl  +++++k a i   +v     ++  +e+k++  + + +  + +++F  ++++    +++++  +  + +   +k+  ld+  +s++ ++l   l    k d++ ++  ++e+++ +s   ++k +++++l++++ qe 
  MMETSP0890-20130614|620_1  85 AEakRLLMKTQRLKGAAIRSAMVC--AAQRGEEEFKERQMKARDGFDELEEKFTIASTEAESFRLRADKSRNKIAQARLYKAFGLDNL-PSSKLRQLVINLATEHKTDPERLKAMVQEVIGNTS-TVQDKMQIEEDLSHSADQES 225
                442366667777777777777777..9999999******************************************************5.9*******************99999********99.99***************932 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.003
  PF04890.8 189 elkdlvldesdlsqstlnleseldltlkadkrsiekklrellneesKksklkevlkklllkgikq 253
                +l + v++++    ++++  s + +++++ +r  ++++++ l +e K+  +k++ k  l+k+ik+
  MMETSP0890-20130614|620_1 505 TLLAEVMNSTTTTKTNKVSSSASIERVRNRARQRNEQIKKELRKEDKRHGKKKKKKRSLIKKIKE 569
                45566778888888888888888888889999888*******************9*******998 PP

>> PF07587.6  Protein of unknown function (DUF1553)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.0   0.00043      0.98     105     258 ..      92     249 ..      79     255 .. 0.75
   2 ?    1.9   0.4     0.047   1.1e+02      98     168 ..     494     567 ..     485     578 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00043
  PF07587.6 105 apprRLeaEvirDavlaasglldlevggpsvkpeqsrdemeqktaa...akanggeerkrrslyvtqkrnnrnpfLqvFdaperessc.drrrstntplQalvLlNdelvleaarqlasrllkeesddqeeegtsveqvvedaflrvlsReptaeEre 258
                ++ +RL+  +ir a++ a+++ ++e++++++k +   de+e+k +      ++++ ++++++    q r  + + L ++  ++ ++ + +   + +t + +l  + +e++ ++++ + +  ++e  ++++++++s +++ved+ +  l  ep++ E+e
  MMETSP0890-20130614|620_1  92 MKTQRLKGAAIRSAMVCAAQRGEEEFKERQMKARDGFDELEEKFTIastEAESFRLRADKSRNKIAQARLYKAFGLDNLPSSKLRQLViNLATEHKTDPERLKAMVQEVIGNTSTVQDKMQIEEDLSHSADQESSTDEQVEDVVVGDLDSEPSSIELE 249
                5789****************9999*****999999988888773334532333333344444444555555667777777777555440445555666999999999999999998888888888888899999***********9999999999987 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.047
  PF07587.6  98 dnrllarapprRLeaEvirDavlaasglldlevggpsvkpeqs.rdemeqktaa..akanggeerkrrslyvtq 168
                +n    +++   L aEv+     + +++++ +++ + v+ +++ r+e  +k+ +   k++g++++k+rsl +  
  MMETSP0890-20130614|620_1 494 SNFECTEQNFDTLLAEVMNSTTTTKTNKVSSSASIERVRNRARqRNEQIKKELRkeDKRHGKKKKKKRSLIKKI 567
                44445566777888888888888888888887777777777664333333333344555555666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1594  (0.116589); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.75
# Mc/sec: 1875.55
//
Query:       MMETSP0890-20130614|627_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-12   45.9   1.0    1.1e-11   44.8   0.7    1.6  1  PF01399.22 PCI domain
     0.0061   15.8   0.7     0.0061   15.8   0.5    2.1  2  PF03047.9  COMC family
  ------ inclusion threshold ------
        3.4    7.2   9.5        8.9    5.8   6.6    1.7  1  PF07697.6  7TM-HD extracellular


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.7   2.4e-15   1.1e-11       2     104 ..      74     170 ..      73     171 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 2.4e-15
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-H.HHHHHHHHHHHH-------B-S----EE-- CS
  PF01399.22   2 sysdllkalrsgnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIadgelrakidqpsgivvfk 104
                 +y  ll+++++g++s+++++ k+        ++  +l e   kk+r+ ++ + ++  ++i++e la++l+ ++  e+E +++++I++g++ +k+dq+++i++++
   MMETSP0890-20130614|627_1  74 NYVKLLEIFCYGKYSDYQQTKKEI-------QDFPELNEAQLKKLRLLSIVSACRERRQITYENLAQELETNTtRELEDYIIEAIYSGLVFGKMDQKQRIFYIS 170
                 6789********************.......6777788999***********************************************************9987 PP

>> PF03047.9  COMC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.46   2.1e+03       6      12 ..      22      28 ..      21      30 .. 0.77
   2 !   15.8   0.5   1.3e-06    0.0061       4      21 ..      93     110 ..      86     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.46
  PF03047.9  6 keLeqFk 12
               + LeqF+
  MMETSP0890-20130614|627_1 22 QQLEQFT 28
               679***7 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.3e-06
  PF03047.9   4 vkkeLeqFkeLtekeLqe 21 
                +kke+++F+eL+e +L++
  MMETSP0890-20130614|627_1  93 TKKEIQDFPELNEAQLKK 110
                69**************97 PP

>> PF07697.6  7TM-HD extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.6     0.002       8.9      77     144 ..     130     230 ..      63     239 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.002
  PF07697.6  77 slklsseetqllrqlsdeewqt.................................llnlddeelqdlestirealdrilsqgipeelldealeeaikeql.e 144
                +l+++  et++ r+l+d  +++                                  l + +++++++ ++i +al ++ +q i +++l++ ++++ + ++ +
  MMETSP0890-20130614|627_1 130 NLAQE-LETNTTRELEDYIIEAiysglvfgkmdqkqrifyisrtasrdlplqdipRLAARLQQWAETAKVIAQALAKQRQQSIESRALQTDRTNTLNAAVeD 230
                22111.2222455555555555777777777777777777777777777777777799***********************************998877633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       818  (0.0598303); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 863.95
//
Query:       MMETSP0890-20130614|629_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-14   50.8   3.3    7.7e-06   25.3   0.1    3.1  3  PF13516.1 Leucine Rich repeat
    3.5e-05   23.1   2.4    0.00027   20.3   1.4    2.0  2  PF12799.2 Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.069   13.2   0.1        1.9    8.9   0.0    2.3  2  PF13504.1 Leucine rich repeat
       0.14   11.7   2.8        3.2    7.4   2.2    2.1  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   6.6e-05      0.23      10      23 ..      15      28 ..       8      32 .. 0.90
   2 !   13.7   0.1   1.3e-05     0.045       1      23 [.      34      56 ..      34      57 .. 0.92
   3 !   25.3   0.1   2.3e-09   7.7e-06       1      23 [.      62      84 ..      62      85 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.6e-05
  PF13516.1 10 snNqigdeGlsaLa 23
               s N+igdeG+ a++
  MMETSP0890-20130614|629_1 15 SENKIGDEGANAIG 28
               78********9986 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.3e-05
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L+ L L +N+ig eG+ a++
  MMETSP0890-20130614|629_1 34 NTSLQLLFLDSNDIGAEGAIAIG 56
               689999*************9997 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 2.3e-09
  PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
               +++L++L Ls+N+igdeG+ a++
  MMETSP0890-20130614|629_1 62 NTSLKTLGLSSNNIGDEGAIAIG 84
               789****************9997 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0012       4.1      10      36 ..      16      47 ..      15      54 .. 0.75
   2 !   20.3   1.4   7.9e-08   0.00027       1      38 [.      35      77 ..      35      82 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0012
  PF12799.2 10 nNnIkd.....lppelanLpnLktLnLsnNpi 36
               +N+I d     ++  la  ++L++L L++N i
  MMETSP0890-20130614|629_1 16 ENKIGDeganaIGRALATNTSLQLLFLDSNDI 47
               5666554544466669999***********88 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 7.9e-08
  PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
               t+L+ L L +N I       ++  l++ ++LktL Ls+N+i d
  MMETSP0890-20130614|629_1 35 TSLQLLFLDSNDIGAegaiaIGRGLGSNTSLKTLGLSSNNIGD 77
               789**********75466669988*****************87 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11   3.8e+02       1      13 [.      35      47 ..      35      51 .. 0.85
   2 ?    8.9   0.0   0.00057       1.9       1      14 [.      63      76 ..      63      79 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.11
  PF13504.1  1 pnLkeLdLsgnrL 13
               ++L+ L L +n++
  MMETSP0890-20130614|629_1 35 TSLQLLFLDSNDI 47
               6899999999987 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00057
  PF13504.1  1 pnLkeLdLsgnrLt 14
               ++Lk+L Ls+n++ 
  MMETSP0890-20130614|629_1 63 TSLKTLGLSSNNIG 76
               69*********985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2    0.0042        14      44      61 .]      30      47 ..      16      47 .. 0.79
   2 ?    7.4   2.2   0.00094       3.2      20      61 .]      30      75 ..      25      75 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0042
  PF13855.1 44 afkgLpsLreLnLsgNrl 61
               a++  +sL+ L+L++N++
  MMETSP0890-20130614|629_1 30 ALATNTSLQLLFLDSNDI 47
               455667889999988886 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00094
  PF13855.1 20 aFkglsnLkvLdLsgnnlk.....sispeafkgLpsLreLnLsgNrl 61
               a+   ++L+ L L +n +       i  + + + +sL+ L Ls+N++
  MMETSP0890-20130614|629_1 30 ALATNTSLQLLFLDSNDIGaegaiAIG-RGLGSNTSLKTLGLSSNNI 75
               566677888888887777323321222.3467777888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       113  (0.00826507); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 341.78
//
Query:       MMETSP0890-20130614|633_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-20   72.6   1.7      2e-20   72.4   1.1    1.1  1  PF00011.16 Hsp20/alpha crystallin family
  ------ inclusion threshold ------
      0.011   14.5   0.6      0.011   14.4   0.4    1.1  1  PF04514.7  Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF00011.16  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   1.1   2.9e-24     2e-20       2     101 ..      45     147 ..      44     148 .] 0.89

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 2.9e-24
  PF00011.16   2 ikeekdkfevkldvpglkkeelkvk.vednkvlvkgehe....eeeeddkglrserssrkFkrkfkLPenvdkdkvkaslkdGvLtvtvpkkkpekkkkerkiqi 101
                   e++++f++k+d+pg++k++++++ ++dn++l+k+e+     e++e+ +++  ers+++ +r++kLPe +d ++ +a++++GvL++ v k++ ++  + ++i+i
   MMETSP0890-20130614|633_1  45 LTETDKEFKIKADLPGVEKKNVTIDaLRDNTLLIKAERGevkeEKDEKMHYHKIERSYGSVQRSVKLPETADLSATTAKMDNGVLEIAVAKRTVPD--ETKRIKI 147
                 67999*******************7468999******99896566667788899*************************************99884..6777777 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.7e-06     0.011     134     201 ..      48     116 ..      36     148 .] 0.65

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-06
  PF04514.7 134 ndldRrelpeLPGvtksdvdvrelRqk...ireeRekekekl.erklaikeerlmespdsdedeakldeeak 201
                 d + ++  +LPGv+k +v +  lR     i+ eR + ke++ e+    k er ++s    ++ +kl e+a+
  MMETSP0890-20130614|633_1  48 TDKEFKIKADLPGVEKKNVTIDALRDNtllIKAERGEVKEEKdEKMHYHKIERSYGSV---QRSVKLPETAD 116
                556667889***********99999654449999976666550555567889999654...44555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 644.84
//
Query:       MMETSP0890-20130614|630_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-38  130.5   0.0    1.3e-36  125.2   0.0    2.3  1  PF00071.17 Ras family
      7e-17   61.3   0.3    2.7e-11   43.3   0.0    2.9  3  PF00651.26 BTB/POZ domain
    1.6e-14   54.3   0.0    3.8e-14   53.0   0.0    1.7  1  PF08477.8  Miro-like protein
    7.4e-05   21.9   0.0    0.00054   19.1   0.0    2.2  1  PF00025.16 ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   3.9e-40   1.3e-36       1     160 [.      12     188 ..      12     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 125.2 bits;  conditional E-value: 3.9e-40
                 EEEEE-------HHHHHHHHHSSS-SS-................TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTT...EEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeey................esTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDleekravsteegeelakelg...lkfletSAktnenveeafeellrei 160
                 K+v+vGd++vGK++ll++++++ F+ +y                 +T+ +d+y ++++vdg+ ++l++wDTAGqe++++lr+l+y +++++l +++ +s +sfen++ kw++e+ ++a+e vpi+Lv  K Dle+   vs +e ++l ++++     + ++SA t++++++++++++r +
   MMETSP0890-20130614|630_1  12 KVVVVGDGGVGKSCLLISYTTNAFPADYgtvylhdnllnychlaVPTV-FDNYGANVMVDGNPINLSLWDTAGQEDYDRLRPLSYPQTDVFLACFSKSSLHSFENISsKWLKELGQHAPE-VPILLVQCKNDLET-SLVSDDEINKLVSSWSpsvRGYRKCSALTQQGIKQTMDDAIRIV 188
                 9************************99833333333333333333566.77*******************************************************99***********6.*************6.9***********999866456*****************999876 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.5e-06     0.019       9      55 ..     258     304 ..     252     322 .. 0.83
   2 ?   -2.0   0.0      0.92   3.1e+03      80     105 ..     380     405 ..     335     410 .. 0.46
   3 !   43.3   0.0   7.8e-15   2.7e-11      13     108 ..     449     547 ..     447     549 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.5e-06
                 -S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTTTTTT-SEEEEE CS
  PF00651.26   9 elcDvtlvvgdgkefkahkavLaarSpyFkalftggeieestvseie 55 
                    D+ ++ +dg ++ +h   L++ Sp+F al+ ++++++++v+ + 
   MMETSP0890-20130614|630_1 258 LVPDISFEYEDGTTICTHCIALCCGSPFFCALLLDDKKKDKEVRLLA 304
                 5689********************************77777766444 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.92
                 ECCHHHHHHHHHHHHT-HHHHCHHHH CS
  PF00651.26  80 seenveelLaaadllqiprlkdacee 105
                 + + +++l ++a+ l + +l  ac++
   MMETSP0890-20130614|630_1 380 DLDSLDALEKVASTLGCVELLIACQN 405
                 33344444455555555555555555 PP

  == domain 3    score: 43.3 bits;  conditional E-value: 7.8e-15
                 EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTT.TTTT-SEEEEEETTS-HHHHHHHHHHHCCSEEEC....ECCHHHHHHHHHHHHT-HHHHCHHHHHHH CS
  PF00651.26  13 vtlvvgdgkefkahkavLaarSpyFkalftgg.eieestvseieledvepevfealLefiYtgeleit...seenveelLaaadllqiprlkdaceeflk 108
                 v l+v+d   ++ah  +LaarS++++a +  g  +++ + +e+  ++ +p++++a+++++Yt +++     + e + +++aaad++++ rl   +e f++
   MMETSP0890-20130614|630_1 449 VSLRVDD-FAVQAHSSILAARSSVLRAALFWGtLDKAIHRRELDFSELTPQALQAVVDYAYTRSTPQLeldNGEHATAIIAAADRFDMRRLSSLAEIFVC 547
                 6789995.99****************876666566888889**********************99988888889999**************999998876 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.1e-17   3.8e-14       1     119 []      12     141 ..      12     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1.1e-17
  PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp..............kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                kvvvvGd gvGKs ll ++++  fp                 l  ++  d+++   + vd++   l+lwd++g+e+ ++  +l   ++d++l  ++ ++  s+e++s+   wl+el + + ++p+ lv++k D
  MMETSP0890-20130614|630_1  12 KVVVVGDGGVGKSCLLISYTTNAFPadygtvylhdnllnYCHLAVPTVFDNYG-ANVMVDGNPINLSLWDTAGQEDYDRLRPLSYPQTDVFLACFSKSSLHSFENISSK--WLKELGQHAPEVPILLVQCKND 141
                8**************************99999999998845555555555555.35689999999**************77777*********************9888..********************88 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.6e-07   0.00054      12     169 ..       8     182 ..       1     188 [. 0.72

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.6e-07
                 TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEEEEEE....................TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHH.HHHHHTSGGGTTSEEEEEEE-TTSTT--.-HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHH CS
  PF00025.16  12 kkelrilllGLDnaGKtTilkklkleelvttvPTigfnveelei....................knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakee.LkalleeeelkevallvlaNKqDlpeal.seeelrellgleelkgkrkleiqkcsavkgeglkegle 169
                  ++++++++G  + GK+ +l  ++++ +     T+    + l++                    + +++++wD  Gqe   +l    +++td+ + +   +  + +e+ +++ Lk+l ++    ev++l++  K Dl+++l s++e+++l++  + +        kcsa++++g+k++++
   MMETSP0890-20130614|630_1   8 MQNIKVVVVGDGGVGKSCLLISYTTNAFPADYGTVYLHDNLLNYchlavptvfdnyganvmvdgNPINLSLWDTAGQEDYDRLRPLSYPQTDVFLACFSKSSLHSFENISSKwLKELGQH--APEVPILLVQCKNDLETSLvSDDEINKLVSSWSPS---VRGYRKCSALTQQGIKQTMD 182
                 577888888888888888888888887777444444444444444444444444444444456588*************9999999***********99999999987665527777554..579************99862666777766655433...334579*********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:01.12
# Mc/sec: 1422.84
//
Query:       MMETSP0890-20130614|635_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-18   66.5   0.1    2.4e-18   65.5   0.1    1.5  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   1.8e-22   2.4e-18       2      75 ..       4      82 ..       3      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.8e-22
                BEHHHHHTCECTTEEEEECTT......EEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHHHHHHHHHHGCGBE--B CS
  PF00173.23  2 ftleevskhnkekdswvvirg......kVYDvskflkdhpggasailafaGkDaTeafenashseaaekllekyyrvGrl 75
                 tleev+kh++ekd++++i +       VYDv+k+l+dhpgga+++l+ aGk a++ fe+  hs++a+k l++ ++vG l
   MMETSP0890-20130614|635_1  4 LTLEEVKKHDNEKDCYLIIGNpnnggpMVYDVTKYLDDHPGGAEVMLEMAGKYADDMFEDIGHSNEARKQLKD-FLVGPL 82
                59*****************764434567*********************************************.****76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       681  (0.0498098); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.46s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 490.87
//
Query:       MMETSP0890-20130614|642_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-07   30.1   0.0    4.9e-07   29.1   0.0    1.5  1  PF00013.24 KH domain
     0.0048   16.4   0.5      0.011   15.2   0.1    1.9  2  PF13014.1  KH domain
  ------ inclusion threshold ------
       0.36   10.2  10.1       0.14   11.5   1.0    3.2  3  PF13696.1  Zinc knuckle
        1.6    8.6   7.2       0.57   10.1   3.0    1.8  2  PF00098.18 Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.4e-10   4.9e-07      10      58 .]     268     338 ..     264     338 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.4e-10
                 CCHHH---TTHHHHHHHHHHT-EEEE......--S...............E..EEEEEE.SHHHHHHHHHHH CS
  PF00013.24  10 kigriIGkgGsnIkeIeeetgakIdv......pkd...............r.dtvtisG.dpesvekAkkli 58 
                 ++g i G++G++ k++e+++++kI +      + +               +  +v i+G + e v++A ++i
   MMETSP0890-20130614|642_1 268 FMGLILGPRGNHHKRLENDSNCKISIrgrgslR-EgsrgkdaqrdieddqDdLHVFIEGsNEEDVKNAVAMI 338
                 69************************6665550.0556666777777766256****************998 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.3e-06     0.011       2      41 ..     269     323 ..     268     325 .. 0.74
   2 ?   -3.0   0.0       1.6   5.6e+03      19      29 ..     469     480 ..     468     487 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.3e-06
  PF13014.1   2 vgliIGkgGetIkeIreetGakIrfpk...............easpgsnereitI 41 
                 gli G++G   k++++++++kI++                 + +++ ++ ++ I
  MMETSP0890-20130614|642_1 269 MGLILGPRGNHHKRLENDSNCKISIRGrgslregsrgkdaqrDIEDDQDDLHVFI 323
                799**********************887666666665555555555555556655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
  PF13014.1  19 etGakIrfpk.e 29 
                +t +++++p+ +
  MMETSP0890-20130614|642_1 469 TTSTQVTVPQtS 480
                588999***942 PP

>> PF13696.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   4.1e-05      0.14      11      26 ..     373     388 ..     371     395 .. 0.86
   2 ?    3.2   0.2     0.016        56       9      27 ..     398     416 ..     393     419 .. 0.87
   3 ?   -3.0   0.1       1.5     5e+03       3      10 ..     573     580 ..     572     580 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.1e-05
  PF13696.1  11 CHlCfkkGHyIsDCPq 26 
                CH+C +kGH    CP 
  MMETSP0890-20130614|642_1 373 CHICGEKGHRQWECPA 388
                **************97 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.016
  PF13696.1   9 YlCHlCfkkGHyIsDCPqa 27 
                  C lC  + H  +DC  +
  MMETSP0890-20130614|642_1 398 VRCALCGDTSHPTRDCALN 416
                57**************766 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.5
  PF13696.1   3 kapPpkYl 10 
                + +Pp Y+
  MMETSP0890-20130614|642_1 573 QVVPPGYQ 580
                579****8 PP

>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.0   0.00017      0.57       3      18 .]     373     388 ..     371     388 .. 0.92
   2 ?   -3.5   0.0       3.3   1.1e+04       2       8 ..     399     405 ..     398     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00017
                 -S------------SS CS
  PF00098.18   3 CynCGkeGHlardCpe 18 
                 C+ CG+ GH+  +Cp+
   MMETSP0890-20130614|642_1 373 CHICGEKGHRQWECPA 388
                 ***********99995 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.3
                 --S---- CS
  PF00098.18   2 kCynCGk 8  
                 +C  CG 
   MMETSP0890-20130614|642_1 399 RCALCGD 405
                 7989995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1078  (0.0788473); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.98
# Mc/sec: 1503.84
//
Query:       MMETSP0890-20130614|655_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-26   88.6   9.7      2e-11   43.2   0.1    3.1  3  PF00400.27 WD domain, G-beta repeat
    1.1e-05   23.7   7.5    0.00056   18.1   0.1    3.0  3  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.068   11.3   0.1      0.072   11.2   0.0    1.0  1  PF02239.11 Cytochrome D1 heme domain
       0.07   12.4   0.2        1.5    8.1   0.1    1.7  2  PF13360.1  PQQ-like domain
       0.11   11.8   0.1       0.15   11.3   0.1    1.2  1  PF05473.7  UL45 protein
       0.13   11.7   1.9       0.36   10.2   0.1    2.4  3  PF08972.6  Domain of unknown function (DUF1902)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.5   0.00025      0.58      28      39 .]       2      13 ..       1      13 [. 0.95
   2 !   41.0   0.2   4.2e-14   9.5e-11      10      39 .]      25      54 ..      18      54 .. 0.94
   3 !   43.2   0.1   8.6e-15     2e-11       1      39 []      58      96 ..      58      96 .. 0.97

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00025
                EEETTSEEEEEE CS
  PF00400.27 28 sgSrDgtirlWd 39
                ++S+D+t rlW+
   MMETSP0890-20130614|655_1  2 TSSWDKTARLWN 13
                89*********7 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 4.2e-14
                SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 10 HtspVtcvafspdgpllasgSrDgtirlWd 39
                H+++V+++afs +  l++++++D+t+r+Wd
   MMETSP0890-20130614|655_1 25 HEDSVYSCAFSSNDELIVTACDDKTVRIWD 54
                99***************************9 PP

  == domain 3    score: 43.2 bits;  conditional E-value: 8.6e-15
                TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                g++k+tl gH++ V++ +fs dg++++++S+D+t r+Wd
   MMETSP0890-20130614|655_1 58 GQLKRTLAGHQGLVRSSCFSADGNRIITASWDRTARIWD 96
                6789**********************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.5    0.0053        12     238     257 ..       4      23 ..       2      32 .. 0.81
   2 !   18.1   0.1   2.5e-07   0.00056     224     259 ..      31      66 ..      24      79 .. 0.82
   3 !    6.1   0.1     0.001       2.4     228     253 ..      78     102 ..      70     105 .] 0.78

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0053
  PF11715.3 238 srDgkLRvWnletgqclrtt 257
                s D++ R+Wn++++++++t 
  MMETSP0890-20130614|655_1   4 SWDKTARLWNITDATLIKTL 23 
                679************96654 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.5e-07
  PF11715.3 224 sssevegqtfvftlsrDgkLRvWnletgqclrttdi 259
                s++  +++++++t + D+++R+W++e gq+ rt + 
  MMETSP0890-20130614|655_1  31 SCAFSSNDELIVTACDDKTVRIWDTESGQLKRTLAG 66 
                56677899*********************9777654 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.001
  PF11715.3 228 vegqtfvftlsrDgkLRvWnletgqc 253
                 +g+ ++ t s D++ R+W+   g+ 
  MMETSP0890-20130614|655_1  78 ADGNRII-TASWDRTARIWDAQSGKV 102
                4555555.************999887 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05     0.072     259     348 ..       5      99 ..       1     104 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
                 TS--EEEE-------EE--TT-SEEEEE-TT-SS........HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-----EEEEEEE----EEEEEETTT CS
  PF02239.11 259 WkvvkeikvaGqglFvkthpdskqlwvdaflnpd........ndsvaviDsktleivltlaesaglkvvqvEfnkdGdevwlSvwdgkdalvvyDdkt 348
                 W +++ +        +kt  ++  ++  af   d        ++ v + D++  +   tla + g  v    f++dG+++    wd+     ++D+++
   MMETSP0890-20130614|655_1   5 WDKTARLWNITDATLIKTLRHEDSVYSCAFSSNDelivtacdDKTVRIWDTESGQLKRTLAGHQG-LVRSSCFSADGNRIITASWDRT--ARIWDAQS 99 
                 66666666666666677777777777777766664444444455566666666677777777777.4677778888888888888877..56777765 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0055        12     203     235 ..      28      61 ..       5      64 .. 0.69
   2 ?    8.1   0.1   0.00065       1.5       2      59 ..      47     103 ..      46     104 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0055
  PF13360.1 203 singlpildgdvlyvvs.ddgelvaldlktGkvl 235
                s++++   ++d l v+  dd ++  +d ++G+ +
  MMETSP0890-20130614|655_1  28 SVYSCAFSSNDELIVTAcDDKTVRIWDTESGQLK 61 
                4666666677777777778888888888888765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00065
  PF13360.1   2 egvvsaldaatGkelWrvdlkpalgggvseavldggtlfvasakgrlvaldaatGkvl 59 
                + +v+ +d+++G++  + + +++l    +    dg+++++as +++   +da++Gkvl
  MMETSP0890-20130614|655_1  47 DKTVRIWDTESGQLKRTLAGHQGLVRSSCFSA-DGNRIITASWDRTARIWDAQSGKVL 103
                56777788777666666533333333334455.9999999999999999999999986 PP

>> PF05473.7  UL45 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.6e-05      0.15     137     177 ..      12      52 ..       3      57 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.6e-05
  PF05473.7 137 lastsassseqkvnddslascltpkesvalvedcsetalvi 177
                 + t+a   ++ +++ds++sc ++++ + +v  c  + ++i
  MMETSP0890-20130614|655_1  12 WNITDATLIKTLRHEDSVYSCAFSSNDELIVTACDDKTVRI 52 
                4556666666669**************977777**999998 PP

>> PF08972.6  Domain of unknown function (DUF1902)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.31   7.2e+02       7      14 ..       5      12 ..       3      22 .. 0.87
   2 ?   -1.9   0.0         1   2.3e+03       6      12 ..      52      58 ..      41      59 .. 0.72
   3 ?   10.2   0.1   0.00016      0.36       2      21 ..      83     102 ..      82     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.31
               E------E CS
  PF08972.6  7 wDeEAgVW 14
               wD+ A  W
  MMETSP0890-20130614|655_1  5 WDKTARLW 12
               9**99999 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1
               EE----- CS
  PF08972.6  6 vwDeEAg 12
                wD E g
  MMETSP0890-20130614|655_1 52 IWDTESG 58
               4777765 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00016
                EEEEEE------EEEE-SS- CS
  PF08972.6   2 kiqavwDeEAgVWvAesddi 21 
                +i a wD  A +W A+s  +
  MMETSP0890-20130614|655_1  83 IITASWDRTARIWDAQSGKV 102
                589*************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.31s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 419.36
//
Query:       MMETSP0890-20130614|652_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-07   30.0   0.0    0.00095   18.7   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
    0.00023   20.6   0.8       0.54    9.8   0.0    2.2  2  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   7.6e-05      0.52      25      50 ..       3      28 ..       1      31 [. 0.87
   2 !   18.7   0.0   1.4e-07   0.00095      18      51 ..      33      66 ..      29      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.6e-05
  PF06743.10 25 lasalereLdsispelllnlvwSlcl 50
                +a +  ++L++++p++l n+v++++ 
   MMETSP0890-20130614|652_1  3 IADVARTKLNEFNPQALANTVLAFAT 28
                6678889****************986 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.4e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcll 51
                a ++f+++a a  ++Ld+++p++l n+ w+++++
   MMETSP0890-20130614|652_1 33 APALFNAIADAALTKLDGFKPQELANTTWAFACI 66
                6789****************************97 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2     9e-05      0.62      25      36 ..      11      22 ..       1      23 [. 0.80
   2 !    9.8   0.0   7.9e-05      0.54      17      36 ..      36      59 ..      33      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 9e-05
  PF07671.6 25 aerFNpQsIANt 36
                + FNpQ  ANt
  MMETSP0890-20130614|652_1 11 LNEFNPQALANT 22
               689********9 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 7.9e-05
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+         F+pQ+ ANt
  MMETSP0890-20130614|652_1 36 LFNAIAdaalTKLDGFKPQELANT 59
               888998888888999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.84
# Mc/sec: 208.25
//
Query:       MMETSP0890-20130614|659_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.3    6.6  12.9         28    4.9   8.9    1.9  1  PF11759.3 Keratin-associated matrix


Domain annotation for each model (and alignments):
>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.9     0.002        28      18      51 ..       3      36 ..       1      68 [. 0.50

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.002
  PF11759.3 18 yG.glGcgygCgygsirrlGyGsgfggyGsGsGYG 51
                G g+G g+g+g g + + G+G+   g  +G G G
  MMETSP0890-20130614|659_1  3 VGsGVGTGVGSGVGIFVGSGVGTA-VGQDVGLGVG 36
               344455555555554444444433.2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.55
# Mc/sec: 383.42
//
Query:       MMETSP0890-20130614|662_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-12   46.6   6.0    5.7e-11   41.7   0.1    2.4  3  PF00400.27 WD domain, G-beta repeat
    0.00062   17.9   0.3      0.072   11.1   0.0    2.0  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.034   13.4   0.0    1.1  1  PF13360.1  PQQ-like domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.6   0.00069       3.2      32      39 .]       2       9 ..       1       9 [. 0.93
   2 !   41.7   0.1   1.2e-14   5.7e-11       2      39 .]      14      51 ..      13      51 .. 0.95
   3 ?   -2.1   0.0      0.85   3.9e+03      12      19 ..      66      73 ..      55      76 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00069
                TSEEEEEE CS
  PF00400.27 32 DgtirlWd 39
                D+t+r+Wd
   MMETSP0890-20130614|662_1  2 DKTVRIWD 9 
                9******9 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 1.2e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++ +tl gH++ V++ +fs dg++++s+S+D+t r+Wd
   MMETSP0890-20130614|662_1 14 QLERTLAGHSDNVEDACFSVDGNRVISASKDHTARIWD 51
                6779*********************************9 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.85
                SSEEEEEE CS
  PF00400.27 12 spVtcvaf 19
                 +  +++f
   MMETSP0890-20130614|662_1 66 YSAISCDF 73
                44445555 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1   0.00058       2.6     240     260 ..       2      22 ..       1      34 [. 0.79
   2 !   11.1   0.0   1.6e-05     0.072     227     254 ..      32      58 ..      25      71 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00058
  PF11715.3 240 DgkLRvWnletgqclrttdil 260
                D+++R+W++e gq+ rt +  
  MMETSP0890-20130614|662_1   2 DKTVRIWDTERGQLERTLAGH 22 
                9************97777665 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.6e-05
  PF11715.3 227 evegqtfvftlsrDgkLRvWnletgqcl 254
                 v+g+ ++ + s D++ R+W+   g++l
  MMETSP0890-20130614|662_1  32 SVDGNRVI-SASKDHTARIWDAQSGKIL 58 
                57777777.**************99995 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.4e-06     0.034      24      65 ..      24      64 ..       1      70 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.4e-06
  PF13360.1 24 algggvseavldggtlfvasakgrlvaldaatGkvlWsksle 65
               ++    +  v dg+++++as + +   +da++Gk+l +++++
  MMETSP0890-20130614|662_1 24 DNVEDACFSV-DGNRVISASKDHTARIWDAQSGKILSEFKFN 64
               3555566678.*************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.31s 00:00:00.65 Elapsed: 00:00:00.86
# Mc/sec: 217.34
//
Query:       MMETSP0890-20130614|679_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   12.9   0.1        8.9    5.9   0.0    2.6  2  PF12549.3 Tyrosine hydroxylase N terminal
       0.12   12.3   0.1       0.13   12.1   0.0    1.1  1  PF09020.5 YopE, N terminal


Domain annotation for each model (and alignments):
>> PF12549.3  Tyrosine hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0013       8.9      13      22 ..      33      42 ..      26      44 .. 0.88
   2 ?    4.5   0.0    0.0035        24      13      22 ..      62      71 ..      59      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0013
  PF12549.3 13 fRravsEldp 22
               +R++++E+d+
  MMETSP0890-20130614|679_1 33 LRQSIIEDDT 42
               6*******96 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0035
  PF12549.3 13 fRravsEldp 22
               ++++++E+d+
  MMETSP0890-20130614|679_1 62 LAQPIIEDDT 71
               59******96 PP

>> PF09020.5  YopE, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05      0.13      18      65 ..      25      72 ..       7      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.9e-05
               --------------B-----HHHHHH-----------STTS--B--SS CS
  PF09020.5 18 sgsssvgemsgrsvsqqkseqyannlagrtespqgsslasriieklss 65
                g+s + ++    + +++s q a n++  t+  + s+la  iie  +s
  MMETSP0890-20130614|679_1 25 YGTSRIDNLRQSIIEDDTSSQVAINICAATNYSDASTLAQPIIEDDTS 72
               5888899999999999***************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 286.84
//
Query:       MMETSP0890-20130614|671_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-09   36.1   1.8    3.8e-09   36.1   1.3    2.1  2  PF00397.21 WW domain
    2.9e-08   34.1   0.0    4.1e-08   33.6   0.0    1.4  1  PF08613.6  Cyclin
    1.1e-06   28.1   0.0    2.2e-06   27.1   0.0    1.5  1  PF00134.18 Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   1.3   8.3e-13   3.8e-09       5      31 .]      75     101 ..      70     101 .. 0.88
   2 ?   -2.3   0.1      0.83   3.8e+03      16      20 ..     495     499 ..     490     502 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 8.3e-13
                 EE.E.E.E----EEEEETTT--EESS-- CS
  PF00397.21   5 We.ersddddGrvYYyNheTgetqWekP 31 
                 W+ +r++++ Gr+YYy+  T+etqW+kP
   MMETSP0890-20130614|671_1  75 WRsARDPKS-GRIYYYDVVTRETQWNKP 101
                 998888777.*****************9 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.83
                 EEEEE CS
  PF00397.21  16 vYYyN 20 
                 +YY++
   MMETSP0890-20130614|671_1 495 KYYFH 499
                 69988 PP

>> PF08613.6  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   9.1e-12   4.1e-08      50     148 ..     386     485 ..     182     486 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 9.1e-12
                -SS.-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHH----SS---HHHHHH--.---HHHHHHHHHHHHHHTTT- CS
  PF08613.6  50 pai.slgsylsrlqkfgesaplvllgaliYldrivkrcdkeassvtsanvyRLllvallvatKflvDlsysnekfakvg.gislkeLnkLEidFlflvdFd 148
                p++ +l+ +   + ++g+++  + +++liY++r+ k  ++  + + s+n++  ll ++++a+K+ +Dls+ n+ f+++     l+ +n LE+  l   +F+
  MMETSP0890-20130614|671_1 386 PSVkELVTFYRDVFSRGQMEVECIVASLIYVERLLK-AARGRFRLRSSNWRPTLLSGMIMASKVCDDLSMWNADFSHICrAFDLARINALEAALLRAYGFN 485
                444246667777779*********************.89999***********************************973689***********9999997 PP

>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   4.8e-10   2.2e-06      29     125 ..     386     485 ..     373     487 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.8e-10
                 HHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.....--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT- CS
  PF00134.18  29 emrsilidwlvevsekfklspetlylavnyldRflskrs....vkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfd 125
                    ++l+++  +v ++ +++ e+++ +  y++R+l+        + ++++   ++ +++A+Kv ++  ++++d+ +i+ +a++   i+ +E  +L++  f+
   MMETSP0890-20130614|671_1 386 PSVKELVTFYRDVFSRGQMEVECIVASLIYVERLLKAARgrfrLRSSNWRPTLLSGMIMASKVCDDLSMWNADFSHIC-RAFDLARINALEAALLRAYGFN 485
                 55789******************************998667899999******************************9.59**************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.95
# Mc/sec: 1528.62
//
Query:       MMETSP0890-20130614|678_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-15   54.5   0.4    1.7e-12   46.6   0.2    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.04   11.9   0.2      0.038   12.0   0.1    1.1  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.2   2.5e-16   1.7e-12       2      39 .]       8      45 ..       7      45 .. 0.95
   2 !    6.4   0.0    0.0012       7.9       3      15 ..      51      63 ..      49      64 .. 0.85

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 2.5e-16
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++ tl+gHt++V++++fspdg+ ++++S+D t r+W+
   MMETSP0890-20130614|678_1  8 RLLLTLSGHTNWVNACDFSPDGTGVVTASDDETARVWN 45
                56889********************************7 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0012
                EEEEEESSSSSEE CS
  PF00400.27  3 ckatlrgHtspVt 15
                ++ +l+gHts V+
   MMETSP0890-20130614|678_1 51 LLLVLEGHTSYVW 63
                5789*******98 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.5e-06     0.038     218     254 ..      20      52 ..       2      62 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.5e-06
  PF11715.3 218 aasldvsssevegqtfvftlsrDgkLRvWnletgqcl 254
                +++ d+s+   +g   v+t s D + RvWn e+g++l
  MMETSP0890-20130614|678_1  20 VNACDFSP---DGT-GVVTASDDETARVWNAENGALL 52 
                66777777...444.455****************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:01.55
# Mc/sec: 100.49
//
Query:       MMETSP0890-20130614|681_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   20.4   0.1    0.00022   20.3   0.1    1.1  1  PF07159.7 Protein of unknown function (DUF1394)
  ------ inclusion threshold ------
      0.012   15.5   0.4       0.11   12.5   0.1    2.1  2  PF08771.6 Rapamycin binding domain
       0.14   12.0   0.2       0.33   10.8   0.1    1.6  2  PF09429.5 WW domain binding protein 11


Domain annotation for each model (and alignments):
>> PF07159.7  Protein of unknown function (DUF1394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   4.8e-08   0.00022      33      96 ..      40     107 ..      17     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.8e-08
  PF07159.7  33 aileelqaykGagke....ireaiqnPadeklqekaweavvPlveklkrfyefslelekvlkklleal 96 
                ++lee+qayk  ++e    ir+a+   +d +   +a e++ P v+k+ ++y+ s  l   l++lle  
  MMETSP0890-20130614|681_1  40 EVLEEVQAYKAHEEEhqiaIRNAMISESDPERMASALESLKPAVQKIMKWYDVSEVLSIQLPGLLECT 107
                699*******9988633347777666677778889*****************************9854 PP

>> PF08771.6  Rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.3e-05      0.11      40      83 ..      13      57 ..       9      63 .. 0.85
   2 ?    1.5   0.0     0.063   2.9e+02      26      46 ..      65      85 ..      57     126 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
  PF08771.6 40 lheelekepeTlkEi.sFvqqfgseLkeAkellqkykstkdeeel 83
               l+++++  pe ++E  sF++++g +L e+ e +q+yk +++e+++
  MMETSP0890-20130614|681_1 13 LNQIVQAVPENVEEDgSFEKEYGDKLIEVLEEVQAYKAHEEEHQI 57
               56778888999988549********************99988765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.063
  PF08771.6 26 keknvekmleileplheelek 46
               +e++ e+m+++le l+  ++k
  MMETSP0890-20130614|681_1 65 SESDPERMASALESLKPAVQK 85
               566777777777777666655 PP

>> PF09429.5  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.48   2.2e+03      42      51 ..      41      50 ..      22      57 .. 0.57
   2 ?   10.8   0.1   7.3e-05      0.33      26      52 ..      56      82 ..      48     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.48
  PF09429.5 42 lkeeldkLke 51
               + ee +++k+
  MMETSP0890-20130614|681_1 41 VLEEVQAYKA 50
               3344444444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.3e-05
  PF09429.5 26 rqkrReaklakkdpeelkeeldkLkeq 52
               + ++R+a+++++dpe++ + l++Lk +
  MMETSP0890-20130614|681_1 56 QIAIRNAMISESDPERMASALESLKPA 82
               5689********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.52
# Mc/sec: 622.13
//
Query:       MMETSP0890-20130614|686_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   13.9   0.5      0.045   13.0   0.1    1.6  2  PF10794.4 Protein of unknown function (DUF2606)


Domain annotation for each model (and alignments):
>> PF10794.4  Protein of unknown function (DUF2606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.3e-06     0.045      54     103 ..     111     156 ..      74     178 .. 0.66
   2 ?   -2.9   0.0      0.28   3.8e+03      38      57 ..     212     231 ..     205     248 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-06
  PF10794.4  54 qpikdvevtlvkaadedeePskeigeiiGktdkeGkiiWksgrkGkYivl 103
                +++kd  ++++k  + d +P   ++ iiG td+e k+ Wk ++k   + +
  MMETSP0890-20130614|686_1 111 EDLKDDGLLIIK-HSRDGKP---RSRIIGLTDDERKLTWKDPKKSLGSFI 156
                334455688999.5555555...7889***************99654433 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.28
  PF10794.4  38 kkvvnpvtlhvedkekqpik 57 
                + ++ + t+ +e k++ ++k
  MMETSP0890-20130614|686_1 212 SLITASRTFDIECKDEDQVK 231
                55566667777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:01.10
# Mc/sec: 581.66
//
Query:       MMETSP0890-20130614|693_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-18   64.8   0.0    4.9e-18   64.7   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    8.2e-18   63.5   0.0    1.9e-08   33.8   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    2.2e-11   42.7   1.5    5.6e-05   22.4   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
      4e-10   38.7   0.4    0.00049   19.6   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
      8e-10   37.6   0.0    5.4e-05   22.5   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    2.2e-09   36.6   0.4    3.8e-09   35.9   0.3    1.4  1  PF13414.1  TPR repeat
    2.2e-06   26.8   1.3      0.028   14.0   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.4e-05   25.5   0.0    1.7e-05   25.1   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
    5.6e-05   22.9   1.6    0.00028   20.7   0.3    2.4  2  PF13431.1  Tetratricopeptide repeat
    0.00082   19.0   0.3        1.2    8.9   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00089   19.5   0.1        1.3    9.7   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
     0.0012   18.6   0.1       0.27   11.1   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat
     0.0024   18.0   0.2        1.6    9.2   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
     0.0074   16.2   0.0     0.0084   16.1   0.0    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.082   13.2   0.0        1.1    9.8   0.0    2.0  2  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   5.3e-21   4.9e-18      19      72 ..       2      56 ..       1      57 [] 0.97

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 5.3e-21
  PF13424.1 19 gdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
               g+ydeA  lye+a+++  +++g++hp++a++lnnla l+ ++g+ydeA++++e++
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIdEKTYGPNHPNVATSLNNLAGLLDKQGKYDEAKPLYERS 56
               89***************************************************96 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.1e-09   9.8e-07      16      42 .]       2      28 ..       1      28 [. 0.96
   2 !   33.8   0.0   2.1e-11   1.9e-08       1      28 [.      29      56 ..      29      57 .] 0.96

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.1e-09
  PF13374.1 16 gryeeAlaleeealairrrllGddHPd 42
               g+y+eA +l+e+a  i ++ +G++HP+
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDEKTYGPNHPN 28
               99************************5 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 2.1e-11
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
               +a++lnnLA +l ++g+y+eA +l+e++
  MMETSP0890-20130614|693_1 29 VATSLNNLAGLLDKQGKYDEAKPLYERS 56
               89************************86 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   4.3e-07    0.0004      15      32 ..       2      19 ..       1      20 [. 0.94
   2 !   22.4   0.0   6.1e-08   5.6e-05       2      26 ..      31      55 ..      30      56 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.3e-07
                T-HHHHHHHHHHHHHHHT CS
  PF00515.23 15 gkydeAleyyekALelnP 32
                gkydeA   ye+A+++++
   MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDE 19
                9***************97 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 6.1e-08
                HHHHHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyek 26
                 +l+nl+ ++ k+gkydeA   ye+
   MMETSP0890-20130614|693_1 31 TSLNNLAGLLDKQGKYDEAKPLYER 55
                689********************98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     2e-06    0.0018      15      32 ..       2      19 ..       1      21 [. 0.93
   2 !   19.6   0.0   5.4e-07   0.00049       2      26 ..      31      55 ..      30      57 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2e-06
                T-HHHHHHHHHHHHHH-T CS
  PF07719.12 15 gdyeeAleafekAleldP 32
                g+y+eA+ ++e+A+++d 
   MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDE 19
                9***************97 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 5.4e-07
                HHHHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafek 26
                  l+nl+ ++ k+g+y+eA+ ++e+
   MMETSP0890-20130614|693_1 31 TSLNNLAGLLDKQGKYDEAKPLYER 55
                5799********************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.5e-05     0.041      13      34 ..       2      23 ..       1      28 [. 0.81
   2 !   22.5   0.0   5.9e-08   5.4e-05       1      24 [.      32      55 ..      32      56 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.5e-05
  PF13176.1 13 gdyekAielyeraLaltkdpld 34
               g+y++A  lyera+++++  ++
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDEKTYG 23
               9***********8888866555 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 5.9e-08
  PF13176.1  1 allnLarlysrlgdyekAielyer 24
               +l+nLa l  ++g+y++A  lyer
  MMETSP0890-20130614|693_1 32 SLNNLAGLLDKQGKYDEAKPLYER 55
               79*********************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.3   4.2e-12   3.8e-09      17      64 ..       2      56 ..       1      57 [] 0.89

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 4.2e-12
  PF13414.1 17 gdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekA 64
               g+ydeA  +ye+A+++d     pn+++    ++nlA ++ k+g +y+eA   ye++
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDektygPNHPNvatSLNNLAGLLDKQG-KYDEAKPLYERS 56
               9***************99999977766666*************.6****9999875 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.1e-05     0.028      15      32 ..       2      19 ..       1      22 [. 0.90
   2 !   12.3   0.1   0.00011       0.1       3      26 ..      32      55 ..      30      56 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.1e-05
               T-HHHHHHHHH---HHHH CS
  PF13181.1 15 GdydkAkeylekalelkp 32
               G+yd+Ak  +e+a++++ 
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDE 19
               99**************97 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00011
               -TTT---HHHHTT-HHHHHHHHH- CS
  PF13181.1  3 ayynlGdiYrqlGdydkAkeylek 26
               +++nl+ ++ + G+yd+Ak  +e+
  MMETSP0890-20130614|693_1 32 SLNNLAGLLDKQGKYDEAKPLYER 55
               6899***************99986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.9e-08   1.7e-05      11      56 ..       2      55 ..       1      57 [] 0.95

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.9e-08
  PF13432.1 11 GdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallra 56
               G+ydeA +++e+a+  +        P  a  l +la +l ++g++deA  l+++
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDektygpnhPNVATSLNNLAGLLDKQGKYDEAKPLYER 55
               9*********99999999****99999**********************99887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.3   3.9e+03      27      33 ..       2       8 ..       1       8 [. 0.83
   2 !   20.7   0.3   3.1e-07   0.00028       1      33 [.      10      50 ..      10      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.3
  PF13431.1 27 GdleeAe 33
               G+++eA+
  MMETSP0890-20130614|693_1  2 GKYDEAK 8 
               8999996 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3.1e-07
  PF13431.1  1 lyekaleld........PnnadaynnLAelllnnGdleeAe 33
               lye+a+++d        Pn a ++nnLA ll ++G+++eA+
  MMETSP0890-20130614|693_1 10 LYERAIQIDektygpnhPNVATSLNNLAGLLDKQGKYDEAK 50
               69999999888888444555*******************97 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013       1.2      19      34 ..       2      17 ..       1      21 [. 0.85
   2 !    8.9   0.0    0.0013       1.2      12      30 ..      37      55 ..      28      57 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
                T-HHHHHHHHHHHHHH CS
  PF04212.13 19 gkyeeAlelYkeAlel 34
                gky+eA  lY+ A+++
   MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQI 17
                8999999999999986 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0013
                HHHHHHTT-HHHHHHHHHH CS
  PF04212.13 12 AveaDeagkyeeAlelYke 30
                A   D++gky+eA  lY+ 
   MMETSP0890-20130614|693_1 37 AGLLDKQGKYDEAKPLYER 55
                5558*************86 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0014       1.3      15      33 ..       2      20 ..       1      34 [. 0.85
   2 !    8.8   0.0    0.0028       2.6       5      26 ..      34      55 ..      29      57 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0014
  PF13428.1 15 GdpdeAiallrralalaPd 33
               G +deA  l++ra++ + +
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDEK 20
               89************97754 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0028
  PF13428.1  5 lalarallalGdpdeAiallrr 26
                 la +l  +G +deA  l++r
  MMETSP0890-20130614|693_1 34 NNLAGLLDKQGKYDEAKPLYER 55
               57999***************98 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0067       6.1      15      29 ..       2      16 ..       1      36 [. 0.85
   2 !   11.1   0.0    0.0003      0.27       6      27 ..      35      56 ..      30      57 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0067
  PF12688.2 15 GeeakAvplYrrAla 29
               G+ ++A plY+rA++
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQ 16
               899*********985 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0003
  PF12688.2  6 eragarDstGeeakAvplYrrA 27
               + ag  D  G+ ++A plY+r 
  MMETSP0890-20130614|693_1 35 NLAGLLDKQGKYDEAKPLYERS 56
               679****************985 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.009       8.2      14      28 ..       2      16 ..       1      18 [. 0.91
   2 !    9.2   0.0    0.0017       1.6       6      25 ..      36      55 ..      35      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.009
               HHHHHHHHHHHHHHH CS
  PF13174.1 14 gdtdeAlealerlik 28
               g++deA+ ++er i+
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQ 16
               69**********997 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0017
               HHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealer 25
               la +++k+g++deA+ ++er
  MMETSP0890-20130614|693_1 36 LAGLLDKQGKYDEAKPLYER 55
               677889999********997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.2e-06    0.0084       3      49 ..       2      54 ..       1      57 [] 0.80

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.2e-06
               T-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHH CS
  PF12895.2  3 hnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellr 49
               + y++A  l+e++++ + k      p  +++l +lA  l ++g+y++A  l++
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYERAIQIDEKtygpnHPnVATSLNNLAGLLDKQGKYDEAKPLYE 54
               57999999********9998877422455577779*************87774 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.44     4e+02      15      26 .]       2      13 ..       1      13 [. 0.88
   2 ?    9.8   0.0    0.0012       1.1       4      26 .]      33      55 ..      30      55 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.44
               ------HHHHHT CS
  PF07721.9 15 GdldeAraller 26
               G +deA  l er
  MMETSP0890-20130614|693_1  2 GKYDEAKPLYER 13
               889***999987 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0012
               H---HHHHHH-------HHHHHT CS
  PF07721.9  4 llaLArallalGdldeAraller 26
               l +LA +l  +G +deA  l er
  MMETSP0890-20130614|693_1 33 LNNLAGLLDKQGKYDEAKPLYER 55
               5699*************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.55
# Mc/sec: 248.35
//
Query:       MMETSP0890-20130614|696_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-34  116.9   3.4    4.2e-20   71.3   0.4    2.0  2  PF13424.1  Tetratricopeptide repeat
    3.2e-22   77.5   7.4    8.7e-16   57.1   0.1    3.0  3  PF13374.1  Tetratricopeptide repeat
    8.1e-11   40.7   0.7    1.3e-06   27.5   0.0    3.0  3  PF13176.1  Tetratricopeptide repeat
    3.2e-10   39.0   7.3    2.2e-07   30.0   0.4    2.9  3  PF00515.23 Tetratricopeptide repeat
    3.5e-10   39.2   1.3    8.1e-10   38.0   0.6    1.7  2  PF13414.1  TPR repeat
      2e-09   37.7   2.9    2.4e-05   24.7   0.2    1.8  2  PF13432.1  Tetratricopeptide repeat
    2.7e-07   29.8   7.1    4.2e-06   26.1   0.6    2.8  3  PF07719.12 Tetratricopeptide repeat
    3.6e-06   26.6   4.7      0.014   15.4   0.5    3.2  2  PF13431.1  Tetratricopeptide repeat
    0.00023   21.3   0.4     0.0016   18.7   0.1    2.3  3  PF13428.1  Tetratricopeptide repeat
     0.0005   19.5   4.0     0.0008   18.9   0.2    2.5  3  PF13181.1  Tetratricopeptide repeat
     0.0011   18.6   0.3        1.6    8.4   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
     0.0019   18.3   0.1        0.5   10.8   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
     0.0028   17.9   0.9       0.14   12.4   0.1    2.2  2  PF14357.1  Domain of unknown function (DUF4404)
     0.0038   17.1   0.0     0.0053   16.6   0.0    1.4  1  PF12688.2  Tetratrico peptide repeat
     0.0047   16.0   0.0      0.026   13.6   0.0    1.9  2  PF10516.4  SHNi-TPR
  ------ inclusion threshold ------
      0.015   15.2   0.1       0.81    9.7   0.0    2.0  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.041   13.6   0.3       0.07   12.9   0.1    1.5  1  PF04212.13 MIT (microtubule interacting and transport) domain
      0.045   14.1   0.2        0.3   11.5   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
      0.047   12.5   0.0      0.056   12.2   0.0    1.1  1  PF04910.9  Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   6.6e-17   4.8e-14      28      78 .]       1      52 [.       1      52 [. 0.97
   2 !   71.3   0.4   5.9e-23   4.2e-20       1      62 [.      16      78 ..      16      79 .] 0.97

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 6.6e-17
  PF13424.1 28 yekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
               +e+a+e+  +e+g+ hp +a  lnnla l+ ++g+ydeA++++e+Al+i+e+
  MMETSP0890-20130614|696_1  1 FERAIEIlEKEHGPSHPHVAAGLNNLAGLLDEQGKYDEAKPLYERALKIREE 52
               79*****9999**************************************985 PP

  == domain 2    score: 71.3 bits;  conditional E-value: 5.9e-23
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdy 62
               hp++a+ lnnla++l ++g+ydeA  lye+al++  + lg++hpd+a++lnnla l++ +g+y
  MMETSP0890-20130614|696_1 16 HPHVAAGLNNLAGLLDEQGKYDEAKPLYERALKIrEEMLGPNHPDVASTLNNLAALLHNQGKY 78
               89********************************77788**********************99 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0071       5.1      26      42 .]       2      18 ..       1      18 [. 0.92
   2 !   57.1   0.1   1.2e-18   8.7e-16       1      42 []      19      60 ..      19      60 .. 0.98
   3 !   17.3   0.3     4e-06    0.0029       1      18 [.      61      78 ..      61      79 .] 0.95

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0071
  PF13374.1 26 eealairrrllGddHPd 42
               e+a +i ++ +G+ HP+
  MMETSP0890-20130614|696_1  2 ERAIEILEKEHGPSHPH 18
               8999************6 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 1.2e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +aa lnnLA +l ++g+y+eA +l+e+al ir++ lG++HPd
  MMETSP0890-20130614|696_1 19 VAAGLNNLAGLLDEQGKYDEAKPLYERALKIREEMLGPNHPD 60
               7899*************************************8 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 4e-06
  PF13374.1  1 taaalnnLAlalrargry 18
               +a++lnnLA +l+++g+y
  MMETSP0890-20130614|696_1 61 VASTLNNLAALLHNQGKY 78
               79**************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.079        57      15      24 ..       1      10 [.       1      18 [. 0.90
   2 !   27.5   0.0   1.9e-09   1.3e-06       2      34 ..      23      55 ..      22      57 .. 0.92
   3 !    6.9   0.1    0.0075       5.4       1      15 [.      64      78 ..      64      79 .] 0.95

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.079
  PF13176.1 15 yekAielyer 24
               +e+Aie++e+
  MMETSP0890-20130614|696_1  1 FERAIEILEK 10
               79******98 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1.9e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
               l+nLa l  ++g+y++A  lyeraL+++++ l+
  MMETSP0890-20130614|696_1 23 LNNLAGLLDEQGKYDEAKPLYERALKIREEMLG 55
               89**********************999988766 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0075
  PF13176.1  1 allnLarlysrlgdy 15
               +l+nLa l  ++g+y
  MMETSP0890-20130614|696_1 64 TLNNLAALLHNQGKY 78
               79***********99 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.48   3.4e+02      24      30 ..       1       7 [.       1      10 [. 0.78
   2 !   30.0   0.4   3.1e-10   2.2e-07       1      32 [.      20      51 ..      20      53 .. 0.93
   3 !   11.2   0.1   0.00027      0.19       1      17 [.      62      78 ..      62      79 .] 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.48
                HHHHHHH CS
  PF00515.23 24 yekALel 30
                +e+A+e+
   MMETSP0890-20130614|696_1  1 FERAIEI 7 
                7899998 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 3.1e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a  l+nl+ ++ ++gkydeA   ye+AL++++
   MMETSP0890-20130614|696_1 20 AAGLNNLAGLLDEQGKYDEAKPLYERALKIRE 51
                6789*************************986 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHHHTT-H CS
  PF00515.23  1 akalynlGnaylklgky 17
                a +l+nl+++++++gky
   MMETSP0890-20130614|696_1 62 ASTLNNLAALLHNQGKY 78
                6789************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.2   1.4e+02      26      44 ..       1      27 [.       1      27 [. 0.60
   2 !   38.0   0.6   1.1e-12   8.1e-10       2      54 ..      19      78 ..      18      79 .] 0.86

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.2
  PF13414.1 26 yekAleld........pnnaelyynlA 44
               +e+A+e+         p+ a  ++nlA
  MMETSP0890-20130614|696_1  1 FERAIEILekehgpshPHVAAGLNNLA 27
               688898844444433355566888887 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 1.1e-12
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdy 54
               +A  l++l+  l ++g+ydeA  +ye+Al+++     pn+++    ++nlA+++ ++gk y
  MMETSP0890-20130614|696_1 19 VAAGLNNLAGLLDEQGKYDEAKPLYERALKIReemlgPNHPDvasTLNNLAALLHNQGK-Y 78
               57789*************************966677766666666*************5.6 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.1e-06    0.0015      19      60 ..       4      49 ..       1      53 [. 0.75
   2 !   24.7   0.2   3.3e-08   2.4e-05       3      47 ..      26      78 ..      24      79 .] 0.93

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.1e-06
  PF13432.1 19 aleaalala....PeaaeallllaeallrlgrldeAaallraalal 60
               a+e + +++    P+ a  l +la +l ++g++deA  l+++al++
  MMETSP0890-20130614|696_1  4 AIEILEKEHgpshPHVAAGLNNLAGLLDEQGKYDEAKPLYERALKI 49
               5555666667777888888888888888888999888888888875 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 3.3e-08
  PF13432.1  3 lArallraGdydeAlaaleaalala........Peaaeallllaeallrlgrl 47
               lA +l ++G+ydeA +++e+al+          P+ a  l +la +l+ +g++
  MMETSP0890-20130614|696_1 26 LAGLLDEQGKYDEAKPLYERALKIReemlgpnhPDVASTLNNLAALLHNQGKY 78
               788999************************99999999******999999987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.3   9.6e+02      24      30 ..       1       7 [.       1      10 [. 0.62
   2 !   26.1   0.6   5.9e-09   4.2e-06       1      31 [.      20      50 ..      20      52 .. 0.93
   3 ?    6.2   0.1     0.013       9.7       2      17 ..      63      78 ..      62      79 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 1.3
                HHHHHHH CS
  PF07719.12 24 fekAlel 30
                fe+A+e+
   MMETSP0890-20130614|696_1  1 FERAIEI 7 
                6777776 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 5.9e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a +l+nl+ ++ ++g+y+eA+ ++e+Al++ 
   MMETSP0890-20130614|696_1 20 AAGLNNLAGLLDEQGKYDEAKPLYERALKIR 50
                6789*************************86 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.013
                HHHHHHHHHHHHTT-H CS
  PF07719.12  2 ealynlGlayyklgdy 17
                  l+nl+ ++ ++g+y
   MMETSP0890-20130614|696_1 63 STLNNLAALLHNQGKY 78
                579************9 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00043      0.31      10      33 ..      17      40 ..       1      41 [. 0.79
   2 !   15.4   0.5   1.9e-05     0.014       2      29 ..      43      78 ..      42      79 .] 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00043
  PF13431.1 10 PnnadaynnLAelllnnGdleeAe 33
               P  a  +nnLA ll ++G+++eA+
  MMETSP0890-20130614|696_1 17 PHVAAGLNNLAGLLDEQGKYDEAK 40
               5558889***************97 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.9e-05
  PF13431.1  2 yekaleld.....Pnn...adaynnLAelllnnGdl 29
               ye+al++      Pn+   a  +nnLA ll+n+G++
  MMETSP0890-20130614|696_1 43 YERALKIReemlgPNHpdvASTLNNLAALLHNQGKY 78
               7777777444444444444***************98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.6   1.1e+03      17      26 ..       1      10 [.       1      23 [. 0.70
   2 !   18.7   0.1   2.2e-06    0.0016       2      37 ..      21      61 ..      19      71 .. 0.76
   3 ?   -0.9   0.0       4.7   3.4e+03       4      16 ..      65      77 ..      62      78 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.6
  PF13428.1 17 pdeAiallrr 26
               +++Ai+ l++
  MMETSP0890-20130614|696_1  1 FERAIEILEK 10
               6899999987 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.2e-06
  PF13428.1  2 eallalarallalGdpdeAiallrrala.....laPddaea 37
               + l  la +l ++G +deA  l++ral+     l+P+++++
  MMETSP0890-20130614|696_1 21 AGLNNLAGLLDEQGKYDEAKPLYERALKireemLGPNHPDV 61
               567789*********************97777755555554 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 4.7
  PF13428.1  4 llalarallalGd 16
               l  la++l ++G 
  MMETSP0890-20130614|696_1 65 LNNLAALLHNQGK 77
               5678888888875 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.4   1.7e+03      18      26 ..       2      10 ..       1      10 [. 0.61
   2 !   18.9   0.2   1.1e-06    0.0008       2      31 ..      21      50 ..      20      52 .. 0.91
   3 ?    1.0   0.0      0.58   4.2e+02       3      17 ..      64      78 ..      62      79 .] 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2.4
               HHHHHHHH- CS
  PF13181.1 18 dkAkeylek 26
               + A+e lek
  MMETSP0890-20130614|696_1  2 ERAIEILEK 10
               567777766 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.1e-06
               --TTT---HHHHTT-HHHHHHHHH---HHH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
               + ++nl+ ++ + G+yd+Ak  +e+al++ 
  MMETSP0890-20130614|696_1 21 AGLNNLAGLLDEQGKYDEAKPLYERALKIR 50
               56899***********************95 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.58
               -TTT---HHHHTT-H CS
  PF13181.1  3 ayynlGdiYrqlGdy 17
               +++nl+ ++ + G+y
  MMETSP0890-20130614|696_1 64 TLNNLAALLHNQGKY 78
               688999999999987 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0023       1.7      14      36 .]      33      53 ..      32      53 .. 0.88
   2 !    8.4   0.0    0.0023       1.6       7      17 ..      68      78 ..      65      79 .] 0.93

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
               TT-HHHHHHH..HHHHHHH-TT- CS
  PF07720.7 14 kkkyqeArelfsYallaildken 36
               ++ky+eA  l  Y+ + ++++e+
  MMETSP0890-20130614|696_1 33 QGKYDEAKPL--YERALKIREEM 53
               9*********..88999999875 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0023
               HHHHHHHTT-H CS
  PF07720.7  7 lAaefynkkky 17
               lAa ++n++ky
  MMETSP0890-20130614|696_1 68 LAALLHNQGKY 78
               8********** PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0007       0.5       2      26 .]      21      45 ..      20      45 .. 0.89
   2 ?    5.6   0.0     0.032        23       2      16 ..      63      77 ..      62      79 .] 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0007
               HHH---HHHHHH-------HHHHHT CS
  PF07721.9  2 rallaLArallalGdldeAraller 26
               + l +LA +l ++G +deA  l er
  MMETSP0890-20130614|696_1 21 AGLNNLAGLLDEQGKYDEAKPLYER 45
               56779**************999987 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.032
               HHH---HHHHHH--- CS
  PF07721.9  2 rallaLArallalGd 16
                +l +LA +l+ +G 
  MMETSP0890-20130614|696_1 63 STLNNLAALLHNQGK 77
               57789********96 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.035        25      65      81 ..      15      31 ..       1      34 [. 0.78
   2 !   12.4   0.1   0.00019      0.14      42      84 ..      33      76 ..      29      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.035
  PF14357.1 65 eHPklagtlrnildsLa 81
               +HP++a+ l+n++  L 
  MMETSP0890-20130614|696_1 15 SHPHVAAGLNNLAGLLD 31
               79*********998886 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00019
  PF14357.1 42 daseaedeslaerlne.averFeaeHPklagtlrnildsLanmG 84
               + + +e ++l er  +   e    +HP++a+tl+n++  L+n G
  MMETSP0890-20130614|696_1 33 QGKYDEAKPLYERALKiREEMLGPNHPDVASTLNNLAALLHNQG 76
               5566667777777666466677889***************9865 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.4e-06    0.0053       6      51 ..      25      68 ..      20      76 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.4e-06
  PF12688.2  6 eragarDstGeeakAvplYrrAlaaGLagarrrratiqlaSsLRnl 51
               + ag  D  G+ ++A plY+rAl+  +++          aS+L nl
  MMETSP0890-20130614|696_1 25 NLAGLLDEQGKYDEAKPLYERALK--IREEMLGPNHPDVASTLNNL 68
               679*******************97..56666666666677777776 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.55     4e+02      24      34 ..       1      11 [.       1      15 [. 0.77
   2 !   13.6   0.0   3.6e-05     0.026      13      37 ..      32      56 ..      24      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.55
  PF10516.4 24 lrkaLeLreql 34
               +++a+e+ e+ 
  MMETSP0890-20130614|696_1  1 FERAIEILEKE 11
               68999*99985 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.6e-05
  PF10516.4 13 EnEnFpqAveDlrkaLeLreqllpp 37
               E++++++A   +++aL++re+ l p
  MMETSP0890-20130614|696_1 32 EQGKYDEAKPLYERALKIREEMLGP 56
               899******************9876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0017       1.3      41      83 ..       1      45 [.       1      46 [. 0.69
   2 ?    9.7   0.0    0.0011      0.81       1      41 [.      32      78 ..      32      79 .] 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0017
               HHHHHHHHHCTSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
  PF12895.2 41 ykrAyellrkleldssslgcry...llArcllklgkydeAiavLek 83
               ++rA+e+l+ +e+ +s+++ +     lA  l ++gkydeA  ++e+
  MMETSP0890-20130614|696_1  1 FERAIEILE-KEHGPSHPHVAAglnNLAGLLDEQGKYDEAKPLYER 45
               689999996.566666655554323446777799999999988887 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0011
               HTT-HHHHHHHHHHHCCC-ST....-H.HHHCHHH.HHHHHHH---H CS
  PF12895.2  1 eqhnyknAlflaekllaespk....dp.edaylya.lAlclylngey 41
               eq+ y++A  l+e++l+   +    ++ + a+ ++ lA  l ++g+y
  MMETSP0890-20130614|696_1 32 EQGKYDEAKPLYERALKIREEmlgpNHpDVASTLNnLAALLHNQGKY 78
               689999**********9998898873345454444499999999999 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.7e-05      0.07      15      34 ..      30      49 ..      23      55 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.7e-05
                HHHTT-HHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlel 34
                 De+gky+eA  lY+ Al++
   MMETSP0890-20130614|696_1 30 LDEQGKYDEAKPLYERALKI 49
                69***************987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.1   1.5e+03      17      25 ..       2      10 ..       1      10 [. 0.84
   2 ?   11.5   0.0   0.00041       0.3       6      28 ..      26      48 ..      25      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 2.1
               HHHHHHHHH CS
  PF13174.1 17 deAlealer 25
               ++A+e+le+
  MMETSP0890-20130614|696_1  2 ERAIEILEK 10
               799**9996 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00041
               HHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerlik 28
               la +++++g++deA+ ++er +k
  MMETSP0890-20130614|696_1 26 LAGLLDEQGKYDEAKPLYERALK 48
               666788999***********987 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.8e-05     0.056      36      87 ..      16      67 ..      14      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.8e-05
  PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnass 87
               +P    +L +l+ ++ eqg++ +A  l eraL i e+++ p+   + ++ ++
  MMETSP0890-20130614|696_1 16 HPHVAAGLNNLAGLLDEQGKYDEAKPLYERALKIREEMLGPNHPDVASTLNN 67
               6777889********************************9998776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 310.35
//
Query:       MMETSP0890-20130614|700_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.0   0.5     0.0018   17.8   0.0    2.9  3  PF00023.25 Ankyrin repeat
    1.3e-07   31.7   0.0    3.8e-07   30.2   0.0    1.7  2  PF12796.2  Ankyrin repeats (3 copies)
    0.00011   22.2   0.0     0.0014   18.7   0.0    2.5  2  PF13857.1  Ankyrin repeats (many copies)
    0.00027   20.8   0.0       0.16   12.0   0.0    2.5  2  PF00041.16 Fibronectin type III domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.032   14.6   0.0    1.8  1  PF13637.1  Ankyrin repeats (many copies)
       0.13   12.4   0.0        6.1    7.2   0.0    2.9  2  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00017      0.38      15      31 ..      15      31 ..      12      33 .. 0.84
   2 !   17.8   0.0   7.9e-07    0.0018       3      29 ..      37      63 ..      35      65 .. 0.93
   3 ?   -3.5   0.0       4.5     1e+04       9      26 ..     370     387 ..     369     388 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00017
                HHHHHHHHHTTSSTTHB CS
  PF00023.25 15 levvklLlsqGAdlnaq 31
                + +v+lLl +GAd+n++
   MMETSP0890-20130614|700_1 15 ATCVSLLLAAGADPNVT 31
                669************86 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 7.9e-07
                CBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25  3 fTPLHlAalrgnlevvklLlsqGAdln 29
                +TPL  A+l+g+ e ++lLl++GA l+
   MMETSP0890-20130614|700_1 37 YTPLIGACLSGDSESCRLLLQAGARLD 63
                8***********************887 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 4.5
                 HHHTTHHHHHHHHHHTTS CS
  PF00023.25   9 AalrgnlevvklLlsqGA 26 
                 A+   nl+vv+  l+ GA
   MMETSP0890-20130614|700_1 370 AIAQANLSVVQSQLQGGA 387
                 666778999998777776 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.7e-10   3.8e-07      37      87 ..      13      64 ..      11      66 .. 0.92
   2 ?   -3.9   0.0         6   1.4e+04       4      20 ..     370     386 ..     368     405 .. 0.54

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.7e-10
  PF12796.2 37 gnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnl 87
               g   +v+lLl+agad+n ++ ++++tpL+ A+ +g+ e ++lLl++ga +++
  MMETSP0890-20130614|700_1 13 GFATCVSLLLAAGADPNVTSkQQNYTPLIGACLSGDSESCRLLLQAGARLDS 64
               66789*************9999**************************9875 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6
  PF12796.2   4 AaengnlelvklLlekg 20 
                A+ + nl++v+  l+ g
  MMETSP0890-20130614|700_1 370 AIAQANLSVVQSQLQGG 386
                33334444444333333 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0047        11      26      47 ..      12      33 ..      10      34 .. 0.90
   2 !   18.7   0.0   5.9e-07    0.0014       1      42 [.      21      62 ..      21      69 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0047
  PF13857.1 26 ggalevvrlLlapgadlnlrds 47
               +g +++v lLla+gad+n++ +
  MMETSP0890-20130614|700_1 12 NGFATCVSLLLAAGADPNVTSK 33
               6899**************9976 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 5.9e-07
  PF13857.1  1 Llehgpadvnatdeggn.tpLhlAakggalevvrlLlapgadl 42
               Ll++g ad+n t ++ n tpL  A+  g++e +rlLl++ga l
  MMETSP0890-20130614|700_1 21 LLAAG-ADPNVTSKQQNyTPLIGACLSGDSESCRLLLQAGARL 62
               89999.888888888888*******************887765 PP

>> PF00041.16  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0048        11      12      39 ..     136     164 ..     133     177 .. 0.87
   2 !   12.0   0.0   6.8e-05      0.16      52      82 ..     262     293 ..     252     298 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0048
                 CSSEEEEEEE-BS.HHSSTBSEEEEEEEE CS
  PF00041.16  12 tstsltlsWsppk.dgggpitgYeveyre 39 
                 +++s++++W + + + + +i++Y v+   
   MMETSP0890-20130614|700_1 136 RERSVEVRWRKLPdQHNFEIQRYVVRAYA 164
                 689**********************8765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.8e-05
                 CCTTS.EEEEES--TT-EEEEEEEEEC----- CS
  PF00041.16  52 prttt.svtltgLkpgteYefrVqavngageg 82 
                 p ++t s  ++gLkp+ +Y+f+V  v  a +g
   MMETSP0890-20130614|700_1 262 PDPSTaSTLIHGLKPSVTYHFTVSCVACANNG 293
                 4444449****************977666555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-05     0.032      16      54 .]      17      56 ..      16      56 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-05
  PF13637.1 16 lvklLlekgidinrtdesGn.taLhiAalrgnieilklLl 54
               +v lLl+ g+d+n t +++n t+L+ A+l g+ e ++lLl
  MMETSP0890-20130614|700_1 17 CVSLLLAAGADPNVTSKQQNyTPLIGACLSGDSESCRLLL 56
               5889***********9997779****************98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.17   3.9e+02      17      29 ..      17      29 ..      11      30 .. 0.83
   2 ?    7.2   0.0    0.0027       6.1       3      28 ..      37      62 ..      35      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.17
  PF13606.1 17 lveaLlengadin 29
                v++Ll +gad+n
  MMETSP0890-20130614|700_1 17 CVSLLLAAGADPN 29
               5899*******99 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0027
  PF13606.1  3 nTpLhlAasngrielveaLlengadi 28
               +TpL  A+ +g  e +++Ll++ga +
  MMETSP0890-20130614|700_1 37 YTPLIGACLSGDSESCRLLLQAGARL 62
               8**********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:01.38
# Mc/sec: 868.25
//
Query:       MMETSP0890-20130614|704_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-22   77.1   0.0    9.2e-22   76.6   0.0    1.2  1  PF00462.19 Glutaredoxin
     0.0027   17.7   0.0     0.0042   17.2   0.0    1.4  1  PF05768.9  Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
       0.03   14.4   0.0      0.042   13.9   0.0    1.2  1  PF13417.1  Glutathione S-transferase, N-terminal domain
       0.24   11.3   1.5        7.2    6.4   0.3    2.3  1  PF13462.1  Thioredoxin


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   2.7e-25   9.2e-22       1      59 [.      54     115 ..      54     116 .. 0.98

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 2.7e-25
                 EEEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCH...HHHHHHHHHHSSBSSSEEEETTEE CS
  PF00462.19   1 vvvftkptCpyCkkakrlLdelgvkyeeidvdedp...eireelkelsgwrtvPqvfidgeh 59 
                 vv+f+k++Cp+C+k+k+l+++l+v+ +++++d+ +   ei+ +lke++g++tvP+vfi+geh
   MMETSP0890-20130614|704_1  54 VVIFSKSYCPFCAKTKALFQSLNVDADIYELDQRDdgaEIQSKLKEKTGQSTVPNVFIKGEH 115
                 8*********************************8999***********************9 PP

>> PF05768.9  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0042       2      35 ..      54      88 ..      53     131 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.2e-06
               EEEEE-SSSCHHHHHHHHCCC..CT--.SEEEEEE CS
  PF05768.9  2 ltLyskpgChLCeqakelLkelkleeg.lelevid 35
               ++++sk +C+ C + k+l + l+++ + +el+++d
  MMETSP0890-20130614|704_1 54 VVIFSKSYCPFCAKTKALFQSLNVDADiYELDQRD 88
               789*******************9999989999998 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.042       2      52 ..      57     111 ..      56     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-05
                E--TTSHHHHHHHHHHHH----EEE----TTTT....HHHHHHH-TT--SSEEE- CS
  PF13417.1   2 ygspfSpyarkvrlaLeekglpyelvevtpgkk....rpellalnpkgkvPvLed 52 
                ++ +++p++ k  ++ + ++++  ++e++  ++     + l++++++ +vP   +
  MMETSP0890-20130614|704_1  57 FSKSYCPFCAKTKALFQSLNVDADIYELDQRDDgaeiQSKLKEKTGQSTVPNVFI 111
                67789***********************9888766667788999*******6655 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3    0.0021       7.2      16      34 ..      53      71 ..      47      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0021
  PF13462.1 16 tvieyadltCphCarfhee 34
                v++++   Cp+Ca+ +  
  MMETSP0890-20130614|704_1 53 DVVIFSKSYCPFCAKTKAL 71
               4899**********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.55
# Mc/sec: 592.55
//
Query:       MMETSP0890-20130614|708_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.0   0.0    0.00029   20.6   0.0    1.2  1  PF13527.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.031   14.1   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.2e-08   0.00029       4     100 ..      10     112 ..       8     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.2e-08
  PF13527.1   4 elteedldeilellkyvFqdeespl......keireakrnlleegrvlgaedngklvgqlallpfelnvpGkelpaagvtgVatapehrgrgllrkLlarlle 100
                +++e+ l ++++ ++++F+   +        ++++ + ++ + e+++  +  +g + ++++ + + + + +k+ ++ +++ Va  p hrg+gl  + ++++++
  MMETSP0890-20130614|708_1  10 TIQEDVLRAVAKTWSEAFPTAADRDryaealARRELEDSDSFAEEWIHYILSEGVCLAACRTFLRIVFFDDKPRRILALAHVASLPGHRGKGLGVEVVREAFD 112
                678888999**********999988787777333334566677899******************99999************************9999988876 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.5e-06     0.031      23      53 ..      83     113 ..      59     134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.5e-06
                 TTEEEEEEEEESGGGTTTT-HHHHHHHHHHH CS
  PF00583.19  23 ertayieglaVspeyrgqGiGkaLleallek 53 
                  r + +  +a +p +rg+G+G + ++++ + 
   MMETSP0890-20130614|708_1  83 RRILALAHVASLPGHRGKGLGVEVVREAFDA 113
                 48899999******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.55
# Mc/sec: 810.40
//
Query:       MMETSP0890-20130614|712_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-40  137.5   0.4    6.5e-40  136.6   0.3    1.4  1  PF03878.10 YIF1
    0.00024   20.5   2.5    0.00024   20.5   1.8    2.1  2  PF04893.12 Yip1 domain


Domain annotation for each model (and alignments):
>> PF03878.10  YIF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.3   9.5e-44   6.5e-40      21     202 ..     191     392 ..     168     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: 136.6 bits;  conditional E-value: 9.5e-44
  PF03878.10  21 qgkelvekniekfvs.vsklkyyFavdtaYvvkkLklllfPylhrdWerkle.....................resyvpPreDvnaPDlYiPlmafityvllaglllGlqdrFsPealglkassalavvllellilklglyllnvkselklldllaysGYkfvglilavlakllfgksgyylvlaytslalgvFllrslktkll 202
                 qg +l+ + +  f+s  skl+ yFav+++Y   kL+ ll+P++++ W+r+                          y  P +D naPDlYiPl+af t+ l+ g   G+ ++F+P++l   +s+   + ++el ++++gly  +    ++lld+  ++GYk+v l++  l +l+fg  +yy  layt la  +++l+++  ++ 
   MMETSP0890-20130614|712_1 191 QGLQLMSRWMPGFASfWSKLRSYFAVSHRYTLSKLRALLIPWTKKAWRRERLasnmptsppgenaagrpvsgePIRYALPVDDDNAPDLYIPLVAFLTFALVSGYVKGTSGKFTPQVLAQIVSNCALFQVFELALYSIGLYASGA--TIPLLDIAVHTGYKYVALCVNLLFGLVFGLRAYYCSLAYTALAASYYMLKTMAQTVP 392
                 4555566666666653489****************************9976668999**********999876678999*********************************************99***************9887..9***************************************************88775 PP

>> PF04893.12  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.079   5.4e+02     135     162 ..     203     230 ..     166     235 .. 0.79
   2 !   20.5   1.8   3.5e-08   0.00024      17     128 ..     270     404 ..     240     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.079
  PF04893.12 135 laliWslvllylglkaahnlskkkalla 162
                  a++Ws    y+++++ + lsk++all+
   MMETSP0890-20130614|712_1 203 FASFWSKLRSYFAVSHRYTLSKLRALLI 230
                 6778888888888888888888888876 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 3.5e-08
  PF04893.12  17 p..ilrapdlyllllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggllglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgalialllllllgt..................................l 128
                 p    +apdly++l+a+lt++l+  +            +++++t   l+ ++   +l +++ l+l++  l+      g ++ + ++   +gy +++l++ +l++l++ l +++                                   
   MMETSP0890-20130614|712_1 270 PvdDDNAPDLYIPLVAFLTFALVSGYVKG---------TSGKFTPQVLAQIVSNCALFQVFELALYSIGLYA----SGATIPLLDIAVHTGYKYVALCVNLLFGLVFGLRAYYcslaytalaasyymlktmaqtvptkrdpravgpkR 404
                 3667899****************999933.........3455666678888888888889999999999998....88****************************999888866666655555555555555555555555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:01.01
# Mc/sec: 1015.49
//
Query:       MMETSP0890-20130614|719_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-27   94.5  10.1    3.5e-27   94.2   7.0    1.1  1  PF12678.2  RING-H2 zinc finger
    3.3e-15   55.5   7.7    4.7e-15   55.0   5.3    1.2  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
      1e-10   41.0   8.2      1e-10   41.0   5.7    2.1  1  PF13639.1  Ring finger domain
    3.8e-10   39.3   7.5    7.9e-10   38.2   5.2    1.6  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.2e-07   30.3   3.0    5.4e-07   29.0   2.1    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    3.7e-06   26.3   7.5      2e-05   24.0   0.6    2.1  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00093   18.6   2.5     0.0039   16.6   1.2    2.2  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0012   18.2   0.2      0.002   17.4   0.1    1.4  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.021   13.9   0.4      0.021   13.9   0.3    1.7  2  PF04641.7  Replication termination factor 2
      0.024   14.5   6.3      0.024   14.5   4.4    2.3  2  PF12906.2  RING-variant domain
      0.088   12.8   0.2       0.32   11.0   0.0    1.9  2  PF06170.7  Protein of unknown function (DUF983)
       0.75    9.5   3.5        7.9    6.2   0.3    2.1  2  PF06750.8  Bacterial Peptidase A24 N-terminal domain


Domain annotation for each model (and alignments):
>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   7.0     3e-30   3.5e-27       1      75 []      27     104 ..      27     104 .. 0.94

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 3e-30
  PF12678.2   1 kvkikkwnavalwkwdisednCaiCrneleelcpeckapg...ksde.cpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                k++ikkwna+++w+wdi  d+CaiCrn+l+e+ +e +a+    ++ +  ++a+g CgH+FHl+Ci++Wlktr++CPlc+
  MMETSP0890-20130614|719_1  27 KFEIKKWNAICMWSWDICADTCAICRNSLNEPSIEYQANPspnNE-NgLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCN 104
                79*************************************998444.45******************************7 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   5.3   4.1e-18   4.7e-15       2      84 ..      27     110 ..      26     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 4.1e-18
  PF12861.2   2 kvkikevksvatwswdvasddvcGicrvsfdGtcpsck...fpGdd..cplvlGkckhnfhlhcilkwletetskglcpmcrqtfklk 84 
                k +ik++++++ wswd+   d+c icr s +    + +   +p ++   ++ +G c h+fhl ci++wl+t+   + cp+c ++++++
  MMETSP0890-20130614|719_1  27 KFEIKKWNAICMWSWDICA-DTCAICRNSLNEPSIEYQanpSPNNEngLSIAFGCCGHVFHLDCIQRWLKTR---SVCPLCNKEWEFA 110
                789**************97.68********98765544212455442257899****************986...57*******9987 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   5.7     9e-14     1e-10       1      45 [.      46     105 ..      46     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 9e-14
  PF13639.1   1 deCaiCldelse............geevvrl.......pCgHvfHeeCldewlrssnsCPlCrk 45 
                d+CaiC  +l+e            +e            +CgHvfH +C+++wl++++ CPlC k
  MMETSP0890-20130614|719_1  46 DTCAICRNSLNEpsieyqanpspnNE----NglsiafgCCGHVFHLDCIQRWLKTRSVCPLCNK 105
                58********8777777666666633....033334546***********************87 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   5.2     7e-13   7.9e-10       3      46 .]      46     105 ..      44     105 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 7e-13
  PF13923.1   3 fsCpiCleelen.................pviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                ++C iC + l +                  +++ +CgH+++ +Ci++wl++ ++ CP+C++
  MMETSP0890-20130614|719_1  46 DTCAICRNSLNEpsieyqanpspnnenglSIAFGCCGHVFHLDCIQRWLKT-RSVCPLCNK 105
                68********999****************999*******************.*******95 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   2.1   4.7e-10   5.4e-07       1      41 []      48     103 ..      48     103 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 4.7e-10
                 -TTTSSS-SSEE..................BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn.................elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC + + ep+                  +  C+H f+ +Ci+++lk  +   CPlC
   MMETSP0890-20130614|719_1  48 CAICRNSLNEPSieyqanpspnnenglsiAFGCCGHVFHLDCIQRWLK--TRSVCPLC 103
                 ***************************999999***************..5555**** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.6    0.0065       7.4      25      47 ..      36      55 ..      32      58 .. 0.79
   2 !   24.0   0.6   1.7e-08     2e-05      14      46 ..      75     106 ..      67     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0065
  PF13920.1 25 lCeeCaerllkrkkkCpiCrspi 47
               +C + ++ +     +C iCr + 
  MMETSP0890-20130614|719_1 36 ICMWSWDIC---ADTCAICRNSL 55
               688888888...599****9875 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 1.7e-08
  PF13920.1  14 dvlllpCgHlclCeeCaerllkrkkkCpiCrsp 46 
                ++++  CgH+ +  +C +r+lk++  Cp+C+++
  MMETSP0890-20130614|719_1  75 SIAFGCCGHV-FHLDCIQRWLKTRSVCPLCNKE 106
                567778****.*******************987 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.2   3.4e-06    0.0039      26      57 ..      75     101 ..      46     102 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.4e-06
                EEEES.---EEEHHHHHHHHHHHHTTT--B--- CS
  PF13445.1  26 PvvLp.CGhvisrealeklakggrsnkgrfkCP 57 
                ++ +  CGhv+  +++++++k      +r  CP
  MMETSP0890-20130614|719_1  75 SIAFGcCGHVFHLDCIQRWLK------TRSVCP 101
                666666***************......466777 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.8e-06     0.002      11      57 .]      45     104 ..      37     104 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.8e-06
                X-B-TTT-SB-SSEEEES.................----EEEHHHHHHHHTTT--B-------- CS
  PF11789.3  11 slkCpltlkpfkePvtsk.................kCnHvFEkeaIlkmlkrkkkvkCPvaGCs 57 
                  +C + ++ ++eP ++                   C HvF  + I++ l  k++  CP+  C+
  MMETSP0890-20130614|719_1  45 ADTCAICRNSLNEPSIEYqanpspnnenglsiafgCCGHVFHLDCIQRWL--KTRSVCPL--CN 104
                67899*********999889999***********999*************..88899**9..86 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.82   9.3e+02      35      47 ..      46      58 ..      41      64 .. 0.77
   2 ?   13.9   0.3   1.9e-05     0.021     130     164 ..      76     111 ..      67     117 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.82
  PF04641.7 35 klCaLskepLekP 47
                +Ca+ +++L++P
  MMETSP0890-20130614|719_1 46 DTCAICRNSLNEP 58
               5788888888887 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.9e-05
  PF04641.7 130 valrkcGcVfsekalkev.keekvCpvCnkefkeed 164
                +a   cG+Vf    ++   k+ +vCp Cnke++ ++
  MMETSP0890-20130614|719_1  76 IAFGCCGHVFHLDCIQRWlKTRSVCPLCNKEWEFAK 111
                66778******9999876489999******987655 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       5.8   6.6e+03       3       7 ..      36      40 ..      32      47 .. 0.67
   2 ?   14.5   4.4   2.1e-05     0.024       1      47 []      48     103 ..      48     103 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.8
               TTTEE CS
  PF12906.2  3 iClee 7 
               iC+++
  MMETSP0890-20130614|719_1 36 ICMWS 40
               55544 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.1e-05
                ETTTTEE-----...............---------TTS--HHHHHHHHHHHT-SB-S-- CS
  PF12906.2   1 CriCleeeeese.............plirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                C iC+++ +e++              l     C G  +++H +C+++Wlk   ++ C lC
  MMETSP0890-20130614|719_1  48 CAICRNSLNEPSieyqanpspnnenGLSIAFGCCG--HVFHLDCIQRWLK--TRSVCPLC 103
                78888888777777888888888777777788999..9************..34459998 PP

>> PF06170.7  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3         2   2.2e+03       8      18 ..      45      55 ..      42      59 .. 0.82
   2 ?   11.0   0.0   0.00028      0.32       2      28 ..      91     117 ..      90     120 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2
  PF06170.7  8 adaCeaCgldl 18
               ad+C+ C + l
  MMETSP0890-20130614|719_1 45 ADTCAICRNSL 55
               689****9876 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00028
  PF06170.7   2 rgfLkvadaCeaCgldlsharadDgPa 28 
                +++Lk+++ C+ C++++++a+ +  P 
  MMETSP0890-20130614|719_1  91 QRWLKTRSVCPLCNKEWEFAKIERIPG 117
                68*****************99877665 PP

>> PF06750.8  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0069       7.9      42      68 ..      29      55 ..      24      65 .. 0.88
   2 ?    4.5   0.1     0.023        26      29      44 ..      93     108 ..      69     119 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0069
  PF06750.8 42 klkwyeliPvlSylllrGkCryCkaki 68
               ++k ++ i ++S+ +    C+ C++++
  MMETSP0890-20130614|719_1 29 EIKKWNAICMWSWDICADTCAICRNSL 55
               6999*******************9976 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.023
  PF06750.8  29 lllprShCpkCkkklk 44 
                 l+ rS Cp C+k+ +
  MMETSP0890-20130614|719_1  93 WLKTRSVCPLCNKEWE 108
                5678999****98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.88
# Mc/sec: 334.95
//
Query:       MMETSP0890-20130614|722_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0054   16.2   4.8      0.008   15.6   3.3    1.4  1  PF04546.8  Sigma-70, non-essential region
  ------ inclusion threshold ------
      0.012   15.1   0.1       0.02   14.4   0.1    1.3  1  PF09968.4  Uncharacterized protein domain (DUF2202)
      0.081   12.3  10.7       0.14   11.5   7.4    1.3  1  PF03066.10 Nucleoplasmin
       0.17   12.0   9.7       0.31   11.1   6.7    1.5  1  PF09026.5  Centromere protein B dimerisation domain
        0.3   10.4   3.5       0.44    9.9   2.4    1.2  1  PF10972.3  Protein of unknown function (DUF2803)
        0.4    9.2   6.8       0.52    8.8   4.7    1.2  1  PF05797.6  Yeast trans-acting factor (REP1/REP2)
        1.3    6.6  10.4        1.6    6.2   7.2    1.3  1  PF04931.8  DNA polymerase phi
        1.3    6.8   7.8        1.6    6.5   5.4    1.2  1  PF02724.9  CDC45-like protein
        1.6    8.3   8.5        2.5    7.6   5.9    1.3  1  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        3.3    6.7  10.5        5.7    5.9   7.3    1.3  1  PF06524.7  NOA36 protein
        9.3    6.3  12.5         12    5.9   8.3    1.3  1  PF12496.3  Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2


Domain annotation for each model (and alignments):
>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.3   6.5e-06     0.008      44     105 ..     117     180 ..      62     195 .. 0.52

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.5e-06
  PF04546.8  44 eseddeeeeed..dddddededeeeeseeadegpdpeearerFa.elrkqyeklekalekegrks 105
                +s+ d++++++  ddd+d+++de e+++ a  ++ ++++   ++ ++r++ +++++  e+++r +
  MMETSP0890-20130614|722_1 117 QSDNDDNDDNEdiDDDEDDEDDEGEDQTTAYVKAQKPNTTTILEdTIRQLQAEVQQL-ESKQRLH 180
                222222222222323333333333333333333333333333331334333333333.3333333 PP

>> PF09968.4  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.6e-05      0.02      59     115 ..      68     125 ..      58     131 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.6e-05
  PF09968.4  59 eeekvGeFtnqelqelYneLvekgsksledaLkvgaliEdldiaDl.eeaiketdnkd 115
                 +  +G+   +el++lY+++++k + ++  +L+  a++E l+++D+  + +++ dn+d
  MMETSP0890-20130614|722_1  68 DQAVRGVERPRELNDLYDAVIRKDRVEAPPTLMSPATVEILSVNDIlSDQSDNDDNDD 125
                56677888999**********************************9444455555554 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   0.00011      0.14     111     141 ..     116     146 ..     100     154 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
                 .......----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 111 edesldeeddeedeeeeddeedddeeeeeee 141
                 ++++ d++dd+ed+++++d+edd+ e+++  
   MMETSP0890-20130614|722_1 116 DQSDNDDNDDNEDIDDDEDDEDDEGEDQTTA 146
                 3334444555555555555555554444433 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.7   0.00025      0.31      14      41 ..     116     142 ..     103     174 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
  PF09026.5  14 sdseeeeedeeedeededeedeeeddev 41 
                 +s+++++d++ed  d+de+de+++ e 
  MMETSP0890-20130614|722_1 116 DQSDNDDNDDNEDI-DDDEDDEDDEGED 142
                23444444444443.3444444333332 PP

>> PF10972.3  Protein of unknown function (DUF2803)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.4   0.00035      0.44      45     129 ..      95     179 ..      90     181 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00035
  PF10972.3  45 kapeiakrnaidlispdiieqdqtklsaglaiceanleveskeeaaaallsesedaeaadtpyllpssqlqLksianrLersrgy 129
                ++p++ ++++++++s ++i  dq+    ++++ + +++ ++++++ ++ +++ ++a++ +t ++l+++ +qL+ + ++Le+++++
  MMETSP0890-20130614|722_1  95 APPTLMSPATVEILSVNDILSDQSDNDDNDDNEDIDDDEDDEDDEGEDQTTAYVKAQKPNTTTILEDTIRQLQAEVQQLESKQRL 179
                678889999***********************************************************************99876 PP

>> PF05797.6  Yeast trans-acting factor (REP1/REP2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.7   0.00042      0.52     213     286 ..     126     198 ..     106     202 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00042
  PF05797.6 213 qdavedqepledpeleenevqdessasgeqddeaseeseasfwdvleaLeeelesekeqleeieklaayllsnk 286
                ++ + d+e+ ed+e  e +    + a  +++++  e++   +  ++++Le + ++ ++q+++ + +++  l nk
  MMETSP0890-20130614|722_1 126 NEDIDDDEDDEDDE-GEDQTTAYVKAQKPNTTTILEDTIRQLQAEVQQLESKQRLHDKQRRRPTSASVSTLDNK 198
                33677778888888.5666777888999999999999999********************99888877666665 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.2    0.0013       1.6     654     693 ..     107     146 ..     104     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0013
  PF04931.8 654 aleetDddedelkeiedseseseddsEdgeedEkedddea 693
                +l ++D   d++ + +++++e+ dd+Ed+e+dE+ed+  a
  MMETSP0890-20130614|722_1 107 ILSVNDILSDQSDNDDNDDNEDIDDDEDDEDDEGEDQTTA 146
                5666777777777666666666667788888888877655 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.4    0.0013       1.6     123     195 ..     116     185 ..      70     198 .. 0.43

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0013
  PF02724.9 123 alvemkeeee.eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrr 195
                ++++++++++ e+ d+d+d+edde e+++ a      + ++ ++    e+  ++ q + ++ +s+++   ++rr
  MMETSP0890-20130614|722_1 116 DQSDNDDNDDnEDIDDDEDDEDDEGEDQTTAYV----KAQKPNTTTILEDTIRQLQAEVQQLESKQRLHDKQRR 185
                221211111112222222222222222222211....1111111111111111111111111122223333333 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.9     0.002       2.5      10      68 ..     119     176 ..     108     193 .. 0.42

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.002
  PF05320.7  10 yesdddeeeeyeeeeedeedaeslessdvsslkqsdykvesaseeiedaessskqvsek 68 
                +++d+d++e+ +++e+de+d+ + +++   +++++++  + ++++i++ + + +q+ +k
  MMETSP0890-20130614|722_1 119 DNDDNDDNEDIDDDEDDEDDEGEDQTTAYVKAQKPNTT-TILEDTIRQLQAEVQQLESK 176
                22333334445555555444433333333333333333.22333333333333433333 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.3    0.0046       5.7     270     303 ..     115     146 ..     100     157 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0046
  PF06524.7 270 gyesdddeeesaedydeeededddddeeedetse 303
                +++sd+d+++++ed d+  dedd+dde ed+t+ 
  MMETSP0890-20130614|722_1 115 SDQSDNDDNDDNEDIDD--DEDDEDDEGEDQTTA 146
                56777777777777777..555555666666543 PP

>> PF12496.3  Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.3      0.01        12       5      91 ..      91     175 ..      82     186 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.01
  PF12496.3   5 krlvaPelrlsldqldisslsddvsessvddldlslddldtpddedsldvegeleweddtpkagaasesaees....slpqysaeeeards 91 
                 r+ aP   +s  + +i s++d +s++s++  d + d+ d +dded+ d eg    ed+t++  +a++ ++++    +++q +ae ++ +s
  MMETSP0890-20130614|722_1  91 DRVEAPPTLMSPATVEILSVNDILSDQSDN--DDNDDNEDIDDDEDDEDDEG----EDQTTAYVKAQKPNTTTiledTIRQLQAEVQQLES 175
                556666655555777888999999999977..55555557777777666666....56666655555555554333456666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1246  (0.0911352); expected 273.4 (0.02)
Passed bias filter:                      652  (0.0476887); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.78
# Mc/sec: 620.60
//
Query:       MMETSP0890-20130614|728_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.80
# Mc/sec: 796.79
//
Query:       MMETSP0890-20130614|730_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-48  163.3   1.1    1.3e-47  162.0   0.0    2.2  2  PF01207.12 Dihydrouridine synthase (Dus)
     0.0043   16.3   3.0     0.0072   15.5   2.1    1.3  1  PF10422.4  Monopolin complex subunit LRS4


Domain annotation for each model (and alignments):
>> PF01207.12  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.13   8.7e+02     227     270 ..      11      55 ..       3      66 .. 0.55
   2 !  162.0   0.0   1.8e-51   1.3e-47       2     229 ..      70     314 ..      69     379 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.13
  PF01207.12 227 tavktgeaepapplaeeaeivee.hlkkleeelgedkglrkarkh 270
                  +++++e+ ++ +l e+++ v++ + k++ + ++++k ++k  k 
   MMETSP0890-20130614|730_1  11 SRIRNEEKTSKVKLEEKVDEVKKkKKKRTSSSSSQEKEMKKKKKA 55 
                 456666666666666665555440445555555556666555443 PP

  == domain 2    score: 162.0 bits;  conditional E-value: 1.8e-51
  PF01207.12   2 lAPmagvtdlpfRellrevgatdlvvtemvtakaivreekvtirmlseleeetplalQllgsdpallaeaAklvad.lgadeIDlNvGCPakkvtkggaGaaLlr..kpdlvaqivkavvkave.ipvtvkirigiddskenalelarrveaaGaqaltvHgR...traqnyeg....tadweaIkevkqavs.......ipviaNGdikdaedaqailaetGadgvMigrgalgnPwlfaestav 229
                 +APm+g ++l+fR l+r+ g++   +t+m+ +k++v++ k+++  l++ eee+pl++ + ++dp+ +  a +l+ +   +d+IDlN+GCP+  + +g++G+ Ll+  ++dlv +iv+a+++av    v+v ++i+  d+ +++ +l+  + +aGa  +++HgR   t  ++  g    +ad+ +Ik++ ++v+         ++ NG++++  +a ++l+ tGa gvM ++++l+nP+lfa s+++
   MMETSP0890-20130614|730_1  70 IAPMVGGSELAFRILCRRHGSE-VGYTPMLDSKQFVEDAKYREIWLETVEEERPLIVHFSANDPEIMNRACALAFEcASVDGIDLNLGCPQRCAYAGHFGSYLLNeeDRDLVLSIVRAMRQAVPrANVAVCVKIRLLDEFQDTYKLVCQLNDAGAHVVAIHGRkraTWHKRGPGardgPADLHTIKAIVDKVRetrggdsPYIVTNGNVRSKAEAIEALRFTGAAGVMSAEALLNNPSLFADSNQN 314
                 8*********************.*****************************************************99**************************622689*************9978888888888899************************777333332223336**************9866666345889***********************************964443 PP

>> PF10422.4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.1   1.1e-06    0.0072      93     167 ..       7      77 ..       6     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-06
                ------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXX CS
  PF10422.4  93 alleSklsskesevdrfKikLeteesnskvrlqvresklatqdrklrskkksterkslLprvssfkLlSPivgtr 167
                a+ +S++ + e++ +   +kLe +   +k++++ r+s+ ++q+++ + kkk  +   lL r +  k + P+vg  
  MMETSP0890-20130614|730_1   7 AVVQSRIRNEEKTSK---VKLEEKVDEVKKKKKKRTSSSSSQEKEMKKKKKALSYLELLER-GNAKVIAPMVGGS 77 
                789******999876...99******************99999999999888888776665.6779999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1587  (0.116077); expected 273.4 (0.02)
Passed bias filter:                      760  (0.0555881); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.51s 00:00:01.45 Elapsed: 00:00:01.50
# Mc/sec: 733.29
//
Query:       MMETSP0890-20130614|733_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   16.1   1.8     0.0096   15.7   1.3    1.2  1  PF11083.3 Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> PF11083.3  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.3     7e-07    0.0096      30      78 ..      35      83 ..      28      85 .] 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7e-07
  PF11083.3 30 sedvesrklakydfsklNltesitleqvekeikklqeelekeldeYEkl 78
                +  ++ +l  y+  +l + e + + ++   i+k q  ++ ++ +YEkl
  MMETSP0890-20130614|733_1 35 KNVRKQIQLNEYNRIQLEIEEDVDIGKILARIEKYQVAIDVNRRNYEKL 83
               55566779999************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 275.26
//
Query:       MMETSP0890-20130614|729_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.28s 00:00:00.58 Elapsed: 00:00:00.49
# Mc/sec: 332.56
//
Query:       MMETSP0890-20130614|735_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.19   11.6   0.1    1.2  1  PF08002.6 Protein of unknown function (DUF1697)


Domain annotation for each model (and alignments):
>> PF08002.6  Protein of unknown function (DUF1697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.4e-05      0.19      76     124 ..      17      65 ..      12      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
  PF08002.6  76 vrsaeelraivaanPfeeeeeaeekrlhvlflkeeldae.elaeleekke 124
                +r++++l + v++nP ee + +e++++ v fl+e++d+   +++  ++++
  MMETSP0890-20130614|735_1  17 LRQQKTLVRRVEENPQEEVT-KEPTTTPVQFLDENPDQPdIVKKFVKQRS 65 
                689999***********777.****************9956666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.83
# Mc/sec: 482.16
//
Query:       MMETSP0890-20130614|734_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-20   71.2   0.3    1.9e-19   69.5   0.0    1.8  2  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.066     9e+02      82     107 ..      47      72 ..      34      73 .. 0.78
   2 !   69.5   0.0   1.4e-23   1.9e-19      10     159 .]     120     281 ..     112     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.066
  PF00650.15  82 isllkkilkilqdnyPerlkkilivn 107
                 i+ +  i+k++ ++  er+++  i n
   MMETSP0890-20130614|734_1  47 IENADAIMKTFDAVSRERIYRGMITN 72 
                 67778899999999999999988877 PP

  == domain 2    score: 69.5 bits;  conditional E-value: 1.4e-23
  PF00650.15  10 gihgrDkngrpvlylrlgrfdpk...klseeelvrllllvlerllkllee.....dgqiegvtvviDmkglslskmlwkp.isll.kkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpa..tlekyidpeqlpkelGGt 159
                 +i g+D  g+ ++  +lg ++     ++s +e    ++ ++e+++   ++     ++++ + +++iD+  +sl ++ +++ ++ + k i+   +  +Pe++ k++i+naP++f+ ++++v+pf+ ++t+eKik++s+  +       + i+ +q+p+++GG+
   MMETSP0890-20130614|734_1 120 VIGGTDLYGHLIWGEKLGDIKSVvehPVSTDEATAIRMKTMEAIRITQTNisikrGTKRYKQVYIIDLAEVSLGQLMTRSdVRAMtKAIMGAANGFFPETMWKAFIINAPFIFRSVYTMVSPFIHPVTKEKIKILSGPSKYLpeMKANGIPLDQVPENFGGK 281
                 6778899999999888887776666688888888888888888776666688888999*****************99999977665*************************************************65443224366688************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 1015.12
//
Query:       MMETSP0890-20130614|739_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-23   80.5   2.3    1.6e-09   37.8   0.0    3.0  3  PF13637.1  Ankyrin repeats (many copies)
    1.2e-20   73.4   0.1    2.4e-10   40.4   0.1    2.3  2  PF12796.2  Ankyrin repeats (3 copies)
      3e-18   65.3   1.4    7.9e-12   44.8   0.4    2.6  2  PF13857.1  Ankyrin repeats (many copies)
    5.2e-17   60.5   5.6    1.3e-07   30.9   0.1    3.6  4  PF00023.25 Ankyrin repeat
    6.4e-14   50.5   0.2    5.9e-05   22.8   0.0    3.9  4  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.026   13.0   0.0      0.035   12.5   0.0    1.1  1  PF13584.1  Oxygen tolerance
       0.14   10.6   0.1       0.18   10.2   0.1    1.1  1  PF09972.4  Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     2e-09   3.9e-06       6      54 .]     156     204 ..     153     204 .. 0.87
   2 !   37.8   0.0   8.4e-13   1.6e-09       1      54 []     184     238 ..     184     238 .. 0.96
   3 !   28.6   0.1   6.8e-10   1.3e-06       3      47 ..     220     264 ..     219     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2e-09
  PF13637.1   6 hyaaisgr.lelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 +a++ g+  +++++L + g  i+++d++G++aLh+Aa+ g+ e++k Ll
  MMETSP0890-20130614|739_1 156 KRACQRGDiPQVIQWLSAAGN-IDARDADGRSALHYAASSGHSELVKTLL 204
                578888997788999998875.77***********************997 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 8.4e-13
  PF13637.1   1 gltaLhyaaisgrlelvklLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                g++aLhyaa+sg+ elvk Ll e  ++++++d++  ++Lh Aa++g  ++++ Ll
  MMETSP0890-20130614|739_1 184 GRSALHYAASSGHSELVKTLLtEAHASPDALDNFKQSPLHAAAQAGSASAVRTLL 238
                689******************8889************************999887 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 6.8e-10
  PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgni 47 
                ++Lh aa++g   +v+ Ll++g+d+  +d+ G+t+L  A  +gn+
  MMETSP0890-20130614|739_1 220 SPLHAAAQAGSASAVRTLLDNGADVSLRDNAGRTPLNAADDAGNF 264
                69**********************************998666665 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.5e-11   6.8e-08      32      87 ..     157     213 ..     134     215 .. 0.83
   2 !   40.4   0.1   1.2e-13   2.4e-10      20      78 ..     208     270 ..     204     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 3.5e-11
  PF12796.2  32 lAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLl.ekgadvnl 87 
                 A+++g++  v   l+a  +++a+d++g+++Lh+A+++gh elvk Ll e+ a++++
  MMETSP0890-20130614|739_1 157 RACQRGDIPQVIQWLSAAGNIDARDADGRSALHYAASSGHSELVKTLLtEAHASPDA 213
                589999987666666667799***************************555777765 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 1.2e-13
  PF12796.2  20 gadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                 a++d     +++pLh+Aa+ag+  +v+ Ll++gadv  +d+ g+tpL +A  +g++ + +l+
  MMETSP0890-20130614|739_1 208 HASPDAldnfKQSPLHAAAQAGSASAVRTLLDNGADVSLRDNAGRTPLNAADDAGNFGCSRLI 270
                5555554445688**************************************999999987775 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00048       8      36 ..     176     204 ..     171     208 .. 0.85
   2 !   44.8   0.4     4e-15   7.9e-12       5      56 .]     206     258 ..     203     258 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.5e-07
  PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLl 36 
                +++a+d  g+++Lh+Aa+ g++e+v+ Ll
  MMETSP0890-20130614|739_1 176 NIDARDADGRSALHYAASSGHSELVKTLL 204
                6778888888******************9 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 4e-15
  PF13857.1   5 g.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  +a+++a+d+++++pLh Aa +g++++vr Ll++gad  lrd+ g+t+l  A
  MMETSP0890-20130614|739_1 206 EaHASPDALDNFKQSPLHAAAQAGSASAVRTLLDNGADVSLRDNAGRTPLNAA 258
                336***********************************************877 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.32   6.3e+02       9      32 ..     158     181 ..     157     182 .. 0.83
   2 !   30.9   0.1   6.7e-11   1.3e-07       1      33 []     183     216 ..     183     216 .. 0.98
   3 !   29.7   0.1   1.6e-10   3.1e-07       3      33 .]     219     249 ..     218     249 .. 0.96
   4 ?   -2.5   0.0       2.5   4.9e+03       2       6 ..     251     255 ..     251     258 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.32
                 HHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                 A++rg++  v   ls+  +++a+d
   MMETSP0890-20130614|739_1 158 ACQRGDIPQVIQWLSAAGNIDARD 181
                 899998888888888899999998 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.7e-11
                 TSCBHHHHHHHTTHHHHHHHHHH.TTSSTTHBHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd 33 
                 dG+++LH+Aa++g+ e vk Ll  + A+++a d+
   MMETSP0890-20130614|739_1 183 DGRSALHYAASSGHSELVKTLLTeAHASPDALDN 216
                 8******************************997 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 1.6e-10
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 ++PLH Aa+ g+++ v+ Ll++GAd+ ++d+
   MMETSP0890-20130614|739_1 219 QSPLHAAAQAGSASAVRTLLDNGADVSLRDN 249
                 58***************************97 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 2.5
                 SCBHH CS
  PF00023.25   2 GfTPL 6  
                 G+TPL
   MMETSP0890-20130614|739_1 251 GRTPL 255
                 99**9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.31   6.1e+02       9      25 ..     158     175 ..     157     179 .. 0.79
   2 !   22.8   0.0     3e-08   5.9e-05       1      29 [.     183     212 ..     183     213 .. 0.89
   3 !   21.6   0.0     7e-08   0.00014       3      29 ..     219     245 ..     217     246 .. 0.94
   4 ?   -2.2   0.0       3.6   6.9e+03       2       8 ..     251     257 ..     250     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.31
  PF13606.1   9 Aasngr.ielveaLleng 25 
                A+++g  ++++++L  +g
  MMETSP0890-20130614|739_1 158 ACQRGDiPQVIQWLSAAG 175
                999999458****98776 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3e-08
  PF13606.1   1 nGnTpLhlAasngrielveaLl.engadin 29 
                +G+++Lh+Aas+g+ elv+ Ll e++a ++
  MMETSP0890-20130614|739_1 183 DGRSALHYAASSGHSELVKTLLtEAHASPD 212
                79********************56788776 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 7e-08
  PF13606.1   3 nTpLhlAasngrielveaLlengadin 29 
                ++pLh Aa+ g+ ++v+ Ll+ngad++
  MMETSP0890-20130614|739_1 219 QSPLHAAAQAGSASAVRTLLDNGADVS 245
                89***********************96 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 3.6
  PF13606.1   2 GnTpLhl 8  
                G+TpL  
  MMETSP0890-20130614|739_1 251 GRTPLNA 257
                9***975 PP

>> PF13584.1  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05     0.035     389     457 ..      65     129 ..      42     140 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
  PF13584.1 389 asssenkqsvkslgkdiryiktkaelkpikeapffgsalfylllllplllivlllilyrk.krarnadva 457
                ++++  k ++k++ k  + ik+ka+  +++  pf+   + y+l+ ++ll++++l +++r+ +r+++a+ +
  MMETSP0890-20130614|739_1  65 KKKPHVKTKEKKKPKLEKWIKEKASYLEKH--PFS--LAGYILI-CLLLFLYILRLCRRRrRRKTAAKSK 129
                223333444455555556666666665555..775..4566664.4455555555555540444444433 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1     9e-05      0.18     184     274 ..      59     144 ..      20     151 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9e-05
  PF09972.4 184 vhvlfPkgaltppnaneesenllkeiekqekkyareanikaalllillplllvlllllilillliwlkkgrepkkgveiiysfepPedlsP 274
                   +fPk+  + + ++e+++ +l++  k+ + y ++        l++++l+++ll+l il l ++ ++++   k + e   +++p ++l P
  MMETSP0890-20130614|739_1  59 KKKAFPKKKPHVK-TKEKKKPKLEKWIKEKASYLEKH----PFSLAGYILICLLLFLYILRLCRRRRRRKTAAKSKREGFNRWDPRAGLAP 144
                5556777222222.23444445555555555555544....66666666666666666555555555555555555557777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 892.93
//
Query:       MMETSP0890-20130614|736_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31    8.7   1.8       0.42    8.2   1.2    1.1  1  PF05642.6 Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.2   3.1e-05      0.42     251     307 ..     187     243 ..     175     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 3.1e-05
  PF05642.6 251 eeeeenksiepgvGvpGvrvgaatssssttspssstttttpassgpsaqgshgsssr 307
                 ++  n+ ++  + ++Gv++  +++ ++tt+p ++   +t++ss  sa+ ++ +++ 
  MMETSP0890-20130614|736_1 187 GRNFLNRNLSRMIDLAGVQLDPTSAPPTTTAPRTAPRAATSSSSNRSAPSAPAATQA 243
                555668899999********9999999999999998888888888888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.59
# Mc/sec: 1238.79
//
Query:       MMETSP0890-20130614|741_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.027   14.2   0.0    1.6  1  PF04539.11 Sigma-70 region 3
      0.035   14.1   0.6       0.71    9.9   0.6    2.3  2  PF11571.3  Mediator complex subunit 27


Domain annotation for each model (and alignments):
>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     4e-06     0.027      19      61 ..     210     252 ..     196     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4e-06
  PF04539.11  19 RePtpeEiAeelgiseekvrevleaarepvsldlpvgeeedge 61 
                 R Pt+e +A++  i+++++re+   a +p+ ++   ++++++e
   MMETSP0890-20130614|741_1 210 RKPTDEDLAQRHTIEIARLREYQYYAEDPRYFNKYLPSSDNTE 252
                 99*************************9998877777766665 PP

>> PF11571.3  Mediator complex subunit 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6    0.0001      0.71      54      76 ..      32      54 ..      11      61 .. 0.88
   2 ?    1.1   0.0     0.057   3.9e+02      10      50 ..      71     111 ..      62     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0001
  PF11571.3 54 fskpCkkCgkllksaalLPplir 76
               ++++C +C+++l++ + LP++  
  MMETSP0890-20130614|741_1 32 HEQKCSRCKQILPDVLDLPTVAA 54
               5789*********9*****9876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.057
  PF11571.3  10 pseykvfkkltekaetallhflnsrkketalaslldwissY 50 
                + + +++ k++e++e+a+l+ l+++++  ++    + i++Y
  MMETSP0890-20130614|741_1  71 SPKLEFPLKTSESLEEAMLELLSAEEPLGEVLLTPELIWYY 111
                4567888999************9999988888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.79
# Mc/sec: 834.17
//
Query:       MMETSP0890-20130614|743_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 228.58
//
Query:       MMETSP0890-20130614|742_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 224.42
//
Query:       MMETSP0890-20130614|747_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-48  162.8   0.1    3.7e-48  162.5   0.1    1.1  1  PF01592.11 NifU-like N terminal domain


Domain annotation for each model (and alignments):
>> PF01592.11  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.1   2.7e-52   3.7e-48       2     126 ..      41     165 ..      40     166 .. 0.97

  Alignments for each domain:
  == domain 1    score: 162.5 bits;  conditional E-value: 2.7e-52
                 CCHHHHHHHHS-S-----TTSE...-EEEEE-TT---EEEEEEEE-TTT-BEEEEEEEEE--HHHHHHHHHHHHHH---BHHHHHHHHHHHHHHHTT---GCSCCCCH---HHHHHHHCCCCCCHHH CS
  PF01592.11   2 ysdkvldhfknPrnvGvleeada..gvgevgapacGDalrLqlkvdeetdriedakFktfGCgsaiAsssaltelvkgktleeAlkitnkdiaeelgglpkekmhcsvlaeealkaavakYkgkklk 126
                 y+d+v++hf++P nvG+++++d+  g+g vgapacGD+++Lq++vd++ + i ++kFktfGCgsaiAsss++te+v g+++++ ++itnk+ia++l+ lp++k+hcs+lae+a++ a+++Yk+k++k
   MMETSP0890-20130614|747_1  41 YHDEVIRHFEKPSNVGSMDKNDPnvGTGLVGAPACGDVMKLQIRVDDD-GNIIESKFKTFGCGSAIASSSVATEWVRGRNINDDKAITNKEIAAHLN-LPPVKLHCSMLAEDAINSAIEDYKKKRAK 165
                 9**********************999********************97.89999*******************************************.*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.31s 00:00:00.74 Elapsed: 00:00:00.90
# Mc/sec: 468.62
//
Query:       MMETSP0890-20130614|753_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   14.9   0.3      0.014   14.8   0.2    1.0  1  PF12993.2 Domain of unknown function, E. rectale Gene description (DUF3877)


Domain annotation for each model (and alignments):
>> PF12993.2  Domain of unknown function, E. rectale Gene description (DUF3877)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2     1e-06     0.014      73     156 ..      17      96 ..       8     101 .] 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1e-06
  PF12993.2  73 erfCleipeegseyvhentkenefikelielvakhgctleeilelfkkysdnveveevdngefdllirfedesedeyyyCfkde 156
                 r  + + ++g+  v +    + +++el++ ++++++t +e++e+ ++ +     e+  n+++  l   + + ++ yy+C++ e
  MMETSP0890-20130614|753_1  17 RRAIFIMEDRGVPMVMQS--RDGMMEELMDGLMNEDMTQDEVKEFIQATQAAQSGEQSANDDM--LDFIQPGADELYYFCVSCE 96 
                556666777777777654..45689*******************9999988887777777643..33334567778999*9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       898  (0.0656817); expected 273.4 (0.02)
Passed bias filter:                      802  (0.05866); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 322.71
//
Query:       MMETSP0890-20130614|756_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-18   67.0   0.0    1.1e-18   67.0   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    4.1e-07   29.5   0.0    5.3e-05   22.7   0.0    2.1  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.11   12.2   1.4       0.11   12.2   0.9    1.8  2  PF00228.15 Bowman-Birk serine protease inhibitor family


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   2.5e-22   1.1e-18      14      82 ..       2      70 ..       1      77 [] 0.87

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 2.5e-22
  PF13306.1 14 ltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncss 82
               lt++t+p  +t+Ig +aF++c+sl++it+p  lt ig ++F +c sl+++t+p+s+t i + +F +c +
  MMETSP0890-20130614|756_1  2 LTHVTLPAGLTTIGGRAFEGCTSLTQITMPAGLTRIGGSVFRGCVSLSQLTMPDSITDICTDTFDGCPN 70
               789999999999999999999999999999999999999999999999999999999999999999987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.2e-08   5.3e-05       3      56 ..       2      53 ..       1      56 [. 0.94
   2 !    5.6   0.0    0.0027        12      11      26 ..      56      70 ..      51      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.2e-08
  PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               L+++ L    l++i+ +aF+g+++L+ +      l++i   +f g++sL++L +
  MMETSP0890-20130614|756_1  2 LTHVTLPAG-LTTIGGRAFEGCTSLTQITMP-AGLTRIGGSVFRGCVSLSQLTM 53
               788889999.*********************.********************87 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0027
  PF13855.1 11 NrlkvipdgaFkglsn 26
               + +++i++++F g++n
  MMETSP0890-20130614|756_1 56 S-ITDICTDTFDGCPN 70
               4.999*******9997 PP

>> PF00228.15  Bowman-Birk serine protease inhibitor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.51   2.3e+03      20      24 ..      41      45 ..      41      46 .. 0.81
   2 ?   12.2   0.9   2.4e-05      0.11      16      25 .]      60      69 ..      60      69 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.51
                EESS- CS
  PF00228.15 20 vflgC 24
                vf+gC
   MMETSP0890-20130614|756_1 41 VFRGC 45
                79999 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.4e-05
                EEEEEESS-- CS
  PF00228.15 16 vCtDvflgCp 25
                +CtD+f+gCp
   MMETSP0890-20130614|756_1 60 ICTDTFDGCP 69
                6********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.89
# Mc/sec: 207.33
//
Query:       MMETSP0890-20130614|758_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-08   32.4   0.3    8.6e-08   32.0   0.2    1.2  1  PF03874.11 RNA polymerase Rpb4


Domain annotation for each model (and alignments):
>> PF03874.11  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.2   6.3e-12   8.6e-08       1     116 []      25     140 ..      25     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 6.3e-12
                 EE-TTHHHHHHHHCCCHH-HHHCHCHHHHHH....-HHHHCHHHHCCC....C-SS-SCCCHHHHCCCCTTS-........-HHHHHCHHHH--SS..CCCCCCCSTTGTTSS-HHHHHHHHHHHHHHS CS
  PF03874.11   1 aLsnsEvlllLkeeleerknkskkssekeqvkgnlnkilkktleYltk....fsrlkneeevrelveelksfe.......ltkaeklqivnlrPet..avelkalieslekrfsdeqleeiLdelskll 116
                 +Ls+ Ev  lL+ +++++               +++  + kt+eY ++     s  +   e  +l++ l++ +       l + e++ + nl+ ++   +e+kali+sl+ r +de le iL e++k++
   MMETSP0890-20130614|758_1  25 CLSDAEVTMLLE-KRKNEGPD-----------DEMRPLTLKTWEYTKRslgeRSVQDAMHETITLRQALSNPNlvnddhaLYPYEIAALCNLMSKDsePEEAKALIPSLK-RYDDEILENILAEMNKVR 140
                 79**********.77777666...........5899***********999975555556667788999996666677788*************9862268*********9.8*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 447.74
//
Query:       MMETSP0890-20130614|752_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-60  203.7   0.0    7.6e-60  202.1   0.0    1.7  2  PF00069.20 Protein kinase domain
    4.2e-38  130.8   0.0    1.2e-37  129.3   0.0    1.6  2  PF07714.12 Protein tyrosine kinase
    0.00052   18.8   0.4     0.0008   18.2   0.3    1.3  1  PF07387.6  Seadornavirus VP7
     0.0042   16.7   0.1      0.052   13.1   0.1    2.2  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.031   14.5   0.0       0.11   12.8   0.0    1.9  2  PF00786.23 P21-Rho-binding domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.27   7.4e+02     195     231 ..      16      58 ..       5     100 .. 0.63
   2 !  202.1   0.0   2.8e-63   7.6e-60       4     260 .]     134     387 ..     131     387 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.27
                 ---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH......H CS
  PF00069.20 195 gklpfsgeseedqleliekilkkkleedepksssks......e 231
                 g+ p+s+++e++q++  +++ +++ + ++p+  + +       
   MMETSP0890-20130614|752_1  16 GSEPVSNHRETKQQNEAREKIERTFNLESPQNVDMPerwveaM 58 
                 6677887777777777777777777777776655554444441 PP

  == domain 2    score: 202.1 bits;  conditional E-value: 2.8e-63
                 EEEEE----EEEEEEEETTCCE.....EEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   4 leklGsGsfGkVykakkkktgk.....kvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  ++lG+G+fG+V++a+++ + +     +vA+K  + e +++ k+     E+++++ + +Hpn+v+++e+f++k++++l+le+v+g +l +l + k+  + e +i  ++++il++l+++H ++ iHrD K +NiL+d++g++k+aDFGla  l+++  k +++vgt+++mAPE++  ++ y+ +vD+WslG+i++e++ g++p+ +++ +++l li+++  ++l+ +  +s    +++++++ ++l+k+p++R ta ++  hp++
   MMETSP0890-20130614|752_1 134 FHRLGKGGFGRVFSAIDNRKDSdrygqRVALKYCELEYAEDIKK-----EIALHALCsQHPNVVTYYESFMNKRYCILCLEFVNGCTLTALCNpKRPVFAEPDIAYVTRSILCALDFIHGHHRIHRDCKADNILVDSNGNVKLADFGLATALTRTTMKRNSVVGTPYWMAPELVI-CDSYDCAVDIWSLGIICIEMAQGEPPLLQKTATRALFLIASNPAPSLKDKDIWS----ADFRNILASMLDKNPDTRATASQLRDHPFF 387
                 678***********99887766677779*********9999887.....********89**************************99999999778888****************************************************9***********************.********************************************9999998888....89**************************98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.49   1.3e+03     198     238 ..      12      58 ..       5      69 .. 0.59
   2 !  129.3   0.0   4.3e-41   1.2e-37       5     256 ..     135     382 ..     131     384 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.49
                 HHTTT-GTTTTS....HHHHHHHHHHTT-BS---TT..SBHHHHHHH CS
  PF07714.12 198 iftlgespypgl....sneevlellkegkrlekpek..cpeelyelm 238
                 ++ +g++p+++     +++e+ e+++++ +le p++  +pe++ e m
   MMETSP0890-20130614|752_1  12 MIRRGSEPVSNHretkQQNEAREKIERTFNLESPQNvdMPERWVEAM 58 
                 56667777555421124555777777777777776522455565555 PP

  == domain 2    score: 129.3 bits;  conditional E-value: 4.3e-41
                 EEE-------EEEEEEET.TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHT..T-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12   5 kklGeGafGkVvegtlkg.ekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellke..gkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                 ++lG+G fG+V++++ ++ ++++  ++Va+K ++ +++    e++ +e+++   + +hpn+v+++  +++++ +++ +e+v+g +L  + + k ++ +   d+  ++  i  ++++++ ++ +Hrd  a N+L++++  vk++DfGLa  +  + ++ k+++      WmapE++   ++  + D+Ws G+++ E+++ ge p  + +++++l l+ +     l+ ++ +++++ +++ + ++++p+ R t ++l+
   MMETSP0890-20130614|752_1 135 HRLGKGGFGRVFSAIDNRkDSDRYGQRVALKYCELEYA----EDIKKEIALHALCsQHPNVVTYYESFMNKRYCILCLEFVNGCTLTALCNPK-RPVFAEPDIAYVTRSILCALDFIHGHHRIHRDCKADNILVDSNGNVKLADFGLATAL--TRTTMKRNSVVGTPYWMAPELVICDSYDCAVDIWSLGIICIEMAQ-GEPPLLQKTATRALFLIASnpAPSLKDKDIWSADFRNILASMLDKNPDTRATASQLR 382
                 58*************99867778899*******55554....56999999999999*************999999*******99999988888.*********************************************************..667778888889999****************************99.99**99999999999995511456899999**********************99986 PP

>> PF07387.6  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   2.9e-07    0.0008     151     188 ..     240     275 ..     147     290 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.9e-07
  PF07387.6 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvDPv 188
                l +L  +h   ++ +h Dc+ +n++ D+nG++kl D +
  MMETSP0890-20130614|752_1 240 LCALDFIH--GHHRIHRDCKADNILVDSNGNVKLADFG 275
                44677777..5678********************9964 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.16   4.3e+02      21      84 ..     159     218 ..     150     244 .. 0.79
   2 !   13.1   0.1   1.9e-05     0.052     168     196 ..     251     278 ..     243     280 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.16
                 ..TEEEEEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
  PF01636.18  21 g.ryvlrrarparaaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler 84 
                 g r++l+ +  + +ae++++e al +l +++    P v+ + ++   +++    le+v g +l+ 
   MMETSP0890-20130614|752_1 159 GqRVALKYCELE-YAEDIKKEIALHALCSQH----PNVVTYYESFMNKRYCILCLEFVNGCTLTA 218
                 348899999999.***********9999999....566776788888888888888888877766 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.9e-05
                 EB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 168 llHgDlhpgNllvdpddgrvgviDfedag 196
                  +H+D++ +N+lvd+++++  + Df++a+
   MMETSP0890-20130614|752_1 251 RIHRDCKADNILVDSNGNVK-LADFGLAT 278
                 69************777777.99999997 PP

>> PF00786.23  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.9e-05      0.11      23      57 ..      47      81 ..      39      83 .. 0.86
   2 ?   -3.1   0.0       3.8     1e+04      21      45 ..     386     410 ..     385     411 .] 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-05
                EE---HHHCCCH-XX.XXXXXXXXXXXXXXXXXXX CS
  PF00786.23 23 ftglppewkkllkssgissdeqkknpkavlsvvkf 57
                ++++p+ w +++ ++g++++e +++pk++l++ +f
   MMETSP0890-20130614|752_1 47 NVDMPERWVEAMRAAGVTKQEFQRDPKSALDAIRF 81
                459**************************998666 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.8
                 TBEE---HHHCCCH-XX.XXXXXXX CS
  PF00786.23  21 gfftglppewkkllkssgissdeqk 45 
                 +f+++ p+e+   l +s ++s+e k
   MMETSP0890-20130614|752_1 386 FFLNAIPQEQFGSLVRSVLRSNETK 410
                 5677899999988888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.66
# Mc/sec: 1492.28
//
Query:       MMETSP0890-20130614|760_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-23   79.4   0.0      4e-15   55.0   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    9.9e-17   60.2   0.2    2.7e-09   36.4   0.1    1.9  2  PF13414.1  TPR repeat
    4.6e-16   58.4   0.0    2.7e-15   55.9   0.0    1.8  1  PF13424.1  Tetratricopeptide repeat
    1.9e-12   46.0   0.7    1.2e-07   30.8   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    7.2e-10   37.8   0.0    2.4e-07   29.9   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.1e-09   37.3   0.1    4.4e-05   22.9   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.8e-07   30.3   0.3     0.0003   20.2   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
    4.9e-07   29.3   0.1      3e-06   26.8   0.1    2.2  2  PF13431.1  Tetratricopeptide repeat
    2.3e-05   24.8   0.0    4.7e-05   23.8   0.0    1.5  1  PF13432.1  Tetratricopeptide repeat
      4e-05   23.7   0.0     0.0044   17.4   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00072   19.7   0.0      0.046   14.0   0.0    2.1  2  PF13174.1  Tetratricopeptide repeat
    0.00097   19.1   0.0     0.0011   18.9   0.0    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.015   14.1   0.0      0.019   13.8   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25
      0.057   11.5   0.0      0.061   11.4   0.0    1.0  1  PF10345.4  Cohesin loading factor
      0.075   12.8   0.0       0.22   11.3   0.0    1.8  1  PF04212.13 MIT (microtubule interacting and transport) domain
      0.082   13.2   0.0       0.17   12.2   0.0    1.5  1  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.8e-08   4.9e-05      18      42 .]       1      25 [.       1      25 [. 0.97
   2 !   55.0   0.0   4.7e-18     4e-15       1      42 []      26      67 ..      26      67 .. 0.96

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 5.8e-08
  PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
               y+eA +l+++a +i ++ +G++HP+
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDEKTYGPNHPY 25
               89**********************6 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 4.7e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               ++ +lnnLA +lr++g+y+eA ++ e++ +i+++++G++HP+
  MMETSP0890-20130614|760_1 26 VSESLNNLAELLRNQGKYDEAIPICERVIEIWEKVHGPNHPQ 67
               678**************************************5 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   3.1e-12   2.7e-09      19      67 ..       1      56 [.       1      58 [. 0.93
   2 !   27.2   0.0   2.3e-09     2e-06       3      38 ..      27      67 ..      25      68 .] 0.90

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.1e-12
  PF13414.1 19 ydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               ydeA  ++++A+e+d     pn++     ++nlA +++++g +y+eA+  +e+++e+
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDektygPNHPYvseSLNNLAELLRNQG-KYDEAIPICERVIEI 56
               9*************98888899987888*************.6***********997 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 2.3e-09
  PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae 38
               +e+l++l++ l ++g+ydeAi  +e+ +e++     pn+++
  MMETSP0890-20130614|760_1 27 SESLNNLAELLRNQGKYDEAIPICERVIEIWekvhgPNHPQ 67
               689***************************87777788886 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   3.2e-18   2.7e-15      21      78 .]       1      59 [.       1      59 [. 0.98

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 3.2e-18
  PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
               ydeA  l+++a+e+  +++g++hp +  +lnnla+l++ +g+ydeA++  e+++ei ek
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIdEKTYGPNHPYVSESLNNLAELLRNQGKYDEAIPICERVIEIWEK 59
               9******************************************************9876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   3.3e-05     0.028      17      32 ..       1      16 [.       1      17 [. 0.94
   2 !   30.8   0.0   1.4e-10   1.2e-07       2      31 ..      28      57 ..      27      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.3e-05
                HHHHHHHHHHHHHHHT CS
  PF00515.23 17 ydeAleyyekALelnP 32
                ydeA   +++A+e+++
   MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDE 16
                9*************97 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 1.4e-10
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALeln 31
                ++l+nl+ +++++gkydeA+  +e+++e+ 
   MMETSP0890-20130614|760_1 28 ESLNNLAELLRNQGKYDEAIPICERVIEIW 57
                789*************************95 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011       9.2      15      34 ..       1      20 [.       1      23 [. 0.81
   2 !   29.9   0.0   2.8e-10   2.4e-07       1      31 [.      29      59 ..      29      64 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.011
  PF13176.1 15 yekAielyeraLaltkdpld 34
               y++A  l++ra+++++  ++
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDEKTYG 20
               89********8888876665 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 2.8e-10
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
               +l+nLa+l +++g+y++Ai ++er +++++ 
  MMETSP0890-20130614|760_1 29 SLNNLAELLRNQGKYDEAIPICERVIEIWEK 59
               79**********************8887765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   9.6e-05     0.082      17      32 ..       1      16 [.       1      18 [. 0.93
   2 !   22.9   0.0   5.1e-08   4.4e-05       2      30 ..      28      56 ..      27      56 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.6e-05
                HHHHHHHHHHHHHH-T CS
  PF07719.12 17 yeeAleafekAleldP 32
                y+eA+ +f++A+e+d 
   MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDE 16
                9*************97 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 5.1e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                e l+nl+++++++g+y+eA+  +e+++e+
   MMETSP0890-20130614|760_1 28 ESLNNLAELLRNQGKYDEAIPICERVIEI 56
                789**********************9986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0018       1.6      17      32 ..       1      16 [.       1      19 [. 0.90
   2 !   20.2   0.0   3.5e-07    0.0003       2      30 ..      28      56 ..      27      56 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0018
               HHHHHHHHH---HHHH CS
  PF13181.1 17 ydkAkeylekalelkp 32
               yd+Ak  +++a+e++ 
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDE 16
               9*************97 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 3.5e-07
               --TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
               ++++nl++++r+ G+yd+A+   e+++e+
  MMETSP0890-20130614|760_1 28 ESLNNLAELLRNQGKYDEAIPICERVIEI 56
               5799**********************997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   3.5e-09     3e-06       1      33 [.       7      47 ..       7      48 .. 0.91
   2 ?   -0.9   0.0       2.6   2.3e+03       2       9 ..      50      57 ..      49      68 .] 0.66

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 3.5e-09
  PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
               l+++a+e+d     Pn+   ++++nnLAell n+G+++eA+
  MMETSP0890-20130614|760_1  7 LFQRAIEIDektygPNHpyvSESLNNLAELLRNQGKYDEAI 47
               699*****988888777999********************7 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.6
  PF13431.1  2 yekaleld 9 
               +e+ +e+ 
  MMETSP0890-20130614|760_1 50 CERVIEIW 57
               78888875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.5e-08   4.7e-05      13      58 ..       1      54 [.       1      66 [. 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 5.5e-08
  PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58
               ydeA +++++a++ +        P   e l +lae+l  +g++deA+   ++ +
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDektygpnhPYVSESLNNLAELLRNQGKYDEAIPICERVI 54
               89*************9**9988888**********************8888776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.054        46      17      32 ..       1      16 [.       1      23 [. 0.88
   2 !   17.4   0.0   5.2e-06    0.0044       4      30 ..      30      56 ..      27      68 .] 0.79

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.054
  PF13428.1 17 pdeAiallrralalaP 32
               +deA  l++ra++ + 
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDE 16
               69**********9876 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 5.2e-06
  PF13428.1  4 llalarallalGdpdeAiallrralal 30
               l  la++l+++G +deAi  ++r+++ 
  MMETSP0890-20130614|760_1 30 LNNLAELLRNQGKYDEAIPICERVIEI 56
               5679********************983 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.11        90      16      28 ..       1      13 [.       1      15 [. 0.90
   2 !   14.0   0.0   5.3e-05     0.046       5      28 ..      32      55 ..      29      57 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.11
               HHHHHHHHHHHHH CS
  PF13174.1 16 tdeAlealerlik 28
               +deA+ +++r i+
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIE 13
               79********997 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.3e-05
               HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  5 klalsyyklgdtdeAlealerlik 28
               +la++++++g++deA+ + er+i+
  MMETSP0890-20130614|760_1 32 NLAELLRNQGKYDEAIPICERVIE 55
               79********************97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-06    0.0011       5      51 ..       1      55 [.       1      67 [. 0.77

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.3e-06
               HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC..T CS
  PF12895.2  5 yknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk..l 51
               y++A  l++++++ + k      p  +++l +lA+ l ++g+y++A+ ++++  +
  MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDEKtygpnHPyVSESLNNLAELLRNQGKYDEAIPICERviE 55
               788999999999999887776423656678888****************987652 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.019      35      76 ..      22      63 ..      21      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
  PF04910.9 35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhp 76
               ++PY  ++L +l+e++r+qg++ +A  ++er + i e+v  p
  MMETSP0890-20130614|760_1 22 NHPYVSESLNNLAELLRNQGKYDEAIPICERVIEIWEKVHGP 63
               69*****************************99888887666 PP

>> PF10345.4  Cohesin loading factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.2e-05     0.061      77     132 ..       1      59 [.       1      66 [. 0.94

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.2e-05
  PF10345.4  77 ideAetylskailiaeknrledlkfscqfLl..arllektnpka.Alkslneliedaet 132
                +deA+  +++ai i ek+   +  +++++L+  a ll++++++  A+  + ++ie  e+
  MMETSP0890-20130614|760_1   1 YDEAKPLFQRAIEIDEKTYGPNHPYVSESLNnlAELLRNQGKYDeAIPICERVIEIWEK 59 
                799**************99999********************************99876 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.22       2      25 ..       1      47 [.       1      60 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00025
                HHHHHHHHHHHHHHHHTT.......................-HHHHH CS
  PF04212.13  2 lskAlelikkAveaDeag.......................kyeeAl 25
                +++A++l+++A+e+De+                        ky+eA+
   MMETSP0890-20130614|760_1  1 YDEAKPLFQRAIEIDEKTygpnhpyvseslnnlaellrnqgKYDEAI 47
                579*************9767777777777776666666666666665 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.17       5      25 ..      31      51 ..      28      52 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0002
               ---HHHHHH-------HHHHH CS
  PF07721.9  5 laLArallalGdldeAralle 25
                +LA++l  +G +deA  + e
  MMETSP0890-20130614|760_1 31 NNLAELLRNQGKYDEAIPICE 51
               69**************76665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 250.70
//
Query:       MMETSP0890-20130614|762_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-19   67.1   0.4    1.9e-09   36.9   0.0    2.2  2  PF00400.27 WD domain, G-beta repeat
     0.0038   15.3   2.4       0.14   10.1   0.6    2.0  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.017   14.7   0.3      0.038   13.5   0.2    1.5  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   4.1e-13   1.9e-09       1      39 []       9      47 ..       9      47 .. 0.93
   2 !   28.6   0.1   1.7e-10   7.8e-07       5      32 ..      54      81 ..      51      82 .] 0.94

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 4.1e-13
                TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                gec++tl++  s+V+ va+sp+  + la+g  D ++r+W+
   MMETSP0890-20130614|762_1  9 GECLKTLEHN-STVYTVAWSPSnKTQLATGANDDKVRIWN 47
                5788888888.****************************7 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 1.7e-10
                EEEESSSSSEEEEEEESSSTEEEEEETT CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrD 32
                ++l gH+s+Vt++a+s+dg  l+s+S+D
   MMETSP0890-20130614|762_1 54 RELVGHESWVTSIAYSQDGITLVSASKD 81
                6799***********************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1   0.00043         2     244     278 ..       2      31 ..       1      39 [. 0.70
   2 !   10.1   0.6   3.1e-05      0.14     231     284 ..      31      75 ..      23      81 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00043
  PF11715.3 244 RvWnletgqclrttdileaaellpadslsyipeps 278
                ++Wn+++g cl+t + +      + ++++++p+++
  MMETSP0890-20130614|762_1   2 KIWNISNGECLKTLEHN-----STVYTVAWSPSNK 31 
                8*********9999888.....3334444444443 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.1e-05
  PF11715.3 231 qtfvftlsrDgkLRvWnletgqclrttdileaaellpadslsyipepsesslir 284
                +t ++t   D k+R+Wn++t  c         +el   +s   ++++s++  + 
  MMETSP0890-20130614|762_1  31 KTQLATGANDDKVRIWNTDTSEC---------RELVGHESWVTSIAYSQDGITL 75 
                6666677789*************.........6777777888888888665554 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   8.3e-06     0.038      52     116 ..      11      76 ..       3      81 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.3e-06
  PF08662.6  52 evvelkkegpihdvaWspkskefaviyGkmpakislfdlkvnvisklkekkr..Ntifwspqgrlvl 116
                +  +l+++  ++ vaWsp++k   +  G  + k+++++ + +   +l  ++    +i +s+ g  ++
  MMETSP0890-20130614|762_1  11 CLKTLEHNSTVYTVAWSPSNKT-QLATGANDDKVRIWNTDTSECRELVGHESwvTSIAYSQDGITLV 76 
                4555666666777777775543.45567777777777776665555543332113455555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:01.15
# Mc/sec: 169.40
//
Query:       MMETSP0890-20130614|757_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-41  140.9   0.2      3e-41  140.2   0.1    1.4  1  PF00861.17 Ribosomal L18p/L5e family
      1e-29  102.7   4.3      1e-29  102.7   3.0    2.0  2  PF14204.1  Ribosomal L18 C-terminal region
  ------ inclusion threshold ------
          1    9.2   6.7        2.6    7.9   4.7    1.6  1  PF14442.1  N-terminal domain of Bd3614-like deaminases
        3.2    6.2   8.3        4.8    5.6   5.8    1.2  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> PF00861.17  Ribosomal L18p/L5e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.1   8.9e-45     3e-41       1     119 []      26     182 ..      26     182 .. 0.96

  Alignments for each domain:
  == domain 1    score: 140.2 bits;  conditional E-value: 8.9e-45
                 --HCCCTCHHHCCCCCCCCTSSS-CEEEEEESSCEEEEEEE-SS---EEEECCCSCCCTT----TT--SHHHHHH---HCCCHHHH........---..............................-EEE----------HCHHHHHHHCC---B- CS
  PF00861.17   1 kktrrrarkrlvvqrknkgttekpRLvVrrsnkhiyaQiiddtkegdlvlasalskelkkyglkvgltntaaAklvGlllAkralk........kgi..............................avlvfdlggttyggrvfalakgareaGLki 119
                 +kt++rarkrl++q+knk++t+k+R+vVr+sn+++++Qii+++  gd v+++a skel +yglkvgl+n aaA+++GlllA+r+l+        +g+                              a l+++ ++tt+g+rvfa++kga ++GL+i
   MMETSP0890-20130614|757_1  26 GKTDYRARKRLITQDKNKYNTPKYRFVVRFSNRYVTCQIIAAEVVGDKVICAATSKELGRYGLKVGLKNFAAAYCTGLLLARRLLQkldldeiyEGQaeidgeiistevgkktyfvdeldddkrpfrALLDVGVRTTTTGNRVFAALKGATDGGLDI 182
                 599***********************************************************************************88887777555888999999999999*******************************************97 PP

>> PF14204.1  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       2.4   8.3e+03      76      88 ..      22      34 ..       7      49 .. 0.49
   2 !  102.7   3.0     3e-33     1e-29       1      94 []     201     294 ..     201     294 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.4
  PF14204.1 76 rlkkkkltleerk 88
               r ++ k ++  rk
  MMETSP0890-20130614|757_1 22 RRREGKTDYRARK 34
               3333333333333 PP

  == domain 2    score: 102.7 bits;  conditional E-value: 3e-33
  PF14204.1   1 aevhrkrIfgkhvaeYmkeLkeedeekYkkqFskYikkgieaddleelykkahaaIradPsrkkkekkekkkeskrlkkkkltleerkervkek 94 
                ae+ ++rIfg+hv+eYm++L++ed+ kY++ F++Yik+gie+d le+ly+++h+aIr+dPs+++ke+ e++ +++  k+ kl++eerk+++++k
  MMETSP0890-20130614|757_1 201 AEAMKDRIFGTHVSEYMEKLMDEDNAKYQQLFAEYIKEGIEPDGLEDLYTSVHEAIREDPSPAEKEEFEVEDRESFKKTPKLSYEERKAKIAAK 294
                7999**********************************************************999999999999999**************986 PP

>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.7   0.00075       2.6      82     114 ..     289     321 ..     268     330 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00075
  PF14442.1  82 vKvaAkrvtaldlradddgaaasarasdddddd 114
                 K+aAk++  +++++ddd++  ++ +++ d+d+
  MMETSP0890-20130614|757_1 289 AKIAAKKAADMEVDDDDDDDEEEEDDDEKDQDE 321
                59********99998888877755444444433 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.8    0.0014       4.8     383     438 ..     263     320 ..     203     327 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0014
  PF07267.6 383 dlsaesslpdkdd..easslaptekrkRr.rvrklqelssdeeedssdeeevDkekerk 438
                   +e +++d+++  ++ +l   e+rk +  ++k  +++ d+++d+++eee D+ek++ 
  MMETSP0890-20130614|757_1 263 AEKEEFEVEDRESfkKTPKLS-YEERKAKiAAKKAADMEVDDDDDDDEEEEDDDEKDQD 320
                233444445444410444444.4444444145667788888888666666666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1180  (0.0863078); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:01.14
# Mc/sec: 700.15
//
Query:       MMETSP0890-20130614|764_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-12   47.0   0.0    2.1e-12   46.6   0.0    1.2  1  PF01722.13 BolA-like protein


Domain annotation for each model (and alignments):
>> PF01722.13  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.5e-16   2.1e-12       2      73 ..      33      98 ..      31     100 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.5e-16
                HHHHH-SE.EEEEE--.........---EEEEEE-GGGTT--HHHHHHHHHHHHHHHGGG.-S-EEEEEE-HH CS
  PF01722.13  2 leaalapeelevedeshkHaghag.eshfkvvivSeaFegksrvkRhrlVyalLkeelkegiHALslktytpe 73
                l+ al+ + + ved+s      +g +s + + + S++F+g++++k+h lV ++L++e+++ +H  +++t+ p+
   MMETSP0890-20130614|764_1 33 LTLALEATDVRVEDKS------GGcGSFYAIMVESPKFAGLTTLKQHMLVKSTLADEMAQ-VHGATVETRVPK 98
                8889************......679**********************************9.********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.99
# Mc/sec: 244.48
//
Query:       MMETSP0890-20130614|768_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.2e-123  411.4  10.9   4.8e-123  411.2   7.5    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.098   12.2   0.2       0.35   10.4   0.1    1.9  1  PF07577.6  Domain of Unknown Function (DUF1547)


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.2   7.5    7e-127  4.8e-123       1     487 [.      39     543 ..      39     544 .. 0.93

  Alignments for each domain:
  == domain 1    score: 411.2 bits;  conditional E-value: 7e-127
  PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpv....akllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAvkiieeeaeldvgnigvikieggsl.edseli..eGvvldkgylsp....dmpkrl...enpkillldcsleteketktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrv...........kkedlerlakltgatavsrl.....esleeedlGkakkveeeeigedkttlieg......................est............lsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeaks.lsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkgenlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiikak 487
                 lad+v+ tLGPkGrn ++ ++ g++ it+dg+t++k++e+++++    a+l++++a+++++ +GDGttta++L++++++e+ k ++ag++p++++rg+ +a e+++++L+k+s+++s++  ee+++va++s+ns+      +++++l+ dA+        ++vg++gvi++++g++ e +el+  eG+ +d+gy sp    d++ ++   enp+ill++++ +t ++                       + plle +v+s+++l+iia++++ eal++L+ n+++a  +v           +ke l++la ltg+ ++s++     e+ +ee lG akkv   ++++d+t++++g                                     lsg+va+i+++ga+eve+ e+++++ dal+a++aa++ +g+vpGGG a+l +s++L e +++ ++ ++++g+ei+++Al+a+ kt+a+Nag ++  v+ kl++  +++  +g++a+t e++d+++agi+Dp+kv+++al  a +vasl++t +++i + 
   MMETSP0890-20130614|768_1  39 LADAVSCTLGPKGRNAVIDQSFGAPRITKDGVTVAKNIEFKDRFmnmgAQLVRQVANKTNDVAGDGTTTATVLTRAIFSEGCKSVAAGLNPMDLRRGILMASEAVVESLTKLSKPISTK--EEIAQVATISANSE------REVGELISDAM--------EKVGKEGVITVNDGKTlE-NELEvvEGMKFDRGYISPyfitDTKAQVfdvENPYILLVEKKVSTIQS-----------------------IVPLLETVVKSQRPLIIIAEDVESEALATLVVNKLRAGIKVcavkapgfgdnRKETLQDLAVLTGGAVISEDvglklENATEEHLGVAKKV---TVSKDDTIVLNGagnrsdvedrcelireliakskS-EyekeklqerlakLSGGVAVIKVGGASEVEVAEKKDRVVDALNATRAAVE-DGIVPGGGRALLWASTQLDEIKNKaVNMDQRIGVEIVQRALRAPTKTIAQNAGDEGAVVVGKLLE--ESNPAIGYNAQTAEYVDMFAAGIIDPAKVVKTALLDAQSVASLMMTAEAFIADA 543
                 79******************999**********************************************************************************************99..**************......***********........****************64.488778**************98444444678*****************.......................************************************************************************996555555555*******...*********99988877777666666666665550.0555566666777*************************************.******************55444469999************************************..8889***********************************************986 PP

>> PF07577.6  Domain of Unknown Function (DUF1547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.1e-05      0.35      25      52 ..     171     198 ..     161     202 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.1e-05
  PF07577.6  25 nqnLGdvikdvengtgkgtivapkdqae 52 
                + ++G++i+d  +++gk+++++ +d+++
  MMETSP0890-20130614|768_1 171 EREVGELISDAMEKVGKEGVITVNDGKT 198
                789*******************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.40s 00:00:01.34 Elapsed: 00:00:01.00
# Mc/sec: 1363.53
//
Query:       MMETSP0890-20130614|781_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-30  103.2   0.0    7.6e-30  103.1   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    3.9e-13   48.8   0.1    1.5e-05   24.4   0.0    2.2  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.072   12.4  11.8        2.9    7.2   0.3    4.6  5  PF01744.15 GLTT repeat (6 copies)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   1.7e-33   7.6e-30       1      92 [.       6      97 ..       1      99 [] 0.64

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 1.7e-33
  PF13306.1  1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipssl 92
               t+Ig ++F++c++lt++t+p  +++Ig++aF+nc+sl+++t+p  lt+ig +aF++c+slt++t+p  lt+ig naF++c+sl+++++p  l
  MMETSP0890-20130614|781_1  6 TTIGVSTFRGCTSLTQLTLPAGLITIGNHAFCNCTSLTQLTMPAGLTTIGINAFEECTSLTQLTLPAGLTTIGINAFYGCTSLTQLTLPVGL 97
               45666666666666666666666666666666666666666666666666666666666666666666666666666666666666666554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.4e-09   1.5e-05      13      56 ..       5      47 ..       4      49 .. 0.96
   2 !   22.6   0.0   1.3e-08   5.9e-05      13      56 ..      51      93 ..      47      94 .. 0.96

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.4e-09
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l++i+ ++F g+++L+ L L    l++i  +af +++sL++L +
  MMETSP0890-20130614|781_1  5 LTTIGVSTFRGCTSLTQLTLP-AGLITIGNHAFCNCTSLTQLTM 47
               899******************.*******************986 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.3e-08
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l++i+ +aF+ +++L+ L L    l++i  +af g++sL++L L
  MMETSP0890-20130614|781_1 51 LTTIGINAFEECTSLTQLTLP-AGLTTIGINAFYGCTSLTQLTL 93
               899999***************.********************98 PP

>> PF01744.15  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3   0.00065       2.9       6      14 ..       4      12 ..       2      13 .. 0.49
   2 ?    0.5   0.0     0.081   3.7e+02      11      16 ..      27      32 ..      25      32 .. 0.46
   3 ?    4.7   0.0    0.0041        19      16      22 ..      50      56 ..      48      58 .. 0.63
   4 ?    4.7   0.0    0.0041        19      16      22 ..      73      79 ..      71      81 .. 0.63
   5 ?   -3.3   0.0       1.2   5.7e+03       6       8 ..      96      98 ..      94      98 .. 0.40

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00065
  PF01744.15  6 GLaTlGLvT 14
                GL+T+G+ T
   MMETSP0890-20130614|781_1  4 GLTTIGVST 12
                555555443 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.081
  PF01744.15 11 GLvTmG 16
                GL+T+G
   MMETSP0890-20130614|781_1 27 GLITIG 32
                444433 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0041
  PF01744.15 16 GLtTlGL 22
                GLtT+G+
   MMETSP0890-20130614|781_1 50 GLTTIGI 56
                5555555 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0041
  PF01744.15 16 GLtTlGL 22
                GLtT+G+
   MMETSP0890-20130614|781_1 73 GLTTIGI 79
                5555555 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 1.2
  PF01744.15  6 GLa 8 
                GL+
   MMETSP0890-20130614|781_1 96 GLT 98
                332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 320.59
//
Query:       MMETSP0890-20130614|775_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.7   1.4     0.0078   15.9   0.1    3.0  4  PF10363.4  Protein of unknown function (DUF2435)
  ------ inclusion threshold ------
       0.11   12.0   0.4       0.29   10.6   0.2    1.8  2  PF09316.5  C-myb, C-terminal
        5.6    6.8   6.5        2.1    8.2   0.1    3.2  3  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF10363.4  Protein of unknown function (DUF2435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.27   1.2e+03      67      87 ..      78      98 ..      67     102 .. 0.81
   2 ?   -3.2   0.0       1.6   7.2e+03      63      85 ..     166     187 ..     165     194 .. 0.77
   3 !   15.9   0.1   1.7e-06    0.0078      20      81 ..     227     286 ..     211     296 .. 0.87
   4 ?   -2.0   0.0      0.68   3.1e+03      65      65 ..     355     355 ..     304     382 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.27
  PF10363.4 67 kgLaalaevdpeevlktLvee 87
               k+ + l++  +++v+k+L+e 
  MMETSP0890-20130614|775_1 78 KCTKLLCQSATKDVIKSLIEP 98
               677789999999999999875 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.6
  PF10363.4  63 LnaikgLaalaevdpeevlktLv 85 
                   i+ La+ +++d++  l++Lv
  MMETSP0890-20130614|775_1 166 GDLIQHLATACSWDHD-PLSRLV 187
                5679999999999887.666665 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.7e-06
  PF10363.4  20 vrahgLllLrrlvekksaedvadvpkilelllsqlkdedsfvYLnaikgLaalaevdpeevl 81 
                +  h+L+ L++lv   + ++++d+ ++l l ls l+d++++ +++a +++a la+ +++evl
  MMETSP0890-20130614|775_1 227 TSEHALAALAELVIGAD-TALQDTSRLLALTLSRLSDDNQY-HVAALRAVARLAKANKTEVL 286
                5569**********999.9*********************9.8***************9998 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.68
  PF10363.4  65 a 65 
                a
  MMETSP0890-20130614|775_1 355 A 355
                1 PP

>> PF09316.5  C-myb, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.2   5.4e+03      43      65 ..      19      41 ..       5      45 .. 0.60
   2 ?   10.6   0.2   6.4e-05      0.29      60     100 ..     410     453 ..     394     454 .] 0.73

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.2
  PF09316.5 43 tpkkqkenslfrTPnirrsiles 65
                      +++++ P++ rs+l  
  MMETSP0890-20130614|775_1 19 EREAAASKESLVNPHVARSALRI 41
               33455567788889999988875 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 6.4e-05
  PF09316.5  60 rsilestPrTPTPFknaLaa...qekkygplkllpqtpssleed 100
                r ++++  +TPTPF  a a         gp +++ ++ s+l+ d
  MMETSP0890-20130614|775_1 410 RLLVAVANKTPTPFNAATATlitSLINQGPFRPTTRPASFLVAD 453
                56678889******99876511145689*******999999876 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00045       2.1       5      37 ..      88     119 ..      84     123 .. 0.82
   2 ?    0.5   0.1      0.11   5.2e+02      13      40 ..     210     239 ..     198     240 .. 0.78
   3 ?   -1.5   0.1       0.5   2.3e+03      21      40 ..     257     278 ..     251     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00045
                 HHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHH CS
  PF00514.18   5 kqavieaGavppLvqLLksgdeevqeeAawALs 37 
                 ++ vi++  ++p  + + s+d +v+e+A+ +  
   MMETSP0890-20130614|775_1  88 TKDVIKS-LIEPVAKAILSDDVGVCEAACDTAA 119
                 5667777.79*******************9855 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
  PF00514.18  13 avppLvqLLk..sgdeevqeeAawALsNLa 40 
                  ++pL++  +   +   + e A++AL +L 
   MMETSP0890-20130614|775_1 210 LLEPLLSIAQdtEDPFATSEHALAALAELV 239
                 577788888888888899999*****9985 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.5
                 HC..-SSHHHHHHHHHHHHHHH CS
  PF00514.18  21 Lk..sgdeevqeeAawALsNLa 40 
                 L+  s+d +   +A++A+  La
   MMETSP0890-20130614|775_1 257 LSrlSDDNQYHVAALRAVARLA 278
                 3467889999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.44s 00:00:01.15 Elapsed: 00:00:01.30
# Mc/sec: 836.88
//
Query:       MMETSP0890-20130614|782_1  [L=1049]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-19   68.9   1.3    7.3e-19   67.8   0.3    2.0  2  PF12695.2  Alpha/beta hydrolase family
    1.5e-15   57.6   6.2      3e-15   56.6   4.3    1.5  1  PF12697.2  Alpha/beta hydrolase family
    1.7e-12   47.2   0.0      4e-12   46.0   0.0    1.5  1  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
    8.5e-10   38.0   0.0     0.0003   19.9   0.0    2.3  2  PF00326.16 Prolyl oligopeptidase family
    1.1e-06   28.3   0.5    2.9e-06   26.8   0.4    1.7  1  PF00561.15 alpha/beta hydrolase fold
     0.0015   18.2   0.0      0.026   14.2   0.0    2.4  2  PF12146.3  Putative lysophospholipase
     0.0063   15.8   0.1      0.012   14.9   0.0    1.4  1  PF00756.15 Putative esterase
  ------ inclusion threshold ------
      0.091   11.9   0.1        8.8    5.4   0.0    2.4  2  PF01738.13 Dienelactone hydrolase family
       0.12   11.9   0.0       0.65    9.5   0.0    2.3  2  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.3   4.8e-22   7.3e-19       2     135 ..     734     954 ..     733     960 .. 0.85
   2 ?   -2.1   0.0       1.7   2.7e+03      11      46 ..     984    1019 ..     982    1036 .. 0.75

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 4.8e-22
  PF12695.2   2 vvlvhGaggdssayeplaealakrgfavvavdlpghgasegaa.........aakrvlaadll...dleriilvGhSlGGgvalelagrd.drvkglvllapf..............pdgedlakltl......................................................................pvllihGtrDgvvppeeaeklakalpgdaelvv 135
                vv+vhG+++++ +  +l + la  g+a  a+d  g+g+s g+          ++ +v+ +d      ++ri+++G+S+G+++al++a+ + + v+++v+ +p+                                                                                               pvl++hG++D++v p+++++l++a +gda++ +
  MMETSP0890-20130614|782_1 734 VVYVHGNACSRLGSLSLLRPLALGGVALCALDCAGSGNSGGEFvslghyerdDVCAVV-DDMRkrqLVGRIAIWGRSMGAATALLYASTRdPYVAAVVADSPYsslvelcrelvakaR---------TssrnqqqrgstntsdaspqdaqspgrnlflgaiteaalalvrssvrhragfdihdvspiahvanmrhsatPVLFMHGANDDFVAPTHSSRLHHAHGGDATIKL 954
                9**************************************6655556666666888888.5444555789*******************887***********8777666555554430.........134444455677777777888899*************************************************************************9998765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.7
  PF12695.2   11 dssayeplaealakrgfavvavdlpghgasegaaaa 46  
                 d+  y+ l ++la++g+  v+  ++ + +s++++ a
  MMETSP0890-20130614|782_1  984 DRPRYNALLNKLADDGYLGVRDHNQQSKNSTSTPSA 1019
                 66789999********98887666666666666644 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   4.3   1.9e-18     3e-15       1     215 [.     734     959 ..     734     962 .. 0.69

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.9e-18
                EEE------------HHHHHHT.TTSEEEEE-----------S...S--HHHH.HHHHHHHHHH--.....--EEEE--------HHHHHH----.EEEEEEE------STT..........---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG...........------HHHHTT--S-EEEEE-----HHHHHHHHHHHHH.STTEEEEE---SSS CS
  PF12697.2   1 vvllHGlggsaeswrplaeaLa.agyrvvapDlpGhGrSdrppdydpdtledl.aadlaalldalgl....rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas..........alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa...........lldadlrealarldvPvlviageaDrvvppeearrlaea.lpgarvvvlpgagH 215
                vv +HG+  s     +l++ La  g+   a+D  G G+S +       +l  +  +d++a++d ++     +++ ++G S+G+a+al++a+ r   v+++v+ +p  +l +             r + ++   ++  + ++ ++   ++ f  ++++    alvr+           +            ++    +++++  +Pvl+++g++D++v+p +  rl  a +++a+++ l+ ++H
  MMETSP0890-20130614|782_1 734 VVYVHGNACSRLGSLSLLRPLAlGGVALCALDCAGSGNSGGEF----VSLGHYeRDDVCAVVDDMRKrqlvGRIAIWGRSMGAATALLYASTRDPYVAAVVADSPYSSLVELcrelvakartSSRNQQQRGSTNTSDASPQDAQSPGRNLFLGAITE-AALALVRS-----------SvrhragfdihdVSPIAHVANMRHSATPVLFMHGANDDFVAPTHSSRLHHAhGGDATIKLLA-CDH 959
                799******************978****************965....3443221479*******99999999********************999************87776776665544422222222222222233333333333333333322.22233333...........22222444432223333346666669***************777777765427899999998.998 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   2.6e-15     4e-12      21     254 ..     694     947 ..     686     959 .. 0.75

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 2.6e-15
                 EEEEEEESS-.TTH.HHHHHCTCHHCCH...HH...........................HHC---EEEEEE----TT------TTTCCHHHHHHHHHHHHHHCTTBE-EEEE---TT---HHHHHTTS--TTB-EBEEBSB-SBCHHIHCB----BBHHHHHHHCCHHCHHHCCTCCCGSTTCHHHHHHHHHHCCHHHHHHHSTT.THHHHCCCC--SSSHHHHTTBHGGGH..HG--SEEEEEE--B-SSS-.HHHHHHHHHHC CS
  PF02129.13  21 PvlltrtpYn.ksdelaatlasalgekelqdka...........................fvarGYavVvvdvrGtgaSeGeftvgsedevedgadvidWlakqpwsnGkVGmtGiSYdGttqlaaaatgvpalkaivpesaisdlydeyyregGlvrapggltwedldllaealesrradegdalkaaaryeaagdellkkqdre.tkvlselletgdydafwkernlseda..dkvkvpvllvsGwnDwnvk.rgviklyealk 254
                 Pv+++r  +   +++  + + s++   ++++++                           ++  G a    d+ G+g+S Gef++ +  e +d+++v+d  +k     G+++++G S ++ t+l+ a+t++p ++a+v+ s+ s+l++ + re  lv++ ++ +         ++++r + +  ++  +++    ++  l++  ++   + + ++++ +  ++ +   + + a  +   +pvl+++G nD+ v+  ++ +l++a  
   MMETSP0890-20130614|782_1 694 PVVVHRDDFTvSNERGLEVKYSLWLPRQSSKEVkqdlppcvvyvhgnacsrlgslsllrpLALGGVALCALDCAGSGNSGGEFVSLGHYERDDVCAVVDDMRKR-QLVGRIAIWGRSMGAATALLYASTRDPYVAAVVADSPYSSLVE-LCRE--LVAKARTSSR--------NQQQRGSTNTSDASPQDAQSPGRNLFLGAITEAaLALVRSSVRHRAGFDIHDVSPIAHVAnmRHSATPVLFMHGANDDFVApTHSSRLHHAHG 947
                 888888888875555666666555433333333688999999999999999999999999999************************************88775.567****************************************.6555..5666555454........333333333333333333233333333333333233556668888888888888888655668999***********9998888888877765 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07    0.0003      11     121 ..     755     856 ..     747     882 .. 0.79
   2 !   15.7   0.0   3.9e-06    0.0059     130     168 ..     905     944 ..     895     949 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.9e-07
                 HH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-..---GGGGT--- CS
  PF00326.16  11 adrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsllteaeymeygn 121
                 a  G++ ++ +  Gsg+ G ++       lg +e dD+ a+++ + k+++v   r+ai+G S G  +++  +  r    +a+va ++ + ++    +  l ++a++    +
   MMETSP0890-20130614|782_1 755 ALGGVALCALDCAGSGNSGGEFVS-----LGHYERDDVCAVVDDMRKRQLV--GRIAIWGRSMGAATALLYASTRDPYVAAVVADSPYSSLVELCRE--LVAKARTSSRNQ 856
                 56799999**************99.....99999**************988..69******************888888999999999888877555..344444444443 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 3.9e-06
                 HHHHHH-GGG---.----EEEEEETT-SSS-THHHHHHHH CS
  PF00326.16 130 eelspyspadnvk.aypplllihGeeDdrvppaealklva 168
                 +++sp+++++n++   +p+l++hG +Dd v p ++ +l +
   MMETSP0890-20130614|782_1 905 HDVSPIAHVANMRhSATPVLFMHGANDDFVAPTHSSRLHH 944
                 6899*******99*********************999865 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.4   1.9e-09   2.9e-06       4      80 ..     762     846 ..     760     945 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.9e-09
                 EEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--.........H CS
  PF00561.15   4 iglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtva.........v 80 
                 ++lD  G+g S    +  l hy  dd+++ ++  +++  + +++++G SmG+++al ya+    +v+a+v++++           v
   MMETSP0890-20130614|782_1 762 CALDCAGSGNSGG-EFVSLGHYERDDVCAVVDDMRKRQLVGRIAIWGRSMGAATALLYASTRDPYVAAVVADSPYSslvelcrelV 846
                 789999*****95.38**********************************************************434444444442 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05     0.026      15      74 ..     730     794 ..     709     796 .. 0.69
   2 ?    1.0   0.0      0.23   3.5e+02       9      44 ..     962    1000 ..     955    1004 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
  PF12146.3  15 pkaavvlvhglaEhsgrYqelaedLaaqGyavyayDhrGhGksegerghvpsfd.....dyvdDl 74 
                   +vv+vhg a +      l + La  G+a +a+D  G G+s+ge   + +++     ++vdD+
  MMETSP0890-20130614|782_1 730 LPPCVVYVHGNACSRLGSLSLLRPLALGGVALCALDCAGSGNSGGEFVSLGHYErddvcAVVDDM 794
                4568*******988888999************************965544444311122556665 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.23
  PF12146.3    9 wlpeep.pkaavvlvhglaEhsg..rYqelaedLaaqGy 44  
                   p+++  +a+++l  +la +s   rY+ l ++La+ Gy
  MMETSP0890-20130614|782_1  962 ARPATAiIDACLFLYDRLAPTSDrpRYNALLNKLADDGY 1000
                 56667778889999999998898446************9 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.1e-06     0.012     105     154 ..     790     843 ..     767     936 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.1e-06
                 HHHHHH-B----.EEEE--THHHHHHHHHHHH-TTT-SEEEEES----TT...C CS
  PF00756.15 105 lldanfrtapdg.ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps...n 154
                 ++d+ ++ +  g  a++G SmG+ +AL++a+++    + v + Sp+ +++    
   MMETSP0890-20130614|782_1 790 VVDDMRKRQLVGrIAIWGRSMGAATALLYASTRDPYVAAVVADSPYSSLVelcR 843
                 555555555555689*******************9**********976655552 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.018        27      91     127 ..     796     831 ..     781     852 .. 0.84
   2 ?    5.4   0.0    0.0058       8.8     133     171 ..     908     946 ..     884     960 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.018
  PF01738.13  91 slpevstkkvgvvGfClGGalalllAaen.pevdaava 127
                 +  ++ ++++++ G  +G+a all+A+   p+v a+va
   MMETSP0890-20130614|782_1 796 K--RQLVGRIAIWGRSMGAATALLYASTRdPYVAAVVA 831
                 3..34789******************998799998885 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0058
  PF01738.13 133 tlekpleeaakikapilahlgeeDpfipaeaaedleeal 171
                 ++  ++++ +   +p+l+++g +D+f+   + ++l+ a 
   MMETSP0890-20130614|782_1 908 SPIAHVANMRHSATPVLFMHGANDDFVAPTHSSRLHHAH 946
                 667789999999***************999988887765 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.3   3.5e+03      47     107 ..     519     582 ..     507     592 .. 0.65
   2 ?    9.5   0.0   0.00043      0.65      22      55 ..     801     835 ..     791     944 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.3
                --EEEE----------EEETTE..EE------GGG-EE..-----EE.-TT-S--------STT CS
  PF08840.6  47 savvlingsavvvegkllykeeskvlpelkesleklkv..nenglld.ildtlallksklaeka 107
                + +v  ng  +  ++   y+  ++++  l+ + ++ ++  + ++l++ ++ ++a++ksk+++++
  MMETSP0890-20130614|782_1 519 TPLVGTNGVGMLRADGISYEGPERPFVALDSERRTNTKkqQRDKLVRrYRGVVAERKSKEDNES 582
                5567888888888888888888788888877666655533344444313446677777776664 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00043
                -----B------HHHHHHHHHSS.S---EEEE--- CS
  PF08840.6  22 dkigllGiSkGgelalllasflk.kisavvlings 55 
                 +i++ G+S G+++all as+ +  + avv+ ++ 
  MMETSP0890-20130614|782_1 801 GRIAIWGRSMGAATALLYASTRDpYVAAVVADSPY 835
                48******************999899999987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.38u 0.61s 00:00:01.98 Elapsed: 00:00:01.18
# Mc/sec: 2130.32
//
Query:       MMETSP0890-20130614|785_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:01.14
# Mc/sec: 135.45
//
Query:       MMETSP0890-20130614|788_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-21   75.7   1.9    9.4e-10   37.9   0.1    2.5  3  PF00400.27 WD domain, G-beta repeat
    1.4e-07   30.0   0.9    0.00052   18.2   0.1    2.0  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.019   13.6   0.2      0.031   12.9   0.1    1.4  2  PF08801.6  Nup133 N terminal like
      0.022   13.5   0.1       0.57    8.8   0.0    2.0  2  PF07433.6  Protein of unknown function (DUF1513)
      0.039   11.0   0.0      0.043   10.9   0.0    1.0  1  PF00747.12 ssDNA binding protein
       0.09   12.1   0.1       0.22   10.8   0.0    1.5  1  PF13360.1  PQQ-like domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.1e-13   9.4e-10      10      39 .]      10      39 ..       3      39 .. 0.94
   2 !   37.3   0.0   6.3e-13   1.4e-09       2      39 .]      44      81 ..      43      81 .. 0.95
   3 ?   -3.2   0.0       3.7   8.4e+03      16      21 ..     101     106 ..      96     107 .. 0.65

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.1e-13
                SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 10 HtspVtcvafspdgpllasgSrDgtirlWd 39
                H++ V+++afs + +l+++++ D t+r+Wd
   MMETSP0890-20130614|788_1 10 HEDYVRSCAFSSNDKLIVTACQDQTVRIWD 39
                99***************************9 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 6.3e-13
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++ +tl+gHt  V   +fs dg++++++SrD+t r+Wd
   MMETSP0890-20130614|788_1 44 QLERTLYGHTERVANSCFSADGNRIITASRDHTARIWD 81
                6779*********************************9 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.7
                 EEEEES CS
  PF00400.27  16 cvafsp 21 
                 +++f p
   MMETSP0890-20130614|788_1 101 SCDFTP 106
                 566655 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.3e-07   0.00052     220     257 ..      16      49 ..       6      63 .. 0.79
   2 !   11.4   0.0   2.5e-05     0.058     227     253 ..      62      87 ..      51      96 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.3e-07
  PF11715.3 220 sldvsssevegqtfvftlsrDgkLRvWnletgqclrtt 257
                s    ++  +++ +++t ++D+++R+W++  gq+ rt 
  MMETSP0890-20130614|788_1  16 S----CAFSSNDKLIVTACQDQTVRIWDTQSGQLERTL 49 
                3....445559999******************995554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.5e-05
  PF11715.3 227 evegqtfvftlsrDgkLRvWnletgqc 253
                  +g+ ++ t srD++ R+W+   g  
  MMETSP0890-20130614|788_1  62 SADGNRII-TASRDHTARIWDAQSGIV 87 
                44666666.************988766 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.4e-05     0.031     190     261 ..      12      82 ..       2      85 .. 0.78
   2 ?    1.8   0.0     0.033        75     201     229 ..      64      91 ..      48      97 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.4e-05
  PF08801.6 190 teivqlridssrrilytlsskgtirvwdlspsgeslksevdirenlltilqesikksaatilsskslkildi 261
                + + + + +s  ++++t+  + t+r+wd++ sg+  +  +   e+++++ ++++ + + t +++++++i+d 
  MMETSP0890-20130614|788_1  12 DYVRSCAFSSNDKLIVTACQDQTVRIWDTQ-SGQLERTLYGHTERVANSCFSADGNRIITASRDHTARIWDA 82 
                446666667777*****************9.55556777999999999999999888856666788888886 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.033
  PF08801.6 201 r.rilytlsskgtirvwdlspsgeslksev 229
                  + ++t+s+++t r+wd +  + +++se+
  MMETSP0890-20130614|788_1  64 DgNRIITASRDHTARIWDAQ--SGIVLSEF 91 
                35789*************96..44455555 PP

>> PF07433.6  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00025      0.57     216     252 ..      11      46 ..       5      52 .. 0.85
   2 ?    2.2   0.0     0.027        61     223     254 ..      60      90 ..      52      97 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00025
  PF07433.6 216 agYigsvavdsdgelvavtsPrgntvaiwdaatgell 252
                ++Y+ s a++s+++l+ vt+ + +tv iwd+++g+l 
  MMETSP0890-20130614|788_1  11 EDYVRSCAFSSNDKLI-VTACQDQTVRIWDTQSGQLE 46 
                68*******9998776.99999***********9986 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.027
  PF07433.6 223 avdsdgelvavtsPrgntvaiwdaatgellee 254
                ++++dg+ + +t+ r +t+ iwda++g +l+e
  MMETSP0890-20130614|788_1  60 CFSADGNRI-ITASRDHTARIWDAQSGIVLSE 90 
                566666666.7788888888888888877765 PP

>> PF00747.12  ssDNA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.9e-05     0.043     348     436 ..      13     109 ..       7     110 .] 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.9e-05
                 ----TTT-TT-TTT--EEEE----------..........S--TTSEEEE----STTS-EE-----B-----------------HHHHH----HHHH CS
  PF00747.12 348 hvaalvFsaNSvLYltkvdkltsakkkdnsn........sqesllrsilfanglvaanedvdrdgrklikfegavgkdeeyslehLalacgfspqLl 436
                  v    Fs+N  L +t  +++t      +s+          e + +s + a+g        d+ +r   +++g+v ++ ++  ++La+ c f p+ +
   MMETSP0890-20130614|788_1  13 YVRSCAFSSNDKLIVTACQDQTVRIWDTQSGqlertlygHTERVANSCFSADGNRIITASRDHTARIWDAQSGIVLSEFKFNRSYLAFSCDFTPHFF 109
                 5777889999999999999988766666555421112223344444444455555555666777888889999*********************986 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.7e-05      0.22       2      66 ..      32      95 ..      31      99 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.7e-05
  PF13360.1  2 egvvsaldaatGkelWrv..dlkpalgggvseavldggtlfvasakgrlvaldaatGkvlWsksleg 66
               +++v+ +d+++G++  +   +  ++  +  +    dg+++++as++ +   +da++G vl ++++++
  MMETSP0890-20130614|788_1 32 DQTVRIWDTQSGQLERTLygH--TERVANSCFSA-DGNRIITASRDHTARIWDAQSGIVLSEFKFNR 95
               678888887666555555432..33333333356.*************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.55
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|790_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.25   11.4   3.3        1.8    8.6   0.4    2.8  2  PF00672.20 HAMP domain
       0.28   11.1   2.7       0.55   10.2   0.8    1.9  2  PF13993.1  YccJ-like protein


Domain annotation for each model (and alignments):
>> PF00672.20  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.02   1.3e+02      29      40 ..       9      20 ..       1      28 [. 0.74
   2 ?    8.6   0.4   0.00027       1.8      29      43 ..      29      43 ..      24      56 .] 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.02
                HHHHHHHHHH-- CS
  PF00672.20 29 rLaeaarriaeG 40
                ++a+ a++ia+G
   MMETSP0890-20130614|790_1  9 EIADGATKIADG 20
                567778888877 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00027
                HHHHHHHHHH---TT CS
  PF00672.20 29 rLaeaarriaeGdld 43
                ++a+aa++ia+Gd +
   MMETSP0890-20130614|790_1 29 EIADAATEIADGDTE 43
                799*********983 PP

>> PF13993.1  YccJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.021   1.4e+02      14      31 ..       6      23 ..       1      28 [. 0.50
   2 ?   10.2   0.8   8.1e-05      0.55       9      34 ..      21      46 ..      13      54 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.021
  PF13993.1 14 tsveiaeaifelakddek 31
                 +eia+    +a+   k
  MMETSP0890-20130614|790_1  6 GDTEIADGATKIADGATK 23
               334555555555555555 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.1e-05
  PF13993.1  9 akvretsveiaeaifelakddeklae 34
               a+    + eia+a  e+a+ d ++a+
  MMETSP0890-20130614|790_1 21 ATKIADAAEIADAATEIADGDTEIAD 46
               55555567788888888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 223.66
//
Query:       MMETSP0890-20130614|791_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   85.9   0.0    1.9e-24   85.4   0.0    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
     0.0001   22.1   0.0    0.00017   21.4   0.0    1.3  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
  ------ inclusion threshold ------
       0.13   11.7   2.2        1.1    8.7   0.9    2.3  2  PF13555.1  P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   4.2e-28   1.9e-24       1      75 []      22      95 ..      22      95 .. 0.98

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 4.2e-28
  PF00125.19  1 ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75
                +s++++l++pv+R+ r lk+g ya  r++a a+v+l+++le+l +eile+Ag++a+++k+ +i pr++qlAvr+d
   MMETSP0890-20130614|791_1 22 KSAKAGLQFPVGRIGRFLKQGKYAT-RVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAVRND 95
                5899********************7.***********************************************97 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.7e-08   0.00017       2      65 .]      29      92 ..      28      92 .. 0.98

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.7e-08
                ---HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18  2 eLPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65
                ++P  r+ + +k+ + a ++   A++++a ++e    e+++ A   + ++k+  i + +++lav
   MMETSP0890-20130614|791_1 29 QFPVGRIGRFLKQGKYATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAV 92
                69************************************************************98 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.9   0.00023       1.1      30      42 ..      12      24 ..       4      40 .. 0.85
   2 ?    1.5   0.0     0.042   1.9e+02      43      61 ..     116     135 ..     112     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00023
  PF13555.1 30 GasGsGKSTllDA 42
               G++GsGKST   A
  MMETSP0890-20130614|791_1 12 GKTGSGKSTTKSA 24
               9********8655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.042
  PF13555.1  43 iqtlLvpak.kvafNkaana 61 
                i ++L+p+k k +  ka+++
  MMETSP0890-20130614|791_1 116 IHAVLLPKKsKSKTTKASGS 135
                679******99999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.31s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 493.58
//
Query:       MMETSP0890-20130614|789_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-20   70.7  11.9    1.3e-19   70.3   8.2    1.2  1  PF01040.13 UbiA prenyltransferase family
  ------ inclusion threshold ------
      0.076   13.0   1.0        1.6    8.7   0.0    2.6  2  PF11118.3  Protein of unknown function (DUF2627)


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   8.2   1.9e-23   1.3e-19      17     229 ..      69     311 ..      51     340 .. 0.70

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 1.9e-23
  PF01040.13  17 ggrldl...lllllllllllllqaavnvlNdyfDyeiDrdnkrkpeRPlpsGrisprealllglallllgllla.....lllgplllllallglll...gllYs.pplrlkrrgllgelvvglafgllillgaaavggdi....................plpllllalllfllalallltndirDvegDraaGirtlpvrlgrkatlyalllaaalla.....tallllllaplllllavalaalallr 229
                 +g+ +l   +   + lll +++++ +  +Ndy+D++ D++  +kp+RP+psG+ s+++ l+++l+  ll+ +++       +  +++++a++++ +   ++lYs    ++  r+l++e v+g    l+ ++g +++  ++                      p++ +a+ ++ + + +l+t d+ D++gD+a G+ t+pv lg+ a  + + l+a +l+     ++  ++++   ++ l++  +a+++ +
   MMETSP0890-20130614|789_1  69 QGYEPLslfRGVMRGLLLSIFYIMHADWYNDYCDVDVDAK--NKPSRPMPSGKCSKSQGLAIALLYPLLATGVLtsiyvTSSFNVFFAYAIAYWGCvlsAFLYSdN--KFPTRTLWRETVMGR---LVSFCGIYCTYDFMlyaetadalnfdpfdtnsklFKPFFAYAFSNLWFHVGMLITKDMGDIDGDKADGLMTIPVALGSNAKSIGASLIAFSLMritriYFNIFGYFCSDYYGLPLSKIAIGIDI 311
                 33333311345555566666677777888***********..*******************999999999776666997666688888888866555547****72..555555556666665...4444444443333345555566688899**99998888888899888888999999********************888888644444444446888866666666666666666666666555 PP

>> PF11118.3  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.032   2.2e+02      29      65 ..      56      95 ..      53     101 .. 0.79
   2 ?    8.7   0.0   0.00023       1.6      28      64 ..     168     204 ..     152     208 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.032
  PF11118.3 29 fgillsPfsalvlqflaGlllf...alGlallaGfilyRd 65
               ++++l P + l++q+   l lf   + Gl l   +i++ d
  MMETSP0890-20130614|789_1 56 ILKTLGPVALLTVQGYEPLSLFrgvMRGLLLSIFYIMHAD 95
               6778899********9999998333458888888888877 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00023
  PF11118.3  28 vfgillsPfsalvlqflaGlllfalGlallaGfilyR 64 
                ++   ++P ++l+   ++G l+   G++ +  f+ly 
  MMETSP0890-20130614|789_1 168 LYSDNKFPTRTLWRETVMGRLVSFCGIYCTYDFMLYA 204
                6677899****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.77
# Mc/sec: 1117.26
//
Query:       MMETSP0890-20130614|792_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.96
# Mc/sec: 491.75
//
Query:       MMETSP0890-20130614|805_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-16   58.4   0.0    3.8e-10   39.1   0.0    3.1  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.013   13.5   0.4      0.022   12.8   0.1    1.5  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00067       4.6      24      37 ..       4      17 ..       2      19 .. 0.90
   2 !   39.1   0.0   5.6e-14   3.8e-10       6      39 .]      27      60 ..      24      60 .. 0.97
   3 !    9.1   0.0   0.00016       1.1       3      32 ..      66      96 .]      64      96 .] 0.92

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00067
                TEEEEEETTSEEEE CS
  PF00400.27 24 pllasgSrDgtirl 37
                + la+g  D+ +r+
   MMETSP0890-20130614|805_1  4 TQLATGANDNIVRI 17
                579**********8 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 5.6e-14
                EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +l+gH++ ++++a++ dg  l+s+S D+t+rlWd
   MMETSP0890-20130614|805_1 27 ELEGHEDEINSIAYALDGLTLVSASNDHTCRLWD 60
                699******************************9 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00016
                EEEEEESSSSSEEEEEEESS.STEEEEEETT CS
  PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrD 32
                +++++rg t+ V+ v  sp+ g+++a  ++D
   MMETSP0890-20130614|805_1 66 QLRIFRGATAEVCHVVSSPNdGTVFAAVGED 96
                5799****************99999999988 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.059   4.1e+02     239     254 ..      11      26 ..       2      45 .. 0.76
   2 ?   12.8   0.1   3.2e-06     0.022     233     279 ..      47      86 ..      33      94 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.059
  PF11715.3 239 rDgkLRvWnletgqcl 254
                 D+ +R+ n++t  c+
  MMETSP0890-20130614|805_1  11 NDNIVRILNTDTSDCV 26 
                5888999999999993 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.2e-06
  PF11715.3 233 fvftlsrDgkLRvWnletgqclrttdileaaellpadslsyipepse 279
                + ++ s D++ R+W+++++++lr    +      +a+ + ++++p++
  MMETSP0890-20130614|805_1  47 L-VSASNDHTCRLWDVTNRAQLRIFRGA------TAEVCHVVSSPND 86 
                4.499****************8887777......5555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.32s 00:00:00.69 Elapsed: 00:00:01.03
# Mc/sec: 223.35
//
Query:       MMETSP0890-20130614|804_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-17   63.1   0.0    3.6e-17   62.3   0.0    1.5  1  PF13359.1 DDE superfamily endonuclease
     0.0015   17.8   0.3       0.73    9.0   0.1    2.2  2  PF04827.9 Plant transposon protein


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   5.3e-21   3.6e-17      16     153 .]     110     242 ..      94     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 5.3e-21
  PF13359.1  16 eqaqtysgykkhntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklk..q..pgdvvlaDrgfplsdkllvpykkkkqlseeeeefnrrlasarihvervigrlKgrfkilkgrlrikklekldkivlvccvLhN 153
                + +  y  +k ++ l ++++vd+d +iif++ + + s++D+ +++++ l +++   +  +  ++++D++f +++++++p         ++++fn+ l+++r+  e+++g + +r+ il ++l+ +  ++ ++++ +c+ LhN
  MMETSP0890-20130614|804_1 110 NPNRYYCARKEKHALLLMAIVDADRRIIFYDISCTPSTHDSLAWDSTPLAQRFAagDlcERFFIFGDSAFVCTRSMITPG--------NDTNFNYFLSELRVNSECAFGEMIRRWGILWRPLEME-FSRRADVIACCIRLHN 242
                3556788889999***************************************8876255789************888888........699******************9999************.99*************9 PP

>> PF04827.9  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00042       2.9      23     104 ..      86     169 ..      65     183 .. 0.75
   2 !    9.0   0.1   0.00011      0.73     153     199 ..     201     246 ..     177     252 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00042
  PF04827.9  23 gfpgmlgsld.cmhwkwkncptawk..gqytrgdkksptiileavasydlwiwhaffglpgsnndinvldrsplfadilkGeapr 104
                 + g +g++d c+ w+ kn  +a +   +y   +k++ +++l a+ + d  i    ++++ s  d    d +pl +  + G+  +
  MMETSP0890-20130614|804_1  86 MITGCVGAIDgCLLWQ-KNPGIAVHnpNRYYCARKEKHALLLMAIVDADRRIIFYDISCTPSTHDSLAWDSTPLAQRFAAGDLCE 169
                4567899999788887.566666652257888999999**************999999999999999999999988888887655 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00011
  PF04827.9 153 arkdverafGvlqarfkivakparlwekedlakimkaciilhnmive 199
                 r + e+afG +  r+ i+ +p ++ e +  a+++ +ci lhn  v+
  MMETSP0890-20130614|804_1 201 LRVNSECAFGEMIRRWGILWRPLEM-EFSRRADVIACCIRLHNFCVD 246
                68889**************999765.7788899**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:01.17
# Mc/sec: 671.80
//
Query:       MMETSP0890-20130614|813_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-05   23.4   3.8    6.4e-05   23.0   2.7    1.3  1  PF13634.1 Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> PF13634.1  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   2.7   4.7e-09   6.4e-05      15      96 ..       3      89 ..       1      94 [] 0.66

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.7e-09
  PF13634.1 15 lFGskpatggglFGasasqtastaggglFGssntkatsttggglFGssa........tttasstsgglFGsstattqtttggglFGqaqa 96
               lF +  ++ + ++ a+   t+ +++gglF   + + ++t++++lF +          ++++++tsgglF + + + + t++ +lF +  +
  MMETSP0890-20130614|813_1  3 LFTAEDSQLSAPVPAP---TQEKTSGGLFADEEPDLKPTKKSSLFTAEDsqlsapvpASSQKKTSGGLFADDEPDLKPTKKNSLFTAEDS 89
               4555444444444455...46788889999888888888888888886633333333334777888888888877788888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                       89  (0.00650965); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:01.52
# Mc/sec: 148.20
//
Query:       MMETSP0890-20130614|814_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28   11.3   1.7        2.3    8.3   0.0    2.1  2  PF13415.1 Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2    0.0095   1.3e+02      34      48 ..       2      16 ..       1      17 [. 0.79
   2 ?    8.3   0.0   0.00017       2.3      27      44 ..      35      52 ..      29      55 .] 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0095
  PF13415.1 34 igslPppRaghtata 48
               ++++Pp+R ++ +t 
  MMETSP0890-20130614|814_1  2 VPPPPPDRDYVPTTT 16
               5899****9987775 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00017
  PF13415.1 27 dtntweeigslPppRagh 44
               + n++ee++++Pp+R ++
  MMETSP0890-20130614|814_1 35 SFNNTEEVPPPPPDRDYV 52
               5689***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       115  (0.00841135); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.35s 00:00:00.63 Elapsed: 00:00:01.14
# Mc/sec: 114.61
//
Query:       MMETSP0890-20130614|818_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-62  206.4   0.0      9e-19   66.5   0.0    3.1  4  PF13475.1  Domain of unknown function (DUF4116)
    7.5e-05   22.5   0.1        1.3    8.9   0.0    3.1  3  PF02318.11 Rabphilin-3A effector domain N-terminal
    8.3e-05   22.1   0.0          4    7.0   0.0    3.3  3  PF07892.6  Protein of unknown function (DUF1667)
    0.00071   19.3   0.0       0.86    9.3   0.0    2.9  3  PF08678.5  Rsbr N terminal
  ------ inclusion threshold ------
      0.014   15.1   0.0        5.6    6.6   0.0    2.5  2  PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
      0.042   12.9   0.2        1.1    8.3   0.0    2.2  2  PF14100.1  Methane oxygenase PmoA
      0.048   13.5   0.1         12    5.8   0.0    2.1  2  PF05584.6  Sulfolobus plasmid regulatory protein
      0.086   12.6   0.4          3    7.7   0.0    3.0  4  PF10756.4  Protein of unknown function (DUF2581)
       0.11   12.4   0.5         11    6.0   0.0    2.3  3  PF13778.1  Domain of unknown function (DUF4174)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   5.9e-22     9e-19       1      49 []       5      53 ..       5      53 .. 0.99
   2 !   66.1   0.0   8.1e-22   1.2e-18       1      48 [.      30      77 ..      30      78 .. 0.99
   3 !   46.6   0.0   9.7e-16   1.5e-12       1      34 [.      55      88 ..      55      89 .. 0.98
   4 !   38.9   0.0   2.6e-13     4e-10       1      29 [.      80     108 .]      80     108 .] 0.99

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 5.9e-22
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
               DrEivl+av++ g+al+y+s eL+nD+eivl+Av qng al++as eLr
  MMETSP0890-20130614|818_1  5 DREIVLAAVTHRGWALEYASQELQNDREIVLAAVTQNGWALRFASQELR 53
               9***********************************************8 PP

  == domain 2    score: 66.1 bits;  conditional E-value: 8.1e-22
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
               DrEivl+av++ng+al+++s eL+nD+eivl Av  +g+a++ya eeL
  MMETSP0890-20130614|818_1 30 DREIVLAAVTQNGWALRFASQELRNDREIVLTAVTHDGCAFEYANEEL 77
               9*********************************************98 PP

  == domain 3    score: 46.6 bits;  conditional E-value: 9.7e-16
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAv 34
               DrEivl av+++g+a++y++eeL nD+eivl+Av
  MMETSP0890-20130614|818_1 55 DREIVLTAVTHDGCAFEYANEELNNDREIVLAAV 88
               9********************************9 PP

  == domain 4    score: 38.9 bits;  conditional E-value: 2.6e-13
  PF13475.1   1 DrEivleavkkngsalkylseeLknDkei 29 
                DrEivl+av+ ng+al+++s eL+nD+ei
  MMETSP0890-20130614|818_1  80 DREIVLAAVTDNGWALQFASQELRNDREI 108
                9***************************8 PP

>> PF02318.11  Rabphilin-3A effector domain N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0025       3.8      16      45 ..       4      33 ..       1      37 [. 0.88
   2 !    8.9   0.0   0.00084       1.3      16      45 ..      29      58 ..      26      69 .. 0.84
   3 !    6.5   0.0    0.0048       7.3      15      41 ..      78     104 ..      68     108 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0025
  PF02318.11 16 nDrqlalrakLkaGWsvhtaaaekkrkkes 45
                nDr+++l a  + GW++  a++e ++ +e 
   MMETSP0890-20130614|818_1  4 NDREIVLAAVTHRGWALEYASQELQNDREI 33
                9*******************9999987765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00084
  PF02318.11 16 nDrqlalrakLkaGWsvhtaaaekkrkkes 45
                nDr+++l a  + GW+++ a++e ++ +e 
   MMETSP0890-20130614|818_1 29 NDREIVLAAVTQNGWALRFASQELRNDREI 58
                9*****************999987766554 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0048
  PF02318.11  15 PnDrqlalrakLkaGWsvhtaaaekkr 41 
                  nDr+++l a  + GW+++ a++e ++
   MMETSP0890-20130614|818_1  78 NNDREIVLAAVTDNGWALQFASQELRN 104
                 59****************999987665 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0026         4       4      25 ..      20      41 ..      15      46 .. 0.87
   2 !    5.9   0.0    0.0062       9.4       5      27 ..      46      68 ..      43      71 .. 0.87
   3 !    6.7   0.0    0.0034       5.1       4      29 ..      70      95 ..      67     108 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0026
  PF07892.6  4 eeYakkeltnpkriltstVkve 25
                eYa +el+n + i+ + V  +
  MMETSP0890-20130614|818_1 20 LEYASQELQNDREIVLAAVTQN 41
               69**************999765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0062
  PF07892.6  5 eYakkeltnpkriltstVkvegg 27
                +a +el n + i+ + V  +g+
  MMETSP0890-20130614|818_1 46 RFASQELRNDREIVLTAVTHDGC 68
               79****************98876 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0034
  PF07892.6  4 eeYakkeltnpkriltstVkveggel 29
                eYa++el+n + i+ + V  +g  l
  MMETSP0890-20130614|818_1 70 FEYANEELNNDREIVLAAVTDNGWAL 95
               59**************9998766555 PP

>> PF08678.5  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.005       7.7      68      93 ..      14      39 ..       7      41 .. 0.86
   2 !    9.3   0.0   0.00057      0.86      67     100 ..      38      71 ..      36      84 .. 0.84
   3 ?    2.5   0.0      0.07   1.1e+02      67      82 ..      88     103 ..      70     108 .] 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.005
  PF08678.5 68 vqlGlpLklltkgLqvfrkvvyekmn 93
                + G+ L+++++ Lq  r++v+++++
  MMETSP0890-20130614|818_1 14 THRGWALEYASQELQNDREIVLAAVT 39
               578***************99998876 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00057
  PF08678.5  67 ivqlGlpLklltkgLqvfrkvvyekmndekvkeq 100
                + q+G+ L ++++ L+  r++v+++++++  + +
  MMETSP0890-20130614|818_1  38 VTQNGWALRFASQELRNDREIVLTAVTHDGCAFE 71 
                569**********************999886555 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.07
  PF08678.5  67 ivqlGlpLklltkgLq 82 
                +  +G+ L+++++ L+
  MMETSP0890-20130614|818_1  88 VTDNGWALQFASQELR 103
                4579*******99887 PP

>> PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0063       9.6      80     104 ..      20      45 ..      16      54 .. 0.91
   2 ?    6.6   0.0    0.0037       5.6      81     104 ..      71      95 ..      63     102 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0063
  PF09837.4  80 laqafeaLer.adlVlgpaeDGGYyL 104
                l+ a ++L++  ++Vl + ++ G+ L
  MMETSP0890-20130614|818_1  20 LEYASQELQNdREIVLAAVTQNGWAL 45 
                78899*****88************97 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0037
  PF09837.4  81 aqafeaLer.adlVlgpaeDGGYyL 104
                + a e+L++  ++Vl + +D G+ L
  MMETSP0890-20130614|818_1  71 EYANEELNNdREIVLAAVTDNGWAL 95 
                56889999978************98 PP

>> PF14100.1  Methane oxygenase PmoA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00071       1.1     102     150 ..      14      62 ..       1      72 [. 0.65
   2 ?    2.8   0.0     0.033        50     115     138 ..      77     100 ..      70     108 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00071
  PF14100.1 102 eeleWedqdgevllkEertitvsatddgawlldftstltasdadvtlgs 150
                ++  W  +   + l+  r+i  +a+++++w+l f+s+    d++++l+ 
  MMETSP0890-20130614|818_1  14 THRGWALEYASQELQNDREIVLAAVTQNGWALRFASQELRNDREIVLTA 62 
                4445666666666777788888888777888888877666777777764 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.033
  PF14100.1 115 lkEertitvsatddgawlldftst 138
                l+  r+i  +a++d++w+l+f+s+
  MMETSP0890-20130614|818_1  77 LNNDREIVLAAVTDNGWALQFASQ 100
                7889********999******997 PP

>> PF05584.6  Sulfolobus plasmid regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0079        12       7      40 ..       6      39 ..       2      41 .. 0.88
   2 ?    5.8   0.0    0.0078        12       7      39 ..      56      88 ..      50      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0079
  PF05584.6  7 telilirlsakcatLeeLeekTgaekeellVtLt 40
               +e +l+ ++++  +Le+  ++ + ++e +l   t
  MMETSP0890-20130614|818_1  6 REIVLAAVTHRGWALEYASQELQNDREIVLAAVT 39
               56789999*********************98766 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0078
  PF05584.6  7 telilirlsakcatLeeLeekTgaekeellVtL 39
               +e +l  +++  ++ e+ +e+ + ++e +l   
  MMETSP0890-20130614|818_1 56 REIVLTAVTHDGCAFEYANEELNNDREIVLAAV 88
               4667888899999****************9765 PP

>> PF10756.4  Protein of unknown function (DUF2581)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.82   1.2e+03      44      56 ..       3      15 ..       1      24 [. 0.71
   2 ?    1.0   0.0      0.23   3.4e+02      38      56 ..      19      40 ..       6      42 .. 0.70
   3 ?    7.7   0.0    0.0019         3      34      57 ..      43      66 ..      31      78 .. 0.86
   4 ?    0.6   0.0      0.32   4.9e+02      42      57 ..      76      91 ..      67     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.82
  PF10756.4 44 rdgelvplpavql 56
               + +++++l av++
  MMETSP0890-20130614|818_1  3 KNDREIVLAAVTH 15
               5677777777765 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.23
  PF10756.4 38 l...arldlrdgelvplpavql 56
                   a  +l  +++++l av+ 
  MMETSP0890-20130614|818_1 19 AleyASQELQNDREIVLAAVTQ 40
               3444777888899999999886 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0019
  PF10756.4 34 rgrrlarldlrdgelvplpavqlg 57
               +++r a  +lr +++++l+av+++
  MMETSP0890-20130614|818_1 43 WALRFASQELRNDREIVLTAVTHD 66
               56677999**************97 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.32
  PF10756.4 42 dlrdgelvplpavqlg 57
               +l+ +++++l av+ +
  MMETSP0890-20130614|818_1 76 ELNNDREIVLAAVTDN 91
               6777888888888875 PP

>> PF13778.1  Domain of unknown function (DUF4174)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.029        44       4      34 ..      24      54 ..       3      58 .. 0.67
   2 ?    6.0   0.0    0.0073        11       4      53 ..      24      67 ..      21      71 .. 0.84
   3 ?    4.2   0.0     0.025        39       4      35 ..      74     105 ..      71     108 .] 0.82

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.029
  PF13778.1  4 sefrwkkRllvvfapseadprlqeqlealee 34
               s++ ++ R +v+ a +++ ++l++  + l++
  MMETSP0890-20130614|818_1 24 SQELQNDREIVLAAVTQNGWALRFASQELRN 54
               5566666666666666666666666666665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0073
  PF13778.1  4 sefrwkkRllvvfapseadprlqeqlealeeakcelaeRdvvvltltgeg 53
               s++ ++ R +v+ a +++ ++l++  + l++      +R++v+  +t++g
  MMETSP0890-20130614|818_1 24 SQELQNDREIVLAAVTQNGWALRFASQELRN------DREIVLTAVTHDG 67
               788899999***********99999999999......7777777777765 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.025
  PF13778.1   4 sefrwkkRllvvfapseadprlqeqlealeea 35 
                +e+ ++ R +v+ a +++ ++lq+  + l+++
  MMETSP0890-20130614|818_1  74 NEELNNDREIVLAAVTDNGWALQFASQELRND 105
                57788899999999999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:01.04
# Mc/sec: 248.85
//
Query:       MMETSP0890-20130614|823_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        71  (0.0051931); expected 273.4 (0.02)
Passed bias filter:                       55  (0.00402282); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.59
# Mc/sec: 211.20
//
Query:       MMETSP0890-20130614|821_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-17   60.5   1.7    7.1e-07   27.9   0.1    3.7  3  PF00036.27 EF hand
    3.6e-15   55.2   0.7    8.3e-05   22.0   0.1    4.0  4  PF13833.1  EF-hand domain pair
    3.4e-14   52.6   3.4    1.4e-13   50.5   0.7    2.6  2  PF13499.1  EF-hand domain pair
    1.2e-12   46.4   2.2    2.4e-05   23.3   0.2    3.7  3  PF13202.1  EF hand
    7.2e-12   44.0   2.2    3.9e-05   23.0   0.1    3.8  3  PF13405.1  EF-hand domain
    0.00057   19.4   5.1       0.19   11.3   0.1    3.7  4  PF12763.2  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.013   15.4   0.3      0.046   13.6   0.0    2.2  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
       0.16   11.9   2.1       0.94    9.4   0.0    2.7  3  PF07579.6  Domain of Unknown Function (DUF1548)


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0081        14       4      26 ..     124     146 ..     122     149 .. 0.81
   2 !   27.9   0.1   4.1e-10   7.1e-07       2      29 .]     189     216 ..     188     216 .. 0.95
   3 !   24.5   0.1   5.1e-09   8.7e-06       4      26 ..     232     254 ..     230     257 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0081
                 HHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkeal 26 
                  + k++D D++G I+ + +++++
   MMETSP0890-20130614|821_1 124 ALLKKIDPDQTGIINQSKWQTFV 146
                 56899*********988777665 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4.1e-10
                 HHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkkl 29 
                 ++++F+ +D D++G Is +Ef+ea++kl
   MMETSP0890-20130614|821_1 189 FRRVFDAIDSDNNGSISHDEFVEAMAKL 216
                 789**********************986 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 5.1e-09
                 HHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkeal 26 
                 ++Fk +D DgdG++sf+Ef  +l
   MMETSP0890-20130614|821_1 232 NLFKRADLDGDGTLSFDEFACLL 254
                 68*****************9987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0024         4      29      52 ..     124     147 ..     122     149 .. 0.87
   2 !   21.7   0.0   5.7e-08   9.8e-05      22      53 ..     183     215 ..     166     216 .. 0.77
   3 !   22.0   0.1   4.9e-08   8.3e-05      27      51 ..     230     254 ..     221     256 .. 0.85
   4 ?   -2.2   0.0       1.7   2.9e+03       8      26 ..     268     293 ..     266     298 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0024
  PF13833.1  29 ilfrefDtdgdGkisfeEFcvlle 52 
                +l++++D d+ G+i++  + +++ 
  MMETSP0890-20130614|821_1 124 ALLKKIDPDQTGIINQSKWQTFVN 147
                79**************99988776 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 5.7e-08
  PF13833.1  22 lseee.vdilfrefDtdgdGkisfeEFcvller 53 
                 s++  ++ +f+++D d++G is +EF++++++
  MMETSP0890-20130614|821_1 183 ESDQAyFRRVFDAIDSDNNGSISHDEFVEAMAK 215
                567777899*********************987 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 4.9e-08
  PF13833.1  27 vdilfrefDtdgdGkisfeEFcvll 51 
                   lf+ +D+dgdG +sf+EF  ll
  MMETSP0890-20130614|821_1 230 TSNLFKRADLDGDGTLSFDEFACLL 254
                678******************8655 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 1.7
  PF13833.1   8 eeLkral.all.glkg.....lseee 26 
                ++L +++ ++l +l+      ls+++
  MMETSP0890-20130614|821_1 268 HDLTECSyRALdRLQNnygiqLSAND 293
                67777777776322223333376665 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.22   3.8e+02      44      58 ..     124     138 ..     110     159 .. 0.78
   2 !   50.5   0.7   8.5e-17   1.4e-13       3      64 ..     190     252 ..     187     254 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.22
  PF13499.1  44 yifkelDkngdGvls 58 
                +++k++D +++G ++
  MMETSP0890-20130614|821_1 124 ALLKKIDPDQTGIIN 138
                556777777777665 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 8.5e-17
  PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels.deevrevldyifkelDkngdGvlsfeEflq 64 
                +++F+++D+d++g+++ +e+++++ +l    + ++++++   ++fk++D++gdG+lsf+Ef+ 
  MMETSP0890-20130614|821_1 190 RRVFDAIDSDNNGSISHDEFVEAMAKLDIATTtQKDSKTNTSNLFKRADLDGDGTLSFDEFAC 252
                789************************98888*******99********************86 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.1   1.8e+02       3      18 ..     124     139 ..     122     146 .. 0.80
   2 !   18.7   0.1   4.1e-07    0.0007       2      23 ..     190     211 ..     189     214 .. 0.87
   3 !   23.3   0.2   1.4e-08   2.4e-05       4      21 ..     233     250 ..     231     253 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.1
                HHHHHH--S----B-H CS
  PF13202.1   3 dtFrafDlNgDGkIsr 18 
                ++++++D +  G I+ 
  MMETSP0890-20130614|821_1 124 ALLKKIDPDQTGIINQ 139
                6899********9986 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 4.1e-07
                HHHHHHH--S----B-HHHHHH CS
  PF13202.1   2 kdtFrafDlNgDGkIsreELkr 23 
                + +F+a+D ++ G Is++E+ +
  MMETSP0890-20130614|821_1 190 RRVFDAIDSDNNGSISHDEFVE 211
                568*****************66 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 1.4e-08
                HHHHH--S----B-HHHH CS
  PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                +F+++Dl+gDG++s++E+
  MMETSP0890-20130614|821_1 233 LFKRADLDGDGTLSFDEF 250
                6****************9 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   3.4e+02       4      21 ..     124     141 ..     122     149 .. 0.80
   2 !   23.0   0.1   2.3e-08   3.9e-05       1      27 [.     188     214 ..     188     220 .. 0.92
   3 !   16.5   0.1   2.8e-06    0.0048       5      26 ..     233     254 ..     231     262 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.2
                ---GCC-------B---H CS
  PF13405.1   4 eaFklfDkdgdGkidaeE 21 
                ++ k++D d++G i+++ 
  MMETSP0890-20130614|821_1 124 ALLKKIDPDQTGIINQSK 141
                56799*******999765 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 2.3e-08
                HHH---GCC-------B---HHHHHHH CS
  PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                ++r++F+++D d++G i+ +E++ a+ 
  MMETSP0890-20130614|821_1 188 YFRRVFDAIDSDNNGSISHDEFVEAMA 214
                59**********************997 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 2.8e-06
                --GCC-------B---HHHHHH CS
  PF13405.1   5 aFklfDkdgdGkidaeELrdaL 26 
                +Fk  D dgdG+++++E+  +L
  MMETSP0890-20130614|821_1 233 LFKRADLDGDGTLSFDEFACLL 254
                7*****************9887 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   1.7e+03      44      69 ..      54      79 ..      33      98 .. 0.70
   2 !    8.2   0.1    0.0011       1.8      32      70 ..     176     214 ..     149     227 .. 0.81
   3 !   11.3   0.1   0.00011      0.19      42      67 ..     227     252 ..     214     256 .. 0.79
   4 ?   -1.1   0.1      0.83   1.4e+03      70      97 ..     335     364 ..     280     367 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1
  PF12763.2 44 klekiwdladidedgkldfeefciam 69
                l++  +l ++++  ++d + f   m
  MMETSP0890-20130614|821_1 54 SLSSQLSLENVENQSSIDIDVFSFDM 79
               44555556666666666666665544 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0011
  PF12763.2  32 apvlknskleedklekiwdladidedgkldfeefciamr 70 
                +++ k s+ ++  + +++d  d d++g++  +ef+ am 
  MMETSP0890-20130614|821_1 176 SGIGKISESDQAYFRRVFDAIDSDNNGSISHDEFVEAMA 214
                555666777888899********************9995 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00011
  PF12763.2  42 edklekiwdladidedgkldfeefci 67 
                + + +++++ ad+d dg+l f+ef+ 
  MMETSP0890-20130614|821_1 227 KTNTSNLFKRADLDGDGTLSFDEFAC 252
                3455678999**************85 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.83
  PF12763.2  70 rlifd..lvngeikdvPselPewlvpeska 97 
                 lifd  l+ + ++ v + l + +v   k+
  MMETSP0890-20130614|821_1 335 ILIFDldLLKQVTQIVCKCLVDNFVERVKT 364
                256641156777777777777777766665 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.7e-05     0.046      56     111 ..     189     251 ..     125     252 .. 0.85
   2 ?   -2.4   0.0       2.6   4.4e+03      16      42 ..     430     456 ..     421     472 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.7e-05
  PF10591.4  56 veWkFnqlDtnkdkvlsksElaplrapl.......vklehCikeffksCDadkdkkisleEWc 111
                 +  F+ +D+++++++s+ E+ +  a+l          +  ++++fk++D+d d+++s++E++
  MMETSP0890-20130614|821_1 189 FRRVFDAIDSDNNGSISHDEFVEAMAKLdiatttqKDSKTNTSNLFKRADLDGDGTLSFDEFA 251
                555699***************9999999988887667788999******************96 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.6
  PF10591.4  16 lrdwlknvlaqlkerdeekehseelek 42 
                ++d  ++v  ++ ++ ++k+ + + ++
  MMETSP0890-20130614|821_1 430 MQDVYQVVQSNVTNDLSQKNDTLQSTS 456
                555555555554444444433333222 PP

>> PF07579.6  Domain of Unknown Function (DUF1548)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00055      0.94      54      78 ..     142     166 ..     128     176 .. 0.85
   2 ?   -1.0   0.1       0.9   1.5e+03      59      86 ..     393     420 ..     365     449 .. 0.54
   3 ?    0.6   0.3       0.3     5e+02      47     106 ..     431     491 ..     393     494 .] 0.63

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00055
  PF07579.6  54 lkeFlnaYknSgseLvesilkqile 78 
                 ++F+n Yk+S   L+ +i +q+++
  MMETSP0890-20130614|821_1 142 WQTFVNDYKKSKYTLIAYIASQTIS 166
                589*****************99876 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.9
  PF07579.6  59 naYknSgseLvesilkqilessqelkaa 86 
                ++Y +S +  ++si ++ ++  + l++a
  MMETSP0890-20130614|821_1 393 HNYSHSSNLTIDSISQSNINHLNSLRKA 420
                3455555555555544444433333333 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.3
  PF07579.6  47 rekydrllkeFlnaYknSgseLvesilkqiles.sqelkaalreflldelealelPet.era 106
                ++ y+++ ++ +n      ++ ++s+ +q+ ++  +e  +a r+++ +el ++ +P + +  
  MMETSP0890-20130614|821_1 431 QDVYQVVQSNVTNDLS-QKNDTLQSTSSQFAKAaGKEFAKAARTVVAEELLSVAVPIAtAAC 491
                4455555555554443.445556777777766515777778888888888888888664555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:01.13
# Mc/sec: 1038.42
//
Query:       MMETSP0890-20130614|825_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38    9.8   8.0      0.029   13.4   0.8    2.5  3  PF05384.6 Sensor protein DegS


Domain annotation for each model (and alignments):
>> PF05384.6  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   2.2e-06     0.029      24      69 ..       5      50 ..       2      57 .. 0.92
   2 ?   -1.3   0.0      0.07   9.6e+02      28      64 ..      66      95 ..      59     103 .. 0.57
   3 ?   -1.9   0.2      0.11   1.5e+03      27      56 ..     158     187 ..     154     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-06
  PF05384.6 24 karkeyerlkkeleevkekvsevikevdklekkerkarkrLaeVSr 69
               k+++++e l+++++ +kek +e i+ vd++e+ +  a +r+a+V  
  MMETSP0890-20130614|825_1  5 KSQQQAEALERQINAMKEKYVEEINYVDSVETIASIASARIAQVVE 50
               6899**************************************9965 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.07
  PF05384.6 28 eyerlkkeleevkekvsevikevdklekkerkarkrL 64
               e+e +  +  + +++v + ik+++   ++       +
  MMETSP0890-20130614|825_1 66 EIEGVIDDYAKCRHEVDKFIKKAEFAGTR-------M 95
               55555556666666666666666544433.......3 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.11
  PF05384.6  27 keyerlkkeleevkekvsevikevdklekk 56 
                + +e+ ++ l+++k++++   +e+d+++ +
  MMETSP0890-20130614|825_1 158 STTEDTNQALDDTKQNIEIQANESDTIQLE 187
                556778899999999999999999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       931  (0.0680954); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.01
# Mc/sec: 1115.14
//
Query:       MMETSP0890-20130614|833_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:01.97
# Mc/sec: 549.82
//
Query:       MMETSP0890-20130614|822_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-96  322.8  32.3    2.6e-96  322.4  22.4    1.1  1  PF00909.16 Ammonium Transporter Family
  ------ inclusion threshold ------
       0.86    8.8   6.0        4.8    6.4   0.2    3.1  3  PF04846.8  Herpesvirus pp38 phosphoprotein


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.4  22.4  3.9e-100   2.6e-96       2     396 ..      73     503 ..      72     505 .. 0.91

  Alignments for each domain:
  == domain 1    score: 322.4 bits;  conditional E-value: 3.9e-100
                 HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---...-------...................--TT...-B----BHHH............HHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----.........------TTHHHHHH----------------...--S--GSBHHHHH---HHHH--------------SHHHHH...HHHHHHHHHHHHH-------TTT---.-----------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--........-----------..-HHHHHHHHHHHHHHH---TTT---HHHHHH--..-B-XHHHHHXXXHHHHXXX CS
  PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign...................lglsaagvqdetlldgl............fflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvl........iDfAgstvVHlvggvagLaaalvlgkregrfegkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara..raavtTllAaaagaltallisrlkegk.invlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv........askisggllsgegkqlvvqligilvilayafvvtlilllllklllg..LrvseeeeevglDvaehge 396
                 +ll+ + +v+fmqagfa+le g+v+ kn+ nil+knl+d+a+  l++++ Gy+lafg +  + +  gn                                   l             ++fq+afa t++tivsga+aer++f ay  +s+ll++ +yp v+h+ w+++g ++ ++          iDfAgs+vVH +ggva+ ++a+++g+r+grf  +++ ++ ++++f  lG+l+Lw+gW+gFN++s+l++ +       +++tT++Aaa++ ++ ++i ++++ + i+   + nGilAGlV++Ta+c++ + wgA+  Gl+A+ + + + +     + idD++d+++vHg +G+wG++a g+fa+e ++        a++ +g + +g+g +l++ +    + +a++    +i++ llk++    +rvs+e e++g+D ++hg 
   MMETSP0890-20130614|822_1  73 WLLFGTCMVFFMQAGFAMLEVGQVQVKNTKNILIKNLFDAAIAALMWWATGYALAFGAD-TFDKTGGNglyggsgffyegigqgddaS--P------------LtntpfaktygkaSWVFQWAFAGTTATIVSGAIAERATFGAYAAYSTLLVGYIYPAVVHMGWSADGKFSPWRSNrlfggcgmIDFAGSGVVHFTGGVAAIICAYMVGPRKGRFGPNAYHLEQQSAIFQSLGVLILWVGWYGFNGASTLAIGGYGGVaaHVFMTTTIAAATACVINVVICYFTSHHvIDPAAANNGILAGLVGVTAGCSTSNLWGAFFTGLIASPVYLCASA-TLVYFEIDDVVDAFPVHGACGFWGVIAAGLFATEFYYsgsyysdrADDCAGAFYGGDGGSLGSGICFLFTNVAWTGSNIFIMMALLKYVYPygIRVSDEVETIGMDDSKHGG 503
                 88899999*************************************************99.7888888877777776665555444222..2............13344445555559********************************************************9999999************************************************************************99876666689**********99999999988887779***********************************999999996.999*******************************9999***99966666666666666******************************98777*****************85 PP

>> PF04846.8  Herpesvirus pp38 phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.54   3.7e+03      52      58 ..      28      34 ..      25      45 .. 0.66
   2 ?    6.4   0.2   0.00071       4.8      20      31 ..      74      87 ..      70     119 .. 0.65
   3 ?    4.2   0.2    0.0035        24      41      61 ..     363     383 ..     354     385 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.54
  PF04846.8 52 lafcagl 58
               +af+ag+
  MMETSP0890-20130614|822_1 28 VAFLAGA 34
               5666665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00071
  PF04846.8 20 LvlGscmsfa..aG 31
               L++G+cm f+  aG
  MMETSP0890-20130614|822_1 74 LLFGTCMVFFmqAG 87
               89*******85555 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0035
  PF04846.8  41 qttacnkvgLllafcagllvr 61 
                 t +c + +L  af +gl++ 
  MMETSP0890-20130614|822_1 363 VTAGCSTSNLWGAFFTGLIAS 383
                5789**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.39s 00:00:01.25 Elapsed: 00:00:00.87
# Mc/sec: 1462.60
//
Query:       MMETSP0890-20130614|832_1  [L=1188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.2e-206  686.4   0.0   3.4e-206  685.7   0.0    1.3  1  PF00133.17 tRNA synthetases class I (I, L, M and V)
    1.5e-24   86.3   0.0    5.2e-24   84.6   0.0    1.9  2  PF08264.8  Anticodon-binding domain of tRNA
    3.9e-18   65.1   5.0    6.1e-08   31.6   0.4    4.7  5  PF09334.6  tRNA synthetases class I (M)
  ------ inclusion threshold ------
      0.081   11.9   0.0       0.21   10.5   0.0    1.6  1  PF01406.14 tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  685.7   0.0  9.9e-210  3.4e-206       3     597 ..      24     663 ..      22     667 .. 0.93

  Alignments for each domain:
  == domain 1    score: 685.7 bits;  conditional E-value: 9.9e-210
                 HHHHHHCTHHHHHHHHC----B--EE----B---------HHHHHHHHHHHHHHHC---B-------B----HHHHHHHC-.---ST....TS-CHHHHHHHCHHHHHHHHHHHHHHHC------TTS---TTSHHHHHHHHHH---TTT---EE---EEEEEETTTTCE--GGGE..EEEEEEEEEEE--BEE-S---.--B--EES-CCCCCG-BEEE--TTS---.....------B--TTTCHHHHCCTT--.............-S-------TT--EE-GC.......C--SEEEEE---S----------B------HHHH----SS-....----------------..-------SSHHHHCCHHHCTT------BEEEEEEEEEETTT--B-EEEEE---EE-HHHHCCHHHHHHHTSEESS--.--HHHHHHHCC---EE-EES-----B---EE-----EE-SCC.HHHHHHHHHCC-....--HHHHHS-CHHHS...-------EE---EE-CCCC---TT---TT....TSTT....S-..SSECEEEE--CCG---HHHHHHHHHCC----SECEEEE---EE--------TT------CHHHHHH---HHHHHHHC.TS-TTS- CS
  PF00133.17   3 lekWeeedlfkkslekekekekFvlvdgPPnatGslHiGhalaktlkdivirykrmkGkdveyvpGwDhhGlpieakvekklgkkekkereklgrekfrekvrewkaeyaeeirkqvkrLGvsvdwdreylTldeeleeavievfvelakkGliyrgkklvnwstklktalselEv..eykdvkdalihvafpladkke.aklviwTTtPwTllgntavavnpeleyv.....vedellilaeallesllkkkkee.............ledergkeLegkkvelpl.......ldreipiiadeyvdkeaGtGiVkiaPahgedDyevgkkhnl....evinvldedGtlneea..eefeglkrfkarkkiveeLkekglllkkekiehsypfcwrsktpiiyrateqWfvkvkelaeaalkavekvkfvpks.kekrykswleniqdWcisRqrwWGtripvwvsketeevvvreelkelvakrleee....aeekalekeakdkl...kkekgklekdedvlDvWFdSgstpfsvlgypeentke....fkkffpadllleGlDqirgWvarlillslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvikkygadalRltliassdvgrd 597
                 l  W+++++f ks+e +++k++++++dgPP+atG +H+Gh+la t+kd+v+ry++++G++v +++GwD+hGlp+e++++kklg + ++e+ ++g++ ++ ++r+++++y++e+++ v+rLG+++d++++y T+d++++e+v++vf+++++kGl+y+g k++++st+++t+ls++E+  +ykd+kd++++v+fp+ d+++ a+lv+wTTtPwTl++n+a++vnpeley      ++++ ++la+a+le+++ + +++              + + g  L+g+k+e+++       ++ +++++ad yv+++aGtG+V++aPa+gedD++v+  h++    +v +++d++G++   +  +++ g ++++a+ +i++ Lk ++ l+ +e+ ehsypfcwrs+tp+iy+a+++ fv+v++l++++l++++k+++vp + kekr+++wl++++dW isR+r+WGt+ip++ sk+ + v +  ++ +l a + +++    +e ++l++e++d+l   ++   +l+++++v+D+WF+Sgs+p++++++p+en  +    ++++fpad+++eG+Dq+rgW+++l ++++al ++  +k+++v+g vl+e+G KMSK+l+N+ dp+ vi+ +gadalRl+li +s+v+r 
   MMETSP0890-20130614|832_1  24 LMYWKKINAFCKSVELSQGKPEYTFYDGPPFATGLPHYGHILAGTIKDTVTRYAHQTGHHVSRRFGWDCHGLPVEYEIDKKLGLTSRDEVLEMGIDTYNGHCRSIVQRYTSEWESVVTRLGRWIDFKNDYRTMDTSFMESVWWVFKQMYDKGLVYKGFKVMPYSTACTTPLSNFEAgqNYKDTKDPAVVVSFPMIDDNDqASLVAWTTTPWTLPSNLALCVNPELEYRkvrhlKTGRVYVLATARLEQIFIELRSKkkktdpatvyetiGKPFLGITLVGIKYEPLFdffvkthKKMAYKVVADKYVTSDAGTGVVHQAPAFGEDDFRVCLSHGIvskdDVPCPIDDNGRFVAPVlhPDLLGKHVKDADPSIIAILKSRNRLIVNEQLEHSYPFCWRSDTPLIYKAVPSIFVNVESLKDKLLANNDKTYWVPANvKEKRFHNWLAEAKDWAISRNRFWGTPIPLFESKDAKIVKAIGSVADLLALKPTRNgkavTEITDLHREFVDDLvltTEDGIELRRVDEVFDCWFESGSMPYAQIHFPFENDLDeskfLAERFPADFIAEGIDQTRGWFYTLTVIATALYDRPAFKNLIVNGTVLAEDGNKMSKRLKNYPDPSLVIHSHGADALRLYLI-NSPVVRG 663
                 568*****************************************************************************************************************************************************************************99***************96655549**************************99999999************9975544443456799988776667889999999**9999*****988999******************************************************999899**************************************************************************999************************************99999999988775544331111567899******99986666669**************************9654411125678*****************************************************************************.9988875 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   1.5e-27   5.2e-24       1     151 [.     721     887 ..     721     890 .. 0.88
   2 ?   -2.7   0.0       1.2     4e+03     126     149 ..    1029    1052 ..    1012    1055 .. 0.76

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 1.5e-27
  PF08264.8   1 drwilselnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaeds.rraqtvlaevletllrllaPfmPfltEelwqrl.............eeellgkkesimlaewPedseel..eeel.e...eeevellkeivkairklrselkikpsselkv 151
                d wi + l+ l + v + ++ yr+++++ +l  f   dl +wy++l+++rl++ +  d+  +a +vl+evl  + rl+aPf+Pf++E l+q+l              +++lg  +s++  e P+ + e   e+++      + v+l++++v++ rk+r+e ki+ +++++ 
  MMETSP0890-20130614|832_1 721 DLWIFAALDDLTAFVHQEMNAYRLYTVVPRLVGF-LGDLTNWYVRLNRSRLKGGD--DDtFTALAVLFEVLLHMARLMAPFTPFFAEFLYQKLrsrlpayakrdslPADMLGAADSVHFVELPK-AVESspEKKIiSsraLQGVRLMQSVVELGRKAREEAKINMKTPVRS 887
                78*******************************7.999*************6643..4434488****************************************9988899************6.44442333334257899*************************9875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.2
  PF08264.8  126 llkeivkairklrselkikpssel 149 
                 +++e+v+ ++klr++ k++    +
  MMETSP0890-20130614|832_1 1029 IAREVVNRVNKLRKKAKLNMGDVV 1052
                 556899999999999988876655 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.4   1.8e-11   6.1e-08       8     131 ..      53     195 ..      51     223 .. 0.80
   2 ?   -2.3   0.0      0.34   1.1e+03      55     104 ..     277     329 ..     273     336 .. 0.63
   3 !   18.0   0.1   2.3e-07    0.0008     166     243 ..     415     491 ..     400     496 .. 0.81
   4 !   12.4   0.0   1.2e-05     0.039     307     359 ..     607     661 ..     559     682 .. 0.78
   5 ?   -4.3   0.0       1.4   4.8e+03     187     230 ..     932     976 ..     926     983 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.8e-11
                -B-----B-------HHHHHHHHHHHH---EEEEE---B----HHHHHHHH-.---HHH................HHHHHHHHHHHHHHHHT..---SB---TTSHHHHHHHHHHHHHHHH---EEEEEEEEEEBTTTTB--- CS
  PF09334.6   8 pYvngkpHlGhlystiaaDvlarykrlrgeevlfvtgtDehGtkielkAeke.gltpqe................lvdkvseefkelfkkln..isfDkfirTtseehkelvqeffkklkekgliyekeieqlYcvsderflp 131
                p++ g pH Gh+++  + D+++ry  + g++v    g D hG ++e + +k+ glt ++                +v+++++e+++++++l+  i+f + +rT ++   e v  +fk++++kgl+y++     Y++++ + l+
  MMETSP0890-20130614|832_1  53 PFATGLPHYGHILAGTIKDTVTRYAHQTGHHVSRRFGWDCHGLPVEYEIDKKlGLTSRDevlemgidtynghcrsIVQRYTSEWESVVTRLGrwIDFKNDYRTMDTSFMESVWWVFKQMYDKGLVYKGFKVMPYSTACTTPLS 195
                7899******************************************987543355543211111111111211116777777777888777667999999*************************************987665 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.34
                HHHH----HHHHHHHHHHHHHHHH...HHHT---SB---TTSHHHHHHHHHHH CS
  PF09334.6  55 kAekegltpqelvdkvseefkelf...kklnisfDkfirTtseehkelvqeff 104
                + +k++++p+++ +++ + f  +     k +  fD f +T+++  +++v + +
  MMETSP0890-20130614|832_1 277 RSKKKKTDPATVYETIGKPFLGITlvgIKYEPLFDFFVKTHKKMAYKVVADKY 329
                55666666666666666655443210123334489*******99999998755 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 2.3e-07
                S-B-S----B-EEEEEEEEEE-GGGTHHHHHHHHSS-...--HHHHHHHHHHH------EE-EE------B-SS---- CS
  PF09334.6 166 npksaisgskpevkeeehyffklskfeeklkewikenkelpkenvkevlkewlkegLkdlsisrdlkwGipvpedekk 243
                 p +  s++  ++k   ++f +++++++kl++  +++  +p +  ++  ++wl e  kd++isr+  wG p+p  e+k
  MMETSP0890-20130614|832_1 415 YPFCWRSDTPLIYKAVPSIFVNVESLKDKLLANNDKTYWVPANVKEKRFHNWLAE-AKDWAISRNRFWGTPIPLFESK 491
                577888999999******************99886664546666667789***87.9****************44433 PP

  == domain 4    score: 12.4 bits;  conditional E-value: 1.2e-05
                B-B---SB--B---EEE-.--B-BTTTTBS-BHHHHTTTS-HHHHHHHHHH.T-- CS
  PF09334.6 307 aglklpkkvvahgyltve.gekmSkSrgnvvdpeelleelgvdalRYyllr.eap 359
                 + ++ k+++++g ++ e g+kmSk ++n  dp+ ++++ g+dalR yl++  + 
  MMETSP0890-20130614|832_1 607 YDRPAFKNLIVNGTVLAEdGNKMSKRLKNYPDPSLVIHSHGADALRLYLINsPVV 661
                566788999999988876256****************************983444 PP

  == domain 5    score: -4.3 bits;  conditional E-value: 1.4
                -GGGTHHHHHHHHSS-...--HHHHHHHHHHH------EE-E.E- CS
  PF09334.6 187 klskfeeklkewikenkelpkenvkevlkewlkegLkdlsis.rd 230
                kl++f++kl +  k+ +e+ k   +++l+ +++e++k l i  +d
  MMETSP0890-20130614|832_1 932 KLPEFAKKLGKRTKSATEAVKALDSSKLRGLISENVKSLTIApND 976
                688999999999988888899999999999999999999998555 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.1e-05      0.21     229     282 ..     603     657 ..     586     664 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.1e-05
                 HHHHH----EEEE-----EEE.TTBE--TT-----BHHHHHTTS-HHHHHHHHH- CS
  PF01406.14 229 seaafdkqlvkywlhnghlki.egekmsksLknfltikdvlkkfdprqlRlllls 282
                  +a++d++  k  + ng +   +g+kmsk Lkn+     v++++ + +lRl+l++
   MMETSP0890-20130614|832_1 603 ATALYDRPAFKNLIVNGTVLAeDGNKMSKRLKNYPDPSLVIHSHGADALRLYLIN 657
                 578999888888888887655279***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.61u 0.40s 00:00:02.01 Elapsed: 00:00:01.31
# Mc/sec: 2173.18
//
Query:       MMETSP0890-20130614|838_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       100  (0.00731422); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.41s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 114.45
//
Query:       MMETSP0890-20130614|840_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.5   0.5    1.2e-17   63.4   0.4    1.0  1  PF13424.1  Tetratricopeptide repeat
    3.3e-17   61.6   3.5    1.2e-10   40.8   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.1e-07   31.2   0.5    2.2e-07   30.3   0.4    1.5  1  PF13414.1  TPR repeat
    1.2e-07   30.8   0.5    0.00043   19.7   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.9e-07   30.2   2.1    0.00011   21.5   0.1    2.2  2  PF00515.23 Tetratricopeptide repeat
    6.4e-07   28.7   2.5    7.2e-05   22.2   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.4e-05   25.4   1.1    1.6e-05   25.2   0.7    1.1  1  PF13432.1  Tetratricopeptide repeat
    0.00083   18.8   0.5     0.0032   17.0   0.1    1.8  2  PF13181.1  Tetratricopeptide repeat
    0.00088   19.1   0.3     0.0024   17.8   0.2    1.9  1  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   15.2   2.2       0.86   10.2   0.2    2.1  2  PF13428.1  Tetratricopeptide repeat
       0.13   11.9   0.2       0.34   10.6   0.0    1.7  2  PF07720.7  Tetratricopeptide repeat
       0.15   10.8   1.0       0.16   10.7   0.7    1.0  1  PF12805.2  FUSC-like inner membrane protein yccS
       0.18   12.1   1.4       0.26   11.7   0.1    2.0  2  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.4   1.2e-20   1.2e-17      21      76 ..       1      57 []       1      57 [] 0.98

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1.2e-20
  PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
               yd+A +l e+al + ++ lg++hp++a +lnnla l++++g+ydeA+++ e+Al+i+
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIrQENLGPNHPEVAQSLNNLAGLLQQQGKYDEAKPLQERALQIR 57
               9*************999*************************************996 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   7.7e-08   8.1e-05      18      42 .]       1      25 [.       1      25 [. 0.97
   2 !   40.8   0.1   1.1e-13   1.2e-10       1      32 [.      26      57 .]      26      57 .] 0.98

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 7.7e-08
  PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
               y++A +l+e+al ir++ lG++HP+
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIRQENLGPNHPE 25
               89**********************6 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 1.1e-13
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealair 32
               +a +lnnLA +l+++g+y+eA +l+e+al ir
  MMETSP0890-20130614|840_1 26 VAQSLNNLAGLLQQQGKYDEAKPLQERALQIR 57
               799***************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.4   2.1e-10   2.2e-07      19      67 ..       1      56 [.       1      57 [] 0.88

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.1e-10
  PF13414.1 19 ydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
               yd+A ++ e+Al+++     pn++e    ++nlA +++++g +y+eA    e+Al++
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIRqenlgPNHPEvaqSLNNLAGLLQQQG-KYDEAKPLQERALQI 56
               9************966666677776766*************.6************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00058      0.61      15      34 ..       1      20 [.       1      22 [. 0.86
   2 !   19.7   0.1   4.1e-07   0.00043       1      28 [.      29      56 ..      29      57 .] 0.90

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00058
  PF13176.1 15 yekAielyeraLaltkdpld 34
               y++A +l+eraL+++++ l+
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIRQENLG 20
               9*********9999988776 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 4.1e-07
  PF13176.1  1 allnLarlysrlgdyekAielyeraLal 28
               +l+nLa l +++g+y++A  l eraL++
  MMETSP0890-20130614|840_1 29 SLNNLAGLLQQQGKYDEAKPLQERALQI 56
               79****************9999997765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0011       1.1      17      34 .]       1      18 [.       1      18 [. 0.93
   2 !   21.5   0.1     1e-07   0.00011       1      30 [.      27      56 ..      27      57 .] 0.93

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHHHHTTH CS
  PF00515.23 17 ydeAleyyekALelnPnn 34
                yd+A +  e+AL+++ +n
   MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIRQEN 18
                9*************9876 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 1e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a++l+nl+ +++++gkydeA    e+AL++
   MMETSP0890-20130614|840_1 27 AQSLNNLAGLLQQQGKYDEAKPLQERALQI 56
                789******************999999987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1     0.005       5.3      17      33 ..       1      17 [.       1      18 [. 0.89
   2 !   22.2   0.1   6.8e-08   7.2e-05       1      30 [.      27      56 ..      27      57 .] 0.94

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.005
                HHHHHHHHHHHHHH-TT CS
  PF07719.12 17 yeeAleafekAleldPn 33
                y++A+++ e+Al++  +
   MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIRQE 17
                9************9766 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 6.8e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+ l+nl+ ++ ++g+y+eA+ + e+Al++
   MMETSP0890-20130614|840_1 27 AQSLNNLAGLLQQQGKYDEAKPLQERALQI 56
                5789************************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.7   1.6e-08   1.6e-05      13      59 ..       1      55 [.       1      57 [] 0.94

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.6e-08
  PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
               yd+A +++e+al+          Pe a+ l +la +l ++g++deA  l ++al+
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIRqenlgpnhPEVAQSLNNLAGLLQQQGKYDEAKPLQERALQ 55
               89******99999999*******************************99999986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.76     8e+02      17      31 ..       1      15 [.       1      18 [. 0.69
   2 !   17.0   0.1   3.1e-06    0.0032       2      30 ..      28      56 ..      27      57 .] 0.93

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.76
               HHHHHHHHH---HHH CS
  PF13181.1 17 ydkAkeylekalelk 31
               yd+Ak+  e+al + 
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRIR 15
               788887777777765 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.1e-06
               --TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
               ++++nl+ ++ q G+yd+Ak   e+al++
  MMETSP0890-20130614|840_1 28 QSLNNLAGLLQQQGKYDEAKPLQERALQI 56
               7899***********************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   2.3e-06    0.0024       9      33 ..      23      47 ..       7      48 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.3e-06
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
               +P+ a+++nnLA ll+ +G+++eA+
  MMETSP0890-20130614|840_1 23 HPEVAQSLNNLAGLLQQQGKYDEAK 47
               5666*******************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.028        30      17      36 ..       1      25 [.       1      30 [. 0.71
   2 ?   10.2   0.2   0.00082      0.86       4      29 ..      30      55 ..      27      57 .] 0.89

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.028
  PF13428.1 17 pdeAiallrrala.....laPddae 36
               +d+A +l +ral+     l+P+++e
  MMETSP0890-20130614|840_1  1 YDQAKQLHERALRirqenLGPNHPE 25
               699********99555445566665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00082
  PF13428.1  4 llalarallalGdpdeAiallrrala 29
               l  la +l ++G +deA  l +ral+
  MMETSP0890-20130614|840_1 30 LNNLAGLLQQQGKYDEAKPLQERALQ 55
               5679*******************998 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.3   1.4e+03      17      23 ..       1       7 [.       1      18 [. 0.73
   2 ?   10.6   0.0   0.00033      0.34       7      20 ..      33      46 ..      30      49 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.3
               HHHHHHH CS
  PF07720.7 17 yqeArel 23
               y++A +l
  MMETSP0890-20130614|840_1  1 YDQAKQL 7 
               8888776 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00033
               HHHHHHHTT-HHHH CS
  PF07720.7  7 lAaefynkkkyqeA 20
               lA  +++++ky+eA
  MMETSP0890-20130614|840_1 33 LAGLLQQQGKYDEA 46
               56679********9 PP

>> PF12805.2  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00015      0.16     218     261 ..       3      46 ..       1      56 [. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00015
  PF12805.2 218 qaeaceelaeailrrkpyqhserleraleeleqsleklaqqenp 261
                qa++++e a  i++++  + +++++++l++l   l+++ + +++
  MMETSP0890-20130614|840_1   3 QAKQLHERALRIRQENLGPNHPEVAQSLNNLAGLLQQQGKYDEA 46 
                9*********************************9994443332 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.9   4.1e+03      17      22 ..       8      13 ..       3      17 .. 0.70
   2 ?   11.7   0.1   0.00024      0.26       2      21 ..      28      47 ..      27      54 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3.9
               ----HH CS
  PF07721.9 17 ldeAra 22
               +++A++
  MMETSP0890-20130614|840_1  8 HERALR 13
               566766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00024
               HHH---HHHHHH-------H CS
  PF07721.9  2 rallaLArallalGdldeAr 21
               + l +LA +l+++G +deA 
  MMETSP0890-20130614|840_1 28 QSLNNLAGLLQQQGKYDEAK 47
               67789**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.32u 0.45s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 206.96
//
Query:       MMETSP0890-20130614|839_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-59  198.8   0.0    8.2e-59  198.6   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.6   0.0     6e-63   8.2e-59       3     282 ..       6     303 ..       2     304 .. 0.90

  Alignments for each domain:
  == domain 1    score: 198.6 bits;  conditional E-value: 6e-63
  PF00248.16   3 glGtwslgndeisedealellraaleaGinlfDtAeyY.........gkgqseellgealkksrkkreeviiatKvgrispiseglsre..nieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveilekakkkkkvkivvvqveynll.neleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd..........aqdaleelselakehgvslaqlalryalsr....pavgsvipgassieqleenlkalelelseeeiaeidell 282
                 ++G+ ++ +d++s++ ++ell+ ++e+ +++fDtAe+Y            ++e ++g++l+   ++r+++ +atK  ++ + +eg +     +++sl +sLkrlg+dy+Dl+++hr+ +     +e ++ +++lk+eG+ir+iG+S+   + l ++  ++  +++++q e++l+ + l+ee+l+++c+++++ i+aysplg+ lltg  ++ +     +++++          ++++l++++++a+++++s+aql+l++++++       +++ipg+++ ++   n++a ++ ++++e+  ++e++
   MMETSP0890-20130614|839_1   6 CMGMTAFYGDAMSDEAVVELLKFVYENNCRHFDTAEVYktknpmeddDGIYNEAQIGKFLQT--VPRDSFTVATKYFPPRWGDEGKKCTydIVKKSLLASLKRLGLDYVDLYYCHRIMNLEA-AKEFMRSCAKLKEEGLIRAIGLSEICGDWLLQC--HSISPVAAIQQEWSLItRGLVEEDLVPVCKQHDITIVAYSPLGRNLLTGVVTETPTD---WRADNpryspenlakNRKLLAQVQAIADKYNCSSAQLSLAWLFHKakqlGVSVLPIPGTTKMKHALSNIQATDISIDDSEMLPLEEIA 303
                 4555555555********************************999988889***********..************77777777766655599****************************9.***********************9998888889..****************999******************************99876443...333335568**********************************987766677889*************************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:01.03
# Mc/sec: 763.11
//
Query:       MMETSP0890-20130614|844_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-19   67.4   0.0    9.2e-19   67.3   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    4.7e-07   29.3   0.0    0.00078   19.0   0.0    2.1  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   1.3e-22   9.2e-19       3      66 ..       2      65 ..       1      66 [] 0.57

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 1.3e-22
  PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
               Ig++aF +c++lt++ ++  +t+Ige+aF +c+sl+++tlp  lt ig +aF +c+slt++t+p
  MMETSP0890-20130614|844_1  2 IGDFAFCGCTSLTHVVLSAGLTEIGEHAFFRCTSLTQVTLPVGLTMIGVSAFRGCTSLTQLTLP 65
               5566666666666666666666666666666666666666666666666666666666666655 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.1e-07   0.00078      16      56 ..       2      41 ..       1      42 [. 0.92
   2 !    8.5   0.0   0.00022       1.5      13      32 ..      45      64 ..      43      65 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.1e-07
  PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               i+d aF g+++L++  Ls   l++i ++af  ++sL+++ L
  MMETSP0890-20130614|844_1  2 IGDFAFCGCTSLTHVVLS-AGLTEIGEHAFFRCTSLTQVTL 41
               7888999***********.*****************99887 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00022
  PF13855.1 13 lkvipdgaFkglsnLkvLdL 32
               l+ i+ +aF g+++L+ L L
  MMETSP0890-20130614|844_1 45 LTMIGVSAFRGCTSLTQLTL 64
               56667777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 272.69
//
Query:       MMETSP0890-20130614|850_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   53.8  23.5    5.4e-11   42.5   7.9    2.0  2  PF13517.1  Family description
     0.0059   16.1  13.3      0.099   12.2   2.2    2.4  2  PF01839.18 FG-GAP repeat
  ------ inclusion threshold ------
       0.13   11.4   0.2       0.18   10.9   0.1    1.3  1  PF06092.7  Enterobacterial putative membrane protein (DUF943)
       0.36   10.1  10.1        1.2    8.5   0.2    2.8  2  PF00036.27 EF hand
       0.38   10.3   2.3        5.4    6.6   0.1    2.2  2  PF05436.6  Mating factor alpha precursor N-terminus
        1.1    9.2   7.0         10    6.1   0.1    3.1  3  PF13405.1  EF-hand domain
        5.8    6.6  15.6         10    5.8   2.7    2.8  2  PF00404.13 Dockerin type I repeat


Domain annotation for each model (and alignments):
>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   7.9   2.8e-14   5.4e-11       1      60 [.       3      62 ..       3      63 .. 0.84
   2 !   22.7   2.8   4.1e-08   8.1e-05       1      30 [.      52      83 .]      52      83 .] 0.86

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 2.8e-14
  PF13517.1  1 DldgDGdlDlvvag..dgglrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDll 60
               D+dgDGd D++ a+  d+++ +y n+g+  ft+      ++ +g+++v + D+dgDGd D+l
  MMETSP0890-20130614|850_1  3 DVDGDGDIDVLSASefDDTIAWYENDGNQGFTK--HAITTDADGAWAVFAIDVDGDGDIDVL 62
               9************85568888888888887775..44566668889**************97 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 4.1e-08
  PF13517.1  1 DldgDGdlDlvvag..dgglrlylnngdGtft 30
               D+dgDGd D++ a+  d+++ +y n+g+  ft
  MMETSP0890-20130614|850_1 52 DVDGDGDIDVLSASeaDDTIAWYENDGNQGFT 83
               9************7457889999999988886 PP

>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   1.7   0.00035      0.69       9      21 ..       3      15 ..       2      34 .. 0.79
   2 !   12.2   2.2   5.1e-05     0.099       3      20 ..      46      63 ..      44      81 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00035
                -TT---S-EEEEE CS
  PF01839.18  9 DfnGDGrpDlavG 21
                D++GDG+ D++  
   MMETSP0890-20130614|850_1  3 DVDGDGDIDVLSA 15
                9*********975 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 5.1e-05
                ECEEEE-TT---S-EEEE CS
  PF01839.18  3 nsvavgDfnGDGrpDlav 20
                ++v + D++GDG+ D++ 
   MMETSP0890-20130614|850_1 46 WAVFAIDVDGDGDIDVLS 63
                677777**********97 PP

>> PF06092.7  Enterobacterial putative membrane protein (DUF943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.4e-05      0.18      55     106 ..      20      71 ..      10      80 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.4e-05
  PF06092.7  55 gkinWweenkselkekynipkeasdgafsiviwdf.gdGykdleeeegksdll 106
                + i+W+e++ ++   k+ i ++a dga+ ++ +d+ gdG  d+   ++++d +
  MMETSP0890-20130614|850_1  20 DTIAWYENDGNQGFTKHAITTDA-DGAWAVFAIDVdGDGDIDVLSASEADDTI 71 
                67*****************9999.6******9999799999888877777765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.3    0.0066        13       9      19 ..       2      12 ..       1      13 [. 0.89
   2 ?    8.5   0.2   0.00061       1.2       9      18 ..      51      60 ..      46      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0066
                HCTTTSSEBEH CS
  PF00036.27  9 fDkDgdGkIsf 19
                +D+DgdG I++
   MMETSP0890-20130614|850_1  2 IDVDGDGDIDV 12
                7********95 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00061
                HCTTTSSEBE CS
  PF00036.27  9 fDkDgdGkIs 18
                +D+DgdG I+
   MMETSP0890-20130614|850_1 51 IDVDGDGDID 60
                8********9 PP

>> PF05436.6  Mating factor alpha precursor N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.018        34      42      57 ..       2      17 ..       1      24 [. 0.87
   2 ?    6.6   0.1    0.0028       5.4      42      59 ..      51      68 ..      30      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.018
  PF05436.6 42 LDleGDkDiavlPfsn 57
               +D++GD Di vl  s 
  MMETSP0890-20130614|850_1  2 IDVDGDGDIDVLSASE 17
               699********98875 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0028
  PF05436.6 42 LDleGDkDiavlPfsnat 59
               +D++GD Di vl  s a 
  MMETSP0890-20130614|850_1 51 IDVDGDGDIDVLSASEAD 68
               79**********999875 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.1     0.014        27       9      19 ..       2      12 ..       1      23 [. 0.79
   2 ?   -2.0   0.0       2.2   4.4e+03       9      16 ..      38      45 ..      36      46 .. 0.70
   3 ?    6.1   0.1    0.0054        10       8      19 ..      50      61 ..      47      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.014
               C-------B-- CS
  PF13405.1  9 fDkdgdGkida 19
               +D dgdG id 
  MMETSP0890-20130614|850_1  2 IDVDGDGDIDV 12
               7******7764 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.2
               C------- CS
  PF13405.1  9 fDkdgdGk 16
               + +d dG 
  MMETSP0890-20130614|850_1 38 ITTDADGA 45
               56789986 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0054
               CC-------B-- CS
  PF13405.1  8 lfDkdgdGkida 19
               ++D dgdG id 
  MMETSP0890-20130614|850_1 50 AIDVDGDGDIDV 61
               58*******995 PP

>> PF00404.13  Dockerin type I repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.7    0.0053        10       1      10 [.       3      12 ..       3      13 .. 0.91
   2 ?    5.8   2.7    0.0053        10       1      10 [.      52      61 ..      52      62 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0053
                -TT-SS--SH CS
  PF00404.13  1 DVNgDGkVna 10
                DV+gDG ++ 
   MMETSP0890-20130614|850_1  3 DVDGDGDIDV 12
                9*******96 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0053
                -TT-SS--SH CS
  PF00404.13  1 DVNgDGkVna 10
                DV+gDG ++ 
   MMETSP0890-20130614|850_1 52 DVDGDGDIDV 61
                9*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 320.80
//
Query:       MMETSP0890-20130614|849_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   12.2   1.7        0.4   11.0   1.2    1.7  1  PF09271.6  LAG1, DNA binding
       0.32    8.8  12.2       0.44    8.4   8.4    1.2  1  PF02724.9  CDC45-like protein
       0.62    8.4   5.1       0.73    8.2   3.6    1.2  1  PF04791.11 LMBR1-like membrane protein
       0.82    9.1   6.3        1.7    8.1   4.4    1.5  1  PF04386.8  Stringent starvation protein B
        1.1    9.1   8.2          3    7.7   5.7    1.7  1  PF14181.1  YqfQ-like protein


Domain annotation for each model (and alignments):
>> PF09271.6  LAG1, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   0.00015       0.4      44     136 ..      90     189 ..      64     196 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00015
  PF09271.6  44 naiaaseqateivalidiggkeesekekqklkldeqkklgaaalktlyisdsdkrkevklkvklfl.......gsgqelgtfeskrikviskpskkrqsl 136
                 + +++e++t+i++ ++  +++++ +e++  + ++++ + aa++   y  ++dk+k++ l+ ++           ++el   e kr+k +s  s +r+ +
  MMETSP0890-20130614|849_1  90 SDEENQEEETTISQENNSTESKKESDEERTIHNSKESLVTAALMLVTYLKSKDKKKNIVLEEEIPEwllpedrAAAAELAYPEEKRVKTVSPSSLRRNMM 189
                22223333355666555555555444555566666667777888999**************999776778664444888888999999999888777665 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.4   0.00016      0.44     110     187 ..      54     139 ..      41     200 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00016
  PF02724.9 110 elekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl..........a 187
                + e+eee  da ++ v+++++ee+  + d+++e++e++ee++++e   s+++++ e+++++++e++ ++++++              +
  MMETSP0890-20130614|849_1  54 TAEDEEEAVDAICQIVDSVDNEESLLQPDEENEEKESDEENQEEETTISQENNSTESKKESDEERTIHNSKESL--VtaalmlvtylK 139
                44566667789999989888877555555555555544444444433333333333333333333333333322..233455544441 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.6   0.00027      0.73     189     300 ..      31     147 ..      27     255 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00027
  PF04791.11 189 wkllvr.....eekaekle...dekeeaessvddi...lesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlksletlknkkaqrkv 300
                 w++lvr     ee+ e le   + +e+ e+ vd+i   ++svd  ++ll+  ee+  k+ +ee++ ++      +++++ ++s +  +ee++i +s+e l+    + l +++ lk k+++++ 
   MMETSP0890-20130614|849_1  31 WNNLVRssglsEENKEYLErivSTAEDEEEAVDAIcqiVDSVDNEESLLQPDEENEEKESDEENQEEETTI---SQENNSTESKKESDEERTIHNSKESLVT---AALMLVTYLKSKDKKKNI 147
                 88888888888555555551115667777788876111556666656666656665665555555444444...5666666667778888999999998875...456666666666655444 PP

>> PF04386.8  Stringent starvation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.4   0.00062       1.7      93     146 ..      62     115 ..      61     126 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00062
                GGGEEEEEEGGGTEEEE-S---XXXX...........XXXXXXXXXXXXXXXXX CS
  PF04386.8  93 faavlafydpevgfglkFeaeeaeeeeeeeeeeeekakeeeaeeakpeeeekek 146
                ++a+ +++d   +++  ++++e++ee+e++ee++e++++ ++e++++e++++++
  MMETSP0890-20130614|849_1  62 VDAICQIVDSVDNEESLLQPDEENEEKESDEENQEEETTISQENNSTESKKESD 115
                79*************999999999987776643433333333333333222222 PP

>> PF14181.1  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.7    0.0011         3      87     143 ..      64     125 ..      61     132 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0011
  PF14181.1  87 aivkifrelsssde......eteeeeeesteeeekeeeeetktekkekkkkevkkskkekeke 143
                ai++i+ + +++++      e+ee+e++++++ee+ ++  ++++++e+kk++ ++ +++++ke
  MMETSP0890-20130614|849_1  64 AICQIVDSVDNEESllqpdeENEEKESDEENQEEE-TTISQENNSTESKKESDEERTIHNSKE 125
                67777777777776666532333333333333333.333344445555555555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1759  (0.128657); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.86
# Mc/sec: 1092.29
//
Query:       MMETSP0890-20130614|853_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-32  111.4   0.0      1e-23   83.7   0.0    2.2  2  PF05970.9  PIF1-like helicase
    1.2e-10   41.2   0.0    0.00017   21.1   0.0    3.6  4  PF13604.1  AAA domain
    0.00088   18.8   0.2        1.5    8.2   0.0    3.2  3  PF13086.1  AAA domain
    0.00099   18.4   0.0      0.059   12.7   0.0    2.7  3  PF00270.24 DEAD/DEAH box helicase
     0.0057   16.6   0.0      0.024   14.6   0.0    2.1  1  PF13538.1  Family description
      0.006   14.2   0.0      0.027   12.1   0.0    2.0  3  PF02689.9  Helicase
     0.0062   16.5   0.0       0.02   14.8   0.0    1.9  1  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.017   14.3   0.5       0.54    9.3   0.0    2.3  2  PF00580.16 UvrD/REP helicase N-terminal domain
      0.024   13.9   0.0        0.2   10.9   0.0    2.1  2  PF01695.12 IstB-like ATP binding protein
      0.026   13.6   0.0      0.054   12.6   0.0    1.4  1  PF02562.11 PhoH-like protein
       0.14   12.2   0.0        0.6   10.1   0.0    2.1  2  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   8.1e-27     1e-23       1     156 [.      98     263 ..      98     286 .. 0.86
   2 !   25.6   0.0   3.8e-09   4.7e-06     247     362 ..     350     461 ..     308     463 .. 0.82

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 8.1e-27
  PF05970.9   1 qLneeQkkvfdaiiesvlnekgklfFvtGsgGtgKtylwkallkklrs......egkivlavAssGiAalllpgGrtahsrfkiplek..deestc..kikrgsklaellkktsliiwDEapmverecfealdrtlrdilkeke.......idkpFGGktvvlgGDfrQilPv 156
                qLn+eQ++v++ +      e gk+ F++G +G gKt+    +++klr+       ++ v+    +G+ a +l gG+t+hs+ +i++ k  +++s++  k+++++k++    k + + +DE +m+  e+++ +d+++r++ + ++       +++ FGG++++l+GD  Q++ +
  MMETSP0890-20130614|853_1  98 QLNKEQQEVVRLV------EAGKNCFFSGGAGVGKTFCASIIIEKLRQiyspeeFDDRVAICGPTGLSASHL-GGITIHSKSGIGVPKyaEDFSKMwgKVSKNEKEKLWAGKLRHLFLDECSMIPGEMLDRMDQVIRKMCSYSRdpnvsarAHEAFGGMQIILCGDPMQLPAI 263
                79***********......9**************************987766544678999999********.*********999876215566666777777777777779999************************9987779999999*****************7544 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 3.8e-09
  PF05970.9 247 vsevypdllqnltdeeyleerailaptneeveeiNnyilsklpgeekeylssDsvsksseeieeadalypteflnslkasglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivt 362
                +s    ++ +nl +++ l++ ++l p+n++v++iN     k+++ e  +++ D   +   ++++ d  +  e   +   +++++ +L Lk  + ++ll N++    L NG ++iv 
  MMETSP0890-20130614|853_1 350 ISILNTQCRRNLPRDKNLAQPVELFPKNSDVDRINTANYRKIKNTEYFFETQDAAVPFVIDSQQ-D--IRLEKIRKQFKDFIVPSRLALKHDTSILLLMNIELP-SLFNGRQGIVH 461
                4444445667778888999***********************************8888888666.3..333444444456788889****************88.7****999986 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07   0.00017       1     117 [.      98     226 ..      98     231 .. 0.72
   2 !   11.1   0.0   0.00015      0.19     121     138 ..     248     265 ..     237     275 .. 0.88
   3 ?    4.4   0.0     0.017        22     152     175 ..     314     337 ..     298     356 .. 0.83
   4 ?   -3.5   0.0       4.6   5.7e+03     141     162 ..     509     529 ..     506     553 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.4e-07
  PF13604.1   1 tlsaeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealea......agkrvvglAptgkaakvLeee.....lgiea.rTiasllerldkeeaegrkeldakt..llvvDEAgmvdtrqlarlleaa 117
                +l++eQ+e+v+ v   g + +  +G AG GKt+  + + e l++       + rv ++ ptg  a+ L+       +gi   +  + + + ++k +++++++l a++   l++DE +m+  + l+r+ +++
  MMETSP0890-20130614|853_1  98 QLNKEQQEVVRLVE-AG-KNCFFSGGAGVGKTFCASIIIEKLRQiyspeeFDDRVAICGPTGLSASHLGGItihskSGIGVpKYAEDFSKMWGKVSKNEKEKLWAGKlrHLFLDECSMIPGEMLDRMDQVI 226
                69*********874.44.457777*********99888888888888864369**************9987444444443312345566666666555555644444348999999999888887776655 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00015
  PF13604.1 121 gakvvlvGDteQlqavea 138
                g++++l+GD++Ql+a+ea
  MMETSP0890-20130614|853_1 248 GMQIILCGDPMQLPAIEA 265
                89***************8 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.017
  PF13604.1 152 taeLtevvRqkdeeeraasealre 175
                 + L++v+Rqkd+e +a+  alr+
  MMETSP0890-20130614|853_1 314 CVVLKQVYRQKDKEFAAILNALRR 337
                678*************99999987 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 4.6
  PF13604.1 141 vfrllaeeggetaeLtevvRqk 162
                +f++ +e++g   eL+ev+R  
  MMETSP0890-20130614|853_1 509 TFKKCVESIG-DKELEEVRRWV 529
                6888888889.89999999965 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0047       5.9       1      64 [.      98     158 ..      98     175 .. 0.83
   2 !    8.2   0.0    0.0012       1.5     223     237 ..     249     263 ..     245     266 .. 0.86
   3 ?   -0.4   0.1      0.51   6.4e+02      76      94 ..     483     501 ..     324     555 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0047
  PF13086.1   1 klnesqleaikealsssgitliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsna 64 
                +ln++q+e ++ +   ++ +   G  g GKt     +i +l  +++ s ++ + rv +c+p+  
  MMETSP0890-20130614|853_1  98 QLNKEQQEVVRLVEAGKN-CFFSGGAGVGKTFCASIIIEKL--RQIYSPEEFDDRVAICGPTGL 158
                6999****9999999999.9999999*****7777777777..4567899999******99865 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
  PF13086.1 223 kkvvLvGDpkQLppt 237
                 +++L GDp QLp++
  MMETSP0890-20130614|853_1 249 MQIILCGDPMQLPAI 263
                699**********97 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.51
  PF13086.1  76 ldeegkkynpkivRignea 94 
                 ++e +k++ k +  +n++
  MMETSP0890-20130614|853_1 483 SNKEEEKKKYKWTNAMNQD 501
                2223333333333333333 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.8e-05     0.059       3      39 ..     102     137 ..     100     162 .. 0.75
   2 ?    2.6   0.0      0.06        75     117     162 ..     196     254 ..     183     255 .. 0.78
   3 ?   -3.0   0.0       3.1   3.9e+03      85     113 ..     277     304 ..     269     343 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqil 39 
                  Q+e+++l+  g++++ ++  G GKT +++i +  +l
   MMETSP0890-20130614|853_1 102 EQQEVVRLVEAGKNCFFSGGAGVGKTFCASIIIE-KL 137
                 699****9999*******************9554.33 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.06
                 CCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT..............SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
  PF00270.24 117 gklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr..............lqvivl 162
                 +kl   ++r l lDE+ ++   ++ d ++q+++++c ++r              +q+i++
   MMETSP0890-20130614|853_1 196 EKLWAGKLRHLFLDECSMIPG-EMLDRMDQVIRKMCSYSRdpnvsaraheafggMQIILC 254
                 44556779***********99.99************998877777777777777777666 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.1
                 SSBHHHHHHHHHT..-SEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  85 gvalardqlsvldngvdivvgTpgrlddl 113
                 +v+ + + + + +++ +i+++  gr+ + 
   MMETSP0890-20130614|853_1 277 KVSAD-ESEYKQRGENKILYASRGRFFES 304
                 55533.44444477788888888887664 PP

>> PF13538.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.9e-05     0.024      54      97 ..     603     647 ..     573     650 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.9e-05
  PF13538.1  54 k......layaltihkaqGsefdaVvvpdpdaaafrelrrrllYtavTRA 97 
                +      ++yalt+hkaqG+  d               +r + Y+a++RA
  MMETSP0890-20130614|853_1 603 RiqvpltYGYALTVHKAQGMGLDRMRYDCQHNF-----ERGQGYVALSRA 647
                1344466************98887554444444.....566677777777 PP

>> PF02689.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         1   1.3e+03      65      84 ..     118     137 ..     114     138 .. 0.85
   2 ?   -1.9   0.0      0.36   4.5e+02     238     262 ..     251     274 ..     246     281 .. 0.82
   3 !   12.1   0.0   2.2e-05     0.027     742     787 ..     612     655 ..     597     672 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1
  PF02689.9  65 itGtAGaGKstsiqtlaenl 84 
                 +G AG GK+ + +++ e+l
  MMETSP0890-20130614|853_1 118 FSGGAGVGKTFCASIIIEKL 137
                589*********99998775 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.36
  PF02689.9 238 vivCvGSPtqtdalessfehkkqkk 262
                +i+C G P q  a+e+s+++++q +
  MMETSP0890-20130614|853_1 251 IILC-GDPMQLPAIEASYDPEMQTR 274
                4555.****************9964 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 2.2e-05
  PF02689.9 742 lamtiaksqGlSldkvAicFgkeknlklssvYvalSRvtdseflvm 787
                 a+t+ k+qG+ ld++  +  +  n+   + YvalSR+   + l +
  MMETSP0890-20130614|853_1 612 YALTVHKAQGMGLDRMRYDCQH--NFERGQGYVALSRALTMQGLEL 655
                69*************9777544..7*************98877766 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05      0.02       7     126 ..     116     259 ..     110     263 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
  PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae.karvvfveapastspkel.lqkllsalglpakgrltteellealqealrrrrt.......rlliiDEaqrLseealeelrslldd.................etgvklvlvGtp.e 126
                ++++G +GvGKT+++  + ++l + ++++e + r v +  p + s+++l   ++ s+ g +  +   +e+  ++  ++ +++++       r+l +DE   ++ e+l+       +                   g +++l+G p +
  MMETSP0890-20130614|853_1 116 CFFSGGAGVGKTFCASIIIEKLRQIYSPEEfDDR-VAICGPTGLSASHLgGITIHSKSGIGVPK--YAEDFSKMWGKVSKNEKEklwagklRHLFLDECSMIPGEMLDRMDQVIRKmcsysrdpnvsaraheaFGGMQIILCGDPmQ 259
                5789******************998888885555.55555555568888799*******99999..445544555555555555999************999888887774432222333344455555666677777777777755 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00043      0.54       1      45 [.      99     143 ..      99     156 .. 0.86
   2 ?    2.2   0.6     0.064        80      91     174 ..     347     502 ..     269     550 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00043
                 SSHHHHHHHHS..-SS-EEEE-------HHHHHHHHHHHHHTT---G CS
  PF00580.16   1 lnpeqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiep 45 
                 ln+eq+e ++    g++++ + +AG GKTf  a+ i++++++  ++p
   MMETSP0890-20130614|853_1  99 LNKEQQEVVRLveAGKNCFFSGGAGVGKTFC-ASIIIEKLRQI-YSP 143
                 699******998899**************96.77788888776.555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.064
                 CSEEEECCCHHHHHHHHCTGGGT.............HHTTTCEECHHHHH..HTTHHHHHHHHHCS....--HTTTTCCCCCCHHHHHHHCCCHCCC..............................................................HHHHHH CS
  PF00580.16  91 eanisTlHsfcqkilkkeanrig.............ldpnfrildeedee..dlkqqellkellek....saddslnldkkkleklikelsksrnik..............................................................keelsl 174
                 + +is l   c++ l ++ n ++             +         ++++  ++k +e ++e  ++      d+++++  +k++k+ k++++++ +                                                                 +++ 
   MMETSP0890-20130614|853_1 347 KRAISILNTQCRRNLPRDKNLAQpvelfpknsdvdrI---------NTANyrKIKNTEYFFETQDAavpfVIDSQQDIRLEKIRKQFKDFIVPSRLAlkhdtsilllmnielpslfngrqgivhgwaslaemfkkakslarglrdsnkeeekkkykwtnAMNQDE 502
                 4456666667777777777766666663333332221.........22224444444444444444444445788899999999999998888888888999999999999999977777776666555555555555555544444444444443333333333 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016       0.2      39      65 ..     105     131 ..      77     142 .. 0.76
   2 ?    0.1   0.0      0.33   4.1e+02      49      63 ..     149     163 ..     145     169 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
  PF01695.12  39 aslsfveqaenlvllGpsGvGKthlAi 65 
                    + ve+ +n+ + G++GvGKt+ A 
   MMETSP0890-20130614|853_1 105 EVVRLVEAGKNCFFSGGAGVGKTFCAS 131
                 5567899*****************986 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.33
  PF01695.12  49 nlvllGpsGvGKthl 63 
                  ++++Gp+G   +hl
   MMETSP0890-20130614|853_1 149 RVAICGPTGLSASHL 163
                 589********9998 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05     0.054       5      37 ..      99     131 ..      97     141 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-05
  PF02562.11   5 ktkeQkeylealkkndivfaiGpaGtGKTylav 37 
                  +keQ+e+++ +++ + +f  G aG GKT+ a 
   MMETSP0890-20130614|853_1  99 LNKEQQEVVRLVEAGKNCFFSGGAGVGKTFCAS 131
                 589***************************986 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00049       0.6       2      68 ..     117     212 ..     116     240 .. 0.60
   2 ?   -3.4   0.0       7.2     9e+03      27      57 ..     445     477 ..     438     479 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00049
                 EEE-------HHHHHHHHHHC....THE......................EEEEECCSSSSS...........T-HHHHHHHHHHHHHHHHTS...-SEEEEEETGG CS
  PF00004.24   2 llyGppGtGKTllakavakel....gve......................fleisgsellsk...........yvgesekkirelfkeakeka...kpsilfiDEid 68 
                  ++G  G+GKT +a+ ++++l    + +                      +                      y ++ +k   ++ k+ kek    k   lf+DE  
   MMETSP0890-20130614|853_1 117 FFSGGAGVGKTFCASIIIEKLrqiyS-PeefddrvaicgptglsashlggI----------TihsksgigvpkYAEDFSKMWGKVSKNEKEKLwagKLRHLFLDECS 212
                 5899****************843330.133333333333333333333332..........0222233322227777777777777776666577555788888865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.2
                 EEEECCSSSSS..T-HHHHHHHHHHHHHHHHTS CS
  PF00004.24  27 leisgsellsk..yvgesekkirelfkeakeka 57 
                 ++i++++l++    + ++ + ++e+fk+ak+ a
   MMETSP0890-20130614|853_1 445 MNIELPSLFNGrqGIVHGWASLAEMFKKAKSLA 477
                 667777777443366677788999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.14u 0.41s 00:00:01.54 Elapsed: 00:00:01.25
# Mc/sec: 1368.80
//
Query:       MMETSP0890-20130614|857_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.056   12.9   0.0       0.08   12.4   0.0    1.2  1  PF02096.15 60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.8e-06      0.08      81     185 ..     141     285 ..     135     295 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.8e-06
  PF02096.15  81 ilfalyrvlrnlae.lrsleeasflwiedLsapda..............................lipllilpilagltlflsqkl....ssks.......qkskdkqaaaqqkimnyimplmflfiflsfPaglllYwvvsnlfqi 185
                 ++f+ y +l  +++   s  e ++++ e+Ls++                                  ++  +p+ ++l++ +++ +    s  +       ++s++++++ +++++  im+l +l+++l +++ l l+ v+  +++i
   MMETSP0890-20130614|857_1 141 VFFGGYLTLDATFSiDISCDEYQLFQNESLSVTCDnddflvtakanveldkicagaskrflaigdAANVNAFPLEIILLQAAQIDVcdrcS--NyvssggeSSSQKNNKSVKKSTIHLIMTLTILVVVLALSSSLELFSVIYDIVGI 285
                 5666666666655532223444455444443332223344444444555555555555555555555566777777777777777744442..0333455456666667777777777********************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:01.01
# Mc/sec: 756.87
//
Query:       MMETSP0890-20130614|859_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.6   0.0       0.22   11.4   0.0    2.1  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05      0.22     107     202 ..      97     207 ..      65     209 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
                .EEE-GGGTS-.EE----EE-EEEESS-B-S-.---EEEE---------.......................................-EEE----..............---- CS
  PF05721.8 107 qpwHqDstflp.tdpeesvvgvwialedatee.nGclrfiPGSHkweegplrrrlpeddteae................ddeakkedeeeavpvevkaGdavlfhgrllHgsga 202
                 p H D       + +e++++vw+ l+++ e+ +G l+++         ++  r+ ++ +  +                ++e+ + + +++ p  ++aGda++f  + +H+s++
  MMETSP0890-20130614|859_1  97 FPFHTDFDSNGfMERPEEMITVWVPLTPVMEKgSGQLSIVHEEGAI--RLSLIRVANQLHSLTrvvdqsvpghvpfqmtQQEQIYLEHTRFTPS-LQAGDALVFCNAFFHKSEP 207
                5666665443322225777777777777755523334444332222..2233333333333335677777777888885556666666666665.99***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 922.43
//
Query:       MMETSP0890-20130614|864_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-34  115.1   5.8    8.4e-12   44.3   0.0    5.5  6  PF00400.27 WD domain, G-beta repeat
     0.0067   15.1   0.1          4    5.9   0.0    2.9  2  PF08801.6  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.17   1.2e+03      22      33 ..      47      61 ..      27      62 .. 0.69
   2 !   22.4   0.3     1e-08     7e-05       5      39 .]      75     109 ..      71     109 .. 0.95
   3 !   21.3   0.0   2.3e-08   0.00016       4      39 .]     116     150 ..     113     150 .. 0.87
   4 !   24.8   0.0   1.9e-09   1.3e-05      12      39 .]     174     202 ..     167     202 .. 0.94
   5 ?   -2.8   0.0      0.91   6.2e+03      20      30 ..     279     289 ..     277     290 .. 0.81
   6 !   44.3   0.0   1.2e-15   8.4e-12       4      39 .]     329     364 ..     326     364 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.17
                S...STEEEEEETTS CS
  PF00400.27 22 d...gpllasgSrDg 33
                    g +++s++ Dg
   MMETSP0890-20130614|864_1 47 KtgdGIFMISACLDG 61
                455588999***998 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1e-08
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  t+ gH+++V++ + + + ++ a+gS D + ++Wd
   MMETSP0890-20130614|864_1  75 GTFAGHKGAVWSAKLCKEARIAATGSGDFSAKIWD 109
                 799*******************************9 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 2.3e-08
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +atl+ H++ V  v++++d++ la++++ g++r++d
   MMETSP0890-20130614|864_1 116 LATLD-HSHIVKTVDIAQDRQKLATAGHEGKVRIYD 150
                 55554.55**************************98 PP

  == domain 4    score: 24.8 bits;  conditional E-value: 1.9e-09
                 SSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  12 spVtcvafspd.gpllasgSrDgtirlWd 39 
                 + ++ + + pd  +l+a g++Dg ir+Wd
   MMETSP0890-20130614|864_1 174 KQINKIVWLPDqTNLIAAGGADGLIRIWD 202
                 679*************************9 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 0.91
                 ESSSTEEEEEE CS
  PF00400.27  20 spdgpllasgS 30 
                 spdg+++  g+
   MMETSP0890-20130614|864_1 279 SPDGNIVMVGG 289
                 89999998887 PP

  == domain 6    score: 44.3 bits;  conditional E-value: 1.2e-15
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +++ +gH +pV+c++++p+g+ la+gS+Dgtir+W+
   MMETSP0890-20130614|864_1 329 ISERKGHCGPVRCLRYHPSGTSLATGSEDGTIRIWE 364
                 56779******************************6 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00059         4     186     222 ..     171     207 ..      99     223 .. 0.53
   2 !    4.7   0.0    0.0014       9.8     192     219 ..     339     366 ..     297     371 .] 0.88

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00059
  PF08801.6 186 seqeteivqlridssr.rilytlsskgtirvwdlspsg 222
                ++  ++i ++++ + + +++ +  ++g ir+wdl ++g
  MMETSP0890-20130614|864_1 171 NK-NKQINKIVWLPDQtNLIAAGGADGLIRIWDLRQNG 207
                22.22244444444444555555555555555555555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0014
  PF08801.6 192 ivqlridssrrilytlsskgtirvwdls 219
                + +lr ++s   l t s++gtir+w+ +
  MMETSP0890-20130614|864_1 339 VRCLRYHPSGTSLATGSEDGTIRIWEST 366
                67899999999**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.68
# Mc/sec: 1307.42
//
Query:       MMETSP0890-20130614|867_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-51  174.3   0.0    1.3e-51  174.1   0.0    1.1  1  PF00071.17 Ras family
    1.8e-19   70.3   0.0    4.8e-19   68.9   0.0    1.6  2  PF08477.8  Miro-like protein
    4.7e-12   45.3   0.0    6.8e-12   44.8   0.0    1.2  1  PF00025.16 ADP-ribosylation factor family
    2.5e-06   26.7   0.0    3.8e-06   26.1   0.0    1.3  1  PF04670.7  Gtr1/RagA G protein conserved region
    5.3e-05   22.6   0.0    8.8e-05   21.9   0.0    1.4  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0034   17.2   0.0     0.0058   16.5   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
     0.0038   16.3   0.2       0.09   11.8   0.0    2.2  2  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.029   13.4   0.3      0.065   12.3   0.0    1.8  2  PF09439.5  Signal recognition particle receptor beta subunit
      0.062   12.4   0.0      0.065   12.3   0.0    1.1  1  PF00372.14 Hemocyanin, copper containing domain
      0.095   12.0   0.2        1.3    8.3   0.1    2.2  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.0   9.4e-55   1.3e-51       1     161 [.       8     169 ..       8     170 .. 0.98

  Alignments for each domain:
  == domain 1    score: 174.1 bits;  conditional E-value: 9.4e-55
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 K+vl+G++ vGKts+llr+v++++++++ sT+ +  + +++++  g++v+l+iwDTAGqe+f++l + yyrda+g++lvydit+ esf++v+kwv+e+++++  ++ i + GnKvDle++rav +ee+ ++a+++g+ ++ tSAk+n+++++af++l +++ 
   MMETSP0890-20130614|867_1   8 KIVLLGEGRVGKTSILLRYVKGEYSDKQVSTLQASYLDRRLSLPgGNNVQLSIWDTAGQERFHALGPIYYRDADGAMLVYDITDYESFKKVRKWVRELRQIVGADICITIAGNKVDLEKQRAVPAEEATSYAQSVGADHVYTSAKQNKGLDDAFTALSQRMA 169
                 9*******************************999999999998789*************************************************************************************************************998875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   3.5e-22   4.8e-19       1     119 []       8     123 ..       8     123 .. 0.87
   2 ?   -1.4   0.0       2.1   2.9e+03      63      79 ..     173     189 ..     139     201 .. 0.56

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 3.5e-22
  PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                k+v++G+ +vGK+s+l ++v++e++  k  +  + + l   +    +++  l++wd++g+e++++  ++  ++ad+++lvyd+td+es+++v++ + +l+++ +    i + + gnk D
  MMETSP0890-20130614|867_1   8 KIVLLGEGRVGKTSILLRYVKGEYS-DKQVSTLQASYLDRRLSLPGGNNVQLSIWDTAGQERFHALGPIYYRDADGAMLVYDITDYESFKKVRKWVRELRQIVG--ADICITIAGNKVD 123
                89***********************.5555666666666666677777777**************87777**********************888888888884..679999*****98 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.1
  PF08477.8  63 lkkehell.lkkadaill 79 
                 kke  ++  k+++ i+l
  MMETSP0890-20130614|867_1 173 SKKE-SKApTKQRSSIVL 189
                1111.2222444444444 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0     5e-15   6.8e-12      15     174 ..       7     167 ..       4     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 5e-15
                 EEEEEE--TT---HHHHHHHHHS-EEE.E-S--S-EE..EEEEE...TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHHH CS
  PF00025.16  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnv..eelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 ++i+llG    GKt il ++ ++e ++ +v T+      ++l+    +n+++++wD  Gqe+   l   Y+++ d+ + v D +d e +++ ++ +++l +    +++ + + +NK Dl+++      +++   +++ +      + +sa +++gl+++++ ls+ 
   MMETSP0890-20130614|867_1   7 FKIVLLGEGRVGKTSILLRYVKGEYSDkQVSTLQASYldRRLSLpggNNVQLSIWDTAGQERFHALGPIYYRDADGAMLVYDITDYESFKKVRKWVRELRQIV-GADICITIAGNKVDLEKQRAVPAEEATSYAQSVGA----DHVYTSAKQNKGLDDAFTALSQR 167
                 79******************9998876377888776522455558889********************************************99999876654.5788999********98776666666666666663....33568899999999999988875 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.8e-09   3.8e-06       1     124 [.       8     125 ..       8     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.8e-09
  PF04670.7   1 klLLmGksgsGKtSmr.siiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqy.speakvfvlihKmDli 124
                k++L+G+++ GKtS+    +  +y+ +++ +L+a+   ++ ++   +n++l++wD+ Gqe+f +          +++ +  + V Di+  ++ e+++k ++ ++ l+q+   ++++ +  +K+Dl 
  MMETSP0890-20130614|867_1   8 KIVLLGEGRVGKTSILlRYVKGEYSDKQVSTLQASYLDRRLSLPGGNNVQLSIWDTAGQERFHAL-----GPIYYRDADGAMLVYDIT--DY-ESFKKVRKWVRELRQIvGADICITIAGNKVDLE 125
                89************962667789************99889999999*************999887.....355666666666677777..53.456677777777776524566777766777755 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.5e-08   8.8e-05      66     184 ..      52     166 ..      13     170 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.5e-08
                 .ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-....S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHH CS
  PF00009.22  66 etkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG....vepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaive 184
                  +++ ++++ Dt G + F +      r +Dga+lv d ++        +  + lr++   ++ i+++ NK+D+ ++++    e     + ++++ +       v +Sa++++g+d+ + a+ +
   MMETSP0890-20130614|867_1  52 GGNNVQLSIWDTAGQERFHALGPIYYRDADGAMLVYDITDYesfkKVRKWVRELRQIVGADICITIAGNKVDLEKQRAVPAEEAT--SYAQSVGAD------HVYTSAKQNKGLDDAFTALSQ 166
                 78999**********************************876665344445557888889999*********9877765444444..465566444......589999999999987777765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.2e-06    0.0058       1     102 [.       8     105 ..       8     135 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.2e-06
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESE..EEE......ETTEEEEEE---SSSHHHHHHHHHHHHHHHHHH..CTSSEEEEEEETTS..HHHHHHHHHHHHH CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdite..nev......kkekiilvDtPGiiegasedkeiegikkylekv..eradvlllvvdasa..vlkeadkellnel 102
                 +++++G+  vGK++++ + +   + + sd++  T++  +  +        ++ ++ ++Dt+G            ++  +l  +  ++ad+++lv d+++    k ++++ ++el
   MMETSP0890-20130614|867_1   8 KIVLLGEGRVGKTSILLRYV---KGEYSDKQVSTLQASYldR-RlslpggNNVQLSIWDTAGQE----------RFH-ALGPIyyRDADGAMLVYDITDyeSFK-KVRKWVREL 105
                 589*****************...4578999999999955342.2466553333457******32..........222.22222248888888888855433221.222333443 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.048        66       2      17 ..       8      23 ..       7      40 .. 0.86
   2 !   11.8   0.0   6.6e-05      0.09     100     177 ..     107     184 ..      86     196 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.048
                EEEEE--TT---HHHH CS
  PF02421.13  2 tvalvGnpnvGKttlf 17
                +++l+G+  vGKt+++
   MMETSP0890-20130614|867_1  8 KIVLLGEGRVGKTSIL 23
                799**********987 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 6.6e-05
                 HHHHTT-SEEEEEETHHHHHC---EB-.HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX..XXX.HHHH CS
  PF02421.13 100 qllelgvpvvvalnmiDeaekkgikid.lkkLselLgvpvvktvarkkkgieelleaiievaekeekekkllkyseele 177
                 q++  ++ + +a n++D  +++ +  + +++ ++++g + v t+a+++kg+++ ++a+ + + +++++k+  k +++ +
   MMETSP0890-20130614|867_1 107 QIVGADICITIAGNKVDLEKQRAVPAEeATSYAQSVGADHVYTSAKQNKGLDDAFTALSQRMAQQRSKKE-SKAPTKQR 184
                 77778888999999***9999988775156799*************************887777666554.44444444 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.065       5      63 ..       8      70 ..       5     130 .. 0.81
   2 ?   -2.0   0.1       1.2   1.6e+03     123     149 ..     159     185 ..     149     200 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-05
               EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-......-----EEEE----GGGG CS
  PF09439.5  5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv...ksekgkkltliDfPGheklr 63
               +++l+G    GKTs++ r  ++++ + ++S  ++s  ++     + ++ +l + D  G+e++ 
  MMETSP0890-20130614|867_1  8 KIVLLGEGRVGKTSILLRYVKGEYSDKQVSTlQASYLDRRlslPGGNNVQLSIWDTAGQERFH 70
               6899**************************977766655545456777788888999998875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
                TSTT---HHHHHHHHHHHHHHHHHHHH CS
  PF09439.5 123 elflakspklikdaLEkElnkiierrs 149
                + f+a s+++ ++   kE +  +++rs
  MMETSP0890-20130614|867_1 159 DAFTALSQRMAQQRSKKESKAPTKQRS 185
                445555555555555555444444443 PP

>> PF00372.14  Hemocyanin, copper containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.065     160     217 ..      84     143 ..      28     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-05
                 ----------.HHHHHHHHHHHHHHHH---EE-----EE---S----..-----TTTT-T CS
  PF00372.14 160 levedkenvevvrklddveerlleaitkgvieasdgkkidlkkeegi..eilgsliessn 217
                 + v d  ++e  +k+ ++ + l++++  +  ++  g+k+dl+k+ ++  e   s+ +s++
   MMETSP0890-20130614|867_1  84 MLVYDITDYESFKKVRKWVRELRQIVGADICITIAGNKVDLEKQRAVpaEEATSYAQSVG 143
                 5677889999999******************************99973355566666644 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00099       1.3       3     141 ..       8     164 ..       6     166 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00099
  PF10662.4   3 killiGkvgaGKTt.Ltqalkgeel.kykkTQaielseeviDtPGeY.len.......rrlysali.vtaadadvialvqdateeesvfppgfaslfnkpviG...iiT....kidlaedee.nielveelLkaaGaekifevsavekegieellkyl 141
                ki+l+G+  +GKT+ L + +kge   k  +T + ++ ++ +  PG   ++        ++  +al  ++  dad  +lv+d+t+ es  +        ++++G    iT    k+dl ++++   e + ++ ++ Ga++++ +sa +++g+++ ++ l
  MMETSP0890-20130614|867_1   8 KIVLLGEGRVGKTSiLLRYVKGEYSdKQVSTLQASYLDRRLSLPGGNnVQLsiwdtagQERFHALGpIYYRDADGAMLVYDITDYESFKKVRKWVRELRQIVGadiCITiagnKVDLEKQRAvPAEEATSYAQSVGADHVY-TSAKQNKGLDDAFTAL 164
                788888888888883344555543323334444455555556666431332111111122234443245568888888888887776655555555556666644324444558888844331346677788888999988.5888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       914  (0.066852); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.62
# Mc/sec: 815.53
//
Query:       MMETSP0890-20130614|869_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-25   87.7   1.2    3.2e-12   46.1   0.0    1.7  2  PF13424.1  Tetratricopeptide repeat
    2.2e-16   59.0   1.0    1.2e-13   50.3   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.3e-07   30.7   0.4    1.6e-07   30.4   0.2    1.2  1  PF00515.23 Tetratricopeptide repeat
    1.9e-06   27.2   0.6    2.4e-06   26.9   0.4    1.2  1  PF07719.12 Tetratricopeptide repeat
      7e-06   25.3   0.1    9.1e-06   24.9   0.0    1.2  1  PF13176.1  Tetratricopeptide repeat
    1.7e-05   24.2   0.0    2.1e-05   23.9   0.0    1.2  1  PF13414.1  TPR repeat
    0.00093   19.6   0.0     0.0011   19.4   0.0    1.1  1  PF13432.1  Tetratricopeptide repeat
     0.0016   18.7   0.0     0.0019   18.5   0.0    1.3  1  PF13428.1  Tetratricopeptide repeat
     0.0074   15.1   0.0     0.0081   15.0   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.065   13.3   0.0    2.1  2  PF13431.1  Tetratricopeptide repeat
      0.015   14.9   0.0      0.021   14.4   0.0    1.2  1  PF13181.1  Tetratricopeptide repeat
      0.045   14.0   0.1      0.089   13.1   0.0    1.6  2  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.8e-15   3.2e-12      33      77 ..       3      48 ..       2      49 .. 0.95
   2 !   45.8   0.1   3.5e-15   3.9e-12       1      46 [.      13      59 .]      13      59 .] 0.97

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2.8e-15
  PF13424.1 33 el.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
               e+  ++lg++hp +a+ lnnla l++++g+ydeA+++ e+Al+i+e
  MMETSP0890-20130614|869_1  3 EIgEKTLGPNHPHVATRLNNLAALLEEQGKYDEAKPLCERALRIFE 48
               677899**************************************98 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 3.5e-15
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdta 46
               hp++at lnnla +l+++g+ydeA  l+e+al +  ++lg++hp +a
  MMETSP0890-20130614|869_1 13 HPHVATRLNNLAALLEEQGKYDEAKPLCERALRIfEEKLGPNHPHVA 59
               89********************************999*******987 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0022       2.5      30      42 .]       3      15 ..       2      15 .. 0.85
   2 !   50.3   0.1     1e-16   1.2e-13       1      42 []      16      57 ..      16      57 .. 0.98

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0022
  PF13374.1 30 airrrllGddHPd 42
               +i ++ lG++HP+
  MMETSP0890-20130614|869_1  3 EIGEKTLGPNHPH 15
               567999******6 PP

  == domain 2    score: 50.3 bits;  conditional E-value: 1e-16
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a+ lnnLA +l ++g+y+eA +l e+al i ++ lG++HP+
  MMETSP0890-20130614|869_1 16 VATRLNNLAALLEEQGKYDEAKPLCERALRIFEEKLGPNHPH 57
               79***************************************6 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   1.4e-10   1.6e-07       4      31 ..      20      47 ..      17      50 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.4e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALeln 31
                l+nl++++ ++gkydeA   +e+AL++ 
   MMETSP0890-20130614|869_1 20 LNNLAALLEEQGKYDEAKPLCERALRIF 47
                89***********************996 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.4   2.1e-09   2.4e-06       4      32 ..      20      48 ..      17      50 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.1e-09
                HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleldP 32
                l+nl+ +++++g+y+eA+ ++e+Al+++ 
   MMETSP0890-20130614|869_1 20 LNNLAALLEEQGKYDEAKPLCERALRIFE 48
                89************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0     8e-09   9.1e-06       2      30 ..      20      48 ..      20      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 8e-09
  PF13176.1  2 llnLarlysrlgdyekAielyeraLaltk 30
               l+nLa l +++g+y++A  l+eraL++ +
  MMETSP0890-20130614|869_1 20 LNNLAALLEEQGKYDEAKPLCERALRIFE 48
               89*********************775544 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.8e-08   2.1e-05      37      67 ..      17      46 ..       6      57 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.8e-08
  PF13414.1 37 aelyynlAlaylklgkdyeeAledyekAlel 67
               a  ++nlA++++++g +y+eA   +e+Al++
  MMETSP0890-20130614|869_1 17 ATRLNNLAALLEEQG-KYDEAKPLCERALRI 46
               336788888888888.588888888888876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.4e-07    0.0011      29      63 ..      15      54 ..       7      57 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.4e-07
  PF13432.1 29 eaaeallllaeallrlgrldeAaallraal.....alaPd 63
               + a  l +la +l ++g++deA  l ++al     +l+P+
  MMETSP0890-20130614|869_1 15 HVATRLNNLAALLEEQGKYDEAKPLCERALrifeeKLGPN 54
               5555666666666666666666666666665555555555 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.7e-06    0.0019       5      32 ..      21      48 ..      10      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.7e-06
  PF13428.1  5 lalarallalGdpdeAiallrralalaP 32
                 la++l+++G +deA  l++ral+ + 
  MMETSP0890-20130614|869_1 21 NNLAALLEEQGKYDEAKPLCERALRIFE 48
               479*********************9654 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.1e-06    0.0081      36      77 ..      13      54 ..       8      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.1e-06
  PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhps 77
               +P     L +l+ +++eqg++ +A  l+eraL i+e+ + p+
  MMETSP0890-20130614|869_1 13 HPHVATRLNNLAALLEEQGKYDEAKPLCERALRIFEEKLGPN 54
               5655666999**************************988776 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.7e-05     0.065      16      33 ..      20      37 ..       9      38 .. 0.91
   2 ?    0.3   0.0      0.86   9.8e+02       1       9 [.      39      47 ..      39      57 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.7e-05
  PF13431.1 16 ynnLAelllnnGdleeAe 33
               +nnLA ll ++G+++eA+
  MMETSP0890-20130614|869_1 20 LNNLAALLEEQGKYDEAK 37
               68**************97 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.86
  PF13431.1  1 lyekaleld 9 
               l+e+al++ 
  MMETSP0890-20130614|869_1 39 LCERALRIF 47
               689999875 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.8e-05     0.021       4      30 ..      20      46 ..      16      48 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-05
               TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
               ++nl+ ++++ G+yd+Ak   e+al +
  MMETSP0890-20130614|869_1 20 LNNLAALLEEQGKYDEAKPLCERALRI 46
               789*******************99976 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.8e-05     0.089       5      26 .]      21      42 ..      17      42 .. 0.89
   2 ?   -0.8   0.0       2.4   2.8e+03      18      26 .]      41      49 ..      41      49 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.8e-05
               ---HHHHHH-------HHHHHT CS
  PF07721.9  5 laLArallalGdldeAraller 26
                +LA +l ++G +deA  l er
  MMETSP0890-20130614|869_1 21 NNLAALLEEQGKYDEAKPLCER 42
               59**************999887 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.4
               ---HHHHHT CS
  PF07721.9 18 deAraller 26
               ++A++++e+
  MMETSP0890-20130614|869_1 41 ERALRIFEE 49
               579999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.96
# Mc/sec: 147.28
//
Query:       MMETSP0890-20130614|865_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.83
# Mc/sec: 285.83
//
Query:       MMETSP0890-20130614|877_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   59.9   0.0      3e-16   58.8   0.0    1.6  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   2.2e-20     3e-16       1      45 [.      94     141 ..      94     143 .] 0.94

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 2.2e-20
  PF08373.5   1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnel 45 
                ie+dGp+h+++ + +++   g tk+K r+L++lGw ++++pyfeW  l
  MMETSP0890-20130614|877_1  94 IEVDGPSHYLKCNgKRPSenGRTKFKSRLLSKLGWTIVHVPYFEWDAL 141
                9********99887888899*************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.34s 00:00:00.74 Elapsed: 00:00:00.94
# Mc/sec: 364.55
//
Query:       MMETSP0890-20130614|879_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-22   79.8   0.0    1.4e-22   79.4   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   9.9e-27   1.4e-22       3      93 ..      58     149 ..      56     150 .. 0.95

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 9.9e-27
                 B---CT-EEEEEEEEEE..---EEEETTT.TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEE CS
  PF00254.23   3 kkakegdtVtvhyegkle.dgtvfdssys.rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevel 93 
                 + +++g+tVtvh +g ++  g++f s+ +  +kpf+++ G g vi g+++g +gmk Ge r+l ip +++Yg++g     ipp+ tl f+ e+
   MMETSP0890-20130614|879_1  58 S-VTKGATVTVHATGVVKeTGKKFWSTKDpGQKPFTYTAGVGGVITGWDQGCLGMKLGEIRELVIPASEGYGANGFPAWGIPPGGTLNFTLEC 149
                 4.89*************978*******669**********************************************9999*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 488.86
//
Query:       MMETSP0890-20130614|882_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 284.57
//
Query:       MMETSP0890-20130614|880_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 1209.87
//
Query:       MMETSP0890-20130614|874_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   16.3   0.0      0.014   15.1   0.0    1.6  1  PF09273.6 Rubisco LSMT substrate-binding


Domain annotation for each model (and alignments):
>> PF09273.6  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-06     0.014       1      64 [.     282     347 ..     282     378 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-06
                --TTSTTHHHHHHHHHH----SEEEEEEETTS-..-----HHHHHHHH----GGGGGSGGGTTT-- CS
  PF09273.6   1 lsendpladdKaqllerlglsetetftlrlngp..iskeLLaylRllllkeeelkelkslaesavi 64 
                l+endpl+++K+ +l+ +gl   ++ft++ +++   +   L +lR+ + ++++ +   +   ++++
  MMETSP0890-20130614|874_1 282 LHENDPLLEAKRRILRTAGLGLFGIFTIKKDQNpaHPSSQLDALRIAVASKQDIDLMQAALGKDYC 347
                689*****************************999888889*****99999998877776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.84
# Mc/sec: 1372.20
//
Query:       MMETSP0890-20130614|883_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.6   0.3     0.0038   16.6   0.2    1.5  1  PF02845.11 CUE domain
     0.0066   16.1   0.0      0.014   15.1   0.0    1.6  1  PF00627.26 UBA/TS-N domain
     0.0096   15.5   0.1      0.012   15.2   0.0    1.2  1  PF01217.15 Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   8.3e-07    0.0038      14      36 ..      18      40 ..      18      43 .. 0.96

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 8.3e-07
                TS-HHHHHHHHHHSTTTHHHHHH CS
  PF02845.11 14 dldeevIravLrasngnvEaain 36
                d+de++++  L  +n+n+E+ai+
   MMETSP0890-20130614|883_1 18 DWDESTLKVILLKNNNNLEQAIE 40
                8*********************8 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-06     0.014      13      35 ..      16      40 ..       9      42 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-06
                -..--HHHHHHHHHHTTTSHHHHHH CS
  PF00627.26 13 G..fsreeakkALratnnnvErAve 35
                G  +++++ k  L ++nnn+E+A+e
   MMETSP0890-20130614|883_1 16 GedWDESTLKVILLKNNNNLEQAIE 40
                555999******************8 PP

>> PF01217.15  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-06     0.012     102     134 ..      27      59 ..      10      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHHHHHHTTB----BS---HHHHHHH CS
  PF01217.15 102 dlvfnfekvylildEivsgGeiletskkevlkr 134
                  l+ n ++++++++E++++G+i++ ++++++++
   MMETSP0890-20130614|883_1  27 ILLKNNNNLEQAIEEVIDAGSIQNWNQQQLIAQ 59 
                 578999************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 453.60
//
Query:       MMETSP0890-20130614|891_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 975.36
//
Query:       MMETSP0890-20130614|901_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-32  108.8   0.0    3.6e-15   55.0   0.0    2.0  2  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.046   13.2   0.0          7    6.3   0.0    2.8  3  PF07892.6 Protein of unknown function (DUF1667)
       0.13   12.0   0.2        4.2    7.2   0.0    2.7  3  PF03533.9 SPO11 homologue


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   6.1e-18   2.8e-14       1      49 []       4      52 ..       4      52 .. 0.99
   2 !   55.0   0.0   7.8e-19   3.6e-15       1      43 [.      54      96 ..      54      98 .] 0.97

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 6.1e-18
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
               DrEivl+av++ g alky+s  L+nD+ ivl+Av q+g+al++a  eL+
  MMETSP0890-20130614|901_1  4 DREIVLAAVTRGGGALKYASQGLRNDRAIVLAAVTQDGCALRFAGQELK 52
               9********************************************9997 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 7.8e-19
  PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsy 43
               DrEivl+av+++g+al+y++ee+knD+ei l Av ++gsal+ 
  MMETSP0890-20130614|901_1 54 DREIVLAAVTRDGEALEYANEEFKNDREIFLIAVTKDGSALEN 96
               9***************************************986 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.026   1.2e+02       4      28 ..      19      43 ..      14      47 .. 0.86
   2 ?    2.3   0.0     0.026   1.2e+02       5      26 ..      45      66 ..      41      69 .. 0.85
   3 ?    6.3   0.0    0.0015         7       4      28 ..      69      93 ..      66      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.026
  PF07892.6  4 eeYakkeltnpkriltstVkvegge 28
                +Ya + l n + i+ + V  +g+ 
  MMETSP0890-20130614|901_1 19 LKYASQGLRNDRAIVLAAVTQDGCA 43
               68**************999887765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.026
  PF07892.6  5 eYakkeltnpkriltstVkveg 26
                +a +el++ + i+ + V  +g
  MMETSP0890-20130614|901_1 45 RFAGQELKDDREIVLAAVTRDG 66
               799************9998766 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0015
  PF07892.6  4 eeYakkeltnpkriltstVkvegge 28
                eYa++e++n + i+   V  +g+ 
  MMETSP0890-20130614|901_1 69 LEYANEEFKNDREIFLIAVTKDGSA 93
               69*************9999877765 PP

>> PF03533.9  SPO11 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00093       4.2      19      31 ..       5      17 ..       2      23 .. 0.90
   2 ?   -1.2   0.0      0.37   1.7e+03      18      27 ..      29      38 ..      24      43 .. 0.77
   3 ?    1.5   0.0     0.055   2.5e+02      18      30 ..      54      66 ..      49      69 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00093
  PF03533.9 19 RaSLLAalrRGgg 31
               R+  LAa+ RGgg
  MMETSP0890-20130614|901_1  5 REIVLAAVTRGGG 17
               8999********8 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.37
  PF03533.9 18 HRaSLLAalr 27
                Ra  LAa+ 
  MMETSP0890-20130614|901_1 29 DRAIVLAAVT 38
               6999999986 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.055
  PF03533.9 18 HRaSLLAalrRGg 30
                R+  LAa+ R g
  MMETSP0890-20130614|901_1 54 DREIVLAAVTRDG 66
               69999****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 391.40
//
Query:       MMETSP0890-20130614|900_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-40  135.1   0.1    1.4e-39  134.4   0.0    1.3  1  PF01873.12 Domain found in IF2B/IF5
     0.0025   17.9   0.2     0.0064   16.6   0.1    1.7  1  PF14354.1  Restriction alleviation protein Lar
  ------ inclusion threshold ------
      0.023   14.3   0.2      0.069   12.7   0.2    1.7  1  PF07234.6  Protein of unknown function (DUF1426)
      0.086   12.3   0.2       0.43   10.0   0.0    2.1  2  PF07699.8  GCC2 and GCC3
       0.24   11.5   3.1         19    5.4   0.4    3.1  2  PF09190.6  DALR domain
        1.8    7.1   4.3        2.6    6.6   3.0    1.2  1  PF06025.7  Domain of Unknown Function (DUF913)
        3.4    8.3  20.6        1.9    9.1   6.6    2.3  2  PF08576.5  Eukaryotic protein of unknown function (DUF1764)


Domain annotation for each model (and alignments):
>> PF01873.12  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   7.2e-43   1.4e-39       5     124 ..     124     243 ..     118     244 .. 0.94

  Alignments for each domain:
  == domain 1    score: 134.4 bits;  conditional E-value: 7.2e-43
                 SS-TTS----.----S-----B--.--EEES-HHHHHHHH-SSHHHHHHHHHHH-------B-.--EEE----SSSHHHHHHHHHHTHHHHHT--SS-CCEEEEE..---CEEEEC----EE CS
  PF01873.12   5 knpekvaedkkrfkipklevkieGkkkTvisNfsdiakalnRdpeyllkyllaelgtagsldgkdrlvvkgkfeekkledvldkyikkyVlCkeCkspeTelike..erlillkCkaCgarr 124
                 +npe  a +k+r+ +++++ ++ G+kkT  +Nf++i+k+lnR+pe+l ++++aelgt+gs+dg +rlv++gk+ +k +e++l+kyi +yV+C+ C+sp+T+l+k+   rl++++C+ Cg++r
   MMETSP0890-20130614|900_1 124 NNPE-LA-EKRRHSLKPPQLMRVGTKKTLWVNFQEICKMLNRSPEHLFQFFMAELGTEGSIDGTQRLVIRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTKDsvSRLYFIHCQDCGSSR 243
                 4444.44.457**********************************************************************************************999***********986 PP

>> PF14354.1  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.3e-06    0.0064       5      49 ..     212     259 ..     207     265 .] 0.67

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.3e-06
  PF14354.1   5 pCPfCGsaevleedeegldegdvyyvsChdCga......desvseadiadd 49 
                 C  C s++++ ++++ ++    y+++C+dCg+      +   ++a++ +d
  MMETSP0890-20130614|900_1 212 TCQMCRSPNTTLTKDSVSRL---YFIHCQDCGSsrsvapIRAGFHATSRAD 259
                6999*888888888777654...********99777444333333333333 PP

>> PF07234.6  Protein of unknown function (DUF1426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.5e-05     0.069      38      67 ..     195     225 ..     187     233 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.5e-05
  PF07234.6  38 vpkyikelvr.ylveyltrrrvwmqrtqlte 67 
                vpkyi  l+r y+vey+t +     +t lt+
  MMETSP0890-20130614|900_1 195 VPKYIESLLRkYIVEYVTCQMCRSPNTTLTK 225
                9*****98855*******9988888887775 PP

>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022      0.43      24      44 ..     209     229 ..     191     231 .. 0.87
   2 ?   -0.9   0.0      0.57   1.1e+03      28      35 ..     236     243 ..     233     251 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00022
  PF07699.8  24 gqkkCiaCppgttTskkgsks 44 
                ++++C++C + +tT+ k s s
  MMETSP0890-20130614|900_1 209 EYVTCQMCRSPNTTLTKDSVS 229
                6889*************9987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.57
  PF07699.8  28 CiaCppgt 35 
                C+ C++ +
  MMETSP0890-20130614|900_1 236 CQDCGSSR 243
                78887765 PP

>> PF09190.6  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.028        55      16      36 ..      19      39 ..      16      49 .. 0.75
   2 ?    5.4   0.4    0.0097        19      16      39 ..      51      74 ..      46     129 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.028
  PF09190.6 16 lavLFdLakeiNkaekgedka 36
               +a++FdL+k+  k++k+e ++
  MMETSP0890-20130614|900_1 19 VAAVFDLSKKKKKKKKKEGEE 39
               699*******99955544444 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0097
  PF09190.6 16 lavLFdLakeiNkaekgedkaals 39
               +a++FdL k+  k++k++d +++ 
  MMETSP0890-20130614|900_1 51 VAAMFDLTKKKKKKKKKDDDDDAT 74
               5899***99999944444333332 PP

>> PF06025.7  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.0    0.0013       2.6     254     348 ..      24     125 ..      14     134 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0013
  PF06025.7 254 llgrtkaasagigakvkvedsqgkpvisgds...........sksetaepdeeaeaeataaesvelseatkeepdkvesee..ekedaeeltvtdyianvsrfLeafl 348
                 l ++k++ ++++ ++  + ++g  v    +           +k++++++d+ ++a+a+ +++ ++++++ ++ d+++s++  +++  +++t+ +++  v+ +L+a++
  MMETSP0890-20130614|900_1  24 DLSKKKKKKKKKEGEE--DAPNGGDV----NaevaamfdltkKKKKKKKKDDDDDATAEITKENQVEDVSMDKSDDKNSTPnqADRRYANYTYQQMLDRVVGILQANN 125
                4444444443333333..33333333....234457888876444444444444455545555555555555555545555005566778899999999999999876 PP

>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.6     0.013        26       6      36 ..       9      39 ..       2      46 .. 0.79
   2 ?    9.1   6.6   0.00099       1.9       6      71 ..      41     107 ..      36     114 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.013
  PF08576.5  6 akeekeekkdidaifseakkkekkkkekaee 36
               ++++ke+ +++ a+f+ +kkk+kkkk++ ee
  MMETSP0890-20130614|900_1  9 EEAQKEDAEEVAAVFDLSKKKKKKKKKEGEE 39
               5678999999*******99999999887744 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00099
  PF08576.5   6 akeekeekkdidaifseakkkekkkkekaee.kakkpkatkkkkkkkkkkeekkeveeekkrrrted 71 
                a +  + + ++ a+f+ +kkk+kkkk+ +++ ++++ +++++ +  + +k+++k++++++  rr+++
  MMETSP0890-20130614|900_1  41 APNGGDVNAEVAAMFDLTKKKKKKKKKDDDDdATAEITKENQVEDVSMDKSDDKNSTPNQADRRYAN 107
                5667788999*********999999988877533333333344455555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1747  (0.127779); expected 273.4 (0.02)
Passed bias filter:                      714  (0.0522235); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.83
# Mc/sec: 765.10
//
Query:       MMETSP0890-20130614|905_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-15   54.7   0.0    1.1e-14   54.5   0.0    1.0  1  PF02597.15 ThiS family


Domain annotation for each model (and alignments):
>> PF02597.15  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   7.8e-19   1.1e-14       1      78 []       6      84 .]       6      84 .] 0.97

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 7.8e-19
                EEECTEECHHCC..TEEEEESSHCBHHHHHHHHCCTTCHHHHTSSTCEEEETTEEEGTCTTTSB--SSSEEEEEEEB--- CS
  PF02597.15  1 vllfaelrelag..eeelelaegstvaelleaLgerypelaelerrvavavNgeivprlwldtelkdgDevailppVaGG 78
                vllfa++relag    ele+++g + + l++ L+e+yp l +     a+a+N+e+v+   +d elk+gDe+a++pp++GG
   MMETSP0890-20130614|905_1  6 VLLFASARELAGtgACELEVPSGCKASLLRKLLAEKYPLLGATALEAAIAINQEYVSV-DDDPELKAGDEIALIPPISGG 84
                89************************************99998899***********9.88******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.75
# Mc/sec: 268.39
//
Query:       MMETSP0890-20130614|902_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.5   0.0       0.18   10.8   0.0    1.2  1  PF10920.3 Protein of unknown function (DUF2705)


Domain annotation for each model (and alignments):
>> PF10920.3  Protein of unknown function (DUF2705)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.4e-05      0.18      13      68 ..     111     168 ..     106     176 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.4e-05
  PF10920.3  13 ilflaalsaydfnkkvlp..ildGipvslathvetrllllwylpivalsfyisGsikd 68 
                ++ ++al++++ +   +p  ++  +p  l ++    + ++w++ i++l   i G+i +
  MMETSP0890-20130614|902_1 111 LFSKTALVSFNTKLCHYPteLVRHVPCVLLAQACSTNCFMWFVAILSLGILIRGEIAE 168
                33456889***9999999556899******************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.66
# Mc/sec: 1180.02
//
Query:       MMETSP0890-20130614|909_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-34  117.3  13.7    1.2e-33  116.2   9.5    1.5  1  PF03649.8  Uncharacterised protein family (UPF0014)
    6.7e-13   48.9   0.0    1.2e-12   48.1   0.0    1.4  1  PF00005.22 ABC transporter
    4.5e-06   26.7   0.0      0.004   17.0   0.0    2.2  2  PF13304.1  AAA domain
    0.00018   21.5   0.0    0.00053   19.9   0.0    1.8  1  PF13401.1  AAA domain
     0.0003   20.3   0.9      0.021   14.4   0.1    2.7  2  PF13245.1  Part of AAA domain
    0.00088   18.4   0.5      0.026   13.6   0.3    2.0  1  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0044   16.3   1.8      0.014   14.7   0.9    2.1  2  PF13555.1  P-loop containing region of AAA domain
     0.0066   17.1   0.0      0.015   15.9   0.0    1.8  1  PF13207.1  AAA domain
     0.0094   15.4   4.5      0.032   13.7   1.4    2.5  3  PF13604.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.1   0.1        0.1   11.8   0.0    2.2  2  PF13481.1  AAA domain
      0.014   15.1   0.4      0.032   13.9   0.3    1.5  1  PF01935.12 Domain of unknown function DUF87
      0.014   15.1   0.1       0.22   11.3   0.0    2.6  1  PF13558.1  Putative exonuclease SbcCD, C subunit
      0.028   14.6   0.1      0.049   13.8   0.1    1.3  1  PF13476.1  AAA domain
      0.029   13.8   0.0      0.057   12.8   0.0    1.5  1  PF01443.13 Viral (Superfamily 1) RNA helicase
      0.038   13.1   0.0      0.067   12.3   0.0    1.4  1  PF12846.2  AAA-like domain
       0.04   12.9   0.0       0.07   12.1   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
      0.041   14.0   0.0      0.092   12.9   0.0    1.6  1  PF13238.1  AAA domain
      0.045   13.9   0.6      0.095   12.9   0.4    1.6  1  PF13191.1  AAA ATPase domain
      0.046   13.4   0.0      0.095   12.4   0.0    1.6  1  PF13671.1  AAA domain
      0.051   13.3   0.0       0.35   10.6   0.0    2.2  2  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF03649.8  Uncharacterised protein family (UPF0014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   9.5   1.8e-36   1.2e-33      17     239 ..      15     240 ..       3     250 .. 0.87

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.8e-36
  PF03649.8  17 ilvvvailiaqkeklalekkilyasgraiiqliivGy.vlkyifslddavavllvvavlltlaayvarkrinlkakalls.iflfitlgastiisl.avliisksvkfePiyviPlaGmilGntmnavslalekladavkserdeieeklalGatpkqalasfirdairaaliPtvnraksvGlvslPGmlvGlvlaGadPvkaakyqilimflilstavlstilv 239
                +l+v    ++   +l++e     a+ r+ iq++i+ y vl  +f       +l+ +a ++ laa   ++r  +    + +  +l+i  ga+++++  ++l+++ + ++e +y+iP aGmilGn + a  l++e     +++ +d++  +l  Ga  ++a  + ir ++ +al P  n + ++Glvs+PGm++G+++aG  P++a  yq++im+l+++++ ++ +++
  MMETSP0890-20130614|909_1  15 LLMVWVSFVSWLLNLGIEWANGIAGLRCCIQIVILAYfVLEPLFDAKTYNWILVYLAAVVLLAARESMNRLSFTYVGIRAhYVLAIFAGAASVLTYtVILVLELTPWWEAQYMIPTAGMILGNQVTATALVVEAYLRDLHDAPDRVDLRLQRGASIIEAAMPTIRSSLYTALTPSFNMMTVMGLVSMPGMMSGQMMAGQSPLNAGLYQVMIMYLLMTASFIACVVL 240
                34444444555568888888888999*********9735889*****99999999***************998876654415688889999999985667889999************************************************************************************************************999888887765 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   1.8e-15   1.2e-12       1     118 []     419     561 ..     419     561 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 1.8e-15
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------...--BHHHHHH----S--.......................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx..xxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllf..peltvrenldmakeekk.......................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ST +++l++  +  +ge+++++     ++++  ++r  + y++qd +      +++ + l++ + +                          d+  ++++e+ gld ++ +++ +tLSgG++qr +l  al+ kp++llLDEPt+
   MMETSP0890-20130614|909_1 419 STTMRVLARTARRLSGEMYLEDV--PASKISGPTWRtrVIYVSQDRPTIpgSPKDLYDALRAYRAQVArakkyaaqvyslrdhddestqlyPDDAPTKIAEQWGLDPAKFHQPWNTLSGGEAQRASLSIALALKPEVLLLDEPTS 561
                 99*******************62..3333444444445***********7777777676665544433677777789999999999999998888899999******77778*******************************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0044         3       1      24 [.     407     430 ..     407     462 .. 0.81
   2 !   17.0   0.0   5.8e-06     0.004     229     298 ..     525     588 ..     472     590 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0044
  PF13304.1   1 lnviiGpNgsGKSnlLkaldflfr 24 
                ++vi+G  g+GKS+ +++l+  +r
  MMETSP0890-20130614|909_1 407 VTVITGVTGAGKSTTMRVLARTAR 430
                79*****************87653 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 5.8e-06
  PF13304.1 229 ggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298
                ++  p+  lS G+ + ++l  al+  +    vll+DEp + L+ k + ++    k++  +g+ +i++THS
  MMETSP0890-20130614|909_1 525 KFHQPWNTLSGGEAQRASLSIALALKP---EVLLLDEPTSALDVKTTLKVE---KNILATGAAVILVTHS 588
                66779999********99999999988...99************9994444...44444899*******9 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.7e-07   0.00053       4      59 ..     405     477 ..     401     506 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.7e-07
  PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae................karvvfveapast...spkellqkll 59 
                  ++v+tG +G+GK+t++r lar++ + +   e                ++rv++v    +t   spk+l+ +l 
  MMETSP0890-20130614|909_1 405 GEVTVITGVTGAGKSTTMRVLARTARRLSG--EmyledvpaskisgptwRTRVIYVSQDRPTipgSPKDLYDALR 477
                5689*******************9855444..256999*********9999999999999999999999998764 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.1e-05     0.021       6      36 ..     402     430 ..     398     460 .. 0.82
   2 ?    3.5   0.0     0.076        52      35      60 ..     576     598 ..     565     613 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.1e-05
  PF13245.1   6 alagnpllvvtGgPGtGKTttlaaiiaalla 36 
                a++   ++v+tG  G+GK+ t  ++ a+ ++
  MMETSP0890-20130614|909_1 402 AAK-GEVTVITGVTGAGKS-TTMRVLARTAR 430
                566.99*************.88888888773 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.076
  PF13245.1  35 laarekpgrsvllvaptgraakrl.se 60 
                la+    g+ v lv+ + ++akrl s+
  MMETSP0890-20130614|909_1 576 LAT----GAAVILVTHSQEQAKRLaSN 598
                555....889**************444 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   3.8e-05     0.026     136     205 ..     532     595 ..     394     606 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.8e-05
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                 +LSgGe + ++l++ +A++   p+ + llDe  +aLD k + kv + + ++   a +i +++++e+ ++ 
   MMETSP0890-20130614|909_1 532 TLSGGEAQRASLSIALALK---PE-VLLLDEPTSALDVKTTLKVEKNILATG--AAVILVTHSQEQAKRL 595
                 8**************9985...65.5689*******************9998..8999999999887654 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.98   6.7e+02      34      60 ..     378     403 ..     376     405 .. 0.82
   2 !   14.7   0.9   2.1e-05     0.014      21      40 ..     403     422 ..     393     427 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.98
  PF13555.1  34 sGKSTllDAiqtlLvpakkvafNkaan 60 
                +GK  ++ A+  ++  ++  + N aa 
  MMETSP0890-20130614|909_1 378 AGKAVIFQAVDLVIAQTG-LKVNLAAA 403
                8*********99998888.77777765 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.1e-05
  PF13555.1  21 pkgkntlltGasGsGKSTll 40 
                 kg++t++tG +G+GKST +
  MMETSP0890-20130614|909_1 403 AKGEVTVITGVTGAGKSTTM 422
                5799**************87 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-05     0.015       3      32 ..     409     436 ..     407     561 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-05
                --B--TT---HHHHHHHHHHSTEEEEEGGG CS
  PF13207.1   3 aitGppGsGKsTlakeLaerlglpvlsldd 32 
                +itG +G+GKsT ++ La+    + ls ++
  MMETSP0890-20130614|909_1 409 VITGVTGAGKSTTMRVLART--ARRLSGEM 436
                79***************886..34444444 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.33   2.2e+02      28      57 ..     377     406 ..     364     408 .. 0.86
   2 !   13.7   1.4   4.7e-05     0.032      12      44 ..     399     431 ..     389     446 .. 0.85
   3 ?    1.0   0.0      0.36   2.4e+02      96     129 ..     553     587 ..     512     601 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.33
  PF13604.1  28 GtGKttvlkalrealeaagkrvvglAptgk 57 
                 +GK  + +a+  +++++g +v ++A +g+
  MMETSP0890-20130614|909_1 377 NAGKAVIFQAVDLVIAQTGLKVNLAAAKGE 406
                58***********************99876 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4.7e-05
  PF13604.1  12 avltsgdrvavvqGpAGtGKttvlkalrealea 44 
                ++++ +  v v++G+ G+GK+t+++ l++++++
  MMETSP0890-20130614|909_1 399 NLAAAKGEVTVITGVTGAGKSTTMRVLARTARR 431
                56677889******************9998876 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.36
  PF13604.1  96 llvvDE.AgmvdtrqlarlleaaekagakvvlvGD 129
                +l++DE  + +d + + ++ + + ++ga v+lv  
  MMETSP0890-20130614|909_1 553 VLLLDEpTSALDVKTTLKVEKNILATGAAVILVTH 587
                66666634555666666666666666666666643 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015       0.1      31      97 ..     403     483 ..     396     518 .. 0.64
   2 ?    0.5   0.0      0.43   2.9e+02     178     191 ..     577     590 ..     559     593 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00015
  PF13481.1  31 prgsltllaGapgtGKStlalqlaaava..tGepflg.......pvvpepgrVlylsaEds.....eaelrrrlsailaal 97 
                ++g++t+++G +g+GKSt +  la  +   +Ge  l        + ++ + rV+y+s + +     + +l + l+a +a++
  MMETSP0890-20130614|909_1 403 AKGEVTVITGVTGAGKSTTMRVLARTARrlSGEMYLEdvpaskiSGPTWRTRVIYVSQDRPtipgsPKDLYDALRAYRAQV 483
                589***************997777644477555555566555564445677899998888765444444444444444444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.43
  PF13481.1 178 rtgaavllvhHtgK 191
                +tgaav+lv H+  
  MMETSP0890-20130614|909_1 577 ATGAAVILVTHSQE 590
                79*********975 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   4.7e-05     0.032      28      46 ..     410     428 ..     392     436 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.7e-05
  PF01935.12  28 ilgsTGsGKSntvavLlee 46 
                 i g TG+GKS+t++vL + 
   MMETSP0890-20130614|909_1 410 ITGVTGAGKSTTMRVLART 428
                 88**************875 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.22      25      80 ..     525     567 ..     513     573 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00032
  PF13558.1  25 elsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeen 80 
                ++++ ++tlSGGE+   ++l++a+Al            +++ ++LDE++s lD ++
  MMETSP0890-20130614|909_1 525 KFHQPWNTLSGGEA-QRASLSIALAL------------KPEVLLLDEPTSALDVKT 567
                578999********.56666666665............477888888888888776 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   7.1e-05     0.049      18      37 ..     404     423 ..     391     426 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.1e-05
  PF13476.1  18 skgltlItGpNGsGKTTild 37 
                +  +t+ItG +G+GK+T + 
  MMETSP0890-20130614|909_1 404 KGEVTVITGVTGAGKSTTMR 423
                4469*************986 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.4e-05     0.057       1      35 [.     408     440 ..     408     456 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.4e-05
  PF01443.13   1 ivvhGvpGcGKStlirkllrtltvnrptaelrteg 35 
                 +v++Gv G+GKSt  r l+rt  + r + e++ e 
   MMETSP0890-20130614|909_1 408 TVITGVTGAGKSTTMRVLART--ARRLSGEMYLED 440
                 69*****************99..344444555554 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.8e-05     0.067       4      27 ..     408     431 ..     406     501 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.8e-05
  PF12846.2   4 tlilGppGsGKSvllkklvlqlla 27 
                t+i+G +G+GKS++++ l++ + +
  MMETSP0890-20130614|909_1 408 TVITGVTGAGKSTTMRVLARTARR 431
                79***************9876655 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0001      0.07      22      61 ..     392     431 ..     371     460 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.0001
                 HHTT-HHHHHHCTTSBEEEE-------HHHHHHH------ CS
  PF03193.11  22 tkegleelaellkdktsvlvGqSGvGKSsLinallpeldl 61 
                  ++gl+   +  k++++v++G +G+GKS+ + +l+ +++ 
   MMETSP0890-20130614|909_1 392 AQTGLKVNLAAAKGEVTVITGVTGAGKSTTMRVLARTARR 431
                 444555555566789****************999987754 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.092       2      23 ..     409     434 ..     409     502 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
  PF13238.1   2 litGtpGvGKtTlakeLaerl....g 23 
                +itG++G+GK+T+ + La+      g
  MMETSP0890-20130614|909_1 409 VITGVTGAGKSTTMRVLARTArrlsG 434
                69***************765333353 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   0.00014     0.095      15      52 ..     399     434 ..     392     565 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
  PF13191.1  15 alrrvsegsplllvtGpsGiGKSsLlrelakpillerl 52 
                +l+ ++ g+ + ++tG  G GKS+ +r la+++++  +
  MMETSP0890-20130614|909_1 399 NLA-AAKGE-VTVITGVTGAGKSTTMRVLARTARRLSG 434
                556.66677.999***************7777766544 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014     0.095       1      70 [.     407     487 ..     407     513 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
  PF13671.1   1 lvllvGlpGsGKstlaerllkklg............yvrlsqdtlrkrlfgtdqqsktdytrvlkrlyqilnklarkalsag 70 
                ++++ G+ G+GKst  + l++               +  +s +t+r+r+ +  q+++t +    k+ly++l+++ +++++a+
  MMETSP0890-20130614|909_1 407 VTVITGVTGAGKSTTMRVLARTARrlsgemyledvpASKISGPTWRTRVIYVSQDRPTIPG-SPKDLYDALRAYRAQVARAK 487
                67889**********9999755544554544445556667777799999885555554221.22334444444444433333 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00052      0.35       2      27 ..     405     430 ..     404     488 .. 0.84
   2 ?   -0.4   0.0       1.3   8.8e+02      61      97 ..     550     580 ..     531     603 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00052
  PF13173.1   2 rkilvitGpRrvGKttllkqlakell 27 
                ++++vitG+ ++GK+t+++ la++  
  MMETSP0890-20130614|909_1 405 GEVTVITGVTGAGKSTTMRVLARTAR 430
                6899**************99987654 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.3
  PF13173.1  61 kkkylflDEiqevpewedalkslvddgrnldviltGs 97 
                k ++l+lDE + + +++++lk   +      +++tG 
  MMETSP0890-20130614|909_1 550 KPEVLLLDEPTSALDVKTTLKVEKN------ILATGA 580
                5678999999999887777774333......333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       814  (0.0595377); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.11u 0.46s 00:00:01.57 Elapsed: 00:00:00.90
# Mc/sec: 1645.50
//
Query:       MMETSP0890-20130614|910_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-29  101.7   0.0    2.2e-29  101.6   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    4.6e-12   45.4   0.0    2.7e-06   26.9   0.0    2.9  3  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.37   10.2   6.3          4    6.9   0.0    3.7  4  PF01396.14 Topoisomerase DNA binding C4 zinc finger


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   4.8e-33   2.2e-29       1      91 [.       3      93 ..       1      95 [] 0.53

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 4.8e-33
  PF13306.1  1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipss 91
               t+Ig  aF++c++lt+it+p  +++Ig +aF++c sl+++tlp  lt+i +  F++c+slt++t+p  lt+ig +aF +c+sl++i++p  
  MMETSP0890-20130614|910_1  3 TTIGYDAFHGCTSLTQITLPAGLIKIGTEAFYGCCSLTKLTLPVGLTTIRDGTFYGCTSLTQLTLPVGLTTIGHSAFISCTSLTQITLPAG 93
               4555555555555555555555555555555555555555555555555555555555555555555555555555555555555555544 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00023         1      37      56 ..       2      21 ..       1      23 [. 0.76
   2 !   26.9   0.0   5.9e-10   2.7e-06      13      56 ..      25      67 ..      21      69 .. 0.95
   3 !    6.0   0.0     0.002         9      13      32 ..      71      90 ..      69      92 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00023
  PF13855.1 37 lksispeafkgLpsLreLnL 56
               l++i  +af+g++sL+++ L
  MMETSP0890-20130614|910_1  2 LTTIGYDAFHGCTSLTQITL 21
               67788888888888888776 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 5.9e-10
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               l +i+++aF g+ +L++L L    l++i +++f g++sL++L L
  MMETSP0890-20130614|910_1 25 LIKIGTEAFYGCCSLTKLTLP-VGLTTIRDGTFYGCTSLTQLTL 67
               678******************.********************98 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.002
  PF13855.1 13 lkvipdgaFkglsnLkvLdL 32
               l++i+++aF ++++L+ + L
  MMETSP0890-20130614|910_1 71 LTTIGHSAFISCTSLTQITL 90
               67788888888888877655 PP

>> PF01396.14  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.031   1.4e+02      19      25 ..       8      14 ..       3      15 .. 0.79
   2 ?    1.4   0.2     0.044     2e+02      20      24 ..      32      36 ..      26      38 .. 0.75
   3 ?    6.9   0.0   0.00088         4      17      25 ..      52      60 ..      48      61 .. 0.85
   4 ?   -0.1   0.0      0.13   5.9e+02      20      25 ..      78      83 ..      72      84 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.031
  PF01396.14 19 GkFvGCs 25
                  F+GC+
   MMETSP0890-20130614|910_1  8 DAFHGCT 14
                48****8 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.044
  PF01396.14 20 kFvGC 24
                 F+GC
   MMETSP0890-20130614|910_1 32 AFYGC 36
                8**** PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00088
  PF01396.14 17 kkGkFvGCs 25
                + G+F+GC+
   MMETSP0890-20130614|910_1 52 RDGTFYGCT 60
                679*****8 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.13
  PF01396.14 20 kFvGCs 25
                 F++C+
   MMETSP0890-20130614|910_1 78 AFISCT 83
                7****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 373.20
//
Query:       MMETSP0890-20130614|908_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.9   0.1      0.015   14.8   0.1    1.0  1  PF14183.1 YwpF-like protein
      0.059   13.0   0.0      0.064   12.9   0.0    1.1  1  PF11836.3 Protein of unknown function (DUF3356)


Domain annotation for each model (and alignments):
>> PF14183.1  YwpF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   2.3e-06     0.015     102     128 ..       9      35 ..       5      41 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
  PF14183.1 102 lvtkkqdlaeklLeeLveeglsgeeLl 128
                ++++++d++e+l+e L++eg++ ee +
  MMETSP0890-20130614|908_1   9 VMQSRDDMMEELMEGLMDEGMTQEEAK 35 
                56789*****************99854 PP

>> PF11836.3  Protein of unknown function (DUF3356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.4e-06     0.064      48      76 ..      12      41 ..       9      44 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.4e-06
  PF11836.3 48 sardvlavirlGLiGgGmpedea.alvrae 76
               s +d+++ +  GL  +Gm+ +ea ++++a+
  MMETSP0890-20130614|908_1 12 SRDDMMEELMEGLMDEGMTQEEAkEFIQAT 41
               5689*******************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 167.36
//
Query:       MMETSP0890-20130614|911_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-28   97.1   8.4    8.7e-28   96.8   5.8    1.1  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   5.8   6.4e-32   8.7e-28       1     126 [.      63     196 ..      63     198 .. 0.97

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 6.4e-32
  PF02466.14   1 sclektvlagvagfalGavyGlfmrsmha........atklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleglrgkndllnsvaAGaltGavlarrggpqaaavgaagfaafsaaiealgr 126
                 sc+ k++ +++ g+++G+ +G+f++   a         ++l+ ++pl  ql+a+ r  +++   +ak+f v++a++sg++c++e+ rgk+d+ln++++G+ +Gavla+++gpqa++ g+ gfaaf +a+eal+ 
   MMETSP0890-20130614|911_1  63 SCAFKATTGVLIGGIMGVFMGMFFGVLGAepsvgvgpGGRLIPQAPLVDQLRATSRTLGEKMIWYAKSFSVITALFSGLDCLFEKGRGKHDALNGALSGCTAGAVLAAKQGPQAMCLGCGGFAAFTVAVEALMA 196
                 7999*********************99778899999999********************************************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 871.40
//
Query:       MMETSP0890-20130614|914_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 380.37
//
Query:       MMETSP0890-20130614|912_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-30  106.5  24.1    1.1e-30  106.5  16.7    1.6  1  PF04012.7  PspA/IM30 family
     0.0045   16.1   1.2     0.0045   16.1   0.8    1.6  2  PF06717.6  Protein of unknown function (DUF1202)
     0.0072   16.6  10.4      0.012   15.9   3.3    2.9  3  PF01895.14 PhoU domain
  ------ inclusion threshold ------
      0.012   15.4   2.4      0.017   14.9   1.4    1.5  1  PF09893.4  Uncharacterized protein conserved in archaea (DUF2120)
      0.035   14.3   3.2      0.035   14.3   2.2    3.5  5  PF04102.7  SlyX
        0.1   11.6   0.7       0.15   11.1   0.3    1.4  1  PF11376.3  Protein of unknown function (DUF3179)
       0.31   10.0  11.9       0.42    9.6   8.3    1.3  1  PF02601.10 Exonuclease VII, large subunit
       0.49    9.3   2.9       0.83    8.5   2.0    1.6  1  PF02390.12 Putative methyltransferase
        4.4    6.5   6.4        2.6    7.2   0.9    2.2  2  PF11157.3  Protein of unknown function (DUF2937)
        4.5    7.2  10.4        2.7    8.0   1.5    2.8  4  PF09784.4  Mitochondrial ribosomal protein L31


Domain annotation for each model (and alignments):
>> PF04012.7  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5  16.7   7.9e-34   1.1e-30      50     218 ..       1     171 [.       1     174 [. 0.97

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 7.9e-34
  PF04012.7  50 iarqkqlerkleeqkeqakklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgklstesatdslerieeKieerearadaaaelae...saqdldakleaagiqkavseqvlarlkae 218
                +a+qk+++r+ +++++ a++++ +A++AL+  +eeLAreal ++++  +q+  l+ q   q ++  +l  + + le ki+e+k+ k+ ++ar+ +ak + +v+  l ++  ++++d++er++eK+e +e++a+ a+el +   s+ d + k+++++ + +v +++l+r+k++
  MMETSP0890-20130614|912_1   1 MATQKRMQRQKDQAENLANEWYRRAQLALESDDEELAREALSRKQQQDDQISSLDDQIRLQSESLNKLYDSMQTLENKIAEAKSTKDQYIARARTAKTATKVNDMLSSVTGSTSMDAFERMKEKVEMLETEAEVAGELTQgtaSSIDSETKFRQLEMGSKV-DDELSRMKRA 171
                89*****************************************************************************************************************************************985555559999**********.********85 PP

>> PF06717.6  Protein of unknown function (DUF1202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.8   3.3e-06    0.0045     135     191 ..      46     102 ..      38     131 .. 0.91
   2 ?   -2.8   0.0         2   2.7e+03     135     152 ..     160     177 ..     141     203 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.3e-06
  PF06717.6 135 dfnyrfsalkseyarkkssinelekdvkaldkkivvakkeadayWGkgadGkqltre 191
                + ++++s+l+++ + + +s+n+l + ++ l++ki+ ak   d+y  +    k+ t+ 
  MMETSP0890-20130614|912_1  46 QQDDQISSLDDQIRLQSESLNKLYDSMQTLENKIAEAKSTKDQYIARARTAKTATKV 102
                5699************************************************99986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2
  PF06717.6 135 dfnyrfsalkseyarkks 152
                  ++ +s++k ++++ ++
  MMETSP0890-20130614|912_1 160 KVDDELSRMKRALNAGNE 177
                345555555555554433 PP

>> PF01895.14  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.3   8.7e-06     0.012       6      60 ..      16      74 ..      12     121 .. 0.76
   2 ?   -1.0   0.0       1.6   2.1e+03      14      28 ..     113     126 ..      97     140 .. 0.66
   3 ?    2.8   0.1      0.11   1.5e+02       3      40 ..     156     196 ..     155     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.7e-06
                HHHHHHHHHHHHHHHTT-HHHHHHHHHH....HHHHHHHHHHH......HHHHHHHHHH-GG... CS
  PF01895.14  6 elvlemlddaldalekkdtelarevier....ddeidrlekei......eekilealanrnplae 60
                +l++e +++a  ale++d+elare+++r    dd+i  l ++i       +k+       +++++
   MMETSP0890-20130614|912_1 16 NLANEWYRRAQLALESDDEELAREALSRkqqqDDQISSLDDQIrlqsesLNKL------YDSMQT 74
                68889999**************9999887899999999999995543333333......333333 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.6
                 HHHHHHHTT-HHHHH CS
  PF01895.14  14 daldalekkdtelar 28 
                 +++da+e+   e+ +
   MMETSP0890-20130614|912_1 113 TSMDAFERMK-EKVE 126
                 4566666554.4433 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH....HHHHHHH CS
  PF01895.14   3 rmaelvlemlddaldalekkdtelarevier....ddeidrl 40 
                 +m+++v + l+++ +al  ++ e a +++      +de+ +l
   MMETSP0890-20130614|912_1 156 EMGSKVDDELSRMKRALNAGN-ENAPKALPAdpavEDELSKL 196
                 8999*************9999.99966654424556666555 PP

>> PF09893.4  Uncharacterized protein conserved in archaea (DUF2120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.4   1.3e-05     0.017      25     114 ..      33     133 ..      25     146 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
  PF09893.4  25 eevlivrgvsrekldldeeveklesileeldvekvdklseegkelveel.............deilksvreivevlteseiyldelgferlKeslEalgcead 114
                +e l+  ++sr k ++d++++ l++ + +l+ e ++kl +  + l +++               + k+ ++++++l+     +   +fer+Ke++E+l  ea+
  MMETSP0890-20130614|912_1  33 DEELAREALSR-KQQQDDQISSLDDQI-RLQSESLNKLYDSMQTLENKIaeakstkdqyiarARTAKTATKVNDMLSSVTGSTSMDAFERMKEKVEMLETEAE 133
                45566667778.556666666666654.5667889999888888888886666555444443344445559******99999999*************99987 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.6         1   1.4e+03      30      47 ..       3      20 ..       1      36 [. 0.64
   2 ?   14.3   2.2   2.5e-05     0.035      14      54 ..      45      85 ..      41      95 .. 0.88
   3 ?   -0.3   0.1      0.93   1.3e+03      35      49 ..     119     133 ..     101     151 .. 0.70
   4 ?   -0.5   0.1       1.1   1.5e+03      29      29 ..     153     153 ..     120     187 .. 0.59
   5 ?   -3.0   0.0       6.5   8.9e+03      40      49 ..     192     201 ..     188     205 .. 0.40

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1
  PF04102.7 30 qqkeidrlqrqlrllaer 47
                qk+++r+++q + la++
  MMETSP0890-20130614|912_1  3 TQKRMQRQKDQAENLANE 20
               567777777777777665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.5e-05
  PF04102.7 14 afqedtieeLNevvaeqqkeidrlqrqlrllaerlkelees 54
                 q+d i +L++++  q + + +l + ++ l++++ e++++
  MMETSP0890-20130614|912_1 45 QQQDDQISSLDDQIRLQSESLNKLYDSMQTLENKIAEAKST 85
               67***********************************9943 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.93
  PF04102.7  35 drlqrqlrllaerlk 49 
                +r+++++++l+ + +
  MMETSP0890-20130614|912_1 119 ERMKEKVEMLETEAE 133
                555555555555544 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 1.1
  PF04102.7  29 e 29 
                +
  MMETSP0890-20130614|912_1 153 R 153
                1 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 6.5
  PF04102.7  40 qlrllaerlk 49 
                +l+ l+e+  
  MMETSP0890-20130614|912_1 192 ELSKLKEKQA 201
                3333333333 PP

>> PF11376.3  Protein of unknown function (DUF3179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00011      0.15      88     209 ..      65     190 ..      52     205 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
  PF11376.3  88 sGkLrnsnlvmyDr..eteslWqqatgeaieGpl..tgtkLeelpvvlttwekfkeryPdalVlseetglernygrdpygsydsarrpf.llfpvektddrlppkervlgvetgdeavAipldelre 209
                 +kL+ s +++  +  e +s  +q +++a + +   + +++ +  +  t++++f+++  + + l +e  +  + ++ + +s ds+++ f  l +++k+dd+l +++r l ++++++ +A p d + e
  MMETSP0890-20130614|912_1  65 LNKLYDSMQTLENKiaEAKSTKDQYIARARTAKTatKVNDMLSSVTGSTSMDAFERMKEKVEMLETEAEVAGELTQGTASSIDSETK-FrQLEMGSKVDDELSRMKRALNAGNENAPKALPADPAVE 190
                57788888888777778888889999999888773333445555566799***********************************99.4479****************************9986554 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.3   0.00031      0.42     144     258 ..       6     133 ..       2     204 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00031
  PF02601.10 144 nkeelkeklknleqrlsralksklekekaklnllknrltlksrrkplskleqeeerleelkerlek......sleqllqskesqleklnaslaknnpdyklnkkl.ekitllkneldsels..........s 258
                 ++++ k++ +nl+++  r+++  le+++++l++ + + +++++++    +++ ++++++++e+l+k      +le+++ +++s+ +++ a++ + +  +k+n  l + +   ++   ++++          +
   MMETSP0890-20130614|912_1   6 RMQRQKDQAENLANEWYRRAQLALESDDEELAREALSRKQQQDDQ----ISSLDDQIRLQSESLNKlydsmqTLENKIAEAKSTKDQYIARARTAKTATKVNDMLsSVTGSTSMDAFERMKekvemleteaE 133
                 55667799999*********************9999888888666....44444444444444444332222366666666666666666666666666666655322222222222222222223333330 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.0    0.0006      0.83     114     189 ..      10      86 ..       3     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0006
                 -TTHHHHHHHHB-----EEEEES-HHHHHHHHHHHHH.STTEEE-.-HHHHHT-HHHH.HHT--------------- CS
  PF02390.12 114 qpellkelarvLkkgGvlelaTDveeyleemlelleenkpllerieeseelnespvkd.lristkyeqkvlklgeei 189
                 q++  ++la+    +++l l +D+ee+++e+l   +++ ++ + ++++ +l+ + +++   ++   e+k+ +++ ++
   MMETSP0890-20130614|912_1  10 QKDQAENLANEWYRRAQLALESDDEELAREALSRKQQQDDQISSLDDQIRLQSESLNKlYDSMQTLENKIAEAKSTK 86 
                 566677888889999**********************9999999998888888888885566677777777766554 PP

>> PF11157.3  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.9    0.0019       2.6      82     123 ..       2      42 ..       1      47 [. 0.92
   2 ?    1.8   0.2     0.085   1.2e+02      72     102 ..      57      85 ..      44     110 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0019
  PF11157.3  82 alvaRyaaLesalaalaqaspferllvllraadreiaeetws 123
                a+ +R+++ +++ ++l +++++ r++ +l++ d+e+a+e++s
  MMETSP0890-20130614|912_1   2 ATQKRMQRQKDQAENL-ANEWYRRAQLALESDDEELAREALS 42 
                57889999999*****.9*********************987 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.085
  PF11157.3  72 vvraraesmqalvaRyaaLesalaalaqasp 102
                 +r + es+++l++ +++Le+++a+   +s 
  MMETSP0890-20130614|912_1  57 QIRLQSESLNKLYDSMQTLENKIAEA--KST 85 
                67777888888888888888888776..222 PP

>> PF09784.4  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       8.5   1.2e+04      23      32 ..       7      11 ..       3      27 .. 0.49
   2 ?    8.0   1.5     0.002       2.7      19      79 ..      42      97 ..      35     110 .. 0.68
   3 ?   -0.0   0.0       0.6   8.2e+02      24      63 ..      95     132 ..      87     140 .. 0.53
   4 ?    4.3   0.0     0.027        36      13      51 ..     143     181 ..     130     206 .] 0.71

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 8.5
  PF09784.4 23 rqRkRlravD 32
                qR+      
  MMETSP0890-20130614|912_1  7 MQRQ-----K 11
               2222.....2 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.002
  PF09784.4 19 tqkarqRkRlravDdviktlkealekkvkstkklekllaklpkeeemspkdkytvfdkkek 79
               ++k++q +++ + Dd i   +e+l+k + s++ le+ +a     e  s+kd+y    + +k
  MMETSP0890-20130614|912_1 42 SRKQQQDDQISSLDDQIRLQSESLNKLYDSMQTLENKIA-----EAKSTKDQYIARARTAK 97
               567777777777777777777777776666666666665.....44567777776666555 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.6
  PF09784.4  24 qRkRlravDdviktlkealekkvkstkklekllaklpkee 63 
                  k   +v+d+++ ++ + +      +++++ ++ l++e+
  MMETSP0890-20130614|912_1  95 TAKTATKVNDMLSSVTGSTSM--DAFERMKEKVEMLETEA 132
                444555677777777655332..23333333333344454 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.027
  PF09784.4  13 pwRlsktqkarqRkRlravDdviktlkealekkvkstkk 51 
                +  + ++ k+rq +   +vDd ++ +k+al+  +++  k
  MMETSP0890-20130614|912_1 143 ASSIDSETKFRQLEMGSKVDDELSRMKRALNAGNENAPK 181
                5566778999999999*************9977554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1881  (0.13758); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:00.76
# Mc/sec: 649.54
//
Query:       MMETSP0890-20130614|917_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-07   28.7   0.1    8.4e-07   28.1   0.1    1.3  1  PF00218.16 Indole-3-glycerol phosphate synthase


Domain annotation for each model (and alignments):
>> PF00218.16  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   6.1e-11   8.4e-07      29     237 ..      65     291 ..      36     298 .. 0.70

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 6.1e-11
                 ..-S-SS-HHHHCHHHTT--EEEEEE-SB-S-----BS..S--HHHH...HHHHTTT.-SEEEEE--CCCC---CCH.HHHHHHH--S-EEE........ES---SHHHHHHHHHTT-SEEEEECCCS-HHHHHHHHHHH.CCTT---EEEESSHHHHHHHHH----EEEEESEETTTT.EE-CHHHHHHCCTS......-TSEEEEE----SHHHHHHHCCT.--EEEE CS
  PF00218.16  29 klakekrsfaealkesekrlaliaevkkasPSkglire..dfdpaei...akayeeagAsaiSVLTepkyFkGsled.Lrevreavslpvlr........KdFiideyqileAralgadavLLivavlsdeeleelaeaa.kslgmevLvEvndeeeleralalgakliGvNnRnLktl.evdletteeLaelvp.....kdvllvaeSGiktredveklkkaganalLv 237
                  ++k    +a++lk+ +++l +++e+ k+ PS    ++  +++++ei   + + ++agA a+    +p     + +d +++v+e+ +  +           dFi+d++q+++A+++ga +v L  ++ +  +l++l++aa  s+g+e++v +  +++     a +a+  G N   ++ l + d+ + e+L+++ p     +++   a  G++++e++  ++++g++a+ +
   MMETSP0890-20130614|917_1  65 LAHKASGALAKKLKD-ARSLCVLCEYHKKTPSILRAQKiaEYEIPEIelvSAEIRRAGAVALALNVDPISGGCDENDvIKAVNEQNKAQTDFpgpvpiiwSDFIVDQVQLAQAYVTGAKVVTLHSEATT--HLSDLIDAAvSSFGLEPIVVIPGTSDDYLQRAKDAETAGTNILLITGLtQADMSRAEALRKECPslalvAKIDANADQGLEEAETAWLFRDVGFDAVYI 291
                 455666789999999.89999**********9633222112333333222568999******99999977555444415666666666555588889999*********************99988765..5668888773579******99877775555566777788888777777347888888888888844333333334566777777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.73
# Mc/sec: 1152.22
//
Query:       MMETSP0890-20130614|921_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   53.9   0.0    5.5e-14   51.7   0.0    1.8  2  PF13041.1  PPR repeat family
    8.4e-14   50.3   0.1    1.3e-07   31.0   0.0    2.0  2  PF01535.15 PPR repeat
      2e-12   46.2   0.0    5.8e-07   29.1   0.0    2.0  2  PF13812.1  Pentatricopeptide repeat domain
    8.8e-07   28.1   0.0     0.0032   16.8   0.0    2.2  2  PF12854.2  PPR repeat
    0.00034   20.0   0.0       0.72    9.6   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
     0.0029   17.8   0.1        1.5    9.3   0.0    2.1  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.0   0.1        1.5    8.8   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
      0.015   15.7   0.0        1.9    9.2   0.0    2.0  2  PF13428.1  Tetratricopeptide repeat
      0.018   14.8   0.0      0.043   13.5   0.0    1.6  1  PF01900.14 Rpp14/Pop5 family
      0.041   13.3   0.0        6.9    6.2   0.0    2.1  2  PF04714.8  BCL7, N-terminal conserver region
      0.046   13.7   0.0      0.077   13.0   0.0    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
       0.11   11.3   0.0       0.13   11.1   0.0    1.1  1  PF13429.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   4.8e-17   5.5e-14       6      48 ..       1      43 [.       1      45 [. 0.96
   2 ?    5.5   0.0     0.013        15      10      26 ..      40      56 ..      38      57 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 4.8e-17
  PF13041.1  6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48
               Y + Is++ k g++e+A+ lf+eM+++g++Pnv+TYs  i+++
  MMETSP0890-20130614|921_1  1 YSATISACEKGGQWEKALTLFDEMQQKGLEPNVITYSATISAC 43
               8899**************************************8 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.013
  PF13041.1 10 IsglckkgkveeAfklf 26
               Is++ k g++e+A+ l+
  MMETSP0890-20130614|921_1 40 ISACEKGGQWEKALTLL 56
               99***********9885 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.1e-10   1.3e-07       3      31 .]       1      29 [.       1      29 [. 0.96
   2 !   17.9   0.0   1.6e-06    0.0018       1      23 [.      34      56 ..      34      58 .] 0.94

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.1e-10
  PF01535.15  3 ynslIsgyckaGkleeAlelfkeMkekGv 31
                y++ Is++ k G++e+Al lf+eM++kG+
   MMETSP0890-20130614|921_1  1 YSATISACEKGGQWEKALTLFDEMQQKGL 29
                8888***********************96 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.6e-06
  PF01535.15  1 vtynslIsgyckaGkleeAlelf 23
                +ty++ Is++ k G++e+Al l+
   MMETSP0890-20130614|921_1 34 ITYSATISACEKGGQWEKALTLL 56
                69******************997 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.1e-10   5.8e-07       4      34 .]       1      31 [.       1      31 [. 0.98
   2 !   15.6   0.0   1.1e-05     0.013       1      25 [.      33      57 ..      33      58 .] 0.94

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 5.1e-10
  PF13812.1  4 yntlitalaksgrpeaAlalleeMeqqgvkP 34
               y++ i a+ k g++e+Al+l++eM+q+g++P
  MMETSP0890-20130614|921_1  1 YSATISACEKGGQWEKALTLFDEMQQKGLEP 31
               899**************************99 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.1e-05
  PF13812.1  1 vetyntlitalaksgrpeaAlalle 25
               v+ty++ i a+ k g++e+Al+ll+
  MMETSP0890-20130614|921_1 33 VITYSATISACEKGGQWEKALTLLG 57
               58********************996 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00044      0.51      20      34 .]      11      25 ..       5      25 .. 0.89
   2 !   16.8   0.0   2.8e-06    0.0032       1      30 [.      27      56 ..      27      58 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00044
  PF12854.2 20 aGrvdeAvelldeMe 34
                G  ++A+ l+deM+
  MMETSP0890-20130614|921_1 11 GGQWEKALTLFDEMQ 25
               58899*********6 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 2.8e-06
  PF12854.2  1 kGlkPdvvTYNtLIdGlCraGrvdeAvell 30
               kGl+P+v+TY+  I++  + G  ++A+ ll
  MMETSP0890-20130614|921_1 27 KGLEPNVITYSATISACEKGGQWEKALTLL 56
               7***********999988888888888776 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00063      0.72       8      24 ..       7      23 ..       6      30 .. 0.90
   2 !    8.8   0.0    0.0012       1.3       7      22 ..      41      56 ..      35      58 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00063
  PF13176.1  8 lysrlgdyekAielyer 24
               ++++ g++ekA++l+ +
  MMETSP0890-20130614|921_1  7 ACEKGGQWEKALTLFDE 23
               8999*********9976 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0012
  PF13176.1  7 rlysrlgdyekAiely 22
               +++++ g++ekA++l+
  MMETSP0890-20130614|921_1 41 SACEKGGQWEKALTLL 56
               58999********997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0013       1.5      10      25 ..       8      23 ..       5      27 .. 0.83
   2 !    6.8   0.0    0.0081       9.2      10      23 ..      43      56 ..      39      58 .] 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0013
               HHHHHHHHHHHHHHHH CS
  PF13174.1 10 yyklgdtdeAlealer 25
                +k+g++++Al+++++
  MMETSP0890-20130614|921_1  8 CEKGGQWEKALTLFDE 23
               56899********987 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0081
               HHHHHHHHHHHHHH CS
  PF13174.1 10 yyklgdtdeAleal 23
                +k+g++++Al++l
  MMETSP0890-20130614|921_1 43 CEKGGQWEKALTLL 56
               56899******987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0013       1.5      10      26 ..       7      23 ..       6      27 .. 0.86
   2 ?    4.6   0.0     0.027        31      10      23 ..      42      55 ..      41      58 .] 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
                HHHHTT-HHHHHHHHHH CS
  PF07719.12 10 ayyklgdyeeAleafek 26
                a++k g++e+Al +f++
   MMETSP0890-20130614|921_1  7 ACEKGGQWEKALTLFDE 23
                67889**********98 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.027
                HHHHTT-HHHHHHH CS
  PF07719.12 10 ayyklgdyeeAlea 23
                a++k g++e+Al +
   MMETSP0890-20130614|921_1 42 ACEKGGQWEKALTL 55
                678889*****976 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0017       1.9       8      31 ..       5      28 ..       1      39 [. 0.82
   2 ?    5.6   0.0     0.024        28       4      24 ..      36      56 ..      33      58 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0017
  PF13428.1  8 arallalGdpdeAiallrralala 31
                 a++  G++++A+ l++++ +++
  MMETSP0890-20130614|921_1  5 ISACEKGGQWEKALTLFDEMQQKG 28
               5788999***********997765 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.024
  PF13428.1  4 llalarallalGdpdeAiall 24
               + a   a++  G++++A+ ll
  MMETSP0890-20130614|921_1 36 YSATISACEKGGQWEKALTLL 56
               56667899999*******998 PP

>> PF01900.14  Rpp14/Pop5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.8e-05     0.043      73     102 ..      16      45 ..       3      48 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.8e-05
  PF01900.14  73 aaLtlitsiegkpviirvlkvSGTikkaee 102
                  aLtl +++++k   ++v+  S+Ti+++e+
   MMETSP0890-20130614|921_1  16 KALTLFDEMQQKGLEPNVITYSATISACEK 45 
                 69**************************98 PP

>> PF04714.8  BCL7, N-terminal conserver region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.006       6.9      21      37 ..       5      21 ..       2      27 .. 0.83
   2 ?    5.4   0.0      0.01        12      21      36 ..      40      55 ..      37      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.006
  PF04714.8 21 iqalekvRrWEkklvli 37
               i a ek  +WEk l l 
  MMETSP0890-20130614|921_1  5 ISACEKGGQWEKALTLF 21
               7899********99876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.01
  PF04714.8 21 iqalekvRrWEkklvl 36
               i a ek  +WEk l l
  MMETSP0890-20130614|921_1 40 ISACEKGGQWEKALTL 55
               7899********9876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.7e-05     0.077      39      82 ..      12      57 ..       6      58 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.7e-05
               --HHHHHHHHHC...TSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHH CS
  PF12895.2 39 geykrAyellrk...leldssslgcryll.ArcllklgkydeAiavLe 82
               g++++A+ l+++   + l+++   + y +   +++k g++++A+++L+
  MMETSP0890-20130614|921_1 12 GQWEKALTLFDEmqqKGLEPN--VITYSAtISACEKGGQWEKALTLLG 57
               99********88764444443..3555554599************997 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.13     116     169 ..       4      56 ..       1      58 [] 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
  PF13429.1 116 alellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrll 169
                 +   e+ +++++  +l+ + ++++ +e +  +++a +++ ++ gq++kAl+ll
  MMETSP0890-20130614|921_1   4 TISACEKGGQWEKALTLFDE-MQQKGLEPNVITYSATISACEKGGQWEKALTLL 56 
                6777888999********99.66666*************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.83
# Mc/sec: 167.46
//
Query:       MMETSP0890-20130614|924_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       132  (0.00965477); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 184.86
//
Query:       MMETSP0890-20130614|919_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.98
# Mc/sec: 1423.14
//
Query:       MMETSP0890-20130614|926_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.76
# Mc/sec: 217.56
//
Query:       MMETSP0890-20130614|918_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-57  192.9   0.0    7.3e-57  192.1   0.0    1.4  1  PF01761.15 3-dehydroquinate synthase
    0.00029   20.1   0.0    0.00029   20.1   0.0    1.8  2  PF13685.1  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> PF01761.15  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   0.0   1.1e-60   7.3e-57       7     259 ..     203     458 ..     200     460 .. 0.95

  Alignments for each domain:
  == domain 1    score: 192.1 bits;  conditional E-value: 1.1e-60
                 --TTSSCCCHHHHHHHHHCSS--TT-EEEEE----TTT----HHHHTT---EEEE---SHHHHHCTT------BB-------B------SEEEEEGGGGCCS-HHHHH---HHHHHHHHTT-HHHHHHHHHCCHHCHH--THCCHHHHHHHHHHHHHHHHHHTTT----GGGGG-------CCCHHCTT.......TS----TTT---HHHHHHHHH-----HHHHHHHHHHHHH-----STT-H--HHHHHHHHTT-TT CS
  PF01761.15   7 gEksKsletlekllealleaklerksliialGGGvvgDlaGfvAatylRGvrfiqvPTtllaqvDssvGgKtginlpegKNliGaFyqPkaVlidlevLktlpkrelraGlaEviKyaliadaelfelleeeaeallkekeeealeeliarsvevkaevveeDekekglralLnlGHtigHaiEallgy.......kllHGeaVaiGmvlaaelseklgllkeeeverllkllkklglptslkelldveellealkkDkk 259
                  E++K+l+t++kl +++l+++++++s+ii++GGGvv +++G+ A+ + RG+++i+  Tt+++qvD+++  K+++n+  gKNl+G +y+++ +++d++vL t ++r+  +GlaE +K+a+++ ++l++++ ++ +      + e l+ +++r++++k   +++ e      ++  +GH  +Ha+E l+ +        +lHGeaVa+Gm++ ae+++ +g+++++ ve++++++++++lp  ++ ++d ++++++l++Dk+
   MMETSP0890-20130614|918_1 203 TEETKTLQTFSKLADQVLQSGVDKRSCIISVGGGVVNNICGYLAGSIYRGISLIHFSTTFMGQVDAAIDFKQAVNHCCGKNLLGCYYPATKIVLDPSVLLTQSTRHRLNGLAESLKHAMVHSTDLLDFIVNSGSVA----DAEYLDGVVRRTIAIKVPTLTHYEASDFNEMAPQYGHAPAHAVEFLSWHggcpehgPILHGEAVAMGMAVSAEVAYLMGICSKQVVEDHYRVIEAVNLPSCVPAEMDLDKIIAKLAYDKH 458
                 79******************************************************************************************************************************99998444....789**************9999988888888889***********98755555666789*************************************************************8 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.2e-08   0.00029      15      97 ..     152     248 ..     135     267 .. 0.71
   2 ?   -2.1   0.5      0.25   1.7e+03     229     250 .]     374     403 ..     359     403 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.2e-08
  PF13685.1  15 kklklkkvlvvadentykaagekveeslkeagveve..vleeleeea..........dleaveklvealrekdad...lvvavGsGtinDlaKyvsak 97 
                +k + + +++v+d+ t  +++++v + l + g++v+  v++  e ++          +l++  kl++++ ++++d   ++++vG+G +n ++ y++ +
  MMETSP0890-20130614|918_1 152 AKCHRSPLYIVTDSVTDPLVAQDVYDGLLSCGLNVKkfVIT-SETDEsgetsteetkTLQTFSKLADQVLQSGVDkrsCIISVGGGVVNNICGYLAGS 248
                334667899**************************954222.222212233333233577888888888888888888****************9875 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.25
  PF13685.1 229 eHllShaleme........akpllHGekVG 250
                 H  +ha+e          + p lHGe V+
  MMETSP0890-20130614|918_1 374 GHAPAHAVEFLswhggcpeHGPILHGEAVA 403
                58889999999665554433779****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.41s 00:00:01.22 Elapsed: 00:00:01.03
# Mc/sec: 1186.55
//
Query:       MMETSP0890-20130614|934_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-59  200.3   0.0    2.7e-59  200.1   0.0    1.0  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    7.7e-12   44.9   0.0    1.2e-11   44.3   0.0    1.3  1  PF13847.1  Methyltransferase domain
    1.3e-11   44.9   0.0    2.1e-11   44.2   0.0    1.3  1  PF12847.2  Methyltransferase domain
    5.8e-07   29.2   0.0    8.1e-07   28.7   0.0    1.2  1  PF13489.1  Methyltransferase domain
    7.7e-07   28.5   0.0    1.6e-06   27.5   0.0    1.6  1  PF05175.9  Methyltransferase small domain
    2.5e-05   24.1   0.0      6e-05   22.9   0.0    1.7  1  PF13659.1  Methyltransferase domain
    2.8e-05   23.7   0.0    3.8e-05   23.2   0.0    1.3  1  PF13679.1  Methyltransferase domain
    0.00011   22.3   0.0     0.0002   21.5   0.0    1.4  1  PF13649.1  Methyltransferase domain
    0.00017   20.7   0.0    0.00021   20.4   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0071   16.6   0.0      0.018   15.4   0.0    1.8  1  PF08241.7  Methyltransferase domain
     0.0078   15.4   0.1      0.012   14.8   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
     0.0084   16.4   0.0      0.017   15.4   0.0    1.5  1  PF08242.7  Methyltransferase domain
     0.0086   14.6   0.0      0.013   14.1   0.0    1.3  1  PF08003.6  Protein of unknown function (DUF1698)
  ------ inclusion threshold ------
      0.079   11.9   0.0       0.11   11.5   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
      0.081   11.9   0.0       0.11   11.5   0.0    1.3  1  PF02527.10 rRNA small subunit methyltransferase G
       0.13   12.3   0.0         13    5.8   0.0    2.2  2  PF04326.9  Divergent AAA domain


Domain annotation for each model (and alignments):
>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.0   3.2e-62   2.7e-59       2     208 ..       2     228 ..       1     229 [] 0.92

  Alignments for each domain:
  == domain 1    score: 200.1 bits;  conditional E-value: 3.2e-62
                 HHHHHHHHHHH--.---HHHHHHHHHS-GGGGS-G.......GGGGGTTSSS-EE-----EE--HHHHHHHHHHTT...-.-TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--........SEEEE--------GGG--BSEEEESSB-SS--HHHHHTB-----EEEEE-..--SEEEEEEEE--.--EEEEEEEEE---B---- CS
  PF01135.14   2 kkealieelkkkgviksdkvaealeevdReefvpe.......sfkekaYedaplsigynatiSaphmvalalelle...l.kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle........nvivvvgDGrkGyeekaPYdaihvgaaapeiPealidQLkeGGrlvvPvge.eeeQvlklvdkkadgkvvikkleevrfvpltdk 208
                 ++e l+++l+++gv+ s+ va++l+  dR ef+++          ++aY d+pl+i  ++tiSaphm a+alell    + kk  rvL+vGsGsGylta la l ge + + +ie++++lv+ a+ n+++l+ +        +v++  +DG++G ++kaP+daih gaaa  +P+al++QL+ GGrl++Pvg+ +  Q+l ++dk +d++++ ++l  vr+v l++k
   MMETSP0890-20130614|934_1   2 TNEGLVNNLIRDGVVSSESVANVLRRLDRREFAKTlaspltqRSVQEAYRDSPLPITDGSTISAPHMLARALELLLpvlIdKKNVRVLDVGSGSGYLTAGLALLGGEGTIAYGIEHSESLVKFAETNINNLQDKqlkqelesRVHFFKSDGWEGLPDKAPFDAIHCGAAAATVPDALLNQLARGGRLIIPVGHrDDAQQLVQIDKLQDDTLQLTRLFGVRYVELVQK 228
                 6899****************************875222111123469***************************99996435778*****************999999999******************999888999*******************************************************999****************************987 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.4e-14   1.2e-11       2     112 ..      83     194 ..      82     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 1.4e-14
  PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAke...raqklgfe.....nveFiqgdiee.leklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                k++++vlD+G+G+Gyl+  la +lg +++  +Gi+ se  +++A++   ++q+++++     +v+F ++d  e l+ +  ++fD + + ++ + ++d       + + l  ggrli+   +
  MMETSP0890-20130614|934_1  83 KKNVRVLDVGSGSGYLTAGLA-LLGGEGTiAYGIEHSESLVKFAETninNLQDKQLKqelesRVHFFKSDGWEgLPDK--APFDAIHCGAAAATVPDA------LLNQLARGGRLIIPVGH 194
                89*******************.888877779***************77745555554555589*******9999**98..99******9888887776......56667777777765555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   2.4e-14   2.1e-11       1     109 [.      84     190 ..      84     193 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 2.4e-14
  PF12847.2   1 kgkrilDlGcGtGslslelarlrpgak.vvgvDpseeslelarena.......ksldleeriellqgdakeelsller...fDavllkgltldallaldeprrvlealpkllkpggrlvi 109
                k+ r+lD+G+G+G+l++ la l ++++  +g++ se  ++ a+ n+        ++ le+r+++  +d    ++ l++   fDa+ ++      + a      v +al + l+ ggrl+i
  MMETSP0890-20130614|934_1  84 KNVRVLDVGSGSGYLTAGLALLGGEGTiAYGIEHSESLVKFAETNInnlqdkqLKQELESRVHFFKSDG---WEGLPDkapFDAIHCGA-----AAAT-----VPDALLNQLARGGRLII 190
                5779*****************98888899**************99999988876678899999999999...666666666******77.....3344.....36789999999999998 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   9.5e-10   8.1e-07       8     119 ..      68     195 ..      64     223 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 9.5e-10
  PF13489.1   8 eladllerllar..lkpggrvLDiGcGtGillell...aengfdvtgvDpspaaigkakqaqksqfdeedaae.................pagkfdlivarevlehvpdpeellrqiaellkpgGylllstpna 119
                +la++le ll+   +k++ rvLD+G+G+G+l++ l     +g   +g++ s+ +++ a ++ +   d++ ++e                 ++++fd i++     +vpd  +ll+q+a+    gG l++ +  +
  MMETSP0890-20130614|934_1  68 MLARALELLLPVliDKKNVRVLDVGSGSGYLTAGLallGGEGTIAYGIEHSESLVKFAETNINNLQDKQLKQElesrvhffksdgweglpDKAPFDAIHCGAAAATVPD--ALLNQLAR----GGRLIIPVGHR 195
                6788888888886568888************77772225567778899999888876444444444444433333344444444444444556**************88..68999998....99999987543 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.9e-09   1.6e-06      18     103 ..      71     166 ..      65     203 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.9e-09
                ---HHHHHHS-TT------B-------HHHHHHHH-TT--.--EEESBHHHHHHHHHHHH...H----......--EEE-STTTT--..--BS-EE CS
  PF05175.9  18 aGselLletlpkklagkvlDlGcGaGvlgaalakespele.vtlvDinarAvesakanle...anklen.....vevlasdlleeve.ekkfdliv 103
                ++ elLl +l +k++ +vlD+G+G G+l+a la  + e +    ++ +++ v++a++n++   +++l++     v++++sd+ e ++ ++ fd+i 
  MMETSP0890-20130614|934_1  71 RALELLLPVLIDKKNVRVLDVGSGSGYLTAGLALLGGEGTiAYGIEHSESLVKFAETNINnlqDKQLKQelesrVHFFKSDGWEGLPdKAPFDAIH 166
                56789*******************************999956789**********9876511144444344448999*******999777899986 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     7e-08     6e-05       2      74 ..      86     165 ..      85     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 7e-08
  PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlar.......aglaervrvrqgdlrdlaellragsfdlv 74 
                 rvld+g+GsG++++ ++ l+     ++g+E ++  ++ a++n+ +        +l++rv+++++d  +     ++++fd++
  MMETSP0890-20130614|934_1  86 VRVLDVGSGSGYLTAGLALLGgeGTIAYGIEHSESLVKFAETNINNlqdkqlkQELESRVHFFKSDGWEGL--PDKAPFDAI 165
                69****************99888899***************999884444443445999999999975554..367788877 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.5e-08   3.8e-05      23      86 ..      82     139 ..      67     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.5e-08
  PF13679.1  23 eegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsf 86 
                ++++++v+DvG+G gYL+  la  l     ++  +gi+ +e+lv+ ae+  ++l+    k+l++
  MMETSP0890-20130614|934_1  82 DKKNVRVLDVGSGSGYLTAGLAL-LG--GEGTIAYGIEHSESLVKFAETNINNLQD---KQLKQ 139
                46789******************.33..367899***********99998888883...33322 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.4e-07    0.0002       1      88 [.      88     181 ..      88     193 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.4e-07
  PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss...kgl......kvkfvqadaralpfeegefdlvvcaglslehlspkqlea 88 
                +ld+G+GsG  ++ l+    +g     +g++ se  +++a++++++   k+l      +v+f+++d  +   ++++fd++ c g+  + + +  l +
  MMETSP0890-20130614|934_1  88 VLDVGSGSGYLTAGLALLGGEG--TIAYGIEHSESLVKFAETNINNlqdKQLkqelesRVHFFKSDGWEGLPDKAPFDAIHC-GAAAATVPDALLNQ 181
                79*************9665445..8999***********9966654443222555588********955555667*******.87444444444444 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.4e-07   0.00021     159     214 ..      82     138 ..      68     190 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.4e-07
  PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDi..DevAvkvakeNaelNkvea.kle 214
                 k++ +vlDvG GSG L+ + a+Lg +  +a+ i   e  vk a+ N++  ++++ +l+
  MMETSP0890-20130614|934_1  82 DKKNVRVLDVGSGSGYLTAGLALLGGEGTIAYGIehSESLVKFAETNIN--NLQDkQLK 138
                577789*******************998766665115778999998874..44442443 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.018       1      75 [.      89     176 ..      89     194 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-05
  PF08241.7   1 LdvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle...........lvvad.aeelpfednsfDvvvssevlehled 75 
                LdvG+G+g+l++ la    ++   +g++ se+ ++ a++++++ + +           + + d  e lp + + fD++ + ++   ++d
  MMETSP0890-20130614|934_1  89 LDVGSGSGYLTAGLALLggEGTIAYGIEHSESLVKFAETNINNLQDKqlkqelesrvhFFKSDgWEGLP-DKAPFDAIHCGAAAATVPD 176
                8****************9999999********9999999888876667778888888855555355555.3568999999888877743 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05     0.012      12      67 ..      83     140 ..      74     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
  PF07021.7  12 kpgsrvldlGcGdGel...lellkeekqvdgrGleldeegvaecvakGlsviqgdldkd 67 
                k++ rvld+G+G G l   l ll    +  ++G+e++e+ v+ + +   ++ +++l ++
  MMETSP0890-20130614|934_1  83 KKNVRVLDVGSGSGYLtagLALLG-GEGTIAYGIEHSESLVKFAETNINNLQDKQLKQE 140
                45679*********9955566775.578889******9988765544444444444444 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-05     0.017       1      79 [.      89     174 ..      89     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2e-05
  PF08242.7   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg......ssfDvvvasnvlhhl 79 
                L++G+G+G l+  l+    ++   +g++ s+s ++ a+  ++  ++++ ++    + + +++dg       + fD++++  +   +
  MMETSP0890-20130614|934_1  89 LDVGSGSGYLTAGLALLGgEGTIAYGIEHSESLVKFAETNINNLQDKQLKQELESRVHFFKSDGWeglpdkAPFDAIHCGAAAATV 174
                8*************99995555556*********77777777777766666666666655555548888999*****998776665 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-05     0.013     107     161 ..      76     133 ..      50     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.5e-05
  PF08003.6 107 vlphlsdlkgrtildvGcgnGyhl..wrmvgegaklvvGidPselfliqfe.avrkll 161
                +lp l d k+ ++ldvG g+Gy      ++g + +++ Gi+ se  +   e  +++l 
  MMETSP0890-20130614|934_1  76 LLPVLIDKKNVRVLDVGSGSGYLTagLALLGGEGTIAYGIEHSESLVKFAEtNINNLQ 133
                67889999**************97335789999********98864433331333333 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.11      44     131 ..      81     176 ..      67     194 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
  PF01209.13  44 avkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki........nieflqanaeeLpfeddsfDvvtvsfGlrnvtD 131
                  +k+  +vlDv +G+g l++ l+   ge     +++ +e+++k +e  +++   +        +++f ++++ e   ++  fD +  +     v+D
   MMETSP0890-20130614|934_1  81 IDKKNVRVLDVGSGSGYLTAGLALLGGEGTIAYGIEHSESLVKFAETNINNLQDKqlkqelesRVHFFKSDGWEGLPDKAPFDAIHCGAAAATVPD 176
                 5788899***************98777766555677777777766654443222222233334999999999776667788888877766666666 PP

>> PF02527.10  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.11      44     109 ..      80     147 ..      62     218 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00013
                 CS-GGC..EEE--------HHHHHHH-TTSE.EEEEES-HHHHHHHHHHHHHCT-SSEE.EEES-TTT CS
  PF02527.10  44 llkekrskviDvGsGaGlPGipLaiarpelk.ltLleskekkiaFLeelkkelklenve.ivearaee 109
                 l+++k+ +v+DvGsG G     La++  e    + +e +e  ++F e  +++l+ ++++  +e+r++ 
   MMETSP0890-20130614|934_1  80 LIDKKNVRVLDVGSGSGYLTAGLALLGGEGTiAYGIEHSESLVKFAETNINNLQDKQLKqELESRVHF 147
                 56667768*********988888888777663455777777777777777777766654135666655 PP

>> PF04326.9  Divergent AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.015        13      32      70 ..     107     144 ..      87     151 .. 0.71
   2 ?    4.3   0.0     0.045        38      28      63 ..     177     215 ..     174     224 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.015
  PF04326.9  32 segGylliGVeddgkvvGvecsdqeedqlrlelksiikr 70 
                   G++ +G+e + ++v +  ++ ++ q++++++++++r
  MMETSP0890-20130614|934_1 107 G-EGTIAYGIEHSESLVKFAETNINNLQDKQLKQELESR 144
                4.3*********999999844444444444444444444 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.045
  PF04326.9  28 AfaNs..egGylliGVe..d.dgkvvGvecsdqeedqlrle 63 
                A++N+  +gG+l+i V   d  +++v +  ++ ++d+l+l+
  MMETSP0890-20130614|934_1 177 ALLNQlaRGGRLIIPVGhrDdAQQLVQI--DKLQDDTLQLT 215
                899*54489*******954324447777..55566665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.84
# Mc/sec: 653.29
//
Query:       MMETSP0890-20130614|936_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00013   21.3   0.1    0.00022   20.6   0.1    1.3  1  PF07671.6  Protein of unknown function (DUF1601)
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.031   13.8   0.0    1.6  2  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   3.2e-08   0.00022      17      36 ..       1      24 [.       1      24 [. 0.94

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.2e-08
  PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
               L++AI+    +    FNpQ+IANt
  MMETSP0890-20130614|936_1  1 LFNAIAdaalKKLDEFNPQDIANT 24
               7999999999999**********9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.6e-06     0.031      21      50 ..       1      30 [.       1      42 [. 0.90
   2 ?    0.0   0.0     0.092   6.3e+02      18      35 ..      35      52 ..      30      53 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.6e-06
  PF06743.10 21 ffeklasalereLdsispelllnlvwSlcl 50
                +f+++a a  ++Ld+++p++  n+ w+++ 
   MMETSP0890-20130614|936_1  1 LFNAIADAALKKLDEFNPQDIANTTWAFAT 30
                689999**********************86 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.092
  PF06743.10 18 aeeffeklasalereLds 35
                a  ff+++a a  ++Ld+
   MMETSP0890-20130614|936_1 35 APVFFNAIADAALKKLDK 52
                566999999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.44s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP0890-20130614|933_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-24   84.9   0.5    3.7e-24   84.8   0.3    1.0  1  PF00241.15 Cofilin/tropomyosin-type actin-binding protein
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.022   13.8   0.0    1.2  1  PF05995.7  Cysteine dioxygenase type I


Domain annotation for each model (and alignments):
>> PF00241.15  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.3   5.5e-28   3.7e-24      28     126 ..       6     104 ..       1     105 [. 0.94

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 5.5e-28
                 SSEEEEEE.E-S-HCCCCCCTS-TTS-EEEEEEEEEEBS.S-EEEEEEEEEE--TTS-HHHCHHHHHCCHHHHHHH----EEEEES-GGGGSHHHHCHHH CS
  PF00241.15  28 kkivveqvgetgdsydelveelkerecrYavldveytee.eskkskivfvswcpdgApvkkkmlyASskdalkkslkgikvevqatdasdlseeelkekl 126
                 +++v+e++  ++ +++++ +el+ + + Y+v+d++yt+  +   +ki+++sw+pd+A++k+km y+++k+a+k++l+gi+v+++atd s+ +e+el +++
   MMETSP0890-20130614|933_1   6 TEVVLEKEYPKSMTMADFQSELD-DSPKYIVVDYDYTTLdGRPADKIILISWIPDTAKIKEKMKYSGTKEAVKSALQGIAVNINATDKSECTEDELTAAC 104
                 6999**9999************9.89***********9868889****************************************************9877 PP

>> PF05995.7  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.2e-06     0.022      43      87 ..      20      61 ..      14      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.2e-06
  PF05995.7 43 lerlesdltewgkyvrfdqtkytrnliagngelellllswvpgqg 87
               +++++s+l +  ky+ +d   y ++++ g ++  ++l+sw p+++
  MMETSP0890-20130614|933_1 20 MADFQSELDDSPKYIVVD---YDYTTLDGRPADKIILISWIPDTA 61
               679999**9******998...8999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.28s 00:00:00.55 Elapsed: 00:00:00.62
# Mc/sec: 413.56
//
Query:       MMETSP0890-20130614|940_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-19   68.4   0.8    7.5e-19   67.4   0.5    1.5  1  PF09713.5 Plant protein 1589 of unknown function (A_thal_3526)
  ------ inclusion threshold ------
        1.5    8.8   0.0        1.5    8.8   0.0    2.7  2  PF14144.1 Seed dormancy control
        2.8    8.1  11.2        3.8    7.6   7.8    1.2  1  PF13476.1 AAA domain


Domain annotation for each model (and alignments):
>> PF09713.5  Plant protein 1589 of unknown function (A_thal_3526)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.5   1.7e-22   7.5e-19       1      52 [.      23      74 ..      23      76 .. 0.98

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 1.7e-22
  PF09713.5  1 VqhlIErCillymsreEcvkaLdhhanIsplvTstVWkeLekeNkdFFetYg 52
               Vq+lIErC++ ym++ E++ +L+ +a+++p +T +VW++Le++N+++F  Y+
  MMETSP0890-20130614|940_1 23 VQSLIERCMQHYMTQTEIIATLQVQAEVEPALTCLVWQKLEEQNPNYFMSYQ 74
               9*************************************************97 PP

>> PF14144.1  Seed dormancy control
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00033       1.5      17      37 ..      20      40 ..       5      55 .. 0.81
   2 ?   -0.8   2.0      0.31   1.4e+03       5      24 ..     116     134 ..      95     146 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00033
  PF14144.1 17 ddeLrslvdkvlahyeeyyel 37
                +e +sl++++++hy    e+
  MMETSP0890-20130614|940_1 20 IKEVQSLIERCMQHYMTQTEI 40
               5799***********876665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.31
  PF14144.1   5 eLraalnshaksddeLrslv 24 
                eL+++ +++  +++++++l 
  MMETSP0890-20130614|940_1 116 ELQQQQQQAL-QQQQIQQLQ 134
                4555544444.444444443 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.8   0.00083       3.8     103     197 ..       8     140 ..       2     143 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00083
  PF13476.1 103 kkvkkeilelleideleqfleellksdkeilpliaylgqer...........ekekfklkekkk......rleelekelee.ledekellek....................llqeeekekeleeleeeleel 197
                 ++++++  +  i+e ++ +e+ ++    + ++ia l+ +            +k+++++ +++       rl++ + +++   e++ +ll+k                    ++q+  +++++++l+++ +++
  MMETSP0890-20130614|940_1   8 TNSDGTAYTWEAIKEVQSLIERCMQHYMTQTEIIATLQVQAevepaltclvwQKLEEQNPNYFMsyqaclRLKDQIVAFNYlVEQQTRLLQKltvslpnnaqlnnnttelqqQQQQALQQQQIQQLQQQQQQQ 140
                4556666777777888888888776666677777777777777777777666555555544444455555333333333331222333333355565555555554442221334444555666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2980  (0.217964); expected 273.4 (0.02)
Passed bias filter:                      829  (0.0606349); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.45s 00:00:00.99 Elapsed: 00:00:00.97
# Mc/sec: 365.63
//
Query:       MMETSP0890-20130614|939_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-94  316.6   9.1    1.5e-94  316.2   6.3    1.2  1  PF01384.15 Phosphate transporter family
  ------ inclusion threshold ------
      0.025   14.0   0.1       0.38   10.2   0.0    2.4  2  PF05331.6  Protein of unknown function (DUF742)


Domain annotation for each model (and alignments):
>> PF01384.15  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.2   6.3   2.1e-98   1.5e-94       1     326 []      13     560 ..      13     560 .. 0.95

  Alignments for each domain:
  == domain 1    score: 316.2 bits;  conditional E-value: 2.1e-98
  PF01384.15   1 iGanDvanavatavgskaltlkqAvilaaifeflGalllggeVaktirkgivdeslftvnapav...lllamlaallaaalwlllatylglPvStshtlvGaiiGaglaagg.lsgvnws................glllkivlswiisPilggliaallflllkklilkrkk..slkralrvvpvlv........................................................................................................................................................................................................ekekveklfrilqilsaalvsfahGanDvanaiGplaailiiyaagsvaesksavplwilllgalaialGlltggrrviktvGekitkltparGfsaelaaaltvllasllglPvStThvivgaivGvglarglk.....avnwkvvrkivlaWilTlpvsalls 326
                 +GanDvana++t+vgs++ltl+qA+ila+i+++lGa+ ++++V++tirkgivd + f+ +  ++   l+l+ml+a+l+++ ++ +at l lPvSt++++ Ga+iGa +a  g  sgv+w+                g ++ i+l w+i+P++++++a ++fl+ ++++l+ +    l+ra +     +                                                                                                                                                                                                        ++++ve++f+ +qi++a+l++fa+GanDvan ++p+aail++y+ + v+e+ + +plw+ l+++++ia Gl ++g++v++t+G+k t +tparGf +e++ +l  llas+ g+PvStT+ +vga vGvgl+ g +     ++n+ ++r+i+laWilT++ sa+++
   MMETSP0890-20130614|939_1  13 MGANDVANAFGTSVGSGVLTLRQAIILAGICNVLGAVSMSSAVTDTIRKGIVDLKDFEGDGDHTrkaLMLVMLCAMLGSVSYVGIATKLALPVSTTQAILGALIGAVIAKDGnGSGVQWHdkpicdynsmtgslscGGVVGIILQWFIAPFISLIMASIVFLISHRILLRCDVqtALRRAPPL----MafyigvtafalswfiivqqkhhphrsgwephgtrtetatalevcvclligvgiayfvlsimalsgpkslmyapylkrrhrdlyldmmqrgelssstlfindahnnnnnigappipdahdiiheesqtnkidqddgmelvdissneksvppsplkfsnfvlgrsssthnpiiqqdansptnnqqeviitteednyqrgsqhYDPRVESVFSLAQIATASLAAFAAGANDVANEVAPIAAILQTYKDKAVKEN-ARTPLWLYLFAGVGIATGLSLFGNNVVNTIGKKTTLVTPARGFNIEFGYSLASLLASAEGWPVSTTQLAVGALVGVGLVSGDRntigsTLNFALLRRIFLAWILTPFTSAIFA 560
                 7********************************************************8766665778********************************************86789********************6699****************************977665344444444....23446**************************************************************************************************************************************************************************************************************************************************99976.669*****************************************************************************6333444499********************986 PP

>> PF05331.6  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.5e-05      0.38      46      80 ..      80     116 ..      66     125 .. 0.84
   2 ?    0.6   0.0     0.051   3.5e+02      61     105 ..     502     543 ..     495     546 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.5e-05
  PF05331.6  46 railrLcre..plsVaelaAelklPvgvvrvLlsdLl 80 
                  ++ Lc+   + s + +a +l lPv++++ +l+ L+
  MMETSP0890-20130614|939_1  80 LMLVMLCAMlgSVSYVGIATKLALPVSTTQAILGALI 116
                567899*9965666699****************9997 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.051
  PF05331.6  61 laAelklPvgvvrvLlsdLldaglltvrapvtdraaeqpdrelLe 105
                la +   Pv++++  ++ L+  gl++  + ++    ++ + +lL+
  MMETSP0890-20130614|939_1 502 LASAEGWPVSTTQLAVGALVGVGLVSGDRNTIG---STLNFALLR 543
                4556678*****************998777665...445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.87
# Mc/sec: 1572.78
//
Query:       MMETSP0890-20130614|945_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.1e-135  450.5   3.5   9.4e-135  450.2   2.4    1.0  1  PF00995.18 Sec1 family
  ------ inclusion threshold ------
       0.11   11.8   0.1        0.4    9.9   0.0    1.9  2  PF03808.8  Glycosyl transferase WecB/TagA/CpsF family
       0.15   11.7   0.4        1.2    8.8   0.0    2.3  2  PF00317.16 Ribonucleotide reductase, all-alpha domain


Domain annotation for each model (and alignments):
>> PF00995.18  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.2   2.4  2.1e-138  9.4e-135       7     564 .]       1     527 [.       1     527 [. 0.92

  Alignments for each domain:
  == domain 1    score: 450.2 bits;  conditional E-value: 2.1e-138
                 -HHHHHHHHHHS-TTGGGC----EEEESSS..----BTTS-EEEEE-S-HHHHHHHHCC----SBS-EEEEESS---HHHHHHHHHS.-TTTEEEEEE----SEEECTTEEEE--TTHHHHHHS......TCHHHHHHHHHHHHHHHHHHHTT-.----EE--S..GGGHHHH.HHHHHHHHHHSSSS-----..-----SEEEEEEE----SSTTTS---BHHHHHHHHS-EGGGEEE-----....---EEE-ST.TSSHCCCCTTSBCHHHTTTS-S-STTTTT-----..-----TTHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHHT.HHHHHHHHHHCC----------SSSHHHHHS-HH...HHHHHHHHHH-.-...---HHHHHHHHHHTS-.STTTHCCHGGGG----SSS...S.T.SS---....-----T......T-SGGTTTT---CHHHHHHHHHTS---.TTTS--S..S-----------------------------EEEEEEE---BHHHHHHHHHHHHTTT.SSEEEB---S-B-HHHHHHHH CS
  PF00995.18   7 DketkkilslvlkvsdllekgVtlvekles..kreplkdlkaiyllrpteenvdriiedlkrplykeyhifftnslsdslleklakadvlekvkqvkelyldflpleddlfslelpnsfkrlyn......adtdeeelqriaqgLfsllltlge.ipiIrykgn.slaerladllarklrenlslfkasndsseageskqrpvLlIlDRsvDlitpLlhqwtYqalvhdllgiennkvkldeegikgeakkeivLde.eDkfwaelrhlnfadvgeklkkelkelktenedrksnaesiadlkkfveklpelqkekanlslHvniaeelleviekrkldkvselEqdiatgsdkekqkkqailelirnekvslydklRllllyslteglkekeleklkrllkqagigkealllvknleklglltaktasrefaslrdklkllskfaketskrtpkgvsnvlsgykplltrlvedlskgklddsetypyfddkvaqlsgasgslrskrsnaaktsearkrvqrviVFvvGGvTyeEiralqelskrlnknkrvilgstsllnpesfleel 564
                 D++t+k +s+v++++++le  V+lve+le+  + e +++lka +++rpt  n++ ++++l++p+++eyh+ff n+l++++l +la+ad+ e+v+qv+e+y+d++++++dlf+++  +s+++ ++         ++e ++r   +++s ll+l++ +  Iry+ + ++a+ +a + ++++++    ++ +n++          +LlIlDR +D++tpLl qwtYqa+vh+llg++nn+vk++   +++++ +e+vL++ +D+f+a++r++nf+d+g ++k+ l+e+++++ + ++++++i+d+++fv+++p +++++ n+s+Hv++++el + +   +l++vs+lEqdia+++d + q  +++le + n++++  dklR+ lly+l+ ++++ +l++lk +l +a++++e++ l+++++k++++ a+        l    k+++++ +   k++++gv+nv+ ++ pll +l++ + k+kl +++ +p ++  +            +            ++ ++iVF+vGG TyeE+  + e++ + + +++++lg+t ++n++sfl++l
   MMETSP0890-20130614|945_1   1 DDATTKTVSTVYSQTQILERDVFLVERLEQvdSHEAMRHLKAAVFVRPTWGNIELLCKELAAPKFSEYHVFFANVLPNEMLRRLAEADETESVRQVQEFYADYVAVNEDLFTVNQRSSLRLSNDdrgdtvTTRKNEMIERNISAILSALLSLKTqPSSIRYQASsKIARLIATQCSDRMEN-DGIYQFKNRN---------TMLLILDRADDPVTPLLSQWTYQAMVHELLGLNNNRVKIPVHADSNKKVEEVVLSCtQDSFFAKHRYSNFGDLGGAVKQLLDEYQAQT-HMNERISTIEDMQQFVQRYPAFRSQSLNVSKHVSLVSELGRLVDICDLMEVSQLEQDIACNEDRTTQ-WRSVLEKLANPQIKAPDKLRIALLYCLR-YEDSVNLDRLKAALDDAHLPPEKIILIDAILKYAGKRAR---G--PGLFGAHKSVLAKMTHSLKTSLEGVENVYAQHVPLLSDLIDLITKQKL-KDNLFPAVSCVS------------A-----------AKPAQLIVFMVGGTTYEEATKIAEINTSPTAGIKILLGGTYIHNSTSFLDDL 527
                 99******************************99*******************************************************************************99988888888999999888899999**************83557****9956666666666666655.3344444444.........56*************************************88888877789***********************************664.47899**************************************************************.777999999*******************.99************************************8...3..34455555556677889999****************************.5*******9877............2...........34567********************************************986 PP

>> PF03808.8  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.3     6e+03      87     107 ..      86     106 ..      79     106 .. 0.84
   2 ?    9.9   0.0   8.7e-05       0.4      36      85 ..     400     449 ..     395     485 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.3
  PF03808.8  87 eeeeeaiieeInaskadlvlv 107
                e++e + +++++++ ad+v v
  MMETSP0890-20130614|945_1  86 EADETESVRQVQEFYADYVAV 106
                678899999999999999976 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 8.7e-05
  PF03808.8  36 lipalleaaaekglrvfllGakeevlekaaerlkarypglkivgvrdgyf 85 
                li+a+l++a ++     l+Ga + vl+k+   lk   +g++ v++++ ++
  MMETSP0890-20130614|945_1 400 LIDAILKYAGKRARGPGLFGAHKSVLAKMTHSLKTSLEGVENVYAQHVPL 449
                8999***************************************9999866 PP

>> PF00317.16  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00027       1.2       4      71 ..      69     157 ..      66     160 .. 0.81
   2 ?    0.0   0.0      0.15   6.7e+02       7      32 ..     267     292 ..     266     302 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00027
  PF00317.16   4 tynalkvlearYllkdengeivEspqqmfmRvAlalaiaealyd.....................kleedkdlaeefydlmssqkflpa 71 
                  ++ ++vl++  l++ ++ +  Es++q+ +  A ++a +e l+                      k e  ++ + +   ++ s+k +p+
   MMETSP0890-20130614|945_1  69 HVFFANVLPNEMLRRLAEADETESVRQVQEFYADYVAVNEDLFTvnqrsslrlsnddrgdtvttrKNEMIERNISAILSALLSLKTQPS 157
                 567799***********99*********************9888888999999888888887666666666666666677777776666 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.15
  PF00317.16   7 alkvlearYllkdengeivEspqqmf 32 
                 a+k l + Y  ++  +e + ++++m 
   MMETSP0890-20130614|945_1 267 AVKQLLDEYQAQTHMNERISTIEDMQ 292
                 57888899999888777666666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.46s 00:00:01.42 Elapsed: 00:00:00.89
# Mc/sec: 1437.81
//
Query:       MMETSP0890-20130614|954_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-19   69.7   0.0    1.7e-19   69.6   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
      2e-08   33.7   0.0    9.7e-06   25.1   0.0    2.1  2  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
       0.87    9.5   4.0         57    3.7   2.8    2.3  1  PF05345.7 Putative Ig domain


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   3.7e-23   1.7e-19      26      84 ..       2      60 ..       1      61 [] 0.61

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 3.7e-23
  PF13306.1 26 IgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslk 84
               IgeyaFs+cssl+++tlp  lt+i   aFs+c+slt+it+p  lt+ig +aF nc+sl+
  MMETSP0890-20130614|954_1  2 IGEYAFSGCSSLTHLTLPAGLTTIRVDAFSGCTSLTQITLPAGLTTIGHSAFVNCTSLT 60
               66666666666666666666666666666666666666666666666666666666665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.1e-09   9.7e-06      16      56 ..       2      41 ..       1      43 [. 0.95
   2 !    6.7   0.0    0.0012       5.4      13      28 ..      45      60 ..      43      61 .] 0.82

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.1e-09
  PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
               i++ aF+g+s+L++L L    l++i  +af+g++sL+++ L
  MMETSP0890-20130614|954_1  2 IGEYAFSGCSSLTHLTLP-AGLTTIRVDAFSGCTSLTQITL 41
               7899**************.*******************988 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0012
  PF13855.1 13 lkvipdgaFkglsnLk 28
               l++i+++aF ++++L+
  MMETSP0890-20130614|954_1 45 LTTIGHSAFVNCTSLT 60
               7889999999999886 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.8     0.013        57       5      17 ..      34      46 ..       4      47 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.013
  PF05345.7  5 ttpgsngLPsGLt 17
               t  ++ +LP+GLt
  MMETSP0890-20130614|954_1 34 TSLTQITLPAGLT 46
               3335667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 232.03
//
Query:       MMETSP0890-20130614|951_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.4   0.1      0.015   15.1   0.1    2.3  1  PF00307.26 Calponin homology (CH) domain


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.1e-06     0.015       4      93 ..     382     462 ..     379     486 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHT.ST- CS
  PF00307.26   4 llrWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlvdlediskclkesvadsleNlqlalefaeeklgvscvl..tledlly.sgn 93 
                 + +Wi++v++    +   + ++++lsDG +L+ l +k++ +++dl+++  +          +l  +l + ++++ ++  +  +++dll+ +++
   MMETSP0890-20130614|951_1 382 ARKWIEQVTG----IEFHKPFLEELSDGKLLCILANKIKLNSLDLDQL--S------IPRVRLDAFLTLLHDEFRLPPEHlfQSDDLLNnETK 462
                 6789999997....33556889**************************..5......456688888888888888776666799999876333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.85
# Mc/sec: 1984.75
//
Query:       MMETSP0890-20130614|960_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-06   27.4   0.0      2e-05   24.1   0.0    2.4  2  PF00027.24 Cyclic nucleotide-binding domain
    6.3e-05   22.6   0.0    0.00063   19.4   0.0    2.0  2  PF04831.8  Popeye protein conserved region


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     3e-09     2e-05       4      89 ..      10      99 ..       8     101 .. 0.93
   2 ?    0.0   0.0     0.099   6.7e+02      18      58 ..     218     253 ..     215     280 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3e-09
                E----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS.........B-SSEEEEEEEEEEEEEEHHHHHHHHCC- CS
  PF00027.24  4 fkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltge.........prsatvvaltdvevlvipredfrellekn 89
                f   + +  +G++ ++l+  + G+++v++n++         + p +++Ge a+l +           + at+va+  + ++++p+++++++ +++
   MMETSP0890-20130614|960_1 10 FSNRQALTVQGEEVEHLFCTVNGWFEVITNGQRVA-----SIPPFQIIGEVAMLENLqsengqfhqAARATIVAEPGSLFVRWPHSKLYSFQKSD 99
                677888999***********************988.....8***********************************************9987765 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.099
                 -EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCS CS
  PF00027.24  18 dslyiilsGkvkvykndedgkesilaelgpGdffGelallt 58 
                 +++  +lsG++ vy ++ + +     +l++  ++G   +l 
   MMETSP0890-20130614|960_1 218 RRMLALLSGSATVYDSGLKLQ-----TLTAPRLIGVEPFLE 253
                 567889999999999888776.....666666666666655 PP

>> PF04831.8  Popeye protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.2e-08   0.00063      46     140 ..      22     120 ..       8     129 .. 0.83
   2 ?    0.8   0.0     0.047   3.2e+02      75     120 ..     251     295 ..     213     312 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.2e-08
  PF04831.8  46 sidrLslllsGrikvslegqfLhyifpfqflDsPe.weslrpseegaf.q...vtltadedcrylsWrrkkLklllakerylarlfsvllgkDiaekLys 140
                ++++L   ++G  +v ++gq +  i pfq +      e l  se+g+f q    t++a+  + ++ W+ +kL+ + ++++  ar   + + + +++kL s
  MMETSP0890-20130614|960_1  22 EVEHLFCTVNGWFEVITNGQRVASIPPFQIIGEVAmLENL-QSENGQFhQaarATIVAEPGSLFVRWPHSKLYSFQKSDESFARAIRLAISRTLSHKLGS 120
                6999999************************876515666.56666663443369************************************999999965 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.047
  PF04831.8  75 flDsPeweslrpseegafqvtltadedcrylsWrrkkLklllaker 120
                fl++  + s r s+ +  q  l  +  ++ lsW+ + L  +l++  
  MMETSP0890-20130614|960_1 251 FLEALLF-SSRRSQSKSEQLILHLEPGSQLLSWNIRDLAPMLSTSV 295
                4444444.456788888999999999*******9999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.68
# Mc/sec: 1247.52
//
Query:       MMETSP0890-20130614|961_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-17   62.1   6.0    7.4e-17   61.8   4.2    1.0  1  PF01086.12 Clathrin light chain
  ------ inclusion threshold ------
      0.013   14.6   1.8      0.015   14.3   1.2    1.0  1  PF11678.3  Protein of unknown function (DUF3274)
      0.024   14.1   1.9      0.043   13.3   1.2    1.6  1  PF09733.4  VEFS-Box of polycomb protein
      0.043   13.5   2.5      0.063   13.0   0.4    2.1  2  PF13838.1  Clathrin-H-link
      0.082   12.0   0.8       0.11   11.7   0.6    1.1  1  PF00459.20 Inositol monophosphatase family
        0.1   12.0   1.7       0.12   11.7   1.2    1.0  1  PF11997.3  Domain of unknown function (DUF3492)
       0.23   10.1   7.0       0.28    9.8   4.8    1.1  1  PF07946.9  Protein of unknown function (DUF1682)
        3.2    7.3   5.6        4.7    6.8   3.9    1.2  1  PF06212.7  GRIM-19 protein
        5.2    7.1   7.8         22    5.2   3.4    2.3  2  PF07384.6  Protein of unknown function (DUF1497)


Domain annotation for each model (and alignments):
>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   4.2   4.9e-20   7.4e-17     120     223 ..      28     128 ..      18     130 .. 0.91

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 4.9e-20
  PF01086.12 120 erdkeieerdeasekkkeeliekAkkeiddfYenynekkektkaqtrkeeeeflaerddtskdgTeWervakLvdfsdkgskqgkdksRfrelLlsLKkdeqaP 223
                 + ++ i++r+e+++ k +e +e Ak+ +++f ++ ++k+  + +++r++e+ ++++  +  +    W+r++ Lvd++   s ++ d+sR+r++L++LK   + P
   MMETSP0890-20130614|961_1  28 KFNEAIRQREEQEASKLAENKERAKEALENFEAERQTKLRESMQNNREAEQLLMEQLASDIESENPWDRIVSLVDLQTGMSDETLDVSRMRQVLIQLK---NSP 128
                 67899**********************************99999999887777777777788999*********************************...555 PP

>> PF11678.3  Protein of unknown function (DUF3274)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2     1e-05     0.015     133     239 ..      15     124 ..       4     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1e-05
  PF11678.3 133 eeleeeeaqeveaafNegkeiddqtkvlrvkestssssgtivvqReeTpnEvrarlqkded..aleensYHSavlrspenhRwvtAmDvaiGqa.ksldDpewrelLiav 239
                +++++    e++a+fNe     +  ++++ +e+++ +++ +  + +e     r+ +q++++  +l  +   S + + +   R v  +D+  G + ++ld   +r++Li++
  MMETSP0890-20130614|961_1  15 QNGNRMPDMELQAKFNEAIRQREEQEASKLAENKERAKEALENFEAERQTKLRESMQNNREaeQLLMEQLASDIESENPWDRIVSLVDLQTGMSdETLDVSRMRQVLIQL 124
                555566667899****8777777777777777777777767777777777777778776651145578899*********************87369**********986 PP

>> PF09733.4  VEFS-Box of polycomb protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.2   2.8e-05     0.043      25      78 ..      73     127 ..      45     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-05
  PF09733.4  25 setaqpleleevlsdrDSEdevDddildle.erqmldefvdvneeekrlmklWNl 78 
                 ++a  l +e++ sd+ SE+  D  +  ++ ++ m de  dv+   + l++l N+
  MMETSP0890-20130614|961_1  73 NREAEQLLMEQLASDIESENPWDRIVSLVDlQTGMSDETLDVSRMRQVLIQLKNS 127
                46788999***************65543331446889**********99999997 PP

>> PF13838.1  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   4.1e-05     0.063       6      46 ..      22      58 ..      17      68 .. 0.82
   2 ?   -0.6   0.0      0.75   1.1e+03       3      19 ..      74      90 ..      72      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.1e-05
  PF13838.1  6 ddlyiqqFnellaqgqyeeAAkvAansprgiLRtpetiqrF 46
               d  ++ +Fne ++q++ +eA k+A n      R +e +++F
  MMETSP0890-20130614|961_1 22 DMELQAKFNEAIRQREEQEASKLAENKE----RAKEALENF 58
               667899*******************998....555555555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.75
  PF13838.1  3 pgaddlyiqqFnellaq 19
               ++a++l+++q+ + +++
  MMETSP0890-20130614|961_1 74 REAEQLLMEQLASDIES 90
               7899*****99876665 PP

>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6     7e-05      0.11       9      90 ..      22     102 ..      19     102 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHHHHCC-HCCHSEEEH..-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHCHHHHC--B...---.EEEEEE CS
  PF00459.20   9 avelaakagevlreafsnslvveekeksgeedlvtaadkaveelilealaakfpgdkilgeetlaagekselgesgltwvvD 90 
                 ++el+ak+ e++r++++++++  ++ k+ +++ +++   + +  ++e+++ ++  +++l e+  +++e se + ++ + +vD
   MMETSP0890-20130614|961_1  22 DMELQAKFNEAIRQREEQEASKLAENKERAKEALENFEAERQTKLRESMQNNREAEQLLMEQLASDIE-SENPWDRIVSLVD 102
                 799**************777777777789*******************************99999999.9999998888887 PP

>> PF11997.3  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.2   7.8e-05      0.12      64     171 ..      24     130 ..      15     133 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.8e-05
  PF11997.3  64 ylveeeeasaapkkkkgekealetleellealkeeeaeeeellkelleelaeka..kklsledfleskeaweilteqyeeeceepsftdvfwtvrlllspllallaeelp 171
                +l+ + +++  ++++++ ++ +e  e+  eal++ eae+++ l+e +++ +e +     +l++ +es++ w+ + + ++    ++ ++d +  v+ + + l++l ++++ 
  MMETSP0890-20130614|961_1  24 ELQAKFNEAIRQREEQEASKLAENKERAKEALENFEAERQTKLRESMQNNREAEqlLMEQLASDIESENPWDRIVSLVDL---QTGMSDETLDVSRMRQVLIQLKNSPPS 130
                55555555555557788899999999**********99888888888888887722233344557888889999888887...689999999999999999996555544 PP

>> PF07946.9  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.8   0.00018      0.28     255     318 ..      12      74 ..       1      76 [. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00018
  PF07946.9 255 evlkkvkklReevekkllkakeeerqEeaqekkeekkkeereaklaklsaeeqrKleeKerkke 318
                  l++ +++ +++ +  + ++  +r+E++ + k ++ ke+ ++ l++  ae+q Kl e ++  +
  MMETSP0890-20130614|961_1  12 SGLQNGNRMPDMELQAKFNEAIRQREEQE-ASKLAENKERAKEALENFEAERQTKLRESMQNNR 74 
                55666666667777777777777777755.455666666666669*************998765 PP

>> PF06212.7  GRIM-19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.9    0.0031       4.7      51      99 ..      36      83 ..      25      88 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0031
  PF06212.7 51 etnkerrreeiEklearnailpllqAErDrrylkqlrrnreeEaelmkd 99
               ++++e  + +++k  a++a+   + AEr  +  + +++nre+E+ lm +
  MMETSP0890-20130614|961_1 36 REEQEASKLAENKERAKEALE-NFEAERQTKLRESMQNNREAEQLLMEQ 83
               344555566666667777776.589**********************86 PP

>> PF07384.6  Protein of unknown function (DUF1497)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.05        77      41      55 ..      24      38 ..      20      42 .. 0.77
   2 ?    5.2   3.4     0.014        22       9      44 ..      37      72 ..      34      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.05
  PF07384.6 41 emqaefhekikklGe 55
               e+qa f e i++  e
  MMETSP0890-20130614|961_1 24 ELQAKFNEAIRQREE 38
               899999999987665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.014
  PF07384.6  9 earrisklasqnisseqtkkefeldrqskfnqemqa 44
               e +  skla     +  +  +fe +rq+k+   mq 
  MMETSP0890-20130614|961_1 37 EEQEASKLAENKERAKEALENFEAERQTKLRESMQN 72
               556789***99999999999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1703  (0.124561); expected 273.4 (0.02)
Passed bias filter:                      798  (0.0583675); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 396.43
//
Query:       MMETSP0890-20130614|964_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-49  167.1   0.0    2.1e-49  166.8   0.0    1.1  1  PF00719.14 Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> PF00719.14  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.0   1.5e-53   2.1e-49       1     155 [.      75     253 ..      75     254 .. 0.97

  Alignments for each domain:
  == domain 1    score: 166.8 bits;  conditional E-value: 1.5e-53
                 EEE-SB-TT--EEEEE-S----EEEEE......E-SSSB--SSBB--BTT---............-----BEEEE--SS---TTEEEEEEE---EEEEE---BEEEEEEEETT-CCGT...T--SGGGS-HHHHHHHHHHHHHTTTTS...TT--EEE--B--HHHHHHHHHHHHHHHH CS
  PF00719.14   1 nvviEipkgsraKyeidkeegllpvdr......llyvslkypanYGfipqtle............gDgDplDvlvlgseplapgsvvkvrvlGvlaliDegetDdKilavpvedpeyk...dikdvedlppgllkeieefFetykdle...enkfvkvegwkdaeeAlkvieeaieryk 155
                 n+++Eipk   aK+eid++++l+p+ +      l++++ ++ + YG+ipqt+e            gD+Dp+Dv+++g e+l+ gsv +v++lGvla+iD+ge D+K++a++++dp ++   di+dv   +pg+++ i+e+F++yk+++    n f ++e++  +++A+++i+e+++++k
   MMETSP0890-20130614|964_1  75 NMITEIPKMGTAKMEIDTKTELNPIVQdekkgkLRFYHGPIFWSYGCIPQTWEnpneehpqlkcfGDDDPIDVVEIGAEALEAGSVTPVKALGVLAMIDDGELDWKVIAIAESDPLFSelnDIDDVAAKCPGVISGIREWFRWYKTPDgkpINAFGFDEECLPKAKAIEIIQETHQAWK 253
                 89******************************************************************************************************************963677888888899*****************999999************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.79
# Mc/sec: 815.97
//
Query:       MMETSP0890-20130614|965_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-16   59.8   0.1    2.8e-16   59.2   0.1    1.3  1  PF13306.1 Leucine rich repeats (6 copies)
     0.0024   17.4   0.0      0.024   14.2   0.0    2.4  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.1   4.1e-20   2.8e-16      31      91 ..       1      61 [.       1      75 [. 0.49

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 4.1e-20
  PF13306.1 31 FsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipss 91
               Fs+c+sl+++t+p  lt+igeyaF++c+sl+++t+p+s+t i + aF +cs+  +i i s+
  MMETSP0890-20130614|965_1  1 FSGCTSLTHVTFPVGLTTIGEYAFEGCTSLNQLTLPDSVTDICSDAFGGCSNDLTIAITST 61
               5555555555555555555555555555555555555555555555555555444444332 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.075   5.1e+02      45      55 ..       1      11 [.       1      14 [. 0.84
   2 !   14.2   0.0   3.5e-06     0.024      13      49 ..      16      51 ..       5      52 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.075
  PF13855.1 45 fkgLpsLreLn 55
               f+g++sL+++ 
  MMETSP0890-20130614|965_1  1 FSGCTSLTHVT 11
               89999999976 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.5e-06
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLp 49
               l++i++ aF+g+++L  L L  ++ + i ++af g+ 
  MMETSP0890-20130614|965_1 16 LTTIGEYAFEGCTSLNQLTLP-DSVTDICSDAFGGCS 51
               899******************.******999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.63
# Mc/sec: 665.65
//
Query:       MMETSP0890-20130614|973_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-16   59.2   0.0    3.1e-16   59.1   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    4.8e-06   26.1   0.0     0.0043   16.6   0.0    1.9  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   4.6e-20   3.1e-16      26      77 ..       2      53 .]       1      53 [] 0.53

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 4.6e-20
  PF13306.1 26 IgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaF 77
               Ig +aF++c+sl+++t+p  lt ig+yaF +c+slt++t+p  lt+ig++aF
  MMETSP0890-20130614|973_1  2 IGYEAFRGCTSLTELTFPAGLTAIGTYAFHGCTSLTHLTLPAGLTTIGDEAF 53
               5555555555555555555555555555555555555555555555555555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00042       2.9      43      56 ..       5      18 ..       1      21 [. 0.79
   2 !   16.6   0.0   6.2e-07    0.0043      13      45 ..      22      53 .]      19      53 .] 0.90

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00042
  PF13855.1 43 eafkgLpsLreLnL 56
               eaf g++sL+eL +
  MMETSP0890-20130614|973_1  5 EAFRGCTSLTELTF 18
               78999999998875 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 6.2e-07
  PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeaf 45
               l+ i++ aF+g+++L++L L    l++i +eaf
  MMETSP0890-20130614|973_1 22 LTAIGTYAFHGCTSLTHLTLP-AGLTTIGDEAF 53
               889999999999999999999.99999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        95  (0.00694851); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.36s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 198.45
//
Query:       MMETSP0890-20130614|970_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:01.17
# Mc/sec: 1343.60
//
Query:       MMETSP0890-20130614|975_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-43  147.7   3.8      3e-43  147.5   2.6    1.0  1  PF00213.13 ATP synthase delta (OSCP) subunit


Domain annotation for each model (and alignments):
>> PF00213.13  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   2.6   2.2e-47     3e-43       1     171 [.      32     203 ..      32     204 .] 0.96

  Alignments for each domain:
  == domain 1    score: 147.5 bits;  conditional E-value: 2.2e-47
  PF00213.13   1 varrYAkAlfelakekgaldeveeelealkavlaedkklkellsnpavsaeekkdllkkvfkgklseavknflklLaenkRlallpeiaeefeelaaeaegiveaeVtsavpltdeqlkklkaaL.ekklgkkkvkleekvdpsliGGvvikvgdkviDgSvkgkLerlkeq 171
                 +  rYA+A+f +a++++ l +ve e+ a+k+ l+++k+l+++++np++s+e k +++++++++++s ++kn+l +La n Rla +++++++f++l+++++++v+a +tsa+plt++q  ++++aL  +  + +kv+l++kvdps++GG++i +gdk++D S ++k++ l+++
   MMETSP0890-20130614|975_1  32 IHARYATAAFVAASKAKVLPQVEMEMLAFKDNLQKSKELANYVENPTISREAKISAMEALAGDNFSHITKNTLVTLAANARLAQVDKVIDAFSSLMKAHRKEVDAVITSAEPLTKAQTRAISSALtPHIKQGEKVVLSTKVDPSILGGLTILIGDKFLDLSAAAKIAALQRA 203
                 5679*************************************************************************************************************************644445568***********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 678.97
//
Query:       MMETSP0890-20130614|976_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.092   11.9   0.1      0.092   11.9   0.1    1.0  1  PF02278.13 Polysaccharide lyase family 8, super-sandwich domain


Domain annotation for each model (and alignments):
>> PF02278.13  Polysaccharide lyase family 8, super-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.7e-06     0.092     169     214 ..       5      49 ..       1      52 [] 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.7e-06
                 TTS--EEEETCEEE..ESS-EEEEEEEE-SSCCG-E-EEEEEEEEE CS
  PF02278.13 169 sklgytgyvndkkitlvkaqetksvfleskeskkniGyyflkkskl 214
                 s+l++ +  +d +i+ ++ ++++  fl+sk sk++ G yf +k++ 
   MMETSP0890-20130614|976_1   5 SELSTLISYDD-DISHMSSNDSNINFLKSKTSKEQLGLYFNPKTSA 49 
                 55555555555.8999999999******************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.91
# Mc/sec: 136.93
//
Query:       MMETSP0890-20130614|972_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-93  302.4  19.8    9.2e-13   47.3   0.1    9.0  9  PF00514.18 Armadillo/beta-catenin-like repeat
    1.6e-32  111.4   0.1    9.3e-10   38.5   0.0    6.6  6  PF13646.1  HEAT repeats
    5.5e-27   93.5   7.9      8e-10   38.9   0.1    7.0  9  PF13513.1  HEAT-like repeat
    2.2e-25   86.2   3.8    1.9e-05   24.2   0.0    8.2  8  PF02985.17 HEAT repeat
    4.7e-19   68.2   5.3    8.4e-19   67.4   3.7    1.4  1  PF01749.15 Importin beta binding domain
    3.9e-10   39.1   0.0      0.001   18.1   0.0    3.8  4  PF04826.8  Armadillo-like
    1.5e-07   31.1   0.8       0.92   10.0   0.0    5.8  5  PF03130.11 PBS lyase HEAT-like repeat
    4.4e-06   25.1   0.0      0.017   13.4   0.0    2.9  2  PF01602.15 Adaptin N terminal region
    7.5e-05   22.5   0.0       0.53   10.0   0.0    4.4  5  PF11698.3  V-ATPase subunit H
    0.00021   19.5   0.3    0.00093   17.4   0.0    2.1  3  PF10508.4  Proteasome non-ATPase 26S subunit
      0.001   18.4   0.5        9.8    5.7   0.0    5.4  7  PF08216.6  Eukaryotic domain of unknown function (DUF1716)


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.65   8.1e+02      14      33 ..      79     101 ..      67     102 .. 0.73
   2 !   45.3   0.0   3.3e-15   4.1e-12       2      41 .]     113     153 ..     112     153 .. 0.97
   3 !   46.9   0.0     1e-15   1.3e-12       3      40 ..     157     194 ..     155     195 .. 0.95
   4 !   34.3   0.0   9.3e-12   1.2e-08       1      41 []     197     238 ..     197     238 .. 0.96
   5 !   33.4   0.0   1.9e-11   2.4e-08      13      41 .]     251     279 ..     245     279 .. 0.95
   6 !   38.1   0.0     6e-13   7.4e-10       2      40 ..     282     320 ..     281     321 .. 0.95
   7 !   39.0   0.0   3.1e-13   3.9e-10       2      41 .]     324     363 ..     323     363 .. 0.95
   8 !   47.3   0.1   7.4e-16   9.2e-13       4      40 ..     368     404 ..     365     405 .. 0.94
   9 !   24.2   0.2   1.4e-08   1.8e-05       1      40 [.     408     447 ..     408     448 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.65
                 HHHHHHHHC...-SSHHHHHHHH CS
  PF00514.18  14 vppLvqLLk...sgdeevqeeAa 33 
                 +++L qL      +d++vq eA+
   MMETSP0890-20130614|972_1  79 LEQLPQLVAgvhAMDPKVQIEAT 101
                 55566666666699*****9998 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 3.3e-15
                 HHHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   2 penkqavieaGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                 ++++q+vi+aG+vp+Lvq+L+ ++ + +q+eAawAL+N+a+
   MMETSP0890-20130614|972_1 113 NPPIQMVIDAGVVPKLVQFLSkDETPALQFEAAWALTNIAS 153
                 789************************************96 PP

  == domain 3    score: 46.9 bits;  conditional E-value: 1e-15
                 HHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18   3 enkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                 ++++ vi++Gavp++++LL s++++v+e+A+wAL+N+a
   MMETSP0890-20130614|972_1 157 DHTRVVIQEGAVPIFCRLLLSPNDDVREQAVWALGNIA 194
                 68899********************************8 PP

  == domain 4    score: 34.3 bits;  conditional E-value: 9.3e-12
                 CHHHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   1 spenkqavieaGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                 sp ++++v ++Ga++pL+  L+ + + +++++A+w+LsN ++
   MMETSP0890-20130614|972_1 197 SPNCRDLVLREGAMQPLLTQLHeNSKLSMLRNATWTLSNFCR 238
                 6889***********************************996 PP

  == domain 5    score: 33.4 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  13 avppLvqLLksgdeevqeeAawALsNLaa 41 
                 a+p L qL++s+deev+++A+wALs+L++
   MMETSP0890-20130614|972_1 251 ALPTLAQLIYSPDEEVLTDACWALSYLSD 279
                 89*************************95 PP

  == domain 6    score: 38.1 bits;  conditional E-value: 6e-13
                 HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18   2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                 ++ +qavieaG+ ++Lv+LL +++++vq++A+++++N+ 
   MMETSP0890-20130614|972_1 282 NDKIQAVIEAGVCRRLVELLMHPSPSVQTPALRTVGNIV 320
                 6789*********************************96 PP

  == domain 7    score: 39.0 bits;  conditional E-value: 3.1e-13
                 HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41 
                 + ++q++i+  a+p L++LL ++++++++eA+w++sN++a
   MMETSP0890-20130614|972_1 324 DLQTQIIINFSALPCLLNLLGNPKKGIRKEACWTISNITA 363
                 6699**********************************96 PP

  == domain 8    score: 47.3 bits;  conditional E-value: 7.4e-16
                 HHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18   4 nkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                 ++qavi+a+++ppL++LL+s   ++++eAawA+sN +
   MMETSP0890-20130614|972_1 368 QIQAVIDANIIPPLINLLNSAEFDIRKEAAWAISNAT 404
                 89*********************************76 PP

  == domain 9    score: 24.2 bits;  conditional E-value: 1.4e-08
                 CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18   1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                 +p++++ ++ + ++ppL++LL+  d ++  +A+ AL N+ 
   MMETSP0890-20130614|972_1 408 TPQQIKFLVSQACIPPLCELLSVADVKIIVVALEALENIL 447
                 589******999**************************95 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.5e-06    0.0019       1      60 [.      82     153 ..      53     164 .. 0.81
   2 !   38.5   0.0   7.5e-13   9.3e-10       1      86 [.     125     232 ..     125     234 .. 0.80
   3 !   18.4   0.0   1.4e-06    0.0017       2      69 ..     211     290 ..     210     292 .. 0.74
   4 !   21.3   0.0   1.8e-07   0.00022       4      68 ..     297     373 ..     295     375 .. 0.80
   5 !   20.8   0.1   2.5e-07   0.00031      29      87 ..     374     443 ..     368     444 .. 0.78
   6 !    7.4   0.0    0.0037       4.6       1      56 [.     421     496 ..     421     508 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.5e-06
  PF13646.1   1 leaLlaaLekdpdpevraaaieaLg...........ql.gseealpaLlelL.kdsdpevRraAaeaLgklgd 60 
                l++L+a + +  dp+v+ +a                q+  ++ ++p+L+++L kd+ p+++ +Aa+aL ++++
  MMETSP0890-20130614|972_1  82 LPQLVAGV-HAMDPKVQIEATTQFRkllsiernppiQMvIDAGVVPKLVQFLsKDETPALQFEAAWALTNIAS 153
                57888888.89999999999999996555533333322133466********789***************975 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 7.5e-13
  PF13646.1   1 leaLlaaLekdpdpevraaaieaLgqlgseea...........lpaLlelLkdsdpevRraAaeaLgklg...........dpealpaLlklldddedavvreaaaea 86 
                +++L++ L kd+ p ++ +a++aL +++s +a           +p+  +lL +++ +vR++A++aLg+++            + a+++Ll  l + ++  + + a+ +
  MMETSP0890-20130614|972_1 125 VPKLVQFLSKDETPALQFEAAWALTNIASGTAdhtrvviqegaVPIFCRLLLSPNDDVREQAVWALGNIAgdspncrdlvlREGAMQPLLTQLHENSKLSMLRNATWT 232
                689**********************999997777777777777**************************656555555554466888888888877765554555655 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 1.4e-06
  PF13646.1   2 eaLlaaLekdpdpevraaaieaLgqlgse..........ealpaLlelLkdsdpevRraAaeaLgklgd..pealpaLlk 69 
                ++Ll +L +++  +  ++a ++L+++              alp+L +l+ ++d+ev   A++aL+ l+d  ++ ++a ++
  MMETSP0890-20130614|972_1 211 QPLLTQLHENSKLSMLRNATWTLSNFCRGkpqpefltvrPALPTLAQLIYSPDEEVLTDACWALSYLSDgpNDKIQAVIE 290
                67888896677777888999999955332224445544467**************************7543666777665 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 1.8e-07
  PF13646.1   4 LlaaLekdpdpevraaaieaLg......qlgse........ealpaLlelLkdsdpevRraAaeaLgkl..gdpealpaLl 68 
                L+++L  +p+p+v+  a+++ g      +            +alp+Ll lL ++   +R++A++ ++++  g++  ++a +
  MMETSP0890-20130614|972_1 297 LVELL-MHPSPSVQTPALRTVGnivtgdD---LqtqiiinfSALPCLLNLLGNPKKGIRKEACWTISNItaGNKTQIQAVI 373
                88988.8***************5555552...14446666688*************************9666777777765 PP

  == domain 5    score: 20.8 bits;  conditional E-value: 2.5e-07
  PF13646.1  29 seealpaLlelLkdsdpevRraAaeaLgkl...g.........dpealpaLlklldddedavvreaaaeaL 87 
                +++++p+L+ lL++ + ++R++Aa+a+++    g         +++++p+L++ll   +  ++   a+eaL
  MMETSP0890-20130614|972_1 374 DANIIPPLINLLNSAEFDIRKEAAWAISNAtsgGtpqqikflvSQACIPPLCELLSVADVKII-VVALEAL 443
                67889***********************98554255556666678889999999887777664.4556666 PP

  == domain 6    score: 7.4 bits;  conditional E-value: 0.0037
  PF13646.1   1 leaLlaaLekdpdpevraaaieaLg...qlgseea..................lpaLlelLkdsdpevRraAaeaLg 56 
                +++L+++L + +d ++   a+eaL    ++g++ea                  l+++ +l ++++ ++ ++A++ L 
  MMETSP0890-20130614|972_1 421 IPPLCELL-SVADVKIIVVALEALEnilKIGEAEAkathshnlmathiaeadgLKKIEDLQQHDNHDIYEKAVRILE 496
                68999*99.999***999*******8887788888888888888888888888********************9997 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         5   6.3e+03       4      34 ..      53      80 ..      53      87 .. 0.60
   2 ?   -1.4   0.0       2.9   3.6e+03      24      34 ..     123     133 ..     118     137 .. 0.66
   3 !   38.9   0.1   6.4e-13     8e-10       1      55 []     138     193 ..     138     193 .. 0.91
   4 ?    1.5   0.0      0.34   4.3e+02      29      54 ..     209     235 ..     202     236 .. 0.66
   5 !   15.7   0.0   1.2e-05     0.015       5      54 ..     227     276 ..     224     277 .. 0.78
   6 ?    2.0   0.0      0.25   3.1e+02      33      55 .]     297     319 ..     295     319 .. 0.89
   7 !   22.3   0.0   1.1e-07   0.00013       1      55 []     306     361 ..     306     361 .. 0.83
   8 !   13.6   0.0   5.7e-05      0.07      27      54 ..     375     402 ..     363     403 .. 0.82
   9 ?   -0.4   0.1       1.4   1.7e+03      27      48 ..     418     437 ..     409     446 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 5
  PF13513.1  4 RraAawaLGrlaggeprllepavpellpaLl 34
               R a ++a G   ++  ++ +++ ++++++L 
  MMETSP0890-20130614|972_1 53 RTANINAMG---QNPNQTSQQIDTAVVQKLE 80
               677788887...4444445555555555554 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.9
  PF13513.1  24 pavpellpaLl 34 
                 +vp+l+++L+
  MMETSP0890-20130614|972_1 123 GVVPKLVQFLS 133
                46677777776 PP

  == domain 3    score: 38.9 bits;  conditional E-value: 6.4e-13
  PF13513.1   1 wrvRraAawaLGrlaggeprllep.avpellpaLlelLeddddeVReaAawALgrl 55 
                ++++++AawaL ++a g++++ +  +++ ++p ++ lL +++d+VRe+A+wALg++
  MMETSP0890-20130614|972_1 138 PALQFEAAWALTNIASGTADHTRVvIQEGAVPIFCRLLLSPNDDVREQAVWALGNI 193
                6899*******88888888886666*****************************98 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.34
  PF13513.1  29 llpaLlelL.eddddeVReaAawALgr 54 
                ++++Ll  L e+++ +  ++A w+L++
  MMETSP0890-20130614|972_1 209 AMQPLLTQLhENSKLSMLRNATWTLSN 235
                3444444554555558899******98 PP

  == domain 5    score: 15.7 bits;  conditional E-value: 1.2e-05
  PF13513.1   5 raAawaLGr....laggeprllepavpellpaLlelLedddd.eVReaAawALgr 54 
                r+A w+L++     +++e  +++pa+p l ++       ++d eV + A+wAL+ 
  MMETSP0890-20130614|972_1 227 RNATWTLSNfcrgKPQPEFLTVRPALPTLAQLIY-----SPDeEVLTDACWALSY 276
                7899999888777777777778877777777777.....7776**********85 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.25
  PF13513.1  33 LlelLeddddeVReaAawALgrl 55 
                L+elL++++++V++ A+++ g++
  MMETSP0890-20130614|972_1 297 LVELLMHPSPSVQTPALRTVGNI 319
                999*********99999998887 PP

  == domain 7    score: 22.3 bits;  conditional E-value: 1.1e-07
  PF13513.1   1 wrvRraAawaLGrlaggeprllep...avpellpaLlelLeddddeVReaAawALgrl 55 
                ++v+  A++++G++   ++++l++   ++  +lp+Ll+lL ++++ +R+ A+w+++++
  MMETSP0890-20130614|972_1 306 PSVQTPALRTVGNIV--TGDDLQTqiiINFSALPCLLNLLGNPKKGIRKEACWTISNI 361
                679999999999955..34444444569****************************98 PP

  == domain 8    score: 13.6 bits;  conditional E-value: 5.7e-05
  PF13513.1  27 pellpaLlelLedddd.eVReaAawALgr 54 
                  ++p+L++lL+ + + ++R+ AawA+++
  MMETSP0890-20130614|972_1 375 ANIIPPLINLLN-SAEfDIRKEAAWAISN 402
                5799*******5.444899********97 PP

  == domain 9    score: -0.4 bits;  conditional E-value: 1.4
  PF13513.1  27 pellpaLlelLeddddeVReaA 48 
                ++++p+L+elL  + ++V+ ++
  MMETSP0890-20130614|972_1 418 QACIPPLCELL--SVADVKIIV 437
                68999999999..766665555 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00061      0.76       1      30 [.     124     154 ..     124     155 .. 0.90
   2 !   24.2   0.0   1.5e-08   1.9e-05       2      28 ..     168     194 ..     167     196 .. 0.96
   3 ?   -0.9   0.0       1.7   2.1e+03      18      29 ..     227     238 ..     211     239 .. 0.78
   4 !    7.1   0.0    0.0046       5.7       2      28 ..     252     278 ..     251     280 .. 0.92
   5 !    9.7   0.0   0.00071      0.88       4      28 ..     296     320 ..     293     322 .. 0.91
   6 !   11.6   0.0   0.00018      0.22       2      28 ..     336     362 ..     335     364 .. 0.94
   7 !   12.7   0.0   7.5e-05     0.093       1      25 [.     377     401 ..     377     406 .. 0.94
   8 ?    3.0   0.1     0.098   1.2e+02       2      29 ..     421     448 ..     420     450 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00061
                 HHHHHHHHHT.SSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   1 llPlllklln.DpspeVReaAaeaLgalaev 30 
                 ++P l++ l+ D++p     Aa+aL+++a++
   MMETSP0890-20130614|972_1 124 VVPKLVQFLSkDETPALQFEAAWALTNIASG 154
                 57999989998*****************975 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                 +P++++ll +p+ +VRe+A++aLg++a
   MMETSP0890-20130614|972_1 168 VPIFCRLLLSPNDDVREQAVWALGNIA 194
                 79***********************97 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHH CS
  PF02985.17  18 eaAaeaLgalae 29 
                 ++A+++L+++++
   MMETSP0890-20130614|972_1 227 RNATWTLSNFCR 238
                 6899***99997 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0046
                 HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                 lP l +l+ +p++eV   A++aL+ l+
   MMETSP0890-20130614|972_1 252 LPTLAQLIYSPDEEVLTDACWALSYLS 278
                 8**********************9876 PP

  == domain 5    score: 9.7 bits;  conditional E-value: 0.00071
                 HHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   4 lllkllnDpspeVReaAaeaLgala 28 
                  l++ll +psp+V   A++++g+++
   MMETSP0890-20130614|972_1 296 RLVELLMHPSPSVQTPALRTVGNIV 320
                 699********************98 PP

  == domain 6    score: 11.6 bits;  conditional E-value: 0.00018
                 HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                 lP+ll+ll  p   +R+ A+++++++ 
   MMETSP0890-20130614|972_1 336 LPCLLNLLGNPKKGIRKEACWTISNIT 362
                 8***********************997 PP

  == domain 7    score: 12.7 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHTSSSHHHHHHHHHHHH CS
  PF02985.17   1 llPlllkllnDpspeVReaAaeaLg 25 
                 ++P+l++lln+ + ++R+ Aa+a++
   MMETSP0890-20130614|972_1 377 IIPPLINLLNSAEFDIRKEAAWAIS 401
                 89*********************97 PP

  == domain 8    score: 3.0 bits;  conditional E-value: 0.098
                 HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalae 29 
                 +P+l++ll+  + ++   A+eaL ++++
   MMETSP0890-20130614|972_1 421 IPPLCELLSVADVKIIVVALEALENILK 448
                 8**********************99987 PP

>> PF01749.15  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   3.7   6.8e-22   8.4e-19       6      97 .]      13     103 ..       9     103 .. 0.93

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 6.8e-22
                 X---GGGSTT----HHHHHHHHHHHHHHHHHHHHHHHHHCCHT--XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
  PF01749.15   6 eeeRrksYKnkgvdaeelRrrReeeevelRKnKreeqllKrRnvllqeedsaeeeseleksskasklsselpvlvqevnsddseeqleatqa 97 
                    R++ +K   vd e++RrrRee ++++RKnK+ee llKrR  ++++  ++ ++++++ + ++ ++ ++lp+lv++v + d++ q+eat++
   MMETSP0890-20130614|972_1  13 RSGRKQAFKKG-VDFEDARRRREETTIQIRKNKKEERLLKRRTANINAMGQNPNQTSQQIDTAVVQKLEQLPQLVAGVHAMDPKVQIEATTQ 103
                 5689*****88.8***********************************9999988888888889*************************986 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.6e-05     0.032       9      86 ..     120     198 ..     115     203 .. 0.86
   2 !   18.1   0.0     8e-07     0.001       8     187 ..     204     388 ..     197     391 .. 0.81
   3 !    7.2   0.0    0.0018       2.2      17      99 ..     339     420 ..     334     437 .. 0.75
   4 ?    2.6   0.2     0.044        54     191     253 ..     434     491 ..     409     492 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
  PF04826.8   9 Lepeelekllallestedpliqeialitlgnsaaysfnqd.iirelggipiianllsksnpevkekalnalnnlsvnve 86 
                +++    kl++ l + e p++q  a  +l+n a  ++ +  ++ + g +pi   ll ++n  v+e+a+ al n++  + 
  MMETSP0890-20130614|972_1 120 IDAGVVPKLVQFLSKDETPALQFEAAWALTNIASGTADHTrVVIQEGAVPIFCRLLLSPNDDVREQAVWALGNIAGDSP 198
                56666789************************99998764366778**************************9976655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 8e-07
  PF04826.8   8 iLepeelekllallestedpliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqkkikvyvn.qvcedivvspln..sevQlagLrLltnltvtneyqh.lla..syisellsLLskGnektkvqvLkvllnlse.NpamtreLlsakvpssllslfnkk 187
                +L    ++ ll+ l+  ++ ++ + a+ tl+n      + ++      +p++a+l+ ++++ev   a  al  ls++ ++  ki++ ++  vc+  v   +    +vQ  +Lr ++n+ + ++ q  +++  s +++ll+LL +  + ++ +    ++n+++ N++  + ++ a+    l++l n+ 
  MMETSP0890-20130614|972_1 204 VLREGAMQPLLTQLHENSKLSMLRNATWTLSNFCRGKPQPEFLTVRPALPTLAQLIYSPDEEVLTDACWALSYLSDGPND--KIQAVIEaGVCRRLVELLMHpsPSVQTPALRTVGNIVTGDDLQTqIIInfSALPCLLNLLGNPKKGIRKEACWTISNITAgNKTQIQAVIDANIIPPLINLLNSA 388
                5777778888888888888888889999999988888888998888999**************************98764..566666524777776665542157************999998752333124688999999999999***********9754999**********99999999986 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0018
  PF04826.8  17 llallestedpliqeialitlgn.saaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqkkikvyvnqvc 99 
                ll+ll   ++ + +e a  t++n  a   ++ + + +  +ip + nll++ +  +++ a  a+ n  ++    ++ik+ v+q c
  MMETSP0890-20130614|972_1 339 LLNLLGNPKKGIRKE-ACWTISNiTAGNKTQIQAVIDANIIPPLINLLNSAEFDIRKEAAWAISNATSGG-TPQQIKFLVSQAC 420
                666666666655554.4455554055555555788899*************************9876665.56789**999999 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.044
  PF04826.8 191 eillriltlfeninenlkkeaklatkeefskssLffllkeskelakklraLashsDlevkekv 253
                +i++ +l+  eni   lk ++  a k++ s++ + + + e++   kk+++L +h   ++ ek 
  MMETSP0890-20130614|972_1 434 KIIVVALEALENI---LKIGEAEA-KATHSHNLMATHIAEAD-GLKKIEDLQQHDNHDIYEKA 491
                6788888888888...66654433.35556666665566666.5799*******999988875 PP

>> PF03130.11  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.24     3e+02       2      14 ..     141     153 ..     140     176 .. 0.72
   2 !    9.6   0.0     0.001       1.2       1      14 [.     182     195 ..     182     215 .. 0.84
   3 ?    0.0   0.0       1.2   1.5e+03       3      23 ..     227     257 ..     226     259 .. 0.77
   4 ?    0.7   0.0      0.76   9.4e+02      15      26 ..     375     386 ..     350     387 .. 0.73
   5 !   10.0   0.0   0.00074      0.92       1      25 [.     392     428 ..     392     429 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.24
                 SSSHHHHCCH--S CS
  PF03130.11   2 RraAakaLgqlgd 14 
                 + +Aa+aL ++ +
   MMETSP0890-20130614|972_1 141 QFEAAWALTNIAS 153
                 568*****99987 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.001
                 TSSSHHHHCCH--S CS
  PF03130.11   1 vRraAakaLgqlgd 14 
                 vR  A++aLg++  
   MMETSP0890-20130614|972_1 182 VREQAVWALGNIAG 195
                 8**********987 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 1.2
                 SSHHHHCCH--S..........HTTHHHHHH CS
  PF03130.11   3 raAakaLgqlgd..........eeaipaLle 23 
                 r+A++ L ++              a+p+L +
   MMETSP0890-20130614|972_1 227 RNATWTLSNFCRgkpqpefltvRPALPTLAQ 257
                 7899999999887777777777778887766 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.76
                 HTTHHHHHHHCC CS
  PF03130.11  15 eeaipaLleaLq 26 
                   +ip+L+++L+
   MMETSP0890-20130614|972_1 375 ANIIPPLINLLN 386
                 6789*****997 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00074
                 TSSSHHHHCCH--S............HTTHHHHHHHC CS
  PF03130.11   1 vRraAakaLgqlgd............eeaipaLleaL 25 
                 +R +Aa+a+ + ++            +++ip+L+e+L
   MMETSP0890-20130614|972_1 392 IRKEAAWAISNATSggtpqqikflvsQACIPPLCELL 428
                 5899*******************************99 PP

>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.3e-05     0.017     117     295 ..     128     322 ..      79     331 .. 0.65
   2 !    8.1   0.1   0.00053      0.66     228     296 ..     375     450 ..     339     497 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
  PF01602.15 117 ikkllk.drspyVrkkAalailklykkdpdlvr...ke.lieeikellsdkdpgVvlaAvalleeikkndrlll.kllpklvrrLcnlltelnpwlqvkiik....lltrlarqepeersk..kellesllnllqssnnaVlletvklivelapkne......livlavnaLvrllsskdenlryvaLrnlnkilek 295
                 + + l+ d++p +  +Aa a++ + + ++d  r   +e  ++ +  ll +++  V   Av +l +i   d++++ + l +    ++ llt+l +  ++ +++    +l++ +r +p+ +    +  l++l +l++s  + Vl  ++ ++ +l++ ++      +   ++++Lv+ll +++++++  aLr+   i++ 
   MMETSP0890-20130614|972_1 128 LVQFLSkDETPALQFEAAWALTNIASGTADHTRvviQEgAVPIFCRLLLSPNDDVREQAVWALGNI-AGDSPNCrD-LVLREGAMQPLLTQLHENSKLSMLRnatwTLSNFCRGKPQPEFLtvRPALPTLAQLIYSPDEEVLTDACWALSYLSDGPNdkiqavIEAGVCRRLVELLMHPSPSVQTPALRTVGNIVTG 322
                 333333355556666666666666655333222111223456666666666666666666666666.555555531.2222233334448888888888887444456688888887773255788888888888*****************9999996666433346788*******************9999875 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00053
  PF01602.15 228 kellesllnllqssnnaVlletvklivelapkne.......livlavnaLvrllsskdenlryvaLrnlnkileke 296
                 +++++ l nll+s+   +  e++ +i +  +  +       + ++++ +L++lls  d  +  vaL++l  il+  
   MMETSP0890-20130614|972_1 375 ANIIPPLINLLNSAEFDIRKEAAWAISNATSGGTpqqikflVSQACIPPLCELLSVADVKIIVVALEALENILKIG 450
                 679999999999999999999999999544443345677988899**********999999999998877776653 PP

>> PF11698.3  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.3   7.8e+03      80     113 ..      74     107 ..      66     109 .. 0.66
   2 ?    4.3   0.0     0.026        33      44     113 ..     124     193 ..     120     197 .. 0.89
   3 !   10.0   0.0   0.00043      0.53      47     115 ..     254     321 ..     249     323 .. 0.89
   4 ?    0.9   0.0      0.29   3.6e+02      60     110 ..     350     400 ..     326     405 .. 0.68
   5 ?    0.2   0.1      0.49     6e+02      79     108 ..     464     493 ..     417     500 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6.3
  PF11698.3  80 nileklkvkervmellshedeevrkeALlavqkl 113
                ++++kl+   +++  ++  d++v+ eA +   kl
  MMETSP0890-20130614|972_1  74 AVVQKLEQLPQLVAGVHAMDPKVQIEATTQFRKL 107
                4566666666666777777888887776666665 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.026
  PF11698.3  44 llkkLielleksedkttlavacnDigefvrlypegknileklkvkervmellshedeevrkeALlavqkl 113
                ++ kL++ l+k+e++     a+  +++++  + +  +++ + ++     +ll +++++vr++A+ a+ ++
  MMETSP0890-20130614|972_1 124 VVPKLVQFLSKDETPALQFEAAWALTNIASGTADHTRVVIQEGAVPIFCRLLLSPNDDVREQAVWALGNI 193
                6778999999999998888899999999999999999999999*********************999876 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00043
  PF11698.3  47 kLielleksedkttlavacnDigefvrlypegknileklkvkervmellshedeevrkeALlavqkllv 115
                +L++l+  s d+ +l+ ac  ++ + +  +++ + + + +v +r++ell h+ ++v++ AL++v ++++
  MMETSP0890-20130614|972_1 254 TLAQLI-YSPDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCRRLVELLMHPSPSVQTPALRTVGNIVT 321
                677777.45678889999999*99999999999*******************************99985 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.29
  PF11698.3  60 tlavacnDigefvrlypegknileklkvkervmellshedeevrkeALlav 110
                + + ac  i+++    +++ + + + ++   +++ll++++ ++rkeA  a+
  MMETSP0890-20130614|972_1 350 IRKEACWTISNITAGNKTQIQAVIDANIIPPLINLLNSAEFDIRKEAAWAI 400
                344477777777777777777777888888888888888888888887776 PP

  == domain 5    score: 0.2 bits;  conditional E-value: 0.49
  PF11698.3  79 knileklkvkervmellshedeevrkeALl 108
                 + + + +  +++ +l +h+++++ ++A++
  MMETSP0890-20130614|972_1 464 ATHIAEADGLKKIEDLQQHDNHDIYEKAVR 493
                334455666677888888888888888876 PP

>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.25   3.1e+02      86     156 ..     133     203 ..      77     230 .. 0.76
   2 !   17.4   0.0   7.5e-07   0.00093      82     171 ..     297     387 ..     286     400 .. 0.89
   3 ?   -3.8   0.0         2   2.5e+03      55     367 ..     436     449 ..     410     470 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.25
  PF10508.4  86 lkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklskseagldev 156
                +k +tpa++  ++  l +i + +   + ++ +e+ +    ++l +++ +v e+a  +L +++   ++++++
  MMETSP0890-20130614|972_1 133 SKDETPALQFEAAWALTNIASGTADHTRVVIQEGAVPIFCRLLLSPNDDVREQAVWALGNIAGDSPNCRDL 203
                45566777777777777777777777777777777777777777777777777777777777777777766 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 7.5e-07
  PF10508.4  82 lqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklsk.seagldevfdsnlkskLkellkq 171
                l e l h++p+v+  +l+++++iv   +++++++ +++ l  +l++l +++  + +ea  +++++   ++ ++++v d n +  L +ll++
  MMETSP0890-20130614|972_1 297 LVELLMHPSPSVQTPALRTVGNIVTGDDLQTQIIINFSALPCLLNLLGNPKKGIRKEACWTISNITAgNKTQIQAVIDANIIPPLINLLNS 387
                667899**********************************************************975267788999888887777766655 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2
  PF10508.4  55 vtlcveiLkrllktlalddlienlqevlqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklskseagldevfdsnlkskLkellkqlsdivRvRiyelavelasvSeealsactesgllkkllkeldgeDvLvqlsvlellteLAegnhGaeyLeqngvvdklselieeseedpklsalylpGlikffgklatmsppqvlktypeflerlfsmldsedptelptAldtlGllassvegkqlLmfktskalektlkaagaakkelsvelklraLqaltsifef 367
                + ++                                                                                                                                                                                                                                                                                                           L+al++i++ 
  MMETSP0890-20130614|972_1 436 IVVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEALENILKI 449
                2233...........................................................................................................................................................................................................................................................................................................3333333332 PP

>> PF08216.6  Eukaryotic domain of unknown function (DUF1716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.7   3.4e+03      65      88 ..      52      75 ..      23      83 .. 0.54
   2 ?   -1.5   0.0       1.3   1.7e+03      80     100 ..     116     136 ..      91     138 .. 0.67
   3 ?   -1.0   0.0      0.92   1.1e+03      76     106 ..     155     185 ..     144     187 .. 0.78
   4 ?    2.8   0.0     0.061        75      63     100 ..     267     305 ..     261     312 .. 0.81
   5 ?    1.5   0.0      0.15   1.9e+02      80     105 ..     369     394 ..     358     397 .. 0.83
   6 ?   -1.4   0.0       1.3   1.6e+03      76     103 ..     408     435 ..     405     440 .. 0.77
   7 !    5.7   0.0    0.0079       9.8      81     107 ..     465     491 ..     448     492 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.7
  PF08216.6 65 eeiqelkvlaevpdLykslvelna 88
               + + +++++ + p+   + ++  +
  MMETSP0890-20130614|972_1 52 RRTANINAMGQNPNQTSQQIDTAV 75
               333344444444444444444444 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.3
  PF08216.6  80 ykslvelnavsslleLLsHeN 100
                ++++++ ++v +l++ Ls + 
  MMETSP0890-20130614|972_1 116 IQMVIDAGVVPKLVQFLSKDE 136
                567789999999999998776 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.92
  PF08216.6  76 vpdLykslvelnavsslleLLsHeNtDiaia 106
                ++d  + +++ +av  +  LL  +N D+  +
  MMETSP0890-20130614|972_1 155 TADHTRVVIQEGAVPIFCRLLLSPNDDVREQ 185
                5566677899999**************9765 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.061
  PF08216.6  63 Ldeeiqelkvlaevp.dLykslvelnavsslleLLsHeN 100
                L ++  +l+ l+  p d ++ ++e ++ + l+eLL H+ 
  MMETSP0890-20130614|972_1 267 LTDACWALSYLSDGPnDKIQAVIEAGVCRRLVELLMHPS 305
                556666788888877357899****************85 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.15
  PF08216.6  80 ykslvelnavsslleLLsHeNtDiai 105
                ++ +++ n++  l++LL+    Di  
  MMETSP0890-20130614|972_1 369 IQAVIDANIIPPLINLLNSAEFDIRK 394
                678899************99999965 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 1.3
  PF08216.6  76 vpdLykslvelnavsslleLLsHeNtDi 103
                +p+ +k lv+  ++  l eLLs     i
  MMETSP0890-20130614|972_1 408 TPQQIKFLVSQACIPPLCELLSVADVKI 435
                57788999999*********98655444 PP

  == domain 7    score: 5.7 bits;  conditional E-value: 0.0079
  PF08216.6  81 kslvelnavsslleLLsHeNtDiaiav 107
                  + e ++++++ +L +H+N Di  ++
  MMETSP0890-20130614|972_1 465 THIAEADGLKKIEDLQQHDNHDIYEKA 491
                4578999****************7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:01.00
# Mc/sec: 1296.43
//
Query:       MMETSP0890-20130614|984_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-16   59.3   0.1    3.7e-16   58.5   0.1    1.4  1  PF08373.5 RAP domain
  ------ inclusion threshold ------
      0.034   12.7   0.0      0.036   12.6   0.0    1.0  1  PF09710.5 Treponema clustered lipoprotein (Trep_dent_lipo)


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   5.3e-20   3.7e-16       1      45 [.      68     115 ..      68     117 .] 0.87

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 5.3e-20
  PF08373.5   1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnel 45 
                ie+dGp+h+++   +++   g tk+K r+ ++lGw vi++pyfeWn l
  MMETSP0890-20130614|984_1  68 IEVDGPYHYIKCKgKEPVenGRTKFKSRLFRQLGWSVIHVPYFEWNAL 115
                9********66664444466**************************98 PP

>> PF09710.5  Treponema clustered lipoprotein (Trep_dent_lipo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.3e-06     0.036      85     135 ..      44      91 ..      12     103 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.3e-06
  PF09710.5  85 dkvliqayktrtkigiDnlaqqknlevikvekdkefiyCkqkataknGkel 135
                d+++  ++ t + ++iD +aq kn+  i+v+   ++i+Ck k +++nG++ 
  MMETSP0890-20130614|984_1  44 DHIF--EFVTEEGLSID-MAQPKNMIAIEVDGPYHYIKCKGKEPVENGRTK 91 
                4444..88899999999.58999*************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 438.08
//
Query:       MMETSP0890-20130614|990_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-18   65.0   0.8    2.8e-15   55.5   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
    4.5e-18   64.8   0.0    4.8e-18   64.7   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    6.5e-09   35.1   0.1      7e-09   35.0   0.1    1.0  1  PF13414.1  TPR repeat
    7.2e-08   31.5   1.2    1.2e-07   30.9   0.2    1.7  2  PF00515.23 Tetratricopeptide repeat
    7.8e-08   31.4   0.1    6.4e-07   28.5   0.0    1.9  2  PF13176.1  Tetratricopeptide repeat
    9.1e-07   28.2   0.8    1.4e-06   27.6   0.2    1.5  2  PF07719.12 Tetratricopeptide repeat
      3e-05   23.7   1.3     0.0099   15.9   0.0    2.8  2  PF13431.1  Tetratricopeptide repeat
    0.00019   20.8   0.3    0.00031   20.1   0.2    1.3  1  PF13181.1  Tetratricopeptide repeat
    0.00051   20.5   0.0    0.00053   20.4   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
    0.00068   19.9   0.0    0.00089   19.5   0.0    1.3  1  PF13428.1  Tetratricopeptide repeat
     0.0041   16.8   0.0     0.0048   16.6   0.0    1.1  1  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.032   14.3   0.1      0.042   13.9   0.0    1.3  1  PF07554.8  Uncharacterised Sugar-binding Domain
      0.044   14.1   0.0      0.078   13.3   0.0    1.3  1  PF13174.1  Tetratricopeptide repeat
      0.062   12.9   0.0      0.075   12.6   0.0    1.1  1  PF10975.3  Protein of unknown function (DUF2802)
       0.12   11.2   0.0       0.12   11.2   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.1e-18   2.8e-15       1      42 []       4      45 ..       4      45 .. 0.98
   2 !    8.5   0.1    0.0018       1.7       1      15 [.      46      60 .]      46      60 .] 0.90

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.1e-18
  PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
               +a +lnnLA +l ++g+y+eA +l+e+a +i ++ lG++HP+
  MMETSP0890-20130614|990_1  4 VAQSLNNLAGLLEEQGKYDEAKPLYERAIEIVEKTLGPNHPN 45
               799**************************************5 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0018
  PF13374.1  1 taaalnnLAlalrar 15
               +a+ lnnLA +lr++
  MMETSP0890-20130614|990_1 46 VATGLNNLAGLLRDQ 60
               6889********997 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   5.3e-21   4.8e-18       1      58 [.       1      59 [.       1      60 [] 0.97

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 5.3e-21
  PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlyla 58
               hpd+a++lnnla++l+++g+ydeA  lye+a+e+  ++lg++hp++a+ lnnla l++ 
  MMETSP0890-20130614|990_1  1 HPDVAQSLNNLAGLLEEQGKYDEAKPLYERAIEIvEKTLGPNHPNVATGLNNLAGLLRD 59
               9*****************************************************99876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   7.7e-12     7e-09       2      47 ..       4      57 ..       3      60 .] 0.83

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 7.7e-12
  PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlay 47
               +A++l++l+  l ++g+ydeA  +ye+A+e+      pn+++    ++nlA ++
  MMETSP0890-20130614|990_1  4 VAQSLNNLAGLLEEQGKYDEAKPLYERAIEIVektlgPNHPNvatGLNNLAGLL 57
               79****************************844455577777666999999655 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   1.3e-10   1.2e-07       1      30 [.       5      34 ..       5      37 .. 0.95
   2 ?   -0.6   0.0       1.2   1.1e+03       2      12 ..      48      58 ..      47      60 .] 0.71

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.3e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a++l+nl+ ++ ++gkydeA   ye+A+e+
   MMETSP0890-20130614|990_1  5 AQSLNNLAGLLEEQGKYDEAKPLYERAIEI 34
                789**************************8 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.2
                HHHHHHHHHHH CS
  PF00515.23  2 kalynlGnayl 12
                  l+nl+ +++
   MMETSP0890-20130614|990_1 48 TGLNNLAGLLR 58
                57999997665 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     7e-10   6.4e-07       1      32 [.       7      38 ..       7      44 .. 0.87
   2 ?    1.1   0.0      0.44     4e+02       2      12 ..      50      60 .]      49      60 .] 0.86

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 7e-10
  PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdp 32
               +l+nLa l +++g+y++A  lyera+++ +  
  MMETSP0890-20130614|990_1  7 SLNNLAGLLEEQGKYDEAKPLYERAIEIVEKT 38
               79**********************88776555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.44
  PF13176.1  2 llnLarlysrl 12
               l+nLa l +++
  MMETSP0890-20130614|990_1 50 LNNLAGLLRDQ 60
               89***999875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.2   1.6e-09   1.4e-06       1      30 [.       5      34 ..       5      37 .. 0.93
   2 ?   -1.6   0.0       3.4   3.1e+03       2      12 ..      48      58 ..      47      60 .] 0.68

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.6e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+ l+nl+ +++++g+y+eA+ ++e+A+e+
   MMETSP0890-20130614|990_1  5 AQSLNNLAGLLEEQGKYDEAKPLYERAIEI 34
                5789************************98 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 3.4
                HHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayy 12
                 +l+nl+ +++
   MMETSP0890-20130614|990_1 48 TGLNNLAGLLR 58
                57888887665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05    0.0099       9      33 ..       1      25 [.       1      26 [. 0.94
   2 ?    5.8   0.2     0.018        16       1      20 [.      27      54 ..      27      60 .] 0.58

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-05
  PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
               +P+ a+++nnLA ll ++G+++eA+
  MMETSP0890-20130614|990_1  1 HPDVAQSLNNLAGLLEEQGKYDEAK 25
               6999*******************97 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.018
  PF13431.1  1 lyekalel........dPnnadaynnLA 20
               lye+a+e+        +Pn a  +nnLA
  MMETSP0890-20130614|990_1 27 LYERAIEIvektlgpnHPNVATGLNNLA 54
               6899999865444332344466666666 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   3.4e-07   0.00031       2      30 ..       6      34 ..       5      37 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.4e-07
               --TTT---HHHHTT-HHHHHHHHH---HH CS
  PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
               ++++nl+ ++++ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|990_1  6 QSLNNLAGLLEEQGKYDEAKPLYERAIEI 34
               7899***********************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.8e-07   0.00053      28      64 ..       2      43 ..       1      60 [] 0.65

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 5.8e-07
  PF13432.1 28 PeaaeallllaeallrlgrldeAaallraal.....alaPdd 64
               P+ a+ l +la +l ++g++deA  l+++a+      l+P++
  MMETSP0890-20130614|990_1  2 PDVAQSLNNLAGLLEEQGKYDEAKPLYERAIeivekTLGPNH 43
               566666666777777777777777666666645544444444 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.8e-07   0.00089       4      38 ..       8      47 ..       5      58 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 9.8e-07
  PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaeal 38
               l  la +l+++G +deA  l++ra++     l+P+++ + 
  MMETSP0890-20130614|990_1  8 LNNLAGLLEEQGKYDEAKPLYERAIEivektLGPNHPNVA 47
               5679********************9977777566665544 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06    0.0048      15      38 ..      15      38 ..       5      44 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.3e-06
                HHHTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlelLlqa 38
                 +e+gky+eA  lY+ A+e+ ++ 
   MMETSP0890-20130614|990_1 15 LEEQGKYDEAKPLYERAIEIVEKT 38
                69*****************98775 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.6e-05     0.042      10      46 ..      18      47 ..       6      48 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.6e-05
               CHHHHTC-HHHHHHHHHHHHHHHHHH...TSTTTTCC CS
  PF07554.8 10 ssnysnadtekknaynnAitaAkaiLnntngpnatqe 46
                 +y    +e+k +y+ Ai++++++L ++    ++++
  MMETSP0890-20130614|990_1 18 QGKY----DEAKPLYERAIEIVEKTLGPNH---PNVA 47
               4556....999***************8866...6654 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.6e-05     0.078       6      28 ..      11      33 ..      10      34 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.6e-05
               HHHHHHHHHHHHHHHHHHHHHHH CS
  PF13174.1  6 lalsyyklgdtdeAlealerlik 28
               la +++++g++deA+ ++er i+
  MMETSP0890-20130614|990_1 11 LAGLLEEQGKYDEAKPLYERAIE 33
               566778888***********997 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.2e-05     0.075      10      43 ..       4      37 ..       2      42 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.2e-05
  PF10975.3 10 leqklkqleerleeleqqdpesrlYsrAaklvel 43
               ++q+l++l+  lee  + d++++lY+rA+++ve+
  MMETSP0890-20130614|990_1  4 VAQSLNNLAGLLEEQGKYDEAKPLYERAIEIVEK 37
               7899999999**********************96 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.12      41      79 ..       6      44 ..       1      56 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
  PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfilervfhpsFs 79
                +L +l+ +++eqg++ +A  l era+ i+e+ + p+  
  MMETSP0890-20130614|990_1  6 QSLNNLAGLLEEQGKYDEAKPLYERAIEIVEKTLGPNHP 44
               6899****************************9999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 202.51
//
Query:       MMETSP0890-20130614|989_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.13   11.9   0.0    1.2  1  PF09019.6 EcoRII C terminal


Domain annotation for each model (and alignments):
>> PF09019.6  EcoRII C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.4e-06      0.13      56     146 ..      55     144 ..      21     160 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.4e-06
                --BSS---------S-EES-----S-SSS-GGG-EEEEEESS-TT-SGGGCTS-SS-SS-EEEE------HHHHHHHHH---EEE--HHHH CS
  PF09019.6  56 efetqaktenkkkpDflfPgvaeYedpafpkeklrllaaKttlkdRwrqvleEadrikekhLlTLeegiseeqlnelkeanvqlvvpkelk 146
                + e+ +kt ++++p  + Pg+++Y ++  +k+++r l a + ++d ++++++ a+  +    + L +++ + +ln l++ + +lv  +  +
  MMETSP0890-20130614|989_1  55 TKEEFCKTSDEENPNGIAPGCEDYVKDPEKKARMR-LRALAEVRDSYQELADTAAVTNARDGALLRQSLRSGKLNSLRKDGKRLVALSLNN 144
                3344569*****************95544444444.778899**************9999999**************99998887544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 670.98
//
Query:       MMETSP0890-20130614|987_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0052   16.0   4.7     0.0052   16.0   3.3    2.7  3  PF03357.16 Snf7
  ------ inclusion threshold ------
      0.034   14.3   2.4       0.11   12.6   0.8    2.2  2  PF00435.16 Spectrin repeat
       0.68    9.8   5.1        4.9    7.0   0.2    3.3  3  PF06133.6  Protein of unknown function (DUF964)
       0.72    9.0   6.5        3.5    6.8   1.1    2.3  2  PF10368.4  Putative cell-wall binding lipoprotein
        1.4    8.8   5.5        8.8    6.2   0.5    3.1  3  PF07511.6  Protein of unknown function (DUF1525)
        1.8    7.9   4.8        9.4    5.6   0.5    2.8  3  PF01628.16 HrcA protein C terminal domain
        3.1    8.0  11.1          2    8.6   4.2    2.8  2  PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
        3.5    8.1   9.1       0.73   10.3   1.3    2.8  3  PF09392.5  Type III secretion needle MxiH like


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.049        84      90     147 ..      40     100 ..      29     109 .. 0.72
   2 !   16.0   3.3   3.1e-06    0.0052      65     151 ..     123     203 ..     102     216 .. 0.86
   3 ?   -1.1   0.1      0.55   9.4e+02      75      97 ..     224     246 ..     219     251 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.049
  PF03357.16  90 gakamkamnkkmdidkidklmdeiedqmekade..isealsrsldda.deedEeeldaeLd 147
                 g+++  +   + d  k++k+ ++++   ++++     + l++++++     d  e+da+L+
   MMETSP0890-20130614|987_1  40 GNEEVIEEEPTTDFAKLHKMVEDMQSGKAVNKNadAADLLDQAFGMWeGVLDSPEVDALLS 100
                 5666666667788899999999999776665551145678888877766666666666664 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 3.1e-06
  PF03357.16  65 anleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrslddadeedEeeldaeLdaLeq 151
                  ++e ++++ +  k+  ++ + m++g +a+ka++k +      ++  +++d +e+ + ++e++++++++   +++eel +  ++L+ 
   MMETSP0890-20130614|987_1 123 EQVE-ALMQSDAFKDPEQFKQRMREGMSAFKAVSKDVA----SEIGSQFQDLLENPEKLQETMAQAMQS-LGVSQEELAKASENLLN 203
                 5554.468889999***********************9....99***********************99.89999999887777765 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.55
  PF03357.16  75 enaksnkevlnamkqgakamkam 97 
                 e+ ++n e+ ++m+q+   +++ 
   MMETSP0890-20130614|987_1 224 EEIMNNPEFKQQMEQAQAYLNSL 246
                 44555555555555555555554 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.8   6.4e-05      0.11      20      95 ..     124     204 ..     121     208 .. 0.88
   2 ?   -0.7   0.0      0.88   1.5e+03      23      40 ..     226     243 ..     219     250 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-05
                 HHHHHHCCCHSSSHHHHHHHHH....HHHHHHHHHHH.HHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH CS
  PF00435.16  20 keellssedlgkdleevqallk....khkaleaelaa.qqervealnelaeklideghsaseeieerleelnerWeeLlel 95 
                 + e l++ d  kd+e+ ++ ++    ++ka+ +++a+    ++++l e  ekl++   +a++++  ++eel ++ e+Ll  
   MMETSP0890-20130614|987_1 124 QVEALMQSDAFKDPEQFKQRMRegmsAFKAVSKDVASeIGSQFQDLLENPEKLQETMAQAMQSLGVSQEELAKASENLLNS 204
                 44455555555**********99999***********99**************9999*****************9999875 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.88
                 HHHCCCHSSSHHHHHHHH CS
  PF00435.16  23 llssedlgkdleevqall 40 
                 ++++ ++ +++e++qa l
   MMETSP0890-20130614|987_1 226 IMNNPEFKQQMEQAQAYL 243
                 555555555555555443 PP

>> PF06133.6  Protein of unknown function (DUF964)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0029       4.9       2      71 ..      78     148 ..      77     187 .. 0.84
   2 ?   -1.2   2.5       1.1   1.8e+03      33      52 ..     164     183 ..     126     204 .. 0.49
   3 ?    2.4   0.1     0.079   1.3e+02      73      95 ..     225     248 ..     222     272 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0029
                HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-HHH.HHHHHHHHHHH CS
  PF06133.6   2 iydkaneLakaireseeykalkeaeaaikadeeakklieefkklqeeiqekqqqgkeea.keeeqklqelk 71 
                ++d+a  + + + +s+e++al   e a++     + li+++    e+++ ++q++  ++ ++ +q+++e  
  MMETSP0890-20130614|987_1  78 LLDQAFGMWEGVLDSPEVDALLSDESALRTAMLENPLIKSIPGASEQVEALMQSDAFKDpEQFKQRMREGM 148
                78999999999999***************9999999**************999999999899999998754 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHHHHHHHH CS
  PF06133.6  33 eeakklieefkklqeeiqek 52 
                ++ ++l+e+ +klqe + ++
  MMETSP0890-20130614|987_1 164 SQFQDLLENPEKLQETMAQA 183
                23334444444444444333 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.079
                HHHTSHHHHHHH.HHHHHHHHHHH CS
  PF06133.6  73 eidknekvaefk.eaeqalqdllq 95 
                ei++n++ ++ + +a+  l++l+q
  MMETSP0890-20130614|987_1 225 EIMNNPEFKQQMeQAQAYLNSLMQ 248
                555555554433134444555554 PP

>> PF10368.4  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.011        19      78     121 ..      33      76 ..      27      92 .. 0.73
   2 ?    6.8   1.1     0.002       3.5      36     105 ..     135     201 ..     116     206 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.011
  PF10368.4  78 ekRekllkkEkesiekseeefksakktiekiedkk.lkkkakelk 121
                 +R+    +E+ + e+  ++f +++k++e+++  k + k+a++ +
  MMETSP0890-20130614|987_1  33 TRRKSSSGNEEVIEEEPTTDFAKLHKMVEDMQSGKaVNKNADA-A 76 
                355666677777778899************9975505555554.3 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.002
  PF10368.4  36 eeqkkleelEkkeqelyeqiielnkddneeikklseeavenvekRekllkkEkesiekseeefksakkti 105
                ++ ++ ++  +++   ++++    kd  +ei ++ ++++en ek ++ +++  +s+  s+ee+ +a +++
  MMETSP0890-20130614|987_1 135 KDPEQFKQRMREGMSAFKAV---SKDVASEIGSQFQDLLENPEKLQETMAQAMQSLGVSQEELAKASENL 201
                44455555555666667777...788889999999****************************9998865 PP

>> PF07511.6  Protein of unknown function (DUF1525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   4.6e+02      32      69 ..     111     150 ..     101     163 .. 0.52
   2 ?    6.2   0.5    0.0051       8.8      36      80 ..     166     208 ..     157     210 .. 0.89
   3 ?    2.5   0.0     0.071   1.2e+02      50      77 ..     223     250 ..     214     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.27
  PF07511.6  32 eeelsaeLpadpqqaeaqarqr.lqspe.wkrlqeqlkka 69 
                e+ l +++p  ++q ea++++  +++pe +k+++++  +a
  MMETSP0890-20130614|987_1 111 ENPLIKSIPGASEQVEALMQSDaFKDPEqFKQRMREGMSA 150
                5555555665555555544432244443133333333333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0051
  PF07511.6  36 saeLpadpqqaeaqarqrlqspewkrlqeqlkkayqglakawqlg 80 
                +++L ++p++ ++++ q +qs+    +qe+l+ka+++l++ +++g
  MMETSP0890-20130614|987_1 166 FQDLLENPEKLQETMAQAMQSLG--VSQEELAKASENLLNSASIG 208
                789999****************9..88999******999988876 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.071
  PF07511.6  50 arqrlqspewkrlqeqlkkayqglakaw 77 
                +++ +++pe+k+++eq ++  + l+++ 
  MMETSP0890-20130614|987_1 223 MEEIMNNPEFKQQMEQAQAYLNSLMQGS 250
                778899*********9999999988875 PP

>> PF01628.16  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.31   5.4e+02     124     166 ..      29      71 ..       9      84 .. 0.72
   2 ?    4.1   0.3     0.016        27      88     131 ..     151     194 ..     124     208 .. 0.79
   3 ?    5.6   0.5    0.0055       9.4      93     161 ..     181     249 ..     173     280 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.31
  PF01628.16 124 eeaeeeelyvaGtsnllrqpefsdlerlrellelLeeqekllk 166
                 ++a  ++   +G  ++++++   d ++l +++e +++ + + k
   MMETSP0890-20130614|987_1  29 QNAWTRRKSSSGNEEVIEEEPTTDFAKLHKMVEDMQSGKAVNK 71 
                 4444477778999999999988999999999999988777665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.016
  PF01628.16  88 lselreklraelkeeleeyaellrellellaaalsteeaeeeel 131
                 ++ +++++++e+ ++++++ e+ ++l e++a+a+++   ++eel
   MMETSP0890-20130614|987_1 151 FKAVSKDVASEIGSQFQDLLENPEKLQETMAQAMQSLGVSQEEL 194
                 67788999999999999999999999999999988777655554 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0055
  PF01628.16  93 eklraelkeeleeyaellrellellaaalsteeaeeeelyvaGtsnllrqpef.sdlerlrellelLeeq 161
                 +++ + l  ++ee+a++ ++ll++ +    +++  +    + G+ +++++pef +++e++++ l+ L + 
   MMETSP0890-20130614|987_1 181 AQAMQSLGVSQEELAKASENLLNSASIGG-EATGGNPLQGIPGMEEIMNNPEFkQQMEQAQAYLNSLMQG 249
                 33334455555555555555555544442.222223444589***********66799999999888655 PP

>> PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   3.3       1.1   1.9e+03      50      79 ..     165     192 ..      86     220 .. 0.63
   2 ?    8.6   4.2    0.0012         2      10      66 ..     164     247 ..     156     265 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.1
  PF13658.1  50 qFkqalasltqalrdgglpsilsalglkve 79 
                qF++ l++ +++++   + + +++lg+++e
  MMETSP0890-20130614|987_1 165 QFQDLLENPEKLQE--TMAQAMQSLGVSQE 192
                33333333333332..33333444444444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0012
  PF13658.1  10 ealepllesadevqerLlsfLPeedl......erapea......................lrevlrsPqFkqalasltqalrdgg 66 
                +++++lle++++ qe++ + + +         ++a+e+                      ++e++++P+Fkq++++ +  l++  
  MMETSP0890-20130614|987_1 164 SQFQDLLENPEKLQETMAQAMQSL-GvsqeelAKASENllnsasiggeatggnplqgipgMEEIMNNPEFKQQMEQAQAYLNSLM 247
                577888888866666665555433.12443443333338888889999999999999999****************999888654 PP

>> PF09392.5  Type III secretion needle MxiH like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.9   3.3e+03      52      52 ..      92      92 ..      55     133 .. 0.51
   2 ?   10.3   1.3   0.00042      0.73       2      64 ..     138     202 ..     137     213 .. 0.91
   3 ?    1.4   0.0      0.26   4.4e+02       5      80 ..     233     255 ..     229     260 .. 0.54

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.9
               X CS
  PF09392.5 52 d 52
               +
  MMETSP0890-20130614|987_1 92 S 92
               0 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00042
                XXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXX...........XXX..XXXXXXX-S-- CS
  PF09392.5   2 drFvqamkvaqahsaagagntyaeisaaldaakaaarasasevtstasvsdp..erllelQmelv 64 
                ++F+q m++  ++ +a ++ +++ei +  +++ ++++++++ +++++++ +   e+l++++ +l+
  MMETSP0890-20130614|987_1 138 EQFKQRMREGMSAFKAVSKDVASEIGSQFQDLLENPEKLQETMAQAMQSLGVsqEELAKASENLL 202
                68***********************************************9998889998887765 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.26
                XXXXXXXXXXX.......XXXXXXXXXXXXXXXXX...........XXXXXXXXXX-S--TTGGGTT--HHHHHHH CS
  PF09392.5   5 vqamkvaqahsaagagntyaeisaaldaakaaarasasevtstasvsdperllelQmelvkysllmdltSklvgks 80 
                +q                                                     Qme  +++l+   ++ + g+s
  MMETSP0890-20130614|987_1 233 KQ-----------------------------------------------------QMEQAQAYLNSLMQGSASGAS 255
                45.....................................................555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       817  (0.0597572); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:01.17
# Mc/sec: 583.73
//
Query:       MMETSP0890-20130614|994_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-26   93.1   0.1    2.8e-26   92.7   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
      7e-19   67.8   0.0    1.4e-18   66.9   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
    4.5e-14   52.4   0.0    1.3e-13   50.9   0.0    1.7  1  PF00561.15 alpha/beta hydrolase fold
    5.8e-08   32.4   0.0    1.1e-07   31.5   0.0    1.4  1  PF08386.5  TAP-like protein
  ------ inclusion threshold ------
      0.044   12.8   0.0       0.13   11.3   0.0    1.7  2  PF00326.16 Prolyl oligopeptidase family
       0.12   12.1   0.0       0.25   11.0   0.0    1.5  1  PF12146.3  Putative lysophospholipase
       0.15   11.1   1.0       0.78    8.8   0.7    2.0  1  PF05057.9  Putative serine esterase (DUF676)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   1.4e-29   2.8e-26       1     226 [.     115     355 ..     115     357 .. 0.75

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 1.4e-29
                EEE------------HHHHHHT..TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--..--EEEE--------HHHHHH----.EEEEEEE------STT...............---TTHHHHHHHHHH----....--H..HHHHH...-----HHHHHH--GGGG....GG...------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHS.TTEEEEE---SSSS-...-HHHHH CS
  PF12697.2   1 vvllHGlggsaeswrplaeaLa..agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl.rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...............alrpagpsllrrllagraaalrdlaarafarlf...dgdelealvradaaalaellraa...lldadlrealarldvPvlviageaDrvvppeearrlaeal.pgarvvvlpgagHllfleapdeva 226
                vvl+HG+ g+ ++ rpla++++      ++++Dl G+G+S+      p+ +  +++ l +ll  l++ ++++lvG SlGg v++++a+  p+ v+ + l++p+g + +                       +l+++++ag +  +   ++  +a l    d+  +e       ++l+ ++r+    +l++++ + l++ ++P l+i+g++D ++p ++a  +a++l p+a++ ++ ga H+++ e    va
  MMETSP0890-20130614|994_1 115 VVLVHGFSGDMGHTRPLANLIHenTKASILIYDLVGRGFSSCRG--RPHECSLFVSQLTELLLVLNIkTKIHLVGISLGGGVITEFARIFPHSVATISLVAPAGLRLSTglhavtkipilpdilFRC----ALWSTVVAGLEHEWSEHSSQLLAMLSsykDRVKFEPA---LGRSLLSTCRHFpfeNLEHSF-QMLGKNKIPLLLIWGDQDGTCPIDAAYDIANRLvPHAQLFIINGARHCVYSEFSTTVA 355
                8********************75669***************965..5999***************9977***********************************77666777777666554443222....3444444433333322222222211110023333333...334555555554776676776.999999****************8899889888549**************988777776 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   7.2e-22   1.4e-18       2     142 .]     115     345 ..     114     345 .. 0.72

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 7.2e-22
  PF12695.2   2 vvlvhGaggdssayeplaealakr.gfavvavdlpghgas..egaa........aakrvlaadll...dleriilvGhSlGGgvalelag.................................................................rddrvkglvllapfpdgedlakltl......................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                vvlvhG+ gd  + +pla+ ++++ + +++++dl g+g s   g++        +++++l    l      +i+lvG SlGGgv++e+a+                                                                 +                                                              p+lli+G++Dg +p ++a ++a++l ++a+l++i ga H+
  MMETSP0890-20130614|994_1 115 VVLVHGFSGDMGHTRPLANLIHENtKASILIYDLVGRGFSscRGRPhecslfvsQLTELL----LvlnIKTKIHLVGISLGGGVITEFARifphsvatislvapaglrlstglhavtkipilpdilfrcalwstvvaglehewsehssqllamlsS-----------------------YkdrvkfepalgrsllstcrhfpfenlehsfqmlgknkiPLLLIWGDQDGTCPIDAAYDIANRLVPHAQLFIINGARHC 345
                9***********************9**************976555577777666666655....1344335*******************777777777777777777777777777777777777666666666666666666555555554441.......................033333333333444444444444444444444444444***************************************6 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   6.5e-17   1.3e-13       3     227 ..     143     357 ..     141     360 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 6.5e-17
                 EEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCHCHHHHHHHHCCHHHH..H...HHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHH.HHHCSTTEEEEEETTHHCSHHHHSCHHHHHH CS
  PF00561.15   3 viglDlrGvgySspaggpelphyttddlardleavldalglkk.ltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvlnrgstltlladnvagr..l...skgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwdvtetlktilvptlvisgtdDplvpykasek.laelipksqlvvidgpgHlafldkpdeinkl 227
                 ++++Dl G g+Ss    +  + +    ++ +l  +l  l++k  ++lvG S+GG   +++a  +p++v+ + l++++     +  s  l++  + + l d  +++  +   + g ++ ++++s q   ll   ++  ++++ + +++r     +++ +++     +l+ + ++ l + ++p+l+i+g++D++ p +a+++    l+p++ql+ i+g+ H+++ +    ++++
   MMETSP0890-20130614|994_1 143 ILIYDLVGRGFSS----CRGRPHECSLFVSQLTELLLVLNIKTkIHLVGISLGGGVITEFARIFPHSVATISLVAPA----GLRLSTGLHAVTKIPILPDILFRCalWstvVAGLEHEWSEHSSQ---LLAMLSSYKDRVKFEPALGR--SLLSTCRHFP---FENLEHS-FQMLGKNKIPLLLIWGDQDGTCPIDAAYDiANRLVPHAQLFIINGARHCVYSEFSTTVAQD 357
                 6788888888888....667777777789999999999**************************************8....66666666664555555555555422211166666666666644...44444557777777888888..7788999999...8888888.999**************************88999****************98766666655 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.9e-11   1.1e-07       4      96 ..     273     367 ..     269     372 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 5.9e-11
  PF08386.5   4 fgaylaealls.CagwpvspqrprdelkakgappvLlvqnelDPatpyegakklaralgg.avlvtvegeGHgalaagnkCvdkavdaYLltGel 96 
                f+ +l ++lls C++ p++  +  +++  k+++p+Ll+ ++ D ++p   a  +a++l   a+l + +g+ H+++ + ++ v + + ++Ll+ ++
  MMETSP0890-20130614|994_1 273 FEPALGRSLLStCRHFPFENLEHSFQMLGKNKIPLLLIWGDQDGTCPIDAAYDIANRLVPhAQLFIINGARHCVYSEFSTTVAQDIVTFLLEQNV 367
                556667777888*****************9***************************98879****************************98665 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.97   1.9e+03     136     164 ..      89     121 ..      79     122 .. 0.70
   2 ?   11.3   0.0   6.8e-05      0.13     143     208 ..     303     364 ..     285     367 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.97
                 -GGG---....----EEEEEETT-SSS-THHHH CS
  PF00326.16 136 spadnvk....aypplllihGeeDdrvppaeal 164
                 ++ +++       +++ +i G++D+ v++ +++
   MMETSP0890-20130614|994_1  89 KNEQKIVslptCATHYEFIEGDLDQIVVLVHGF 121
                 444444455667777888999***999998875 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.8e-05
                 ----EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---------HHHHHHHHHHHHHHHH CS
  PF00326.16 143 aypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegHgigkprakveelarllaFllk 208
                 ++ pllli G++D  +p+  a+ ++++L     +++l i  +++H ++ ++++    ++++ Fll+
   MMETSP0890-20130614|994_1 303 NKIPLLLIWGDQDGTCPIDAAYDIANRLVP---HAQLFIINGARHCVY-SEFSTTVAQDIVTFLLE 364
                 789*************************86...589999******555.88888999999999987 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.25      16      74 ..     112     170 ..     101     174 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
  PF12146.3  16 kaavvlvhglaEhsgrYqelaedLaa.qGyavyayDhrGhGksegerghvpsfddyvdDl 74 
                +++vvlvhg+   +g    la+ + +    ++++yD  G G s   rg+ ++ + +v  l
  MMETSP0890-20130614|994_1 112 DQIVVLVHGFSGDMGHTRPLANLIHEnTKASILIYDLVGRGFSSC-RGRPHECSLFVSQL 170
                679*************9999999988357899**********974.77777777666655 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.7    0.0004      0.78       5      93 ..     112     195 ..     109     214 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0004
  PF05057.9   5 dhLvVlvHGlqgnsaDlelikeqlekikkelpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGglia 93 
                d +vVlvHG+ g   + + +++ +++   +++   i +    +    +  g        ++ + e +   + k +ki +vg SlGg ++
  MMETSP0890-20130614|994_1 112 DQIVVLVHGFSGDMGHTRPLANLIHE---NTKA-SILIYDLVGRGFSSCRGRPHECSLFVSQLTELLLVLNIK-TKIHLVGISLGGGVI 195
                689***********9*9999999999...3333.333333344444444444444455555666666666666.588888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.67
# Mc/sec: 1545.11
//
Query:       MMETSP0890-20130614|993_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-14   52.7   0.0    7.1e-14   52.2   0.0    1.2  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    1.3e-05   24.9   0.2    0.00017   21.4   0.2    2.6  3  PF13450.1  NAD(P)-binding Rossmann-like domain
    1.6e-05   25.0   1.3    0.00057   20.1   0.5    2.8  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    0.00064   19.0   0.1     0.0026   17.0   0.0    1.9  2  PF02558.11 Ketopantoate reductase PanE/ApbA
     0.0014   17.5   0.0        1.1    8.0   0.0    2.8  3  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0015   17.5   0.3     0.0024   16.8   0.2    1.3  1  PF01494.14 FAD binding domain
     0.0024   16.9   0.1     0.0056   15.7   0.0    1.5  2  PF01946.12 Thi4 family
     0.0077   15.0   0.0      0.018   13.8   0.0    1.6  1  PF01266.19 FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.029   13.4   0.1      0.097   11.7   0.0    1.8  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.033   13.9   0.0      0.066   12.9   0.0    1.7  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
      0.087   12.4   0.2       0.21   11.1   0.0    1.8  2  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
       0.17   11.1   2.4       0.39    9.9   0.4    2.3  3  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain


Domain annotation for each model (and alignments):
>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   6.2e-17   7.1e-14       2     188 ..      23     243 ..      22     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 6.2e-17
  PF13738.1   2 VvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrlhqpsffssdfgvn.dleklsldsspkwrikaelasgeeisa....yledvarrl.glkvrlstrvtevere..................gdrfevrvtdg....revr.akalvlatgavskpktlglpg.........sadk.eavhle..evlepedlkgkrvvVvGgghsAidallnLld 188
                +vG+G++Gl + + l + g+  + i +r+ ++++++l + +fv l++ +  +    ++  ++++ ++  +  + ++++ +g + +     +l++ ++ +    v+++t+v+++ r+                  +++f++ + d     + ++ +++l++a+g++sk   l +           +a++   +h    +  + + ++gkr++V+G+g sAi+al++  +
  MMETSP0890-20130614|993_1  23 IVGSGPIGLYAGCVLAKIGYH-VTIWERG-EVAENVLSW-KFVELFSKTELN----LPsLVRSILEEAGHILPENDSYITGGKFRSdillPLAKWIESQpNCLVKTKTQVKSIGRGrllkaeglaalnqgairrNSKFRILLFDTikkeEFIEtCDVLIDASGTYSKETALRSGMggiccpgedQAESsGLIHRIilDPADTSLFQGKRIAVLGSGYSAITALRQFSK 243
                8********************.*******.********9.5****9977554....44455667777777788899999988876445554444444441445*****************99****9999999888899988555667544448**********99977766544779999987555533344322244555679******************98766 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   1.5e-07   0.00017       1      29 [.      23      51 ..      23      53 .. 0.96
   2 ?   -1.8   0.0       2.5   2.9e+03      15      26 ..     147     159 ..     138     161 .. 0.66
   3 ?   -0.7   0.0       1.2   1.3e+03       1      16 [.     227     242 ..     227     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-07
  PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrd 29
               IvG+G  Gl+a + Lak g++v+++e+++
  MMETSP0890-20130614|993_1 23 IVGSGPIGLYAGCVLAKIGYHVTIWERGE 51
               9*************************986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.5
  PF13450.1  15 Laka.gkdvlvle 26 
                ++++ ++++l+++
  MMETSP0890-20130614|993_1 147 IRRNsKFRILLFD 159
                3443499*****9 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.2
  PF13450.1   1 IvGaGlsGlvaAylLa 16 
                ++G+G s+++a ++ +
  MMETSP0890-20130614|993_1 227 VLGSGYSAITALRQFS 242
                79******99987766 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.5     5e-07   0.00057       1      32 [.      20      51 ..      20      57 .. 0.94
   2 ?    2.2   0.0      0.19   2.1e+02       1      12 [.     224     235 ..     224     244 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5e-07
                EEEEE---HHHHHHHHHHHHTTSEEEEEESSS CS
  PF00070.22  1 rvvvvGGGyiGlElAaalaklgkkVtvierrd 32
                +v +vG+G iGl ++++lak+g +Vt+ er++
   MMETSP0890-20130614|993_1 20 HVGIVGSGPIGLYAGCVLAKIGYHVTIWERGE 51
                688*************************9975 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.19
                 EEEEE---HHHH CS
  PF00070.22   1 rvvvvGGGyiGl 12 
                 r++v+G+Gy+++
   MMETSP0890-20130614|993_1 224 RIAVLGSGYSAI 235
                 79********97 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0026       1      34 [.      21      54 ..      21      78 .. 0.85
   2 ?   -1.2   0.0      0.99   1.1e+03      17      84 ..     118     186 ..     116     189 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.3e-06
                EEEE-----------HHHHHHH-EEEE----HHH CS
  PF02558.11  1 iailGaGaiGsllaakLakagadvtlilrsrrle 34
                + i+G+G iG + ++ Lak g++vt++ r++ +e
   MMETSP0890-20130614|993_1 21 VGIVGSGPIGLYAGCVLAKIGYHVTIWERGEVAE 54
                57***************************99333 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.99
                 HHHHHH-EEEE----HHHH...HH----EEE-SS-EEE---SEEES-T.TT----SEEEE--SSS-S---- CS
  PF02558.11  17 Lakagadvtlilrsrrlea...lkknglrlksdkgeeivrppealseekqelepidllivtvKayqteeal 84 
                 L k++ +v  i+r+r l+a      n+  ++++++ +i+  ++  +ee   +e +d+li +  +y+ e al
   MMETSP0890-20130614|993_1 118 LVKTKTQVKSIGRGRLLKAeglAALNQGAIRRNSKFRILLFDTIKKEE--FIETCDVLIDASGTYSKETAL 186
                 556677777788877333312222233334444455566666555555..889999998776666666665 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.66   7.5e+02     309     338 ..     149     178 ..     121     181 .. 0.75
   2 !    8.0   0.0   0.00094       1.1     185     225 ..     217     260 ..     194     265 .. 0.74
   3 !    6.1   0.0    0.0035         4     297     340 ..     299     342 ..     286     343 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.66
  PF13434.1 309 gkgeveltlrneesgeeetleadavvlATG 338
                +++++++ l ++ ++ee+ +++d+++ A G
  MMETSP0890-20130614|993_1 149 RNSKFRILLFDTIKKEEFIETCDVLIDASG 178
                356899999999**************9998 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00094
  PF13434.1 185 eellkkkriavvGsGqSaaeifldllrr...qkaaelkwvtrsp 225
                ++l ++kriav GsG Sa   +++  +     k a l w++rs+
  MMETSP0890-20130614|993_1 217 TSLFQGKRIAVLGSGYSAITALRQFSKVpeqAKPAYLLWLVRSS 260
                457899************99988877764313348888888886 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0035
  PF13434.1 297 lpnreveaveaegkgeveltlrneesgeeetleadavvlATGYr 340
                l+ + + ++ +++ ++++l+l++++s+ ee+ ++d +v   GY+
  MMETSP0890-20130614|993_1 299 LRGVVISKIIKSQANSISLQLQKNNSQIEEERTVDLLVSLVGYK 342
                566677788888888****************************8 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   2.1e-06    0.0024       2      34 ..      19      51 ..      18      56 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
                ECEEE--------HHHHHHHHH.HHEEEEESSS CS
  PF01494.14  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekhs 34
                + V IVG+Gp Gl ++ +L++ G  v++ e+ +
   MMETSP0890-20130614|993_1 19 YHVGIVGSGPIGLYAGCVLAKIGYHVTIWERGE 51
                5799***********************999865 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.9e-06    0.0056      14      88 ..      15      92 ..       5     103 .. 0.80
   2 ?   -3.6   0.0       3.8   4.4e+03      20      38 ..     225     243 ..     220     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.9e-06
                HHTEEEEEEE-------HHHHHHHTSTS-EEEEES.SS---------------EEEETTT..HHHHHH-----EE-SS CS
  PF01946.12 14 kyaesDvvivGaGssGltaayylakkdlkvailer.klsiGGGawlGGqlfskvvvrkea..kelLdelgiryedegd 88
                k +   v ivG+G+ Gl a+ +lak + +v+i er +++    +w    lfsk  ++ ++  + +L+e g  + +++ 
   MMETSP0890-20130614|993_1 15 KXMTYHVGIVGSGPIGLYAGCVLAKIGYHVTIWERgEVAENVLSWKFVELFSKTELNLPSlvRSILEEAGHILPENDS 92
                56777899**************************95688888899999999887776664336777777766666555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.8
                 EEEE-------HHHHHHHT CS
  PF01946.12  20 vvivGaGssGltaayylak 38 
                 +++ G+G s +ta + ++k
   MMETSP0890-20130614|993_1 225 IAVLGSGYSAITALRQFSK 243
                 8899*******99988776 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.6e-05     0.018       2      35 ..      21      54 ..      20     114 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.6e-05
                EEEE----HHHHHHHHHHHTT-EEEEEESSSTTS CS
  PF01266.19  2 vviiGgGivGlstAyeLarrglkVtllekgdias 35
                v i+G+G +Gl +   La+ g++Vt+ e+g++a+
   MMETSP0890-20130614|993_1 21 VGIVGSGPIGLYAGCVLAKIGYHVTIWERGEVAE 54
                77*****************************997 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.5e-05     0.097      22      73 ..       7      55 ..       3      71 .. 0.80
   2 ?   -2.3   0.0       1.7   1.9e+03     127     147 ..     129     148 ..     125     174 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.5e-05
                --.--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--... CS
  PF02826.14 22 ewssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkee 73
                +w    + +gk+     vGi+G G IG  +  +l+++g +v++++r + +e+
   MMETSP0890-20130614|993_1  7 RW---IEAKGKKXMTYHVGIVGSGPIGLYAGCVLAKIGYHVTIWERGEVAEN 55
                55...667788888899***************************99866443 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.7
                 --GGGB-HHHHHHHHHH-TT- CS
  PF02826.14 127 aRGglvdeeaLleaLksgkia 147
                 +RG l++ e L+ aL++g i+
   MMETSP0890-20130614|993_1 129 GRGRLLKAEGLA-ALNQGAIR 148
                 555555555553.44444443 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05     0.066       2     159 ..      21     284 ..      20     423 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.8e-05
                EEEE----HHHHHHHHHHHTTSEEEEE...............CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH........................HHHHHHHHCTCEEEHCHEEEEEETTTTEE................EEEEEEEEEEEETEEEEEEESEEEE----B----.........TGCCH...T.EEEC.SSHHHHHHHHHHCSTTTEEEEE-......................................................- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx...x.xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................x RF
  PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvali...............ekeggtcvnrgclpkkllvevaegreeleelal........................kvvdelekagieilleknvvkidsgskkv................vqeagavkadekgkgrdikydklviAtGarprtl.........gipgv...e.vailargvedsdeilellekpkkvvvvG......................................................t 159
                v i+G+Gp Gl a   la+ g+ v++                e   +t +n + l  ++l e+                                    k++++  +  ++   +++v +i +g+  +                 +++  + ++ k++++  ++d l+ A+G +++            +pg+   e  +    + +  d ++++l + k+++v G                                                       
  MMETSP0890-20130614|993_1  21 VGIVGSGPIGLYAGCVLAKIGYHVTIWergevaenvlswkfvELFSKTELNLPSLVRSILEEA-----------GhilpendsyitggkfrsdillplaKWIESQPNCLVKT--KTQVKSIGRGRL-LkaeglaalnqgairrnSKFRILLFDTIKKEEFIETCDVLIDASGTYSKETalrsgmggiCCPGEdqaEsSGL--IHRIILDPADTSLFQGKRIAVLGsgysaitalrqfskvpeqakpayllwlvrsseekdpytiipddplpqrsalskfG 284
                669************************776655555544444444444444444444444444...........14555555567899999999999998886665555555..666666655543.2467777778888888877777777778888999999999999998877665566444443444332221111..222223333333333557777777777766666666666666666666666666666666666655555555555550 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.21       2      33 ..      21      52 ..      20      94 .. 0.84
   2 ?   -2.9   0.0       3.8   4.3e+03       2       9 ..     225     232 ..     224     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00019
                EEEE-------HHHHHHHTTEEEEEEE-S-HH CS
  PF01210.18  2 vavlGaGswGtalAkvlaenghevrlWvreek 33
                v+++G+G +G     vla+ g +v++W r e 
   MMETSP0890-20130614|993_1 21 VGIVGSGPIGLYAGCVLAKIGYHVTIWERGEV 52
                89**************************9873 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.8
                 EEEE---- CS
  PF01210.18   2 vavlGaGs 9  
                 +avlG+G 
   MMETSP0890-20130614|993_1 225 IAVLGSGY 232
                 9*****96 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00034      0.39       3      30 ..      21      48 ..      19      59 .. 0.91
   2 ?   -3.4   0.0       4.1   4.7e+03      67      90 ..     160     183 ..     146     185 .. 0.75
   3 ?   -0.3   0.0      0.46   5.3e+02       1      10 [.     223     232 ..     223     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00034
               EEEE------------TTT---EEE--- CS
  PF03721.9  3 iaviGlGYvGlptavvlaekghevvgvD 30
               ++++G+G +Gl ++ vla++g +v++ +
  MMETSP0890-20130614|993_1 21 VGIVGSGPIGLYAGCVLAKIGYHVTIWE 48
               89**********************9865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.1
                ---HHHHHHT-SEEEE-----B-- CS
  PF03721.9  67 ttdvkeavkeadvifiavgTpskk 90 
                t + +e ++ +dv++ a gT sk+
  MMETSP0890-20130614|993_1 160 TIKKEEFIETCDVLIDASGTYSKE 183
                455667789999999999987775 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.46
                -EEEEE---- CS
  PF03721.9   1 mkiaviGlGY 10 
                ++iav+G+GY
  MMETSP0890-20130614|993_1 223 KRIAVLGSGY 232
                59******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1547.06
//
Query:       MMETSP0890-20130614|1002_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-27   94.8   0.0    5.4e-27   93.8   0.0    1.6  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    1.2e-23   83.9   1.1    1.9e-11   44.1   0.0    3.3  3  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    1.1e-15   57.6   1.4    5.1e-15   55.5   0.0    2.4  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    2.1e-06   27.5   1.7     0.0091   15.8   0.0    2.8  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    3.7e-05   23.7   0.0      0.012   15.5   0.0    2.9  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
     0.0002   20.2   0.5       0.38    9.4   0.2    2.3  2  PF01134.17 Glucose inhibited division protein A
    0.00058   18.8   0.5       0.23   10.3   0.0    2.2  2  PF01494.14 FAD binding domain
    0.00076   17.9   1.5       0.25    9.6   0.4    2.8  3  PF03486.9  HI0933-like protein
     0.0047   15.9   0.0     0.0095   14.9   0.0    1.5  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
     0.0073   15.8   0.0      0.014   14.9   0.0    1.4  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.01   14.7   0.1        3.7    6.4   0.0    2.7  3  PF01946.12 Thi4 family
      0.042   14.0   0.0      0.093   12.9   0.0    1.5  1  PF13478.1  XdhC Rossmann domain
      0.057   12.8   0.0        7.7    5.9   0.0    2.6  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
       0.13   11.5   0.2       0.29   10.4   0.0    1.6  2  PF00164.20 Ribosomal protein S12
       0.23   10.1   2.3        0.2   10.3   0.6    1.6  2  PF00890.19 FAD binding domain
        1.8    7.2   5.1         33    3.0   0.5    3.3  4  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   6.3e-30   5.4e-27       1     108 [.     433     540 ..     433     542 .. 0.98

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 6.3e-30
                 BEEEEESSSEEEE----HHHHHHHT..EEEEEEEECCGHHTTTTT.CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHH CS
  PF02852.17   1 vpsvvftdpeiasvGlteeeAkkaggeikvgklpfkandralayaetkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealke 108
                 vp +++tdpe+a vGl e+e+ ++ ++++ +  ++k++dr + ++ tkgfvK+ + ++++ +lGa+iv+p+a++li+el+vai++g+ v+d+a  ++ +Pt +ea+++
  MMETSP0890-20130614|1002_1 433 VPWCTYTDPEVAHVGLYEHELDDKSIPYDSYIRQLKDVDRCKCEGITKGFVKISCVKDSDSILGATIVAPNAGDLISELSVAIQNGIGVKDIAGVMHSYPTTAEAIRQ 540
                 799******************************************************************************************************986 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   2.2e-14   1.9e-11       1     130 [.      75     232 ..      75     248 .. 0.79
   2 !   15.9   0.0   9.6e-06    0.0082       3     123 ..     252     362 ..     250     366 .. 0.57
   3 !   21.4   0.1     2e-07   0.00017     163     199 ..     366     403 ..     362     404 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 2.2e-14
                 SEEEE----HHHHHHHHHHHTTSEEEEE..CSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH.........................HHHHHHHHCTCEEEHCHEEEEEETTTTEE......EEEEEEEEEEEETEEEEEEESEEEE----B----TGCCH.T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali..ekeggtcvnrgclpkkllvevaegreelee.lal.........................kvvdelekagieilleknvvkidsgskkv......vqeagavkadekgkgrdikydklviAtGarprtlgipgv.e 130
                 d+v iG+G+aGl  ++  +  g k++li  + +gg c+ +gc p+k+l++ a+ + el++   +                         +++    + g+ ++ ++ + ++ +g++++      + ++     d++++ ++i++dk++i+tGa++ + +ipg  e
  MMETSP0890-20130614|1002_1  75 DLVAIGAGVAGLLSVIVGKSLGKKCLLIekHYMGGDCLIVGCFPSKALIACARKAYELKNcE-EfgihlngniqvdfpfimnrmrklraSIA---PHDGVLRYARDFCEDVVIGQAEFigkrslKIFD---ARDKDATPQEINFDKCIICTGASAVIVPIPGLrE 232
                 6899************************88889**********************9999844.35999999999999988877775443222...446666677788888888888889886653333...2335556899*********************742 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 9.6e-06
                 EEE----HHHHHHHHHHHTTSEEEEE....CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCTCEEEHCHEEEEEETTTTEE....EEEEEEEEEEEETEEEEEEESEEEE----B--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   3 viiGgGpaGlsaakdlaqkglkvali....ekeggtcvnrgclpkkllvevaegreeleelalkvvdelekagieilleknvvkidsgskkv....vqeagavkadekgkgrdikydklviAtGarprt 123
                 + iG+Gp G+++a  l ++g +v+++    +           l+     ++a+ ++++ +++ +v+ ++  +  ++ ++ n+++++ +s       v    a+   ++g+++++++++l+ AtG +p++
  MMETSP0890-20130614|1002_1 252 CLIGAGPIGIEMAQALQRFGCQVTIFeihtH-----------LLPREDQDAAKLVTQALIDD-GVHVHYSVKLHNVGIKGNATTVAYKSP-WsiyfV---EAT--LADGTNQTFECEALLNATGRAPNV 362
                 67************************44332...........33333334444444433222.233333333333333445555533333.122221...112..244557889999999999999875 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 2e-07
                 C.HHSS--BESSSSBBE-TTSBCSSTTEEE---TCEEE CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9 163 a.ekagveldprggivVdeylrtsvpgiyaiGDvaegk 199
                 + + agv+ d r g+ +d++++t+  +iya+GDv++++
  MMETSP0890-20130614|1002_1 366 GlDLAGVDYDTRSGVHIDDFFATTNAHIYAAGDVCSPY 403
                 55779*****************************9875 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3       1.2   1.1e+03       2      29 ..      76     103 ..      75     105 .. 0.85
   2 !   55.5   0.0     6e-18   5.1e-15       2      71 ..     251     320 ..     250     328 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 1.2
                 EEEE---HHHHHHHHHHHHTTSEEEEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvie 29 
                 +v +G+G+ Gl   ++ ++lgkk  +ie
  MMETSP0890-20130614|1002_1  76 LVAIGAGVAGLLSVIVGKSLGKKCLLIE 103
                 6789******999999999999988887 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 6e-18
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsad 71 
                  + +G+G iG+E+A+al+++g++Vt++e   +ll+ +d+++ak++++ l + g+ v++  k+ ++  +++
  MMETSP0890-20130614|1002_1 251 ACLIGAGPIGIEMAQALQRFGCQVTIFEIHTHLLPREDQDAAKLVTQALIDDGVHVHYSVKLHNVGIKGN 320
                 567********************************************************99998873333 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.5   0.00094       0.8       2      35 ..      79     111 ..      79     114 .. 0.92
   2 !   15.8   0.0   1.1e-05    0.0091       2      31 ..     254     283 ..     253     284 .. 0.96

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00094
   PF13450.1   2 vGaGlsGlvaAylLakagkdvlvlekrdrlGGra 35 
                 +GaG++Gl      +  gk++l++ek+ + GG++
  MMETSP0890-20130614|1002_1  79 IGAGVAGLLSVIVGKSLGKKCLLIEKH-YMGGDC 111
                 8*************************8.788877 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.1e-05
   PF13450.1   2 vGaGlsGlvaAylLakagkdvlvlekrdrl 31 
                 +GaG  G+ +A++L++ g +v+++e + +l
  MMETSP0890-20130614|1002_1 254 IGAGPIGIEMAQALQRFGCQVTIFEIHTHL 283
                 8**************************986 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.012       3     196 ..      79     277 ..      77     284 .. 0.73
   2 ?    4.8   0.0     0.026        23      90     162 ..     297     388 ..     282     400 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-05
   PF13738.1   3 vGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrlhqpsffssdfgvndleklsldsspkwrikaelasgeeisayledvarrlglkvrlstrvtevere.....gdr....fevrvtdg..revrakalvlatgavskpktlglpgsadkeavhleevlepedlkgkrvvVvGgghsAidallnLldlgqkltwi 196
                 +GAG aGl  ++     g +  ++++++  +Gg  l ++ f +    +   ++++++  e++ ++ + + +  +       +++  + +a + g+   +++ +++v+++     g+r    f  r +d   +e++ ++ +++tga  +    ++pg  ++ +++  ++++ e+l+++    +G+g  +i+++++L + g ++t++
  MMETSP0890-20130614|1002_1  79 IGAGVAGLLSVIVGKSLGKK-CLLIEKH-YMGGDCLIVGCFPSKALIACARKAYELKNCEEFGIHLNGNIQ-VDFPFIMNRMRKLRASIAPHDGVLRYARDFCEDVVIGqaefiGKRslkiFDARDKDAtpQEINFDKCIICTGA--SAVIVPIPGLRETPHLTNGNFFNLEELPPRA-CLIGAGPIGIEMAQALQRFGCQVTIF 277
                 89999999999999999999.8999998.899999988887666666555677777777777777765544.3555555667888888888888875566666777666444443222334555555558999999999*****7..7777789994445666667999999996655.8899************9999999987 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.026
   PF13738.1  90 dvarrlglkvrlstrvtevere........gdrfevrvtdg...............revrakalvlatgavskpktlglpg......sadkeavhleevlep 162
                 + + + g+ v++s +  +v ++        +        ++               ++++++al+ atg    p++ gl         + + +vh++++++ 
  MMETSP0890-20130614|1002_1 297 QALIDDGVHVHYSVKLHNVGIKgnattvayK--------SPwsiyfveatladgtnQTFECEALLNATGR--APNVSGLGLdlagvdYDTRSGVHIDDFFAT 388
                 4444458889999999999988444444444........444444444478888999************5..666655544556665444577888877665 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2   0.00044      0.38       2      51 ..      76     127 ..      75     152 .. 0.83
   2 !    8.6   0.0   0.00075      0.64       4      33 ..     253     282 ..     250     293 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00044
                 EEEE-------HHHHHHHH----EEEE..ES-GGG-----SSSEE------- CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgl 51 
                 ++ iG+G AG+   +  + lG k lLi      ++++ ++C ps   ia + 
  MMETSP0890-20130614|1002_1  76 LVAIGAGVAGLLSVIVGKSLGKKCLLIekHYMGGDCLIVGCFPSKALIACAR 127
                 678************************54334589**********9997655 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00075
                 EE-------HHHHHHHH----EEEEES-GG CS
  PF01134.17   4 ViGgGhAGceAAlaaarlGakvlLithkld 33 
                  iG+G  G+e A a+ r G++v+++  +++
  MMETSP0890-20130614|1002_1 253 LIGAGPIGIEMAQALQRFGCQVTIFEIHTH 282
                 6***********************966654 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.2     0.004       3.4       3      33 ..      75     105 ..      73     107 .. 0.91
   2 !   10.3   0.0   0.00027      0.23       5      35 ..     252     282 ..     250     300 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.004
                 CEEE--------HHHHHHHHH.HHEEEEESS CS
  PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekh 33 
                 d + +GaG aGl++  + ++ G +++l+ekh
  MMETSP0890-20130614|1002_1  75 DLVAIGAGVAGLLSVIVGKSLGKKCLLIEKH 105
                 56679*************************9 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00027
                 EE--------HHHHHHHHH.HHEEEEESSSC CS
  PF01494.14   5 lIVGaGpaGlmlallLseaGvrvvlvekhst 35 
                 + +GaGp G+  a+ L++ G +v++ e h+ 
  MMETSP0890-20130614|1002_1 252 CLIGAGPIGIEMAQALQRFGCQVTIFEIHTH 282
                 68***********************998765 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.4   0.00029      0.25       1      32 [.      74     105 ..      74     115 .. 0.89
   2 !    5.7   0.0    0.0044       3.8       4      33 ..     252     281 ..     249     286 .. 0.89
   3 ?   -0.8   0.0      0.44   3.7e+02     148     192 ..     342     387 ..     289     392 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00029
   PF03486.9   1 kdviviGgGaAGlmaAisaakrgakVllldka 32 
                 +d++ iG+G AGl++ i+ ++ g+k ll++k 
  MMETSP0890-20130614|1002_1  74 YDLVAIGAGVAGLLSVIVGKSLGKKCLLIEKH 105
                 58899*************************97 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0044
   PF03486.9   4 iviGgGaAGlmaAisaakrgakVllldkak 33 
                   iG+G+ G+  A ++++ g++V++++  +
  MMETSP0890-20130614|1002_1 252 CLIGAGPIGIEMAQALQRFGCQVTIFEIHT 281
                 67************************9765 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.44
   PF03486.9 148 kseeeleadklvlAtGGk.SiPklGstgkgyklaeqfghtivplrp 192
                  +++++e+++l+ AtG +  +  lG + +g++  ++ g++i ++ +
  MMETSP0890-20130614|1002_1 342 GTNQTFECEALLNATGRApNVSGLGLDLAGVDYDTRSGVHIDDFFA 387
                 3789999999999999652688899998888888888888877766 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05    0.0095      39      73 ..     251     285 ..     227     313 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
                 EE-B-------HHHHHHHH---EEEE--SS--... CS
  PF02826.14  39 vGiiGlGrIGqavakrlkafgmkvlaydrskkkee 73 
                  ++iG+G IG ++a+ l+ fg++v++++ +++   
  MMETSP0890-20130614|1002_1 251 ACLIGAGPIGIEMAQALQRFGCQVTIFEIHTHLLP 285
                 679***********************999876433 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.6e-05     0.014       4      46 ..     253     295 ..     250     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.6e-05
                 EE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHH CS
  PF02737.13   4 VvGaGtmGagiAavfaragleVvlvdiseealekalerieksl 46 
                  +GaG +G ++A+++ r g++V++++i+   l +  + ++k +
  MMETSP0890-20130614|1002_1 253 LIGAGPIGIEMAQALQRFGCQVTIFEIHTHLLPREDQDAAKLV 295
                 69*************************9999988888877744 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0044       3.7      18      60 ..      74     116 ..      66     148 .. 0.70
   2 ?    5.2   0.0      0.01       8.5      22      49 ..     253     280 ..     244     283 .. 0.92
   3 ?   -3.0   0.0       3.2   2.7e+03     142     166 ..     377     401 ..     354     419 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0044
                 EEEEEE-------HHHHHHHTS.TS-EEEEESSS---------- CS
  PF01946.12  18 sDvvivGaGssGltaayylakk.dlkvailerklsiGGGawlGG 60 
                  D+v +GaG +Gl +  +++k+ + k +++e++   G     G 
  MMETSP0890-20130614|1002_1  74 YDLVAIGAGVAGLLSV-IVGKSlGKKCLLIEKHYMGGDCLIVGC 116
                 699**********875.677777999999*99975554444444 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.01
                 EE-------HHHHHHHTSTS-EEEEESS CS
  PF01946.12  22 ivGaGssGltaayylakkdlkvailerk 49 
                 ++GaG+ G+  a+ l + + +v+i+e +
  MMETSP0890-20130614|1002_1 253 LIGAGPIGIEMAQALQRFGCQVTIFEIH 280
                 68***********************965 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.2
                 T-..T---EE-EEEEEEE------- CS
  PF01946.12 142 laglhvDPlvieakvvvdatGhdae 166
                 ++g+h+D  +  +++ + a+G  ++
  MMETSP0890-20130614|1002_1 377 RSGVHIDDFFATTNAHIYAAGDVCS 401
                 5677777777776666666665544 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.093       3      42 ..     253     293 ..     252     327 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
                 EE-----HHHHHHHHHH---EEEEEES-GGG-TT-SE.EES CS
   PF13478.1   3 ifGaghvaqalaklaaelgfrvtvvddreerfpaade.vek 42 
                 ++Gag+++ ++a+ ++++g++vt+++ +++ +p++d+   k
  MMETSP0890-20130614|1002_1 253 LIGAGPIGIEMAQALQRFGCQVTIFEIHTHLLPREDQdAAK 293
                 79**************************9999977773222 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.035        30      22      46 ..      75      99 ..      67     107 .. 0.82
   2 ?    5.9   0.0     0.009       7.7      22      82 ..     250     310 ..     245     327 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.035
                EEEEE-------HHHHHHHH---EE CS
  PF01262.16 22 kvvviGaGvvGlgAievakglgaev 46
                 +v iGaGv+Gl ++ v k+lg + 
  MMETSP0890-20130614|1002_1 75 DLVAIGAGVAGLLSVIVGKSLGKKC 99
                5788****************99776 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.009
                 EEEEE-------HHHHHHHH---EEEE--SSTTHHHHHHH----BSSS.-TTTCTTSB-B- CS
  PF01262.16  22 kvvviGaGvvGlgAievakglgaevvaldkrperleqveslgaefvevdrseeeerkeydk 82 
                 +   iGaG  G++ ++  ++ g++v++++     l   ++  a+ v++ + ++++  +y  
  MMETSP0890-20130614|1002_1 250 RACLIGAGPIGIEMAQALQRFGCQVTIFEIHTHLLPREDQDAAKLVTQALIDDGVHVHYSV 310
                 56789************************99998888888888888877777777666655 PP

>> PF00164.20  Ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       9.7   8.3e+03      88      99 ..     368     379 ..     362     381 .. 0.74
   2 ?   10.4   0.0   0.00034      0.29      65      94 ..     500     529 ..     483     539 .. 0.87

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 9.7
                 TB----EEBEE- CS
  PF00164.20  88 DlpGvrykvvkG 99 
                 Dl+Gv y    G
  MMETSP0890-20130614|1002_1 368 DLAGVDYDTRSG 379
                 99***9987665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00034
                 E-----TT--TTS-EEBE----TTB----E CS
  PF00164.20  65 yiPgeghnlqEhdevlirGgrvkDlpGvry 94 
                   P+ g+ + E ++ + +G++vkD++Gv +
  MMETSP0890-20130614|1002_1 500 VAPNAGDLISELSVAIQNGIGVKDIAGVMH 529
                 569************************965 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   0.00024       0.2       1      32 [.      75     106 ..      75     112 .. 0.93
   2 ?   -2.9   0.0       2.4   2.1e+03     377     406 ..     377     400 ..     370     406 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00024
                 SEEEE-------HHHHHHHCHTT-EEEE-SS- CS
  PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeq 32 
                 D+v iG+G+AGl + +  +  g+k++++ek  
  MMETSP0890-20130614|1002_1  75 DLVAIGAGVAGLLSVIVGKSLGKKCLLIEKHY 106
                 8999*************************975 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.4
                 ----B-------......S-B--EE----- CS
  PF00890.19 377 mgGvrtdenarvldadgqpipGLYAaGeva 406
                   Gv++d+ + +      + ++ YAaG v 
  MMETSP0890-20130614|1002_1 377 RSGVHIDDFFAT------TNAHIYAAGDVC 400
                 567888888888......889999999986 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.5     0.039        33       1      34 [.      75     108 ..      75     111 .. 0.90
   2 ?    2.4   0.0     0.062        53       4      29 ..     253     278 ..     250     282 .. 0.92
   3 ?    1.5   0.0      0.11        98     147     200 ..     289     357 ..     286     382 .. 0.85
   4 ?   -3.6   0.0       4.2   3.6e+03     282     307 ..     529     554 ..     499     557 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.039
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTT CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdia 34 
                 d+v iG+G++Gl   +  +  g k++l+ek+  +
  MMETSP0890-20130614|1002_1  75 DLVAIGAGVAGLLSVIVGKSLGKKCLLIEKHYMG 108
                 7888*************************98665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.062
                 EE----HHHHHHHHHHHTT-EEEEEE CS
  PF01266.19   4 iiGgGivGlstAyeLarrglkVtlle 29 
                  iG+G +G+  A  L r g +Vt++e
  MMETSP0890-20130614|1002_1 253 LIGAGPIGIEMAQALQRFGCQVTIFE 278
                 59**********************98 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHG--EEEESEEEEEEEEETTC.............EE.EEEEES....EEEEEEEE--- CS
  PF01266.19 147 aklvkalaraaeelGveiiegtkVtglereggr.............vsgvetedg...siradkvvlAaG 200
                 + ++k + +a+ + Gv+++  +k  ++ ++g+              v + +++dg   +++++++ +A+G
  MMETSP0890-20130614|1002_1 289 QDAAKLVTQALIDDGVHVHYSVKLHNVGIKGNAttvaykspwsiyfV-EATLADGtnqTFECEALLNATG 357
                 678899999***************99999999988999999888843.4778888554566699999998 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 4.2
                 CCTHHHHHHHHHHHHHHSGGGGGSEE CS
  PF01266.19 282 vdvdlevdelleaaakllpqlkdaei 307
                   +++  +++++ +a+++p l++  +
  MMETSP0890-20130614|1002_1 529 HSYPTTAEAIRQCCAQFFPKLRTPAL 554
                 45555577899999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.88
# Mc/sec: 1554.91
//
Query:       MMETSP0890-20130614|1013_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-59  201.8   1.4      2e-59  201.2   0.9    1.3  1  PF01266.19 FAD dependent oxidoreductase
    4.5e-08   32.2   0.1    1.3e-07   30.6   0.1    1.7  2  PF00890.19 FAD binding domain
    6.2e-08   32.6   0.0     0.0025   17.6   0.0    2.4  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    1.1e-06   27.8   0.3    2.7e-06   26.5   0.2    1.7  1  PF01494.14 FAD binding domain
    3.8e-05   22.7   0.1    7.9e-05   21.7   0.0    1.4  1  PF01946.12 Thi4 family
    4.9e-05   23.1   0.7    0.00011   22.0   0.5    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    0.00015   20.2   0.0     0.0082   14.5   0.0    2.1  2  PF03486.9  HI0933-like protein
    0.00023   21.3   0.1     0.0044   17.2   0.1    2.2  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    0.00058   18.7   0.1       0.04   12.6   0.1    2.1  2  PF01134.17 Glucose inhibited division protein A
     0.0036   16.3   1.0     0.0075   15.2   0.7    1.5  1  PF12831.2  FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.024   13.4   0.1       0.12   11.1   0.1    2.0  2  PF05834.7  Lycopene cyclase protein
      0.029   14.0   0.4          3    7.4   0.1    2.4  2  PF13454.1  FAD-NAD(P)-binding
      0.095   12.8   0.0       0.18   11.9   0.0    1.5  1  PF13241.1  Putative NAD(P)-binding
       0.13   11.5   0.0       0.24   10.6   0.0    1.4  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.9     2e-62     2e-59       1     357 [.      12     351 ..      12     352 .. 0.86

  Alignments for each domain:
  == domain 1    score: 201.2 bits;  conditional E-value: 2e-62
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTSSCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHH.HHHTSST.SBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTTTEEEE-HHHHHHHSTTBT...TTT--EEEETTEEEEEHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES..EEEEEEEE----THHHHHCCGTCCTTEEEEEEEEEEEE-TCCHSCCCEEEEEEEECGGTSEEEEEETTEEEE-EEESCEEESCBHHHH.HHHCCTHHH.HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHHH CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdiasgaSgrngglihagllkerdprllrlalesldllrel.aaetgid.vdfrrtgvldlasdeeeleelerlaerarangldvellsaeevrereplls...pdlkgglfypddgqvdpaklvkalaraaeelGveiiegtkVtglereggrvsgvetedgs.iradkvvlAaGawsskllkllgldlpirpvrgqvlvtepltdelaaavilgpvavldargvfvlpregevlvgttdgrldrgataeessgedvdvdle.vdelleaaakllpqlkdaeilrawaGlrpvtpdglpvigevpevpglyvatGhsghGftlapaaGkllae 357
                 dv+++GgG++GlstA+eL +rg++V++l ++ +a+ a+ ++gg+++++  +  +  ll+l+ e++ +++++ ++ +g + + +r  g +     ++  + ++ +   a+a   ++e+l++ +++++ep ls    +  gg++yp d +vdp +   al++a+e++G  i++g++V gl+   + + +v+++dgs i+a ++ lA Gaw ++   ll   +pi+p +gq+l++e+   + a++    p+ v  a+g++++pr + ++vg         at+e+s +     d + v +ll+ a+ l+p+l++ ++  awaGlrp t d++p++g+  ++++l+va G+ ++G+ lap a++l+++
  MMETSP0890-20130614|1013_1  12 DVCVVGGGVSGLSTALELRQRGRSVVVLSRD-LAQSATRAAGGMLAPQSERLEAGPLLDLCVEARAEWPKWaESSLGTNaPSIRAVGGFISP-CSSASDPIASWTPVASAG--PAEWLDGTALAAMEPCLSggrAQMFGGWWYPLDCSVDPIETHLALYQACEQAGIIIRTGVEVAGLDLTSKSCDAVRLSDGSrIHAGHICLANGAWLRS---LLP--VPIYPQKGQMLRLERKSGANAPPP---PDRVIYANGCYLIPRGNDLIVG---------ATVEDSDS--PHADIRgVSQLLDSALSLCPGLASWSLADAWAGLRPNTLDSNPILGP-TRWQNLWVAGGYWRNGILLAPRAARLVVD 351
                 8***************************999.****************7544556****************444445445568888888777.455555565555555555..679**************97656999*******************************************************99****************...343..49*************999997776...55555579********999999.........44444422..222223366**************************************.7**************************97 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   1.4e-10   1.3e-07       1      48 [.      12      57 ..      12      81 .. 0.84
   2 ?   -2.4   0.0       1.4   1.4e+03     145     203 ..     164     215 ..     160     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.4e-10
                SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-----B-- CS
  PF00890.19  1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsqGgidav 48
                Dv V+G+G++Gl+ Ale++++g++v+v++   + ++at++++G++ a+
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLSRDLA-QSATRAAGGML-AP 57
                99****************************998.66666666655.44 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.4
                 HHHHHHHC-TTEEEE-SEEEEE--BG--BB---EEEETTT-SEEEEEES.EEEE----- CS
  PF00890.19 145 rllesareagkvdfqerhradeLivedgrvtGvvvenprsgrevrirakaavvlatgGf 203
                 +l++ +++ag + +++  +++ L  +++ +  v ++  +++r   i+a  ++ la g +
  MMETSP0890-20130614|1013_1 164 ALYQACEQAG-IIIRTGVEVAGLDLTSKSCDAVRLS--DGSR---IHAG-HICLANGAW 215
                 6888999998.9999999999999999999999888..6666...4455.666777766 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.5e-06    0.0025       1      30 [.      12      41 ..      12     102 .. 0.83
   2 !   12.7   0.0   7.9e-05     0.077      62     127 ..     164     223 ..     120     242 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.5e-06
                SEEEE----HHHHHHHHHHHTTSEEEEECS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9  1 dvviiGgGpaGlsaakdlaqkglkvaliek 30
                dv+++GgG+ Gls+a++l+q+g  v+++++
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLSR 41
                79************************9933 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 7.9e-05
                 HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----.TGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
   PF07992.9  62 kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtl.gip 127
                 ++++ +e+agi i+++ +v+ +d +sk+  ++a+       ++g +i+++++ +A Ga+ r l ++p
  MMETSP0890-20130614|1013_1 164 ALYQACEQAGIIIRTGVEVAGLDLTSKS--CDAVR-----LSDGSRIHAGHICLANGAWLRSLlPVP 223
                 689999*********************4..55544.....566899************955543665 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   2.8e-09   2.7e-06       1      47 [.      10      56 ..      10     234 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.8e-09
                EECEEE--------HHHHHHHHH.HHEEEEESSSCCCH------BEH CS
  PF01494.14  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekhsttvvlprAdglnq 47
                ++dV++VG+G +Gl++al+L+++G +vv++ +   ++ +  A+g+  
  MMETSP0890-20130614|1013_1 10 KVDVCVVGGGVSGLSTALELRQRGRSVVVLSRDLAQSATRAAGGMLA 56
                58******************************998888877766654 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.1e-08   7.9e-05      17      62 ..      10      55 ..       5      62 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.1e-08
                EEEEEEE-------HHHHHHHTSTS-EEEEESSS------------ CS
  PF01946.12 17 esDvvivGaGssGltaayylakkdlkvailerklsiGGGawlGGql 62
                ++Dv +vG+G sGl++a  l +++  v++l r l+       GG+l
  MMETSP0890-20130614|1013_1 10 KVDVCVVGGGVSGLSTALELRQRGRSVVVLSRDLAQSATRAAGGML 55
                57******************************************98 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.5   1.1e-07   0.00011       1      25 [.      15      39 ..      15      56 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.1e-07
   PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvl 25
                +vG+G+sGl++A +L+++g++v+vl
  MMETSP0890-20130614|1013_1 15 VVGGGVSGLSTALELRQRGRSVVVL 39
                8**********************98 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.4e-06    0.0082       2      30 ..      12      40 ..      11      49 .. 0.92
   2 ?    3.5   0.0     0.018        18     114     163 ..     164     213 ..     148     217 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.4e-06
   PF03486.9  2 dviviGgGaAGlmaAisaakrgakVllld 30
                dv v+GgG +Gl +A+++ +rg++V++l 
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLS 40
                89************************986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.018
   PF03486.9 114 allkelkeagvkirletevksvekeedgafrvktkseeeleadklvlAtG 163
                 al +++++ag+ ir+  ev++++ ++++   v+++++++++a ++ lA G
  MMETSP0890-20130614|1013_1 164 ALYQACEQAGIIIRTGVEVAGLDLTSKSCDAVRLSDGSRIHAGHICLANG 213
                 6899************************99****9*************98 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.5e-06    0.0044       2      30 ..      13      41 ..      12      43 .. 0.93
   2 ?    1.5   0.0      0.36   3.5e+02      50      78 ..     169     198 ..     159     200 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.5e-06
                EEEE---HHHHHHHHHHHHTTSEEEEEES CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvier 30
                v+vvGGG++Gl  A +l++ g +V v+ r
  MMETSP0890-20130614|1013_1 13 VCVVGGGVSGLSTALELRQRGRSVVVLSR 41
                79**********************99876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.36
                 HHHTTEEEETTEEEEEEEESEEEEE.EEEE CS
  PF00070.22  50 lekngievllntkveeiegsadgve.vkle 78 
                  e+ gi ++++ +v+ ++ +++    v+l+
  MMETSP0890-20130614|1013_1 169 CEQAGIIIRTGVEVAGLDLTSKSCDaVRLS 198
                 577899999999999998666554446665 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   4.1e-05      0.04       1      33 [.      12      44 ..      12      59 .. 0.85
   2 ?    3.7   0.0      0.02        20     117     155 ..     181     219 ..     156     235 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-05
                SEEEE-------HHHHHHHH----EEEEES-GG CS
  PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLithkld 33
                dv V+GgG +G+  Al++ ++G +v+ +  +l 
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLSRDLA 44
                79***********************99855544 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.02
                 -EEE--BSSSBB---EE----B-EESEEEE-----B--- CS
  PF01134.17 117 eveeliveekkvkgvvtedgetikakavviatGtflkgk 155
                 ev+ l++++k++ +v+++dg+ i+a ++ +a G++l++ 
  MMETSP0890-20130614|1013_1 181 EVAGLDLTSKSCDAVRLSDGSRIHAGHICLANGAWLRSL 219
                 788899999*************************99875 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.7   7.7e-06    0.0075       1      30 [.      12      41 ..      12      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.7e-06
   PF12831.2  1 DvvVvGGgpaGvaAAiaAarlGakvlLver 30
                Dv+VvGGg +G+  A+   ++G++v++++r
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLSR 41
                9*************************9986 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00013      0.12       1      29 [.      12      40 ..      12      79 .. 0.81
   2 ?   -1.0   0.0      0.59   5.7e+02     103     161 ..     176     235 ..     157     241 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00013
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvll 29
                D+ +vG+G +gl+ Al+lr++  ++ vl 
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLS 40
                9*****************66655444444 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.59
   PF05834.7 103 llleakvesveeeea.eslvvledgetiearlvidargasakkaltvglqtflGveveve 161
                 +++  +v+ ++ +++    v+l+dg++i+a  +  a ga  ++ l v +    G+ +++e
  MMETSP0890-20130614|1013_1 176 IRTGVEVAGLDLTSKsCDAVRLSDGSRIHAGHICLANGAWLRSLLPVPIYPQKGQMLRLE 235
                 44556777777777666789*************999998777666666666666666665 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0031         3       2      20 ..      15      33 ..      14      59 .. 0.83
   2 ?    4.3   0.0     0.028        27     119     154 ..     177     213 ..     161     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0031
   PF13454.1  2 IiGaGprGlsvlerLlara 20
                ++G+G++Gls++ +L +r 
  MMETSP0890-20130614|1013_1 15 VVGGGVSGLSTALELRQRG 33
                9**************9984 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.028
   PF13454.1 119 vhraevvdlepegdg.qtvlladgesleadaVvlAtG 154
                     ev  l+ + ++  +v+l+dg++++a ++ lA G
  MMETSP0890-20130614|1013_1 177 RTGVEVAGLDLTSKScDAVRLSDGSRIHAGHICLANG 213
                 445688888888888469*****************99 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.18       9      44 ..      12      45 ..       3      96 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
                EEEEE-------HHHHHHTT---EEEEE-SS--TT- CS
   PF13241.1  9 kvlvvGgGevAarkvrklleagakvtvvspeikele 44
                 v+vvGgG  +++ +  l + g +v+v+s ++  ++
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLSRDL--AQ 45
                69****************************95..33 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00025      0.24       6      45 ..      12      51 ..       7      63 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00025
                -EEEE-------HHHHHHHH----EEE------HHHHHHH CS
   PF07991.7  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvekak 45
                 ++v+G G  G + al lr+ g  vvv  r+ ++s+++a 
  MMETSP0890-20130614|1013_1 12 DVCVVGGGVSGLSTALELRQRGRSVVVLSRDLAQSATRAA 51
                699************************9999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:01.17
# Mc/sec: 1175.65
//
Query:       MMETSP0890-20130614|1015_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00036   20.5   0.0    0.00072   19.6   0.0    1.5  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.2e-08   0.00072       3      57 ..     164     225 ..     162     264 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 5.2e-08
                 BEEEEEEEE........TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEE CS
  PF00169.24   3 keGyllkks........ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkka 57 
                 + G+llk s        ++l  wkkryfv   + L yf+++      + kgs+pl++ + +  
  MMETSP0890-20130614|1015_1 164 HRGWLLKLSrnrkggrfSGLTGWKKRYFVCGYGLLAYFDNDP-ARGGKQKGSFPLSNSDADGL 225
                 78***************************************9.699**********9976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.46s 00:00:01.14 Elapsed: 00:00:01.06
# Mc/sec: 938.20
//
Query:       MMETSP0890-20130614|1024_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-14   52.4   0.3    4.7e-14   52.2   0.2    1.1  1  PF01217.15 Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> PF01217.15  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.2   3.4e-18   4.7e-14       4     138 ..       9     148 ..       6     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 3.4e-18
                 EEEEE-----EEEEEE...SS---HHHHHHHHHHHHHHHHTS-SSS..-SEEEETTEEEEEEEETTEEEEEEE-----HHHHHHHHHHHHHHHHHH--.---HHHHHHHHHHHHHHHHTTB----BS---HHHHHHHHHHH CS
  PF01217.15   4 aililnkkgkvrlakf...ytavddkkkqklieevyelvsaRdskl..sniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfg.nVceldlvfnfekvylildEivsgGeiletskkevlkrvell 138
                  +lil+ +g++ +ak+   + + + + +qk  +++   +++  +    ++i+ l+++  iY+   +   +v+ +  ene+i+  +++ +  +L+++++ +   + ++ n+e   l +dE+v+gG ile++++++++rv ++
  MMETSP0890-20130614|1024_1   9 SVLILDGEGRRIIAKYnkgFCQNSLEIQQKFEQKLF-KKTKNSPVRsdADIIMLDNTICIYRAAGDAKVYVVGSMDENEIILNMVLDALYTALSTLLRgQMDARSILDNLELTMLSVDELVDGGIILEIDPQNIVNRVLMR 148
                 69*************943344555555555444443.3333322223389**************999999***************************999*************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 671.71
//
Query:       MMETSP0890-20130614|1025_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-10   39.7   0.0    1.1e-09   38.2   0.0    1.8  2  PF03517.8 Nucleotide-sensitive chloride conductance regulator (ICln)
  ------ inclusion threshold ------
      0.065   12.9   0.1        2.3    7.9   0.0    2.2  2  PF11605.3 Vacuolar protein sorting protein 36 Vps36


Domain annotation for each model (and alignments):
>> PF03517.8  Nucleotide-sensitive chloride conductance regulator (ICln)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.68   4.7e+03      42      54 ..      33      44 ..      17      59 .. 0.51
   2 !   38.2   0.0   1.7e-13   1.1e-09       3      99 ..      65     159 ..      63     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.68
   PF03517.8 42 clYlqlet..eeaae 54
                ++Y+  +t  +   +
  MMETSP0890-20130614|1025_1 33 HIYVVRDTtqM---N 44
                55555555321...2 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 1.7e-13
   PF03517.8   3 lfvtsekllllseeass.G...vsipYpsislHAisrdpe..pepclYlqleteeaaeeeeeeedeeeesveltlvpedketsldelfealsecsalhpdped 99 
                 l vts++l++  + +s  G   +s++   + lHA +rdp+  p+pclY ql         e    +  +  el lvp+++ ++l +lfe +s+ +al+pd +d
  MMETSP0890-20130614|1025_1  65 LRVTSRRLIWERQGESVnGmknFSLDMLLVGLHAATRDPDtfPQPCLYAQLLL-------ERFPPSPTHPSELFLVPRNA-DNLSDLFEFVSKAAALNPDFDD 159
                 679********999888777779****************9*************.......222234455789******99.*******************887 PP

>> PF11605.3  Vacuolar protein sorting protein 36 Vps36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.014        92      13      27 ..      22      36 ..      15      46 .. 0.85
   2 ?    7.9   0.0   0.00034       2.3      34      57 ..      59      82 ..      53      99 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.014
   PF11605.3 13 nEslilvqdnVglYe 27
                +E+++++ d+V +Y 
  MMETSP0890-20130614|1025_1 22 DEEILYSLDDVHIYV 36
                8*************6 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00034
   PF11605.3 34 nrqnGrvyLTshrliyvdsadpkk 57
                ++ +G + +Ts+rli+ ++ +  +
  MMETSP0890-20130614|1025_1 59 DWGQGLLRVTSRRLIWERQGESVN 82
                677999**********99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|1023_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1410.81
//
Query:       MMETSP0890-20130614|1027_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 676.62
//
Query:       MMETSP0890-20130614|1029_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.2   0.0    2.7e-08   33.3   0.0    1.5  1  PF00085.15 Thioredoxin
    3.6e-05   22.5   0.6    5.4e-05   21.9   0.4    1.4  1  PF02114.11 Phosducin


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.9e-12   2.7e-08       4      90 ..     163     247 ..     160     257 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 3.9e-12
                 ESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE-- CS
  PF00085.15   4 vltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveeveg 90 
                 ++++++f +ev++ +k+++v+f+ +    Ck +  ++ ++a+++  + +++k+d+ + +  ++++++++iPt+++f +g  +e+++g
  MMETSP0890-20130614|1029_1 163 QIAEDEFLREVTA-SKKCVVHFFHTDFERCKIMDHHLRTIATKHI-EAKFVKIDAAKTPFFVTKLTIRVIPTVIVFIDGIAKERLTG 247
                 677899*9****9.999999**99999******************.9******************************9998888777 PP

>> PF02114.11  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   7.9e-09   5.4e-05      93     222 ..     122     256 ..      62     278 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 7.9e-09
  PF02114.11  93 idkdkddeeflrkyrkqrmdemrq....klskgprfkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvig.asdrfsrdvlpallvykag...ellsnfvrvtdqla 222
                 +d   dde+ l + r qr+++++q    k++   r +  +   + ++fl  +   +k    vvh +    + ++ ++  l  +a+++   kf k+ a+++     +++  v+p+++v+  g   e l+ f  +td l 
  MMETSP0890-20130614|1029_1 122 FDSCVDDEDELDQLREQRLKQLKQahqeKMDNVRRGHGSYTQIAEDEFLREVTASKK---CVVHFFHTDFERCKIMDHHLRTIATKHIEAKFVKIDAAKTPfFVTKLTIRVIPTVIVFIDGiakERLTGFDGLTDGLE 256
                 5667899**********9999887322234444444455666667788888877666...699**********************************999725799***********986644477888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       913  (0.0667788); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.59
# Mc/sec: 1425.63
//
Query:       MMETSP0890-20130614|1033_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-29  100.7  13.5    1.5e-17   62.7   5.7    2.9  3  PF10191.4 Golgi complex component 7 (COG7)


Domain annotation for each model (and alignments):
>> PF10191.4  Golgi complex component 7 (COG7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   5.7   1.1e-21   1.5e-17      11     445 ..      13     448 ..       9     466 .. 0.82
   2 !    1.2   0.0    0.0043        59     570     639 ..     567     643 ..     524     650 .. 0.72
   3 !   37.9   0.2   3.3e-14   4.6e-10     668     761 ..     726     822 ..     712     830 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.1e-21
   PF10191.4  11 dvkdWiNaafkarqkedalekadafvsslvskLqlyvqevnaalEessaqalknvPrvlrdvealrdeassLkekmaqvkqdikkveqdtaesmaaLerldtvkqrlqaakesLqeadgwgk.Lsae..ledvfes.qdlkk...asekLislqksLsalvevpefaerrkqlEvlknRLealvspsvvdalssqkv....dqakkyvkifieidRlkqLeqyYrkvhkkqlkelWedllekqrakkvelslasvLtefydellelleqqlkWcsqvFkeeyelvlkllv.etleaLqpslesrvnealk.ravpetkleaLielsnvtgsfarnleklleeslaesdllkllellkavyspfetfk.kkYgklEesllsaelaaldlega.....evsdtV.releesvakvikll.eaAveRCiklTqgleldeLvkaLddlllkyvskfqevl 445
                 dv+  +N  +++++ke +le++   +s + ++Lq+++ ++   +Ee  +++ +  P +  +++ +        ++ + +++   + +++  e +  L rl+ +++ +   ++ L+ea+gw + L ++    ++f++ + ++k   a++ L +l ks ++l ++p   er+  l  l + Lea   p++ +a+++       +   ++  ++++++R + L+  Y + + + l+++W   + +q     e +las++++f++++l+l  q+     ++F+ + e+   +++  +l+ L +s  + + + ++ +av+   le  i  +    ++++++++ ++   ++  l+ +   ++a  +pfe+   ++Y + E +lls+    ++ ++      e +  V +e   s   +++   +a  +RC+ l  g +  + + a++  ++k ++++ ++l
  MMETSP0890-20130614|1033_1  13 DVVGFVNKVLNETKKE-SLESG---LSGMSMRLQIMSVDLEEEVEEWLKELKRVAPLAKGEALSVGRLMNAVEDETKGMLRRYTQRKEEEPEAL-LLSRLEIIRKNMFQVQQILREAQGWEQnLEQSrqALETFRTeKSIEKaetAASALNNLTKSETILRNMPASNERKSALVELGDDLEAALRPQLSEAIAQVTDeknnELLLRLSTVYEKMNRAEALRTTYANARPVNLHRMWFAKDLHQ-----EKHLASWIQDFFQNILQLATQEA----TLFPVHPEKTAAAVArAALTPLTASYADALIHIVRrDAVKG--LEDAIACKTLGLELSHKIQTEIKCDAKD-ALQ-V--AIAAASVPFEILSlQHYASAEVALLSILATSINTQEIsittpEALGMVlEEAAGSFDNLFVHGtSASLKRCQILSAGFAGEQVIAAIRTAVAKRLDTLANML 448
                 7888999999888777.89999...************************999999******************************999999987.69***********************86354331134566551456541226788999************************************99998765533337778899****************************9999987.....5589*************999995....788888885555555268*****999887777665167777..********************99994444.333.3..46777789*9986267******9998655544444433333366666623456688888887515668***************************9998876 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.0043
   PF10191.4 570 tsqrlkrladevhdlvldvllskikqrlkevsrleiwssagveetl...tddLPsfS....laPqeyvtsigqYllt 639
                  ++ + rla ++  l+++ ++ ++++ l ++s+  +   ++ + +     +++  f     + P  yvt +g+ l +
  MMETSP0890-20130614|1033_1 567 LEASIDRLAAKASGLAFKLAFAPVRAALRRISATRAPFDQAYDAQVvayCEPVQWFGkheeIRPSHYVTIVGEHLAS 643
                 4577899999*********************8888777767766541113456566422225688888888888765 PP

  == domain 3    score: 37.9 bits;  conditional E-value: 3.3e-14
   PF10191.4 668 sekeeeneelqafAdewlfkvaeeatalYveqirqikslsasgakQLatDIeYlsnVle.alglsisrtLqqivtllkaprd.eyrdvak.gldlrl 761
                 +e  ++ e +q fA+ wl  + ++++a +++++  ++ + ++ga QL+tD+ Yl  Vl+ al l++   L ++++l +a    ++ d+++ +l+++ 
  MMETSP0890-20130614|1033_1 726 QEDAADDEPAQRFATRWLIYLQRATVAAFIDELIRVPNMDDQGAAQLTTDLTYLKHVLSvALDLKPHALLDHLLVLSQASTKrDLDDIIRrQLPPNS 822
                 555688999*************************************************989************999876543144555444666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.25u 0.41s 00:00:01.66 Elapsed: 00:00:01.38
# Mc/sec: 1465.60
//
Query:       MMETSP0890-20130614|1032_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-13   48.0   0.0    6.2e-09   35.4   0.0    2.4  2  PF00270.24 DEAD/DEAH box helicase
    1.3e-09   37.6   0.0    3.1e-09   36.4   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain
    1.9e-06   27.7   0.0    4.5e-06   26.5   0.0    1.6  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.082   12.0   2.3         22    4.0   0.0    3.2  3  PF12846.2  AAA-like domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.8e-12   6.2e-09       2      89 ..     168     251 ..     167     266 .. 0.80
   2 !   10.2   0.0   9.9e-05      0.34     103     168 ..     310     398 ..     298     403 .. 0.65

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.8e-12
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHH.HHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvl.qilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvala 89 
                 + Q e+i  +l ++d lv a+TG GK+ +f++p+l  ++++t     ++ +l+++P+  L++++++n+++ +k+ + +  l+  ++  +
  MMETSP0890-20130614|1032_1 168 QFQVEVILDLLYNKDGLVIAPTGFGKSVMFQLPALiHHFIDT-----RNFVLVISPLLLLIADQCQNFQEKTKKNNWNSYLLARSSMPR 251
                 5799999999999*******************9884566654.....55*******************999999777777775544433 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 9.9e-05
                 EEEEHHHHHHHHHH...CCH.HTTTEEEEEECTHHHHHCT..TTHH.......HHHHHHHHSHHTTT........SE.EEEEESS-T.H CS
                 xxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxx..xxxx.......xxxxxxxxxxxxxx........xx.xxxxxxxxx.x RF
  PF00270.24 103 vvgTpgrlddlvst...gkl.nlsqvrllVlDEadrllsq..gfsd.......qlnqilqilcdgkr........lq.vivlSATlp.k 168
                 ++ Tp++l++   +          +v+ +++DEa+ ++ +  +f++       +ln + +  ++  r        ++  + ++ATl  +
  MMETSP0890-20130614|1032_1 310 LYLTPEKLLSQRWSdflIDAfAEGHVKAIIFDEAHSIHCMgtSFRPsyckvgaHLNALFSFANQHRRgsgkgaeiRPcRCGFTATLApS 398
                 6667777544433323312212356**********999986677775555555555555554444338888899844599999999755 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   9.1e-13   3.1e-09       4      77 ..     478     551 ..     476     552 .. 0.96

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 9.1e-13
                 HH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------T CS
  PF00271.26   4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRa 77 
                 ++ ++++++lhg++  +e+++ l++ +++ + + ++t+ ++ Gid++d+  V    lp + ++++Q +GR++R 
  MMETSP0890-20130614|1032_1 478 NNSDVSCVKLHGDIGVQEKLDALQKIRDDHCYIACCTDSFGLGIDIKDIFAVHEIFLPLTLEDLHQKLGRVARD 551
                 567899*******************************************************************6 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-09   4.5e-06       5     164 ..     167     361 ..     108     396 .. 0.60

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-09
  PF04851.10   5 rpyQeeaienllesiekedekkrglivmaTGtGKTlvaa..sliarlar..kflflv.prkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esks.......................................eslealldefd.........viiiDEaHrlsakkk.........y 164
                  + Q e+i +ll        +k gl+ ++TG GK+++    +li +++   +f++++ p   l+    ++f            ++  ++++++ +    +++ +k+e+++++ ei+   +  l  +l    +++ +  +                                                 +          ii+DEaH ++ +            
  MMETSP0890-20130614|1032_1 167 FQFQVEVILDLL-------YNKDGLVIAPTGFGKSVMFQlpALIHHFIDtrNFVLVIsPLLLLIADQCQNF------------QEKTKKNNWNSYLLARSSMPRKDENDANEDEILSDLALALLHKLLPSTDIEeSDTRdfdldnldgqtindfkngfggallyltpekllsqrwsdfL---------IdafaeghvkAIIFDEAHSIHCMGTsfrpsyckvG 361
                 334444444444.......4789************887744455555559966666538888888888999............222234567778888888888888888888888766555555555545555233336667777777777777777777777666665555444443.........0555566666********99887766677744440 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3    0.0071        24     112     230 ..      50     179 ..      26     181 .. 0.65
   2 ?    4.0   0.0    0.0063        22       5      34 ..     184     215 ..     180     218 .. 0.68
   3 ?    1.7   0.0     0.033   1.1e+02     228     256 ..     320     346 ..     277     357 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0071
   PF12846.2 112 eaalsralrelyeeegiatlaqrqayPt.lgdllealreeeeelaeealarde.........rreaaeelal...alerlldgalge...lFdgpttfdldldariivfdlsglkgpgteeedkalaaavllaiw 230
                 ++++ r++r+l  +++ +  a+ +a+ t l+d+ ++l+e+++el++ +++ d          ++e++e l++    l++   +   +   +  ++ + + d    i  f ls + ++++   +++++ ++l +++
  MMETSP0890-20130614|1032_1  50 STVVTRIVRDLDSDAAYD-PAKVRAWATeLKDFSNVLNEASQELFAIGDHLDFldpkkpkeaTTEQIEALRNiviNLYSTA-SKTKNddtIAEEEENENNDGG--ILDFSLSLIGLNTSM-LFQFQVEVILDLLY 179
                 566666777555555555.4444577788************9999888888888888888886666666666311333331.222224555555555555555..777777777766665.77777777776666 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0063
   PF12846.2   5 lilGppGsGKSvllkkl..vlqllargprvvi 34 
                 l+++p+G+GKSv       + +++  + +v++
  MMETSP0890-20130614|1032_1 184 LVIAPTGFGKSVMFQLPalIHHFIDTRNFVLV 215
                 89*********765432226666666666665 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.033
   PF12846.2 228 aiwaaarrnfrapkdlrd.........kllviDEahrl 256
                   w+++                     k++++DEah +
  MMETSP0890-20130614|1032_1 320 QRWSDF-----------LidafaeghvKAIIFDEAHSI 346
                 334444...........3444444555*********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:00.94
# Mc/sec: 1929.83
//
Query:       MMETSP0890-20130614|1037_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-131  435.8   0.0   4.3e-131  435.6   0.0    1.0  1  PF05221.12 S-adenosyl-L-homocysteine hydrolase
    1.4e-75  252.4   2.6    2.1e-75  251.9   1.8    1.2  1  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
    6.2e-08   31.8   0.2    1.1e-07   31.0   0.2    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    0.00077   19.5   0.3     0.0024   17.9   0.2    1.8  1  PF13241.1  Putative NAD(P)-binding
    0.00081   18.6   0.1     0.0015   17.8   0.1    1.4  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
    0.00082   18.3   1.3     0.0033   16.3   0.9    1.9  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
  ------ inclusion threshold ------
      0.013   15.3   0.2      0.054   13.3   0.1    2.1  2  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF05221.12  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.6   0.0  2.2e-134  4.3e-131       2     268 .]       5     479 ..       4     479 .. 0.98

  Alignments for each domain:
  == domain 1    score: 435.6 bits;  conditional E-value: 2.2e-134
                 --B-S-GGGTT---HHHHHHGGG----HHHHHH-----TTTT-EEE-----SHHHHHHHHHHHH---EEEEE-SSTTT--HHHHHHHT.STTEEEE--TT--HHHHHHHHHHHH----....-----EEEE----HHHHHH-.........................................HHHHHHTT----EE-S----HHHHHHHHTT---S-EEESTTSHHHHTTT.................................................................................................................................................................--HHHHHHHHHHHHHHHHHHHHTTTSSS-.-SSEE---HHHHHHHHHHHTCCCT-------HHHHHH---------S-TT-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05221.12   2 eykvkdislaefGrkelelaekemPGlmalreeygdskPlkgakiaGclhmtvqtavlietlkalGaevrwascnifstqdaaaaaia.kagvpvfawkgeteeeylwcieralkfkd....gkklnlilddGGdatllvlk.........................................kytellkkikGvseetttGvkrlyklekegklkvpainvndsvtkskfd.................................................................................................................................................................hpsfvmsvsftnqvlaqielfekkdtgky.ekkvyllPkkldekvaklhlakldvkltkltdeqaeylgvpveGPfksdeyr 268
                 +y+v+disla+fGr+e++lae emPGlm+  ee+g+s+Pl ga+iaG+lhmt+qtavlietlk+lGa+vrw+scnifstqd+aaaaia  ++++vfawkget+eey++c+ +a+++++    g +++li+ddGGd+tllv++                                         k+++++++++GvseetttGv+rly +++ g+l++painvndsvtkskfd                                                                                                                                                                 hpsfvms+sftnq+laq+el++++++gky + kvy+lPk ldekva+lhla+l+v lt l+deqa+y+gv++ GPfk+d+yr
  MMETSP0890-20130614|1037_1   5 DYRVADISLADFGRREISLAEYEMPGLMKTVEEFGASQPLAGARIAGSLHMTIQTAVLIETLKKLGANVRWCSCNIFSTQDHAAAAIArDESAAVFAWKGETLEEYWECTLNAITWTNpdekGDGPDLIVDDGGDMTLLVHEgykaeeayakdgtlpdpnstdnaefkivltiikrelpkqpdKWHKVAARMFGVSEETTTGVHRLYAMSTAGELLFPAINVNDSVTKSKFDnlygckhslpdgicratdvmlagkravicgygdvgkgcafamkaagcivtvtevdpicalqaamegfavktlesqladldivitttgnkgiitcdsmskmrdnaivgnighfdneidmdglmkattrmnikpqvdkfifpngmgpivlaegrllnlgcatgHPSFVMSNSFTNQTLAQLELWKERNSGKYaKGKVYVLPKILDEKVASLHLASLKVDLTVLSDEQADYIGVAKTGPFKPDTYR 479
                 7***************************************************************************************556899**********************752222578*********************************************************************************************************************************************************************************************************************************************************************************************************5568************************************************9 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   1.8   1.1e-78   2.1e-75       1     162 []     237     397 ..     237     397 .. 0.99

  Alignments for each domain:
  == domain 1    score: 251.9 bits;  conditional E-value: 1.1e-78
                 CCHHHTTTTT---HHHH-S-----EEEEE---------HHHHHH---EEEE--S-HHHHHHHHC---EE--HHHCTTT-SEEEE-----SSB-HHHHCCS-TTEEEEE---TTTTBTHHHHHTTT-EEEEEETTEEEEE-----EEEEE-----SGGGT--- CS
  PF00670.16   1 nlygcreslvdgikratdvliaGkvavvaGyGdvGkGcaaslkalGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitlehlekmkddaivcniGhfdseidvaaleanalkkeevkpqvdrytlkdgkkiillaeGrllnlgcatg 162
                 nlygc++sl dgi ratdv++aGk av++GyGdvGkGca ++ka+G++v+vtevdPicalqaameGf v+tle   ++ div+tttGnk iit + ++km+d+aiv+niGhfd+eid+++l++  ++++++kpqvd++ +++g   i+laeGrllnlgcatg
  MMETSP0890-20130614|1037_1 237 NLYGCKHSLPDGICRATDVMLAGKRAVICGYGDVGKGCAFAMKAAGCIVTVTEVDPICALQAAMEGFAVKTLESQLADLDIVITTTGNKGIITCDSMSKMRDNAIVGNIGHFDNEIDMDGLMKA-TTRMNIKPQVDKFIFPNGMGPIVLAEGRLLNLGCATG 397
                 89***********************************************************************************************************************997.8999*******************************97 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.2   5.7e-11   1.1e-07      33     140 ..     256     360 ..     247     368 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 5.7e-11
                 .GGGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH---EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCCS-TT-EEEE---.GGGB-HHHHHHH CS
  PF02826.14  33 elsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelgaevvsleellaesDvvslhlpltpetrhlinaeelakmkkgailiNtaR.GglvdeeaLlea 140
                  l+gk+  i G+G +G+  a  +ka g+ v++++  +  + +++ +g+ v++le  la+ D+v+     t  ++++i+ ++++km+++ai+ N++   + +d + L++a
  MMETSP0890-20130614|1037_1 256 MLAGKRAVICGYGDVGKGCAFAMKAAGCIVTVTEVDPICALQAAMEGFAVKTLESQLADLDIVIT----TTGNKGIITCDSMSKMRDNAIVGNIGHfDNEIDMDGLMKA 360
                 589****************************9999988666999999****************97....5679********************9973344555555555 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.2e-06    0.0024       5      71 ..     257     325 ..     255     342 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.2e-06
                 -TT-EEEEE-------HHHHHHTT---EEEEE-SS--TT-T..............-TT--EEEEE--S-H CS
   PF13241.1   5 lkgkkvlvvGgGevAarkvrklleagakvtvvspeikeleelvk...laeeefeedlegadlviaatdde 71 
                 l gk+ ++ G G+v++  + ++ +ag+ vtv   +  ++  + +    a +++e+ l + d+vi+ t ++
  MMETSP0890-20130614|1037_1 257 LAGKRAVICGYGDVGKGCAFAMKAAGCIVTVTEVD-PICALQAAmegFAVKTLESQLADLDIVITTTGNK 325
                 789****************************8888.55554333123568889**************986 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   7.6e-07    0.0015       2      67 ..     257     321 ..     256     342 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7.6e-07
                 H----EEEE-------HHHHHHHH----EEE------HHHHHHHH---EE--HHHHHHT-SEEEE- CS
   PF07991.7   2 lkekkiaviGyGsqGhaqalnlrdsgldvvvglregsksvekakkdgfevltveeavkkadvvmil 67 
                 l +k+ ++ GyG  G+  a  ++  g+ v+v+  +    + +a  +gf v+t+e   ++ d+v+  
  MMETSP0890-20130614|1037_1 257 LAGKRAVICGYGDVGKGCAFAMKAAGCIVTVTEVDPI-CALQAAMEGFAVKTLESQLADLDIVITT 321
                 789999************************9988877.77788889**********9999999876 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9   1.7e-06    0.0033      27     109 ..     250     347 ..     238     385 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.7e-06
                 HHH--..--S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-.............ST---HHHHSSEEEE-------B-GGG-...----EEEE--- CS
  PF02882.14  27 lketgielegkkvvvvGrsnivgkplallLleknatVtvchskt.............kdlaeilreaDivvvavGkpelvkaemv...kegavviDvGi 109
                  ++t++ l+gk++v+ G ++ vgk  a+ +++++++Vtv++                k l++ l   Div++ +G++++++ + +   +++a+v ++G+
  MMETSP0890-20130614|1037_1 250 CRATDVMLAGKRAVICGYGD-VGKGCAFAMKAAGCIVTVTEVDPicalqaamegfavKTLESQLADLDIVITTTGNKGIITCDSMskmRDNAIVGNIGH 347
                 5678999**********987.9***************987754333344456666678999999****************9876533378899988886 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.8   1.1e+04      96     111 ..      57      72 ..      55      73 .. 0.74
   2 ?   13.3   0.1   2.7e-05     0.054       2      44 ..     263     305 ..     262     345 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5.8
                 ESSGGGHHHHHH---- CS
  PF02254.13  96 aqdeenakllkklgad 111
                 +q++  ++ lkklga+
  MMETSP0890-20130614|1037_1  57 IQTAVLIETLKKLGAN 72 
                 6677778888888886 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.7e-05
                 EEE---HHHHHHHCCCHH.--..EEEEES-HHHHHHHHH---EE CS
  PF02254.13   2 iiiGlGrvGrslaeeLre.gekdvvvidkdeerveelreeglev 44 
                 +i+G+G vG+  a ++++ g+  v+v + d+  + +++ eg+ v
  MMETSP0890-20130614|1037_1 263 VICGYGDVGKGCAFAMKAaGCI-VTVTEVDPICALQAAMEGFAV 305
                 8*****************7777.********8888888887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:02.00
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|1038_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.0   1.6      0.013   15.0   1.1    3.3  3  PF08597.5 Translation initiation factor eIF3 subunit


Domain annotation for each model (and alignments):
>> PF08597.5  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.1   9.2e-07     0.013      60     179 ..     180     297 ..     170     301 .. 0.76
   2 ?   -3.1  14.6      0.31   4.2e+03      43     111 ..     330     398 ..     318     426 .. 0.58
   3 ?   -2.3   0.1      0.17   2.3e+03      74     116 ..     494     537 ..     472     556 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.2e-07
   PF08597.5  60 kelkakieekekakkekkekekekkeeeldeedeaaekerlrkleeesDLknAadlfgglkkaltkdtdlesldlfnpktkedFeelrkalakkltkl..eksleYas.fledlirdllksLs 179
                 ++ +a ++e  ++ +ek+++e+e++++e++e  ++ +++++    +  +L++ ++ fg     ++++++++++d+  p   +d  + ++  +  +t+   ++s+eY +     ++rd+  + +
  MMETSP0890-20130614|1038_1 180 EAQEAYAAELRRQMEEKQQREAERRDQEVSEAKDRLRRLAMHDQRLSPELNK-NEHFG----FSNNSNQSQTHDTPSPLAYQDHHHHHNHQTGIITQSqlSQSPEYRDsARSRFVRDIYGETN 297
                 22222333334444444444444457899********************987.789**....78999***********************99999998779******9777889999976655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.31
   PF08597.5  43 eekekekakkaakakakkelkakieekekakkekkekekekkeeeldeedeaaekerlrkleeesDLkn 111
                 ++++++  +  +k++ +++++++ + k+++k+e++++e+++ +e +  e+ea+e++  + ++ ++D ++
  MMETSP0890-20130614|1038_1 330 ADAKRKALALTQKQALEAQIEERKQIKAREKAERQAEEERELREAMRLESEAKERKDAQIAKRQADEQK 398
                 3333333333444444444444444444444444555555558899****************9999554 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.17
   PF08597.5  74 kekkekekekkeeeldeedeaaekerlrkl.eeesDLknAadlf 116
                  ++++++ +++++    e++a+ k++ +   +ee D+++ +dl 
  MMETSP0890-20130614|1038_1 494 GKHQTSSSARRHHHHAVESPASIKALTQHYdQEEYDINSLSDLA 537
                 22222222223455666677777776666436667777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1695  (0.123976); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.58u 0.48s 00:00:02.06 Elapsed: 00:00:01.26
# Mc/sec: 1616.59
//
Query:       MMETSP0890-20130614|1039_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1251.43
//
Query:       MMETSP0890-20130614|1042_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-10   39.6   0.0    1.1e-09   38.1   0.0    1.8  1  PF10377.4 Autophagy-related protein 11
    1.8e-07   30.2   0.3    5.6e-07   28.5   0.0    1.9  2  PF04108.7 Autophagy protein Apg17


Domain annotation for each model (and alignments):
>> PF10377.4  Autophagy-related protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.6e-13   1.1e-09      34     127 ..     670     774 ..     654     776 .] 0.82

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.6e-13
   PF10377.4  34 qkekialknfkvgdlvlflptreqa..........ekkrpwaafnasaprYfLkeessaa...eelkt...rewavGrivsieecvvkedkddNpfklsrgtvwYrvkaa 127
                 ++ +i++ +++ gd++lf p r+++          ++   + af +++p+ fL   + +    +   +   +++++Gri+ +  ++v+   + Npf ls gt+++++++ 
  MMETSP0890-20130614|1042_1 670 SHPRISFCSLNIGDIALFTPLRDSEtyassdslkkKNRVDFLAFHRNCPNRFLARADVDLilrT---HdppPDFVLGRITCLRCFKVT--IEYNPFGLSLGTEFFELSVD 774
                 3339********************9777777776544445**************9999754333...1566****************8..9***************9886 PP

>> PF04108.7  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.11   7.5e+02      82     105 ..     220     240 ..     169     305 .. 0.55
   2 !   28.5   0.0   8.2e-11   5.6e-07     310     404 ..     409     510 ..     363     518 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.11
   PF04108.7  82 LdaadarLektlkvLrktkvelal 105
                 L     r e  l+ L+k+ ++ al
  MMETSP0890-20130614|1042_1 220 L---LMRFEGDLEALSKISMHPAL 240
                 2...33334444444444444444 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 8.2e-11
   PF04108.7 310 laifadieelleeeke.sieeyiselseLnefYdkFl......nsYkgLllEverrkavekkvekilkelnekLdklqeedverReqFlaeyGdYlPediwp 404
                 l ++ad ++++++  + ++ ++ ++l++  +++++        ++ ++L lE+ rr+a+    ++ ++ + e+L +l+ +++erR++F a +G  lP++++ 
  MMETSP0890-20130614|1042_1 409 LRLIADLQSRIHRVRIhHLATQADALQDKARLFTQLQtvrklpQAHEALCLEIGRRRAYLRASNSKVRACAEQLAQLRLQETERRANFHASHGACLPKTLLK 510
                 555555555555555544444445555555554443311111167889***********9999999*********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.11u 0.41s 00:00:01.52 Elapsed: 00:00:00.88
# Mc/sec: 2113.15
//
Query:       MMETSP0890-20130614|1044_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 812.10
//
Query:       MMETSP0890-20130614|1043_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-17   61.7   0.2    1.1e-16   61.0   0.1    1.3  1  PF00106.20 short chain dehydrogenase
    5.3e-07   29.3   0.3    9.2e-07   28.5   0.2    1.3  1  PF08659.5  KR domain
    9.9e-05   22.2   0.1    0.00018   21.4   0.1    1.6  1  PF13460.1  NADH(P)-binding
    0.00011   21.9   0.1    0.00016   21.4   0.0    1.2  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
     0.0019   17.6   0.6     0.0042   16.5   0.1    1.8  2  PF00107.21 Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.85    9.4   0.0    2.4  2  PF07453.8  NUMOD1 domain
        0.3   11.3   1.6         14    6.0   0.0    2.9  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   5.8e-20   1.1e-16       1     138 [.      34     180 ..      34     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 5.8e-20
                 -EEEE---------HHHHHHHHHSSEEEEEEESS..SHHHHHHHHHHHHH--.-EEEEEE--TTSHHHHHHHHHHHH..HH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH........HH---EEEEEECHH CS
  PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrr.edapgaaeliaelealg.aevtvvacDvadrdalaallaeir..kalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld........adlgafvlfSSvag 138
                 +t+ iTG+++g Gl  A++++++gar+ +++ r+ ++a++a++ ++ +  +   +v ++ cD+++ ++++++ +++    ++  ld++ +nagv+  +  ++ t++ ++  ++++  + +ll + + +        ++ +++v+ SS a 
  MMETSP0890-20130614|1043_1  34 KTIAITGCTSGTGLVAAKTCAKKGARV-YMLNRSsSRAEAAEAEVRTILGDSsNKVSTINCDLQSFNSVREAAKQLLneTRANGLDVICNNAGVMALE--DKATEDGYDVQMQTNHLSHFLLNKEIFPsllkavelRGEARIVNHSSLAR 180
                 7999*******************7755.5555553555555555566664444*********9998888888888776667999***********955..8999************************9999888777*********985 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   4.7e-10   9.2e-07       3      95 ..      36     130 ..      35     145 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 4.7e-10
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS...---EEEE-------- CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaee..pplrGvvhaAgvlrda 95 
                   +tG + g Gl++a+  a++gar  +l   s+++++++++  + l +   +v+++++D+++ ++v+++ +++ +e+  + l+ + + Agv++ +
  MMETSP0890-20130614|1043_1  36 IAITGCTSGTGLVAAKTCAKKGARVYMLNRSSSRAEAAEAEVRTILGDSSNKVSTINCDLQSFNSVREAAKQLLNETraNGLDVICNNAGVMALE 130
                 569*******************98777766664555555555566778899*******************9998877678999999999998644 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   9.2e-08   0.00018       1      64 [.      36     101 ..      36     178 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 9.2e-08
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe.ssgvtivkkDlfdl.edlaealagvdvv 64 
                 Ia++G+t+ tG   +k  +++g  v+ l R+ s++++ +  v+++ +D +++ +++  +l+++  v
  MMETSP0890-20130614|1043_1  36 IAITGCTSGTGLVAAKTCAKKGARVYMLNRSSSRAEAaEAEVRTILGDSSNKvSTINCDLQSFNSV 101
                 9***********************************9999*********99866677777777666 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   8.4e-08   0.00016       6     121 ..      43     158 ..      40     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 8.4e-08
                 -----HHHHHHHH---EEEE---HH----...--------------..----TT-SGGHHHHHHHHHHH.-.--BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG CS
   PF13561.1   6 nsigwaiakalaeaGaevilttwvpaklk...kkvqelakelpadv..vplDvtseedvselaekvkedlg.gkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalp 121
                 ++ g+  ak +a++Ga+v + +++ ++ +    +v+++  +  ++v  + +D++s ++v e a+++ +++  + +D++ + +++++ e+      +++++g++  ++++ +s   l k + p
  MMETSP0890-20130614|1043_1  43 SGTGLVAAKTCAKKGARVYMLNRSSSRAEaaeAEVRTILGDSSNKVstINCDLQSFNSVREAAKQLLNETRaNGLDVICNNAGVMALED------KATEDGYDVQMQTNHLSHFLLNKEIFP 158
                 78999*****************999755401145556666656777889****************998865689999999888888633......578899999999999999988888877 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.2e-06    0.0042       1      70 [.      44     128 ..      44     135 .. 0.92
   2 ?   -3.2   0.0       2.6   5.1e+03      56      67 ..     236     247 ..     224     262 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.2e-06
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETTTS-...............HHHHHHHHTTT--BSEEEEET-.CT CS
  PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinskded...............fvkaireltggkgvdvviecvgaga 70 
                 G Gl a++ ++  Garv+   +s +++e a++   +   +s++                 ++k++ + t+ +g dv+++ +g+ a
  MMETSP0890-20130614|1043_1  44 GTGLVAAKTCAKKGARVYMLNRSSSRAEAAEAEVRTILGDSSNKVstincdlqsfnsvreAAKQLLNETRANGLDVICNNAGVMA 128
                 89******************************99999999988889**************99******************99654 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.6
                 T--BSEEEEET- CS
  PF00107.21  56 gkgvdvviecvg 67 
                 g+gv +v+ ++g
  MMETSP0890-20130614|1043_1 236 GTGVIAVCAAPG 247
                 333333333333 PP

>> PF07453.8  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00043      0.85      10      25 ..      92     107 ..      83     108 .. 0.81
   2 ?   -0.9   0.0      0.79   1.5e+03      14      23 ..     155     164 ..     144     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00043
   PF07453.8  10 tneiksFpSireAAky 25 
                 ++ + sF+S+reAAk 
  MMETSP0890-20130614|1043_1  92 NCDLQSFNSVREAAKQ 107
                 55689*********95 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.79
   PF07453.8  14 ksFpSireAA 23 
                  +FpS+ +A 
  MMETSP0890-20130614|1043_1 155 EIFPSLLKAV 164
                 69***99986 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0071        14      10      49 ..      45      84 ..      42     101 .. 0.88
   2 ?    3.2   0.0     0.052     1e+02      40      62 ..     102     124 ..      86     144 .. 0.79
   3 ?   -1.5   0.0       1.5   2.9e+03       6      26 ..     236     256 ..     236     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0071
                HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHH CS
  PF00070.22 10 iGlElAaalaklgkkVtvierrdrllraldeeiakilqkk 49
                +Gl +A + ak g++V+++ r++   +a ++e+++il ++
  MMETSP0890-20130614|1043_1 45 TGLVAAKTCAKKGARVYMLNRSSSRAEAAEAEVRTILGDS 84
                68999******************99999999999998776 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHTTEEEETTEE CS
  PF00070.22  40 eeiakilqkklekngievllntk 62 
                 +e+ak l ++ ++ng +v+ n+ 
  MMETSP0890-20130614|1043_1 102 REAAKQLLNETRANGLDVICNNA 124
                 5899***************9864 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.5
                 ---HHHHHHHHHHHHTTSEEE CS
  PF00070.22   6 GGGyiGlElAaalaklgkkVt 26 
                 G G+i++ +A  la+ + +Vt
  MMETSP0890-20130614|1043_1 236 GTGVIAVCAAPGLAATNLQVT 256
                 89*****99999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1174.21
//
Query:       MMETSP0890-20130614|1046_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.4    7.2   7.2        2.5    7.1   5.0    1.0  1  PF07808.8  RED-like protein N-terminal region


Domain annotation for each model (and alignments):
>> PF07808.8  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.0   0.00018       2.5     101     147 ..       2      48 ..       1      52 [. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00018
   PF07808.8 101 kkedeeeekkekvekskekslqaeeqklkekekeseskikfktelgk 147
                 k+e++eee+ +  ++ +e+s++++e++++ k++es++++ +k+++ +
  MMETSP0890-20130614|1046_1   2 KEEQKEEEFVMLQKEREEASMASKEEQQELKKEESHNEKDLKETMYQ 48 
                 45666677666666677888899999999999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2029  (0.148406); expected 273.4 (0.02)
Passed bias filter:                     1342  (0.0981568); expected 273.4 (0.02)
Passed Vit filter:                       172  (0.0125805); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.52s 00:00:00.94 Elapsed: 00:00:00.84
# Mc/sec: 154.05
//
Query:       MMETSP0890-20130614|1045_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-44  148.8   0.3    1.6e-16   59.5   0.0    3.3  3  PF00013.24 KH domain
    2.6e-26   90.6   4.0    7.1e-10   38.2   0.0    3.5  3  PF13014.1  KH domain
    3.3e-13   48.8   0.8    0.00027   20.3   0.1    3.3  3  PF07650.12 KH domain
      9e-08   31.5   1.4      0.018   14.5   0.0    3.4  3  PF13083.1  KH domain
  ------ inclusion threshold ------
        0.1   12.3   1.6        4.2    7.1   0.0    2.9  3  PF13184.1  NusA-like KH domain


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   4.6e-15   1.2e-11       2      57 ..      91     158 ..      90     159 .. 0.85
   2 !   42.1   0.0   1.6e-14   4.4e-11       2      57 ..     185     249 ..     184     250 .. 0.88
   3 !   59.5   0.0   5.8e-20   1.6e-16       3      58 .]     332     392 ..     330     392 .. 0.91

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 4.6e-15
                 CEEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S.............E.EEEEEESHHHHHHHHHH CS
  PF00013.24   2 arvkvpnskigriIGkgGsnIkeIeeetgakIdvpkd.............rdtvtisGdpesvekAkkl 57 
                 a++++pn k+g +IGkgG++I++I+e ++a+ d+ ++             r + t  Gd ++v  A ++
  MMETSP0890-20130614|1045_1  91 AKLLIPNTKVGIVIGKGGAMINHIRESSKASLDIAEPgqqnnnqsalpqeR-VLTFNGDFAAVYTAFQM 158
                 6899******************************44455666777777556.99999******999887 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 1.6e-14
                 CEEEEECCCCHHH---TTHHHHHHHHHHT-EEEE..--S........E.EEEEEESHHHHHHHHHH CS
  PF00013.24   2 arvkvpnskigriIGkgGsnIkeIeeetgakIdv..pkd........rdtvtisGdpesvekAkkl 57 
                 ++++vp++k g +IG+ G+ I++ ++++ga+++v  p+d        r ++ isG+ ++v +A +l
  MMETSP0890-20130614|1045_1 185 TTILVPRNKTGGLIGRSGASINRVRNDSGATVKVgaPEDmilsepdfR-KCLISGTLDQVMQAFAL 249
                 689*******************************98444777766555.*************9776 PP

  == domain 3    score: 59.5 bits;  conditional E-value: 5.8e-20
                 EEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S......E.EEEEEESHHHHHHHHHHH CS
  PF00013.24   3 rvkvpnskigriIGkgGsnIkeIeeetgakIdvpkd......rdtvtisGdpesvekAkkli 58 
                 +++vpn+ +g++IG+ G++I++I++ +gak+d+ ++      r  vt++G+pe+++ A+ li
  MMETSP0890-20130614|1045_1 332 QFQVPNESMGAVIGRAGATINQIRQMSGAKVDIAQSvpgmpmR-LVTVTGTPEQIQMAQYLI 392
                 799******************************6556766667.**************9987 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   6.5e-11   1.8e-07       1      39 [.      99     143 ..      99     147 .. 0.80
   2 !   21.9   0.0   3.2e-08   8.8e-05       2      28 ..     194     220 ..     193     238 .. 0.82
   3 !   38.2   0.0   2.6e-13   7.1e-10       3      43 .]     341     380 ..     339     380 .. 0.97

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6.5e-11
   PF13014.1   1 lvgliIGkgGetIkeIreetGakIrfpk......easpgsnerei 39 
                 +vg +IGkgG+ I++Ire + a+ ++++       +s+ ++er+ 
  MMETSP0890-20130614|1045_1  99 KVGIVIGKGGAMINHIRESSKASLDIAEpgqqnnNQSALPQERVL 143
                 699*************************76666655555555555 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3.2e-08
   PF13014.1   2 vgliIGkgGetIkeIreetGakIrfpk 28 
                 +g +IG++G++I++ r+++Ga +++  
  MMETSP0890-20130614|1045_1 194 TGGLIGRSGASINRVRNDSGATVKVGA 220
                 799*********************988 PP

  == domain 3    score: 38.2 bits;  conditional E-value: 2.6e-13
   PF13014.1   3 gliIGkgGetIkeIreetGakIrfpkeaspgsnereitIrG 43 
                 g++IG+ G+tI++Ir+ +Gak+++++ + pg   r +t++G
  MMETSP0890-20130614|1045_1 341 GAVIGRAGATINQIRQMSGAKVDIAQ-SVPGMPMRLVTVTG 380
                 99************************.99999********9 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   9.7e-08   0.00027      29      58 ..      93     122 ..      81     130 .. 0.85
   2 !    8.7   0.0    0.0004       1.1      27      58 ..     185     216 ..     162     224 .. 0.87
   3 !   16.3   0.0   1.8e-06    0.0048      31      59 ..     335     363 ..     329     377 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.7e-08
                 EEEEESCCCCC------HHHHHHHHHHHHC CS
  PF07650.12  29 iviresqpgivIGkgGsnikklgkelrkri 58 
                 + i + + givIGkgG++i+ +++  +  +
  MMETSP0890-20130614|1045_1  93 LLIPNTKVGIVIGKGGAMINHIRESSKASL 122
                 6677899****************9988776 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0004
                 EEEEEEESCCCCC------HHHHHHHHHHHHC CS
  PF07650.12  27 viiviresqpgivIGkgGsnikklgkelrkri 58 
                 ++i +  ++ g +IG+ G+ i++++++ +  +
  MMETSP0890-20130614|1045_1 185 TTILVPRNKTGGLIGRSGASINRVRNDSGATV 216
                 66777889999**************9998877 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.8e-06
                 EEESCCCCC------HHHHHHHHHHHHCH CS
  PF07650.12  31 iresqpgivIGkgGsnikklgkelrkrie 59 
                 + ++ +g vIG+ G++i++++++ + +++
  MMETSP0890-20130614|1045_1 335 VPNESMGAVIGRAGATINQIRQMSGAKVD 363
                 556789*****************999985 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   5.7e-05      0.16      27      55 ..      87     115 ..      66     116 .. 0.85
   2 ?    2.3   0.1     0.043   1.2e+02      33      51 ..     187     205 ..     182     209 .. 0.82
   3 !   14.5   0.0   6.6e-06     0.018      31      57 ..     331     357 ..     327     363 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.7e-05
   PF13083.1  27 nertinlnvdgedlGrlIGkrGktldALq 55 
                 ++ + +l +  +++G++IGk G +++ ++
  MMETSP0890-20130614|1045_1  87 RTIEAKLLIPNTKVGIVIGKGGAMINHIR 115
                 556677888999************99665 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.043
   PF13083.1  33 lnvdgedlGrlIGkrGktl 51 
                 + v  +++G lIG+ G  +
  MMETSP0890-20130614|1045_1 187 ILVPRNKTGGLIGRSGASI 205
                 6677899*********876 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 6.6e-06
   PF13083.1  31 inlnvdgedlGrlIGkrGktldALqyL 57 
                 ++++v  e +G +IG+ G t++ ++++
  MMETSP0890-20130614|1045_1 331 VQFQVPNESMGAVIGRAGATINQIRQM 357
                 789999****************99986 PP

>> PF13184.1  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.038     1e+02       6      34 ..      92     115 ..      89     122 .. 0.86
   2 ?   -0.8   0.1      0.46   1.2e+03       8      36 ..     188     211 ..     184     218 .. 0.74
   3 ?    7.1   0.0    0.0015       4.2      19      48 ..     340     368 ..     335     377 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.038
   PF13184.1   6 kvaVkshnpnvDpvgaivgkkgsrikais 34 
                 k+++ +++     vg  +gk+g+ i+ i 
  MMETSP0890-20130614|1045_1  92 KLLIPNTK-----VGIVIGKGGAMINHIR 115
                 77777888.....************9986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.46
   PF13184.1   8 aVkshnpnvDpvgaivgkkgsrikaisse 36 
                 +V  ++      g ++g++g+ i+ + ++
  MMETSP0890-20130614|1045_1 188 LVPRNK-----TGGLIGRSGASINRVRND 211
                 444445.....6999*******9999775 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0015
   PF13184.1  19 vgaivgkkgsrikaisseLngekidvvews 48 
                  ga +g+ g+ i++i +   g k+d+ + +
  MMETSP0890-20130614|1045_1 340 MGAVIGRAGATINQIRQMS-GAKVDIAQSV 368
                 79*************9987.******8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.79
# Mc/sec: 1480.28
//
Query:       MMETSP0890-20130614|1047_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       127  (0.00928906); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.52
# Mc/sec: 202.77
//
Query:       MMETSP0890-20130614|1049_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-07   29.0   1.5    7.2e-07   29.0   1.0    1.7  2  PF12171.3 Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   1.0   5.3e-11   7.2e-07       1      24 [.      53      76 ..      53      79 .. 0.96
   2 ?   -1.9   0.1      0.27   3.7e+03       9      19 ..      83      93 ..      83      93 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 5.3e-11
                --B-TTT--B-SSHHHHHHHTT-H CS
   PF12171.3  1 qfYCvaCdkyFksenqlknHlksK 24
                qfYCv  +++F+++++l++H+ks+
  MMETSP0890-20130614|1049_1 53 QFYCVETGRHFTDQHALDEHKKSR 76
                8**********************7 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.27
                -B-SSHHHHHH CS
   PF12171.3  9 kyFksenqlkn 19
                k +k e+q+ +
  MMETSP0890-20130614|1049_1 83 KELKEEKQYTQ 93
                66889999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 422.04
//
Query:       MMETSP0890-20130614|1050_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-16   59.8   0.0    3.5e-16   59.3   0.0    1.2  1  PF08241.7  Methyltransferase domain
      2e-09   37.6   0.0    3.2e-09   37.0   0.0    1.3  1  PF08242.7  Methyltransferase domain
    6.2e-09   35.5   0.1    7.3e-09   35.2   0.0    1.1  1  PF13847.1  Methyltransferase domain
    3.6e-08   33.1   0.0    5.2e-08   32.6   0.0    1.2  1  PF13489.1  Methyltransferase domain
    5.6e-08   33.2   0.0    8.1e-08   32.7   0.0    1.2  1  PF12847.2  Methyltransferase domain
    1.2e-05   25.5   0.0      2e-05   24.7   0.0    1.4  1  PF13649.1  Methyltransferase domain
    0.00016   21.0   0.0     0.0003   20.1   0.0    1.4  1  PF05175.9  Methyltransferase small domain
     0.0005   19.1   0.1     0.0007   18.6   0.1    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.021   14.2   0.0       0.35   10.1   0.0    2.2  2  PF01555.13 DNA methylase
       0.11   12.0   0.1        3.6    7.0   0.0    2.6  2  PF05148.10 Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   2.5e-19   3.5e-16       2      95 .]      46     148 ..      45     148 .. 0.97

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 2.5e-19
   PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle..lvvadaeelpfednsfDvvvssevlehl.......edpekalkeiaRvLkpgGllvi 95 
                  +GcG+ +++e + e    ++t++D+s  +++++ke++k+++ +  ++ ++++ l f+d+sfD++++  v+  +       ++++k+  e+ RvLkp+G+l+i
  MMETSP0890-20130614|1050_1  46 MAGCGNSRMTEDMIEDGYTSITNIDVSRVVIDQMKEKYKDKKDTfiYQIMNVCGLEFPDESFDAIIAKGVMDAIlcgegstANVAKMCMEASRVLKPNGVLFI 148
                 68**************99***********************999***************************9999*************************997 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   2.3e-12   3.2e-09       3      99 .]      47     146 ..      45     146 .. 0.92

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 2.3e-12
   PF08242.7   3 iGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl.......kdirevldnirklLkpgGvl 99 
                  GcG++++++ + e+    ++t +D+s+ +i++ kek +++++  + ++ +     +   + +sfD+++a +v+ ++       +++ ++  ++ ++Lkp+Gvl
  MMETSP0890-20130614|1050_1  47 AGCGNSRMTEDMIED-GYTSITNIDVSRVVIDQMKEKYKDKKDTFIYQIMNVCGLEF---PDESFDAIIAKGVMDAIlcgegstANVAKMCMEASRVLKPNGVL 146
                 6**************.999999********************999999999988744...335***************************************97 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   5.3e-12   7.3e-09       4     112 ..      41     152 ..      38     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 5.3e-12
   PF13847.1   4 gikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevl.......naladpqkvlkeiervlkpggrlivesps 112
                 +  +l +GCG+ +++  + e    g + ++ iD s   i  +ke+ ++++ + + +++ ++  le  ++ esfD +i+++v+          a+ +k+ +e++rvlkp+g+l+++s  
  MMETSP0890-20130614|1050_1  41 DDAILMAGCGNSRMTEDMIED---GYTsITNIDVSRVVIDQMKEKYKDKKDT-FIYQIMNVCGLE--FPdESFDAIIAKGVMdailcgeGSTANVAKMCMEASRVLKPNGVLFIVSYG 152
                 5667789************53...2235****************75555544.666667777788..99**********999999999878888889999*************99876 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.8e-11   5.2e-08      10     125 ..      31     159 ..      21     178 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 3.8e-11
   PF13489.1  10 adllerllarlkpggrvLDiGcGtGillellaengf.dvtgvDpspaaigk...akqaqksqfdeed.....aaepagkfdlivarevlehvp.......dpeellrqiaellkpgGylllstpnaslasde 125
                 +++ ++   + k++  +L  GcG+ +++e + e g+ ++t++D s++ i     +++ +k++f  +       ++p+++fd i+a  v+  +        +++++  ++ + lkp+G+l+++ +  ++ + +
  MMETSP0890-20130614|1050_1  31 SEIMSK---YIKRDDAILMAGCGNSRMTEDMIEDGYtSITNIDVSRVVIDQmkeKYKDKKDTFIYQImnvcgLEFPDESFDAIIAKGVMDAILcgegstaNVAKMCMEASRVLKPNGVLFIVSYGFPDNRLQ 159
                 444444...4588899999*****************88********99987887666666666444355666888*****************99999888899*******************9863322222 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   5.9e-11   8.1e-08       3     111 ..      42     150 ..      40     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 5.9e-11
   PF12847.2   3 krilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkg.l....tldallaldeprrvlealpkllkpggrlvies 111
                 + il  GcG+ +++  + +   g + ++ +D s+  +++++e+   +d+ + + ++  ++   l++ ++ fDa+++kg +    +++  +a   + +++ ++ + lkp+g+l+i s
  MMETSP0890-20130614|1050_1  42 DAILMAGCGNSRMTEDMIE--DGYTsITNIDVSRVVIDQMKEKY--KDKKDTFIYQIMNV-CGLEFPDEsFDAIIAKGvMdailCGEGSTAN--VAKMCMEASRVLKPNGVLFIVS 150
                 568999*************..55555******************..56666666666666.4456665569999999955666644434444..7778**************9976 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.5e-08     2e-05       1     101 []      44     144 ..      44     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.5e-08
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcaglsle.....hlspkqlealleeiarvlkpgG 101
                 il +GCG+ r ++ +++    g   +++ +D+s   +++ ke++++k+ ++ + ++ +  l+f++++fd+++  g  ++       s     +++ e++rvlkp+G
  MMETSP0890-20130614|1050_1  44 ILMAGCGNSRMTEDMIED---GY-TSITNIDVSRVVIDQMKEKYKDKKDTFIYQIMNVCGLEFPDESFDAIIAKGV-MDailcgEGSTANVAKMCMEASRVLKPNG 144
                 6889****9999999966...55.9*******************9988666678899999*************444.55444445677788888888888988887 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.2e-07    0.0003      21     141 ..      32     151 ..      21     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.2e-07
                 HHHHHHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-STTTT--.--BS-EEE--------..HHHHHHHHHHH---GGGB-----EEEEEE CS
   PF05175.9  21 elLletlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdlleeveekkfdlivsNPPfhagk..atelevaerliaeAkkhLkegGeLllVan 141
                 e++ ++++   ++ +l  GcG+  ++  + + + + ++t +D+++  ++  k++++++k +   +++   +le +++++fd+i+    + a    + +++ + +++ eA ++Lk++G L++V  
  MMETSP0890-20130614|1050_1  32 EIMSKYIKR--DDAILMAGCGNSRMTEDMIEDGYT-SITNIDVSRVVIDQMKEKYKDKKDTFiYQIMNVCGLE-FPDESFDAIIAKGVMDAILcgEGSTANVAKMCMEASRVLKPNGVLFIVSY 151
                 445555554..4459999*********99998777.8********************9988655555555555.556********9997776654557788899*****************975 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   5.1e-07    0.0007      47     167 ..      40     164 ..      26     175 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 5.1e-07
  PF01209.13  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvv.......tvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqaye 167
                 r   +l   +G + ++ ++ +       ++ +D++  ++++ ++k k++  + i +   n   L+f d+sfD +       ++  G   +++  k   ea rvlkp G l+++ +  + + l     e
  MMETSP0890-20130614|1050_1  40 RDDAILMAGCGNSRMTEDMIEDG--YTSITNIDVSRVVIDQMKEKYKDKKDTFI-YQIMNVCGLEFPDESFDAIiakgvmdAILCGEGSTANVAKMCMEASRVLKPNGVLFIVSYGFPDNRLQYLDNE 164
                 55566666677777776665543..3378999***********99999877655.66678899*********873333333356677789999******************99887776666555555 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1       0.1   1.4e+02      18      94 ..      10      86 ..       4     101 .. 0.61
   2 ?   10.1   0.0   0.00026      0.35      37     110 ..     131     204 ..     121     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.1
                ......GGGT-SS----HHHHHHHHHHHB-----EE.E---------HHHHHHHHH--.-EEEEEEEEE-------SS CS
  PF01555.13 18 ndeqyeeedsyeeyleflekvlkevrrvLkddgsif.iniddseikkelkaladeifggffllnvivwkkpnsmpesn 94
                +d+ y++  +  ++ ++  +  +++ +  k d+ i+   ++ s++++++++  + ++  ++  +++v+++++++++++
  MMETSP0890-20130614|1050_1 10 WDDRYNKDPEAFDWYQRYSGLSEIMSKYIKRDDAILmAGCGNSRMTEDMIEDGYTSIT-NIDVSRVVIDQMKEKYKDK 86
                5667777778888888888888888888887665551567888888744444444443.4444444444443333333 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00026
                 HHHHHHHHHB-----EEE---------HHHHHHHHH--.-EEEEEEEEE--..-----SS..S----EEEEEEEES CS
  PF01555.13  37 kvlkevrrvLkddgsifiniddseikkelkaladeifggffllnvivwkkp..nsmpesnkdrltsthEyilvfsk 110
                 k++ e+ rvLk++g++fi       +  ++  +d+++ ++++ ++ v k +   + +  n+    s+  yi+v++k
  MMETSP0890-20130614|1050_1 131 KMCMEASRVLKPNGVLFIVSYGFPDN--RLQYLDNEDYSWKVSTHTVPKPTvsAASGVANDTADASSVHYIYVCQK 204
                 567799*************7777776..777777776689999998886666423333333344555667777776 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.075     1e+02      61      90 ..      31      58 ..       4      80 .. 0.64
   2 ?    7.0   0.0    0.0026       3.6     126     157 ..     118     149 ..     102     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.075
  PF05148.10 61 dviirklkkkkdnlvvadlGcGeakiaeav 90
                 +i+ k  k++d +     GcG+++++e +
  MMETSP0890-20130614|1050_1 31 SEIMSKYIKRDDAI--LMAGCGNSRMTEDM 58
                44555555555544..44588888887654 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0026
  PF05148.10 126 avfclslmgtnladflkeanrvlkvGGllkva 157
                 a++c    + n+a++  ea rvlk+ G+l++ 
  MMETSP0890-20130614|1050_1 118 AILCGEGSTANVAKMCMEASRVLKPNGVLFIV 149
                 67777777899*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 705.59
//
Query:       MMETSP0890-20130614|1053_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-45  154.6   0.1    2.9e-45  154.2   0.1    1.0  1  PF02089.10 Palmitoyl protein thioesterase
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.091   12.1   0.0    1.8  2  PF00561.15 alpha/beta hydrolase fold
      0.083   12.1   2.5       0.18   11.0   1.7    1.5  1  PF03940.8  Male specific sperm protein


Domain annotation for each model (and alignments):
>> PF02089.10  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.1   6.4e-49   2.9e-45       6     269 ..      25     292 ..      21     300 .. 0.91

  Alignments for each domain:
  == domain 1    score: 154.2 bits;  conditional E-value: 6.4e-49
  PF02089.10   6 lplviwhgmgdsccnplsmgvikkmvekkipgiyvlsleigktlredvensfflnvnvqvttvcqilekdpklq..qgynaigfsqggqflravaqrcpsppmvtlisvggqhqgvfglprcp..gesshicdfirkslnagaysklvqerlvqaeywhdpiked..vyrnysifladinqergvnesykknlmalkkfvmvkflndsivdpvdsewfgfyrsgqaketiplqestlytedrlglkkmdkagklvflakegdhlqlskew 269
                 +p v+ hgmgdsc n   m  i  ++     g y   +  g t  +d  n +f++++++v++ +  +++d +l+  +  n++gfsqg  + r   q+  +pp+ +++sv g   gv g+p c   g    ic  i k     ay+k+ q+ l q +y+ dp + +   ++ ys +    n+  + n++yk n++ + +f+m+k l ds+v p + e +g y      + + ++++  y  d +glk++d+agk+ f + +gdhlq+s++ 
  MMETSP0890-20130614|1053_1  25 VPTVVAHGMGDSCFNR-GMKKITALIGET-LGSYSTCIPTGDTRIDDTMNGYFMDMDTNVDVFAAKIHNDINLNtsESINCVGFSQGNMLCRGYIQKYNNPPVRNFLSVHGTVSGVAGFPNCDpdGPMGPICKQIAKLCGDIAYTKATQNLLFQIDYFRDPYRVNttAFKTYSQLAQWNNEGNSYNQTYKDNFIQVERFIMIKALHDSMVFPNEGEHWGHYADDSLTQVLYMNQTDWYKLDLFGLKTVDQAGKIKFNSTDGDHLQFSDDQ 292
                 799**********996.799999988765.699*************************************999722578*******************************************63366789*******************************876522789999766666666899**********************************************************************************974 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.24   1.1e+03     176     192 ..      25      41 ..      23      54 .. 0.78
   2 ?   12.1   0.0     2e-05     0.091      44      80 ..      99     170 ..      77     292 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.24
                 SSEEEEECCTTSCCHHC CS
  PF00561.15 176 vptlvisgtdDplvpyk 192
                 vpt+v++g+ D++++  
  MMETSP0890-20130614|1053_1  25 VPTVVAHGMGDSCFNRG 41 
                 79**********99754 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2e-05
                 SSEEEEE-B---HHHHHHHHHCGG.GEEEEEEESB--..................................H CS
  PF00561.15  44 kkltlvGhSmGGmialayaaeypd.rvkamvllgtva..................................v 80 
                 +++++vG+S+G m+++ y ++y    v+++ ++                                       
  MMETSP0890-20130614|1053_1  99 ESINCVGFSQGNMLCRGYIQKYNNpPVRNFLSVHGTVsgvagfpncdpdgpmgpickqiaklcgdiaytkaT 170
                 459**********************99999865442225556666666666666666666666555555551 PP

>> PF03940.8  Male specific sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7     4e-05      0.18      26      47 ..     140     162 ..     131     163 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4e-05
   PF03940.8  26 G.PccGPcGpcGPccGtvekycG 47 
                 G P c P Gp GP c ++ k cG
  MMETSP0890-20130614|1053_1 140 GfPNCDPDGPMGPICKQIAKLCG 162
                 4489*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1019.30
//
Query:       MMETSP0890-20130614|1054_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-25   88.1   0.0    6.6e-25   87.4   0.0    1.4  1  PF03483.12 B3/4 domain
      1e-13   50.7   0.0    4.3e-12   45.5   0.0    2.5  2  PF03484.10 tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> PF03483.12  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0   9.7e-29   6.6e-25       2     173 ..     129     295 ..     128     296 .. 0.94

  Alignments for each domain:
  == domain 1    score: 87.4 bits;  conditional E-value: 9.7e-29
  PF03483.12   2 cpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgq.....PlhafDldkiqgdiv.vrlakegeklvtldgkerel.de...........................edlviadsekpv.slagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselc 173
                 +p ++++vlrgv+++ p                +n+++D+++++++++++     +++++Dld++++++  +  a++  ++v+l ++ ++l ++                           +++vi+d++k v sl++v++g +s+++ +Tknvf+e++a                          +d++k+++++d+++a++se+c
  MMETSP0890-20130614|1054_1 129 RPFVVCAVLRGVSFEDPK--------------IYNSFIDLQEKLHQNICRrrtlvAIGTHDLDTLKPPFLyKGDAPDAIEFVPLTENVNKLfKGkalmdhyrtspqvkhlkpyaniiagndVYPVIYDAQKTVlSLPPVINGRHSRIQPSTKNVFIECTA--------------------------TDETKANVVCDTVCAMFSEYC 295
                 677888888888887777..............8*********************************9887688899999******999999666******************************************************************..........................********************9 PP

>> PF03484.10  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.016   1.1e+02      38      56 ..      66      88 ..      25     100 .. 0.77
   2 !   45.5   0.0   6.3e-16   4.3e-12       6      70 .]     331     400 ..     326     400 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.016
  PF03484.10 38 n....dedslrvtvPsyRsDiqh 56
                     ++ ++r+ vP+ R+D++ 
  MMETSP0890-20130614|1054_1 66 LenlsKDVVYRIDVPANRYDLLC 88
                24465667789*********986 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 6.3e-16
  PF03484.10   6 ldlqkvsrilGi...elsddeiekiLkrlgfkvekn..dedslrvtvPsyRsDiqhevDliEEvarlyGy 70 
                  ++++++  +G+   +l +d+i ++  +++++      d++s++vtvP  RsDi+h vD+iE+va++yGy
  MMETSP0890-20130614|1054_1 331 ANIETIRGTIGLndeHLPTDQILELCAKMQLSPGTFtdDGTSIQVTVPCTRSDILHAVDIIEDVAIAYGY 400
                 566777777776666999999999999999874433449******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.21s 00:00:01.18 Elapsed: 00:00:01.06
# Mc/sec: 1460.42
//
Query:       MMETSP0890-20130614|1051_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-78  263.4   0.0    2.7e-78  263.2   0.0    1.0  1  PF00724.15 NADH:flavin oxidoreductase / NADH oxidase family
  ------ inclusion threshold ------
      0.035   13.3   0.0      0.077   12.1   0.0    1.6  1  PF01261.19 Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> PF00724.15  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.2   0.0     4e-82   2.7e-78       1     340 [.      13     350 ..      13     351 .. 0.90

  Alignments for each domain:
  == domain 1    score: 263.2 bits;  conditional E-value: 4e-82
                 GGGS-EEETTEEESSSEEE------TTCT---B-HCHHHHHHHHHHH----EEE-SEEESSTTS-TTTT-EE-SSGGGHHHHHHHHHHHHHTT-EEE-EEE-----S-CCCCCCEC..ECS-CSSSSSCTCC.....CTT--E.EE--HHHHHHHHHHHHHHHHHHHH----EEEEEE-TT-HHHHHHSTTT----S-----HHHHCHHHHHHHHHHHHH---TSEEEEEEES---STT---HHHHHHHHHHHHCCCCCEEEEETTSSSCCCTTT-SSTTCCCCH--HHHHHCHHH.HHSSBEEEESS-TTHHHHHHHHHHSTTSEEEESCHHHH-TTHHHHHHHHTGG CS
  PF00724.15   1 kLFkPikignltLknRivmapmtrlrasedgtvpedllveyysqRakggvtliiteavavspksggfenqpglyddeqveqwkklteavhengskvvvqlwhlGreakaeyredae..dgpsdpvaleasek.....vagnel.keltkeeIkeiikefveAAkrAveAgfDgVeihgahgYLldqFlspksNkrtDeyGGSlenRaRFllevveavkeavgedrpvglRlspdevvekgktlaetaqkiellkelgkrvkdgkrlalielaeprktkafsveveqevknaekikk.vvkipvitvGrindpevaaeiveegkadlvaigRefladPdlvkkvkegred 340
                 k+F+P k+g+l L+nR+v+a++tr r+     vp+d+ veyy+qRa  + +l+  ea++vsp ++g + +p ly++eq+++wkk+++avh +g+ +v qlwh Gr+ +  +++++    ++sd    +  +      ++ +e+ +++t +eI+ +i ++++A ++++eAgfDgVe+h+a+gYLldqFl+  +NkrtD yGGS+enR RF+ +v e+    +     vg+ lsp  +++++ +  ++ ++ ++l+e++k       la++++ +  + +  +       +++ +ikk + + pv++  +++ ++ a+e+v+ gka  v++gR+ l++Pd+v++++ g ++
  MMETSP0890-20130614|1051_1  13 KMFEPTKLGELSLRNRFVLASLTRGRSGPSR-VPNDANVEYYRQRAT-NFGLLLGEAASVSPMGEGWYDSPSLYTAEQMAGWKKVVDAVHGEGGLIVAQLWHIGRAGHTSFLPNNAqmLSASDIKIEGDGVYtadttKQPHEIpRSMTTDEIDSTILDYKNAVQNCKEAGFDGVELHCANGYLLDQFLQSSTNKRTDDYGGSVENRFRFIKRVFEEAIFPIFPPSRVGVKLSPNGKFNDMGSEDNVETFSYVLDEINKMG-----LAFVQVMIGLEFGYHEKCPA---MTLAEIKKhLPNTPVMANCGYTPET-AEEAVASGKAACVSFGRPTLSNPDMVDRLRDGIPL 350
                 68**************************996.**************9.9**********************************************************9999998887877777666665555555444444559************************************************************************9999988888**************99999999999999998765.....58999999777776666666...5555555506799********9999.******************************99875 PP

>> PF01261.19  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05     0.077       2      92 ..     174     279 ..     173     321 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
                 HHHHHTT--EEEEECHHHCGSTHC................CHHHHHHHHHHHHHT-EEEEEEEECTTTTTTGCTTCCSSH..HHHHHHHHHHHHHHHH---EEEEEE-S CS
  PF01261.19   2 eaaaeaGfdgvElfgdglvpvsel................deelrelrklldelglriasiefstrfayldederearde..ekavaalkraielAkrlGaplvvvhpG 92 
                 + ++eaGfdgvEl++ +++  ++                 + + r ++++ +e+ + i+   +++r +  +  +++ +d   e+ v+ +   ++  +++G  +v+v++G
  MMETSP0890-20130614|1051_1 174 QNCKEAGFDGVELHCANGYLLDQFlqsstnkrtddyggsvENRFRFIKRVFEEAIFPIF---PPSRVGVKLSPNGKFNDMgsEDNVETFSYVLDEINKMGLAFVQVMIG 279
                 6789***************9987788888888888888888888888888888777732...22222222222445555566667888888888888888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:01.08
# Mc/sec: 852.04
//
Query:       MMETSP0890-20130614|1055_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.6  13.7    1.2e-08   34.6   9.5    2.1  2  PF00170.16 bZIP transcription factor
      3e-06   26.8  14.3      3e-06   26.8   9.9    2.4  2  PF07716.10 Basic region leucine zipper
     0.0021   17.1   5.4     0.0036   16.4   3.7    1.4  1  PF12072.3  Domain of unknown function (DUF3552)
  ------ inclusion threshold ------
      0.018   14.3   1.1      0.035   13.3   0.8    1.5  1  PF03520.9  KCNQ voltage-gated potassium channel
      0.019   14.7   8.0      0.019   14.7   5.6    1.6  2  PF13863.1  Domain of unknown function (DUF4200)
      0.022   14.1   5.1      0.069   12.6   3.5    1.8  1  PF10224.4  Predicted coiled-coil protein (DUF2205)
       0.13   12.6   7.1       0.33   11.3   4.6    1.9  1  PF13600.1  N-terminal domain of unknown function (DUF4140)
       0.39   10.6  10.3       0.55   10.1   5.0    2.2  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.51    7.9   2.4       0.68    7.5   1.6    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.93    9.1   9.9       0.12   12.0   3.7    1.8  2  PF01920.15 Prefoldin subunit
        1.6    8.2   7.1          3    7.3   4.9    1.4  1  PF03962.10 Mnd1 family
        2.5    7.7  12.0        3.1    7.4   7.5    1.7  2  PF06625.6  Protein of unknown function (DUF1151)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.6     3e+03      41      58 ..      30      47 ..      21      52 .. 0.57
   2 !   34.6   9.5     1e-11   1.2e-08       3      61 ..     136     194 ..     134     197 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.6
                HH.......HHHHHHHHH CS
  PF00170.16 41 eNkaLkkeleelkkevak 58
                eN+   +++ el ++++k
  MMETSP0890-20130614|1055_1 30 ENEGESEKVAELADLSEK 47
                555555555555555554 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 1e-11
                 XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
  PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 + k e+r+ kNR AA r R+R+ +e++ L+++v+eLea+ ++L  +le  + + +kl++
  MMETSP0890-20130614|1055_1 136 QAKLEIRRFKNRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVHNQKLQA 194
                 679***************************************************99986 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6      0.98   1.1e+03      16      32 ..     121     137 ..     120     141 .. 0.75
   2 !   26.8   9.9   2.6e-09     3e-06       9      52 ..     142     186 ..     134     188 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.98
  PF07716.10  16 ArrsRekkkakeeelee 32 
                 +r+sR+k  + e e++ 
  MMETSP0890-20130614|1055_1 121 SRKSRKKVPKSESEIQA 137
                 69999998777777765 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 2.6e-09
  PF07716.10   9 Rr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                 Rr +Nr+AA r R+++ +++++l++rv+eLe++ ++L++++e+ e
  MMETSP0890-20130614|1055_1 142 RRfKNRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASE 186
                 677**************************************9976 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   3.7   3.2e-06    0.0036      35     111 ..     110     192 ..      78     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.2e-06
   PF12072.3  35 eAkkiieeA....kkeAeakkkealleakeeihkl..reelEkelkerrkelqrqEkRllqkeetLdrkeeslekkeekleek 111
                 +  + +++A    k   +  k e  ++ak ei++   r+ +E+  k+r +e++++ +R+++ e +L + e+ le  e + ++ 
  MMETSP0890-20130614|1055_1 110 DDASTVDDAsgsrKSRKKVPKSESEIQAKLEIRRFknRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVHNQKL 192
                 55555666644322233344779*********86511678999999999************************9999765554 PP

>> PF03520.9  KCNQ voltage-gated potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8     3e-05     0.035     123     174 ..     135     186 ..     120     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3e-05
   PF03520.9 123 LqrrlDqilGkgqskvdkkerskaaeeisllgRvvkvEkqvasiekkldlll 174
                 +q++l     k+ + +++  + +++e  sl  Rv  +E q++++e +l+   
  MMETSP0890-20130614|1055_1 135 IQAKLEIRRFKNRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASE 186
                 7788888888999999999999999***********************9764 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.6   8.7e+03      74      89 ..      32      47 ..      23      53 .. 0.57
   2 ?   14.7   5.6   1.7e-05     0.019      64     121 ..     142     199 ..     121     204 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 7.6
   PF13863.1 74 kekkekeeeikklkaq 89
                +   ek +e+++l+++
  MMETSP0890-20130614|1055_1 32 EGESEKVAELADLSEK 47
                4444555555555554 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.7e-05
   PF13863.1  64 raekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqkYeefLekvveas 121
                 r  k+ +++++++k ++ee ++lk+ ++el+a+ +kle++le ++++++ L+ ++ +s
  MMETSP0890-20130614|1055_1 142 RRFKNRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVHNQKLQAILSSS 199
                 5668889999*****************************************9998765 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.5   6.1e-05     0.069       3      50 ..     146     193 ..     144     195 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.1e-05
   PF10224.4   3 prreseeleklekeekqrlieqvleLqdsLedLseRveaVkeendKLe 50 
                 +r  +e + k   ee + l + v eL + L++L +R+ea +  n+KL+
  MMETSP0890-20130614|1055_1 146 NRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVHNQKLQ 193
                 5666778889999*********************************97 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.6   0.00029      0.33      54      99 ..     143     188 ..     127     193 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00029
   PF13600.1  54 svrrrdlqekdadaaseelaeleaelraledelarleaekealear 99 
                 ++++r + e+ ++ +see a+l++++++le++l +lea++ea e  
  MMETSP0890-20130614|1055_1 143 RFKNRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVH 188
                 5777777788999****************************98755 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.33   3.8e+02      23      56 ..      33      64 ..      23      71 .. 0.65
   2 ?   10.1   5.0   0.00048      0.55      40     100 ..     134     192 ..     108     198 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.33
                TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17 23 edkedvdelleldeerrelqveleelqaerNels 56
                +++e+v+el +l e+ r+l   + +l a++ e+s
  MMETSP0890-20130614|1055_1 33 GESEKVAELADLSEKSRSLA--TPQLLANQSEIS 64
                56677888888888877774..345555555555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHHHHHHHHHGGGTTT....HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  40 elqveleelqaerNelskeIgkakkkk..edaeeliaevkelkeelkaleaelkeleaelekl 100
                 e+q++le     r   +++ ++ ++k   e++++l+++v+el ++l +lea+l++ e   +kl
  MMETSP0890-20130614|1055_1 134 EIQAKLEI----RRFKNRQAAERMRKRrsEETASLKNRVQELEAQLHKLEARLEASEVHNQKL 192
                 33333333....3334444444444444589999******************99987766555 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.6    0.0006      0.68      34     109 ..     122     194 ..     107     246 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0006
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  34 deverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlre 109
                  +  +k+ k esei++ k+e+++ k+++ +++    +++ ee+ +l+++++e+e+ l +Le++l+  e +++ l+ 
  MMETSP0890-20130614|1055_1 122 RKSRKKVPKSESEIQA-KLEIRRFKNRQAAER--MRKRRSEETASLKNRVQELEAQLHKLEARLEASEVHNQKLQA 194
                 4455555555555543.333332222222222..346667778888888888888888888888888888777765 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.3     6e+03      89     103 ..     125     139 ..     121     141 .. 0.54
   2 ?   12.0   3.7    0.0001      0.12      60     103 ..     150     193 ..     146     194 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.3
                 HHHHHHHHHHHHC-- CS
  PF01920.15  89 ekeleelkeelykkl 103
                 +k++ + ++e+++kl
  MMETSP0890-20130614|1055_1 125 RKKVPKSESEIQAKL 139
                 455555555555554 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- CS
  PF01920.15  60 keevkeeLeerketlekeiktlekqleklekeleelkeelykkl 103
                  e ++++  e+ ++l+ ++++le ql+kle++le  + +++k++
  MMETSP0890-20130614|1055_1 150 AERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVHNQKLQ 193
                 57788889999*****************************9987 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.9    0.0026         3      75     132 ..     132     188 ..     114     200 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0026
  PF03962.10  75 kkeleelkqrikelqaeiekekkkreeteereelleelkeleeelkklkkeleklakl 132
                 ++e+ ++k +i + +++ ++e+++++ +ee ++l ++++ele +l+kl++ le+ + +
  MMETSP0890-20130614|1055_1 132 ESEI-QAKLEIRRFKNRQAAERMRKRRSEETASLKNRVQELEAQLHKLEARLEASEVH 188
                 2222.23344555555555555555555666666666666666666666666644433 PP

>> PF06625.6  Protein of unknown function (DUF1151)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.7   4.2e+03       9      28 ..      46      65 ..      39      67 .. 0.72
   2 ?    7.4   7.5    0.0027       3.1      42     104 ..     130     193 ..     122     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.7
   PF06625.6  9 tdsdelikPkkllnpvkesr 28
                  s  l++P+ l+n +  sr
  MMETSP0890-20130614|1055_1 46 EKSRSLATPQLLANQSEISR 65
                45777888998888877665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0027
   PF06625.6  42 krklvleqKpELqrvlekrkedqvlkeqkeeeeakk.lkselekellkraqkleelelekakek 104
                 k  + ++ K E++r  +++  ++++k++ ee+   k   +ele +l+k +++le+ e +++k +
  MMETSP0890-20130614|1055_1 130 KSESEIQAKLEIRRFKNRQAAERMRKRRSEETASLKnRVQELEAQLHKLEARLEASEVHNQKLQ 193
                 44566778888888888888888888888777665546789****************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1355  (0.0991077); expected 273.4 (0.02)
Passed bias filter:                      644  (0.0471036); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:01.32
# Mc/sec: 519.21
//
Query:       MMETSP0890-20130614|1057_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-43  146.5   0.0    1.8e-20   72.9   0.0    3.6  3  PF12796.2  Ankyrin repeats (3 copies)
    3.4e-42  141.9   0.2    9.2e-13   48.2   0.0    5.2  6  PF13637.1  Ankyrin repeats (many copies)
    5.1e-36  120.5   0.0    1.3e-06   27.8   0.0    6.5  7  PF00023.25 Ankyrin repeat
      2e-33  110.9   0.0    7.8e-06   25.5   0.0    7.1  7  PF13606.1  Ankyrin repeat
    4.2e-27   93.4   0.0    2.2e-08   33.9   0.0    5.4  5  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.3e-10   3.5e-07      32      86 ..      15      72 ..       9      75 .. 0.87
   2 !   72.9   0.0   6.7e-24   1.8e-20       3      85 ..      51     137 ..      49     141 .. 0.97
   3 !   53.8   0.0   6.1e-18   1.7e-14       2      78 ..     149     229 ..     148     235 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.3e-10
   PF12796.2 32 lAaeagnleivklLle....agadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86
                 A+  g+le vk L+e       dvna+  +g t+  +Av+ng l +vk+L+++ga+v+
  MMETSP0890-20130614|1057_1 15 TACYDGKLEEVKRLVEeptdEPLDVNAE-IHGGTAFAAAVQNGYLQIVKYLVDHGAEVD 72
                68999***********666444567886.7***************************98 PP

  == domain 2    score: 72.9 bits;  conditional E-value: 6.7e-24
   PF12796.2   3 lAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                  A++ng l++vk+L+++ga+vd+    g tp+++Aa +g ++iv +L+e+ga++++ + +gntp ++++++++l+++k+L ++g ++
  MMETSP0890-20130614|1057_1  51 AAVQNGYLQIVKYLVDHGAEVDRpihdGATPCFIAAYRGYIDIVLFLIEQGANLETPNSKGNTPFFICCQHCRLDIAKMLADRGVNL 137
                 69*********************************************************************************9987 PP

  == domain 3    score: 53.8 bits;  conditional E-value: 6.1e-18
   PF12796.2   2 hlAaengnlelvklLlekgadvdl...getpLhlAaeagnleivklLleaga.dvnakdkegntpLhlAvrnghlelvklL 78 
                 ++A++ gnl++vk+L + g ++++   g tp h A+ +g+l++v++L+ ++  ++ + d +g+tpL +A r+++ ++v +L
  MMETSP0890-20130614|1057_1 149 FFACQEGNLDVVKFLADRGVNMTRgknGITPFHMACYRGHLDVVQYLVTQKSmNPRSIDGHGRTPLEVARRAQRDDVVAFL 229
                 68**********************888888******************97644666666*******************998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.1e-07   0.00086       8      54 .]      16      65 ..      12      65 .. 0.92
   2 !   35.8   0.0   2.6e-12     7e-09       3      54 .]      47      98 ..      45      98 .. 0.92
   3 !   21.5   0.0   8.1e-08   0.00022      19      53 ..      96     130 ..      94     131 .. 0.94
   4 !   37.8   0.0   6.2e-13   1.7e-09       1      53 [.     111     163 ..     111     164 .. 0.97
   5 !   48.2   0.0   3.4e-16   9.2e-13       2      54 .]     145     196 ..     144     196 .. 0.96
   6 ?    1.7   0.0      0.13   3.5e+02       1      20 [.     210     229 ..     202     237 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.1e-07
   PF13637.1  8 aaisgrlelvklLlekgid.inrtdes..GntaLhiAalrgnieilklLl 54
                a+++g le vk L+e   d +  ++++  G ta+  A+++g+++i+k+L+
  MMETSP0890-20130614|1057_1 16 ACYDGKLEEVKRLVEEPTDePLDVNAEihGGTAFAAAVQNGYLQIVKYLV 65
                99************988888999998888*******************96 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 2.6e-12
   PF13637.1  3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54
                ta+  a++ g l++vk+L+++g++++r   +G t+  iAa+rg+i+i+ +L+
  MMETSP0890-20130614|1057_1 47 TAFAAAVQNGYLQIVKYLVDHGAEVDRPIHDGATPCFIAAYRGYIDIVLFLI 98
                555567779******************************************8 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 8.1e-08
   PF13637.1  19 lLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 +L+e+g+++   +++Gnt++ i++++ +++i+k+L
  MMETSP0890-20130614|1057_1  96 FLIEQGANLETPNSKGNTPFFICCQHCRLDIAKML 130
                 899*****9999**********************9 PP

  == domain 4    score: 37.8 bits;  conditional E-value: 6.2e-13
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 g+t+++ +++++rl+++k L ++g+++  ++e G t++ +A++ gn++++k+L
  MMETSP0890-20130614|1057_1 111 GNTPFFICCQHCRLDIAKMLADRGVNLEPINEAGSTPFFFACQEGNLDVVKFL 163
                 689***********************9999**********************9 PP

  == domain 5    score: 48.2 bits;  conditional E-value: 3.4e-16
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                  t+++ a++ g+l++vk+L ++g++  +t  ++G t++h A++rg+++++++L+
  MMETSP0890-20130614|1057_1 145 STPFFFACQEGNLDVVKFLADRGVN--MTrGKNGITPFHMACYRGHLDVVQYLV 196
                 699*********************7..999**********************96 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.13
   PF13637.1   1 gltaLhyaaisgrlelvklL 20 
                 g+t+L +a ++ r ++v++L
  MMETSP0890-20130614|1057_1 210 GRTPLEVARRAQRDDVVAFL 229
                 68999999999999999987 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   5.7e+03       9      23 ..      16      30 ..      15      34 .. 0.83
   2 !   21.8   0.0   3.6e-08   9.7e-05       2      29 ..      45      72 ..      44      74 .. 0.91
   3 !   26.1   0.0   1.6e-09   4.4e-06       1      29 [.      77     105 ..      77     109 .. 0.93
   4 !   16.1   0.0   2.4e-06    0.0066       2      28 ..     111     137 ..     110     142 .. 0.93
   5 !   18.2   0.0     5e-07    0.0014       2      28 ..     144     170 ..     143     172 .. 0.94
   6 !   27.8   0.0   4.7e-10   1.3e-06       1      24 [.     175     198 ..     175     200 .. 0.94
   7 ?    1.8   0.0      0.08   2.2e+02       1      21 [.     209     229 ..     209     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.1
                HHHTTHHHHHHHHHH CS
  PF00023.25  9 AalrgnlevvklLls 23
                A++ g le vk L++
  MMETSP0890-20130614|1057_1 16 ACYDGKLEEVKRLVE 30
                888899999999987 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 3.6e-08
                SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdln 29
                G T+   A+++g+l++vk+L+++GA+++
  MMETSP0890-20130614|1057_1 45 GGTAFAAAVQNGYLQIVKYLVDHGAEVD 72
                6688899******************997 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.6e-09
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdln 29 
                 dG TP  +Aa+rg++++v +L++qGA+l 
  MMETSP0890-20130614|1057_1  77 DGATPCFIAAYRGYIDIVLFLIEQGANLE 105
                 89*************************96 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 2.4e-06
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdl 28 
                 G+TP  +++++ +l+++k+L ++G +l
  MMETSP0890-20130614|1057_1 111 GNTPFFICCQHCRLDIAKMLADRGVNL 137
                 9***********************998 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 5e-07
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdl 28 
                 G TP   A++ gnl+vvk+L ++G + 
  MMETSP0890-20130614|1057_1 144 GSTPFFFACQEGNLDVVKFLADRGVNM 170
                 89**********************985 PP

  == domain 6    score: 27.8 bits;  conditional E-value: 4.7e-10
                 TSCBHHHHHHHTTHHHHHHHHHHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsq 24 
                 +G TP H+A++rg+l+vv++L+ q
  MMETSP0890-20130614|1057_1 175 NGITPFHMACYRGHLDVVQYLVTQ 198
                 7********************987 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.08
                 TSCBHHHHHHHTTHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklL 21 
                 +G+TPL +A +  + +vv +L
  MMETSP0890-20130614|1057_1 209 HGRTPLEVARRAQRDDVVAFL 229
                 79****999888888888776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0026         7       7      27 ..      14      34 ..      10      41 .. 0.81
   2 !   14.8   0.0   7.9e-06     0.022       2      29 ..      45      72 ..      44      73 .. 0.91
   3 !   15.3   0.0   5.6e-06     0.015       2      28 ..      78     104 ..      77     106 .. 0.90
   4 !   16.5   0.0   2.2e-06    0.0061       2      28 ..     111     137 ..     110     141 .. 0.94
   5 !   16.9   0.0   1.7e-06    0.0046       2      27 ..     144     169 ..     143     170 .. 0.92
   6 !   25.5   0.0   2.8e-09   7.8e-06       1      22 [.     175     196 ..     175     204 .. 0.90
   7 ?    5.2   0.0      0.01        29       1      21 [.     209     229 ..     209     235 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0026
   PF13606.1  7 hlAasngrielveaLlengad 27
                ++A++ g++e v+ L+e + d
  MMETSP0890-20130614|1057_1 14 YTACYDGKLEEVKRLVEEPTD 34
                68**************97654 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 7.9e-06
   PF13606.1  2 GnTpLhlAasngrielveaLlengadin 29
                G T++  A++ng +++v++L+++ga ++
  MMETSP0890-20130614|1057_1 45 GGTAFAAAVQNGYLQIVKYLVDHGAEVD 72
                7799999******************885 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 5.6e-06
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G Tp ++Aa++g i++v +L+e ga++
  MMETSP0890-20130614|1057_1  78 GATPCFIAAYRGYIDIVLFLIEQGANL 104
                 778889*******************98 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 2.2e-06
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 GnTp+++ ++++r+++++ L ++g+++
  MMETSP0890-20130614|1057_1 111 GNTPFFICCQHCRLDIAKMLADRGVNL 137
                 9***********************985 PP

  == domain 5    score: 16.9 bits;  conditional E-value: 1.7e-06
   PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                 G Tp++ A++ g++++v++L ++g++
  MMETSP0890-20130614|1057_1 144 GSTPFFFACQEGNLDVVKFLADRGVN 169
                 78*******************99975 PP

  == domain 6    score: 25.5 bits;  conditional E-value: 2.8e-09
   PF13606.1   1 nGnTpLhlAasngrielveaLl 22 
                 nG Tp+h+A+++g++++v++L+
  MMETSP0890-20130614|1057_1 175 NGITPFHMACYRGHLDVVQYLV 196
                 799******************8 PP

  == domain 7    score: 5.2 bits;  conditional E-value: 0.01
   PF13606.1   1 nGnTpLhlAasngrielveaL 21 
                 +G+TpL +A + +r ++v +L
  MMETSP0890-20130614|1057_1 209 HGRTPLEVARRAQRDDVVAFL 229
                 69************9999885 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.025        69      21      40 ..      14      33 ..      13      42 .. 0.77
   2 !   15.4   0.0   5.4e-06     0.015       6      50 ..      36      79 ..      32      82 .. 0.75
   3 !   21.3   0.0   7.3e-08    0.0002      16      54 ..      78     116 ..      71     118 .. 0.91
   4 !   14.9   0.0   7.5e-06     0.021       1      42 [.     130     170 ..     130     175 .. 0.79
   5 !   33.9   0.0     8e-12   2.2e-08      12      56 .]     172     217 ..     168     217 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.025
   PF13857.1 21 hlAakggalevvrlLlapga 40
                ++A++ g le v+ L++ + 
  MMETSP0890-20130614|1057_1 14 YTACYDGKLEEVKRLVEEPT 33
                58**************4443 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.4e-06
   PF13857.1  6 padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgl 50
                p+dvna+  +g t++  A+ +g+l++v++L+++ga  +    dg 
  MMETSP0890-20130614|1057_1 36 PLDVNAE-IHGGTAFAAAVQNGYLQIVKYLVDHGAEVDRPIHDGA 79
                5566554.5555*******************99987766555555 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 7.3e-08
   PF13857.1  16 gntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                 g tp  +Aa++g+ ++v +L+++ga+l + +s g+t++ 
  MMETSP0890-20130614|1057_1  78 GATPCFIAAYRGYIDIVLFLIEQGANLETPNSKGNTPFF 116
                 4599999******************************86 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 7.5e-06
   PF13857.1   1 Llehg.padvnatdeggntpLhlAakggalevvrlLlapgadl 42 
                 L+++g ++ +   +e+g+tp+ +A+  g+l+vv++L ++g++ 
  MMETSP0890-20130614|1057_1 130 LADRGvNLEP--INEAGSTPFFFACQEGNLDVVKFLADRGVNM 170
                 5667744444..467788*******************888875 PP

  == domain 5    score: 33.9 bits;  conditional E-value: 8e-12
   PF13857.1  12 tdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                 + ++g tp+h+A+++g+l+vv++L+ ++  +++  d +g+t+l++A
  MMETSP0890-20130614|1057_1 172 RGKNGITPFHMACYRGHLDVVQYLVtQKSMNPRSIDGHGRTPLEVA 217
                 556677**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.87
# Mc/sec: 727.17
//
Query:       MMETSP0890-20130614|1059_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-19   67.0   0.0    9.2e-19   66.7   0.0    1.1  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
    6.6e-07   28.4   0.1    8.3e-07   28.1   0.0    1.1  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.4e-22   9.2e-19       2      71 ..      17      85 ..      16      86 .. 0.96

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.4e-22
                EEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE CS
   PF11976.3  2 kivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvv 71
                 + +++++g+e ++kVk++t+l+k+ +ay+++kg+++ +++r++ DG r +p++t+ +ld+ed+d++d +
  MMETSP0890-20130614|1059_1 17 SVCIRDQTGEETFFKVKKTTKLEKVFNAYAERKGVNS-SSLRFLLDGVRVRPEQTPTELDMEDNDQLDCM 85
                57899********************************.******************************87 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.2e-10   8.3e-07       4      68 ..      24      88 ..      20      89 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.2e-10
                SSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESS CS
  PF00240.18  4 sgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrl 68
                +g ++ ++v++++  +++ ++++e++g+  +++r++++G +   ++t +e++++d+++l ++l++
  MMETSP0890-20130614|1059_1 24 TGEETFFKVKKTTKLEKVFNAYAERKGVNSSSLRFLLDGVRVRPEQTPTELDMEDNDQLDCMLEQ 88
                455889*****************************************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.86
# Mc/sec: 261.93
//
Query:       MMETSP0890-20130614|1058_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-36  124.3   0.6    3.3e-36  123.0   0.4    1.7  1  PF01466.14 Skp1 family, dimerisation domain
    1.9e-34  116.6   0.8    3.3e-34  115.8   0.6    1.4  1  PF00240.18 Ubiquitin family
    3.6e-20   71.3   1.8    8.8e-20   70.0   0.6    2.0  2  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
      5e-17   61.5   0.1    1.3e-16   60.1   0.1    1.8  1  PF03931.10 Skp1 family, tetramerisation domain
    0.00081   19.0   0.2     0.0037   16.9   0.0    2.3  2  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
     0.0014   18.2   0.0     0.0027   17.3   0.0    1.4  1  PF13019.1  Telomere stability and silencing
     0.0039   17.2   0.4      0.012   15.6   0.2    1.8  1  PF10302.4  DUF2407 ubiquitin-like domain
      0.006   16.4   0.5       0.12   12.2   0.0    2.2  2  PF00651.26 BTB/POZ domain
  ------ inclusion threshold ------
      0.028   14.1   0.1      0.071   12.9   0.0    1.7  2  PF11470.3  GLUT4 regulating protein TUG
      0.083   11.6   1.0        3.6    6.2   0.1    2.1  2  PF04529.7  Herpesvirus U59 protein


Domain annotation for each model (and alignments):
>> PF01466.14  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.4   2.4e-39   3.3e-36       2      78 .]     183     259 ..     182     259 .. 0.98

  Alignments for each domain:
  == domain 1    score: 123.0 bits;  conditional E-value: 2.4e-39
  PF01466.14   2 kewDaeFlevdeetLfdlilAAnyLnikgLldlackkvAdmikgktpeeiRelfnIendftpeeeeeirkenewaee 78 
                 +ew a++++vd+e Lf+lilAAny++ik Lldl+c++vA+mikgktpeeiR++fnI ndftpeee+++r+en+w+ee
  MMETSP0890-20130614|1058_1 183 QEWYAKYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEE 259
                 79*************************************************************************96 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.6   2.4e-37   3.3e-34       1      69 []       6      74 ..       6      74 .. 0.99

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 2.4e-37
                EESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
  PF00240.18  1 ktlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69
                ktl+gktitl+vepsdt++++K+ki++kegip+dqqrLi++Gk+LeD+rtls+yniq++stlhlvlrlr
  MMETSP0890-20130614|1058_1  6 KTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                89*****************************************************************87 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.6   6.4e-23   8.8e-20       1      72 []       1      71 [.       1      71 [. 0.99
   2 ?   -0.8   0.0      0.82   1.1e+03       3      18 ..     100     115 ..      99     128 .. 0.69

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 6.4e-23
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
   PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+p++t+ +++++ ++k+gip+ +q+rLiF G++L++ +t+ d++i++++t+++v+
  MMETSP0890-20130614|1058_1  1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************996 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.82
                 EEEEESSS--EEEEEE CS
   PF11976.3   3 ivlkgkdgkevkikVk 18 
                 + l++++g++++++V+
  MMETSP0890-20130614|1058_1 100 VNLMSQEGDQFEVEVA 115
                 5688899997666664 PP

>> PF03931.10  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1   9.7e-20   1.3e-16       3      65 ..     100     162 ..      98     163 .. 0.95

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 9.7e-20
                 EEEEE----EEEEEHHHHCTSHHHHHHTCTTGGG--....CEEETTS-HHHHHHHHHHHHHCH CS
  PF03931.10   3 ikLtSsDgeefeverevakqsktikamledlgvddenerdpiplpnvtskiLekviewCkkhk 65 
                 + L+S+ g++feve +vak+s  +k+m+ +  ++d+ ++++iplpnv+s++L+kvie+C+ + 
  MMETSP0890-20130614|1058_1 100 VNLMSQEGDQFEVEVAVAKMSELVKTMIPEEADEDDDQAQEIPLPNVKSHVLSKVIEFCRQYV 162
                 789*******************************998899*******************9986 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.7e-06    0.0037      12      97 ..      10      81 ..       1     100 [. 0.72
   2 ?   -0.7   0.0      0.81   1.1e+03      20      51 ..     110     141 ..      96     188 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.7e-06
                --EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGGS--TTS-----EEEEEEE---SS----. CS
   PF13881.1 12 GkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkelrlplgevkggvtvmHvvvrealaekeee 97
                Gk +  + +++++t++++k+k+     ++ke  p  +++ +li aGk Led +tL++++++ +       ++H+v+r      ee+
  MMETSP0890-20130614|1058_1 10 GK-TITLDVEPSDTIDNVKQKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGADEEK 81
                55.5556678889999999998.....5677755..44559*****************665544......5899987655444444 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.81
                 E-TT-BHHHHHHHHHHHS-TT------SGGGE CS
   PF13881.1  20 fseattvaelkekvlaeWpkekeskpksandl 51 
                 f+ + +va++ e v    p+e+++   +a+++
  MMETSP0890-20130614|1058_1 110 FEVEVAVAKMSELVKTMIPEEADEDDDQAQEI 141
                 55566667776666666666666655555544 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     2e-06    0.0027       1      88 [.       1      76 [.       1      78 [. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2e-06
   PF13019.1  1 invlvssldglslpktlsltlpstatvsdlvdklserlpaslteslvLtttsnkqlssssdlslssllsssedaeflslrlslrlcGG 88
                ++++v++l+g    kt++l ++++ t++++ +k++++ ++++++++++  +  kql  ++  +ls++  ++e+    +l+l+lrl+GG
  MMETSP0890-20130614|1058_1  1 MQIFVKTLTG----KTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIF-A-GKQL--EDGRTLSDYNIQKES----TLHLVLRLRGG 76
                69********....9**************************99865443.3.4566..788889999888888....99********9 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   9.1e-06     0.012      14      78 ..      13      90 ..       3     109 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.1e-06
   PF10302.4 14 lrldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdlkee.................tafnakekgk 78
                ++ld++   s t+ + k+ i+++ +   +  + rlI+aGk L+d  +l++   ++                 ++  + e+g+
  MMETSP0890-20130614|1058_1 13 ITLDVE--PSDTIDNVKQKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYNIQKestlhlvlrlrggadeeKKPGEGEGGE 90
                456666..899***********9955544..4578*************9876666678888888888776542222223333 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     9e-05      0.12      28      93 ..     114     178 ..     100     183 .. 0.72
   2 ?    3.7   0.1     0.038        51      57     103 ..     171     216 ..     159     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9e-05
                 HHHHHH-HHHHHHTTTT.TTTT-SEEEEEETTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHH CS
  PF00651.26  28 avLaarSpyFkalftgg.eieestvseieledvepevfealLefiYtgeleitseenveelLaaadl 93 
                 + +a  S+  k++  ++  +++ + +ei+l++v+ +v+++++ef+    ++ +  +++e+ L+ a++
  MMETSP0890-20130614|1058_1 114 VAVAKMSELVKTMIPEEaDEDDDQAQEIPLPNVKSHVLSKVIEFCRQY-VNDP-MAEIEKPLKSANM 178
                 567999********9996334444459*****************9543.4443.5666666666665 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.038
                 TTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHH CS
  PF00651.26  57 edvepevfealLefiYtgeleitseenveelLaaadllqiprlkdac 103
                 +  +   ++++++  Y + ++++ +e + el+ aa++++i+ l d  
  MMETSP0890-20130614|1058_1 171 KPLKSANMHEVVQEWYAKYVDVD-QELLFELILAANYMDIKPLLDLT 216
                 667778889999999*******6.9****************998875 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.2e-05     0.071       5      65 .]       9      69 ..       5      69 .. 0.90
   2 ?   -3.3   0.0       5.6   7.7e+03      16      29 ..     175     188 ..     174     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.2e-05
   PF11470.3  5 nfrrvkvkvtpsttltqVleeackkfkldsneytLkhnnkpldlslpfRlanLpngakLeL 65
                ++++ ++ v+ps+t+  V ++   k ++ +++ +L + +k+l+   ++   n+   + L L
  MMETSP0890-20130614|1058_1  9 TGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69
                68999*************************************9888888888888877765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 5.6
   PF11470.3  16 sttltqVleeackk 29 
                 s+ +++V++e + k
  MMETSP0890-20130614|1058_1 175 SANMHEVVQEWYAK 188
                 66678888876555 PP

>> PF04529.7  Herpesvirus U59 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0026       3.6      10      44 ..     102     136 ..      98     144 .. 0.85
   2 ?    4.1   0.0     0.011        15     288     322 ..     164     197 ..     146     208 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0026
   PF04529.7  10 lvlddgtvleHelknadlseLvrrkiraprdadee 44 
                 l+ ++g   e e+  a++seLv+ +i+ + d+d++
  MMETSP0890-20130614|1058_1 102 LMSQEGDQFEVEVAVAKMSELVKTMIPEEADEDDD 136
                 566777778889999***************99998 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.011
   PF04529.7 288 eeLpaverRldendlivvalrryYreevdvkarvl 322
                 + + ++e+ l +   ++ +++++Y+++vdv ++ l
  MMETSP0890-20130614|1058_1 164 DPMAEIEKPLKSA-NMHEVVQEWYAKYVDVDQELL 197
                 5577788877655.58999***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       675  (0.049371); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:01.05
# Mc/sec: 593.38
//
Query:       MMETSP0890-20130614|1062_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   18.7   0.9     0.0056   17.4   0.6    1.6  1  PF12868.2 Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> PF12868.2  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.6   4.1e-07    0.0056      13     109 ..       5     107 ..       1     120 [. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.1e-07
   PF12868.2  13 aLaaaG.vGyAAhkysqrrerkkaekererkkeded.ysdsyeesydpapypasp....evdekryypesnyfppPpgsapvpppnaappYnPadYPppPgav 109
                 a a+aG vG AA+ ++ +++ ++  ++re++       ++  + + d + ++++      ++e + ++ s ++ppP +s p+ ++n + p  P   P  P+  
  MMETSP0890-20130614|1062_1   5 ARAVAGlVGSAAKTVELHEDAQRRAQQREHTLAAFHfWQERAQRQLDASLRMQQQqfatSMAELQARAASLQHPPPSASVPIYSKNSTSPSFPQHHPEEPSYL 107
                 6699**99*****999777777777777776666555677777777777777776677789999******************888888888899999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.60
# Mc/sec: 1242.11
//
Query:       MMETSP0890-20130614|1066_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-13   49.1   0.0    3.8e-13   49.0   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    5.3e-12   45.1   0.6    5.6e-06   25.9   0.2    2.0  2  PF13374.1  Tetratricopeptide repeat
    8.7e-06   25.0   0.0    0.00036   19.9   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.7e-05   24.0   0.7     0.0066   15.9   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    3.8e-05   23.1   0.1    0.00032   20.1   0.0    1.9  1  PF13414.1  TPR repeat
     0.0001   21.8   0.3      0.027   14.2   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.8   0.1       0.16   12.5   0.0    2.0  2  PF13428.1  Tetratricopeptide repeat
      0.057   13.5   1.2       0.17   12.0   0.1    2.1  2  PF13431.1  Tetratricopeptide repeat
      0.091   13.3   0.1       0.29   11.7   0.0    1.8  1  PF13432.1  Tetratricopeptide repeat
        0.1   12.2   0.2        4.2    7.2   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.8e-16   3.8e-13      24      72 ..       1      50 [.       1      51 [] 0.97

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.8e-16
   PF13424.1 24 Alelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
                A  l+e+a+e+  +++g++hp++a  lnnla l++++g++deA +++e+A
  MMETSP0890-20130614|1066_1  1 AKPLFERAIEIdEKTYGPNHPEVAADLNNLAGLLVEQGKNDEAMPLYERA 50
                7789*********************************************9 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-06    0.0017      21      42 .]       1      22 [.       1      22 [. 0.96
   2 !   25.9   0.2   4.1e-09   5.6e-06       1      28 [.      23      50 ..      23      51 .] 0.94

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.2e-06
   PF13374.1 21 AlaleeealairrrllGddHPd 42
                A +l+e+a +i ++ +G++HP+
  MMETSP0890-20130614|1066_1  1 AKPLFERAIEIDEKTYGPNHPE 22
                899******************6 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 4.1e-09
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
                +aa lnnLA +l ++g+ +eA +l+e+a
  MMETSP0890-20130614|1066_1 23 VAADLNNLAGLLVEQGKNDEAMPLYERA 50
                6788**********************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.049        67      21      31 ..       4      14 ..       1      22 [. 0.59
   2 !   19.9   0.0   2.6e-07   0.00036       2      24 ..      27      49 ..      27      51 .] 0.95

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.049
   PF13176.1 21 lyeraLaltkd 31
                l+era+++++ 
  MMETSP0890-20130614|1066_1  4 LFERAIEIDEK 14
                56665555544 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2.6e-07
   PF13176.1  2 llnLarlysrlgdyekAielyer 24
                l+nLa l +++g+ ++A  lyer
  MMETSP0890-20130614|1066_1 27 LNNLAGLLVEQGKNDEAMPLYER 49
                89********************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0028       3.8      20      32 ..       1      13 [.       1      14 [. 0.84
   2 !   15.9   0.1   4.8e-06    0.0066       4      27 ..      27      50 ..      24      51 .] 0.95

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0028
                HHHHHHHHHHHHT CS
  PF00515.23 20 AleyyekALelnP 32
                A   +e+A+e+++
  MMETSP0890-20130614|1066_1  1 AKPLFERAIEIDE 13
                6678*******97 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.8e-06
                HHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekA 27
                l+nl+ ++ ++gk deA   ye+A
  MMETSP0890-20130614|1066_1 27 LNNLAGLLVEQGKNDEAMPLYERA 50
                89*********************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.3e-07   0.00032      24      64 ..       3      50 ..       1      51 [] 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.3e-07
   PF13414.1 24 eayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekA 64
                 ++e+A+e+d     pn++e    ++nlA ++ ++gk+ +eA+  ye+A
  MMETSP0890-20130614|1066_1  3 PLFERAIEIDektygPNHPEvaaDLNNLAGLLVEQGKN-DEAMPLYERA 50
                67999999988888888888665678899999999976.8999999987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0064       8.8      20      32 ..       1      13 [.       1      15 [. 0.87
   2 !   14.2   0.1     2e-05     0.027       3      27 ..      26      50 ..      24      51 .] 0.93

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0064
                HHHHHHHHHHH-T CS
  PF07719.12 20 AleafekAleldP 32
                A+ +fe+A+e+d 
  MMETSP0890-20130614|1066_1  1 AKPLFERAIEIDE 13
                7789*******97 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2e-05
                HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekA 27
                 l+nl+ ++ ++g+ +eA  ++e+A
  MMETSP0890-20130614|1066_1 26 DLNNLAGLLVEQGKNDEAMPLYERA 50
                689*********************9 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.25   3.4e+02      20      32 ..       1      13 [.       1      28 [. 0.64
   2 ?   12.5   0.0   0.00012      0.16       4      27 ..      27      50 ..      23      51 .] 0.90

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.25
   PF13428.1 20 AiallrralalaP 32
                A  l++ra++ + 
  MMETSP0890-20130614|1066_1  1 AKPLFERAIEIDE 13
                5678999988653 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00012
   PF13428.1  4 llalarallalGdpdeAiallrra 27
                l  la +l ++G  deA+ l++ra
  MMETSP0890-20130614|1066_1 27 LNNLAGLLVEQGKNDEAMPLYERA 50
                6789******************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013      0.17       1      32 [.       4      43 ..       4      44 .. 0.84
   2 ?   -3.2   0.0         9   1.2e+04       1       5 [.      46      50 ..      46      50 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00013
   PF13431.1  1 lyekaleld.....Pnnadayn...nLAelllnnGdleeA 32
                l+e+a+e+d     Pn++++     nLA ll ++G+ +eA
  MMETSP0890-20130614|1066_1  4 LFERAIEIDektygPNHPEVAAdlnNLAGLLVEQGKNDEA 43
                699*****99999988866665555***********9998 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 9
   PF13431.1  1 lyeka 5 
                lye+a
  MMETSP0890-20130614|1066_1 46 LYERA 50
                68887 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021      0.29       3      23 ..      30      50 ..       1      51 [] 0.61

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00021
   PF13432.1  3 lArallraGdydeAlaaleaa 23
                lA +l+++G+ deA +++e+a
  MMETSP0890-20130614|1066_1 30 LAGLLVEQGKNDEAMPLYERA 50
                555666666666666666654 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.045        61      20      32 ..       1      13 [.       1      16 [. 0.80
   2 ?    7.2   0.0     0.003       4.2       4      27 ..      27      50 ..      23      51 .] 0.90

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.045
                HHHHHH---HHHH CS
   PF13181.1 20 Akeylekalelkp 32
                Ak  +e+a+e++ 
  MMETSP0890-20130614|1066_1  1 AKPLFERAIEIDE 13
                67789******97 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.003
                TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeyleka 27
                ++nl+ ++ + G+ d+A+  +e+a
  MMETSP0890-20130614|1066_1 27 LNNLAGLLVEQGKNDEAMPLYERA 50
                689999999************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.98
# Mc/sec: 124.71
//
Query:       MMETSP0890-20130614|1067_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-33  116.5   8.8    1.4e-33  116.1   6.1    1.1  1  PF01545.16 Cation efflux family


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   6.1     1e-37   1.4e-33       4     265 ..     137     401 ..     136     404 .. 0.91

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 1e-37
  PF01545.16   4 alllnlllalvelivglltnSlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliep......heidapeialgvalisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalre.ldgvlsvhdlhvwkvgsskilveihie.vdpslsvseahevaeeiekalk 265
                 ++++n+ll++v+l+ +++++Sla+la  + s++d++ +++++v+ ++as ppd+++p G++rle++g lv +vl+ ++ +f++++s ++l e              i+l++++i++l + +l+l+++      s++ss+  a a ++ +d+l++ ++++aa l+ +    ++ Dpi++++i+++i+ +++ +  e + +++g+ +++e+++ + + + +  ++ +++  + + ++g+  +lv +     +++ +vs +++ + ++  ++ 
  MMETSP0890-20130614|1067_1 137 SIVVNILLTIVKLWSAYVSGSLAVLASLVDSFLDLAQTFVLFVVEKKASLPPDTEYPAGRKRLEPVGVLVCAVLMGLGSFFVIFDSCKTLAEAfesgksPTLSIDAITLLILVITVLSKAILWLFCKA----VSEQSSTALALAEDHSNDVLSNFVAIIAAGLASWHAQLWWTDPIGAIIISIYIIRAWILIGSEHIEQIVGKGASDEQVKYIAALASAhDPDNYKLIGICAYHFGP-AFLVQLDMCiANDNTPVSAVYDTEMKLAAIIE 401
                 699******************************************************************************************9999966666666677779****************....777899999***********************99988889*******************************************9987999999************.66666666555888889888887776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.83
# Mc/sec: 1169.31
//
Query:       MMETSP0890-20130614|1068_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-68  227.5   0.9    5.9e-68  227.4   0.6    1.0  1  PF00025.16 ADP-ribosylation factor family
    3.3e-15   55.5   2.2    1.2e-09   37.2   0.2    2.2  2  PF00503.15 G-protein alpha subunit
    3.7e-15   55.4   0.0    5.1e-15   55.0   0.0    1.1  1  PF09439.5  Signal recognition particle receptor beta subunit
    1.3e-14   53.8   0.1    1.5e-14   53.5   0.1    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
    6.5e-14   51.5   0.0    7.6e-14   51.3   0.0    1.0  1  PF00071.17 Ras family
    8.4e-12   45.5   0.0    1.2e-11   45.0   0.0    1.2  1  PF08477.8  Miro-like protein
    1.7e-09   37.5   0.0    2.5e-09   36.9   0.0    1.3  1  PF01926.18 50S ribosome-binding GTPase
    5.1e-09   35.7   0.3    3.7e-07   29.6   0.0    2.0  2  PF00009.22 Elongation factor Tu GTP binding domain
     0.0002   22.0   0.0    0.00032   21.3   0.0    1.6  1  PF13207.1  AAA domain
    0.00058   19.2   0.2     0.0046   16.3   0.0    2.0  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0011   19.1   0.1     0.0018   18.4   0.1    1.5  1  PF13238.1  AAA domain
     0.0012   18.0   0.6      0.012   14.7   0.4    2.0  1  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.014   14.9   0.2      0.018   14.6   0.1    1.5  1  PF01637.13 Archaeal ATPase
      0.024   14.3   0.2        0.5   10.0   0.0    2.4  3  PF00350.18 Dynamin family
      0.029   14.3   0.0       0.15   11.9   0.0    2.0  2  PF13519.1  von Willebrand factor type A domain
      0.032   13.8   0.0      0.061   12.9   0.0    1.4  1  PF03266.10 NTPase
      0.036   13.4   0.6        1.8    7.8   0.1    2.2  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.038   14.1   0.4        3.3    7.9   0.0    2.3  2  PF05768.9  Glutaredoxin-like domain (DUF836)
      0.062   13.5   0.2       0.17   12.1   0.1    1.6  1  PF13191.1  AAA ATPase domain
      0.072   12.0   0.0       0.16   10.8   0.0    1.4  1  PF01591.13 6-phosphofructo-2-kinase
      0.083   12.6   0.2        0.2   11.4   0.2    1.8  1  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.6   9.1e-71   5.9e-68       2     174 ..       4     173 ..       3     174 .. 0.97

  Alignments for each domain:
  == domain 1    score: 227.4 bits;  conditional E-value: 9.1e-71
                 CCCHHCC--.TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHHH CS
  PF00025.16   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 l++l+klk +++e+ril+lGLDn+GKtTilkkl++e++++++PT+gfn+++l+  ++k++vwD+GGq+++Rp+W+nYf++tda+++vvDsad++Rlee+  eL++ll+ee+l+++++lv+aNKqDl +a + ++++e+l++    + r+++i++csa +gegl++g+ewl+e+
  MMETSP0890-20130614|1068_1   4 LNLLRKLKRSDNEARILVLGLDNSGKTTILKKLSEEDITHIMPTQGFNIKSLMQDGFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVVDSADSKRLEETTIELQQLLDEEKLQDIPVLVFANKQDLMNATDVDDIKEELKMC---AGRNWTIIGCSAKTGEGLQDGMEWLVEE 173
                 5789*************************************************************************************************************************************99875...578**********************986 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   9.7e-07   0.00063      50      78 ..       8      36 ..       5      40 .. 0.91
   2 !   37.2   0.2   1.9e-12   1.2e-09     200     306 ..      37     131 ..      35     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.7e-07
                XXXXXXXXEEEEEEEXXXXXXXHHHHHHH CS
  PF00503.15 50 eekkkkkkevklLlLGqgeSGKsTilkqf 78
                ++ k++++e ++L+LG + SGK+Tilk++
  MMETSP0890-20130614|1068_1  8 RKLKRSDNEARILVLGLDNSGKTTILKKL 36
                5689999********************86 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 1.9e-12
                 XHHHHHHXXXXXXXXEEEEEXX.XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEEGGGTTXBXSSXTTSBHHHHHHHHHHHHHTXGGGSSXEEEEEEEXHHHHH CS
  PF00503.15 200 tddDilrarlkttGiseikfevesktefrlvDvGGqrserkkWipcfedvdaiiFlvslsefdqvlyedesvnrleeSlklFksicnnkllkntpiiLflNKlDile 306
                 +++Di +  ++t G++  + +  ++ +++++D+GGq+s r  W ++f+++da++++v           +  ++rlee+    ++++ ++ l+++p+++f NK+D+++
  MMETSP0890-20130614|1068_1  37 SEEDITH-IMPTQGFNIKSLMQ-DGFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVVD----------SADSKRLEETTIELQQLLDEEKLQDIPVLVFANKQDLMN 131
                 5667655.45777777777755.99********************************9..........44558********************************97 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   7.8e-18   5.1e-15       3     138 ..      16     143 ..      14     152 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 7.8e-18
                 --EEEEE--TT---HHHHHHHHHSS-------SS-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHHHHHHHH CS
   PF09439.5   3 kpavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspklikdaLE 138
                 + ++l++Gl +sGKT+++++L+++ +++ +  q  ++   +  ++g+kl++ D+ G++++r    ++    ++  +lv+vvDS+ d+k+++e+   l ++l + +   + +++l+  nKq+l+ a     ik++L 
  MMETSP0890-20130614|1068_1  16 EARILVLGLDNSGKTTILKKLSEEDITHIMPTQGFNIKSLM--QDGFKLNVWDIGGQKSIRPYWRNY---FDQTDALVYVVDSA-DSKRLEETTIELQQLLDEEK--LQDIPVLVFANKQDLMNATDVDDIKEELK 143
                 6789********************99998888866665555..8*****************998887...678899******96.99999999998999887655..67899********************9985 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.1   2.4e-17   1.5e-14       1     137 [.      18     143 ..      18     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 2.4e-17
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesre.leedlekfqeileallqyspeakvfvlihKmDlisedereeifeerk 137
                 ++L++G  +sGKt+    i+++++ +d++++  T+  + ++++  + +kln+wD+gGq++ +  y+     + f + ++l+yV+D+  ++ lee+  ++q++l    +  +++ v v+ +K Dl++    ++i ee k
  MMETSP0890-20130614|1068_1  18 RILVLGLDNSGKTT----ILKKLSEEDITHIMPTQGFNIKSLM-QDGFKLNVWDIGGQKS-IRPYW----RNYFDQTDALVYVVDSADSKrLEETTIELQQLLDE--EKLQDIPVLVFANKQDLMNATDVDDIKEELK 143
                 69***********9....99*********************95.788***********66.56676....899************99554499999999999986..66789*************9988888887765 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.2e-16   7.6e-14       1     160 [.      18     174 ..      18     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 1.2e-16
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHST.TTSSEEEE---TTGGGG-SS-.HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvDleekravs.teegeelakelglkfletSAktnenveeafeellrei 160
                 +++++G  + GKt++l +  e++ + +  +T g++  +k+++ d    kl++wD  Gq   +   ++y+ ++++++ v d  +++ +e+ +  ++++ +  + +++p+++ +nK Dl +   v+  +e  +++   + + + +SAkt e++++ +e l++e+
  MMETSP0890-20130614|1068_1  18 RILVLGLDNSGKTTILKKLSEEDIT-HIMPTQGFN--IKSLMQD--GFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVVDSADSKRLEETTIELQQLLDEEKlQDIPVLVFANKQDLMNATDVDdIKEELKMCAGRNWTIIGCSAKTGEGLQDGMEWLVEEL 174
                 5899**************9999875.679999655..5666555..589*************************9999999999999999977777777766799**************99997357788999********************999999886 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.8e-14   1.2e-11       1     119 []      18     128 ..      18     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 1.8e-14
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 +++v+G  ++GK+++l++l +e +     +  + +++ ++k+l +d+ +  l++wd+gg++ +       + ++da + v+d++d + lee    l++l   +kl + ipv +++nk+D
  MMETSP0890-20130614|1068_1  18 RILVLGLDNSGKTTILKKLSEE-DI----THIMPTQGFNIKSLMQDGFK--LNVWDIGGQKSIRPYWRNYFDQTDALVYVVDSADSKRLEETTIELQQLLDEEKL-QDIPVLVFANKQD 128
                 899****************944.44....57788888888899999988..99*******9998888889*****************999977777777777764.66*********98 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   3.9e-12   2.5e-09       1     114 []      18     126 ..      18     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 3.9e-12
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETT.EEEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS..HHHHHHHHHHHHH....H.TCCCEEEEEEC CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkke.kiilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa..vlkeadkellnel....e.akkplilvlnk 114
                 ++ ++G+ N+GK+t++++L++e+++ +  ++g   +  ++    ++ k++++D+ G           ++i+ y+++  +++d+l++vvd+ +  +l+e+  el ++l    + +++p+++ +nk
  MMETSP0890-20130614|1068_1  18 RILVLGLDNSGKTTILKKLSEEDITHIMPTQGFNIKSlMQ----DGfKLNVWDIGG----------QKSIRPYWRNYfDQTDALVYVVDSADskRLEETTIEL-QQLldeeKlQDIPVLVFANK 126
                 5899****************87666666666665555333....232368******..........347999*****************55446444444444.23233323689999999997 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.027        17       5      26 ..      18      39 ..      14      49 .. 0.82
   2 !   29.6   0.0   5.7e-10   3.7e-07      67     186 ..      57     174 ..      41     176 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.027
                EEEEEESTT---HHHHHHHHHH CS
  PF00009.22  5 nigiighvDhGKtTltdallyk 26
                 i ++g  ++GKtT++++l  +
  MMETSP0890-20130614|1068_1 18 RILVLGLDNSGKTTILKKLSEE 39
                688899999*********9864 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 5.7e-10
                 ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-..S-HHHHHHHHHHHHTT--...EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHS CS
  PF00009.22  67 tkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqTeevlrlakklgvk...iivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivell 186
                 ++ +++n+ D  G ++      +   ++D+ v vvd+++    e+ T e+ +l+++++++   ++v+ NK D++  ++++ i+eelk  +       g ++ +++ +Sa++geg+++ +e +ve l
  MMETSP0890-20130614|1068_1  57 QDGFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVVDSADSkrLEETTIELQQLLDEEKLQdipVLVFANKQDLMnATDVDDIKEELK--M-----CAG-RNWTIIGCSAKTGEGLQDGMEWLVEEL 174
                 66677777777777777777777789************9988999999999999999887776999********7788888888888..2.....234.3688***********999998888876 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.9e-07   0.00032       1      78 [.      18      98 ..      18     175 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.9e-07
                EE--B--TT---HHHHHHHHHHSTEEE......EEGGGB-....-GGGS-.B-----B--SSGGGB-HHHHHHHH....H..HHHHHH....T CS
   PF13207.1  1 viaitGppGsGKsTlakeLaerlglpv......lslddll....reeglk.elddgereskdadadllaaildglaakkdtlswvidg....a 78
                +i++ G   sGK+T+ k+L+e+ ++ +      +++++l+    +   ++ + ++ +r ++       ++ +d+     d+l++v+d+     
  MMETSP0890-20130614|1068_1 18 RILVLGLDNSGKTTILKKLSEE-DITHimptqgFNIKSLMqdgfKLNVWDiGGQKSIRPYW-------RNYFDQT----DALVYVVDSadskR 98
                69999999**************.88883344444444432333333333322223333222.......2334433....67778888744431 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.1e-06    0.0046       3      40 ..      18      56 ..      16      59 .. 0.87
   2 ?    1.0   0.0      0.37   2.4e+02      94     137 ..     122     166 ..      86     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.1e-06
   PF10662.4  3 killiGkvgaGKTtLtqalkgeel.kykkTQaielseev 40
                +il++G  ++GKTt+ ++l++e++ +   TQ  ++++ +
  MMETSP0890-20130614|1068_1 18 RILVLGLDNSGKTTILKKLSEEDItHIMPTQGFNIKSLM 56
                89*********************9678899999988766 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.37
   PF10662.4  94 GiiTkidlaedeenielveelLka.aGae.kifevsavekegieel 137
                     k dl+ +  +++ ++e+Lk+ aG + +i+  sa + eg+++ 
  MMETSP0890-20130614|1068_1 122 VFANKQDLM-NATDVDDIKEELKMcAGRNwTIIGCSAKTGEGLQDG 166
                 455678888.788888888888873565436788899999998875 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.7e-06    0.0018       1      68 [.      19      96 ..      19     144 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.7e-06
   PF13238.1  1 IlitGtpGvGKtTlakeLaerl........gdvlrdlakengleeevddk...idtkeskeldedkldelldkleenes 68
                Il+ G   +GKtT++k+L+e+         g ++++l ++ g+   v d    +  +++++   d+ d+l+  +++ +s
  MMETSP0890-20130614|1068_1 19 ILVLGLDNSGKTTILKKLSEEDithimptqGFNIKSLMQD-GFKLNVWDIggqKSIRPYWRNYFDQTDALVYVVDSADS 96
                899999**************97677778875555555443.44444444334444555566666655555555555554 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.4   1.8e-05     0.012       2     162 ..      18     176 ..      17     183 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.8e-05
                 EEEEE--TT---HHHHHHH----.TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHHHH--SEEEEEEE...GGGHHHHHHHHHHHHHTT....-SEEEEEETHHHHHC---EB-HHHHHHH--..--EEEEBCCGTB--HHHHHHHHHHCTC CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgak.qkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardylleekpdviinvvD...asnlernLyLtlqllelg....vpvvvalnmiDeaekkgikidlkkLselLg..vpvvktvarkkkgieelleaiievaek 162
                 ++ ++G  n+GKtt++ +l++   +++   +G  +      ++ +g ++++ D+ G  s+ +y        +y+  ++ d+++ vvD   +++le + + + qll+ +    +pv+v  n+ D ++++ ++   ++L+   g    ++ ++a++++g+++ +e ++e  ++
  MMETSP0890-20130614|1068_1  18 RILVLGLDNSGKTTILKKLSEEDiTHIMPTQGFNIKS---LMQ-DGFKLNVWDIGGQKSIRPYWR------NYF--DQTDALVYVVDsadSKRLEETTIELQQLLDEEklqdIPVLVFANKQDLMNATDVDDIKEELKMCAGrnWTIIGCSAKTGEGLQDGMEWLVEELNS 176
                 68899**************997757787777776643...333.6899************99865......554..45555666655100566777766677888754333489999********9998876666666666533789**********99877777666555 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.8e-05     0.018       9      44 ..       5      40 ..       3     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.8e-05
                HHHHHHHHH..-SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13  9 keleeilerepnsiiviyGprrsGKTaLlkeileel 44
                + l+++ +++++  i+++G  +sGKT++lk++ ee 
  MMETSP0890-20130614|1068_1  5 NLLRKLKRSDNEARILVLGLDNSGKTTILKKLSEED 40
                566777777788889****************98875 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00077       0.5       1      26 [.      19      44 ..      19      49 .. 0.89
   2 ?    1.0   0.0      0.46     3e+02     123     159 ..      78     115 ..      68     126 .. 0.71
   3 ?   -0.2   0.0         1   6.7e+02     130     160 ..     117     148 ..     114     154 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00077
                EEEE--TT---HHHHHHH-------- CS
  PF00350.18  1 iavvGsqSaGKSSllnaLlgedilpr 26
                i+v+G  ++GK+++l+ L +edi ++
  MMETSP0890-20130614|1068_1 19 ILVLGLDNSGKTTILKKLSEEDITHI 44
                7899******************9876 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.46
                 HHHHSTTEEEEEEEETTS-ST.T-SHHHHHHHH----- CS
  PF00350.18 123 eeyikkadiilavtdanhdls.tsealflarevdpkgk 159
                 ++y ++ d++++v+d+ ++   + ++ +l++ +d+++ 
  MMETSP0890-20130614|1068_1  78 RNYFDQTDALVYVVDSADSKRlEETTIELQQLLDEEKL 115
                 57888999999999776644404466777777777665 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1
                 EEEEEEEETTS-STT-.SHHHHHHHH------ CS
  PF00350.18 130 diilavtdanhdlsts.ealflarevdpkgkr 160
                 di ++v++ ++dl ++ + +++++e+++   r
  MMETSP0890-20130614|1068_1 117 DIPVLVFANKQDLMNAtDVDDIKEELKMCAGR 148
                 77888999999999988999999999876655 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.15      91     162 ..       8      95 ..       2     105 .. 0.68
   2 ?    0.4   0.0      0.85   5.5e+02      74      97 ..     149     178 ..      94     183 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00024
   PF13519.1  91 ellakadgrraaivlvtD..Gedn......ssdie........aasalkragikiyvvgvgsdegaeallkelaeatggryfdassda 162
                 + l+++d  ++ +vl  D  G+ +      ++di+         +++l + g k++v  +g++++ +++ +++ ++t++ ++ ++s +
  MMETSP0890-20130614|1068_1   8 RKLKRSDNEARILVLGLDnsGKTTilkklsEEDIThimptqgfNIKSLMQDGFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVVDSAD 95 
                 4445454344444444463333335444444444455666667889************************************995433 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.85
   PF13519.1  74 l......mpgggtnlaaalalalellakad 97 
                 +      ++ +g+ l+++++  +e+l++++
  MMETSP0890-20130614|1068_1 149 NwtiigcSAKTGEGLQDGMEWLVEELNSSK 178
                 233344444566666666666666666665 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.4e-05     0.061       2      44 ..      19      61 ..      18      74 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.4e-05
                EEEE-------HHHHHHHHHH-...---EE--EEE-------- CS
  PF03266.10  2 vfiTGepgvGKtTlvkkvlellksegvkvgGfyteevreggrr 44
                +++ G   +GKtT++kk++e+   + ++ +Gf  +  +++g +
  MMETSP0890-20130614|1068_1 19 ILVLGLDNSGKTTILKKLSEEDITHIMPTQGFNIKSLMQDGFK 61
                677788899************99**************999976 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.04        26       7      22 ..      23      38 ..      17      53 .. 0.79
   2 ?    7.8   0.1    0.0027       1.8     113     170 ..      83     145 ..      71     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.04
                -------HHHHHHHHC CS
  PF02492.14  7 GflGsGKTtLleklle 22
                G   sGKTt+l+kl e
  MMETSP0890-20130614|1068_1 23 GLDNSGKTTILKKLSE 38
                55559*******9985 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0027
                 EE-EEEEEEETTTH.....CHHHHHHHHHHHHHCT-S.EEEEE-CCCTTTT..HHHHHHHHHHH CS
  PF02492.14 113 gldavvtvvdvknl.....tegedkpekledqlaaAd.livlnKiDlldaeadlekleedlrkl 170
                 + da+v+vvd++       t  e ++ + e++l+    l+  nK Dl++a+ d++ ++e+l+  
  MMETSP0890-20130614|1068_1  83 QTDALVYVVDSADSkrleeTTIELQQLLDEEKLQDIPvLVFANKQDLMNAT-DVDDIKEELKMC 145
                 57999****998776665544444444455555544415567********9.779999998865 PP

>> PF05768.9  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.005       3.3      25      77 ..      56     116 ..      50     117 .. 0.80
   2 ?    6.4   0.2     0.014       9.2      36      81 .]     104     143 ..      94     143 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.005
                 CT--SEEEEEETTTSCC...HHHHSSSS-SEEEE--...........-EEEESS--HHHHH CS
   PF05768.9  25 leeglelevidIdedev...learYgveipvlalvgvtktss.....leelswrvdeeqLa 77 
                  ++g++l v dI  +++    +++Y +++  l +v  +  s+     + el++ +dee+L+
  MMETSP0890-20130614|1068_1  56 MQDGFKLNVWDIGGQKSirpYWRNYFDQTDALVYVVDSADSKrleetTIELQQLLDEEKLQ 116
                 4788*********777779999999999999998874444447889989999999999987 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.014
                 TTTSCCHHHHSSSS-SEEEE--......-EEEESS--HHHHHHHHH CS
   PF05768.9  36 IdedevlearYgveipvlalvgvtktssleelswrvdeeqLaawle 81 
                 I+ ++ l ++  ++ipvl + +      ++ l+ + d ++++++l+
  MMETSP0890-20130614|1068_1 104 IELQQLLDEEKLQDIPVLVFAN------KQDLMNATDVDDIKEELK 143
                 55555566666689********......9*************9986 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00026      0.17      14      65 ..       5      53 ..       2     122 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00026
   PF13191.1 14 aalrrvsegsp..lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65
                ++lr+  ++     +lv+G   +GK+++l++     l e+   +   +  ++  
  MMETSP0890-20130614|1068_1  5 NLLRKLKRSDNeaRILVLGLDNSGKTTILKK-----LSEEDITHIMPTQGFNIK 53
                55555333333348*****************.....665555555444444444 PP

>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025      0.16      10      51 ..      13      54 ..       7      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00025
  PF01591.13 10 knsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgk 51
                ++++  i+++GL   gKt+i kkl+    +  ++t+ Fn+  
  MMETSP0890-20130614|1068_1 13 SDNEARILVLGLDNSGKTTILKKLSEEDITHIMPTQGFNIKS 54
                5677889999****************9999999***999865 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2    0.0003       0.2       4      32 ..      18      44 ..      15     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0003
   PF13173.1  4 ilvitGpRrvGKttllkqlakellkeesi 32
                 +++ G  ++GKtt+lk+l +e +   +i
  MMETSP0890-20130614|1068_1 18 RILVLGLDNSGKTTILKKLSEEDI--THI 44
                57899**************98887..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 540.64
//
Query:       MMETSP0890-20130614|1064_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   28.1   0.0    3.3e-06   27.2   0.0    1.5  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
     0.0043   16.8   0.4     0.0073   16.1   0.2    1.3  1  PF05767.7  Poxvirus virion envelope protein A14
  ------ inclusion threshold ------
      0.029   14.3   0.2        0.1   12.5   0.1    1.9  1  PF04145.10 Ctr copper transporter family
      0.031   14.2   0.0      0.082   12.8   0.0    1.6  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
      0.091   12.4   0.0       0.16   11.6   0.0    1.4  1  PF00657.17 GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.2e-09   3.3e-06      90     179 .]       3      94 ..       1      94 [. 0.78

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.2e-09
   PF13472.1  90 nlaaildalreaapvllvgyppvlpadreppaaglrdaldaln....ealaeaAaaygvtyvdlaaafadhegwdkdlla..pdglHPnaaGyaai 179
                 +l +il+   ++  ++l+ +pp+  +d++     +  +   +n    +++ ++A+++++ +v+ +++f +  +w  d +   +dg+HPn +Gy+ai
  MMETSP0890-20130614|1064_1   3 DLIDILESMPQKPVIVLMVPPPYVWEDDKL----GPPEEHPVNfdvpRVIPDIAQERNLALVNNFELFGGFVNWNMDWYEipDDGIHPNGDGYEAI 94 
                 677888888888888888888777555543....33344434433449**********************999998866699************97 PP

>> PF05767.7  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.7e-06    0.0073      42      86 ..     517     561 ..     508     566 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-06
   PF05767.7  42 ktwralsiiaFilgivlllglllfsmygryCaasskvveeeRyns 86 
                   +  + i+ F   ++l+l +++++ y  +Ca+ ++v   +R+ s
  MMETSP0890-20130614|1064_1 517 ILFTGVLIVVFFAVMILILIIVFYTKYREKCAIDNQVYAINRLSS 561
                 4566778999***********************999999999865 PP

>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.7e-05       0.1      17      86 ..     509     593 ..     508     685 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.7e-05
  PF04145.10  17 ssWrittkgeyagsciaifllavlyegLkavrrklerklakrasrnskavksasrsaeaekskaeksak..................s 86 
                 +sW+ +++  + g++i++f++++++ ++ ++  k+++k a +++  + +  s+    e++ks +e+s+                    
  MMETSP0890-20130614|1064_1 509 RSWKDNSTILFTGVLIVVFFAVMILILIIVFYTKYREKCAIDNQVYAINRLSSF---EETKSGDEPSPTnfvtvvdppksemtrptsP 593
                 69***********************************99966544444443333...3333333333334556666555555544440 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     3e-05     0.082      56      90 ..     510     546 ..     487     560 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3e-05
   PF06024.7  56 ekaqatnill..isllavlcvlvllyviyYFvilrer 90 
                 +++ +  il+  + ++++++v++l+++i+++   re+
  MMETSP0890-20130614|1064_1 510 SWKDNSTILFtgVLIVVFFAVMILILIIVFYTKYREK 546
                 3334444444114567899***********9888875 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-05      0.16     176     233 ..      50      97 ..       2      98 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6e-05
                 HHH.....HHHHHCTEEEEEHHHHHHHCHHHGGGHHHTCCCSSTTSB-CCCHHHHHHH CS
  PF00657.17 176 klaeqlrkdlvkeanvkyvDiysifqeldglqnpenssylfwDgfHptekghkavaea 233
                 ++a        +e n+ +v++++ f       ++++   +  Dg+Hp+  g++a+ae 
  MMETSP0890-20130614|1064_1  50 DIA--------QERNLALVNNFELFGGFV--NWNMDWYEIPDDGIHPNGDGYEAIAEN 97 
                 444........456666666666666653..3333346699***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       810  (0.0592452); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:00.87
# Mc/sec: 2129.18
//
Query:       MMETSP0890-20130614|1070_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-16   58.5   0.0    2.3e-11   43.6   0.0    3.1  3  PF07162.6 Ciliary basal body-associated, B9 protein
  ------ inclusion threshold ------
      0.039   13.2   0.7       0.37   10.0   0.1    2.2  2  PF13567.1 Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PF07162.6  Ciliary basal body-associated, B9 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   6.8e-05      0.46       6      46 ..      68     121 ..      64     154 .. 0.74
   2 !   43.6   0.0   3.4e-15   2.3e-11      50     164 ..     181     331 ..     165     334 .. 0.84
   3 ?    0.3   0.0     0.069   4.7e+02     118     147 ..     379     408 ..     363     428 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.8e-05
   PF07162.6   6 GeiesAegfeed.nlfvryelvlgp.dwkllsges...........lsgvtqta 46 
                  ei++Aegfe+   l + ye++l+  +w++l++             + g+tq++
  MMETSP0890-20130614|1070_1  68 MEIVRAEGFEDAdWLSIDYEIHLPGhGWRALENDVlwtstiegdqmCTGTTQVS 121
                 59*******97648*********9968*98887777777777777877777753 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 3.4e-15
   PF07162.6  50 elknddvavfshpfdlelkttnpkg..........wPqLvvtvlsldsw.grerleGYgyvevPlkpgkheit........vplwrpvssslveklrsfflGgspeled.ksilas.................gldrfglktestGsVklrl 164
                 + kn++ a+f++p++l++      +           P+ +++v+s  ++ +r  +eGY+ + +P+++ +++ +        +++w+p   +l  +lr ff+Gg++ l d +s +                     ++ +l+te tG++ lr+
  MMETSP0890-20130614|1070_1 181 QDKNKAAAYFNYPIELKIARLYAMNdprdairpteIPRCYFQVWSRAAFsERYVVEGYAQYRLPTTDSTNQFNqdeegfifLDVWKP-IPNLRAQLRDFFVGGAARLIDmRSAAYPledqsshigrgvfrslaITSKLNLRTERTGTIVLRF 331
                 447899999******99765444445667999999**********7665167999***********99887553333444489****.*********************66655559***************999***************98 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.069
   PF07162.6 118 vssslveklrsfflGgspeledksilasgl 147
                 +s++++++lr+ f  ++ +l d++ l++ l
  MMETSP0890-20130614|1070_1 379 LSKKTIKSLREKFAQRTNNLTDHDALKDVL 408
                 467889999999999999999999998844 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.034   2.3e+02      87     113 ..      30      56 ..      11      65 .. 0.82
   2 ?   10.0   0.1   5.4e-05      0.37       4      65 ..     123     182 ..     120     203 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.034
   PF13567.1  87 tprvtgsgrrfvlkveqvsskgvskpv 113
                    v+++++rf+lk + v+ + +++p+
  MMETSP0890-20130614|1070_1  30 AENVNERYKRFQLKLQHVPLQIQTEPA 56 
                 567899999*********888888776 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 5.4e-05
   PF13567.1   4 illa.alaslplgllllalllalllllllflkrrkrrrlllllglllllaglylllrapqpss 65 
                 i +  +++   ++ +++++++al+l+++l     ++++l+l++g++l  ++++++ +++ ++ 
  MMETSP0890-20130614|1070_1 123 ICAKqNYNDDRTSTFIVIAVCALFLFGILA---GPSYSLFLIFGFFLTTLSYGAHPNLYYQQD 182
                 555566666677778888888888888887...888888888888888888887766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:01.17
# Mc/sec: 1116.25
//
Query:       MMETSP0890-20130614|1073_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-09   36.2   0.0    8.3e-09   35.7   0.0    1.2  1  PF00005.22 ABC transporter
    2.5e-08   34.1   0.1    3.3e-07   30.4   0.0    2.0  1  PF13304.1  AAA domain
    2.7e-07   29.9   0.1      0.011   14.8   0.0    2.1  2  PF02463.14 RecF/RecN/SMC N terminal domain
    9.8e-06   26.2   0.0    2.6e-05   24.8   0.0    1.9  1  PF13207.1  AAA domain
    0.00045   19.5   0.1     0.0009   18.6   0.1    1.4  1  PF13555.1  P-loop containing region of AAA domain
    0.00065   18.1   0.0     0.0008   17.8   0.0    1.1  1  PF13166.1  AAA domain
    0.00068   19.4   0.0    0.00097   18.9   0.0    1.4  1  PF13671.1  AAA domain
    0.00087   19.2   0.2      0.022   14.7   0.2    2.3  1  PF13401.1  AAA domain
     0.0011   18.2   0.0      0.002   17.4   0.0    1.4  1  PF13481.1  AAA domain
     0.0049   15.9   0.0     0.0093   15.0   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
     0.0064   16.6   0.0      0.017   15.3   0.0    1.8  2  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.012   14.2   0.0      0.017   13.8   0.0    1.1  1  PF03215.10 Rad17 cell cycle checkpoint protein
      0.016   15.3   0.1      0.038   14.2   0.1    1.5  1  PF13476.1  AAA domain
       0.02   14.7   0.0      0.032   14.0   0.0    1.3  1  PF13521.1  AAA domain
      0.021   14.8   0.1       0.21   11.6   0.1    2.2  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.037   13.1   0.1      0.075   12.1   0.1    1.3  1  PF12846.2  AAA-like domain
      0.049   12.9   0.0       0.26   10.5   0.0    1.9  2  PF00488.16 MutS domain V
      0.077   13.0   0.0       0.24   11.5   0.0    1.8  1  PF00910.17 RNA helicase
      0.091   12.5   0.0       0.35   10.6   0.0    2.1  1  PF13173.1  AAA domain
        0.1   12.2   0.0        2.4    7.7   0.0    2.2  2  PF07728.9  AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.2e-11   8.3e-09       1     116 [.      69     200 ..      69     202 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.2e-11
                 HHHHHHHTTSS-..-----EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--............-HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEEST CS
                 xxxxxxxxxxxx..xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelk..ptegeievd.ndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk............tdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEP 116
                 STL k+l+++     t+g+ +++ +d+ ++e  ++++  i   +q p + p     + l++  +ek+                + e ++ v++d+ +l+++   ++SgG+k+r ++ ++ + +p+l +LDE 
  MMETSP0890-20130614|1073_1  69 STLSKVLARHPAyeVTSGSATLHgKDILEMEAVDASRNGIFLAFQYPVELPGVGNSDFLRIMLNEKRkadgmneldpieFLGVAAEKCNLVKMDQsFLSRDVNAGFSGGEKKRNEILQMAMIEPTLAILDET 200
                 99******99774366*******6688666666666655***********99999999999988888999********999**************************************************5 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   4.9e-10   3.3e-07       2     303 .]      58     237 ..      57     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 4.9e-10
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllni....eislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvlld 303
                  +i GpNgsGKS+l k+l+                   +         + + ++ +e e  +  ++gi   + + ++  ++                                                                   +  +++ +l+  +++    e++++e+ +   +  +l                      k++++ l +d +  +                   S G+k+   +l + +  +   ++ ++DE ++gL+  +lr++ + +++l++ +  +++ TH   lld
  MMETSP0890-20130614|1073_1  58 HAIMGPNGSGKSTLSKVLARH-----------------PAYEVTSGSATLHGKDILEMEAVDASRNGIFLAFQYPVELPGV------------------------------------------------------------------GNSDFLRIMLNEKRKAdgmnELDPIEFLGVAAEKCNLV---------------------KMDQSFLSRDVNAGF-------------------SGGEKKRNEILQMAMIEP---TLAILDETDSGLDIDALRTISDGINSLRRPDNAFLVITHYQRLLD 237
                 69*****************99.................*******************************************..................................................................22222222221111112122222222222222222222.....................222222222222222...................*******99999999999...***************************************988876 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.3e-05     0.029      25      41 ..      56      72 ..      41      76 .. 0.84
   2 !   14.8   0.0   1.6e-05     0.011     137     203 ..     174     237 ..      93     252 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.3e-05
                SEEEE--------HHHH CS
                xxxxxxxxxxxxxxxxx RF
  PF02463.14 25 sftaivGpNGSGKsnvl 41
                ++ ai+GpNGSGKs + 
  MMETSP0890-20130614|1073_1 56 EVHAIMGPNGSGKSTLS 72
                5789**********885 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.6e-05
                 -----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BT.BEEEEE-S-HHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  PF02463.14 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkekskn.aQfivislreemle 203
                 +SgGek+   +   + + +++p  l +lDe d+ LD    + +++ +++ ++    f+vi++ +++l 
  MMETSP0890-20130614|1073_1 174 FSGGEKKRNEI---LQMAMIEP-TLAILDETDSGLDIDALRTISDGINSLRRPdNAFLVITHYQRLLD 237
                 68888886553...44555666.499**********************87765499******998876 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.8e-08   2.6e-05       3      35 ..      59     104 ..      57     248 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.8e-08
                 --B--TT---HHHHHHHHHHSTEEE......EEGGGB-.......- CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpv......lslddll.......r 35 
                 ai Gp GsGKsTl+k La++  ++v      l+ +d+l        
  MMETSP0890-20130614|1073_1  59 AIMGPNGSGKSTLSKVLARHPAYEVtsgsatLHGKDILemeavdaS 104
                 899*****************76665333333666663322333332 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.3e-06    0.0009      17      39 ..      50      71 ..      43      75 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.3e-06
   PF13555.1 17 veidpkgkntlltGasGsGKSTl 39
                ++i+ +g++ +++G++GsGKSTl
  MMETSP0890-20130614|1073_1 50 LTIK-AGEVHAIMGPNGSGKSTL 71
                5565.5779*************8 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0008      20      49 ..      59      82 ..      49     155 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.2e-06
   PF13166.1 20 lIYGrNGsGKtTlSrllrslelkeisekys 49
                 I G+NGsGK+TlS++l++       + y+
  MMETSP0890-20130614|1073_1 59 AIMGPNGSGKSTLSKVLARH------PAYE 82
                688**************994......3333 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.4e-06   0.00097       2      31 ..      58      87 ..      57     168 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.4e-06
   PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsqd 31
                  + G+ GsGKstl++ l++++ y++ s  
  MMETSP0890-20130614|1073_1 58 HAIMGPNGSGKSTLSKVLARHPAYEVTSGS 87
                5689***************99999987755 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   3.2e-05     0.022       8     113 ..      59     218 ..      52     238 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.2e-05
   PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaae...........................karvvfveapastspkellqkllsalglpakg...........................rltteellealqealrrrrt......................rlliiDEaqr.Lseealeelrslldd 113
                 ++ G+ G+GK+tl + lar    ++ +                                   ve+p  +++  l+ +l ++ + +  +                                              +                       l i+DE +  L  +al ++++  + 
  MMETSP0890-20130614|1073_1  59 AIMGPNGSGKSTLSKVLARHP-AYEVTSGsatlhgkdilemeavdasrngiflafqY----PVELPGVGNSDFLRIMLNEKRKADGMNeldpieflgvaaekcnlvkmdqsflsrD------------------VnagfsggekkrneilqmamiepTLAILDETDSgLDIDALRTISDGINS 218
                 799**************9964.33333336888877777777777766555533330....3444443322222333333222222224444444433222244442223333320..................1222222222444444444456567777777777777777777766665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06     0.002      18      65 ..      37      97 ..      22     113 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.9e-06
   PF13481.1 18 ppppldwlvkg...llprgsltllaGapgtGKStlalqlaaava..........tGepflg 65
                 ++ ++ ++kg    + +g++++++G+ g+GKStl   la + a          +G+++l 
  MMETSP0890-20130614|1073_1 37 VIEAEKQILKGldlTIKAGEVHAIMGPNGSGKSTLSKVLARHPAyevtsgsatlHGKDILE 97
                566677777776556789**********************999887776666666666555 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-05    0.0093      22      66 ..      41      86 ..      26     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.4e-05
                HHTT-HHHHHHCTT.SBEEEE-------HHHHHHH--------S-- CS
  PF03193.11 22 tkegleelaellkd.ktsvlvGqSGvGKSsLinallpeldlkvgev 66
                +k+ l+ l  ++k  ++ +++G+ G GKS+L ++l+ +   +v + 
  MMETSP0890-20130614|1073_1 41 EKQILKGLDLTIKAgEVHAIMGPNGSGKSTLSKVLARHPAYEVTSG 86
                4667777888888779*******************99887777655 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.4e-05     0.017       2      23 ..      59      89 ..      59     139 .. 0.80
   2 ?   -1.9   0.0       4.9   3.4e+03      50      85 ..     184     235 ..     154     247 .. 0.51

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.4e-05
   PF13238.1  2 litGtpGvGKtTlakeLaerl.........g 23
                +i G+ G+GK+Tl+k La++           
  MMETSP0890-20130614|1073_1 59 AIMGPNGSGKSTLSKVLARHPayevtsgsaT 89
                589***************9855544444441 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 4.9
   PF13238.1  50 eldedkldelldkleenes................elaegenviidghlael 85 
                 +l++ + +  l  l+e +s                 ++ ++  ++ +h + l
  MMETSP0890-20130614|1073_1 184 ILQMAMIEPTLAILDETDSgldidalrtisdginsLRRPDNAFLVITHYQRL 235
                 4444444444444444333333333332222333233344444555555555 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.5e-05     0.017      27      75 ..      37      85 ..      24     104 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-05
  PF03215.10 27 KikeveewlkadflesakkrillltGPsGcgKsTtvkvlskelgiklie 75
                 i++ ++ lk   l  +   +  + GP G+gKsT  kvl++   +++  
  MMETSP0890-20130614|1073_1 37 VIEAEKQILKGLDLTIKAGEVHAIMGPNGSGKSTLSKVLARHPAYEVTS 85
                46666777777777777778999******************99998865 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   5.6e-05     0.038      21      35 ..      57      71 ..      43      76 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.6e-05
   PF13476.1 21 ltlItGpNGsGKTTi 35
                + +I GpNGsGK+T+
  MMETSP0890-20130614|1073_1 57 VHAIMGPNGSGKSTL 71
                789***********8 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.6e-05     0.032       3      27 ..      59      84 ..      57     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.6e-05
   PF13521.1  3 vitGgpstGKTtlleaLaar.gypvv 27
                +i+G+ ++GK+tl + La++  y+v+
  MMETSP0890-20130614|1073_1 59 AIMGPNGSGKSTLSKVLARHpAYEVT 84
                89*****************9877765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00031      0.21       3      35 ..      60      96 ..      59     249 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00031
                EE-------HHHHHHHHHH....CTHEEEEEECCSSS CS
  PF00004.24  3 lyGppGtGKTllakavake....lgvefleisgsell 35
                ++Gp G GK++l k +a++    + +   ++ g+++l
  MMETSP0890-20130614|1073_1 60 IMGPNGSGKSTLSKVLARHpayeVTSGSATLHGKDIL 96
                58****************9544412222333333333 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011     0.075       5      25 ..      59      79 ..      57      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
   PF12846.2  5 lilGppGsGKSvllkklvlql 25
                +i Gp GsGKS+l k l+++ 
  MMETSP0890-20130614|1073_1 59 AIMGPNGSGKSTLSKVLARHP 79
                699*************98875 PP

>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00038      0.26      19      61 ..      31      73 ..       3      78 .. 0.79
   2 ?   -0.1   0.0      0.66   4.5e+02     115     170 ..     183     237 ..     169     248 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00038
                -CCCCCC.TTS----EEEEECTTSS.EEEEE--TT---HHHHH CS
  PF00488.16 19 HpvveavleeeefvaNdveleeeksrlllitGpNmgGKStylr 61
                H +  +v+e+e+ +   ++l+ +  +++ i GpN +GKSt+ +
  MMETSP0890-20130614|1073_1 31 HGLEAKVIEAEKQILKGLDLTIKAGEVHAIMGPNGSGKSTLSK 73
                55556667778888888899988899**************866 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.66
                 HHHCC--.TTSEEEEE-------ST---HHHHHHHHHHHHC.T-EEEEE-S-CCCCC CS
  PF00488.16 115 siLknat.eksLvilDElGRGtstydGlaialavlehllekvkaktlfatHyheltk 170
                 +iL+ a  e +L ilDE   G  +    +i+  +   l +      l+ tHy+ l +
  MMETSP0890-20130614|1073_1 183 EILQMAMiEPTLAILDETDSGLDIDALRTISDGIN-SLRR-PDNAFLVITHYQRLLD 237
                 67776652567889999888887766666766654.4554.3556688899998865 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00034      0.24       3      23 ..      60      80 ..      58      94 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00034
  PF00910.17  3 lyGpsgeGKStlakeLakall 23
                + Gp+g GKStl+k La++ +
  MMETSP0890-20130614|1073_1 60 IMGPNGSGKSTLSKVLARHPA 80
                79*************999755 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00052      0.35       3      27 ..      56      80 ..      54     239 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00052
   PF13173.1  3 kilvitGpRrvGKttllkqlakell 27
                ++ +i Gp ++GK+tl k la++  
  MMETSP0890-20130614|1073_1 56 EVHAIMGPNGSGKSTLSKVLARHPA 80
                6789************998887654 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0034       2.4       4      22 ..      60      78 ..      59      91 .. 0.88
   2 ?    1.9   0.0      0.22   1.5e+02      44      75 ..     167     201 ..     154     222 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0034
                EE------HHHHHHHGGGG CS
   PF07728.9  4 LvGppGtgKselaerlaea 22
                + Gp G+gKs+l++ la+ 
  MMETSP0890-20130614|1073_1 60 IMGPNGSGKSTLSKVLARH 78
                57************99986 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.22
                 -B--............--------G-SEEEEESGG CS
   PF07728.9  44 rreia...ngttslvdsplvraaregeilvlDEve 75 
                 +r+++   +g+++ ++ +l  a+ e+  ++lDE +
  MMETSP0890-20130614|1073_1 167 SRDVNagfSGGEKKRNEILQMAMIEPTLAILDETD 201
                 344445567999999999999************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.67
# Mc/sec: 972.85
//
Query:       MMETSP0890-20130614|1076_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-31  107.0   0.1    8.4e-31  106.7   0.1    1.1  1  PF13326.1 Photosystem II Pbs27


Domain annotation for each model (and alignments):
>> PF13326.1  Photosystem II Pbs27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.1   6.1e-35   8.4e-31      17     143 ..      62     194 ..      41     196 .. 0.82

  Alignments for each domain:
  == domain 1    score: 106.7 bits;  conditional E-value: 6.1e-35
                 XX...XXXX...X..XXX-...............---------HHHHHHHHHHHHHHHHCS-TT-TTHHHHHHHH---HHHHHCCTTT-------HHHHHHHHHHHHH---TTT----.S--HHHHHHHHHHHHHHHH CS
   PF13326.1  17 llsaegaalaera..laacea.........aksadpaealsgkYlkdtrevvktlreslelpkddaerrkaadeakesindyvskYrrggsvsgeaSfatletAlnsLaghYsknGpraplPeevkerilkelkkaee 143
                 l    +a+la+ra      ea           ++ ++   +++Y+ d+ +vv ++r +  l+k +++ ++ a e k+++n++v+ Yrr  +v+g++Sf+tl+tA+n LaghY+++Gp+ p+Pe++++r+ +e+++ e+
  MMETSP0890-20130614|1076_1  62 L---GVACLADRAvaD--DEAtpvappapvVAELPTNYGITQDYYTDAAKVVAHMRLATSLDKGSPNIEQIAIETKKEMNAFVAFYRRFTTVTGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYDEIEK 194
                 2...255665555332..2223344555533344555699999********************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 704.81
//
Query:       MMETSP0890-20130614|1077_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-56  190.2   0.0    1.6e-56  190.0   0.0    1.0  1  PF00071.17 Ras family
    3.2e-18   66.2   0.0    4.6e-18   65.7   0.0    1.2  1  PF08477.8  Miro-like protein
    2.3e-08   33.3   0.0      3e-08   32.9   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
     0.0025   17.1   0.0      0.026   13.8   0.0    2.0  2  PF00009.22 Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.0   4.5e-60   1.6e-56       1     160 [.      11     182 ..      11     184 .. 0.98

  Alignments for each domain:
  == domain 1    score: 190.0 bits;  conditional E-value: 4.5e-60
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHSTTTSSEEEE---TTGGG............G-SS-HHHHHHHHHHTT.EEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 K+v+vGd+avGKt+ll++++++ F+ ey++T+ +d+y+++++vdgk ++l +wDTAGqe++++lr+l+y +++++ll+++it+ +sfen++ kw+ ei+++a+ +vp++LvG+K Dl++            ++ v+ eege+la+elg +k++e+SA t+++++ +f++++r +
  MMETSP0890-20130614|1077_1  11 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSITNPTSFENIRtKWYPEINHHAP-GVPFILVGTKLDLRNdpdtiarlqqkrRQPVNSEEGEALARELGaYKYIECSALTQQGLKGVFDDAIRCV 182
                 89******************************.**********************************************************9***********.7************************99999**************99*******************99976 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   1.4e-21   4.6e-18       1     119 []      11     124 ..      11     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 1.4e-21
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 k+vvvGd  vGK+ ll ++++  fp    + ++  d+++   + vd++   l lwd++g+e+ ++  +l   ++d++ll +++t++ s+e+++   +w++e++  +  +p ilvg+klD
  MMETSP0890-20130614|1077_1  11 KCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSITNPTSFENIRT--KWYPEINHHAPGVPFILVGTKLD 124
                 89***********************..555555555555.35689999999**************77777*********************955..5********999*********98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   8.8e-12     3e-08       8     168 ..       3     175 ..       1     181 [. 0.80

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 8.8e-12
                 C--.TSEEEEEEE--TT---HHHHHHHHHS-EE.EE-S--S-EEE.EEEE..TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST..........SSSEEEEEEBTTTTB--HHHH CS
  PF00025.16   8 lklkkkelrilllGLDnaGKtTilkklkleelv.ttvPTigfnve.elei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelk.........gkrkleiqkcsavkgeglkegl 168
                 l+ k ++++++++G  + GKt +l  ++++ +  + +PT+  n   ++++  k +++ +wD  Gqe   +l    +++td+ + +   ++ + +e+ +++    ++++    v++++++ K Dl+++ ++    ++   + ++              + ++csa++++glk  +
  MMETSP0890-20130614|1077_1   3 LERKMQNIKCVVVGDGAVGKTCLLISYTTNAFPgEYIPTVFDNYSaNVMVdgKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSITNPTSFENIRTKWYPEINHH-APGVPFILVGTKLDLRNDPDTIARLQQKRRQPVNseegealarELGAYKYIECSALTQQGLKGVF 175
                 5567899*******9999************996269***988864255555599*************9999999**************************99999875.579************99877766555555555443333332233445677889999999988666 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.056   1.9e+02       3      21 ..       9      27 ..       7      37 .. 0.83
   2 !   13.8   0.0   7.5e-06     0.026      64     184 ..      53     180 ..      40     184 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.056
                EEEEEEEESTT---HHHHH CS
  PF00009.22  3 irnigiighvDhGKtTltd 21
                ++ ++++g+   GKt+l+ 
  MMETSP0890-20130614|1077_1  9 NIKCVVVGDGAVGKTCLLI 27
                6889************975 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.5e-06
                 ET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.S-HHHHHHHHHHHHT...T--EEEEEE-TTST.....CHHHHHHHHHHHHHHHHHCTTGCT......CGEEEEEE-STCCHHHHHHHHHHHH CS
  PF00009.22  64 eketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqTeevlrlakkl...gvkiivviNKiDrv.....eaeleeiveelkekllekylekge......eevpvvpgSalkgegidaLleaive 184
                 +  +k  ++ l Dt G +d+ +    +  ++D+ +l ++ ++    ++ ++ +    ++   gv++i+v +K+D+       a+l++  ++  +          e        ++ + +Sal+++g++ +++  ++
  MMETSP0890-20130614|1077_1  53 D--GKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSITNPtSFENIRTKWYPEINHhapGVPFILVGTKLDLRndpdtIARLQQKRRQPVNSEEG------EalarelGAYKYIECSALTQQGLKGVFDDAIR 180
                 4..667778889****************************9885344555555544444011677*********998866644444443333322212......11223346789**********99988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.63
# Mc/sec: 756.94
//
Query:       MMETSP0890-20130614|1080_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-24   83.2   0.2      2e-23   82.0   0.0    1.7  2  PF00439.20 Bromodomain
  ------ inclusion threshold ------
      0.048   13.2   0.0       0.12   11.9   0.0    1.7  1  PF09377.5  SBDS protein C-terminal domain


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.9e-27     2e-23       1      83 [.       4      88 ..       4      89 .. 0.97
   2 ?   -3.0   0.0      0.94   6.4e+03      35      50 ..     120     135 ..     108     145 .. 0.68

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 2.9e-27
  PF00439.20  1 ceqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyedar 83
                +++i+++l+++++a +F++pv  +   + dY+++ik+P+dL t++kk+++++y s+++  +d++lv+sN++kyn+ gsd +++a+
  MMETSP0890-20130614|1080_1  4 MKKIVDKLMKRQDAVPFLEPVdwQGLGLVDYPKMIKKPMDLGTVKKKIEENEYASVHACAEDIRLVWSNCKKYNQDGSDFFNLAE 88
                679*****************************************************************************99987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.94
  PF00439.20  35 rPidLktIqkklasgk 50 
                 +++ ++ +  k+++++
  MMETSP0890-20130614|1080_1 120 EKTKFSHMIYKIKQEE 135
                 5566666666666665 PP

>> PF09377.5  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.12      75     123 ..     131     180 ..     122     182 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
   PF09377.5  75 vpvkllkqvvdkilsliesvesqeeagdewevvg.lvePgafkgleefvg 123
                 +++++l q+v+k+++ + +  ++  ++de+e+ +  ++P+ f++l++fv+
  MMETSP0890-20130614|1080_1 131 IKQEELGQLVEKLEDRCPEAIDKTPNDDELEINIdAIDPKTFRELDKFVK 180
                 6788999***********888999999***9977589************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 801.28
//
Query:       MMETSP0890-20130614|1084_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 290.99
//
Query:       MMETSP0890-20130614|1081_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   12.2   0.3      0.066   12.1   0.2    1.0  1  PF09766.4 Fms-interacting protein


Domain annotation for each model (and alignments):
>> PF09766.4  Fms-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   4.9e-06     0.066     109     160 ..       5      56 ..       2      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.9e-06
   PF09766.4 109 klkklkkekeklqqdiekkkefLsslepkLkalkkavepvqealelpfekke 160
                 +  klk+e e+l+   e k+++L++le   ++ ++a++ vq+++   +e+++
  MMETSP0890-20130614|1081_1   5 QILKLKAELEELEFRAEMKEKELAGLEAVTESSESAAQSVQKMMVELYEDDA 56 
                 56699**************************************988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       971  (0.0710211); expected 273.4 (0.02)
Passed bias filter:                      809  (0.059172); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 281.92
//
Query:       MMETSP0890-20130614|1085_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-21   76.2   2.0    3.3e-21   75.5   1.4    1.3  1  PF04801.8 Sin-like protein conserved region
  ------ inclusion threshold ------
       0.19   10.9   0.1       0.19   10.9   0.0    2.4  4  PF07988.7 LMSTEN motif


Domain annotation for each model (and alignments):
>> PF04801.8  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   1.4   4.9e-25   3.3e-21       4     227 ..      29     220 ..      26     232 .] 0.81

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 4.9e-25
   PF04801.8   4 DpVveeidVylskslse.....elyllqYPlrsktrpydddevesvrikpksqklemdlaldtesknydrekgeqlaldgrdeqekltikseildkqaftsskpisnradyavGvikdgelhLtPltgivqlrpslqyldkkdkkkkaedtaeeeeevdeeaeeelkavtvkfsreterqrkrreqsaeflekkeaeetWielkyhakkdeeveaerqkltstnassss 227
                 DpV++e dV+l  s+++      l llq P+r ++r  d +e    rik+k + le++ ++  +++++d           +d  e++++ks  l      +s  +++ ++y + ++k++ +++ Pl++i+q+rp +++ld        ++ +++++++++    ++k +t      ++  +  +++ +++ ++ e++e+W  l + +++++++ a r+ + +++++ss+
  MMETSP0890-20130614|1085_1  29 DPVIKEFDVVLV-SMENelantDLILLQHPVRGAER--DPEEYIGGRIKKKHRVLELETKIPLDQSHFD-----------QDVPERMNLKSRKL------NSALVKPATNYTISFLKNDTFYIAPLKTIFQMRPDMSHLD--------QTISATAKNAEN---PSNKRIT------EKGTTPIQNNAYAIKKQLEDAEPWTDLRVNNINTAKARAIRNAFEASQHDSSQ 220
                 9*********97.33332444899*******99998..8999***************************...........9999**********......7777777888******************************........233333333333...3445555......2234445589999*****************************99999888864 PP

>> PF07988.7  LMSTEN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.7e-05      0.19      28      44 ..      30      46 ..      23      49 .. 0.83
   2 ?   -4.2   0.6       1.4   9.6e+03      26      34 ..      75      83 ..      74      85 .. 0.77
   3 ?   -4.3   0.4       1.6   1.1e+04      16      25 ..      90      99 ..      89     100 .. 0.68
   4 ?   -2.4   0.0      0.39   2.6e+03       8      24 ..     174     190 ..     172     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.7e-05
   PF07988.7 28 KriKELEllLmStENEv 44
                  iKE +  L+S ENE+
  MMETSP0890-20130614|1085_1 30 PVIKEFDVVLVSMENEL 46
                45**************8 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 1.4
   PF07988.7 26 KEKriKELE 34
                K  r+ ELE
  MMETSP0890-20130614|1085_1 75 KKHRVLELE 83
                667899998 PP

  == domain 3    score: -4.3 bits;  conditional E-value: 1.6
   PF07988.7 16 QrhfvDeDPd 25
                Q hf  + P+
  MMETSP0890-20130614|1085_1 90 QSHFDQDVPE 99
                6677667787 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.39
   PF07988.7   8 pqasaaaiQrhfvDeDP 24 
                 +q+ a ai ++  D  P
  MMETSP0890-20130614|1085_1 174 IQNNAYAIKKQLEDAEP 190
                 68888899999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.63
# Mc/sec: 882.47
//
Query:       MMETSP0890-20130614|1079_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-59  199.7  12.0    3.9e-57  193.4   8.3    2.1  1  PF00860.15 Permease family


Domain annotation for each model (and alignments):
>> PF00860.15  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   8.3   2.8e-61   3.9e-57       3     387 ..      73     537 ..      71     539 .. 0.86

  Alignments for each domain:
  == domain 1    score: 193.4 bits;  conditional E-value: 2.8e-61
                 HHHHHHHHHHHH---TTHHHHTT..TS-................H.HHHHHH-----HHHHH.........HT-----------GGGHH.....HHHTT--.....................-TTT----TT---HHHHHHHHHHT----.-HHHH--TTT---HHHH-----------------...---.....................----HHHHHHHHHHHHHHH----S----TTTHHHH-------HHHHH---TTSSHH..........................HHS-SS-----------HH...H.HHHHTHHH.HHHHHHH---HHHHHHHHTS-TTT...----HHHHHH---HHHH------------------HHHHTB--TTT----HHHHHHHT----HHHHHTTS-TTT----HHHH---------HHHHHTTS-SHHHHHHHHHHHH--------- CS
  PF00860.15   3 llllglQhllamfaalvvvPllv..gaa.....lgl.aeelr.qlisatllasGiatllqll.........ifgirlpillgssfafvt.....almiaigsa.................edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa.veg....................llvvslkllllavvvlavilllsvflkglfsqlpiLigiiagwllalfmgivnlspe..........................vseapwfqlpsplkfgtpl.fnlgliltvlavalvavvesiGdiravakvvgrslkp...kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvgvtagvilillglipklaallssIPepVlgGvllvvfgmiaasgvsnlqtadldsarnllivavslvlGlgvatvp 387
                 ++++glQh lam+a++ +   l+  g+a     l +   +++ +l+sa+ ++sGi t +q++         ++g++l +++g+sf+f++     +      s                      ++++ +lg+ +va+ + ++is++ ++   ++++p vvtg+ vlliG sl+  ++k vggg +   +                     l+++s+++++l++ v+a++  l++f ++++++  +++g+i+g++++ ++   ++++                           +++ap + +  +   + pl f ++ +l +++ ++v+++e++Gdi++  + ++++ ++   + +++++lladGl+++l+ l+ ++p+tt+++n+Gv+alt+ asr  g+  + +lil+g+++k++a +ssIP  V+gG  l  f+m+ +sg+++   ++++ +rn++i+a+sl+lGlgva  p
  MMETSP0890-20130614|1079_1  73 AMIMGLQHALAMVAGIATSGGLLiaGDAcfawqLDSeMCDAKeYLVSAAWITSGILTCVQVFraklggtgyYLGTGLVSVMGTSFTFLPiardmV-----ISEirdakaqgkckdngdcvGFGREGYGKFLGTAMVAAWIEVIISFLPVK-VRQKIFPSVVTGTAVLLIGGSLISSGIKYVGGGVFCaENDlsrsasfgspqfcnengnvvLPFGSPEYVGLGFSVIAMSTFLQYFGSPFLKSTFLFWGLIFGCFVSGITSY-EAKEGdftigddgniepaqvgrqynywndnrIKDAPKLIF--LWDTTFPLkFAPEYFLPIVIGFFVSSAETVGDITMSCQASRLPAQGrdlEARIQGGLLADGLNSFLATLFTSPPNTTFSQNNGVIALTQCASRAAGFACAFWLILFGVVGKVGAAFSSIPICVVGGLVLQCFAMVFVSGIAIAT-KNYN-RRNAFILALSLALGLGVAMEP 537
                 689*************999865512555777656665566678**********************************************655542.....2223555677888999999966899************************4.779****************************9986422212333333444445555566778999******************************************9993.3333347999****************88877767766644..333344447*******************************99999999********************************************************************************************9865.4555.8***************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:00.78
# Mc/sec: 2150.58
//
Query:       MMETSP0890-20130614|1086_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   16.5   0.6     0.0084   16.0   0.4    1.2  1  PF12906.2 RING-variant domain


Domain annotation for each model (and alignments):
>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   6.1e-07    0.0084       1      34 [.      28      64 ..      28      68 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.1e-07
                ETTTTEE-----..--.-------..TTS--HHHHHH CS
   PF12906.2  1 CriCleeeeeseplir.pCkCkGs..lklvHesClee 34
                C +Cle+ ++++pl++  C C+ +  +++ H +C +e
  MMETSP0890-20130614|1086_1 28 CMFCLEGGTSEDPLFHsGCGCRPDsgMSIGHIKCFQE 64
                9******99999776527***9652277889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.57
# Mc/sec: 285.08
//
Query:       MMETSP0890-20130614|1088_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-18   66.3   1.8    1.2e-09   38.0   0.1    2.9  2  PF13499.1  EF-hand domain pair
    3.1e-17   60.3   0.3    0.00017   20.5   0.0    4.3  4  PF00036.27 EF hand
    1.1e-15   55.9   2.0    0.00034   20.1   0.0    4.4  4  PF13405.1  EF-hand domain
    2.4e-09   36.5   1.3    0.00046   19.6   0.0    3.7  3  PF13833.1  EF-hand domain pair
     0.0021   17.6   0.4     0.0074   15.8   0.0    2.2  3  PF08044.6  Domain of unknown function (DUF1707)
     0.0024   17.0   0.1       0.87    8.9   0.0    3.6  3  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.011   15.9   1.5       0.13   12.4   0.1    2.2  2  PF13155.1  Toprim-like
      0.028   13.8   0.0       0.21   11.0   0.0    2.3  2  PF12949.2  HeH/LEM domain
      0.034   12.8   0.0       0.46    9.1   0.0    2.1  2  PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
      0.069   13.2   0.2       0.17   11.9   0.0    1.8  2  PF13362.1  Toprim domain
      0.071   12.7   0.4       0.18   11.4   0.3    1.8  1  PF10075.4  COP9 signalosome, subunit CSN8
      0.072   12.9   0.0        8.8    6.2   0.0    2.6  2  PF08726.5  Ca2+ insensitive EF hand
       0.13   12.1   1.2       0.93    9.3   0.0    2.8  4  PF05589.6  Protein of unknown function (DUF768)


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   1.1e-12   1.2e-09       2      64 ..      80     138 ..      66     140 .. 0.92
   2 !   26.4   0.1   4.8e-09   5.1e-06       1      64 [.     151     202 ..     151     204 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 1.1e-12
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64 
                 lk +++++D+d++g+++ + L+++l + g++ ++ e++ +    +  lD++++ v+++ Ef++
  MMETSP0890-20130614|1088_1  80 LKLIWEQIDTDNTGTITIAQLREALHANGHHTTEAEMKSF----ILGLDTDHNDVIDYYEFAA 138
                 55689************************88888888888....*****************85 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 4.8e-09
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64 
                 +++e+F+ lDk+++gy+++e+L++++        +e+  ev    ++  D   dG++ ++Ef++
  MMETSP0890-20130614|1088_1 151 RIQEIFNHLDKQHHGYITVEDLTEIMGS------REHAMEV----LG-DDFP-DGKIHLDEFRA 202
                 6899*********************965......5555555....33.4444.89999999875 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.1e-07   0.00054       1      27 [.      79     105 ..      79     107 .. 0.92
   2 !    9.7   0.0   0.00047      0.49       5      24 ..     119     138 ..     115     141 .. 0.81
   3 !   20.5   0.0   1.6e-07   0.00017       2      27 ..     152     177 ..     151     179 .. 0.94
   4 !    6.5   0.0    0.0047         5      14      27 ..     192     205 ..     192     207 .] 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.1e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                 +lk +++ +D+D++G+I+   ++eal+
  MMETSP0890-20130614|1088_1  79 DLKLIWEQIDTDNTGTITIAQLREALH 105
                 58899*******************997 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00047
                 HHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfke 24 
                 ++  +D+D++  I++ Ef +
  MMETSP0890-20130614|1088_1 119 FILGLDTDHNDVIDYYEFAA 138
                 55668*************75 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 ++e+F+++Dk + G+I++e++ e++ 
  MMETSP0890-20130614|1088_1 152 IQEIFNHLDKQHHGYITVEDLTEIMG 177
                 89**********************96 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0047
                 SSEBEHHHHHHHHH CS
  PF00036.27  14 dGkIsfeEfkealk 27 
                 dGkI ++Ef++ +k
  MMETSP0890-20130614|1088_1 192 DGKIHLDEFRARIK 205
                 9********98665 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06    0.0012       4      30 ..      82     107 ..      79     108 .. 0.86
   2 !    8.2   0.0    0.0022       2.3       3      24 ..     117     138 ..     115     144 .. 0.80
   3 !   20.1   0.0   3.2e-07   0.00034       1      27 [.     151     177 ..     151     187 .. 0.92
   4 ?    5.7   0.0     0.014        14      11      24 ..     189     202 ..     184     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
                 ---GCC-------B---HHHHHHH.H- CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLrksl 30 
                  +++++D+d++G+i++++Lr aL+ ++
  MMETSP0890-20130614|1088_1  82 LIWEQIDTDNTGTITIAQLREALH-AN 107
                 57889******************9.65 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0022
                 H---GCC-------B---HHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrd 24 
                 +++   +D+d++  id  E+ +
  MMETSP0890-20130614|1088_1 117 KSFILGLDTDHNDVIDYYEFAA 138
                 5566679*************76 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 3.2e-07
                 HHH---GCC-------B---HHHHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                 +++e+F+++Dk + G+i+ e+L  ++ 
  MMETSP0890-20130614|1088_1 151 RIQEIFNHLDKQHHGYITVEDLTEIMG 177
                 689*********************997 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.014
                 ------B---HHHH CS
   PF13405.1  11 kdgdGkidaeELrd 24 
                 +  dGki ++E+r+
  MMETSP0890-20130614|1088_1 189 DFPDGKIHLDEFRA 202
                 447*********96 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.4e-07   0.00046       2      51 ..      92     140 ..      91     143 .. 0.90
   2 !   10.3   0.0   0.00035      0.37      22      48 ..     147     173 ..     138     179 .. 0.81
   3 ?    3.9   0.0     0.035        37      39      49 ..     192     202 ..     186     206 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4.4e-07
   PF13833.1   2 kGlItreeLkral.allglkglseeevdilfrefDtdgdGkisfeEFcvll 51 
                 +G It + L++al a+ g + ++e e+   +  +Dtd++  i++ EF + l
  MMETSP0890-20130614|1088_1  92 TGTITIAQLREALhAN-GHH-TTEAEMKSFILGLDTDHNDVIDYYEFAASL 140
                 799**********777.555.**************************9876 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00035
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFc 48 
                 + ++ ++++f+++D  + G+i+ e+  
  MMETSP0890-20130614|1088_1 147 IRDDRIQEIFNHLDKQHHGYITVEDLT 173
                 667889***************999865 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.035
   PF13833.1  39 dGkisfeEFcv 49 
                 dGki+++EF +
  MMETSP0890-20130614|1088_1 192 DGKIHLDEFRA 202
                 9********76 PP

>> PF08044.6  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.9   7.3e+03      12      19 ..      97     104 ..      95     106 .. 0.72
   2 ?   -3.4   0.0       7.1   7.4e+03      21      30 ..     164     173 ..     162     174 .. 0.74
   3 !   15.8   0.0   7.1e-06    0.0074       8      34 ..     179     205 ..     178     207 .] 0.95

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6.9
   PF08044.6  12 adlLreal 19 
                 +++Lreal
  MMETSP0890-20130614|1088_1  97 IAQLREAL 104
                 57888887 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.1
   PF08044.6  21 eGrLtleEyd 30 
                 +G++t e+++
  MMETSP0890-20130614|1088_1 164 HGYITVEDLT 173
                 6888888765 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 7.1e-06
   PF08044.6   8 ReqvadlLrealaeGrLtleEydeRle 34 
                 Re+++++L++ + +G + l+E++ R++
  MMETSP0890-20130614|1088_1 179 REHAMEVLGDDFPDGKIHLDEFRARIK 205
                 9************************85 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00083      0.87       7      19 ..      86      98 ..      85     105 .. 0.83
   2 ?    1.6   0.0      0.16   1.7e+02       1      23 [.     152     174 ..     152     176 .. 0.76
   3 ?    2.0   0.0      0.13   1.3e+02      13      23 ..     192     202 ..     192     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00083
                HH--S----B-HH CS
   PF13202.1  7 afDlNgDGkIsre 19
                ++D+++ G+I++ 
  MMETSP0890-20130614|1088_1 86 QIDTDNTGTITIA 98
                9*********986 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.16
                 HHHHHHHH--S----B-HHHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkr 23 
                 ++++F+ +D+   G I+ e+L +
  MMETSP0890-20130614|1088_1 152 IQEIFNHLDKQHHGYITVEDLTE 174
                 57788888887778999998876 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.13
                 ---B-HHHHHH CS
   PF13202.1  13 DGkIsreELkr 23 
                 DGkI  +E+++
  MMETSP0890-20130614|1088_1 192 DGKIHLDEFRA 202
                 9********86 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00012      0.13      25      93 ..      56     129 ..      28     134 .. 0.74
   2 ?    2.8   0.1      0.13   1.3e+02      43      80 ..     149     185 ..     124     201 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00012
   PF13155.1  25 slaslgtkltkalakyleekre...keivlalDnDeaGrkaaeklkkalkekgkenekvkvvrlpek.k.Dwne 93 
                  l+ l++ + + la+ l +k+    k i    D D+ G  ++++l++al ++g ++++++ ++ + + + D n+
  MMETSP0890-20130614|1088_1  56 GLSKLKQVSLNVLAHHLTQKEIadlKLIWEQIDTDNTGTITIAQLREALHANGHHTTEAEMKSFILGlDtDHND 129
                 677777877789999997777765455999**********************9777776666666554456666 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.13
   PF13155.1  43 ekrekeivlalDnDeaGrkaaeklkkalkekgkenekv 80 
                 + r +ei  +lD+  +G  ++e l +++ +++ ++ +v
  MMETSP0890-20130614|1088_1 149 DDRIQEIFNHLDKQHHGYITVEDLTEIMGSRE-HAMEV 185
                 223366999***************99988774.55554 PP

>> PF12949.2  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.21       3      17 ..      94     108 ..      94     108 .. 0.94
   2 ?   -0.8   0.0         1   1.1e+03       5      14 ..     168     177 ..     167     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0002
   PF12949.2   3 sLtVaqLRriLvehg 17 
                 ++t+aqLR++L+++g
  MMETSP0890-20130614|1088_1  94 TITIAQLREALHANG 108
                 78***********97 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1
   PF12949.2   5 tVaqLRriLv 14 
                 tV +L +i++
  MMETSP0890-20130614|1088_1 168 TVEDLTEIMG 177
                 9******986 PP

>> PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00044      0.46     166     218 ..      57     109 ..      47     123 .. 0.86
   2 ?    1.5   0.0     0.094        99      91     126 ..     134     169 ..     125     183 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00044
   PF06239.6 166 lpklknlnpfplprelpddpleLaklalermskdlsskitvfqlsevesseds 218
                 l klk+++   l ++l+++++   kl+ e++ +d +  it+ ql e  ++++ 
  MMETSP0890-20130614|1088_1  57 LSKLKQVSLNVLAHHLTQKEIADLKLIWEQIDTDNTGTITIAQLREALHANGH 109
                 689******************8889*******************998877664 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.094
   PF06239.6  91 YkalldvfPkgkfiprnlfqavflhyprqqelaidv 126
                 Y+    ++ +++ i    +q++f+h  +q +  i v
  MMETSP0890-20130614|1088_1 134 YEFAASLLARNQNIRDDRIQEIFNHLDKQHHGYITV 169
                 5555566677777788889********999887776 PP

>> PF13362.1  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.17      34      89 ..      70     130 ..      44     137 .. 0.69
   2 ?   -2.0   0.0       3.8     4e+03      49      77 ..     160     186 ..     142     195 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00017
   PF13362.1  34 aldlpervkrv.iIa..aDnDkanegqkaaeklaerleasgievsvlep.......geegeDwndv 89 
                    ++++  ++  I+   D+D++  g  ++++l e+l+a+g++ +  e+       ++   D ndv
  MMETSP0890-20130614|1088_1  70 HHLTQKEIADLkLIWeqIDTDNT--GTITIAQLREALHANGHHTTEAEMksfilglDT---DHNDV 130
                 44444444444555511566666..********************9999887753323...66665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 3.8
   PF13362.1  49 DnDkanegqkaaeklaerleasgievsvl 77 
                 D+  +  g  ++e+l+e + ++ ++++vl
  MMETSP0890-20130614|1088_1 160 DKQHH--GYITVEDLTEIMGSREHAMEVL 186
                 33333..6666777777777777766665 PP

>> PF10075.4  COP9 signalosome, subunit CSN8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00018      0.18       5      47 ..      62     100 ..      59     187 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00018
   PF10075.4   5 elytliLlkaLtqndiadfrlllkrlpaaikesdeeiqkllsL 47 
                 ++  ++L+++Ltq  iad +l +++++ +   +     ++++L
  MMETSP0890-20130614|1088_1  62 QVSLNVLAHHLTQKEIADLKLIWEQIDTDNTGT----ITIAQL 100
                 567799********************9996665....233333 PP

>> PF08726.5  Ca2+ insensitive EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0084       8.8      22      68 ..      95     141 ..      89     142 .. 0.87
   2 ?    4.0   0.0     0.042        44       7      29 ..     151     174 ..     147     191 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0084
   PF08726.5  22 vTeedLraallpeqaeyllerMpeys.gpegdetegayDYesFleklf 68 
                 +T  +Lr+al ++      ++M+++  g     +++  DY +F+ +l+
  MMETSP0890-20130614|1088_1  95 ITIAQLREALHANGHHTTEAEMKSFIlGL-DTDHNDVIDYYEFAASLL 141
                 8999********************99433.5778899******99986 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.042
   PF08726.5   7 qveeaFral.aegKpYvTeedLra 29 
                  + e F  l ++   Y+T edL +
  MMETSP0890-20130614|1088_1 151 RIQEIFNHLdKQHHGYITVEDLTE 174
                 577889999888889******976 PP

>> PF05589.6  Protein of unknown function (DUF768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00089      0.93      10      35 ..       9      36 ..       7      44 .. 0.84
   2 ?   -1.9   0.0       2.7   2.8e+03      33      40 ..      74      81 ..      67     107 .. 0.58
   3 ?   -0.6   0.0       1.1   1.1e+03      19      41 ..     124     144 ..     123     159 .. 0.73
   4 ?   -2.6   0.0       4.7     5e+03      23      33 ..     164     174 ..     153     178 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00089
   PF05589.6 10 dkWiadnvpettkaD..visiaeltekl 35
                ++Wi +nv + ++aD   + i+ +++k 
  MMETSP0890-20130614|1088_1  9 HNWIVKNVGDAAIADlsGLKIDGMAKKK 36
                89*************6668999999885 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.7
   PF05589.6 33 ekliadAk 40
                +k iad k
  MMETSP0890-20130614|1088_1 74 QKEIADLK 81
                44444432 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.1
   PF05589.6  19 ettkaDvisiaeltekliadAka 41 
                 +t  +Dvi   e +  l+a  + 
  MMETSP0890-20130614|1088_1 124 DTDHNDVIDYYEFAASLLA--RN 144
                 6888999999999999885..44 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 4.7
   PF05589.6  23 aDvisiaelte 33 
                    i +++lte
  MMETSP0890-20130614|1088_1 164 HGYITVEDLTE 174
                 45688899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       751  (0.0549298); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.73
# Mc/sec: 679.51
//
Query:       MMETSP0890-20130614|1091_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 499.01
//
Query:       MMETSP0890-20130614|1090_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-31  105.3  16.5    3.2e-08   33.0   0.0    6.7  7  PF00400.27 WD domain, G-beta repeat
    2.7e-08   33.6   0.4    0.00031   20.3   0.0    2.2  2  PF13925.1  con80 domain of Katanin


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.2e-07   0.00083       3      39 .]       4      41 ..       2      41 .. 0.94
   2 !   24.6   0.0     2e-09   1.4e-05       4      39 .]      54      89 ..      51      89 .. 0.94
   3 !   33.0   0.0   4.6e-12   3.2e-08       4      39 .]      97     132 ..      94     132 .. 0.96
   4 !   25.6   0.1     1e-09     7e-06       3      39 .]     138     176 ..     136     176 .. 0.96
   5 !    7.7   0.0   0.00045       3.1      17      39 .]     200     222 ..     196     222 .. 0.90
   6 ?    2.2   0.2     0.025   1.7e+02      14      39 .]     240     264 ..     234     264 .. 0.90
   7 ?   -2.8   0.1       0.9   6.2e+03      21      38 ..     292     309 ..     287     310 .. 0.59

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.2e-07
                EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                 ++++ +H s Vtcva      ++lasg++D+ + +W+
  MMETSP0890-20130614|1090_1  4 KVHEWVAHYSCVTCVALGNKtKTILASGGEDKRVNIWK 41
                578899*******************************6 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 2e-09
                EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                + +l gH s+V+c++f+ + + l+sg+  gt+r++d
  MMETSP0890-20130614|1090_1 54 LCSLGGHLSAVSCLCFDEEERELVSGGGGGTVRVYD 89
                6789******************************98 PP

  == domain 3    score: 33.0 bits;  conditional E-value: 4.6e-12
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 k+tl+gH + V+ v  +p g ++asg++D  +++Wd
  MMETSP0890-20130614|1090_1  97 KRTLSGHRNRVNVVHLHPFGEFVASGGADAHLKIWD 132
                 89*********************************9 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 1e-09
                 EEEEEESSSSSEEEEEEESSSTEEEEEE..TTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgS..rDgtirlWd 39 
                 c+++++g  +++++++fspdg+++as+   + g++r+Wd
  MMETSP0890-20130614|1090_1 138 CIQSYKGDGGGIESLRFSPDGKWVASCAsnDQGSLRVWD 176
                 99****************************99******9 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.00045
                 EEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  17 vafspdgpllasgSrDgtirlWd 39 
                 + fsp   +la ++ D+t rl+d
  MMETSP0890-20130614|1090_1 200 IEFSPIEFVLAAACTDRTTRLYD 222
                 77999999*************98 PP

  == domain 6    score: 2.2 bits;  conditional E-value: 0.025
                 EEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  14 VtcvafspdgpllasgSrDgtirlWd 39 
                 +  ++fs +g+ ++s S+ +++r W+
  MMETSP0890-20130614|1090_1 240 IKTLCFSNSGKSVLSLSD-SSLRQWS 264
                 7889*************9.9999996 PP

  == domain 7    score: -2.8 bits;  conditional E-value: 0.9
                 SSSTEEEEEETTSEEEEE CS
  PF00400.27  21 pdgpllasgSrDgtirlW 38 
                 ++ ++la + + + + +W
  MMETSP0890-20130614|1090_1 292 HENKCLAVAKASNFVSIW 309
                 445666666666677777 PP

>> PF13925.1  con80 domain of Katanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0     3e-05       0.2       7      49 ..     446     488 ..     444     495 .. 0.92
   2 !   20.3   0.0   4.6e-08   0.00031      84     145 ..     547     606 ..     542     627 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3e-05
   PF13925.1   7 mlsvLssRltkLkvvrtlWakndikaaiaairrikDlavlvDv 49 
                 ++ +L++Rl  L+++ ++W ++d+ +a++ +r    +a l+D+
  MMETSP0890-20130614|1090_1 446 TTRALEARLEALRTASRIWVRGDAIKALDNVRHACSTAPLADL 488
                 6789*****************************999**99997 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 4.6e-08
   PF13925.1  84 shisvglevlrsilkkfrpvikealsaaassvgvdlsreeRlqkcqkckqqLkkikqlvkkl 145
                 +h++v++++++ +++ f++ i ++++  +  +gvdl++ eR+ +c+k k  + +i++ +++ 
  MMETSP0890-20130614|1090_1 547 RHLKVAIDTIYRVTELFASYIVSTVD--SVLIGVDLAQDERRARCEKAKRLFLNIVRHIAAI 606
                 89**********************99..579************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.31
# Mc/sec: 1156.11
//
Query:       MMETSP0890-20130614|1093_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-08   34.7   0.1    3.2e-08   33.8   0.0    1.5  1  PF10270.4  Membrane magnesium transporter
  ------ inclusion threshold ------
      0.068   12.8   0.1      0.091   12.4   0.1    1.1  1  PF02687.16 FtsX-like permease family


Domain annotation for each model (and alignments):
>> PF10270.4  Membrane magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.7e-12   3.2e-08       3      69 ..      13      78 ..      11      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 4.7e-12
   PF10270.4  3 tvGlllLlHagySalehrkllkltseaeatslPldIvlEtlvslllillGivlsaeklkpiqw....skwa 69
                 +G++lL+Hag+S+++++ l       e + +P+d+++E+ v++++ ++ +++ + +lk+i++    +++a
  MMETSP0890-20130614|1093_1 13 GLGMMLLVHAGFSTIHIKGLDP-----EVKLPPIDVLIEVCVAFFFAVISSLMQMPELKKIRNaadlDEFA 78
                689************9988766.....48899*******************************44333333 PP

>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.3e-05     0.091      59     118 ..      10      67 ..       4      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
  PF02687.16  59 lllGlllglllaqllsqallkfnssslpisldpitlllilllilllallaallparrilk 118
                 +l Gl+  ll+   +s++   + + ++ + l+pi++l+ +++++++a++++l  +  + k
  MMETSP0890-20130614|1093_1  10 FLSGLGMMLLVHAGFSTIH--IKGLDPEVKLPPIDVLIEVCVAFFFAVISSLMQMPELKK 67 
                 5566777777776666653..7889*************************9987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:00.80
# Mc/sec: 338.49
//
Query:       MMETSP0890-20130614|1094_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0057   16.3   0.7     0.0057   16.3   0.5    2.2  3  PF00472.15 RF-1 domain
  ------ inclusion threshold ------
       0.55    9.0   5.1        1.1    7.9   3.5    1.6  1  PF02535.17 ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> PF00472.15  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3      0.88     6e+03      77      91 ..       9      23 ..       2      33 .. 0.38
   2 !   16.3   0.5   8.4e-07    0.0057      15     104 ..      61     178 ..      51     187 .. 0.73
   3 ?   -2.2   0.3      0.44     3e+03      76      76 ..     257     257 ..     223     283 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.88
  PF00472.15 77 kkkrektketrkskk 91
                ++k++++k++ +   
  MMETSP0890-20130614|1094_1  9 ENKKRERKSMSRFTY 23
                333333333333333 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 8.4e-07
  PF00472.15  15 leietirssGpGGQnVNkvesaVrlthkptg.......................ivvkaqeeRsqeqNrekAlerLkallaeae......lkkkrektketrkskkrrlerkskiRtYn 104
                 l++ +++s+G+ GQ+  k ++   l + ++                          +k  +++   +N     e+L ++l +         kkk+++  +++k k +++ +k+   +Y+
  MMETSP0890-20130614|1094_1  61 LHLLVYKSKGKAGQQKKKLKTFTGLVYGDDPatdrlryeeranklkradiekmmSLLKIDKSKASFNNNIPSKEMLVTRLIDYLeeptsqAKKKKSEATSSKKRKSSSGRAKNS-QSYS 178
                 566789****************9999984444467888888899999999999888999**********999999999988874455543333333333333333333333333.4565 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.44
  PF00472.15  76 l 76 
                 +
  MMETSP0890-20130614|1094_1 257 E 257
                 1 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.5   0.00017       1.1      78     167 ..     197     292 ..     135     298 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00017
  PF02535.17  78 h......plkgllvllGffllllleelltmikesdahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkes 167
                        + k + +++G  l   ++++++ i+e+d++  +   +++k++  +t++ a++++e+++e ae+ +   eee+ ++d  +  ++e+++++
  MMETSP0890-20130614|1094_1 197 SdmspsaLIKACESFIGTKLPNYAKSIVKSIIEEDDQDEQPPPKKSKKKAAATPPPAEEEEEEEEEEAEEDDDDDEEEADNDDENEADNDEEEADE 292
                 03444447788888899999999999********88888888888888888888888777776566666666666666666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1292  (0.0944997); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        59  (0.00431539); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.81u 0.47s 00:00:02.28 Elapsed: 00:00:01.48
# Mc/sec: 556.99
//
Query:       MMETSP0890-20130614|1092_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-65  220.3   0.0    2.1e-65  219.5   0.0    1.4  1  PF00009.22 Elongation factor Tu GTP binding domain
    1.7e-39  133.9   0.0      3e-39  133.1   0.0    1.4  1  PF03764.13 Elongation factor G, domain IV
    1.8e-25   88.4   0.4    5.5e-25   86.9   0.1    2.0  2  PF00679.19 Elongation factor G C-terminus
    2.3e-15   56.3   4.7    1.9e-14   53.3   0.2    3.5  4  PF03144.20 Elongation factor Tu domain 2
    0.00033   20.5   0.0    0.00091   19.0   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.047   12.6   0.0    1.4  1  PF04548.11 AIG1 family


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   0.0   9.3e-69   2.1e-65       3     187 ..      59     339 ..      57     340 .. 0.93

  Alignments for each domain:
  == domain 1    score: 219.5 bits;  conditional E-value: 9.3e-69
                 EEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHH........................................................................................HHHCTTGCT.................CGEEEEEE-STCCHHHHHHHHHHHHHSC CS
  PF00009.22   3 irnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekl........................................................................................lekylekge.................eevpvvpgSalkgegidaLleaivellp 187
                 +rnigi++h+D+GKtT+t+++ly++g+ +k ge++eg +++d++++e+ergiTi+saa++++  +++++in+iDtPGHvdF+ ev+r+lrvlDga+ v+d v Gvepq+e+v+r+a+k+gv+++++iNK+Dr++a++ + ve+++e l                                                                                                e                   vpv++g a+k++g+++Ll+a+++++p
  MMETSP0890-20130614|1092_1  59 YRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCY--WNDHQINIIDTPGHVDFTLEVERSLRVLDGAIAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRMGANYYKDVEMIREMLgsvpavlqlpiattptppepdfdgvvdlvtmeaiiwsgeemgakferipldqadiaddikekatkfradlvelaveqdedalmaylegE-------EpdiatlkkcirtgtlanAFVPVLCGTAFKNKGVQPLLDAVIDYMP 339
                 69*********************************9999***********************..*********************************************************************************888**********************************************************9999999999998888888888855555550.......2555555555555556668*************************98 PP

>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.0   1.3e-42     3e-39       1     119 [.     537     657 ..     537     658 .. 0.98

  Alignments for each domain:
  == domain 1    score: 133.1 bits;  conditional E-value: 1.3e-42
                 -EEB-----SS-EE.E-----------------EEEEEE--...----EEEE--------GGGHHHHH---TTTT-----------SEEEEEEE----TTT--HHHHHH---HHHHHHHH-- CS
  PF03764.13   1 pqVayretigkdvkerekklkkqsggdgqyakvilriePle...gggnefvdetkggqvpkefkeavekGfqealkeGplagepvtdvkvtLtdgslhevdsseaafkpaarralkeallkA 119
                 pqV+yre i+  ++ +++++kkqsgg+gqya+v + +ePl+   ++ +efv+++kgg+vpke+++ vekG++++l++G+lag+pv ++++tL+dg +h+vdss +af++a+r a +e+l+k+
  MMETSP0890-20130614|1092_1 537 PQVSYREAITASAE-IDYTHKKQSGGSGQYARVKVIFEPLNeegKTDFEFVSDIKGGAVPKEYIPGVEKGIESVLSSGVLAGYPVLGLRATLVDGAFHDVDSSVLAFEIAGRAATREGLRKG 657
                 8************9.**************************99999*************************************************************************997 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   3.7e+03       4      43 ..     464     507 ..     463     512 .. 0.69
   2 !   86.9   0.1   2.4e-28   5.5e-25       1      88 [.     660     746 ..     660     747 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.6
  PF00679.19   4 EPimeveievp....eeylgkvisdltkrrGeilsmenagenrv 43 
                 EP+++v +e+     ++ +g+++  l++    + s+  +++ ++
  MMETSP0890-20130614|1092_1 464 EPVISVAVEAKskkdQDKMGEALARLAAEDPSFRSVYDEENAQT 507
                 89999999998777777777777777776666666666644444 PP

  == domain 2    score: 86.9 bits;  conditional E-value: 2.4e-28
  PF00679.19   1 vllEPimeveievpeeylgkvisdltkrrGeilsmenagenrvvieaevPlaeligysteLrslTsGrgsfslefsgYepvpgeklek 88 
                 +l+EP+m+v++++peey+g++i+d+++rrG +++  ++ +  ++++a+vPla++++y + Lrs+++Gr+ +++++s+Ye vp ++ ++
  MMETSP0890-20130614|1092_1 660 RLMEPMMQVDVTTPEEYMGDIIGDINSRRGMVEELGER-GIAKTVRAKVPLANMFQYVSSLRSISKGRAAYTMTLSKYELVPPNVEKE 746
                 59************************************.*******************************************998765 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.98   2.2e+03      24      57 ..      81     111 ..      79     114 .. 0.82
   2 !   53.3   0.2   8.5e-18   1.9e-14       1      74 []     382     449 ..     382     449 .. 0.96
   3 ?   -2.4   0.0       2.1   4.7e+03      26      45 ..     559     578 ..     552     606 .. 0.64
   4 ?    2.6   0.0     0.057   1.3e+02      31      71 ..     655     690 ..     642     691 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.98
                 TTCTEEEEEEEEEEEEETTCEESEEECEE--EEE CS
  PF03144.20  24 ndtskkeivtrvrsletfngdldeavaganaGvi 57 
                 ++t+k+   ++++ ++   + +d+++++++ G++
  MMETSP0890-20130614|1092_1  81 YYTGKS---HKIGEVHEGGATMDWMEQEQERGIT 111
                 579999...9999999999999999988887776 PP

  == domain 2    score: 53.3 bits;  conditional E-value: 8.5e-18
                 EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EEE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtlt 74 
                 Gt++++r+ysG+l  G tv +  + ++     +rv++++ ++++ + +v++a aG+i+a+ gl+++  +G tl+
  MMETSP0890-20130614|1092_1 382 GTLTFCRIYSGVLTAGSTVFN--SVKGDR---ERVGRMLQMHANDRTEVKEARAGDIIAVAGLKQT-TTGETLC 449
                 89*******************..988666...*********************************6.*****98 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.1
                 CTEEEEEEEEEEEEETTCEE CS
  PF03144.20  26 tskkeivtrvrsletfngdl 45 
                 ++++++++rv+ ++ + +++
  MMETSP0890-20130614|1092_1 559 SGGSGQYARVKVIFEPLNEE 578
                 45556889999998887744 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.057
                 EEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT--- CS
  PF03144.20  31 ivtrvrsletfngdldeavaganaGvivaikgledaiikGd 71 
                  ++ vr +e +++ +d   ++++ G+i++   +++  ++G+
  MMETSP0890-20130614|1092_1 655 RKGQVRLMEPMMQ-VDVTTPEEYMGDIIGD--INS--RRGM 690
                 5688888888877.**************98..665..5555 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     4e-07   0.00091       2     114 .]      62     185 ..      61     185 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4e-07
                 EEEE--TT---HHHHHHHH...CSTCTE..ETS-TT-SSSESEEEE...............ETTEEEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHHH.TCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLt...gekaak..vsdypgtTrditenev...............kkekiilvDtPGiiegasedkeiegikkylekveradvlllvvdasavlkeadkellnele.akkplilvlnk 114
                 ++i+ +  +GK+t   +++   g+   k    +  g T d +e+e                ++++i+++DtPG +         +++ +++++++ +d+++ v+d  a  + + ++++++ +  ++p +  +nk
  MMETSP0890-20130614|1092_1  62 IGIMAHIDAGKTTTTERILyytGK-SHKigEVHEGGATMDWMEQEQergititsaattcywNDHQINIIDTPGHV---------DFTLEVERSLRVLDGAIAVFDGVAGVEPQSETVWRQANkYGVPRMCFINK 185
                 566667789*********966532.333113333467777755332233444444555553444589******65.........3555688999***********87755456778888874356777777665 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05     0.047      31      64 ..     106     139 ..      65     149 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
                 -------S-EEEEEEETTEEEEEEE--CGCCTTC CS
  PF04548.11  31 saqsvtkkcqkksrtwdgkkinViDTPglfdlsv 64 
                 +++++t ++   +  w++++in+iDTPg +d   
  MMETSP0890-20130614|1092_1 106 QERGITITSAATTCYWNDHQINIIDTPGHVDFTL 139
                 67899999999999**************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:01.18
# Mc/sec: 1539.35
//
Query:       MMETSP0890-20130614|1096_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-20   73.4   0.0    2.4e-20   72.6   0.0    1.4  1  PF00928.16 Adaptor complexes medium subunit family


Domain annotation for each model (and alignments):
>> PF00928.16  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   1.8e-24   2.4e-20      12     252 ..     294     530 ..     284     540 .] 0.82

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 1.8e-24
                 --EEEEEEEEEEEEEE-----EEEEEEE-EEEEEE------EEEE---SS-B------B-SEEEEETT-B-TTHHHH--EEE------EEE......EEEEB-S-..S--SEEEEEEEE..-----EEEEEEEEE-S-T.T--BEEEEEEE------EEEEE--STTEEEE---..-EEEEE--B--.......-EE---EEEE----------EEEEEEEET-----------EEE--------EEEEEE CS
  PF00928.16  12 knevyldviEkvsvlvdkdgkllnsevqGtialkskLsGmpevklsLndelniekkgielddvsfHpcVrlskfeservisFiPpdgefeL......mrYrvsee..sklplklecqvke.eskgrievnvklesqlkr.klslenvkitiplPkevskpvlkvsdGkakydseenvleWsikklpgekehalsgelelsaeqekeekdrekppvsveFsipgataSglkVrslkvsekkenvkpykwVry 252
                 ++  ++ + Ek+sv ++++g l++ + +Gt++++++ +  ++ k+ ++     ++  +   + ++Hp V +s++es++ +s+   +  f +      +r+ +s++  s +pl l+c ++e e  g i+vn+++   l++ +l+l++v+ ++pl ++  +p+++  dG++++ +++++l+W+++ +++      sg+le++ ++++ +   +++p+sv+F+ ++    +l++ s+++  +  ++ p+ +  +
  MMETSP0890-20130614|1096_1 294 QQPMTILIDEKLSVQLSQEGVLESFDLKGTLTVTANEELAAKTKVLISPAA-DHSLPS-GLNFQVHPKVLKSEWESSNLLSLKDKEKGFPIgrpvgvLRWSLSSNdeSIVPLILNC-WPEdEGGGTINVNIEYT--LQKlQLELHKVEFHVPLGTA-AQPHIISLDGSYSHSPSDQSLIWELDLIDS---SNSSGTLEFTIQSDDLA---AFFPISVSFTCKQLFN-DLSIASVTTTDDGADNIPFSV-SK 530
                 567788899************************997777788888888864.344443.456799****9999***********9999999888888***9999988999******.55436666666666655..55556************966.6*****************************...66789999999999766...9***********9888.999999998776566666653.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       662  (0.0484201); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.95
# Mc/sec: 1362.14
//
Query:       MMETSP0890-20130614|1097_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.89
# Mc/sec: 1066.24
//
Query:       MMETSP0890-20130614|1100_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-10   39.4   0.2    6.7e-10   38.9   0.2    1.3  1  PF00550.20 Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.2   4.9e-14   6.7e-10       1      67 []      49     115 ..      49     115 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.9e-14
  PF00550.20   1 eklleivaevlgldpdeidldtdlfelGlDSllaveliarleeefgveipvedlfelptlaelaayl 67 
                 +++l++v+   ++dp+ +++++ + +l lDSl++ve+  ++eeef +eip ++     t+ + ++y+
  MMETSP0890-20130614|1100_1  49 DRILTVVKNFEKVDPKLVTPEAAFKDLSLDSLDIVEVCMAIEEEFAIEIPDAEADKILTIPDAIEYI 115
                 589999999999999*************************************999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 411.77
//
Query:       MMETSP0890-20130614|1099_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.4e-116  389.1  27.3   1.6e-116  388.9  19.0    1.0  1  PF00909.16 Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.9  19.0  1.2e-120  1.6e-116       2     399 .]      28     446 ..      27     446 .. 0.93

  Alignments for each domain:
  == domain 1    score: 388.9 bits;  conditional E-value: 1.2e-120
                 HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---...---------TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----........------TTHHHHHH----------------.....--S--GSBHHHHH---HHHH--------------SHHHHH...HHHHHHHHHHHHH-------.....TTT---...-----------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--...-----------...-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXXXSB CS
  PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfignlglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvl.......iDfAgstvVHlvggvagLaaalvlgkregrfe..gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara..raavtTllAaaagaltallis.....rlkegk...invlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv...askisggllsgeg.kqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                 +++++ +lv+fmq gfa+l+ag+vr+knv ni++kn+ld++v+ l ++++Gy++a+gk  ++++++g+ +++  + q e   +  +f+fq+afaata+tivsgavaer+ + ay  +s +l+ +vyp+vahwvw+ +g+l+ ++          DfAg++vVH+vgg a+ ++a+vlg+r+grf+    +e++ gh++p++vlGt++Lw+gW+gFN+gs+l++ +  +   ++ vtT+lAaaag++t +l++     r+++ k    ++  ++nG+lAGlV+iTa+c+vvepw+A +iGl+++++ ++g  +  +kl idD++++ +vH ++G+wGl+a g+fa+   +   + ++++gl++g+    l vql++ ++i+++++v++l +++l+k++   rv ee+e  glD ++hg +ay
  MMETSP0890-20130614|1099_1  28 WIMFSGVLVFFMQSGFAMLCAGSVRAKNVKNIMLKNILDACVGALGFWSLGYGVAYGKYHDGNELVGSSFFF-LSGQFERKDAFYNFFFQFAFAATAATIVSGAVAERCGMGAYAGYSWFLTAFVYPVVAHWVWSDKGFLSAFKKEpllnvgtVDFAGCGVVHMVGGAAAGIGAWVLGPRIGRFDpnVPPEEFMGHSAPLTVLGTFILWVGWYGFNGGSTLAIVGYGDLasKVYVTTTLAAAAGGVTNMLLHfqiakRFSDDKhgiYDIAETCNGVLAGLVSITASCSVVEPWAACVIGLIGAFVYTFGS-CTLKKLEIDDAVNATPVHFFCGAWGLIAPGLFARGLGMraaYGNHRTGLFYGGKgVMLSVQLLAFVAITLWVTVTMLPFFILMKAMGIFRVAEEDEVRGLDDSKHGGSAY 446
                 99********************************************************99********6665.5556666667778******************************************************99888788899999*******************************98899*********************************9888777789**************99875111113333333448999**************************************99.8*********************************9877888888999999988889***************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1376.44
//
Query:       MMETSP0890-20130614|1102_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-68  229.1  10.9    2.4e-43  148.2   0.6    3.3  3  PF00183.13 Hsp90 protein
    8.5e-13   48.0   0.1    8.5e-13   48.0   0.0    2.4  3  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    6.1e-06   25.8   0.3    1.7e-05   24.3   0.0    1.9  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase


Domain annotation for each model (and alignments):
>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   1.7e-05     0.076       1      32 [.     254     285 ..     254     287 .. 0.90
   2 !  148.2   0.6   5.3e-47   2.4e-43      88     269 ..     282     464 ..     277     468 .. 0.92
   3 !   77.3   0.6   1.5e-25   7.1e-22     264     496 ..     488     734 ..     471     738 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
                 GGGSHHHHHHHHHHHHTT-SS-EEEEEEE--- CS
  PF00183.13   1 eyleekklkelvkkhsefisypiklvvekeve 32 
                 e+l+e+kl  +vkk+s+f ++p+ + +++ +e
  MMETSP0890-20130614|1102_1 254 EFLDEEKLISIVKKYSNFAAFPVIVGTKRANE 285
                 79*********************998887766 PP

  == domain 2    score: 148.2 bits;  conditional E-value: 5.3e-47
                 EESXXSXGGGSXGGGSXHHHHHHHHH.CCCTTTSXXSEEEEEEEXXXXXEEEEEEEXSSXXSTTTXXXXXXXXSXEEETTEEEESSXTTSSXGGGTTXEXEEEESSSXSSSXCCCCCTXHHHHHHHHHHHHHHHHHHHC.CHTCHHHHHCHHHHHHHCCCXXXXSXCCCHHHHHTTXEEEETTE CS
  PF00183.13  88 llnktkpiWtrnpkdvteeeyaafyk.sltndwedplavkhfsveGqlefkallfvPkraPfdlfeskkkknniklyvrrvfitddaedliPeylsfvkGvvdsedlPlnvsretlqqnkilkvirkklvkkalelike.iaedkedykkfyeefskniklGihedaanrkklakllrfestks 269
                   n++ ++W +np++++++ey++fy+ ++   w+ p +++hf ++  l+ kall++P     +    ++ + ++ ly r+v+i   + dl+P++l fv+GvvdsedlPl +sre  q   +l+ ++  lv+k l +++e  ++d+e+y +fy +f   +k G+  d + r  +akll f+s++ 
  MMETSP0890-20130614|1102_1 282 RANEIDALWAKNPNEINDDEYNKFYRfAFKSAWDTPTYIHHFRADAPLDIKALLYIPSFHT-ERAGMNRLEPQVSLYSRKVLIEGPCRDLLPDWLRFVRGVVDSEDLPLSISREKSQDAALLRKVKDVLVRKLLRFLHEkATKDREKYLNFYTDFNVFLKEGLCSDFDRRLDIAKLLFFDSSRD 464
                 6799*********************9568889*************************8543.44556677889**************************************************************886516689*************************************976 PP

  == domain 3    score: 77.3 bits;  conditional E-value: 1.5e-25
                 EEETTEEEEEEEHHHHHHCSXT.TXXEEEEEXXXXHHHHCCSCCHHHHHHTTXXEEEXXSCCHHHHHHCHSBXXXXEEEETTBX.XXXXXXH.........HHHHHHHH..HHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXXXXXXXXHHHHHHHHHHHXXTSXSSSSXXEEEEEXTTSHHHHHHHHHHHH......TTTXHHHHHHHHHHHHHHHHHXXXXXSXTTTXXXHHHHHHTTTTH CS
  PF00183.13 264 festksedelvslkdyvtrmke.eqkkiyyitGeskkqvekspflerlkkknyevlyltdpvdeyaiqqlkefegkklvnvtkeGleleese.........eekkkree..lkeefeeltkllkeiledkvekvvvsnrlvdsPcvlvtskyGWsanmerimkaqalrdssksaymsskktleinPkhpiikelrkrvee......dkedksvkdlvvllyetallesGfsledpkefasrierliklgls 496
                 +e+ k    l s+++y++r+ + +++kiy++   s++++  sp+ e +kk n e l++ +++d+++++++ +++++ +v+      ++ +++         +ekk+++   + +++e l+k++ + l d++ +v  +++l+dsP+v++ ++   s+ + r+m   + +++ +s      ++l in khpii  l++  ++       ++ +  ++ +  l + al+ +G  ++dp++  sr++  ++ +ls
  MMETSP0890-20130614|1102_1 488 HETEKLLARLSSFDEYISRLSAdDDNKIYFLQAPSREAALASPYYEPFKKTNRECLFVYNTIDDFVMSNIGKYNDRDIVHAEAYSPNISDDDdenkqeekdSEKKEKKTrlDSAQIEALAKWMTTELPDRLTSVESTSKLTDSPAVVTDAE---SGAIRRMMAHASQHNAGISIPPLPPQKLLINAKHPIITSLHTLIQDlpidstSDQAQLARHAANQLLDNALVAAGL-MDDPRSMLSRLNFFLETALS 734
                 56667778899********98516789**************************************************99766555555444400000000044433333112456899*****************************9998...557899999888889999999999999***********99886543111110233344577888999*******96.799*9999999988888776 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.47   2.1e+03      83     115 ..      35      63 ..      23      80 .. 0.51
   2 !   48.0   0.0   1.9e-16   8.5e-13       4     122 ..      93     236 ..      89     249 .. 0.71
   3 ?   -2.5   0.4      0.72   3.3e+03      95     123 ..     590     618 ..     583     630 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.47
   PF13589.1  83 klgrkvtviskkegeks....tltldvekiekeekwd 115
                 +   ++ v+s + +e++    t++++ ek       +
  MMETSP0890-20130614|1102_1  35 S---QLRVFSSATNEAKeketTAEINKEKA-----AE 63 
                 3...44555554444441102333444333.....33 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 1.9e-16
   PF13589.1   4 edAiaelvdNsldAdatn..................vkisidedkkekseisieDnGkGmskeelvnal.klgr..sskdeek......eektlGrkGiGmklAslklgrkvtviskkegeks..tltldvekiekeekwdlkelese 122
                 e  + elv N+ dA  +                   v i++d+++   +ei+++D G Gm  eel ++l +++   s+k+ e+      ++  +G++G+G  ++++++g+kvtv+sk+   +s   +   ++  +  e+ +l +le +
  MMETSP0890-20130614|1102_1  93 EIFVRELVSNACDALEKArqranagkqladpsealeVRITVDKNQ---KEIIFQDGGIGMRREELAENLgTIALsgSRKYVESlqdkdsNASIIGQFGVG-FYSAFMVGDKVTVESKSAVPSSdpGVACRWSSSDGAETFELVDLEPN 236
                 55689********76555557777889999999999999999985...8***************99955344441133332222222224555*******.99**************9966663455555555555555555555555 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.72
   PF13589.1  95 egekstltldvekiekeekwdlkelesee 123
                 e+++++++ld+ +ie+  kw  +el+++ 
  MMETSP0890-20130614|1102_1 590 EKKEKKTRLDSAQIEALAKWMTTELPDRL 618
                 34555888999999999999888776654 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.7e-09   1.7e-05      10     107 ..      96     247 ..      92     251 .. 0.75
   2 ?   -2.3   0.0      0.72   3.3e+03       6      21 ..     697     712 ..     693     713 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.7e-09
                 HHHHHHHHHHHHHHH..............SEEEEEEEEECTCEEEEEEE-----TH.............HHHHHHCSTTTCCSC............SSGGGTT----THHHHHHCCEEEEEEEEECTC................................T-CEEEEEE CS
  PF02518.21  10 vselvdNavkatees..............geievrvkreegelvieVeDnGiGipe.............edlervfepffqtdd............dsrkvggtGlGlsivkklvellggeieveske................................ggGttvtlr 107
                 v+elv+Na +a e+                 +evr++ ++++ +i  +D GiG+ +                           +            +++ +g++G+G++++  + +++ +e    sk                                  +Gt+v++ 
  MMETSP0890-20130614|1102_1  96 VRELVSNACDALEKArqranagkqladpsEALEVRITVDKNQKEIIFQDGGIGMRReelaenlgtialsG-------------SrkyveslqdkdsNASIIGQFGVGFYSAFMVGDKVTVE----SKSavpssdpgvacrwsssdgaetfelvdlepnsiARGTKVRIA 247
                 7999999999999999999**********999999999999***************77775555544430.............22333555555568888999********9999998887....22223355667777777777777777777777777777777765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHH CS
  PF02518.21   6 lrqivselvdNavkat 21 
                 +r++ ++l+dNa+ a+
  MMETSP0890-20130614|1102_1 697 ARHAANQLLDNALVAA 712
                 689999******9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:01.07
# Mc/sec: 1652.81
//
Query:       MMETSP0890-20130614|1104_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-17   62.6   0.2    3.3e-17   61.8   0.1    1.4  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.042   13.0   1.6      0.048   12.8   0.4    1.5  2  PF01184.14 GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.1   4.9e-21   3.3e-17       1      63 [.      20      80 ..      20      81 .. 0.97

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 4.9e-21
                HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHH CS
  PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraey 63
                ++Y+ L+v++++s  +Ik+aY++++l++HPDkn++    a + f+++++Ay+vL d e +  y
  MMETSP0890-20130614|1104_1 20 NFYQMLDVSRGSSPLDIKRAYKRMSLELHPDKNPSAT--AVDEFAKLKDAYDVLMDTEMKDVY 80
                79***********************************..*******************99888 PP

>> PF01184.14  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4     7e-06     0.048     111     155 ..      97     144 ..      83     153 .. 0.70
   2 ?   -2.9   0.0      0.45   3.1e+03     113     124 ..     289     300 ..     283     310 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7e-06
  PF01184.14 111 eqlenaiGlyLigWfiftllllla...tlkstvalfllfftLdltfll 155
                  ++  +i+++ ++W+i+t++l+++   ++  +++++ l+++  + +ll
  MMETSP0890-20130614|1104_1  97 YRMLLEITVFYVAWGIMTFMLTMGkssAVARQWTFTGLIAMFVVEVLL 144
                 45667899**************97222566667777666666665554 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.45
  PF01184.14 113 lenaiGlyLigW 124
                  ++ +GlyL++ 
  MMETSP0890-20130614|1104_1 289 KQSNLGLYLMIA 300
                 455666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1049.67
//
Query:       MMETSP0890-20130614|1106_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-42  144.2   0.1    1.4e-42  143.8   0.0    1.2  1  PF01245.15 Ribosomal protein L19


Domain annotation for each model (and alignments):
>> PF01245.15  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.0     1e-46   1.4e-42       9     112 ..       6     112 ..       1     113 [. 0.92

  Alignments for each domain:
  == domain 1    score: 143.8 bits;  conditional E-value: 1e-46
                 CCC-...-.-S-------EEEEEEECC---BEEEEEE---EEEEE------EEEEE--------EEEEETTTTTEEEEEECE----SSSS-GGGCCTTSHHHHHHS- CS
  PF01245.15   9 eeql...kkdlpefrvGdtvkvevkikegekeriqafeGvviairnkginksftvRkisqgvgvervfplysplikkievvkrgkvrrakLyYLrklsgkaarikek 112
                 ++q+     d p f++Gd + v+v+i+eg+++riq+f+Gv+ia++++g++++ftvRk+s+g+gver+fplyspl+k i v++rg+vrr+kLyYLr+l+gk+arikek
  MMETSP0890-20130614|1106_1   6 ASQMakyDIDHPFFQPGDALVVDVEITEGSTTRIQKFAGVCIAKKGSGTTQTFTVRKMSAGIGVERTFPLYSPLVKGIAVTRRGSVRRSKLYYLRELTGKSARIKEK 112
                 4444221457899********************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.45s 00:00:00.84 Elapsed: 00:00:00.71
# Mc/sec: 523.15
//
Query:       MMETSP0890-20130614|1105_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-30  103.3  15.0    8.1e-30  103.3  10.4    1.8  2  PF03357.16 Snf7
  ------ inclusion threshold ------
        5.4    7.0   7.0         14    5.7   0.2    3.5  4  PF13776.1  Domain of unknown function (DUF4172)
          7    6.6  14.7        8.2    6.4   3.7    2.6  2  PF10303.4  Protein of unknown function (DUF2408)


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3  10.4   1.8e-33   8.1e-30       4     169 ..      32     198 ..      30     200 .. 0.96
   2 ?    0.2   0.3     0.085   3.9e+02     135     153 ..     206     224 ..     197     227 .] 0.62

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 1.8e-33
  PF03357.16   4 lsLrkaerelekkqeslekkikkleaelkklakkgn.kdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda..deedEeeldaeLdaLeqelgdeelesvelpsvPse 169
                 ++++ ++r+l+++ ++l++++k+l ae+kk ak+g+ ++++++l+kq++++++q+d+l+g++a++ + a+++  + sn ++++a  ++ kam +mn +m  +k+  ++++++++ +k+++++e++++ l+da  ++e E+e  a++d++++e+g++   +++l ++P +
  MMETSP0890-20130614|1105_1  32 KEVKSSQRDLDRELRELDRREKQLVAEIKKEAKSGRsEKAVKILAKQLVQLRNQRDRLYGTRAHVGALASHATAMASNVAIADAIGSAGKAMGKMNTTMEKQKVGLTLQQFQKESAKMNMTEEMMGDMLSDAfdTDETEAEEAAVVDQVLAEVGIDL--TKDLQDAPMA 198
                 578999****************************996788899******************************************************************************************************************..9999999965 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.085
  PF03357.16 135 deedEeeldaeLdaLeqel 153
                 ++ +Ee + + Ld+L+++l
  MMETSP0890-20130614|1105_1 206 NSKEEESTSKQLDDLQAQL 224
                 5666666667777776665 PP

>> PF13776.1  Domain of unknown function (DUF4172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2    0.0031        14      15      57 ..      38      80 ..      32      82 .. 0.90
   2 ?    3.9   0.0     0.011        51      18      49 ..      75     106 ..      71     120 .. 0.72
   3 ?    2.0   0.3     0.045     2e+02      27      58 ..     117     148 ..     105     173 .. 0.73
   4 ?    0.3   0.1      0.15   6.9e+02      29      65 ..     156     172 ..     142     212 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0031
   PF13776.1 15 seklepllrevrekqgkLlGkleslgkdekeeavldtllaevv 57
                +++l+ +lre+ +++++L++++++  k+ ++e ++++l +++v
  MMETSP0890-20130614|1105_1 38 QRDLDRELRELDRREKQLVAEIKKEAKSGRSEKAVKILAKQLV 80
                678999*****************************99998877 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.011
   PF13776.1  18 lepllrevrekqgkLlGkleslgkdekeeavl 49 
                 l+++l ++r+++ +L+G  +++g   ++ +++
  MMETSP0890-20130614|1105_1  75 LAKQLVQLRNQRDRLYGTRAHVGALASHATAM 106
                 78999****************99765544433 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.045
   PF13776.1  27 ekqgkLlGkleslgkdekeeavldtllaevvk 58 
                  + gk +Gk++++ +++k  ++l+++ +e  k
  MMETSP0890-20130614|1105_1 117 GSAGKAMGKMNTTMEKQKVGLTLQQFQKESAK 148
                 56788888888888888887777777666544 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.15
   PF13776.1  29 qgkLlGkleslgkdekeeavldtllaevvkssaIEge 65 
                  g +l                    +++ ++ + E e
  MMETSP0890-20130614|1105_1 156 MGDML--------------------SDAFDTDETEAE 172
                 33333....................333333333332 PP

>> PF10303.4  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.3    0.0046        21      14     125 ..      43      90 ..      21      96 .. 0.52
   2 ?    6.4   3.7    0.0018       8.2      29     124 ..     125     227 .]     110     227 .] 0.72

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0046
   PF10303.4  14 ekLisirrsllslatsakkekskeelaeelkklkeeLkeieskrdedGkFvssetgkvlekgqevlngllddCnnliedlseqkneelkldeklqeiYeqLldikttLenLl 125
                  +L ++ r                                                                  +l+++++++ + + + +++++ + +qL++++++ ++L 
  MMETSP0890-20130614|1105_1  43 RELRELDRREK---------------------------------------------------------------QLVAEIKKEAK-SGRSEKAVKILAKQLVQLRNQRDRLY 90 
                 34444444444...............................................................44445444433.44555555555555555555555555 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0018
   PF10303.4  29 sakkekskeelaeelkklkeeLkeieskrdedGkFvsse..tgkvlekgqevlnglldd.Cnnliedlseqkne...elkld.eklqeiYeqLldikttLenL 124
                 + +++++k+++  +l+++++e ++++ + +  G  +s+   t++++ + ++v++++l +   +l++dl+        e++l+ ++ ++  +qL d++ +L+ L
  MMETSP0890-20130614|1105_1 125 KMNTTMEKQKVGLTLQQFQKESAKMNMTEEMMGDMLSDAfdTDETEAEEAAVVDQVLAEvGIDLTKDLQDAPMAsikENTLNsKEEESTSKQLDDLQAQLNAL 227
                 344555667999*************9999999999999888555555558888887766268*****998765544433444144456778888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1393  (0.101887); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.48s 00:00:01.03 Elapsed: 00:00:01.04
# Mc/sec: 523.05
//
Query:       MMETSP0890-20130614|1108_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-20   71.5   0.2    6.2e-19   67.9   0.2    2.0  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.2   4.6e-23   6.2e-19      29     275 ..      51     338 ..      47     340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 4.6e-23
  PF01062.16  29 silkellvflllyllvtliy.......ifeklvkyklsalpftliplaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde.....rrrllrrtiayavllqvllrdisaavkkr...................lealveaglmteeee.kle..ks..knkpywvpivwaesl..qkarkegr.lddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqdeldlvt...plltvlqfyffvglekvaeeLenPFG 275
                 ++l++ l f+l+++++t i        ++ + v +    l +++++  Ls+lL+Fr+n++y+R+w a + +G+l n   ++ar ++ l +++d       r  +r++ia + + ++ lr+ + a +                      ++++ + l+ +e    +e  +s    +p+++   +   l   +a ++gr     +++a++++ln+  +a g l +i     P  Y ++v++++ ++ ++lp++l + l +v     +++   ++ ++  +++a    +PF+
  MMETSP0890-20130614|1108_1  51 RVLPRALGFALWAFIITSILqneigrgLHLSHVGPGVGVLLHSILGGFLSLLLAFRTNQSYNRYWTATEAFGELRNSLVTVARKMAYLNDSEDAadkriYRATVRHLIAIPTAIKHYLRGDDDALDDDtqkvssinpdtssfdtdafRQEYI-SVLNLQELTdLIEirNSfgVPPPHALFASIYFLLrpVRALDDGRyARVALWSAIENSLNKAATAYGVLKTIRHYQHPRSYALHVRRFLLVWLVTLPIALASILAFVPtgaAFVVGACAWAMYSTDELAYLVGQPFD 338
                 6899**************9999**9998888889999999899******************************************99999988899999999999999************99988766678899999988888776534444.33344444434445444455557777777777776678899999888889999***********************************************966655312245556667788888888887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:00.93
# Mc/sec: 1321.86
//
Query:       MMETSP0890-20130614|1109_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-83  279.0   0.0    2.7e-82  276.2   0.0    2.1  1  PF00501.23 AMP-binding enzyme
  ------ inclusion threshold ------
      0.051   12.6   0.2       0.11   11.5   0.1    1.6  1  PF10399.4  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.2   0.0     4e-86   2.7e-82      15     417 ..       1     484 [.       1     485 [. 0.90

  Alignments for each domain:
  == domain 1    score: 276.2 bits;  conditional E-value: 4e-86
                 HHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTTECCS-EECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTS........EEEEES-.TTCCHHCTTTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.............................................................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH..CCH---EBSTTTEEEE.............EBSTT.-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTT...EEE---EEEE-TT....--EEEE--GGGEEE--.--EEEHHHHHHHHHTSTTEEEEE CS
  PF00501.23  15 gLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivrtdkeedsvgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpdd........rvlsllp.lhfdgsilellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek.............................................................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdee.tkpgsiGrplpgvevki.............vdeeg.kevppgevGEllirgpgvakGYlkdpeltaeafdedgw...lyrTGDlgrlded....GyleiiGRkkdqikir.GeniepgeiEsallehpgvaeaa 417
                 +Lr++Gvk+gdrVa++++n++ew  a++++  aGa++vp+y +  +++ +yil+ds+a++l++  +++ ++ ++a++  ak+  ii+ ++  ++s  + e  l+++ ++++  ++++     +dla++iyTSGtTG+PKGV lth+nll+++  i++    + d         r+ls+lp  h++g+ +el  + ++Ga+v l+   +     ++l d+++ k+tvl +vp++++++l++  k                                                             ++   + ++ + sgg++++p++ ++l++ +   ++ ngYGltEt++v ++  + d++ + pgsiGr+lpgv+++i             v   + +e +pge+GE+++++pg+++GY+++p++t+++++ d     +++TGD g   +      +++++GR+k+q k++ G+++ p++iE+a +++ ++++++
  MMETSP0890-20130614|1109_1   1 MLRSMGVKRGDRVAVISKNRVEWATAAYGTYGAGAAFVPMYEQQQPQDWEYILRDSQASILFVARKDQLEIAAKAAEASAKSLGIICFEE--NESFMRLETALDQVVIPQDVYDDIPHA---EDLATLIYTSGTTGEPKGVELTHKNLLWNALIIRQESLANMDRipeppreiRTLSILPwAHIFGQSCELHSMTANGAAVALAGDAT-----TFLTDCKETKPTVLLAVPALYNRILDNFGKakshmpawkqrladralalgdkmarskfnvysekdalqnpplnfwekvqykildklilskvRDALGGDIKCLGSGGAAIPPQTRQFLQAIG--LEFANGYGLTETSPVLSYEHCLDPQnRLPGSIGRALPGVKIRIavdcddsnddfthVAVRTiNEAAPGEPGEIVVSSPGLMRGYWNKPQATNKVIFLDEQgerWFKTGDRGICEAIqgagLHIRLVGRIKEQYKLSnGKYVVPTPIEEAFARSRFISQVF 484
                 599*******************************************************************************99999864..234445555555555555555555555...****************************9988877766655556667888********8888889999999999999999998666.....8******************************************************************************************9999******************98888655..9***********************99****************95554444444444456789999******************************999999**********99887777789*************66********************985 PP

>> PF10399.4  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.7e-05      0.11      18      40 ..      24      46 ..      22      47 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.7e-05
                HHHH---------HHHHHHHTSS CS
   PF10399.4 18 ATaavgaVGaaaaawPlIdqmnP 40
                ATaa g+ Ga+aa +P+  q +P
  MMETSP0890-20130614|1109_1 24 ATAAYGTYGAGAAFVPMYEQQQP 46
                9***************9777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:01.44
# Mc/sec: 1091.67
//
Query:       MMETSP0890-20130614|1112_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       985  (0.0720451); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.91
# Mc/sec: 1824.92
//
Query:       MMETSP0890-20130614|1113_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-50  169.0   0.1      1e-29  102.7   0.0    2.0  2  PF13306.1 Leucine rich repeats (6 copies)
      3e-19   68.4   0.0    1.9e-05   24.2   0.0    4.0  4  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
        0.2   11.7   0.0        0.2   11.7   0.0    3.8  5  PF05593.9 RHS Repeat
        1.6    8.2   4.3        7.1    6.0   0.1    3.1  5  PF06364.7 Protein of unknown function (DUF1068)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   2.9e-33     1e-29       1      88 [.       3      90 ..       1      90 [. 0.81
   2 !   70.6   0.0   2.5e-23   8.4e-20       1      69 [.      72     140 ..      72     141 .] 0.72

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 2.9e-33
   PF13306.1  1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksini 88
                t+Ig++aF++c++lt++t+p  +t+Ig++aF++c+sl+++tlp  lt+ig+ aF +c+slt++t+p  lt+ig +aF +c+sl++i++
  MMETSP0890-20130614|1113_1  3 TTIGDEAFRDCTSLTQLTLPAGLTTIGNFAFCECTSLTQLTLPVGLTTIGQDAFRSCTSLTELTFPAGLTTIGRYAFHGCTSLTQITL 90
                5788888888888888888888888888888888888888888888888888888888888888888888888888888888888875 PP

  == domain 2    score: 70.6 bits;  conditional E-value: 2.5e-23
   PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssl 69 
                 t+Ig+yaF++c++lt+it+p  +t+I ++aF++c+sl+++ lp  lt+ige aF +c+slt++t+p  l
  MMETSP0890-20130614|1113_1  72 TTIGRYAFHGCTSLTQITLPAGLTTIVACAFRSCISLTQVILPAGLTTIGEAAFIGCTSLTQLTLPAGL 140
                 567777777777777777777777777777777777777777777777777777777777777777655 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.1e-08   3.9e-05      13      56 ..       2      44 ..       1      45 [. 0.97
   2 !   24.2   0.0   5.5e-09   1.9e-05      13      56 ..      48      90 ..      47      92 .. 0.97
   3 !   22.0   0.0   2.7e-08   9.3e-05      13      56 ..      71     113 ..      68     116 .. 0.96
   4 !    8.5   0.0   0.00044       1.5      37      56 ..     117     136 ..     115     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.1e-08
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+d+aF ++++L+ L L    l++i   af  ++sL++L L
  MMETSP0890-20130614|1113_1  2 LTTIGDEAFRDCTSLTQLTLP-AGLTTIGNFAFCECTSLTQLTL 44
                89*******************.********************98 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 5.5e-09
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+++aF ++++L++L +    l++i + af+g++sL+++ L
  MMETSP0890-20130614|1113_1 48 LTTIGQDAFRSCTSLTELTFP-AGLTTIGRYAFHGCTSLTQITL 90
                89*******************.*******************988 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 2.7e-08
   PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 l++i+  aF+g+++L+ + L    l++i ++af ++ sL+++ L
  MMETSP0890-20130614|1113_1  71 LTTIGRYAFHGCTSLTQITLP-AGLTTIVACAFRSCISLTQVIL 113
                 899******************.******************9987 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00044
   PF13855.1  37 lksispeafkgLpsLreLnL 56 
                 l++i + af g++sL++L L
  MMETSP0890-20130614|1113_1 117 LTTIGEAAFIGCTSLTQLTL 136
                 67788888888888888876 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.16   5.5e+02      28      38 .]      16      26 ..      10      31 .. 0.70
   2 ?   -1.8   0.1         1   3.4e+03       7      17 ..      39      49 ..      38      52 .. 0.53
   3 ?   11.7   0.0   5.9e-05       0.2       7      38 .]      62      95 ..      62      95 .. 0.96
   4 ?   -1.9   0.0       1.1   3.8e+03       7      18 ..     108     119 ..     108     120 .. 0.59
   5 ?   -0.3   0.1      0.34   1.2e+03      28      38 .]     131     141 .]     129     141 .] 0.79

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.16
   PF05593.9 28 lTaltdpdGtt 38
                lT+lt p+G t
  MMETSP0890-20130614|1113_1 16 LTQLTLPAGLT 26
                55556665543 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1
   PF05593.9  7 LtevtdatGrv 17
                Lt+ t + G +
  MMETSP0890-20130614|1113_1 39 LTQLTLPVGLT 49
                44444444444 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 5.9e-05
   PF05593.9  7 LtevtdatGrvt..tYtYDaaGrlTaltdpdGtt 38
                Lte t + G +t  +Y+  +   lT++t p+G t
  MMETSP0890-20130614|1113_1 62 LTELTFPAGLTTigRYAFHGCTSLTQITLPAGLT 95
                899**********99****************986 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.1
   PF05593.9   7 LtevtdatGrvt 18 
                 Lt+v  + G +t
  MMETSP0890-20130614|1113_1 108 LTQVILPAGLTT 119
                 556666666665 PP

  == domain 5    score: -0.3 bits;  conditional E-value: 0.34
   PF05593.9  28 lTaltdpdGtt 38 
                 lT+lt p+G t
  MMETSP0890-20130614|1113_1 131 LTQLTLPAGLT 141
                 78889888875 PP

>> PF06364.7  Protein of unknown function (DUF1068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.029        98      50      71 ..      12      34 ..       4      36 .. 0.76
   2 ?    6.0   0.1    0.0021       7.1      48      71 ..      33      59 ..      25      66 .. 0.74
   3 ?   -0.4   0.1       0.2   6.9e+02      50      65 ..      81      96 ..      68     111 .. 0.75
   4 ?    0.6   0.2       0.1   3.4e+02      43      60 ..      96     114 ..      77     133 .. 0.51
   5 ?   -0.9   0.0      0.27   9.3e+02      44      63 ..     121     140 ..     109     141 .] 0.78

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.029
   PF06364.7 50 dcsalplltlpkelsn.asfedc 71
                dc +l+ ltlp +l+  ++f+ c
  MMETSP0890-20130614|1113_1 12 DCTSLTQLTLPAGLTTiGNFAFC 34
                9**********999742455544 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0021
   PF06364.7 48 dcdcsalplltlpkelsn...asfedc 71
                 c+c +l+ ltlp +l+     +f  c
  MMETSP0890-20130614|1113_1 33 FCECTSLTQLTLPVGLTTigqDAFRSC 59
                6************99864111456666 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.2
   PF06364.7 50 dcsalplltlpkelsn 65
                 c +l+ +tlp +l+ 
  MMETSP0890-20130614|1113_1 81 GCTSLTQITLPAGLTT 96
                5999999999988864 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.1
   PF06364.7  43 scpacdc.dcsalplltlp 60 
                 +  ac    c +l+ + lp
  MMETSP0890-20130614|1113_1  96 TIVACAFrSCISLTQVILP 114
                 2233332135555555555 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.27
   PF06364.7  44 cpacdcdcsalplltlpkel 63 
                   a    c +l+ ltlp +l
  MMETSP0890-20130614|1113_1 121 GEAAFIGCTSLTQLTLPAGL 140
                 55667789999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 563.14
//
Query:       MMETSP0890-20130614|1117_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   16.7   1.5     0.0085   15.3   1.4    1.4  2  PF00529.15 HlyD family secretion protein
  ------ inclusion threshold ------
       0.01   15.7   1.6      0.026   14.4   1.1    1.6  1  PF00684.14 DnaJ central domain
       0.26   10.8   3.1        0.7    9.4   1.2    2.1  2  PF13666.1  Domain of unknown function (DUF4151)


Domain annotation for each model (and alignments):
>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.65     3e+03     202     231 ..      64      92 ..      62     107 .. 0.81
   2 !   15.3   1.4   1.9e-06    0.0085     122     190 ..     143     210 ..     115     224 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.65
                 ----EEESEEEE------EEEEEEEE-TTS CS
  PF00529.15 202 llgvvpfedvevdanlketqlrlvrpgqka 231
                 +++ + ++d+++  + k+ ++r+v +g +a
  MMETSP0890-20130614|1117_1  64 ATSFL-EQDAYYLVRWKSEEARIVSIGSEA 92 
                 56666.889999999999999999998876 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.9e-06
                 -S--.-----BSS-B------.---S-SEEEEEESSEEEEEEE-HHHHHHHHHHHH-----B----EE-E CS
  PF00529.15 122 lpaslgsikasqatlgalltn.lqaqglaakaqldeaklqlaqtaaelarsirapaqgervqeesklrsv 190
                 l++ +g++k +qa  +++lt   ++++ aa++++d  + ++++ + +l+rs+r+++++  v+ ++++++ 
  MMETSP0890-20130614|1117_1 143 LTQVQGQVKDAQAIWDQELTSlAEEEANAARSKIDDEWSNFSREQLQLGRSLREQVDI--VIIGGDEDNT 210
                 55556****************9999999*****************************9..6665555555 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.1   5.7e-06     0.026      15      53 ..     229     261 ..     220     266 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.7e-06
  PF00684.14  15 vktCkkCnGsGvvvkeqrapggvvqsqqtCekCkGkGki 53 
                 ++ C+ CnG+G++ + +        +q +C+ C+G+G  
  MMETSP0890-20130614|1117_1 229 KPACRLCNGKGYILRFN------GAEQLPCNWCNGTGVC 261
                 56788899998877655......4778888888888865 PP

>> PF13666.1  Domain of unknown function (DUF4151)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   8.4e+02      77     100 ..      99     121 ..      95     136 .. 0.78
   2 ?    9.4   1.2   0.00015       0.7      30      72 ..     171     218 ..     153     225 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.19
   PF13666.1  77 eglerveelenkkdlirskleklk 100
                 e+ +rv++le++k lir   ++++
  MMETSP0890-20130614|1117_1  99 ENSRRVTSLEEAKSLIRLL-RRQL 121
                 6889999999999999855.4444 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00015
   PF13666.1  30 a.kdnideEWeaFqkei....revtskstqivaeeqeeneverqlkEi 72 
                 a   +id EW++F +e     r ++++ + ++   +e+n+ e++++E 
  MMETSP0890-20130614|1117_1 171 AaRSKIDDEWSNFSREQlqlgRSLREQVDIVIIGGDEDNTNEQDDDES 218
                 44889*********9976777777777777777889999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 917.46
//
Query:       MMETSP0890-20130614|1119_1  [L=993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-10   40.1   0.1    6.2e-10   38.9   0.1    1.5  1  PF02141.16 DENN (AEX-3) domain


Domain annotation for each model (and alignments):
>> PF02141.16  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   4.5e-14   6.2e-10      85     168 ..     579     662 ..     573     673 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.5e-14
  PF02141.16  85 leelfrcLsienvlqlfeavLlErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslldvlsaPtPfiiGvesslle 168
                 l +l++ L++  vl+ ++a+L+E  +++  ++ a L++++ al++l  Pl+ + + i vlp+++ d+l++P+P ++Gv+++  e
  MMETSP0890-20130614|1119_1 579 LPTLLKRLRLGIVLKALAALLAEVTVVVECQDEAELSACVLALLTLAKPLHPAGPLIVVLPSRFDDYLDSPVPVLVGVQRAPIE 662
                 67899**************************************************************************98666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.41s 00:00:01.82 Elapsed: 00:00:01.12
# Mc/sec: 2105.83
//
Query:       MMETSP0890-20130614|1118_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       986  (0.0721182); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.57u 0.35s 00:00:01.92 Elapsed: 00:00:01.37
# Mc/sec: 1605.73
//
Query:       MMETSP0890-20130614|1114_1  [L=1543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-33  113.8   0.0    3.3e-15   56.3   0.0    2.8  2  PF00005.22 ABC transporter
    1.9e-20   73.8   1.0    1.2e-07   31.8   0.0    5.0  3  PF13304.1  AAA domain
    3.4e-20   72.2  25.8    6.4e-14   51.6   3.0    2.8  2  PF12698.2  ABC-2 family transporter protein
    4.2e-09   36.9   5.6    4.5e-06   27.0   0.8    2.7  3  PF13476.1  AAA domain
    2.2e-08   33.4   4.0     0.0011   18.3   0.1    3.1  3  PF13555.1  P-loop containing region of AAA domain
    1.5e-07   30.7   0.9    0.00032   19.8   0.0    3.3  2  PF02463.14 RecF/RecN/SMC N terminal domain
    1.2e-05   24.4   0.7      0.012   14.6   0.0    3.5  4  PF13175.1  AAA ATPase domain
    0.00033   20.3   0.1       0.21   11.4   0.0    3.7  2  PF13558.1  Putative exonuclease SbcCD, C subunit
     0.0014   17.7   0.1        1.1    8.3   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
     0.0017   17.4   0.0        3.1    6.7   0.0    3.3  3  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0083   16.4   0.2       0.62   10.3   0.0    2.7  2  PF13191.1  AAA ATPase domain
     0.0089   16.3   0.0        4.4    7.7   0.0    2.9  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.021   14.6   0.3        3.9    7.4   0.1    2.8  2  PF01926.18 50S ribosome-binding GTPase
      0.068   12.5   0.1        0.3   10.3   0.0    2.1  2  PF00448.17 SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.2e-17   1.1e-14       1     118 []     563     688 ..     563     688 .. 0.91
   2 !   56.3   0.0   3.4e-18   3.3e-15       1     117 [.    1409    1531 ..    1409    1532 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 1.2e-17
                 HHHHHHHTTSS---...---EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--.....-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkpt...egeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk.....tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +T + +ltg++ p+   e ++ + +++  l    +++lr  +g++pq+  lf +lt++e ++++ + k      +++ ++++l+ + l +++++  +s+LSgGqk++++ A al+  +++++LDEPt+
  MMETSP0890-20130614|1114_1 563 TTTISCLTGLMAPDhnlETSVDIFGCN-ILTANGMHRLRstLGVCPQHDILFSKLTLKEHIMFFSRLKGksqiaAERDARNLLRVFHLVDRATH-LGSELSGGQKRKLSTAIALAGSSRMVVLDEPTA 688
                 799*********998777777777644.3556777888888********************9999988799***********************.********************************6 PP

  == domain 2    score: 56.3 bits;  conditional E-value: 3.4e-18
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--........-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22    1 STLlklltgelkptegeievdndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk........tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPt 117 
                  S+L+ +lt+ ++pt+g+ ++ + + +l + + ++++++++ q+++l+++l++ + l+++ +             k +e +l++v l+++++k  +++LSgG+k++++ A+al+ +p+++lLDEP 
  MMETSP0890-20130614|1114_1 1409 SSLFSCLTRVIEPTSGDSKIFG-ISTLTNFSKASMHLSVVNQNNTLWENLSCYDHLKFFARLRLsgqgknadVLKLVETTLAAVELNKHASK-LAGNLSGGMKRKLCCACALVADPRVVLLDEPS 1531
                  89*******************5.5556665556666****************99998887775599999999999*****************.*******************************7 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00045      0.44       2      34 ..     552     582 ..     551     602 .. 0.76
   2 !   31.8   0.0   1.2e-10   1.2e-07     235     298 ..     658     717 ..     610     720 .. 0.85
   3 !   21.9   0.0   1.3e-07   0.00012       3     279 ..    1399    1543 .]    1397    1543 .] 0.63

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00045
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfrdelvlglnld 34 
                  +i G NgsGK++ +++l +l  +   ++l ++
  MMETSP0890-20130614|1114_1 552 FCILGHNGSGKTTTISCLTGL--MAPDHNLETS 582
                 689***************999..5544444444 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.2e-10
   PF13304.1 235 sdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298
                 s+lS G+kr l+ + al+ +    +++++DEp +g++P + r+l++ll++ +  +  l++TTH 
  MMETSP0890-20130614|1114_1 658 SELSGGQKRKLSTAIALAGSS---RMVVLDEPTAGMDPLARRELWTLLRSVRH-NRALLLTTHY 717
                 355******988888888888...************************99988.*********5 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 1.3e-07
   PF13304.1    3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrli 279 
                  ++ G Ng+GKS+l+++l                       + p + d++ + i++   ++   s +       +  ++++                                                                     +            ++ +f+   +l ++ k+ + l+l +  +  +e+++   k   +l                             S G+kr l  ++al  ++   +v+l+DEp +gL+P  +r+l+
  MMETSP0890-20130614|1114_1 1399 GLLGSNGAGKSSLFSCL--------------------TRVIEPTSGDSKIFGISTLTNFS-KASMHLSVVNQNNTLWENL-------------------------------------------------------------------SCY------------DHLKFFARLRLSGQGKNADVLKLVETTLAAVELNKHASKLAGNL-----------------------------SGGMKRKLCCACALVADP---RVVLLDEPSAGLDPVSQRNLW 1543
                  588**************....................55555555555555555555555.4444444444444444444...................................................................222............55555555555555555555555555555555555555544444.............................******766666666666...*****************9996 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   3.0   6.5e-17   6.4e-14     162     344 .]     176     461 ..     146     461 .. 0.81
   2 !   25.6   9.4   5.3e-09   5.2e-06     115     338 ..     883    1256 ..     774    1262 .. 0.59

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 6.5e-17
   PF12698.2 162 laglllfilifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilll.....afglegipfgnlllllllfllfglayialgyllsslfksestaqlvisililllsgfflglfp.....leslp...sflkwifsiiPffslgdgllriitgdlse..............................................................................................illsliiLllfavvylllall 344
                 +a+ l+fi i   ++ +++++v     +++e + ++g++ + yw++ +++d++v+  ++++++++     +f ++g+  + +++++ l+ +++ a ial++    l+ s++ a+l+ +il ++ +++f++l p     l +lp     ++ + +i+P f+++++++   ++  +                                                                                               ++  +++L+  +v+yl+la++
  MMETSP0890-20130614|1114_1 176 FAAQLAFISI---MQHVIVGLVVTHHAKLLESIRMAGLRDSVYWIAHFIADGIVMGCVAAFFIAIiaspgLFRFAGFADSPFGIIFALHWVYIVALIALSFSATVLLPSATIASLFSVILQIFVIVAFFLLAPdnenkLGALPrvsPRVQRAWCILPQFAYSLAVFGFQSNR-IRfcrivatitgqppfrgdkytcnydqdddeyffdyrdakrkyrnalteylnvynatcadddnfstnytaqcsvqgpfsefpqyydqefgrmsdkyLGSLFGMLFFDIVLYLVLAWY 461
                 3332222222...222334445557779**************************9999998888656777666678999999****************************************99*******99988885555455599*****************9999655.445556666666667778888888889999999999999999999999999999999999999999999999999999999999999999999997778888888889999999986 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 5.3e-09
   PF12698.2  115 silnaln.....................................sllqqlnasska......sstaqssaapvnvetlpl........fnksknyasflaglllfilifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllill.lafgl...........................................................egipfg...nlllllllfllfglayialgyllsslfksestaqlvisililllsgfflglfpleslp........................sflkwifs.iiPffslgdgllrii............tgdlse.......illsliiLllfavvy 338 
                  +iln+l+                                     ++   ln+ + +      + +++ +++ v++  l+l        +++ + ++++ ++l +    +++  ++a  iv E++ r++ l+ +sg++++++wl+++++d+++ +i++  +l+ +a +                                                              ++ +     ++l+llf +++++   ++ ++s+ f  ++ + + +++++l ++++ ++l+++   +                        +++ w++  + P   l++ llr++            +    +       ++  +i+L ++av++
  MMETSP0890-20130614|1114_1  883 IILNQLKarsgsldleantnahdhvdvnmtdnhrstmivlrqmlAV---LNLRIDQnvrsvrTLAIIMTPSAVGIIVLSLasvgkldkEEYWSELVNVTVALCIVGSYLVVPGLLAWPIVAERQLRLRNLISISGCDARSFWLGTLISDIALVFISVSALLIaIAASGmafrrrnrtytldfealssnpiyinatapggvldgldqfsainylcdefdddvfcpervNEYDRKlwrSNVWLWLLFPAYAITLPTFSHIMSYGFLEPMICVGAFPVINL-IGFIVGPLVFIIVFSllfggtlngtdaiqivnwnfneimGAFGWLTAvLSPVGNLFVFLLRASglsfipragwtsS----DespnwpsYWACFILLMIQAVIF 1256
                  3333333444444444444444444444444444443333322222...222222234455666666666777776666666777766777777788777777777766666668999**********************************999985444425333356677**********************************99999999999999999877444333344558999************************999999999999.5555555544221111122222233355555555555555566665535577777777777766666655555442....03333334555666666666665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.8   4.6e-09   4.5e-06       5      42 ..     531     572 ..     530     593 .. 0.93
   2 ?   -3.4   0.0       9.1   8.9e+03     156     168 ..     800     812 ..     754     866 .. 0.52
   3 !   11.1   0.0   0.00033      0.32      21      41 ..    1397    1417 ..    1380    1485 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.6e-09
   PF13476.1   5 kNfrsfkdqe.idF...skgltlItGpNGsGKTTildAicla 42 
                 k f+ fk ++ i+F   s+ +++I G+NGsGKTT + +++ +
  MMETSP0890-20130614|1114_1 531 KSFGTFKAVDgISFtiaSSEIFCILGHNGSGKTTTISCLTGL 572
                 679***********************************9865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 9.1
   PF13476.1 156 rleelekeleele 168
                 r+++ ++e++ ++
  MMETSP0890-20130614|1114_1 800 RVSDEDNEIKFAK 812
                 1111122222111 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00033
   PF13476.1   21 ltlItGpNGsGKTTildAicl 41  
                   + + G NG+GK++++ +++ 
  MMETSP0890-20130614|1114_1 1397 CFGLLGSNGAGKSSLFSCLTR 1417
                  68899************9985 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.1e-06    0.0011      13      52 ..     540     578 ..     534     582 .. 0.82
   2 ?   -2.4   0.1       3.2   3.1e+03       3      10 ..    1184    1191 ..    1183    1194 .. 0.81
   3 !   15.0   0.0   1.2e-05     0.012      14      51 ..    1387    1423 ..    1383    1429 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.1e-06
   PF13555.1  13 dghtveidpkgkntlltGasGsGKSTllDAiqtlLvpakk 52 
                 dg +++i++++  + + G++GsGK+T +  ++ l+ p+++
  MMETSP0890-20130614|1114_1 540 DGISFTIASSE-IFCILGHNGSGKTTTISCLTGLMAPDHN 578
                 55567777665.99***********************985 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.2
   PF13555.1    3 rlqlvNWg 10  
                   +q+vNW+
  MMETSP0890-20130614|1114_1 1184 AIQIVNWN 1191
                  589****6 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.2e-05
   PF13555.1   14 ghtveidpkgkntlltGasGsGKSTllDAiqtlLvpak 51  
                  + t+ +d +g+ + l G +G+GKS+l+  ++ ++ p++
  MMETSP0890-20130614|1114_1 1387 NVTFAVD-QGECFGLLGSNGAGKSSLFSCLTRVIEPTS 1423
                  5678888.566999***************999998876 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.3e-07   0.00032      21     200 ..     547     719 ..     528     734 .. 0.78
   2 !    7.1   0.1    0.0026       2.6      28     143 ..    1399    1510 ..    1384    1542 .. 0.56

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.3e-07
                 ----SEEEE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  21 pfsksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislree 200
                   s+++ +i+G+NGSGK+  +  +  ++  +++ +   + +   i   +++ +  + ++ +   ++d  ++  + +  i+     kg+s++  ++   +   v +l+ +a    ++LSgG+k  ++ a+ +A      + +++lDe  a +D   ++++ +ll++ ++n  ++ +++  +
  MMETSP0890-20130614|1114_1 547 A-SSEIFCILGHNGSGKTTTISCLTGLMAPDHNLETSVDIFGCNILT-ANGMHRLRSTLGVC-PQHDILFSKLTLKEHIMFFSRLKGKSQIAAERDARNLLRVFHLVDRATHLGSELSGGQKRKLSTAIALAG----SSRMVVLDEPTAGMDPLARRELWTLLRSVRHNRALLLTTHYMD 719
                 3.455889********************9998877777777766665.56666666666664.333333344444456677777889999********************************99998888775....56699*************************9999999998655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0026
                  EE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E............EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14   28 aivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedke.....lvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGekt 143 
                   ++G+NG+GKs+++  +  v+  +s         ++ i+  ++  + ++a++++ + n++++     +  ++ ++  + r++ +g++   ++  e t + v+   + +++   +LSgG k 
  MMETSP0890-20130614|1114_1 1399 GLLGSNGAGKSSLFSCLTRVIEPTSG--------DSKIFGISTLTNFSKASMHLSVVNQNNTlwenlSCYDHLKFFARLRLSGQGKNADVLKLVETTLAAVELNKHASKLA-GNLSGGMKR 1510
                  579***********999666654433........33344444445555555555555555553433344455556666666666665555555555555554444444443.367777553 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-05     0.012       7      64 ..     525     624 ..     520     643 .. 0.65
   2 ?    2.8   0.0     0.046        45     372     410 ..     680     716 ..     670     718 .. 0.93
   3 ?   -4.4   0.4         7   6.8e+03     279     322 ..     794     821 ..     776     831 .. 0.43
   4 ?    2.8   0.0     0.046        45      27      43 ..    1400    1425 ..    1384    1477 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-05
   PF13175.1   7 kNyrsiksleeinldesln.........viiGeNgsGKttILealeklknrknmlfikk.................................nlklkieg 64 
                 + ++++ks+  ++   +++          i G+NgsGKtt +++l  l  ++++l+++                                   lk+ i++
  MMETSP0890-20130614|1114_1 525 TVNKLYKSFGTFKAVDGISftiasseifCILGHNGSGKTTTISCLTGLMAPDHNLETSVdifgcniltangmhrlrstlgvcpqhdilfsklTLKEHIMF 624
                 5567777777444444333333344444*****************9999999999999866666666666666665555555555555555555555555 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.046
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiitTH 410
                  +++DEP a ++p +++el   L +  +  n  +++tTH
  MMETSP0890-20130614|1114_1 680 MVVLDEPTAGMDPLARRELWTLLRSVRH--NRALLLTTH 716
                 689*************************..********* PP

  == domain 3    score: -4.4 bits;  conditional E-value: 7
   PF13175.1 279 qkllkkklsnlkanekiklneklksrvneinkeykfekkldenn 322
                 ++++ +++s++++++k+    +l                 +++n
  MMETSP0890-20130614|1114_1 794 SSTFAERVSDEDNEIKFAKESQLV----------------MKYN 821
                 333333333333333333222222................2333 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.046
   PF13175.1   27 iiGeNgsGKttILeal.........e 43  
                  + G Ng+GK+++ ++l         +
  MMETSP0890-20130614|1114_1 1400 LLGSNGAGKSSLFSCLtrvieptsgD 1425
                  679*************4444333330 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00021      0.21      32      89 ..     659     703 ..     651     704 .. 0.77
   2 ?    3.9   0.0     0.045        44      63      83 ..    1521    1541 ..    1480    1543 .] 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00021
   PF13558.1  32 tlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 +lSGG+k   +++a+a+A     +       s r+v+LDE+++++D+  +++l  llr
  MMETSP0890-20130614|1114_1 659 ELSGGQK-RKLSTAIALA-----G-------SSRMVVLDEPTAGMDPLARRELWTLLR 703
                 6788888.5555555533.....2.......3589****************9999987 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.045
   PF13558.1   63 sirlvfLDEAFsklDeenias 83  
                   +r v+LDE+ ++lD+ ++++
  MMETSP0890-20130614|1114_1 1521 DPRVVLLDEPSAGLDPVSQRN 1541
                  489999999999999988776 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0034       3.3      17      57 ..     530     571 ..     516     585 .. 0.82
   2 !    8.3   0.0    0.0011       1.1      20      57 ..    1379    1417 ..    1365    1439 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0034
                 EEECHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11  17 vlsvktkegleelaellkd.ktsvlvGqSGvGKSsLinallp 57 
                 + s  t ++++ +++++++ ++ +++G+ G GK++ i  l++
  MMETSP0890-20130614|1114_1 530 YKSFGTFKAVDGISFTIASsEIFCILGHNGSGKTTTISCLTG 571
                 455667888999999999889**************9998875 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0011
                  CHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11   20 vktkegleelaellkd.ktsvlvGqSGvGKSsLinallp 57  
                  +k  e+++++++ +++ ++  l+G+ G+GKSsL   l+ 
  MMETSP0890-20130614|1114_1 1379 AKAVEAVQNVTFAVDQgECFGLLGSNGAGKSSLFSCLTR 1417
                  566788889999998889999************998875 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0032       3.1      14      53 ..     541     580 ..     530     600 .. 0.81
   2 ?    3.0   0.0     0.043        42       4      55 ..     659     711 ..     658     726 .. 0.85
   3 ?    3.1   0.0      0.04        39      25      52 ..    1398    1425 ..    1380    1451 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0032
  PF01078.16  14 aleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseee 53 
                  +  ++a +  + ++G  GsGKt  +++l++l++p ++ e
  MMETSP0890-20130614|1114_1 541 GISFTIASSEIFCILGHNGSGKTTTISCLTGLMAPDHNLE 580
                 566667777778899*****************98866544 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.043
  PF01078.16   4 dvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakr.lpsllpplseeeal 55 
                 ++ G ++ k    ia aG+  ++++  p +G   la+r l +ll ++ ++ al
  MMETSP0890-20130614|1114_1 659 ELSGGQKRKLSTAIALAGSSRMVVLDEPTAGMDPLARReLWTLLRSVRHNRAL 711
                 567888999999*********************99988688888888777766 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.04
  PF01078.16   25 lllvGppGsGKtmlakrlpsllpplsee 52  
                  + l+G+ G+GK+ l ++l+ ++ p s +
  MMETSP0890-20130614|1114_1 1398 FGLLGSNGAGKSSLFSCLTRVIEPTSGD 1425
                  5689***************999776644 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00064      0.62      22      45 ..     549     571 ..     541     712 .. 0.81
   2 ?    3.1   0.0       0.1        97      18      45 ..    1391    1417 ..    1378    1509 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00064
   PF13191.1  22 gsplllvtGpsGiGKSsLlrelak 45 
                 ++ +++++G+ G+GK++ + +l  
  MMETSP0890-20130614|1114_1 549 SE-IFCILGHNGSGKTTTISCLTG 571
                 33.99**************98654 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.1
   PF13191.1   18 rvsegsplllvtGpsGiGKSsLlrelak 45  
                  +v +g+ ++ ++G  G GKSsL  +l +
  MMETSP0890-20130614|1114_1 1391 AVDQGE-CFGLLGSNGAGKSSLFSCLTR 1417
                  467777.7889***********988554 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0045       4.4       3      30 ..     553     580 ..     552     616 .. 0.81
   2 ?    5.3   0.0     0.025        24       3      25 ..    1399    1421 ..    1398    1455 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0045
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefpkkklp 30 
                  ++G  g+GK++ +s l+g   p+ +l+
  MMETSP0890-20130614|1114_1 553 CILGHNGSGKTTTISCLTGLMAPDHNLE 580
                 69***************99988844443 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.025
   PF08477.8    3 vvvGdkgvGKssllsqlvgeefp 25  
                   ++G+ g+GKssl s l++   p
  MMETSP0890-20130614|1114_1 1399 GLLGSNGAGKSSLFSCLTRVIEP 1421
                  589**********9988876666 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.032        31       2      21 ..     552     571 ..     551     668 .. 0.86
   2 ?    7.4   0.1     0.004       3.9       2      21 ..    1398    1417 ..    1397    1454 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.032
                 EEEE--TT---HHHHHHHHC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg 21 
                 ++i+G+  +GK+t i  Ltg
  MMETSP0890-20130614|1114_1 552 FCILGHNGSGKTTTISCLTG 571
                 68****************96 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.004
                  EEEE--TT---HHHHHHHHC CS
  PF01926.18    2 vaivGrpNvGKStLinaLtg 21  
                  ++++G   +GKS+L+  Lt+
  MMETSP0890-20130614|1114_1 1398 FGLLGSNGAGKSSLFSCLTR 1417
                  589***************95 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00031       0.3       3      26 ..     551     574 ..     549     602 .. 0.77
   2 ?   -1.9   0.0       1.7   1.7e+03       6      26 ..    1400    1420 ..    1397    1440 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00031
                 EEEEE-------TTTHHHHHHHHH CS
  PF00448.17   3 villvGlqGaGKTTtlaKLAallk 26 
                 ++ ++G +G+GKTTt++ L  l+ 
  MMETSP0890-20130614|1114_1 551 IFCILGHNGSGKTTTISCLTGLMA 574
                 67899***********99887665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.7
                  EE-------TTTHHHHHHHHH CS
  PF00448.17    6 lvGlqGaGKTTtlaKLAallk 26  
                  l+G +GaGK +  + L ++++
  MMETSP0890-20130614|1114_1 1400 LLGSNGAGKSSLFSCLTRVIE 1420
                  78*******998888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 2.30u 0.41s 00:00:02.71 Elapsed: 00:00:01.63
# Mc/sec: 2268.45
//
Query:       MMETSP0890-20130614|1120_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-13   48.6   0.0    8.4e-13   47.7   0.0    1.4  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
      0.068   13.3   3.6       0.14   12.2   1.7    2.2  2  PF05531.7 Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.2e-16   8.4e-13      21     233 ..     271     489 ..     258     505 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.2e-16
   PF07727.9  21 vfklKlnedgeierykARlVakGftqkegidye..etfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkksea.dkclfvkk...keeeliivllYVDDlliags...skelieelkeeLkkefemkdlgelkyfLgleierkeegillsqekyvkkllkkfkm 233
                 + ++K+  + e    kAR V+ G++  eg++y   +++   v+ ++  l+  + +++k+     Dv+ a+L    + ++Yv    G++   ++++v++    +Yg k a  aW+++l++ + ++gfk+ +  ++ l  ++   ++++ ++ + YVD + ia+s   ++e++++++++L+++  +++  e ++  g +++ +e+ ++ s ++y+++l++++k 
  MMETSP0890-20130614|1120_1 271 ILTKKMAGR-EYLGVKARSVVMGNREIEGLHYFdkDIHRNTVSDDAEVLFYIFCCSHKVIAVFRDVTGAYLLVVDNGNLYVYPLYGMTGL-EPKEVLRKLGMIYGEKRANAAWHDRLQDEFRQEGFKSVDVtEPNLLQREpqgNDKDRCLAMTYVDNIAIASSlgdKSEVLKKAEKNLAARLPLTKEPE-TEWNGCQLTWQEGVLSKSVSAYIERLVEHYKK 489
                 555554443.67789*****************75578988888877777777778888888888***********************999.5999999999**************************9876156666655211344559999********86433388999*************98766.5688**********************998764 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   2.1e-05      0.14      15      55 ..       9      46 ..       4      65 .. 0.78
   2 ?   -4.0   0.0         2   1.4e+04      13      26 ..     159     172 ..     159     184 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.1e-05
   PF05531.7 15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaele 55
                 ++  V+al +++ddv+++ ++   l++kL++q+++L++++
  MMETSP0890-20130614|1120_1  9 SLERIVTALRTELDDVTDKNQQ---LKSKLESQTKTLDTFS 46
                5667799999999999997666...99**********9986 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2
   PF05531.7  13 ikavddkVdalqqq 26 
                 ++++++k  alq++
  MMETSP0890-20130614|1120_1 159 VEQISKKFMALQNH 172
                 56677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      498  (0.0364248); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:01.49
# Mc/sec: 1212.65
//
Query:       MMETSP0890-20130614|1122_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   18.1   0.0     0.0025   17.4   0.0    1.3  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.8e-07    0.0025       1      23 [.      70      96 .]      70      96 .] 0.74

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.8e-07
   PF08373.5  1 ieidGpthFyrns.gvll...gktklK 23
                ie+dGpthF++ s g  +   g tk+K
  MMETSP0890-20130614|1122_1 70 IEVDGPTHFLKCSkGTQRvenGRTKFK 96
                9********555544444556999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:01.21
# Mc/sec: 190.12
//
Query:       MMETSP0890-20130614|1123_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-25   88.9   2.6    3.1e-25   87.7   1.9    1.5  1  PF13424.1  Tetratricopeptide repeat
    1.3e-22   78.8   9.4      1e-12   47.3   0.1    3.0  3  PF13374.1  Tetratricopeptide repeat
      4e-17   60.8   8.3    5.3e-09   35.1   0.6    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.2e-14   52.8   9.2    1.2e-07   30.9   0.9    2.2  2  PF07719.12 Tetratricopeptide repeat
    1.6e-14   52.3   3.1    1.3e-06   27.5   0.4    2.1  2  PF13176.1  Tetratricopeptide repeat
      4e-14   51.8   5.2    1.8e-13   49.7   3.6    1.8  1  PF13414.1  TPR repeat
    1.9e-10   39.6   6.5      2e-05   23.8   0.5    2.1  2  PF13181.1  Tetratricopeptide repeat
    7.4e-10   39.1   7.8    2.2e-07   31.2   2.2    2.0  2  PF13432.1  Tetratricopeptide repeat
    2.8e-08   33.5   3.3     0.0028   18.0   0.5    2.2  2  PF13428.1  Tetratricopeptide repeat
    4.9e-08   32.4   5.9     0.0011   18.9   0.5    3.5  3  PF13431.1  Tetratricopeptide repeat
    6.1e-06   26.0   0.0       0.11   12.8   0.0    2.5  2  PF07721.9  Tetratricopeptide repeat
    8.8e-06   25.7   3.1      0.036   14.4   0.3    2.3  2  PF13174.1  Tetratricopeptide repeat
    6.8e-05   22.4   0.2       0.44   10.5   0.0    2.3  2  PF01535.15 PPR repeat
    0.00034   20.5   0.9     0.0011   18.9   0.6    1.7  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00067   19.3   2.3      0.078   12.7   0.2    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00075   18.4   0.1      0.083   11.7   0.0    2.0  2  PF04910.9  Transcriptional repressor TCF25
    0.00096   18.4   0.4       0.29   10.3   0.0    2.0  2  PF10602.4  26S proteasome subunit RPN7
      0.001   18.0   1.0       0.12   11.2   0.1    2.0  2  PF13429.1  Tetratricopeptide repeat
     0.0046   16.6   1.6       0.28   10.9   0.8    2.1  2  PF13371.1  Tetratricopeptide repeat
     0.0047   17.2   0.2          2    8.7   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
     0.0067   16.3   0.4        3.5    7.5   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat
     0.0079   15.8   0.2       0.81    9.3   0.0    2.1  2  PF10975.3  Protein of unknown function (DUF2802)
  ------ inclusion threshold ------
      0.025   13.5   0.1          3    6.6   0.0    2.0  2  PF08631.5  Meiosis protein SPO22/ZIP4 like
      0.031   13.9   0.2       0.37   10.4   0.2    1.9  1  PF12968.2  Domain of Unknown Function (DUF3856)
      0.036   13.5   0.9        1.7    8.1   0.1    2.1  2  PF00637.15 Region in Clathrin and VPS
      0.047   13.4   0.4       0.81    9.4   0.0    1.9  2  PF11846.3  Domain of unknown function (DUF3366)
      0.057   12.6   0.1        1.2    8.2   0.1    2.4  3  PF12729.2  Four helix bundle sensory module for signal transduction
      0.057   12.9   0.3          1    8.8   0.0    2.0  2  PF04781.7  Protein of unknown function (DUF627)
      0.067   12.3   0.4       0.14   11.3   0.1    1.7  2  PF10516.4  SHNi-TPR
      0.074   12.0   0.1       0.18   10.7   0.1    1.6  1  PF00244.15 14-3-3 protein
      0.098   11.2   0.7       0.95    7.9   0.3    1.7  1  PF12569.3  NMDA receptor-regulated protein 1
       0.14   12.0   0.0        5.7    6.8   0.0    2.2  2  PF13041.1  PPR repeat family


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   1.9   7.3e-28   3.1e-25       1      78 []      11      89 ..      11      89 .. 0.98

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 7.3e-28
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hp++a+ lnnla +l++lg++deA +lye+al +  ++lg++hp++a +lnn a+l++++g+ydeA +++e+Al+i+e+
  MMETSP0890-20130614|1123_1 11 HPHVAAGLNNLAALLKKLGKHDEAKSLYERALRIcEEKLGPNHPNVAQSLNNRADLLEKQGKYDEAMALYERALRIREE 89
                89********************************9999**************************************985 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.078        34      33      42 .]       5      13 ..       2      13 .. 0.77
   2 !   47.3   0.1   2.4e-15     1e-12       1      42 []      14      55 ..      14      55 .. 0.97
   3 !   31.8   1.0   1.9e-10   7.9e-08       1      34 [.      56      89 ..      56      91 .] 0.96

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.078
   PF13374.1 33 rrllGddHPd 42
                ++l G++HP+
  MMETSP0890-20130614|1123_1  5 EKL-GPNHPH 13
                555.*****6 PP

  == domain 2    score: 47.3 bits;  conditional E-value: 2.4e-15
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +aa lnnLA +l ++g+++eA  l+e+al i+++ lG++HP+
  MMETSP0890-20130614|1123_1 14 VAAGLNNLAALLKKLGKHDEAKSLYERALRICEEKLGPNHPN 55
                7899*************************************5 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 1.9e-10
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +a +lnn A +l ++g+y+eA al+e+al ir++
  MMETSP0890-20130614|1123_1 56 VAQSLNNRADLLEKQGKYDEAMALYERALRIREE 89
                799*****************************97 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.9   4.5e-10   1.9e-07       1      32 [.      15      46 ..      15      48 .. 0.93
   2 !   35.1   0.6   1.2e-11   5.3e-09       1      33 [.      57      89 ..      57      90 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 4.5e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a  l+nl++++ klgk+deA   ye+AL++ +
  MMETSP0890-20130614|1123_1 15 AAGLNNLAALLKKLGKHDEAKSLYERALRICE 46
                6789*************************986 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 1.2e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPn 33
                a++l+n++ ++ k+gkydeA + ye+AL+++++
  MMETSP0890-20130614|1123_1 57 AQSLNNRADLLEKQGKYDEAMALYERALRIREE 89
                789**************************9876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   1.0   5.8e-09   2.5e-06       1      32 [.      15      46 ..      15      48 .. 0.93
   2 !   30.9   0.9   2.9e-10   1.2e-07       1      32 [.      57      88 ..      57      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 5.8e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a +l+nl+ ++ klg+++eA+ ++e+Al+++ 
  MMETSP0890-20130614|1123_1 15 AAGLNNLAALLKKLGKHDEAKSLYERALRICE 46
                6789*************************986 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 2.9e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a+ l+n++++++k+g+y+eA +++e+Al++  
  MMETSP0890-20130614|1123_1 57 AQSLNNRADLLEKQGKYDEAMALYERALRIRE 88
                5789************************9976 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.6e-08   6.7e-06       2      34 ..      18      50 ..      17      52 .. 0.91
   2 !   27.5   0.4   3.1e-09   1.3e-06       1      30 [.      59      88 ..      59      90 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.6e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                l+nLa l  +lg++++A +lyeraL++ ++ l+
  MMETSP0890-20130614|1123_1 18 LNNLAALLKKLGKHDEAKSLYERALRICEEKLG 50
                89*********************9999888766 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 3.1e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                +l+n a+l +++g+y++A  lyeraL++++
  MMETSP0890-20130614|1123_1 59 SLNNRADLLEKQGKYDEAMALYERALRIRE 88
                79**********************887765 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   3.6   4.3e-16   1.8e-13       2      68 ..      14      87 ..      13      88 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 4.3e-16
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68
                +A  l++l+  l k+g++deA  +ye+Al+++        pn a+ ++n+A +++k+g +y+eA++ ye+Al+++
  MMETSP0890-20130614|1123_1 14 VAAGLNNLAALLKKLGKHDEAKSLYERALRICeeklgpnhPNVAQSLNNRADLLEKQG-KYDEAMALYERALRIR 87
                57779*************************977777744455566*************.6************986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   1.6e-06   0.00067       2      30 ..      16      44 ..      15      48 .. 0.91
   2 !   23.8   0.5   4.8e-08     2e-05       2      31 ..      58      87 ..      57      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.6e-06
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                + ++nl+ ++++lG++d+Ak+ +e+al +
  MMETSP0890-20130614|1123_1 16 AGLNNLAALLKKLGKHDEAKSLYERALRI 44
                5689***********************88 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 4.8e-08
                --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
                ++++n++d++++ G+yd+A++ +e+al + 
  MMETSP0890-20130614|1123_1 58 QSLNNRADLLEKQGKYDEAMALYERALRIR 87
                789************************985 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     3e-05     0.013      27      65 .]      11      54 ..       3      54 .. 0.86
   2 !   31.2   2.2   5.1e-10   2.2e-07       3      60 ..      21      86 ..      20      89 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3e-05
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal.....alaPddp 65
                +P+ a  l +la +l +lg++deA  l+++al     +l+P++p
  MMETSP0890-20130614|1123_1 11 HPHVAAGLNNLAALLKKLGKHDEAKSLYERALriceeKLGPNHP 54
                3888999999********************99888888888876 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 5.1e-10
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                lA +l ++G+ deA  ++e+al+          P  a+ l ++a++l ++g++deA al+++al++
  MMETSP0890-20130614|1123_1 21 LAALLKKLGKHDEAKSLYERALRICeeklgpnhPNVAQSLNNRADLLEKQGKYDEAMALYERALRI 86
                799999*****************999999999999****************************976 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     2e-05    0.0087       2      32 ..      16      46 ..      15      60 .. 0.81
   2 !   18.0   0.5   6.6e-06    0.0028       5      30 ..      61      86 ..      56      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-05
   PF13428.1  2 eallalarallalGdpdeAiallrralalaP 32
                + l  la++l  lG +deA  l++ral+ + 
  MMETSP0890-20130614|1123_1 16 AGLNNLAALLKKLGKHDEAKSLYERALRICE 46
                56778**********************9553 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 6.6e-06
   PF13428.1  5 lalarallalGdpdeAiallrralal 30
                  +a++l+ +G +deA+al++ral+ 
  MMETSP0890-20130614|1123_1 61 NNRADLLEKQGKYDEAMALYERALRI 86
                579********************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00012     0.053       9      33 ..      11      35 ..       6      36 .. 0.86
   2 !   18.9   0.5   2.5e-06    0.0011       1      32 [.      37      76 ..      37      78 .. 0.76
   3 ?    0.1   0.0       2.6   1.1e+03       1       8 [.      79      86 ..      79      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00012
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P  a  +nnLA ll+++G+++eA+
  MMETSP0890-20130614|1123_1 11 HPHVAAGLNNLAALLKKLGKHDEAK 35
                45557889***************97 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.5e-06
   PF13431.1  1 lyekaleld........PnnadaynnLAelllnnGdleeA 32
                lye+al+++        Pn a+++nn+A ll ++G+++eA
  MMETSP0890-20130614|1123_1 37 LYERALRICeeklgpnhPNVAQSLNNRADLLEKQGKYDEA 76
                57777777655555333666******************99 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 2.6
   PF13431.1  1 lyekalel 8 
                lye+al++
  MMETSP0890-20130614|1123_1 79 LYERALRI 86
                7****986 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     0.001      0.44       2      26 .]      16      40 ..      15      40 .. 0.89
   2 !   12.8   0.0   0.00026      0.11       2      26 .]      58      82 ..      57      82 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.001
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                + l +LA +l  lG +deA  l er
  MMETSP0890-20130614|1123_1 16 AGLNNLAALLKKLGKHDEAKSLYER 40
                56779**************999987 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00026
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                + l ++A +l  +G +deA al er
  MMETSP0890-20130614|1123_1 58 QSLNNRADLLEKQGKYDEAMALYER 82
                66789*****************997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00061      0.26       5      28 ..      20      43 ..      20      44 .. 0.88
   2 !   14.4   0.3   8.3e-05     0.036       6      28 ..      63      85 ..      62      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00061
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la +++klg++deA+ ++er ++
  MMETSP0890-20130614|1123_1 20 NLAALLKKLGKHDEAKSLYERALR 43
                5788889999***********986 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 8.3e-05
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                +a +++k+g++deA++++er ++
  MMETSP0890-20130614|1123_1 63 RADLLEKQGKYDEAMALYERALR 85
                78999***************986 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0     0.001      0.44       4      25 ..      19      40 ..      18      44 .. 0.86
   2 !   10.2   0.0    0.0013      0.54       9      25 ..      66      82 ..      59      87 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.001
  PF01535.15  4 nslIsgyckaGkleeAlelfke 25
                n l   + k Gk++eA +l+++
  MMETSP0890-20130614|1123_1 19 NNLAALLKKLGKHDEAKSLYER 40
                67778899************97 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0013
  PF01535.15  9 gyckaGkleeAlelfke 25
                 + k Gk++eA+ l+++
  MMETSP0890-20130614|1123_1 66 LLEKQGKYDEAMALYER 82
                56799**********98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6   2.6e-06    0.0011      30      84 .]      20      83 ..       5      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.6e-06
                HHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH..HH.HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2 30 alAlclylngeykrAyellrk......leldssslgcry..ll.ArcllklgkydeAiavLeka 84
                +lA  l ++g++++A  l+++      ++l ++++  +      A  l+k+gkydeA a++e+a
  MMETSP0890-20130614|1123_1 20 NLAALLKKLGKHDEAKSLYERalriceEKLGPNHPNVAQslNNrADLLEKQGKYDEAMALYERA 83
                57888889999999999998899999888888884444411334799**************985 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.013       5.4      18      36 ..      28      46 ..      20      49 .. 0.88
   2 !   12.7   0.2   0.00018     0.078      10      34 ..      62      86 ..      55      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.013
                TT-HHHHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlelLl 36
                 gk++eA  lY+ Al +++
  MMETSP0890-20130614|1123_1 28 LGKHDEAKSLYERALRICE 46
                599************9986 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00018
                HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF04212.13 10 kkAveaDeagkyeeAlelYkeAlel 34
                ++A   +++gky+eA  lY+ Al +
  MMETSP0890-20130614|1123_1 62 NRADLLEKQGKYDEAMALYERALRI 86
                55666799**************975 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00019     0.083      36      87 ..      11      62 ..       7      67 .. 0.86
   2 !    7.5   0.0    0.0036       1.5      37      73 ..      54      90 ..      51      91 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00019
   PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnass 87
                +P    +L +l+ ++++ g++ +A  l eraL i+e+ + p+  ++ ++ ++
  MMETSP0890-20130614|1123_1 11 HPHVAAGLNNLAALLKKLGKHDEAKSLYERALRICEEKLGPNHPNVAQSLNN 62
                7888899*******************************99998776666555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0036
   PF04910.9 37 PYHvdtLlqlsevyreqgdfevAndlieraLfilerv 73
                P    +L + ++++++qg++ +A++l eraL i e++
  MMETSP0890-20130614|1123_1 54 PNVAQSLNNRADLLEKQGKYDEAMALYERALRIREEC 90
                555678899999*******************888776 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0087       3.7      35      66 ..      14      45 ..      11      49 .. 0.89
   2 !   10.3   0.0   0.00067      0.29      35      63 ..      56      84 ..      53      91 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0087
   PF10602.4 35 irraledlaehYlkigdleeAlkaysrardyc 66
                ++ +l++la    k g+ +eA  +y+ra+  c
  MMETSP0890-20130614|1123_1 14 VAAGLNNLAALLKKLGKHDEAKSLYERALRIC 45
                6788999********************98766 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00067
   PF10602.4 35 irraledlaehYlkigdleeAlkaysrar 63
                +++ l+++a+   k g+++eA+++y+ra+
  MMETSP0890-20130614|1123_1 56 VAQSLNNRADLLEKQGKYDEAMALYERAL 84
                788999********************964 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       4.8     151     175 ..      20      44 ..      13      49 .. 0.86
   2 !   11.2   0.1   0.00028      0.12     147     175 ..      58      86 ..      46      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.011
   PF13429.1 151 araellrqegqkkkAlrllrralal 175
                  +a+ll++ g++++A  l++ral+ 
  MMETSP0890-20130614|1123_1  20 NLAALLKKLGKHDEAKSLYERALRI 44 
                 679999****************985 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00028
   PF13429.1 147 lfllaraellrqegqkkkAlrllrralal 175
                 + l  ra ll+++g+ ++A++l++ral+ 
  MMETSP0890-20130614|1123_1  58 QSLNNRADLLEKQGKYDEAMALYERALRI 86 
                 668889*********************86 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0046         2      27      63 ..      13      54 ..      10      61 .. 0.74
   2 !   10.9   0.8   0.00065      0.28      11      58 ..      38      86 ..      37      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0046
   PF13371.1 27 ddpyerRDrGlllaqlgclaaAaedLeaflelcp.....dap 63
                + +  +   + ll +lg + +A   +e++l  c+     ++p
  MMETSP0890-20130614|1123_1 13 HVAAGLNNLAALLKKLGKHDEAKSLYERALRICEeklgpNHP 54
                55556667899*******************777633333555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00065
   PF13371.1 11 ferALavverllll.aPddpyerRDrGlllaqlgclaaAaedLeaflel 58
                +erAL+++e  l   +P+ ++ +  r+ ll+++g + +A++ +e++l  
  MMETSP0890-20130614|1123_1 38 YERALRICEEKLGPnHPNVAQSLNNRADLLEKQGKYDEAMALYERALRI 86
                67888888877665578899999**********************9954 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0048         2      65      84 ..      10      29 ..       3      30 .. 0.89
   2 ?    7.1   0.0     0.015       6.3      47      82 ..      33      69 ..      29      71 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0048
   PF14357.1 65 eHPklagtlrnildsLanmG 84
                +HP++a+ l+n++  L+++G
  MMETSP0890-20130614|1123_1 10 NHPHVAAGLNNLAALLKKLG 29
                8*****************99 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.015
   PF14357.1 47 edeslaerlne.averFeaeHPklagtlrnildsLan 82
                e +sl er  +   e+   +HP++a+ l+n +d L +
  MMETSP0890-20130614|1123_1 33 EAKSLYERALRiCEEKLGPNHPNVAQSLNNRADLLEK 69
                56677777766466788899**********9999987 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0      0.01       4.4       8      28 ..      22      42 ..      15      49 .. 0.70
   2 !    7.5   0.0    0.0083       3.5       4      28 ..      60      84 ..      57      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.01
   PF12688.2  8 agarDstGeeakAvplYrrAl 28
                a+     G++++A  lY+rAl
  MMETSP0890-20130614|1123_1 22 AALLKKLGKHDEAKSLYERAL 42
                444556677777777777776 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0083
   PF12688.2  4 lferagarDstGeeakAvplYrrAl 28
                l +ra   +  G+ ++A+ lY+rAl
  MMETSP0890-20130614|1123_1 60 LNNRADLLEKQGKYDEAMALYERAL 84
                56788888999*************8 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0019      0.81      10      42 ..      14      46 ..       6      50 .. 0.87
   2 ?    5.1   0.1      0.04        17       9      40 ..      55      86 ..      47      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0019
   PF10975.3 10 leqklkqleerleeleqqdpesrlYsrAaklve 42
                +++ l++l+  l++l ++d+++ lY+rA+++ e
  MMETSP0890-20130614|1123_1 14 VAAGLNNLAALLKKLGKHDEAKSLYERALRICE 46
                56678899999******************9876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.04
   PF10975.3  9 eleqklkqleerleeleqqdpesrlYsrAakl 40
                +++q+l++ ++ le+  + d++  lY+rA+++
  MMETSP0890-20130614|1123_1 55 NVAQSLNNRADLLEKQGKYDEAMALYERALRI 86
                5677888888888888899999999*999986 PP

>> PF08631.5  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.007         3      47      78 ..      27      55 ..      14      63 .. 0.74
   2 ?    5.4   0.0     0.017       7.3     253     275 ..      62      84 ..      58      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.007
   PF08631.5 47 erktdfseavkwlkraldlleklakidqkste 78
                +   +++ea+ + +ral+++e   k++ ++++
  MMETSP0890-20130614|1123_1 27 KL-GKHDEAKSLYERALRICEE--KLGPNHPN 55
                33.4999*************98..66666665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.017
   PF08631.5 253 nkakklyktknydealewyklal 275
                 n a+ l+k+++ydea  +y+ al
  MMETSP0890-20130614|1123_1  62 NRADLLEKQGKYDEAMALYERAL 84 
                 788999*************9887 PP

>> PF12968.2  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00087      0.37      60     127 ..      20      84 ..      15      90 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00087
   PF12968.2  60 vlsealaklgrydealesaekalryfnrrGeleqdeGklWiaavfsravaleelGrkeealkefrkag 127
                  l++ l klg++dea +  e+alr  + +   ++ +     + + +ra  le+ G+ +ea+  ++ a 
  MMETSP0890-20130614|1123_1  20 NLAALLKKLGKHDEAKSLYERALRICEEKLGPNHPN---VAQSLNNRADLLEKQGKYDEAMALYERAL 84 
                 577778889999999999999998887653333333...34577899999999999999999988876 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1      0.06        25      74      95 ..      19      40 ..      10      48 .. 0.82
   2 ?    8.1   0.1    0.0039       1.7      77      96 ..      64      83 ..      54      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.06
                THHHHHHHT-SSHHHHHHHH-- CS
  PF00637.15 74 ekvaklcekadlyeeavilykk 95
                + +a l++k ++++ea+ ly++
  MMETSP0890-20130614|1123_1 19 NNLAALLKKLGKHDEAKSLYER 40
                6788899999999999999986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0039
                HHHHHT-SSHHHHHHHH--- CS
  PF00637.15 77 aklcekadlyeeavilykki 96
                a+l+ek+++y+ea+ ly++ 
  MMETSP0890-20130614|1123_1 64 ADLLEKQGKYDEAMALYERA 83
                89***************985 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0019      0.81     144     173 ..      15      44 ..       4      50 .. 0.83
   2 ?    2.4   0.1      0.25   1.1e+02     148     171 ..      58      84 ..      47      88 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0019
   PF11846.3 144 pavirrlalalallGkeeeArdamaeaaal 173
                 +a +++la +l  lGk++eA+ + ++a ++
  MMETSP0890-20130614|1123_1  15 AAGLNNLAALLKKLGKHDEAKSLYERALRI 44 
                 456899****************99998765 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.25
   PF11846.3 148 rrl...alalallGkeeeArdamaeaa 171
                 + l   a +l  +Gk +eA ++ ++a 
  MMETSP0890-20130614|1123_1  58 QSLnnrADLLEKQGKYDEAMALYERAL 84 
                 44444499***********88888875 PP

>> PF12729.2  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.74   3.1e+02     143     176 ..       2      35 ..       1      37 [. 0.77
   2 ?    8.2   0.1    0.0029       1.2     137     171 ..      38      72 ..      16      78 .. 0.82
   3 ?    5.5   0.1     0.021       8.8     133     152 ..      69      87 ..      58      90 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.74
   PF12729.2 143 lyetelkparekviealdelvdlnlkvAeeayee 176
                 ++e++l+p+  +v   l++l+ l +k+++   ++
  MMETSP0890-20130614|1123_1   2 IFEEKLGPNHPHVAAGLNNLAALLKKLGKHDEAK 35 
                 5778888888888888999988888888876655 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0029
   PF12729.2 137 kdeAyelyetelkparekviealdelvdlnlkvAe 171
                 ++ A +++e++l+p+  +v ++l++ +dl +k+++
  MMETSP0890-20130614|1123_1  38 YERALRICEEKLGPNHPNVAQSLNNRADLLEKQGK 72 
                 6678888888888***************9999998 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.021
   PF12729.2 133 kegkkdeAyelyetelkpar 152
                 k+gk+deA++lye  l  +r
  MMETSP0890-20130614|1123_1  69 KQGKYDEAMALYERAL-RIR 87 
                 89**********9988.555 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0024         1      76     106 ..      20      50 ..      10      56 .. 0.86
   2 ?    2.9   0.0      0.16        70      75     107 ..      54      86 ..      51      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0024
   PF04781.7  76 laAlsLfelakelgsvkyYkkavkkakeaLs 106
                 + A  L +l+k+ + ++ Y++a++ + e+L 
  MMETSP0890-20130614|1123_1  20 NLAALLKKLGKHDEAKSLYERALRICEEKLG 50 
                 45889**********************9985 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.16
   PF04781.7  75 slaAlsLfelakelgsvkyYkkavkkakeaLsv 107
                 ++ A+sL + a+ l+ +  Y++a+    +aL +
  MMETSP0890-20130614|1123_1  54 PNVAQSLNNRADLLEKQGKYDEAMALYERALRI 86 
                 678999999999999999999999888888876 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.5   2.8e+03      24      30 ..      38      44 ..      32      50 .. 0.72
   2 ?   11.3   0.1   0.00032      0.14      14      35 ..      70      91 .]      67      91 .] 0.93

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 6.5
   PF10516.4 24 lrkaLeL 30
                +++aL +
  MMETSP0890-20130614|1123_1 38 YERALRI 44
                6777765 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00032
   PF10516.4 14 nEnFpqAveDlrkaLeLreqll 35
                ++++++A   +++aL +re++l
  MMETSP0890-20130614|1123_1 70 QGKYDEAMALYERALRIREECL 91
                579*****************96 PP

>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00043      0.18     142     196 ..      31      84 ..      22      89 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHHHHHS-TT-TTT---HHHHHHHHHHTSS-HHHHHHHHHHHH CS
  PF00244.15 142 aekaleaYkeAleiaeselkpthpirLglaLnfsVFyYEilnspekAcelakqaf 196
                  ++a++ Y++Al i+e++l p hp      Ln    + E   + ++A+ l ++a+
  MMETSP0890-20130614|1123_1  31 HDEAKSLYERALRICEEKLGPNHPNV-AQSLNNRADLLEKQGKYDEAMALYERAL 84 
                 6899*******************965.5666666667788999999988888876 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0022      0.95      46     250 ..      23      78 ..      11      82 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
   PF12569.3  46 elllkLgrkeeAekvyraLlernpenkeYyeglekakglekdkiskedeealkalydelaekyprsdaarRlpLdflegdeFkeladaYlkkaLkkgvPslfadlksLykdkekvkileelveeyvkslessgklseeedsekeppstllwalyflAqhydklgsrekaleyidkaieht.ptlvelymtkarilkhaGdlekAae 250
                  ll kLg+++eA+++y++ l++++e                                                                                                                                                       +  + p +     ++a++l+++G +++A++
  MMETSP0890-20130614|1123_1  23 ALLKKLGKHDEAKSLYERALRICEE------------------------------------------------------------------------------------------------------------------------------------------------------KLGPNhPNVAQSLNNRADLLEKQGKYDEAMA 78 
                 5555555555555555555555555......................................................................................................................................................4432224444444444444444444444444 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.15        65      15      28 ..      27      40 ..      18      52 .. 0.82
   2 ?    6.8   0.0     0.013       5.7      11      28 ..      65      82 ..      54      87 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.15
   PF13041.1 15 kkgkveeAfklfne 28
                k gk +eA +l++ 
  MMETSP0890-20130614|1123_1 27 KLGKHDEAKSLYER 40
                6899*******985 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.013
   PF13041.1 11 sglckkgkveeAfklfne 28
                + l k+gk++eA+ l++ 
  MMETSP0890-20130614|1123_1 65 DLLEKQGKYDEAMALYER 82
                56789***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 302.87
//
Query:       MMETSP0890-20130614|1121_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-43  143.2  15.9    1.9e-09   36.9   0.1    6.6  7  PF00400.27 WD domain, G-beta repeat
    1.9e-05   24.0   0.2       0.93    9.1   0.0    5.4  6  PF07676.7  WD40-like Beta Propeller Repeat
    0.00026   20.6   0.2       0.55    9.7   0.0    3.1  3  PF08662.6  Eukaryotic translation initiation factor eIF2A
     0.0014   16.8   0.0        0.2    9.8   0.0    2.8  3  PF02239.11 Cytochrome D1 heme domain
  ------ inclusion threshold ------
      0.031   13.8   0.1      0.067   12.7   0.0    1.5  1  PF00646.28 F-box domain
      0.069   12.4   0.5        2.4    7.4   0.1    3.2  3  PF13360.1  PQQ-like domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   1.1e-12   2.4e-09       7      39 .]      89     121 ..      84     121 .. 0.95
   2 !   36.9   0.1   8.3e-13   1.9e-09       2      39 .]     126     163 ..     125     163 .. 0.96
   3 !   24.0   0.0   9.4e-09   2.1e-05       9      37 ..     174     202 ..     169     203 .. 0.92
   4 !   22.4   0.1     3e-08   6.8e-05       8      39 .]     214     244 ..     209     244 .. 0.89
   5 ?    1.5   0.0      0.12   2.7e+02      12      30 ..     259     277 ..     248     278 .. 0.81
   6 !   27.7   0.4   6.6e-10   1.5e-06       8      39 .]     300     331 ..     296     331 .. 0.97
   7 ?   -3.2   0.0       3.7   8.4e+03       3      20 ..     350     366 ..     348     368 .. 0.69

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-12
                 EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +gH + ++c++f  dg+++ +gS D+t ++Wd
  MMETSP0890-20130614|1121_1  89 VEGHAHDINCCKFTKDGRRVMTGSGDNTAKIWD 121
                 68******************************9 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 8.3e-13
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +++ t+ gH ++Vt+++fspdg++ +++S+D + r+Wd
  MMETSP0890-20130614|1121_1 126 TLLLTFIGHMDSVTACDFSPDGTRAVTASEDDSARMWD 163
                 6789*********************************9 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 9.4e-09
                 SSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirl 37 
                 gH++  + +afspdg++++++++Dg+  +
  MMETSP0890-20130614|1121_1 174 GHENILYGCAFSPDGRRIITAGWDGNAFV 202
                 9************************9776 PP

  == domain 4    score: 22.4 bits;  conditional E-value: 3e-08
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  gHt  Vt+++fs+dg++++++++    r+W+
  MMETSP0890-20130614|1121_1 214 LGHTLEVTSCCFSHDGKYILTSGY-LFARIWN 244
                 59********************98.7777775 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.12
                 SSEEEEEEESSSTEEEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgS 30 
                 s V  +afs d +l++s S
  MMETSP0890-20130614|1121_1 259 SLVAKCAFSFDDKLVLSVS 277
                 557789**********998 PP

  == domain 6    score: 27.7 bits;  conditional E-value: 6.6e-10
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  gH s V++ +fs dg++++s S+D+t  +Wd
  MMETSP0890-20130614|1121_1 300 GGHRSIVRDACFSADGNRVVSVSDDRTALIWD 331
                 69*****************************9 PP

  == domain 7    score: -3.2 bits;  conditional E-value: 3.7
                 EEEEEESSSSSEEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafs 20 
                 +++t++     V +++f 
  MMETSP0890-20130614|1121_1 350 VLSTFTFN-EEVKSCDFT 366
                 56666666.788899885 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.3   6.9e+02       2      16 ..     106     120 ..     101     122 .. 0.78
   2 ?    4.4   0.0     0.012        28      14      24 ..     141     151 ..     139     158 .. 0.83
   3 !    9.1   0.0   0.00041      0.93      13      24 ..     181     192 ..     176     192 .. 0.88
   4 ?   -2.3   0.0       1.5   3.4e+03      19      30 ..     197     208 ..     197     209 .. 0.85
   5 ?    1.4   0.0       0.1   2.4e+02      16      23 ..     225     232 ..     222     233 .. 0.92
   6 ?   -0.3   0.0      0.36   8.2e+02      16      24 ..     311     319 ..     310     325 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.3
                 EE--SSSS-EEEEEE CS
   PF07676.7   2 gqltnssgkngePaw 16 
                 +++ ++sg+n++  w
  MMETSP0890-20130614|1121_1 106 RRVMTGSGDNTAKIW 120
                 678888999887666 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.012
                 EEE-----EEE CS
   PF07676.7  14 PawSPDGkkiv 24 
                   +SPDG++ v
  MMETSP0890-20130614|1121_1 141 CDFSPDGTRAV 151
                 57******976 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00041
                 EEEE-----EEE CS
   PF07676.7  13 ePawSPDGkkiv 24 
                 + a+SPDG++i+
  MMETSP0890-20130614|1121_1 181 GCAFSPDGRRII 192
                 679*******96 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.5
                 ---EEEEEE-BT CS
   PF07676.7  19 DGkkivFtSnRg 30 
                 DG+ +v++ + g
  MMETSP0890-20130614|1121_1 197 DGNAFVYCAETG 208
                 9999****8765 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.1
                 E-----EE CS
   PF07676.7  16 wSPDGkki 23 
                 +S DGk+i
  MMETSP0890-20130614|1121_1 225 FSHDGKYI 232
                 9*****99 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 0.36
                 E-----EEE CS
   PF07676.7  16 wSPDGkkiv 24 
                 +S DG++ v
  MMETSP0890-20130614|1121_1 311 FSADGNRVV 319
                 8****9987 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00024      0.55     100     167 ..      93     159 ..      62     174 .. 0.76
   2 !    7.4   0.0    0.0013       2.9     107     162 ..     183     236 ..     166     247 .. 0.79
   3 ?   -1.9   0.0      0.93   2.1e+03     129     162 ..     242     277 ..     234     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00024
   PF08662.6 100 ekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiaka..easnatlvewspdgryvlTattsprl 167
                 ++  N+ ++ + gr v+++   n+    +i+d  + + + ++  +    t +++spdg+  +Ta+   + 
  MMETSP0890-20130614|1121_1  93 AHDINCCKFTKDGRRVMTGSGDNT---AKIWDAVTGTLLLTFigHMDSVTACDFSPDGTRAVTASEDDSA 159
                 5678999*******9988887777...799***976666655214445689************9875554 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0013
   PF08662.6 107 fwspqgrlvllaGfgnlaGeleiydvkklkk.iakaeasnatlvewspdgryvlTat 162
                  +sp gr +++aG     G+  +y  ++ ++ ++  +  + t++ +s dg+y+lT+ 
  MMETSP0890-20130614|1121_1 183 AFSPDGRRIITAGWD---GNAFVYCAETGECqLTLGHTLEVTSCCFSHDGKYILTSG 236
                 699999999999985...6667777775554155556678999************85 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.93
   PF08662.6 129 iydvkklkkiakaeasna..tlvewspdgryvlTat 162
                 i++  + + i+k  ++++   ++ +s d+++vl+ +
  MMETSP0890-20130614|1121_1 242 IWNAADGTFIKKLMHTDSlvAKCAFSFDDKLVLSVS 277
                 788888888888888776335799999999998765 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.011        25     294     349 ..      67     125 ..      22     135 .. 0.82
   2 !    9.8   0.0   8.7e-05       0.2      10      98 ..     151     238 ..     143     263 .. 0.82
   3 ?    0.4   0.0     0.059   1.3e+02     317     352 ..     305     338 ..     269     351 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.011
                 T-EEEEECCGTEEEE-HHHHHT--.....EEEEEE-----EEEEEEE----EEEEEETTTT CS
  PF02239.11 294 dsvaviDsktleivltlaesaglk.....vvqvEfnkdGdevwlSvwdgkdalvvyDdktl 349
                 ++  ++D++t +  +tl++  +++     +    f+kdG++v+     g++   ++D+ t 
  MMETSP0890-20130614|1121_1  67 QKAFIFDTETNNLLHTLEHCLEVEghahdINCCKFTKDGRRVMTG--SGDNTAKIWDAVTG 125
                 5667899999988888887766666666688899******99876..45555788888775 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 8.7e-05
                 EEBTT---EEEE-----SEEEEE-------EEEE---.--EEEEE---SEEEEEETTSSSEEEEEE---B----EE--TTT-EEE--TB CS
  PF02239.11  10 vverdagkvalidgdskeilavlesgyalHisrvfasdgRyvyvigRDgkltliDLwakeivaevkaGlnarsvavSqedryvivgnYl 98 
                 v+ +++ + ++ d+++ + l  + ++ ++  +  f++dgR + ++g Dg+  ++   + e   ++   l+  s   S++++y++++ Yl
  MMETSP0890-20130614|1121_1 151 VTASEDDSARMWDAENGTLLLYF-GHENILYGCAFSPDGRRIITAGWDGNAFVYCAETGECQLTLGHTLEVTSCCFSHDGKYILTSGYL 238
                 55566666666666665555555.4445556789********************99999999999999******************997 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.059
                 -EEEEEE-----EEEEEEE----EEEEEETTTTEEE CS
  PF02239.11 317 kvvqvEfnkdGdevwlSvwdgkdalvvyDdktlklk 352
                  v  + f++dG++v +Sv d  +a +++D +t  ++
  MMETSP0890-20130614|1121_1 305 IVRDACFSADGNRV-VSVSDDRTA-LIWDSYTEIEL 338
                 36778899999998.699999966.58999996655 PP

>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05     0.067       5      31 ..      21      47 ..      20      48 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.9e-05
                HS-HHHHHHHHTTS-HHHHHHHCTS-H CS
  PF00646.28  5 rLPsevlenILerLpfsdllalrlVSk 31
                ++P+e+++ + ++ ++sd+l + ++S+
  MMETSP0890-20130614|1121_1 21 SVPDELWRRVVRFFSPSDILIFKQTSR 47
                68************************8 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.001       2.4      35      98 ..     104     169 ..      24     209 .. 0.67
   2 ?    0.1   0.0      0.18   4.1e+02       8      59 ..     162     211 ..     154     249 .. 0.71
   3 ?   -0.6   0.0      0.28   6.4e+02      35      57 ..     314     336 ..     297     360 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.001
   PF13360.1  35 dggtlfvasakgrlvaldaatGkvlWskslegeiega..plvaggrvvvvtadnslvaldaetGkl 98 
                 dg+++ ++s++++   +da tG++l ++    + ++a     +g r+v +++d+s +  dae+G+l
  MMETSP0890-20130614|1121_1 104 DGRRVMTGSGDNTAKIWDAVTGTLLLTFIGHMDSVTAcdFSPDGTRAVTASEDDSARMWDAENGTL 169
                 666666667777777777777777766655333333332355666666666666666666666665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.18
   PF13360.1   8 ldaatGkelWrvdlkpalgggvseavldggtlfvasakgrlvaldaatGkvl 59 
                 +da++G++l     ++ +  g    ++dg+++++a+ +g+ + + a+tG+ +
  MMETSP0890-20130614|1121_1 162 WDAENGTLLLYFGHEN-ILYGC-AFSPDGRRIITAGWDGNAFVYCAETGECQ 211
                 5666666666664432.22232.24568999999987777777777888765 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.28
   PF13360.1  35 dggtlfvasakgrlvaldaatGk 57 
                 dg++++++s++++   +d  t  
  MMETSP0890-20130614|1121_1 314 DGNRVVSVSDDRTALIWDSYTEI 336
                 44555555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:01.03
# Mc/sec: 865.48
//
Query:       MMETSP0890-20130614|1124_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-23   82.6   0.0    3.2e-23   82.2   0.0    1.1  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   2.4e-27   3.2e-23       1     163 [.      14     186 ..      14     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 2.4e-27
  PF00849.17   1 dlvvvnKPagvpvtpeakggsekeketta...tssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskd..............tekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahla 163
                 +++++nKP ++  +++ + g+++ + ++    +s + ++   el+l+h+LD+atsG++ll   ++a +++ ++fe+rk++K Y al + + + + g+i ++                   ++  g   k+++++   a+t++ vl+ g     s ++++vt+v l++ tGr+hQ+R+h  
  MMETSP0890-20130614|1124_1  14 EYIAINKPFDMRIDSGRH-GEKADEPNVMdivRSMTTKSVAPELRLCHQLDYATSGIMLLGIGRKATARAGRLFEARKTKKLYTALFT-GILAQPGTIVTCDAPVcqhpenpfqmmvgdKHQVWGSADKKRKRHSGPASTHITVLDIG-----SFQDQAVTKVLLKPLTGRRHQLRIHAL 186
                 59***************5.44444444430113445558889********************************************98.55555555555555555557777777775333455677888899999************.....9************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|1126_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.033   14.0   0.0    1.1  1  PF11938.3  TLR4 regulator and MIR-interacting MSAP
      0.045   13.4   0.5       0.13   12.0   0.1    1.9  2  PF05184.10 Saposin-like type B, region 1


Domain annotation for each model (and alignments):
>> PF11938.3  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.8e-06     0.033       4      67 ..      55     113 ..      53     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.8e-06
   PF11938.3   4 CeaCkavaeeleealsktdpkkevdvrgfrldsdgkrkkkkkylarSelrlvEllegvCekmkd 67 
                 C +C++v  e  + ++k++ k   ++    + + g ++++++y   Se+++  ++  +C++  d
  MMETSP0890-20130614|1126_1  55 CDVCEIVIAEAYDIVEKQKAKAPKEMA--AIRPGGPKQERSTY---SETEVNSVMTDICNRRRD 113
                 **********77776666666653443..68888998888888...**************9876 PP

>> PF05184.10  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.9e-05      0.13       3      23 ..      54      74 ..      53      76 .. 0.87
   2 ?   -1.7   0.0      0.36   2.5e+03      22      36 ..      95     109 ..      92     110 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
  PF05184.10  3 lCdlCefvvkyvekllkdnst 23
                +Cd+Ce v+ ++ + +++++ 
  MMETSP0890-20130614|1126_1 54 GCDVCEIVIAEAYDIVEKQKA 74
                7***************98775 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.36
  PF05184.10  22 steeeIikaldkvCe 36 
                 ++e+e+   + ++C+
  MMETSP0890-20130614|1126_1  95 YSETEVNSVMTDICN 109
                 568888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 542.13
//
Query:       MMETSP0890-20130614|1129_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 629.55
//
Query:       MMETSP0890-20130614|1127_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    8.5   6.4        2.6    7.7   0.2    3.1  2  PF07713.8 Protein of unknown function (DUF1604)


Domain annotation for each model (and alignments):
>> PF07713.8  Protein of unknown function (DUF1604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2   0.00019       2.6      21      83 ..     144     207 ..     141     212 .. 0.75
   2 ?    1.7   1.2     0.015     2e+02      54      80 ..     216     242 ..     209     266 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00019
   PF07713.8  21 hGAftGGfsaGyfntvGskeGwtpktfkssreerakekkqraedfmdeedlkelk.eakklktk 83 
                 hG ft       + +  s  G++p+    + ++++++k+q+++d ++e+d + ++ +++++  +
  MMETSP0890-20130614|1127_1 144 HGLFTHSNGLDVMTSMHSLPGFMPSLSAHASSQQQHNKQQSSRDKVEENDDAPRAnQQEEIDDQ 207
                 66666555555567788999****998888888888899*******999988776466666655 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.015
   PF07713.8  54 rakekkqraedfmdeedlkelkeakkl 80 
                 r++ +k++ae +m+e+d+k+ ++ k++
  MMETSP0890-20130614|1127_1 216 RRRYRKKKAETMMNEDDIKSSERRKQM 242
                 455678899999999999998766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1422  (0.104008); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.38s 00:00:01.52 Elapsed: 00:00:01.02
# Mc/sec: 1663.35
//
Query:       MMETSP0890-20130614|1130_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-05   23.5   0.0    9.5e-05   22.1   0.0    1.7  2  PF13535.1 ATP-grasp domain
    0.00093   18.4   0.0       0.38    9.8   0.0    2.9  3  PF14305.1 TupA-like ATPgrasp
  ------ inclusion threshold ------
        0.1   11.5   0.0       0.18   10.7   0.0    1.3  1  PF14397.1 Sugar-transfer associated ATP-grasp
        7.1    5.9   8.8       0.65    9.3   2.1    2.0  2  PF11206.3 Protein of unknown function (DUF2988)


Domain annotation for each model (and alignments):
>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.8e-08   9.5e-05       5     135 ..     101     229 ..      98     247 .. 0.73
   2 ?   -1.5   0.0      0.46   1.6e+03     138     174 ..     280     312 ..     233     315 .. 0.62

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.8e-08
   PF13535.1   5 Kllmrellaeaglpvpr.falvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyie.....Gdeysvdglvldgel.vflgisryl.etsppdfsdgaelgsvspseep 135
                 Kl+  e++++ g+++++ + +v+  ++++aa  ++   +v+KP+dg++s++v++v+   e+ +     + +++ +++ f+vEe+i+       +  +  l+++ ++  +l++s +l  + +p+    +e+ +v++ e+ 
  MMETSP0890-20130614|1130_1 101 KLKGLEFARALGVETAKvYDCVARPDEFKAAQLHV--GYVAKPVDGFSSQDVFVVK-HGEIANK--SMDPKSN-WKRGFMVEELIQhfdniSGLADYKFLMFGRKIgAVLVVSGRLqSSACPN----CETCRVWVDENF 229
                 566668999*****999666666666666666665..6****************95.5555555..3555666.889*********8888756677777788888875555555540455555....888888877664 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.46
   PF13535.1 138 ealrelaerllkalglkngvfHlEfkltpdGrlvliE 174
                 +++++ a+ l  ++g+   ++ ++f+ +++G+  l E
  MMETSP0890-20130614|1130_1 280 DKMVNDARTLGVSVGV---AMRVDFFASSRGP-LLSE 312
                 4444444444444444...6779999999996.6666 PP

>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.011        37      47      90 ..     122     171 ..     109     182 .. 0.67
   2 ?    3.4   0.0      0.01        35     100     137 ..     161     199 ..     152     216 .. 0.75
   3 !    9.8   0.0   0.00011      0.38     198     221 ..     297     320 ..     275     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.011
   PF14305.1  47 l...edidfeklpkkfviKpthssg..slvivrdktslnilkak.kklnk 90 
                 +   ++ + ++l   +v Kp+++ +  ++++v+  +  n+ +   +++++
  MMETSP0890-20130614|1130_1 122 VarpDEFKAAQLHVGYVAKPVDGFSsqDVFVVKHGEIANKSMDPkSNWKR 171
                 433377888999999*******7552266666666666665543355655 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.01
   PF14305.1 100 greweyknikpriivEkllkdetake.lrDyKffcFngk 137
                 ++  + +n k+  +vE+l++  ++ + l+DyKf  F  k
  MMETSP0890-20130614|1130_1 161 KSMDPKSNWKRGFMVEELIQHFDNISgLADYKFLMFGRK 199
                 5566778889999999999988875426******99764 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00011
   PF14305.1 198 vRvDfykvedklyfGElTfypgsg 221
                 +RvDf+++++++ + E+T+ p  g
  MMETSP0890-20130614|1130_1 297 MRVDFFASSRGPLLSEFTPFPTHG 320
                 7******************99876 PP

>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.2e-05      0.18      70     135 ..     131     189 ..      99     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.2e-05
   PF14397.1  70 eeepkelvvKpvdgsgGkgieileaddqvsaekklealyklleenekfefvvqelikqheelskln 135
                 ++    +v Kpvdg++++++ +++  +       ++++ + +++ + ++f+v+eli+  +++s l+
  MMETSP0890-20130614|1130_1 131 AQLHVGYVAKPVDGFSSQDVFVVKHGE------IANKSMDPKSNWK-RGFMVEELIQHFDNISGLA 189
                 3334679**************966553......3444444444444.5*********999998776 PP

>> PF11206.3  Protein of unknown function (DUF2988)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.32   1.1e+03       1      11 [.       2      11 ..       2      14 .. 0.74
   2 ?    9.3   2.1   0.00019      0.65      17      29 ..      23      35 ..      20      36 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.32
   PF11206.3  1 KHRgLlVfsDF 11
                KHR Ll f +F
  MMETSP0890-20130614|1130_1  2 KHR-LLLFIGF 11
                898.6667777 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00019
   PF11206.3 17 STlSTKSaSeKle 29
                ST ST+S+SeKl+
  MMETSP0890-20130614|1130_1 23 STNSTNSTSEKLK 35
                9**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.85
# Mc/sec: 964.18
//
Query:       MMETSP0890-20130614|1133_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-08   32.6   0.0    9.3e-07   28.4   0.0    2.1  2  PF03540.8 Transcription initiation factor TFIID 23-30kDa subunit


Domain annotation for each model (and alignments):
>> PF03540.8  Transcription initiation factor TFIID 23-30kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.8e-11   9.3e-07       2      50 ..      36      88 ..      36      89 .. 0.90
   2 ?    1.8   0.0     0.014   1.9e+02      12      37 ..     104     133 ..     100     139 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.8e-11
   PF03540.8  2 iIPDavtdhyLkkaGfet....sDprvkrLlsLaaqKFvsDiaadalqyarir 50
                ++P++v  +yL + G++     +   v +L++La++ F+  + +da  ++ +r
  MMETSP0890-20130614|1133_1 36 TVPEEVCRYYLREGGVDIredeNQELVLKLVALATDHFLVRVCQDARDFSALR 88
                69***************99887777899******************8877666 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.014
   PF03540.8  12 LkkaGfet....sDprvkrLlsLaaqKFvs 37 
                 L++ G+ t    +D  ++  +s  + ++v+
  MMETSP0890-20130614|1133_1 104 LQRRGVTTlhptTDEELSAVVSASTRRHVR 133
                 777888888888*************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.50s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 666.81
//
Query:       MMETSP0890-20130614|1131_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-06   27.2   0.0    0.00019   20.9   0.0    3.4  4  PF00085.15 Thioredoxin
     0.0059   16.3   0.0        8.1    6.0   0.0    3.7  4  PF13848.1  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.022   14.3   0.4        7.6    6.1   0.2    2.5  2  PF10607.4  CTLH/CRA C-terminal to LisH motif domain


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.3e-08   0.00019       5      95 ..      54     149 ..      50     158 .. 0.86
   2 ?   -3.8   0.0         2   9.1e+03      74     101 ..     242     271 ..     239     273 .. 0.68
   3 ?    0.6   0.0     0.086   3.9e+02      61      87 ..     485     511 ..     459     519 .. 0.79
   4 ?    0.1   0.0      0.12   5.5e+02      64     101 ..     654     694 ..     634     696 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.3e-08
                 SSHHHHHHHHHH.HHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-..TSEEEEEETTTT...HHHHHHTT--SSSEEEEESSSSEEEEE---.-HH CS
  PF00085.15   5 ltkenfeeevak.sdklvlvefyApwCGhCkalaPeyeklaeelke..kvvlakvdvden...kdlaseygvegiPtlklfkngkkveevegareke 95 
                 ++ + fe++v   +++ +l+  y   C  C a+a  + ++  el+e   v+ a +dv +    +++a+++++  +P +     ++  + ++g+ ++ 
  MMETSP0890-20130614|1131_1  54 TNVADFESQVLGdGSSIWLITLYGADCEACEAIAEPFSEITLELSEslGVKTAAIDVSAPgvgQKIAKKMNIGQVPMIFGHSSESSTNPYTGK-PNR 149
                 56678998887648899*****************************999********9755569**************999999999999998.333 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2
                 SEEE.EESSSSEEEEE---..-HHHHHHHH CS
  PF00085.15  74 Ptlk.lfkngkkveevega.rekeklvafl 101
                 P+l+ l k++ ++e++ g+ ++++++  +l
  MMETSP0890-20130614|1131_1 242 PKLVaLSKDSTEIETYGGSlKSRNEILTWL 271
                 555414577778889999877777887776 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.086
                 THHHHHHTT--SSSEEEEESSSSEEEE CS
  PF00085.15  61 nkdlaseygvegiPtlklfkngkkvee 87 
                  +++ +++g++  P ++ f++++  + 
  MMETSP0890-20130614|1131_1 485 DAQVLERFGISKAPAIIAFHGQQAEDG 511
                 4578899************99987764 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.12
                 HHHHTT--..SSSEEEEESSS.SEEEEE---.-HHHHHHHH CS
  PF00085.15  64 laseygve..giPtlklfkng.kkveevegarekeklvafl 101
                 la  ++++   +Pt++ +    k+ + ++g  ++++l++fl
  MMETSP0890-20130614|1131_1 654 LALAFDIDpmKLPTVVAYAPKkKRFAAYVGRFDAKDLKSFL 694
                 55555555225699987765505566***********9998 PP

>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.13   5.8e+02      61     103 ..     162     201 ..     118     224 .. 0.68
   2 !    4.1   0.0     0.007        32      30      76 ..     230     276 ..     211     285 .. 0.83
   3 ?   -0.6   0.0      0.19   8.6e+02     137     158 ..     484     503 ..     439     510 .. 0.64
   4 !    6.0   0.0    0.0018       8.1      40      71 ..     664     694 ..     635     696 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.13
                 T--HHHHHHHHHHH--XX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1  61 kltvddlkkfieknslpl.vgeltpenaeelfesglppllllfl 103
                  +++ dlk+++ +  lp    ++ +   e +++s+lp +++l+ 
  MMETSP0890-20130614|1131_1 162 IFKPSDLKRWVSTTLLPKdLVKRGS---EVISSSPLP-TVALIT 201
                 3567778888887777775555555...566666655.555554 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.007
                 -HHHHHHTT-----EEEEETTTTEEEEE-HH.T--HHHHHHHHHHH-- CS
   PF13848.1  30 ekevakklgikepkvllfrkfdekrvkydge.kltvddlkkfieknsl 76 
                 e+e +++ + + pk++   k++++ ++y g+ k + +++ +++e++ l
  MMETSP0890-20130614|1131_1 230 EAETFADADDELPKLVALSKDSTEIETYGGSlK-SRNEILTWLESKAL 276
                 567777788888*******************65.9********99866 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.19
                 XXXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1 137 sfkrlleylglsssdlPviviv 158
                 + +++le++g+s  + P+i+ +
  MMETSP0890-20130614|1131_1 484 QDAQVLERFGIS--KAPAIIAF 503
                 336677777777..77777654 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0018
                 ----EEEEETTTTEEEEE-HHT--HHHHHHHH CS
   PF13848.1  40 kepkvllfrkfdekrvkydgekltvddlkkfi 71 
                 k p+v+ + ++++ ++ y g  ++++dlk+f+
  MMETSP0890-20130614|1131_1 664 KLPTVVAYAPKKKRFAAYVGR-FDAKDLKSFL 694
                 335566666666666666665.6666666654 PP

>> PF10607.4  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0017       7.6       2      39 ..     261     298 ..     260     300 .. 0.89
   2 ?    5.5   0.0    0.0024        11      76     128 ..     438     573 ..     398     590 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0017
   PF10607.4   2 ikerqkIrklilegdlseaiewtnenkpellesnsnLe 39 
                 +k r++I++ ++++ lseai++t++ + +  ++++++e
  MMETSP0890-20130614|1131_1 261 LKSRNEILTWLESKALSEAISQTDTANDKDQSQKDDIE 298
                 799*********************99988888877775 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0024
   PF10607.4  76 keledamsLLafsdpas...................................................................................elssplknlldpsrrekvaeefnsailkllglskes 128
                 + + +am+ L+fs+ ++                                                                                   + s+ l ++l+ps  ek+a+ ++++ +  l+  k+s
  MMETSP0890-20130614|1131_1 438 ENVPPAMGILIFSNSEQpsvhvralattlrasldvsvgqyvlssnaqdaqvlerfgiskapaiiafhgqqaedgprgqvqlglapydrrqfgpptfrsliTFSQVLLQQLKPSAAEKLANFVIEEATGFLNSRKSS 573
                 556678999999997779999999999999999999999999999999999999999999999999999999999999999999999999999999999977889999***************9998888776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1373  (0.100424); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.68s 00:00:01.85 Elapsed: 00:00:01.69
# Mc/sec: 1147.13
//
Query:       MMETSP0890-20130614|1136_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.04
# Mc/sec: 661.30
//
Query:       MMETSP0890-20130614|1134_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   50.8   0.0    1.9e-12   46.8   0.0    2.2  2  PF00534.15 Glycosyl transferases group 1
    1.2e-08   35.1   0.1      6e-08   32.8   0.1    2.0  1  PF13692.1  Glycosyl transferases group 1
     0.0022   18.0   0.0     0.0047   17.0   0.0    1.5  1  PF13524.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.035   1.6e+02       8      38 ..     200     230 ..     193     239 .. 0.84
   2 !   46.8   0.0   4.2e-16   1.9e-12      76     134 ..     289     347 ..     277     357 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.035
                 XXXXXX--EEEEE---BSTTT-HHHHHHHHH CS
  PF00534.15   8 klgknekkkiilsvgrlekeKgvdllikafa 38 
                 +  +++   ++lsv   e +Kg d l++a++
  MMETSP0890-20130614|1134_1 200 EDHFKQASFLVLSVFKWEARKGWDILLRAWR 230
                 5566778899*******************97 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 4.2e-16
                 ----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTBCCGGG-SS CS
  PF00534.15  76 ifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvggpaeivkdg 134
                 ++++++++++l +lyr+adi+v+p r Eg+G   +EAm++g+p+ia+n +gp  +++++
  MMETSP0890-20130614|1134_1 289 RIMSQLSQDELVALYRRADILVMPTRGEGWGRPHVEAMSVGKPIIATNWSGPTAYLTSD 347
                 67788999****************************************99988877765 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   1.3e-11     6e-08       5     111 ..     210     346 ..     207     358 .. 0.61

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.3e-11
   PF13692.1   5 igssgsltndkdleelleeal........prlreklpdvelviiGk.....................gpd..e..larllep.nveflgfv..eelaellasadvglaplrfgeglplKlleylaaGlPvvasdi.gaeglpee 111
                 ++s+  +++ k+++ ll+ a+        +  +++  + +l+++ +                     g +  e  l++      ++++  +  +el++l+++ad+++ p+r geg +   +e++++G+P++a+++ g+ +++  
  MMETSP0890-20130614|1134_1 210 VLSVFKWEARKGWDILLR-AWraafstqeC--QANESKPTLILLTNafhssndferklddfsrdsniGLNetElgLKA---LcPIRIMSQLsqDELVALYRRADILVMPTR-GEGWGRPHVEAMSVGKPIIATNWsGPTAYLTS 346
                 556666777777777777.77555554222..2223344666666655555444443322222221111111122333...1356667777668****************8.**99999****************888877753 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06    0.0047       3      83 ..     310     411 ..     308     420 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1e-06
   PF13524.1   3 LnpsrsespnlrlfEaaacGtpvvtddtsgleelfepgk....................eivlfe.dleelaeklryllanpeereaiaeaarervlaehty 83 
                 + p+r e+      Ea+  G p++++ +sg   +++ ++                    +  ++e d++ l + l ++ + p+er++ + +ar+++ + ++ 
  MMETSP0890-20130614|1134_1 310 VMPTRGEGWGRPHVEAMSVGKPIIATNWSGPTAYLTSDNgyplriqpdlvlvggdgpfrNHRWAEpDIQHLTQLLLRARDFPDERQKKGIRARQDMMTLFSP 411
                 568899999999***********************************************999*********************************9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:01.10
# Mc/sec: 965.08
//
Query:       MMETSP0890-20130614|1137_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:01.01
# Mc/sec: 170.83
//
Query:       MMETSP0890-20130614|1138_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-13   47.9   0.0    9.8e-13   47.5   0.0    1.2  1  PF05486.7  Signal recognition particle 9 kDa protein (SRP9)
  ------ inclusion threshold ------
       0.06   13.0   0.8       0.26   10.9   0.1    2.1  2  PF01491.11 Frataxin-like domain
      0.063   12.8   0.1      0.091   12.3   0.1    1.3  1  PF00564.19 PB1 domain


Domain annotation for each model (and alignments):
>> PF05486.7  Signal recognition particle 9 kDa protein (SRP9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   2.2e-16   9.8e-13       3      70 ..       6      66 ..       4      74 .. 0.94

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 2.2e-16
   PF05486.7  3 ktwdeFleqSslLleanPstTrittkYshpskkkstatltlKttdpksGiclkYktnkakevsRllkf 70
                +t+d+F ++ ++L+e +P++ r+++kY+h     +++ +tl+ t+++    l Ykt+++++++Rl+++
  MMETSP0890-20130614|1138_1  6 ETIDDFTDKVKQLYESDPEKVRLVLKYRH-----TDGVMTLRATNDEL--WLIYKTDQSSDMRRLEAM 66
                699**************************.....**************..***************987 PP

>> PF01491.11  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.8e-05      0.26      10      67 ..       8      73 ..       5      79 .. 0.72
   2 ?    0.2   0.0      0.12   5.7e+02      20      37 ..      78      95 ..      73     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.8e-05
  PF01491.11 10 adellesleekleelaeeadadiDvelsggvltlefenkgtivinkqep........nkqiWlssp 67
                +d++ +++++  e+  e+    + +++++gv+tl+ +n + + i k +           q+W+ + 
  MMETSP0890-20130614|1138_1  8 IDDFTDKVKQLYESDPEKVRLVLKYRHTDGVMTLRATNDELWLIYKTDQssdmrrleAMQLWMTAS 73
                677888888888888888889999*******************98855411111111457777666 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.12
  PF01491.11 20 kleelaeeadadiDvels 37
                ++e+l+e+a+ d+D++++
  MMETSP0890-20130614|1138_1 78 SVESLTEAAEDDVDTTVT 95
                678888888889988765 PP

>> PF00564.19  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     2e-05     0.091      20      59 ..       4      46 ..       1      63 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2e-05
                SSS-HHHHHHHHHHHCTB-..GSSEEEEEEETTC.SEEEE-SH CS
  PF00564.19 20 snisfeeLrskveqrfkls..dedvklkYpdedg.dlvtitsd 59
                ++ + +++ +kv+q + ++  ++++ lkY+ +dg   ++ t+d
  MMETSP0890-20130614|1138_1  4 RPETIDDFTDKVKQLYESDpeKVRLVLKYRHTDGvMTLRATND 46
                66799**************9999**********9555554554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 426.02
//
Query:       MMETSP0890-20130614|1140_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-80  268.3   2.5    2.8e-80  268.1   1.7    1.0  1  PF01015.13 Ribosomal S3Ae family


Domain annotation for each model (and alignments):
>> PF01015.13  Ribosomal S3Ae family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1   1.7   2.1e-84   2.8e-80       2     195 .]      12     222 ..      11     222 .. 0.99

  Alignments for each domain:
  == domain 1    score: 268.1 bits;  conditional E-value: 2.1e-84
                 -----.---S-TTSSEEEEEEE--TTS-SS---EEEEE-.......TTS----EEEEES-SSSST.TS---EEEEEEEEE----EEEEE---B--HHHHHHS--TTB-EEEEEEEEE-----EEEEEEEEEE---.........-THHHHHHHHHHHHHHHHHHHHT---HHHHHHH---HHHHHHHHHHTTT--EEEEEEEEEEEEE--- CS
  PF01015.13   2 kkkgk.kkkvdkwkrKeWykvkAPkifgereiGktlank.......seklkgRvvevsLadltndasksnrklklkieevegknalTnFhgmeltrdklrslvrkrsskieaivdvktkDgyllrvfviaftkkr.........aktsqkkaiRkkmveiiekeaseldlkelvkkliegkiakeiekeakkIyplrkveIrKvkvlkepk 195
                 +kkg+ kk+ d++ +KeWy+vkAP++f+ r+ Gktl+++       s++lkgRv+e sLadl++d+++s+rk+kl +eev+g ++lTnFhgm++trdkl sl++k++s+ie +vd+kt+Dgy++r+f+iaft+k          a++ q++aiRkkmvei+++eas++dlk+lv kli++ +++eiek++  I+pl++v+IrKvkvlk+pk
  MMETSP0890-20130614|1140_1  12 SKKGGkKKATDPFLKKEWYEVKAPNMFSVRKAGKTLVTRtqgqkvaSDGLKGRVFEFSLADLNKDEDQSYRKIKLVVEEVQGYSCLTNFHGMDMTRDKLSSLIKKWQSLIEGNVDIKTTDGYTVRLFCIAFTTKMpdqiskfcyANSAQIRAIRKKMVEIMRDEASKCDLKDLVLKLIPEFMGTEIEKACAGIFPLQNVFIRKVKVLKKPK 222
                 677777***********************************************************************************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.45s 00:00:01.01 Elapsed: 00:00:01.03
# Mc/sec: 621.19
//
Query:       MMETSP0890-20130614|1142_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-07   29.5   0.0    1.1e-06   29.0   0.0    1.2  1  PF12847.2  Methyltransferase domain
    2.2e-06   27.2   0.0    2.9e-06   26.8   0.0    1.1  1  PF13847.1  Methyltransferase domain
    3.9e-06   26.7   0.0    4.7e-06   26.5   0.0    1.2  1  PF13659.1  Methyltransferase domain
    0.00025   20.1   0.1     0.0003   19.8   0.1    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    0.00073   18.5   0.0     0.0009   18.2   0.0    1.2  1  PF00398.15 Ribosomal RNA adenine dimethylase
     0.0056   16.2   0.0      0.007   15.9   0.0    1.2  1  PF13489.1  Methyltransferase domain
     0.0082   15.4   0.0      0.011   15.0   0.0    1.2  1  PF05175.9  Methyltransferase small domain
     0.0085   15.0   0.0      0.012   14.5   0.0    1.2  1  PF02390.12 Putative methyltransferase
     0.0097   15.1   0.0      0.011   14.9   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.025   13.9   0.0      0.035   13.5   0.0    1.1  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.037   13.3   0.0       0.05   12.8   0.0    1.2  1  PF03602.10 Conserved hypothetical protein 95
      0.072   13.4   0.0      0.097   13.0   0.0    1.3  1  PF08241.7  Methyltransferase domain
      0.072   13.3   0.0        0.1   12.8   0.0    1.2  1  PF13649.1  Methyltransferase domain
      0.093   12.1   0.1       0.12   11.7   0.1    1.2  1  PF01170.13 Putative RNA methylase family UPF0020


Domain annotation for each model (and alignments):
>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.2e-09   1.1e-06       5      64 ..      32      92 ..      28     127 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.2e-09
   PF12847.2  5 ilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaks.ldleeriellqgda.kee 64
                +lD+G+G G++ +++    +ga+  +g++++++ +++a +n k+   +++r+++++ d+ k +
  MMETSP0890-20130614|1142_1 32 VLDIGTGDGRIPIWAVL--RGARcGIGIEIDAALVRRALANGKKhGLNSDRFQIIHEDItKTD 92
                7****************..99999******************8845566**********4333 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.9e-09   2.9e-06       3      97 ..      28     119 ..      26     127 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.9e-09
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAkeraqklgfe..nveFiqgdieelekl.leesfDlvisnevlnaladpqkvlkeie 97 
                  +  vlD+G+G G++ + +  +   ga+  +Gi+i++  + +A  + +k+g++  ++++i++di++ + + + +  D     + l+  + ++++l+ ie
  MMETSP0890-20130614|1142_1  28 TNDIVLDIGTGDGRIPIWAV-L--RGARcGIGIEIDAALVRRALANGKKHGLNsdRFQIIHEDITKTDVKcITDALDS----ASLMVTYLLPEALRTIE 119
                 6789***********98777.3..466667**********************9999*********9884444433332....44455555555555554 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.8e-09   4.7e-06       3      63 ..      31      92 ..      29     150 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 4.8e-09
   PF13659.1  3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaragla.ervrvrqgdlrdla 63
                 vld+g+G G ++++a  ++a  ++g+E+d++ ++ a +n +++gl+ +r+++++ d+++++
  MMETSP0890-20130614|1142_1 31 IVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNsDRFQIIHEDITKTD 92
                59************************************999999985267********9874 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   3.1e-07    0.0003     159     226 ..      26      93 ..      14     127 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.1e-07
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevallkelpkeka 226
                 +++++ vlD+GtG G + i a++ ga+  +++ iD   v+ a +N ++ ++++ ++++ ++++++k ++
  MMETSP0890-20130614|1142_1  26 LNTNDIVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNSdRFQI-IHEDITKTDV 93 
                 567889******************************************9999878876.5566655433 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.2e-07    0.0009      18      91 ..      16      94 ..      12     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.2e-07
  PF00398.15 18 vineIldklnlqekdtvlEigpGkGalTe.eLakrakqvvalEidsklvkrlqkkla....kdenvevvhqDflkfstp 91
                v++e+l  + l+++d vl+ig+G+G +   ++ + a+    +Eid  lv+r  ++ +    ++++++++h+D+ k++++
  MMETSP0890-20130614|1142_1 16 VLDEALTFAGLNTNDIVLDIGTGDGRIPIwAVLRGARCGIGIEIDAALVRRALANGKkhglNSDRFQIIHEDITKTDVK 94
                889999*******************998624566669999**********9877666667799************9986 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-06     0.007      10      60 ..      18      73 ..      13     123 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.2e-06
   PF13489.1 10 adllerllarlkpggrvLDiGcGtGillellaengfd.vtgvDpspaaigk......a 60
                 ++l +++  l+++  vLDiG+G+G+       +g++  +g++++ a++ +      +
  MMETSP0890-20130614|1142_1 18 DEALTFAG--LNTNDIVLDIGTGDGRIPIWAVLRGARcGIGIEIDAALVRRalangkK 73
                45566666..9**************998877999998466999999988875533331 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.011      32      93 ..      29      91 ..      14     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
                -----B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----...--EEE-STTTT CS
   PF05175.9 32 agkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen..vevlasdllee 93
                ++ vlD+G+G G + +++  ++ ++ +  ++i+a+ v+ a an ++++l++   +++++d++++
  MMETSP0890-20130614|1142_1 29 NDIVLDIGTGDGRIPIWAVLRGARCGI-GIEIDAALVRRALANGKKHGLNSdrFQIIHEDITKT 91
                4559********************876.68*******************99999******9875 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05     0.012      19      77 ..      28      87 ..      14     107 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
                GB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH..--TTB------ CS
  PF02390.12 19 eqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal..glkNlrilegd 77
                 + +vl+IG+G G++ +  A  +     +GiEi  + v+++l++ +++  +   ++i++ d
  MMETSP0890-20130614|1142_1 28 TNDIVLDIGTGDGRIPIW-AVLRGARCGIGIEIDAALVRRALANGKKHglNSDRFQIIHED 87
                4559***********996.666777778*******************95534445555555 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.011      14      86 ..      29     101 ..      18     162 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.2e-05
   PF07021.7  14 gsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfed.ksfdyvvlsqtlq 86 
                 +  vld+G+GdG +  +   +    g G+e+d++ v +++a G +    + d+    +ed  + d+  ++ +l 
  MMETSP0890-20130614|1142_1  29 NDIVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKH-GLNSDRFQIIHEDiTKTDVKCITDALD 101
                 5679********98666554456679**************999542.223333222333314455555555554 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.6e-05     0.035      65     131 ..      20      86 ..       8      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.6e-05
                 HHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--..SEEEE-- CS
  PF01135.14  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle..nvivvvg 131
                 al +  l+  + vL++G+G G    + a l g+++  ++ie  + lv++a +n kk++l+  + ++++ 
  MMETSP0890-20130614|1142_1  20 ALTFAGLNTNDIVLDIGTGDGR-IPIWAVLRGARC-GIGIEIDAALVRRALANGKKHGLNsdRFQIIHE 86 
                 45555699*************6.568888888888.89******************9987555666555 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.1e-05      0.05      43     102 ..      29      89 ..      19     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.1e-05
  PF03602.10  43 garvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealklee.evavlredaa 102
                 +  vLD+  G G + + A+ Rga+  + +e d++ v+   +n ++ +l++ +++++ ed +
  MMETSP0890-20130614|1142_1  29 NDIVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNSdRFQIIHEDIT 89 
                 5569***************************************999999877777777654 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001     0.097       1      56 [.      33      93 ..      33     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.0001
   PF08241.7  1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle.....lvvadaeelpf 56
                Ld+G+G g++  +   r a+  +g++++++ +++a +++k++gl+     ++++d++++++
  MMETSP0890-20130614|1142_1 33 LDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNsdrfqIIHEDITKTDV 93
                8*****9999999888878999***********************99*9999999998865 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0001       0.1       1      73 [.      32     108 ..      32     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.0001
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl...kvkfvqadaralp.....feegefdlvvc 73 
                 +ld+G G Gr    ++  l +g +   ig++i++  ++ a  + +++gl   +++ +++d+++ +      + ++ +l+v+
  MMETSP0890-20130614|1142_1  32 VLDIGTGDGRIPIWAV--L-RG-ARCGIGIEIDAALVRRALANGKKHGLnsdRFQIIHEDITKTDvkcitDALDSASLMVT 108
                 79******98766666..4.45.4889*****************999999889999*****88652222245566666666 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00013      0.12      22     100 ..      22      91 ..      18     108 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
  PF01170.13  22 nlagvkegdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvg.dkiefvkadaakl 100
                 + ag++ +d +lD   G G i+I a l ga++           +g++id+ +v++a +N ++ g++ d+ ++   d++k 
  MMETSP0890-20130614|1142_1  22 TFAGLNTNDIVLDIGTGDGRIPIWAVLRGARCG----------IGIEIDAALVRRALANGKKHGLNsDRFQIIHEDITKT 91 
                 6789999999999999*****************..........9*****************9998525666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:01.23
# Mc/sec: 352.63
//
Query:       MMETSP0890-20130614|1143_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:01.00
# Mc/sec: 261.20
//
Query:       MMETSP0890-20130614|1145_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.005   14.6  16.6     0.0062   14.3  11.5    1.1  1  PF04147.7  Nop14-like family
  ------ inclusion threshold ------
      0.021   13.9  18.5      0.026   13.6  12.8    1.1  1  PF05285.7  SDA1
      0.038   13.1   2.5      0.051   12.7   1.7    1.1  1  PF11932.3  Protein of unknown function (DUF3450)
      0.054   13.0   0.4      0.071   12.6   0.3    1.1  1  PF00813.15 FliP family
        1.1    8.5  13.8      0.043   13.1   2.3    2.0  2  PF12685.2  SpoIIIAH-like protein
          5    7.6  18.7        2.5    8.6   2.9    2.1  2  PF08555.5  Eukaryotic family of unknown function (DUF1754)
        9.6    4.3  20.3         12    3.9  14.0    1.1  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3  11.5   3.2e-06    0.0062     348     425 ..      29     140 ..      16     164 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.2e-06
   PF04147.7 348 edeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee..........................................aseeeaeakkkkkktkkkkksaeetkeelpftfpcP 425
                 +de+ dd    ++++d d+de+++d+ +ee ddeee+ +e+e                                          a+ee+a++k k +++k+++k++++t        ++ 
  MMETSP0890-20130614|1145_1  29 DDEDPDD-GGGDDDDDDDDDEDDDDDGSEEVDDEEETVTEAEpelifgiekavlirlvvmsaltlvmntmlpkpsdvadrhlkkAAEEAAAKKAKVEEVKQQEKESSSTT-------TTA 140
                 2222222.222344444555555555555556666655555579*********************************888764222222222222222222222222222.......222 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  12.8   1.3e-05     0.026      92     175 ..      29     146 ..      16     165 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   PF05285.7  92 eseedddeeWdvdsdeededeDeegewvdvesdeee.e..................................ssDsedeeeeseeeeeeeesekkkkeesdeekseeeeeeaaeeeeee 175
                 ++e+ dd++ d d+d++d+++D++++ ++v+++ee                                      sD  d + ++ +ee+ ++++k ++ +++e++s++++ ++a++ e+e
  MMETSP0890-20130614|1145_1  29 DDEDPDDGGGDDDDDDDDDEDDDDDGSEEVDDEEETvTeaepelifgiekavlirlvvmsaltlvmntmlpkPSDVADRHLKKAAEEAAAKKAKVEEVKQQEKESSSTT-TTATTTEDE 146
                 2333333333444555555555566666666654442245677888888888888888888888888888777777777665554544444444444433333333333.333333333 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.7   2.6e-05     0.051       6      75 ..      84     153 ..      78     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.6e-05
   PF11932.3   6 allvallllaaaavaaasldqaqeaeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndq 75 
                  +++++l l+++++  ++ d a+   +ka ++aa+ ++k++++++q++e  +   ++++  ++l+++++ 
  MMETSP0890-20130614|1145_1  84 LVVMSALTLVMNTMLPKPSDVADRHLKKAAEEAAAKKAKVEEVKQQEKESSSTTTTATTTEDELEIFEED 153
                 3446666666668889999999*******************************************99876 PP

>> PF00813.15  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   3.6e-05     0.071      42     111 ..      84     157 ..      74     165 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-05
  PF00813.15  42 vliglalfltlfvmaPvleeiyeealkpyleeei....eveealekaaeplrefllkqtrekdlalflelakee 111
                 +++  al l +++m P  +++ ++ lk+  ee      +vee+ ++ +e+ ++  +++t+e++l++f e  + +
  MMETSP0890-20130614|1145_1  84 LVVMSALTLVMNTMLPKPSDVADRHLKKAAEEAAakkaKVEEVKQQEKESSSTTTTATTTEDELEIFEEDGDDQ 157
                 45556788888888888888877777666665554444899999999999999999999999999997655444 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.0      0.11   2.1e+02      39      84 ..      39      62 ..      16      72 .. 0.36
   2 ?   13.1   2.3   2.2e-05     0.043       4      82 ..      79     145 ..      77     164 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.11
   PF12685.2 39 eassaeeseaenkaasaedqaeeeaasednpgeavltsssseksss 84
                +++ +++ ++++                      ++  s+++++++
  MMETSP0890-20130614|1145_1 39 DDDDDDDDDEDD----------------------DDDGSEEVDDEE 62
                111111111111......................111111111111 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.2e-05
   PF12685.2   4 iiitlLalmivlagylnyalnkdkdnkasvaaesseassaeeseaenkaasaedqaeeeaasednpgeavltsssseks 82 
                  +++ L++m +l  ++n++l k +d +++  ++++e++ a++++ e+ ++++++++            + +t+++++++
  MMETSP0890-20130614|1145_1  79 AVLIRLVVMSALTLVMNTMLPKPSDVADRHLKKAAEEAAAKKAKVEEVKQQEKESS------------STTTTATTTED 145
                 67899**********************99999999888888777776655544332............22222222222 PP

>> PF08555.5  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.9    0.0013       2.5      54      84 ..      37      69 ..      19      71 .. 0.73
   2 ?    5.0   4.6     0.018        35      12      53 ..     109     149 ..     102     164 .. 0.39

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0013
   PF08555.5 54 a..esekdkeeeekeseekkekeeeqenlTeAE 84
                +  ++++d+++e+++++ ++e ++e+e+ TeAE
  MMETSP0890-20130614|1145_1 37 GgdDDDDDDDDEDDDDDGSEEVDDEEETVTEAE 69
                133567888888888889999999999*****9 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.018
   PF08555.5  12 LKgkkikkkvkKkkkkkkkkskekkekekekeeeeksskesd 53 
                 LK+++++    Kk k +  k++ek++  ++++  +++++ + 
  MMETSP0890-20130614|1145_1 109 LKKAAEEA-AAKKAKVEEVKQQEKESSSTTTTATTTEDELEI 149
                 45555332.333333333333333333333333333333332 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  14.0    0.0062        12     256     338 ..      29     146 ..      22     164 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0062
                 ...XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX....................................XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 256 dDdkkkkrggdddadeydsddGddegrEedyisDdsasendpe....................................eredklseEeeekkeieq.dedeeekeeekkeeegklskkk 338
                 dD++    ggddd+d++d +d dd g Ee  ++D+++   + e                                    +r  k++ Ee + k+ ++ + +++eke+ ++      ++++
  MMETSP0890-20130614|1145_1  29 DDEDPDDGGGDDDDDDDDDEDDDDDGSEE--VDDEEETVTEAEpelifgiekavlirlvvmsaltlvmntmlpkpsdvaDRHLKKAAEEAAAKKAKVeEVKQQEKESSSTTTTATTTEDE 146
                 45555566788888888899999999998..57887776666667**********************99999999988855444444444433334303344444444443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1894  (0.138531); expected 273.4 (0.02)
Passed bias filter:                     1048  (0.076653); expected 273.4 (0.02)
Passed Vit filter:                       157  (0.0114833); expected 13.7 (0.001)
Passed Fwd filter:                        49  (0.00358397); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.88u 0.43s 00:00:01.31 Elapsed: 00:00:01.47
# Mc/sec: 270.61
//
Query:       MMETSP0890-20130614|1144_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.039   13.8   5.7        3.3    7.6   0.1    4.0  4  PF01833.19 IPT/TIG domain


Domain annotation for each model (and alignments):
>> PF01833.19  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1   0.00024       3.3       3      40 ..      47      83 ..      45     125 .. 0.76
   2 ?    1.8   0.0     0.015   2.1e+02      16      36 ..     169     189 ..     157     206 .. 0.73
   3 ?   -2.0   0.0      0.24   3.3e+03      16      27 ..     278     303 ..     267     318 .. 0.67
   4 ?    4.3   0.3    0.0026        35      16      61 ..     377     422 ..     363     471 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00024
  PF01833.19  3 issisPnsgsssgGttititGsnFgtdsedssvtiggt 40
                + s s ++++++    ++itG++F+t+   +++++g++
  MMETSP0890-20130614|1144_1 47 VESTS-SQNVYQSSKSLIITGTGFNTTAALNTLKWGNS 83
                55666.667777799*********88877777777775 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.015
  PF01833.19  16 GttititGsnFgtdsedssvt 36 
                    + itG++F+ +  ++s+t
  MMETSP0890-20130614|1144_1 169 THELWITGRGFTRGAYTTSLT 189
                 66899******5555555555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.24
  PF01833.19  16 GttititGsnF..............g 27 
                  ++++i+G+++              +
  MMETSP0890-20130614|1144_1 278 VRKLIISGTGLcsdaylefqpplskD 303
                 57899999999655555555555444 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0026
  PF01833.19  16 GttititGsnFgtdsedssvtiggtectvtvsvsstsivcttPpgs 61 
                   +++itG +F++d ++++++  + ++  + s+++t+iv+ + +g+
  MMETSP0890-20130614|1144_1 377 TKKLVITGAGFSIDGTELQLNPTSRSAYEIDSITPTEIVLALKQGK 422
                 6789*******99988888888888887777999999977665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.41s 00:00:01.45 Elapsed: 00:00:00.97
# Mc/sec: 1798.50
//
Query:       MMETSP0890-20130614|1146_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   53.5  11.0    3.2e-14   53.2   7.6    1.2  1  PF04979.9  Protein phosphatase inhibitor 2 (IPP-2)
  ------ inclusion threshold ------
       0.64    9.7   4.7       0.91    9.2   3.3    1.5  1  PF08615.6  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
        4.9    7.6   8.4        1.9    8.9   0.1    2.2  2  PF04233.9  Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> PF04979.9  Protein phosphatase inhibitor 2 (IPP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   7.6   6.9e-18   3.2e-14       4     117 ..      33     142 ..      27     152 .. 0.63

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 6.9e-18
   PF04979.9   4 qkwDemnilatyhpadkdYglmkidePktpYhrliededslseseseesldaeeLaekl..aaaessepsvsaeeeesee..eeeeelsleekekkreFeekRKlHYnEflniklark 117
                 ++wDe+ i  + h++d++ ++mk+deP+tpY++  e ed ++e+    +  +++La++    a++ ++ +  ++e+e e   e  e+  ++++ek r F  kR+ HYnEf+ +k  r+
  MMETSP0890-20130614|1146_1  33 ITWDEEVI--ASHDKDRG-TRMKVDEPETPYMYP-EPEDMIDEE---VKAPPQTLANNWdeIAEKLKQAAQAQKEKEPEArlEWVEK-MEQHEEKARAFADKRRQHYNEFERLKQWRE 142
                 79******..99*9***8.9************66.555555443...3344555555554222222222222222222222244555.466779999****************95444 PP

>> PF08615.6  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.3    0.0002      0.91      75     122 ..      60     151 ..       5     153 .] 0.57

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0002
                 E............................................EB--BSSS---S-SGGG-----B----EE-SEEEE---BS--.---S CS
   PF08615.6  75 g............................................sddeqeeeddedgegeetartksleptaefqsftlWghDgapeggde 122
                                                               + e  e++++ +e+   + +k  + ++ef+ +  W+ D++ + +de
  MMETSP0890-20130614|1146_1  60 YmypepedmideevkappqtlannwdeiaeklkqaaqaqkekepeARLEWVEKMEQHEEKARAFADKRRQHYNEFERLKQWREDKQAQVDDE 151
                 15555555555555555555555555555444433333333222222222233334444444555555*******************99997 PP

>> PF04233.9  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00042       1.9      68     102 ..      30      64 ..       5      79 .. 0.84
   2 ?    1.3   2.8     0.095   4.3e+02      19      65 ..      86     135 ..      74     151 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00042
   PF04233.9  68 ryvavkdsrtrpeHaaldGkvfkvddpfwqtgapp 102
                 r + + d+ + ++H +  G+ +kvd+p+  +++p+
  MMETSP0890-20130614|1146_1  30 RGKITWDEEVIASHDKDRGTRMKVDEPETPYMYPE 64 
                 55677899********************9999985 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.095
   PF04233.9  19 elakelkkr....gqlssrsrlrtiartetlraynaarlaq.eaaskevkke 65 
                 e+a++lk+      +  + +rl+++ + e++   + ar+   ++++ ++++e
  MMETSP0890-20130614|1146_1  86 EIAEKLKQAaqaqKEKEPEARLEWVEKMEQHE--EKARAFAdKRRQHYNEFE 135
                 56666666644443334777888888888887..444443333334444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1675  (0.122513); expected 273.4 (0.02)
Passed bias filter:                      782  (0.0571972); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.46s 00:00:00.98 Elapsed: 00:00:00.64
# Mc/sec: 572.88
//
Query:       MMETSP0890-20130614|1148_1  [L=1711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-88  297.5   0.6      4e-47  160.6   0.0    5.2  5  PF00982.16 Glycosyltransferase family 20
    1.4e-39  135.3   0.0    3.7e-39  133.9   0.0    1.8  1  PF02358.11 Trehalose-phosphatase
    5.7e-11   41.7   0.0    1.3e-10   40.5   0.0    1.6  1  PF00686.14 Starch binding domain
  ------ inclusion threshold ------
      0.029   13.8   0.1       0.17   11.3   0.0    2.3  3  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00982.16  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.6e-09   1.2e-05      47     108 ..     320     382 ..     284     401 .. 0.67
   2 !  160.6   0.0   1.2e-50     4e-47     116     272 ..     500     658 ..     487     663 .. 0.94
   3 !   20.7   0.0   3.1e-08   0.00011     270     344 ..     683     759 ..     668     769 .. 0.70
   4 !   41.0   0.0   2.2e-14   7.5e-11     303     399 ..     772     866 ..     770     880 .. 0.88
   5 !   44.6   0.1   1.8e-15   6.2e-12     392     473 ..    1099    1179 ..    1087    1180 .. 0.95

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.6e-09
                 --EE--------TTS.--EEEE...-.---EEEE----HHHHHHHTTTHHHHTHHHHHTT-GG CS
  PF00982.16  47 vvwvgwlgvevdeseeakekvskele.ekfsvvpvllseekveeyyngfsnsvLWplfHYklp 108
                 v+ vg ++++ ++  ++++++  +l      +++++l++++++ yy+ f++ vLWp+fH  l+
  MMETSP0890-20130614|1148_1 320 VTRVGLARIPDNTTAAERQQLATTLRrAPWFCIAIFLDRDTYNMYYHTFCKGVLWPVFHNSLE 382
                 44566666666666553444443333033459***************************7766 PP

  == domain 2    score: 160.6 bits;  conditional E-value: 1.2e-50
                 --HHHH---HHHHHHHHHHHGGG--TT-EEEEBSGGGTTHHHHHHH----SB---B--S----HHHHTTSTTHHHHHHHHTTSSEE---SHHHHHHHHHHHHHHS-EEEETTTE...EEE---EEEE--------HHHHHHHH-.----HHHHHHHHHT CS
  PF00982.16 116 fersawdaYvkvnklFAdkivevikdgdliwvhDYhLmllPellrkklsdakigfflHiPFPsseifriLpvreeiLegllgadliGFhtedyarhFlsccsrllgleveserg..gveykgrkvsvkalpigidverlesalkkesvsekvkelkerf 272
                   ++aw+aY++vn++F +++ve +++gdliw+h ++L llP ++ ++l  akig flH+PFPsseifr+L++r+e+++g+l+ad +GFh ++yarhFl +++rl++++++ + +   ++++gr+v v+ ++ g+++++l++ +++++  + v++l+ ++
  MMETSP0890-20130614|1148_1 500 RIEKAWRAYKRVNQIFREHVVEAYNEGDLIWIHGFQLSLLPAFVSRRLTVAKIGIFLHTPFPSSEIFRTLSMRNELIRGILSADQVGFHLYEYARHFLTTARRLVRARYSYDARgpVLNVDGREVVVSCIHGGVEPADLADVASTPAGIRAVQRLRADL 658
                 55799*****************************************************************************************************99999887789****************************99999999998775 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 3.1e-08
                 HHT.TTSEEEEEE--B-TT---HHHHHHHHHHHHH-GGG---EEEEEE-...-B-----HH.HHHHHHHHHHH------ CS
  PF00982.16 270 erfekkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqia...vpsredvee.yqeleseveelvgrINg 344
                 +  ++++++i g D+l++++G++ klla+e+fL ++ +  +k   +       ps +d+    ++ + e+e+ v+ +N 
  MMETSP0890-20130614|1148_1 683 H--QRETRIIAGIDKLERLRGLPLKLLAYEQFLDARKQRFEKSPTLRKRedkEPSLKDHTPdNNTKNDETEQFVHTVNA 759
                 3..44569***************************99998887666543111344444443134444566666666665 PP

  == domain 4    score: 41.0 bits;  conditional E-value: 2.2e-14
                 HH-GGG---EEEEEE--B-----HHHHHHHHHHHHH--------------SEEEE-S.---HHHHHHHHHH--B--B--S-----HHHHHHHHHS-T- CS
  PF00982.16 303 eeypelrgkvvlvqiavpsredveeyqeleseveelvgrINgefgtldytPvvfler.sldfeelialyaaadvllvtslRdGmnlvakeyvvcqqek 399
                 ++y + + +vvlvq +++s e++e+ ++ +++ e + +rI  + g +    +v+ e   l+  + +al++ adv++v+s+RdG+n  ++eyv++q+++
  MMETSP0890-20130614|1148_1 772 KDYTDNDARVVLVQYVISSFERNEDCERTRRDSETICERIRAKHGADC---LVWREVpALKIVDRLALLKLADVFWVSSVRDGLNRWPLEYVAMQSDN 866
                 567788899************************************998...44444436788999******************************983 PP

  == domain 5    score: 44.6 bits;  conditional E-value: 1.8e-15
                  HHHHS-T-----EEETT---TTT-TTS.EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  PF00982.16  392 yvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflselk 473 
                     c++ + g+L+LSe a +a++L  +a  vNPw ie+ a+a+++ L m   er +r+    +++s+ + ++Wa  +l++lk
  MMETSP0890-20130614|1148_1 1099 HARCRSRRMGTLLLSENASTARVLL-GASSVNPWRIEHSAKALEKILGMRCRERMSRHAVDAEYLSRATTSKWAYRVLHDLK 1179
                  56799********************.77***************************************************997 PP

>> PF02358.11  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   1.1e-42   3.7e-39      19     233 ..    1295    1580 ..    1264    1582 .. 0.88

  Alignments for each domain:
  == domain 1    score: 133.9 bits;  conditional E-value: 1.1e-42
  PF02358.11   19 vpsdellslLkkLasdpknvvaiiSGrslee.....edlfvkvpelglaaeHGafirspsgeswtn.........................................................qaevedlewlkevaeileektertpGsyvEekkfalavHyrnaddefgelqakelaehlesvlk...dnpdlevtqgkk.....vvevrpvgvsKGkaverlleelgsanseddfvlciGDdrtDedmFkvlnktkesgleievsavsv..gskpskakysldd 233 
                  +psde++s+L  La+dp n+v+i+SGr++++      d +   p+lglaaeHG+f+r+p+    t+                                                         ++++++ +w++ v   ++ +t+rt+G y+E+ +++l++ +r+ad+++ge+qakel+ +l +vl+    n   ++ +g +      vevrp+gv KG+ + rll+ l  a  + +f+l +GDd +De+mF  l +  + + ++++sa sv  g+kps a +++d+
  MMETSP0890-20130614|1148_1 1295 NPSDEVKSALISLATDPTNIVFIVSGRERADlvdslGDVLEAAPDLGLAAEHGFFVRWPRVLRNTSspavgrklysgrghshddvnlaieesiqtrkfrslssgddqrqtilstnddewerpfSTLNDAAPWRDAVFSTMDIFTQRTQGTYIEKHESSLVWQFRDADPDYGEMQAKELEHQLGDVLQpftLN-RPQILRGENpsrggYVEVRPSGVDKGAFLSRLLRVLSAASRPASFALVVGDDESDESMFHALSNWTKDKSSDSISAYSVciGKKPSGAVSYVDS 1580
                  79******************************6555555566799****************88777**********************************************************************************************************************98722223.445666654444448************************************************9885555555555554449999999888776 PP

>> PF00686.14  Starch binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   3.9e-14   1.3e-10       4      80 ..       6      82 ..       4      91 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 3.9e-14
                EEECES-------EEEEE---TT-----SSS-EETCEEE--TTTTCEEE..EEEEETT-EEEEEEEEE-----EEE-SS CS
  PF00686.14  4 vtfkvnattqlgenvyivGnvpeLGnWdpakaiklsaseetssyplWsg..tvslpagteieyKyikkdsdgsvtWesg 80
                v+f ++a   +ge++ ++G+ p+LG+ dp+k++++++s+   syp+W++   v + +  e++y+y + + ++ ++We +
  MMETSP0890-20130614|1148_1  6 VEFVAYAPLDFGETLSVCGEFPKLGSNDPNKGVQMTTSSS--SYPIWRVsePVAFHPHIEVKYRYAILRGGKFHRWETN 82
                7888889999**************************9955..*******888999****************9*****74 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.99   3.4e+03     115     166 ..     724     777 ..     681     788 .. 0.68
   2 ?   -2.9   0.0         1   3.5e+03       2      44 ..    1264    1325 ..    1263    1331 .. 0.68
   3 ?   11.3   0.0   4.8e-05      0.17     172     220 ..    1496    1547 ..    1431    1557 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.99
                 HHHHHHCCCTSCEEEES-HCCHS-S--SEEE..EE--GGGHHHHHHHHHCCTTT CS
   PF08282.7 115 kkakeeeknkkkkeekkeeeelededinkil..iledkedldelekelkeelnk 166
                  + +++e+++   ++ + ++++++++  +++  ++++ e++++ + ++k+   +
  MMETSP0890-20130614|1148_1 724 PTLRKREDKEPSLKDHTPDNNTKNDETEQFVhtVNATLEKIENDFPDIKDYTDN 777
                 445555555555555566666666666666666666667766666666665554 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1
                  EE------S-..................TTS---HHHHHHHHHHHH.TT-EEEEEESS-HHH CS
   PF08282.7    2 asDlDGTLln..................sdkkiseetkeaikklqe.kgikvviaTGRslse 44  
                  ++D  GTL+                   s  + s+e k+a+  l       v+i++GR+  +
  MMETSP0890-20130614|1148_1 1264 VLDYGGTLVPdtaatdnithyeiahgarSSPNPSDEVKSALISLATdPTNIVFIVSGRERAD 1325
                  66667777776666666666666666666667788888888777652556678999998765 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 4.8e-05
                  EEETTEEEEEE----HHHHHHHHH...HHTT--GGGEEEE----TTHHHHHH CS
   PF08282.7  172 sssegsleiipkgvsKgtalkkla...kalnisleeviafGDgeNDieMLel 220 
                   s  g++e+ p gv+Kg  l++l+   +a + + +  +++GD+e D +M+ +
  MMETSP0890-20130614|1148_1 1496 PSRGGYVEVRPSGVDKGAFLSRLLrvlSAASRPASFALVVGDDESDESMFHA 1547
                  57789***************99993334555677889*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.32u 0.46s 00:00:02.78 Elapsed: 00:00:01.59
# Mc/sec: 2578.72
//
Query:       MMETSP0890-20130614|1149_1  [L=1117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-61  207.1   0.0    2.2e-61  206.3   0.0    1.4  1  PF02779.19 Transketolase, pyrimidine binding domain
    6.3e-47  159.6   0.0    1.2e-46  158.7   0.0    1.4  1  PF00676.15 Dehydrogenase E1 component
    6.9e-16   57.5   4.8    1.4e-15   56.5   3.3    1.5  1  PF00364.17 Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0   4.8e-65   2.2e-61       2     178 .]     731     948 ..     730     948 .. 0.99

  Alignments for each domain:
  == domain 1    score: 206.3 bits;  conditional E-value: 4.8e-65
                 EEEHHHHHHHHHHHHHCC-TTEEEEESS-HHHHTTHHHHHHEGG-.................-EGEEE--S-HHHHHHHH---TTCGT.SEEEEEECEHHHHG..HHGGHHHHHHHHHHTT---EEEEEEE--------TSS-SSHHHHHCTSTT.......................-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEEC.T CS
  PF02779.19   2 kiawrkaeaealaellkedpevvllgaDvargtfsvrkgllhdqg.................egrvidsgisEqamlgfavGaalagp.llviweaqfgdFangAqiyadqairsgeakgklpvgvvtrlpigvgedGpehqsaeleaflrlipg.......................lkvvrPsdpaetkgllrraieredrkPvvlrlpkqllrhk 178
                 +i+w+ ae++al++ll e+  v+ +g+Dv+rgtf++r++++hdq+                 +  + +s++sE+++lgf++G++l+ p  l+iweaqfgdF+ngAqi++dq+++sgeak+++++g+v++lp+g++++Gpeh+s+++e+fl+  ++                       +++++P++pa+++++lrr+ +re+rkP++++ +k llrhk
  MMETSP0890-20130614|1149_1 731 EINWALAEQLALGTLLMEGIPVRFTGQDVERGTFTHRHAVVHDQNngkthtflnaihpaqeaQLYIKNSFLSEYGCLGFELGYSLETPnVLIIWEAQFGDFVNGAQIIIDQFLSSGEAKWMRQSGLVLLLPHGYQGQGPEHSSCRIERFLQNSDEdpdvipanldtvegqtrqvqlnnWQIINPTTPANYFHALRRQQHREFRKPLIVASTKALLRHK 948
                 799*********************************************************9888889*****************************************************************************************************************************************************96 PP

>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0   2.6e-50   1.2e-46       2     288 ..     328     654 ..     327     661 .. 0.89

  Alignments for each domain:
  == domain 1    score: 158.7 bits;  conditional E-value: 2.6e-50
                 HHHHHHHHHHHHHHHHHHTTSSS--------HHHHHHHHHCS-TT..SEEE--.SS-HHHHHHTT--..HHHHHHHHHT-T.......................T-TT----.TT---BTT--B----S--SHH..TTHHH--HHHHH.....H------EEEEE----.TTSHHHHHHHHHHHHCT--E...EEEEEE-SEETTECGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EEEEEE-------STT--GGGTS-CHHHHHHHHCC-HHHHHHHHHHHTT.SS-HHHHHHHHHHHHHHHHHHH CS
  PF00676.15   2 klmllrrmedalaalykrkkrigfvhlsagqealqvgiaaaleke..Dlvist.YRehgvllargvs..leevlaeltgke.......................kgkggsmh.eisyaekksrflggngivgaq..vplvaGialaak.....yegkkevailliGDGa.tnqGqffealnlAalwklpv...ifvveNNqyaisteaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvLielvtYRyggHsesDdpstyrtreeveevrkkkdpikrlkehlvkkg.vvseeelkeiekevrkeieeav 288
                 +l+ + ++e+ la +++  kr+g++ +++  + +++ +++a   +  D++i + +R++ ++l ++v+  +e ++ e+ g +                       k+++g    + +   +  ++  ++++++++   plv G a+a        +gk+ + +l++GD+a ++qG+++e+l + +l  +++   i+v+ NNq +++  +e+++++ ++++ ++++ +p+++V+++D++ v  + + A+ +++e++ +v+i+l++YR +gH+e D+p++++ ++++++++ +++ ++++ +  ++++ ++s++e + +++ +     +a+
  MMETSP0890-20130614|1149_1 328 RLAYSEKFEQVLATKFNTAKRFGLEGCESMIPGMKTMVDHATLLGvqDIIIGMpHRGRLNVLCNVVRkpVEVIFREFLGTQhihalklggeakheedwsssgdvKYHLGTSFeRAYPDGRRVQIEVLPNPSHLEavDPLVVGKARARMdmkndNQGKTVLPVLIHGDAAfAGQGIVYETLQMYNLDAYQCggtIHVICNNQVGFTAIPEQGRSTMYASDLGKAFDAPIFHVNADDPENVCRVFQLAVAWRQEFHTDVVIDLIGYRKYGHNEIDEPTFTQ-PKMYQKIKTHPTALEIYLDVCTSTNpYISKDEANSVINDAVSTFSKAY 654
                 6677889999***************************9988554444****999************998999**************************7777776776666545555555556666666666666699****99998888898999999************************************************************************************************************************.*****************9998876547888888887777666666665 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   3.3     3e-19   1.4e-15       2      73 ..      10      81 ..       9      82 .. 0.97

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 3e-19
                EES-S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEE CS
  PF00364.17  2 eiksPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 73
                ++++P++G s++e+t+v+    vGd V+a++v+a++e++K+ +e+ apkaGv+k+  v+ +dtv+vg+ +++
  MMETSP0890-20130614|1149_1 10 KVEVPSMGDSITEATIVSLSHTVGDGVAADEVVAVLETDKVAVEVHAPKAGVLKQYFVQIDDTVSVGQEICI 81
                689*****************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:00.92
# Mc/sec: 2909.49
//
Query:       MMETSP0890-20130614|1154_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 320.74
//
Query:       MMETSP0890-20130614|1156_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-34  118.0   3.1    2.8e-34  117.7   2.1    1.1  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   2.1   2.1e-38   2.8e-34       1     126 [.      10     131 ..      10     133 .. 0.97

  Alignments for each domain:
  == domain 1    score: 117.7 bits;  conditional E-value: 2.1e-38
  PF02466.14   1 sclektvlagvagfalGavyGlfmrsmhaatklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleglrgkndllnsvaAGaltGavlarrggpqaaavgaagfaafsaaiealgr 126
                 +c++++++++++++a+Ga++G +++++    k +r++p ++ l++ + +m+ r+p ++ nfav+g++++ ++c l+ +r+k+d++ns++AGa+tG+vla+r+gp+aaa +a+++++++a+ie+lg 
  MMETSP0890-20130614|1156_1  10 PCPYRIIDDVGGAYAMGAIGGSIWHFV----KGWRNSPRGSALAGAVDQMQVRAPIVGGNFAVWGGLFAVFDCSLSAVRQKEDPWNSILAGAATGGVLAARAGPKAAAKNAVVGGILLALIEGLGI 131
                 6************************65....99*****************************************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 654.24
//
Query:       MMETSP0890-20130614|1157_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-15   56.3   0.0    3.2e-15   55.5   0.0    1.4  1  PF02823.11 ATP synthase, Delta/Epsilon chain, beta-sandwich domain


Domain annotation for each model (and alignments):
>> PF02823.11  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.4e-19   3.2e-15       3      80 .]      36     114 ..      34     114 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.4e-19
                 EEEB-SS-B-----.-S---B------B--------------SS---B-.-----B--B-----EEE-SSEEEE--SS- CS
  PF02823.11   3 leivtpervvfsge.veevvapgeeGefgilpgHaplitaLkpgvlriktedgeeesiavsgGflevqdnkvtilaeea 80 
                 ++++ p+ ++  +e v+ v++pg++Ge g+  gH pl  +L+ g+++i ++++  e++++sgGf+  +++k ++ + ea
  MMETSP0890-20130614|1157_1  36 FSLTAPHASICFQEpVDLVQLPGANGEYGVTVGHSPLAEQLNSGIVTIVRTGEAPEKYFISGGFALTDEKKTEVSVAEA 114
                 567778877766666*******************************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.94
# Mc/sec: 423.19
//
Query:       MMETSP0890-20130614|1155_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-123  413.1  10.9   6.5e-119  397.6   4.4    2.1  2  PF00183.13 Hsp90 protein
    4.4e-14   52.1   0.6      1e-13   51.0   0.4    1.6  1  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    5.4e-11   42.0   0.3    1.2e-10   40.9   0.2    1.5  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
  ------ inclusion threshold ------
      0.017   14.5   0.2      0.032   13.6   0.1    1.5  1  PF09438.5  Domain of unknown function (DUF2017)


Domain annotation for each model (and alignments):
>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.7   2.1e-08   7.2e-05       1      40 [.     254     292 ..     254     298 .. 0.88
   2 !  397.6   4.4  1.9e-122  6.5e-119      69     506 ..     284     729 ..     279     736 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.1e-08
                 GGGSHHHHHHHHHHHHTT-SS-EEEEEEE---------XX CS
  PF00183.13   1 eyleekklkelvkkhsefisypiklvvekevekevpdeee 40 
                 eyle+ kl  l+kk+sefi +pi+l+ +k++e e+ +++e
  MMETSP0890-20130614|1155_1 254 EYLEDYKLSTLLKKYSEFIDFPIELL-QKTTEYEMNEKNE 292
                 8***********************97.6888888877665 PP

  == domain 2    score: 397.6 bits;  conditional E-value: 1.9e-122
                 ...XXXEXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHCCCTTTSXXSEEEEEEEXXXXXEEEEEEEXSSXXSTTTXXX..XXXXXSXEEETTEEEESSX.TTSSXGGGTTXEXEEEESSSXSSSXCCCCCTXHHHHHHHHHHHHHHHHHHHCCHTCHHHHHCHHHHHHHCCCXXXXSXC..CCHHHHHTTXEEEETTEEEEEEEHHHHHHCSXTTXX.......EEEEEXXXXHHHHCCSCCHHHHHHTTXXEEEXXSCCHHHHHHCHSBXXXXEEEETTBX.X.XXXXXHHHHHHHHHHHHHHHHHHHHHHH.TTTTTESEEEEXSSXSSXSEEEEBXXXXXXXXHHHHHHHHHHH...XXTSXSSSSXXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHHHXXXXXSXTTTXXXHHHHHHTTTTHXXSTTTTTTG CS
  PF00183.13  69 eeekkkktkkvkettteeellnktkpiWtrnpkdvteeeyaafyksltndwedplavkhfsveGqlefkallfvPkraPfdlfesk..kkknniklyvrrvfitdda.edliPeylsfvkGvvdsedlPlnvsretlqqnkilkvirkklvkkalelikeiaedkedykkfyeefskniklGiheda..anrkklakllrfestksedelvslkdyvtrmkeeqk.......kiyyitGeskkqvekspflerlkkknyevlyltdpvdeyaiqqlkefegkklvnvtkeGl.eleeseeekkkreelkeefeeltkllke.iledkvekvvvsnrlvdsPcvlvtskyGWsanmerimkaqalr...dssksaymsskktleinPkhpiikelrkrveedkedksvkdlvvllyetallesGfsledpkefasrierliklglsidedeeveee 506
                 e e ++k+ +v  +++e++++n +kp+W+rnpk+ +  eya+fy+s  + ++dpl ++hf+ eGq++f+allfvP   Pf+l  +   +++  +klyv+rvfi d++ e+l+P +lsf++G+vdsedlPlnv re lq++k+l +i+k+lv+k+l+l+ ei +++ +y+ fy++f+k +k+Gi+e++  + +k+lakl++f+ t+++ e+++l+dyv+ +k++q        ki y++Ge +k++e sp lerlkk ny+vl+lt+p+de ++q++  f+g ++++ +++ + +    +   +++e+++e+f++l   + + + +dk+  v++s+rl+dsP++lv + yG s  m++ m+a a      +   +y  +k t+einPkhpii +l+k+ ++        +++ ll++ a l+sG+ ++d+ +fa+r++ l+ ++ s ++  +++++
  MMETSP0890-20130614|1155_1 284 EYEMNEKNETVPVSKNEYNIVNSMKPLWLRNPKECNASEYAQFYRSAFRAFDDPLRYSHFALEGQVQFRALLFVPSILPFELSRNMfdENNRAMKLYVKRVFINDKFtEELLPRWLSFLRGLVDSEDLPLNVGREILQKSKMLSIIKKRLVRKSLDLFFEIQKNQTEYDSFYQNFGKYLKVGIVEEQgdNTQKELAKLIKFYVTEQT-ETITLTDYVESIKSSQAnknisqlKILYVSGEGRKAAEASPVLERLKKENYQVLLLTEPLDELVVQAIGSFDGLEIADASRDDVlDNLFPDTATDDEEDEDESFDDLKSFITNtLGNDKISTVKISKRLTDSPAALVQGAYGMSPMMQKYMQANAAAingGTMDPTYGVAKPTMEINPKHPIILKLKKHPDT--------ETAYLLFDLASLTSGYDIQDTAAFAKRVNYLLISSTSPNDSLNKTDD 729
                 3456678999999*********************************************************************999865666679************8468*************************************************************************99873234678********99876.5678*********9874223333369*******************************************************97622223466667889999********99997889***********************************99876433444568*****************999987654........579**************************999887765554443322 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.4   2.9e-17     1e-13       7     107 ..     102     222 ..      95     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 2.9e-17
   PF13589.1   7 iaelvdNsldAdatn.............vkisidedkkekseisieDnGkGmskeelvn.alklgrsskdeek.....eekt.....lGrkGiGmklAslklgrkvtviskkegekstltldvek 107
                 + elv N+ dA  ++               i i  d kek+ ++ieD G Gmskeelvn   k++ s +++       +  +     +G++G+G  ++ + +++++tvi++++++  t+ +++++
  MMETSP0890-20130614|1155_1 102 LRELVSNAADACDKKkflsltggdaidsMRIRITPD-KEKKVLIIEDTGIGMSKEELVNtLGKIAMSGTKKFAealgeT--KgdvnlIGQFGVG-FYSGFLVADTMTVITRTKEDGGTYFWKSDA 222
                 78********9988889*********9*77777776.4789******************65577666555433234331..245666*******.*********************999999874 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.2   3.5e-14   1.2e-10      10     105 ..     102     218 ..      98     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 3.5e-14
                 HHHHHHHHHHHHHHH...........SEEEEEEEEECTCEEEEEEE-----TH............HHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEE CS
  PF02518.21  10 vselvdNavkatees...........geievrvkreegelvieVeDnGiGipe............edlervfepffqtdddsrkvggtGlGlsivkklvellggeieveskeggGttvt 105
                 ++elv+Na +a++++           +++++r+++++++ v+ +eD+GiG+++               ++  e+ + t++d + +g++G+G+++  ++++++ + i+ + + +gGt ++
  MMETSP0890-20130614|1155_1 102 LRELVSNAADACDKKkflsltggdaiDSMRIRITPDKEKKVLIIEDTGIGMSKeelvntlgkiamSGTKKFAEALGETKGDVNLIGQFGVGFYSGFLVADTMTV-ITRTKE-DGGTYFW 218
                 79***************************************************877766666665444444445555566************************.677777.9999988 PP

>> PF09438.5  Domain of unknown function (DUF2017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.4e-06     0.032      59     104 ..     568     614 ..     524     628 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.4e-06
   PF09438.5  59 eaPedpaLaRLLPdfyrdddeas.gdaselRrlteedlleaKlaaar 104
                 +a +d++L  L+Pd  +dd+e++ ++  +l+++ +++l + K+++ +
  MMETSP0890-20130614|1155_1 568 DASRDDVLDNLFPDTATDDEEDEdESFDDLKSFITNTLGNDKISTVK 614
                 5678******************955559**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:01.01
# Mc/sec: 1748.63
//
Query:       MMETSP0890-20130614|1159_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-38  128.5   0.8    8.2e-26   89.6   0.0    2.0  2  PF13424.1  Tetratricopeptide repeat
    1.2e-28   97.9   0.2    7.8e-12   44.5   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    8.5e-17   59.8   3.9    4.6e-08   32.2   0.1    3.0  3  PF00515.23 Tetratricopeptide repeat
    4.2e-15   54.1   0.0    7.5e-07   28.3   0.0    3.0  3  PF13176.1  Tetratricopeptide repeat
    7.8e-14   50.2   2.4      4e-06   26.2   0.0    2.7  3  PF07719.12 Tetratricopeptide repeat
    1.6e-13   49.9   0.5    4.2e-13   48.6   0.1    1.8  2  PF13414.1  TPR repeat
    1.3e-08   33.8   1.2    0.00083   18.8   0.0    2.3  2  PF13181.1  Tetratricopeptide repeat
    2.1e-08   34.4   0.0    3.5e-08   33.7   0.0    1.4  1  PF13432.1  Tetratricopeptide repeat
    1.4e-07   31.4   0.0     0.0072   16.7   0.0    2.4  2  PF13428.1  Tetratricopeptide repeat
    2.4e-06   27.2   0.2      0.042   13.6   0.0    2.3  2  PF04212.13 MIT (microtubule interacting and transport) domain
    3.1e-06   26.8   6.9      0.041   13.9   0.5    3.7  3  PF13431.1  Tetratricopeptide repeat
    9.2e-05   22.3   0.0    0.00017   21.5   0.0    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00013   21.5   0.1      0.014   15.0   0.0    2.1  2  PF10975.3  Protein of unknown function (DUF2802)
    0.00019   21.5   0.3        0.2   12.0   0.0    2.4  2  PF13174.1  Tetratricopeptide repeat
    0.00066   19.5   0.0       0.48   10.3   0.0    2.2  2  PF12688.2  Tetratrico peptide repeat
    0.00089   18.3   0.0       0.47    9.6   0.0    2.8  3  PF10516.4  SHNi-TPR
     0.0082   16.3   0.0        3.8    8.1   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   14.7   0.2       0.42    9.8   0.1    2.0  1  PF04877.7  HrpZ
      0.023   14.3   0.4        3.4    7.4   0.0    2.3  2  PF07720.7  Tetratricopeptide repeat
       0.03   14.1   0.3        6.7    6.8   0.0    3.2  3  PF01535.15 PPR repeat
      0.041   13.3   0.1        7.8    5.9   0.0    2.2  2  PF00637.15 Region in Clathrin and VPS
      0.078   12.0   0.0       0.21   10.6   0.0    1.6  1  PF07678.9  A-macroglobulin complement component


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   3.5e-14   2.2e-11      27      78 .]       3      55 ..       1      55 [. 0.94
   2 !   89.6   0.0   1.3e-28   8.2e-26       2      78 .]      20      97 ..      19      97 .. 0.98

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.5e-14
   PF13424.1 27 lyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                l+e+al++  + lg+   ++a +lnnla l++ +g+ydeA++++ +A++i ek
  MMETSP0890-20130614|1159_1  3 LCERALKIrEEMLGPSQQNVAQSLNNLAGLLENQGKYDEAKPLYVRAIKIMEK 55
                79******77788*************************************986 PP

  == domain 2    score: 89.6 bits;  conditional E-value: 1.3e-28
   PF13424.1  2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                +++a++lnnla++l+ +g+ydeA  ly +a+++  + +g++hpd+a++lnnla l++++g+ydeA +++e+A++i+ek
  MMETSP0890-20130614|1159_1 20 QNVAQSLNNLAGLLENQGKYDEAKPLYVRAIKImEKGHGPNHPDVATTLNNLAGLLEKQGKYDEAMPLYERAIKIREK 97
                789******************************9999***************************************97 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0012      0.75      23      38 ..       2      17 ..       1      21 [. 0.90
   2 !   44.5   0.0   1.3e-14   7.8e-12       1      42 []      22      63 ..      22      63 .. 0.98
   3 !   41.0   0.0   1.6e-13     1e-10       1      36 [.      64      99 .]      64      99 .] 0.97

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0012
   PF13374.1 23 aleeealairrrllGd 38
                +l e+al ir++ lG+
  MMETSP0890-20130614|1159_1  2 PLCERALKIREEMLGP 17
                799************9 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 1.3e-14
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a +lnnLA +l ++g+y+eA +l+ +a  i ++ +G++HPd
  MMETSP0890-20130614|1159_1 22 VAQSLNNLAGLLENQGKYDEAKPLYVRAIKIMEKGHGPNHPD 63
                799**************************************8 PP

  == domain 3    score: 41.0 bits;  conditional E-value: 1.6e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrll 36
                +a++lnnLA +l ++g+y+eA +l+e+a  ir++ l
  MMETSP0890-20130614|1159_1 64 VATTLNNLAGLLEKQGKYDEAMPLYERAIKIREKTL 99
                79*******************************975 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.2   1.2e+02      24      32 ..       4      12 ..       2      14 .. 0.84
   2 !   25.6   0.2   8.5e-09   5.3e-06       1      30 [.      23      52 ..      23      55 .. 0.95
   3 !   32.2   0.1   7.5e-11   4.6e-08       1      32 [.      65      96 ..      65      97 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.2
                HHHHHHHHT CS
  PF00515.23 24 yekALelnP 32
                +e+AL++++
  MMETSP0890-20130614|1159_1  4 CERALKIRE 12
                9*****986 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 8.5e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a++l+nl+ ++ ++gkydeA   y +A+++
  MMETSP0890-20130614|1159_1 23 AQSLNNLAGLLENQGKYDEAKPLYVRAIKI 52
                789*************************98 PP

  == domain 3    score: 32.2 bits;  conditional E-value: 7.5e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a +l+nl+ ++ k+gkydeA   ye+A+++++
  MMETSP0890-20130614|1159_1 65 ATTLNNLAGLLEKQGKYDEAMPLYERAIKIRE 96
                5689*************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.45   2.8e+02      22      33 ..       4      15 ..       2      21 .. 0.60
   2 !   20.9   0.0     3e-07   0.00018       1      28 [.      25      52 ..      25      62 .. 0.87
   3 !   28.3   0.0   1.2e-09   7.5e-07       1      29 [.      67      95 ..      67      99 .] 0.90

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.45
   PF13176.1 22 yeraLaltkdpl 33
                +eraL+++++ l
  MMETSP0890-20130614|1159_1  4 CERALKIREEML 15
                566666555544 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 3e-07
   PF13176.1  1 allnLarlysrlgdyekAielyeraLal 28
                +l+nLa l +++g+y++A  ly ra+++
  MMETSP0890-20130614|1159_1 25 SLNNLAGLLENQGKYDEAKPLYVRAIKI 52
                79**********************7755 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 1.2e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLalt 29
                +l+nLa l +++g+y++A  lyera++++
  MMETSP0890-20130614|1159_1 67 TLNNLAGLLEKQGKYDEAMPLYERAIKIR 95
                79**********************77666 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.6   1.6e+03      24      31 ..       4      11 ..       2      13 .. 0.79
   2 !   23.2   0.1   5.7e-08   3.5e-05       1      31 [.      23      53 ..      23      55 .. 0.92
   3 !   26.2   0.0   6.4e-09     4e-06       2      31 ..      66      95 ..      65      98 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.6
                HHHHHHH- CS
  PF07719.12 24 fekAleld 31
                +e+Al++ 
  MMETSP0890-20130614|1159_1  4 CERALKIR 11
                79999985 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.7e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a+ l+nl+ +++++g+y+eA+ ++ +A+++ 
  MMETSP0890-20130614|1159_1 23 AQSLNNLAGLLENQGKYDEAKPLYVRAIKIM 53
                5789************************996 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 6.4e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                  l+nl+ +++k+g+y+eA  ++e+A+++ 
  MMETSP0890-20130614|1159_1 66 TTLNNLAGLLEKQGKYDEAMPLYERAIKIR 95
                679************************986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         3   1.9e+03      61      67 ..       4      10 ..       2      13 .. 0.61
   2 !   48.6   0.1   6.7e-16   4.2e-13       2      68 ..      22      95 ..      21      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 3
   PF13414.1 61 yekAlel 67
                +e+Al++
  MMETSP0890-20130614|1159_1  4 CERALKI 10
                6666665 PP

  == domain 2    score: 48.6 bits;  conditional E-value: 6.7e-16
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAlel.....dpnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                +A++l++l+  l ++g+ydeA  +y +A+++      pn+++    ++nlA +++k+g +y+eA+  ye+A++++
  MMETSP0890-20130614|1159_1 22 VAQSLNNLAGLLENQGKYDEAKPLYVRAIKImekghGPNHPDvatTLNNLAGLLEKQG-KYDEAMPLYERAIKIR 95
                799***************************977666477777777*************.6************986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   5.5e-05     0.034       2      30 ..      24      52 ..      23      52 .. 0.92
   2 !   18.8   0.0   1.3e-06   0.00083       3      31 ..      67      95 ..      65      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.5e-05
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                ++++nl+ ++++ G+yd+Ak  + +a+++
  MMETSP0890-20130614|1159_1 24 QSLNNLAGLLENQGKYDEAKPLYVRAIKI 52
                7899*****************99999986 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.3e-06
                -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelk 31
                +++nl+ ++++ G+yd+A+  +e+a+++ 
  MMETSP0890-20130614|1159_1 67 TLNNLAGLLEKQGKYDEAMPLYERAIKIR 95
                689************************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   5.7e-11   3.5e-08       3      60 ..      29      94 ..      27      98 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 5.7e-11
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                lA +l ++G+ydeA +++ +a++          P+ a  l +la +l ++g++deA  l+++a+++
  MMETSP0890-20130614|1159_1 29 LAGLLENQGKYDEAKPLYVRAIKIMekghgpnhPDVATTLNNLAGLLEKQGKYDEAMPLYERAIKI 94
                8999**************99999999************************************9976 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00014     0.087       5      39 ..      27      66 ..      23      69 .. 0.85
   2 !   16.7   0.0   1.2e-05    0.0072       4      31 ..      68      95 ..      64      99 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00014
   PF13428.1  5 lalarallalGdpdeAiallrrala.....laPddaeall 39
                  la +l+++G +deA  l+ ra++     ++P+++++ +
  MMETSP0890-20130614|1159_1 27 NNLAGLLENQGKYDEAKPLYVRAIKimekgHGPNHPDVAT 66
                579********************99888777888888765 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.2e-05
   PF13428.1  4 llalarallalGdpdeAiallrralala 31
                l  la +l+ +G +deA+ l++ra++  
  MMETSP0890-20130614|1159_1 68 LNNLAGLLEKQGKYDEAMPLYERAIKIR 95
                6689********************9865 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.7e-05     0.042      15      38 ..      33      56 ..      22      63 .. 0.89
   2 !   11.9   0.0   0.00022      0.14      15      34 ..      75      94 ..      65      99 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.7e-05
                HHHTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlelLlqa 38
                 +++gky+eA  lY  A+++++++
  MMETSP0890-20130614|1159_1 33 LENQGKYDEAKPLYVRAIKIMEKG 56
                699*****************9987 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00022
                HHHTT-HHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlel 34
                 +++gky+eA  lY+ A+++
  MMETSP0890-20130614|1159_1 75 LEKQGKYDEAMPLYERAIKI 94
                699***************87 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   6.6e-05     0.041      11      33 ..      21      43 ..       3      44 .. 0.81
   2 !   13.2   0.1   0.00011     0.071       9      32 ..      61      84 ..      45      85 .. 0.88
   3 ?    1.3   0.0      0.75   4.6e+02       1       8 [.      87      94 ..      87      97 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.6e-05
   PF13431.1 11 nnadaynnLAelllnnGdleeAe 33
                n a+++nnLA ll n+G+++eA+
  MMETSP0890-20130614|1159_1 21 NVAQSLNNLAGLLENQGKYDEAK 43
                4499*****************97 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 0.00011
   PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
                +P+ a  +nnLA ll ++G+++eA
  MMETSP0890-20130614|1159_1 61 HPDVATTLNNLAGLLEKQGKYDEA 84
                6888999***************99 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.75
   PF13431.1  1 lyekalel 8 
                lye+a+++
  MMETSP0890-20130614|1159_1 87 LYERAIKI 94
                7*****97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.7e-07   0.00017       7      84 .]       6      91 ..       2      91 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.7e-07
                HHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHHHH CS
   PF12895.2  7 nAlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcryllA...rcllklgkydeAiavLeka 84
                 Al++ e++l  s+++  + +l +lA  l ++g+y++A  l+ +      + + +++++ +  l+     l+k+gkydeA  ++e+a
  MMETSP0890-20130614|1159_1  6 RALKIREEMLGPSQQN-VAQSLNNLAGLLENQGKYDEAKPLYVRaikimeKGHGPNHPDVATTLNnlaGLLEKQGKYDEAMPLYERA 91
                4555555555555533.55677778**********999888888888888999999988888553243999**********999975 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-05     0.014       6      46 ..      18      58 ..      13      61 .. 0.89
   2 ?    4.7   0.0     0.035        22      11      40 ..      65      94 ..      62      97 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-05
   PF10975.3  6 rlqeleqklkqleerleeleqqdpesrlYsrAaklvelGas 46
                  q+++q+l++l+  le+  + d++++lY rA+k++e+G  
  MMETSP0890-20130614|1159_1 18 SQQNVAQSLNNLAGLLENQGKYDEAKPLYVRAIKIMEKGHG 58
                668899999******************************75 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.035
   PF10975.3 11 eqklkqleerleeleqqdpesrlYsrAakl 40
                + +l++l+  le+  + d++ +lY+rA+k+
  MMETSP0890-20130614|1159_1 65 ATTLNNLAGLLEKQGKYDEAMPLYERAIKI 94
                5667777777888888899999*****997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0092       5.7       6      28 ..      29      51 ..      24      52 .. 0.85
   2 !   12.0   0.0   0.00032       0.2       6      28 ..      71      93 ..      70      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0092
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la +++++g++deA+ ++ r ik
  MMETSP0890-20130614|1159_1 29 LAGLLENQGKYDEAKPLYVRAIK 51
                666788899*******9999886 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00032
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la +++k+g++deA+ ++er ik
  MMETSP0890-20130614|1159_1 71 LAGLLEKQGKYDEAMPLYERAIK 93
                666788899***********998 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0061       3.8       4      28 ..      26      50 ..      23      59 .. 0.86
   2 !   10.3   0.0   0.00078      0.48       6      28 ..      70      92 ..      65      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0061
   PF12688.2  4 lferagarDstGeeakAvplYrrAl 28
                l + ag  +  G+ ++A plY rA+
  MMETSP0890-20130614|1159_1 26 LNNLAGLLENQGKYDEAKPLYVRAI 50
                55779999**************997 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00078
   PF12688.2  6 eragarDstGeeakAvplYrrAl 28
                + ag  +  G+ ++A+plY+rA+
  MMETSP0890-20130614|1159_1 70 NLAGLLEKQGKYDEAMPLYERAI 92
                679999***************97 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.016       9.9      25      37 ..       5      17 ..       4      18 .. 0.87
   2 ?   -0.5   0.0       1.1   6.9e+02      15      30 ..      37      52 ..      33      59 .. 0.75
   3 !    9.6   0.0   0.00076      0.47      14      35 ..      78      99 .]      66      99 .] 0.90

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.016
   PF10516.4 25 rkaLeLreqllpp 37
                ++aL++re+ l p
  MMETSP0890-20130614|1159_1  5 ERALKIREEMLGP 17
                69*******9987 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.1
   PF10516.4 15 EnFpqAveDlrkaLeL 30
                +++++A   + +a+++
  MMETSP0890-20130614|1159_1 37 GKYDEAKPLYVRAIKI 52
                6899997777888777 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00076
   PF10516.4 14 nEnFpqAveDlrkaLeLreqll 35
                ++++++A   +++a+++re++l
  MMETSP0890-20130614|1159_1 78 QGKYDEAMPLYERAIKIREKTL 99
                689****************975 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.021        13       2      22 ..      24      44 ..      23      48 .. 0.85
   2 !    8.1   0.0    0.0061       3.8       3      26 .]      67      90 ..      65      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.021
                HHH---HHHHHH-------HH CS
   PF07721.9  2 rallaLArallalGdldeAra 22
                + l +LA +l  +G +deA  
  MMETSP0890-20130614|1159_1 24 QSLNNLAGLLENQGKYDEAKP 44
                56789**************65 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0061
                HH---HHHHHH-------HHHHHT CS
   PF07721.9  3 allaLArallalGdldeAraller 26
                +l +LA +l  +G +deA  l er
  MMETSP0890-20130614|1159_1 67 TLNNLAGLLEKQGKYDEAMPLYER 90
                56799*************999887 PP

>> PF04877.7  HrpZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00068      0.42      31      61 ..      16      46 ..       3      94 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00068
   PF04877.7 31 stsskelkdvidqLaqaLtknGqldessplG 61
                + s++++ +++++La+ L ++G+ de +pl 
  MMETSP0890-20130614|1159_1 16 GPSQQNVAQSLNNLAGLLENQGKYDEAKPLY 46
                4678888899999999999999999999986 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.032        20      13      22 ..      35      44 ..      33      47 .. 0.84
   2 ?    7.4   0.0    0.0055       3.4      14      33 ..      78      95 ..      77      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.032
                HTT-HHHHHH CS
   PF07720.7 13 nkkkyqeAre 22
                n++ky+eA  
  MMETSP0890-20130614|1159_1 35 NQGKYDEAKP 44
                89******55 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0055
                TT-HHHHHHH..HHHHHHH- CS
   PF07720.7 14 kkkyqeArelfsYallaild 33
                ++ky+eA  l  Y+ + +++
  MMETSP0890-20130614|1159_1 78 QGKYDEAMPL--YERAIKIR 95
                8*********..87776666 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.24   1.5e+02      16      27 ..       4      15 ..       3      16 .. 0.87
   2 ?    1.4   0.0      0.57   3.5e+02       4      20 ..      27      43 ..      25      54 .. 0.81
   3 ?    6.8   0.0     0.011       6.7       2      23 ..      67      88 ..      66      95 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.24
  PF01535.15 16 leeAlelfkeMk 27
                +e Al++ +eM+
  MMETSP0890-20130614|1159_1  4 CERALKIREEML 15
                689********6 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.57
  PF01535.15  4 nslIsgyckaGkleeAl 20
                n l   +   Gk++eA 
  MMETSP0890-20130614|1159_1 27 NNLAGLLENQGKYDEAK 43
                66666777889****95 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.011
  PF01535.15  2 tynslIsgyckaGkleeAlelf 23
                t n l   + k Gk++eA+ l+
  MMETSP0890-20130614|1159_1 67 TLNNLAGLLEKQGKYDEAMPLY 88
                789999999*********9555 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.017        11      73      95 ..      26      48 ..      12      55 .. 0.86
   2 ?    5.9   0.0     0.013       7.8      73      96 ..      68      91 ..      60      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.017
                TTHHHHHHHT-SSHHHHHHHH-- CS
  PF00637.15 73 lekvaklcekadlyeeavilykk 95
                l+ +a l+e++++y+ea+ ly++
  MMETSP0890-20130614|1159_1 26 LNNLAGLLENQGKYDEAKPLYVR 48
                678999***************97 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.013
                TTHHHHHHHT-SSHHHHHHHH--- CS
  PF00637.15 73 lekvaklcekadlyeeavilykki 96
                l+ +a l+ek+++y+ea+ ly++ 
  MMETSP0890-20130614|1159_1 68 LNNLAGLLEKQGKYDEAMPLYERA 91
                5778999*************9974 PP

>> PF07678.9  A-macroglobulin complement component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00033      0.21      35     101 ..       6      78 ..       2      97 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00033
   PF07678.9  35 kvlsqarkfifidekkiakslewLlkkqkedGsFeeegpllnremkggv......ekevtLTAfvliaLleak 101
                 + l+  +++ + +++++a+sl+ L    +++G ++e++pl+ r++k         + +v+ T   l+ Lle +
  MMETSP0890-20130614|1159_1   6 RALKIREEMLGPSQQNVAQSLNNLAGLLENQGKYDEAKPLYVRAIKIMEkghgpnHPDVATTLNNLAGLLEKQ 78 
                 6667777888899****************************99977544344666777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 324.99
//
Query:       MMETSP0890-20130614|1158_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-28   96.3   0.5    5.1e-27   93.8   0.1    2.0  2  PF00134.18 Cyclin, N-terminal domain
    6.1e-07   29.2   0.1    1.4e-06   28.0   0.0    1.7  2  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   7.5e-31   5.1e-27       4     126 ..       5     129 ..       3     130 .. 0.95
   2 ?    0.3   0.0     0.063   4.3e+02      74     104 ..     177     208 ..     166     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 7.5e-31
                 HHHHHHHCCTT-SSTTTC.GCS.S--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18   4 tnllekeekkkppskyld.qqe.elnpemrsilidwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 + l+e ee ++p++ y+  +q   +++  r  +  w  +++e f++s+etl +a nyldR+ls++ +   k+ql  v++++lA+Kvee +p + +d+v ++dg++++ e+  mE+++L tLn+ l
  MMETSP0890-20130614|1158_1   5 NKLSEVEELYQPNPTYIGlIQVdGMTEGWRHKITVWFDQLAESFNMSTETLSIATNYLDRYLSVETCDSLKFQLASVASIFLASKVEEATPFKTADFVTLSDGVFSAAELRFMELELLCTLNWHL 129
                 5688999999*******9644469999************************************************************************************************98 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.063
                 TT---HHHHHHHCCC-SS---CHHHHCHT.TS CS
  PF00134.18  74 qlvgvtcLllAaKveeirppeledlvyit.dg 104
                  +++v++++ A K  +++   + d+++i  ++
  MMETSP0890-20130614|1158_1 177 SMIAVASIIYALKQLDVESHVVTDWMVIVnKC 208
                 68999999999999999999999999888533 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   3.9e+03      25      25 ..      76      76 ..      50     103 .. 0.59
   2 !   28.0   0.0   2.1e-10   1.4e-06       1      62 [.     132     200 ..     132     229 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.57
                H CS
  PF02984.14 25 k 25
                 
  MMETSP0890-20130614|1158_1 76 F 76
                1 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 2.1e-10
                 --HHHHHHH...HHHHSSS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH......... CS
  PF02984.14   1 ptplsFlrr...fskaadadsevrtlakyllelslldykflsyppSliAaaavllarktlk.kke...s 62 
                 pt ++F++    f k +  +  + t a  ++e + l+ +f++yppS+iA a+++ a+k l+ +++    
  MMETSP0890-20130614|1158_1 132 PTFHTFINLllvFFKNNVDTDLIGTRATRIAETTRLHAEFINYPPSMIAVASIIYALKQLDvESHvvtD 200
                 8899999995544554444566999999*******************************9954444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.69
# Mc/sec: 1010.64
//
Query:       MMETSP0890-20130614|1161_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-60  203.2   0.0    3.8e-60  202.9   0.0    1.0  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
      0.089   12.5   0.2       0.88    9.3   0.0    2.4  2  PF08130.6  Type A lantibiotic family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.9   0.0   5.5e-64   3.8e-60       2     282 ..      66     330 ..      65     331 .. 0.95

  Alignments for each domain:
  == domain 1    score: 202.9 bits;  conditional E-value: 5.5e-64
  PF00248.16   2 lglGtwslgndeisedealellraaleaGinlfDtAeyYgkgqseellgealkk....srkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslp......sieevlealeelkkeGkirhiGvSnfsveilekakkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeidell 282
                 +glGtw     ++++ +++++++ a+++G++++D+A++Y    +e+++ge +k+      +kre+++i++K+     +++++ ++++ +++ek L+ lg+dylDl+l+h+p +          iee+++a+e l+ +Gk r+iGvSnfs++ l+++ + + + ++v+qve ++l  l + +lle + e+++ ++aysplg+         +++ ++++++ + + a+++++e+a + + s+aq+ lr+a+  ++++svip+++s++++ en++ +++el +e ++++++++
  MMETSP0890-20130614|1161_1  66 VGLGTW-----KSKDGTVKAAVKNAVKNGYRHIDCAHIY---GNEHEVGEGIKEliaeGVVKREDLWITSKL-----WNDYHAADDVPKACEKTLQDLGLDYLDLYLIHWPVTPIEaetlkpTIEETWKAMEALVTAGKTRSIGVSNFSAKKLSALMQYANISPAVNQVELHPL--LRQDKLLEKATELNIHLTAYSPLGS---------PDSAKQFGHAGESLMAHPKVNEIATKVNKSPAQVLLRWAV--ERGTSVIPKSTSEKRIIENFDLFDWELGSENMKQLNSIE 330
                 89****.....8999************************...999999999999999899************.....**********************************999999*********************************************************..************************9.........444555556666789*************************..9***********************************986 PP

>> PF08130.6  Type A lantibiotic family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13     9e+02      23      45 ..     167     189 ..     165     201 .. 0.71
   2 ?    9.3   0.0   0.00013      0.88       4      26 ..     310     332 ..     308     334 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.13
   PF08130.6  23 LeaqslGPaikasvkvCqktlka 45 
                 +ea +l P i  + k  +  + a
  MMETSP0890-20130614|1161_1 167 IEAETLKPTIEETWKAMEALVTA 189
                 69999*****9999887754444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00013
   PF08130.6   4 kkdLFDLeikketsentdeLeaq 26 
                 + dLFD e+  e+++  + +e+q
  MMETSP0890-20130614|1161_1 310 NFDLFDWELGSENMKQLNSIEPQ 332
                 569*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.64
# Mc/sec: 1340.46
//
Query:       MMETSP0890-20130614|1164_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-17   62.6   0.0    2.7e-17   62.6   0.0    1.0  1  PF00069.20 Protein kinase domain
    7.7e-15   54.5   0.0    7.7e-15   54.5   0.0    1.0  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.019   13.8   0.0      0.021   13.7   0.0    1.0  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0     6e-21   2.7e-17      99     154 ..       2      56 ..       1      60 [] 0.90

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 6e-21
                 HHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS- CS
  PF00069.20  99 eikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakklekssek 154
                 +++++ +qi+ g++yl+s+g+ HrDLK++N+Ll +++++ki+DFGla++ e+ +++
  MMETSP0890-20130614|1164_1   2 QMRTWSRQIAIGMRYLYSRGVEHRDLKTSNVLLGHNDSCKISDFGLARC-EELKSR 56 
                 68999******************************************98.655555 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.7e-18   7.7e-15     105     156 ..       3      54 ..       1      60 [] 0.89

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.7e-18
                 HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTT CS
  PF07714.12 105 llkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekd 156
                 +  ++ qia Gm+yL s+ + HrdL + NvLl +++ +kisDfGLar  e +
  MMETSP0890-20130614|1164_1   3 MRTWSRQIAIGMRYLYSRGVEHRDLKTSNVLLGHNDSCKISDFGLARCEELK 54 
                 567899****************************************977544 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.6e-06     0.021     124     166 ..       7      46 ..       2      58 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.6e-06
   PF06293.9 124 leavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                  ++++  ++ + ++gv+H+dl   n+ll  ++    + + D+ 
  MMETSP0890-20130614|1164_1   7 SRQIAIGMRYLYSRGVEHRDLKTSNVLLGHND---SCKISDFG 46 
                 5799999999******************9997...66666764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 228.22
//
Query:       MMETSP0890-20130614|1163_1  [L=1057]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-34  119.1   0.0    2.2e-34  118.4   0.0    1.4  1  PF00063.16 Myosin head (motor domain)
      7e-17   61.4   0.6    1.5e-16   60.4   0.4    1.5  1  PF00169.24 PH domain
    7.6e-11   41.5   8.0    1.9e-10   40.2   5.5    1.8  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   4.8e-38   2.2e-34     410     688 ..       4     273 ..       1     274 [. 0.86

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 4.8e-38
                 HHHTTSCGCCS--.SCCHHHHHHHHS...S----HHHHHHHHTSTTS....-HHHHHHHHHHHHTTTSTTEE-TTTSTTT-SSEEEEEESSCEEEEE-...TTHHHHHH--S-HHHHHHHH.T-SSHHHHHHCHSHCH...................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CSTT--SSHHHHHHHHHHHTT--GGGEEB---EEEE CS
  PF00063.16 410 yeregieweeidygldnqavidLiek...kpaGilsllDeecrlpka....tdesflekllktfeskhlkfskkrlskaraessftvkHyAgeVeYsa...egflekNkdplsedlvellk.ssssslvaelfkeeelaedfeeeeaaaesaklgsakgksgkkkkfetvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvklselvgdekkacekilkeleldkeeyrvGktkvFf 688
                  e+egi+++ei+   d++a+i+L+     + +Gi+ +lD ++         +d+ fl+k+++t+ + h+ + +++   + ++++f+++HyA +V Y++   ++++e N d++ e+l e+++ ++ + + ++ +    +            s+  + +k++  kkk+ ++v++ f +s+++l++tL++t   f+rC+kP  +++++++d+k + +ql++lG+l+   + + G p r+a+d++++    l +++++ l    +++++ +++ l + e+ +e yr+G t+vFf
  MMETSP0890-20130614|1163_1   4 FEEEGIDTPEITAPPDSSATIELLAGrsaSAPGIIRILDAQAIAGGKssadSDAAFLAKVHSTH-GRHASLARTHP--KDKRTQFAIHHYADAVAYTVigvDSWTEANVDTVPEGLAEIIQiHAGHGFARDALCAISI------------STPDSASKSATSKKKRQTSVAAGFASSMTKLRETLSATDSAFIRCVKPTPKMIPGQVDEKSCCAQLRALGLLAACEVLKVGLPTRVAYDDIFK---KLPPSAITIL--QGEEKETIVAVALAAFEVPTEAYRLGRTRVFF 273
                 589*********************98777889*******9998764446679************.99999888864..789***************9633378*****************944556999999999776............3333344444445555699************************************************************************99...8999998765..3445555556667777***************8 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.4   3.2e-20   1.5e-16       3     101 ..     731     829 ..     729     831 .. 0.88

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 3.2e-20
                 BEEEEEEEETSSSCEEEEEEEEETTEEEEESSSST......TCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHH CS
  PF00169.24   3 keGyllkksellktwkkryfvLtsnyLlyfksskk......ksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalkn 101
                 +eGyl+k++++ ++wk+r+fvL ++yL+yf++++        ++  + ++  l  ++ k  +s       +++n+f++++ +v s++l a++e e+ +W++ ++ 
  MMETSP0890-20130614|1163_1 731 REGYLMKQGKWTSRWKPRWFVLEDSYLEYFEKKQHaygrggDKKQGKSKAEKLMRLEAKSITSF-----TDTENCFCVSTGSV-SWFLVAPNEREMAEWISHINA 829
                 79*******************************99***99966666666666677777777776.....5889**********.*******************86 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   5.5   4.2e-14   1.9e-10       2      31 .]     620     649 ..     619     649 .. 0.93

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 4.2e-14
                 --SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   2 ppgWeersddd.dGrvYYyNheTgetqWekP 31 
                 ppgWe+++d d +G +YY+N+ +getqWe+P
  MMETSP0890-20130614|1163_1 620 PPGWEAHWD-DnYGLYYYFNTVSGETQWEPP 649
                 9*******6.55******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.54u 0.42s 00:00:01.96 Elapsed: 00:00:01.10
# Mc/sec: 2302.68
//
Query:       MMETSP0890-20130614|1166_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-09   34.9   0.0      2e-08   34.0   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    9.1e-08   31.5   0.0    2.1e-07   30.3   0.0    1.7  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0014   18.2   0.0     0.0029   17.3   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0056   16.6   0.3      0.016   15.1   0.0    2.0  2  PF00615.14 Regulator of G protein signaling domain
  ------ inclusion threshold ------
        9.4    5.9   8.8        6.2    6.5   4.8    1.7  2  PF11845.3  Protein of unknown function (DUF3365)


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   7.2e-12     2e-08       2      69 .]     128     198 ..     127     198 .. 0.91

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.2e-12
   PF14259.1   2 yvrglppsvteedlreffspygk..vegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 +v+ l++s+++  l++f+ + g     +vr+  +k+ g++ g+Afve+es e+  ++++ ++  l+gr i+
  MMETSP0890-20130614|1166_1 128 FVGQLNYSTSANRLKQFLIDRGVqgHLKVRLRTDKKtGKSLGQAFVECESTEALHACVALHHATLDGRRIN 198
                 799****************965422249*******99*******************************996 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   7.9e-11   2.1e-07       2      69 ..     128     197 ..     127     198 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 7.9e-11
                 EEESSTTTSSHHHHHHHHCTCTCE..EEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   2 fVgnLppdvteeeLkelFskfGpi..esiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 fVg L+++++ + Lk+++ + G     +++l +d +tg+s g afVe es e+  ++++ l++ +l+gr++
  MMETSP0890-20130614|1166_1 128 FVGQLNYSTSANRLKQFLIDRGVQghLKVRLRTDkKTGKSLGQAFVECESTEALHACVA-LHHATLDGRRI 197
                 9*****************99665544799999***************************.*********98 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06    0.0029      21      56 .]     168     202 ..     155     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1e-06
   PF13893.1  21 ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  gqAfve +++ea   ++ +l+ + l+g++++ve s
  MMETSP0890-20130614|1166_1 168 LGQAFVECESTEALHACV-ALHHATLDGRRINVEKS 202
                 49****************.5*************965 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         2   5.5e+03      73      73 ..     105     105 ..      71     132 .. 0.52
   2 !   15.1   0.0   5.9e-06     0.016      40      82 ..     214     261 ..     158     295 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2
                 H CS
  PF00615.14  73 r 73 
                 r
  MMETSP0890-20130614|1166_1 105 R 105
                 2 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 5.9e-06
                 S.....--HHHHHHHHHHHHHHHTSSSSTTSSTS-HHHHHHHHHHTCS CS
  PF00615.14  40 a.....keqeelskkakeIynkylapsspkelnidkklreeleknlek 82 
                       ++q+ +++++++I+n+yla++  k+ +id+ +r+ le++  k
  MMETSP0890-20130614|1166_1 214 VsqlrsDQQQHVQQTVERIINEYLADGRLKSNEIDQGVRTLLERRSGK 261
                 04444469999*****************************99988766 PP

>> PF11845.3  Protein of unknown function (DUF3365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.8    0.0023       6.2      23     104 ..      11      98 ..       1     123 [. 0.66
   2 ?   -2.6   0.0       1.4   3.8e+03     104     119 ..     226     241 ..     204     297 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0023
   PF11845.3  23 aqaedeakkk.aralikql...estreyvaeaggpivapkegt.....gealallvpayaareigeelskktggytfrqtslkprnpankp 104
                 + ++++ak++  +++++++     + + +  ++g+++a++          +++   p ++  ei ++ + k+ g t++qts k +n++n++
  MMETSP0890-20130614|1166_1  11 RRLARQAKRQeEESVASNIqqdSVIARGAVGTMGVLNAKE--RrrlarAAKRKTATPLVVNEEIIKKKKAKKAG-TVQQTSAKTINEKNEA 98 
                 3333333333355555555111333333334444444443..13477778888888999999998888887744.**************98 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.4
   PF11845.3 104 pdafEkealekfengp 119
                  ++ E+ + e++++g 
  MMETSP0890-20130614|1166_1 226 QQTVERIINEYLADGR 241
                 2223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1433  (0.104813); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.78
# Mc/sec: 1149.02
//
Query:       MMETSP0890-20130614|1167_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-34  119.4   0.1    2.2e-34  118.5   0.0    1.4  1  PF01207.12 Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
      0.027   13.8   0.0       0.06   12.7   0.0    1.5  1  PF11314.3  Protein of unknown function (DUF3117)


Domain annotation for each model (and alignments):
>> PF01207.12  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   3.3e-38   2.2e-34       2     224 ..      20     272 ..      19     350 .. 0.78

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 3.3e-38
  PF01207.12   2 lAPmagvtdlpfRellrevgat.....dlvvtemvtakaivreekvtirmlseleee...........tplalQllgsdpallaeaAklvadlgadeIDlNvGCPakkvtkggaGaaLlrkpdlvaqivkavvkaveipvtvkirigid...dskenalelarrveaaGaqaltvHgR....traqnyegtadwea.Ikevkqavs....ipviaNGdikdaedaqailae...tG.adgvMigrgalgnPwlfa 224
                 lAPm++    ++R l  e+ga+     +lv   +v+++  ++++  t + + ++ ++             l++Ql++sdp+++ +aA  va  +a ++DlN+GCP+ ++   g+GaaLl +p+ +a+iv+a+++ ++  vtvkir   +    + +++++l+r+++ aGa+a+t+H+R     +++    +a +++ +++++ +++      +++NGd ++  d+ ++ +    +G adgv+++r al n ++f 
  MMETSP0890-20130614|1167_1  20 LAPMVRANSIALRVLALEYGANivfseELVAKKFVQTERRLNPTLGTVDYVHSDGKSialridpkkegGRLVVQLGASDPETARDAALHVAR-DAVGVDLNMGCPKRFSLTDGMGAALLSQPERAASIVRAMAQVCR-AVTVKIRFVPNddeTNLDRTIQLCRALQVAGAKAITLHARfpgeLPEKTGPRRATLRRlLARLRTEIAfrheCALLVNGDYYTHADILEACSGgwmSGsADGVLLARPALLNASIFM 272
                 8*********************66666666666777777777766666666666666999999999999*********************99.*******************************************9.9*******998333345679********************776633333333677766258899988888889*********99888776654111333899999999988877775 PP

>> PF11314.3  Protein of unknown function (DUF3117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.7e-06      0.06      13      39 ..      71      98 ..      69     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.7e-06
   PF11314.3 13 tkEgRgivmRv.PleGGGRLVvelnkeE 39
                  +g++i +R+ P   GGRLVv+l + +
  MMETSP0890-20130614|1167_1 71 HSDGKSIALRIdPKKEGGRLVVQLGASD 98
                5789*******99**********97754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.66
# Mc/sec: 1528.59
//
Query:       MMETSP0890-20130614|1165_1  [L=927]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-48  162.7   0.0    4.4e-43  147.0   0.0    2.7  2  PF07724.9  AAA domain (Cdc48 subfamily)
    1.7e-24   86.4   0.0    4.1e-14   52.7   0.0    2.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    6.9e-23   80.2   0.0    5.5e-22   77.3   0.0    2.7  1  PF10431.4  C-terminal, D2-small domain, of ClpB protein
    1.7e-15   56.8   1.2    4.3e-09   36.0   0.0    4.5  3  PF07728.9  AAA domain (dynein-related subfamily)
    6.2e-10   38.6   0.0    1.2e-05   24.7   0.0    2.7  2  PF00158.21 Sigma-54 interaction domain
    1.1e-09   38.7  10.4    7.3e-06   26.3   0.2    4.5  3  PF13191.1  AAA ATPase domain
    4.3e-09   36.4   0.1     0.0072   16.3   0.0    4.1  3  PF13401.1  AAA domain
    5.6e-09   35.6   0.2    1.9e-07   30.7   0.0    2.9  2  PF02861.15 Clp amino terminal domain
    3.1e-07   31.0   1.1      0.048   14.3   0.0    3.4  2  PF13207.1  AAA domain
    3.4e-07   29.7   0.0      0.013   14.8   0.0    2.9  2  PF01695.12 IstB-like ATP binding protein
      1e-06   28.5   0.0      0.024   14.4   0.0    2.8  2  PF13173.1  AAA domain
    1.8e-06   28.1   0.0       0.12   12.5   0.0    3.1  2  PF13238.1  AAA domain
    6.6e-06   25.2   0.4       0.04   12.9   0.0    3.2  3  PF06414.7  Zeta toxin
    8.8e-06   24.9   0.1        0.1   11.6   0.0    3.3  3  PF01078.16 Magnesium chelatase, subunit ChlI
    1.4e-05   24.6   0.1      0.032   13.7   0.0    3.4  3  PF05729.7  NACHT domain
    5.2e-05   22.6   0.4        0.2   10.8   0.0    3.8  3  PF13481.1  AAA domain
    8.2e-05   21.6   3.6       0.27   10.1   0.0    3.7  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0002   20.8   1.6      0.082   12.5   0.1    3.6  2  PF13245.1  Part of AAA domain
    0.00039   20.4   0.0       0.73    9.9   0.0    2.6  2  PF00910.17 RNA helicase
    0.00092   18.8   0.0        9.5    5.7   0.0    3.8  3  PF01637.13 Archaeal ATPase
     0.0013   18.6   0.7        1.7    8.4   0.0    4.1  4  PF13521.1  AAA domain
     0.0027   17.4   0.5        2.8    7.6   0.0    3.6  2  PF13671.1  AAA domain
      0.003   16.2   0.1       0.23    9.9   0.0    2.7  2  PF06068.8  TIP49 C-terminus
     0.0047   16.1   7.8        1.4    8.0   0.1    3.8  2  PF12846.2  AAA-like domain
     0.0086   15.8   0.0      0.026   14.3   0.0    1.7  1  PF06309.6  Torsin
     0.0099   15.3   0.0        2.5    7.5   0.0    2.5  2  PF13479.1  AAA domain
  ------ inclusion threshold ------
      0.018   14.3   0.0        2.4    7.4   0.0    2.7  2  PF00270.24 DEAD/DEAH box helicase
      0.023   13.7   0.0          7    5.7   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
      0.027   13.5   0.0        1.2    8.1   0.0    2.6  2  PF02562.11 PhoH-like protein
      0.035   13.6   0.3        9.6    5.7   0.0    2.8  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.082   11.6   0.0        4.2    6.0   0.0    2.5  2  PF00931.17 NB-ARC domain
      0.089   12.2   0.0         32    4.0   0.0    3.3  3  PF07726.6  ATPase family associated with various cellular activities (AAA)
       0.47    8.1   1.5       0.77    7.4   1.0    1.3  1  PF01496.14 V-type ATPase 116kDa subunit family
        5.4    6.4  12.6        0.8    9.1   4.4    2.3  2  PF04156.9  IncA protein
        8.5    6.5   7.0        1.9    8.6   0.4    3.2  2  PF11488.3  Transcriptional regulatory protein LGE1


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00017     0.066       5      83 ..     213     298 ..     209     322 .. 0.81
   2 !  147.0   0.0   1.1e-45   4.4e-43       1     171 []     625     803 ..     625     803 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00017
                 -EEEE-------HHHHHHHHHHTT-..........--EEEEGGG-------THHHHHHHHHTTT-HHHHT--.-EEEETGGG---- CS
   PF07724.9   5 silllgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihpk 83 
                 + +l+g  gvGkt +a+ la+   +       + +++i +d+ +l+ + + + + ++ + a    v+ ++g  i+++DEi  +   
  MMETSP0890-20130614|1165_1 213 NPILVGDPGVGKTAIAEGLAQRVAAgdvpeaLRGRSVISLDMGALIAGAAYRGSFEERLKAVVDEVKEANGNiILFIDEIHTVVGA 298
                 55788999*************99999999998899************999999998888777777766666668899***887764 PP

  == domain 2    score: 147.0 bits;  conditional E-value: 1.1e-45
                 -----EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--............-EEEETGGG----------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-S............TTTTSGGG--HHHHHH----TTT-----EE CS
   PF07724.9   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk............eeeeekkkeevedllkkglipEllgRlpei 171
                 rp++ ++++gptgvGkt+lak lae  f ++ ++lir+d+se+ e    +  v+rlig+ppgyvg+e gG            +vllDEi+K+ +            V++++Lq+l++g+ltd qg++v+++++++++t+++gs+ i d+  +              ++ +++k +v d+++ +++pE+l+Rl+ei
  MMETSP0890-20130614|1165_1 625 RPVAAFMMAGPTGVGKTLLAKVLAEEVF-DDPNALIRIDMSEYGE----KFAVTRLIGSPPGYVGYESGGqlteavrrkpyaVVLLDEIEKADE-----------SVFDIFLQLLDDGRLTDGQGETVNFRDCIILFTSNIGSQYILDAVDDFsradrvgddadtFATLSEVKRKVIDSMRTKFRPEFLNRLDEI 803
                 68899***********************.****************....*********************************************...........*******************************************6665599******9998778889999*******************86 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0     1e-16   4.1e-14       2     127 ..     215     349 ..     214     353 .. 0.83
   2 !   30.7   0.0   6.6e-10   2.6e-07       2     125 ..     631     765 ..     630     768 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 1e-16
                 EEE-------HHHHHHHHHHC..........THEEEEEECCSSS..SST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS.....GGGS-HHHHHTTSCCE CS
  PF00004.24   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr.....pdkldpallrgRfdrk 127
                 +l+G pG+GKT++a+ +a+ +          g++++++++  l+    y g  e++++++++e+ke ++ +ilfiDEi+ ++++   ++s+ ++++ n L ++l + +       ++gat+      + + d+al  +Rf+r+
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVaagdvpealrGRSVISLDMGALIagAAYRGSFEERLKAVVDEVKEANGNIILFIDEIHTVVGAG--ATSSGAMDASNLLKPALARGEL-----RCVGATTLaeykqYIESDKALE-RRFQRV 349
                 79******************76666666666799**********5445******************9977**************9..899999999****999999988.....5677776655422445566666.688776 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 6.6e-10
                 EEE-------HHHHHHHHHHC...THEEEEEECCSSSSS............T-H.HHHHHHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT........S.TEEEEEE-SS.GGGS-HHHHH.TTSC CS
  PF00004.24   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvg.esekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk........eskvivigatnr.pdkldpallr.gRfd 125
                 ++ Gp G+GKTllak +a+e+      +++i++se  +k            yvg es  ++ e +++   k  p  ++++DEi++  +s           v++ +l+ ld+ +           +++i++ ++n   + + +a+   +R+d
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKTLLAKVLAEEVfddPNALIRIDMSEYGEKfavtrligsppgYVGyESGGQLTEAVRR---K--PyAVVLLDEIEKADES-----------VFDIFLQLLDDGRLTdgqgetvnFRDCIILFTSNIgSQYILDAVDDfSRAD 765
                 689*****************95543789*********99************8874677778887765...2..558********99544...........488888888888777777777775557777777775555555555555555 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   1.4e-24   5.5e-22       1      79 [.     809     888 ..     809     890 .. 0.97

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 1.4e-24
                 --HHHHHHHHHHHHHHHHHHHHT.TT-EEEE-HHHHHHHHC----TT---TTHHHHHHHHTHHHHHHHHH--------EE CS
   PF10431.4   1 LskeelkkIvdlqlkklekrlae.rgveleltdealdalaekgydpeyGARpLrriiereiedplaelilsgelkegdtv 79 
                 L +++l++Iv l+++k+ +r+ + ++v++el+d+a+d+l+  gydp yGARpL+r+++r ie pla ++l+g++++gdt+
  MMETSP0890-20130614|1165_1 809 LRQSTLRQIVVLEVNKIVNRMLDvHNVRVELSDAAVDHLVTVGYDPIYGARPLKRAVQRGIESPLASAVLAGKFEPGDTA 888
                 7899*****************999****************************************************9985 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-05     0.016       3      75 ..     215     293 ..     213     346 .. 0.75
   2 ?    0.8   0.0      0.84   3.3e+02      41      75 ..     366     411 ..     364     445 .. 0.84
   3 !   36.0   0.0   1.1e-11   4.3e-09       2     123 ..     630     749 ..     629     760 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-05
                 EEE------HHHHHHHGGGGB..S--EEEEE--TT--HH..HH---B--.........--------...G-SEEEEESGG CS
   PF07728.9   3 lLvGppGtgKselaerlaeal..nreveyvqltrdttee..dlkgrreiangttslvdsplvraar...egeilvlDEve 75 
                 +LvG+pG+gK+ +ae la+++  ++  e   +++ ++ +   l+ +  +  g  + + +++v++++      il++DE++
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVaaGDVPEALRGRSVISLDmgALIAGAAY-RGSFEERLKAVVDEVKeanGNIILFIDEIH 293
                 8******************998766666666665444332245555555.555555555555566644233356777776 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.84
                 H---B--.........--------............G-SEEEEESGG CS
   PF07728.9  41 lkgrreiangttslvdsplvraar............egeilvlDEve 75 
                 lk+r+e+   + +  ds+lv aar            +++i v+DE  
  MMETSP0890-20130614|1165_1 366 LKQRYEV-HHGVRILDSALVAAARltdryvggrflpDKAIDVIDEAA 411
                 8999999.77778889*********9999999999999999999864 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 1.1e-11
                 EEEE------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--............--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreia...ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanp 123
                 +++ Gp+G+gK+ la+ lae +  ++   + +  +   e++   r i    +     + + l++a+r    ++++lDE+e+a+ +v++++l+ll++ rl+  +g++++   +d        +++t+n 
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEEVfDDPNALIRIDMSEYGEKFAVTRLIGsppGYVGYESGGQLTEAVRrkPYAVVLLDEIEKADESVFDIFLQLLDDGRLT--DGQGETVNFRD------CIILFTSNI 749
                 6899****************99966666666666666666666666666745555566789******7666999**************************..77777655543......777777775 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00064      0.25       2     105 ..     193     295 ..     192     300 .. 0.70
   2 !   24.7   0.0     3e-08   1.2e-05      23     124 ..     628     730 ..     610     756 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00064
                 -.-SHHHHHHHHHHHHHTTS-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH--.----------S-----TTTG---.-EEEET---- CS
  PF00158.21   2 igesealkelleqikkvaktdltvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFG.hekGaFtGAekekkGlfekadgG.tLfLDeigel 105
                 ig++++++++++ +++   t+ + +++G+ G+GK+ +A+ + ++ +  + p      + i+ ++  + + G   +G+F    k+    +++a+g  +Lf+Dei+++
  MMETSP0890-20130614|1165_1 193 IGRDDEIRRAIQVLSRR--TKNNPILVGDPGVGKTAIAEGLAQRVAAGDVPEALRGRSVISLDMG-ALIAGaAYRGSFEERLKAVVDEVKEANGNiILFIDEIHTV 295
                 66777777777777664..45566789**************997776665544444444443332.2233315689999999999999999999835899**9975 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 3e-08
                 S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH------------S---..--TTTG----EEEET-----HHHHHHHHHHHH---BE- CS
  PF00158.21  23 ltvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekk..GlfekadgGtLfLDeigelplelQekLlrvlqegever 124
                 +  ++ G +G+GK+llA+++ e+   + + +++++++++ e+   ++L G   G + G e+ ++   ++++    +++LDei++ + ++   +l++l++g+++ 
  MMETSP0890-20130614|1165_1 628 AAFMMAGPTGVGKTLLAKVLAEEVFDDPNALIRIDMSEYGEKFAVTRLIGSPPG-YVGYESGGQltEAVRRKPYAVVLLDEIEKADESVFDIFLQLLDDGRLTD 730
                 56799*********************************************9998.78877755544667777789************************99875 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2   1.9e-08   7.3e-06       2      98 ..     192     290 ..     191     325 .. 0.56
   2 ?   -1.5   0.2       6.5   2.5e+03      75     103 ..     520     548 ..     425     597 .. 0.61
   3 !   12.1   0.2   0.00044      0.17       9      51 ..     606     655 ..     598     732 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.9e-08
   PF13191.1   2 lvGRereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.....lpysaiiqa......lrellrqlltelaaelggwreall 98 
                 ++GR++e+++  ++l+r +  +p  +++G++G+GK+++++ la++++       ag + ++lr      l ++a+i        ++e l+++ +e++++ g+   ++ 
  MMETSP0890-20130614|1165_1 192 VIGRDDEIRRAIQVLSRRTKNNP--ILVGDPGVGKTAIAEGLAQRVA-------AGDVPEALRGrsvisLDMGALIAGaayrgsFEERLKAVVDEVKEANGNIILFID 290
                 78***************999986..589***********99555544.......444444444322222223333322442222444444444444444333333333 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 6.5
   PF13191.1  75 lrellrqlltelaaelggwreallaalga 103
                 + +l  ++l+e+ ++l+ ++ al++a+++
  MMETSP0890-20130614|1165_1 520 AAKLRYEILPEVFEKLQTAEKALESATTS 548
                 44455555555555555555555555555 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00044
   PF13191.1   9 leaLlaalrrvsegsp.......lllvtGpsGiGKSsLlrelakpiller 51 
                  + +++a+rr+ +g +       ++   Gp G+GK+ L++ la++++++ 
  MMETSP0890-20130614|1165_1 606 CALVADAVRRSKAGLGdptrpvaAFMMAGPTGVGKTLLAKVLAEEVFDDP 655
                 566778888877766667788988999*************9877777664 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00011     0.042       7     100 ..     214     302 ..     208     325 .. 0.79
   2 ?    0.3   0.0       1.6   6.3e+02      36     107 ..     340     428 ..     324     442 .. 0.64
   3 !   16.3   0.0   1.8e-05    0.0072      10     113 ..     633     725 ..     628     738 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 0.00011
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt.rlliiDEaqrL......s 100
                  +++G +GvGKT  ++ la+            rv+  ++p+    +++ +   +al  +a  r++ ee l+a+ + ++++    +l iDE++ +      s
  MMETSP0890-20130614|1165_1 214 PILVGDPGVGKTAIAEGLAQ------------RVAAGDVPEALRGRSVISLDMGALIAGAAYRGSFEERLKAVVDEVKEANGnIILFIDEIHTVvgagatS 302
                 589*****************............588889999998888888888888888888888899999999999888888999999999865655441 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.6
   PF13401.1  36 e....karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt..........rlliiDEaqr.L.....s.eealeel 107
                 +    + + v+v+ p+     ++l+ l + +++ +      + l +al  a+r +++           + +iDEa   L     s  +al+ +
  MMETSP0890-20130614|1165_1 340 KalerRFQRVLVDEPSVEATVSILRGLKQRYEVHHGV----RILDSALVAAARLTDRyvggrflpdkAIDVIDEAAAkLnnevtSrPDALDAV 428
                 2344577888888888888888888888888886666....3333555555555555557888888888899999987854433145555555 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.8e-05
   PF13401.1  10 tGesGvGKTtllrrlarqldeeaeaaekarvv.fveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrslldd 113
                  G++GvGKT+l++ la++         +++++ +++ ++ +   ++  ++ + +g+p+       e   +l+ea+rr+   ++++DE++   e++++ +  lldd
  MMETSP0890-20130614|1165_1 633 AGPTGVGKTLLAKVLAEEVFD------DPNALiRIDMSEYG--EKF--AVTRLIGSPPGY--VGYESGGQLTEAVRRKPYAVVLLDEIEKADESVFDIFLQLLDD 725
                 6****************8753......33333366666666..555..566777777777..7777889*********************999999999999996 PP

>> PF02861.15  Clp amino terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.62   2.4e+02      12      45 ..      36      70 ..      25      73 .. 0.73
   2 !   30.7   0.0     5e-10   1.9e-07       1      52 [.     107     156 ..     107     157 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.62
                EE-HHHHHHHHTTS.CTSHHHHHHHHTT--HHHHH CS
  PF02861.15 12 yistEHLLLALlee.ddgiaariLkkaGvdlealr 45
                 +++E LL+ALl + +dg+++r L+ +  + +a++
  MMETSP0890-20130614|1165_1 36 LVESEDLLKALLLQgSDGLLRRSLNLCEPTADAAK 70
                57777789998766258888888888888877766 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 5e-10
                 HHHHHHHTTBSEE-HHHHHHHHTTSCTSHHHHHHHHTT--HHHHHHHHHHHH CS
  PF02861.15   1 AqelAkelgdqyistEHLLLALleeddgiaariLkkaGvdlealreaieklr 52 
                 A el  ++gd yis+E + LAL+e++    ++ + +aG++le+l+ a+eklr
  MMETSP0890-20130614|1165_1 107 AMELGNKAGDTYISVEQFVLALAEDS--SCGPMMSAAGASLEKLKPAVEKLR 156
                 678999***************99977..**********************99 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   0.00012     0.048       3      51 ..     215     279 ..     214     369 .. 0.64
   2 !   13.9   0.0   0.00016     0.063       5      32 ..     633     665 ..     630     802 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 0.00012
                 --B--TT---HHHHHHHHHHS..........TEEEEEGGG..B-........-GGGS-B-----B--SS CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl..........glpvlsldd..ll........reeglkelddgereskd 51 
                 +++G pG+GK+ +a+ La+r           g  v+sld+  l+             +e+ + + +   
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVaagdvpealrGRSVISLDMgaLIagaayrgsF----EERLKAVVDEVK 279
                 57899***************766644444455558888887454344321111....122122222222 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 0.00016
                 B--TT---HHHHHHHHHHS.....TEEEEEGGG CS
   PF13207.1   5 tGppGsGKsTlakeLaerl.....glpvlsldd 32 
                  Gp+G+GK+ lak Lae+       l+ +++++
  MMETSP0890-20130614|1165_1 633 AGPTGVGKTLLAKVLAEEVfddpnALIRIDMSE 665
                 6****************8544432344456555 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.2e-05     0.013      45      72 ..     209     236 ..     195     277 .. 0.80
   2 !   11.5   0.0   0.00033      0.13      49      72 ..     629     652 ..     623     678 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.2e-05
  PF01695.12  45 eqaenlvllGpsGvGKthlAialgveav 72 
                 ++++n +l+G +GvGKt +A +l+++ +
  MMETSP0890-20130614|1165_1 209 RTKNNPILVGDPGVGKTAIAEGLAQRVA 236
                 57899******************99754 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00033
  PF01695.12  49 nlvllGpsGvGKthlAialgveav 72 
                  +++ Gp+GvGKt lA  l+ e  
  MMETSP0890-20130614|1165_1 629 AFMMAGPTGVGKTLLAKVLAEEVF 652
                 57899************9998765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00061      0.24       6      85 ..     215     307 ..     210     371 .. 0.74
   2 !   14.4   0.0   6.1e-05     0.024       6      87 ..     631     726 ..     628     731 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00061
   PF13173.1   6 vitGpRrvGKttllkqlakell........keesilyinlddeel....rkladpe.llelfleklke..kkkylflDEiqevpewedalkslvd 85 
                 ++ G  +vGKt +++ la++          + +s++ +++         r    +e  l++++++ ke  ++ +lf+DEi+ v ++  +  + +d
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVAagdvpealRGRSVISLDMGALIAgaayRG--SFEeRLKAVVDEVKEanGNIILFIDEIHTVVGAGATSSGAMD 307
                 7889999**********9888899999966666666666555322322222..222334555555333448889********9776665555555 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.1e-05
   PF13173.1   6 vitGpRrvGKttllkqlakell.keesilyinlddeelrkladpe............llelfleklke........kkky..lflDEiqevpe.wedalkslvddg 87 
                 ++ Gp +vGKt l+k la+e + +++  + i++ +  + k+a ++                      +        +k y  ++lDEi +++e ++d+  +l+ddg
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKTLLAKVLAEEVFdDPNALIRIDMSEYGE-KFAVTRligsppgyvgyeS---------GgqlteavrRKPYavVLLDEIEKADEsVFDIFLQLLDDG 726
                 678************99999999999999999999444.2222222333223322210.........122223444445556*******99753677777777765 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00031      0.12       2      23 ..     215     238 ..     215     293 .. 0.74
   2 !   12.3   0.0   0.00037      0.14       4      22 ..     633     651 ..     631     773 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00031
   PF13238.1   2 litGtpGvGKtTlakeLaerl..g 23 
                 +++G pGvGKt +a+ La+r   g
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVaaG 238
                 689***************996552 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00037
   PF13238.1   4 tGtpGvGKtTlakeLaerl 22 
                 +G++GvGKt lak Lae+ 
  MMETSP0890-20130614|1165_1 633 AGPTGVGKTLLAKVLAEEV 651
                 7****************94 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0022      0.87      15      43 ..     210     238 ..     197     244 .. 0.81
   2 ?   -1.2   0.1       2.1   8.1e+02     101     179 ..     327     422 ..     314     443 .. 0.62
   3 !   12.9   0.0    0.0001      0.04      15      57 ..     625     670 ..     611     707 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0022
   PF06414.7  15 kpkavllgGqpGAGKtslaellleelaag 43 
                 ++   +l+G pG GKt++ae l +++aag
  MMETSP0890-20130614|1165_1 210 TKNNPILVGDPGVGKTAIAEGLAQRVAAG 238
                 555669****************9998655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.1
   PF06414.7 101 gtlrspdkarkiarklkkagykvevvivavpkelSelg.ilqRyeee.lae..............kge..gRrvpkevhdeayeglpesvealeaek 179
                 +tl++++   +  ++l+++  +v v    v+  +S+l+  +qRye                    +++  gR++p++  d   e +++ ++++ ++ 
  MMETSP0890-20130614|1165_1 327 TTLAEYKQYIESDKALERRFQRVLVDEPSVEATVSILRgLKQRYEVHhG-VrildsalvaaarltDRYvgGRFLPDKAIDVIDEAAAKLNNEVTSRP 422
                 5666666666666677776666666666777777776426778887731.23444455544444333353477777777766666666666555555 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.0001
   PF06414.7  15 kpk.avllgGqpGAGKtslaellleela..agnivridaDelrkyh 57 
                 +p+ a++++G++G GKt la+ l ee+    +  +rid  e+ +++
  MMETSP0890-20130614|1165_1 625 RPVaAFMMAGPTGVGKTLLAKVLAEEVFddPNALIRIDMSEYGEKF 670
                 56515679****************9998888899999999987776 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00026       0.1       9      64 ..     197     253 ..     188     271 .. 0.79
   2 !    8.9   0.0    0.0017      0.67      25      43 ..     630     648 ..     627     658 .. 0.90
   3 ?   -1.2   0.0       2.1   8.2e+02     108     135 ..     701     728 ..     680     738 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00026
  PF01078.16   9 eeakralei.aaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasva 64 
                 +e +ra+++ +   + n +lvG pG GKt +a+ l++ +++ +  eal  +++ s+ 
  MMETSP0890-20130614|1165_1 197 DEIRRAIQVlSRRTKNNPILVGDPGVGKTAIAEGLAQRVAAGDVPEALRGRSVISLD 253
                 456888887244567889*****************9999999999999888888775 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0017
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 ++++Gp G GKt+lak l+
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLA 648
                 79**************986 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 2.1
  PF01078.16 108 GvLfLDElpefkrkvleaLRePledgev 135
                  v++LDE+ + +++v++++ + l+dg++
  MMETSP0890-20130614|1165_1 701 AVVLLDEIEKADESVFDIFLQLLDDGRL 728
                 6999**************9999999876 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.2e-05     0.032       4      32 ..     215     243 ..     213     293 .. 0.89
   2 ?   -0.7   0.0       2.1   8.1e+02     126     149 ..     418     440 ..     413     449 .. 0.76
   3 ?    6.2   0.0     0.016       6.4       5      23 ..     632     650 ..     629     655 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.2e-05
   PF05729.7   4 ilqGeaGsGKTtLlqklasawakgklpqd 32 
                 il+G++G+GKT+ + +la+  a+g+ p+ 
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVAAGDVPEA 243
                 799*********************99874 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2.1
   PF05729.7 126 ltvrpdalrdleeqleeaivleve 149
                 +t+rpdal  +e+q+++   +e  
  MMETSP0890-20130614|1165_1 418 VTSRPDALDAVERQIVQL-EMERL 440
                 89************9998.33333 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.016
   PF05729.7   5 lqGeaGsGKTtLlqklasa 23 
                 + G+ G+GKT L++ la++
  MMETSP0890-20130614|1165_1 632 MAGPTGVGKTLLAKVLAEE 650
                 78************99976 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00052       0.2      37      61 ..     215     239 ..     196     255 .. 0.86
   2 ?    0.5   0.0      0.75   2.9e+02     129     166 ..     270     308 ..     258     318 .. 0.81
   3 ?    5.9   0.0     0.017       6.6      36      57 ..     630     651 ..     620     711 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00052
   PF13481.1  37 llaGapgtGKStlalqlaaavatGe 61 
                 +l+G+pg+GK+ +a  la +va+G+
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVAAGD 239
                 79********************985 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.75
   PF13481.1 129 dlerllaaieelegpdlvviDtlsrlvggdensnsdv.g 166
                  l++++++++e +g  ++ iD + ++vg++  s+ ++ +
  MMETSP0890-20130614|1165_1 270 RLKAVVDEVKEANGNIILFIDEIHTVVGAGATSSGAMdA 308
                 45678889999999****************999999842 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.017
   PF13481.1  36 tllaGapgtGKStlalqlaaav 57 
                  + aG++g+GK+ la  la  v
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEEV 651
                 688************9988665 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4     0.004       1.6      51      75 ..     212     236 ..     171     299 .. 0.61
   2 !   10.1   0.0   0.00068      0.27      52      74 ..     629     651 ..     599     657 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.004
   PF05496.7  51 dhvllyGpPGlGkttlakiiakelg 75 
                 +  +l+G PG+Gkt++a+ +a+ + 
  MMETSP0890-20130614|1165_1 212 NNPILVGDPGVGKTAIAEGLAQRVA 236
                 334789*********9998887654 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00068
   PF05496.7  52 hvllyGpPGlGkttlakiiakel 74 
                   +++Gp G+Gkt lak++a+e+
  MMETSP0890-20130614|1165_1 629 AFMMAGPTGVGKTLLAKVLAEEV 651
                 5789*****************96 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   0.00021     0.082       9      39 ..     212     239 ..     201     278 .. 0.81
   2 ?    5.2   0.0      0.04        15      14      33 ..     631     649 ..     612     663 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00021
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaallaare 39 
                 +np+lv  G PG GKT ++a + a+++aa +
  MMETSP0890-20130614|1165_1 212 NNPILV--GDPGVGKT-AIAEGLAQRVAAGD 239
                 588888..********.******99996533 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.04
   PF13245.1  14 vvtGgPGtGKTttlaaiiaa 33 
                 +  G+ G GKT +la++ a+
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKT-LLAKVLAE 649
                 348********.88888776 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0092       3.6       3      23 ..     216     236 ..     215     250 .. 0.89
   2 !    9.9   0.0    0.0019      0.73       2      24 ..     631     653 ..     630     669 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0092
  PF00910.17   3 lyGpsgeGKStlakeLakall 23 
                 l+G++g+GK+ +a+ La++++
  MMETSP0890-20130614|1165_1 216 LVGDPGVGKTAIAEGLAQRVA 236
                 79***************9987 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0019
  PF00910.17   2 wlyGpsgeGKStlakeLakallk 24 
                 ++ Gp+g+GK++lak La+++ +
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKTLLAKVLAEEVFD 653
                 678***************99875 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.024       9.5       3      42 ..     194     233 ..     192     244 .. 0.87
   2 ?    4.8   0.0     0.045        18     102     135 ..     267     301 ..     247     373 .. 0.74
   3 ?    3.4   0.0      0.12        46      26      44 ..     633     651 ..     625     676 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.024
                 S-HHHHHHHHHHHHH..-SEEEEE--TT---HHHHHHHHH CS
  PF01637.13   3 DRekELkeleeilerepnsiiviyGprrsGKTaLlkeile 42 
                  R++E+++  ++l+r++++  ++ G  ++GKTa+ + +++
  MMETSP0890-20130614|1165_1 194 GRDDEIRRAIQVLSRRTKNNPILVGDPGVGKTAIAEGLAQ 233
                 79******9999999999999999*********8766555 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.045
                 .G--HHHHHHHHHH----EEEEEETGGGGG.---- CS
  PF01637.13 102 vflaleellealkkkgkkiiiiiDElqkli.lgln 135
                 +++ l+ + +++k+ + +ii+ iDE+ +++  g  
  MMETSP0890-20130614|1165_1 267 FEERLKAVVDEVKEANGNIILFIDEIHTVVgAGAT 301
                 5678999999******99*********99955444 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.12
                 E--TT---HHHHHHHHHH- CS
  PF01637.13  26 yGprrsGKTaLlkeileel 44 
                  Gp ++GKT L k+++ee 
  MMETSP0890-20130614|1165_1 633 AGPTGVGKTLLAKVLAEEV 651
                 6************999997 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0043       1.7       3      32 ..     215     245 ..     214     357 .. 0.77
   2 ?    1.0   0.3      0.85   3.3e+02      20      69 ..     390     442 ..     384     525 .. 0.72
   3 ?   -2.1   0.0       7.6     3e+03      40      87 ..     522     566 ..     493     615 .. 0.65
   4 ?    3.7   0.0      0.12        48       3      22 ..     631     650 ..     629     670 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0043
   PF13521.1   3 vitGgpstGKTtlleaLaar.gypvvpEvar 32 
                 +++G p++GKT ++e La+r     vpE+ r
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRvAAGDVPEALR 245
                 58999*************9976778999865 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.85
   PF13521.1  20 aar..gypvvpEvarevleeklakgeealpwe.edllafaeavleaqleqeaa 69 
                 ++r  g + +p+ a +v++e++ak +++  +  + l a+++++++ ++e++  
  MMETSP0890-20130614|1165_1 390 TDRyvGGRFLPDKAIDVIDEAAAKLNNEVTSRpDALDAVERQIVQLEMERLSL 442
                 55545555666777777777777777666666666666666666666555433 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 7.6
   PF13521.1  40 akgeealpweedllafaeavleaqleqeaaaaaskllfcDrglldtla 87 
                 + + e lp+++++l+ ae+ le +     + ++s + + D+ ++d +a
  MMETSP0890-20130614|1165_1 522 KLRYEILPEVFEKLQTAEKALESATT---SDTSSMVSVRDTVTPDDVA 566
                 44455666666666666666654332...2234555555555555555 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.12
   PF13521.1   3 vitGgpstGKTtlleaLaar 22 
                 ++ G+ ++GKT l++ La++
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKTLLAKVLAEE 650
                 578**************975 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.03        12       3      22 ..     215     234 ..     215     254 .. 0.90
   2 !    7.6   0.0    0.0072       2.8       3      22 ..     631     650 ..     629     674 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.03
   PF13671.1   3 llvGlpGsGKstlaerllkk 22 
                 +lvG pG GK+  ae+l+++
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQR 234
                 689*************9975 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0072
   PF13671.1   3 llvGlpGsGKstlaerllkk 22 
                 ++ G+ G GK+ la+ l+++
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKTLLAKVLAEE 650
                 8**************99875 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0006      0.23      54      94 ..     215     255 ..     177     295 .. 0.78
   2 ?    3.2   0.0     0.067        26      51      75 ..     628     652 ..     585     665 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0006
   PF06068.8  54 LlaGppgtGktalaiaiskelg.edvpfvalsgsevyslevk 94 
                 +l+G+pg Gkta+a ++++ ++  dvp  al g  v sl++ 
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVAaGDVP-EALRGRSVISLDMG 255
                 578*****************9944555.67788888888775 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.067
   PF06068.8  51 ravLlaGppgtGktalaiaiskelg 75 
                  a ++aGp+g Gkt la  +++e+ 
  MMETSP0890-20130614|1165_1 628 AAFMMAGPTGVGKTLLAKVLAEEVF 652
                 3789*************99999875 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   2.4    0.0071       2.8       5     210 ..     215     498 ..     211     509 .. 0.56
   2 !    8.0   0.1    0.0035       1.4       4      49 ..     630     677 ..     628     834 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0071
   PF12846.2   5 lilGppGsGKSvllkklvlqlla.......rgprvviiDp.....ggeys.glaralggqvidlgegkgis........................lNPfdigpteagaekleaeadphsreldlllalle..tdselrnrpledeeeaa.....lsralrelyeeegia...................................tlaqrqayPt.lgdllealreeeeelaeealarde....rreaaeelalalerl..ldgalgelFdgpttfdldld.ariivfdlsglk 210
                 +++G+pG GK+  +  l+ +++a       rg+ v+ +D+     g  y+ ++ + l + v+d  ++++                           N + ++++++  +       + ++ l++  +++e  ++ e+r++++  +e+++     + r l++ ye +++                                    + + ++++ t  +d l+a+++++ +l+ e l  +     +r +  + +++  rl  ld+ l+el d++ +++l+++ +r  v d+s lk
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRVAAgdvpealRGRSVISLDMgaliaGAAYRgSFEERL-KAVVDEVKEANGNiilfideihtvvgagatssgamdaSNLLKPALARGELR------CVGATTLAEYKQYIEsdKALERRFQRVLVDEPSVeatvsILRGLKQRYEVHHGVrildsalvaaarltdryvggrflpdkaidvideaaA-KLNNEV-TsRPDALDAVERQIVQLEMERLSLQSeqakERGKGGNAQQTTLRLeaLDTQLAELRDDQERLNLSWEaQRGLVTDVSSLK 498
                 789*******************9999999999********66666444442222222.344444444433223343333333444444445555555555444333332......222333333333333332223333333333333333334777777777777777777777777777777777777777777777776531.222222.22666666666666333333333333334434444444444444434477888899999988888888899999999988 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0035
   PF12846.2   4 tlilGppGsGKSvllkklvlqllargprvviiDpggeys...glaralg 49 
                 +++ Gp+G GK+ l+k l++++      ++ iD+  ey      +r++g
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEEVFDDPNALIRIDM-SEYGekfAVTRLIG 677
                 7999***************999988887777887.33333345556665 PP

>> PF06309.6  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.6e-05     0.026      15      80 ..     587     654 ..     579     670 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.6e-05
   PF06309.6  15 nleeLekdlekklfGqhlvkklvvksvk.aylenekpkkpLv.lsfhGwtGtGknfvaeiiaenlyrd 80 
                 +l +Le++l+++++Gq  + +lv  +v+ +     +p++p++ + + G tG Gk  +a+++ae+++ d
  MMETSP0890-20130614|1165_1 587 KLLDLESSLATRVVGQPDACALVADAVRrSKAGLGDPTRPVAaFMMAGPTGVGKTLLAKVLAEEVFDD 654
                 56789*********************972555667999998626789******************976 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.034        13       7      23 ..     215     231 ..     209     239 .. 0.81
   2 !    7.5   0.0    0.0063       2.5       6      51 ..     630     681 ..     627     722 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.034
   PF13479.1   7 liYGkpGiGKTslaktl 23 
                 ++ G+pG+GKT  a  l
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGL 231
                 689********999887 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0063
   PF13479.1   6 vliYGkpGiGKTslaktlpktlfldleagakavkdlkrgdsvdvr.......s 51 
                 +++ G+ G+GKT lak l + +f d +a   ++   + g+++ v         
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEEVFDDPNAL-IRIDMSEYGEKFAVTrligsppG 681
                 5778*************988877776664.45555555666666555555552 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.068        27      14      75 ..     211     374 ..     197     420 .. 0.80
   2 ?    7.4   0.0    0.0061       2.4      17      37 ..     630     650 ..     619     841 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.068
                 S-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTS........................................................................................................EEEEEESSHHHHHHHHHHHHHHTTT.S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  PF00270.24  14 ggdvlvaaeTGsGKTlaflipvlqilletlkkttik........................................................................................................kalivaPtreLaeqtlnnlkkfkky.p 75 
                 +++ +++++ G GKT+++   + q+++ ++ ++                                                                                                           ++l+ +P+ e +  +l+ lk++ +  +
  MMETSP0890-20130614|1165_1 211 KNNPILVGDPGVGKTAIAE-GLAQRVAAGDVPE--AlrgrsvisldmgaliagaayrgsfeerlkavvdevkeangniilfideihtvvgagatssgamdasnllkpalargelrcvgattlaeykqyiesdkalerrfqRVLVDEPSVEATVSILRGLKQRYEVhH 374
                 46678899999****9999.5778888775522..134566778888888888888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999887643 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0061
                 EEEEC-TT---HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  17 vlvaaeTGsGKTlaflipvlq 37 
                  ++a++TG GKTl + + + +
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEE 650
                 589**********99875544 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.018         7      35      59 ..     211     235 ..     184     283 .. 0.79
   2 ?    5.4   0.0     0.021       8.2      38      58 ..     630     650 ..     620     698 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.018
                 TSBEEEE-------HHHHHHH---- CS
  PF03193.11  35 dktsvlvGqSGvGKSsLinallpel 59 
                 ++  +lvG  GvGK+++ + l+++ 
  MMETSP0890-20130614|1165_1 211 KNNPILVGDPGVGKTAIAEGLAQRV 235
                 34569************99998764 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.021
                 EEEE-------HHHHHHH--- CS
  PF03193.11  38 svlvGqSGvGKSsLinallpe 58 
                  +++G++GvGK+ L ++l++e
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEE 650
                 5789********999999876 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.2        78      12      40 ..     202     232 ..     192     280 .. 0.81
   2 ?    8.1   0.0    0.0031       1.2      22      44 ..     630     652 ..     624     663 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.2
  PF02562.11  12 ylealk..kndivfaiGpaGtGKTylavala 40 
                 ++++l   +++  +++G  G GKT +a  la
  MMETSP0890-20130614|1165_1 202 AIQVLSrrTKNNPILVGDPGVGKTAIAEGLA 232
                 5555555566778899**********97776 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0031
  PF02562.11  22 vfaiGpaGtGKTylavalaveal 44 
                  +++Gp+G GKT+la +la e++
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVLAEEVF 652
                 5789***********99997766 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.05        19      19      39 ..     215     235 ..     204     241 .. 0.88
   2 ?    5.7   0.0     0.025       9.6      14      39 ..     626     651 ..     617     659 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.05
  PF02367.12  19 lLsGdlGaGKTtlvkglakgl 39 
                 +L Gd G GKT ++ gla+ +
  MMETSP0890-20130614|1165_1 215 ILVGDPGVGKTAIAEGLAQRV 235
                 589**************9976 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.025
  PF02367.12  14 agdvvlLsGdlGaGKTtlvkglakgl 39 
                 + + +++ G+ G GKT l+k la+++
  MMETSP0890-20130614|1165_1 626 PVAAFMMAGPTGVGKTLLAKVLAEEV 651
                 5567899***************9876 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       4.2       1      37 [.     195     229 ..     195     236 .. 0.86
   2 ?    2.7   0.0      0.11        42      22      39 ..     630     647 ..     612     679 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.011
                 -HHHHHHHHHHHHTTTSSSEEEEEE-------HHHHH CS
  PF00931.17   1 rekevekviekLleeeeelkvvglvGmgGvGKttlak 37 
                 r++e+++ i+ L++  ++  +  lvG +GvGKt +a+
  MMETSP0890-20130614|1165_1 195 RDDEIRRAIQVLSRRTKNNPI--LVGDPGVGKTAIAE 229
                 57899999*****98877776..79*********997 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.11
                 EEEE-------HHHHHHH CS
  PF00931.17  22 vglvGmgGvGKttlakqv 39 
                   + G  GvGKt lak  
  MMETSP0890-20130614|1165_1 630 FMMAGPTGVGKTLLAKVL 647
                 5678********988744 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.082        32       4      24 ..     216     236 ..     214     239 .. 0.87
   2 ?    2.5   0.0      0.24        93       3      23 ..     631     651 ..     629     664 .. 0.85
   3 ?    1.0   0.0      0.69   2.7e+02      64     107 ..     701     744 ..     692     753 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.082
   PF07726.6   4 legvPGlaktllvkalakald 24 
                 l g PG++kt +++ la+ + 
  MMETSP0890-20130614|1165_1 216 LVGDPGVGKTAIAEGLAQRVA 236
                 6789*************9875 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.24
   PF07726.6   3 llegvPGlaktllvkalakal 23 
                 ++ g  G++ktll+k la+ +
  MMETSP0890-20130614|1165_1 631 MMAGPTGVGKTLLAKVLAEEV 651
                 677889************876 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.69
   PF07726.6  64 nllladeinrappktqsalleameerqvtve.gethklpepflvl 107
                  ++l dei +a   +   +l+ +++ ++t + get ++ +  ++l
  MMETSP0890-20130614|1165_1 701 AVVLLDEIEKADESVFDIFLQLLDDGRLTDGqGETVNFRD-CIIL 744
                 5899********************9999975144554443.3444 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.0     0.002      0.77      40     144 ..     376     483 ..     350     559 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.002
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX.....XXXXXXXX..XXXXXX. CS
  PF01496.14  40 lrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk...veelrelssldeefkalr.aaeglklg 144
                 +r l+s + +a+  + +    + +p++  ++ + e + +l++e+ +  + l+++e+++ +le +r  l++e+ +   +    ++ +  l+ ld + ++lr ++e+l+l+
  MMETSP0890-20130614|1165_1 376 VRILDSALVAAARLTDRYVGGRFLPDK-AIDVIDEAAAKLNNEVTSRPDALDAVERQIVQLEMERLSLQSEQAKERGKGgnaQQTTLRLEALDTQLAELRdDQERLNLS 483
                 555555555555555545555555555.799999***********************************9999988854777666778889998888887333444444 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.9       1.9   7.5e+02      85     122 ..     413     450 ..     396     467 .. 0.59
   2 ?    9.1   4.4     0.002       0.8     103     180 ..     462     545 ..     455     551 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.9
   PF04156.9  85 esesqlseleeeleqleerlaeleseledleedlellq 122
                 +++++++  ++ l+++e+++  le e ++l++++ +++
  MMETSP0890-20130614|1165_1 413 KLNNEVTSRPDALDAVERQIVQLEMERLSLQSEQAKER 450
                 44444444455555555555555555555555555544 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.002
   PF04156.9 103 rlaeleseledleedlellq...eelksleerlesleesikelakeirelr...eeisdlkeevqelrselerlqedlqrlqek 180
                 rl++l ++l +l++d+e l+   e+ + l + + sl+++i++++ +i+e +   +    +k + + l ++ e+lq++  +l+ +
  MMETSP0890-20130614|1165_1 462 RLEALDTQLAELRDDQERLNlswEAQRGLVTDVSSLKDEIDKYETQIAEAEknyDLETAAKLRYEILPEVFEKLQTAEKALESA 545
                 678888999999999999999999999***************************9*******************9999998876 PP

>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4    0.0048       1.9      30      63 ..     416     449 ..     408     469 .. 0.85
   2 ?   -0.9   0.1       4.5   1.8e+03      31      54 ..     493     516 ..     485     557 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0048
   PF11488.3  30 kelesldkeleelksqklklelelalletqvdrd 63 
                 +e++s+ ++l+ +++q+++le+e+ +l ++ +++
  MMETSP0890-20130614|1165_1 416 NEVTSRPDALDAVERQIVQLEMERLSLQSEQAKE 449
                 8999999****************99999988877 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 4.5
   PF11488.3  31 elesldkeleelksqklklelela 54 
                 ++ sl +e++  ++q+ + e+ + 
  MMETSP0890-20130614|1165_1 493 DVSSLKDEIDKYETQIAEAEKNYD 516
                 555666666666666666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 1.69u 0.39s 00:00:02.08 Elapsed: 00:00:01.19
# Mc/sec: 1866.74
//
Query:       MMETSP0890-20130614|1160_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-19   70.8   0.0      2e-19   69.9   0.0    1.5  1  PF00089.21 Trypsin
    5.1e-07   29.9   0.4    8.3e-07   29.2   0.3    1.4  1  PF13908.1  Wnt and FGF inhibitory regulator
     0.0035   16.6   0.0     0.0054   16.0   0.0    1.2  1  PF13567.1  Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
      0.011   15.2   0.1      0.017   14.6   0.1    1.2  1  PF04156.9  IncA protein
      0.037   13.7   0.3      0.077   12.7   0.2    1.5  1  PF11980.3  Domain of unknown function (DUF3481)
       0.06   12.9   0.1       0.14   11.7   0.0    1.6  1  PF10413.4  Amino terminal of the G-protein receptor rhodopsin
      0.092   10.6   0.7       0.13   10.2   0.5    1.1  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
       0.12   10.4   0.0       0.16   10.0   0.0    1.1  1  PF05510.8  Sarcoglycan alpha/epsilon


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.2e-22     2e-19     126     219 ..       2     110 ..       1     111 [. 0.89

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 1.2e-22
                 CHHBSSSTS....BESBCBCEEEEEBEHHHHHHT..TTTT.....STTTEEEEEST.SSSB---------EEEEET.....EB---BEEETTCCBTTB-EEEEEGGGGHHH CS
  PF00089.21 126 Gwgrtkekg....ksdtlqevevpvvsretcksa..yggk.....vtenmlcagak.ggkdacqGDSGGPlvcsdg.....elvGivswgkgcakgnrpgvytkvssyldw 219
                 G+g t+       +++ l ++++p+v+++tc+ +            +++ +cag++  g + cqGDSGGPl++++      e+vG+vswg gc+ +++ +vy++v+ +++ 
  MMETSP0890-20130614|1160_1   2 GFGDTHIADeiaeFPEDLYYITLPIVDDATCEDRlsT--FgyslfDNREEICAGYEdAGFAPCQGDSGGPLIVESSsdgefEVVGVVSWGPGCGGTGTVDVYADVTALVNY 110
                 777766666677899******************9662..23467799*********999****************99*****************************88776 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.3   4.9e-10   8.3e-07      72     179 .]     269     401 ..     233     401 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.9e-10
   PF13908.1  72 ptkdlkvvli...vsiilivvfivvliviftcskcvleka......................vrrqrpvvtsassttvqatplpqeeskapsypqpqsqgyetpppqgaqaaapyslalpepyllqpsgppay 179
                    dl +v+i   v + ++ ++++ ++v++ cs c l+                        ++++++ vt a+  ++ + p+++ e +  + p +  q+++ + p+ga + +++ +  p+  ++qp  pp y
  MMETSP0890-20130614|1160_1 269 RGGDLTTVIItasVAAAIVLLIVIIVVVCCFCSGCALYQRrkdvhqhrelsneeddiavtvrQKSSQEHVTMATERVQVTIPPGAVEGQTFYVPVRGNQTAVVQVPRGAAPGSTIAFDIPAGPPTQPPIPPQY 401
                 334445555411122333445567777788888999998899******************9888888888888888877777777777755559999***********************999999***9988 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.2e-06    0.0054      41     149 ..     287     397 ..     270     401 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.2e-06
   PF13567.1  41 lllllglllllaglylllrapqpssndlsrllesgkevtveGvvestprvtgsgrrfvlkveqv.sskgvskpvsgkllvtvpkdqat......glqpGdrirvtgklkrprpprN 149
                  ll+++++++++++  ++ +++++  + +r+l+ ++    e  ++ t r++ s+  +++++e+v ++   ++  ++  +v v+ +q +      g  pG +i++     +p  p  
  MMETSP0890-20130614|1160_1 287 VLLIVIIVVVCCFCSGCALYQRRKDVHQHRELS-NE----EDDIAVTVRQKSSQEHVTMATERVqVTIPPGAVEGQTFYVPVRGNQTAvvqvprGAAPGSTIAFDIPAGPPTQPPI 397
                 244444444444444444555555556666665.32....347999999999999*********77777788888889********99**999999******99988888877765 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   9.9e-06     0.017      36      86 ..     276     334 ..     271     346 .. 0.48

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.9e-06
   PF04156.9  36 lisallgivliAlgvvLlalgllllllkapvqseedekiee..........srlqeelses 86 
                 +i+++++ ++i+  ++++++++ +++++ + +  +++++++           ++  ++++s
  MMETSP0890-20130614|1160_1 276 VIITASVAAAIV--LLIVIIVVVCCFCSGCALYQRRKDVHQhrelsneeddIAVTVRQKSS 334
                 444555555554..44444445555555555555566666633444444443333344444 PP

>> PF11980.3  Domain of unknown function (DUF3481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.5e-05     0.077      13      62 ..     274     320 ..     256     339 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.5e-05
   PF11980.3  13 dailiyviamsgllvllvavclgvvLycaryhnatkkrslsvlyknenYn 62 
                   ++i+  ++  + ++l  v   vv++c ++  a+ +r + v  + e  n
  MMETSP0890-20130614|1160_1 274 TTVIITASVA--AAIVLLIVI-IVVVCCFCSGCALYQRRKDVHQHRELSN 320
                 3333333333..333333333.5899*******99999988887776555 PP

>> PF10413.4  Amino terminal of the G-protein receptor rhodopsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     8e-05      0.14       3      22 ..     354     374 ..     352     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8e-05
   PF10413.4   3 tEGknFYvPms.NktGvVRsP 22 
                  EG+ FYvP+  N+t vV  P
  MMETSP0890-20130614|1160_1 354 VEGQTFYVPVRgNQTAVVQVP 374
                 5********9669***99876 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   7.4e-05      0.13     138     212 ..     223     347 ..     209     351 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.4e-05
   PF05470.7 138 eeeeeeedededdegedeedeeedsvkkteevkksses................................................klkeekeeeedeeeeeeklskkdr..keeklmfkkkeei 212
                 +++++e+d+ +d+ g+d+ d++ d+  + + v+++++s                                                +++++++ e ++ee++  ++++++  +e++ m ++  ++
  MMETSP0890-20130614|1160_1 223 SDDDDEDDQVDDEGGDDQVDDTVDDEGDDQVVDQVVDSnvsssskkrggdlttviitasvaaaivlliviivvvccfcsgcalyqrRKDVHQHRELSNEEDDIAVTVRQKssQEHVTMATERVQV 347
                 34444555555555666667777777788888888888888899****************************************99777777777666666666655554004445555555555 PP

>> PF05510.8  Sarcoglycan alpha/epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.3e-05      0.16     258     371 ..     234     346 ..     224     364 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9.3e-05
   PF05510.8 258 kegkkqkeeeklskpsgdgileedkeyappreeveerdy.ldeivitlaipllvalllvllLalilcfqreglkkrdsrtsdsqlvhhssis.kstkkLreladqrevlrplstlk 371
                 +eg +++ + ++   +gd++  ++  +   +++ ++r   l+ ++it  +  +++ll+v++ ++  c++  g +  + r    q  + s+ + +  + +r+ + q +v+   + ++
  MMETSP0890-20130614|1160_1 234 DEGGDDQVDDTVD-DEGDDQVVDQVVDSNVSSSSKKRGGdLTTVIITASVAAAIVLLIVIIVVV--CCFCSGCALYQRRKDVHQHRELSNEEdDIAVTVRQKSSQEHVTMATERVQ 346
                 4454555555444.78999999999988888888888641566667777777777777666544..44444444444443333433333333244455555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1244  (0.0909889); expected 273.4 (0.02)
Passed bias filter:                      787  (0.0575629); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:00.91
# Mc/sec: 1111.28
//
Query:       MMETSP0890-20130614|1170_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   21.6   1.5    0.00016   21.6   1.0    2.5  2  PF06549.7 Protein of unknown function (DUF1118)


Domain annotation for each model (and alignments):
>> PF06549.7  Protein of unknown function (DUF1118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   1.0   1.2e-08   0.00016       2      52 ..      74     122 ..      73     146 .. 0.84
   2 ?    0.2   0.6     0.051   6.9e+02      30      74 ..     165     204 ..     152     212 .. 0.53

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.2e-08
   PF06549.7   2 lekrkvLskvekagLLskaeelGltLssiekLgllskaedlglLsllenaa 52 
                 + ++++Ls   ka LL   e+lGl+Ls iek  +l   e  glLs + ++ 
  MMETSP0890-20130614|1170_1  74 IQNKRLLSATCKADLLTTLEDLGLSLSDIEK--ILPAIEKAGLLSSASKNL 122
                 5789**************************7..688889999999988765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.051
   PF06549.7  30 iekLgllskaedlglLsllenaaaa....sPgaLasvaLpllvaaiaav 74 
                 +e          l +Ls  ++ ++a     P aL+s+ L+ + +ai av
  MMETSP0890-20130614|1170_1 165 LEA---------LIVLSDSTEYSSAgfilVPVALLSAILGGIPVAIDAV 204
                 333.........3344444433322111146666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.85
# Mc/sec: 600.50
//
Query:       MMETSP0890-20130614|1169_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-20   72.7   0.1      3e-20   72.3   0.1    1.2  1  PF01738.13 Dienelactone hydrolase family
    2.8e-06   27.0   0.8    4.3e-06   26.4   0.6    1.4  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.022   13.8   2.3      0.051   12.6   0.9    2.1  1  PF00326.16 Prolyl oligopeptidase family
      0.026   14.2   0.1      0.057   13.1   0.1    1.6  1  PF12146.3  Putative lysophospholipase


Domain annotation for each model (and alignments):
>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   8.9e-24     3e-20       2     216 ..      47     266 ..      46     268 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 8.9e-24
  PF01738.13   2 eaylatpkna..gkapavvviqeifGvnknirdiarrlaeeGyvalapdlYarqgldandtaeaasalrellkkreeavlddlkaainylk.......slpevstkkvgvvGfClGGalalllAaenpevdaavafYGaltlekpleeaakikapilahlgeeDpfipaeaaedleealakankd.lelkiYpgagHaFaadsresydeaaaedawervleffkq 216
                 e+y+a+p+++  ++ pa v+++ ++G+ +   + a++ ae+Gy a+a d+Y   + +a+d +ea ++++   +++ ++++ +++  ++ lk       + p+ +++ +++ G+C+GG + l++ +   ++ ++ +f++  + +   +   + +  ++ah+g+ D   +   ++ l+ al++ n+  ++   Y + +H+F    +++yd+ +a ++      ff++
  MMETSP0890-20130614|1169_1  47 EGYVAYPTTSsrSELPAMVIVHQWYGLGEYEMHRAEEAAENGYYAFAIDVYGYGQ-RATDNSEAGALAGAARSDE-AKLVMIAEGGVDQLKpggvlenEGPSINQSAIVSFGYCFGGGVLLMMGRDGTDLFGMSVFHA--SFPDLTSGWSSPDVKVMAHHGQLDFAGDDG-LNSLHDALTTGNVSvWQTAYYGNQAHGFSDFLNAAYDPLSASQSHDSAYAFFAN 266
                 689*****9988899*************666678******************999.99**999999998776666.777777755555554222222255779999*********************99*********..6777777899999***********999999.7*******9999873688899999********************9999999986 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.6   1.3e-09   4.3e-06       2     112 ..      64     206 ..      63     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.3e-09
   PF12695.2   2 vvlvhGaggdssayeplaealakrgfavvavdlpghgasegaaaakrvl............................aadll....dleriilvGhSlGGgvalelagrd.drvkglvllapfpd.gedlakltlpvllihGtrD 112
                 +v+vh + g ++     ae+ a++g+  +a+d  g+g+++  +  + +l                            ++  +    + + i+ +G ++GGgv l++ ++  d +   v++a+fpd ++ ++  +++v++ hG+ D
  MMETSP0890-20130614|1169_1  64 MVIVHQWYGLGEYEMHRAEEAAENGYYAFAIDVYGYGQRATDNSEAGALagaarsdeaklvmiaeggvdqlkpggvlEN--EgpsiNQSAIVSFGYCFGGGVLLMMGRDGtDLFGMSVFHASFPDlTSGWSSPDVKVMAHHGQLD 206
                 677888887777777899********************96666444444466677777777899999877777776533..14588889****************66666777778888899***99***************998 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   1.5e-05     0.051      47     111 ..     132     198 ..      75     218 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHH--.---GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-...- CS
  PF00326.16  47 Dfiaaaealakeg.yvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsl.l 111
                 D+++    l +eg  ++++ ++ +G  +GG + +++  + +dlF + v ++++ d+++ +s+++   
  MMETSP0890-20130614|1169_1 132 DQLKPGGVLENEGpSINQSAIVSFGYCFGGGVLLMMGRDGTDLFGMSVFHASFPDLTSGWSSPDVkV 198
                 555555566888889*****************************************99988877663 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.7e-05     0.057      15      59 ..      60     104 ..      48     125 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.7e-05
   PF12146.3  15 pkaavvlvhglaEhsgrYqelaedLaaqGyavyayDhrGhGkseg 59 
                 +  a+v+vh  +       + ae+ a++Gy  +a+D  G G+ + 
  MMETSP0890-20130614|1169_1  60 ELPAMVIVHQWYGLGEYEMHRAEEAAENGYYAFAIDVYGYGQRAT 104
                 567889999998877777799********************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:01.22
# Mc/sec: 548.02
//
Query:       MMETSP0890-20130614|1174_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-43  148.7   0.1    1.7e-43  148.3   0.0    1.1  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   1.2e-47   1.7e-43       2     154 ..      33     212 ..      32     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 148.3 bits;  conditional E-value: 1.2e-47
  PF00160.16   2 vdietsskGrivieLfedkaPktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkga.........ngeekkagge........s............ipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlDg.......kytvFGkVvegmdvvekieavetde..kpeknvkiksvg 154
                 ++++ts kG++++eL+ dk P+t+ nF +la +gfYdg++fhrvik+fm+q+G+p+++ +                           +            ipdE   +  ++ +G+++ma+tg +p+s+gsq fI+++++++lD         + vFGkVvegmd+v+ ieav td+   p ++v+++ ++
  MMETSP0890-20130614|1174_1  33 ARFKTS-KGNFDVELYVDKLPITASNFKDLASTGFYDGLTFHRVIKNFMCQFGCPHSNPEkqtgmpgtgG--------PkpgtsfelPdgttitrnaggnIPDELI-EPISNSPGTISMANTG-APDSGGSQIFINTNNNKFLDYfdssspsAHPVFGKVVEGMDIVKSIEAVRTDGrdMPIEPVVVETIE 212
                 578995.***********************************************9986553333332220........2333333330344444555566****95.66899**********7.6*******************6666677689******************9999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 858.69
//
Query:       MMETSP0890-20130614|1177_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-45  153.8   0.2      4e-45  153.6   0.1    1.0  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.1   2.9e-49     4e-45       1     154 [.       7     169 ..       7     170 .. 0.86

  Alignments for each domain:
  == domain 1    score: 153.6 bits;  conditional E-value: 2.9e-49
  PF00160.16   1 lvdietss..kGrivieLfedkaPktvenFlklakeg...........fYdgtkfhrvikgfmiqgGdpsgkgangeekkagges.....ipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde.kpeknvkiksvg 154
                 ++di++++  +Gri++ L +d +Pkt+enF+ l++ g           +++g++fhrvi +fm+qgGd++  +   +    gges     ++dE+  ++lkh  +G+l+ma+ g  pn+ngsqFf+++ ++++lDgk++vFG V++gmdvv+ ieav++++ k+ k+v+i ++g
  MMETSP0890-20130614|1177_1   7 FFDITIGGspAGRIEMTLRADVVPKTAENFRALCT-GekgtgssgkplHFKGSSFHRVITDFMCQGGDFTRGNG--T----GGESiygskFADEN--FQLKHtGPGILSMANAG--PNTNGSQFFLCTVQTSWLDGKHVVFGSVTKGMDVVKNIEAVGSQSgKTAKPVVIADCG 169
                 57899987999***********************7.335577888999********************776644..3....3432223349****..56788688******998..7**************************************976555699999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 624.51
//
Query:       MMETSP0890-20130614|1168_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-05   21.7   0.0       0.52    9.5   0.0    2.7  2  PF01370.16 NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   4.2e-05      0.57       1      27 [.      25      54 ..      25     104 .. 0.80
   2 !    9.5   0.0   3.8e-05      0.52     142     235 ..     209     313 ..     141     314 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.2e-05
                EEEE--------HHHHHHHHH-TEEE...E CS
  PF01370.16  1 ilVtGatGfiGsalveallekgyevv...n 27
                +lV+G+ G++G  ++e+ll +g +v+   +
  MMETSP0890-20130614|1168_1 25 VLVVGGLGLLGNEVCEKLLLRGNTVIccdE 54
                79**********************876653 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH......---S.......EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS......--EEEEE CS
  PF01370.16 142 aaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkil......egee.......vtllgdGtqlRdflyveDvaealllvlehgd.....vageiyni 235
                 +aK+++ +      ++  +++ +lr f v+G r  + + +h+  +l ++i       e  +        +         df+ v+D+aea+l+ l++ +     ++  ++n+
  MMETSP0890-20130614|1168_1 209 VAKASSFHSS---VNTAVTRVAVLRFFGVFGGR--TSFARHLAQRLRKRIDspihtpE--PegvsnllDVERQGAYGCADFCAVSDAAEACLRTLDAFRdasgpPGTTAVNV 313
                 3333333332...33346899999******999..88888888888888875555440..2555466433334566699***************999886666555555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.92
# Mc/sec: 1448.23
//
Query:       MMETSP0890-20130614|1182_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.69    9.1  45.0          1    8.6  31.2    1.3  1  PF05672.6  MAP7 (E-MAP-115) family
       0.75    8.1  27.6        1.1    7.5  19.1    1.3  1  PF02029.10 Caldesmon
        4.7    6.9  13.7        5.7    6.6   9.5    1.3  1  PF06459.7  Ryanodine Receptor TM 4-6
          9    5.9  21.0         11    5.6  14.5    1.1  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> PF05672.6  MAP7 (E-MAP-115) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  31.2    0.0003         1      40     134 ..      68     155 ..      44     172 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0003
   PF05672.6  40 ekeeqerrekeerdrrkreelkrraaeerlrreeearrreeerarekeeklkrkaeeeekreqeeqeriekqkeeaearareeaervrlerekhl 134
                  + e+err++ e+++++ree+ r ++  + r e+ear ++e+ are +e+     e e+ re+e++e++e+ + + e   r e e++  er++ +
  MMETSP0890-20130614|1182_1  68 GRLEEERRLE-EEEKKEREEKVRITKVRKEREEAEARAQNEKLAREAAER-----EREAIRERERKEKLERARAQ-EEALRLEFEQQEAERQERI 155
                 3445555543.334555666555555444555556666666666666665.....44455566665555554433.2223333333333332222 PP

>> PF02029.10  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  19.1   0.00033       1.1      42     157 ..      44     155 ..      27     188 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00033
  PF02029.10  42 nsvadeevktstddeaallerlarrEerrqkrlqealerqkefdptitdasls..epsrraqedeaaenekaekEekeesrqereEveEtevvtkseqknesrdaeekkkeekekeee 157
                 +  a+ ++++s dd+a +l r+     ++++rl+e  ++ +e + +it+   +  e+ +raq+++    e+ae+E ++ + +er+E+ E   ++++e+       e +++e + +e+ 
  MMETSP0890-20130614|1182_1  44 KKLAKKQISQSIDDDALTLCRRELGRLEEERRLEEEEKKEREEKVRITKVRKEreEAEARAQNEK-LAREAAEREREAIRERERKEKLER-ARAQEEALRL----EFEQQEAERQERI 155
                 4678889999**********999999999999*99999999999999876544004446666663.334444445554555555555554.3333333333....2222222223322 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.5    0.0017       5.7      82     159 ..      71     148 ..      25     185 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
   PF06459.7  82 eaaaekk...elkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaeaeifkeleiyr 159
                 e+    +   e++++e e+k  ++k+ +e +e+e++a++e+ +++  + + +   e+++++k e++ a+e ++  e+e+++
  MMETSP0890-20130614|1182_1  71 EEE---RrleEEEKKEREEKVRITKVRKEREEAEARAQNEKLAREAAEREREAIRERERKEKLERARAQEEALRLEFEQQE 148
                 222...133366777888888899999999999888888888888778788888888888888888888888887777775 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  14.5    0.0034        11      92     220 ..      67     156 ..      30     195 .. 0.34

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0034
   PF05279.6  92 laeekekqkve.eevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekskepveeaekekaeakeveeedkeeeaeedek 220
                 l + +e++++e ee kE ++kv+   v                                    k  ee+E+ ++ e+ ++e+a+++ +   ++e++ek      e ++ ++ea ++e e++e e++e  +
  MMETSP0890-20130614|1182_1  67 LGRLEEERRLEeEEKKEREEKVRITKV-----------------------------------RKEREEAEARAQNEKLAREAAEREREAIRERERKEKL-----ERARAQEEALRLEFEQQEAERQERIR 156
                 111111111110112222222222222...................................2222222222222222222222211111111111111.....11111222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1697  (0.124122); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                       127  (0.00928906); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.44s 00:00:01.29 Elapsed: 00:00:01.10
# Mc/sec: 481.45
//
Query:       MMETSP0890-20130614|1185_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.44s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 686.08
//
Query:       MMETSP0890-20130614|1193_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   38.0   0.2    3.6e-09   36.9   0.2    1.5  1  PF00929.19 Exonuclease


Domain annotation for each model (and alignments):
>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.2   2.7e-13   3.6e-09       2     160 ..     152     316 ..     151     319 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 2.7e-13
                 EEEEEE----T...TT--EEEEEEEEEETTEE.............EEEEEEEEEE-SSS.S--HHHHHH----HHHHTTSEEHHHHHHHHHHHHCHS-EEEETSHHHHCCHHHHHHHHCTTS-TTECGGGGECCCHHHHHCHHC---SHHHHHHHCT--STS-.....TTHHHHHHHHH CS
  PF00929.19   2 viDcEttglda...ekdeiieiaavsivggee............eigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklempkrndvldtlildkktlkelkrtslkklaekllleeiqr.....aHrAldDarat 160
                 +iDcE++  +    +k    e+ ++siv+               e ++  d +v+p  +  + d++ +++gi  ++l+       v  +  + ++ lkll  +++++++g++ ++dl  l+  +     ++dt  l++ +  +l+  slk++a+ +  e i+      +H++  Dar++
  MMETSP0890-20130614|1193_1 152 AIDCEMCICEDpitKKRTNRELVRFSIVDASDanvsiqaaenagEDDVILDSLVQPSLP--VVDYVSRIHGIDAQQLEH------VTFQRLHAQAALKLLC-CDRCVLIGHAIHNDLSSLQFAHD--C-IVDTSLLFRVAKNMLP--SLKDVAALVAPEPIKVdlqrrQHNSTVDARTS 316
                 8******99999*9999999999999999988899999999999999************..***********9999999......4444445555475555.678*************9999877..4.5555555566544555..466666666555554344457********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1091  (0.0797981); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.72
# Mc/sec: 1517.69
//
Query:       MMETSP0890-20130614|1190_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.1  10.6        1.6    6.5   7.3    1.2  1  PF02724.9 CDC45-like protein


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.3   0.00011       1.6      96     196 ..     192     281 ..     173     317 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00011
   PF02724.9  96 sdqvivfddgdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl.....akslrrrrrr 196
                 +  + ++++++ie+e ++e+  ++  ++            + ++d+e+++  +++ a++  ++ +d++ e    e++ed+++r+r+ +        +++l+r+rrr
  MMETSP0890-20130614|1190_1 192 NTMISIVEEENIEDEFSDEDPRNTVSRD------------QYQDDDEESQHTKSTYADHFYEEGHDSEIE----EDEEDPRKRRRNITTDDeessqSETLTRKRRR 281
                 4455555555555555555222222222............222222222222222222222222222211....22233333333333222111112222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.64
# Mc/sec: 2343.94
//
Query:       MMETSP0890-20130614|1195_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.6   0.0      0.071   12.8   0.0    1.3  1  PF13641.1 Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> PF13641.1  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-06     0.071       7      64 ..     220     279 ..     217     289 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.2e-06
   PF13641.1   7 vptlneddvlarvlesilaldy.aprlevivvvdgsdaetldvaeelaaaypdvr.vrvv 64 
                 +++ + dd++ ++l+s+  +d+ ++++++i++    da +++ a++l+++ p+++ v+vv
  MMETSP0890-20130614|1195_1 220 IVSTQLDDRVSKMLHSVFEIDQlEHTFDFIIGNSDPDASAFEKAAALRKQIPTEQcVHVV 279
                 66778899*************97888*******9999***************98634555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.74
# Mc/sec: 1110.74
//
Query:       MMETSP0890-20130614|1200_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 345.63
//
Query:       MMETSP0890-20130614|1201_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-19   68.5   0.1    6.7e-19   67.6   0.0    1.5  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    1.9e-13   50.3   0.2    5.3e-13   48.9   0.1    1.7  2  PF13012.1  Maintenance of mitochondrial structure and function
  ------ inclusion threshold ------
      0.028   14.3   0.1      0.058   13.3   0.1    1.5  1  PF12443.3  AT-hook-containing transcription factor


Domain annotation for each model (and alignments):
>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   1.5e-22   6.7e-19       6     110 ..      21     126 ..      16     130 .. 0.90

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 1.5e-22
  PF01398.16   6 vhleslvllkildhalrteke..evmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklrgrervVGWYhshphitvwlshvdvrtqamyqm 110
                  ++++ v+ +ildh++r+++   +v+G+l+G +n++  +eitn+fa+p+ e++ + +av +  ++++  +l +++ re +VGWY +    +  +++++  +++ y +
  MMETSP0890-20130614|1201_1  21 CKVHPIVVFSILDHYTRRHEGqeRVIGTLLGMMNEEGQLEITNCFAVPHTEKDGE-VAVGQTTNKAMCAMLSQINDREIIVGWYATSFADGTLMNESSTLIHDFYLQ 126
                 689**************998888*****************************999.777777778*********999*********998888899888888887755 PP

>> PF13012.1  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.83   3.8e+03      28      56 ..      84     112 ..      69     119 .. 0.66
   2 !   48.9   0.1   1.2e-16   5.3e-13      23     113 ..     220     310 ..     209     312 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.83
   PF13012.1  28 eseqkmLknLhkklweiglyledveagkl 56 
                  +   mL + +++   +g y  ++++g+l
  MMETSP0890-20130614|1201_1  84 KAMCAMLSQINDREIIVGWYATSFADGTL 112
                 44455677777777777777777776665 PP

  == domain 2    score: 48.9 bits;  conditional E-value: 1.2e-16
   PF13012.1  23 lsrkleseqkmLknLhkklweiglyledveagklplnhsilrklqsllnllpnlnnkeleeefnvetndqllvvylgkldrkqialhelie 113
                  + +les q +L    + l++  +y+++v+agk + +++  r++ s l+ lp+l+  ++++ fn + nd l+v+yl +++++q+a++ +i 
  MMETSP0890-20130614|1201_1 220 AADELESFQDSLHDIMQLLETCLNYVNQVIAGKRKSDPHTSRQIFSALDALPHLDPSDIDTHFNAHLNDLLMVSYLTQITKTQLAIAAKIH 310
                 55889999*****************************************************************************999886 PP

>> PF12443.3  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05     0.058      21      69 ..     188     236 ..     174     242 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-05
   PF12443.3  21 ylkacrelsptpqkdasksssyifqkirelkaeiykLkeqleeLkekvd 69 
                 +++ c++++ + q ++++s + +f k + ++     L +  + L + ++
  MMETSP0890-20130614|1201_1 188 SEHLCLQQMVDGQENEPFSEPETFAKLSTGQEAADELESFQDSLHDIMQ 236
                 6788***************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.98
# Mc/sec: 765.37
//
Query:       MMETSP0890-20130614|1198_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00063   19.3   0.0    0.00092   18.8   0.0    1.3  1  PF02146.12 Sir2 family
     0.0048   16.5   0.0     0.0048   16.5   0.0    1.1  1  PF00205.17 Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-07   0.00092     149     181 .]       2      35 ..       1      35 [. 0.89

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.3e-07
                 B-----.HHHHHHHHHHHH-SEEEE----S-STT CS
  PF02146.12 149 FGealp.eklkkllekveeadlllviGtSlkVap 181
                 FG+ ++ + ++++ ++v++adll++iGtSl V+p
  MMETSP0890-20130614|1198_1   2 FGQPIDlSLITSARQAVTQADLLIIIGTSLIVEP 35 
                 999999777788888*****************98 PP

>> PF00205.17  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     7e-07    0.0048      62     118 ..       5      62 ..       1      79 [. 0.75

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7e-07
                 B-SSCSCHHHHHHHHH-SEEEEES--SSTTTT--.CTCTTTCC..EEEEEESSCEECTT CS
  PF00205.17  62 ylgllgspaaneaieeaDlvlvlGarlsdvrttg.psakfppaa.kiihvdidpaeigk 118
                 ++ l  + +a++a+ +aDl++++G+ l        p+++  + +  i+ ++ d  e + 
  MMETSP0890-20130614|1198_1   5 PIDLSLITSARQAVTQADLLIIIGTSLIVEPANDlPWIAMRQ-GtPIVMINLDNTEYDE 62 
                 677777899***************999664444477775543.4489999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|1202_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.4    6.4   7.5       0.92    9.4   1.8    2.0  2  PF04697.8 pinin/SDK conserved region


Domain annotation for each model (and alignments):
>> PF04697.8  pinin/SDK conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.8   6.8e-05      0.92      90     131 ..      25      71 ..       6      74 .. 0.72
   2 ?   -2.0   0.1      0.21   2.9e+03     106     118 ..     234     246 ..     196     259 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.8e-05
   PF04697.8  90 rrarresrqesdaeddd.....dvkkpalqssvvatskertrrdliq 131
                 ++  res +e + ed+d     d+ k  + s + +tsk+++r+++i 
  MMETSP0890-20130614|1202_1  25 KKRSRESIDEDNDEDEDadsvlDLTKEKISSCIFSTSKKKARQQIIS 71 
                 33345555544444433334446899*****************9996 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.21
   PF04697.8 106 ddvkkpalqssvv 118
                   +kkp+  ss  
  MMETSP0890-20130614|1202_1 234 KPIKKPTSSSSKG 246
                 4567777666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1021  (0.0746782); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:01.54
# Mc/sec: 410.80
//
Query:       MMETSP0890-20130614|1204_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.79    9.2   3.2        1.2    8.7   1.1    1.9  2  PF11500.3 Spindle-body formation-associated protein
        6.2    6.5  11.1          4    7.1   2.2    3.0  2  PF11577.3 NF-kappa-B essential modulator NEMO


Domain annotation for each model (and alignments):
>> PF11500.3  Spindle-body formation-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.1   0.00017       1.2      97     141 ..       5      49 ..       2      60 .. 0.84
   2 ?    0.2   0.0      0.07   4.8e+02       6      29 ..      53      78 ..      49     118 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00017
   PF11500.3  97 ksyakkKdaealrlaeklkeeeakvaemeekvtelasqiaaevss 141
                 +++ +k  +e  +l+ ++k+e+++v e e+  +el+s+ aa ++s
  MMETSP0890-20130614|1204_1   5 RALHHKCRTERNELSLRFKREKQRVLELERANAELKSRCAALEVS 49 
                 667778889*************************99998776655 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.07
   PF11500.3  6 pktkltealedsRk.askkk.etkek 29
                ++tk  e+l + R+   ++  et  +
  MMETSP0890-20130614|1204_1 53 ERTKWAEKLRNVREqCLEDAvETFME 78
                57788888888887433333223332 PP

>> PF11577.3  NF-kappa-B essential modulator NEMO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.2   0.00058         4      40      66 ..       8      34 ..       5      36 .. 0.89
   2 ?    3.6   1.8    0.0074        51      22      43 ..      32      55 ..      31      83 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00058
   PF11577.3 40 qekqreErefleekleearellealsl 66
                + k r Er+ l+ +++ +++++ +l  
  MMETSP0890-20130614|1204_1  8 HHKCRTERNELSLRFKREKQRVLELER 34
                7899*******************9975 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0074
   PF11577.3 22 lkqsNqamKeRfEeLlk..wqekq 43
                l++ N ++K R+  L++  + e+ 
  MMETSP0890-20130614|1204_1 32 LERANAELKSRCAALEVsgFEERT 55
                789999999999866531133333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:01.19
# Mc/sec: 388.65
//
Query:       MMETSP0890-20130614|1207_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-36  125.1   5.1      3e-36  124.7   3.6    1.2  1  PF03962.10 Mnd1 family
     0.0043   15.5   0.6     0.0049   15.3   0.4    1.1  1  PF05422.7  Stress-activated map kinase interacting protein 1 (SIN1)
  ------ inclusion threshold ------
       0.04   13.4   0.6       0.11   12.0   0.1    2.1  2  PF11637.3  ATP-dependant DNA helicase UvsW
      0.061   13.3   2.5       0.17   11.9   0.8    2.1  2  PF13551.1  Winged helix-turn helix


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   3.6   8.8e-40     3e-36       2     187 ..      34     222 ..      33     223 .. 0.97

  Alignments for each domain:
  == domain 1    score: 124.7 bits;  conditional E-value: 8.8e-40
  PF03962.10   2 leifretktfytlKdLekllpkkkgissmsVKevlqsLvddnlvrveKiGtsnlYWsFpseakkklkteleklkkeleelkqrikelqaeiekekkkreet.eereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDnifllesylskkaglekeelr...kelgipeefd 187
                 l++ + +k+++ lK+Lekl++k +g  + +VKe+ + L ddn+v  +K+ + n++WsFp  ++ +lk ++ k+kk+l+ +++r++e++++ +k++ +re++  +r+ +l++l++l e++++l +++e+ +++dp ++e+++e t ++k++a rwt+n+  ++s+l +k +le+ +++   ++ g+p+++d
  MMETSP0890-20130614|1207_1  34 LKVYHTQKEPFGLKELEKLGSK-AGLYEKQVKEINTWLMDDNVVLSDKVSNVNIFWSFPAAQSVELKAAAHKAKKRLAFAEKRLAEAKEAQAKARIGREDKdGQRALKLKQLNDLVEKRRALDAKYETIKENDPLELERIQELTSHFKDNAVRWTENLMNIKSWLIQKNNLETYQVDgifEAAGLPKDLD 222
                 6778999***************.******************************************************************************667777**********************************************************************9999999999987 PP

>> PF05422.7  Stress-activated map kinase interacting protein 1 (SIN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   1.4e-06    0.0049      70     149 ..      69     185 ..      20     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-06
   PF05422.7  70 DLsededvgdddsvdItsysevpiqrrs....ntakklErLd...............................qavnltsakrsaikikssvskdyd..dersiseedelfkkkelP 149
                  L++d+ v +d+ +++ +++ +p+ + +    ++ k + rL                                + +n+ ++kr+a   k +  k+ d  ++  i+e+ ++fk + + 
  MMETSP0890-20130614|1207_1  69 WLMDDNVVLSDKVSNVNIFWSFPAAQSVelkaAAHKAKKRLAfaekrlaeakeaqakarigredkdgqralklKQLNDLVEKRRALDAKYETIKENDplELERIQELTSHFKDNAVR 185
                 59*********************9985422214556666777*******************************99**************99999977445789********998884 PP

>> PF11637.3  ATP-dependant DNA helicase UvsW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.4e-05      0.11       9      31 ..      45      73 ..      39      78 .. 0.84
   2 ?   -3.3   0.0         2   6.7e+03      41      51 ..     150     160 ..     141     165 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.4e-05
   PF11637.3  9 GleElEk......yYekrkKEvelkpsdD 31
                Gl+ElEk      +Yek++KE++   +dD
  MMETSP0890-20130614|1207_1 45 GLKELEKlgskagLYEKQVKEINTWLMDD 73
                9*****95555555*********999998 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2
   PF11637.3  41 rrkelekedea 51 
                 +r+ l+++ e+
  MMETSP0890-20130614|1207_1 150 KRRALDAKYET 160
                 44444444444 PP

>> PF13551.1  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   4.9e-05      0.17      43     106 ..     100     162 ..      92     164 .. 0.82
   2 ?    0.4   0.0      0.18   6.2e+02      61      95 ..     166     201 ..     162     212 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
   PF13551.1  43 alldrkrrsgrprnlrlseeqeaalvalarekppegqarwtlrllaeqlieeefgvtlskstvr 106
                 a+ ++ + + + +++rl e+ ea+++a + ++ ++gq  + l++l + l+e++++ +   +t++
  MMETSP0890-20130614|1207_1 100 AAAHKAKKRLAFAEKRLAEAKEAQAKARIGREDKDGQRALKLKQLND-LVEKRRALDAKYETIK 162
                 5555434444555669*********************99*******9.99*****999999986 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.18
   PF13551.1  61 eeqeaalvalarekppegqarwtlrl..laeqlieee 95 
                 + + +++ +l ++  +++ +rwt +l  ++ +li+++
  MMETSP0890-20130614|1207_1 166 PLELERIQELTSH-FKDNAVRWTENLmnIKSWLIQKN 201
                 5566777777654.44566999988722456666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       800  (0.0585138); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:01.40
# Mc/sec: 383.42
//
Query:       MMETSP0890-20130614|1210_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0038   16.2   0.1     0.0047   15.9   0.0    1.0  1  PF02702.12 Osmosensitive K+ channel His kinase sensor domain
  ------ inclusion threshold ------
      0.025   14.2   0.0      0.033   13.8   0.0    1.2  1  PF11020.3  Domain of unknown function (DUF2610)


Domain annotation for each model (and alignments):
>> PF02702.12  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.9e-07    0.0047     140     174 ..      15      49 ..       9      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.9e-07
  PF02702.12 140 gvevretvpDevleeadevelvDlepeeLlerlke 174
                 + +vre+v+++vl++  +v+  D++p++L+ r++e
  MMETSP0890-20130614|1210_1  15 NAQVREKVAEAVLKAMVSVKEADISPQNLIVRFAE 49 
                 679****************************9986 PP

>> PF11020.3  Domain of unknown function (DUF2610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-06     0.033      34      77 ..       5      49 ..       2      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-06
   PF11020.3 34 qakWLsk.eRgGqipekvkeslskLfeLakknnvpledLivyals 77
                q +WL k  R  q+ ekv e++ k +   k+ +++ ++Liv + +
  MMETSP0890-20130614|1210_1  5 QVTWLPKaCRNAQVREKVAEAVLKAMVSVKEADISPQNLIVRFAE 49
                99***8736*******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 308.62
//
Query:       MMETSP0890-20130614|1206_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-11   42.2   0.5    5.9e-11   41.8   0.3    1.2  1  PF08766.6  DEK C terminal domain
  ------ inclusion threshold ------
      0.056   12.6   0.0      0.097   11.9   0.0    1.3  1  PF03705.10 CheR methyltransferase, all-alpha domain


Domain annotation for each model (and alignments):
>> PF08766.6  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.3   8.7e-15   5.9e-11       2      54 .]       9      61 ..       8      61 .. 0.92

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 8.7e-15
   PF08766.6  2 deeikeeireiLkeaDLetvTkkkvrkeLearlgvdLserKafIkdlieefLa 54
                d+ + ++++e++   D +++T +++r++Le+++g+dL e+K++Ikd+++ +La
  MMETSP0890-20130614|1206_1  9 DSILIKKLQELVDCGDESELTARQLREALEKEYGIDLNEKKEWIKDQVKGILA 61
                66788999999999999********************************9985 PP

>> PF03705.10  CheR methyltransferase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.4e-05     0.097       6      25 ..      31      50 ..      27      53 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
  PF03705.10  6 erfrellykrtGidltdyKr 25
                +++re l+k++Gidl++ K+
  MMETSP0890-20130614|1206_1 31 RQLREALEKEYGIDLNEKKE 50
                589**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.83
# Mc/sec: 346.46
//
Query:       MMETSP0890-20130614|1212_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0079   16.0   0.4       0.01   15.6   0.3    1.2  1  PF02297.12 Cytochrome oxidase c subunit VIb
  ------ inclusion threshold ------
      0.063   13.1   0.9        2.2    8.1   0.1    2.1  2  PF06747.8  CHCH domain
       0.22   11.4   1.4       0.38   10.7   1.0    1.6  1  PF05051.8  Cytochrome C oxidase copper chaperone (COX17)


Domain annotation for each model (and alignments):
>> PF02297.12  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   2.3e-06      0.01      10      48 ..      17      67 .]      11      67 .] 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.3e-06
  PF02297.12 10 kaCweardeYfkCldkkgedane.............CkaerkeyesnCpksw 48
                kaC     ++f+C  +kg++a +             C +  + ye+ C + w
  MMETSP0890-20130614|1212_1 17 KACAVPAASFFDCFSAKGKQADDvadadagknalldCAQTLAAYEK-CMNRW 67
                78999999***********55555555667777888********87.99999 PP

>> PF06747.8  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.01        46       1      14 [.      19      32 ..      18      39 .. 0.77
   2 ?    8.1   0.1   0.00048       2.2      20      35 .]      51      66 ..      43      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.01
                ---HHHHHHHHHHH CS
   PF06747.8  1 CgeEfkellsClke 14
                C+     +++C+  
  MMETSP0890-20130614|1212_1 19 CAVPAASFFDCFSA 32
                78888888999865 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00048
                -TTHHHHHHHHHHHCC CS
   PF06747.8 20 skCrkefeafreCvkk 35
                 +C   + a+++C+++
  MMETSP0890-20130614|1212_1 51 LDCAQTLAAYEKCMNR 66
                68***********976 PP

>> PF05051.8  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   8.3e-05      0.38      21      43 ..      40      65 ..      15      67 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.3e-05
                HHHHH----S...CHHHHHHHHHHH- CS
   PF05051.8 21 eCilekgeee...CkklieaykaClr 43
                      g+++   C+++  ay++C+ 
  MMETSP0890-20130614|1212_1 40 VADADAGKNAlldCAQTLAAYEKCMN 65
                4445556665777************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 276.82
//
Query:       MMETSP0890-20130614|1214_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   12.7   0.0       0.18   11.5   0.0    1.6  1  PF00855.12 PWWP domain
       0.13   11.8   8.1       0.12   11.9   3.4    2.2  2  PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
       0.14   10.0  15.1      0.012   13.5   4.8    2.1  2  PF02724.9  CDC45-like protein
          3    7.2  13.0        7.6    5.9   9.0    1.6  1  PF05764.8  YL1 nuclear protein


Domain annotation for each model (and alignments):
>> PF00855.12  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.18       5      63 ..     296     368 ..     294     378 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-05
                 --EEEE-B---.BSEEEEEE-GCCTSSSS...........-SS-EEEEE..----EE.EEE-GCCEEEH.HHH CS
  PF00855.12   5 gdlVlaKvkgf.pwWPArvvsqketptsvr.........rksnkvkVlF..fgdhkt.awvskkklkpl.dsd 63 
                 g lV+a  ++  p WP  vv+ k ++++            k+ k  V+F  f++hk   +v+++ + p+ d++
  MMETSP0890-20130614|1214_1 296 GALVWAQSRSNePPWPSIVVDPKTISENNIklqeqaikaVKAQKHMVQFlgFPEHKSlGFVQASIIRPYnDAQ 368
                 67899998886589*********9976544699999999555666666644789999999********94444 PP

>> PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   4.2e+02     120     136 ..     117     143 ..      50     167 .. 0.58
   2 ?   11.9   3.4   3.6e-05      0.12      82     161 ..     368     457 ..     363     477 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.12
   PF06088.6 120 apv.eksssededdedd.........e 136
                 +pv ++++++ +ddedd          
  MMETSP0890-20130614|1214_1 117 TPVeSSADEAGSDDEDDhiskfsrgtL 143
                 233222222233333333333333331 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.6e-05
   PF06088.6  82 klnviLfnik.ptvlkkgsviFkivytn........kksansklflsapv..eksssededdeddededeaakiesnsdseesepssaKkq 161
                 ++++ +f ++ + ++k+ +  Fki+y+         +ks  s+ +++a++  ++ s++d+dd+dd d d++++ ++  +++++  s  K+q
  MMETSP0890-20130614|1214_1 368 QIRATIFPLDqNAIFKRMKRSFKIAYQAgintaeslEKSESSHPNQDAFAhdDHVSEDDSDDDDD-DFDDDDDESMHDNTQQDLFSEGKEQ 457
                 556656655414678999999*******9999999988888888999998744444444444444.5555555555533444444444443 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.7     0.019        64     118     170 ..     107     162 ..      73     172 .. 0.48
   2 ?   13.5   4.8   3.5e-06     0.012      85     200 ..     362     475 ..     340     488 .. 0.51

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.019
   PF02724.9 118 rdayealvemkeeeeeesdedsdseddeeeeessa...sekrksesdedeedddde 170
                 r+a+ a+++ + +e++ ++  sd+edd  ++ s+    ++kr+ ++d+d++  dd+
  MMETSP0890-20130614|1214_1 107 RSAVPASTTGTPVESSADEAGSDDEDDHISKFSRGtlsGHKRNGTHDDDDDYYDDD 162
                 33333333322233333333333333333333332111444444443333333332 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.5e-06
   PF02724.9  85 RPwnleNvfgasdqvivfddgdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeq...rkrsnesslakslrrrrrreree 200
                 RP+n + +++    ++ +d++ i + +++    + ay+a +++ e+ e+++ ++ +++  + ++  s+++++++++d d++dd++ +d+ ++    + ++++ ++ k   r+r r+  +
  MMETSP0890-20130614|1214_1 362 RPYNDAQIRA---TIFPLDQNAIFKRMKRS--FKIAYQAGINTAESLEKSESSHPNQDAFAHDDHVSEDDSDDDDDDFDDDDDESMHDNTQQDlfsEGKEQQPTTMKMNARQRHRMNAQ 475
                 6777776766...77778888888888777..677777777766655544444444443333444333333333333333333332222222100011111111122222222222222 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.0    0.0022       7.6      47     105 ..     419     479 ..     400     492 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0022
   PF05764.8  47 eefeeeeeeeeeeeDsdfddsedd...eeesddeeegekele.keekekkkkrkkkkaykepl 105
                 +++++e++ +++  D+dfdd++d+   +++++d   + ke +    k++ ++r +++a+k+++
  MMETSP0890-20130614|1214_1 419 DDHVSEDDSDDD--DDDFDDDDDEsmhDNTQQDLFSEGKEQQpTTMKMNARQRHRMNAQKQQT 479
                 456666555555..9********9998666666666666666744444444445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.41s 00:00:01.49 Elapsed: 00:00:01.70
# Mc/sec: 797.85
//
Query:       MMETSP0890-20130614|1217_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.008   15.3  13.7     0.0087   15.2   9.5    1.1  1  PF04502.8  Family of unknown function (DUF572)
  ------ inclusion threshold ------
      0.049   12.8   7.5      0.059   12.5   5.2    1.1  1  PF00580.16 UvrD/REP helicase N-terminal domain
       0.17   11.5  11.7       0.19   11.3   8.1    1.1  1  PF03105.14 SPX domain
        0.3   10.1  10.9       0.41    9.7   7.6    1.1  1  PF08690.5  GET complex subunit GET2
       0.71    8.7   6.5       0.95    8.3   4.5    1.1  1  PF09139.6  Mitochondrial matrix Mmp37
        2.6    7.6  20.0        3.4    7.3  13.9    1.1  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
        3.2    6.1  11.3        4.1    5.7   7.8    1.1  1  PF03430.8  Trans-activating transcriptional regulator
        3.3    5.8  11.9        3.9    5.5   8.2    1.1  1  PF01499.11 Herpesvirus UL25 family
        4.7    5.9  10.6        5.6    5.6   7.4    1.3  1  PF14362.1  Domain of unknown function (DUF4407)
        6.8    4.1  11.0        8.3    3.8   7.6    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein
        8.9    6.0  12.0         15    5.3   8.3    1.4  1  PF06217.7  GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   9.5     7e-06    0.0087     112     213 ..      63     163 ..      27     232 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7e-06
   PF04502.8 112 keaeeqverlekeeeeeeagdamkklEkrtads...kremevlerLeeLkelqsrkadvavesmLeal.rreekkeeeeeeeedeelikslslgleseedrrlakd 213
                 ++ e+ +e+++++++e+ea +     Ekr ++    +r+  + ++L++L++++++ +  ++++  +++ +r +k+ +  + +e+e + ++++++ e++e+++ ++d
  MMETSP0890-20130614|1217_1  63 ELGEARQEEVQRKKAEREAIE----AEKRKQEAerlERKRRARQQLDKLRAAKKK-KRQDTNKSIQSKpKRPKKQIQSTTSREEEPSAENIQEKIEEKEEEEELED 163
                 222333333333333333333....344444431114566788999999999998.55677777777757777777778888888899999999777777777666 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.2   4.7e-05     0.059     133     253 ..      66     216 ..      31     239 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.7e-05
                 HHHHHHHCS--HTTTTCCCCCCHHHHHHHCCCHCCCHHHHHHHHGG-SHHHHHHHHHHHTTSSTTHHTC--TS--HHHHHHHHHHHHHHHHHHHHTC...............................EECCHHHHHHHHHHHHSHHHHHHH CS
  PF00580.16 133 ellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakekqlspkelkkafekasdlqkkiaeflkeyqeqkkeena...............................lDfsdllhallelleeneelaeal 253
                 e+ +e +++++ +++ ++++k +++++ l ++r  + +  +l + k+++ + + + +++k  +pk++ +    +++++  ++++ ++++e+ +ee++                               +D++ ll ++ +  + ++ +a+a 
  MMETSP0890-20130614|1217_1  66 EARQEEVQRKKAEREAIEAEKRKQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQS-TTSREEEPSAENIQEKIEEKEEEEELedeslpispelnwfqdilvhkvprdptandeIDLDTLLTFINQEANPPQPIAQAT 216
                 4455666678888999999999999999999999999999999999999999999999999999999984.578888888999999999999999999999999999999999999999999999999888888888777555455555444 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.1   0.00015      0.19     101     194 ..      76     169 ..      45     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
  PF03105.14 101 dkElekvddFykekekeleerledLekqletlaerrtkksdeykarqeeqlyieaksffsdheamagpsnsvqakeksqekndqlqkqsndees 194
                 ++E e ++  ++++e+e  er ++ ++ql++l++ ++kk+++++++ + + ++ +k+ +s+ ++++ ps+++ +++ ++++++++ ++++ ++s
  MMETSP0890-20130614|1217_1  76 KAEREAIEAEKRKQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTSREEEPSAENIQEKIEEKEEEEELEDESLPIS 169
                 6899999999********************************9998888889999999999999999999998877777777776666655555 PP

>> PF08690.5  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.6   0.00033      0.41       4     129 ..      83     204 ..      77     231 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
   PF08690.5   4 eaEkrklLRErRqaKfskGkAseRLnkIlsQgssvklssksvldekkeketetaksaessdkddpeiqdileviatn..keeaeedqenidPevelfkqllkqqqqgngadnssede.stadllsmlks 129
                 eaEkrk   Er ++K     A + L+k+ +  +  +++++  +++k+++ +++ +s+ s  +++p  ++i+e i+++  +ee e+++  i Pe++ f+++l ++++ +    +++de  +  ll  +++
  MMETSP0890-20130614|1217_1  83 EAEKRKQEAERLERKR---RARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTS-REEEPSAENIQEKIEEKeeEEELEDESLPISPELNWFQDILVHKVPRD---PTANDEiDLDTLLTFINQ 204
                 6788888888777764...7889999999988888888866666666666666665555.69999********998833444455555699*************9775...333333134555655555 PP

>> PF09139.6  Mitochondrial matrix Mmp37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.5   0.00077      0.95     178     298 ..      32     154 ..      26     161 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00077
   PF09139.6 178 SYlGDlRmklvg.enpkKvknIVeknlenfrelYkplleeleevnlksk.kaeakaekkkvkleqdkdpekrlnllrsLPkelrsklykeveeklkkreaeevlkeiasde.elkkeveklikk 298
                  Y+ D+R+ ++g e +   + I +k l++ +el ++  ee+++++++++  + +k ++++++le++  + ++l++lr+  k+ r+  +k++++k k+  +++++++ + +e   ++++++ i++
  MMETSP0890-20130614|1217_1  32 GYTYDIRYVIGGsEKRVDAQYIRSKVLATRQELGEARQEEVQRKKAEREaIEAEKRKQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRP-KKQIQSTTSREEePSAENIQEKIEE 154
                 6999****999967777888999999999************99999999444777788899******************************9999444.4444444443331557778777765 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  13.9    0.0027       3.4      68     194 ..      44     169 ..      35     194 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0027
   PF05279.6  68 kekstsessvpeeeaevvaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekskepve 194
                 +ek ++ + +  ++  + +e  e   ee +++k+e e+ E +k+  +e++  e++ + +++  +l   kk++++d++++ +++    +k+ +  + ++ee   e+ +++++ek +eee e+++ p+ 
  MMETSP0890-20130614|1217_1  44 SEKRVDAQYIRSKVLATRQELGEARQEEVQRKKAEREAIEAEKRK-QEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTSREEEPSAENIQEKIEEKEEEEELEDESLPIS 169
                 556666655555666666666666666666667776666655544.333333333333333334444455555555555544444444444445667777788888888899999999888888765 PP

>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.8    0.0033       4.1     107     209 ..      67     170 ..      38     190 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0033
   PF03430.8 107 araeslaeslselkavtvskrkgseldsdvdesdsskG..kkkvkKpKkRekykkeviqskeklskeekyateictvaptdeiakyllkDpnkrykevelkpqhp 209
                 ar e+     +e +a+++ krk  e++ +  +  + +   k +  K KkR+ ++k++ +++++ +k+++ +t   +  ++++i++++ +  +    e+e  p  p
  MMETSP0890-20130614|1217_1  67 ARQEEVQRKKAEREAIEAEKRK-QEAERLERKRRARQQldKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTSREEEPSAENIQEKIEEKEEEEELEDESLPISP 170
                 1111222222222222222222.2344333333333333267899***********9999988899999999999999999***999988555555555555555 PP

>> PF01499.11  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.2    0.0031       3.9      23     114 ..      70     157 ..      57     199 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0031
  PF01499.11  23 eesleetrerfalrlrkeaeevkleklkkralkaeLdnleaksqtrseeiearLreieaeleevadaldlletaaaaaeeadaaesdataae 114
                 ee+ ++  er a +++k+ +++ ++  +kr +++ Ld+l+a ++++ ++ ++ ++   ++ +++ ++ ++ e++++a++ +   e+    +e
  MMETSP0890-20130614|1217_1  70 EEVQRKKAEREAIEAEKR-KQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTSREEEPSAENIQEKIEE---KEE 157
                 445555555555555555.3444444567799***********************9999999999999998877777663333333...222 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.4    0.0045       5.6     112     196 ..      62     157 ..      46     233 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0045
   PF14362.1 112 telkekqqeeqaaaqaqvaa...slsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGt........ggtgvaGkGpvykekkealdaaqa 196
                 +el e +qee++  +a+++a     ++++a++ ++  +++++ld+++a+ +++++ +++ ++ +        ++t    + p++++ +e+ +++++
  MMETSP0890-20130614|1217_1  62 QELGEARQEEVQRKKAEREAieaEKRKQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKpkrpkkqiQSTTSREEEPSAENIQEKIEEKEE 157
                 444455555554444444444434444444444444555555555555555555555555555555555555444444444555555555554443 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   7.6    0.0067       8.3     601     702 ..      62     163 ..      39     188 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0067
   PF12722.2 601 lsiskelkeksnqkkkk.eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdreke 702
                 ++ +++ +e+ ++kk + ea + ++ ++e +  +++ r +++  + r a++++ ++ +ks+++++++ +++ +++ts++++++++n  ++++e+ ee+++ ++
  MMETSP0890-20130614|1217_1  62 QELGEARQEEVQRKKAErEAIEAEKRKQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTSREEEPSAEN-IQEKIEEKEEEEELED 163
                 33333333333333332344444444444444455555555556666777777778888888888888888888888888777666.4444444444444333 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.3     0.012        15     112     191 ..      72     156 ..      38     178 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
   PF06217.7 112 lkhpqledsave....lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekks 191
                 +++++ e +a+e     +e e le +   +++ ++ +++kkkkrq ++k  ++k+k++kk+ ++++++++++sa+  + k e k+
  MMETSP0890-20130614|1217_1  72 VQRKKAEREAIEaekrKQEAERLERKRRARQQLDKLRAAKKKKRQDTNKSIQSKPKRPKKQIQSTTSREEEPSAEnIQEKIEEKE 156
                 2222222222221101222223333333333333334444444555555555555566665555544444444443445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2247  (0.16435); expected 273.4 (0.02)
Passed bias filter:                      735  (0.0537595); expected 273.4 (0.02)
Passed Vit filter:                       161  (0.0117759); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:01.15
# Mc/sec: 506.13
//
Query:       MMETSP0890-20130614|1223_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-51  174.8   0.0    9.1e-51  172.3   0.0    2.0  1  PF00069.20 Protein kinase domain
    1.1e-25   90.1   0.0    2.1e-23   82.6   0.0    2.2  2  PF07714.12 Protein tyrosine kinase
    4.5e-15   53.6   4.1    3.2e-05   22.8   0.3    3.6  3  PF00036.27 EF hand
    6.5e-14   51.8   0.0    1.2e-13   51.0   0.0    1.5  1  PF00169.24 PH domain
    9.1e-14   51.2   0.6    6.5e-08   32.4   0.1    2.7  2  PF13499.1  EF-hand domain pair
    3.2e-11   41.9   1.4     0.0027   17.3   0.0    3.7  3  PF13405.1  EF-hand domain
    4.7e-11   41.3   2.9     0.0014   17.7   0.0    3.5  3  PF13202.1  EF hand
    2.2e-08   33.4   6.2    0.00052   19.4   0.1    3.4  3  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.012   14.6   0.1       0.02   13.8   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
      0.012   15.5   1.0          5    7.0   0.1    3.1  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
      0.082   12.5   0.2          2    8.0   0.1    2.5  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
      0.083   12.4   0.4       0.32   10.5   0.1    1.8  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0     8e-54   9.1e-51       2     259 ..     464     756 ..     463     757 .. 0.93

  Alignments for each domain:
  == domain 1    score: 172.3 bits;  conditional E-value: 8e-54
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH................................HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH....HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHH.HHHHHT-SSGGGS--HHHHHT.SGG CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr................................ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk....kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkd.likkllekdpakRltaeeilk.hpw 259
                  ++++lG G+f+   ka++kkt+ +vA+K ++k+++  ++  t +                                 E++i++  +H++++ ll++fe++++++lv+ ++ + dl ++l+    ++ + +e+++  ++  i+e+++ylH++giiHrDLKp+NiLl++ +++   ++aDF +++   k++ + ++  g+ eYmAPEv lk+ +++ ++D+W++Gvi   +l+ k pf g+   ++ e+i +il+ ++  d+++s+ + ++++d ++ ++++ d++kR+ta+++l+ hpw
  MMETSP0890-20130614|1223_1 464 DFEDELGTGRFAIARKAIDKKTKARVAIKSIEKRHSLLSEISTPQAqprelqpnsdpdqppvildpaqsknerdmfrrEISIMRLAQHKYVLPLLSIFEDRSHVHLVMPLMSQ-DLGHYLTkryqDDDPCTEKDALICMPVIIEAVAYLHHMGIIHRDLKPDNILLEDPDDItrlRLADFSISQI-LKPGDTINKPAGSIEYMAPEVFLKNIGASFPADIWAVGVIGLIVLFFKQPFAGD---SKGETITNILEHEIIPDYDWSTCT-STCRDlFLIQMIHADASKRITAQQALEsHPW 756
                 67789*****************************9887766555446889*************************************************************99.9999999888889999*************************************99999999********86.******************************************************...9***************99988775.566652799***************9973666 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0075       8.6       3      40 ..     465     498 ..     463     509 .. 0.83
   2 !   82.6   0.0   1.8e-26   2.1e-23      38     254 ..     529     749 ..     525     753 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0075
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTS CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesa 40 
                 ++++lG G+f+   +++ k    k++ +Va+K++++++
  MMETSP0890-20130614|1223_1 465 FEDELGTGRFAIARKAIDK----KTKARVAIKSIEKRH 498
                 7899*******99999988....999********6543 PP

  == domain 2    score: 82.6 bits;  conditional E-value: 1.8e-26
                 TTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS--..-TTSBHHHHHH.HHHHT-SSGGGS--HHH CS
  PF07714.12  38 esaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlek..pekcpeelyel.mkqCweeepeeRptfke 254
                   ++++e+++f +e++im+  +h+ ++ ll ++ +++++ +v+ ++++ dL ++L+k+  +++ +t kd l ++  i ++++yL+++ ++HrdL   N+Lle+    +  +++Df +++ ++  d+ +   +   ++++mapE++ ++   +  +D+W+ Gv+   ++   ++p++g s+ e+++++ e++ ++    ++c+++  +l + q +++++++R t ++
  MMETSP0890-20130614|1223_1 529 PAQSKNERDMFRREISIMRLAQHKYVLPLLSIFEDRSHVHLVMPLMSQ-DLGHYLTKRyqDDDPCTEKDALICMPVIIEAVAYLHHMGIIHRDLKPDNILLEDpddITRLRLADFSISQILKPGDTIN---KPAGSIEYMAPEVFLKNIgASFPADIWAVGVIGLIVLF-FKQPFAGDSKGETITNILEHEIIPDydWSTCTSTCRDLfLIQMIHADASKRITAQQ 749
                 5677888999************************************86.9*****999767888999999999999**************************943334789********996655554...45689********98877699**********9775544.679****9888888888777766651146899999998789999999999999877 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.3e-07   0.00014       4      27 ..      19      42 ..      18      44 .. 0.92
   2 !    9.7   0.0   0.00044       0.5       2      28 ..      53      79 ..      52      80 .. 0.88
   3 !   22.8   0.3   2.8e-08   3.2e-05       2      28 ..     184     210 ..     183     211 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.3e-07
                HHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  4 eaFkefDkDgdGkIsfeEfkealk 27
                ++Fk fD+ ++G ++feEf++ l+
  MMETSP0890-20130614|1223_1 19 QVFKAFDRKKNGVLDFEEFLSGLA 42
                68******************9886 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00044
                HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                +k +F+++D  gdG++ ++E++++l++
  MMETSP0890-20130614|1223_1 53 VKFLFEIYDLKGDGFVWKSELRSLLNH 79
                7889************99999998865 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 2.8e-08
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 ++eaF+  D ++dGk++f Efk++++k
  MMETSP0890-20130614|1223_1 184 VEEAFERCDINNDGKLEFPEFKNVIEK 210
                 79********************99876 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.1e-16   1.2e-13       2     102 ..     351     446 ..     350     448 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 1.1e-16
                 SBEEEEEEEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT.....CEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24   2 ikeGyllkksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv.....esyllsaeseeerkrWvqalknl 102
                 ++eGyl k + +  +   ryf L +++L+yf +++   + +pkg i l +c ++k +++       s++ f+i++ d+     +++ l+a+se er +W++al  +
  MMETSP0890-20130614|1223_1 351 HHEGYLQKIGAKTNNLFTRYFALVGKCLYYFHKKT---DTKPKGLIFLGGCHIEKIKNN-------SQYGFRIVHLDSerlgqKQHTLYATSETERDAWCEALLVA 446
                 79********************************9...8*******************8.......9***********************************9655 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   5.7e-11   6.5e-08       4      64 ..      19      75 ..      15      77 .. 0.93
   2 !   16.3   0.0   6.3e-06    0.0072      33      64 ..     175     206 ..     140     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 5.7e-11
   PF13499.1  4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64
                ++Fk++D+ ++g ld ee+l  l ++     +++++e + ++f+ +D+ gdG++  +E+++
  MMETSP0890-20130614|1223_1 19 QVFKAFDRKKNGVLDFEEFLSGLARSA----RGSKEEKVKFLFEIYDLKGDGFVWKSELRS 75
                68*************************....*********************998888766 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 6.3e-06
   PF13499.1  33 lsdeevrevldyifkelDkngdGvlsfeEflq 64 
                 l ++  ++++++ f++ D n+dG+l f+Ef +
  MMETSP0890-20130614|1223_1 175 LDEYTNDNMVEEAFERCDINNDGKLEFPEFKN 206
                 3377778889999*****************86 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.4e-06    0.0027       4      27 ..      19      42 ..      18      48 .. 0.89
   2 !    8.2   0.0     0.002       2.2       3      27 ..      54      78 ..      52      86 .. 0.88
   3 !   13.2   0.1   4.9e-05     0.056       3      27 ..     185     209 ..     183     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.4e-06
                ---GCC-------B---HHHHHHH CS
   PF13405.1  4 eaFklfDkdgdGkidaeELrdaLr 27
                ++Fk+fD+ ++G +d+eE+++ L 
  MMETSP0890-20130614|1223_1 19 QVFKAFDRKKNGVLDFEEFLSGLA 42
                58*****************99886 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.002
                H---GCC-------B---HHHHHHH CS
   PF13405.1  3 reaFklfDkdgdGkidaeELrdaLr 27
                + +F+++D  gdG++ ++ELr++L+
  MMETSP0890-20130614|1223_1 54 KFLFEIYDLKGDGFVWKSELRSLLN 78
                679************9999999997 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 4.9e-05
                 H---GCC-------B---HHHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                 +eaF+  D ++dGk+++ E+++++ 
  MMETSP0890-20130614|1223_1 185 EEAFERCDINNDGKLEFPEFKNVIE 209
                 69*******************9987 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.2e-05     0.014       4      21 ..      20      37 ..      18      42 .. 0.90
   2 !    7.5   0.0    0.0021       2.4       4      24 ..      56      76 ..      53      77 .. 0.87
   3 !   17.7   0.0   1.2e-06    0.0014       2      24 ..     185     207 ..     184     208 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
                HHHHH--S----B-HHHH CS
   PF13202.1  4 tFrafDlNgDGkIsreEL 21
                +F+afD  + G +++eE+
  MMETSP0890-20130614|1223_1 20 VFKAFDRKKNGVLDFEEF 37
                7****************9 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0021
                HHHHH--S----B-HHHHHHH CS
   PF13202.1  4 tFrafDlNgDGkIsreELkrl 24
                +F+ +Dl gDG++ ++EL+ l
  MMETSP0890-20130614|1223_1 56 LFEIYDLKGDGFVWKSELRSL 76
                6***********999999876 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 1.2e-06
                 HHHHHHH--S----B-HHHHHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreELkrl 24 
                 +++F++ D N+DGk+ + E+k++
  MMETSP0890-20130614|1223_1 185 EEAFERCDINNDGKLEFPEFKNV 207
                 567*****************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   4.5e-07   0.00052      29      53 ..      19      43 ..      18      44 .. 0.91
   2 ?    3.7   0.0     0.036        41      23      51 ..      48      77 ..      41      79 .. 0.79
   3 !   12.0   0.2   9.1e-05       0.1      23      50 ..     179     207 ..     170     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.5e-07
   PF13833.1 29 ilfrefDtdgdGkisfeEFcvller 53
                 +f++fD++++G ++feEF++ l+r
  MMETSP0890-20130614|1223_1 19 QVFKAFDRKKNGVLDFEEFLSGLAR 43
                57******************99876 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.036
   PF13833.1 23 seee.vdilfrefDtdgdGkisfeEFcvll 51
                s+ee v  lf   D++gdG + + E  +ll
  MMETSP0890-20130614|1223_1 48 SKEEkVKFLFEIYDLKGDGFVWKSELRSLL 77
                66666**************88777766665 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 9.1e-05
   PF13833.1  23 seee.vdilfrefDtdgdGkisfeEFcvl 50 
                 +++  v++ f   D+++dGk+ f EF+++
  MMETSP0890-20130614|1223_1 179 TNDNmVEEAFERCDINNDGKLEFPEFKNV 207
                 566669999*****************986 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05      0.02     127     170 ..     604     647 ..     574     656 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-05
   PF06293.9 127 vGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                 + +++a +h  g+ H+dl + nill++ ++  ++ l D+  ++ 
  MMETSP0890-20130614|1223_1 604 IIEAVAYLHHMGIIHRDLKPDNILLEDPDDITRLRLADFSISQI 647
                 5578999**********************999******987765 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.012        14      49      81 ..      46      78 ..      18      85 .. 0.82
   2 ?    7.0   0.1    0.0044         5      88     111 ..     182     205 ..     174     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
   PF10591.4 49 skeckeaveWkFnqlDtnkdkvlsksElaplra 81
                  + +e+v++ F+  D + d+++ ksEl++l +
  MMETSP0890-20130614|1223_1 46 RGSKEEKVKFLFEIYDLKGDGFVWKSELRSLLN 78
                5566789**********************9866 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0044
   PF10591.4  88 hCikeffksCDadkdkkisleEWc 111
                 + ++e f++CD+++d+k+++ E+ 
  MMETSP0890-20130614|1223_1 182 NMVEEAFERCDINNDGKLEFPEFK 205
                 5577889**************996 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.21   2.3e+02      48      66 ..      20      38 ..      16      42 .. 0.82
   2 ?    8.0   0.1    0.0018         2      41      66 ..     180     205 ..     166     223 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.21
   PF12763.2 48 iwdladidedgkldfeefc 66
                +++  d  ++g ldfeef 
  MMETSP0890-20130614|1223_1 20 VFKAFDRKKNGVLDFEEFL 38
                6666788899********6 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0018
   PF12763.2  41 eedklekiwdladidedgkldfeefc 66 
                 +++ +e+ ++ +di++dgkl+f ef 
  MMETSP0890-20130614|1223_1 180 NDNMVEEAFERCDINNDGKLEFPEFK 205
                 56778899999*************96 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         1   1.2e+03      34      86 ..     536     590 ..     519     614 .. 0.73
   2 ?   10.5   0.1   0.00028      0.32     165     182 ..     613     631 ..     582     637 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT....CS CS
  PF01636.18  34 aeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler....kl 86 
                 +  +rre  ++rl a++  +v  +l + +d+ +  l++ l++   g+ l+      +
  MMETSP0890-20130614|1223_1 536 RDMFRREISIMRL-AQH-KYVLPLLSIFEDRSHVHLVMPLMSQDLGHYLTKryqdDD 590
                 4556777777777.777.447777777779999999999*99999999998644434 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00028
                 --EEB-SS-SGGGEEEE.T CS
  PF01636.18 165 ppvllHgDlhpgNllvd.p 182
                 + +++H+Dl+p+N+l+  p
  MMETSP0890-20130614|1223_1 613 HMGIIHRDLKPDNILLEdP 631
                 489*************932 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:01.25
# Mc/sec: 1539.42
//
Query:       MMETSP0890-20130614|1230_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-15   54.4   0.0    8.5e-15   54.3   0.0    1.0  1  PF00166.16 Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> PF00166.16  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   6.2e-19   8.5e-15      35      92 ..       2      59 ..       1      60 [. 0.97

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 6.2e-19
  PF00166.16 35 lqGeVvaVGeGarnekgekvpeevkvGdkVllpkysGtkvkvegkeyvvlkekdIlav 92
                +++eV+a G+Ga++++g+ +p+ev vGdkVllp+y++t++k ++ ey +l+ +dIl++
  MMETSP0890-20130614|1230_1  2 NEAEVIACGPGAKDSEGKLIPLEVAVGDKVLLPDYGATMIKLDDDEYHLLRGSDILGK 59
                79******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 208.83
//
Query:       MMETSP0890-20130614|1239_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-28   95.3  39.6    3.5e-08   32.7   0.4    8.3  9  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   4.7e-06     0.064       4      16 ..      14      26 ..      11      37 .. 0.89
   2 ?   -3.3   0.7      0.51     7e+03      22      24 ..      52      54 ..      47      58 .. 0.71
   3 !    7.7   0.3   0.00017       2.4       2      24 ..      69      91 ..      68      95 .. 0.92
   4 !   32.7   0.4   2.6e-12   3.5e-08       3      25 ..     103     125 ..     102     127 .. 0.95
   5 !   25.1   1.0     6e-10   8.2e-06       3      30 .]     142     170 ..     140     170 .. 0.90
   6 !   17.8   0.1   1.2e-07    0.0016       3      29 ..     181     210 ..     179     211 .. 0.83
   7 ?    0.1   0.0     0.043   5.9e+02       3      14 ..     222     233 ..     221     234 .. 0.88
   8 ?    2.1   0.0      0.01   1.4e+02      16      27 ..     252     263 ..     251     264 .. 0.86
   9 !   20.8   0.1   1.4e-08   0.00019       1      22 [.     275     296 ..     275     297 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-06
                EE-----EEEE-. CS
   PF13540.1  4 vsaGgyHtcaLts 16
                vsaG +HtcaL++
  MMETSP0890-20130614|1239_1 14 VSAGHFHTCALRR 26
                9**********96 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.51
                EE- CS
   PF13540.1 22 cWG 24
                cWG
  MMETSP0890-20130614|1239_1 52 CWG 54
                998 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00017
                -EEE-----EEEE-.---EEEE- CS
   PF13540.1  2 vsvsaGgyHtcaLtsdGaVlcWG 24
                +++s+G   +c+L+ +G ++cWG
  MMETSP0890-20130614|1239_1 69 IQISSGHLQSCGLMVNGFIRCWG 91
                699999999*************9 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 2.6e-12
                 EEE-----EEEE-.---EEEE-- CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVlcWGs 25 
                 +vs+G+ H+c+Lt dG+ +cWG 
  MMETSP0890-20130614|1239_1 103 QVSCGNLHSCGLTKDGEARCWGE 125
                 8*********************6 PP

  == domain 5    score: 25.1 bits;  conditional E-value: 6e-10
                 EEE-----EEEE-..---EEEE---TTST CS
   PF13540.1   3 svsaGgyHtcaLts.dGaVlcWGsNssGQ 30 
                 ++saG +++c++ s + +V+cWGsN +GQ
  MMETSP0890-20130614|1239_1 142 QLSAGLDFSCGIYSqNRTVHCWGSNLFGQ 170
                 89***********83666**********9 PP

  == domain 6    score: 17.8 bits;  conditional E-value: 1.2e-07
                 EEE..-----EEEE-..---EEEE---TTS CS
   PF13540.1   3 svs..aGgyHtcaLt.sdGaVlcWGsNssG 29 
                 +++  + + H+c++t  d  ++cWG+N+ G
  MMETSP0890-20130614|1239_1 181 QIAasSSSAHACGITwPDKNLRCWGQNNKG 210
                 66643799*******77888********98 PP

  == domain 7    score: 0.1 bits;  conditional E-value: 0.043
                 EEE-----EEEE CS
   PF13540.1   3 svsaGgyHtcaL 14 
                 +++ G++ tc++
  MMETSP0890-20130614|1239_1 222 QLALGYRTTCVI 233
                 7899******97 PP

  == domain 8    score: 2.1 bits;  conditional E-value: 0.01
                 .---EEEE---T CS
   PF13540.1  16 sdGaVlcWGsNs 27 
                 s+G++ c+G N 
  MMETSP0890-20130614|1239_1 252 SGGQIKCFGVNK 263
                 89*******996 PP

  == domain 9    score: 20.8 bits;  conditional E-value: 1.4e-08
                 --EEE-----EEEE-.---EEE CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlc 22 
                 ++++s G++H c+L+sdGaV c
  MMETSP0890-20130614|1239_1 275 WIQISLGRDHLCGLLSDGAVKC 296
                 68******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:01.08
# Mc/sec: 714.47
//
Query:       MMETSP0890-20130614|1235_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-24   86.2   0.0    9.9e-14   51.6   0.0    2.4  2  PF00005.22 ABC transporter
    8.4e-12   45.5   0.0    0.00043   20.2   0.0    3.6  4  PF13304.1  AAA domain
      5e-11   42.1   0.3    1.4e-06   27.5   0.1    3.0  2  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00021   21.3   0.0    0.00056   19.9   0.0    1.7  1  PF13401.1  AAA domain
     0.0011   19.2   0.0     0.0024   18.1   0.0    1.6  1  PF13476.1  AAA domain
     0.0012   17.8   0.0       0.62    8.9   0.0    3.1  3  PF13175.1  AAA ATPase domain
     0.0014   18.9   0.0     0.0035   17.6   0.0    1.7  1  PF13191.1  AAA ATPase domain
     0.0037   16.6   0.0     0.0067   15.7   0.0    1.4  1  PF00448.17 SRP54-type protein, GTPase domain
      0.004   16.6   0.0      0.011   15.2   0.0    1.6  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0053   16.2   0.0     0.0098   15.3   0.0    1.4  1  PF05729.7  NACHT domain
     0.0062   16.1   0.0      0.019   14.5   0.0    1.9  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0086   15.4   0.0      0.021   14.2   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
     0.0097   15.6   0.0      0.019   14.7   0.0    1.5  1  PF13671.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.028   14.0   0.0    1.6  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.015   14.9   0.0       0.05   13.2   0.0    1.9  1  PF13245.1  Part of AAA domain
       0.02   15.2   0.0      0.053   13.8   0.0    1.7  1  PF08477.8  Miro-like protein
      0.023   14.8   0.2      0.063   13.3   0.0    1.9  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.023   14.1   0.0      0.052   13.0   0.0    1.5  1  PF13604.1  AAA domain
      0.044   13.1   0.0      0.099   11.9   0.0    1.5  1  PF05272.6  Virulence-associated protein E
      0.056   12.2   0.0      0.086   11.6   0.0    1.2  1  PF00437.15 Type II/IV secretion system protein
      0.068   12.2   0.0       0.13   11.3   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
      0.092   12.5   0.0       0.17   11.6   0.0    1.5  1  PF13521.1  AAA domain
       0.16   11.1   0.5       0.54    9.4   0.0    2.1  2  PF13481.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.3e-10   7.9e-08      66     117 ..       7      57 ..       1      58 [. 0.91
   2 !   51.6   0.0   1.7e-16   9.9e-14       1     117 [.     241     358 ..     241     359 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  66 dkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPt 117
                 ++  e+v +++ l   +d+ +v+ LSgG+ qr a+  +++++++++++DEP 
  MMETSP0890-20130614|1235_1   7 RDNQEQVRKALDLGRVVDR-PVHLLSGGELQRFAIGVCMVQNADVYMFDEPS 57 
                 6677889999999999999.*******************************6 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 1.7e-16
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--..-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk..tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPt 117
                 +T +++l+g+l+ +e     + +d ++ +++++ +l i+y pq+     + tvr+ l  + ++      + i +v++ +++d  +d+ +v++LSgG+ qrva A al k ++l+l+DEP 
  MMETSP0890-20130614|1235_1 241 TTFIRMLAGLLSSDERAAAEAaEDTEKAQQYSMPSLTISYKPQKIAPKFQGTVRQLLHKKIRD-AyvHPQFISDVMKPMKIDPIIDQ-EVQNLSGGELQRVAMALALGKPADLYLIDEPS 358
                 79**********9988888886789899999999999*******9988899**8888654444.369********************.*******************************7 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00071      0.42     227     274 ..      20      64 ..       7      85 .. 0.83
   2 !   20.2   0.0   7.2e-07   0.00043       2      47 ..     230     276 ..     229     291 .. 0.71
   3 !   10.5   0.0   0.00063      0.37     234     282 ..     328     373 ..     285     385 .. 0.70
   4 ?   -2.9   0.1       7.7   4.6e+03      59      82 ..     431     453 ..     426     468 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00071
   PF13304.1 227 gdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkl 274
                 g+ ++ p + lS G+++ +a+     ++    +v+++DEp ++L+ k 
  MMETSP0890-20130614|1235_1  20 GRVVDRPVHLLSGGELQRFAIGVCMVQNA---DVYMFDEPSSYLDVKQ 64 
                 56678999******************999...************9864 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 7.2e-07
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfr.delvlglnldrslnvniekipfl 47 
                  v+ G+Ng+GK+++++ l++l++ de++  +  ++  + +   +p l
  MMETSP0890-20130614|1235_1 230 VVLLGENGTGKTTFIRMLAGLLSsDERAAAEAAEDTEKAQQYSMPSL 276
                 69*******************99855555555555444444444444 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00063
   PF13304.1 234 lsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliell 282
                   +lS G+++  a+++al       +++liDEp ++L+ +     ++++
  MMETSP0890-20130614|1235_1 328 VQNLSGGELQRVAMALALGKPA---DLYLIDEPSAYLDSEQRIVCAKVI 373
                 4456******988888888888...************997765555555 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 7.7
   PF13304.1  59 feielflsdgiryrygfeigksqi 82 
                 +ei  f++d ++yr  ++ ++s  
  MMETSP0890-20130614|1235_1 431 LEIT-FRRDPTNYRPRINKKFSVK 453
                 6777.8888888888888777766 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0006      0.35     136     188 ..      29      77 ..       9      96 .. 0.84
   2 !   27.5   0.1   2.4e-09   1.4e-06      23     192 ..     226     385 ..     219     402 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0006
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksk 188
                 lLSgGe +  a+ +     +v+ a +y++De  + LD k++   a+++++  +
  MMETSP0890-20130614|1235_1  29 LLSGGELQRFAIGV----CMVQNADVYMFDEPSSYLDVKQRLVAAQVIRSLVD 77 
                 68999988666655....58999*************************98764 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 2.4e-09
                 --SEEEE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT......G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH...HH-BTBEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx RF
  PF02463.14  23 sksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk...eksknaQf 192
                 ++++ +++G+NG GK+ ++  +  +L+ ++     +e ++d    +++ ++++  +++i ++ ++ +    + + ++++ + +k      i +  v+ + ++++++ ++i++       +LSgGe + va+aL +     kpa lyl+De  a LD +++   a+++k    +sk++ f
  MMETSP0890-20130614|1235_1 226 DSEIVVLLGENGTGKTTFIRMLAGLLSSDER--AAAEAAED----TEKAQQYSMPSLTISYKPQKIA---PKFQGTVRQLLHKK------IRDAYVHPQFISDVMKPMKIDPIidqevqNLSGGELQRVAMALAL----GKPADLYLIDEPSAYLDSEQRIVCAKVIKrfiMHSKKTAF 385
                 56788999************99999985433..33333333....4667777888888877655555...44445554444444......445555555555555555555433344449*****9999998875....59**************************944434444444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.4e-07   0.00056       4     103 ..     227     335 ..     224     359 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9.4e-07
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae.....karvv.fveapast...spkellqkllsalglpakgrltteell.ealqealrrrrtrlliiDEaqrLseea 103
                 + i+v+ Ge G+GKTt++r+la  l   + aa      + + +  +  p+ t   +p++++ k+ + + + ++++ + + +  + + ++++  + + +i  E+q+Ls   
  MMETSP0890-20130614|1235_1 227 SEIVVLLGENGTGKTTFIRMLAGLLSSDERAAAeaaedT-EKAqQYSMPSLTisyKPQKIAPKFQGTVRQLLHKKIRDAYVHpQFISDVMKPMKIDPIIDQEVQNLSGGE 335
                 689*******************99885554444566642.2223555555555555555555555555555555444444444444444444444777777777776444 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     4e-06    0.0024      17      45 ..     224     253 ..     211     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4e-06
   PF13476.1  17 F.skgltlItGpNGsGKTTildAiclaLyg 45 
                 F ++ ++++ G+NG+GKTT++  +  +L  
  MMETSP0890-20130614|1235_1 224 FtDSEIVVLLGENGTGKTTFIRMLAGLLSS 253
                 456789***************999988865 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.25   1.5e+02     371     399 ..      47      77 ..      43      89 .. 0.74
   2 !    8.9   0.0     0.001      0.62      22      43 ..     227     254 ..     207     302 .. 0.75
   3 ?    3.8   0.0     0.036        21     372     399 ..     351     378 ..     325     392 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.25
   PF13175.1 371 n..IlliDEPeahlhptlqkellefLkelak 399
                 n  ++++DEP  +l+++ +  +   + +l++
  MMETSP0890-20130614|1235_1  47 NadVYMFDEPSSYLDVKQRLVAAQVIRSLVD 77 
                 2349***********9977666666655555 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.001
   PF13175.1  22 eslnviiGeNgsGKttILeal......e 43 
                 + + v+ GeNg+GKtt +  l      +
  MMETSP0890-20130614|1235_1 227 SEIVVLLGENGTGKTTFIRMLagllssD 254
                 4899*************99995443331 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.036
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelak 399
                  +liDEP a+l++  +    + +k ++ 
  MMETSP0890-20130614|1235_1 351 LYLIDEPSAYLDSEQRIVCAKVIKRFIM 378
                 8**********99876666666666655 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.8e-06    0.0035      23      86 ..     223     300 ..     211     355 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.8e-06
   PF13191.1  23 sp....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn........lpysaiiqa..lrellrqlltel 86 
                 +     +++++G+ G+GK++ +r la  +  ++ + a++  d  ++         ++y +   a  ++  +rqll + 
  MMETSP0890-20130614|1235_1 223 TFtdseIVVLLGENGTGKTTFIRMLAGLLSSDERAAAEAAEDTEKAQqysmpsltISYKPQKIApkFQGTVRQLLHKK 300
                 4456669*****************888887664444443333333336788899888888888899888888887665 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05    0.0067       2      42 ..     228     268 ..     227     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.1e-05
                 EEEEEE-------TTTHHHHHHHHHHT---EEEEE--TSSH CS
  PF00448.17   2 nvillvGlqGaGKTTtlaKLAallkkegkkvllvaaDtfRa 42 
                 ++++l+G +G+GKTT +  LA ll+++++  + +a Dt +a
  MMETSP0890-20130614|1235_1 228 EIVVLLGENGTGKTTFIRMLAGLLSSDERAAAEAAEDTEKA 268
                 5799*************************999999999765 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05     0.011      13      41 ..     225     253 ..     220     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.8e-05
  PF02367.12  13 kagdvvlLsGdlGaGKTtlvkglakglgv 41 
                 + +++v+L G+ G+GKTt+++ la  l+ 
  MMETSP0890-20130614|1235_1 225 TDSEIVVLLGENGTGKTTFIRMLAGLLSS 253
                 5789*****************99877754 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05    0.0098       2      28 ..     229     255 ..     228     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-05
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawakgk 28 
                 +v+l Ge+G GKTt++++la ++ +++
  MMETSP0890-20130614|1235_1 229 IVVLLGENGTGKTTFIRMLAGLLSSDE 255
                 699****************99887765 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.4   5.6e+03      27      57 ..      48      78 ..      43      81 .. 0.74
   2 !   14.5   0.0   3.2e-05     0.019       2      39 ..     230     268 ..     229     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 9.4
                EEEEE--TT--HHHH---B--.........- CS
   PF07728.9 27 veyvqltrdtteedlkgrreiangttslvds 57
                  ++++ +  ++ d+k+r+  a+  +slvd+
  MMETSP0890-20130614|1235_1 48 ADVYMFDEPSSYLDVKQRLVAAQVIRSLVDG 78
                5567777777888888888888888888887 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.2e-05
                 EEEE------HHHHHHHGGGGB.S--EEEEE--TT--HH CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal.nreveyvqltrdttee 39 
                 v+L+G+ GtgK+++++ la +l  +e       +dt+++
  MMETSP0890-20130614|1235_1 230 VVLLGENGTGKTTFIRMLAGLLsSDERAAAEAAEDTEKA 268
                 89********************98888877777777776 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.6e-05     0.021      23      59 ..     227     262 ..     220     266 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.6e-05
   PF13555.1  23 gkntlltGasGsGKSTllDAiqtlLvpakkvafNkaa 59 
                 ++ ++l G++G GK+T++  ++ lL +++ +a  +aa
  MMETSP0890-20130614|1235_1 227 SEIVVLLGENGTGKTTFIRMLAGLLSSDE-RAAAEAA 262
                 45799*************99999999888.5555555 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.3e-05     0.019       1      64 [.     229     298 ..     229     309 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.3e-05
   PF13671.1   1 lvllvGlpGsGKstlaerllkklg.....yvrlsqdtlrkrlfgtdqqsktd.ytrvlkrlyqilnklar 64 
                 +v+l G  G+GK+t++++l+  l      +    +dt++ + + + + ++++ +++ + ++ +++++l+ 
  MMETSP0890-20130614|1235_1 229 IVVLLGENGTGKTTFIRMLAGLLSsderaAAEAAEDTEKAQQYSMPSLTISYkPQKIAPKFQGTVRQLLH 298
                 5899***************976666444444455555555554433333333123344444444444444 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.6e-05     0.028       2      30 ..     229     257 ..     228     268 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.6e-05
                 EEEEE-------HHHHHHHHHHHHH---- CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyr 30 
                 iv++ G  ++GKTt+i++l+  l+++++ 
  MMETSP0890-20130614|1235_1 229 IVVLLGENGTGKTTFIRMLAGLLSSDERA 257
                 78999***************999988776 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.4e-05      0.05      10      57 ..     227     260 ..     222     278 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.4e-05
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakr 57 
                 + ++v+ G  GtGKT t ++  a ll             ++  raa++
  MMETSP0890-20130614|1235_1 227 SEIVVLLGENGTGKT-TFIRMLAGLL-------------SSDERAAAE 260
                 6799***********.9999999999.............344444444 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     9e-05     0.053       2      37 ..     230     265 ..     229     300 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9e-05
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdt 37 
                 vv++G+ g+GK+++++ l+g   ++     e  +dt
  MMETSP0890-20130614|1235_1 230 VVLLGENGTGKTTFIRMLAGLLSSDERAAAEAAEDT 265
                 799****************98887555444444444 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00011     0.063       1      25 [.     230     254 ..     230     312 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00011
                 EEEE-------HHHHHHHHHHCTHE CS
  PF00004.24   1 vllyGppGtGKTllakavakelgve 25 
                 v+l G  GtGKT++++ +a  l+++
  MMETSP0890-20130614|1235_1 230 VVLLGENGTGKTTFIRMLAGLLSSD 254
                 6899***************998643 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.7e-05     0.052      17      61 ..     226     270 ..     219     280 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.7e-05
   PF13604.1  17 gdrvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakv 61 
                 ++ ++v+ G  GtGKtt ++ l+ +l+++++    +A   + a++
  MMETSP0890-20130614|1235_1 226 DSEIVVLLGENGTGKTTFIRMLAGLLSSDERAAAEAAEDTEKAQQ 270
                 34567777********************99888888877777765 PP

>> PF05272.6  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017     0.099      46      94 ..     220     269 ..     216     279 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00017
   PF05272.6  46 ePgckfD.evliLqGeqgigKstflkkLggewftdsikstegkdaleklq 94 
                 +Pg   D e+++L Ge g+gK+tf+++L+g   +d+  + e  +  ek q
  MMETSP0890-20130614|1235_1 220 QPGTFTDsEIVVLLGENGTGKTTFIRMLAGLLSSDERAAAEAAEDTEKAQ 269
                 788888846999*****************999999876666666655555 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014     0.086     128     195 ..     227     297 ..     180     303 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00014
  PF00437.15 128 rgnilvsGgTgsGKttllnallaeinkd.derivtiEDpvElqlegenqvqlnak..kakvtfadllraaL 195
                   ++++ G  g+GKtt++  l   + +d       +ED+   q      + + +k  k+  +f+  +r++L
  MMETSP0890-20130614|1235_1 227 SEIVVLLGENGTGKTTFIRMLAGLLSSDeRAAAEAAEDTEKAQQYSMPSLTISYKpqKIAPKFQGTVRQLL 297
                 5688999******************999223344799*999988777776666665555555555555554 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00021      0.13      34      59 ..     226     251 ..     212     283 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00021
                 TTSBEEEE-------HHHHHHH---- CS
  PF03193.11  34 kdktsvlvGqSGvGKSsLinallpel 59 
                 +++++vl+G+ G GK+++i +l++ l
  MMETSP0890-20130614|1235_1 226 DSEIVVLLGENGTGKTTFIRMLAGLL 251
                 4589****************998744 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00029      0.17       2      35 ..     230     266 ..     229     308 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00029
   PF13521.1   2 ivitGgpstGKTtlleaLaar...gypvvpEvarevl 35 
                 +v++G  +tGKTt ++ La +   + + ++E+a +  
  MMETSP0890-20130614|1235_1 230 VVLLGENGTGKTTFIRMLAGLlssDERAAAEAAEDTE 266
                 89*****************654547777788777655 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.5   3.2e+03     119     154 ..      93     126 ..      45     127 .. 0.59
   2 ?    9.4   0.0   0.00091      0.54      28      57 ..     222     251 ..     205     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.5
   PF13481.1 119 ddrrdalltadlerllaaieelegpdlvviDtlsrl 154
                 d+++d ++t+d+ +    +    + dl v+D ls++
  MMETSP0890-20130614|1235_1  93 DKEEDDTTTDDFTHKSYVLVV--EHDLAVLDYLSDF 126
                 333444445555443333333..3578888887776 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00091
   PF13481.1  28 gllprgsltllaGapgtGKStlalqlaaav 57 
                 g ++  ++++l G+ gtGK+t++  la+ +
  MMETSP0890-20130614|1235_1 222 GTFTDSEIVVLLGENGTGKTTFIRMLAGLL 251
                 66778899**************97777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.75u 0.62s 00:00:01.37 Elapsed: 00:00:01.05
# Mc/sec: 1077.22
//
Query:       MMETSP0890-20130614|1241_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.1   0.0    7.5e-09   35.0   0.0    2.1  2  PF13374.1  Tetratricopeptide repeat
    7.4e-10   38.5   0.0    9.2e-10   38.2   0.0    1.2  1  PF13424.1  Tetratricopeptide repeat
    9.8e-07   28.1   1.4     0.0026   17.4   0.0    2.2  2  PF07719.12 Tetratricopeptide repeat
      8e-06   25.2   0.1    1.3e-05   24.6   0.0    1.4  2  PF13414.1  TPR repeat
    0.00034   20.4   0.4        1.4    9.1   0.0    3.2  3  PF13431.1  Tetratricopeptide repeat
     0.0011   18.4   2.5       0.19   11.4   0.1    2.5  2  PF13181.1  Tetratricopeptide repeat
     0.0042   16.5   2.5      0.084   12.4   0.1    2.3  2  PF00515.23 Tetratricopeptide repeat
     0.0083   16.4   0.7        0.3   11.5   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.4   0.0       0.19   11.5   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
      0.038   14.5   0.0       0.07   13.6   0.0    1.5  1  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.5e-12   7.5e-09       2      41 ..       2      41 ..       1      42 [. 0.98
   2 !    7.3   0.0    0.0029         4       8      41 ..      50      83 ..      45      84 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 5.5e-12
   PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
                a++l nLA++l + g y eA +l+e+a  i++ ++G+dHP
  MMETSP0890-20130614|1241_1  2 ATSLYNLARLLKDKGIYFEAKPLYERAIVIWEDIHGPDHP 41
                89*************************************9 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0029
   PF13374.1  8 LAlalrargryeeAlaleeealairrrllGddHP 41
                LA +l a+g+ +eA + +  a + ++++l ++ P
  MMETSP0890-20130614|1241_1 50 LAKLLKALGKDGEAKKQFDIAIESQEKILDPNSP 83
                999************9999999999999999998 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.7e-13   9.2e-10       5      75 ..       2      73 ..       1      79 [. 0.93

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 6.7e-13
   PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
                at+l+nla +l+ +g y eA  lye+a+ +    +g+dhp + +    la l+ alg+  eA++ +  A+e 
  MMETSP0890-20130614|1241_1  2 ATSLYNLARLLKDKGIYFEAKPLYERAIVIwEDIHGPDHPKVSTGRKYLAKLLKALGKDGEAKKQFDIAIES 73
                899***************************77788****************************999877765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06    0.0026       2      28 ..       3      29 ..       2      31 .. 0.93
   2 !   10.0   0.2   0.00045      0.61       6      29 ..      49      72 ..      46      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.9e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                  lynl++++  +g y eA+ ++e+A+
  MMETSP0890-20130614|1241_1  3 TSLYNLARLLKDKGIYFEAKPLYERAI 29
                679***********************8 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00045
                HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  6 nlGlayyklgdyeeAleafekAle 29
                +l++++ +lg+  eA++ f+ A+e
  MMETSP0890-20130614|1241_1 49 YLAKLLKALGKDGEAKKQFDIAIE 72
                89******************9998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   9.4e-09   1.3e-05       3      66 ..       2      72 ..       1      80 [. 0.89
   2 ?    1.7   0.0      0.13   1.8e+02      21      38 ..      62      84 ..      62      85 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 9.4e-09
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAle 66
                A +l++l+  l  +g y eA  +ye+A+ ++     p++++       lA+++  lgk + eA + ++ A+e
  MMETSP0890-20130614|1241_1  2 ATSLYNLARLLKDKGIYFEAKPLYERAIVIWedihgPDHPKvstGRKYLAKLLKALGK-DGEAKKQFDIAIE 72
                67899*************************8778889999988888889********7.5**********98 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.13
   PF13414.1 21 eAieayekAle.....ldpnnae 38
                eA ++++ A+e     ldpn+++
  MMETSP0890-20130614|1241_1 62 EAKKQFDIAIEsqekiLDPNSPN 84
                57778888887666666888886 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0026       3.5      13      32 ..       2      21 ..       1      23 [. 0.82
   2 !    9.1   0.0    0.0011       1.4       1      33 [.      24      64 ..      24      65 .. 0.79
   3 ?   -1.2   0.1         2   2.8e+03       8      14 ..      78      84 ..      76      86 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0026
   PF13431.1 13 adaynnLAelllnnGdleeA 32
                a +++nLA+ll+++G + eA
  MMETSP0890-20130614|1241_1  2 ATSLYNLARLLKDKGIYFEA 21
                5689*********9966555 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0011
   PF13431.1  1 lyekaleld.....Pnnadayn...nLAelllnnGdleeAe 33
                lye+a+ +      P+++ + +   +LA+ll+++G+  eA+
  MMETSP0890-20130614|1241_1 24 LYERAIVIWedihgPDHPKVSTgrkYLAKLLKALGKDGEAK 64
                5788888855566688877777777***********99998 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 2
   PF13431.1  8 ldPnnad 14
                ldPn+++
  MMETSP0890-20130614|1241_1 78 LDPNSPN 84
                6899886 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00014      0.19       3      28 ..       4      29 ..       2      29 .. 0.93
   2 !    6.6   0.2    0.0047       6.4      13      28 ..      63      78 ..      47      79 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00014
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                ++ynl+++++++G y +Ak  +e+a+
  MMETSP0890-20130614|1241_1  4 SLYNLARLLKDKGIYFEAKPLYERAI 29
                79*********************996 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0047
                HTT-HHHHHHHHH--- CS
   PF13181.1 13 qlGdydkAkeylekal 28
                 ++++d A+e+ ek+l
  MMETSP0890-20130614|1241_1 63 AKKQFDIAIESQEKIL 78
                4677777888888877 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   6.1e-05     0.084       2      30 ..       3      31 ..       2      34 .. 0.91
   2 ?    4.1   0.3     0.025        35       6      29 ..      49      72 ..      46      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.1e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                 +lynl+ ++  +g y eA   ye+A+ +
  MMETSP0890-20130614|1241_1  3 TSLYNLARLLKDKGIYFEAKPLYERAIVI 31
                689***********************976 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.025
                HHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23  6 nlGnaylklgkydeAleyyekALe 29
                 l+ ++  lgk  eA + ++ A+e
  MMETSP0890-20130614|1241_1 49 YLAKLLKALGKDGEAKKQFDIAIE 72
                689999999999999999998887 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00022       0.3       2      27 ..       4      29 ..       3      31 .. 0.93
   2 ?    3.2   0.1     0.093   1.3e+02       6      28 ..      50      72 ..      49      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00022
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  2 AlyklalsyyklgdtdeAlealerli 27
                +ly+la++++  g + eA+ ++er i
  MMETSP0890-20130614|1241_1  4 SLYNLARLLKDKGIYFEAKPLYERAI 29
                69*********88**********987 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.093
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la+++++lg+  eA++ ++  i+
  MMETSP0890-20130614|1241_1 50 LAKLLKALGKDGEAKKQFDIAIE 72
                89999999899999999988776 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.19       1      34 [.       4      37 ..       4      39 .. 0.91
   2 ?    1.9   0.0      0.15   2.1e+02       4      27 ..      49      70 ..      48      81 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpld 34
                +l+nLarl  + g y +A  lyera+++++d  +
  MMETSP0890-20130614|1241_1  4 SLYNLARLLKDKGIYFEAKPLYERAIVIWEDIHG 37
                799*********************9999998765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.15
   PF13176.1  4 nLarlysrlgdyekAielyeraLa 27
                +La+l  +lg+  +A + +    a
  MMETSP0890-20130614|1241_1 49 YLAKLLKALGKDGEAKKQFDI--A 70
                789999999998888776666..4 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.1e-05      0.07       1      62 [.       6      80 ..       6      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.1e-05
   PF13432.1  1 lalArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaP 62
                + lAr+l + G y eA +++e+a+  +        P+    + +la +l +lg+  eA + ++ a+      l+P
  MMETSP0890-20130614|1241_1  6 YNLARLLKDKGIYFEAKPLYERAIVIWedihgpdhPKVSTGRKYLAKLLKALGKDGEAKKQFDIAIesqekILDP 80
                678888888888********************99999*********************99999998666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:01.84
# Mc/sec: 113.31
//
Query:       MMETSP0890-20130614|1242_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   13.1   0.0        0.1   12.8   0.0    1.2  1  PF08368.7 FAST kinase-like protein, subdomain 2


Domain annotation for each model (and alignments):
>> PF08368.7  FAST kinase-like protein, subdomain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.7e-06       0.1       6      59 ..      14      63 ..       8      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.7e-06
   PF08368.7  6 LleLnaavkLecpeykgplLperyqeksflvpllskkekrpsplqaevkeaLks 59
                L+      +Le+p+ ++pl +   q    l +  +++e +ps+lq+ v+ aL+ 
  MMETSP0890-20130614|1242_1 14 LYLVSLHFELEFPDQTLPLAHM--Q--AELRAAFKNREPKPSKLQRDVAAALSR 63
                555556679*********9996..4..467889999999999**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.30s 00:00:00.63 Elapsed: 00:00:00.79
# Mc/sec: 266.94
//
Query:       MMETSP0890-20130614|1246_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-60  200.2   9.5    1.1e-24   86.0   0.5    2.3  3  PF13424.1  Tetratricopeptide repeat
    3.9e-44  147.1   9.9    8.6e-17   60.3   0.0    4.0  4  PF13374.1  Tetratricopeptide repeat
    9.4e-28   95.5  15.5    2.2e-12   46.2   1.4    2.8  3  PF13414.1  TPR repeat
    5.5e-19   66.7  14.3    5.3e-08   32.0   0.3    4.0  4  PF00515.23 Tetratricopeptide repeat
    8.8e-16   56.2   5.2    1.5e-05   24.3   0.0    3.7  4  PF13176.1  Tetratricopeptide repeat
    1.1e-15   56.0  12.8    1.3e-05   24.6   0.2    3.7  4  PF07719.12 Tetratricopeptide repeat
    5.4e-13   49.1   1.1    1.7e-07   31.5   0.1    2.2  2  PF13432.1  Tetratricopeptide repeat
    9.3e-10   38.1   0.8     0.0074   16.7   0.0    3.2  3  PF13428.1  Tetratricopeptide repeat
    1.1e-09   37.2  10.7      0.012   15.2   0.4    3.5  4  PF13181.1  Tetratricopeptide repeat
    3.3e-09   36.1   9.9    0.00042   20.2   0.1    5.0  4  PF13431.1  Tetratricopeptide repeat
    2.4e-07   29.7   0.1       0.27   10.4   0.0    3.3  3  PF10516.4  SHNi-TPR
      1e-06   28.3   1.6       0.14   11.9   0.1    3.2  3  PF07720.7  Tetratricopeptide repeat
    5.5e-06   26.3   0.2    2.7e-05   24.0   0.2    2.0  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      1e-05   24.5   0.0       0.14   10.9   0.0    2.7  3  PF04910.9  Transcriptional repressor TCF25
    2.5e-05   24.4   2.0       0.61   10.4   0.0    3.1  3  PF14357.1  Domain of unknown function (DUF4404)
    0.00066   19.7   0.0       0.85   10.1   0.0    3.3  3  PF07721.9  Tetratricopeptide repeat
      0.001   18.7   0.7       0.14   11.9   0.1    2.1  2  PF13371.1  Tetratricopeptide repeat
     0.0056   16.3   0.0          2    8.1   0.0    2.6  3  PF07627.6  Protein of unknown function (DUF1588)
     0.0064   16.7   5.1        7.7    7.1   0.0    3.4  3  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   14.9   0.3         27    4.4   0.0    3.1  3  PF11512.3  Agrobacterium tumefaciens protein Atu4866
      0.016   14.6   0.1          5    6.6   0.0    2.3  2  PF04781.7  Protein of unknown function (DUF627)
       0.03   14.2   0.6          9    6.2   0.1    2.6  2  PF12688.2  Tetratrico peptide repeat
      0.056   12.4   0.2         15    4.4   0.0    2.7  3  PF00244.15 14-3-3 protein
        0.1   12.4   3.0        1.6    8.5   0.1    2.9  3  PF04212.13 MIT (microtubule interacting and transport) domain
       0.11   12.4   0.0        3.2    7.6   0.0    2.4  3  PF11432.3  Protein of unknown function (DUF3197)
       0.11   12.3   0.4         12    5.8   0.0    2.8  3  PF09094.6  Domain of unknown function (DUF1925)
       0.39   10.6   2.3         40    4.1   0.0    3.0  3  PF10252.4  Casein kinase substrate phosphoprotein PP28


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.3   1.1e-20   5.6e-18      15      77 ..       2      65 ..       1      66 [. 0.96
   2 !   86.0   0.5   2.1e-27   1.1e-24       1      77 [.      30     107 ..      30     108 .. 0.97
   3 !   66.4   0.0   2.9e-21   1.5e-18       1      58 [.      72     130 ..      72     132 .] 0.95

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 1.1e-20
   PF13424.1 15 lrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                l+ +g+ydeA  ly++al++  ++lg++hp +a  l nla l++++g+y eA  y ++Al+i+e
  MMETSP0890-20130614|1246_1  2 LKNQGKYDEAKPLYKRALKIrEESLGPNHPHVAEGLSNLAGLLQQQGKYNEAMSYQQRALKIRE 65
                5689****************9999**************************************98 PP

  == domain 2    score: 86.0 bits;  conditional E-value: 2.1e-27
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hp++a  l+nla++l+++g+y eA ++ ++al++  + lg++hpd+a++lnnla l+  +g+ydeA+++ e+Al+i+e
  MMETSP0890-20130614|1246_1  30 HPHVAEGLSNLAGLLQQQGKYNEAMSYQQRALKIrEEMLGPNHPDVAMTLNNLAALLKNQGKYDEAKPLCERALKIRE 107
                 899*******************************77788*************************************98 PP

  == domain 3    score: 66.4 bits;  conditional E-value: 2.9e-21
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlyla 58 
                 hpd+a++lnnla +l+ +g+ydeA  l+e+al++  + lg++hpd+a++lnnla l+  
  MMETSP0890-20130614|1246_1  72 HPDVAMTLNNLAALLKNQGKYDEAKPLCERALKIrEEMLGPNHPDVATTLNNLALLLKN 130
                 9*********************************77788***************99865 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.8e-11   9.2e-09      12      42 .]       2      32 ..       1      32 [. 0.95
   2 !   46.0   0.1   5.1e-15   2.6e-12       2      42 .]      34      74 ..      33      74 .. 0.96
   3 !   60.3   0.0   1.7e-19   8.6e-17       1      42 []      75     116 ..      75     116 .. 0.99
   4 !   10.4   0.6   0.00084      0.43       1      15 [.     117     131 ..     117     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.8e-11
   PF13374.1 12 lrargryeeAlaleeealairrrllGddHPd 42
                l ++g+y+eA +l+ +al ir++ lG++HP+
  MMETSP0890-20130614|1246_1  2 LKNQGKYDEAKPLYKRALKIREESLGPNHPH 32
                678***************************6 PP

  == domain 2    score: 46.0 bits;  conditional E-value: 5.1e-15
   PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                a  l+nLA +l+++g+y+eA  ++++al ir++ lG++HPd
  MMETSP0890-20130614|1246_1 34 AEGLSNLAGLLQQQGKYNEAMSYQQRALKIREEMLGPNHPD 74
                6779************************************8 PP

  == domain 3    score: 60.3 bits;  conditional E-value: 1.7e-19
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a++lnnLA +l ++g+y+eA +l e+al ir++ lG++HPd
  MMETSP0890-20130614|1246_1  75 VAMTLNNLAALLKNQGKYDEAKPLCERALKIREEMLGPNHPD 116
                 8****************************************8 PP

  == domain 4    score: 10.4 bits;  conditional E-value: 0.00084
   PF13374.1   1 taaalnnLAlalrar 15 
                 +a++lnnLAl+l ++
  MMETSP0890-20130614|1246_1 117 VATTLNNLALLLKNQ 131
                 79*********9876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.2     5e-13   2.5e-10      15      68 ..       4      64 ..       1      65 [. 0.86
   2 !   46.2   1.4   4.4e-15   2.2e-12       2      68 ..      33     106 ..      32     107 .. 0.89
   3 !   30.2   0.7   4.5e-10   2.3e-07       2      49 ..      75     130 ..      74     132 .] 0.87

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 5e-13
   PF13414.1 15 kegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68
                ++g+ydeA  +y++Al+++        p+ ae ++nlA +++++g +y eA+ + ++Al+++
  MMETSP0890-20130614|1246_1  4 NQGKYDEAKPLYKRALKIReeslgpnhPHVAEGLSNLAGLLQQQG-KYNEAMSYQQRALKIR 64
                79***************966666644455588*************.6************986 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 4.4e-15
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68 
                 +Ae l +l+  l ++g+y eA  + ++Al+++     pn+++    ++nlA+++ ++g +y+eA   +e+Al+++
  MMETSP0890-20130614|1246_1  33 VAEGLSNLAGLLQQQGKYNEAMSYQQRALKIReemlgPNHPDvamTLNNLAALLKNQG-KYDEAKPLCERALKIR 106
                 588899************************966677777777777*************.6************986 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 4.5e-10
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylk 49 
                 +A +l++l+  l ++g+ydeA  ++e+Al+++     pn+++    ++nlAl++ +
  MMETSP0890-20130614|1246_1  75 VAMTLNNLAALLKNQGKYDEAKPLCERALKIReemlgPNHPDvatTLNNLALLLKN 130
                 68899*************************966667788877777*******9987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   3.5e-07   0.00018      12      32 ..       3      23 ..       1      25 [. 0.90
   2 !   20.7   0.2   3.8e-07   0.00019       1      32 [.      34      65 ..      34      67 .. 0.94
   3 !   32.0   0.3     1e-10   5.3e-08       2      32 ..      77     107 ..      76     109 .. 0.93
   4 ?    1.9   0.1      0.32   1.6e+02       1      14 [.     118     131 ..     118     132 .] 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.5e-07
                HHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23 12 lklgkydeAleyyekALelnP 32
                 ++gkydeA   y++AL++++
  MMETSP0890-20130614|1246_1  3 KNQGKYDEAKPLYKRALKIRE 23
                68****************986 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3.8e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a+ l nl+ +++++gky+eA  y ++AL++++
  MMETSP0890-20130614|1246_1 34 AEGLSNLAGLLQQQGKYNEAMSYQQRALKIRE 65
                7899*************************986 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 1e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnP 32 
                  +l+nl++++ ++gkydeA   +e+AL++++
  MMETSP0890-20130614|1246_1  77 MTLNNLAALLKNQGKYDEAKPLCERALKIRE 107
                 689*************************986 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylkl 14 
                 a +l+nl++++ ++
  MMETSP0890-20130614|1246_1 118 ATTLNNLALLLKNQ 131
                 5689*****99876 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-05     0.019      11      33 ..       4      26 ..       2      29 .. 0.85
   2 !   17.8   0.1   3.4e-06    0.0017       2      34 ..      37      69 ..      36      71 .. 0.91
   3 !   24.3   0.0   2.9e-08   1.5e-05       1      34 [.      78     111 ..      78     113 .. 0.92
   4 ?   -1.1   0.1       3.8   1.9e+03       1       9 [.     120     128 ..     120     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-05
   PF13176.1 11 rlgdyekAielyeraLaltkdpl 33
                ++g+y++A  ly+raL+++++ l
  MMETSP0890-20130614|1246_1  4 NQGKYDEAKPLYKRALKIREESL 26
                69************999987765 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 3.4e-06
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                l+nLa l +++g+y +A ++ +raL+++++ l+
  MMETSP0890-20130614|1246_1 37 LSNLAGLLQQQGKYNEAMSYQQRALKIREEMLG 69
                89*********************9999988766 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 2.9e-08
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+nLa l  ++g+y++A  l+eraL+++++ l+
  MMETSP0890-20130614|1246_1  78 TLNNLAALLKNQGKYDEAKPLCERALKIREEMLG 111
                 79**********************9999988766 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 3.8
   PF13176.1   1 allnLarly 9  
                 +l+nLa l 
  MMETSP0890-20130614|1246_1 120 TLNNLALLL 128
                 799**9875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   4.1e-06    0.0021      12      32 ..       3      23 ..       1      25 [. 0.88
   2 !   21.0   0.4   3.6e-07   0.00018       1      31 [.      34      64 ..      34      66 .. 0.94
   3 !   24.6   0.2   2.5e-08   1.3e-05       2      31 ..      77     106 ..      76     108 .. 0.92
   4 ?   -1.2   0.0       4.5   2.3e+03       2      13 ..     119     130 ..     118     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.1e-06
                HHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12 12 yklgdyeeAleafekAleldP 32
                 ++g+y+eA+ ++++Al++  
  MMETSP0890-20130614|1246_1  3 KNQGKYDEAKPLYKRALKIRE 23
                68****************975 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.6e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                ae+l nl+ ++ ++g+y+eA  + ++Al++ 
  MMETSP0890-20130614|1246_1 34 AEGLSNLAGLLQQQGKYNEAMSYQQRALKIR 64
                799*************************986 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 2.5e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                   l+nl+ ++ ++g+y+eA+ ++e+Al++ 
  MMETSP0890-20130614|1246_1  77 MTLNNLAALLKNQGKYDEAKPLCERALKIR 106
                 579*************************86 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyk 13 
                   l+nl+l++ +
  MMETSP0890-20130614|1246_1 119 TTLNNLALLLKN 130
                 578999998866 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   3.4e-10   1.7e-07       9      60 ..       4      63 ..       1      73 [. 0.90
   2 !   16.5   0.0   1.8e-05     0.009       3      40 ..      82     127 ..      80     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3.4e-10
   PF13432.1  9 raGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                ++G+ydeA +++++al+          P+ ae l +la +l ++g++ eA  + ++al++
  MMETSP0890-20130614|1246_1  4 NQGKYDEAKPLYKRALKIReeslgpnhPHVAEGLSNLAGLLQQQGKYNEAMSYQQRALKI 63
                79***********************9999****************************954 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1.8e-05
   PF13432.1   3 lArallraGdydeAlaaleaalala........Peaaeallllaea 40 
                 lA +l ++G+ydeA ++ e+al+          P+ a  l +la +
  MMETSP0890-20130614|1246_1  82 LAALLKNQGKYDEAKPLCERALKIReemlgpnhPDVATTLNNLALL 127
                 899999*****************99999995555555555555554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.002         1      12      34 ..       3      25 ..       1      37 [. 0.79
   2 !    9.7   0.0    0.0026       1.3       2      39 ..      35      77 ..      33      79 .. 0.84
   3 !   16.7   0.0   1.5e-05    0.0074       4      39 ..      79     119 ..      76     127 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.002
   PF13428.1 12 lalGdpdeAiallrralalaPdd 34
                 ++G +deA  l++ral+   ++
  MMETSP0890-20130614|1246_1  3 KNQGKYDEAKPLYKRALKIREES 25
                689**************965443 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0026
   PF13428.1  2 eallalarallalGdpdeAiallrrala.....laPddaeall 39
                e l  la +l ++G + eA+ + +ral+     l+P+++++ +
  MMETSP0890-20130614|1246_1 35 EGLSNLAGLLQQQGKYNEAMSYQQRALKireemLGPNHPDVAM 77
                67889**********************9777777788887765 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.5e-05
   PF13428.1   4 llalarallalGdpdeAiallrrala.....laPddaeall 39 
                 l  la++l ++G +deA  l++ral+     l+P+++++ +
  MMETSP0890-20130614|1246_1  79 LNNLAALLKNQGKYDEAKPLCERALKireemLGPNHPDVAT 119
                 6689*********************9777775666666554 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   0.00017     0.085      12      31 ..       3      22 ..       2      25 .. 0.90
   2 !   15.2   0.4   2.3e-05     0.012       4      31 ..      37      64 ..      34      65 .. 0.88
   3 !   14.9   0.1   2.8e-05     0.014       4      31 ..      79     106 ..      77     107 .. 0.93
   4 ?   -2.3   0.0       9.2   4.6e+03       3      12 ..     120     129 ..     118     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00017
                HHTT-HHHHHHHHH---HHH CS
   PF13181.1 12 rqlGdydkAkeylekalelk 31
                ++ G+yd+Ak  +++al++ 
  MMETSP0890-20130614|1246_1  3 KNQGKYDEAKPLYKRALKIR 22
                689***************96 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2.3e-05
                TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                + nl+ ++ q G+y +A++y ++al++ 
  MMETSP0890-20130614|1246_1 37 LSNLAGLLQQQGKYNEAMSYQQRALKIR 64
                66899999******************95 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 2.8e-05
                 TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelk 31 
                 ++nl+ ++++ G+yd+Ak   e+al++ 
  MMETSP0890-20130614|1246_1  79 LNNLAALLKNQGKYDEAKPLCERALKIR 106
                 789**********************995 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 9.2
                 -TTT---HHH CS
   PF13181.1   3 ayynlGdiYr 12 
                 +++nl+++++
  MMETSP0890-20130614|1246_1 120 TLNNLALLLK 129
                 6788888876 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.42   2.1e+02      23      33 ..       2      12 ..       1      13 [. 0.89
   2 !    8.6   0.1    0.0042       2.1       1      32 [.      14      53 ..      14      55 .. 0.75
   3 !   20.2   0.1   8.2e-07   0.00042       9      33 ..      72      96 ..      68      97 .. 0.93
   4 !    8.0   0.2    0.0066       3.3       9      26 ..     114     131 ..      98     132 .] 0.74

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.42
   PF13431.1 23 llnnGdleeAe 33
                l+n+G+++eA+
  MMETSP0890-20130614|1246_1  2 LKNQGKYDEAK 12
                789******97 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0042
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeA 32
                ly++al++      Pn+   a+ + nLA ll+ +G++ eA
  MMETSP0890-20130614|1246_1 14 LYKRALKIReeslgPNHphvAEGLSNLAGLLQQQGKYNEA 53
                577788876233334447779999*************998 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 8.2e-07
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a+ +nnLA ll+n+G+++eA+
  MMETSP0890-20130614|1246_1 72 HPDVAMTLNNLAALLKNQGKYDEAK 96
                7999*******************97 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0066
   PF13431.1   9 dPnnadaynnLAelllnn 26 
                 +P+ a  +nnLA+ll+n+
  MMETSP0890-20130614|1246_1 114 HPDVATTLNNLALLLKNQ 131
                 577799999******986 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00073      0.37      15      37 ..       6      28 ..       4      29 .. 0.88
   2 !   10.4   0.0   0.00052      0.27      12      37 ..      45      70 ..      36      71 .. 0.85
   3 ?    6.1   0.0     0.012         6      16      37 ..      91     112 ..      88     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00073
   PF10516.4 15 EnFpqAveDlrkaLeLreqllpp 37
                +++++A   +++aL++re+ l p
  MMETSP0890-20130614|1246_1  6 GKYDEAKPLYKRALKIREESLGP 28
                689999999**********9876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00052
   PF10516.4 12 lEnEnFpqAveDlrkaLeLreqllpp 37
                + ++++++A +  ++aL++re+ l p
  MMETSP0890-20130614|1246_1 45 QQQGKYNEAMSYQQRALKIREEMLGP 70
                66899*****************9876 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.012
   PF10516.4  16 nFpqAveDlrkaLeLreqllpp 37 
                 ++++A    ++aL++re+ l p
  MMETSP0890-20130614|1246_1  91 KYDEAKPLCERALKIREEMLGP 112
                 6777777779********9876 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0044       2.3      13      35 ..       4      24 ..       4      25 .. 0.88
   2 !   11.9   0.1   0.00027      0.14       3      24 ..      36      57 ..      34      67 .. 0.77
   3 ?    6.5   0.0     0.013       6.6       7      20 ..      82      95 ..      77      98 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0044
                HTT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7 13 nkkkyqeArelfsYallaildke 35
                n++ky+eA  l  Y+ + ++++e
  MMETSP0890-20130614|1246_1  4 NQGKYDEAKPL--YKRALKIREE 24
                89*********..9999888875 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHTT-HHHHHHH. CS
   PF07720.7  3 ylyslAaefynkkkyqeArelf 24
                 l  lA  +++++ky+eA  + 
  MMETSP0890-20130614|1246_1 36 GLSNLAGLLQQQGKYNEAMSYQ 57
                57778999**********9884 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.013
                HHHHHHHTT-HHHH CS
   PF07720.7  7 lAaefynkkkyqeA 20
                lAa + n++ky+eA
  MMETSP0890-20130614|1246_1 82 LAALLKNQGKYDEA 95
                689999*******9 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   5.4e-08   2.7e-05       1      78 [.       4      96 ..       4     102 .. 0.80
   2 !    8.6   0.0    0.0036       1.8      17      64 ..      69     121 ..      57     131 .. 0.62

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 5.4e-08
                HTT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHH..HHHH.HTT-HHHHC CS
   PF12895.2  1 eqhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk......leldssslgcryllA..rcll.klgkydeAi 78
                +q+ y++A  l+ ++l+   +      p  ++ l +lA  l+++g+y++A+ + ++      + l +++++ ++ l+   +ll  +gkydeA 
  MMETSP0890-20130614|1246_1  4 NQGKYDEAKPLYKRALKIREEslgpnHPhVAEGLSNLAGLLQQQGKYNEAMSYQQRalkireEMLGPNHPDVAMTLNnlAALLkNQGKYDEAK 96
                6899**************8776665422444477777*****************99*999988888899*****88445444437888***95 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0036
                 CC-ST-HHHHCHHH.HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH CS
   PF12895.2  17 aespkdpedaylya.lAlclylngeykrAyellrk......leldssslgcryll 64 
                   ++  p+ a+ ++ lA  l ++g+y++A  l+++      + l +++++ +  l
  MMETSP0890-20130614|1246_1  69 GPNH--PDVAMTLNnLAALLKNQGKYDEAKPLCERalkireEMLGPNHPDVATTL 121
                 4443..3455555458889999999999988888886666555555666665555 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.3   1.5e+02      51      77 ..       3      29 ..       1      33 [. 0.88
   2 !   10.6   0.0   0.00034      0.17      35      77 ..      29      71 ..      24      76 .. 0.91
   3 !   10.9   0.0   0.00028      0.14      42      83 ..      78     119 ..      70     131 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.3
   PF04910.9 51 reqgdfevAndlieraLfilervfhps 77
                ++qg++ +A  l +raL i e+++ p+
  MMETSP0890-20130614|1246_1  3 KNQGKYDEAKPLYKRALKIREESLGPN 29
                789**************9999998876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00034
   PF04910.9 35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhps 77
                ++P   ++L +l+ ++++qg++++A+ + +raL i e+++ p+
  MMETSP0890-20130614|1246_1 29 NHPHVAEGLSNLAGLLQQQGKYNEAMSYQQRALKIREEMLGPN 71
                689999***************************9999888776 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00028
   PF04910.9  42 tLlqlsevyreqgdfevAndlieraLfilervfhpsFsplll 83 
                 tL +l+ ++++qg++ +A  l+eraL i e+++ p+   +  
  MMETSP0890-20130614|1246_1  78 TLNNLAALLKNQGKYDEAKPLCERALKIREEMLGPNHPDVAT 119
                 99***************************9999998755444 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.037        19      58      84 ..      22      48 ..       1      49 [. 0.72
   2 !   10.4   0.0    0.0012      0.61      64      84 ..      70      90 ..      48      91 .. 0.83
   3 !    7.5   0.0    0.0096       4.9      59      82 ..     107     130 ..      88     130 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.037
   PF14357.1 58 averFeaeHPklagtlrnildsLanmG 84
                  e    +HP++a+ l n++  L++ G
  MMETSP0890-20130614|1246_1 22 REESLGPNHPHVAEGLSNLAGLLQQQG 48
                56677789************9999855 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0012
   PF14357.1 64 aeHPklagtlrnildsLanmG 84
                 +HP++a+tl+n++  L+n G
  MMETSP0890-20130614|1246_1 70 PNHPDVAMTLNNLAALLKNQG 90
                58***************9866 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0096
   PF14357.1  59 verFeaeHPklagtlrnildsLan 82 
                  e    +HP++a tl+n++  L+n
  MMETSP0890-20130614|1246_1 107 EEMLGPNHPDVATTLNNLALLLKN 130
                 4555679***********999976 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       2.2   1.1e+03      14      23 ..       5      14 ..       2      17 .. 0.81
   2 ?    5.0   0.0     0.072        36       2      20 ..      35      53 ..      34      55 .. 0.86
   3 !   10.1   0.0    0.0017      0.85       2      26 .]      77     101 ..      76     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 2.2
                -------HHH CS
   PF07721.9 14 lGdldeAral 23
                +G +deA  l
  MMETSP0890-20130614|1246_1  5 QGKYDEAKPL 14
                9******765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.072
                HHH---HHHHHH------- CS
   PF07721.9  2 rallaLArallalGdldeA 20
                  l++LA +l+++G + eA
  MMETSP0890-20130614|1246_1 35 EGLSNLAGLLQQQGKYNEA 53
                5789**********98776 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0017
                 HHH---HHHHHH-------HHHHHT CS
   PF07721.9   2 rallaLArallalGdldeAraller 26 
                  +l +LA +l  +G +deA  l er
  MMETSP0890-20130614|1246_1  77 MTLNNLAALLKNQGKYDEAKPLCER 101
                 56789**************999886 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00034      0.17      25      68 ..      30      78 ..       4      83 .. 0.75
   2 !   11.9   0.1   0.00028      0.14       4      67 ..      43     119 ..      40     125 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00034
   PF13371.1 25 aPddpyerRDrGlllaqlgclaaAaedLeafl.....elcpdapdaeli 68
                +P+ ++ +   + ll+q+g + +A+   +++l      l p++pd+++ 
  MMETSP0890-20130614|1246_1 30 HPHVAEGLSNLAGLLQQQGKYNEAMSYQQRALkireeMLGPNHPDVAMT 78
                78888889999*********************66555555588888776 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00028
   PF13371.1   4 iylreedferALavverllll........aPddpyerRDrGlllaqlgclaaAaedLeafl.....elcpdapdael 67 
                 ++++++++ +A+ +++r l +        +Pd +  +   + ll  +g + +A    e++l      l p++pd+++
  MMETSP0890-20130614|1246_1  43 LLQQQGKYNEAMSYQQRALKIreemlgpnHPDVAMTLNNLAALLKNQGKYDEAKPLCERALkireeMLGPNHPDVAT 119
                 67899999999999999999999999999999999999999999999999999999999995544444447777665 PP

>> PF07627.6  Protein of unknown function (DUF1588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.25   1.2e+02      16      64 ..       6      55 ..       2      60 .. 0.74
   2 ?    6.6   0.0     0.012         6       4      50 ..      36      83 ..      33      89 .. 0.79
   3 !    8.1   0.0     0.004         2       9      49 ..      83     124 ..      77     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.25
   PF07627.6 16 segkrtsp.vkRGvwvlekllgeelpppppnvpaleeeeeekktlrerle 64
                ++ ++ +p  kR+  ++e+ lg + p++++  ++l+   +++    e+++
  MMETSP0890-20130614|1246_1  6 GKYDEAKPlYKRALKIREESLGPNHPHVAEGLSNLAGLLQQQGKYNEAMS 55
                55566677469***************999999988877776666666555 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.012
   PF07627.6  4 Glltqaavlaatsegkrt.spvkRGvwvlekllgeelpppppnvpale 50
                Gl   a++l+++++ ++  s  +R+  ++e++lg + p+++ + ++l+
  MMETSP0890-20130614|1246_1 36 GLSNLAGLLQQQGKYNEAmSYQQRALKIREEMLGPNHPDVAMTLNNLA 83
                77777888888887666515589***************9999888775 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.004
   PF07627.6   9 aavlaatsegkrtsp.vkRGvwvlekllgeelpppppnvpal 49 
                 aa+l+ +++ ++ +p  +R+  ++e++lg + p+++++ ++l
  MMETSP0890-20130614|1246_1  83 AALLKNQGKYDEAKPlCERALKIREEMLGPNHPDVATTLNNL 124
                 789999999999999779***************999988766 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.015       7.7      11      28 ..       3      20 ..       1      25 [. 0.86
   2 ?    4.1   0.2      0.13        68       4      22 ..      38      56 ..      35      64 .. 0.71
   3 ?    6.5   0.0     0.022        11       6      28 ..      82     104 ..      81     106 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.015
                HHHHHHHHHHHHHHHHHH CS
   PF13174.1 11 yklgdtdeAlealerlik 28
                +++g++deA+ +++r +k
  MMETSP0890-20130614|1246_1  3 KNQGKYDEAKPLYKRALK 20
                4599***********997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.13
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  4 yklalsyyklgdtdeAlea 22
                 +la +++++g++ eA+ +
  MMETSP0890-20130614|1246_1 38 SNLAGLLQQQGKYNEAMSY 56
                5677677777799999887 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                 la +++++g++deA+ + er +k
  MMETSP0890-20130614|1246_1  82 LAALLKNQGKYDEAKPLCERALK 104
                 777888899******99999876 PP

>> PF11512.3  Agrobacterium tumefaciens protein Atu4866
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.14        70      21      39 ..       2      20 ..       1      32 [. 0.81
   2 ?    4.1   0.0     0.068        34      21      46 ..      44      69 ..      40      78 .. 0.85
   3 ?    4.4   0.0     0.054        27      21      46 ..      86     111 ..      77     115 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.14
   PF11512.3 21 LlpngrYdearGeresayq 39
                L  +g+Ydea+   ++a +
  MMETSP0890-20130614|1246_1  2 LKNQGKYDEAKPLYKRALK 20
                6789******988887765 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.068
   PF11512.3 21 LlpngrYdearGeresayqGrYevtG 46
                L  +g+Y+ea   +++a + r e+ G
  MMETSP0890-20130614|1246_1 44 LQQQGKYNEAMSYQQRALKIREEMLG 69
                5678************9988877766 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.054
   PF11512.3  21 LlpngrYdearGeresayqGrYevtG 46 
                 L  +g+Ydea+   e+a + r e+ G
  MMETSP0890-20130614|1246_1  86 LKNQGKYDEAKPLCERALKIREEMLG 111
                 6678******9999888877766655 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0099         5      75     108 ..      31      64 ..      18      69 .. 0.88
   2 ?    5.9   0.0     0.016       8.2      74     108 ..      72     106 ..      66     110 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0099
   PF04781.7  75 slaAlsLfelakelgsvkyYkkavkkakeaLsvt 108
                 +  A +L +la  l+ +  Y++a+++ ++aL + 
  MMETSP0890-20130614|1246_1  31 PHVAEGLSNLAGLLQQQGKYNEAMSYQQRALKIR 64 
                 5669***************************986 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.016
   PF04781.7  74 sslaAlsLfelakelgsvkyYkkavkkakeaLsvt 108
                 +++ A+ L +la  l+ +  Y++a   + +aL + 
  MMETSP0890-20130614|1246_1  72 HPDVAMTLNNLAALLKNQGKYDEAKPLCERALKIR 106
                 5788****************************986 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.024        12      14      29 ..       5      20 ..       2      26 .. 0.89
   2 ?    6.2   0.1     0.018         9       8      67 ..      41     105 ..      34     130 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.024
   PF12688.2 14 tGeeakAvplYrrAla 29
                 G+ ++A plY+rAl+
  MMETSP0890-20130614|1246_1  5 QGKYDEAKPLYKRALK 20
                5999**********95 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.018
   PF12688.2   8 agarDstGeeakAvplYrrAla..aGLagarrrrati...qlaSsLRnlGrveeslalleaelae 67 
                 ag   + G+ ++A+   +rAl+  + + g +++ + +    la+ L+n G+ +e+  l e++l+ 
  MMETSP0890-20130614|1246_1  41 AGLLQQQGKYNEAMSYQQRALKirEEMLGPNHPDVAMtlnNLAALLKNQGKYDEAKPLCERALKI 105
                 66666677777777777777642233333333333221125788899999999999888888773 PP

>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.038        19     141     165 ..       7      31 ..       2      37 .. 0.87
   2 ?    4.4   0.0     0.029        15       5      34 ..      38      67 ..      34      75 .. 0.80
   3 ?    0.4   0.0      0.51   2.6e+02       7      33 ..      82     108 ..      76     121 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHHHHHHS-TT-T CS
  PF00244.15 141 aaekaleaYkeAleiaeselkpthp 165
                   ++a+  Yk+Al+i e++l p hp
  MMETSP0890-20130614|1246_1   7 KYDEAKPLYKRALKIREESLGPNHP 31 
                 578999****************998 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.029
                HHHHHHHHHTT-HHHHHHHH---TT---.- CS
  PF00244.15  5 vylaklaeqaeryddmveamkklvelkeeL 34
                 +la l +q ++y++++++ ++++++ ee+
  MMETSP0890-20130614|1246_1 38 SNLAGLLQQQGKYNEAMSYQQRALKIREEM 67
                568889999999999999999999995543 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.51
                 HHHHHHHTT-HHHHHHHH---TT---. CS
  PF00244.15   7 laklaeqaeryddmveamkklvelkee 33 
                 la l ++ ++yd++    ++++++ ee
  MMETSP0890-20130614|1246_1  82 LAALLKNQGKYDEAKPLCERALKIREE 108
                 555666666666666666666665333 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0031       1.6      17      34 ..       4      21 ..       2      26 .. 0.90
   2 ?    2.1   0.1      0.31   1.6e+02      17      34 ..      46      63 ..      43      68 .. 0.78
   3 ?    0.5   0.0      0.98     5e+02      18      32 ..      89     103 ..      78     110 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0031
                HTT-HHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlel 34
                ++gky+eA  lYk Al++
  MMETSP0890-20130614|1246_1  4 NQGKYDEAKPLYKRALKI 21
                689************986 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.31
                HTT-HHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlel 34
                ++gky+eA  + + Al++
  MMETSP0890-20130614|1246_1 46 QQGKYNEAMSYQQRALKI 63
                578999998888888765 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.98
                 TT-HHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAl 32 
                 +gky+eA  l + Al
  MMETSP0890-20130614|1246_1  89 QGKYDEAKPLCERAL 103
                 566666654444443 PP

>> PF11432.3  Protein of unknown function (DUF3197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0064       3.2      45      74 ..      21      49 ..       3      58 .. 0.80
   2 ?    2.3   0.0      0.29   1.5e+02      48      74 ..      66      91 ..      54     113 .. 0.86
   3 ?   -1.6   0.0       4.7   2.4e+03      48      69 ..     108     128 ..      88     131 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0064
   PF11432.3 45 lvapafGPaygpeGaealaelvrladerGi 74
                +  +++GP + p+ ae l++l +l++++G 
  MMETSP0890-20130614|1246_1 21 IREESLGPNH-PHVAEGLSNLAGLLQQQGK 49
                456789****.*****************96 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.29
   PF11432.3 48 pafGPaygpeGaealaelvrladerGi 74
                + +GP + p+ a +l +l  l++++G 
  MMETSP0890-20130614|1246_1 66 EMLGPNH-PDVAMTLNNLAALLKNQGK 91
                6789999.9999*********999995 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 4.7
   PF11432.3  48 pafGPaygpeGaealaelvrla 69 
                 + +GP + p+ a +l +l  l+
  MMETSP0890-20130614|1246_1 108 EMLGPNH-PDVATTLNNLALLL 128
                 5567777.77777777776665 PP

>> PF09094.6  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.024        12       9      26 ..       7      24 ..       3      49 .. 0.80
   2 ?    2.0   0.1      0.36   1.8e+02       9      29 ..      49      69 ..      43      91 .. 0.70
   3 ?    2.1   0.0      0.35   1.8e+02       8      28 ..      90     110 ..      84     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.024
                H-HHHHHHHHHHHHHHHH CS
   PF09094.6  9 kYeesnemhkrmlevskk 26
                kY+e++ ++kr l+++++
  MMETSP0890-20130614|1246_1  7 KYDEAKPLYKRALKIREE 24
                9*************9986 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.36
                H-HHHHHHHHHHHHHHHHHTT CS
   PF09094.6  9 kYeesnemhkrmlevskklks 29
                kY+e+ + ++r l++++++  
  MMETSP0890-20130614|1246_1 49 KYNEAMSYQQRALKIREEMLG 69
                9************99987543 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.35
                 HH-HHHHHHHHHHHHHHHHHT CS
   PF09094.6   8 vkYeesnemhkrmlevskklk 28 
                  kY+e++ + +r l++++++ 
  MMETSP0890-20130614|1246_1  90 GKYDEAKPLCERALKIREEML 110
                 59*************998754 PP

>> PF10252.4  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.17        88      45      66 ..       2      23 ..       1      25 [. 0.85
   2 ?    1.7   0.0      0.46   2.3e+02      45      66 ..      44      65 ..      41      67 .. 0.85
   3 ?    4.1   0.0      0.08        40      45      67 ..      86     108 ..      80     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.17
   PF10252.4 45 lhaeGKteearaDLaRLalire 66
                l+ +GK +ea+    R   ire
  MMETSP0890-20130614|1246_1  2 LKNQGKYDEAKPLYKRALKIRE 23
                789********98888888887 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.46
   PF10252.4 45 lhaeGKteearaDLaRLalire 66
                l+++GK +ea +  +R   ire
  MMETSP0890-20130614|1246_1 44 LQQQGKYNEAMSYQQRALKIRE 65
                799*******998888888887 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.08
   PF10252.4  45 lhaeGKteearaDLaRLalireq 67 
                 l+ +GK +ea+   +R   ire+
  MMETSP0890-20130614|1246_1  86 LKNQGKYDEAKPLCERALKIREE 108
                 789********999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 427.46
//
Query:       MMETSP0890-20130614|1240_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.8   0.0       0.18   11.7   0.0    2.1  1  PF03965.11 Penicillinase repressor
       0.06   13.0   0.0       0.63    9.7   0.0    2.3  2  PF09862.4  Protein of unknown function (DUF2089)


Domain annotation for each model (and alignments):
>> PF03965.11  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.7e-05      0.18      19      99 ..     229     314 ..     220     322 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.7e-05
                 EHHHHHHCHHHHCS--HHHHHHHHHHCCCTTSEEEEE----EEEEE.....S-SSSTT-----XXXXXXXXXXXXXXXXXXXXXXX CS
  PF03965.11  19 tvkevveeleeerelaysTVktllrrLvkKgllsrekegrafiYsp.....lvseeeavasavkqlldrlfegsvkelvaafveee 99 
                 + + +++ l+e++++ays +ktll rL   g l++ ++++ +  +       v+  +a+++ + +l++r+   ++++++  f+++e
  MMETSP0890-20130614|1240_1 229 QPNALISDLAERYGVAYSDIKTLLHRLSMDGSLQAWRKEKGIPAHIkddlfIVRYAKAMQEVTTELVQRIPYAKRRAVIKYFIDKE 314
                 66788999*************************99988877621111111134445666777777777777777777777777775 PP

>> PF09862.4  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.096   6.6e+02      32      73 ..     214     255 ..     209     274 .. 0.84
   2 ?    9.7   0.0   9.2e-05      0.63      46      84 ..     433     471 ..     425     501 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.096
   PF09862.4  32 arLteeqlefvelfikarGnikevekelgisYptvrnrLdev 73 
                 +r+++ q  + e +++    i ++++  g++Y  +++ L ++
  MMETSP0890-20130614|1240_1 214 TRIPAAQAVLSEFLVQPNALISDLAERYGVAYSDIKTLLHRL 255
                 66777778888889999999***************9988876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 9.2e-05
   PF09862.4  46 ikarGnikevekelgi.sYptvrnrLdevlaalgleeeee 84 
                  k+rG++kevek+l+i s ++++ + +++ + l +  e++
  MMETSP0890-20130614|1240_1 433 KKVRGDLKEVEKQLEInSSNALKRQKETLKEMLVA-IEDK 471
                 599*************4445555555555555544.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.35u 0.41s 00:00:01.76 Elapsed: 00:00:01.29
# Mc/sec: 1735.04
//
Query:       MMETSP0890-20130614|1249_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-16   59.3   0.0    2.8e-16   59.2   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    3.9e-05   23.2   0.0    8.7e-05   22.0   0.0    1.6  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   4.1e-20   2.8e-16      11      72 ..       2      64 .]       1      64 [] 0.54

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 4.1e-20
   PF13306.1 11 cknltsitipssvtsIgeyaFsncsslk.sitlpsslteigeyaFsncssltsitipssltsi 72
                c++lt++t+p  +++I++yaF +c+sl  ++tlp  lt+ig yaF +c+slt++t+p  lt+i
  MMETSP0890-20130614|1249_1  2 CTSLTQLTLPAGLITIDAYAFDGCTSLIiQLTLPADLTTIGGYAFRDCTSLTQLTLPAGLTTI 64
                556666666666666666666666663335666666666666666666666666666655554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.3e-08   8.7e-05       2      56 ..       4      57 ..       3      59 .. 0.96

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.3e-08
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLk.vLdLsgnnlksispeafkgLpsLreLnL 56
                +L+ L L    l +i+  aF g+++L   L L    l++i   af +++sL++L L
  MMETSP0890-20130614|1249_1  4 SLTQLTLPAG-LITIDAYAFDGCTSLIiQLTLP-ADLTTIGGYAFRDCTSLTQLTL 57
                8999******.***************99*****.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:00.78
# Mc/sec: 196.62
//
Query:       MMETSP0890-20130614|1251_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   47.3   0.2    3.8e-12   46.2   0.1    1.5  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
       0.08   12.6   0.9       0.15   11.8   0.6    1.4  1  PF10910.3  Protein of unknown function (DUF2744)


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   5.5e-16   3.8e-12       4     114 ..     206     318 ..     203     323 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 5.5e-16
                 XXXXEEEEEEEEET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE......EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHH CS
  PF00665.21   4 rpgelwqiDvtpgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggke...pkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnr 114
                 + ge + +D +++   s+ g+   lta+ + sr+ + +++kd  saet+++++  + ++++ ++   +k+++ D  s+  s+++ ++l++++i  k ++++  qd+g+vE  +r
  MMETSP0890-20130614|1251_1 206 EAGECVTTDSIYMTQTSHRGNDKALTAVCVKSRVPFSYPHKDN-SAETMIKAFAYFRRKFFKESgrhIKVITFDALSTNLSARVDEWLARHDIVRKPAPAGIHQDQGIVEGHFR 318
                 67889999999999999999***********************.99999999999999999888999*******************************************9998 PP

>> PF10910.3  Protein of unknown function (DUF2744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   2.1e-05      0.15      52      92 ..      90     130 ..      57     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
   PF10910.3  52 rpvdsklPkqqvikyqapargerstlnsaarWvsidePdpe 92 
                 +p+ s lP++++ k+ a  r+ +++ +saa+W ++   +  
  MMETSP0890-20130614|1251_1  90 PPTASPLPTKAKPKFVANLRNTKHPHVSAAHWPKQVDSNTR 130
                 34559***************************765554544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:01.18
# Mc/sec: 960.57
//
Query:       MMETSP0890-20130614|1250_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.16s 00:00:00.83 Elapsed: 00:00:01.56
# Mc/sec: 583.73
//
Query:       MMETSP0890-20130614|1253_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-18   66.7   0.0    2.4e-18   66.0   0.0    1.3  1  PF00227.21 Proteasome subunit
     0.0031   16.6   0.5      0.013   14.7   0.1    2.1  2  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   3.5e-22   2.4e-18      32     144 ..      59     172 ..      54     201 .. 0.83

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 3.5e-22
                 ESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHS.SGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE.-HHH CS
  PF00227.21  32 skstveKifkiddhigmafaGlaaDartlverarseaqlyrlryg.rpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiG.sgse 144
                  +++++Kif++dd  ++a++Gl +D+  l +r r+ a ++rl++  +++ ++r+++ la+ ++a    +g r +gv+lliag+ ++++p+l+++ p G+++      + G sg+ 
  MMETSP0890-20130614|1253_1  59 YRNETKKIFQVDDGNFIAYTGLRSDGASLLDRGRRAAASERLSFPeKRPLPKRIARTLADTMHAAARGGGNRAYGVHLLIAGLSQQERPELFTVHPGGNIHCSH-HHVLGgSGQS 172
                 46678**************************************8515667789***********************************************9995.5555548754 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.9e-06     0.013       2      20 ..      15      33 ..      14      36 .. 0.87
   2 ?   -0.5   0.0       0.1     7e+02      13      18 ..      65      70 ..      65      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.9e-06
                ---TT--------HHHHHH CS
   PF10584.4  2 DrslTtFSPdGRLfQVEYA 20
                Dr + ++ P GR++Q EYA
  MMETSP0890-20130614|1253_1 15 DREAYVYDPRGRVLQLEYA 33
                777779************9 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.1
                --HHHH CS
   PF10584.4 13 RLfQVE 18
                ++fQV+
  MMETSP0890-20130614|1253_1 65 KIFQVD 70
                79***6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:01.69
# Mc/sec: 406.96
//
Query:       MMETSP0890-20130614|1264_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:01.14
# Mc/sec: 341.74
//
Query:       MMETSP0890-20130614|1262_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:01.12
# Mc/sec: 784.65
//
Query:       MMETSP0890-20130614|1267_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.09   10.6  34.9       0.13   10.1  24.2    1.4  1  PF02724.9  CDC45-like protein
          5    5.3  31.9        5.5    5.1  22.1    1.0  1  PF10243.4  Microtubule-binding protein MIP-T3
        9.5    5.2  25.8         12    4.8  17.9    1.1  1  PF04502.8  Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  24.2   2.8e-05      0.13     106     187 ..       9     110 ..       1     134 [. 0.40

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.8e-05
   PF02724.9 106 dieeelekeeeerdayealvemkeeee.eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl..............................a 187
                 ++eee+e+eeee++  e         e +e++ed+d++dd+++++ +++  +++++d+d++dd+dee+e++++++++ ++ +                              a
  MMETSP0890-20130614|1267_1   9 KVEEEVEEEEEEEEDEE---------EfDEEEEDEDEDDDDDDDDDDDD--DDDDDDDDNDDDEDEEEEKPKKKRKKVDDDEddveeipiddselkdlgsdivprtkrkaalA 110
                 22333222211111111.........11111111111111111111111..12223334444444444444444444443336667777776667777766665555555540 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  22.1    0.0012       5.5     152     280 ..       5     133 ..       1     135 [. 0.84

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0012
   PF10243.4 152 ekeKkkeeekdrekekererkkaserekkekkkdsknkkkdkekekkkeksrksekgkeeerskdeerekeedkgkdretnrakeeeeesrksseksrrssksekkaeseveaskseekktekeskaea 280
                 + +Kk+eee+++e+e+e+++++  e+e+ e + d+ + + d + + + +++ + ++++eee++++++r+k +d++ d e+     +e ++  s    r + k++  ++++ +a+++++k++ ++   ea
  MMETSP0890-20130614|1267_1   5 KAKKKVEEEVEEEEEEEEDEEEFDEEEEDEDEDDDDDDDDDDDDDDDDDDDDNDDDEDEEEEKPKKKRKKVDDDEDDVEEIPIDDSELKDLGSDIVPRTKRKAALASGIGHQAKTKKSKEAAVDDDEEA 133
                 5678888888888888888888777777777666666666669999999999999999999999999999*********99999999999999999*******************99999998877665 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  17.9    0.0027        12     180     291 ..       7     126 ..       2     134 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0027
   PF04502.8 180 ekkeeeeeeeedeelikslslgleseedrrlakdedkedekekkketseksakssssakatdiekksaakkseeessskakkns..........esklkskkalkslvvkkkaapeesksse 291
                 +kk eee eee+ee+ ++ +++ e+e++ +  +d d++d++++ ++ + +  +   ++++++ +kk ++   +e++++++   +          +  +k+k al+s +   +a++++sk+  
  MMETSP0890-20130614|1267_1   7 KKKVEEEVEEEEEEEEDEEEFDEEEEDEDEDDDD-DDDDDDDDDDDDDDDDNDDDEDEEEEKPKKKRKKVDDDEDDVEEIPIDDselkdlgsdiVPRTKRKAALASGIG-HQAKTKKSKEAA 126
                 3444444444444444444444333333333333.22222233344444444444444444445555555555555555554444444455542333344444444443.333344434333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1318  (0.0964014); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                       216  (0.0157987); expected 13.7 (0.001)
Passed Fwd filter:                       126  (0.00921592); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.98u 0.48s 00:00:02.46 Elapsed: 00:00:01.74
# Mc/sec: 187.30
//
Query:       MMETSP0890-20130614|1273_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.32s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|1279_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   89.1   0.0    1.8e-25   88.8   0.0    1.1  1  PF02391.12 MoaE protein


Domain annotation for each model (and alignments):
>> PF02391.12  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   1.3e-29   1.8e-25      37     117 .]       3      83 ..       1      83 [. 0.97

  Alignments for each domain:
  == domain 1    score: 88.8 bits;  conditional E-value: 1.3e-29
                 CT---EEEEEEEE-HHHHHHHHHHHHHHHHHHS---EEEEEEE---EE----SEEEEEE-SSHHHHHHHHHHHHHHHHHHS CS
  PF02391.12  37 degkeverleyeaypemaekeleeiveevkekfpvvrvavvHrlGelkigeaavliavsaaHRkeafealeylidelKkev 117
                  +gk+v  l+yeay  maeke+++++++++e+f + + ++ Hr+Ge+ +g+ +v+iavsa+HR++a++a+++lidelK++v
  MMETSP0890-20130614|1279_1   3 FQGKKVATLSYEAYGGMAEKEMQKLANRAREQFAISKCVILHRIGEVPVGDISVIIAVSAPHRRAALDACSWLIDELKANV 83 
                 689***************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 545.84
//
Query:       MMETSP0890-20130614|1282_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-22   77.5   0.1      6e-22   77.2   0.0    1.1  1  PF01722.13 BolA-like protein
  ------ inclusion threshold ------
      0.042   13.3   0.0      0.049   13.0   0.0    1.1  1  PF02664.10 S-Ribosylhomocysteinase (LuxS)


Domain annotation for each model (and alignments):
>> PF01722.13  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   8.7e-26     6e-22       1      75 []      36     104 ..      35     104 .. 0.97

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 8.7e-26
                 HHHHHH-SE.EEEEE--.........---EEEEEE-GGGTT--HHHHHHHHHHHHHHHGGG.-S-EEEEEE-HHHH CS
  PF01722.13   1 kleaalapeelevedeshkHaghag.eshfkvvivSeaFegksrvkRhrlVyalLkeelkegiHALslktytpeew 75 
                 kl+aal+ e+++v+des      +g +s++++++vS+ F+gk+++++hr+V++++++elk+ +HA++lktytp++w
  MMETSP0890-20130614|1282_1  36 KLRAALEAEHVQVIDES------DGcGSKLQIIVVSKLFQGKMLLAQHRAVNSAISDELKS-VHAFNLKTYTPAKW 104
                 599**************......689**********************************9.************99 PP

>> PF02664.10  S-Ribosylhomocysteinase (LuxS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.1e-06     0.049      42     100 ..      16      73 ..      13     108 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.1e-06
                 CTTB---HHHHHHHHHHHHHHHHHHCT-SS-EEEEEE--------EEEEE----HHHHH CS
  PF02664.10  42 PnkeileekaihtlehllaellrnhanydsveivdisPmGCrtGfYlvvlgepeekevv 100
                 P ke+   k+i   eh +a  lr  ++ ++v+++d s  GC     ++v+++  + +++
  MMETSP0890-20130614|1282_1  16 PEKETAAAKTIVLNEHPIAAKLRAALEAEHVQVIDESD-GCGSKLQIIVVSKLFQGKML 73 
                 8999999****************************985.99888888888776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.98
# Mc/sec: 268.98
//
Query:       MMETSP0890-20130614|1280_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.84
# Mc/sec: 1446.37
//
Query:       MMETSP0890-20130614|1281_1  [L=898]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.14u 0.44s 00:00:01.57 Elapsed: 00:00:01.19
# Mc/sec: 1808.34
//
Query:       MMETSP0890-20130614|1284_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.18   11.2   0.0    1.2  1  PF11000.3 Protein of unknown function (DUF2840)


Domain annotation for each model (and alignments):
>> PF11000.3  Protein of unknown function (DUF2840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.3e-05      0.18      71     123 ..      33      89 ..      28     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
   PF11000.3  71 alqtlpfvrpGge.iLlriegwpkVervleaida...iealgidpadvapdyWrhvh 123
                 +lq++p++ p  e iL ++eg++kVe+  + i +   ++  +++p++ +  +W+ ++
  MMETSP0890-20130614|1284_1  33 NLQQVPGIGPANErILGEAEGEDKVETTHQLIGKflsLKGKDVTPVEHCDMFWHWLA 89 
                 5799******97637889**********99998622257778889998888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.47s 00:00:00.78 Elapsed: 00:00:00.52
# Mc/sec: 562.22
//
Query:       MMETSP0890-20130614|1289_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.1   0.1      0.032   13.8   0.0    1.3  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.4e-06     0.032      67     135 ..      61     131 ..       7     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-06
  PF03407.11  67 ynvllsDvDvvWlrnpfplley.....edaDvlissDnldgttadglknllNsGfffvrptsrskallkkwaek 135
                  +++++D D++   n   + ++     ++aD+++s D  + + ++     +N G+++++ +++++all++++++
  MMETSP0890-20130614|1289_1  61 THIMYIDSDAYLRPNAPSFADFfapygYNADLYLSMDVMSLD-DEFY--KINDGVMVFKVNQANIALLEELSDE 131
                 468899999977666554442234457999999999999844.4444..48*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.79
# Mc/sec: 776.54
//
Query:       MMETSP0890-20130614|1287_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-23   83.2   0.1    2.1e-22   79.4   0.1    2.4  1  PF00069.20 Protein kinase domain
    9.3e-16   57.5   1.5      5e-11   42.0   0.0    2.9  3  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.084   12.2   0.0       0.19   11.1   0.0    1.7  1  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1   4.6e-26   2.1e-22       4     256 ..     163     447 ..     160     449 .. 0.83

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 4.6e-26
                 EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.........HHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--E.......EE------EEE..............CEESS-CSS----GGGS-HHHHH....................TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.........Elkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgel.......kiaDFGlakkl..............eksseklttlvgtreYmAPEvll....................kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 ++ lGsG+f++Vy+++ +k +   A+K++  +++++ +   a r         E++++ kl +H n+v + ++f+ +d++y++ ++v+gg+  +  +    l+++++k +a++i++gl+y+H++++++ DLKp+ +L++  + ++       k++ FG++  +                + e++++ ++ r ++ P  l                     + + + ++ D W+l+v+++e+ltgk + + +           +  ++l++d+       ++l  l  ++l+k+p+kR+ +++++k
  MMETSP0890-20130614|1287_1 163 KRWLGSGAFAHVYQVETNKLK-LEAMKVIILKNQNNYAISDAERiqrlrphviEAHLMIKLgHHANLVGVKAAFQLEDDFYFFHDLVPGGQTLKSTM--SLLTTDQAKIVAYKIAKGLAYIHERSLCFWDLKPSKVLVEiMDADMnpaigavKLSGFGCSGRIgctwayaspqtralLVQPERNDDPCAPRPFLMPVSLSvsfsvnmatiagikinklptHVRLAAESQDQWALAVTIVEMLTGKRVENAH-----------EVPRRLDQDCG------NDLITLAVQCLDKEPEKRPAMRDLVK 447
                 6789**********9988876.678888777766665544444456778************99***************************7774444..688************************************964545589**************99999*99999999998899999999999999999877788899999999********9999999*****************98665555...........22222222222......56777777777777777777776665 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.82   3.7e+03      49     127 ..      54      77 ..      41      91 .. 0.47
   2 !   42.0   0.0   1.1e-14     5e-11       4     153 ..     163     322 ..     160     339 .. 0.78
   3 !   13.6   0.0   5.3e-06     0.024     188     259 .]     390     449 ..     379     449 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.82
                 HHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEES CS
  PF07714.12  49 leeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHr 127
                  +  kim +++   +                                                        e k ++Hr
  MMETSP0890-20130614|1287_1  54 GDKKKIMDQVSKMSVK-------------------------------------------------------ELKAIIHR 77 
                 3333333333333333.......................................................33334443 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 1.1e-14
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHH...HHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET........TTEEEE-----CEES CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefle...eakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee........ekvvkisDfGLardi 153
                 ++ lG+Gaf++V++ + ++ k ++   + +K  ++ a +++   +++     ea++m kl +h n+v + +++  e+ +++  ++v+gG+    L+++  + lt+++   +a++iakG++y+++++l   dL    vL+e            vk+s fG + +i
  MMETSP0890-20130614|1287_1 163 KRWLGSGAFAHVYQVETNKLKLEAMKVIILKNQNNYAISDAerIQRLRPhviEAHLMIKLgHHANLVGVKAAFQLEDDFYFFHDLVPGGQ---TLKST-MSLLTTDQAKIVAYKIAKGLAYIHERSLCFWDLKPSKVLVEImdadmnpaIGAVKLSGFGCSGRI 322
                 678***************5555544445557665533222112333322445*************************************5...55565.666899999999****************************9877788776668999999987766 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 5.3e-06
                 HHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12 188 vWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                  W+  v++ E++t            +v ++ +  +rl   ++c ++l +l  qC+++epe+Rp +++lv+ l
  MMETSP0890-20130614|1287_1 390 QWALAVTIVEMLTGK----------RVENAHEVPRRL--DQDCGNDLITLAVQCLDKEPEKRPAMRDLVKSL 449
                 555555555555522..........222222233333..4679*************************9876 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.2e-05      0.19       2      28 ..      64      92 ..      63      98 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.2e-05
                TT--HHHHHHHHHHTT------..HHHHH CS
  PF02037.22  2 skltVaeLKaeLkkrGLptsGk..KaeLi 28
                sk++V+eLKa+  +  L+t G   Ka+L 
  MMETSP0890-20130614|1287_1 64 SKMSVKELKAIIHRADLSTMGIieKAQLY 92
                9********************99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.41s 00:00:01.29 Elapsed: 00:00:00.88
# Mc/sec: 1369.74
//
Query:       MMETSP0890-20130614|1298_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.86
# Mc/sec: 186.69
//
Query:       MMETSP0890-20130614|1290_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   17.4   0.0     0.0035   16.9   0.0    1.2  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.5e-07    0.0035      82     236 ..      40     209 ..      14     221 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.5e-07
   PF03567.9  82 fifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgr..................lpacyegd.dwsgvsfeeFleclsnla....perernnr.hwapacdlctrmladydlvgcyetle....edlnailrllallnlknvavfgltefprktqtanttrrs.nstrasevevdlseklr 236
                 ++fvRdPfe  +S y++ +      ga +     +++g+                  lp++  +  +w ++s+ e l+ l  ++    ++++ + +  w+ +++  t+   +     c+e+      + ++++l++l+l      ++  l+++++k++t++++ +s  ++ +s+   +  + l+
  MMETSP0890-20130614|1290_1  40 VNFVRDPFEMVVSGYLYHVR-----GAEI---GFMKFGKlgmrggdlrpflwpseygLPSAIANNkEWTDFSYPEYLKKLKPTEgilaESIRVMQWeLWEVVSSVRTTRKYKSMHSVCLEDYFldihDAIRRLLLKLQL------PLSLLGSLEEKMSTKSKNAKShGTRSESNLDEEYRSFLL 209
                 79**************9993.....3333...34444444444445899999*****888888888*********9997766665543333223222466666555544444444456666664333666666666666......667799999988744444443034444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 1062.54
//
Query:       MMETSP0890-20130614|1297_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-40  137.0  14.9    6.4e-15   54.7   0.4    5.5  5  PF13424.1  Tetratricopeptide repeat
    3.6e-21   74.2  17.6      6e-08   32.2   0.0    7.7  8  PF13374.1  Tetratricopeptide repeat
    1.7e-14   53.0   9.7    5.6e-05   22.5   0.7    5.0  4  PF13414.1  TPR repeat
    1.8e-13   49.3  10.7     0.0051   16.2   0.0    6.7  7  PF00515.23 Tetratricopeptide repeat
    6.6e-10   38.0  18.8      0.028   14.1   0.2    7.4  8  PF07719.12 Tetratricopeptide repeat
    1.4e-07   30.8   0.0    2.8e-06   26.5   0.0    2.4  1  PF00069.20 Protein kinase domain
    1.5e-06   27.4  11.6       0.67    9.7   0.1    6.0  6  PF13176.1  Tetratricopeptide repeat
     0.0011   18.4   4.4         21    5.1   0.1    6.1  6  PF13181.1  Tetratricopeptide repeat
     0.0016   18.9  15.0       0.65   10.6   0.4    4.4  3  PF13432.1  Tetratricopeptide repeat
     0.0046   16.0   0.1       0.29   10.0   0.0    2.4  2  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.022   14.7   7.9       0.26   11.3   0.4    3.4  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.042   12.8   6.3        0.2   10.5   0.1    3.9  5  PF00244.15 14-3-3 protein
      0.072   11.9   2.1       0.32    9.7   0.1    2.6  3  PF12753.2  Nuclear pore complex subunit Nro1
        9.4    7.0  18.8         12    6.7   0.0    6.2  5  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   1.7e-06    0.0017      19      54 ..     469     505 ..     449     512 .. 0.86
   2 !   54.7   0.4   6.6e-18   6.4e-15       8      77 ..     500     572 ..     499     573 .. 0.96
   3 !   36.3   0.0   3.7e-12   3.6e-09       1      76 [.     579     655 ..     579     657 .. 0.95
   4 !   32.0   0.7   7.8e-11   7.6e-08       4      54 ..     664     715 ..     662     717 .. 0.96
   5 !    7.4   0.0    0.0038       3.7      22      50 ..     729     758 ..     726     763 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.7e-06
   PF13424.1  19 gdydeAlelyekalel.lrelgddhpdtaralnnlan 54 
                  +  +A+ +y+++l+l +r++g  h+ +a al nla 
  MMETSP0890-20130614|1297_1 469 DNMRRAEFHYNQCLKLtQRRFGTSHAAYALALDNLAG 505
                 67889******************************96 PP

  == domain 2    score: 54.7 bits;  conditional E-value: 6.6e-18
   PF13424.1   8 lnnlalvlr.rlgdydeAlelyekalel.lrelgdd.hpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 l+nla++l   +++  eAl l+e+al++ ++ lg++ hp +a++l n a++yl++g++deA + + kA  i+e
  MMETSP0890-20130614|1297_1 500 LDNLAGFLVtIQRRTNEALPLFEEALNIrQENLGEHmHPAVANSLVNVAEIYLEYGRLDEAHDAYSKAFSIRE 572
                 89*******9******************9999**977*********************************998 PP

  == domain 3    score: 36.3 bits;  conditional E-value: 3.7e-12
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 hp++a++l+ l+ v +++ +  eA++ly++al +     g+++  ++ +l  la++ l+  dyd+A +++ ++ +ia
  MMETSP0890-20130614|1297_1 579 HPSVAATLCGLGAVAKEKANINEAETLYRRALSVaVNACGPEDMAVVPVLEGLADCRLEVRDYDAASKLYGRVAKIA 655
                 899*******************************55556**********************************9997 PP

  == domain 4    score: 32.0 bits;  conditional E-value: 7.8e-11
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlan 54 
                 +a++ln+ a + + + ++ eA+++y++al++ + +lg +h dta +l+nla 
  MMETSP0890-20130614|1297_1 664 YAAALNRRAVISQLQARHSEAEQFYKRALTVrIHSLGTTHIDTAQSLYNLAV 715
                 6899**********************************************95 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0038
   PF13424.1  22 deAlelyekalel.lrelgddhpdtaraln 50 
                  eA +l+++al +   +lg dhp t+r+  
  MMETSP0890-20130614|1297_1 729 NEAKKLLKHALLIiDNQLGSDHPMTLRVRD 758
                 79***********9999*******998765 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.7   1.6e+03      24      41 ..     477     494 ..     467     495 .. 0.82
   2 !   20.5   0.2   2.8e-07   0.00028       2      37 ..     497     533 ..     496     538 .. 0.89
   3 !   32.2   0.0   6.2e-11     6e-08       1      41 [.     540     580 ..     540     581 .. 0.98
   4 !    8.9   0.1    0.0013       1.2       1      39 [.     582     620 ..     582     622 .. 0.92
   5 ?    1.8   0.0      0.22   2.2e+02      15      35 ..     638     658 ..     631     660 .. 0.86
   6 !   13.6   0.3   4.4e-05     0.043       2      42 .]     665     705 ..     664     705 .. 0.95
   7 ?   -0.7   0.0       1.3   1.3e+03       1      14 [.     706     719 ..     706     720 .. 0.83
   8 ?    2.0   0.0      0.19   1.9e+02      19      41 ..     729     751 ..     727     752 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.7
   PF13374.1  24 leeealairrrllGddHP 41 
                 ++ ++l + +r +G  H+
  MMETSP0890-20130614|1297_1 477 HYNQCLKLTQRRFGTSHA 494
                 7889**********9996 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.8e-07
   PF13374.1   2 aaalnnLAlalrar.gryeeAlaleeealairrrllG 37 
                 a al nLA  l +  +r++eAl+l+eeal ir++ lG
  MMETSP0890-20130614|1297_1 497 ALALDNLAGFLVTIqRRTNEALPLFEEALNIRQENLG 533
                 789******999999*****************98666 PP

  == domain 3    score: 32.2 bits;  conditional E-value: 6.2e-11
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +a +l n+A ++ + gr++eA + + +a +ir+r lG +HP
  MMETSP0890-20130614|1297_1 540 VANSLVNVAEIYLEYGRLDEAHDAYSKAFSIRERALGKNHP 580
                 799*************************************9 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0013
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGdd 39 
                 +aa+l  L+ +  +  + +eA+ l+++al++    +G++
  MMETSP0890-20130614|1297_1 582 VAATLCGLGAVAKEKANINEAETLYRRALSVAVNACGPE 620
                 799999999999******************999999985 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.22
   PF13374.1  15 rgryeeAlaleeealairrrl 35 
                  ++y++A +l+ +++ i   +
  MMETSP0890-20130614|1297_1 638 VRDYDAASKLYGRVAKIANTH 658
                 589***********9998776 PP

  == domain 6    score: 13.6 bits;  conditional E-value: 4.4e-05
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 aaaln  A++ + + r+ eA++++ +al++r   lG  H d
  MMETSP0890-20130614|1297_1 665 AAALNRRAVISQLQARHSEAEQFYKRALTVRIHSLGTTHID 705
                 8999999999*****************************87 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 1.3
   PF13374.1   1 taaalnnLAlalra 14 
                 ta +l nLA+  ++
  MMETSP0890-20130614|1297_1 706 TAQSLYNLAVFIFD 719
                 899******87665 PP

  == domain 8    score: 2.0 bits;  conditional E-value: 0.19
   PF13374.1  19 eeAlaleeea.lairrrllGddHP 41 
                 +eA +l+  a l+i  +l G dHP
  MMETSP0890-20130614|1297_1 729 NEAKKLLKHAlLIIDNQL-GSDHP 751
                 689899999846666665.****9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0017       1.7      39      67 ..     452     484 ..     438     486 .. 0.85
   2 !   22.5   0.7   5.8e-08   5.6e-05       3      68 ..     497     571 ..     495     572 .. 0.83
   3 !   14.6   0.1   1.7e-05     0.016       3      66 ..     583     653 ..     577     656 .. 0.83
   4 !    9.6   0.1   0.00063      0.62       3      44 ..     665     714 ..     663     738 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0017
   PF13414.1  39 lyynlAlaylklg....kdyeeAledyekAlel 67 
                 l+++lA++++++     ++ ++A  +y+++l+l
  MMETSP0890-20130614|1297_1 452 LHSRLAHLFERMTtttaDNMRRAEFHYNQCLKL 484
                 89**********55555889***********98 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 5.8e-08
   PF13414.1   3 AealkelGnalfk.egdydeAieayekAleld.........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 A+al +l+  l + +++  eA+ ++e+Al ++         p  a+ + n A +yl+ g + +eA ++y+kA +++
  MMETSP0890-20130614|1297_1 497 ALALDNLAGFLVTiQRRTNEALPLFEEALNIRqenlgehmhPAVANSLVNVAEIYLEYG-RLDEAHDAYSKAFSIR 571
                 6777777777777577899***********9755555666688899*************.589*********9875 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 1.7e-05
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAle 66 
                 A +l  lG ++ ++ +  eA+ +y++Al+       p++     ++ +lA + l+   dy++A + y ++ +
  MMETSP0890-20130614|1297_1 583 AATLCGLGAVAKEKANINEAETLYRRALSVAvnacgPEDMAvvpVLEGLADCRLEVR-DYDAASKLYGRVAK 653
                 77888899999******************864445566644688***********98.8****998877766 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00063
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld........pnnaelyynlA 44 
                 A al++++     + ++ eA+++y++Al  +         ++a+ +ynlA
  MMETSP0890-20130614|1297_1 665 AAALNRRAVISQLQARHSEAEQFYKRALTVRihslgtthIDTAQSLYNLA 714
                 8999************************7643333333234577888877 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.25   2.4e+02      17      30 ..     471     484 ..     468     485 .. 0.86
   2 ?    4.3   0.0     0.029        29      14      34 .]     511     531 ..     507     531 .. 0.87
   3 !   14.8   0.1   1.4e-05     0.014       1      31 [.     541     571 ..     541     573 .. 0.90
   4 !   11.3   0.1   0.00019      0.19       1      30 [.     583     612 ..     583     615 .. 0.94
   5 ?    1.9   0.0      0.17   1.6e+02       6      30 ..     630     654 ..     626     658 .. 0.85
   6 !   16.2   0.0   5.2e-06    0.0051       1      30 [.     665     694 ..     665     695 .. 0.95
   7 ?   -3.2   0.0       6.9   6.7e+03       1       9 [.     707     715 ..     707     715 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHH CS
  PF00515.23  17 ydeAleyyekALel 30 
                    A+ +y+++L+l
  MMETSP0890-20130614|1297_1 471 MRRAEFHYNQCLKL 484
                 6689********98 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.029
                 TT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  14 lgkydeAleyyekALelnPnn 34 
                 + + +eAl  +e+AL ++ +n
  MMETSP0890-20130614|1297_1 511 QRRTNEALPLFEEALNIRQEN 531
                 67889**********998765 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 a++l n + +yl+ g++deA ++y+kA +++
  MMETSP0890-20130614|1297_1 541 ANSLVNVAEIYLEYGRLDEAHDAYSKAFSIR 571
                 5678899********************8875 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a +l++lG++  ++ + +eA+  y++AL++
  MMETSP0890-20130614|1297_1 583 AATLCGLGAVAKEKANINEAETLYRRALSV 612
                 6789************************86 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.17
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALel 30 
                 +l+ + l+  +yd A + y ++ ++
  MMETSP0890-20130614|1297_1 630 GLADCRLEVRDYDAASKLYGRVAKI 654
                 5888999999*********998777 PP

  == domain 6    score: 16.2 bits;  conditional E-value: 5.2e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a al++++++ + + ++ eA+++y++AL++
  MMETSP0890-20130614|1297_1 665 AAALNRRAVISQLQARHSEAEQFYKRALTV 694
                 78**************************86 PP

  == domain 7    score: -3.2 bits;  conditional E-value: 6.9
                 HHHHHHHHH CS
  PF00515.23   1 akalynlGn 9  
                 a++lynl++
  MMETSP0890-20130614|1297_1 707 AQSLYNLAV 715
                 6889**985 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.9   7.7e+03      21      32 ..     335     346 ..     335     346 .. 0.89
   2 ?    1.6   0.0      0.29   2.9e+02      18      31 ..     472     485 ..     468     487 .. 0.83
   3 ?    4.6   0.0     0.032        31      14      32 ..     511     529 ..     504     531 .. 0.86
   4 !   14.1   0.2   2.9e-05     0.028       3      30 ..     543     570 ..     541     574 .. 0.88
   5 !    8.3   0.1    0.0021       2.1       2      29 ..     584     611 ..     583     614 .. 0.91
   6 !    6.6   0.0    0.0074       7.2       4      34 .]     628     658 ..     625     658 .. 0.89
   7 !   10.0   0.2   0.00061      0.59       1      28 [.     665     692 ..     665     695 .. 0.95
   8 ?   -1.4   0.0       2.7   2.7e+03      18      30 ..     729     741 ..     727     744 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7.9
                 HHHHHHHHHH-T CS
  PF07719.12  21 leafekAleldP 32 
                 +e+++ A +l P
  MMETSP0890-20130614|1297_1 335 REYLQTAAALSP 346
                 689*****9998 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHH- CS
  PF07719.12  18 eeAleafekAleld 31 
                  +A+ +++++l+l 
  MMETSP0890-20130614|1297_1 472 RRAEFHYNQCLKLT 485
                 689********995 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.032
                 TT-HHHHHHHHHHHHHH-T CS
  PF07719.12  14 lgdyeeAleafekAleldP 32 
                 +++ +eAl +fe+Al +  
  MMETSP0890-20130614|1297_1 511 QRRTNEALPLFEEALNIRQ 529
                 67889**********9865 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  l n +++y++ g+++eA++a+ kA ++
  MMETSP0890-20130614|1297_1 543 SLVNVAEIYLEYGRLDEAHDAYSKAFSI 570
                 67899********************887 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                   l+ lG ++ ++ + +eA+ ++++Al+
  MMETSP0890-20130614|1297_1 584 ATLCGLGAVAKEKANINEAETLYRRALS 611
                 67899*********************97 PP

  == domain 6    score: 6.6 bits;  conditional E-value: 0.0074
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 l  l+++ ++ +dy+ A +++ ++ +++ ++
  MMETSP0890-20130614|1297_1 628 LEGLADCRLEVRDYDAASKLYGRVAKIANTH 658
                 66799********************998775 PP

  == domain 7    score: 10.0 bits;  conditional E-value: 0.00061
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAl 28 
                 a al++++ +   + ++ eA++++++Al
  MMETSP0890-20130614|1297_1 665 AAALNRRAVISQLQARHSEAEQFYKRAL 692
                 689************************9 PP

  == domain 8    score: -1.4 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHH CS
  PF07719.12  18 eeAleafekAlel 30 
                 +eA+++++ Al +
  MMETSP0890-20130614|1297_1 729 NEAKKLLKHALLI 741
                 79*******9965 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.8e-09   2.8e-06      40     120 ..     122     221 ..      89     420 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.8e-09
                 HHHHHHHH..............HHHHHHHH.H-TTB--EEEEEEE.STEEEEEEE--SC-...EHH.HHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE CS
  PF00069.20  40 kkektavr..............Elkilkkl.sHpnivkllevfee.kdelylvleyvegg...dlf.dllkkegklseeeikkialqilegleylHsngii 120
                 ++++++++              E+ ++ +l sHpni  +l+++   +++l+++ e++ ++     + +++ + g ls+ ++ +i l+i++g+ + Hs+g++
  MMETSP0890-20130614|1297_1 122 SERNKSQQftkkgelqmtkwliEADVMLRLgSHPNIAAFLDAYLIsNNQLCFFREICGETpalL-SeAYVPEGGILSTVTAITIGLKIARGIVHAHSRGVT 221
                 2222222245666777777889********99*********99766999********8875422.2356669**************************997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   2.4e+03       3      30 ..     454     486 ..     452     490 .. 0.68
   2 !    7.1   0.0    0.0049       4.7       1      33 [.     499     532 ..     499     534 .. 0.90
   3 ?   -0.7   0.1       1.5   1.4e+03       1      24 [.     543     566 ..     543     577 .. 0.77
   4 ?    5.6   0.1     0.014        14       1      28 [.     585     612 ..     585     617 .. 0.84
   5 !    7.4   0.0    0.0039       3.8       4      30 ..     630     656 ..     627     662 .. 0.83
   6 !    9.7   0.1   0.00068      0.67       1      30 [.     667     694 ..     667     701 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.5
   PF13176.1   3 lnLarlysr.....lgdyekAielyeraLaltk 30 
                 ++La+l++r       ++++A+ +y ++L+lt+
  MMETSP0890-20130614|1297_1 454 SRLAHLFERmttttADNMRRAEFHYNQCLKLTQ 486
                 678888877666666677777777777777765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0049
   PF13176.1   1 allnLarlysr.lgdyekAielyeraLaltkdpl 33 
                 al+nLa   +  ++++ +A+ l+e+aL ++++ l
  MMETSP0890-20130614|1297_1 499 ALDNLAGFLVTiQRRTNEALPLFEEALNIRQENL 532
                 799**********************998887765 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.5
   PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                 +l+n a++y + g+ ++A ++y +
  MMETSP0890-20130614|1297_1 543 SLVNVAEIYLEYGRLDEAHDAYSK 566
                 688999999999998888776655 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.014
   PF13176.1   1 allnLarlysrlgdyekAielyeraLal 28 
                 +l+ L+ +  +  +  +A++ly+raL +
  MMETSP0890-20130614|1297_1 585 TLCGLGAVAKEKANINEAETLYRRALSV 612
                 6888999999999999********7754 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0039
   PF13176.1   4 nLarlysrlgdyekAielyeraLaltk 30 
                  La++  +++dy+ A +ly r  ++++
  MMETSP0890-20130614|1297_1 630 GLADCRLEVRDYDAASKLYGRVAKIAN 656
                 69******************9666655 PP

  == domain 6    score: 9.7 bits;  conditional E-value: 0.00068
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 al++ a++ + + ++++A+++y+r  alt 
  MMETSP0890-20130614|1297_1 667 ALNRRAVISQLQARHSEAEQFYKR--ALTV 694
                 78999999999*************..5553 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.084        82      16      32 ..     470     486 ..     467     489 .. 0.84
   2 ?   -1.8   0.0       3.3   3.2e+03      18      32 ..     515     529 ..     513     531 .. 0.79
   3 ?    5.1   0.1     0.021        21       2      31 ..     542     571 ..     541     574 .. 0.90
   4 ?    2.1   0.0      0.18   1.8e+02       3      29 ..     585     611 ..     583     613 .. 0.86
   5 ?    0.9   0.0      0.46   4.5e+02       7      33 ..     631     657 ..     625     658 .. 0.81
   6 ?    2.0   0.0       0.2   1.9e+02       3      29 ..     667     693 ..     665     695 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.084
                 -HHHHHHHHH---HHHH CS
   PF13181.1  16 dydkAkeylekalelkp 32 
                 ++  A+ +++++l+l +
  MMETSP0890-20130614|1297_1 470 NMRRAEFHYNQCLKLTQ 486
                 8889**********976 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.3
                 HHHHHHHH---HHHH CS
   PF13181.1  18 dkAkeylekalelkp 32 
                  +A+  +e+al + +
  MMETSP0890-20130614|1297_1 515 NEALPLFEEALNIRQ 529
                 689999****98865 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.021
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 +++ n ++iY++ G+ d+A  ++ ka ++ 
  MMETSP0890-20130614|1297_1 542 NSLVNVAEIYLEYGRLDEAHDAYSKAFSIR 571
                 778999********************9986 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.18
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 +++ lG + +++ ++ +A+  +++al+
  MMETSP0890-20130614|1297_1 585 TLCGLGAVAKEKANINEAETLYRRALS 611
                 67778889999**************98 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.46
                 ---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekalelkpr 33 
                 l+d+ ++  dyd+A + + ++ +++++
  MMETSP0890-20130614|1297_1 631 LADCRLEVRDYDAASKLYGRVAKIANT 657
                 6777777789************99985 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.2
                 -TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekale 29 
                 a+++++ i     ++++A++++++al 
  MMETSP0890-20130614|1297_1 667 ALNRRAVISQLQARHSEAEQFYKRALT 693
                 6667777777777899*********96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.4   0.00066      0.65      10      54 ..     511     564 ..     502     568 .. 0.91
   2 !    9.1   1.0    0.0019       1.9       4      59 ..     548     611 ..     548     621 .. 0.85
   3 !    8.4   2.0    0.0032       3.1       7      58 ..     635     692 ..     630     700 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00066
   PF13432.1  10 aGdydeAlaaleaalala.........PeaaeallllaeallrlgrldeAaall 54 
                 +++  eAl+++e+al            P  a+ l + ae++l+ grldeA  ++
  MMETSP0890-20130614|1297_1 511 QRRTNEALPLFEEALNIRqenlgehmhPAVANSLVNVAEIYLEYGRLDEAHDAY 564
                 57899*************9******************************97555 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0019
   PF13432.1   4 ArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59 
                 A+ +l+ G++deA +a+++a            P  a  l +l+ ++ ++ +  eA+ l+r+al+
  MMETSP0890-20130614|1297_1 548 AEIYLEYGRLDEAHDAYSKAFSIReralgknhPSVAATLCGLGAVAKEKANINEAETLYRRALS 611
                 567888899********65555555999999*******************************93 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0032
   PF13432.1   7 llraGdydeAlaaleaalala......PeaaeallllaeallrlgrldeAaallraal 58 
                 +l+ +dyd+A +++ ++ + a        +a al ++a++   + r+ eA++++++al
  MMETSP0890-20130614|1297_1 635 RLEVRDYDAASKLYGRVAKIAnthgvmATYAAALNRRAVISQLQARHSEAEQFYKRAL 692
                 57889****************99655444***************************98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0003      0.29      41     122 ..     134     218 ..      95     226 .. 0.81
   2 ?    3.3   0.0     0.035        34     229     259 .]     390     420 ..     380     420 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0003
                 BHHHHHHHHHHHHHHHHT.-BTTB--BEEEBE.SSSSEEEEEE---B-.-HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHT CS
  PF07714.12  41 eeeekeefleeakimkkl.khpnivkllgvct.keepllivteyvkgG.dLlefLrkkekekltlkdllkfalqiakGmeyLesk 122
                  e + ++ l ea++m +l +hpni  +l +++ ++++l++  e + +   Ll+     e   l++ + + + l+ia+G+ + +s+
  MMETSP0890-20130614|1297_1 134 GELQMTKWLIEADVMLRLgSHPNIAAFLDAYLiSNNQLCFFREICGETpALLSEAYVPEGGILSTVTAITIGLKIARGIVHAHSR 218
                 3445788899*******************99978888********8876666655555689999999999999999999887776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.035
                 TSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12 229 kcpeelyelmkqCweeepeeRptfkelvekl 259
                 ++ ++ ++l+ qC + +p+eRp ++++v +l
  MMETSP0890-20130614|1297_1 390 EIRRKCNTLILQCRNDRPAERPGINTIVARL 420
                 56678899******************99876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00027      0.26       4      84 .]     470     567 ..     467     567 .. 0.81
   2 ?    5.4   0.9     0.019        18       3      57 ..     639     698 ..     595     716 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00027
                 -HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---H........HHHHHHHHC.TSHCHCBHHHHH........HH.HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2   4 nyknAlflaekllaespkdp.edaylyalAlclylngey........krAyellrk.leldssslgcry........ll.ArcllklgkydeAiavLeka 84 
                 n + A+f++++ l++++++   + ++y  Al+l +++ +        ++A+ l+++ l+++ ++lg ++        +  A+ +l+ g++deA +++ ka
  MMETSP0890-20130614|1297_1 470 NMRRAEFHYNQCLKLTQRRFgTSHAAY--ALALDNLAGFlvtiqrrtNEALPLFEEaLNIRQENLGEHMhpavanslVNvAEIYLEYGRLDEAHDAYSKA 567
                 6789*************9767666777..88888887777777777899*****999888888877777666677767679**************99885 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.019
                 T-HHHHHHHHHHHCCC-ST....-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
   PF12895.2   3 hnyknAlflaekllaespk....dpedaylyalAlclylngeykrAyellrk.leldsss 57 
                 ++y+ A +l+ ++ + +++     + +a+l + A   +l++++ +A +++++ l ++ +s
  MMETSP0890-20130614|1297_1 639 RDYDAASKLYGRVAKIANThgvmATYAAALNRRAVISQLQARHSEAEQFYKRaLTVRIHS 698
                 455666666666666655443332133333335556666666666666665555555555 PP

>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.6   2.5e+03     134     151 ..     116     133 ..      91     163 .. 0.56
   2 ?    1.3   0.0      0.13   1.3e+02     139     198 ..     468     527 ..     459     539 .. 0.83
   3 ?    0.5   0.0      0.24   2.4e+02     142     165 ..     557     580 ..     544     586 .. 0.88
   4 ?   -1.6   0.0         1     1e+03     137     159 ..     594     616 ..     585     623 .. 0.82
   5 ?   10.5   0.1    0.0002       0.2     139     201 ..     678     740 ..     665     751 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.6
                 ---CHHHHHHHHHHHHHH CS
  PF00244.15 134 sgeerkeaaekaleaYke 151
                 +++++++  +k+++  k+
  MMETSP0890-20130614|1297_1 116 HNDQNESERNKSQQFTKK 133
                 233333334444444444 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHS-TT-TTT---HHHHHHHHHHTSS-HHHHHHHHHHHHHH CS
  PF00244.15 139 keaaekaleaYkeAleiaeselkpthpirLglaLnfsVFyYEilnspekAcelakqafde 198
                  + + +a+  Y++ l+++++++ ++h+ +     n + F+  i + +++A  l ++a++ 
  MMETSP0890-20130614|1297_1 468 ADNMRRAEFHYNQCLKLTQRRFGTSHAAYALALDNLAGFLVTIQRRTNEALPLFEEALNI 527
                 5667889999**********9999998886555599******************999975 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHS-TT-T CS
  PF00244.15 142 aekaleaYkeAleiaeselkpthp 165
                  ++a++aY++A +i e+ l + hp
  MMETSP0890-20130614|1297_1 557 LDEAHDAYSKAFSIRERALGKNHP 580
                 6899*************9999998 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1
                 CHHHHHHHHHHHHHHHHHHHHHH CS
  PF00244.15 137 erkeaaekaleaYkeAleiaese 159
                 ++k+ +++a++ Y++Al++a + 
  MMETSP0890-20130614|1297_1 594 KEKANINEAETLYRRALSVAVNA 616
                 6788999**********999775 PP

  == domain 5    score: 10.5 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHHS-TT-TTT---HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHT CS
  PF00244.15 139 keaaekaleaYkeAleiaeselkpthpirLglaLnfsVFyYEilnspekAcelakqafdeaia 201
                 ++  ++a++ Yk+Al++  ++l +th        n +VF +++ + +   ++ ak+ +++a+ 
  MMETSP0890-20130614|1297_1 678 QARHSEAEQFYKRALTVRIHSLGTTHIDTAQSLYNLAVFIFDTPKATVTKINEAKKLLKHALL 740
                 556789************************************988877777777666666655 PP

>> PF12753.2  Nuclear pore complex subunit Nro1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00033      0.32     100     160 ..     493     553 ..     484     559 .. 0.82
   2 ?    2.0   0.0     0.072        71     351     382 ..     542     568 ..     517     579 .. 0.79
   3 ?   -1.3   0.1      0.74   7.3e+02     101     144 ..     662     704 ..     658     719 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHTHHHHGGGS-SS--HHHHHHHHH..HHH--------H.HHHHHHHHHHHH CS
   PF12753.2 100 haiYalALselaifkeeeeerkkeekveeffdaAle..raelGlakspdsvrLklakakillq 160
                 ha+YalAL +la f  + +   ++++    f++Al+  + +lG++ +p   + ++  a i+l+
  MMETSP0890-20130614|1297_1 493 HAAYALALDNLAGFLVTIQR--RTNEALPLFEEALNirQENLGEHMHPAVANSLVNVAEIYLE 553
                 **************998888..67788899****97425679999999888888888888876 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.072
                 THHHHHHHHHHHHHHH-SSHHH.HHHHHHHHH CS
   PF12753.2 351 etwvkvAeamidLgnlyeveskeQeklykeAe 382
                 +++v+vAe+++++g l e+ ++     y++A 
  MMETSP0890-20130614|1297_1 542 NSLVNVAEIYLEYGRLDEAHDA-----YSKAF 568
                 689*************887766.....55554 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHHTHHHHGGGS-SS--HHHHHHHHH.HH.H------ CS
   PF12753.2 101 aiYalALselaifkeeeeerkkeekveeffdaAle.ra.elGlaks 144
                 a Ya AL+  a+  + +     + + e+f++ Al  r+ +lG  + 
  MMETSP0890-20130614|1297_1 662 ATYAAALNRRAVISQLQAR---HSEAEQFYKRALTvRIhSLGTTHI 704
                 7899999999998888777...788999999988534414565555 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.49   4.8e+02       3      34 ..     499     531 ..     497     535 .. 0.78
   2 ?    6.7   0.0     0.012        12       6      29 ..     546     569 ..     541     587 .. 0.84
   3 ?    5.1   0.1      0.04        39       4      30 ..     586     612 ..     582     628 .. 0.79
   4 ?    1.0   0.1      0.83   8.1e+02       6      34 ..     630     658 ..     625     670 .. 0.77
   5 ?    1.3   0.3      0.65   6.3e+02       2      28 ..     666     692 ..     665     697 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.49
   PF13428.1   3 allalaralla.lGdpdeAiallrralalaPdd 34 
                 al  la +l   + ++ eA+ l+++al    ++
  MMETSP0890-20130614|1297_1 499 ALDNLAGFLVTiQRRTNEALPLFEEALNIRQEN 531
                 67778888875377899*********9776665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.012
   PF13428.1   6 alarallalGdpdeAiallrrala 29 
                   a+++l+ G++deA +++ +a +
  MMETSP0890-20130614|1297_1 546 NVAEIYLEYGRLDEAHDAYSKAFS 569
                 6799****************9976 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.04
   PF13428.1   4 llalarallalGdpdeAiallrralal 30 
                 l  l+++  +  +  eA+ l+rral+ 
  MMETSP0890-20130614|1297_1 586 LCGLGAVAKEKANINEAETLYRRALSV 612
                 457899999999************984 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.83
   PF13428.1   6 alarallalGdpdeAiallrralalaPdd 34 
                  la+  l+  d+d+A +l+ r+++ a ++
  MMETSP0890-20130614|1297_1 630 GLADCRLEVRDYDAASKLYGRVAKIANTH 658
                 6888889999**********998877665 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.65
   PF13428.1   2 eallalarallalGdpdeAiallrral 28 
                 +al ++a +   + ++ eA++ ++ral
  MMETSP0890-20130614|1297_1 666 AALNRRAVISQLQARHSEAEQFYKRAL 692
                 6777888888889999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.31u 0.40s 00:00:01.71 Elapsed: 00:00:01.36
# Mc/sec: 1430.77
//
Query:       MMETSP0890-20130614|1303_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-48  164.3   6.1    1.6e-48  164.2   4.2    1.0  1  PF03357.16 Snf7
    4.1e-05   23.1   4.5       0.59    9.8   0.0    3.4  3  PF01920.15 Prefoldin subunit
    0.00028   20.9   7.3      0.021   14.9   3.0    2.8  3  PF05531.7  Nucleopolyhedrovirus P10 protein
    0.00031   19.3   5.3    0.00044   18.8   3.7    1.1  1  PF05701.6  Plant protein of unknown function (DUF827)
     0.0019   16.6   2.7     0.0025   16.2   1.9    1.2  1  PF13166.1  AAA domain
     0.0029   16.5   0.2     0.0035   16.2   0.1    1.1  1  PF09015.5  NgoMIV restriction enzyme
     0.0068   15.3   3.1       0.01   14.8   2.1    1.2  1  PF08202.6  Mis12-Mtw1 protein family
  ------ inclusion threshold ------
      0.048   12.8   4.1       0.14   11.3   1.5    2.0  2  PF06120.6  Tail length tape measure protein
       0.19   11.4   8.4       0.38   10.4   0.6    2.3  2  PF12718.2  Tropomyosin like
        0.2   10.9   4.0        1.2    8.3   2.8    2.1  2  PF10018.4  Vitamin-D-receptor interacting Mediator subunit 4
       0.32   10.7   6.9        0.2   11.4   2.1    2.4  3  PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
       0.33   11.2   2.5         10    6.4   0.0    3.0  3  PF09278.6  MerR, DNA binding
        0.4   10.1   2.1        2.9    7.3   1.4    2.1  1  PF04156.9  IncA protein
       0.43   10.1   9.7        3.9    7.1   1.7    2.9  2  PF07926.7  TPR/MLP1/MLP2-like protein
       0.54    8.7   8.3        2.3    6.6   1.6    2.1  2  PF08317.6  Spc7 kinetochore protein
       0.64    9.9   5.0       0.65    9.8   2.4    1.7  2  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
       0.76    9.3   9.6        1.5    8.4   0.7    2.7  2  PF12325.3  TATA element modulatory factor 1 TATA binding
        1.5    8.5   8.0        1.6    8.4   0.3    2.9  3  PF12329.3  TATA element modulatory factor 1 DNA binding
        1.5    8.6  10.4        3.6    7.3   2.4    2.2  2  PF03938.9  Outer membrane protein (OmpH-like)
        1.7    7.3   5.7        2.1    7.0   3.6    1.3  1  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   4.2   2.3e-51   1.6e-48       2     169 ..      13     204 ..      12     213 .. 0.94

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 2.3e-51
  PF03357.16   2 ailsLrkaerelekkqeslekkikkleaelkklakkgn..........kdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrslddadeedEeeldaeLdaLeqelgdeel..............esvelpsvPse 169
                 +++ L +a  +++ +   l++kikkle el  +++k +          k+rA+ +Lk+kk+ye+q+dql gq +n+eq +++i++ k++ ++++amk + k++k+  kk++idkid+l+d+++d+me+++e++++l+rs+d ++++dE++ldaeL+aL ++l +e +              e+ +lp+ P++
  MMETSP0890-20130614|1303_1  13 PPPTLGDAGAKVDSRVAALDEKIKKLEVELSGYKEKLKrargpaqktlKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTEFKKVNIDKIDDLQDDLADMMEDMNEVQDVLGRSYDVGEDIDEADLDAELEALGDDLDAELElddadstpaylqpaEPTNLPEQPTN 204
                 5788999***********************9999998889999999**********************************************************************************************999******************9998889999999999999966666666665 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00086      0.59      63      96 ..      20      53 ..       9      63 .. 0.55
   2 !    7.1   0.1    0.0058         4      12      44 ..      69     101 ..      66     110 .. 0.81
   3 !    6.4   0.1    0.0096       6.6       3      45 ..     123     165 ..     121     170 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00086
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15 63 vkeeLeerketlekeiktlekqleklekeleelk 96
                + ++++ r + l+++ik+le +l+  +++l+  +
  MMETSP0890-20130614|1303_1 20 AGAKVDSRVAALDEKIKKLEVELSGYKEKLKRAR 53
                3444555555555555555555555555555555 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0058
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT CS
  PF01920.15  12 qqlqklaqqikqletqlkeielvleelellded 44 
                 ++ ++++qq++ql  q  +ie+++ ++++++++
  MMETSP0890-20130614|1303_1  69 KRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDT 101
                 577889999999999999999999999998887 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0096
                 T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT- CS
  PF01920.15   3 linkfqqlqqqlqklaqqikqletqlkeielvleelelldedt 45 
                 +i k  +lq++l ++++++++++  l ++ +v e ++++d d+
  MMETSP0890-20130614|1303_1 123 NIDKIDDLQDDLADMMEDMNEVQDVLGRSYDVGEDIDEADLDA 165
                 5778899999999999999999999999999999999988776 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.023        16      14      36 ..      22      44 ..      18      54 .. 0.79
   2 !   14.9   3.0   3.1e-05     0.021      11      66 ..      96     149 ..      92     163 .. 0.91
   3 ?   -1.8   0.0       4.8   3.3e+03      34      51 ..     158     174 ..     149     179 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.023
   PF05531.7 14 kavddkVdalqqqvddvqenlpd 36
                ++vd++V al++++++++ +l  
  MMETSP0890-20130614|1303_1 22 AKVDSRVAALDEKIKKLEVELSG 44
                57999999999999999887765 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.1e-05
   PF05531.7  11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                 + +k++ + Vda++++ + +++++++v+   +k+d++++ La++ + ++++qd+L 
  MMETSP0890-20130614|1303_1  96 DSVKDTITTVDAMKAASKTLKTEFKKVN--IDKIDDLQDDLADMMEDMNEVQDVLG 149
                 568999999*****************98..8************************8 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 4.8
   PF05531.7  34 lpdvtelnekLdaqsaqL 51 
                 + +  +l ++L+a+ + L
  MMETSP0890-20130614|1303_1 158 IDE-ADLDAELEALGDDL 174
                 444.34566666666555 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   3.7   6.4e-07   0.00044     163     280 ..      31     146 ..      21     149 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6.4e-07
   PF05701.6 163 nekkveeLtkeiiamkesleqlkaahaeaeeekikialekeqdreayekelkeaekelerlkedldpekdle.kLaeasaelesLqkeleeakeselesvasvtkELeeakanlekaae 280
                   +k+++L  e++  ke l++++  +++  ++++  +l++++  e+++++l   + ++e+ +  +d+ kd    ++ + a  + L++e+   k+ ++++++ ++++L ++ ++++++ +
  MMETSP0890-20130614|1303_1  31 LDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTItTVDAMKAASKTLKTEF---KKVNIDKIDDLQDDLADMMEDMNEVQD 146
                 579*****************************************************************77777**************99...677788899999******999999765 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.9   3.6e-06    0.0025      73     205 ..       3     128 ..       1     168 [. 0.69

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.6e-06
   PF13166.1  73 enlneegeikgvftLgeenkeiekeieelkkelkkleekleelekelekkekekekakaklkekawkklakkkeselkealkglkkkknykekllkelkseeikkssllsdeelkakikalkes.ekpeiallt 205
                 + + +++++++  tLg++ ++   +++ l +++kkle +l+  +++l++++     a+++lk++a   l  k+++  +++ ++l++++ + e++  ++ s    k+++ + +++ka+ k+lk++ +k +i+++ 
  MMETSP0890-20130614|1303_1   3 RIFGQKKDVAPPPTLGDAGAKVDSRVAALDEKIKKLEVELSGYKEKLKRARGP---AQKTLKQRAMGVL--KRKKMYEQQRDQLAGQAFNIEQTNFTIDSV---KDTITTVDAMKAASKTLKTEfKKVNIDKID 128
                 56777899******************************999999999998776...5666666665544..344555555566666776666666677764...456666666666666665441334455555 PP

>> PF09015.5  NgoMIV restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.2e-06    0.0035      32     133 ..      61     158 ..      43     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.2e-06
   PF09015.5  32 keiakgvakrlearetvaeklagqtsGsdfekivkkfvkktfkklkhlrpgeWevkqvgsadrleiaefeqyshlaelerlakenkelaaalGsdyvikPdi 133
                 k+ a+gv+kr +  e+  ++lagq    +  + + + vk+t++ ++ ++ ++ ++k++   ++++i ++++ +   +l+ + ++ +e++ +lG +y +  di
  MMETSP0890-20130614|1303_1  61 KQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTE--FKKVNIDKIDDLQ--DDLADMMEDMNEVQDVLGRSYDVGEDI 158
                 56688888888887777777788887777777888889***************99994..5789999999876..59********************99998 PP

>> PF08202.6  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.1   1.5e-05      0.01     163     272 ..      25     136 ..      20     152 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.5e-05
   PF08202.6 163 eenlailkekikalknEikeWaklladskdpdkeiqkekklvdse.akidsdtqepdta......qrilsdnanveskletkvDeLqdsvhkLdsaskalnelstqklqklsrllak 272
                 +  +a l ekik+l+ E +  ++ l++++ p+ +  k+  +   +  k+ ++  ++ +a      ++++  + +v++++ t vD+++ ++++L+     ++++  +k++ l+  la+
  MMETSP0890-20130614|1303_1  25 DSRVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKrKKMYEQQRDQ-LAgqafniEQTNFTIDSVKDTI-TTVDAMKAASKTLKT---EFKKVNIDKIDDLQDDLAD 136
                 56799*************************99888777765534433333333333.3334444444444444444443.445666666666665...4444444444444444433 PP

>> PF06120.6  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.19   1.3e+02      90     112 ..      28      50 ..      19      60 .. 0.82
   2 ?   11.3   1.5   0.00021      0.14      65     147 ..      63     145 ..      55     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.19
   PF06120.6  90 iedqktkvaelkdalsgyqakla 112
                 +   ++k+++l+ +lsgy++kl 
  MMETSP0890-20130614|1303_1  28 VAALDEKIKKLEVELSGYKEKLK 50 
                 556678*************9996 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00021
   PF06120.6  65 kemslteisdneskarealdeqnrliedqktkvaelkdalsgyqaklaansvsintylvnhltsmdeavekladsadelavee 147
                 + m   +  +   + r  l  q   ie+ +  + ++kd+++  +a+ aa+ + +  +   ++  +d+  ++lad+ +++   +
  MMETSP0890-20130614|1303_1  63 RAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTEFKKVNIDKIDDLQDDLADMMEDMNEVQ 145
                 66666666777789999*******************************9999888887666*************998876555 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00055      0.38      31      72 ..      22      63 ..      16      80 .. 0.65
   2 ?    3.0   2.2      0.11        73      44     101 ..      88     146 ..      67     166 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00055
   PF12718.2 31 ekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkk 72
                +k +  +++L +K+++lE e+  ++e+lk a+  ++++ k++
  MMETSP0890-20130614|1303_1 22 AKVDSRVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQR 63
                455666777777777777777777777777777666665554 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.11
   PF12718.2  44 nqqlEeevekleeqlkeakekleekekkkteaealt.rriqlLEeeleesekrLkette 101
                 ++q++  ++ ++++++++ + + ++++ kte ++++  +i  L+++l +  ++++e  +
  MMETSP0890-20130614|1303_1  88 IEQTNFTIDSVKDTITTVDAMKAASKTLKTEFKKVNiDKIDDLQDDLADMMEDMNEVQD 146
                 45555678888888888888888888888888866645888888888877777766554 PP

>> PF10018.4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8    0.0018       1.2      33      78 ..      23      78 ..      17     146 .. 0.83
   2 ?    0.1   0.1       0.6   4.1e+02       4      27 ..     124     147 ..     120     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0018
   PF10018.4 33 eLraeaeslDeqikdilkeLkearkeLkslp..dqekskl..........ssikkkqk 78
                +++ ++++lDe+ik++  eL+ ++  Lk++      ++ l          +++ ++q+
  MMETSP0890-20130614|1303_1 23 KVDSRVAALDEKIKKLEVELSGYKEKLKRARgpA--QKTLkqramgvlkrKKMYEQQR 78
                567889**********************997432..2222335666666655555555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.6
   PF10018.4   4 aedLlaaddeLksalkeleehqen 27 
                 ++++ +++d+L + ++ ++e q++
  MMETSP0890-20130614|1303_1 124 IDKIDDLQDDLADMMEDMNEVQDV 147
                 567888999999999999999875 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.1   7.4e+02      90     115 ..      27      52 ..      19      66 .. 0.62
   2 ?   11.4   2.1   0.00029       0.2      50     113 ..      85     149 ..      69     170 .. 0.78
   3 ?   -1.0   0.0       1.9   1.3e+03      94     113 ..     163     182 ..     152     201 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.1
   PF05852.6  90 rleaLtdrveelkeelefelerleae 115
                 r+ aL +++++l+ el+   e+l+++
  MMETSP0890-20130614|1303_1  27 RVAALDEKIKKLEVELSGYKEKLKRA 52 
                 45566666666666666665555554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00029
   PF05852.6  50 leklkkekelkekvssleteieekkkelelLkk.fdrkklerleaLtdrveelkeelefelerle 113
                 + ++++++    +v+++ t++ + k   ++Lk+ f + +++++++L+d ++++ e++++  + l 
  MMETSP0890-20130614|1303_1  85 AFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTeFKKVNIDKIDDLQDDLADMMEDMNEVQDVLG 149
                 45677777788899999999999********999*********************9987655554 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.9
   PF05852.6  94 Ltdrveelkeelefelerle 113
                 L  ++e l ++l++ele  +
  MMETSP0890-20130614|1303_1 163 LDAELEALGDDLDAELELDD 182
                 44455566666666666544 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015        10      30      56 ..      13      39 ..       1      40 [. 0.78
   2 ?   -2.4   0.1       8.5   5.8e+03      39      47 ..      72      80 ..      47      84 .. 0.56
   3 ?    3.7   0.0       0.1        71      14      63 ..      92     142 ..      89     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.015
                CC-BHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6 30 parpcadvrallaeklaeleeqiaeLq 56
                p ++  d+ a ++ ++a+l+e+i++L+
  MMETSP0890-20130614|1303_1 13 PPPTLGDAGAKVDSRVAALDEKIKKLE 39
                56777888899*************996 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 8.5
                HHHHHHHHH CS
   PF09278.6 39 allaeklae 47
                ++ ++++++
  MMETSP0890-20130614|1303_1 72 KMYEQQRDQ 80
                233333333 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.1
                 ---CCCHHHHHHHHHS.CC-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  14 GFsLdEIrelLalydd.parpcadvrallaeklaeleeqiaeLqalraeLe 63 
                  F++d +++ ++  d  +a+++ ++ +  +  +++++  +++L+ + ++++
  MMETSP0890-20130614|1303_1  92 NFTIDSVKDTITTVDAmKAASKTLKTEFKKVNIDKIDDLQDDLADMMEDMN 142
                 5888999999977777688888888899999999**********9998876 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.4    0.0042       2.9      95     187 ..      26     144 ..      20     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0042
   PF04156.9  95 eeleqleerlaeleseledleedlellq....eelksleerlesleesikelakeirelr..........eeisdlkeevqelrselerl............qedlqrlqeklaelqrl 187
                 + + +l+e++++le el+  +e l+ ++    + lk+ +  +++ ++ +++ +++++ +           ++++d   +v+ ++ + + l            ++++++l+ ++++ +++
  MMETSP0890-20130614|1303_1  26 SRVAALDEKIKKLEVELSGYKEKLKRARgpaqKTLKQRAMGVLKRKKMYEQQRDQLAGQAfnieqtnftiDSVKDTITTVDAMKAASKTLktefkkvnidkiDDLQDDLADMMEDMNEV 144
                 56678899999999999999999999999866556666666666666666666666666688889999997777777777777777777755555556666666666666666666655 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.7    0.0057       3.9      59     121 ..      33      92 ..      21      95 .. 0.72
   2 ?    6.6   0.4    0.0078       5.3       6      45 ..     106     146 ..      98     174 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0057
   PF07926.7  59 qeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkieelneqN 121
                 ++++kl+ el+ +++   +l+  +  a+++l++      ++k+m+e++ ++l  +  ++++ N
  MMETSP0890-20130614|1303_1  33 EKIKKLEVELSGYKE---KLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTN 92 
                 444444444444444...4455555678899999999************99998888777766 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0078
   PF07926.7   6 sslkeelkrlesqiaaiee.qiqklkdDlenqaeiareaqd 45 
                 + +k+  k l+++ +++++ +i  l+dDl ++ e ++e qd
  MMETSP0890-20130614|1303_1 106 DAMKAASKTLKTEFKKVNIdKIDDLQDDLADMMEDMNEVQD 146
                 56677777777777777766899999999999999999987 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.6    0.0033       2.3     181     272 ..      23     114 ..      16     119 .. 0.86
   2 ?    6.1   0.5     0.005       3.4     148     190 ..     117     159 ..     112     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0033
   PF08317.6 181 klrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrg 272
                 k+ ++ +al e++++L+   +  +e  +     +++ L+++   + +++k+ e+ +++l   + +ie+++  +  +++ i+  + +++ +++
  MMETSP0890-20130614|1303_1  23 KVDSRVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKT 114
                 677788888888888887777777777777888999*********************************************99999988876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.005
   PF08317.6 148 eglkeeLeenleelkedeellnkklelinsilpklrekkealk 190
                 +  k++  +++++l++d + +++++++++++l ++ +  e + 
  MMETSP0890-20130614|1303_1 117 TEFKKVNIDKIDDLQDDLADMMEDMNEVQDVLGRSYDVGEDID 159
                 4567777789999999999999999999999998877666655 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.4   0.00096      0.65      35     155 ..      20     152 ..      16     162 .. 0.80
   2 ?    3.9   0.2     0.066        45      66     135 ..     107     179 ..      99     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00096
   PF13094.1  35 qlaaelksielLqeeirreeaelekdeekleeLeknakalererkeesknlhpvlqelesevleenalaekedlklseknleptldeellellkqln........khleslqgnlaq....leglkealerak 155
                   a++ + +++L e i++ e el   +ekl++ +  a++  ++r+    + +++  ++++  + ++ + e+++++  + +++ t+ + +++  k l+        ++++ lq+ la     + ++++ l r++
  MMETSP0890-20130614|1303_1  20 AGAKVDSRVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKtefkkvniDKIDDLQDDLADmmedMNEVQDVLGRSY 152
                 568888999*************************99999999999887777999999999999999*******765555555444337777777777777777788888888888877666666666666665 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.066
   PF13094.1  66 eLeknakalererkeesknlhpvlqelesevleenalaeked...lklseknleptldeellellkqlnkhle 135
                  +++ +k l++e k+ + ++   lq +  +++e+++++++ +     + e+ +e +ld el++l + l+  le
  MMETSP0890-20130614|1303_1 107 AMKAASKTLKTEFKKVNIDKIDDLQDDLADMMEDMNEVQDVLgrsYDVGEDIDEADLDAELEALGDDLDAELE 179
                 5777788888888888888877778888888888888887777776667777888889999999999887665 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.7    0.0021       1.5      19      43 ..      28      52 ..      18      95 .. 0.77
   2 ?    4.7   1.4     0.031        21      34      94 ..     113     172 ..      90     184 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0021
   PF12325.3 19 veklsstirrlEgElaslkeelarL 43
                v +l ++i++lE+El+ +ke+l+r 
  MMETSP0890-20130614|1303_1 28 VAALDEKIKKLEVELSGYKEKLKRA 52
                77899***************98874 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.031
   PF12325.3  34 aslkeelarLeker.deareEivklteeneelkekkkeleelekeleeleqryettLellGE 94 
                  +lk+e ++++  + d +++++ +++e+++e+++   +  ++ + ++e +  +++ Le lG+
  MMETSP0890-20130614|1303_1 113 KTLKTEFKKVNIDKiDDLQDDLADMMEDMNEVQDVLGRSYDVGEDIDEAD--LDAELEALGD 172
                 56777777877776578999999999999999888877777777777654..5566666665 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0023       1.6      46      73 ..      25      52 ..      19      53 .. 0.76
   2 ?    4.0   0.1     0.055        38      34      71 ..     104     142 ..      96     151 .. 0.57
   3 ?   -2.0   0.1       4.1   2.8e+03      59      70 ..     163     174 ..     159     179 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
   PF12329.3 46 ekeieelkkkleklekeleeleerlkra 73
                ++ ++ l++k++kle el+  +e+lkra
  MMETSP0890-20130614|1303_1 25 DSRVAALDEKIKKLEVELSGYKEKLKRA 52
                5667788888888888888888888876 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.055
   PF12329.3  34 tikkLrkknkelekeieelk.kkleklekeleeleerlk 71 
                 t++ +++  k l +e ++ + +k+++l+ +l+++ e + 
  MMETSP0890-20130614|1303_1 104 TVDAMKAASKTLKTEFKKVNiDKIDDLQDDLADMMEDMN 142
                 555566666666666666555666666666555544443 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 4.1
   PF12329.3  59 lekeleeleerl 70 
                 l++ele l + l
  MMETSP0890-20130614|1303_1 163 LDAELEALGDDL 174
                 334444433333 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.4    0.0053       3.6      36     109 ..      19      92 ..      14     105 .. 0.66
   2 ?    6.3   0.5     0.011       7.3      26      71 ..     100     146 ..      87     186 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0053
   PF03938.9  36 elqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlq.aelqaeqqe 109
                 ++ ak++ + +++++++++ + el   +++l++ r   +++  k++++ + ++++ ++++++ql  ++++ eq +
  MMETSP0890-20130614|1303_1  19 DAGAKVDSRVAALDEKIKKLEVELSGYKEKLKRAR-GPAQKTLKQRAMGVLKRKKMYEQQRDQLAgQAFNIEQTN 92 
                 56778888888888888888888888888888876.666666666666666777777777777773555555444 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.011
   PF03938.9  26 kvlkaspkykelqaklqeeak.ekqqelqakkkelqkeqknlqsera 71 
                   ++  +++k++++ l++e+k    +++++ +++l  + +++++ ++
  MMETSP0890-20130614|1303_1 100 DTITTVDAMKAASKTLKTEFKkVNIDKIDDLQDDLADMMEDMNEVQD 146
                 55677788888888888886643445555555555444444444333 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.6    0.0031       2.1     133     243 ..      24     135 ..      15     151 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0031
   PF14362.1 133 lsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaaleeeraakvaeeqaan.....sandGll 243
                  +++ aal+++i++l+ el+  ++++++a+  +q+ l+ ++  gv  + + y++++++l+ +  ++e+++ ++d+ +++++     +a++++ ++  +e+++ n     + +d+l+
  MMETSP0890-20130614|1303_1  24 VDSRVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLK-QRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTIT---TVDAMKAASKTLKTEFKKVNidkidDLQDDLA 135
                 467889999999********999999999999999999.568888888888888888888888777777777777777777...33333333333333333333311224444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1101  (0.0805295); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.77
# Mc/sec: 697.12
//
Query:       MMETSP0890-20130614|1305_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 1025.94
//
Query:       MMETSP0890-20130614|1311_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-26   92.0   0.8    3.4e-26   91.7   0.6    1.0  1  PF07258.9 HCaRG protein


Domain annotation for each model (and alignments):
>> PF07258.9  HCaRG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.6   2.5e-30   3.4e-26       3     176 ..      21     189 ..      19     190 .. 0.90

  Alignments for each domain:
  == domain 1    score: 91.7 bits;  conditional E-value: 2.5e-30
   PF07258.9   3 llnklssskfkellrqvlesllgkenie.kveklaadak...ieeeelkalvaalstllksaakhdvdeeqlsaeLeqlklpkehaealskvykenkkklreslaktslrlphLedlsWRvdvklssselqevnsPvilleLklqngggssetvtfelseeklqellkelkeaqkele 176
                 +l+++ss+++k+l++qv++++l ++ +  kv k++ +++   i+    k ++aa++++l saak+dvdee+l +e+eql+lpke a a+++ y enk++lr ++++ ++ +++ +++ W     ++ ++++   + ++ l+L+l+ng    +++ + +s++k+  l++el ++q+ ++
  MMETSP0890-20130614|1311_1  21 TLSEISSVRLKLLVKQVISEILVGKLDWeKVVKFTTQKEkseIDISATKGILAAIHFILASAAKYDVDEESLTKEIEQLGLPKENAVAIVRPYRENKSALRTKFSNDTFAINRPTSFIW-----SKDNSSSAEDNGTYRLKLHLENG----TFHEICVSANKFAALRHELIQVQALMD 189
                 799*****************9977666577777777777222555555669********************************************************************.....777888888899***********....************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.88
# Mc/sec: 544.63
//
Query:       MMETSP0890-20130614|1315_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 990.93
//
Query:       MMETSP0890-20130614|1314_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.0   0.8    0.00049   19.6   0.6    1.8  1  PF01641.13 SelR domain
  ------ inclusion threshold ------
      0.081   12.1   0.0      0.087   12.0   0.0    1.1  1  PF09309.5  FCP1, C-terminal


Domain annotation for each model (and alignments):
>> PF01641.13  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.6   7.2e-08   0.00049      57     120 ..      88     140 ..      46     144 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 7.2e-08
                 -----EES--STT.TSEEEEEEE----EEEEEEETTC-TT---EE-------.--EEE--TTTEE CS
  PF01641.13  57 gcGWPsFsepise.eaikekedeslgmkRvevrcakcdahLGhvfkdGpkektgeRyCinsaslk 120
                   GWPsF ++ ++ ++++  +d +             ++hLGh + dG     g+RyCin +s+ 
  MMETSP0890-20130614|1314_1  88 SHGWPSFRDQETNwDYVRVLADGE-------CV-SVDGTHLGHNLPDGR----GNRYCINLVSVA 140
                 359999987654415555555554.......22.33457*********7....99*****99975 PP

>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.3e-05     0.087      51      84 ..      54      87 ..      15     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.3e-05
                XXXXXXXXXXXXXXXXXXXXXXXX.XXX.....X CS
   PF09309.5 51 qPgPevriydsvtGklirkgaqasapaplqapss 84
                  + e++ yds++Gkl+ +++++ +   + a s 
  MMETSP0890-20130614|1314_1 54 PQSGEINFYDSNSGKLLFTAPKGRSWEEFVAESK 87
                34679*****************988777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.54
# Mc/sec: 643.47
//
Query:       MMETSP0890-20130614|1313_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    8.5   9.5       0.29   11.1   1.5    2.6  3  PF10303.4 Protein of unknown function (DUF2408)


Domain annotation for each model (and alignments):
>> PF10303.4  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.5   2.1e-05      0.29      19     105 ..      53     152 ..      48     167 .. 0.75
   2 ?   -0.5   0.3     0.082   1.1e+03      18      45 ..     265     292 ..     250     310 .. 0.62
   3 ?    0.1   0.4     0.054   7.4e+02      95     121 ..     297     323 ..     268     326 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
   PF10303.4  19 irrsllslatsakkeksk.........eelaeelkklkeeLkeieskr.dedG........kFvssetgkvlekgqevlngllddCnnliedlseqkneelklde 105
                 i +sl + + sa+    k            +++l+  k++Lk +e++r ++          kF+sse+ +v+e+ qe+ + ll     +ie++  ++++++  ++
  MMETSP0890-20130614|1313_1  53 INQSLTNKKPSAQ----KkerasklavAAADATLNAAKMKLKVLEAERkNK-EhkvsawcqKFLSSENSTVEEAKQEISSSLLPMQDFIIENFRDSQDGTTARSR 152
                 4444444444444....3445588998889999************999433.247888999******99999999***999998888888888888776555444 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.082
   PF10303.4  18 sirrsllslatsakkekskeelaeelkk 45 
                 sirrs+ + +++++++ +++++++  ++
  MMETSP0890-20130614|1313_1 265 SIRRSTTQSLQEQQQSPEERRVQSPYQQ 292
                 6777777777777766555444443333 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.054
   PF10303.4  95 eqkneelkldeklqeiYeqLldikttL 121
                 +qk++e   ++++ e  + L+di+ +L
  MMETSP0890-20130614|1313_1 297 HQKEKESVKQRRFSESRDSLIDIRLEL 323
                 455555566678888889999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1116  (0.0816267); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.92
# Mc/sec: 916.87
//
Query:       MMETSP0890-20130614|1317_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 849.62
//
Query:       MMETSP0890-20130614|1320_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-07   29.9   0.0      4e-07   29.1   0.0    1.4  1  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.046   13.6   0.0    2.1  2  PF00789.15 UBX domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.8e-11     4e-07       4      60 ..      54     111 ..      51     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 5.8e-11
                 SSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTT.TT-TTE CS
  PF00240.18   4 sgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlsey.niqdgs 60 
                 +g++ +  ++   tv+ lK  ++e+ +ip+d qrL+++ +++ D  tls+y  i +++
  MMETSP0890-20130614|1320_1  54 DGSEGESHFKMGHTVEVLKSFVAEEFEIPMDAQRLFLDDRLMLDPLTLSDYpEISPSK 111
                 5666777888999*************************************94455555 PP

>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         1   7.2e+03      59      68 ..       8      18 ..       5      22 .. 0.67
   2 ?   13.6   0.0   6.7e-06     0.046      10      45 ..      49      84 ..      43     117 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1
                TSCC.SBCCCH CS
  PF00789.15 59 tksd.ktlsea 68
                +++d ktl+++
  MMETSP0890-20130614|1320_1  8 KEADvKTLETL 18
                56667888887 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.7e-06
                EEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCT CS
  PF00789.15 10 qiRlpDGsrlvrrFkksdtvesvyeyvdshldekee 45
                 + lpDGs  + +Fk  +tve + ++v  + +   +
  MMETSP0890-20130614|1320_1 49 IFELPDGSEGESHFKMGHTVEVLKSFVAEEFEIPMD 84
                5679***********************987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|1324_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-190  616.0   0.0    3.9e-19   67.7   0.0    7.7 12  PF13475.1  Domain of unknown function (DUF4116)
    8.1e-09   34.9   0.0        3.1    7.4   0.0    7.7  9  PF07892.6  Protein of unknown function (DUF1667)
    0.00056   19.9   5.8         75    3.5   0.0    7.9  9  PF09575.5  Small spore protein J (Spore_SspJ)
    0.00059   19.8   7.5        1.2    9.1   0.6    5.1  5  PF13778.1  Domain of unknown function (DUF4174)
    0.00063   19.3   0.0        9.4    5.7   0.0    4.0  5  PF12385.3  Papain-like cysteine protease AvrRpt2
  ------ inclusion threshold ------
       0.04   12.7   2.1         11    4.7   0.0    3.6  5  PF04381.7  Putative exonuclease, RdgC
      0.085   12.8   0.3         26    4.9   0.0    4.4  7  PF00280.13 Potato inhibitor I family
       0.44   10.9   4.5         11    6.3   0.1    3.2  3  PF00702.21 haloacid dehalogenase-like hydrolase
       0.49   10.2   3.1         78    3.2   0.0    4.5  8  PF05584.6  Sulfolobus plasmid regulatory protein
        7.9    6.1  14.6         28    4.3   0.1    4.2  4  PF04402.9  Protein of unknown function (DUF541)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.8e-18   3.8e-15       4      49 .]       1      46 [.       1      46 [. 0.97
   2 !   48.5   0.0   2.9e-16     4e-13       1      36 [.      23      58 ..      23      59 .. 0.97
   3 !   44.8   0.0   4.1e-15   5.6e-12       1      49 []      48      97 ..      48      97 .. 0.96
   4 !   45.0   0.0   3.5e-15   4.8e-12       1      49 []      74     122 ..      74     122 .. 0.98
   5 !   56.9   0.0   6.7e-19   9.2e-16       1      49 []      99     147 ..      99     147 .. 0.99
   6 !   55.7   0.0   1.6e-18   2.1e-15       1      49 []     124     172 ..     124     172 .. 0.98
   7 !   58.7   0.0   1.8e-19   2.5e-16       1      49 []     149     197 ..     149     197 .. 0.97
   8 !   67.1   0.0   4.3e-22   5.8e-19       1      49 []     174     222 ..     174     222 .. 0.99
   9 !   67.7   0.0   2.9e-22   3.9e-19       1      49 []     199     247 ..     199     247 .. 0.99
  10 !   65.7   0.0   1.2e-21   1.6e-18       1      49 []     224     272 ..     224     272 .. 0.98
  11 !   67.1   0.0   4.3e-22   5.8e-19       1      49 []     249     297 ..     249     297 .. 0.99
  12 !   43.7   0.0   8.8e-15   1.2e-11       1      43 [.     274     316 ..     274     316 .. 0.99

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 2.8e-18
   PF13475.1  4 ivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                ivl+av++ng+al+++s  LknD+eivl+Av q+g+al+yas  L+
  MMETSP0890-20130614|1324_1  1 IVLAAVTQNGCALRNASQQLKNDREIVLAAVTQDGEALRYASQQLK 46
                8*****************************************9886 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 2.9e-16
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkq 36
                DrEivl+av+++g+al+y+s  LknD+eivl+Av q
  MMETSP0890-20130614|1324_1 23 DREIVLAAVTQDGEALRYASQQLKNDREIVLAAVTQ 58
                9*********************************87 PP

  == domain 3    score: 44.8 bits;  conditional E-value: 4.1e-15
   PF13475.1  1 DrEivleavkkn.gsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrEivl+av++  g+al+y+s  LknD+ ivl+Av  ng+al yas  L+
  MMETSP0890-20130614|1324_1 48 DREIVLAAVTQSfGWALEYASQQLKNDRGIVLAAVTPNGYALQYASQQLQ 97
                9*********877*********************************8875 PP

  == domain 4    score: 45.0 bits;  conditional E-value: 3.5e-15
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 Dr ivl+av+ ng+al+y+s  L+nD+eivl  v ++g al++as eL+
  MMETSP0890-20130614|1324_1  74 DRGIVLAAVTPNGYALQYASQQLQNDREIVLTTVTKHGLALEFASAELK 122
                 899******************************************9997 PP

  == domain 5    score: 56.9 bits;  conditional E-value: 6.7e-19
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrEivl  v+k+g al+++s eLknD+eivl+A+   g+al yaseeL+
  MMETSP0890-20130614|1324_1  99 DREIVLTTVTKHGLALEFASAELKNDREIVLAALTHKGTALLYASEELK 147
                 9***********************************************8 PP

  == domain 6    score: 55.7 bits;  conditional E-value: 1.6e-18
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrEivl+a+++ g al y+seeLknD eivl+Av qng+al +a + L+
  MMETSP0890-20130614|1324_1 124 DREIVLAALTHKGTALLYASEELKNDHEIVLAAVSQNGCALQFAIDQLK 172
                 9*******************************************99886 PP

  == domain 7    score: 58.7 bits;  conditional E-value: 1.8e-19
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 D Eivl+av++ng+al+++ + Lk D++++l+Av qng al +as+ L+
  MMETSP0890-20130614|1324_1 149 DHEIVLAAVSQNGCALQFAIDQLKDDRDFILAAVTQNGFALQFASDQLK 197
                 67********************************************997 PP

  == domain 8    score: 67.1 bits;  conditional E-value: 4.3e-22
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 Dr+++l+av++ng+al+++s+ Lk+D+eivl Avkqn  al+yas eL+
  MMETSP0890-20130614|1324_1 174 DRDFILAAVTQNGFALQFASDQLKKDREIVLIAVKQNDRALKYASQELQ 222
                 9**********************************************96 PP

  == domain 9    score: 67.7 bits;  conditional E-value: 2.9e-22
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrEivl avk+n  alky+s eL+nD+eivl+Av +ng+al++as eL+
  MMETSP0890-20130614|1324_1 199 DREIVLIAVKQNDRALKYASQELQNDREIVLAAVTRNGYALKFASQELK 247
                 9**********************************************97 PP

  == domain 10    score: 65.7 bits;  conditional E-value: 1.2e-21
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrEivl+av++ng+alk++s eLk+D+eivl+Av qng+al y s e++
  MMETSP0890-20130614|1324_1 224 DREIVLAAVTRNGYALKFASQELKHDREIVLAAVTQNGYALQYTSQEFK 272
                 9********************************************9986 PP

  == domain 11    score: 67.1 bits;  conditional E-value: 4.3e-22
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrEivl+av++ng+al+y s e+knD+eivl+A+ +ngsal++as eL+
  MMETSP0890-20130614|1324_1 249 DREIVLAAVTQNGYALQYTSQEFKNDREIVLAALTKNGSALRFASQELK 297
                 9**********************************************97 PP

  == domain 12    score: 43.7 bits;  conditional E-value: 8.8e-15
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsy 43 
                 DrEivl+a++kngsal+++s eLknD  ivl A+ q+g al+y
  MMETSP0890-20130614|1324_1 274 DREIVLAALTKNGSALRFASQELKNDHVIVLTAITQDGRALEY 316
                 9****************************************98 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.24   3.2e+02       4      23 ..      38      57 ..      33      63 .. 0.87
   2 ?    0.8   0.0      0.26   3.5e+02       4      24 ..      64      84 ..      61      90 .. 0.85
   3 !    6.9   0.0    0.0032       4.3       4      33 ..      89     118 ..      86     135 .. 0.83
   4 ?    3.6   0.0     0.034        46       5      29 ..     140     164 ..     134     168 .. 0.86
   5 ?   -2.0   0.0       1.9   2.6e+03       5      25 ..     190     210 ..     185     213 .. 0.83
   6 !    7.4   0.0    0.0023       3.1       2      33 ..     212     243 ..     211     259 .. 0.85
   7 ?    2.9   0.0     0.058        79       5      30 ..     240     265 ..     237     283 .. 0.81
   8 ?    0.8   0.0      0.26   3.6e+02       4      30 ..     264     290 ..     259     302 .. 0.82
   9 ?    1.2   0.0      0.19   2.6e+02       5      27 ..     290     312 ..     286     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.24
   PF07892.6  4 eeYakkeltnpkriltstVk 23
                  Ya ++l+n + i+ + V 
  MMETSP0890-20130614|1324_1 38 LRYASQQLKNDREIVLAAVT 57
                57*************99986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.26
   PF07892.6  4 eeYakkeltnpkriltstVkv 24
                 eYa ++l+n + i+ + V  
  MMETSP0890-20130614|1324_1 64 LEYASQQLKNDRGIVLAAVTP 84
                69*************999875 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0032
   PF07892.6   4 eeYakkeltnpkriltstVkveggelplvp 33 
                  +Ya ++l+n + i+ +tV  +g  l++ +
  MMETSP0890-20130614|1324_1  89 LQYASQQLQNDREIVLTTVTKHGLALEFAS 118
                 68*****************98887777665 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.034
   PF07892.6   5 eYakkeltnpkriltstVkveggel 29 
                  Ya +el+n   i+ + V+ +g+ l
  MMETSP0890-20130614|1324_1 140 LYASEELKNDHEIVLAAVSQNGCAL 164
                 5*****************9888766 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 1.9
   PF07892.6   5 eYakkeltnpkriltstVkve 25 
                 ++a ++l++ + i+   Vk +
  MMETSP0890-20130614|1324_1 190 QFASDQLKKDREIVLIAVKQN 210
                 799999999999999988865 PP

  == domain 6    score: 7.4 bits;  conditional E-value: 0.0023
   PF07892.6   2 rGeeYakkeltnpkriltstVkveggelplvp 33 
                 r  +Ya +el+n + i+ + V  +g  l++ +
  MMETSP0890-20130614|1324_1 212 RALKYASQELQNDREIVLAAVTRNGYALKFAS 243
                 7899*****************99888777665 PP

  == domain 7    score: 2.9 bits;  conditional E-value: 0.058
   PF07892.6   5 eYakkeltnpkriltstVkveggelp 30 
                 ++a +el++ + i+ + V  +g  l+
  MMETSP0890-20130614|1324_1 240 KFASQELKHDREIVLAAVTQNGYALQ 265
                 79999999999999999988776655 PP

  == domain 8    score: 0.8 bits;  conditional E-value: 0.26
   PF07892.6   4 eeYakkeltnpkriltstVkveggelp 30 
                  +Y  +e++n + i+ +    +g+ l 
  MMETSP0890-20130614|1324_1 264 LQYTSQEFKNDREIVLAALTKNGSALR 290
                 5899********999988777766655 PP

  == domain 9    score: 1.2 bits;  conditional E-value: 0.19
   PF07892.6   5 eYakkeltnpkriltstVkvegg 27 
                  +a +el+n   i+ + +  +g 
  MMETSP0890-20130614|1324_1 290 RFASQELKNDHVIVLTAITQDGR 312
                 79*************99987665 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17   2.4e+02      22      33 ..      12      23 ..       6      25 .. 0.89
   2 ?    0.0   0.0      0.66   9.1e+02      22      33 ..      37      48 ..      32      49 .. 0.85
   3 ?    3.5   0.0     0.055        75      22      33 ..      63      74 ..      57      75 .. 0.92
   4 ?   -2.1   0.0         3     4e+03      22      33 ..      88      99 ..      87     100 .. 0.81
   5 ?    2.8   0.0      0.09   1.2e+02      22      33 ..     113     124 ..     110     125 .. 0.93
   6 ?   -1.7   0.0       2.2     3e+03      23      33 ..     139     149 ..     137     150 .. 0.81
   7 ?    1.8   0.1      0.19   2.5e+02      17      33 ..     208     224 ..     191     225 .. 0.85
   8 ?   -0.3   0.0      0.83   1.1e+03      22      33 ..     238     249 ..     236     250 .. 0.86
   9 ?    0.7   0.0      0.41   5.6e+02      22      33 ..     288     299 ..     283     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.17
   PF09575.5 22 aLEdAgkaLkgD 33
                aL +A+++Lk+D
  MMETSP0890-20130614|1324_1 12 ALRNASQQLKND 23
                8999******99 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.66
   PF09575.5 22 aLEdAgkaLkgD 33
                aL  A+++Lk+D
  MMETSP0890-20130614|1324_1 37 ALRYASQQLKND 48
                788899**9998 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.055
   PF09575.5 22 aLEdAgkaLkgD 33
                aLE A+++Lk+D
  MMETSP0890-20130614|1324_1 63 ALEYASQQLKND 74
                8*********99 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 3
   PF09575.5 22 aLEdAgkaLkgD 33
                aL  A+++L++D
  MMETSP0890-20130614|1324_1 88 ALQYASQQLQND 99
                677899999887 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.09
   PF09575.5  22 aLEdAgkaLkgD 33 
                 aLE A+++Lk+D
  MMETSP0890-20130614|1324_1 113 ALEFASAELKND 124
                 89********99 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 2.2
   PF09575.5  23 LEdAgkaLkgD 33 
                 L  A+++Lk+D
  MMETSP0890-20130614|1324_1 139 LLYASEELKND 149
                 5669*****99 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.19
   PF09575.5  17 navdgaLEdAgkaLkgD 33 
                 ++ d aL  A+++L++D
  MMETSP0890-20130614|1324_1 208 KQNDRALKYASQELQND 224
                 456789999*****998 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.83
   PF09575.5  22 aLEdAgkaLkgD 33 
                 aL  A+++Lk D
  MMETSP0890-20130614|1324_1 238 ALKFASQELKHD 249
                 6778******98 PP

  == domain 9    score: 0.7 bits;  conditional E-value: 0.41
   PF09575.5  22 aLEdAgkaLkgD 33 
                 aL  A+++Lk+D
  MMETSP0890-20130614|1324_1 288 ALRFASQELKND 299
                 6778******99 PP

>> PF13778.1  Domain of unknown function (DUF4174)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.091   1.2e+02       3      43 ..      16      50 ..       7      63 .. 0.64
   2 ?    5.1   0.0     0.015        20       4      56 ..      68     114 ..      65     140 .. 0.82
   3 ?   -1.7   0.0         2   2.7e+03      13      52 ..     152     185 ..     139     189 .. 0.64
   4 !    9.1   0.6   0.00087       1.2       2      58 ..     191     241 ..     190     278 .. 0.82
   5 ?    2.0   0.0      0.14   1.9e+02       9      54 ..     273     311 ..     265     318 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.091
   PF13778.1  3 lsefrwkkRllvvfapseadprlqeqlealeeakcelaeRd 43
                +s++ ++ R +v+ a +++ ++l+   ++l++      +R+
  MMETSP0890-20130614|1324_1 16 ASQQLKNDREIVLAAVTQDGEALRYASQQLKN------DRE 50
                45666666666666666666666666666666......344 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.015
   PF13778.1   4 sefrwkkRllvvfapseadprlqeqlealeeakcelaeRdvvvltltgegaes 56 
                 s++ ++ R +v+ a +++  +lq   ++l++      +R++v+ t+t+ g   
  MMETSP0890-20130614|1324_1  68 SQQLKNDRGIVLAAVTPNGYALQYASQQLQN------DREIVLTTVTKHGLAL 114
                 7888999999999999999999999999999......9999999999988765 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2
   PF13778.1  13 lvvfapseadprlqeqlealeeakcelaeRdvvvltltge 52 
                 +v+ a s++  +lq+ +++l++      +Rd ++  +t++
  MMETSP0890-20130614|1324_1 152 IVLAAVSQNGCALQFAIDQLKD------DRDFILAAVTQN 185
                 5666666666666777777766......666666666665 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.00087
   PF13778.1   2 plsefrwkkRllvvfapseadprlqeqlealeeakcelaeRdvvvltltgegaesgg 58 
                 ++s++ +k R +v++a +++d++l+   + l++      +R++v+  +t++g+    
  MMETSP0890-20130614|1324_1 191 FASDQLKKDREIVLIAVKQNDRALKYASQELQN------DREIVLAAVTRNGYALKF 241
                 5788999**************999999999999......999999999999998733 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.14
   PF13778.1   9 kkRllvvfapseadprlqeqlealeeakcelaeRdvvvltltgega 54 
                 + R +v+ a +++ ++       l+ a++el++ +v+vlt + +++
  MMETSP0890-20130614|1324_1 273 NDREIVLAALTKNGSA-------LRFASQELKNDHVIVLTAITQDG 311
                 5555555555555544.......44455556666666666665555 PP

>> PF12385.3  Papain-like cysteine protease AvrRpt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0069       9.4     126     164 ..      25      63 ..       3      66 .. 0.86
   2 ?    1.5   0.0      0.14   1.9e+02     125     158 ..     100     133 ..      72     138 .. 0.79
   3 ?    2.2   0.0     0.087   1.2e+02     128     158 ..     103     133 ..      93     192 .. 0.52
   4 ?    0.2   0.0      0.34   4.6e+02     135     135 ..     185     185 ..     135     243 .. 0.55
   5 ?    5.1   0.0     0.011        14      98     141 ..     275     316 ..     242     318 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0069
   PF12385.3 126 vivltGidketdviifhDPergPdltmsldtlnqrlawr 164
                  ivl+ + ++++++ +   +   d+++ l+ + q++ w 
  MMETSP0890-20130614|1324_1  25 EIVLAAVTQDGEALRYASQQLKNDREIVLAAVTQSFGWA 63 
                 49***********************************96 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.14
   PF12385.3 125 hvivltGidketdviifhDPergPdltmsldtln 158
                   ivlt + k++ ++ f   e   d+++ l+ l 
  MMETSP0890-20130614|1324_1 100 REIVLTTVTKHGLALEFASAELKNDREIVLAALT 133
                 359****************999999999999886 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.087
   PF12385.3 128 vltGidketdviifhDPergPdltmsldtln 158
                 vlt + k++ ++ f   e   d+++ l+ l 
  MMETSP0890-20130614|1324_1 103 VLTTVTKHGLALEFASAELKNDREIVLAALT 133
                 4444444444444444444444444444332 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.34
   PF12385.3 135 e 135
                 +
  MMETSP0890-20130614|1324_1 185 N 185
                 1 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.011
   PF12385.3  98 aeelaalLskhGP.iiaaletPndelvahvivltGidketdviif 141
                  e + a L+k G  + +a ++ ++    hvivlt i +++ ++ +
  MMETSP0890-20130614|1324_1 275 REIVLAALTKNGSaLRFASQELKN---DHVIVLTAITQDGRALEY 316
                 444556666666513444443332...489********9998877 PP

>> PF04381.7  Putative exonuclease, RdgC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011        15     184     216 ..      16      48 ..      12      71 .. 0.88
   2 ?   -0.8   0.0      0.39   5.4e+02     185     216 ..     118     149 ..      79     184 .. 0.61
   3 ?   -0.8   0.0      0.39   5.3e+02     186     216 ..     194     224 ..     188     244 .. 0.82
   4 ?   -0.6   0.0      0.33   4.6e+02     185     216 ..     218     249 ..     212     264 .. 0.85
   5 ?    4.7   0.0    0.0079        11     185     218 ..     268     301 ..     263     313 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.011
   PF04381.7 184 lpagfelgeeaeLksaeeegavvrckkqdlesd 216
                 + ++++ ++e+ L +++++g + r+ +q+l++d
  MMETSP0890-20130614|1324_1  16 ASQQLKNDREIVLAAVTQDGEALRYASQQLKND 48 
                 67889999**********************998 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.39
   PF04381.7 185 pagfelgeeaeLksaeeegavvrckkqdlesd 216
                  a+++ ++e+ L + +++g +  + +++l++d
  MMETSP0890-20130614|1324_1 118 SAELKNDREIVLAALTHKGTALLYASEELKND 149
                 34444555555555555555555555555554 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.39
   PF04381.7 186 agfelgeeaeLksaeeegavvrckkqdlesd 216
                 ++++ ++e+ L ++++++ + ++ +q+l++d
  MMETSP0890-20130614|1324_1 194 DQLKKDREIVLIAVKQNDRALKYASQELQND 224
                 5677889999999999999999999999988 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.33
   PF04381.7 185 pagfelgeeaeLksaeeegavvrckkqdlesd 216
                  ++++ ++e+ L +++ +g + ++ +q+l++d
  MMETSP0890-20130614|1324_1 218 SQELQNDREIVLAAVTRNGYALKFASQELKHD 249
                 6788999999*******************988 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0079
   PF04381.7 185 pagfelgeeaeLksaeeegavvrckkqdlesdei 218
                  ++f+ ++e+ L + +++g++ r+ +q+l++d +
  MMETSP0890-20130614|1324_1 268 SQEFKNDREIVLAALTKNGSALRFASQELKNDHV 301
                 689999*************************987 PP

>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.28   3.9e+02       9      36 ..      10      37 ..       9      52 .. 0.85
   2 ?    4.9   0.0     0.019        26       9      35 ..      61      87 ..      57     108 .. 0.90
   3 ?   -0.5   0.0       0.9   1.2e+03       9      34 ..      86     111 ..      85     129 .. 0.82
   4 ?   -1.7   0.0       2.2     3e+03      13      35 ..     190     212 ..     185     230 .. 0.74
   5 ?   -1.2   0.0       1.5     2e+03      13      35 ..     215     237 ..     212     262 .. 0.66
   6 ?   -1.0   0.0       1.3   1.8e+03      13      36 ..     240     263 ..     234     291 .. 0.62
   7 ?   -2.0   0.0       2.7   3.6e+03      15      36 ..     267     288 ..     258     306 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.28
                --BHHHHHHHHHHH-TTSEEEEEE---- CS
  PF00280.13  9 GvkgeeAkeiIekenpdvtvvvlpegsp 36
                G    +A ++ ++++  v + v ++g++
  MMETSP0890-20130614|1324_1 10 GCALRNASQQLKNDREIVLAAVTQDGEA 37
                666778999999**99999999999976 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.019
                --BHHHHHHHHHHH-TTSEEEEEE--- CS
  PF00280.13  9 GvkgeeAkeiIekenpdvtvvvlpegs 35
                G+  e+A ++ ++++  v + v p+g 
  MMETSP0890-20130614|1324_1 61 GWALEYASQQLKNDRGIVLAAVTPNGY 87
                999*********************996 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.9
                 --BHHHHHHHHHHH-TTSEEEEEE-- CS
  PF00280.13   9 GvkgeeAkeiIekenpdvtvvvlpeg 34 
                 G   ++A ++ ++++  v   v ++g
  MMETSP0890-20130614|1324_1  86 GYALQYASQQLQNDREIVLTTVTKHG 111
                 66678999999999999988887776 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 2.2
                 HHHHHHHHHH-TTSEEEEEE--- CS
  PF00280.13  13 eeAkeiIekenpdvtvvvlpegs 35 
                 + A  + +k++  v + v +++ 
  MMETSP0890-20130614|1324_1 190 QFASDQLKKDREIVLIAVKQNDR 212
                 56778888888888888777665 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 1.5
                 HHHHHHHHHH-TTSEEEEEE--- CS
  PF00280.13  13 eeAkeiIekenpdvtvvvlpegs 35 
                 ++A +  ++++  v + v ++g 
  MMETSP0890-20130614|1324_1 215 KYASQELQNDREIVLAAVTRNGY 237
                 56777777777777777776664 PP

  == domain 6    score: -1.0 bits;  conditional E-value: 1.3
                 HHHHHHHHHH-TTSEEEEEE---- CS
  PF00280.13  13 eeAkeiIekenpdvtvvvlpegsp 36 
                 + A +  ++++  v + v ++g +
  MMETSP0890-20130614|1324_1 240 KFASQELKHDREIVLAAVTQNGYA 263
                 556677777777777777777754 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 2.7
                 HHHHHHHH-TTSEEEEEE---- CS
  PF00280.13  15 AkeiIekenpdvtvvvlpegsp 36 
                   + +++++  v + + ++gs+
  MMETSP0890-20130614|1324_1 267 TSQEFKNDREIVLAALTKNGSA 288
                 5566777888888888888876 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.31   4.3e+02     145     188 ..       9      53 ..       1      59 [. 0.75
   2 ?    6.3   0.1     0.008        11     130     188 ..      43     104 ..      14     107 .. 0.77
   3 ?    3.7   0.9      0.05        68     109     187 ..     159     228 ..     108     311 .. 0.55

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.31
                 CHHHHHHHHHHTTC.SEEEEHHHTTSHHHHHHHHHHHTS-GGGEE CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21 145 npetaeaiakqagi.dslvfaevkPepklfvaaieeLqidpgeva 188
                 n ++ +++ +q++  +++v a v  +++ ++ a ++L+ d+++v+
  MMETSP0890-20130614|1324_1   9 NGCALRNASQQLKNdREIVLAAVTQDGEALRYASQQLKNDREIVL 53 
                 445555666666668889999999999999999999998888876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.008
                 HHHHHT.TC.EEEEESSCHHHHHHHHHHTTC.SEEEEHHHTTSHHHHHHHHHHHTS-GGGEE CS
                 xxxxxx.xx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21 130 asLkaa.gi.vvlltgdnpetaeaiakqagi.dslvfaevkPepklfvaaieeLqidpgeva 188
                 ++Lk    i ++ +t     + e + +q++  + +v a v P++  ++ a ++Lq d+++v+
  MMETSP0890-20130614|1324_1  43 QQLKNDrEIvLAAVTQSFGWALEYASQQLKNdRGIVLAAVTPNGYALQYASQQLQNDREIVL 104
                 4454442557777777777777777777777888999999***************8888986 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.05
                 HHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTCSEEEEHHHTTSHHHHHHHHHHHTS-GGGE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21 109 aralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagidslvfaevkPepklfvaaieeLqidpgev 187
                 +  ++++  +d++k++   ++a++ ++g  +  ++       +   k   i   v   vk ++  +  a +eLq d+++v
  MMETSP0890-20130614|1324_1 159 QNGCALQFAIDQLKDDRDFILAAVTQNGFaLQFAS-------DQLKKDREI---VLIAVKQNDRALKYASQELQNDREIV 228
                 44444445555555544444444333332222222.......111111111...22222333333333333333333322 PP

>> PF05584.6  Sulfolobus plasmid regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.9   2.6e+03      11      40 ..       3      32 ..       2      34 .. 0.80
   2 ?   -0.7   0.0      0.95   1.3e+03       8      40 ..      25      57 ..      17      61 .. 0.76
   3 ?    0.2   0.0      0.49   6.7e+02      10      41 ..      78     109 ..      68     115 .. 0.79
   4 ?    0.8   0.1      0.31   4.2e+02       7      40 ..     100     133 ..      93     137 .. 0.76
   5 ?    0.1   0.0      0.51   6.9e+02       7      37 ..     125     155 ..     118     160 .. 0.81
   6 ?   -1.2   0.0       1.3   1.8e+03       9      39 ..     177     207 ..     169     216 .. 0.83
   7 ?   -0.2   0.0      0.64   8.7e+02       8      41 ..     201     234 ..     193     236 .. 0.77
   8 ?    3.2   0.0     0.057        78       7      41 ..     250     284 ..     244     286 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.9
   PF05584.6 11 lirlsakcatLeeLeekTgaekeellVtLt 40
                l+ ++++ ++L +  ++ + ++e +l   t
  MMETSP0890-20130614|1324_1  3 LAAVTQNGCALRNASQQLKNDREIVLAAVT 32
                677888988999999999999999987655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.95
   PF05584.6  8 elilirlsakcatLeeLeekTgaekeellVtLt 40
                e +l+ +++   +L +  ++ + ++e +l   t
  MMETSP0890-20130614|1324_1 25 EIVLAAVTQDGEALRYASQQLKNDREIVLAAVT 57
                456667777799999999999999999987665 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.49
   PF05584.6  10 ilirlsakcatLeeLeekTgaekeellVtLtr 41 
                 +l+ ++ +  +L++  ++ + ++e +l t t+
  MMETSP0890-20130614|1324_1  78 VLAAVTPNGYALQYASQQLQNDREIVLTTVTK 109
                 56677778899999999999999999888765 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.31
   PF05584.6   7 telilirlsakcatLeeLeekTgaekeellVtLt 40 
                 +e +l  ++++  +Le    + + ++e +l  Lt
  MMETSP0890-20130614|1324_1 100 REIVLTTVTKHGLALEFASAELKNDREIVLAALT 133
                 3445666776799999999999999999999987 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.51
   PF05584.6   7 telilirlsakcatLeeLeekTgaekeellV 37 
                 +e +l+ l++k ++L +  e+ + ++e +l 
  MMETSP0890-20130614|1324_1 125 REIVLAALTHKGTALLYASEELKNDHEIVLA 155
                 5678999999999999999988888888876 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 1.3
   PF05584.6   9 lilirlsakcatLeeLeekTgaekeellVtL 39 
                  il+ ++++  +L+   ++ + ++e +l+  
  MMETSP0890-20130614|1324_1 177 FILAAVTQNGFALQFASDQLKKDREIVLIAV 207
                 5888889889999999999999999999865 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.64
   PF05584.6   8 elilirlsakcatLeeLeekTgaekeellVtLtr 41 
                 e +li + ++  +L +  ++ + ++e +l   tr
  MMETSP0890-20130614|1324_1 201 EIVLIAVKQNDRALKYASQELQNDREIVLAAVTR 234
                 4455666666999999999999999999988887 PP

  == domain 8    score: 3.2 bits;  conditional E-value: 0.057
   PF05584.6   7 telilirlsakcatLeeLeekTgaekeellVtLtr 41 
                 +e +l+ ++++  +L++  ++ + ++e +l  Lt+
  MMETSP0890-20130614|1324_1 250 REIVLAAVTQNGYALQYTSQEFKNDREIVLAALTK 284
                 56789999999*******************99986 PP

>> PF04402.9  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.7      0.03        41       7      48 ..      16      57 ..      14      74 .. 0.90
   2 ?    4.3   0.1     0.021        28       7      53 ..      67     113 ..      65     144 .. 0.69
   3 ?   -0.4   0.0      0.59     8e+02       7      51 ..     117     161 ..     115     185 .. 0.82
   4 ?    3.2   1.6     0.045        62      12      53 ..     197     238 ..     191     309 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.03
   PF04402.9  7 aevevkpDratlslavesegedaaeaaeelservnrvlaalk 48
                a+++ k+Dr ++  av+ +ge +  a ++l ++++ vlaa++
  MMETSP0890-20130614|1324_1 16 ASQQLKNDREIVLAAVTQDGEALRYASQQLKNDREIVLAAVT 57
                89999**********************************995 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.021
   PF04402.9   7 aevevkpDratlslavesegedaaeaaeelservnrvlaalkkagie 53 
                 a+++ k+Dr ++  av+  g  ++ a ++l+++++ vl++++k g+ 
  MMETSP0890-20130614|1324_1  67 ASQQLKNDRGIVLAAVTPNGYALQYASQQLQNDREIVLTTVTKHGLA 113
                 66777777777777777777777777777777777777777777654 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.59
   PF04402.9   7 aevevkpDratlslavesegedaaeaaeelservnrvlaalkkag 51 
                 a++e k+Dr ++  a++++g+ +  a eel ++ + vlaa++++g
  MMETSP0890-20130614|1324_1 117 ASAELKNDREIVLAALTHKGTALLYASEELKNDHEIVLAAVSQNG 161
                 678889999999999999999999999999999999999998777 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.045
   PF04402.9  12 kpDratlslavesegedaaeaaeelservnrvlaalkkagie 53 
                 k Dr ++ +av+  +  ++ a +el+++++ vlaa++++g+ 
  MMETSP0890-20130614|1324_1 197 KKDREIVLIAVKQNDRALKYASQELQNDREIVLAAVTRNGYA 238
                 566666677777777777777777777777777777666643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:01.03
# Mc/sec: 744.50
//
Query:       MMETSP0890-20130614|1323_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.94
# Mc/sec: 1124.25
//
Query:       MMETSP0890-20130614|1327_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-28   95.8   4.1    4.2e-13   48.9   1.1    2.3  2  PF00249.26 Myb-like DNA-binding domain
    4.1e-23   81.1   3.9    1.3e-16   60.3   0.4    2.5  2  PF13921.1  Myb-like DNA-binding domain
    0.00028   20.8   5.0    0.00033   20.6   0.2    2.7  2  PF13837.1  Myb/SANT-like DNA-binding domain
     0.0032   16.8   3.5        1.3    8.3   0.0    3.3  3  PF13325.1  N-terminal region of micro-spherule protein
  ------ inclusion threshold ------
      0.013   15.5   2.1        1.6    8.9   0.2    2.7  2  PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
      0.015   15.0   5.7       0.71    9.6   0.1    3.8  3  PF13873.1  Myb/SANT-like DNA-binding domain
      0.068   12.6   1.3       0.11   12.0   0.9    1.3  1  PF14253.1  Bacteriophage abortive infection AbiH


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   1.1   2.2e-16   4.2e-13       1      48 []      39      91 ..      39      91 .. 0.98
   2 !   47.2   0.0   7.4e-16   1.4e-12       1      47 [.      97     141 ..      97     142 .. 0.96

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.2e-16
                TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT.....TTS-HHHHHHHHHHHT CS
  PF00249.26  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                r++W+  Ede +v++v+++G+++W++I+++++      +R++kqc+ rw+++l
  MMETSP0890-20130614|1327_1 39 RKAWSCKEDETIVRLVEKHGTKRWALISQELNseilgVNRSGKQCRTRWLNHL 91
                789************************************************97 PP

  == domain 2    score: 47.2 bits;  conditional E-value: 7.4e-16
                 TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                 r +W+  E+ ++++a +  G++ W+ Ia++++ gRt++ +k++w++ 
  MMETSP0890-20130614|1327_1  97 REPWSDAEENIIYNAQQTIGNK-WAEIAKLLP-GRTDNAIKNHWYST 141
                 789*******************.*********.***********986 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.4   6.5e-20   1.3e-16       1      57 [.      42     105 ..      42     108 .. 0.95
   2 !   29.2   0.4   3.2e-10   6.3e-07       1      49 [.     100     148 ..     100     150 .. 0.96

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 6.5e-20
   PF13921.1   1 WtdeEdeiLlklveeygn.dWseIaeelg......rRtplacqdrwknkLrpkisrapwtkeed 57 
                 W+  Ede++ +lve++g   W++I++el+      +R+ ++c+ rw+n+L+p i+r+pw+++e+
  MMETSP0890-20130614|1327_1  42 WSCKEDETIVRLVEKHGTkRWALISQELNseilgvNRSGKQCRTRWLNHLDPTIRREPWSDAEE 105
                 ****************9637********99*******************************998 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 3.2e-10
   PF13921.1   1 WtdeEdeiLlklveeygndWseIaeel.grRtplacqdrwknkLrpkisr 49 
                 W+d+E+ i+ +  ++ gn+W+eIa+ l g Rt +a++++w+++ r +++r
  MMETSP0890-20130614|1327_1 100 WSDAEENIIYNAQQTIGNKWAEIAKLLpG-RTDNAIKNHWYSTMRRNMRR 148
                 ***************************88.************99999887 PP

>> PF13837.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   1.7e-07   0.00033      25      62 ..      51      89 ..      38      98 .. 0.77
   2 ?    1.3   0.3      0.17   3.4e+02      32      69 ..     115     148 ..      96     175 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.7e-07
                TTT..SS--HHHHHHHHHHHHH-..-----HHHHHHHHHH CS
   PF13837.1 25 fqeggkkknkelWeevaeamaer..gykrspkqCkdKwen 62
                ++   +k++++ W  ++++++++  g++rs kqC+++w n
  MMETSP0890-20130614|1327_1 51 VR-LVEKHGTKRWALISQELNSEilGVNRSGKQCRTRWLN 89
                33.356888889********98666*************65 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.17
                 --HHHHHHHHHHHHH------HHHHHHHHH.HHHHHHHH CS
   PF13837.1  32 knkelWeevaeamaergykrspkqCkdKwe.nLkkrYkk 69 
                  ++ +W e+a+ +      r++  +k+ w  ++++  ++
  MMETSP0890-20130614|1327_1 115 IGN-KWAEIAKLLP----GRTDNAIKNHWYsTMRRNMRR 148
                 333.5666666553....456666666664134444444 PP

>> PF13325.1  N-terminal region of micro-spherule protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00066       1.3      46     123 ..      13      88 ..       8      92 .. 0.73
   2 !    6.8   0.1     0.002       3.9      72     130 ..      96     146 ..      88     196 .. 0.61
   3 ?    0.6   0.0      0.15     3e+02      83     119 ..     294     331 ..     286     348 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00066
   PF13325.1  46 lydpaisriavaalrnLhpeavasvqkkalfSkeEeellakikstekpklekFqelldk.naevfyrsrtaksLqahwl 123
                 l d +i ++a +++++ + ea+ s q+ka +S +E+e + ++ +++    ++++ + ++ n+e++   r++k+ ++ wl
  MMETSP0890-20130614|1327_1  13 LLDVSIRKTASRSMNETENEAIPSSQRKA-WSCKEDETIVRLVEKHG--TKRWALISQElNSEILGVNRSGKQCRTRWL 88 
                 5577899******************9997.78888877766655543..334444433226778888888888888776 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.002
   PF13325.1  72 kkalfSkeEeellakikstekpklekFqelldknaevfyrsrtaksLqahwlllkqysl 130
                 ++ ++S++Ee+++ + ++t  +k ++ ++ll        + rt +++++hw    +  +
  MMETSP0890-20130614|1327_1  96 RREPWSDAEENIIYNAQQTIGNKWAEIAKLL--------PGRTDNAIKNHWYSTMRRNM 146
                 57799*******9999999988888887776........67888888888865333333 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.15
   PF13325.1  83 llakikstekpklekFqelldknaevfyr.srtaksLq 119
                 ll  +++++ p+ ++ q l+ k+++++ +  r ++ Lq
  MMETSP0890-20130614|1327_1 294 LLNLMTQSSLPTCDAVQALFRKQSSIITTtHRIPTRLQ 331
                 6777889999*************999865167888887 PP

>> PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0079        15      24      51 ..      57      89 ..      24      99 .. 0.81
   2 ?    8.9   0.2    0.0008       1.6      19      64 ..     109     154 ..     100     165 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0079
   PF10545.4 24 areeawaeiaeelgeklp.....eedckkkwkn 51
                + ++ wa i++el++++       ++c+++w n
  MMETSP0890-20130614|1327_1 57 HGTKRWALISQELNSEILgvnrsGKQCRTRWLN 89
                56789********86554444435779999976 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0008
   PF10545.4  19 yrnrsareeawaeiaeelgeklpeedckkkwkn.LRdqyrrelkkre 64 
                 y+ +++  ++waeia+ l+   + + +k  w + +R + rr  k+ +
  MMETSP0890-20130614|1327_1 109 YNAQQTIGNKWAEIAKLLPG-RTDNAIKNHWYStMRRNMRRMAKEGD 154
                 777788899*********84.44458999996526777777665444 PP

>> PF13873.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.056   1.1e+02       3      20 ..      40      57 ..      38      60 .. 0.91
   2 ?    9.6   0.1   0.00036      0.71      40      67 ..      61      89 ..      59      98 .. 0.87
   3 ?    2.8   0.5     0.047        91      39      74 ..     117     148 ..     103     152 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.056
   PF13873.1  3 knfteeEkevLvelvekr 20
                k ++ +E e++v+lvek+
  MMETSP0890-20130614|1327_1 40 KAWSCKEDETIVRLVEKH 57
                67999************9 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00036
   PF13873.1 40 aWeeiaeevna.lgptqRtadelkkkWed 67
                 W+ i++e+n+ + +++R+ ++++++W +
  MMETSP0890-20130614|1327_1 61 RWALISQELNSeILGVNRSGKQCRTRWLN 89
                6*********977777***********87 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.047
   PF13873.1  39 raWeeiaeevnalgptqRtadelkkkW.edlkkraKk 74 
                 ++W+eia+ +     + Rt +++k+ W +++++++++
  MMETSP0890-20130614|1327_1 117 NKWAEIAKLL-----PGRTDNAIKNHWySTMRRNMRR 148
                 5799999999.....7799999997762556665554 PP

>> PF14253.1  Bacteriophage abortive infection AbiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   5.4e-05      0.11      36     128 ..      85     193 ..      35     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.4e-05
   PF14253.1  36 nelieyleekieendelWsdfEealgkldekls..................eeekfsdeyediiddlrkeletee.esieyleidlkklfkeliksieiieekikeklkekv 128
                  +++++l+ +i    e Wsd Ee++ +  ++ +                  +++++ + +++ + ++ ke +t + +++++++ ++ ++f+eli++ +  ++++k+k+k+ +
  MMETSP0890-20130614|1327_1  85 TRWLNHLDPTIR--REPWSDAEENIIYNAQQTIgnkwaeiakllpgrtdnaIKNHWYSTMRRNMRRMAKEGDTGKgDETNEIDDHNGNVFSELIRKDQEANNIKKDKKKK-I 193
                 568888887776..599*****999998888777777777777777666555555777888888888888887755999999999999******9955555444444432.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:01.60
# Mc/sec: 530.19
//
Query:       MMETSP0890-20130614|1329_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 305.29
//
Query:       MMETSP0890-20130614|1330_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-41  138.9   0.0    9.6e-41  138.7   0.0    1.1  1  PF00071.17 Ras family
    2.7e-15   56.7   0.0    5.7e-15   55.7   0.0    1.5  2  PF08477.8  Miro-like protein
    2.2e-12   46.4   0.0    2.8e-12   46.0   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    3.3e-07   29.8   0.0    6.2e-05   22.3   0.0    2.3  1  PF00009.22 Elongation factor Tu GTP binding domain
    4.2e-05   22.6   0.0    5.3e-05   22.3   0.0    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
    0.00085   19.1   0.0     0.0013   18.6   0.0    1.3  1  PF01926.18 50S ribosome-binding GTPase
     0.0096   14.6   0.0      0.012   14.2   0.0    1.2  1  PF03308.11 ArgK protein


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   4.9e-44   9.6e-41       3     159 ..       2     159 ..       1     162 [. 0.98

  Alignments for each domain:
  == domain 1    score: 138.7 bits;  conditional E-value: 4.9e-44
                 EEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHH CS
  PF00071.17   3 vlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellre 159
                 v+vGd+  GKtsl  rf  ++ ++  ++Tig+ f++k +++  +  v l++wDTAGqe+f+s++++yyr+a+++++v+d++++++++++++w +++ ++ae +v+i++ GnKvDl+     s+e  ++ +++++++f  tSA t ++v+e+f++++r+
  MMETSP0890-20130614|1330_1   2 VVVGDTDAGKTSLSERFCYGEAPTAAHPTIGASFLQKVVNIPeSPPVVLQLWDTAGQERFRSMAPMYYRGATAAIIVFDVSKENAWNTIQTWQKDLMTYAEPGVVICVAGNKVDLDPAPSFSEEACRASCSSWDATFHLTSATTGQGVDELFTTVARR 159
                 89***************************************85678************************************************************************************************************9985 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.9e-18   5.7e-15       3     119 .]       2     115 ..       1     115 [. 0.86
   2 ?   -2.4   0.0       3.1     6e+03      33      51 ..     142     160 ..     126     178 .. 0.60

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 2.9e-18
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel.lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 vvvGd+++GK+sl ++++++e p  +   +++g+    k +++       l+lwd++g+e++ ++ ++  + a+a+++v+d+++e+  +++    +w + l  +++  +++ + gnk D
  MMETSP0890-20130614|1330_1   2 VVVGDTDAGKTSLSERFCYGEAP--TAAHPTIGASFLQKVVNIPESPPVvLQLWDTAGQERFRSMAPMYYRGATAAIIVFDVSKENAWNTI---QTWQKDLMTYAEPgVVICVAGNKVD 115
                 8**********************..8888888888886655555555448**************99999*********************7...45666666666666*********98 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.1
   PF08477.8  33 ikgdtlavktlevdvdtel 51 
                 + +++++v++l++ v+++ 
  MMETSP0890-20130614|1330_1 142 SATTGQGVDELFTTVARRG 160
                 4455555666666665554 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.5e-15   2.8e-12      18     171 ..       2     156 ..       1     159 [. 0.86

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.5e-15
                 EEE--TT---HHHHHHHHHS-EEE.E-S--S-E..EEEEEE...TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHH CS
  PF00025.16  18 lllGLDnaGKtTilkklkleelvt.tvPTigfn..veelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewl 171
                 +++G   aGKt + +++  +e  t   PTig     + ++i     + +++wD  Gqe+ R++   Y++  +a i v D+++++  ++ ++  k l++  e   v++ v +NK Dl  a s +e ++  + ++       +   +sa++g+g++e ++ +
  MMETSP0890-20130614|1330_1   2 VVVGDTDAGKTSLSERFCYGEAPTaAHPTIGASflQKVVNIpesPPVVLQLWDTAGQERFRSMAPMYYRGATAAIIVFDVSKENAWNTIQTWQKDLMTYAE-PGVVICVAGNKVDLDPAPSFSEEACRASCSSWD----ATFHLTSATTGQGVDELFTTV 156
                 6788889***********999987589***976214556664446799*****************************************999999999887.589999*************99999988887766....6677799********998876 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.2e-08   6.2e-05       7     183 ..       2     157 ..       1     161 [. 0.77

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.2e-08
                 EEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHH....HHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHH CS
  PF00009.22   7 giighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrl....akklgvkiivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaiv 183
                 +++g++D+GKt+l ++  y  +                 +++    g +   +++++  e+    ++l Dt G + F ++     r + +a++v+d+++    +T + ++       + gv i+v+ NK+D+    ++ e    ++        ++    +++  +Sa +g+g+d+L+ ++ 
  MMETSP0890-20130614|1330_1   2 VVVGDTDAGKTSLSERFCYGEAP----------------TAAHPTIGASFLQKVVNIP-ESPPVVLQLWDTAGQERFRSMAPMYYRGATAAIIVFDVSKENAWNTIQTWQKdlmtYAEPGVVICVAGNKVDLDpAPSFSEEACRAS-----CSSWD----ATFHLTSATTGQGVDELFTTVA 157
                 68999999999999999987744................3445667899999999999.9999*************************************888888887651110334455588899****976555555544444.....22333....3588899999999999988775 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.7e-08   5.3e-05       4     102 ..       3      97 ..       1     128 [. 0.81

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.7e-08
   PF04670.7   4 LmGksgsGKtSmrsi.iFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeil 102
                 ++G + +GKtS+ +   + + +     ++ga+   +  ++  +  ++l+lwD+ Gqe+f +      +   ++   + i VfD+++++  ++++++q+ l
  MMETSP0890-20130614|1330_1   3 VVGDTDAGKTSLSERfCYGEAPTAAHPTIGASFLQKVVNIPESPPVVLQLWDTAGQERFRSM-----APMYYRGATAAIIVFDVSKENAWNTIQTWQKDL 97 
                 78**********876267888888889999999999999988999***********999877.....589999999*********888777777777644 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.5e-07    0.0013       3     106 ..       2      95 ..       1     113 [. 0.70

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.5e-07
                 EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE..ETTE.....EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHHH.TCC CS
  PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrditenev..kkek.....iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasavlkeadkellnele.akk 106
                 ++vG + +GK++L  + +    a ++++p    +  ++ v  +  +     ++l+Dt+G           e+++++     + a ++++v+d+s+      ++ +n ++ ++k
  MMETSP0890-20130614|1330_1   2 VVVGDTDAGKTSLSERFCYG-EAPTAAHPTIGASFLQKVVniP--EsppvvLQLWDTAGQ----------ERFRSMAPMYyRGATAAIIVFDVSK------ENAWNTIQtWQK 95 
                 79****************75.6799999999999966555432..23466446******2..........2455555555599999999999653......245555533333 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.3e-06     0.012     198     242 ..     129     173 ..      72     183 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.3e-06
                 -SBTTB--EEEE-BTTTTB--HHHHHHHHHHHHHHHH---HHHHH CS
  PF03308.11 198 ekekeWrppvlktsavegeGidelvdaieehrevlektGlleekr 242
                  + ++W +    tsa++g+G+del++++ +   +l ++ +++ ++
  MMETSP0890-20130614|1330_1 129 ASCSSWDATFHLTSATTGQGVDELFTTVARRGATLAAQNQRQMRQ 173
                 34689************************9999888775555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 569.13
//
Query:       MMETSP0890-20130614|1331_1  [L=1010]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-33  115.0   0.0    3.3e-17   62.8   0.0    2.7  2  PF00005.22 ABC transporter
    9.3e-20   71.6   0.5    2.2e-06   27.7   0.0    4.6  4  PF13304.1  AAA domain
    4.6e-17   61.9   6.0    6.2e-17   61.5   4.1    1.2  1  PF12698.2  ABC-2 family transporter protein
      2e-09   36.7   0.1     0.0021   17.4   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
    3.8e-08   32.7   0.1     0.0021   17.2   0.0    3.3  3  PF02463.14 RecF/RecN/SMC N terminal domain
      1e-07   32.3   0.2     0.0075   16.5   0.0    2.6  2  PF13476.1  AAA domain
    9.4e-06   24.7   0.0      0.027   13.5   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
    0.00011   21.9   0.0       0.79    9.5   0.0    3.1  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    0.00014   22.2   0.3     0.0056   17.0   0.0    2.7  2  PF13732.1  Domain of unknown function (DUF4162)
    0.00038   20.3   0.3        1.3    8.9   0.1    2.8  2  PF01926.18 50S ribosome-binding GTPase
     0.0014   17.8   0.6        1.1    8.3   0.0    2.8  3  PF04310.7  MukB N-terminal
     0.0014   18.9   0.6        1.7    8.9   0.0    2.8  2  PF13191.1  AAA ATPase domain
     0.0035   16.9   0.2       0.73    9.4   0.0    2.8  2  PF13245.1  Part of AAA domain
     0.0053   15.7   0.0         13    4.5   0.0    3.3  3  PF13175.1  AAA ATPase domain
     0.0083   15.5   0.1        4.8    6.4   0.0    2.4  2  PF01580.13 FtsK/SpoIIIE family
  ------ inclusion threshold ------
      0.013   15.5   0.1        9.5    6.2   0.0    2.9  2  PF13401.1  AAA domain
      0.015   14.8   0.3        9.3    5.6   0.0    3.7  4  PF13604.1  AAA domain
      0.017   14.1   0.5       0.46    9.4   0.0    2.4  2  PF04548.11 AIG1 family
      0.028   13.0   0.0        1.2    7.7   0.0    2.3  2  PF03308.11 ArgK protein
      0.087   12.1   0.1        2.5    7.3   0.0    3.1  4  PF01695.12 IstB-like ATP binding protein
      0.089   12.4   0.4        6.3    6.4   0.0    2.4  2  PF00350.18 Dynamin family
        0.1   12.3   0.0         16    5.2   0.0    2.6  2  PF13671.1  AAA domain
       0.13   11.3   0.1        4.3    6.3   0.0    2.3  2  PF12846.2  AAA-like domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   5.5e-20   3.3e-17       1     118 []      44     168 ..      44     168 .. 0.86
   2 !   49.6   0.0   6.7e-16     4e-13       1     117 [.     708     827 ..     708     828 .. 0.87

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 5.5e-20
                 HHHHHHHTTSS------EEE-....--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--.....-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdn..drkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk.....tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 ST +++ltg+l  ++ +        ++++ +++++++r   g++pq+  lf  lt +e+ld + + k      ++++++e+l+k+ l++++ + ++++LSgG++++v+ A al+ +++++lLDEPt+
  MMETSP0890-20130614|1331_1  44 STAINVLTGLLPSDARSADGGAliYGHAI-RTEMDAVRrlTGVCPQHDVLFDLLTSFETLDLFASLKGsssldAKREATELLNKFHLSHRAGH-KAHELSGGMRRKVSCAVALCGRSRFVLLDEPTA 168
                 899********988666665533423223.3444555557*********************99999889************************.********************************6 PP

  == domain 2    score: 49.6 bits;  conditional E-value: 6.7e-16
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHH.EEEE-------.--BHHHHHH----S--.....-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklr.igyipqdpllfpeltvrenldmakeekk.....tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPt 117
                 ST ++++ +   pt+g+i v+ +++  l + ++++ + +g++ q + l+  l++ + l+ + +        ++  +e++++++ l  +++k  ++ LSgG+k+++a A a++ +p+l+lLDEP 
  MMETSP0890-20130614|1331_1 708 STTINCIIRAHFPTAGDILVNgHSV--LDDFEAAA-KsLGVVNQGNSLWDLLSCADHLKLFAQLRGvpsaeAKLLVEAAIDQLELRPHKNK-LAHRLSGGMKRKLATAIAIVGDPELVLLDEPS 827
                 9********************4444..33333333.25***********8888888888777665588888****************9999.*******************************7 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0085       5.1       4      24 ..      35      55 ..      32      79 .. 0.81
   2 !   27.7   0.0   3.7e-09   2.2e-06     233     298 ..     136     197 ..      90     200 .. 0.81
   3 !    8.2   0.0    0.0033       1.9       3      19 ..     698     714 ..     696     737 .. 0.83
   4 !   23.4   0.0   7.7e-08   4.6e-05     234     297 ..     797     856 ..     777     861 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0085
   PF13304.1  4 iiGpNgsGKSnlLkaldflfr 24
                + G Ng+GKS+ + +l +l+ 
  MMETSP0890-20130614|1331_1 35 LLGHNGAGKSTAINVLTGLLP 55
                7899************99965 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 3.7e-09
   PF13304.1 233 plsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298
                  +++lS G++r  + + al  +    +++l+DEp +g++  + r+l++ll ++++ g ++++TTH 
  MMETSP0890-20130614|1331_1 136 KAHELSGGMRRKVSCAVALCGRS---RFVLLDEPTAGMDALARRELWDLLADSKR-GRTVLLTTHY 197
                 57899******965555555555...*****************************.*********5 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0033
   PF13304.1   3 viiGpNgsGKSnlLkal 19 
                 ++ G+Ng+GKS+ + ++
  MMETSP0890-20130614|1331_1 698 GLLGANGAGKSTTINCI 714
                 689*********99998 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 7.7e-08
   PF13304.1 234 lsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTH 297
                 +++lS G+kr la + a+  ++    ++l+DEp +gL+P   r+++++l+ + +    +++T+H
  MMETSP0890-20130614|1331_1 797 AHRLSGGMKRKLATAIAIVGDP---ELVLLDEPSAGLDPVSRRNMWNVLRTTME-ARAVVLTSH 856
                 4678******988888888888...99**********************77777.7789****9 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   4.1     1e-19   6.2e-17     141     340 ..     384     604 ..     241     607 .. 0.80

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 1e-19
   PF12698.2 141 aapvnvetlplfnksknyasflaglllfilifigaliialsiveEkesrikelqlvsgvspfaywlskilgdllvgliqlllilllafglegipfg...nlllllllfllfglayialgyllsslfksestaqlvisilil........llsgfflglfp.leslp.....sflkwifs.iiPffslgdgllriitgdlse........illsliiLllfavvyll 340
                 aa + +++ +  +k++  ++++ + +++  ++i+ +++a  +v Ekes+++ ++ v+g+ ++ayw++++lgd+ ++li++  + + af+     ++   + + ++ + l+fg + ++ +y+ls++f s++ + + ++ + +        ++++++l++   + s +     ++  w++  + P  ++ +g+++i+++   +        ++  +iiL++++ +++ 
  MMETSP0890-20130614|1331_1 384 AAGFAINKYQVISKNDKQNDMITAAIVAGSFLIYPALVAEQVVAEKESKLRNVLTVAGCEVRAYWIGNFLGDYCLFLIVAGACWIAAFS---SALTrwlENAGIFYFTLVFGAFLLSYSYALSYAFESAKRCVVTVPGIQIaqllapqiIALIVYLVIRGyIKSFHfdqvqGMELWLLTlLSPQGAFWLGFYNIASTI--PlpqkycprFYEIMIILAIEFYIFTT 604
                 56677888888999999999****9**9*************************************************999888888999...444422466889999999999999999**********888888888877777776555555555552244444444441444454442669999999999999644..22346666677888888888887765 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.7e-06    0.0034      15      48 ..      23      55 ..      15      62 .. 0.76
   2 !   17.4   0.0   3.6e-06    0.0021      13      49 ..     685     720 ..     682     731 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.7e-06
   PF13555.1 15 htveidpkgkntlltGasGsGKSTllDAiqtlLv 48
                 t+++++++  + l G++G+GKST +  ++ lL 
  MMETSP0890-20130614|1331_1 23 LTFDMRQDQ-IFSLLGHNGAGKSTAINVLTGLLP 55
                567776554.899************987776664 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.6e-06
   PF13555.1  13 dghtveidpkgkntlltGasGsGKSTllDAiqtlLvp 49 
                 ++ t+++++ g+++ l Ga+G+GKST +  i+    p
  MMETSP0890-20130614|1331_1 685 HDCTFRVAR-GEVFGLLGANGAGKSTTINCIIRAHFP 720
                 556889985.66****************998876655 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.5e-06    0.0021      23     203 ..      29     202 ..      14     217 .. 0.80
   2 ?    3.4   0.2     0.058        34      28      44 ..     698     714 ..     685     717 .. 0.85
   3 !    7.4   0.0    0.0034         2     136     205 ..     799     864 ..     776     877 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.5e-06
                 --SEEEE--------HHHHHHHHHH------.-------TTSS----------EE..EEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  23 sksftaivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksa..eveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemle 203
                 ++++ +++G+NG+GKs  ++ +  +L    +   rs++  +li+  ++ +  + a  +++ +  ++d  + + ++  ++   ++ kg+s+   +++  +  +  +l ++ag + ++LSgG +  v++a+      + ++ ++llDe  a +D+  ++++ +ll  +++   ++ +++  +   
  MMETSP0890-20130614|1331_1  29 QDQIFSLLGHNGAGKSTAINVLTGLLP---S-DARSADGGALIYG-HAIRTEMDAvrRLTGVCPQHDVLFDLLTSFETLDLFASLKGSSSLDAKREATELLNKFHLSHRAGHKAHELSGGMRRKVSCAVA----LCGRSRFVLLDEPTAGMDALARRELWDLLADSKRGRTVLLTTHYMDEAD 202
                 45677899********98888866666...3.679*********9.55555555511455555566666777777788889999999999999999999999999999******************9876....578899************************9999999999998766555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.058
                 EE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
  PF02463.14  28 aivGpNGSGKsnvldAi 44 
                  ++G+NG+GKs  ++ i
  MMETSP0890-20130614|1331_1 698 GLLGANGAGKSTTINCI 714
                 589********998877 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0034
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                  LSgG k  +a     Ai  v    l+llDe  a LD   ++++ ++l+++ +   ++ +s+  e +e  
  MMETSP0890-20130614|1331_1 799 RLSGGMKRKLAT----AIAIVGDPELVLLDEPSAGLDPVSRRNMWNVLRTTMEARAVVLTSHLMEEVEAL 864
                 578887765444....4445677779*************************9998888888877766655 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-05    0.0075       6      43 ..      16      54 ..      12      80 .. 0.83
   2 !   13.0   0.0   0.00015     0.089      21      40 ..     696     715 ..     684     739 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.3e-05
   PF13476.1  6 NfrsfkdqeidF.skgltlItGpNGsGKTTildAiclaL 43
                Nf    ++++d  +++++ + G+NG+GK+T ++ ++ +L
  MMETSP0890-20130614|1331_1 16 NFIAVNNLTFDMrQDQIFSLLGHNGAGKSTAINVLTGLL 54
                444448899999988****************99888766 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00015
   PF13476.1  21 ltlItGpNGsGKTTildAic 40 
                 ++ + G NG+GK+T +++i 
  MMETSP0890-20130614|1331_1 696 VFGLLGANGAGKSTTINCII 715
                 78899*************96 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.5e-05     0.027      26      57 ..      20      52 ..      12      75 .. 0.88
   2 !    8.6   0.0    0.0014      0.86      27      59 ..     685     718 ..     663     738 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.5e-05
                -HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11 26 leelaellkd.ktsvlvGqSGvGKSsLinallp 57
                +++l++ +++ ++  l+G+ G+GKS+ in+l++
  MMETSP0890-20130614|1331_1 20 VNNLTFDMRQdQIFSLLGHNGAGKSTAINVLTG 52
                567777787779******************986 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0014
                 HHHHHHCTT.SBEEEE-------HHHHHHH---- CS
  PF03193.11  27 eelaellkd.ktsvlvGqSGvGKSsLinallpel 59 
                 ++ ++ ++  ++  l+G  G+GKS+ in ++  +
  MMETSP0890-20130614|1331_1 685 HDCTFRVARgEVFGLLGANGAGKSTTINCIIRAH 718
                 55555555448899**************998765 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0013      0.79      64      89 ..     158     183 ..     135     184 .. 0.89
   2 !    8.8   0.0    0.0022       1.3      64      89 ..     818     843 ..     791     844 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0013
   PF13558.1  64 irlvfLDEAFsklDeeniasllellr 89 
                  r+v+LDE+++++D+  +++l +ll 
  MMETSP0890-20130614|1331_1 158 SRFVLLDEPTAGMDALARRELWDLLA 183
                 589******************99986 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0022
   PF13558.1  64 irlvfLDEAFsklDeeniasllellr 89 
                 ++lv+LDE+ ++lD+ +++++ ++lr
  MMETSP0890-20130614|1331_1 818 PELVLLDEPSAGLDPVSRRNMWNVLR 843
                 89********************9997 PP

>> PF13732.1  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.33     2e+02      62      82 ..     301     322 ..     245     323 .. 0.79
   2 !   17.0   0.0   9.4e-06    0.0056       1      84 []     880     974 ..     880     974 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.33
   PF13732.1  62 skge.irkFeeeePSLnDIFie 82 
                 ++++ ++ +   + +L+D+Fi 
  MMETSP0890-20130614|1331_1 301 AEAKvVEDYGLAITTLEDVFIA 322
                 44455999999*********95 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 9.4e-06
   PF13732.1   1 GklkeiKkqygknt.leve.tsgdeee.leel......pgvesvekkedgkveikledeesa.nelleeltskge.irkFeeeePSLnDIFiekv 84 
                 G+++++K++ g++  l +   ++++++ ++ l      +++ ++  ++ g + +++++e+++  ++++ l +++e i ++++ +PSL+ +Fi++v
  MMETSP0890-20130614|1331_1 880 GTIQHLKNSLGSHYeLDIVgIKKSNADpIHSLvydifgKDAVNIASTSGGLLCYEVKKEAVNvGKVFDTLEKHKEiISEYSIAQPSLESVFIKTV 974
                 77888888888744344333333332234444455566666777778899899999999755489********999*****************98 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0028       1.7       3      21 ..      34      52 ..      32      81 .. 0.84
   2 !    8.9   0.1    0.0022       1.3       2      22 ..     697     717 ..     696     732 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0028
                EEE--TT---HHHHHHHHC CS
  PF01926.18  3 aivGrpNvGKStLinaLtg 21
                 ++G+  +GKSt in Ltg
  MMETSP0890-20130614|1331_1 34 SLLGHNGAGKSTAINVLTG 52
                689**************96 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0022
                 EEEE--TT---HHHHHHHHCS CS
  PF01926.18   2 vaivGrpNvGKStLinaLtge 22 
                 ++++G   +GKSt in ++++
  MMETSP0890-20130614|1331_1 697 FGLLGANGAGKSTTINCIIRA 717
                 689***************965 PP

>> PF04310.7  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0057       3.4      20      54 ..      22      56 ..      12      60 .. 0.76
   2 ?   -3.0   0.0       5.5   3.2e+03     105     150 ..     391     436 ..     387     440 .. 0.81
   3 !    8.3   0.0    0.0019       1.1      29      54 ..     696     721 ..     684     795 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0057
                EEEE-H.HHHHHHH--------HHHHHHHHHHHS-- CS
   PF04310.7 20 artfdl.delvttlsggngagksttmaafvtalipd 54
                  tfd+ ++ + +l g ngagkst++   +t l+p 
  MMETSP0890-20130614|1331_1 22 NLTFDMrQDQIFSLLGHNGAGKSTAINV-LTGLLPS 56
                468998446788999********99865.6777774 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.5
                 EEEE-----S-EEEE-EEEE---TT--HHHHHEE--SSS--EE--H CS
   PF04310.7 105 klqqvagrdkkvdikpfliqglpssvkptdllvetlsekqarvlql 150
                 k q ++  dk+ d+   +i      + p+ +  + ++ek+++++++
  MMETSP0890-20130614|1331_1 391 KYQVISKNDKQNDMITAAIVAGSFLIYPALVAEQVVAEKESKLRNV 436
                 5566777899999999999999999999999999999999998876 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0019
                 HHHH--------HHHHHHHHHHHS-- CS
   PF04310.7  29 vttlsggngagksttmaafvtalipd 54 
                 v  l g ngagkstt+ +++ a  p 
  MMETSP0890-20130614|1331_1 696 VFGLLGANGAGKSTTINCIIRAHFPT 721
                 56789***************999886 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0078       4.6      25     102 ..      32     115 ..      18     192 .. 0.68
   2 !    8.9   0.0    0.0028       1.7      18      53 ..     690     724 ..     682     853 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0078
   PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..lpysaiiqa.....lrellrqlltelaaelggwreallaalg 102
                 ++ ++G+ G GKS+ ++  ++ +l +++r a g+   ++    +++ a++ +     ++++l  llt  ++    +  + +++l+
  MMETSP0890-20130614|1331_1  32 IFSLLGHNGAGKSTAINV-LTGLLPSDARSADGGALIYGHAirTEMDAVRRLtgvcpQHDVLFDLLTSFETLDLFASLKGSSSLD 115
                 6789************77.777888899999888888888765544444444555555555555555555544444444444444 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0028
   PF13191.1  18 rvsegsplllvtGpsGiGKSsLlrelakpillerlr 53 
                 rv++g+ ++ ++G+ G GKS+ +++++++ +  ++ 
  MMETSP0890-20130614|1331_1 690 RVARGE-VFGLLGANGAGKSTTINCIIRAHFPTAGD 724
                 578888.8889**************66655533332 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.055        33      10      36 ..      30      57 ..      23      83 .. 0.81
   2 !    9.4   0.0    0.0012      0.73       8      36 ..     693     722 ..     689     744 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.055
   PF13245.1 10 npllvvtGgPGtGKTttlaaiiaall..a 36
                ++++ + G  G+GK+ t++++   ll  +
  MMETSP0890-20130614|1331_1 30 DQIFSLLGHNGAGKS-TAINVLTGLLpsD 57
                67888999*******.*****99988553 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0012
   PF13245.1   8 agnpllvvtGgPGtGKTttlaaiiaall..a 36 
                 +   ++ + G  G+GK+tt+ +ii+a++  a
  MMETSP0890-20130614|1331_1 693 R-GEVFGLLGANGAGKSTTINCIIRAHFptA 722
                 4.6788999********99999999998541 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.022        13      17      42 ..      22      50 ..      12      63 .. 0.72
   2 ?    3.2   0.0     0.057        34     372     410 ..     160     196 ..     154     198 .. 0.92
   3 ?    3.5   0.0     0.044        26      27      43 ..     699     724 ..     682     746 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.022
   PF13175.1 17 einlde...slnviiGeNgsGKttILeal 42
                ++ +d    ++ ++ G+Ng+GK+t +  l
  MMETSP0890-20130614|1331_1 22 NLTFDMrqdQIFSLLGHNGAGKSTAINVL 50
                444444557888***********988765 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.057
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiitTH 410
                 ++l+DEP a +++ +++el + L +  +  + ++++tTH
  MMETSP0890-20130614|1331_1 160 FVLLDEPTAGMDALARRELWDLLADSKR--GRTVLLTTH 196
                 89*********************99888..********* PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.044
   PF13175.1  27 iiGeNgsGKttILeal.........e 43 
                 + G+Ng+GK+t + ++         +
  MMETSP0890-20130614|1331_1 699 LLGANGAGKSTTINCIirahfptagD 724
                 68**************6655555554 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0089       5.3      27      58 ..      19      50 ..       8      52 .. 0.87
   2 !    6.4   0.0    0.0081       4.8      44      61 ..     700     717 ..     698     722 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0089
  PF01580.13 27 sgkplvadlvkaphlLiaGatgsGKStflrtL 58
                  ++l++d+++      +G +g+GKSt++++L
  MMETSP0890-20130614|1331_1 19 AVNNLTFDMRQDQIFSLLGHNGAGKSTAINVL 50
                56889999999999999************987 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0081
  PF01580.13  44 aGatgsGKStflrtLils 61 
                 +Ga+g+GKSt+++ +i +
  MMETSP0890-20130614|1331_1 700 LGANGAGKSTTINCIIRA 717
                 7**************986 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.016       9.5       3      37 ..      29      87 ..      27     199 .. 0.67
   2 ?    5.9   0.0     0.019        11       9     112 ..     699     847 ..     693     864 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.016
   PF13401.1  3 sagilvvtGesGvGKTtllrrlarqldeeaeaae........................k 37
                + +i  + G  G+GK+t+++ l   l+  a  a+                        +
  MMETSP0890-20130614|1331_1 29 QDQIFSLLGHNGAGKSTAINVLTGLLPSDARSADggaliyghairtemdavrrltgvcP 87
                6789999************9998888776666666666666655555555555555441 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.019
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae.....................................karvv..fveapast..spkellqkllsalglpakgrltteellealqealrrrrt.....rlliiDEaqr.L....seealeelrslld 112
                 + G  G+GK+t+++ + r +    +++                                      +   +  f ++      ++k l ++   +l+l +++++ +++l   + ++l+++       +l+++DE    L    + ++++ lr+ ++
  MMETSP0890-20130614|1331_1 699 LLGANGAGKSTTINCIIRAH----FPTAgdilvnghsvlddfeaaakslgvvnqgnslwdllscaD--HLklFAQLRGVPsaEAKLLVEAAIDQLELRPHKNKLAHRLSGGMKRKLATAIAivgdpELVLLDEPSAgLdpvsRRNMWNVLRTTME 847
                 56999********9999986....222245667765555555555555555555555555555322..222233333333334555555555555555555444444445555555555557888888888887777765533777777777666 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.016       9.3      17      44 ..      29      56 ..      19      83 .. 0.80
   2 ?   -0.6   0.0       1.3   7.7e+02      44      71 ..     186     213 ..     171     217 .. 0.84
   3 ?    3.7   0.0     0.061        36      19      42 ..     695     718 ..     688     733 .. 0.78
   4 ?   -1.6   0.0       2.5   1.5e+03      91     125 ..     815     853 ..     782     854 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.016
   PF13604.1 17 gdrvavvqGpAGtGKttvlkalrealea 44
                +d++  + G+ G+GK+t+++ l+ +l +
  MMETSP0890-20130614|1331_1 29 QDQIFSLLGHNGAGKSTAINVLTGLLPS 56
                55666667************99877665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.3
   PF13604.1  44 aagkrvvglAptgkaakvLeeelgiear 71 
                 ++g++v++ ++    a+vL++++gi ++
  MMETSP0890-20130614|1331_1 186 KRGRTVLLTTHYMDEADVLGDRIGIMSH 213
                 36999*******************9985 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.061
   PF13604.1  19 rvavvqGpAGtGKttvlkalreal 42 
                  v  + G+ G+GK+t+++ + +a+
  MMETSP0890-20130614|1331_1 695 EVFGLLGANGAGKSTTINCIIRAH 718
                 466677***********9877665 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 2.5
   PF13604.1  91 ldaktllvvDEAgm....vdtrqlarlleaaekagakvv 125
                 + + +l+++DE +     v+ r++ ++l+++ +a+a+v+
  MMETSP0890-20130614|1331_1 815 VGDPELVLLDEPSAgldpVSRRNMWNVLRTTMEARAVVL 853
                 677789999996644466999999999999999998875 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.12        73       5      20 ..      35      50 ..      32      56 .. 0.89
   2 ?    9.4   0.0   0.00077      0.46       5      24 ..     699     718 ..     697     739 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.12
                EE-------TT---TT CS
  PF04548.11  5 lvGktgnGkSaTgNsi 20
                l+G  g+GkS+++N +
  MMETSP0890-20130614|1331_1 35 LLGHNGAGKSTAINVL 50
                89************76 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00077
                 EE-------TT---TTTTS- CS
  PF04548.11   5 lvGktgnGkSaTgNsilgkk 24 
                 l+G  g+GkS+T+N i++ +
  MMETSP0890-20130614|1331_1 699 LLGANGAGKSTTINCIIRAH 718
                 89**************9865 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.068        40      30      51 ..      31      52 ..      20      60 .. 0.82
   2 ?    7.7   0.0     0.002       1.2      25      51 ..     690     716 ..     678     726 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.068
                EEE--B-------HHHHHH--- CS
  PF03308.11 30 lvvGltGvPGaGkstlveklik 51
                ++  l G  GaGkst+++ l+ 
  MMETSP0890-20130614|1331_1 31 QIFSLLGHNGAGKSTAINVLTG 52
                677889***********99875 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.002
                 G----EEE--B-------HHHHHH--- CS
  PF03308.11  25 kaGralvvGltGvPGaGkstlveklik 51 
                 +  r +v Gl G  GaGkst+++ +i 
  MMETSP0890-20130614|1331_1 690 RVARGEVFGLLGANGAGKSTTINCIIR 716
                 5678899***************98875 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1   6.1e+02      44      61 ..      27      44 ..      18      48 .. 0.84
   2 ?   -1.4   0.0       1.9   1.2e+03     108     148 ..     157     196 ..     144     200 .. 0.83
   3 ?   -2.9   0.0       5.8   3.4e+03      44      61 ..     691     708 ..     682     711 .. 0.83
   4 ?    7.3   0.0    0.0042       2.5      98     149 ..     807     857 ..     793     863 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1
  PF01695.12 44 veqaenlvllGpsGvGKt 61
                ++q + + llG+ G+GK+
  MMETSP0890-20130614|1331_1 27 MRQDQIFSLLGHNGAGKS 44
                67888899*********8 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.9
  PF01695.12 108 kvdllilDdlgllplseeeakllfellskryerrsiiltsn 148
                 + + + lD+ + + ++  ++  l+ ll++    r ++lt+ 
  MMETSP0890-20130614|1331_1 157 RSRFVLLDEPT-AGMDALARRELWDLLADSKRGRTVLLTTH 196
                 66777888864.67899999****************99986 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 5.8
  PF01695.12  44 veqaenlvllGpsGvGKt 61 
                 v++ e + llG  G+GK+
  MMETSP0890-20130614|1331_1 691 VARGEVFGLLGANGAGKS 708
                 567788889********8 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0042
  PF01695.12  98 rleralkrlakvdllilDdlgllplseeeakllfellskryerrsiiltsnl 149
                 +l++a++ +   +l+ lD+   + l++ ++  ++++l + +e r+++lts l
  MMETSP0890-20130614|1331_1 807 KLATAIAIVGDPELVLLDEPS-AGLDPVSRRNMWNVLRTTMEARAVVLTSHL 857
                 5666677777889*****965.6788889999******************87 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.088        52       3      20 ..      35      52 ..      34      57 .. 0.91
   2 ?    6.4   0.0     0.011       6.3       3      29 ..     699     725 ..     698     731 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.088
                EE--TT---HHHHHHH-- CS
  PF00350.18  3 vvGsqSaGKSSllnaLlg 20
                ++G+  aGKS+ +n L g
  MMETSP0890-20130614|1331_1 35 LLGHNGAGKSTAINVLTG 52
                689************987 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.011
                 EE--TT---HHHHHHH----------- CS
  PF00350.18   3 vvGsqSaGKSSllnaLlgedilprgpg 29 
                 ++G+  aGKS+ +n ++ +++   g +
  MMETSP0890-20130614|1331_1 699 LLGANGAGKSTTINCIIRAHFPTAGDI 725
                 679999*************98766655 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.046        27       4      19 ..      35      50 ..      32      86 .. 0.86
   2 ?    5.2   0.0     0.026        16       4      32 ..     699     731 ..     696     856 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.046
   PF13671.1  4 lvGlpGsGKstlaerl 19
                l G+ G+GKst ++ l
  MMETSP0890-20130614|1331_1 35 LLGHNGAGKSTAINVL 50
                68*********99866 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.026
   PF13671.1   4 lvGlpGsGKstlaerllkklg....yvrlsqdt 32 
                 l G+ G+GKst ++ +++++      ++++   
  MMETSP0890-20130614|1331_1 699 LLGANGAGKSTTINCIIRAHFptagDILVNGHS 731
                 689********9766655443222266666555 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.11        62       6      22 ..      35      51 ..      32      67 .. 0.85
   2 ?    6.3   0.0    0.0073       4.3       6      27 ..     699     720 ..     696     865 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.11
   PF12846.2  6 ilGppGsGKSvllkklv 22
                +lG  G+GKS++++ l+
  MMETSP0890-20130614|1331_1 35 LLGHNGAGKSTAINVLT 51
                68999*********995 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0073
   PF12846.2   6 ilGppGsGKSvllkklvlqlla 27 
                 +lG  G+GKS++++ +++++  
  MMETSP0890-20130614|1331_1 699 LLGANGAGKSTTINCIIRAHFP 720
                 789*************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.62u 0.36s 00:00:01.98 Elapsed: 00:00:01.36
# Mc/sec: 1779.65
//
Query:       MMETSP0890-20130614|1337_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-68  231.1  19.0    1.6e-42  145.6   5.0    2.8  2  PF00654.15 Voltage gated chloride channel
    5.9e-12   44.9   0.2    3.4e-05   23.3   0.0    2.9  2  PF00571.23 CBS domain
     0.0074   16.0   0.1     0.0074   16.0   0.1    5.3  5  PF10518.4  TAT (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> PF00654.15  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   5.0   3.6e-46   1.6e-42      10     196 ..       2     262 ..       1     276 [. 0.84
   2 !   89.6   2.7   3.9e-29   1.8e-25     194     354 ..     314     511 ..     300     512 .. 0.75

  Alignments for each domain:
  == domain 1    score: 145.6 bits;  conditional E-value: 3.6e-46
                 CCCC-CCG-----TTT---TTSSS--..-HHHHHHHHH------------------TTT-------HHH.....................................................HH......TT.---HHHHH.HHH-------HHHHT-ST---TTTTTTTS-TT--TTHHHHH---HHHHHHHHHHSTT--S.......-.T..---..........--GGGHHHHHH----------CCCHHHHHHHHHHHCH- CS
  PF00654.15  10 vkrvapeaagsGipevkaalngvkgp..lslrtllvkvvalvlavgsGlslGreGplvqiGAavgsgls.....................................................rl......lklsrndrrrr.lvaaGaAAGlAaaFnaPlgGvlfalEelsrdlslrallpvlvaslvaalvlrlllgsepa.......fge..vtalf.......alsllelilfvllGilgGllGalFvrlllkveklfrklk 196
                 v +++p+a+gsGip vka+lng + +  ls+r++lvk+++++lavg+G+ lG eGplv++GA++gs +                                                       +       +++r+d +rr ++++G+A+G+AaaF+aP+gGvlf+lEe s+ +s ++l+++lv + +a++++ +l++           +g   +           ++sl  ++++vllG+lgGl+Ga+F+ + +++ k+++ l 
  MMETSP0890-20130614|1337_1   2 VAFISPGASGSGIPVVKAYLNGIRLEgcLSMRVFLVKFFGTALAVGAGATLGPEGPLVHLGAMCGSFFTggldptrfiiilgkglsapffkltafihdwfyissekgrfsfpsteedngkteNIkaqtppPQFFRSDVDRRdFLSIGVACGFAAAFGAPIGGVLFSLEEASSFWSNELLWRSLVGTSCATFTALVLKHGI-IglkqiarYGLisL---HtnadeidDVSLALVPMAVLLGCLGGLVGAIFNISWYRAMKYRQYLA 262
                 67899********************************************************************************999999999999888888888777777666666655511666677555778888888*****************************99999********************3332.24445555442221...245567779************************99999998766653 PP

  == domain 2    score: 89.6 bits;  conditional E-value: 3.9e-29
                 CH-.CHHHHHHH.-----------TTTSS......................................CC..C-----TCHHHHCTS---HHHHHH...HHHHHHHHHHHHHT-------HHHHHH-HHHHHHHHHHHHHHH-CTSST....HHCCC-----HHHHCCS-CCHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  PF00654.15 194 klk.klkvpkrl.epalvglltgllalll......................................pansvlgggyallasllsgstlllsllllllllvlkllataltlgsglpgGifvPsLviGAalGrlvglvlallfpgdass.dpgayaliGaaaflagvtrapltaivilfEltgslelllplmlavaiAklvad 354
                   + k  v  r+  ++++++lt++l + +                                       a+ ++g+ ++++ ++l+  +  ls ++l +  +l l+  +l++gs+lpgG+f+P++++GA+lG++++ +  ++ +    + +    a++Ga+a+lagv+r +++++vi++E tg+++ll+p++++v +A+++++
  MMETSP0890-20130614|1337_1 314 ATRaKAFV--RViDAVIGVALTTILFYGValsanswacvsrdrdddgwlqdndftvrftcghdhvheLASLWFGTREKAITTILEATNGELSAASLSISGILSLVTLCLSFGSALPGGLFLPLIYCGACLGSALARLPVIVQS--PLNiTRRHSAVLGAVALLAGVQRSTVSLCVIMLEGTGNTSLLIPIIIVVCLARFIGN 511
                 22213333..44499999999999999985655555555555555555555555555555555555423345555555588888666667*********************************************66666623..33446799********************************************99876 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.5e-09   3.4e-05      17      54 ..     560     597 ..     543     599 .. 0.90
   2 !   18.7   0.0     2e-07   0.00091       4      48 ..     686     730 ..     683     731 .] 0.95

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 7.5e-09
                 BHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHH CS
  PF00571.23  17 tlsealeilrktgvsrlpVvDedgrlvGiitlrDllka 54 
                 t+++a +il++ +++++pVv ++++l+G+++++++  +
  MMETSP0890-20130614|1337_1 560 TIAQANSILKESRHGAYPVVADNKKLIGLVLREHVKAL 597
                 8999****************999**********99765 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2e-07
                 HCCSSCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEH CS
  PF00571.23   4 lmtkdvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitl 48 
                 +m + + +v +d ++s+a  ++   g ++l+V++  g lvGi+t+
  MMETSP0890-20130614|1337_1 686 AMVRSPYVVYEDCPVSRAYCLFVTMGARHLLVINHKGDLVGILTR 730
                 688999**************************************8 PP

>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.025   1.1e+02       7      21 ..      39      53 ..      38      57 .. 0.81
   2 !   16.0   0.1   1.6e-06    0.0074       2      25 ..     139     162 ..     138     163 .. 0.91
   3 ?   -1.9   0.9      0.96   4.4e+03      11      25 ..     227     241 ..     226     242 .. 0.80
   4 ?    3.9   0.1     0.013        58       9      23 ..     461     475 ..     461     477 .. 0.89
   5 ?   -3.8   1.2         3   1.4e+04       3      14 ..     610     621 ..     610     621 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.025
   PF10518.4  7 fLkggaaaaAaaalg 21
                f+ +++a++A+a+lg
  MMETSP0890-20130614|1337_1 39 FFGTALAVGAGATLG 53
                677899999999998 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.6e-06
   PF10518.4   2 lsRRqfLkggaaaaAaaalggala 25 
                 + RR+fL  g a++ aaa+g++ +
  MMETSP0890-20130614|1337_1 139 VDRRDFLSIGVACGFAAAFGAPIG 162
                 68******************9976 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.96
   PF10518.4  11 gaaaaAaaalggala 25 
                 +a +++a++lg  ++
  MMETSP0890-20130614|1337_1 227 LALVPMAVLLGCLGG 241
                 688999999998765 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.013
   PF10518.4   9 kggaaaaAaaalgga 23 
                 + +a+++A+a+l+g+
  MMETSP0890-20130614|1337_1 461 RHSAVLGAVALLAGV 475
                 679**********96 PP

  == domain 5    score: -3.8 bits;  conditional E-value: 3
   PF10518.4   3 sRRqfLkggaaa 14 
                 sRR +L+ ++aa
  MMETSP0890-20130614|1337_1 610 SRRVALRLAMAA 621
                 899999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.43s 00:00:01.53 Elapsed: 00:00:02.04
# Mc/sec: 854.51
//
Query:       MMETSP0890-20130614|1342_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   27.7   0.1    1.7e-06   27.5   0.1    1.2  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.038   12.0   0.1      0.038   12.0   0.1    1.1  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   2.5e-10   1.7e-06      10      39 .]      15      44 ..       7      44 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.5e-10
                SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 10 HtspVtcvafspdgpllasgSrDgtirlWd 39
                H++ V ++a s d +l+++++rD  +r+Wd
  MMETSP0890-20130614|1342_1 15 HEDLVDSCALSFDDKLIITACRDLIVRIWD 44
                88***************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.5e-06     0.038     219     253 ..      20      50 ..       2      51 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.5e-06
   PF11715.3 219 asldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  s + s+    ++ +++t +rD  +R+W++  gq+
  MMETSP0890-20130614|1342_1  20 DSCALSF----DDKLIITACRDLIVRIWDTQSGQI 50 
                 5556666....889999*************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:01.13
# Mc/sec: 107.21
//
Query:       MMETSP0890-20130614|1339_1  [L=931]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     3e-177  589.9   0.0     4e-177  589.4   0.0    1.1  1  PF02538.9  Hydantoinase B/oxoprolinase
    1.2e-43  149.2   0.4    3.9e-43  147.5   0.0    2.0  2  PF01968.13 Hydantoinase/oxoprolinase


Domain annotation for each model (and alignments):
>> PF02538.9  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  589.4   0.0  5.9e-181    4e-177       2     519 ..     369     891 ..     368     899 .. 0.94

  Alignments for each domain:
  == domain 1    score: 589.4 bits;  conditional E-value: 5.9e-181
   PF02538.9   2 dpilleifkklfssiaeemgialrktaaSpnikerldfscalfdaeGdlvanathipvHlgsmgsavkelvknredeledgDvlivNdpyiggtHlpDitvltPiFsseelifyvasraHhadvGgitPGSmstnskelfeeGllitskllvkegelkeellekllvenv.yisRipeenlaDlkaqiaanekGidsleklidevgeeevlelikkikdnaeeavkkkiakldeiygakdieve.....dkldkgklikveitinvkkeklkldFd.gtsrqldhnlNavkavvtsavlyvlralvaddiplNdGclrplkiiikkg....sllnprkpaavvagnvetSqrisdvlykalyveaassGtmNnvtfgqggkedgeafqyyETiggGsGagdglngadavhtnmtntrltdiEvlEsryPvlllefsvrkgsGGaGkyrGGnGivRevkflkd.vtvsilserrrvspyGlagGkpgasGenflakktgkevelkgkaslylepgDrlliktpGGgGyger 519
                 dp +l +f+++f+siae+mg +l++ta+S+nikerldfscalf+a+G lvana+h+pvHlg+m+++v+ ++++++++++ gDvl+ Ndp+ gg HlpDitv+tP+F+++++++  asr+HhadvGg tPGSm+++s+ l eeG +i+  +lvk+g + ++ ++  l++ +  + R+  + l+Dlkaqiaan kG   le l +e+g++ vl+++++++ nae  v+ ++++     ++k+   +     + +d+g  i +e+ +n++ +++++dF+ gt +q+ +n Na++av+ +av+y+lr lv+ diplN Gcl p++ii+ +     s+l+p   aav agnv+tSqr++dv++ka++  aas+G mNn+ fg+        f yyETi+gG Gag +++g++av+ +mtntr+td E+lE+ryPv l++f +r+gsGG G+y GG+G+vRe++flk  +  s+l+err + p+Gl+gG+p+++G+n l+ ++g  v l  k ++ l+ gD ++i+tpGGgG+g  
  MMETSP0890-20130614|1339_1 369 DPAQLGVFSHRFMSIAEQMGRTLQRTASSVNIKERLDFSCALFSADGGLVANAPHVPVHLGAMSETVRIQLERFKNNIQSGDVLVANDPNAGGSHLPDITVITPVFDNGKIVYLTASRGHHADVGGTTPGSMPADSTRLEEEGAIISGFKLVKKGIFDDDGIK-ALLRSPvIPCRNERDVLSDLKAQIAANAKGAVLLEALCQEYGQNFVLAYMRHVRANAESCVRAALKAHVADKKNKNAAMVylkaiELMDDGNPICLEVCVNANTGSAVFDFSkGTGPQVFGNWNAPRAVTAAAVMYCLRLLVGRDIPLNSGCLDPVEIILTQAsditSMLAPSPDAAVCAGNVLTSQRVTDVILKAFSACAASQGCMNNFVFGDDS------FGYYETICGGAGAGPSWHGTSAVQVHMTNTRITDLEILEKRYPVYLHKFHIRRGSGGSGQYCGGDGVVREMQFLKSgIVCSLLTERRAIPPFGLNGGQPAMRGRNLLITRKGRIVALPAKVKVSLNFGDAIRIETPGGGGFGST 891
                 8999***************************************************************************************************************************************************************.666666377*************************************************9998877654333322222222345579*************************75799*******************************************99852333799********************************************99......*************************************************************************987366799************************************************************43 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   5.7e-47   3.9e-43     136     288 ..       2     163 ..       1     165 [. 0.97
   2 ?   -1.7   0.0      0.16   1.1e+03      82     113 ..     490     519 ..     486     520 .. 0.81

  Alignments for each domain:
  == domain 1    score: 147.5 bits;  conditional E-value: 5.7e-47
  PF01968.13 136 ggklrvgpgsagvdpgpacyrkGgepltvtDanlvlgklqpedflk..gpdgdqkldselarrafeelakelslk.......veevaegllsvagetmadairvlsvqrgkdkkelplvlfGGagplhaaelaeelgakevipeeyagvlsAvGalladvrk 288
                 +g+l vgp+sa+++pgp+cyrk g  l++tDanlvlg+l p+ f++  g++++ +ld+++ r+ ++ l++++++        +ee+a g+++va+e m+++ir+ls++rg++++ + l++fGGag++h++++a++lg+++ +++ yag+lsA+G++ladv+ 
  MMETSP0890-20130614|1339_1   2 QGALVVGPESAKAHPGPICYRKVGGMLALTDANLVLGRLLPHRFPAifGQNENLPLDTDASRKMMQILTDQVNAWftdthrsLEEIAAGFIRVANEAMCRPIRELSQARGYEPQAHVLACFGGAGAQHVCAVARALGISRAVVHAYAGILSAYGMGLADVVV 163
                 68899****************9888************************************************9999**********************************************************************************975 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.16
  PF01968.13  82 vDvGGTstDvalisdgepelseegevvggvrt 113
                  DvGGT+      +    +l+eeg++++g+++
  MMETSP0890-20130614|1339_1 490 ADVGGTTPGSMPAD--STRLEEEGAIISGFKL 519
                 59****98766666..7778899999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.33u 0.40s 00:00:01.73 Elapsed: 00:00:01.17
# Mc/sec: 1906.84
//
Query:       MMETSP0890-20130614|1338_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.76
# Mc/sec: 1027.91
//
Query:       MMETSP0890-20130614|1344_1  [L=2247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-30  106.5   0.0    2.5e-30  105.5   0.0    1.5  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase
    3.3e-08   32.6   1.6      4e-08   32.4   0.1    2.0  2  PF02260.15 FATC domain


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   3.6e-34   2.5e-30       4     187 ..     725     967 ..     722    1012 .. 0.93

  Alignments for each domain:
  == domain 1    score: 105.5 bits;  conditional E-value: 3.6e-34
                 EEE-----HHHHHHHHHHHHHHHHHHHCTT----.......-----B--SSS----EE--TTEEEHHHHHCH--------T........................................................................THHHHHHHHHSSSHHHHHHHHHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------.----SSSS--SS---HHHHHH- CS
  PF00454.22   4 fifkggadlrqdervlqlvrlfnkllsgegalre.......laaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvkl...................................................felqkkkkpkvgslqlFlkeypdaeeflearsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp.skheekpelvpfrltrpfseem 187
                 f++kg +d + derv+ql++++n+ l++++ +         +a+Y v+pl+  sglie+v+ +  l e++r    +++  +   +r k vk+                                                   f+   +  p++ + ++++    da+++l+ ++++a++l   s++ y lg+gDRhl+N l+d+++g +v +D G c++ +  ++ pe+vpfrlt+ +s+ +
  MMETSP0890-20130614|1344_1 725 FLLKGAEDVHLDERVMQLLEVVNDALFKNAITKAhrqtvphVATYAVLPLSRSSGLIEWVPTTRPLFELYRAEISSRATTAAIAERHKLVKKqgsagasmeypepkairydalpralyaeleklgvvtheprstwpvdklrtaFDVLAQDAPSDLLQRELWRGAVDASAWLARKKNYATRLGASSIAAYALGLGDRHLENVLFDDDDGCVVDVDWGVCFDaGTKLRVPERVPFRLTPVLSKPL 967
                 99***************************99988889************************************99999999888888888889************************************************************************************************************************************************666655 PP

>> PF02260.15  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.96   6.6e+03       7      17 ..    1410    1420 ..    1409    1421 .. 0.88
   2 !   32.4   0.1   5.8e-12     4e-08       5      32 ..    2219    2246 ..    2218    2247 .] 0.94

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.96
  PF02260.15    7 qQVdrLIseAt 17  
                   Q + L ++At
  MMETSP0890-20130614|1344_1 1410 DQTETLLRQAT 1420
                  79999*****9 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 5.8e-12
  PF02260.15    5 veqQVdrLIseAtspeNLaqmYiGWcPf 32  
                   e Q + L++ At+p+ L+ mY GW+P+
  MMETSP0890-20130614|1344_1 2219 SEDQLSTLVKIATDPSELCLMYEGWAPW 2246
                  5899************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.75u 0.47s 00:00:03.22 Elapsed: 00:00:01.61
# Mc/sec: 3344.48
//
Query:       MMETSP0890-20130614|1346_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 231.37
//
Query:       MMETSP0890-20130614|1347_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 398.10
//
Query:       MMETSP0890-20130614|1348_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   14.1   0.0      0.036   13.8   0.0    1.1  1  PF13716.1  Divergent CRAL/TRIO domain
      0.043   13.6   0.0      0.052   13.3   0.0    1.1  1  PF07372.7  Protein of unknown function (DUF1491)
      0.048   13.2   0.0      0.085   12.4   0.0    1.4  1  PF05047.11 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain


Domain annotation for each model (and alignments):
>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.9e-06     0.036      11      60 ..      37      88 ..      32     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.9e-06
   PF13716.1 11 regrpvlvfi.akyl.....pstddydkllkyllhtledeivgkpyvlVyfhtgls 60
                ++g ++l+++ ak+l     +  + +d +l+ ++++ +++    ++v+Vy + g++
  MMETSP0890-20130614|1348_1 37 SDGDQILYVDkAKFLnskdaADEQGVDAILQRIQSYNPKT----QFVIVYTSNGVQ 88
                6899******999997655444448888888888888777....9********986 PP

>> PF07372.7  Protein of unknown function (DUF1491)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.052      16      85 ..       5      74 ..       1      89 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
   PF07372.7 16 leggfaavlrkGdeeAGavlvklrtldgkaqlyerapqllegerawerlaaeedeaevdaylererrfDp 85
                 e+  a+v +kG e AG   v  +++++ a +      l  ++ ++++ ++++de+ vda l+r +++ p
  MMETSP0890-20130614|1348_1  5 PEDYKAFVKEKGLELAGMSWVGFESMGQGAVVSDGDQILYVDKAKFLNSKDAADEQGVDAILQRIQSYNP 74
                57889******************999888888777777779999********************998877 PP

>> PF05047.11  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05     0.085       8      28 ..      65      86 ..      62      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
  PF05047.11  8 nLprlkyhNPavpivvkr.rsg 28
                 L r++ +NP++++v+   ++g
  MMETSP0890-20130614|1348_1 65 ILQRIQSYNPKTQFVIVYtSNG 86
                699*************876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 508.70
//
Query:       MMETSP0890-20130614|1353_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.77
# Mc/sec: 146.27
//
Query:       MMETSP0890-20130614|1350_1  [L=819]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-21   76.0   0.1    7.9e-21   74.0   0.1    2.1  3  PF00072.19 Response regulator receiver domain
    3.8e-21   74.7   0.0    7.7e-21   73.7   0.0    1.5  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    5.4e-10   39.0   2.1    2.6e-09   36.8   0.6    2.7  2  PF00512.20 His Kinase A (phospho-acceptor) domain
    3.1e-06   27.4   0.0    8.5e-06   26.0   0.0    1.8  1  PF13426.1  PAS domain
    4.1e-06   26.6   0.0    1.2e-05   25.2   0.0    1.8  1  PF08447.6  PAS fold


Domain annotation for each model (and alignments):
>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         2   5.5e+03      89     111 ..     446     468 ..     437     469 .. 0.85
   2 ?   -3.1   0.0       2.5   6.7e+03      77      99 ..     515     538 ..     490     543 .. 0.62
   3 !   74.0   0.1   2.9e-24   7.9e-21       1     111 [.     676     793 ..     676     794 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2
                 HHHTT-SEEEESS--HHHHHHHH CS
  PF00072.19  89 alkaGakdflsKpfdpeelvkav 111
                 al+ G  + + Kp++ ++l + v
  MMETSP0890-20130614|1350_1 446 ALSSGKLRLVPKPVSLQQLFNSV 468
                 6778888999********99876 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.5
                 EE.S-TTHHHHHHHHHTT-SEEEE CS
  PF00072.19  77 vt.ahgeeedalealkaGakdfls 99 
                 +t +hg+ e+++    +Ga++f+s
  MMETSP0890-20130614|1350_1 515 FTpDHGTIELIVGRTPLGANGFIS 538
                 455777777778788889999987 PP

  == domain 3    score: 74.0 bits;  conditional E-value: 2.9e-24
                 EEEESSSHHHHHHHHHHHH..HTTSEEEEEESSSHHHHHHHHHHH......ESEEEEESS-TT----HHHHHHHHHTTTSEEEEEES-TTHHHHHHHHHTT-SEEEESS--HHHHHHHH CS
  PF00072.19   1 vlivdDeplvrellrqale..kegyeevaeaddgeealellkekd......pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvkav 111
                 vl+vdD +++r +l+ +l+  + ++ +v ea+dg+ a   +++ +      +D+il+D+ mp+mdG+e+++  r+ +p+++++ +ta+ +++ +  +l+aG+ d+l Kp+ + +l +a+
  MMETSP0890-20130614|1350_1 676 VLVVDDIQTNRFVLTAILRklSPKI-QVFEAEDGRGATIFVQNAQsglhppVDIILMDLHMPNMDGIEATRLCRSIDPSVRVLGFTANTDSTARAVCLEAGMCDVLLKPTTRTALEAAI 793
                 89*****************877899.999*************9999********************************************************************99988 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   2.8e-24   7.7e-21       2     108 ..     497     620 ..     496     623 .. 0.95

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 2.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEC.................TCEEEEEEE-----THHHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEEECTC.T-CEEEEEEE CS
  PF02518.21   2 dedrlrqivselvdNavkateesgeievrvkree.................gelvieVeDnGiGipeedlervfepffqtdddsrkvggtGlGlsivkklvellggeieveske.ggGttvtlrl 108
                 d  rl+qi+s+l++N++k+t+++g+ie+ v r++                   l+i V+D+G+Gi + ++ ++fe f q++   + ++g+GlGl++v klv+l+ g++ v++++ g+Gtt+++ +
  MMETSP0890-20130614|1350_1 497 DAIRLTQIISNLISNSLKFTPDHGTIELIVGRTPlgangfisdalpsiesqCFLTIDVRDTGCGIARSHWSKIFEDFEQAKV-DDIHKGSGLGLAVVTKLVNLYSGQVFVHDSTlGQGTTIRILI 620
                 6789**********************************************999****************************5.8888899*****************99988877******9866 PP

>> PF00512.20  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.6   9.3e-13   2.6e-09       5      68 .]     339     450 ..     336     450 .. 0.83
   2 ?   -2.8   0.0       2.1   5.7e+03      47      59 ..     496     508 ..     484     510 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 9.3e-13
  PF00512.20   5 flagvsHELrtPLtailgnaeller...........vgelteee...........................................lrealeiirdeaerlraliedlLdlsrieag 68 
                 f+  +sHE+rtPL+a+ g++++l++           +      e                                           ++ al+i+ +++ +++++++d+Ld+s + +g
  MMETSP0890-20130614|1350_1 339 FIGKISHEIRTPLHAVFGAVSMLQDeeisdtsidndD------EiqsskelvesvsnksvpkrrnepnhtniptsaqesrrltkaqnRKMALQILSQSIVQVNRVVNDVLDYSALSSG 450
                 8889*********************777776555551......1455555666777777777888888899999999999999999**************************987765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
  PF00512.20  47 deaerlraliedl 59 
                   a rl+++i++l
  MMETSP0890-20130614|1350_1 496 VDAIRLTQIISNL 508
                 56789*****998 PP

>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.1e-09   8.5e-06      10     103 ..     225     327 ..     217     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.1e-09
   PF13426.1  10 dgtilfaNeaalrllGytre...evlgks...irdlfpededeeavalleraleagge..vevelelrrkdgeefpvevtvtpvrde.dgevvgiivilrDit 103
                 + + +f+N+ + + lGy+r    e+  ++   + +l+++ + ++a++ l+ + ++ g   ++ ++++rr d+++++++++++p+ ++ dg++ +i+++ +Dit
  MMETSP0890-20130614|1350_1 225 QAEGEFMNDEFFQQLGYDRRvesEFPAHHpesWFELIDPNDLNRAQTCLNTCEATRGRiaYDLRVTYRRIDNTRIHLRCKGVPLIWSqDGKILAIAGCHTDIT 327
                 5566899**********96555688777766688999999999999999988777776346668888999**************88527*************9 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.3e-09   1.2e-05       3      89 ..     230     321 ..     229     323 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.3e-09
   PF08447.6   3 yvsprveeilGysp...eelgkssyedwldlvhpeDrervrealeel.llkkgevysfeyRirrkdGeyrWveargrvir.dengkpvrvig 89 
                 ++++++ + lGy++   +e+   ++e+w +l+ p D++r++ +l+ + ++++  +y+  + +rr d + ++++++g+++  +++gk++ ++g
  MMETSP0890-20130614|1350_1 230 FMNDEFFQQLGYDRrveSEFPAHHPESWFELIDPNDLNRAQTCLNTCeATRGRIAYDLRVTYRRIDNTRIHLRCKGVPLIwSQDGKILAIAG 321
                 78999*******986656776678***********************9888888*********************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.16u 0.42s 00:00:01.57 Elapsed: 00:00:01.08
# Mc/sec: 1817.24
//
Query:       MMETSP0890-20130614|1367_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-09   36.2   0.1    3.2e-08   33.0   0.0    2.0  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.3e-12   3.2e-08       1      39 []       4      43 ..       4      43 .. 0.97
   2 ?    1.5   0.0     0.019   2.6e+02      12      21 ..      57      66 .]      48      66 .] 0.82

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 2.3e-12
                TEEEEEEESSSSSEEEEEEESSSTEEEEEE.TTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgS.rDgtirlWd 39
                g+ k+tl gHt+ V+  +fs dg++ +s+S +D+t r+Wd
  MMETSP0890-20130614|1367_1  4 GQIKRTLAGHTDEVRFSCFSTDGNRAVSASyYDKTARIWD 43
                5789***********************************9 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.019
                SSEEEEEEES CS
  PF00400.27 12 spVtcvafsp 21
                  V++++f p
  MMETSP0890-20130614|1367_1 57 EYVRSCDFTP 66
                579*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 195.26
//
Query:       MMETSP0890-20130614|1365_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-11   42.5   1.3    4.5e-09   35.7   0.1    2.3  2  PF00400.27 WD domain, G-beta repeat
     0.0001   20.5   0.6    0.00016   19.9   0.3    1.4  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.079   11.6   0.1      0.092   11.4   0.0    1.2  1  PF04053.9  Coatomer WD associated region
      0.095   12.0   0.2       0.28   10.5   0.1    1.6  1  PF13360.1  PQQ-like domain
       0.17   11.3   0.7         17    5.0   0.0    2.6  2  PF01011.16 PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   1.6e-12   4.5e-09       3      39 .]      43      79 ..      41      79 .. 0.94
   2 !    5.9   0.0    0.0041        11       7      29 ..      89     111 .]      84     111 .] 0.74

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.6e-12
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 + t ++H++ ++ va+s dg+++a++S+D+t rlW+
  MMETSP0890-20130614|1365_1 43 SLITVDAHNGDINYVAYSFDGSMVATASDDHTARLWN 79
                678999******************************7 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0041
                 EESSSSSEEEEEEESS.STEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspd.gpllasg 29 
                 l+ H + V++vafs   ++++as+
  MMETSP0890-20130614|1365_1  89 LQ-HDDLVWAVAFSKLnRSVVASC 111
                 55.55*********9876666665 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   5.8e-08   0.00016     232     257 ..      64      89 ..      54     110 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.8e-08
   PF11715.3 232 tfvftlsrDgkLRvWnletgqclrtt 257
                 ++v+t s D++ R+Wn++t++cl+t 
  MMETSP0890-20130614|1365_1  64 SMVATASDDHTARLWNTDTYACLYTL 89 
                 7999******************9986 PP

>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05     0.092     122     168 ..      27      75 ..      20     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
   PF04053.9 122 vksesfisfYDweqkklvrridvkk..vknViwsddgelvalvskdtvy 168
                 v+ ++ + +YD ++++ +  +d ++  +++V  s dg++va +s+d + 
  MMETSP0890-20130614|1365_1  27 VTFSGKLLIYDTATGSSLITVDAHNgdINYVAYSFDGSMVATASDDHTA 75 
                 55566799**************99667****************977654 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0001      0.28      39      87 ..      24      73 ..       9      84 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0001
   PF13360.1 39 lfvasakgrlvaldaatGkvlWsksl.egeiegaplvaggrvvvvtadns 87
                l v++ +g+l  +d+atG+ l ++++ +g+i+     ++g +v++++d+ 
  MMETSP0890-20130614|1365_1 24 LAVVTFSGKLLIYDTATGSSLITVDAhNGDINYVAYSFDGSMVATASDDH 73
                56677889999999999999999999999999998666666667766663 PP

>> PF01011.16  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0061        17       6      20 ..      27      41 ..      24      42 .. 0.87
   2 ?    4.0   0.0     0.013        36       1      14 [.      53      67 ..      53      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0061
                ESTTTEEEEEEST-- CS
  PF01011.16  6 gtfdGylyAlDakTG 20
                 tf+G l  +D +TG
  MMETSP0890-20130614|1365_1 27 VTFSGKLLIYDTATG 41
                49************9 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
                TEEEEE.STTTEEEE CS
  PF01011.16  1 gnvyvg.tfdGylyA 14
                +++yv  +fdG+++A
  MMETSP0890-20130614|1365_1 53 DINYVAySFDGSMVA 67
                579**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|1369_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:01.10
# Mc/sec: 122.00
//
Query:       MMETSP0890-20130614|1360_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-11   41.3   0.1    1.7e-10   40.4   0.1    1.5  1  PF00071.17 Ras family
    7.3e-09   36.0   0.0    1.7e-08   34.8   0.0    1.7  1  PF08477.8  Miro-like protein
      0.002   18.1   0.0      0.006   16.5   0.0    1.8  2  PF13401.1  AAA domain
     0.0038   16.3   0.1     0.0065   15.5   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.044   13.5   0.0    1.9  2  PF13173.1  AAA domain
      0.032   14.1   0.0      0.067   13.0   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
      0.064   12.0   0.2      0.095   11.4   0.1    1.2  1  PF00437.15 Type II/IV secretion system protein
      0.079   13.1   0.0        0.9    9.7   0.0    2.4  2  PF13238.1  AAA domain
       0.13   12.1   0.6       0.28   10.9   0.4    1.6  1  PF13521.1  AAA domain
       0.13   12.9   0.2       0.33   11.6   0.1    1.9  1  PF13207.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   1.2e-13   1.7e-10       2     155 ..     146     313 ..     144     320 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.2e-13
                 EEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHST......TTSSEEEE---TTGGG................G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHH CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvae......envpivLvGnKvDlee................kravsteegeelakelglkfletSAktnenveeafee 155
                 +v+ G s+vGKt l+  +  ++ k + ++T+gv+     i+++    k++iwDT G  +f +  s  ++ a+++l++y+ ++ +s+++++k+++  +++ +      +  +  L+++K   ++                ++++    g+ela  ++++f+      + +v++ f++
  MMETSP0890-20130614|1360_1 146 VVITGASGVGKTQLIETYAYGSTKLKPKETLGVER----IDIN----KMNIWDTSGDARFFQAVSGLIKIADALLVLYNPHNPQSLQSANKFFQAQSTTSNareyssSLKNAWLIATKRSPQQhlnnkiddtevkckeeEEEILLGPGKELALVYQAHFIYLDPTAKSQVDDFFNS 313
                 7899***************************8875....4443....799*****************************************9988777666667775334577888888777778778888878888888888888888888777766666666666667777765 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.2e-11   1.7e-08       2      98 ..     146     232 ..     145     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.2e-11
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellaw 98 
                 vv+ G +gvGK+ l++ +++++ +         ++tl+v  + +d+++  +++wd++g++++ +    l+k ada l++y   +++sl++++++++ 
  MMETSP0890-20130614|1360_1 146 VVITGASGVGKTQLIETYAYGSTK------LKPKETLGV--ERIDINK--MNIWDTSGDARFFQAVSGLIKIADALLVLYNPHNPQSLQSANKFFQA 232
                 89********************99......667777885..4455555..78************99999*********************9998753 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.4e-06     0.006       6      37 ..     145     180 ..     141     251 .. 0.74
   2 ?   -2.6   0.0       3.7   5.1e+03      36      63 ..     286     320 ..     259     337 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.4e-06
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaae....k 37 
                  +v+tG sGvGKT l++ +a    + +  ++    +
  MMETSP0890-20130614|1360_1 145 TVVITGASGVGKTQLIETYAYGSTKLKPKETlgveR 180
                 589*****************9865444433365553 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.7
   PF13401.1  36 e......karvvfveapastspkel.lqkllsalg 63 
                 +      +a++++ +++a++   ++  ++l   l+
  MMETSP0890-20130614|1360_1 286 KelalvyQAHFIYLDPTAKSQVDDFfNSELSTYLQ 320
                 04555557888888888888888885555555554 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-06    0.0065      27      56 ..     134     164 ..     106     205 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.7e-06
                 HHHH.HHCTTSBEEEE-------HHHHHHH- CS
  PF03193.11  27 eela.ellkdktsvlvGqSGvGKSsLinall 56 
                 ++l+ +++  kt+v++G SGvGK+ Li++ +
  MMETSP0890-20130614|1360_1 134 QTLQhDKVIAKTVVITGASGVGKTQLIETYA 164
                 44431456679****************9765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.2e-05     0.044       3      48 ..     144     191 ..     142     248 .. 0.67
   2 ?   -2.1   0.0       2.2   2.9e+03      74     113 ..     301     338 ..     249     344 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.2e-05
   PF13173.1   3 kilvitGpRrvGKttllkqlakell..keesilyinlddeelrkladp 48 
                 k +vitG+ +vGKt l++++a+     k++++l ++  d +  ++ d+
  MMETSP0890-20130614|1360_1 144 KTVVITGASGVGKTQLIETYAYGSTklKPKETLGVERIDINKMNIWDT 191
                 789****************99877777777777777666665554444 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.2
   PF13173.1  74 pewedalkslvddgrnldviltGsnskllskeiatslagr 113
                 p++++ ++ +++++  l  +l  s+s+l  +  +t l g 
  MMETSP0890-20130614|1360_1 301 PTAKSQVDDFFNSE--LSTYLQVSSSLLSPRSQNTVLYGN 338
                 44444555555533..566666666666655555655555 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.9e-05     0.067       2      86 ..     146     216 ..     145     277 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.9e-05
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTEEEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkekiilvDtPGiiegasedkeiegikkylekveradvlllvvd 86 
                 v+i G + vGK+ Li +     +  ++ +p +T+ +++  ++ +k++++Dt G            +++ +   ++ ad+ll++ +
  MMETSP0890-20130614|1360_1 146 VVITGASGVGKTQLIETYA---YGSTKLKPKETLGVER--IDINKMNIWDTSGD---------ARFFQAVSGLIKIADALLVLYN 216
                 89****************9...6788899999999933..3223358******1.........2244444444466666555554 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     7e-05     0.095      75     147 ..      88     162 ..      50     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-05
  PF00437.15  75 kgerfrvvllPvvee.eklviRkkssasl.sledlaakgalkkklaevlrqavqargnilvsGgTgsGKttllna 147
                 +  r   +l+Pv+    + ++Rk+ +a+   l+    k  ++ ++ ++l++     ++++++G+ g GKt l+++
  MMETSP0890-20130614|1360_1  88 RRRRRSSSLPPVISReRTEAVRKELEADRnALNSSKSKIGTSTTVLQTLQHDKVIAKTVVITGASGVGKTQLIET 162
                 55566778999999967799**665555415555566666778889999998788999************98765 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00066       0.9       1      16 [.     146     161 ..     146     230 .. 0.80
   2 ?    0.5   0.0      0.47   6.4e+02      68      93 ..     390     422 ..     361     444 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00066
   PF13238.1   1 IlitGtpGvGKtTlak 16 
                 ++itG++GvGKt l +
  MMETSP0890-20130614|1360_1 146 VVITGASGVGKTQLIE 161
                 79**********9976 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.47
   PF13238.1  68 s......el.aegenviidghlaeleledlkdl 93 
                         + a++++ +i+ h ++ ++++++ +
  MMETSP0890-20130614|1360_1 390 IssrfsnHItANKSISLINNHSSNSFFPRGILH 422
                 334444433055555599999999999998765 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00021      0.28       2      18 ..     146     162 ..     145     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00021
   PF13521.1   2 ivitGgpstGKTtllea 18 
                 +vitG++++GKT l+e 
  MMETSP0890-20130614|1360_1 146 VVITGASGVGKTQLIET 162
                 9*************985 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00024      0.33       2      32 ..     146     185 ..     145     300 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00024
                 E--B--TT---HHHHHHH.........HHHSTEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeL.........aerlglpvlsldd 32 
                 ++itG++G+GK+ l +           +e lg++ ++++ 
  MMETSP0890-20130614|1360_1 146 VVITGASGVGKTQLIETYaygstklkpKETLGVERIDINK 185
                 89**********9998886665555555557777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:01.17
# Mc/sec: 913.48
//
Query:       MMETSP0890-20130614|1368_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-15   54.9  28.4    2.1e-10   40.6  11.9    2.1  2  PF00892.15 EamA-like transporter family
  ------ inclusion threshold ------
      0.025   14.6   2.7      0.025   14.6   1.9    2.7  2  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.3   5.8e-08    0.0004      52     124 ..       4      77 ..       2      79 .. 0.94
   2 !   40.6  11.9   3.1e-14   2.1e-10       3     125 ..     104     229 ..     102     230 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.8e-08
  PF00892.15  52 dilallllgllgtvlgyllffyalkktsasnaslitslePvftills.vlllgekltlkqllgivlillGvlll 124
                 + ++l++l+ l+++  ++l+ +al+ +++   s+++ + Pv+t+ ++ +  +  kl+    +gi+++++G++++
  MMETSP0890-20130614|1368_1   4 KMASLFILAGLTSFGNVFLTVMALTMIPSDLYSMYQPIIPVITTAIAvSTGFETKLNRAICAGIAISVVGAVMV 77 
                 67899****************************************998899*********************98 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 3.1e-14
  PF00892.15   3 waiyfvlskkllesvspltitayrlliagillilllfllrep...ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  ++ +v++k l++  spltit + ++i+++  +l+l++ ++p   ++   ++ ++al++  +++t+ +y ++ +++++ s++ ++ +  l+Pvft+ll +l+l + ++l + l+ +++++G+l+++
  MMETSP0890-20130614|1368_1 104 ISSLIVITKPLTKIHSPLTITVWYYTIGSLWTLLALLCAQRPlasFFWSAPEPWAALVYAIVVATFYAYEAYSWLVHNASPTLVAAFCPLQPVFTVLLNFLILAKGIGLNTTLAGCVVIFGLLFTI 229
                 56778999999999***************755555555666689644455788*********************************************************************9987 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.9   3.6e-06     0.025      31     112 ..       3      85 ..       1      86 [. 0.83
   2 ?    2.5   9.2     0.021   1.5e+02      12     100 ..     136     224 ..     123     234 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.6e-06
   PF13536.1  31 rnpllwlllagllgfglfyalltlAakhapglvaaita.ltpllaallsl.llfkeklpkrellaslliliGvvlmqveeaesi 112
                 r+   +++lagl  f    +l + A+ ++p++    ++   p++++ +++ + f++kl+      +++ ++G v++ +++ae+ 
  MMETSP0890-20130614|1368_1   3 RKMASLFILAGLTSF-GNVFLTVMALTMIPSDLYSMYQpIIPVITTAIAVsTGFETKLNRAICAGIAISVVGAVMVEYSAAEGG 85 
                 455567899899888.89999999*******999998865777776666517789*************************9885 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.021
   PF13536.1  12 lllivllrkrlkellrelkrnpllwlllagllgfglfyalltlAakh..a.pglvaaitaltpllaallslllfkeklpkrellaslliliG 100
                 ll+++ +++ l ++  +   +p++ l+  +++ +  fya  +++  +  a p+lvaa   l p++++ll  l++ + + + + la ++++ G
  MMETSP0890-20130614|1368_1 136 LLALLCAQRPLASF-FWSAPEPWAALVY-AIVVA-TFYAYEAYSWLVhnAsPTLVAAFCPLQPVFTVLLNFLILAKGIGLNTTLAGCVVIFG 224
                 33334444445444.3344566777666.66665.7888888887774432568888888**************998888866665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.91
# Mc/sec: 829.51
//
Query:       MMETSP0890-20130614|1371_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-21   76.4   0.1      4e-19   68.8   0.0    2.1  1  PF02543.10 Carbamoyltransferase


Domain annotation for each model (and alignments):
>> PF02543.10  Carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   2.9e-23     4e-19     105     295 ..     172     397 ..     133     405 .. 0.73

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 2.9e-23
  PF02543.10 105 yrkkienleksllkka.dvfrksaesklkqreediaasiqvvlerlvlelleavleelkiern......lalaGGvalNvklNsklleeglFkdifvqPaanDaGlalGaallalvelde..............lkpless..vYlGpelsne.i.......elkeaawkakieseee....e.vlsevaelladgkvvgllqGrmElGPRALGnRSiladprkaem 295
                 y++ +++l++ + k    +++ + +s +++  ++ aa +q + er+++ +++++ e +k e+n      ++++G  alN  +Ns+l+++  F+ +fv+ a+ DaGl +Ga ++a++  +               +++++ +  +  G ++ +  +       +  ++  + +++s+++      +l+ +ae+la+gkv+++ +Gr+E GPR  G RSi+a+p +a+ 
  MMETSP0890-20130614|1371_1 172 YEALLKILSNHHSKVLwPLEDPTGKSDEEKYLRNSAAAAQDAWERTLMYFVKTAIEWIKHENNapapfgIVIVGTGALNFRANSALARHLNFE-LFVPYAPTDAGLGAGALCMAAQIAKDrpahlgfagpllfdSEQVQHLaaSRGGIAFDTSlTecemaerQSRNNFSTCNTTSKSKaslpFsLLATIAEALAHGKVIAVARGRAEHGPRSHGHRSIFANPYSASA 397
                 5555555555555544134455666777788888999999999999999998888877755544455559*******************9999.******************99854444799999**9999984444444456788888887532322222111111122222222211221357899*********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:00.71
# Mc/sec: 1724.70
//
Query:       MMETSP0890-20130614|1372_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-14   50.4   1.6    1.3e-13   49.9   1.1    1.2  1  PF02037.22 SAP domain
     0.0018   17.6   1.5     0.0058   16.0   1.1    1.9  1  PF12949.2  HeH/LEM domain
  ------ inclusion threshold ------
      0.036   13.6   0.0       0.11   12.1   0.0    1.8  2  PF02337.12 Retroviral GAG p10 protein
      0.087   12.7   0.9       0.13   12.1   0.6    1.3  1  PF09304.5  Cortexillin I, coiled coil


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   1.1   3.9e-17   1.3e-13       1      34 [.     107     140 ..     107     141 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 3.9e-17
                 HTT--HHHHHHHHHHTT------HHHHHHHHHHH CS
  PF02037.22   1 lskltVaeLKaeLkkrGLptsGkKaeLieRLkeh 34 
                 +  ltVa+LKa+Lk+rGL++sGkKaeLi RL+e 
  MMETSP0890-20130614|1372_1 107 YAALTVAKLKAILKERGLKVSGKKAELILRLLED 140
                 678****************************985 PP

>> PF12949.2  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.1   1.7e-06    0.0058       4      30 ..     110     134 ..     108     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.7e-06
   PF12949.2   4 LtVaqLRriLvehgIeyPsnAKKaeLv 30 
                 LtVa+L++iL e g    ++ KKaeL+
  MMETSP0890-20130614|1372_1 110 LTVAKLKAILKERGL--KVSGKKAELI 134
                 9*************6..6899*****8 PP

>> PF02337.12  Retroviral GAG p10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   4.7e+03      19      34 ..      54      69 ..      44      71 .. 0.68
   2 ?   12.1   0.0   3.2e-05      0.11       8      31 ..     109     132 ..     102     141 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
  PF02337.12 19 keRglkvkkkdlieFl 34
                + Rg ++++++l e l
  MMETSP0890-20130614|1372_1 54 SFRGKHISETQLAEML 69
                5577777777777655 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.2e-05
  PF02337.12   8 qlfvsaLkevLkeRglkvkkkdli 31 
                  l v++Lk +LkeRglkv+ k++ 
  MMETSP0890-20130614|1372_1 109 ALTVAKLKAILKERGLKVSGKKAE 132
                 6889***************99875 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   3.8e-05      0.13       7     104 ..      37     139 ..      35     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.8e-05
   PF09304.5   7 leasknelankLagLersledekvsqeeLakqkde......LksllasleaqkaerekrlrelqakidellknlekeklakleLesrlskaekDkaileLkLae 104
                 l+a+  ela ++ g e+s+ ++ +s  +La   +       + ++ + ++  +a+   + + l+ + d     l   kl    L+ r +k+   ka l L+L+e
  MMETSP0890-20130614|1372_1  37 LDANTPELAAQILGHEHSFRGKHISETQLAEMLNSesedygIADKTQHVDLVQANTLPKSASLEVEEDTSYAALTVAKLKA-ILKERGLKVSGKKAELILRLLE 139
                 89***************************54333223357899999999999999999999*****9999999*9999866.79******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 584.87
//
Query:       MMETSP0890-20130614|1364_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-12   45.2   0.0    7.7e-12   44.9   0.0    1.1  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   5.6e-16   7.7e-12     133     200 ..       2     104 ..       1     105 [. 0.98

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 5.6e-16
                 HHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23 133 qeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeHv 200
                 ++ + ++f++lp +++vd ki+++Hg+ls++++  d+i                                   g+++ fg+d ++ +l+k ++dlv+r+H+ v
  MMETSP0890-20130614|1364_1   2 WKTFTDCFNCLPVASIVDEKIFCCHGGLSPELQQIDQIkriirptdvpdtgllcdllwsdpdkdmigwgendrGVSFTFGEDIVAQFLRKMDLDLVCRAHQVV 104
                 78899***********************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|1379_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-38  132.4   0.0    2.4e-19   69.8   0.0    2.1  2  PF13361.1  UvrD-like helicase C-terminal domain
    6.1e-20   71.6   0.1    1.1e-19   70.7   0.1    1.4  1  PF00580.16 UvrD/REP helicase N-terminal domain
    3.3e-07   30.2   0.1      0.002   18.1   0.0    3.0  2  PF13538.1  Family description
  ------ inclusion threshold ------
      0.072   12.5   2.0         15    5.0   0.1    3.3  3  PF01443.13 Viral (Superfamily 1) RNA helicase
       0.14   11.8   1.7       0.28   10.8   1.2    1.4  1  PF08595.6  RXT2-like, N-terminal
        0.2   10.1   0.8       0.32    9.4   0.5    1.2  1  PF00945.13 Rhabdovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> PF13361.1  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   1.1e-22   2.4e-19       2     204 ..     155     387 ..     154     400 .. 0.88
   2 !   60.5   0.0     7e-20   1.6e-16     231     316 ..     496     618 ..     464     621 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 1.1e-22
                 E--EESSS-HHHHHHHHHHHTTCSSSSTT-EEECS--EE-SEEEEEECCHHHHHHHHHHHHHHHHHHHC--GGGEEEEES.....SGHHHHHHHHHHHHTT--EEET---BGGGSHHHHHHHHHHHHHH-TTSHHHHHHHCTSTT----HHHHHHHHHH................................HCHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHTTHHHHHHHH..HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
   PF13361.1   2 iLeeNYRStkeileaankllednkdrykkgllseskdgeekislleaenereeaefianeikkleekknisakdiavLvR.....snrqarnleeaLkkagipyklvgqfkfferkeikdllallklianpsdsislkrilkspprgigektleaiesl................................kklkaflelieklqkklkeasglselvekiveetglkelltkd..eegeek 204
                  L+eNYRS+k++l + ++l+ d+++r +     + k ++++i++l++ + +++a+ i++ + k+++++n ++ ++avL+R       r  + ++ +L ++gip+ + g+++ fe++ ++dl+a+l l   ps+  +++ri ++p+r ++++ +  i+++                                 +l ++l+ +++++ + + ++++++l+e i +++g+   l ++     ++k
  MMETSP0890-20130614|1379_1 155 ALTENYRSQKNVLVVGKALIPDSTKRLD----AT-KPAGTRITMLSCRDAQDQASCIVDDLMKHHRESNTPYGEMAVLFRcfkvaGSRLHHDVQLQLGQRGIPFSVAGSKSLFEQAIAQDLIAYLSLACGPSNP-AFERIFNTPKRRLSKSVWLLIQDAasqsggghvcfestaqslaspesgtiltnsqkTALRSLLSTMDEIR-RASYEMNVKALLEFIWHRAGFAAALANKakR--KRK 387
                 69******************77766544....34.44559****************************************444433677788999************************************988.*****************9999997899****************************999***********9.667789***************7777666342..222 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 7e-20
                 HHHHHHHCT-SS-STTS--TTGGGSEEEEECGGG----EEEEEETTTB----S.......................................-CCHH.CCHHHHHHHHHHHHHHHTTEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1 231 dfleelslsseeeeeevilrtkkdaVkimTvHkaKGLEfpvVflsgleegtfp.......................................sersi.ekeenleeerRlfYVAiTRAkkqLylta 316
                  f+ +++l+   +e+    + ++d+V ++T+H+aKGLE+ vV ++  + g fp                                       +++   ++++++eeerRl+ V +TRAk +L +  
  MMETSP0890-20130614|1379_1 496 AFVAHMALQTSGNETG---HHQEDRVVLSTIHRAKGLEWSVVAVPYFNDGLFPcayrpdedplggrhredcprrkffantntesipsctckeHYKDPhAERKHFEEERRLAHVCVTRAKTSLHFYK 618
                 7999999999999999...7899*******************************************************************8855555799*********************98765 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1     5e-23   1.1e-19     214     311 ..      44     141 ..       3     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 5e-23
                 HHHHHHHHHHHHHHTCEECCHHHHHHHHHHHHSHHHHHHHHHHSSEEEESSGGG--HHHHHHHHHHHTTTTTEEEE--GGG--GTT----TCHHHHHH CS
  PF00580.16 214 aeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQsIYgFRgAdielflkkk 311
                 a++l+ +   + +en + f+++l  + +ll+e+e++++ +  r  +i +DE+QD n  Q r+l l+a+  +  ++vGD++Q+IY+F+gA+i++f ++ 
  MMETSP0890-20130614|1379_1  44 AAILRGFNAILIQENVVTFEYMLAHMEKLLREHESVQKSFGARHAVIIVDEFQDNNALQSRVLVLMATMARGCMVVGDEDQAIYSFQGAQIGNFDRFA 141
                 5667777777889999******************************************************99**********************9875 PP

>> PF13538.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.7e-07     0.002      52      76 ..     514     538 ..     481     548 .. 0.80
   2 !    8.8   0.0   0.00069       1.6      82     103 ..     595     616 ..     586     617 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 8.7e-07
   PF13538.1  52 dvklayaltihkaqGsefdaVvvpd 76 
                 ++  ++++tih+a+G+e+ +V vp 
  MMETSP0890-20130614|1379_1 514 QEDRVVLSTIHRAKGLEWSVVAVPY 538
                 333899***************9985 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00069
   PF13538.1  82 frelrrrllYtavTRAkeklvl 103
                   e++rrl+++ vTRAk+ l++
  MMETSP0890-20130614|1379_1 595 HFEEERRLAHVCVTRAKTSLHF 616
                 45899************99975 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0071        16      48     100 ..      77     129 ..      51     208 .. 0.78
   2 ?   -0.9   0.0      0.39   8.9e+02     170     194 ..     509     536 ..     484     541 .. 0.73
   3 ?    5.0   0.1    0.0064        15     206     225 ..     597     617 ..     586     618 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0071
  PF01443.13  48 dsflmalvkskgkililDEylllhaGyill.laalssaklvilfGDplQipfhs 100
                 +s+++++ + +  ++i+DE++  +a +  + ++    a+ ++++GD+ Q  ++ 
  MMETSP0890-20130614|1379_1  77 ESVQKSFGA-RHAVIIVDEFQDNNALQSRVlVLMATMARGCMVVGDEDQAIYSF 129
                 444455544.4899*******9998888888899999999*********88775 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.39
  PF01443.13 170 lkealgvr...vttvhevqGltfdkVtl 194
                 ++ +++++    +t h + Gl++++V +
  MMETSP0890-20130614|1379_1 509 ETGHHQEDrvvLSTIHRAKGLEWSVVAV 536
                 3333444478899**********99976 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0064
  PF01443.13 206 s.srenllvAlTRhrkslvil 225
                 + +r    v+ TR+++sl+++
  MMETSP0890-20130614|1379_1 597 EeERRLAHVCVTRAKTSLHFY 617
                 33788899***********98 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2   0.00012      0.28      44      86 ..     380     418 ..     337     421 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
   PF08595.6  44 rkrkkkkkepridedenelddededdeeeededeeeaeenplk 86 
                 +k+k+k    r +++e+e+dd+++d e  +++++++++  p++
  MMETSP0890-20130614|1379_1 380 NKAKRK----RKHKEESENDDDSDDGEAPSEDNDDDEQTKPNN 418
                 344444....444444444433333333333333333445554 PP

>> PF00945.13  Rhabdovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00014      0.32     312     382 ..     350     422 ..     336     427 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00014
  PF00945.13 312 eeiaiqeltvaalllsyavsskadlekrfvekekketeekeeeeakeekeeaedG..vdsddeapksrdvvew 382
                 +ei   + +++   l + + ++a ++ +  +k k++ ++kee+e+ ++ ++ e+   +++dde++k++++  +
  MMETSP0890-20130614|1379_1 350 DEIRRASYEMNVKALLEFIWHRAGFAAALANKAKRKRKHKEESENDDDSDDGEAPseDNDDDEQTKPNNTLAP 422
                 5666667777777778888999999999999999999988888877777666654458899999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       749  (0.0547835); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.20u 0.43s 00:00:01.63 Elapsed: 00:00:00.80
# Mc/sec: 2024.92
//
Query:       MMETSP0890-20130614|1382_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-25   89.0   0.1    1.8e-25   88.2   0.0    1.4  1  PF08712.6  Scaffold protein Nfu/NifU N terminal
    2.8e-19   68.5   0.0    4.5e-19   67.8   0.0    1.3  1  PF01106.12 NifU-like domain
  ------ inclusion threshold ------
      0.025   13.9   0.0       0.57    9.4   0.0    2.0  2  PF05623.7  Protein of unknown function (DUF789)


Domain annotation for each model (and alignments):
>> PF08712.6  Scaffold protein Nfu/NifU N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   3.9e-29   1.8e-25       1      87 []       8     100 ..       8     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 88.2 bits;  conditional E-value: 3.9e-29
   PF08712.6   1 iqteeTpNpnaLKFlpgkevleeg...t..vefksaeea.easpLaqklfkiegVksVflgedFitvtkaeeveWeelkpevlelimehlesg 87 
                 iqte+TpNp+++KF+p+k vl+++   t  ++f+ ++++  +spLa+k++++e V+sVf+g+dFitv+kae+ +W+ lkp +++ +m+ +++g
  MMETSP0890-20130614|1382_1   8 IQTEKTPNPSSMKFIPSKPVLSDDvqgTsgFHFSLSDKEyLRSPLAKKILSVEDVTSVFIGKDFITVSKAEKESWNVLKPMIFKYLMDWFDEG 100
                 8********************998755456777755554156**********************************************99875 PP

>> PF01106.12  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   9.8e-23   4.5e-19       1      65 [.     126     193 ..     126     196 .. 0.94

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 9.8e-23
  PF01106.12   1 veevide.iRPalqrDGGdvelvdvdgk..kVkvrlqGaCsgCssstvTlkagierkLrerlgeslrV 65 
                 ++e+i+  iRPa+q+DGGd+   ++d++  +V+v+l G+C gC+ss++Tl++g+e++L+ +++e+  +
  MMETSP0890-20130614|1382_1 126 IKELIEVrIRPAVQEDGGDIFFRGFDEAtgIVQVELAGSCVGCPSSSITLRNGVENMLQYYVPEVTGI 193
                 7899**99*******************9899*******************************998765 PP

>> PF05623.7  Protein of unknown function (DUF789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.017        78     136     165 ..      29      58 ..       9      76 .. 0.84
   2 ?    9.4   0.0   0.00013      0.57      59     114 ..     172     228 ..     162     250 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.017
   PF05623.7 136 svqdkgellfeylesespysreplaekike 165
                 s + +g   f++  s++ y r pla+ki +
  MMETSP0890-20130614|1382_1  29 SDDVQGTSGFHFSLSDKEYLRSPLAKKILS 58 
                 4566888999*****************965 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00013
   PF05623.7  59 plrlngg.dsvvqYYvPyLSaiQlytkkkkslskrrkgeesdsellrdsssegssde 114
                  ++l +g +++ qYYvP   +i   t+++     + ++ + ++++ +++ss+ s  +
  MMETSP0890-20130614|1382_1 172 SITLRNGvENMLQYYVPEVTGIENVTSEDDDDIFKLSFPNAADNNAQTTSSSDSAAA 228
                 57888998**************98888777766666666665555555544444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 981.73
//
Query:       MMETSP0890-20130614|1384_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   16.6   0.1     0.0063   16.1   0.1    1.3  1  PF07687.9 Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.026   14.5   0.7      0.048   13.7   0.5    1.4  1  PF04706.7 Dickkopf N-terminal cysteine-rich region


Domain annotation for each model (and alignments):
>> PF07687.9  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.2e-07    0.0063      48     100 ..     104     162 ..      46     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.2e-07
   PF07687.9  48 a...eerslgrttlnvtgiegGt...aknvipdeaeakidiRllpgedpeevlkeieei 100
                       +++  tt+n t+i +G      n++++ea a id  ++  e   +++ ei++i
  MMETSP0890-20130614|1384_1 104 RlddSSNTINDTTFNYTIIFEGEveqDGNITAAEAIAAIDSDFNGTEFITDAKSEIRAI 162
                 0444578899**********************************************997 PP

>> PF04706.7  Dickkopf N-terminal cysteine-rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5     7e-06     0.048       1      20 [.     202     221 ..     202     226 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7e-06
   PF04706.7   1 eCisDedCeadeyClsssee 20 
                 +C+sD dC+++++C ++++ 
  MMETSP0890-20130614|1384_1 202 SCTSDLDCDYGQFCDFNRRR 221
                 5**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 1140.49
//
Query:       MMETSP0890-20130614|1383_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-16   58.3   0.1    1.1e-15   57.8   0.0    1.2  1  PF13353.1  4Fe-4S single cluster domain
    6.9e-13   48.9   0.0    8.4e-13   48.7   0.0    1.1  1  PF04055.16 Radical SAM superfamily
      1e-10   41.5   0.1    2.1e-10   40.5   0.1    1.4  1  PF13394.1  4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> PF13353.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   2.4e-19   1.1e-15       1      93 [.      45     154 ..      45     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 2.4e-19
   PF13353.1   1 lngegvrlslfvsGCnlkCkgCfnketwdfk.................kgkkftkelleeiiedlk..nekiegltllGGEPllpenaeallellkrvkeelpektiwlytG 93 
                 ++g+g+r+ +f++GC+++C+ C n +tw+                    +  +t+el+++i +  +  +++  g++ +GGEPll  +a+ +++l+ rvk++l   t + ++G
  MMETSP0890-20130614|1383_1  45 IDGPGLRYLVFLQGCQRRCAFCSNADTWKVVspheeheipvaadgtrlGSVMYTSELEKRISRCANylKTNEGGVSCSGGEPLL--QARFVQDLFTRVKNNLGLTTCLDTSG 154
                 58**************************766667778888888888888888999999998765554356667***********..*************9998666666666 PP

>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.9e-16   8.4e-13       2     154 ..      54     218 ..      53     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.9e-16
                 S-CCEESS--TT-CCCTC................HHHHHHHHHHHHHHHHHHHHHH..TCS-CEEEEE---SGGGTTTHHHHHHHHHHCHEECCEEEEEE-SSCH.HHHHHHHHHTT-SEEEEEEESSSHHHHHHCCTCTS-HHHHHHHHHHHHHHSSETEEEEEEEECTT CS
                 xxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04055.16   2 vvtrgCnlrCsfCanpet................sregrgrsrsveeileevkelk..eekgvkevtltGgepllypdfvellerlaklalpgirialetngtlpdeeileelaelgvdrvslglesgdeekvlklmrrghtfeevlealeklreagikrvvdfivglpge 154
                 v+++gC +rC fC+n +t                  ++ g  +   e+++++ +     + + ++v  +Ggepll+ +fv++l+   k++  g++++l t+g+ + + + ++ +  ++d+  l  +s+d++ ++  +  +  + + ++ ++++   +   + +++v +p  
  MMETSP0890-20130614|1383_1  54 VFLQGCQRRCAFCSNADTwkvvspheeheipvaaDGTRLGSVMYTSELEKRISRCAnyLKTNEGGVSCSGGEPLLQARFVQDLFTRVKNN-LGLTTCLDTSGMGD-PHMFDAVLA-ETDLTLLCPKSFDPD-LHYEI-SKLHINHLYDFVKAIDNQKAS-FMIRYVYIPDS 218
                 799*******************************55555555555555555555443145559**************************6.*************6.*********.55*************.77777.777888888888866666555.77888877764 PP

>> PF13394.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   4.6e-14   2.1e-10       1      88 [.      54     154 ..      53     178 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 4.6e-14
   PF13394.1   1 vFvrfagCnlkCkgCdtkstwdf................nggkpftaealaeiie..lkekkikpqgvvltGGEPllqlneeallelikalkeegpekeialetng 88 
                 vF+  +gC+ +C +C +++tw+                 + g  + +++l++ i+  +++ k+++ gv+++GGEPl  l+++++++l  ++k++   ++  l t+g
  MMETSP0890-20130614|1383_1  54 VFL--QGCQRRCAFCSNADTWKVvspheeheipvaadgtRLGSVMYTSELEKRISrcANYLKTNEGGVSCSGGEPL--LQARFVQDLFTRVKNNL-GLTTCLDTSG 154
                 566..**********************************999999999999999999888999999**********..66999999*99999986.6666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.60
# Mc/sec: 1026.44
//
Query:       MMETSP0890-20130614|1380_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:01.06
# Mc/sec: 755.08
//
Query:       MMETSP0890-20130614|1387_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 352.80
//
Query:       MMETSP0890-20130614|1388_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-15   54.6   4.5    8.4e-15   54.3   3.1    1.1  1  PF02297.12 Cytochrome oxidase c subunit VIb


Domain annotation for each model (and alignments):
>> PF02297.12  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   3.1   6.1e-19   8.4e-15       2      62 ..      29      84 ..      28      89 .. 0.93

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 6.1e-19
  PF02297.12  2 rfPnknerkaCweardeYfkCldkkgedaneCkaerkeyesnCpkswveyfkekrvleerk 62
                rf ++n+ ++Cw+++ e+  Cl+k++ d+ +Ck  r+   s+Cp++wve+++e+     r 
  MMETSP0890-20130614|1388_1 29 RFHTTNQANHCWNRYNEWVMCLKKTSGDEDQCKPMRQLSLSICPDAWVEKWDEE-----RD 84
                8999*************************************************9.....44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.82
# Mc/sec: 277.63
//
Query:       MMETSP0890-20130614|1389_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-19   66.4   5.8    2.3e-09   36.6   0.6    2.0  2  PF13431.1  Tetratricopeptide repeat
    3.6e-16   58.4   6.6    2.2e-10   39.9   1.0    2.0  2  PF13414.1  TPR repeat
    5.7e-10   38.2  15.2    2.8e-06   26.5   4.0    4.6  3  PF00515.23 Tetratricopeptide repeat
    2.7e-08   33.4   3.6    7.3e-07   28.9   0.3    2.0  1  PF13424.1  Tetratricopeptide repeat
    3.5e-07   30.5   2.4    4.1e-05   24.0   0.2    2.0  2  PF13432.1  Tetratricopeptide repeat
    5.1e-07   29.2   3.5    4.9e-05   22.9   0.4    2.3  2  PF13374.1  Tetratricopeptide repeat
      1e-06   27.9   9.3    2.9e-05   23.4   1.2    3.0  3  PF13181.1  Tetratricopeptide repeat
    2.9e-06   27.3   0.1    0.00025   21.2   0.1    2.3  2  PF13428.1  Tetratricopeptide repeat
    6.2e-06   25.6   8.4    0.00018   21.0   1.6    3.7  3  PF07719.12 Tetratricopeptide repeat
    0.00016   21.1   2.4     0.0034   16.9   0.1    3.1  4  PF13176.1  Tetratricopeptide repeat
     0.0018   17.4   0.3       0.44    9.5   0.0    1.9  2  PF10373.4  Est1 DNA/RNA binding domain
     0.0019   17.1   0.2     0.0021   17.0   0.1    1.1  1  PF02259.18 FAT domain
     0.0079   15.5   1.2     0.0081   15.5   0.8    1.0  1  PF12930.2  Family of unknown function (DUF3836)
     0.0095   16.2   3.4      0.022   15.0   0.4    2.5  3  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   15.1   4.1      0.026   15.0   0.5    2.5  2  PF08238.7  Sel1 repeat
      0.047   13.5   0.2       0.11   12.3   0.2    1.7  1  PF09094.6  Domain of unknown function (DUF1925)
      0.069   13.0   0.0         13    5.6   0.0    2.3  2  PF08234.7  Chromosome segregation protein Spc25
       0.11   12.1   1.3       0.13   11.9   0.9    1.2  1  PF08876.6  Domain of unknown function (DUF1836)
       0.19   11.7   0.9        5.7    7.0   0.0    2.8  3  PF11043.3  Protein of unknown function (DUF2856)
       0.45   10.2  10.5       0.29   10.8   0.3    3.7  3  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.6   3.3e-12   2.3e-09       1      34 []       1      35 [.       1      35 [. 0.94
   2 !   32.9   0.2   5.1e-11   3.5e-08       1      33 [.      36      69 ..      36      70 .] 0.92

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 3.3e-12
   PF13431.1  1 lyekaleldPnnadaynnLAellln.nGdleeAeq 34
                +y+ka+e dP++a aynnL++ll+n ++++++Aeq
  MMETSP0890-20130614|1389_1  1 MYRKAIEVDPKYAYAYNNLGLLLKNvRKKYDQAEQ 35
                7***********************84689****98 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 5.1e-11
   PF13431.1  1 lyekaleldPnnadaynnLAellln.nGdleeAe 33
                +y+ka+eldP+ a+ay+ L++ll+n ++++++Ae
  MMETSP0890-20130614|1389_1 36 MYRKAIELDPKLANAYTSLGYLLKNvRKKYDQAE 69
                7***********************8468999997 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   6.3e-08   4.3e-05      25      51 ..       1      27 [.       1      29 [. 0.91
   2 !   39.9   1.0   3.2e-13   2.2e-10      16      58 ..      27      69 ..      25      70 .] 0.96

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 6.3e-08
   PF13414.1 25 ayekAleldpnnaelyynlAlaylklg 51
                +y+kA+e dp++a +y+nl+l++ +  
  MMETSP0890-20130614|1389_1  1 MYRKAIEVDPKYAYAYNNLGLLLKNVR 27
                6*********************98865 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 3.2e-13
   PF13414.1 16 egdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAl 58
                +++yd+A+++y+kA+eldp+ a++y  l++++ +  k+y++A 
  MMETSP0890-20130614|1389_1 27 RKKYDQAEQMYRKAIELDPKLANAYTSLGYLLKNVRKKYDQAE 69
                69**************************************995 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0011      0.73      24      34 .]       2      12 ..       1      12 [. 0.92
   2 !   26.5   4.0   4.2e-09   2.8e-06       1      33 [.      13      46 ..      13      47 .. 0.93
   3 ?    3.0   0.7      0.11        75       1      13 [.      48      60 ..      48      70 .] 0.61

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0011
                HHHHHHHHTTH CS
  PF00515.23 24 yekALelnPnn 34
                y+kA+e++P++
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPKY 12
                9********97 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 4.2e-09
                HHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHTT CS
  PF00515.23  1 akalynlGnaylk.lgkydeAleyyekALelnPn 33
                a+a++nlG+++ +  +kyd+A++ y+kA+el+P+
  MMETSP0890-20130614|1389_1 13 AYAYNNLGLLLKNvRKKYDQAEQMYRKAIELDPK 46
                79*********985799****************7 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylk 13
                a+a+  lG+++ +
  MMETSP0890-20130614|1389_1 48 ANAYTSLGYLLKN 60
                5677777777765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.3   1.1e-09   7.3e-07      35      77 ..       2      45 ..       1      46 [. 0.90

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.1e-09
   PF13424.1 35 lrelgddhpdtaralnnlanlyla.lgdydeAleylekAleiae 77
                +r++ + +p +a a+nnl+ l+   +++yd+A+++++kA+e+++
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPKYAYAYNNLGLLLKNvRKKYDQAEQMYRKAIELDP 45
                56777889****************8889*************986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.012       8.3      20      41 ..       2      23 ..       1      27 [. 0.92
   2 !   24.0   0.2     6e-08   4.1e-05      10      51 ..      27      69 ..      26      70 .] 0.95

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.012
   PF13432.1 20 leaalalaPeaaeallllaeal 41
                +++a++ +P++a a+ +l+ +l
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPKYAYAYNNLGLLL 23
                899****************986 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 6e-08
   PF13432.1 10 aGdydeAlaaleaalalaPeaaeallllaeall.rlgrldeAa 51
                +++yd+A++ +++a++l+P+ a+a+  l+ +l   ++++d+A+
  MMETSP0890-20130614|1389_1 27 RKKYDQAEQMYRKAIELDPKLANAYTSLGYLLKnVRKKYDQAE 69
                589******************************999****996 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.4   7.2e-08   4.9e-05       2      30 ..      13      42 ..      12      43 .. 0.93
   2 !    7.1   0.1    0.0068       4.6       1      22 [.      47      69 ..      47      70 .] 0.93

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 7.2e-08
   PF13374.1  2 aaalnnLAlalrar.gryeeAlaleeeala 30
                a a+nnL+l+l +  ++y++A++++++a +
  MMETSP0890-20130614|1389_1 13 AYAYNNLGLLLKNVrKKYDQAEQMYRKAIE 42
                789***********************9976 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0068
   PF13374.1  1 taaalnnLAlalrar.gryeeAl 22
                +a a++ L+ +l +  ++y++A+
  MMETSP0890-20130614|1389_1 47 LANAYTSLGYLLKNVrKKYDQAE 69
                699*******************8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.17   1.1e+02      24      33 ..       2      11 ..       1      12 [. 0.87
   2 !   23.4   1.2   4.2e-08   2.9e-05       3      32 ..      15      45 ..      13      47 .. 0.95
   3 ?    6.1   0.2     0.014       9.6       1      21 [.      48      69 ..      48      70 .] 0.92

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.17
                HH---HHHH. CS
   PF13181.1 24 lekalelkpr 33
                ++ka+e +p+
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPK 11
                99*****996 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 4.2e-08
                -TTT---HHHH.TT-HHHHHHHHH---HHHH CS
   PF13181.1  3 ayynlGdiYrq.lGdydkAkeylekalelkp 32
                ay+nlG+++++  ++yd+A++ ++ka+el+p
  MMETSP0890-20130614|1389_1 15 AYNNLGLLLKNvRKKYDQAEQMYRKAIELDP 45
                8*****************************9 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.014
                ---TTT---HHHH.TT-HHHHH CS
   PF13181.1  1 akayynlGdiYrq.lGdydkAk 21
                a+ay+ lG+++++  ++yd+A+
  MMETSP0890-20130614|1389_1 48 ANAYTSLGYLLKNvRKKYDQAE 69
                689****************997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.039        27      23      42 ..       1      20 [.       1      22 [. 0.89
   2 !   21.2   0.1   3.7e-07   0.00025       5      44 .]      17      57 ..      15      57 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.039
   PF13428.1 23 llrralalaPddaealllLa 42
                ++r+a++ +P+ a a+ +L+
  MMETSP0890-20130614|1389_1  1 MYRKAIEVDPKYAYAYNNLG 20
                79***********9999887 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 3.7e-07
   PF13428.1  5 lalaralla.lGdpdeAiallrralalaPddaealllLarl 44
                  l+ +l + +  +d+A++++r+a++l+P+ a a++ L++l
  MMETSP0890-20130614|1389_1 17 NNLGLLLKNvRKKYDQAEQMYRKAIELDPKLANAYTSLGYL 57
                5666666653578*********************9999875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.045        31      24      34 .]       2      12 ..       1      12 [. 0.90
   2 !   21.0   1.6   2.6e-07   0.00018       1      33 [.      13      46 ..      13      47 .. 0.92
   3 ?    0.7   0.2      0.86   5.9e+02       6      13 ..      53      60 ..      48      70 .] 0.43

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.045
                HHHHHHH-TTS CS
  PF07719.12 24 fekAleldPnn 34
                ++kA+e dP++
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPKY 12
                9********85 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 2.6e-07
                HHHHHHHHHHHHHTT-H.HHHHHHHHHHHHH-TT CS
  PF07719.12  1 aealynlGlayyklgdy.eeAleafekAleldPn 33
                a+a++nlGl++ + ++  ++A++ ++kA+eldP+
  MMETSP0890-20130614|1389_1 13 AYAYNNLGLLLKNVRKKyDQAEQMYRKAIELDPK 46
                789999999999988888***************7 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.86
                HHHHHHHH CS
  PF07719.12  6 nlGlayyk 13
                 lG+++ +
  MMETSP0890-20130614|1389_1 53 SLGYLLKN 60
                44444433 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.4   9.4e+02      15      21 ..       2       8 ..       1      10 [. 0.63
   2 !   16.9   0.1   4.9e-06    0.0034       1      32 [.      15      45 ..      15      49 .. 0.88
   3 ?    2.6   0.0      0.19   1.3e+02       5      14 ..      47      56 ..      46      57 .. 0.90
   4 ?   -2.7   0.0       9.3   6.3e+03      14      18 ..      64      68 ..      60      69 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.4
   PF13176.1 15 yekAiel 21
                y+kAie+
  MMETSP0890-20130614|1389_1  2 YRKAIEV 8 
                6677764 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.9e-06
   PF13176.1  1 allnLarlysr.lgdyekAielyeraLaltkdp 32
                a++nL+ l  + + +y++A+++y++  a++ dp
  MMETSP0890-20130614|1389_1 15 AYNNLGLLLKNvRKKYDQAEQMYRK--AIELDP 45
                79***********************..777666 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.19
   PF13176.1  5 Larlysrlgd 14
                La++y++lg+
  MMETSP0890-20130614|1389_1 47 LANAYTSLGY 56
                9*******96 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 9.3
   PF13176.1 14 dyekA 18
                +y++A
  MMETSP0890-20130614|1389_1 64 KYDQA 68
                68888 PP

>> PF10373.4  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00065      0.44       5      34 ..       2      31 ..       1      33 [. 0.92
   2 !    6.5   0.0    0.0055       3.8       1      34 [.      33      66 ..      33      68 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00065
   PF10373.4  5 YllAasllPssGnpyNQlaviatyagdeld 34
                Y++A+++ P++  +yN l+++   +++++d
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPKYAYAYNNLGLLLKNVRKKYD 31
                9********************999888876 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0055
   PF10373.4  1 AlrYYllAasllPssGnpyNQlaviatyagdeld 34
                A++ Y++A++l P+  n+y  l+ +   +++++d
  MMETSP0890-20130614|1389_1 33 AEQMYRKAIELDPKLANAYTSLGYLLKNVRKKYD 66
                7889****************99999888887765 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1     3e-06    0.0021     249     312 ..      10      68 ..       2      70 .] 0.90

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3e-06
  PF02259.18 249 kllarcflklGewleklksnweqekkdeilkaystatefdpqwykawhswalanfevvqaeese 312
                 + +a +++ lG  l++      ++k d+++++y++a+e+dp++++a+ s+++  ++v +++ ++
  MMETSP0890-20130614|1389_1  10 PKYAYAYNNLGLLLKNV-----RKKYDQAEQMYRKAIELDPKLANAYTSLGYLLKNVRKKYDQA 68 
                 67889999999999999.....99******************************9999988765 PP

>> PF12930.2  Family of unknown function (DUF3836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8   1.2e-05    0.0081      61     116 ..       9      64 ..       2      70 .] 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.2e-05
   PF12930.2  61 hlkYeykYddegrvtekealkWneskeewekeykltytyedkeitveYakWnkkkk 116
                   kY y Y++ g + ++   k+++ +++++k++ l+ +  ++ +++ Y   n +kk
  MMETSP0890-20130614|1389_1   9 DPKYAYAYNNLGLLLKNVRKKYDQAEQMYRKAIELDPKLANAYTSLGYLLKNVRKK 64 
                 569***********************************999999999998887654 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       7.1   4.9e+03      23      29 ..       2       8 ..       1      12 [. 0.57
   2 !   15.0   0.4   3.2e-05     0.022       5      32 ..      18      46 ..      11      47 .. 0.87
   3 ?    1.6   0.1      0.62   4.2e+02       6      19 ..      54      68 ..      46      70 .] 0.57

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 7.1
                HHHHHHH CS
   PF13174.1 23 lerlike 29
                +++ i+ 
  MMETSP0890-20130614|1389_1  2 YRKAIEV 8 
                5566655 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 3.2e-05
                HHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
   PF13174.1  5 klalsyyk.lgdtdeAlealerlikeyPd 32
                +l+l++++  +++d+A +++++ i+  P+
  MMETSP0890-20130614|1389_1 18 NLGLLLKNvRKKYDQAEQMYRKAIELDPK 46
                6888888888***************9996 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.62
                HHHHHHH.HHHHHHH CS
   PF13174.1  6 lalsyyk.lgdtdeA 19
                l++++++  +++d+A
  MMETSP0890-20130614|1389_1 54 LGYLLKNvRKKYDQA 68
                444444444777777 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.5   3.8e-05     0.026       1      37 [.      13      43 ..      12      45 .. 0.80
   2 ?    0.3   0.0       1.6   1.1e+03       2      15 ..      49      60 ..      48      69 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.8e-05
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeq 37
                a A++nLG  ++++n    v k +++A++ y+kA e+
  MMETSP0890-20130614|1389_1 13 AYAYNNLG--LLLKN----VRKKYDQAEQMYRKAIEL 43
                68999***..74455....566699*********987 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.6
   PF08238.7  2 eAqynLGlyymyln 15
                 A+  LG  y+++n
  MMETSP0890-20130614|1389_1 49 NAYTSLG--YLLKN 60
                6777889..85555 PP

>> PF09094.6  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00016      0.11       3      30 ..      23      50 ..      21      69 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00016
                GGGHHHH-HHHHHHHHHHHHHHHHHTT- CS
   PF09094.6  3 wrnFlvkYeesnemhkrmlevskklksl 30
                 +n + kY+++++m+++ +e+  kl+++
  MMETSP0890-20130614|1389_1 23 LKNVRKKYDQAEQMYRKAIELDPKLANA 50
                699*******************999987 PP

>> PF08234.7  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.019        13      59      72 ..      17      30 ..      13      32 .. 0.89
   2 ?    5.4   0.0     0.022        15      56      72 ..      49      65 ..      35      67 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.019
                --HHHHHHHHHHHH CS
   PF08234.7 59 ndlrkFlkevRkaF 72
                n+l+ +lk+vRk++
  MMETSP0890-20130614|1389_1 17 NNLGLLLKNVRKKY 30
                89**********98 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.022
                HH---HHHHHHHHHHHH CS
   PF08234.7 56 nktndlrkFlkevRkaF 72
                n  ++l+ +lk+vRk++
  MMETSP0890-20130614|1389_1 49 NAYTSLGYLLKNVRKKY 65
                777899999******98 PP

>> PF08876.6  Domain of unknown function (DUF1836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   0.00019      0.13       8      57 ..      18      67 ..      10      70 .] 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00019
   PF08876.6  8 nldLyldqvlelvnqvleslkrnkvltktminNYvKrkliekpekKkYsk 57
                nl+L l  v +  +q  +   +  +l+++  n Y+  +++ k ++KkY++
  MMETSP0890-20130614|1389_1 18 NLGLLLKNVRKKYDQAEQMYRKAIELDPKLANAYTSLGYLLKNVRKKYDQ 67
                7899************9988888*************************87 PP

>> PF11043.3  Protein of unknown function (DUF2856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.24   1.6e+02      74      86 ..       2      14 ..       1      34 [. 0.57
   2 ?    7.0   0.0    0.0083       5.7      72      92 ..      35      55 ..      30      61 .. 0.79
   3 ?   -0.2   0.0       1.5     1e+03      21      32 ..      56      67 ..      51      68 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.24
   PF11043.3 74 ytkfieidprlrn 86
                y k ie+dp+   
  MMETSP0890-20130614|1389_1  2 YRKAIEVDPKYAY 14
                6666677776533 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0083
   PF11043.3 72 atytkfieidprlrnyrsryg 92
                 +y k ie+dp+l n  +  g
  MMETSP0890-20130614|1389_1 35 QMYRKAIELDPKLANAYTSLG 55
                5799*********99666555 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.5
   PF11043.3 21 evldklrknyda 32
                 +l+++rk+yd+
  MMETSP0890-20130614|1389_1 56 YLLKNVRKKYDQ 67
                567788888875 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.58   3.9e+02      28      31 ..      12      15 ..       2      18 .. 0.47
   2 ?   10.8   0.3   0.00042      0.29      15      35 ..      28      46 ..      27      53 .. 0.91
   3 ?    3.2   0.2       0.1        71      15      21 ..      63      69 ..      62      70 .] 0.90

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.58
                HHHH CS
   PF07720.7 28 llai 31
                ++++
  MMETSP0890-20130614|1389_1 12 YAYA 15
                3333 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00042
                T-HHHHHHH..HHHHHHH-TT CS
   PF07720.7 15 kkyqeArelfsYallaildke 35
                kky++A++   Y+ +  ld++
  MMETSP0890-20130614|1389_1 28 KKYDQAEQM--YRKAIELDPK 46
                9********..9999999887 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.1
                T-HHHHH CS
   PF07720.7 15 kkyqeAr 21
                kky++A+
  MMETSP0890-20130614|1389_1 63 KKYDQAE 69
                9*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 207.09
//
Query:       MMETSP0890-20130614|1391_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-11   42.1   0.1    2.3e-06   27.4   0.1    2.3  2  PF02270.10 Transcription initiation factor IIF, beta subunit


Domain annotation for each model (and alignments):
>> PF02270.10  Transcription initiation factor IIF, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.3e-06     0.072       3      40 ..      13      48 ..      11      61 .. 0.84
   2 !   27.4   0.1   1.7e-10   2.3e-06     139     274 ..     113     263 ..      58     264 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.3e-06
  PF02270.10  3 dldlenakqkvWLvkvPkyLsekWskleedsekelGkv 40
                dl + +++++ +L+k+P  L+ +Ws++++     l+++
  MMETSP0890-20130614|1391_1 13 DLGIGENDNDAYLMKLPSRLATAWSEAPDG--TLLAEI 48
                78889999******************9987..556655 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 1.7e-10
  PF02270.10 139 eGkVvheaevkpseneeyakllkkralkaskpkrkvqvldki.vtqsfkpvslhsenskv..fl.kkkkkeegkaaR..mdkkelldlLFkaFe...eyeywslkdLkertk...Q...PeayLkeiLeeiavlnkkgpykskweLKpEyr 274
                  G+    +  +p   + y++ +++r +++ ++ + vq +    v +s    ++++en++    l +++  + +k+++  +d++ l+  +F++     e +  + kdL + +    Q   Pe  Lk++L ei+  + k      ++LKpEy+
  MMETSP0890-20130614|1391_1 113 SGRPRVVVGLTPHTGKAYRRDCRSRMIESLQSSHIVQAIQPSeVDASREISRINAENMRNkrALeEEDDGNSNKKVKisIDRNLLKSHIFRLLAgkpEDDLLTYKDLFSAIAkdiQhapPEHLLKDVLTEICRKIHKPGRIVLYSLKPEYQ 263
                 5555555667888999************************9989999999999999998876668666677777766337************9833345688889996544312224449999*************99999*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.43s 00:00:01.03 Elapsed: 00:00:00.78
# Mc/sec: 823.36
//
Query:       MMETSP0890-20130614|1395_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.93
# Mc/sec: 649.34
//
Query:       MMETSP0890-20130614|1396_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-23   83.3   0.0    1.8e-23   83.1   0.0    1.1  1  PF04278.7 Tic22-like family


Domain annotation for each model (and alignments):
>> PF04278.7  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   1.3e-27   1.8e-23      61     272 .]     114     329 ..      54     329 .. 0.88

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 1.3e-27
   PF04278.7  61 salalsedevaekLagvPVFtianskgepllvsgkreggksvgllfisqedAeallkelkkqnpelkkgakvvpislgqvyklaqeeqk.........kseklaFrfvPdpkqvknAlellkkegqnvkkFrGVPvFqsrsltvkkdnkqyiPlFFskeDLerelerakrqqpelaksvkIeVisLedvlkkmeesd..dseldkiifiPpgkslefvqelkk 272
                 + ++ls   v e+La +PVF +an+ g+p+l++  +e g +  l+f++  dAe+ll e+ +  p+l ++a++  +s++ +++l q +            +  l++r +P++++v+ A + + ++ qn      VP ++s+ l  +k++  ++P+F+s +DL  ++ +a+++   + k+ k +V +L d++ + e+++    ++ k++f P+ ++++fv++++k
  MMETSP0890-20130614|1396_1 114 LRRKLSDFTVRERLAAIPVFYVANARGSPYLLNRVKE-GVQECLIFMDPLDAEQLLSEMCQASPQL-TDARIFCTSMDRAMNLLQRKPTptgnldargRELLLRYRIQPSEREVEIASKKIGNKAQN-----IVPCYVSEQLEYRKGGTTVVPVFLSSDDLIDAWREATSKVGVSSKQPKYKVHNLLDLVLASEDESigFGDFGKLAFYPNPRAVNFVRDVRK 329
                 55789999***************************98.888899********************66.789*************8887779999*99999999***************9887777776.....4****************************************************9999988887776667899**************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 1184.49
//
Query:       MMETSP0890-20130614|1397_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.4   0.8    2.4e-10   40.3   0.6    1.7  1  PF01966.17 HD domain
    0.00031   19.7   4.4     0.0006   18.8   3.1    1.4  1  PF13248.1  zinc-ribbon domain
     0.0042   16.7   4.3      0.008   15.8   3.0    1.4  1  PF12773.2  Double zinc ribbon
     0.0088   15.7   2.6      0.024   14.3   1.8    1.7  1  PF08772.6  Nin one binding (NOB1) Zn-ribbon like
  ------ inclusion threshold ------
       0.39   10.1   7.1        1.1    8.7   4.9    1.8  1  PF13240.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF01966.17  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.6   8.8e-14   2.4e-10       2     119 ..      77     229 ..      76     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 8.8e-14
                 HHHHHHHHHHHHHCCHHHHH........HHHHHHHHHHHHHTTHHHHS..S..HHH.....HHH...HHHHHHHHHHHHHHHHHHCCS...............HHHHHCCCCCCGS-TTTSHH.....HH...HHSTTTS-HHHHHHHHHHHH CS
  PF01966.17   2 leHsleVaklarrlaedlge........eedrellrlaaLlHDiGkgpfgdffekk.....qeefekfkaHekvgaeilrevekrlgld..............ledvaklirehhrswegkky.....ps...glaerelslearivklaDrl 119
                  eHs++Va+la++l ++l           +d  +++la+L+HD+G+gp ++ f+       +e+ +k  +He+ +  +lr+++ +++ +              +  ++ li   ++  + +k      +s   + ++ ++++  ++v+  D+l
  MMETSP0890-20130614|1397_1  77 KEHSIGVAHLAGKLIRKLRDaqpgldidADDISCIELAGLCHDLGHGPYSHMFDPFlnrafKEHDRKYASHEERSIALLRRICDDEKRNlkqyfrdedkfhlhINFACALITGLSDFVPLPKHeigrdESkrfMFDIVANKRSGLDVDKFDYL 229
                 59*****************9*******************************8887787786555889999***********999997767777776666666666666666666666666666555431144577777777777777777766 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   3.1   2.2e-07    0.0006       5      24 ..     379     398 ..     377     400 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.2e-07
   PF13248.1   5 CPnCGavlevdakFCpnCGa 24 
                 CP+C +++e+  kFC++CG+
  MMETSP0890-20130614|1397_1 379 CPYCKKPTEFLQKFCAHCGT 398
                 ******88***********8 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.0   2.9e-06     0.008       1      32 [.     379     407 ..     379     415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.9e-06
   PF12773.2   1 CpqCgaenpsgarfCpqCgaklkeataeevlC 32 
                 Cp C+++++   +fC +Cg++ k  ++  ++C
  MMETSP0890-20130614|1397_1 379 CPYCKKPTEFLQKFCAHCGTSTK--ER-DFVC 407
                 **********************9..33.4667 PP

>> PF08772.6  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.8   8.8e-06     0.024      11      56 ..     378     422 ..     374     432 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.8e-06
   PF08772.6  11 rChaCfkltkdmtkqFCpkCGnatLkrvavsvdedgeiklhlkkkf 56 
                 +C  C k t+   ++FC +CG +t +r  v ++++g++k+ + ++ 
  MMETSP0890-20130614|1397_1 378 ECPYCKKPTE-FLQKFCAHCGTSTKERDFVCIKDEGNKKVIIPNNL 422
                 5778888775.5568************************9998884 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.9    0.0004       1.1       1      21 [.     378     398 ..     378     400 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0004
   PF13240.1   1 kCPkCGaeledgakFCpyCGt 21 
                 +CP+C+++ e  +kFC +CGt
  MMETSP0890-20130614|1397_1 378 ECPYCKKPTEFLQKFCAHCGT 398
                 6*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       681  (0.0498098); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.67
# Mc/sec: 1874.17
//
Query:       MMETSP0890-20130614|1401_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-16   59.0   2.2    5.3e-07   29.1   0.0    4.6  5  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00042       5.7      11      31 ..       7      27 ..       4      34 .. 0.86
   2 ?    1.4   0.1     0.021   2.9e+02       8      30 ..      45      67 ..      38      74 .. 0.73
   3 !   29.1   0.0   3.9e-11   5.3e-07       2      39 .]     100     137 ..      99     137 .. 0.96
   4 ?   -3.0   0.0      0.52   7.2e+03      17      27 ..     245     255 ..     243     256 .. 0.71
   5 !   17.6   0.1   1.7e-07    0.0023      16      38 ..     304     326 .]     301     326 .] 0.94

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00042
                SSSEEEEEEESSSTEEEEEET CS
  PF00400.27 11 tspVtcvafspdgpllasgSr 31
                +s++t ++++ +g++++s++ 
  MMETSP0890-20130614|1401_1  7 SSGITGISYHREGKMVVSACG 27
                689****************96 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.021
                ESSSSSEEEEEEESSSTEEEEEE CS
  PF00400.27  8 rgHtspVtcvafspdgpllasgS 30
                +  + +V+c+++ +d + ++ gS
  MMETSP0890-20130614|1401_1 45 KCYKYGVSCISYTHDVHSILHGS 67
                555689******99966555555 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 3.9e-11
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + ++++rgH++pV+++a +p    + s+  D +i +Wd
  MMETSP0890-20130614|1401_1 100 KYLRVFRGHEKPVSSLAMNPKNDTFYSAATDDKIAIWD 137
                 6789*********************************9 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 0.52
                 EEEESSSTEEE CS
  PF00400.27  17 vafspdgplla 27 
                 +  spdg++l+
  MMETSP0890-20130614|1401_1 245 IESSPDGNCLL 255
                 56689988875 PP

  == domain 5    score: 17.6 bits;  conditional E-value: 1.7e-07
                 EEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  16 cvafspdgpllasgSrDgtirlW 38 
                 + afsp g +++ g++Dg +r+W
  MMETSP0890-20130614|1401_1 304 DAAFSPGGDYVVGGGDDGLLRIW 326
                 679******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.77
# Mc/sec: 1014.56
//
Query:       MMETSP0890-20130614|1394_1  [L=970]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   17.2   0.0       0.94    9.1   0.0    3.0  3  PF06071.8 Protein of unknown function (DUF933)
  ------ inclusion threshold ------
      0.021   14.0   0.0      0.057   12.6   0.0    1.7  1  PF08450.7 SMP-30/Gluconolaconase/LRE-like region


Domain annotation for each model (and alignments):
>> PF06071.8  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00014      0.94      18      57 ..     751     790 ..     741     798 .. 0.87
   2 ?   -1.7   0.0      0.34   2.3e+03      19      53 ..     828     862 ..     823     871 .. 0.86
   3 !    4.1   0.0    0.0051        35      18      53 ..     903     938 ..     897     947 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00014
                 E---BHHHH-----HHHHHT-----EE-HHHHHHHTSHHH CS
   PF06071.8  18 kkgtkapqaagviHsDfekgFiraevisyedliklkseak 57 
                  +g +a  +a+   sD++  F++ ev+ ++d+ +l+ ++ 
  MMETSP0890-20130614|1394_1 751 YNGRRASYCAENDCSDMRGEFVKGEVVLHSDFAALEVWRG 790
                 67999***************************99886655 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.34
                 ---BHHHH-----HHHHHT-----EE-HHHHHHHT CS
   PF06071.8  19 kgtkapqaagviHsDfekgFiraevisyedliklk 53 
                 +g +a  +a+   s ++  ++  e++ ++d+ +l+
  MMETSP0890-20130614|1394_1 828 NGRRASYCAENDCSALRGDYVPGEIVLVSDFAALE 862
                 788999999999999999************99876 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0051
                 E---BHHHH-----HHHHHT-----EE-HHHHHHHT CS
   PF06071.8  18 kkgtkapqaagviHsDfekgFiraevisyedliklk 53 
                  +g +a  +a+   s+++  F++ ev+ ++d+ +l+
  MMETSP0890-20130614|1394_1 903 YNGRRASYCAENDCSEMRGEFVEGEVVLVSDFAALE 938
                 5799999*************************9876 PP

>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.3e-06     0.057     127     184 ..     589     649 ..     567     667 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.3e-06
   PF08450.7 127 ervlddltisNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvfidlkkge...g 184
                 +++ +d+  + +i wsp g  ++  D  ++++ + d+d+eg++ ++ r+++++ + +    
  MMETSP0890-20130614|1394_1 589 TLIDEDFGDPDSIYWSPRGFLMIAEDGSQGRLLRLDLDEEGKTTGSMRTLTRVADAGlvtD 649
                 56778899999***************************************99988775550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.28u 0.40s 00:00:01.68 Elapsed: 00:00:00.92
# Mc/sec: 2526.59
//
Query:       MMETSP0890-20130614|1402_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-12   46.2   0.3    1.9e-11   44.4   0.2    2.0  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
  ------ inclusion threshold ------
      0.023   14.3   0.0        6.3    6.5   0.0    2.4  2  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.2   2.8e-15   1.9e-11      39     120 .]      62     145 ..       7     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 2.8e-15
                 HHHHHHHCTHHCCSSHHHHHHST.T-SEEEE-S-GGGHHHHHHHHHHTT-.EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE- CS
  PF01408.17  39 aeavaesfgveaysdleelledp.kidavivatpngthadlalaaleagk.hvllEKPlattveeakelvelaekkgkivsvgy 120
                 +e vae  gv+  +d+e+l++++  i++v++a +++   +l ++a++ag  h+llEKP a tv+e++++++ a+++++ v++g+
  MMETSP0890-20130614|1402_1  62 QEVVAEMPGVNFHADVENLFQKEgVIKLVLIAGRTSDNPKLFRQAIKAGAsHILLEKPGAPTVSELEAMAHDAKEANVPVFMGF 145
                 45669999999************99****************************************************9999986 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0019        13      38      79 ..     188     227 ..     168     254 .. 0.83
   2 ?    6.5   0.0   0.00093       6.3      23      63 ..     316     353 ..     309     358 .] 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0019
                 HHCHHCCTTCHHHHHHHHHHHT-EEEEEEEEE-SCEECTCCC CS
  PF02894.12  38 kggGvlgdlgiHdiDllqwLfGeppsvvaalgrqrqvaeate 79 
                 ++ G+l +++iH++ l+   fG +  + ++++   +++e++e
  MMETSP0890-20130614|1402_1 188 NSEGLLKNMAIHELALAAQFFGMRADNITHVS--LDNPENCE 227
                 5679999******************9999998..88887766 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00093
                 EECCSCHHCTTSSCCHHCHHCCTTCHHHHHHHHHHHT-EEE CS
  PF02894.12  23 ragrpskkrwkrrakkggGvlgdlgiHdiDllqwLfGepps 63 
                  +++ s ++ k    ++  +++d++iH + l+ +L++  +s
  MMETSP0890-20130614|1402_1 316 QRCAASAVNNKY---PDAVATIDIAIHALKLAEYLTPILQS 353
                 566677777775...8999****************976555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1243.33
//
Query:       MMETSP0890-20130614|1407_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-16   57.7   0.1    8.5e-16   57.0   0.0    1.3  1  PF04716.9 ETC complex I subunit conserved region


Domain annotation for each model (and alignments):
>> PF04716.9  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   6.2e-20   8.5e-16       2      56 ..      39      93 ..      38      94 .. 0.97

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 6.2e-20
   PF04716.9  2 nPrsaLlalYtktLkkLkkiPedsvYRqstEaltkeRLkiveeeedvekiekkig 56
                n r+ L+  ++++L++Lk iPe+ +YRq tE+++k+RL+   + ed e ie++ig
  MMETSP0890-20130614|1407_1 39 NGRANLIVQCENILEALKGIPETNGYRQDTEKIVKYRLETAMKFEDEEMIEEEIG 93
                789***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.53
# Mc/sec: 682.74
//
Query:       MMETSP0890-20130614|1418_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-16   57.5   0.2    9.6e-16   57.0   0.1    1.3  1  PF00355.21 Rieske [2Fe-2S] domain
    9.1e-10   38.2   1.2    9.1e-10   38.2   0.8    2.8  3  PF08802.5  Cytochrome B6-F complex Fe-S subunit
  ------ inclusion threshold ------
       0.19   11.4   2.2       0.41   10.3   1.5    1.5  1  PF02704.9  Gibberellin regulated protein


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   2.1e-19   9.6e-16      31      90 ..     130     182 ..     105     192 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 2.1e-19
                 CTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS-SCE CS
  PF00355.21  31 dkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatkvlkl 90 
                 +k  + + +n++CtH+gc+++++k   +  +++ CpcHg++yd + gkvv+gpa+   +l
  MMETSP0890-20130614|1418_1 130 GKVIRDYGINAVCTHLGCVVPWNK--AA--NKYMCPCHGSQYDQT-GKVVRGPAPL--SL 182
                 444445789**************3..33..459**********55.********94..33 PP

>> PF08802.5  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.2     9e+02      21      34 ..       3      16 ..       2      19 .. 0.84
   2 !   38.2   0.8     2e-13   9.1e-10       2      37 ..      42      78 ..      41      80 .. 0.89
   3 ?   -1.1   0.5       0.4   1.8e+03      17      26 ..      83      92 ..      82      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.2
   PF08802.5 21 alpalgalyPvvkf 34
                +++++ +l +v++f
  MMETSP0890-20130614|1418_1  3 SVVIALCLACVGAF 16
                68889999999987 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 2e-13
   PF08802.5  2 eVPDmsrRqlLNll.llGavalpalgalyPvvkffvP 37
                +V+Dm+rR+++Nl+ l+G+v   ++g++ P++ ff+P
  MMETSP0890-20130614|1418_1 42 FVADMERRNIMNLIlLFGGVLPAVGGLGIPYILFFIP 78
                69**********9626799999999999********9 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.4
   PF08802.5 17 lGavalpalg 26
                +G++++pal+
  MMETSP0890-20130614|1418_1 83 GGGAGVPALT 92
                6899999986 PP

>> PF02704.9  Gibberellin regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5     9e-05      0.41      26      56 ..     141     172 ..     137     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9e-05
   PF02704.9  26 CCakckCV.ppGtygnkeeCpCYrdlktkegk 56 
                  C++  CV p   ++nk +CpC+ +   ++gk
  MMETSP0890-20130614|1418_1 141 VCTHLGCVvPWNKAANKYMCPCHGSQYDQTGK 172
                 688889962667899********999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 895.48
//
Query:       MMETSP0890-20130614|1420_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-14   52.7   0.1      2e-13   50.6   0.0    1.9  1  PF12697.2  Alpha/beta hydrolase family
    3.7e-06   26.6   0.0    6.8e-05   22.5   0.0    2.3  1  PF12695.2  Alpha/beta hydrolase family
    0.00011   21.7   0.0     0.0002   20.8   0.0    1.5  1  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.95    9.9   9.5       0.28   11.6   0.3    2.4  2  PF03964.10 Chorion family 2


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0     6e-17     2e-13       8     218 ..     177     502 ..     170     505 .. 0.68

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 6e-17
                 --------HHHHHHTT..TSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.....EEEEEEE------STT...............................................................................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG..........................................------HHHHTT--S-EEEEE-----HHH....HHHHHHHHHHSTT...EEEEE---SSSS-. CS
   PF12697.2   8 ggsaeswrplaeaLaa..gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpd....lvrglvlidppgplpas...............................................................................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa..........................................lldadlrealarldvPvlviageaDrvvp....peearrlaealpg...arvvvlpgagHllf 218
                 ggs  +   l++  a+  g rv++pD+pG+GrS+ ++   ++t+ d+ +d++ l d l++++  ++ +S G+a+a+  +  +p+    lv+++ li+p++pl+a+                                                                                               +                   + +l++ +f+++  ++  ++ +r+                                                      l  +d+  +++ +  P+ v +g++D +++     + + r++ +lp+   +++  + g+ H+++
  MMETSP0890-20130614|1420_1 177 GGSR-YLVLLLDDVARqfGLRVISPDRPGFGRSTILD---NRTFSDFGQDVESLCDFLNIQKMGIWSYSVGCAYAAVCCL-QPRlkqrLVAKITLISPWVPLTAPgvpmhfsiarffphsvaeflkpqdvsdkraelkrrgqlssgqstddtiknnqralssdnlamsapsaglyrfgvaseptlsqrsssansykkqqsV-------------------AMYLCGTSFFDQDEDKATHSPFRD-----------DsneltdaemraletlprgprlllasiiesqiqggrgfseefrLCCSDFDFDYQDMNWPCRVYHGTDDNLLSthsvRWLVSRIRSKLPDdrhVELFQVLGGTHNGM 502
                 4444.344455555544799***************86...799*********************************7775.5766788************99999******999999888888888888888888888888888888888888888888888888777777777776666554444333333332222220...................233333333333322222222222...........0222222222223444444466666666667777777777777577777779999999**************4444444455555555433356666668888765 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-08   6.8e-05       2     142 .]     170     500 ..     169     500 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2e-08
   PF12695.2   2 vvlvhGaggdssayeplaealakr.gfavvavdlpghgas..egaa.......aakrvlaadlldleriilvGhSlGGgvalelag....................................................rddrvkglvllapfpdgedlakltl....................................................................................................................................................pvllihGtrDgvvppeeaeklakalp......gdaelvviegasHf 142
                 v+++ G gg++  +  l +  a++ g++v+++d pg g+s   + +       +++++   d l++++++++  S G ++a+ ++                                                     r                       +                                                                                                                                                    p+ ++hGt+D++++ ++++ l+++++       ++el+ + g++H+
  MMETSP0890-20130614|1420_1 170 VLCFFGIGGSR-YLVLLLDDVARQfGLRVISPDRPGFGRStiLDNRtfsdfgqDVESLC--DFLNIQKMGIWSYSVGCAYAAVCCLqprlkqrlvakitlispwvpltapgvpmhfsiarffphsvaeflkpqdvsdkR-----------------------AelkrrgqlssgqstddtiknnqralssdnlamsapsaglyrfgvaseptlsqrsssansykkqqsvamylcgtsffdqdedkathspfrddsneltdaemraletlprgprlllasiiesqiqggrgfseefrlccsdfdfdyqdmnwPCRVYHGTDDNLLSTHSVRWLVSRIRsklpddRHVELFQVLGGTHN 500
                 55666666554.4567788888888**************97755553455555555555..3559*****************999978775555555555555555555555555555555555555555555555540.......................14455555555555555555555555555555555666666666666666666666666666666666666666666666666666677888888888888999999999999999999999999999999999999999999999999****************999955555544436666677888888885 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.8e-08    0.0002       2      80 ..     196     298 ..     195     398 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.8e-08
                 EEEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGG...GEEEEEEESB--..........................H CS
  PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypd...rvkamvllgtva..........................v 80 
                 +vi +D +G+g+S+      l++ t+ d+  d+e + d l+++k  ++ +S G++ a+  +++       v++++l++++                           +
  MMETSP0890-20130614|1420_1 196 RVISPDRPGFGRST-----ILDNRTFSDFGQDVESLCDFLNIQKMGIWSYSVGCAYAAVCCLQPRLkqrLVAKITLISPWVpltapgvpmhfsiarffphsvaeflkP 298
                 79************.....8***********************************99988887655668**********85555555444444444444444444441 PP

>> PF03964.10  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   2.1      0.11   3.6e+02      49      70 ..     119     140 ..     116     161 .. 0.76
   2 ?   11.6   0.3   8.2e-05      0.28      16      91 ..     294     371 ..     288     379 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.11
  PF03964.10  49 sAaaaAasalaalnaGsykvwk 70 
                 +AaaaAa a+aa ++++  v++
  MMETSP0890-20130614|1420_1 119 EAAAAAAEAAAAEAERNAPVEV 140
                 6899999999998888755444 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 8.2e-05
  PF03964.10  16 paltvkaivsYgr....argnsgygrsgslvssssdssAaaaAasalaalnaGsykvwkvpsyevdgaygpssgyaaqqe 91 
                  +l+++ + s +r    +rg+ + g+s   + + ++++A++   +a +a++aG y+  +   + + +   + ++y++qq+
  MMETSP0890-20130614|1420_1 294 EFLKPQDV-SDKRaelkRRGQLSSGQS-TDDTIKNNQRALSSDNLAMSAPSAGLYRFGVASEPTLSQRSSSANSYKKQQS 371
                 55555554.333333338898888888.889999*********************9988888888777666677866664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       941  (0.0688268); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.48s 00:00:01.41 Elapsed: 00:00:00.72
# Mc/sec: 1930.40
//
Query:       MMETSP0890-20130614|1424_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       627  (0.0458602); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.46s 00:00:00.95 Elapsed: 00:00:00.70
# Mc/sec: 825.03
//
Query:       MMETSP0890-20130614|1423_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 732.80
//
Query:       MMETSP0890-20130614|1428_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-36  124.2   0.1    2.6e-36  123.9   0.0    1.1  1  PF00179.21 Ubiquitin-conjugating enzyme
     0.0035   17.0   0.0     0.0041   16.8   0.0    1.3  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.0   3.7e-40   2.6e-36       1     138 [.      61     194 ..      61     196 .. 0.90

  Alignments for each domain:
  == domain 1    score: 123.9 bits;  conditional E-value: 3.7e-40
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                 r+qk+++el+    ++ik    +  +l++++v++++ + + ++g+++++++++p+ YP++PPkv++ t+ifHPn++ +G++cl+iL+++ W+p+l+++ v+++++ l+ epnp++plnkeaa+l++++ ++++++v++
  MMETSP0890-20130614|1428_1  61 RIQKDIAELDGGDVAIIKFPNPN--DLTKFNVIVTP-DTGFWKGATYHFTFTIPPMYPHEPPKVHCDTRIFHPNINLEGNVCLNILRQD-WKPVLDINAVIYGLIYLFYEPNPDDPLNKEAAQLYRDDIKMFERHVQR 194
                 67777777766666666555444..7****998887.**************************************************66.*******************************************99975 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     6e-07    0.0041      32      73 ..      88     126 ..      15     165 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  32 ltiklkllltesessklpsleleirlpedYPeeaPiitlsst 73 
                 +++ +   + ++   k  ++++++++p+ YP+e+P+++  + 
  MMETSP0890-20130614|1428_1  88 FNVIV---TPDTGFWKGATYHFTFTIPPMYPHEPPKVHCDTR 126
                 33333...44444455569*****************986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.79
# Mc/sec: 600.61
//
Query:       MMETSP0890-20130614|1426_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-13   48.9   4.1    1.7e-08   34.3   3.1    2.1  2  PF13499.1  EF-hand domain pair
    3.6e-10   38.7   2.7     0.0019   17.8   0.3    4.6  5  PF13405.1  EF-hand domain
    4.1e-10   38.9   8.6    1.6e-05   24.2   1.2    3.0  3  PF13833.1  EF-hand domain pair
      8e-09   34.0   6.5     0.0052   15.9   0.3    3.8  4  PF00036.27 EF hand
  ------ inclusion threshold ------
      0.053   13.1   2.2       0.11   12.1   0.6    2.0  2  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.7e-05       0.1       2      64 ..      17      74 ..      16      76 .. 0.94
   2 !   34.3   3.1   6.4e-12   1.7e-08       1      66 []      88     149 ..      88     149 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.7e-05
   PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64
                lkea++l+  d   +l+  e  ++ ++lg   +++e ++     fk++    +G++++++fl+
  MMETSP0890-20130614|1426_1 17 LKEAWNLIAGDEKTQLTSKEVYKVYRALGMAPTEYEHKTY----FKQMEPT-NGKVDRADFLS 74
                8999999999*********************99******9....******9.*********97 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 6.4e-12
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 kl eaF+ +D d+  y ++++L r++++lg++l+ +e+r++    + e+D  gd ++++eEf +++
  MMETSP0890-20130614|1426_1  88 KLTEAFEIFDLDKKQYFNQDDLARVMRNLGEDLTKDEIRDM----ILEVDCQGDLLINREEFTEMM 149
                 6899**************************55555555555....******************997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00022       0.6       1      31 []      16      45 ..      16      45 .. 0.95
   2 ?    3.4   0.0     0.029        78      14      27 ..      64      77 ..      53      84 .. 0.79
   3 !   17.8   0.3   6.8e-07    0.0019       2      31 .]      89     117 ..      88     117 .. 0.93
   4 ?   -0.3   0.0      0.43   1.2e+03      17      26 ..     120     129 ..     119     133 .. 0.84
   5 ?    3.6   0.1     0.024        66       7      26 ..     130     149 ..     124     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00022
                HHH---GCC-------B---HHHHHHH.H-- CS
   PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrkslg 31
                el+ea++l+  d + +++ +E+ +++r +lg
  MMETSP0890-20130614|1426_1 16 ELKEAWNLIAGDEKTQLTSKEVYKVYR-ALG 45
                799***********************9.777 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.029
                ---B---HHHHHHH CS
   PF13405.1 14 dGkidaeELrdaLr 27
                +Gk+d++++++ + 
  MMETSP0890-20130614|1426_1 64 NGKVDRADFLSTME 77
                9********98876 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 6.8e-07
                 HH---GCC-------B---HHHHHHH.H-- CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrkslg 31 
                 l eaF++fD d++ + ++++L +++r +lg
  MMETSP0890-20130614|1426_1  89 LTEAFEIFDLDKKQYFNQDDLARVMR-NLG 117
                 789***********************.776 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.43
                 B---HHHHHH CS
   PF13405.1  17 idaeELrdaL 26 
                 ++++E+rd++
  MMETSP0890-20130614|1426_1 120 LTKDEIRDMI 129
                 799***9986 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.024
                 GCC-------B---HHHHHH CS
   PF13405.1   7 klfDkdgdGkidaeELrdaL 26 
                    D  gd  i++eE+  ++
  MMETSP0890-20130614|1426_1 130 LEVDCQGDLLINREEFTEMM 149
                 5678889*********9987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.085   2.3e+02       4      29 ..      31      55 ..      28      61 .. 0.74
   2 !   23.7   0.8   8.5e-09   2.3e-05       2      53 ..      64     115 ..      63     116 .. 0.92
   3 !   24.2   1.2     6e-09   1.6e-05       2      52 ..     101     150 ..     100     151 .] 0.96

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.085
   PF13833.1  4 lItreeLkralallglkglseeevdi 29
                ++t +e ++ +++lg+  ++e+e  +
  MMETSP0890-20130614|1426_1 31 QLTSKEVYKVYRALGMA-PTEYEHKT 55
                56777777878889***.***99555 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 8.5e-09
   PF13833.1   2 kGlItreeLkral.allglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                 +G+++r+++ + + +  ++++l ++++++ f  fD+d++ + ++++  ++++ 
  MMETSP0890-20130614|1426_1  64 NGKVDRADFLSTMeDI-HVNSLANDKLTEAFEIFDLDKKQYFNQDDLARVMRN 115
                 8************665.8888**************************999975 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 6e-09
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                 k++  +++L r +++lg + l+++e+++++ e+D  gd  i+ eEF ++++
  MMETSP0890-20130614|1426_1 101 KQYFNQDDLARVMRNLGED-LTKDEIRDMILEVDCQGDLLINREEFTEMMA 150
                 89999**************.*****************************96 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.38     1e+03       1      21 [.      16      36 ..      16      44 .. 0.63
   2 ?    3.7   0.0     0.015        41      14      27 ..      64      77 ..      63      79 .. 0.89
   3 !   15.9   0.3   1.9e-06    0.0052       2      29 .]      89     116 ..      88     116 .. 0.93
   4 !   15.4   0.3   2.7e-06    0.0073       1      27 [.     124     150 ..     124     151 .] 0.96

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.38
                HHHHHHHHHCTTTSSEBEHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeE 21
                elkea++++  D   +++ +E
  MMETSP0890-20130614|1426_1 16 ELKEAWNLIAGDEKTQLTSKE 36
                688888877555555555555 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.015
                SSEBEHHHHHHHHH CS
  PF00036.27 14 dGkIsfeEfkealk 27
                +Gk++  +f++ ++
  MMETSP0890-20130614|1426_1 64 NGKVDRADFLSTME 77
                8*********9987 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkkl 29 
                 l eaF++fD D+  + + +++ +++++l
  MMETSP0890-20130614|1426_1  89 LTEAFEIFDLDKKQYFNQDDLARVMRNL 116
                 679**********************975 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                 e+++++ e+D  gd  I+ eEf e+++
  MMETSP0890-20130614|1426_1 124 EIRDMILEVDCQGDLLINREEFTEMMA 150
                 79***********************96 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11     3e+02       8      37 ..      16      43 ..       9      77 .. 0.58
   2 ?   12.1   0.6     4e-05      0.11       9      83 ..      53     128 ..      46     143 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.11
   PF12763.2  8 eikkyweifsglkpednkltgdkvapvlkn 37
                e+k+ w++  g   e+ +lt+++v  v + 
  MMETSP0890-20130614|1426_1 16 ELKEAWNLIAGD--EKTQLTSKEVYKVYRA 43
                556666666553..3344555555555554 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4e-05
   PF12763.2   9 ikkyweifsglkpednkltgdkvapvlkn...skleedklekiwdladidedgkldfeefciamr.lifdlvngeikdv 83 
                  k+y   f+ ++p++ k+      + +++     l +dkl++ +++ d+d+   ++ ++++ +mr l  dl  +ei+d+
  MMETSP0890-20130614|1426_1  53 HKTY---FKQMEPTNGKVDRADFLSTMEDihvNSLANDKLTEAFEIFDLDKKQYFNQDDLARVMRnLGEDLTKDEIRDM 128
                 4444...788999999998877666654411167999************************999844567777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.63
# Mc/sec: 574.36
//
Query:       MMETSP0890-20130614|1430_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-07   29.1   0.0    1.1e-06   28.4   0.0    1.3  1  PF00575.18 S1 RNA binding domain
    5.2e-06   26.3   0.1    1.1e-05   25.2   0.1    1.6  1  PF03876.12 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.7e-10   1.1e-06       1      69 [.      59     138 ..      59     140 .. 0.97

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.7e-10
                 -SSTT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CC............EEEECCCCEETT----EEEEE-EEETT.E CS
  PF00575.18   1 kpekGevvkGtVtsvtkgGafVdlgngvegfipiseissd............rvedpeevlkvgdevevkvlkvdkerkri 69 
                 +p+k+ev++++Vt v++ G++ + g + + f+ ++ +++d              +d+e ++++ + v++++l+v  ++k+i
  MMETSP0890-20130614|1430_1  59 RPFKNEVIDARVTVVNELGFYTEAG-PLTIFVSRHAMPPDllegydrdveawISDDKEVEIRQRCIVRLRLLGVMTDTKQI 138
                 689**********************.**************************99********************9999987 PP

>> PF03876.12  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   1.7e-09   1.1e-05      16      68 ..       2      56 ..       1      58 [. 0.92

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.7e-09
                HHHHHHHHHCCCCTS--S----EEEEE-E..ETTS----------EEEEEEEEEE CS
  PF03876.12 16 edallerllekyegkvvpslGvvvaildi..aevdegkvlggsGsvyfrVtfral 68
                +++++++l +++egk    +G+v++i ++   +v  g++   +G v +++++ a+
  MMETSP0890-20130614|1430_1  2 KTHIKQELMKNLEGKSLGRMGYVICIIKVdeHHVNTGIIDYQTGCVTVNARYSAI 56
                689**************************6566999*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.87
# Mc/sec: 429.69
//
Query:       MMETSP0890-20130614|1429_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-14   50.8   3.5    9.3e-14   50.8   2.4    2.0  2  PF00397.21 WW domain
  ------ inclusion threshold ------
       0.38   10.3  25.8       0.66    9.5  17.9    1.3  1  PF06403.6  Lamprin


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3     2e+03      14      19 ..     114     119 ..     112     119 .. 0.83
   2 !   50.8   2.4   1.4e-17   9.3e-14       1      31 []     177     206 ..     177     206 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.3
                 --EEEE CS
  PF00397.21  14 GrvYYy 19 
                 +++YY+
  MMETSP0890-20130614|1429_1 114 NHPYYV 119
                 789**7 PP

  == domain 2    score: 50.8 bits;  conditional E-value: 1.4e-17
                 ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddddGrvYYyNheTgetqWekP 31 
                 lppgWee++ +d Gr+YY++h+T++t+We+P
  MMETSP0890-20130614|1429_1 177 LPPGWEEKVAPD-GRTYYVDHNTKTTSWERP 206
                 8*****888678.*****************9 PP

>> PF06403.6  Lamprin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  17.9   9.7e-05      0.66      33      91 ..       6      63 ..       3      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 9.7e-05
   PF06403.6 33 tgflghpvgglgygglgygglgvaglgvaglgygglgypgaalggvythhaaglvhpyg 91
                 gf g   gg+g+gg+g+gg g +g g  g g+gg g pga l g+ +  aag v++ +
  MMETSP0890-20130614|1429_1  6 HGFHGGHGGGFGHGGFGHGGWGHGGWGHGGWGHGGPG-PGALLVGAAAGVAAGAVYASS 63
                58999999***************************99.***************998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 762.48
//
Query:       MMETSP0890-20130614|1434_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 1001.76
//
Query:       MMETSP0890-20130614|1431_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-09   37.9   5.9      1e-08   35.5   4.1    2.0  1  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   4.1   7.4e-13     1e-08      24     216 ..     200     494 ..     182     497 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 7.4e-13
                 S----S----TTHHHHHHHHHHHHHHHHHH--....------B---S..--SS--HHHH-SEEE-TSST-.........EEE-T..T---EETTTTEE-B-..--S-GCCS--------.-HHHHHHHHHHH-.........-SHHHHHHHHHH....................HHHHHHHH--.......................................................................................................-----TTGGGGSTHHHHHHHHHHHH CS
  PF00264.15  24 knkgyciHgsvlFltWHRpYlllfEqalreecgyaapdvrlPYWdwa..eeelpedlansaifdkepegk.....gggcvtnplysfkakdltvelgkveedaekkkeaetkrclkrnleatsanqelakqedveellakllsdytgfsntsega..........gksalslespHnavHvwvGg......................................................................................................GhmgdvavaafDPiFflHHaniDrl 216
                 ++  +  H  + F+  H + +++ E+al +++    ++v+  YWd++    el +d+++s+if +++ g+     +++ ++++   f+  ++++++++ +       + ++++ l r+  +t++n+ +++ +    +l ++   y++f ++ e a          ++ ++   + H+ vH+++Gg                                                                                                      G+m  +++a++DP F+  H+  +r+
  MMETSP0890-20130614|1431_1 200 NRECDHYHDDAGFVNHHVAITWQMEDALASVD----TKVAAHYWDYTydALELGTDWYDSIIFADDWFGTanpnnTEHILDKGR--FAYTQVMTNARTYS-------NVTNPYGLLRSPWNTNKNPFVMRFSY---VLGASAGGYSTFPECDEFAlalmtnswigETYNQLNGGFHGPVHIMIGGywgwdpkkwnkiteksrisavglllfakflwrqgysrcpdtcssdtpqdecycecpdtirgnktayqilnesgavemdvfpsdgkgftyeslldglcrigfpGEM-FTSAAPQDPTFWPLHGLAERF 494
                 555567899*********************99....8899*******99999999***************76653333446666..44447777665544.......59999999998745555555555554...55554444444444444445555558995555555668**************************************************************************************************************998887.8999***********988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.70
# Mc/sec: 2129.33
//
Query:       MMETSP0890-20130614|1440_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-10   38.0   3.9      1e-05   24.6   0.0    2.2  2  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
      0.085   11.6   0.0      0.087   11.6   0.0    1.1  1  PF05802.6  Enterobacterial EspB protein


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.2   4.5e-06     0.031       7      36 .]      57      86 ..      52      86 .. 0.88
   2 !   24.6   0.0   1.5e-09     1e-05       2      34 ..      89     121 ..      88     123 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.5e-06
                TEEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19  7 nvlIgpnvvigggviIGdnviIgagvvigg 36
                 +++ + ++++gg+++ +++iIg+g+ i+g
  MMETSP0890-20130614|1440_1 57 SAKVASTATLIGGIEVAADAIIGHGAIING 86
                67888999*******************986 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.5e-09
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                 t IGe + Ig ++v+  gv++ +n+++++g+ +
  MMETSP0890-20130614|1440_1  89 TFIGEASSIGIGAVLKKGVVLEPNATVAPGALV 121
                 78****************************987 PP

>> PF05802.6  Enterobacterial EspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05     0.087      47     122 ..      10      87 ..       4     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
   PF05802.6  47 skllleiqkllgkm.vtllqdyq.qkqlaqsyqiqqavfesqnkaieekkaaataalvGGaissvlGilGsfaainsa 122
                 s+ lle    l ++ +tl  dy     l+q   i   + e         k a+ta+l+GG+  ++  i+G  a in  
  MMETSP0890-20130614|1440_1  10 SRALLECGSSLDRLgMTLAADYSfYDHLSQHRPIVGLMEEGIPSVASSAKVASTATLIGGIEVAADAIIGHGAIINGP 87 
                 6667777666666524455677624678888888887777778888899**********************9999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 505.90
//
Query:       MMETSP0890-20130614|1448_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 606.82
//
Query:       MMETSP0890-20130614|1445_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-24   86.0   0.0    2.6e-24   85.4   0.0    1.3  1  PF00795.17 Carbon-nitrogen hydrolase
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.045   12.8   0.0    1.3  1  PF13387.1  Domain of unknown function (DUF4105)


Domain annotation for each model (and alignments):
>> PF00795.17  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   3.8e-28   2.6e-24       2     182 ..      16     189 ..      15     191 .. 0.85

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 3.8e-28
                 EEE--..-----SHHHHHHHHHHHHHHH------.....---BEE--TTS------....SHHHHHHH-------HHHHHHHHHHHHT-B--EEE---...TSS-.-B-EEEEE-----EEEEEE-SS-.....-T.TT---B------.-B-----....--EEEEETT----HHHHHHHHH----EEEEE CS
  PF00795.17   2 vAsvq..lpqgvaafdlednlpglllliaeaary.....gadlivlPElgitgyahwlglgatealelaetlraevlaalsalarkagitviaGaaek...degg.lyntlvllsadgellgkyrkrhlvpfgmwqpersllgeggatapvfdtpvvavaggklglliCyEilfPelqrmlalkgaeilaiq 182
                 vA++q  +p    + ++e+++ ++++++++++       g+dliv+PE++  g+++     ++e++e+a t+++++++ + +++++ g++ ++ +  +   d+++  yntlvl++++ge+++kyrk+ +     w+p  + + +g  +++v d p    +g+k+ l++C +  +Pe +r  + kgae+++ +
  MMETSP0890-20130614|1445_1  16 VAVYQyeMP---RLHTKEEIMRNVEKICEAVKGTkkgipGMDLIVFPEYSTHGIMY----DLKEMMENATTIPGPETDMFCEVCKEVGVWGVFSLTGErneDPKKrPYNTLVLINDQGEIIQKYRKILP-----WVP-IEGWYPG-DKVHVSDGP----KGMKVSLIVCDDGNYPEIWREASTKGAELIVRC 189
                 789995555...5555555555555555443333445***************9966....99********************************777767755447***********************.....997.8888888.8999****9....78****************************976 PP

>> PF13387.1  Domain of unknown function (DUF4105)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.5e-06     0.045      12      78 ..     209     288 ..     197     298 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.5e-06
   PF13387.1  12 dldslsivlltaspglnepaslfGHtaLrf...........federl..dlvvnygafvf.egnepsfilkglfgkyeysl 78 
                 +++++++ +   ++g++ ++s+fGH+a+               ++ +  +++++   +++ ++++++ ++k l ++y++ +
  MMETSP0890-20130614|1445_1 209 WMNNVYVAVA-NAAGNDGVYSYFGHSAIVGndgrtlgecgeESNGIQygQISISAIRDSRaNDQSQNHLFKLLHRGYNGVY 288
                 5666777744.4555557***********5555555554442222224666555555666766666666777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:01.38
# Mc/sec: 618.19
//
Query:       MMETSP0890-20130614|1450_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-41  140.8   0.1    1.9e-41  140.6   0.0    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme
     0.0024   17.6   0.1     0.0027   17.4   0.1    1.4  1  PF05773.17 RWD domain
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.14   11.7   0.0    1.3  1  PF05743.8  UEV domain
        1.4    9.2   3.9        5.1    7.4   0.0    2.1  2  PF09278.6  MerR, DNA binding


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   5.5e-45   1.9e-41       1     139 [.      13     149 ..      13     150 .. 0.98

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 5.5e-45
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvkek 139
                 r+qkel++l+k+++e  + ++v+d +l +w++++ gp++tpY++g+F++++k+p eYPfk+P+vkf+tki+HPn++  tGeic d++   kW p+l++++ L  i +ll +pn e+pl+ ++a+++ ++r+ ++kk+ke+
  MMETSP0890-20130614|1450_1  13 RIQKELADLDKNPMEYATGGPVDD-DLRNWQIMLSGPAETPYKDGVFEIELKLPAEYPFKAPEVKFKTKIYHPNIKtDTGEICNDVFA--KWGPTLNIRHTLNTIRELLISPNAEHPLEPDIAQEFMEKRADFNKKAKEM 149
                 89*********************8.***************************************************************..6*********************************************9875 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   7.8e-07    0.0027      47      89 ..      54      98 ..      13     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 7.8e-07
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
  PF05773.17 47 klpsleleirlpedYPeeaPiitlsstelsl..kelrkrleekle 89
                k+  +e+e +lp +YP +aP+++++++      k +  ++++++ 
  MMETSP0890-20130614|1450_1 54 KDGVFEIELKLPAEYPFKAPEVKFKTKIYHPniKTDTGEICNDVF 98
                4557999*****************998766655555555555555 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.14      34     120 ..      44     126 ..      26     127 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.2e-05
                 EEE--EE--------EE-EEEE--TTTTTS--EEEE-GCC--TSGGGGGB-----B--HHHHS--T..TT--HHHHHHHHHH------- CS
   PF05743.8  34 nlkGtipveykgatyniPiliwvpesyPveaPivyvkptksmvikknenvdaqGrvylpyLeeWkr..eksnlvslvqelaqafeeepP 120
                  l+G  ++ yk     + i++ +p +yP++aP v  k +    i + +  +  G++  ++  +W +  +  + ++ ++el  + ++e P
  MMETSP0890-20130614|1450_1  44 MLSGPAETPYK--DGVFEIELKLPAEYPFKAPEVKFKTK----IYHPNIKTDTGEICNDVFAKWGPtlNIRHTLNTIRELLISPNAEHP 126
                 55665555665..344678999**********9866554....5555544567999999999999943223345556666556666666 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.8     0.061   2.1e+02      49      65 .]       5      21 ..       5      21 .. 0.86
   2 ?    7.4   0.0    0.0015       5.1      16      57 ..     110     151 ..     110     155 .] 0.91

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.061
                HHHHHHHHHHHHHHHHH CS
   PF09278.6 49 eeqiaeLqalraeLeal 65
                ++++a+L+++++eL++l
  MMETSP0890-20130614|1450_1  5 RRKMAALRRIQKELADL 21
                58999999999999986 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0015
                 -CCCHHHHHHHHHSCC-BHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09278.6  16 sLdEIrelLalyddparpcadvrallaeklaeleeqiaeLqa 57 
                 +L  IrelL  ++ +++  +d  +   ek+a+ +++ +e+ +
  MMETSP0890-20130614|1450_1 110 TLNTIRELLISPNAEHPLEPDIAQEFMEKRADFNKKAKEMVE 151
                 7999*****999999******************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 495.25
//
Query:       MMETSP0890-20130614|1460_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-22   77.5   5.8    1.4e-21   77.1   3.5    1.6  1  PF01145.20 SPFH domain / Band 7 family
     0.0065   16.3   0.8       0.01   15.7   0.5    1.3  1  PF11214.3  Mediator complex subunit 2
     0.0095   15.2   1.0      0.014   14.6   0.7    1.3  1  PF11101.3  Protein of unknown function (DUF2884)


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   3.5     3e-25   1.4e-21       2     178 ..      43     231 ..      42     232 .. 0.93

  Alignments for each domain:
  == domain 1    score: 77.1 bits;  conditional E-value: 3e-25
  PF01145.20   2 tvepgevgvvvrfGkvkr....vlepGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaa.............eaeiaraeae 178
                  ve g+++v+  f ++++     + +G+ f++Pf+++ +++++r +  +++     + tkD + v++  +v  r   ++ + +++++  + +  +++l +l ++ l++v++q+++d++ls r++++ ++++ l ++++ + + + dv+it+  + +e+ +a+++kq a++ea+             +a+i rae+e
  MMETSP0890-20130614|1460_1  43 NVEGGHRAVI--FDQIRGvlplSVSEGTGFRIPFIQTPIIMDIRSRPREIKS---VTGTKDLQMVNIYLRVLSRPreDKLPTIYQTL--GTNFDDRVLPSLGNEVLKSVVAQYNADQLLSMREQISRQIRETLTKRAETFHLILDDVSITHLVFGKEFTSAIEQKQVAQQEAErqtyivakaeqekKAAIIRAEGE 231
                 6899******..99999988898899999***********************...******************9999**********..99**********************************************************************************99777776666666666666666 PP

>> PF11214.3  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   2.3e-06      0.01      41      97 ..     159     222 ..     122     234 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.3e-06
   PF11214.3  41 gfnnqlqksLkekikkFhsiLDdlevk.lndaksyvdtlvelkkk.qe......ekk.lkeEeEkk 97 
                   ++q  ++L+++ ++Fh iLDd+ ++ l  +k++  ++ e+k+  q+          +k E+Ekk
  MMETSP0890-20130614|1460_1 159 QISRQIRETLTKRAETFHLILDDVSIThLVFGKEFTSAI-EQKQVaQQeaerqtY-IvAKAEQEKK 222
                 45666699***************9765277778777666.444440333322211.1123333332 PP

>> PF11101.3  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.7   3.1e-06     0.014      77     143 ..     138     199 ..     134     223 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.1e-06
   PF11101.3  77 sdaldevvtsllgesavraklkelldelkaqvkesfykkddkfvlgaqafsqldeafeeefeqaieq 143
                 +    ev++s+++ + ++++l ++++++++q++e++ k+ ++f l  +++s     f +ef +aieq
  MMETSP0890-20130614|1460_1 138 N----EVLKSVVA-QYNADQLLSMREQISRQIRETLTKRAETFHLILDDVSITHLVFGKEFTSAIEQ 199
                 4....55555555.555699*******************************98899*******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       724  (0.0529549); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.44s 00:00:01.04 Elapsed: 00:00:00.69
# Mc/sec: 1007.16
//
Query:       MMETSP0890-20130614|1468_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-07   27.2  32.3    1.2e-06   26.6  22.4    1.3  1  PF04147.7  Nop14-like family
    0.00034   19.9  14.4    0.00043   19.6  10.0    1.2  1  PF04652.11 Vta1 like
     0.0011   18.9   0.1     0.0018   18.3   0.1    1.3  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
     0.0028   16.8  21.6      0.005   16.0  15.0    1.4  1  PF04886.7  PT repeat
  ------ inclusion threshold ------
       0.01   15.3  35.0      0.021   14.2  24.2    1.5  1  PF05764.8  YL1 nuclear protein
      0.037   13.7  15.1       0.43   10.2  10.5    2.6  1  PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      0.063   11.6  35.5        0.1   10.9  24.6    1.2  1  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  22.4     6e-10   1.2e-06     312     422 ..     255     403 ..     213     441 .. 0.50

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 6e-10
   PF04147.7 312 saddlddefe.................edddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee.....................................aseeeaeakkkkkktkkkkksaeetkeelpftf 422
                  +dd+ d+f+                 +d +   g + +++e+eeee +++e+e+eee+d++ee eeed++ed++++dee+ee+++eee     +                                     +          ++kt +k++++++t+++ ++  
  MMETSP0890-20130614|1468_1 255 IDDDTTDGFHptvekcfeinnlileeiKDLQGGCGSSGSNDEDEEEE-DEEEEEEEEEEDEEEE-EEEDEKEDDDDDDEEEEEEEEEEE-----TpkpttrptprptprpthsptyqptytptkkptkexytK---------TNTKTDTKTNTKTNTETDTKTNT 403
                 45566666667777777777777665555555555553333333333.3333333333333333.222222222222222222222222.....1334689***************99988875443322220.........22222222222222222222222 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6  10.0   2.2e-07   0.00043     149     264 ..     304     426 ..     199     450 .. 0.46

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.2e-07
                 XXXXXXXXXXXX...........................................XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX.. CS
  PF04652.11 149 npgppideeeeeeaesveeipdeqe........aqesldssslpgeassasaspksaeesseslpsdplsa.edsdssapgldadeasaspseapssspgvpsfp..spdeseasnkdsqlPsaPty 264
                 ++ ++++ee+ee     ee++de+e        ++e+ ++ ++p+  + ++++p++ + +s++ +++ +++ + +++ +++++ +++++++++ ++++    +++  +++++++  k+++ +++ ty
  MMETSP0890-20130614|1468_1 304 EEEEEEEEEDEE----EEEEEDEKEddddddeeEEEEEEEEETPKPTTRPTPRPTPRPTHSPTYQPTYTPTkKPTKEXYTKTNTKTDTKTNTKTNTETDTKTNTEtdTKTDTKTDTKTYTKTDTKTY 426
                 111111111111....011111111111122223333333333333333333333333333333333333333333333333333333333333333333333322222222222223333333333 PP

>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   9.3e-07    0.0018       1     173 [.      61     267 ..      61     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 9.3e-07
   PF13472.1   1 valGDSitaGygap.........................................sgegyadrlaaq.lgagvevvnlgcsGattrdglarleadvlallaadpdlvtltlGgNDlgf...g.drtdaslekyeanlaaildalreaapvllvgyppvl.padreppaaglrdaldalnealaeaAa.aygvtyvdlaaafadhegwdkdllapdglHPna 173
                 v++GDSit  +                                            s+++  ++l+++ ++ +++v+ + + Ga    + + l+++       d+d++++++G   l +   + d  ++  + ++++l +  d+l ++   ++ +++ ++ ++d+ +      d ++ ln++ +++   + +v  v++++++  ++  d+d  ++dg+HP+ 
  MMETSP0890-20130614|1468_1  61 VFVGDSITRFCTFGfnvwletgdlpddeyddrwgnndedydccedqewtkdgpksSNGSHRQWLWKEfKDINARVDFYFIQGAWYGAMED-LADE-----VSDYDIIVFNAGYWVLLDddcAtDWSEDCGDDFKDDLSTAADELFKDKIAVWRSTTCCGvEDDGSW-----MDSIESLNDEAEDLLSgKKDVGIVNAYKLWGYND-IDDD--TTDGFHPTV 267
                 799*****8776555577999999999999999999999999999999999888666888888888888889999999999988877764.5565.....58**********99999977743445556788************9999555555554442555555.....99***********875377**********97544.4444..79*****96 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  15.0   2.6e-06     0.005       2      35 ..     341     374 ..     340     376 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.6e-06
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 +T  Pt++PT  PT  Pt  PT qPt  Pt +Pt
  MMETSP0890-20130614|1468_1 341 ETPKPTTRPTPRPTPRPTHSPTYQPTYTPTKKPT 374
                 6778999999999999999999999999999998 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  24.2   1.1e-05     0.021      42     162 ..     298     429 ..     278     447 .. 0.46

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.1e-05
   PF05764.8  42 EeedDeefeeeeeeeeeeeDsdfddseddeeesddeeegekele.keekekkkkrkkkkaykeplk...........kkkkkkkkaak...kkkaaaeekkkkkerkseaetlldkkrRkSsRsstvenkealeek 162
                 Eee+Dee eeee    eeeD++ +++ed++e++dd++e+e+e+e +ee  k   r + + +++p+            kk+ k+ + ++   ++++ +++ ++++ +k++ et++++++++ + + t+  ++   + 
  MMETSP0890-20130614|1468_1 298 EEEEDEEEEEEE----EEEDEEEEEEEDEKEDDDDDDEEEEEEEeEEETPKPTTRPTPRPTPRPTHsptyqptytptKKPTKEXYTKTntkTDTKTNTKTNTETDTKTNTETDTKTDTKTDTKTYTKTDTKTYIKT 429
                 333333322222....222555555555533344443333333414444444555566666666667776777666544444332222111222222222223333333333333335555555555444443333 PP

>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.5   0.00022      0.43       5     110 ..      50     170 ..      46     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00022
   PF13839.1   5 daqkcLeklrgkrlvFvGDSlnRnqyeslvcllskv.ekawe.....................skkksdeeengrefvfk.fksynvtlefywdpyLvedsidkeigklwkesqagadvlvfnsglWwl 110
                 +a+ +Le   +k++vFvGDS++R   + +   l +  ++++e                     ++  ++ + ++r++ +k fk+ n++++fy  +  +   ++ + +++      + d++vfn+g W l
  MMETSP0890-20130614|1468_1  50 EAKCLLE---NKKIVFVGDSITRFCTFGFNVWLETGdLPDDEyddrwgnndedydccedqewtKDGPKSSNGSHRQWLWKeFKDINARVDFYFIQGAWYGAME-DLADEVS----DYDIIVFNAGYWVL 170
                 5566677...*************88888888887751344448888899888888888887774444444555688888559999999999986666645544.6666666....9***********98 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  24.6   5.2e-05       0.1     460     584 ..     294     418 ..     278     450 .. 0.37

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.2e-05
  PF03344.10 460 dkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedeekndevakgirvseeqqkressvqpespkeepqepeavdaekegeesdeellaeeeplsshtelesvatveerdisskrkl 584
                 ++++eeee+eeeeeeeee+d+eeee+ ++++++++ddeeeee+ee+++ +    r +   ++r ++    +p+  p+++++ +  ++ + + +  ++ ++  +  t++++++ ++  + ++++  
  MMETSP0890-20130614|1468_1 294 NDEDEEEEDEEEEEEEEEEDEEEEEEEDEKEDDDDDDEEEEEEEEEEETPKPTTRPTPRPTPRPTHSPTYQPTYTPTKKPTKEXYTKTNTKTDTKTNTKTNTETDTKTNTETDTKTDTKTDTKTY 418
                 23444444444444444444444444444444444444444444433333333333333333333333333333333333333222222222222222222222222222222211111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1852  (0.135459); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                       189  (0.0138239); expected 13.7 (0.001)
Passed Fwd filter:                        82  (0.00599766); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.86u 0.40s 00:00:02.26 Elapsed: 00:00:01.48
# Mc/sec: 730.24
//
Query:       MMETSP0890-20130614|1470_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-22   77.8   0.0    1.3e-21   77.0   0.0    1.4  1  PF13883.1  Pyridoxamine 5'-phosphate oxidase
      6e-16   58.3   0.0    1.3e-15   57.2   0.0    1.6  1  PF10615.4  Protein of unknown function (DUF2470)
    7.8e-09   35.3   0.0    1.4e-08   34.4   0.0    1.4  1  PF01243.15 Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
        0.1   11.9   0.0       0.95    8.8   0.0    2.3  2  PF13134.1  Protein of unknown function (DUF3948)


Domain annotation for each model (and alignments):
>> PF13883.1  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   3.8e-25   1.3e-21      11     170 .]     103     246 ..      94     246 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 3.8e-25
   PF13883.1  11 Rtlv.hreslgtlstisttkdiegapfanvvsisdgaaddstGnpylllvdisstvqniqanskasltiseaqkpeckkkkvdpesptcaRvsltGklekvesdekklaekcflsrHpdakkWlpgnsihkshfvkL.eveeiylvggFGgaayidaeeYls 170
                 Rt++ +++ +++lst+st++di g+p+++vv ++    +d++G p++ ++ +ss+++n++++ +a lt++e++              + aR+ ltG +e+++ +e +++++++l+ Hp+a  W++     ++  +++ ++++i +vggF +a  i+a+eY++
  MMETSP0890-20130614|1470_1 103 RTMMaQKSGFAVLSTFSTNEDIFGYPVGSVVGFA----TDDEGRPIFCFSGMSSHTKNLDKDGRAALTVTEPDFVGA----------ADARCVLTGDIERISGKEDEALRASYLKSHPNA-FWVQF---GDFAMYRMtQIKDISFVGGFARAGSITADEYFK 246
                 555505566899*********************8....89******************************9987755..........459*****************************8.68888...8*******66*********************96 PP

>> PF10615.4  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   3.7e-19   1.3e-15      11      82 ..     257     333 ..     248     334 .. 0.92

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 3.7e-19
   PF10615.4  11 ariisHMNeDHadalalyaqhyggvskaesarmtdidleglelev.....gdkktlrvpFepplessedvrqrlvam 82 
                 a + +HMN+DH+d+l+ y++ + g + ++sa+m+++d+ g++++v     g++  lrvpF++p+ +++ v+++ +++
  MMETSP0890-20130614|1470_1 257 APVAEHMNADHQDSLKSYVETLVGTAPVASAQMKRLDRFGFDVRVvdkesGSTGVLRVPFPEPIVDRAAVKTAFIQL 333
                 7789*********************999******************99877889********************998 PP

>> PF01243.15  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   4.1e-12   1.4e-08       3      88 ..     100     192 ..      99     193 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 4.1e-12
                 HHHHHHHC.CTTEEEEEEE---....-.EEEEEEECEEETTCTEEEEEEETTSHHHHHHHH--EEEEEEEETT...GGTEEEEEEEEEEEE-CH CS
  PF01243.15   3 eelrelle.eskagtLATvdkd....GrPsaspvllkygdgrdgiyfatnkdsrkvrnleenpkvsllfvdde...elgrqvrieGraeilsde 88 
                 ee+r++++ +s +++L+T + +    G+P  s+v+++ +d+  +++f  + +s +++nl ++ +++l++ +++    ++ +  + G +e +s +
  MMETSP0890-20130614|1470_1 100 EEIRTMMAqKSGFAVLSTFSTNedifGYPVGSVVGFATDDEG-RPIFCFSGMSSHTKNLDKDGRAALTVTEPDfvgAADARCVLTGDIERISGK 192
                 577777775889******775544999**********99998.******************************998778888888888888765 PP

>> PF13134.1  Protein of unknown function (DUF3948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00028      0.95       7      25 ..     165     183 ..     162     186 .. 0.93
   2 ?   -0.0   0.0      0.16   5.6e+02      21      29 ..     324     332 ..     323     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00028
   PF13134.1   7 lqvtKmDlLGsAsGAvvLT 25 
                 l+vt  D++G A +  vLT
  MMETSP0890-20130614|1470_1 165 LTVTEPDFVGAADARCVLT 183
                 9*****************9 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.16
   PF13134.1  21 AvvLTalIv 29 
                 A+v Ta+I 
  MMETSP0890-20130614|1470_1 324 AAVKTAFIQ 332
                 8999****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.87
# Mc/sec: 955.79
//
Query:       MMETSP0890-20130614|1463_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-19   69.8   0.0      2e-19   69.7   0.0    1.1  1  PF00884.18 Sulfatase


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.5e-23     2e-19     209     320 ..      46     165 ..      14     189 .. 0.86

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 1.5e-23
                 HHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG.........HHH-TT----HHHHHHCCBEEEEEEE----TT.EE-S-EEGGGHHHHHHHH---........--TTST-- CS
  PF00884.18 209 leaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee.........gngplrggkgvnayeggtrvPllvwwpggkaprvseelvshvDlaptildlagi...lpkvegpkdrlld 320
                  ++y +sv++ D ++ + l+ L+e g ++++l+++tSD+g+++           +  ++rg+k+ + yeggtrvP++++w+++ ++ + ++    +Dl+pt+ +l++    l   ++ k+ +ld
  MMETSP0890-20130614|1463_1  46 ERVYRASVYEFDMLVRDALNLLDEFGRSNDALIIVTSDNGPEVPTgrlcwsqrgNVMHFRGYKR-SLYEGGTRVPFIMRWSKIPKS-IIHQDLYGIDLLPTFVHLVDRaqwL--KNQLKQLHLD 165
                 57899**************************************77********88899******.*********************.88888888**********9763331..3445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 707.85
//
Query:       MMETSP0890-20130614|1492_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.093   12.8   1.7       0.96    9.6   0.1    2.4  2  PF03726.9 Polyribonucleotide nucleotidyltransferase, RNA binding domain
       0.13   11.7   0.4       0.35   10.3   0.3    1.7  1  PF11776.3 Domain of unknown function (DUF3315)


Domain annotation for each model (and alignments):
>> PF03726.9  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.034   2.3e+02      19      37 ..     136     155 ..     125     169 .. 0.82
   2 ?    9.6   0.1   0.00014      0.96       6      43 ..     175     212 ..     172     224 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.034
   PF03726.9  19 ti.teKqeRyaaldeikakv 37 
                 ti ++K+ R+ +l++ik++ 
  MMETSP0890-20130614|1492_1 136 TIkKQKESRQVKLQKIKNAT 155
                 5558999**********976 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00014
   PF03726.9   6 vaelaeeelsealtiteKqeRyaaldeikakvveafaa 43 
                 v+++a+++  +a++ + K  Ry +  ei++k+  ++ +
  MMETSP0890-20130614|1492_1 175 VKAIAKARSDDAFEEKAKFHRYLQAAEIEDKICIHLDK 212
                 899***************************99877764 PP

>> PF11776.3  Domain of unknown function (DUF3315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   5.1e-05      0.35      23      44 ..      45      67 ..      37      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.1e-05
                --------EEEE--.--EEEE-T CS
   PF11776.3 23 LpaPprgyrWvrvg.gdyvLvai 44
                Lp+Pp+g  W + + g+y Lv+ 
  MMETSP0890-20130614|1492_1 45 LPPPPQGWAWKKDDkGNYELVQS 67
                9********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.08
# Mc/sec: 894.20
//
Query:       MMETSP0890-20130614|1496_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-20   71.2   0.0    9.7e-20   70.6   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    1.7e-10   41.1   0.6    7.3e-08   32.4   0.4    2.3  1  PF12697.2  Alpha/beta hydrolase family
    1.8e-05   23.9   0.0     0.0031   16.6   0.0    2.2  2  PF00326.16 Prolyl oligopeptidase family
      0.004   16.5   0.0     0.0056   16.0   0.0    1.1  1  PF03959.8  Serine hydrolase (FSH1)
     0.0063   16.1   0.0        1.2    8.6   0.0    2.1  2  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.042   12.4   0.1      0.096   11.2   0.0    1.5  2  PF05677.7  Chlamydia CHLPS protein (DUF818)
       0.15   11.1   0.0        0.4    9.8   0.0    1.7  1  PF01738.13 Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0     5e-23   9.7e-20       1     141 [.      50     224 ..      50     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 5e-23
   PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdlpghgasegaaaakrvl......aadll........dleriilvGhSlGGgvalelagrddrvkglvllap......f................pdgedlakltlpvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                 +++++h ++ d     p+ + l++  g  v+a+++ g++ s+g++  +  +      +   +         ++ri+++G+S+G+g+++ la+r +++ g++l +p      +                 + ++++++++ +l+ihG++D++vp+++a+ l+  ++ ++  ++iega+H
  MMETSP0890-20130614|1496_1  50 TILYSHANAEDLGLSLPFLDVLSRFcGADVLAYEYCGYSISSGEPSESGCIqcidaaY---AylveeclvPPQRIVVYGRSIGSGPTVDLASRTPQLGGMILQSPiasaglVvlppsvckalssydlfRNYAKMNDVHCRTLIIHGKDDKMVPFDHAQMLFPLVRDKHPPLWIEGAGH 224
                 68999*******************9******************995555554443331...12235566899********************99***********6665550555566666666666355789********************************************* PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.4   3.7e-11   7.3e-08       5     217 ..      55     226 ..      51     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 3.7e-11
                 -----------HHHHHHTT..TSEEEEE-----------S...S--HHHHHHHHHHHHHH--....--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------H...HHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEE.EE---SSSS- CS
   PF12697.2   5 HGlggsaeswrplaeaLaa..gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl...rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlr...ealarldvPvlviageaDrvvppeearrlaealpgarv.vvlpgagHll 217
                 H++  + +   p+++ L++  g +v+a+++ G+  S++ p+     + + ++++ a+l + +l   +++v+ G S G   +  +a+r p+ + g++l +p +                   a       +l             ++++++a            l+  dl    + +  +++ +l+i+g++D++vp ++a+ l   + ++    +++gagH+ 
  MMETSP0890-20130614|1496_1  55 HANAEDLGLSLPFLDVLSRfcGADVLAYEYCGYSISSGEPS--ESGCIQCIDAAYAYLVEECLvppQRIVVYGRSIGSGPTVDLASRTPQ-LGGMILQSPIA-------S-----------A-------GL----------VVLPPSVCKA------------LSSYDLFrnyAKMNDVHCRTLIIHGKDDKMVPFDHAQMLFPLVRDKHPpLWIEGAGHHD 226
                 666666666789999999777****************9996..4556667776666554444456689*********************6.9**********.......6...........1.......11..........1122333332............23344440114455569***********************9998876449*******84 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0047       9.1      50      75 ..     105     130 ..      95     155 .. 0.78
   2 !   16.6   0.0   1.6e-06    0.0031     128     187 ..     170     224 ..     161     249 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0047
                 HHHHHHHH-----GGGEEE------- CS
  PF00326.16  50 aaaealakegyvdpdrlaitGgSyGG 75 
                 aa  +l++e +v p+r++++G S G 
  MMETSP0890-20130614|1496_1 105 AAYAYLVEECLVPPQRIVVYGRSIGS 130
                 5667889999*************995 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.6e-06
                 .HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---- CS
  PF00326.16 128 gyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegH 187
                  y+ + +y++++   + +++l+ihG  D+ vp+ +a +l+   ++++ +   l+  ++gH
  MMETSP0890-20130614|1496_1 170 SYDLFRNYAKMND--VHCRTLIIHGKDDKMVPFDHAQMLFPLVRDKHPP---LWIEGAGH 224
                 4555566666666..99*******************9999887765443...34455555 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-06    0.0056     150     204 ..     163     229 ..     123     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.9e-06
   PF03959.8 150 k..........yeeyyeedkiqtpsLhvlGelDtvvdeerseaLaeafkns..skvlkHpggHfvPn 204
                 +          +++y + +++ +++L ++G+ D++v+ + ++ L   ++++  + +++  g H  P 
  MMETSP0890-20130614|1496_1 163 SvckalssydlFRNYAKMNDVHCRTLIIHGKDDKMVPFDHAQMLFPLVRDKhpPLWIEGAGHHDMPD 229
                 366666665656666688899**************************99998888888899999986 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00064       1.2       5      53 ..     102     150 ..     100     159 .. 0.88
   2 !    5.4   0.0    0.0059        11     109     161 ..     178     224 ..     164     241 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00064
                 HHHHHHHHHHCSTTB-------B------HHHHHHHHHSSS---EEEE- CS
   PF08840.6   5 YFeeainyLlrhpkvkkdkigllGiSkGgelalllasflkkisavvlin 53 
                 + + a++yL +   v  ++i ++G+S G+  ++ las+ ++   ++l +
  MMETSP0890-20130614|1496_1 102 CIDAAYAYLVEECLVPPQRIVVYGRSIGSGPTVDLASRTPQLGGMILQS 150
                 67789********************************999887777665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0059
                 --GGG----EEEEE----SSS-HHHHHHHHHHHHHH----.--EEEE------ CS
   PF08840.6 109 ipverakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGH 161
                  ++ + ++  l++ g+dDk++p ++ a+++    + ++    +  +  ++aGH
  MMETSP0890-20130614|1496_1 178 AKMNDVHCRTLIIHGKDDKMVPFDH-AQMLFPLVRDKHP---PLWI--EGAGH 224
                 5788899**************9654.4344333333222...2333..66666 PP

>> PF05677.7  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.9e-05     0.096     165     226 ..      70     130 ..      51     137 .. 0.90
   2 ?   -2.8   0.0      0.91   1.8e+03     287     302 ..     181     196 ..     176     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.9e-05
   PF05677.7 165 rlakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGt 226
                  l++  ga++l + Y G   s Ge +     +  +a   YL ++   P  ++i+ yG s+G+
  MMETSP0890-20130614|1496_1  70 VLSRFCGADVLAYEYCGYSISSGEPSESGCIQCIDAAYAYLVEECLVPP-QRIVVYGRSIGS 130
                 5778899**************************************9996.67********96 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.91
   PF05677.7 287 edLkCpeifiygedsr 302
                 +d++C  ++i+g+d +
  MMETSP0890-20130614|1496_1 181 NDVHCRTLIIHGKDDK 196
                 6899********9975 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0002       0.4      83     179 ..     104     218 ..      92     225 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
  PF01738.13  83 kaainylkslpevstkkvgvvGfClGGalalllAaenpevdaavafYG..................altlekpleeaakikapilahlgeeDpfipaeaaedleealakankdle 179
                 +aa +yl +   v +++++v G  +G   +++lA++ p++ +++   +                     l ++ ++ +++ ++ l+++g++D+++p ++a+ l   +++++++l 
  MMETSP0890-20130614|1496_1 104 DAAYAYLVEECLVPPQRIVVYGRSIGSGPTVDLASRTPQLGGMILQSPiasaglvvlppsvckalsSYDLFRNYAKMNDVHCRTLIIHGKDDKMVPFDHAQMLFPLVRDKHPPLW 218
                 566677766666788889999999999999999999988998888888888889988888888776555677888999*********************9998888877777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.88
# Mc/sec: 776.09
//
Query:       MMETSP0890-20130614|1503_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   13.4   0.2         22    4.1   0.0    3.0  3  PF12974.2 ABC transporter, phosphonate, periplasmic substrate-binding protein


Domain annotation for each model (and alignments):
>> PF12974.2  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0019        26      43      65 ..       2      24 ..       1      49 [. 0.79
   2 ?    4.1   0.0    0.0016        22      20      55 ..      77     112 ..      71     127 .. 0.84
   3 ?    1.8   0.1    0.0083   1.1e+02     189     219 ..     191     221 ..     148     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0019
   PF12974.2 43 vealrsgqvDlaflgplayvqar 65
                 eal+sg++D+a + ++a+v+ r
  MMETSP0890-20130614|1503_1  2 TEALKSGELDVACMLTEAAVAER 24
                69************999999865 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0016
   PF12974.2  20 aeyLseelGvpvelvvatdyaalvealrsgqvDlaf 55 
                 +++ ++++  p ++ ++++ +++ +alrs+q+Dl +
  MMETSP0890-20130614|1503_1  77 IDAQQRNVPKPRDFIIVNSLQGARDALRSDQADLFM 112
                 55556777888999999****************976 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.0083
   PF12974.2 189 ppipndpivvrkdldeelkkkiqdallslde 219
                   ++   +++++++++++ + ++d l++++ 
  MMETSP0890-20130614|1503_1 191 TWLATVAWCAQPHMPKSVISLVTDTLIDANI 221
                 55667789******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.85
# Mc/sec: 690.71
//
Query:       MMETSP0890-20130614|1506_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-57  193.6   0.0    3.1e-57  193.2   0.0    1.1  1  PF01564.12 Spermine/spermidine synthase
     0.0001   21.8   0.0    0.00021   20.8   0.0    1.5  1  PF05430.6  S-adenosyl-L-methionine-dependent methyltransferase
    0.00079   19.3   0.0     0.0021   17.9   0.0    1.7  2  PF13659.1  Methyltransferase domain
     0.0047   17.1   0.0       0.01   16.0   0.0    1.6  1  PF13649.1  Methyltransferase domain
  ------ inclusion threshold ------
        0.1   13.3   0.0       0.25   12.0   0.0    1.7  1  PF13578.1  Methyltransferase domain
       0.11   12.3   0.1        4.1    7.2   0.0    2.3  2  PF02865.12 STAT protein, protein interaction domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.2   0.0   1.4e-60   3.1e-57       2     232 ..      30     262 ..      19     276 .. 0.94

  Alignments for each domain:
  == domain 1    score: 193.2 bits;  conditional E-value: 1.4e-60
                 EEEESST.T----EEEEEEEEEEEEEEESSSEEEEEEES----EEEE---EEEETTTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--.TT-TTEEEEE----HHHHTCSS.-BSEEEESSS-..----GGGCCSHHHHHHHHHHB-----EEEE-..--TTTSHHHHHHHHHHHHHHSSCEEEEEE--TTS-SS-EEE CS
  PF01564.12   2 wfeeelsqfdpglgveykvekvlyeekskiqeieifesspfGkillLdgrvqltekdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslais.lndervkvvigdgfkflkaylvrkfDvvivdstd..pvgpaenlFskefydllkkalkedGvivlQa..kspelekelvinvdksgkqvfaqvepyavlvptylsgminf 232
                 wf ee+    + l +++k +++  + +s++q ++i+e++pfGk l+Ldg+ q +  def+y+e++vh ++l h  pk+V i GGg   ++re+++h +v+++++vd+D +v+d++++ lp+ +++  +d+r++v+igd+ +fl + +   fDv+i d +d  + gpa  l++++fy+l++k+l+++Gv+v+Q+     +  ke ++ ++ +++++f  v p+ + +p+++s + +f
  MMETSP0890-20130614|1506_1  30 WFDEEVM--EDALVIRMKLNSISTDVESEFQRVQIIETKPFGKTLVLDGKTQSALGDEFVYHESLVHAAMLWHDDPKRVYIGGGGELATAREVLRHASVQEVVMVDLDGLVVDVCKEKLPEWNANsTDDPRLTVHIGDARTFLLDKKSGFFDVIILDISDpiEAGPAVHLYTQDFYKLVAKKLNPNGVVVTQSgpAGLFNSKECFTAINHTLRSAFNHVAPFSASIPSFGSDW-GF 262
                 7888888..889****************************************************************************************************************99********************999***********555688888************************87788999****************************9864.22 PP

>> PF05430.6  S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.3e-08   0.00021      29      90 ..     155     220 ..     133     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.3e-08
                 --EEEEEE---HHHHHHHC-.T-BSEEEE----TTT-.G..CCSSHHHHHHHHHHB-----EEES- CS
   PF05430.6  29 eevtlklligdarealkeld.ekadawFlDgFsPakn.P..elwseellkelarllkkkgtlatys 90 
                 ++ +l+++igdar++l   +   +d++ lD   P  + P   l++++++k++a++l+++g+++t s
  MMETSP0890-20130614|1506_1 155 DDPRLTVHIGDARTFLLDKKsGFFDVIILDISDPIEAgPavHLYTQDFYKLVAKKLNPNGVVVTQS 220
                 5679**********998777699***********875333379*******************9976 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.1e-07    0.0021       7     112 ..     109     217 ..     103     221 .. 0.77
   2 ?   -2.5   0.0         2   4.6e+03      86     103 ..     272     289 ..     262     313 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.1e-07
   PF13659.1   7 pgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl....aervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlv 112
                  g G+  ++  +l+++  ++++ v+ld   +++++++l++ ++    ++r++v+ gd+r++    ++g fd+++ +       +a  a +  +  f +  a+ l p+Gv+v
  MMETSP0890-20130614|1506_1 109 GGGGELATAREVLRHAsVQEVVMVDLDGLVVDVCKEKLPEWNAnstdDPRLTVHIGDARTFLLDKKSGFFDVIILDISDP--IEAGPAVHLYTQDFYKLVAKKLNPNGVVV 217
                 555666677777777788*****************9998843333446779*********994445688******87543..55667777788889999999999999887 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2
   PF13659.1  86 araalrdlydafleaaar 103
                 ++ +l+ ++ a ++ + +
  MMETSP0890-20130614|1506_1 272 DKSNLHLTHPAYIDTIDQ 289
                 444444333333333333 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.4e-06      0.01       8      87 ..     110     203 ..     106     221 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.4e-06
   PF13649.1   8 sGrviraltral.dkgpeqrvigvDiseealelakerlsskgl......kvkfvqadara..lpfeegefdlvvc.......aglslehlspkqle 87 
                 +G +++ + + l ++   q+v+ vD++   ++ +ke+l ++++      + +++++dar   l++++g fd++++       ag    hl  +++ 
  MMETSP0890-20130614|1506_1 110 GGGELATAREVLrHAS-VQEVVMVDLDGLVVDVCKEKLPEWNAnstddpRLTVHIGDARTflLDKKSGFFDVIILdisdpieAGP-AVHLYTQDFY 203
                 5556666666663333.4*****************99988777777888*********997778999*******97777777555.3344434444 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.25       3     102 ..     108     217 ..     106     220 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
   PF13578.1   3 iGvysGvstlvllqalkrngagrlysvdpdpg.....aeeaaalaeeagladrvrllkgdseealasladgsiDllfiDgghaa.......eavladleallprlapggvvl 102
                 iG   G   +   ++l+++   +++ vd d       +e+  ++ +++  + r++++ gd++  l + ++g +D++++D +            ++ +++++ ++l+p+gvv+
  MMETSP0890-20130614|1506_1 108 IG--GGGELATAREVLRHASVQEVVMVDLDGLvvdvcKEKLPEWNANSTDDPRLTVHIGDARTFLLDKKSGFFDVIILDISDPIeagpavhLYTQDFYKLVAKKLNPNGVVV 217
                 56..6666677777778777788999998884444443333333333555669**********9888888**********765322222213577778999*********98 PP

>> PF02865.12  STAT protein, protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.049   1.1e+02      74      99 ..      34      59 ..      31      64 .. 0.88
   2 ?    7.2   0.0    0.0018       4.1      86     122 ..     300     332 ..     267     334 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.049
  PF02865.12 74 lseedsfllkiklkeiaknlqkkyqe 99
                 + ed ++ ++kl++i++++++++q+
  MMETSP0890-20130614|1506_1 34 EVMEDALVIRMKLNSISTDVESEFQR 59
                567899****************9986 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0018
  PF02865.12  86 lkeiaknlqkkyqenPlelariirniLqeEkrlvqea 122
                 l    ++   + +++  +l + irn Lq E r+++e+
  MMETSP0890-20130614|1506_1 300 L----RHYDAQTHACQFNLTKSIRNHLQAEDRVITEE 332
                 2....4445555678899****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.80
# Mc/sec: 1012.46
//
Query:       MMETSP0890-20130614|1501_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-25   88.2   0.1    3.8e-25   88.0   0.1    1.1  1  PF00071.17 Ras family
     0.0012   19.1   0.0     0.0024   18.2   0.0    1.5  2  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.1   5.5e-29   3.8e-25      77     160 ..       1      84 [.       1      86 [. 0.97

  Alignments for each domain:
  == domain 1    score: 88.0 bits;  conditional E-value: 5.5e-29
                 EE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17  77 lvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +vyd+ts+esf++v++w+ e++r+a+e++  +LvGnK+D+ ++++vste+++e+a++lg++fletSAk+++nveeaf +++ e+
  MMETSP0890-20130614|1501_1   1 MVYDVTSQESFDHVAEWLAEVNRYANEGTCKLLVGNKSDMGTEKCVSTETAKEYADSLGIPFLETSAKNATNVEEAFLTMAAEL 84 
                 69*****************************************************************************99887 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.5e-07    0.0024      79     119 .]       1      39 [.       1      39 [. 0.93
   2 ?   -3.0   0.0       1.3   8.9e+03      38      55 ..      71      88 ..      62      95 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.5e-07
   PF08477.8  79 lvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                 +vyd+t++es+++v    +wlae ++++++     lvgnk D
  MMETSP0890-20130614|1501_1   1 MVYDVTSQESFDHV---AEWLAEVNRYANEgTCKLLVGNKSD 39 
                 59***********9...78999999999999999******98 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.3
   PF08477.8 38 lavktlevdvdtellelw 55
                ++v++ ++ +++el++l+
  MMETSP0890-20130614|1501_1 71 TNVEEAFLTMAAELIKLR 88
                444555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.82
# Mc/sec: 350.69
//
Query:       MMETSP0890-20130614|1505_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.013   15.1   0.0    1.2  1  PF02454.11 Sigma 1s protein


Domain annotation for each model (and alignments):
>> PF02454.11  Sigma 1s protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   9.2e-07     0.013      69      97 ..      38      66 ..      11      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.2e-07
  PF02454.11 69 kqlsadlirvyPswVtEsmllrqeLqsyi 97
                 q  a l r+yP+ V+ s+ +rqeLq + 
  MMETSP0890-20130614|1505_1 38 EQFHASLERAYPQHVAASKRQRQELQTFF 66
                56678888******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      561  (0.0410328); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.55
# Mc/sec: 422.63
//
Query:       MMETSP0890-20130614|1512_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.1   0.7      0.017   14.0   0.5    1.1  1  PF01544.13 CorA-like Mg2+ transporter protein
      0.046   13.3   0.0      0.051   13.1   0.0    1.1  1  PF12318.3  Membrane bound FAD containing D-sorbitol dehydrogenase
        0.8    9.5   3.9       0.47   10.3   1.1    1.8  2  PF03902.8  Gal4-like dimerisation domain


Domain annotation for each model (and alignments):
>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   3.8e-06     0.017     102     153 ..      11      62 ..       2      84 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.8e-06
  PF01544.13 102 gekpkspgellyelldeivdryfeilekleeeldeledeledetkkellrei 153
                 ++  k+  ++l+++ d++ +++f+++++ +++l +le+ l++e  +++ ++ 
  MMETSP0890-20130614|1512_1  11 SKLLKDHLQILFRVADHMAEAFFQEVDTFDDRLIHLEQLLNKEACRDDRDDF 62 
                 566789999*******************************888777777665 PP

>> PF12318.3  Membrane bound FAD containing D-sorbitol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.051      46      95 ..      11      63 ..       9      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
   PF12318.3 46 SraLtgredldpalgarlyaaLlksdaefaaklaaLaqllakskl...adkfa 95
                S++L ++ ++  ++++++ +a+ ++  +f+++l +L+qll+k+      d+f+
  MMETSP0890-20130614|1512_1 11 SKLLKDHLQILFRVADHMAEAFFQEVDTFDDRLIHLEQLLNKEACrddRDDFL 63
                788999999999*****************************777654444444 PP

>> PF03902.8  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.27   1.2e+03      37      48 ..      11      22 ..       2      37 .. 0.59
   2 ?   10.3   1.1    0.0001      0.47      10      38 ..      41      69 ..      30      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.27
   PF03902.8 37 kaqlrelltklg 48
                 + l++ l+ l+
  MMETSP0890-20130614|1512_1 11 SKLLKDHLQILF 22
                334444444444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0001
   PF03902.8 10 nRleqLEqlLkelfpdeDiDellkdkdka 38
                 Rl +LEqlL +   + D D  l ++d+ 
  MMETSP0890-20130614|1512_1 41 DRLIHLEQLLNKEACRDDRDDFLSNRDDD 69
                69*********************998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.46s 00:00:00.80 Elapsed: 00:00:00.52
# Mc/sec: 474.66
//
Query:       MMETSP0890-20130614|1521_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-10   39.1   0.1      7e-10   38.3   0.0    1.4  1  PF01472.15 PUA domain


Domain annotation for each model (and alignments):
>> PF01472.15  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   5.1e-14     7e-10       6      74 .]      90     163 ..      88     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 5.1e-14
                 ----HHHHC----B------EE-TT-....------EEEETT.--EEEE-EESS-HHHHHHHHT---EEEEEEE CS
  PF01472.15   6 ddgAvkavlsgasLlapGVievegdf....regdeVvivted.gelvavGlanysseelakikggksvkiervl 74 
                 d+gA+++vl ga++++pG +  +gd       +  V + + +   + +vG++++  +e+a+  +g++v++ ++l
  MMETSP0890-20130614|1521_1  90 DAGAIRFVLGGANIMCPGFTHTDGDYsneiPVDAPVIVNAAGkHCAMCVGQVKMAKSEMATSGKGIAVDNLHFL 163
                 99**********************997775666666666664367899*********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.46s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 641.49
//
Query:       MMETSP0890-20130614|1523_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-43  147.2   0.1    6.8e-43  145.9   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.2e-07   30.3   0.0    8.4e-07   28.9   0.0    1.7  1  PF07724.9  AAA domain (Cdc48 subfamily)
    4.2e-07   29.6   0.1    1.7e-06   27.7   0.0    2.1  1  PF07728.9  AAA domain (dynein-related subfamily)
      6e-06   26.2   0.0    0.00029   20.8   0.0    2.5  1  PF13401.1  AAA domain
    1.2e-05   25.6   0.0    2.5e-05   24.5   0.0    1.6  1  PF13191.1  AAA ATPase domain
    6.6e-05   21.9   0.0    0.00014   20.8   0.0    1.5  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    6.9e-05   23.5   0.0    0.00016   22.2   0.0    1.7  1  PF13207.1  AAA domain
    8.1e-05   22.1   0.1    0.00018   21.0   0.1    1.6  1  PF13245.1  Part of AAA domain
    0.00045   19.5   0.0     0.0008   18.7   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
     0.0014   18.4   0.0     0.0027   17.4   0.0    1.6  1  PF13671.1  AAA domain
     0.0024   17.6   0.0     0.0045   16.7   0.0    1.5  1  PF13173.1  AAA domain
     0.0032   16.4   0.0     0.0072   15.3   0.0    1.6  1  PF06414.7  Zeta toxin
     0.0033   17.2   0.0     0.0062   16.3   0.0    1.5  1  PF13521.1  AAA domain
     0.0033   16.0   0.0     0.0058   15.2   0.0    1.4  1  PF06068.8  TIP49 C-terminus
     0.0035   16.7   0.1      0.042   13.2   0.0    2.6  1  PF00158.21 Sigma-54 interaction domain
      0.004   16.3   0.0      0.069   12.2   0.0    2.3  2  PF02562.11 PhoH-like protein
     0.0042   16.5   0.0       0.01   15.3   0.0    1.7  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0054   15.7   0.1      0.013   14.6   0.0    1.5  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0085   16.2   0.0      0.031   14.4   0.0    2.0  2  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.026   14.6   0.0    1.4  1  PF00910.17 RNA helicase
      0.014   14.6   0.1      0.049   12.9   0.0    1.8  1  PF13481.1  AAA domain
      0.018   14.5   0.0      0.034   13.6   0.0    1.4  1  PF13479.1  AAA domain
      0.028   13.2   0.0      0.051   12.3   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
      0.034   12.9   0.0      0.056   12.2   0.0    1.3  1  PF01057.12 Parvovirus non-structural protein NS1
       0.04   12.9   0.0       0.12   11.2   0.0    1.9  2  PF06745.8  KaiC
        0.1   12.0   0.0       0.49    9.8   0.0    2.0  2  PF05729.7  NACHT domain
        0.1   12.2   1.1       0.32   10.6   0.8    1.8  1  PF02185.11 Hr1 repeat


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   1.3e-45   6.8e-43       1     131 [.     153     285 ..     153     286 .. 0.97

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 1.3e-45
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vllyGppGtGKTlla+ava++++ +f+++sg+el++ky+ge+++ +relf  a+e a psi+f+DEid+++++r   s++ ++e +r++ +Ll++ldg++  ++ + vi+atnr+d ld allr gR+drkie++
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAA-PSIIFMDEIDSIGSTRvegSEGGDSEVQRTMLELLNQLDGFEPTQN-IKVIMATNRIDILDAALLRpGRIDRKIEFP 285
                 79******************************************************9.*****************9888899999****************755.****************************98 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.7e-09   8.4e-07       6     105 ..     153     246 ..     149     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.7e-09
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                 +ll gp g+Gkt+la+a+a + ++    ++ir+   el +    + + +     ++  v a e    i+++DEid i +++ +g++    +Vqr +L +l +
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTDC----TFIRVSGAELVQ----KYIGEGSRMVRELFVMAREAApsIIFMDEIDSIGSTRVEGSEGGDSEVQRTMLELLNQ 246
                 5789*******************8....************....77777788888888888888888*************9999999999********9964 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   3.3e-09   1.7e-06       1     135 [.     152     272 ..     152     275 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 3.3e-09
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG--.-HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEverae.sevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspal 135
                 +vlL GppGtgK+ la+ +a+ + +++  v +      ++l++++   +++ ++v   +v  ar   ++i+++DE++ +  + v +s     e +r  l+ +++l +++++    +n+ vi+++n+ d     l++al
  MMETSP0890-20130614|1523_1 152 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG------AELVQKYI--GEGSRMVRELFV-MAReaAPSIIFMDEIDSIGsTRVEGSEGGDSEVQRTMLELLNQLDGFEPT----QNIKVIMATNRID----ILDAAL 272
                 59***********************9998876......56999999..444455555555.33335899*********997888888888889999999999999999996....4999999999988....555555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.7e-07   0.00029       6      43 ..     152     181 ..     147     269 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.7e-07
   PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfv 43 
                  ++++G++G+GKT+l+r +a+          ++++++v
  MMETSP0890-20130614|1523_1 152 GVLLYGPPGTGKTLLARAVAHHT--------DCTFIRV 181
                 589******************66........4444444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     5e-08   2.5e-05      12      48 ..     141     175 ..     119     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5e-08
   PF13191.1  12 LlaalrrvsegsplllvtGpsGiGKSsLlrelakpil 48 
                 L +al  v+++   +l++Gp+G+GK+ L+r++a++  
  MMETSP0890-20130614|1523_1 141 LFDALG-VAQPK-GVLLYGPPGTGKTLLARAVAHHTD 175
                 456666.55555.9*****************666544 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.7e-07   0.00014      52     113 ..     152     221 ..     127     228 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.7e-07
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgPvl.eka.gdlaalltnl......eekdvlfideihrl 113
                  vllyGpPG Gkt la+ +a+  + ++   sg  l +k  g+ + ++ +l      ++  ++f+dei  +
  MMETSP0890-20130614|1523_1 152 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELvQKYiGEGSRMVRELfvmareAAPSIIFMDEIDSI 221
                 59**********************9876666655415433333333322211111134468888888765 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.2e-07   0.00016       2      33 ..     153     186 ..     153     304 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.2e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..l 33 
                 ++++GppG+GK+ la+++a + ++  +  +   l
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGaeL 186
                 789********************99887666333 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.6e-07   0.00018       7      35 ..     148     174 ..     143     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.6e-07
   PF13245.1   7 lagnpllvvtGgPGtGKTttlaaiiaall 35 
                 +++ + +++ G+PGtGKT +la+++a++ 
  MMETSP0890-20130614|1523_1 148 AQPKG-VLLYGPPGTGKT-LLARAVAHHT 174
                 44344.556*********.9999999975 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-06    0.0008      44      70 ..     147     173 ..     140     187 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.6e-06
  PF01695.12  44 veqaenlvllGpsGvGKthlAialgve 70 
                 v+q + ++l Gp+G+GKt lA a++++
  MMETSP0890-20130614|1523_1 147 VAQPKGVLLYGPPGTGKTLLARAVAHH 173
                 567789*****************9986 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.3e-06    0.0027       2      38 ..     153     191 ..     153     252 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.3e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlf 38 
                 vll G+pG+GK+ la++++ +++  ++r+s  +l ++  
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTDctFIRVSGAELVQKYI 191
                 7899*************9866665577887777665555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.9e-06    0.0045       3      73 ..     151     221 ..     149     277 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.9e-06
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev 73 
                 k ++++Gp ++GKt l++ +a++      ++ ++  +   + + + +  + elf+   +   +++f+DEi  +
  MMETSP0890-20130614|1523_1 151 KGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGAELVQKYIGEGSrmVRELFVMAREAAPSIIFMDEIDSI 221
                 6689*************99997766..7777777777444443333355566666655557899******987 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-05    0.0072      14      53 ..     148     186 ..     139     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-05
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                 ++pk vll G+pG GKt la+++   + +  ++r+++ el
  MMETSP0890-20130614|1523_1 148 AQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGAEL 186
                 79*********************9998.888888877665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-05    0.0062       2      38 ..     153     194 ..     152     214 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.2e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar....gypvv.pEvarevleek 38 
                 + + G+p+tGKT l++a+a +     ++v  +E + +++ e+
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHtdctFIRVSgAELVQKYIGEG 194
                 6799***************99855433344666666665554 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05    0.0058      51      90 ..     151     188 ..     107     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++vLl GppgtGkt la a+++   +d  f+ +sg+e+  
  MMETSP0890-20130614|1523_1 151 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGAELVQ 188
                 89*******************97..579999999999865 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.3e-05     0.042      21      60 ..     149     185 ..     140     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.3e-05
                 S-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTT CS
  PF00158.21  21 tdltvlitGesGtGKellAraiheaskrkkkpfvavncaa 60 
                 ++  vl+ G  GtGK+llAra+ +++   +  f++v  a+
  MMETSP0890-20130614|1523_1 149 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGAE 185
                 55679***************996544...34566665555 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00014     0.069      19      41 ..     150     172 ..     139     177 .. 0.83
   2 ?    1.3   0.0       0.3   1.5e+02      75     114 ..     235     274 ..     207     282 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00014
  PF02562.11  19 ndivfaiGpaGtGKTylavalav 41 
                  + v++ Gp GtGKT+la a+a 
  MMETSP0890-20130614|1523_1 150 PKGVLLYGPPGTGKTLLARAVAH 172
                 5668999***********99985 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.3
  PF02562.11  75 kvdpylrplydaLkdllgaekvekllekgkievaplafmR 114
                  v+  +  l ++L+ +  +++++ ++ +++i++++ a +R
  MMETSP0890-20130614|1523_1 235 EVQRTMLELLNQLDGFEPTQNIKVIMATNRIDILDAALLR 274
                 56667778889999999999****************9999 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-05      0.01       2      31 ..     153     182 ..     152     218 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG++ktll++a+a++ d++f r+ 
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTDCTFIRVS 182
                 8999***********************995 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-05     0.013      24      42 ..     152     170 ..     143     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.5e-05
  PF01078.16  24 nlllvGppGsGKtmlakrl 42 
                  +ll+GppG+GKt+la+++
  MMETSP0890-20130614|1523_1 152 GVLLYGPPGTGKTLLARAV 170
                 68**************987 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       5.2   2.6e+03      22      50 ..      30      77 ..      23      95 .. 0.65
   2 !   14.4   0.0   6.1e-05     0.031       1      23 [.     153     192 ..     153     270 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 5.2
   PF13238.1 22 l...................gdvlrdlakengleeevddkidtkeske 50
                l                    +vl ++++e  ++ e+d+ i+ +++k 
  MMETSP0890-20130614|1523_1 30 LhelqepgsfvgeivkpmsqTKVLVKVNPEGKYVVELDKSINIDDCKP 77
                444445555555555555666777788888888888888777776665 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.1e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.................g 23 
                 +l+ G+pG+GKt la++ a ++                 g
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTdctfirvsgaelvqkyiG 192
                 6899**************9987777776665544444440 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.1e-05     0.026       1      72 [.     153     216 ..     153     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.1e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenps.dlae 72 
                 ++lyGp+g+GK++la+            +++d +++r +  + +++Y g+   ++ ++  +  e+ ps ++++
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARA---------VAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAAPSiIFMD 216
                 689**************.........34555677778888888888888888888887777766666655544 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.6e-05     0.049      34      57 ..     152     174 ..     133     201 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.6e-05
   PF13481.1  34 sltllaGapgtGKStlalqlaaav 57 
                 + +ll+G+pgtGK+ la + a + 
  MMETSP0890-20130614|1523_1 152 G-VLLYGPPGTGKTLLARAVAHHT 174
                 4.79*************9999886 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.7e-05     0.034       6      23 ..     153     170 ..     149     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.7e-05
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 vl+YG+pG+GKT la+ +
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAV 170
                 89***********99865 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001     0.051      53     115 ..     150     217 ..     101     223 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0001
   PF05673.8  53 annvLLwGarGtGKSslvkallneyaeegLrl..ievekedlkdlpkivellr...erperfilfvDD 115
                  + vLL+G  GtGK  l +a+ +++  + +r+   e+ ++ + + +++v++l    +++   i+f+D 
  MMETSP0890-20130614|1523_1 150 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVsgAELVQKYIGEGSRMVRELFvmaREAAPSIIFMDE 217
                 4679*********************9999988445888888888888887764222556667888886 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011     0.056     117     139 ..     153     175 ..     148     179 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
  PF01057.12 117 vwfyGpantGktnlaeaIakavp 139
                 v++yGp+ tGkt la+a a+ ++
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAHHTD 175
                 899****************9876 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.12      14      37 ..     145     168 ..     121     174 .. 0.85
   2 ?   -2.8   0.0       4.6   2.3e+03     121     148 ..     218     249 ..     196     256 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
   PF06745.8  14 gGipegrvvlitGepGtGKtifal 37 
                  G+ + + vl++G pGtGKt++a 
  MMETSP0890-20130614|1523_1 145 LGVAQPKGVLLYGPPGTGKTLLAR 168
                 48889999*************985 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.6
   PF06745.8 121 iDsitgl....yeekeavaReilrqlvrvlkk 148
                 iDsi++      e  ++++ +++ +l+++l +
  MMETSP0890-20130614|1523_1 218 IDSIGSTrvegSEGGDSEVQRTMLELLNQLDG 249
                 56666655444444555666666666666655 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00096      0.49       3      22 ..     153     172 ..     151     177 .. 0.90
   2 ?   -0.9   0.0       1.9   9.4e+02      67     116 ..     196     246 ..     180     266 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00096
   PF05729.7   3 vilqGeaGsGKTtLlqklas 22 
                 v+l G++G GKT L++ +a+
  MMETSP0890-20130614|1523_1 153 VLLYGPPGTGKTLLARAVAH 172
                 799*************9986 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.9
   PF05729.7  67 apvsevwivllelperlLlilDglDelvsdlgq..lkekqpvrtlLselirk 116
                 + v+e + v+++ +    +++D +D + s   +    + ++v++ + el+++
  MMETSP0890-20130614|1523_1 196 RMVRE-LFVMAREAAPSIIFMDEIDSIGSTRVEgsEGGDSEVQRTMLELLNQ 246
                 45555.4455555566667789999988866666545566677777777664 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00064      0.32      35      61 ..       9      35 ..       3      37 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00064
                XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02185.11 35 lqeaesklreseqkielLkeqLeklqk 61
                lq+ +++++e++  + lL+e+L +lq+
  MMETSP0890-20130614|1523_1  9 LQRLTAQRNELNGQVRLLREELHELQE 35
                799**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        94  (0.00687537); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.66u 0.54s 00:00:01.20 Elapsed: 00:00:00.69
# Mc/sec: 1291.95
//
Query:       MMETSP0890-20130614|1524_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 679.62
//
Query:       MMETSP0890-20130614|1528_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-12   44.3   1.2    1.9e-11   43.2   0.2    1.9  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.043   13.1   0.1      0.043   13.1   0.0    1.1  1  PF13360.1  PQQ-like domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.2   2.8e-15   1.9e-11       1      39 []       8      46 ..       8      46 .. 0.97
   2 ?   -0.4   0.0      0.16   1.1e+03      15      22 ..      63      70 ..      50      72 .. 0.71

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 2.8e-15
                TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                g++k+tl gH+++V + +fs dg++++s+S D+t r+Wd
  MMETSP0890-20130614|1528_1  8 GQLKRTLAGHQDSVKSSCFSADGNRVVSASGDKTTRIWD 46
                6799**********************************9 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.16
                EEEEEESS CS
  PF00400.27 15 tcvafspd 22
                ++++f p+
  MMETSP0890-20130614|1528_1 63 SSCDFTPH 70
                57777775 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.4e-06     0.043      32      66 ..      27      60 ..       2      68 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.4e-06
   PF13360.1 32 avldggtlfvasakgrlvaldaatGkvlWsksleg 66
                   dg+++++as++ +   +d+++Gkvl ++++++
  MMETSP0890-20130614|1528_1 27 SA-DGNRVVSASGDKTTRIWDTQSGKVLSEFRFNS 60
                45.9***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 273.33
//
Query:       MMETSP0890-20130614|1526_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 782.14
//
Query:       MMETSP0890-20130614|1525_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-74  248.3   0.0    1.5e-73  247.0   0.0    1.6  2  PF00069.20 Protein kinase domain
    2.9e-37  128.0   0.0    5.1e-37  127.2   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    3.5e-23   78.9   1.8    1.6e-05   23.7   0.0    4.7  4  PF00036.27 EF hand
    4.2e-20   71.5   6.0    1.3e-11   44.3   0.3    3.2  2  PF13499.1  EF-hand domain pair
    1.1e-16   59.0   3.9    2.4e-06   26.8   0.1    4.7  4  PF13405.1  EF-hand domain
    3.2e-13   48.2   2.6    0.00015   20.8   0.0    4.5  4  PF13202.1  EF hand
    1.4e-11   43.7   1.2      0.009   15.4   0.0    4.0  4  PF13833.1  EF-hand domain pair
    3.1e-06   26.2   0.0    8.1e-06   24.9   0.0    1.7  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00019   21.1   0.4     0.0024   17.5   0.0    2.7  3  PF01636.18 Phosphotransferase enzyme family
    0.00025   20.9   1.0      0.037   13.9   0.1    3.3  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
    0.00061   19.0   0.0     0.0015   17.7   0.0    1.6  1  PF10707.4  PhoP regulatory network protein YrbL
  ------ inclusion threshold ------
      0.026   13.9   0.5       0.12   11.8   0.1    2.2  2  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0   0.0   1.3e-76   1.5e-73       4     260 .]      78     340 ..      76     340 .. 0.95
   2 ?   -2.4   0.0       1.6   1.8e+03      69     105 ..     456     504 ..     431     506 .. 0.52

  Alignments for each domain:
  == domain 1    score: 247.0 bits;  conditional E-value: 1.3e-76
                 EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.....HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEE.....CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.....kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakkl.....eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  ++lG+G +G+V ++++kk+g k+AvK ++k + ++ +    ++E++i+ +++Hpni+k++e++ ek++l++v+e++ gg+lf+ +      +e+++se+++ k+++qil +++y+H+ +i+HrDLKpeN+L++++ +    k++DFGl k       ++s+  ++t+vgt++Y+APEvl+  ++yt+k+DvWs+Gvi y ll+g +pf+g+   +++ +++++  +k ++++p++++ s+ +kd++  ll+ d ++R++a+e+l+h wl
  MMETSP0890-20130614|1525_1  78 TKILGEGHYGTVRSCTRKKDGLKFAVKSINKARVSKPQM--LTSEIEIMLRVDHPNIIKVIEIYDEKEYLHIVTELCTGGELFERIIeksqsSEKSFSERDAAKVLRQILDAVAYMHDLNIVHRDLKPENFLFNSNMDDavlKVIDFGLGKLNsqdaeNSSNILMHTRVGTPYYIAPEVLR--RDYTSKCDVWSVGVIAYILLCGYPPFYGD---NDRDIFRRVSAGKFQFPSPEWDHISRPAKDFVAALLRVDIDRRPSAREALEHHWL 340
                 579****************************99988664..668***************************************877779999999***************************************87765667********97799987778889*****************..*****************************...9****************************************************96 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.6
                 ESTEEEEEEE--SC-........EHHHHHH.........HHCCB-HHHHHHHHH CS
  PF00069.20  69 ekdelylvleyvegg........dlfdllk.........kegklseeeikkial 105
                 ++++l ++ +++++         d               +   l+ee++kk++ 
  MMETSP0890-20130614|1525_1 456 DDEHLSMIHQLMQAIdlsgdqkiD-----YpeflaatmqRTAYLKEENMKKVFA 504
                 366666777776666333333331.....0222223333455556666666665 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   4.5e-40   5.1e-37       5     254 ..      79     333 ..      76     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 127.2 bits;  conditional E-value: 4.5e-40
                 EEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT...GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCE...EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---T..TSBHHHHHHHHHHT-SSGGGS--HHH CS
  PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk...ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyy...kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpe..kcpeelyelmkqCweeepeeRptfke 254
                 k lGeG++G+V ++t k    k+ +k avK++++ a+ ++ +++ +e++im +++hpni+k++ ++ ++e l ivte+++gG+L e + +k   ++++++ +d  k+  qi ++++y+++ ++vHrdL   N L ++   + v k+ DfGL +   +d +      ++++     ++apE+l+ + +tsk DvWs Gv+ + +++ g  p+ g +++++++++   + + + pe  ++++  ++++   ++ + ++Rp+ +e
  MMETSP0890-20130614|1525_1  79 KILGEGHYGTVRSCTRK----KDGLKFAVKSINK-ARVSKPQMLTSEIEIMLRVDHPNIIKVIEIYDEKEYLHIVTELCTGGELFERIIEKsqsSEKSFSERDAAKVLRQILDAVAYMHDLNIVHRDLKPENFLFNSnmdDAVLKVIDFGLGKLNSQDAENssnILMHTRVGTPYYIAPEVLR-RDYTSKCDVWSVGVIAYILLC-GYPPFYGDNDRDIFRRVsAGKFQFPSPEwdHISRPAKDFVAALLRVDIDRRPSARE 333
                 78*************99....999********55.555559*******************************************9998877677789999************************************9554569********99885444442324445555666789***987.579**************8887.99***************444556777653377888888899999999999988766 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.4e-08   1.6e-05       2      27 ..     418     443 ..     417     445 .. 0.90
   2 !   13.3   0.0     3e-05     0.035       2      25 ..     463     486 ..     462     489 .. 0.90
   3 !   14.6   0.1   1.2e-05     0.013       2      25 ..     499     522 ..     498     525 .. 0.90
   4 !   23.0   0.1   2.4e-08   2.7e-05       5      28 ..     532     555 ..     529     556 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                 l  +F+++DkDgdG+I+  E+ +al+
  MMETSP0890-20130614|1525_1 418 LHSVFRKIDKDGDGHITTTELHDALH 443
                 5679******************9997 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3e-05
                 HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkea 25 
                 + ++++ +D  gd kI++ Ef++a
  MMETSP0890-20130614|1525_1 463 IHQLMQAIDLSGDQKIDYPEFLAA 486
                 6789*****************987 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkea 25 
                 +k++F+ +D D++G+++f+ ++++
  MMETSP0890-20130614|1525_1 499 MKKVFAQLDLDKTGFVTFQNLIDI 522
                 689****************99876 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 2.4e-08
                 HHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfkealkk 28 
                 + +e+D+++d kIs++Efk+++++
  MMETSP0890-20130614|1525_1 532 LLEEADVNNDRKISYQEFKDIMTS 555
                 6789******************86 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.3   1.1e-14   1.3e-11       2      65 ..     418     486 ..     398     487 .. 0.94
   2 !   28.2   0.5   1.2e-09   1.4e-06       2      66 .]     499     553 ..     493     553 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 1.1e-14
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels.....deevrevldyifkelDkngdGvlsfeEflqa 65 
                 l+ +F+++Dkdgdg+++ +eL  +l  ++         d+e   ++ ++++ +D+ gd +++++Efl+a
  MMETSP0890-20130614|1525_1 418 LHSVFRKIDKDGDGHITTTELHDALHDHLGFSDqsnpqDDEHLSMIHQLMQAIDLSGDQKIDYPEFLAA 486
                 6789**********************999888899***999999**********************987 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 1.2e-09
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 +k++F +lD d++g+++ + L  ++           +++ + ++++e+D n+d+++s++Ef  ++
  MMETSP0890-20130614|1525_1 499 MKKVFAQLDLDKTGFVTFQNLIDITG----------SKKHAADLLEEADVNNDRKISYQEFKDIM 553
                 4568**************99999973..........45677888*****************9987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   2.1e-09   2.4e-06       2      28 ..     418     444 ..     417     449 .. 0.91
   2 ?    5.2   0.0     0.018        21       4      25 ..     465     486 ..     462     492 .. 0.85
   3 !   15.0   0.1   1.3e-05     0.015       2      25 ..     499     522 ..     498     525 .. 0.92
   4 !    9.5   0.0   0.00073      0.83       9      27 ..     536     554 ..     530     556 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.1e-09
                 HH---GCC-------B---HHHHHHH. CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                 l+++F+++DkdgdG i+  EL daL++
  MMETSP0890-20130614|1525_1 418 LHSVFRKIDKDGDGHITTTELHDALHD 444
                 789**********************85 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.018
                 ---GCC-------B---HHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrda 25 
                 ++ +++D  gd kid  E+++a
  MMETSP0890-20130614|1525_1 465 QLMQAIDLSGDQKIDYPEFLAA 486
                 566789*************876 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.3e-05
                 HH---GCC-------B---HHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrda 25 
                 ++++F ++D d++G+++++ L+d+
  MMETSP0890-20130614|1525_1 499 MKKVFAQLDLDKTGFVTFQNLIDI 522
                 89*****************99986 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00073
                 C-------B---HHHHHHH CS
   PF13405.1   9 fDkdgdGkidaeELrdaLr 27 
                  D ++d ki+ +E++d+++
  MMETSP0890-20130614|1525_1 536 ADVNNDRKISYQEFKDIMT 554
                 69***************98 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00015       3      21 ..     420     438 ..     418     443 .. 0.88
   2 ?    1.4   0.0      0.17     2e+02       4      21 ..     466     483 ..     463     488 .. 0.84
   3 !   13.9   0.1     2e-05     0.023       1      21 [.     499     519 ..     499     522 .. 0.92
   4 !    8.2   0.1    0.0013       1.4       3      23 ..     531     551 ..     530     553 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.3e-07
                 HHHHHH--S----B-HHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                 ++Fr++D++gDG I+  EL
  MMETSP0890-20130614|1525_1 420 SVFRKIDKDGDGHITTTEL 438
                 68*************9999 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.17
                 HHHHH--S----B-HHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                 + +a+Dl gD kI+  E+
  MMETSP0890-20130614|1525_1 466 LMQAIDLSGDQKIDYPEF 483
                 679*******99999998 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 2e-05
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 +k++F ++Dl++ G+++++ L
  MMETSP0890-20130614|1525_1 499 MKKVFAQLDLDKTGFVTFQNL 519
                 689***************987 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0013
                 HHHHHH--S----B-HHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkr 23 
                 d+++++D+N+D kIs +E+k 
  MMETSP0890-20130614|1525_1 531 DLLEEADVNNDRKISYQEFKD 551
                 57899**************96 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.9e-06     0.009      10      51 ..     398     442 ..     392     451 .. 0.80
   2 !   10.8   0.0   0.00022      0.25      27      50 ..     463     486 ..     459     490 .. 0.90
   3 ?    1.2   0.0      0.23   2.6e+02      21      44 ..     490     516 ..     484     520 .. 0.79
   4 !   13.5   0.1   3.3e-05     0.038       2      53 ..     511     555 ..     510     556 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.9e-06
   PF13833.1  10 Lkral.allglkg...lseee.vdilfrefDtdgdGkisfeEFcvll 51 
                 Lkr + + l  ++    se e ++ +fr++D dgdG i+  E +++l
  MMETSP0890-20130614|1525_1 398 LKRLAlNVL--SReltGSELEhLHSVFRKIDKDGDGHITTTELHDAL 442
                 566443333..34557899999*****************99988776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00022
   PF13833.1  27 vdilfrefDtdgdGkisfeEFcvl 50 
                 ++ l+ ++D+ gd ki++ EF+++
  MMETSP0890-20130614|1525_1 463 IHQLMQAIDLSGDQKIDYPEFLAA 486
                 6789*****************975 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.23
   PF13833.1  21 g...lseeevdilfrefDtdgdGkisf 44 
                 +   l+ee +  +f  +D+d+ G ++f
  MMETSP0890-20130614|1525_1 490 RtayLKEENMKKVFAQLDLDKTGFVTF 516
                 3456888889999********998887 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 3.3e-05
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                 +G +t+++L ++         s++ + +l+ e+D ++d kis+ EF++ +++
  MMETSP0890-20130614|1525_1 511 TGFVTFQNLIDIT-------GSKKHAADLLEEADVNNDRKISYQEFKDIMTS 555
                 7888999999944.......89999**********************98875 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.1e-09   8.1e-06     109     173 ..     165     230 ..     146     243 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 7.1e-09
   PF06293.9 109 lakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrlr 173
                  ++ ++ ++e+   ++l+++  ++a mh+ ++ H+dl + n+l++ + ++a + +iD+  +++ ++
  MMETSP0890-20130614|1525_1 165 SQSSEKsFSERDAAKVLRQILDAVAYMHDLNIVHRDLKPENFLFNSNMDDAVLKVIDFGLGKLNSQ 230
                 44444468999999********************************************88877774 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0024     144     194 ..     176     224 ..      84     228 .. 0.85
   2 ?   -1.4   0.1       1.2   1.4e+03     200     228 ..     312     340 ..     306     362 .. 0.73
   3 ?   -0.2   0.0      0.53     6e+02      63     120 ..     428     485 ..     365     510 .. 0.49

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE.TTTTEE.EE---TT CS
  PF01636.18 144 lleeleervlaalaallpgaeppvllHgDlhpgNllvd.pddgrv.gviDfed 194
                 +++++ +++l+a a + +      ++H+Dl+p N l++   d+ v  viDf++
  MMETSP0890-20130614|1525_1 176 DAAKVLRQILDAVAYMHD----LNIVHRDLKPENFLFNsNMDDAVlKVIDFGL 224
                 355566666666666666....9***************955556669****86 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
                 TCHHHHCCCTCHTCHHHHHHHHHHCHCHC CS
  PF01636.18 200 plyDlasllrrwreeldpellaallraye 228
                 p+ D++++l r++ +++p+ ++al + ++
  MMETSP0890-20130614|1525_1 312 PAKDFVAALLRVDIDRRPSAREALEHHWL 340
                 66677666656788888888888888776 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.53
                 -CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTB CS
  PF01636.18  63 dddvlgllfalleyvpgevlerklnarqlpallealaellaalhqadpaadpladfla 120
                 d+d++ + ++l++ ++ +     ++ +q+++ l  +++l+ a+   + ++   + fla
  MMETSP0890-20130614|1525_1 428 DGDGHITTTELHDALHDHLGFSDQSNPQDDEHLSMIHQLMQAIDLSGDQKIDYPEFLA 485
                 3333333333333333333333333444444444444444444333333333333333 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.018        21      54     111 ..     416     484 ..     376     486 .. 0.71
   2 !   13.9   0.1   3.2e-05     0.037      39     111 ..     482     550 ..     455     552 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.018
   PF10591.4  54 eaveWkFnqlDtnkdkvlsksElap.lrapl..........vklehCikeffksCDadkdkkisleEWc 111
                 e ++  F ++D++ d++++++El++ l+ +l           ++ + i++++++ D+  d+ki+  E+ 
  MMETSP0890-20130614|1525_1 416 EHLHSVFRKIDKDGDGHITTTELHDaLHDHLgfsdqsnpqdDEHLSMIHQLMQAIDLSGDQKIDYPEFL 484
                 566778999999999999999997426666666666655322233457788888888888888888875 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.2e-05
   PF10591.4  39 elekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                 e ++ + +++    +e+++  F+qlD +k ++++ + l +++ +    ++  + +++++D+++d+kis +E+ 
  MMETSP0890-20130614|1525_1 482 EFLAATMQRTAYLKEENMKKVFAQLDLDKTGFVTFQNLIDITGS----KKHAADLLEEADVNNDRKISYQEFK 550
                 555555666666667777888********************998....666899*****************96 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0015     119     184 ..     176     241 ..     155     247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.3e-06
   PF10707.4 119 ltaalaeaLeefleallenrIvardlkpknivvgrrsegeeelvlvD.GlGdkeliplaawskrlnr 184
                  +a++ +++ + + ++ +++Iv rdlkp+n++++ + ++   l ++D GlG+ +  ++ + s+ l +
  MMETSP0890-20130614|1525_1 176 DAAKVLRQILDAVAYMHDLNIVHRDLKPENFLFNSNMDDA-VLKVIDfGLGKLNSQDAENSSNILMH 241
                 44567777888899*************************9.9*****99999887777777766655 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1    0.0001      0.12     122     170 ..     171     223 ..     121     233 .. 0.75
   2 ?   -1.0   0.0      0.83   9.4e+02      64      98 ..     378     427 ..     370     511 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHTT----..EEEE-S------EEE------..-EE---T CS
  PF01633.15 122 ledlekeleeleklleekesp..vvfCHnDlqegNillnkeekk..lvlIDFE 170
                   + ++ ++ l+++l+   +   +++ H Dl ++N+l+n++ ++  l++IDF 
  MMETSP0890-20130614|1525_1 171 SFSERDAAKVLRQILDAVAYMhdLNIVHRDLKPENFLFNSNMDDavLKVIDFG 223
                 3344555666777776444444599*************77655433889**96 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.83
                 SHHHHHHHHHHHHHHTT---...............SS--SS-HHHHHHHH CS
  PF01633.15  64 epeilkkiakklaelHslel...............seskeskslwktiqk 98 
                 ++e l+++a++++++ ++                 se ++  s++++i+k
  MMETSP0890-20130614|1525_1 378 DKEKLAAVARRMRRFVRMTKlkrlalnvlsreltgSELEHLHSVFRKIDK 427
                 56666777777777766555555555555555555444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.91
# Mc/sec: 1466.78
//
Query:       MMETSP0890-20130614|1527_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-23   81.9   0.0    8.1e-23   80.9   0.0    1.4  2  PF00454.22 Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   5.9e-27   8.1e-23      23     202 ..      71     238 ..       5     265 .. 0.84
   2 ?   -3.7   0.1      0.42   5.7e+03      60      89 ..     310     343 ..     299     366 .. 0.50

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 5.9e-27
                 HHHHHHHHCTT---------B--SSS----EE--TTEEEHHHHHCH--------T.....................THHHHHHHHHSSSHHHHHHHHHHHHHHH---HHHHHH-------CCCEEE.....E----EEE------------SSSS--SS---H......HHHHH----...---SHHHHHHHH CS
  PF00454.22  23 rlfnkllsgegalrelaaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvklfelqkkkkpkvgslqlFlkeypdaeeflearsqfarslaklsvldyilgngDRhldNilv....dkktgklvhIDfGlclpskheekpelvpfrltr......pfseemrey...ldpskdeglfre 202
                  + +++  ge+ lre+a+Yl++  a             +la vp t+l++ ++ +fn+ +             k+kvgslq+F +++  ae+++ + +  ++++  ++ ld++  n+DR+++Nilv     k+++ l++ID+G+clp  +  + e  +++++       p+++e+r+    +dp++d  ++r+
  MMETSP0890-20130614|1527_1  71 AMRKGVRPGEAYLREVATYLLDCSAH------------GLAGVPETTLAESAHSKFNYFD----------RIIKEKVGSLQVFAQHDGVAEDYG-VDRLATTRIQAIAALDIRTLNCDRNPSNILVrripGKESLDLIPIDHGYCLP--NILDIEWFDWCWLDwpqcasPLDDELRDTilaMDPIADVFKLRD 238
                 778889999*************9999............*******************733..........34588*******************.********************************9999****************..888888888888889*****999999999977777777766666 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.42
                 EEHHHHHCH--------T................ CS
  PF00454.22  60 ltlaevprtdlvkkesknfndkrkkkvkl....f 89 
                  +la +   d+ ++++ +   +++ ++ +     
  MMETSP0890-20130614|1527_1 310 HELAVLALRDHRWRAHSTSTRNDTSNDAMnknpS 343
                 5555555555555555554444444444432331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       757  (0.0553686); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.77
# Mc/sec: 1574.75
//
Query:       MMETSP0890-20130614|1530_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.86
# Mc/sec: 721.69
//
Query:       MMETSP0890-20130614|1532_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-05   20.5   0.0     0.0014   16.5   0.0    2.6  2  PF00012.15 Hsp70 protein
    0.00026   19.5   0.0       0.82    8.0   0.0    3.0  3  PF06723.8  MreB/Mbl protein
  ------ inclusion threshold ------
      0.094   10.3   0.0       0.15    9.7   0.0    1.2  1  PF05059.7  Orbivirus VP4 core protein


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     3e-07    0.0014       3     237 ..     135     385 ..     133     417 .. 0.69
   2 ?   -1.3   0.0     0.073   3.3e+02     306     353 ..     482     529 ..     461     532 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3e-07
                 XEEXXXXEEBXEEEXXXXEEEXXX.TTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS......XXEE..EEEEXTTXXHHHHHHHHHHHHHXXX.......EEEEEEEHHHHHHHHXXXTTSX...........XEEEEEEEEXXXXEEEEEEEEEX....XEEEEEEEEEETTXXXXHHHHHHHHHHH CS
  PF00012.15   3 GiDLGttnsvvavmeggkvevian.eegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgek.....vtda..vitvPaYFndaqRqatkdAgkiAGL.......nvlRivneptaaalaYGldkkd..........kernvlvfDlGggtfdvSileied....GvfevkatagDthlGGedfDealvehlv 237
                  iD Gt ns +a   g++ ++++n ++++r t  +v  +      +Ge+A ++a  +p+  vf+  +l     +d+  +++ik +    +++         ++l   ++++  e+ + vLk lke+  +y+ +       +++  v+tvP  + +  +  + +A+  AGL         l i  ep aa + Y   ++           ++r  +v+D Gggtfdv +++++      + ev+  ag    G  + De+l+++l+
  MMETSP0890-20130614|1532_1 135 AIDFGTSNSGIAYSVGQGFNTVNNrAYAKRPTKLCVDMSTLsLVCMGEDAYKRAEDDPAYAVFERFKLSLN--EDNGGATQIKGWFAYPNAS---------KHLR--QTLSVFELITLVLKVLKEELVEYVARFnstrsAENCtwVLTVPICWGEPAKDVMEQAAISAGLvrketlpYNLVIALEPEAALIGYFHREEAgmtswghlneQHRRFMVVDNGGGTFDVCVVKVNSlnpfSISEVVQGAGG-PWGATKVDEELLNFLR 385
                 59999999999999999999999844789999999999887678899999999999999999875555433..4544555555553333333.........1222..256666666667776666644444321111224444449***********************944422221355778*********6555558888889999999******************996222234555555553.4666777777777665 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.073
                 HHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX CS
  PF00012.15 306 dllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg 353
                 ++l ++l+ ++  l+    + e + ++vl GG +    +q ++++lf+
  MMETSP0890-20130614|1532_1 482 KVLLQILSGLKVELSACAQHGEHVTDIVLAGGFSESAYLQATIQRLFQ 529
                 55666677777778888888999**********999999999999985 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.11   4.9e+02       5      47 ..     135     185 ..     132     188 .. 0.65
   2 !    8.0   0.0   0.00018      0.82     145     189 ..     333     385 ..     241     395 .. 0.77
   3 !    7.7   0.0   0.00023         1     232     324 ..     466     558 ..     457     561 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.11
                 --B----EEEE.-------..-.....EEEES-EEEEST---EEE---TTC CS
   PF06723.8   5 giDLGtantlv.yvkgkgi..v.....lnepsvvAikkktkkvlavGeeAk 47 
                 +iD Gt n  + y  g+g   v      + p+ + ++++t +++ +Ge+A+
  MMETSP0890-20130614|1532_1 135 AIDFGTSNSGIaYSVGQGFntVnnrayAKRPTKLCVDMSTLSLVCMGEDAY 185
                 89****998554999998522211111345666777777777778887776 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00018
                 ---EEEE-----EEEEEE...----EEEEEEES---.....-HHHHHHHHHHH CS
   PF06723.8 145 sgnmvvdiGggttevavi...slggivtsksvrvaG.....deldeaiikyir 189
                 +  mvvd Gggt +v v+   sl+   +s+ v+ aG      ++de++++++r
  MMETSP0890-20130614|1532_1 333 RRFMVVDNGGGTFDVCVVkvnSLNPFSISEVVQGAGgpwgaTKVDEELLNFLR 385
                 456*************9944444455667777766633333577888888777 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00023
                 ---EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE--...-------HHHHHHH-----EE-SSTTTTTT-----TTC-HHH CS
   PF06723.8 232 pkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGG...gallkgldkllseetglpvkvaedpltcvakGtgkvleklkk 324
                  k++++  + v+    +++ +i++ +k  L +++      +    ivl+GG   +a l+   + l + tg+   + + p +c+ +G+ k+ ++ ++
  MMETSP0890-20130614|1532_1 466 SKRLTIPVTYVKAFFDKVLLQILSGLKVELSACAQH-GEHV--TDIVLAGGfseSAYLQATIQRLFQGTGVLFDIPDTPGMCILQGAVKYGKNPQM 558
                 567777777788888888888888888888888643.2223..3478999955567788888888999*******************999888765 PP

>> PF05059.7  Orbivirus VP4 core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   3.2e-05      0.15      87     202 ..      40     154 ..      22     169 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.2e-05
   PF05059.7  87 dvvipkevlkekdskeletkiGkkrvklrkkfGdalrkyalkfaielhGseaetlmvadpkrhkvkGkpeapPaleipaellpysddeptdekLvslldylvysadevyyvGcGdl 202
                  + i++++  +++    +++iG++  +l  ++ d++ +y++ + +++ G + +  m+++++   +  +   pP++   a+++p++d   t+  +v+ +d+ + ++  +y vG G  
  MMETSP0890-20130614|1532_1  40 AIPIQQQMIGQQTLPIQQQMIGQQ-PYLSVNYKDQMGNYSIPSQHMIYGQQNQETMMMQASGQMLPSQQVVPPQVLNGATTIPQKDLIATESEFVAAIDFGTSNSGIAYSVGQGFN 154
                 456677777777777777788865.589999******************98877777788889999**********************************************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.78
# Mc/sec: 2212.02
//
Query:       MMETSP0890-20130614|1544_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 178.83
//
Query:       MMETSP0890-20130614|1531_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:01.19
# Mc/sec: 316.16
//
Query:       MMETSP0890-20130614|1546_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:01.22
# Mc/sec: 1781.55
//
Query:       MMETSP0890-20130614|1548_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-34  117.1   0.0    7.8e-34  116.4   0.0    1.4  1  PF00174.14 Oxidoreductase molybdopterin binding domain
    1.5e-15   56.6   0.1    3.1e-15   55.6   0.1    1.6  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain
    3.3e-15   55.7   0.0    1.8e-12   46.9   0.1    2.5  2  PF03404.11 Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> PF00174.14  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0   1.7e-37   7.8e-34       2     168 ..     214     412 ..     213     413 .. 0.82

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 1.7e-37
  PF00174.14   2 nhgavpevddeekwklev...................dGlverplslsledLk.klpaeevtatlqCvgnrre...............glqwsagaignakWtGvpLadvLkeaglk..pearhvvfegadeeeeeksgyaesiplekald..edvlLAyemngepLppdhGaPlRlvvpglygaksvKwlkrIevtdeesegywe 168
                 nhg+vp   ++++ ++e+                   + + ++ + l+l++L+ k+ ++++ta lqC g r +                 + ++g++gn+ W+G+pLa vL++   +   e++++ f+gad       +y +sipl+ ald  +d+lL++++n++pLppdhGaPlR+++pg +ga+svKwl+rI + ++e  ++w+
  MMETSP0890-20130614|1548_1 214 NHGPVPTSLKADNISFEIstskneappgtkgaidtadTQNTQNIAHLNLSELQaKFGTKKITAVLQCGGSRARedlavngvsgfagtnYESITNGMLGNGLWEGIPLAPVLHDLLNDvnVENKFIEFHGAD-------EYFSSIPLAYALDpaNDCLLVTKLNDQPLPPDHGAPLRIIIPGNIGARSVKWLQRIVIRNDEGLSPWN 412
                 5666653334455555555555555555544444333336677889************************7779***********88767788899***********998887765411446*********.......9************999*********************************************9999996 PP

>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   6.9e-19   3.1e-15       2      75 ..      82     157 ..      81     158 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 6.9e-19
                 BEHHHHHTCECTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHH...HHHHHH..HHHHHHHHGCGBE--B CS
  PF00173.23   2 ftleevskhnkekdswvvirgkVYDvskflkdhpggasailafaGkDaTeaf...enashs..eaaekllekyyrvGrl 75 
                 ft e+vs h++++++wv +++ VYDv+kfl++hpgg++++l++aG  ++  +      +h     + ++le+ yr+G+l
  MMETSP0890-20130614|1548_1  82 FTSEQVSAHDNKDSIWVTYKDGVYDVTKFLDQHPGGKRFLLSAAGGAVDGMWqfwH--FHHtsPLVPRYLEQ-YRIGTL 157
                 99************************************************996433..44445999999999.****98 PP

>> PF03404.11  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   3.9e-16   1.8e-12      26      85 ..     449     508 ..     430     515 .. 0.83
   2 !    6.0   0.0    0.0017       7.7      93     129 ..     562     597 ..     550     598 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 3.9e-16
                 .--EEEE-EEE------EEEEEEE-------EE-EEES---T---..-TTS-BEEEEEE- CS
  PF03404.11  26 eetytvkGyAysgggrritrvevslDkGksWklaeleyeedkyregessfcwcfwsldvd 85 
                 ++++   G+Aysg g+ i+rve+s+D GksW++a+++  e  + + ++s+ w  w   ++
  MMETSP0890-20130614|1548_1 449 DNNIFATGIAYSGKGHDIDRVEISIDFGKSWHQAKIRTDEILQDDAHKSWHWIRWYSMIP 508
                 3578899*********************************99988889*******87766 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0017
                 EEEEEEEEETT--B--SHHHHHH-------SEEEEEE CS
  PF03404.11  93 keilvrAvDeslnvqPedmiwnvlgmmnnawfrvkik 129
                  ++++rA    +++qP ++i+   g++ n ++rv i+
  MMETSP0890-20130614|1548_1 562 PQVWCRASTIHGETQPPESIR-RGGYNFNGYHRVYIE 597
                 579**************7775.589*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:01.77
# Mc/sec: 827.22
//
Query:       MMETSP0890-20130614|1552_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-33  113.8   0.0    8.9e-33  113.6   0.0    1.1  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00039   19.3   0.1    0.00089   18.1   0.1    1.6  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   1.3e-36   8.9e-33     114     280 ..       7     184 ..       3     273 .. 0.71

  Alignments for each domain:
  == domain 1    score: 113.6 bits;  conditional E-value: 1.3e-36
  PF01041.12 114 tkaIlpVhlyGqpadmdairaiaaehglkvieDaAqAlGatykGkkvGtlgdaatfSffptKnlttgeGGavvtdDpelaerar............alrnhGlkrkaeeryreevs...lGynlrltelqAavglaqLekldeliarrreiaelykeelaelpgleelteptees....eaawhlf 280
                  k  ++ h+ G++admd++++i+++h++ ++eD+A++lG  ykG ++G +g++a+fS + +K+l +geGG+++tdD+    +a             +l++ + +       r  ++   + + lr+ e  Aa+++ q++ +d+++a+ +  +    ++l++lp + +++++ ++     +++   f
  MMETSP0890-20130614|1552_1   7 AKYFIISHMRGKIADMDKVEEICDKHNVLLLEDCAHSLGVLYKGAHTGHHGKIASFSSQSYKMLNSGEGGFFCTDDDIAFAQAMayagayealadkHLCKPSED-----ALRLVMDgsiPNFSLRMHEATAAMLRPQIKTIDARRAQYNHRYYDVARRLNKLPRV-TVPKQLDTVtivgDSVQ--F 184
                 5667889*********************************************************************9877777657887776555555555533.....22222225569**********************99999988888889999999977.44444444336543222..2 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.3e-07   0.00089     157     295 ..      12     163 ..      11     186 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-07
                 S-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-........................HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC CS
  PF00155.16 157 phNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna........................avvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael 295
                 ++++ G++a+ +++e++   ++k+n+ll+ D a++ +v+ +  a   + +   +++    +s s  +   G   G+++ ++                           ++lr +  + +   s  + +a+aa+l+ + +    ++++r+++++r   +  +L++l
  MMETSP0890-20130614|1552_1  12 ISHMRGKIADMDKVEEI---CDKHNVLLLEDCAHSLGVLYKG-A---HTGHHGKIA--SFSSQSYKMLNSG-EGGFFCTDDdiafaqamayagayealadkhlckPSEDALRLVMDGSIPnfSLRMHEATAAMLRPQIK---TIDARRAQYNHRYYDVARRLNKL 163
                 589**************...*****************99832.2...333333333..3333333332222.2255555444555555555555555556677776666666666666555588888888888888886...57888888888877777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.88
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|1562_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-24   82.3   3.6    3.4e-10   39.2   0.1    3.1  3  PF00400.27 WD domain, G-beta repeat
    0.00018   19.7   1.8      0.033   12.2   0.0    2.1  2  PF11715.3  Nucleoporin Nup120/160
     0.0018   17.9   0.0     0.0022   17.6   0.0    1.1  1  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.41    9.9   0.0    1.9  2  PF07443.8  HepA-related protein (HARP)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.1e-05      0.21      27      39 .]       1      13 [.       1      13 [. 0.96
   2 !   39.2   0.1     1e-13   3.4e-10       5      39 .]      20      54 ..      17      54 .. 0.95
   3 !   31.9   0.1   2.1e-11   7.3e-08       2      39 .]      59      96 ..      58      96 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.1e-05
                EEEETTSEEEEEE CS
  PF00400.27 27 asgSrDgtirlWd 39
                a+g +D+++r+W+
  MMETSP0890-20130614|1562_1  1 ATGAYDNKVRIWN 13
                8***********7 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 1e-13
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH+  V+++a+s+dg  l+s+S+D+t+rlW+
  MMETSP0890-20130614|1562_1 20 RELVGHKREVNSIAYSQDGITLVSASADHTCRLWN 54
                5799******************************7 PP

  == domain 3    score: 31.9 bits;  conditional E-value: 2.1e-11
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                + ++++rg t+++  v+fspdg+++a++++D+  r+W+
  MMETSP0890-20130614|1562_1 59 TELRIFRGATAGIMRVDFSPDGHCFATSGHDNINRIWH 96
                6799*********************************6 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2   0.00027      0.92     240     253 ..       6      19 ..       4      38 .. 0.78
   2 !   12.2   0.0   9.6e-06     0.033     231     256 ..      39      63 ..      22      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00027
   PF11715.3 240 DgkLRvWnletgqc 253
                 D+k+R+Wn++t  c
  MMETSP0890-20130614|1562_1   6 DNKVRIWNTDTSDC 19 
                 9***********99 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 9.6e-06
   PF11715.3 231 qtfvftlsrDgkLRvWnletgqclrt 256
                    +++ s+D++ R+Wn+++g+ lr 
  MMETSP0890-20130614|1562_1  39 I-TLVSASADHTCRLWNVANGTELRI 63 
                 3.3559***************99775 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.4e-07    0.0022      79     183 ..       3     103 ..       1     107 [. 0.81

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.4e-07
   PF08662.6  79 Gkmpakislfdlkvnviskl..kekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiakaeasna..tlvewspdgryvlTattsprlrvdngfkiws.ysGkll 183
                 G  ++k+++++ + +   +l  ++++ N+i +s+ g  ++ a    +     +++v + +++  ++ + a    v++spdg+ ++T+        dn  +iw+ +sG+ l
  MMETSP0890-20130614|1562_1   3 GAYDNKVRIWNTDTSDCRELvgHKREVNSIAYSQDGITLVSASADHT---CRLWNVANGTELRIFRGATAgiMRVDFSPDGHCFATSGH------DNINRIWHgFSGSRL 103
                 88899*******988888872245667***************98887...99*****9999999988887225789********99864......688888876677665 PP

>> PF07443.8  HepA-related protein (HARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00012      0.41      22      50 ..       4      32 ..       1      36 [. 0.88
   2 ?   -1.0   0.0      0.31   1.1e+03      20      31 ..      43      54 ..      40      56 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
   PF07443.8 22 sYDpkTkkWsFsleDYqkLmervaklpqV 50
                +YD k ++W+ + +D ++L  + ++++++
  MMETSP0890-20130614|1562_1  4 AYDNKVRIWNTDTSDCRELVGHKREVNSI 32
                7******************9998888766 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.31
   PF07443.8 20 sksYDpkTkkWs 31
                s s D + ++W+
  MMETSP0890-20130614|1562_1 43 SASADHTCRLWN 54
                55669999***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.91
# Mc/sec: 284.40
//
Query:       MMETSP0890-20130614|1560_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-50  169.2   0.1    9.5e-50  168.9   0.1    1.1  1  PF13714.1  Phosphoenolpyruvate phosphomutase
    2.7e-14   52.1   0.8      4e-14   51.5   0.5    1.1  1  PF00463.16 Isocitrate lyase family


Domain annotation for each model (and alignments):
>> PF13714.1  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.1   1.4e-53   9.5e-50       8     237 ..      54     299 ..      47     300 .. 0.90

  Alignments for each domain:
  == domain 1    score: 168.9 bits;  conditional E-value: 1.4e-53
   PF13714.1   8 geplvlpnawDalsariveeagfkalatsSlavaaslGvpDgelltleelleavrriaevvd..lPlivDledGygespedvaetvkrliaaGavGvniEDk....kdnr.aerqllsieefaekiaaaraaakeag.........fvinARtdalllagagleeaieRaraYaeAGAdgvfvpglkkeediaalvaavsvp..lnvvplpgt..lsveelaelGvarisvgnhllraalaalreaakei 237
                 g++ v+p+++D+l+a++ve++gf++ ++s+++v+as+G+pD +l++l e+l+  r+++++++  +Pli+D ++G g+ + +v++tv++++++G++Gv+iED+    ++++ ++r+ ++ +e++++i+aa++a++e           ++i ARtda +     l+eai+R+++++e GAd++f    ++ +++++ +a+v++p   n++ +++t  ls+++l+++G+++  +  +ll++a++a+++ ++++
  MMETSP0890-20130614|1560_1  54 GKLEVMPCCYDGLTAKLVEDTGFEVTFMSGYSVSASRGYPDVQLVSLGEMLDSGRTCVSSLRrgIPLIADGDTGHGN-AMNVKRTVHSFAQIGCAGVMIEDQvapkRCGHtRGRTVVDRAEAVARIQAACDARDEIRasglygdndIIILARTDARV---LNLDEAITRCQLFREIGADMTFLEAPTSIQEMKQYCAQVDGPklANMLEGGSTpiLSAAQLQDIGYSLAAYPLTLLSSATKAMQHSLQRL 299
                 47889*******************************************************9667***********99.99**********************987655543667777***************98866677999999*********66...99*************************************9995334443444589*****************************988876 PP

>> PF00463.16  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.5   5.9e-18     4e-14     150     238 ..     118     212 ..     100     221 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 5.9e-18
  PF00463.16 150 rPivadadtGfGGltavlkltklfierGaagihiedqasgtkkcGhmaGkvlvpiqehinrlvairlaad.il......gsdlllvartdaeaatl 238
                  P++ad+dtG+G  ++v + +  f + G ag+ iedq++  k+cGh  G+ +v   e++ r+ a+  a d i       + d++++artda   +l
  MMETSP0890-20130614|1560_1 118 IPLIADGDTGHGNAMNVKRTVHSFAQIGCAGVMIEDQVA-PKRCGHTRGRTVVDRAEAVARIQAACDARDeIRasglygDNDIIILARTDARVLNL 212
                 59***********************************97.69********************99755554222111111468999*****987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1230.86
//
Query:       MMETSP0890-20130614|1555_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-45  154.8   2.8    3.5e-45  154.5   2.0    1.1  1  PF00884.18 Sulfatase
     0.0061   15.8   0.1        0.1   11.7   0.0    2.2  2  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   2.0   5.1e-49   3.5e-45       1     379 []      83     546 ..      83     546 .. 0.84

  Alignments for each domain:
  == domain 1    score: 154.5 bits;  conditional E-value: 5.1e-49
                 -EEEEEEEST--CC.HCCHB---SCS.SHHHHHHHCSSEEESSEE-SCSSHHHHHHHHHHS--CCCH--H..CCT..TT............CBTTTTS--HHHHCCC.GT-EEEEE----TCGGGHHCCCHH----CCC-....CCCCGGGCSC-EEETTTE..........................S.GGGSHHHHHHHHHHHHH.HHCT.TSSEEEEEE--TTSSS----TTTTTSS-GGGS.............HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG.....HHH-TT----HHHHHHCCBEEEEEEE----TT......EE-S-EEGGGHHHHHHHH---......--TTST-----THHHH----.........................S.TT..CCEEEEEEECTB.CCCCCTS.CCCSCCCE........EETTT-TCC-CC CS
  PF00884.18   1 pnvvliladdlgag.dlglyggptrt.tpnldrlaeegllftnfysaapltspsraalltgryphntgvt..snteygg............gglprteetLpellkq.aGYntaaigkwhlgwlsrqsvyknrGFdrflgfptgednlknpedveynnsvlr..........................ppeggysdealldealefl.larn.dkPfflylatlgpHappyapdeyaekyatffddgeeka.......rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee.....gngplrggkgvnayeggtrvPllvwwpggkap.....rvseelvshvDlaptildlagilpk.vegpkdrlldgksllptlegka.........................qaddlkavrllnsraivkagweavnldpadasgcs........ydltaDpgelkn 379
                 p++++i++dd+g +  ++  + p +   pn+ +++ +g+ ++n+y+ + +++p+r alltg+  h+tg+   s++ yg+            + +    + Lpe+lk+ aGY+t++igkw+lg+  +   + nrGFd+flg+ +   ++ n+  ++    +l+                          ++++++ +  +++ al+ l + r  +  +++yla++g H+    ++     +++ +  +++           + +++ +++ +D  ig +l++ +e+  +++ l+vf SD+g s        +n p+rg k  +  eg+  vP+++++p  + +     r++ +l++hvD+++t+l+ ag+ p  +++ + ++ d +  +++l + a                         ++d+ k ++         + w++ ++ ++ +s c         +dl  Dp e +n
  MMETSP0890-20130614|1555_1  83 PDIIHIVVDDIGQNdLWDSDDLPFQSvSPNIHSMVLNGIELKNYYGQS-YCTPARVALLTGKFIHRTGFSyaSSHHYGDieifvdsnysvpIDPTGQSQLLPEFLKSvAGYSTHMIGKWNLGHCTEAYLPWNRGFDTFLGYFGDGIDYVNHVSNGESSINLGpdqievevmdfmeyedeasfswdagmKYKNEHTTILFTNAALKRLrKTREtKSSTYIYLAYHGLHD---DEQALTHIERDVDLKLWKSLdeffnytDRRLNFGKALSILDSEIGLILDYMKEEMHRRDYLIVFHSDNGGSPCArhicgNNMPYRGMKF-SDFEGALKVPAFMYSPTLFGKrgiigRKYRGLMHHVDWIATFLQVAGV-PDyHAQLNATTFDSVGHWNALLDVAvslksekyavrdtiyfslsddsyviRQDNFKLIYG-----YENDTWYSTKTEYEHLSNCYsgltdyylFDLDLDPTETNN 546
                 89************6677777777779******************775.******************985114444444***********99999999********956*************997777555*********99999999998877766544449********************************************966666**************7...444444444555555565547777777999****************************************998899**9*********9.************************************************.668888889999999999999998889998877777777777666667765555555554.....2233334444444444444467778889*******99876 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.014        93      19      63 ..     108     150 ..      86     200 .. 0.85
   2 !   11.7   0.0   1.5e-05       0.1     201     256 ..     336     389 ..     206     448 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.014
                 -SSHHHHHHHH---EES-.EE--SS-SHHHHHHHHH----TTT--- CS
  PF01663.17  19 edtpglaaLakegvsapn.lrpvfPtlTfpnhaslvTGlyPgsHGi 63 
                    p+++++  +g+  +n   +   ++  p+ ++l+TG++  ++G 
  MMETSP0890-20130614|1555_1 108 SVSPNIHSMVLNGIELKNyYGQ---SYCTPARVALLTGKFIHRTGF 150
                 6679999999999999974444...5556*************9996 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1.5e-05
                 ---SHCCHHHHHHHHHH--------TTTT-CCCEEEEEE-------B-TTSEEEHH CS
  PF01663.17 201 gpdspevedalrrvDraigqLlealdergllentniilvSDHGmadvlnkkvidln 256
                  +   ++ +al+ +D+ ig +l++ +e+  + +++i+  SD G +++   ++i  n
  MMETSP0890-20130614|1555_1 336 TDRRLNFGKALSILDSEIGLILDYMKEEMHRRDYLIVFHSDNGGSPC--ARHICGN 389
                 223444777*************************************9..6665533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.97
# Mc/sec: 1472.40
//
Query:       MMETSP0890-20130614|1561_1  [L=876]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-48  162.7   0.0    5.9e-34  117.2   0.0    2.5  2  PF00069.20 Protein kinase domain
    1.8e-28   99.2   0.0    5.2e-15   55.1   0.0    3.3  3  PF07714.12 Protein tyrosine kinase
    6.2e-05   22.4   2.8    0.00026   20.4   0.8    2.4  2  PF13360.1  PQQ-like domain
     0.0053   16.1   4.8        0.5    9.8   0.1    4.4  6  PF01011.16 PQQ enzyme repeat
  ------ inclusion threshold ------
       0.03   13.2   0.0      0.079   11.9   0.0    1.6  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.3e-14   3.6e-11       2      70 ..     380     450 ..     379     488 .. 0.83
   2 !  117.2   0.0   2.2e-37   5.9e-34      71     255 ..     587     801 ..     580     804 .. 0.94

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.3e-14
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE...S CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee...k 70 
                 +  e+lG G+fG+V +a+++ + k++A+K+++ +++ +  +k  +rE+kil+ l+Hpn+v++++++ e   +
  MMETSP0890-20130614|1561_1 380 QECERLGDGGFGVVHRAVNRLDAKEYAIKKIQLRSSGKLLNKI-LREVKILAGLDHPNVVRYYQAWLEmgvH 450
                 67799*********************************99876.78******************99775553 PP

  == domain 2    score: 117.2 bits;  conditional E-value: 2.2e-37
                 TEEEEEEE--SC-EHHHHHH.....HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE...........................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF00069.20  71 delylvleyveggdlfdllk.....kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl...........................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeil 255
                  +ly+ ++++ + +l + l      + g l  e   +i+ q+++gl+y+H  ++iHrDLKp+Ni+l  +g +ki DFGl++k+                           ++++ + tt vgtr Y APE l  +++y +kvD++slGv+l+e l  ++    e ++d l+ +      +l ++ +      + + +l+ ++l++dp+ R++a+++ 
  MMETSP0890-20130614|1561_1 587 MTLYIQMQLCSARTLRERLDarplgETGDLGPEATLSIFAQVARGLKYVHACELIHRDLKPANIFLMTDGAVKIGDFGLSRKHhrpqverlsldaetlsgthnfplvdisTTDDPEITTGVGTRLYSAPEQLS-GDDYNAKVDIFSLGVVLFECLAPRFSTLME-RYDLLAALPDAPISQLGSMLNLPIGILDGIISLLADMLKRDPDLRPSAAQAH 801
                 579*************99999999999999*******************************************************************************9999********************.*********************976555544.789999999999999999999999999*********************9975 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.7e-09   4.5e-06       4      71 ..     382     445 ..     379     476 .. 0.91
   2 !   55.1   0.0   1.9e-18   5.2e-15      75     155 ..     588     671 ..     579     684 .. 0.91
   3 !   14.4   0.0   4.9e-06     0.013     171     253 ..     712     798 ..     693     803 .. 0.68

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.7e-09
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvct 71 
                  ++lG G fG V++++ +     +  + a+K+++ +++ +  +++l+e+ki+  l+hpn+v+++ + +
  MMETSP0890-20130614|1561_1 382 CERLGDGGFGVVHRAVNR----LDAKEYAIKKIQLRSSGKLLNKILREVKILAGLDHPNVVRYYQAWL 445
                 589*************99....778899******9999999**********************98876 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 1.9e-18
                 SEEEEEE---B--HHHHHHHT...GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTT CS
  PF07714.12  75 pllivteyvkgGdLlefLrkk...ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiek 155
                 +l+i +++++  +L+e L ++   e+ +l  + +l++ +q+a+G++y ++ +l+HrdL   N++l ++  vki+DfGL+r++++
  MMETSP0890-20130614|1561_1 588 TLYIQMQLCSARTLRERLDARplgETGDLGPEATLSIFAQVARGLKYVHACELIHRDLKPANIFLMTDGAVKIGDFGLSRKHHR 671
                 48999***************9999999*****************************************************9944 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 4.9e-06
                 GS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH......HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HH CS
  PF07714.12 171 WmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell......kegkrlekpekcpeelyelmkqCweeepeeRptfk 253
                 + apE l+   ++ k D++s Gv+l+E +    s+   ++  ++l++l      + g  l+ p  + + + +l+ + ++++p+ Rp+ +
  MMETSP0890-20130614|1561_1 712 YSAPEQLSGDDYNAKVDIFSLGVVLFECLAPRFSTL--MERYDLLAALpdapisQLGSMLNLPIGILDGIISLLADMLKRDPDLRPSAA 798
                 78*************************987443332..233333333210011234566666777777777777777777777777655 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.8   9.5e-08   0.00026       2     152 ..      34     199 ..      33     213 .. 0.78
   2 !   12.9   1.2   1.9e-05     0.051       7     101 ..     126     248 ..     124     266 .. 0.46

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 9.5e-08
   PF13360.1   2 egvvsaldaatGkelWrv....dlkpalgggvseavldggtlfvas...akgrlvaldaatGkvlWskslegeiegaplvaggrvvvvtadnslvaldaetGkllWssqlrsepiarlrssaspaiagdrvivgfs.............sgklvaldlktGkvlWerplaa 152
                 +gv++ +da tG+e+ +      l ++ g+ v  + +++g++++++   a+ ++ a++ a   +   + ++++ eg+pl   g ++ +   ++l a+d  tG ++W + +++ ++  ++ss s+  + ++v+++                  + ald+++G+++W+ +la+
  MMETSP0890-20130614|1561_1  34 NGVIVTYDAWTGTEVGSFvsggPLMRPAGNLV--PNPEDGRIYAVEdgvARPWISAVELAERDIPEMQCVTAWQEGKPLQQCGLLYGER-LRTLMAVDVDTGQVQWFR-NGG-SNDVISSSISERTSEKTVVNSRDpldqrrpallqrdEFVVRALDAADGSERWNVTLAT 199
                 79999999999999999966665533599999..9999999999966779999999999888888888889999999999999996553.449*************95.444.45556788888888888877666666665555554355569***********999866 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.9e-05
   PF13360.1   7 aldaatGkelWrv.....dlkpalgggvseavldggtlfva.s............akgrlvaldaatGkvlWsksl.egeiegaplvaggrv......vvvt.....adn..slvaldaetGkllWs 101
                 a+d +tG++ W +     d+   +++  se + +++t++++ +            ++  + aldaa+G+++W ++l + ++ g+ + ++++v       v t     +d+  +l+  ++ + k lW+
  MMETSP0890-20130614|1561_1 126 AVDVDTGQVQWFRnggsnDV---ISSSISERT-SEKTVVNSrDpldqrrpallqrDEFVVRALDAADGSERWNVTLaTVTAFGPSISTSENVdnqqkqLVPTlqwtwPDGlsALYQNSQGESKILWT 248
                 55555555555552222222...333333444.4444444431333444444432333334666666666666666555555554444444444444444445555555555555555555555555 PP

>> PF01011.16  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.44   1.2e+03       9      23 ..      34      48 ..      28      48 .. 0.86
   2 ?   -0.9   0.0      0.46   1.3e+03       5      15 ..      65      76 ..      62      76 .. 0.79
   3 ?    4.0   0.0     0.013        35      14      24 ..     126     136 ..     120     146 .. 0.88
   4 !    9.8   0.1   0.00018       0.5      12      27 ..     181     196 ..     180     201 .. 0.87
   5 ?   -3.3   0.0       2.8   7.5e+03      21      31 ..     244     254 ..     244     255 .. 0.84
   6 ?   -3.6   0.0       3.3     9e+03       8      17 ..     831     840 ..     826     841 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.44
                TTEEEEEEST---EE CS
  PF01011.16  9 dGylyAlDakTGkvl 23
                +G ++ +Da TG ++
  MMETSP0890-20130614|1561_1 34 NGVIVTYDAWTGTEV 48
                89*******999875 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.46
                EE.STTTEEEEE CS
  PF01011.16  5 vg.tfdGylyAl 15
                v+ + dG++yA+
  MMETSP0890-20130614|1561_1 65 VPnPEDGRIYAV 76
                56688*****96 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.013
                 EEEST---EEE CS
  PF01011.16  14 AlDakTGkvlW 24 
                 A+D++TG+v W
  MMETSP0890-20130614|1561_1 126 AVDVDTGQVQW 136
                 9********99 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00018
                 EEEEEST---EEEEEE CS
  PF01011.16  12 lyAlDakTGkvlWkfk 27 
                 ++AlDa++G + W + 
  MMETSP0890-20130614|1561_1 181 VRALDAADGSERWNVT 196
                 89***********876 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 2.8
                 -EEEEEESSSC CS
  PF01011.16  21 kvlWkfktggp 31 
                 k+lW+ ++++p
  MMETSP0890-20130614|1561_1 244 KILWTRRLPAP 254
                 89***999877 PP

  == domain 6    score: -3.6 bits;  conditional E-value: 3.3
                 TTTEEEEEES CS
  PF01011.16   8 fdGylyAlDa 17 
                 +dG+l+ ++ 
  MMETSP0890-20130614|1561_1 831 ADGNLRVYNS 840
                 79****9995 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.9e-05     0.079     116     172 ..     617     670 ..     608     685 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.9e-05
   PF06293.9 116 aeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrl 172
                 + e +  ++ +v+r  + +h+ ++ H+dl ++ni+l +++    v + D+  +r+  
  MMETSP0890-20130614|1561_1 617 GPEATLSIFAQVARGLKYVHACELIHRDLKPANIFLMTDG---AVKIGDFGLSRKHH 670
                 5666778899****************************98...66666776555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       523  (0.0382534); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:01.06
# Mc/sec: 1980.39
//
Query:       MMETSP0890-20130614|1565_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   25.1   0.0    4.4e-05   23.1   0.0    2.1  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.27   10.9   0.0    1.6  1  PF01336.20 OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   6.4e-09   4.4e-05       7      83 ..     336     437 ..     331     439 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 6.4e-09
                 EESS--S-S....TSSSS-EEEEEEEECTTE.EE..................EEE--BSS-SSEEEE.EEEEEE.ESCGGGTEEEEEEEECHSSSCSEE--- CS
  PF00168.25   7 eAknLpnkd....kngtsdpyvkvslggaks.kk..................krTrvikntlnPvWn.ekftfe.vvaeelaeleleVkdedrfgkddflGe 83 
                 ++ +L +kd    k+ +sdpy ++ +++    ++                   r++  k +lnP ++   + f+ ++ ++ +++ + ++d+d  +++d++G 
  MMETSP0890-20130614|1565_1 336 QGIDLSPKDqymyKKASSDPYFMLFVAPSGTiSSngedidtsnvdpaafdliCRSKFQKENLNPEFEeMALDFSnLPSKDDDDVIIFLYDYDWTQQSDLIGI 437
                 6778999999999999************666633799******************************4467899777777777*****************96 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     4e-05      0.27       7      42 ..     146     189 ..     143     208 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4e-05
                 EEEEE...-EECSEEEEEEEE-SSSEEEEEEET.....CCHHHH CS
  PF01336.20   7 Vtsis...drsggkvafitlrDgtgriqvvlfr.....eeatkl 42 
                 Vt+++     +++k++++ l+D  g+i+v ++      ++++k+
  MMETSP0890-20130614|1565_1 146 VTTKEigkNEEEAKLQTLALNDKGGEIRVKIWAnptpkKAFEKF 189
                 6666666678899********************88665444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:01.09
# Mc/sec: 1853.33
//
Query:       MMETSP0890-20130614|1576_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.80
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|1581_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00066   18.3   0.6    0.00098   17.7   0.4    1.3  1  PF04499.10 SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4   7.2e-08   0.00098     339     408 ..      29     103 ..       4     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 7.2e-08
  PF04499.10 339 kiklvelkvlptiLdlFfkYpwNNfLHnvVydivqqvlngpmd.rgynrfLav....dLfekaklterIlegqke 408
                  i+l++++++  +L+ Ff +  + +LH  + d++ + + +  + +++n+ La+     Lf + ++++rI+ ++++
  MMETSP0890-20130614|1581_1  29 AIQLIHSRLFRLLLESFFTFSQHSLLHRSIIDLCISLFDSVTEvHDENQQLAIftsqLLFGDLNFIHRIIFAYNQ 103
                 689***********************************9888755667777653333688999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.61
# Mc/sec: 1151.04
//
Query:       MMETSP0890-20130614|1570_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.61
# Mc/sec: 919.26
//
Query:       MMETSP0890-20130614|1579_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-06   27.6   0.1    2.2e-06   26.8   0.1    1.4  1  PF00018.23 SH3 domain


Domain annotation for each model (and alignments):
>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   1.6e-10   2.2e-06       6      47 ..     101     145 ..      98     146 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.6e-10
                 BE-SSTTS-EB-TT-EEEEEEESSSSEEEEEETTT...TB---EE CS
  PF00018.23   6 YearesdELsfkkGDviivleksedgWwkgrlkgt...gkeGliP 47 
                 +eare+  +s + G +++vl+k +dgWw   l ++   g +GliP
  MMETSP0890-20130614|1579_1 101 FEAREDWQVSVRAGQTVTVLDKLDDGWWLIDLSRGlgrGPFGLIP 145
                 99*******************************998777788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 1503.92
//
Query:       MMETSP0890-20130614|1586_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   69.2   0.5    5.7e-19   67.6   0.3    1.9  1  PF09180.6  Prolyl-tRNA synthetase, C-terminal
    1.9e-19   69.7   0.1    3.3e-19   68.9   0.0    1.4  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    2.8e-17   62.3   0.0      8e-17   60.8   0.0    1.9  1  PF03129.15 Anticodon binding domain
    5.6e-17   61.6   0.1    1.5e-16   60.2   0.1    1.7  2  PF04073.10 YbaK / prolyl-tRNA synthetases associated domain


Domain annotation for each model (and alignments):
>> PF09180.6  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.3   1.7e-22   5.7e-19       1      68 []     662     755 .]     662     755 .] 0.97

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 1.7e-22
   PF09180.6   1 leefkkalekkgfvlapwcgd..eeceekikeet.....................gatirciPld...eeekeggkCilcgkpAkkwvlfArsY 68 
                 +e+f++al+++++vl+pwc    +e eek+ke +                     +a+++c+P +   + ++ ++kC+++g++A+ w+l++rsY
  MMETSP0890-20130614|1586_1 662 WEDFVPALDNNCLVLTPWCDPadQEAEEKVKELSrtealqragmdqedvrtatsvAAKTLCVPHNqptKLPDGTTKCFFTGRDATCWCLWGRSY 755
                 9******************865599***************************************999889999********************* PP

>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   9.8e-23   3.3e-19       1     169 [.     292     465 ..     292     468 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 9.8e-23
                 HHHHHHHHHHHHHHHCCT-EEEB--SEEEHHHHHH.---TTTHHHHCEEBTT---....SSEEE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-C.CCHHHHHHHHHHHHHHHHHH.CT-GGEEEEEEETTTCHCCHSEEEEEEEE CS
  PF00587.20   1 lknniiqfwrekfieeegflevdtPiltpeevlka.sGhvdkfademykvkktge....eelyLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEisprsGliRvReFtqaeieifvdp.eksneeleellalikqflek.lgieklrfrqstsgelahyakdtwdlevw 169
                 ++++i +++ ++++e +++++++ P+++ +  l+a  +hv+ fa e+  v+  g+    e ++ rP+++  +   f+k+l+s  r+lPlkl q+ +v R E +     +R ReF++ e ++ + + ++++++++++l+l+++++e+ l + ++    +t++e  +  ++t   e++
  MMETSP0890-20130614|1586_1 292 IWEQIQAWFDRRIKEDADVQNCYFPLFVTKGALEAeEDHVEGFAPEVAWVTRSGDtemaEPIAVRPTSETIMYPEFAKWLRS-HRDLPLKLNQWCSVVRWEFKYPTPFLRSREFLWQEGHTAHATiQEADQMVAQILELYRRVYEElLAV-PVIPGTKTEKEKFAGGHRTTTVEAY 465
                 688999999**************************9**************999996666678*******************9.999****************8888**************************************882445.7777777777776666666666665 PP

>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   2.3e-20     8e-17       1      93 [.     539     635 ..     539     636 .. 0.96

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 2.3e-20
                 SEEEEESSSS...HHHHHHHHHHHHHHHHC----EEE--.SSS----HHHHHHH----EEEEE-HHHHCTTEEEEEETTTTBEEEEETTTHHHHHHH CS
  PF03129.15   1 qvvviplgek...aeeledyakklaeeLreagirveldd.rsesigkklrradllgipfavvvGekelekgtvtvrdrdtgeqervsleelveklke 93 
                 +vv++pl  k    e+l ++++ + + ++ +g+r+++d+ ++ s+g+k+++++++g+p++ ++G+++le+++vt  +r +g++ +++le++++++++
  MMETSP0890-20130614|1586_1 539 HVVIVPLVYKtctMEQLSPFVDLVMAAVKSKGFRCKVDNrSNYSPGWKYNHWEQKGVPIRMEIGPRDLEAKQVTAVRRVDGNKSTIPLENIASTIES 635
                 69*******999977799**************************************************99**********************99976 PP

>> PF04073.10  YbaK / prolyl-tRNA synthetases associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   4.3e-20   1.5e-16       1     122 [.      60     185 ..      60     186 .. 0.93
   2 ?   -3.2   0.0       1.8   6.2e+03      81     100 ..     290     308 ..     289     310 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 4.3e-20
  PF04073.10   1 tpgtktieelaaalgvdpeaiaKtlvlkdkkge.lvlvllpgdreldlkklakalgakklrlaseeelaellgvepGavgPlglk...aagvpvllDeslleyervvvgagengatlelspedlrd 122
                 +++++t+e + + l+  +++++K+l+lkdkk++  +lv +  +r +dlk+l k lg k+       + ++ll+v++Gav+P ++    ++ v++ lD++ll+++++++++ + ++++ + p+ l++
  MMETSP0890-20130614|1586_1  60 HEEVPTVEIMIEVLNGINARLTKNLLLKDKKSGsIFLVTTTPERNVDLKALNKMLGLKENANLRFTDCEKLLNVTKGAVSPYAVIndtDNVVQMALDAELLQSTEICTHPLRCDRSVSVEPNALLK 185
                 899**************************77777**********************888888888888888999*************99999*****************************99986 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.8
  PF04073.10  81 lglkaagvpvllDeslleye 100
                 +g+  ++++ ++D +++e  
  MMETSP0890-20130614|1586_1 290 FGI-WEQIQAWFDRRIKEDA 308
                 788.899********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:01.25
# Mc/sec: 1447.40
//
Query:       MMETSP0890-20130614|1596_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-07   28.6   0.0    1.4e-06   27.6   0.0    1.5  1  PF03398.9 Regulator of Vps4 activity in the MVB pathway
  ------ inclusion threshold ------
       0.12   11.4   2.6       0.15   11.1   1.8    1.1  1  PF04641.7 Replication termination factor 2


Domain annotation for each model (and alignments):
>> PF03398.9  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.1e-10   1.4e-06     125     165 .]       3      43 ..       1      43 [. 0.92

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.1e-10
   PF03398.9 125 venreegVnekvvekLsvktpseelvekylkeIAkeynvel 165
                 ++++ e+Vn++vv+kL +++ps   v kyl +IA eynv++
  MMETSP0890-20130614|1596_1   3 KNDQYECVNSRVVHKLGISPPSALIVIKYLVAIADEYNVDW 43 
                 555689*********************************98 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8   2.2e-05      0.15     160     223 ..      93     191 ..      89     228 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.2e-05
   PF04641.7 160 fkeedvvplnptkeelellkarleeekak.kkkkkkkkkkkkaeakgekaeaeaksksskee...................................ssk 223
                 ++ ++++ + p +ee+++ ++  +++++    ++ ++++++k ++ g+++++++++++++++                                   ++ 
  MMETSP0890-20130614|1596_1  93 LQIAQIIDIQPPQEEQQQDNELQQQREQLfPSSNNSDTHQNK-NNIGTSKQHQEQQQQQRNSpssdpptvedihipaapgstlpstiekttptvprpQNL 191
                 667899*******99887665554444444333333333333.344444444444444444456788888999999888888887775555554444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1237  (0.0904769); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:01.36
# Mc/sec: 403.50
//
Query:       MMETSP0890-20130614|1600_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-11   43.8   0.0    2.2e-11   43.4   0.0    1.2  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.6e-15   2.2e-11      54     304 ..       6     283 ..       1     286 [. 0.69

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.6e-15
                 C---EEEEE--S----HHHHHHHH--...-EEEEEEETT.S-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH......HHHHHHHHHHS--TT...-CHHHHHHHHT-HHCCCHHHH----..-B---.-----.HHHHHHCCCCCTHTT---EEEEEGGG-TT-................S...----T...........................TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHT...G----EEEE CS
  PF00291.20  54 kggkgvveassGNhGaavAlaaallg...lkativvpsg.appekialiralGaevilvvssvegdyddaaelaeka....lelvrplkgeildqs...ndpdviaGygtiglEileqlgkpdpdavvvpv.GgGgl.iaGiakglkelilpkirvigvepegsdalarslragervqldkk.ttia.glscgt..........................pldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaa...gkgkrvvvv 304
                 +  +++++a+sG++G a+ +a    +   +++ +++p+g +++ ++a++r+     i + ++ ++d d++++ +       ++ v++        +    +   +++  +++l+ +   + p+   +v+p+   G l +a +ak++++    +   i ++ + +d   r+++    +++ +  +t++  +++++                          +     ++ l+++l+ e v v+d+ +lea+  + + +  +++p++a+alaa   +  ++       ++ ++vvv+
  MMETSP0890-20130614|1600_1   6 DESRTLLVATSGDTGPACVAATETVNsnhVRVFCCYPKGmVSNFQRAQMRRSKRALIASFEGGGDDMDAVLKKIGSDstlkASGVNS--------YniaRPLAQCVHFIWLSLQFFNNTE-PNNIKIVIPTgAMGNLvAAILAKKIGA----PFSKILCACNSNDFTFRAITLCDATKSSHMlKTVSdAINIQVpynferllyfaggveysllmsqiysgQHVALNNLNLAQTLALEAVRVDDQRTLEAISFFSH-DNFIPDPHTAVALAATQDQGWCN---TdlrDSISTVVVL 283
                 344789****************99976778888888****************99777776665555555555444332332333444........33345666699*********99995.333359999955664414445666666....888888888888888777766554332222323333555555888888999889988998999999995555555666666666778***********88877.68*************97754333...2344555556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.95
# Mc/sec: 895.48
//
Query:       MMETSP0890-20130614|1607_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:01.15
# Mc/sec: 371.85
//
Query:       MMETSP0890-20130614|1608_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 768.83
//
Query:       MMETSP0890-20130614|1611_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00045   19.3   0.0      0.001   18.2   0.0    1.6  1  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.033   13.7   0.1      0.076   12.6   0.0    1.5  1  PF09838.4  Uncharacterized protein conserved in bacteria (DUF2065)
      0.063   13.0   0.1        0.5   10.2   0.1    2.3  1  PF04365.8  Protein of unknown function (DUF497)


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.2e-07     0.001      13      51 ..      33      73 ..      31      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.2e-07
                CTTSBHHHHHHHHHHHHTS-GGGEEEE..E---BETTTSBT CS
  PF00240.18 13 epsdtvselKekieekegipvdqqrLi..ysGkvLeDdrtl 51
                +++d++++lK+ +ee++ ip  ++rLi   +G++  D+  l
  MMETSP0890-20130614|1611_1 33 SENDSIDDLKQMLEEATSIPRKRMRLIglVKGRLPNDNLRL 73
                789***********************866778877777766 PP

>> PF09838.4  Uncharacterized protein conserved in bacteria (DUF2065)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.076      23      44 ..      41      62 ..      39      63 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
   PF09838.4 23 wrrmleqlaelpdrqLRliGlv 44
                +++mle+++++p + +RliGlv
  MMETSP0890-20130614|1611_1 41 LKQMLEEATSIPRKRMRLIGLV 62
                79******************97 PP

>> PF04365.8  Protein of unknown function (DUF497)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00011       0.5      32      58 ..      85     110 ..       6     121 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00011
   PF04365.8  32 ledrresndEeRfiaiGkeidgrllvv 58 
                  ed++e+ +E+Rf ++G + +++ll +
  MMETSP0890-20130614|1611_1  85 EEDEEEQVGEIRFTLMG-TPNEKLLQA 110
                 37888888*********.778888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.52
# Mc/sec: 599.09
//
Query:       MMETSP0890-20130614|1609_1  [L=733]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-22   78.5  13.7    1.1e-19   70.2   5.8    2.2  2  PF00474.12 Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> PF00474.12  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   5.8   7.9e-24   1.1e-19       1     160 [.      98     256 ..      98     264 .. 0.95
   2 !   11.2   0.2   6.9e-06     0.095     210     404 ..     369     589 ..     332     591 .. 0.67

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 7.9e-24
  PF00474.12   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGl.avvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgali 160
                 +f++gr l   v+ l+la++ + ++s +G a + +++ + ++++l lg+ l ++l++l+la  + +ag lTlpd+ + ++++     ++   + ++ + + l+ +lvg + ++  ++G++++ ++l+ ++l+ lYtv GG+l+v y d+ q++l + g+ +
  MMETSP0890-20130614|1609_1  98 FFVGGRTLSLPVVTLTLASQCVDSNSVLGNADLSYKYHFwDGACLPLGLGLSLILNGLFLARHMNRAGLLTLPDLWARKYGKAA--EVIGGSVCIVSFCALLAGNLVGCGTILAFLFGVSLKEGILISGILMFLYTVCGGILSVAYSDIAQSTLGISGLAV 256
                 8************************************98578999************************************999..78888889999*********************************************************9999876 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6.9e-06
  PF00474.12 210 glvlGvaglphilvRflaak.....dakailkgvlkltivlilvligmisiilfai..klagavpkavgtevgvsn........iaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkk......irrkasakekelvgvsriivlvvislaillavqee....qkg.vlklvelafaglasavlavillalfwkrvneqGAlagli 404
                  l +G   +    +R++aak         +++gvl + + +   +ig +s+ ++++  k+a +  + +  +v  +          a  +L  +  p++l    l  ++Aa mst ++ +l+ s++ ++ l+ +      +++++  ++ +l+ v ri  +  ++++il+a  +e    ++     l  +af++  +a +  i  a ++k +  +   a+++
  MMETSP0890-20130614|1609_1 369 ILAFGNLAAIDFQARCMAAKdewtaTWGNLIAGVLGGFVGIPFAFIGGVSRYYYGAdsKYAKFEADSCSRSVDFPTcaqwkpdpKANLRLLTHEAPHWLGIWSLIGIVAASMSTSDGAILAMSTVAAHNLFRRlpefvpFFPSNLVTDENLLLVTRIFGIPCTMVSILIASYAEsshgDQSaTGYLLIVAFDISLAACVVPIFAAFYVKDASPNAGVAAML 589
                 46788888888899******5554445566777777777788889999****99862368888887777666544411011112567899999999998666667799**********************9873333336889988888888888887666666666665544411113332334445566665555555555677777666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:01.18
# Mc/sec: 1488.58
//
Query:       MMETSP0890-20130614|1615_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-41  139.2   1.0    2.9e-41  139.0   0.7    1.0  1  PF01247.13 Ribosomal protein L35Ae
     0.0024   17.6   0.1       0.81    9.5   0.0    2.3  2  PF01782.13 RimM N-terminal domain


Domain annotation for each model (and alignments):
>> PF01247.13  Ribosomal protein L35Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.7   4.2e-45   2.9e-41       1      95 []      12     106 ..      12     106 .. 0.99

  Alignments for each domain:
  == domain 1    score: 139.0 bits;  conditional E-value: 4.2e-45
  PF01247.13   1 lyvkavflgykrgkrnqkentallkiegveskeeakfylGkrvayvykakkkkkkskirviwGkvtrphGnsGvvrakFkknlPakalgkrvrvm 95 
                 lyvk+v++gykrg+rnq+ +t llk++gv++k+ a++y Gkrvayvyka++ k++sk+rviwGkvtrphG++GvvrakF++nlP++a+g  vrvm
  MMETSP0890-20130614|1615_1  12 LYVKGVVMGYKRGLRNQYVSTNLLKLQGVDDKKGAEWYSGKRVAYVYKAHSLKQGSKYRVIWGKVTRPHGSTGVVRAKFRRNLPPSAIGGPVRVM 106
                 89********************************************************************************************8 PP

>> PF01782.13  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00012      0.81      55      79 ..      31      55 ..      15      61 .. 0.85
   2 !    6.4   0.0    0.0011       7.7       2      19 ..      73      90 ..      72     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00012
                ---EEEE----S----TTTTT-EEE CS
  PF01782.13 55 kgvvvklegvddrdaAealkgaelf 79
                ++ ++kl+gvdd   Ae + g+++ 
  MMETSP0890-20130614|1615_1 31 STNLLKLQGVDDKKGAEWYSGKRVA 55
                6789*****************9984 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0011
                ---EEEE------EEE-- CS
  PF01782.13  2 vGkIvgahGlkGevkVks 19
                 Gk++++hG  G v+ k 
  MMETSP0890-20130614|1615_1 73 WGKVTRPHGSTGVVRAKF 90
                59************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 348.56
//
Query:       MMETSP0890-20130614|1625_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.71
# Mc/sec: 232.89
//
Query:       MMETSP0890-20130614|1621_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-08   32.1  18.8    4.1e-06   26.3   5.3    3.1  2  PF01554.13 MatE
    5.1e-07   28.3   4.0    5.1e-07   28.3   2.8    2.2  2  PF03023.9  MviN-like protein
  ------ inclusion threshold ------
       0.11   11.5   5.1       0.38    9.8   0.0    3.2  3  PF01943.12 Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   5.3     9e-10   4.1e-06       2     160 ..     117     272 ..     116     274 .. 0.89
   2 !    9.4   2.3   0.00014      0.65      27     147 ..     380     511 ..     360     526 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 9e-10
  PF01554.13   2 ialaqllqvlsslidtlvvgrl.gasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyllnipln 160
                 ++l  l   l+sl+d+ ++g + ++s+laa++ a s +  if+ ++ +++ +++ v+ a+  ++ ++a+ ++  + i +l+i++v++++++ ++++il       e++++a  y++  ++g+ + ++++ l+++  +  d++ pl ++l++  + n++++
  MMETSP0890-20130614|1621_1 117 LLLVWLSSPLLSLADSTFIGAFrSTSELAALGPACSMSDNIFFAATFVAVVTTSSVATAVANNDERGARAITSAGCIAALGIGLVLTAFLYGASPNILASC---GELAPAAIAYVQNRCIGFTPGLISTSLQAASMARRDVRSPLLAALVAG-GTNLIMD 272
                 55666667799****************************************************************************99999999988776...578889999999999999999999999999999999999999888887.7777766 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00014
  PF01554.13  27 alaavsialsilsfifipllglgtalsilvgqalGagnp...........erakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyi 147
                 ++aa++i + + +++  ++ +l++ ++++v  a G+              ++ k++v  +++ +l++++v a+l ++++ +   lf+ d++v+++    +++l+l + l + + +l g + + +dt+   ++
  MMETSP0890-20130614|1621_1 380 DAAAHQILTALYWLFAPVGDALSSTVQTFVPAARGKDAReqrsmqtteygKATKKVVADATKAALALGFVNALLAIALPTFAPFLFSRDQQVISVLLATVPLLGLNLMLHAATGALEGTMLAFKDTRRLSFF 511
                 677777777777777778888888888888877776554111111122223567889999**************************************************9999999999999999876555 PP

>> PF03023.9  MviN-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   2.8   1.1e-10   5.1e-07     254     398 ..     164     301 ..     153     312 .. 0.90
   2 ?   -0.6   0.5     0.066     3e+02     250     295 ..     448     493 ..     437     528 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.1e-10
   PF03023.9 254 vstvlLPrlSrsakeededevrdllkqairltllllipvsigllvlsdpivsvlferGaFseedvtataevLaayalgLipyalvklllrvFYAredtktPvkislislvlnillsllllpplgvvglalAtslsallnlvflyv 398
                 v++v  ++++ +++++de  +r++++ +    l + ++++++l   s++i+      G+  + +++++++   ++  gLi+ +l+        Ar+d+++P+ ++l++  +n++++ +l+p +g++g a At+l+  ++l++++ 
  MMETSP0890-20130614|1621_1 164 VAVVTTSSVATAVANNDERGARAITSAGCIAALGIGLVLTAFLYGASPNILAS---CGELAPAAIAYVQNRCIGFTPGLISTSLQAAS----MARRDVRSPLLAALVAGGTNLIMDAILVPKYGLIGAAHATALAQYASLAVMLH 301
                 45556688999*************************************99876...59*************************98655....59******************************************888877654 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.066
   PF03023.9 250 fgvsvstvlLPrlSrsakeededevrdllkqairltllllipvsig 295
                 f+++++++ LP+++  + ++d++ +  ll+++  l l l++ ++ g
  MMETSP0890-20130614|1621_1 448 FVNALLAIALPTFAPFLFSRDQQVISVLLATVPLLGLNLMLHAATG 493
                 7889999999999999999999988888888777777777766655 PP

>> PF01943.12  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   8.3e-05      0.38     196     243 ..      99     146 ..      87     157 .. 0.88
   2 ?    0.6   0.1     0.055   2.5e+02     112     166 ..     157     213 ..     152     243 .. 0.65
   3 ?    0.4   0.1     0.062   2.8e+02      77     122 ..     439     482 ..     422     497 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 8.3e-05
  PF01943.12 196 fvifskklfkellsfslplflsslaislytyidtvilglllgaeavGi 243
                 +++  k ++ el sf+lpl+l  l+++l++  d+ ++g++ ++ +++ 
  MMETSP0890-20130614|1621_1  99 KNNEEKSMISELTSFTLPLLLVWLSSPLLSLADSTFIGAFRSTSELAA 146
                 4555599*********************************99998875 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.055
  PF01943.12 112 lilallilllvsissffsglfqglekmkyiaisqvveklvslilvfiavflgld..l 166
                 +++a++++ +v++ss+ +   +  e+   ++ s  +   +++ lv+ a+++g +  +
  MMETSP0890-20130614|1621_1 157 IFFAATFVAVVTTSSVATAVANNDERGARAITSAGCIAALGIGLVLTAFLYGASpnI 213
                 566677777777777777777777777766666666666666677777777775441 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.062
  PF01943.12  77 ilsnvllvllllslifllilliaallglpdlavlllilallilllv 122
                   +++l + ++ +l++++++ +a +l+  d  v+ ++la + l  +
  MMETSP0890-20130614|1621_1 439 ATKAALALGFVNALLAIALPTFAPFLFSRDQQVISVLLATVPL--L 482
                 5566777888888999999999889999999999998888887..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.43s 00:00:01.33 Elapsed: 00:00:00.95
# Mc/sec: 1354.57
//
Query:       MMETSP0890-20130614|1626_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.7  34.5    3.3e-11   43.1  23.9    1.7  1  PF08597.5  Translation initiation factor eIF3 subunit
  ------ inclusion threshold ------
      0.095   12.3  15.3      0.032   13.8   1.4    2.1  2  PF11708.3  Pre-mRNA splicing Prp18-interacting factor
        2.9    7.4  12.2       0.19   11.3   4.4    1.9  2  PF05203.11 Hom_end-associated Hint
        3.1    8.1   5.4        1.1    9.6   0.4    2.5  3  PF12369.3  Gonadotropin hormone receptor transmembrane region
        4.9    6.1  11.3        4.1    6.4   6.9    1.5  2  PF00318.15 Ribosomal protein S2


Domain annotation for each model (and alignments):
>> PF08597.5  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1  23.9   1.2e-14   3.3e-11       1     245 []       1     229 []       1     229 [] 0.72

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.2e-14
   PF08597.5   1 M.dsWDdeefevpeskkkaavkdkwddEdededvkdsWdeeeeeekekekakkaakakakkelkakieekekakkekkekekekkeeeldeedeaaekerlrkleeesDLknAadlfgglkkaltkdtdlesldlfnpktkedFeelrkalakkltkleksleYasfledlirdllksLssedikkvsstlnvlineKekeEkaak..gkkKkkgkakaklnlekankklddydk.ydddeydd......ddDFM 245
                 M dsW+d++fe++ +  + ++  +w+dE          +ee+eee+ +  +k+  +++  k+l+ak+e++ k+ k       +     +++e+ + +k+r r+ +ee D + +++lfg   +  +    + ++  ++ k+ +d  +l ++l +k++k  k+ +  +f ++++r+  +  +++d+ ++++ l++  + K+k++++ +  +k  k++k+++k +le + +  +++    + d+yd+        DFM
  MMETSP0890-20130614|1626_1   1 MaDSWEDDDFEPQLPVLN-KAPTSWEDE----------EEEDEEETVRLPQKPTLSEATRKRLEAKAEAE-KQAKLD-----S---MLEENETAEDRKLRERRVVEEGDNELTNELFG---A--SPGAVDPDAVVIKLKDLKDHLQLVQTLNDKMSKS-KNNHIVAFTKEFLRSNETVFEATDLTDMITILTNQKETKLKAQRKPTvsKKEQKSKKQTKKEQLEAQRRAEENFGAaSGGDKYDEfdydydATDFM 229
                 889********9999888.8999*****..........55566777777777777777788888883333.222222.....2...1235678899**********************...2..23333344556799999*************9985.5678899*************************************9997733334444444444444444444443312344555544333566787 PP

>> PF11708.3  Pre-mRNA splicing Prp18-interacting factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.4   1.2e-05     0.032     141     203 ..      24      86 ..      17     120 .. 0.78
   2 ?    4.2   4.0      0.01        28     111     179 ..     133     201 ..     123     217 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
   PF11708.3 141 weaakkge..lnvhlqAnPTklellakkekekkekkkkqkkesllekyggeevleekpkeellgq 203
                 we ++++     v l  +PT  e ++k+ ++k+e++k++k +s+le  +++e  ++k +e ++ +
  MMETSP0890-20130614|1626_1  24 WEDEEEEDeeETVRLPQKPTLSEATRKRLEAKAEAEKQAKLDSMLEENETAE--DRKLRERRVVE 86 
                 5544444333599*********************************999888..44444444443 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.01
   PF11708.3 111 adeedalykgdnfvrlsgeakeleklqkfAweaakkgelnvhlqAnPTklellakkekekkekkkkqkk 179
                 +++++++   ++f+r  +   e ++l  +     +++e++++ q +PT  + ++k++k+ k+++ ++++
  MMETSP0890-20130614|1626_1 133 SKNNHIVAFTKEFLRSNETVFEATDLTDMITILTNQKETKLKAQRKPTVSKKEQKSKKQTKKEQLEAQR 201
                 567777778888999666666666666555555555555999999999999999988887654444333 PP

>> PF05203.11  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4      0.27   7.5e+02     138     152 ..      52      66 ..      16     131 .. 0.58
   2 ?   11.3   4.4   6.9e-05      0.19      66     142 ..     136     221 ..     108     229 .] 0.75

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.27
                 xxxxxxxxxxxxxxx RF
  PF05203.11 138 ieveieardfaalsp 152
                  e + ea+  a+l++
  MMETSP0890-20130614|1626_1  52 LEAKAEAEKQAKLDS 66 
                 222222222222221 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.9e-05
                 xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05203.11  66 nHiLvLrtpqnielterklkgke.........nlakkkesdgraieivkevtksfekek.egeeeakeiakefasvsaseeyievei 142
                 nHi     ++  +++e  ++ ++         n++++k +++r+ ++ k+ +ks +++k e+ e++++++++f ++s  ++y+e++ 
  MMETSP0890-20130614|1626_1 136 NHIVAFT-KEFLRSNETVFEATDltdmitiltNQKETKLKAQRKPTVSKKEQKSKKQTKkEQLEAQRRAEENFGAASGGDKYDEFDY 221
                 3333333.334455555555555888999998999999999**9**********999998999999***************998874 PP

>> PF12369.3  Gonadotropin hormone receptor transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.45   1.2e+03      16      29 ..      65      78 ..      43      95 .. 0.60
   2 ?   -3.3   0.0       4.2   1.1e+04      38      42 ..     129     133 ..     117     154 .. 0.55
   3 ?    9.6   0.4   0.00039       1.1       6      58 ..     171     224 ..     166     225 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.45
   PF12369.3 16 svkqdsdelaevka 29
                 ++ + +e+ae+++
  MMETSP0890-20130614|1626_1 65 DSMLEENETAEDRK 78
                33344455555555 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4.2
   PF12369.3  38 dlssy 42 
                  +s++
  MMETSP0890-20130614|1626_1 129 KMSKS 133
                 33332 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00039
   PF12369.3   6 selhpicNkSsvkqdsdelaevka...srrstleddlssyskgfdlvenefhydyd 58 
                 + l++ +   ++k++  ++ ++k+   +++  +e+ +   s g    ++ef+ydyd
  MMETSP0890-20130614|1626_1 171 TKLKAQRKPTVSKKEQKSKKQTKKeqlEAQRRAEENFGAASGG--DKYDEFDYDYD 224
                 5666666666777777777777775453333333333333333..2479******9 PP

>> PF00318.15  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   5.7e+02     103     149 ..      65     111 ..      45     113 .. 0.73
   2 ?    6.4   6.9    0.0015       4.1      32     134 ..     110     207 ..     102     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHH...TT.SS.-SEEEE CS
  PF00318.15 103 lkkleklekleklskkeklklkkelkklekslegikkmkklPdliiv 149
                  + le+ e+ e+ +++e+  +++  + l ++l g ++ +  Pd++++
  MMETSP0890-20130614|1626_1  65 DSMLEENETAEDRKLRERRVVEEGDNELTNELFGASPGAVDPDAVVI 111
                 33444445555588888888888888999999999998888998887 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0015
                 EE-HHHHHHHHHHHHHHHCCCHH..-GGEEEE--SCCH.HHHHHHHHHC---EEE-SS-----GTTCCHCCCHHHHHHHHHHTTT....STHHHHHHHHHHHHHHHHHH CS
  PF00318.15  32 iidlektlkaLkralkvvkelak.kkgkilfvgtkkqa.qkivekaakrtgqsyvnnrWlgGtLTNwktikkslkklekleklek....lskkeklklkkelkkleksl 134
                 +i+l+  + +L+    +  +++k k+++i+ + ++    ++ v +a  +t++  +        LTN+k++k++ ++  +++k+e+     +kke+l   + +++ e+++
  MMETSP0890-20130614|1626_1 110 VIKLKDLKDHLQLVQTLNDKMSKsKNNHIVAFTKEFLRsNETVFEATDLTDMITI--------LTNQKETKLKAQRKPTVSKKEQkskkQTKKEQL---EAQRRAEENF 207
                 799999999999999999999999999999998876557***********99999........********9999988877777653333333333...3444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1940  (0.141896); expected 273.4 (0.02)
Passed bias filter:                      572  (0.0418373); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:00.70
# Mc/sec: 783.95
//
Query:       MMETSP0890-20130614|1628_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-39  133.3   0.2    1.1e-38  132.7   0.1    1.3  1  PF09325.5  Vps5 C terminal like
    1.5e-26   92.3   0.0    2.9e-26   91.3   0.0    1.5  1  PF00787.19 PX domain
    1.6e-06   27.6   0.8    2.5e-06   27.0   0.5    1.3  1  PF03114.13 BAR domain
    0.00033   19.8   3.4       0.05   12.7   2.3    2.1  1  PF10456.4  WASP-binding domain of Sorting nexin protein
      0.007   16.2   1.1      0.014   15.3   0.8    1.4  1  PF11827.3  Protein of unknown function (DUF3347)
  ------ inclusion threshold ------
      0.039   12.4   1.1      0.058   11.9   0.8    1.2  1  PF00148.14 Nitrogenase component 1 type Oxidoreductase
       0.14   10.4   5.6        0.2    9.9   3.9    1.1  1  PF04632.7  Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> PF09325.5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.1   5.6e-42   1.1e-38      23     235 ..     208     418 ..     176     419 .. 0.93

  Alignments for each domain:
  == domain 1    score: 132.7 bits;  conditional E-value: 5.6e-42
   PF09325.5  23 DewFedkkeeldslesqLkklykalellvsqrkeLasataelakslesLasvelskslsealsqLaeveekikellerqaeqdvltLgetldeylrligsvksvfeqRvklwqqwqeaeselskkkeqleKlkkagksqqdklqqakkeveelerkveeakkeFedisekikkElerFekervedfknvlekylesaiesqkevielWetfls 235
                 De   +  +++++le q+ +++k +  l +  ++La+ + e++ s + L+++e    ls+al +L+ ++++++ l+++q  +++ +++e +++y+r++g+vk+++++R+k+ + +  a  +l  kk+ ++Kl ++   ++++++ a+  ve++ + v++a++ Fe++s+++ +E+erF +e+++d+++v+ +y   +ie++k++ + W+++l+
  MMETSP0890-20130614|1628_1 208 DEKIDEVVAYVNNLEVQMGNVAKHTTGLMKRNRDLANGLFEFGLSFTLLGQMETD-PLSTALTKLGHTADQLSLLYTEQVAKETAKFEEPMYDYIRVLGAVKAALNARAKHKHALALACVDLDNKKALAAKLAGQ-PGKEERAALAEHAVEKAHADVAHARDAFERVSARVIREMERFKREKANDIRRVVLDYTAMQIEHNKRLENHWQALLP 418
                 888889999********************************************99.9******************************************************************************.5666*********************************************************************9987 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   1.5e-29   2.9e-26       3     112 ..      38     149 ..      36     150 .. 0.97

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 1.5e-29
                 EEEEEEEEEEEE.CETSSEEEEEEEECS-.....SCEEEEEEEHHHHHHHHHHHHHHTTTSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHHHHC CS
  PF00787.19   3 laqvsvleretkgskkhsyylievelktg.....akewtvkRrYsdFeeLhskLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrksevltsFLev 112
                 +++++v++++++ ++++sy+ ++v ++t+       +++v RrYsdF++L ++L r  p+ ++PplP+k ++g+   ++ efie+rr+ Le++L+rl  h el+ s+ ++ FL+ 
  MMETSP0890-20130614|1628_1  38 SLIITVSDPKKESEGINSYISYKVNTQTNlpefnYGQFSVIRRYSDFIWLSEQLARDVPGAIVPPLPEKAVVGR---FSAEFIESRRRLLEKFLNRLGAHDELSASKYFRLFLQA 149
                 57899*****99*******************99999*************************************9...************************************96 PP

>> PF03114.13  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.5   1.3e-09   2.5e-06      24     229 ..     207     421 ..     192     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.3e-09
  PF03114.13  24 LDedFeelerrfdtteklikklvkelkeylqanpaarakqivleqplellaeamieigkelgedsefgkalekygeaekklaqlleqleervesnvldplrellkefkeiqkeikklerkr.......lDyDakrtrlkklktkkskkak...........eeelrqAkqeyeelneelkeeLpnlleleveflenqlqafveaqldfhkqlaqlleqlqqqla 229
                  De+ +e+   ++ +e  + ++ k +++ ++ n+++ +  +       +++ +++ +g+     ++++ al k+g + ++l+ l ++  ++ + ++ +p+  +++ +  ++ ++  +++ +       +D+D+k++   kl  +  k+++            +++  A++++e+ ++ + +e++ +   +++ + + + ++  +q++  k+l +  + l ++l+
  MMETSP0890-20130614|1628_1 207 ADEKIDEVVAYVNNLEVQMGNVAKHTTGLMKRNRDLANGLF-------EFGLSFTLLGQMET--DPLSTALTKLGHTADQLSLLYTEQVAKETAKFEEPMYDYIRVLGAVKAALNARAKHKhalalacVDLDNKKALAAKLAGQPGKEERaalaehavekaHADVAHARDAFERVSARVIREMERFKREKANDIRRVVLDYTAMQIEHNKRLENHWQALLPELE 421
                 5788888888889999999999*******************.......*******9999884..4457************************************999999998888876653444444799********9995555444499******************************************9*****************999999988875 PP

>> PF10456.4  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.3   2.6e-05      0.05      52     225 ..     210     409 ..     204     419 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.6e-05
   PF10456.4  52 kmdesvkelse..vanefakkqagglkkeyqkvGkafkalsqafevdetaasaaLnealaatgktYeeigelfaeqpkkDlepllellaeYkGllanfPDiihv...qkgale.........kv..........kesdklveegklsseeke..elkkrvnvisyallaeinhfhkervrDfksvmqlyLkqqikfyqkv 225
                 k+de v  +++  v    + k+++gl k  + + + + ++  +f++ +++  + L+ al++ g+t ++++ l  eq  k+  +  e ++ Y  +l+++   +++   +k al+         k+          ke     +e+ +++++++  + ++  + +s  ++ e++ f++e+ +D+++v+  y   qi+  +++
  MMETSP0890-20130614|1628_1 210 KIDEVVAYVNNleVQMGNVAKHTTGLMKRNRDLANGLFEFGLSFTLLGQMETDPLSTALTKLGHTADQLSLLYTEQVAKETAKFEEPMYDYIRVLGAVKAALNArakHKHALAlacvdldnkKAlaaklagqpgKEERAALAEHAVEKAHADvaHARDAFERVSARVIREMERFKREKANDIRRVVLDYTAMQIEHNKRL 409
                 566666665541133345678899999999***************************************************99999999999888888777654333666653211111111111110111111122122222223333333113344567799999999999999999999999999999999876665 PP

>> PF11827.3  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8     7e-06     0.014      37     131 ..     283     385 ..     257     394 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7e-06
   PF11827.3  37 vkekekedealkevlsaYlelkdaLvkddakkakaaakklaealeavdak........klskeeakelkktaekakekdiekqReaFkkLSeeviellkkaga 131
                 +++ +ke+++++e + +Y+ +  a  +  +++ak++ +   + ++  ++k        +  kee+++l+++a ++ ++d++++R+aF+ +S++vi  ++ ++ 
  MMETSP0890-20130614|1628_1 283 TEQVAKETAKFEEPMYDYIRVLGAVKAALNARAKHKHALALACVDLDNKKalaaklagQPGKEERAALAEHAVEKAHADVAHARDAFERVSARVIREMERFKR 385
                 556677777777778888877776666555555555555555555555552222233333444455555555444455****************998888854 PP

>> PF00148.14  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8     3e-05     0.058     243     327 ..     276     361 ..     251     392 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
  PF00148.14 243 g..keraperiaeerarlldaladyhkylagkrvavygggdlavalarllkelGmevvaagtetahrddeerlkaelkeg.epevidd 327
                 +       e++a+e+a+ ++ + dy  +l+  ++a+ + + + +ala ++ +l  + ++a+   +++  eer+   ++++ e + + d
  MMETSP0890-20130614|1628_1 276 DqlSLLYTEQVAKETAKFEEPMYDYIRVLGAVKAALNARAKHKHALALACVDLDNKKALAAKLAGQPGKEERAAL-AEHAvE-KAHAD 361
                 3542234789*************************************************9999999998875554.222211.22222 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.9    0.0001       0.2     503     634 ..     272     396 ..     251     409 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0001
   PF04632.7 503 ralrrdlarlaagraaeararfesrmldrlaqlaprla..aapaasraalrdalaalrvgravlrLrralara..lpaparaaidavlaalafraraaarkerrlaapaalldaldaalaalaadpaaaalrrala 634
                  ++ ++l  l + + a++ a+fe  m+d +  l+++ a  +a+a++++al  a  +l+  +a+    + +  +   +a a  a++++ a++a          ++++a+++ ++++ + ++++ ++ a++  rr+++
  MMETSP0890-20130614|1628_1 272 GHTADQLSLLYTEQVAKETAKFEEPMYDYIRVLGAVKAalNARAKHKHALALACVDLDNKKALAAKLAGQPGKeeRAALAEHAVEKAHADVA----------HARDAFERVSARVIREMERFKREKANDI-RRVVL 396
                 56778888888888899999******************788888888888888888888888877777777667666666677888888888..........7777999999999999999999999998.66554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:00.90
# Mc/sec: 1248.77
//
Query:       MMETSP0890-20130614|1630_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-184  614.5   0.8   5.6e-183  608.9   0.5    2.0  1  PF00012.15 Hsp70 protein
    9.8e-18   63.6   0.1    6.1e-14   51.2   0.0    3.2  3  PF06723.8  MreB/Mbl protein
    0.00094   18.8   2.5        1.2    8.8   0.0    4.3  5  PF14450.1  Cell division protein FtsA
     0.0068   15.4   0.4       0.99    8.3   0.0    3.5  4  PF01968.13 Hydantoinase/oxoprolinase
  ------ inclusion threshold ------
       0.03   13.0   0.1       0.15   10.7   0.1    2.0  2  PF08841.5  Diol dehydratase reactivase ATPase-like domain
      0.056   12.8   0.0       0.12   11.7   0.0    1.5  1  PF02776.13 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
      0.071   11.9   0.0       0.37    9.5   0.0    2.0  2  PF06406.6  StbA protein
       0.11   12.3   3.3       0.12   12.1   0.3    2.1  2  PF06193.6  Orthopoxvirus A5L protein-like


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  608.9   0.5  3.3e-186  5.6e-183       1     548 [.      19     607 ..      19     642 .. 0.88

  Alignments for each domain:
  == domain 1    score: 608.9 bits;  conditional E-value: 3.3e-186
                 EEXEEXXXXEEBXEEEXXX..XEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEET.TTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS......XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX..XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHH...............HH....HSS...XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX..XXEEXSSXTTTTTTXXXTTCHHHCSSS..........SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00012.15   1 viGiDLGttnsvvavmegg..kvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkke.ngkavvevealgekkkftpeeisamvLkklketaeaylgek.....vtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd.kernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveef...............kk....kegi..dlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg..kepsksvnpDeavAiGaAvqaavlsge..........eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkle 548
                 ++GiDLGtt+s+vav +++  +v v+an+eg+rttPs+++Ft++ +rl+G +Ak+qa++n+k t+++vkr++Gr+ +dp++++e++ l+y+v+ ++ ++++++e++ +ge+k+++pee+samvL++++++a ay ge+     ++ avitvPa+Fnd+qRqatkdAgkiAGLnv+Ri+neptaaalaYGl++ + +   vl+fDlGggtfdvS+l++edGvf vkat gDthlGG+dfD+al+e++++++               kk    +++i  +++k ++ ++rL  aae  Kk+LS +++t+i++++   +    dl  +++R+ fee +++l+er+++ v+++++dak++ +++ e vlvGGstR+P++q+++++lf+   e++k v+pDeavA+GaAvq+ +l+                dl+llDvtpLslgie++gg m++l++r t ip  k++ ++t++d qt++++ v++ger +++ n +lg+f ++gi+ a +G+p+ieVtf +da+Gil+vsakd+ tg + +++i+a++g ls+++ie+m+keae+ +++d   ++++  +n le+ v  +++k +
  MMETSP0890-20130614|1630_1  19 ILGIDLGTTYSCVAVYDEKikEVVVLANSEGSRTTPSYIGFTENgQRLIGMSAKQQAASNAKCTIYDVKRILGRTIDDPVLEDEKRRLSYNVILDTvKRRPMIEIAWQGETKRYAPEELSAMVLSEMRTIALAYFGEEensekLKRAVITVPAHFNDQQRQATKDAGKIAGLNVVRIINEPTAAALAYGLHDAQaRRPCVLIFDLGGGTFDVSVLSMEDGVFAVKATGGDTHLGGQDFDQALAEFILARYasitlknrkncpkdlKKqrdeERKIanEIKKRDNIFRRLILAAENSKKNLSIAENTQIRIPLWDDK---DDLVVDIQRQDFEECCNELFERCISTVRQVINDAKFSLDDVTECVLVGGSTRVPALQQKLRSLFNnrLELCKHVHPDEAVAYGAAVQGSILRAGgtggaqdlapAICGDLVLLDVTPLSLGIELEGGQMSTLVKRGTPIPCAKTREYTTVDDFQTSIDVVVYEGERPVVSGNTKLGEFLINGIERARKGEPKIEVTFTLDADGILKVSAKDRVTGASASTQIKADRGrLSDEDIESMIKEAERLRQQDLDYASRTTFRNALEQGVLLAKQKNS 607
                 58**************88522777899****************************************************************9876527899******************************999987656666***********************************************999956678**********************************************998763333322111111112111111223334566667899999************99999999986433...59**************************************************************975599*********************865567776665555789*********************************************************************************************************************************************************98876665544 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.034        58       4      31 ..      20      45 ..      17      76 .. 0.72
   2 !   51.2   0.0   3.6e-17   6.1e-14      89     226 ..     158     301 ..     140     326 .. 0.80
   3 !    6.5   0.0    0.0014       2.4     235     316 ..     339     419 ..     334     426 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.034
                E--B----EEEE--------EEEES-EE CS
   PF06723.8  4 lgiDLGtantlvyvkgkgivlnepsvvA 31
                lgiDLGt+   v v ++ i  +e  v+A
  MMETSP0890-20130614|1630_1 20 LGIDLGTTYSCVAVYDEKI--KEVVVLA 45
                89********999988875..4555555 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 3.6e-17
                 --SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS--..--EEEE-----EEEEEE----EEEEEE.....ES----HHHHHHHHHHHHHHSB----HHHHHHHHH----S--HHHH-EEE---B CS
   PF06723.8  89 kslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveeps..gnmvvdiGggttevavislggivtsks.....vrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrd 226
                 +s + +r vi+vP + ++ +r+A k+a k aG + v +i+ep aAA+  gl  ++++    ++ d+Gggt +v+v+s+ + v +        +++G+++d+a+ ++i  +y   i  ++ ++  +++ +   ee++   eik rd
  MMETSP0890-20130614|1630_1 158 NSEKLKRAVITVPAHFNDQQRQATKDAGKIAGLNVVRIINEPTAAALAYGLHDAQARrpCVLIFDLGGGTFDVSVLSMEDGVFAVKatggdTHLGGQDFDQALAEFILARYA-SITLKNRKNCPKDLKKQRDEERKIANEIKKRD 301
                 34466899*******************************************9887763367999**************9877654312222689***************997.45555666666666666655555566666555 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0014
                 EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-----EE-S..STTTTTT---- CS
   PF06723.8 235 vevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvae..dpltcvakGtg 316
                 v ++ ++ +e+ +e +++ +++v++v+++++  L  d+++   vl+GG++ +  l++ l++ ++ + ++ +  +p ++va G++
  MMETSP0890-20130614|1630_1 339 VDIQRQDFEECCNELFERCISTVRQVINDAKFSL-DDVTE--CVLVGGSTRVPALQQKLRSLFNNRLELCKhvHPDEAVAYGAA 419
                 67899999********************998887.46665..5778**********9999988776666652268999999976 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00069       1.2       1      27 [.      19      44 ..      19     125 .. 0.84
   2 ?    2.5   0.0     0.064   1.1e+02      15      68 ..     141     193 ..     134     210 .. 0.80
   3 ?    3.9   0.0     0.023        39       1      30 [.     218     246 ..     218     278 .. 0.87
   4 ?   -2.3   0.0         2   3.5e+03      89      89 ..     353     353 ..     284     409 .. 0.58
   5 ?   -2.0   0.0       1.6   2.8e+03       9      30 ..     489     510 ..     488     521 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00069
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF14450.1  1 valvDiGagktdvavaekgklgelrvi 27
                ++++D+G++ ++vav+ + k++e+ v+
  MMETSP0890-20130614|1630_1 19 ILGIDLGTTYSCVAVYDE-KIKEVVVL 44
                579**************9.77765554 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.064
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF14450.1  15 vaekgklgelrvigvGeqksrgikgghItdiddiakalktaveeAeriaklkig 68 
                 v  +    +l+ +g   ++s+ +k+ +It  ++     ++a ++A +ia+l++ 
  MMETSP0890-20130614|1630_1 141 VLSEMRTIALAYFGEE-ENSEKLKRAVITVPAHFNDQQRQATKDAGKIAGLNVV 193
                 5555555555555555.7889***************************999875 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.023
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF14450.1   1 valvDiGagktdvavaekgklgelrvigvG 30 
                 v++ D+G+g+ dv+v  + ++g ++v ++G
  MMETSP0890-20130614|1630_1 218 VLIFDLGGGTFDVSVLSM-EDGVFAVKATG 246
                 5678*************9.99999999998 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 2
                 x RF
   PF14450.1  89 a 89 
                  
  MMETSP0890-20130614|1630_1 353 L 353
                 2 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 1.6
                 xxxxxxxxxxxxxxxxxxxxxx RF
   PF14450.1   9 gktdvavaekgklgelrvigvG 30 
                 +++dv+v+e++ ++      +G
  MMETSP0890-20130614|1630_1 489 TSIDVVVYEGERPVVSGNTKLG 510
                 789******9998888777777 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.96   1.6e+03     156     179 ..      75      98 ..      11     126 .. 0.57
   2 !    8.3   0.0   0.00058      0.99      62      96 ..     200     235 ..     155     251 .. 0.79
   3 ?    2.5   0.0     0.034        58     208     283 ..     316     420 ..     261     426 .. 0.58
   4 ?   -0.5   0.0      0.27   4.5e+02      86     111 ..     488     512 ..     476     515 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.96
  PF01968.13 156 rkGgepltvtDanlvlgklqpedf 179
                 +  + + t+ D++ +lg+   + +
  MMETSP0890-20130614|1630_1  75 AASNAKCTIYDVKRILGRTIDDPV 98 
                 333445566666666666655555 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00058
  PF01968.13  62 Paagvvgaaa.elaglknaivvDvGGTstDvalisd 96 
                  aa +    +  +a+   ++++D GG ++Dv+++s 
  MMETSP0890-20130614|1630_1 200 TAAALAYGLHdAQARRPCVLIFDLGGGTFDVSVLSM 235
                 455555555556666666778***********9874 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.034
  PF01968.13 208 k.................................veevaegllsvagetmadairvlsvqrgkdkkelplvlfGGa..gplhaaelaeelgak.evipeeyagvlsAvGall 283
                 k                                  +e+ e+++s + + ++da   l      d     +vl+GG+  +p++ ++l+++++ + e   + +++ + A+Ga++
  MMETSP0890-20130614|1630_1 316 KnlsiaentqiriplwddkddlvvdiqrqdfeecCNELFERCISTVRQVINDAKFSL-----DD--VTECVLVGGStrVPALQQKLRSLFNNRlELCKHVHPDEAVAYGAAV 420
                 155555555566666666666666665445222223334444444444444444444.....34..4445555555226899999999998864788888999999999997 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.27
  PF01968.13  86 GTstDvalisdgepelseegevvggv 111
                  Ts Dv +++ ++p +s +++  g++
  MMETSP0890-20130614|1630_1 488 QTSIDVVVYEGERPVVSGNTKL-GEF 512
                 5*********999999988877.665 PP

>> PF08841.5  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.7e-05      0.15     125     164 ..     207     246 ..     171     251 .. 0.74
   2 ?   -1.1   0.0      0.33   5.6e+02     269     287 ..     368     386 ..     350     403 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.7e-05
   PF08841.5 125 GalttPGtakplailDlGaGstDasiinkegkvtavhlaG 164
                 G        + + i DlG+G+ D s+++ e+ v av+  G
  MMETSP0890-20130614|1630_1 207 GLHDAQARRPCVLIFDLGGGTFDVSVLSMEDGVFAVKATG 246
                 444455555667799********************87766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.33
   PF08841.5 269 PtgnirdiefvvlvGGsal 287
                    ++ d++  vlvGGs+ 
  MMETSP0890-20130614|1630_1 368 AKFSLDDVTECVLVGGSTR 386
                 3446889*********974 PP

>> PF02776.13  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.9e-05      0.12      19      76 ..     166     227 ..     155     231 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.9e-05
                 EB------SHHHHHHHHH-....--EE----STTT---HHHH----S.S----EE--S---- CS
  PF02776.13  19 vfgvpgssilplldalaked...girlvlarhEqgaafaAdgyarat.gkpgvvlvtsgpGa 76 
                 v +vp + + +  +a ++++   g+++v+  +E +aa+ A g + a+ ++p+v++   g G+
  MMETSP0890-20130614|1630_1 166 VITVPAHFNDQQRQATKDAGkiaGLNVVRIINEPTAAALAYGLHDAQaRRPCVLIFDLGGGT 227
                 77888888888888999998999**********************99899999998888775 PP

>> PF06406.6  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00022      0.37     165     245 ..     217     303 ..     177     327 .. 0.68
   2 ?   -0.7   0.0      0.28   4.8e+02     231     284 ..     333     386 ..     309     405 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00022
                 -EEEEE------EEEEE-..-------EEE--TT---HHHHHHHHHHTT-....-SB---HHHHHHHHHTTT-HHHHHHHSSSHHHH CS
   PF06406.6 165 slLivDlGGttLDvakvl..gklegiskvkgdskiGvslvtdavkealet....astktsslladeliknRndeeylkqlindedkr 245
                  +Li DlGG t Dv+ +     +  + ++ gd ++G     +a+ e +       ++k  + + ++l k+R++e  + + i++ d++
  MMETSP0890-20130614|1630_1 217 CVLIFDLGGGTFDVSVLSmeDGVFAVKATGGDTHLGGQDFDQALAEFILAryasITLKNRKNCPKDLKKQRDEERKIANEIKKRDNI 303
                 579***********9654113455677778999999988877776654331211455666777888999999988888777666553 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.28
                 -HHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----EEEEE----T CS
   PF06406.6 231 deeylkqlindedkrdsvlevineavkkLkerviralsefsevtrvmvvGGGae 284
                 d++ l   i+ +d  +   e  ++ + ++++ +++a  ++++vt  ++vGG + 
  MMETSP0890-20130614|1630_1 333 DKDDLVVDIQRQDFEECCNELFERCISTVRQVINDAKFSLDDVTECVLVGGSTR 386
                 555555556666666666666666666666666666677777777777777655 PP

>> PF06193.6  Orthopoxvirus A5L protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.32   5.4e+02      34      71 ..     289     340 ..     255     398 .. 0.59
   2 ?   12.1   0.3   7.2e-05      0.12      22     100 ..     552     630 ..     537     640 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.32
   PF06193.6  34 kdeaieigLkskEsyYQrqlreQL.ardnmlkisrqpi.............p 71 
                 ++ +i   +k +++++ r +      ++n+  +++++i              
  MMETSP0890-20130614|1630_1 289 EERKIANEIKKRDNIFRRLILAAEnSKKNLSIAENTQIriplwddkddlvvD 340
                 2233444566666666665544330344444444444444444444443332 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 7.2e-05
   PF06193.6  22 iyyseekdpdtkkdeaieigLkskEsyYQrqlreQLardnmlkisrqpiprqqtntssdvsnlfdwlsadtnkksssll 100
                 ++++ + d     de+ie ++k+ E++ Q+ l    +     + ++ +   +q+n+s   +++ dwl+ d+++ s+  l
  MMETSP0890-20130614|1630_1 552 ASTQIKADRGRLSDEDIESMIKEAERLRQQDLDYASRTTFRNALEQGVLLAKQKNSSPALEDMLDWLDLDATDASMADL 630
                 34444566667789*****************965544444444455566677******************997766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.19u 0.45s 00:00:01.64 Elapsed: 00:00:01.03
# Mc/sec: 1516.92
//
Query:       MMETSP0890-20130614|1623_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-42  138.9  53.7      4e-07   29.2   0.1    9.4  9  PF02493.15 MORN repeat
    5.5e-10   39.7   0.2    2.9e-09   37.3   0.0    2.3  2  PF00188.21 Cysteine-rich secretory protein family
  ------ inclusion threshold ------
      0.067   12.8   0.0       0.13   11.9   0.0    1.4  1  PF09079.6  CDC6, C terminal


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.021        98      13      22 ..      26      35 ..      18      36 .. 0.83
   2 !   13.4   0.5   9.4e-06     0.043       1      21 [.      37      57 ..      37      57 .. 0.99
   3 !   23.5   1.7   5.7e-09   2.6e-05       1      22 [.      60      81 ..      60      82 .. 0.97
   4 !   22.1   0.3   1.6e-08   7.1e-05       1      22 [.      83     104 ..      83     105 .. 0.95
   5 !   23.1   0.1   7.5e-09   3.4e-05       1      22 [.     106     127 ..     106     128 .. 0.97
   6 !   13.8   0.6   6.8e-06     0.031       1      21 [.     129     149 ..     129     151 .. 0.95
   7 !   29.2   0.1   8.7e-11     4e-07       1      22 [.     152     173 ..     152     174 .. 0.96
   8 !   17.8   1.2   3.8e-07    0.0018       1      21 [.     175     195 ..     175     197 .. 0.91
   9 !   25.7   1.2   1.1e-09   5.1e-06       1      21 [.     198     218 ..     198     220 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.021
                EEEB------ CS
  PF02493.15 13 kGvytwpdGd 22
                 G+ ++pdG+
  MMETSP0890-20130614|1623_1 26 EGKIQFPDGS 35
                79*******8 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.4e-06
                EE-EEETTEEE-EEEB----- CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdG 21
                YeG   +Gk+hG G++ ++dG
  MMETSP0890-20130614|1623_1 37 YEGGLFEGKMHGDGRLEFADG 57
                9*******************9 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 5.7e-09
                EE-EEETTEEE-EEEB------ CS
  PF02493.15  1 YeGeWknGkrhGkGvytwpdGd 22
                Y G W++G++hG+G++ + +Gd
  MMETSP0890-20130614|1623_1 60 YTGSWQKGQMHGSGHLEYKTGD 81
                9********************8 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 1.6e-08
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y+Ge+ +G++hG+G+++  +G 
  MMETSP0890-20130614|1623_1  83 YIGEFFEGMKHGSGKFVGINGA 104
                 9****************99996 PP

  == domain 5    score: 23.1 bits;  conditional E-value: 7.5e-09
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG+Wk++   GkG+ ++pdG 
  MMETSP0890-20130614|1623_1 106 YEGDWKRDVITGKGKIIYPDGH 127
                 *********************7 PP

  == domain 6    score: 13.8 bits;  conditional E-value: 6.8e-06
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y Ge+ +  +hG+G +++++G
  MMETSP0890-20130614|1623_1 129 YHGEFLDADKHGQGECWYANG 149
                 99******************9 PP

  == domain 7    score: 29.2 bits;  conditional E-value: 8.7e-11
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y GeW+++krhGkG++++++G 
  MMETSP0890-20130614|1623_1 152 YKGEWSHNKRHGKGILIYASGA 173
                 9*******************96 PP

  == domain 8    score: 17.8 bits;  conditional E-value: 3.8e-07
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+G+W++Gk +G G y +p G
  MMETSP0890-20130614|1623_1 175 YDGDWVQGKYQGIGSYLYPCG 195
                 9*****************955 PP

  == domain 9    score: 25.7 bits;  conditional E-value: 1.1e-09
                 EE-EEETTEEE-EEEB----- CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+G+++++k+hG+G+ytw +G
  MMETSP0890-20130614|1623_1 198 YIGDFSDDKKHGNGIYTWGSG 218
                 9******************99 PP

>> PF00188.21  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3      0.64   2.9e+03      97     111 ..     180     194 ..     129     216 .. 0.60
   2 !   37.3   0.0   6.3e-13   2.9e-09      15     124 .]     400     511 ..     363     511 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.64
  PF00188.21  97 lwakytkvGcavatc 111
                 +++ky+ +G   + c
  MMETSP0890-20130614|1623_1 180 VQGKYQGIGSYLYPC 194
                 234444444444444 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 6.3e-13
  PF00188.21  15 pplkwdptLekaAqdhakdcak....sgyfshnsgenlaisersgkikdpedaavenwydeakdydkak.slvlndwkssvghytnilwakytkvGcavatcgdgssgfyvvcny 124
                 +pl  d +L++aA +h +d++      +  +h+  ++  + +r ++ ++   + +en+ + +++  ++  sl ++d+ +s+ h++nil++k+t +Gc+  t ++g+  +++v ny
  MMETSP0890-20130614|1623_1 400 APLDLDYALSRAASEHCRDLCTrgivDNTEEHTGFDGSNLLTRIQRHGSVLHS-AENITNTHNHHVDIVlSLLIDDGLPSRSHRKNILDPKFTTIGCSPCTPSSGK--YITVFNY 511
                 569*******************8888777777777777777777776555444.9999999999999999*******************************99997..9999988 PP

>> PF09079.6  CDC6, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.8e-05      0.13      29      73 ..     399     442 ..     396     452 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.8e-05
                 HHHTT-----HHHHHHHHHHHHH---EEEEEE----.---EEEEE CS
   PF09079.6  29 CeelgvdpltqrrisdllseLemlgiietrevskGrgrGrtkeis 73 
                 C+ l+ d    r +s+++++L ++gi++  e++ G  +G + + +
  MMETSP0890-20130614|1623_1 399 CAPLDLDYALSRAASEHCRDLCTRGIVDNTEEHTG-FDGSNLLTR 442
                 66677777788999********************9.477665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.88
# Mc/sec: 1418.75
//
Query:       MMETSP0890-20130614|1633_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-28   97.7   0.0    8.6e-28   97.0   0.0    1.3  1  PF02797.10 Chalcone and stilbene synthases, C-terminal domain
    5.6e-24   84.5   0.0    7.7e-24   84.0   0.0    1.1  1  PF00195.14 Chalcone and stilbene synthases, N-terminal domain
    3.9e-13   49.0   0.0    6.3e-13   48.3   0.0    1.4  1  PF08392.7  FAE1/Type III polyketide synthase-like protein
    2.9e-08   33.4   0.0    6.3e-08   32.4   0.0    1.6  1  PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
    3.8e-05   23.1   1.0    8.9e-05   21.9   0.7    1.6  1  PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III


Domain annotation for each model (and alignments):
>> PF02797.10  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   3.2e-31   8.6e-28       8     148 ..     272     411 ..     266     413 .] 0.95

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 3.2e-31
                 EE-TT-CCCEEEE--------EE-TTHHHHHHHHHHHHHHHHHTT-----GGGS--EE-----HHHHHHHHHCT--TTTTHHHHHHHHH----GGGHHHHHHHHHHHHHHH----B---------EE------EEEEEEEE CS
  PF02797.10   8 tllpdsegaikgklreeGltfkllkdvpeliskniekalkealeklgisdwnslfWiahpGGpaildqveakleLkpeklkasrevlseyGnlssacvlfildelrkkslkegkkttgeGlewGvllgfGPGltvetvvlr 148
                  l+  +e  i+  ++e+G+   l+k +p+ i+kn+   +++ l+k ++++ +  fW++hpGG+ i+++ ++ l+L++e+ k+s +vls+yGn+ s +v+f+l+ + + + k++ ++   Gl+ G+ ++f PG+  e+v+++
  MMETSP0890-20130614|1633_1 272 CLMEGTEDGITLSINENGISCILSKYLPQYIAKNMGGYVESFLAKHALQKSDLDFWAIHPGGRRIIEEAQNGLGLSEEQAKYSWTVLSQYGNMLSPSVMFVLELILN-DHKKELAKGNRGLKQGIAFSFSPGVGAEGVLIK 411
                 578889999****************************************99999**************************************************997.7888899999*********************98 PP

>> PF00195.14  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   2.8e-27   7.7e-24      15     225 ..      40     253 ..      28     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 2.8e-27
                 --EE-B------S-EEEHHHHHHHHHHHTT-TT-HHHHHHHHHHHHHT---EEE-S-...-HHHHHHSGGGTSTTSS-....HHHHHHHHH--------HHHHHHHHH----GGG--EEEEE-----EE---HHHHHHH----TT-EEEEE----------HHHHHHHHHHH-----EEEEE---GGGG-----TTSHHHHCHHHH-----EEEEE.-- CS
  PF00195.14  15 katilaiGtatPsnvveqskypdyyfrvtksehltelkekfkrlcekstikkrylvl...teeiLkenpelceekaps....ldarqdivvaevpklgkeaaekaikeWgqpkskithlvfvttsgvdlpGaDyqltklLGLspsvkrvmlyqqGCfaGgtvLrlakdlaennkgarvLvvcseitvvtfrgPseerldslvgqaLfgDGaaaviv.Ga 225
                    il + t++P+  v+q++         ++ +  ++k  + r+  +s i  ry+ +   t e   + +e+   k++s    +++r d++ ++   l ++ +++a+++   + + i  lv v+++g+  pG D++l+k+LGLs sv r  + + GC a   ++r+a d a  n+g   L+ c ei+ v  ++  ++++++ + +a+f+DG+aa ++ G 
  MMETSP0890-20130614|1633_1  40 YPVILGMATGNPPYRVSQQEALA---IAESCPDCGSIKPVLARIYGNSRIDYRYMAVpdfTPEQAIKGDEIFFPKDKSfkmpVEKRLDMFREKAIPLVTRVCKAALEDAKIAPELIGKLVVVSSTGFLGPGLDCELIKTLGLSRSVDRSLIGFMGCAAAMNGFRVANDYAVANPGKLALMCCVEISSV--HTTFDDNVNDAILHAIFADGCAAAVIsGE 253
                 55789999999999999886544...4667888899*******************863336677778888887777762222578***************************************************************************************************9876..5778999999999*******776665154 PP

>> PF08392.7  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   2.3e-16   6.3e-13      57     224 ..     103     270 ..      74     319 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 2.3e-16
   PF08392.7  57 lgeetyvPr.slleipeektlaeareEaeevlfgavdellaktkvkpkdigilvvncslfsptPslsamvvnryklredvksynLsGmGCsaglisidlakdllqvhkntlalvvstEnitlnwYvGnersmllsnclFRvGgaavllsnksadrrrakykLvhvvRth 224
                  g+e ++P+ + +++p ek l   re a  +++ + +  l+ +k+ p+ ig lvv +s+    P l   ++++ +l + v    ++ mGC+a++ +  +a+d   +++++lal+   E+ ++++ + ++ +  +  ++F  G+aa+++s ++    rak k   ++ th
  MMETSP0890-20130614|1633_1 103 KGDEIFFPKdKSFKMPVEKRLDMFREKAIPLVTRVCKAALEDAKIAPELIGKLVVVSSTGFLGPGLDCELIKTLGLSRSVDRSLIGFMGCAAAMNGFRVANDYAVANPGKLALMCCVEISSVHTTFDDNVNDAILHAIFADGCAAAVISGEKPGAPRAKGKFG-IIDTH 270
                 589999997357899999***********************************************************************************************************************************99998888887754.44555 PP

>> PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.3e-11   6.3e-08       1      78 [.     314     396 ..     314     412 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.3e-11
                 HHC--------SEEEE--S-HHHHHHHHHH----TT..EE--GG.GT----TTHHHHHHHHHHHC--..-------EEEE--- CS
   PF08541.5   1 Lekagltpedidwfvphqanlriidavakrlglpee..kvvvnl.deyGntsaasiplaLdeaveeg..klkpgdlvllvgfG 78 
                 L+k+ l+++d+d+  +h   +rii+++ + lgl+ee  k+ +++  +yGn+ + s++  L+  ++++  +l++g++ l  g++
  MMETSP0890-20130614|1633_1 314 LAKHALQKSDLDFWAIHPGGRRIIEEAQNGLGLSEEqaKYSWTVlSQYGNMLSPSVMFVLELILNDHkkELAKGNRGLKQGIA 396
                 78999******************************9999999999****************9998775588899887766544 PP

>> PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.7   3.3e-08   8.9e-05       6      68 ..     191     256 ..     189     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.3e-08
                 TT---HHHHHHHHHHHH------EEEEE---GGGGS-TT-....TTTTTT-------EEE--BS--- CS
   PF08545.5   6 aCsgfvyalsvAaaliesgaaknvLvvgaetlsrildwkd....rstavlfGDGAgAvvleaseeeg 68 
                 +C++++ +  vA+++  ++  k +L+++ e+ s ++ ++d       + +f+DG++A+v++ + ++g
  MMETSP0890-20130614|1633_1 191 GCAAAMNGFRVANDYAVANPGKLALMCCVEISSVHTTFDDnvndAILHAIFADGCAAAVISGE-KPG 256
                 7********************************9888865432266677***********985.343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.79
# Mc/sec: 1252.78
//
Query:       MMETSP0890-20130614|1634_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.26   10.9  42.5      0.074   12.6   1.6    8.0  8  PF00612.22 IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3    0.0033        45       1      19 [.     174     192 ..     174     194 .. 0.86
   2 ?   -0.6   0.3     0.095   1.3e+03       3      18 ..     204     219 ..     203     220 .. 0.87
   3 ?    5.5   0.4     0.001        14       4      21 .]     226     243 ..     223     243 .. 0.90
   4 ?    0.5   0.8     0.042   5.8e+02       2      14 ..     249     261 ..     248     263 .. 0.86
   5 ?   -2.0   0.1      0.27   3.7e+03      11      16 ..     318     323 ..     317     324 .. 0.88
   6 ?    9.0   0.2   7.8e-05       1.1       2      19 ..     480     497 ..     479     499 .. 0.88
   7 ?    4.9   0.0    0.0016        22       4      19 ..     512     527 ..     511     529 .. 0.88
   8 ?   12.6   1.6   5.4e-06     0.074       3      17 ..     534     548 ..     532     551 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHCH CS
  PF00612.22   1 rkaaikIQaawRgylaRkr 19 
                 r+aa+k+Q  +R +la  +
  MMETSP0890-20130614|1634_1 174 RDAALKLQMLIRYWLAMVQ 192
                 68**********9999765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.095
                 HHHHHHHHHHHHHHHC CS
  PF00612.22   3 aaikIQaawRgylaRk 18 
                 aa++I  ++R y++ +
  MMETSP0890-20130614|1634_1 204 AACIIGLYFRKYQVQR 219
                 78999999****9988 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHCHCH CS
  PF00612.22   4 aikIQaawRgylaRkryk 21 
                 +++ Q+++R   aR +++
  MMETSP0890-20130614|1634_1 226 VMRVQSQVRTKFARHQFQ 243
                 6789***********996 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHH CS
  PF00612.22   2 kaaikIQaawRgy 14 
                 +aa  +Q+ +R  
  MMETSP0890-20130614|1634_1 249 RAARFLQRIIRKK 261
                 89*********75 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 0.27
                 HHHHHH CS
  PF00612.22  11 wRgyla 16 
                 +Rg+la
  MMETSP0890-20130614|1634_1 318 IRGFLA 323
                 8****8 PP

  == domain 6    score: 9.0 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHHHHHHHHCH CS
  PF00612.22   2 kaaikIQaawRgylaRkr 19 
                 +++i +Q+++Rg + R r
  MMETSP0890-20130614|1634_1 480 ESIIYLQSWIRGIQIRHR 497
                 589*********999977 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHCH CS
  PF00612.22   4 aikIQaawRgylaRkr 19 
                 a+k+ a +R+y aR  
  MMETSP0890-20130614|1634_1 512 ATKLSASCRAYSARST 527
                 89************76 PP

  == domain 8    score: 12.6 bits;  conditional E-value: 5.4e-06
                 HHHHHHHHHHHHHHH CS
  PF00612.22   3 aaikIQaawRgylaR 17 
                 aai+IQ+a+R+ +aR
  MMETSP0890-20130614|1634_1 534 AAIIIQSAFRCKRAR 548
                 9*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.98
# Mc/sec: 1931.76
//
Query:       MMETSP0890-20130614|1638_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:01.07
# Mc/sec: 602.45
//
Query:       MMETSP0890-20130614|1635_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 408.39
//
Query:       MMETSP0890-20130614|1639_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-18   65.8   0.0    6.8e-18   64.8   0.0    1.5  1  PF08450.7  SMP-30/Gluconolaconase/LRE-like region
  ------ inclusion threshold ------
      0.021   14.6   0.3       0.12   12.2   0.1    2.5  2  PF01436.16 NHL repeat


Domain annotation for each model (and alignments):
>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   9.9e-22   6.8e-18       1     243 [.      60     344 ..      60     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 9.9e-22
   PF08450.7   1 lgEgpvwdeeegaLywvDilgqrlhrldpatgketv........ldlpe.......svgaiapvkd.grlivaskrglall..dlasgelttladlee.dekplnrfNDgkvdpdGrlwfGtmgdeeakgkev.............................galyrldpd.gklervlddltisNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvf.idlkkgegepDGlavDa.eGnvwvAvwgggkvvridpd.GklleeiklPakrvtscafGGadlrtLyit 243
                 ++Egp+w +++++Ly++D   q ++++++ +g + v        +   +        +g+ +  k+   ++v+++++++++  d+ + ++t+++++e+  + +ln++ND+ v ++ ++ f+++ ++   +++                               a+yr+d + g+++++ + l+ +NG+a+  d+  +     ++++++af++  +g+ +       ++l  g g+ DG++ D  +  +w+     g+++ id d  + +++++l    v+++af    ++ Ly+t
  MMETSP0890-20130614|1639_1  60 WTEGPLWSKKRKTLYFTDTIDQVIYTWNEYDGIQIVaiesggdtI---SdeyfergANGLSWFDKQeTAILVCQHGSRRVVkiDVGTMKITQIMAKETpRNRSLNSPNDVIVYDN-SILFTDPPYGLLLKDDDsrfalntpkglpadqpyveklvreigagvHAVYRVDMSsGQITELTSALNRPNGLAVIDDSLWVANSALHNGSWTAFNLT-TGNIIRHFP-YpTNLVMGRGVVDGFIFDPnTRLLWSS--APGGIIAIDIDqARPVAAYRLG-VPVSNLAF-DDTRSFLYVT 344
                 89**********************************666665550...0555644577777764445999**********98888888******9966666699******99765.6*******998877777789************************999****************************9987766666667779999994.455344444.4488888889*********66667888..6688999998878889999999.77999999.5777889998 PP

>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.83   5.7e+03       1       9 [.     160     168 ..     160     172 .. 0.72
   2 ?   12.2   0.1   1.8e-05      0.12       1      23 [.     237     258 ..     237     260 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.83
                 -SSBEEEEE CS
  PF01436.16   1 lnnPhGvav 9  
                 ln+P++v v
  MMETSP0890-20130614|1639_1 160 LNSPNDVIV 168
                 678888865 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.8e-05
                 -SSBEEEEE-TT--EEEEEGCCT CS
  PF01436.16   1 lnnPhGvavdsdGdvyVaDsenh 23 
                 ln+P+G+av  d++++Va+s  h
  MMETSP0890-20130614|1639_1 237 LNRPNGLAV-IDDSLWVANSALH 258
                 79*******.5*******97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.69
# Mc/sec: 1215.54
//
Query:       MMETSP0890-20130614|1643_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   10.8   0.1      0.085   10.7   0.0    1.1  1  PF06060.7 Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)


Domain annotation for each model (and alignments):
>> PF06060.7  Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.2e-06     0.085     526     575 ..     117     166 ..      52     169 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.2e-06
   PF06060.7 526 kklrvdalvglsvaevqkllgphiedlkteedkspvrdwllrqrqkdlds 575
                 k+lr+d+ ++l+ ae  k     +edl   edk+p  +   r+ ++d+d+
  MMETSP0890-20130614|1643_1 117 KRLRADSNISLTAAETGKDGSKVVEDLIEYEDKQPTTETQNRDDDDDVDE 166
                 89*****************9999*****************9*99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 614.07
//
Query:       MMETSP0890-20130614|1651_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 748.45
//
Query:       MMETSP0890-20130614|1648_1  [L=974]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-92  309.8  12.0    2.9e-92  309.5   8.3    1.1  1  PF04547.7 Calcium-activated chloride channel


Domain annotation for each model (and alignments):
>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.5   8.3   2.1e-96   2.9e-92       1     452 []     176     652 ..     176     652 .. 0.84

  Alignments for each domain:
  == domain 1    score: 309.5 bits;  conditional E-value: 2.1e-96
   PF04547.7   1 irdyFGekialYFawlgfytksllypavlGlilfllglsadqtfdnil.....tvvfalfnvlwatlflelWkrreaelaykWgtldveeeqeeprpqFkgekk...ridpitgeeepyyppwkrllrrlvslpvvllcivlvfllmlgvfelrelvseikeakekptlasflpkilnavlitilnevYkklAkwltdlEnhrtqseyensliiKvflfqfvnsylslfyiaFfkk..lrqeecks..dlerLkeqlatllitkqll..qnitevllPylkerlrkvkvkekkeeksed.....................ese...........keeeekesleqaekeselqtyevsgtfddylemviqfGyvvLFsaafPlapllalinniieirsdafklltelrRpvpqraesIGqWqkilellgvlavitNafliaftsdgqlqrllndlslaarlllvvvlehvvlllkyliavlipdi.pewvreelkreey 452
                 +r yFGekia+YFaw+gfy  sl++pa++ +i+ ++ l  ++ +d+++      ++ a+f+v wa+ +   W  +e+  a+kWgt d+e eqe  rpqF g++    r +pit e+e +yp+ kr++ r++s+++++l++ +++++++++fe++ +v+++      + +a+ l  il+++li+i++++Y+++A++l++ En+rt+++yen+liiK+f f+++n+y+ l ++a+ k+  + +  + s  +l + k+ l+ ++ t+  +  + ++   +   + r       ++ ++k++d                       +           ++ +   +l+ +e e el++y+  gtfddy e+v+q+G+v++F   + l p+++++  +++ir+da+kl+ ++rRp p+ aes+ +W   + ++g+la++++a++i+ t      r +++++l  ++l++++l+h++l+++ +i++ ++ + p++++e +kr++y
  MMETSP0890-20130614|1648_1 176 VRAYFGEKIAFYFAWVGFYGYSLVLPAIIAFICEIYLLV-TYGSDESAkfhfdQLILAFFIVYWAARYKIAWDTEEKFCAIKWGTVDFE-EQEVDRPQFFGDVDqprRLSPITYENETFYPEEKRQVTRCFSFFLIILAVGVLLSVIILLFEIQYIVYDAG----LRFIAE-LFPILQSILIQICSQAYTSVATYLNETENYRTETNYENNLIIKKFSFEIFNNYSALAITAYCKNifF-TCTFGSnnCLADTKYLLIAIVATRYAIalYAVMRHGIGTSVSR------ASNLNKKDDDvmianpltenvdleddpleteL-NelsdaeanmtrQSRNTFAELAGFEAEIELEDYD--GTFDDYAEIVLQMGLVCMFTLGWYLLPFFCMLETLLQIRTDAYKLCVQTRRPDPNLAESVDTWSALMGTMGLLACFSSAGIIVWT-----GRAFENEKLLSKILIFLILQHLMLAITAFIQMGMEGEePTELKEIRKRQAY 652
                 799***********************************9.565555551111246779******************************9.***********888999***************************************************553....566655.5569************************************************************642.33333358****************9982222222222222222......22222223223444555554444444444430.0444445555556667777888899999999999..*************************************************************************************.....7999999************************9998666*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.37u 0.39s 00:00:01.76 Elapsed: 00:00:01.04
# Mc/sec: 2244.28
//
Query:       MMETSP0890-20130614|1653_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-12   45.7   0.3    1.4e-11   44.1   0.2    1.9  1  PF13857.1  Ankyrin repeats (many copies)
      1e-11   44.9   0.1    2.8e-11   43.4   0.1    1.7  1  PF12796.2  Ankyrin repeats (3 copies)
    8.5e-08   31.5   0.1    2.4e-06   26.9   0.0    2.9  2  PF00023.25 Ankyrin repeat
    5.7e-07   29.7   0.1    1.8e-05   24.9   0.0    2.7  2  PF13637.1  Ankyrin repeats (many copies)
    2.6e-05   23.9   0.0    0.00019   21.2   0.0    2.6  3  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.2   5.1e-15   1.4e-11       1      56 []     463     517 ..     463     517 .. 0.99

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 5.1e-15
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 Ll+hg a++n+++++++t+L+ Aa++g+ +v++ Ll+ gad+ ++ds+g+ta+ lA
  MMETSP0890-20130614|1653_1 463 LLDHG-ASANYSRLSKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLA 517
                 9****.***********************************************998 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1     1e-14   2.8e-11      13      78 ..     460     529 ..     450     543 .. 0.91

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1e-14
   PF12796.2  13 vklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                 +  Ll++ga+ ++    +et+L++Aa  g+ +++k Lle gad++a+d +gnt+  lA  +gh  l++++
  MMETSP0890-20130614|1653_1 460 LLSLLDHGASANYsrlsKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLARVQGHNQLAEYI 529
                 5679************************************************************999986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.14   3.8e+02      21      29 ..     463     471 ..     458     473 .. 0.88
   2 !   26.9   0.0     9e-10   2.4e-06       3      32 ..     478     507 ..     476     508 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.14
                 HHHTTSSTT CS
  PF00023.25  21 LlsqGAdln 29 
                 Ll++GA+ n
  MMETSP0890-20130614|1653_1 463 LLDHGASAN 471
                 99****988 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 9e-10
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +T+L+ Aa++g+ +v+k Ll+ GAd+ a+d
  MMETSP0890-20130614|1653_1 478 ETALMAAAYCGRDDVAKRLLELGADPEATD 507
                 6***************************98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00055       1.5       4      45 ..     447     488 ..     444     489 .. 0.83
   2 !   24.9   0.0   6.6e-09   1.8e-05       3      41 ..     479     517 ..     478     529 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00055
   PF13637.1   4 aLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrg 45 
                 a+  a++s   e + +Ll++g++ n+   s +taL  Aa+ g
  MMETSP0890-20130614|1653_1 447 AIWDAFRSAEFEPLLSLLDHGASANYSRLSKETALMAAAYCG 488
                 5666666777777789***********999*********988 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 6.6e-09
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiA 41 
                 taL+ aa+ gr +++k Lle g+d+ +td++Gnta+ +A
  MMETSP0890-20130614|1653_1 479 TALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLA 517
                 89*********************************9988 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.7   1.3e+04      11      22 ..     408     419 ..     408     422 .. 0.84
   2 ?   -3.9   0.0         5   1.4e+04      21      28 ..     463     470 ..     462     471 .. 0.79
   3 !   21.2   0.0   7.1e-08   0.00019       3      29 ..     478     504 ..     476     505 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.7
   PF13606.1  11 sngrielveaLl 22 
                 ++gr++ v+aLl
  MMETSP0890-20130614|1653_1 408 RSGRPSDVDALL 419
                 689999999998 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 5
   PF13606.1  21 Llengadi 28 
                 Ll++ga  
  MMETSP0890-20130614|1653_1 463 LLDHGASA 470
                 89999975 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 7.1e-08
   PF13606.1   3 nTpLhlAasngrielveaLlengadin 29 
                 +T+L+ Aa++gr ++++ Lle gad+ 
  MMETSP0890-20130614|1653_1 478 ETALMAAAYCGRDDVAKRLLELGADPE 504
                 7************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:00.84
# Mc/sec: 1797.27
//
Query:       MMETSP0890-20130614|1654_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 684.12
//
Query:       MMETSP0890-20130614|1656_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.049   13.3   0.3       0.12   12.1   0.2    1.6  1  PF02234.14 Cyclin-dependent kinase inhibitor
      0.055   11.2   0.2      0.064   11.0   0.1    1.1  1  PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)


Domain annotation for each model (and alignments):
>> PF02234.14  Cyclin-dependent kinase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.7e-05      0.12       9      34 ..     109     133 ..     103     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.7e-05
  PF02234.14   9 heeleeffaaalkeqqeefseKWNFD 34 
                  ee++++f+aa++ + ++ ++KWN+D
  MMETSP0890-20130614|1656_1 109 IEEVDREFKAACE-SAKRTRSKWNYD 133
                 5899*******97.689999*****9 PP

>> PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.4e-06     0.064     324     434 ..      72     178 ..      32     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.4e-06
   PF05879.7 324 rqeLeekvdsklkalfqavlealrkellekfkeavekalkagedFaesvkekkkklvekfdeeaeslvveqakwdasdkiilklekdieaviaklrkeelkelvervekkl 434
                 r   e+ +d +l+ lf +++ alr++ll +f++  ++  + +++F+ + ++ +k++ +k + + + ++++ + ++   k ++  +  ++a+ a ++++ ++ l + ++ ++
  MMETSP0890-20130614|1656_1  72 RYLFEDAIDARLECLFVKHISALRSKLLASFRAGEANIEEVDREFKAACES-AKRTRSKWNYDSDRASLKSVLLEL--KSRNDRVTSVNAKAAAQQQSYMQ-LFQTYQAQI 178
                 5567899**************************999999999***988765.567788889999899999999888..45555555666666655555543.344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1020  (0.074605); expected 273.4 (0.02)
Passed bias filter:                      635  (0.0464453); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.92
# Mc/sec: 653.79
//
Query:       MMETSP0890-20130614|1659_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   62.9   1.4    2.7e-12   45.9   0.1    2.4  2  PF04232.7 Stage V sporulation protein S (SpoVS)


Domain annotation for each model (and alignments):
>> PF04232.7  Stage V sporulation protein S (SpoVS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.4e-07     0.006      36      69 ..     114     148 ..      83     164 .. 0.83
   2 !   45.9   0.1     2e-16   2.7e-12       2      83 ..     180     268 ..     179     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.4e-07
   PF04232.7  36 agavNqAvKAiAia.RgflapdgidlvvvPaFadv 69 
                  + vN  +K iAia ++ +++ gi ++++P F++ 
  MMETSP0890-20130614|1659_1 114 EANVNTSIKGIAIAaKRCVEELGIHIACAPHFREN 148
                 5689*********64789**************984 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 2e-16
   PF04232.7   2 evlkvsaksnpksvAgaiaavlrekekaeiqaiGagavNqAvKAiAiaRgflapd.....gidlvvvPaFadveidge..ertaikliv 83 
                 +vl v+ ++  + +Agaia+  r++++  ++aiGa+av   v+A+A +R +l++d     + d+++ P F++v+++g   e t ++l v
  MMETSP0890-20130614|1659_1 180 DVLTVARSTDYRILAGAIAKRTRDNQQSVLRAIGASAVFASVRALATCREYLEQDatpetTNDVIALPRFSKVRVEGRdsETTVLELCV 268
                 79999999999*****************************************9873332256*************98611455566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 1208.30
//
Query:       MMETSP0890-20130614|1658_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.02
# Mc/sec: 944.45
//
Query:       MMETSP0890-20130614|1647_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.1   0.0     0.0057   16.2   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
    4.3e-06   26.1   0.9     0.0009   18.7   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   6.5e-06     0.045      21      50 ..       6      35 ..       2      38 .. 0.92
   2 !   16.2   0.0   8.4e-07    0.0057      18      50 ..      40      72 ..      37      75 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.5e-06
  PF06743.10 21 ffeklasalereLdsispelllnlvwSlcl 50
                +f+++a a  ++Ld+++p++  n+ w+++ 
  MMETSP0890-20130614|1647_1  6 LFNAIADAALTKLDKFNPQDIANTTWAFAT 35
                8999************************86 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 8.4e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Ld++ p++l n+ w+++ 
  MMETSP0890-20130614|1647_1 40 APALFNAIADAALTKLDGFTPQNLANTAWAFAT 72
                5789***************************96 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.3e-07    0.0009      17      36 ..       6      29 ..       3      29 .. 0.88
   2 !    6.2   0.1     0.001       6.9      17      36 ..      43      66 ..      40      66 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.3e-07
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         FNpQ+IANt
  MMETSP0890-20130614|1647_1  6 LFNAIAdaalTKLDKFNPQDIANT 29
                888888888888999********9 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.001
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         F pQ+ ANt
  MMETSP0890-20130614|1647_1 43 LFNAIAdaalTKLDGFTPQNLANT 66
                888888888888999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.61
# Mc/sec: 314.28
//
Query:       MMETSP0890-20130614|1660_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-70  235.9   0.0    6.6e-70  235.6   0.0    1.0  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.6   0.0   4.8e-74   6.6e-70       3     314 ..      80     397 ..      78     399 .] 0.89

  Alignments for each domain:
  == domain 1    score: 235.6 bits;  conditional E-value: 4.8e-74
                 HHHHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG......GT-BSEE.EEE--..--EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHT.S-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.---- CS
  PF00632.20   3 lskellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelesstea...vedlaltFtieedkke..deielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilke.fspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFe 314
                 ++k l+ ++l lf ++++ g+    +p+s      + ++++l+lf f+G++++ka+ +++ l++++  ++lk++l  +++t+ dle+id e ++s ++++++++s++    +e+l+ltF++++   +  +++++ +l+pnG+ni Vt++nk++Y++l+ +y++ + v++ql +f++Gf e+i+++ l++f+ +el+lli G  + +d++d++r+t+y g +      +p+++++w+++++ f++ +r+++ +F+TGss+lP+ Gf++l+       +ft     +     P a+TCfn+L+Lp Y+s++ l+  L + i+    gF 
  MMETSP0890-20130614|1660_1  80 IAKTLF-EDLSLFVSKKEAGYAANINPFS-----GDIHSNHLRLFNFAGRFVAKALRDRVSLPITICLPLLKHIL-SVPLTFADLEFIDAESFQSYAWIRDYQESDDTnstLEALGLTFCVDSIH-PrnGSVHTADLVPNGRNIAVTEANKSQYLSLVLKYRVLDAVREQLISFLRGFDEIIDRSILSVFDYQELQLLIGGVAD-MDINDWKRHTRYLGAFAqlqDRHPVVQMFWHCIENdFDETDRARLCQFTTGSSQLPPMGFKALTgddgryCPFTLASLPRALGLWPRAHTCFNRLDLPLYKSYDELHSYLSLTIRLEVVGFT 397
                 677778.5789997666666553333333.....4456679**********************************.9***********************998887778889999*****74332.34589999**********************************************************************.9************9888777899****************************************9999988888888877777789***************************9987767776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.96
# Mc/sec: 995.99
//
Query:       MMETSP0890-20130614|1657_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-61  205.9   0.0    7.2e-61  205.4   0.0    1.2  1  PF00069.20 Protein kinase domain
      8e-43  146.3   0.0    1.1e-42  145.8   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    2.6e-06   26.7   0.0      5e-06   25.8   0.0    1.4  1  PF09757.4  Arb2 domain
    6.7e-05   22.6   0.1    0.00015   21.4   0.0    1.5  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.024   13.5   0.1       0.04   12.8   0.1    1.2  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.4   0.0   2.6e-64   7.2e-61       3     260 .]     391     653 ..     389     653 .. 0.92

  Alignments for each domain:
  == domain 1    score: 205.4 bits;  conditional E-value: 2.6e-64
                 EEEEEE----EEEEEEEETTCCE...EEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH....HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE...CEESS-CSS----GGGS-HHHHH..TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgk...kvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk....kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl...eksseklttlvgtreYmAPEvll..kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 l++ +G+ +fGkV+ ++kk+ ++    +A+K+lkk++ +  +e++ + E +il +++Hp++v+l  +f+++ +lylv+ y++gg+l+++++    ++g +++e + ++a +i+ +l++lH+ g++HrD+K eN+L+d++g++ i+DFGl+k++   + ++ +l+t++gt+eY+APEvl   ++  y  k+D+Ws+Gv++ye+l   +pf++    + ++l+++i + + +++ +     s+ ++ l+k ll+kdp+ R+  ++i++ +++
  MMETSP0890-20130614|1657_1 391 LENVIGKTAFGKVMLVRKKHGSDggqAYAMKVLKKKDVEAHAEQA-MAERAILVRIRHPFVVRLSYAFQTRAHLYLVTPYYPGGNLKTHMEkstdSKGYFNQERASFYAAEICLALQHLHQVGVVHRDVKLENVLVDRQGHVAITDFGLSKEVaiqNITKMTLKTICGTPEYLAPEVLTasRNHTYNCKADWWSFGVLIYEMLHSVTPFYRP---NTRALYRSIVRDPPRFPPEIF---SNAATILLKHLLAKDPHCRPDGQQIKSYEFF 653
                 67899********7777665544444************9999765.77******************************************9999999999****************************************************99988888999**************8844566777899**********************...9***************97766...489**********************998876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.0   4.1e-46   1.1e-42       3     256 ..     391     648 ..     389     650 .. 0.91

  Alignments for each domain:
  == domain 1    score: 145.8 bits;  conditional E-value: 4.1e-46
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-E.ECGGGS-HHHHHHSE...EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeak.lpvkWmapEslkekk...ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                 l++ +G+ afGkV+  + k + ++  +  a+K+lk+++ e + e+ + e +i+ +++hp +v+l  ++ ++ +l++vt y +gG+L++ ++k+  +k  ++ ++   +a++i+ ++++L++  +vHrd+   NvL++++ +v i+DfGL++++  ++ +k++ ++     +++apE+l++++   ++ k+D WsfGvl++E++  + +p+ + +++ +++ + ++     pe  ++    l+k+ ++++p+ Rp+ +++ 
  MMETSP0890-20130614|1657_1 391 LENVIGKTAFGKVMLVRKK-HGSDGGQAYAMKVLKKKDVEAHAEQAMAERAILVRIRHPFVVRLSYAFQTRAHLYLVTPYYPGGNLKTHMEKStdSKGYFNQERASFYAAEICLALQHLHQVGVVHRDVKLENVLVDRQGHVAITDFGLSKEVAIQNITKMTLKTIcGTPEYLAPEVLTASRnhtYNCKADWWSFGVLIYEMLH-SVTPFYRPNTRALYRSIVRDPPRFPPEIFSNAATILLKHLLAKDPHCRPDGQQIK 648
                 6789***********9999.89999999***************************************************************99545556788888899*********************************************666555555555535679*******9888888******************9.559*****9********99888889999999999***************988886 PP

>> PF09757.4  Arb2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.8e-09     5e-06      46     179 ..      33     158 ..      17     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.8e-09
   PF09757.4  46 kldrlhdvirsyqserLsnkykglk.lsLpivrtalpksfedqIlaspnillsaekllvvihdppe....iwanrdpitggleagssvvvdvkkyikwakeegygvidvNipqlllevekkekatynpssaaqelalyv 179
                 ++  +  +i +y+++r+ ++  gl+   +p   ++ ++    +I+ + n    + +++++i ++      +w+++ + + gl+ g+++       i+++ ++g+gvi++N++ +     +k +++   ss+ +e++ly 
  MMETSP0890-20130614|1657_1  33 EYVSMNLAIEKYIESRMLAL--GLEkRFVP---EESEDMCCCPIYLNLN---GNGPVVLLIQNKIGakpgVWSRSLCVQAGLNEGAMLC-----TIEKCLGAGFGVIVLNPNTNSIILDNKRRQRIFGSSTPEEHVLYC 158
                 55667779999*********..99999999...7777777788888866...556788888775435777*******************.....*****************9988876788889999999999999885 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.6e-08   0.00015     145     194 ..     491     538 ..     469     540 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.6e-08
                 HHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT CS
  PF01636.18 145 leeleervlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfed 194
                 +e++   +++ ++al++   + +++H+D ++ N+lvd ++g+v++ Df++
  MMETSP0890-20130614|1657_1 491 QERASFYAAEICLALQHL-HQVGVVHRDVKLENVLVD-RQGHVAITDFGL 538
                 677777789999999995.99****************.**********97 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.5e-05      0.04     117     166 ..     491     537 ..     473     548 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
   PF06293.9 117 eelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                 +e+      ++  + + +h++gv H+d    n+l+d ++   +v++ D+ 
  MMETSP0890-20130614|1657_1 491 QERASFYAAEICLALQHLHQVGVVHRDVKLENVLVDRQG---HVAITDFG 537
                 5555556677889999**********************9...99999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.18u 0.42s 00:00:01.60 Elapsed: 00:00:01.61
# Mc/sec: 1207.11
//
Query:       MMETSP0890-20130614|1661_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-53  179.7   0.1    7.8e-53  179.5   0.1    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   0.1   5.7e-57   7.8e-53       1     306 [.      24     329 ..      24     330 .. 0.86

  Alignments for each domain:
  == domain 1    score: 179.5 bits;  conditional E-value: 5.7e-57
                 HHHG-----EEE...----------EEEEEGGGSTTSBCCHCHHHHHHHCHHHC....---EEEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..HHHHHHHHHHS.--TT.-CHHHHHHHHT-HHCCCHHHH..----..-B--------HHHHHHCCCCCTH.TT---EEEEEGGG-TT-.......................S..----T.TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE- CS
  PF00291.20   1 islgvgpTPlvrlpsallsklgganvflKlEslnptgSfKdRgaanallralak....ggkgvveassGNhGaavAlaaallglkativvpsgappekialiralGaevilvvssvegdyddaaelaekalelvrplkgei.ldqs.ndpdviaGygtiglEileqlg..kpdpdavvvpvGgGgliaGiakglkelil.pkirvigvepegsdalarslragervq.ldkk.......ttiaglscgtpldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvlt 306
                 +++ vg+TP+v+l++    +  g +v++K+E +np  S+KdR a+ ++++a++k     g +vvea+sGN+G+avA+++a++g+ ++i + +  + e+++l+r lGa+vi+++ +  g  + +++ ae   el+++ +g+  + q+ n++++  + +t+g+Ei+ +++  ++++   v + G+Gg++ G +k++k+    p++++i +epe +  la ++ +++ ++ ++k+       + i+g  +++ ++ +l  + +d l de   ++ e  +e+++ la+++gi+++ sg+    a+l  +k      ++g+r++++l+
  MMETSP0890-20130614|1661_1  24 VTQLVGNTPVVKLNE--KMAPPGVEVYAKCEFFNPLSSVKDRLAVAIIEDAEKKgllkSGDTVVEATSGNTGIAVAMVCAQRGYNCVITIAEPFSVERRRLMRMLGAKVIVTPKA--GKGTGMVRKAE---ELCAA-NGWFlAHQFeNEANWKFHEATTGPEIVNDFKnlQLTH--WVTGYGTGGTFHGAGKAIKA--AlPHVKIILAEPEAAGLLASGIPTERNDDgSPKTshpafnaHPIQGWTPDF-IPKVLEDAPMDNLLDELFPIPGEKSIETAKALASTQGILTGISGGGTTYAALEIAKNA----PEGSRILAMLP 329
                 5899********863..33456889*************************999999997788************************************************99996..55666666665...67876.677755566*********************9887777..9*******************..449***********************9987444355566667899999998.555555555666666556**************************99999998754443....79999*99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:00.93
# Mc/sec: 966.27
//
Query:       MMETSP0890-20130614|1663_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                       81  (0.00592452); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.49s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 292.50
//
Query:       MMETSP0890-20130614|1664_1  [L=979]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   40.9   0.3      6e-10   38.9   0.4    1.8  2  PF00753.22 Metallo-beta-lactamase superfamily
     0.0012   18.3   0.1     0.0028   17.1   0.1    1.6  1  PF12706.2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.4   8.8e-14     6e-10      45     170 ..     222     354 ..     212     372 .. 0.82
   2 ?   -3.3   0.0      0.75   5.1e+03      63     126 ..     777     857 ..     776     861 .. 0.70

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 8.8e-14
                 EEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHH..CSEEEEEEEEECEEEEEEEEEEEEEEEETTCCSSTEEEEEE.........TTTTEEEETTTSSSTTSSSSSBGHHHHCCCCSEET CS
  PF00753.22  45 davilTHaHaDHiGGlpglleafpapvvygaeearallrlalrdelkrkk..pvrvllvdvdeevgdgilggrrllfvtghpghgpghgvvyl.........gggkilftGDllfvagtgrlgldltlrgakvrdps 170
                 + +++TH H+DH  G++++l+a  + ++++++ + + +   + ++   +   + r++ + v+ ++ + ++ +r+++ + ++++ g++ ++++l           +k+lftGD+lf++g+g  ++    ++ k++ + 
  MMETSP0890-20130614|1664_1 222 TSILITHKHWDHQAGVGAVLKAEEDRTRAASAKYGESRFPQQIRVVASASeyGIRHRTHSVVPGHIERVGRLRIEVIPSPCHTIGHVMFALDLnsqtqnkeiTYRKALFTGDTLFCGGCGAPFE----GSQKDMAHN 354
                 679******************************999988777666666667777777777777777777777777777777777777777777*****************************99....666666654 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.75
                 HHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHH.................CSEEEEEEEEECEEEEEEEEEEEEEEEETTCC CS
  PF00753.22  63 lleafpapvvygaeearallrlalrdelkrkk.................pvrvllvdvdeevgdgilggrrllfvtghpgh 126
                 l++++++++ y+++ a    +++++d++   k                 + + + + v+++++  ++   +l+++++ +g+
  MMETSP0890-20130614|1664_1 777 LAAERDPATSYTQLLASDSNDDHVEDWRLDLKdarlifealcalsasadANVQDAWLVFDNEESITITRSELYRALTLMGP 857
                 677888888888888888888888888888877777777777777777666666666666666666666666666666655 PP

>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     4e-07    0.0028      19     145 ..     210     358 ..     176     409 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4e-07
                 -SS-HHHHHTT--EEE-S---GGG.S-....HHHHHHS-T...EEESSHHHHHHHH......H---..................--EEE-SSEEE-----.---HHHHSHH--EEE............S--EEE-----S.......-..........HHHH CS
   PF12706.2  19 qppaalldlpridavlisHaHaDHilgldslletikrlnk...pvygplgvaeflrek....kagikalepefdkkraieidkekkieegdwwitavpaq.Hgsgryglnkgfvle..........tegkkvyysgDtgy.......d..........fkei 145
                  p ++++++  +  +li+H H+DH  g   +l++ + +++     yg  ++ +++r      ++gi        ++r ++  +++  ++g ++i+++p++ H+ g ++    f+l+          t  +k ++ gDt +       +          f++i
  MMETSP0890-20130614|1664_1 210 LPSERDHPKIILTSILITHKHWDHQAGVGAVLKAEEDRTRaasAKYGESRFPQQIRVVasasEYGI--------RHRTHSVVPGHIERVGRLRIEVIPSPcHTIGHVM----FALDlnsqtqnkeiT-YRKALFTGDTLFcggcgapFegsqkdmahnFRRI 358
                 33333333348999*************999999999888899977777777777773333335555........4456666666777777788888877634434445....888888998888753.7889999999876554433134444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:01.36
# Mc/sec: 1725.02
//
Query:       MMETSP0890-20130614|1665_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3003  (0.219646); expected 273.4 (0.02)
Passed bias filter:                      576  (0.0421299); expected 273.4 (0.02)
Passed Vit filter:                       420  (0.0307197); expected 13.7 (0.001)
Passed Fwd filter:                       131  (0.00958163); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 5.42u 0.48s 00:00:05.90 Elapsed: 00:00:03.34
# Mc/sec: 236.05
//
Query:       MMETSP0890-20130614|1668_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.1e-110  366.9   0.0   7.8e-110  366.5   0.0    1.1  1  PF00316.15 Fructose-1-6-bisphosphatase
  ------ inclusion threshold ------
      0.032   14.2   0.6       0.15   12.1   0.4    2.1  2  PF11488.3  Transcriptional regulatory protein LGE1


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.5   0.0  1.1e-113  7.8e-110       1     322 [.      18     357 ..      18     360 .. 0.95

  Alignments for each domain:
  == domain 1    score: 366.5 bits;  conditional E-value: 1.1e-113
  PF00316.15   1 itltrfileeqkeeaatgelkevlsslaeaaktiaskirkagla.ellglagatnvtGdeqkklDvladdilieaLkaseavkvlaSEEeeelvvlegekegkyavaiDPlDGSSnidtnvsvGTifsifrras................edeasti..dvlrpGreqvAagyviYGpstalvltlgkGvneftlDldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkgGiflypgdkkyekgkLRllyEaaPlaflieqagGkatdgkkriLdlvpkklhqrtpivlGskdeverveeli 322
                 +tl+r +le  ++ +  ++l+++++s+++a+kti+s +++agl+ el gla   nv+G+eqkklDv+++++l++aL+++++  ++aSEEe+++ ++e+   +ky+ ++DPlDGSSnid+ ++ GTif+if++++                +d a++   ++l+pG  +vAagy++Y +st+lvltlgkGv++ftlD+++ ef+l ++++ ip++g+i+s+ne+n  kw ++++ky + lk+++  +   ys+Ryigs+Vadvhr+ll+gGi++yp+d ++++gk+RllyEaaP++f+i qagG a++g ++i+ + p+++hqr+pi++Gsk++++++e+++
  MMETSP0890-20130614|1668_1  18 MTLSRYMLEVTRKDPELQDLERLMASVQMACKTISSLVQRAGLNsELSGLANDINVQGEEQKKLDVISNNVLKDALRYTGRLGLVASEEEANPLLVEEAYDAKYVAVFDPLDGSSNIDAAIATGTIFGIFEQTEecffeshyqdrdsevlDDYAQKCllNALQPGDSLVAAGYCMYSSSTVLVLTLGKGVHGFTLDPHIDEFVLSHPDLCIPDQGQIYSVNEANFDKWSPPIQKYFQALKSGNLRP-TRYSARYIGSMVADVHRTLLYGGIYAYPADMHHPNGKIRLLYEAAPMSFIISQAGGRASTGFADIMAIHPTSVHQRVPIFIGSKQDIADFEAFL 357
                 7999******99999****************************8256789999******************************************************************************98899******9988887633333334689********************************************************************************98888.99****************************************************************************************9976 PP

>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   2.2e-05      0.15      24      70 ..      17      65 ..       7      87 .. 0.85
   2 ?   -1.0   0.0      0.27   1.9e+03      49      66 ..      77      94 ..      74      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.2e-05
   PF11488.3 24 k..lrsrvkelesldkeleelksqklklelelalletqvdrdalnvqlt 70
                k  l +   e++++d el++l++ +   ++  +++++ v+r +ln +l 
  MMETSP0890-20130614|1668_1 17 KmtLSRYMLEVTRKDPELQDLERLMASVQMACKTISSLVQRAGLNSELS 65
                255777788999**********************************996 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.27
   PF11488.3 49 lelelalletqvdrdaln 66
                 ++ l  ++++v +dal+
  MMETSP0890-20130614|1668_1 77 EQKKLDVISNNVLKDALR 94
                5688899999*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 1169.31
//
Query:       MMETSP0890-20130614|1667_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.59
# Mc/sec: 1259.10
//
Query:       MMETSP0890-20130614|1671_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   14.8   0.0      0.011   14.3   0.0    1.2  1  PF11379.3 Protein of unknown function (DUF3182)


Domain annotation for each model (and alignments):
>> PF11379.3  Protein of unknown function (DUF3182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.7e-07     0.011     283     352 ..     138     206 ..     121     209 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.7e-07
   PF11379.3 283 rarsGVLEqSWRvGGAsgAElaAleafrqdpaleavrastrEvygkdkalpadaevvyrgedeeaglltK 352
                  + + VL +S ++G A  A l+  + +  +p + a++a +  +y+ +++lpa a+++y  +d++ +   K
  MMETSP0890-20130614|1671_1 138 FVEITVLAKSNKLGSAKNAKLTKYHDLSVQPIVLAIHALSGSIYD-ETTLPALANILYSTSDHRKNDTNK 206
                 56678****************************************.899***********9988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 1106.32
//
Query:       MMETSP0890-20130614|1670_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-23   81.9   3.3    3.8e-22   79.4   2.3    1.9  1  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   2.3   2.8e-26   3.8e-22       4     222 ..      62     386 ..      59     387 .. 0.87

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 2.8e-26
                 -CCCCTCCSSS---SSSSSSS----S----TTHHHHHHHHHHHHHHHHHH--....------B---S.--SS--HHHH-SEEE-TSST-..........EEE-T..T---EETTTTEE-B-...........--S-GCCS--------.-HHHHHHHHHHH-.........................-SHHHHHHHHHH..........HHHHHHHH--..............................................................................................-----TTGGGGSTHHHHHHHHHHHHHHHHHH CS
  PF00264.15   4 ydqlagiHgaplkewkeaakknkgyciHgsvlFltWHRpYlllfEqalreecgyaapdvrlPYWdwa.eeelpedlansaifdkepegk......gggcvtnplysfkakdltvelgkvee.........daekkkeaetkrclkrnleatsanqelakqed................veellakllsdytgfsntsegagksalslespHnavHvwvGg.............................................................................................GhmgdvavaafDPiFflHHaniDrlwaiWqa 222
                 yd++   H         a+ +   ++ H s+ F+t+HR  +l+fE+ l  ++   +    +PYW+++ + + ++++++s i++++++g       +g +++++   fk  ++ v  gk+ e         d+  +  +++++ + r++ +++ +++++++++                +e +l++  +dy++f n+++     ++   +pH+ +H w+Gg                                                                                             G+  d  +++++P+Ff HHan+Dr + +Wq 
  MMETSP0890-20130614|1670_1  62 YDEILLQHF-------YAGIDVRCDQGHFSAGFFTFHRSLVLTFENSLLAIDPSIG---GVPYWNYElDLQENANPSKSVIWSDDYYGPsegdpeNGWQIKSGT--FK--NWSVAYGKFFEgpprldlqtDTLVHGIPSNPYGYLRGFANSNPAPRVTRSHQqcgqaiepywgikqdaLEGCLNQ--TDYMSFFNCMDY---GTNGADGPHTFIHSWLGGawgshncttkqldtgisdnvngclacstdinycqgrnltecvclinhqacqrmdipnatcqrypggderpdyhpnapckrcpacrqdpqmgaaGDFWDGLSSPNEPLFFSHHANVDRSFMTWQL 386
                 555555555.......34555666789***********************994444...5*******9889999999************766665444445555..55..555555556667888888877777888899999999998888899999998888888888888877777777777..9*********98...89999*******************************************************************************************************9999999999**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.75
# Mc/sec: 1492.13
//
Query:       MMETSP0890-20130614|1672_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.61
# Mc/sec: 216.06
//
Query:       MMETSP0890-20130614|1673_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-09   35.4   1.8    1.6e-08   34.2   1.2    1.7  1  PF12906.2  RING-variant domain
     0.0035   16.8   0.0      0.013   15.0   0.0    1.9  2  PF02622.10 Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   1.2   2.4e-12   1.6e-08      10      47 .]       3      55 ..       1      55 [. 0.79

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2.4e-12
                ---..---------TTS--HHHHHHHHHH...............HT-SB-S-- CS
   PF12906.2 10 eseplirpCkCkGslklvHesCleeWlke...............saktkCelC 47
                e ++li+pC+C+G  k+vH +Cl++W ++                ++++C++C
  MMETSP0890-20130614|1673_1  3 EVGELISPCNCSGGQKYVHTECLKRWQRMlivsspthpafqhddLRDMECNVC 55
                4568***********************99888777666666555555558888 PP

>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.28   1.9e+03      56      69 ..     268     281 ..     217     309 .. 0.68
   2 !   15.0   0.0   1.9e-06     0.013     109     146 ..     423     460 ..     377     468 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.28
  PF02622.10  56 svllGGPveqergf 69 
                   + GGP + ++++
  MMETSP0890-20130614|1673_1 268 IHHKGGPCDSQQIV 281
                 34689999888755 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.9e-06
  PF02622.10 109 eklllflGYagWgagQLesEieegsWlvvpadselifd 146
                  ++  f G a W+  QL  Ei++g W +++ +   i+ 
  MMETSP0890-20130614|1673_1 423 GRVFAFWGDARWSRTQLLGEIARGHWGMCKSTLAEILA 460
                 567789999********************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.43s 00:00:01.30 Elapsed: 00:00:00.84
# Mc/sec: 1523.40
//
Query:       MMETSP0890-20130614|1678_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.47    9.1   4.7        0.5    9.0   3.2    1.1  1  PF02161.10 Progesterone receptor
        3.3    5.3  15.5        3.7    5.1  10.7    1.0  1  PF04147.7  Nop14-like family
        4.6    6.2  10.2        5.3    6.1   7.1    1.2  1  PF06524.7  NOA36 protein
        6.1    5.3   8.4        9.6    4.7   5.8    1.4  1  PF10498.4  Intra-flagellar transport protein 57
        8.5    6.1   9.6        9.7    5.9   6.7    1.1  1  PF06512.8  Sodium ion transport-associated


Domain annotation for each model (and alignments):
>> PF02161.10  Progesterone receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.2   0.00018       0.5      67     135 ..      52     119 ..       9     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00018
  PF02161.10  67 eeepdektqdeqslsdveraesevEasrgkgasssrppekdkdlLdsvldtllapsgpgqsqsspacea 135
                 +ee de+t + q+++d  ++++  ++++++g++    + +d d+++s  dt+ + +  ++++ s a+++
  MMETSP0890-20130614|1678_1  52 AEEGDEETGNYQEEDDNYQEDEGGDEEKKEGEEDMIVSTNDDDDIESSHDTVPDDA-MKRAKESAAVQH 119
                 6778999999******9999999999999999999999**************9999.566888888776 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  10.7    0.0014       3.7     311     389 ..      32     111 ..       4     128 .. 0.40

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0014
   PF04147.7 311 esaddlddefeedddenfglgsaeeeee.eeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                    d+++++  + d++ ++l ++ +ee+ + +ee+ + +++e  d++++e eed+  +++++d+ ++++d   ++  + +
  MMETSP0890-20130614|1678_1  32 SLIDEEGNSIRPGDKDVVKLAEEGDEETgNYQEEDDNYQEDEGGDEEKKEGEEDMIVSTNDDDDIESSHDTVPDDAMKRA 111
                 34455556555555555555533333320222222222222223333333444443333333333333332222222222 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.1    0.0019       5.3     259     305 ..      52      98 ..       4     111 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0019
   PF06524.7 259 dkygdaksvnygyesdddeeesaedydeeededddddeeedetsene 305
                  ++gd +++ny +e d+ +e++ +d++++e e+d +   +d+++ + 
  MMETSP0890-20130614|1678_1  52 AEEGDEETGNYQEEDDNYQEDEGGDEEKKEGEEDMIVSTNDDDDIES 98 
                 56788888888888777777777788777777777766666544333 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.8    0.0035       9.6      84     162 ..       6      90 ..       1     126 [. 0.63

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0035
   PF10498.4  84 g..lkvdfppakLksGsGeqvcyvLddLadaaLkkkkfkfkrpkyekee..deeeeveeddaeiileeveeeqeaeekeqde..l 162
                     ++d+p+a+ +s  G++    + +L+d++ ++++   k +    ee  +e+ +++e+d++   +e  +e+++e +e+    +
  MMETSP0890-20130614|1678_1   6 IssSSEDIPTARTSSVQGDENAVAVASLIDEEGNSIRPGDKDVVKLAEEgdEETGNYQEEDDNYQEDEGGDEEKKEGEEDMIvsT 90 
                 4357899999999*****9999999********9999987777766666666666776666666666666666655544433232 PP

>> PF06512.8  Sodium ion transport-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.7    0.0035       9.7     106     175 ..      37     109 ..       3     134 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0035
   PF06512.8 106 vsvpiaegesDlenleeedtssessegserpfkeeskkgsaeklkkeekkdssssegstvDleppeeee.....e 175
                  +++i +g +D+  l ee+ +++ ++++e+ +  e++ g  ek ++ee  d   s    +D+e + +       +
  MMETSP0890-20130614|1678_1  37 EGNSIRPGDKDVVKLAEEGDEETGNYQEEDDNYQEDEGGDEEKKEGEE--DMIVSTNDDDDIESSHDTVpddamK 109
                 38999999***9999999999999998774444444444555555554..5555555555555554433332220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.44s 00:00:00.96 Elapsed: 00:00:00.78
# Mc/sec: 476.20
//
Query:       MMETSP0890-20130614|1680_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-40  135.6   0.0    8.7e-40  135.0   0.0    1.3  1  PF01412.13 Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   6.4e-44   8.7e-40       2     113 ..       8     120 ..       7     124 .. 0.93

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 6.4e-44
                 HHHHHHCCSGGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCC.TTTS---TTTCGHHHHHHHHHHHHTCHTC CS
  PF01412.13   2 kllkellkepenkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileak.sekskkiksesdkekreefirakYeekkf 113
                 + l+el+k pen+ CaDCgak p+Was ++gvf+Ci+Csg+hr+lg+h+s+v+S++ld+w++eq+++++++gN +a+e++e++  + ++ ++++++ + +++fir+kYe  kf
  MMETSP0890-20130614|1680_1   8 QKLQELIKLPENQLCADCGAKGPRWASASIGVFVCIRCSGIHRNLGTHLSFVRSVNLDEWKPEQVARMTKWGNLRAKEYFEHSiPPGYQIPNEHASVQHVTRFIRDKYEYCKF 120
                 7899*******************************************************************************75567777888899999********98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.95
# Mc/sec: 966.11
//
Query:       MMETSP0890-20130614|1677_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-20   71.4   2.9    4.9e-20   70.6   1.4    1.9  2  PF01849.13 NAC domain
    5.5e-06   25.9   0.6    1.5e-05   24.5   0.4    1.8  1  PF00627.26 UBA/TS-N domain
      0.009   16.5   4.0      0.009   16.5   2.8    2.0  2  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
  ------ inclusion threshold ------
       0.39    8.5   4.1       0.47    8.3   2.8    1.3  1  PF02724.9  CDC45-like protein
        2.9    5.5  10.8       0.72    7.5   5.4    1.4  2  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF01849.13  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   1.4   1.8e-23   4.9e-20       1      58 []      66     123 ..      66     123 .. 0.98
   2 ?   -2.4   0.0       1.1   3.1e+03      26      40 ..     196     209 ..     187     215 .. 0.67

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 1.8e-23
                 XXXXXXXXXXXX-EEE----EEEEE-----EEEEEEEEEEEETTTTEEEEE-EEEEE- CS
  PF01849.13   1 ekKlqkalkklglkeiegveeVtirkkdgkvlvfnnPeVqkspgsntyvvfGeakekd 58 
                 ekK +ka++klg+k++ ++ +Vt++k++++++ + +P+V+ks  s+tyv+fGeak +d
  MMETSP0890-20130614|1677_1  66 EKKNRKAMQKLGMKTVTNIMRVTVKKSKNILFAIQQPDVFKSSSSDTYVIFGEAKIED 123
                 8******************************************************886 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.1
                 -----EEEEEEEEEE CS
  PF01849.13  26 kkdgkvlvfnnPeVq 40 
                  kd ++lv+++++ +
  MMETSP0890-20130614|1677_1 196 AKD-IELVMAQANCT 209
                 556.88888887665 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.4   5.3e-09   1.5e-05       2      37 .]     195     231 ..     194     231 .. 0.96

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.3e-09
                 THHHHHHHHH-.---HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26   2 deeaiqqLreM.GfsreeakkALratnnnvErAveyL 37 
                  +++i+ ++++ + +r  a+ AL++++n++  A++yL
  MMETSP0890-20130614|1677_1 195 EAKDIELVMAQaNCTRAKAVSALKSNDNDIVNAIMYL 231
                 6899********************************9 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.8   3.3e-06     0.009       7      64 ..      14      86 ..      11     112 .. 0.75
   2 ?   -1.3   0.2       1.1     3e+03      20      27 ..     184     191 ..     176     223 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.3e-06
   PF11942.3  7 evddeeeEeeeeedeeeelseeaefieea.................eddrrhreldrrrekeeeedaeelaevlk 64
                e d++e++++ ++d+ +el+e++  +e+                  +++++ r ++++r+  ++ + + + ++++
  MMETSP0890-20130614|1677_1 14 ELDEDEDDDD-DDDDVPELDEVD-QVEDVppagaddaaagaggedgTKGKQNRSEKKNRKAMQKLGMKTVTNIMR 86
                5666666666.566788887775.555555999999*****9999988888888888888888888877777775 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.1
   PF11942.3  20 deeeelse 27 
                 de+ e +e
  MMETSP0890-20130614|1677_1 184 DEATEVDE 191
                 11111111 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8   0.00017      0.47     125     192 ..       5      75 ..       1     134 [. 0.52

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00017
   PF02724.9 125 vemkeeeeeesdedsdseddeeeeessa..sekrksesdedeedddde..ededeeqrkrsnesslakslrr 192
                 +em + +e e ded+d++dd+++ ++ +  ++ ++   + +++++     ed+ + +++rs++ ++ k++++
  MMETSP0890-20130614|1677_1   5 EEMAKGNEPELDEDEDDDDDDDDVPELDevDQVEDVPPAGADDAAAGAggEDGTKGKQNRSEK-KNRKAMQK 75 
                 444444442223333333222222222200222222222222222222003333333333333.22222222 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.4   0.00026      0.72     339     425 ..      11     102 ..       2     110 .. 0.52
   2 ?   -2.6   0.0       0.3   8.1e+02     343     365 ..     173     195 ..     119     207 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00026
   PF04147.7 339 eeeeegvededeeeddddeeeeeedvdedee.......eedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkeelpftfpcP 425
                 +e   +++++++++dddd++ e ++vd+ e+       + +   + +d  + +++ +e+++++a +k + k++ + ++ + ++++++ f ++ P
  MMETSP0890-20130614|1677_1  11 NEP--ELDEDEDDDDDDDDVPELDEVDQVEDvppagadDAAAGAGGEDGTKGKQNRSEKKNRKAMQKLGMKTVTNIMRVTVKKSKNILFAIQQP 102
                 333..44444555555555556667776666555542122222223333333333333555566666666666666777777777777777777 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.3
   PF04147.7 343 egvededeeeddddeeeeeedvd 365
                  gv+++d + dd+  e +e  v+
  MMETSP0890-20130614|1677_1 173 AGVQNQDGAADDEATEVDETGVE 195
                 45555555555555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       771  (0.0563926); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:00.62
# Mc/sec: 900.57
//
Query:       MMETSP0890-20130614|1682_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.5   0.0       0.06   11.1   0.0    1.0  1  PF03337.8 Poxvirus F12L protein


Domain annotation for each model (and alignments):
>> PF03337.8  Poxvirus F12L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.4e-06      0.06     338     396 ..      66     124 ..      63     131 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.4e-06
   PF03337.8 338 WasaevelpkdlitkaeakrkikalekaaseaaqlLyeavlaqsaaLarllspcdmlsf 396
                 W+s++v   +d+ + + + ++  ale+a +++   L e v++++a+++rl+ ++d+++ 
  MMETSP0890-20130614|1682_1  66 WNSKAVAQYEDIQSLNSVMSEVFALEEANAQINDPLNETVINNKATIKRLMTSPDTVAL 124
                 ****************************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.64
# Mc/sec: 584.11
//
Query:       MMETSP0890-20130614|1681_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-92  309.4   0.0    1.2e-91  307.1   0.0    2.1  2  PF03378.10 CAS/CSE protein, C-terminus
    7.9e-82  274.6   0.0    1.4e-81  273.8   0.0    1.4  1  PF08506.5  Cse1
  ------ inclusion threshold ------
       0.12   11.9   0.0        0.3   10.7   0.0    1.6  1  PF14069.1  Stage VI sporulation protein F


Domain annotation for each model (and alignments):
>> PF03378.10  CAS/CSE protein, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.18   8.2e+02     234     301 ..      59     125 ..      46     136 .. 0.59
   2 !  307.1   0.0   2.5e-95   1.2e-91      13     415 ..     302     740 ..     297     755 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.18
  PF03378.10 234 ealeqylkqilsllfqrl.qnsktekfkkrfvvflslv.svkkgadalielideiQakvftmllekiiip 301
                 e++++yl++  + + qrl ++s+ ek+ +  v  + ++ sv ++    ++  de     ++ ++e+i+ p
  MMETSP0890-20130614|1681_1  59 EEFQPYLQRFAAAVWQRLmHTSRHEKYDHLAVTSIGFLaSVIANGVHTAQFSDE---ATLKNIIESIVAP 125
                 567888888888888887346778888766555444430333344444444443...3344555555555 PP

  == domain 2    score: 307.1 bits;  conditional E-value: 2.5e-95
  PF03378.10  13 tlitkadiaPlakdllenlFkllekdes......qENeylmkcimRvlivlkeavlpvadtvlqkLteilevvskNPsnPrFnyYlFEalgaliriaak.........adp......aavskleeaLfpvfqeiLqeDvteflPyvfqllaallelnesetlpesylalfellLspalWerkgnvpalvrllsaiikkaseeivaekklegvLgiFqkLiaskandeqgFdllesvieslpaealeqylkqilsllfqrlqnskt.ekfkkrfvvflslvsvkkgadalielideiQ.akvftmllekiiipeiqkl...arpldrKlavvsltklltesealldr.ykklwaklleallkllelpeeeaa.............adedeiideedvedigyqvafsqLnt.akkkeeDplpe.ikdvkqfvaqslkklskahpGr 415
                 + + ++d++P++++l++ lF++++ ++s       ENey  k++mR l v   av+p+a+ + +kL++ l+ v+ NP+nP+Fn+YlFE+l++lir++++         + +      aa sk+e  Lfp+fq++Lq  v ef+Pyvfq+la ll+ ++  +l+ +y +l+++lL+p+lWe++gnvpal++ll+a+++ +++ i+ e++le+ Lg+FqkL+ask  + ++F ll +++ slp++++++yl +i+ ll++rlq+++    +++ f++f+ l++ k g+++l +++++   ++v   +l+++iip +  +   +++ d K a+v+l +ll+e ++ +    + +w++  +all+ll+   + ++             a +d+++   +v+ + y +afsqL++ a   + D ++  ++d+ ++v + +++l++ +p +
  MMETSP0890-20130614|1681_1 302 HQFKRQDLEPYLTQLFQALFAVIDAPDStsiekqWENEYCVKAVMRLLLVADTAVAPAAQLITDKLVKALARVCGNPRNPKFNHYLFESLAVLIRVVCRgssceqnngN-QpsvqadAAASKFEVLLFPPFQSVLQMAVAEFTPYVFQILALLLDFKR--ELSPAYASLLPPLLHPTLWEHRGNVPALAQLLEAYLRIGTRLILDEGHLEPYLGVFQKLLASKLSEPHAFHLLTALFLSLPPQQIDPYLPTIFRLLLTRLQHNRDrVGLVHYFTAFIGLLAGKRGPSFLLQSLEAAGgQGVGANVLQHVIIPALISVpifSEERDAKHAAVGLVRLLSEEPNACFSgPSPFWTNAAAALLGLLQANAKITQgglilvspladitAGDDHFVG--NVPGADYDAAFSQLAFgATTARPDAFATdVPDLGAYVQTAFTNLAASRP-E 740
                 67899***********************99*9988*************************************************************9963222222221.1222222578************************************99..9****************************************************************************************************99862579*************************9863789999********987642228999*************9988777776999***********9987665544333332221111155666654..466679*********93455667999877***********999998877.4 PP

>> PF08506.5  Cse1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.8   0.0     3e-85   1.4e-81      98     370 .]      28     295 ..       1     295 [. 0.91

  Alignments for each domain:
  == domain 1    score: 273.8 bits;  conditional E-value: 3e-85
                 G-TT-SSS--HHHHHHHHHHHHHHHHHHC-TTT---THHHHHHHHHHHHTT--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SCCHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHH-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-TTT-HHHHHHHHHHHHHHHB-----------B-TTS-HHHHHHHCTTHHHC...-TT-S-HHHHHHHHHHHHHHCCCS-HHHHHCCHHHHHHHTTSS-HHHHHHHHHHH CS
   PF08506.5  98 letdddeeagvleklkasicelvqlYvekyeeefepyleefveavWnlLvsvskqtkydiLvskalkFltsvaevkkyaelFeneevlkqiiekvvlpNltlResDeElFEdepieyirrDlEGsdvdtrrraatdllreLkekfeakvtevvseyvkkllekyaenpsenWkkkdlaiyLvtslaakgevtksGvtstnelvdvvdFfakeiapdLe...advnsepilkadaikyivtFrsqlskeqllevlpllirfLqsesvvvytYaaiai 370
                 l ++dd+++g +e+l+a+i+e+++lY++ky+eef+pyl++f  avW+ L+++s ++kyd L+++++ Fl+sv+    ++  F++e +lk+iie++v pNl+lR+sD E FEd+p e+i rDlE +d++trrr+a +l++ ++++ e+k t++  ++  +ll+      s+nW++kd+  +Lvt+l++++e++++G+t t++ +d+ + f+++i p+L    +++  +pil adai++++tFr+ql+   l+e +p+l+++ qs++vvv+tYaa+a+
  MMETSP0890-20130614|1681_1  28 LLSHDDDTEGPIEALQAAIVENIALYASKYDEEFQPYLQRFAAAVWQRLMHTSRHEKYDHLAVTSIGFLASVIANGVHTAQFSDEATLKNIIESIVAPNLQLRDSDLEQFEDNPKEFINRDLEAADAETRRRSARELVQAMCKHHETKTTQLCIAHASQLLA------STNWRDKDAFFQLVTALTIRAESQRAGATRTSNTIDLPQIFSQHIRPELLkssQENGGHPILLADAIQFVCTFRNQLP--GLTEFIPVLATHCQSRHVVVHTYAAYAL 295
                 3359999**********************************************************************************************************************************************************9......8***********************************************98643345579******************8..599**********************985 PP

>> PF14069.1  Stage VI sporulation protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.7e-05       0.3      18      40 ..     100     122 ..      97     125 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.7e-05
   PF14069.1  18 LAnsvknanlkdektvrqlIkqv 40 
                 +An+v+ a+++de+t++++I+ +
  MMETSP0890-20130614|1681_1 100 IANGVHTAQFSDEATLKNIIESI 122
                 79******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:00.89
# Mc/sec: 2057.10
//
Query:       MMETSP0890-20130614|1683_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-67  225.5   0.0    1.6e-66  224.0   0.0    1.7  2  PF00069.20 Protein kinase domain
    2.1e-36  125.2   0.0    3.3e-36  124.6   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    1.2e-05   25.0   0.0    2.4e-05   24.0   0.0    1.5  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.065   12.1   0.0       0.18   10.7   0.0    1.7  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
        8.7    6.1  12.2       0.33   10.7   1.5    2.3  2  PF06217.7  GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.0   5.9e-70   1.6e-66       4     253 ..      89     333 ..      86     338 .. 0.95
   2 ?   -2.7   0.0      0.82   2.2e+03     206     241 ..     430     465 ..     421     469 .. 0.68

  Alignments for each domain:
  == domain 1    score: 224.0 bits;  conditional E-value: 5.9e-70
                 EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH..HHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHH CS
  PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr..Elkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaee 253
                 + ++G G+fG+V k+++  +g+ +A+K+++k+  ++kk  +a +  E  +l k+  Hp++++l+++f++ +++ylv++y+++g+lf+ll+++g++ e+ + ++a +++ +le+lH n iiHrDLKpeN+Lldk+g++ ++DFGlak++++++e ++tl+gt  YmAPE++  ++ y+ +vD+WslG+++ye++tgk+pf  +   d +el++kil++k+++++       +   + ++ lle++  kRl a++
  MMETSP0890-20130614|1683_1  89 EAEIGVGAFGRVSKVRHIPSGRYYAMKTISKKVLRRKKIVQAEWrlERDVLVKIePHPYVIELVSAFQTMTSFYLVMKYLPNGELFELLRRRGTFAEDVAAFYAAETALALEHLHANYIIHRDLKPENLLLDKDGHVVVTDFGLAKMFQSHDELHRTLCGTDAYMAPEMVA-RRSYSYAVDLWSLGILIYEMVTGKTPFLAK---DTKELHRKILSEKVKFPSFLN----AATIQCLRALLERQVPKRLGAAK 333
                 678****************************987777766665568********77*******************************************************************************************************************.*****************************9...*****************9987....8899**************99875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.82
                 HHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT CS
  PF00069.20 206 dqleliekilkkkleedepkssskseelkdlikkll 241
                 d+++++ + ++++ ++++ + +++++e k++ik++l
  MMETSP0890-20130614|1683_1 430 DMQSCYTSLRSTDGSSHIAHRQEEDKEEKEIIKSML 465
                 566666666666666677777777777788888777 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0   1.2e-39   3.3e-36       3     221 ..      88     302 ..      86     329 .. 0.87

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 1.2e-39
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.keg 221
                 ++ ++G GafG+V + ++  + +   +k   K++ ++++   ++e   e +++ k+  hp +++l+ ++ +  ++++v++y+++G+L e+Lr++   ++  +    +a++ a ++e+L+++ ++HrdL   N Ll+++ +v ++DfGLa++ +++d+ +  ++      +mapE++ +++++ + D Ws G+l++E++t g++p+   +++e+ +++ +e+
  MMETSP0890-20130614|1683_1  88 VEAEIGVGAFGRVSKVRHIPSGRYYAMKTISKKVLRRKKIV-QAEWRLERDVLVKIePHPYVIELVSAFQTMTSFYLVMKYLPNGELFELLRRR--GTFAEDVAAFYAAETALALEHLHANYIIHRDLKPENLLLDKDGHVVVTDFGLAKMFQSHDELH--RTLCGTDAYMAPEMVARRSYSYAVDLWSLGILIYEMVT-GKTPFLAKDTKELHRKIlSEK 302
                 6789***************8777777777777775544444.799999********9************************************8..88999999999*********************************************6666664..44556778******************************.99***9999999888873333 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.9e-09   2.4e-05     139     196 ..     174     234 ..     125     254 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 8.9e-09
                 HCTHHHHHHHHHH.....HHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 139 sellelleeleer.....vlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                  ell++++ ++e      ++++ +al +   +  ++H+Dl+p Nll+d+d+ +v v Df++a 
  MMETSP0890-20130614|1683_1 174 FELLRRRGTFAEDvaafyAAETALALEH-LHANYIIHRDLKPENLLLDKDGHVV-VTDFGLAK 234
                 3333333333333444443444444444.58999**************777777.*****996 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.6e-05      0.18     105     165 ..     173     230 ..     154     240 .. 0.84
   2 ?   -3.4   0.0       1.3   3.6e+03      30      65 ..     289     326 ..     281     333 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.6e-05
   PF06293.9 105 LaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDl 165
                 L e+l++  ++ae +      + + + + +h+  + H+dl + n+lld+++   +v + D+
  MMETSP0890-20130614|1683_1 173 LFELLRRRGTFAEDVAAFYAAETALALEHLHANYIIHRDLKPENLLLDKDG---HVVVTDF 230
                 56666666667788888888899999************************9...9999998 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
   PF06293.9  30 lalrkyyrggllgklv.rdlyrfk.lgetrsvrEfrll 65 
                  + ++++r+ l++k+   + + +  ++ +r+  E ++ 
  MMETSP0890-20130614|1683_1 289 KDTKELHRKILSEKVKfPSFLNAAtIQCLRALLERQVP 326
                 45667777777777641333333345555555555555 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.9      0.18     5e+02     115     187 ..       7      79 ..       1     109 [. 0.61
   2 ?   10.7   1.5   0.00012      0.33      98     196 ..     436     533 ..     390     540 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.18
   PF06217.7 115 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 187
                 +++e   ++ ++e++ ++++++ a++ ++e k+    + +++ k++  ++ k+ ++++k++ +k++   +  a
  MMETSP0890-20130614|1683_1   7 EEMESALEDSEKENMEQQPEVRIAVSIKDEIKRDIVVADTQDFKRSIDEQFKQDENVQKDDDEKKNFAAKEEA 79 
                 4444444456666666777777777777777777666666666666666555555555554444443333333 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00012
   PF06217.7  98 qvlsetksihslqmlkhpqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvi 196
                 ++l+    ++ + ++ h+q ed+ ++  ++ +    a p++++ + ++  ++ + +q++ +pk++++ +k+kk++k+  +++++s++++ + + k++ +  
  MMETSP0890-20130614|1683_1 436 TSLRS---TDGSSHIAHRQEEDKEEKeiIKSMLAGLASPTSSQCDISSSCASDSFSQESITPKKPRPPRKRKKKNKDATETSASSEKQQERPTSKNTSIKQ 533
                 33333...333333444444444443346777788899999999999999999999999999999998777777777777777777778888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1030  (0.0753365); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.99u 0.42s 00:00:01.41 Elapsed: 00:00:01.24
# Mc/sec: 1117.01
//
Query:       MMETSP0890-20130614|1685_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-65  219.5   9.9    8.6e-65  218.9   6.9    1.3  1  PF03124.9 EXS family


Domain annotation for each model (and alignments):
>> PF03124.9  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   6.9   6.3e-69   8.6e-65       3     345 ..     120     512 ..     118     513 .. 0.85

  Alignments for each domain:
  == domain 1    score: 218.9 bits;  conditional E-value: 6.3e-69
   PF03124.9   3 lllfrvlllvilalllwalnllvlsksginyslifelspreslsgqelle...lasiltvllllllllylalvlleelkgaeeeave......viPlllllilvllllvpfkilsrssRawllrtlkrillapikpvkfrdfflaDqltSlakvlgdleltvclyfs.geit...ekq........................grcssskllve...llvlslPyliRflQclrryrdtkksfphlaNalKYstaipvvvlsalyksvesseasqrlfilwilavivnsiysfiWDvkmDWgL...................fkknkksknflLR..kklllpkkviYylaividlilRftWilklsne.....rlstiseselgvfllallEvlRRwiWvffRvEnEhv 345
                 +++fr ++ ++ + ++w+l l+v+ ++++n+ ++f++ ++  +sg ++ +    a++ t+ ll +ll+y++++++  l     ++++      +iP+ +++ +++ l+ p+     + R+ l+r+l +il+ap+++v+f d+++aD+l S++kv+ d   t+c++ + + ++   + +                        +rc+    +++   +l ++lP ++Rf+Qclr+y d ++   h++Na+KY+++++v++ sal  ++  +         w++ ++++s ys +WDv+mDWgL                   f +++k +  + R   + ++p++++Y la++ d++ Rf+W+ +l+++     rl+ +   + +v +lal+E+ RR++W ffR+E Ehv
  MMETSP0890-20130614|1685_1 120 WPVFRAAGALVAWHWMWGLSLHVWASYRVNVDFLFDTVYEDTSSGATASNvydEAALETIALLASLLVYYKATYHGGLPLFVSNVIDpsdlaaFIPIGVVCTVFVRLVSPW-----NRRKHLWRSLGKILVAPVSQVRFVDTYIADVLSSMVKVFLDTLWTACYVGTgDVFRaqvS-TtnylnkkddtpkeeadealmdpemTRCTTGLAYRNiavPLACLLPLWFRFAQCLRKYNDVGQR-IHILNAAKYALSLFVALSSALELVQHRH--------TWLALFCISSAYSWLWDVVMDWGLrfrwhkpkdadlieihaehFGHTDKMRFIFERpkYRTMYPRHWWYSLAVAADIVGRFVWLATLIPPtgfgkRLN-SVIPDYLVPILALVELARRCVWGFFRLEHEHV 512
                 799***********************************77777776666655589999999999*******9999999999999999999999*****************9.....78************************************************9544444441.045566666677777777777777656655555544888*************************.***************9999998877765........59**********************98877777777766666663333333666667445689**************************9855554333.2245899999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:01.04
# Mc/sec: 1412.47
//
Query:       MMETSP0890-20130614|1688_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.6  13.0     0.0031   17.0   9.0    1.3  1  PF04438.11 HIT zinc finger
  ------ inclusion threshold ------
      0.086   12.5   0.0       0.16   11.6   0.0    1.4  1  PF08864.5  UPF0302 domain


Domain annotation for each model (and alignments):
>> PF04438.11  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   9.0   4.5e-07    0.0031      14      30 .]       1      17 [.       1      17 [. 0.95

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.5e-07
  PF04438.11 14 YkCpkCntryCSLrCyk 30
                Y+Cp+C+++yCS++C +
  MMETSP0890-20130614|1688_1  1 YSCPRCREPYCSVECCR 17
                9**************86 PP

>> PF08864.5  UPF0302 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05      0.16      18      51 ..      64      97 ..      59     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.3e-05
   PF08864.5 18 reavwiLnyllsheelLervhFvenaekkprale 51
                ++a wi   l s+++lL  ++F+++a++++ +l 
  MMETSP0890-20130614|1688_1 64 NDAQWIQSELESDPHLLDAIQFIDTASNRAATLS 97
                68999************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       992  (0.0725571); expected 273.4 (0.02)
Passed bias filter:                      523  (0.0382534); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.90
# Mc/sec: 524.54
//
Query:       MMETSP0890-20130614|1687_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-40  137.2   1.2    3.9e-40  136.5   0.8    1.4  1  PF00638.13 RanBP1 domain
    0.00089   18.8   0.2     0.0023   17.5   0.1    1.7  1  PF00568.18 WH1 domain


Domain annotation for each model (and alignments):
>> PF00638.13  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.8   5.8e-44   3.9e-40       1     121 [.      96     223 ..      96     224 .. 0.95

  Alignments for each domain:
  == domain 1    score: 136.5 bits;  conditional E-value: 5.8e-44
                 ----S-TTEEEEEEE--EEEEEETTT.......TEEEE-----EEEEEETTT--EEEEEEETTTTEEEEEEE--TTS-EEE----TSEEEEEEEE-TTSS-EEEEEEEE-SSHHHHHHHHHHHHHHHH CS
  PF00638.13   1 evksgEEdEevlfkqraKLfrfdaek.......kewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkplagsdrslvwtaadaadeeakleqlaikfkkkeeadefkkkfeeakk 121
                 evk++EEdEe++fk+ra+L+rf++         kew eRGvG+ K+lk+++++k+RllmR+++++k+++Nhvi ++++l+p+ag d+s+vw a d++++e   e +ai+f ++e+a +fk +f +a++
  MMETSP0890-20130614|1687_1  96 EVKTLEEDEEIIFKMRARLYRFAETLlnkgtgkKEWIERGVGEAKLLKHREHSKIRLLMRQEKTMKIIVNHVIDPRIQLQPNAGNDKSWVWGAWDFSEGELVDEVFAIRFANAENATKFKDAFTNAQQ 223
                 89********************976444455559*******************************************************************************************997 PP

>> PF00568.18  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.4e-07    0.0023      10     110 ..     106     221 ..      98     222 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.4e-07
                 EEEEE-EEEEEE........ETTTEEEE.EE---EEEEEETTTTEEEEEEE-S----EEEEEE--SS---.....B-----EEEE----S.....-EEEEESSHHHHHHHHHHHHHH CS
  PF00568.18  10 tiasavaqvyla......dpakketWikakhagavslvkdstqnsyflrlvklqdakvvieqeiyknley.....nqarqkfhtfedera.....vvGLnFaseeeakkFakkvqea 110
                 +i++ +a++y        ++  k++Wi+ + +g+++l k+  +   +l +++ +  k+++++ i + ++      n ++  ++ +  +++     v+++ Fa+ e+a+kF  ++++a
  MMETSP0890-20130614|1687_1 106 IIFKMRARLYRFaetllnKGTGKKEWIE-RGVGEAKLLKHREHSKIRLLMRQEKTMKIIVNHVIDPRIQLqpnagNDKSWVWGAWDFSEGelvdeVFAIRFANAENATKFKDAFTNA 221
                 6777777777541111114567888***.***********************99***********9998822222345566888887777777779***************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.69
# Mc/sec: 920.34
//
Query:       MMETSP0890-20130614|1689_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.9   0.0    1.9e-16   60.1   0.0    1.4  1  PF08030.7  Ferric reductase NAD binding domain
    3.1e-08   33.3   0.0    7.7e-06   25.6   0.0    2.6  2  PF08022.7  FAD-binding domain
  ------ inclusion threshold ------
      0.043   13.3   0.0      0.074   12.6   0.0    1.3  1  PF00742.14 Homoserine dehydrogenase


Domain annotation for each model (and alignments):
>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   4.3e-20   1.9e-16       2     148 ..     198     395 ..     197     396 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 4.3e-20
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxx.....................................xxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF08030.7   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvress..slewfkdvLneleeekse..........gnieihiYlTseyea..........edasdqlissiegen.....................................vdavsgtr......fvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkklv 148
                  +v+l+++GiG+tp++s+l  +lk     ++k + ++++wvv + +   +ewf   + ele e  +          +  eihi++T+  +           ++ ++                                               +      +       + i +gRP ++++++++ ++ ++  +gv  CG p + k+++ ++
  MMETSP0890-20130614|1689_1 198 GTVMLIGAGIGMTPCASVLTAMLKYRWRLNFKPEILHFYWVVAHPDvrAFEWFIHRIAELEYELLKqrhsgavaprNYAEIHIFVTRPPKDcpndlsmrsaSTITEF--------SndaksdpkpvftanqlfaemlypqtpaanmtaameqpK------HatnrfqDTWIWNGRPVWSDIFSSVRNQRQHRDIGVCFCGTPFIGKDLAAMC 395
                 68********************9999999*************9876337*****9998887764433466788887889********99887866654333222222........133445666888888888888888777766655555442......045556588999***********************************99988 PP

>> PF08022.7  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.7e-09   7.7e-06      16      61 ..      12      56 ..       3      66 .. 0.83
   2 !    4.8   0.0    0.0049        22      59     101 ..     116     187 ..     108     191 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.7e-09
   PF08022.7 16 viklklkkpkks.lkykpGqyvfinipslsklflqsHPFtiasaped 61
                v+ ++++   ks + ++ G yv +n+p +s+   ++HPFti sa+ d
  MMETSP0890-20130614|1689_1 12 VLAVHFRPIDKSlFDFEEGTYVMLNCPFISQA--EWHPFTISSARGD 56
                566777766666699***************66..*********9985 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0049
   PF08022.7  59 peddkielvikak......sgltkklakkllss........................lenkkaklkvlidGPY 101
                 +  d+++++ik++      +++tkkl+ +l  +                        +   ++k  + idGP 
  MMETSP0890-20130614|1689_1 116 AYHDFVSVHIKVHerddgtETWTKKLKDYLEMMaphrkypfhftrrdtrgelqigrqF-GPDTKQILRIDGPH 187
                 448999999999733333357******9988778888888887777777777777653.34444456677776 PP

>> PF00742.14  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.074     116     174 ..     158     216 ..     131     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
  PF00742.14 116 aereeekleasvkpelvpkehplasvkgsdnavsietdrlgelvisGpgaGaevTAsav 174
                 ++r++++ e++++ ++ p+++ + +++g + a +++ + +g++++ G+g G+++ As +
  MMETSP0890-20130614|1689_1 158 FTRRDTRGELQIGRQFGPDTKQILRIDGPHAAPAMHYKHYGTVMLIGAGIGMTPCASVL 216
                 455688999**********************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.46s 00:00:01.11 Elapsed: 00:00:00.74
# Mc/sec: 1340.66
//
Query:       MMETSP0890-20130614|1692_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.55s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 934.58
//
Query:       MMETSP0890-20130614|1690_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-34  115.4   0.6      3e-15   55.9   0.0    3.2  3  PF00575.18 S1 RNA binding domain


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.6e-09   2.1e-05       2      74 .]      65     141 ..      64     141 .. 0.97
   2 !   32.1   0.0   5.7e-12   7.8e-08       7      72 ..     161     222 ..     156     224 .. 0.94
   3 !   55.9   0.0   2.2e-19     3e-15       3      74 .]     236     308 ..     234     308 .. 0.97

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.6e-09
                 SSTT-EEE--EEEEET.TEEEEE--.--EEEEEGGGS-CC...EEEECCCCEETT----EEEEE-EEETT.EEEESS CS
  PF00575.18   2 pekGevvkGtVtsvtk.gGafVdlgngvegfipiseissd...rvedpeevlkvgdevevkvlkvdkerkriiLsik 74 
                 +++G++v G+V +++  + a +++g++  +++p+ e        +e++ + +++g+e+e+ ++   ++++++ Ls+k
  MMETSP0890-20130614|1690_1  65 FNVGDRVVGRVEKFDGpQRAMIEIGAKTFALLPLREATIApisSGENIADFITIGEEYEFEIVSDTRDDGQVMLSLK 141
                 689************99*********************9999********************************986 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 5.7e-12
                 EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEE CS
  PF00575.18   7 vvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLs 72 
                 v++GtV++v++gGa+V ++ g ++f+p s+i    +    ++  vg+   +k+l+v++e++++++s
  MMETSP0890-20130614|1690_1 161 VIEGTVVQVNRGGAIVLVE-GLRAFCPGSHIL---GSAVATEALVGQPMQLKFLEVNRETSKLVVS 222
                 89*****************.************...5799***********************9988 PP

  == domain 3    score: 55.9 bits;  conditional E-value: 2.2e-19
                 STT-EEE--EEEEETTEEEEE--..--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
  PF00575.18   3 ekGevvkGtVtsvtkgGafVdlg.ngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74 
                 + G+ v+G+V+++ ++Gaf+dl     +g+++is+is drv d+  +l+ g  ++ +vl+ dk ++ri Ls+k
  MMETSP0890-20130614|1690_1 236 QRGNLVQGVVSAIKNYGAFIDLAqGSLSGLLHISQISYDRVTDIQSTLQEGMPIKCMVLDSDKSNGRIALSTK 308
                 679********************99**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.52s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|1693_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.45s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 270.07
//
Query:       MMETSP0890-20130614|1694_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-38  130.9   7.7    3.3e-20   72.0   0.4    2.6  2  PF00505.14 HMG (high mobility group) box
      3e-17   62.6   8.5    1.4e-09   38.1   0.8    2.7  3  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.16   10.9   9.5        0.2   10.5   5.0    1.9  2  PF11398.3  Protein of unknown function (DUF2813)
        0.3    9.9   9.6       0.47    9.3   6.6    1.3  1  PF08493.5  Aflatoxin regulatory protein
          5    7.2  16.9        3.6    7.6   0.2    3.5  3  PF04690.8  YABBY protein


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   1.0   1.4e-20   3.9e-17       1      68 [.      72     139 ..      72     140 .. 0.98
   2 !   72.0   0.4   1.2e-23   3.3e-20       1      69 []     167     235 ..     167     235 .. 0.99

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.4e-20
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 pkRp+s ++ f+ke+ ++++   P++ +++++++lge+W++ls+++K+++++ ++++k++y +e++++
  MMETSP0890-20130614|1694_1  72 PKRPMSPYVTFVKEKWKEVHDSLPGAAAKDVMRTLGEQWNALSDSQKEKWKNLSDEDKARYASEMQAF 139
                 8*****************************************************************98 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 1.2e-23
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 pkR  saF+lf++e+r+ lk  nP+l+++eis++lg+ Wk   +  K+pY ++ +++++ey k+++eY+
  MMETSP0890-20130614|1694_1 167 PKRGASAFLLFANEKRKALKDANPTLHNTEISRMLGAIWKTADDTTKAPYVQAEAEARKEYGKAMEEYR 235
                 8*******************************************************************6 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.8   5.2e-13   1.4e-09       1      70 []      69     136 ..      69     136 .. 0.93
   2 !   29.0   0.1   3.5e-10   9.5e-07       1      70 []     164     231 ..     164     231 .. 0.95
   3 ?   -4.0   0.0         5   1.4e+04      16      26 ..     331     341 ..     330     345 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 5.2e-13
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                 p  pkr+++ Y+ Fv+++ +e   + p  +   ++v++ ++e+W als+++Kek+++   edk+ry +e+
  MMETSP0890-20130614|1694_1  69 PDAPKRPMSPYVTFVKEKWKEVHDSLPGAA--AKDVMRTLGEQWNALSDSQKEKWKNLSDEDKARYASEM 136
                 5679***********999999988888775..9**********************************998 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.5e-10
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                 p+ pkr  +A++lF+ ++r+ lk  +p       e+s+ +++ Wk+  +  K +Y +  +e +k+y + +
  MMETSP0890-20130614|1694_1 164 PNAPKRGASAFLLFANEKRKALKDANPTLH--NTEISRMLGAIWKTADDTTKAPYVQAEAEARKEYGKAM 231
                 899**************************5..89***********************9999***998865 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 5
   PF09011.5  16 qtmrpelkreg 26 
                 q+m+++l+++ 
  MMETSP0890-20130614|1694_1 331 QQMQQQLAQQA 341
                 78999998875 PP

>> PF11398.3  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.1   2.9e+02      87     121 ..     192     226 ..     184     245 .. 0.83
   2 ?   10.5   5.0   7.3e-05       0.2     178     257 ..     265     342 ..     246     358 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.1
   PF11398.3  87 eekarryrklkalwvkeedgleriyyrvegeleed 121
                  ++++  r l a+w++ +d ++  y + e+e +++
  MMETSP0890-20130614|1694_1 192 LHNTEISRMLGAIWKTADDTTKAPYVQAEAEARKE 226
                 56777789999******************998754 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 7.3e-05
   PF11398.3 178 krlekrldnlvrrllkkpqklsekelkselealssLlehYfleksaskkkkrkkrkssskeqklweklkslnqllkeekn 257
                 ++++ + ++  + +  +pq l+++ ++s+++++  L +hY  ++++ ++++   + +++++q  +++l++++q l+++  
  MMETSP0890-20130614|1694_1 265 QSSQPNNSQYHQSMQGQPQYLQQQTVQSSYQSMPPLQQHYAPQTTQYHQSHIGPEMMQQYSQ--MQSLQQMQQQLAQQAG 342
                 2344444555568999************************9977666555555555555544..4466888888888764 PP

>> PF08493.5  Aflatoxin regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.6   0.00017      0.47      18     110 ..     260     351 ..     239     376 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00017
   PF08493.5  18 taattsssapqnpvqsnpssdqtPvvtphtPvgtsevspklshqspPaevelwgsiLspdasnqdvtdLssLlsvdtdvgqllaslspssled 110
                  ++t  ss+p+n    +  + q+  + ++t   + +  p l+++  P++++  +s ++p++++ + +++ sL  ++ +++q  +  +ps+ ++
  MMETSP0890-20130614|1694_1 260 VGTTNQSSQPNNSQYHQSMQGQPQYLQQQTVQSSYQSMPPLQQHYAPQTTQYHQSHIGPEMMQ-QYSQMQSLQQMQQQLAQQAGGSAPSMQQH 351
                 4667777777555444455545555555666666666688888*****************998.899*********99999887766665554 PP

>> PF04690.8  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0013       3.6      99     161 ..      49     111 ..      29     118 .. 0.78
   2 ?    6.2   0.1    0.0036       9.9     102     151 ..     147     196 ..     105     205 .. 0.70
   3 ?   -0.3   4.5      0.36     1e+03      42     123 ..     242     322 ..     235     362 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0013
   PF04690.8  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                 +++++   +e  +   v r P+  +r  s y  f+ke  + +  s P  + ++ + +    W 
  MMETSP0890-20130614|1694_1  49 QMVQQALPREKGQRRGVRRNPDAPKRPMSPYVTFVKEKWKEVHDSLPGAAAKDVMRTLGEQWN 111
                 333445555666667799*************************99999999998888888776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0036
   PF04690.8 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishre 151
                    + ++ +r ++  + P+  +r  sa+  f  e  + +k +nP +   e
  MMETSP0890-20130614|1694_1 147 VIRRGHDGARRKRNRKDPNAPKRGASAFLLFANEKRKALKDANPTLHNTE 196
                 33445556666777899***************************987655 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.36
   PF04690.8  42 CtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrq 123
                   +lls ++++++ +l+++   ++s +++  + +++  +   ++ ++++ +s+++s+  l+++   ++++ ++    Pe  q
  MMETSP0890-20130614|1694_1 242 QQELLSPHIQQHHLALSSVGTTNQSSQPNNSQYHQSM-QGQPQYLQQQTVQSSYQSMPPLQQHYAPQTTQYHQSHIGPEMMQ 322
                 5678888888888888888876766666644433333.23334444555666666666666666666666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1103  (0.0806758); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:01.06
# Mc/sec: 870.37
//
Query:       MMETSP0890-20130614|1697_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-80  268.2   0.0    3.2e-80  267.9   0.0    1.1  1  PF01379.15 Porphobilinogen deaminase, dipyromethane cofactor binding domain
    4.7e-19   68.1   0.0    1.1e-18   67.0   0.0    1.6  1  PF03900.10 Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01379.15  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.0   4.7e-84   3.2e-80       2     211 ..      31     243 ..      30     247 .. 0.97

  Alignments for each domain:
  == domain 1    score: 267.9 bits;  conditional E-value: 4.7e-84
                 EEEEE--SHHHHHHHHHHHHHHHHH---.....-EEEEEE---------------------TSHHHHHHHHTTS-SEE---GGGS-SS-----------------EEEE-..SS-SSSTTS----EE----HHHHHHHHHH-TTSEE---------HHHHHH----S-EEEE---------GGGES..E-TTTS-----------EE-TT-HHHH CS
  PF01379.15   2 irigtRkSkLAliqaelvkeklkkkepd.....leveivtiktkGDkildkpLakiggkglfvkeleeallekeidlavHSlKDvPtelpeglelgailkRedprDalvskkssaksleelpkgavvGtsslRRsaqlkkkrpdlkieslRGNvdtRlkKldegeydaiilaaAGlkRlgledriaesleveellpavgqGalaieirkddkela 211
                 +rigtR+S LAl+qa+l ++ lkk++p+      ++++  +kt+GD ildk+L++iggkglf+kel+ all++e+d+ vHS+KDvPt lpe+ +l + l+Red rD+++s   ++k+l++lp+g+v+G++slRR+aq+++k p lk  ++RGNv+tRl+Kldeg +da +la AGlkR+++e++ +  ++ ee+lpav+qGa++i++r+dd++ +
  MMETSP0890-20130614|1697_1  31 LRIGTRGSPLALAQAHLTRDLLKKQFPEelgeeGAIQLCVMKTQGDMILDKALSEIGGKGLFTKELDVALLQNEVDICVHSMKDVPTWLPENTVLPCTLEREDTRDVFIS--PTSKDLASLPDGSVIGSASLRRQAQILAKNPTLKCVNFRGNVQTRLRKLDEGVVDATLLALAGLKRMDMEHEATAIIDWEEMLPAVAQGAIGIQCREDDQRSL 243
                 79*************************988887899**************************************************************************..5799**********************************************************************99***********************9865 PP

>> PF03900.10  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.5e-22   1.1e-18       2      72 ..     256     326 ..     255     328 .. 0.93

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 1.5e-22
                 HHHHHHHHHHHHC---TTS----EEEE-.---.EEEE--B-----..--B---B---GGGTTT---HHHHHH CS
  PF03900.10   2 ltvlaERaflreLnGGCqvPigayaele.dgerlrLtglvgsadgkekvfevevrgeleeaeelGkelaeel 72 
                  +v++ERafl++L+G+C++Pi+++a+++ + + l ++glv+++dg+e + +ve++g++++a+++G +++e +
  MMETSP0890-20130614|1697_1 256 AAVACERAFLEVLDGNCKTPIAGHAQVNtETNTLLFKGLVAKPDGSE-IYRVERSGSVDDAVKVGRDAGEYI 326
                 589*************************97778************99.******************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.86
# Mc/sec: 969.69
//
Query:       MMETSP0890-20130614|1696_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-10   38.9  29.3    7.3e-06   24.7   9.2    2.4  2  PF00474.12 Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> PF00474.12  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   9.2   5.4e-10   7.3e-06       2     165 ..      68     230 ..      67     243 .. 0.83
   2 !   19.5   5.6     2e-08   0.00027     205     406 .]     332     538 ..     315     538 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.4e-10
  PF00474.12   2 flagrsltgfvlglslaasnisaasfvGlaGavaasGlav.vllelgalllvlllllllaerlrna.galTlpdylskRfkgkrilvylsalslllvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliiv 165
                  +agr++    ++  + ++   aa ++  + +++++G+++ ++++ ga++ vll ++l +e+ r+a    T+ +++ +R+++    + +    ++l  ++  s  l+gg + ++ + G ++++  +l+   ++lYt+ GGl A+ +   i + ++ v +li+ +++
  MMETSP0890-20130614|1696_1  68 NTAGRDIKIGLTASVIVSQWTWAATLLQSSNVAWQYGVSGpFWYASGATIQVLLFGILAIEVKRRApTCHTVCELVLARWGHAA-HKTFIFF-SFLTSIIVTSMLLLGGSATMKALAGCDVNLTSFLIPWGVILYTASGGLKATFLASYIHTAIIFVILLIM-VYS 230
                 589999988888888888888899*************9875899****************9999662568***********988.4444333.34444455667799*********************************************9987766555.444 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2e-08
  PF00474.12 205 lslwlglvlGvagl..........philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkg..vlklvelafaglasavlavillalfwkrvneqGAlagliiG 406
                 ls ++gl++G++ +          +   +  +aak a+a    +l +++++ + ++++ + +l a +l       + +    s ++ p  + ++ ++  a ++  + + ai+st ++  ++ ss+ + D+Y   +  + a+ k ++++sr +++  +  + +lav  +q g  + ++  ++   ++sav+++  l + w+++   GA+++ + G
  MMETSP0890-20130614|1696_1 332 LS-GPGLMFGIINIignfgtvfvdQSYWQSAIAAKPAAAHKGYMLGGMVWFTIPFALATACGLAATALQLP----IDSFEAGSGLVPPAVATHIYGDKGALMITIMLFMAIVSTGSAESIAVSSIAAYDIYRTYFNPE-ATGKDIMRISRYVIVLFGGCMGVLAVILNQIGlnLGWVYLFMGICIGSAVIPLWNL-MTWDQASGTGAIIAAWSG 538
                 33.48888888888888888888888888899988776555556778**********99999999888765....6677788999***********9876555555579*************************9999.9********99777777766666666666666447777777777899999999887.78***********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       744  (0.0544178); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.37s 00:00:01.48 Elapsed: 00:00:00.79
# Mc/sec: 2220.42
//
Query:       MMETSP0890-20130614|1699_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-69  233.0   0.1    4.8e-69  232.5   0.1    1.2  1  PF00733.16 Asparagine synthase
    1.4e-33  115.1   0.0    3.6e-33  113.8   0.0    1.7  1  PF13537.1  Glutamine amidotransferase domain
    9.8e-23   80.4   0.0    2.6e-22   79.0   0.0    1.7  1  PF13522.1  Glutamine amidotransferase domain
    1.2e-07   31.0   0.0    2.4e-07   30.0   0.0    1.4  1  PF12481.3  Aluminium induced protein
    7.7e-06   24.7   0.0     0.0075   14.8   0.0    3.2  3  PF00310.16 Glutamine amidotransferases class-II
     0.0032   16.3   0.0     0.0063   15.3   0.0    1.4  1  PF02540.12 NAD synthase


Domain annotation for each model (and alignments):
>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.5   0.1   2.1e-72   4.8e-69       1     255 []     247     511 ..     247     511 .. 0.97

  Alignments for each domain:
  == domain 1    score: 232.5 bits;  conditional E-value: 2.1e-72
                 HHHHHHHHHHHHHGGG-SEE-EE-----HHHHHHHHHTT...........................TSSEEEEEE---TSS-..-HHHHHHHHHH---EEEE----HHHHH---HHHHHHHT-----HHHHH---HHHHHHH-.---SEEE-----TTT-----------S-HHHHHHHHHHHTTT--...............................-------TT---EEE-TT--HHHHHHHHTB-GGGTEETTEE..........SHHHHHHH....TS-S-HHHHT--- CS
  PF00733.16   1 elrelLkdavkrrlrsdvpvgvllSGGlDSsviaalaar..........................esdpplktfsvgfeeseadeaglaelvaehlgtehveinvteeellellpevikhleepdatddsigiplylasrlaresgvkvvLsGeGADElfgGysrhrrryesaglegllerellrklrallkaalesekeplereelldeltrlssrnlerddrvsmahglEvRvPflDerlvefalslppelklrlgle..........KliLReaa....eellpeeilerpK 255
                 +lr ++++av+rr++sdvp gvllSGGlDSs++a++a+r                          ++ ++l++fsvg+e+s+  ++++a+++ae +gt h+ + +t +e l++++evi+hle++d t++++++p++l+sr++++ gvk+vLsGeGADE+++Gy     ++++a+++ +l+ el +kl++l+ +++                         r+++++ma+glE+RvPflD++++e+a++++pe+k+ +  +          K+i+R+a+      +lp++il+r+K
  MMETSP0890-20130614|1699_1 247 KLRAVFEQAVERRMMSDVPWGVLLSGGLDSSLVASVAQRilhryqrqgqsvapntlsgdvdhsseRWMSRLHSFSVGLEGSP--DLAAAKKAAEFIGTVHHPYTFTLQEGLDAVKEVIYHLETYDVTTIRAATPMFLMSRKIKAMGVKMVLSGEGADEILAGY----LYFHKAPNKTELHAELKDKLSQLYIYDC------------------------LRANKSTMAWGLEARVPFLDQDFLEVAMNIDPEEKMIKVHDkdergiarieKYIMRKAFdtpdDPYLPDNILWRQK 511
                 5899*************************************************************99***************..*******************************************************************************....*************887777777777777........................************************************98888999****************9999**********99 PP

>> PF13537.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   1.6e-36   3.6e-33       1     123 [.      68     202 ..      68     203 .. 0.93

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 1.6e-36
   PF13537.1   1 hrrlaiidseagaqPmvss...........edgrvvivfnGeiyNykelreeleakg..ykfrtesDtevllalleeleggeealkrlnGmfAfalwdkkekrlllaRDrlGikpLyygkdegdallfaSelkall 123
                 h+rlai+d+e+gaqP+ ++            +g++v+++nGeiyNy+el +elea+g  y+ rt sD+ev++ ++++  g+ +a+++l+Gmf f+++d++++++ +aRD++Gi+ Ly+g+  + +l+f+Selka++
  MMETSP0890-20130614|1699_1  68 HERLAIVDPESGAQPLWAQaqpkkpgymemTEGEIVVAANGEIYNYRELYAELEAAGckYEPRTGSDCEVIIPMVKK-YGLVKACEKLRGMFGFVVFDRRSGEYGAARDHIGITSLYVGWGIDGSLWFSSELKAIA 202
                 89**************985578888888888999*********************98335679*************9.7*****************************************9956**********85 PP

>> PF13522.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.1e-25   2.6e-22      14     133 .]      64     197 ..      48     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.1e-25
   PF13522.1  14 vvlgHvRlatvglseeegaqPf....ssedgr............vvlvhNGeiynyeelreelpakgla..frtrsDsevllallkewG.ekalerldgmfafaiwdkrekklllardrlgikpLyygkt.gdrllfase 133
                  +++H Rla+v+++   gaqP+    +                 +v++ NGeiyny+el +el+a g +   rt sD ev++ ++k++G  ka e+l+gmf f++ d+r +++  ard++gi +Ly+g   +++l f+se
  MMETSP0890-20130614|1699_1  64 HAIAHERLAIVDPE--SGAQPLwaqaQ----PkkpgymemtegeIVVAANGEIYNYRELYAELEAAGCKyePRTGSDCEVIIPMVKKYGlVKACEKLRGMFGFVVFDRRSGEYGAARDHIGITSLYVGWGiDGSLWFSSE 197
                 689**********7..99999965540....23344455555559********************66555599*****************9999**********************************998999999987 PP

>> PF12481.3  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     1e-10   2.4e-07     125     198 ..     150     222 ..     144     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1e-10
   PF12481.3 125 vvkdleGsfafvlyDkkaktvfvaldadgkvplfWGiaadgsvvlsddvelikksCgksfapFPkGclfssegg 198
                   ++l+G f+fv++D+++    +a d+ g  +l+ G   dgs+ +s +++ i   C++    F  G  +ss++g
  MMETSP0890-20130614|1699_1 150 ACEKLRGMFGFVVFDRRSGEYGAARDHIGITSLYVGWGIDGSLWFSSELKAIAVDCARL-EQFKPGHCWSSKKG 222
                 56789***************************************************985.56766666666644 PP

>> PF00310.16  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.05   1.1e+02      15      43 ..       4      26 ..       1      38 [. 0.85
   2 !   14.8   0.0   3.3e-06    0.0075     198     260 ..      65     143 ..      60     146 .. 0.82
   3 !    4.6   0.0    0.0044        10     314     360 ..     149     197 ..     143     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.05
                SCCHHHHHCCEGGGTT----TSB..-BE- CS
  PF00310.16 15 rkvvekalealerLehRGgvdgntGDgaG 43
                + +  k++e  +rL+hRG       D++G
  MMETSP0890-20130614|1699_1  4 SALRAKLIECAHRLRHRGP------DWSG 26
                5667899***********9......8887 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.3e-06
                 EEB--C--.....SSSS-SCTTSSSEE...........EEEEE---TTHHHHHHHHHHHCTT.SS....HHHTC..S.. CS
  PF00310.16 198 aivHvRfs.....TntspswenahPfr...........vlahNGeintikgnknllkareeslkseefgslkklrPive 260
                 ai+H R +        +p w +a+P             v+a NGei++++++  +l+a + + + ++  +++ + P+v+
  MMETSP0890-20130614|1699_1  65 AIAHERLAivdpeSGAQPLWAQAQPKKpgymemtegeiVVAANGEIYNYRELYAELEAAGCKYEPRTGSDCEVIIPMVK 143
                 6777777643333456899***************************************999987744448888888776 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0044
                 HHHHHHC--EEEEEEETTE..EEECS-EEEEEESEEEEETTEEEEEBSS CS
  PF00310.16 314 klmepwdGpaaivftdgkk..vgasldrnglRparygitedglvvvase 360
                 k +e+++G++ +v++d +   +ga++d+ g+  + +g   dg ++++se
  MMETSP0890-20130614|1699_1 149 KACEKLRGMFGFVVFDRRSgeYGAARDHIGITSLYVGWGIDGSLWFSSE 197
                 5689************986669*********999999999999999998 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-06    0.0063       5      49 ..     248     294 ..     245     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHHSTT-EEEE-..-----HHHH---HHHHHHTCGCEEE CS
  PF02540.12   5 lvdflkeyvkksgakgvvlG..lSGGvDSalvaalavkalgkenvla 49 
                 l ++ ++ v+++ ++ v  G  lSGG+DS+lva +a+++l + +  +
  MMETSP0890-20130614|1699_1 248 LRAVFEQAVERRMMSDVPWGvlLSGGLDSSLVASVAQRILHRYQRQG 294
                 56677888888888888888668****************97766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:01.01
# Mc/sec: 1520.86
//
Query:       MMETSP0890-20130614|1702_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.8   0.6       0.62    9.5   0.1    2.0  2  PF04156.9 IncA protein


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.029   3.9e+02     110     139 ..       5      34 ..       1      53 [. 0.50
   2 ?    9.5   0.1   4.6e-05      0.62      11      93 ..     198     286 ..     189     290 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.029
   PF04156.9 110 eledleedlellqeelksleerlesleesi 139
                 +l+dl++ l+++ + l++l + l+++++s+
  MMETSP0890-20130614|1702_1   5 KLNDLRDPLKDAAKVLEELPDLLKKVASSV 34 
                 333444444444433333333333333333 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 4.6e-05
   PF04156.9  11 liilgll.liasGial.lvlfasslgvlisallgivliAlgvvLlalgllllllkapvqseedekiee....srlqeelsesesqlsel 93 
                 ++i++++ li++ i++ l  ++++ +v ++++  iv++ + +++l + l++++   +  ++++++ +       +  + ++ ++ql+ l
  MMETSP0890-20130614|1702_1 198 FLIASIVvLIIAIIFTsLHKCPHDVPVDCFPFETIVMLLVLLLVLLFSLYFFSNILNIGMSKKKPRRLgfifKHSTNDSTARSAQLAYL 286
                 6788888688888888**********************999999999999998777777777777666666655555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      593  (0.0433733); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:01.12
# Mc/sec: 892.22
//
Query:       MMETSP0890-20130614|1701_1  [L=869]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-77  257.3   0.0    1.1e-44  151.6   0.0    2.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.9e-10   39.5   5.8      0.013   15.4   0.0    5.3  3  PF13401.1  AAA domain
      7e-10   39.6   0.0    0.00022   21.8   0.0    3.4  2  PF13207.1  AAA domain
    7.4e-09   35.5   0.0     0.0022   17.7   0.0    2.8  2  PF13671.1  AAA domain
      1e-07   31.7   0.0        0.1   12.1   0.0    3.7  3  PF01637.13 Archaeal ATPase
    1.1e-07   30.9   0.0    4.3e-05   22.5   0.0    2.5  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    1.2e-07   32.1   9.9     0.0073   16.5   0.0    4.5  3  PF13191.1  AAA ATPase domain
    4.4e-07   29.7   0.0      0.039   13.7   0.0    3.2  3  PF13173.1  AAA domain
    8.2e-07   28.9   0.0      0.016   14.9   0.0    2.8  2  PF07724.9  AAA domain (Cdc48 subfamily)
    3.6e-06   26.3   1.6      0.077   12.2   0.0    2.9  3  PF01695.12 IstB-like ATP binding protein
    6.3e-06   26.1   0.0       0.15   11.9   0.0    2.7  2  PF13521.1  AAA domain
    9.5e-06   25.2   0.0     0.0022   17.5   0.0    2.5  2  PF00308.13 Bacterial dnaA  protein
    1.3e-05   25.2   0.0      0.044   13.8   0.0    2.8  2  PF00910.17 RNA helicase
    1.9e-05   24.3   0.3      0.085   12.4   0.0    3.5  2  PF07728.9  AAA domain (dynein-related subfamily)
    1.9e-05   23.6   0.0      0.082   11.7   0.0    2.3  2  PF05673.8  Protein of unknown function (DUF815)
    1.9e-05   24.2   0.0      0.061   12.7   0.0    2.6  2  PF01443.13 Viral (Superfamily 1) RNA helicase
    3.6e-05   23.3   1.4        4.7    6.6   0.0    4.4  4  PF05729.7  NACHT domain
    5.7e-05   23.3   0.0      0.049   13.8   0.0    2.9  2  PF13238.1  AAA domain
    7.2e-05   22.1   8.1       0.91    8.7   0.0    4.7  4  PF13481.1  AAA domain
    0.00033   19.7   0.7       0.09   11.7   0.0    3.0  3  PF06414.7  Zeta toxin
    0.00035   19.2   0.0      0.033   12.7   0.0    2.3  2  PF06068.8  TIP49 C-terminus
    0.00074   18.2   0.0       0.82    8.2   0.0    2.2  2  PF03215.10 Rad17 cell cycle checkpoint protein
     0.0012   17.9   0.1      0.058   12.4   0.0    2.7  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0013   18.4   0.1      0.017   14.8   0.0    2.5  2  PF09336.5  Vps4 C terminal oligomerisation domain
     0.0016   18.0   0.7       0.26   10.9   0.0    2.9  2  PF13245.1  Part of AAA domain
     0.0034   16.8   0.0        1.6    8.1   0.0    2.7  2  PF13479.1  AAA domain
     0.0042   16.5   0.0        2.9    7.2   0.0    2.6  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
     0.0062   15.7   0.7        1.7    7.7   0.0    3.4  2  PF12846.2  AAA-like domain
     0.0097   15.3   0.0       0.41   10.0   0.0    2.4  2  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.016   15.4   0.5        9.5    6.3   0.0    2.9  2  PF13476.1  AAA domain
      0.017   14.0   0.7        0.9    8.4   0.0    2.9  3  PF06745.8  KaiC
      0.023   13.4   0.0       0.28    9.8   0.0    2.4  2  PF00931.17 NB-ARC domain
      0.047   13.0   0.0        5.3    6.3   0.0    2.9  2  PF00158.21 Sigma-54 interaction domain
       0.06   11.8   0.0       0.28    9.6   0.0    1.9  2  PF02456.10 Adenovirus IVa2 protein
      0.093   11.8   0.6        2.7    7.0   0.0    2.6  2  PF02562.11 PhoH-like protein
       0.11   12.3   0.8       0.64    9.7   0.0    2.6  3  PF13189.1  Cytidylate kinase-like family
       0.11   11.2   0.0       0.21   10.2   0.0    1.4  1  PF01057.12 Parvovirus non-structural protein NS1
       0.18   10.8   0.0       0.98    8.4   0.0    2.0  2  PF03193.11 Protein of unknown function, DUF258


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0     4e-32   1.4e-29       2     129 ..     298     424 ..     297     426 .. 0.97
   2 !  151.6   0.0   3.2e-47   1.1e-44       1     131 [.     596     726 ..     596     727 .. 0.97

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 4e-32
                 EEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE CS
  PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkie 129
                 l++Gp G+GK+ l++a a e+gv++  + g+e+     ge+e+ +r+ f++a+++a p +++iD++d +ak+r+++++e+e+r+ +qLlt +dg++ +++ v+v++at +p++ldpa +r gR+dr+ie
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYESGVHVEILAGAEIAARKTGEAEEALRAAFQRAESHA-PAVIVIDDVDLIAKKRDKAANEQEKRLTSQLLTLMDGLRPSTG-VVVLTATAKPNELDPAARRfGRLDREIE 424
                 899*******************************999******************9.****************************************877.*************************997 PP

  == domain 2    score: 151.6 bits;  conditional E-value: 3.2e-47
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vl+yGppG+GKTl+akava+e+g++f++++g+ell +++gese+++r+lf++a++ a p++lf+DE+d++ak+r  s s s+ ++rv+nq+l+e+d v  k  +v+v+gatnrpd ldpa+ r gR+d+ ++i+
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGANFISVKGPELLTMWFGESEANVRNLFDKARAAA-PCVLFFDEMDSIAKARssSASGSDAGDRVMNQILAEIDAVGAK--NVFVVGATNRPDILDPAVTRpGRLDQLVHIP 726
                 79******************************************************9.****************9888899*****************995..7************************999987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.6e-05     0.017       7     114 ..     297     392 ..     293     407 .. 0.62
   2 ?   -0.7   0.1       3.6   1.3e+03      71      99 ..     471     501 ..     421     532 .. 0.66
   3 !   15.4   0.0   3.6e-05     0.013       7      44 ..     596     625 ..     592     705 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.6e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL.....s......eealeelrslldd.e 114
                 ++++G+sG+GK+ l+r  a +           + v+ve+ a++      +  +++ g+       +ee l+a  + +++++  +++iD+++ +     +      +++ ++l +l+d  +
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYE-----------SGVHVEILAGA------EIAARKTGE-------AEEALRAAFQRAESHAPAVIVIDDVDLIakkrdKaaneqeKRLTSQLLTLMDGlR 392
                 5899**********9999996...........56777777777......334444443.......2333444444444444448888888887665441444445555566666666563 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 3.6
   PF13401.1  71 tteellealqea.lrrrrtrlliiDEaqr.L 99 
                  te+ l+ + +  lr+++t lli+D+ +  L
  MMETSP0890-20130614|1701_1 471 CTEAALACVKDNlLRAADTALLILDDDEDaL 501
                 4444444444440455555999999877655 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 3.6e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfve 44 
                 ++++G++G+GKT+ ++ +a++          a++++v 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANEC--------GANFISVK 625
                 689*****************87........55555554 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0    0.0002     0.072       3     107 ..     298     436 ..     297     461 .. 0.58
   2 !   21.8   0.0   6.1e-07   0.00022       2      50 ..     596     645 ..     596     745 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.0002
                 --B--TT---HHHHHHHHHHSTEEE.EEGGG.B-......-GGGS-.B-----B--....SSGGGB-HHHHHHHH.........H..HHHHHH...............TTS.-----.------EEEEE----TTGGTTT CS
   PF13207.1   3 aitGppGsGKsTlakeLaerlglpv.lsldd.ll......reeglk.elddgeres....kdadadllaaildglaa.....kkdtlswvidg...............ale.seldl.rleeadeiiyldaplpecrkrl 107
                 +i+Gp+G+GKs l ++ a + g+ v +  ++ +        ee+l+  +++ e ++     + d dl+a+  d+ a+      + +l  ++dg                 e  + ++ r+ + d+ i l+ p++  r  +
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYESGVHVeILAGAeIAarktgeAEEALRaAFQRAESHApaviVIDDVDLIAKKRDKAANeqekrLTSQLLTLMDGlrpstgvvvltatakPNElDP-AArRFGRLDREIELVVPDEDQRLDI 436
                 699***************998877765666644345555555555544443332224333333344444333333335556644444467777666666666666554222122.3336666666666666664444444 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 6.1e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-.B-----B--S CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd.llreeglk.elddgeresk 50 
                 ++++GppG+GK+ +ak++a++ g + +s +    +   +  e ++++r+ +
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGANFISVKGpE-LLTMWFgESEANVRNLF 645
                 689**********************99999942.45555544445555433 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.5e-05      0.02       3     111 ..     298     435 ..     297     457 .. 0.74
   2 !   17.7   0.0   6.1e-06    0.0022       2      46 ..     596     642 ..     596     706 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.5e-05
   PF13671.1   3 llvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqskt............................dytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvrivylevpeetl 111
                 l+ G++G+GKs+l+++ + + g   ++l   ++  r  g+  + ++                               + +krl  +l+ l  + l+  + v+v    ++++e ++  + + rl+ ++++v+ + ++++ 
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYESGvhVEILAGAEIAARKTGEAEEALRaafqraeshapavividdvdliakkrdkAANEQEKRLTSQLLTLM-DGLRPSTGVVVLTATAKPNELDPAARRFGRLDREIELVVPDEDQRLD 435
                 578*************999998888888888888888886666555667777777778888888888877775434446666666664555.67888888888888889999999999999999888888887776665 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 6.1e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqskt 46 
                 vl+ G+pG+GK+  a+++++++g  ++ +  ++l + +fg+   + +
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGanFISVKGPELLTMWFGESEANVR 642
                 799********************777778888988888885444333 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00029       0.1      23      43 ..     297     317 ..     287     324 .. 0.87
   2 !    8.3   0.0    0.0043       1.5      93     201 ..     329     438 ..     320     457 .. 0.74
   3 ?    6.8   0.0     0.012       4.4      23      44 ..     596     617 ..     591     699 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00029
                 EEEE--TT---HHHHHHHHHH CS
  PF01637.13  23 iviyGprrsGKTaLlkeilee 43 
                  +i+Gp ++GK++L++ ++ e
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYE 317
                 58**************98765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0043
                 ----TS-GG.G--HHHHHHHHHH----EEEEEETGGGGG----......---HHHHHHHHHHHH...-TTEEEEE-------HHHTT-TTSTT------.EE-----HHHHHHHHH CS
  PF01637.13  93 eilkkksklvflaleellealkkkgkkiiiiiDElqklilgln......gakslvkeLlnlidsltkekhlcvvlclSseglfielvyskaplegRhky.ilvkdfdketalnflr 201
                 ei  +k+  +++al+ ++++ ++ +   +i+iD++  +  + +      ++k+l ++Ll l+d        + v++l+      e +++ a ++gR +  i++   d+++ l++l+
  MMETSP0890-20130614|1701_1 329 EIAARKTGEAEEALRAAFQRAESHAP-AVIVIDDVDLIA-KKRdkaaneQEKRLTSQLLTLMDG---LRPSTGVVVLTATAKPNE-LDPAARRFGRLDReIELVVPDEDQRLDILK 438
                 45556666778888888888777765.999******999.55568999899*************...455555555555444555.669999999998888887777777777766 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.012
                 EEEE--TT---HHHHHHHHHH- CS
  PF01637.13  23 iviyGprrsGKTaLlkeileel 44 
                 ++ yGp ++GKT + k +++e 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANEC 617
                 577*********9999998875 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.017       6.2      53      87 ..     297     331 ..     286     370 .. 0.82
   2 !   22.5   0.0   1.2e-07   4.3e-05      53      87 ..     596     630 ..     584     672 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.017
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvle 87 
                  l++Gp G Gk  l +  a e gv++++ +g  + 
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYESGVHVEILAGAEIA 331
                 699************************99998775 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.2e-07
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvle 87 
                 vl+yGpPG Gkt +ak +a+e g+++ +  gP l 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGANFISVKGPELL 630
                 9*******************************874 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   5.1    0.0013      0.46      24     104 ..     294     392 ..     284     535 .. 0.68
   2 !   16.5   0.0     2e-05    0.0073      22      50 ..     592     615 ..     579     631 .. 0.76
   3 ?   -0.8   0.0       4.4   1.6e+03     124     142 ..     648     663 ..     619     700 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0013
   PF13191.1  24 p.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.lpysaiiqalrellrqlltelaaelggwreallaalga.....................l 104
                 p   l+ GpsG+GKS L+r+     ++ +  ++ +    ++     ++++ +alr+++++  ++  a +  +   l a++ +                     +
  MMETSP0890-20130614|1701_1 294 PkGALIFGPSGCGKSQLIRA-----AAYESGVHVEILAGAEIAaRKTGEAEEALRAAFQRAESHAPAVIVIDDVDLIAKKRDkaaneqekrltsqlltlmdglR 392
                 34789***************.....5544444444444444335555666666888888888888888888888888777775554444444444444444432 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2e-05
   PF13191.1  22 gsplllvtGpsGiGKSsLlrelakpille 50 
                 +s  +l++Gp+G+GK+ ++++     +++
  MMETSP0890-20130614|1701_1 592 PSKGVLFYGPPGCGKTLIAKA-----VAN 615
                 3349*****************.....444 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 4.4
   PF13191.1 124 alartr.rpklvlvlDDlqw 142
                 a    r  +++vl++D+++ 
  MMETSP0890-20130614|1701_1 648 A----RaAAPCVLFFDEMDS 663
                 2....222249*****8443 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00064      0.23       5      74 ..     297     378 ..     294     425 .. 0.69
   2 !   13.7   0.0   0.00011     0.039       5      77 ..     596     668 ..     592     701 .. 0.73
   3 ?    0.0   0.0       1.8   6.5e+02      69      92 ..     814     837 ..     806     839 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00064
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev............p 74 
                  +i Gp ++GK+ l++  a+e     ++  ++  + + rk  + e  l  +f + ++    ++++D +  +            +
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYESG--VHVEILAGAEIAARKTGEAEeaLRAAFQRAESHAPAVIVIDDVDLIakkrdkaaneqeK 378
                 5899**************99998..6777777777666665544443445555544557889****999885555555555544 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 0.00011
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqevpewe 77 
                 ++ +Gp ++GKt ++k +a+e     +++ ++  +  +  + ++e  + +lf +       +lf+DE+  + +++
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECG--ANFISVKGPELLTMWFGESEanVRNLFDKARAAAPCVLFFDEMDSIAKAR 668
                 7889************9997777..6666665555444333333343455555544447788*****99987765 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 1.8
   PF13173.1  69 Eiqevpewedalkslvddgrnldv 92 
                 Eiq+++++ d lk   + + n+++
  MMETSP0890-20130614|1701_1 814 EIQRYKKFTDSLKTSAKADANMKF 837
                 9************99987777665 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00092      0.33       7     105 ..     298     390 ..     293     402 .. 0.85
   2 !   14.9   0.0   4.5e-05     0.016       6     100 ..     596     686 ..     592     692 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00092
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                 l+ gp+g+Gk+ l +a a    v    ++ ++   e++     +++ + ++  + + ++ae +   ++ +D++d i++k+ + a+  ++     LL +++g
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYESGV----HVEILAGAEIAA----RKTGEAEEALRAAFQRAESHApaVIVIDDVDLIAKKRDKAANEQEKRLTSQLLTLMDG 390
                 56799999999999999999997....888888888888....88888888888888888888889************98888888999999999999998 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 4.5e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----..------------HHHHH CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrdLL 100
                 +l+ gp g+Gkt++aka+a+   +    ++i +   ell+    e+e  v +l  ++ +    +   ++++DE+d i++   +s++    ++ V++ +L
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGA----NFISVKGPELLTmwFGESEANVRNLFDKARA----AAPCVLFFDEMDSIAKArsSSASGSDAGDRVMNQIL 686
                 799*******************96....9999999999996656666677777666544....4466************85433333333455666665 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00021     0.077      49     128 ..     296     373 ..     291     384 .. 0.80
   2 ?   -1.7   0.1         4   1.5e+03      97     116 ..     477     496 ..     467     514 .. 0.75
   3 !   11.9   0.0   0.00028       0.1      48      71 ..     594     617 ..     581     626 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00021
  PF01695.12  49 nlvllGpsGvGKthlAialgveavraglsvlfvrledLve.eLkrakgdgrleralkrlakvdllilDdlgllplseeeak 128
                   +++GpsG GK+ l  a   +a ++g++v  +  +++ + +   a++  r++ + ++     ++++Dd+ l++ ++++a+
  MMETSP0890-20130614|1701_1 296 GALIFGPSGCGKSQLIRA---AAYESGVHVEILAGAEIAArKTGEAEEALRAAFQRAESHAPAVIVIDDVDLIAKKRDKAA 373
                 5689***********776...677899999998888876515566666677777777778889*********999988775 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 4
  PF01695.12  97 grleralkrlakvdllilDd 116
                 + ++ +l r a + llilDd
  MMETSP0890-20130614|1701_1 477 ACVKDNLLRAADTALLILDD 496
                 55667788889999*****9 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00028
  PF01695.12  48 enlvllGpsGvGKthlAialgvea 71 
                 + +++ Gp+G GKt +A a++ e 
  MMETSP0890-20130614|1701_1 594 KGVLFYGPPGCGKTLIAKAVANEC 617
                 6799***************99775 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00062      0.22       4     111 ..     299     421 ..     297     454 .. 0.75
   2 !   11.9   0.0   0.00041      0.15       2      38 ..     596     637 ..     595     681 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00062
   PF13521.1   4 itGgpstGKTtlleaLa.argypvvpEvarevleeklakgeealpwe.e.............dllafaeavleaqleqeaaaaaskllfcDrglldtlaYarllggdaekeleeaar.ekrydl 111
                 i+G++++GK+ l++a a + g+ v   ++ e+  +k+++ eeal+++ +             d   +a+++ +a+ eqe++ +++ l ++D   + t +   + + + ++el+ aar   r d+
  MMETSP0890-20130614|1701_1 299 IFGPSGCGKSQLIRAAAyESGVHVEILAGAEIAARKTGEAEEALRAAfQraeshapavividDVDLIAKKRDKAANEQEKRLTSQLLTLMDGLRPSTGVVVLTATAK-PNELDPAARrFGRLDR 421
                 89*************99545888888888888888888888888876436777777777777888888888888888888888888888888777777776666666.6777654443555555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00041
   PF13521.1   2 ivitGgpstGKTtlleaLaar...gypvv..pEvarevleek 38 
                 + + G+p++GKT +++a+a++   ++  v  pE  ++++ e 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANEcgaNFISVkgPELLTMWFGES 637
                 6799***************87744333335777776666554 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.3e-06    0.0022      38     180 ..     298     442 ..     293     468 .. 0.77
   2 ?    4.9   0.0     0.045        16      37      62 ..     596     621 ..     592     634 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.3e-06
                 EEE-------HHHHHH---HHHHHSSSS-EEEEEHHHHHHHHHHHHH---HHHHHHHHT.T-SEEEEE-GGGG---.........---HHHHHHHHHHHHT---EEEEE-SS-TTT-SS--HHHHHHHH---EEE-----HHHHHHHHHHHHH CS
  PF00308.13  38 fiygevGlGKtHLLqaignevlenapnarvvYltaeeFlkelvdalrdkkiekfkkeyr.kvDllliDDiqflakk.........ektqeelfhifnalleenkqivlssDraPkeleeledrlrsrfeaGlvveiekpdletrlailekkle 180
                 +i+g +G GK  L++a+++e     + ++v  l + e + +     ++   ++f++    +  +++iDD+ ++akk         ++   +l+++++ l  +   +vl++  +P+el     r+  r++    +e+  pd + rl+il+ k +
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYE-----SGVHVEILAGAEIAARKTGEAEEALRAAFQRAEShAPAVIVIDDVDLIAKKrdkaaneqeKRLTSQLLTLMDGLRPSTGVVVLTATAKPNELDPAARRF-GRLDR--EIELVVPDEDQRLDILKVKTR 442
                 89*************98765.....68899999999999999999999888899876651667889*******9983322211111223457788888888999*************9877665.78887..56788899999****998765 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.045
                 EEEE-------HHHHHH---HHHHHS CS
  PF00308.13  37 lfiygevGlGKtHLLqaignevlena 62 
                 +++yg  G GKt + +a++ne  +n+
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGANF 621
                 799*****************988776 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0058       2.1       2      17 ..     298     313 ..     297     378 .. 0.82
   2 !   13.8   0.0   0.00012     0.044       1      26 [.     596     621 ..     596     666 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0058
  PF00910.17   2 wlyGpsgeGKStlake 17 
                 +++Gpsg+GKS+l++ 
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRA 313
                 689*********9987 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00012
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 +++yGp+g+GK+++ak +a++   ++
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGANF 621
                 689**************999877555 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0072       2.6       3      28 ..     298     323 ..     296     414 .. 0.87
   2 !   12.4   0.0   0.00024     0.085       1      32 [.     595     626 ..     595     667 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0072
                 EEE------HHHHHHHGGGGBS--EE CS
   PF07728.9   3 lLvGppGtgKselaerlaealnreve 28 
                 l+ Gp+G+gKs+l++  a   +  ve
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYESGVHVE 323
                 789***********988866555555 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00024
                 EEEEE------HHHHHHHGGGGBS--EEEEE- CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvql 32 
                 +vl  GppG+gK+ +a+ +a   ++++  v +
  MMETSP0890-20130614|1701_1 595 GVLFYGPPGCGKTLIAKAVANECGANFISVKG 626
                 5899**************99988777766655 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00023     0.082      52     117 ..     293     363 ..     240     404 .. 0.75
   2 !    9.6   0.0     0.001      0.36      17      80 ..     548     620 ..     532     660 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00023
   PF05673.8  52 pannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkdlpkivellr...erperfilfvDDLs 117
                 p + +L++G  G+GKS l++a+  e   +   L+  e++ ++  + ++ +++     e++   ++++DD+ 
  MMETSP0890-20130614|1701_1 293 PPKGALIFGPSGCGKSQLIRAAAYESGVHVeiLAGAEIAARKTGEAEEALRAAFqraESHAPAVIVIDDVD 363
                 56789****************98876544444999999988888777666554312244456788888864 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.001
   PF05673.8  17 epveevdkvelddLvgiekqkeallente...qflkgl......pannvLLwGarGtGKSslvkallneyaee 80 
                 e+v ev  v+++d+ g+e+ k++l e +e   qf++ +      p++ vL++G  G+GK  + ka+ ne+ ++
  MMETSP0890-20130614|1701_1 548 ESVVEVPDVSWNDVGGLEEVKRELRETVEypvQFASLYadfglpPSKGVLFYGPPGCGKTLIAKAVANECGAN 620
                 677888889999999999999999888764446665332223336899*******************998765 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0027      0.99       3      36 ..     299     335 ..     297     366 .. 0.55
   2 !   12.7   0.0   0.00017     0.061       5      67 ..     600     661 ..     596     667 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0027
  PF01443.13   3 vhGvpGcGKStlirkllrt......ltvnrptaelrtegk 36 
                 + G  GcGKS+lir ++ +      +      ae++ +  
  MMETSP0890-20130614|1701_1 299 IFGPSGCGKSQLIRAAAYEsgvhveI---LAGAEIAARKT 335
                 66888***********9996654222...22233333333 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00017
  PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                 G pGcGK+ + + ++++    + +++   el+t+++ +++++  + +d++  a+ +    +l++DE 
  MMETSP0890-20130614|1701_1 600 GPPGCGKTLIAKAVANEcganFISVKG-PELLTMWFGESEANVRNLFDKARAAAPC----VLFFDEM 661
                 78*************99***9555555.7*******99999989999999888876....7999996 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.29   1.1e+02       4      19 ..     298     313 ..     297     319 .. 0.85
   2 ?    5.2   0.0     0.036        13      76     134 ..     348     407 ..     330     428 .. 0.73
   3 ?    3.9   0.1     0.089        32      72     136 ..     479     538 ..     464     570 .. 0.59
   4 ?    6.6   0.0     0.013       4.7       3      23 ..     596     616 ..     594     621 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.29
   PF05729.7   4 ilqGeaGsGKTtLlqk 19 
                 ++ G++G+GK+ L++ 
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRA 313
                 578*********9875 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.036
   PF05729.7  76 llelperlLlilDglDelvsdlgq..lkekqpvrtlLselirkkllpeasllltvrpdalr 134
                 ++e    +++++D++D ++++ ++   ++++++   L +l+ + l p++ +++ + + + +
  MMETSP0890-20130614|1701_1 348 RAESHAPAVIVIDDVDLIAKKRDKaaNEQEKRLTSQLLTLMDG-LRPSTGVVVLTATAKPN 407
                 456667789**********988887777777888888899988.77777766655444443 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.089
   PF05729.7  72 vwivllelperlLlilDglDelvsdlgqlkekqpvrtlLselirkkllpeasllltvrpdalrd.l 136
                 v  +ll+ ++ +LlilD+ ++  + l++    ++++t  ++ +r++l  e s +ltv+ d   + l
  MMETSP0890-20130614|1701_1 479 VKDNLLRAADTALLILDDDED--ALLEE----ASIETAAASVLRRELQAEISDVLTVTADHFARaL 538
                 4569999**********8544..33333....5666666666666666666666666666654421 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.013
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 v+  G++G+GKT  ++ +a++
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANE 616
                 6789************99987 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.027       9.8       2      29 ..     298     324 ..     298     393 .. 0.79
   2 !   13.8   0.0   0.00014     0.049       1      29 [.     596     624 ..     596     672 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.027
   PF13238.1   2 litGtpGvGKtTlakeLaerlgdvlrdl 29 
                 li G++G+GK+ l ++ a + + v+ ++
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYE-SGVHVEI 324
                 699************99876.4444444 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00014
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdl 29 
                 +l+ G+pG+GKt +ak+ a+++g + +++
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANECGANFISV 624
                 6789*****************97776655 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.076        27      36      52 ..     297     313 ..     288     318 .. 0.81
   2 !    7.2   0.2    0.0071       2.6     126     184 ..     338     400 ..     312     403 .. 0.67
   3 !    8.7   0.0    0.0025      0.91      30      54 ..     590     614 ..     576     620 .. 0.86
   4 ?    2.5   0.1      0.21        75     128     182 ..     639     695 ..     623     706 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.076
   PF13481.1  36 tllaGapgtGKStlalq 52 
                 +l++G++g+GKS l+ +
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRA 313
                 79**********99755 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0071
   PF13481.1 126 ltadlerllaaieelegpdlvviDtlsrlvgg.densnsd...v.gaviaalerlakrtgaavl 184
                  +++l++  +++e+ + p+++viD ++ ++   d  +n++      +++  ++ l+ +tg+ vl
  MMETSP0890-20130614|1701_1 338 AEEALRAAFQRAES-HAPAVIVIDDVDLIAKKrDKAANEQekrLtSQLLTLMDGLRPSTGVVVL 400
                 35667778888888.77***********999964444444223136666666666667777666 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0025
   PF13481.1  30 lprgsltllaGapgtGKStlalqla 54 
                 lp+   +l++G+pg+GK+ +a + a
  MMETSP0890-20130614|1701_1 590 LPPSKGVLFYGPPGCGKTLIAKAVA 614
                 6788889************998766 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.21
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsd..v.gaviaalerlakrtgaa 182
                 a +++l + +++   p ++ +D +++++ + + s+s+  + ++v++++ +  ++ ga 
  MMETSP0890-20130614|1701_1 639 ANVRNLFDKARA-AAPCVLFFDEMDSIAKARSSSASGsdAgDRVMNQILAEIDAVGAK 695
                 567889999999.67*********9999995555544334688887776666666655 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.032        12      16      40 ..     294     318 ..     288     327 .. 0.83
   2 !   11.7   0.0   0.00025      0.09      19      53 ..     596     629 ..     592     652 .. 0.89
   3 ?   -2.6   0.1         6   2.2e+03     124     174 ..     779     827 ..     765     841 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.032
   PF06414.7  16 pkavllgGqpGAGKtslaellleel 40 
                 pk  l+ G+ G+GK++l++++  e 
  MMETSP0890-20130614|1701_1 294 PKGALIFGPSGCGKSQLIRAAAYES 318
                 7888999************998776 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00025
   PF06414.7  19 vllgGqpGAGKtslaellleelaagnivridaDel 53 
                 vl  G+pG+GKt +a+++ +e  + n++ +++ el
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANEC-GANFISVKGPEL 629
                 7778******************.******999887 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 6
   PF06414.7 124 evvivavpkelSelgilqRyeeelaekgegRrvpkevhdeayeglpesvea 174
                   ++v++p+ +S   + +R + e  + + +Rr  +++  ++y+++ +s+++
  MMETSP0890-20130614|1701_1 779 VKAAVEAPEGTSVD-MISRAHFEE-AMSRARRSVPDSEIQRYKKFTDSLKT 827
                 44556666666654.445555552.22334555555555666666666655 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.044        16      51     106 ..     295     349 ..     292     389 .. 0.73
   2 !   12.7   0.0   9.2e-05     0.033      51      98 ..     594     639 ..     592     649 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.044
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkkt.evltqalRks 106
                 ++ L+ Gp+g Gk+ l  a + e g  v+  +l+g+e+ +     + e+l  a++++
  MMETSP0890-20130614|1701_1 295 KGALIFGPSGCGKSQLIRAAAYESG--VHVEILAGAEIAARKTGEAeEALRAAFQRA 349
                 6789*************99999977..88889*****98766554314566666554 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 9.2e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 ++vL+ Gppg Gkt +a a+++e g    f++++g e+ ++    +e+
  MMETSP0890-20130614|1701_1 594 KGVLFYGPPGCGKTLIAKAVANECG--ANFISVKGPELLTMWFGESEA 639
                 89**********************9..679999999988776666665 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0034       1.2      49      73 ..     298     322 ..     294     370 .. 0.87
   2 !    8.2   0.0    0.0023      0.82      49      83 ..     597     631 ..     587     672 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0034
  PF03215.10  49 lltGPsGcgKsTtvkvlskelgikl 73 
                 l+ GPsGcgKs  ++  + e g+++
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYESGVHV 322
                 899************9999998876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0023
  PF03215.10  49 lltGPsGcgKsTtvkvlskelgikliewlnpvslk 83 
                 l  GP+GcgK+ + k ++ e g ++i    p++l 
  MMETSP0890-20130614|1701_1 597 LFYGPPGCGKTLIAKAVANECGANFISVKGPELLT 631
                 678**********************9998888764 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21        76      26      41 ..     298     313 ..     295     346 .. 0.90
   2 !   12.4   0.0   0.00016     0.058      25      42 ..     596     613 ..     592     616 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.21
  PF01078.16  26 llvGppGsGKtmlakr 41 
                 l++Gp+G+GK+ l+++
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRA 313
                 789********99876 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00016
  PF01078.16  25 lllvGppGsGKtmlakrl 42 
                 +l++GppG+GKt++ak++
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAV 613
                 89*************987 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.9   6.7e+02      29      45 ..     528     544 ..     507     549 .. 0.88
   2 !   14.8   0.0   4.9e-05     0.017      30      59 ..     794     823 ..     773     825 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.9
                 -B-HHHHHHHHHCS--S CS
   PF09336.5  29 pvtlkDflkalkttkpt 45 
                  vt  +f +alkt  p+
  MMETSP0890-20130614|1701_1 528 TVTADHFARALKTCNPS 544
                 5899*********9997 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.9e-05
                 B-HHHHHHHHHCS--SS-HHHHHHHHHHHH CS
   PF09336.5  30 vtlkDflkalkttkptVskeDlekheeFtk 59 
                 +++ +f++a+++++ +V ++ ++++++Ft+
  MMETSP0890-20130614|1701_1 794 ISRAHFEEAMSRARRSVPDSEIQRYKKFTD 823
                 8899*************************7 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.085        31      14      34 ..     298     317 ..     287     354 .. 0.67
   2 !   10.9   0.0   0.00073      0.26      16      33 ..     599     615 ..     590     627 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.085
   PF13245.1  14 vvtGgPGtGKTttlaaiiaal 34 
                 ++ G+ G GK+  l++++a+ 
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKS-QLIRAAAYE 317
                 558********.666666653 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00073
   PF13245.1  16 tGgPGtGKTttlaaiiaa 33 
                  G+PG GKT ++a+++a 
  MMETSP0890-20130614|1701_1 599 YGPPGCGKT-LIAKAVAN 615
                 6********.88887775 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.024       8.5       6      31 ..     297     324 ..     294     366 .. 0.81
   2 !    8.1   0.0    0.0044       1.6       6      22 ..     596     612 ..     593     620 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.024
   PF13479.1   6 vliYGkpGiGKTslaktl..pktlfldl 31 
                 +li+G++G GK+ l++ +  ++ + + +
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAayESGVHVEI 324
                 69************99886666665555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0044
   PF13479.1   6 vliYGkpGiGKTslakt 22 
                 vl YG+pG GKT  ak 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKA 612
                 789*********99986 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0     0.008       2.9      18      55 ..     297     334 ..     295     545 .. 0.76
   2 ?    6.6   0.0     0.012       4.3      19      89 ..     597     671 ..     590     692 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.008
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  18 tlipGafgcGktvisqslsknsnsdaiiyvgiGergne 55 
                 +li+G++gcGk+ ++   + +s  ++ i++g    +++
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYESGVHVEILAGAEIAARK 334
                 68**************9999999888888884433333 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.012
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  19 lipGafgcGktvisqslsknsnsdai.......iyvgiGergnevaevleefrkepimkrttlvantsnepvaareas 89 
                 l  G++gcGkt i++ ++++  ++ i         +  Ge + +v+++ ++     + +  +l++ +++  + ar  s
  MMETSP0890-20130614|1701_1 597 LFYGPPGCGKTLIAKAVANECGANFIsvkgpelLTMWFGESEANVRNLFDKA---RAAAPCVLFFDEMDSIAKARSSS 671
                 5679****************98888765665656666788777777666655...45577777777777777777665 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0047       1.7       4      23 ..     297     316 ..     295     331 .. 0.87
   2 ?    4.6   0.1     0.041        15       4      24 ..     596     616 ..     593     831 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0047
   PF12846.2   4 tlilGppGsGKSvllkklvl 23 
                 +li+Gp+G+GKS l+++ ++
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAY 316
                 68************998765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.041
   PF12846.2   4 tlilGppGsGKSvllkklvlq 24 
                 +l++GppG+GK+  +k+++ +
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANE 616
                 6899********999988655 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0011      0.41      22      42 ..     295     313 ..     287     316 .. 0.82
   2 ?    2.4   0.0      0.27        99      24      40 ..     594     610 ..     585     615 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0011
   PF13555.1  22 kgkntlltGasGsGKSTllDA 42 
                 kg   l+ G+sG GKS l+ A
  MMETSP0890-20130614|1701_1 295 KG--ALIFGPSGCGKSQLIRA 313
                 44..9***********99977 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.27
   PF13555.1  24 kntlltGasGsGKSTll 40 
                 k +l+ G+ G GK+ + 
  MMETSP0890-20130614|1701_1 594 KGVLFYGPPGCGKTLIA 610
                 359**********8665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.032        12      23      38 ..     298     313 ..     288     316 .. 0.91
   2 ?    6.3   0.0     0.026       9.5      22      39 ..     596     613 ..     580     615 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.032
   PF13476.1  23 lItGpNGsGKTTildA 38 
                 lI+Gp G+GK+ ++ A
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRA 313
                 8**********99988 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.026
   PF13476.1  22 tlItGpNGsGKTTildAi 39 
                 +l++Gp G+GKT i +A 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAV 613
                 59************9995 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   9.4e+02      22      35 ..     297     310 ..     290     321 .. 0.83
   2 ?    2.3   0.1      0.19        68      88     146 ..     327     384 ..     311     405 .. 0.68
   3 ?    8.4   0.0    0.0025       0.9      15      37 ..     589     611 ..     575     623 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.6
   PF06745.8  22 vlitGepGtGKtif 35 
                  li G +G+GK+ +
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQL 310
                 589********966 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.19
   PF06745.8  88 asesaeeeaeedleelieklaeaikeikakrvviDsitglyeekeavaReilrqlvrvl 146
                  +e a++++ e+ e+l + +++a ++     +viD ++ + +++++ a e+ ++l+++l
  MMETSP0890-20130614|1701_1 327 GAEIAARKTGEAEEALRAAFQRA-ESHAPAVIVIDDVDLIAKKRDKAANEQEKRLTSQL 384
                 44444444444445555555544.3344589*********9999998888887777665 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0025
   PF06745.8  15 GipegrvvlitGepGtGKtifal 37 
                 G+p  + vl +G pG+GKt++a+
  MMETSP0890-20130614|1701_1 589 GLPPSKGVLFYGPPGCGKTLIAK 611
                 99999***************997 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.69   2.5e+02      24      40 ..     299     315 ..     295     325 .. 0.83
   2 ?    9.8   0.0   0.00077      0.28      22      42 ..     596     616 ..     591     625 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.69
                 EE-------HHHHHHHT CS
  PF00931.17  24 lvGmgGvGKttlakqvy 40 
                 + G  G+GK+ l++++ 
  MMETSP0890-20130614|1701_1 299 IFGPSGCGKSQLIRAAA 315
                 89*********998875 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00077
                 EEEE-------HHHHHHHTS- CS
  PF00931.17  22 vglvGmgGvGKttlakqvykd 42 
                 v ++G +G+GKt +ak+v ++
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANE 616
                 779***************997 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.16        56      25      46 ..     297     318 ..     287     342 .. 0.79
   2 ?    6.3   0.0     0.015       5.3      24      46 ..     595     617 ..     577     630 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.16
                 EEEE-------HHHHHHHHHTS CS
  PF00158.21  25 vlitGesGtGKellAraiheas 46 
                  li G sG+GK+ l ra   +s
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYES 318
                 69**********9988776555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.015
                 -EEEE-------HHHHHHHHHTS CS
  PF00158.21  24 tvlitGesGtGKellAraiheas 46 
                  vl  G  G+GK+l+A+a+ ++ 
  MMETSP0890-20130614|1701_1 595 GVLFYGPPGCGKTLIAKAVANEC 617
                 699**************997754 PP

>> PF02456.10  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00077      0.28      87     106 ..     294     313 ..     287     318 .. 0.87
   2 ?   -1.4   0.0       1.8   6.4e+02      86     106 ..     591     612 ..     568     617 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00077
  PF02456.10  87 PvigvvygptgsGksqllrn 106
                 P  ++++gp+g+Gksql+r+
  MMETSP0890-20130614|1701_1 294 PKGALIFGPSGCGKSQLIRA 313
                 555789************96 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.8
  PF02456.10  86 qPvigvv.ygptgsGksqllrn 106
                  P  gv+ ygp g+Gk+ + ++
  MMETSP0890-20130614|1701_1 591 PPSKGVLfYGPPGCGKTLIAKA 612
                 566666559*******876654 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.28     1e+02      23      43 ..     298     318 ..     294     400 .. 0.80
   2 ?    7.0   0.0    0.0075       2.7      22      41 ..     596     615 ..     588     621 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.28
  PF02562.11  23 faiGpaGtGKTylavalavea 43 
                 +++Gp+G+GK+ l  a+a e 
  MMETSP0890-20130614|1701_1 298 LIFGPSGCGKSQLIRAAAYES 318
                 579********9998888765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0075
  PF02562.11  22 vfaiGpaGtGKTylavalav 41 
                 v+  Gp G+GKT++a a+a 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVAN 615
                 6789***********99985 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       7.8   2.8e+03     114     135 ..     201     222 ..     189     230 .. 0.81
   2 ?   -2.0   0.0         7   2.5e+03      11      56 ..     306     351 ..     299     388 .. 0.52
   3 ?    9.7   0.0    0.0018      0.64       8      59 ..     602     654 ..     598     701 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 7.8
   PF13189.1 114 nvlsvfiyadledRvervmere 135
                 +v  +fi+++++++v+ +++ +
  MMETSP0890-20130614|1701_1 201 KVNDIFITGTKKFKVKALENVR 222
                 67789**********9887764 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 7
   PF13189.1  11 gGreigekLaeklgipyydkeileeaakesgiseeevekydekass 56 
                 g++++ ++ a + g+++   +  e aa+++g  ee ++ + ++a+s
  MMETSP0890-20130614|1701_1 306 GKSQLIRAAAYESGVHVEILAGAEIAARKTGEAEEALRAAFQRAES 351
                 5555555555555554444444455555555555555544444443 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.0018
   PF13189.1   8 yGSgGreigekLaeklgipyydkeileeaakesgiseeevekydekass.esl 59 
                  G+g++ i++++a++ g ++++ +  e +   +g se+ v++  +ka     +
  MMETSP0890-20130614|1701_1 602 PGCGKTLIAKAVANECGANFISVKGPELLTMWFGESEANVRNLFDKARAaAPC 654
                 6**********************999999999999999996655555532333 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00059      0.21     117     137 ..     596     616 ..     590     621 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00059
  PF01057.12 117 vwfyGpantGktnlaeaIaka 137
                 v+fyGp+ +Gkt +a+a a+ 
  MMETSP0890-20130614|1701_1 596 VLFYGPPGCGKTLIAKAVANE 616
                 89***************9986 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0027      0.98      38      66 ..     297     325 ..     281     347 .. 0.77
   2 ?   -1.1   0.0       2.4   8.6e+02      37      58 ..     595     616 ..     589     627 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0027
                 EEEE-------HHHHHHH--------S-- CS
  PF03193.11  38 svlvGqSGvGKSsLinallpeldlkvgev 66 
                 +++ G+SG GKS Li a + e+ ++v+ +
  MMETSP0890-20130614|1701_1 297 ALIFGPSGCGKSQLIRAAAYESGVHVEIL 325
                 6799***********99887776666555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.4
                 BEEEE-------HHHHHHH--- CS
  PF03193.11  37 tsvlvGqSGvGKSsLinallpe 58 
                  +++ G+ G GK+ + +a+++e
  MMETSP0890-20130614|1701_1 595 GVLFYGPPGCGKTLIAKAVANE 616
                 57899*******9887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        39  (0.00285255); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 1.56u 0.35s 00:00:01.91 Elapsed: 00:00:01.23
# Mc/sec: 1693.04
//
Query:       MMETSP0890-20130614|1700_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-74  247.6   0.0    1.3e-73  247.0   0.0    1.2  1  PF01761.15 3-dehydroquinate synthase
    1.3e-10   40.9   0.0    3.1e-10   39.6   0.0    1.6  1  PF13685.1  Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.056   12.9   0.1       0.24   10.9   0.1    2.1  2  PF09186.6  Domain of unknown function (DUF1949)


Domain annotation for each model (and alignments):
>> PF01761.15  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0   0.0   2.8e-77   1.3e-73       2     257 ..     223     480 ..     222     483 .. 0.97

  Alignments for each domain:
  == domain 1    score: 247.0 bits;  conditional E-value: 2.8e-77
                 EEE----TTSSCCCHHHHHHHHHCSS--TT-EEEEE----TTT----HHHHTT---EEEE---SHHHHHCTT------BB-------B------SEEEEEGGGGCCS-HHHHH---HHHHHHHHTT-HHHHHHHHHCCHHCHH--THCCHHHHHHHHHHHHHHHHHHTTT----GGGGG-------CCCHHCTT.....TS----TTT---HHHHHHHHH-----HHHHHHHHHHHHH-----STT-H--HHHHHHHHTT- CS
  PF01761.15   2 lvvpdgEksKsletlekllealleaklerksliialGGGvvgDlaGfvAatylRGvrfiqvPTtllaqvDssvGgKtginlpegKNliGaFyqPkaVlidlevLktlpkrelraGlaEviKyaliadaelfelleeeaeallkekeeealeeliarsvevkaevveeDekekglralLnlGHtigHaiEallgy.....kllHGeaVaiGmvlaaelseklgllkeeeverllkllkklglptslkelldveellealkkD 257
                 +vvpdgE+ K+l+++++l +++l+ ++++ s++i+lGGG+v +l+Gf+A+t++RG+ +i+ PTtllaq D+s++ K+++n p+gKNl+G++y P  +++d++vL+tl++  l +G++E++K+al++da+l+++l e++ ++   ++ e l+++++r++e+k ev+  D+kek +  +L +GH +gHa+E++++       l+HG+aVa+G v+ a++s++lg+++++ ++r+++l++k++lpt+++ + +++++++alkk 
  MMETSP0890-20130614|1700_1 223 IVVPDGEDAKTLQVFAELADKVLSLGVDKYSVLISLGGGAVANLCGFIASTLHRGLGLIHFPTTLLAQCDASISHKQAVNAPHGKNLVGSYYAPIKIIVDVNVLATLEDWLLPDGFGEIVKHALCQDAKLLQWLDEHNGDI---TDLEFLDKVVRRTIELKCEVIDVDPKEKREAVVLIYGHELGHAVETISHRpgslcCLSHGQAVAVGCVVSARVSHALGCCDADVIQRTIDLCEKYHLPTQIPADQSIDSIMKALKKT 480
                 789***************************************************************************************************************************************999...4689*******************************************99877777899******************************************************99865 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   6.7e-14   3.1e-10      19     192 ..     190     378 ..     178     422 .. 0.72

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 6.7e-14
   PF13685.1  19 lkkvlvvadentykaagekveeslkeagveve..vleeleeeadleaveklvealre...kdadlvvavGsGtinDlaKyvsaklgk..pyisvpTa..aSmDGyaspgasltvdngkkktlspaklPiaiiaDldiikkAPkrliasGfGDllgkitala....dwklae..evae.eiaekaaelvqe 192
                  +  +v++de++++++ge+  + l + g++v+  v+ + e+ ++l+  ++l++++ +   +++ +++++G+G +  l+ +++++l++   +i +pT+  a  D+  s + ++   +gk+    +  +Pi ii+D++++++  + l+  GfG+++    ++     +w  ++  ++++ e+ +k+++ + e
  MMETSP0890-20130614|1700_1 190 SSPCYVFTDETVNSLYGERFLQGLLKLGYNVKkiVVPDGEDAKTLQVFAELADKVLSlgvDKYSVLISLGGGAVANLCGFIASTLHRglGLIHFPTTllAQCDASISHKQAVNAPHGKNLVG-SYYAPIKIIVDVNVLATLEDWLLPDGFGEIVKHALCQDakllQWLDEHngDITDlEFLDKVVRRTIE 378
                 46789**************************966666677778899999999998762225666******************987651168999**95457899999999999986666544.5678**************************9988876434435544444433322333333333333 PP

>> PF09186.6  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.2e-05      0.24      10      42 ..     351     384 ..     349     386 .. 0.88
   2 ?   -3.8   0.0         2   9.1e+03       3      14 ..     488     499 ..     488     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.2e-05
   PF09186.6  10 kverlLeqfgatildeeYtdd.Vtltiavpeeev 42 
                 k+  +L+++++ i d e+ d+ V+ ti+++ e +
  MMETSP0890-20130614|1700_1 351 KLLQWLDEHNGDITDLEFLDKvVRRTIELKCEVI 384
                 7889*****************9999999988876 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2
   PF09186.6   3 cdYadlgkverl 14 
                 c +a+l+kv rl
  MMETSP0890-20130614|1700_1 488 CQFALLEKVGRL 499
                 899999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.41s 00:00:01.40 Elapsed: 00:00:00.81
# Mc/sec: 1692.24
//
Query:       MMETSP0890-20130614|1706_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-63  212.9   0.4    3.3e-63  212.9   0.3    2.3  3  PF00956.13 Nucleosome assembly protein (NAP)
     0.0064   16.0   1.3     0.0064   16.0   0.9    4.0  4  PF04546.8  Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> PF00956.13  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4       0.2   1.4e+03     198     215 ..      54      73 ..      32      82 .. 0.50
   2 !  212.9   0.3   4.9e-67   3.3e-63       2     245 .]      84     353 ..      83     353 .. 0.89
   3 ?   -5.8   3.2         2   1.4e+04     210     218 ..     359     367 ..     354     387 .. 0.47

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.2
                 S..---S--TT--SSCCCHC CS
  PF00956.13 198 s..ppkvededdddeddeee 215
                 +  p+++e+ ddd+ dd+e+
  MMETSP0890-20130614|1706_1  54 NlaPQNTEEVDDDSSDDDEK 73 
                 32244444333333333332 PP

  == domain 2    score: 212.9 bits;  conditional E-value: 4.9e-67
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-...............-----------TTHHHHHHHHSHHHHTT--HHHHHHHTTEEE---B---------EEEEEE-T-SSBS-SEEEEEEEE-S--------E..EEE-----BS.CCC-TTEEEEEEEEE-TTT-...-EEEEEEEEE---GGGGGS---S-........-TT--SSCCCHCCHHHHHHHH---HHHHTTCCCHHHHH---- CS
  PF00956.13   2 rrvealkklqkelskleekfeeevlelerkyaklyqplyekrreiikgerepteiee...............eeeeeeeekgipdFWltvlknhellsemiterDeeiLkyLkdieveyledpkrsfkleFeFaeNeYFenevLtKtyklkkekdeeepeeieksegteIeWk.egknltkklvkkkqrnkktk...evrtvtkevpkesFFnfFsppkve........deddddeddeeeeeeleldyeigeaikedlipralkyytgea 245
                 +rv  lk l+++++++ ++++ e  ele++y ++  p++e r++++kge ep+ +ee               e+ee++   g+pdFWl +l  +e+ +++++e D ++LkyL d+++  ++d  ++f+leFeF +N+YF+n++LtKty++ +  d +++ e+ek++g++I+Wk ++ +l+ k v kkq+ ++ k    +r vtk +p++sFF+fF++ k +        d+dddd+d+e   +++++d e++ a+++ +ip+a+ ++tgea
  MMETSP0890-20130614|1706_1  84 QRVLGLKRLHEQYEDVLKQYAAERCELEKRYREKTGPILEARSKVVKGELEPEITEEdkktiaqakvadpvtETEEKNIIRGVPDFWLGALGRNEACEALLEEDDIDALKYLVDVRCIDFDD-MKGFTLEFEFVQNPYFTNSILTKTYHVPNLIDANGQPELEKISGCKIDWKnPNDCLVAKQVHKKQKARRGKnagMTRIVTKLEPRPSFFRFFDSIKLPtssskeddDDDDDDDDEEAIRDRIDTDVELAFALRNHVIPDAVLWFTGEA 353
                 7999********************************************999998554578999999*999854444444789****************************************.79***************************9998877799***********999**********9999888877789*****************776666666654344444444444449**************************96 PP

  == domain 3    score: -5.8 bits;  conditional E-value: 2
                 SCCCHCCHH CS
  PF00956.13 210 eddeeeeee 218
                 +d++++ee 
  MMETSP0890-20130614|1706_1 359 DDEDDDEEL 367
                 222222222 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.9   9.4e-07    0.0064      56     110 ..      59     112 ..      22     124 .. 0.73
   2 ?   -1.0   0.1      0.14   9.8e+02      23      50 ..     126     153 ..     123     163 .. 0.55
   3 !    3.4   3.5    0.0066        45      51      66 ..     307     322 ..     298     339 .. 0.55
   4 ?    0.2   6.1     0.062   4.2e+02      43      65 ..     355     387 ..     343     388 .] 0.55

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.4e-07
   PF04546.8  56 ddddededeeeeseeadegpdpeearerFaelrkqyeklekalekegrkskkaek 110
                 ++++ d+d++ +++e+d +p+  e+++r   l++++e++e++l+++ ++  + ek
  MMETSP0890-20130614|1706_1  59 NTEEVDDDSS-DDDEKDGEPLSREVLQRVLGLKRLHEQYEDVLKQYAAERCELEK 112
                 3333333333.4569****************************999988655554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.14
   PF04546.8  23 sdlisGfidpaaaaeeeeaeeeseddee 50 
                 s++++G ++p+ ++e++++ ++++ ++ 
  MMETSP0890-20130614|1706_1 126 SKVVKGELEPEITEEDKKTIAQAKVADP 153
                 6789999999544444443333333333 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0066
   PF04546.8  51 eeeddddddededeee 66 
                 ++edddddd+d+dee+
  MMETSP0890-20130614|1706_1 307 SKEDDDDDDDDDDEEA 322
                 2233344444444442 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.062
   PF04546.8  43 eeseddeeeeed...........dddddededee 65 
                 ++++dde+++ +           +dddd+d+d++
  MMETSP0890-20130614|1706_1 355 DDDDDDEDDD-EellrsinhgimEDDDDDDDDDD 387
                 2333333333.34778888888744444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.71
# Mc/sec: 1309.56
//
Query:       MMETSP0890-20130614|1707_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   33.2   1.9    4.3e-08   32.8   1.3    1.2  1  PF09446.5 VMA21-like domain
  ------ inclusion threshold ------
       0.33   11.0   2.4       0.45   10.6   1.1    1.6  1  PF05425.8 Copper resistance protein D


Domain annotation for each model (and alignments):
>> PF09446.5  VMA21-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   1.3   6.3e-12   4.3e-08       2      66 .]      21      80 ..      20      80 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 6.3e-12
   PF09446.5  2 asviekLllftalmivlPiatffalkfvvlksyahlsrlnatiisgilAvvavnlvlagYiyvAi 66
                +sv+ kL+    +  + Pi+tf  ++ +       + + n++ i++ +Av+++n  +a+Yi++A+
  MMETSP0890-20130614|1707_1 21 RSVVFKLMRHMFAVAIGPIGTFILVRDLQ-----SVHKKNRDAIAATAAVLVLNFLIALYIIMAF 80
                7999******************9999877.....55567*************************8 PP

>> PF05425.8  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   6.6e-05      0.45      42     100 ..      21      78 ..       7      81 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.6e-05
   PF05425.8  42 qlllaklalvvvmlalaainrfrllprleaaapedgrarrsrlrrsaaielvlglavla 100
                 + ++ kl   + ++a++ i+ f+l++ l+   +++  a + + + +++++++++l +++
  MMETSP0890-20130614|1707_1  21 RSVVFKLMRHMFAVAIGPIGTFILVRDLQSVHKKNRDAIA-ATAAVLVLNFLIALYIIM 78 
                 678999999*******************666655555555.666666777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 434.59
//
Query:       MMETSP0890-20130614|1705_1  [L=924]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-32  110.6   0.1    3.8e-19   69.0   0.0    3.6  2  PF00005.22 ABC transporter
    1.3e-15   58.0   4.8    0.00012   22.0   0.0    4.7  4  PF13304.1  AAA domain
    2.2e-10   40.0   0.4      0.007   15.4   0.0    4.5  3  PF02463.14 RecF/RecN/SMC N terminal domain
    2.9e-06   26.9  10.8    2.9e-06   26.9   7.5    5.3  2  PF12848.2  ABC transporter
    6.8e-06   25.4   0.4      0.012   15.0   0.0    2.6  2  PF13555.1  P-loop containing region of AAA domain
    7.3e-06   25.5   0.2      0.036   13.5   0.0    2.5  2  PF05729.7  NACHT domain
    1.4e-05   25.4   0.0      0.022   15.1   0.0    3.4  2  PF08477.8  Miro-like protein
    2.4e-05   24.2   0.2       0.13   12.0   0.0    3.5  2  PF13521.1  AAA domain
    3.6e-05   22.9   0.0      0.013   14.5   0.0    2.6  2  PF03193.11 Protein of unknown function, DUF258
    5.9e-05   23.3   7.1     0.0045   17.2   0.0    3.5  2  PF13191.1  AAA ATPase domain
    6.9e-05   22.4   0.2       0.15   11.6   0.0    3.0  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    0.00014   21.7   0.0      0.018   14.8   0.0    2.9  2  PF01926.18 50S ribosome-binding GTPase
    0.00022   20.5   0.7       0.48    9.6   0.0    3.4  4  PF13481.1  AAA domain
    0.00043   20.9   0.3      0.026   15.1   0.0    4.5  3  PF13207.1  AAA domain
    0.00051   19.4   1.4        1.3    8.3   0.0    3.2  2  PF01580.13 FtsK/SpoIIIE family
    0.00051   20.0   0.0        2.2    8.3   0.0    3.0  2  PF00910.17 RNA helicase
    0.00051   19.7   0.8       0.33   10.8   0.1    4.1  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    0.00065   19.4   0.0       0.19   11.5   0.0    3.1  2  PF13173.1  AAA domain
     0.0011   19.2   0.0      0.047   13.9   0.0    6.4  4  PF13476.1  AAA domain
     0.0018   17.6   0.0        1.8    7.8   0.0    3.0  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0026   17.7   5.8       0.47   10.4   0.0    3.8  3  PF13401.1  AAA domain
     0.0029   16.7   9.0      0.082   12.0   0.0    4.1  5  PF12846.2  AAA-like domain
     0.0044   16.4   0.0        0.5    9.7   0.0    2.4  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
     0.0045   16.5   0.1          1    8.9   0.0    2.6  2  PF03266.10 NTPase
      0.005   16.9   4.0        0.2   11.7   0.0    3.6  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0065   15.1   4.7        2.9    6.4   0.0    3.8  3  PF03308.11 ArgK protein
     0.0067   15.5   0.8       0.48    9.5   0.0    3.2  2  PF00025.16 ADP-ribosylation factor family
     0.0075   15.8   0.6       0.36   10.4   0.1    2.6  2  PF13245.1  Part of AAA domain
  ------ inclusion threshold ------
      0.014   15.1   0.2      0.048   13.5   0.1    1.9  1  PF14230.1  Domain of unknown function (DUF4333)
      0.027   14.0   0.1       0.14   11.8   0.0    2.2  2  PF08268.7  F-box associated domain
      0.037   13.6   0.0      0.037   13.6   0.0    4.0  4  PF01637.13 Archaeal ATPase
      0.037   13.7   9.5       0.23   11.2   0.0    4.0  3  PF13671.1  AAA domain
       0.55    9.9   0.0       0.55    9.9   0.0    4.8  4  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   2.1e-15   8.7e-13       1     118 []     393     536 ..     393     536 .. 0.76
   2 !   69.0   0.0   9.1e-22   3.8e-19       1     118 []     728     835 ..     728     835 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 2.1e-15
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH.EEEE-------...--BHHHHHH----S--...........................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr.igyipqdpllf..peltvrenldmakeekk...........................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +TLlk+++    +t  ++++   ++++  d++++++ + +  ++ ++   +    +++l+ a e+++                           ++++++++l  +g++++++ ++++ +SgG+++r++lAral+ +p+ll+LDEPtn
  MMETSP0890-20130614|1705_1 393 TTLLKMIASGALKTPPRVNCLYVEQEVAADDVKAVDaVLRADKERTALmqE----ENELAKALENDQlspeeqrekseriaavgeelkaigaaaAESKARRILFGLGFSAEMQMRPTKLFSGGWRMRISLARALFIEPTLLMLDEPTN 536
                 799999999999888888877656667777777777755555555555222....222222222222334444556788888999999999999****************99999********************************8 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 9.1e-22
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------...--BHHHHHH----S---HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekktdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 STLl lltg+l+ptegei+++ +            lrig+  q+  +    +  + + l+   + ++t + i+++l k+gl++++++ +++ LSgGqk rv+l  + l  p++llLDEPtn
  MMETSP0890-20130614|1705_1 728 STLLHLLTGKLNPTEGEIKRNpR------------LRIGVYNQHFVERlpMDENAVDYLRRLFD-DETYQSIRNMLGKYGLEGHAHTINMRDLSGGQKARVVLVELSLAAPHMLLLDEPTN 835
                 9********************33............55********9997544444555543333.3399**************99999********************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.3e-05     0.034       3      20 ..     383     400 ..     382     413 .. 0.90
   2 !    9.5   0.1    0.0019      0.79     246     302 ..     517     567 ..     504     568 .. 0.77
   3 !   10.7   0.2   0.00078      0.32       3      19 ..     718     734 ..     717     741 .. 0.90
   4 !   22.0   0.0   2.8e-07   0.00012     181     302 ..     745     866 ..     736     867 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.3e-05
   PF13304.1   3 viiGpNgsGKSnlLkald 20 
                 +i+GpNg GK++lLk ++
  MMETSP0890-20130614|1705_1 383 GIVGPNGRGKTTLLKMIA 400
                 69*************996 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0019
   PF13304.1 246 alltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 +l+ al+  +   ++l++DEp n+L+  ++  l + l+  +    +l++++H+  +l
  MMETSP0890-20130614|1705_1 517 SLARALFIEP---TLLMLDEPTNHLDLNAVIWLDDYLQGYKH---TLLIVSHDQDFL 567
                 5666666666...**************888777677766655...999999997666 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00078
   PF13304.1   3 viiGpNgsGKSnlLkal 19 
                 +++G Ng+GKS+lL  l
  MMETSP0890-20130614|1705_1 718 CVVGSNGAGKSTLLHLL 734
                 78************887 PP

  == domain 4    score: 22.0 bits;  conditional E-value: 2.8e-07
   PF13304.1 181 lkrlldllikgiddleielsdlkkvlklsllidedllek......dviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 +kr+ +l+i  ++  + e   ++++  ++l++ +d++ +        ++  +g+   ++++dlS G+k    l+ + l a+    +ll+DEp n+L+ + + +l + ++e     + +i++TH+  l+
  MMETSP0890-20130614|1705_1 745 IKRNPRLRIGVYNQHFVERLPMDENAVDYLRRLFDDETYqsirnmLGKYGLEGHAHTINMRDLSGGQKARVVLVELSLAAP---HMLLLDEPTNNLDIETIDALCDAINEYD---GGVICVTHDARLI 866
                 555666666666666666666666777777777777777888888999**********************88888888888...89***************99999997775...5********9988 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00025       0.1      28     205 ..     383     570 ..     366     583 .. 0.84
   2 !    6.7   0.0     0.008       3.3      27      42 ..     717     732 ..     705     746 .. 0.86
   3 !   15.4   0.0   1.7e-05     0.007     130     214 ..     800     878 ..     779     883 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00025
                 EE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT.......................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  28 aivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske.......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                  ivGpNG GK+ +l  i       ++ +l++    + ++ +++ a+ +   v+ +++ +++++ + +ee ++ + +++++ s  +  +k+ + + v e l+  g                           l+SgG +  ++la  +    +    l +lDe   +LD + v  + ++l+  +    ++++s+++++l+ +
  MMETSP0890-20130614|1705_1 383 GIVGPNGRGKTTLLKMI-------ASGALKTPPRVNCLYVEQEVAADDVKAVDAVLRADKERTALMQEENELAKALENDQLSPEEQREKSERIAAVGEELKAIGAAAAeskarrilfglgfsaemqmrptkLFSGGWRMRISLARAL----FIEPTLLMLDEPTNHLDLNAVIWLDDYLQGYK--HTLLIVSHDQDFLNSV 570
                 69*************99.......333788887777777767888888888999998888888999999999999999999999999999999999999999998888899*******************999***98766666554....44567999********************9888..6799999999998764 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.008
                 EEE--------HHHHH CS
                 xxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvld 42 
                  ++vG+NG+GKs +l 
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLH 732
                 689*********9875 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.7e-05
                 TT--TTG-----HHHHH.HHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE--EE. CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 130 agiskelLSgGektLva.laLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklvgvtkv 214
                 + i++  LSgG+k+ v  + L +A     p  + llDe   +LD + + ++++ ++e      +i+++++++++e  +  + v  +
  MMETSP0890-20130614|1705_1 800 HTINMRDLSGGQKARVVlVELSLA----AP-HMLLLDEPTNNLDIETIDALCDAINEYD--GGVICVTHDARLIEATNMRLWVVEN 878
                 5788899******84430344444....33.3789**********************99..99************99887777664 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.4       3.3   1.4e+03      48      70 ..      60      81 ..      37      95 .. 0.59
   2 !   26.9   7.5     7e-09   2.9e-06       4      65 ..     579     641 ..     576     659 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3.3
   PF12848.2 48 drfrakaskakqaqsrekalekm 70
                +++  ka ++kq ++ +k  e+ 
  MMETSP0890-20130614|1705_1 60 KKLS-KAEQRKQKKKGKKNVEEQ 81
                3333.244444444444444444 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 7e-09
   PF12848.2   4 engklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfr.akaskakqaqsrek 65 
                 +++kl  YkGnY+++    ++++ +q+kayekq+k+++ l++     + a +   kqaq+r+ 
  MMETSP0890-20130614|1705_1 579 DDKKLDAYKGNYDTFKTLEKQKRLAQLKAYEKQEKQLRALKSKATSKAkAEELVKKQAQQRRE 641
                 689*************************************97666544155555668888865 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0049         2      24      40 ..     380     396 ..     367     406 .. 0.82
   2 !   15.0   0.0   2.8e-05     0.012      14      40 ..     706     731 ..     702     746 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0049
   PF13555.1  24 kntlltGasGsGKSTll 40 
                 + + ++G++G GK+Tll
  MMETSP0890-20130614|1705_1 380 RRYGIVGPNGRGKTTLL 396
                 56779***********8 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.8e-05
   PF13555.1  14 ghtveidpkgkntlltGasGsGKSTll 40 
                 +  + +d++   + ++G +G+GKSTll
  MMETSP0890-20130614|1705_1 706 DMNFGMDQDT-RVCVVGSNGAGKSTLL 731
                 5556677664.899************8 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.6e-05     0.036       5      26 ..     384     405 ..     380     415 .. 0.85
   2 !    9.5   0.1    0.0015      0.61       2      22 ..     716     736 ..     715     746 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.6e-05
   PF05729.7   5 lqGeaGsGKTtLlqklasawak 26 
                 ++G++G GKTtLl+++as + k
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALK 405
                 89***************98655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0015
   PF05729.7   2 tvilqGeaGsGKTtLlqklas 22 
                  v+++G +G GK+tLl+ l  
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLTG 736
                 599*************98765 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.025        10       3      25 ..     383     405 ..     381     459 .. 0.71
   2 !   15.1   0.0   5.3e-05     0.022       1      26 [.     716     745 ..     716     793 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.025
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp 25 
                  +vG  g GK++ll+ ++++  +
  MMETSP0890-20130614|1705_1 383 GIVGPNGRGKTTLLKMIASGALK 405
                 79*************99987666 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 5.3e-05
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp....k 26 
                 +v vvG+ g+GKs+ll+ l+g+ +p    +
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLTGKLNPtegeI 745
                 899****************99999844440 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00033      0.13       4      65 ..     384     448 ..     381     468 .. 0.67
   2 !    8.2   0.0    0.0048         2       1      20 [.     716     735 ..     716     751 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00033
   PF13521.1   4 itGgpstGKTtlleaLaargypvvpEvarevleekl.akgeealpwe..edllafaeavleaqle 65 
                 i+G+ + GKTtll+ +a+   ++ p+v   ++e+++ a++ +a +++  +d+ + a++++e++l+
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKTPPRVNCLYVEQEVaADDVKAVDAVlrADKERTALMQEENELA 448
                 89***************999999999999999999944444444444433444444433333332 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0048
   PF13521.1   1 kivitGgpstGKTtlleaLa 20 
                 +++++G  ++GK+tll  L+
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLT 735
                 79**************9987 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.019       7.8      38      59 ..     382     403 ..     351     448 .. 0.82
   2 !   14.5   0.0   3.3e-05     0.013      35      68 ..     713     747 ..     698     769 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.019
                 EEEE-------HHHHHHH---- CS
  PF03193.11  38 svlvGqSGvGKSsLinallpel 59 
                   +vG+ G GK++L++++++ +
  MMETSP0890-20130614|1705_1 382 YGIVGPNGRGKTTLLKMIASGA 403
                 569*************999865 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.3e-05
                 T.SBEEEE-------HHHHHHH--------S---- CS
  PF03193.11  35 d.ktsvlvGqSGvGKSsLinallpeldlkvgevse 68 
                 +   +++vG+ G+GKS+L+  l+++l+   ge+++
  MMETSP0890-20130614|1705_1 713 QdTRVCVVGSNGAGKSTLLHLLTGKLNPTEGEIKR 747
                 4256789*******************999999986 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-05    0.0045      28     144 ..     384     547 ..     376     569 .. 0.66
   2 !    8.6   0.0     0.005       2.1      25      42 ..     716     733 ..     709     799 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-05
   PF13191.1  28 vtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa.lrellrqlltelaaelggwreallaalga......lipelegiiglqalvalldaalartr......................................rpklvlvlDD.........lqwad 144
                 ++Gp G GK++Ll+      +++++++++ ++++l+ +++ +a +++ ++++lr    e++a  ++ +e ++a++++      +   +e+i    + ++++ aa+a+ +                                      +p ++l+lD+         + w+d
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKM-----IASGALKTPPRVNCLYVEQEVAADDVKaVDAVLR-ADKERTALMQEENELAKALENDqlspeeQREKSERIAAVGEELKAIGAAAAESKarrilfglgfsaemqmrptklfsggwrmrislaralfiEP-TLLMLDEptnhldlnaVIWLD 547
                 89*************.....******************7777777664444444.4444444444444444444444544444333333333333444444444444447788888888888888888888888888888887777543.777777665454455544544 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.005
   PF13191.1  25 lllvtGpsGiGKSsLlre 42 
                  ++v+G  G GKS+Ll+ 
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHL 733
                 599*************87 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00037      0.15       3      31 ..     382     410 ..     380     451 .. 0.86
   2 !    7.6   0.1    0.0061       2.5       2      21 ..     716     735 ..     715     741 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00037
                 EEEE-------HHHHHHHHHHHHH----- CS
   PF03205.9   3 vavvGpkdsGKTtlieklvnklkergyrv 31 
                   +vGp + GKTtl+++++  +++   rv
  MMETSP0890-20130614|1705_1 382 YGIVGPNGRGKTTLLKMIASGALKTPPRV 410
                 679***************99888766555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0061
                 EEEEE-------HHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklv 21 
                 +v vvG  + GK+tl+  l 
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLT 735
                 799************98775 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.12        50       2      21 ..     382     401 ..     381     445 .. 0.88
   2 !   14.8   0.0   4.4e-05     0.018       1      85 [.     716     859 ..     716     894 .. 0.54

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.12
                 EEEE--TT---HHHHHHHHC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg 21 
                  +ivG    GK+tL++ +  
  MMETSP0890-20130614|1705_1 382 YGIVGPNGRGKTTLLKMIAS 401
                 58*************99874 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.4e-05
                 EEEEE--TT---HHHHHHHHC.........ST....CTEETS-TT-SSSE.SEEEE......................ETTE......EEEEE---...................SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEE CS
  PF01926.18   1 evaivGrpNvGKStLinaLtg.........ek....aakvsdypgtTrdi.tenev......................kkek......iilvDtPG...................iiegasedkeiegikkylekveradvlllvv 85 
                 +v++vG   +GKStL+  Ltg         ++    +  v++++++ r +  en+v                                i++ D+ G                   ++++  ++  ie i+  +++++++d+ +++v
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLTGklnptegeiKRnprlRIGVYNQHFVERLPmDENAVdylrrlfddetyqsirnmlgkyG--LeghahtINMRDLSGgqkarvvlvelslaaphmlLLDEPTNNLDIETIDALCDAINEYDGGVICV 859
                 69******************62222222221123334447777777777733344355555555444444333333220..03333334566666655555555555555555442222223333556666666666666644444 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.7   1.9e+03     148     174 ..      34      64 ..      20      69 .. 0.69
   2 !    9.6   0.0    0.0012      0.48      32     123 ..     378     454 ..     365     478 .. 0.66
   3 !    6.9   0.0    0.0077       3.2      30      52 ..     711     733 ..     691     750 .. 0.83
   4 ?   -2.5   0.0       6.1   2.5e+03     127     185 ..     836     858 ..     781     861 .. 0.58

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 4.7
   PF13481.1 148 iDtlsrlvgg..densnsd..vgaviaaler 174
                 iD++++++++  +e+++++  ++ v+++l +
  MMETSP0890-20130614|1705_1  34 IDPITAALANqeQEEDEDEtpAQPVVKKLSK 64 
                 8999888877653333333234888888765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0012
   PF13481.1  32 rgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagvgslrltaddrrd 123
                  g  + ++G+ g GK+tl+  +a  +++ +       p + ++ly+  E ++++++  + a+l+a  d+e+  l++    +++ l++  ++d
  MMETSP0890-20130614|1705_1 378 HGRRYGIVGPNGRGKTTLLKMIASGALK-T-------PPRVNCLYVEQEVAADDVKA-VDAVLRA--DKERTALMQ----EENELAKALEND 454
                 5667789************988888885.2.......45899****99988877653.2222222..233444433....344444444444 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0077
   PF13481.1  30 lprgsltllaGapgtGKStlalq 52 
                 +++++ ++++G+ g+GKStl+  
  MMETSP0890-20130614|1705_1 711 MDQDTRVCVVGSNGAGKSTLLHL 733
                 5678899*************965 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 6.1
   PF13481.1 127 tadlerllaaieelegpdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavll 185
                 + d+e+++a++                                    +  ++++  v++
  MMETSP0890-20130614|1705_1 836 NLDIETIDALC------------------------------------DAINEYDGGVIC 858
                 33333333333....................................333444444444 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       7.1   2.9e+03      51      69 ..      81      99 ..      16     153 .. 0.55
   2 !   15.1   0.0   6.4e-05     0.026       1      64 [.     381     454 ..     381     490 .. 0.65
   3 !   12.9   0.1   0.00031      0.13       1      25 [.     716     748 ..     716     841 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 7.1
                SGGGB-HHHHHHHH....H CS
   PF13207.1 51 dadadllaaildglaakkd 69
                ++d+d ++ i+ + a++++
  MMETSP0890-20130614|1705_1 81 QEDDDDIDPIATASANQEQ 99
                2222222222222222222 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 6.4e-05
                 EE--B--TT---HHHHHHHHH.HS......TEEE....EEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH CS
   PF13207.1   1 viaitGppGsGKsTlakeLae.rl......glpv....lslddllreeglkelddgereskdadadllaaildgl 64 
                 +++i+Gp G GK+Tl k +a  +l      ++ +    +  dd +++ +   + d er++    +++la+ l+++
  MMETSP0890-20130614|1705_1 381 RYGIVGPNGRGKTTLLKMIASgALktpprvNCLYveqeVAADD-VKAVDAVLRADKERTALMQEENELAKALEND 454
                 579******************7776666555666233333333.2444444444555555555555555555555 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00031
                 EE--B--TT---HHHHHHHHHHST........E CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerlg........l 25 
                 +++++G  G+GKsTl  +L  +l+         
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLTGKLNptegeikrN 748
                 79****************998886444444442 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.6    0.0046       1.9      43      74 ..     384     413 ..     344     506 .. 0.84
   2 !    8.3   0.0    0.0031       1.3      33      57 ..     709     733 ..     698     738 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0046
  PF01580.13  43 iaGatgsGKStflrtLilslaathtPeevqly 74 
                 i+G +g+GK+t l+ +i+s a+ +tP +v+ +
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLK-MIASGAL-KTPPRVNCL 413
                 99********9876.8888888.589999755 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0031
  PF01580.13  33 adlvkaphlLiaGatgsGKStflrt 57 
                 + +++ +++ ++G++g+GKSt l+ 
  MMETSP0890-20130614|1705_1 709 FGMDQDTRVCVVGSNGAGKSTLLHL 733
                 66788899*************9985 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0054       2.2       3      30 ..     384     409 ..     383     467 .. 0.72
   2 !    8.3   0.0    0.0056       2.3       1      26 [.     717     742 ..     717     761 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0054
  PF00910.17   3 lyGpsgeGKStlakeLakallkklklkk 30 
                 ++Gp+g GK+tl k +a+  lk+   ++
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKTP--PR 409
                 68*************999888655..33 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0056
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 ++++G++g GKStl + L+ +l  + 
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKLNPTE 742
                 689**************998887444 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.17        69      63      78 ..     525     540 ..     501     544 .. 0.85
   2 !   10.8   0.1   0.00079      0.33      62      89 ..     823     850 ..     794     851 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.17
   PF13558.1  63 sirlvfLDEAFsklDe 78 
                 ++ l++LDE+++ lD 
  MMETSP0890-20130614|1705_1 525 EPTLLMLDEPTNHLDL 540
                 5899**********95 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00079
   PF13558.1  62 psirlvfLDEAFsklDeeniasllellr 89 
                  ++ +++LDE++++lD e+i++l ++++
  MMETSP0890-20130614|1705_1 823 AAPHMLLLDEPTNNLDIETIDALCDAIN 850
                 36899*****************999876 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00045      0.19       5      46 ..     382     426 ..     378     490 .. 0.77
   2 ?    4.7   0.0     0.058        24       5      27 ..     717     739 ..     713     842 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00045
   PF13173.1   5 lvitGpRrvGKttllkqlakell...keesilyinlddeelrkla 46 
                 + i Gp + GKttllk +a+  l   ++ ++ly++ + ++++ +a
  MMETSP0890-20130614|1705_1 382 YGIVGPNGRGKTTLLKMIASGALktpPRVNCLYVEQEVAADDVKA 426
                 679****************99998888888888887776665444 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.058
   PF13173.1   5 lvitGpRrvGKttllkqlakell 27 
                 +++ G  ++GK+tll  l  +l 
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKLN 739
                 7899**********988776665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00011     0.047      24      41 ..     384     401 ..     382     424 .. 0.87
   2 ?   -1.8   1.8       7.2     3e+03     164     195 ..     441     476 ..     409     481 .. 0.59
   3 ?    4.6   2.7     0.079        33     134     177 ..     582     635 ..     535     661 .. 0.48
   4 !   12.3   0.0   0.00034      0.14      22      81 ..     717     780 ..     705     823 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00011
   PF13476.1  24 ItGpNGsGKTTildAicl 41 
                 I+GpNG GKTT+l+ i  
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIAS 401
                 9*************9975 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 7.2
   PF13476.1 164 leeledekellekl....lqeeekekeleeleeele 195
                  +e+++  + le+     ++++ek++++ ++ eel+
  MMETSP0890-20130614|1705_1 441 MQEENELAKALENDqlspEEQREKSERIAAVGEELK 476
                 333444444444423344566666666666666665 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.079
   PF13476.1 134 pliaylgqerekekfkl.............kekkkrleelekeleeledekellekl 177
                 +l ay+g+ +    fk+             ++++k+l++l+ +   + + +el +k+
  MMETSP0890-20130614|1705_1 582 KLDAYKGNYD---TFKTlekqkrlaqlkayEKQEKQLRALKSKATSKAKAEELVKKQ 635
                 2333333333...12230000001111112333333344433333333333333333 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 0.00034
   PF13476.1  22 tlItGpNGsGKTTildAiclaLygktsrlkks...rgrgilkddveiek...egkkkayvelsfed 81 
                 ++++G NG+GK+T+l  ++  L    +++k++   r   ++++ ve  +   +++  +y ++ f+d
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKLNPTEGEIKRNprlRIGVYNQHFVE--RlpmDENAVDYLRRLFDD 780
                 5799***********9888777554444444422122222222222..123355556666666655 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0044       1.8       3      38 ..     382     418 ..     380     474 .. 0.77
   2 ?    6.5   0.0     0.011       4.5       3      21 ..     717     735 ..     715     768 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0044
                 EEEE-------HHHHHHHHC.HS---S-EEEEES--- CS
  PF02492.14   3 tvltGflGsGKTtLleklle.knreglkiaVivndfg 38 
                 + ++G+ G GKTtLl+ + + + +   ++  +  +++
  MMETSP0890-20130614|1705_1 382 YGIVGPNGRGKTTLLKMIASgALKTPPRVNCLYVEQE 418
                 5799************999764445555555555555 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.011
                 EEEE-------HHHHHHHH CS
  PF02492.14   3 tvltGflGsGKTtLlekll 21 
                 + ++G+ G+GK+tLl  l+
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLT 735
                 6799***********8766 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0011      0.47       9      37 ..     384     423 ..     379     477 .. 0.69
   2 ?   -2.3   0.5       9.7     4e+03      23      71 ..     600     656 ..     592     667 .. 0.63
   3 !    7.9   0.2    0.0067       2.8       7      30 ..     717     740 ..     711     867 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0011
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae...........k 37 
                 ++G+ G GKTtll+++a+ + + +   +           +
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKTPPRVNclyveqevaadD 423
                 79***************98865444333444444443333 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 9.7
   PF13401.1  23 rlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg........rlt 71 
                 + + ql+ +++++++ r+++  a++++++ el +k +++  +p  +         ++
  MMETSP0890-20130614|1705_1 600 KRLAQLKAYEKQEKQLRALKSKATSKAKAEELVKKQAQQRREPGARskkqaiasGQD 656
                 445555555555558888888888888888888888888887777755555554444 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0067
   PF13401.1   7 lvvtGesGvGKTtllrrlarqlde 30 
                 ++v+G  G+GK+tll  l  +l+ 
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKLNP 740
                 789************999888743 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.3        10   4.1e+03     100     172 ..      22      91 ..       5     106 .. 0.52
   2 ?   -2.7   0.4       5.9   2.5e+03     114     163 ..     201     249 ..     139     290 .. 0.55
   3 ?   -1.3   0.0       2.2     9e+02     270     304 ..     323     373 ..     317     376 .. 0.78
   4 !   12.0   0.0    0.0002     0.082       6      32 ..     384     410 ..     382     476 .. 0.93
   5 !    7.9   0.0    0.0036       1.5       5      34 ..     718     753 ..     716     753 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 10
   PF12846.2 100 selrnrpledeeeaalsralrelyeeegiatlaqrqayPtlgdllealreeeeelaeealarde....rreaaeela 172
                 + +++++ +d++ + + +al +  +ee+++   ++ a P++++l +a    e++ ++++ ++      ++++++++a
  MMETSP0890-20130614|1705_1  22 AIQQQEDSDDDDIDPITAALANQEQEEDED---ETPAQPVVKKLSKA----EQRKQKKKGKKNVeeqeDDDDIDPIA 91 
                 445566666666666666666555555555...33333334443333....32222222222112233455555555 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 5.9
   PF12846.2 114 a.lsralrelyeeegiatlaqrqayPtlgdllealreeeeelaeealarde 163
                 a  ++ l ++ ++ ++a + +r + + +++ ++ ++ e +e +++a +++ 
  MMETSP0890-20130614|1705_1 201 AkYEKKLAKALKKGDEA-DVSRYRAK-VEKYQAKIDAENKESKAKAARQAQ 249
                 12333333444444443.22233333.555555555555555555555555 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.2
   PF12846.2 270 aregRkfgvgiilatQslsdlpps................ekakgilnnst 304
                  re+R+  ++ + ++Qs  d  +                 +++k++++ns+
  MMETSP0890-20130614|1705_1 323 DREQRSLEGAQFACSQSAVDENDPnwqnaldikidsfsisAAGKTLFENSP 373
                 59**************99776655577777777777777777777777775 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 0.0002
   PF12846.2   6 ilGppGsGKSvllkklvlqllargprv 32 
                 i+Gp G GK++llk++++++l+  prv
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKTPPRV 410
                 89******************9988776 PP

  == domain 5    score: 7.9 bits;  conditional E-value: 0.0036
   PF12846.2   5 lilGppGsGKSvllkkl......vlqllargprvvi 34 
                 +++G  G+GKS+ll  l      +++ ++r+pr++i
  MMETSP0890-20130614|1705_1 718 CVVGSNGAGKSTLLHLLtgklnpTEGEIKRNPRLRI 753
                 79***************9888888888889998886 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0012       0.5      12      39 ..     376     403 ..     371     489 .. 0.88
   2 ?    4.1   0.0     0.061        25       7      36 ..     706     735 ..     703     744 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0012
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  12 ivqGqttlipGafgcGktvisqslskns 39 
                 i+ G + +i+G+ g Gkt+++++++  +
  MMETSP0890-20130614|1705_1 376 IGHGRRYGIVGPNGRGKTTLLKMIASGA 403
                 799********************99765 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.061
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20   7 DslfPivqGqttlipGafgcGktvisqsls 36 
                 D+ f + q  +++++G  g+Gk+++++ l+
  MMETSP0890-20130614|1705_1 706 DMNFGMDQDTRVCVVGSNGAGKSTLLHLLT 735
                 7777888889***************98765 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0024         1       3      64 ..     383     444 ..     381     485 .. 0.73
   2 ?    4.9   0.1     0.042        17       1      24 [.     716     739 ..     716     746 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0024
                 EEE-------HHHHHHHHHH-...---EE--EEE-----------EEE--.---EEE---TT CS
  PF03266.10   3 fiTGepgvGKtTlvkkvlellksegvkvgGfyteevreggrrigfdivdlasgergilarvk 64 
                  i G+ g GKtTl+k +++   +   +v+ +y+e+        + d v  a++er+ l +++
  MMETSP0890-20130614|1705_1 383 GIVGPNGRGKTTLLKMIASGALKTPPRVNCLYVEQEVAADDVKAVDAVLRADKERTALMQEE 444
                 789**************998888889999999875444444444444444467777666666 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.042
                 EEEEE-------HHHHHHHHHH-. CS
  PF03266.10   1 rvfiTGepgvGKtTlvkkvlellk 24 
                 rv + G+ g GK+Tl++ ++ +l+
  MMETSP0890-20130614|1705_1 716 RVCVVGSNGAGKSTLLHLLTGKLN 739
                 57899************9998886 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00048       0.2       3      54 ..     384     435 ..     382     483 .. 0.77
   2 ?    4.8   0.1     0.065        27       1      24 [.     717     740 ..     717     878 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00048
                 EE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHH CS
  PF00004.24   3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeak 54 
                 ++Gp G GKT+l k +a+ +  +  ++++  + +++  +  k + +++++ k
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKTPPRVNCLYVEQEVAADDVKAVDAVLRADK 435
                 68****************9877778888888887777777777777775533 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.065
                 EEEE-------HHHHHHHHHHCTH CS
  PF00004.24   1 vllyGppGtGKTllakavakelgv 24 
                 v+++G  G GK++l + +  +l+ 
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKLNP 740
                 689*************99999863 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.8       0.4   1.7e+02     180     241 ..      63     125 ..      50     155 .. 0.70
   2 !    6.3   0.0    0.0078       3.2      17      65 ..     367     415 ..     359     422 .. 0.82
   3 !    6.4   0.0    0.0071       2.9      29      53 ..     714     738 ..     702     745 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHS--SBTTB--EEEE-BTTTTB--HHHHHH.HHHHHHHHHH---HHHH CS
  PF03308.11 180 eeaekaarelraaleleeekekeWrppvlktsavegeGidelvda.ieehrevlektGlleek 241
                 ++ae+ +++ +   ++ee+++++   p+ ++sa++++G d l da + e +ev e+    ++ 
  MMETSP0890-20130614|1705_1  63 SKAEQRKQKKKGKKNVEEQEDDDDIDPIATASANQEQGEDTLHDAtVIEDTEVKEEISSEQNV 125
                 455556666666677778888888999***************997345555554444333333 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0078
                 HHHHHHGGG----EEE--B-------HHHHHH---HHHH----EEEEEE CS
  PF03308.11  17 ellrkilpkaGralvvGltGvPGaGkstlveklikelrrrGkrvavlav 65 
                 +l+++     G+ ++ G+ G  G Gk tl++ ++  + +   rv  l v
  MMETSP0890-20130614|1705_1 367 TLFENSPLMIGHGRRYGIVGPNGRGKTTLLKMIASGALKTPPRVNCLYV 415
                 55555556679999*****************999999888888877765 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0071
                 -EEE--B-------HHHHHH---HH CS
  PF03308.11  29 alvvGltGvPGaGkstlveklikel 53 
                  ++v + G+ GaGkstl++ l+ +l
  MMETSP0890-20130614|1705_1 714 DTRVCVVGSNGAGKSTLLHLLTGKL 738
                 57899*************9998776 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.14        59      19      41 ..     384     406 ..     376     425 .. 0.85
   2 !    9.5   0.0    0.0012      0.48       8      36 ..     708     736 ..     702     745 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.14
                 EE--TT---HHHHHHHHHS-EEE CS
  PF00025.16  19 llGLDnaGKtTilkklkleelvt 41 
                 ++G  + GKtT+lk++ ++ l+t
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKT 406
                 7888999********99988765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0012
                 C--.TSEEEEEEE--TT---HHHHHHHHH CS
  PF00025.16   8 lklkkkelrilllGLDnaGKtTilkklkl 36 
                  +++++++r+ ++G  +aGK+T+l+ l+ 
  MMETSP0890-20130614|1705_1 708 NFGMDQDTRVCVVGSNGAGKSTLLHLLTG 736
                 467799******************98865 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00088      0.36      15      55 ..     384     421 ..     374     440 .. 0.76
   2 ?    2.7   0.0      0.22        93      11      30 ..     716     733 ..     711     739 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00088
   PF13245.1  15 vtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraa 55 
                 + G+ G GKT tl++ ia  +  ++ p +  +l+v  +  aa
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKT-TLLKMIASGA--LKTPpRVNCLYV-EQEVAA 421
                 68********.9999999988..667778889998.444444 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.22
   PF13245.1  11 pllvvtGgPGtGKTttlaai 30 
                 +++v  G  G+GK+ tl+++
  MMETSP0890-20130614|1705_1 716 RVCV-VGSNGAGKS-TLLHL 733
                 4555.9********.99986 PP

>> PF14230.1  Domain of unknown function (DUF4333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   0.00012     0.048      19      65 ..     293     342 ..     282     347 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.00012
   PF14230.1  19 eldkaevekgvaqvLtssyglkdvs.VsCP.edlevevGatfeCt.ltvd 65 
                 ++d +++  + +++L+++y++k+++  +C  ++++  +Ga+f C+  +vd
  MMETSP0890-20130614|1705_1 293 QVDGKALSGKARKKLEKEYNAKKRQvEECKdREQRSLEGAQFACSqSAVD 342
                 799**********************447*99*************954455 PP

>> PF08268.7  F-box associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0        10   4.1e+03      68      97 ..     102     132 ..      91     139 .. 0.66
   2 ?   11.8   0.0   0.00033      0.14      51      89 ..     850     889 ..     835     914 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 10
   PF08268.7  68 eneielWVleDae.kqeWskktfvlpsseee 97 
                 ++  +  V+eD+e k+e s+++ v++++e++
  MMETSP0890-20130614|1705_1 102 DTLHDATVIEDTEvKEEISSEQNVCKKEEKK 132
                 4556667999976357888887777766655 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00033
   PF08268.7  51 inYkGklallekkslke.eneielWVleDaekqeWskktf 89 
                  +Y G + +++++     +++++lWV+e+ +  eW +  +
  MMETSP0890-20130614|1705_1 850 NEYDGGVICVTHDARLIeATNMRLWVVENRQVTEWAEPFT 889
                 58999999998888777799***************97544 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6       7.8   3.2e+03      70     103 ..      42      79 ..      12      90 .. 0.74
   2 ?   13.6   0.0   8.8e-05     0.037      25     116 ..     384     478 ..     377     483 .. 0.70
   3 ?    0.1   1.1       1.2   4.8e+02      48      98 ..     584     636 ..     573     655 .. 0.66
   4 ?    0.5   0.0      0.89   3.7e+02      23      39 ..     717     733 ..     711     764 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 7.8
                 .......HHHS-SHHHHHHHHT....-----TS-GG.G CS
  PF01637.13  70 e....eeeekkklakalgialpkaeleeilkkksklvf 103
                 +    ee+e+++ a+ + ++l+kae  +  kk +k+v+
  MMETSP0890-20130614|1705_1  42 AnqeqEEDEDETPAQPVVKKLSKAEQRKQKKKGKKNVE 79 
                 13334888888899999999999888766666666655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 8.8e-05
                 EE--TT---HHHHHHHHHH-..---HHHHH------HHHHHHHH.......HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHHHH- CS
  PF01637.13  25 iyGprrsGKTaLlkeileelkekgkrvvyyinlreefeskleefie...eeeekkklakalgialpkaeleeilkkksklvflaleellealkkk 116
                 i Gp + GKT+Llk i++  ++   rv  ++  +e++++ +++  +   + +e++ l ++ ++  +  e ++++ ++++  ++ ++ + e+lk  
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASGALKTPPRVNCLYVEQEVAADDVKAVDAvlrADKERTALMQEENELAKALENDQLSPEEQREKSERIAAVGEELKAI 478
                 89*****************9887776666666667777777766445555666666666655555555555555577777788888888888865 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 1.2
                 --HHHHH------H.HHHHHHH....HHHS-SHHHHHHHHT....-----.TS CS
  PF01637.13  48 gkrvvyyinlreef.eskleefieeeeekkklakalgialpkaeleeilk.kk 98 
                 + ++  y+++++ + +++l+++ + e+++k+l+  +++a++ka++ee+ k + 
  MMETSP0890-20130614|1705_1 584 DAYKGNYDTFKTLEkQKRLAQLKAYEKQEKQLRALKSKATSKAKAEELVKkQA 636
                 44555555555433033444443378888899999999999999999988533 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.89
                 EEEE--TT---HHHHHH CS
  PF01637.13  23 iviyGprrsGKTaLlke 39 
                 + + G  + GK++Ll  
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHL 733
                 6789**********975 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         8   3.3e+03      53      81 ..      85     111 ..      52     118 .. 0.63
   2 ?    6.9   0.0     0.011       4.7       4      22 ..     384     402 ..     383     488 .. 0.69
   3 ?   11.2   0.0   0.00054      0.23       2      63 ..     717     790 ..     717     860 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 8
   PF13671.1  53 krlyqilnklarkalsagrsvivdatnls 81 
                 +++  i  ++a  ++++g +++ dat  +
  MMETSP0890-20130614|1705_1  85 DDIDPI--ATASANQEQGEDTLHDATVIE 111
                 344444..578888999999999999776 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.011
   PF13671.1   4 lvGlpGsGKstlaerllkk 22 
                 +vG+ G GK+tl+++++  
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIASG 402
                 59************99633 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00054
   PF13671.1   2 vllvGlpGsGKstlaerllkklg...yvrlsqdtlrkrlfg........tdqqsktdytrvlkr..lyqilnkla 63 
                 v +vG  G+GKstl++ l  kl    +++ + + lr  +++        +d +   dy r+l++  +yq +++++
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKLNpteGEIKRNPRLRIGVYNqhfverlpMDENAV-DYLRRLFDdeTYQSIRNML 790
                 568**************98888777799999999999998865554433222222.4444332223666666665 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       8.9   3.7e+03      60      85 ..     214     239 ..     170     259 .. 0.59
   2 ?    0.2   0.0       1.2   5.1e+02       3      19 ..     384     400 ..     383     468 .. 0.88
   3 ?   -0.8   0.2       2.5     1e+03      41      88 ..     578     625 ..     566     677 .. 0.57
   4 ?    9.9   0.0    0.0013      0.55       1      25 [.     717     740 ..     717     749 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 8.9
                 -----CHHHHHHHHHHH--------- CS
  PF00350.18  60 kkledfdevreeieketeklagankg 85 
                  ++ d++ +r ++ek ++k++ +nk+
  MMETSP0890-20130614|1705_1 214 GDEADVSRYRAKVEKYQAKIDAENKE 239
                 33344444444444444444433333 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.2
                 EE--TT---HHHHHHH- CS
  PF00350.18   3 vvGsqSaGKSSllnaLl 19 
                 +vG   +GK++ll+ + 
  MMETSP0890-20130614|1705_1 384 IVGPNGRGKTTLLKMIA 400
                 7899999****999886 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 2.5
                 EE------------E-EET-----CHHHHHHHHHHH-----------S CS
  PF00350.18  41 geeeraseravkeevkeeekkledfdevreeieketeklagankgisk 88 
                 ++++++ + + + +  ++ +k++ + +++ + ++e++  a + k +sk
  MMETSP0890-20130614|1705_1 578 SDDKKLDAYKGNYDTFKTLEKQKRLAQLKAYEKQEKQLRALKSKATSK 625
                 555554544444454444555555555555555555444433232222 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.0013
                 EEEE--TT---HHHHHHH------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilp 25 
                 ++vvGs  aGKS+ll  L g+  +p
  MMETSP0890-20130614|1705_1 717 VCVVGSNGAGKSTLLHLLTGKL-NP 740
                 78*************9999975.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1668  (0.122001); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 1.86u 0.35s 00:00:02.21 Elapsed: 00:00:01.32
# Mc/sec: 1677.45
//
Query:       MMETSP0890-20130614|1704_1  [L=1255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-06   26.0   0.0    3.1e-05   23.6   0.0    2.2  1  PF00092.23 von Willebrand factor type A domain
    6.3e-06   26.2   0.0    6.3e-06   26.2   0.0    2.4  2  PF13519.1  von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.5e-09   3.1e-05       4     147 ..     257     396 ..     256     418 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.5e-09
                 EEEE-STTS-HHHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEE.E-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTST.TSHHHTTSEEEEEEE-----C---STHHHHHHHHHH........GEEEEEEEE--SCCCH CS
  PF00092.23   4 fvlDgSgSigeenfekvkefikkliekldigpdsvrvglvqyssdakte.vslndfkskeellsavsknlkylgggtntgkALkyalenlfss.aagsrenapkvvillTDGksndggspeaaaaklrek........klgitvfgvGvsdvde 147
                 f+lD+SgS+g  + e+ k+  + l++   i  ++   +l  ++s a+t  +sl++     + ++   +    ++g tn++++   a++ + +  +     ++++v++ll+DG++n g++p+ a ++++ k        kl++ v+++G+   ++
  MMETSP0890-20130614|1704_1 257 FALDNSGSMGR-HSESCKNSFAGLLD---IATEDC--SLTIFDSVATTLsASLRRP----DAMR---SLRLPMQGRTNISAGVASAVDCIIRLgKLDVHHDVHHVLVLLSDGQHNVGSQPRYAFQEAKTKlaesldleKLKLSVLVIGI-SSSS 396
                 89999999998.77999999999999...666665..6777999998551556664....3333...446788999************999885666677*******************99999999999********88888888888.4343 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   9.2e-10   6.3e-06       4     141 ..     257     414 ..     254     453 .. 0.72
   2 ?   -1.8   0.6      0.39   2.7e+03      19      37 ..     586     604 ..     568     721 .. 0.52

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 9.2e-10
   PF13519.1   4 lvlDvSgSMnaedvsptrldaakaalkdlldelpgdrvglvafsgsaelvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGedn........ssdieaas..........alkragikiyvvgvgsdega...............e 141
                 ++lD+SgSM  +       +  k++++ lld     + +l+ f++ a +++          +a+ sl+     +g tn++a++a a++ + + +      ++  ++vl++DG+ n               +          +l + ++ + v+g++s++++               +
  MMETSP0890-20130614|1704_1 257 FALDNSGSMGRH------SESCKNSFAGLLDI-ATEDCSLTIFDSVATTLSASLRR----PDAMRSLRLP--MQGRTNISAGVASAVDCIIRLGkldvhhDVHHVLVLLSDGQHNvgsqpryaF------QeaktklaeslDLEKLKLSVLVIGISSSSDTsvgmclrstfetvtlS 414
                 89********88......79**********95.8899********99999865554....4566777755..6799************997776677888999*********999864433220......22224444444666777777777777776656666765554444440 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.39
   PF13519.1  19 ptrldaakaalkdlldelp 37 
                 + rl+a +aa+++l  ++ 
  MMETSP0890-20130614|1704_1 586 QHRLAAFRAAATTLTTARE 604
                 4455555555544444322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.66u 0.38s 00:00:02.04 Elapsed: 00:00:00.99
# Mc/sec: 3037.81
//
Query:       MMETSP0890-20130614|1709_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:00.98
# Mc/sec: 1958.66
//
Query:       MMETSP0890-20130614|1708_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.74
# Mc/sec: 1832.89
//
Query:       MMETSP0890-20130614|1711_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-48  164.6   0.0    1.6e-48  164.1   0.0    1.3  1  PF01512.12 Respiratory-chain NADH dehydrogenase 51 Kd subunit
    1.5e-18   65.5   0.5    3.1e-18   64.5   0.3    1.5  1  PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
    7.5e-09   35.2   0.0    1.6e-08   34.1   0.0    1.6  1  PF10531.4  SLBB domain


Domain annotation for each model (and alignments):
>> PF01512.12  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.0   3.5e-52   1.6e-48       1     148 [.      67     237 ..      67     240 .. 0.97

  Alignments for each domain:
  == domain 1    score: 164.1 bits;  conditional E-value: 3.5e-52
  PF01512.12   1 vkeagivGrGGagFptgvKlkakak.kk...kylivNaaEcEPgltkDrllmreephevleGleiaaealgaekivigvrdekpeaiealekaiaeakaagl...........leievvelagkYpaGeekaLiesltgr.evprgklp..advgv.....vvnNveTlaa 148
                 +k++g++GrGGagFp+g+K+++++k ++    +l++Na+E+EPg++kDr +mr++ph+++eG  +a +a++a+ ++i++r+e+ +++  l++ai+ea++agl           +++ ++++ag+Y++Gee+aLiesl+g+ + pr k+p  a+vgv     +v NveT+a 
  MMETSP0890-20130614|1711_1  67 IKDSGLRGRGGAGFPSGLKWSFMPKkSDgrpSFLVINADESEPGTCKDREIMRKDPHKLIEGTLLAGYAMRARACYIYIRGEYFNEAVVLDEAIHEAYQAGLlgknacgsgydYDVYLHRGAGAYICGEETALIESLEGKqGKPRLKPPfpANVGVfgcpsTVTNVETVAV 237
                 79***********************5559**********************************************************************************************************************998888998************985 PP

>> PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.3   6.8e-22   3.1e-18       2      46 .]     352     396 ..     351     396 .. 0.95

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 6.8e-22
                 HHHHHHHHHHHHH-----HHHH-----HHHHHHH-------HHHH CS
   PF10589.4   2 avarfameFcaaESCGkCtPCRiGttrlvelldriargegraddi 46 
                 a++r++++F+ +ESCG+CtPCR+Gt +l ++l r+++g++++++i
  MMETSP0890-20130614|1711_1 352 AAIRRLSHFYSHESCGQCTPCREGTSWLEQMLMRMEKGQADKREI 396
                 899************************************998876 PP

>> PF10531.4  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   3.5e-12   1.6e-08       2      58 ..     263     313 ..     262     314 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 3.5e-12
                 E--B---S----EEE----BHHHHHHTT-----S.........-EEEEE-----S-- CS
   PF10531.4   2 vtVtGeVkrPgvyevpiGttlsdlleqAGGltddayrdsinltrlkaviagGpmmgi 58 
                 + ++G+V++P v+e  +  ++++l+e+ +G+++ ++       +l+avi+gG++++i
  MMETSP0890-20130614|1711_1 263 FAISGHVNNPCVVEEEMSIPMRELIEKHCGGVRGGW------DNLQAVIPGGSSVPI 313
                 569************************999999987......5***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.61
# Mc/sec: 1869.94
//
Query:       MMETSP0890-20130614|1713_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-11   44.0   0.0    1.9e-11   43.4   0.0    1.3  1  PF00085.15 Thioredoxin
    4.6e-06   27.0   0.1    6.4e-06   26.6   0.0    1.3  1  PF07749.7  Endoplasmic reticulum protein ERp29, C-terminal domain
  ------ inclusion threshold ------
       0.12   12.0   0.1       0.25   10.9   0.0    1.5  1  PF12712.2  Domain of unknown function (DUF3805)


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   4.1e-15   1.9e-11      36     103 ..       1      73 [.       1      74 [. 0.93

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 4.1e-15
                 HHHHHHHHHHHTT-..TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEE...EE---.-HHHHHHHHHH CS
  PF00085.15  36 laPeyeklaeelke..kvvlakvdvdenkdlaseygvegiPtlklfkngkkve...evegarekeklvaflkk 103
                 ++P +++l ee+ +  ++ +  vd++++k+l+se gv+g+Pt+k++ +g  ++   +++g+r+ ++l++++++
  MMETSP0890-20130614|1713_1   1 MKPAWDSLGEEYLDheNILIGDVDCTQSKELCSEQGVSGYPTIKYWIDGAGKDgakQYSGGRSLDQLKKHVED 73 
                 78***********999******************************9998776677*************9986 PP

>> PF07749.7  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.4e-09   6.4e-06      41      93 ..      88     140 ..      54     142 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHHHHHHHH---CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHT CS
   PF07749.7  41 kyakyYlkvmekilkkgaeyvekElkRLekllkgklaaekkdeltkrlNiLss 93 
                 +  +  + ++ k+++kg+  +++El+RLe +  +++ ++kk+ l kr+ iL++
  MMETSP0890-20130614|1713_1  88 DCSEQEIAYISKMTEKGSAAAQTELARLEGMKGSSMKPDKKAWLSKRIHILKQ 140
                 55566678899****************************************97 PP

>> PF12712.2  Domain of unknown function (DUF3805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-05      0.25      69     102 ..      16      51 ..       6      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.6e-05
   PF12712.2  69 klvkvgklecayskesfqeegv..yytshlwvtgad 102
                 + + +g+++c+ ske   e+gv  y t + w+ ga+
  MMETSP0890-20130614|1713_1  16 ENILIGDVDCTQSKELCSEQGVsgYPTIKYWIDGAG 51 
                 56789****************86688999***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 519.21
//
Query:       MMETSP0890-20130614|1712_1  [L=1007]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-11   44.6   0.1    3.2e-07   30.1   0.0    2.7  2  PF00249.26 Myb-like DNA-binding domain
    6.1e-07   29.3   0.2      2e-05   24.4   0.1    2.7  2  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.7e-11   3.2e-07       5      45 ..       7      45 ..       3      48 .. 0.83
   2 !   11.7   0.0   2.7e-05      0.18       3      40 ..     275     311 ..     273     316 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 4.7e-11
                -HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHH CS
  PF00249.26  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                + +E   ++  +++ G++ W+ I+r+++ gRt++ +k++w+
  MMETSP0890-20130614|1712_1  7 SVDEVRTILIEHHKQGNR-WAQISRLLP-GRTDNAVKNHWN 45
                555555555668999*99.*********.***********8 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 2.7e-05
                 SS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHH CS
  PF00249.26   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                 rWT++E +++ ++ ++  ++  +++ar++g gR   ++
  MMETSP0890-20130614|1712_1 275 RWTADEAQKFSELMHRTRKD-VAAVARELGHGRNIGEV 311
                 9*****************99.*********88876665 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.9e-09     2e-05       2      49 ..       7      54 ..       6      61 .. 0.88
   2 ?    1.7   0.0     0.037   2.5e+02       1      28 [.     276     303 ..     276     311 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.9e-09
   PF13921.1  2 tdeEdeiLlklveeygndWseIaeel.grRtplacqdrwknkLrpkisr 49
                + +E +++l  + ++gn W++I++ l g Rt +a++++w+ +Lr +++r
  MMETSP0890-20130614|1712_1  7 SVDEVRTILIEHHKQGNRWAQISRLLpG-RTDNAVKNHWNASLRRRFER 54
                66788888777888************88.***********99*998876 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.037
   PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelg 28 
                 Wt++E ++  +l+ + ++d + +a+elg
  MMETSP0890-20130614|1712_1 276 WTADEAQKFSELMHRTRKDVAAVARELG 303
                 *******************999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.40u 0.41s 00:00:01.80 Elapsed: 00:00:01.03
# Mc/sec: 2342.85
//
Query:       MMETSP0890-20130614|1715_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 916.25
//
Query:       MMETSP0890-20130614|1718_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-23   83.1   0.7    2.4e-23   82.6   0.5    1.2  1  PF00753.22 Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.044   13.1   0.7      0.061   12.7   0.4    1.4  1  PF12706.2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.5   3.6e-27   2.4e-23       4     194 .]      15     175 ..      12     175 .. 0.94

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 3.6e-27
                 EEEEEEEEE..CSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHHCSEEEEEEEEECEEEEEEEEEEEEEEEETTCCSSTEEEEEETTTTEEEETTTSSSTTSSSSSBGHHHHCCCCSEETCHHHHHHHHHHHHTSS.SEEEE.SC CS
  PF00753.22   4 vgvnsyLve..gdggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDHiGGlpglleafpapvvygaeearallrlalrdelkrkkpvrvllvdvdeevgdgilggrrllfvtghpghgpghgvvylgggkilftGDllfvagtgrlgldltlrgakvrdpslweklldsllklaglppevlvp.gH 194
                 ++++ +L+     + ++ iDt   ++  +a     l+ + ++++++++TH+H+DH+GG+++l  +f  + v+++    + +++                 d  + +gd i  g + ++++   gh+ gh++++++   ++f+GD++f+ g+gr ++            +   +  +sl+++ +lp+++ ++ +H
  MMETSP0890-20130614|1718_1  15 RDNYGFLIHdtKSKATAAIDTPQVEPILEA-----LRAKNWELTHIFNTHHHHDHAGGNAELCSKFSQVQVVAPFLEKEKIGRV----------------DQAVKGGDIIKLGALTFHIIDVGGHTLGHIAYFCPQAEAAFVGDAIFAMGCGRMFE------------GTYPQFTESLKRISSLPDDTALYcAH 175
                 788999999877788889999999999999.....8**********************************************96................5779****************************************************............77778889999*********999999 PP

>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   8.9e-06     0.061      23      63 ..      44      83 ..      25     195 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.9e-06
                HHHHHT.T--EEE-S---GGG.S-....HHHHHHS-T.EEESS CS
   PF12706.2 23 alldlp.ridavlisHaHaDHilgldslletikrlnk.pvygp 63
                al ++  ++ +++ +H H DH  g    +e++ +  + +v++p
  MMETSP0890-20130614|1718_1 44 ALRAKNwELTHIFNTHHHHDHAGG---NAELCSKFSQvQVVAP 83
                3333466999***********544...3333333333455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.56
# Mc/sec: 1084.67
//
Query:       MMETSP0890-20130614|1722_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-49  165.1  17.6    5.4e-09   36.0   0.0    7.6  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    2.4e-31  106.5  23.8    4.5e-07   29.1   0.1    7.4  7  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
    4.2e-21   74.8   0.0    4.9e-09   36.0   0.0    2.7  2  PF00651.26 BTB/POZ domain
  ------ inclusion threshold ------
      0.019   14.5   0.1        3.1    7.3   0.0    2.5  2  PF01215.14 Cytochrome c oxidase subunit Vb


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.4e-06    0.0081       6      51 .]       9      58 ..       6      58 .. 0.84
   2 !   28.0   0.1   4.9e-10   1.7e-06       1      51 []      61     108 ..      61     108 .. 0.89
   3 !   12.2   0.0   4.1e-05      0.14      24      50 ..     215     241 ..     211     242 .. 0.92
   4 !   36.0   0.0   1.6e-12   5.4e-09       1      51 []     245     294 ..     245     294 .. 0.99
   5 !   27.4   0.1   7.4e-10   2.5e-06       4      51 .]     304     354 ..     303     354 .. 0.78
   6 !   22.9   0.1   1.9e-08   6.5e-05       5      51 .]     361     414 ..     357     414 .. 0.85
   7 !   28.8   0.6   2.7e-10   9.2e-07       1      51 []     417     472 ..     417     472 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.4e-06
                EE---------.....--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13  6 sWGrndyGqLG....kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51
                 WGr+ +  L     ++  +     P+  egl  +r+v+ acG sHtl++
  MMETSP0890-20130614|1722_1  9 VWGRGIELGLEppvgIEAKKFCIGQPKAMEGLGEERIVDCACGESHTLLV 58
                5888875555588888888888899**********************975 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.9e-10
                 TTEEEEE---------.--------S-EE.-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvk.veglsgvrvvqvacGgsHtlal 51 
                 dG+V s+Grn++GqLG     ++ + P+  vegl+++  ++va+G++H++++
  MMETSP0890-20130614|1722_1  61 DGDVVSFGRNREGQLG----RSSDSAPCGrVEGLEDEVCKSVAAGAFHSIVV 108
                 899*************....6666677655*******************986 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 4.1e-05
                 --S-EE-GGG------EEE-----EEE CS
  PF00415.13  24 vlvPvkveglsgvrvvqvacGgsHtla 50 
                 ++ P++ ++l++vr+  va+G+ Htla
  MMETSP0890-20130614|1722_1 215 LCRPRLATSLNHVRIETVAAGYGHTLA 241
                 688**********************98 PP

  == domain 4    score: 36.0 bits;  conditional E-value: 1.6e-12
                 TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 dG++y+ G nd+GqLG +g+  n  + + ve++ +  v+q+a+G++H+la+
  MMETSP0890-20130614|1722_1 245 DGQLYASGYNDRGQLG-LGHRCNIDIFQHVETFAHSFVKQIAAGSQHSLAI 294
                 9***************.********************************97 PP

  == domain 5    score: 27.4 bits;  conditional E-value: 7.4e-10
                 EEEE---------.--------S-EE-GGG--...----EEE-----EEEE CS
  PF00415.13   4 VysWGrndyGqLGkggseenvlvPvkveglsg...vrvvqvacGgsHtlal 51 
                 +++WG+++ GqLG+g     +l Pv+v+   +   +  +  a+G++H++++
  MMETSP0890-20130614|1722_1 304 LFAWGQGSLGQLGLGRRVTGRLRPVPVTISDNgnnKIPITCAAGANHSIVI 354
                 7************66666666666666666666587789999******986 PP

  == domain 6    score: 22.9 bits;  conditional E-value: 1.9e-08
                 EEE---------........--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   5 ysWGrndyGqLG.......kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 y++G  +y qLG          ++++ +vP++v   ++++ v+v+cG+++++a+
  MMETSP0890-20130614|1722_1 361 YGFGHAEYFQLGgigtggnDFIHSDYYTVPRPVLPAPDRPLVAVCCGANFSIAI 414
                 9*************9887744466778888888888888*************97 PP

  == domain 7    score: 28.8 bits;  conditional E-value: 2.7e-10
                 TTEEEEE---------.--------S-EE..-GGG--....----EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvk..veglsg....vrvvqvacGgsHtlal 51 
                 +G++ sWG+ ++G LG  g++   ++P++  vegl g    ++vv+++ G +H ++l
  MMETSP0890-20130614|1722_1 417 NGSIISWGWPQHGVLG-RGTSFAASTPTPhsVEGLDGsrgtPPVVKISGGTRHAVCL 472
                 59999***********.88888888888888***********************997 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.3e-10   4.5e-07       5      30 .]      49      74 ..      45      74 .. 0.95
   2 !   13.3   0.1   1.2e-05     0.042       2      24 ..      96     118 ..      95     123 .. 0.92
   3 !   25.7   0.0   1.6e-09   5.5e-06       2      30 .]     230     258 ..     229     258 .. 0.96
   4 !   25.7   0.1   1.6e-09   5.5e-06       1      30 []     281     314 ..     281     314 .. 0.95
   5 !    4.7   0.0    0.0064        22       5      19 ..     345     359 ..     345     370 .. 0.82
   6 !   17.1   0.7     8e-07    0.0027       2      29 ..     402     429 ..     402     430 .. 0.92
   7 ?    2.7   0.0     0.027        93       1      17 [.     459     475 ..     459     477 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.3e-10
                E-----EEEE-.---EEEE---TTST CS
   PF13540.1  5 saGgyHtcaLtsdGaVlcWGsNssGQ 30
                ++G +Ht+ +t+dG+V+++G+N  GQ
  MMETSP0890-20130614|1722_1 49 ACGESHTLLVTQDGDVVSFGRNREGQ 74
                8************************9 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.2e-05
                 -EEE-----EEEE-.---EEEE- CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWG 24 
                 +sv+aG++H++++t +G+++ +G
  MMETSP0890-20130614|1722_1  96 KSVAAGAFHSIVVTMSGRLYEFG 118
                 79****************99777 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 1.6e-09
                 -EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 + v+aG+ Ht+a t dG++++ G N+ GQ
  MMETSP0890-20130614|1722_1 230 ETVAAGYGHTLARTIDGQLYASGYNDRGQ 258
                 67**************************9 PP

  == domain 4    score: 25.7 bits;  conditional E-value: 1.6e-09
                 --EEE-----EEEE-.....---EEEE---TTST CS
   PF13540.1   1 VvsvsaGgyHtcaLts....dGaVlcWGsNssGQ 30 
                 V++++aG+ H++a+++    +  +++WG++s GQ
  MMETSP0890-20130614|1722_1 281 VKQIAAGSQHSLAIVQvknkSAILFAWGQGSLGQ 314
                 89***************888888**********9 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0064
                 E-----EEEE-.--- CS
   PF13540.1   5 saGgyHtcaLtsdGa 19 
                 +aG++H++++++ G+
  MMETSP0890-20130614|1722_1 345 AAGANHSIVIDAHGK 359
                 89********99987 PP

  == domain 6    score: 17.1 bits;  conditional E-value: 8e-07
                 -EEE-----EEEE-.---EEEE---TTS CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWGsNssG 29 
                 v+v++G+++++a+ ++G++ +WG+  +G
  MMETSP0890-20130614|1722_1 402 VAVCCGANFSIAIADNGSIISWGWPQHG 429
                 689********************97666 PP

  == domain 7    score: 2.7 bits;  conditional E-value: 0.027
                 --EEE-----EEEE-.- CS
   PF13540.1   1 VvsvsaGgyHtcaLtsd 17 
                 Vv++s G +H++ L +d
  MMETSP0890-20130614|1722_1 459 VVKISGGTRHAVCLARD 475
                 89*********998765 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.6e-12   5.4e-09      11     104 ..     495     594 ..     485     599 .. 0.88
   2 !   36.0   0.0   1.4e-12   4.9e-09      10     109 ..     619     735 ..     610     737 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.6e-12
                 --EEEEETT..TEEEEE-HHHHHHH-HHHHHHTTTTTTTT-SEE......EEEETTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHHH CS
  PF00651.26  11 cDvtlvvgd..gkefkahkavLaarSpyFkalftggeieestvs......eieledvepevfealLefiYtgeleitseenveelLaaadllqiprlkdace 104
                  D+ ++v+   ++++kah avLaarS y++ l +++ i+  t++      +i    v+   ++al++++Yt++++ +  + + +l ++ ++l ++   d c 
  MMETSP0890-20130614|1722_1 495 FDLEIKVDGdeNSSVKAHAAVLAARSRYLRGLIKHH-IKSTTKEplllpaKIGGVAVSTAMIRALVNYLYTDRVDAP-PHRLRALSKLGRYLCMDLFADLCD 594
                 68888888778899**********************.77777668888888888889999****************8.9****************9999995 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 1.4e-12
                 S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTT...........TTTT-SEE............EEEETTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
  PF00651.26  10 lcDvtlvvgdgkefkahkavLaarSpyFkalftgg...........eieestvs............eieledvepevfealLefiYtgeleitseenveelLaaadllqiprlkdaceeflke 109
                   D+ l+++ g+e+ ahka+ a  S+yF al   +           +      +              + + ++  v  a+L+f+Y+g + ++++    +l+ aadll+i+ l+ ace+fl e
  MMETSP0890-20130614|1722_1 619 AADLRLRLYGGRELCAHKAIIATNSEYFDALIHFEthrnqhdekteQ------KdehhhtlelldwGAPESLITLPVALAVLKFLYSGAILVDNDVSPFDLIMAADLLRIQPLVLACERFLVE 735
                 5799999999********************98777668887765532......1334444555555455566777799**************8777778999999***************987 PP

>> PF01215.14  Cytochrome c oxidase subunit Vb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0077        26      76     103 ..      32      57 ..      22      62 .. 0.80
   2 ?    7.3   0.0   0.00091       3.1      36      89 ..     176     229 ..     158     240 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0077
                 SS-CEEEESSSCEEE----STT-S.S-- CS
  PF01215.14  76 kdPilvesiddkRivgCtgseaeshtil 103
                  +P  +e + ++Riv C ++e  sht+l
  MMETSP0890-20130614|1722_1  32 GQPKAMEGLGEERIVDCACGE--SHTLL 57 
                 578899999**********86..67766 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00091
                 -----HHHH----HHHHHHHHH----TT--S--B-----TSS-CEEEESSSCEE CS
  PF01215.14  36 GevPtDleqatgleRevllaelkgrdafdikaldaskGtlkdPilvesiddkRi 89 
                  + P ++e+a  l R+  l++ + r a +i  +da    l  P l +s+++ Ri
  MMETSP0890-20130614|1722_1 176 DDEPQNEEDAELLSRTQALTQEEARAAVGIARMDARRTKLCRPRLATSLNHVRI 229
                 566999***********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:00.71
# Mc/sec: 2635.99
//
Query:       MMETSP0890-20130614|1720_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-06   25.6   0.0    1.5e-05   24.2   0.0    1.7  2  PF00632.20 HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
       0.12   12.2   7.3        3.8    7.4   0.2    2.6  2  PF00170.16 bZIP transcription factor
        5.2    6.7  24.2         10    5.8  16.8    1.4  1  PF05887.6  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.64   2.9e+03      35      62 ..     241     268 ..     205     271 .. 0.66
   2 !   24.2   0.0   3.3e-09   1.5e-05       4      94 ..     553     644 ..     550     645 .] 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.64
                 ..----TTHHHHHHH-------TTT--- CS
  PF00632.20  35 dleessndnlklfkflGkligkaiyegi 62 
                  +++s++dn   f + G l++ ai+  i
  MMETSP0890-20130614|1720_1 241 ASSKSKSDNVLTFALTGSLCAGAIVFAI 268
                 2344555777788888888888887666 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 3.3e-09
                 HHHHT-TT---E....ESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHH CS
  PF00632.20   4 skellnpklglf....yvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpel 94 
                 s++l++p++g+f      + ++++l    ++   +++  + n++++  +f+G +igka++eg++++ + s ++lk++   ++v+++dl++id +l
  MMETSP0890-20130614|1720_1 553 SEQLFDPSFGVFriahAAEGDDYILVEDDEMH--EQIDMTMNERINRIEFAGHFIGKALLEGHQIKPHPSIVLLKHIA-CEPVDFSDLQNIDAQL 644
                 57788999999988753333334443443333..3344566788999*******************************.8************986 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2   0.00083       3.8      30      63 ..     204     236 ..     201     237 .. 0.90
   2 ?    7.1   1.4     0.001       4.5      12      45 ..     328     361 ..     326     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00083
                 HHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16  30 eLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  Le+kv eL++ N aL+ ++ ++ k +++l+se+
  MMETSP0890-20130614|1720_1 204 TLEQKVRELSKDN-ALAYTMINIDKSIKNLESET 236
                 69***********.7*************999985 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
  PF00170.16  12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                 +N +AA++sRqR+  + +  e+ +  L++  + L
  MMETSP0890-20130614|1720_1 328 RNNTAATESRQRRMNSSDDEENVSNRLSSPQSVL 361
                 8************998888777777777665555 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  16.8    0.0022        10      71     121 ..       4      54 ..       1      63 [. 0.44

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0022
   PF05887.6  71 epeeegeeetepeeegeeetepeeeeepepepetepepepepepepepepG 121
                 +p   + +++ p++++++ + p +++ p p p++ p p p p p+p   p 
  MMETSP0890-20130614|1720_1   4 KPTSAPTPKPTPKPTPKPTPSPTPKPTPIPTPKPTPTPTPIPTPKPTSAPT 54 
                 333344444444444444444444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       723  (0.0528818); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.12u 0.42s 00:00:01.54 Elapsed: 00:00:01.03
# Mc/sec: 1500.63
//
Query:       MMETSP0890-20130614|1719_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00032   20.3   0.0    0.00063   19.4   0.0    1.4  1  PF08283.6  Geminivirus rep protein central domain
    0.00033   20.3   0.0    0.00089   18.9   0.0    1.8  1  PF00799.15 Geminivirus Rep catalytic domain


Domain annotation for each model (and alignments):
>> PF08283.6  Geminivirus rep protein central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.2e-08   0.00063       9      66 ..     305     362 ..     298     367 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.2e-08
   PF08283.6   9 yakalnatskeeaLsiikeelPkdwvlklhnleynaerlFpkppepyvppfplssfls 66 
                 y++a +a+s eeaL++i e+ P+d +++ +++  n +   +++pe   p+++l++fl 
  MMETSP0890-20130614|1719_1 305 YHEARHANSVEEALDMIAEHNPQDMFMRGEQIAKNCRLAMKHAPELPPPHYKLADFLM 362
                 556669******************************9999999999888888888765 PP

>> PF00799.15  Geminivirus Rep catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-07   0.00089       3     104 ..     160     283 ..     158     292 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.3e-07
  PF00799.15   3 lraknvFLtYpkCs...lekeealeklaellkkvekk....yi...kvarelhedG.....ephlhaliqlekkvkitder...ffdlesdtrsakfhpniqaa....kssskvkeYitkdgdt 104
                 ++++++ +t++ Cs   ++k  +l kl+e+ ++ + +     +   ++a e he+      + h h+ +  + ++ i+d r   +fdl  ++  a  hp iq+     k+  +v +Y  k gd+
  MMETSP0890-20130614|1719_1 160 VTSAKLHITFSGCSaaeITKAIILAKLREVARTHHFRgrelLLeewQIAWEDHENPadpiySCHAHVYVCYSSRIDIRDYRhctLFDLPGENGRAVRHPEIQGVgkfpKDRTNVLNYGRKYGDY 283
                 566666677777752223455555555555443332111111122268888888853333368***************9874447*****************9655558899999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 1062.48
//
Query:       MMETSP0890-20130614|1723_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-53  176.1   0.0    7.7e-20   70.0   0.0    2.4  3  PF13475.1 Domain of unknown function (DUF4116)
     0.0028   17.2   0.0       0.53    9.8   0.0    2.9  3  PF07892.6 Protein of unknown function (DUF1667)
     0.0089   15.1   0.0       0.01   14.9   0.0    1.1  1  PF03388.8 Legume-like lectin family
  ------ inclusion threshold ------
      0.016   15.0   0.1          1    9.2   0.0    2.5  3  PF12310.3 Transcription factor protein N terminal
       0.18   11.5   0.7         15    5.3   0.0    3.0  3  PF14439.1 Bd3614-like deaminase


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.8e-19   4.8e-16       1      45 [.       4      48 ..       4      53 .. 0.97
   2 !   56.0   0.0   6.3e-19   1.7e-15       1      48 [.      29      76 ..      29      76 .. 0.97
   3 !   70.0   0.0   2.8e-23   7.7e-20       1      49 []      54     102 ..      54     102 .. 0.97

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 1.8e-19
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyas 45
                DrEivl+av+++g al y+seeL++D+ei l+Av qng +l+yas
  MMETSP0890-20130614|1723_1  4 DREIVLAAVTQDGAALFYASEELQKDREIFLAAVTQNGLVLEYAS 48
                9*******************************************9 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 6.3e-19
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
                DrEi l+av++ng +l+y+s  +knD eivl+Av qng+al+yas e+
  MMETSP0890-20130614|1723_1 29 DREIFLAAVTQNGLVLEYASQGFKNDHEIVLAAVTQNGCALEYASREI 76
                9********************************************875 PP

  == domain 3    score: 70.0 bits;  conditional E-value: 2.8e-23
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 D Eivl+av++ng+al+y+s e+knD+eivl+Avk++g+al+yas eLr
  MMETSP0890-20130614|1723_1  54 DHEIVLAAVTQNGCALEYASREIKNDREIVLAAVKRSGDALKYASIELR 102
                 67*******************************************9998 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.042   1.1e+02       6      27 ..      21      42 ..      16      48 .. 0.83
   2 ?    2.8   0.0     0.031        84       5      27 ..      45      67 ..      40      70 .. 0.87
   3 !    9.8   0.0   0.00019      0.53       4      34 ..      69      99 ..      66     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.042
   PF07892.6  6 YakkeltnpkriltstVkvegg 27
                Ya +el++ + i+ + V  +g 
  MMETSP0890-20130614|1723_1 21 YASEELQKDREIFLAAVTQNGL 42
                9************999987765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.031
   PF07892.6  5 eYakkeltnpkriltstVkvegg 27
                eYa + ++n   i+ + V  +g+
  MMETSP0890-20130614|1723_1 45 EYASQGFKNDHEIVLAAVTQNGC 67
                8**************99988776 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00019
   PF07892.6  4 eeYakkeltnpkriltstVkveggelplvpV 34
                 eYa +e++n + i+ + Vk +g  l+  ++
  MMETSP0890-20130614|1723_1 69 LEYASREIKNDREIVLAAVKRSGDALKYASI 99
                69******************99999888775 PP

>> PF03388.8  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.7e-06      0.01      77     149 ..      12      82 ..       7     101 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.7e-06
   PF03388.8  77 legdglaiwytsergk.egpvFgskdkfdGlaifldtydndngpdqknkptvsvmlndg.slsydhekdgkaqel 149
                 +++dg a++y+se+ + +  +F ++++ +Gl +   +   + g ++ +++ + ++  +g  l+y+ +++ ++ e+
  MMETSP0890-20130614|1723_1  12 VTQDGAALFYASEELQkDREIFLAAVTQNGLVLEYAS---Q-GFKNDHEIVLAAVTQNGcALEYASREIKNDREI 82 
                 789*********9988799***********9887664...3.333444666666666662678888887776665 PP

>> PF12310.3  Transcription factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.1   5.7e+03       5      20 ..      12      27 ..       9      31 .. 0.54
   2 ?    9.2   0.0   0.00037         1       3      24 ..      35      56 ..      33      59 .. 0.89
   3 ?    3.5   0.0     0.022        61       3      24 ..      60      81 ..      58      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.1
   PF12310.3  5 vqkkelvfefasngvd 20
                v + + ++ +as++ +
  MMETSP0890-20130614|1723_1 12 VTQDGAALFYASEELQ 27
                4555555556666654 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00037
   PF12310.3  3 avvqkkelvfefasngvddeeq 24
                a+v +++lv+e+as+g ++ ++
  MMETSP0890-20130614|1723_1 35 AAVTQNGLVLEYASQGFKNDHE 56
                6899*************99887 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.022
   PF12310.3  3 avvqkkelvfefasngvddeeq 24
                a+v +++ ++e+as ++++  +
  MMETSP0890-20130614|1723_1 60 AAVTQNGCALEYASREIKNDRE 81
                68999*********99977654 PP

>> PF14439.1  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   4.1e+02       6      25 ..       3      22 ..       1      25 [. 0.79
   2 ?    5.3   0.0    0.0054        15       5      27 ..      27      49 ..      23      62 .. 0.84
   3 ?    2.4   0.0     0.042   1.1e+02       5      25 ..      77      97 ..      72      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.15
   PF14439.1  6 rDRkvvAalvsdqGelldaa 25
                 DR++v a v ++G  l +a
  MMETSP0890-20130614|1723_1  3 NDREIVLAAVTQDGAALFYA 22
                79**9999999999877665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0054
   PF14439.1  5 erDRkvvAalvsdqGelldaavn 27
                ++DR+++ a v ++G +l++a  
  MMETSP0890-20130614|1723_1 27 QKDREIFLAAVTQNGLVLEYASQ 49
                79*****************9975 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.042
   PF14439.1  5 erDRkvvAalvsdqGelldaa 25
                + DR++v a v+++G+ l++a
  MMETSP0890-20130614|1723_1 77 KNDREIVLAAVKRSGDALKYA 97
                68*************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 357.72
//
Query:       MMETSP0890-20130614|1721_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-76  257.2   0.0    2.9e-76  256.4   0.0    1.4  1  PF00202.16 Aminotransferase class-III


Domain annotation for each model (and alignments):
>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.4   0.0   2.1e-80   2.9e-76       2     339 .]      94     471 ..      93     471 .. 0.90

  Alignments for each domain:
  == domain 1    score: 256.4 bits;  conditional E-value: 2.1e-80
                 EEEEETTEEEETT--EEEBTTHHHHTT------HHHHHHHHHHHCC-S---TTTCEEHHHHHHHHHHHHHS......-----EEEEE----HHHHHHHHHHH...SS.HHCT--EEEEETTT-----HHCCCHT--TTTT-------TTEEEE-TT-TTC.......-BHHHHHHHHHHHHHHHHTCCCEEEEEE-SEE-----EE--CCCHHHHHHHHHHCT-EEEEE-S----------SGGGG..............-----SEEEE-CTC---.---EEEEE-HHHHTTSHH--...............-SSTT-HHHHHHHHHHHHHHHHTTHHHHHHH---TTTHHHH.HHHCC-TTEEEEE-----EEEEEEC CS
  PF00202.16   2 itkakGvyltdvdGrrylDflsgiavvnlGhahpkiveavkeqadklshvsfralttepalklaeklaelt......PkgldkvflansGseanetAlKlarayekkkgatektkiiafegafhGrtlgalsvtkskkykklfgpllpgveilpypdlka.......aeeekalleeaerlikevkkeeiaAvivEPiqgegGvvvasegflaklreickkhnvllivDEvqtGfGrtGklfAaeh..............agvepDlmtlaKaltgG.lplsavlataevmqafqpgs.............hgttfggnplacavalavlevieeeellenaqekgerlkkgLe.eLkekydvikevRgkGlliaielvk 339
                 i+ +kG+ l   dG ++lD ++g++ vn+G+ ++++++++ + + +l +   + l ++++++la+k+ +l+      P+g  +v +++sGseanetA+K+ar+y+ ++g + ++kii+  +a+hG+  +++++t++ + k ++g    g++++p p +++        e+ + +l+++e+       e iaA+i+EP+ + g v++++ ++++++r++c+k+++lli+DEv +G Gr Gk+f+++                 ++pD++t+aK+lt+G lpl a   ++++++ f+++s             + +t+gg+p+acav+l+ +e+ie e+l ++a+++g++l++ L  ++ ++ + ++++R+kGlli+ielv+
  MMETSP0890-20130614|1721_1  94 IVSSKGSSLIRSDGVEILDGIAGLWCVNAGYGREELAQTAYQAMLELPYHA-PTLASPAQIDLATKISNLLqlepnkPNGGGHVYFTSSGSEANETAFKIARQYHAARGDALRHKIISRYRAYHGNSAASMAATGQAERKMGYGVEPAGFIKVPPPYPYRrhhkmsiDEHIDFILDTMEQTFIFEGPESIAAIIMEPVISGGAVLIPTSKYISGVRDLCDKYGALLIFDEVVSGYGRLGKMFGHQAmstfesspdkedytKIIKPDIITMAKGLTSGyLPLGACAVSDKIFSHFYNDSessvlpsrlahlrQVHTYGGHPVACAVGLKNIEIIESENLPQRAHDMGSYLNNSLIkTIGDH-PLVGDIRSKGLLIGIELVE 471
                 6779************************************99999999866.******************************************************************************************************999999666555333333344444444444456778****************************************************99875553333333222223667*****************************988899***********999***************************************9677775.****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:01.09
# Mc/sec: 1189.38
//
Query:       MMETSP0890-20130614|1726_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   14.6   0.1        5.1    7.3   0.0    2.1  2  PF11806.3 Domain of unknown function (DUF3327)
      0.071   12.4   0.1       0.13   11.6   0.0    1.3  1  PF03537.8 TM1410 hypothetical-related protein


Domain annotation for each model (and alignments):
>> PF11806.3  Domain of unknown function (DUF3327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00074       5.1      71     109 ..      11      49 ..       3      58 .. 0.83
   2 ?    5.6   0.0    0.0024        16       3      47 ..      60     105 ..      58     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00074
   PF11806.3  71 akvfckkayrkslngariDplNefldlpaahqalledSi 109
                 a + c+++++ s+    iD++Ne+++ + ++++ +e+S+
  MMETSP0890-20130614|1726_1  11 ASMLCEDGIYDSVYLDVIDNVNEEAISQRKNNKNREKSL 49 
                 6778999999999999*********98888888888885 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0024
   PF11806.3   3 lvTF........lWrkarekssalvrvykrsegvkdqndkrysrlqrLpgtdv 47 
                 + TF        +W     ++++l rvy ++ +   ++    s l +L + d+
  MMETSP0890-20130614|1726_1  60 RHTFskddhalwIWL----QTRNLARVYHYVRELGAKK---VSDLAHLTDEDI 105
                 567777777766888....999************6665...99*****99998 PP

>> PF03537.8  TM1410 hypothetical-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.8e-05      0.13      96     147 ..       9      61 ..       4      77 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.8e-05
   PF03537.8  96 arldrlvakG.fdGvflDnvdsyerandngtgrpetaqamvalvkelaarAra 147
                 +r+++l + G +d v+lD++d++ +++ ++ +  + +++ +++  ++++  r+
  MMETSP0890-20130614|1726_1   9 QRASMLCEDGiYDSVYLDVIDNVNEEAISQRKNNKNREKSLSYKDAISTNSRH 61 
                 577777777758***********996666677777777888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       814  (0.0595377); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 421.07
//
Query:       MMETSP0890-20130614|1725_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.8   0.4       0.22   11.1   0.3    1.3  1  PF04988.7 A-kinase anchoring protein 95 (AKAP95)


Domain annotation for each model (and alignments):
>> PF04988.7  A-kinase anchoring protein 95 (AKAP95)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   1.6e-05      0.22     100     153 ..      82     135 ..      68     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.6e-05
   PF04988.7 100 liPalfslvqkHlksedHnknrra..mkeqlkkesvlvAksilnnknikkklekyl 153
                 liP   +   +Hl s++H k+rr+  m+ +++ e+ ++A+++  ++++k++++  +
  MMETSP0890-20130614|1725_1  82 LIPSRLRNAGRHLVSSTHDKQRRRlsMMFRMVSETYAMARQF--ERKVKQRFDVVV 135
                 6999999999*********99986336777788888888876..778888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.99
# Mc/sec: 653.55
//
Query:       MMETSP0890-20130614|1728_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.013   15.1   0.0    1.2  1  PF12351.3 Ca2+ regulator and membrane fusion protein Fig1
      0.073   13.2   1.3       0.14   12.3   0.9    1.5  1  PF10199.4 Alpha and gamma adaptin binding protein p34


Domain annotation for each model (and alignments):
>> PF12351.3  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.8e-06     0.013      42      98 ..      12      68 ..       4     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-06
   PF12351.3 42 teladdlksssskstedplnLvelakkfsdkivhpyllmaaivLtllsflllayfpg 98
                ++ a++ ++++++++ ++ +L+   +k+++++++ +l +  ++L +l ++++++fp 
  MMETSP0890-20130614|1728_1 12 DKAASIAQQQQQQQQRKKKQLLRARSKLANELCVGFLGLLYLALYVLYLVITTAFPS 68
                3444444544555666699***********************************994 PP

>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9   2.1e-05      0.14      53     118 ..      18     118 ..       6     120 .] 0.63

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   PF10199.4  53 kqddsqpastepdksaaeeesasaefdddsdda...........................................isdeqneeeegleeadvedlesllsklqaardn 118
                 +q+++q+++ ++++            +++ +++                                           +++ +++   ++++a v ++es ++k ++++++
  MMETSP0890-20130614|1728_1  18 AQQQQQQQQRKKKQLLRA--------RSKLANElcvgflgllylalyvlylvittafpsdiseeddahhrdvglakANEREKNVLCDETQALVMNFESCMKKTRNMKNM 118
                 333333322222222111........22223336677788899999999999999999998877777777776665555556666666666666*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1514  (0.110737); expected 273.4 (0.02)
Passed bias filter:                      900  (0.065828); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|1730_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 231.65
//
Query:       MMETSP0890-20130614|1724_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-33  113.9   0.7    4.4e-15   55.9   0.0    3.3  3  PF00005.22 ABC transporter
    6.8e-19   68.8   0.2     0.0063   16.3   0.0    4.4  4  PF13304.1  AAA domain
    4.8e-11   42.1   4.9    0.00066   18.8   0.0    5.0  4  PF02463.14 RecF/RecN/SMC N terminal domain
    9.9e-08   31.2   0.4      0.013   14.9   0.1    2.5  2  PF13555.1  P-loop containing region of AAA domain
    6.9e-07   29.6   0.0      0.032   14.6   0.0    2.9  2  PF08477.8  Miro-like protein
    2.7e-06   26.5   0.0     0.0052   15.8   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
    2.3e-05   24.3   0.3      0.021   14.8   0.0    3.2  2  PF13401.1  AAA domain
    5.8e-05   22.2   4.4       0.49    9.2   0.0    3.9  4  PF13175.1  AAA ATPase domain
    9.6e-05   22.6   3.2       0.28   11.4   0.2    3.1  2  PF13191.1  AAA ATPase domain
    0.00013   21.2   2.3       0.65    9.2   0.0    3.9  4  PF13481.1  AAA domain
    0.00014   21.4   0.1       0.61    9.5   0.0    2.5  2  PF05729.7  NACHT domain
    0.00019   21.3   0.0       0.25   11.2   0.0    2.9  2  PF01926.18 50S ribosome-binding GTPase
    0.00025   21.0   0.0       0.22   11.6   0.0    2.6  2  PF00910.17 RNA helicase
    0.00057   19.1   0.3       0.61    9.1   0.0    2.8  2  PF12846.2  AAA-like domain
    0.00067   19.4   0.3      0.067   12.9   0.0    3.0  2  PF13671.1  AAA domain
    0.00087   19.5   9.8      0.057   13.6   0.2    3.5  2  PF13476.1  AAA domain
     0.0015   18.2   2.2     0.0015   18.2   1.5    2.4  2  PF12848.2  ABC transporter
     0.0015   19.1   0.3        2.5    8.8   0.2    3.5  2  PF13207.1  AAA domain
     0.0017   17.9   0.0       0.75    9.3   0.0    2.7  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
     0.0022   17.4   1.2       0.64    9.3   0.0    2.7  2  PF01580.13 FtsK/SpoIIIE family
     0.0047   17.0   0.0        1.8    8.6   0.0    2.9  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.006   15.2   2.2       0.79    8.3   0.0    2.6  3  PF03308.11 ArgK protein
     0.0065   16.1   0.5        4.1    7.0   0.0    3.0  3  PF00350.18 Dynamin family
     0.0066   15.2   0.1        1.1    7.9   0.0    2.6  2  PF05673.8  Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.011   15.2   0.2       0.62    9.6   0.1    2.6  2  PF03266.10 NTPase
      0.012   15.4   0.2       0.69    9.7   0.0    3.2  2  PF13558.1  Putative exonuclease SbcCD, C subunit
      0.018   14.9   0.3        1.1    9.1   0.0    2.9  2  PF13521.1  AAA domain
      0.033   13.6   0.1       0.25   10.8   0.0    2.2  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.039   13.7   0.0         17    5.2   0.0    3.1  2  PF13173.1  AAA domain
       0.04   12.8   0.0        4.1    6.2   0.0    2.4  2  PF00735.13 Septin
      0.048   13.3   7.2       0.75    9.4   0.1    3.6  3  PF01935.12 Domain of unknown function DUF87
      0.064   12.6   0.0       0.99    8.7   0.0    2.5  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.064   13.4   0.8         18    5.5   0.0    3.0  2  PF13238.1  AAA domain
      0.078   12.2   0.1         11    5.3   0.0    2.5  2  PF00009.22 Elongation factor Tu GTP binding domain
       0.09   11.2   0.1        0.5    8.8   0.0    1.9  2  PF02456.10 Adenovirus IVa2 protein
      0.091   12.4   2.8         12    5.6   0.1    3.7  3  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       8.2   3.1e+03      61      61 ..     163     163 ..      93     212 .. 0.55
   2 !   54.6   0.0   3.1e-17   1.2e-14      36     118 .]     275     387 ..     252     387 .. 0.74
   3 !   55.9   0.0   1.1e-17   4.4e-15       1     118 []     581     695 ..     581     695 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 8.2
                 - CS
                 x RF
  PF00005.22  61 e 61 
                 e
  MMETSP0890-20130614|1724_1 163 E 163
                 1 PP

  == domain 2    score: 54.6 bits;  conditional E-value: 3.1e-17
                 H....EEEE-------..--BH...........HHHHH----S--..............-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 x....xxxxxxxxxxx.xxxxx...........xxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  36 r....igyipqdpllf.peltv...........renldmakeekk..............tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                      i y+ qd +l+ +e ++           +++l  a+++k+              + +r++ +le++g++++l++++ + LSgG+++r  lA+al+ +p+lllLDEPtn
  MMETSP0890-20130614|1724_1 275 PetclIHYVNQDVTLTtEEAEMqpweivvradiERELLLAEKSKTpqiveklqaidadsAPRRATTLLEELGFSSALRERKLKALSGGWRVRTFLAAALFARPDLLLLDEPTN 387
                 12235999999999996444446666666666633333333333366666666667777****************88888********************************8 PP

  == domain 3    score: 55.9 bits;  conditional E-value: 1.1e-17
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------...--BHHHHHH----S--.......-HHHHHHHHHH---HH.HH--..----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekk.......tdkrieevlekvglde.lldk..srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 STL+k++ gel+pt g++ ++ + r            ++++ q++ +    +lt  + ++ +             d +++ +l+ +g+++   d   + +s+LSgGq+ rvalA++   +p++l+LDEPtn
  MMETSP0890-20130614|1724_1 581 STLVKIIIGELEPTIGQVIRSgHAR------------FAVVNQHHSDQvdLRLTPLDFMRTK----FpgdgsyeHDLKLRSHLASCGCTGgNPDLqnTIASSLSGGQRSRVALAAVSYVEPHVLILDEPTN 695
                 9********************4455............********99966555554444333....12344666**************985444355999******************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.8e-05     0.018       3      62 ..     250     292 ..     249     312 .. 0.84
   2 !   16.2   0.0   1.8e-05     0.007     244     303 .]     366     423 ..     351     423 .. 0.82
   3 !   15.0   0.1   4.3e-05     0.016       3      19 ..     571     587 ..     570     604 .. 0.89
   4 !   16.3   0.0   1.7e-05    0.0063     226     302 ..     656     726 ..     637     727 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.8e-05
   PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeie 62 
                 ++iG+Ng GKS+lLkal+                   +ie+ip +    + ++++++++e
  MMETSP0890-20130614|1724_1 250 GLIGRNGKGKSTLLKALACR-----------------SIENIPETCLIHYVNQDVTLTTE 292
                 59***************986.................88888887777777777777776 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.8e-05
   PF13304.1 244 llalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQl.ifTTHSpvlld 303
                    l++al+ ++   ++ll+DEp n+L   ++  l++ l+e++ +   + ++++H+  +ld
  MMETSP0890-20130614|1724_1 366 RTFLAAALFARP---DLLLLDEPTNHLSIAAVLWLARELEESEVWQDRIiVIVSHDRAFLD 423
                 445777777777...*************************9999888888*****988775 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 4.3e-05
   PF13304.1   3 viiGpNgsGKSnlLkal 19 
                 vi+G+Ng+GKS+l k++
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKII 587
                 8***************9 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 1.7e-05
   PF13304.1 226 kgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 + d ++  +s+lS G+++  al++  +  +    vl++DEp n+L+ + + +l++ ++  +     +++++H+  ++
  MMETSP0890-20130614|1724_1 656 NPDLQNTIASSLSGGQRSRVALAAVSYVEP---HVLILDEPTNNLDLESVAALADCVRRFQG---AVVCVSHDQAFV 726
                 567789999*********977776666666...99*******************99977766...999999997766 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.022       8.2      52     107 ..      82     134 ..      76     167 .. 0.78
   2 !    7.8   0.0     0.004       1.5      28      44 ..     250     266 ..     235     439 .. 0.61
   3 !    7.5   0.1    0.0051       1.9      26      44 ..     569     587 ..     561     619 .. 0.79
   4 !   18.8   0.0   1.7e-06   0.00066     136     210 ..     666     735 ..     656     743 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.022
                 --.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  52 sakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkg 107
                 ++k+++++  +++i   ks ++  + ev+i f++ +++ +ie++e+++t++  ++ 
  MMETSP0890-20130614|1724_1  82 KKKTMKKKGGKAIIAG-KS-NAEPKEEVQIKFSEPSEK-QIESNEIKVTTTTTTNA 134
                 5788999999999987.44.4445669*******9998.99999999999887765 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.004
                 EE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
  PF02463.14  28 aivGpNGSGKsnvldAi 44 
                  ++G+NG GKs +l A+
  MMETSP0890-20130614|1724_1 250 GLIGRNGKGKSTLLKAL 266
                 689*************9 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0051
                 EEEE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
  PF02463.14  26 ftaivGpNGSGKsnvldAi 44 
                   +i G+NG+GKs ++  i
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKII 587
                 5689**********99877 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 1.7e-06
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-.SEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka.dklvg 210
                 +LSgG+++ vala   A+  v+p+ l +lDe   +LD + v+++a+ +++ +    ++++s+++ +++++ +++  
  MMETSP0890-20130614|1724_1 666 SLSGGQRSRVALA---AVSYVEPHVL-ILDEPTNNLDLESVAALADCVRRFQ--GAVVCVSHDQAFVNEVaEECWV 735
                 7*******99998...6799999876.89********************998..889********99887344444 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.5e-05     0.025      22      43 ..     245     266 ..     235     268 .. 0.81
   2 !   14.9   0.1   3.3e-05     0.013       9      40 ..     555     584 ..     551     589 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.5e-05
   PF13555.1  22 kgkntlltGasGsGKSTllDAi 43 
                 +g+ + l+G++G GKSTll A+
  MMETSP0890-20130614|1724_1 245 RGRRYGLIGRNGKGKSTLLKAL 266
                 4567789************997 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.3e-05
   PF13555.1   9 WgtfdghtveidpkgkntlltGasGsGKSTll 40 
                 W  f+g ++ i +++   ++ G++G+GKSTl+
  MMETSP0890-20130614|1724_1 555 W-LFQGLDLGITSTS-RLVICGENGAGKSTLV 584
                 5.6777777777665.899***********98 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0    0.0006      0.23       3      33 ..     250     278 ..     248     329 .. 0.69
   2 !   14.6   0.0   8.4e-05     0.032       1      25 [.     569     593 ..     569     626 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0006
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefpkkklpeei 33 
                  ++G  g GKs+ll++l++++ +  ++pe  
  MMETSP0890-20130614|1724_1 250 GLIGRNGKGKSTLLKALACRSIE--NIPETC 278
                 689*****************999..333332 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 8.4e-05
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp 25 
                 ++v++G+ g+GKs+l++ ++ge  p
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIIIGELEP 593
                 79****************9999887 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0035       1.3      33      59 ..     244     270 ..     235     325 .. 0.84
   2 !   15.8   0.0   1.4e-05    0.0052      36      67 ..     568     599 ..     547     608 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0035
                 CTTSBEEEE-------HHHHHHH---- CS
  PF03193.11  33 lkdktsvlvGqSGvGKSsLinallpel 59 
                 ++++   l+G+ G GKS+L++al+ ++
  MMETSP0890-20130614|1724_1 244 VRGRRYGLIGRNGKGKSTLLKALACRS 270
                 55677779**************98765 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.4e-05
                 SBEEEE-------HHHHHHH--------S--- CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpeldlkvgevs 67 
                 +  v++G+ G+GKS+L++++++el+  +g+v 
  MMETSP0890-20130614|1724_1 568 SRLVICGENGAGKSTLVKIIIGELEPTIGQVI 599
                 5679********************99999985 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.029        11       9      46 ..     251     293 ..     249     418 .. 0.64
   2 !   14.8   0.0   5.6e-05     0.021       7     116 ..     570     713 ..     564     724 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.029
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae......karvvfveap 46 
                 ++G  G GK+tll+ la +  +e ++++      + +v + +  
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRS-IENIPETclihyvNQDVTLTTEE 293
                 68**************9874.44444446666663333333333 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.6e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae.....karvvfveapast......spkel.lqkllsalglpakg...................rltteellealqealrrrrt.............rlliiDEaqr.Lseealeelrsllddetg 116
                 lv++Ge G+GK+tl++ +  +l+  +   +     +ar++ v+  +s       +p ++ ++k+         g                   ++ + +l ++++  l   ++              +li+DE  + L  e +  l +++  + +
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKIIIGELEPTIG--QvirsgHARFAVVNQHHSDqvdlrlTPLDFmRTKFP--------GdgsyehdlklrshlascgcTGGNPDLQNTIASSLSGGQRsrvalaavsyvepHVLILDEPTNnLDLESVAALADCVR-RFQ 713
                 79*****************99854444..355888666666666555533333333333222222........223333334667777777777788888888888888888888888888888888888888888787777777777766.544 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.9       2.7     1e+03     204     286 ..     107     189 ..      52     228 .. 0.61
   2 !    9.2   0.0    0.0013      0.49      27      43 ..     251     280 ..     214     329 .. 0.75
   3 ?    3.3   0.0     0.078        30     372     399 ..     379     406 ..     367     422 .. 0.77
   4 !    8.5   0.0    0.0021      0.81      25      43 ..     565     596 ..     540     624 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.7
   PF13175.1 204 ieykildaykekkerkiikenllknlnflkdlfksiniyeidnriektlskildeneesikknqenleeeinkklqkllkkkl 286
                  ++k+ +  +++ e++ ik ++ ++ n      k+  + + d +    + + + e+e+++ ++   + ++ ++kl+++ +  l
  MMETSP0890-20130614|1724_1 107 VQIKFSEPSEKQIESNEIKVTTTTTTNAALWAAKNVWLEDEDYESGRPKDEVQAEMEQIKNRRGARKRNNAENKLSSIHRRAL 189
                 34444444444444444555555555555555555555555555555555666666555555555566666666666555555 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
   PF13175.1  27 iiGeNgsGKttILeal.............e 43 
                 +iG Ng GK+t+L+al             +
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALacrsienipetclI 280
                 8***************66666555544443 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.078
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelak 399
                  ll+DEP  hl++ +   l + L+e   
  MMETSP0890-20130614|1724_1 379 LLLLDEPTNHLSIAAVLWLARELEESEV 406
                 79*************9999999998655 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0021
   PF13175.1  25 n.....viiGeNgsGKttILeal........e 43 
                 +     vi GeNg+GK+t+ +++         
  MMETSP0890-20130614|1724_1 565 TstsrlVICGENGAGKSTLVKIIigeleptiG 596
                 4566669**************99665555553 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0015      0.57      28     117 ..     251     342 ..     234     414 .. 0.65
   2 !   11.4   0.2   0.00073      0.28      24     156 ..     567     710 ..     558     719 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0015
   PF13191.1  28 vtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.........lpysaiiqa.lrellrqlltelaaelggwreallaalgalipelegiiglqal 117
                 ++G  G GKS+Ll++    ++ +  + +++ +  ++ n          ++ ++      ++ r+ll +++++  +  e+l+a+ ++    ++    ++ l
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKA----LACRSIENIPETCLIHYVNqdvtltteeAEMQPWEIVvRADIERELLLAEKSKTPQIVEKLQAIDAD----SAPRRATTLL 342
                 79999**********....6677999999999999999999987777555555555445677888888888888888888887777....2222222222 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00073
   PF13191.1  24 p.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga................lipelegiiglqalvalldaalartr...rpklvlvlDD.lqwadresldlLealle 156
                 +  l++ G+ G GKS+L++ ++ ++    +++++++  ++             ++  +q+  +l+     ++ ++ + + +                  p+l+ +i ++    + ++ +  +    +p  vl+lD+    +d es+++L++  +
  MMETSP0890-20130614|1724_1 567 TsRLVICGENGAGKSTLVKIIIGELEPTIGQVIRSGHARFAVV---------NQHHSDQVDLRLTPLDFMRTKFPGDGSYEhdlklrshlascgctgGNPDLQNTIASSLSGGQRSRVALAAVsyvEP-HVLILDEpTNNLDLESVAALADCVR 710
                 33799*************9976666666666666665555555.........2222222222222222222222222222234443333333333333344444444432222222222222245444.6777776666666666666666555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0017      0.65      30      64 ..     243     277 ..     228     357 .. 0.78
   2 ?   -0.5   0.2       1.6   6.2e+02      86     133 ..     435     474 ..     367     481 .. 0.52
   3 !    8.4   0.0    0.0029       1.1      19      51 ..     550     585 ..     539     616 .. 0.87
   4 ?   -1.3   0.0       2.8   1.1e+03     167     188 ..     700     721 ..     673     722 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0017
   PF13481.1  30 lprgsltllaGapgtGKStlalqlaaavatGepfl 64 
                 l+rg  + l+G+ g GKStl+ +la++ ++  p +
  MMETSP0890-20130614|1724_1 243 LVRGRRYGLIGRNGKGKSTLLKALACRSIENIPET 277
                 56888999*****************9988655544 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.6
   PF13481.1  86 lrrrlsailaalddpenlllvslagvgslrltaddrrdalltadlerl 133
                  ++rl +  +++++ ++ ++ ++         a dr++a++ta++e+l
  MMETSP0890-20130614|1724_1 435 AAKRLTQSHGDYTTWSKRRAEKRL--------AWDREKARRTAEIEKL 474
                 233333333333332222222221........2244455555555555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0029
   PF13481.1  19 pppldwlvkg...llprgsltllaGapgtGKStlal 51 
                 +++ dwl +g    ++  s +++ G+ g+GKStl+ 
  MMETSP0890-20130614|1724_1 550 TTQADWLFQGldlGITSTSRLVICGENGAGKSTLVK 585
                 5678999998777788999***************86 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 2.8
   PF13481.1 167 aviaalerlakrtgaavllvhH 188
                 + +aal ++ +r   av++v H
  MMETSP0890-20130614|1724_1 700 ESVAALADCVRRFQGAVVCVSH 721
                 4578999999999999999999 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0019      0.71       5      21 ..     251     267 ..     247     292 .. 0.88
   2 !    9.5   0.0    0.0016      0.61       2      24 ..     569     591 ..     568     598 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0019
   PF05729.7   5 lqGeaGsGKTtLlqkla 21 
                 l G +G+GK+tLl+ la
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALA 267
                 78************998 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0016
   PF05729.7   2 tvilqGeaGsGKTtLlqklasaw 24 
                  +++ Ge+G GK+tL++ ++ ++
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIIIGEL 591
                 57999************998765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00065      0.25       2      33 ..     249     277 ..     248     330 .. 0.76
   2 ?    6.9   0.0     0.014       5.2       2      22 ..     570     590 ..     569     633 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00065
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT- CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgt 33 
                  +++Gr   GKStL++aL       ++++p t
  MMETSP0890-20130614|1724_1 249 YGLIGRNGKGKSTLLKALAC---RSIENIPET 277
                 589***************83...234444444 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.014
                 EEEE--TT---HHHHHHHHCS CS
  PF01926.18   2 vaivGrpNvGKStLinaLtge 22 
                 ++i G+  +GKStL++ ++ge
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKIIIGE 590
                 6899***********999864 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.02       7.6       3      26 ..     251     274 ..     250     300 .. 0.80
   2 !   11.6   0.0   0.00057      0.22       1      26 [.     570     595 ..     570     618 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.02
  PF00910.17   3 lyGpsgeGKStlakeLakallkkl 26 
                 l G++g GKStl k La +  +++
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRSIENI 274
                 679************986655554 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00057
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 ++++G++g GKStl+k ++ +l+ ++
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKIIIGELEPTI 595
                 589***************99998666 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0076       2.9       6      28 ..     251     273 ..     250     288 .. 0.85
   2 !    9.1   0.0    0.0016      0.61       5      23 ..     571     589 ..     569     609 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0076
   PF12846.2   6 ilGppGsGKSvllkklvlqllar 28 
                 ++G  G GKS+llk+l+++ +++
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRSIEN 273
                 589*************9998875 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0016
   PF12846.2   5 lilGppGsGKSvllkklvl 23 
                 +i+G+ G+GKS+l+k ++ 
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKIIIG 589
                 79*************9964 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.18        67       4      20 ..     251     267 ..     250     340 .. 0.81
   2 !   12.9   0.0   0.00018     0.067       3      44 ..     571     615 ..     570     632 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.18
   PF13671.1   4 lvGlpGsGKstlaerll 20 
                 l+G  G GKstl+++l+
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALA 267
                 58999*********996 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00018
   PF13671.1   3 llvGlpGsGKstlaerllkklg...yvrlsqdtlrkrlfgtdqqs 44 
                 +++G  G+GKstl++ ++ +l    + ++++  +r ++ ++++ +
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKIIIGELEptiGQVIRSGHARFAVVNQHHSD 615
                 78***************99999999*************9865543 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0028       1.1      24      40 ..     251     267 ..     249     337 .. 0.88
   2 !   13.6   0.2   0.00015     0.057      23      38 ..     571     586 ..     558     588 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0028
   PF13476.1  24 ItGpNGsGKTTildAic 40 
                 ++G NG GK+T+l+A+ 
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALA 267
                 58*************85 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00015
   PF13476.1  23 lItGpNGsGKTTildA 38 
                 +I+G+NG+GK+T+ + 
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKI 586
                 8***********9875 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.9       9.4   3.6e+03      39      68 ..     157     185 ..     140     207 .. 0.62
   2 !   18.2   1.5   3.8e-06    0.0015       6      72 ..     437     506 ..     434     517 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 9.4
   PF12848.2  39 eikkleefIdrfrakaskakqaqsrekale 68 
                 e++ ++e I+  r +a+k+  a+++   + 
  MMETSP0890-20130614|1724_1 157 EVQAEMEQIKNRR-GARKRNNAENKLSSIH 185
                 5555555555444.3566666655554444 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 3.8e-06
   PF12848.2   6 gklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdr.fraka..skakqaqsrekalekmer 72 
                 ++lt+ +G+Y+++ + ++e++ +  ++++++ +ei+kl+e+    fr+++  s+ k+ + +e++ +k+  
  MMETSP0890-20130614|1724_1 437 KRLTQSHGDYTTWSKRRAEKRLAWDREKARRTAEIEKLREYAGHgFRYGGsdSQIKKMKMKERQADKLAA 506
                 6889999**********************************96426664445999999999999999854 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2    0.0065       2.5       2      32 ..     249     287 ..     248     523 .. 0.79
   2 ?    6.5   0.0     0.033        13       2      18 ..     570     586 ..     569     632 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0065
                 E--B--TT---HHHHHHHHHH.........STEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaer.........lglpvlsldd 32 
                 ++++G  G GKsTl k+La r         l + +++ d 
  MMETSP0890-20130614|1724_1 249 YGLIGRNGKGKSTLLKALACRsienipetcL-IHYVNQDV 287
                 7899**************8762222222211.33445444 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.033
                 E--B--TT---HHHHHH CS
   PF13207.1   2 iaitGppGsGKsTlake 18 
                  +i+G  G+GKsTl k 
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKI 586
                 689***********986 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.026       9.8       4      39 ..     250     284 ..     247     332 .. 0.67
   2 !    9.3   0.0     0.002      0.75       2      24 ..     569     591 ..     568     620 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.026
                 EEE-------HHHHHHHHHHHHH-------EEE-SS CS
   PF03205.9   4 avvGpkdsGKTtlieklvnklkergyrvavvkhldh 39 
                  ++G  + GK+tl++ l+    e+  + +++ h   
  MMETSP0890-20130614|1724_1 250 GLIGRNGKGKSTLLKALACRSIENIPE-TCLIHYVN 284
                 689**************9888854444.33555444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.002
                 EEEEE-------HHHHHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnkl 24 
                 +++++G  + GK+tl+++++ +l
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIIIGEL 591
                 689***************99776 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.019       7.1      44      61 ..     252     269 ..     230     277 .. 0.87
   2 !    9.3   0.0    0.0017      0.64      38      60 ..     567     589 ..     560     594 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.019
  PF01580.13  44 aGatgsGKStflrtLils 61 
                 +G++g GKSt l++L + 
  MMETSP0890-20130614|1724_1 252 IGRNGKGKSTLLKALACR 269
                 7**************996 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0017
  PF01580.13  38 aphlLiaGatgsGKStflrtLil 60 
                   +l+i+G++g+GKSt ++ +i 
  MMETSP0890-20130614|1724_1 567 TSRLVICGENGAGKSTLVKIIIG 589
                 4589*************998885 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.058        22       3      22 ..     251     270 ..     249     323 .. 0.79
   2 !    8.6   0.0    0.0048       1.8       2      25 ..     571     594 ..     570     627 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.058
                 EE-------HHHHHHHHHHC CS
  PF00004.24   3 lyGppGtGKTllakavakel 22 
                 l+G  G GK++l ka+a  +
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRS 270
                 89**************9774 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0048
                 EEE-------HHHHHHHHHHCTHE CS
  PF00004.24   2 llyGppGtGKTllakavakelgve 25 
                 +++G  G GK++l+k ++ el+ +
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKIIIGELEPT 594
                 689*****************9633 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0021      0.79      18      54 ..     235     271 ..     227     280 .. 0.86
   2 ?   -3.0   0.1       5.8   2.2e+03     197     229 ..     401     433 ..     389     463 .. 0.66
   3 ?    5.9   0.0     0.011       4.1      28      53 ..     566     591 ..     548     600 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0021
                 HHHHHGGG----EEE--B-------HHHHHH---HHH CS
  PF03308.11  18 llrkilpkaGralvvGltGvPGaGkstlveklikelr 54 
                 ll++ + +  r ++ Gl G  G Gkstl+++l+++ +
  MMETSP0890-20130614|1724_1 235 LLDQASISLVRGRRYGLIGRNGKGKSTLLKALACRSI 271
                 67777777788999******************98765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.8
                 --SBTTB--EEEE-BTTTTB--HHHHHHHHHHH CS
  PF03308.11 197 eekekeWrppvlktsavegeGidelvdaieehr 229
                  e+++ W+ +++ +++     +d++ + + +  
  MMETSP0890-20130614|1724_1 401 LEESEVWQDRIIVIVSHDRAFLDQVCTDVLHIS 433
                 445778999999999999888888888776543 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.011
                 --EEE--B-------HHHHHH---HH CS
  PF03308.11  28 ralvvGltGvPGaGkstlveklikel 53 
                  + ++ + G  GaGkstlv+ +i el
  MMETSP0890-20130614|1724_1 566 STSRLVICGENGAGKSTLVKIIIGEL 591
                 5678889************9998877 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       9.7   3.7e+03      42      42 ..     138     138 ..      95     196 .. 0.53
   2 ?    6.2   0.0     0.019       7.3       3      23 ..     251     271 ..     250     331 .. 0.90
   3 ?    7.0   0.0     0.011       4.1       1      21 [.     570     590 ..     570     618 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 9.7
                 E CS
  PF00350.18  42 e 42 
                  
  MMETSP0890-20130614|1724_1 138 A 138
                 2 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.019
                 EE--TT---HHHHHHH----- CS
  PF00350.18   3 vvGsqSaGKSSllnaLlgedi 23 
                 ++G   +GKS+ll+aL  + i
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRSI 271
                 799999**********98775 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.011
                 EEEE--TT---HHHHHHH--- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlge 21 
                 ++++G+  aGKS+l++ ++ge
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKIIIGE 590
                 589****************98 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.037        14      58      76 ..     251     269 ..     245     287 .. 0.88
   2 !    7.9   0.0    0.0029       1.1      55      80 ..     569     594 ..     563     611 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.037
   PF05673.8  58 LwGarGtGKSslvkallne 76 
                 L+G  G GKS+l+kal  +
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACR 269
                 89*************9755 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0029
   PF05673.8  55 nvLLwGarGtGKSslvkallneyaee 80 
                  +++ G+ G+GKS+lvk ++ e++ +
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIIIGELEPT 594
                 56789*************99988765 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0       0.2        75       3      21 ..     250     268 ..     248     274 .. 0.83
   2 ?    9.6   0.1    0.0016      0.62       1      24 [.     569     592 ..     569     601 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.2
                 EEE-------HHHHHHHHH CS
  PF03266.10   3 fiTGepgvGKtTlvkkvle 21 
                  + G+ g GK+Tl+k ++ 
  MMETSP0890-20130614|1724_1 250 GLIGRNGKGKSTLLKALAC 268
                 5779**********99875 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0016
                 EEEEE-------HHHHHHHHHH-. CS
  PF03266.10   1 rvfiTGepgvGKtTlvkkvlellk 24 
                 r++i Ge g GK+Tlvk ++ +l+
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIIIGELE 592
                 579****************99986 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.51   1.9e+02      30      76 ..     356     389 ..     344     394 .. 0.63
   2 ?    9.7   0.0    0.0018      0.69      31      89 ..     665     710 ..     652     711 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.51
   PF13558.1  30 tgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFskl 76 
                  ++lSGG +   v + laaAl            +++l++LDE+++ l
  MMETSP0890-20130614|1724_1 356 LKALSGGWR---VRTFLAAALF----------ARPDLLLLDEPTNHL 389
                 555555555...4444443332..........257788888887765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0018
   PF13558.1  31 gtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                 ++lSGG++    + + +aA++++         ++  ++LDE++++lD e++a+l++ +r
  MMETSP0890-20130614|1724_1 665 SSLSGGQR----SRVALAAVSYV---------EPHVLILDEPTNNLDLESVAALADCVR 710
                 56777777....22233344433.........3569****************9998765 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0028       1.1       4      39 ..     251     287 ..     248     328 .. 0.71
   2 ?    2.7   0.1      0.25        96       2      17 ..     570     585 ..     569     603 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0028
   PF13521.1   4 itGgpstGKTtlleaLaargypvvpEva.revleekl 39 
                 ++G  + GK+tll+aLa r ++ +pE+    ++++ +
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRSIENIPETClIHYVNQDV 287
                 789999***********99999998864134555544 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.25
   PF13521.1   2 ivitGgpstGKTtlle 17 
                  vi G  ++GK+tl++
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVK 585
                 699***********97 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.3   8.9e+02      20      36 ..     251     267 ..     239     273 .. 0.85
   2 ?   10.8   0.0   0.00065      0.25      18      63 ..     570     619 ..     556     641 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.3
  PF02367.12  20 LsGdlGaGKTtlvkgla 36 
                 L G  G GK tl+k+la
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALA 267
                 78999*********997 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00065
  PF02367.12  18 vlLsGdlGaGKTtlvkglakglgvkg..evtS..Ptftlvevyeegklkl 63 
                 +++ G+ GaGK tlvk ++ +l+ +    ++S    f++v++++ +++ l
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKIIIGELEPTIgqVIRSghARFAVVNQHHSDQVDL 619
                 6789******************7665546777334699999999876543 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.044        17       6      76 ..     250     322 ..     245     339 .. 0.64
   2 ?    4.9   0.0     0.053        20       5      27 ..     570     592 ..     566     628 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.044
   PF13173.1   6 vitGpRrvGKttllkqlakell....keesilyinlddeelrkladpellelfleklkekkkylflDEiqevpew 76 
                  ++G  + GK+tllk la + +    ++  i y+n d   + ++a+ +  e++++ +  +++ l+l E  + p++
  MMETSP0890-20130614|1724_1 250 GLIGRNGKGKSTLLKALACRSIenipETCLIHYVNQDVTLTTEEAEMQPWEIVVRAD-IERE-LLLAEKSKTPQI 322
                 57788889*********9998877766666777777765554444432224444432.1222.555555555555 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.053
   PF13173.1   5 lvitGpRrvGKttllkqlakell 27 
                 lvi G  ++GK+tl+k ++ el 
  MMETSP0890-20130614|1724_1 570 LVICGENGAGKSTLVKIIIGELE 592
                 79*************99987765 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.053        20       9      35 ..     251     277 ..     249     307 .. 0.72
   2 ?    6.2   0.0     0.011       4.1       6      25 ..     569     588 ..     564     616 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.053
  PF00735.13   9 vvGesglGkttlintlfetdlieeeee 35 
                 ++G++g Gk+tl+++l  +++ +  e+
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACRSIENIPET 277
                 58**************99988776544 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.011
  PF00735.13   6 tlmvvGesglGkttlintlf 25 
                  l+++Ge+g Gk+tl++ ++
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIII 588
                 589*************9765 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.9      0.76   2.9e+02     132     184 ..     136     199 ..      79     227 .. 0.52
   2 ?    4.1   0.0     0.081        31      24      48 ..     247     271 ..     240     280 .. 0.86
   3 ?    9.4   0.1     0.002      0.75      23      47 ..     567     591 ..     557     599 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.76
  PF01935.12 132 a......keekeklssdepveklleelk.....kekeelrklknqairrlldklerllrkggsf 184
                        + e+e++ s +p  +++ e++     +++++++++ n++ +   ++l++l ++++++
  MMETSP0890-20130614|1724_1 136 LwaaknvWLEDEDYESGRPKDEVQAEMEqiknrRGARKRNNAENKLSSIHRRALQHLELRRELR 199
                 0112223456666666666666666666444443344444444444444444555555554444 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.081
  PF01935.12  24 rHlAilgsTGsGKSntvavLleell 48 
                 r+ + +g+ G GKS++ + L  + +
  MMETSP0890-20130614|1724_1 247 RRYGLIGRNGKGKSTLLKALACRSI 271
                 78899**************998876 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.002
  PF01935.12  23 trHlAilgsTGsGKSntvavLleel 47 
                 t +l i g+ G+GKS++v++++ el
  MMETSP0890-20130614|1724_1 567 TSRLVICGENGAGKSTLVKIIIGEL 591
                 6678899***************887 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0026      0.99      10      44 ..     241     275 ..     234     455 .. 0.88
   2 ?    0.8   0.1      0.69   2.6e+02      16      36 ..     568     588 ..     560     604 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0026
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  10 fPivqGqttlipGafgcGktvisqslsknsnsdai 44 
                 +++v+G + +++G  g Gk+++++ l+  s +++ 
  MMETSP0890-20130614|1724_1 241 ISLVRGRRYGLIGRNGKGKSTLLKALACRSIENIP 275
                 689***********************998866655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.69
                 xxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  16 qttlipGafgcGktvisqsls 36 
                  + +i G+ g+Gk+++++ ++
  MMETSP0890-20130614|1724_1 568 SRLVICGENGAGKSTLVKIII 588
                 6899************98776 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.053        20       3      60 ..     251     303 ..     250     341 .. 0.62
   2 ?    5.5   0.0     0.048        18       2      22 ..     571     591 ..     570     626 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.053
   PF13238.1   3 itGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedkldell 60 
                 + G  G GK+Tl+k+La r     +++++e  l+ +v+++  t   +e+ +  +++++
  MMETSP0890-20130614|1724_1 251 LIGRNGKGKSTLLKALACR----SIENIPETCLIHYVNQD-VTLTTEEAEMQPWEIVV 303
                 6678889*********988....56666666666666665.44444444444444444 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.048
   PF13238.1   2 litGtpGvGKtTlakeLaerl 22 
                 +i+G  G+GK+Tl k++  +l
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKIIIGEL 591
                 699***********9984444 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.057        22       4      27 ..     247     270 ..     245     297 .. 0.76
   2 ?    5.3   0.0     0.028        11       5      29 ..     569     593 ..     565     617 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.057
                 EEEEEEESTT---HHHHHHHHHHC CS
  PF00009.22   4 rnigiighvDhGKtTltdallyka 27 
                 r  g+ig    GK+Tl++al +++
  MMETSP0890-20130614|1724_1 247 RRYGLIGRNGKGKSTLLKALACRS 270
                 5678999999**********9765 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.028
                 EEEEEESTT---HHHHHHHHHHCCC CS
  PF00009.22   5 nigiighvDhGKtTltdallykaga 29 
                  ++i+g   +GK+Tl++ ++ +++ 
  MMETSP0890-20130614|1724_1 569 RLVICGENGAGKSTLVKIIIGELEP 593
                 689**************99987765 PP

>> PF02456.10  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0013       0.5      93     140 ..     252     301 ..     236     307 .. 0.72
   2 ?   -0.5   0.1      0.86   3.3e+02      91     109 ..     571     589 ..     562     599 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
  PF02456.10  93 ygptgsGksqllrnllsakliePipetvif.itPekdmippe..eltaWel 140
                 +g  g Gks ll++ l+++ ie ipet +   + +  ++++e  e++ We+
  MMETSP0890-20130614|1724_1 252 IGRNGKGKSTLLKA-LACRSIENIPETCLIhYVNQDVTLTTEeaEMQPWEI 301
                 6889*********5.69**********754134444445444115566765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.86
  PF02456.10  91 vvygptgsGksqllrnlls 109
                 v+ g  g+Gks l++ +++
  MMETSP0890-20130614|1724_1 571 VICGENGAGKSTLVKIIIG 589
                 789************7765 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.088        33       7      45 ..     244     278 ..     238     286 .. 0.70
   2 ?    5.6   0.1     0.031        12      11      32 ..     568     588 ..     562     612 .. 0.79
   3 ?   -0.5   0.1       2.4   9.1e+02      29      63 ..     703     738 ..     701     750 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.088
   PF13245.1   7 lagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsv 45 
                 ++  +   + G  G GK+t+l a++++ +    ++ ++ +
  MMETSP0890-20130614|1724_1 244 VR-GRRYGLIGRNGKGKSTLLKALACRSI----ENiPETC 278
                 55.5666678999*****88887777776....3335555 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.031
   PF13245.1  11 pllvvtGgPGtGKTttlaaiia 32 
                 + lv+ G  G+GK+ tl++ii 
  MMETSP0890-20130614|1724_1 568 SRLVICGENGAGKS-TLVKIII 588
                 55677*********.8888875 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 2.4
   PF13245.1  29 aiiaallaarekpgrsvllvaptgraakrlserl....l 63 
                 a+ a++++  +     v++v+   +++ +++e +     
  MMETSP0890-20130614|1724_1 703 AALADCVR--RF-QGAVVCVSHDQAFVNEVAEECwvvaK 738
                 56677773..22.3359999*********9998866653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.76
# Mc/sec: 2393.20
//
Query:       MMETSP0890-20130614|1729_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-17   62.7   0.0    3.2e-17   62.0   0.0    1.4  1  PF03937.11 Flavinator of succinate dehydrogenase


Domain annotation for each model (and alignments):
>> PF03937.11  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.4e-21   3.2e-17       1      50 [.      63     112 ..      63     113 .. 0.98

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 2.4e-21
                 HHS.----HHHHHH---HHHHHHHH--HHHHHHHHHHHTS-HHHHHHHH- CS
  PF03937.11   1 wrsrrRGmlElDllLgrFadkhletlseeeldaferLLdleDpdLfdwlt 50 
                 +rs++RG lE DllLg+Fa+++++t++e+e++++e++L++e  d+f+++t
  MMETSP0890-20130614|1729_1  63 YRSKQRGWLEVDLLLGTFATQYVSTFNEKECNEYEAILNCETIDIFNYIT 112
                 9***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 619.06
//
Query:       MMETSP0890-20130614|1733_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-23   82.0   6.6    2.5e-23   81.8   4.6    1.0  1  PF05811.8 Eukaryotic protein of unknown function (DUF842)


Domain annotation for each model (and alignments):
>> PF05811.8  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   4.6   1.8e-27   2.5e-23       4     129 ..       8     130 ..       5     132 .. 0.93

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.8e-27
   PF05811.8   4 qeevqsavdsmledldreilrklQkkmfkCaaeCfedkkasleevenCverCsvplakaqqlveselekfqdrLqrclmeCqdklkdklasnknesdaakelerCvnkcvdkhvkllpelvkrlkk 129
                 q+++q+ vd m++d+d+++lr   kk f   a+C+ d++ s+++ + C++r s p +kaq ++++el++fqdrLqr++  Cqd++kdk  s++ + ++   +++C  ++++kh+k+lp++ kr+ +
  MMETSP0890-20130614|1733_1   8 QKKLQTGVDAMVKDIDSKYLRPRRKKAFLDMAACC-DSSPSQQAYQACIQRASLPEEKAQVAIKEELNHFQDRLQRAAAACQDEVKDKSISDPDRAQL--AFNKCLCSALEKHIKMLPTMQKRIFA 130
                 7899*******************************.999999*********************************************98666666555..79********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 446.44
//
Query:       MMETSP0890-20130614|1731_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-20   71.2   0.0    1.2e-19   70.8   0.0    1.2  1  PF05050.7 Methyltransferase FkbM domain
      4e-05   24.0   0.0    7.7e-05   23.1   0.0    1.7  2  PF12847.2 Methyltransferase domain
     0.0037   16.2   0.0     0.0052   15.7   0.0    1.2  1  PF05575.6 Vibrio cholerae RfbT protein
  ------ inclusion threshold ------
       0.06   12.1   0.0      0.088   11.5   0.0    1.2  1  PF05219.7 DREV methyltransferase


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   3.5e-23   1.2e-19       1     159 [.      70     224 ..      70     254 .. 0.72

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 3.5e-23
   PF05050.7   1 DvGAniG.wssalyslaakcggggrviafEPnpnnlaklaanltlalgdddglvelivaavgd...gsallsavgdssgssss......svledrnts....tievpvvtLDdfleenisridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfikplfeeildfL 159
                 DvGAn+G  s+ l   +    + ++v+afE++ + ++ l++   l +++ +g ++ + +av++   +  + +a+ ++ + s+          +    +      +v +v+LD+++e    ++ ++KiD+EG++l vLeg+e++l++ +  i+ +E+++ +         ++  L
  MMETSP0890-20130614|1731_1  70 DVGANVGeVSTLLGGIF----QDRKVYAFEAQEHVYEVLRQE--LRAHNATGRFQTVFHAVSNiggNLVTMYAPARKANRSTFtgsglaGRAT----GemvaINSVTTVRLDEWCESLNIKPLFIKIDTEGFDLFVLEGMERLLQNQDLEIFiFEFNWSQ---------WRLTL 224
                 9******7555555443....4999*********99999999..9999999998888889988855333333333333333335544442223....25555************999933456*********************9999999889986542.........33333 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   1.3e+04      65      81 ..      37      52 ..      27      61 .. 0.64
   2 !   23.1   0.0   2.3e-08   7.7e-05       3      49 ..      66     112 ..      63     207 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.9
   PF12847.2 65 lsllerfDavllkgltl 81
                + + +++D+++l++  +
  MMETSP0890-20130614|1731_1 37 QYQAHNIDIIVLNN-FG 52
                44556688888877.44 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.3e-08
   PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksld 49 
                 + +lD+G+++G +s  l   +++ kv++++++e+ +e++r+ +++++
  MMETSP0890-20130614|1731_1  66 RALLDVGANVGEVSTLLGGIFQDRKVYAFEAQEHVYEVLRQELRAHN 112
                 456*************************************9884433 PP

>> PF05575.6  Vibrio cholerae RfbT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06    0.0052      79     247 ..      64     234 ..      37     252 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-06
   PF05575.6  79 hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnplvefhhfgcaigenegenifevyefdnrvsslyfkkntdiadkvk......nsqvlvrk...lssldisptnsvvikidaegaeieilnqiyeftekhngieyyicfefamghiqrsnrtfdeifnii 247
                 +  + +d+ganvg +  +      + k+ a e    + + +r +++  n    f+ +  a+  n g n++ +y    + +   f     +a +        ns   vr      sl+i   + + ikid+eg ++ +l+ +  + +  + +e +i fef   + + + r f   ++ii
  MMETSP0890-20130614|1731_1  64 KSRALLDVGANVGEVSTLLGGIFQDRKVYAFEAQEHVYEVLRQELRAHNATGRFQTVFHAVS-NIGGNLVTMYAPARKANRSTFTGS-GLAGRATgemvaiNSVTTVRLdewCESLNI---KPLFIKIDTEGFDLFVLEGMERLLQ-NQDLEIFI-FEFNWSQWRLTLRQFGAQLKII 234
                 556789**************99999******************************9999986.78899999*998877766666543.344333300001144444543111334444...4579*************99877765.56788876.9999999888888888887777 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.6e-05     0.088      94     133 ..      64     105 ..      45     120 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.6e-05
   PF05219.7  94 edkklldlGaGdGeitkrvaptfee..vyatelsetmrdrlk 133
                 +++ lld+Ga  Ge++  +   f++  vya e+ e++ + l+
  MMETSP0890-20130614|1731_1  64 KSRALLDVGANVGEVSTLLGGIFQDrkVYAFEAQEHVYEVLR 105
                 6788*******************9888******998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 909.97
//
Query:       MMETSP0890-20130614|1732_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-11   43.1   6.8    5.5e-11   41.8   4.7    1.7  1  PF13920.1 Zinc finger, C3HC4 type (RING finger)
    6.5e-05   22.5   4.4    6.5e-05   22.5   3.0    1.8  2  PF13923.1 Zinc finger, C3HC4 type (RING finger)
    0.00085   18.8   0.4       0.52    9.9   0.1    3.8  3  PF08239.6 Bacterial SH3 domain
     0.0041   16.7   7.0      0.011   15.3   4.9    1.8  1  PF13639.1 Ring finger domain
     0.0083   15.6   0.2      0.026   14.0   0.1    1.9  1  PF06827.9 Zinc finger found in FPG and IleRS


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   4.7     2e-14   5.5e-11       2      50 .]     376     426 ..     375     426 .. 0.92

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 2e-14
   PF13920.1   2 kktCvvClereadvlllp..CgHlclCeeCaerllkrkkkCpiCrspiesv 50 
                 +  CvvCl+ +++ ++++   gH+++C +Ca++l+ r  +Cp+Cr +ie+v
  MMETSP0890-20130614|1732_1 376 DALCVVCLSARRNSTFVHgeTGHIACCLSCARALKARGDTCPVCRMTIERV 426
                 678********9999997557*************99************986 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         5   1.4e+04      16      22 ..     214     220 ..     209     221 .. 0.72
   2 !   22.5   3.0   2.4e-08   6.5e-05       3      46 .]     377     421 ..     375     421 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 5
   PF13923.1  16 viltpCg 22 
                 v + pCg
  MMETSP0890-20130614|1732_1 214 VHIVPCG 220
                 4568998 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.4e-08
   PF13923.1   3 fsCpiCleelen.pviltpCgHl.yCkkCieqwlekskkkCPiCrn 46 
                   C++Cl+  +n ++++   gH  +C +C+  +  +   +CP+Cr+
  MMETSP0890-20130614|1732_1 377 ALCVVCLSARRNsTFVHGETGHIaCCLSCARALKAR-GDTCPVCRM 421
                 67********9977778899**9899***9998888.9******96 PP

>> PF08239.6  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00019      0.52       5      31 ..      44      70 ..      43      95 .. 0.93
   2 ?    0.3   0.0      0.18   4.9e+02       5      30 ..     125     150 ..     125     170 .. 0.86
   3 ?    3.2   0.0     0.022        61       5      30 ..     203     228 ..     202     230 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00019
   PF08239.6  5 VRsgpgtsskvigqlpkGekvtvlgee 31
                +R+ p+t+s+++ +++ G+++ v +e 
  MMETSP0890-20130614|1732_1 44 IRERPNTESEIVETFSLGTSLRVDEEA 70
                7********************999875 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.18
   PF08239.6   5 VRsgpgtsskvigqlpkGekvtvlge 30 
                 VR+g +  s+ i +l k ++++v ++
  MMETSP0890-20130614|1732_1 125 VREGLELASPHIYTLAKDAVFQVYER 150
                 89999999999**********99876 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.022
   PF08239.6   5 VRsgpgtsskvigqlpkGekvtvlge 30 
                 VR++ + ss ++  +p G++v v ++
  MMETSP0890-20130614|1732_1 203 VRETVELSSAIVHIVPCGDEVIVDEK 228
                 89999****************99887 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   4.9     4e-06     0.011       3      44 ..     379     420 ..     377     422 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-06
   PF13639.1   3 CaiCldelsegeevvrlpCgHv.fHeeCldewlrssnsCPlCr 44 
                 C++Cl+   +++++v  + gH+ ++ +C +++  + ++CP+Cr
  MMETSP0890-20130614|1732_1 379 CVVCLSAR-RNSTFVHGETGHIaCCLSCARALKARGDTCPVCR 420
                 *******8.578888888***956689999999999******9 PP

>> PF06827.9  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   9.4e-06     0.026       1      16 [.     413     428 ..     413     430 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.4e-06
   PF06827.9   1 GekCpRCwnyiervgq 16 
                 G+ Cp+C+++ierv q
  MMETSP0890-20130614|1732_1 413 GDTCPVCRMTIERVIQ 428
                 789***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1568.52
//
Query:       MMETSP0890-20130614|1734_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1055  (0.077165); expected 273.4 (0.02)
Passed bias filter:                      544  (0.0397894); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 916.87
//
Query:       MMETSP0890-20130614|1736_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 215.97
//
Query:       MMETSP0890-20130614|1735_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-70  232.1   0.0    5.5e-22   77.0   0.0    3.2  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.5e-50  167.1   0.0    3.8e-16   58.7   0.0    3.2  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.2e-26   92.1   0.0    1.1e-08   34.6   0.0    3.4  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.6e-11   41.9   0.2      0.067   12.8   0.0    3.5  3  PF11608.3  Limkain b1
    8.2e-10   38.3   3.8     0.0044   16.7   0.0    3.8  4  PF08777.6  RNA binding motif
    7.1e-05   21.9   0.1        2.5    7.1   0.0    3.4  3  PF13645.1  L,D-transpeptidase catalytic domain
    0.00016   21.7   0.1        7.9    6.6   0.0    3.3  3  PF11565.3  Alpha helical Porin B
  ------ inclusion threshold ------
      0.063   12.5   0.0         36    3.5   0.0    3.1  3  PF08442.5  ATP-grasp domain
      0.096   12.2   3.1         29    4.3   0.0    3.4  3  PF04604.8  Type-A lantibiotic
       0.38   10.2   2.4         24    4.4   0.0    3.7  5  PF02306.10 Major spike protein (G protein)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0     2e-24   2.8e-21       1      69 [.      63     132 ..      63     133 .. 0.99
   2 !   76.9   0.0   4.4e-25     6e-22       1      69 [.     177     246 ..     177     247 .. 0.99
   3 !   77.0   0.0     4e-25   5.5e-22       1      70 []     296     366 ..     296     366 .. 0.99

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 2e-24
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 ++V+nLp++v+++ Lk++F++ G ++ ++++++  tgrskg+++VeFe+ ++a +A+++ln  +l+gr++
  MMETSP0890-20130614|1735_1  63 IYVSNLPWSVNWQHLKDYFRQAGNVVYASVMTEdGTGRSKGCGIVEFETVDEALHAINTLNDSELDGRRI 132
                 8*******************************************************************97 PP

  == domain 2    score: 76.9 bits;  conditional E-value: 4.4e-25
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +fVgnL +++++++Lk++F+++G ++  +++++  tgrskg+++VeFe++e+a kA+e+l+  +l+gr++
  MMETSP0890-20130614|1735_1 177 VFVGNLAWSTSWQDLKDFFRQVGNVVYSSIMTEdDTGRSKGCGIVEFETPEEALKAIETLHDAELDGRRI 246
                 8*******************************************************************97 PP

  == domain 3    score: 77.0 bits;  conditional E-value: 4e-25
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 ++VgnL +++++++Lk++F++ G ++ ++++++  tgrskg+++VeFe++e+a +A+e+l+  +l+gr+++
  MMETSP0890-20130614|1735_1 296 IYVGNLAWSTSWQDLKDYFRQAGNVVYASVMTEdDTGRSKGCGIVEFETSEQAVQAIESLHDSELDGRRIT 366
                 8*******************************************************************985 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.9e-16   2.6e-13       1      68 [.      63     132 ..      63     132 .. 0.96
   2 !   58.7   0.0   2.8e-19   3.8e-16       1      68 [.     177     246 ..     177     246 .. 0.98
   3 !   55.2   0.0   3.5e-18   4.8e-15       1      68 [.     296     365 ..     296     366 .. 0.98

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.9e-16
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +yv++lp+sv+ + l++ f+++g+v   +++ +   gr++g ++vefe+ ++A  a++ ln   l+gr i
  MMETSP0890-20130614|1735_1  63 IYVSNLPWSVNWQHLKDYFRQAGNVVYASVMTEDGtGRSKGCGIVEFETVDEALHAINTLNdSELDGRRI 132
                 8******************************98767************************99******87 PP

  == domain 2    score: 58.7 bits;  conditional E-value: 2.8e-19
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 ++v++l +s++ +dl++ff++ g+v   +i+ + d gr++g ++vefe++e+A ka++ l+   l+gr i
  MMETSP0890-20130614|1735_1 177 VFVGNLAWSTSWQDLKDFFRQVGNVVYSSIMTEDDtGRSKGCGIVEFETPEEALKAIETLHdAELDGRRI 246
                 89*********************************************************999******87 PP

  == domain 3    score: 55.2 bits;  conditional E-value: 3.5e-18
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 +yv++l +s++ +dl++ f+++g+v   +++ + d gr++g ++vefe+ e+A +a++ l+   l+gr i
  MMETSP0890-20130614|1735_1 296 IYVGNLAWSTSWQDLKDYFRQAGNVVYASVMTEDDtGRSKGCGIVEFETSEQAVQAIESLHdSELDGRRI 365
                 8**********************************************************998******98 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.5e-09   3.4e-06       1      51 [.      77     132 ..      77     135 .. 0.86
   2 !   34.6   0.0   8.3e-12   1.1e-08       1      53 [.     191     248 ..     191     249 .. 0.93
   3 !   27.0   0.0   1.9e-09   2.6e-06       1      53 [.     310     367 ..     310     369 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.5e-09
   PF13893.1   1 LyklfskfGkver.ikifrkk....ggqAfvefdtveaArkakeylngvklygktL 51 
                 L+++f + G+v+   ++ +++    +g++ vef+tv++A +a+++ln   l+g+++
  MMETSP0890-20130614|1735_1  77 LKDYFRQAGNVVYaSVMTEDGtgrsKGCGIVEFETVDEALHAINTLNDSELDGRRI 132
                 67788888998875666666689888****************************98 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 8.3e-12
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 L+++f ++G+v+   i+ +      +g++ vef+t+e+A ka+e+l+ + l+g+++ v
  MMETSP0890-20130614|1735_1 191 LKDFFRQVGNVVYSSIMTEDdtgrsKGCGIVEFETPEEALKAIETLHDAELDGRRIIV 248
                 7899*******99999988889*999****************************9966 PP

  == domain 3    score: 27.0 bits;  conditional E-value: 1.9e-09
   PF13893.1   1 LyklfskfGkver.ikifrkk....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 L+++f + G+v+   ++ ++     +g++ vef+t e+A +a+e+l+   l+g+++ v
  MMETSP0890-20130614|1735_1 310 LKDYFRQAGNVVYaSVMTEDDtgrsKGCGIVEFETSEQAVQAIESLHDSELDGRRITV 367
                 56788888888774555444478888******************************98 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.1e-05      0.07       5      79 ..      63     142 ..      60     149 .. 0.85
   2 !   12.5   0.0     6e-05     0.082      38      80 ..     215     257 ..     177     266 .. 0.89
   3 !   12.8   0.0   4.9e-05     0.067      38      79 ..     334     375 ..     296     387 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.1e-05
   PF11608.3   5 lfvsnLPvnkdkkaiknRLrrLsdncGGkvl.....svsgksavlrfanqeaaeRalkRleneDvfGnritvsespkere 79 
                 ++vsnLP + + + +k+  r+  + +   v+     + s+++ ++ f   + a  a   l++ +  G+ri v+e  +++e
  MMETSP0890-20130614|1735_1  63 IYVSNLPWSVNWQHLKDYFRQAGNVVYASVMtedgtGRSKGCGIVEFETVDEALHAINTLNDSELDGRRIGVREDREDKE 142
                 799999999999999999999999999999833222356789*******************************9966655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6e-05
   PF11608.3  38 sgksavlrfanqeaaeRalkRleneDvfGnritvsespkeref 80 
                 s+++ ++ f  +e a +a   l + +  G+ri+v+e  +++++
  MMETSP0890-20130614|1735_1 215 SKGCGIVEFETPEEALKAIETLHDAELDGRRIIVREDREDKDV 257
                 67899*******************************9666665 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 4.9e-05
   PF11608.3  38 sgksavlrfanqeaaeRalkRleneDvfGnritvsespkere 79 
                 s+++ ++ f  +e a +a   l + +  G+ritv+e  ++++
  MMETSP0890-20130614|1735_1 334 SKGCGIVEFETSEQAVQAIESLHDSELDGRRITVREDREDKD 375
                 6789********************************966555 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       3.3   4.6e+03      50      68 ..      18      36 ..      11      49 .. 0.55
   2 !    6.2   0.0     0.006       8.2      16      61 ..      75     126 ..      65     141 .. 0.79
   3 !   16.7   0.0   3.2e-06    0.0044      11      61 ..     184     241 ..     177     256 .. 0.78
   4 !   14.2   0.0   1.9e-05     0.026      12      61 ..     304     359 ..     297     388 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.3
                HHHH---TTTT----B-TT CS
   PF08777.6 50 akkalekateanegklkik 68
                a+k   k++e +e+  +++
  MMETSP0890-20130614|1735_1 18 ARKTATKVQEEEEDTPMQE 36
                5555555555533333333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.006
                 HHHHHHT-----EEEE--------......--EEESS-..HHHH---TTTT- CS
   PF08777.6  16 edikelfsklgevkyvdfkegdke......gevrFkedeaakkalekatean 61 
                 +++k+ f++ g+v y  +   d +      g+v F++ ++a +a++ +++++
  MMETSP0890-20130614|1735_1  75 QHLKDYFRQAGNVVYASVMTEDGTgrskgcGIVEFETVDEALHAINTLNDSE 126
                 789************9988777662223335899****99*99999999883 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 3.2e-06
                 SS--HHHHHHHT-----EEEE--------......--EEESS-..HHHH---TTTT.- CS
   PF08777.6  11 kelsredikelfsklgevkyvdfkegdke......gevrFkedeaakkalekatea.n 61 
                   +s +d+k++f++ g+v y  +   d +      g+v F+++e+a ka+e + +a  
  MMETSP0890-20130614|1735_1 184 WSTSWQDLKDFFRQVGNVVYSSIMTEDDTgrskgcGIVEFETPEEALKAIETLHDAeL 241
                 567899**************99888777623333358****************99932 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 1.9e-05
                 S--HHHHHHHT-----EEEE--------......--EEESS-..HHHH---TTTT- CS
   PF08777.6  12 elsredikelfsklgevkyvdfkegdke......gevrFkedeaakkalekatean 61 
                  +s +d+k+ f++ g+v y  +   d +      g+v F+++e+a +a+e++ +++
  MMETSP0890-20130614|1735_1 304 STSWQDLKDYFRQAGNVVYASVMTEDDTgrskgcGIVEFETSEQAVQAIESLHDSE 359
                 57789**************99988887723333358****************9992 PP

>> PF13645.1  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0045       6.2     135     168 ..      88     120 ..      83     126 .. 0.79
   2 ?    4.6   0.0     0.011        15     138     168 ..     204     234 ..     198     240 .. 0.77
   3 !    7.1   0.0    0.0018       2.5     138     168 ..     323     353 ..     315     357 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0045
   PF13645.1 135 vseefikkqgrlgrslGCpavpeelakeiidtik 168
                 v  +++++ g+ grs GC  v+ e+ +e  ++i+
  MMETSP0890-20130614|1735_1  88 VYASVMTEDGT-GRSKGCGIVEFETVDEALHAIN 120
                 55667777777.**********999998877775 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.011
   PF13645.1 138 efikkqgrlgrslGCpavpeelakeiidtik 168
                 + i +++ +grs GC  v+ e+ +e  ++i+
  MMETSP0890-20130614|1735_1 204 SSIMTEDDTGRSKGCGIVEFETPEEALKAIE 234
                 556677778*********9998887777665 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0018
   PF13645.1 138 efikkqgrlgrslGCpavpeelakeiidtik 168
                 + + +++ +grs GC  v+ e++++ +++i+
  MMETSP0890-20130614|1735_1 323 ASVMTEDDTGRSKGCGIVEFETSEQAVQAIE 353
                 445566777****************999986 PP

>> PF11565.3  Alpha helical Porin B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.012        16      56      88 ..      78     112 ..      66     123 .. 0.82
   2 ?    5.3   0.0     0.015        20      55      87 ..     191     225 ..     181     235 .. 0.79
   3 !    6.6   0.0    0.0058       7.9      54      89 ..     309     346 ..     300     356 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
   PF11565.3  56 aaqfeqlGeld..egyaariadRaqtCGivkedtq 88 
                   +f q G++   + ++++   R + CGiv+ +t 
  MMETSP0890-20130614|1735_1  78 KDYFRQAGNVVyaSVMTEDGTGRSKGCGIVEFETV 112
                 568999999876578899999*********98874 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.015
   PF11565.3  55 faaqfeqlGeld..egyaariadRaqtCGivkedt 87 
                 +  +f q+G++   + ++++   R + CGiv+ +t
  MMETSP0890-20130614|1735_1 191 LKDFFRQVGNVVysSIMTEDDTGRSKGCGIVEFET 225
                 56689999998655788999999********9886 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0058
   PF11565.3  54 nfaaqfeqlGeld..egyaariadRaqtCGivkedtql 89 
                 ++  +f q G++   + ++++   R + CGiv+ +t  
  MMETSP0890-20130614|1735_1 309 DLKDYFRQAGNVVyaSVMTEDDTGRSKGCGIVEFETSE 346
                 567799999998765778999999*********99754 PP

>> PF08442.5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.1   1.4e+02      51      80 ..      98     127 ..      75     137 .. 0.79
   2 ?    3.3   0.0      0.03        40      52      80 ..     213     241 ..     179     248 .. 0.88
   3 ?    3.5   0.0     0.026        36      51      81 ..     331     361 ..     296     371 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.1
   PF08442.5  51 GGRGKagGvklvkskeevkeaakellgkkl 80 
                  GR K+ G+   ++ +e+ +a+++l  ++l
  MMETSP0890-20130614|1735_1  98 TGRSKGCGIVEFETVDEALHAINTLNDSEL 127
                 49*****************99998877766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.03
   PF08442.5  52 GRGKagGvklvkskeevkeaakellgkkl 80 
                 GR K+ G+   +++ee+ +a+++l  ++l
  MMETSP0890-20130614|1735_1 213 GRSKGCGIVEFETPEEALKAIETLHDAEL 241
                 9********************99977776 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.026
   PF08442.5  51 GGRGKagGvklvkskeevkeaakellgkklv 81 
                  GR K+ G+   +++e++ +a+++l  ++l 
  MMETSP0890-20130614|1735_1 331 TGRSKGCGIVEFETSEQAVQAIESLHDSELD 361
                 59*********************99888876 PP

>> PF04604.8  Type-A lantibiotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        29       6      21 ..     113     128 ..     108     130 .. 0.88
   2 ?    3.4   0.1     0.038        52       7      21 ..     228     242 ..     222     243 .. 0.88
   3 ?    2.7   0.0     0.063        86       6      21 ..     346     361 ..     342     362 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.021
   PF04604.8   6 kealnslqevseeELd 21 
                 +eal ++++++++ELd
  MMETSP0890-20130614|1735_1 113 DEALHAINTLNDSELD 128
                 499************9 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.038
   PF04604.8   7 ealnslqevseeELd 21 
                 eal++++++ + ELd
  MMETSP0890-20130614|1735_1 228 EALKAIETLHDAELD 242
                 99************9 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.063
   PF04604.8   6 kealnslqevseeELd 21 
                 ++a+++++ + ++ELd
  MMETSP0890-20130614|1735_1 346 EQAVQAIESLHDSELD 361
                 389************9 PP

>> PF02306.10  Major spike protein (G protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.7   9.5e+02     137     169 ..      82     113 ..      79     122 .. 0.70
   2 ?    4.4   0.0     0.017        24     136     155 ..     170     189 ..     159     193 .. 0.87
   3 ?   -4.0   0.0       6.5   8.8e+03     137     149 ..     196     208 ..     195     215 .. 0.81
   4 ?    2.4   0.0      0.07        96     137     155 ..     290     308 ..     282     311 .. 0.86
   5 ?   -0.7   0.0      0.63   8.6e+02     137     165 ..     315     342 ..     309     356 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.7
  PF02306.10 137 rtaGndvyvGvllfsaawtagkvsGvvslnqvn 169
                 r aGn vy+ v+        +k  G+v  + v+
  MMETSP0890-20130614|1735_1  82 RQAGNVVYASVMTEDG-TGRSKGCGIVEFETVD 113
                 6789*****9998655.4455556666666665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.017
  PF02306.10 136 prtaGndvyvGvllfsaawt 155
                   t G  v+vG l +s +w+
  MMETSP0890-20130614|1735_1 170 RITLGRRVFVGNLAWSTSWQ 189
                 5799**************97 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 6.5
  PF02306.10 137 rtaGndvyvGvll 149
                 r +Gn vy  ++ 
  MMETSP0890-20130614|1735_1 196 RQVGNVVYSSIMT 208
                 5689999998885 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.07
  PF02306.10 137 rtaGndvyvGvllfsaawt 155
                 + +G  +yvG l +s +w+
  MMETSP0890-20130614|1735_1 290 VRVGRRIYVGNLAWSTSWQ 308
                 668999***********97 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 0.63
  PF02306.10 137 rtaGndvyvGvllfsaawtagkvsGvvsl 165
                 r aGn vy+ v+        +k  G+v  
  MMETSP0890-20130614|1735_1 315 RQAGNVVYASVMTEDD-TGRSKGCGIVEF 342
                 678999**99998665.444455556555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.87
# Mc/sec: 1082.49
//
Query:       MMETSP0890-20130614|1742_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-74  246.2   9.5    1.6e-23   82.2   0.2    3.0  4  PF13424.1  Tetratricopeptide repeat
    1.8e-49  164.1   4.3    9.1e-14   50.7   0.0    5.0  5  PF13374.1  Tetratricopeptide repeat
      4e-23   80.7  11.6    8.4e-13   47.6   0.4    3.1  3  PF13414.1  TPR repeat
    2.8e-19   67.6  17.3    1.7e-07   30.4   0.1    4.2  4  PF00515.23 Tetratricopeptide repeat
    3.7e-19   66.8   2.6    2.4e-05   23.6   0.0    4.1  4  PF13176.1  Tetratricopeptide repeat
    1.2e-15   55.9  15.1    6.4e-06   25.5   0.1    4.1  4  PF07719.12 Tetratricopeptide repeat
    1.6e-15   57.1   2.4    1.9e-08   34.6   0.1    2.2  2  PF13432.1  Tetratricopeptide repeat
    1.2e-12   47.1   1.7      0.004   17.5   0.1    3.5  3  PF13428.1  Tetratricopeptide repeat
    9.2e-11   40.9  11.1    0.00053   19.8   0.1    5.1  4  PF13431.1  Tetratricopeptide repeat
    1.2e-10   41.2   1.0    0.00085   19.3   0.0    2.3  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      3e-09   35.8  13.0     0.0019   17.6   0.0    3.8  4  PF13181.1  Tetratricopeptide repeat
    6.6e-08   32.3   5.2       0.22   11.9   0.1    3.4  3  PF13174.1  Tetratricopeptide repeat
    4.6e-06   26.8   1.0      0.024   14.9   0.0    3.7  4  PF14357.1  Domain of unknown function (DUF4404)
    4.6e-05   23.3   0.1      0.016   15.1   0.0    2.6  2  PF12688.2  Tetratrico peptide repeat
    0.00032   20.4   0.1        0.1   12.3   0.0    3.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00034   19.5   0.0          1    8.1   0.0    2.9  3  PF04910.9  Transcriptional repressor TCF25
    0.00038   20.0   3.6       0.25   11.0   0.0    3.4  3  PF07720.7  Tetratricopeptide repeat
     0.0022   18.1   0.1       0.53   10.7   0.0    3.6  3  PF07721.9  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.045   13.0   0.0       0.07   12.4   0.0    1.4  1  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
      0.052   12.4   0.0       0.63    8.9   0.0    2.0  2  PF08631.5  Meiosis protein SPO22/ZIP4 like
      0.071   12.9   0.0         32    4.5   0.0    2.9  3  PF09094.6  Domain of unknown function (DUF1925)
       0.09   12.2   0.1         18    4.8   0.0    2.6  2  PF11848.3  Domain of unknown function (DUF3368)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.5e-13   9.2e-11      31      77 ..       2      49 ..       1      50 [. 0.96
   2 !   80.9   0.2   6.9e-26   4.3e-23       1      78 []      14      92 ..      14      92 .. 0.98
   3 !   82.2   0.2   2.6e-26   1.6e-23       1      77 [.      56     133 ..      56     134 .. 0.97
   4 !   64.0   0.0   1.3e-20   7.8e-18       1      62 [.      98     160 .]      98     160 .] 0.98

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 1.5e-13
   PF13424.1 31 alel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                +le+  +++g +hp++a  lnnla l+ ++g+ydeA++++++Al+i e
  MMETSP0890-20130614|1742_1  2 SLEIdEKVYGKNHPNVAIDLNNLAGLLKYQGKYDEAKPLFQRALRISE 49
                799*99***************************************987 PP

  == domain 2    score: 80.9 bits;  conditional E-value: 6.9e-26
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hp++a+ lnnla++l+ +g+ydeA  l+++al +  ++lg++hpd+a++l+ la l++++g+yd A+ ++e+A+ei ek
  MMETSP0890-20130614|1742_1 14 HPNVAIDLNNLAGLLKYQGKYDEAKPLFQRALRIsEEKLGPNHPDVAMTLYKLAGLLNEQGKYDNAKLLYERAVEIWEK 92
                899************************************************************************9875 PP

  == domain 3    score: 82.2 bits;  conditional E-value: 2.6e-26
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hpd+a++l+ la++l ++g+yd A  lye+a+e+  +++g++hp++a+ lnnla l+  +g+ydeA++++++Al+ +e
  MMETSP0890-20130614|1742_1  56 HPDVAMTLYKLAGLLNEQGKYDNAKLLYERAVEIwEKVHGPNHPEVATGLNNLALLLKNQGKYDEAEPLFQRALKTRE 133
                 9*********************************88889***********************************9987 PP

  == domain 4    score: 64.0 bits;  conditional E-value: 1.3e-20
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdy 62 
                 hp++at lnnlal+l+ +g+ydeA+ l+++al+   +++g++hp++a +lnnla l++ +g+y
  MMETSP0890-20130614|1742_1  98 HPEVATGLNNLALLLKNQGKYDEAEPLFQRALKTrEEKFGPNHPQVAASLNNLAGLLENQGKY 160
                 89********************************999************************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0084       5.2      28      42 .]       2      16 ..       1      16 [. 0.91
   2 !   44.7   0.0   1.1e-14   6.7e-12       5      42 .]      21      58 ..      17      58 .. 0.97
   3 !   46.0   0.0   4.3e-15   2.6e-12       1      42 []      59     100 ..      59     100 .. 0.98
   4 !   50.7   0.0   1.5e-16   9.1e-14       1      42 []     101     142 ..     101     142 .. 0.97
   5 !   13.9   0.1   5.4e-05     0.034       1      18 [.     143     160 .]     143     160 .] 0.96

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0084
   PF13374.1 28 alairrrllGddHPd 42
                +l+i ++++G +HP+
  MMETSP0890-20130614|1742_1  2 SLEIDEKVYGKNHPN 16
                599***********5 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 1.1e-14
   PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                lnnLA +l  +g+y+eA +l+++al i ++ lG++HPd
  MMETSP0890-20130614|1742_1 21 LNNLAGLLKYQGKYDEAKPLFQRALRISEEKLGPNHPD 58
                9************************************8 PP

  == domain 3    score: 46.0 bits;  conditional E-value: 4.3e-15
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a++l  LA +l+++g+y+ A  l+e+a++i+++++G++HP+
  MMETSP0890-20130614|1742_1  59 VAMTLYKLAGLLNEQGKYDNAKLLYERAVEIWEKVHGPNHPE 100
                 79***************************************6 PP

  == domain 4    score: 50.7 bits;  conditional E-value: 1.5e-16
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a+ lnnLAl+l ++g+y+eA++l+++al +r++ +G++HP+
  MMETSP0890-20130614|1742_1 101 VATGLNNLALLLKNQGKYDEAEPLFQRALKTREEKFGPNHPQ 142
                 6888*************************************5 PP

  == domain 5    score: 13.9 bits;  conditional E-value: 5.4e-05
   PF13374.1   1 taaalnnLAlalrargry 18 
                 +aa+lnnLA +l ++g+y
  MMETSP0890-20130614|1742_1 143 VAASLNNLAGLLENQGKY 160
                 79**************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1     5e-08   3.1e-05       2      42 ..      17      65 ..      16      67 .. 0.81
   2 !   47.6   0.4   1.4e-15   8.4e-13       2      67 ..      59     131 ..      58     133 .. 0.92
   3 !   28.8   0.5   9.9e-10   6.2e-07       3      54 ..     102     160 .]     100     160 .] 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 5e-08
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyyn 42
                +A  l++l+  l ++g+ydeA  ++++Al+++     pn+++    +y 
  MMETSP0890-20130614|1742_1 17 VAIDLNNLAGLLKYQGKYDEAKPLFQRALRISeeklgPNHPDvamTLYK 65
                68899************************98656666888875445555 PP

  == domain 2    score: 47.6 bits;  conditional E-value: 1.4e-15
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                 +A +l+ l+  l ++g+yd+A  +ye+A+e++     pn++e    ++nlAl++ ++g +y+eA   +++Al+ 
  MMETSP0890-20130614|1742_1  59 VAMTLYKLAGLLNEQGKYDNAKLLYERAVEIWekvhgPNHPEvatGLNNLALLLKNQG-KYDEAEPLFQRALKT 131
                 688899*************************88888899988888*************.6************85 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 9.9e-10
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdy 54 
                 A  l++l+  l ++g+ydeA+ ++++Al+ +     pn+++    ++nlA +++++gk y
  MMETSP0890-20130614|1742_1 102 ATGLNNLALLLKNQGKYDEAEPLFQRALKTReekfgPNHPQvaaSLNNLAGLLENQGK-Y 160
                 66689***********************9855666688888888***********995.5 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.3   1.9e-08   1.2e-05       4      32 ..      21      49 ..      18      51 .. 0.93
   2 !   18.5   0.6   1.6e-06   0.00097       2      30 ..      61      89 ..      60      92 .. 0.91
   3 !   30.4   0.1   2.7e-10   1.7e-07       2      30 ..     103     131 ..     102     134 .. 0.91
   4 ?    4.7   0.3     0.034        21       1      17 [.     144     160 .]     144     160 .] 0.93

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.9e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnP 32
                l+nl+ ++ ++gkydeA   +++AL++ +
  MMETSP0890-20130614|1742_1 21 LNNLAGLLKYQGKYDEAKPLFQRALRISE 49
                79***********************9965 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.6e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                 +ly l+ ++ ++gkyd A   ye+A+e+
  MMETSP0890-20130614|1742_1 61 MTLYKLAGLLNEQGKYDNAKLLYERAVEI 89
                689*************************9 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 2.7e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                   l+nl++++ ++gkydeA+  +++AL+ 
  MMETSP0890-20130614|1742_1 103 TGLNNLALLLKNQGKYDEAEPLFQRALKT 131
                 579************************85 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHTT-H CS
  PF00515.23   1 akalynlGnaylklgky 17 
                 a +l+nl+ ++ ++gky
  MMETSP0890-20130614|1742_1 144 AASLNNLAGLLENQGKY 160
                 6789************9 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.6e-07    0.0006       2      32 ..      21      51 ..      21      55 .. 0.85
   2 !   16.1   0.0   9.7e-06     0.006       1      30 [.      62      91 ..      62      99 .. 0.85
   3 !   23.6   0.0   3.9e-08   2.4e-05       2      34 ..     105     137 ..     104     139 .. 0.89
   4 ?    5.3   0.1     0.028        18       1      15 [.     146     160 .]     146     160 .] 0.95

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9.6e-07
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
                l+nLa l   +g+y++A  l++raL++ ++ 
  MMETSP0890-20130614|1742_1 21 LNNLAGLLKYQGKYDEAKPLFQRALRISEEK 51
                89*********************66665554 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 9.7e-06
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                +l+ La l  ++g+y++A  lyera ++++
  MMETSP0890-20130614|1742_1 62 TLYKLAGLLNEQGKYDNAKLLYERAVEIWE 91
                6899********************666655 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 3.9e-08
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpld 34 
                 l+nLa l  ++g+y++A+ l++raL+ +++ ++
  MMETSP0890-20130614|1742_1 105 LNNLALLLKNQGKYDEAEPLFQRALKTREEKFG 137
                 89*********************8887777665 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.028
   PF13176.1   1 allnLarlysrlgdy 15 
                 +l+nLa l +++g+y
  MMETSP0890-20130614|1742_1 146 SLNNLAGLLENQGKY 160
                 79***********98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   2.9e-08   1.8e-05       3      32 ..      20      49 ..      18      51 .. 0.91
   2 !   12.7   0.4   0.00013     0.082       3      30 ..      62      89 ..      60      89 .. 0.87
   3 !   25.5   0.1     1e-08   6.4e-06       2      29 ..     103     130 ..     102     134 .. 0.93
   4 ?    2.6   0.1      0.23   1.4e+02       1      17 [.     144     160 .]     144     160 .] 0.90

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.9e-08
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldP 32
                 l+nl+ ++ ++g+y+eA+ +f++Al++  
  MMETSP0890-20130614|1742_1 20 DLNNLAGLLKYQGKYDEAKPLFQRALRISE 49
                589***********************9975 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                 ly l+ ++ ++g+y+ A+ ++e+A+e+
  MMETSP0890-20130614|1742_1 62 TLYKLAGLLNEQGKYDNAKLLYERAVEI 89
                67888888889**************996 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 1e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                  +l+nl+l++ ++g+y+eA+ +f++Al+
  MMETSP0890-20130614|1742_1 103 TGLNNLALLLKNQGKYDEAEPLFQRALK 130
                 689************************8 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHTT-H CS
  PF07719.12   1 aealynlGlayyklgdy 17 
                 a  l+nl+ +++++g+y
  MMETSP0890-20130614|1742_1 144 AASLNNLAGLLENQGKY 160
                 5679***********99 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1     3e-11   1.9e-08       3      60 ..      24      89 ..      22      99 .. 0.90
   2 !   22.7   0.3   1.6e-07    0.0001       3      47 ..     108     160 .]     106     160 .] 0.93

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3e-11
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                lA +l ++G+ydeA +++++al+          P+ a  l+ la +l ++g++d A  l+++a+++
  MMETSP0890-20130614|1742_1 24 LAGLLKYQGKYDEAKPLFQRALRISeeklgpnhPDVAMTLYKLAGLLNEQGKYDNAKLLYERAVEI 89
                7888999*******************************************************9943 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.6e-07
   PF13432.1   3 lArallraGdydeAlaaleaalala........Peaaeallllaeallrlgrl 47 
                 lA++l ++G+ydeA++++++al+          P+ a  l +la +l  +g++
  MMETSP0890-20130614|1742_1 108 LALLLKNQGKYDEAEPLFQRALKTReekfgpnhPQVAASLNNLAGLLENQGKY 160
                 8999**************************99999999999999999999986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.8e-05     0.061       6      39 ..      23      61 ..      18      64 .. 0.82
   2 !   15.0   0.0   4.1e-05     0.026       3      39 ..      62     103 ..      60     106 .. 0.87
   3 !   17.5   0.1   6.4e-06     0.004       4      31 ..     105     132 ..     101     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.8e-05
   PF13428.1  6 alarallalGdpdeAiallrrala.....laPddaeall 39
                 la +l  +G +deA  l++ral+     l+P+++++ +
  MMETSP0890-20130614|1742_1 23 NLAGLLKYQGKYDEAKPLFQRALRiseekLGPNHPDVAM 61
                6999999***************98666667888888765 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4.1e-05
   PF13428.1   3 allalarallalGdpdeAiallrrala.....laPddaeall 39 
                 +l++la +l ++G +d A  l++ra++     ++P+++e+ +
  MMETSP0890-20130614|1742_1  62 TLYKLAGLLNEQGKYDNAKLLYERAVEiwekvHGPNHPEVAT 103
                 6899**********************9777777888888876 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 6.4e-06
   PF13428.1   4 llalarallalGdpdeAiallrralala 31 
                 l  la +l ++G +deA+ l++ral++ 
  MMETSP0890-20130614|1742_1 105 LNNLALLLKNQGKYDEAEPLFQRALKTR 132
                 5679*********************953 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0021       1.3       8      33 ..      13      38 ..      12      39 .. 0.91
   2 !    9.4   0.1    0.0018       1.1       9      33 ..      56      80 ..      40      81 .. 0.80
   3 !   19.8   0.1   8.5e-07   0.00053       1      33 [.      82     122 ..      82     123 .. 0.79
   4 ?    6.8   0.2     0.013       7.8       9      29 ..     140     160 .]     124     160 .] 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0021
   PF13431.1  8 ldPnnadaynnLAelllnnGdleeAe 33
                ++Pn a  +nnLA ll+ +G+++eA+
  MMETSP0890-20130614|1742_1 13 NHPNVAIDLNNLAGLLKYQGKYDEAK 38
                68999999****************97 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0018
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a+ ++ LA ll ++G+++ A+
  MMETSP0890-20130614|1742_1 56 HPDVAMTLYKLAGLLNEQGKYDNAK 80
                5677******************986 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 8.5e-07
   PF13431.1   1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33 
                 lye+a+e+      Pn+   a  +nnLA+ll+n+G+++eAe
  MMETSP0890-20130614|1742_1  82 LYERAVEIWekvhgPNHpevATGLNNLALLLKNQGKYDEAE 122
                 6888888866666666644477778***************7 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.013
   PF13431.1   9 dPnnadaynnLAelllnnGdl 29 
                 +P  a ++nnLA ll n+G++
  MMETSP0890-20130614|1742_1 140 HPQVAASLNNLAGLLENQGKY 160
                 566699*************97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   0.00012     0.072      28      83 ..      21      85 ..       4      86 .. 0.65
   2 !   19.3   0.0   1.4e-06   0.00085       2      78 ..      31     122 ..      30     125 .. 0.76
   3 !   18.7   0.0   2.1e-06    0.0013       1      59 [.      72     142 ..      72     160 .] 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00012
                HHHHHHHHHH---HHHHHHHHHC......TSHCHCB...HHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2 28 lyalAlclylngeykrAyellrk......leldsss...lgcryllArcllklgkydeAiavLek 83
                l +lA  l  +g+y++A  l+++      ++l +++   + + y lA  l ++gkyd A  ++e+
  MMETSP0890-20130614|1742_1 21 LNNLAGLLKYQGKYDEAKPLFQRalriseEKLGPNHpdvAMTLYKLAGLLNEQGKYDNAKLLYER 85
                44557777778888888888877877777777777744333344557888888888888776665 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.4e-06
                 TT-HHHHHHHHHHHCCC-ST.....-HHHH....CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHC CS
   PF12895.2   2 qhnyknAlflaekllaespk.....dpeda....ylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAi 78 
                 q+ y++A  l++++l  s +               ly lA  l ++g+y+ A  l+++      + + +++++ +     lA  l  +gkydeA+
  MMETSP0890-20130614|1742_1  31 QGKYDEAKPLFQRALRISEEklgpnH---PdvamTLYKLAGLLNEQGKYDNAKLLYERaveiweKVHGPNHPEVATglnNLALLLKNQGKYDEAE 122
                 688999*********99987666532...1334577779**********99999998899999555555888888854445566668999***97 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.1e-06
                 HTT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHH CS
   PF12895.2   1 eqhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk......leldssslg 59 
                 eq+ y+nA +l+e++++   k      p  ++ l +lAl l ++g+y++A  l+++      +++ +++++
  MMETSP0890-20130614|1742_1  72 EQGKYDNAKLLYERAVEIWEKvhgpnHPeVATGLNNLALLLKNQGKYDEAEPLFQRalktreEKFGPNHPQ 142
                 6899999999999999999888887422345566668*****************99976666555556654 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   6.2e-05     0.039       4      32 ..      21      49 ..      18      51 .. 0.91
   2 !   11.4   0.5   0.00031      0.19       4      30 ..      63      89 ..      62      89 .. 0.91
   3 !   17.6   0.0   3.1e-06    0.0019       3      30 ..     104     131 ..     102     136 .. 0.90
   4 ?   -0.7   0.1       2.3   1.4e+03       2      17 ..     145     160 .]     144     160 .] 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.2e-05
                TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                ++nl+ +++  G+yd+Ak  +++al ++ 
  MMETSP0890-20130614|1742_1 21 LNNLAGLLKYQGKYDEAKPLFQRALRISE 49
                67999999*****************9985 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00031
                TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                +y l+ ++ + G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|1742_1 63 LYKLAGLLNEQGKYDNAKLLYERAVEI 89
                7888889999***************97 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 3.1e-06
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                  ++nl++++++ G+yd+A+  +++al+ 
  MMETSP0890-20130614|1742_1 104 GLNNLALLLKNQGKYDEAEPLFQRALKT 131
                 589***********************85 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 2.3
                 --TTT---HHHHTT-H CS
   PF13181.1   2 kayynlGdiYrqlGdy 17 
                 ++++nl+ ++++ G+y
  MMETSP0890-20130614|1742_1 145 ASLNNLAGLLENQGKY 160
                 5788999999999987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0017       1.1       6      28 ..      25      46 ..      23      47 .. 0.82
   2 !   11.6   0.2   0.00046      0.28       3      28 ..      63      88 ..      61      90 .. 0.91
   3 !   11.9   0.1   0.00035      0.22       5      28 ..     107     130 ..     107     132 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0017
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                ++l+ y++ ++deA+ +++r ++
  MMETSP0890-20130614|1742_1 25 AGLLKYQG-KYDEAKPLFQRALR 46
                46777766.***********985 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00046
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  3 lyklalsyyklgdtdeAlealerlik 28
                lykla ++ ++g++d+A+ ++er ++
  MMETSP0890-20130614|1742_1 63 LYKLAGLLNEQGKYDNAKLLYERAVE 88
                9****9999999***********986 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +lal+++++g++deA  +++r +k
  MMETSP0890-20130614|1742_1 107 NLALLLKNQGKYDEAEPLFQRALK 130
                 699******************997 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.64     4e+02      64      81 ..      12      29 ..      10      32 .. 0.85
   2 ?    5.9   0.0     0.025        15      58      82 ..      48      72 ..      27      75 .. 0.73
   3 ?    3.7   0.0      0.12        76      65      84 ..      97     116 ..      71     117 .. 0.81
   4 !   14.9   0.0   3.8e-05     0.024      34      84 ..     108     158 ..     100     158 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.64
   PF14357.1 64 aeHPklagtlrnildsLa 81
                ++HP++a  l+n++  L+
  MMETSP0890-20130614|1742_1 12 KNHPNVAIDLNNLAGLLK 29
                58********99998775 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.025
   PF14357.1 58 averFeaeHPklagtlrnildsLan 82
                  e+   +HP++a+tl +++  L++
  MMETSP0890-20130614|1742_1 48 SEEKLGPNHPDVAMTLYKLAGLLNE 72
                56777789*********99988875 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.12
   PF14357.1  65 eHPklagtlrnildsLanmG 84 
                 +HP++a  l+n++  L+n G
  MMETSP0890-20130614|1742_1  97 NHPEVATGLNNLALLLKNQG 116
                 7************9999865 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 3.8e-05
   PF14357.1  34 ieealeeedaseaedeslaerlneaverFeaeHPklagtlrnildsLanmG 84 
                 +  +l+++ + ++ ++ ++  l++  e+F  +HP++a+ l+n++  L n G
  MMETSP0890-20130614|1742_1 108 LALLLKNQGKYDEAEPLFQRALKTREEKFGPNHPQVAASLNNLAGLLENQG 158
                 666777766666666666777888********************9999855 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.027        17       7      28 ..      24      45 ..      18      51 .. 0.88
   2 !   15.1   0.0   2.6e-05     0.016       3      70 ..      62     133 ..      60     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.027
   PF12688.2  7 ragarDstGeeakAvplYrrAl 28
                 ag   + G+ ++A pl++rAl
  MMETSP0890-20130614|1742_1 24 LAGLLKYQGKYDEAKPLFQRAL 45
                68999999*************8 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.6e-05
   PF12688.2   3 alferagarDstGeeakAvplYrrAla.....aGLagarrrratiqlaSsLRnlGrveeslalleaelaeapg 70 
                 +l++ ag     G+ ++A  lY+rA +     +G +  +       la  L+n G+ +e+  l++++l+  ++
  MMETSP0890-20130614|1742_1  62 TLYKLAGLLNEQGKYDNAKLLYERAVEiwekvHGPNHPEVATGLNNLALLLKNQGKYDEAEPLFQRALKT-RE 133
                 6899*********************985533335555555555668999*****************9996.44 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00016       0.1       3      38 ..      35      93 ..      33     106 .. 0.84
   2 ?    1.5   0.0      0.41   2.5e+02      16      32 ..     113     129 ..     100     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00016
                HHHHHHHHHHHHHHHTT.......................-HHHHHHHHHHHHHHHHHH CS
  PF04212.13  3 skAlelikkAveaDeag.......................kyeeAlelYkeAlelLlqa 38
                ++A++l+++A+++ e++                       ky+ A  lY+ A+e+++++
  MMETSP0890-20130614|1742_1 35 DEAKPLFQRALRISEEKlgpnhpdvamtlyklagllneqgKYDNAKLLYERAVEIWEKV 93
                6788888888888887778888888888888888888888**************99875 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.41
                 HHTT-HHHHHHHHHHHH CS
  PF04212.13  16 DeagkyeeAlelYkeAl 32 
                  ++gky+eA  l + Al
  MMETSP0890-20130614|1742_1 113 KNQGKYDEAEPLFQRAL 129
                 57899999988888877 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.064        40      43      76 ..      21      54 ..      12      60 .. 0.86
   2 !    8.1   0.0    0.0016         1      41      77 ..      61      97 ..      51     104 .. 0.88
   3 !    6.0   0.0    0.0072       4.5      42      86 ..     104     148 ..      97     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.064
   PF04910.9 43 LlqlsevyreqgdfevAndlieraLfilervfhp 76
                L +l+ +++ qg++ +A  l +raL i e+ + p
  MMETSP0890-20130614|1742_1 21 LNNLAGLLKYQGKYDEAKPLFQRALRISEEKLGP 54
                7789999******************888876665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
   PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfilervfhps 77
                 tL++l+ +++eqg++ +A  l era+ i e+v  p+
  MMETSP0890-20130614|1742_1 61 MTLYKLAGLLNEQGKYDNAKLLYERAVEIWEKVHGPN 97
                59*************************9999887776 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0072
   PF04910.9  42 tLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnas 86 
                 +L +l+ ++++qg++ +A  l +raL + e+ f p+  ++  + +
  MMETSP0890-20130614|1742_1 104 GLNNLALLLKNQGKYDEAEPLFQRALKTREEKFGPNHPQVAASLN 148
                 68999*********************9999999998877666655 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.064        40      14      25 ..      31      42 ..      30      46 .. 0.90
   2 ?    4.2   0.1     0.053        33       4      23 ..      63      82 ..      62      88 .. 0.86
   3 !   11.0   0.0    0.0004      0.25      12      25 ..     113     126 ..     107     130 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.064
                TT-HHHHHHH.. CS
   PF07720.7 14 kkkyqeArelfs 25
                ++ky+eA  lf+
  MMETSP0890-20130614|1742_1 31 QGKYDEAKPLFQ 42
                8******99988 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.053
                HHHHHHHHHHTT-HHHHHHH CS
   PF07720.7  4 lyslAaefynkkkyqeArel 23
                ly+lA  +  ++ky+ A  l
  MMETSP0890-20130614|1742_1 63 LYKLAGLLNEQGKYDNAKLL 82
                8999999999*****99666 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.0004
                 HHTT-HHHHHHH.. CS
   PF07720.7  12 ynkkkyqeArelfs 25 
                  n++ky+eA+ lf+
  MMETSP0890-20130614|1742_1 113 KNQGKYDEAEPLFQ 126
                 59**********99 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.77   4.8e+02      14      26 .]      31      43 ..      21      43 .. 0.74
   2 ?    1.2   0.0         1   6.3e+02       2      18 ..      61      77 ..      60      80 .. 0.84
   3 !   10.7   0.0   0.00086      0.53       4      26 .]     105     127 ..     102     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.77
                -------HHHHHT CS
   PF07721.9 14 lGdldeAraller 26
                +G +deA  l++r
  MMETSP0890-20130614|1742_1 31 QGKYDEAKPLFQR 43
                9******888765 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 1
                HHH---HHHHHH----- CS
   PF07721.9  2 rallaLArallalGdld 18
                 +l+ LA +l ++G +d
  MMETSP0890-20130614|1742_1 61 MTLYKLAGLLNEQGKYD 77
                678889********988 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00086
                 H---HHHHHH-------HHHHHT CS
   PF07721.9   4 llaLArallalGdldeAraller 26 
                 l +LA +l  +G +deA+ l++r
  MMETSP0890-20130614|1742_1 105 LNNLALLLKNQGKYDEAEPLFQR 127
                 569***************99876 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.07      92     152 ..      33      94 ..       5     140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
   PF09986.4  92 tldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeay 152
                 ++dea   ++ al    e    ++   A+++ +lA l +++++  + kl++++A+e+++++ 
  MMETSP0890-20130614|1742_1  33 KYDEAKPLFQRALRIsEEKLGPNHPDVAMTLYKLAGLLNEQGKYDNAKLLYERAVEIWEKVH 94 
                 56788888888887735556667779*******************************99875 PP

>> PF08631.5  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0     0.001      0.63       6     123 ..      31     101 ..      23     133 .. 0.45
   2 ?    6.9   0.0     0.004       2.5       5      73 ..      72     137 ..      69     150 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.001
   PF08631.5   6 egdldlAehllskakslkn.lldpdlteeLarvlyniGkellerktdfseavkwlkraldlleklakidqkstelselkfsvlrllakalletgesesvlkakkvlsllesefpnkpel 123
                 +g +d A+ l+++a +  +  l p +    a +ly+ +  l e+  ++++a+ + +ra ++ ek                                               + pn+pe+
  MMETSP0890-20130614|1742_1  31 QGKYDEAKPLFQRALRISEeKLGP-NHPDVAMTLYKLAGLLNEQG-KYDNAKLLYERAVEIWEK----------------------------------------------VHGPNHPEV 101
                 444444444444444444422222.22334444444444444444.444444444444444444..............................................344444444 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.004
   PF08631.5   5 regdldlAehllskakslknlldpdlteeLarvlyniGkellerktdfseavkwlkraldlleklakid 73 
                 ++g +d A+ l+++a    +     +  e a +l n ++ l ++  +++ea  +++ral+  e   k +
  MMETSP0890-20130614|1742_1  72 EQGKYDNAKLLYERAVEIWEKVHGPNHPEVATGLNNLALLLKNQG-KYDEAEPLFQRALKTREE--KFG 137
                 799999999999999999997778888899***************.*************98544..444 PP

>> PF09094.6  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.082        51       6      26 ..      30      50 ..      27      68 .. 0.78
   2 ?    4.5   0.0     0.051        32       7      31 ..      73      97 ..      68     116 .. 0.76
   3 ?    1.4   0.0      0.46   2.9e+02       8      26 ..     116     134 ..     111     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.082
                HHHH-HHHHHHHHHHHHHHHH CS
   PF09094.6  6 FlvkYeesnemhkrmlevskk 26
                +  kY+e++ +++r l +s++
  MMETSP0890-20130614|1742_1 30 YQGKYDEAKPLFQRALRISEE 50
                5679**************986 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.051
                HHH-HHHHHHHHHHHHHHHHHTT-. CS
   PF09094.6  7 lvkYeesnemhkrmlevskklksle 31
                  kY++++ +++r +e+++k++  +
  MMETSP0890-20130614|1742_1 73 QGKYDNAKLLYERAVEIWEKVHGPN 97
                569*****************98763 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.46
                 HH-HHHHHHHHHHHHHHHH CS
   PF09094.6   8 vkYeesnemhkrmlevskk 26 
                  kY+e++ +++r l+ +++
  MMETSP0890-20130614|1742_1 116 GKYDEAEPLFQRALKTREE 134
                 59**********9988764 PP

>> PF11848.3  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.038        24      11      27 ..      27      43 ..      27      48 .. 0.88
   2 ?    4.8   0.0      0.03        18      10      26 ..     110     126 ..     109     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.038
   PF11848.3 11 lAkrkGlIsevkpllda 27
                l+k +G+ +e+kpl ++
  MMETSP0890-20130614|1742_1 27 LLKYQGKYDEAKPLFQR 43
                6899*********9775 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.03
   PF11848.3  10 llAkrkGlIsevkplld 26 
                 ll+k +G+ +e++pl +
  MMETSP0890-20130614|1742_1 110 LLLKNQGKYDEAEPLFQ 126
                 689***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 563.85
//
Query:       MMETSP0890-20130614|1743_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-19   70.2   0.1    1.9e-06   27.8   0.0    3.4  3  PF00595.19 PDZ domain (Also known as DHR or GLGF)
      3e-15   55.7   0.0    8.6e-05   22.2   0.0    3.5  3  PF13180.1  PDZ domain
  ------ inclusion threshold ------
       0.21   11.9   2.0        0.4   11.0   1.4    1.4  1  PF12542.3  Pre-mRNA splicing factor


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.6e-08   0.00021      27      59 ..     154     186 ..     138     193 .. 0.91
   2 !   27.8   0.0   4.1e-10   1.9e-06       9      59 ..     236     284 ..     229     287 .. 0.85
   3 !   17.0   0.0   9.6e-07    0.0044      10      65 ..     398     452 ..     392     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.6e-08
                 EEEEESTTTHHTTTTSBSTTCEEEEETTEBGTT CS
  PF00595.19  27 ifvsevvpggaaeagglkeGDkIlsvNgvdven 59 
                 + v++v+  gaa ++g+++GD ++++Ng+ +++
  MMETSP0890-20130614|1743_1 154 ALVTKVNTQGAASRAGIRVGDYVIAMNGRALAD 186
                 679*************************98875 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 4.1e-10
                 TSH---EEEESSTTSSSSEEEEESTTT.HHTTTTSBSTTCEEEEETTEBGTT CS
  PF00595.19   9 rgglGfslkggsdkrdkgifvsevvpg.gaaeagglkeGDkIlsvNgvdven 59 
                 +++lG+s+ +      + + vs+v pg  aa+ g +k +D+I+s+Ng+d++n
  MMETSP0890-20130614|1743_1 236 QSPLGMSIERCIRT--QRARVSKVAPGgRAAKLG-IKTDDVIVSLNGRDTSN 284
                 78899999998887..7**********5555555.**************998 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 9.6e-07
                 SH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHH CS
  PF00595.19  10 gglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdea 65 
                 g++G++l +      +  +v+ ++pg+ ae++g+++G  + ++Ng++  +++h +a
  MMETSP0890-20130614|1743_1 398 GPIGLRLEERLGL-IPVSVVTLIQPGSQAEKAGISIGSTLQGINGEKYLSHAHTTA 452
                 5666666664444.47779****************************999999887 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.7e-07   0.00077      14      54 ..     152     192 ..     132     207 .. 0.84
   2 !   22.2   0.0   1.9e-08   8.6e-05       4      48 ..     240     284 ..     230     293 .. 0.80
   3 !   10.0   0.0   0.00012      0.54      17      57 ..     415     455 ..     398     461 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.7e-07
   PF13180.1  14 rgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlks 54 
                 + +lv++V+ ++ a++ag+++GD +++ +g+++ + ++++s
  MMETSP0890-20130614|1743_1 152 SLALVTKVNTQGAASRAGIRVGDYVIAMNGRALADYDEFIS 192
                 56899****************************99998887 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.9e-08
   PF13180.1   4 GvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvks 48 
                 G s++    t++++v +V++++ aak g+k++D+i++++g++ ++
  MMETSP0890-20130614|1743_1 240 GMSIERCIRTQRARVSKVAPGGRAAKLGIKTDDVIVSLNGRDTSN 284
                 444444444899****************************99765 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00012
   PF13180.1  17 lvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslll 57 
                 +v+ ++++s a+kag+ +G ++  ++g+k  s ++    l+
  MMETSP0890-20130614|1743_1 415 VVTLIQPGSQAEKAGISIGSTLQGINGEKYLSHAHTTATLR 455
                 34559***********************9966666555555 PP

>> PF12542.3  Pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   8.7e-05       0.4      10      85 ..      37     116 ..      29     122 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.7e-05
   PF12542.3  10 MYegpe.k..skeaeereeyllGKkridkllekkdeeeakkkskeeektkaaqea.nserdtarklreDPLlaikkqeqe 85 
                 +Y + + +   ++ +++ e ll K+r+   +++ +e++++  s ++++t +  e+ ++++ ++++l++ P++a ++++ +
  MMETSP0890-20130614|1743_1  37 LYTSRPaAyyREQLANQVEQLLEKRRTGRGVLSDEESKEEPSSPQSDDTVDIAENkKQNNLKKKTLSAPPIAALQRKKNK 116
                 677776436678899999**********9999888777776666555554444441555555555699999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:01.29
# Mc/sec: 871.23
//
Query:       MMETSP0890-20130614|1744_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.86
# Mc/sec: 905.60
//
Query:       MMETSP0890-20130614|1745_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-10   40.2  14.9    4.9e-06   26.7   3.5    3.3  3  PF00264.15 Common central domain of tyrosinase
    6.1e-05   22.5   1.2    0.00012   21.6   0.1    2.0  2  PF00801.15 PKD domain
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.064   13.0   0.0    1.5  1  PF06832.7  Penicillin-Binding Protein C-terminus Family


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   3.5   1.1e-09   4.9e-06       3     193 ..     209     397 ..     207     422 .. 0.60
   2 !    4.8   0.1    0.0055        25      57      70 ..     490     503 ..     472     518 .. 0.76
   3 !   14.2   0.1     7e-06     0.032     192     216 ..     523     546 ..     513     549 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.1e-09
                 --CCCCTCCSSS---SSSSSSS----S----TTHHHHHHHHHHHHHHHHHH--....------B---S--SS--HHHH-SEEE-TSST-....EEE-T..T---EETTTTEE-B-..--S-GCCS--------......................-HHHHHHHHHHH-.........-SHHHHHHHHHH..........HHHHHHHH--.-- CS
  PF00264.15   3 sydqlagiHgaplkewkeaakknkgyciHgsvlFltWHRpYlllfEqalreecgyaapdvrlPYWdwaeeelpedlansaifdkepegkgggcvtnplysfkakdltvelgkveedaekkkeaetkrclkrnl.....................eatsanqelakqedveellakllsdytgfsntsegagksalslespHnavHvwvGgGh 193
                 s ++++ +H +        a+ +  +  H+ + F t H +  l+fE+ l++++    ++v lPYWd++++e+ ++  + a + ++  g  ++ v  p    ++++  v+ g       +k+ ++ +r ++ n+                     ++ts+++el   +  +++ a + +++ + ++ ++g         + H+++H  +Gg  
  MMETSP0890-20130614|1745_1 209 SVHYFVRMHLY-------YAASKDCDHWHEGPGFYTSHIAMSLQFERSLQSVD----STVSLPYWDFTKDEYWAQGDPMA-WRNASFGVFADDVLGPA-APSNENHLVDTGFWAGVSVMKNAQKYSRIVNANNelrapwinpiasisgfrrhqvDETSDDTELSPPSCKHHWWALNQPSWAQLAANLNG---------ASHGSMHKLIGG-A 397
                 66788888884.......4566778889*************************....99*********555555444444.44444444255554444.333344444444444445555556666666666666666633333322222222233333333333333333433334555555555555.........99*********5.3 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0055
                 ...------B---S CS
  PF00264.15  57 yaapdvrlPYWdwa 70 
                 ++++++++PYWd +
  MMETSP0890-20130614|1745_1 490 QKNSTFTFPYWDAQ 503
                 56789*******98 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 7e-06
                 -----TTGGGGSTHHHHHHHHHHHH CS
  PF00264.15 192 GhmgdvavaafDPiFflHHaniDrl 216
                 G+m + a++ fDP F+  H  iDr+
  MMETSP0890-20130614|1745_1 523 GDM-NAASSTFDPSFWPIHPTIDRI 546
                 777.999*****************8 PP

>> PF00801.15  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   2.6e-08   0.00012      12      59 ..      99     151 ..      92     152 .. 0.77
   2 ?   -3.9   0.0       2.3   1.1e+04      27      35 ..     189     201 ..     187     213 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.6e-08
                 -EEEEEE--.....BSECEEEEE---..--EE-SSSEEEE-S----EEEEEEE CS
  PF00801.15  12 etvaftasv...ddgspvtylWdfgD..gqtltgpnvthtynkpGtYtVtltv 59 
                 ++ +++a +    + s   y+W+ +    +t++++++th++ + GtY V++ +
  MMETSP0890-20130614|1745_1  99 RNTKLEAKGgvaAATSTSLYTWYIDGiqIGTTSSKTLTHIFPHVGTYRVQVSA 151
                 444444444334555555699*******99*********************87 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.3
                 EEEEE---....- CS
  PF00801.15  27 tylWdfgD....g 35 
                   lW+  D    +
  MMETSP0890-20130614|1745_1 189 KTLWTTSDkegrA 201
                 5689999966553 PP

>> PF06832.7  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.064      37      84 ..     103     154 ..      86     162 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.4e-05
   PF06832.7  37 lkargg.ka.....pltWfldgeplgetgrerelawqpaepGrhrltvvDakGq 84 
                 l+a+gg +a      +tW++dg  +g+t+++  + + p   G +r++v  a Gq
  MMETSP0890-20130614|1745_1 103 LEAKGGvAAatstsLYTWYIDGIQIGTTSSKTLTHIFP-HVGTYRVQV-SALGQ 154
                 4444443334455589*********9999999999999.*******99.45554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:00.85
# Mc/sec: 1993.21
//
Query:       MMETSP0890-20130614|1747_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-16   57.6   0.0    1.3e-15   56.9   0.0    1.3  1  PF00466.15 Ribosomal protein L10


Domain annotation for each model (and alignments):
>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   9.6e-20   1.3e-15       3      98 ..      60     158 ..      58     160 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 9.6e-20
                 HHHHHHHHHHHHHHHCTTSEEEEE------HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-..-....-GGGG---EEEEEE---THHHHHHHHHH CS
  PF00466.15   3 kekKeelvkelkellkkyssvlvvdydgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeeek....lkellkgptaliftnedpvelakvlekf 98 
                 +  K+ +v++++e+++++s ++ ++ +gl+ k +++lR +l e+  + +++kntlm rA  ++g++e+     ++ ++g++++if+ ed+   +k++e++
  MMETSP0890-20130614|1747_1  60 PTGKRTTVSSVSEQIEESSLLFAFNGKGLDLKTISDLRSRLPEN-TKAQMVKNTLMLRAGVDAGWSESvleeSASIFAGSNLWIFSGEDMRGSIKAYEAW 158
                 6789***************************************9.********************87554444699******************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.45s 00:00:01.00 Elapsed: 00:00:00.59
# Mc/sec: 1035.71
//
Query:       MMETSP0890-20130614|1748_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-20   72.3  10.2    7.1e-19   68.0   7.1    2.6  1  PF00026.18 Eukaryotic aspartyl protease


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   7.1   5.2e-23   7.1e-19       2     313 ..      56     421 ..      55     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 5.2e-23
                 EEEEEEE----E..EEEEEBE------EEEBTTSSCCGHHTS--B-GGG-TT-EE---B--EE-----EE-EEEEEEEE----EEEEEEEEEEEEE-HHHHCCTS-.....---B-E--GGG-S-B.................................................---HHHHHHHC--CSSSEEEE---STT----EEE---BCCCEE-EEEEEEBC.....-SSS-EEEBEEEE----..EEEEEEBE....EEE-----SEEE-HHHHHHHHHHH--EETS.........SEEEETTGG-GS-EEEEETT.S-EEEEEGGGGEEEC--STTSEEEESEEETT-ST--SSEEE--TTGGGEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx..xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00026.18   2 YfgeisiGtpeq..kftvifDTGSsdlWVpskkctssackshstydpskSstykkngksfsisYGdgsvsGflsqDtvklggltvkeqefgeatkepgstflaakf.....dGilGlgfkeievge................................................tatpvfdtllsqglidepvFsvylnsdaeggelvfGgvDeskykGsltyvpvt.....kkgywqvelesvtvgdk..tfcssgcq....ailDtGTsllalpesivekiakavgaaese........geyvvdCsslsslpdiaftvg.gkkitvsaselvlkesesasaiCilglqeldvpeegelwiLGdvFlrsaytvfdldnnrvglAe 313
                 Y+ +i + t ++  +++vi+D GSs+l    ++c+    ++  + d         +++ ++++YG+g   G+     v++g ++ ++  +  +t  +g+ +++  f     +GilGl++ +++ ++                                                tatp+ d + ++gl++++vF++ + s     e   GgvDe+ ++ ++tyv+ +       gy+ v l++v v+d+   ++ss  +    +++D+GT+l++lp+++ +ki+k+++ +  +         ++ vd ++l++lpdi+ ++  g +  +s+ e++l+ ++      + g+ +      +++ i+G++ l++  +vfd +nn +g+  
  MMETSP0890-20130614|1748_1  56 YVVDIAVNTSDKiaEYSVIVDSGSSNLALALASCSCGTGSNDLVIDIV-------SDECIEVTYGSGAWWGYET-VAVQVGFIQGQGEPLMVSTPFAGIELQEDFFegggySGILGLAYISLAESYsseycmystesqrrtnrpssrsrfyvqpsekdldeeelfttrgqvttqTATPLLDVMNDNGLLNSNVFTLTFCSTT--AEFAIGGVDET-VTTQITYVDCQktydeFYGYYLVYLDQVIVDDTaiDVSSSDLNqvggVLVDSGTTLIYLPHKATSKIQKQLEDSFDSddaeaffsMYSCVDEDQLTNLPDISLNLAgGYSLVLSPLEYTLNYGDCY----YYGIAS------SDVGIIGNIALQNKIVVFDKTNNLIGFGD 421
                 7778888887754489**************999999988888887777.......67889********999754.47899999999999*****9999887666662222268*******999888899********************************************99********************9998876..9********97.5679******9888777899*************774444444467789***********************999888999**9999999999**********9986599**********9986553....678888......7789**********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.77
# Mc/sec: 1689.90
//
Query:       MMETSP0890-20130614|1754_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.64    9.9   7.5       0.12   12.3   2.1    2.0  2  PF13118.1 Protein of unknown function (DUF3972)
       0.79    9.6   3.4          7    6.5   0.0    2.6  2  PF08269.6 Cache domain
        4.5    6.9   6.4        3.7    7.2   1.4    2.5  3  PF07889.7 Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> PF13118.1  Protein of unknown function (DUF3972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.1   2.6e-05      0.12      35     113 ..      54     134 ..      44     145 .. 0.84
   2 ?   -2.0   0.1      0.67   3.1e+03      25      46 ..     250     272 ..     231     291 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.6e-05
   PF13118.1  35 askgtkalvkkaekeliaadesstllees..fvektigtilnlhekvldakdETiealknenkfLKealysmqelydedrk 113
                 a + + a+vk++e+ ++a ++ +++++++  +vekt +t+     kv +a  E +e+++++ +    a + +++ y++ ++
  MMETSP0890-20130614|1754_1  54 AYNAQTAVVKTTEAVITAPANIKKSVSNTieLVEKTTETVRRAPTKVSQAVSEAVEVVEQTRENVVSAPVKVSTAYKQAQQ 134
                 55567789999999988887777777765559*******************************999999999999988765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.67
   PF13118.1  25 ke.eegkiyieaskgtkalvkka 46 
                  e e+ ki ++ s++  ++v+++
  MMETSP0890-20130614|1754_1 250 DEdEKKKIESPSSSNSPSIVPTK 272
                 33244444444444444555443 PP

>> PF08269.6  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4      0.02        92       8      47 ..      96     135 ..      87     153 .. 0.79
   2 ?    6.5   0.0    0.0015         7      10      67 ..     159     216 ..     149     232 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.02
                 HHHHHHHHHH----TTHHHHHH----.....--HHHHHHH CS
   PF08269.6   8 reealknvvemalsiieelekqakegklseeeAqeqakal 47 
                   +++++ v++a++++e+ ++++ +  ++   A +qa+++
  MMETSP0890-20130614|1754_1  96 APTKVSQAVSEAVEVVEQTRENVVSAPVKVSTAYKQAQQR 135
                 5578889999999999999999988888888887777765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0015
                 HHHHHHHH----TTHHHHHH----.....--HHHHHHHHHH--SS-----EEE----- CS
   PF08269.6  10 ealknvvemalsiieelekqakegklseeeAqeqakallkklrydkdgYffviDsngt 67 
                 +a++ v ++  +i++ +e+++k+ +  +e   + a+a ++ +++ k+ +++++ +  +
  MMETSP0890-20130614|1754_1 159 SAVDTVASTPAKIVAAYEENQKKFNSIRERVGAVARAMISGVKFIKNVFVYAASTLSK 216
                 567778888899**************************************99876555 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1     5e+03      37      55 ..       7      25 ..       6      34 .. 0.74
   2 ?    7.2   1.4   0.00081       3.7      43     107 ..      56     120 ..      52     142 .. 0.73
   3 ?    2.7   0.4      0.02        93      44      99 ..     103     158 ..     101     219 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.1
   PF07889.7 37 tkrnladAvasvtkqlekv 55
                tk  ++  v++vt+ ++ v
  MMETSP0890-20130614|1754_1  7 TKAKIDSTVSTVTNTVGAV 25
                6777777788888777665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00081
   PF07889.7  43 dAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvks 107
                 +A + v k  e v +a a+ kk +s+ i+ ++++ +  +    ++++ v e+ e +++ +e+v s
  MMETSP0890-20130614|1754_1  56 NAQTAVVKTTEAVITAPANIKKSVSNTIELVEKTTETVRRAPTKVSQAVSEAVEVVEQTRENVVS 120
                 56677777788888888888888888888888888887777777777777777766666666544 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.02
   PF07889.7  44 AvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredls 99 
                 Av++  + +e+  e+v+sa  ++s   ++ +++  e+ ++++  ++ v+++  +++
  MMETSP0890-20130614|1754_1 103 AVSEAVEVVEQTRENVVSAPVKVSTAYKQAQQRYLETIATAEAATQAVASAPAKVA 158
                 55555555555566666666666665555555555555555555555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1301  (0.095158); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:01.22
# Mc/sec: 612.84
//
Query:       MMETSP0890-20130614|1752_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-06   26.1   0.0      1e-05   24.4   0.0    1.8  2  PF03081.10 Exo70 exocyst complex subunit
  ------ inclusion threshold ------
      0.066   11.5   0.0       0.11   10.8   0.0    1.2  1  PF04984.9  Phage tail sheath protein


Domain annotation for each model (and alignments):
>> PF03081.10  Exo70 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.16   1.1e+03      43     113 ..     245     312 ..     217     316 .. 0.57
   2 !   24.4   0.0   1.5e-09     1e-05     261     349 ..     594     675 ..     552     718 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.16
  PF03081.10  43 eesilrllafaeavasvkktkrspe.kllelldmyealsellpdldalfkgeassevraelnellkklseta 113
                 + ++lrl + ae+ + ++++ r p  ++++  +  ++++++   ++ +  +     +r  l+ l ++l++++
  MMETSP0890-20130614|1752_1 245 DTPLLRLMSGAEHGI-IRDKTRRPSrAIFHQKQTRQTMNSAKTAIEGAVRE---LLIRPALRALASSLRSAI 312
                 455555555555555.45555555557777777777777777777777777...455555555555555555 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1.5e-09
  PF03081.10 261 iksYldasWspvlslldddsgssvgklsskekeqikekfkkFneaFeelyrkqkawkvpDpeLreeLrreikklvipaYrkflekyges 349
                 ++ ++ a W+p+   l+       + +s ++   i  +f+ Fn+ Fe+l r + +w    pe  + Lr+   ++++ + r+f++ y+  
  MMETSP0890-20130614|1752_1 594 HAHFIHA-WKPCWAQLSG------DPISPSDISLIATRFAVFNAHFERLARSHATWPELHPEIANVLRSKLRSKILSKWRTFFQTYAPI 675
                 3459999.****888888......58899********************************************************9876 PP

>> PF04984.9  Phage tail sheath protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.5e-05      0.11     302     411 ..     207     315 ..     204     318 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.5e-05
                 S--STT.....-B-----B-SS---HHH..HHHHHH---B-EEEE.TTTEEEES--B-S-----SSS-GGGGBHHHHHHH---HHHHHHHHHHHHHTTTS----HHHHHHHHHH CS
   PF04984.9 302 eqswtspp.nngeikglldlaieltqee..rdallqagintltkd.agdgvrvegdiTtltkfttskdsafkkinvirtldllkddirsafkyvgfklndddtrssfkselnay 411
                 ++sw++ p     +k ++ ++++l qe+  ++a l a  ++l +   g++  + +d+T        +   f++ +++ t++  k++i  a+++++ +++   + ss++s++ ++
  MMETSP0890-20130614|1752_1 207 NRSWPYEPgEHPVLKQAIVVQKRLAQEQhlLEAILLAHDTPLLRLmSGAEHGIIRDKTR-----RPSRAIFHQKQTRQTMNSAKTAIEGAVRELLIRPALRALASSLRSAIEEL 315
                 79******999****************99**************999*************.....99***************************999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:01.04
# Mc/sec: 1794.96
//
Query:       MMETSP0890-20130614|1756_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-69  234.5   0.0    2.3e-69  233.9   0.0    1.3  1  PF00632.20 HECT-domain (ubiquitin-transferase)
    0.00042   19.2   7.0     0.0011   17.8   4.9    1.7  1  PF00641.13 Zn-finger in Ran binding protein and others


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9   0.0   3.3e-73   2.3e-69       3     315 ..     392     751 ..     390     752 .] 0.89

  Alignments for each domain:
  == domain 1    score: 233.9 bits;  conditional E-value: 3.3e-73
                 HHHHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----E.........................................EE...EES-------B--T.TTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.----- CS
  PF00632.20   3 lskellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedei.........................................el...velipnGanipVtn.enkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFel 315
                  +++++ ++ g+fy +++  ++y++++   ++ l  + +   +lf+f+G+ligkai+e+++l  p++ +++k+l+  ++++++d+e+ dp la++l++ll  ++s +++ +l l+F++   +++  +                                         ++    +lip+G+   V++ + k eY +++ +y+l +  ++ l  + kG++ vip   l +f+++elell+cGs   +d++d+ rnt+y+g y+   a++p+i ++w +l++++  +r++fL+F+TGs r+P  Gfa+l+      +kf+i+   ++e r+P a+TCfn+L+Lp Y sk+ l+  L++ ++   +gF +
  MMETSP0890-20130614|1756_1 392 ATEAIFTNEVGIFYFDKNASSYYIQPSAGLPPALGGHPR-ADELFEFIGRLIGKAILEHVPLAAPLAIPLWKQLI-CQPLDFDDFEDADPALARTLNWLL--NNSLDDISQLHLDFSVAIPQAK--LlcnddtslsccdadffenhefvpsyavldadtffsqqkkttNKvivRQLIPDGHLRAVDShSTKIEYAQKLWHYHLIDAHRRALWYMAKGLYAVIPPAMLCIFDAHELELLVCGSRS-VDIDDWARNTDYTGDYRrrgAKHPVIVWFWTVLRSWDHHQRSKFLQFCTGSNRVPCHGFAALQrndgkyQKFSIQSLPRSEIRFPRAHTCFNRLDLPIYGSKQELQTGLEVILSMDTTGFTM 751
                 4677889999***99999999999988888888877776.68*********************************.8***********************..6666778888888885433322..23445556777777777777888888888888777777665522565899**********978999****************************************************.9****************9999*********************************************************9999*****************************99999999975 PP

>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   4.9   1.6e-07    0.0011       4      25 ..     132     153 ..     128     153 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.6e-07
  PF00641.13   4 dWdCskClvqNfawstkCvaCq 25 
                  W+C++C+ +N+   ++C +C+
  MMETSP0890-20130614|1756_1 132 NWKCPVCCMMNPGRLSACDICS 153
                 6********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:00.88
# Mc/sec: 2047.80
//
Query:       MMETSP0890-20130614|1758_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-11   43.3   0.0    3.8e-11   42.7   0.0    1.2  1  PF13359.1  DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.043   13.2   0.0       0.17   11.2   0.0    1.9  1  PF01609.16 Transposase DDE domain


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   5.6e-15   3.8e-11      26     122 ..     184     281 ..     171     308 .. 0.91

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 5.6e-15
   PF13359.1  26 khntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklkqpgdvvlaDrgfplsdkllvpyk..kkkqlseeeeefnrrlasarihvervigrl 122
                 k+n++kv+++v+  g i f+   ++Gs sD r+++e+  l k+  + +++laDr ++  ++ll+ +k  ++  l++ + e n  ++  r++vervi+ +
  MMETSP0890-20130614|1758_1 184 KANVYKVQIAVTLTGIIFFATFLHNGSRSDCRIFNETWPLHKMY-RWEYWLADRIYNSCQRLLAGHKapDGGSLTSIQLEDNAIISYDRSTVERVIKQV 281
                 5679*********************************8888867.67**********999999999999***************************876 PP

>> PF01609.16  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05      0.17      31      88 ..     183     242 ..     163     310 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
                 -SS--.--HHHHHHH----GGGEEE.EE-GG--HHHHH...HHTT...-EEEEE--S--BBST CS
  PF01609.16  31 rkkgy.klhivvddetglplsvalt.panvhdnkllpq...lleelepkgvlvlaDaGYasee 88 
                 +k ++ k +i+v + tg+++ + +   ++++d++ + +   l ++   +  + laD+ Y s +
  MMETSP0890-20130614|1758_1 183 YKANVyKVQIAV-TLTGIIFFATFLhNGSRSDCRIFNEtwpLHKM--YRWEYWLADRIYNSCQ 242
                 444555******.9999999999888**************99999..8999******997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.98
# Mc/sec: 814.27
//
Query:       MMETSP0890-20130614|1757_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-53  181.4   1.1    8.3e-18   64.1   0.1    4.4  4  PF03069.10 Acetamidase/Formamidase family
     0.0088   15.5   0.1        2.5    7.4   0.0    2.4  2  PF00246.19 Zinc carboxypeptidase
  ------ inclusion threshold ------
       0.25   11.3   0.2         12    6.0   0.0    2.4  2  PF07830.8  Protein serine/threonine phosphatase 2C, C-terminal domain


Domain annotation for each model (and alignments):
>> PF03069.10  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.4e-10   1.1e-06      67      96 ..      91     120 ..      84     160 .. 0.84
   2 !   64.1   0.1   1.8e-21   8.3e-18     194     273 ..     258     338 ..     205     438 .. 0.84
   3 !   23.5   0.0   3.7e-09   1.7e-05      66      97 ..     534     565 ..     466     593 .. 0.81
   4 !   61.7   0.0   9.5e-21   4.3e-17     194     270 ..     702     778 ..     677     861 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.4e-10
  PF03069.10  67 vhelsGpieVegakpgDllvveildvgpie 96 
                 vh l+Gpi+Vega+pgD+l+veild++p  
  MMETSP0890-20130614|1757_1  91 VHVLTGPIYVEGAEPGDVLKVEILDLEPRF 120
                 9************************98754 PP

  == domain 2    score: 64.1 bits;  conditional E-value: 1.8e-21
  PF03069.10 194 eaiakegarTippRengGnlDiknlsrgskvylPVfveGallsiGDlHfsqGDGEvsfcaievsgevtvkvevikeg.lek 273
                  +++++ +  ipp  +gGnlD k +  g+++y+PV veGalls+GD+H++qGD E  ++ +e s + t +v+vik + l++
  MMETSP0890-20130614|1757_1 258 PPASHDSVDSIPPMPTGGNLDDKRIGIGTTMYYPVEVEGALLSMGDAHMAQGDSELDGTGVEASLTGTFRVTVIKANdLND 338
                 46789999******************************************************************9764655 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 3.7e-09
  PF03069.10  66 kvhelsGpieVegakpgDllvveildvgpiea 97 
                  vh l+Gpi V ga+pgD+l+vei d+ p  +
  MMETSP0890-20130614|1757_1 534 GVHILTGPIFVSGAEPGDILKVEIIDLLPRAN 565
                 59************************876554 PP

  == domain 4    score: 61.7 bits;  conditional E-value: 9.5e-21
  PF03069.10 194 eaiakegarTippRengGnlDiknlsrgskvylPVfveGallsiGDlHfsqGDGEvsfcaievsgevtvkvevikeg 270
                 +++++e +  ipp   gGnlD k +  gs++y+PV v Galls+GD H++qGD E  ++ ie s + + k+ vik  
  MMETSP0890-20130614|1757_1 702 APASHESVDSIPPLPSGGNLDNKRIGIGSTMYYPVEVAGALLSMGDTHAAQGDSELDGTGIETSLTGKFKISVIKSA 778
                 57899**********************************************************99999999999976 PP

>> PF00246.19  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0021       9.7      94     114 ..     117     137 ..     109     186 .. 0.68
   2 !    7.4   0.0   0.00055       2.5      93     113 ..     560     580 ..     547     604 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0021
                 ES-S-----HHHHHT-TT--S CS
  PF00246.19  94 vPvlNPDGyelsstgdrawrk 114
                  P++NPDG  ++s+   +w  
  MMETSP0890-20130614|1757_1 117 EPRFNPDGKFYASNAAAWWGF 137
                 599**********97777743 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00055
                 EES-S-----HHHHHT-TT-- CS
  PF00246.19  93 ivPvlNPDGyelsstgdrawr 113
                 ++P++NPDG  ++s+   +w 
  MMETSP0890-20130614|1757_1 560 LLPRANPDGKTYGSNAAAWWG 580
                 89************9777774 PP

>> PF07830.8  Protein serine/threonine phosphatase 2C, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.027   1.2e+02      57      75 ..     266     284 ..     262     289 .. 0.84
   2 ?    6.0   0.0    0.0025        12      57      75 ..     710     728 ..     705     734 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.027
   PF07830.8  57 edipnLPPGGglasKrsvi 75 
                 ++ip +P GG l+ Kr  i
  MMETSP0890-20130614|1757_1 266 DSIPPMPTGGNLDDKRIGI 284
                 67***********999665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0025
   PF07830.8  57 edipnLPPGGglasKrsvi 75 
                 ++ip LP GG l+ Kr  i
  MMETSP0890-20130614|1757_1 710 DSIPPLPSGGNLDNKRIGI 728
                 67*************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:01.00
# Mc/sec: 2204.65
//
Query:       MMETSP0890-20130614|1761_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-93  310.7   0.0    6.4e-93  310.2   0.0    1.2  1  PF13507.1  CobB/CobQ-like glutamine amidotransferase domain
    5.5e-12   45.8   0.0    9.6e-12   45.0   0.0    1.3  1  PF02769.17 AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13507.1  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.2   0.0   9.3e-97   6.4e-93       1     258 [.     388     662 ..     388     663 .. 0.92

  Alignments for each domain:
  == domain 1    score: 310.2 bits;  conditional E-value: 9.3e-97
   PF13507.1   1 kpkVailrepGtnceyemaaafekaGfevedvhmsdllegrvslddfqilalpGGfsygDelgsgkgiakslllneklrdaleafl.kredtlilGiCnGfqlLiklglvpggeikea.......eesptltrNksgrfesrwvnvvvsekspsvflkgme..glslpvahGeGrfvfeseevleeleangqvalrYvdeegepteeyplNPngSpeaiaGitspdGRvlglmphpervfravqknivpr.......eeeee..spwlrlFenavky 258
                 +++Vailr +G+n+++emaaaf  aG e++dv+msdl++g+++ld+f+++a++GGfsy+D+ +s+kg+a+s+l n+kl++++ +f+ +red ++lG+CnG+ql++ lg+vpgg+  ++       + +p++ +N+sg+fesrw +v +  +sp+ +++gm+  +l ++ ahGeG+++f+++++l+ + +n++++lrY+d++g+++ +yp+ PngSp++iaG++spdGR+l++mphper++ ++q+++ ++       +++ +  spwlrlF+na  +
  MMETSP0890-20130614|1761_1 388 RHRVAILRCEGSNGDREMAAAFYLAGLEPWDVTMSDLADGTTNLDKFRGIAFVGGFSYADVCDSAKGWAASILCNRKLQAQFAHFFhDREDVFSLGVCNGCQLMALLGWVPGGNMIKKdddelvsKIQPRFIHNSSGKFESRWSTVTI-LDSPCKLFQGMAgsVLGVWLAHGEGKAHFPESSILDIVLKNDLAPLRYADDSGAVSANYPYCPNGSPNGIAGLCSPDGRHLAIMPHPERAVLSWQWPWQNSnilslcsQRQ-DnaSPWLRLFQNAKLF 662
                 689***********************************************************************************6689**********************775543356788899****************99966.8**********844677789*****************************************************************************55558998885333.236*********9866 PP

>> PF02769.17  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.4e-15   9.6e-12      12     129 ..     169     277 ..     156     299 .. 0.73

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 1.4e-15
                 ---TT-HHHHHHHHHHHCT-GTB---CCCH.HHHHHHHHHHHHHT--SEEEE------CCCHHHHHHT.---EEEEEGGGSHHHHHHH-HHHHHHCS-SS-EEEEEEGGGHHHHHHHHH CS
  PF02769.17  12 lglggsgtslkrkllessglplqlgdlllektliyvvqalaaekglvkaahDitgGGLlgalaemafa.sgvgaeidldevplfeelelalemlfsensGrllvvvppedaeavlalle 129
                 ++lgg++  ++++++  +    ++  l+l  + ++ vq l+++ ++++a+hD+++GGL+++l emafa ++vg++i+++     +++      lfse +G  ++v  p+d + v++ l+
  MMETSP0890-20130614|1761_1 169 AELGGTS-IAQVFGQPGHRVS-DVCPLQLVAKAFDTVQTLIKQ-KKILAYHDRSDGGLIVTLLEMAFAsGQVGLDISIP--NTDDWI----IALFSEGPGMAIQVS-PNDYDYVMQSLN 277
                 6666666.4444333333333.56667788899999******8.************************66799999999..*****6....899999999665555.555456666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:01.33
# Mc/sec: 1218.00
//
Query:       MMETSP0890-20130614|1763_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:01.08
# Mc/sec: 683.41
//
Query:       MMETSP0890-20130614|1764_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   50.9   0.0    1.7e-13   50.2   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    4.8e-08   33.0   0.0    7.1e-08   32.4   0.0    1.2  1  PF13673.1  Acetyltransferase (GNAT) domain
    1.7e-06   27.9   0.0    2.4e-06   27.4   0.0    1.1  1  PF13420.1  Acetyltransferase (GNAT) domain
      2e-05   24.5   0.0      5e-05   23.2   0.0    1.6  1  PF13508.1  Acetyltransferase (GNAT) domain
    7.5e-05   22.3   0.0    0.00014   21.4   0.0    1.4  1  PF08445.5  FR47-like protein
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.018   14.7   0.0    1.3  1  PF13527.1  Acetyltransferase (GNAT) domain
      0.042   13.7   0.3      0.083   12.7   0.2    1.5  1  PF13480.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0     9e-17   1.7e-13       5      82 ..     116     192 ..     112     193 .. 0.93

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 9e-17
                 TEBEEEEEEEEECTTSCSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTTHSEEEEEEETTCHHHHHHHHHTT- CS
  PF00583.19   5 gelvGfaslsvigedgraertayieglaVspeyrgqGiGkaLleallekarerglerielevesgndraiklYeklGF 82 
                 +  vG a +++ + + +++ ++y+e+l+V+++ r++G+G+ L++ + + a +rg+ r+++   ++n++a+ +Y+++G 
  MMETSP0890-20130614|1764_1 116 NIGVGIALFYPTYST-WQGSCIYLEDLYVDEKSRKHGLGSLLIKSVAAFAYARGAARLHWNALDWNTPALDFYKSCGA 192
                 555899999999999.667**********************************************************7 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   3.6e-11   7.1e-08       9     116 ..      76     191 ..      68     191 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 3.6e-11
   PF13673.1   9 vsdviesqradtseeqvaawrlleaelkeiladgsstivvaerggev.vGfaglkpdas........lsllyvrpeargrGigraLldaiea.earkgikvltte...asklarplyerlG 116
                 v+       a +++e +++++l++a++k+ l  ++++ ++++ ++ + vG a+++p+ s        l +lyv ++ r+ G+g+ L++ ++a ++ +g+++l+ +    +++a ++y+ +G
  MMETSP0890-20130614|1764_1  76 VQG-----LALYENEPITTVELTAADFKRDLLAEKFYCFLVDLDDNIgVGIALFYPTYStwqgsciyLEDLYVDEKSRKHGLGSLLIKSVAAfAYARGAARLHWNaldWNTPALDFYKSCG 191
                 444.....2345556666677888899766666688888889999888*******876656666877777**********************88899********9999*********998 PP

>> PF13420.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.2e-09   2.4e-06       1     133 [.      61     191 ..      61     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.2e-09
   PF13420.1   1 iralteeDleallrlyse.p.kvrraitfeyeepsveefekfleslldsekeypflvaeesgelvGyatlrqldk..yrwkaels.iylakdnkdeglgrklldalieylfkemnienilaeiastnikaiqflkklG 133
                 ir++t +D++++lrl++    ++++ it+     ++ +f++ l     +ek y+flv+ +++  vG+a + +  +  + +++ l+  y+++++++ glg+ l++++  ++    +  ++     + n++a +f+k+ G
  MMETSP0890-20130614|1764_1  61 IRLATGADADQILRLVQGlAlYENEPITTVE--LTAADFKRDLL----AEKFYCFLVDLDDNIGVGIALFYPTYStwQGSCIYLEdLYVDEKSRKHGLGSLLIKSVAAFA-YARGAARLHWNALDWNTPALDFYKSCG 191
                 8***************663235555444432..24444554444....57*********777778888777553345********99999********************.88**********************999 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.6e-08     5e-05      23      76 ..     132     191 ..     103     191 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.6e-08
   PF13508.1  23 dgetayiggvavdpeyrgkGlGskllnklkeeygekpi...v...llarparkkFYeklG 76 
                  g + y++ ++vd++ r++GlGs l++ + +++  ++        l  ++ +++FY+++G
  MMETSP0890-20130614|1764_1 132 QGSCIYLEDLYVDEKSRKHGLGSLLIKSVAAFAYARGAarlHwnaLDWNTPALDFYKSCG 191
                 25688************************99997666421122224446679******99 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.1e-08   0.00014      24      80 ..     138     195 ..     131     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.1e-08
                 ----EE-GGG--------HHHHHHHHHH---S-EEEEEETT.-HHHHHHHHH---B-- CS
   PF08445.5  24 lgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvas.NtpsirlyeklGfeki 80 
                 l  l+v+++ r+ Glgs+l+k++a+   +rg   l + + + Ntp+  +y++ G + +
  MMETSP0890-20130614|1764_1 138 LEDLYVDEKSRKHGLGSLLIKSVAAFAYARGAARLHWNALDwNTPALDFYKSCGATRL 195
                 6779***************************988777666569*********998776 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.1e-06     0.018       1     107 [.      60     169 ..      60     192 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.1e-06
   PF13527.1   1 eirelteedldeilellkyvFqdeespl.....keireakrnlleegrvlgaed.ngkl.vgqlallpfelnvpGkelpaagvtgVatapehrgrgllrkLlarlleemrergq 107
                 eir +t +d d+il+l++    +e++p+       +  +kr+ll e+ +  + d ++ + vg + ++p   + +G+   + ++++  +++  r++gl + L++ + + +++rg+
  MMETSP0890-20130614|1764_1  60 EIRLATGADADQILRLVQGLALYENEPIttvelT-AADFKRDLLAEKFYCFLVDlDDNIgVGIALFYPTYSTWQGS---CIYLEDLYVDEKSRKHGLGSLLIKSVAAFAYARGA 169
                 69****************************9963.557788999998877777765555499*******9999**9...9**********************999999988875 PP

>> PF13480.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.3e-05     0.083      28     133 ..      66     174 ..      49     188 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.3e-05
   PF13480.1  28 pedldalldlfr..aqwarr..pdvfadpetraflrdllarlaergalrlyvlrldgrp...vAaa...lglrsggtlyyylggydpelaklspgllLlweliedaaeeGvrvfDf 133
                  +d+d++l+l+   a ++    ++   +   ++f rdlla+         +++ ld+ +   +A     +  ++g ++y+    +d+  +k+++g lL+  ++  a+++G +++++
  MMETSP0890-20130614|1764_1  66 GADADQILRLVQglALYENEpiTT--VELTAADFKRDLLAEK-----FYCFLVDLDDNIgvgIALFyptYSTWQGSCIYLEDLYVDEKSRKHGLGSLLIKSVAAFAYARGAARLHW 174
                 555666666663325566553222..2344455666666654.....44555555544442244445557888999999999999*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 808.77
//
Query:       MMETSP0890-20130614|1762_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       932  (0.0681685); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:01.03
# Mc/sec: 1221.44
//
Query:       MMETSP0890-20130614|1767_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   89.6   0.0    1.6e-25   89.0   0.0    1.3  1  PF00578.16 AhpC/TSA family
    4.4e-09   35.7   0.0    9.8e-09   34.6   0.0    1.6  1  PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
    3.7e-08   32.9   0.0    5.5e-08   32.3   0.0    1.2  1  PF08534.5  Redoxin


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   3.5e-29   1.6e-25       2     123 ..       7     140 ..       6     141 .. 0.96

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 3.5e-29
  PF00578.16   2 gdkapdfelkdtdgkkvslsdlkg.kpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekne......lnfpllsDeegevakaygvlnee......kglalratfvidkegkiry 123
                 g+ +p+   +++d ++++l+++ g ++ v+f++p+df+pvCttel a a++ eef  +gv++ g s++++ +hk+++++++      +nfpl++D+++  a + gvl++         ++lra+f++ ++ ++++
  MMETSP0890-20130614|1767_1   7 GETFPNLVGECQD-GDFDLYEYLGdSWGVIFMHPADFTPVCTTELGAAAQREEEFNLRGVKLCGFSCNDASTHKDWITDIKavtghyVNFPLFADPTRSHAVQIGVLDPSlkddkgLPMTLRALFILSPDRVVKA 140
                 8899999999998.9*******666**********************************************************************************999****99999*************986 PP

>> PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.2e-12   9.8e-09       1      33 [.     161     193 ..     161     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.2e-12
                 HHH---TSS-B--TTT.T----BE---SSHHHH CS
   PF10417.4   1 ALQladkhgvatPAnWkPGdkvivpPppteeea 33 
                 +LQl+ kh+vatP++W+ G ++iv  + ++++a
  MMETSP0890-20130614|1767_1 161 SLQLTAKHKVATPVDWTRGHDCIVDFSLSDADA 193
                 79**********************999888876 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.2e-11   5.5e-08       3     146 .]       7     156 ..       6     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.2e-11
                 -------S-----TT---EEHHHHTTSE.EEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHH......TT.TSEEE------HHHHHT..-EE-----.....-EE--EEEEEE---EEEEEE-SSTTS----TTT- CS
   PF08534.5   3 GdkaPdftlplvatdgktvslsdfkgkk.vvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawak......eglkipvlsDesasfakalglrltedasag.....irtpryavidedgkvvylevepepgeesdaeavl 146
                 G+++P+++    ++dg +++l ++ g +  v++  p  f+p+C++e+   ++ +++++ +gv+  + + ++  + k+++++      + +++p+++D++ s a ++g+       +      + +++++++  d +v++ ++ p ++  +++++vl
  MMETSP0890-20130614|1767_1   7 GETFPNLVG--ECQDG-DFDLYEYLGDSwGVIFMHPADFTPVCTTELGAAAQREEEFNLRGVKLCGFSCNDASTHKDWITDikavtgHYVNFPLFADPTRSHAVQIGVLDPS--LKDdkglpMTLRALFILSPDRVVKAAIIYPAST-GRNFDEVL 156
                 778888773..35555.799999777776899****************99999999*******************************99******************76332..22246899****************999988885.67777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 931.49
//
Query:       MMETSP0890-20130614|1769_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-17   63.7   0.0    2.8e-17   63.4   0.0    1.1  1  PF13419.1  Haloacid dehalogenase-like hydrolase
    2.9e-08   34.4   0.0    1.2e-07   32.3   0.0    1.8  1  PF00702.21 haloacid dehalogenase-like hydrolase
    4.2e-07   29.4   0.1    1.2e-06   27.9   0.0    1.8  2  PF13242.1  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.023   14.7   0.0    1.5  1  PF12710.2  haloacid dehalogenase-like hydrolase
       0.13   11.8   0.0       0.22   11.0   0.0    1.3  1  PF00458.15 WHEP-TRS domain


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0     1e-20   2.8e-17       2     174 ..       5     194 ..       4     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1e-20
   PF13419.1   2 vFDldgTLidfdfvikralrklvaerlgld...ltaaelrelggkpfeevladllrelpkd..........aeeilealkea.......nle..srlelfpdvvellrrlkakglklvilSngsaeavellleklgledlfd..avftsdd..vgarKPdpeayekvlerlgvkpeeilfidDsledveaAraaGirtv 174
                 +FD+dgTLid  +  +  ++++  e++g     ++++e+  +gg p ++++++l r+ +                    +         +++  + ++++  vv++ r+  ++g+++++ ++g +e+ve  l+  gl d f+   ++++ d   g+ KP p+++  +++r+g++p  ++  +D   +++aA  aG+ +v
  MMETSP0890-20130614|1769_1   5 LFDVDGTLIDSMRNFYPSWNAC-GEEFGFGaeiMDEKEFYSFGGWPLQDIVRELHRRRKGSeasdefvtkfI-------Q-RkkqihaqREKkyGPPGIIHPVVDIARHYVEAGIPVIAATSGLREHVEAHLQFNGLMDIFPsnMIICAADlePGCGKPKPDIFLAAAKRIGADPTKCVAYEDAEAGLQAAYTAGCEVV 194
                 7*************99***986.****7766688899999999***********998866556544443331.......2.1355566544412444578889999998855*****************************9765666666224568**************************************9875 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   4.5e-11   1.2e-07       4     204 .]       4     190 ..       1     190 [. 0.73

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 4.5e-11
                 EEEECCTTTBETHHHHHHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHCEECTCCHCCEECEEEE..EEHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC.......SEEEEHHH......TTSHHHHHHHHHHHTS-GGGEEEEESSCTTHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21   4 vvfDktGTLtegepsvlgnkaalalaaaletgsehpigkavvaaakanstrtgfatfigrgvsgkvdg..avgnpewmtalglrviapdlvaaeg..qskgrtvvvlaqaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi.......dslvfaev......kPepklfvaaieeLqidpgevamvGDgvnDapalaaAg 204
                  +fD++GTL+++ +       + a ++++        g    ++  ++        f          g   +  ++ +++  +   a+ +  +    q+k ++ +  +    +g  +++ pv + a++ v++    gi v  +t++ +e +ea  ++ g+         +  a +      kP p++f+aa+++ + dp ++++ +D   +++a+  Ag
  MMETSP0890-20130614|1769_1   4 ALFDVDGTLIDSMRNF--YPSWNACGEEF--------GFGAEIMDEKEFYS-----FG---------GwpLQDIVRELHRRRKGSEAS-DEFVTKfiQRKKQIHA--QREKKYGPPGIIHPVVDIARHYVEA----GIpVIAATSGLREHVEAHLQFNGLmdifpsnMIICAA-DlepgcgKPKPDIFLAAAKRIGADPTKCVAYEDAEAGLQAAYTAG 190
                 78**************..99999999999........55555555552222.....11.........122113333333333332322.2333331355555555..457999*****************99....************************9777764333333.269********************************9999987665 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   3.6e+03      41      57 ..     108     124 ..     107     132 .. 0.76
   2 !   27.9   0.0   4.5e-10   1.2e-06       2      52 ..     151     202 ..     150     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.3
                 ---EE----------TT CS
   PF13242.1  41 aGirsilVltGvsreed 57 
                 aGi  i  ++G+ ++ +
  MMETSP0890-20130614|1769_1 108 AGIPVIAATSGLREHVE 124
                 89999999999966544 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4.5e-10
                 ----STHHHHHHH----GGTTTEEEE---.HHHHHHHHH---EE-----..-- CS
   PF13242.1   2 lgKPnpgmydkalevlgappsevvmiGDslatDieaAnaaGirsilVlt..Gv 52 
                 +gKP p ++ +a+++ ga+p ++v  +D  ++ ++aA  aG++ + V+   G+
  MMETSP0890-20130614|1769_1 151 CGKPKPDIFLAAAKRIGADPTKCVAYEDA-EAGLQAAYTAGCEVVDVRHldGY 202
                 9****************************.*************9988765455 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.4e-06     0.023       1     124 [.       4     128 ..       4     221 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.4e-06
                 EEE------B---...........HHHHHHHHH--H...HHH........HHH..HHHHHHHHHT..-HHHH----HHHHHHHHHH..............H--BHHHHHHH......HTTEEEE-SS-HHHHHHHHH CS
   PF12710.2   1 avFDkDGTLteddtdflryllk..lldvlgealakdaslaslkdstcltlsdp..kdllellaey..ggirviglaarylealake.ieea......klfegfipdaaellkelheaglrvvvlsgdprliakpvak 124
                 a+FD+DGTL+++  +f + + +      +g+ + ++++++s+          +  +d+ + l +   g+++ +++  +++++     ++++       ++ +++    ++ +++ eag++v+ ++ ++r+ +++ ++
  MMETSP0890-20130614|1769_1   4 ALFDVDGTLIDSMRNFYPSWNAcgEEFGFGAEIMDEKEFYSF--------GGWplQDIVRELHRRrkGSEASDEFVTKFIQRKKQIhAQREkkygppGIIHPVV----DIARHYVEAGIPVIAATSGLREHVEAHLQ 128
                 79**********933333333355444555555444333222........222112333332222332444455555555544433333336667777777777....77777777788888888887777776633 PP

>> PF00458.15  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.1e-05      0.22      10      50 ..      52      92 ..      51      97 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.1e-05
                -HHHHHH-----HHHHHHHHHHHHHHHHHHHHH-------- CS
  PF00458.15 10 dlVRkLKaekapkedvdaaVakLLaLKkeykeatgkdykpg 50
                d VR+L    + +e+ d+ V+k  ++Kk+  ++ +k+y p 
  MMETSP0890-20130614|1769_1 52 DIVRELHRRRKGSEASDEFVTKFIQRKKQIHAQREKKYGPP 92
                78***********************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.71
# Mc/sec: 816.79
//
Query:       MMETSP0890-20130614|1768_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   13.0   0.1       0.14   11.9   0.0    1.6  1  PF13614.1 AAA domain


Domain annotation for each model (and alignments):
>> PF13614.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     1e-05      0.14     108     134 ..     222     248 ..     186     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1e-05
   PF13614.1 108 eqLlerlkerYdvvilDlgslldedfa 134
                 +qLl++l++++d ++lDl++l ++ f+
  MMETSP0890-20130614|1768_1 222 RQLLDALSSKFDLTLLDLPDLPSDVFK 248
                 79*******************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.93
# Mc/sec: 852.90
//
Query:       MMETSP0890-20130614|1770_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   13.5   0.8      0.085   12.7   0.5    1.4  1  PF13930.1 DNA/RNA non-specific endonuclease
       0.16   10.8   5.1       0.17   10.7   3.5    1.0  1  PF11882.3 Domain of unknown function (DUF3402)


Domain annotation for each model (and alignments):
>> PF13930.1  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.2e-05     0.085       6      47 ..      12      53 ..       6      65 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
   PF13930.1  6 ktngelyktDelgRiqkveadlslkekekrnsyqqrkagkik 47
                k+++e+ +tDe +Ri+++++  + +e++ r++++  ++   +
  MMETSP0890-20130614|1770_1 12 KVQNESQSTDEDSRIKRANVVHEESEQARRRRLTPMTVASRQ 53
                4577799*************9999999999999988887644 PP

>> PF11882.3  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.5   2.5e-05      0.17      42     131 ..      18     106 ..       3     117 .] 0.48

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.5e-05
   PF11882.3  42 eslvedeedleeevkelkkelktsaaedeikkeeeier.atkkeeikrlerveslYkealpqLqslvivllklilanvtslntseakaess 131
                 +s +ed + ++ +    +++++  + + +++   +++  +++++e++ +e+v+slY + l  Lq l   +++li  ++  ++  + ++++s
  MMETSP0890-20130614|1770_1  18 QSTDED-SRIKRANVVHEESEQARRRRLTPMTVASRQLiEEDNSEVQSVENVDSLYDQ-LETLQDLRRRVIQLIRLDAAVQSAYDTYQNKS 106
                 222222.22222222222222333333333333333335699**************75.45555555555555444444333444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1056  (0.0772382); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.46s 00:00:00.84 Elapsed: 00:00:00.63
# Mc/sec: 445.04
//
Query:       MMETSP0890-20130614|1771_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-11   42.8   2.5    2.2e-11   42.8   1.7    1.8  2  PF02037.22 SAP domain
  ------ inclusion threshold ------
      0.071   13.3   0.6       0.14   12.3   0.4    1.5  1  PF10752.4  Protein of unknown function (DUF2533)
      0.081   12.4   0.1       0.16   11.4   0.1    1.5  1  PF12949.2  HeH/LEM domain


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   1.7   4.9e-15   2.2e-11       2      32 ..      13      43 ..      12      46 .. 0.94
   2 ?   -2.5   0.0      0.75   3.4e+03      10      20 ..     202     212 .]     200     212 .] 0.76

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 4.9e-15
                TT--HHHHHHHHHHTT------HHHHHHHHH CS
  PF02037.22  2 skltVaeLKaeLkkrGLptsGkKaeLieRLk 32
                +kl+V eL+aeL+krGL+t+G+K+eL +RL+
  MMETSP0890-20130614|1771_1 13 KKLKVVELRAELEKRGLSTAGLKNELADRLQ 43
                79****************************9 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.75
                 HHHHHHTT--- CS
  PF02037.22  10 KaeLkkrGLpt 20 
                 ++ ++++GL+t
  MMETSP0890-20130614|1771_1 202 QKRAERFGLST 212
                 56678899997 PP

>> PF10752.4  Protein of unknown function (DUF2533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4     3e-05      0.14       2      62 ..     145     206 ..     144     211 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3e-05
   PF10752.4   2 eVHkaitahskKqneaikqflqldakRE..aaieeavskckkgkafstdaiNeitkkmNelAk 62 
                 + H+++ a+++K n+ +k+++++++ ++  +  +ea +k+++ + f    + +i +km + A 
  MMETSP0890-20130614|1771_1 145 SLHNEVEAQISKINDDVKKMQRMERFKDpvQGADEAKKKARA-ERFKDPSVQQIDEKMQKRAE 206
                 68**********************998833557888888765.78999999999999998886 PP

>> PF12949.2  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.6e-05      0.16       1      17 [.      12      28 ..      12      30 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.6e-05
   PF12949.2  1 pksLtVaqLRriLvehg 17
                pk+L+V +LR+ L + g
  MMETSP0890-20130614|1771_1 12 PKKLKVVELRAELEKRG 28
                9************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       994  (0.0727033); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.91
# Mc/sec: 558.27
//
Query:       MMETSP0890-20130614|1775_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-20   70.6   0.2    1.4e-19   70.1   0.1    1.4  1  PF08502.5 LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> PF08502.5  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1     1e-23   1.4e-19      34     131 ..      91     197 ..      44     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 1e-23
   PF08502.5  34 delstatvklevkdgeekeasaeGnGpvdAllnAlrkilgv......eikLldYsvhavtegtdalaevrVelev...ddgkkvsgvGvdsdiveASlkAlisalnr 131
                 ++++ atvkl + +++ +   aeG GpvdAl  A +k+l +      +i + dY+v+++   +   a++rV++ +     gk++++vGvd +i+ AS++Al+++l++
  MMETSP0890-20130614|1775_1  91 HQTARATVKLALAGQQPHLDVAEGRGPVDALAGAFKKALRStfatvdNIAIADYKVRILDPKSASRAATRVHILFkdiATGKTWTTVGVDRNIISASANALVDGLEY 197
                 37899*******77777***************99999999977767777*************************955444777********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|1774_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-36  124.4   0.0    8.5e-36  123.7   0.0    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.046   12.9   0.2       0.24   10.6   0.0    2.0  2  PF10014.4  Biofilm formation and stress response factor


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   1.2e-39   8.5e-36       8     257 ..     102     402 ..      96     403 .. 0.76

  Alignments for each domain:
  == domain 1    score: 123.7 bits;  conditional E-value: 1.2e-39
                 -.-----E.....E......EHHHHHHHHHHHH---EEEE---S----TTT-----....-...--....--------SSB..........................S--TT.-SSGGG----....--SB-S-TTSSS----EEEEEEE---..----EEEB---HHHHHHHHHHHHHHT.TEEEEEE----SS-..................--EEEEEESEEE----EEEE---TT.....TB.......-S---S-HHHHHHHHHHST..TT-EEE------EEEE-TTT-BB----------S-EEE-E CS
  PF02668.11   8 d.gaeiegv....edllsdededlaelrealaehgvvlfrglplspeqfeelarrf....g...pleqsprntfygetwdv..........................rsvkanvkdaaytpedttralplHtDlsylesppgvqlLhclenpa..eGGetlfvdgfaaynaLspelkella.egltyvysndgery...e.............eespekrhPlvrthpvtgekvlyvnp.latkiq....glvtlaeseellkaledhltdp..eftyrhkwqeGdlvifdNrrvlHgrtafddetgeRhllra 257
                 d g+e++g+    +  ++ +de l+ +++a++++g+v++r + +sp+ ++e+a+r+    g   pl+ s  n+f                                 ++ ++n+ ++ + p +  ++  +H D++ +e++ +++++ + ++p    GG+tl+++g+ ay++L+  lk + + + ++y+ +++ ++    +             e ++ ++hPl+ thpvtg k+l++ p  ++ ++    g+ +la++++l+++ ++    +   ++y h  ++Gd +i d r++lH+ t+f+++t++R l+r+
  MMETSP0890-20130614|1774_1 102 DwGCELTGIklsdN--EALSDEFLRFVADAVHRFGAVILRKQGMSPSRQVEFAARLapllGaklPLTSSADNGFK-----AedlvpglpeinclgmkergfdeeniyGKPVNNSVKGIQWPNF--GPCSWHVDGAAFETVGSFTFMSMPKAPGegNGGATLLANGYLAYEKLPKFLKSQAEaSIIRYISDGNWQYTydmKhngmrrinepgeiESEYDHTHPLIVTHPVTGHKALWSAPaNVQGFEtslqGPEYLADAQDLVEQCFQ----AgiHQVYTHFYEDGDAIISDDRAMLHSTTPFSPDTKTRILHRC 402
                 55788887778443..4444569*********************************6544355566555555554.....13445699**999998887777765552222234444444444..7*************************996666****************666666664466666666655555440344456677889999999*********************9999999755555456666665544444....2359**************************************9 PP

>> PF10014.4  Biofilm formation and stress response factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.088     6e+02      17      50 ..      15      51 ..       3      57 .. 0.76
   2 ?   10.6   0.0   3.5e-05      0.24     152     185 ..     365     398 ..     326     402 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.088
                -...EEEE-B--EEE-S----EEE-----EE--SSTT CS
   PF10014.4 17 g...yRkrrysrfiiepetkelerlehqpfvqskeyn 50
                +    R  r++ ++++++ +   ++e++p++q  e++
  MMETSP0890-20130614|1774_1 15 KmltRRVIRIGALTYRRHLSATSQVERSPYFQYPEVE 51
                2344788899999999999889999*******87765 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 3.5e-05
                 -EE---STTEEEEEETTTEEEEEEEEE-S-TT-- CS
   PF10014.4 152 arftllepldtllvdDervlHevtpikpkdpskp 185
                 + ++  e +d+++ dD+ +lH++tp +p+++++ 
  MMETSP0890-20130614|1774_1 365 VYTHFYEDGDAIISDDRAMLHSTTPFSPDTKTRI 398
                 45677899*******************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.60
# Mc/sec: 1833.21
//
Query:       MMETSP0890-20130614|1776_1  [L=823]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.4e-205  681.2   0.0     1e-204  681.0   0.0    1.1  1  PF02867.10 Ribonucleotide reductase, barrel domain
      8e-17   60.7   0.0    1.7e-16   59.6   0.0    1.6  1  PF00317.16 Ribonucleotide reductase, all-alpha domain
  ------ inclusion threshold ------
       0.15   12.3   0.0       0.41   11.0   0.0    1.7  1  PF03477.11 ATP cone domain


Domain annotation for each model (and alignments):
>> PF02867.10  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.0   0.0  2.2e-208    1e-204       1     537 []     245     783 ..     245     783 .. 0.98

  Alignments for each domain:
  == domain 1    score: 681.0 bits;  conditional E-value: 2.2e-208
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02867.10   1 lssCfvldsveDslesIfdtlkeaaklsksgGGvGlnlsklRakgskikgtggkssGivpflklfdataravdqgG.kRrGaaavylevwHpDieeflelKknegdeeerlrnlnisvwvpdlFmkrvekdedwtlfdpaeakkleelygeefeeeyekleeegkivkkkvkareLwkkilesaietGePyilfkDavNrknpnkhlgtIkssNlCtEivllsspseiavCnLasinLskfvkek..fdleklkevvrlavrfLdnvidlndypleeieksnkkkRkiGlGvmGladllaklgipydseealeladkifetiayaaieaSvelAkekgpfesfegskyskgilqidkleklieekskklekvkaaveeedweelrekikkyglrNsqltaiaPTgtiSliagttesiePifanvysrknlsgeflvvnpnllkelkklglwseelkeeilaekgsiqdikeipeeikelyktayeidqkklikmaaarqkfidqsiSktlflpedataedlkelylyawklGlKtityYl 537
                 l+sCf+l+ ++Ds+++I+dtlk++a++sk +GG+Gl++s++Ra gs i+gtgg+s+G+vp+l++fd+tar+vdqgG kR+Ga+a+y+e+wHpD+++flelKkn+g+ee+r+r+l++++w+pdlFm+rv++d+dw+l++p+e+++l+e +  efe++y ++e++++  +++vkar+Lw++il+++ietG+Pyil+kDa+N k+++ hlgtI++sNlC+Eiv+  +++e+avCnLas++L++fv+++  fd+++l++v+ +++++Ld+ id  +yp++e+e+snk++R++GlGv+Glad+++kl++p+ds ea++l+++ifeti++aa++aS++ A+e g +e++ gs++s+g lq d ++  ++  +++ e+  +++  +dw++lr +i+ yglrNs+l+a +PT+++++i g +e++eP+++n+y r+ ++gef+v n++l+++l +lglw+++l++e+++++gs+q+i+++p+++k+lykta+ei+q+ l+++aa+r++f+dqs+S++ f+ +++++ +l+  ++y+w +GlKt++yYl
  MMETSP0890-20130614|1776_1 245 LASCFLLGATQDSIRGIYDTLKNCASISKAAGGIGLSVSQVRAAGSRIRGTGGESNGLVPMLRVFDSTARYVDQGGgKRPGAIAAYIEPWHPDVFDFLELKKNHGKEERRARDLFYALWIPDLFMRRVKEDADWSLMCPDECPGLCESHSLEFERRYLAYEAQPSKIRRTVKARTLWRAILDAQIETGTPYILYKDACNSKSNHHHLGTIQCSNLCCEIVQFANTTEVAVCNLASLVLPSFVTKDgsFDFDALADVTIATTQALDATIDSATYPTQEAERSNKRHRPLGLGVQGLADAFLKLRLPFDSLEARQLNRAIFETIYFAALRASCDRARELGFYETYPGSPASRGLLQPDLWNSPLNGGNTSQEQLASSQSRWDWTQLRSDIQLYGLRNSLLVAPMPTASTAQIVGVNECFEPYTSNLYARRVKAGEFVVANRHLVQDLAQLGLWDDALRDELMRHEGSVQSIDRVPNDLKALYKTAWEIKQRVLVDLAADRGPFVDQSQSFNAFI-ATPDYHKLTAFHFYGWSRGLKTGMYYL 783
                 79*************************************************************************************************************************************************************************************************************************************************99*****************************************************************************************************************888777763334444444555*************************************************************************************************************************************.999***********************6 PP

>> PF00317.16  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   3.8e-20   1.7e-16       2      82 ..     165     242 ..     164     243 .. 0.93

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 3.8e-20
  PF00317.16   2 kltynalkvlearYllkdeng.eivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                 +l+y++ k+le++Yll+d +   i E+p q  mRvAl++    ++    ee  ++  +++dlm+s+k+++asPtl+ +Gt++
  MMETSP0890-20130614|1776_1 165 DLDYFGYKTLERSYLLRDPDDiSIRERPSQALMRVALGIWRGWRD----EECLAKSLRTFDLMASRKYIHASPTLFHSGTRN 242
                 689****************999******************97764....58888888***********************86 PP

>> PF03477.11  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     9e-05      0.41      33      90 .]      52     109 ..      34     109 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9e-05
  PF03477.11  33 deedaeelaeevekqledkkeegisteeIqdlvektli....ehgdydvaaayilyrdlrke 90 
                 + ++ + +a+++++ l +      +  e+++l++  ++    +h+dy+ +aa+i  ++lr+e
  MMETSP0890-20130614|1776_1  52 SFVKLDVVAQKAYEGLSA----HYDEAEVDELLASSAAalasRHPDYSRLAARIEISRLRRE 109
                 667788899*********....7777999999999999999***************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:01.29
# Mc/sec: 1528.84
//
Query:       MMETSP0890-20130614|1778_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       134  (0.00980105); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 250.53
//
Query:       MMETSP0890-20130614|1773_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   17.9   3.6     0.0079   15.7   2.5    2.2  1  PF14446.1 Prokaryotic RING finger family 1
  ------ inclusion threshold ------
      0.057   12.6   0.4       0.11   11.6   0.3    1.4  1  PF11051.3 Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.5   1.2e-06    0.0079      10      36 ..     557     583 ..     546     593 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.2e-06
   PF14446.1  10 vCgkklkdkddivvCpeCgapyHreCw 36 
                  C++ lk ++d+vvC+eC +p   +C 
  MMETSP0890-20130614|1773_1 557 TCNNHLKMGMDSVVCDECDLPESSDCR 583
                 6*******************9988886 PP

>> PF11051.3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.6e-05      0.11      40     111 ..     336     406 ..     330     409 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.6e-05
   PF11051.3  40 eelskelcekllpkqevtflnakcvvlsdilgkefak...kgfqlK.alAllfssFeevlllDaDnvplqnpdklF 111
                 ee +++lc +          ++k+++ +++l+ +  +   k++ l  a+  +fs F+ +l+lD  ++++  pd   
  MMETSP0890-20130614|1773_1 336 EETNQQLCGDDSD-----IKDIKPIYVDNFLPAKNDNsriKHYTLAvAMPFFFSNFQYILYLDMNSLLVGMPDFTI 406
                 4566666666666.....789************8888454444432134468***************999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.86
# Mc/sec: 1677.45
//
Query:       MMETSP0890-20130614|1777_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.28   10.6   0.0    1.5  2  PF13555.1 P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.1e-05      0.28      35      45 ..      22      32 ..      18      40 .. 0.87
   2 ?   -3.8   0.0      0.63   8.6e+03      32      37 ..      70      75 ..      69      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.1e-05
   PF13555.1 35 GKSTllDAiqt 45
                GKST++DA+ t
  MMETSP0890-20130614|1777_1 22 GKSTIFDAQET 32
                ********987 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.63
   PF13555.1 32 sGsGKS 37
                 + GKS
  MMETSP0890-20130614|1777_1 70 IETGKS 75
                578998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.90
# Mc/sec: 314.19
//
Query:       MMETSP0890-20130614|1779_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00073   19.2   0.0      0.015   14.9   0.0    2.4  1  PF03031.13 NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-06     0.015       5     126 ..      49     251 ..      46     276 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-06
  PF03031.13   5 LDLDetLvhsk............................sekdee..................e..ektkasvkkRPgldeFLkel.skayevviftass..keyadavldkldpkkklfkkrl.yresctlengkyvKdLsll......................................grdlskvvivDdsprsfelq.pdnlipiepf 126
                 LDLD+tL+h++                                 +                  +  ++t+  +++R g + +L +l + + +v + ta       ++a+ d+ d     + +++ ++ +  l++     +++l                                       +    k vi+Dd+p+++e+   d +  +++f
  MMETSP0890-20130614|1779_1  49 LDLDGTLFHMMpdgelpgniihvteavvplpegamqqlvA----KrtqnkcktaaenevlariDvdDQTRHVMAVRRGTHRLLASLrAAKVDVRVVTANLlgDVAVKALTDRED---ADIAAQVaTQAQNYLQQA---QNIDLSqeilkgwtgapdvgvtvvvdrspgakrlpddivdalrdDPRHTKLVILDDNPTAWEARaIDFIWLVPQF 251
                 9**********87777777777777777776666655551....0444556677777887776156889999999***********8888********9832333333333333...223333312222211111...222222223344677666666677777777766666666666643347788888888888877644445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:01.21
# Mc/sec: 883.29
//
Query:       MMETSP0890-20130614|1783_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-12   45.0   0.2      1e-11   44.6   0.2    1.3  1  PF03992.11 Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> PF03992.11  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.2   7.3e-16     1e-11       5      76 ..      16      86 ..      12      88 .. 0.93

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 7.3e-16
                EEEEEEEGGHHHHHHHHHHHHHHHHHTT-----EEEEEECTTSCEEEEEEEEESSHHHHHHHHTSHHHHHHH CS
  PF03992.11  5 vnefkvkpgaeeafeeafaeaaesllaeepGflgyellrstddpdevvvieeWeseaafrahlksphfkaah 76
                ++ +++++ + e+f+++ +  a+ + ++e G+ ++++l+++++ +++v++e++++ +a+  h  + h+ka++
  MMETSP0890-20130614|1783_1 16 IVILEIEESRVEKFRQVAEIDAKGS-RAEAGCYRFDVLQDKEQANKFVFYEVYKDDDAIAFHKTTSHYKAWA 86
                56678999999*******999999*.7*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 389.86
//
Query:       MMETSP0890-20130614|1785_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 166.70
//
Query:       MMETSP0890-20130614|1784_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-30  106.6   2.7    4.1e-30  105.0   1.9    1.8  1  PF09317.6  Domain of unknown function (DUF1974)
    4.8e-16   59.2   0.0    1.9e-15   57.2   0.0    2.1  2  PF02771.11 Acyl-CoA dehydrogenase, N-terminal domain
    2.5e-09   37.2   0.2    7.8e-09   35.6   0.1    1.8  1  PF00441.19 Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF09317.6  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   1.9     9e-34   4.1e-30       1     255 [.     436     712 ..     436     729 .. 0.78

  Alignments for each domain:
  == domain 1    score: 105.0 bits;  conditional E-value: 9e-34
   PF09317.6   1 iRCHPYvlkeleaaqsedkkealkaFdkalfkhigfvvsnalralvlgltggr...........lasap...vsgetkryyrqlsrlSaalAllaDlallvLGGeLKrkerlSARLgDvlsqLYlasavLkryedegrqeed..lplvewaledslakiekaldellaNfpnrava......vllrvlvfplgr...rvkkpsDklkrevAelllepse..ardrltagv.ylpedeedpvgrlekafkavleaeplekklkkaekkgklkkkkleelleeal 255
                 +RCHP++l+ +ea++++d ++a ++F   + + i++++s++ r+++lg+ +++           l ++p   +++ ++ + ++lsrl+a++A+ aD+all LGG LK  e+  +RL+D+l   +l  a+L +y ++   +++  + ++++al +  +++++al+ + aN p  +++      +l+r+ + p+g    + ++p+D+ +++vA+ll+++ +  a + l +g  y+++      + l  a+   lea++l  kl+k++++ + ++ +l +++e+ +
  MMETSP0890-20130614|1784_1 436 MRCHPHLLQVVEALEAND-DKAPSRFMLGVQSMIRHALSTLGRSMFLGIKESLsslfsfghlrkLGDSPqnsADAFIHYHEQRLSRLAANFAFAADMALL-LGGRLKFEEMFMGRLADALGATFLGYATLTHYAKHHATADAglRLVADHALLRLEKEAHEALRHAAANVPPMLLRfdfvasALIRMAIRPIGSlgtPDRAPTDAHTKQVADLLTTNASnyASTFLLDGSvYVSD---GIRKTLLDALPICLEADALTLKLRKENREPTSQEVELLNKAEA-M 712
                 8*****************.8****************************987641111111111134555776777788889*****************86.9*******************************99865554322567789999999***************65543111112689999999876433699***************98774355556666526655...44567889********************777776666655543.3 PP

>> PF02771.11  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   4.2e-19   1.9e-15      28     112 ..      70     155 ..      45     156 .. 0.86
   2 ?   -3.4   0.0       2.7   1.2e+04      56      89 ..     432     469 ..     429     476 .. 0.66

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 4.2e-19
                 HHT---HHHHHHHHH---TSTTS-TT-------HHHHHHHHHHHHHH--TTCHHHHHHHHCC.HHHHHH---HHHHHHHHHHHHCS CS
  PF02771.11  28 eeeefprelwrklaelGllgitvpeeyGGagldalelalvleelaradaglavalgvhsslv.apailrfGteeqkkkyLpklasg 112
                 e+++f +e+w  + ++G++g+ +p+e+GG g+++ ++  +l  l+ +++ l+++++v++sl+ ++++ ++Gt+eqk+ yLp la+g
  MMETSP0890-20130614|1784_1  70 ENKDFSEEVWHFMRRAGFMGLKIPKEWGGKGFSTAATSAILVKLGSVSSDLTSTVAVPNSLGpGELLVKYGTQEQKEYYLPLLADG 155
                 455899999**********************99999999999*******99999********559*******************98 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.7
                 ---.--.HHHHHHHHHHHHHH-..-TTCHHHHHHHHCC CS
  PF02771.11  56 Gag.ld.alelalvleelarad..aglavalgvhsslv 89 
                 G+g +    +l+ v+e+l + d  a+++ +lgv+s++ 
  MMETSP0890-20130614|1784_1 432 GQGlMRcHPHLLQVVEALEANDdkAPSRFMLGVQSMIR 469
                 67743367778888888888664467777888877664 PP

>> PF00441.19  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   1.7e-12   7.8e-09       3     139 ..     284     423 ..     282     435 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.7e-12
                 -...-HHHHHHHHHH--------HHHHHH.HHHHHHHH-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTS-HHHHHHHHHHHHHHHHHHHHHHHHH---GGG.B.TTSSHHHHHHHHTTTTT------ CS
  PF00441.19   3 GfavametlnheRlliaaaalglarrale.ealeyakqrkafgkplidfqlireklaemaaeleaarllvyraaealdagkpdsaeaslaKllaselaqevadeamqllGgrGy.a.eeyplerlyrdarvlrigeGtse 139
                 G++  +e l  +R +   a++++  + l   + +ya+ rk+f+ p+++f +i+e la +a +   + + +    +  d+++ +   +s++K   +e  ++ +++ m+++Gg+++ +   +   + y  ++++ + eG++ 
  MMETSP0890-20130614|1784_1 284 GWHMFVECLAEGRGVSLPAMAVAVGKGLGpAVGSYARARKQFKVPIAEFGGIQEALATIASDGYISLASTQLMNAVVDNHEAPMILSSIMKQNITERGRTMINKGMDIMGGAAIsMgPNNIAGNPYMSMPIAITVEGANI 423
                 9************987766666666666615569****************************9999888888888889999999*****************************952355557777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:02.99
# Mc/sec: 615.52
//
Query:       MMETSP0890-20130614|1787_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:01.24
# Mc/sec: 732.43
//
Query:       MMETSP0890-20130614|1788_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-39  132.8   8.8    1.7e-21   75.9   0.2    2.7  2  PF00575.18 S1 RNA binding domain
  ------ inclusion threshold ------
      0.058   13.0   3.4          2    8.0   0.2    2.8  2  PF02599.11 Global regulator protein family


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.2   2.5e-25   1.7e-21       3      74 .]      90     161 ..      88     161 .. 0.98
   2 !   59.6   2.1     3e-20   2.1e-16       5      71 ..     195     261 ..     192     264 .. 0.93

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 2.5e-25
                 STT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
  PF00575.18   3 ekGevvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74 
                 e+G+ ++GtV++v ++G f+d+g+  +g+++ise+ss+ ved++ev++vgd+v ++vlk+d+++k+i Ls+k
  MMETSP0890-20130614|1788_1  90 EIGASYEGTVVAVLSYGCFIDIGAQSDGLCHISELSSKFVEDINEVVSVGDTVTARVLKIDEKKKQIALSLK 161
                 79********************************************************************87 PP

  == domain 2    score: 59.6 bits;  conditional E-value: 3e-20
                 T-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEE CS
  PF00575.18   5 GevvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiL 71 
                  e ++G+V+ + ++GafV+++ gv+g+++is i+++rv++ e+ +++g++v+v+v++vd ++  + L
  MMETSP0890-20130614|1788_1 195 AEEIDGEVVTIKPFGAFVRIEDGVDGLVHISRIADERVNNVEDFVQIGQKVKVRVIDVDLDKVTLAL 261
                 5789*******************************************************99866655 PP

>> PF02599.11  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2    0.0035        24       8      29 ..     132     153 ..     131     161 .. 0.78
   2 ?    8.0   0.2    0.0003         2       9      33 ..     236     260 ..     233     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0035
  PF02599.11   8 vgEsIvIgddIeitvlevkggq 29 
                 ++E + +gd ++  vl++++++
  MMETSP0890-20130614|1788_1 132 INEVVSVGDTVTARVLKIDEKK 153
                 6899**************9554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0003
  PF02599.11   9 gEsIvIgddIeitvlevkggqVrlG 33 
                 ++ ++Ig+++++ v++v+ ++V l+
  MMETSP0890-20130614|1788_1 236 EDFVQIGQKVKVRVIDVDLDKVTLA 260
                 56689*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.96
# Mc/sec: 886.15
//
Query:       MMETSP0890-20130614|1791_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-20   71.1  18.0      5e-20   71.1  12.5    3.1  3  PF10252.4  Casein kinase substrate phosphoprotein PP28
    4.7e-10   38.6   1.6    9.8e-10   37.5   1.1    1.6  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
       0.03   13.2   0.2       0.03   13.2   0.1    2.9  4  PF07766.8  LETM1-like protein
      0.087   11.9   1.8        0.2   10.8   0.4    2.4  2  PF13297.1  Telomere stability C-terminal
        1.1    7.4   8.6        1.4    7.0   6.0    1.4  1  PF03063.15 Prismane/CO dehydrogenase family


Domain annotation for each model (and alignments):
>> PF10252.4  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   4.6         5   1.4e+04       8      18 ..      20      30 ..       8      70 .. 0.51
   2 !   71.1  12.5   1.8e-23     5e-20       1      80 [.      75     154 ..      75     158 .. 0.95
   3 ?   -2.1   2.3       1.3   3.7e+03       7      49 ..     160     204 ..     154     219 .] 0.55

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 5
   PF10252.4  8 kkrsqkakeie 18
                k+r+q  +e++
  MMETSP0890-20130614|1791_1 20 KARAQRRQESD 30
                22222222222 PP

  == domain 2    score: 71.1 bits;  conditional E-value: 1.8e-23
   PF10252.4   1 anPnrvkkkrsqkakeieeadkselsRrErEeiekqkakerymklhaeGKteearaDLaRLalireqReeaaarkeaeke 80 
                 anPn   +++ +kak++++++  el+RrE+Ee+ekq+a   y klhaeGKt+e +aD++RLa  r++Ree aa+++ + e
  MMETSP0890-20130614|1791_1  75 ANPNAEDRNKFKKAKDLHDSEAPELTRREKEELEKQRAADHYRKLHAEGKTDEYKADMERLAAARKRREELAAKQKSDTE 154
                 69********************************************************************9999887665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.3
   PF10252.4   7 kkkrsqkakeieeadkselsRrErEeiekqkakerymk..lhaeG 49 
                 k+ ++q++++++++d ++l  r   +++  + ke+ +k  l  +G
  MMETSP0890-20130614|1791_1 160 KHDAAQATQHSDDSDDEKLDSRTVKAMKPAQLKEALKKrgLSTQG 204
                 444555555566667777766666666666666654441233333 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   1.1   3.6e-13   9.8e-10       2      35 .]     184     217 ..     183     217 .. 0.94

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 3.6e-13
                 TT--HHHHHHHHHHTT------HHHHHHHHHHHH CS
  PF02037.22   2 skltVaeLKaeLkkrGLptsGkKaeLieRLkehl 35 
                 + ++ a+LK+ LkkrGL+t+G K+eL +RL+ ++
  MMETSP0890-20130614|1791_1 184 KAMKPAQLKEALKKRGLSTQGQKKELTDRLLAAI 217
                 68****************************9875 PP

>> PF07766.8  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.8       0.5   1.4e+03      96     124 ..      34      62 ..       6      73 .. 0.48
   2 ?    1.2   0.1     0.051   1.4e+02      36      53 ..      91     110 ..      78     119 .. 0.65
   3 ?   -2.0   0.1      0.47   1.3e+03     109     134 ..     140     157 ..     120     173 .. 0.43
   4 ?   13.2   0.1   1.1e-05      0.03     207     245 ..     173     210 ..     163     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.5
   PF07766.8  96 qkeeklkkllkvrkevakflqetleelal 124
                 + +e+++++ ++r   ++ l++ + ++++
  MMETSP0890-20130614|1791_1  34 EDSEEIEENEESRSMQMEALRSEVVQIEK 62 
                 22233444444444444444444333333 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.051
   PF07766.8  36 vakgke..LtrrEreqllrt 53 
                 ++++++  LtrrE+e l + 
  MMETSP0890-20130614|1791_1  91 LHDSEApeLTRREKEELEKQ 110
                 44443344******999754 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.47
   PF07766.8 109 kevakflqetleelalekkesiseee 134
                 k+         eela ++k+ ++++e
  MMETSP0890-20130614|1791_1 140 KR--------REELAAKQKSDTEQAE 157
                 22........2222222222222222 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 1.1e-05
   PF07766.8 207 kdDkaikrEgvesLsveeLqsAcraRGlralglseealr 245
                 +dD++++   v+++++++L++A + RGl   g ++e l 
  MMETSP0890-20130614|1791_1 173 SDDEKLDSRTVKAMKPAQLKEALKKRGLSTQGQKKE-LT 210
                 69*****************************99988.44 PP

>> PF13297.1  Telomere stability C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2   5.9e+03      15      23 ..      48      56 ..      41      63 .. 0.59
   2 ?   10.8   0.4   7.3e-05       0.2      14      44 ..     185     215 ..     179     219 .] 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.2
   PF13297.1 15 LgldrLKea 23
                + ++ L ++
  MMETSP0890-20130614|1791_1 48 MQMEALRSE 56
                445555554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.3e-05
   PF13297.1  14 aLgldrLKeaLaalGLKcGGtlqeRAaRLfl 44 
                 a+ + +LKeaL+++GL + G  +e  +RL +
  MMETSP0890-20130614|1791_1 185 AMKPAQLKEALKKRGLSTQGQKKELTDRLLA 215
                 667789**********************986 PP

>> PF03063.15  Prismane/CO dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.0   0.00051       1.4      56     146 ..     118     212 ..      10     218 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00051
                 HHHHCGGGSTTT--SHHHHHHHHHHHHHHHHHHSSHHHHHHHHH....HH.HHHCTC--.SCHHHHHHTTSHHHHHHHHHHCCHH----HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF03063.15  56 iakalfktltnvnfddeeklkalaealgieeelksieelakeva....ev.aledlskeeeedirslkellpkglkglyaehaivlggadeeivef 146
                 ++ a++kt  +++ d e++ +a +++ ++ ++ ks+ e a++++    ++ + +d s++e+ d r++k++ p++lk+  ++ +   +g+++e+++ 
  MMETSP0890-20130614|1791_1 118 KLHAEGKT-DEYKADMERLAAARKRREELAAKQKSDTEQAEKIKhdaaQAtQHSDDSDDEKLDSRTVKAMKPAQLKEALKKRGLSTQGQKKELTDR 212
                 33455566.778888888888888887777777666665555552222330344444455669**********************99999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1923  (0.140652); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:01.25
# Mc/sec: 419.84
//
Query:       MMETSP0890-20130614|1793_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-52  176.6   0.0    6.5e-52  176.4   0.0    1.0  1  PF01266.19 FAD dependent oxidoreductase
     0.0026   17.5   0.1        1.3    8.7   0.0    2.8  3  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.0   9.6e-56   6.5e-52       5     358 .]       1     359 [.       1     359 [. 0.86

  Alignments for each domain:
  == domain 1    score: 176.4 bits;  conditional E-value: 9.6e-56
                 E----HHHHHHHHHHHTT-EEEEEESSSTTSSCG.GGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHH.....HHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTTTEEEE-HHHHHHHSTTBT.TTT--EEE.ETTEEEEEHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTC..EE.EEEEES..EEEEEEEE----THHHHHCCGTCCTTEEEEEEEEEEEE-TCCHSCCCEEEEEEEECGGTSEEEEEET..TEEEE-.....EEE.SCEEESCBHHHH.HHHCCTHHHHHHHHHHHHHHSGGGGGSEEEEEEEEEEEE.ETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHHHH CS
  PF01266.19   5 iGgGivGlstAyeLarrglkVtllekgdiasgaS.grngglihagllkerdprllrlalesldllrel.....aaetgidvdfrrtgvldlasdeeeleelerlaerarangldvellsaeevrereplls.pdlkgglf.ypddgqvdpaklvkalaraaeelGveiiegtkVtglereggr..vsgvetedgs.iradkvvlAaGawsskllkllgldlpirpvrgqvlvtepltdelaaavilgpvavldargvfvlpre..gevlvg.....ttd.grldrgataeessgedvdvdlevdelleaaakllpqlkdaeilrawaGlrpv.tpdglpvigevpevpglyvatGhsghGftlapaaGkllael 358
                 iGgG++G s+ ++La ++++ +++e++  ++ +S + ++g i+++   ++ ++ + l+ ++ + lr+       +e+ +d+ fr++g+l l +d ++l+++++++++a a+g+  ++l+++++  ++p+l+ +dl+gg f   d+g++dp +l++     a +lG +++eg +  +l+ + ++  v   e++dg+ ++a+  vl+aGa s+kll+l      + p +++v+v++  + ++ ++    p  v d +gv+++  +  g++++g     + d  ++d + + e+  +e+ d+ l  + +++a+a+++p++++ ++l+aw+Gl+   + d++ +ig++p++++l++atG+sghG++++p++G+++ael
  MMETSP0890-20130614|1793_1   1 IGGGMMGTSVGLQLALANRRALIIERDASGQSSSaSYSAGGIRQQ---FSLEENVALSVYGAEWLRNGlreavGTEAFVDPIFRENGYLTLGTDRQSLKSAQQIQRKAGARGI--DFLESKALTTKFPWLRtDDLAGGNFgRCDEGYFDPNALLVSTRNGAIRLGTDFVEG-TCINLKFDQDKkrVLYCELSDGTrVEAEYFVLTAGAASRKLLDLE-----VIPKKRSVFVVDCNDSNSPPPN--TP-LVIDPSGVYFRADNhqGRFVCGvsppsSFDdPDIDDPHNFEQW-REQPDFALFEQVIWPAMAHRVPAFESLKLLHAWSGLYEIhLLDHNALIGPHPDFSNLILATGFSGHGLQHSPGVGRAIAEL 359
                 9**************************888866656789******...888899**********999533333566678899*****************99888888888877..8**********************99778999*************************.999998888887755599****99****************66666.....89**********9999996666..22.3333368888888897777777999764444666666666666.54555555588899*****************************************************************96 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0018        13       5      42 ..       1      43 [.       1     117 [. 0.78
   2 !    8.7   0.0   0.00019       1.3      74     127 ..     163     211 ..     133     234 .. 0.74
   3 ?   -0.8   0.0      0.16   1.1e+03     110     129 ..     332     352 ..     329     370 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0018
                E----HHHHHHHHHHHTTSEEEEE.....CSSSSSTBTSGGHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx RF
   PF07992.9  5 iGgGpaGlsaakdlaqkglkvali.....ekeggtcvnrgclp 42
                iGgG+ G+s  ++la ++ + ++i     +++   ++  g++ 
  MMETSP0890-20130614|1793_1  1 IGGGMMGTSVGLQLALANRRALIIerdasGQSSSASYSAGGIR 43
                9**************9999999996655544444555555554 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00019
                 EEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----.TGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
   PF07992.9  74 illeknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtl.gip 127
                 + +e  +++++ ++      ++ v + e ++g ++++++ v+  Ga++r+l +++
  MMETSP0890-20130614|1793_1 163 F-VEGTCINLKFDQD-----KKRVLYCELSDGTRVEAEYFVLTAGAASRKLlDLE 211
                 3.6666677744444.....5567788889999************9999986444 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.16
                 ESEEEE---.-B----TGCCH CS
                 xxxxxxxxx.xxxxxxxxxxx RF
   PF07992.9 110 ydklviAtG.arprtlgipgv 129
                 + +l++AtG + +     pgv
  MMETSP0890-20130614|1793_1 332 FSNLILATGfSGHGLQHSPGV 352
                 5689*****665555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:01.12
# Mc/sec: 799.49
//
Query:       MMETSP0890-20130614|1790_1  [L=901]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-05   23.9   0.0    0.00021   21.0   0.0    2.7  2  PF10363.4  Protein of unknown function (DUF2435)
  ------ inclusion threshold ------
        2.3    8.4  12.6        3.2    7.9   0.1    5.2  5  PF02985.17 HEAT repeat
        8.2    6.4   9.3        2.6    8.0   0.1    3.6  4  PF09179.6  TilS substrate binding domain


Domain annotation for each model (and alignments):
>> PF10363.4  Protein of unknown function (DUF2435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.6e-08   0.00021      40      87 ..     621     668 ..     563     674 .. 0.78
   2 ?   -2.5   0.0      0.97   4.4e+03      20      55 ..     797     831 ..     794     853 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.6e-08
   PF10363.4  40 vadvpkilelllsqlkdedsfvYLnaikgLaalaevdpeevlktLvee 87 
                   d + + e ++++l+d++s+vYL+a + L ala+ +p   l+ ++e+
  MMETSP0890-20130614|1790_1 621 ADDWKPVAEACIEALADSESYVYLAATHSLVALADAHPIALLAFFAEC 668
                 4566789999****************************9887766655 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.97
   PF10363.4  20 vrahgLllLrrlvekksaedvadvpkilelllsqlk 55 
                  ra ++l  rrl+e + + +++++p+ l ++ ++l+
  MMETSP0890-20130614|1790_1 797 RRAAAFLG-RRLIEGNARAAMLSQPRPLAIMCKKLR 831
                 55555544.677777777777777777777766654 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.44     2e+03      13      27 ..     232     246 ..     231     248 .. 0.89
   2 ?    5.1   0.1    0.0058        27       4      29 ..     630     655 ..     627     657 .. 0.90
   3 ?   -1.3   0.1      0.63   2.9e+03       1      13 [.     661     673 ..     661     675 .. 0.87
   4 ?    7.9   0.1   0.00069       3.2       8      29 ..     728     750 ..     726     752 .. 0.90
   5 ?   -2.0   0.0       1.1   4.9e+03       9      16 ..     876     883 ..     876     883 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.44
                 SHHHHHHHHHHHHHH CS
  PF02985.17  13 speVReaAaeaLgal 27 
                 +p V ++ a+aL+a+
  MMETSP0890-20130614|1790_1 232 APAVQRNIANALAAI 246
                 799*********997 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0058
                 HHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   4 lllkllnDpspeVReaAaeaLgalae 29 
                 +++++l D++  V  aA+ +L+ala+
  MMETSP0890-20130614|1790_1 630 ACIEALADSESYVYLAATHSLVALAD 655
                 68899*******************96 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.63
                 HHHHHHHHHTSSS CS
  PF02985.17   1 llPlllkllnDps 13 
                 ll ++ ++l D++
  MMETSP0890-20130614|1790_1 661 LLAFFAECLDDED 673
                 688999*****98 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00069
                 HHTSS.SHHHHHHHHHHHHHHHH CS
  PF02985.17   8 llnDp.speVReaAaeaLgalae 29 
                  l+Dp + + R+aA++aL++la 
  MMETSP0890-20130614|1790_1 728 SLQDPnDSRARCAAFSALADLAA 750
                 699******************97 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 1.1
                 HTSSSHHH CS
  PF02985.17   9 lnDpspeV 16 
                 +nDp++ V
  MMETSP0890-20130614|1790_1 876 MNDPNWLV 883
                 79****88 PP

>> PF09179.6  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00057       2.6       3      44 ..     167     208 ..     166     214 .. 0.91
   2 ?   -3.3   0.0       1.9   8.5e+03      14      26 ..     275     287 ..     272     290 .. 0.81
   3 ?   -3.6   0.0       2.3   1.1e+04      16      31 ..     510     526 ..     509     527 .. 0.81
   4 ?    2.1   0.7      0.04   1.8e+02      11      54 ..     690     732 ..     686     741 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00057
   PF09179.6   3 ieaLaalsparqrrlLRrwLaqlglpmPsqaqleeilrqllr 44 
                 +++L + s+++++r+ R  ++ ++++  ++ +l+++l + +r
  MMETSP0890-20130614|1790_1 167 FANLHQVSAHWCARAARELFQVRNITKTTRIHLAKLLSDTAR 208
                 68999*******************************988765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.9
   PF09179.6  14 qrrlLRrwLaqlg 26 
                 ++++ R +La++g
  MMETSP0890-20130614|1790_1 275 RANAARAALARFG 287
                 7899999999986 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 2.3
   PF09179.6  16 rlLRrwLaqlgl.pmPs 31 
                 r+LR  L++l++ ++P 
  MMETSP0890-20130614|1790_1 510 RVLRGMLSALEIlSSPA 526
                 899*9999998877775 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.04
   PF09179.6  11 parqrrlLRrwLaqlglpmPsqaqleeilrqllrakpdaqpqlp 54 
                  ar   +L ++++++g  +P +  l + lr++++a+p  ++q p
  MMETSP0890-20130614|1790_1 690 QARLTEALSHAIRRRGDAAPAYVKLLA-LRLVIAARPYNSLQDP 732
                 677778999******************.999**99998877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.22u 0.34s 00:00:01.56 Elapsed: 00:00:00.88
# Mc/sec: 2453.54
//
Query:       MMETSP0890-20130614|1794_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   13.6   3.9       0.38   10.3   0.3    2.6  2  PF09548.5 Stage III sporulation protein AB (spore_III_AB)
        3.8    7.5  15.1        8.1    6.4   1.2    5.1  5  PF04891.7 NifQ


Domain annotation for each model (and alignments):
>> PF09548.5  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   5.5e-05      0.38      72     144 ..     227     297 ..     181     305 .. 0.83
   2 ?    3.6   0.1    0.0066        45      83     132 ..     505     557 ..     475     575 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.5e-05
   PF09548.5  72 kvaerlekeegetvaeaweealeellketaLkkedieiLlelgksLGesdveeqqkiielaleeLekeeeeae 144
                 ++ e+l+++ g + ++a+e  l +   + +L ke++  + elg+ LG sd e+ q    l+   +++++e a 
  MMETSP0890-20130614|1794_1 227 TMLEKLRESLGLSKQKAIEMHLAT--FQNELAKENRGDMEELGTILGLSDTEKEQAAAGLTRDLFKAALEIAI 297
                 566778888888888888888877..566799*************************9999999999888776 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0066
   PF09548.5  83 etvaeaweealeell...ketaLkkedieiLlelgksLGesdveeqqkiiela 132
                  ++++ +++++ +     +++ L+++  + L elg+ LG    e++    + a
  MMETSP0890-20130614|1794_1 505 AQFSDMFQNSVADAMaqcTNLTLREKYAAKLVELGERLGLDQAEQKAAKQKAA 557
                 45566666666554422267789999999999999999987777765444444 PP

>> PF04891.7  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1    0.0051        35     100     132 ..     231     263 ..     221     264 .. 0.90
   2 ?    1.0   0.1     0.053   3.6e+02      12      76 ..     257     321 ..     253     350 .. 0.81
   3 ?   -1.0   0.0      0.23   1.6e+03       7      52 ..     398     443 ..     393     458 .. 0.74
   4 ?    6.4   1.2    0.0012       8.1      14      98 ..     481     567 ..     475     572 .. 0.78
   5 ?    1.5   0.1     0.039   2.7e+02      19      76 ..     674     732 ..     666     756 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0051
   PF04891.7 100 HLWqdLgLrsraelsallerhfpaLaakNtrdm 132
                  L + LgL+++++++  l+++ ++La++N+ dm
  MMETSP0890-20130614|1794_1 231 KLRESLGLSKQKAIEMHLATFQNELAKENRGDM 263
                 57789**************************99 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.053
   PF04891.7  12 eeaeagkaalaealGlsaeelaallarlfpaalealaaealklaeeleeereeeeedlralLlah 76 
                 +e++ + ++l + lGls++e ++  a l+++  +a+   a k+  ++++ ++e++++l++ ++++
  MMETSP0890-20130614|1794_1 257 KENRGDMEELGTILGLSDTEKEQAAAGLTRDLFKAALEIAIKTVIDQSDVSTEQIDNLKQTMMQN 321
                 56666777888889999999999888888888888888888889999999999999999999876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.23
   PF04891.7   7 lavaleeaeagkaalaealGlsaeelaallarlfpaalealaaeal 52 
                 l +al+  ++++++la+ l ++a++++ ll+++  + le++ a+++
  MMETSP0890-20130614|1794_1 398 LRSALAIDRSDAESLARLLEIDAQAVNVLLKQVLMSRLESAVATNN 443
                 6677777888999999999999999999999999966666655533 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0012
   PF04891.7  14 aeagkaalaealGlsaeelaallarlfp..aalealaaealklaeeleeereeeeedlralLlahrstdseearwlaaivAraalee 98 
                 ++++  ++++ lGl++++++ lla++f    + + ++a+a+ ++ +l+e+ +++  +l + L  ++++++++++  a++v +aal++
  MMETSP0890-20130614|1794_1 481 QKNELDQAQQILGLTTAQVTPLLAAQFSdmFQNSVADAMAQCTNLTLREKYAAKLVELGERLGLDQAEQKAAKQKAASLVLEAALHR 567
                 455667788899****************54334445555556666777788888888999999999999999999999999998875 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.039
   PF04891.7  19 aalaealGlsaeelaallarlfp.aalealaaealklaeeleeereeeeedlralLlah 76 
                  +l++ lGl+++++a+l++++    + + ++ + +k + +l+++++e +++l+a L a+
  MMETSP0890-20130614|1794_1 674 IRLPQILGLTPAATAKLRRNVGLqLVFRLCESALPKNNGQLDTAEAELIAKLEAALDAD 732
                 5788999************9998445566666667777777777777778887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.19u 0.45s 00:00:01.64 Elapsed: 00:00:01.29
# Mc/sec: 1707.17
//
Query:       MMETSP0890-20130614|1796_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-07   30.0  24.7    0.00023   20.6   2.8    5.8  6  PF13414.1  TPR repeat
    6.6e-06   25.8  17.0      0.021   14.6   0.4    4.9  6  PF13424.1  Tetratricopeptide repeat
     0.0061   16.2  20.7       0.22   11.3   0.1    5.8  7  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   14.7   8.1        3.9    7.3   0.0    5.3  5  PF13181.1  Tetratricopeptide repeat
       0.04   13.4  15.6        1.8    8.1   0.0    5.7  6  PF00515.23 Tetratricopeptide repeat
      0.086   12.5   3.3         10    6.0   0.0    4.1  3  PF13176.1  Tetratricopeptide repeat
       0.21   11.3   2.3       0.41   10.4   0.5    2.4  2  PF13769.1  Virulence factor


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.8   1.2e-07   0.00023       2      65 ..      59     139 ..      58     143 .. 0.83
   2 !   14.3   0.7   1.1e-05     0.021       7      68 ..     116     184 ..     116     185 .. 0.86
   3 ?   -1.6   0.0         1     2e+03      52      65 ..     332     345 ..     325     349 .. 0.71
   4 ?    0.7   0.0      0.19   3.8e+02      10      39 ..     393     423 ..     388     439 .. 0.82
   5 !    7.8   0.9    0.0012       2.2      18      54 ..     476     515 ..     462     517 .. 0.82
   6 ?    2.2   0.0     0.066   1.3e+02      32      52 ..     521     541 ..     513     548 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.2e-07
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnae..................lyynlAlaylklgkdyeeAledyekAl 65 
                  Ae+ k  G  + k++ + eAi++y+kAlel ++  +                  + +n Al+ lkl + +  A   + + l
  MMETSP0890-20130614|1796_1  59 SAESIKSVGSDYVKKNLWREAIAEYDKALELLSKEKSkisadyesellaekcelaCRNNKALCALKLMD-WSLAKLFCAEGL 139
                 58899999**********************97654444566688899999*****************95.678876666655 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.1e-05
   PF13414.1   7 kelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 ++++ +++k+ d+  A  ++ ++l+ +        ++ a+l++++++a l +g+  + A++   +Ale+ 
  MMETSP0890-20130614|1796_1 116 NNKALCALKLMDWSLAKLFCAEGLQVQerakvpdaSSKAKLLFRRGQAQLGNGE-ARNAVDSMAQALEIE 184
                 68999********************965555543355688*************6.69**********985 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1
   PF13414.1  52 kdyeeAledyekAl 65 
                 ++y++A+ +++++ 
  MMETSP0890-20130614|1796_1 332 EHYQKAASHLDMCW 345
                 46777777777765 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.19
   PF13414.1  10 GnalfkegdydeAieayekAleldpnnae.l 39 
                 G   +++++yd A +++    +l   n++ +
  MMETSP0890-20130614|1796_1 393 GHSMLRANQYDPARAYLIAFAQLATANPIaA 423
                 7778999999999999999999998888754 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0012
   PF13414.1  18 dydeAieayekAleldpnnae...lyynlAlaylklgkdy 54 
                 d d A++a  kAl + + +     +++nlA +y  ++ +y
  MMETSP0890-20130614|1796_1 476 DRDMALDAALKALNIAETHEHkraAHNNLAFLYGSKWSQY 515
                 7799***********988755678*********8877555 PP

  == domain 6    score: 2.2 bits;  conditional E-value: 0.066
   PF13414.1  32 ldpnnaelyynlAlaylklgk 52 
                  d + a l++ l+++++ l +
  MMETSP0890-20130614|1796_1 521 QDQDLALLHSSLSQCFQALHE 541
                 5778899**********9975 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00065       1.3      11      37 ..      66      92 ..      59     101 .. 0.84
   2 !   14.6   0.4   1.1e-05     0.021       5      78 .]     112     186 ..     108     186 .. 0.89
   3 ?   -4.2   0.0         7   1.4e+04      42      48 ..     333     339 ..     329     344 .. 0.47
   4 ?   -1.6   0.0       1.2   2.3e+03      56      69 ..     396     409 ..     390     416 .. 0.77
   5 !   10.6   0.9   0.00018      0.36       6      58 ..     462     510 ..     455     517 .. 0.83
   6 ?   -1.7   0.0       1.3   2.5e+03       2      19 ..     523     540 ..     519     544 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00065
   PF13424.1 11 lalvlrrlgdydeAlelyekalellre 37
                 +  + ++  + eA++ y kalell++
  MMETSP0890-20130614|1796_1 66 VGSDYVKKNLWREAIAEYDKALELLSK 92
                5677889999*************9765 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.1e-05
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrel..gddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                  ++ nn al+ ++l d+  A  ++ + l++++++  +d++   a++l+  ++++l  g+   A++   +Alei e+
  MMETSP0890-20130614|1796_1 112 LACRNNKALCALKLMDWSLAKLFCAEGLQVQERAkvPDAS-SKAKLLFRRGQAQLGNGEARNAVDSMAQALEIEEQ 186
                 5789**************************5555226666.78******************************875 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 7
   PF13424.1  42 hpdtara 48 
                 h++ a +
  MMETSP0890-20130614|1796_1 333 HYQKAAS 339
                 3333333 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.2
   PF13424.1  56 ylalgdydeAleyl 69 
                  l++++yd A++yl
  MMETSP0890-20130614|1796_1 396 MLRANQYDPARAYL 409
                 56788899999887 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.00018
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlyla 58 
                 +++  +a + rr  d d Al+   kal+++    ++h     a nnla ly  
  MMETSP0890-20130614|1796_1 462 DAYVAIASASRRIDDRDMALDAALKALNIA----ETHEHKRAAHNNLAFLYGS 510
                 6888999999*******************8....4555556799999999975 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 1.3
   PF13424.1   2 pdlatilnnlalvlrrlg 19 
                 +dla +++ l +++++l+
  MMETSP0890-20130614|1796_1 523 QDLALLHSSLSQCFQALH 540
                 456666666666666554 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0004      0.79       8      30 ..      67      89 ..      60      92 .. 0.87
   2 !   11.3   0.1   0.00011      0.22       1      32 [.     154     185 ..     154     187 .. 0.94
   3 ?   -3.5   0.1       6.4   1.2e+04      17      23 ..     217     223 ..     214     226 .. 0.51
   4 ?   -1.7   0.0       1.7   3.3e+03      16      23 ..     333     340 ..     331     342 .. 0.51
   5 ?    0.3   0.0      0.39   7.6e+02       8      24 ..     393     409 ..     389     416 .. 0.87
   6 !    6.7   0.1    0.0035       6.9       2      34 .]     462     494 ..     461     494 .. 0.92
   7 ?   -3.6   0.1       6.8   1.3e+04       3      11 ..     500     508 ..     499     508 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0004
                HHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  8 GlayyklgdyeeAleafekAlel 30
                G  y k++ + eA++ ++kAlel
  MMETSP0890-20130614|1796_1 67 GSDYVKKNLWREAIAEYDKALEL 89
                6678899999************9 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a++l+++G+a + +g+   A++ + +Ale++ 
  MMETSP0890-20130614|1796_1 154 AKLLFRRGQAQLGNGEARNAVDSMAQALEIEE 185
                 789**************************976 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 6.4
                 HHHHHHH CS
  PF07719.12  17 yeeAlea 23 
                 +++A+++
  MMETSP0890-20130614|1796_1 217 LQKARKL 223
                 4555554 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.7
                 -HHHHHHH CS
  PF07719.12  16 dyeeAlea 23 
                 +y++A+ +
  MMETSP0890-20130614|1796_1 333 HYQKAASH 340
                 45555444 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.39
                 HHHHHHTT-HHHHHHHH CS
  PF07719.12   8 GlayyklgdyeeAleaf 24 
                 G + +++++y+ A++++
  MMETSP0890-20130614|1796_1 393 GHSMLRANQYDPARAYL 409
                 788999*******9996 PP

  == domain 6    score: 6.7 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+ +++ a ++ +d + Al+a  kAl ++ ++
  MMETSP0890-20130614|1796_1 462 DAYVAIASASRRIDDRDMALDAALKALNIAETH 494
                 689999**********************99875 PP

  == domain 7    score: -3.6 bits;  conditional E-value: 6.8
                 HHHHHHHHH CS
  PF07719.12   3 alynlGlay 11 
                 a++nl+ +y
  MMETSP0890-20130614|1796_1 500 AHNNLAFLY 508
                 899**9988 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.062   1.2e+02      12      30 ..      71      89 ..      70      91 .. 0.83
   2 ?    1.6   0.0      0.14   2.7e+02       4      26 ..     115     137 ..     112     144 .. 0.82
   3 ?    7.3   0.0     0.002       3.9       1      31 [.     154     184 ..     154     186 .. 0.94
   4 ?   -1.5   0.0       1.3   2.5e+03      13      24 ..     398     409 ..     393     416 .. 0.65
   5 ?    2.6   0.0     0.064   1.3e+02       3      32 ..     463     492 ..     461     494 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.062
                HHTT-HHHHHHHHH---HH CS
   PF13181.1 12 rqlGdydkAkeylekalel 30
                 +++ + +A++ + kalel
  MMETSP0890-20130614|1796_1 71 VKKNLWREAIAEYDKALEL 89
                56677789*********97 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.14
                 TTT---HHHHTT-HHHHHHHHH- CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylek 26 
                 ++n++++ ++l+d+++Ak +  +
  MMETSP0890-20130614|1796_1 115 RNNKALCALKLMDWSLAKLFCAE 137
                 6799*************977665 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.002
                 ---TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelk 31 
                 ak+++++G++ + +G+  +A  ++ +ale+ 
  MMETSP0890-20130614|1796_1 154 AKLLFRRGQAQLGNGEARNAVDSMAQALEIE 184
                 5899*************************96 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.3
                 HTT-HHHHHHHH CS
   PF13181.1  13 qlGdydkAkeyl 24 
                   ++yd A +yl
  MMETSP0890-20130614|1796_1 398 RANQYDPARAYL 409
                 445666666665 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.064
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ay +++++ r   d d A+ +  kal ++ 
  MMETSP0890-20130614|1796_1 463 AYVAIASASRRIDDRDMALDAALKALNIAE 492
                 8999*********************98875 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00094       1.8       8      30 ..      67      89 ..      60      92 .. 0.86
   2 ?    5.0   0.1     0.009        18       4      31 ..     115     142 ..     113     144 .. 0.89
   3 ?    5.3   0.1    0.0072        14       1      32 [.     154     185 ..     154     187 .. 0.92
   4 ?   -2.4   0.0       1.9   3.8e+03      22      27 ..     332     337 ..     332     341 .. 0.79
   5 ?    1.6   0.0       0.1     2e+02       2      33 ..     462     493 ..     461     494 .. 0.81
   6 ?   -0.3   0.1      0.42   8.2e+02       3      12 ..     500     509 ..     499     511 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00094
                HHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  8 GnaylklgkydeAleyyekALel 30
                G  y k++ + eA++ y+kALel
  MMETSP0890-20130614|1796_1 67 GSDYVKKNLWREAIAEYDKALEL 89
                6668999999************9 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.009
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALeln 31 
                  +n++++ lkl ++  A  ++ + L+++
  MMETSP0890-20130614|1796_1 115 RNNKALCALKLMDWSLAKLFCAEGLQVQ 142
                 59***************99999998875 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 ak l+++G+a+l +g+   A++   +ALe+++
  MMETSP0890-20130614|1796_1 154 AKLLFRRGQAQLGNGEARNAVDSMAQALEIEE 185
                 789*******************9999999976 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 1.9
                 HHHHHH CS
  PF00515.23  22 eyyekA 27 
                 e+y+kA
  MMETSP0890-20130614|1796_1 332 EHYQKA 337
                 789998 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 +a+  ++ a ++  + d Al++  kAL + ++
  MMETSP0890-20130614|1796_1 462 DAYVAIASASRRIDDRDMALDAALKALNIAET 493
                 56777777778888899**********98876 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 0.42
                 HHHHHHHHHH CS
  PF00515.23   3 alynlGnayl 12 
                 a++nl+ +y 
  MMETSP0890-20130614|1796_1 500 AHNNLAFLYG 509
                 9******996 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0052        10       9      30 ..      70      91 ..      64      98 .. 0.81
   2 ?    1.4   0.1      0.15     3e+02       2      33 ..     157     188 ..     156     191 .. 0.83
   3 ?    2.5   0.1      0.07   1.4e+02       1      32 [.     463     494 ..     463     498 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0052
   PF13176.1  9 ysrlgdyekAielyeraLaltk 30
                y++ + +++Ai  y +aL+l +
  MMETSP0890-20130614|1796_1 70 YVKKNLWREAIAEYDKALELLS 91
                899999**********997654 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.15
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpl 33 
                 l++ ++++   g+ ++A++   +aL++++  l
  MMETSP0890-20130614|1796_1 157 LFRRGQAQLGNGEARNAVDSMAQALEIEEQLL 188
                 56778999999************999987765 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdp 32 
                 a++++a++ +r  d++ A+++  +aL ++++ 
  MMETSP0890-20130614|1796_1 463 AYVAIASASRRIDDRDMALDAALKALNIAETH 494
                 799****************9998877776655 PP

>> PF13769.1  Virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00021      0.41      40      83 ..      64     107 ..      36     109 .. 0.83
   2 ?   -2.9   0.0       2.9   5.7e+03      50      74 ..     158     182 ..     143     184 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00021
   PF13769.1  40 akdsdnylaerkwaepgeryGdleeiaeevaeeieaaYdeerLk 83 
                 ++   +y+++  w e +++y++  e+ ++++++i+a+Y++e L+
  MMETSP0890-20130614|1796_1  64 KSVGSDYVKKNLWREAIAEYDKALELLSKEKSKISADYESELLA 107
                 455678**********************************9887 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.9
   PF13769.1  50 rkwaepgeryGdleeiaeevaeeie 74 
                 +++ + +  +G+ ++ ++++a+++e
  MMETSP0890-20130614|1796_1 158 FRRGQAQLGNGEARNAVDSMAQALE 182
                 3445555667888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.62s 00:00:01.34 Elapsed: 00:00:00.80
# Mc/sec: 1749.34
//
Query:       MMETSP0890-20130614|1800_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   17.7   0.7     0.0026   17.7   0.5    1.9  2  PF06780.6 Erp protein C-terminus


Domain annotation for each model (and alignments):
>> PF06780.6  Erp protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.5   1.9e-07    0.0026      60     131 ..     149     222 ..     120     231 .. 0.80
   2 ?   -3.5   0.0      0.67   9.2e+03     107     120 ..     244     257 ..     235     271 .. 0.50

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.9e-07
   PF06780.6  60 eeeeelkkllkeLedardelRtklkegnkky..tkeneeklkekvkvseikeDLeklkskLeevkeYlkdkdnf 131
                  e ++l   l++ + a ++ Rt  + +++++  ++++++klk++  +s +++DL  l+s+Le+++  +k  d+ 
  MMETSP0890-20130614|1800_1 149 SETKRLTLSLQDTKIAAQNARTSAQASERRMhsAQQDTQKLKHNFLLSALHQDLAALHSSLEQIQSQFKHYDDA 222
                 24445555556666667999****9999988789999***************************9998887765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.67
   PF06780.6 107 ikeDLeklkskLee 120
                 i +  ++l ++L++
  MMETSP0890-20130614|1800_1 244 ITKAANELTKHLND 257
                 33333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1648  (0.120538); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.43s 00:00:01.21 Elapsed: 00:00:00.72
# Mc/sec: 1151.58
//
Query:       MMETSP0890-20130614|1802_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-10   39.7   0.0    5.4e-10   39.0   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    2.6e-07   30.6   0.2      1e-06   28.7   0.0    1.9  2  PF12697.2  Alpha/beta hydrolase family
    3.6e-05   23.2   0.0    0.00017   20.9   0.0    2.0  2  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.2e-13   5.4e-10       1     142 []     170     375 ..     170     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.2e-13
   PF12695.2   1 lvvlvhGaggdssayeplaealakrgfavvavdlpghgasegaa.........aakrvl...........aadll..dleriilvGhSlGGgvalelagrd.drvkglvllapf..........pdgedlakltl......................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                 +++++hG+++ + +  +        g++  ++d  g+g s+g           +    +           +         +++l+G+S+G+ +al++  r  ++++ lv+ ++f             +++++ ++                                      p l+ihG +D+++ p++ ++l++ ++++++ ++ + ++H+
  MMETSP0890-20130614|1802_1 170 TLIYLHGNASCRVEALTALTLCCTLGLSLCSFDCAGSGHSDGDYvslgyyeadD---CVaiirslrrrleKS--SqsSQFKYGLWGRSMGAVTALLYNIRKaPDASCLVVDSAFssldqlcrdlV--SKVSQRKIpraaiavalrqvrtsvkyrtrfdmrdcdalagvpsclvPALFIHGREDDFIFPTHTDNLFASYGSKHKSLLTPPGNHN 375
                 58999**999888877777788888**************977776777775542...444456666555422..1334449***************99988888888888888755554443220..3333333366666778888888999999999999999999999*****************************99999999999996 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.3e-10     1e-06       2     215 ..     172     374 ..     171     378 .. 0.67
   2 ?   -1.0   0.0      0.27   1.2e+03      95     150 ..     471     526 ..     459     583 .. 0.60

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.3e-10
                 EE------------HHHHHHT.TTSEEEEE-----------S....S--HHHHHHHHHHHHHH--.......--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------H..HHHTT--...S-EEEEE-----HHHHHHHHHHHHHST..TEEEEE---SSS CS
   PF12697.2   2 vllHGlggsaeswrplaeaLa.agyrvvapDlpGhGrSdrpp.dydpdtledlaadlaalldalgl......rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlr..ealarld...vPvlviageaDrvvppeearrlaealp..garvvvlpgagH 215
                 + lHG+ +   +  + + + +  g    ++D  G G Sd++  + +++  +d +a ++ l ++l         ++ l+G S+G+++al++  r   + + lv+ +++            ++l r+l++        ++ r++ r++ +  l+++ ++    +        ++ d+r  +ala ++   vP+l+i+g++D+++ p + + l +  +  ++++ + p ++H
  MMETSP0890-20130614|1802_1 172 IYLHGNASCRVEALTALTLCCtLGLSLCSFDCAGSGHSDGDYvSLGYYEADDCVAIIRSLRRRLEKssqssqFKYGLWGRSMGAVTALLYNIRKAPDASCLVVDSAFS-------S--LDQLCRDLVSK-------VSQRKIPRAAIAVALRQVRTS----VKYR-----TRFDMRdcDALAGVPsclVPALFIHGREDDFIFPTHTDNLFASYGskHKSLLTPP-GNH 374
                 6788888888777777777753699999************88558889899999999999999888998875589***************998666688888888888.......3..23455555543.......233333333332222222222....2211.....223333225555554455************9998888888765442244555555.555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.27
                 EEE------STT---TTHHHHHHHHHH----....--....H..HHHHH-----HHHHHH CS
   PF12697.2  95 vlidppgplpasalrpagpsllrrllagraaalrdla....arafarlfdgdelealvra 150
                  l+ p+ +      ++ +++++r+ ++ ++++l  ++    ++ +++ +++d+ +  +r+
  MMETSP0890-20130614|1802_1 471 YLVPPWKFALG---PYGHDPTIRQAIRTYSTRLSNFStfntTSDLGDGLPDDDDD-QTRY 526
                 45555554444...88889999999999999988888444444455554444443.3433 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.8e-08   0.00017      57     138 ..     195     281 ..     104     289 .. 0.82
   2 ?   -0.6   0.0      0.14   6.4e+02     225     270 ..     331     374 ..     291     376 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.8e-08
                 --EEEEEE----TT------TTTCCHHHHHHHHHHHHHH.....CTTBE-EEEE---TT---HHHHHTTS--TTB-EBEEBSB-SBC CS
  PF02129.13  57 GYavVvvdvrGtgaSeGeftvgsedevedgadvidWlak.....qpwsnGkVGmtGiSYdGttqlaaaatgvpalkaivpesaisdl 138
                 G      d+ G+g+S+G++++ ++ e++d +++i+ l++      + s+ k G +G S +++t+l+   ++ p   + v  sa s+l
  MMETSP0890-20130614|1802_1 195 GLSLCSFDCAGSGHSDGDYVSLGYYEADDCVAIIRSLRRrleksSQSSQFKYGLWGRSMGAVTALLYNIRKAPDASCLVVDSAFSSL 281
                 555566799*****************************999985588899*****************************99999887 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.14
                 HG--SEEEEEE--B-SSS-.HHHHHHHHHHCCTT-..EEEEE---BS CS
  PF02129.13 225 dkvkvpvllvsGwnDwnvk.rgviklyealkesgskekklvlgpwtH 270
                     vp+l+++G  D+     ++ +l+    +++   k l+  p++H
  MMETSP0890-20130614|1802_1 331 PSCLVPALFIHGREDDFIFpTHTDNLFASYGSKH---KSLLTPPGNH 374
                 556699*********7666788888888887776...4999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.41s 00:00:01.40 Elapsed: 00:00:00.83
# Mc/sec: 1735.19
//
Query:       MMETSP0890-20130614|1799_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-61  202.6   1.3    3.8e-15   55.7   0.0    4.2  4  PF00307.26 Calponin homology (CH) domain
    8.8e-13   46.4   0.5      2e-06   26.5   0.1    2.8  2  PF00036.27 EF hand
    4.6e-11   41.4   0.6    3.1e-06   26.1   0.1    2.7  2  PF13202.1  EF hand
    1.2e-10   40.6   0.8    8.2e-06   25.2   0.0    2.6  2  PF13833.1  EF-hand domain pair
    1.3e-09   37.4   0.0    0.00054   19.4   0.0    3.5  3  PF11971.3  CAMSAP CH domain
    1.9e-09   36.4   0.2    1.7e-05   24.1   0.1    2.8  2  PF13405.1  EF-hand domain
    2.5e-09   37.0   0.0    7.7e-09   35.4   0.0    1.8  1  PF13499.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0     2e-18   3.8e-15      17     107 ..     130     218 ..      95     220 .. 0.82
   2 !   46.7   0.0   1.2e-15   2.4e-12       1     106 [.     251     349 ..     251     352 .. 0.90
   3 !   47.6   0.0   6.5e-16   1.3e-12       3     107 ..     381     486 ..     379     488 .. 0.86
   4 !   48.9   0.0   2.5e-16   4.9e-13       1     105 [.     504     608 ..     504     611 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 2e-18
                 CTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTTS.-HHHHHTST-HHHHHHHHHHHHHH CS
  PF00307.26  17 qsrqvenlskdlsDGvaLaallhkycpdlvdlediskclke.svadsleNlqlalefaeeklgvscvl.tledllysgnkknvlaflaeLfrr 107
                 ++   + l++ ++DGv+L+ l++ + pd vd + +  +  + s ++++eN++la+++a++ +g+++++  ++d+l ++ ++++l++l++++r 
  MMETSP0890-20130614|1799_1 130 NIEGSTALFEACADGVILCRLINLVDPDAVDDRAV--NYTKlSKFKMIENANLAINAAKD-IGCRVTNiGAHDVL-DARPHLILGLLWQIIRL 218
                 445556899********************999999..666679*************9999.9*************.**************986 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 1.2e-15
                 HHHHHHHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS-HHHHHTST-HHHHHHHHHHHHH CS
  PF00307.26   1 edallrWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlvdlediskclkesvadsleNlqlalefaeeklgvscvltledllysgnkknvlaflaeLfr 106
                 e+ l+rW+n++l+++++sr+++ l k+lsD++++  ++h+++  + +l+ i++++k    +  ++++ +l+ ae  +g+  + ++ d+  sgn k++laf a+Lf+
  MMETSP0890-20130614|1799_1 251 ERILVRWVNYHLKNAGSSRRIKALGKELSDSIVYDTVMHQIYGSQ-QLNRINESEK----NLEKRATGVLNNAET-VGITPFIKARDIA-SGNAKLNLAFTAQLFN 349
                 6789***********99**************************98.8****55543....666789999995555.*************.***************8 PP

  == domain 3    score: 47.6 bits;  conditional E-value: 6.5e-16
                 HHHHHHHHHHTTS.T..CTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGS...TCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS.-HHHHHTST-HHHHHHHHHHHHHH CS
  PF00307.26   3 allrWinkvlekl.e..qsrqvenlskdlsDGvaLaallhkycpdlvdledi...skclkesvadsleNlqlalefaeeklgvscvl.tledllysgnkknvlaflaeLfrr 107
                 ++  W+n+++  + e  +  qv++l+++l++G+ ++++++++ p +v+++++   +k    +  + +eN + ++++ ++ l +  v+    d++ +gnkk++la++++L+rr
  MMETSP0890-20130614|1799_1 381 TFKLWLNSLNLIDrEsgDLIQVNDLFRELCNGLPILHIMEHIEPASVPWRKVvtmPK----NKHHLVENGNHVVDVGKK-LDLIMVNiGGTDIV-DGNKKLILAVMWQLMRR 486
                 7889***9998553422555777*****************************65422....4579**********9999.**************.***************97 PP

  == domain 4    score: 48.9 bits;  conditional E-value: 2.5e-16
                 HHHHHHHHHHHHTTSTCTSSHS...HH.HHHTCTSHHHHHHHHHHSTTSSSGGGS.TCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS-HHHHHTST-HHHHHHHHHHHH CS
  PF00307.26   1 edallrWinkvlekleqsrqve...nl.skdlsDGvaLaallhkycpdlvdledi.skclkesvadsleNlqlalefaeeklgvscvltledllysgnkknvlaflaeLf 105
                 e++++ W n +++ l+++ +v+    l +k+l+ ++ L++l  +++pd+v++e + + +   +  d+l N+++al++a++ lg  ++ t+ed++ ++ +k++l f+a+L 
  MMETSP0890-20130614|1799_1 504 ENEIVIWANAKVASLSDRTPVPpirTLgDKQLATSIYLIHLCAAISPDTVNWEIVtPGN---NDEDKLLNARYALSIARK-LGAGVFCTPEDIT-EVRPKMILLFIAALW 608
                 78999********9976777778988889**************************5223...568***********7777.*************.************996 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1     1e-09     2e-06       1      27 [.       3      29 ..       3      31 .. 0.91
   2 !   17.3   0.0   8.9e-07    0.0017       5      28 ..      43      66 ..      40      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1e-09
                HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealk 27
                e+ ++Fk+fD DgdG I+++E++++++
  MMETSP0890-20130614|1799_1  3 EVSKLFKKFDIDGDGAITVDELQQVVH 29
                6789*******************9986 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 8.9e-07
                HHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  5 aFkefDkDgdGkIsfeEfkealkk 28
                + + +D++ dGkI+ +Ef++++++
  MMETSP0890-20130614|1799_1 43 MVAQVDRNLDGKIEWDEFQTMMAN 66
                56789*****************85 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   1.6e-09   3.1e-06       3      25 .]       6      28 ..       4      28 .. 0.92
   2 !   12.7   0.0   2.8e-05     0.054       7      25 .]      46      64 ..      43      64 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.6e-09
                HHHHHH--S----B-HHHHHHHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreELkrlv 25
                ++F++fD +gDG I+ +EL+++v
  MMETSP0890-20130614|1799_1  6 KLFKKFDIDGDGAITVDELQQVV 28
                68******************986 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.8e-05
                HH--S----B-HHHHHHHH CS
   PF13202.1  7 afDlNgDGkIsreELkrlv 25
                ++D N DGkI  +E+++++
  MMETSP0890-20130614|1799_1 46 QVDRNLDGKIEWDEFQTMM 64
                89**************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.3e-07     0.001      25      49 ..       2      26 ..       2      31 .. 0.90
   2 !   25.2   0.0   4.2e-09   8.2e-06       5      52 ..      19      65 ..      19      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.3e-07
   PF13833.1 25 eevdilfrefDtdgdGkisfeEFcv 49
                +ev  lf++fD+dgdG+i+ +E  +
  MMETSP0890-20130614|1799_1  2 DEVSKLFKKFDIDGDGAITVDELQQ 26
                68999*****************876 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 4.2e-09
   PF13833.1  5 ItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52
                It +eL+  +  +gl   ++ ++  ++  +D++ dGki ++EF ++++
  MMETSP0890-20130614|1799_1 19 ITVDELQQVVHEIGLA-ATPADAALMVAQVDRNLDGKIEWDEFQTMMA 65
                899*****77444888.*****************************97 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.8e-07   0.00054      17      84 ..     138     203 ..     128     204 .. 0.88
   2 !   11.9   0.0   5.9e-05      0.12       9      44 ..     398     433 ..     392     457 .. 0.84
   3 ?    1.5   0.0      0.11   2.1e+02      34      85 .]     549     596 ..     539     596 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.8e-07
   PF11971.3  17 trdlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefceekLgnkvseleledllyv 84 
                  +  +DGv+L+ li+   P++v+ ++++  +++s +++++N +l+ +++++ +g +v +  + d+l++
  MMETSP0890-20130614|1799_1 138 FEACADGVILCRLINLVDPDAVDDRAVN-YTKLSKFKMIENANLAINAAKD-IGCRVTNIGAHDVLDA 203
                 57789***********************.999*************999776.7888888777777766 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.9e-05
   PF11971.3   9 lsppvenltrdlsDGvaLaalihfYcPklvpledic 44 
                 +  +v++l r+l++G+ ++ ++ +  P++vp++++ 
  MMETSP0890-20130614|1799_1 398 DLIQVNDLFRELCNGLPILHIMEHIEPASVPWRKVV 433
                 5668****************************9987 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.11
   PF11971.3  34 cPklvplediclketmsvadslyNlqllqefceekLgnkvseleledllyvr 85 
                  P+ v++e ++  + +  +d+l N + + +   +kLg  v+  ++ed++ vr
  MMETSP0890-20130614|1799_1 549 SPDTVNWEIVT--PGNNDEDKLLNARYALSI-ARKLGAGVFC-TPEDITEVR 596
                 69999998888..99999**********999.5669999998.999999875 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   8.9e-09   1.7e-05       4      27 ..       6      29 ..       3      33 .. 0.89
   2 !    9.3   0.0   0.00051      0.99       8      27 ..      46      65 ..      44      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 8.9e-09
                ---GCC-------B---HHHHHHH CS
   PF13405.1  4 eaFklfDkdgdGkidaeELrdaLr 27
                ++Fk+fD dgdG i+ +EL+++ +
  MMETSP0890-20130614|1799_1  6 KLFKKFDIDGDGAITVDELQQVVH 29
                89*******************976 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00051
                CC-------B---HHHHHHH CS
   PF13405.1  8 lfDkdgdGkidaeELrdaLr 27
                + D++ dGki+++E++ ++ 
  MMETSP0890-20130614|1799_1 46 QVDRNLDGKIEWDEFQTMMA 65
                579999**********9996 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0     4e-12   7.7e-09       4      66 .]       6      64 ..       3      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 4e-12
   PF13499.1  4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                ++Fk++D dgdg ++++eL+++   +g   ++ +   +    ++++D n dG++ ++Ef +++
  MMETSP0890-20130614|1799_1  6 KLFKKFDIDGDGAITVDELQQVVHEIGLAATPADAALM----VAQVDRNLDGKIEWDEFQTMM 64
                57*************************66666666666....******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.29u 0.40s 00:00:01.69 Elapsed: 00:00:00.83
# Mc/sec: 2277.98
//
Query:       MMETSP0890-20130614|1803_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-30  106.4   0.6    1.7e-30  106.0   0.4    1.1  1  PF00106.20 short chain dehydrogenase
    3.4e-13   49.8   0.0    4.4e-13   49.4   0.0    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    4.8e-13   49.0   0.4    7.4e-13   48.4   0.3    1.2  1  PF08659.5  KR domain
    4.9e-12   45.6   0.0    8.3e-12   44.9   0.0    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family
    6.1e-07   29.5   0.1      1e-06   28.7   0.1    1.4  1  PF13460.1  NADH(P)-binding
    6.3e-06   25.5   0.3    9.8e-06   24.8   0.2    1.2  1  PF05368.8  NmrA-like family
    0.00016   20.5   0.0    0.00021   20.1   0.0    1.2  1  PF02719.10 Polysaccharide biosynthesis protein
    0.00029   20.3   0.2    0.00045   19.7   0.2    1.2  1  PF04127.10 DNA / pantothenate metabolism flavoprotein
     0.0024   16.6   0.1     0.0038   16.0   0.1    1.3  1  PF04321.12 RmlD substrate binding domain
     0.0038   16.1   0.1      0.031   13.2   0.0    2.0  2  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
     0.0088   16.0   0.2      0.013   15.4   0.1    1.3  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
     0.0094   16.2   0.2      0.021   15.1   0.1    1.5  1  PF03447.11 Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.015   14.1   0.1       0.64    8.7   0.1    2.4  3  PF07993.7  Male sterility protein
      0.019   13.5   0.1      0.025   13.1   0.0    1.1  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
      0.027   13.8   0.0      0.045   13.1   0.0    1.2  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.041   14.1   0.4       0.15   12.3   0.1    2.0  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
      0.056   13.0   0.1       0.08   12.5   0.0    1.3  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.076   12.5   0.3       0.11   12.0   0.2    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
      0.083   12.7   0.3       0.13   12.1   0.2    1.3  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.4   2.3e-33   1.7e-30       1     166 [.       9     166 ..       9     167 .. 0.92

  Alignments for each domain:
  == domain 1    score: 106.0 bits;  conditional E-value: 2.3e-33
                 -EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltldadlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 +++++TG++g++G a+A+ L+++ga  + +++rr   ++ +     le++g   + +  D++d++++ +l+++++k+ g++d+++++ag++  d ++eel+++++ +vl+++v g++l+++ + ++d ++++++ S++++ + p+ aaY+a+k+a+++l ++++ +g
  MMETSP0890-20130614|1803_1   9 KVAIVTGASGTIGGAIANALADDGA-TVFMAARR--VEKMR----MLEREG--LHSIGTDITDENSVVTLFEHVKKKCGKIDLLINAAGIAApDVSIEELSAADFLQVLNVNVLGSFLCAREAFRHDCKRIINIGSISSMAPRPNSAAYTASKFAIQGLNRALALDG 166
                 799********************65.88899999..44444....445444..477889*******************************999*********************************************************************99887 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   6.1e-16   4.4e-13       6     185 ..      18     183 ..      15     198 .. 0.91

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 6.1e-16
                 -----HHHHHHHH---EEEE---HH----------------------TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE-------------------THHHHHHHHHH----S---EEEEEE----- CS
   PF13561.1   6 nsigwaiakalaeaGaevilttwvpaklkkkvqelakelpadvvplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplkt 185
                   ig aia ala+ Ga+v +  +  +k     +++ ++ + + +  D+t+e++v +l+e vk++  gkiD l+++++++++     ++ e+s+ ++l+ l+++++     ++ a       + + i+ +  + s  + p+   + ++K a+  l+R lA +  + ++i v +   G +++
  MMETSP0890-20130614|1803_1  18 GTIGGAIANALADDGATVFMAARRVEK-----MRMLEREGLHSIGTDITDENSVVTLFEHVKKKC-GKIDLLINAAGIAAP---DVSIEELSAADFLQVLNVNVLGSFLCAREAFR----HDCKRIINIGSISSMAPRPNSAAYTASKFAIQGLNRALALDGRQ-RNISVGVLHPGNVAS 183
                 679********************9998.....57777778899*********************8.**************9...55677****************99999999966....78899************************************665.*****9998888776 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.3     1e-15   7.4e-13       3     164 ..      11     163 ..      10     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 1e-15
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE------.---TTT--HHHHHHHHHHHHHHHHHHHHHHCC----EEEEEEEGGGT-------------HHHHHH----- CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlr.dallaemtaedlaavlapKvtGawnLhelladepldffvlfSSiagvlgsagqanyaaanaflDalaehrr 164
                  +vtG+ g +G ++a+ La++ga+   +++r+        ++++ le+ g   + +  D++d+++v +l+e+v+++ ++++  ++aAg+ + d  ++e++a+d+ +vl+  v G+    +    ++ + ++ + Si+++   +  a+y+a++  + +l ++ +
  MMETSP0890-20130614|1803_1  11 AIVTGASGTIGGAIANALADDGATVF-MAARR-------VEKMRMLEREG--LHSIGTDITDENSVVTLFEHVKKKCGKIDLLINAAGIAApDVSIEELSAADFLQVLNVNVLGSFLCAREAFRHDCKRIINIGSISSMAPRPNSAAYTASKFAIQGLNRALA 163
                 58********************9755.55555.......24677899987..57899********************************996779********************9988777778*************************9988877766665 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.2e-14   8.3e-12       2     173 ..      12     184 ..      11     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1.2e-14
                 EEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH.TBEEEB--TT-HHHHHHHHHHH.....T.SEEEE--S---HHHCC..CSHHHH...HHHHT---HHHHHHHHHHTT.EEEEEEE.GGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHH...HHHHT-EEEEEEESEEE-T CS
  PF01370.16   2 lVtGatGfiGsalveallekgyevvnlirrtrseslatvri.rvelveldltdkdalerlfaee.....qpdaVihlAaesgvdass..edpadf...ieanvegtlnlleaarkagvkrflfasS.sevygkdaeqpikEetplgplspYaaaKlageklveay...aeeyglnaiilrlfnvyGp 173
                 +VtGa+G iG a+++al++ g +  ++  ++r e+ +  ++  ++ +  d+td++++  lf+ +     ++d  i++A+ ++ d s+   ++adf   ++ nv g+    ++a+++++kr+++++S s + +++++              Y a+K a++ l +a+   +++ ++++ +l + nv ++
  MMETSP0890-20130614|1803_1  12 IVTGASGTIGGAIANALADDGAT--VFMAARRVEKMRMLEReGLHSIGTDITDENSVVTLFEHVkkkcgKIDLLINAAGIAAPDVSIeeLSAADFlqvLNVNVLGSFLCAREAFRHDCKRIINIGSiSSMAPRPNSAA------------YTASKFAIQGLNRALaldGRQRNISVGVLHPGNVASE 184
                 8**********************..66666666655554445889999*************9999999***********9997777643455555111678*************************999999995555............7777777777777775555566667777777776665 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   1.4e-09     1e-06       3     106 ..      13     143 ..      12     200 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.4e-09
   PF13460.1   3 viGAtGktGrrivkellarghevtalvRnpsklpe..ssgvtivkkDlfdledlaeala.......gvdvvvdafgarped................regvkhlldalk..aagvrrlvvvsaaglyrdkp 106
                 v+GA+G +G +i+  l++ g +v   +R+ +k++    +g++ +  D++d++++  +++        +d ++ a+g  ++d                +  +  +l a +  +++++r++ +++ ++   +p
  MMETSP0890-20130614|1803_1  13 VTGASGTIGGAIANALADDGATVFMAARRVEKMRMleREGLHSIGTDITDENSVVTLFEhvkkkcgKIDLLINAAGIAAPDvsieelsaadflqvlnVNVLGSFLCAREafRHDCKRIINIGSISSMAPRP 143
                 9********************************99999*************77666666333333268999999987777444444555556555553333333333331357788888777777655555 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.4e-08   9.8e-06       2      66 ..      12      74 ..      11      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.4e-08
                EESS----HHHHHHHHHHH---EEEEE-S-----HHHHHHHSTTEEE---TT-HHHHHHHH---- CS
   PF05368.8  2 lviGaTGrqGksvvraslkaghkvralvRdlkselakslkaaGvelvegdlddkeslvealkgvd 66
                +v+Ga+G +G+++++a++++g +v++  R +++  ++ l+ +G + +  d+ d++s+v++++ v+
  MMETSP0890-20130614|1803_1 12 IVTGASGTIGGAIANALADDGATVFMAARRVEK--MRMLEREGLHSIGTDITDENSVVTLFEHVK 74
                599**************************9865..67899*********************9986 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.9e-07   0.00021       2     172 ..      12     182 ..      11     201 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.9e-07
  PF02719.10   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaA..AlKhVPlvee...npleavktNvlgtenvieaaieagvekvvliStDKAvnP..t.nvmGatKrlaekllqalaeeseekktkfvvvRfGNVl 172
                 +vtGa+G+iG ++ + +++   +++++  r   k+  +e+e  +++ ++ +    +     v+  e++++ +   k+d++++aA  A   V + e      l++++ Nvlg+  +++ a +++ ++++ i +   + P     ++ a+K + + l  ala + ++++ ++ v   GNV 
  MMETSP0890-20130614|1803_1  12 IVTGASGTIGGAIANALADDG-ATVFMAARRVEKMRMLEREGLHSIGTD-I----TDENSVVTLFEHVKKKCG--KIDLLINAAgiAAPDVSIEELsaaDFLQVLNVNVLGSFLCAREAFRHDCKRIINIGSISSMAPrpNsAAYTASKFAIQGLNRALALDGRQRNISVGVLHPGNVA 182
                 69**********998877665.566777777677788888854333332.2....222233444455555555..899*****966667898888722245678899*********************998755544422424789999999999999888888888888888888885 PP

>> PF04127.10  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   6.3e-07   0.00045      26      93 ..      15      90 ..      11     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.3e-07
  PF04127.10 26 rSSGkmGvalAeaaaerGaeVtlvsgpv.elet.......pagvkvvkvesaeemleaveealkkadilimaAAva 93
                 +SG+ G a+A+a+a+ Ga+V + +  v +++          g+++++ +s+  + e+v++++ k d+li aA +a
  MMETSP0890-20130614|1803_1 15 GASGTIGGAIANALADDGATVFMAARRVeKMRMlereglhSIGTDITDENSVVTLFEHVKKKCGKIDLLINAAGIA 90
                68*********************999973544333344322367899999***********************887 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.3e-06    0.0038       4      79 ..      12     107 ..       9     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.3e-06
                 EEE--------HHHHHH----EEEEE--TT...............T--TT-HHHHHHHHHHH--S.....EEEE------HHHHHH-HHHHHHHHT CS
  PF04321.12   4 lvtGanGqlGteLaralkeegvevvaldre...............eldltdpeavaalvkeakpd.....vvvnaAAytavdkaEseeeeayavna 79 
                 +vtGa+G +G ++a+al+++g++v    r+                +d+td+++v +l++++k +     +++naA   a d   +e  +a  +++
  MMETSP0890-20130614|1803_1  12 IVTGASGTIGGAIANALADDGATVFMAARRvekmrmlereglhsiGTDITDENSVVTLFEHVKKKcgkidLLINAAGIAAPDVSIEELSAADFLQV 107
                 79*******************99999988899*************9*************887654333339*****99999977666444433333 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.2e-05     0.031      35      75 ..       7      47 ..       2      52 .. 0.89
   2 ?    0.6   0.0      0.33   2.4e+02      65      90 ..      69      90 ..      54      98 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.2e-05
                -S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-ST--- CS
  PF02882.14 35 egkkvvvvGrsnivgkplallLleknatVtvchsktkdlae 75
                +gk ++v G+s ++g ++a  L+ ++atV ++ ++ ++++ 
  MMETSP0890-20130614|1803_1  7 NGKVAIVTGASGTIGGAIANALADDGATVFMAARRVEKMRM 47
                799****************************9999887765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.33
                EE-TT-ST---HHHHSSEEEE----- CS
  PF02882.14 65 vchsktkdlaeilreaDivvvavGkp 90
                ++    +++++++ + D+++ a+G +
  MMETSP0890-20130614|1803_1 69 LF----EHVKKKCGKIDLLINAAGIA 90
                44....4688999999******9976 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.9e-05     0.013      10      99 ..       6     103 ..       1     113 [. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.9e-05
                 ..--EEEEE--.--HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH...........T-EE---S-HHHHHHT-SEEEE-S--SS-SB-GGG----- CS
  PF01488.15  10 lkgkkvlviGA.GemarlvakhLlekgvkkiviaNRtaekakeLaeel........ggeevealpleeleellaeadvvisatsapepiiekeaveeak 99 
                 ++gk ++v GA G ++ ++a++L+  g++ ++ a R  ek++ L +e         ++e+  ++ +e +++  ++ d++i+a ++  p ++ e++ +a+
  MMETSP0890-20130614|1803_1   6 FNGKVAIVTGAsGTIGGAIANALADDGAT-VFMAARRVEKMRMLEREGlhsigtdiTDENSVVTLFEHVKKKCGKIDLLINAAGIAAPDVSIEELSAAD 103
                 56888999999677888999999999*99.**************988778889999999999**********************999988888877765 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.9e-05     0.021       3      72 ..      18      92 ..      17     113 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.9e-05
                -----HHHHHHHH---S.....SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHH..S-EEEEE-S--TTT CS
  PF03447.11  3 GaiGsallellkrqqee.....iplelvavadrdsllskarkallgdeavtldlddlvadl..rvdvvVEcasseav 72
                G+iG+a++++l+++ ++     + +e + +++r+    +    + +de  +  l++ v++   ++d+++ +a+++a 
  MMETSP0890-20130614|1803_1 18 GTIGGAIANALADDGATvfmaaRRVEKMRMLERE--GLHSIGTDITDENSVVTLFEHVKKKcgKIDLLINAAGIAAP 92
                9***************966666666666666666..4455777888888888888888877999********99885 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00088      0.64       1      41 [.      13      51 ..      13      95 .. 0.82
   2 ?   -0.0   0.0      0.42     3e+02      81     125 ..      73     125 ..      47     170 .. 0.58
   3 ?    2.6   0.0     0.066        48     166     222 ..     146     215 ..     135     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00088
   PF07993.7  1 lTGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRl 41
                +TGa+G +G ++ + l ++ +  ++++ +R  ++  +leR 
  MMETSP0890-20130614|1803_1 13 VTGASGTIGGAIANALADDGA--TVFMAARRVEKMRMLERE 51
                8*****************998..9******99998888885 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.42
   PF07993.7  81 lqelaeevdviihsAAtvnfeepyke........llrtNvlGtrevlelakkl 125
                 +++ + ++d+ i+ A+    + +++e        +l++NvlG   + + a ++
  MMETSP0890-20130614|1803_1  73 VKKKCGKIDLLINAAGIAAPDVSIEElsaadflqVLNVNVLGSFLCAREAFRH 125
                 45556677777777665444443333111111114455555555444444444 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.066
   PF07993.7 166 ntYtqsKalaEklvreas...rrsglpvviiRpsiivg...........esetGwiegsdlgldgllggva 222
                  +Yt sK++   l r+ +   r++++ v ++ p+++ +           + ++G ++ +d +++ +l ++ 
  MMETSP0890-20130614|1803_1 146 AAYTASKFAIQGLNRALAldgRQRNISVGVLHPGNVASellspeifkqrQDQEGLLDLND-LVRSVLLMAS 215
                 489999999988877764333677999**********99999988888877888888888.7776666655 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05     0.025       1     122 [.      12     141 ..      12     150 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.5e-05
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdk.......ekleealegvdvvihtaaii..dvlg....kaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgp 122
                 +VtG+sG +G ++ ++L + +  ++v ++ +r ++    e + l+    +  D+td+       e++++ +  +d++i  a+i   dv      +a + ++l+vnv G       +++++ ++++   s++ + p
  MMETSP0890-20130614|1803_1  12 IVTGASGTIGGAIANALADDG--ATVFMAARRVEKMRMLEREGLH---SIGTDITDEnsvvtlfEHVKKKCGKIDLLINAAGIAapDVSIeelsAADFLQVLNVNVLGSFLCAREAFRHDCKRIINIGSISSMAP 141
                 69*****************99..5666666665555433333333...445666665111111167788999999****99986223332444477788899999999999999999999999998888877665 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.2e-05     0.045       6      72 ..      17      84 ..      12      87 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.2e-05
                ----------HHHHHHH-EEEE----.HHHHHH----EEE-SS-EEE---SEEES-T...TT----SEEE CS
  PF02558.11  6 aGaiGsllaakLakagadvtlilrsr.rlealkknglrlksdkgeeivrppealsee..kqelepidlli 72
                +G iG+ +a  La  ga v + +r+  ++  l+++gl+  + +   +  + +++ +e  k++ ++idlli
  MMETSP0890-20130614|1803_1 17 SGTIGGAIANALADDGATVFMAARRVeKMRMLEREGLHSIGTD--ITDENSVVTLFEhvKKKCGKIDLLI 84
                599***********************88888*****8766666..3333333333334478899999998 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00021      0.15       1      47 [.       9      53 ..       9      75 .. 0.80
   2 ?   -1.1   0.0       3.1   2.3e+03      12      29 ..     156     172 ..     132     190 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00021
  PF03807.12  1 kigii..GaGnigealakglaaagaqkheviiaasrspekaeelaeelg 47
                k++i+   +G ig a+a+ la  g     v +a  r  ek++ l++e  
  MMETSP0890-20130614|1803_1  9 KVAIVtgASGTIGGAIANALADDG---ATVFMA-ARRVEKMRMLEREGL 53
                688888457***************...999967.999999999887755 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 3.1
  PF03807.12  12 ealakglaaagaqkhevi 29 
                 ++l + la  g +++++ 
  MMETSP0890-20130614|1803_1 156 QGLNRALALDG-RQRNIS 172
                 45555555555.444444 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.08       7      41 ..      17      51 ..       9     102 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
                ------HHHHHHHTTEEEEEEE-S-HHHHHHHHHH CS
  PF01210.18  7 aGswGtalAkvlaenghevrlWvreeklieeiner 41
                +G +G a+A+ la+ g +v + +r+ ++++ ++++
  MMETSP0890-20130614|1803_1 17 SGTIGGAIANALADDGATVFMAARRVEKMRMLERE 51
                6************************9999888765 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00016      0.11       4      37 ..      13      47 ..       9      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00016
                EE--.-------HHHHHCT.SEEEEE-S-HHHHHH CS
  PF02737.13  4 VvGa.GtmGagiAavfaragleVvlvdiseealek 37
                V Ga Gt+G  iA+++a+ g +V +  ++ e+++ 
  MMETSP0890-20130614|1803_1 13 VTGAsGTIGGAIANALADDGATVFMAARRVEKMRM 47
                55878********************9997666543 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00018      0.13       4      61 ..      12      64 ..       9     103 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00018
                --B--------HHHHHHHH.---EE-EE-----......................... CS
  PF01113.15  4 avvGasGrmGkevikaieeaedlelvaavdrkeselegkdagellglgklgvavtddl 61
                +v+GasG++G ++++a+ ++ ++++  a  r e    ++ + e  gl+++g  +td+ 
  MMETSP0890-20130614|1803_1 12 IVTGASGTIGGAIANALADD-GATVFMAARRVE----KMRMLEREGLHSIGTDITDEN 64
                699**************995.555555444444....233334444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 695.53
//
Query:       MMETSP0890-20130614|1809_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-25   88.8   0.0    2.1e-25   88.7   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    1.8e-12   46.7   0.0    1.7e-06   27.5   0.0    2.0  2  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
       0.11   12.5   1.3        1.2    9.2   0.1    2.6  3  PF05593.9 RHS Repeat
       0.36   10.7   4.9         45    4.0   0.0    3.2  2  PF05345.7 Putative Ig domain
        8.3    6.6   8.2         16    5.7   0.5    3.2  4  PF12613.3 Flagellin structural protein


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   7.7e-29   2.1e-25      15      93 ..       2      80 ..       1      82 [] 0.95

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 7.7e-29
   PF13306.1 15 tsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslt 93
                t++t+p  +t+Ige+aF  c+sl++itlp  lteigeyaF +c+slt++t+p  lt+ige aF++c+sl+++++p s+t
  MMETSP0890-20130614|1809_1  2 TQLTLPAGLTTIGERAFGVCTSLTQITLPAGLTEIGEYAFGSCTSLTQLTLPAGLTTIGEGAFYRCNSLTQLTLPDSIT 80
                7899***********************************************************************9987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-08   5.2e-05       6      56 ..       4      52 ..       2      54 .. 0.93
   2 !   27.5   0.0   6.3e-10   1.7e-06      13      56 ..      33      75 ..      27      79 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.9e-08
   PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                L L    l++i+++aF+ +++L+ + L    l++i + af +++sL++L L
  MMETSP0890-20130614|1809_1  4 LTLPAG-LTTIGERAFGVCTSLTQITLP-AGLTEIGEYAFGSCTSLTQLTL 52
                666777.9********************.********************98 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 6.3e-10
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i++ aF+++++L+ L L    l++i ++af  ++sL++L L
  MMETSP0890-20130614|1809_1 33 LTEIGEYAFGSCTSLTQLTLP-AGLTTIGEGAFYRCNSLTQLTL 75
                99*******************.********************99 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.03        83      11      38 .]       5      34 ..       2      34 .. 0.61
   2 ?    9.2   0.1   0.00044       1.2       7      38 .]      24      57 ..      23      58 .. 0.93
   3 ?    4.7   0.2     0.012        33       7      30 ..      47      78 ..      47      81 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.03
   PF05593.9 11 tdatGrvt..tYtYDaaGrlTaltdpdGtt 38
                t + G +t    +      lT++t p+G t
  MMETSP0890-20130614|1809_1  5 TLPAGLTTigERAFGVCTSLTQITLPAGLT 34
                556666666435555666688888888865 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00044
   PF05593.9  7 LtevtdatGrvt..tYtYDaaGrlTaltdpdGtt 38
                Lt++t + G +    Y+  +   lT+lt p+G t
  MMETSP0890-20130614|1809_1 24 LTQITLPAGLTEigEYAFGSCTSLTQLTLPAGLT 57
                89*********9977****************986 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.012
   PF05593.9  7 LtevtdatGrvt....t.YtYDaaGrlT...a 30
                Lt+ t + G +t      Y+ +++ +lT   +
  MMETSP0890-20130614|1809_1 47 LTQLTLPAGLTTigegAfYRCNSLTQLTlpdS 78
                78888899999988885588888777664444 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.5      0.02        54       7      17 ..      24      34 ..       2      34 .. 0.71
   2 ?    4.0   0.0     0.016        45       9      17 ..      49      57 ..      38      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.02
   PF05345.7  7 pgsngLPsGLt 17
                 ++ +LP+GLt
  MMETSP0890-20130614|1809_1 24 LTQITLPAGLT 34
                36778888887 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.016
   PF05345.7  9 sngLPsGLt 17
                + +LP+GLt
  MMETSP0890-20130614|1809_1 49 QLTLPAGLT 57
                559*****8 PP

>> PF12613.3  Flagellin structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.39   1.1e+03      11      20 ..       2      11 ..       1      17 [. 0.83
   2 ?    4.1   0.1     0.018        49       5      20 ..      19      34 ..      15      40 .. 0.84
   3 ?    5.7   0.5    0.0058        16       5      20 ..      42      57 ..      38      71 .. 0.86
   4 ?   -1.0   0.0      0.69   1.9e+03      10      20 ..      70      80 ..      58      81 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.39
   PF12613.3 11 taltlsagAt 20
                t+ltl ag t
  MMETSP0890-20130614|1809_1  2 TQLTLPAGLT 11
                7999999988 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.018
   PF12613.3  5 gtGtAvtaltlsagAt 20
                g  t +t++tl ag t
  MMETSP0890-20130614|1809_1 19 GVCTSLTQITLPAGLT 34
                56699********998 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0058
   PF12613.3  5 gtGtAvtaltlsagAt 20
                g+ t +t+ltl ag t
  MMETSP0890-20130614|1809_1 42 GSCTSLTQLTLPAGLT 57
                889***********99 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.69
   PF12613.3 10 vtaltlsagAt 20
                +t+ltl  + t
  MMETSP0890-20130614|1809_1 70 LTQLTLPDSIT 80
                68899887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 272.92
//
Query:       MMETSP0890-20130614|1806_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-14   52.1   0.2    4.6e-13   49.1   0.0    2.7  2  PF13524.1 Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.092   12.7   0.0    2.3  2  PF14129.1 Domain of unknown function (DUF4296)
      0.017   14.1   0.2      0.033   13.1   0.1    1.4  1  PF03452.9 Anp1


Domain annotation for each model (and alignments):
>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.6   7.5e+03      49      77 ..      50      79 ..      43      87 .. 0.70
   2 !   49.1   0.0     1e-16   4.6e-13      13      91 ..     354     435 ..     316     436 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.6
   PF13524.1 49 leelaeklrylla.npeereaiaeaarerv 77
                ++el++ +++  + +p+  ++i ++a e +
  MMETSP0890-20130614|1806_1 50 IDELEKLIAKSKSqSPKVVQRIEKEAIEPI 79
                677777777666548888888888887755 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 1e-16
   PF13524.1  13 lrlfEaaacGtpvvtddt.sgleelfepgkeivlfe..dleelaeklryllanpeereaiaeaarervlaehtyehraeqll 91 
                 +r+fEa a+G++v+ d+    ++  f +gk++++++  d + ++  l+y+l++p+e++aia+a+ +++l+ h+  +r++ +l
  MMETSP0890-20130614|1806_1 354 FRFFEAVASGALVFVDEMyIPHPHPFIHGKHLIVYDnsDQQTFQNSLKYYLEHPQEARAIARAGLRHALRYHRALSRMDWIL 435
                 6***************99977888899***********************************************99998776 PP

>> PF14129.1  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.092      49      72 ..     392     415 ..     376     420 .. 0.91
   2 ?   -2.7   0.0       1.4   6.2e+03      60      82 ..     424     446 ..     423     450 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2e-05
   PF14129.1  49 dsaqfdsslvYYarhpeelkkIye 72 
                 d+++f++sl+YY +hp+e ++I +
  MMETSP0890-20130614|1806_1 392 DQQTFQNSLKYYLEHPQEARAIAR 415
                 899****************99975 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
   PF14129.1  60 YarhpeelkkIyekvskrLekek 82 
                 Y r + +++ I++++s+ L++ +
  MMETSP0890-20130614|1806_1 424 YHRALSRMDWILRSASDILQRSQ 446
                 78888999999999999998765 PP

>> PF03452.9  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.3e-06     0.033      34     131 ..     435     533 ..     428     536 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.3e-06
   PF03452.9  34 lrdaekfleeyfdnllkLtyphelidLaflvsdskegdktlealeealkklqkeesekkkFr.sitilekdfgqeigqsesdrhavkvqkerRklmara 131
                 lr+a++ l+    + +++ y+h   ++a+ v+++++ d +l+  + alk+++++++  ++F    ++  +d ++ ++q+++ r+++   + rR+l++ +
  MMETSP0890-20130614|1806_1 435 LRSASDILQRSQLHHKHIVYTHTARQIAYDVNSTTQVDPILDIASPALKRVDAKRNLGRRFPiTLHLEDADYKRLVKQNHERRKKLPPFRRRRRLLSLS 533
                 78888999999999999********************************************624556667777788******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.75
# Mc/sec: 1731.77
//
Query:       MMETSP0890-20130614|1808_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.9e-135  451.2   1.0   6.1e-135  450.9   0.7    1.1  1  PF00888.17 Cullin family
    4.1e-27   93.6   0.1    2.1e-26   91.4   0.1    2.2  2  PF10557.4  Cullin protein neddylation domain


Domain annotation for each model (and alignments):
>> PF00888.17  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.9   0.7  8.9e-139  6.1e-135     121     590 .]       1     506 [.       1     506 [. 0.98

  Alignments for each domain:
  == domain 1    score: 450.9 bits;  conditional E-value: 8.9e-139
  PF00888.17 121 liekeRkgeaidreliknvveslvelgadklevYeeeFekpfleatsefYkkea...lqessvseYlkkveerleeeeervkkylhestekklievvekvLieehletl....esefqklldnekiedLrrmYrllsrvpegleelkkaleehvkkeglelvekla........eetdpkdyveellelhdklqslvseafkndaaflealdkafesfvnkn..asksaellAkYiDqllkksskkleeeeleekldeiitlfkyledkdvFekfYrklLakRLlneksasddaekkmiekLkeecgeeftsklevMlkDislskelnrkfkeelekqldkllkkidlsvkvLstgfWptlskeksfelPeelekalerfeefYekkksgRkLtWlhslgkvelklefedkt..........yeltvstvqaaiLllFnd............keeltveelseatklsedlltraLqsllsakvllelkseedeelednskfslnsnfs 590
                 +i+ eR+g +idr+l+kn+ve++ ++g+ +l  Y  +Fe+ +l+at+e+Yk+ +   +++++ + Yl+k+e++le+e++rv +yl++s+e kl++v+e++L+e++ ++l     s+++ ll n++ +dL+rm+rl+srvp+gl ++++ ++ h++  g++++++ +          +++   v+ell+lhdk+  +v + f  ++ f++al++af +fvn++  +++ ael++ ++D +lk++ +kl++ee+e  l++ + lf+yl+dkd+F + Yr+ LakRLln++sasddaek mi+kLk +cg++ft k+e+Ml+D+ +  + +++f ++l k  +++   +++sv+vL+tg+Wp +   +   lP ++ ++ + f+e+Y kk+s+R+L W++slg++++k++f ++           y+l+vst qa++Ll+Fn             +  ++++++ +a+++++++l+r L+sl++ak +   k + +++++ +++f++n  fs
  MMETSP0890-20130614|1808_1   1 MIDTERDGAMIDRDLVKNCVELIEAMGMGSLDSYCADFEEELLNATKEYYKRISqawIESDDTPTYLEKAEKALEAEKQRVANYLNSSSEPKLLRVCESELLEKRETSLlekdGSGCRALLANDRANDLARMFRLFSRVPNGLPPMAALVKAHIEAMGTDIISRREqrlengekDTNQDPALVKELLALHDKYLAVVAQQFSGNSLFQKALKEAFVEFVNHDvgKFSNAELMSSFCDRILKSGGEKLSDEEIEAYLEKTVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAEKLMIGKLKLRCGSQFTGKMEGMLNDLAIGVDHQQDFDQHLPKLGQDK--IPEFSVQVLTTGYWPSFHAIE-PRLPNDMIHCTNIFKEYYDKKNSKRRLAWMYSLGNATIKASFFPQPkkdnkpttknYDLQVSTLQAVVLLAFNVagdssedhrrqnNTDWSYDSVRQAVNIPDEHLKRVLHSLACAKHKILSKTPPGNAIKSTDTFRVNAAFS 506
                 799************************************************************************************************************9999*************************************************99*****9986666679**********************************************************************************************************************************************************9977765..9********************.99******************************************999************************************************************************999*****************9885 PP

>> PF10557.4  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.89   6.1e+03      38      53 ..     141     156 ..     135     157 .. 0.77
   2 !   91.4   0.1     3e-30   2.1e-26       1      65 [.     528     591 ..     528     594 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.89
   PF10557.4  38 krfkpsvadiKkrIes 53 
                 +  +p +a +K  Ie 
  MMETSP0890-20130614|1808_1 141 NGLPPMAALVKAHIEA 156
                 5678999999999996 PP

  == domain 2    score: 91.4 bits;  conditional E-value: 3e-30
   PF10557.4   1 veedrkleieaaIVriMKsrktlshneLvaevieqlkkrfkpsvadiKkrIesLIekeYleRdee 65 
                 veedr+++ieaa+VriMK+rktl+h++L+aev +ql+  f p+++ iK+rIe LI++eYleRd++
  MMETSP0890-20130614|1808_1 528 VEEDRTVAIEAAVVRIMKARKTLDHQQLLAEVLSQLS-FFRPNPKVIKRRIEALIDREYLERDPD 591
                 79**********************************7.*************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.73
# Mc/sec: 1969.61
//
Query:       MMETSP0890-20130614|1811_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-27   93.2   0.3    4.3e-27   93.0   0.2    1.0  1  PF00240.18 Ubiquitin family
    9.1e-17   60.4   0.2    9.9e-17   60.2   0.2    1.0  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
    0.00076   19.1   0.0    0.00078   19.0   0.0    1.1  1  PF13019.1  Telomere stability and silencing
     0.0017   18.0   0.1     0.0041   16.7   0.0    1.6  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
     0.0023   17.6   0.0     0.0026   17.5   0.0    1.1  1  PF11470.3  GLUT4 regulating protein TUG
     0.0028   17.6   0.0     0.0031   17.5   0.0    1.1  1  PF10302.4  DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.2   1.9e-30   4.3e-27       1      55 [.       9      63 .]       9      63 .] 0.99

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 1.9e-30
                EESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTT CS
  PF00240.18  1 ktlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyn 55
                ktl+gktitl+veps t++++K+ki++kegip+dqqrLi++Gk+LeD+rtls+yn
  MMETSP0890-20130614|1811_1  9 KTLTGKTITLDVEPSATIDDVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
                89****************************************************8 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.2   4.3e-20   9.9e-17       1      61 [.       4      63 .]       4      63 .] 0.98

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 4.3e-20
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS CS
   PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedld 61
                ++i++k+ +gk+++++V+p+ t+ +++++ ++k+gip+ +q+rLiF G++L++ +t+ d++
  MMETSP0890-20130614|1811_1  4 MQIFVKTLTGKTITLDVEPSATIDDVKQKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYN 63
                89************************************.********************95 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.4e-07   0.00078       1      48 [.       4      47 ..       4      62 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.4e-07
   PF13019.1  1 invlvssldglslpktlsltlpstatvsdlvdklserlpaslteslvL 48
                ++++v++l+g    kt++l ++++at++d+ +k++++ ++++++++++
  MMETSP0890-20130614|1811_1  4 MQIFVKTLTG----KTITLDVEPSATIDDVKQKIQDKEGIPPDQQRLI 47
                69********....9*************************99987433 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.8e-06    0.0041      10      69 ..      11      62 ..       3      63 .] 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.8e-06
                ----EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGG CS
   PF13881.1 10 vdGkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkel 69
                  Gk +  + +++++t++++k+k+     ++ke  p   ++ +li aGk Led +tL+++
  MMETSP0890-20130614|1811_1 11 LTGK-TITLDVEPSATIDDVKQKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDY 62
                5677.667788999*********9.....56777554..4559**************987 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0026       5      47 ..      12      54 ..       8      60 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.1e-06
   PF11470.3  5 nfrrvkvkvtpsttltqVleeackkfkldsneytLkhnnkpld 47
                ++++ ++ v+ps+t+ +V ++   k ++ +++ +L + +k+l+
  MMETSP0890-20130614|1811_1 12 TGKTITLDVEPSATIDDVKQKIQDKEGIPPDQQRLIFAGKQLE 54
                68999***********************************996 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0031      14      62 ..      16      60 ..       3      63 .] 0.79

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.3e-06
   PF10302.4 14 lrldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesala 62
                ++ld++   s t+ + k+ i+++ +   +  + rlI+aGk L+d  +l+
  MMETSP0890-20130614|1811_1 16 ITLDVE--PSATIDDVKQKIQDKEGIPPD--QQRLIFAGKQLEDGRTLS 60
                667777..99*************955554..4578*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.45s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 222.02
//
Query:       MMETSP0890-20130614|1810_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-34  117.2   0.0    7.1e-34  116.4   0.0    1.4  1  PF12437.3  Glutamine synthetase type III N terminal
    1.6e-31  109.3   0.0    2.8e-31  108.4   0.0    1.3  1  PF00120.19 Glutamine synthetase, catalytic domain


Domain annotation for each model (and alignments):
>> PF12437.3  Glutamine synthetase type III N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0     1e-37   7.1e-34      17     165 .]       1     160 [.       1     160 [. 0.92

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 1e-37
   PF12437.3  17 mkerlpkevykklkktiekgekldkevadvvakamkewalekgathythwfqPl........tgltaekhdsflepkedg......kvieefsgkeLikgepdassfpsgglratfeArGYtawdvtspafikeeegktlciPtvfvsytGeaLDkktpllrs 165
                 m+++lp +v++++k++i +ge+ +++   ++a+a+ +wa   gat+++hwf P          ++++ k+d+f++ + +         +e+f  ++L  ge+d+ssfpsgglr t++A  +t+wd  sp fi +    +l iPt fv++ G+ +D+ktpllrs
  MMETSP0890-20130614|1810_1   1 MEKTLPPAVHERFKNCIITGEECSEKDKTIIAEAIFKWARGLGATSFAHWFFPSrfgggavgGQASGLKYDAFIDLDWNAddslvrPFVESFPPDRLFGGESDGSSFPSGGLRVTHAAAAFTTWDRASPCFIYK---GVLRIPTSFVTHMGKCIDEKTPLLRS 160
                 899**************************************************987777643367788******98765444566447899******************************************8...79***********************8 PP

>> PF00120.19  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   4.1e-35   2.8e-31      10     214 ..     173     388 ..     166     401 .. 0.82

  Alignments for each domain:
  == domain 1    score: 108.4 bits;  conditional E-value: 4.1e-35
                 HHHHHHHH-.---EEE--B-EEEEESEEEEE------EEEEE.........---------B-TTTS--HHHHHHHHHHHHH----EEE-EEEE----EEEEE--EEHHHHHHHHHHHHHHHHHHHHH---EEE--S-S---------BEEEEEE..----BSS-----.----HHHHHH----TTTHHHHHHHHS-...STGGGGTS--..---SSSEEE CS
  PF00120.19  10 ralerlaee.glepvfgpElEFflfdkerpegspektglpsd.........kgqvkggyfsvapldeaedirreivkalealgievetihhEvapgQfEidlkfadaleaaDnlvlfkyvvkevAekhGltatfmpKPlfgdnGsGmHvhlSlwdakdgknlfadedgeadlsetarqflgGllkhakaitaltap...tvnsykRlvp..gteapvava 214
                 +a+  +ae+  +++++g E+EFf++ +e ++++p    ++ +         k q+ +  +++++  ++e+++ ++ +a++++g +++  h+EvapgQ+E++  f  a++ +D  v+f+++    A+k +l+++f++KP++g nGsG+H ++S+++a +g n f+ +++  + ++ +   ++ l   + +++ l+      +++++Rl +  +++a+++++
  MMETSP0890-20130614|1810_1 173 KAMGIFAETkAVKSFLGWEQEFFVVSAEAYKKRP--DLMNCGrtllgklppKHQQADLNYFAPIPAKVEELLVRVQAAMLQIGSPMSVRHNEVAPGQHEMSPIFCVANASCDSNVFFMELCTYEAAKLDLVVLFHEKPFKGINGSGKHGNWSIQTA-EGLNFFHPGKND-QAQTLFVASIACLAYGLSQFNELVRVavaAAGNDHRLGAqeAPPAIISLY 388
                 55555665405569*************8888888..44444445777787789999999999999**************************************88*************************************************98.699****99666.6666666666655444444444444355599*******966667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:01.01
# Mc/sec: 1603.90
//
Query:       MMETSP0890-20130614|1813_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-09   35.2   0.0    8.7e-09   34.9   0.0    1.1  1  PF12973.2 ChrR Cupin-like domain


Domain annotation for each model (and alignments):
>> PF12973.2  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   6.4e-13   8.7e-09       7      90 ..      10      90 ..       7      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 6.4e-13
                ----EEEEEEEE-----EEEEEEE---------EE-----EEEEEE--B------B----EEE--TT-EE---.-----EEEEEE CS
   PF12973.2  7 aegverkpLeregeekaratslvryapgsrfpahkhpggeeilVLeGvfsdeegdypaGsylrnppgsshapf.seegctilvkl 90
                +eg++  pL ++++e    +++  ++pg++++  + ++g+e++V++G f + +    + s+lr ppg++ +    ++g+ +++k 
  MMETSP0890-20130614|1813_1 10 EEGISIIPLFKDKNE---NVRMELWEPGTTIQL-NLSKGAEFFVIDGSFIESHDTLTKWSWLRLPPGATLNAKaGDTGAKVWIKS 90
                6899999***99988...9***********985.678999***************************998766369999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|1812_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-63  209.7   0.0    1.3e-31  108.8   0.0    2.0  2  PF13306.1  Leucine rich repeats (6 copies)
    6.8e-22   76.8   0.1      1e-07   31.4   0.0    4.2  4  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
        0.7    9.3   3.0          7    6.1   0.3    3.0  4  PF06364.7  Protein of unknown function (DUF1068)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   2.9e-35   1.3e-31      11     111 ..       2     103 ..       1     103 [. 0.98
   2 !  105.6   0.0   2.8e-34   1.3e-30       1     101 [.      84     184 ..      84     185 .] 0.84

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 2.9e-35
   PF13306.1  11 cknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitip 111
                 c++lt+it+p  +t+Ige aF nc+sl+++tlp  lt+ig +aF+ c+slt+it+   lt+ig  aF +cssl++i++p  lttig++aF +c sl+++++p
  MMETSP0890-20130614|1812_1   2 CTSLTQITLPAGLTEIGEAAFVNCTSLTHLTLPAGLTTIGLRAFERCTSLTQITLLAGLTTIGCFAFCGCSSLTQITLPAGLTTIGDDAFRGCtSLTQLKLP 103
                 89*******************************************************************************************9***99886 PP

  == domain 2    score: 105.6 bits;  conditional E-value: 2.8e-34
   PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFs 101
                 t+Ig+ aF++c++lt++++p+ +++Ig +aF++c sl+++tlp  l +igeyaFs c+slt++++p  lt+ig +aF +c+sl++++ p  lttig saF 
  MMETSP0890-20130614|1812_1  84 TTIGDDAFRGCTSLTQLKLPTGLITIGRSAFHGCASLNRLTLPAGLITIGEYAFSWCTSLTQLSLPAGLTTIGVHAFVGCTSLNQVTSPAGLTTIGHSAFV 184
                 67889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999998886 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.9e-09   8.7e-06       2      56 ..       4      56 ..       3      58 .. 0.95
   2 !   16.9   0.0   7.9e-07    0.0036      13      56 ..      37      79 ..      34      81 .. 0.95
   3 !   31.4   0.0   2.2e-11     1e-07       2      56 ..      73     125 ..      72     127 .. 0.95
   4 !   15.7   0.0   1.8e-06    0.0082       3      53 ..     120     168 ..     120     170 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.9e-09
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                +L+ + L    l++i++ aF ++++L++L L    l++i  +af+ ++sL+++ L
  MMETSP0890-20130614|1812_1  4 SLTQITLPAG-LTEIGEAAFVNCTSLTHLTLP-AGLTTIGLRAFERCTSLTQITL 56
                7889999999.*********************.******************9987 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 7.9e-07
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+ +aF+++++L+ + L    l++i   af g+ sL+++ L
  MMETSP0890-20130614|1812_1 37 LTTIGLRAFERCTSLTQITLL-AGLTTIGCFAFCGCSSLTQITL 79
                89999****************.*******99**********988 PP

  == domain 3    score: 31.4 bits;  conditional E-value: 2.2e-11
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 +L+ + L    l++i+d+aF g+++L+ L+L  + l++i + af+g+ sL  L L
  MMETSP0890-20130614|1812_1  73 SLTQITLPAG-LTTIGDDAFRGCTSLTQLKLP-TGLITIGRSAFHGCASLNRLTL 125
                 7899999999.*********************.******************9988 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 1.8e-06
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLre 53 
                 L +L L    l +i++ aF+ +++L+ L+L    l++i  +af g++sL +
  MMETSP0890-20130614|1812_1 120 LNRLTLPAG-LITIGEYAFSWCTSLTQLSLP-AGLTTIGVHAFVGCTSLNQ 168
                 667888888.99*******************.****************976 PP

>> PF06364.7  Protein of unknown function (DUF1068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.028   1.3e+02      46      66 ..      20      40 ..       6      54 .. 0.75
   2 ?    6.1   0.3    0.0015         7      37      71 ..      58      94 ..      49      99 .. 0.71
   3 ?   -2.3   0.0      0.56   2.5e+03      50      64 ..     116     130 ..     108     144 .. 0.76
   4 ?   -2.9   0.0      0.84   3.8e+03      51      65 ..     140     154 ..     135     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.028
   PF06364.7 46 acdcdcsalplltlpkelsna 66
                a   +c +l+ ltlp +l+  
  MMETSP0890-20130614|1812_1 20 AAFVNCTSLTHLTLPAGLTTI 40
                66789**********999764 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0015
   PF06364.7 37 arvsasscpacdcdcsalplltlpkels...nasfedc 71
                a +++  c a  c cs+l+ +tlp +l+   + +f  c
  MMETSP0890-20130614|1812_1 58 AGLTTIGCFA-FCGCSSLTQITLPAGLTtigDDAFRGC 94
                5555556655.6************99861113455555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.56
   PF06364.7  50 dcsalplltlpkels 64 
                  c +l+ ltlp +l 
  MMETSP0890-20130614|1812_1 116 GCASLNRLTLPAGLI 130
                 599999999998874 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 0.84
   PF06364.7  51 csalplltlpkelsn 65 
                 c +l+ l+lp +l+ 
  MMETSP0890-20130614|1812_1 140 CTSLTQLSLPAGLTT 154
                 888888999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.59
# Mc/sec: 751.40
//
Query:       MMETSP0890-20130614|1815_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        8.8    4.1   8.7         24    2.7   6.0    1.6  1  PF00523.13 Fusion glycoprotein F0


Domain annotation for each model (and alignments):
>> PF00523.13  Fusion glycoprotein F0
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   6.0    0.0017        24     103     149 ..     309     355 ..     305     361 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0017
                 XXXXXX-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
  PF00523.13 103 ataAqiTAgvAlvkanenaaainklknslqkTnkAveevqngvqela 149
                 ataA+ +Ag++++ a ++   ++ +++++    +Av++v+++ ++l 
  MMETSP0890-20130614|1815_1 309 ATAAALAAGISVATAGAAVPIVAPIAAAVVGGSAAVAAVTQSNRNLR 355
                 9*****************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1418  (0.103716); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:01.04
# Mc/sec: 1131.36
//
Query:       MMETSP0890-20130614|1818_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 298.72
//
Query:       MMETSP0890-20130614|1817_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-05   23.8   2.3    0.00013   22.1   1.6    1.9  1  PF01549.19 ShK domain-like
  ------ inclusion threshold ------
      0.058   13.2   1.4      0.085   12.6   0.0    1.9  2  PF09372.5  PRANC domain


Domain annotation for each model (and alignments):
>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   1.6   1.8e-08   0.00013       4      36 ..     319     349 ..     317     350 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.8e-08
  PF01549.19   4 DpnsdCaawasngfCnnsayqdlmkqnCpktCg 36 
                 D++ +C +wa++g+C+ ++   +m++ C   C 
  MMETSP0890-20130614|1817_1 319 DSHDWCGRWARLGECQTNP--NYMNAKCSLHCQ 349
                 99****************9..*******99996 PP

>> PF09372.5  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.4   9.7e+03      35      45 ..     276     286 ..     259     293 .. 0.51
   2 ?   12.6   0.0   1.2e-05     0.085      16      66 ..     338     388 ..     332     395 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.4
   PF09372.5  35 piYgklikkii 45 
                 + +gk i k+i
  MMETSP0890-20130614|1817_1 276 NSFGKKIVKNI 286
                 33444444443 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.2e-05
   PF09372.5  16 inllarlvnnkkikklkkfpiYgklikkiikkaierkeliekaikvinnll 66 
                 + + a++  + ++  ++  piYg+ ik+++++a++r+++ + ++++++ l 
  MMETSP0890-20130614|1817_1 338 NYMNAKCSLHCQLHTYQGKPIYGDEIKNFLEQAEKRDQISKCIVDTLSALA 388
                 3678889999999999999*************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:01.11
# Mc/sec: 1485.31
//
Query:       MMETSP0890-20130614|1822_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-50  170.6   0.0    2.8e-48  164.2   0.0    2.3  1  PF00069.20 Protein kinase domain
    3.7e-31  108.0   0.0    1.5e-23   83.1   0.0    2.2  2  PF07714.12 Protein tyrosine kinase
    0.00089   18.9   0.0     0.0017   18.0   0.0    1.5  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   6.1e-52   2.8e-48       3     250 ..      91     379 ..      89     390 .. 0.89

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 6.1e-52
                 EEEEEE----EEEEEEEETTCCE.EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH....HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE............................................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHH.HHHT-SSGGGS-- CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgk.kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk....kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl............................................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdli.kkllekdpakRlt 250
                 +leklGsGsfG+Vy a+ ++ g   +AvK +kk+   ++ + ++v+ E +++++l++p+i+kl  +f++++ lyl ++y+ gg+l+dllk    + + +    i++++ +i+ +leyl ++g+iHrD+Kp+NiLl+ +g++ +aDFG+a                                                +    ++ + gt+ Y APE+l  ++ y +++D+WslG++lyel  g+ pf  +   ++++l+++il+ ++++  p      + l dl+ + ll  +p++R +
  MMETSP0890-20130614|1822_1  91 VLEKLGSGSFGTVYLARISGGGGaLFAVKSIKKNLIIKTRSAHNVKrERSLTRELNSPFILKLRTAFQTSNALYLATDYYAGGSLADLLKrkqqDGTGICILAIRFFTIEIVLALEYLRQKGVIHRDIKPSNILLSAHGHIALADFGVATYSgpsfkrssetssfkkknknfaatpsstvqmlknrskkdtrkkhqDEAWLVASGFHGTPAYTAPELLS-GEIYNHSIDWWSLGCTLYELRVGHSPFAAA---NARNLFRNILHARIPKILP------KPLHDLLtTGLLVLNPKQRFS 379
                 789************9987765449*********9999888887777*******************************************887667778999***********************************************977************************************999864332233367899*************.****************************99...999*******988888777......446666515688888888877 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   3.3e-27   1.5e-23       2     153 ..      90     242 ..      89     280 .. 0.86
   2 !   23.0   0.0   7.3e-09   3.3e-05     160     238 ..     291     365 ..     277     382 .. 0.74

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 3.3e-27
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi 153
                 ++ +klG+G+fG+V+ ++++          avK++k+    + ++ +++ +e ++ ++l+ p i+kl  ++ +++ l++ t+y +gG+L ++L++k  + + +++  +  f+++i  ++eyL +k ++Hrd+   N+Ll+ + ++ ++DfG+a   
  MMETSP0890-20130614|1822_1  90 DVLEKLGSGSFGTVYLARIS---GGGGALFAVKSIKKnlIIKTRSAHNVKRERSLTRELNSPFILKLRTAFQTSNALYLATDYYAGGSLADLLKRKqqDGTGICILAIRFFTIEIVLALEYLRQKGVIHRDIKPSNILLSAHGHIALADFGVATYS 242
                 5789****************...8888999*****88343455568999*********************************************99334456778888899*****************************************9877 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 7.3e-09
                 EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHH CS
  PF07714.12 160 kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelm 238
                  + ++ +    ++apE+l+ + +++  D Ws G++l+E+   g+sp++  +++++++++    + + p+  p+ l++l+
  MMETSP0890-20130614|1822_1 291 LVASGFHGTPAYTAPELLSGEIYNHSIDWWSLGCTLYELRV-GHSPFAAANARNLFRNIL---HARIPKILPKPLHDLL 365
                 555556667789**************************987.99***9998887666553...3445555555555555 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.7e-07    0.0017     158     200 ..     204     244 ..     131     246 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.7e-07
                 HHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-T CS
  PF01636.18 158 allpgaeppvllHgDlhpgNllvdpddgrvgviDfedaglgpp 200
                 al    ++++++H+D++p N+l+   +g++++ Df+ a+++ p
  MMETSP0890-20130614|1822_1 204 ALEY-LRQKGVIHRDIKPSNILLS-AHGHIALADFGVATYSGP 244
                 4444.47899**************.88999*********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:01.38
# Mc/sec: 875.19
//
Query:       MMETSP0890-20130614|1824_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-45  155.4   0.0    1.7e-45  155.0   0.0    1.2  1  PF02774.13 Semialdehyde dehydrogenase, dimerisation domain
    3.8e-22   78.7   0.0    6.5e-22   77.9   0.0    1.4  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.03   14.1   0.0      0.057   13.2   0.0    1.5  1  PF13460.1  NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF02774.13  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   3.7e-49   1.7e-45       1     183 [.     139     341 ..     139     342 .. 0.95

  Alignments for each domain:
  == domain 1    score: 155.0 bits;  conditional E-value: 3.7e-49
                 HHHHHHHTT.EEEEEEEEEEE------HHHCCCHHH..............HHHHHHSTTS.GCCCCCCCCCGGBSTCSTBCCTCHHHCHHHHCCCHHHHHHCCETE..CEE.......EEEEEESCEC--EEEEEEEESCSHHHHHHHHHHHHTTSSCEEEES-.CCCCCCHHHHTT---SEEEE-EEEETTCCE.EEEEEEEESTTT CS
  PF02774.13   1 LkPLldalgelervivatyqavSGaGkkgvreLlkq..............vaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte..kvs.......atcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvne.eedrPtpaavaggtnsvsVGRirkdemgde.glklvvvgDNll 183
                 L+PL+ a ++l++v+v+tyqa+SGaG++g++eL +               +   + +++++++vf  p+ +N+ip+idk++++g  +t+ee+k  +etkkil+f +  + s        t+vr+P lr hsea+ti++ +++++ +++++ la+a++vk+++++ ++ +P+p+ ++g  ++v VGRir+  ++ e gl+++v gD+ll
  MMETSP0890-20130614|1824_1 139 LAPLFFA-FGLKKVVVSTYQAASGAGAAGMQELKSGvamladnqnhcirdDGCFESDRAFPNEVFAHPLPFNVIPHIDKFQENG--YTKEEMKVTWETKKILGFDPydEESescpkvsCTAVRIPTLRAHSEAITIET-REPITPAAARQVLADAQGVKLIDQPeKNIYPMPLSATG-AYDVEVGRIRQSIVFGEhGLDFFVCGDQLL 341
                 89****9.88**************************************98777889999*************************..******************99875557788888999*****************.5************************9999********9.7***********998776***********8 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   1.4e-25   6.5e-22       1     120 [.       4     121 ..       4     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 1.4e-25
                 EEEEB--------HHHHHHHC..TSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEEGCGCCCTC-SEEEE---HHHHHHHHHCH...HHTTSEEEE-SSTTTTSTTSBB--HHHHHHHHGT CS
  PF01118.19   1 kvaivGatGyvGqellrlLee..hpelelvalvassrsaGkklaeahkaleegkdlvledadeeelkevdivflalpagvskelapkl...leagvkviDlssafRldddapyglpevnreaikk 120
                 kv+ivGatG+vG+ell +Le+   p  +  al++s+   Gkk+++          l++++ + e+l++ d+ fla++++ +ke+a+k+   l+++  v+D+ssa+Rld+++p+++pevn ++ k+
  MMETSP0890-20130614|1824_1   4 KVGIVGATGAVGAELLGVLEKreFPVTDKPALFGSKG--GKKVESSRW-----GSLEVSKFEVEALRGYDVCFLAASGDFAKEYAAKIadvLSEKGLVVDNSSALRLDPEVPLVVPEVNGDKCKG 121
                 8********************9445567778888887..*****9966.....677777777799**********************9665556669**********************999876 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.057       1      89 [.       5      92 ..       5     121 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
   PF13460.1  1 IaviGAtGktGrrivkellarghevt.....alvRnpsklpessgvtivkkDlfdledlaealagvdvvvdafgarpedregvkhlldalkaag 89
                + ++GAtG +G +++  l +r + vt       +   +k++ ss+   ++++ f+     eal+g+dv ++a++ ++ ++e +++++d+l++ g
  MMETSP0890-20130614|1824_1  5 VGIVGATGAVGAELLGVLEKREFPVTdkpalFGSKGGKKVE-SSRWGSLEVSKFE----VEALRGYDVCFLAAS-GDFAKEYAAKIADVLSEKG 92
                679*******************9999666422334455555.4444444444444....589***********9.6778999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.93
# Mc/sec: 919.89
//
Query:       MMETSP0890-20130614|1826_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 665.65
//
Query:       MMETSP0890-20130614|1825_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-63  214.0   0.0    2.3e-63  213.4   0.0    1.3  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      1e-25   90.2   0.0    1.8e-25   89.5   0.0    1.4  1  PF00306.22 ATP synthase alpha/beta chain, C terminal domain
    6.3e-23   80.6   2.1    1.5e-22   79.4   1.2    1.9  2  PF02874.18 ATP synthase alpha/beta family, beta-barrel domain
  ------ inclusion threshold ------
      0.014   14.9   0.2          8    6.0   0.0    3.2  3  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.074   13.3   0.0       0.18   12.0   0.0    1.6  1  PF13191.1  AAA ATPase domain
      0.094   11.9   0.1       0.26   10.5   0.0    1.7  2  PF13481.1  AAA domain
       0.11   11.2   0.1       0.32    9.8   0.1    1.6  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
       0.14   11.6   0.0        0.3   10.6   0.0    1.5  1  PF01637.13 Archaeal ATPase


Domain annotation for each model (and alignments):
>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.0   1.3e-66   2.3e-63       1     215 []     164     388 ..     164     388 .. 0.94

  Alignments for each domain:
  == domain 1    score: 213.4 bits;  conditional E-value: 1.3e-66
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20   1 tgirvlDslfPivqGqttlipGafgcGktvisqslsknsnsdai...iyvgiGergnevaevleef..........rkepimkrttlvantsnepvaareasiytgitlAeyfrd.qgknVlliaDslsrwaealreisgrlgempadqgypaylgaklaslyeRagkagspdriGSvtivaavspaggdfsdpvttstlgitdvfivLdkklaqrkhfPaintlvSyS 215
                 tgi+v+D+l P ++G++++++G++g+Gktv++++l++n+ +++    +++g+Ger +e +++++e+          +++   ++ +lv+ ++nep+ ar +++ tg+t+Aeyfrd +g++Vl+++D++ r+++a  e+s++lg++p+  gy+++l++++  l+eR++++     +GS+t+v+av+++++d++dp + +t++++d + vL++++a+ +++Pa+++l S S
  MMETSP0890-20130614|1825_1 164 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNHGgysVFAGVGERTREGNDLYHEMiesgvikiseSGNTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDeEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGGLQERITST----TKGSITSVQAVYVPADDLTDPAPATTFAHLDAQTVLSRDIASLGIYPAVDPLDSSS 388
                 8**************************************76655569*******************5555555554444444999************************************************************************************....******************************************************88 PP

>> PF00306.22  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0     1e-28   1.8e-25       2     111 ..     402     506 ..     401     508 .] 0.95

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 1e-28
                 HHHHHHHHHHHHHHHHHCCHHH--.TTS-HHHHHHHHHHHHHHHHT---TTGGG..........-.HHHHHHHHHHCC----TTS-GGGHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00306.22   2 qvagklkleLaqyrElaafvqlvGsdaLseedkltlerarrleefLkQnqyspl...pvekqvvsiveetidlfyallrgklddlpeeelekigtkdiekelnkeleeklkkl 111
                  va+++++ L+ y+ l+++++++G+d+Lse+dklt++rar++ +fL+Q++++++   ++++++v+ +e++i+ f+++l+g +ddlpe++++++g +d+        +ek+k+l
  MMETSP0890-20130614|1825_1 402 TVARSVQKLLQDYKSLQDIIAILGMDELSEDDKLTVSRARKVSKFLSQPFHVAEiftGFPGKFVQ-LEDSIKGFKEVLAGGYDDLPEAAFYMVGGIDDV-------IEKAKSL 506
                 79***************************************************************.****************************99999.......6666655 PP

>> PF02874.18  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.2   7.1e+03      19      43 ..       4      26 ..       2      30 .. 0.75
   2 !   79.4   1.2   8.6e-26   1.5e-22       1      69 []      42     108 ..      42     108 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4.2
                --TTTEEEEEEEEES-EEEEEEEEE CS
  PF02874.18 19 pgiynalkvelvefgklvlgvalnl 43
                +++ + + ++l++  + v+gv+ +l
  MMETSP0890-20130614|1825_1  4 YRVSTTIIIKLSN--EDVKGVINRL 26
                6777778888888..8899988776 PP

  == domain 2    score: 79.4 bits;  conditional E-value: 8.6e-26
                 ETCC---EEEEE-STTEE--TTTEEEEEEEEES-EEEEEEEEE-SSEEEEEEB---TT-B----EEEEE CS
  PF02874.18   1 ivqviGpVvdvefgigrlpgiynalkvelvefgklvlgvalnlgddkVriiamgstdGlkrGdeVkdTG 69 
                 i++viG+Vvdv+f  g lp i nal+++ ++ g+lvl+va++lg+ +Vr+iam++t+Gl+rG+e++dTG
  MMETSP0890-20130614|1825_1  42 ITSVIGAVVDVQFADG-LPPIMNALETQTEN-GRLVLEVAQHLGEKTVRTIAMDATEGLVRGQEIVDTG 108
                 89**************.***********777.************************************9 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0047         8       6      28 ..     184     206 ..     180     234 .. 0.75
   2 ?    0.2   0.0      0.29     5e+02      51      71 ..     291     312 ..     264     330 .. 0.72
   3 ?    4.3   0.0     0.016        27      80     121 ..     404     446 ..     391     465 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0047
                 E-------HHHHHHHHHHHHH-- CS
   PF03205.9   6 vGpkdsGKTtlieklvnklkerg 28 
                  G  ++GKT +i +l+n +  ++
  MMETSP0890-20130614|1825_1 184 FGGAGVGKTVVIMELINNIATNH 206
                 68889***********9987654 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.29
                 THHH.H----EEEEE-SSEEEE CS
   PF03205.9  51 twrl.kagadlvlvsieeplav 71 
                  +r+ +aga+++++ ++ p av
  MMETSP0890-20130614|1825_1 291 IFRFtQAGAEVSALLGRIPSAV 312
                 57999********998876555 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.016
                 ---HHHHHHCS-..-S-EEEE---S.--SEEEEEE-------GG CS
   PF03205.9  80 eadLeallsvls..vDlvlveGfkspkenpkivivkseeeveel 121
                 + ++++ll++++   D++ + G  + +e++k+ +++   +v ++
  MMETSP0890-20130614|1825_1 404 ARSVQKLLQDYKslQDIIAILGMDELSEDDKLTVSR-ARKVSKF 446
                 445668999999999**************9988888.4455544 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.18      28     103 ..     183     250 ..     167     313 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
   PF13191.1  28 vtGpsGiGKSsLlrelakpille.rlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga 103
                 + G +G+GK++++ el+ +i+ + +++   +++ + +r+           +l+ + +   + ++++ +    ++++ 
  MMETSP0890-20130614|1825_1 183 LFGGAGVGKTVVIMELINNIATNhGGYSVFAGVGERTRE---------GNDLYHEMIESGVIKISESGNTEGSKAAL 250
                 789************888888776777777888877777.........66666666666666666666655554444 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00015      0.26      26      61 ..     172     206 ..     148     230 .. 0.73
   2 ?   -3.7   0.0       3.5     6e+03      82     106 ..     400     423 ..     395     443 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
   PF13481.1  26 vkgllprgsltllaGapgtGKStlalqlaaavatGe 61 
                 +  + ++g+ + l+G  g+GK+ +++ l+ ++at +
  MMETSP0890-20130614|1825_1 172 LAPY-AKGGKIGLFGGAGVGKTVVIMELINNIATNH 206
                 4445.4799999*********************543 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.5
   PF13481.1  82 seaelrrrlsailaalddpenlllv 106
                  + +++r ++++l++++  ++  ++
  MMETSP0890-20130614|1825_1 400 HY-TVARSVQKLLQDYKSLQDIIAI 423
                 44.7888888888888554444433 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00019      0.32       8      44 ..     185     220 ..     183     247 .. 0.82
   2 ?   -2.3   0.0      0.87   1.5e+03     158     212 ..     271     331 ..     234     336 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00019
   PF09848.4   8 GvaGtGKtvvalnllaeledseeertavflsgNhplv 44 
                 G+aG GKtvv ++l++++  ++++ ++vf+ + ++ +
  MMETSP0890-20130614|1825_1 185 GGAGVGKTVVIMELINNI-ATNHGGYSVFAGVGERTR 220
                 9*****************.888888888887766654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.87
   PF09848.4 158 hLksqfRsaaseayiewvdalldkkkekakplss......qedyeikvfddleelkkaike 212
                 + ++ fR + +++++ +vd++++  + +a+  +         +y+  ++ d+  l++ i +
  MMETSP0890-20130614|1825_1 271 TIAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALlgripsAVGYQPTLATDMGGLQERITS 331
                 6778899999999999999999888877766655677776667777777777777776665 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017       0.3      25      70 ..     183     231 ..     179     312 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
                 EE--TT---HHHHHHHHHH-...---HHHHH------HHHH..HHHH.. CS
  PF01637.13  25 iyGprrsGKTaLlkeileel.kekgkrvvyyinlreefesk..leefie 70 
                 ++G  ++GKT ++ e++++   ++g + v+    ++++e +  + e+ie
  MMETSP0890-20130614|1825_1 183 LFGGAGVGKTVVIMELINNIaTNHGGYSVFAGVGERTREGNdlYHEMIE 231
                 7999****************66666699999888877664321555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.97
# Mc/sec: 1255.00
//
Query:       MMETSP0890-20130614|1827_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-15   54.9   8.8    8.8e-15   54.5   6.1    1.1  1  PF03151.11 Triose-phosphate Transporter family
    8.8e-05   21.4   4.4    0.00011   21.1   3.0    1.1  1  PF08449.6  UAA transporter family
     0.0083   16.0  16.4      0.013   15.4  11.4    1.2  1  PF00892.15 EamA-like transporter family


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   6.1   1.9e-18   8.8e-15      34     152 ..      87     198 ..      76     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.9e-18
  PF03151.11  34 dplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervS.sltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                 d   +++++   a+i+l++++ l++  +    ++ ++        + +++l +++++++++ + ++++le +S ++t+ va+++kr++viv+++i+f+++i ++n++G++i ++G++lY 
  MMETSP0890-20130614|1827_1  87 DTNSVFFITNAFALILLIPIWSLFDPTA---IVDLYRG-----GFKLIATLGIASLAVVAQHFASISVLEAAStPITHAVASTFKRIFVIVFAIIWFQQTIAPMNAIGIFISVFGIFLYD 198
                 55667899999***************99...3333444.....6799***********************99857********************************************7 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   3.0   2.4e-08   0.00011     184     301 ..      88     203 ..      73     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.4e-08
   PF08449.6 184 skemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallkkk 301
                  +++ f++++++l++++ +++  +   + + ++  +k+  +l+ + l +++q++   ++ +l a+++++t ++  t  +++ +++ +++F++++++   +G+++ ++gi+l+  +++k
  MMETSP0890-20130614|1827_1  88 TNSVFFITNAFALILLIPIWSLFDPTAIVDLYRGGFKLIATLGIASLAVVAQHFA--SISVLEAASTPITHAVASTFKRIFVIVFAIIWFQQTIAPMNAIGIFISVFGIFLYDRAGRK 203
                 4778999********999999988888889999999999**************97..667788999*********************************************9887776 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  11.4   2.8e-06     0.013      16     123 ..      85     196 ..      71     197 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.8e-06
  PF00892.15  16 svspltitayrlliagillilllfllrep...ialislkdilallllgllgtvlgyllffya...lkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                 s+++ ++ +++  +a+  ++l++++   +   i  + ++ ++ ++ lg+ + ++    f+        +++ + ++ +++  +f+i+++++++++++ ++  +gi+++++G++l
  MMETSP0890-20130614|1827_1  85 SLDTNSVFFITNAFAL--ILLIPIWSLFDptaIVDLYRGGFKLIATLGIASLAVVAQHFASIsvlEAASTPITHAVASTFKRIFVIVFAIIWFQQTIAPMNAIGIFISVFGIFL 196
                 3666677777777777..555555555555778899999999999999998776655555444534455566678888899*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 650.44
//
Query:       MMETSP0890-20130614|1823_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-106  347.6  31.8    1.1e-26   92.8   1.8    5.5  6  PF12796.2  Ankyrin repeats (3 copies)
    6.7e-89  287.4  25.5    2.1e-11   42.9   0.1    9.6  9  PF00023.25 Ankyrin repeat
    6.1e-66  211.6  12.8    7.9e-09   34.8   0.0    9.6  9  PF13606.1  Ankyrin repeat
    1.1e-64  212.8  39.3    4.7e-12   45.6   0.3    9.1 10  PF13857.1  Ankyrin repeats (many copies)
    7.7e-64  210.9  21.8    2.7e-15   56.2   0.1    7.7  8  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.011   14.8   2.5       0.02   13.9   1.8    1.4  1  PF10234.4  Clusterin-associated protein-1
      0.016   14.2   4.5       0.04   13.0   3.1    1.7  1  PF05149.7  Paraflagellar rod protein
      0.023   14.0   1.7         12    5.3   0.0    4.8  6  PF12854.2  PPR repeat
      0.053   11.8   4.4      0.089   11.1   2.7    1.6  1  PF13166.1  AAA domain
        3.1    7.5   9.6        0.6    9.8   2.0    2.7  3  PF06009.7  Laminin Domain II


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   7.4e-17     1e-13      30      87 ..       9      66 ..       5      68 .. 0.95
   2 !   78.3   0.7   2.7e-25   3.7e-22      15      89 .]      56     134 ..      56     134 .. 0.96
   3 !   90.6   1.8     4e-29   5.5e-26       1      89 []      75     167 ..      75     167 .. 0.94
   4 !   92.8   1.8   7.9e-30   1.1e-26       1      89 []     141     233 ..     141     233 .. 0.97
   5 !   87.4   0.7   3.8e-28   5.3e-25       1      89 []     207     299 ..     207     299 .. 0.97
   6 ?   -3.1   0.0       6.6     9e+03      60      78 ..     305     323 ..     300     329 .. 0.75

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 7.4e-17
   PF12796.2 30 LhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87
                L  Aae+g +++v+ L++ ga+ +a++k+g+tpLh+A+++gh+++++lLl+kga+v++
  MMETSP0890-20130614|1823_1  9 LLEAAEKGETATVERLIAEGANTEATNKDGWTPLHYACCFGHTDTARLLLDKGANVDA 66
                5679****************************************************97 PP

  == domain 2    score: 78.3 bits;  conditional E-value: 2.7e-25
   PF12796.2  15 lLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                 lLl+kga+vd     g+tpLh+A+ +g+++++klLl++ a+ +a+ ++g+tpLh+A++ngh+++vklLle+ga v++++
  MMETSP0890-20130614|1823_1  56 LLLDKGANVDAtrkcGSTPLHAACYNGHTDTAKLLLDKDANTEATYNNGWTPLHYACQNGHTDTVKLLLENGAMVDATN 134
                 69********99999999*******************************************************998765 PP

  == domain 3    score: 90.6 bits;  conditional E-value: 4e-29
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                 Lh A+ ng+ +++klLl+k a+ +     g tpLh+A+++g++++vklLle+ga v+a++++g tpLh A+ ngh+++++lLle+ga+v+++d
  MMETSP0890-20130614|1823_1  75 LHAACYNGHTDTAKLLLDKDANTEAtynnGWTPLHYACQNGHTDTVKLLLENGAMVDATNEDGITPLHSACYNGHTDTARLLLENGANVDATD 167
                 8***********************76544555*********************************************************9876 PP

  == domain 4    score: 92.8 bits;  conditional E-value: 7.9e-30
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                 Lh A+ ng+ ++++lLle+ga+vd     ++tpLh+A+++g++++++lLl++ a+v+ak+k g tpLh+A++ngh++++ lLl+k+a+v++++
  MMETSP0890-20130614|1823_1 141 LHSACYNGHTDTARLLLENGANVDAtdkdSSTPLHVACCNGHTDTARLLLDKDANVDAKSKWGSTPLHAACQNGHTDTATLLLDKDANVDAKN 233
                 8***********************88877777**********************************************************987 PP

  == domain 5    score: 87.4 bits;  conditional E-value: 3.8e-28
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                 Lh A++ng+ +++ lLl+k a+vd     g tpLh+A+ +g++++ +lLl++ a+ +a+dk+g+tpLhlA+++g +++++lLl+kga+  +++
  MMETSP0890-20130614|1823_1 207 LHAACQNGHTDTATLLLDKDANVDAknkwGTTPLHCACYKGHTDTTRLLLDKDANTEATDKDGYTPLHLACCFGYTDIARLLLDKGANRKVKN 299
                 8***********************99999999*******************************************************988775 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 6.6
   PF12796.2  60 ntpLhlAvrnghlelvklL 78 
                 +tp  +A  ng ++l+kl 
  MMETSP0890-20130614|1823_1 305 RTPAQIARWNGYTDLAKLV 323
                 5777778888888888764 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0051         7       8      33 .]      11      36 ..       9      36 .. 0.91
   2 !   42.4   0.0   2.1e-14   2.9e-11       1      31 [.      37      67 ..      37      69 .. 0.97
   3 !   29.1   0.1   3.6e-10     5e-07       2      30 ..      71      99 ..      70     102 .. 0.92
   4 !   42.9   0.1   1.5e-14   2.1e-11       1      32 [.     103     134 ..     103     135 .. 0.97
   5 !   42.3   0.2   2.3e-14   3.2e-11       1      33 []     136     168 ..     136     168 .. 0.98
   6 !   33.4   0.1   1.6e-11   2.2e-08       4      32 ..     172     200 ..     169     201 .. 0.94
   7 !   34.8   0.1   5.3e-12   7.3e-09       2      33 .]     203     234 ..     202     234 .. 0.96
   8 !   30.1   0.0   1.7e-10   2.3e-07       2      33 .]     236     267 ..     235     267 .. 0.95
   9 !   37.6   0.0   7.2e-13   9.9e-10       1      33 []     268     300 ..     268     300 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0051
                HHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25  8 lAalrgnlevvklLlsqGAdlnaqdd 33
                 Aa++g +  v+ L+  GA+  a+++
  MMETSP0890-20130614|1823_1 11 EAAEKGETATVERLIAEGANTEATNK 36
                69*******************99986 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 2.1e-14
                TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25  1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31
                dG+TPLH+A++ g+++ ++lLl++GA+++a+
  MMETSP0890-20130614|1823_1 37 DGWTPLHYACCFGHTDTARLLLDKGANVDAT 67
                8****************************96 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 3.6e-10
                SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdlna 30
                G TPLH A+++g+++ +klLl++ A+  a
  MMETSP0890-20130614|1823_1 71 GSTPLHAACYNGHTDTAKLLLDKDANTEA 99
                99***********************9877 PP

  == domain 4    score: 42.9 bits;  conditional E-value: 1.5e-14
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +G+TPLH+A+++g+++ vklLl++GA ++a++
  MMETSP0890-20130614|1823_1 103 NGWTPLHYACQNGHTDTVKLLLENGAMVDATN 134
                 7****************************998 PP

  == domain 5    score: 42.3 bits;  conditional E-value: 2.3e-14
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 dG TPLH A+++g+++ ++lLl++GA+++a+d+
  MMETSP0890-20130614|1823_1 136 DGITPLHSACYNGHTDTARLLLENGANVDATDK 168
                 8*****************************996 PP

  == domain 6    score: 33.4 bits;  conditional E-value: 1.6e-11
                 BHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 TPLH+A+++g+++ ++lLl++ A+++a+ 
  MMETSP0890-20130614|1823_1 172 TPLHVACCNGHTDTARLLLDKDANVDAKS 200
                 ***************************86 PP

  == domain 7    score: 34.8 bits;  conditional E-value: 5.3e-12
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 G TPLH A+++g+++ ++lLl++ A+++a+++
  MMETSP0890-20130614|1823_1 203 GSTPLHAACQNGHTDTATLLLDKDANVDAKNK 234
                 89****************************96 PP

  == domain 8    score: 30.1 bits;  conditional E-value: 1.7e-10
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 G TPLH+A+++g+++  +lLl++ A+  a+d+
  MMETSP0890-20130614|1823_1 236 GTTPLHCACYKGHTDTTRLLLDKDANTEATDK 267
                 89*************************99986 PP

  == domain 9    score: 37.6 bits;  conditional E-value: 7.2e-13
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 dG+TPLHlA++ g++++++lLl++GA+  ++++
  MMETSP0890-20130614|1823_1 268 DGYTPLHLACCFGYTDIARLLLDKGANRKVKNN 300
                 8**************************888775 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.19   2.6e+02       6      27 ..       9      30 ..       6      33 .. 0.90
   2 !   30.0   0.0   1.9e-10   2.6e-07       1      30 []      37      66 ..      37      66 .. 0.96
   3 !   23.0   0.0   3.5e-08   4.8e-05       2      27 ..      71      96 ..      70      99 .. 0.92
   4 !   34.8   0.0   5.7e-12   7.9e-09       1      26 [.     103     128 ..     103     132 .. 0.95
   5 !   32.1   0.0   4.3e-11   5.9e-08       1      30 []     136     165 ..     136     165 .. 0.95
   6 !   22.9   0.0     4e-08   5.5e-05       4      30 .]     172     198 ..     169     198 .. 0.95
   7 !   20.7   0.0     2e-07   0.00027       2      30 .]     203     231 ..     202     231 .. 0.94
   8 !   21.6   0.0     1e-07   0.00014       2      27 ..     236     261 ..     235     264 .. 0.93
   9 !   23.1   0.0   3.4e-08   4.6e-05       1      27 [.     268     294 ..     268     297 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.19
   PF13606.1  6 LhlAasngrielveaLlengad 27
                L  Aa++g ++ ve L+  ga+
  MMETSP0890-20130614|1823_1  9 LLEAAEKGETATVERLIAEGAN 30
                678**************99987 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.9e-10
   PF13606.1  1 nGnTpLhlAasngrielveaLlengadina 30
                +G+TpLh+A+ +g+++ +++Ll++ga+++a
  MMETSP0890-20130614|1823_1 37 DGWTPLHYACCFGHTDTARLLLDKGANVDA 66
                79*************************985 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 3.5e-08
   PF13606.1  2 GnTpLhlAasngrielveaLlengad 27
                G TpLh A++ng+++ +++Ll++ a+
  MMETSP0890-20130614|1823_1 71 GSTPLHAACYNGHTDTAKLLLDKDAN 96
                78********************9987 PP

  == domain 4    score: 34.8 bits;  conditional E-value: 5.7e-12
   PF13606.1   1 nGnTpLhlAasngrielveaLlenga 26 
                 nG+TpLh+A++ng+++ v++Llenga
  MMETSP0890-20130614|1823_1 103 NGWTPLHYACQNGHTDTVKLLLENGA 128
                 8************************7 PP

  == domain 5    score: 32.1 bits;  conditional E-value: 4.3e-11
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                 +G TpLh A++ng+++ +++Llenga+++a
  MMETSP0890-20130614|1823_1 136 DGITPLHSACYNGHTDTARLLLENGANVDA 165
                 699************************985 PP

  == domain 6    score: 22.9 bits;  conditional E-value: 4e-08
   PF13606.1   4 TpLhlAasngrielveaLlengadina 30 
                 TpLh+A+ ng+++ +++Ll++ a+++a
  MMETSP0890-20130614|1823_1 172 TPLHVACCNGHTDTARLLLDKDANVDA 198
                 9***********************985 PP

  == domain 7    score: 20.7 bits;  conditional E-value: 2e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                 G TpLh A++ng+++ + +Ll++ a+++a
  MMETSP0890-20130614|1823_1 203 GSTPLHAACQNGHTDTATLLLDKDANVDA 231
                 67************************985 PP

  == domain 8    score: 21.6 bits;  conditional E-value: 1e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                 G TpLh+A+++g+++  ++Ll++ a+
  MMETSP0890-20130614|1823_1 236 GTTPLHCACYKGHTDTTRLLLDKDAN 261
                 78********************9987 PP

  == domain 9    score: 23.1 bits;  conditional E-value: 3.4e-08
   PF13606.1   1 nGnTpLhlAasngrielveaLlengad 27 
                 +G+TpLhlA+ +g ++++++Ll++ga+
  MMETSP0890-20130614|1823_1 268 DGYTPLHLACCFGYTDIARLLLDKGAN 294
                 79***********************97 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.2e-06    0.0071      23      56 .]      12      45 ..      12      45 .. 0.92
   2 !   23.4   0.1   3.3e-08   4.5e-05       1      43 [.      24      65 ..      24      66 .. 0.90
   3 !   39.7   0.2   2.4e-13   3.3e-10       1      53 [.      57     108 ..      57     108 .. 0.98
   4 !   37.9   0.5   8.6e-13   1.2e-09       1      54 [.      90     142 ..      90     142 .. 0.95
   5 !   22.5   0.0   6.3e-08   8.6e-05      18      48 ..     139     169 ..     137     170 .. 0.96
   6 !   45.6   0.3   3.5e-15   4.7e-12       1      56 []     156     210 ..     156     210 .. 0.98
   7 !   40.1   0.4   1.8e-13   2.4e-10       1      56 []     189     243 ..     189     243 .. 0.98
   8 !   41.3   0.1   7.4e-14     1e-10       1      53 [.     222     273 ..     222     273 .. 0.98
   9 !   38.7   0.2   4.9e-13   6.7e-10       1      48 [.     255     301 ..     255     311 .. 0.90
  10 ?   -2.1   0.0       3.4   4.7e+03      11      33 ..     303     321 ..     300     322 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.2e-06
   PF13857.1 23 AakggalevvrlLlapgadlnlrdsdgltaldlA 56
                Aa++g +  v+ L+a ga++ ++++dg+t+l++A
  MMETSP0890-20130614|1823_1 12 AAEKGETATVERLIAEGANTEATNKDGWTPLHYA 45
                6777778889***********************9 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 3.3e-08
   PF13857.1  1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadln 43
                L+++g a+  at++ g tpLh+A+  g+++ +rlLl++ga+ +
  MMETSP0890-20130614|1823_1 24 LIAEG-ANTEATNKDGWTPLHYACCFGHTDTARLLLDKGANVD 65
                67788.99999999999*******************9999865 PP

  == domain 3    score: 39.7 bits;  conditional E-value: 2.4e-13
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                 Ll++g a+v+at+++g+tpLh A+++g+++ ++lLl++ a++ ++ ++g+t+l
  MMETSP0890-20130614|1823_1  57 LLDKG-ANVDATRKCGSTPLHAACYNGHTDTAKLLLDKDANTEATYNNGWTPL 108
                 89***.**********************************************8 PP

  == domain 4    score: 37.9 bits;  conditional E-value: 8.6e-13
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                 Ll+++ a+  at+++g tpLh+A+ +g+++ v+lLl++ga  +++++dg t+l+
  MMETSP0890-20130614|1823_1  90 LLDKD-ANTEATYNNGWTPLHYACQNGHTDTVKLLLENGAMVDATNEDGITPLH 142
                 78888.99999999999***********************************96 PP

  == domain 5    score: 22.5 bits;  conditional E-value: 6.3e-08
   PF13857.1  18 tpLhlAakggalevvrlLlapgadlnlrdsd 48 
                 tpLh A+++g+++ +rlLl++ga+ +++d+d
  MMETSP0890-20130614|1823_1 139 TPLHSACYNGHTDTARLLLENGANVDATDKD 169
                 9***************************997 PP

  == domain 6    score: 45.6 bits;  conditional E-value: 3.5e-15
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 Lle+g a+v+atd+ ++tpLh+A+ +g+++ +rlLl++ a+ +++ ++g t+l+ A
  MMETSP0890-20130614|1823_1 156 LLENG-ANVDATDKDSSTPLHVACCNGHTDTARLLLDKDANVDAKSKWGSTPLHAA 210
                 9****.***********************************************987 PP

  == domain 7    score: 40.1 bits;  conditional E-value: 1.8e-13
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 Ll+++ a+v+a  ++g+tpLh A+ +g+++ + lLl++ a+ ++++++g t+l++A
  MMETSP0890-20130614|1823_1 189 LLDKD-ANVDAKSKWGSTPLHAACQNGHTDTATLLLDKDANVDAKNKWGTTPLHCA 243
                 89999.************************************************98 PP

  == domain 8    score: 41.3 bits;  conditional E-value: 7.4e-14
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                 Ll+++ a+v+a +++g+tpLh A+++g+++  rlLl++ a++ ++d+dg t+l
  MMETSP0890-20130614|1823_1 222 LLDKD-ANVDAKNKWGTTPLHCACYKGHTDTTRLLLDKDANTEATDKDGYTPL 273
                 89999.**********************************************8 PP

  == domain 9    score: 38.7 bits;  conditional E-value: 4.9e-13
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsd 48 
                 Ll+++ a+  atd+ g+tpLhlA+  g+++++rlLl++ga+ ++++++
  MMETSP0890-20130614|1823_1 255 LLDKD-ANTEATDKDGYTPLHLACCFGYTDIARLLLDKGANRKVKNNN 301
                 78998.**************************************9974 PP

  == domain 10    score: -2.1 bits;  conditional E-value: 3.4
   PF13857.1  11 atdeggntpLhlAakggalevvr 33 
                 + +    tp  +A ++g++++++
  MMETSP0890-20130614|1823_1 303 WVR----TPAQIARWNGYTDLAK 321
                 444....9999999999999876 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.2e-07   0.00016       6      47 ..      10      51 ..       7      52 .. 0.92
   2 !   37.8   0.0   1.2e-12   1.7e-09      11      54 .]      48      91 ..      48      91 .. 0.97
   3 !   56.2   0.1     2e-18   2.7e-15       1      54 []     104     157 ..     104     157 .. 0.98
   4 !   30.1   0.1   3.2e-10   4.4e-07      12      54 .]     148     190 ..     148     190 .. 0.98
   5 !   39.0   0.1     5e-13   6.8e-10       3      54 .]     172     223 ..     171     223 .. 0.97
   6 !   50.6   0.1   1.2e-16   1.6e-13       2      54 .]     204     256 ..     203     256 .. 0.97
   7 !   30.1   0.1   3.2e-10   4.4e-07       8      54 .]     243     289 ..     243     289 .. 0.98
   8 !   15.4   0.1   1.3e-05     0.017       1      51 [.     269     321 ..     269     322 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.2e-07
   PF13637.1  6 hyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgni 47
                  aa +g + +v+ L++ g++  +t+++G+t+Lh+A+ +g+ 
  MMETSP0890-20130614|1823_1 10 LEAAEKGETATVERLIAEGANTEATNKDGWTPLHYACCFGHT 51
                57999********************************99986 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 1.2e-12
   PF13637.1 11 sgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54
                +g++++++lLl+kg+++++t ++G t+Lh A+++g+ + +klLl
  MMETSP0890-20130614|1823_1 48 FGHTDTARLLLDKGANVDATRKCGSTPLHAACYNGHTDTAKLLL 91
                59*****************************************8 PP

  == domain 3    score: 56.2 bits;  conditional E-value: 2e-18
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 g+t+Lhya++ g++++vklLle+g+ +++t+e+G t+Lh A+++g+ + ++lLl
  MMETSP0890-20130614|1823_1 104 GWTPLHYACQNGHTDTVKLLLENGAMVDATNEDGITPLHSACYNGHTDTARLLL 157
                 69**************************************************98 PP

  == domain 4    score: 30.1 bits;  conditional E-value: 3.2e-10
   PF13637.1  12 grlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 g++++++lLle+g+++++td++  t+Lh+A+ +g+ + ++lLl
  MMETSP0890-20130614|1823_1 148 GHTDTARLLLENGANVDATDKDSSTPLHVACCNGHTDTARLLL 190
                 799**************************************98 PP

  == domain 5    score: 39.0 bits;  conditional E-value: 5e-13
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 t+Lh+a+  g++++++lLl+k+++++++ + G t+Lh A+++g+ + + lLl
  MMETSP0890-20130614|1823_1 172 TPLHVACCNGHTDTARLLLDKDANVDAKSKWGSTPLHAACQNGHTDTATLLL 223
                 89*********************************************99997 PP

  == domain 6    score: 50.6 bits;  conditional E-value: 1.2e-16
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  t+Lh a++ g+++++ lLl+k+++++++++ G+t+Lh+A+++g+ + ++lLl
  MMETSP0890-20130614|1823_1 204 STPLHAACQNGHTDTATLLLDKDANVDAKNKWGTTPLHCACYKGHTDTTRLLL 256
                 69*************************************************97 PP

  == domain 7    score: 30.1 bits;  conditional E-value: 3.2e-10
   PF13637.1   8 aaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 a+++g++++ +lLl+k+++  +td++G t+Lh+A+ +g+ +i++lLl
  MMETSP0890-20130614|1823_1 243 ACYKGHTDTTRLLLDKDANTEATDKDGYTPLHLACCFGYTDIARLLL 289
                 899****************99*************************8 PP

  == domain 8    score: 15.4 bits;  conditional E-value: 1.3e-05
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt..desGn..taLhiAalrgnieilk 51 
                 g+t+Lh a+ +g +++++lLl+kg++  r+  +++ +  t+ +iA ++g+ +++k
  MMETSP0890-20130614|1823_1 269 GYTPLHLACCFGYTDIARLLLDKGAN--RKvkNNNFWvrTPAQIARWNGYTDLAK 321
                 579**********************8..666899988889999999999998887 PP

>> PF10234.4  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.8   1.5e-05      0.02     154     263 ..     637     750 ..     604     754 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
   PF10234.4 154 lsrplelaeve.kalkeaikelaeelqklkaelenlksdeanLeekiekkkqelertqkrLkalqs.....vrPafleEyeklEeeLkklyeeYlekfrnldyLesqLeaknrkeq 263
                    ++e ++++ +++ke+++ +++ l+++++ l++ ++  +++ ++ +    e++  +++L+++++     v  a l+  e+ E+  ++lye+ ++++++l++L +qLea++ ++ 
  MMETSP0890-20130614|1823_1 637 SHDATETHTLDiETIKERLEGTTQTLNEIEHRLTTQTQHTQAIAQQGTLTAREVNDLRNQLETVTQelgilVEAAVLDLNEDDER--NSLYENLVSQYQSLEALTHQLEATTTTTS 750
                 444555555543589*************************************************975555588888887776665..79********************9988765 PP

>> PF05149.7  Paraflagellar rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.1   2.9e-05      0.04       3     109 ..     629     731 ..     627     777 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-05
   PF05149.7   3 eisavieakkrqkeaceeDlekikekreeeaaadekqrkryeaqkeesekflqkneeqqekvvreieelereLrkLaeerrelvedrieaeeeEekRredyesFlkv 109
                 ++++   a +   e  + D+e ike++e   ++ ++  +r  +q +      q++ +q     re+++l ++L+++++e   lve+ +   +e  +R++ ye+ +  
  MMETSP0890-20130614|1823_1 629 ALQQAFKASHDATETHTLDIETIKERLEGTTQTLNEIEHRLTTQTQ----HTQAIAQQGTLTAREVNDLRNQLETVTQELGILVEAAVLDLNEDDERNSLYENLVSQ 731
                 5677788889999999***********9988776666666666655....5677888899999**************************************997753 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.8   2.4e+03      18      32 ..      46      60 ..      45      60 .. 0.91
   2 ?    0.0   0.0      0.39   5.3e+02      15      32 ..      76      93 ..      75      93 .. 0.88
   3 ?   -3.6   0.0       5.3   7.2e+03      18      24 ..     112     118 ..     111     119 .. 0.87
   4 ?   -0.4   0.0      0.54   7.4e+02      15      31 ..     142     158 ..     141     159 .. 0.87
   5 ?    2.4   0.0     0.074     1e+02      18      32 ..     178     192 ..     174     192 .. 0.89
   6 ?    5.3   0.0     0.009        12      15      32 ..     208     225 ..     207     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.8
   PF12854.2 18 CraGrvdeAvellde 32
                C  G+ d A  lld+
  MMETSP0890-20130614|1823_1 46 CCFGHTDTARLLLDK 60
                999*******99996 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.39
   PF12854.2 15 dGlCraGrvdeAvellde 32
                ++ C +G+ d A  lld+
  MMETSP0890-20130614|1823_1 76 HAACYNGHTDTAKLLLDK 93
                77899*******999996 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.3
   PF12854.2  18 CraGrvd 24 
                 C++G+ d
  MMETSP0890-20130614|1823_1 112 CQNGHTD 118
                 ****987 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.54
   PF12854.2  15 dGlCraGrvdeAvelld 31 
                 ++ C +G+ d A  ll+
  MMETSP0890-20130614|1823_1 142 HSACYNGHTDTARLLLE 158
                 77899*******99987 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.074
   PF12854.2  18 CraGrvdeAvellde 32 
                 C +G+ d A  lld+
  MMETSP0890-20130614|1823_1 178 CCNGHTDTARLLLDK 192
                 ***********9996 PP

  == domain 6    score: 5.3 bits;  conditional E-value: 0.009
   PF12854.2  15 dGlCraGrvdeAvellde 32 
                 ++ C++G+ d A  lld+
  MMETSP0890-20130614|1823_1 208 HAACQNGHTDTATLLLDK 225
                 788**********99996 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.7   6.5e-05     0.089     356     483 ..     595     720 ..     568     737 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.5e-05
   PF13166.1 356 lelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLkay.gfgeleLeieee 483
                  ++++++++i+ + +++  + ++i+  + ++  l++ ++++k++    + + l  di+++++ l+++++++n++e +l+++++ ++++ ++ +  ++e+++ ++  e +++eL  +     l L   +e
  MMETSP0890-20130614|1823_1 595 DDIIDTDAIIDTLLKAL-GAKRSIQPDDPRTISLDALQQAFKASHDATETHTL--DIETIKERLEGTTQTLNEIEHRLTTQTQHTQAIAQQGTLTAREVNDLRNQLETVTQELGILvEAAVLDLNEDDE 720
                 55666666666665444.4678899999999999*******999988777777..6679******************************************************9985555555544443 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.0   0.00044       0.6      10      75 ..     638     704 ..     631     712 .. 0.83
   2 ?   -2.5   0.1       2.7   3.7e+03      24      48 ..     726     750 ..     719     785 .. 0.68
   3 ?    0.4   0.0      0.35   4.8e+02      23      69 ..     930     955 ..     914     960 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00044
                 XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  10 etakeVlk.elegistnventkaklsklngsveetnekvksankavrdarrsvrkleklapqlldkL 75 
                   a+e+   + e i++++e t + l+++++ +   +++ ++  ++  +  r+v +l+++++ + + L
  MMETSP0890-20130614|1823_1 638 HDATETHTlDIETIKERLEGTTQTLNEIEHRLTTQTQHTQAIAQQGTLTAREVNDLRNQLETVTQEL 704
                 44444443267999*****************99999999999999999999*********9998876 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.7
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  24 tnventkaklsklngsveetnekvk 48 
                 +n+    ++l+ l +++e t+   +
  MMETSP0890-20130614|1823_1 726 ENLVSQYQSLEALTHQLEATTTTTS 750
                 5666666777777777777666554 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.35
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  23 stnventkaklsklngsveetnekvksankavrdarrsvrkleklap 69 
                 ++++ +++a l ++n++++e                       k++p
  MMETSP0890-20130614|1823_1 930 NQQLRQWSAVLRTINDKLKE---------------------ALKQLP 955
                 24444455555555554444.....................444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       966  (0.0706554); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.62u 0.42s 00:00:02.04 Elapsed: 00:00:01.19
# Mc/sec: 1939.24
//
Query:       MMETSP0890-20130614|1828_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-98  320.2  21.9    3.9e-24   84.2   0.4    3.9  5  PF13424.1  Tetratricopeptide repeat
    5.1e-69  226.2   8.9      1e-12   47.3   0.0    6.2  6  PF13374.1  Tetratricopeptide repeat
    1.4e-32  111.0  25.5    4.7e-11   42.0   1.6    4.3  5  PF13414.1  TPR repeat
    1.5e-31  105.5   8.0    1.6e-05   24.2   0.0    6.3  6  PF13176.1  Tetratricopeptide repeat
      1e-30  103.8  23.8      4e-08   32.3   0.2    6.2  6  PF00515.23 Tetratricopeptide repeat
    2.6e-26   89.2  26.3    1.2e-05   24.6   0.5    6.2  6  PF07719.12 Tetratricopeptide repeat
    3.3e-22   78.4  30.4    1.8e-06   28.3   2.3    4.4  6  PF13432.1  Tetratricopeptide repeat
      8e-20   69.2   9.5    0.00088   19.1   0.7    6.6  5  PF13431.1  Tetratricopeptide repeat
    1.7e-16   58.7   1.6      0.069   13.5   0.0    5.5  5  PF07721.9  Tetratricopeptide repeat
    4.4e-15   54.7  13.0     0.0024   18.2   0.1    6.2  6  PF13428.1  Tetratricopeptide repeat
    5.3e-15   53.8  21.8     0.0021   17.5   0.2    6.4  6  PF13181.1  Tetratricopeptide repeat
    2.7e-12   46.5   1.7    5.5e-05   23.1   0.4    3.4  4  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    4.2e-09   36.1  11.9       0.27   11.6   0.1    6.2  6  PF13174.1  Tetratricopeptide repeat
    3.3e-08   33.0   3.3      0.023   14.3   0.2    4.1  3  PF07720.7  Tetratricopeptide repeat
      1e-05   24.5   0.6        2.2    7.0   0.0    4.5  5  PF04910.9  Transcriptional repressor TCF25
    3.7e-05   23.9   2.1        2.3    8.5   0.0    4.6  5  PF14357.1  Domain of unknown function (DUF4404)
     0.0005   19.4   1.3      0.082   12.2   0.0    3.3  2  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
    0.00051   19.3   2.8        1.2    8.3   0.0    4.1  4  PF10602.4  26S proteasome subunit RPN7
     0.0013   18.5   6.1        3.4    7.4   0.2    4.6  4  PF11846.3  Domain of unknown function (DUF3366)
     0.0019   17.2   0.3         31    3.4   0.1    4.5  5  PF00244.15 14-3-3 protein
      0.002   17.8   0.5        1.4    8.9   0.0    4.5  6  PF01535.15 PPR repeat
      0.007   15.4   0.1        2.1    7.5   0.0    3.8  5  PF10516.4  SHNi-TPR
  ------ inclusion threshold ------
      0.023   14.4  14.2        5.5    6.8   0.2    5.4  5  PF04212.13 MIT (microtubule interacting and transport) domain
      0.034   14.0   3.9        4.9    7.0   0.3    3.8  3  PF12688.2  Tetratrico peptide repeat
        0.1   12.7   2.2        6.8    6.8   0.2    3.6  3  PF03704.12 Bacterial transcriptional activator domain
       0.83    8.8   3.0        6.8    5.8   0.0    3.5  4  PF12729.2  Four helix bundle sensory module for signal transduction


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.3   3.9e-18   2.1e-15      21      77 ..       1      58 [.       1      59 [. 0.98
   2 !   61.2   0.2   1.1e-19     6e-17      18      77 ..      40     100 ..      40     101 .. 0.96
   3 !   84.2   0.4   7.5e-27   3.9e-24       1      78 []      65     143 ..      65     143 .. 0.99
   4 !   82.0   0.6   3.5e-26   1.9e-23       1      78 []     107     185 ..     107     185 .. 0.97
   5 !   76.8   0.0   1.6e-24   8.3e-22       1      78 []     149     227 ..     149     227 .. 0.98

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 3.9e-18
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                ydeA  lye+a+e+  ++l ++hp++a++lnnla l++ +gdyd A+ ++e++ +i++
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIeKKSLNENHPEVAKTLNNLAHLLHLQGDYDNAKILYERSFRIRQ 58
                9*******************************************************98 PP

  == domain 2    score: 61.2 bits;  conditional E-value: 1.1e-19
   PF13424.1  18 lgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +gdyd A  lye++  + +++lg++hpd+a+a nnla l++ +g+ydeA++y+++Al i e
  MMETSP0890-20130614|1828_1  40 QGDYDNAKILYERSFRIrQEKLGPNHPDVASAFNNLAALLHDQGKYDEAKPYYQRALVIVE 100
                 7*******************************************************97766 PP

  == domain 3    score: 84.2 bits;  conditional E-value: 7.5e-27
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hpd+a++ nnla +l+ +g+ydeA  +y++al +  +++g++hp +a+alnnla  ++ +g++deA+e++ +Al+i+ek
  MMETSP0890-20130614|1828_1  65 HPDVASAFNNLAALLHDQGKYDEAKPYYQRALVIvEQTYGPNHPLVANALNNLAGSLADQGKFDEAKELYGRALRIREK 143
                 9*********************************999****************************************97 PP

  == domain 4    score: 82.0 bits;  conditional E-value: 3.5e-26
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hp +a++lnnla++l  +g++deA ely +al +  + lg  hpd+a++l+nla lyla+g+ +eA++ +e+A+ei +k
  MMETSP0890-20130614|1828_1 107 HPLVANALNNLAGSLADQGKFDEAKELYGRALRIrEKNLGSKHPDVATTLHNLASLYLAQGKGEEAKRRYERAIEIWKK 185
                 899*******************************9999*************************************9775 PP

  == domain 5    score: 76.8 bits;  conditional E-value: 1.6e-24
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hpd+at+l+nla +++++g+ +eA   ye+a+e+  +++g++hp +a+ l+ la+l+  +g++++Al++ ++Al+i+++
  MMETSP0890-20130614|1828_1 149 HPDVATTLHNLASLYLAQGKGEEAKRRYERAIEIwKKVYGPNHPHVATGLLSLARLLSFQGKFKKALPLVQRALDIYKA 227
                 9*********************************99999**************************************86 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.1e-06   0.00057      18      42 .]       1      25 [.       1      25 [. 0.97
   2 !   42.5   0.1   6.6e-14   3.4e-11       1      42 []      26      67 ..      26      67 .. 0.98
   3 !   45.5   0.0   7.1e-15   3.7e-12       1      41 [.      68     108 ..      68     109 .. 0.98
   4 !   39.9   0.1   4.2e-13   2.2e-10       1      42 []     110     151 ..     110     151 .. 0.98
   5 !   47.3   0.0   1.9e-15     1e-12       1      42 []     152     193 ..     152     193 .. 0.98
   6 !   32.3   0.0     1e-10   5.3e-08       1      42 []     194     235 ..     194     235 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.1e-06
   PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
                y+eA +l+e+a +i ++ l ++HP+
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEKKSLNENHPE 25
                89**********************6 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 6.6e-14
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a +lnnLA +l+ +g+y+ A  l+e++  ir++ lG++HPd
  MMETSP0890-20130614|1828_1 26 VAKTLNNLAHLLHLQGDYDNAKILYERSFRIRQEKLGPNHPD 67
                789**************************************8 PP

  == domain 3    score: 45.5 bits;  conditional E-value: 7.1e-15
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +a+a nnLA +l+++g+y+eA +++++al i ++ +G++HP
  MMETSP0890-20130614|1828_1  68 VASAFNNLAALLHDQGKYDEAKPYYQRALVIVEQTYGPNHP 108
                 799*************************************9 PP

  == domain 4    score: 39.9 bits;  conditional E-value: 4.2e-13
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a alnnLA  l+++g+++eA +l+ +al ir++ lG  HPd
  MMETSP0890-20130614|1828_1 110 VANALNNLAGSLADQGKFDEAKELYGRALRIREKNLGSKHPD 151
                 799**************************************8 PP

  == domain 5    score: 47.3 bits;  conditional E-value: 1.9e-15
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a++l+nLA ++ a+g+ eeA + +e+a +i+++++G++HP+
  MMETSP0890-20130614|1828_1 152 VATTLHNLASLYLAQGKGEEAKRRYERAIEIWKKVYGPNHPH 193
                 79***************************************6 PP

  == domain 6    score: 32.3 bits;  conditional E-value: 1e-10
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a+ l  LA++l+ +g++ +Al+l+++al+i+++ l++ HPd
  MMETSP0890-20130614|1828_1 194 VATGLLSLARLLSFQGKFKKALPLVQRALDIYKAKLPPQHPD 235
                 5677889**********************************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.9     6e-09   3.1e-06      19      67 ..       1      56 [.       1      58 [. 0.83
   2 !   41.1   1.4   1.7e-13   8.9e-11       1      66 [.      25      97 ..      25     100 .. 0.89
   3 !   42.0   1.6     9e-14   4.7e-11       3      67 ..     111     182 ..     109     184 .. 0.90
   4 !   31.5   0.1   1.7e-10     9e-08       2      67 ..     152     224 ..     151     226 .. 0.88
   5 !   10.2   0.0   0.00076       0.4       6      39 ..     198     236 ..     193     243 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 6e-09
   PF13414.1 19 ydeAieayekAlel.....dpnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                ydeA  +ye+A+e+     ++n++e    ++nlA+++  +g dy+ A   ye++ ++
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIekkslNENHPEvakTLNNLAHLLHLQG-DYDNAKILYERSFRI 56
                9***********9844444566655666*************.7*********99877 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 1.7e-13
   PF13414.1  1 enAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAle 66
                e+A++l++l+  l  +gdyd+A  +ye++ +++     pn+++   +++nlA+++  +g +y+eA  +y++Al 
  MMETSP0890-20130614|1828_1 25 EVAKTLNNLAHLLHLQGDYDNAKILYERSFRIRqeklgPNHPDvasAFNNLAALLHDQG-KYDEAKPYYQRALV 97
                5799**************************9866666666666666*************.6***********96 PP

  == domain 3    score: 42.0 bits;  conditional E-value: 9e-14
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 A al++l+  l  +g++deA e+y +Al+++        p+ a  + nlA +yl +gk  eeA + ye+A+e+
  MMETSP0890-20130614|1828_1 111 ANALNNLAGSLADQGKFDEAKELYGRALRIReknlgskhPDVATTLHNLASLYLAQGKG-EEAKRRYERAIEI 182
                 89****************************76666666688888*************75.***********97 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 1.7e-10
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                 +A +l +l+  ++ +g+ +eA + ye+A+e++     pn++     ++ lA ++  +g ++++Al   ++Al +
  MMETSP0890-20130614|1828_1 152 VATTLHNLASLYLAQGKGEEAKRRYERAIEIWkkvygPNHPHvatGLLSLARLLSFQG-KFKKALPLVQRALDI 224
                 68899**************************87888866644444*************.6***********987 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 0.00076
   PF13414.1   6 lkelGnalfkegdydeAieayekAleld.....pnnael 39 
                 l  l+  l  +g++++A+ + ++Al++      p+++++
  MMETSP0890-20130614|1828_1 198 LLSLARLLSFQGKFKKALPLVQRALDIYkaklpPQHPDI 236
                 5678888999***************98555555889884 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.025        13      15      31 ..       1      17 [.       1      22 [. 0.81
   2 !   20.1   0.0   6.1e-07   0.00032       1      33 [.      29      61 ..      29      64 .. 0.86
   3 !   24.2   0.0   3.1e-08   1.6e-05       1      34 [.      71     104 ..      71     107 .. 0.88
   4 !   21.1   0.1     3e-07   0.00016       1      32 [.     113     144 ..     113     148 .. 0.89
   5 !   21.3   0.0   2.6e-07   0.00014       1      34 [.     155     188 ..     155     190 .. 0.91
   6 !   12.5   0.0   0.00017     0.088       2      29 ..     198     225 ..     197     234 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
   PF13176.1 15 yekAielyeraLaltkd 31
                y++A  lyera++++k 
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEKK 17
                89********8888865 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 6.1e-07
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpl 33
                +l+nLa+l   +gdy++A  lyer+ +++++ l
  MMETSP0890-20130614|1828_1 29 TLNNLAHLLHLQGDYDNAKILYERSFRIRQEKL 61
                79**********************777766655 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 3.1e-08
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 a +nLa l  ++g+y++A  +y+raL++ +  ++
  MMETSP0890-20130614|1828_1  71 AFNNLAALLHDQGKYDEAKPYYQRALVIVEQTYG 104
                 679*********************9988766655 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 3e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdp 32 
                 al+nLa    ++g++++A ely raL++++  
  MMETSP0890-20130614|1828_1 113 ALNNLAGSLADQGKFDEAKELYGRALRIREKN 144
                 89**********************99888765 PP

  == domain 5    score: 21.3 bits;  conditional E-value: 2.6e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+nLa+ly ++g+ e+A + yera++++k  ++
  MMETSP0890-20130614|1828_1 155 TLHNLASLYLAQGKGEEAKRRYERAIEIWKKVYG 188
                 79**********************9999988776 PP

  == domain 6    score: 12.5 bits;  conditional E-value: 0.00017
   PF13176.1   2 llnLarlysrlgdyekAielyeraLalt 29 
                 ll Larl s +g+++kA+ l +raL + 
  MMETSP0890-20130614|1828_1 198 LLSLARLLSFQGKFKKALPLVQRALDIY 225
                 789********************77655 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.3   0.00087      0.46      17      32 ..       1      16 [.       1      18 [. 0.91
   2 !   21.2   0.1   2.5e-07   0.00013       1      30 [.      27      56 ..      27      59 .. 0.91
   3 !   32.3   0.2   7.7e-11     4e-08       1      29 [.      69      97 ..      69     100 .. 0.94
   4 !   26.9   0.5   3.9e-09   2.1e-06       1      34 []     111     144 ..     111     144 .. 0.96
   5 !   16.0   0.1   1.1e-05    0.0057       2      30 ..     154     182 ..     153     185 .. 0.92
   6 !   11.3   0.0   0.00034      0.18       3      31 ..     197     225 ..     195     226 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00087
                HHHHHHHHHHHHHHHT CS
  PF00515.23 17 ydeAleyyekALelnP 32
                ydeA   ye+A+e++ 
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEK 16
                9************975 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 2.5e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                ak+l+nl+++++ +g+yd A   ye+  ++
  MMETSP0890-20130614|1828_1 27 AKTLNNLAHLLHLQGDYDNAKILYERSFRI 56
                899*********************998766 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 7.7e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALe 29
                a a++nl+++++ +gkydeA  yy++AL 
  MMETSP0890-20130614|1828_1 69 ASAFNNLAALLHDQGKYDEAKPYYQRALV 97
                679************************95 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 3.9e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a+al+nl+  +  +gk+deA e y +AL+++++n
  MMETSP0890-20130614|1828_1 111 ANALNNLAGSLADQGKFDEAKELYGRALRIREKN 144
                 78****************************9887 PP

  == domain 5    score: 16.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                  +l nl+ +yl +gk +eA   ye+A+e+
  MMETSP0890-20130614|1828_1 154 TTLHNLASLYLAQGKGEEAKRRYERAIEI 182
                 5799************************8 PP

  == domain 6    score: 11.3 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALeln 31 
                  l  l+ ++  +gk+++Al   ++AL ++
  MMETSP0890-20130614|1828_1 197 GLLSLARLLSFQGKFKKALPLVQRALDIY 225
                 5778999999****************985 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0025       1.3      17      32 ..       1      16 [.       1      18 [. 0.91
   2 !   18.0   0.1   3.2e-06    0.0017       1      30 [.      27      56 ..      27      59 .. 0.92
   3 !   24.3   0.2   2.9e-08   1.6e-05       1      29 [.      69      97 ..      69     101 .. 0.91
   4 !   24.6   0.5   2.4e-08   1.2e-05       1      34 []     111     144 ..     111     144 .. 0.93
   5 !   18.3   0.3   2.4e-06    0.0013       2      30 ..     154     182 ..     153     182 .. 0.94
   6 !   11.5   0.0   0.00039       0.2       3      31 ..     197     225 ..     195     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0025
                HHHHHHHHHHHHHH-T CS
  PF07719.12 17 yeeAleafekAleldP 32
                y+eA+ ++e+A+e++ 
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEK 16
                9************976 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.2e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+ l+nl+ ++  +gdy+ A+ ++e++ ++
  MMETSP0890-20130614|1828_1 27 AKTLNNLAHLLHLQGDYDNAKILYERSFRI 56
                6889*********************98776 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 2.9e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAle 29
                a a +nl+ ++  +g+y+eA+ ++++Al 
  MMETSP0890-20130614|1828_1 69 ASAFNNLAALLHDQGKYDEAKPYYQRALV 97
                56899**********************96 PP

  == domain 4    score: 24.6 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a al+nl+ +++ +g+++eA+e++ +Al++  +n
  MMETSP0890-20130614|1828_1 111 ANALNNLAGSLADQGKFDEAKELYGRALRIREKN 144
                 689**************************98765 PP

  == domain 5    score: 18.3 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                   l+nl+ +y+++g+ eeA++ +e+A+e+
  MMETSP0890-20130614|1828_1 154 TTLHNLASLYLAQGKGEEAKRRYERAIEI 182
                 679************************96 PP

  == domain 6    score: 11.5 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                 +l  l++++  +g++++Al + ++Al ++
  MMETSP0890-20130614|1828_1 197 GLLSLARLLSFQGKFKKALPLVQRALDIY 225
                 677899********************997 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-05    0.0097      13      56 ..       1      52 [.       1      66 [. 0.87
   2 !   17.2   0.2     1e-05    0.0055      27      58 ..      65      96 ..      54     107 .. 0.87
   3 !   28.3   2.3   3.4e-09   1.8e-06       3      60 ..      75     140 ..      74     151 .. 0.90
   4 !   27.1   0.7   8.2e-09   4.3e-06       3      59 ..     117     181 ..     115     189 .. 0.90
   5 !   25.9   0.4   1.9e-08   9.8e-06       3      60 ..     159     224 ..     157     234 .. 0.90
   6 !   14.4   0.0   7.8e-05     0.041       1      33 [.     199     236 ..     199     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.8e-05
   PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallra 56
                ydeA +++e+a++ +        Pe a  l +la +l+ +g++d A +l+++
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEkkslnenhPEVAKTLNNLAHLLHLQGDYDNAKILYER 52
                89*********************************************66665 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1e-05
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal 58
                +P+ a a+ +la +l+++g++deA  ++++al
  MMETSP0890-20130614|1828_1 65 HPDVASAFNNLAALLHDQGKYDEAKPYYQRAL 96
                3999*************************998 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 3.4e-09
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 lA +l ++G+ydeA +++++al           P+ a+al +la +l+++g++deA +l+ +al++
  MMETSP0890-20130614|1828_1  75 LAALLHDQGKYDEAKPYYQRALVIVeqtygpnhPLVANALNNLAGSLADQGKFDEAKELYGRALRI 140
                 6788889***********88888888*******************************999998865 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 8.2e-09
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59 
                 lA +l ++G++deA +++ +al+          P+ a  l +la ++l++g+ +eA + +++a++
  MMETSP0890-20130614|1828_1 117 LAGSLADQGKFDEAKELYGRALRIReknlgskhPDVATTLHNLASLYLAQGKGEEAKRRYERAIE 181
                 8999**************66666666*******************************99999875 PP

  == domain 5    score: 25.9 bits;  conditional E-value: 1.9e-08
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 lA ++l++G+ +eA + +e+a++ +        P+ a  ll la++l  +g++++A+ l ++al++
  MMETSP0890-20130614|1828_1 159 LASLYLAQGKGEEAKRRYERAIEIWkkvygpnhPHVATGLLSLARLLSFQGKFKKALPLVQRALDI 224
                 8999**************************99999***************************9954 PP

  == domain 6    score: 14.4 bits;  conditional E-value: 7.8e-05
   PF13432.1   1 lalArallraGdydeAlaaleaalala.....Peaaea 33 
                 l+lAr+l  +G++++Al++ ++al+ +     P+++++
  MMETSP0890-20130614|1828_1 199 LSLARLLSFQGKFKKALPLVQRALDIYkaklpPQHPDI 236
                 689************************99999777765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.7   1.7e-06   0.00088       1      33 [.       7      47 ..       7      48 .. 0.84
   2 !   17.2   0.1   6.7e-06    0.0035       9      33 ..      65      89 ..      60      90 .. 0.92
   3 !   10.2   0.1    0.0012      0.66      12      34 .]     107     132 ..      91     132 .. 0.81
   4 !   13.2   0.0   0.00013     0.069       8      33 ..     148     173 ..     133     174 .. 0.90
   5 !    8.8   0.0    0.0035       1.8       2      33 ..     176     215 ..     175     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.7e-06
   PF13431.1  1 lyekaleldPnn........adaynnLAelllnnGdleeAe 33
                lye+a+e+++++        a  +nnLA ll+ +Gd++ A+
  MMETSP0890-20130614|1828_1  7 LYERAIEIEKKSlnenhpevAKTLNNLAHLLHLQGDYDNAK 47
                68888888766666666777******************996 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 6.7e-06
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a a+nnLA ll+++G+++eA+
  MMETSP0890-20130614|1828_1 65 HPDVASAFNNLAALLHDQGKYDEAK 89
                7888*******************97 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.0012
   PF13431.1  12 n...adaynnLAelllnnGdleeAeq 34 
                 +   a+a+nnLA  l+++G+++eA++
  MMETSP0890-20130614|1828_1 107 HplvANALNNLAGSLADQGKFDEAKE 132
                 44449*******************85 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 0.00013
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                 ++P+ a  ++nLA l+l++G+ eeA+
  MMETSP0890-20130614|1828_1 148 KHPDVATTLHNLASLYLAQGKGEEAK 173
                 57899****************99997 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.0035
   PF13431.1   2 yekaleld.....Pnn...adaynnLAelllnnGdleeAe 33 
                 ye+a+e+      Pn+   a  +  LA+ll+ +G++++A+
  MMETSP0890-20130614|1828_1 176 YERAIEIWkkvygPNHphvATGLLSLARLLSFQGKFKKAL 215
                 888888876666677755577777*************996 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0018      0.95       4      18 ..      30      44 ..      27      51 .. 0.88
   2 !   11.1   0.0   0.00078      0.41       5      20 ..      73      88 ..      69      90 .. 0.88
   3 !   10.5   0.0    0.0011       0.6       3      24 ..     113     134 ..     111     136 .. 0.87
   4 !   13.5   0.0   0.00013     0.069       3      26 .]     155     178 ..     153     178 .. 0.92
   5 !    8.3   0.0    0.0059       3.1       3      26 .]     197     220 ..     195     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0018
                H---HHHHHH----- CS
   PF07721.9  4 llaLArallalGdld 18
                l +LA +l+++Gd+d
  MMETSP0890-20130614|1828_1 30 LNNLAHLLHLQGDYD 44
                569**********99 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00078
                ---HHHHHH------- CS
   PF07721.9  5 laLArallalGdldeA 20
                 +LA +l+++G +deA
  MMETSP0890-20130614|1828_1 73 NNLAALLHDQGKYDEA 88
                69*************9 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.0011
                 HH---HHHHHH-------HHHH CS
   PF07721.9   3 allaLArallalGdldeArall 24 
                 al +LA  l+++G +deA +l 
  MMETSP0890-20130614|1828_1 113 ALNNLAGSLADQGKFDEAKELY 134
                 7889**************9886 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 0.00013
                 HH---HHHHHH-------HHHHHT CS
   PF07721.9   3 allaLArallalGdldeAraller 26 
                 +l++LA ++la+G  +eA +  er
  MMETSP0890-20130614|1828_1 155 TLHNLASLYLAQGKGEEAKRRYER 178
                 799*****************9987 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0059
                 HH---HHHHHH-------HHHHHT CS
   PF07721.9   3 allaLArallalGdldeAraller 26 
                  ll LAr+l  +G +  A+ l++r
  MMETSP0890-20130614|1828_1 197 GLLSLARLLSFQGKFKKALPLVQR 220
                 5789**************999876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.52   2.8e+02      17      33 ..       1      17 [.       1      30 [. 0.77
   2 ?    7.7   0.0     0.011       5.6       3      36 ..      29      67 ..      27      71 .. 0.74
   3 !   12.4   0.1   0.00034      0.18       3      29 ..      71      97 ..      69     110 .. 0.87
   4 !   18.2   0.1   4.5e-06    0.0024       2      43 ..     112     161 ..     111     162 .. 0.87
   5 !   11.2   0.1   0.00082      0.43       3      30 ..     155     182 ..     152     199 .. 0.85
   6 !   10.5   0.0    0.0014      0.72       4      30 ..     198     232 ..     194     245 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.52
   PF13428.1 17 pdeAiallrralalaPd 33
                +deA  l++ra++   +
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEKK 17
                69*********985544 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.011
   PF13428.1  3 allalarallalGdpdeAiallrrala.....laPddae 36
                +l  la++l  +Gd+d A  l++r  +     l+P++++
  MMETSP0890-20130614|1828_1 29 TLNNLAHLLHLQGDYDNAKILYERSFRirqekLGPNHPD 67
                67789******************9754333335666665 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00034
   PF13428.1  3 allalarallalGdpdeAiallrrala 29
                a   la++l ++G +deA  +++ral 
  MMETSP0890-20130614|1828_1 71 AFNNLAALLHDQGKYDEAKPYYQRALV 97
                66789********************84 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 4.5e-06
   PF13428.1   2 eallalarallalGdpdeAiallrrala........laPddaealllLar 43 
                 +al  la  l+++G +deA +l+ ral+        ++Pd a+ l++La 
  MMETSP0890-20130614|1828_1 112 NALNNLAGSLADQGKFDEAKELYGRALRireknlgsKHPDVATTLHNLAS 161
                 78999**********************97778877788888888888886 PP

  == domain 5    score: 11.2 bits;  conditional E-value: 0.00082
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 +l  la ++la+G  +eA + ++ra++ 
  MMETSP0890-20130614|1828_1 155 TLHNLASLYLAQGKGEEAKRRYERAIEI 182
                 5678*********************985 PP

  == domain 6    score: 10.5 bits;  conditional E-value: 0.0014
   PF13428.1   4 llalarallalGdpdeAiallrrala........l 30 
                 ll lar+l  +G +++A+ l +ral         +
  MMETSP0890-20130614|1828_1 198 LLSLARLLSFQGKFKKALPLVQRALDiykaklppQ 232
                 789*********************98444443333 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.031        16      17      32 ..       1      16 [.       1      18 [. 0.92
   2 !   14.6   0.1   3.5e-05     0.018       1      30 [.      27      56 ..      27      60 .. 0.89
   3 !   17.5   0.2   4.1e-06    0.0021       3      28 ..      71      96 ..      69      96 .. 0.92
   4 !   14.3   0.2   4.5e-05     0.024       1      32 [.     111     142 ..     111     144 .. 0.91
   5 !    8.5   0.1     0.003       1.6       3      30 ..     155     182 ..     153     186 .. 0.91
   6 ?    5.3   0.0     0.033        17       4      31 ..     198     225 ..     195     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.031
                HHHHHHHHH---HHHH CS
   PF13181.1 17 ydkAkeylekalelkp 32
                yd+Ak  +e+a+e+ +
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEK 16
                9************986 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3.5e-05
                ---TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  1 akayynlGdiYrqlGdydkAkeylekalel 30
                ak+++nl++++   Gdyd+Ak  +e+   +
  MMETSP0890-20130614|1828_1 27 AKTLNNLAHLLHLQGDYDNAKILYERSFRI 56
                5789******************99987766 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 4.1e-06
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                a +nl+ ++ + G+yd+Ak y+++al
  MMETSP0890-20130614|1828_1 71 AFNNLAALLHDQGKYDEAKPYYQRAL 96
                6789********************97 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 4.5e-05
                 ---TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkp 32 
                 a+a++nl+  +++ G++d+Ake + +al +  
  MMETSP0890-20130614|1828_1 111 ANALNNLAGSLADQGKFDEAKELYGRALRIRE 142
                 5899************************9976 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.003
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                 +++nl+++Y+  G+ ++Ak  +e+a+e+
  MMETSP0890-20130614|1828_1 155 TLHNLASLYLAQGKGEEAKRRYERAIEI 182
                 6899***************999999997 PP

  == domain 6    score: 5.3 bits;  conditional E-value: 0.033
                 TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelk 31 
                 ++ l++++   G+++kA+   ++al++ 
  MMETSP0890-20130614|1828_1 198 LLSLARLLSFQGKFKKALPLVQRALDIY 225
                 6789**************9999999986 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.4     1e-07   5.5e-05       5      83 ..       1      94 [.       1      95 [. 0.78
   2 !   15.3   0.1   2.8e-05     0.015       5      83 ..      92     178 ..      89     179 .. 0.80
   3 !    9.0   0.0    0.0026       1.4      27      81 ..     155     218 ..     147     221 .. 0.56
   4 !    8.9   0.0    0.0027       1.4       3      51 ..     174     227 ..     172     238 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1e-07
                HHHHHHHHHHHCCC-ST....-HHHH.....CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  5 yknAlflaekllaespk....dpeda.....ylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83
                y++A  l+e++++ ++k    +          l +lA  l l+g+y+ A  l+++      ++l +++++ +     lA  l+++gkydeA   +++
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIEIEKKslneN---HpevakTLNNLAHLLHLQGDYDNAKILYERsfrirqEKLGPNHPDVASafnNLAALLHDQGKYDEAKPYYQR 94
                8899999999999999877541...12333466668*************8888779****999999**777773344469999********887766 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2   5 yknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83 
                 y+ Al + e+ +  ++  p  + +l +lA +l  +g++++A el+ +      ++l s++++ +     lA  +l++gk +eA + +e+
  MMETSP0890-20130614|1828_1  92 YQRALVIVEQTYGPNH--PlVANALNNLAGSLADQGKFDEAKELYGRalrireKNLGSKHPDVATtlhNLASLYLAQGKGEEAKRRYER 178
                 8889999999888876..5555556667********************99999999999977777433457889999999999887776 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0026
                 CHHHHHHHHHH---H.......HHHHHHHHC.TSHCHCB..HHHHHHH.HHHHHHTT-HHHHCCCH CS
   PF12895.2  27 ylyalAlclylngey.......krAyellrk.leldsss..lgcryll.ArcllklgkydeAiavL 81 
                  l++lA  ++ +g+        +rA+e+ +k     +++  +++ +l  Ar l  +gk+++A+ + 
  MMETSP0890-20130614|1828_1 155 TLHNLASLYLAQGKGeeakrryERAIEIWKKvY--GPNHphVATGLLSlARLLSFQGKFKKALPLV 218
                 567777777777765222222255555553332..3344224444454588888888888888665 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0027
                 T-HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC......T CS
   PF12895.2   3 hnyknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk......l 51 
                 ++y+ A+ +  k++  ++  p  ++ l+ lA  l  +g++k+A+ l+++       
  MMETSP0890-20130614|1828_1 174 RRYERAIEIWKKVYGPNH--PhVATGLLSLARLLSFQGKFKKALPLVQRaldiykA 227
                 678888888888888876..557778888899999999999998888777544444 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.3   7.1e+02      16      28 ..       1      13 [.       1      18 [. 0.88
   2 ?    6.0   0.0     0.032        17       5      25 ..      32      52 ..      32      52 .. 0.86
   3 !    9.6   0.1    0.0022       1.2       7      27 ..      76      96 ..      74      97 .. 0.76
   4 ?    7.1   0.1     0.015       7.7       6      28 ..     117     139 ..     113     141 .. 0.83
   5 !   11.6   0.1    0.0005      0.27       3      28 ..     156     181 ..     155     183 .. 0.92
   6 ?    3.4   0.0      0.21   1.1e+02       3      30 ..     198     225 ..     196     226 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHH CS
   PF13174.1 16 tdeAlealerlik 28
                +deA+ ++er i+
  MMETSP0890-20130614|1828_1  1 YDEAKPLYERAIE 13
                699*******997 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.032
                HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealer 25
                +la ++  +gd+d+A+ ++er
  MMETSP0890-20130614|1828_1 32 NLAHLLHLQGDYDNAKILYER 52
                5787888899*******9997 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.0022
                HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlealerli 27
                a ++  +g++deA+ +++r +
  MMETSP0890-20130614|1828_1 76 AALLHDQGKYDEAKPYYQRAL 96
                54555566**********976 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                 la s+  +g++deA+e++ r ++
  MMETSP0890-20130614|1828_1 117 LAGSLADQGKFDEAKELYGRALR 139
                 666777788*********99875 PP

  == domain 5    score: 11.6 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlik 28 
                 l +la +y+++g+ +eA++ +er i+
  MMETSP0890-20130614|1828_1 156 LHNLASLYLAQGKGEEAKRRYERAIE 181
                 679********************997 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerlikey 30 
                 l+ la+++  +g++ +Al + +r ++ y
  MMETSP0890-20130614|1828_1 198 LLSLARLLSFQGKFKKALPLVQRALDIY 225
                 8899*9999999******9999998877 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0036       1.9       7      32 ..      33      56 ..      30      60 .. 0.81
   2 !   14.3   0.2   4.4e-05     0.023       7      25 ..      75      93 ..      74      98 .. 0.90
   3 !    8.3   0.0    0.0035       1.8       7      36 .]     117     144 ..     114     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0036
                HHHHHHHTT-HHHHHHH..HHHHHHH CS
   PF07720.7  7 lAaefynkkkyqeArelfsYallail 32
                lA  ++++++y+ A  l  Y+ ++ +
  MMETSP0890-20130614|1828_1 33 LAHLLHLQGDYDNAKIL--YERSFRI 56
                67889************..7766655 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.4e-05
                HHHHHHHTT-HHHHHHH.. CS
   PF07720.7  7 lAaefynkkkyqeArelfs 25
                lAa +++++ky+eA  +++
  MMETSP0890-20130614|1828_1 75 LAALLHDQGKYDEAKPYYQ 93
                8*************99987 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0035
                 HHHHHHHTT-HHHHHHH..HHHHHHH-TT- CS
   PF07720.7   7 lAaefynkkkyqeArelfsYallaildken 36 
                 lA ++ +++k++eA el  Y+ +  ++++n
  MMETSP0890-20130614|1828_1 117 LAGSLADQGKFDEAKEL--YGRALRIREKN 144
                 5668899**********..88777777666 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.027        14      39      74 ..      26      61 ..      17      74 .. 0.80
   2 ?    5.2   0.0     0.015       7.9      44      78 ..      73     107 ..      63     117 .. 0.85
   3 ?    2.0   0.0      0.14        74      36      71 ..     107     142 ..     105     149 .. 0.86
   4 ?    1.8   0.0      0.16        85      35      71 ..     148     184 ..     143     192 .. 0.82
   5 !    7.0   0.0    0.0042       2.2      36      74 ..     191     229 ..     189     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.027
   PF04910.9 39 HvdtLlqlsevyreqgdfevAndlieraLfilervf 74
                   tL +l+++++ qgd+ +A  l er+  i ++ +
  MMETSP0890-20130614|1828_1 26 VAKTLNNLAHLLHLQGDYDNAKILYERSFRIRQEKL 61
                5689********************999876666555 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.015
   PF04910.9  44 lqlsevyreqgdfevAndlieraLfilervfhpsF 78 
                  +l+ +++ qg++ +A  + +raL i+e+   p+ 
  MMETSP0890-20130614|1828_1  73 NNLAALLHDQGKYDEAKPYYQRALVIVEQTYGPNH 107
                 579999**********************9988875 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.14
   PF04910.9  36 yPYHvdtLlqlsevyreqgdfevAndlieraLfile 71 
                 +P   ++L +l+  +  qg+f +A +l  raL i e
  MMETSP0890-20130614|1828_1 107 HPLVANALNNLAGSLADQGKFDEAKELYGRALRIRE 142
                 677789999**********************97765 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.16
   PF04910.9  35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfile 71 
                 k+P    tL +l+ +y  qg+ e+A    era+ i  
  MMETSP0890-20130614|1828_1 148 KHPDVATTLHNLASLYLAQGKGEEAKRRYERAIEIWK 184
                 66667789***********************986655 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0042
   PF04910.9  36 yPYHvdtLlqlsevyreqgdfevAndlieraLfilervf 74 
                 +P    +Ll l+ ++  qg+f++A  l++raL i+   +
  MMETSP0890-20130614|1828_1 191 HPHVATGLLSLARLLSFQGKFKKALPLVQRALDIYKAKL 229
                 7777889*************************8776555 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0044       2.3      61      81 ..      18      38 ..       2      41 .. 0.81
   2 ?    2.7   0.0      0.28   1.5e+02      64      82 ..      63      81 ..      51      83 .. 0.84
   3 ?    6.0   0.0     0.028        15      36      82 ..      77     123 ..      68     125 .. 0.67
   4 ?    3.6   0.0      0.15        80      62      78 ..     145     161 ..     129     166 .. 0.84
   5 ?   -1.7   0.0         7   3.7e+03      65      80 ..     190     205 ..     185     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0044
   PF14357.1 61 rFeaeHPklagtlrnildsLa 81
                   ++HP++a+tl+n++  L+
  MMETSP0890-20130614|1828_1 18 SLNENHPEVAKTLNNLAHLLH 38
                5789************99986 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.28
   PF14357.1 64 aeHPklagtlrnildsLan 82
                 +HP++a++ +n++  L+ 
  MMETSP0890-20130614|1828_1 63 PNHPDVASAFNNLAALLHD 81
                58***********999975 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.028
   PF14357.1  36 ealeeedaseaedeslaerlneav.erFeaeHPklagtlrnildsLan 82 
                 ++l++ + + +e ++  +r   +v +    +HP +a++l+n++ sLa 
  MMETSP0890-20130614|1828_1  77 ALLHD-QGKYDEAKPYYQRALVIVeQTYGPNHPLVANALNNLAGSLAD 123
                 55555.4555555555555555440456779***************96 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.15
   PF14357.1  62 FeaeHPklagtlrnild 78 
                    +HP++a tl n++ 
  MMETSP0890-20130614|1828_1 145 LGSKHPDVATTLHNLAS 161
                 5679*********9975 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 7
   PF14357.1  65 eHPklagtlrnildsL 80 
                 +HP++a  l +++  L
  MMETSP0890-20130614|1828_1 190 NHPHVATGLLSLARLL 205
                 6****98887777766 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.37   1.9e+02     117     152 ..      68     103 ..      57     107 .. 0.82
   2 !   12.2   0.0   0.00016     0.082      91     153 ..     125     188 ..     110     241 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.37
   PF09986.4 117 kAklalrlAWlyrdledeekeklflkkAlelykeay 152
                  A    +lA l  d+++  + k ++++Al + +++y
  MMETSP0890-20130614|1828_1  68 VASAFNNLAALLHDQGKYDEAKPYYQRALVIVEQTY 103
                 56666778999999999999999*****99999888 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00016
   PF09986.4  91 rtldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeaye 153
                  ++dea e Y  al    ++  +k+   A ++++lA ly  +++ e+ k+ +++A+e++k++y 
  MMETSP0890-20130614|1828_1 125 GKFDEAKELYGRALRIrEKNLGSKHPDVATTLHNLASLYLAQGKGEEAKRRYERAIEIWKKVYG 188
                 5789999*******994556667777***********************************996 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.034        18      22      62 ..      13      53 ..       7      65 .. 0.84
   2 ?    1.9   0.0      0.22   1.1e+02      34      63 ..      67      96 ..      63     107 .. 0.87
   3 ?    2.0   0.0       0.2     1e+02      36      65 ..     111     143 ..     109     150 .. 0.74
   4 !    8.3   0.0    0.0023       1.2      34      64 ..     151     181 ..     140     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.034
   PF10602.4 22 elkdakenlikesirraledlaehYlkigdleeAlkaysra 62
                e+++   n+   +++++l++la+  +  gd+++A  +y+r 
  MMETSP0890-20130614|1828_1 13 EIEKKSLNENHPEVAKTLNNLAHLLHLQGDYDNAKILYERS 53
                5556667788889*************************993 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.22
   PF10602.4 34 sirraledlaehYlkigdleeAlkaysrar 63
                +++ a ++la   ++ g+++eA  +y+ra+
  MMETSP0890-20130614|1828_1 67 DVASAFNNLAALLHDQGKYDEAKPYYQRAL 96
                577888999******************975 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.2
   PF10602.4  36 rraledlaehYlkigdleeAlkaysr...ardy 65 
                 ++al++la   ++ g+++eA ++y r   +r++
  MMETSP0890-20130614|1828_1 111 ANALNNLAGSLADQGKFDEAKELYGRalrIREK 143
                 678899999999************985223444 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0023
   PF10602.4  34 sirraledlaehYlkigdleeAlkaysrard 64 
                 +++ +l++la  Yl  g+ eeA + y+ra +
  MMETSP0890-20130614|1828_1 151 DVATTLHNLASLYLAQGKGEEAKRRYERAIE 181
                 6889999*********************986 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.025        13     141     170 ..      23      53 ..       3      65 .. 0.77
   2 ?    3.2   0.1      0.12        64     147     173 ..      72      98 ..      58     113 .. 0.85
   3 ?    1.6   0.0      0.37     2e+02     146     171 ..     113     138 ..     107     144 .. 0.87
   4 !    7.4   0.2    0.0064       3.4     144     174 ..     153     183 ..     141     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.025
   PF11846.3 141 kP.rpavirrlalalallGkeeeArdamaea 170
                  P  + ++++la +l l+G+ + A+ + +++
  MMETSP0890-20130614|1828_1  23 HPeVAKTLNNLAHLLHLQGDYDNAKILYERS 53 
                 45335699****************9887765 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.12
   PF11846.3 147 irrlalalallGkeeeArdamaeaaal 173
                  ++la +l  +Gk +eA+ + ++a  +
  MMETSP0890-20130614|1828_1  72 FNNLAALLHDQGKYDEAKPYYQRALVI 98 
                 689****************99999766 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.37
   PF11846.3 146 virrlalalallGkeeeArdamaeaa 171
                  +++la +la +Gk +eA+ +  +a 
  MMETSP0890-20130614|1828_1 113 ALNNLAGSLADQGKFDEAKELYGRAL 138
                 5799***************9998876 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0064
   PF11846.3 144 pavirrlalalallGkeeeArdamaeaaaly 174
                 ++++++la+++  +Gk eeA++  ++a  + 
  MMETSP0890-20130614|1828_1 153 ATTLHNLASLYLAQGKGEEAKRRYERAIEIW 183
                 57899***************88777776554 PP

>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.059        31     143     166 ..       2      25 ..       1      82 [. 0.78
   2 ?    2.5   0.0      0.11        59     142     166 ..      85     109 ..      75     119 .. 0.85
   3 ?    2.4   0.0      0.12        63     141     167 ..     126     152 ..     115     166 .. 0.82
   4 ?    3.0   0.0     0.077        41     143     199 ..     170     225 ..     165     235 .. 0.75
   5 ?    0.4   0.0      0.48   2.5e+02     143     170 ..     212     241 ..     206     245 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHHHHHHHS-TT-TT CS
  PF00244.15 143 ekaleaYkeAleiaeselkpthpi 166
                 ++a+  Y++A+ei +++l+  hp 
  MMETSP0890-20130614|1828_1   2 DEAKPLYERAIEIEKKSLNENHPE 25 
                 678899**********99999985 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHS-TT-TT CS
  PF00244.15 142 aekaleaYkeAleiaeselkpthpi 166
                  ++a+ +Y++Al i+e+++ p hp+
  MMETSP0890-20130614|1828_1  85 YDEAKPYYQRALVIVEQTYGPNHPL 109
                 68999***************99997 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHS-TT-TTT CS
  PF00244.15 141 aaekaleaYkeAleiaeselkpthpir 167
                   ++a+e Y +Al i e++l + hp  
  MMETSP0890-20130614|1828_1 126 KFDEAKELYGRALRIREKNLGSKHPDV 152
                 5689******************99965 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.077
                 HHHHHHHHHHHHHHHHHS-TT-TTT---HHHHHHHHHHTSS-HHHHHHHHHHHHHHH CS
  PF00244.15 143 ekaleaYkeAleiaeselkpthpirLglaLnfsVFyYEilnspekAcelakqafdea 199
                 e+a++ Y++A+ei ++ + p hp   +  L  + ++  +  + +kA  l+++a+d  
  MMETSP0890-20130614|1828_1 170 EEAKRRYERAIEIWKKVYGPNHPHVATGLLSLARLL-SFQGKFKKALPLVQRALDIY 225
                 688999999999999999999998777777777665.66777777777777777755 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHHHHHS-TT-T..TT--- CS
  PF00244.15 143 ekaleaYkeAleiaeselkpthp..irLgl 170
                 +kal   ++Al+i +++l+p+hp  ir  +
  MMETSP0890-20130614|1828_1 212 KKALPLVQRALDIYKAKLPPQHPdiIRAQM 241
                 678888899***********9984455555 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         3   1.6e+03       3      25 ..      30      52 ..      29      53 .. 0.78
   2 ?   -0.2   0.0       2.2   1.1e+03       2      19 ..      71      88 ..      70      89 .. 0.82
   3 !    8.9   0.0    0.0026       1.4       4      25 ..     115     136 ..     113     140 .. 0.88
   4 ?    1.4   0.0      0.65   3.4e+02       5      21 ..     158     174 ..     154     181 .. 0.79
   5 ?   -0.1   0.0       1.9     1e+03      14      25 ..     174     185 ..     172     186 .. 0.86
   6 ?   -2.2   0.0       9.2   4.9e+03       8      20 ..     203     215 ..     200     215 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 3
  PF01535.15  3 ynslIsgyckaGkleeAlelfke 25
                 n l + +   G+++ A  l+++
  MMETSP0890-20130614|1828_1 30 LNNLAHLLHLQGDYDNAKILYER 52
                567777777789*****999875 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 2.2
  PF01535.15  2 tynslIsgyckaGkleeA 19
                ++n l   +   Gk++eA
  MMETSP0890-20130614|1828_1 71 AFNNLAALLHDQGKYDEA 88
                578888888889*****9 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0026
  PF01535.15   4 nslIsgyckaGkleeAlelfke 25 
                 n l  +++  Gk++eA el+ +
  MMETSP0890-20130614|1828_1 115 NNLAGSLADQGKFDEAKELYGR 136
                 889999*************976 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.65
  PF01535.15   5 slIsgyckaGkleeAle 21 
                  l s y   Gk eeA +
  MMETSP0890-20130614|1828_1 158 NLASLYLAQGKGEEAKR 174
                 67789999*******87 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 1.9
  PF01535.15  14 GkleeAlelfke 25 
                 +++e A+e++k+
  MMETSP0890-20130614|1828_1 174 RRYERAIEIWKK 185
                 689******997 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 9.2
  PF01535.15   8 sgyckaGkleeAl 20 
                 + ++  Gk+++Al
  MMETSP0890-20130614|1828_1 203 RLLSFQGKFKKAL 215
                 56777899*9996 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.1   2.7e+03      24      36 ..       8      20 ..       1      21 [. 0.68
   2 ?    2.4   0.0      0.16        82      15      37 ..      83     105 ..      81     106 .. 0.88
   3 !    7.5   0.0    0.0041       2.1      15      36 ..     125     146 ..     123     148 .. 0.90
   4 ?   -3.3   0.0       9.2   4.8e+03      24      36 ..     176     188 ..     176     189 .. 0.78
   5 ?   -0.2   0.0      0.99   5.2e+02      15      37 ..     209     231 ..     208     232 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 5.1
   PF10516.4 24 lrkaLeLreqllp 36
                +++a+e+  + l+
  MMETSP0890-20130614|1828_1  8 YERAIEIEKKSLN 20
                8899998766665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.16
   PF10516.4  15 EnFpqAveDlrkaLeLreqllpp 37 
                 +++++A   +++aL + eq++ p
  MMETSP0890-20130614|1828_1  83 GKYDEAKPYYQRALVIVEQTYGP 105
                 799999999*****999999876 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0041
   PF10516.4  15 EnFpqAveDlrkaLeLreqllp 36 
                 ++F++A e + +aL +re++l 
  MMETSP0890-20130614|1828_1 125 GKFDEAKELYGRALRIREKNLG 146
                 79*****************986 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 9.2
   PF10516.4  24 lrkaLeLreqllp 36 
                 +++a+e+  +++ 
  MMETSP0890-20130614|1828_1 176 YERAIEIWKKVYG 188
                 7999999777775 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.99
   PF10516.4  15 EnFpqAveDlrkaLeLreqllpp 37 
                 ++F+ A+   ++aL+++   lpp
  MMETSP0890-20130614|1828_1 209 GKFKKALPLVQRALDIYKAKLPP 231
                 57888888889****99766665 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.09        47       3      19 ..       2      18 ..       1      56 [. 0.58
   2 ?    6.8   0.2      0.01       5.5      17      34 ..      81      98 ..      69     103 .. 0.82
   3 ?    3.7   0.1     0.098        51      17      34 ..     123     140 ..     111     145 .. 0.86
   4 ?    4.9   0.1     0.041        21      11      36 ..     166     184 ..     156     187 .. 0.60
   5 ?    0.9   0.0      0.71   3.7e+02       3      15 ..     212     224 ..     210     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.09
                HHHHHHHHHHHHHHHTT CS
  PF04212.13  3 skAlelikkAveaDeag 19
                ++A++l  +A+e++++ 
  MMETSP0890-20130614|1828_1  2 DEAKPLYERAIEIEKKS 18
                45555555666665544 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.01
                HTT-HHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlel 34
                ++gky+eA  +Y+ Al +
  MMETSP0890-20130614|1828_1 81 DQGKYDEAKPYYQRALVI 98
                68*************966 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.098
                 HTT-HHHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAlel 34 
                 ++gk++eA elY  Al +
  MMETSP0890-20130614|1828_1 123 DQGKFDEAKELYGRALRI 140
                 589*********999875 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.041
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
  PF04212.13  11 kAveaDeagkyeeAlelYkeAlelLl 36 
                 +       gk eeA + Y+ A+e++ 
  MMETSP0890-20130614|1828_1 166 Q-------GKGEEAKRRYERAIEIWK 184
                 4.......555666666666666654 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.71
                 HHHHHHHHHHHHH CS
  PF04212.13   3 skAlelikkAvea 15 
                 +kAl+l+++A+++
  MMETSP0890-20130614|1828_1 212 KKALPLVQRALDI 224
                 79999***99986 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2     0.013       6.6      18      94 ..       2      88 ..       1     103 [. 0.63
   2 ?    7.0   0.3    0.0094       4.9      11      66 ..      79     139 ..      69     153 .. 0.76
   3 ?    1.0   0.0      0.68   3.6e+02      10      29 ..     162     181 ..     153     223 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.013
   PF12688.2 18 akAvplYrrAla...aGLagarrr..ratiqlaSsLRnlGrveeslalleaela...eapgdelddalaaflAL..aLssagrerea 94
                ++A plY+rA++   + L++ +    ++   la  L   G  +++ +l e+  +   e+ g +  d  +af  L   L+++g+ +ea
  MMETSP0890-20130614|1828_1  2 DEAKPLYERAIEiekKSLNENHPEvaKTLNNLAHLLHLQGDYDNAKILYERSFRirqEKLGPNHPDVASAFNNLaaLLHDQGKYDEA 88
                689999999975333677766543114455788888888999999999888765111223334455556664441158999988887 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0094
   PF12688.2  11 rDstGeeakAvplYrrAl.....aaGLagarrrratiqlaSsLRnlGrveeslalleaela 66 
                     G+ ++A p Y+rAl       G +      a   la sL   G+ +e+  l  ++l+
  MMETSP0890-20130614|1828_1  79 LHDQGKYDEAKPYYQRALviveqTYGPNHPLVANALNNLAGSLADQGKFDEAKELYGRALR 139
                 5567999999999999984443345888888888999999999999999999988877766 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.68
   PF12688.2  10 arDstGeeakAvplYrrAla 29 
                  +   G+ ++A   Y+rA++
  MMETSP0890-20130614|1828_1 162 LYLAQGKGEEAKRRYERAIE 181
                 55566777777777777765 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2     0.013       6.8      91     138 ..     106     154 ..       8     160 .. 0.84
   2 ?    1.5   0.1      0.56   2.9e+02      16      37 ..     163     184 ..     151     190 .. 0.79
   3 ?    2.1   0.0      0.36   1.9e+02      13      52 ..     202     241 ..     192     258 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.013
  PF03704.12  91 lhPlrErlhrqlmrAlyrsGrqaeALevYrrlrrrLaeeLGv.ePgpel 138
                  hPl  ++   l  +l++ G+  eA e Y r+ r  +++LG   P  ++
  MMETSP0890-20130614|1828_1 106 NHPLVANALNNLAGSLADQGKFDEAKELYGRALRIREKNLGSkHPDVAT 154
                 69999999999******************************96665555 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.56
  PF03704.12  16 alaagdpeeaarlleaalalwr 37 
                  la+g+ eea r++e+a+++w+
  MMETSP0890-20130614|1828_1 163 YLAQGKGEEAKRRYERAIEIWK 184
                 5788889999999999999996 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.36
  PF03704.12  13 grralaagdpeeaarlleaalalwrGpaladvragpwlea 52 
                 +r ++ +g++++a+ l+++al++++ ++  + ++  ++++
  MMETSP0890-20130614|1828_1 202 ARLLSFQGKFKKALPLVQRALDIYKAKLPPQHPDIIRAQM 241
                 5666778999**************9998777666544444 PP

>> PF12729.2  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.1     6e+02     140     172 ..       4      36 ..       1      58 [. 0.58
   2 ?    0.1   0.0      0.77     4e+02     131     147 ..      79      95 ..      73     103 .. 0.83
   3 ?    5.8   0.0     0.013       6.8     130     151 ..     120     140 ..     112     180 .. 0.77
   4 ?   -0.6   0.0       1.3   6.6e+02     138     167 ..     219     248 ..     211     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.1
   PF12729.2 140 AyelyetelkparekviealdelvdlnlkvAee 172
                 A+ lye  ++   ++++e+  e++++ +++A  
  MMETSP0890-20130614|1828_1   4 AKPLYERAIEIEKKSLNENHPEVAKTLNNLAHL 36 
                 555555555555555555555555444444443 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.77
   PF12729.2 131 lakegkkdeAyelyete 147
                 l ++gk+deA+ +y+  
  MMETSP0890-20130614|1828_1  79 LHDQGKYDEAKPYYQRA 95 
                 5689********99865 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.013
   PF12729.2 130 elakegkkdeAyelyetelkpa 151
                  la++gk+deA+ely   l+ +
  MMETSP0890-20130614|1828_1 120 SLADQGKFDEAKELYGRALR-I 140
                 699************98874.3 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 1.3
   PF12729.2 138 deAyelyetelkparekviealdelvdlnl 167
                 + A ++y+++l p+  ++i+a   l d+ +
  MMETSP0890-20130614|1828_1 219 QRALDIYKAKLPPQHPDIIRAQMSLNDIDN 248
                 57999*********9999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.71
# Mc/sec: 874.16
//
Query:       MMETSP0890-20130614|1830_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.1   0.0       0.35   10.4   0.0    2.0  1  PF11427.3 Tc3 transposase
        2.1    6.0   5.2        1.5    6.5   2.6    1.3  1  PF11847.3 Domain of unknown function (DUF3367)
        4.9    7.2   7.2        8.3    6.4   0.6    2.6  2  PF08164.7 Apoptosis-antagonizing transcription factor, C-terminal
        7.1    6.1   8.8        2.5    7.6   0.5    2.2  2  PF11810.3 Domain of unknown function (DUF3332)


Domain annotation for each model (and alignments):
>> PF11427.3  Tc3 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0001      0.35      13      33 ..      23      43 ..      19      49 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0001
                HHHHHHTT--HHHHHHHHT-- CS
   PF11427.3 13 llvmkllnvklsEiarklsRs 33
                ++v+ +   k +E+ r+++R 
  MMETSP0890-20130614|1830_1 23 IDVIDEIYTKAHEMERRINRR 43
                89*****************95 PP

>> PF11847.3  Domain of unknown function (DUF3367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.6   0.00045       1.5     567     658 ..      39     133 ..       9     141 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00045
   PF11847.3 567 lrprvpalevyevagg.gapkaatlvdadallvvsggpesllrlaaagllegdsgpvvltadaeeaklpvad..vavtdgprarevdfgeveaat 658
                 +  r  al+ yeva++ + ++ a++  a+++++ ++   +l++++a+++ + ++ + + t+ a+e+kl+va   +a++++ ++r+ +fge  + +
  MMETSP0890-20130614|1830_1  39 RINRRFALHSYEVARKeKMAEIAAIEAAETTMRNETREVALAAMEAERADKMKQLAQIETDAARERKLNVARakKAMEAERQERVSEFGEHVKPS 133
                 33366799999999883445556666677778888888888888888888777555555555699998777767999999999999999955544 PP

>> PF08164.7  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6    0.0024       8.3      17      53 ..      71     109 ..      49     129 .. 0.71
   2 ?    3.8   0.5     0.016        55       8      44 ..     170     206 ..     165     224 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0024
   PF08164.7  17 snaese.eavllelakkkkKkkk..nVDtkASKGRklrye 53 
                  n e++ +a + + a++ +K+k+  +++t A + Rkl+  
  MMETSP0890-20130614|1830_1  71 RN-ETReVALAAMEAERADKMKQlaQIETDAARERKLNVA 109
                 22.23335555666666666664449***********865 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.016
   PF08164.7   8 liesksssssnaeseeavllelakkkkKkkknVDtkA 44 
                 +ie++++s+ + +++ +v++++ ++++K++   D kA
  MMETSP0890-20130614|1830_1 170 IIEQEIESERERQANREVAIAAMEQERKERMLMDSKA 206
                 7899999988888889999999999999999999998 PP

>> PF11810.3  Domain of unknown function (DUF3332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.5   0.00073       2.5      75     155 ..      18      93 ..      17     121 .. 0.75
   2 ?    2.2   1.9     0.034   1.1e+02     106     172 ..     151     217 ..     112     228 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00073
   PF11810.3  75 GsNPitgkpavadekvktilkvnkkldksltkapvkivvareeeektveqidekeeemevtvedgesktllgekedgkvkv 155
                 GsNP     +v de  ++  +++ +++ +   + +++   r+e+ ++++ i+  e++m ++ ++++ + +  e+ d   ++
  MMETSP0890-20130614|1830_1  18 GSNPF---IDVIDEIYTKAHEMERRINRRFALHSYEVA--RKEKMAEIAAIEAAETTMRNETREVALAAMEAERADKMKQL 93 
                 78888...777777667777777777777777777666..9***********************99999998887765554 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.034
   PF11810.3 106 kapvkivvareeeektveqidekeeemevtvedgesktllgekedgkvkvyldgevvtvvseeelea 172
                 +a +  + ++ee+ + +  i e+e e+e + ++ ++  ++ ++++ k  + +d++  t +++++  +
  MMETSP0890-20130614|1830_1 151 TAIYVRNISNEEQRARITAIIEQEIESERERQANREVAIAAMEQERKERMLMDSKADTHIEMQRELS 217
                 2222233688999999999999999999999999999999999988888888887777666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1520  (0.111176); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.73
# Mc/sec: 761.58
//
Query:       MMETSP0890-20130614|1831_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-10   38.2   0.2    1.1e-09   37.5   0.2    1.4  1  PF11789.3 Zinc-finger of the MIZ type in Nse subunit
     0.0021   17.5   0.4     0.0025   17.2   0.3    1.3  1  PF12813.2 XPG domain containing
  ------ inclusion threshold ------
        5.1    6.7  11.9      0.064   12.9   1.8    2.2  2  PF08595.6 RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.2   2.4e-13   1.1e-09       1      56 [.     167     224 ..     167     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 2.4e-13
                 XXXXXXX....XXXX-B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT--B------- CS
   PF11789.3   1 ddlavee....erislkCpltlkpfkePvtskkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                 d+++++e    ++++l++p+t+  f +P +skkC+Hv+   ++ +++  +k++kC  aGC
  MMETSP0890-20130614|1831_1 167 DEIEIDEtqhvSEAQLRDPITQTLFDKPQKSKKCRHVYSLLSVNSYF--SKTKKCAYAGC 224
                 677777766667889********************************..99********* PP

>> PF12813.2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   5.6e-07    0.0025     113     239 ..     128     254 ..      54     259 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.6e-07
   PF12813.2 113 hssfaelikrakksekvneksasykeflkey.lsleeeeaa..eatqlqlldsrvselvlqyelasfkaeeeapevylpilvedhsrrcaweegseirllAysllnlsr.eekgersesvaeylrrgqria 239
                 ++ ++e ++r+k++++ +e+ ++y++flk + l+ ++++     +++ +  +++++  ++q+   + + +++  +vy  + v ++  +++ +      + + ++l+ s    + + +  +++++r  qr a
  MMETSP0890-20130614|1831_1 128 DALISEQVDRSKRNASSVENDNDYQKFLKALkLNKNQDDDEieIDETQHVSEAQLRDPITQTLFDKPQKSKKCRHVYSLLSVNSYFSKTKKC----AYAGCHHVLSKSDfTRDPDTEILLRKFERLTQRQA 254
                 55567889***********************8333333333564444555566666666666555555688889999999998887776666....22244455544445445555556666666666555 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.4      0.38   1.7e+03      64      74 ..     162     172 ..     129     193 .. 0.47
   2 ?   12.9   1.8   1.4e-05     0.064      21      79 ..     208     279 ..     191     281 .] 0.60

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.38
   PF08595.6  64 dededdeeeed 74 
                 ++++dde e d
  MMETSP0890-20130614|1831_1 162 KNQDDDEIEID 172
                 11112222222 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.4e-05
   PF08595.6  21 aasskslkekvveYnGserkvls.............rkrkkkkkepridedenelddededdeeeededeee 79 
                   +s   k+k++ Y+G ++ + +             rk  +  +++  +++ +eld +++dd+  e +d+++
  MMETSP0890-20130614|1831_1 208 SVNSYFSKTKKCAYAGCHHVLSKsdftrdpdteillRKFERLTQRQATQNETDELDIDEDDDDAMEVDDDDD 279
                 5566667899******98877669999999888877555555444444444444443333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       923  (0.0675102); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 811.30
//
Query:       MMETSP0890-20130614|1832_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-19   69.6   0.0      2e-19   69.2   0.0    1.2  1  PF02114.11 Phosducin


Domain annotation for each model (and alignments):
>> PF02114.11  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   1.5e-23     2e-19      86     258 ..      78     248 ..      54     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.5e-23
  PF02114.11  86 slkeyelidkdk..ddeeflrkyrkqrmdemrqklskgprfkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvigasdrfsrdvlpallvykagellsnfvrvtd.qlaedffavdleaflqefgllpekevlvlesvrnsatch 258
                 +++e + ++ d    d+  l kyr  rm e+++  +   r++ v ++   e+++  ++   + t ++vh+yed ++ ++ l++ l+ la ey  +kf +++a    a + + +d +p l++y  ge+  ++   td +l  df  ++l+ +l  fg++   +    +s r  + c+
  MMETSP0890-20130614|1832_1  78 TIEELDELEEDElyADDAALAKYREARMRELKEA-QERNRYGTVENIGR-EDWMREVNDASQDTWVLVHLYEDCIEACQILDAMLVGLAKEYRALKFVRIRAR--AAVENWPEDKVPVLFLYYHGEMKHQLFGHTDrRLRTDFTLANLKQLLTPFGIFDSTNTTT-DSSRSKSFCY 248
                 5666666655532379999************976.5668*****99965.7788888888889**************************************97..5899********************999999835999***************998766544.4444445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.67
# Mc/sec: 1065.84
//
Query:       MMETSP0890-20130614|1835_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-25   87.1   0.0    1.4e-24   86.4   0.0    1.2  1  PF05903.9  PPPDE putative peptidase domain
    4.7e-09   35.8   0.0    1.9e-08   33.9   0.0    1.9  2  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0     2e-28   1.4e-24       2     138 ..     149     278 ..     148     284 .. 0.87

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 2e-28
   PF05903.9   2 kvklivydlsliktglarrvsllllGkklegiyhtgvevygkeyalggkekeesgitelkpkttsegakfresielgeTevteeevreileelsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPkwinrlarikl 138
                 +v l+ ydl  ++       +  +   +  g +h+++e+yg ey++gg++   +gi+ +kp++ +  +++r s+ lg++ +++++v+ il++l+  ++g +Y+L+ kNC  F++++   L  ++iP+wi +la+ + 
  MMETSP0890-20130614|1835_1 149 PVFLNYYDLGHSSF------FSNFNKISPYGAFHSAIEIYGAEYSFGGTKRDVTGIFVCKPRR-CALHTYRSSVYLGDCGLKRKQVETILRKLKPLWRGPDYELLRKNCCFFCREFTIELGLGEIPQWIYKLANLGS 278
                 68899999973332......222333333467****************77777**********.********************************************************************99876 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.8e-12   1.9e-08      17      84 ..       9      72 ..       1      73 [. 0.87
   2 ?   -1.4   0.0      0.28   1.9e+03      26      50 ..     215     239 ..     213     244 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 2.8e-12
                SSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSCSEE---E CS
  PF00168.25 17 ngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgkddflGea 84
                +++sdpy++v ++g+++   r+++i+ t++PvW     ++   e   ++++ ++d+d  + dd +Ge+
  MMETSP0890-20130614|1835_1  9 SSKSDPYCVVMVDGKEV--GRSSTITGTCDPVWPNPEWIK--VETWGRVTIRIWDWDITSDDDAMGEV 72
                679***********888..9*************9554444..5588889*****************98 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.28
                 EEEECTTEEEEEE--BSS-SSEEEE CS
  PF00168.25  26 vslggakskkkrTrvikntlnPvWn 50 
                 v+lg+   k+k+ ++i + l P W 
  MMETSP0890-20130614|1835_1 215 VYLGDCGLKRKQVETILRKLKPLWR 239
                 555664458899999*********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.90
# Mc/sec: 945.23
//
Query:       MMETSP0890-20130614|1833_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-32  111.1   0.0    2.5e-15   56.5   0.0    2.2  2  PF07534.11 TLD


Domain annotation for each model (and alignments):
>> PF07534.11  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   3.1e-18   4.3e-14       2      66 ..      86     150 ..      85     182 .. 0.89
   2 !   56.5   0.0   1.9e-19   2.5e-15      64     138 ..     255     326 ..     246     327 .. 0.96

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 3.1e-18
  PF07534.11   2 lyssskhgsslntflekieekgptlllikdekkyifGaflsqpwkssnkkfygdsesflfslspk 66 
                 lys s+hg ++ tf+++++ +++tl++++++++ ifGaf+s++w+  + ++yg++esf+f l+ +
  MMETSP0890-20130614|1833_1  86 LYSVSQHGANFGTFYSRVQFDSSTLMILENSDGAIFGAFTSSKWRPCSGEYYGTGESFVFALKAH 150
                 8*******************************************988889***********9654 PP

  == domain 2    score: 56.5 bits;  conditional E-value: 1.9e-19
  PF07534.11  64 spkfkvykstgknnaylntssdglgfGggqpkfsLwidsdlekgtsrhsetfgngslsedseerfkiedlEVWgl 138
                 +p++  y +tg n++++++s++++++Ggg+ +f+L++d+++ +g +  s+t+gn++l+  + ++f+i +lEVWg+
  MMETSP0890-20130614|1833_1 255 RPQVVKYAWTGANSYFMMASENSIALGGGG-DFALYLDDHFARGATGRSDTYGNKPLC--QRHHFDIVNLEVWGF 326
                 69999***********************98.***************************..9*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.89
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|1837_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.87
# Mc/sec: 217.60
//
Query:       MMETSP0890-20130614|1836_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-27   95.3   2.5    3.5e-26   90.7   1.9    2.0  2  PF01157.13 Ribosomal protein L21e


Domain annotation for each model (and alignments):
>> PF01157.13  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   1.9   2.6e-30   3.5e-26      27      99 .]       2      74 ..       1      74 [. 0.98
   2 !    2.5   0.0    0.0084   1.1e+02       7      49 ..      82     125 ..      79     131 .. 0.79

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 2.6e-30
                CCCC--------EEE---TT-------CCC------B-...TTTB---EECEEE----EEEEEE-CCCEEE-S CS
  PF01157.13 27 stalkeykeGdivdikingsvqkGmphkafhGktGrvvnvtkgavGvivnkkvkdrilekrinvrieHirpsk 99
                st+l++yk Gd+vdik+n++  kGmp+k +hG+tG+++n+tk avGv v k+v++ri++k++nvr+eH+ psk
  MMETSP0890-20130614|1836_1  2 STYLTTYKMGDYVDIKVNPAQVKGMPFKHYHGRTGVIYNITKRAVGVRVAKQVNGRIINKHLNVRVEHVTPSK 74
                89*******************************************************************9986 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0084
                 -TTTTTTTS--CCG---.--TCCCC--------EEE---TT--- CS
  PF01157.13   7 rrrtRkklkrkfRkrGv.splstalkeykeGdivdikingsvqk 49 
                 r +t +  k+k R+ G  +pl+++ k+ k+G ++ i  ++   +
  MMETSP0890-20130614|1836_1  82 RVKTNEAAKQKARESGEkVPLKRVPKQPKDGFVIAIPEQPETMQ 125
                 568889999999**996368999999999999998877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 403.44
//
Query:       MMETSP0890-20130614|1838_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.68
# Mc/sec: 1201.70
//
Query:       MMETSP0890-20130614|1841_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00023   21.2   0.0    0.00043   20.3   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
     0.0021   17.7   0.0     0.0068   16.1   0.0    1.8  2  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.027   14.3   0.0       0.05   13.4   0.0    1.6  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.4e-08   0.00043       1      71 [.      28      96 ..      28     101 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.4e-08
                EE--TTSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHHHH- CS
   PF13417.1  1 LygspfSpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLeddgevltdSlvIieyLeerf 71
                L+g+p+S  +   r aL+++g+++e+     +++++ + +    g+ P Le +g+ + +  +I  y++e++
  MMETSP0890-20130614|1841_1 28 LHGFPTSSTSVLTRFALHLRGIEFEEQTMEVKTRSDGMPDAV--GQKPYLEAEGRRIEQPGAIFNYINELH 96
                89***************************9999999999988..899*********************998 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.72   3.3e+03      44      60 ..       5      31 ..       4      32 .. 0.54
   2 !   16.1   0.0   1.5e-06    0.0068      11      46 ..     156     206 .]     145     206 .] 0.81

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.72
                HHHHHHHH---..........---TT- CS
   PF13410.1 44 lvrldaagpgl..........direay 60
                l++l+++g+++          +i++++
  MMETSP0890-20130614|1841_1  5 LGQLNVIGRHFsamaapavasTILHGF 31
                567777777664444444444555655 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.5e-06
                 TT-THGGG-----...............-SS.-------HHHHHHHHHHHH CS
   PF13410.1  11 lraaLdaleahLa...............dgpfllGdrpslaDialapflvr 46 
                 l+ ++++le+ L                +g++l Gd p+ aD+++ p +++
  MMETSP0890-20130614|1841_1 156 LEHGFSELEKVLSdpqamcldnacivpkHGTYLVGDSPTMADVFIQPLVHW 206
                 5567788888888888888877777775555**************999998 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.1e-05      0.05      46      67 ..     184     205 ..     156     206 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.1e-05
                 TSSSSSSSS-BHHHHHHHHHHH CS
  PF00043.20  46 gkkylvGdkltlADialfpale 67 
                 + +ylvGd++t+AD+++ p++ 
  MMETSP0890-20130614|1841_1 184 HGTYLVGDSPTMADVFIQPLVH 205
                 689************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 594.76
//
Query:       MMETSP0890-20130614|1839_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-56  187.9  37.1      3e-15   55.5   1.7    6.6  6  PF13414.1  TPR repeat
    3.6e-54  178.1  36.8    1.6e-11   43.1   0.4   10.0 10  PF00515.23 Tetratricopeptide repeat
    1.8e-45  149.1  33.2      5e-09   35.2   0.2   10.6 11  PF07719.12 Tetratricopeptide repeat
    5.6e-43  144.6  22.6    6.2e-14   51.5   0.5    5.8  6  PF13424.1  Tetratricopeptide repeat
    1.7e-35  118.1  26.7    9.5e-08   31.5   0.1    8.8  8  PF13431.1  Tetratricopeptide repeat
    1.1e-34  118.2  13.1    7.1e-07   29.6   0.1    7.5  8  PF13432.1  Tetratricopeptide repeat
    2.3e-34  114.3  18.2    8.4e-07   28.2   0.1   10.1 10  PF13176.1  Tetratricopeptide repeat
    8.3e-34  112.7  30.7      1e-06   27.9   0.2    9.8 10  PF13181.1  Tetratricopeptide repeat
    5.9e-32  107.1   4.3    3.2e-05   24.0   0.0    9.4 10  PF13428.1  Tetratricopeptide repeat
    8.3e-22   76.2  21.2    5.5e-05   22.8   0.0    8.1  8  PF13374.1  Tetratricopeptide repeat
    8.7e-16   57.7  25.3    0.00015   21.6   0.7    5.3  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    8.9e-16   57.0  18.3       0.22   11.9   0.0    9.5 10  PF13174.1  Tetratricopeptide repeat
    7.8e-12   44.5   7.2     0.0026   16.4   0.2    4.2  4  PF12569.3  NMDA receptor-regulated protein 1
    2.4e-09   36.7   9.6    0.00015   20.9   0.1    3.7  4  PF10373.4  Est1 DNA/RNA binding domain
    3.6e-09   36.2   5.6    1.5e-05   24.6   0.1    5.0  6  PF13371.1  Tetratricopeptide repeat
    3.9e-08   32.7  11.7      0.069   12.4   0.1    5.5  5  PF10602.4  26S proteasome subunit RPN7
    4.1e-08   32.5   3.7     0.0046   15.9   0.2    4.9  5  PF13429.1  Tetratricopeptide repeat
    5.4e-06   26.3   3.8      0.049   13.5   0.1    5.8  4  PF12688.2  Tetratrico peptide repeat
    1.9e-05   24.1   1.2       0.38   10.2   0.0    4.3  3  PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
    2.2e-05   23.5   2.5      0.054   12.3   1.8    4.0  1  PF02259.18 FAT domain
    2.6e-05   23.7   7.7       0.46   10.4   0.0    5.7  5  PF01535.15 PPR repeat
     0.0001   22.5   0.2          3    8.0   0.0    4.2  5  PF03704.12 Bacterial transcriptional activator domain
    0.00033   19.4   6.3       0.18   10.4   0.2    5.0  5  PF13281.1  Domain of unknown function (DUF4071)
    0.00041   20.0  21.3       0.94    9.2   0.1    8.0  9  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00053   20.0   0.2         38    5.0   0.1    5.5  5  PF07721.9  Tetratricopeptide repeat
    0.00058   20.3   7.4         19    5.9   0.2    5.6  4  PF08238.7  Sel1 repeat
    0.00099   18.7   2.8        1.7    8.3   0.1    3.6  3  PF08311.7  Mad3/BUB1 homology region 1
     0.0042   16.5   8.3        1.4    8.4   0.0    5.4  6  PF04781.7  Protein of unknown function (DUF627)
  ------ inclusion threshold ------
        0.1   12.3   0.0         16    5.3   0.0    3.8  4  PF10671.4  Toxin co-regulated pilus biosynthesis protein Q
       0.57   10.1   0.1       0.57   10.1   0.0    2.9  3  PF14346.1  Domain of unknown function (DUF4398)
        2.3    7.5  12.3        3.4    6.9   0.0    4.1  3  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   2.4   0.00013     0.056       4      68 ..      33      97 ..      30      98 .. 0.87
   2 !   12.7   0.3   0.00015     0.065       6      41 ..     100     136 ..      95     138 .. 0.85
   3 !   25.4   0.1   1.6e-08     7e-06       4      43 ..     143     182 ..     140     182 .. 0.94
   4 !   47.4   0.1   2.2e-15   9.9e-13      14      69 .]     182     236 ..     180     236 .. 0.96
   5 !   55.5   1.7   6.7e-18     3e-15       3      68 ..     239     303 ..     237     304 .. 0.96
   6 !   55.3   1.1   7.7e-18   3.4e-15       4      69 .]     308     372 ..     304     372 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
   PF13414.1  4 ealkelGnalfkegdydeAieayekAle.ldpnnaelyynlAlaylklgkdyeeAledyekAleld 68
                e+l  ++ +++ eg+y++A e++ +  e  +  ++e ++ l+++ +kl  +yee +e+   +++ d
  MMETSP0890-20130614|1839_1 33 EELLLKARNAYDEGNYHQARELCLEIKEdSNQVDPERLLLLGAIAYKLA-QYEESIEHNMACVRAD 97
                5788899****************99876356669***************.7******988887766 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00015
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnn.aelyy 41 
                 + e++ + f  g+ ++A++ y+ A+el +nn  ++++
  MMETSP0890-20130614|1839_1 100 FAEAAACEFDFGNTKKAVQSYQYAIELIENNlSNCHS 136
                 67889999*******************8887355775 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 1.6e-08
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynl 43 
                 + + + +n+l + gd ++Aie y kA++l+p++a++y nl
  MMETSP0890-20130614|1839_1 143 DMYTNYANCLKESGDRQGAIEIYLKATKLRPDCAIAYENL 182
                 5699*********************************997 PP

  == domain 4    score: 47.4 bits;  conditional E-value: 2.2e-15
   PF13414.1  14 fkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 ++ g+ ++Ai ++   ++ldp+  ++y+nl+ ay++ gk  e+A+++ye Al+++P
  MMETSP0890-20130614|1839_1 182 LECGKIKQAISLFHTTISLDPKFSDAYNNLGNAYREDGK-LEKAIHCYENALKISP 236
                 6789**********************************5.8*************99 PP

  == domain 5    score: 55.5 bits;  conditional E-value: 6.7e-18
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 A+a ++lGna+   g+  +Ai++ye A++l pn a + +nl+l++ ++g+ + +A+++y++A+++d
  MMETSP0890-20130614|1839_1 239 AHAMNNLGNAYKDCGETRKAIACYETAIRLAPNLAAANSNLGLVLKERGDLF-SAIQHYRQAIAID 303
                 899**********************************************988.8**********98 PP

  == domain 6    score: 55.3 bits;  conditional E-value: 7.7e-18
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 +a+ +lGnal + g +d+Ai++y  A+++ p+ ae+y+nlA ay  +g+   eA++ y+kAl ++P
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQ-LTEAVKFYRKALCIRP 372
                 5899********************************************5.79**********9887 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.6     7e+02      12      24 ..      43      55 ..      36      58 .. 0.84
   2 !    8.0   0.1    0.0046         2       4      25 ..      70      91 ..      67     100 .. 0.80
   3 !   10.2   0.2   0.00089      0.39       9      34 .]     105     130 ..     103     130 .. 0.88
   4 !   12.3   0.0    0.0002     0.086       4      34 .]     145     175 ..     142     175 .. 0.91
   5 !    7.7   0.0    0.0055       2.4       8      34 .]     178     204 ..     175     204 .. 0.87
   6 !   43.1   0.4   3.7e-14   1.6e-11       2      34 .]     206     238 ..     205     238 .. 0.97
   7 !   33.3   0.3   4.5e-11     2e-08       3      33 ..     241     271 ..     239     272 .. 0.95
   8 !   18.8   0.1   1.8e-06    0.0008       2      34 .]     274     306 ..     273     306 .. 0.93
   9 !   31.6   0.1   1.6e-10   6.9e-08       2      34 .]     308     340 ..     308     340 .. 0.97
  10 !   33.9   0.2     3e-11   1.3e-08       1      34 []     341     374 ..     341     374 .. 0.98

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.6
                HHTT-HHHHHHHH CS
  PF00515.23 12 lklgkydeAleyy 24
                +  g+y +A e +
  MMETSP0890-20130614|1839_1 43 YDEGNYHQARELC 55
                67899***99987 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0046
                HHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyye 25
                l  lG++ +kl +y+e +e+  
  MMETSP0890-20130614|1839_1 70 LLLLGAIAYKLAQYEESIEHNM 91
                5679***************965 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00089
                 HHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   9 naylklgkydeAleyyekALelnPnn 34 
                 ++ +  g+ ++A++ y+ A+el +nn
  MMETSP0890-20130614|1839_1 105 ACEFDFGNTKKAVQSYQYAIELIENN 130
                 5667779***************9987 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnPnn 34 
                 + n +n++ + g+ + A+e y kA +l+P++
  MMETSP0890-20130614|1839_1 145 YTNYANCLKESGDRQGAIEIYLKATKLRPDC 175
                 66779************************96 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.0055
                 HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   8 GnaylklgkydeAleyyekALelnPnn 34 
                 ++  l+ gk ++A+  +   ++l+P++
  MMETSP0890-20130614|1839_1 178 AYENLECGKIKQAISLFHTTISLDPKF 204
                 6666789******************96 PP

  == domain 6    score: 43.1 bits;  conditional E-value: 3.7e-14
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                 +a++nlGnay++ gk+++A+ +ye AL++ P++
  MMETSP0890-20130614|1839_1 206 DAYNNLGNAYREDGKLEKAIHCYENALKISPDH 238
                 8******************************96 PP

  == domain 7    score: 33.3 bits;  conditional E-value: 4.5e-11
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPn 33 
                 a +nlGnay   g+  +A+++ye A++l Pn
  MMETSP0890-20130614|1839_1 241 AMNNLGNAYKDCGETRKAIACYETAIRLAPN 271
                 789***************************9 PP

  == domain 8    score: 18.8 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                  a  nlG+++ + g++  A+++y++A+ ++ n+
  MMETSP0890-20130614|1839_1 274 AANSNLGLVLKERGDLFSAIQHYRQAIAIDQNF 306
                 5668**************************997 PP

  == domain 9    score: 31.6 bits;  conditional E-value: 1.6e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                 +a+ nlGna+ + g  d+A+++y  A+++ P++
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAIQCYFAAIQIKPDF 340
                 69*****************************97 PP

  == domain 10    score: 33.9 bits;  conditional E-value: 3e-11
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a+a+ nl+ ay  +g++ eA+++y+kAL ++P++
  MMETSP0890-20130614|1839_1 341 AEAYSNLASAYKDNGQLTEAVKFYRKALCIRPDF 374
                 89******************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6     0.016       7.1       4      26 ..      35      57 ..      33      60 .. 0.86
   2 !    8.2   0.1    0.0051       2.2       2      23 ..      68      89 ..      67      89 .. 0.90
   3 ?   -1.5   0.1       6.7     3e+03      14      23 ..      97     106 ..      93     106 .. 0.81
   4 ?    5.8   0.0      0.03        13      15      34 .]     111     130 ..     111     130 .. 0.92
   5 !   16.6   0.0   1.1e-05    0.0047       4      33 ..     145     174 ..     142     175 .. 0.93
   6 ?    5.9   0.0     0.028        12       7      33 ..     177     203 ..     175     204 .. 0.87
   7 !   35.2   0.2   1.1e-11     5e-09       2      34 .]     206     238 ..     205     238 .. 0.96
   8 !   27.7   0.1   2.8e-09   1.3e-06       1      33 [.     239     271 ..     239     272 .. 0.95
   9 !   20.9   0.1   4.4e-07   0.00019       1      33 [.     273     305 ..     273     306 .. 0.94
  10 !   16.1   0.0   1.5e-05    0.0068       2      33 ..     308     339 ..     307     340 .. 0.95
  11 !   22.8   0.1   1.1e-07   4.9e-05       1      28 [.     341     368 ..     341     374 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.016
                HHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafek 26
                l + ++ +y  g+y +A+e++ +
  MMETSP0890-20130614|1839_1 35 LLLKARNAYDEGNYHQARELCLE 57
                677899*************9876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0051
                HHHHHHHHHHHHTT-HHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAlea 23
                e l +lG ++ykl +yee +e+
  MMETSP0890-20130614|1839_1 68 ERLLLLGAIAYKLAQYEESIEH 89
                56889**************997 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 6.7
                 TT-HHHHHHH CS
  PF07719.12  14 lgdyeeAlea 23 
                  ++++eA+++
  MMETSP0890-20130614|1839_1  97 DKNFAEAAAC 106
                 5899999987 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.03
                 T-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  15 gdyeeAleafekAleldPnn 34 
                 g+ ++A++ ++ A+el  nn
  MMETSP0890-20130614|1839_1 111 GNTKKAVQSYQYAIELIENN 130
                 8999************8886 PP

  == domain 5    score: 16.6 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 + n ++++ ++gd + A+e + kA +l P+
  MMETSP0890-20130614|1839_1 145 YTNYANCLKESGDRQGAIEIYLKATKLRPD 174
                 7799*************************8 PP

  == domain 6    score: 5.9 bits;  conditional E-value: 0.028
                 HHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   7 lGlayyklgdyeeAleafekAleldPn 33 
                 +++  ++ g+ ++A+ +f   ++ldP+
  MMETSP0890-20130614|1839_1 177 IAYENLECGKIKQAISLFHTTISLDPK 203
                 56677889******************7 PP

  == domain 7    score: 35.2 bits;  conditional E-value: 1.1e-11
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a++nlG+ay++ g++e+A++++e Al++ P++
  MMETSP0890-20130614|1839_1 206 DAYNNLGNAYREDGKLEKAIHCYENALKISPDH 238
                 79*****************************97 PP

  == domain 8    score: 27.7 bits;  conditional E-value: 2.8e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a a +nlG+ay   g+  +A++++e A++l+Pn
  MMETSP0890-20130614|1839_1 239 AHAMNNLGNAYKDCGETRKAIACYETAIRLAPN 271
                 6789****************************9 PP

  == domain 9    score: 20.9 bits;  conditional E-value: 4.4e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a a+ nlGl++ ++gd+  A++++++A+++d n
  MMETSP0890-20130614|1839_1 273 AAANSNLGLVLKERGDLFSAIQHYRQAIAIDQN 305
                 67999*************************987 PP

  == domain 10    score: 16.1 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a+ nlG+a+ + g+ ++A++++  A+++ P+
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAIQCYFAAIQIKPD 339
                 69**************************9997 PP

  == domain 11    score: 22.8 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAl 28 
                 aea+ nl+ ay  +g++ eA+++++kAl
  MMETSP0890-20130614|1839_1 341 AEAYSNLASAYKDNGQLTEAVKFYRKAL 368
                 89*************************9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   1.2    0.0069         3      12      69 ..      39      90 ..      35      99 .. 0.66
   2 !   22.3   0.1   1.9e-07   8.4e-05      11      77 ..     103     173 ..      99     174 .. 0.84
   3 !   28.5   0.0   2.2e-09   9.7e-07      23      76 ..     189     235 ..     173     237 .. 0.80
   4 !   51.5   0.5   1.4e-16   6.2e-14       4      77 ..     204     270 ..     201     271 .. 0.93
   5 !   44.5   1.0   2.2e-14   9.6e-12       3      77 ..     237     304 ..     235     305 .. 0.95
   6 !   40.4   0.4   4.2e-13   1.8e-10       2      76 ..     304     371 ..     303     373 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0069
   PF13424.1 12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69
                a + + +g+y++A+el+ +  e   ++   +p     l+ l+ + ++l +y+e++e+ 
  MMETSP0890-20130614|1839_1 39 ARNAYDEGNYHQARELCLEIKEDSNQV---DP---ERLLLLGAIAYKLAQYEESIEHN 90
                677788999999998855554443333...33...34677888888888888888775 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.9e-07
   PF13424.1  11 lalvlrrlgdydeAlelyekalel.lrelgd...dhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  a + +  g+ ++A + y+ a+el    l +      d+ + ++n+an++ + gd + A+e + kA ++++
  MMETSP0890-20130614|1839_1 103 AAACEFDFGNTKKAVQSYQYAIELiENNLSNchsSTNDISDMYTNYANCLKESGDRQGAIEIYLKATKLRP 173
                 466667899999999999999999777776643367899999************************99986 PP

  == domain 3    score: 28.5 bits;  conditional E-value: 2.2e-09
   PF13424.1  23 eAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 +       a+ l+ ++   +p   +a+nnl+n+y++ g++++A+ ++e Al+i 
  MMETSP0890-20130614|1839_1 189 Q-------AISLFHTTISLDPKFSDAYNNLGNAYREDGKLEKAIHCYENALKIS 235
                 4.......44444444445789999**************************996 PP

  == domain 4    score: 51.5 bits;  conditional E-value: 1.4e-16
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 + +++nnl++++r+ g++++A+ +ye al++       +pd a a+nnl+n+y   g+  +A++++e A+++a+
  MMETSP0890-20130614|1839_1 204 FSDAYNNLGNAYREDGKLEKAIHCYENALKI-------SPDHAHAMNNLGNAYKDCGETRKAIACYETAIRLAP 270
                 6789***************************.......46779***************************9985 PP

  == domain 5    score: 44.5 bits;  conditional E-value: 2.2e-14
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 d a+++nnl+++++  g+  +A+++ye+a+ l+       p++a a  nl+ ++ ++gd+ +A++++++A++i++
  MMETSP0890-20130614|1839_1 237 DHAHAMNNLGNAYKDCGETRKAIACYETAIRLA-------PNLAAANSNLGLVLKERGDLFSAIQHYRQAIAIDQ 304
                 5599**************************998.......999*****************************987 PP

  == domain 6    score: 40.4 bits;  conditional E-value: 4.2e-13
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 +++ +++ nl+++l++ g  d+A+++y  a+++        pd a a+ nla +y   g++ eA+++++kAl i+
  MMETSP0890-20130614|1839_1 304 QNFKDAYINLGNALKEIGHMDQAIQCYFAAIQIK-------PDFAEAYSNLASAYKDNGQLTEAVKFYRKALCIR 371
                 677899***************************7.......9*****************************9665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0031       1.4      13      33 ..     142     162 ..     120     163 .. 0.84
   2 ?    0.2   0.1       2.3     1e+03       2      19 ..     165     182 ..     164     182 .. 0.88
   3 !   24.5   0.0   3.9e-08   1.7e-05       6      33 ..     198     225 ..     193     226 .. 0.94
   4 !   31.5   0.1   2.2e-10   9.5e-08       1      34 []     227     260 ..     227     260 .. 0.97
   5 !   20.4   0.0   7.9e-07   0.00035       1      34 []     261     294 ..     261     294 .. 0.95
   6 !   20.5   0.1   7.5e-07   0.00033       1      34 []     295     328 ..     295     328 .. 0.96
   7 !   25.0   0.1   2.7e-08   1.2e-05       1      33 [.     329     361 ..     329     362 .. 0.93
   8 ?   -1.6   0.0       8.5   3.8e+03       1      19 [.     363     381 ..     363     382 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0031
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 +d y+n+A++l++ Gd + A+
  MMETSP0890-20130614|1839_1 142 SDMYTNYANCLKESGDRQGAI 162
                 899*************99997 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 2.3
   PF13431.1   2 yekaleldPnnadaynnL 19 
                 y+ka +l P+ a ay nL
  MMETSP0890-20130614|1839_1 165 YLKATKLRPDCAIAYENL 182
                 9********988888886 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 3.9e-08
   PF13431.1   6 leldPnnadaynnLAelllnnGdleeAe 33 
                 + ldP+ +daynnL++++ + G+le+A+
  MMETSP0890-20130614|1839_1 198 ISLDPKFSDAYNNLGNAYREDGKLEKAI 225
                 789***********************97 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 2.2e-10
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 +ye+al+++P++a a+nnL++++++ G++++A++
  MMETSP0890-20130614|1839_1 227 CYENALKISPDHAHAMNNLGNAYKDCGETRKAIA 260
                 8*******************************85 PP

  == domain 5    score: 20.4 bits;  conditional E-value: 7.9e-07
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 +ye a++l+Pn a a  nL+++l+++Gdl  A+q
  MMETSP0890-20130614|1839_1 261 CYETAIRLAPNLAAANSNLGLVLKERGDLFSAIQ 294
                 8***************************988876 PP

  == domain 6    score: 20.5 bits;  conditional E-value: 7.5e-07
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 +y++a+++d n  day nL+++l+++G  ++A+q
  MMETSP0890-20130614|1839_1 295 HYRQAIAIDQNFKDAYINLGNALKEIGHMDQAIQ 328
                 69**************************999997 PP

  == domain 7    score: 25.0 bits;  conditional E-value: 2.7e-08
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 +y  a+++ P+ a+ay nLA ++++nG+l eA 
  MMETSP0890-20130614|1839_1 329 CYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAV 361
                 5778*************************9996 PP

  == domain 8    score: -1.6 bits;  conditional E-value: 8.5
   PF13431.1   1 lyekaleldPnnadaynnL 19 
                 +y+kal + P+  da+ nL
  MMETSP0890-20130614|1839_1 363 FYRKALCIRPDFDDAFANL 381
                 6999998889988888887 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.6   3.4e-08   1.5e-05       1      53 [.      36      89 ..      36      99 .. 0.90
   2 ?   -0.2   0.0       3.6   1.6e+03      38      57 ..     104     123 ..      99     128 .. 0.63
   3 !    8.6   0.0    0.0061       2.7       9      37 ..     154     182 ..     147     184 .. 0.91
   4 !   10.7   0.0    0.0013      0.57      11      42 ..     185     216 ..     185     217 .. 0.95
   5 !   26.3   0.0   1.7e-08   7.5e-06       3      41 ..     211     249 ..     210     251 .. 0.96
   6 !   23.9   0.3     1e-07   4.4e-05      11      61 ..     253     303 ..     253     305 .. 0.94
   7 !   21.6   0.0   5.2e-07   0.00023       9      63 ..     285     339 ..     282     339 .. 0.93
   8 !   29.6   0.1   1.6e-09   7.1e-07       2      58 ..     312     368 ..     311     377 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.4e-08
   PF13432.1  1 lalArallraGdydeAlaaleaalala.PeaaeallllaeallrlgrldeAaal 53
                l +Ar++++ G+y +A+++  ++ ++    ++e llll+ ++++l +++e+++ 
  MMETSP0890-20130614|1839_1 36 LLKARNAYDEGNYHQARELCLEIKEDSnQVDPERLLLLGAIAYKLAQYEESIEH 89
                579************************888********************9865 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 3.6
   PF13432.1  38 aeallrlgrldeAaallraa 57 
                 a + ++ g+ ++A++ ++ a
  MMETSP0890-20130614|1839_1 104 AACEFDFGNTKKAVQSYQYA 123
                 55566666666666655554 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0061
   PF13432.1   9 raGdydeAlaaleaalalaPeaaeallll 37 
                 ++Gd + A++++ +a +l P++a a+ +l
  MMETSP0890-20130614|1839_1 154 ESGDRQGAIEIYLKATKLRPDCAIAYENL 182
                 689**********************9876 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.0013
   PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeall 42 
                 G+ ++A+ ++ + + l+P+  +a+ +l+ a+ 
  MMETSP0890-20130614|1839_1 185 GKIKQAISLFHTTISLDPKFSDAYNNLGNAYR 216
                 7899*************************996 PP

  == domain 5    score: 26.3 bits;  conditional E-value: 1.7e-08
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeal 41 
                 l++a+ ++G++++A++++e al+  P++a a+ +l+ a+
  MMETSP0890-20130614|1839_1 211 LGNAYREDGKLEKAIHCYENALKISPDHAHAMNNLGNAY 249
                 89**********************************998 PP

  == domain 6    score: 23.9 bits;  conditional E-value: 1e-07
   PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalala 61 
                 G+ ++A+a++e+a++laP  a a  +l+ +l ++g+l  A++ +r+a+a++
  MMETSP0890-20130614|1839_1 253 GETRKAIACYETAIRLAPNLAAANSNLGLVLKERGDLFSAIQHYRQAIAID 303
                 6789******************************************99877 PP

  == domain 7    score: 21.6 bits;  conditional E-value: 5.2e-07
   PF13432.1   9 raGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                 ++Gd+  A++++++a+a +    +a+ +l+ al + g+ d+A++ + aa+++ Pd
  MMETSP0890-20130614|1839_1 285 ERGDLFSAIQHYRQAIAIDQNFKDAYINLGNALKEIGHMDQAIQCYFAAIQIKPD 339
                 689****************************************988888888886 PP

  == domain 8    score: 29.6 bits;  conditional E-value: 1.6e-09
   PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                  l++al + G+ d+A++++ aa+   P+ aea+ +la a+ + g+l eA++++r+al
  MMETSP0890-20130614|1839_1 312 NLGNALKEIGHMDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKAL 368
                 68999**************9999999*****************************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1         1   4.4e+02      12      23 ..      45      56 ..      38      64 .. 0.86
   2 ?    0.4   0.1       1.5   6.7e+02       2      21 ..      70      89 ..      70      99 .. 0.89
   3 ?    4.3   0.0     0.082        36      10      28 ..     108     126 ..     100     142 .. 0.80
   4 !   10.6   0.0   0.00079      0.35       2      32 ..     145     173 ..     145     178 .. 0.81
   5 ?    2.1   0.0      0.41   1.8e+02      11      32 ..     183     202 ..     175     205 .. 0.77
   6 !   28.2   0.1   1.9e-09   8.4e-07       1      34 [.     207     238 ..     207     239 .. 0.90
   7 !   25.7   0.1   1.2e-08   5.1e-06       1      32 [.     241     270 ..     241     274 .. 0.88
   8 ?    6.9   0.0     0.012       5.5       3      32 ..     277     304 ..     275     308 .. 0.80
   9 !   15.6   0.0     2e-05     0.009       1      30 [.     309     338 ..     309     342 .. 0.86
  10 !   21.8   0.0   2.1e-07   9.4e-05       1      34 [.     343     376 ..     343     378 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 1
   PF13176.1 12 lgdyekAielye 23
                 g+y +A el+ 
  MMETSP0890-20130614|1839_1 45 EGNYHQARELCL 56
                69******9986 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 1.5
   PF13176.1  2 llnLarlysrlgdyekAiel 21
                ll L+ +  +l +ye+ ie+
  MMETSP0890-20130614|1839_1 70 LLLLGAIAYKLAQYEESIEH 89
                68899999999*****9996 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.082
   PF13176.1  10 srlgdyekAielyeraLal 28 
                 ++ g+++kA++ y+ a++l
  MMETSP0890-20130614|1839_1 108 FDFGNTKKAVQSYQYAIEL 126
                 5679**********95544 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00079
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdp 32 
                 + n a++  ++gd++ Aie+y +  a +  p
  MMETSP0890-20130614|1839_1 145 YTNYANCLKESGDRQGAIEIYLK--ATKLRP 173
                 56889999***************..555444 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.41
   PF13176.1  11 rlgdyekAielyeraLaltkdp 32 
                 ++g+ ++Ai+l+     +  dp
  MMETSP0890-20130614|1839_1 183 ECGKIKQAISLFHT--TISLDP 202
                 389********998..666665 PP

  == domain 6    score: 28.2 bits;  conditional E-value: 1.9e-09
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 a++nL+++y+++g+ ekAi +ye   al+ +p++
  MMETSP0890-20130614|1839_1 207 AYNNLGNAYREDGKLEKAIHCYEN--ALKISPDH 238
                 89**********************..77777766 PP

  == domain 7    score: 25.7 bits;  conditional E-value: 1.2e-08
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdp 32 
                 a +nL+++y ++g+++kAi +ye   a++ +p
  MMETSP0890-20130614|1839_1 241 AMNNLGNAYKDCGETRKAIACYET--AIRLAP 270
                 679*********************..777666 PP

  == domain 8    score: 6.9 bits;  conditional E-value: 0.012
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdp 32 
                 +nL+ +  ++gd   Ai++y++  a++ d+
  MMETSP0890-20130614|1839_1 277 SNLGLVLKERGDLFSAIQHYRQ--AIAIDQ 304
                 799999999999999*******..665555 PP

  == domain 9    score: 15.6 bits;  conditional E-value: 2e-05
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 a+ nL+++  + g +++Ai++y +a++++ 
  MMETSP0890-20130614|1839_1 309 AYINLGNALKEIGHMDQAIQCYFAAIQIKP 338
                 799*******************99665554 PP

  == domain 10    score: 21.8 bits;  conditional E-value: 2.1e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 a++nLa++y + g+  +A+++y++aL ++ d +d
  MMETSP0890-20130614|1839_1 343 AYSNLASAYKDNGQLTEAVKFYRKALCIRPDFDD 376
                 79**********************9999888776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.71   3.1e+02       3      24 ..      34      55 ..      32      60 .. 0.76
   2 ?    4.3   0.0     0.082        36       4      32 ..      70      98 ..      67     100 .. 0.83
   3 ?    5.3   0.1      0.04        18      10      30 ..     106     126 ..     102     131 .. 0.86
   4 !   13.1   0.1   0.00013     0.057       3      33 ..     144     174 ..     129     175 .. 0.95
   5 ?   -1.2   0.0       4.6     2e+03      12      32 ..     182     202 ..     176     204 .. 0.76
   6 !   27.9   0.2   2.3e-09     1e-06       2      34 .]     206     238 ..     205     238 .. 0.95
   7 !   23.1   0.0   8.2e-08   3.6e-05       1      33 [.     239     271 ..     239     272 .. 0.94
   8 !   13.3   0.0   0.00011     0.047       3      33 ..     275     305 ..     273     306 .. 0.90
   9 !   18.8   0.1   1.8e-06    0.0008       2      34 .]     308     340 ..     307     340 .. 0.95
  10 !   21.0   0.1   3.8e-07   0.00017       1      32 [.     341     372 ..     341     374 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.71
                -TTT---HHHHTT-HHHHHHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeyl 24
                +++++++   + G+y++A e  
  MMETSP0890-20130614|1839_1 34 ELLLKARNAYDEGNYHQARELC 55
                677788888899*****98855 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.082
                TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                +++lG i  +l +y++++e+ + ++  ++
  MMETSP0890-20130614|1839_1 70 LLLLGAIAYKLAQYEESIEHNMACVRADK 98
                678999*************9777777666 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.04
                 HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  10 iYrqlGdydkAkeylekalel 30 
                 ++++ G+++kA ++++ a+el
  MMETSP0890-20130614|1839_1 106 CEFDFGNTKKAVQSYQYAIEL 126
                 78899***********99987 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 0.00013
                 -TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkpr 33 
                  y+n + ++++ Gd   A+e + ka +l p+
  MMETSP0890-20130614|1839_1 144 MYTNYANCLKESGDRQGAIEIYLKATKLRPD 174
                 699*************************997 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 4.6
                 HHTT-HHHHHHHHH---HHHH CS
   PF13181.1  12 rqlGdydkAkeylekalelkp 32 
                 ++ G++++A++ +   ++l+p
  MMETSP0890-20130614|1839_1 182 LECGKIKQAISLFHTTISLDP 202
                 567999999999988888888 PP

  == domain 6    score: 27.9 bits;  conditional E-value: 2.3e-09
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkprn 34 
                  ay+nlG +Yr+ G+ +kA+ ++e al+++p++
  MMETSP0890-20130614|1839_1 206 DAYNNLGNAYREDGKLEKAIHCYENALKISPDH 238
                 58*****************************85 PP

  == domain 7    score: 23.1 bits;  conditional E-value: 8.2e-08
                 ---TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkpr 33 
                 a+a +nlG +Y++ G++ kA++++e a+ l+p+
  MMETSP0890-20130614|1839_1 239 AHAMNNLGNAYKDCGETRKAIACYETAIRLAPN 271
                 57899**************************96 PP

  == domain 8    score: 13.3 bits;  conditional E-value: 0.00011
                 -TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkpr 33 
                 a  nlG+++++ Gd  +A++++++a+ ++++
  MMETSP0890-20130614|1839_1 275 ANSNLGLVLKERGDLFSAIQHYRQAIAIDQN 305
                 5669************************986 PP

  == domain 9    score: 18.8 bits;  conditional E-value: 1.8e-06
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkprn 34 
                  ay+nlG ++++ G +d+A++++  a+++kp++
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAIQCYFAAIQIKPDF 340
                 69****************************975 PP

  == domain 10    score: 21.0 bits;  conditional E-value: 3.8e-07
                 ---TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkp 32 
                 a+ay nl+++Y+++G+  +A ++++kal + p
  MMETSP0890-20130614|1839_1 341 AEAYSNLASAYKDNGQLTEAVKFYRKALCIRP 372
                 589************************96655 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.53   2.3e+02       4      32 ..      35      63 ..      32      76 .. 0.72
   2 ?    0.7   0.2       2.3     1e+03       3      37 ..      69     103 ..      67     105 .. 0.76
   3 ?    2.8   0.0      0.48   2.1e+02       7      34 ..     103     130 ..      97     132 .. 0.82
   4 !   11.7   0.0   0.00065      0.29       4      40 ..     145     181 ..     142     182 .. 0.89
   5 ?    6.7   0.0     0.027        12       9      42 ..     177     212 ..     175     212 .. 0.81
   6 !   18.2   0.0   5.5e-06    0.0024       2      41 ..     206     245 ..     205     247 .. 0.92
   7 !   18.8   0.0   3.4e-06    0.0015       6      42 ..     244     280 ..     239     281 .. 0.91
   8 !   15.5   0.1   3.9e-05     0.017       2      42 ..     274     314 ..     273     316 .. 0.92
   9 !   18.4   0.0   4.5e-06     0.002       2      43 ..     308     349 ..     307     350 .. 0.94
  10 !   24.0   0.0   7.2e-08   3.2e-05       1      41 [.     341     381 ..     341     384 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.53
   PF13428.1  4 llalarallalGdpdeAiallrralalaP 32
                ll+ ar   + G++ +A++l+ ++ +++ 
  MMETSP0890-20130614|1839_1 35 LLLKARNAYDEGNYHQARELCLEIKEDSN 63
                677799999***********998866544 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 2.3
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaea 37 
                  ll+l+++   l +++e i++  + ++++ + aea
  MMETSP0890-20130614|1839_1  69 RLLLLGAIAYKLAQYEESIEHNMACVRADKNFAEA 103
                 57899999999999999999876666666666665 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.48
   PF13428.1   7 larallalGdpdeAiallrralalaPdd 34 
                  a+  ++ G++++A++ ++ a++l  ++
  MMETSP0890-20130614|1839_1 103 AAACEFDFGNTKKAVQSYQYAIELIENN 130
                 67778899**********9998887666 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 0.00065
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealll 40 
                 +  +a+ l ++Gd ++Ai+ + +a +l Pd a a+ +
  MMETSP0890-20130614|1839_1 145 YTNYANCLKESGDRQGAIEIYLKATKLRPDCAIAYEN 181
                 7789**************************9887765 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.027
   PF13428.1   9 ral..lalGdpdeAiallrralalaPddaealllLa 42 
                 +a+  l+ G  ++Ai l+   ++l+P+  +a+ +L+
  MMETSP0890-20130614|1839_1 177 IAYenLECGKIKQAISLFHTTISLDPKFSDAYNNLG 212
                 555114569*********************998875 PP

  == domain 6    score: 18.2 bits;  conditional E-value: 5.5e-06
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllL 41 
                 +a+  l++a+++ G +++Ai +++ al+ +Pd+a a  +L
  MMETSP0890-20130614|1839_1 206 DAYNNLGNAYREDGKLEKAIHCYENALKISPDHAHAMNNL 245
                 68999****************************9987776 PP

  == domain 7    score: 18.8 bits;  conditional E-value: 3.4e-06
   PF13428.1   6 alarallalGdpdeAiallrralalaPddaealllLa 42 
                  l++a+ + G++ +Aia+++ a++laP+ a+a  +L+
  MMETSP0890-20130614|1839_1 244 NLGNAYKDCGETRKAIACYETAIRLAPNLAAANSNLG 280
                 699*************************999988776 PP

  == domain 8    score: 15.5 bits;  conditional E-value: 3.9e-05
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLa 42 
                 +a   l+ +l ++Gd+  Ai+++r+a+a + +  +a+++L+
  MMETSP0890-20130614|1839_1 274 AANSNLGLVLKERGDLFSAIQHYRQAIAIDQNFKDAYINLG 314
                 677889********************************998 PP

  == domain 9    score: 18.4 bits;  conditional E-value: 4.5e-06
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLar 43 
                 +a+  l++al + G+ d+Ai+++ +a++  Pd aea+ +La 
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAIQCYFAAIQIKPDFAEAYSNLAS 349
                 58899*********************************9996 PP

  == domain 10    score: 24.0 bits;  conditional E-value: 7.2e-08
   PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaealllL 41 
                 +ea+  la a+ ++G++ eA++ +r+al   Pd ++a  +L
  MMETSP0890-20130614|1839_1 341 AEAYSNLASAYKDNGQLTEAVKFYRKALCIRPDFDDAFANL 381
                 689******************************99998776 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.67     3e+02      13      29 ..      43      59 ..      39      67 .. 0.81
   2 ?   -0.6   0.0       2.8   1.2e+03       6      17 ..     129     140 ..     129     143 .. 0.89
   3 ?    3.4   0.0      0.15        67       3      28 ..     143     168 ..     141     172 .. 0.86
   4 !   20.7   0.0   5.4e-07   0.00024       2      31 ..     205     234 ..     204     235 .. 0.93
   5 !   16.0   0.1   1.7e-05    0.0074       2      28 ..     239     265 ..     238     269 .. 0.91
   6 !   14.5   0.2   4.9e-05     0.021       1      31 [.     272     302 ..     272     305 .. 0.93
   7 ?    6.0   0.0     0.024        10       3      22 ..     308     327 ..     308     330 .. 0.90
   8 !   22.8   0.0   1.2e-07   5.5e-05       2      32 ..     341     371 ..     340     371 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.67
   PF13374.1 13 rargryeeAlaleeeal 29
                ++ g+y +A++l  e+ 
  MMETSP0890-20130614|1839_1 43 YDEGNYHQARELCLEIK 59
                5669********98876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.8
   PF13374.1   6 nnLAlalrargr 17 
                 nnL + ++ +++
  MMETSP0890-20130614|1839_1 129 NNLSNCHSSTND 140
                 9*******9997 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.15
   PF13374.1   3 aalnnLAlalrargryeeAlaleeea 28 
                 + ++n A+ l + g+++ A +++ +a
  MMETSP0890-20130614|1839_1 143 DMYTNYANCLKESGDRQGAIEIYLKA 168
                 6689***************9999776 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 5.4e-07
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealai 31 
                 ++a+nnL++a+r+ g++e+A   +e al i
  MMETSP0890-20130614|1839_1 205 SDAYNNLGNAYREDGKLEKAIHCYENALKI 234
                 589*********************999987 PP

  == domain 5    score: 16.0 bits;  conditional E-value: 1.7e-05
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeea 28 
                 a a+nnL++a+ + g++++A a +e a
  MMETSP0890-20130614|1839_1 239 AHAMNNLGNAYKDCGETRKAIACYETA 265
                 789*****************9999987 PP

  == domain 6    score: 14.5 bits;  conditional E-value: 4.9e-05
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealai 31 
                 +aaa +nL+l+l +rg++  A +++++a ai
  MMETSP0890-20130614|1839_1 272 LAAANSNLGLVLKERGDLFSAIQHYRQAIAI 302
                 59999***********************998 PP

  == domain 7    score: 6.0 bits;  conditional E-value: 0.024
   PF13374.1   3 aalnnLAlalrargryeeAl 22 
                 +a+ nL++al + g  ++A 
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAI 327
                 6899*************995 PP

  == domain 8    score: 22.8 bits;  conditional E-value: 1.2e-07
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealair 32 
                 a a++nLA a+ + g++ eA++++++al ir
  MMETSP0890-20130614|1839_1 341 AEAYSNLASAYKDNGQLTEAVKFYRKALCIR 371
                 889**************************98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.4     2e-06   0.00087      21      80 ..      28      89 ..      18      91 .. 0.77
   2 !   16.6   0.8   1.3e-05    0.0055       3      81 ..     118     194 ..     116     197 .. 0.82
   3 !   21.6   0.7   3.5e-07   0.00015       2      83 ..     184     264 ..     183     265 .. 0.87
   4 !   19.4   0.9   1.7e-06   0.00076       2      83 ..     252     332 ..     251     333 .. 0.87
   5 ?    6.2   0.1     0.024        10      27      50 ..     343     366 ..     332     385 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2e-06
                T-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCB....HHHHHHHHHHHHHTT-HHHHCCC CS
   PF12895.2 21 kdpedaylyalAlclylngeykrAyellrkleldsss....lgcryllArcllklgkydeAiav 80
                k+++++ l+++A   y  g+y++A el+ +  +++ s    ++  +ll+  ++kl +y+e i++
  MMETSP0890-20130614|1839_1 28 KNNHKEELLLKARNAYDEGNYHQARELCLE--IKEDSnqvdPERLLLLGAIAYKLAQYEESIEH 89
                34477788999*****************55..4443334545555566************9975 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.3e-05
                 T-HHHHHHHHHHHCCC-ST-H..HHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHHHHHHHHTT-HHHHCCCH CS
   PF12895.2   3 hnyknAlflaekllaespkdp..edaylyalAlclylngeykrAyellrkleldssslgcryllArcllklgkydeAiavL 81 
                 + y+ A+ l+e  l+ +++++   ++++ ++A+cl ++g+ + A+e++  l+  +  ++c   +A   l++gk ++Ai+++
  MMETSP0890-20130614|1839_1 118 QSYQYAIELIENNLSNCHSSTndISDMYTNYANCLKESGDRQGAIEIY--LKATKLRPDC--AIAYENLECGKIKQAISLF 194
                 57999*************955545667777******************..7777766677..5677888889999999876 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 3.5e-07
                 TT-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2   2 qhnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavLek 83 
                 ++ +k+A+ l+   ++++pk +++ +   l++++ + g+ ++A++ +++ l++++ ++++   l+ ++ ++g+  +Aia++e 
  MMETSP0890-20130614|1839_1 184 CGKIKQAISLFHTTISLDPKFSDAYNN--LGNAYREDGKLEKAIHCYENaLKISPDHAHAMNNLGNAYKDCGETRKAIACYET 264
                 67899*************964233344..6*****************999999999988888889****************96 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 1.7e-06
                 TT-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHHH CS
   PF12895.2   2 qhnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrkleldssslgcryll.ArcllklgkydeAiavLek 83 
                 ++++++A+ ++e ++ ++p+   +a+  +l+l+l + g+  +A++ +r+    +++++ +y+  + +l + g +d+Ai+++ +
  MMETSP0890-20130614|1839_1 252 CGETRKAIACYETAIRLAPNL--AAANSNLGLVLKERGDLFSAIQHYRQAIAIDQNFKDAYINlGNALKEIGHMDQAIQCYFA 332
                 678899************953..3344445******************988888999****999****************976 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.024
                 CHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2  27 ylyalAlclylngeykrAyellrk 50 
                 ++ +lA ++  ng+ ++A++++rk
  MMETSP0890-20130614|1839_1 343 AYSNLASAYKDNGQLTEAVKFYRK 366
                 444579999999999999999987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       1.1   4.8e+02       4      22 ..      36      54 ..      34      58 .. 0.76
   2 ?    1.6   0.1      0.97   4.3e+02       3      21 ..      70      88 ..      69      89 .. 0.79
   3 ?    3.3   0.1      0.27   1.2e+02       7      27 ..     104     124 ..      98     126 .. 0.79
   4 ?    6.5   0.0     0.026        12       5      32 ..     147     174 ..     143     174 .. 0.89
   5 ?   -1.3   0.0         8   3.5e+03       8      31 ..     177     202 ..     176     203 .. 0.73
   6 !   11.9   0.0   0.00049      0.22       5      33 .]     210     238 ..     206     238 .. 0.91
   7 !   10.8   0.0    0.0011      0.49       5      32 ..     244     271 ..     240     271 .. 0.93
   8 ?    5.6   0.0     0.051        22       5      28 ..     278     301 ..     275     303 .. 0.91
   9 !    7.9   0.0    0.0095       4.2       1      27 [.     308     334 ..     308     339 .. 0.85
  10 !   11.1   0.2   0.00089      0.39       1      26 [.     342     367 ..     342     368 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  4 yklalsyyklgdtdeAlea 22
                ++ a+  y  g++ +A+e+
  MMETSP0890-20130614|1839_1 36 LLKARNAYDEGNYHQAREL 54
                66677777766*****984 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.97
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  3 lyklalsyyklgdtdeAle 21
                l++l+ + ykl +++e++e
  MMETSP0890-20130614|1839_1 70 LLLLGAIAYKLAQYEESIE 88
                678888888855***9987 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerli 27 
                 a + +  g+t +A++ ++  i
  MMETSP0890-20130614|1839_1 104 AACEFDFGNTKKAVQSYQYAI 124
                 66777746*********9666 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   5 klalsyyklgdtdeAlealerlikeyPd 32 
                 ++a ++++ gd + A+e++ +  k  Pd
  MMETSP0890-20130614|1839_1 147 NYANCLKESGDRQGAIEIYLKATKLRPD 174
                 6899****77*********999999987 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 8
                 HHHHHH..HHHHHHHHHHHHHHHH-T CS
   PF13174.1   8 lsyykl..gdtdeAlealerlikeyP 31 
                  +y++l  g+  +A+ ++   i+  P
  MMETSP0890-20130614|1839_1 177 IAYENLecGKIKQAISLFHTTISLDP 202
                 56777678899999999977776655 PP

  == domain 6    score: 11.9 bits;  conditional E-value: 0.00049
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   5 klalsyyklgdtdeAlealerlikeyPdS 33 
                 +l+ +y++ g+ ++A+  +e+ +k  Pd+
  MMETSP0890-20130614|1839_1 210 NLGNAYREDGKLEKAIHCYENALKISPDH 238
                 79******77***************9996 PP

  == domain 7    score: 10.8 bits;  conditional E-value: 0.0011
                 HHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   5 klalsyyk.lgdtdeAlealerlikeyPd 32 
                 +l+ +y+  + +t++A++ +e  i+  P+
  MMETSP0890-20130614|1839_1 244 NLGNAYKDcG-ETRKAIACYETAIRLAPN 271
                 7999****99.**************9997 PP

  == domain 8    score: 5.6 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +l+l++++ gd   A++ +++ i+
  MMETSP0890-20130614|1839_1 278 NLGLVLKERGDLFSAIQHYRQAIA 301
                 7999****88***********985 PP

  == domain 9    score: 7.9 bits;  conditional E-value: 0.0095
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   1 dAlyklalsyyklgdtdeAlealerli 27 
                 dA+ +l+ ++++ g+ d+A++ +   i
  MMETSP0890-20130614|1839_1 308 DAYINLGNALKEIGHMDQAIQCYFAAI 334
                 7999********88*******885555 PP

  == domain 10    score: 11.1 bits;  conditional E-value: 0.00089
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   1 dAlyklalsyyklgdtdeAlealerl 26 
                 +A+ +la +y+ +g+ +eA++ +++ 
  MMETSP0890-20130614|1839_1 342 EAYSNLASAYKDNGQLTEAVKFYRKA 367
                 6999********99*********996 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1    0.0001     0.045     207     271 ..     116     186 ..      80     189 .. 0.85
   2 !    8.4   0.0    0.0016      0.69     208     257 ..     184     233 ..     175     239 .. 0.89
   3 !   16.4   0.2   5.8e-06    0.0026     197     266 ..     241     312 ..     235     319 .. 0.91
   4 !   10.8   0.0   0.00029      0.13     206     256 ..     318     368 ..     313     381 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0001
   PF12569.3 207 klgsrekaleyidkaie....htptlvelymtkarilkhaGdlekAaelmeearkl..DlaDRyiNskcak 271
                  ++s++ a+e+i++ ++    +t  + ++y + a+ lk++Gd ++A e+  +a kl  D+a  y N +c k
  MMETSP0890-20130614|1839_1 116 AVQSYQYAIELIENNLSnchsSTNDISDMYTNYANCLKESGDRQGAIEIYLKATKLrpDCAIAYENLECGK 186
                 5789999*****998863322577889**************************999778888888888877 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0016
   PF12569.3 208 lgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAaelmeeark 257
                  g+ ++a+++  + i+ +p++ + y + ++ +++ G lekA ++ e+a k
  MMETSP0890-20130614|1839_1 184 CGKIKQAISLFHTTISLDPKFSDAYNNLGNAYREDGKLEKAIHCYENALK 233
                 567889***************************************99965 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 5.8e-06
   PF12569.3 197 alyflAqhydklgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAaelmeearklDl..aDRyiN 266
                 a++ l   y+  g++ ka+ + ++ai+  p l     + + +lk+ Gdl  A +   +a ++D+  +D yiN
  MMETSP0890-20130614|1839_1 241 AMNNLGNAYKDCGETRKAIACYETAIRLAPNLAAANSNLGLVLKERGDLFSAIQHYRQAIAIDQnfKDAYIN 312
                 566677889999***************************************************8557****9 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00029
   PF12569.3 206 dklgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAaelmeear 256
                 +++g++++a+++  +ai+ +p + e y + a+ +k+ G+l++A++   +a 
  MMETSP0890-20130614|1839_1 318 KEIGHMDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKAL 368
                 5678999*************************************9998885 PP

>> PF10373.4  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.3   2.8e+03       1      15 [.     161     175 ..     161     179 .. 0.81
   2 ?    6.0   0.0     0.012       5.2       2      62 ..     191     251 ..     190     257 .. 0.91
   3 !   20.9   0.1   3.4e-07   0.00015       1      62 [.     258     319 ..     258     324 .. 0.97
   4 !   14.5   0.1   3.2e-05     0.014       1      57 [.     326     382 ..     326     386 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.3
   PF10373.4   1 AlrYYllAasllPss 15 
                 A++ Yl+A++l P+ 
  MMETSP0890-20130614|1839_1 161 AIEIYLKATKLRPDC 175
                 6778*********97 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.012
   PF10373.4   2 lrYYllAasllPssGnpyNQlaviatyagdeldavYyylRSlavrnpfptAreNLkllfek 62 
                 ++ ++  +sl P+  ++yN l+  +  +g+   a+ +y  +l  +  +  A +NL  ++++
  MMETSP0890-20130614|1839_1 191 ISLFHTTISLDPKFSDAYNNLGNAYREDGKLEKAIHCYENALKISPDHAHAMNNLGNAYKD 251
                 6667888999*********************************************999988 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 3.4e-07
   PF10373.4   1 AlrYYllAasllPssGnpyNQlaviatyagdeldavYyylRSlavrnpfptAreNLkllfek 62 
                 A+ +Y  A++l+P+   +   l+++    gd + a+ +y  ++a ++ f+ A+ NL  ++++
  MMETSP0890-20130614|1839_1 258 AIACYETAIRLAPNLAAANSNLGLVLKERGDLFSAIQHYRQAIAIDQNFKDAYINLGNALKE 319
                 789******************************************************99997 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 3.2e-05
   PF10373.4   1 AlrYYllAasllPssGnpyNQlaviatyagdeldavYyylRSlavrnpfptAreNLk 57 
                 A+++Y  A+++ P+  ++y  la  +  +g+  +av +y ++l+ r  f+ A  NL 
  MMETSP0890-20130614|1839_1 326 AIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKALCIRPDFDDAFANLV 382
                 899****************************************************96 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.6   1.2e+03      27      50 ..      61      88 ..      50     106 .. 0.72
   2 ?    0.6   0.0         1   4.6e+02      34      58 ..     102     126 ..      98     135 .. 0.87
   3 ?   -1.6   0.0       5.1   2.3e+03      31      44 ..     171     184 ..     152     208 .. 0.68
   4 !   24.6   0.1   3.5e-08   1.5e-05       3      64 ..     213     274 ..     211     277 .. 0.93
   5 !   14.4   0.1   5.2e-05     0.023       9      64 ..     253     308 ..     245     311 .. 0.87
   6 !    7.1   0.0    0.0097       4.3       9      64 ..     321     376 ..     313     384 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.6
   PF13371.1 27 d....dpyerRDrGlllaqlgclaaAae 50
                d    dp+ +   G + ++l ++++ +e
  MMETSP0890-20130614|1839_1 61 DsnqvDPERLLLLGAIAYKLAQYEESIE 88
                4444588888888999999999998887 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 1
   PF13371.1  34 DrGlllaqlgclaaAaedLeaflel 58 
                 + + +++  g+   A++ +++++el
  MMETSP0890-20130614|1839_1 102 EAAACEFDFGNTKKAVQSYQYAIEL 126
                 678999999************9975 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 5.1
   PF13371.1  31 erRDrGlllaqlgc 44 
                 +r D +++++ l+c
  MMETSP0890-20130614|1839_1 171 LRPDCAIAYENLEC 184
                 56677888888876 PP

  == domain 4    score: 24.6 bits;  conditional E-value: 3.5e-08
   PF13371.1   3 aiylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                 ++y + ++ e+A+ ++e  l ++Pd+++     G ++   g+ + A++++e+++ l+p+  +
  MMETSP0890-20130614|1839_1 213 NAYREDGKLEKAIHCYENALKISPDHAHAMNNLGNAYKDCGETRKAIACYETAIRLAPNLAA 274
                 7999*****************************************************97555 PP

  == domain 5    score: 14.4 bits;  conditional E-value: 5.2e-05
   PF13371.1   9 edferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                 +++ +A+a++e  ++laP+ +      Gl+l ++g+l  A++ ++++++ + +  d
  MMETSP0890-20130614|1839_1 253 GETRKAIACYETAIRLAPNLAAANSNLGLVLKERGDLFSAIQHYRQAIAIDQNFKD 308
                 67889***************************************999987766555 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.0097
   PF13371.1   9 edferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                 +++++A++++   ++++Pd ++ +   + ++   g+l++A++ ++ +l   pd +d
  MMETSP0890-20130614|1839_1 321 GHMDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKALCIRPDFDD 376
                 68999***********************************9999988877775444 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.24     1e+02      94     139 ..     129     197 ..     120     206 .. 0.68
   2 !    8.0   0.1    0.0035       1.5      36      63 ..     205     232 ..     199     239 .. 0.89
   3 !   12.4   0.1   0.00016     0.069      34      63 ..     237     266 ..     232     275 .. 0.87
   4 !    6.7   0.1    0.0085       3.8      19      62 ..     289     333 ..     276     335 .. 0.83
   5 !    7.5   0.0    0.0047       2.1      31      62 ..     336     367 ..     334     370 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.24
   PF10602.4  94 kylekaksllekggd.......................werrnrlkvyeGlaalanrkfkeaaelllds 139
                 ++l+ ++s+  +  d                       ++++ r  ++ +  +l ++k k+a +l++ +
  MMETSP0890-20130614|1839_1 129 NNLSNCHSSTNDISDmytnyanclkesgdrqgaieiylKATKLRPDCAIAYENLECGKIKQAISLFHTT 197
                 455555555555555555555556666666777888888888888888888888888888888888776 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0035
   PF10602.4  36 rraledlaehYlkigdleeAlkaysrar 63 
                  +a+++l++ Y + g+le+A+ +y+ a+
  MMETSP0890-20130614|1839_1 205 SDAYNNLGNAYREDGKLEKAIHCYENAL 232
                 67999********************986 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00016
   PF10602.4  34 sirraledlaehYlkigdleeAlkaysrar 63 
                 + + a+++l++ Y ++g++++A+++y+ a 
  MMETSP0890-20130614|1839_1 237 DHAHAMNNLGNAYKDCGETRKAIACYETAI 266
                 56789*********************9975 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0085
   PF10602.4  19 Ldaelkdak.enlikesirraledlaehYlkigdleeAlkaysra 62 
                 L + ++ ++    i+ + ++a+ +l++   +ig +++A+++y +a
  MMETSP0890-20130614|1839_1 289 LFSAIQHYRqAIAIDQNFKDAYINLGNALKEIGHMDQAIQCYFAA 333
                 55666777656689999*************************765 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0047
   PF10602.4  31 ikesirraledlaehYlkigdleeAlkaysra 62 
                 ik + ++a+ +la  Y + g+l eA+k+y++a
  MMETSP0890-20130614|1839_1 336 IKPDFAEAYSNLASAYKDNGQLTEAVKFYRKA 367
                 7788999**********************997 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3      0.11        49       6     100 ..      30     123 ..      25     126 .. 0.70
   2 ?    2.1   0.0      0.17        73     226     273 ..     116     167 ..      97     174 .. 0.62
   3 !    6.8   0.0    0.0063       2.8     153     182 ..     212     241 ..     205     246 .. 0.87
   4 !   15.9   0.2     1e-05    0.0046     154     274 ..     247     367 ..     243     369 .. 0.84
   5 !    6.3   0.0    0.0086       3.8     149     191 ..     344     386 ..     325     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.11
   PF13429.1   6 epsnealkl.AnllyakgdfkkAlevLksaadkaapskdeeyWrtladLAwalqdddtaraAyrqLlasgkaraedyerliellydaepkdAarla 100
                 +  +e l l A+ +y++g++ +A e   + +++ +++ d e + +l++ A +l +++++ +     ++ +k  ae +     + ++++  +++++a
  MMETSP0890-20130614|1839_1  30 NH-KEELLLkARNAYDEGNYHQARELCLE-IKEDSNQVDPERLLLLGAIAYKLAQYEESIEHNMACVRADKNFAEAAACEFDFGNTKKAVQSYQYA 123
                 33.45555559999999999999998855.555557899999999999999999999998876666666666555555555555666666666655 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.17
   PF13429.1 226 lLgrpkkALeylrkqa...ksnskdplwlla.YADaleaaGradeAwrlRre 273
                 +++ ++ A e++++ +    s  +d++++ + YA  l+ +G ++ A ++  +
  MMETSP0890-20130614|1839_1 116 AVQSYQYAIELIENNLsncHSSTNDISDMYTnYANCLKESGDRQGAIEIYLK 167
                 4555566666666543111456677777754477777777777777766544 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0063
   PF13429.1 153 aellrqegqkkkAlrllrralalkpassdl 182
                  +++r+ g+ +kA++++++al+ +p+ + +
  MMETSP0890-20130614|1839_1 212 GNAYREDGKLEKAIHCYENALKISPDHAHA 241
                 6789********************997765 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 1e-05
   PF13429.1 154 ellrqegqkkkAlrllrralalkpassdlraallWlliDlgrraelrealaawkaeaesdsaLwgpfaa...ayllLgrpkkALeylrkqaksnskdplwllaYADaleaaGradeAwrlRrev 274
                 +++++ g++ kA++++++a++l+p+ + ++++l  +l ++g    l +a+++++++ + d++ + +++    a   +g  ++A + +    + +++ +      A a + +G+  eA +  r++
  MMETSP0890-20130614|1839_1 247 NAYKDCGETRKAIACYETAIRLAPNLAAANSNLGLVLKERG---DLFSAIQHYRQAIAIDQNFKDAYINlgnALKEIGHMDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKA 367
                 689999******************99999999977777666...4558*********888888888765111556667899*******999999988888999**********99999987776 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.0086
   PF13429.1 149 llaraellrqegqkkkAlrllrralalkpassdlraallWlli 191
                 ++ +a+++++ gq  +A++ +r+al   p+ +d+ a+l+  l+
  MMETSP0890-20130614|1839_1 344 YSNLASAYKDNGQLTEAVKFYRKALCIRPDFDDAFANLVHSLV 386
                 667899***********************99999999988876 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.59   2.6e+02      97     116 ..      71      90 ..      19      94 .. 0.76
   2 ?    2.1   0.0      0.38   1.7e+02       6      29 ..     103     125 ..      96     137 .. 0.78
   3 ?    4.3   0.2     0.079        35       9     101 ..     213     299 ..     205     301 .. 0.73
   4 !   13.5   0.1   0.00011     0.049      15      96 ..     287     362 ..     278     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.59
   PF12688.2  97 ivlraladhlprYqrsvrny 116
                 ++l a+a +l++Y+ s++ +
  MMETSP0890-20130614|1839_1  71 LLLGAIAYKLAQYEESIEHN 90 
                 5799***********99876 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.38
   PF12688.2   6 eragarDstGeeakAvplYrrAla 29 
                 ++a+ +D+ G+ +kAv+ Y+ A++
  MMETSP0890-20130614|1839_1 103 AAACEFDF-GNTKKAVQSYQYAIE 125
                 35666665.9**********9975 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.079
   PF12688.2   9 garDstGeeakAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaeapgdelddalaaflALaLssagrereavaivlra 101
                  a+   G+ +kA+  Y++Al+       + +a+  l+ + +  G++ +++a  e++++ ap+    +a +  l L+L+++g+   a++   +a
  MMETSP0890-20130614|1839_1 213 NAYREDGKLEKAIHCYENALKIS---PDHAHAMNNLGNAYKDCGETRKAIACYETAIRLAPN---LAAANSNLGLVLKERGDLFSAIQHYRQA 299
                 56667788999999999999865...444567778888888999999999888888887776...5566677788888888777777665555 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 0.00011
   PF12688.2  15 GeeakAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaeapgdelddalaaflALaLssagrereava 96 
                 G+  +A++ Yr+A+a    +++ + a+i l+ +L+ +G+++++++   a+++ +p+  + +a +  lA a +++g+ +eav+
  MMETSP0890-20130614|1839_1 287 GDLFSAIQHYRQAIAI---DQNFKDAYINLGNALKEIGHMDQAIQCYFAAIQIKPD--FAEAYS-NLASAYKDNGQLTEAVK 362
                 5666899******994...788999********************99999997666..766655.45667788888888876 PP

>> PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012       5.5      51      80 ..     187     216 ..     183     221 .. 0.93
   2 !   10.2   0.0   0.00086      0.38      51      81 ..     221     251 ..     217     266 .. 0.91
   3 ?    2.9   0.1      0.15        65      53      83 ..     291     321 ..     277     380 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHH-TT-HHHHHH---HHH CS
   PF06552.7  51 indaiskleealvidPkkhdalWcignayt 80 
                 i++ais +   + +dPk  da   +gnay 
  MMETSP0890-20130614|1839_1 187 IKQAISLFHTTISLDPKFSDAYNNLGNAYR 216
                 899*************************96 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00086
                 HHHHHHHHHHHHHH-TT-HHHHHH---HHHH CS
   PF06552.7  51 indaiskleealvidPkkhdalWcignayts 81 
                 ++ ai  +e+al i P + +a+  +gnay  
  MMETSP0890-20130614|1839_1 221 LEKAIHCYENALKISPDHAHAMNNLGNAYKD 251
                 6789*************************75 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHH-TT-HHHHHH---HHHHHH CS
   PF06552.7  53 daiskleealvidPkkhdalWcignaytsfa 83 
                  ai  + +a+ id + +da   +gna    +
  MMETSP0890-20130614|1839_1 291 SAIQHYRQAIAIDQNFKDAYINLGNALKEIG 321
                 5777777777777777777777777765443 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   1.8   0.00012     0.054     224     337 ..     208     336 ..      45     368 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00012
  PF02259.18 224 dselksglte...kleeisstnlekeetkllarcflklGewleklksnweqekkdeilkaystatefdpqwykawhswalanfev......vqaeesekkreee..................trseyvvpavkgflksial 337
                 +++l++ + e    ++ i+  +   +  +++a +++ lG++ +        ++ ++++ +y+ta+ + p+++ a ++++l  +e+      +q++++      +                  + + ++ +a+++++ +i+ 
  MMETSP0890-20130614|1839_1 208 YNNLGNAYREdgkLEKAIHCYENALKISPDHAHAMNNLGNAYKDC------GETRKAIACYETAIRLAPNLAAANSNLGLVLKERgdlfsaIQHYRQ------AiaidqnfkdayinlgnalKEIGHMDQAIQCYFAAIQI 336
                 333333332255322222222234566677777777888888888......8888888888888888888888888888887665221111444443......14445558888888888889999999999999999875 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       3.6   1.6e+03      13      29 ..      45      61 ..      44      62 .. 0.88
   2 ?   -0.0   0.0       2.3     1e+03      13      24 ..     184     195 ..     182     196 .. 0.90
   3 !    8.8   0.0    0.0034       1.5       2      24 ..     207     229 ..     206     233 .. 0.91
   4 ?    2.7   0.0       0.3   1.3e+02       4      24 ..     243     263 ..     240     267 .. 0.88
   5 !   10.4   0.0     0.001      0.46       2      25 ..     343     366 ..     342     369 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 3.6
  PF01535.15 13 aGkleeAlelfkeMkek 29
                +G++  A el  e+ke+
  MMETSP0890-20130614|1839_1 45 EGNYHQARELCLEIKED 61
                6999*******999986 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 2.3
  PF01535.15  13 aGkleeAlelfk 24 
                 +Gk++ A++lf+
  MMETSP0890-20130614|1839_1 184 CGKIKQAISLFH 195
                 79*********6 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0034
  PF01535.15   2 tynslIsgyckaGkleeAlelfk 24 
                 +yn l ++y   Gkle+A+ +++
  MMETSP0890-20130614|1839_1 207 AYNNLGNAYREDGKLEKAIHCYE 229
                 6*****************98876 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.3
  PF01535.15   4 nslIsgyckaGkleeAlelfk 24 
                 n l ++y  +G+ ++A+ +++
  MMETSP0890-20130614|1839_1 243 NNLGNAYKDCGETRKAIACYE 263
                 88899***********99886 PP

  == domain 5    score: 10.4 bits;  conditional E-value: 0.001
  PF01535.15   2 tynslIsgyckaGkleeAlelfke 25 
                 +y+ l s+y  +G+l eA++++++
  MMETSP0890-20130614|1839_1 343 AYSNLASAYKDNGQLTEAVKFYRK 366
                 69*******************986 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       5.2   2.3e+03     104     124 ..     105     125 ..      79     132 .. 0.70
   2 ?   -0.4   0.0       2.7   1.2e+03     104     124 ..     150     170 ..     143     174 .. 0.81
   3 !    7.6   0.0    0.0087       3.8      68     122 ..     177     231 ..     163     238 .. 0.89
   4 !    8.0   0.0    0.0068         3      59     123 ..     202     266 ..     193     275 .. 0.89
   5 !    7.7   0.1    0.0082       3.6      51     121 ..     296     366 ..     237     370 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 5.2
  PF03704.12 104 rAlyrsGrqaeALevYrrlrr 124
                  + ++ G+ ++A + Y+ + +
  MMETSP0890-20130614|1839_1 105 ACEFDFGNTKKAVQSYQYAIE 125
                 456677777777777776555 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 2.7
  PF03704.12 104 rAlyrsGrqaeALevYrrlrr 124
                  +l  sG+++ A+e Y ++ +
  MMETSP0890-20130614|1839_1 150 NCLKESGDRQGAIEIYLKATK 170
                 68999***********98766 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0087
  PF03704.12  68 lieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrrl 122
                 ++ ++l++g+ +++++  +  ++l+P   +++  l  A+   G+ ++A+++Y+++
  MMETSP0890-20130614|1839_1 177 IAYENLECGKIKQAISLFHTTISLDPKFSDAYNNLGNAYREDGKLEKAIHCYENA 231
                 455789**********************************************986 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0068
  PF03704.12  59 elrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrrlr 123
                  ++  a+  l  a  + g+ e+++  +e++++  P + ++   l  A+ ++G+  +A+++Y+++ 
  MMETSP0890-20130614|1839_1 202 PKFSDAYNNLGNAYREDGKLEKAIHCYENALKISPDHAHAMNNLGNAYKDCGETRKAIACYETAI 266
                 5677788888889999999******************************************9875 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.0082
  PF03704.12  51 eaererleelrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrr 121
                   ++ ++++++  a+  l  a  ++g+ +++++ + a+++ +P   +++  l  A+ + G+  eA + Yr+
  MMETSP0890-20130614|1839_1 296 YRQAIAIDQNFKDAYINLGNALKEIGHMDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRK 366
                 334446788899999999999999*********************************************97 PP

>> PF13281.1  Domain of unknown function (DUF4071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.071        31     190     226 ..      40      79 ..      28     106 .. 0.79
   2 !   10.4   0.2   0.00041      0.18     151     262 ..     116     243 ..     113     246 .. 0.64
   3 ?   -1.2   0.0       1.3   5.9e+02     237     263 ..     286     313 ..     277     329 .. 0.75
   4 ?   -0.1   0.0      0.64   2.8e+02     225     256 ..     306     339 ..     302     347 .. 0.81
   5 ?    2.7   0.0     0.088        39     231     256 ..     348     373 ..     345     383 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.071
   PF13281.1 190 RN..keGdrekAlevllellekkekvssdvycllGRi.yK 226
                 RN   eG+  +A e++le+ e +++v ++ + llG i yK
  MMETSP0890-20130614|1839_1  40 RNayDEGNYHQARELCLEIKEDSNQVDPERLLLLGAIaYK 79 
                 552258*****************************99555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00041
   PF13281.1 151 dvqdydamvkLvek.lkalptlqlaetvliqeqyafALnrRNkeGdrekAlevllellekkekvssdvycl.lGRiyKDr..fleseeedkes................lkkaiewYrkgFevdpneyaGiN 262
                 +vq y+  ++L+e+ l++  + +  +   +   ya  L     +Gdr+ A+e+ l++ + +   +     l +G+i   +  f +    d +                 l+kai++Y+ +++++p+    +N
  MMETSP0890-20130614|1839_1 116 AVQSYQYAIELIENnLSNC-HSSTNDISDMYTNYANCLKE---SGDRQGAIEIYLKATKLRPDCAIAYENLeCGKIKQAIslFHTTISLDPKFsdaynnlgnayredgkLEKAIHCYENALKISPDHAHAMN 243
                 6899999999998425554.33355556666666666666...9*********99985555544444444446666654322433333333324445566666777777**************988655555 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.3
   PF13281.1 237 keslkkaiewYrkgFevdpn.eyaGiNl 263
                 +  l +ai+ Yr++  +d+n + a iNl
  MMETSP0890-20130614|1839_1 286 RGDLFSAIQHYRQAIAIDQNfKDAYINL 313
                 5567899999999999995514566776 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.64
   PF13281.1 225 yKDrfleseeedkes..lkkaiewYrkgFevdpn 256
                 +KD +++  +  ke   +++ai++Y  + +++p+
  MMETSP0890-20130614|1839_1 306 FKDAYINLGNALKEIghMDQAIQCYFAAIQIKPD 339
                 588888877776666669********99999986 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.088
   PF13281.1 231 eseeedkeslkkaiewYrkgFevdpn 256
                 +s ++d+ +l++a++ Yrk++ + p+
  MMETSP0890-20130614|1839_1 348 ASAYKDNGQLTEAVKFYRKALCIRPD 373
                 6899****************988875 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       2.4   1.1e+03       7      27 ..      34      54 ..      33      54 .. 0.83
   2 ?   -1.4   0.0       4.6     2e+03      27      44 ..      82      99 ..      80     108 .. 0.78
   3 ?    4.0   0.1     0.092        41      19      37 ..     111     129 ..      93     140 .. 0.82
   4 ?   -0.5   0.0       2.3     1e+03      18      32 ..     155     169 ..     152     174 .. 0.75
   5 !    9.2   0.1    0.0021      0.94      18      33 ..     218     233 ..     212     235 .. 0.90
   6 ?    0.5   0.0       1.2   5.1e+02      20      33 ..     254     267 ..     251     278 .. 0.83
   7 ?    5.3   0.0     0.036        16      17      33 ..     285     301 ..     271     307 .. 0.84
   8 ?    4.1   0.1     0.088        39      17      34 ..     319     336 ..     309     348 .. 0.83
   9 ?    4.1   0.1     0.083        37      16      32 ..     352     368 ..     339     370 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.4
                HHHHHHHHHHHTT-HHHHHHH CS
  PF04212.13  7 elikkAveaDeagkyeeAlel 27
                el+ kA +a ++g+y +A el
  MMETSP0890-20130614|1839_1 34 ELLLKARNAYDEGNYHQAREL 54
                677889999999999999875 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 4.6
                HHHHHHHHHHHHHHHCTT CS
  PF04212.13 27 lYkeAlelLlqalkyepn 44
                 Y+e++e+ +  + +++n
  MMETSP0890-20130614|1839_1 82 QYEESIEHNMACVRADKN 99
                699999999988888876 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.092
                 T-HHHHHHHHHHHHHHHHH CS
  PF04212.13  19 gkyeeAlelYkeAlelLlq 37 
                 g+  +A+++Y+ A+el + 
  MMETSP0890-20130614|1839_1 111 GNTKKAVQSYQYAIELIEN 129
                 78899**********9876 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 2.3
                 TT-HHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAl 32 
                 +g+ + A+e Y +A 
  MMETSP0890-20130614|1839_1 155 SGDRQGAIEIYLKAT 169
                 677788888888774 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.0021
                 TT-HHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAle 33 
                  gk+e+A+++Y++Al+
  MMETSP0890-20130614|1839_1 218 DGKLEKAIHCYENALK 233
                 69************97 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 1.2
                 -HHHHHHHHHHHHH CS
  PF04212.13  20 kyeeAlelYkeAle 33 
                 +  +A+ +Y+ A+ 
  MMETSP0890-20130614|1839_1 254 ETRKAIACYETAIR 267
                 56789999999997 PP

  == domain 7    score: 5.3 bits;  conditional E-value: 0.036
                 HTT-HHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAle 33 
                 e g++  A+++Y++A+ 
  MMETSP0890-20130614|1839_1 285 ERGDLFSAIQHYRQAIA 301
                 7899999********96 PP

  == domain 8    score: 4.1 bits;  conditional E-value: 0.088
                 HTT-HHHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAlel 34 
                 e g+ ++A+++Y  A+++
  MMETSP0890-20130614|1839_1 319 EIGHMDQAIQCYFAAIQI 336
                 67899**********997 PP

  == domain 9    score: 4.1 bits;  conditional E-value: 0.083
                 HHTT-HHHHHHHHHHHH CS
  PF04212.13  16 DeagkyeeAlelYkeAl 32 
                  ++g++ eA++ Y++Al
  MMETSP0890-20130614|1839_1 352 KDNGQLTEAVKFYRKAL 368
                 5799************8 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.085        38       5      23 ..      36      54 ..      35      57 .. 0.88
   2 ?   -0.4   0.0       4.8   2.1e+03       4      20 ..     208     224 ..     206     224 .. 0.85
   3 ?    1.6   0.0       1.1   4.7e+02       1      24 [.     239     262 ..     239     264 .. 0.85
   4 ?    1.5   0.0       1.1   4.9e+02       3      17 ..     275     289 ..     273     298 .. 0.78
   5 ?    3.6   0.0      0.24   1.1e+02       1      21 [.     341     361 ..     341     366 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.085
                ---HHHHHH-------HHH CS
   PF07721.9  5 laLArallalGdldeAral 23
                l+ Ar +++ G++ +Ar+l
  MMETSP0890-20130614|1839_1 36 LLKARNAYDEGNYHQAREL 54
                66799************98 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 4.8
                 H---HHHHHH------- CS
   PF07721.9   4 llaLArallalGdldeA 20 
                 + +L+ a+ + G l+ A
  MMETSP0890-20130614|1839_1 208 YNNLGNAYREDGKLEKA 224
                 5699********99987 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 1.1
                 HHHH---HHHHHH-------HHHH CS
   PF07721.9   1 arallaLArallalGdldeArall 24 
                 a+a  +L+ a+ + G+   A a  
  MMETSP0890-20130614|1839_1 239 AHAMNNLGNAYKDCGETRKAIACY 262
                 68899***********99997765 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 1.1
                 HH---HHHHHH---- CS
   PF07721.9   3 allaLArallalGdl 17 
                 a ++L+ +l ++Gdl
  MMETSP0890-20130614|1839_1 275 ANSNLGLVLKERGDL 289
                 5589**********7 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.24
                 HHHH---HHHHHH-------H CS
   PF07721.9   1 arallaLArallalGdldeAr 21 
                 a a+++LA a+ + G+l eA 
  MMETSP0890-20130614|1839_1 341 AEAYSNLASAYKDNGQLTEAV 361
                 5799*************9996 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.046        20       1      34 [.     205     231 ..     205     233 .. 0.73
   2 ?    5.7   0.0     0.049        22       1      34 [.     239     265 ..     239     268 .. 0.72
   3 ?    2.2   0.0      0.63   2.8e+02       3      34 ..     275     299 ..     273     301 .. 0.71
   4 ?    5.9   0.2     0.043        19       1      34 [.     341     367 ..     341     368 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.046
   PF08238.7   1 aeAqynLG.lyymylnGlgGvpkdpekAleWyekA 34 
                 ++A++nLG  y+  ++G       +ekA++ ye A
  MMETSP0890-20130614|1839_1 205 SDAYNNLGnAYR--EDGK------LEKAIHCYENA 231
                 68******6555..5664......45699999865 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.049
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekA 34 
                 a+A++nLG   +y++   G+++   kA+  ye A
  MMETSP0890-20130614|1839_1 239 AHAMNNLG--NAYKD-C-GETR---KAIACYETA 265
                 68******..43333.3.5777...899999877 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.63
   PF08238.7   3 AqynLGlyymylnGlgGvpkdpekAleWyekA 34 
                 A  nLGl++  +++ g    d+  A+++y++A
  MMETSP0890-20130614|1839_1 275 ANSNLGLVL--KER-G----DLFSAIQHYRQA 299
                 566788555..666.3....7788******99 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.043
   PF08238.7   1 aeAqynLG.lyymylnGlgGvpkdpekAleWyekA 34 
                 aeA+ nL+  y   +nG++ +     +A++ y+kA
  MMETSP0890-20130614|1839_1 341 AEAYSNLAsAYK--DNGQL-T-----EAVKFYRKA 367
                 688889996666..67763.4.....8*******9 PP

>> PF08311.7  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0043       1.9      95     125 ..     138     168 ..     113     169 .. 0.89
   2 ?    0.2   0.0       1.2   5.5e+02      97     125 ..     203     231 ..     175     232 .. 0.80
   3 !    8.3   0.1    0.0039       1.7      81     125 ..     323     367 ..     269     368 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0043
                 ---BHHHHHHHHHHHHHTT-HHHHHHHHH-- CS
   PF08311.7  95 gtklalfYeewaslleskgkfkkAeevlqlG 125
                  + ++ +Y ++a++l+++g+ + A e++ ++
  MMETSP0890-20130614|1839_1 138 TNDISDMYTNYANCLKESGDRQGAIEIYLKA 168
                 567899*********************9765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.2
                 -BHHHHHHHHHHHHHTT-HHHHHHHHH-- CS
   PF08311.7  97 klalfYeewaslleskgkfkkAeevlqlG 125
                 k +  Y + ++ + + gk++kA + ++ +
  MMETSP0890-20130614|1839_1 203 KFSDAYNNLGNAYREDGKLEKAIHCYENA 231
                 67888999999999999999999988876 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0039
                 -HHHHHHHHHH------BHHHHHHHHHHHHHTT-HHHHHHHHH-- CS
   PF08311.7  81 eprelfeylaskgigtklalfYeewaslleskgkfkkAeevlqlG 125
                   + + +y a+ +i    a+ Y + as ++ +g++++A++ ++++
  MMETSP0890-20130614|1839_1 323 MDQAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKA 367
                 4455667788889999**************************998 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.32   1.4e+02       2      51 ..      38      85 ..      37     140 .. 0.61
   2 ?    1.2   0.1      0.53   2.4e+02      62      79 ..     160     177 ..     116     200 .. 0.74
   3 !    8.4   0.0    0.0031       1.4      63      98 ..     224     259 ..     220     269 .. 0.86
   4 ?    0.6   0.0      0.81   3.6e+02      62      85 ..     257     280 ..     247     309 .. 0.71
   5 ?   -0.8   0.0       2.3     1e+03      60      95 ..     289     324 ..     285     328 .. 0.82
   6 ?    4.5   0.1     0.051        22      62     105 ..     325     368 ..     314     373 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.32
   PF04781.7  2 kardlfakgdyikALeliedlisdhgkdekalllhelqGeifvklakkte 51
                kar+ +++g+y +A el  ++  d ++         l G i +kla+  e
  MMETSP0890-20130614|1839_1 38 KARNAYDEGNYHQARELCLEIKEDSNQVD--PERLLLLGAIAYKLAQYEE 85
                57888888888888555433322222222..1333455666666666555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.53
   PF04781.7  62 asvecfseavllsslaAl 79 
                 +++e + +a++l +++A+
  MMETSP0890-20130614|1839_1 160 GAIEIYLKATKLRPDCAI 177
                 677777777777777744 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0031
   PF04781.7  63 svecfseavllsslaAlsLfelakelgsvkyYkkav 98 
                 ++ c+ +a ++s++ A+++ +l++ ++   + +ka+
  MMETSP0890-20130614|1839_1 224 AIHCYENALKISPDHAHAMNNLGNAYKDCGETRKAI 259
                 89**********************998777766665 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.81
   PF04781.7  62 asvecfseavllsslaAlsLfela 85 
                  ++ c+  a++l ++ A +  +l+
  MMETSP0890-20130614|1839_1 257 KAIACYETAIRLAPNLAAANSNLG 280
                 579999999999999865544444 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 2.3
   PF04781.7  60 llasvecfseavllsslaAlsLfelakelgsvkyYk 95 
                 l+ +++ +++a+++ ++   + ++l++ l+   + +
  MMETSP0890-20130614|1839_1 289 LFSAIQHYRQAIAIDQNFKDAYINLGNALKEIGHMD 324
                 788999999999999999999999999988765555 PP

  == domain 6    score: 4.5 bits;  conditional E-value: 0.051
   PF04781.7  62 asvecfseavllsslaAlsLfelakelgsvkyYkkavkkakeaL 105
                  +++c+  a+++ ++ A +  +la  ++ +    +avk  ++aL
  MMETSP0890-20130614|1839_1 325 QAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKAL 368
                 689*************9999999888887777777766666666 PP

>> PF10671.4  Toxin co-regulated pilus biosynthesis protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.93   4.1e+02      40      63 ..     197     220 ..     193     224 .. 0.87
   2 ?   -0.7   0.0       2.7   1.2e+03      40      61 ..     231     252 ..     228     258 .. 0.82
   3 ?   -0.9   0.0       3.1   1.4e+03      41      62 ..     300     321 ..     296     326 .. 0.84
   4 ?    5.3   0.0     0.037        16      39      67 ..     332     360 ..     330     372 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.93
   PF10671.4  40 patftgsfedAvsqvlealkaagk 63 
                 +++++  f+dA +++ +a++ +gk
  MMETSP0890-20130614|1839_1 197 TISLDPKFSDAYNNLGNAYREDGK 220
                 6788889************99886 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2.7
   PF10671.4  40 patftgsfedAvsqvlealkaa 61 
                 ++ ++ +  +A++++ +a+k+ 
  MMETSP0890-20130614|1839_1 231 ALKISPDHAHAMNNLGNAYKDC 252
                 567788889**********985 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 3.1
   PF10671.4  41 atftgsfedAvsqvlealkaag 62 
                 ++++++f+dA  ++ +alk  g
  MMETSP0890-20130614|1839_1 300 IAIDQNFKDAYINLGNALKEIG 321
                 67889*****999999998765 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.037
   PF10671.4  39 apatftgsfedAvsqvlealkaagkplqv 67 
                 a+++++ +f +A s++ +a+k++g   ++
  MMETSP0890-20130614|1839_1 332 AAIQIKPDFAEAYSNLASAYKDNGQLTEA 360
                 5788999***************9976654 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0013      0.57      47      75 ..      34      62 ..      32      67 .. 0.86
   2 ?   -2.2   0.1       8.4   3.7e+03      45      72 ..      96     124 ..      80     133 .. 0.63
   3 ?   -1.3   0.1       4.5     2e+03      74      94 ..     339     360 ..     304     367 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0013
   PF14346.1 47 ekLaaAkaalaegkyeeArrlaeqAeada 75
                e L +A++a++eg+y +Ar l  + + d+
  MMETSP0890-20130614|1839_1 34 ELLLKARNAYDEGNYHQARELCLEIKEDS 62
                67889***************998877775 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 8.4
   PF14346.1  45 AkekLaaA.kaalaegkyeeArrlaeqAe 72 
                 A +++a+A    ++ g+ ++A    + A+
  MMETSP0890-20130614|1839_1  96 ADKNFAEAaACEFDFGNTKKAVQSYQYAI 124
                 55555555455556666666655555555 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 4.5
   PF14346.1  74 d.aelAeakaeaakaqaalaea 94 
                 d ae++  +a+a+k + +l ea
  MMETSP0890-20130614|1839_1 339 DfAEAYSNLASAYKDNGQLTEA 360
                 2456666666666666655555 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.4       0.4   1.8e+02      90     164 ..      68     143 ..      18     173 .. 0.63
   2 ?    6.9   0.0    0.0076       3.4     127     165 ..     207     245 ..     196     266 .. 0.89
   3 ?    3.3   0.5       0.1        44     102     145 ..     325     368 ..     283     379 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.4
   PF09986.4  90 ertldeaiesYkLallcyelkkekkskkA..klalrlAWlyrdledeekeklflkkAlelykeayekekfpiegide 164
                 er l  ++ +YkLa +  ++ ++     A    a  +A+ ++  ++ +k  + +++A+el ++ +++ +++++ i++
  MMETSP0890-20130614|1839_1  68 ERLLLLGAIAYKLAQYEESIEHNMACVRAdkNFAEAAACEFDF-GNTKKAVQSYQYAIELIENNLSNCHSSTNDISD 143
                 5555566666666655544444444322211233334444444.334555566666666666666666665555554 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0076
   PF09986.4 127 lyrdledeekeklflkkAlelykeayekekfpiegidea 165
                  y++l++ + e+  l+kA+++y++a++ + ++ + ++++
  MMETSP0890-20130614|1839_1 207 AYNNLGNAYREDGKLEKAIHCYENALKISPDHAHAMNNL 245
                 699***********************9999888888765 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.1
   PF09986.4 102 LallcyelkkekkskkAklalrlAWlyrdledeekeklflkkAl 145
                  a++cy +  + k   A  + +lA  y+d ++ ++  +f++kAl
  MMETSP0890-20130614|1839_1 325 QAIQCYFAAIQIKPDFAEAYSNLASAYKDNGQLTEAVKFYRKAL 368
                 45555555555555666666666667777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:01.22
# Mc/sec: 768.01
//
Query:       MMETSP0890-20130614|1847_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-16   57.1  10.6    5.8e-08   31.7   0.5    3.9  4  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00053       7.3       4      36 .]      57      89 ..      54      89 .. 0.91
   2 !   31.7   0.5   4.3e-12   5.8e-08       2      34 ..      95     127 ..      94     129 .. 0.95
   3 !   23.6   0.4   1.6e-09   2.1e-05       2      35 ..     131     164 ..     130     165 .. 0.94
   4 !   13.3   0.3   2.8e-06     0.039       3      24 ..     150     171 ..     149     172 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00053
                E-TTEEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19  4 IGenvlIgpnvvigggviIGdnviIgagvvigg 36
                + +n+++ p +++ g v + d + ++ g++i g
  MMETSP0890-20130614|1847_1 57 VSKNSFVAPTATVEGLVRVNDAASVWYGATISG 89
                6789***************************76 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 4.3e-12
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                 + IGe+++Ig n+ i+g + IG+++ Ig+++++
  MMETSP0890-20130614|1847_1  95 ISIGEGSVIGDNASIVGETSIGEDTLIGPNATL 127
                 78*****************************97 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.6e-09
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvig 35 
                 tvI +++++ p+v i+ gv IG+ ++I+ag+ ++
  MMETSP0890-20130614|1847_1 131 TVISPGAVLEPGVLIHKGVSIGSEARIAAGSIVA 164
                 7999***************************986 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 2.8e-06
                 EE-TTEEE-TTEEEESSEBE-T CS
  PF00132.19   3 vIGenvlIgpnvvigggviIGd 24 
                  IG+ ++I ++++++++ iIG+
  MMETSP0890-20130614|1847_1 150 SIGSEARIAAGSIVAPDSIIGA 171
                 7999999999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 885.32
//
Query:       MMETSP0890-20130614|1848_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.5   0.8       0.19   11.4   0.1    1.9  2  PF12614.3 Ribosome recycling factor


Domain annotation for each model (and alignments):
>> PF12614.3  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.4e-05      0.19      40     106 ..      22      93 ..      12      99 .. 0.85
   2 ?   -2.5   0.0      0.28   3.8e+03      79      79 ..     185     185 ..     141     215 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   PF12614.3  40 rsRnwqltgeasklqsfleelkte.....eeeelrylikkiekallkhsdklepledklarLieenpnitla 106
                 r R+  ++   s++  + + ++++     ee+++++l    + +l++++ +le+++++l +L +e p++ la
  MMETSP0890-20130614|1848_1  22 RQRDIVVATPSSSWTLLESMVEKTcefgeEESKFTFLEDEDDDGLADEEKRLERVSERLEELEREVPELILA 93 
                 77777777777777777777766667777999***********************************98877 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.28
   PF12614.3  79 l 79 
                 +
  MMETSP0890-20130614|1848_1 185 Y 185
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       711  (0.0520041); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 1082.23
//
Query:       MMETSP0890-20130614|1855_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 597.74
//
Query:       MMETSP0890-20130614|1853_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-21   77.1   1.6    1.8e-21   76.7   0.3    1.7  2  PF01145.20 SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.3   1.3e-25   1.8e-21       1     169 [.      19     193 ..      19     209 .. 0.91
   2 ?   -1.1   0.0       0.1   1.4e+03     141     163 ..     225     247 ..     215     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 1.3e-25
  PF01145.20   1 ktvepgevgvvvr..fGkvkrvlepGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaa.......e 169
                 +tv+ ge++v+     G  + v+++G h k+P++e  + +++r++  +v      + +kD + ++++ +v  +    d + +++++  + ++ +++l +++++  ++v++ ++++e+l++r+++++e++n+l  + +++ i ++dv+it+ +++ e+ +a+++kq a+++a+       +
  MMETSP0890-20130614|1853_1  19 FTVQGGERAVLWSriAGVKESVYNEGMHPKIPLIEYPISFDVRTRPRNVQS---LTGSKDLQMINITLRVLSKPsiPDLPFIYKRL--GHDYDDRVLPSIVNEVTKAVVACYNASELLTKREQVSQEIRNRLLRRSADFRIVLEDVSITHLSFSSEYTAAVEAKQVAQQDAErsryiveK 193
                 5899*******5558888888******************************...****************997766999*9*****..***********************************************************************************988665431 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.1
  PF01145.20 141 dvritdvdpppevkqalakkqaa 163
                  v++++++  +e+++ +a++q  
  MMETSP0890-20130614|1853_1 225 FVQLRKIETAKEIASTIARAQSR 247
                 58899999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 932.98
//
Query:       MMETSP0890-20130614|1858_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-21   73.8   0.0    1.3e-20   73.3   0.0    1.2  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   9.5e-25   1.3e-20       2     159 .]      38     195 ..      37     195 .. 0.93

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 9.5e-25
  PF00650.15   2 eileggkvgihgrDkngrpvlylrlgrfdpk.....klseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafk.lvkpfldektreKikfvspsntpatlekyidpeqlpkelGGt 159
                  +++ ++ ++hg  ++g ++++  +g+ d++     +l+ ++ +r++++v e++  +  + g+ + ++ v D  gl++s++++  ++ll  ++++l +  P r  +i+i+naP++f+++++  +k +l+ ++r+K++++++++   +l +    e lp e+GGt
  MMETSP0890-20130614|1858_1  38 AVKQLYPHYLHGKARDGEVIMFELVGSLDTSslrngSLTTDDAFRHFVFVHEFIS-HKFQ-GEDTRLVSVLDVGGLRFSQVDSTLLRLLSATSNVLDNLVPFRAVRIYIINAPSWFSTVWNgAIKRALPTSVRDKVQVLKSTK---ALASLLGIE-LPREYGGT 195
                 5789999************************9999999999***********988.5555.699******************888***********************************96689**************7765...599999999.*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.92
# Mc/sec: 1625.36
//
Query:       MMETSP0890-20130614|1859_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-18   64.5   6.2      3e-09   36.2   0.2    4.0  5  PF13414.1  TPR repeat
    1.3e-17   63.7   1.2    2.7e-17   62.7   0.0    2.2  1  PF09229.6  Activator of Hsp90 ATPase, N-terminal
    2.4e-12   45.7   2.8      3e-05   23.2   0.0    3.7  3  PF00515.23 Tetratricopeptide repeat
    2.8e-10   39.1  11.5    1.1e-05   24.7   0.0    4.2  3  PF07719.12 Tetratricopeptide repeat
    1.5e-06   28.1   2.4     0.0025   18.1   0.3    3.5  3  PF13428.1  Tetratricopeptide repeat
    4.2e-06   26.7   1.1        0.2   12.0   0.1    3.8  3  PF13174.1  Tetratricopeptide repeat
    5.2e-06   26.1   0.4    1.1e-05   25.0   0.3    1.6  1  PF13371.1  Tetratricopeptide repeat
    1.4e-05   25.5   0.3    1.4e-05   25.5   0.2    2.8  2  PF13432.1  Tetratricopeptide repeat
    2.5e-05   23.9   2.9     0.0014   18.4   0.3    3.8  3  PF13424.1  Tetratricopeptide repeat
    2.8e-05   23.4  13.8     0.0055   16.2   0.0    4.0  3  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.4   0.4      0.043   13.8   0.3    1.9  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.033   13.9   0.1       0.54   10.1   0.0    2.8  2  PF13374.1  Tetratricopeptide repeat
      0.086   12.9   0.7        6.1    7.1   0.0    3.7  3  PF13431.1  Tetratricopeptide repeat
       0.17   11.6   2.0         16    5.4   0.0    3.8  3  PF13176.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.8e-08   5.7e-05       2      36 ..      52      86 ..      51      96 .. 0.93
   2 !   36.2   0.2   3.1e-12     3e-09       7      69 .]     125     186 ..     118     186 .. 0.96
   3 !   23.7   0.1   2.5e-08   2.4e-05       2      49 ..     154     201 ..     153     212 .. 0.89
   4 ?   -1.8   0.4       2.3   2.2e+03       6      22 ..     236     252 ..     231     255 .. 0.63
   5 ?   -3.2   0.8       6.3   6.1e+03      15      28 ..     283     296 ..     279     296 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.8e-08
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldpnn 36
                +A+++ke+Gn++fk+gd  +A+e+y k+le+ +++
  MMETSP0890-20130614|1859_1 52 KALEFKEKGNEYFKNGDKSGAVEEYLKGLEILEEC 86
                799***************************98765 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 3.1e-12
   PF13414.1   7 kelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +l++ ++k+ ++d+A+   +kAle++ +n +++y+++ a+ +l  +y++ ++d++k l++ P
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAVNISSKALEIECENVKALYRRGVALARLK-RYDASAKDLTKLLSIEP 186
                 699****************************************96.8*************998 PP

  == domain 3    score: 23.7 bits;  conditional E-value: 2.5e-08
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylk 49 
                 n +al+++G al ++++yd + + ++k l+++pnn e+   lAl+  +
  MMETSP0890-20130614|1859_1 154 NVKALYRRGVALARLKRYDASAKDLTKLLSIEPNNREAKRELALVQKE 201
                 6789***************************************99776 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.3
   PF13414.1   6 lkelGnalfkegdydeA 22 
                  +e+++ + k+++++eA
  MMETSP0890-20130614|1859_1 236 EREAAEHANKKRRHAEA 252
                 45666666666667666 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 6.3
   PF13414.1  15 kegdydeAieayek 28 
                 ++++ +eA+++y++
  MMETSP0890-20130614|1859_1 283 EAKKQKEAEAKYRE 296
                 67899999999986 PP

>> PF09229.6  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   2.7e-20   2.7e-17       1     132 [.     384     512 ..     384     515 .. 0.91

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 2.7e-20
                 -EE-HHHHHHHHHHHHHT-EE.E-SSEEEEEEEEE.EE-EEEEEE----EEEEEEEEEEEEEEEEETT---EE----EEEEEEECCCCTT----EE--SS-SHHHHHHHHTTTT---HHHHHHHTTHHHHHH CS
   PF09229.6   1 eKdatkwakeklkellknlkvkedeeskikitevskveGdasvsqrKGKkiflfelklklewegekkeeeekkvkGtveipelsseneeedyeieikvtdkkkeskelkallkkklvpkireklkkfvkeLk 132
                 e+  tkw  ++l+  l   + +    + i +t+v+k++G+as+++ +GK + +f++  klewe+   ++++  +kG++++pelss+ ++  ye +ik++++++ s+++ ++   k+ + ++ ++ +fv+e+ 
  MMETSP0890-20130614|1859_1 384 ERSQTKWVDDRLRHHLGTARCDFPTTNHICVTNVKKLSGEASIAVSRGKSRYIFDYVGKLEWEAV-LDGDS--YKGSINLPELSSTITDGRYEQQIKIKNSSAPSSPALQAALPKFQDAVNAAICNFVSEYQ 512
                 78899*************99777788889************************************.77777..9**************************9999999777777788999********99984 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00011      0.11       4      31 ..      56      83 ..      53      86 .. 0.88
   2 !    8.8   0.0    0.0012       1.1       5      30 ..     125     150 ..     122     151 .. 0.85
   3 !   23.2   0.0   3.1e-08     3e-05       1      34 []     155     188 ..     155     188 .. 0.97

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
                HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALeln 31
                ++ +Gn y+k+g+   A+e y k Le+ 
  MMETSP0890-20130614|1859_1 56 FKEKGNEYFKNGDKSGAVEEYLKGLEIL 83
                6789**********************96 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0012
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekALel 30 
                  nl++ y kl+++d+A+   +kALe+
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAVNISSKALEI 150
                 69**************9877777776 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 3.1e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 +kaly++G+a+ +l++yd   ++  k L+++Pnn
  MMETSP0890-20130614|1859_1 155 VKALYRRGVALARLKRYDASAKDLTKLLSIEPNN 188
                 58*******************************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1    0.0002      0.19       6      31 ..      58      83 ..      53      86 .. 0.88
   2 !    9.0   0.0    0.0013       1.3       5      30 ..     125     150 ..     122     154 .. 0.85
   3 !   24.7   0.0   1.2e-08   1.1e-05       2      34 .]     156     188 ..     155     188 .. 0.97

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0002
                HHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  6 nlGlayyklgdyeeAleafekAleld 31
                + G+ y+k+gd   A+e + k le+ 
  MMETSP0890-20130614|1859_1 58 EKGNEYFKNGDKSGAVEEYLKGLEIL 83
                689********************986 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0013
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAlel 30 
                  nl+++y+kl ++++A++   kAle+
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAVNISSKALEI 150
                 69**************9887777777 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +aly++G a+++l++y+  ++++ k l+++Pnn
  MMETSP0890-20130614|1859_1 156 KALYRRGVALARLKRYDASAKDLTKLLSIEPNN 188
                 79*****************************98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.8   7.7e+03      11      29 ..      63      81 ..      59      85 .. 0.82
   2 !    7.5   0.0    0.0066       6.4       3      29 ..     123     149 ..     121     152 .. 0.91
   3 !   18.1   0.3   2.5e-06    0.0025       2      42 ..     156     196 ..     155     198 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 7.8
   PF13428.1 11 llalGdpdeAiallrrala 29
                ++ +Gd  +A++ + + l+
  MMETSP0890-20130614|1859_1 63 YFKNGDKSGAVEEYLKGLE 81
                7889999999999998876 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0066
   PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                 ++l la  ++ l+++d+A++   +al+
  MMETSP0890-20130614|1859_1 123 LQLNLAMSYIKLEQWDDAVNISSKALE 149
                 6899*****************999987 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2.5e-06
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLa 42 
                 +al++++ al++l ++d+ ++ l ++l+  P++ ea ++La
  MMETSP0890-20130614|1859_1 156 KALYRRGVALARLKRYDASAKDLTKLLSIEPNNREAKRELA 196
                 699************************************99 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.6   1.6e+03      10      23 ..      63      76 ..      60      78 .. 0.85
   2 !   10.4   0.0   0.00065      0.64       3      22 ..     124     143 ..     122     150 .. 0.83
   3 !   12.0   0.1   0.00021       0.2       2      32 ..     157     187 ..     156     188 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.6
                HHHHHHHHHHHHHH CS
   PF13174.1 10 yyklgdtdeAleal 23
                y+k+gd++ A+e +
  MMETSP0890-20130614|1859_1 63 YFKNGDKSGAVEEY 76
                89989*****9966 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00065
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlea 22 
                 +++la+sy+kl ++d+A+ +
  MMETSP0890-20130614|1859_1 124 QLNLAMSYIKLEQWDDAVNI 143
                 59********88*****987 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlikeyPd 32 
                 Aly+++ ++ +l+++d++ + l +l++  P+
  MMETSP0890-20130614|1859_1 157 ALYRRGVALARLKRYDASAKDLTKLLSIEPN 187
                 9**********99*************99888 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   1.1e-08   1.1e-05       3      70 ..     129     196 ..     127     199 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.1e-08
   PF13371.1   3 aiylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelira 70 
                 + y+  e+++ A +++   l++  + +  ++ rG +la+l ++ a a+dL+  l  +p+ ++a +  a
  MMETSP0890-20130614|1859_1 129 MSYIKLEQWDDAVNISSKALEIECENVKALYRRGVALARLKRYDASAKDLTKLLSIEPNNREAKRELA 196
                 67999*****************************************************9999887555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.2     7e+03       3      20 ..      59      76 ..      58      82 .. 0.75
   2 !   25.5   0.2   1.4e-08   1.4e-05       1      64 [.     125     188 ..     125     198 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 7.2
   PF13432.1  3 lArallraGdydeAlaal 20
                ++++++++Gd   A++ +
  MMETSP0890-20130614|1859_1 59 KGNEYFKNGDKSGAVEEY 76
                688999999988777766 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.4e-08
   PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                 l lA++++++ ++d+A+++ ++al+ + e++ al+++++al+rl+r+d++a+ l ++l++ P++
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAVNISSKALEIECENVKALYRRGVALARLKRYDASAKDLTKLLSIEPNN 188
                 679************************99**********************8888888999886 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.22   2.1e+02      53      77 ..      60      84 ..      53      91 .. 0.64
   2 !   18.4   0.3   1.4e-06    0.0014       7      75 ..     123     184 ..     117     187 .. 0.88
   3 !    7.3   0.2     0.004       3.9       7      47 ..     157     197 ..     153     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.22
   PF13424.1 53 anlylalgdydeAleylekAleiae 77
                +n y + gd + A+e + k lei e
  MMETSP0890-20130614|1859_1 60 GNEYFKNGDKSGAVEEYLKGLEILE 84
                4445556666666666666666654 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 1.4e-06
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 +  nla ++ +l+++d+A ++  kale+ +        + ++al+  + ++++l++yd++ + l k l i
  MMETSP0890-20130614|1859_1 123 LQLNLAMSYIKLEQWDDAVNISSKALEIeC--------ENVKALYRRGVALARLKRYDASAKDLTKLLSI 184
                 568*************************77........33899999999999999999999999998887 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.004
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtar 47 
                 +l++ + +l rl++yd + + + k l +    +++  ++a 
  MMETSP0890-20130614|1859_1 157 ALYRRGVALARLKRYDASAKDLTKLLSIEPNNREAKRELAL 197
                 67899*********************998888888888776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.3    0.0051         5       7      30 ..      59      82 ..      55      84 .. 0.93
   2 !    8.5   0.1    0.0017       1.7       5      30 ..     125     150 ..     121     151 .. 0.91
   3 !   16.2   0.0   5.6e-06    0.0055       2      34 .]     156     188 ..     155     188 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0051
                ---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  7 lGdiYrqlGdydkAkeylekalel 30
                +G  Y+++Gd++ A e + k le+
  MMETSP0890-20130614|1859_1 59 KGNEYFKNGDKSGAVEEYLKGLEI 82
                7999****************9997 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0017
                 TT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeylekalel 30 
                 +nl++ Y +l ++d A +   kale+
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAVNISSKALEI 150
                 69*****************9999998 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 5.6e-06
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkprn 34 
                 ka+y++G +++ l++yd++ + l k l++ p+n
  MMETSP0890-20130614|1859_1 156 KALYRRGVALARLKRYDASAKDLTKLLSIEPNN 188
                 79*****************************75 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   4.4e-05     0.043      28      81 ..     124     178 ..     100     181 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCH CS
   PF12895.2  28 lyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavL 81 
                  ++lA ++ ++++++ A+++++k le++++++++ y  + +l  l++yd  ++ L
  MMETSP0890-20130614|1859_1 124 QLNLAMSYIKLEQWDDAVNISSKaLEIECENVKALYRRGVALARLKRYDASAKDL 178
                 4679********************************************9877666 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00055      0.54       5      31 ..     124     150 ..     121     153 .. 0.92
   2 ?    0.1   0.1      0.79   7.7e+02       9      22 ..     162     175 ..     157     184 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00055
   PF13374.1   5 lnnLAlalrargryeeAlaleeealai 31 
                 + nLA+ + ++ ++++A+++  +al+i
  MMETSP0890-20130614|1859_1 124 QLNLAMSYIKLEQWDDAVNISSKALEI 150
                 56***********************98 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.79
   PF13374.1   9 AlalrargryeeAl 22 
                 ++al++++ry++  
  MMETSP0890-20130614|1859_1 162 GVALARLKRYDASA 175
                 7899******9875 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.5   4.8e+02      17      33 ..     125     141 ..     116     142 .. 0.87
   2 ?    7.1   0.0    0.0063       6.1       4      31 ..     146     173 ..     145     176 .. 0.90
   3 ?   -1.5   0.0       3.6   3.5e+03       3      22 ..     179     198 ..     178     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.5
   PF13431.1  17 nnLAelllnnGdleeAe 33 
                  nLA  + ++ ++++A 
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAV 141
                 49*************96 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0063
   PF13431.1   4 kaleldPnnadaynnLAelllnnGdlee 31 
                 kale++ +n+ a+++++++l+++++++ 
  MMETSP0890-20130614|1859_1 146 KALEIECENVKALYRRGVALARLKRYDA 173
                 89999999****************9985 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.6
   PF13431.1   3 ekaleldPnnadaynnLAel 22 
                  k+l ++Pnn +a ++LA++
  MMETSP0890-20130614|1859_1 179 TKLLSIEPNNREAKRELALV 198
                 6899999*997776667665 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.94   9.2e+02       9      29 ..      63      81 ..      59      89 .. 0.82
   2 ?    5.4   0.0     0.017        16       3      21 ..     125     143 ..     122     151 .. 0.87
   3 ?    2.4   0.1      0.15   1.5e+02       1      30 [.     157     186 ..     157     192 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.94
   PF13176.1  9 ysrlgdyekAielyeraLalt 29
                y++ gd + A+e y +  +l+
  MMETSP0890-20130614|1859_1 63 YFKNGDKSGAVEEYLK--GLE 81
                9999********9999..765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.017
   PF13176.1   3 lnLarlysrlgdyekAiel 21 
                 lnLa  y +l ++++A+++
  MMETSP0890-20130614|1859_1 125 LNLAMSYIKLEQWDDAVNI 143
                 8***************975 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.15
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 al++ +++  rl +y+  ++ ++++L ++ 
  MMETSP0890-20130614|1859_1 157 ALYRRGVALARLKRYDASAKDLTKLLSIEP 186
                 688999**************9999665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1833  (0.13407); expected 273.4 (0.02)
Passed bias filter:                      517  (0.0378145); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.14u 0.45s 00:00:01.59 Elapsed: 00:00:00.85
# Mc/sec: 1457.55
//
Query:       MMETSP0890-20130614|1860_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-41  142.1   0.3    1.9e-41  141.2   0.1    1.5  2  PF00270.24 DEAD/DEAH box helicase
    9.9e-28   95.7   0.5    3.6e-27   93.9   0.2    1.9  2  PF00271.26 Helicase conserved C-terminal domain
    0.00046   19.7   0.2     0.0023   17.5   0.0    2.2  2  PF13245.1  Part of AAA domain
    0.00057   18.2   0.0       0.26    9.5   0.0    2.1  2  PF06862.7  Protein of unknown function (DUF1253)
     0.0009   19.0   0.0     0.0016   18.2   0.0    1.3  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.028   13.9   0.0      0.053   12.9   0.0    1.4  1  PF13604.1  AAA domain
      0.034   13.6   0.0      0.056   12.9   0.0    1.3  1  PF05127.9  Helicase
      0.047   12.6   0.0       0.11   11.4   0.0    1.5  2  PF00579.20 tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.1   1.1e-44   1.9e-41       2     170 ..      61     223 ..      60     226 .. 0.94
   2 ?   -3.3   0.0       2.8   4.8e+03      75     106 ..     298     332 ..     275     337 .. 0.64

  Alignments for each domain:
  == domain 1    score: 141.2 bits;  conditional E-value: 1.1e-44
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdv 170
                 +iQ++ai+ +l g+dv+++a+ G+GKT+ f+i +lq++ ++l   ++ +al++aPtreLa+q+++ + ++++ ++  +  ++gg+a + d+ ++l+ngv++vvgTpgr+ d+++++ l+l + +++ lDEad++ls gf+dq++++ + l  +++++v ++SAT+p dv
  MMETSP0890-20130614|1860_1  61 AIQQRAIKPMLLGRDVIAQAQSGTGKTATFSIGILQQIDQSL---HECQALVLAPTRELAQQIVKVMDNLAEFMSTMIHPCVGGTAVR-DDIRKLQNGVHVVVGTPGRVYDMINRRALRLADTKIFALDEADEMLSRGFKDQIYDVFKFL--PEQVRVALFSATMPLDV 223
                 69*********99*************************9865...689***********************9988999999*****77.9999**********************999*******************************9..666**********9666 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.8
                 SS.EEEEETTSSBHHHHHHHHH....T..-SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
  PF00270.24  75 pklrvlliiggvalardqlsvl....dngvdivvgT 106
                 +++ v +++g+++++ +++  +    ++  +++++T
  MMETSP0890-20130614|1860_1 298 KDFTVSAMHGDMDQK-ERDIIMrefrSGSSRVLITT 332
                 455677777777744.22222245666666666665 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   2.1e+03      10      38 ..     212     239 ..     204     242 .. 0.72
   2 !   93.9   0.2   2.1e-30   3.6e-27       5      78 .]     297     370 ..     294     370 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
                 EEEE-TTS-HHHHHHHHHHHHTTTSSEEE CS
  PF00271.26  10 vailhgelpqnereeileqfnagkskvlv 38 
                 va + + +++ + ++i ++f ++  ++lv
  MMETSP0890-20130614|1860_1 212 VALFSA-TMPLDVLDITQRFMQDPIRILV 239
                 444444.5666678899999999999988 PP

  == domain 2    score: 93.9 bits;  conditional E-value: 2.1e-30
                 H----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +k++ v ++hg++ q+er+ i+++f++g+s+vl++t+ ++rGid+++v++Vin+dlp+++++yi+riGR gR+g
  MMETSP0890-20130614|1860_1 297 AKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFG 370
                 678999******************************************************************87 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0023       8      62 ..      71     124 ..      64     152 .. 0.80
   2 ?   -0.7   0.0      0.64   1.1e+03       7      20 ..     148     163 ..     142     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.3e-06
   PF13245.1   8 a.gnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 
                   g+ +++ ++  GtGKT+t   +i + ++  +     + l++apt++ a+++ +++
  MMETSP0890-20130614|1860_1  71 LlGRDVIA-QAQSGTGKTATFSIGILQQID--QSLhECQALVLAPTRELAQQIVKVM 124
                 35789999.********************5..3555778**************9888 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.64
   PF13245.1   7 la..gnpllvvtGgPG 20 
                 ++  +n++ vv G PG
  MMETSP0890-20130614|1860_1 148 IRklQNGVHVVVGTPG 163
                 4455699*999****9 PP

>> PF06862.7  Protein of unknown function (DUF1253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00015      0.26      29      62 ..      96     129 ..      75     136 .. 0.83
   2 !    6.6   0.0    0.0011       1.9     315     387 ..     290     360 ..     263     371 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00015
   PF06862.7  29 elrdqgftrpkvLillpfrniakevvdlliklle 62 
                 +  dq++  ++ L+l p+r+ a+++v+ + +l+e
  MMETSP0890-20130614|1860_1  96 QQIDQSLHECQALVLAPTRELAQQIVKVMDNLAE 129
                 567***********************98876655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0011
   PF06862.7 315 rirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefpefYs 387
                  +++ +++++++  a++   ++k+   + + F +g+ ++L++t+ l   r + +++v+ vi y lP+++e Y 
  MMETSP0890-20130614|1860_1 290 WLTDGMTAKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLA--RGIDVQQVSLVINYDLPTNRENYI 360
                 5666778888888999999999*********************9776..89*****************99886 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.2e-07    0.0016      27      72 ..      75     126 ..      57     155 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.2e-07
  PF04851.10  27 rglivmaTGtGKTlvaa.....sliarlar.kflflvprkelleqaleefkk 72 
                  ++ ++  GtGKT +       ++++ l++ ++l+l+p++el +q  + +++
  MMETSP0890-20130614|1860_1  75 DVIAQAQSGTGKTATFSigilqQIDQSLHEcQALVLAPTRELAQQIVKVMDN 126
                 57788999*******996666556666666***************9877633 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-05     0.053       4      81 ..      61     143 ..      59     198 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
   PF13604.1   4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka.lrealeaa..gkrvvglAptgkaakvLeee....lgiearTiasllerld 81 
                 a Q++a++ +l  +d  ++ q+  GtGKt + +  + + ++++  + + ++lApt + a+++ +     ++  ++ i+  ++ ++
  MMETSP0890-20130614|1860_1  61 AIQQRAIKPMLLGRD--VIAQAQSGTGKTATFSIgILQQIDQSlhECQALVLAPTRELAQQIVKVmdnlAEFMSTMIHPCVGGTA 143
                 569999999998887..88999******9876644444444432248999*****999888655511114455555555555554 PP

>> PF05127.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.3e-05     0.056       3      51 ..      79     129 ..      77     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.3e-05
   PF05127.9   3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflekgle 51 
                 +A+ G+GK+a+  + + + + ++   ++ lv ap++e ++++++ + +  e
  MMETSP0890-20130614|1860_1  79 QAQSGTGKTATFSIGILQQIDQSLheCQALVLAPTRELAQQIVKVMDNLAE 129
                 6999*******999999988887667****************999866554 PP

>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.5   5.9e+03     219     244 ..     225     251 ..     222     260 .. 0.72
   2 ?   11.4   0.0   6.3e-05      0.11      46     118 ..     305     378 ..     297     401 .. 0.74

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 3.5
                 HHHHHSCTS-CC.CHHHHHHHHHTCCH CS
  PF00579.20 219 kkiqkavtdsde.evekllklktelsn 244
                 +  q++++d+ +  v+k++ ++ +++ 
  MMETSP0890-20130614|1860_1 225 DITQRFMQDPIRiLVKKDELTLEGIKQ 251
                 677889999999888888777777766 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 6.3e-05
                 HHHCCTTTT..SSHHHHHHHHHHHHHHHHHHHHHHCHCTTCEEEEGGGSTTCH.CHHHHHHHCCC--BHCTSTTS CS
  PF00579.20  46 ltAligdps.kaeerklrkreeelenaikaqlakgldpekaeivlnsdwlekl.elaellrdlgklgelnrmlqf 118
                 +++ +++++ +  +r++r+ + ++  + +++la+g+d +++++v+n d + +  +++  + + g++g+ + +++f
  MMETSP0890-20130614|1860_1 305 MHGDMDQKErDIIMREFRSGSSRVLIT-TDLLARGIDVQQVSLVINYDLPTNReNYIHRIGRSGRFGRKGVAINF 378
                 333334444444567777777777776.99*******************98765899999888888876666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:00.72
# Mc/sec: 1361.26
//
Query:       MMETSP0890-20130614|1861_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-42  144.1   0.0      1e-40  138.8   0.0    2.4  2  PF00270.24 DEAD/DEAH box helicase
    1.6e-27   95.0   0.0    3.6e-27   93.9   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain
    2.8e-06   27.1   0.9    0.00016   21.4   0.0    2.4  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.078   12.9   0.2       0.65    9.9   0.1    2.5  1  PF13401.1  AAA domain
       0.14   10.3   0.0       0.13   10.3   0.0    1.1  1  PF03547.13 Membrane transport protein
        0.2   10.7   5.1       0.87    8.6   3.5    2.0  1  PF07517.9  SecA DEAD-like domain
        6.3    6.0  20.3         10    5.3  14.1    1.3  1  PF09756.4  DDRGK domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.0   5.3e-44     1e-40       1     172 [.     130     307 ..     130     308 .. 0.90
   2 ?    2.6   0.0     0.037        73      65     106 ..     390     434 ..     384     443 .. 0.85

  Alignments for each domain:
  == domain 1    score: 138.8 bits;  conditional E-value: 5.3e-44
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTS.........EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttik.........kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 172
                 tpiQa+++p++ +g+d ++ aeTGsGKTl f+ p+l +l ++ + ++ k         +++ ++PtreLa+q ++ + +f+   ++ + + +gg + +rdq+  + + + ++++Tpgrlddlv++++l+ls v +lVlDEadr+l++gf + ++ +  +++  +++ ++++SAT+p +v+k
  MMETSP0890-20130614|1861_1 130 TPIQAQCWPILATGRDAVAIAETGSGKTLGFAAPALLRLSKETDTSN-KklggkniptRFVALCPTRELAQQSFEVVGEFATIFQVACGVAYGGIN-KRDQRAAI-GACAVLIATPGRLDDLVQSKELDLSAVDFLVLDEADRMLDMGFLQVVRGLAAACQPCEKRITCMFSATWPAEVRK 307
                 89*******999************************99988766222.2467777777*************************99***********.55999888.77*****************999***************************999865555566*********88876 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.037
                 HHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH...T..-SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
  PF00270.24  65 lnnlkkfkkypklrvlliiggvalardqlsvl...dngvdivvgT 106
                 + +l++f++  +  +++i+g++++a++++s+    +++v ++v+T
  MMETSP0890-20130614|1861_1 390 CARLERFLNDRGWDCAAIHGDMSQANRTKSFDafkSGQVPLLVAT 434
                 5688999999999**********9977776668999999999999 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   1.8e-30   3.6e-27       2      78 .]     396     472 ..     395     472 .. 0.98

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 1.8e-30
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +l+++g  +a++hg+++q +r++ ++ f++g+ + lvat+va+rG+d+pdv++Vin+++p +v+++++r+GRtgRag
  MMETSP0890-20130614|1861_1 396 FLNDRGWDCAAIHGDMSQANRTKSFDAFKSGQVPLLVATDVAARGLDIPDVSLVINYSFPLTVEDLVHRVGRTGRAG 472
                 89*************************************************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.6      0.19   3.7e+02      62     110 ..      20      68 ..       6     100 .. 0.59
   2 !   21.4   0.0   8.2e-08   0.00016      27     182 ..     145     301 ..     105     303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.19
  PF04851.10  62 lleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkk 110
                 ll++al++  +++++k++++ k+ +++kk+k   ee ++s+++  kk++
  MMETSP0890-20130614|1861_1  20 LLKKALRTEAEMKKDKKKISAKDEKKKKKKKRKREEDEESNSNAVKKTQ 68 
                 5555554444555555555555555444444444443333333333222 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 8.2e-08
  PF04851.10  27 rglivmaTGtGKTlvaas.liarlar................kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile........fkkafllglTATp 182
                  ++  ++TG+GKTl  a+ +++rl +                +f+ l+p++el +q  e       ++ ++++  ++va+ +         +k+ ++     + ++++t  +l   ++           s+e  l + d+++ DEa r+ ++  + ++++        ++k +   ++AT+
  MMETSP0890-20130614|1861_1 145 DAVAIAETGSGKTLGFAApALLRLSKetdtsnkklggkniptRFVALCPTRELAQQSFEVV----GEFATIFQVACGVAYGG--------INKRDQRAAIGACAVLIATPGRLDDLVQ-----------SKELDLSAVDFLVLDEADRMLDMG-FLQVVRglaaacqpCEKRITCMFSATW 301
                 5677899*******9998678888889999**************************99888....55566666666666665........4444455566779999********9986...........467788899**************9.888888888888889999999999997 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00034      0.65      10     122 ..     149     298 ..     141     327 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00034
   PF13401.1  10 tGesGvGKTtllrrlarq.ldeeaeaae........karvvfveapast..spkellqkllsalglpakg.......................rltteellealqealrrrrtrlliiDEaqr.Lseealeelrslldd....etgvklvlv 122
                 ++e+G+GKT+     a   l +e  + +        ++r+v   ++ +    + e+  +++  +++ +                         +++ ++l++   + l+  ++++l++DEa+r L +  l  +r l+ +    e+ ++  ++
  MMETSP0890-20130614|1861_1 149 IAETGSGKTLGFAAPALLrLSKETDTSNkklggkniPTRFVALCPTRELaqQSFEVVGEFATIFQVACGVaygginkrdqraaigacavliatPGRLDDLVQS--KELDLSAVDFLVLDEADRmLDMGFLQVVRGLAAAcqpcEKRITCMFS 298
                 5677777776444333320222222222667666442222222222222232333355555555554444666555444444444444443333344444422..2344444499********77899999999987766666666655555 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.9e-05      0.13     168     229 ..      10     121 ..       2     464 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.9e-05
  PF03547.13 168 ikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs..stprpsnltnaeiyslq................................................m 229
                  ++ds + +   ++al+te+e+k+d+k  ++  + ++++++      ++++sn + + ++s++                                                 
  MMETSP0890-20130614|1861_1  10 SEKDSRKAAKLLKKALRTEAEMKKDKKKISAKDEKKKKKKKRKReeDEESNSNAVKKTQKSSDdgmiaarsakveewqalhkvtvddkafvpcmtwsestafvgkafteycA 121
                 467777777778889*********9998887655555544444446889999999999999988888888888888887777777777777775555555555555555550 PP

>> PF07517.9  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.5   0.00045      0.87       9     114 ..      10     167 ..       2     272 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00045
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07517.9   9 serelkklqkiveeineleeelkklsdeeLrekteelkerlkeg................eslde........................................llpeafavvreaakrtlgmrhydvQllgglvlheGkiaemkTGeGKtlvatlpavln 114
                 se++ +k  k++++  ++e+e+kk +++++++k e+ k++ k++                +   +                                        ++ +af+     +k+    ++ + Q    l+  +  +a  +TG GKtl  + pa+l 
  MMETSP0890-20130614|1861_1  10 SEKDSRKAAKLLKKALRTEAEMKK-DKKKISAKDEKKKKKKKRKreedeesnsnavkktqK---SsddgmiaarsakveewqalhkvtvddkafvpcmtwsestaFVGKAFTEYCAKTKKWEAPTPIQAQCWPILATGRDAVAIAETGSGKTLGFAAPALLR 167
                 456666666666666665555554.344455554444444433322222334444444440...044444444444444444444444444444444432222223444443333333333334555555555566666679999********999999874 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  14.1    0.0053        10       4      74 ..       2      73 ..       1     104 [. 0.62

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0053
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF09756.4  4 gekkakkleekearkqqreaeeeereerkkkeekrekerkee.eekeeekekkkeeeerkeeeekerkeqee 74
                ++k+++kl ek+ rk+++ ++++ r e + k++k++   k+e ++k++++++++ ee +++  +k +k +++
  MMETSP0890-20130614|1861_1  2 KTKREEKLSEKDSRKAAKLLKKALRTEAEMKKDKKKISAKDEkKKKKKKRKREEDEESNSNAVKKTQKSSDD 73
                678899999999999999999998887776665554444444034444444444444444444555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1802  (0.131802); expected 273.4 (0.02)
Passed bias filter:                      696  (0.050907); expected 273.4 (0.02)
Passed Vit filter:                       153  (0.0111908); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.34u 0.45s 00:00:01.79 Elapsed: 00:00:01.03
# Mc/sec: 1277.28
//
Query:       MMETSP0890-20130614|1856_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-67  226.9   0.0    2.5e-67  226.6   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    1.5e-08   33.7   0.0    2.5e-08   33.0   0.0    1.3  1  PF04321.12 RmlD substrate binding domain
  ------ inclusion threshold ------
      0.011   14.5   0.0      0.016   14.0   0.0    1.3  1  PF02719.10 Polysaccharide biosynthesis protein
      0.026   14.3   0.0      0.048   13.5   0.0    1.4  1  PF13950.1  UDP-glucose 4-epimerase C-term subunit


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.6   0.0   7.5e-71   2.5e-67       1     235 [.      17     263 ..      17     264 .. 0.95

  Alignments for each domain:
  == domain 1    score: 226.6 bits;  conditional E-value: 7.5e-71
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH............TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT....EEEEEEEGGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---S.EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri............rvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagv...krflfasSsevygkdaeqpikEetplgplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegee.vtllgdGtqlRdflyveDvaealllvlehgdvageiyni 235
                 +l+tG+tG++Gs+l+e ll kgyev+ lirr+  +s++t r             r+ l+++dltd+++l +++ + +pd++++l+a+s+v+ s+e  +++++ +  gtl+ll+a+r ag     rf++as+se+ygk++  p +E+tp++p+spY++aK+++++++ +y+e+yg++ ++++lfn+++pr++ ++v+++i++++ +i+e+++ ++ lg+++++Rd+++++D++e+++l++++++  ++++++
  MMETSP0890-20130614|1856_1  17 ALITGITGQDGSYLTELLLGKGYEVHGLIRRS--SSFNTGRLehlyedphcetaRLFLHYGDLTDSSNLFHIVNDIKPDEIYNLGAMSHVKVSFEMSEYTADVDGTGTLRLLNAIRSAGLekkCRFYQASTSELYGKVQAIPQDETTPFYPRSPYGVAKQYAYWILINYREAYGMHLTNGILFNHESPRRGATFVTRKITRAVVRIKEKQQeCLFLGNLDAQRDWGHARDYVEGMWLMVQKDE--PDDFVL 263
                 59**********************55555555..5666766677************************************************************************99999999**************77777*****************************************************************9999*******************************..998876 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.2e-12   2.5e-08       2     129 ..      16     173 ..      15     181 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7.2e-12
                 EEEEE--------HHHHHH----EEEEE--TT..........................T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH--....-EEEEEEEGGG-----SS-B-TTS-----S----TT CS
  PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre..........................eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavg....allihiSTdyVFdGekkrpYeeddetaPlnvYGrtK 129
                 + l+tG +Gq G+ L++ l  +g+ev+ l r+                            dltd++++ ++v+++kpd ++n++A   v    + +e ++ v  +g+ +l +a +++g     ++ + ST   +   ++ p  e+ +  P++ YG +K
  MMETSP0890-20130614|1856_1  16 KALITGITGQDGSYLTELLLGKGYEVHGLIRRsssfntgrlehlyedphcetarlflhYGDLTDSSNLFHIVNDIKPDEIYNLGAMSHVKVSFEMSEYTADVDGTGTLRLLNAIRSAGlekkCRFYQASTSELYGKVQAIPQDETTPFYPRSPYGVAK 173
                 579**************************66669***********************99**************************************************9999987762222579*********999******************998 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.6e-06     0.016       2     120 ..      18     134 ..      17     145 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.6e-06
  PF02719.10   2 lvtGagGsiGselvrqilkkkpkkiill.erdElklyeieke.leeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagv 120
                 l+tG +G  Gs l++ +l k  +   l+  ++ ++  ++e+  +  ++++ +l  +     gd++d+++l ++++++k+d +++  A+ hV +  e    + +   +gt  +++a  +ag 
  MMETSP0890-20130614|1856_1  18 LITGITGQDGSYLTELLLGKGYEVHGLIrRSSSFNTGRLEHLyEDPHCETARL--F--LHYGDLTDSSNLFHIVNDIKPDEIYNLGAMSHVKVSFEMSEYTADVDGTGTLRLLNAIRSAGL 134
                 89*************99999666555540455677777877633334444444..3..579******************************987666666666677777777777666665 PP

>> PF13950.1  UDP-glucose 4-epimerase C-term subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.048       7      49 ..     308     350 ..     302     354 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
   PF13950.1   7 gkkipyeiverRpGDvaecyAdpskAekeLgWkaersleemcr 49 
                 g  i++  +  Rp+ v  ++ +p+kA++ LgW ++ + ++  +
  MMETSP0890-20130614|1856_1 308 GPIIKVDPAYFRPTEVDLLVGSPAKAKRILGWVPKTTFKQLAE 350
                 5566777777899**********************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1185.23
//
Query:       MMETSP0890-20130614|1862_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.4   0.3       0.14   11.7   0.2    1.2  1  PF02120.11 Flagellar hook-length control protein FliK
       0.14   11.5   0.3       0.51    9.6   0.1    1.8  2  PF13728.1  F plasmid transfer operon protein
       0.33   10.4   3.3        0.9    9.0   2.3    1.8  1  PF08858.5  IDEAL domain


Domain annotation for each model (and alignments):
>> PF02120.11  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   3.1e-05      0.14      34      67 ..     113     146 ..     111     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.1e-05
  PF02120.11  34 dgdqlsvrltaenpetrelLeqnlprLreaLaea 67 
                 +++ ls+ + +  +++r++L++ ++ L++ L ea
  MMETSP0890-20130614|1862_1 113 QANDLSAFFDTPEEQARARLQRRRENLKRKLDEA 146
                 778999*************************985 PP

>> PF13728.1  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15   6.7e+02     174     196 ..      37      59 ..      23      74 .. 0.61
   2 ?    9.6   0.1   0.00011      0.51      25      61 ..     124     160 ..     108     165 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.15
   PF13728.1 174 gqaqklgvkttPalvlvdpktkk 196
                 + ++kl+ +++Pa  l +p+  k
  MMETSP0890-20130614|1862_1  37 EVIAKLRHEEFPAEALENPQGPK 59 
                 44555555555555555555433 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00011
   PF13728.1  25 qepsateqleelrkeleelkakAilnPteenveaylr 61 
                 +e++a+++l+  r++l++ +++Ai++ +e+n+e++++
  MMETSP0890-20130614|1862_1 124 PEEQARARLQRRRENLKRKLDEAIQRGDEANAEKFFK 160
                 456778999************************9985 PP

>> PF08858.5  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.3    0.0002       0.9       6      28 ..     131     153 ..     126     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0002
   PF08858.5   6 laefrkekLlelIDlALdtrDke 28 
                  +++r+e L+++ D+A +++D++
  MMETSP0890-20130614|1862_1 131 RLQRRRENLKRKLDEAIQRGDEA 153
                 5689*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       697  (0.0509801); expected 273.4 (0.02)
Passed bias filter:                      570  (0.041691); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.44s 00:00:00.94 Elapsed: 00:00:00.85
# Mc/sec: 501.83
//
Query:       MMETSP0890-20130614|1865_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-119  397.5   0.0    1.4e-58  198.2   0.0    2.1  2  PF02374.10 Anion-transporting ATPase
    2.3e-24   85.7  10.5    5.5e-13   48.6   0.2    2.8  2  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    2.5e-11   43.6   1.8    0.00011   22.0   0.0    3.8  2  PF13614.1  AAA domain
    6.3e-11   41.9   1.8    6.5e-07   28.8   0.1    2.4  2  PF12846.2  AAA-like domain
    1.3e-10   40.8   0.1    3.6e-05   22.9   0.0    3.1  3  PF00142.13 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
    1.1e-07   31.2   1.7      0.012   14.9   0.0    3.0  3  PF01695.12 IstB-like ATP binding protein
    2.2e-07   30.3   7.0     0.0045   16.3   0.2    4.7  5  PF13481.1  AAA domain
    1.9e-06   26.7   2.2     0.0074   14.9   0.1    2.3  2  PF03308.11 ArgK protein
    4.9e-06   25.7   0.6       0.05   12.5   0.3    2.9  3  PF09140.6  ATPase MipZ
    8.4e-06   25.0   0.2       0.12   11.4   0.0    2.6  2  PF02562.11 PhoH-like protein
    1.2e-05   24.6   2.1     0.0098   15.1   0.0    2.9  3  PF06564.7  YhjQ protein
    1.3e-05   25.5   6.2      0.016   15.4   2.6    3.1  2  PF13191.1  AAA ATPase domain
    1.6e-05   24.3   7.4      0.061   12.6   0.5    3.8  4  PF00448.17 SRP54-type protein, GTPase domain
    3.1e-05   23.4   3.8      0.022   14.4   0.1    4.0  3  PF13245.1  Part of AAA domain
    0.00024   19.7   1.3        1.3    7.4   0.0    3.4  3  PF07755.6  Protein of unknown function (DUF1611)
    0.00028   19.9   0.1       0.22   10.4   0.0    3.0  2  PF06745.8  KaiC
     0.0011   17.8   3.8      0.038   12.7   0.0    2.4  2  PF00931.17 NB-ARC domain
     0.0013   17.7   1.9       0.26   10.2   0.0    3.0  4  PF06414.7  Zeta toxin
     0.0051   17.4   0.1       0.44   11.2   0.0    2.9  2  PF13207.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.2   1.7        3.1    7.2   0.2    2.6  2  PF13604.1  AAA domain
      0.016   14.8   2.2        2.3    7.8   0.1    2.5  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.016   15.1   1.9        2.6    8.0   0.0    3.9  4  PF13401.1  AAA domain
       0.03   13.3   1.5       0.39    9.7   0.0    2.5  2  PF03193.11 Protein of unknown function, DUF258
      0.033   14.3   0.4        4.4    7.5   0.0    3.4  3  PF13238.1  AAA domain
      0.043   13.2   4.1        2.3    7.5   0.2    3.0  3  PF03029.12 Conserved hypothetical ATP binding protein
      0.049   13.1   5.1       0.36   10.2   0.4    2.7  2  PF05729.7  NACHT domain
       0.09   12.3   0.5         13    5.2   0.0    2.6  2  PF01583.15 Adenylylsulphate kinase
      0.094   12.4   0.0       0.89    9.3   0.0    2.6  2  PF13671.1  AAA domain
       0.11   11.2   0.5        1.4    7.6   0.0    2.4  3  PF05970.9  PIF1-like helicase
       0.13   12.3   0.1        4.4    7.4   0.0    2.4  2  PF00910.17 RNA helicase
       0.16   11.0   0.3          3    6.8   0.0    2.3  2  PF08433.5  Chromatin associated protein KTI12
       0.26   10.2   2.0       0.91    8.4   0.0    2.2  2  PF06418.9  CTP synthase N-terminus
       0.39   10.1   6.6        1.3    8.4   0.7    3.0  2  PF13479.1  AAA domain
       0.81   10.0   2.7          9    6.7   0.0    2.6  2  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF02374.10  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   5.9e-61   2.4e-58       1     299 [.      28     346 ..      28     351 .. 0.82
   2 !  198.2   0.0   3.5e-61   1.4e-58       3     299 ..     369     682 ..     367     688 .. 0.83

  Alignments for each domain:
  == domain 1    score: 197.4 bits;  conditional E-value: 5.9e-61
                 -CEEEE--------HHHHHHHHHHHHHTTS-EEEEE--TT-HHHHHHTS.....------EEE.E--TTEEEEE--HH............HHHHCHH--------------HHHHHHHHHTT--.....---HHHHHHHHHHHHHHC--SSEEEEE------CHHHHHHHHHHHHHHHHHHHHHHH---HCCCCTT.S----TCC-..HHHHHHHHHHHHHHHHHHHHT-TTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-GCC-STSHHHHHHHHHHHHHHHHHHHHTTTSE....EEEEE--.SS-----HHHHHH CS
  PF02374.10   1 lkviffgGKGGVGKttvsaatavklseqgkkvllvstDPAhslsdsfdq.....kigkeptkv.kgvenLsavEidpq............eeleearqevvkeeeavlgleeledvlaeelasl.....pgideiasfdellklvkeeeydvvifDtAPTGhtlrlLslpevleklleklvklknklsplakqlvk.lglgavsle..ealeeleetkeqikkveeilsdpertsfvlVvipeklslkEteRaikeLakygikvdavivNkvlpeeeqeckflearkeiqkkylkeieekfedlp....vvklpll.eeevvGlealekl 299
                 +k++f+gGKGGVGKt+ s+a++++l+e g+kvl+vstDPAhs+ d++       k + ept v ++v+ L+a+E+d +                    + + +   +l +e  ++v  +el++l     pgide++ ++++lk+   +eyd +i+DtAPTGh+lrlL lpe  + +l+ l+ lk+ + +la++  + lg+gav  +  +al +l++++ ++ +v++ l++++   f++V+ p  l+  EteR++++L++  i   ++ivNkv     ++   ++   ++q++ ++e+++kf+++p    v+++p++ ++e+vG +al+ l
  MMETSP0890-20130614|1865_1  28 TKFVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHSVIDALLAedrphKSSGEPTEVySEVPCLYAMEVDTElamdswrdaldaL-----DVASIGKRYGSLAAEAAKGVGLSELKALasnppPGIDELVGLAQVLKYR--DEYDRIIIDTAPTGHALRLLALPEFGKTFLDSLYALKDSVAKLANMAGGaLGTGAVAQDidRALIKLDQVRTKVTQVRALLKNKDLVEFIAVALPTTLAALETERLVAHLESGII--RSLIVNKVCTSFTSS--QARLLAKNQRQCITELKNKFHQQPntlnVITVPFItDAELVGPDALRYL 346
                 689*******************************************977677888999999994579***********7777766444442.....2222223333344445555444444444344449*************96..58*******************************************9998887777665555*************************************************98766..579****99887775..66677789999*********98643333888886526899999998766 PP

  == domain 2    score: 198.2 bits;  conditional E-value: 3.5e-61
                 EEEE--------HHHHHHHHHHHHHTTS-EEEEE--TT-HHHHHHTS------EEEE--TTEEEEE--HHHHHHCHH-----------.....---HHHHHHHHHTT-----HHHHHHHHHHHHHHC--SSEEEEE------CHHHHHHHHHHHHHHHHHHHHHH..H---HCCCCTT...S----TCC-....HHHHHHHHHHHHHHHHHHHHT-TTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-GCC-ST.SHHHHHHHHHHHHHHHHHHHHTT..TSEEEEEE--SS-----HHHHHH CS
  PF02374.10   3 viffgGKGGVGKttvsaatavklseqgkkvllvstDPAhslsdsfdqkigkeptkvkgvenLsavEidpqeeleearqevvkeeeavl.....gleeledvlaeelaslpgideiasfdellklvkeeeydvvifDtAPTGhtlrlLslpevleklleklvklkn..klsplakqlvk...lglgavsle....ealeeleetkeqikkveeilsdpertsfvlVvipeklslkEteRaikeLakygikvdavivNkvlpeeeqe.ckflearkeiqkkylkeieekfe..dlpvvklplleeevvGlealekl 299
                 ++++gGKGGVGK+t++a +av  ++qg k++lvstDPAhs++d++  ++         ++nL ++Eid+++++ ea+q  ++++ + l      +++    ++  ++  pg+de++++ ++l+l++ ++ d+v++DtAPTGhtlrlL+lp+ l+++ +k++  +   k +pl+++  k   +++ +v++e    +  ++l + +++  ++++il dp+r+ f++V+ p+ ls+ Et R+ ++L+++gi  + ++vN+++++++++   f+++ +++q+ +l+++++  +  dl ++ +p +++++ G   l  l
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAHSIGDALALDVVSPGILTPVLPNLDILEIDADAAALEAKQLLADAAFTALenrnqDTTGIAALVDALETPPPGVDELVALLKVLDLLRDKNIDTVVLDTAPTGHTLRLLQLPDLLDEFADKAIAARTkiKANPLLRAALKavgVDISDVNMEnglaQDDDKLRDLQDRAFAMDAILHDPNRAEFIMVAAPNALSVAETLRLRSALQEQGIPHKRLLVNGLVDDNDDAiAAFANSLQHTQRSALTRLNSLAKsyDLRLTIVPQFDTDLTGRFGLMAL 682
                 689**********************************************9999999999***********8877777776666655552211144444555566666679**************************************************99888334468888776553356777777755544456677777888899******************************************************9999999**********999976542267777778777777776665555 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2   1.4e-15   5.5e-13       2     168 ..      31     300 ..      30     327 .. 0.73
   2 !   39.6   3.5     8e-13   3.2e-10       2     124 ..     370     555 ..     369     632 .. 0.72

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.4e-15
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx....................................................xxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................................xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01656.18   2 aiasgkGGvGKTtlaanLaralakrglrVlliDlDpqannssllgkv........seilkkgeekasal....................................................lenfeagllae...........geeglvesllkkalealikeayDvviiDtapglgel...........................................................vanalqaadll..vvviepekfsvegakrilellerlgkklkilgvvlnkvdrgnerhlee 168
                 ++++gkGGvGKT+++++++  la+rg +Vl + +Dp  +   +l+++        +                                                                 l                     g +      l+++l+   +++yD +iiDtap+ + l                                                           v++ l++ dl+  ++v+ p+ ++ + ++r++  le  g  + i + ++nkv ++  ++  +
  MMETSP0890-20130614|1865_1  31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHSVIDALLAEdrphkssgE------------PtevysevpclyamevdtelamdswrdaldaldvasigkrygslaaeaakgvgL---------SelkalasnpppGIDE--LVGLAQVLKY--RDEYDRIIIDTAPTGHALrllalpefgktfldslyalkdsvaklanmaggalgtgavaqdidralikldqvrtkvtqVRALLKNKDLVefIAVALPTTLAALETERLVAHLES-G--I-IRSLIVNKVCTSFTSSQAR 300
                 799**************************************999977444433331............033445677777677777777777778778877777777777666555444441.........1344344444442222..2348889999..556***********999999999999999999888888888888888888888888888888888888888888888888888888766688888888887777777777773.3..4.7788888886665555554 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 8e-13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxx...........................xxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxx RF
  PF01656.18   2 aiasgkGGvGKTtlaanLaralakrglrVlliDlDpqannssllgkv...................seilkkgeekasal...........................lenfeagllae.............geeglvesllkkalealikeayDvviiDtapglgel............................vanalqaadllvvvi 124
                  +++gkGGvGK+tlaa+La+a a++g++++l+ +Dp  +   +l+                                                                                      g        l k+l+ l+ ++ D v++Dtap+ ++l                            +++al+a+ + ++++
  MMETSP0890-20130614|1865_1 370 LVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAHSIGDALA-LdvvspgiltpvlpnldileI------------DadaaaleakqlladaaftalenrnqdtT---------GiaalvdaletpppGV--DELVALLKVLDLLRDKNIDTVVLDTAPTGHTLrllqlpdlldefadkaiaartkikanplLRAALKAVGVDISDV 555
                 699*********************************988877776.235676777666665554441............03333445555566666666443333330.........1344665443333322..22334889999999999**********999987777777777777777766666666666666666665555555 PP

>> PF13614.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.8e-07   0.00011       4     127 ..      31     179 ..      30     197 .. 0.81
   2 !   18.2   0.1     4e-06    0.0016       3      42 ..     369     408 ..     367     414 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.8e-07
   PF13614.1   4 gvySpvggegkttlAlnlaqslaenrkkvLlldleeysgslalflgleek............................fglsdllynkkqgkenlatkrldellsqlal....ngldllapprspedlselspeeveqLlerlke..rYdvvilDlgs 127
                 ++++ +gg+gkt+ + +++ +lae+++kvL+++ ++ ++    +l ++++                             ++ d+l  +  + +++  kr+ +l  ++a+    ++l+ la+++ p        +e+  L + lk    Yd++i+D+ +
  MMETSP0890-20130614|1865_1  31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHSVIDALLAEDRPhkssgeptevysevpclyamevdtelamDSWRDALDAL--DVASIG-KRYGSLAAEAAKgvglSELKALASNPPP------GIDELVGLAQVLKYrdEYDRIIIDTAP 179
                 6899***********************************9999998888888999999999999999999999888887777777777..334444.4888888877777766777777666666......567777888888888889999998876 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4e-06
   PF13614.1   3 igvySpvggegkttlAlnlaqslaenrkkvLlldleeysg 42 
                 + v++ +gg+gk+tlA++la++ a ++ k++l++ ++ ++
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAHS 408
                 679*****************************99998775 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00015     0.061       4      40 ..      31      69 ..      28      76 .. 0.92
   2 !   28.8   0.1   1.6e-09   6.5e-07       4     173 ..     370     542 ..     367     615 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
   PF12846.2  4 tlilGppGsGKSvllkklvlqllargprvvii..Dpgge 40
                +++ G+ G GK+++  ++ lql++rg +v+i+  Dp ++
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVstDPAHS 69
                7999****************************9999887 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 1.6e-09
   PF12846.2   4 tlilGppGsGKSvllkklvlqllargprvvii..Dpggeysglaralggqvidlgegkgis..lNPfdigpteagaekleaea..........dphsreldlllalletdselrnrpledeeeaalsralrelyeeegia........tlaqrqayPtlgdllealreeeeelaeealarderreaaeelal 173
                  ++ G+ G GKS+l+ +l+++ + +g + v +  Dp ++   + +al  +v+++g  +++   l++++i++   +a  lea++          ++ +++ + + al++   +l+++p++ +e +al ++l+   ++++i+        t ++ +    l+dll+ +++         +a+ + + +a++l++
  MMETSP0890-20130614|1865_1 370 LVVGGKGGVGKSTLAATLAVAKADQGFKTVLVstDPAHS---IGDALALDVVSPGILTPVLpnLDILEIDA---DAAALEAKQlladaaftalENRNQDTTGIAALVD---ALETPPPGVDELVALLKVLDL-LRDKNIDtvvldtapTGHTLRLLQ-LPDLLDEFADKA-------IAART-KIKANPLLR 542
                 678999********************99888889**888...555553367887777777788*****999...77777777778899**777666666666666999...********************5.555555525555433222222222.556666655555.......33333.223333333 PP

>> PF00142.13  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   8.9e-08   3.6e-05       4      43 ..      32      71 ..      29      80 .. 0.88
   2 !   13.6   0.0   6.4e-05     0.026       5      40 ..     372     407 ..     368     424 .. 0.87
   3 ?   -0.4   0.0       1.2   4.7e+02     173     230 ..     614     671 ..     585     678 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 8.9e-08
  PF00142.13  4 aiYGkGGiGksttsqnlaaalaemgkkvlivGCDPkaDst 43
                 + GkGG+Gk  ts+ +   lae+g+kvliv  DP +   
  MMETSP0890-20130614|1865_1 32 FVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHSVI 71
                567********************************88655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.4e-05
  PF00142.13   5 iYGkGGiGksttsqnlaaalaemgkkvlivGCDPka 40 
                 + GkGG+Gkst  + la+a a +g k ++v  DP +
  MMETSP0890-20130614|1865_1 372 VGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAH 407
                 67**********************888888999976 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.2
  PF00142.13 173 ggvrlgGliinsrkvdkekelieefaeklgtkllevvPrdnivrka.elrkktvieyae 230
                 +g+    l++n   vd++++ i +fa++l+    +++ r n + k+ +lr  +v ++++
  MMETSP0890-20130614|1865_1 614 QGIPHKRLLVNGL-VDDNDDAIAAFANSLQHTQRSALTRLNSLAKSyDLRLTIVPQFDT 671
                 4555666788855.9**************999888888888887653566666766665 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-05     0.012      50      84 ..      31      65 ..      23      83 .. 0.86
   2 !   14.0   0.1   5.3e-05     0.021      50      83 ..     370     403 ..     364     410 .. 0.89
   3 ?   -2.7   0.0       7.5     3e+03      74     111 ..     508     545 ..     503     548 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.9e-05
  PF01695.12 50 lvllGpsGvGKthlAialgveavraglsvlfvrle 84
                + + G  GvGKt   +a+g + +++g +vl v+++
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTD 65
                45678899*********************998875 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.3e-05
  PF01695.12  50 lvllGpsGvGKthlAialgveavraglsvlfvrl 83 
                 lv+ G  GvGK+ lA+ l+v+ +++g++++ v++
  MMETSP0890-20130614|1865_1 370 LVVGGKGGVGKSTLAATLAVAKADQGFKTVLVST 403
                 6888999*********************998877 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 7.5
  PF01695.12  74 aglsvlfvrledLveeLkrakgdgrleralkrlakvdl 111
                  g+  + ++l+dL++e + +   +r + +++ l+++ l
  MMETSP0890-20130614|1865_1 508 TGHTLRLLQLPDLLDEFADKAIAARTKIKANPLLRAAL 545
                 68899999999***999999999998888888877765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00027      0.11      34      81 ..      29      66 ..      19     121 .. 0.76
   2 ?    1.2   0.0      0.46   1.9e+02      21      49 ..     169     197 ..     154     216 .. 0.82
   3 !   16.3   0.2   1.1e-05    0.0045      34      59 ..     368     394 ..     360     414 .. 0.84
   4 ?    0.1   0.1      0.98   3.9e+02     131     151 ..     487     506 ..     431     512 .. 0.72
   5 ?   -1.4   0.0       2.9   1.1e+03     154     177 ..     622     646 ..     565     665 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00027
   PF13481.1 34 sltllaGapgtGKStlalqlaaava.tGepflgpvvpepgrVlylsaEd 81
                 ++++ G +g+GK++  +++++++a +Ge++l           ++s++ 
  MMETSP0890-20130614|1865_1 29 KFVFVGGKGGVGKTSTSCAIGLQLAeRGEKVL-----------IVSTDP 66
                478999*******************5555555...........444433 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.46
   PF13481.1  21 pldwlvkgllprgsltllaGapgtGKStl 49 
                 + d+++ +  p g+ + l + p  GK++l
  MMETSP0890-20130614|1865_1 169 EYDRIIIDTAPTGHALRLLALPEFGKTFL 197
                 44556667779999999**********98 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.1e-05
   PF13481.1  34 sltllaGapgtGKStlalqlaaava.t 59 
                 sl+++ G +g+GKStla+ la+a a +
  MMETSP0890-20130614|1865_1 368 SLLVVGGKGGVGKSTLAATLAVAKAdQ 394
                 7899*******************9943 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.98
   PF13481.1 131 erllaaieelegpdlvviDtl 151
                  ++l+++++ +++d vv+Dt+
  MMETSP0890-20130614|1865_1 487 LKVLDLLRD-KNIDTVVLDTA 506
                 367888888.88999999996 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 2.9
   PF13481.1 154 lvggdensnsdv.gaviaalerlak 177
                 lv+g +++n+d+ +a+++ l+++ +
  MMETSP0890-20130614|1865_1 622 LVNGLVDDNDDAiAAFANSLQHTQR 646
                 4555566666666777776666654 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.8e-05    0.0074      26      71 ..      25      70 ..      18      81 .. 0.88
   2 !   11.1   0.1   0.00027      0.11      30      69 ..     368     407 ..     350     416 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.8e-05
                ----EEE--B-------HHHHHH---HHHH----EEEEEE------ CS
  PF03308.11 26 aGralvvGltGvPGaGkstlveklikelrrrGkrvavlavDPsspf 71
                 G ++ v + G  G+Gk  +  +++ +l++rG++v +++ DP+ ++
  MMETSP0890-20130614|1865_1 25 RGGTKFVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHSV 70
                577889999*********************************8765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00027
                 EEE--B-------HHHHHH---HHHH----EEEEEE---- CS
  PF03308.11  30 lvvGltGvPGaGkstlveklikelrrrGkrvavlavDPss 69 
                   + + G  G+Gkstl   l+   +++G +  +++ DP+ 
  MMETSP0890-20130614|1865_1 368 SLLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAH 407
                 556678999*****************************85 PP

>> PF09140.6  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0008      0.32       3      47 ..      30      74 ..      28     118 .. 0.82
   2 ?   -3.0   0.0       6.6   2.7e+03      92     111 ..     163     182 ..     156     190 .. 0.72
   3 !   12.5   0.3   0.00013      0.05       4      38 ..     371     404 ..     368     409 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0008
   PF09140.6  3 ivlgnekGGsGksttavhvavaLlkkgakvaaiDlDlrqrtltry 47
                +v+   kGG Gk+ t+  + + L+++g kv  + +D   + +   
  MMETSP0890-20130614|1865_1 30 FVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHSVIDAL 74
                577889**************************9999877666555 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 6.6
   PF09140.6  92 vaeleaeaDfiviDtPGsds 111
                 v + + e+D i+iDt  + +
  MMETSP0890-20130614|1865_1 163 VLKYRDEYDRIIIDTAPTGH 182
                 44568899******965554 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 0.00013
   PF09140.6   4 vlgnekGGsGksttavhvavaLlkkgakvaaiDlD 38 
                 v+   kGG Gkst+a  +ava +++g+k + + +D
  MMETSP0890-20130614|1865_1 371 VV-GGKGGVGKSTLAATLAVAKADQGFKTVLVSTD 404
                 44.46***********************9999888 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0    0.0003      0.12      17      60 ..      26      69 ..      10      82 .. 0.80
   2 !   10.8   0.0   0.00047      0.19      20      66 ..     368     414 ..     359     422 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0003
  PF02562.11 17 kkndivfaiGpaGtGKTylavalavealkkkkvkriiltRpave 60
                   ++vf+ G+ G GKT  + a+++++ ++++   i+ t pa +
  MMETSP0890-20130614|1865_1 26 GGTKFVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHS 69
                37899*************************99999998888765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00047
  PF02562.11  20 divfaiGpaGtGKTylavalavealkkkkvkriiltRpaveageelG 66 
                 +++++ G+ G GK+ la +lav+   ++  + ++ t pa + g+ l 
  MMETSP0890-20130614|1865_1 368 SLLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAHSIGDALA 414
                 578899**********************9999999999999998875 PP

>> PF06564.7  YhjQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05    0.0098       6      40 ..      32      66 ..      28      71 .. 0.89
   2 ?   -2.2   0.0       4.7   1.9e+03     110     134 ..     344     368 ..     340     372 .. 0.79
   3 !    7.9   0.2    0.0039       1.6       4      40 ..     369     405 ..     366     417 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-05
   PF06564.7  6 LqGvrGGvGttsllaaLgwalqelgesvLviDlsP 40
                + G +GGvG+ts   a+g  l e ge+vL++   P
  MMETSP0890-20130614|1865_1 32 FVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDP 66
                56789*************************98777 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.7
   PF06564.7 110 qklkaseryrWvLlDlPagesaltr 134
                 + l +s + + +L DlP++++++++
  MMETSP0890-20130614|1865_1 344 RYLLTSTHLNAILTDLPSPQNQISS 368
                 56667889999*******9998865 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0039
   PF06564.7   4 laLqGvrGGvGttsllaaLgwalqelgesvLviDlsP 40 
                 l + G +GGvG+++l+a+L+ a   +g + +++   P
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDP 405
                 5567889***************999998877776655 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0031       1.2      21      85 ..      25      77 ..      21     159 .. 0.85
   2 !   15.4   2.6     4e-05     0.016      24     122 ..     365     491 ..     349     658 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0031
   PF13191.1 21 egsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqllte 85
                +g++ +++v G  G+GK+s   +     +  +l++ ++k+  + +++        +++++++ll e
  MMETSP0890-20130614|1865_1 25 RGGTkFVFVGGKGGVGKTSTSCA-----IGLQLAERGEKVLIVSTDP--------AHSVIDALLAE 77
                466679**************999.....8888888888888888886........66666666655 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4e-05
   PF13191.1  24 p...lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.................lpysaiiqa...........lrellrqlltelaaelggwreallaalgalipelegiiglqalvalld 122
                     ll+v G  G+GKS+L+ +la + +++++      +d +                    l   +  ++           +++ll+  +    ++  ++++ ++a+ +al+ +  g+++l al+++ld
  MMETSP0890-20130614|1865_1 365 QissLLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAHSIgdalaldvvspgiltpvL---PNLDIleidadaaaleAKQLLADAAFTALENRNQDTTGIAALVDALETPPPGVDELVALLKVLD 491
                 2333899***************88777777766666666666555766666655555443331...2222222233333333444444444444444444444444444445555555555555555555 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00026       0.1       4      38 ..      31      65 ..      28      69 .. 0.86
   2 ?   -0.9   0.0       2.1   8.3e+02      81      92 ..     167     178 ..     159     183 .. 0.82
   3 !   12.6   0.5   0.00015     0.061       4      38 ..     370     404 ..     367     410 .. 0.86
   4 ?   -0.0   0.0       1.1   4.6e+02      75      92 ..     489     506 ..     464     530 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00026
                EEEE-------TTTHHHHHHHHHHT---EEEEE-- CS
  PF00448.17  4 illvGlqGaGKTTtlaKLAallkkegkkvllvaaD 38
                + + G  G+GKT+t   +  +l ++g+kvl+v++D
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTD 65
                34446679**************************9 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.1
                 HTT-SEEEEE-- CS
  PF00448.17  81 eekidvvlvDTa 92 
                 ++++d +++DTa
  MMETSP0890-20130614|1865_1 167 RDEYDRIIIDTA 178
                 4579*******9 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 0.00015
                 EEEE-------TTTHHHHHHHHHHT---EEEEE-- CS
  PF00448.17   4 illvGlqGaGKTTtlaKLAallkkegkkvllvaaD 38 
                 +++ G  G+GK T +a LA    ++g k++lv++D
  MMETSP0890-20130614|1865_1 370 LVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTD 404
                 34446779**************************9 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 1.1
                 HHHHHHHTT-SEEEEE-- CS
  PF00448.17  75 avekakeekidvvlvDTa 92 
                  ++  ++++id+v++DTa
  MMETSP0890-20130614|1865_1 489 VLDLLRDKNIDTVVLDTA 506
                 55667889*********9 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   5.4e-05     0.022       7      51 ..      24      65 ..      19      80 .. 0.87
   2 ?    6.6   0.2     0.014       5.8      10      48 ..     367     401 ..     362     408 .. 0.73
   3 ?   -0.7   0.0       2.6   1.1e+03      18      58 ..     477     515 ..     475     522 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.4e-05
   PF13245.1  7 la.gnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvapt 51
                l+ g + + v G  G GKT t +ai  +l+++    g++vl+v+  
  MMETSP0890-20130614|1865_1 24 LRgGTKFVFVGGKGGVGKTSTSCAIGLQLAER----GEKVLIVSTD 65
                56677788889*******************88....*******865 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.014
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaallaarekpgrsvllv 48 
                 ++llvv G  G GK+t++a +++a +++    g + +lv
  MMETSP0890-20130614|1865_1 367 SSLLVVGGKGGVGKSTLAATLAVAKADQ----GFKTVLV 401
                 689999*********7777777665544....5555555 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 2.6
   PF13245.1  18 gPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrl 58 
                 +PG +   +++  + +ll  r+k+ +  vl  aptg  ++ l
  MMETSP0890-20130614|1865_1 477 PPGVDEL-VALLKVLDLL--RDKNiDTVVLDTAPTGHTLRLL 515
                 6777777.7888899999..7888887788889999988866 PP

>> PF07755.6  Protein of unknown function (DUF1611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0054       2.2     113     152 ..      29      67 ..       3      73 .. 0.76
   2 !    7.4   0.0    0.0034       1.3     112     152 ..     366     406 ..     351     421 .. 0.87
   3 ?    2.4   0.0      0.11        45      30      96 ..     495     558 ..     479     575 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0054
   PF07755.6 113 krvlvvGTDcavGKrtTaleleealkerGlkaafvaTGqt 152
                 k v+ vG    vGK +T+ ++  +l erG k+ +v+T+++
  MMETSP0890-20130614|1865_1  29 KFVF-VGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPA 67 
                 4444.555668**************************986 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0034
   PF07755.6 112 akrvlvvGTDcavGKrtTaleleealkerGlkaafvaTGqt 152
                    +lvvG    vGK t a +l+ a  ++G+k+ +v+T+++
  MMETSP0890-20130614|1865_1 366 ISSLLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPA 406
                 56789*********************************986 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.11
   PF07755.6  30 eagaevliiGiapeggalpeewredikeAleaGldvvsglherLsddpelaaaakkkgvkiiDvrkp 96 
                 +++ +++++ +ap g  l      d++++ + +   +   +++++ +p l+aa k+ gv i Dv  +
  MMETSP0890-20130614|1865_1 495 DKNIDTVVLDTAPTGHTLRLLQLPDLLDEFADK---AIAARTKIKANPLLRAALKAVGVDISDVNME 558
                 556777778888888888666666666555544...67789**********************9765 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.012         5      20      59 ..      29      67 ..      25      76 .. 0.88
   2 !   10.4   0.0   0.00056      0.22      22      58 ..     370     405 ..     363     505 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.012
   PF06745.8 20 rvvlitGepGtGKtifalqFlikgaeeygepgvfvtvees 59
                ++v + G+ G GKt  +    ++ ae+ ge++++v+++  
  MMETSP0890-20130614|1865_1 29 KFVFVGGKGGVGKTSTSCAIGLQLAER-GEKVLIVSTDPA 67
                578999*************99999999.********9854 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00056
   PF06745.8  22 vlitGepGtGKtifalqFlikgaeeygepgvfvtvee 58 
                   + G+ G GK+++a++ ++  a + g ++v+v+++ 
  MMETSP0890-20130614|1865_1 370 LVVGGKGGVGKSTLAATLAVAKADQ-GFKTVLVSTDP 405
                 456678899****************.********985 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.8     0.018       7.4      17      36 ..      26      45 ..      18      51 .. 0.84
   2 !   12.7   0.0   9.5e-05     0.038       3      39 ..     350     387 ..     348     399 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.018
                SSSEEEEEE-------HHHH CS
  PF00931.17 17 eelkvvglvGmgGvGKttla 36
                 + k+v++ G+gGvGKt ++
  MMETSP0890-20130614|1865_1 26 GGTKFVFVGGKGGVGKTSTS 45
                5789*************876 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHTTTSSSE.EEEEE-------HHHHHHH CS
  PF00931.17   3 kevekviekLleeeeelk.vvglvGmgGvGKttlakqv 39 
                 +++++++  L + ++++  ++ + G+gGvGK+tla+  
  MMETSP0890-20130614|1865_1 350 THLNAILTDLPSPQNQISsLLVVGGKGGVGKSTLAATL 387
                 789999999*9999666515666689********9864 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00065      0.26      17      52 ..      29      66 ..      22      87 .. 0.85
   2 ?   -3.4   0.0       9.7   3.9e+03      50     121 ..     234     252 ..     230     272 .. 0.55
   3 ?    5.6   0.1     0.017       6.8      14      40 ..     365     391 ..     353     405 .. 0.73
   4 ?   -2.6   0.0       5.6   2.3e+03     117     140 ..     577     605 ..     520     645 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00065
   PF06414.7 17 kavllgGqpGAGKtslaellleela..agnivridaDe 52
                k+v++gG  G GKts++ ++  +la  +++++++++D 
  MMETSP0890-20130614|1865_1 29 KFVFVGGKGGVGKTSTSCAIGLQLAerGEKVLIVSTDP 66
                78******************999998888999998885 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 9.7
   PF06414.7  50 aDelrkyhpayrelekkdpkeaseltqkdaselveklidralekgyniilegtlrspdkarkiarklkkagy 121
                  D+ r++  ++r+l k+                                                       
  MMETSP0890-20130614|1865_1 234 LDQVRTKVTQVRALLKN-----------------------------------------------------KD 252
                 55555555555555553.....................................................33 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.017
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleel 40 
                 +   ++++gG  G GK++la  l  + 
  MMETSP0890-20130614|1865_1 365 QISSLLVVGGKGGVGKSTLAATLAVAK 391
                 55567899***********99887654 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 5.6
   PF06414.7 117 k.....kagykvevvivavpkelSelgil 140
                 +     ++  + e ++va+p +lS   +l
  MMETSP0890-20130614|1865_1 577 AmdailHDPNRAEFIMVAAPNALSVAETL 605
                 13333344556677777777777766654 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.28   1.1e+02       2      20 ..      31      53 ..      30     123 .. 0.75
   2 !   11.2   0.0    0.0011      0.44       3      64 ..     371     447 ..     369     584 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.28
                E--B--TT---HHHHHHH....H CS
   PF13207.1  2 iaitGppGsGKsTlakeL....a 20
                +++ G  G+GK++ + ++    a
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIglqlA 53
                7899*********9988833333 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.0011
                 --B--TT---HHHHHHHHHHS...TEEE..EEGGG.B-........-GGGS-B--.---B--SSGGGB-HHHHHHHH CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl...glpv..lsldd.ll........reeglkeld.dgereskdadadllaaildgl 64 
                 ++ G  G+GKsTla  La +    g++   +s+d             + + + ++  ++++  ++dad+ a ++++l
  MMETSP0890-20130614|1865_1 371 VVGGKGGVGKSTLAATLAVAKadqGFKTvlVSTDPaHSigdalaldVVSPGILTPvLPNLDILEIDADAAALEAKQL 447
                 678999***********664223355532234444221232233342222222222333344444444444333333 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.012       4.9       5      54 ..      15      64 ..      12      78 .. 0.87
   2 ?    7.2   0.2    0.0078       3.1      20      53 ..     369     402 ..     364     419 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.012
   PF13604.1  5 eQkeaveavltsgdrvavvqGpAGtGKttvlkalrealeaagkrvvglAp 54
                +Q+e v   l  g +++ v G  G GKt++  a+   l+++g +v+++++
  MMETSP0890-20130614|1865_1 15 SQEESVGLELRGGTKFVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVST 64
                688888888889999***************************99998875 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0078
   PF13604.1  20 vavvqGpAGtGKttvlkalrealeaagkrvvglA 53 
                 + vv G  G GK+t+ ++l+ a +++g++ v+++
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVS 402
                 67888**********************6655544 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.017         7       3      39 ..      31      66 ..      29      73 .. 0.81
   2 ?    7.8   0.1    0.0056       2.3       4      38 ..     371     404 ..     368     409 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.017
                EEEE-------HHHHHHHHHHHHH-------EEE-SS CS
   PF03205.9  3 vavvGpkdsGKTtlieklvnklkergyrvavvkhldh 39
                v v G+ ++GKT++   +  +l erg +v  ++++d 
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVL-IVSTDP 66
                55667889*********************9.777665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0056
                 EEE-------HHHHHHHHHHHHH-------EEE-S CS
   PF03205.9   4 avvGpkdsGKTtlieklvnklkergyrvavvkhld 38 
                 +v G+ ++GK+tl+  l+    ++g + + ++++d
  MMETSP0890-20130614|1865_1 371 VVGGKGGVGKSTLAATLAVAKADQGFKTV-LVSTD 404
                 4446778**********999999999988.66665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.18        74       5      31 ..      29      55 ..      24      94 .. 0.78
   2 ?   -0.3   0.0       2.4   9.5e+02      62      62 ..     277     277 ..     184     357 .. 0.51
   3 ?    8.0   0.0    0.0066       2.6       5      37 ..     368     429 ..     364     506 .. 0.66
   4 ?   -2.0   0.0       7.7   3.1e+03      37      87 ..     587     645 ..     568     666 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.18
   PF13401.1  5 gilvvtGesGvGKTtllrrlarqldee 31
                ++++v G  GvGKT +   +  ql e+
  MMETSP0890-20130614|1865_1 29 KFVFVGGKGGVGKTSTSCAIGLQLAER 55
                67889999********99999998655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 2.4
   PF13401.1  62 l 62 
                 l
  MMETSP0890-20130614|1865_1 277 L 277
                 2 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0066
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaae.............................k 37 
                 ++lvv G  GvGK+tl+  la  +  + + +                              +
  MMETSP0890-20130614|1865_1 368 SLLVVGGKGGVGKSTLAATLAVAKADQGFKTVlvstdpahsigdalaldvvspgiltpvlpN 429
                 578999999*********99986544433332555555555555555555555555555555 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 7.7
   PF13401.1  37 karvvfveapast..spkel.lqkllsalglpakg......rltteellealqealrrrr 87 
                 +a+++ v ap+       +l l+  l++ g p+k+       +++++ ++a+++ l++++
  MMETSP0890-20130614|1865_1 587 RAEFIMVAAPNALsvAE-TLrLRSALQEQGIPHKRllvnglVDDNDDAIAAFANSLQHTQ 645
                 55555555555553222.223555555555555555555553333333334433333333 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.26   1.1e+02      35      51 ..      28      44 ..       5      64 .. 0.73
   2 ?    9.7   0.0   0.00096      0.39      36      58 ..     368     390 ..     343     418 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.26
                TSBEEEE-------HHH CS
  PF03193.11 35 dktsvlvGqSGvGKSsL 51
                 k++++ G+ GvGK+s 
  MMETSP0890-20130614|1865_1 28 TKFVFVGGKGGVGKTST 44
                3556666899****985 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00096
                 SBEEEE-------HHHHHHH--- CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpe 58 
                 ++ v+ G+ GvGKS+L  +l+  
  MMETSP0890-20130614|1865_1 368 SLLVVGGKGGVGKSTLAATLAVA 390
                 466888***********999764 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.34   1.4e+02       1      18 [.      31      48 ..      31      96 .. 0.81
   2 ?    7.5   0.0     0.011       4.4       2      41 ..     371     428 ..     370     475 .. 0.68
   3 ?   -0.8   0.0       3.9   1.6e+03      22      42 ..     545     568 ..     528     592 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.34
   PF13238.1  1 IlitGtpGvGKtTlakeL 18
                ++++G+ GvGKt+++ ++
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAI 48
                7899********987665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.011
   PF13238.1   2 litGtpGvGKtTlakeLaerl..................gdvlrdlakengleeevdd 41 
                 +++G+ GvGK+Tla  La                     gd l   + + g+ ++v +
  MMETSP0890-20130614|1865_1 371 VVGGKGGVGKSTLAATLAVAKadqgfktvlvstdpahsiGDALALDVVSPGILTPVLP 428
                 588999********99943322244555555555555555555555555555555555 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 3.9
   PF13238.1  22 l...gdvlrdlakengleeevddk 42 
                 l   g+ ++d++ engl  ++d+ 
  MMETSP0890-20130614|1865_1 545 LkavGVDISDVNMENGLAQDDDKL 568
                 24459999*********9999988 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1      0.02         8       2      37 ..      34      69 ..      33      73 .. 0.90
   2 ?    7.5   0.2    0.0058       2.3       2      36 ..     373     407 ..     371     411 .. 0.91
   3 ?   -2.8   0.0       8.3   3.3e+03     193     227 ..     565     603 ..     551     610 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.02
  PF03029.12  2 vGpaGsGKttfvgalseilelskrsvavvNLDPAae 37
                 G  G+GKt+   a+   l +++ +v +v  DPA +
  MMETSP0890-20130614|1865_1 34 GGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAHS 69
                5889******99999999999*************76 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0058
  PF03029.12   2 vGpaGsGKttfvgalseilelskrsvavvNLDPAa 36 
                  G  G+GK+t+  +l+    +++ +  +v  DPA 
  MMETSP0890-20130614|1865_1 373 GGKGGVGKSTLAATLAVAKADQGFKTVLVSTDPAH 407
                 47789****************************97 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 8.3
  PF03029.12 193 d.....lkklaesiaelleefalvlrflplsaekeesmee 227
                 d     l++ a ++ ++l+++++  +f++++a +  s+ e
  MMETSP0890-20130614|1865_1 565 DdklrdLQDRAFAMDAILHDPNRA-EFIMVAAPNALSVAE 603
                 345556778889999999999999.999999888777665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.071        28       3      28 ..      31      56 ..      29      64 .. 0.88
   2 ?   10.2   0.4    0.0009      0.36       2      27 ..     369     394 ..     368     402 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.071
   PF05729.7  3 vilqGeaGsGKTtLlqklasawakgk 28
                v++ G+ G+GKT   + +  ++a++ 
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIGLQLAERG 56
                8999************9999999876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0009
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawakg 27 
                 ++++ G+ G+GK+tL++ la+a a++
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKADQ 394
                 68999***************987765 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.033        13       4      39 ..      30      65 ..      27      82 .. 0.88
   2 ?    4.4   0.1     0.061        24       5      37 ..     370     402 ..     367     409 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.033
                EEEEE-ETT---HHHHHHHHHHHHCTS--EEEE--- CS
  PF01583.15  4 vvwltGlsgsGKstiavalekkLvekgikvylLdGd 39
                 v++ G  g GK++ ++a+  +L e+g kv ++  d
  MMETSP0890-20130614|1865_1 30 FVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTD 65
                58999**********************999877665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.061
                 EEEE-ETT---HHHHHHHHHHHHCTS--EEEE- CS
  PF01583.15   5 vwltGlsgsGKstiavalekkLvekgikvylLd 37 
                 + + G  g GKst+a +l+ +  ++g k++l+ 
  MMETSP0890-20130614|1865_1 370 LVVGGKGGVGKSTLAATLAVAKADQGFKTVLVS 402
                 5678999************99999999887765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.6   1.1e+03       2      32 ..      31      66 ..      30     101 .. 0.64
   2 ?    9.3   0.0    0.0022      0.89       1      34 [.     369     407 ..     369     476 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.6
   PF13671.1  2 vllvGlpGsGKstlaerl...lkklg..yvrlsqdt 32
                v++ G  G GK+  + ++   l+++g    ++s+d 
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIglqLAERGekVLIVSTDP 66
                78889999***9987665333333335566666665 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0022
   PF13671.1   1 lvllvGlpGsGKstlaerllkklg.....yvrlsqdtlr 34 
                 l+++ G  G GKstla  l+ +       +v++s+d ++
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKAdqgfkTVLVSTDPAH 407
                 57888999**********965554458889999999744 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0036       1.4      22      57 ..      28      63 ..      12      81 .. 0.88
   2 ?   -3.5   0.0       8.2   3.3e+03     227     276 ..     258     307 ..     249     320 .. 0.69
   3 ?    1.0   0.0      0.36   1.5e+02      18      50 ..     363     395 ..     350     404 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0036
   PF05970.9 22 gklfFvtGsgGtgKtylwkallkklrsegkivlavA 57
                 k++Fv G gG gKt    a+  +l  +g++vl v 
  MMETSP0890-20130614|1865_1 28 TKFVFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVS 63
                6899****************************9984 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 8.2
   PF05970.9 227 lieiPedlllkksedkieeivsevypdllqnltdeeyleerailaptnee 276
                 ++ +P+ l   ++e+ ++++ s ++ +l+ n   +++ +++a+l ++n+ 
  MMETSP0890-20130614|1865_1 258 AVALPTTLAALETERLVAHLESGIIRSLIVNKVCTSFTSSQARLLAKNQR 307
                 56777777777777777777777777777777788888888888888764 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.36
   PF05970.9  18 lnekgklfFvtGsgGtgKtylwkallkklrseg 50 
                 +n+ + l+ v G gG gK+ l  +l  +   +g
  MMETSP0890-20130614|1865_1 363 QNQISSLLVVGGKGGVGKSTLAATLAVAKADQG 395
                 5667788999***********999976655544 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.41   1.6e+02       2      25 ..      32      55 ..      30      77 .. 0.72
   2 ?    7.4   0.0     0.011       4.4       2      23 ..     371     392 ..     369     409 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.41
  PF00910.17  2 wlyGpsgeGKStlakeLakallkk 25
                ++ G+ g+GK++++  +  +l+++
  MMETSP0890-20130614|1865_1 32 FVGGKGGVGKTSTSCAIGLQLAER 55
                455666*******99998888854 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.011
  PF00910.17   2 wlyGpsgeGKStlakeLakall 23 
                 ++ G+ g+GKStla +La a +
  MMETSP0890-20130614|1865_1 371 VVGGKGGVGKSTLAATLAVAKA 392
                 445666**********987655 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.31   1.2e+02       4      41 ..      31      68 ..      29      86 .. 0.85
   2 ?    6.8   0.0    0.0075         3       3      39 ..     369     405 ..     368     412 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.31
   PF08433.5  4 vvltGlPssGKstvakeLakaleeegrsvvvisdeslg 41
                v + G   +GK+  +  +  +l+e+g +v ++s++  +
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTSTSCAIGLQLAERGEKVLIVSTDPAH 68
                567788899***********************988655 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0075
   PF08433.5   3 LvvltGlPssGKstvakeLakaleeegrsvvvisdes 39 
                 L+v+ G   +GKst+a++La a +++g + v++s++ 
  MMETSP0890-20130614|1865_1 369 LLVVGGKGGVGKSTLAATLAVAKADQGFKTVLVSTDP 405
                 899************************9999999875 PP

>> PF06418.9  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0023      0.91       1      41 [.      28      66 ..      28      77 .. 0.90
   2 ?    0.7   0.2       0.5     2e+02       5      41 ..     370     405 ..     367     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
   PF06418.9  1 tkyifvtGGvvsslGkGitaaslgallksrglkvtllklDP 41
                tk++fv G    ++Gk  t+ ++g  l +rg kv ++  DP
  MMETSP0890-20130614|1865_1 28 TKFVFVGG--KGGVGKTSTSCAIGLQLAERGEKVLIVSTDP 66
                68999977..58****************************9 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.5
   PF06418.9   5 fvtGGvvsslGkGitaaslgallksrglkvtllklDP 41 
                 +v GG   ++Gk ++aa+l++   ++g+k  l+  DP
  MMETSP0890-20130614|1865_1 370 LVVGG-KGGVGKSTLAATLAVAKADQGFKTVLVSTDP 405
                 56666.479***********************99999 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3      0.12        47       7      34 ..      32      67 ..      27     185 .. 0.57
   2 ?    8.4   0.7    0.0033       1.3       7      51 ..     371     428 ..     367     512 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.12
   PF13479.1  7 liYGkpGiGKTslaktl........pktlfldleag 34
                 + Gk G+GKTs+   +        +k+l+++++  
  MMETSP0890-20130614|1865_1 32 FVGGKGGVGKTSTSCAIglqlaergEKVLIVSTDPA 67
                5669999***99744332244555566666666665 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0033
   PF13479.1   7 liYGkpGiGKTslaktl........pktlfldleagakavkdlkrgdsvdvr......s 51 
                 ++ Gk G+GK++la+tl         kt++++++   +++ d+   d+v +       +
  MMETSP0890-20130614|1865_1 371 VVGGKGGVGKSTLAATLavakadqgFKTVLVSTDPA-HSIGDALALDVVSPGiltpvlP 428
                 6779************98876655557788888777.6666665555555555555552 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.0      0.75     3e+02       2      15 ..      31      44 ..      30      48 .. 0.92
   2 ?    6.7   0.0     0.022         9       3      25 ..     371     393 ..     369     442 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.75
   PF08477.8  2 vvvvGdkgvGKssl 15
                v+v G+ gvGK+s 
  MMETSP0890-20130614|1865_1 31 VFVGGKGGVGKTST 44
                7999********95 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.022
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp 25 
                 vv G+ gvGKs+l + l+  + +
  MMETSP0890-20130614|1865_1 371 VVGGKGGVGKSTLAATLAVAKAD 393
                 788999*******9999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.23u 0.42s 00:00:01.65 Elapsed: 00:00:01.18
# Mc/sec: 1399.23
//
Query:       MMETSP0890-20130614|1868_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   16.2   0.1     0.0053   15.6   0.0    1.4  1  PF12780.2 P-loop containing dynein motor region D4


Domain annotation for each model (and alignments):
>> PF12780.2  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-07    0.0053      56     114 ..      57     115 ..      47     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.8e-07
   PF12780.2  56 sldvfqitlrkgygipdlkldlaalclkagvknvntvflmtdaqvadekflvlindlla 114
                 ++d+f    ++g+ + +  +d+  +c +  v+ +++v+ +t++q +dek l  i d   
  MMETSP0890-20130614|1868_1  57 GVDIFVGERKQGFILAETFVDIVHVCPRPKVNAIKAVYNITETQSTDEKQLTWIHDQAI 115
                 6799999999********************************************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.59
# Mc/sec: 934.17
//
Query:       MMETSP0890-20130614|1867_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-50  172.4   0.0    4.7e-50  170.4   0.0    1.7  1  PF01992.11 ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> PF01992.11  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   3.5e-54   4.7e-50      65     318 ..       2     278 .]       1     278 [] 0.91

  Alignments for each domain:
  == domain 1    score: 170.4 bits;  conditional E-value: 3.5e-54
                 HHH---GGGG----HHHHHHHHHHHHHHHHHHHHHHHHH----GGGS--------.HHHHHHHHS....SS----HHHH..H----THHHHHHHHHH...H...........-..--HHHHHHHHHHHHHHHHHHHH-...----HHHHHHHHHHHHHHHHHHHHHT---.....---GGGT-...--------H.HHHHHHH---GGGGGS----TT-------S.......HHHHH---HHHHHH.HHC-----------HHHHHHHHHHHHHHHHH CS
  PF01992.11  65 aktyekliriapgslkkllelllkkydirNiktlirgklanrsaeevlelliplG.evfekmkel....aeaktieEvv.svLegtpyaevlqklls...e...........ldetnleiieetlykryyeellkaaksakgkeakilrefleleiDvrnikiiLrlkas.....glskdeikkllieggelaeekleklaraedveevlselegtaygealseaaeelegtslkalEraLdkvllekisklafvkplsvgpvlsYillkeqEvrnlra 318
                 +++++ l++ a+++l+++l++++++y+i+Ni +l++g++++r+++e++e+++plG ++  +m  +    + +k +++++ +vL +tp   +++++l    e           l+e+++eii++ l+k y+e+++k +++++g++a+i+ e+l++ +D r+i+i+L+++++      + + ++k l++  g l++++++kla+a d   + s+++  + + ++  + ++  ++   ++ +a+++ +++ + +laf +++++++ ++Yi+lkeqE+rnl +
  MMETSP0890-20130614|1867_1   2 VDEFKFLRAQADEPLSTFLDYITYEYMIDNIMLLLKGTISGRDINELMEQCHPLGlFQEATMRSIptfeHSPKGYADLYqTVLVDTPIGSYFAQFLAessEtigtagemrnvLEEVSMEIIKNSLVKLYLEDFFKLCQKIGGETAQIMGEILQARADQRAINITLNSFGTplnepSMRQTDRKRLYPSIGFLYPAGTDKLANAADEASLGSAIQPFPVYRDIWTVHQNESID-DRSIDDAFYEREVQ-MLELAFESQMHFAIYYAYIKLKEQEIRNLVW 278
                 899****************************************************99888888875556789***************9999999887444233344444445699*****************************************************9833333456799*********************************************998776.**************.99***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 965.49
//
Query:       MMETSP0890-20130614|1869_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-41  140.2   0.0    6.5e-41  139.5   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    7.3e-13   48.0   0.0    1.8e-12   46.8   0.0    1.7  1  PF04212.13 MIT (microtubule interacting and transport) domain
    5.6e-07   29.6   0.1    0.00024   21.1   0.0    2.8  2  PF13401.1  AAA domain
    6.8e-07   28.9   0.0    5.1e-06   26.1   0.0    2.3  2  PF09336.5  Vps4 C terminal oligomerisation domain
    2.2e-06   28.3   0.0    5.3e-06   27.1   0.0    1.7  1  PF13207.1  AAA domain
    5.6e-06   25.4   0.0    9.1e-06   24.7   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    7.2e-06   25.6   0.0    4.9e-05   22.9   0.0    2.2  1  PF07728.9  AAA domain (dynein-related subfamily)
    4.2e-05   22.9   0.0    7.4e-05   22.1   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
    5.2e-05   23.0   0.0    0.00011   22.0   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00019   21.2   0.0    0.00033   20.4   0.0    1.4  1  PF13173.1  AAA domain
    0.00022   21.5   0.1    0.00098   19.4   0.0    1.9  1  PF13191.1  AAA ATPase domain
    0.00027   20.2   2.0      0.043   13.0   0.1    3.0  4  PF13481.1  AAA domain
    0.00035   20.3   0.0    0.00084   19.1   0.0    1.7  1  PF13671.1  AAA domain
    0.00039   19.3   0.0    0.00066   18.5   0.0    1.3  1  PF05673.8  Protein of unknown function (DUF815)
     0.0011   17.7   0.0     0.0015   17.2   0.0    1.2  1  PF06068.8  TIP49 C-terminus
     0.0057   16.8   0.0      0.013   15.6   0.0    1.7  1  PF13238.1  AAA domain
     0.0075   16.3   0.0      0.022   14.8   0.0    1.8  1  PF00910.17 RNA helicase
     0.0089   15.1   0.0      0.014   14.5   0.0    1.4  1  PF12846.2  AAA-like domain
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.042   13.4   0.0    1.6  1  PF13245.1  Part of AAA domain
      0.018   14.0   0.0      0.037   13.0   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.033   13.1   0.1        3.5    6.5   0.0    2.2  2  PF06745.8  KaiC
      0.037   13.6   0.0       0.65    9.5   0.0    2.1  2  PF01637.13 Archaeal ATPase
       0.04   13.3   0.0       0.08   12.3   0.0    1.5  1  PF13479.1  AAA domain
      0.066   13.0   0.0       0.13   12.0   0.0    1.6  1  PF13521.1  AAA domain
       0.07   12.1   0.1       0.38    9.7   0.0    2.0  2  PF06414.7  Zeta toxin
        0.1   11.6   0.1       0.21   10.7   0.0    1.4  1  PF02562.11 PhoH-like protein
       0.11   11.8   0.0       0.37   10.1   0.0    1.9  1  PF00158.21 Sigma-54 interaction domain
       0.13   11.9   0.0       0.24   11.0   0.0    1.6  1  PF04851.10 Type III restriction enzyme, res subunit
       0.16   11.4   0.0       0.25   10.7   0.0    1.2  1  PF01443.13 Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.0   1.4e-43   6.5e-41       1     132 []     138     267 ..     138     267 .. 0.98

  Alignments for each domain:
  == domain 1    score: 139.5 bits;  conditional E-value: 1.4e-43
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHHTTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieiel 132
                 +llyGppGtGK+ lakava+e++++f+ +s s+l+sk++gese+ +++lf+ a+ ++ +si+fiDE+d+l++srs++es+ ++r+  ++l +++gv + ++ ++v+gatn p++ldpa++ +Rf+++i+i+l
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEADAKFFAVSSSDLVSKWQGESERLVKQLFSLARDEE-HSIIFIDEVDSLCGSRSEGESDATRRIKTEFLVAMQGVASTNDGLLVLGATNVPWELDPAIR-RRFEKRIYIPL 267
                 69****************************************************998.9*************************************************************.7*******985 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   3.8e-15   1.8e-12      22      67 ..       1      46 [.       1      48 [. 0.96

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 3.8e-15
                HHHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHHHHHHHHHHH CS
  PF04212.13 22 eeAlelYkeAlelLlqalkyepnperrealrqkieeylkrAeelke 67
                e+Al lYk Ale++++++kye+np+ r+ + q++e y+krAe+lk 
  MMETSP0890-20130614|1869_1  1 EKALGLYKRALEVFMTGVKYEKNPAARDTILQRVEGYMKRAEDLKG 46
                78******************************************95 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.1e-07   0.00024       7      98 ..     138     205 ..     133     247 .. 0.63
   2 ?   -2.1   0.0       7.2   3.4e+03      37      87 ..     271     324 ..     255     330 .. 0.60

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.1e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqr 98 
                 ++++G++G+GK++l++ +a ++d          + f+ +++s         l+s+ +       ++e+l+++l   +r++++ ++ iDE++ 
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEAD----------AKFFAVSSSD--------LVSKWQG------ESERLVKQLFSLARDEEHSIIFIDEVDS 205
                 799*****************764..........3344444443........3444442......2223444444444444444444444444 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 7.2
   PF13401.1  37 karvvfveapastspkellqkllsalglpakg...rltteell.ealqealrrrr 87 
                  ar+  +++  + +p++l+q+ ++a+ ++++g   + + + ++ eal e lr+++
  MMETSP0890-20130614|1869_1 271 AARARMIQLHLGDTPHTLAQQDFEAIADDTEGfsgS-DLSIVVrEALMEPLRKCQ 324
                 455556677777788888888888888777776632.333333366655555555 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.4   1.1e+03      35      51 ..      88     104 ..      85     108 .. 0.83
   2 !   26.1   0.0   1.1e-08   5.1e-06      11      57 ..     379     425 .]     374     425 .] 0.95

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.4
                 HHHHHHCS--SS-HHHH CS
   PF09336.5  35 flkalkttkptVskeDl 51 
                 + +a+ t+kp V  +D+
  MMETSP0890-20130614|1869_1  88 LASAIVTEKPNVKWSDV 104
                 568999******99997 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.1e-08
                 --EE--CCCS-GGGB----B-HHHHHHHHHCS--SS-HHHHHHHHHH CS
   PF09336.5  11 gAiemtwtdleeekllePpvtlkDflkalkttkptVskeDlekheeF 57 
                 +A+ m + d+++++l++P+++  Dfl +l++++ +V+ e l + +e+
  MMETSP0890-20130614|1869_1 379 KAFRMALYDVPSAQLKVPEISYDDFLHVLAKARKSVAPEELGRFVEW 425
                 799**************************************999998 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-08   5.3e-06       2      60 ..     138     197 ..     138     281 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.1e-08
                 E--B--TT---HHHHHHHHHHSTEEE..EEGGGB--GGGS-.B-----B--SSGGGB-HHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv..lslddllreeglk.elddgereskdadadllaai 60 
                 i+++GppG+GKs+lak++a + + +   +s +d  ++  +  e ++ + + +    d+ ++i
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEADAKFfaVSSSD--LVSKWQgESERLVKQLFSLARDEEHSI 197
                 899******************998865589999..667777333344433333333333333 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.9e-08   9.1e-06      50     114 ..     135     207 ..     128     260 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.9e-08
   PF05496.7  50 ldhvllyGpPGlGkttlakiiakelgvelk.vtsgPvlek....agdlaalltnl...eekdvlfideihrls 114
                    +llyGpPG Gk  lak +a+e ++++  v+s+ +++k    ++ l+  l +l   ee+ ++fide+  l 
  MMETSP0890-20130614|1869_1 135 WKGILLYGPPGTGKSFLAKAVATEADAKFFaVSSSDLVSKwqgeSERLVKQLFSLardEEHSIIFIDEVDSLC 207
                 5679***********************97615556666663222344666666664445788******98875 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     1e-07   4.9e-05       2      76 ..     138     205 ..     137     259 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1e-07
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEver 76 
                 +lL GppGtgKs+la+ +a    ++++ v      +++dl+ +++  ++ ++lv++ +   ar  e +i+++DEv+ 
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEADAKFFAV------SSSDLVSKWQ--GESERLVKQLFS-LARdeEHSIIFIDEVDS 205
                 89*************************87......6788999999..455555555444.56667999*******95 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-07   7.4e-05      48      89 ..     136     174 ..     127     214 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.6e-07
  PF01695.12  48 enlvllGpsGvGKthlAialgveavraglsvlfvrledLvee 89 
                 + ++l Gp+G+GK++lA a+++ea  +    + v+ +dLv++
  MMETSP0890-20130614|1869_1 136 KGILLYGPPGTGKSFLAKAVATEADAK---FFAVSSSDLVSK 174
                 5799****************9988444...333455555554 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.4e-07   0.00011       6      87 ..     138     214 ..     133     233 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.4e-07
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----.---- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essg 87 
                 ill gp g+Gk++laka+a   ++    k+  +  s+l    + e+e+lv++l        + ee+ i+++DE+d  + + ++ +
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEADA----KFFAVSSSDLVSkwQGESERLVKQLFS----LARDEEHSIIFIDEVDSLCGSrSEGE 214
                 899*******************95....666677777766456788888888775....6789************9998644444 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.1e-07   0.00033       5      73 ..     138     206 ..     135     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.1e-07
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe.llelflek.lkekkkylflDEiqev 73 
                 ++++Gp ++GK++l+k +a e     +++ ++  d   +   ++e l + ++++   e+++++f+DE+  +
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEAD--AKFFAVSSSDLVSKWQGESErLVKQLFSLaRDEEHSIIFIDEVDSL 206
                 789***************98888..888888888844433333335445555542455899******9876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.1e-06   0.00098      24      52 ..     134     164 ..     122     196 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.1e-06
   PF13191.1  24 p..lllvtGpsGiGKSsLlrelakpillerl 52 
                 p   +l++Gp+G+GKS L++++a+++ ++ +
  MMETSP0890-20130614|1869_1 134 PwkGILLYGPPGTGKSFLAKAVATEADAKFF 164
                 35579****************7776654444 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.7   2.2e+03     119     147 ..      20      48 ..       9      48 .. 0.74
   2 !   13.0   0.1   9.1e-05     0.043      36      55 ..     138     157 ..     134     165 .. 0.88
   3 ?    5.2   0.0     0.023        11     128     168 ..     181     220 ..     158     244 .. 0.74
   4 ?   -2.4   0.0       4.9   2.3e+03     109     143 ..     274     306 ..     254     311 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 4.7
   PF13481.1 119 ddrrdalltadlerllaaieelegpdlvv 147
                 ++++ a ++++l+r++ ++++ e+++ v+
  MMETSP0890-20130614|1869_1  20 YEKNPAARDTILQRVEGYMKRAEDLKGVI 48 
                 45556668899999999999999887765 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 9.1e-05
   PF13481.1  36 tllaGapgtGKStlalqlaa 55 
                 +ll+G+pgtGKS+la + a 
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVAT 157
                 589************98875 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.023
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsdvgav 168
                   +++l  ++++ e+ +++ iD +++l+g+ ++++sd+++ 
  MMETSP0890-20130614|1869_1 181 RLVKQLFSLARD-EEHSIIFIDEVDSLCGSRSEGESDATRR 220
                 567889999999.899**************88887776332 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 4.9
   PF13481.1 109 agvgslrltaddrrdalltadlerllaaieelegp 143
                 a++  ++l + d++++l ++d+e++++  e + g 
  MMETSP0890-20130614|1869_1 274 ARM--IQLHLGDTPHTLAQQDFEAIADDTEGFSGS 306
                 333..555566778888899999998887776655 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.8e-06   0.00084       2      40 ..     138     178 ..     138     232 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.8e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgt 40 
                 +ll G+pG+GKs+la++++ + +  ++ +s+ +l +++ g+
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEADakFFAVSSSDLVSKWQGE 178
                 6899***************9998887788888877777764 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.4e-06   0.00066      19     115 ..      93     202 ..      77     223 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.4e-06
   PF05673.8  19 veevdkvelddLvgiekqkeallent.......eqfl.kglpannvLLwGarGtGKSslvkallneyaeeg.....LrlievekedlkdlpkivellrerperfilfvDD 115
                 v+e  +v+++d+ g+e  k+al+e         + f+ k +p + +LL+G  GtGKS l ka+ +e  ++        l+   + + ++l k +  l++ +e+ i+f+D 
  MMETSP0890-20130614|1869_1  93 VTEKPNVKWSDVAGLEGAKAALKETIilpqkfpQLFVgKRKPWKGILLYGPPGTGKSFLAKAVATEADAKFfavssSDLVSKWQGESERLVKQLFSLARDEEHSIIFIDE 202
                 566777888888888888888877653332221233324568899*********************99988444444455555555566666666667778888888886 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.2e-06    0.0015      49     103 ..     134     186 ..      95     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.2e-06
   PF06068.8  49 aGravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                   +++Ll GppgtGk+ la a++ e   d +f a+s+s++ s     +e l+++l
  MMETSP0890-20130614|1869_1 134 PWKGILLYGPPGTGKSFLAKAVATEA--DAKFFAVSSSDLVSKWQGESERLVKQL 186
                 4599*******************996..588*********999888888887665 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-05     0.013       1      61 [.     138     197 ..     138     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedkldelld 61 
                 Il+ G+pG+GK+ lak+ a +  d  +  + +++l++ ++ ++++  ++ +   +++e+  
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATE-ADAKFFAVSSSDLVSKWQGESERLVKQLFSLARDEEHSI 197
                 89*****************99.688888888888888888885555555555555555444 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.6e-05     0.022       1      26 [.     138     163 ..     138     196 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.6e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 i+lyGp+g+GKS lak +a++   k+
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEADAKF 163
                 789**************998876555 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.9e-05     0.014       5      59 ..     139     193 ..     137     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.9e-05
   PF12846.2   5 lilGppGsGKSvllkklvlqllargprvviiDp....ggeysglaralggqvidlgegk 59 
                 l++GppG GKS+l+k+++ ++ a+   v   D     +ge+++l+++l    ++l +  
  MMETSP0890-20130614|1869_1 139 LLYGPPGTGKSFLAKAVATEADAKFFAVSSSDLvskwQGESERLVKQL----FSLARDE 193
                 799****************99998777777799777777777777777....4444444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     9e-05     0.042      12      34 ..     137     158 ..     130     171 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9e-05
   PF13245.1  12 llvvtGgPGtGKTttlaaiiaal 34 
                  +++ G+PGtGK+  la+++a  
  MMETSP0890-20130614|1869_1 137 GILLYGPPGTGKS-FLAKAVATE 158
                 55679********.888877754 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-05     0.037      25      43 ..     138     156 ..     135     168 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.9e-05
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 +ll+GppG+GK+ lak+++
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVA 156
                 89*************9976 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0073       3.5      22      38 ..     138     154 ..     123     163 .. 0.86
   2 ?    4.5   0.0     0.031        15      97     152 ..     176     235 ..     156     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0073
   PF06745.8  22 vlitGepGtGKtifalq 38 
                 +l++G pGtGK+++a+ 
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKA 154
                 89***********9975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.031
   PF06745.8  97 eedleelieklaeaikeikakrvviDsitgl....yeekeavaReilrqlvrvlkklgvT 152
                 + + e l+++l +  ++ + + + iD +++l     e +++ +R+i  +++  +++   T
  MMETSP0890-20130614|1869_1 176 QGESERLVKQLFSLARDEEHSIIFIDEVDSLcgsrSEGESDATRRIKTEFLVAMQGVAST 235
                 667899*************************98766777788999999999999887776 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0014      0.65      17      45 ..     132     160 ..     129     186 .. 0.82
   2 ?    1.4   0.0      0.42     2e+02     111     135 ..     187     210 ..     172     226 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0014
                 H..-SEEEEE--TT---HHHHHHHHHH-. CS
  PF01637.13  17 repnsiiviyGprrsGKTaLlkeileelk 45 
                 r+p++ i++yGp ++GK+ L k ++ e +
  MMETSP0890-20130614|1869_1 132 RKPWKGILLYGPPGTGKSFLAKAVATEAD 160
                 6778889***************9999884 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.42
                 HHHHH----EEEEEETGGGGG---- CS
  PF01637.13 111 ealkkkgkkiiiiiDElqklilgln 135
                   l ++++  ii iDE+  l  g++
  MMETSP0890-20130614|1869_1 187 FSLARDEEHSIIFIDEVDSLC-GSR 210
                 456666677999999998887.555 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.08       6      24 ..     138     159 ..     132     206 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00017
   PF13479.1   6 vliYGkpGiGKTslaktl...p 24 
                 +l+YG+pG+GK+ lak +    
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVateA 159
                 689************9875544 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00029      0.13       2      22 ..     138     158 ..     137     196 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00029
   PF13521.1   2 ivitGgpstGKTtlleaLaar 22 
                 i + G+p+tGK++l++a+a +
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATE 158
                 7899**************954 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0008      0.38      17      44 ..     136     162 ..     128     174 .. 0.82
   2 ?    0.0   0.0      0.72   3.4e+02      68      99 ..     168     199 ..     161     203 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0008
   PF06414.7  17 kavllgGqpGAGKtslaellleelaagn 44 
                 k +ll G+pG GK+ la+++  e+ + +
  MMETSP0890-20130614|1869_1 136 KGILLYGPPGTGKSFLAKAVATEA-DAK 162
                 5699****************9998.444 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.72
   PF06414.7  68 pkeaseltqkdaselveklidralekgyniil 99 
                 + ++++  q ++ +lv++l++ a ++  +ii+
  MMETSP0890-20130614|1869_1 168 SSDLVSKWQGESERLVKQLFSLARDEEHSIIF 199
                 56777788999****************99997 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00044      0.21      22      43 ..     138     159 ..     127     166 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00044
  PF02562.11  22 vfaiGpaGtGKTylavalavea 43 
                 +++ Gp GtGK++la a+a ea
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEA 159
                 5678*************99876 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00079      0.37      25      58 ..     138     168 ..     126     212 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00079
                 EEEE-------HHHHHHHHHTSTTTTS--EEEET CS
  PF00158.21  25 vlitGesGtGKellAraiheaskrkkkpfvavnc 58 
                 +l+ G  GtGK++lA+a+ ++    +++f av  
  MMETSP0890-20130614|1869_1 138 ILLYGPPGTGKSFLAKAVATEA---DAKFFAVSS 168
                 89**************997644...455666555 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00052      0.24      22      80 ..     124     189 ..      64     229 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00052
  PF04851.10  22 e........dekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleefkkfeskkief 80 
                          + +k +l+  + GtGK+++a +++++   kf f v + +l+++++ e ++  ++ +++
  MMETSP0890-20130614|1869_1 124 FpqlfvgkrKPWKGILLYGPPGTGKSFLAKAVATEADAKF-FAVSSSDLVSKWQGESERLVKQLFSL 189
                 35666666677999****************8666655565.788999******99884444443333 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00052      0.25       4      67 ..     141     203 ..     138     208 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00052
  PF01443.13   4 hGvpGcGKStlirkllrtltvnrptaelrtegk..pklpnlsvrtvdsflmalvkskgkililDEy 67 
                  G pG GKS l + ++ +       + +++ +   +k + +s r v+++ + + +++  i+++DE 
  MMETSP0890-20130614|1869_1 141 YGPPGTGKSFLAKAVATE---ADAKFFAVSSSDlvSKWQGESERLVKQLFSLARDEEHSIIFIDEV 203
                 688*************99...44446666666667777889999999999999999*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        89  (0.00650965); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.90
# Mc/sec: 1131.61
//
Query:       MMETSP0890-20130614|1871_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.91
# Mc/sec: 1432.55
//
Query:       MMETSP0890-20130614|1870_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.59
# Mc/sec: 625.49
//
Query:       MMETSP0890-20130614|1875_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   92.2   0.0    1.8e-26   91.9   0.0    1.1  1  PF01491.11 Frataxin-like domain
  ------ inclusion threshold ------
      0.092   12.2   0.2       0.17   11.4   0.0    1.5  2  PF13108.1  Protein of unknown function (DUF3969)


Domain annotation for each model (and alignments):
>> PF01491.11  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   2.6e-30   1.8e-26       3     103 ..      60     160 ..      58     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: 91.9 bits;  conditional E-value: 2.6e-30
  PF01491.11   3 dseyhkladellesleekleelaeeadadiDvelsggvltlef.enkgtivinkqepnkqiWlsspksgpkrfdldegeWidkrdgsellelLeeelseqlg 103
                 + ++h++ade+le++ +   +l++  d di+ el++gvl+++f ++++++vinkq+pn+qiW ssp+sgp rf+l+eg W ++rdg+ l+++L++el+ +l+
  MMETSP0890-20130614|1875_1  60 ELDFHAIADETLEAILNGAIALEDVYD-DIESELAAGVLKISFeSSRKSWVINKQTPNRQIWFSSPISGPCRFELEEGIWRHTRDGTILNDILKTELNLELE 160
                 678************999887766665.***************778999***********************************************998775 PP

>> PF13108.1  Protein of unknown function (DUF3969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.17      51      87 ..      68     104 ..      60     122 .. 0.86
   2 ?   -3.4   0.0         1   6.9e+03      60      76 ..     143     156 ..     141     160 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.4e-05
   PF13108.1  51 seeLieIIhkGmeLEDiesllpekLedtIddlktkcl 87 
                 +e L  I++ + +LED++++++++L   + ++ ++++
  MMETSP0890-20130614|1875_1  68 DETLEAILNGAIALEDVYDDIESELAAGVLKISFESS 104
                 889999********************99999988765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1
   PF13108.1  60 kGmeLEDiesllpekLe 76 
                 +G+ L+Di   l+++L+
  MMETSP0890-20130614|1875_1 143 DGTILNDI---LKTELN 156
                 56777777...455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.95
# Mc/sec: 416.21
//
Query:       MMETSP0890-20130614|1872_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-34  117.2  30.7    2.7e-10   39.6   0.2    6.5  8  PF13414.1  TPR repeat
    3.8e-34  114.7  12.6    3.5e-07   29.4   0.1    8.4  8  PF00515.23 Tetratricopeptide repeat
    3.1e-28   95.2  30.7    3.1e-07   29.7   0.2    9.2  9  PF07719.12 Tetratricopeptide repeat
    2.4e-24   84.6   5.8    8.6e-24   82.9   4.0    2.0  1  PF00226.26 DnaJ domain
    1.8e-21   76.1  35.9    2.2e-06   28.0   0.2    6.9  7  PF13432.1  Tetratricopeptide repeat
    9.6e-18   62.9  30.8     0.0011   19.2   0.2    8.2  7  PF13428.1  Tetratricopeptide repeat
      2e-15   55.2  16.5     0.0031   17.0   0.0    7.8  9  PF13181.1  Tetratricopeptide repeat
    5.1e-15   54.9  26.0    0.00035   20.2   0.9    6.9  7  PF13371.1  Tetratricopeptide repeat
    2.7e-13   49.5  25.0    3.6e-06   26.7   1.6    6.0  7  PF13424.1  Tetratricopeptide repeat
    1.3e-09   37.4  11.0     0.0039   17.1   0.0    7.3  6  PF13431.1  Tetratricopeptide repeat
      2e-09   36.3  12.0    0.00032   20.1   0.0    6.7  6  PF13176.1  Tetratricopeptide repeat
    9.7e-08   31.9  14.5    8.5e-05   22.5   1.1    5.1  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    8.6e-05   22.6  24.2       0.04   14.2   0.1    7.8  8  PF13174.1  Tetratricopeptide repeat
    0.00039   20.0   0.7     0.0074   15.9   0.2    3.0  2  PF07720.7  Tetratricopeptide repeat
    0.00065   19.9  17.6       0.66   10.1   0.2    5.0  5  PF03704.12 Bacterial transcriptional activator domain
     0.0024   17.6   6.2       0.93    9.3   0.1    5.6  5  PF13374.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.17   11.0   6.3       0.29   10.2   0.1    3.5  4  PF10516.4  SHNi-TPR
       0.26   11.7  14.7        1.4    9.4   0.0    5.8  5  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     7e-08   5.3e-05       6      69 .]      63     125 ..      58     125 .. 0.96
   2 !   23.8   0.4     3e-08   2.3e-05       6      68 ..      97     158 ..      95     159 .. 0.95
   3 !   19.4   0.0   7.1e-07   0.00054      10      69 .]     180     239 ..     171     239 .. 0.72
   4 !   39.6   0.2   3.6e-13   2.7e-10       6      69 .]     211     273 ..     206     273 .. 0.95
   5 !   19.0   0.1   9.2e-07    0.0007       4      37 ..     243     276 ..     240     282 .. 0.90
   6 !   28.0   0.3   1.4e-09   1.1e-06       9      36 ..     294     321 ..     286     326 .. 0.91
   7 !   29.6   1.0   4.7e-10   3.6e-07       5      67 ..     328     389 ..     323     391 .. 0.95
   8 ?   -2.4   0.1       4.6   3.5e+03      17      28 ..     448     459 ..     426     469 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 7e-08
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 l+ +++++f  g+ d+A++++ + le++p n   y+ +A ++ +l  ++ +Al+d++ +l+l+P
  MMETSP0890-20130614|1872_1  63 LRSMAEEAFVSGRSDDALALWGRVLEMEPLNERNYLKRARVLSRLK-KPIAALADLDNSLRLAP 125
                 7899****************************************97.7**************98 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 3e-08
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 +  ++ +l +++++  A++ ++++l+l p++ e++  +A ++  lg+  e+ +ed +++l+l+
  MMETSP0890-20130614|1872_1  97 YLKRARVLSRLKKPIAALADLDNSLRLAPEYNEALTSRARLLVSLGR-CESGAEDWRLSLQLN 158
                 7889999***************************************5.7************97 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 7.1e-07
   PF13414.1  10 GnalfkegdydeAieayekAleldpnnae.lyynlAlaylklgkdyeeAledyekAleldP 69 
                 +  + +++++ + i++++  +e     +  ++  +A ay++lg+ y eA++d+ kAl++dP
  MMETSP0890-20130614|1872_1 180 AKTAQNNRNFRQQIDELNIVIETATLAPAgIFIDRATAYIELGDIY-EAIADLGKALKIDP 239
                 5555666666666666666666544433348999*********877.89***********9 PP

  == domain 4    score: 39.6 bits;  conditional E-value: 3.6e-13
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 +  ++ a++++gd  eAi+ + kAl++dp++ +++  ++ ay++lg d+  A  + ++ l+ldP
  MMETSP0890-20130614|1872_1 211 FIDRATAYIELGDIYEAIADLGKALKIDPDDLKALELRGIAYYRLG-DFAMAKNHWQQGLKLDP 273
                 567999****************************************.7***************9 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 9.2e-07
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnna 37 
                 +al  +G a++++gd++ A  +++++l+ldp++ 
  MMETSP0890-20130614|1872_1 243 KALELRGIAYYRLGDFAMAKNHWQQGLKLDPEHK 276
                 68899**************************995 PP

  == domain 6    score: 28.0 bits;  conditional E-value: 1.4e-09
   PF13414.1   9 lGnalfkegdydeAieayekAleldpnn 36 
                 +G a+f++g++ +A++ay++Al+ldpn+
  MMETSP0890-20130614|1872_1 294 AGDAFFEQGQFSQALDAYKQALALDPNH 321
                 79************************98 PP

  == domain 7    score: 29.6 bits;  conditional E-value: 4.7e-10
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 a+k  +nal+k++++ eAi+ ++  leld+n+ ++++ +  a+l    +++ Al+++++A e+
  MMETSP0890-20130614|1872_1 328 AHKKIANALLKLKKHREAIQSLDTVLELDENDLDAHLVRIDALLGDE-QFDLALRAAKRAREI 389
                 8999*****************************************97.7***********987 PP

  == domain 8    score: -2.4 bits;  conditional E-value: 4.6
   PF13414.1  17 gdydeAieayek 28 
                 ++ + Ai+++++
  MMETSP0890-20130614|1872_1 448 KEKEAAIKKFQQ 459
                 444555555554 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.11        83       8      32 ..      67      91 ..      63      93 .. 0.85
   2 !    7.4   0.1    0.0041       3.1       5      34 .]      98     127 ..      97     127 .. 0.91
   3 ?   -1.3   0.0       2.2   1.7e+03       3      33 ..     130     160 ..     129     161 .. 0.75
   4 !   24.0   0.0   2.3e-08   1.7e-05       6      34 .]     213     241 ..     208     241 .. 0.93
   5 !   24.5   0.1   1.6e-08   1.2e-05       3      34 .]     244     275 ..     242     275 .. 0.92
   6 !   29.4   0.1   4.6e-10   3.5e-07       8      34 .]     295     321 ..     295     321 .. 0.96
   7 !   23.9   0.0   2.5e-08   1.9e-05       3      34 .]     328     359 ..     326     359 .. 0.95
   8 ?    2.7   0.1      0.12        93      11      33 ..     370     392 ..     361     393 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.11
                HHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  8 GnaylklgkydeAleyyekALelnP 32
                +   +  g+ d+Al+   ++Le +P
  MMETSP0890-20130614|1872_1 67 AEEAFVSGRSDDALALWGRVLEMEP 91
                556677899*************998 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0041
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekALelnPnn 34 
                   ++ ++ +l+k+  Al++ +  L+l P++
  MMETSP0890-20130614|1872_1  98 LKRARVLSRLKKPIAALADLDNSLRLAPEY 127
                 56899999********************86 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPn 33 
                 al  ++ ++ +lg+ +   e+ +  L+ln+n
  MMETSP0890-20130614|1872_1 130 ALTSRARLLVSLGRCESGAEDWRLSLQLNHN 160
                 6777777777777777777888889999987 PP

  == domain 4    score: 24.0 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALelnPnn 34 
                  ++ ay +lg+  eA+++  kAL+++P++
  MMETSP0890-20130614|1872_1 213 DRATAYIELGDIYEAIADLGKALKIDPDD 241
                 699************************96 PP

  == domain 5    score: 24.5 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPnn 34 
                 al  +G ay++lg++  A  + ++ L+l+P++
  MMETSP0890-20130614|1872_1 244 ALELRGIAYYRLGDFAMAKNHWQQGLKLDPEH 275
                 66789*************************86 PP

  == domain 6    score: 29.4 bits;  conditional E-value: 4.6e-10
                 HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   8 GnaylklgkydeAleyyekALelnPnn 34 
                 G a++++g++ +Al++y++AL l+Pn+
  MMETSP0890-20130614|1872_1 295 GDAFFEQGQFSQALDAYKQALALDPNH 321
                 789**********************97 PP

  == domain 7    score: 23.9 bits;  conditional E-value: 2.5e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPnn 34 
                 a++ ++na+lkl+k+ eA++  + +Lel++n+
  MMETSP0890-20130614|1872_1 328 AHKKIANALLKLKKHREAIQSLDTVLELDEND 359
                 8999*************************996 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.12
                 HHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23  11 ylklgkydeAleyyekALelnPn 33 
                 +l  +++d Al + ++A e+  n
  MMETSP0890-20130614|1872_1 370 LLGDEQFDLALRAAKRAREIKDN 392
                 555689***********999876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.019        15       7      33 ..      66      92 ..      62      93 .. 0.87
   2 !    7.8   0.1     0.004         3       4      34 .]      97     127 ..      95     127 .. 0.93
   3 ?   -0.0   0.0       1.3   9.7e+02       2      33 ..     129     160 ..     128     161 .. 0.86
   4 !   21.2   0.0   2.1e-07   0.00016       5      34 .]     212     241 ..     208     241 .. 0.92
   5 !   29.7   0.2     4e-10   3.1e-07       2      34 .]     243     275 ..     242     275 .. 0.95
   6 !   26.7   0.1   3.5e-09   2.7e-06       7      34 .]     294     321 ..     292     321 .. 0.95
   7 !   17.5   0.0   3.2e-06    0.0025       3      34 .]     328     359 ..     326     359 .. 0.94
   8 ?    2.3   0.2      0.23   1.7e+02      10      33 ..     369     392 ..     368     393 .. 0.83
   9 ?   -1.5   0.4       3.7   2.8e+03      15      27 ..     448     460 ..     446     464 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.019
                HHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  7 lGlayyklgdyeeAleafekAleldPn 33
                +++ ++ +g+ ++Al+++ ++le +P 
  MMETSP0890-20130614|1872_1 66 MAEEAFVSGRSDDALALWGRVLEMEPL 92
                67778999***************9996 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.004
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 +  +++++ +l+++  Al++++ +l+l+P++
  MMETSP0890-20130614|1872_1  97 YLKRARVLSRLKKPIAALADLDNSLRLAPEY 127
                 6789*************************85 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 eal  +++++  lg+ e  +e+++ +l+l+ n
  MMETSP0890-20130614|1872_1 129 EALTSRARLLVSLGRCESGAEDWRLSLQLNHN 160
                 68888999999999999999999999999976 PP

  == domain 4    score: 21.2 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                   ++ ay++lgd  eA++++ kAl++dP++
  MMETSP0890-20130614|1872_1 212 IDRATAYIELGDIYEAIADLGKALKIDPDD 241
                 6799************************97 PP

  == domain 5    score: 29.7 bits;  conditional E-value: 4e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +al ++G ayy+lgd++ A++++++ l+ldP++
  MMETSP0890-20130614|1872_1 243 KALELRGIAYYRLGDFAMAKNHWQQGLKLDPEH 275
                 58999**************************96 PP

  == domain 6    score: 26.7 bits;  conditional E-value: 3.5e-09
                 HHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   7 lGlayyklgdyeeAleafekAleldPnn 34 
                  G+a +++g++ +Al+a+++Al+ldPn+
  MMETSP0890-20130614|1872_1 294 AGDAFFEQGQFSQALDAYKQALALDPNH 321
                 599***********************97 PP

  == domain 7    score: 17.5 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+  +++a++kl+++ eA++ ++ +leld n+
  MMETSP0890-20130614|1872_1 328 AHKKIANALLKLKKHREAIQSLDTVLELDEND 359
                 78899************************996 PP

  == domain 8    score: 2.3 bits;  conditional E-value: 0.23
                 HHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  10 ayyklgdyeeAleafekAleldPn 33 
                 a++   +++ Al+a ++A e+  n
  MMETSP0890-20130614|1872_1 369 ALLGDEQFDLALRAAKRAREIKDN 392
                 5667789***********999776 PP

  == domain 9    score: -1.5 bits;  conditional E-value: 3.7
                 T-HHHHHHHHHHH CS
  PF07719.12  15 gdyeeAleafekA 27 
                 ++ e A++ f++ 
  MMETSP0890-20130614|1872_1 448 KEKEAAIKKFQQI 460
                 67899*****985 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   4.0   1.1e-26   8.6e-24       1      64 []     413     477 ..     413     477 .. 0.98

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 1.1e-26
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC.HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde.eeaeekfkeineAyevLsdpekraeyd 64 
                 +yY++Lgv +das+++IkkaYr+lalkyHPDk +++e e+a +kf++i++Aye+Lsd+e ra+yd
  MMETSP0890-20130614|1872_1 413 NYYKVLGVRRDASSKDIKKAYRDLALKYHPDKVDEKEkEAAIKKFQQIANAYEILSDDELRARYD 477
                 7*******************************9999999999**********************8 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.8     6e-08   4.5e-05       3      63 ..      66     126 ..      64     128 .. 0.93
   2 !   13.6   0.7   9.4e-05     0.072       1      51 [.      98     148 ..      98     162 .. 0.86
   3 ?   -0.2   0.0       2.1   1.6e+03       3      34 ..     134     167 ..     132     187 .. 0.67
   4 !   28.0   0.2   2.9e-09   2.2e-06       2      62 ..     213     273 ..     212     285 .. 0.89
   5 !   17.3   0.7   6.6e-06     0.005       4      32 ..     295     323 ..     293     328 .. 0.84
   6 !   25.3   1.9     2e-08   1.5e-05       4      63 ..     333     392 ..     331     394 .. 0.94
   7 ?    0.2   0.1       1.6   1.2e+03      13      38 ..     450     479 ..     443     480 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6e-08
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  A++++ +G+ d+Ala++ ++l+ +P++ + +l +a++l rl+++ +A+a l+  l+laP 
  MMETSP0890-20130614|1872_1  66 MAEEAFVSGRSDDALALWGRVLEMEPLNERNYLKRARVLSRLKKPIAALADLDNSLRLAPE 126
                 6999*********************************************777777799996 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 9.4e-05
   PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa 51 
                 l++Ar l r++++ +Ala l+  l+laPe+ eal  +a++l  lgr +  a
  MMETSP0890-20130614|1872_1  98 LKRARVLSRLKKPIAALADLDNSLRLAPEYNEALTSRARLLVSLGRCESGA 148
                 679*************************************99998855555 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2.1
   PF13432.1   3 lArallraGdydeAlaaleaalala..Peaaeal 34 
                 +Ar+l+ +G+ +  ++ ++  l l+   e ae l
  MMETSP0890-20130614|1872_1 134 RARLLVSLGRCESGAEDWRLSLQLNhnSETAESL 167
                 6888888888888777777666666554444444 PP

  == domain 4    score: 28.0 bits;  conditional E-value: 2.9e-09
   PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62 
                 ++A a++++Gd  eA+a l +al+ +P++  al l++ a++rlg+++ A    ++ l+l+P
  MMETSP0890-20130614|1872_1 213 DRATAYIELGDIYEAIADLGKALKIDPDDLKALELRGIAYYRLGDFAMAKNHWQQGLKLDP 273
                 79********************************************988844444447777 PP

  == domain 5    score: 17.3 bits;  conditional E-value: 6.6e-06
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaae 32 
                 ++a++++G++ +Al+a+++alal+P +  
  MMETSP0890-20130614|1872_1 295 GDAFFEQGQFSQALDAYKQALALDPNHKA 323
                 8899********************96544 PP

  == domain 6    score: 25.3 bits;  conditional E-value: 2e-08
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                 A+all++++ +eA++ l+++l+l+  + +a+l + +all   ++d A+++ ++a ++ ++
  MMETSP0890-20130614|1872_1 333 ANALLKLKKHREAIQSLDTVLELDENDLDAHLVRIDALLGDEQFDLALRAAKRAREIKDN 392
                 9***********************99**********************999999877766 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 1.6
   PF13432.1  13 ydeAlaaleaalala....Peaaealllla 38 
                  ++A++ ++++  ++     +  +a++ ++
  MMETSP0890-20130614|1872_1 450 KEAAIKKFQQIANAYeilsDDELRARYDRG 479
                 589999999999999988877888888887 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.059        45       6      35 ..      65      94 ..      60      98 .. 0.84
   2 !    9.6   0.7    0.0019       1.4       3      44 .]      96     137 ..      94     137 .. 0.93
   3 !   18.1   0.1   3.4e-06    0.0026       5      40 ..     212     247 ..     208     249 .. 0.90
   4 !   14.1   0.0   6.7e-05     0.051       3      34 ..     244     275 ..     242     282 .. 0.92
   5 !   19.2   0.2   1.5e-06    0.0011       7      37 ..     294     324 ..     286     327 .. 0.90
   6 !   14.6   0.1   4.7e-05     0.036       3      40 ..     328     365 ..     326     369 .. 0.90
   7 ?    3.4   1.9      0.18   1.4e+02       2      37 ..     361     395 ..     360     406 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.059
   PF13428.1  6 alarallalGdpdeAiallrralalaPdda 35
                 +a+  + +G+ d+A+al  r+l+  P ++
  MMETSP0890-20130614|1872_1 65 SMAEEAFVSGRSDDALALWGRVLEMEPLNE 94
                567777789****************99886 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0019
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  +l++ar+l +l  p +A+a l+  l+laP+  eal+  arl
  MMETSP0890-20130614|1872_1  96 NYLKRARVLSRLKKPIAALADLDNSLRLAPEYNEALTSRARL 137
                 5899****************************9999988876 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 3.4e-06
   PF13428.1   5 lalarallalGdpdeAiallrralalaPddaealll 40 
                  ++a a+++lGd  eAia l +al+ +Pdd+ al l
  MMETSP0890-20130614|1872_1 212 IDRATAYIELGDIYEAIADLGKALKIDPDDLKALEL 247
                 579****************************99865 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 6.7e-05
   PF13428.1   3 allalarallalGdpdeAiallrralalaPdd 34 
                 al ++++a+ +lGd++ A ++ ++ l+l+P++
  MMETSP0890-20130614|1872_1 244 ALELRGIAYYRLGDFAMAKNHWQQGLKLDPEH 275
                 77889*************************86 PP

  == domain 5    score: 19.2 bits;  conditional E-value: 1.5e-06
   PF13428.1   7 larallalGdpdeAiallrralalaPddaea 37 
                  ++a++++G++ +A++++++alal+P++ ++
  MMETSP0890-20130614|1872_1 294 AGDAFFEQGQFSQALDAYKQALALDPNHKAY 324
                 689***********************98765 PP

  == domain 6    score: 14.6 bits;  conditional E-value: 4.7e-05
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealll 40 
                 a+ + a+all l  + eAi+ l+ +l+l+ +d++a+l 
  MMETSP0890-20130614|1872_1 328 AHKKIANALLKLKKHREAIQSLDTVLELDENDLDAHLV 365
                 66789******************************986 PP

  == domain 7    score: 3.4 bits;  conditional E-value: 0.18
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaea 37 
                 +a+l + +all  +++d A+++++ra +   d+++ 
  MMETSP0890-20130614|1872_1 361 DAHLVRIDALLGDEQFDLALRAAKRARE-IKDNDRT 395
                 577889999*****************54.4444444 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.3     4e+03      15      33 ..      74      93 ..      73      94 .. 0.85
   2 ?    1.6   0.0      0.35   2.7e+02       4      32 ..      97     125 ..      92     128 .. 0.89
   3 ?   -2.1   0.0       5.3     4e+03       7      17 ..     134     144 ..     129     158 .. 0.53
   4 !   16.8   0.0   4.8e-06    0.0036       6      33 ..     213     240 ..     208     241 .. 0.89
   5 !   17.0   0.0     4e-06    0.0031       2      32 ..     243     273 ..     242     275 .. 0.94
   6 !   15.5   0.0   1.2e-05    0.0095       8      34 .]     295     321 ..     293     321 .. 0.95
   7 !    8.0   0.1    0.0031       2.3       6      32 ..     331     357 ..     326     359 .. 0.88
   8 ?   -2.1   0.0       5.1   3.8e+03      16      32 ..     375     391 ..     368     393 .. 0.81
   9 ?   -0.6   0.4       1.8   1.4e+03      18      32 ..     400     414 ..     394     416 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.3
                T-HHHHHHHHH---HHHH.. CS
   PF13181.1 15 GdydkAkeylekalelkp.r 33
                G+ d A++   ++le+ p +
  MMETSP0890-20130614|1872_1 74 GRSDDALALWGRVLEMEPlN 93
                778999999999***99966 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.35
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                 y+ +++++  l++  +A++ l   l l+p
  MMETSP0890-20130614|1872_1  97 YLKRARVLSRLKKPIAALADLDNSLRLAP 125
                 88999****************99999998 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 5.3
                 ---HHHHTT-H CS
   PF13181.1   7 lGdiYrqlGdy 17 
                 +++++ +lG+ 
  MMETSP0890-20130614|1872_1 134 RARLLVSLGRC 144
                 55555555543 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 4.8e-06
                 T---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekalelkpr 33 
                  ++ +Y +lGd+ +A++ l kal+++p+
  MMETSP0890-20130614|1872_1 213 DRATAYIELGDIYEAIADLGKALKIDPD 240
                 57889*********************94 PP

  == domain 5    score: 17.0 bits;  conditional E-value: 4e-06
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ka+ ++G +Y  lGd+  Ak++ ++ l+l+p
  MMETSP0890-20130614|1872_1 243 KALELRGIAYYRLGDFAMAKNHWQQGLKLDP 273
                 68999*************************9 PP

  == domain 6    score: 15.5 bits;  conditional E-value: 1.2e-05
                 --HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   8 GdiYrqlGdydkAkeylekalelkprn 34 
                 Gd++++ G++++A+ ++++al l+p++
  MMETSP0890-20130614|1872_1 295 GDAFFEQGQFSQALDAYKQALALDPNH 321
                 99***********************75 PP

  == domain 7    score: 8.0 bits;  conditional E-value: 0.0031
                 T---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekalelkp 32 
                  ++ ++++l+++ +A+++l  +lel+ 
  MMETSP0890-20130614|1872_1 331 KIANALLKLKKHREAIQSLDTVLELDE 357
                 68999********************97 PP

  == domain 8    score: -2.1 bits;  conditional E-value: 5.1
                 -HHHHHHHHH---HHHH CS
   PF13181.1  16 dydkAkeylekalelkp 32 
                 ++d+A+ + ++a e+k 
  MMETSP0890-20130614|1872_1 375 QFDLALRAAKRAREIKD 391
                 78999999999988886 PP

  == domain 9    score: -0.6 bits;  conditional E-value: 1.8
                 HHHHHHHH---HHHH CS
   PF13181.1  18 dkAkeylekalelkp 32 
                  kA+++l++  ++++
  MMETSP0890-20130614|1872_1 400 AKAEAALKQSKSINY 414
                 577777777766654 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.0   7.9e-06     0.006       8      68 ..      73     133 ..      69     136 .. 0.89
   2 !   20.0   0.3   5.3e-07    0.0004      13      69 ..     112     168 ..     109     170 .. 0.96
   3 !   15.9   0.2     1e-05    0.0076      34      69 ..     213     248 ..     206     248 .. 0.93
   4 !   19.5   0.3   7.5e-07   0.00057       4      62 ..     217     275 ..     216     280 .. 0.91
   5 !   20.2   0.9   4.6e-07   0.00035       5      69 ..     298     366 ..     294     367 .. 0.96
   6 ?    0.7   0.0      0.55   4.2e+02       6      27 ..     371     392 ..     368     397 .. 0.82
   7 ?   -2.7   0.1       6.5   4.9e+03      24      36 ..     467     479 ..     463     480 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.9e-06
   PF13371.1   8 eedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaeli 68 
                 +++ + ALa   r+l++ P   +++  r+ +l +l  + aA++dL+  l l+p+  +a + 
  MMETSP0890-20130614|1872_1  73 SGRSDDALALWGRVLEMEPLNERNYLKRARVLSRLKKPIAALADLDNSLRLAPEYNEALTS 133
                 678899***********************************************87666655 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 5.3e-07
   PF13371.1  13 rALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelir 69 
                 +ALa ++ +l+laP+  + +  r+ ll+ lg+ + +aed +  l+l ++ ++ae +r
  MMETSP0890-20130614|1872_1 112 AALADLDNSLRLAPEYNEALTSRARLLVSLGRCESGAEDWRLSLQLNHNSETAESLR 168
                 79***************************************************9988 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1e-05
   PF13371.1  34 DrGlllaqlgclaaAaedLeaflelcpdapdaelir 69 
                 Dr+ ++ +lg+  +A++dL  +l+ +pd+  a  +r
  MMETSP0890-20130614|1872_1 213 DRATAYIELGDIYEAIADLGKALKIDPDDLKALELR 248
                 9****************************9998765 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 7.5e-07
   PF13371.1   4 iylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpda 62 
                 +y++ +d  +A+a +   l ++Pdd+  +  rG+++++lg++a A +  ++ l+l+p++
  MMETSP0890-20130614|1872_1 217 AYIELGDIYEAIADLGKALKIDPDDLKALELRGIAYYRLGDFAMAKNHWQQGLKLDPEH 275
                 6899999999999999*****************************99988888888865 PP

  == domain 5    score: 20.2 bits;  conditional E-value: 4.6e-07
   PF13371.1   5 ylreedferALavverllllaPd....dpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelir 69 
                  +++++f +AL ++   l+l+P+    + + +   + +l +l  +++A++ L++ lel++++ da+l+r
  MMETSP0890-20130614|1872_1 298 FFEQGQFSQALDAYKQALALDPNhkayAISAHKKIANALLKLKKHREAIQSLDTVLELDENDLDAHLVR 366
                 6899*******************999999999**********************************997 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.55
   PF13371.1   6 lreedferALavverllllaPd 27 
                 l  e+f+ AL+++ r  +++ +
  MMETSP0890-20130614|1872_1 371 LGDEQFDLALRAAKRAREIKDN 392
                 6679***********9888655 PP

  == domain 7    score: -2.7 bits;  conditional E-value: 6.5
   PF13371.1  24 laPddpyerRDrG 36 
                 l+ d ++ r+DrG
  MMETSP0890-20130614|1872_1 467 LSDDELRARYDRG 479
                 56689999****9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0       0.1        77      18      51 ..      73     106 ..      62     107 .. 0.79
   2 !   12.9   0.2   9.1e-05     0.069       8      68 ..      97     157 ..      90     166 .. 0.91
   3 !   21.4   0.1     2e-07   0.00015      10      76 ..     213     272 ..     206     274 .. 0.89
   4 !   26.7   1.6   4.7e-09   3.6e-06      11      77 ..     294     357 ..     291     358 .. 0.89
   5 !    9.6   2.3   0.00097      0.73       6      74 ..     327     388 ..     321     392 .. 0.68
   6 ?    0.7   0.4      0.58   4.4e+02      15      35 ..     370     390 ..     356     411 .. 0.67
   7 ?   -3.0   0.1       8.4   6.4e+03      23      42 ..     452     471 ..     447     475 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.1
   PF13424.1  18 lgdydeAlelyekalellrelgddhpdtaralnn 51 
                  g+ d+Al+l  ++le+  +  ++ + +ar+l  
  MMETSP0890-20130614|1872_1  73 SGRSDDALALWGRVLEMEPLNERNYLKRARVLSR 106
                 6899999999999999988888888888888865 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 9.1e-05
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAley 68 
                 +   a vl rl++   Al+ +  +l l+ e+ ++   +ar+l  l+++   ++d   +l++
  MMETSP0890-20130614|1872_1  97 YLKRARVLSRLKKPIAALADLDNSLRLAPEYNEALTSRARLLVSLGRCESGAEDWRLSLQL 157
                 56899*******************************************9999999888887 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 2e-07
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                   a+++ +lgd  eA++ + kal++        pd ++al   +++y++lgd++ A+++ ++ l+++
  MMETSP0890-20130614|1872_1 213 DRATAYIELGDIYEAIADLGKALKID-------PDDLKALELRGIAYYRLGDFAMAKNHWQQGLKLD 272
                 6799*********************3.......45589**************************997 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 4.7e-09
   PF13424.1  11 lalvlrrlgdydeAlelyekalellrelgddhpdta.ralnnlanlylalgdydeAleylekAleiae 77 
                  +++++++g++ +Al+ y++al+l     ++h  +a +a   +an++l+l+++ eA++ l  +le++e
  MMETSP0890-20130614|1872_1 294 AGDAFFEQGQFSQALDAYKQALALD----PNHKAYAiSAHKKIANALLKLKKHREAIQSLDTVLELDE 357
                 58999*****************995....67777773668***********************99987 PP

  == domain 5    score: 9.6 bits;  conditional E-value: 0.00097
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                 +++  +a++l++l+++ eA++ + ++lel +   d+h+          +++l  +++d Al+  ++A e
  MMETSP0890-20130614|1872_1 327 SAHKKIANALLKLKKHREAIQSLDTVLELDENDLDAHL-------VRIDALLGDEQFDLALRAAKRARE 388
                 568899*********************99544444443.......233444444556666666666655 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.58
   PF13424.1  15 lrrlgdydeAlelyekalell 35 
                 l+  +++d Al   ++a e+ 
  MMETSP0890-20130614|1872_1 370 LLGDEQFDLALRAAKRAREIK 390
                 444455555555555555553 PP

  == domain 7    score: -3.0 bits;  conditional E-value: 8.4
   PF13424.1  23 eAlelyekalellrelgddh 42 
                  A++ +++  + ++ l dd 
  MMETSP0890-20130614|1872_1 452 AAIKKFQQIANAYEILSDDE 471
                 56677777777777776665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.26     2e+02       4      33 ..      85     114 ..      83     115 .. 0.88
   2 ?    5.1   0.0     0.036        27       3      28 ..     118     143 ..     116     166 .. 0.85
   3 ?    2.1   0.0      0.35   2.6e+02      12      32 ..     214     234 ..     212     234 .. 0.79
   4 !   17.1   0.0   5.1e-06    0.0039       4      33 ..     233     262 ..     230     263 .. 0.95
   5 !   11.0   0.6   0.00045      0.34       1      34 []     310     347 ..     310     347 .. 0.91
   6 ?   -1.3   0.0         4     3e+03       4      16 ..     351     363 ..     349     380 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.26
   PF13431.1   4 kaleldPnnadaynnLAelllnnGdleeAe 33 
                 + le +P n  +y  +A++l++++++  A+
  MMETSP0890-20130614|1872_1  85 RVLEMEPLNERNYLKRARVLSRLKKPIAAL 114
                 67999****************999887765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.036
   PF13431.1   3 ekaleldPnnadaynnLAelllnnGd 28 
                  ++l+l+P++ +a++ +A+ll ++G+
  MMETSP0890-20130614|1872_1 118 DNSLRLAPEYNEALTSRARLLVSLGR 143
                 689******************98876 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.35
   PF13431.1  12 nadaynnLAelllnnGdleeA 32 
                  a ay +L+ ++ ++ dl +A
  MMETSP0890-20130614|1872_1 214 RATAYIELGDIYEAIADLGKA 234
                 688999999999987777665 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 5.1e-06
   PF13431.1   4 kaleldPnnadaynnLAelllnnGdleeAe 33 
                 kal++dP++  a+  ++ +++++Gd+++A+
  MMETSP0890-20130614|1872_1 233 KALKIDPDDLKALELRGIAYYRLGDFAMAK 262
                 9***************************98 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 0.00045
   PF13431.1   1 lyekaleldPnn....adaynnLAelllnnGdleeAeq 34 
                 +y++al+ldPn+      a+   A++ll++++++eA+q
  MMETSP0890-20130614|1872_1 310 AYKQALALDPNHkayaISAHKKIANALLKLKKHREAIQ 347
                 6**********9999777777***************98 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 4
   PF13431.1   4 kaleldPnnaday 16 
                   leld n+ da+
  MMETSP0890-20130614|1872_1 351 TVLELDENDLDAH 363
                 5799*****9997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.73   5.5e+02      12      35 ..      73      94 ..      67      95 .. 0.83
   2 ?    3.5   0.0     0.087        66       7      33 ..     216     242 ..     214     245 .. 0.70
   3 !    7.8   0.0    0.0037       2.8       6      35 ..     249     276 ..     244     277 .. 0.89
   4 !   20.1   0.0   4.2e-07   0.00032       6      35 ..     295     322 ..     293     323 .. 0.92
   5 ?    6.2   0.1     0.012       9.2       3      34 ..     330     361 ..     328     362 .. 0.84
   6 ?   -2.6   0.0         8   6.1e+03      18      24 ..     453     459 ..     449     471 .. 0.54

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.73
   PF13176.1 12 lgdyekAielyeraLaltkdplda 35
                +g+ ++A+ l  r  +l+ +pl++
  MMETSP0890-20130614|1872_1 73 SGRSDDALALWGR--VLEMEPLNE 94
                5899*********..888887765 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.087
   PF13176.1   7 rlysrlgdyekAielyeraLaltkdpl 33 
                  +y +lgd  +Ai  + +aL+++ d+l
  MMETSP0890-20130614|1872_1 216 TAYIELGDIYEAIADLGKALKIDPDDL 242
                 577788888888888888666666665 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0037
   PF13176.1   6 arlysrlgdyekAielyeraLaltkdplda 35 
                 + +y rlgd+  A ++ ++  +l+ dp+++
  MMETSP0890-20130614|1872_1 249 GIAYYRLGDFAMAKNHWQQ--GLKLDPEHK 276
                 56899**************..******986 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 4.2e-07
   PF13176.1   6 arlysrlgdyekAielyeraLaltkdplda 35 
                 +++++++g++++A+++y++  al+ dp+++
  MMETSP0890-20130614|1872_1 295 GDAFFEQGQFSQALDAYKQ--ALALDPNHK 322
                 89*****************..999999886 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.012
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdpld 34 
                   +a++  +l ++++Ai+ +   L+l++ +ld
  MMETSP0890-20130614|1872_1 330 KKIANALLKLKKHREAIQSLDTVLELDENDLD 361
                 5699******************7777776665 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 8
   PF13176.1  18 Aielyer 24 
                 Ai+ +++
  MMETSP0890-20130614|1872_1 453 AIKKFQQ 459
                 5555555 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.016        13       5      75 ..      76     145 ..      73     149 .. 0.77
   2 !    7.6   0.1    0.0048       3.7      31      77 ..     214     261 ..     158     264 .. 0.87
   3 !    6.8   0.0    0.0086       6.5      12      61 ..     231     279 ..     222     293 .. 0.78
   4 !   22.5   1.1   1.1e-07   8.5e-05      33      82 ..     296     350 ..     290     352 .. 0.86
   5 ?   -0.4   0.1       1.6   1.2e+03      40      72 ..     375     409 ..     354     436 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HH CS
   PF12895.2   5 yknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkyd 75 
                  ++Al l  ++l+++p   +  +++  A +l +++++ +A+  l++ l l ++  ++    Ar l+ lg+ +
  MMETSP0890-20130614|1872_1  76 SDDALALWGRVLEMEP--LNERNYLKRARVLSRLKKPIAALADLDNsLRLAPEYNEALTSRARLLVSLGRCE 145
                 579999999*****87..378888889****************98886666655355555577777777755 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0048
                 HHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHH CS
   PF12895.2  31 lAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeA 77 
                  A ++ ++g+ ++A+  l k l++d+  l++  l + +++ lg++  A
  MMETSP0890-20130614|1872_1 214 RATAYIELGDIYEAIADLGKaLKIDPDDLKALELRGIAYYRLGDFAMA 261
                 5899**************999999999999999999999999987655 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0086
                 HHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHH CS
   PF12895.2  12 aekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcr 61 
                 + k+l+ +p d +  +l + + ++y++g++  A +  ++ l+ld+++ gc+
  MMETSP0890-20130614|1872_1 231 LGKALKIDP-D-DLKALELRGIAYYRLGDFAMAKNHWQQgLKLDPEHKGCK 279
                 567888887.3.555666679************999999999999997775 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 1.1e-07
                 HHHHH---HHHHHHHHHC.TSHCHCB....HHHHHHHHHHHHHTT-HHHHCCCHH CS
   PF12895.2  33 lclylngeykrAyellrk.leldsss....lgcryllArcllklgkydeAiavLe 82 
                  +++++g++ +A++++++ l ld+++    + ++  +A +llkl+k+ eAi+ L+
  MMETSP0890-20130614|1872_1 296 DAFFEQGQFSQALDAYKQaLALDPNHkayaISAHKKIANALLKLKKHREAIQSLD 350
                 689*************99*888888855556777799***************997 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 1.6
                 -HHHHHHHHHC.TSHCHCB.HHHHHHHHHHHHHTT CS
   PF12895.2  40 eykrAyellrk.leldsss.lgcryllArcllklg 72 
                 +++ A+ + ++  e++++   + +  +A+++lk++
  MMETSP0890-20130614|1872_1 375 QFDLALRAAKRaREIKDNDrTKNAQAKAEAALKQS 409
                 44444444444422222110122222344444433 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.4   1.1e+03      14      29 ..      74      89 ..      63      92 .. 0.74
   2 ?   -1.8   0.0       6.9   5.2e+03       3      25 ..      97     119 ..      96     126 .. 0.76
   3 ?    6.4   0.0     0.016        12       7      32 ..     215     240 ..     213     241 .. 0.93
   4 ?    4.9   0.0      0.05        38       2      25 ..     244     267 ..     243     275 .. 0.83
   5 !   14.2   0.1   5.2e-05      0.04       7      33 .]     295     321 ..     293     321 .. 0.93
   6 ?    5.7   0.0     0.026        20       5      28 ..     331     354 ..     331     356 .. 0.92
   7 ?   -2.2   0.4       9.2     7e+03      19      19 ..     398     398 ..     374     418 .. 0.58
   8 ?    2.4   0.2       0.3   2.3e+02      14      30 ..     448     464 ..     430     464 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHHHHH CS
   PF13174.1 14 gdtdeAlealerlike 29
                g++d+Al+++ r+++ 
  MMETSP0890-20130614|1872_1 74 GRSDDALALWGRVLEM 89
                699*******999985 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 6.9
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealer 25 
                 ++k+a+++ +l+++ +Al+ l++
  MMETSP0890-20130614|1872_1  97 YLKRARVLSRLKKPIAALADLDN 119
                 68999999998888888877665 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   7 alsyyklgdtdeAlealerlikeyPd 32 
                 a +y++lgd  eA++ l + +k  Pd
  MMETSP0890-20130614|1872_1 215 ATAYIELGDIYEAIADLGKALKIDPD 240
                 89****99**************9998 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealer 25 
                 Al +++ +yy+lgd++ A+  +++
  MMETSP0890-20130614|1872_1 244 ALELRGIAYYRLGDFAMAKNHWQQ 267
                 5667899****99***99999887 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   7 alsyyklgdtdeAlealerlikeyPdS 33 
                 + +++++g++++Al+a+++ ++  P++
  MMETSP0890-20130614|1872_1 295 GDAFFEQGQFSQALDAYKQALALDPNH 321
                 899********************9996 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 k+a +++kl++++eA++ l+ +++
  MMETSP0890-20130614|1872_1 331 KIANALLKLKKHREAIQSLDTVLE 354
                 6899****99**********9987 PP

  == domain 7    score: -2.2 bits;  conditional E-value: 9.2
                 H CS
   PF13174.1  19 A 19 
                 A
  MMETSP0890-20130614|1872_1 398 A 398
                 2 PP

  == domain 8    score: 2.4 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHH- CS
   PF13174.1  14 gdtdeAlealerlikey 30 
                 +++++A++ ++++ + y
  MMETSP0890-20130614|1872_1 448 KEKEAAIKKFQQIANAY 464
                 5899*********9988 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.64   4.9e+02       1      32 [.     239     271 ..     239     274 .. 0.78
   2 !   15.9   0.2   9.8e-06    0.0074      10      35 ..     297     320 ..     295     321 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.64
                 HHHHHHH...HHHHHHTT-HHHHHHH..HHHHHHH CS
   PF07720.7   1 ldylysl...AaefynkkkyqeArelfsYallail 32 
                 +d+l++l   + ++y  +++  A +  +  +  +l
  MMETSP0890-20130614|1872_1 239 PDDLKALelrGIAYYRLGDFAMAKNHWQ--QGLKL 271
                 7999999999********9998866655..55555 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 9.8e-06
                 HHHHTT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7  10 efynkkkyqeArelfsYallaildke 35 
                 +f+ ++++ +A+++  Y+++ +ld++
  MMETSP0890-20130614|1872_1 297 AFFEQGQFSQALDA--YKQALALDPN 320
                 699***********..99******96 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00087      0.66      66     117 ..      64     115 ..      57     123 .. 0.90
   2 ?   -0.7   0.3       1.8   1.4e+03      56      98 ..     122     164 ..     115     182 .. 0.70
   3 ?    6.5   0.0     0.011       8.4      67     121 ..     213     267 ..     206     271 .. 0.91
   4 ?    2.1   0.1      0.26     2e+02       7      35 ..     289     317 ..     284     318 .. 0.83
   5 !    7.3   2.5    0.0064       4.9      58     124 ..     322     388 ..     301     393 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00087
  PF03704.12  66 ealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALe 117
                 + ++e+ +  gr +++la + + ++ +Pl+Er + +  r l r+ +  +AL+
  MMETSP0890-20130614|1872_1  64 RSMAEEAFVSGRSDDALALWGRVLEMEPLNERNYLKRARVLSRLKKPIAALA 115
                 6678889999************************999999999999888886 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.8
  PF03704.12  56 rleelrlealealieadlrlgrheellaelealvalhPlrErl 98 
                 rl  +  eal+ ++++ + lgr e+ +++++  ++l+  +E++
  MMETSP0890-20130614|1872_1 122 RLAPEYNEALTSRARLLVSLGRCESGAEDWRLSLQLNHNSETA 164
                 5666677888889999999998887777766666555555543 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.011
  PF03704.12  67 alieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrr 121
                 +++ a ++lg+  e++a+l ++++ +P + ++ +    A+yr+G+ a A ++ ++
  MMETSP0890-20130614|1872_1 213 DRATAYIELGDIYEAIADLGKALKIDPDDLKALELRGIAYYRLGDFAMAKNHWQQ 267
                 57888999*************************************9999888776 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.26
  PF03704.12   7 erlvaagrralaagdpeeaarlleaalal 35 
                  ++++ag++ +++g++++a++++++alal
  MMETSP0890-20130614|1872_1 289 VKKDTAGDAFFEQGQFSQALDAYKQALAL 317
                 56678889999999999999999999987 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0064
  PF03704.12  58 eelrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrrlrr 124
                 +   ++a+++++ a l+l +h+e+++ l   ++l+  + ++h   + Al   ++   AL++ +r+r+
  MMETSP0890-20130614|1872_1 322 KAYAISAHKKIANALLKLKKHREAIQSLDTVLELDENDLDAHLVRIDALLGDEQFDLALRAAKRARE 388
                 566899**********************************************9*9*****9999987 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.3   9.8e+02      16      31 ..      74      89 ..      71      90 .. 0.88
   2 ?    0.2   0.0       0.9   6.8e+02       2      24 ..     215     237 ..     214     240 .. 0.86
   3 ?    4.3   0.1     0.045        35       9      29 ..     249     269 ..     242     271 .. 0.87
   4 !    9.3   0.1    0.0012      0.93      10      31 ..     296     317 ..     293     318 .. 0.91
   5 ?   -0.5   0.0       1.5   1.2e+03       8      30 ..     332     354 ..     331     358 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 1.3
   PF13374.1 16 gryeeAlaleeealai 31
                gr ++Alal  ++l++
  MMETSP0890-20130614|1872_1 74 GRSDDALALWGRVLEM 89
                8999*****9999987 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.9
   PF13374.1   2 aaalnnLAlalrargryeeAlal 24 
                 a+a+  L+ ++ a  ++++Al++
  MMETSP0890-20130614|1872_1 215 ATAYIELGDIYEAIADLGKALKI 237
                 78999999999999999999976 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.045
   PF13374.1   9 AlalrargryeeAlaleeeal 29 
                 ++a++++g+++ A ++ ++ l
  MMETSP0890-20130614|1872_1 249 GIAYYRLGDFAMAKNHWQQGL 269
                 89************9999865 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.0012
   PF13374.1  10 lalrargryeeAlaleeealai 31 
                  a++++g++ +Al+ + +ala+
  MMETSP0890-20130614|1872_1 296 DAFFEQGQFSQALDAYKQALAL 317
                 589*****************95 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 1.5
   PF13374.1   8 LAlalrargryeeAlaleeeala 30 
                 +A+al ++++++eA + +  +l+
  MMETSP0890-20130614|1872_1 332 IANALLKLKKHREAIQSLDTVLE 354
                 699***********877777776 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.2   2.4e+03      20      30 ..     113     123 ..     112     130 .. 0.82
   2 ?   -3.8   0.0       9.5   7.2e+03       4      10 ..     218     224 ..     217     224 .. 0.89
   3 ?    2.5   0.0     0.099        75      19      30 ..     226     237 ..     225     237 .. 0.93
   4 ?   10.2   0.1   0.00039      0.29       8      30 ..     295     317 ..     292     322 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.2
   PF10516.4  20 AveDlrkaLeL 30 
                 A+ Dl  +L L
  MMETSP0890-20130614|1872_1 113 ALADLDNSLRL 123
                 999**999987 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 9.5
   PF10516.4   4 ydlLGEi 10 
                 y+ LG+i
  MMETSP0890-20130614|1872_1 218 YIELGDI 224
                 999**98 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.099
   PF10516.4  19 qAveDlrkaLeL 30 
                 +A+ Dl kaL++
  MMETSP0890-20130614|1872_1 226 EAIADLGKALKI 237
                 7*********98 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00039
   PF10516.4   8 GEiSlEnEnFpqAveDlrkaLeL 30 
                 G+ ++E+++F+qA+  ++ aL+L
  MMETSP0890-20130614|1872_1 295 GDAFFEQGQFSQALDAYKQALAL 317
                 7779*****************98 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1      0.02        15       6      26 .]      65      85 ..      60      85 .. 0.82
   2 ?   -2.1   0.1       9.5   7.2e+03       3      16 ..     130     143 ..     129     143 .. 0.79
   3 ?    1.5   0.0      0.67   5.1e+02       5      19 ..     212     226 ..     210     229 .. 0.84
   4 ?    9.4   0.0    0.0019       1.4       3      26 .]     244     267 ..     243     267 .. 0.88
   5 ?   -0.2   0.0       2.4   1.8e+03       9      23 ..     296     310 ..     294     313 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.02
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                 +A+ ++  G++d+A+al+ r
  MMETSP0890-20130614|1872_1 65 SMAEEAFVSGRSDDALALWGR 85
                568888999*********965 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 9.5
                 HH---HHHHHH--- CS
   PF07721.9   3 allaLArallalGd 16 
                 al  +Ar+l  lG+
  MMETSP0890-20130614|1872_1 130 ALTSRARLLVSLGR 143
                 56678999998887 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.67
                 ---HHHHHH------ CS
   PF07721.9   5 laLArallalGdlde 19 
                 +++A a+ +lGd  e
  MMETSP0890-20130614|1872_1 212 IDRATAYIELGDIYE 226
                 579*********755 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.0019
                 HH---HHHHHH-------HHHHHT CS
   PF07721.9   3 allaLArallalGdldeAraller 26 
                 al +++ a+++lGd++ A  ++++
  MMETSP0890-20130614|1872_1 244 ALELRGIAYYRLGDFAMAKNHWQQ 267
                 56789*************999876 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 2.4
                 HHHHH-------HHH CS
   PF07721.9   9 rallalGdldeAral 23 
                  a +++G++ +A+++
  MMETSP0890-20130614|1872_1 296 DAFFEQGQFSQALDA 310
                 57789*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       959  (0.0701434); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:01.07
# Mc/sec: 1169.06
//
Query:       MMETSP0890-20130614|1876_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.7   1.1      0.049   13.3   0.8    1.2  1  PF10218.4 Uncharacterized conserved protein (DUF2054)


Domain annotation for each model (and alignments):
>> PF10218.4  Uncharacterized conserved protein (DUF2054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   3.6e-06     0.049      57     126 ..      31      99 ..      21     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.6e-06
   PF10218.4  57 lsseCCevyeyCvsCClnPskrpllekvlakaaaakkavlatvkdafelClakCrtnsesvlhenkyrdp 126
                 l+++CC+  e   + C   s      +vl  aaa k +++   ++af  Cla+ + + +++  en+  +p
  MMETSP0890-20130614|1876_1  31 LDVRCCSGCESVQAVCQMISDVG-DADVLLCAAAIKDELSRLKDEAFSCCLARPKAQDNTIIVENRSTSP 99 
                 5689*******999998888555.5556658888999999999**********************97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 393.15
//
Query:       MMETSP0890-20130614|1877_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-36  123.6   3.5    1.2e-35  122.9   2.4    1.3  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
  ------ inclusion threshold ------
      0.039   13.3   0.6      0.055   12.9   0.4    1.2  1  PF02194.10 PXA domain
      0.078   13.0   3.2      0.086   12.8   2.2    1.2  1  PF02993.9  Minor capsid protein VI
       0.31   10.6   1.8         16    5.0   0.0    2.2  2  PF09769.4  Apolipoprotein O


Domain annotation for each model (and alignments):
>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   2.4   3.4e-39   1.2e-35       1     147 [.      25     161 ..      25     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 3.4e-39
   PF10152.4   1 vNkfvistvqfLNrFsaecEskLveiersLqqlElklqlLeakLasidgleeledqdelpappaaarrsggpppppgaraeaaaqeaeaaraetpaeqepealaegrlt.vrkdpryakYfkmlklgVpaeavknKmqaeGldpelld 147
                 vN+f+++t++f N+F++ cE+kL +++r+L ++El+l lLeakL+s++g ++++     ++++a++++s++ p+ ++       ++++++ + +++++e +++a +++t  r++p ya Yfk+  lgVp++++k+Kmq +G+dp++ d
  MMETSP0890-20130614|1877_1  25 VNNFIVNTTEFVNEFASTCEEKLSQVSRRLSDVELTLALLEAKLNSVPGISDVS-----DEKEAQNKTSSDLPTYEE------KEQQQNEVVRNEQQVETKSTADNDMTpAREHPTYAPYFKLQRLGVPEPQIKMKMQNDGVDPSVFD 161
                 8****************************************************5.....567888888888888888......23333333333333334444455555166*********************************988 PP

>> PF02194.10  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   1.6e-05     0.055      27     104 ..      29     116 ..      27     138 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
  PF02194.10  27 ispdrefpeeirqslesailelsqrlrrvDlaellttrlldllskhlesfreaeqev..........erekkspqseeeelelkialk 104
                 i +  ef++e  ++ e+ + ++s+rl++v+l   l++  l+ +     + +e e+++          e+e++++++ ++e++ + ++ 
  MMETSP0890-20130614|1877_1  29 IVNTTEFVNEFASTCEEKLSQVSRRLSDVELTLALLEAKLNSVPGISDVSDEKEAQNktssdlptyeEKEQQQNEVVRNEQQVETKST 116
                 56778********************************999999888777777776664466666644333333222222222222222 PP

>> PF02993.9  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.2   2.5e-05     0.086      84     194 ..      65     174 ..       9     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
   PF02993.9  84 gqginglvDigrqkvekdlekrlekrlge..eepatqeetvedlkqaeekkkrpeaeetlvpaapepPsleealkqkpapveepveesatavlaldkpvtlelpp..aeqkapkv 194
                  + +n++  i  +  ek+ +++    l++  e++++q     ++   e++ + + ++++ ++ a+e P + +  k + + v ep  +++ +  ++d p   + p    +++a+++
  MMETSP0890-20130614|1877_1  65 EAKLNSVPGISDVSDEKEAQNKTSSDLPTyeEKEQQQN----EVVRNEQQVETKSTADNDMTPAREHPTYAPYFKLQRLGVPEPQIKMKMQNDGVD-PSVFDDPDrlLPTPASNT 174
                 55566666666666678888888877775322233333....3556777777777889999****************9999999999999988744.433443333455555544 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0046        16      38      76 ..      20      58 ..       5      70 .. 0.85
   2 ?    4.1   0.8    0.0087        30       4      44 ..      79     112 ..      77     143 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0046
   PF09769.4 38 rptdrLeaqirsaRlfleeklsavedavntvksrvldte 76
                 ++  + ++i  + +f++e +s +e+++++v+ r  d+e
  MMETSP0890-20130614|1877_1 20 HTVMLVNNFIVNTTEFVNEFASTCEEKLSQVSRRLSDVE 58
                566667788889999*******************99988 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0087
   PF09769.4   4 ddedskpvppeelpiytkpeeeakllgenslysvrptdrLe 44 
                 d+++ +++ ++ lp+y+++e+++  + +n+        ++e
  MMETSP0890-20130614|1877_1  79 DEKEAQNKTSSDLPTYEEKEQQQNEVVRNEQ-------QVE 112
                 566666678899******7777774444443.......222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1125  (0.082285); expected 273.4 (0.02)
Passed bias filter:                      607  (0.0443973); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.47s 00:00:00.99 Elapsed: 00:00:01.02
# Mc/sec: 469.87
//
Query:       MMETSP0890-20130614|1882_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   13.6   6.3      0.031   13.3   4.4    1.2  1  PF09468.5  Ydr279p protein family (RNase H2 complex component)
      0.045   13.6  11.6      0.066   13.1   8.1    1.2  1  PF05501.6  Domain of unknown function (DUF755)
       0.21   10.1   9.8       0.23   10.0   6.8    1.1  1  PF12569.3  NMDA receptor-regulated protein 1
       0.59    8.5   7.6       0.78    8.1   5.3    1.0  1  PF04499.10 SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   4.4   9.1e-06     0.031     226     290 ..      79     154 ..      43     158 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.1e-06
                 XXXXXXXX.....XXXXXXX.....X.........XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX CS
   PF09468.5 226 llkellks....vdFaplekylaela.........sdlskkreaeedaeaaesra.ekkrkkeeeekkkkakeskgvka 290
                 l+++l+k+     ++a+l +++++ +         +  ++kr++   a+aae++   +++++e+++ kkk k sk++ka
  MMETSP0890-20130614|1882_1  79 LTQWLNKNdltpECMAALPEEKKKEQrvldddakaKRDKRKRAR---AKAAEEVRkLNEQNSESSSSKKKNKSSKKKKA 154
                 44444444444466777777666655666655322222223322...23333332222333333333333334555544 PP

>> PF05501.6  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   8.1   1.9e-05     0.066      66     120 ..      98     152 ..      79     155 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.9e-05
   PF05501.6  66 qkkrkeqkkssqthkkkkkksrnvssrsakkksakkrkksssSSsssssssssss 120
                 ++k+keq       k k+ k+++ +++ a+ +++ ++++s+sSSs  +++ss+++
  MMETSP0890-20130614|1882_1  98 EEKKKEQRVLDDDAKAKRDKRKRARAKAAEEVRKLNEQNSESSSSKKKNKSSKKK 152
                 4556666666666666666666655555555555555556666666666666555 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.8   6.7e-05      0.23     399     461 ..      97     156 ..      66     164 .] 0.53

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.7e-05
   PF12569.3 399 eeeeaanaelsaaerkklrkkakkaekkaekeeaekaekeeekkaaekkakkedeetkkkdpd 461
                 +ee+++ + + ++++k  r k k+a++ka++e  + +e+++e++   +++kk+++++kkk++ 
  MMETSP0890-20130614|1882_1  97 PEEKKKEQRVLDDDAKAKRDKRKRARAKAAEEVRKLNEQNSESS---SSKKKNKSSKKKKATS 156
                 33344445666667676677778888887777777655555533...3333333344444333 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.3   0.00023      0.78     228     324 ..      53     155 ..      53     162 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00023
  PF04499.10 228 LhcsnmgLLNekkgeeivkerDaer..erlleelqkaleeeee.seeeaedtsadae.qdsaedkreleasnasedseeededdeeseeseesees..aaelt 324
                 Lh s+ + LN+   +++++++Da++  ++ l++ + ++e   +  ee+++++ + +  +++++dkr+ + ++a+e+  + +e+++es +s+++++s  ++++t
  MMETSP0890-20130614|1882_1  53 LHDSCSSNLNSGTCQGMAYTDDAILclTQWLNKNDLTPECMAAlPEEKKKEQRVLDDdAKAKRDKRKRARAKAAEEVRKLNEQNSESSSSKKKNKSskKKKAT 155
                 66677777***************86225556666666665555444333333333323444444444444444444333222222222222222221133333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2099  (0.153525); expected 273.4 (0.02)
Passed bias filter:                      990  (0.0724108); expected 273.4 (0.02)
Passed Vit filter:                       149  (0.0108982); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.45s 00:00:01.07 Elapsed: 00:00:00.92
# Mc/sec: 427.18
//
Query:       MMETSP0890-20130614|1880_1  [L=1631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-87  293.3   0.0    1.3e-87  293.3   0.0    2.3  3  PF00176.18 SNF2 family N-terminal domain
    5.8e-15   54.8   0.0    2.1e-14   53.0   0.0    2.1  1  PF00271.26 Helicase conserved C-terminal domain
    6.4e-12   44.7   0.1    8.5e-11   41.0   0.0    2.9  2  PF11496.3  Class II histone deacetylase complex subunits 2 and 3
    1.6e-11   44.1  10.6    3.2e-09   36.8   1.5    3.2  2  PF00505.14 HMG (high mobility group) box
      1e-09   38.5   2.9      1e-09   38.5   2.0    3.3  3  PF09011.5  Domain of unknown function (DUF1898)
    3.6e-09   36.2   0.1    3.9e-08   32.9   0.0    2.8  2  PF09111.5  SLIDE
    2.1e-05   23.9   0.0    5.8e-05   22.4   0.0    1.8  1  PF00270.24 DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.095   12.6   0.0    2.3  1  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.7       1.6   2.8e+03     244     289 ..      43      93 ..      41      98 .. 0.67
   2 !  293.3   0.0   7.7e-91   1.3e-87       1     296 []     241     552 ..     241     552 .. 0.94
   3 ?   -2.9   0.3       1.2   2.1e+03     244     290 ..     896     942 ..     874     947 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.6
                 --HHHHHHHHHHHHH---------.....-----.....THHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18 244 lskeqkelYnklltkaravlkkav.....eaaeeevrlksvltelqqlrki 289
                 ls+e+k  Y++ + k++a +++++     +  ee+ r++  lte++ +r++
  MMETSP0890-20130614|1880_1  43 LSDEEKAQYEEEAAKDKARFERESkardlQVLEEQARKRAELTEMTDDRRC 93 
                 889999999999999999999988333333334444555556666666555 PP

  == domain 2    score: 293.3 bits;  conditional E-value: 7.7e-91
                 TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHH.STT--EEE-----HHHHHHHHHHS.--------SEEEE-TTHHHHTT...TT----EEEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH-------------.......-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHHHHHH---------..................-----......THHHHHHHHHHHHH-GGGS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  PF00176.18   1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekh.agalrvvvyhgqtrerskvaesmv.sakqlatadvvittYdvlkkekkeesllkkvewkrvvlDEahrlknsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelrvfekaferp..aeekskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYnklltkaravlkkav..................eaaeeevrlk.svltelqqlrkicnhpelv 296
                 yQ+e+++w++r++++++   +giLademGLGKTlq+i+l++  Lke+k+ ++p+Lv +P+s+l +W  e+e++ +g+lr v +hg+++er++  ++ +   +++++ dvvi tY+v++ e+    +l+k+ w++v++DEahr+kn++s  a+++++l++++rl++tGTP+qnnl+el+aLlnFl p+++ + ++f+++f+ +  +++ +k ++++l+kll+p++lrr+k+dvek+lppk+e+ll+  l+k+q++lY++ll+++ ++l +a                   ++ + ++ ++  + ++++qlrk+cnhp+l+
  MMETSP0890-20130614|1880_1 241 YQLECLNWMIRLWHHGM---NGILADEMGLGKTLQCISLLA-WLKEAKNIQGPHLVLAPKSTLGNWIGEFERWcPGELRAVRFHGSKQERKDFVDNILrPGETHREWDVVIATYEVANAER---IALEKIAWRFVIIDEAHRIKNEASLFARTARALRSERRLLVTGTPLQNNLHELWALLNFLLPDVFASSEQFDEWFNLDvdDNQAKKTMITQLHKLLRPFVLRRLKADVEKNLPPKTETLLFTGLTKQQRDLYRSLLKREARLLLSAQddvqesllpgaerdtddhDNTKGSGPSRtAISNIVMQLRKCCNHPYLF 552
                 9****************...*********************.*************************************************9999888889999*************9999...99**************************************************************************9966777788899********************************************988877666666666889999********99855566665555999*************986 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.2
                 --HHHHHHHHHHHHH--------------.....THHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18 244 lskeqkelYnklltkaravlkkaveaaeeevrlksvltelqqlrkic 290
                 ++++++ l+  l+ ++ra+++++  ++++++  ++  +  q l++ +
  MMETSP0890-20130614|1880_1 896 IESQEQALFGALVEEHRAMVEQSKTEQQQQKATNESTENGQALTESK 942
                 45677888889999999999998887777777766666666666555 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.2e-17   2.1e-14       5      78 .]     610     686 ..     606     686 .. 0.95

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1.2e-17
                 H----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   5 kkgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  +g+++++++g+++ ++r+e +e +na  s    +l++t++++ Gi+l+ +++ + +d +++++  +Q+++R++R+g
  MMETSP0890-20130614|1880_1 610 MRGYEYCRIDGNTSYDDRDELIEAYNAPGStkfVFLLSTRAGGLGINLQTADTCVLYDSDWNPQMDLQAMDRCHRIG 686
                 579***********************9988888******************************************87 PP

>> PF11496.3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     5e-14   8.5e-11       9     262 ..     478     717 ..     472     731 .. 0.78
   2 ?   -1.7   0.2      0.51   8.8e+02     155     219 ..    1091    1155 ..    1044    1157 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 5e-14
   PF11496.3   9 Ptpltelqkelteilvslhaesilkec.........eteskkediikleee..........tlkksiklllenlslvanHPsLlvdHymPkklllkeppeklaetSgKFevLndlinliidrkreeselkvvvisnsvkeldLiEglllGkklkykrlsgeslyeekkkvsenktkkstkekkkgkkkkqsaslwihlittdgltskdssllknakfdliisfDpsldtsspsieslrkqnrkk..npipiirlvvvnSieHaklcfkkkkekld 262
                  t+lt+ q++l+  l++ +a  +l+            +e++         +          +++  i  ++ +l+  +nHP+L    + ++ l    + e+l +t gK+++L +l+  +     +e+ ++v++ s+   +ld++E l++  + +y r++g+  y++  +              +  +   s++++  l+t +g    + +     + d  +  D++ +++ + ++ + + +r    +p+ ++rlv+ ++ie+   ++  kk kld
  MMETSP0890-20130614|1880_1 478 FTGLTKQQRDLYRSLLKREARLLLSAQddvqesllpGAERD---------TddhdntkgsgPSRTAISNIVMQLRKCCNHPYLF-PGVEDRTL--PPLGEHLVNTCGKLRLLDKLLAKL-----KERGNRVLIFSQMTMLLDILEDLMVMRGYEYCRIDGNTSYDDRDELI------------EAYNAPGSTKFVFLLSTRAGGLGINLQ-----TADTCVLYDSDWNPQMD-LQAMDRCHRIGqtKPVSVYRLVTAQTIEEKIVERAHKKLKLD 717
                 589*****************999988634433333322222.........13345667779999******************95.55666666..889*********************.....*******************************************9999............344555666666666666666653333.....66888888888888765.455544444423589999999999999998888888775555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.51
   PF11496.3  155 ekkkvsenktkkstkekkkgkkkkqsaslwihlittdgltskdssllknakfdliisfDpsldts 219 
                  + k  ++  t+ + ++ ++  +++++ +  i l+ ++++t +++ +  +++  +i s D+ ldt+
  MMETSP0890-20130614|1880_1 1091 TGKSEDKASTAMDFNDDDDDDDDDDDDDKPIILMGKQESTPTKKNDVVETTELMIASYDKALDTM 1155
                  444444444455566677777777777778889999999999999999999999******99986 PP

>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   1.5   1.9e-12   3.2e-09       5      67 ..       8      68 ..       6      70 .. 0.91
   2 !   10.6   1.0   0.00028      0.48      22      59 ..    1420    1457 ..    1411    1465 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.9e-12
                --HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGG CS
  PF00505.14  5 lsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpe 67
                 sa+ ++ ++q+a lk    dl   e +k++ge Wk+ls+eeK++Yee+a+k+k+++e+e ++
  MMETSP0890-20130614|1880_1  8 KSAYSFYTQAQHAALKGVVDDL--GERMKRIGESWKSLSDEEKAQYEEEAAKDKARFERESKA 68
                699************9999887..6779*******************************9876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00028
                  HSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHH CS
  PF00505.14   22 enPdlkvaeiskklgekWkelseeeKkpYeekaekeke 59  
                  e    ++a+i +++ + W ++++++K +Ye++ ++  +
  MMETSP0890-20130614|1880_1 1420 EKEAVRNAQILSIIQRLWDNEPDSVKDEYEARCRATEK 1457
                  4556789***********************99887665 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   2.0   6.1e-13     1e-09       7      69 ..       7      65 ..       5      66 .. 0.93
   2 ?   -2.7   0.3       4.4   7.6e+03      17      52 ..    1278    1312 ..    1272    1314 .. 0.70
   3 ?   -1.6   0.9         2   3.4e+03      26      67 ..    1419    1460 ..    1412    1463 .. 0.73

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 6.1e-13
   PF09011.5  7 krnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69
                +++AY ++    + ++++  + v   l+e +k ++e+Wk+ls+eeK +Yee+A++dk+r++re
  MMETSP0890-20130614|1880_1  7 AKSAYSFYT---QAQHAALKGVVD-DLGERMKRIGESWKSLSDEEKAQYEEEAAKDKARFERE 65
                68******9...678888888998.************************************99 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.4
   PF09011.5   17 tmrpelkregpqvpvglaevsklcsekWkalseeeK 52  
                  +++ ++ +e  + + +++e +kl+    +  +e++K
  MMETSP0890-20130614|1880_1 1278 EVKRKHEEEEAKLK-EINERIKLATDHFRRAKEKDK 1312
                  45566666667776.788888888888887777777 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 2
   PF09011.5   26 gpqvpvglaevsklcsekWkalseeeKekYeekAkedkkryd 67  
                    +++v+ a +   +   W + +++ K +Ye + ++  k+ +
  MMETSP0890-20130614|1880_1 1419 KEKEAVRNAQILSIIQRLWDNEPDSVKDEYEARCRATEKKSS 1460
                  3344467788888888999999*********98887665554 PP

>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.85   1.4e+03       5      38 ..    1040    1073 ..    1036    1075 .. 0.80
   2 !   32.9   0.0   2.3e-11   3.9e-08      49     112 ..    1171    1233 ..    1124    1254 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.85
   PF09111.5    5 ikrIekgeekiekkkeqekllkkkleqyknPlqe 38  
                  + +Ie+ge++i k ++ +  +++ + +++ P  +
  MMETSP0890-20130614|1880_1 1040 VTKIERGESEIAKNSKYRMGMRNLVLTVDPPTVQ 1073
                  689**********999888888777777777655 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 2.3e-11
   PF09111.5   49 kktyseeeDrflllmvyklGldkeglyekikeeirksplFrFDwflksRteqelsrRvetLlkl 112 
                   + +  +eDr+ll+ ++  G+ +++  +++  +ir+s++F +D f+ sR+eq+l +R++ L + 
  MMETSP0890-20130614|1880_1 1171 VRPFHRDEDRWLLCAADAAGVIDPDG-RDLLVKIRQSDRFVLDGFFLSRKEQQLTKRAQELARR 1233
                  4678899**************66655.566778**************************99875 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.4e-08   5.8e-05       9     138 ..     251     379 ..     239     409 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.4e-08
                 HHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH......T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   9 plilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl......dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsq 138
                 +l  +g + ++a e G GKTl   i +l  l+e   k+ +   l++aP   L + +  ++++++   +lr++  +g++++++d   ++      +++ d+v++T++       +  l+    r++++DEa+r+ ++
  MMETSP0890-20130614|1880_1 251 RLWHHGMNGILADEMGLGKTLQC-ISLLAWLKEA--KNIQGPHLVLAPKSTLGNWI-GEFERWCPG-ELRAVRFHGSKQERKDFVDNIlrpgetHREWDVVIATYEVANAE--RIALEKIAWRFVIIDEAHRIKNE 379
                 3333678889999*******975.5788888775..568889**********9866.578888865.8********999665555555899999889*********87765..334555669**********9983 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.6e-05     0.095       8     107 ..     260     384 ..     254     407 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.6e-05
   PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaae........................karvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt.......rlliiDEaqrLseealeel 107
                 ++  e G GKT+ +  l+ +l+e + ++                         + r+v++  +++   k++  ++l+  +     ++++ +++ a +e+++++r        r++iiDEa+r++ ea  + 
  MMETSP0890-20130614|1880_1 260 ILADEMGLGKTLQCISLLAWLKEAKNIQGphlvlapkstlgnwigeferwcpgELRAVRFHGSKQE-RKDFVDNILRPGE-----THREWDVVIATYEVANAERIalekiawRFVIIDEAHRIKNEASLFA 384
                 566688***************887777778888886555555555555554444444444444444.5555555554444.....467778887888888888779999*************964443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1496  (0.109421); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.60u 0.35s 00:00:02.95 Elapsed: 00:00:02.52
# Mc/sec: 1544.85
//
Query:       MMETSP0890-20130614|1881_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.9   0.7       0.17   11.7   0.1    2.0  2  PF12443.3 AT-hook-containing transcription factor


Domain annotation for each model (and alignments):
>> PF12443.3  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.055   7.5e+02      14      65 ..      74     123 ..      65     139 .. 0.63
   2 ?   11.7   0.1   1.3e-05      0.17      45      75 ..     149     179 ..     137     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.055
   PF12443.3  14 qeaLegEylkacrelsptpqkdasksssyifqkirelkae.iykLkeqleeLk 65 
                 ++ L++   k++r+  p +q    +  s ++   +e  a   +k+    ++L+
  MMETSP0890-20130614|1881_1  74 KKKLDDVAGKSVRKIEPPKQPSPNEKVSATLLASSEMHARgLQKMN---DQLR 123
                 5556666667777777777766666666666666666553234444...4444 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1.3e-05
   PF12443.3  45 qkirelkaeiykLkeqleeLkekvdetskei 75 
                 +++ + +aei +L e l+ L+ +v++ + +i
  MMETSP0890-20130614|1881_1 149 KERDHANAEILRLNEALDSLRLHVQQAENKI 179
                 5678999*******************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       769  (0.0562463); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.99
# Mc/sec: 595.46
//
Query:       MMETSP0890-20130614|1883_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-30  103.6   3.7    6.2e-20   71.2   0.2    2.9  3  PF12796.2  Ankyrin repeats (3 copies)
    2.8e-28   96.1   8.5    7.6e-10   37.9   0.2    5.0  4  PF00023.25 Ankyrin repeat
    1.6e-26   92.0   1.7    4.4e-12   46.0   0.2    4.2  4  PF13637.1  Ankyrin repeats (many copies)
      8e-25   86.1   9.1    4.7e-11   42.4   0.3    4.1  4  PF13857.1  Ankyrin repeats (many copies)
    2.5e-16   58.0   3.3    0.00014   21.6   0.1    4.9  4  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.069   12.7   0.0       0.11   12.0   0.0    1.4  1  PF04919.7  Protein of unknown function, DUF655


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.2   2.7e-23   6.2e-20      23      87 ..      17      80 ..       3      82 .. 0.89
   2 !   15.1   0.1   8.6e-06      0.02      40      68 ..      66      95 ..      66     109 .. 0.93
   3 !   32.3   0.2   3.7e-11   8.4e-08      24      89 .]      86     168 ..      81     168 .. 0.74

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 2.7e-23
   PF12796.2 23 vdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87
                v+ ++tpLh+Aa++g+l++++lLl++ga+++ak+++gntpL+lA+ ++++++v++L+ +gad+++
  MMETSP0890-20130614|1883_1 17 VT-KSTPLHIAAARGHLDCLELLLARGANIEAKNAYGNTPLMLACGANEFKCVEVLVAQGADISA 80
                33.789********************************************************986 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 8.6e-06
   PF12796.2 40 eivklLleagadvnakd.kegntpLhlAvr 68
                ++v++L+++gad+ a + k+ +t+Lh+A+ 
  MMETSP0890-20130614|1883_1 66 KCVEVLVAQGADISAVSsKKHETALHMAIA 95
                59***********999999*********85 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 3.7e-11
   PF12796.2  24 dlgetpLhlAa...eagnl...............eivklLleagadvnakdkegntpLhlAvrnghlelvklLlek....gadvnlrd 89 
                 +  et+Lh A+       +                +v++Ll++gad +a d++g tpLhl+v  ++ +++ lL+++    ga + ++d
  MMETSP0890-20130614|1883_1  86 H--ETALHMAIagiM---YtvrtsgissnpqtlvRVVDFLLQKGADADAADEDGATPLHLCVNVRNDDTLLLLVQSllakGAQITRKD 168
                 4..899999985540...3334444444455555********************************9987666665555598887775 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.2   3.3e-13   7.6e-10       4      32 ..      21      49 ..      19      50 .. 0.96
   2 !   32.1   0.0   2.4e-11   5.4e-08       1      31 [.      51      81 ..      51      83 .. 0.95
   3 !   14.5   0.1   8.9e-06      0.02       3      32 ..      87     131 ..      85     132 .. 0.92
   4 !   13.2   0.1   2.3e-05     0.053       1      32 [.     133     168 ..     133     169 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 3.3e-13
                BHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25  4 TPLHlAalrgnlevvklLlsqGAdlnaqd 32
                TPLH+Aa rg+l++++lLl +GA++ a++
  MMETSP0890-20130614|1883_1 21 TPLHIAAARGHLDCLELLLARGANIEAKN 49
                ***************************98 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 2.4e-11
                TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
  PF00023.25  1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31
                +G+TPL+lA+  +  ++v+ L+ qGAd+ a+
  MMETSP0890-20130614|1883_1 51 YGNTPLMLACGANEFKCVEVLVAQGADISAV 81
                6***************************997 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 8.9e-06
                 CBHHHHHHHTT...............HHHHHHHHHHTTSSTTHBH CS
  PF00023.25   3 fTPLHlAalrg...............nlevvklLlsqGAdlnaqd 32 
                 +T+LH+A+                   ++vv +Ll++GAd +a d
  MMETSP0890-20130614|1883_1  87 ETALHMAIAGImytvrtsgissnpqtLVRVVDFLLQKGADADAAD 131
                 69999988888999999999999999****************988 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 2.3e-05
                 TSCBHHHHHHHTTHHHHHHHHHH....TTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLls....qGAdlnaqd 32 
                 dG TPLHl++   n + + lL++    +GA ++ +d
  MMETSP0890-20130614|1883_1 133 DGATPLHLCVNVRNDDTLLLLVQsllaKGAQITRKD 168
                 8************77777777776666999887766 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.2   1.9e-15   4.4e-12       3      54 .]      21      72 ..      19      72 .. 0.97
   2 !   16.6   0.0   3.4e-06    0.0077      13      43 ..      64      95 ..      62      99 .. 0.91
   3 !   20.7   0.0   1.7e-07   0.00038      14      42 ..     114     142 ..     106     149 .. 0.92
   4 !   10.3   0.0   0.00032      0.74      16      39 ..     153     176 ..     145     177 .. 0.92

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.9e-15
   PF13637.1  3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54
                t+Lh aa+ g+l++++lLl++g++i +++++Gnt+L +A+ ++ +++++ L+
  MMETSP0890-20130614|1883_1 21 TPLHIAAARGHLDCLELLLARGANIEAKNAYGNTPLMLACGANEFKCVEVLV 72
                89**********************************************9985 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.4e-06
   PF13637.1 13 rlelvklLlekgidinrt.desGntaLhiAal 43
                  ++v+ L+++g+di ++  ++ +taLh A+ 
  MMETSP0890-20130614|1883_1 64 EFKCVEVLVAQGADISAVsSKKHETALHMAIA 95
                5789**************99**********85 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 1.7e-07
   PF13637.1  14 lelvklLlekgidinrtdesGntaLhiAa 42 
                 +++v +Ll+kg+d ++ de+G t+Lh+++
  MMETSP0890-20130614|1883_1 114 VRVVDFLLQKGADADAADEDGATPLHLCV 142
                 689***********************997 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00032
   PF13637.1  16 lvklLlekgidinrtdesGntaLh 39 
                 lv++Ll+kg++i r+d++G  +++
  MMETSP0890-20130614|1883_1 153 LVQSLLAKGAQITRKDINGKRPFD 176
                 79*****************99997 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.3   2.1e-14   4.7e-11      16      56 .]      19      59 ..      12      59 .. 0.94
   2 !   28.5   0.0   4.7e-10   1.1e-06       8      56 .]      44      93 ..      43      93 .. 0.94
   3 !   15.3   0.0   6.9e-06     0.016      30      55 ..     115     140 ..     113     141 .. 0.92
   4 !   23.6   0.1   1.7e-08     4e-05       1      55 [.     120     177 ..     120     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 2.1e-14
   PF13857.1 16 gntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56
                ++tpLh+Aa +g+l++++lLla+ga++ +++++g+t+l lA
  MMETSP0890-20130614|1883_1 19 KSTPLHIAAARGHLDCLELLLARGANIEAKNAYGNTPLMLA 59
                45************************************998 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 4.7e-10
   PF13857.1  8 dvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldlA 56
                ++ a + +gntpL+lA+ ++   +v+ L+a+gad+ +  s   +tal++A
  MMETSP0890-20130614|1883_1 44 NIEAKNAYGNTPLMLACGANEFKCVEVLVAQGADISAVSSKKhETALHMA 93
                56788999***************************************998 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 6.9e-06
   PF13857.1  30 evvrlLlapgadlnlrdsdgltaldl 55 
                  vv++Ll++gad+++ d+dg t+l+l
  MMETSP0890-20130614|1883_1 115 RVVDFLLQKGADADAADEDGATPLHL 140
                 699*********************98 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 1.7e-08
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl....apgadlnlrdsdgltaldl 55 
                 Ll++g ad++a de g tpLhl ++  + + + lL+    a+ga ++ +d +g +++dl
  MMETSP0890-20130614|1883_1 120 LLQKG-ADADAADEDGATPLHLCVNVRNDDTLLLLVqsllAKGAQITRKDINGKRPFDL 177
                 899**.77777888888********666666666666999*****************98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1     6e-08   0.00014       4      29 ..      21      46 ..      19      47 .. 0.95
   2 !   18.2   0.0   7.6e-07    0.0017       1      29 [.      51      79 ..      51      80 .. 0.96
   3 !    9.6   0.0   0.00047       1.1       3      29 ..      87     128 ..      85     129 .. 0.74
   4 ?    5.2   0.0     0.012        28       1      27 [.     133     163 ..     133     166 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6e-08
   PF13606.1  4 TpLhlAasngrielveaLlengadin 29
                TpLh+Aa +g+++ +e+Ll +ga+i 
  MMETSP0890-20130614|1883_1 21 TPLHIAAARGHLDCLELLLARGANIE 46
                9***********************96 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 7.6e-07
   PF13606.1  1 nGnTpLhlAasngrielveaLlengadin 29
                +GnTpL+lA+  +  + ve L+  gadi+
  MMETSP0890-20130614|1883_1 51 YGNTPLMLACGANEFKCVEVLVAQGADIS 79
                8**************************97 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00047
   PF13606.1   3 nTpLhlAas...........ngr....ielveaLlengadin 29 
                 +T+Lh+A+            + +    + +v++Ll++gad +
  MMETSP0890-20130614|1883_1  87 ETALHMAIAgimytvrtsgiSSNpqtlVRVVDFLLQKGADAD 128
                 799999988788787775553344444679*********976 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.012
   PF13606.1   1 nGnTpLhlAasngrie....lveaLlengad 27 
                 +G TpLhl +  ++ +    lv+ Ll +ga+
  MMETSP0890-20130614|1883_1 133 DGATPLHLCVNVRNDDtlllLVQSLLAKGAQ 163
                 688******9888877223245555556766 PP

>> PF04919.7  Protein of unknown function, DUF655
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.8e-05      0.11      11      79 ..      39     107 ..      34     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.8e-05
   PF04919.7  11 lpeGypddksreyrskpvvqalgereftLlelvpkkevdilkleevaigkgkrdkivsvkrkisyedLt 79 
                 l++G   + ++ y + p++ a g +ef+ +e+ + + +di   +  + +  ++  i+ +  +++   ++
  MMETSP0890-20130614|1883_1  39 LARGANIEAKNAYGNTPLMLACGANEFKCVEVLVAQGADISAVSSKKHETALHMAIAGIMYTVRTSGIS 107
                 67888999999*****************************99888777777777777666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:01.26
# Mc/sec: 450.74
//
Query:       MMETSP0890-20130614|1879_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   23.3   0.0    0.00011   21.8   0.0    1.8  1  PF12872.2 OST-HTH/LOTUS domain


Domain annotation for each model (and alignments):
>> PF12872.2  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.9e-09   0.00011      27      63 ..     270     306 ..     251     314 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 7.9e-09
                 TT---HHHHH-.TT--TTT-----HHHHHT-..TTEEE CS
   PF12872.2  27 sslgslyrkky.pdfdprnYGyskLsdLlkalpdlfei 63 
                 + l+++y+ +y +++d+r +G+ k+s++l a  d  e+
  MMETSP0890-20130614|1879_1 270 ANLPRQYNYRYhKTLDFRALGFLKMSQML-AKMDRIEV 306
                 689**************************.54677777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       961  (0.0702896); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.82
# Mc/sec: 1338.45
//
Query:       MMETSP0890-20130614|1884_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-38  130.6   0.0      3e-20   71.5   0.0    3.4  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    8.4e-29   99.2   0.0    1.1e-17   63.7   0.0    3.3  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    9.9e-25   86.0   0.0    1.4e-09   37.5   0.0    3.3  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0055   15.5   4.2     0.0083   15.0   2.9    1.4  1  PF13949.1  ALIX V-shaped domain binding to HIV
  ------ inclusion threshold ------
      0.011   15.4   0.5      0.051   13.3   0.0    2.3  2  PF08777.6  RNA binding motif
      0.038   13.4   0.1        2.4    7.6   0.0    3.0  3  PF13689.1  Domain of unknown function (DUF4154)
      0.081   12.8   5.2        0.2   11.5   3.6    1.7  1  PF10735.4  Protein of unknown function (DUF2526)
       0.12   10.9   6.8       0.19   10.2   4.7    1.2  1  PF08317.6  Spc7 kinetochore protein
        0.4   10.3  13.2       0.66    9.6   9.2    1.3  1  PF07926.7  TPR/MLP1/MLP2-like protein
       0.46    9.2   8.0       0.64    8.7   5.6    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        1.7    8.0  12.1        2.9    7.3   8.4    1.3  1  PF04156.9  IncA protein
        1.9    7.9   8.1        3.3    7.2   5.6    1.3  1  PF03962.10 Mnd1 family
        2.3    8.6   7.6        2.1    8.8   2.7    2.4  2  PF05639.6  Pup-like protein


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.3e-13   1.4e-10      15      70 .]       2      54 ..       1      54 [. 0.94
   2 !   71.5   0.0   2.8e-23     3e-20       1      60 [.      79     139 ..      79     147 .. 0.94
   3 !   14.8   0.0   1.4e-05     0.015      16      69 ..     266     318 ..     261     319 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.3e-13
                HHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17 15 LkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70
                L+ +F++fGpi++i+lv+     + ++afV+F +e +ae+A++ ++g++++gr+l+
  MMETSP0890-20130614|1884_1  2 LRSIFGHFGPIVDIRLVSG--PGNGPYAFVDFSTELAAEAAMS-MDGQEFDGRRLR 54
                99****************5..77889*****************.*********986 PP

  == domain 2    score: 71.5 bits;  conditional E-value: 2.8e-23
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealn 60 
                 ++Vgn+ p++ e+eL+ +F++fG++ +i++v+d  tg+ +gfafV+F+++++a++A+++ +
  MMETSP0890-20130614|1884_1  79 VYVGNIAPSTPESELRAYFENFGQVSEIQMVKDrTTGQFRGFAFVRFHDQDSAQAAVAKAP 139
                 7********************************************************9765 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 1.4e-05
                 HHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  16 kelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +   s fG++ s+k+    +  s    fVeF s   a++A e+l  ++++gr+l
  MMETSP0890-20130614|1884_1 266 RATCSAFGEVASVKVAV-PRVVSPQPVFVEFRSGIHAAAAAENLASRTYDGRQL 318
                 667899****9999999.8999******************************87 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.6e-09   2.7e-06      15      69 .]       2      54 ..       1      54 [. 0.90
   2 !   63.7   0.0     1e-20   1.1e-17       1      66 [.      79     145 ..      79     148 .. 0.97
   3 ?    4.7   0.0     0.025        27      42      68 ..     291     318 ..     266     318 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.6e-09
   PF14259.1 15 lreffspygkvegvriprnkdgrg.rgfAfvefeseedAqkalkklnlvlkgrtir 69
                lr +f+ +g++ ++r++  +   g   +Afv+f++e +A++a+ + ++ ++gr +r
  MMETSP0890-20130614|1884_1  2 LRSIFGHFGPIVDIRLVSGP---GnGPYAFVDFSTELAAEAAMSMDGQEFDGRRLR 54
                899**************864...41558*************************997 PP

  == domain 2    score: 63.7 bits;  conditional E-value: 1e-20
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgr 66 
                 +yv+++ ps+ e++lr+ f+++g v++++++++++ g++rgfAfv f ++++Aq+a++k +++l gr
  MMETSP0890-20130614|1884_1  79 VYVGNIAPSTPESELRAYFENFGQVSEIQMVKDRTtGQFRGFAFVRFHDQDSAQAAVAKAPHNLYGR 145
                 8**************************************************************9998 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.025
   PF14259.1  42 AfvefeseedAqkalkkln.lvlkgrti 68 
                  fvef+s  +A +a ++l     +gr +
  MMETSP0890-20130614|1884_1 291 VFVEFRSGIHAAAAAENLAsRTYDGRQL 318
                 6****************97799999975 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   1.2e-11   1.3e-08       1      54 [.       2      56 ..       2      58 .. 0.93
   2 !   37.5   0.0   1.3e-12   1.4e-09       1      54 [.      93     150 ..      93     152 .. 0.94
   3 !   10.3   0.0   0.00041      0.43       4      53 ..     268     320 ..     266     321 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 1.2e-11
   PF13893.1  1 LyklfskfGkverikifrkk..ggqAfvefdtveaArkakeylngvklygktLkve 54
                L+ +f  fG++++i++      g +Afv f+t+ aA+ a++ ++g+ ++g++L+ve
  MMETSP0890-20130614|1884_1  2 LRSIFGHFGPIVDIRLVSGPgnGPYAFVDFSTELAAEAAMS-MDGQEFDGRRLRVE 56
                688999**********9777889*****************6.*************8 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 1.3e-12
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 L+++f++fG+v +i + ++      +g+Afv f++ ++A+ a+++  +++lyg+ L+v 
  MMETSP0890-20130614|1884_1  93 LRAYFENFGQVSEIQMVKDRttgqfRGFAFVRFHDQDSAQAAVAKA-PHNLYGRILNVA 150
                 789*********************99*****************875.679******995 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00041
   PF13893.1   4 lfskfGkverikifrkk...ggqAfvefdtveaArkakeylngvklygktLkv 53 
                  +s fG+v ++k+       +  +fvef +   A  a e+l  + ++g++L v
  MMETSP0890-20130614|1884_1 268 TCSAFGEVASVKVAVPRvvsPQPVFVEFRSGIHAAAAAENLASRTYDGRQLVV 320
                 68999***999997666798899**************************9977 PP

>> PF13949.1  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.9   7.9e-06    0.0083      81     164 ..     367     450 .]     295     450 .] 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.9e-06
                 HHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHTSSHHHHHHHS------SSG---HHHHHHHHHHHHHHHHHHHT---H CS
   PF13949.1  81 elreelrkyrealeeAsesDsqlrskleeieedlelLsspeeeleaslpssspeksdevseqikrlrelleklnelkaeRakll 164
                 + r++l++ ++  e+  +  + lr  l  + ++ +lL++  +ele+ l + + + + + + +++r++ l+e+ + l+aeR+++l
  MMETSP0890-20130614|1884_1 367 DTRRQLERAQDDREKRETEKARLRADLAHHAAQHKLLQARVDELEDELDKARASAKKDREYHAARVKALTERTEALEAERDNVL 450
                 567788888888888889999*******************************988888899********************986 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.8e-05     0.051      11      58 ..      86     139 ..      79     149 .. 0.83
   2 ?   -2.0   0.1       2.7   2.9e+03      72      88 ..     370     386 ..     357     422 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.8e-05
                 SS--HHHHHHHT-----EEEE----------......EEESS-..HHHH---TT CS
   PF08777.6  11 kelsredikelfsklgevkyvdfkegdkege......vrFkedeaakkalekat 58 
                   ++ +++++ f+++g+v  + + ++ ++g+      vrF+++++a++a++ka 
  MMETSP0890-20130614|1884_1  86 PSTPESELRAYFENFGQVSEIQMVKDRTTGQfrgfafVRFHDQDSAQAAVAKAP 139
                 5667999*********99999999999998655555599***********9985 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.7
                 -EEE-----HHHHHHHH CS
   PF08777.6  72 vtlellegeeEkeylkk 88 
                  +le  ++++Ek++ +k
  MMETSP0890-20130614|1884_1 370 RQLERAQDDREKRETEK 386
                 44444444444443333 PP

>> PF13689.1  Domain of unknown function (DUF4154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.21   2.2e+02      39      64 ..      37      62 ..      22      96 .. 0.75
   2 ?    7.6   0.0    0.0023       2.4      39      82 ..     302     345 ..     286     355 .. 0.88
   3 ?   -0.0   0.1      0.52   5.4e+02      25      65 ..     397     437 ..     388     444 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.21
   PF13689.1 39 aeaLsklagkkvagrplevrrlssas 64
                aea  +++g+++ gr+l+v+r ++a+
  MMETSP0890-20130614|1884_1 37 AEAAMSMDGQEFDGRRLRVERAKKAD 62
                45666899*************97665 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0023
   PF13689.1  39 aeaLsklagkkvagrplevrrlssaseaagcdvlyvgssesael 82 
                 a+a ++la+++  gr+l vrrl  ++ +++++ +y+ s++++  
  MMETSP0890-20130614|1884_1 302 AAAAENLASRTYDGRQLVVRRLTRQELLSEIEDFYLRSQSTTAP 345
                 56778999****************************99988765 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.52
   PF13689.1  25 asplrlcvvgedefaeaLsklagkkvagrplevrrlssase 65 
                 a++ +l   + de++++L+k++    ++r+ ++ r++  +e
  MMETSP0890-20130614|1884_1 397 AAQHKLLQARVDELEDELDKARASAKKDREYHAARVKALTE 437
                 567777778889999*****999999999999999976554 PP

>> PF10735.4  Protein of unknown function (DUF2526)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.6   0.00019       0.2      34      66 ..     375     406 ..     361     418 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00019
   PF10735.4  34 aqlsreerydqqqrlrtaiahhGrqhkedrear 66 
                 aq  re+r + + rlr+ +ahh  qhk  + ar
  MMETSP0890-20130614|1884_1 375 AQDDREKRETEKARLRADLAHHAAQHKLLQ-AR 406
                 8889**********************9543.44 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.7   0.00018      0.19     206     291 ..     360     445 ..     350     447 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
   PF08317.6 206 cdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeisklkekvsllekl 291
                 + +++le+ r +L+  +++ e+++ + + l+++l +++++ + l+  + el++e+ +a+   +++r+++a  ++ l+e++++le +
  MMETSP0890-20130614|1884_1 360 HFQDQLEDTRRQLERAQDDREKRETEKARLRADLAHHAAQHKLLQARVDELEDELDKARASAKKDREYHAARVKALTERTEALEAE 445
                 558899999******9999999999999999999999999999999*********************************9999975 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.2   0.00063      0.66      26     116 ..     358     448 ..     353     450 .] 0.93

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00063
   PF07926.7  26 iqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkiee 116
                 +++ +d+le+ +++++ aqd+ e+  +++a+    L    +++++lq+ ++el++e+d+a+a+ ++ +e    + ++L +  + le  +++
  MMETSP0890-20130614|1884_1 358 ARHFQDQLEDTRRQLERAQDDREKRETEKARLRADLAHHAAQHKLLQARVDELEDELDKARASAKKDREYHAARVKALTERTEALEAERDN 448
                 6789*****************************************************************9999999999999999887776 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.6   0.00061      0.64      53     130 ..     359     444 ..     310     450 .] 0.52

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00061
   PF10186.4  53 e........kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikr 130
                          +++++++ + ++++++ + +++r+ +++  ++ + +++r++el+++l++ r ++++  +  + r + l + +e+++ 
  MMETSP0890-20130614|1884_1 359 RhfqdqledTRRQLERAQDDREKRETEKARLRADLAHHAAQHKLLQARVDELEDELDKARASAKKDREYHAARVKALTERTEALEA 444
                 04444444455555555555555555555555555555555555555555555555555555554444444444444444433333 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.4    0.0027       2.9      99     169 ..     360     430 ..     357     449 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0027
   PF04156.9  99 qleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrseler 169
                 +++ +l+++ ++le  ++d+e+ ++e+ +l++ l   + ++k l++++ el++e+ ++++++++ r+  ++
  MMETSP0890-20130614|1884_1 360 HFQDQLEDTRRQLERAQDDREKRETEKARLRADLAHHAAQHKLLQARVDELEDELDKARASAKKDREYHAA 430
                 799*************************************************9999998888888775433 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.6    0.0031       3.3      72     149 ..     359     444 ..     349     449 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0031
  PF03962.10  72 eklkkeleelkqrikelqaeiekekkkreet........eereelleelkeleeelkklkkeleklakldpekveklkeetevake 149
                 ++ + +le+++++++++q++ ek+++++           ++++ l+ +++ele+el+k +++ +k ++   ++v+ l+e te + +
  MMETSP0890-20130614|1884_1 359 RHFQDQLEDTRRQLERAQDDREKRETEKARLradlahhaAQHKLLQARVDELEDELDKARASAKKDREYHAARVKALTERTEALEA 444
                 55666666666666666666666655444445566666455556778899999999999999999999999999999998887654 PP

>> PF05639.6  Pup-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.7     0.002       2.1      11      50 ..     375     416 ..     366     420 .. 0.74
   2 ?    0.8   0.1       0.6   6.3e+02      19      45 ..     424     450 .]     416     450 .] 0.46

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.002
   PF05639.6  11 qdetrreeeveee..aeaeadvkerkekltedvDdlLDEIDd 50 
                  +++r++ e+e++    + a+ +++++ l++ vD+l DE+D 
  MMETSP0890-20130614|1884_1 375 AQDDREKRETEKArlRADLAHHAAQHKLLQARVDELEDELDK 416
                 3444444444444558999999******************96 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.6
   PF05639.6  19 eveeeaeaeadvkerkekltedvDdlL 45 
                 + e +a   + + er e+l+++ D++L
  MMETSP0890-20130614|1884_1 424 DREYHAARVKALTERTEALEAERDNVL 450
                 333334444455555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       961  (0.0702896); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:01.07
# Mc/sec: 1007.81
//
Query:       MMETSP0890-20130614|1887_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-38  129.6  30.0    1.8e-09   36.8   2.3    7.3  8  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
    4.4e-36  122.7   8.7    8.5e-08   32.1   0.0    7.5  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.18   1.3e+03       9      21 ..     109     121 ..     107     123 .. 0.86
   2 ?   -3.4   0.0       1.1   7.2e+03      18      26 ..     144     152 ..     142     153 .. 0.75
   3 !   36.8   2.3   2.7e-13   1.8e-09       1      30 []     173     202 ..     173     202 .. 0.98
   4 !   11.9   0.1   1.8e-05      0.12       4      25 ..     228     249 ..     226     254 .. 0.92
   5 !   31.0   0.0   1.8e-11   1.2e-07       1      27 [.     280     306 ..     280     314 .. 0.93
   6 !   33.7   0.3   2.5e-12   1.7e-08       2      30 .]     342     370 ..     341     370 .. 0.97
   7 !   13.1   0.1   7.1e-06     0.049       2      25 ..     394     417 ..     393     424 .. 0.89
   8 !   18.7   0.2   1.3e-07   0.00087       4      30 .]     469     495 ..     466     495 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.18
                 --EEEE-.---EE CS
   PF13540.1   9 yHtcaLtsdGaVl 21 
                  H ++++++ +++
  MMETSP0890-20130614|1887_1 109 AHGVVIMDNDELR 121
                 6*******99986 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.1
                 --EEEE--- CS
   PF13540.1  18 GaVlcWGsN 26 
                 +aVl WG N
  MMETSP0890-20130614|1887_1 144 NAVLQWGYN 152
                 56777**99 PP

  == domain 3    score: 36.8 bits;  conditional E-value: 2.7e-13
                 --EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 V+++s+G+ H ca++++G+ ++WGsN++GQ
  MMETSP0890-20130614|1887_1 173 VIALSCGWLHCCAVLDSGKAVAWGSNEFGQ 202
                 89***************************9 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 1.8e-05
                 EE-----EEEE-.---EEEE-- CS
   PF13540.1   4 vsaGgyHtcaLtsdGaVlcWGs 25 
                 v++G+y+t  L++ G++++WG+
  MMETSP0890-20130614|1887_1 228 VACGAYFTNTLDAQGTLYSWGR 249
                 9********************6 PP

  == domain 5    score: 31.0 bits;  conditional E-value: 1.8e-11
                 --EEE-----EEEE-.---EEEE---T CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNs 27 
                 +++++aG  Ht++Lt++G++++WG N+
  MMETSP0890-20130614|1887_1 280 IKAIAAGEAHTIVLTESGKLFSWGYNE 306
                 789**********************96 PP

  == domain 6    score: 33.7 bits;  conditional E-value: 2.5e-12
                 -EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 ++++aGg H+c+++++G+++++GsN  GQ
  MMETSP0890-20130614|1887_1 342 KAIAAGGLHSCVIDANGTLFAFGSNHEGQ 370
                 79**************************9 PP

  == domain 7    score: 13.1 bits;  conditional E-value: 7.1e-06
                 -EEE-----EEEE-.---EEEE-- CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWGs 25 
                 +sv +G+y t+aLt+dG  + +Gs
  MMETSP0890-20130614|1887_1 394 KSVYCGRYSTLALTEDGNAFFFGS 417
                 7999*************9998886 PP

  == domain 8    score: 18.7 bits;  conditional E-value: 1.3e-07
                 EE-----EEEE-.---EEEE---TTST CS
   PF13540.1   4 vsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                  + G  H++ L s++ + +WG N +GQ
  MMETSP0890-20130614|1887_1 469 AALGEAHAILLSSNNYLQGWGYNAYGQ 495
                 56799*********************9 PP

>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0     4e-05      0.28      22      51 .]     157     186 ..     146     186 .. 0.91
   2 !   32.1   0.0   1.2e-11   8.5e-08       6      48 ..     194     235 ..     189     238 .. 0.93
   3 ?    3.2   0.1     0.013        91       2       9 ..     242     249 ..     241     252 .. 0.88
   4 ?    3.4   0.0     0.012        83      36      51 .]     278     293 ..     252     293 .. 0.83
   5 !   31.7   0.0   1.7e-11   1.2e-07       1      51 []     296     354 ..     296     354 .. 0.94
   6 !   28.6   0.0   1.5e-10   1.1e-06       1      51 []     357     406 ..     357     406 .. 0.98
   7 !   10.5   0.0   7.1e-05      0.49       6      49 ..     487     539 ..     485     541 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4e-05
                 ----S-EE-GGG------EEE-----EEEE CS
  PF00415.13  22 envlvPvkveglsgvrvvqvacGgsHtlal 51 
                 +++l P +v+ l ++rv++ +cG+ H++a+
  MMETSP0890-20130614|1887_1 157 SERLAPGPVTALDRKRVIALSCGWLHCCAV 186
                 67888999********************97 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 1.2e-11
                 EE---------.--------S-EE-GGG------EEE-----E CS
  PF00415.13   6 sWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHt 48 
                 +WG n++GqLG +g+e++   Pv+ +  ++ r   vacG+++t
  MMETSP0890-20130614|1887_1 194 AWGSNEFGQLG-TGDERKSPSPVLCAVDPKARLARVACGAYFT 235
                 8**********.************99999999*********98 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.013
                 TEEEEE-- CS
  PF00415.13   2 GrVysWGr 9  
                 G +ysWGr
  MMETSP0890-20130614|1887_1 242 GTLYSWGR 249
                 99*****8 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.012
                 ----EEE-----EEEE CS
  PF00415.13  36 vrvvqvacGgsHtlal 51 
                 + ++++a+G  Ht++l
  MMETSP0890-20130614|1887_1 278 QIIKAIAAGEAHTIVL 293
                 67999********986 PP

  == domain 5    score: 31.7 bits;  conditional E-value: 1.7e-11
                 TTEEEEE---------....--------S-EE-GGG--.....----EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLG...kggseenvlvPvkveglsg.....vrvvqvacGgsHtlal 51 
                 +G+++sWG n++ qLG   k+ + + + +P+ +e ls       +++++a+Gg H++++
  MMETSP0890-20130614|1887_1 296 SGKLFSWGYNEQWQLGrgqKEIEHQGQQKPKELEILSQhpkfvSPAKAIAAGGLHSCVI 354
                 69**************8888888888999***************************997 PP

  == domain 6    score: 28.6 bits;  conditional E-value: 1.5e-10
                 TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 +G ++++G n++Gq G +   +    P++v++ ++++ ++v cG + tlal
  MMETSP0890-20130614|1887_1 357 NGTLFAFGSNHEGQIG-HVIRQAIADPQPVSSMQSEKCKSVYCGRYSTLAL 406
                 699*************.********************************97 PP

  == domain 7    score: 10.5 bits;  conditional E-value: 7.1e-05
                 EE-------.--..--------S-EE-GGG--......----EEE.-----EE CS
  PF00415.13   6 sWGrndyGq.LG.kggseenvlvPvkveglsg......vrvvqva.cGgsHtl 49 
                 +WG n yGq LG ++ +++   +P+ ++++s         + ++a +Gg+ tl
  MMETSP0890-20130614|1887_1 487 GWGYNAYGQaLGvLDSTTDIIDTPRHLNLPSEhfdpatSMILDMAaAGGTSTL 539
                 6*******99*********************9998888777777756776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:01.02
# Mc/sec: 1308.60
//
Query:       MMETSP0890-20130614|1889_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-13   48.0   0.0    4.7e-06   26.0   0.0    3.1  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      1e-12   47.5   0.0    2.3e-05   23.9   0.0    3.4  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    2.6e-06   27.2   0.0    0.00036   20.3   0.0    2.5  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     1e-09   4.7e-06       2      67 ..     151     212 ..     150     215 .. 0.89
   2 !   17.9   0.0   3.4e-07    0.0016      12      66 ..     282     332 ..     281     335 .. 0.90
   3 ?   -0.6   0.0       0.2   9.1e+02      17      69 ..     421     472 ..     416     473 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1e-09
                 EEESSTTTS.SHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTE CS
  PF00076.17   2 fVgnLppdv.teeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggr 67 
                 +V++Lp ++ +e  L++lF ++G+++++k+++d     +  a + F++ +++  +++ ln   l++ 
  MMETSP0890-20130614|1889_1 151 YVSGLPASYqNEPTLRQLFDQYGKVTKVKMYPD-----QASALIVFAEVSSVHLVIKGLNSSLLDNI 212
                 99***776625669*******************.....**********************9998875 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETT CS
  PF00076.17  12 eeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklgg 66 
                 e e+ +  s +G++  +  ++     + g+  V+Fe+  +ae ++ a+ng+ +++
  MMETSP0890-20130614|1889_1 282 EAEIGQECSRYGSVLAVHAPK----AHPGCVAVTFETIKAAEICVHAMNGRWFDN 332
                 5677788899****9999999....6**************************998 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.2
                 HHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  17 elFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +   k+G+   +k  + e     g     F+s ++  ++   ++g+ ++ r+l
  MMETSP0890-20130614|1889_1 421 QECTKYGDLIAVKTLP-ELPEMFGSILLAFASDDARHRCSLDMDGRWFDFRRL 472
                 5566777777777777.466667777889999999999999999999887766 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-07    0.0014       1      53 [.     165     216 ..     165     219 .. 0.90
   2 !   23.9   0.0   5.2e-09   2.3e-05       4      48 ..     288     332 ..     287     337 .. 0.95
   3 ?    0.8   0.0     0.087     4e+02       2      54 ..     420     475 ..     419     477 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3e-07
   PF13893.1   1 LyklfskfGkverikifrkkggqAfvefdtveaArkakeylngvklygktLkv 53 
                 L++lf ++Gkv+++k+ ++    A++ f+ v++   +++ ln  +l++  + v
  MMETSP0890-20130614|1889_1 165 LRQLFDQYGKVTKVKMYPDQ-ASALIVFAEVSSVHLVIKGLNSSLLDNINISV 216
                 799***************99.*************9999999988888766655 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 5.2e-09
   PF13893.1   4 lfskfGkverikifrkkggqAfvefdtveaArkakeylngvklyg 48 
                  +s++G v  ++  + ++g++ v+f+t++aA+ ++ ++ng+++++
  MMETSP0890-20130614|1889_1 288 ECSRYGSVLAVHAPKAHPGCVAVTFETIKAAEICVHAMNGRWFDN 332
                 69*****************************************97 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.087
   PF13893.1   2 yklfskfGkverikifrkk...ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 y+ + k+G+ + +k +++    +g  +  f++ +a  ++   ++g++++ ++L+++
  MMETSP0890-20130614|1889_1 420 YQECTKYGDLIAVKTLPELpemFGSILLAFASDDARHRCSLDMDGRWFDFRRLRIQ 475
                 78899999998888877546666666666777666666666777777777777775 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.9e-08   0.00036       2      65 ..     151     211 ..     151     215 .. 0.86
   2 !    4.2   0.0    0.0087        40      13      65 ..     283     332 ..     281     335 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 7.9e-08
   PF14259.1   2 yvrglppsvte.edlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkg 65 
                 yv+glp s ++   lr++f +ygkv++v++ ++        A++ f+   ++  ++k ln   l++
  MMETSP0890-20130614|1889_1 151 YVSGLPASYQNePTLRQLFDQYGKVTKVKMYPD-----QASALIVFAEVSSVHLVIKGLNsSLLDN 211
                 89*****987768*******************9.....57******99999999998887666665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0087
   PF14259.1  13 edlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkg 65 
                 +++ +  s+yg+v  v+ p+      +g   v+fe+ ++A+ ++ ++n  ++++
  MMETSP0890-20130614|1889_1 283 AEIGQECSRYGSVLAVHAPKA----HPGCVAVTFETIKAAEICVHAMNgRWFDN 332
                 567777799**********96....599999*************9999899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.68
# Mc/sec: 1906.51
//
Query:       MMETSP0890-20130614|1892_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.63
# Mc/sec: 1080.26
//
Query:       MMETSP0890-20130614|1897_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 264.43
//
Query:       MMETSP0890-20130614|1895_1  [L=774]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-39  135.2   0.0    2.6e-39  134.6   0.0    1.2  1  PF01031.15 Dynamin central region
    2.4e-16   59.8   0.1    4.8e-16   58.8   0.0    1.5  1  PF00350.18 Dynamin family
    7.7e-08   32.0   0.3    1.8e-07   30.8   0.2    1.7  1  PF02212.13 Dynamin GTPase effector domain
  ------ inclusion threshold ------
      0.052   11.4   0.0      0.072   11.0   0.0    1.1  1  PF03718.8  Glycosyl hydrolase family 49


Domain annotation for each model (and alignments):
>> PF01031.15  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   7.6e-43   2.6e-39       1     279 [.     119     403 ..     119     418 .. 0.90

  Alignments for each domain:
  == domain 1    score: 134.6 bits;  conditional E-value: 7.6e-43
                 XHHHHXXXXSXXXXXXXXXXXXXHHHHCSSXXCCCHHHHHHHHHHTXTTGGG.CGGGX..XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXX.-HHHHHHHHHHHHHHHHHHHHHHHH------....------HHHHHHHHHHHHHHHHHHHHH-.--HHHHHHHHHHH-----------TTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHT.S------- CS
  PF01031.15   1 avdiLenevipLklGYvgVvnRsQkdinekkslkealekEreFFenhpsyrt.laerc..gtpyLakkLnkeLvehIrksLPdlkeqinkklqetekeLekyGesvp.edeeeklalllelitkFsedfkslieGeedkel..stkelsggariryiFnelfekllkkldp.leklsdeeirtairnsrGrelplFvpekaFellvkkqikrLeepalkcvelvyeelekivkkvlskelkrfpnLkeeikevvedllreqleeteklvenlidmelayintnhpd 279
                 + ++L+n+  pL+lGY  V++RsQ++ ++k +l++a+++Er+FF+nhp +++  +e++  g+  L+k+L+ +Lve+Ir  LP++k +++ + + t+ke +++G +++ +d+++  a ++++i ++++ ++++ +G++ + +  +  el+++ + ++iF++l ++   + +   +++  e     +   rGrelp+F++ + F   + ++i++ ++ + +c +  +   + +++++++    ++p L  ei++ +  ++++  +   + + ++++ e+   +t +++
  MMETSP0890-20130614|1895_1 119 VCEVLANRRKPLRLGYHMVKCRSQRELDAKSTLTDAMRAERTFFDNHPIWSKeDKEKKktGIIALTKRLSILLVERIRVALPSIKYELQLQRELTTKEFKRLGGETAaSDANQMRAEVVRVIAEYTTLLRQSARGNYGNAMlaKRAELRLFGEAQTIFRSLKDEVAATQPRfEDSIFIERLTAEMAAFRGRELPGFTNSQVFYGFMVQNIEQWRPWVEDCRQHYVAAARAVSDNLAQALAPTYPALAVEIRQRAHGIMDRYGDVVAEKLDDVFAKESDPYTT-NES 403
                 679************************************************987665511669***************************************887774777777889********************9833469*****************999998866615567788888889999************************************************************************9999999999999999855444.444 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.4e-19   4.8e-16      81     167 ..      11     107 ..       2     108 .. 0.95

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.4e-19
                 -------SS-EEEEEEETTS-SEEEEE------------.........HHHHHHH.STTEEEEEEEETTS-STT-SHHHHHHHH------EE-EEE- CS
  PF00350.18  81 gankgiskkvillkilsllvkgltlvDtPGldsvnkrdq.........elveeyi.kkadiilavtdanhdlstsealflarevdpkgkrtivVltk 167
                 ++++g+s++ i+++  s+ v++ltl D+PG+ ++ +  q         +l+e+y+ ++++i+lav++an+d++t + l+ a  +dp g+rt+ Vltk
  MMETSP0890-20130614|1895_1  11 NTKNGFSTDSIVVELSSPEVPDLTLLDLPGIVRTTVSGQdtsvvrdvnDLIESYLgQERTIVLAVMPANQDIATIDILERAARADPAGERTLAVLTK 107
                 468899999************************99999999*******************************************************9 PP

>> PF02212.13  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.2   5.4e-11   1.8e-07       4      92 .]     465     559 ..     462     559 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 5.4e-11
  PF02212.13   4 ieieeiklllksYfdivrkniedqvPkaImhflvnetkeelqne...llrkLykeel...leelLqEddevaekRkelkerlevLkqAlrildel 92 
                 +++e + +ll++Y+d+++k++ d+v ++  h + n + +e++ne   + ++  + e+   l++l++Ed++++e R+  k + ++L+qAl+ ++++
  MMETSP0890-20130614|1895_1 465 SKVEDMCTLLQAYWDVATKRLVDNVCMTLEHDFTNAVLKEVENEcflFAAEYSNPEKeldLQRLFREDPAIVELRRAAKAKEKRLTQALEAIKQF 559
                 6789999************************************96634445554454888*******************************9986 PP

>> PF03718.8  Glycosyl hydrolase family 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.1e-05     0.072     285     377 ..     373     462 ..     358     481 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.1e-05
                 ---B----S-TTEETT-TTEE...S---TTTB--SEEES-----EEEEE---EEE--SS-SEEE-----GGEEEEEEEEEEE---STT----B CS
   PF03718.8 285 hGvlsGeqyvyeadtdesyikasgaaksdstslkmlefasadaeqtldleGvtvsaPPfnsldvsGnsldliesrvddykqvGafyfqtdGle 377
                 hG++     v     d+ + k s    ++++ l +++    + + +l l+ v  saPP   +  + n +++ +++v+   q+G +y+qt G++
  MMETSP0890-20130614|1895_1 373 HGIMDRYGDVVAEKLDDVFAKESDPYTTNESMLELINR-IRQKNFELALKAVISSAPPGSMMASNQNAKNTAKTHVK--HQLGRWYMQTHGVN 462
                 55555555555555666666677666666665555544.344556789999999****9999999998877777776..6***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.20u 0.38s 00:00:01.58 Elapsed: 00:00:01.46
# Mc/sec: 1270.40
//
Query:       MMETSP0890-20130614|1896_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 813.41
//
Query:       MMETSP0890-20130614|1899_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-19   68.0   0.0    2.2e-13   49.3   0.0    1.7  2  PF13475.1 Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.7e-09   9.2e-05      17      42 ..       1      26 [.       1      28 [. 0.92
   2 !   49.3   0.0   1.6e-17   2.2e-13       1      44 [.      10      53 ..      10      53 .. 0.99

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 6.7e-09
   PF13475.1 17 kylseeLknDkeivlkAvkqngsals 42
                +y+ +eL +D+eivl  v+++gsal+
  MMETSP0890-20130614|1899_1  1 EYAADELMSDREIVLCGVRKCGSALR 26
                5899********************97 PP

  == domain 2    score: 49.3 bits;  conditional E-value: 1.6e-17
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsya 44
                DrEivl  v+k+gsal+++ +eLk+D eivl+Av+++g+a++ya
  MMETSP0890-20130614|1899_1 10 DREIVLCGVRKCGSALRKAADELKSDHEIVLAAVQSYGYAMEYA 53
                9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|1904_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-11   43.2   0.5    1.8e-08   33.7   0.0    2.2  2  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-12   1.8e-08       1      40 [.       6      45 ..       6      46 .. 0.97
   2 !    8.0   0.0   0.00017       2.3       1      16 [.      47      62 .]      47      62 .] 0.91

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.3e-12
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                +++n +++ eaGa+ppLv+LL++g +  +e++a+AL+ La
  MMETSP0890-20130614|1904_1  6 NDKNQETIAEAGAIPPLVNLLTCGTTFAKENSAGALWSLA 45
                789************************************8 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00017
                CHHHHHHHHHCHHHHH CS
  PF00514.18  1 spenkqavieaGavpp 16
                + +nk ++ eaGa+pp
  MMETSP0890-20130614|1904_1 47 NVKNKVTIAEAGAIPP 62
                5689***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 206.35
//
Query:       MMETSP0890-20130614|1906_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 220.91
//
Query:       MMETSP0890-20130614|1911_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 119.82
//
Query:       MMETSP0890-20130614|1917_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       709  (0.0518578); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 714.98
//
Query:       MMETSP0890-20130614|1916_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-50  171.3   2.9    2.7e-50  171.1   2.0    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   2.0     2e-54   2.7e-50      59     286 ..       3     225 ..       1     248 [. 0.86

  Alignments for each domain:
  == domain 1    score: 171.1 bits;  conditional E-value: 2e-54
                 EEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH...HHHHHHHHHHS--TT-CHHHHHHHHT-HHCCCHHHH.----..-B--------HHHHHHCCCCCTH.TT---EEEEEGGG-TT-........................S...----T.TT-GGGHHHHSS---E.EE.EE-HHHHHHHHHHHHHH-----------HHHHHHH CS
  PF00291.20  59 vveassGNhGaavAlaaallglkativvpsgappekialiralGaevilvvssvegdyddaaelaeka.lelvrplkgeildqsndpdviaGygtiglEileqlg.kpdpdavvvpvGgGgliaGiakglkelil.pkirvigvepegsdalarslragervq...ldkk......ttia.glscgtpldgelafelidelvd.evvtvsdeealeavrllarregivvepsgaaalaallr 286
                 v+++s+GNhG a+A+aa++ +l++tiv+p +ap+ k++++r lGa  il+v+    + +++a+l++++ +++++p+        +d ++iaG+g++glEi+eq + ++d+  ++vpv+gGg++aGi+++l e  l p +r++ vep+g  +l ++l+a  r+    +  +      +tia g++ +    g++ + l+++l + +v++v++e+++ a+ +l ++ +  vepsga+alaa+ +
  MMETSP0890-20130614|1916_1   3 VCAHSAGNHGTALAWAASKKNLECTIVCPLTAPKTKKKAMRDLGA-HILEVEH-AHRTAAVATLVKDTgATMIHPF--------DDDNTIAGQGSLGLEIFEQTEgHLDA--ILVPVSGGGMAAGISAALAE--LsPSTRIVLVEPKGK-DLGQALAAHDREIakmT--TsvdqplDTIAdGMRSRL--LGQRPWSLLQHLPQtAVLSVDNEAIVNAMITLFSTFKTCVEPSGATALAAVQA 225
                 899******************************************.6666665.4599999999999999******........********************878888..********************..889**********97.77777777777555441..244556767777998887..************999999********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.65
# Mc/sec: 976.98
//
Query:       MMETSP0890-20130614|1921_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   65.4   2.4    8.8e-11   41.1   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
     0.0047   16.5   0.3      0.057   13.0   0.2    1.9  1  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.043   12.6   0.1      0.043   12.6   0.1    1.0  1  PF09206.6  Alpha-L-arabinofuranosidase B, catalytic
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  PF11820.3  Protein of unknown function (DUF3339)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   3.8e-09   1.3e-05      18      39 .]       2      23 ..       2      23 .. 0.97
   2 !   41.1   0.1   2.6e-14   8.8e-11       3      37 ..      29      63 ..      27      63 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.8e-09
                EEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 18 afspdgpllasgSrDgtirlWd 39
                +fs dg++++++S+D+t ++Wd
  MMETSP0890-20130614|1921_1  2 KFSKDGRRVVTASSDNTAKIWD 23
                69*******************9 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 2.6e-14
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirl 37
                ++ tl+gHt+ Vt+++f+p+g++++++S+D+t r+
  MMETSP0890-20130614|1921_1 29 LLFTLSGHTNVVTACDFAPNGTCVVTASADRTARV 63
                5789****************************997 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   1.7e-05     0.057     108     168 ..       3      62 ..       2      64 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
   PF08662.6 108 wspqgrlvllaGfgnlaGeleiydvkklkkiaka..easnatlvewspdgryvlTattsprlr 168
                 +s+ gr v++a   n+    +i+d  +   + +   +    t +++ p+g+ v+Ta+     r
  MMETSP0890-20130614|1921_1   3 FSKDGRRVVTASSDNT---AKIWDSMTGGLLFTLsgHTNVVTACDFAPNGTCVVTASADRTAR 62 
                 7888888888888888...689999977766655114566789*************9876665 PP

>> PF09206.6  Alpha-L-arabinofuranosidase B, catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.3e-05     0.043      34      85 ..      11      62 ..       3      64 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
   PF09206.6 34 krasdgattdiypytsstaPlsagGvanaaaqdtfCanttClvtiiydqssr 85
                  as ++t++i    +  + ++  G +n+ ++  f  n tC+vt   d+++r
  MMETSP0890-20130614|1921_1 11 VTASSDNTAKIWDSMTGGLLFTLSGHTNVVTACDFAPNGTCVVTASADRTAR 62
                556777889998888888889999********************99998876 PP

>> PF11820.3  Protein of unknown function (DUF3339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05       0.1      18      47 ..      26      55 ..      24      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-05
   PF11820.3 18 sPGlLfqlPgkervvefgnmktsgksilvh 47
                + GlLf l g+++vv   ++  +g+++++ 
  MMETSP0890-20130614|1921_1 26 TGGLLFTLSGHTNVVTACDFAPNGTCVVTA 55
                78************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 247.37
//
Query:       MMETSP0890-20130614|1922_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-15   54.8   1.1    1.3e-08   34.2   0.0    2.2  2  PF00400.27 WD domain, G-beta repeat
    0.00092   17.3   1.0     0.0031   15.6   0.7    1.7  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.046   12.4   0.0      0.051   12.3   0.0    1.1  1  PF07433.6  Protein of unknown function (DUF1513)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.4   1.3e-07   0.00061       3      39 .]       8      44 ..       6      44 .. 0.92
   2 !   34.2   0.0   2.9e-12   1.3e-08       1      39 []      48      88 ..      48      88 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.3e-07
                EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                c++tl++  ++V++vafs   ++++as+ + g +++W+
  MMETSP0890-20130614|1922_1  8 CLHTLQHN-DFVWAVAFSKLnRSVVASCDDAGLCKIWN 44
                77777777.****************************7 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 2.9e-12
                TEEEEEE.ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatl.rgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                gec++tl +  +s+V+ va+sp+  + la+g +D+++r+W+
  MMETSP0890-20130614|1922_1 48 GECLKTLeHDEESAVYTVAWSPSnETQLATGASDKKVRIWN 88
                68899999999*****************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.7   6.8e-07    0.0031     161     253 ..      29      94 ..      18      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.8e-07
   PF11715.3 161 elvvsladgglliltrssgdtdggawketkysssswlsslrgllgfkyrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  +v s++d gl+++ + s   +g  +k+++++++                     sa+ +++ s+   +++t ++t   D+k+R+Wn++t  c
  MMETSP0890-20130614|1922_1  29 SVVASCDDAGLCKIWNIS---NGECLKTLEHDEE---------------------SAVYTVAWSP---SNETQLATGASDKKVRIWNTDTSEC 94 
                 578899999999999999...8899999999998.....................7999999999...8999999***************999 PP

>> PF07433.6  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.051     216     269 ..      15      68 ..       7      96 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
   PF07433.6 216 agYigsvavdsdgelvavtsPrgntvaiwdaatgelleevalpdaagvaaassg 269
                 ++++ +va+++ ++ v++++  ++++ iw+ ++ge+l++ +  + ++v +++ +
  MMETSP0890-20130614|1922_1  15 NDFVWAVAFSKLNRSVVASCDDAGLCKIWNISNGECLKTLEHDEESAVYTVAWS 68 
                 567789*******************************99999988888766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 387.41
//
Query:       MMETSP0890-20130614|1928_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.5 198.5        2.9    7.1  12.6    8.1  4  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.4    0.0012        17      11      30 ..       2      21 ..       2      24 .. 0.79
   2 ?    7.1  12.6   0.00021       2.9       7      35 ..      26      54 ..      23      55 .. 0.95
   3 ?   -4.1  21.2      0.66     9e+03       1      34 [.      52      84 ..      48      86 .. 0.66
   4 ?  -79.9  87.4         1   1.4e+04       2      36 .]     140     174 ..      75     214 .. 0.97

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0012
   PF04886.7 11 TvqPTgqPtaqPTdqPtaqP 30
                T +PT  Pt++PT+ Pt +P
  MMETSP0890-20130614|1928_1  2 TPEPTPVPTPEPTSVPTPEP 21
                77888888888888888887 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00021
   PF04886.7  7 teqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                t++PT +PT  P++ +T++Pt  P  +Pt
  MMETSP0890-20130614|1928_1 26 TSEPTPGPTPRPSPVTTSEPTLVPKPEPT 54
                89**********************99998 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 0.66
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34
                +pT+ Pt +PT  PT  Pt++P++  t+ Pt +P
  MMETSP0890-20130614|1928_1 52 EPTSVPTPEPTPVPTPVPTPEPSAT-TSVPTPEP 84
                5777777777777777777777654.55566555 PP

  == domain 4    score: -79.9 bits;  conditional E-value: 1
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 pT++Pt +PT  PT +Pt+ PT +Pt  Pt++Pt+
  MMETSP0890-20130614|1928_1 140 PTSAPTQEPTPVPTPEPTPVPTPEPTPVPTSEPTN 174
                 99999999999999999999999999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                       68  (0.00497367); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.78
# Mc/sec: 663.61
//
Query:       MMETSP0890-20130614|1930_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 173.65
//
Query:       MMETSP0890-20130614|1924_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-52  171.4  18.3    3.1e-11   42.5   0.1    5.3  5  PF00400.27 WD domain, G-beta repeat
    1.8e-06   26.3   8.7      0.055   11.5   0.0    4.2  4  PF11715.3  Nucleoporin Nup120/160
    0.00017   21.0   0.0       0.16   11.5   0.0    3.5  3  PF07676.7  WD40-like Beta Propeller Repeat
    0.00047   19.4   1.2      0.029   13.6   0.5    3.4  3  PF08450.7  SMP-30/Gluconolaconase/LRE-like region
     0.0054   16.1   0.9       0.67    9.2   0.2    2.9  1  PF13360.1  PQQ-like domain
      0.008   15.4   0.0       0.74    9.1   0.0    2.7  2  PF02495.12 7kD viral coat protein


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.3   1.8e-14   4.2e-11       8      39 .]      49      80 ..      43      80 .. 0.93
   2 !   42.5   0.1   1.4e-14   3.1e-11       4      39 .]      87     122 ..      84     122 .. 0.95
   3 !   26.4   0.0   1.7e-09   3.9e-06       2      29 ..     127     154 ..     126     161 .. 0.92
   4 !   30.6   0.1     8e-11   1.8e-07       8      39 .]     174     206 ..     168     206 .. 0.90
   5 !   40.1   0.5   7.9e-14   1.8e-10      10      39 .]     218     247 ..     210     247 .. 0.93

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.8e-14
                ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39
                  Ht++++c++fs dg++++++S D+t ++Wd
  MMETSP0890-20130614|1924_1 49 LDHTGGINCCKFSKDGRRVVTASMDCTAKIWD 80
                58*****************************9 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 1.4e-14
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 + tlrgHt+ V+++afspd++++++ S+D+t r+W+
  MMETSP0890-20130614|1924_1  87 LLTLRGHTFYVSACAFSPDSTRVITTSEDRTARVWN 122
                 789********************************7 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 1.7e-09
                 EEEEEEESSSSSEEEEEEESSSTEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasg 29 
                 +++ +l gHts+V  +afspdg++++++
  MMETSP0890-20130614|1924_1 127 TLLLVLGGHTSTVHGCAFSPDGKRIVTA 154
                 67899**********************8 PP

  == domain 4    score: 30.6 bits;  conditional E-value: 8e-11
                 ESSSSSEEEEEEESSSTEEEEEE.TTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgS.rDgtirlWd 39 
                  +Ht++Vtc++fs+d ++++++  +D t rlW+
  MMETSP0890-20130614|1924_1 174 GEHTGTVTCCCFSHDEKYILTSFsWDETARLWN 206
                 68*************999999999********7 PP

  == domain 5    score: 40.1 bits;  conditional E-value: 7.9e-14
                 SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  10 HtspVtcvafspdgpllasgSrDgtirlWd 39 
                 H+++V+++afs d +l++++++D+t+r+Wd
  MMETSP0890-20130614|1924_1 218 HEDWVYSCAFSFDDKLIVTACHDNTVRIWD 247
                 99***************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.055   1.2e+02     234     255 ..      67      88 ..      59      99 .. 0.83
   2 !   11.5   0.0   2.4e-05     0.055     223     254 ..     102     129 ..      93     173 .. 0.82
   3 !    6.4   0.1   0.00084       1.9     226     256 ..     185     215 ..     173     220 .. 0.79
   4 !   10.3   0.2   5.7e-05      0.13     221     253 ..     225     253 ..     217     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.055
   PF11715.3 234 vftlsrDgkLRvWnletgqclr 255
                 v+t s D + ++W+  tg +l 
  MMETSP0890-20130614|1924_1  67 VVTASMDCTAKIWDSMTGILLL 88 
                 559***********99999854 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.4e-05
   PF11715.3 223 vsssevegqtfvftlsrDgkLRvWnletgqcl 254
                 +s+    ++t v+t s D++ RvWn+e+g++l
  MMETSP0890-20130614|1924_1 102 FSP----DSTRVITTSEDRTARVWNVENGTLL 129
                 444....889999****************993 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.00084
   PF11715.3 226 sevegqtfvftlsrDgkLRvWnletgqclrt 256
                   ++++ ++ + s D + R+Wn ++g++++t
  MMETSP0890-20130614|1924_1 185 FSHDEKYILTSFSWDETARLWNATDGTLIKT 215
                 44556666669****************9777 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 5.7e-05
   PF11715.3 221 ldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  ++s+    ++ +++t + D+++R+W++  gq+
  MMETSP0890-20130614|1924_1 225 CAFSF----DDKLIVTACHDNTVRIWDTQRGQL 253
                 45556....889999************987775 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.041        94      13      24 ..      57      68 ..      48      71 .. 0.79
   2 ?    2.4   0.0     0.049   1.1e+02      13      24 ..      99     110 ..      93     116 .. 0.81
   3 !   11.5   0.0   7.1e-05      0.16      13      24 ..     141     152 ..     139     152 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.041
                EEEE-----EEE CS
   PF07676.7 13 ePawSPDGkkiv 24
                +  +S+DG++ v
  MMETSP0890-20130614|1924_1 57 CCKFSKDGRRVV 68
                5669*****986 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.049
                 EEEE-----EEE CS
   PF07676.7  13 ePawSPDGkkiv 24 
                 + a+SPD ++ +
  MMETSP0890-20130614|1924_1  99 ACAFSPDSTRVI 110
                 679****99875 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 7.1e-05
                 EEEE-----EEE CS
   PF07676.7  13 ePawSPDGkkiv 24 
                 + a+SPDGk+iv
  MMETSP0890-20130614|1924_1 141 GCAFSPDGKRIV 152
                 679********8 PP

>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.5   1.3e-05     0.029      50     237 ..      23     190 ..       8     197 .. 0.74
   2 !    8.3   0.1   0.00051       1.2     184     236 ..     137     189 ..     114     239 .. 0.71
   3 ?    0.7   0.0      0.11   2.4e+02     214     244 ..     210     237 ..     199     254 .] 0.48

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   PF08450.7  50 kdgrlivaskrglalldlasgelttladleedekplnrfNDgkvdpdGr.lwfGtmgdeeakgkevgalyrldpdgklervlddltisNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvfidlkkgegepDGlavDaeGnvwvAvwgggkvvridpd.GklleeiklPak.rvtscafGGadl 237
                  +gr++va  r+ +++d+++ +l ++ d+         +N  k+++dGr ++  +m+++ +  ++ ++++ l+ +        ++    + a+spd++ ++ + s  r+  + +v+       n + ++ l  ++++  G a   +G+ +v+   +gk ++++ + G+   +i+   +  vt+c+f + ++
  MMETSP0890-20130614|1924_1  23 LSGRVVVAVGREAFVFDTETNKLLHILDH------TGGINCCKFSKDGRrVVTASMDCTAKIWDSMTGILLLTLR-------GHTFYVSACAFSPDSTRVI-TTSEDRTARVWNVE-------NGTLLLVLGGHTSTVHGCAFSPDGKRIVT--ADGKARVFNAEtGERQLIIEGEHTgTVTCCCFSHDEK 190
                 35999999999999999777777777776......3468999999999966667787777766655666666655.......5566667899999999998.56666666666663.......34556666777777999999999999998..7899999999999999999999777*******87764 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00051
   PF08450.7 184 gepDGlavDaeGnvwvAvwgggkvvridpd.GklleeiklPak.rvtscafGGad 236
                 ++  G a   +G+ +v+   +gk ++++ + G+   +i+   +  vt+c+f + +
  MMETSP0890-20130614|1924_1 137 STVHGCAFSPDGKRIVT--ADGKARVFNAEtGERQLIIEGEHTgTVTCCCFSHDE 189
                 44556666666666665..567777777777777777777766677777776655 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.11
   PF08450.7 214 GklleeiklPakrvtscafGGadlrtLyits 244
                 G+l+++++   ++v scaf     ++L +t+
  MMETSP0890-20130614|1924_1 210 GTLIKTLRHE-DWVYSCAFSFD--DKLIVTA 237
                 4444444444.44444444322..2344433 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2    0.0003      0.67      33     142 ..     103     251 ..      76     254 .] 0.66

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0003
   PF13360.1  33 vldggtlfvasakgrlvaldaatGkvlWsksl.egeiegap.lvaggrvvvvtadnslvaldaetGkl...................................lWssqlrse.piar.lrssaspaia..gdrvivgfssgklvaldlktG 142
                 ++d+ +++++s++++   ++ ++G++l      +++++g     +g+r+  vtad++ + ++aetG++                                   lW+  +++  +++r    + s+a++  +++++ +++++++ + d + G
  MMETSP0890-20130614|1924_1 103 SPDSTRVITTSEDRTARVWNVENGTLLLVLGGhTSTVHGCAfSPDGKRI--VTADGKARVFNAETGERqliiegehtgtvtcccfshdekyiltsfswdetarLWNATDGTLiKTLRhEDWVYSCAFSfdDKLIVTACHDNTVRIWDTQRG 251
                 5688888889999999999999999988877667777777735555555..5578899999999999977777776666666666666666666666666666666544444444444333334444443555555555555555555555 PP

>> PF02495.12  7kD viral coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.023        52      33      51 ..      92     110 ..      87     113 .. 0.87
   2 !    9.1   0.0   0.00032      0.74      29      47 ..     130     148 ..     120     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.023
  PF02495.12  33 GesvtitgCeitpefieal 51 
                 G+   ++ C ++p+  +++
  MMETSP0890-20130614|1924_1  92 GHTFYVSACAFSPDSTRVI 110
                 99999*********99887 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00032
  PF02495.12  29 ivITGesvtitgCeitpef 47 
                  v+ G+  t++gC ++p+ 
  MMETSP0890-20130614|1924_1 130 LVLGGHTSTVHGCAFSPDG 148
                 5778*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.70
# Mc/sec: 869.54
//
Query:       MMETSP0890-20130614|1932_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-08   34.6   0.3     0.0041   16.8   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     4e-07    0.0054      18      39 .]       1      23 [.       1      23 [. 0.97
   2 !   16.8   0.0     3e-07    0.0041       5      29 ..      30      54 .]      27      54 .] 0.92

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4e-07
                EEESS.STEEEEEETTSEEEEEE CS
  PF00400.27 18 afspd.gpllasgSrDgtirlWd 39
                a+sp+  + l +g  D ++r+W+
  MMETSP0890-20130614|1932_1  1 AWSPSnETQLSTGATDDKVRIWN 23
                7*********************7 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 3e-07
                EEEESSSSSEEEEEEESSSTEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasg 29
                ++l gH++ V ++a+s+dg  l+s+
  MMETSP0890-20130614|1932_1 30 RELVGHEDYVQSIAYSHDGITLVSA 54
                6799******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 208.71
//
Query:       MMETSP0890-20130614|1935_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-10   39.9   0.2    4.6e-10   38.8   0.1    1.6  1  PF00400.27 WD domain, G-beta repeat
    0.00065   17.8   0.8     0.0012   17.0   0.6    1.3  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.039   12.6   0.0      0.047   12.3   0.0    1.1  1  PF04053.9  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1     1e-13   4.6e-10       3      39 .]      61      97 ..      59      97 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1e-13
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++t+++H++ V cva+s dg+++a++S+D+t rlW+
  MMETSP0890-20130614|1935_1 61 TLRTIEAHNNRVVCVAYSFDGSMVATASHDHTTRLWN 97
                6899********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   2.6e-07    0.0012     225     257 ..      79     107 ..      55     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.6e-07
   PF11715.3 225 ssevegqtfvftlsrDgkLRvWnletgqclrtt 257
                 +    + ++v+t s D++ R+Wn++t++cl t 
  MMETSP0890-20130614|1935_1  79 F----DGSMVATASHDHTTRLWNTNTYACLHTL 107
                 3....668999******************9886 PP

>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05     0.047     123     170 ..      46      95 ..      38     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
   PF04053.9 123 ksesfisfYDweqkklvrridvkk..vknViwsddgelvalvskdtvyil 170
                 ++++ + +YD ++++++r i+ ++  v  V  s dg++va +s d ++ l
  MMETSP0890-20130614|1935_1  46 TNSGKLLIYDTATGSTLRTIEAHNnrVVCVAYSFDGSMVATASHDHTTRL 95 
                 344559***************9964688888999********97776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.52
# Mc/sec: 511.53
//
Query:       MMETSP0890-20130614|1936_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-05   22.7   0.0       0.23   11.1   0.0    2.1  2  PF06743.10 FAST kinase-like protein, subdomain 1
    0.00047   19.6   0.1        1.2    8.7   0.0    2.4  3  PF07671.6  Protein of unknown function (DUF1601)
    0.00055   19.2   0.0       0.72    9.3   0.0    2.4  2  PF11121.3  Protein of unknown function (DUF2639)
     0.0072   15.7   0.0     0.0089   15.5   0.0    1.2  1  PF04542.9  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   6.6e-05      0.23      29      49 ..       4      24 ..       1      28 [. 0.87
   2 !   10.1   0.0   0.00013      0.43      18      46 ..      30      58 ..      26      60 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.6e-05
  PF06743.10 29 lereLdsispelllnlvwSlc 49
                  ++Lds++p++l n++w++ 
  MMETSP0890-20130614|1936_1  4 AVTKLDSFKPQELANILWAYV 24
                57899*************985 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00013
  PF06743.10 18 aeeffeklasalereLdsispelllnlvw 46
                a+ +f+++a a  ++Lds++p++l +++w
  MMETSP0890-20130614|1936_1 30 ASDLFNAIAAAAMKKLDSFKPQELASTLW 58
                56799*******************99999 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00035       1.2      27      37 .]      10      20 ..       7      20 .. 0.90
   2 !    8.6   0.0   0.00037       1.3      17      37 .]      33      57 ..      30      57 .. 0.91
   3 ?   -3.0   0.0       1.6   5.4e+03       9      18 ..      61      70 .]      61      70 .] 0.76

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00035
   PF07671.6 27 rFNpQsIANtL 37
                 F+pQ+ AN+L
  MMETSP0890-20130614|1936_1 10 SFKPQELANIL 20
                7*********8 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00037
   PF07671.6 17 LlaAIr....rnaerFNpQsIANtL 37
                L++AI+    +    F+pQ+ A tL
  MMETSP0890-20130614|1936_1 33 LFNAIAaaamKKLDSFKPQELASTL 57
                899**99999***********9987 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.6
   PF07671.6  9 eeQrLsdrLl 18
                e Q Ls  L+
  MMETSP0890-20130614|1936_1 61 EKQVLSMKLY 70
                5788998887 PP

>> PF11121.3  Protein of unknown function (DUF2639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00021      0.72      24      37 ..       7      20 ..       3      23 .. 0.89
   2 !    7.9   0.0   0.00056       1.9      23      37 ..      43      57 ..      37      63 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00021
   PF11121.3 24 kLesYkehiLanLl 37
                kL+s+k ++Lan l
  MMETSP0890-20130614|1936_1  7 KLDSFKPQELANIL 20
                9***********98 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00056
   PF11121.3 23 rkLesYkehiLanLl 37
                +kL+s+k ++La+ l
  MMETSP0890-20130614|1936_1 43 KKLDSFKPQELASTL 57
                9**********9754 PP

>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06    0.0089       9      45 ..      16      52 ..       8      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-06
                HHHHHHHHS-TTS-HHHHHH------HHHHHTTSS-- CS
   PF04542.9  9 vrrlarrllgsgadaeDlvQeaflrllraverfdper 45
                + +++  +++ g++a Dl++ + +++++++++f p  
  MMETSP0890-20130614|1936_1 16 LANILWAYVKAGVEASDLFNAIAAAAMKKLDSFKPQE 52
                7789999**************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.48
# Mc/sec: 349.47
//
Query:       MMETSP0890-20130614|1950_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-14   53.9   0.1    2.6e-14   53.6   0.0    1.1  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.9e-18   2.6e-14       1     175 [.       9     163 ..       9     190 .. 0.66

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.9e-18
                 EEEEECE...........CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHCHHCTTT-EEEE--------SEEEECTEEEEEEESCGCCEEEEEECTTSS-ECGGCEECCTCEEEEEEEEEECTEEEEEEECHHHCTSSTTSHHHHHHHHHHHHHHCCHHHHSEEEE---S--BSSGH CS
  PF03372.18   1 ltwNvlgwnarsdr....akkldqladllqsedpDvllLQEvdedplsellatglasglglagdgkvggggggdalgggglallskypldksirrtfqldgkagiavprlssknkgdvpvrfrggktlalvntHltpgnrlrqrderallaeidkladdsrgspvilaGDfNsrpdspd 175
                 +t+Nv             +++++++ dl+++ d+ +++LQE++   ++ +  +gl++ +++     ++ + g      +g +llsky + ++++   + + +  i     +            g++ +++ ++Hl +++  +++ ++++ + ++++ +d + +p +++GDfN+  + ++
  MMETSP0890-20130614|1950_1   9 MTYNVHEF-----KdafhQNRKKEIVDLIGRSDASIVALQEAT--FNNWSTLDGLKGVFAYSKYVQTETH-G---STIIGNVLLSKYRIGETRVIEPYPN-RQIIISEIFFP-----------GDQAVHVAVAHLDNNGYGHRESLEQVHELLQDMKTDQD-GPSFFLGDFNALYEKDP 163
                 8******3.....12344577888******************8..4444444899999974333333333.3...358*********9887666555333.33333332222...........49999********9666666555555555555555544.58********7766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.46s 00:00:00.92 Elapsed: 00:00:00.85
# Mc/sec: 541.29
//
Query:       MMETSP0890-20130614|1967_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.9   2.1       0.23   11.3   1.5    1.3  1  PF07125.6 Protein of unknown function (DUF1378)


Domain annotation for each model (and alignments):
>> PF07125.6  Protein of unknown function (DUF1378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.5   1.7e-05      0.23       7      18 ..       4      15 ..       1      17 [. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.7e-05
   PF07125.6  7 llLYFCtvvcvL 18
                 lLYFCt vcv+
  MMETSP0890-20130614|1967_1  4 ALLYFCTLVCVV 15
                69********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.50s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 316.04
//
Query:       MMETSP0890-20130614|1961_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-19   68.1   0.0    5.4e-19   67.8   0.0    1.1  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    4.6e-17   62.1   0.0    7.6e-17   61.4   0.0    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family
    1.6e-15   56.6   0.0    4.3e-15   55.2   0.0    1.7  2  PF07993.7  Male sterility protein
    2.4e-14   53.6   0.0    3.4e-14   53.1   0.0    1.3  1  PF13460.1  NADH(P)-binding
    9.7e-05   22.2   0.0    0.00026   20.8   0.0    1.7  1  PF00106.20 short chain dehydrogenase
    0.00036   20.1   0.0    0.00099   18.6   0.0    1.7  1  PF08659.5  KR domain
     0.0017   17.2   0.0     0.0025   16.6   0.0    1.2  1  PF02719.10 Polysaccharide biosynthesis protein
     0.0026   16.9   0.0      0.039   13.0   0.0    2.1  2  PF05368.8  NmrA-like family
  ------ inclusion threshold ------
      0.039   13.7   0.0      0.084   12.6   0.0    1.6  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus
      0.064   12.1   0.0       0.14   11.0   0.0    1.6  1  PF03435.13 Saccharopine dehydrogenase
        0.1   12.7   0.0       0.27   11.4   0.0    1.7  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   4.3e-22   5.4e-19       1     185 [.       5     198 ..       5     255 .. 0.79

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 4.3e-22
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsk.lqvkt....vlegDvtdk..ekleealegvdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvka.gvrvlvYtSsaevv..gpnvkgqeilnGdEetpyest...hkdaYaesKalAEklvlkangrtlkngg.rllTcAlRpagiyGeg 185
                 +VtG+ G++ + ++r Ll+     +vr   ++ s+e++ ++ k l+ ++    ++  D+++   ++ ++a+++   v+hta+   +    ++d ++k  v+GT++vleac ++ +v+++v tSs  ++  g    +++ ++ +E+t  e      ++aY++sK lAE +        +k+++ ++    + pag++G+ 
  MMETSP0890-20130614|1961_1   5 VVTGANGYIASMIIRDLLKDP-TIQVRGTVRDPSNEKKTKFLKeLDGASerleLVRLDLLKSsvDDYKKAVQDCIYVLHTASPFPLEAPKNEDDLIKPAVHGTRTVLEACNETpSVKRVVITSSCAAIayGHKDGKDPKQKYNEDTWSEVEnmgKEEAYSKSKTLAERAAWD----FIKEKNpSFSLTTVNPAGVFGPS 198
                 7*****************977.79999999888888877654325544456679*****87522799*******************************************98758*********998732344456788889999877655456899**********87543....33344335555557899999986 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   6.1e-20   7.6e-17       1     227 [.       4     246 ..       4     256 .. 0.71

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 6.1e-20
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH........TBEEEB--TT..-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT..EEEEEEE.GG.G---B.SSSC........B-TTS----SSHHHHHHHHHHHHHHHHHHHH..T-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri........rvelveldlt..dkdalerlfaeeqpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagv.krflfasS.se.vygkd.aeqp........ikEetplgplspYaaaKlageklveayaeey..glnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgd 227
                 ++VtGa+G+i s +++ ll+ +   v  + r+ s++++t+          r+elv+ldl+  + d+ ++++++    +V+h A     +    +++ d+i+  v+gt+++lea+ +    kr++ +sS ++  yg +  ++p        ++E + +g+ ++Y+ +K  +e+ ++++ +e    ++ +++++  v+Gp+     + +    +i+ki ++  + l + G      ++v+Dv + ++ +++   
  MMETSP0890-20130614|1961_1   4 VVVTGANGYIASMIIRDLLKDPTIQVRGTVRDPSNEKKTKFLkeldgaseRLELVRLDLLksSVDDYKKAVQDC--IYVLHTASP--FPLEApKNEDDLIKPAVHGTRTVLEACNETPSvKRVVITSScAAiAYGHKdGKDPkqkynedtWSEVENMGKEEAYSKSKTLAERAAWDFIKEKnpSFSLTTVNPAGVFGPS--VSPNPGTTLEIIEKIMTRGFPMLPNLGI---GIVDVRDVSQTHIKAMKSQS 246
                 68*****************9888866666666666555554489999*************43445566666666..778888876..4556669*********************998889*******5332477665333345544444555555577888***************8886568999************..4444555556666666665333322222...33556666666666666666 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.4e-18   4.3e-15       1     206 [.       6     205 ..       6     233 .. 0.83
   2 ?   -1.7   0.0      0.78   9.6e+02      88     101 ..     249     262 ..     220     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 3.4e-18
   PF07993.7   1 lTGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepyke..llrtNvlGtrevlelakklkkl.vllhvST..avvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsg..lpvviiRpsiivg...esetGw 206
                 +TGa G+++++++++ll++ + +++   vR  s+e+ ++ l +el+           ++er++ v+ Dl ++      +d+++ ++++  ++h A    +e+p +e  l+++ v+Gtr+vle ++++ +  +++  S+  a+++g++ g+  ++ y+e++  + ++ g +++Y++sK laE+      ++++  + ++ + p  + g   ++++G 
  MMETSP0890-20130614|1961_1   6 VTGANGYIASMIIRDLLKDPT-IQVRGTVRDPSNEKKTKFL-KELDG----------ASERLELVRLDLLKSS----VDDYKKAVQDCIYVLHTASPFPLEAPKNEddLIKPAVHGTRTVLEACNETPSVkRVVITSScaAIAYGHKDGKDPKQKYNEDTWSEVENMGKEEAYSKSKTLAERAAWDFIKEKNpsFSLTTVNPAGVFGpsvSPNPGT 205
                 8****************9986.8*******98885555555.44443..........489*********9987....789*****************99998654444*****************98877788888888999999999999999999************************99888776644114478888888888666666665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.78
   PF07993.7  88 vdviihsAAtvnfe 101
                  + i+++A++v+f 
  MMETSP0890-20130614|1961_1 249 GKRIVNCAGEVSFH 262
                 56899999999996 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   2.8e-17   3.4e-14       1     173 [.       4     234 ..       4     244 .. 0.73

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 2.8e-17
   PF13460.1   1 IaviGAtGktGrrivkellarg.hevtalvRnpsklpe..........ssgvtivkkDlfdl..edlaealagvdvvvdafgarpe......d......regvkhlldalkaag.vrrlvvvsaag..lyrdkpglfel..ldkplf..............keylrakaaaeelleas..gldwtivrPaalfea.....eettyelite........gdpagesaisraDv 173
                 ++v+GA+G +++ i++ ll+   ++v+ +vR ps+ ++          s++++ v++Dl +    d+++a++++ +v +++++ p       d      + g++ +l+a+ ++  v+r+v+ s+    +y  k+g++     +++ +              k+   a++aa+++++++  ++  t v Pa++f++     ++tt e+i++            g + ++++Dv
  MMETSP0890-20130614|1961_1   4 VVVTGANGYIASMIIRDLLKDPtIQVRGTVRDPSNEKKtkflkeldgaSERLELVRLDLLKSsvDDYKKAVQDCIYVLHTASPFPLeapkneDdlikpaVHGTRTVLEACNETPsVKRVVITSSCAaiAYGHKDGKDPKqkYNED-TwsevenmgkeeaysKSKTLAERAAWDFIKEKnpSFSLTTVNPAGVFGPsvspnPGTTLEIIEKimtrgfpmLPNLGIGIVDVRDV 234
                 79********************9*********99433344577788888**********887779****************777664444452677788**************55*****9987665588877777333212222.25788888998444444445555666777654469*************97776557777777766644443222335566666666 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.1e-07   0.00026       3     139 ..       4     131 ..       2     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.1e-07
                 EEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--T..TSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH.---EEEEEECHHH CS
  PF00106.20   3 vliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDv..adrdalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltldad.lgafvlfSSvagv 139
                 v++TG+ g +   + r L+++   ++  + r++++++ ++ ++el  + ++ + v++D+  ++ d+ +++++++         v+h+a   + +      p++ ++ ++p v+g++ + e++ +++  +++v++SS+a++
  MMETSP0890-20130614|1961_1   4 VVVTGANGYIASMIIRDLLKDPTIQVRGTVRDPSNEKKTKFLKELDGASERLELVRLDLlkSSVDDYKKAVQDCI-------YVLHTASPFPLE-----APKNEDDLIKPAVHGTRTVLEACNETPsVKRVVITSSCAAI 131
                 89*******************9999*******999999999*****999*******9961134466666666666.......899999777733.....477779*******************777***********97 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     8e-07   0.00099       3     141 ..       4     132 ..       3     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 8e-07
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC.----EEEEEEEGGGT- CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad.epldffvlfSSiagvl 141
                 ++vtG+ g ++  ++r L+++   ++  + r+ +++e+++++l+el     + ++v++D+     +++ +++++++ +    v+h+A     +++    +++ ++ ++p v+G++ + e++++  +++ +v++SS+a++ 
  MMETSP0890-20130614|1961_1   4 VVVTGANGYIASMIIRDLLKDPTIQVRGTVRD-PSNEKKTKFLKELDGASERLELVRLDL-----LKSSVDDYKKAVQDCIYVLHTA-----SPFPLEAPKNEDDLIKPAVHGTRTVLEACNEtPSVKRVVITSSCAAIA 132
                 69******************************.99999999******************7.....4555666666655666789988.....45555556666789*********999999885789**********986 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06    0.0025       1     131 [.       4     130 ..       4     135 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-06
  PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkii..llerdElklyeiekeleeelkkeklkveivpvi.gdvrdkerleealeelkvdvvfhaAAlKhVPl.veenpleavktNvlgtenvieaaiea.gvekvvliStDKA 131
                 v+vtGa G i s ++r +lk    +++  + + +  k +++ kel    ++e+l++  + ++  +v d++   +a++  ++ +v+h+A     Pl + +n  + +k  v+gt++v+ea+ e+  v++vv+ S+  A
  MMETSP0890-20130614|1961_1   4 VVVTGANGYIASMIIRDLLKDPTIQVRgtVRDPSNEKKTKFLKELD--GASERLELVRLDLLkSSVDDYK---KAVQ--DCIYVLHTASP--FPLeAPKNEDDLIKPAVHGTRTVLEACNETpSVKRVVITSSCAA 130
                 79******************97777752266666666666777764..4444565555556514566655...5666..7779****986..555245788899***************986489***99998666 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.1e-05     0.039       1      40 [.       4      44 ..       4     120 .. 0.81
   2 ?    1.8   0.0     0.087   1.1e+02     180     226 ..     229     273 ..     192     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.1e-05
                EEESS----HHHHHHHHHHH.---EEEEE-S-----HHHHH CS
   PF05368.8  1 ilviGaTGrqGksvvraslk.aghkvralvRdlkselaksl 40
                ++v+Ga G++++ ++r +lk    +vr  vRd+++e  +++
  MMETSP0890-20130614|1961_1  4 VVVTGANGYIASMIIRDLLKdPTIQVRGTVRDPSNEKKTKF 44
                78*****************9889**********55544444 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.087
                 -HHHH---HHHHHHH--TTT.---EEE--SEEE-HHHHHHHHHHHHT CS
   PF05368.8 180 dkeeDiGtfvikilkdprklnkgkrirlaanilsgnevvelfekkig 226
                 ++++D+ +  ik++k ++    gkri   a  +s++++ +++ k+ g
  MMETSP0890-20130614|1961_1 229 VDVRDVSQTHIKAMKSQSAA--GKRIVNCAGEVSFHQIGSILAKEFG 273
                 5899***********99999..9999999999999999999998876 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.8e-05     0.084       2      54 ..       3      56 ..       2      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.8e-05
                EE--B--------HHHHHHHH.---EE-EE-----................... CS
  PF01113.15  2 kvavvGasGrmGkevikaieeaedlelvaavdrkeselegkdagellglg.klg 54
                +v+v+Ga+G + +++i+ + +++ +++ + v  +++e++ k + el g + +l+
  MMETSP0890-20130614|1961_1  3 RVVVTGANGYIASMIIRDLLKDPTIQVRGTVRDPSNEKKTKFLKELDGASeRLE 56
                89******************************9998888888888777764444 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.14       1      77 [.       4      86 ..       4     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
  PF03435.13  1 vlvlGa.GsvGqavaellarhgdvd.eitvadrtlekaqalaaka..lglrveaiald..vsnyeaLeallkegdlvvnlapp 77
                v+v Ga G++++ ++++l ++  ++ + tv d+++ek  + ++++  +++r+e + ld  +s +++ ++++++   v++ a p
  MMETSP0890-20130614|1961_1  4 VVVTGAnGYIASMIIRDLLKDPTIQvRGTVRDPSNEKKTKFLKELdgASERLELVRLDllKSSVDDYKKAVQDCIYVLHTASP 86
                7999********************99**************9999899555555555541145555566666666666666555 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.27       1      46 [.       3      47 ..       3      75 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00022
                EEEEB--------HHHHHHHCTSSEEEEEEEETTTT---BHHHHSG CS
  PF01118.19  1 kvaivGatGyvGqellrlLeehpelelvalvassrsaGkklaeahk 46
                +v + Ga Gy+ + ++r L ++p +++   v  ++   kk ++ ++
  MMETSP0890-20130614|1961_1  3 RVVVTGANGYIASMIIRDLLKDPTIQVRGTVRDPS-NEKKTKFLKE 47
                799***********************999666665.8888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 1141.42
//
Query:       MMETSP0890-20130614|1970_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 251.05
//
Query:       MMETSP0890-20130614|1973_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.85
# Mc/sec: 245.27
//
Query:       MMETSP0890-20130614|1972_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   49.9   0.0    2.2e-13   49.8   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    6.5e-07   28.9   0.0    7.5e-07   28.6   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   3.3e-17   2.2e-13      14      67 ..       2      55 ..       1      57 [] 0.93

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 3.3e-17
   PF13306.1 14 ltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitips 67
                lt++t+p  +t+I   aF++ +sl+++tlp  lt+ig++aF +c+sl+++t+p 
  MMETSP0890-20130614|1972_1  2 LTQLTLPAGLTTIAHGAFCGWTSLTELTLPAGLTTIGNEAFGGCTSLNQLTLPA 55
                8999*********************************************99996 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.1e-10   7.5e-07       3      56 ..       2      53 ..       1      55 [. 0.96

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.1e-10
   PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                L+ L L    l++i++gaF g+++L++L L    l++i  eaf g++sL +L L
  MMETSP0890-20130614|1972_1  2 LTQLTLPAG-LTTIAHGAFCGWTSLTELTLP-AGLTTIGNEAFGGCTSLNQLTL 53
                788999999.*********************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      119  (0.00870392); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.33s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 243.91
//
Query:       MMETSP0890-20130614|1979_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-26   91.5   3.2    1.7e-26   91.2   2.2    1.1  1  PF05676.8 NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
     0.0026   17.3   2.3     0.0037   16.8   1.6    1.3  1  PF08583.5 Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> PF05676.8  NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   2.2   2.5e-30   1.7e-26       4      63 ..      25      84 ..      22      87 .. 0.96

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 2.5e-30
   PF05676.8  4 atqeemeaaklpleqRDyCAhlLiklnkCrkdefylalkCeherheyekCeyddyvkRmk 63
                 t+eem +a++pl++RD CA lLi+l+kCr ++f++++kC herh+yekC+y +++kR k
  MMETSP0890-20130614|1979_1 25 PTHEEMAKAEVPLGYRDACAYLLIPLMKCRDETFFMPWKCTHERHAYEKCQYIEWKKRSK 84
                599*******************************************************87 PP

>> PF08583.5  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.6   5.4e-07    0.0037      10      58 ..      40      86 ..      38      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.4e-07
   PF08583.5 10 rkeCaelikafaeChkdrtlkavgkCneekeamkkClkeyrtderlkdr 58
                r++Ca l   + +C   +t+ +++kC  e++a  kC   + +++++ d+
  MMETSP0890-20130614|1979_1 40 RDACAYLLIPLMKCRD-ETFFMPWKCTHERHAYEKCQYIEWKKRSK-DE 86
                5778888888999977.*******************8877777766.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 363.08
//
Query:       MMETSP0890-20130614|1980_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-27   91.9   2.0      2e-14   52.7   0.1    2.1  2  PF13374.1  Tetratricopeptide repeat
    1.4e-26   92.0   0.7    1.6e-26   91.9   0.5    1.0  1  PF13424.1  Tetratricopeptide repeat
    4.8e-14   51.1   6.0    1.1e-08   34.1   1.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.9e-13   49.7   2.8      3e-13   49.0   2.0    1.3  1  PF13414.1  TPR repeat
    4.5e-13   47.9   5.9    1.9e-07   30.3   0.8    2.1  2  PF07719.12 Tetratricopeptide repeat
    5.4e-11   41.3   1.2    4.4e-05   22.8   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
    8.8e-10   38.8   2.3    1.2e-09   38.4   1.6    1.3  1  PF13432.1  Tetratricopeptide repeat
    1.9e-07   30.9   1.1     0.0054   17.1   0.3    2.2  2  PF13428.1  Tetratricopeptide repeat
    2.2e-07   30.3   5.4    0.00032   20.5   0.5    3.3  3  PF13431.1  Tetratricopeptide repeat
    1.9e-06   27.6   0.0     0.0038   17.4   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
    2.9e-06   26.5   4.8     0.0018   17.7   0.5    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.4e-05   24.6   0.9     0.0031   17.1   0.1    2.2  2  PF07720.7  Tetratricopeptide repeat
      2e-05   24.5   1.0      0.029   14.6   0.1    2.3  2  PF13174.1  Tetratricopeptide repeat
    0.00039   20.3   0.1    0.00056   19.8   0.1    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.017   15.0   0.4        1.3    8.9   0.1    2.1  2  PF12688.2  Tetratrico peptide repeat
      0.021   14.7   0.4       0.03   14.2   0.3    1.3  1  PF14346.1  Domain of unknown function (DUF4398)
      0.027   14.1   0.3        1.9    8.2   0.0    2.1  2  PF13422.1  Domain of unknown function (DUF4110)
       0.13   12.6   0.0        1.3    9.3   0.0    1.9  2  PF14357.1  Domain of unknown function (DUF4404)
       0.63    9.8   3.1        1.1    9.0   0.3    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.1   2.8e-17     2e-14       1      42 []       5      46 ..       5      46 .. 0.98
   2 !   39.3   0.1   4.9e-13   3.5e-10       1      33 [.      47      79 ..      47      80 .] 0.94

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 2.8e-17
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +l+a+g+y+e  +l+e+a  ir++ lG++HPd
  MMETSP0890-20130614|1980_1  5 LATRLNNLAGLLYAQGKYDESKPLYERASRIREEKLGPNHPD 46
                6999*************************************8 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 4.9e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairr 33
                +a +lnnLA +l+a+g+y+eA +l+e+a +i +
  MMETSP0890-20130614|1980_1 47 VAQSLNNLAALLYAQGKYDEAKPLYERAIEIGE 79
                799*************************99966 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.5   2.2e-29   1.6e-26       1      77 [.       2      79 ..       2      80 .] 0.98

  Alignments for each domain:
  == domain 1    score: 91.9 bits;  conditional E-value: 2.2e-29
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                hpdlat lnnla++l+++g+yde+  lye+a  +  ++lg++hpd+a +lnnla l++a+g+ydeA++++e+A+ei e
  MMETSP0890-20130614|1980_1  2 HPDLATRLNNLAGLLYAQGKYDESKPLYERASRIrEEKLGPNHPDVAQSLNNLAALLYAQGKYDEAKPLYERAIEIGE 79
                9*********************************9999*************************************976 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   4.9e-07   0.00035       4      31 ..       9      36 ..       6      39 .. 0.90
   2 !   34.1   1.0   1.5e-11   1.1e-08       1      30 [.      48      77 ..      48      80 .] 0.95

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.9e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALeln 31
                l+nl+ +++ +gkyde    ye+A +++
  MMETSP0890-20130614|1980_1  9 LNNLAGLLYAQGKYDESKPLYERASRIR 36
                89**********************7765 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 1.5e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a++l+nl+++++ +gkydeA   ye+A+e+
  MMETSP0890-20130614|1980_1 48 AQSLNNLAALLYAQGKYDEAKPLYERAIEI 77
                789**************************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   2.0   4.2e-16     3e-13       2      67 ..       5      77 ..       4      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 4.2e-16
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                +A  l++l+  l+ +g+yde+  +ye+A +++     pn+++    ++nlA++++ +g +y+eA   ye+A+e+
  MMETSP0890-20130614|1980_1  5 LATRLNNLAGLLYAQGKYDESKPLYERASRIReeklgPNHPDvaqSLNNLAALLYAQG-KYDEAKPLYERAIEI 77
                57789************************9966666666655555*************.6************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   3.8e-07   0.00028       4      30 ..       9      35 ..       6      38 .. 0.89
   2 !   30.3   0.8   2.7e-10   1.9e-07       1      30 [.      48      77 ..      48      80 .] 0.93

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.8e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                l+nl+ ++y++g+y+e + ++e+A ++
  MMETSP0890-20130614|1980_1  9 LNNLAGLLYAQGKYDESKPLYERASRI 35
                89**********************776 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 2.7e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+ l+nl+ ++y++g+y+eA+ ++e+A+e+
  MMETSP0890-20130614|1980_1 48 AQSLNNLAALLYAQGKYDEAKPLYERAIEI 77
                5789************************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-06    0.0018       2      34 ..       9      41 ..       9      43 .. 0.89
   2 !   22.8   0.1   6.1e-08   4.4e-05       1      28 [.      50      77 ..      50      80 .] 0.90

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.5e-06
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                l+nLa l  ++g+y++   lyera +++++ l+
  MMETSP0890-20130614|1980_1  9 LNNLAGLLYAQGKYDESKPLYERASRIREEKLG 41
                89*********************8888877665 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 6.1e-08
   PF13176.1  1 allnLarlysrlgdyekAielyeraLal 28
                +l+nLa l  ++g+y++A  lyera+++
  MMETSP0890-20130614|1980_1 50 SLNNLAALLYAQGKYDEAKPLYERAIEI 77
                79**********************6654 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   1.6   1.6e-12   1.2e-09       3      60 ..      12      77 ..       4      80 .] 0.95

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 1.6e-12
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                lA +l+++G+yde  +++e+a +          P+ a+ l +la +l+++g++deA  l+++a+++
  MMETSP0890-20130614|1980_1 12 LAGLLYAQGKYDESKPLYERASRIReeklgpnhPDVAQSLNNLAALLYAQGKYDEAKPLYERAIEI 77
                899***************99999999************************************9865 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00013     0.097       6      37 ..      11      47 ..       5      51 .. 0.77
   2 !   17.1   0.3   7.5e-06    0.0054       4      31 ..      51      78 ..      48      80 .] 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00013
   PF13428.1  6 alarallalGdpdeAiallrrala.....laPddaea 37
                 la +l a+G +de   l++ra +     l+P+++++
  MMETSP0890-20130614|1980_1 11 NLAGLLYAQGKYDESKPLYERASRireekLGPNHPDV 47
                79********************554344467777766 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 7.5e-06
   PF13428.1  4 llalarallalGdpdeAiallrralala 31
                l  la++l a+G +deA  l++ra++ +
  MMETSP0890-20130614|1980_1 51 LNNLAALLYAQGKYDEAKPLYERAIEIG 78
                5679********************9865 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0029       2.1      16      32 ..       9      25 ..       1      27 [. 0.84
   2 !   20.5   0.5   4.4e-07   0.00032       9      33 ..      44      68 ..      28      69 .. 0.92
   3 ?    2.6   0.0      0.24   1.7e+02       1       8 [.      70      77 ..      70      80 .] 0.87

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0029
   PF13431.1 16 ynnLAelllnnGdleeA 32
                +nnLA ll+++G+++e+
  MMETSP0890-20130614|1980_1  9 LNNLAGLLYAQGKYDES 25
                89*************97 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 4.4e-07
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a+++nnLA ll+++G+++eA+
  MMETSP0890-20130614|1980_1 44 HPDVAQSLNNLAALLYAQGKYDEAK 68
                7888*******************97 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.24
   PF13431.1  1 lyekalel 8 
                lye+a+e+
  MMETSP0890-20130614|1980_1 70 LYERAIEI 77
                7*****97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0039       2.8       5      26 .]      10      31 ..       6      31 .. 0.84
   2 !   17.4   0.0   5.2e-06    0.0038       2      26 .]      49      73 ..      48      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0039
                ---HHHHHH-------HHHHHT CS
   PF07721.9  5 laLArallalGdldeAraller 26
                 +LA +l+a+G +de   l er
  MMETSP0890-20130614|1980_1 10 NNLAGLLYAQGKYDESKPLYER 31
                589***********98777775 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 5.2e-06
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                + l +LA +l+a+G +deA  l er
  MMETSP0890-20130614|1980_1 49 QSLNNLAALLYAQGKYDEAKPLYER 73
                67789**************999987 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00043      0.31       4      30 ..       9      35 ..       6      39 .. 0.87
   2 !   17.7   0.5   2.5e-06    0.0018       2      30 ..      49      77 ..      48      79 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00043
                TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                ++nl+ ++   G+yd++k  +e+a  +
  MMETSP0890-20130614|1980_1  9 LNNLAGLLYAQGKYDESKPLYERASRI 35
                6789999999*************9776 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.5e-06
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                ++++nl+ ++   G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|1980_1 49 QSLNNLAALLYAQGKYDEAKPLYERAIEI 77
                7899***********************98 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0086       6.2       8      19 ..      13      24 ..       9      33 .. 0.88
   2 !   17.1   0.1   4.3e-06    0.0031       7      27 ..      54      72 ..      50      80 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0086
                HHHHHHTT-HHH CS
   PF07720.7  8 Aaefynkkkyqe 19
                A  +y+++ky+e
  MMETSP0890-20130614|1980_1 13 AGLLYAQGKYDE 24
                6679******97 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.3e-06
                HHHHHHHTT-HHHHHHH..HH CS
   PF07720.7  7 lAaefynkkkyqeArelfsYa 27
                lAa +y+++ky+eA  l  Y+
  MMETSP0890-20130614|1980_1 54 LAALLYAQGKYDEAKPL--YE 72
                8*************888..54 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0034       2.4       7      26 ..      13      32 ..      11      35 .. 0.76
   2 !   14.6   0.1   4.1e-05     0.029       6      28 ..      54      76 ..      53      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlealerl 26
                a ++y++g++de++ ++er 
  MMETSP0890-20130614|1980_1 13 AGLLYAQGKYDESKPLYERA 32
                44555566*********996 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.1e-05
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la ++y++g++deA+ ++er i+
  MMETSP0890-20130614|1980_1 54 LAALLYAQGKYDEAKPLYERAIE 76
                677777788***********997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   7.8e-07   0.00056      30      83 ..      11      73 ..       3      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 7.8e-07
                HHHHHHHH---HHHHHHHHHC......TSHCHCB...HHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2 30 alAlclylngeykrAyellrk......leldsss...lgcryllArcllklgkydeAiavLek 83
                +lA  ly +g+y++   l+++      ++l +++   +++   lA  l+++gkydeA  ++e+
  MMETSP0890-20130614|1980_1 11 NLAGLLYAQGKYDESKPLYERasrireEKLGPNHpdvAQSLNNLAALLYAQGKYDEAKPLYER 73
                57999*******99999999999999999999995544444477899**********999987 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.024        18       7      28 ..      12      33 ..       6      57 .. 0.81
   2 ?    8.9   0.1    0.0018       1.3      10      31 ..      57      78 ..      48      80 .] 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.024
   PF12688.2  7 ragarDstGeeakAvplYrrAl 28
                 ag     G+ ++  plY+rA 
  MMETSP0890-20130614|1980_1 12 LAGLLYAQGKYDESKPLYERAS 33
                5788888999*********995 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0018
   PF12688.2 10 arDstGeeakAvplYrrAlaaG 31
                     G+ ++A plY+rA++ G
  MMETSP0890-20130614|1980_1 57 LLYAQGKYDEAKPLYERAIEIG 78
                555789************9977 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   4.2e-05      0.03      16      72 ..      19      75 ..       5      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.2e-05
   PF14346.1 16 deeleeAeaalerAeaagaekyapveLeeAkekLaaAkaalaegkyeeArrlaeqAe 72
                + +++e++  +erA + + ek  p++ + A++  + A  ++a+gky+eA+ l e+A+
  MMETSP0890-20130614|1980_1 19 QGKYDESKPLYERASRIREEKLGPNHPDVAQSLNNLAALLYAQGKYDEAKPLYERAI 75
                56899999999**********999****************************99996 PP

>> PF13422.1  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0026       1.9      52      76 ..      16      40 ..      11      52 .. 0.85
   2 ?    4.6   0.0     0.035        25      52      68 ..      58      74 ..      53      80 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0026
   PF13422.1 52 dlAeerykelkeileeleeleeeqk 76
                  A+ +y+e k+++e+  + +ee+ 
  MMETSP0890-20130614|1980_1 16 LYAQGKYDESKPLYERASRIREEKL 40
                5699*************99999864 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.035
   PF13422.1 52 dlAeerykelkeileel 68
                  A+ +y+e+k+++e+ 
  MMETSP0890-20130614|1980_1 58 LYAQGKYDEAKPLYERA 74
                5799*********9986 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.41     3e+02      66      80 ..       2      16 ..       1      21 [. 0.84
   2 ?    9.3   0.0    0.0018       1.3      44      80 ..      21      58 ..      15      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.41
   PF14357.1 66 HPklagtlrnildsL 80
                HP+la  l+n++  L
  MMETSP0890-20130614|1980_1  2 HPDLATRLNNLAGLL 16
                9*****999998777 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0018
   PF14357.1 44 seaedeslaerlne.averFeaeHPklagtlrnildsL 80
                + +e+++l er ++   e+   +HP++a+ l+n++  L
  MMETSP0890-20130614|1980_1 21 KYDESKPLYERASRiREEKLGPNHPDVAQSLNNLAALL 58
                5678888999998877899999************9888 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.31   2.2e+02      18      33 ..      19      34 ..      13      38 .. 0.87
   2 ?    9.0   0.3    0.0016       1.1      18      34 ..      61      77 ..      48      80 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.31
                TT-HHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAle 33
                +gky+e   lY+ A  
  MMETSP0890-20130614|1980_1 19 QGKYDESKPLYERASR 34
                6999999999999875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0016
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +gky+eA  lY+ A+e+
  MMETSP0890-20130614|1980_1 61 QGKYDEAKPLYERAIEI 77
                79*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 286.13
//
Query:       MMETSP0890-20130614|1983_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   63.3   0.0    1.8e-17   62.8   0.0    1.3  1  PF05685.7 Putative restriction endonuclease
  ------ inclusion threshold ------
      0.089   12.5   0.0       0.17   11.5   0.0    1.4  1  PF05932.8 Tir chaperone protein (CesT) family
       0.12   11.9   1.2       0.41   10.2   0.2    2.2  2  PF13913.1 zinc-finger of a C2HC-type


Domain annotation for each model (and alignments):
>> PF05685.7  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   3.9e-21   1.8e-17       5     111 .]     131     243 ..     127     243 .. 0.94

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 3.9e-21
   PF05685.7   5 aglLaallelwveqrrlgvvfasdlgvyl..peeeserePDvsvvlge....elrlsyeeweelgaaPdlvvEVlspsteeedlgeKlelYaelgvpeywlvdpkertvevyr 111
                 +g+L ++l++w+e+ +lg v+++  g+y+  +  es   PD+s++ ++       l ++++  l+a+P++v+E+ s  ++ +  +eK+e Y +lgv  +wl++pk +tv++yr
  MMETSP0890-20130614|1983_1 131 EGELFRQLANWNEEYGLGSVYGGRGGFYFpdGSSESLFIPDASFITKDrkdkAVELLETDYSTLTAVPEFVIELISNEKSIRNETEKMENYMRLGVDLGWLIEPKAKTVTIYR 243
                 57899************************99778999***********99997777788888999***********************************************8 PP

>> PF05932.8  Tir chaperone protein (CesT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05      0.17      31      68 ..     105     142 ..      98     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.8e-05
                 -EEEEEETTTTEEEEEEEEE--TT----.-HHHHHHHH CS
   PF05932.8  31 aavleleedsdeLllsaplgrlppdedgallkrlLelN 68 
                   ++e+ +++ +L+l + lg++    +g+l+++l+++N
  MMETSP0890-20130614|1983_1 105 DIQVEYWHHERRLVLTCKLGSASAKGEGELFRQLANWN 142
                 56788899*****************************9 PP

>> PF13913.1  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   9.1e-05      0.41      14      25 .]      20      31 ..      19      31 .. 0.94
   2 ?   -0.5   0.0       0.2   9.3e+02      12      20 ..      49      57 ..      47      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.1e-05
   PF13913.1 14 pdrlakHepvCk 25
                p+rl++H++vC+
  MMETSP0890-20130614|1983_1 20 PSRLPRHVQVCS 31
                89*********7 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.2
   PF13913.1 12 FnpdrlakH 20
                F +d l kH
  MMETSP0890-20130614|1983_1 49 FTEDVLKKH 57
                889****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 971.50
//
Query:       MMETSP0890-20130614|1997_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|1999_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-05   23.9   0.0     0.0024   17.8   0.0    2.5  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    4.9e-05   23.0   0.0       0.11   12.3   0.0    2.7  2  PF13180.1  PDZ domain
  ------ inclusion threshold ------
      0.044   13.5   0.0       0.11   12.1   0.0    1.7  1  PF03484.10 tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.3e-07    0.0024      19      58 ..      15      54 ..       8      60 .. 0.81
   2 ?    3.4   0.0     0.017        75      39      72 ..     178     211 ..     167     222 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.3e-07
                SSTTS.SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGT CS
  PF00595.19 19 gsdkr.dkgifvsevvpggaaeagglkeGDkIlsvNgvdve 58
                ++d +  + i+vs v ++ +a+   ++eGD++++v+g+ ++
  MMETSP0890-20130614|1999_1 15 ENDRSdIRRIIVSTVKADTSAAET-VCEGDVLIAVGGQFIT 54
                445446799*********777777.7***********9776 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.017
                 TTTSBSTTCEEEEETTEBGTTS.HHHHHHHHHHTH CS
  PF00595.19  39 eagglkeGDkIlsvNgvdvenv.shdeavqaikgk 72 
                 +++ ++ GD++++++ +++  + +  + +  +  +
  MMETSP0890-20130614|1999_1 178 ARS-VRRGDILVGIDHEPLPMLiTSSDLQYRLSRA 211
                 455.999**********998875555555555555 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.4e-05      0.11      13      58 ..      21      68 ..      12      82 .. 0.73
   2 !    8.1   0.0   0.00046       2.1      28      71 ..     177     224 ..     107     231 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-05
   PF13180.1 13 trgvlvvsVkessPaakaglkpGDiilkvdgkkvksl...tdlkslllk 58
                 r++ v +Vk ++ aa+  +  GD++++v+g+ ++ +    +  s ++k
  MMETSP0890-20130614|1999_1 21 IRRIIVSTVKADTSAAET-VCEGDVLIAVGGQFITARtpsGEILSTISK 68
                567889999999999999.*************99555333455555554 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00046
   PF13180.1  28 akaglkpGDiilkvdgkkv...ksltdlkslll.kkkpGdtvkltvlR 71 
                 + + ++ GDi++ +d +++    +++dl+++l+  ++  + ++l++ R
  MMETSP0890-20130614|1999_1 177 DARSVRRGDILVGIDHEPLpmlITSSDLQYRLSrAGSTANPLTLNLFR 224
                 4455999***********9999999****9998777766666666666 PP

>> PF03484.10  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.5e-05      0.11      17      61 ..     197     241 ..     167     243 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
  PF03484.10  17 ielsddeiekiLkrlgfkvekndedslrvtvPsyRsDiqhevDli 61 
                 + ++  + +  L r g ++++ + + +rvt P+yR+ i++ +D++
  MMETSP0890-20130614|1999_1 197 MLITSSDLQYRLSRAGSTANPLTLNLFRVTDPTYRQRILTSCDIV 241
                 5677778888899999999999999*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 1258.09
//
Query:       MMETSP0890-20130614|2000_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    7.7  10.9       0.35    9.3   5.6    1.7  2  PF08317.6  Spc7 kinetochore protein
        3.9    7.7  13.7        2.3    8.4   0.0    3.3  4  PF06156.8  Protein of unknown function (DUF972)
        5.3    4.6   7.0        1.5    6.4   2.9    1.4  1  PF01496.14 V-type ATPase 116kDa subunit family
        6.2    5.5  15.5        1.6    7.5   8.4    1.6  2  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.28   9.7e+02      23      50 ..      37      71 ..      15     106 .. 0.55
   2 ?    9.3   5.6    0.0001      0.35     155     278 ..     103     232 ..      91     257 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.28
   PF08317.6 23 tnirFlddleieltttkrrsttlpdaa.......k 50
                  i F+d+le+ ++   ++ +  ++a        +
  MMETSP0890-20130614|2000_1 37 CVIFFMDELELLEEMAAQIDFEVQQAYdeneyedN 71
                44555555555555555555555544444444433 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0001
   PF08317.6 155 eenleelkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdseelekl.reeLssleekieekrkkleeleeelqelkkkiealkekkselleei...aeaekileec...rgfsakei 278
                  ++  +l ++ e l+ +  + +  l + ++  ++ k+e  + r+l+d  +  ++  lekl  + + +++e+ie +r++le    +l+ +++++e+ ++++s l+e+i   ++a++++ee+   ++++++++
  MMETSP0890-20130614|2000_1 103 RRRERGLARESERLDLEYDARQADLAAAQAERAEAKKETLKARELRDGYT-GERRALEKLlGQAVYEHSEDIELRRRELEVTAGDLKRIDQDLEKISNEISSLNEQIlfmQNARSVMEEEtalKTCQKHDV 232
                 55555666666666666555555555666666666666666677777444.4555666651567899***************************************9555566666665423345555555 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.6   1.2e+04      49      56 ..      15      22 ..       6      29 .. 0.41
   2 ?    0.3   0.2      0.23   7.9e+02      19      50 ..      47      78 ..      40      87 .. 0.69
   3 ?    6.9   0.7     0.002       6.7      14      68 ..      89     143 ..      82     164 .. 0.77
   4 ?    8.4   0.0   0.00068       2.3       4      49 ..     188     232 ..     184     264 .. 0.57

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.6
   PF06156.8 49 rerleele 56
                 ++l++++
  MMETSP0890-20130614|2000_1 15 DQQLQQTT 22
                22222222 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.23
   PF06156.8 19 elleeleelkkelkelleenaelkleneklre 50
                 l e  +++  e+++ ++en+  + en+ + e
  MMETSP0890-20130614|2000_1 47 LLEEMAAQIDFEVQQAYDENEYEDNENTMMTE 78
                44444556777788888888887777776655 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.002
   PF06156.8  14 eeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkk 68 
                 + +le+ ++e+++l+++   l  e ++l+le ++ +  l+  ++e+++++k++ k
  MMETSP0890-20130614|2000_1  89 SMRLETAQTECTRLRRRERGLARESERLDLEYDARQADLAAAQAERAEAKKETLK 143
                 667889999*************************999999988754444443322 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.00068
   PF06156.8   4 kelfdklseleeqleelleeleelkkelkelleenaelkleneklr 49 
                 k + + l+++++++++l+e++  +++   +++ee+++lk+  ++  
  MMETSP0890-20130614|2000_1 188 KRIDQDLEKISNEISSLNEQILFMQN-ARSVMEEETALKTCQKHDV 232
                 45667788888888888888877754.5677777788876555422 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.9   0.00044       1.5      40     128 ..     144     239 ..     116     257 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00044
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXX..... CS
  PF01496.14  40 lrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.......veelrelssl 128
                  r l++  + ++ +l++   +  +++s+++e +++ele +  +lk++++ le++++e+++l+e+  +++++++ +ee+         + + + s +
  MMETSP0890-20130614|2000_1 144 ARELRDGYTGERRALEKLLGQAVYEHSEDIELRRRELEVTAGDLKRIDQDLEKISNEISSLNEQILFMQNARSVMEEETalktcqkHDVIDDSSTT 239
                 4556666666666666777788888899999999999*************************************9997664433333333333333 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.31     1e+03     125     158 ..       8      41 ..       4      62 .. 0.73
   2 ?    7.5   8.4   0.00046       1.6      23     140 ..     100     213 ..      87     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.31
   PF10186.4 125 qeeikrtksklnslesltaekRsqlcrelaklfp 158
                 ++e++r++++l+++++   + R+  +   + +f 
  MMETSP0890-20130614|2000_1   8 KAESHRADQQLQQTTNHAKKCRDLWFVDCCVIFF 41 
                 5667777777777777777777777666666665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00046
   PF10186.4  23 lelrlrlanlkaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqk.rerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnsles 140
                 ++lr r + l +e e+l  +++++ +     +  aaq+ ++e ++ + + +++r+     ++++e++  + + e +e+++ rr+ le +a+  kr+ ++l+k+++ei+ +++++  +++
  MMETSP0890-20130614|2000_1 100 TRLRRRERGLARESERLDLEYDARQA-----DLAAAQAERAEAKKETLKARELRDGYTGERRALEKLlGQAVYEHSEDIELRRRELEVTAGDLKRIDQDLEKISNEISSLNEQILFMQN 213
                 55666667777777777777777777.....**********************************9636889999**********************************9999876444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       981  (0.0717525); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.44s 00:00:01.13 Elapsed: 00:00:00.76
# Mc/sec: 857.64
//
Query:       MMETSP0890-20130614|2014_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-18   64.3   2.6    1.2e-13   50.3   0.1    2.3  2  PF13414.1  TPR repeat
    1.8e-09   36.6   0.3       0.06   12.8   0.0    3.4  3  PF00515.23 Tetratricopeptide repeat
    1.9e-05   24.1   2.4       0.23   11.3   0.1    3.4  3  PF07719.12 Tetratricopeptide repeat
    0.00057   19.6   7.8     0.0089   15.8   0.0    2.8  3  PF13424.1  Tetratricopeptide repeat
    0.00096   19.6   6.3       0.37   11.4   0.6    2.8  3  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.077   12.6   0.7         27    4.7   0.0    3.3  3  PF13181.1  Tetratricopeptide repeat
       0.16   12.5   3.6         11    6.8   0.4    3.1  3  PF13428.1  Tetratricopeptide repeat
       0.23   11.1   1.9       0.14   11.8   0.1    1.5  2  PF01935.12 Domain of unknown function DUF87
       0.55   10.0   3.9         18    5.1   0.1    3.1  4  PF13371.1  Tetratricopeptide repeat
       0.71   10.3   3.7        3.8    8.0   0.6    3.1  3  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   8.8e-17   1.2e-13       4      68 ..      49     116 ..      46     117 .. 0.90
   2 !   21.5   0.3   8.6e-08   0.00012      22      69 .]     105     151 ..     103     151 .. 0.93

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 8.8e-17
   PF13414.1   4 ealkelGnalfkegdydeAieayekAlel....dpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 ++++ +Gn++f eg+y  Aie+y+kAl+      +++a++++n+A + l+lg   + A+ed+++A+ ld
  MMETSP0890-20130614|2014_1  49 YEARDKGNRFFAEGEYTLAIEEYSKALKEvmddTKKSAQILCNRAMCQLRLG-VSHLAVEDCSMAIMLD 116
                 67899***********************744433779***************.9***********9887 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 8.6e-08
   PF13414.1  22 AieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 A+e ++ A+ ld+++a++ y+lA++++  g+ + +A+++++ Al+l P
  MMETSP0890-20130614|2014_1 105 AVEDCSMAIMLDSSSAKAQYRLAQSLRSTGDLW-SAARAAKSALKLLP 151
                 999***************************987.7999******9976 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00067      0.92      11      29 ..      58      76 ..      53      77 .. 0.90
   2 !   12.8   0.0   4.4e-05      0.06       1      32 [.      86     117 ..      86     119 .. 0.94
   3 !   11.1   0.0   0.00016      0.21       1      32 [.     120     151 ..     120     152 .. 0.96

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00067
                HHHTT-HHHHHHHHHHHHH CS
  PF00515.23 11 ylklgkydeAleyyekALe 29
                ++  g+y  A+e y+kAL+
  MMETSP0890-20130614|2014_1 58 FFAEGEYTLAIEEYSKALK 76
                7899**************7 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a++l+n+++++l+lg    A+e+++ A+ l+ 
  MMETSP0890-20130614|2014_1  86 AQILCNRAMCQLRLGVSHLAVEDCSMAIMLDS 117
                 789*************************9997 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 aka y+l++ +++ g++  A  + + AL+l P
  MMETSP0890-20130614|2014_1 120 AKAQYRLAQSLRSTGDLWSAARAAKSALKLLP 151
                 89***************************977 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00017      0.23       7      30 ..      54      77 ..      50      81 .. 0.89
   2 ?    1.3   0.0      0.26   3.5e+02       1      15 [.      86     100 ..      86     118 .. 0.73
   3 !    9.2   0.2   0.00081       1.1       1      32 [.     120     151 ..     120     151 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00017
                HHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  7 lGlayyklgdyeeAleafekAlel 30
                 G+  ++ g+y  A+e + kAl+ 
  MMETSP0890-20130614|2014_1 54 KGNRFFAEGEYTLAIEEYSKALKE 77
                68999*****************96 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHTT CS
  PF07719.12   1 aealynlGlayyklg 15 
                 a++l+n++++ ++lg
  MMETSP0890-20130614|2014_1  86 AQILCNRAMCQLRLG 100
                 678999****99998 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a+a y+l+++++  gd+  A++a + Al+l P
  MMETSP0890-20130614|2014_1 120 AKAQYRLAQSLRSTGDLWSAARAAKSALKLLP 151
                 789**************************987 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.5e-06    0.0089      11      65 ..      54     105 ..      45     118 .. 0.82
   2 !    7.6   0.4    0.0023       3.1      46      75 ..     120     149 ..     115     151 .. 0.88
   3 ?   -1.5   0.1       1.6   2.2e+03      30      54 ..     168     192 ..     159     199 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.5e-06
   PF13424.1  11 lalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeA 65 
                  ++ ++++g+y  A+e y kal   +e+ dd    a +l n a ++l+lg    A
  MMETSP0890-20130614|2014_1  54 KGNRFFAEGEYTLAIEEYSKAL---KEVMDDTKKSAQILCNRAMCQLRLGVSHLA 105
                 578899***************9...4455555677*************9965555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0023
   PF13424.1  46 aralnnlanlylalgdydeAleylekAlei 75 
                 a+a + la+ ++  gd+ +A +  + Al++
  MMETSP0890-20130614|2014_1 120 AKAQYRLAQSLRSTGDLWSAARAAKSALKL 149
                 889999****************99999998 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.6
   PF13424.1  30 kalellrelgddhpdtaralnnlan 54 
                 + le ++++ d+h + a + +  an
  MMETSP0890-20130614|2014_1 168 TILEEAARADDRHERAAASERRKAN 192
                 4455555666666666666555555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00047      0.64       2      45 ..      53     100 ..      52     119 .. 0.89
   2 !   11.4   0.6   0.00027      0.37      29      62 ..     118     151 ..     105     154 .. 0.90
   3 ?   -2.4   0.5       5.5   7.5e+03      40      51 ..     173     184 ..     169     191 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00047
   PF13432.1   2 alArallraGdydeAlaaleaalala....Peaaeallllaeallrlg 45 
                 ++++ +++ G+y  A++ +++al++      + a++l ++a++ lrlg
  MMETSP0890-20130614|2014_1  53 DKGNRFFAEGEYTLAIEEYSKALKEVmddtKKSAQILCNRAMCQLRLG 100
                 68999*********************9999889999999999999887 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00027
   PF13432.1  29 eaaeallllaeallrlgrldeAaallraalalaP 62 
                   a a+++la++l   g+l  Aa++ ++al+l P
  MMETSP0890-20130614|2014_1 118 SSAKAQYRLAQSLRSTGDLWSAARAAKSALKLLP 151
                 4799************************999877 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 5.5
   PF13432.1  40 allrlgrldeAa 51 
                 a+ +  r+++Aa
  MMETSP0890-20130614|2014_1 173 AARADDRHERAA 184
                 333333333333 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.049        67      14      29 ..      61      76 ..      58      77 .. 0.89
   2 ?    0.5   0.0      0.43   5.8e+02       2      22 ..      87     107 ..      86     116 .. 0.86
   3 ?    4.7   0.0      0.02        27       2      32 ..     121     151 ..     120     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.049
                TT-HHHHHHHHH---H CS
   PF13181.1 14 lGdydkAkeylekale 29
                 G+y +A+e + kal+
  MMETSP0890-20130614|2014_1 61 EGEYTLAIEEYSKALK 76
                699***********97 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.43
                 --TTT---HHHHTT-HHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAke 22 
                 ++++n++++ + lG  ++A e
  MMETSP0890-20130614|2014_1  87 QILCNRAMCQLRLGVSHLAVE 107
                 7899*********98888876 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.02
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ka y+l++ +r++Gd  +A  + + al+l p
  MMETSP0890-20130614|2014_1 121 KAQYRLAQSLRSTGDLWSAARAAKSALKLLP 151
                 788*************888888888888755 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.026        35       8      33 ..      55      80 ..      50      95 .. 0.80
   2 ?    6.8   0.4    0.0082        11       2      32 ..     121     151 ..     120     163 .. 0.83
   3 ?   -1.8   0.0       4.8   6.5e+03      24      33 ..     170     179 ..     161     188 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.026
   PF13428.1  8 arallalGdpdeAiallrralalaPd 33
                ++ ++a G++  Ai+ + +al+   d
  MMETSP0890-20130614|2014_1 55 GNRFFAEGEYTLAIEEYSKALKEVMD 80
                5678999**************96544 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0082
   PF13428.1   2 eallalarallalGdpdeAiallrralalaP 32 
                 +a+++la+ l+  Gd+  A+++++ al+l P
  MMETSP0890-20130614|2014_1 121 KAQYRLAQSLRSTGDLWSAARAAKSALKLLP 151
                 799************9889999999998877 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 4.8
   PF13428.1  24 lrralalaPd 33 
                 l++a++++  
  MMETSP0890-20130614|2014_1 170 LEEAARADDR 179
                 4444433332 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1    0.0001      0.14      63     206 ..      70     226 ..      61     240 .. 0.73
   2 ?   -3.5   0.1       4.7   6.5e+03     118     148 ..     276     306 ..     262     308 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0001
  PF01935.12  63 EYgkal...ekllsekvkvitpspeakdtelkinpwsldpeelldlleelkddepaaeaqrsvleealeqaka..............keekeklssdepveklleelkkekeelrklknqairrlldklerllrkggsfsnsstdliallleklekegkit 206
                 EY+kal    + +++ ++++ ++    + +l++ +++l +e+ +  ++   +  +a  ++ + l+++ + + a                  +++++++++  +lee   +++++++ +  ++rr+ + + +l ++gg +s  ++++ ++ +++ ++e+++ 
  MMETSP0890-20130614|2014_1  70 EYSKALkevMDDTKKSAQILCNR---AMCQLRLGVSHLAVEDCSMAIMLDSSSAKAQYRLAQSLRSTGDLWSAaraaksalkllpvdVPTLQQTQTQDLLVTILEEAA-RADDRHERAAASERRKANLVAKLAKRGGVKSVVPKSIPRENEKEDNRERSVK 226
                 88888866666777777777776...899*******************944444444445555555555555588899999999999455555555555555666666.5778888888888999999999999999888888888888877777777665 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.7
  PF01935.12 118 aqrsvleealeqakakeekeklssdepvekl 148
                 +++  ++++ ++ + ++++ k+s ++ v+++
  MMETSP0890-20130614|2014_1 276 RLEMNFRYMEKKKVPTKKNVKISKKDQVAQV 306
                 3333333333333336666666666666555 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.014        19      28      62 ..      47      81 ..      43      89 .. 0.86
   2 ?    5.1   0.1     0.013        18      34      68 ..      91     126 ..      83     132 .. 0.76
   3 ?   -2.1   0.0       2.3   3.1e+03       5      28 ..     130     153 ..     126     158 .. 0.71
   4 ?   -2.2   0.1       2.6   3.5e+03      28      40 ..     175     187 ..     161     195 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.014
   PF13371.1 28 dpyerRDrGlllaqlgclaaAaedLeaflelcpda 62
                + ye RD G   +  g+++ A+e+++ +l+  +d+
  MMETSP0890-20130614|2014_1 47 QIYEARDKGNRFFAEGEYTLAIEEYSKALKEVMDD 81
                679*************************9776655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.013
   PF13371.1  34 DrGlllaqlgclaaAaedLeaflelcp.dapdaeli 68 
                  r++++ +lg  + A+ed + ++ l+  +a + +++
  MMETSP0890-20130614|2014_1  91 NRAMCQLRLGVSHLAVEDCSMAIMLDSsSAKAQYRL 126
                 79****************998885555355555554 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.3
   PF13371.1   5 ylreedferALavverllllaPdd 28 
                 + + +d  +A +++ + l l P d
  MMETSP0890-20130614|2014_1 130 LRSTGDLWSAARAAKSALKLLPVD 153
                 556666777888888888888876 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.6
   PF13371.1  28 dpyerRDrGllla 40 
                 ++ +r +r+ + +
  MMETSP0890-20130614|2014_1 175 RADDRHERAAASE 187
                 3344444444443 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.67   9.2e+02      11      29 ..      59      77 ..      48      78 .. 0.80
   2 ?   -0.9   0.0       1.9   2.6e+03       6      19 ..      92     105 ..      91     108 .. 0.67
   3 ?    8.0   0.6    0.0028       3.8       2      22 ..     122     143 ..     121     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.67
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1 11 yklgdtdeAlealerlike 29
                ++ g+++ A+e + + +ke
  MMETSP0890-20130614|2014_1 59 FAEGEYTLAIEEYSKALKE 77
                4447999999999999886 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeA 19 
                 +a+++++lg +  A
  MMETSP0890-20130614|2014_1  92 RAMCQLRLGVSHLA 105
                 68888887665555 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHH.HHHHHHHHHH CS
   PF13174.1   2 Alyklalsyyk.lgdtdeAlea 22 
                 A+y+la+s++  ++ +++A++a
  MMETSP0890-20130614|2014_1 122 AQYRLAQSLRStGDLWSAARAA 143
                 99*********66699988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       807  (0.0590257); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.69
# Mc/sec: 1083.57
//
Query:       MMETSP0890-20130614|2018_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.3   3.4      0.012   15.2   2.4    1.0  1  PF13229.1  Right handed beta helix region
      0.082   13.0   5.0        2.2    8.6   0.1    2.9  3  PF02415.12 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
       0.57    9.9   4.2        9.3    6.0   0.1    2.2  2  PF04088.8  Peroxin 13, N-terminal region


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   2.4   2.7e-06     0.012     104     158 .]       3      62 ..       1      62 [. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.7e-06
   PF13229.1 104 itnNtisnng....gsGiyvegsssgnititnntisnng...gaGiylinsssgitvsnNti 158
                  tn+ +++n+    g   yv++ss  ++t tn ++ +n+   ++G++++  ss +t +n+++
  MMETSP0890-20130614|2018_1   3 ATNSSFDSNSaqdrGGVAYVYASS--TFTATNSSFDSNSadwNGGVAYVQDSSTFTATNSSF 62 
                 456666666666544666777777..9999*********9*999******999999999875 PP

>> PF02415.12  Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0022       9.9       2      25 ..       6      20 ..       5      23 .. 0.81
   2 ?    8.6   0.1   0.00048       2.2       2      26 ..      33      48 ..      32      50 .. 0.85
   3 ?   -2.6   0.1       1.7   7.7e+03      15      15 ..      57      57 ..      52      61 .. 0.48

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0022
  PF02415.12  2 itFsnNtatvsftptpaaggGGAI 25
                 +F +N+a            GG  
  MMETSP0890-20130614|2018_1  6 SSFDSNSA---------QDRGGVA 20
                69******.........8888865 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00048
  PF02415.12  2 itFsnNtatvsftptpaaggGGAIy 26
                 +F +N+a         + +GG  y
  MMETSP0890-20130614|2018_1 33 SSFDSNSA---------DWNGGVAY 48
                69******.........*****877 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.7
  PF02415.12 15 p 15
                +
  MMETSP0890-20130614|2018_1 57 A 57
                2 PP

>> PF04088.8  Peroxin 13, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0024        11      39      57 ..      17      36 ..       3      38 .. 0.83
   2 ?    6.0   0.1     0.002       9.3      39      56 ..      44      62 ..      43      63 .] 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0024
   PF04088.8 39 ggfAqmL.esTymAthsSFf 57
                gg+A +   sT+ At sSF 
  MMETSP0890-20130614|2018_1 17 GGVAYVYaSSTFTATNSSFD 36
                6666664258*********5 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.002
   PF04088.8 39 ggfAqmLe.sTymAthsSF 56
                gg+A + + sT+ At sSF
  MMETSP0890-20130614|2018_1 44 GGVAYVQDsSTFTATNSSF 62
                6788887736********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 222.02
//
Query:       MMETSP0890-20130614|2019_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-33  111.5   4.3    4.4e-13   48.4   0.1    3.0  3  PF00400.27 WD domain, G-beta repeat
    9.1e-06   24.0   1.3      0.041   11.9   0.0    2.0  2  PF11715.3  Nucleoporin Nup120/160
      3e-05   23.4   0.3       0.47   10.0   0.0    3.3  3  PF07676.7  WD40-like Beta Propeller Repeat
     0.0011   18.2   0.1        1.2    8.4   0.0    2.2  2  PF02495.12 7kD viral coat protein
     0.0014   18.3   0.0      0.011   15.2   0.0    2.2  1  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.011   14.7   0.1       0.23   10.3   0.0    1.9  2  PF06869.7  Protein of unknown function (DUF1258)
      0.058   12.6   0.2        2.3    7.4   0.1    2.2  2  PF10647.4  Lipoprotein LpqB beta-propeller domain
      0.062   12.6   0.0      0.075   12.3   0.0    1.1  1  PF13360.1  PQQ-like domain
      0.065   12.8   0.7       0.64    9.6   0.1    2.4  3  PF10313.4  Uncharacterised protein domain (DUF2415)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   9.8e-09   1.5e-05      18      39 .]       1      22 [.       1      22 [. 0.97
   2 !   48.4   0.1   2.9e-16   4.4e-13       3      39 .]      28      64 ..      26      64 .. 0.95
   3 !   39.6   0.0   1.8e-13   2.7e-10       2      38 ..      69     105 .]      68     105 .] 0.94

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 9.8e-09
                EEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 18 afspdgpllasgSrDgtirlWd 39
                +fs dg++++++SrD+t ++Wd
  MMETSP0890-20130614|2019_1  1 KFSKDGRRVVTASRDRTAKIWD 22
                69*******************9 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 2.9e-16
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++ tl+gHts V++++fspdg++++++S D+t r+W+
  MMETSP0890-20130614|2019_1 28 LLLTLSGHTSYVNACDFSPDGTRVITASNDSTARIWN 64
                6889********************************7 PP

  == domain 3    score: 39.6 bits;  conditional E-value: 1.8e-13
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 +++ +l+gHt +V+++afspdg+++++++ Dg+ r++
  MMETSP0890-20130614|2019_1  69 TLILVLEGHTLAVRSCAFSPDGSRIITACGDGKARVF 105
                 67889*****************************996 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   3.7e-05     0.056     234     256 ..       9      31 ..       3      37 .. 0.83
   2 !   11.9   0.0   2.7e-05     0.041     216     257 ..      37      74 ..      32     103 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.7e-05
   PF11715.3 234 vftlsrDgkLRvWnletgqclrt 256
                 v+t srD++ ++W++ tg +l t
  MMETSP0890-20130614|2019_1   9 VVTASRDRTAKIWDTLTGRLLLT 31 
                 55****************99555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.7e-05
   PF11715.3 216 saaasldvsssevegqtfvftlsrDgkLRvWnletgqclrtt 257
                 s +++ d+s+    + t v+t s D + R+Wn e+g+++ + 
  MMETSP0890-20130614|2019_1  37 SYVNACDFSP----DGTRVITASNDSTARIWNAENGTLILVL 74 
                 5566777777....667788*****************93332 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.039        60      16      24 ..       2      10 ..       1      17 [. 0.87
   2 !    6.8   0.0    0.0031       4.7      15      27 ..      43      55 ..      35      63 .. 0.81
   3 !   10.0   0.0   0.00031      0.47      14      24 ..      84      94 ..      82      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.039
                E-----EEE CS
   PF07676.7 16 wSPDGkkiv 24
                +S+DG++ v
  MMETSP0890-20130614|2019_1  2 FSKDGRRVV 10
                9*****987 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0031
                EE-----EEEEEE CS
   PF07676.7 15 awSPDGkkivFtS 27
                 +SPDG++ + +S
  MMETSP0890-20130614|2019_1 43 DFSPDGTRVITAS 55
                69*****987555 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00031
                EEE-----EEE CS
   PF07676.7 14 PawSPDGkkiv 24
                 a+SPDG++i+
  MMETSP0890-20130614|2019_1 84 CAFSPDGSRII 94
                69*******96 PP

>> PF02495.12  7kD viral coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00081       1.2      30      51 ..      31      52 ..      25      56 .. 0.88
   2 !    7.9   0.0    0.0012       1.9      28      51 ..      71      94 ..      60      97 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00081
  PF02495.12 30 vITGesvtitgCeitpefieal 51
                 ++G+   ++ C ++p+  +++
  MMETSP0890-20130614|2019_1 31 TLSGHTSYVNACDFSPDGTRVI 52
                689**************99998 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0012
  PF02495.12 28 vivITGesvtitgCeitpefieal 51
                + v+ G+   ++ C ++p+  + +
  MMETSP0890-20130614|2019_1 71 ILVLEGHTLAVRSCAFSPDGSRII 94
                56889*************987766 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.5e-06     0.011      80     163 ..      13      98 ..       9     104 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.5e-06
   PF08662.6  80 kmpakislfdl...kvnvisklkekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkia..kaeasnatlvewspdgryvlTatt 163
                   +++++++d    ++ ++ + ++++ N+  +sp g+ v++a   ++     i++ ++ + i   + +     ++ +spdg  ++Ta  
  MMETSP0890-20130614|2019_1  13 SRDRTAKIWDTltgRLLLTLSGHTSYVNACDFSPDGTRVITASNDST---ARIWNAENGTLILvlEGHTLAVRSCAFSPDGSRIITACG 98 
                 55666777776522233344445667788888888888888877666...678888855554400444455557888888888888865 PP

>> PF06869.7  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0074        11     145     190 ..       9      57 ..       6      60 .. 0.82
   2 ?   10.3   0.0   0.00015      0.23     145     193 ..      51     102 ..      47     105 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0074
   PF06869.7 145 ivecsenpstalwnaliplilsdveahsgrvknitfs...ckittisad 190
                 +v  s + ++ +w++l + +l  +  h+  v+   fs    ++ t s d
  MMETSP0890-20130614|2019_1   9 VVTASRDRTAKIWDTLTGRLLLTLSGHTSYVNACDFSpdgTRVITASND 57 
                 688899999***********************99998333456666666 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00015
   PF06869.7 145 ivecsenpstalwnaliplilsdveahsgrvknitfs...ckittisadqpa 193
                 ++  s++ ++ +wna  ++++  +e h+  v+  +fs    +i t + d  a
  MMETSP0890-20130614|2019_1  51 VITASNDSTARIWNAENGTLILVLEGHTLAVRSCAFSpdgSRIITACGDGKA 102
                 56778889999*************************8445689999999776 PP

>> PF10647.4  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0015       2.3      84     137 ..       5      61 ..       1      66 [. 0.68
   2 ?    3.3   0.0     0.027        42     113     130 ..      80      97 ..      69     105 .] 0.68

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0015
   PF10647.4  84 dgatvarvlrddat....gttepvevdapalsgrvtelrvSrDGtRvavvveragggq 137
                 dg++v+ + rd+++      t +  + +++ ++ v +   S+DGtRv   + ++++++
  MMETSP0890-20130614|2019_1   5 DGRRVVTASRDRTAkiwdTLTGRLLLTLSGHTSYVNACDFSPDGTRVITAS-NDSTAR 61 
                 6777777777666633333344667777777779*************8877.444555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.027
   PF10647.4 113 rvtelrvSrDGtRvavvv 130
                  v++ + S+DG R+    
  MMETSP0890-20130614|2019_1  80 AVRSCAFSPDGSRIITAC 97 
                 788888888888887655 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     5e-05     0.075      35     132 ..       5     100 ..       3     105 .] 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5e-05
   PF13360.1  35 dggtlfvasakgrlvaldaatGkvlWskslegeiega.p.lvaggrvvvvtadnslvaldaetGkllWssqlrsepiarlrssaspaia..gdrvivgfssg 132
                 dg+++++as++++   +d+ tG++l + s     ++a     +g rv+ +++d++ +  +ae+G+l+    ++       + ++s+a++  g r+i ++ +g
  MMETSP0890-20130614|2019_1   5 DGRRVVTASRDRTAKIWDTLTGRLLLTLSGHTSYVNAcDfSPDGTRVITASNDSTARIWNAENGTLILV-LEGH-----TLAVRSCAFSpdGSRIITACGDG 100
                 799**************************8555555555599999999999999**********99766.3333.....23344455555555655555555 PP

>> PF10313.4  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.85   1.3e+03      17      28 ..      29      40 ..      16      44 .. 0.74
   2 ?    0.1   0.0      0.39     6e+02       5      12 ..      41      48 ..      39      50 .. 0.81
   3 ?    9.6   0.1   0.00042      0.64       2      12 ..      80      90 ..      80      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.85
   PF10313.4 17 LLvisEhvGrvH 28
                LL  s h ++v 
  MMETSP0890-20130614|2019_1 29 LLTLSGHTSYVN 40
                888999999986 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.39
   PF10313.4  5 vckFSpes 12
                +c FSp  
  MMETSP0890-20130614|2019_1 41 ACDFSPDG 48
                69***975 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00042
   PF10313.4  2 AfRvckFSpes 12
                A+R+c+FSp  
  MMETSP0890-20130614|2019_1 80 AVRSCAFSPDG 90
                9*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 441.43
//
Query:       MMETSP0890-20130614|2009_1  [L=890]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.19u 0.37s 00:00:01.56 Elapsed: 00:00:01.39
# Mc/sec: 1534.36
//
Query:       MMETSP0890-20130614|2028_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-57  191.1   0.5    2.7e-17   61.8   0.0    3.0  4  PF13475.1 Domain of unknown function (DUF4116)
      4e-05   23.1   0.0         12    5.5   0.0    3.9  4  PF07892.6 Protein of unknown function (DUF1667)
    0.00011   22.2   0.3       0.26   11.3   0.0    3.3  3  PF09575.5 Small spore protein J (Spore_SspJ)
  ------ inclusion threshold ------
      0.086   11.8   0.6        7.7    5.5   0.0    3.4  4  PF12408.3 Ribose-5-phosphate isomerase
       0.13   12.3   0.0       0.15   12.1   0.0    1.1  1  PF13385.1 Concanavalin A-like lectin/glucanases superfamily


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.4e-14   3.7e-11      17      49 .]       1      33 [.       1      33 [. 0.97
   2 !   61.8   0.0     1e-20   2.7e-17       1      49 []      10      58 ..      10      58 .. 0.99
   3 !   54.3   0.0   2.2e-18   5.9e-15       1      48 [.      35      82 ..      35      83 .. 0.98
   4 !   44.6   0.0   2.3e-15   6.3e-12       1      37 [.      60      96 .]      60      96 .] 0.98

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.4e-14
   PF13475.1 17 kylseeLknDkeivlkAvkqngsalsyaseeLr 49
                +y+s eLknD+eiv  Av qng+al+yas eL+
  MMETSP0890-20130614|2028_1  1 EYASQELKNDREIVRIAVTQNGYALEYASQELK 33
                69*****************************97 PP

  == domain 2    score: 61.8 bits;  conditional E-value: 1e-20
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrEiv  av++ng+al+y+s eLknD eivl+Av  n +al+ya eeL+
  MMETSP0890-20130614|2028_1 10 DREIVRIAVTQNGYALEYASQELKNDPEIVLAAVTENDKALEYANEELQ 58
                9**********************************************97 PP

  == domain 3    score: 54.3 bits;  conditional E-value: 2.2e-18
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
                D Eivl+av+ n +al+y++eeL+ D++++l+Av qng +l ya eeL
  MMETSP0890-20130614|2028_1 35 DPEIVLAAVTENDKALEYANEELQDDRDFLLAAVTQNGQVLFYANEEL 82
                89********************************************98 PP

  == domain 4    score: 44.6 bits;  conditional E-value: 2.3e-15
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqn 37
                Dr+++l+av++ng +l y++eeL nD+eivl+Av q+
  MMETSP0890-20130614|2028_1 60 DRDFLLAAVTQNGQVLFYANEELENDREIVLAAVTQD 96
                9*********************************986 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0048        13       5      25 ..       1      21 [.       1      25 [. 0.87
   2 !    5.5   0.0    0.0046        12       4      24 ..      25      45 ..      22      50 .. 0.85
   3 !    5.5   0.0    0.0045        12       2      26 ..      48      72 ..      47      76 .. 0.86
   4 ?    3.2   0.0     0.023        64       6      23 ..      77      94 ..      73      96 .] 0.89

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0048
   PF07892.6  5 eYakkeltnpkriltstVkve 25
                eYa +el+n + i+   V  +
  MMETSP0890-20130614|2028_1  1 EYASQELKNDREIVRIAVTQN 21
                7*************9998765 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0046
   PF07892.6  4 eeYakkeltnpkriltstVkv 24
                 eYa +el+n   i+ + V  
  MMETSP0890-20130614|2028_1 25 LEYASQELKNDPEIVLAAVTE 45
                69***********99999875 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0045
   PF07892.6  2 rGeeYakkeltnpkriltstVkveg 26
                +  eYa++el++ ++ l + V  +g
  MMETSP0890-20130614|2028_1 48 KALEYANEELQDDRDFLLAAVTQNG 72
                6789*************99998766 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.023
   PF07892.6  6 YakkeltnpkriltstVk 23
                Ya++el+n + i+ + V 
  MMETSP0890-20130614|2028_1 77 YANEELENDREIVLAAVT 94
                9************99885 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.068   1.9e+02      24      33 ..       1      10 [.       1      14 [. 0.90
   2 !   11.3   0.0   9.6e-05      0.26      22      34 ..      24      36 ..      17      39 .. 0.91
   3 !    5.0   0.1    0.0092        25      20      33 ..      47      60 ..      42      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.068
   PF09575.5 24 EdAgkaLkgD 33
                E A+++Lk+D
  MMETSP0890-20130614|2028_1  1 EYASQELKND 10
                679*****99 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 9.6e-05
   PF09575.5 22 aLEdAgkaLkgDP 34
                aLE A+++Lk+DP
  MMETSP0890-20130614|2028_1 24 ALEYASQELKNDP 36
                8***********9 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0092
   PF09575.5 20 dgaLEdAgkaLkgD 33
                d aLE A ++L++D
  MMETSP0890-20130614|2028_1 47 DKALEYANEELQDD 60
                689**********9 PP

>> PF12408.3  Ribose-5-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.1   2.8e+02      15      24 ..      10      19 ..       7      22 .. 0.88
   2 ?   -0.0   0.0      0.15   4.2e+02      15      24 ..      35      44 ..      32      47 .. 0.87
   3 ?    5.5   0.0    0.0028       7.7      15      35 ..      60      79 ..      57      89 .. 0.90
   4 ?    0.1   0.0      0.14   3.9e+02      15      24 ..      85      94 ..      82      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.1
   PF12408.3 15 DqdLvKtAvs 24
                D+++v+ Av+
  MMETSP0890-20130614|2028_1 10 DREIVRIAVT 19
                9*****9997 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.15
   PF12408.3 15 DqdLvKtAvs 24
                D+++v +Av+
  MMETSP0890-20130614|2028_1 35 DPEIVLAAVT 44
                99*****997 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0028
   PF12408.3 15 DqdLvKtAvsGekFqecFFan 35
                D+d++ +Av+ +  q +F+an
  MMETSP0890-20130614|2028_1 60 DRDFLLAAVT-QNGQVLFYAN 79
                9*********.9999999999 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.14
   PF12408.3 15 DqdLvKtAvs 24
                D+++v +Av+
  MMETSP0890-20130614|2028_1 85 DREIVLAAVT 94
                9*******97 PP

>> PF13385.1  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.5e-05      0.15      47     112 ..      18      87 ..       4      94 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.5e-05
                 --------EEETTS.....EEE------.....---.-E-E--TT-EEEEEEEEETTE-EEEE--------- CS
   PF13385.1  47 sgengwglgldggg.....klrftvgggggkgqtvt.sdsavpdgkWhhvavtydggtvklYvnGelvgstt 112
                  ++ng++l + ++       + +   ++++k  ++  ++++++d++   +a++ ++g+v +Y n el + ++
  MMETSP0890-20130614|2028_1  18 VTQNGYALEYASQElkndpEIVLAAVTENDK--ALEyANEELQDDRDFLLAAVTQNGQVLFYANEELENDRE 87 
                 5678899987444444434666655555433..3333689**************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 338.31
//
Query:       MMETSP0890-20130614|2033_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 341.02
//
Query:       MMETSP0890-20130614|2034_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-17   61.7   1.1    7.2e-08   31.9   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    3.4e-15   55.6   0.0    3.6e-15   55.5   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
      6e-08   31.8   0.1    0.00032   20.1   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    6.8e-08   31.6   1.9    0.00092   18.6   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    6.3e-07   28.8   0.1      1e-06   28.1   0.1    1.4  1  PF13414.1  TPR repeat
    1.2e-06   27.8   1.0     0.0041   16.8   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    0.00011   21.5   0.8      0.034   13.7   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    0.00052   20.4   0.0    0.00071   20.0   0.0    1.3  1  PF13432.1  Tetratricopeptide repeat
    0.00052   20.2   0.0        0.7   10.5   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
     0.0022   17.9   0.2     0.0095   15.9   0.2    1.9  1  PF13431.1  Tetratricopeptide repeat
      0.007   16.3   0.0     0.0082   16.1   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0084   15.8   0.1       0.21   11.3   0.0    2.0  2  PF04212.13 MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.022   15.1   0.1        4.4    7.8   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   4.9e-10   5.1e-07      18      42 .]       2      26 ..       1      26 [. 0.97
   2 !   31.9   0.0   6.8e-11   7.2e-08       1      26 [.      27      52 ..      27      53 .] 0.97

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.9e-10
   PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
                y+eA +l+e+a +i ++++G++HP+
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEILEKVHGPNHPH 26
                9***********************6 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 6.8e-11
   PF13374.1  1 taaalnnLAlalrargryeeAlalee 26
                +a+ lnnLA +lr++g+y+eA +l+e
  MMETSP0890-20130614|2034_1 27 VATMLNNLAGLLRDQGKYDEAKPLYE 52
                799**********************8 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.4e-18   3.6e-15      21      70 ..       2      52 ..       1      53 [] 0.96

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.4e-18
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleyle 70
                ydeA  lye+a+e+  +++g++hp +a+ lnnla l++ +g+ydeA++++e
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEIlEKVHGPNHPHVATMLNNLAGLLRDQGKYDEAKPLYE 52
                9*************88889******************************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00052      0.55      15      29 ..       2      16 ..       1      23 [. 0.77
   2 !   20.1   0.0   3.1e-07   0.00032       2      23 ..      31      52 ..      31      53 .] 0.96

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00052
   PF13176.1 15 yekAielyeraLalt 29
                y++A  lyera+++ 
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEIL 16
                899999999977554 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 3.1e-07
   PF13176.1  2 llnLarlysrlgdyekAielye 23
                l+nLa l +++g+y++A  lye
  MMETSP0890-20130614|2034_1 31 LNNLAGLLRDQGKYDEAKPLYE 52
                89*******************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   4.5e-05     0.047      17      30 ..       2      15 ..       1      18 [. 0.92
   2 !   18.6   0.1   8.8e-07   0.00092       3      25 ..      30      52 ..      28      53 .] 0.91

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.5e-05
                HHHHHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekALel 30
                ydeA   ye+A+e+
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEI 15
                9************9 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 8.8e-07
                HHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyye 25
                 l+nl+ +++ +gkydeA   ye
  MMETSP0890-20130614|2034_1 30 MLNNLAGLLRDQGKYDEAKPLYE 52
                69*****************9997 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   9.9e-10     1e-06      19      62 ..       2      52 ..       1      53 [] 0.82

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 9.9e-10
   PF13414.1 19 ydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledye 62
                ydeA  +ye+A+e+      pn++     ++nlA +++ +g +y+eA   ye
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEILekvhgPNHPHvatMLNNLAGLLRDQG-KYDEAKPLYE 52
                9************955666666544444*************.6****87775 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00047      0.49      17      30 ..       2      15 ..       1      18 [. 0.91
   2 !   16.8   0.0   3.9e-06    0.0041       3      25 ..      30      52 ..      28      53 .] 0.91

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00047
                HHHHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAlel 30
                y+eA  ++e+A+e+
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEI 15
                9***********98 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 3.9e-06
                HHHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafe 25
                 l+nl+ +++ +g+y+eA+ ++e
  MMETSP0890-20130614|2034_1 30 MLNNLAGLLRDQGKYDEAKPLYE 52
                589****************9998 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0049       5.2      17      30 ..       2      15 ..       1      19 [. 0.89
   2 !   13.7   0.1   3.3e-05     0.034       3      25 ..      30      52 ..      28      53 .] 0.89

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0049
                HHHHHHHHH---HH CS
   PF13181.1 17 ydkAkeylekalel 30
                yd+A+  +e+a+e+
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEI 15
                89999999999997 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3.3e-05
                -TTT---HHHHTT-HHHHHHHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeyle 25
                 ++nl+ ++r+ G+yd+Ak  +e
  MMETSP0890-20130614|2034_1 30 MLNNLAGLLRDQGKYDEAKPLYE 52
                5899***************8886 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.8e-07   0.00071      13      55 ..       2      52 ..       1      53 [] 0.85

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 6.8e-07
   PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallr 55
                ydeA +++e+a++          P+ a  l +la +l ++g++deA  l++
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEILekvhgpnhPHVATMLNNLAGLLRDQGKYDEAKPLYE 52
                7778888877777777888888************************87776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0018       1.9      17      41 ..       2      31 ..       1      34 [. 0.72
   2 !   10.5   0.0   0.00066       0.7       4      25 ..      31      52 ..      28      53 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0018
   PF13428.1 17 pdeAiallrrala.....laPddaealllL 41
                +deA+ l++ra++     ++P+++ + ++L
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEilekvHGPNHPHVATML 31
                678888888887755555788888777766 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00066
   PF13428.1  4 llalarallalGdpdeAiallr 25
                l  la +l+++G +deA  l++
  MMETSP0890-20130614|2034_1 31 LNNLAGLLRDQGKYDEAKPLYE 52
                5679**************9997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2     9e-06    0.0095       1      33 [.       8      48 ..       8      49 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9e-06
   PF13431.1  1 lyekalel.....dPnn...adaynnLAelllnnGdleeAe 33
                lye+a+e+      Pn+   a  +nnLA ll ++G+++eA+
  MMETSP0890-20130614|2034_1  8 LYERAIEIlekvhGPNHphvATMLNNLAGLLRDQGKYDEAK 48
                6999999965554266666699999**************97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.8e-06    0.0082      10      47 ..       7      50 ..       1      53 [] 0.54

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.8e-06
                HHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHH CS
   PF12895.2 10 flaekllaespk.....dp.edaylyalAlclylngeykrAyel 47
                 l+e++++   k      p  +++l +lA  l  +g+y++A  l
  MMETSP0890-20130614|2034_1  7 PLYERAIEILEKvhgpnHPhVATMLNNLAGLLRDQGKYDEAKPL 50
                55555555544444432233444555578888888888777555 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0002      0.21      21      38 ..       2      19 ..       1      34 [. 0.91
   2 ?    3.3   0.0     0.066        69      18      29 ..      41      52 ..      35      53 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0002
                HHHHHHHHHHHHHHHHHH CS
  PF04212.13 21 yeeAlelYkeAlelLlqa 38
                y+eA  lY+ A+e+L+++
  MMETSP0890-20130614|2034_1  2 YDEAMPLYERAIEILEKV 19
                99*************986 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.066
                TT-HHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYk 29
                +gky+eA  lY+
  MMETSP0890-20130614|2034_1 41 QGKYDEAKPLYE 52
                79******9996 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.021        23      13      26 ..       6      19 ..       1      20 [. 0.63
   2 ?    7.8   0.0    0.0042       4.4       7      24 ..      35      52 ..      33      53 .] 0.75

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.021
                HHHHHHHHHHHHHH CS
   PF13174.1 13 lgdtdeAlealerl 26
                +  +++A+e+le++
  MMETSP0890-20130614|2034_1  6 MPLYERAIEILEKV 19
                44577777777776 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0042
                HHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAleale 24
                a +++ +g++deA+ ++e
  MMETSP0890-20130614|2034_1 35 AGLLRDQGKYDEAKPLYE 52
                54556677******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.96
# Mc/sec: 132.30
//
Query:       MMETSP0890-20130614|2040_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-05   23.5   0.0    4.7e-05   23.5   0.0    1.1  1  PF13517.1  Family description
  ------ inclusion threshold ------
      0.059   13.0   1.7      0.084   12.5   1.2    1.4  1  PF01839.18 FG-GAP repeat
       0.46    9.8   2.9       0.66    9.3   2.0    1.2  1  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     1e-08   4.7e-05       1      25 [.       3      29 ..       3      55 .] 0.56

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1e-08
   PF13517.1  1 DldgDGdlDlvvag..dgglrlylnng 25
                D+dgDGd D++ a+  d+++ +y n  
  MMETSP0890-20130614|2040_1  3 DVDGDGDIDVLSASwdDDTIAWYENLM 29
                9************72245555555543 PP

>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   1.8e-05     0.084       9      27 ..       3      17 ..       1      30 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
                -TT---S-EEEEETEECTC CS
  PF01839.18  9 DfnGDGrpDlavGpmgggh 27
                D++GDG+ D++      ++
  MMETSP0890-20130614|2040_1  3 DVDGDGDIDVLS----ASW 17
                **********98....444 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.0   0.00014      0.66       7      17 ..       1      11 [.       1      12 [. 0.91

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00014
                HH--S----B- CS
   PF13202.1  7 afDlNgDGkIs 17
                a+D++gDG I+
  MMETSP0890-20130614|2040_1  1 AIDVDGDGDID 11
                79********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 227.24
//
Query:       MMETSP0890-20130614|2041_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.087   12.9   0.0       0.15   12.1   0.0    1.4  1  PF00536.25 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05      0.15       4      57 ..     117     169 ..     115     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
                 T-SSHHHHHHHTT-GGGHHHHHCT--SHHHHTT--HHHHHHH-------HHHHH CS
  PF00536.25   4 svedVgeWLesiglgqYvdnFrageidgdallllteedLeklgvtllGHrkkIl 57 
                 ++++++++L +ig+ +++  F +  i++d l+ l  +d+ ++++     ++kIl
  MMETSP0890-20130614|2041_1 117 TYSELANFLTDIGYMKHIQAFIEADINYDDLDVLAPSDFAEVKIGI-DVANKIL 169
                 67899****************99999************98877743.4455655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1389  (0.101594); expected 273.4 (0.02)
Passed bias filter:                      556  (0.0406671); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.44s 00:00:01.05 Elapsed: 00:00:00.71
# Mc/sec: 769.53
//
Query:       MMETSP0890-20130614|2042_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-15   55.5  27.3    9.5e-08   31.7   5.0    3.4  3  PF01554.13 MatE
    5.2e-05   21.7  18.0     0.0035   15.6   0.8    3.2  3  PF03023.9  MviN-like protein


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   5.0   1.4e-11   9.5e-08       1     160 [.      13     163 ..      13     165 .. 0.87
   2 ?    1.2   0.1     0.032   2.2e+02      13      44 ..     160     191 ..     157     206 .. 0.76
   3 !   30.6   6.1   2.9e-11     2e-07      15     152 ..     234     367 ..     219     368 .] 0.89

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.4e-11
  PF01554.13   1 Pialaqllqvlsslidtlvvgrl...gasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyllnipln 160
                 P++la  l  +++++dt +vgr+   +a+ laa++ia+s+l++++     + +a+++lv +   + + + a++++  ++++++l++v    +i + ++ ++ + +  +    +a  + r+ +l+ p+ + +++l+g+lrg gd++++l ++l+s+ ++n+ l+
  MMETSP0890-20130614|2042_1  13 PSLLALSLDPVLTMVDTGFVGRVaenSAEGLAAMGIASSVLNLVYPTTNFFTNAATPLVTK---SQDIKLAGRICTLALVFGILLGV----VIEISAPIVVTMAGGGP----AAIAFTRYRALSAPAVVSSNALNGCLRGFGDARAALDAALLSA-VINFTLD 163
                 8899999999**************9999*******************************98...46767777666665555555555....55555777777777777....7999***************************************.**99887 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.032
  PF01554.13  13 slidtlvvgrlgasalaavsialsilsfifip 44 
                 + +d+++v++lga+ +a  +++ +++  ++++
  MMETSP0890-20130614|2042_1 160 FTLDIFLVPQLGANGAAIATATAEFAGAALLL 191
                 67899************999999998776665 PP

  == domain 3    score: 30.6 bits;  conditional E-value: 2.9e-11
  PF01554.13  15 idtlvvgrlgasalaavsialsilsfifipllglgtalsilvgqalGagnperakvsvrvtvilsllisvviailillfredilslftedee.vlklaak.ylrililgipllslqlvlsgvlrgagdtkpplyinlisl 152
                  +t +v+  g++alaa  i  s+ s++ +   +l++a++ lv+ a         k+++ + + +++l+++++a+ ++l++e+++ l+ ++++ v++la++ + ril++ ++l s+ +v+ gvl+ga   ++ + ++l+s+
  MMETSP0890-20130614|2042_1 234 GTTRFVATAGPQALAANHILKSVYSLLSFATDALAVAAQRLVATATN------PKQVASRIFAWGTLLGLFFALSLYLTAEPLVLLLDYKDQlVISLAVDqIKRILAPLQILSSIVFVADGVLQGATAFRVEASAMLFSV 367
                 5789*******************************999999998754......456999**********************************77776651668************************999999999986 PP

>> PF03023.9  MviN-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.8   0.00051       3.5     122     184 ..      38     112 ..       5     131 .. 0.80
   2 !   15.6   0.8   5.2e-07    0.0035     350     400 ..     144     194 ..     141     240 .. 0.87
   3 !   10.9   0.9   1.4e-05     0.097      53     139 ..     282     367 ..     271     368 .] 0.83

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00051
   PF03023.9 122 naekkFfapafsPvllNivvIltllllanklgeeail............aLaigvliGgvlqllvqlpalrkagl 184
                 n+++   a++++ ++lN+v   t ++ ++ ++    +            aL +g+l+G+v+++ + ++  +  g 
  MMETSP0890-20130614|2042_1  38 NSAEGLAAMGIASSVLNLVYPTTNFFTNAATPLVTKSqdiklagrictlALVFGILLGVVIEISAPIVVTMAGGG 112
                 6666778999**********999999999988544448889998888777************9999988776555 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 5.2e-07
   PF03023.9 350 dtktPvkislislvlnillsllllpplgvvglalAtslsallnlvflyvll 400
                 d+++++ ++l+s+v+n  l+++l+p+lg++g a+At+ +  +++++l+ +l
  MMETSP0890-20130614|2042_1 144 DARAALDAALLSAVINFTLDIFLVPQLGANGAAIATATAEFAGAALLLKRL 194
                 78899999********************************99999987654 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 1.4e-05
   PF03023.9  53 aefvrkvstllilvlllvtllgilaapllirllapgfdeeklelavsll.rillpylllvslsavfgavLnaekkFfapafsPvllNi 139
                 ++++++++   +l+ l ++l   l a+ l+ ll+++  +   +lav+++ ril+p  +l s++ v+ +vL+ +  F + a s++l+++
  MMETSP0890-20130614|2042_1 282 KQVASRIFAWGTLLGLFFALSLYLTAEPLVLLLDYKD-QLVISLAVDQIkRILAPLQILSSIVFVADGVLQGATAFRVEA-SAMLFSV 367
                 6677788877777777777777999999*99999986.99******87637*************************9987.4566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.74
# Mc/sec: 1191.70
//
Query:       MMETSP0890-20130614|2049_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 158.06
//
Query:       MMETSP0890-20130614|2058_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 579.42
//
Query:       MMETSP0890-20130614|2056_1  [L=1089]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-13   50.8   0.0    2.4e-09   37.0   0.0    2.6  2  PF05193.16 Peptidase M16 inactive domain
    1.4e-05   24.7   0.0    3.4e-05   23.5   0.0    1.6  1  PF00675.15 Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.5e-13   2.4e-09       2     129 ..     226     360 ..     225     402 .. 0.80
   2 !   10.9   0.0   3.4e-05      0.24      82     161 ..     836     914 ..     824     932 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 3.5e-13
                 H-HHHHHHHHHHHCCGCCEEEEEEESS-HHHHHHHHHHHHCCSHHHH......GGG--S-SSEGGGSSEEEEEEECS.....SSSCEEEEEEEEEECGGCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEE CS
  PF05193.16   2 ltredlkdfykkhytpdnmvvvivGdvdheelvkliekyfgdlpaske...ppppkptgfplepselkkpevflkdl.....deeqahvalafpgppiesdpdsialkvlnelLgggassrLftelreksglaysv 129
                 lt e+++ +++++y+p n+ ++++G v+ +el+++  + + +  ++     +  + p++ +  ++    + ++++ +      ee+  + la++g ++ s +++++ + l  +L +ga s+L ++ + +sg + +v
  MMETSP0890-20130614|2056_1 226 LTNEQVRRYHQQFYRPQNLCLIVTGCVNAQELLSICHQALMTSAQHQIkeqVDLGRPWHTSTVSAWIPPQDRIVRVEfpaaqGEETGVAVLAWRGTNYGSYFEDAKQAMLWSYLTDGAASPLTRAFV-NSGDCSGV 360
                 799*********************************9888666655448994444455555555555555555555556666559*****************************************9.55544444 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 3.4e-05
                 EEEEEEEECGGCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEEEC--S..EEEEEEEEECESHHHH.HHHHHH CS
  PF05193.16  82 valafpgppiesdpdsialkvlnelLgggassrLftelreksglaysvsafldsysdsglfgisatadpekvek.avdvil 161
                 +a + pgp+i++ +  + l+v  e+L    ++ ++t++r   glay++s+  d  s +  fg++ +adp+k+   a dv+l
  MMETSP0890-20130614|2056_1 836 MARCAPGPAIDDVDALASLAVVIEYLTAL-EGDFWTKIR-GTGLAYGASLRTDAASSLVHFGLYRSADPGKALRaAADVVL 914
                 56688999995555556666666666665.999******.*************9999999********9955442445444 PP

>> PF00675.15  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.9e-09   3.4e-05      32     105 ..      88     164 ..      84     178 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.9e-09
                 --HHHHHHHTTSHBTSSHHCHHHHHHHCT--EE..EEEE-SSEEEEEEEEEGGG.HHHHHHHHHHHHHHBTTSHHHH CS
  PF00675.15  32 GlAHflehmlfkgTkkypsnkleeeleklGgsl..naytsrentvYyvevlsdd.lekaldrladvllnplfsesev 105
                 Gl H leh++f+g+k++p +++   l++  ++   na t+ ++t+Y+++   ++ + + l +  d +l+p++++  +
  MMETSP0890-20130614|2056_1  88 GLPHTLEHLIFLGSKNFPYKGVLDKLANRCLARgtNAWTDVDHTAYTATTAGSKgMLELLPIYIDHILQPTLTDAGF 164
                 999****************8888888888888789*************98877768888888889999999988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.43u 0.40s 00:00:01.83 Elapsed: 00:00:01.10
# Mc/sec: 2372.39
//
Query:       MMETSP0890-20130614|2064_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.39    9.7   4.3       0.69    8.9   0.1    2.4  2  PF05671.6  GETHR pentapeptide repeat (5 copies)
        1.1    8.7   3.9        2.2    7.7   1.6    2.2  2  PF01391.13 Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> PF05671.6  GETHR pentapeptide repeat (5 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.015     1e+02      10      15 ..      28      33 ..      26      39 .. 0.71
   2 ?    8.9   0.1    0.0001      0.69      13      20 ..      49      56 ..      48      62 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.015
   PF05671.6 10 RGETrR 15
                R ETrR
  MMETSP0890-20130614|2064_1 28 RRETRR 33
                446666 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0001
   PF05671.6 13 TrRGETHR 20
                T RGE HR
  MMETSP0890-20130614|2064_1 49 TNRGEAHR 56
                66777777 PP

>> PF01391.13  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.17   1.2e+03      31      34 ..      12      15 ..       4      19 .. 0.47
   2 ?    7.7   1.6   0.00033       2.2      16      46 ..      35      64 ..      30      66 .] 0.33

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.17
  PF01391.13 31 GpaG 34
                G+ G
  MMETSP0890-20130614|2064_1 12 GKLG 15
                1111 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00033
  PF01391.13 16 GkrGepGeaGekGekGpaGekGppGaaGkpG 46
                Gk Ge+G+a  k +  ++Ge+ ++G+ G++G
  MMETSP0890-20130614|2064_1 35 GKMGEAGAAV-KSKLTNRGEAHRQGKLGEAG 64
                3333333221.12222333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 222.76
//
Query:       MMETSP0890-20130614|2069_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 715.53
//
Query:       MMETSP0890-20130614|2070_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-85  285.3   0.0    4.5e-85  285.1   0.0    1.0  1  PF01116.15 Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> PF01116.15  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.1   0.0   3.3e-89   4.5e-85       3     285 ..      52     396 ..      50     398 .] 0.96

  Alignments for each domain:
  == domain 1    score: 285.1 bits;  conditional E-value: 3.3e-89
  PF01116.15   3 vslkellkkAkengyAvpafnvnnletinavleaaeekksPvIlqvsegaakya.................gaealaalveaaaekasvpvalhlDHgak.....ledlleaiea........gfsSvMiDgSelpleeNiaitkevverahalgvsvEaElGriggeedgveneee.kealyTdpeeaeefvertgvda.....lAvaiGnvHGvykpglepkldlellkeiqkavs.........dvpLvlHGgsgvpdeeiqeaiklGvvKiNidtdlqlaftkav.......rkylaeqpge...........ydprkllreaeeamkerveekievlgsag 285
                 + l +ll++A+ +g+A+pa+n +++  ina+leaa++ + P+I+q+s+g+ +++                 g  a a +v+++ae ++vpv+lh+DH+       +++llea e+        +fsS+M+D+Se  le+Nia++ e++er++++++++E+ElG++ggeedgv+n+++ +++lyT+pee++e++++++        +A+a+GnvHGvy+pg + kl+  +l++ qk +s         +v +v+HGgsg++ e+i+ ai++G +K+Nidtd+q++f++++       r+yl++q g+           ydpr  lr+aee   er+ +++e+l++ +
  MMETSP0890-20130614|2070_1  52 QALVDLLQYAQDKGFAIPAVNAVSSCGINACLEAAAKFQGPMIVQFSRGGGQFIagksvaggenqdsaavaGCVAGALHVRQLAELYGVPVILHTDHCMRdwlpwFDGLLEANEKyyalhgepLFSSHMLDLSEDTLEDNIATCVEYLERMSKIDLLLEMELGITGGEEDGVDNSDVdSSKLYTQPEEVYEVYKALNKVPngkftVAAAFGNVHGVYSPG-NVKLQPVILHNTQKFISeqngdgndkPVFFVFHGGSGSSREDIHYAIEAGTIKMNIDTDTQWSFWNGIreyeaknRDYLQTQIGNpdgpdkpnkkyYDPRMALRAAEECTVERLGQAMEDLKCVN 396
                 56789**********************************************************************************************9**************************************************************************99999*****************988788999**************5.5788888*********999*************************************************77777777777777777************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.77
# Mc/sec: 1238.64
//
Query:       MMETSP0890-20130614|2082_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-20   71.0   1.0    1.2e-11   43.8   0.0    2.0  2  PF00400.27 WD domain, G-beta repeat
    0.00027   20.4   0.1      0.065   12.8   0.0    2.7  3  PF07676.7  WD40-like Beta Propeller Repeat
      0.009   14.1   0.0       0.21    9.5   0.0    1.9  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.061   12.9   0.0      0.093   12.3   0.0    1.3  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1     1e-09   3.6e-06      15      39 .]       1      25 [.       1      25 [. 0.98
   2 !   43.8   0.0   3.5e-15   1.2e-11       3      39 .]      31      67 ..      29      67 .. 0.95

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1e-09
                EEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 15 tcvafspdgpllasgSrDgtirlWd 39
                +c++fs dg+++++gS D + ++Wd
  MMETSP0890-20130614|2082_1  1 NCCKFSKDGRRVVTGSGDEKAKIWD 25
                8***********************9 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 3.5e-15
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++ tl+gH+s+  ++afspdg++l+++S+Dgt r+W+
  MMETSP0890-20130614|2082_1 31 LLLTLSGHNSFAIACAFSPDGSRLITASYDGTARVWN 67
                5789********************************7 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.012        41      16      24 ..       5      13 ..       2      13 .. 0.87
   2 ?    4.0   0.0     0.011        36       2      16 ..      10      24 ..       9      26 .. 0.86
   3 !   12.8   0.0   1.9e-05     0.065      11      24 ..      42      55 ..      32      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.012
                E-----EEE CS
   PF07676.7 16 wSPDGkkiv 24
                +S+DG++ v
  MMETSP0890-20130614|2082_1  5 FSKDGRRVV 13
                9*****986 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
                EE--SSSS-EEEEEE CS
   PF07676.7  2 gqltnssgkngePaw 16
                ++++++sg++++  w
  MMETSP0890-20130614|2082_1 10 RRVVTGSGDEKAKIW 24
                79********99777 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 1.9e-05
                EEEEEE-----EEE CS
   PF07676.7 11 ngePawSPDGkkiv 24
                  + a+SPDG++++
  MMETSP0890-20130614|2082_1 42 AIACAFSPDGSRLI 55
                5789********97 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0     0.002       6.9     236     258 ..      14      36 ..       5      53 .. 0.73
   2 !    9.5   0.0   6.3e-05      0.21     216     250 ..      40      70 ..      33      71 .] 0.73

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.002
   PF11715.3 236 tlsrDgkLRvWnletgqclrttd 258
                 t s D k ++W+  tg++l t  
  MMETSP0890-20130614|2082_1  14 TGSGDEKAKIWDAVTGALLLTLS 36 
                 67889************966654 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 6.3e-05
   PF11715.3 216 saaasldvsssevegqtfvftlsrDgkLRvWnlet 250
                 s+a++ ++s+    + + ++t s Dg+ RvWn e+
  MMETSP0890-20130614|2082_1  40 SFAIACAFSP----DGSRLITASYDGTARVWNAEN 70 
                 4444555555....666677************987 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05     0.093     104     171 ..       1      67 [.       1      70 [. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.7e-05
   PF08662.6 104 NtifwspqgrlvllaGfgnlaGeleiydvkklkkiaka..easnatlvewspdgryvlTattsprlrvdn 171
                 N+ ++s+ gr v++ G g+   + +i+d  +   + +   ++s a  + +spdg  ++Ta+     rv n
  MMETSP0890-20130614|2082_1   1 NCCKFSKDGRRVVT-GSGDE--KAKIWDAVTGALLLTLsgHNSFAIACAFSPDGSRLITASYDGTARVWN 67 
                 77888888888775.44555..6789999966665554116777899*************9877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 233.07
//
Query:       MMETSP0890-20130614|2081_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.87
# Mc/sec: 729.92
//
Query:       MMETSP0890-20130614|2096_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   73.1   0.3    1.2e-20   73.0   0.2    1.0  1  PF13424.1  Tetratricopeptide repeat
    2.9e-20   71.3   0.7    1.2e-10   40.7   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
      2e-13   49.1   2.3    5.3e-06   25.6   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    3.2e-13   48.3   2.1    7.8e-06   25.3   0.2    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.3e-11   43.2   0.3      9e-05   21.8   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    3.1e-11   42.6   1.2    3.9e-05   23.0   0.1    2.0  2  PF13414.1  TPR repeat
    4.5e-10   38.4   1.8    0.00031   20.1   0.2    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.7e-09   37.3   0.5     0.0015   18.9   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    8.1e-08   32.6   1.3    2.1e-06   28.0   0.9    2.0  1  PF13432.1  Tetratricopeptide repeat
    1.2e-06   28.4   0.7      0.021   15.1   0.1    2.2  2  PF13174.1  Tetratricopeptide repeat
    9.2e-06   25.3   1.2      0.021   14.5   0.1    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00013   21.7   6.6      0.039   14.0   0.2    3.7  3  PF13431.1  Tetratricopeptide repeat
    0.00018   21.4   0.0       0.74   10.3   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
    0.00028   20.9   0.4     0.0038   17.3   0.0    2.0  2  PF07554.8  Uncharacterised Sugar-binding Domain
     0.0026   17.6   0.2        1.2    9.0   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat
     0.0097   15.9   0.1      0.039   13.9   0.1    1.9  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0097   16.4   0.3        1.9    9.1   0.0    2.2  2  PF08238.7  Sel1 repeat
  ------ inclusion threshold ------
       0.01   15.4   0.7       0.73    9.5   0.1    2.3  2  PF07720.7  Tetratricopeptide repeat
      0.025   13.4   0.0       0.32    9.7   0.0    1.9  1  PF04910.9  Transcriptional repressor TCF25
       0.03   14.2   0.4      0.083   12.8   0.3    1.6  1  PF14346.1  Domain of unknown function (DUF4398)
      0.035   13.2   0.1       0.74    9.0   0.0    2.2  2  PF10516.4  SHNi-TPR
      0.072   12.7   0.1        8.4    6.1   0.0    2.0  2  PF10975.3  Protein of unknown function (DUF2802)
      0.073   12.8   0.0       0.11   12.2   0.0    1.3  1  PF13371.1  Tetratricopeptide repeat
       0.12   11.6   0.6        1.2    8.3   0.5    2.0  2  PF12729.2  Four helix bundle sensory module for signal transduction


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.2   2.1e-23   1.2e-20      12      75 ..       1      65 [.       1      66 [] 0.97

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 2.1e-23
   PF13424.1 12 alvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
                a++lr +g+ydeA +lye+a+e+  +++g++hp++a+ ln+la l+  +g+ydeA++++e+A+ei
  MMETSP0890-20130614|2096_1  1 AGLLRNQGNYDEAKQLYERAIEIaEKVYGPNHPEVATDLNDLAGLLKDQGNYDEAKPLYERAIEI 65
                7899*******************99999***********************************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   2.1e-13   1.2e-10       9      42 .]       1      34 [.       1      34 [. 0.96
   2 !   29.7   0.0   6.5e-10   3.7e-07       1      31 [.      35      65 ..      35      66 .] 0.93

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.1e-13
   PF13374.1  9 AlalrargryeeAlaleeealairrrllGddHPd 42
                A +lr++g+y+eA +l+e+a +i ++++G++HP+
  MMETSP0890-20130614|2096_1  1 AGLLRNQGNYDEAKQLYERAIEIAEKVYGPNHPE 34
                679******************************6 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 6.5e-10
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealai 31
                +a+ ln+LA +l ++g+y+eA +l+e+a +i
  MMETSP0890-20130614|2096_1 35 VATDLNDLAGLLKDQGNYDEAKPLYERAIEI 65
                57779***********************987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.2   9.3e-09   5.3e-06      10      32 ..       3      25 ..       1      27 [. 0.91
   2 !   24.0   0.1     3e-08   1.7e-05       4      30 ..      39      65 ..      36      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 9.3e-09
                HHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23 10 aylklgkydeAleyyekALelnP 32
                +++++g+ydeA + ye+A+e+ +
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQLYERAIEIAE 25
                5789****************986 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 3e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+ l+ ++  +g+ydeA   ye+A+e+
  MMETSP0890-20130614|2096_1 39 LNDLAGLLKDQGNYDEAKPLYERAIEI 65
                67788999******************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.2   1.4e-08   7.8e-06      10      32 ..       3      25 ..       1      27 [. 0.91
   2 !   23.3   0.0     6e-08   3.4e-05       4      30 ..      39      65 ..      36      66 .] 0.91

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.4e-08
                HHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12 10 ayyklgdyeeAleafekAleldP 32
                +++++g+y+eA++++e+A+e++ 
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQLYERAIEIAE 25
                6899****************986 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 6e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                l+ l+ ++  +g+y+eA+ ++e+A+e+
  MMETSP0890-20130614|2096_1 39 LNDLAGLLKDQGNYDEAKPLYERAIEI 65
                7889999******************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.6e-07     9e-05       7      34 ..       2      29 ..       1      34 [. 0.83
   2 !   20.1   0.0   5.6e-07   0.00032       2      27 ..      39      64 ..      39      66 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.6e-07
   PF13176.1  7 rlysrlgdyekAielyeraLaltkdpld 34
                 l +++g+y++A +lyera+++++  ++
  MMETSP0890-20130614|2096_1  2 GLLRNQGNYDEAKQLYERAIEIAEKVYG 29
                68899*************9999866655 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 5.6e-07
   PF13176.1  2 llnLarlysrlgdyekAielyeraLa 27
                l+ La l  ++g+y++A  lyera++
  MMETSP0890-20130614|2096_1 39 LNDLAGLLKDQGNYDEAKPLYERAIE 64
                6789*******************665 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   6.9e-08   3.9e-05      12      38 ..       3      34 ..       1      36 [. 0.85
   2 !   19.8   0.0   6.9e-07   0.00039       2      32 ..      35      65 ..      34      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.9e-08
   PF13414.1 12 alfkegdydeAieayekAleld.....pnnae 38
                 l ++g+ydeA ++ye+A+e+      pn++e
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQLYERAIEIAekvygPNHPE 34
                5789****************966666699997 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 6.9e-07
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAlel 32
                +A  l+ l+  l  +g+ydeA  +ye+A+e+
  MMETSP0890-20130614|2096_1 35 VATDLNDLAGLLKDQGNYDEAKPLYERAIEI 65
                678899***********************98 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   5.5e-07   0.00031      10      32 ..       3      25 ..       1      27 [. 0.91
   2 !   18.2   0.1   2.2e-06    0.0013       7      30 ..      42      65 ..      36      66 .] 0.89

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.5e-07
                HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1 10 iYrqlGdydkAkeylekalelkp 32
                ++r+ G+yd+Ak+ +e+a+e++ 
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQLYERAIEIAE 25
                5799****************985 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.2e-06
                ---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  7 lGdiYrqlGdydkAkeylekalel 30
                l+ ++++ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|2096_1 42 LAGLLKDQGNYDEAKPLYERAIEI 65
                666899****************98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.6e-06    0.0015       8      32 ..       1      25 [.       1      40 [. 0.77
   2 !   17.5   0.0   6.8e-06    0.0039       4      29 ..      39      64 ..      36      66 .] 0.91

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.6e-06
   PF13428.1  8 arallalGdpdeAiallrralalaP 32
                a +l+++G++deA +l++ra++ a 
  MMETSP0890-20130614|2096_1  1 AGLLRNQGNYDEAKQLYERAIEIAE 25
                56899***************99653 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 6.8e-06
   PF13428.1  4 llalarallalGdpdeAiallrrala 29
                l +la +l ++G++deA  l++ra++
  MMETSP0890-20130614|2096_1 39 LNDLAGLLKDQGNYDEAKPLYERAIE 64
                568*********************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.9   3.8e-09   2.1e-06       5      58 ..       2      63 ..       1      65 [. 0.90

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.8e-09
   PF13432.1  5 rallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58
                 +l ++G+ydeA +++e+a++ a        Pe a  l  la +l ++g++deA  l+++a+
  MMETSP0890-20130614|2096_1  2 GLLRNQGNYDEAKQLYERAIEIAekvygpnhPEVATDLNDLAGLLKDQGNYDEAKPLYERAI 63
                6799*****************999****88888888899999999999*******9999997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.6e-05     0.021      10      28 ..       4      22 ..       1      24 [. 0.86
   2 !   12.0   0.0   0.00037      0.21       8      28 ..      45      64 ..      42      65 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.6e-05
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1 10 yyklgdtdeAlealerlik 28
                ++++g++deA++++er i+
  MMETSP0890-20130614|2096_1  4 LRNQGNYDEAKQLYERAIE 22
                56789***********997 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00037
                HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  8 lsyyklgdtdeAlealerlik 28
                l+ + +g++deA+ ++er i+
  MMETSP0890-20130614|2096_1 45 LL-KDQGNYDEAKPLYERAIE 64
                33.3477***********997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   3.8e-05     0.021      17      37 ..       6      26 ..       5      32 .. 0.89
   2 !   10.2   0.0   0.00085      0.49      18      34 ..      49      65 ..      42      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.8e-05
                HTT-HHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlq 37
                ++g+y+eA +lY+ A+e+ ++
  MMETSP0890-20130614|2096_1  6 NQGNYDEAKQLYERAIEIAEK 26
                58***************9665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00085
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +g+y+eA  lY+ A+e+
  MMETSP0890-20130614|2096_1 49 QGNYDEAKPLYERAIEI 65
                79*************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.016       9.2      22      34 .]       3      15 ..       1      15 [. 0.90
   2 !   14.0   0.2   6.8e-05     0.039       1      33 [.      16      56 ..      16      57 .. 0.86
   3 ?    2.7   0.0      0.29   1.6e+02       1       8 [.      58      65 ..      58      66 .] 0.89

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.016
   PF13431.1 22 lllnnGdleeAeq 34
                ll n+G+++eA+q
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQ 15
                689********98 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 6.8e-05
   PF13431.1  1 lyekaleld.....Pnnadayn...nLAelllnnGdleeAe 33
                lye+a+e++     Pn++++ +    LA ll+++G+++eA+
  MMETSP0890-20130614|2096_1 16 LYERAIEIAekvygPNHPEVATdlnDLAGLLKDQGNYDEAK 56
                79******88888899977777666**************97 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.29
   PF13431.1  1 lyekalel 8 
                lye+a+e+
  MMETSP0890-20130614|2096_1 58 LYERAIEI 65
                7*****97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0023       1.3      10      26 .]       3      19 ..       1      19 [. 0.88
   2 !   10.3   0.0    0.0013      0.74       6      26 .]      41      61 ..      39      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0023
                HHHH-------HHHHHT CS
   PF07721.9 10 allalGdldeAraller 26
                +l  +G++deA +l er
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQLYER 19
                6889**********997 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0013
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                +LA +l ++G++deA  l er
  MMETSP0890-20130614|2096_1 41 DLAGLLKDQGNYDEAKPLYER 61
                6899999********999987 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.6e-06    0.0038      12      41 ..       9      34 ..       3      42 .. 0.80
   2 ?    2.4   0.0       0.3   1.7e+02       7      29 ..      46      64 ..      39      65 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.6e-06
                HHHTC-HHHHHHHHHHHHHHHHHH...TST CS
   PF07554.8 12 nysnadtekknaynnAitaAkaiLnntngp 41
                ny    +e+k++y+ Ai++A+++  ++  +
  MMETSP0890-20130614|2096_1  9 NY----DEAKQLYERAIEIAEKVYGPNHPE 34
                55....9*****************886633 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.3
                CCCCHHHHTC-HHHHHHHHHHHH CS
   PF07554.8  7 lkassnysnadtekknaynnAit 29
                lk+  ny    +e+k +y+ Ai+
  MMETSP0890-20130614|2096_1 46 LKDQGNY----DEAKPLYERAIE 64
                5565666....777777777765 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0076       4.4      11      29 ..       4      22 ..       1      29 [. 0.67
   2 !    9.0   0.0    0.0021       1.2       7      29 ..      42      64 ..      36      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0076
   PF12688.2 11 rDstGeeakAvplYrrAla 29
                    G+ ++A +lY+rA++
  MMETSP0890-20130614|2096_1  4 LRNQGNYDEAKQLYERAIE 22
                4456777777777777765 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0021
   PF12688.2  7 ragarDstGeeakAvplYrrAla 29
                 ag     G+ ++A plY+rA++
  MMETSP0890-20130614|2096_1 42 LAGLLKDQGNYDEAKPLYERAIE 64
                68888889*************86 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.8e-05     0.039       2      49 ..       7      60 ..       6      66 .] 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.8e-05
                TT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHH CS
   PF12895.2  2 qhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellr 49
                q+ny++A  l+e++++ + k      p  ++ l  lA  l  +g+y++A  l++
  MMETSP0890-20130614|2096_1  7 QGNYDEAKQLYERAIEIAEKvygpnHPeVATDLNDLAGLLKDQGNYDEAKPLYE 60
                677777777777777777777766423344455557999999999999987775 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0034       1.9      23      35 ..       9      21 ..       1      23 [. 0.77
   2 ?    5.7   0.0     0.039        22      22      35 ..      49      63 ..      39      64 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0034
   PF08238.7 23 dpekAleWyekAA 35
                ++++A ++ye+A 
  MMETSP0890-20130614|2096_1  9 NYDEAKQLYERAI 21
                8***********6 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.039
   PF08238.7 22 k.dpekAleWyekAA 35
                + ++++A  +ye+A 
  MMETSP0890-20130614|2096_1 49 QgNYDEAKPLYERAI 63
                23799********96 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0013      0.73      13      29 ..       6      20 ..       5      27 .. 0.80
   2 ?    4.7   0.0     0.042        24      13      26 ..      48      59 ..      41      65 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0013
                HTT-HHHHHHH..HHHH CS
   PF07720.7 13 nkkkyqeArelfsYall 29
                n+++y+eA +l  Y+ +
  MMETSP0890-20130614|2096_1  6 NQGNYDEAKQL--YERA 20
                89*********..7755 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.042
                HTT-HHHHHHH..H CS
   PF07720.7 13 nkkkyqeArelfsY 26
                ++++y+eA  l  Y
  MMETSP0890-20130614|2096_1 48 DQGNYDEAKPL--Y 59
                59******877..5 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00057      0.32      49      84 ..       3      38 ..       1      59 [. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00057
   PF04910.9 49 vyreqgdfevAndlieraLfilervfhpsFspllln 84
                ++r+qg++ +A +l era+ i e+v  p+  ++  +
  MMETSP0890-20130614|2096_1  3 LLRNQGNYDEAKQLYERAIEIAEKVYGPNHPEVATD 38
                6799********************999987765555 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   0.00015     0.083      18      72 ..       9      63 ..       5      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00015
   PF14346.1 18 eleeAeaalerAeaagaekyapveLeeAkekLaaAkaalaegkyeeArrlaeqAe 72
                 ++eA++ +erA +   + y p++ e A++  + A  + ++g+y+eA+ l e+A+
  MMETSP0890-20130614|2096_1  9 NYDEAKQLYERAIEIAEKVYGPNHPEVATDLNDLAGLLKDQGNYDEAKPLYERAI 63
                689999999999998888899***************************9999996 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0013      0.74      14      37 ..       7      30 ..       5      31 .. 0.91
   2 ?    2.2   0.0      0.17        95      14      30 ..      49      65 ..      46      66 .] 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0013
   PF10516.4 14 nEnFpqAveDlrkaLeLreqllpp 37
                ++n+++A + +++a+e+ e+++ p
  MMETSP0890-20130614|2096_1  7 QGNYDEAKQLYERAIEIAEKVYGP 30
                68*****************99976 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.17
   PF10516.4 14 nEnFpqAveDlrkaLeL 30
                ++n+++A   +++a+e+
  MMETSP0890-20130614|2096_1 49 QGNYDEAKPLYERAIEI 65
                579***99999999887 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.015       8.4      26      43 ..       9      26 ..       3      32 .. 0.85
   2 ?    5.4   0.0     0.024        13       9      39 ..      34      64 ..      27      66 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.015
   PF10975.3 26 qqdpesrlYsrAaklvel 43
                + d++++lY+rA++++e+
  MMETSP0890-20130614|2096_1  9 NYDEAKQLYERAIEIAEK 26
                5688999*******9986 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.024
   PF10975.3  9 eleqklkqleerleeleqqdpesrlYsrAak 39
                e++  l++l+  l+   + d++++lY+rA++
  MMETSP0890-20130614|2096_1 34 EVATDLNDLAGLLKDQGNYDEAKPLYERAIE 64
                6777888888889999999**********97 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00019      0.11       5      57 ..       4      64 ..       1      66 [] 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00019
   PF13371.1  5 ylreedferALavverllll........aPddpyerRDrGlllaqlgclaaAaedLeafle 57
                + +++ +++A + +er +++        +P+ + ++ D + ll  +g++ +A   +e+++e
  MMETSP0890-20130614|2096_1  4 LRNQGNYDEAKQLYERAIEIaekvygpnHPEVATDLNDLAGLLKDQGNYDEAKPLYERAIE 64
                6788999999999999999999999999999**********************99999886 PP

>> PF12729.2  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.5    0.0021       1.2     133     154 ..       6      26 ..       3      56 .. 0.71
   2 ?    2.1   0.0      0.17        97     133     147 ..      48      62 ..      45      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0021
   PF12729.2 133 kegkkdeAyelyetelkparek 154
                 ++g++deA++lye  ++ ++ek
  MMETSP0890-20130614|2096_1   6 NQGNYDEAKQLYERAIE-IAEK 26 
                 79**********99985.3333 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.17
   PF12729.2 133 kegkkdeAyelyete 147
                 ++g++deA+ lye  
  MMETSP0890-20130614|2096_1  48 DQGNYDEAKPLYERA 62 
                 79********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 229.22
//
Query:       MMETSP0890-20130614|2093_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   12.3   1.7      0.087   12.0   1.2    1.3  1  PF03357.16 Snf7


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   6.4e-06     0.087      93     122 ..      81     110 ..      33     112 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.4e-06
  PF03357.16  93 amkamnkkmdidkidklmdeiedqmekade 122
                  mk+++k++ i++ d++++ei++ ++  ++
  MMETSP0890-20130614|2093_1  81 LMKNVRKQIEINEYDRIQQEIQEDVDIGNI 110
                 6***********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.59
# Mc/sec: 511.76
//
Query:       MMETSP0890-20130614|2098_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-50  168.4   1.6    1.2e-49  167.9   1.1    1.2  1  PF08719.6 Domain of unknown function (DUF1768)
  ------ inclusion threshold ------
      0.024   14.6   0.3       0.84    9.6   0.1    2.2  2  PF03722.9 Hemocyanin, all-alpha domain


Domain annotation for each model (and alignments):
>> PF08719.6  Domain of unknown function (DUF1768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.9   1.1   1.7e-53   1.2e-49       1     156 [.      20     174 ..      20     175 .. 0.96

  Alignments for each domain:
  == domain 1    score: 167.9 bits;  conditional E-value: 1.7e-53
   PF08719.6   1 iyFyraeeeygilSnlypspftvd..gvkfptaehymqaqKallfedeeaaakilaaespkeakklgrkvpnfdearkdWekvkeevvvegllakfeqneelrelLlsTgdrelveaspsDrvWGiglnaesaildeenwrGkNlLGkalmevReelr 156
                 iyFyr+e+eyg+lS++y+ ++  +  g++f++ e+ym+++Ka+lf+de++a++il+a++p ++ + gr+v+nf+e++  W +++ ++v eg++ kf+q ++l++ L++Tg+++lveasp+D+ WGig++   a++d ++wrG NlLGkal++vR++l+
  MMETSP0890-20130614|2098_1  20 IYFYRPEDEYGYLSQWYQEDIFSNeeGIQFSCCEQYMMWKKAKLFSDEKMAKQILQATKPYDMLRFGRQVSNFNEKQ--WVNNRLKIVEEGNWLKFSQSKKLARALMETGEKRLVEASPKDSTWGIGIS-VAAAKDGTQWRGLNLLGKALENVRARLK 174
                 8*******************977634799************************************************..**************************************************.5557999******************985 PP

>> PF03722.9  Hemocyanin, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00012      0.84      30      74 ..      53      97 ..      34     124 .. 0.92
   2 ?    2.9   0.0     0.015     1e+02      44      66 ..     263     286 ..     241     291 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00012
   PF03722.9 30 ksfdieaniekykdkklvkeflellkeggllpkgeiFslfnerhl 74
                +++ ++++++ ++d+k++k++l++ k   +l  g   s fne+++
  MMETSP0890-20130614|2098_1 53 EQYMMWKKAKLFSDEKMAKQILQATKPYDMLRFGRQVSNFNEKQW 97
                5677889999*********************************97 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.015
   PF03722.9  44 kkl.vkeflellkeggllpkgeiF 66 
                 k+   +e +++++  gllp++ iF
  MMETSP0890-20130614|2098_1 263 KTSeKDETMNFYQATGLLPRNVIF 286
                 33324679***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.43s 00:00:01.12 Elapsed: 00:00:00.76
# Mc/sec: 1217.10
//
Query:       MMETSP0890-20130614|2108_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      134  (0.00980105); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 254.61
//
Query:       MMETSP0890-20130614|2110_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.7   9.0       0.72    9.6   1.0    2.1  2  PF14270.1  Domain of unknown function (DUF4358)
       0.57    9.9   5.8        1.2    8.8   0.2    2.2  2  PF02627.15 Carboxymuconolactone decarboxylase family
        1.6    9.1   7.0        6.6    7.1   0.9    2.2  2  PF05363.7  Herpesvirus US12 family
          2    8.3   5.6        3.9    7.4   0.5    2.1  2  PF10397.4  Adenylosuccinate lyase C-terminus
        4.5    6.7   7.8        5.2    6.5   5.4    1.1  1  PF02669.10 K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> PF14270.1  Domain of unknown function (DUF4358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0   0.00026      0.72      49      95 ..       5      51 ..       1      55 [. 0.92
   2 ?    8.9   0.8   0.00045       1.2      28      72 ..      71     115 ..      69     116 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
   PF14270.1 49 avvkakdgkqaeeVkkalekrlesqkqsfedylpeeyellenavvee 95
                a++ka  ++ + +++k le+r + q++  +   pee++ l na+++ 
  MMETSP0890-20130614|2110_1  5 AAIKAEAASIVAAARKDLEERTKAQEAAKNAKTPEELQALINARLKS 51
                789999999999****************99999*********99985 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00045
   PF14270.1  28 addveefviyssasnvkaeeiavvkakdgkqaeeVkkalekrles 72 
                 +d+ e+ ++  +a + ++e ia+ ka ++++ ee+++++++rl s
  MMETSP0890-20130614|2110_1  71 KDKAEAAAVVATAQRERNERIAAQKAVKNASPEEIQQMINARLSS 115
                 578888888889999999************9**********9976 PP

>> PF02627.15  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   0.00045       1.2      33      66 ..      15      47 ..       8      55 .. 0.84
   2 ?    3.8   0.6     0.017        46      22      66 ..      69     111 ..      65     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00045
                HHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHH CS
  PF02627.15 33 vsaangceyCvdaHtraalkaGvteeeiaealaq 66
                v+aa++    ++  +++a k+ +t+ee+++++  
  MMETSP0890-20130614|2110_1 15 VAAARKDLE-ERTKAQEAAKNAKTPEELQALINA 47
                566666666.8999***************99975 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.017
                 -HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHH CS
  PF02627.15  22 drkereLialavsaangceyCvdaHtraalkaGvteeeiaealaq 66 
                 ++k++  +a +v++a++    ++  +++a+k+ +++eei++++  
  MMETSP0890-20130614|2110_1  69 SAKDKAEAAAVVATAQRERN-ERIAAQKAVKN-ASPEEIQQMINA 111
                 56777778888888888888.99999998887.899999988765 PP

>> PF05363.7  Herpesvirus US12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.9    0.0024       6.6      28      68 ..      21      60 ..       8      81 .. 0.80
   2 ?    5.3   0.6    0.0093        25      30      46 ..      83      99 ..      68     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0024
   PF05363.7 28 einkreredreaartavtdPelPllrsPdllseiasrnptq 68
                +++ r +  +eaa+ a t  el  l +  l+s +a r p+ 
  MMETSP0890-20130614|2110_1 21 DLEERTK-AQEAAKNAKTPEELQALINARLKSSMAGRAPAP 60
                4555544.579**************************9975 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0093
   PF05363.7 30 nkreredreaartavtd 46
                 +rer++r aa+ av++
  MMETSP0890-20130614|2110_1 83 AQRERNERIAAQKAVKN 99
                68*************86 PP

>> PF10397.4  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.5    0.0014       3.9      29      66 ..      10      47 ..       4      57 .. 0.87
   2 ?    3.7   0.2     0.021        56      30      66 ..      76     111 ..      65     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
   PF10397.4 29 eaamkaweegkdlrellladpevakylseeeldalfdp 66
                eaa  +++ +kdl e+ +a++  ++  ++eel+al ++
  MMETSP0890-20130614|2110_1 10 EAASIVAAARKDLEERTKAQEAAKNAKTPEELQALINA 47
                56666777899***********************9986 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.021
   PF10397.4  30 aamkaweegkdlrellladpevakylseeeldalfdp 66 
                 aa  +++ ++   e+++a++ v+ + s+ee++++ ++
  MMETSP0890-20130614|2110_1  76 AAAVVATAQRERNERIAAQKAVK-NASPEEIQQMINA 111
                 55555556777789999999998.9999***998875 PP

>> PF02669.10  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.4    0.0019       5.2      72     161 ..      19     111 ..       8     116 .] 0.72

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0019
  PF02669.10  72 iaeseydaaasggsnlapsnpellkaiaarvealrkenldaavsvpvdlvtasgsGldpaisp..aaaklqiprva..ka.rnisveqlerliek 161
                   + e  ++a  ++  a + +el+++i+ar+++  +   +a     v    +s+    +a ++  +a + + +r+a  ka +n s+e+++++i+ 
  MMETSP0890-20130614|2110_1  19 RKDLEERTKAQEAAKNAKTPEELQALINARLKSSMAGRAPAPSP--VPSRESSAKDKAEAAAVvaTAQRERNERIAaqKAvKNASPEEIQQMINA 111
                 4566788999999999****************999999665555..555566665554444440044455678998332237889*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1245  (0.091062); expected 273.4 (0.02)
Passed bias filter:                      614  (0.0449093); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 330.93
//
Query:       MMETSP0890-20130614|2112_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 247.01
//
Query:       MMETSP0890-20130614|2109_1  [L=1061]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-17   62.2  20.7       0.14   12.6   0.0   12.0 12  PF13637.1  Ankyrin repeats (many copies)
    2.2e-15   56.6  28.9     0.0029   17.8   1.0   10.0 10  PF12796.2  Ankyrin repeats (3 copies)
    7.4e-14   50.6  23.3       0.29   10.9   0.0   13.0 13  PF00023.25 Ankyrin repeat
    1.2e-10   41.1  30.7       0.14   12.2   0.0   12.3 14  PF13857.1  Ankyrin repeats (many copies)
    7.6e-10   37.9  31.5        7.4    7.0   0.0   14.7 16  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.34   10.9   0.0    1.8  1  PF12019.3  Type II transport protein GspH


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.7e-05       0.2       9      53 ..       4      52 ..       2      53 .. 0.80
   2 ?    2.2   0.0      0.11   2.5e+02      34      50 ..      68      84 ..      55      85 .. 0.84
   3 ?   -0.4   0.0      0.72   1.7e+03      35      50 ..     192     210 ..     152     214 .. 0.68
   4 !   12.6   0.0     6e-05      0.14       1      43 [.     224     271 ..     224     277 .. 0.84
   5 ?   -0.4   0.0      0.72   1.6e+03      32      53 ..     342     363 ..     314     363 .. 0.67
   6 !    7.5   0.0    0.0023       5.2      16      50 ..     359     393 ..     341     394 .. 0.80
   7 !    8.4   0.1    0.0013       2.9      13      47 ..     397     432 ..     390     443 .. 0.78
   8 !   11.5   0.1   0.00014      0.31      22      43 ..     599     620 ..     574     621 .. 0.64
   9 !    6.6   0.0    0.0046        10      16      44 ..     638     666 ..     631     672 .. 0.77
  10 ?    0.9   0.0      0.28   6.4e+02      31      46 ..     711     726 ..     694     731 .. 0.77
  11 ?   -0.9   0.0       1.1   2.4e+03      16      40 ..     788     814 ..     785     817 .. 0.73
  12 ?    0.9   0.0      0.28   6.3e+02      11      39 ..     869     898 ..     847     900 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.7e-05
   PF13637.1  9 aisgrlelvklLlekgid.inrtdesGntaLhiAalrg...nieilklL 53
                a++ ++ +++ L++  +d i ++d++ +t+Lh+ a+++    + +l+ L
  MMETSP0890-20130614|2109_1  4 AQKRCINALRRLVQAYPDgILCKDAYDWTPLHLFAQFQldpTVAALEIL 52
                56677888999998888899999*************9974446666666 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.11
   PF13637.1 34 GntaLhiAalrgnieil 50
                 +t+ h+A+++++ +i+
  MMETSP0890-20130614|2109_1 68 RDTPAHLACYANRRRIA 84
                58*********998876 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.72
   PF13637.1  35 ntaLhiAa...lrgnieil 50 
                 nt+Lh+ +   ++++ +il
  MMETSP0890-20130614|2109_1 192 NTPLHKIClstETQHHQIL 210
                 8999998855544466555 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 6e-05
   PF13637.1   1 gltaLhyaai....sgrlel...vklLlekgidinrt.desGntaLhiAal 43 
                 g+t+Lh a+i    +   ++   +++Ll+  ++  ++  ++ + ++h+A+ 
  MMETSP0890-20130614|2109_1 224 GRTPLHAACIlaaqQ---QVserIAWLLQAEPNAAALpTNDDEYPVHLACA 271
                 69********96533...44446******999999998899********97 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.72
   PF13637.1  32 esGntaLhiAalrgnieilklL 53 
                 ++++  Lh+++ +   ++lk L
  MMETSP0890-20130614|2109_1 342 KNNELVLHLVCANHSSWVLKAL 363
                 5667789999999999999987 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.0023
   PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalrgnieil 50 
                 ++k L ++  + + +d+ Gn+aLh+ a+ ++++ +
  MMETSP0890-20130614|2109_1 359 VLKALKARPSEAYEVDSAGNSALHLFAQQQRLHQV 393
                 56667777788999************998887765 PP

  == domain 7    score: 8.4 bits;  conditional E-value: 0.0013
   PF13637.1  13 rlelvklLlekgidinrt.desGntaLhiAalrgni 47 
                  l+++  Ll+ + d  ++ ++ G t+Lh+ +l++ +
  MMETSP0890-20130614|2109_1 397 ALDTLYALLKANEDAIMLqNKAGYTPLHLLCLHQKP 432
                 5778888888888877778************99864 PP

  == domain 8    score: 11.5 bits;  conditional E-value: 0.00014
   PF13637.1  22 ekgidinrtdesGntaLhiAal 43 
                 ++ + +n++d++G t+Lh+A++
  MMETSP0890-20130614|2109_1 599 NQAKFLNCVDKNGSTPLHLACQ 620
                 334459***************8 PP

  == domain 9    score: 6.6 bits;  conditional E-value: 0.0046
   PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalr 44 
                 +++ L+e   ++  ++  G+t+Lh+ +++
  MMETSP0890-20130614|2109_1 638 ILEELIELSDSLLIQNTGGWTPLHLFVQK 666
                 556666655567889**********9975 PP

  == domain 10    score: 0.9 bits;  conditional E-value: 0.28
   PF13637.1  31 desGntaLhiAalrgn 46 
                  + G+t Lh+++ + +
  MMETSP0890-20130614|2109_1 711 TNGGDTVLHLVCHACR 726
                 46699****9997765 PP

  == domain 11    score: -0.9 bits;  conditional E-value: 1.1
   PF13637.1  16 lvklLlekgidinrt..desGntaLhi 40 
                 +++lLle+ +       ++sG+ aLh 
  MMETSP0890-20130614|2109_1 788 CLELLLEQHAPGASHslPGSGEMALHQ 814
                 678888877663333369*******95 PP

  == domain 12    score: 0.9 bits;  conditional E-value: 0.28
   PF13637.1  11 sgrlelvklLlekgidinrt.desGntaLh 39 
                 ++  +l++ Ll+  ++  +  d++Gnt+ +
  MMETSP0890-20130614|2109_1 869 KSAPQLIQCLLSAAPNAAHNrDSNGNTPSQ 898
                 5556677777877777666679*****987 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0035         8      34      75 ..       4      46 ..       2      62 .. 0.77
   2 !    5.4   0.0    0.0088        20      28      76 ..      32      85 ..      25      97 .. 0.64
   3 ?    5.0   0.1     0.012        26      12      68 ..      48     161 ..      43     192 .. 0.59
   4 !   17.8   1.0   1.3e-06    0.0029      12      84 ..     175     253 ..     149     258 .. 0.67
   5 !   10.8   0.2   0.00018      0.41      26      74 ..     224     277 ..     218     291 .. 0.64
   6 !    6.8   0.5    0.0033       7.6       4      79 ..     235     364 ..     234     371 .. 0.73
   7 !   12.9   2.4   4.1e-05     0.093       1      71 [.     348     431 ..     314     453 .. 0.79
   8 !   11.6   0.1   0.00011      0.24      26      69 ..     574     621 ..     435     644 .. 0.79
   9 !   16.1   0.0   4.2e-06    0.0096      21      70 ..     607     667 ..     597     672 .. 0.72
  10 ?    0.8   2.0      0.24   5.5e+02      26      62 ..     847     896 ..     688     922 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0035
   PF12796.2 34 aeagnleivklLleagad.vnakdkegntpLhlAvrnghlelv 75
                a++ ++++++ L++a  d + +kd++ +tpLhl ++++  ++v
  MMETSP0890-20130614|2109_1  4 AQKRCINALRRLVQAYPDgILCKDAYDWTPLHLFAQFQLDPTV 46
                677889999999999887578899*********9997655554 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0088
   PF12796.2 28 tpLhlAaeagn...leivklLleagadvnakd..kegntpLhlAvrnghlelvk 76
                tpLhl a+ +    ++++++Ll+   +v a +   +  tp hlA+ +++  +++
  MMETSP0890-20130614|2109_1 32 TPLHLFAQFQLdptVAALEILLAGHTNVVAWTtcVDRDTPAHLACYANRRRIAE 85
                566666655543335666666665555533334567778888888777776665 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.012
   PF12796.2  12 lvklLle.kgadvdl.....getpLhlAaeagnl...........................................eivklLle...agadvnakd.....kegntpLhlAvr 68 
                 ++++Ll+ + + v +     ++tp hlA+ a++                                             ++ +Lle     adv+a +     k++ t Lhl ++
  MMETSP0890-20130614|2109_1  48 ALEILLAgHTNVVAWttcvdRDTPAHLACYANRRriaessialfatlaqfapeaavsscrehrnswdhlprkdlrysRACAALLEpwlISADVQALSswrdkKNNATLLHLLCS 161
                 566666634433333667777888888888888844444444444444444444444444444444444444444444444444466644555444455555666677777665 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 1.3e-06
   PF12796.2  12 lvklLlekg.advdl.getpLhlAa...eagnleivklLleagadvnakdkegntpLhlA....vrnghlelvklLlekgad 84 
                 +v  Ll+++  + d   +tpLh  +   e ++++i+  Ll+       kd++g+tpLh+A    ++++  e + +Ll+++ +
  MMETSP0890-20130614|2109_1 175 VVSELLDSQeFTTDKhLNTPLHKIClstETQHHQILFKLLKP---HLLKDAHGRTPLHAAcilaAQQQVSERIAWLLQAEPN 253
                 4666666442333336788***66523377788888777774...5567779*******73332557778999999998665 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00018
   PF12796.2  26 getpLh....lAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlel 74 
                 g+tpLh    lAa+++  e + +Ll+a+ +  a   ++ ++p hlA+  ++ e+
  MMETSP0890-20130614|2109_1 224 GRTPLHaaciLAAQQQVSERIAWLLQAEPNAAALPtNDDEYPVHLACAGCSDEI 277
                 677777222233466666777777776555433336777788888877766665 PP

  == domain 6    score: 6.8 bits;  conditional E-value: 0.0033
   PF12796.2   4 AaengnlelvklLlekgadvdl.....getpLhlAaeagnl...........................................eivklLle......agadvnakdkegntpLhlAvrnghlelvklLl 79 
                 Aa++   e + +Ll+++ +         e p+hlA++  +                                            e+++lLl        ++++   +k+++ +Lhl + n++  ++k L 
  MMETSP0890-20130614|2109_1 235 AAQQQVSERIAWLLQAEPNAAAlptndDEYPVHLACAGCSDeikpelilvlkqlaqsapsvaanrdglgkfawdylprhderyeECLQLLLGqllvgiEEKSLTKSHKNNELVLHLVCANHSSWVLKALK 364
                 5555555666677776655554554434559998885444455777777777777888888888888888888888888888889999999999988878888888899999999999999999999885 PP

  == domain 7    score: 12.9 bits;  conditional E-value: 4.1e-05
   PF12796.2   1 LhlAaengnlelvklLlekg...advdl.getpLhlAaeagnl........eivklLleagad.vnakdkegntpLhlAvrngh 71 
                 Lhl++ n +  ++k L +      +vd  g+++Lhl a++++l        +++ +Ll+a+ d +  ++k g+tpLhl + +++
  MMETSP0890-20130614|2109_1 348 LHLVCANHSSWVLKALKARPseaYEVDSaGNSALHLFAQQQRLhqvneealDTLYALLKANEDaIMLQNKAGYTPLHLLCLHQK 431
                 78888888888888888744222355558999******99998777776666666688877762455569*******9988665 PP

  == domain 8    score: 11.6 bits;  conditional E-value: 0.00011
   PF12796.2  26 getpLhlAaeagnleivklLle...agad.vnakdkegntpLhlAvrn 69 
                  +t+Lh+ +++    i +l l    ++a  +n+ dk+g tpLhlA+++
  MMETSP0890-20130614|2109_1 574 YSTALHILCSRAGRRIRSLWLPslqNQAKfLNCVDKNGSTPLHLACQY 621
                 45577776666666666664444445554269999**********983 PP

  == domain 9    score: 16.1 bits;  conditional E-value: 4.2e-06
   PF12796.2  21 advdlgetpLhlAa............eagnleivklLleagadvnakdkegntpLhlAvrng 70 
                  d + g+tpLhlA+                ++i++ L+e   ++  ++  g+tpLhl v+++
  MMETSP0890-20130614|2109_1 607 VDKN-GSTPLHLACqyfvlvvdnddaVEHEFKILEELIELSDSLLIQNTGGWTPLHLFVQKH 667
                 2333.999*****844444444443244445************999999********99876 PP

  == domain 10    score: 0.8 bits;  conditional E-value: 0.24
   PF12796.2  26 getpLhlAa.....eagnl..........eivklLleagadv.nakdkegntp 62 
                   tpLhl +     +              + +++Ll+a  +   ++d +gntp
  MMETSP0890-20130614|2109_1 847 AATPLHLLCsalinS---ElspaqtksapQLIQCLLSAAPNAaHNRDSNGNTP 896
                 334555332222220...12333333333566666664333212223666666 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0093        21       2      18 ..      30      60 ..      29      62 .. 0.76
   2 ?    3.5   0.0     0.027        63       3      18 ..      69      84 ..      67      89 .. 0.86
   3 ?   -0.9   0.0      0.66   1.5e+03       3      23 ..     153     181 ..     151     183 .. 0.70
   4 ?   -0.7   0.1       0.6   1.4e+03       3      11 ..     192     200 ..     190     215 .. 0.75
   5 !    8.7   0.0   0.00061       1.4       1      22 [.     223     248 ..     223     256 .. 0.69
   6 ?    0.0   0.0      0.35   7.9e+02       3      14 ..     263     281 ..     261     327 .. 0.52
   7 ?    2.3   0.0     0.063   1.4e+02       2      13 ..     377     388 ..     376     412 .. 0.72
   8 !    8.9   0.1   0.00055       1.3       2      23 ..     419     444 ..     418     450 .. 0.83
   9 ?   -1.0   0.0      0.72   1.6e+03       4      13 ..     576     585 ..     575     589 .. 0.82
  10 !   10.9   0.0   0.00013      0.29       1      13 [.     610     622 ..     610     654 .. 0.67
  11 !    5.9   0.0    0.0048        11       2      12 ..     656     666 ..     655     687 .. 0.88
  12 ?    1.8   0.0     0.091   2.1e+02       2      14 ..     714     730 ..     713     798 .. 0.71
  13 ?    4.4   0.5     0.014        32       4      30 ..     849     885 ..     847     888 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0093
                SCBHHHHHHHTT..............HHHHH CS
  PF00023.25  2 GfTPLHlAalrg..............nlevv 18
                 +TPLHl a+                +++vv
  MMETSP0890-20130614|2109_1 30 DWTPLHLFAQFQldptvaaleillagHTNVV 60
                58*******9887777777777777777766 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.027
                CBHHHHHHHTTHHHHH CS
  PF00023.25  3 fTPLHlAalrgnlevv 18
                +TP HlA++ ++ +++
  MMETSP0890-20130614|2109_1 69 DTPAHLACYANRRRIA 84
                7*********988876 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.66
                 CBHHHHHHHTT........HHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrg........nlevvklLls 23 
                  T LHl ++            +vv+ Ll+
  MMETSP0890-20130614|2109_1 153 ATLLHLLCSQEgaslpssvVERVVSELLD 181
                 58899988887666666666677777775 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.6
                 CBHHHHHHH CS
  PF00023.25   3 fTPLHlAal 11 
                 +TPLH  +l
  MMETSP0890-20130614|2109_1 192 NTPLHKICL 200
                 8****6665 PP

  == domain 5    score: 8.7 bits;  conditional E-value: 0.00061
                 TSCBHHHHHHHTT....HHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrg....nlevvklLl 22 
                 +G+TPLH A++        e + +Ll
  MMETSP0890-20130614|2109_1 223 HGRTPLHAACILAaqqqVSERIAWLL 248
                 7*********9876665555555555 PP

  == domain 6    score: 0.0 bits;  conditional E-value: 0.35
                 CBHHHHHHHTT.......H CS
  PF00023.25   3 fTPLHlAalrg.......n 14 
                 + P HlA+           
  MMETSP0890-20130614|2109_1 263 EYPVHLACAGCsdeikpeL 281
                 6788999987755554440 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.063
                 SCBHHHHHHHTT CS
  PF00023.25   2 GfTPLHlAalrg 13 
                 G+++LHl a+  
  MMETSP0890-20130614|2109_1 377 GNSALHLFAQQQ 388
                 9*******9987 PP

  == domain 8    score: 8.9 bits;  conditional E-value: 0.00055
                 SCBHHHHHHHTT....HHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrg....nlevvklLls 23 
                 G+TPLHl +l+       +v++ Ll 
  MMETSP0890-20130614|2109_1 419 GYTPLHLLCLHQkpspASDVLTALLA 444
                 9**********977777777777775 PP

  == domain 9    score: -1.0 bits;  conditional E-value: 0.72
                 BHHHHHHHTT CS
  PF00023.25   4 TPLHlAalrg 13 
                 T+LH+ ++r 
  MMETSP0890-20130614|2109_1 576 TALHILCSRA 585
                 9****99875 PP

  == domain 10    score: 10.9 bits;  conditional E-value: 0.00013
                 TSCBHHHHHHHTT CS
  PF00023.25   1 dGfTPLHlAalrg 13 
                 +G TPLHlA+++ 
  MMETSP0890-20130614|2109_1 610 NGSTPLHLACQYF 622
                 79********986 PP

  == domain 11    score: 5.9 bits;  conditional E-value: 0.0048
                 SCBHHHHHHHT CS
  PF00023.25   2 GfTPLHlAalr 12 
                 G+TPLHl +++
  MMETSP0890-20130614|2109_1 656 GWTPLHLFVQK 666
                 9******9976 PP

  == domain 12    score: 1.8 bits;  conditional E-value: 0.091
                 SCBHHHHHHHTT....H CS
  PF00023.25   2 GfTPLHlAalrg....n 14 
                 G+T LHl ++      +
  MMETSP0890-20130614|2109_1 714 GDTVLHLVCHACrksiG 730
                 89999999987744442 PP

  == domain 13    score: 4.4 bits;  conditional E-value: 0.014
                 BHHHHHHHTT............HHHHHHHHHHTTSSTTH CS
  PF00023.25   4 TPLHlAalrg............nlevvklLlsqGAdlna 30 
                 TPLHl ++               ++ +++Lls  A +na
  MMETSP0890-20130614|2109_1 849 TPLHLLCSALinselspaqtksAPQLIQCLLS--AAPNA 885
                 9******************************9..77776 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11   2.6e+02      25      55 ..       5      36 ..       2      37 .. 0.81
   2 ?    4.8   0.1     0.014        31      14      32 ..      66      84 ..      52      86 .. 0.74
   3 ?   -1.3   0.0       1.1   2.6e+03       2      25 ..     136     161 ..     135     166 .. 0.68
   4 ?    0.8   0.0      0.26   5.8e+02      10      22 ..     185     197 ..     179     201 .. 0.83
   5 !    7.4   0.1    0.0021       4.9      11      34 ..     219     243 ..     214     269 .. 0.73
   6 !   12.2   0.0   6.3e-05      0.14      14      55 ..     342     383 ..     336     384 .. 0.83
   7 !    9.6   0.1   0.00044         1       2      53 ..     405     461 ..     404     464 .. 0.75
   8 ?   -1.5   0.0       1.3     3e+03      13      25 ..     571     583 ..     564     587 .. 0.59
   9 !   11.2   0.0   0.00013       0.3       9      26 ..     604     621 ..     601     621 .. 0.92
  10 ?   -0.0   0.0      0.45     1e+03      44      55 ..     651     662 ..     642     669 .. 0.66
  11 ?    0.9   0.0      0.23   5.2e+02      13      25 ..     711     723 ..     694     728 .. 0.70
  12 ?   -0.8   0.0       0.8   1.8e+03       1      24 [.     792     816 ..     785     822 .. 0.87
  13 ?   -2.2   0.1       2.1   4.9e+03       8      24 ..     844     855 ..     825     857 .. 0.67
  14 ?   -0.9   0.0      0.88     2e+03       1      19 [.     878     896 ..     872     899 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.11
   PF13857.1 25 kggalevvrlLl.apgadlnlrdsdgltaldl 55
                 + + +++r L+ a++  + ++d++ +t+l+l
  MMETSP0890-20130614|2109_1  5 QKRCINALRRLVqAYPDGILCKDAYDWTPLHL 36
                56788999999988888888888888****97 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.014
   PF13857.1 14 eggntpLhlAakggalevv 32
                  + tp hlA+++++  ++
  MMETSP0890-20130614|2109_1 66 VDRDTPAHLACYANRRRIA 84
                3344********9987665 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.1
   PF13857.1   2 lehg.padvnatdeggn.tpLhlAak 25 
                 ++++ +a   ++d+++n t+Lhl ++
  MMETSP0890-20130614|2109_1 136 ISADvQALSSWRDKKNNaTLLHLLCS 161
                 556655666666777778****9998 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.26
   PF13857.1  10 natdeggntpLhl 22 
                 ++td++ ntpLh+
  MMETSP0890-20130614|2109_1 185 FTTDKHLNTPLHK 197
                 57999*******7 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0021
   PF13857.1  11 atdeggntpLhlAak.ggalevvrl 34 
                   d +g+tpLh A+  + +++v + 
  MMETSP0890-20130614|2109_1 219 LKDAHGRTPLHAACIlAAQQQVSER 243
                 56889*********98888877665 PP

  == domain 6    score: 12.2 bits;  conditional E-value: 6.3e-05
   PF13857.1  14 eggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldl 55 
                 ++++ +Lhl + +++++v++ L a+++ ++  ds g++al+l
  MMETSP0890-20130614|2109_1 342 KNNELVLHLVCANHSSWVLKALKARPSEAYEVDSAGNSALHL 383
                 55669*******66666666666*****************97 PP

  == domain 7    score: 9.6 bits;  conditional E-value: 0.00044
   PF13857.1   2 lehgpadvnatdeggntpLhlAak.gg...alevvrlLl.apgadlnlrdsdgltal 53 
                 l+++ ++++ ++++g+tpLhl +  +    a++v+  Ll a++ ++ +r   g+ta+
  MMETSP0890-20130614|2109_1 405 LKANEDAIMLQNKAGYTPLHLLCLhQKpspASDVLTALLaARPRAAAIRCYKGDTAI 461
                 5555588999*************9444222456666667888888888888888887 PP

  == domain 8    score: -1.5 bits;  conditional E-value: 1.3
   PF13857.1  13 deggntpLhlAak 25 
                 d++ +t+Lh+ ++
  MMETSP0890-20130614|2109_1 571 DRQYSTALHILCS 583
                 3333478887776 PP

  == domain 9    score: 11.2 bits;  conditional E-value: 0.00013
   PF13857.1   9 vnatdeggntpLhlAakg 26 
                 +n+ d++g+tpLhlA+ +
  MMETSP0890-20130614|2109_1 604 LNCVDKNGSTPLHLACQY 621
                 599*************75 PP

  == domain 10    score: -0.0 bits;  conditional E-value: 0.45
   PF13857.1  44 lrdsdgltaldl 55 
                 ++++ g+t+l+l
  MMETSP0890-20130614|2109_1 651 IQNTGGWTPLHL 662
                 455666666654 PP

  == domain 11    score: 0.9 bits;  conditional E-value: 0.23
   PF13857.1  13 deggntpLhlAak 25 
                  +gg t+Lhl ++
  MMETSP0890-20130614|2109_1 711 TNGGDTVLHLVCH 723
                 4567799998887 PP

  == domain 12    score: -0.8 bits;  conditional E-value: 0.8
   PF13857.1   1 Llehg.padvnatdeggntpLhlAa 24 
                 Lle + p + +++ ++g+ +Lh+ +
  MMETSP0890-20130614|2109_1 792 LLEQHaPGASHSLPGSGEMALHQLC 816
                 7888889999999999999999866 PP

  == domain 13    score: -2.2 bits;  conditional E-value: 2.1
   PF13857.1   8 dvnatdeggntpLhlAa 24 
                 +v+a      tpLhl +
  MMETSP0890-20130614|2109_1 844 VVDAA-----TPLHLLC 855
                 44433.....8888766 PP

  == domain 14    score: -0.9 bits;  conditional E-value: 0.88
   PF13857.1   1 Llehgpadvnatdeggntp 19 
                 Ll++ p++++ +d +gntp
  MMETSP0890-20130614|2109_1 878 LLSAAPNAAHNRDSNGNTP 896
                 4555544455556666666 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.025        57       1      23 [.      29      54 ..      29      60 .. 0.71
   2 ?    4.5   0.0      0.02        45       2      17 ..      68      83 ..      67      90 .. 0.83
   3 ?    1.4   0.0       0.2   4.7e+02       3      13 ..     153     163 ..     151     183 .. 0.59
   4 ?    0.5   0.1      0.41   9.5e+02       2      12 ..     191     201 ..     190     215 .. 0.75
   5 !    6.4   0.0     0.005        11       1      13 [.     223     235 ..     223     254 .. 0.69
   6 ?   -1.7   0.0       2.1   4.7e+03       3      13 ..     263     273 ..     261     287 .. 0.68
   7 ?    0.3   0.0      0.46   1.1e+03       2      21 ..     344     363 ..     343     369 .. 0.74
   8 ?    3.5   0.0     0.044     1e+02       2      15 ..     377     390 ..     376     411 .. 0.74
   9 !    6.9   0.0    0.0034       7.6       2      22 ..     419     443 ..     418     449 .. 0.72
  10 ?   -0.9   0.0       1.2   2.7e+03       2      14 ..     457     469 ..     456     488 .. 0.72
  11 ?    0.3   0.0      0.48   1.1e+03       4      12 ..     576     584 ..     573     590 .. 0.83
  12 !    7.0   0.0    0.0033       7.4       1      12 [.     610     621 ..     610     646 .. 0.73
  13 ?    1.5   0.0      0.18   4.2e+02       2      11 ..     656     665 ..     655     672 .. 0.85
  14 ?    4.4   0.1     0.023        51       2      16 ..     714     728 ..     713     736 .. 0.87
  15 ?   -2.2   0.0       2.9   6.7e+03      14      26 ..     824     836 ..     808     838 .. 0.61
  16 ?    1.3   0.1      0.21   4.9e+02       4      12 ..     849     857 ..     848     886 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.025
   PF13606.1  1 nGnTpLhlAasng...rielveaLle 23
                + +TpLhl a+++    ++++e+Ll 
  MMETSP0890-20130614|2109_1 29 YDWTPLHLFAQFQldpTVAALEILLA 54
                569********874333667777775 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.02
   PF13606.1  2 GnTpLhlAasngriel 17
                ++Tp hlA++ +r  +
  MMETSP0890-20130614|2109_1 68 RDTPAHLACYANRRRI 83
                68********998655 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.2
   PF13606.1   3 nTpLhlAasng 13 
                  T+Lhl +s+ 
  MMETSP0890-20130614|2109_1 153 ATLLHLLCSQE 163
                 59******973 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.41
   PF13606.1   2 GnTpLhlAasn 12 
                  nTpLh  + +
  MMETSP0890-20130614|2109_1 191 LNTPLHKICLS 201
                 69****99986 PP

  == domain 5    score: 6.4 bits;  conditional E-value: 0.005
   PF13606.1   1 nGnTpLhlAasng 13 
                 +G+TpLh A+   
  MMETSP0890-20130614|2109_1 223 HGRTPLHAACILA 235
                 69*******9854 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 2.1
   PF13606.1   3 nTpLhlAasng 13 
                 + p hlA+  +
  MMETSP0890-20130614|2109_1 263 EYPVHLACAGC 273
                 5699***9744 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.46
   PF13606.1   2 GnTpLhlAasngrielveaL 21 
                 ++ +Lhl++ n +  +++aL
  MMETSP0890-20130614|2109_1 344 NELVLHLVCANHSSWVLKAL 363
                 6789*****98766666665 PP

  == domain 8    score: 3.5 bits;  conditional E-value: 0.044
   PF13606.1   2 GnTpLhlAasngri 15 
                 Gn++Lhl a+++r+
  MMETSP0890-20130614|2109_1 377 GNSALHLFAQQQRL 390
                 9*********9974 PP

  == domain 9    score: 6.9 bits;  conditional E-value: 0.0034
   PF13606.1   2 GnTpLhlAasngri....elveaLl 22 
                 G+TpLhl + ++++    +++ aLl
  MMETSP0890-20130614|2109_1 419 GYTPLHLLCLHQKPspasDVLTALL 443
                 9*********997522335666665 PP

  == domain 10    score: -0.9 bits;  conditional E-value: 1.2
   PF13606.1   2 GnTpLhlAasngr 14 
                 G+T++ + ++ ++
  MMETSP0890-20130614|2109_1 457 GDTAISCLCRANS 469
                 89*******9886 PP

  == domain 11    score: 0.3 bits;  conditional E-value: 0.48
   PF13606.1   4 TpLhlAasn 12 
                 T+Lh+ +s+
  MMETSP0890-20130614|2109_1 576 TALHILCSR 584
                 9******96 PP

  == domain 12    score: 7.0 bits;  conditional E-value: 0.0033
   PF13606.1   1 nGnTpLhlAasn 12 
                 nG TpLhlA+++
  MMETSP0890-20130614|2109_1 610 NGSTPLHLACQY 621
                 799*******96 PP

  == domain 13    score: 1.5 bits;  conditional E-value: 0.18
   PF13606.1   2 GnTpLhlAas 11 
                 G+TpLhl ++
  MMETSP0890-20130614|2109_1 656 GWTPLHLFVQ 665
                 9*****9876 PP

  == domain 14    score: 4.4 bits;  conditional E-value: 0.023
   PF13606.1   2 GnTpLhlAasngrie 16 
                 G+T+Lhl+++ +r++
  MMETSP0890-20130614|2109_1 714 GDTVLHLVCHACRKS 728
                 89*******988876 PP

  == domain 15    score: -2.2 bits;  conditional E-value: 2.9
   PF13606.1  14 rielveaLlenga 26 
                  +++++aLl++++
  MMETSP0890-20130614|2109_1 824 TVAMLNALLKAHP 836
                 4678889988875 PP

  == domain 16    score: 1.3 bits;  conditional E-value: 0.21
   PF13606.1   4 TpLhlAasn 12 
                 TpLhl +s 
  MMETSP0890-20130614|2109_1 849 TPLHLLCSA 857
                 9******94 PP

>> PF12019.3  Type II transport protein GspH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.34      11      48 ..     919     955 ..     916    1018 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
   PF12019.3  11 lARseAvkrgqpvtvcpssdggqcggdWssgwivfsda 48 
                 +A s+A+++ +++ vc  +d+++c    +   i+ +++
  MMETSP0890-20130614|2109_1 919 FATSQAMSSKENIVVCTLEDTNDC-KRKNEYYITPTQQ 955
                 899*********************.3355555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.58u 0.37s 00:00:01.95 Elapsed: 00:00:00.84
# Mc/sec: 3026.83
//
Query:       MMETSP0890-20130614|2111_1  [L=1179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-29  102.0   0.0      2e-13   50.5   0.0    2.8  2  PF00005.22 ABC transporter
    8.8e-21   74.4  19.3    3.3e-11   43.0   2.6    2.7  2  PF00664.18 ABC transporter transmembrane region
    9.2e-06   25.7   0.0       0.12   12.1   0.0    3.2  3  PF13304.1  AAA domain
    1.1e-05   24.6   6.0    0.00091   18.3   0.1    3.6  3  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0011   18.8   0.2       0.86    9.5   0.0    2.6  2  PF01926.18 50S ribosome-binding GTPase
     0.0012   18.8   0.5        0.2   11.6   0.0    3.1  2  PF13401.1  AAA domain
     0.0034   16.6   0.1        3.7    6.7   0.0    2.9  2  PF13481.1  AAA domain
     0.0058   15.7   0.6          2    7.5   0.0    2.3  2  PF03193.11 Protein of unknown function, DUF258
     0.0064   16.8   2.1          1    9.7   0.1    2.8  2  PF08477.8  Miro-like protein
     0.0088   16.7   1.9          2    9.1   0.0    3.1  2  PF13207.1  AAA domain
  ------ inclusion threshold ------
      0.015   14.2   0.2       0.29   10.0   0.0    2.3  2  PF06414.7  Zeta toxin
      0.024   14.0   1.4       0.29   10.5   0.0    2.7  2  PF13555.1  P-loop containing region of AAA domain
      0.041   13.4   2.3       0.76    9.3   0.3    2.5  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.057   13.6   4.6        2.9    8.0   0.1    3.7  3  PF13238.1  AAA domain
      0.071   11.6   1.0       0.52    8.7   0.1    2.2  2  PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
      0.078   12.2   1.6        1.5    8.0   0.2    2.8  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.079   12.5   0.3          2    8.0   0.0    3.2  4  PF07728.9  AAA domain (dynein-related subfamily)
      0.096   12.3   0.9       0.96    9.1   0.1    2.7  2  PF13245.1  Part of AAA domain
       0.12   12.0   6.2        2.3    7.8   0.0    3.0  3  PF01935.12 Domain of unknown function DUF87
       0.16   11.6   0.5        2.7    7.6   0.1    2.4  2  PF00350.18 Dynamin family
       0.21   10.9   2.8        1.3    8.4   0.3    2.5  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
       0.33    9.8   2.8        2.1    7.1   0.0    2.8  3  PF13175.1  AAA ATPase domain
       0.42    9.7   5.2         17    4.3   0.1    3.4  4  PF12846.2  AAA-like domain
       0.45   10.7   0.0       0.45   10.7   0.0    2.3  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.6e-16     2e-13       3     114 ..     293     401 ..     291     404 .. 0.85
   2 !   48.4   0.0   1.6e-15   9.2e-13       1     118 []     959    1082 ..     959    1082 .. 0.93

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3.6e-16
                 HHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   3 Llklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLD 114
                 L+kll+g ++  +  i+ +          + +++  +gy pqdp+   + t++en+ +++++  +++++ ++++  +ld+++d+          +r++tLSgGq  r++ Ara+ ++p+lllLD
  MMETSP0890-20130614|2111_1 293 LIKLLLGRTT--SKNITSS----------IMHVDasLGYAPQDPFVA-SGTIEENILFGRPK--SEAKLIKAIRIACLDHDIDSmpqglatllgERGTTLSGGQMARLQVARAIYNDPNLLLLD 401
                 5666666655..3333333..........2233344**********9.*********99999..8******************9***************************************9 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 1.6e-15
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HH.HH--........----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22    1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvglde.lldk........srvstLSgGqkqrvalArallkkpklllLDEPtn 118 
                  ST+l +l ++++  +g+i++d+   d++s  l++lr  +  ipq++ l+ + +++ n+d++ e+   dk++ ++le vgl+  ll++           s+LS Gq+q +al+ra+l+k+k+ ++DE+t+
  MMETSP0890-20130614|2111_1  959 STILVCLFRLVDICQGSISIDG--IDISSLGLTALRkrLTLIPQEAVLM-KGSAKFNCDPFGEY--NDKTVADALEVVGLSRnLLHQdvvdqdgdGDDSSLSTGQAQLLALCRAILRKSKVCCFDEATA 1082
                  9********************4..46788889999999***********.9*************..8***************55555******999999****************************96 PP

>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   2.6   5.8e-14   3.3e-11     125     271 ..      57     200 ..      34     202 .. 0.90
   2 !   36.9   5.0     4e-12   2.3e-09       4     161 ..     599     746 ..     594     838 .. 0.77

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 5.8e-14
  PF00664.18 125 slatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtflsvisgelsvgtvfaflslglql 271
                 + +++ g++iv+++lg +++++l+  ++l++ ++ +++++ k+++ +  ++++++ a ++ a+++ + +k f++e+++  r+++ ++ ++ + i + ++   l+  +  +++++ +++  + t l  ++g+ +  + fa++ ++ ++
  MMETSP0890-20130614|2111_1  57 FTSIIGGLIIVGVFLGFSALVALV-SMILIGSFQQYFTHVAKKIEPQVTSKRDDVLASISRAIRASKALKFFAWESQFASRIHDLRN-KHASKIIAYRLRIMLSVSMGKAFPIVATVCTLLTTAL-QHNGQVQAEDAFAVIAVFQTV 200
                 556777888888888888888888.**************************************************************.999999999999999999*******778888888888.9**************999875 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 4e-12
  PF00664.18   4 aillailagvtalvfplllgrlldsvsdgndeersslyslailliavgvlivlllqgsfyllertgqrirkrlfrallrkilglfdsffdknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavl 161
                 +i l +lag++ ++  ++l+++++  + +       +y +a+ ++a++ l +l++ g  +l++  ++r  ++++++l++ +l+++ sff+ +++G++ sr+ +D ++++  lg+ l  +++ +++f ++li m+++ + l+ ++   + ++++v++ +
  MMETSP0890-20130614|2111_1 599 IIGLYLLAGFVLFASDIILAQWTKAKTGY------YKYMIAYAVVALTHLPCLVIGG--ILGVFAAERGGSKFHHELVWAVLRAPISFFESTPSGRIISRFGSDFDTLDLELGQMLDGWLTMVSLFAVLLIAMCIVTPLLFPLIA--FCCYGMVQFLW 746
                 45555566666666666666666622222......1233333333333333333333..336688999999***********************************************************************999..66777777665 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.1   1.2e+03       1      21 [.     279     299 ..     279     319 .. 0.84
   2 !    9.2   0.0    0.0016      0.93       3      25 ..     949     973 ..     948    1001 .. 0.73
   3 !   12.1   0.0   0.00022      0.12     222     286 ..    1039    1104 ..    1010    1116 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2.1
   PF13304.1   1 lnviiGpNgsGKSnlLkaldf 21 
                 + +++G  g+GK+ l+k l +
  MMETSP0890-20130614|2111_1 279 FICVVGSVGTGKTQLIKLLLG 299
                 6799************99965 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0016
   PF13304.1   3 viiGpNgsGKSnlLkaldflfr..d 25 
                 +i+G+ g+GKS++L +l+ l +   
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTILVCLFRLVDicQ 973
                 79***************99976542 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00022
   PF13304.1  222 iflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHP....kllrrliellkels 286 
                  +  + + +g+ + s+lS G+ +llal  a+l+     +v ++DE  ++++      ++r +++ +k+++
  MMETSP0890-20130614|2111_1 1039 HQDVVDQDGDGDDSSLSTGQAQLLALCRAILRKS---KVCCFDEATAHIDSntdaNIQRVIAREFKDST 1104
                  5555566777777889****************99...*************9999888888889997765 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.032        18      25      61 ..     278     311 ..     270     344 .. 0.87
   2 ?    2.7   0.0     0.099        57      27      46 ..     948     966 ..     933     971 .. 0.77
   3 !   18.3   0.1   1.6e-06   0.00091     121     211 ..    1022    1124 ..     992    1130 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.032
                 SEEEE--------HHHHHHHHHH------.------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  25 sftaivGpNGSGKsnvldAilFvLGeksakklrsekl 61 
                 +f ++vG+ G GK+ ++  +   LG +++k++ s+ +
  MMETSP0890-20130614|2111_1 278 KFICVVGSVGTGKTQLIKLL---LGRTTSKNITSSIM 311
                 799*************9877...99999998877655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.099
                 EEE--------HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAilF 46 
                   ivG+ G+GKs +l  + F
  MMETSP0890-20130614|2111_1 948 AGIVGRTGAGKSTILVCL-F 966
                 46***********99766.5 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 1.6e-06
                  HHHHHHHHCTT--TT................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE-- CS
                  xxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  121 kevaellesagiske................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklvgv 211 
                  k va+ le +g+s++                +LS G+ +L+al+   Ai +   + ++++De  a++D +  +++ +++ ++ k++ ++ i++r +++ k dk++ +
  MMETSP0890-20130614|2111_1 1022 KTVADALEVVGLSRNllhqdvvdqdgdgddsSLSTGQAQLLALC--RAILRK--SKVCCFDEATAHIDSNTDANIQRVIAREFKDSTLLTIAHRIHTIIKYDKVIVM 1124
                  55666666666666677777777777777779*******97665..567655..556789*************************************9999998755 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.011       6.5       2      28 ..     280     308 ..     279     326 .. 0.79
   2 !    9.5   0.0    0.0015      0.86       2      20 ..     948     966 ..     947    1010 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.011
                 EEEE--TT---HHHHHHHHCST..CTEET CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek..aakvs 28 
                 +++vG   +GK+ Li+ L+g++  + ++s
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRTtsKNITS 308
                 89*****************7432244554 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0015
                 EEEE--TT---HHHHHHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLt 20 
                 ++ivGr+ +GKSt++  L+
  MMETSP0890-20130614|2111_1 948 AGIVGRTGAGKSTILVCLF 966
                 79************98776 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00035       0.2       4      30 ..     277     303 ..     273     359 .. 0.79
   2 ?    3.9   0.1     0.086        49       9      29 ..     950     970 ..     948    1115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00035
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqlde 30 
                  ++++v+G  G+GKT l++ l+ +   
  MMETSP0890-20130614|2111_1 277 GKFICVVGSVGTGKTQLIKLLLGRTTS 303
                 6899***************99987643 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.086
   PF13401.1   9 vtGesGvGKTtllrrlarqld 29 
                 ++G +G+GK+t l  l+r  d
  MMETSP0890-20130614|2111_1 950 IVGRTGAGKSTILVCLFRLVD 970
                 79*********9988888654 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0065       3.7      30      56 ..     274     300 ..     250     316 .. 0.84
   2 !    6.5   0.0    0.0076       4.3      30      53 ..     942     965 ..     937     975 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0065
   PF13481.1  30 lprgsltllaGapgtGKStlalqlaaa 56 
                 ++rg +++++G+ gtGK+ l+  l+++
  MMETSP0890-20130614|2111_1 274 IARGKFICVVGSVGTGKTQLIKLLLGR 300
                 679***************998777665 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0076
   PF13481.1  30 lprgsltllaGapgtGKStlalql 53 
                 l++g+ + ++G++g+GKSt+++ l
  MMETSP0890-20130614|2111_1 942 LDPGCQAGIVGRTGAGKSTILVCL 965
                 57899999***********99865 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0034         2      33      61 ..     275     303 ..     256     318 .. 0.83
   2 !    6.1   0.0    0.0089       5.1      38      66 ..     948     976 ..     933     981 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0034
                 CTTSBEEEE-------HHHHHHH------ CS
  PF03193.11  33 lkdktsvlvGqSGvGKSsLinallpeldl 61 
                  ++k++++vG+ G GK+ Li+ ll++++ 
  MMETSP0890-20130614|2111_1 275 ARGKFICVVGSVGTGKTQLIKLLLGRTTS 303
                 467999*****************987644 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0089
                 EEEE-------HHHHHHH--------S-- CS
  PF03193.11  38 svlvGqSGvGKSsLinallpeldlkvgev 66 
                 + +vG++G+GKS+++  l    d+  g++
  MMETSP0890-20130614|2111_1 948 AGIVGRTGAGKSTILVCLFRLVDICQGSI 976
                 459***********998877666666665 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0018         1       2      30 ..     280     308 ..     280     319 .. 0.81
   2 ?    5.6   0.1     0.034        19       3      21 ..     949     967 ..     947     991 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0018
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklp 30 
                 + vvG+ g+GK+ l++ l+g++ +k+ + 
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRTTSKNITS 308
                 68*******************99944333 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.034
   PF08477.8   3 vvvGdkgvGKssllsqlvg 21 
                  +vG +g+GKs++l+ l++
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTILVCLFR 967
                 59************98876 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0035         2       2      32 ..     280     315 ..     279     414 .. 0.75
   2 ?    5.8   0.1     0.036        21       3      15 ..     949     961 ..     949     995 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0035
                 E--B--TT---HHHHHHH.....HHHSTEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeL.....aerlglpvlsldd 32 
                 i+++G  G+GK+ l k+L     ++     + + d+
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLlgrttSKNITSSIMHVDA 315
                 9****************9333333222333455555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.036
                 --B--TT---HHH CS
   PF13207.1   3 aitGppGsGKsTl 15 
                 +i+G +G+GKsT+
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTI 961
                 69**********9 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00051      0.29      16      49 ..     277     314 ..     269     316 .. 0.81
   2 ?    1.6   0.0       0.2   1.2e+02      21      33 ..     950     962 ..     949     980 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00051
   PF06414.7  16 pkavllgGqpGAGKtslaellleela....agnivrid 49 
                  k++ ++G+ G GKt+l++lll++++    + +i+++d
  MMETSP0890-20130614|2111_1 277 GKFICVVGSVGTGKTQLIKLLLGRTTskniTSSIMHVD 314
                 57899*******************99555555566665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.2
   PF06414.7  21 lgGqpGAGKtsla 33 
                 ++G +GAGK++++
  MMETSP0890-20130614|2111_1 950 IVGRTGAGKSTIL 962
                 68********986 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2      0.39   2.2e+02      20      40 ..     275     294 ..     268     308 .. 0.81
   2 ?   10.5   0.0   0.00051      0.29      25      40 ..     947     962 ..     935     969 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.39
   PF13555.1  20 dpkgkntlltGasGsGKSTll 40 
                 + +gk   ++G  G GK+ l+
  MMETSP0890-20130614|2111_1 275 A-RGKFICVVGSVGTGKTQLI 294
                 4.577999*********9887 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00051
   PF13555.1  25 ntlltGasGsGKSTll 40 
                 +  ++G++G+GKST+l
  MMETSP0890-20130614|2111_1 947 QAGIVGRTGAGKSTIL 962
                 6679**********98 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3    0.0013      0.76       2      37 ..     279     313 ..     278     318 .. 0.85
   2 ?    3.1   0.0      0.11        62       3      20 ..     948     965 ..     946     970 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0013
                 EEEEE-------HHHHHHHHHHHHH-------EEE- CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyrvavvkhl 37 
                  + vvG  ++GKT li+ l+   ++++++   + h+
  MMETSP0890-20130614|2111_1 279 FICVVGSVGTGKTQLIKLLLGRTTSKNITSS-IMHV 313
                 588*****************99999998877.5555 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.11
                 EEEE-------HHHHHHH CS
   PF03205.9   3 vavvGpkdsGKTtliekl 20 
                   +vG ++ GK+t++  l
  MMETSP0890-20130614|2111_1 948 AGIVGRTGAGKSTILVCL 965
                 579**********98665 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0051       2.9       1      23 [.     280     303 ..     280     337 .. 0.75
   2 ?    0.3   0.1       1.2     7e+02      53     108 ..     445     496 ..     417     518 .. 0.69
   3 ?    4.2   0.1     0.079        45       3      16 ..     950     963 ..     949     985 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0051
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.g 23 
                 I+++G  G+GKt l k+L  r+ +
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRTtS 303
                 99****************544432 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.2
   PF13238.1  53 edkldelldkleeneselaegenviidghlaeleledlkdlklvvLradpeelarR 108
                 e +l+e+ + +++ ++   ++ + i+ ++   + + d +d++  +L+a+  ++++ 
  MMETSP0890-20130614|2111_1 445 ECILMENGRLIAQAPA---QELIEILKSREKKHVDTDEDDFP-AHLYATLKQYYDK 496
                 4455555555555543...44444677777777777777666.7777766666665 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.079
   PF13238.1   3 itGtpGvGKtTlak 16 
                 i+G +G+GK+T++ 
  MMETSP0890-20130614|2111_1 950 IVGRTGAGKSTILV 963
                 99*********986 PP

>> PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00092      0.52      17      40 ..     279     302 ..     267     312 .. 0.83
   2 ?    0.7   0.0      0.24   1.4e+02      19      37 ..     949     967 ..     945     973 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00092
   PF10412.4  17 hilivGttGtGKtqalrelldqir 40 
                  i++vG++GtGKtq+++ ll +  
  MMETSP0890-20130614|2111_1 279 FICVVGSVGTGKTQLIKLLLGRTT 302
                 5799*************9997765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.24
   PF10412.4  19 livGttGtGKtqalrelld 37 
                  ivG tG+GK+++l  l +
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTILVCLFR 967
                 699*********9987765 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0027       1.5       3      22 ..     280     299 ..     278     314 .. 0.80
   2 ?    2.0   0.0      0.19   1.1e+02       4      21 ..     949     966 ..     947     975 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0027
                 EEEE-------HHHHHHHHC CS
  PF02492.14   3 tvltGflGsGKTtLleklle 22 
                 + ++G++G GKT L++ ll 
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLG 299
                 5799************9995 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.19
                 EEE-------HHHHHHHH CS
  PF02492.14   4 vltGflGsGKTtLlekll 21 
                  ++G  G+GK+t+l  l 
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTILVCLF 966
                 689*********997665 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0035         2       2      25 ..     280     304 ..     280     317 .. 0.80
   2 ?   -2.0   0.0       4.1   2.3e+03       4      16 ..     950     962 ..     950     971 .. 0.84
   3 ?   -1.4   0.0       2.7   1.6e+03      62      75 ..    1067    1081 ..    1050    1096 .. 0.77
   4 ?   -1.7   0.0       3.4     2e+03      82     115 ..    1109    1146 ..    1099    1166 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0035
                 EEEE------HHHHHHHGGGGB.S- CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal.nr 25 
                 +++vG  GtgK++l+++l+ ++  +
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRTtSK 304
                 589***************9999533 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 4.1
                 EE------HHHHH CS
   PF07728.9   4 LvGppGtgKsela 16 
                 +vG +G gKs++ 
  MMETSP0890-20130614|2111_1 950 IVGRTGAGKSTIL 962
                 59********986 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2.7
                  ---.G-SEEEEESGG CS
   PF07728.9   62 aar.egeilvlDEve 75  
                  a+  +++++++DE +
  MMETSP0890-20130614|2111_1 1067 AILrKSKVCCFDEAT 1081
                  43349********87 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 3.4
                  HHHHHHHHHSSEEE..----EEE---...........- CS
   PF07728.9   82 lnsLlslleerrlllpeggelvkakndd.llek...nf 115 
                  + + ++++  +++ ++e g+++ +++++ ll++   +f
  MMETSP0890-20130614|2111_1 1109 AHRIHTIIKYDKVIVMEDGHVAAFDEPFkLLQDnesSF 1146
                  55667777777777777777777777766666555555 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0017      0.96       7      48 ..     275     313 ..     272     327 .. 0.74
   2 ?    0.2   0.1         1   5.8e+02      16      30 ..     951     965 ..     948     976 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0017
   PF13245.1   7 lagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllv 48 
                 ++  + + v G  GtGKT  l+++   +    +k+  +s++ v
  MMETSP0890-20130614|2111_1 275 AR-GKFICVVGSVGTGKT-QLIKLLLGRT--TSKNiTSSIMHV 313
                 45.667777*********.7777766666..456777777766 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1
   PF13245.1  16 tGgPGtGKTttlaai 30 
                  G  G+GK+t l+++
  MMETSP0890-20130614|2111_1 951 VGRTGAGKSTILVCL 965
                 6889*****655554 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.014       7.9      26      52 ..     280     306 ..     277     324 .. 0.85
   2 ?   -1.3   0.2       2.4   1.4e+03      99     165 ..     460     541 ..     455     577 .. 0.54
   3 ?    7.8   0.0    0.0041       2.3      27      44 ..     949     966 ..     945     970 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.014
  PF01935.12  26 lAilgsTGsGKSntvavLleellekkg 52 
                 ++++gs G+GK+ ++++Ll +  +k+ 
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRTTSKNI 306
                 589****************99995443 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.4
  PF01935.12  99 peelldlleelkddepaaeaqrsvleealeqaka..keekeklssdep.veklleelk.............kekeelrklknq 165
                  +el+++l+ ++++  + + ++++ +++++++k+  ++++++ls++++ +e   ++ +             + +++++k+ ++
  MMETSP0890-20130614|2111_1 460 AQELIEILKSREKKHVD-TDEDDFPAHLYATLKQyyDKNIGDLSAEDLpLENDVDSEYnndqiiivstadeQPNSSNMKEEQS 541
                 57888888884444333.33677777777777777778888888776313333333336777777765443222233333333 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0041
  PF01935.12  27 AilgsTGsGKSntvavLl 44 
                 +i+g+TG+GKS+    L+
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTILVCLF 966
                 8***********987776 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0048       2.7       1      31 [.     280     307 ..     280     328 .. 0.87
   2 ?    1.6   0.0      0.34   1.9e+02       3      17 ..     950     964 ..     948     967 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0048
                 EEEE--TT---HHHHHHH------------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgpt 31 
                 i+vvGs+ +GK+ l++ Llg+    +++++t
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRT---TSKNIT 307
                 89******************98...555554 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.34
                 EE--TT---HHHHHH CS
  PF00350.18   3 vvGsqSaGKSSllna 17 
                 +vG   aGKS++l  
  MMETSP0890-20130614|2111_1 950 IVGRTGAGKSTILVC 964
                 89*********9965 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0022       1.3      12      44 ..     274     306 ..     271     377 .. 0.87
   2 ?    1.0   0.1       0.4   2.3e+02      15      35 ..     945     965 ..     938     978 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0022
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  12 ivqGqttlipGafgcGktvisqslsknsnsdai 44 
                 i++G+ ++++G  g+Gkt +++ l   ++s++i
  MMETSP0890-20130614|2111_1 274 IARGKFICVVGSVGTGKTQLIKLLLGRTTSKNI 306
                 789******************999888777766 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.4
                 xxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  15 GqttlipGafgcGktvisqsl 35 
                 G +++i+G  g+Gk++i+  l
  MMETSP0890-20130614|2111_1 945 GCQAGIVGRTGAGKSTILVCL 965
                 7889*************9766 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.56   3.2e+02      22      50 ..     276     305 ..     245     318 .. 0.77
   2 ?   -0.9   1.0         1   5.8e+02     254     298 ..     465     520 ..     459     551 .. 0.54
   3 ?    7.1   0.0    0.0037       2.1      14      44 ..     937     967 ..     932     979 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.56
   PF13175.1  22 e.slnviiGeNgsGKttILealeklknrkn 50 
                 + +++  +G  g+GKt++++ l   +++kn
  MMETSP0890-20130614|2111_1 276 RgKFICVVGSVGTGKTQLIKLLLGRTTSKN 305
                 4567799*************9944444443 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1
   PF13175.1 254 kildeneesikknqenleeeinkklqkllkkklsnlk..............anekikln 298
                 +il+      kk  ++ e++   +l+ +lk+++++++              ++e+++++
  MMETSP0890-20130614|2111_1 465 EILKSR---EKKHVDTDEDDFPAHLYATLKQYYDKNIgdlsaedlplendvDSEYNNDQ 520
                 445433...24577777788888888888888877765554444444333322222222 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0037
   PF13175.1  14 sleeinlde.slnviiGeNgsGKttILealek 44 
                 s+ +++ld+ + + i+G  g+GK+tIL++l++
  MMETSP0890-20130614|2111_1 937 SV-SFSLDPgCQAGIVGRTGAGKSTILVCLFR 967
                 55.77888855568****************54 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1      0.03        17       4      33 ..     280     309 ..     278     321 .. 0.82
   2 ?    1.1   0.1      0.29   1.6e+02     141     215 ..     461     535 ..     448     546 .. 0.70
   3 ?    4.2   0.0     0.033        19       6      23 ..     950     967 ..     946    1000 .. 0.86
   4 ?   -3.3   0.0       6.3   3.6e+03     245     271 ..    1066    1098 ..    1021    1101 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.03
   PF12846.2   4 tlilGppGsGKSvllkklvlqllargprvv 33 
                 ++++G  G GK+ l+k l+ +  +++    
  MMETSP0890-20130614|2111_1 280 ICVVGSVGTGKTQLIKLLLGRTTSKNITSS 309
                 579****************99999885544 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.29
   PF12846.2 141 gdllealreeeeelaeealarderreaaeelalalerlldgalgelFdgpttfdldld.....ariivfdlsglkgpgte 215
                  +l+e+l++ e     ++ +++++++  ++l ++l+++ d ++g+l ++  +++ d d      +ii++ + + ++++++
  MMETSP0890-20130614|2111_1 461 QELIEILKSRE-----KKHVDTDEDDFPAHLYATLKQYYDKNIGDLSAEDLPLENDVDseynnDQIIIVSTADEQPNSSN 535
                 56666766666.....333333358999*****************65555554444446677779999999887766555 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.033
   PF12846.2   6 ilGppGsGKSvllkklvl 23 
                 i+G +G+GKS+ l  l++
  MMETSP0890-20130614|2111_1 950 IVGRTGAGKSTILVCLFR 967
                 9**********9987755 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 6.3
   PF12846.2  245 d......kllviDEahrllgspegadfldelar 271 
                  +      k+ ++DEa   ++s++ a++ + +ar
  MMETSP0890-20130614|2111_1 1066 RailrksKVCCFDEATAHIDSNTDANIQRVIAR 1098
                  033334499999999988888877776666665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       4.9   2.8e+03      20      37 ..     278     295 ..     264     304 .. 0.83
   2 ?   10.7   0.0   0.00078      0.45      23      38 ..     949     964 ..     934     968 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 4.9
   PF13476.1  20 gltlItGpNGsGKTTild 37 
                 + ++++G  G+GKT +++
  MMETSP0890-20130614|2111_1 278 KFICVVGSVGTGKTQLIK 295
                 57899*********8876 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00078
   PF13476.1  23 lItGpNGsGKTTildA 38 
                  I+G +G+GK+Til +
  MMETSP0890-20130614|2111_1 949 GIVGRTGAGKSTILVC 964
                 59***********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       725  (0.0530281); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.95u 0.38s 00:00:02.33 Elapsed: 00:00:01.08
# Mc/sec: 2616.02
//
Query:       MMETSP0890-20130614|2121_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-22   78.8   0.0    2.5e-22   78.8   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    3.1e-11   42.7   0.0    8.5e-08   31.7   0.0    2.0  2  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
        1.4    9.0   4.7        8.6    6.6   0.0    3.0  3  PF13516.1 Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   5.6e-26   2.5e-22      19      90 ..       2      73 ..       1      75 [] 0.96

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 5.6e-26
   PF13306.1 19 ipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinips 90
                +p  +t+Ig  aF++c+sl+++t+p  lt+ig +aF+ c+slt++t++ +lt+ig+ aF++c+sl+++++p 
  MMETSP0890-20130614|2121_1  2 LPAGLTRIGGGAFEGCTSLTHVTMPAGLTTIGYEAFYRCTSLTKLTLSADLTTIGDAAFYDCTSLTHLTLPA 73
                7999****************************************************************9985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00016      0.74      37      55 ..       6      24 ..       4      28 .. 0.73
   2 !   31.7   0.0   1.9e-11   8.5e-08      13      56 ..      29      71 ..      24      73 .. 0.96

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00016
   PF13855.1 37 lksispeafkgLpsLreLn 55
                l++i  +af+g++sL+++ 
  MMETSP0890-20130614|2121_1  6 LTRIGGGAFEGCTSLTHVT 24
                5677777777887777765 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 1.9e-11
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+ +aF ++++L++L Ls   l++i + af +++sL++L L
  MMETSP0890-20130614|2121_1 29 LTTIGYEAFYRCTSLTKLTLS-ADLTTIGDAAFYDCTSLTHLTL 71
                89999****************.********************98 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.53   2.4e+03       1       6 [.      17      22 ..      17      25 .. 0.83
   2 ?    6.6   0.0    0.0019       8.6       1      16 [.      40      57 ..      40      60 .. 0.81
   3 ?    2.5   0.5      0.04   1.8e+02       1       9 [.      63      71 ..      63      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.53
   PF13516.1  1 lknLts 6 
                +++Lt+
  MMETSP0890-20130614|2121_1 17 CTSLTH 22
                899998 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0019
   PF13516.1  1 lknLtsLdLsn..Nqigd 16
                +++Lt L Ls   + igd
  MMETSP0890-20130614|2121_1 40 CTSLTKLTLSAdlTTIGD 57
                99*******954577887 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.04
   PF13516.1  1 lknLtsLdL 9 
                +++Lt+L L
  MMETSP0890-20130614|2121_1 63 CTSLTHLTL 71
                99*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 268.25
//
Query:       MMETSP0890-20130614|2133_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-06   28.0   0.2    0.00015   21.9   0.0    2.5  2  PF00856.23 SET domain
     0.0086   15.8   0.7      0.028   14.2   0.5    2.0  1  PF09273.6  Rubisco LSMT substrate-binding


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.1e-08   0.00015      91     164 .]     161     232 ..      86     232 .. 0.84
   2 !    3.8   0.0    0.0076        52      53     104 ..     364     439 ..     235     449 .. 0.55

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.1e-08
                 HHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  91 esaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                 ++ ++ +++s  + + e +++    +++p+ +flNH   +N+ ++ +  +++ ++++ ++  I++++E+ti+Yg
  MMETSP0890-20130614|2133_1 161 WAISMVRSRSFCFLTSEGDDEMKQYGMFPFCDFLNHQTFSNAKWTSS--LESSALIISSRFCIEPDTEITISYG 232
                 6667777777777788888888999***********99779999988..6999999999999***********9 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0076
                 C........................HHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS CS
                 x........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  53 s........................takskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdele 104
                                           + +  +k  +s +++  ++ ++ ++++++aa+ +ase ++  +++++++ 
  MMETSP0890-20130614|2133_1 364 IcadvardvmsmtnerqaleillnvIDSQLAEKFPTSLREDLYEASHADSINARNAAKALASEKLVLYHWRCTFFR 439
                 0333333333333333333333334344445556688999999999999999999999999999999999998876 PP

>> PF09273.6  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.5   4.1e-06     0.028      64     128 .]     358     430 ..     296     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.1e-06
                 -........--TTT---HHHHHHHHHHHHHHHHHHH-.---S-HHHHHHH.H-----HHHHHH-------HHHH CS
   PF09273.6  64 i........stkeaplskenEekvlqvladlcaeaLs.eypttleeDeallkkadleeqkrlavrlRlgEKrIL 128
                 +         ++ +++s  nE+++l++l +++ + L+ ++pt l eD   +  ad+ + +r+a++   +EK +L
  MMETSP0890-20130614|2133_1 358 DtddsiicaDVARDVMSMTNERQALEILLNVIDSQLAeKFPTSLREDLYEASHADSIN-ARNAAKALASEKLVL 430
                 133444467788999*****************9988626********99999999987.************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:01.61
# Mc/sec: 753.14
//
Query:       MMETSP0890-20130614|2137_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-18   65.6   0.1    3.6e-18   64.9   0.1    1.3  1  PF08373.5 RAP domain
  ------ inclusion threshold ------
       0.13   10.6   0.0       0.16   10.3   0.0    1.1  1  PF05626.6 Protein of unknown function (DUF790)


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.1   5.3e-22   3.6e-18       1      58 []      70     130 ..      70     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 5.3e-22
   PF08373.5   1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnelqgkeekldYlkei 58 
                 ie+dGpth+++   ++    g tk+K r+L+ lGw vi+ipyfeW+ l +   +  Y++++
  MMETSP0890-20130614|2137_1  70 IEVDGPTHYLKSKeKQGIenGRTKFKSRLLRRLGWTVIHIPYFEWHLLIDAAAQDSYVRSK 130
                 9********77764444467****************************99999999*9975 PP

>> PF05626.6  Protein of unknown function (DUF790)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.3e-05      0.16     173     230 ..      45     104 ..      30     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.3e-05
   PF05626.6 173 fkeilrkikrlgLmyeiedaekgleieldGPasllkmserYGtsl..AkllpallkakkW 230
                 ++++++ + r gL   + + e  + ie+dGP+  lk+ e+ G++    k+ + ll+  +W
  MMETSP0890-20130614|2137_1  45 WNHAFEFVTREGLSLDMAQPETMTAIEVDGPTHYLKSKEKQGIENgrTKFKSRLLRRLGW 104
                 9999***********9999999********************864115666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 430.03
//
Query:       MMETSP0890-20130614|2139_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-05   24.6   9.8    2.9e-05   23.1   6.8    1.6  1  PF01545.16 Cation efflux family
     0.0059   16.2   2.4     0.0093   15.5   0.2    2.0  2  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
     0.0074   15.8   2.6     0.0082   15.7   0.5    2.0  2  PF09605.5  Hypothetical bacterial integral membrane protein (Trep_Strep)
  ------ inclusion threshold ------
       0.16   11.4   2.6        0.9    9.0   1.0    2.4  3  PF06930.7  Protein of unknown function (DUF1282)
       0.18   10.9   2.6       0.18   10.9   0.7    1.8  2  PF00335.15 Tetraspanin family
       0.24   11.0   1.5        1.4    8.6   0.2    2.2  2  PF03511.9  Fanconi anaemia group A protein
          7    6.5   8.0         12    5.8   0.9    2.5  2  PF14015.1  Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   6.8   1.5e-08   2.9e-05       2     160 ..      39     192 ..      38     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.5e-08
  PF01545.16   2 iialllnlllalvelivglltnSlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliep.heidapeialgvalisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaall 160
                 +++l+++++  +++++ ++ t S++ l   + +++d+ ++v++l  +  a++    +    l   e  +    s+++++l++ +++++i+ l++  ++++  e++++    s+ +++ll l   ++gr  +  s++l+ +++ +l+ al+s+gvl++a++
  MMETSP0890-20130614|2139_1  39 VVSLIASFIAIVMGAVSSFQTRSSTALGYCLENTVDFCGSVVLLWRFAGANS---YESKQALDSREQRADAGISIMFVVLGGVVFIDAIKGLMNRtADRELLELIAL-YSPSVFIFVLLGLAKVHVGRAVK--SQSLQKDGTCSLAGALLSAGVLISAII 192
                 689*****************************************99999999...5555569********************************9777777777666.77777777777777777778777..*************************98 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   4.8e-06    0.0093      61     164 ..      25     121 ..       2     125 .. 0.64
   2 ?    0.2   0.1      0.24   4.6e+02      67      99 ..     143     179 ..     129     193 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.8e-06
   PF13903.1  61 atalldltrvvivflllglvlillaavlallaslkksktlllltgvllllagilillavvlyvqkvqleikrnvqtwqselqnnvlaslgwSfylvvvgivlvl 164
                 +++++ l++++  + + +l+++++a+v++ ++s+ +++   +++g++l  ++ ++   v+l+     +    +++  q  ++ +++a  g S+++vv+g v+ +
  MMETSP0890-20130614|2139_1  25 KPWNPSLQDAYE-LSVVSLIASFIAIVMGAVSSFQTRSS--TALGYCLENTVDFCGSVVLLWRFAGAN----SYESKQALDSREQRADAGISIMFVVLGGVVFI 121
                 355555555555.55568888888888888888876664..466667776666655555555555543....34445555566789**************9976 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.24
   PF13903.1  67 ltrvvivflllglvlillaavlallaslkksk....t 99 
                 +  +v +f+llgl+ + ++  +++ ++ k        
  MMETSP0890-20130614|2139_1 143 YSPSVFIFVLLGLAKVHVGRAVKSQSLQKDGTcslaG 179
                 5667888888888888777777766665555423322 PP

>> PF09605.5  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   4.2e-06    0.0082      81     149 ..      37     107 ..      32     129 .. 0.72
   2 ?   -0.4   0.4      0.36     7e+02      50      50 ..     150     150 ..     107     192 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.2e-06
   PF09605.5  81 llilsiilgliadliaklgkykskkknllsyvvfslglv.gpllplllakesyl.asliakgmsaeyidel 149
                 l ++s+i ++ia +  ++++++++ ++ l+y++  ++ + g+++ l+ ++ +   +s +a +  ++ +d+ 
  MMETSP0890-20130614|2139_1  37 LSVVSLIASFIAIVMGAVSSFQTRSSTALGYCLENTVDFcGSVVLLWRFAGANSyESKQALDSREQRADAG 107
                 578999*******999******************999999*******887655423444444444444433 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.36
   PF09605.5  50 L 50 
                 +
  MMETSP0890-20130614|2139_1 150 F 150
                 2 PP

>> PF06930.7  Protein of unknown function (DUF1282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.27   5.4e+02     104     119 ..      39      53 ..      16      84 .. 0.52
   2 ?    9.0   1.0   0.00046       0.9      48     116 ..      90     156 ..      34     161 .. 0.72
   3 ?    4.7   0.1    0.0098        19      29      82 ..     139     192 ..     136     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.27
   PF06930.7 104 aytltplflggialli 119
                 +++l+  f+ +i+ ++
  MMETSP0890-20130614|2139_1  39 VVSLIASFI-AIVMGA 53 
                 222221111.222222 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00046
   PF06930.7  48 kifkgqgaqkltlasalvisvagalaggvfllaylikligrifggttsykevlafaaytltplflggia 116
                 +  ++q++++ ++++   is++++++ggv+++ ++  l+ r+  ++ ++ e++a+++ + ++ +l+g+a
  MMETSP0890-20130614|2139_1  90 SYESKQALDSREQRADAGISIMFVVLGGVVFIDAIKGLMNRT--ADRELLELIALYSPSVFIFVLLGLA 156
                 233344478888999999*********999999999999999..7888777888888888888888877 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0098
   PF06930.7  29 llllipvvvfvistlqllskifkgqgaqkltlasalvisvagalag.gvfllayl 82 
                 l++l +++vf++++l  l k+  g+++++ +l+    +s+agal+  gv++ a +
  MMETSP0890-20130614|2139_1 139 LIALYSPSVFIFVLL-GLAKVHVGRAVKSQSLQKDGTCSLAGALLSaGVLISAII 192
                 567888999999999.788888888899999***99*******999999999987 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   9.4e-05      0.18      10     102 ..      38     167 ..      36     179 .. 0.83
   2 ?    1.5   0.1     0.069   1.3e+02      11      56 ..     148     188 ..     141     192 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.4e-05
  PF00335.15  10 nllfllvGlallgvgvwlk...................................vsldllaeasnssksavilliiviGviililgilGcig..alkeskcllliyailllllflaelalailafvlrsq 102
                 +++ l+++++ +++g++                                      s++ l++ ++   + ++++++v+G++++i +i G +   a++e   l+++y+  ++++ l+ la + ++ +++sq
  MMETSP0890-20130614|2139_1  38 SVVSLIASFIAIVMGAVSSfqtrsstalgyclentvdfcgsvvllwrfagansyESKQALDSREQRADAGISIMFVVLGGVVFIDAIKGLMNrtADRELLELIALYSPSVFIFVLLGLAKVHVGRAVKSQ 167
                 6788888888888888883446788899999999999999999999999999999999999999999*****************9****98766889999999999998888888888877777666666 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.069
  PF00335.15  11 llfllvGlallgvgvwlk.vsldllaeasnssksavilliiviGvii 56 
                 ++f+l+Gla + vg  +k +sl+++++       ++  ++++ Gv+i
  MMETSP0890-20130614|2139_1 148 FIFVLLGLAKVHVGRAVKsQSLQKDGTC------SLAGALLSAGVLI 188
                 8999*****9999999963555555444......2222333234333 PP

>> PF03511.9  Fanconi anaemia group A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0007       1.4       5      39 ..      42      79 ..      39      82 .. 0.79
   2 ?    0.9   0.0      0.19   3.6e+02       8      22 ..     147     161 ..     135     178 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0007
   PF03511.9  5 lvalfffslmGllssyltsrdta...ellkavdvCaev 39
                l+a f   +mG +ss+ t+ +ta    l  +vd C  v
  MMETSP0890-20130614|2139_1 42 LIASFIAIVMGAVSSFQTRSSTAlgyCLENTVDFCGSV 79
                79999999**************9332355677777665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.19
   PF03511.9   8 lfffslmGllssylt 22 
                 +f f l+Gl   ++ 
  MMETSP0890-20130614|2139_1 147 VFIFVLLGLAKVHVG 161
                 6999****9888875 PP

>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4      0.02        39      19      42 ..      35      58 ..      20      88 .. 0.66
   2 ?    5.8   0.9    0.0062        12      25      73 ..     109     197 ..     106     198 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.02
   PF14015.1 19 nllriitiilgvlaavvpilvsln 42
                + l ++++i++++a+v+ ++ s++
  MMETSP0890-20130614|2139_1 35 YELSVVSLIASFIAIVMGAVSSFQ 58
                444555555555555555533333 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0062
   PF14015.1  25 tiilgvlaavvpi....................lvslnsl....................gagsnwlkwvtvilsalvailaslatffk 73 
                 +i+ +vl++vv i                    l+s++++                     ++    +++ ++lsa v+i+a ++ + +
  MMETSP0890-20130614|2139_1 109 SIMFVVLGGVVFIdaikglmnrtadrelleliaLYSPSVFifvllglakvhvgravksqsLQKDGTCSLAGALLSAGVLISAIIEKYSH 197
                 677777777777777777777777777766655333333355555555555555555444336667899999***********998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       551  (0.0403013); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.84
# Mc/sec: 567.71
//
Query:       MMETSP0890-20130614|2144_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-22   77.3  20.0    3.9e-06   26.4   0.5    7.1  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.057   12.9   3.3        3.1    7.4   0.0    3.8  4  PF07676.7  WD40-like Beta Propeller Repeat
      0.089   12.9   0.0        8.3    6.7   0.0    3.0  2  PF13570.1  YWTD domain
       0.61    9.3   8.6        4.6    6.5   0.0    4.4  5  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.3     1e+03      26      39 .]       2      15 ..       1      15 [. 0.92
   2 !    6.6   0.1     0.002       6.9      11      29 ..      35      53 ..      30      54 .. 0.90
   3 !   26.4   0.5   1.1e-09   3.9e-06       5      39 .]      83     118 ..      80     118 .. 0.95
   4 !    9.5   0.1   0.00024      0.83      15      38 ..     148     171 ..     139     172 .. 0.82
   5 !   22.8   0.1   1.6e-08   5.3e-05      12      39 .]     200     227 ..     194     227 .. 0.94
   6 !   14.5   0.0   6.6e-06     0.022      18      36 ..     255     273 ..     252     276 .. 0.87
   7 !    5.8   0.0    0.0035        12      14      37 ..     311     334 ..     309     334 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.3
                EEEEETTSEEEEEE CS
  PF00400.27 26 lasgSrDgtirlWd 39
                la+g + g i+l+d
  MMETSP0890-20130614|2144_1  2 LATGTATGIIKLYD 15
                9***********98 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.002
                SSSEEEEEEESSSTEEEEE CS
  PF00400.27 11 tspVtcvafspdgpllasg 29
                +++V +++fsp+g +++s+
  MMETSP0890-20130614|2144_1 35 SHAVVALSFSPSGDRFLSC 53
                699*************998 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 1.1e-09
                 EEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 a  +gHt +Vt  a+ p+   ++as++ Dg++rlWd
  MMETSP0890-20130614|2144_1  83 AHTTGHTTSVTGGAWQPNqNYRCASCGIDGSVRLWD 118
                 6789*******************************9 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00024
                 EEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtirlW 38 
                 t++ fs dg  ++ + +Dg++ lW
  MMETSP0890-20130614|2144_1 148 TAMTFSADGGTICASASDGSLQLW 171
                 8999****7777777777****** PP

  == domain 5    score: 22.8 bits;  conditional E-value: 1.6e-08
                 SSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgSrDgtirlWd 39 
                 s ++cvafspdg++l s  +Dg ++lWd
  MMETSP0890-20130614|2144_1 200 SVISCVAFSPDGHILGSRADDGRLKLWD 227
                 679************************9 PP

  == domain 6    score: 14.5 bits;  conditional E-value: 6.6e-06
                 EEESSSTEEEEEETTSEEE CS
  PF00400.27  18 afspdgpllasgSrDgtir 36 
                  fspdg++++ gS+Dg++ 
  MMETSP0890-20130614|2144_1 255 TFSPDGQYIIAGSDDGNLE 273
                 69**************975 PP

  == domain 7    score: 5.8 bits;  conditional E-value: 0.0035
                 EEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27  14 VtcvafspdgpllasgSrDgtirl 37 
                 V+ v ++p  + +++++ +g+ r+
  MMETSP0890-20130614|2144_1 311 VSYVEWHPRLQQIVCACTNGSARI 334
                 8889*****************997 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.5   5.1e+03      15      23 ..      42      50 ..      42      51 .. 0.84
   2 ?    1.7   0.0     0.055   1.9e+02      15      38 ..     151     171 ..     141     172 .. 0.72
   3 ?    1.7   0.0     0.054   1.9e+02      13      20 ..     204     211 ..     194     226 .. 0.83
   4 ?    7.4   0.0   0.00091       3.1      13      24 ..     253     264 ..     252     270 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.5
                EE-----EE CS
   PF07676.7 15 awSPDGkki 23
                ++SP G ++
  MMETSP0890-20130614|2144_1 42 SFSPSGDRF 50
                79***9885 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.055
                 EE-----EEEEEE-BT..TB-EEE CS
   PF07676.7  15 awSPDGkkivFtSnRgdrGspdiy 38 
                 ++S DG  +  + + + +Gs +++
  MMETSP0890-20130614|2144_1 151 TFSADG--GTICASAS-DGSLQLW 171
                 899999..55566555.6888887 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.054
                 EEEE---- CS
   PF07676.7  13 ePawSPDG 20 
                 + a+SPDG
  MMETSP0890-20130614|2144_1 204 CVAFSPDG 211
                 569****9 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.00091
                 EEEE-----EEE CS
   PF07676.7  13 ePawSPDGkkiv 24 
                 ++++SPDG++i+
  MMETSP0890-20130614|2144_1 253 NFTFSPDGQYII 264
                 579*******96 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.045   1.5e+02      18      33 ..     153     168 ..     137     169 .. 0.82
   2 ?    6.7   0.0    0.0024       8.3      18      38 ..     257     277 ..     230     278 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.045
   PF13570.1  18 avdgglvyvgtgdGrl 33 
                 ++dgg++ ++++dG+l
  MMETSP0890-20130614|2144_1 153 SADGGTICASASDGSL 168
                 789***********87 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0024
   PF13570.1  18 avdgglvyvgtgdGrlyAlDa 38 
                 + dg ++ +g+ dG+l ++D+
  MMETSP0890-20130614|2144_1 257 SPDGQYIIAGSDDGNLECFDI 277
                 56899**************95 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.7      0.72   2.4e+03       8      12 ..      43      47 ..      42      48 .. 0.90
   2 ?   -1.8   0.0      0.52   1.8e+03       7      14 ..      61      68 ..      60      69 .. 0.84
   3 ?   -0.4   0.0      0.19   6.4e+02       7      12 ..     151     156 ..     148     156 .. 0.87
   4 ?    6.5   0.0    0.0013       4.6       8      15 ..     207     214 ..     203     214 .. 0.81
   5 ?    4.5   0.2    0.0056        19       7      12 ..     255     260 ..     252     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.72
                ----- CS
   PF10584.4  8 FSPdG 12
                FSP G
  MMETSP0890-20130614|2144_1 43 FSPSG 47
                ***99 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.52
                -------- CS
   PF10584.4  7 tFSPdGRL 14
                +F  dGR 
  MMETSP0890-20130614|2144_1 61 IFDRDGRQ 68
                7999**95 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.19
                 ------ CS
   PF10584.4   7 tFSPdG 12 
                 tFS dG
  MMETSP0890-20130614|2144_1 151 TFSADG 156
                 9****9 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0013
                 -------H CS
   PF10584.4   8 FSPdGRLf 15 
                 FSPdG+++
  MMETSP0890-20130614|2144_1 207 FSPDGHIL 214
                 ******95 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.0056
                 ------ CS
   PF10584.4   7 tFSPdG 12 
                 tFSPdG
  MMETSP0890-20130614|2144_1 255 TFSPDG 260
                 9***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.83
# Mc/sec: 1466.69
//
Query:       MMETSP0890-20130614|2138_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38   10.4   2.5       0.99    9.1   1.7    1.6  1  PF09527.5 Putative F0F1-ATPase subunit (ATPase_gene1)


Domain annotation for each model (and alignments):
>> PF09527.5  Putative F0F1-ATPase subunit (ATPase_gene1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.7   7.2e-05      0.99      20      52 ..      31      61 ..      31      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 7.2e-05
   PF09527.5 20 lGywLDkwlgtspwftliglllGiaaGfynvyr 52
                lG w+  +++ + w+tl+   lG + Gfyn+++
  MMETSP0890-20130614|2138_1 31 LGNWAGTFWEDKVWGTLAK--LGAVYGFYNLIK 61
                7999999999999999997..9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 426.85
//
Query:       MMETSP0890-20130614|2151_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   86.9   0.0    1.5e-24   86.7   0.0    1.0  1  PF01451.16 Low molecular weight phosphotyrosine protein phosphatase
  ------ inclusion threshold ------
       0.43   10.3   3.2        0.6    9.9   0.7    2.1  2  PF07102.7  Protein of unknown function (DUF1364)


Domain annotation for each model (and alignments):
>> PF01451.16  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   2.2e-28   1.5e-24       1     137 [.      12     142 ..      12     143 .. 0.86

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 2.2e-28
                 EEEEESSSTSHHHHHHHHHHHHHHHTHGCCEEEEEEEETST.TSS-THHHHHHHHHTTS-GTTS--SBGGHHHHHCSSEEEESSHHHHHHHHHHHCTEEEGCEEECCCEEE---GC...SSHHHHHHHHHHHHHHHHHHH CS
  PF01451.16   1 vlfvCtgNicRSpmAeallrallekalgdkvevdSAGtealvgesvdpravevlkekgidisghrarqlseeelkefDliltldeeaarelcpvapekkeakvvllgeqwdipDPy...gkeeeefeevrdeieervkkl 137
                 v+f+C +N+cRS+mAe++lr+l   +  +++ v SAG+    g+ ++p a+ v++e g+di++++++ + +++ ++fD ++  ++   +     ++ k++  +  +  +w+++DP     ++ +++++vrde++  +++l
  MMETSP0890-20130614|2151_1  12 VMFLCNHNSCRSQMAEGWLRSL---RGDKSIGVASAGIV--GGTAIKPGAITVMSEAGVDITNQTSDAMADFKPDDFDCVISCCGCGSKLDGDKEVWKQR--TYFF--DWGLDDPPaidPGDLSAYRRVRDECKAKCEEL 142
                 89********************...445799********..9*****************************************77666444444444222..3344..9******9666677***************998 PP

>> PF07102.7  Protein of unknown function (DUF1364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.069   4.7e+02       9      32 ..       4      27 ..       1      60 [. 0.67
   2 ?    9.9   0.7   8.7e-05       0.6      42      70 ..      77     105 ..      56     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.069
   PF07102.7  9 rGeeCtlripgvCngnpettvlah 32
                 G + + +++ +Cn+n   + +a 
  MMETSP0890-20130614|2151_1  4 YGADYKKNVMFLCNHNSCRSQMAE 27
                555556667777888876666665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 8.7e-05
   PF07102.7  42 gikpdDllaafaCsachdaiDgrkkklsr 70 
                   kpdD+  +++C +c + +Dg k+ +++
  MMETSP0890-20130614|2151_1  77 DFKPDDFDCVISCCGCGSKLDGDKEVWKQ 105
                 579*******************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 566.76
//
Query:       MMETSP0890-20130614|2140_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00055   19.4   0.0    0.00062   19.3   0.0    1.3  1  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
       0.19   12.2   2.1        1.9    9.0   0.2    2.0  2  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.1e-08   0.00062      18      61 ..      13      56 ..       2      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9.1e-08
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlclleyfpvellnk 61
                a ++f+++a a  ++Ld+++p++l n+ w+++ +    ++l+n+
  MMETSP0890-20130614|2140_1 13 APALFNAIADAALTKLDGFKPQELANTTWAFATASVEAPALFNA 56
                6789***************************9987766666665 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00028       1.9       6      34 ..       1      29 [.       1      37 [. 0.93
   2 ?    3.5   0.1     0.015   1.1e+02       7      33 ..      39      65 .]      33      65 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00028
   PF13513.1  6 aAawaLGrlaggeprllepavpellpaLl 34
                +Aawa++++ +++p l + + +++l +L 
  MMETSP0890-20130614|2140_1  1 NAAWAFATASVEAPALFNAIADAALTKLD 29
                59**********************99997 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.015
   PF13513.1  7 AawaLGrlaggeprllepavpellpaL 33
                  wa++++ +++p l + + +++l +L
  MMETSP0890-20130614|2140_1 39 TTWAFATASVEAPALFNAIADAALTKL 65
                679999999999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                      109  (0.0079725); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.96
# Mc/sec: 162.25
//
Query:       MMETSP0890-20130614|2152_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-10   39.2   0.0    4.2e-10   39.0   0.0    1.1  1  PF00400.27 WD domain, G-beta repeat
     0.0031   15.6   0.1     0.0031   15.6   0.1    1.1  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   6.1e-14   4.2e-10       1      39 []       5      44 ..       5      44 .. 0.98

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 6.1e-14
                TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                gec++tl++  ++V+ va+sp+  + la+g +D+++r+W+
  MMETSP0890-20130614|2152_1  5 GECLKTLEHSGATVCTVAWSPSnETQLATGAADNKLRIWN 44
                79*************************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.6e-07    0.0031     229     253 ..      26      50 ..       7      53 .] 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.6e-07
   PF11715.3 229 egqtfvftlsrDgkLRvWnletgqc 253
                 +++t ++t  +D+kLR+Wn++t+ c
  MMETSP0890-20130614|2152_1  26 SNETQLATGAADNKLRIWNTDTNEC 50 
                 4677788999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:02.71
# Mc/sec: 46.87
//
Query:       MMETSP0890-20130614|2153_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.5   3.7       0.15   10.0   2.5    1.2  1  PF05510.8 Sarcoglycan alpha/epsilon


Domain annotation for each model (and alignments):
>> PF05510.8  Sarcoglycan alpha/epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.5   1.1e-05      0.15     326     396 ..      66     138 ..      56     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.1e-05
   PF05510.8 326 reglkkrdsrtsdsqlvhhssiskstkkLreladqrevlrplstlkslkp..tgerspppsekradstsmpll 396
                 ++  ++++ r  ++ ++  ssi++st++  + ++ ++  r ls+++s ++  t + ++ +s++r  s+s+p++
  MMETSP0890-20130614|2153_1  66 HDSYQHQERRKIRIRTKIKSSIHSSTEREHDFSKRNNFSRHLSATPSQHQnhTPTSEKSNSSQRHSSASTPSQ 138
                 6666677778889999999****************************99865557777788899999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1264  (0.0924517); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:01.05
# Mc/sec: 362.88
//
Query:       MMETSP0890-20130614|2160_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00012   21.6   0.3    0.00018   21.1   0.2    1.3  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.014   14.2   0.0      0.014   14.2   0.0    1.0  1  PF01766.12 Birnavirus VP2 protein
      0.056   13.8   0.1      0.059   13.7   0.0    1.1  1  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2     4e-08   0.00018       2      30 ..      43      71 .]      42      71 .] 0.94

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4e-08
                EEEEEEESSSSSEEEEEEESSSTEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgS 30
                  ++t ++H+s++ cva+s d++++a++S
  MMETSP0890-20130614|2160_1 43 SSLRTVEAHNSSIACVAYSFDSSMIATAS 71
                57899***********************9 PP

>> PF01766.12  Birnavirus VP2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.1e-06     0.014      21      82 ..       6      69 ..       1      71 [] 0.72

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.1e-06
  PF01766.12 21 iPDDilerhvlkaetstynLkvgdsGsGLivvfPnaPssi...vGahytldsngsnlkfDq.alkt 82
                +  +i++rhv k +  t+ L v  + sG++ ++ ++ +s    v ah    +    + fD  ++ t
  MMETSP0890-20130614|2160_1  6 VLAEIVDRHVEKRQSRTQELAVV-TISGILLIYDSSTGSSlrtVEAHNSSIACV-AYSFDSsMIAT 69
                56689***************985.6799999**998887512245565554444.89999624555 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.059      62      97 ..      18      53 ..       2      67 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
   PF08477.8 62 elkkehelllkkadaillvydltdeesleevsella 97
                + ++++el++ + ++ill+yd+++++sl +v++  +
  MMETSP0890-20130614|2160_1 18 RQSRTQELAVVTISGILLIYDSSTGSSLRTVEAHNS 53
                333444555999******************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.80
# Mc/sec: 212.68
//
Query:       MMETSP0890-20130614|2159_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-27   94.3   0.6    1.1e-14   53.6   0.0    2.2  2  PF13374.1  Tetratricopeptide repeat
    3.2e-21   74.9   0.6      2e-20   72.3   0.4    1.9  1  PF13424.1  Tetratricopeptide repeat
    1.6e-12   46.7   5.6    2.7e-08   33.2   0.8    1.8  2  PF13414.1  TPR repeat
    1.2e-09   37.2   2.3    6.3e-05   22.2   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    3.1e-08   32.6   0.0      0.001   18.6   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    2.5e-07   29.9   2.8    0.00058   19.4   0.2    2.1  2  PF07719.12 Tetratricopeptide repeat
    6.8e-05   22.6   0.9       0.25   11.5   0.1    2.4  2  PF13431.1  Tetratricopeptide repeat
    8.7e-05   22.9   1.6     0.0079   16.7   0.3    2.0  2  PF13432.1  Tetratricopeptide repeat
     0.0064   16.9   1.6       0.79   10.4   0.1    2.2  2  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.0   1.2        4.4    7.6   0.0    2.5  3  PF14357.1  Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.1   2.6e-13   3.6e-10       1      42 []       6      47 ..       6      47 .. 0.98
   2 !   53.6   0.0   7.8e-18   1.1e-14       1      42 []      48      89 ..      48      89 .. 0.98

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 2.6e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a aln+LA +l  +g +++A +l+e++l ir++ +G++HPd
  MMETSP0890-20130614|2159_1  6 VAKALNDLASLLDLQGIHDQAKQLHERSLRIRQEKVGPNHPD 47
                799**************************************8 PP

  == domain 2    score: 53.6 bits;  conditional E-value: 7.8e-18
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a +lnnLA +l+++ +y+eA +l+e+a +i+++++G++HP+
  MMETSP0890-20130614|2159_1 48 VAESLNNLAGLLQQQAKYDEAKPLFERAHEIWEKVHGPNHPN 89
                79***************************************5 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.4   1.5e-23     2e-20       1      78 []       3      81 ..       3      81 .. 0.98

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 1.5e-23
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hp +a++ln la +l  +g +d+A +l e++l + ++++g++hpd+a +lnnla l++++ +ydeA++++e+A+ei ek
  MMETSP0890-20130614|2159_1  3 HPKVAKALNDLASLLDLQGIHDQAKQLHERSLRIrQEKVGPNHPDVAESLNNLAGLLQQQAKYDEAKPLFERAHEIWEK 81
                899*******************************999**************************************9876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.8     2e-11   2.7e-08       2      67 ..       6      78 ..       5      80 .. 0.88
   2 !   21.4   0.1   9.1e-08   0.00012       2      38 ..      48      89 ..      47      90 .] 0.90

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2e-11
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67
                +A+al+ l+  l  +g +d+A ++ e++l+++        p+ ae ++nlA +++++  +y+eA   +e+A+e+
  MMETSP0890-20130614|2159_1  6 VAKALNDLASLLDLQGIHDQAKQLHERSLRIRqekvgpnhPDVAESLNNLAGLLQQQA-KYDEAKPLFERAHEI 78
                79*****************************77777733355566************9.6***********987 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 9.1e-08
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae 38
                +Ae+l++l+  l ++ +ydeA  ++e+A e++     pn+++
  MMETSP0890-20130614|2159_1 48 VAESLNNLAGLLQQQAKYDEAKPLFERAHEIWekvhgPNHPN 89
                79*****************************87777788886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.8e-06     0.011       1      32 [.       7      38 ..       7      40 .. 0.95
   2 !   22.2   0.2   4.6e-08   6.3e-05       1      30 [.      49      78 ..      49      81 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.8e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                akal+ l+ ++  +g +d+A +  e+ L+++ 
  MMETSP0890-20130614|2159_1  7 AKALNDLASLLDLQGIHDQAKQLHERSLRIRQ 38
                89**************************9975 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 4.6e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a++l+nl+ +++++ kydeA   +e+A e+
  MMETSP0890-20130614|2159_1 49 AESLNNLAGLLQQQAKYDEAKPLFERAHEI 78
                799************************998 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.5e-05     0.088       1      30 [.       9      38 ..       9      47 .. 0.90
   2 !   18.6   0.0   7.4e-07     0.001       1      25 [.      51      75 ..      51      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.5e-05
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                al+ La+l   +g +++A +l+er+L++++
  MMETSP0890-20130614|2159_1  9 ALNDLASLLDLQGIHDQAKQLHERSLRIRQ 38
                7999********************998875 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 7.4e-07
   PF13176.1  1 allnLarlysrlgdyekAielyera 25
                +l+nLa l +++ +y++A  l+era
  MMETSP0890-20130614|2159_1 51 SLNNLAGLLQQQAKYDEAKPLFERA 75
                79**********************4 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1    0.0002      0.27       1      30 [.       7      36 ..       7      39 .. 0.94
   2 !   19.4   0.2   4.3e-07   0.00058       1      30 [.      49      78 ..      49      78 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0002
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+al+ l+ ++  +g +++A+++ e++l++
  MMETSP0890-20130614|2159_1  7 AKALNDLASLLDLQGIHDQAKQLHERSLRI 36
                799*************************98 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4.3e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                ae l+nl+ ++ ++ +y+eA+ +fe+A e+
  MMETSP0890-20130614|2159_1 49 AESLNNLAGLLQQQAKYDEAKPLFERAHEI 78
                799************************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00079       1.1       9      34 .]       3      28 ..       2      28 .. 0.92
   2 !   11.5   0.1   0.00018      0.25       9      33 ..      45      69 ..      43      70 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00079
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAeq 34
                +P+ a a+n LA ll  +G +++A+q
  MMETSP0890-20130614|2159_1  3 HPKVAKALNDLASLLDLQGIHDQAKQ 28
                68889**************9999987 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00018
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a+++nnLA ll+ + +++eA+
  MMETSP0890-20130614|2159_1 45 HPDVAESLNNLAGLLQQQAKYDEAK 69
                8999*******************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0023       3.1      27      60 ..       3      36 ..       1      46 [. 0.83
   2 !   16.7   0.3   5.8e-06    0.0079      15      59 ..      25      77 ..      24      88 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraalal 60
                +P+ a al  la +l  +g +d+A +l ++ l++
  MMETSP0890-20130614|2159_1  3 HPKVAKALNDLASLLDLQGIHDQAKQLHERSLRI 36
                58999********************999999943 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 5.8e-06
   PF13432.1 15 eAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59
                +A +++e+ l+          P+ ae l +la +l ++ ++deA  l+++a +
  MMETSP0890-20130614|2159_1 25 QAKQLHERSLRIRqekvgpnhPDVAESLNNLAGLLQQQAKYDEAKPLFERAHE 77
                6666665555555577777789***********************99999984 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0099        14       2      35 ..       8      46 ..       7      53 .. 0.77
   2 !   10.4   0.1   0.00058      0.79       4      30 ..      52      78 ..      49      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0099
   PF13428.1  2 eallalarallalGdpdeAiallrrala.....laPdda 35
                +al +la +l  +G +d+A +l +r l+      +P+++
  MMETSP0890-20130614|2159_1  8 KALNDLASLLDLQGIHDQAKQLHERSLRirqekVGPNHP 46
                68999********************99744333345555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00058
   PF13428.1  4 llalarallalGdpdeAiallrralal 30
                l  la +l ++  +deA  l++ra + 
  MMETSP0890-20130614|2159_1 52 LNNLAGLLQQQAKYDEAKPLFERAHEI 78
                6789********************874 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0032       4.4      65      84 ..       2      21 ..       1      22 [. 0.86
   2 ?    7.4   0.2    0.0039       5.3      50      82 ..      28      61 ..      16      62 .. 0.71
   3 ?    0.1   0.0      0.73   9.9e+02      39      62 ..      60      82 ..      54      89 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0032
   PF14357.1 65 eHPklagtlrnildsLanmG 84
                +HPk+a++l++++  L   G
  MMETSP0890-20130614|2159_1  2 DHPKVAKALNDLASLLDLQG 21
                8************9997655 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0039
   PF14357.1 50 slaerlne.averFeaeHPklagtlrnildsLan 82
                +l er  +   e+   +HP++a+ l+n++  L++
  MMETSP0890-20130614|2159_1 28 QLHERSLRiRQEKVGPNHPDVAESLNNLAGLLQQ 61
                44444333356778889***********999975 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.73
   PF14357.1 39 eeedaseaedeslaerlneaverF 62
                + ++a+ +e ++l er +e+ e+ 
  MMETSP0890-20130614|2159_1 60 Q-QQAKYDEAKPLFERAHEIWEKV 82
                3.4777777778888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.63
# Mc/sec: 342.34
//
Query:       MMETSP0890-20130614|2158_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   63.6   0.0    2.7e-17   62.4   0.0    1.5  1  PF01764.20 Lipase (class 3)
    6.7e-07   29.0  19.6    1.3e-06   28.0   2.8    2.9  2  PF01363.16 FYVE zinc finger
     0.0022   17.3   0.0       0.51    9.6   0.0    2.3  2  PF03959.8  Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0     6e-21   2.7e-17       1     138 [.     365     514 ..     365     517 .. 0.81

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 6e-21
                 EEEEE-E-SHHHHHHHHHHTECCCTTCGGSTT-EEE---HHHHH..................HHHHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHHHHHHT-.....TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S CS
  PF01764.20   1 vvafRGtetaeewltdldislvevdellekeggkvhkgfleayk..................sareqvlkelkrllekypdykivvtGHSLGGalAlLaaadlaenglnk..sslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlp 138
                 v+a+RG+ t+++wl + d ++ ++   ++k  + vh g+ ++                         ++  lkrl +k+  ++i  tGHSLG+++A++++a l+++ +++    +v+++++++P   + ++a+l+        v++vv+++D++prl 
  MMETSP0890-20130614|2158_1 365 VLAIRGSATRSDWLVNTDSEPLPIFGDKNK-TYWVHGGMRTLSIfisysilylgmlkaaralLDDCGLRVCLKRLANKN--FSIDTTGHSLGAGVATVITALLMNEHRETkfPAPVKCIAYAAPASVDADLAHLLL---GS--VVSVVHHDDLIPRLS 514
                 789*********************988775.555555554444466666777777766664333335677777776655..7*******************9999887778899*********************9...45..99***********86 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   5.3    0.0033        15      10      64 ..       8      74 ..       3      82 .. 0.63
   2 !   28.0   2.8   2.9e-10   1.3e-06      24      64 ..     700     756 ..     672     760 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0033
  PF01363.16 10 kkCeiCakkFsltrrrhhCrlCGkvvCskCsskrvekl............eeeaaeekevrvCk.eCl 64
                + C  Ca+ F        C +C + +Cs C+ k+++              +e++ + + v vCk eC 
  MMETSP0890-20130614|2158_1  8 EPCGRCAAMFL-PLSLSTCPACMRRICSGCIIKTSAEAesldprrskkesKEDTTTASIVSVCKeECA 74
                679*******4.468899*************6666555455554443322222333333366642344 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 2.9e-10
  PF01363.16  24 rrhhCrlCGkvvCskCs..................skrvekleeeaaeekevrvCkeCl 64 
                   hhCr+CG+vvC+ C                   + r++   ++ +  + vrvC+ C 
  MMETSP0890-20130614|2158_1 700 ATHHCRACGQVVCAFCApaadeiagdgigqkqtlpDLRIS--LPSFGYFEAVRVCRPCA 756
                 57***************66666666666654444444443..4588888999******6 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00011      0.51       7      80 ..     150     233 ..     145     249 .. 0.77
   2 !    5.1   0.0    0.0026        12     107     146 ..     448     487 ..     429     513 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00011
   PF03959.8   7 iLcLhGytqsgeiFraktsalrkllkklnvelvyldapvel.eekadlpkseseeee.....kseeeeeyraWfrkkde....s 80 
                 +Lc  G t  + +++ +t+ l++ ++    +  +++ p e  ++ +++++se+e+++      +++++++ +W+++  e     
  MMETSP0890-20130614|2158_1 150 LLCVEGCTIASLVLSPQTKILCERVMPILRRHFFVTNPSEStAQDQEISQSEEEKDDsettpPANSNSNTSSWWQSTREalstR 233
                 79*************************66666677777766266666776666666699998888999999****998755541 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0026
   PF03959.8 107 iGFSqGaalaallaslleellkeakhpklkfailvsGfkl 146
                  G S Ga +a+++++ll + ++e+k p    +i++++ ++
  MMETSP0890-20130614|2158_1 448 TGHSLGAGVATVITALLMNEHRETKFPAPVKCIAYAAPAS 487
                 599***************9999999998888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.18u 0.40s 00:00:01.58 Elapsed: 00:00:01.60
# Mc/sec: 1141.27
//
Query:       MMETSP0890-20130614|2171_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-21   76.0   0.4    1.6e-21   75.9   0.3    1.0  1  PF13424.1  Tetratricopeptide repeat
    6.9e-17   60.6   1.3    9.8e-08   31.5   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.1e-12   46.6   1.4      2e-05   23.9   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.4e-09   36.9   5.7    0.00019   20.9   0.2    2.1  2  PF07719.12 Tetratricopeptide repeat
      6e-08   32.1   1.2    1.3e-07   31.0   0.7    1.6  1  PF13414.1  TPR repeat
    1.6e-07   30.4   5.5    5.8e-05   22.4   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    5.7e-07   29.5   3.1      0.023   15.1   0.5    2.1  2  PF13428.1  Tetratricopeptide repeat
    8.9e-07   28.1   1.8     0.0019   17.7   0.2    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.1e-05   25.8   4.0    3.9e-05   24.0   2.8    1.7  1  PF13432.1  Tetratricopeptide repeat
    3.6e-05   23.6   0.3      0.065   13.5   0.1    2.5  2  PF07721.9  Tetratricopeptide repeat
    0.00047   20.0   2.9     0.0055   16.6   0.1    2.6  3  PF13431.1  Tetratricopeptide repeat
     0.0014   17.5   0.0      0.094   11.5   0.0    2.0  2  PF04910.9  Transcriptional repressor TCF25
     0.0053   17.0   1.2        2.9    8.4   0.1    2.3  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   14.1   0.1      0.034   13.9   0.1    1.2  1  PF11846.3  Domain of unknown function (DUF3366)
      0.084   12.0   0.5       0.16   11.1   0.2    1.6  2  PF10516.4  SHNi-TPR


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.3   1.7e-24   1.6e-21       8      77 ..       3      73 ..       1      74 [. 0.97

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 1.7e-24
   PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                l nla++lr +g yd+A  +ye al+l  +++g+dhp +a+ ln+la+l+  +g+yd+A++++e+Al+i++
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLfEEKFGPDHPKVATPLNDLAELLDLQGNYDQAKQLHERALRIRQ 73
                56*************************999***************************************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.1e-10   9.8e-08       5      41 ..       3      39 ..       3      40 .. 0.97
   2 !   28.5   0.2   9.5e-10   8.7e-07       5      34 ..      45      74 ..      41      79 .] 0.91

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.1e-10
   PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHP 41
                l nLA +lr++g y++A +++e al + ++ +G+dHP
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLFEEKFGPDHP 39
                56**********************************9 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 9.5e-10
   PF13374.1  5 lnnLAlalrargryeeAlaleeealairrr 34
                ln+LA +l  +g+y++A +l+e+al ir++
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQE 74
                8***************************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.1e-08     2e-05       2      31 ..       3      32 ..       3      37 .. 0.87
   2 !   21.9   0.3   9.5e-08   8.6e-05       2      34 ..      45      77 ..      45      79 .] 0.89

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 2.1e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkd 31
                llnLa l +++g+y+kA  +ye aL+l ++
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLFEE 32
                89*********************8876555 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 9.5e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                l+ La+l   +g+y++A +l+eraL+++++ l+
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQENLG 77
                678********************9998887765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6     9e-07   0.00082       4      32 ..       3      31 ..       2      33 .. 0.92
   2 !   20.9   0.2   2.1e-07   0.00019       4      33 ..      45      74 ..      42      75 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 9e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleldP 32
                l nl+ +++ +g y++A+ ++e Al+l+ 
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLFE 31
                579999********************986 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 2.1e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleldPn 33
                l+ l++++  +g+y++A+++ e+Al++  +
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQE 74
                789***********************9765 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.7   1.4e-10   1.3e-07       6      68 ..       3      72 ..       1      73 [. 0.88

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.4e-10
   PF13414.1  6 lkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                l +l+  l  +g yd+A  +ye Al+l      p++++    ++ lA ++  +g +y++A +  e+Al+++
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLFeekfgPDHPKvatPLNDLAELLDLQG-NYDQAKQLHERALRIR 72
                67999*********************944555577777776*************.7************985 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.6   0.00029      0.26       5      31 ..       4      30 ..       3      33 .. 0.90
   2 !   22.4   0.2   6.3e-08   5.8e-05       4      34 .]      45      75 ..      42      75 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00029
                HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  5 ynlGnaylklgkydeAleyyekALeln 31
                 nl+ +++ +g yd+A  +ye AL+l 
  MMETSP0890-20130614|2171_1  4 LNLAGLLRDQGYYDKAKPHYEGALKLF 30
                79999****************999996 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 6.3e-08
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnPnn 34
                l+ l+ ++  +g+yd+A +  e+AL+++ +n
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQEN 75
                789************************9876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-05     0.023       4      32 ..       3      31 ..       1      43 [. 0.85
   2 !   15.1   0.5   2.6e-05     0.023       4      34 ..      45      75 ..      41      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.6e-05
   PF13428.1  4 llalarallalGdpdeAiallrralalaP 32
                ll la +l+++G +d+A  +++ al+l+ 
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLFE 31
                689**********************9764 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.6e-05
   PF13428.1  4 llalarallalGdpdeAiallrralalaPdd 34
                l +la++l  +G++d+A +l +ral+   ++
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQEN 75
                569**********************988776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   2.1e-06    0.0019       5      30 ..       4      29 ..       3      33 .. 0.93
   2 !   10.1   0.0   0.00053      0.49       4      32 ..      45      73 ..      42      76 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.1e-06
                TT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  5 ynlGdiYrqlGdydkAkeylekalel 30
                +nl+ ++r+ G ydkAk ++e al+l
  MMETSP0890-20130614|2171_1  4 LNLAGLLRDQGYYDKAKPHYEGALKL 29
                789999******************97 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00053
                TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                ++ l++++   G+yd+Ak+  e+al + +
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQ 73
                6679999999********99888888865 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   2.8   4.3e-08   3.9e-05       1      61 [.       4      72 ..       4      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.3e-08
   PF13432.1  1 lalArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalala 61
                l lA +l ++G yd+A +++e al+l+        P+ a  l  lae+l  +g++d+A +l ++al+++
  MMETSP0890-20130614|2171_1  4 LNLAGLLRDQGYYDKAKPHYEGALKLFeekfgpdhPKVATPLNDLAELLDLQGNYDQAKQLHERALRIR 72
                579999**************************999999999************************9765 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0041       3.7       4      24 ..       3      23 ..       3      24 .. 0.88
   2 !   13.5   0.1   7.1e-05     0.065       5      23 ..      46      64 ..      42      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0041
                H---HHHHHH-------HHHH CS
   PF07721.9  4 llaLArallalGdldeArall 24
                ll+LA +l ++G +d A  + 
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHY 23
                689**************8776 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 7.1e-05
                ---HHHHHH-------HHH CS
   PF07721.9  5 laLArallalGdldeAral 23
                 +LA++l ++G++d+A +l
  MMETSP0890-20130614|2171_1 46 NDLAELLDLQGNYDQAKQL 64
                58**************876 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.092        84      17      33 ..       4      20 ..       3      21 .. 0.90
   2 !   16.6   0.1   6.1e-06    0.0055       9      34 .]      38      63 ..      22      63 .. 0.89
   3 ?   -2.4   0.0       7.6   6.9e+03       2       9 ..      65      72 ..      64      75 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.092
   PF13431.1 17 nnLAelllnnGdleeAe 33
                 nLA ll ++G +++A+
  MMETSP0890-20130614|2171_1  4 LNLAGLLRDQGYYDKAK 20
                69999**********96 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 6.1e-06
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAeq 34
                +P+ a  +n LAell  +G++++A+q
  MMETSP0890-20130614|2171_1 38 HPKVATPLNDLAELLDLQGNYDQAKQ 63
                5677999*****************98 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 7.6
   PF13431.1  2 yekaleld 9 
                 e+al++ 
  MMETSP0890-20130614|2171_1 65 HERALRIR 72
                68888875 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011       9.9      43      78 ..       3      38 ..       1      44 [. 0.91
   2 !   11.5   0.0    0.0001     0.094      43      72 ..      45      74 ..      38      79 .] 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
   PF04910.9 43 LlqlsevyreqgdfevAndlieraLfilervfhpsF 78
                Ll+l+ ++r qg + +A  + e aL ++e+ f p+ 
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLFEEKFGPDH 38
                9****************************9998875 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.0001
   PF04910.9 43 LlqlsevyreqgdfevAndlieraLfiler 72
                L  l+e++  qg++ +A +l eraL i ++
  MMETSP0890-20130614|2171_1 45 LNDLAELLDLQGNYDQAKQLHERALRIRQE 74
                7789*********************77665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0052       4.8       3      30 ..       3      30 ..       2      32 .. 0.86
   2 !    8.4   0.1    0.0032       2.9       6      22 ..      48      64 ..      47      72 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0052
                HHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF13174.1  3 lyklalsyyklgdtdeAlealerlikey 30
                l++la +++ +g +d+A+  +e  +k +
  MMETSP0890-20130614|2171_1  3 LLNLAGLLRDQGYYDKAKPHYEGALKLF 30
                789998999999******9999888765 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0032
                HHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlea 22
                la++++ +g++d+A+++
  MMETSP0890-20130614|2171_1 48 LAELLDLQGNYDQAKQL 64
                79999999*******96 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   3.7e-05     0.034     136     173 ..      33      71 ..       6      76 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.7e-05
   PF11846.3 136 kllrdkPrpav.irrlalalallGkeeeArdamaeaaal 173
                 k+  d P++a+ +++la +l l+G+ ++A++++++a ++
  MMETSP0890-20130614|2171_1  33 KFGPDHPKVATpLNDLAELLDLQGNYDQAKQLHERALRI 71 
                 5556778877757899******************99876 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         4   3.7e+03      25      30 ..      24      29 ..      16      35 .. 0.63
   2 ?   11.1   0.2   0.00017      0.16      13      37 ..      54      78 ..      45      79 .] 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4
   PF10516.4 25 rkaLeL 30
                + aL+L
  MMETSP0890-20130614|2171_1 24 EGALKL 29
                445554 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00017
   PF10516.4 13 EnEnFpqAveDlrkaLeLreqllpp 37
                 ++n++qA +  ++aL +r+++l p
  MMETSP0890-20130614|2171_1 54 LQGNYDQAKQLHERALRIRQENLGP 78
                689******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 291.25
//
Query:       MMETSP0890-20130614|2175_1  [L=1074]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-61  207.3   3.1    1.4e-61  207.3   2.2    2.6  3  PF00122.15 E1-E2 ATPase
    3.1e-45  153.8   3.8    3.1e-45  153.8   2.6    1.7  2  PF00689.16 Cation transporting ATPase, C-terminus
    4.8e-29  102.2   0.0    6.3e-28   98.5   0.0    2.7  1  PF00702.21 haloacid dehalogenase-like hydrolase
    8.3e-23   79.5   0.0    2.2e-22   78.1   0.0    1.8  1  PF00690.21 Cation transporter/ATPase, N-terminus
    1.9e-18   66.0   0.0    4.5e-18   64.8   0.0    1.7  1  PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
    4.6e-16   59.4   0.7    1.3e-15   57.9   0.5    1.8  1  PF12710.2  haloacid dehalogenase-like hydrolase
    0.00042   19.8   1.4     0.0013   18.2   0.8    1.9  2  PF08282.7  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.031   13.5   8.0        4.1    6.5   0.0    2.8  2  PF03631.10 Virulence factor BrkB
      0.048   13.7   0.0       0.22   11.6   0.0    2.1  2  PF13419.1  Haloacid dehalogenase-like hydrolase
      0.055   13.2   0.0       0.18   11.5   0.0    1.9  1  PF13344.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.95   1.3e+03     125     183 ..      26      84 ..      21      87 .. 0.75
   2 !  207.3   2.2   1.1e-64   1.4e-61       1     230 []      91     345 ..      91     345 .. 0.95
   3 ?   -3.5   0.8       2.8   3.8e+03     153     173 ..    1028    1050 ..     999    1060 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.95
  PF00122.15 125 keteigkiarlvqeaksaetplqkkldrlaklllilvlavailifiislvtdvaeklle 183
                 +++++ k  r   +++++ +  ++ l+++ ++l+++ l+ a++ f ++l  d+ e+ +e
  MMETSP0890-20130614|2175_1  26 AASRLEKYGRNELDKEDPTPLWKLILEQFDDVLVKVLLMAAVVSFGLALTGDNEEEGIE 84 
                 56777777777778888867778889999999999999999999977776556665555 PP

  == domain 2    score: 207.3 bits;  conditional E-value: 1.1e-64
  PF00122.15   1 viilavllnalvefvqeykaekalesLkrlspetaatvirdgkeqeipakeLvvGDiviiktGdrvpaDgrlie..agslevdesalTGEslpvtksve........laergnkvfsgtvvlsgegkaiVtatgketeigkiarlvqeaks..aetplqkkldrlaklllilvlavailifiislvt.............dvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230
                 vi+l++++na+v+ +qe++ae+ale+Lk++++e+a tv+   +    +a eLv+GDivi+ +GdrvpaD+rl +  +g++   +++lTGEs+ v+k +e         + +  ++f+gt + sg++ ++Vtatg++te+gki+  ++ea     +tpl+kkld ++ ll+ l+ ++++l+++i+  +              + + ++ ++ ia+al+v+aiPegLp+++t++la+g+++++k++++vrkl+++Et
  MMETSP0890-20130614|2175_1  91 VIMLILIINAIVGVWQESNAERALEALKEMQSEHAKTVRGGVSLPHLSAAELVPGDIVILSSGDRVPADMRLCHnkTGTVRAMQASLTGESDVVQKRPEivsdvdaeIQSKEGMLFAGTALASGSCVGVVTATGMKTEMGKISGAISEAAAevDDTPLKKKLDAFGVLLTQLIGIICVLVWLINYSHflkietsprlkieFSFSRCTYYFKIAVALAVAAIPEGLPTVITTCLALGTRKMVKRNAIVRKLTSVET 345
                 79********************************5555555588889**************************98888999*************************9999************************************877665588**************************999888999****************************************************************8 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.8
  PF00122.15  153 laklllilvlavailif..iisl 173 
                  + ++ll+lv+ +a++i+  ++ +
  MMETSP0890-20130614|2175_1 1028 FNEWLLVLVFSFAVVIIdeVLKF 1050
                  34455666666666665554444 PP

>> PF00689.16  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         5   6.8e+03      60      76 ..     262     278 ..     255     308 .. 0.58
   2 !  153.8   2.6   2.3e-48   3.1e-45       2     182 .]     824    1051 ..     823    1051 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5
  PF00689.16  60 lqalvtllafflgllgf 76 
                 l++++++l+++++++ f
  MMETSP0890-20130614|2175_1 262 LIGIICVLVWLINYSHF 278
                 45666666666666644 PP

  == domain 2    score: 153.8 bits;  conditional E-value: 2.3e-48
  PF00689.16    2 lplsaiqiLwinLvtDslpalaLaleppekdimkrkPrkkkeplfskkmllriliqgllqalvtllafflgll........................gfgisekenkls..................................snfaqtaaFitlvlsqifnalnlrsrkeslfkfsgifsnkllllavllslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelrkll 182 
                    l ++q+Lw+nLvtD+ pa+aL+++pp+ d m ++Pr+ ++ l+s+ +l+r +++g++++++t+++f +++                                    +                                    +a+t+ + +lv ++++naln+ s++ sl++ +  + n++llla++ls++l+ li+yvp+++++f+++pl++ ewl++l+++++v+++de++k++
  MMETSP0890-20130614|2175_1  824 EGLIPVQLLWVNLVTDGPPATALGFNPPDADNMVKPPRRSDDALLSTWILIRYFVIGTYVGIATVGIFAVWFTqtsflgidfddghstvtfsqltnwD----------HcnewgdgfqvnlsynvagggvvsfdtpcefftkgKVKASTLSLSVLVAIEMMNALNALSEDCSLLQ-QPPWVNPYLLLAMVLSFGLHGLILYVPFFADIFSIVPLTFNEWLLVLVFSFAVVIIDEVLKFI 1051
                  5689*****************************************************************99997777777666666665555543330..........04445556666777777788889999999999999999*****************************.9************************************************************86 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   4.6e-31   6.3e-28       2     204 .]     350     753 ..     349     753 .. 0.66

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 4.6e-31
                 CEEEEECCTTTBETHHHH........................................................................................HHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH..................CEECTCCHCCEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...............................................H...............HHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC.....................................SEEEEHHH......TTSHHHHHHHHHHHTS-GGGEEEEESSCTTHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxx........................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21   2 ktvvfDktGTLtegepsv........................................................................................lgnkaalalaaaletgsehpigkavvaaakanstr..................tgfatfigrgvsgkvdgavgnpewmtalglrviapdlvaaegqskgrtvvvla...............................................q...............aralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi.....................................dslvfaev......kPepklfvaaieeLqidpgevamvGDgvnDapalaaAg 204
                 +++++DktGTLt++++s                                                                                         + ++a+l l+++l +       kav + +++   r                  +++++ +g      v    g pe +   ++ v+++d +      kgr +   a                                               +               + ++g+++ +dp++pe+ eav +++aagi v ++tgdn+ taeai +  g+                                                    P +k  + +++ L++ ++ +am+GDgvnDapal+ A+
  MMETSP0890-20130614|2175_1 350 TVICSDKTGTLTTNQMSCvrlavsgatensdlrvmalngtsydpsdgglcgiesvdngsrttrsasaaatakiavfdvvadvcalcneaelqldpkhpervvaigmPTEAALLPLIEKLTAPGGRVDKKAVGFPCTETAKRrsklerlailefdrnrksMSVLVNDGSNRALYVK---GAPESILDRAVAVLSSDGKPRKLTNKGRQAWTDAaadmassalrclalavkhdldselktyvppdsgsnlnarssknkkngNsildnpndyarlesgLCLVGLVGLQDPPRPEVPEAVSACRAAGIrVIVITGDNKLTAEAICRDIGVlssdedvqshsitgrdfaalskaqqrdflfkhasgdlS------GrvfsraEPKHK--QDIVRILKEAGEVTAMTGDGVNDAPALKLAD 753
                 79****************8888888888888888888888888888888888888888877777777777777777777777777777777777777777777776444555555555544433333344433344333334555553333333333333333333333333333...3333333333333333333333333333333333555555555555555667677777777777666666666666555550555566667777777******************************************************99999877776666555555555555555555553......0555555*****..********6666****************997 PP

>> PF00690.21  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.6e-25   2.2e-22       2      69 .]       2      69 ..       1      69 [. 0.99

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 1.6e-25
  PF00690.21  2 halsveevlaklktdlenGLtsdeaaerlkkyGpNelpepkkksllrlflrqfkdplvilLlvaaivs 69
                ++++v+evl++l+t+le+GLt++ aa rl+kyG+Nel+++ +++l++l+l+qf d+lv +Ll+aa+vs
  MMETSP0890-20130614|2175_1  2 WSKPVDEVLKELDTSLETGLTPSVAASRLEKYGRNELDKEDPTPLWKLILEQFDDVLVKVLLMAAVVS 69
                899****************************************************************8 PP

>> PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   3.3e-21   4.5e-18       1      88 [.     433     534 ..     433     537 .. 0.87

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 3.3e-21
   PF13246.1   1 alcnsasleeeeekenee..ilGdptEaALlvlaeklgvgkd.............veelreeykkvaelpFnserKrmsvvhkekeylllfvKGAperilerC 88 
                 alcn+a+l+ +++  + +  ++G ptEaALl l+ekl   +               ++ r++ +++a l+F+++rK+msv++++++ ++l+vKGApe+il+r 
  MMETSP0890-20130614|2175_1 433 ALCNEAELQLDPKHPE-RvvAIGMPTEAALLPLIEKLTAPGGrvdkkavgfpcteTAKRRSKLERLAILEFDRNRKSMSVLVNDGSNRALYVKGAPESILDRA 534
                 79******77765554.467*****************6665599********99888899*********************964447999**********995 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.5   9.4e-19   1.3e-15       1     191 []     352     750 ..     352     750 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 9.4e-19
                 EEE------B---..........HHHHHHHHH--H...HHH..................................................................................................................................................................................................HHHHHHHHHHHHT....-HHHH----HHHHHHHHHH......................H--B.......HHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-----........................HH----HHHHHHH..HHSHHHHHHHH---TT----S--EE---GGGHHHHH CS
   PF12710.2   1 avFDkDGTLteddtdflryllk.lldvlgealakdaslaslkdst..........................................................................................................................................................................................cltlsdpkdllellaey....ggirviglaarylealakeieea...............klfegfi.......pdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlateledeg........................ggkvdgritgkld..gKaraverlvvlaykqvggrivvaiGDsanDlpalk 191
                 +++Dk+GTLt++ +   r+++  +++  +                                                                                                                                                                                                          cl+l  ++dl+  l+ y     g ++ + +++  +                        +++ g++       p+++e++++ ++ag+rv+v++gd+ l+a++++++ g++     +++ ++ +                         g+ +gr++++ +  +K+ +v+ l      ++ g+ +++ GD+ nD palk
  MMETSP0890-20130614|2175_1 352 ICSDKTGTLTTNQMSCVRLAVSgATENSDL--------------RvmalngtsydpsdgglcgiesvdngsrttrsasaaatakiavfdvvadvcalcneaelqldpkhpervvaigmpteaallpliekltapggrvdkkavgfpctetakrrsklerlailefdrnrksmsvlvndgsnralyvkgapesildravavlssdgkprkltnkgrqawtdaaadmassalrCLALAVKHDLDSELKTYvppdSGSNLNARSSKNKKNG------NsildnpndyarlesgLCLVGLVglqdpprPEVPEAVSACRAAGIRVIVITGDNKLTAEAICRDIGVL-----SSDEDVQShsitgrdfaalskaqqrdflfkhaSGDLSGRVFSRAEpkHKQDIVRIL------KEAGEVTAMTGDGVNDAPALK 750
                 7************43333333342222222..............122233334444558889999999999999*************************************************************************************************************************************9999999999999999999999998888888888888888876541444444444433322......0222334566677777444555566666677777*****9999******************9866554.....4444344456899999************99995556777777766888******99......577899*************97 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   1.9e+03      20      51 ..     638     669 ..     634     673 .. 0.80
   2 !   18.2   0.8   9.5e-07    0.0013     198     253 ..     729     785 ..     722     786 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.4
                 HHHHHHHHHHTT-EEEEEESS-HHHHHCCHCH CS
   PF08282.7  20 tkeaikklqekgikvviaTGRslsevlpllee 51 
                   ea+  ++ +gi+v++ TG +  +++ + ++
  MMETSP0890-20130614|2175_1 638 VPEAVSACRAAGIRVIVITGDNKLTAEAICRD 669
                 56899999************888777777665 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 9.5e-07
                 TT--GGGEEEE----TTHHHHHH-TEEEE-TTS-HHH.HHH-SEE---GGG---HHH CS
   PF08282.7 198 lnisleeviafGDgeNDieMLelaglgvAmgnaspev.kaaAdyvtdsnnedGvaka 253
                 l+   e ++  GDg ND + L+la++g Amg a  ev k+a+d++ ++ n + ++ a
  MMETSP0890-20130614|2175_1 729 LKEAGEVTAMTGDGVNDAPALKLADIGLAMGIAGTEVaKEASDMILADDNFSTIVAA 785
                 55566778999********************98777615555666666655777666 PP

>> PF03631.10  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.003       4.1      66     152 ..     198     290 ..     164     315 .. 0.63
   2 ?    6.0   3.9    0.0042       5.7     129     219 ..     963    1059 ..     952    1066 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.003
  PF03631.10  66 llsat......slgllglgvllwsasgvvaalqralnkiwgvepkekrsflrkrllslllllllglllllslalsvflksalladll...pllgll 152
                 ++s++      ++ + g  v +++a+g+  ++ +   +i +   +     l+k+l+++++ll+ ++ ++++l+ ++    +l+   +   p l+++
  MMETSP0890-20130614|2175_1 198 IQSKEgmlfagTALASGSCVGVVTATGMKTEMGKISGAISEAAAEVDDTPLKKKLDAFGVLLTQLIGIICVLVWLINYSHFLK---IetsPRLKIE 290
                 33333344421444455555559999998888888888888877667789***********9888888888877666555333...2223444433 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0042
  PF03631.10  129 lslalsvflksalladll....pllgllleisell.llqllrllv.slllltllfallyrflpnrkvkwraalpGallaavlwlllkalfslylsnf 219 
                  lsl+++v+++ ++  ++l     ll+++ ++++ l l ++l++ + +l+l + +fa ++ ++p +  +w  +l+ +++++++ ++lk++ ++++ + 
  MMETSP0890-20130614|2175_1  963 LSLSVLVAIEMMNALNALsedcSLLQQPPWVNPYLlLAMVLSFGLhGLILYVPFFADIFSIVPLTFNEWLLVLVFSFAVVIIDEVLKFIGRNFVTQK 1059
                  566666666666666666888877777778888888888888865155555888999********************************99888764 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.22      77     117 ..     633     673 ..     611     694 .. 0.89
   2 ?   -2.3   0.0         3     4e+03     150     170 ..     769     789 ..     763     791 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00016
   PF13419.1  77 elfpdvvellrrlkakglklvilSngsaeavellleklgle 117
                 +++p+v+e++ +++a+g+++++++  ++ ++e + +  g++
  MMETSP0890-20130614|2175_1 633 PPRPEVPEAVSACRAAGIRVIVITGDNKLTAEAICRDIGVL 673
                 89***********99**********9999999988888876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3
   PF13419.1 150 peeilfidDsledveaAraaG 170
                 ++++++ dD+ + ++aA + G
  MMETSP0890-20130614|2175_1 769 ASDMILADDNFSTIVAAISEG 789
                 67899************9877 PP

>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.18      13      64 ..     632     680 ..     624     711 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00013
   PF13344.1  13 dkaipgaaealkalraagkpvvllTNnsskseeeyakkleklgvdvteeqvv 64 
                 d + p+++ea+ a+raag++v+++T  ++ + e+++   +++gv  ++e+v 
  MMETSP0890-20130614|2175_1 632 DPPRPEVPEAVSACRAAGIRVIVITGDNKLTAEAIC---RDIGVLSSDEDVQ 680
                 56789*********************9999966655...5556655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.61u 0.41s 00:00:02.02 Elapsed: 00:00:00.94
# Mc/sec: 2737.97
//
Query:       MMETSP0890-20130614|2179_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.017   14.6   0.0    1.3  1  PF06743.10 FAST kinase-like protein, subdomain 1
      0.045   13.6   0.3       0.06   13.2   0.2    1.4  1  PF06592.8  Protein of unknown function (DUF1138)
       0.15   10.8   0.6       0.14   10.8   0.4    1.2  1  PF01057.12 Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.8e-06     0.017      19      50 ..      17      48 ..       2      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.8e-06
  PF06743.10 19 eeffeklasalereLdsispelllnlvwSlcl 50
                 ++f+++a     +L+++ p++l n+ w+++ 
  MMETSP0890-20130614|2179_1 17 PALFNAIAATALNKLGGFTPQTLANTAWAFAT 48
                589***************************86 PP

>> PF06592.8  Protein of unknown function (DUF1138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.3e-05      0.06      26      45 ..      29      48 ..       3      50 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
   PF06592.8 26 kilGGttprtvadkeWgkat 45
                  lGG tp+t+a+  W  at
  MMETSP0890-20130614|2179_1 29 NKLGGFTPQTLANTAWAFAT 48
                348*************9888 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   3.2e-05      0.14     115     137 ..       4      26 ..       2      48 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.2e-05
  PF01057.12 115 ntvwfyGpantGktnlaeaIaka 137
                 nt w++ +a+ G++ l++aIa +
  MMETSP0890-20130614|2179_1   4 NTTWAFATASVGAPALFNAIAAT 26 
                 9*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.67
# Mc/sec: 182.41
//
Query:       MMETSP0890-20130614|2191_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 260.66
//
Query:       MMETSP0890-20130614|2193_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-15   57.2   0.2    5.9e-15   55.8   0.1    1.8  1  PF02338.14 OTU-like cysteine protease
  ------ inclusion threshold ------
       0.02   14.1   0.0      0.036   13.3   0.0    1.4  1  PF10275.4  Peptidase C65 Otubain
      0.049   13.5   0.0       0.16   11.8   0.0    1.9  2  PF13006.2  Insertion element 4 transposase N-terminal


Domain annotation for each model (and alignments):
>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   1.3e-18   5.9e-15       1     126 []     140     277 ..     140     277 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.3e-18
                 -----HHHHHHHHHH-----HHHHHHHHHHSS--HHHH-------------..................................-HHHHHHHHHHHHHHTS-EEE-----------------B--TTS-GGGS--S-EEE--BTTB- CS
  PF02338.14   1 pgDGnCLfhavsqqlwldhdgrkekheelrealveylrehrelfeefleeee......................eeYlkeiskdgewgeeieifalahilrrpiivlkssggealvyikfggkylplekppsiclsspgvlgydgaHy 126
                 +gDG C f+a+++ql+    +++++h  +r++  +yl+eh  lf+++                           ++Y+k +++d++wg++++++a+a ++r++i +l s++ +     ++  +  p++++  ++  + g  +  + Hy
  MMETSP0890-20130614|2193_1 140 KGDGACQFRAIAHQLF----DHSKHHAIVRDRALRYLHEHPPLFHDCEIYVSprlpfgtgknhavsvvsvgedfSKYCKIMAQDSAWGDATTLQAIASVFRVRILLLTSHSAN----FEIVVEPDPTHCEAAVREIWIG--FFAEMHY 277
                 69*************9....6779999***********999999988777777789999999999999999999********************************6664444....4444444667777777777666..4445666 PP

>> PF10275.4  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.8e-06     0.036      34      63 ..     127     156 ..      76     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.8e-06
   PF10275.4  34 kelkekysgirrvrgDGnCfYrafafsyle 63 
                 ++l+++ ++i +v+gDG C +ra+a +++ 
  MMETSP0890-20130614|2193_1 127 ARLANYGRKIYQVKGDGACQFRAIAHQLFD 156
                 56777778999**************99886 PP

>> PF13006.2  Insertion element 4 transposase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.5e-05      0.16       5      41 ..      79     115 ..      75     121 .. 0.84
   2 ?   -2.8   0.0       1.3   5.8e+03      46      66 ..     268     288 ..     267     307 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.5e-05
   PF13006.2   5 slgvLtrllppelidevlaetgkaeiRrrkLPaevvv 41 
                 + + +++  ++++i++v++ +g+ ++Rr+kLPa   v
  MMETSP0890-20130614|2193_1  79 DHQLISETSCAAAISRVFHSAGRHQHRRKKLPAPPSV 115
                 55678889999*********************97655 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.3
   PF13006.2  46 alaLfrdesyeeVvrkLdlgl 66 
                 +++ f +  y  Vv++ d+  
  MMETSP0890-20130614|2193_1 268 WIGFFAEMHYVSVVSDFDSPA 288
                 678899999999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.73
# Mc/sec: 1162.07
//
Query:       MMETSP0890-20130614|2201_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   16.2   0.1      0.018   14.7   0.0    1.8  2  PF08283.6 Geminivirus rep protein central domain


Domain annotation for each model (and alignments):
>> PF08283.6  Geminivirus rep protein central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-06     0.018      10      50 ..      63     105 ..      53     119 .. 0.81
   2 ?   -3.4   0.0      0.56   7.6e+03      92     105 ..     128     141 ..     123     142 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-06
   PF08283.6  10 akal..natskeeaLsiikeelPkdwvlklhnleynaerlFpk 50 
                  + +  +a s++ aL i+ + +P  +++++ +++ n  +++  
  MMETSP0890-20130614|2201_1  63 FQIIlhEAKSADHALAILSQLAPDVYSTQYVKMKQNFTHIYGC 105
                 4444789********************************9865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.56
   PF08283.6  92 siivegdartGdle 105
                  +i+ g++ tG++ 
  MMETSP0890-20130614|2201_1 128 ITIIWGKSNTGKTN 141
                 56788999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 784.26
//
Query:       MMETSP0890-20130614|2204_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.6   0.0     0.0018   17.9   0.0    1.4  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.071   12.2   0.1        2.9    6.9   0.0    2.6  3  PF10503.4  Esterase PHB depolymerase
      0.085   12.1   0.0       0.18   11.1   0.0    1.4  1  PF02230.11 Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     4e-07    0.0018       2     123 ..      71     258 ..      70     290 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4e-07
   PF12695.2   2 vvlvhGaggdssa...ye.plaealakrgfavvav...............dlpghgasegaaaakrvl...........................................................aadll...dleriilvGhSlGGgvalelagrd.drvkglvllapfpd..gedlakltlpvllihGtrDgvvppeeaekl 123
                 +v++hG++g s++   +  +l  a  k gf  v                                                                                              +a  +   dl+r ++ G+S GG ++++l ++   r++++  +++ ++      +k  +p++ + G++D+ vp++  ++l
  MMETSP0890-20130614|2204_1  71 IVMSHGGWGLSAQedsLDsGLSGAAEKYGFIAVFAqgysdnyvqahpkesW----------------YsfntigstgstaenptceswagssnycyqscaercdergcywttcrdsieaaniilndvEA--KtciDLSREYVSGQSNGGIFSMRLGAELsHRLAAIAPVSATFThgFIGTPKYPMPIFDVVGSQDHTVPVNRTNNL 258
                 889999988544411143244444444455555443444433333333330................22333333333334444444455555566666666666666677777776666666666523..1458**********************888999**99999965523345568888**************9988774 PP

>> PF10503.4  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.023   1.1e+02      13      72 ..      66     129 ..      51     141 .. 0.69
   2 ?    6.9   0.0   0.00063       2.9      86     128 ..     179     221 ..     147     232 .. 0.80
   3 ?   -0.9   0.0      0.16   7.2e+02     167     194 ..     235     261 ..     218     268 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.023
   PF10503.4  13 rgalplvvmlhG.ctqsveefaaGtrmnlladklGvvvl....ypeqslranaqkcwnwykdtdr 72 
                    lp+ vm hG    s++e +  + +   a+k+G++ +    y ++  +a+ ++ w  ++    
  MMETSP0890-20130614|2204_1  66 DRPLPI-VMSHGgWGLSAQEDSLDSGLSGAAEKYGFIAVfaqgYSDNYVQAHPKESWYSFNTIGS 129
                 334565.56665156789999999999999*****976634446778889999999988876555 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00063
   PF10503.4  86 dalvdehrvdaarvyvaGlsaGaaladllalhypdvfaavalh 128
                 + +  +  +d +r yv+G s G+ ++  l+     ++aa+a  
  MMETSP0890-20130614|2204_1 179 NDVEAKTCIDLSREYVSGQSNGGIFSMRLGAELSHRLAAIAPV 221
                 445566789******************************9854 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.16
   PF10503.4 167 ypglpalvvqGdadtvvavknaeslvva 194
                 yp +p + v G  d++v v+ +++l   
  MMETSP0890-20130614|2204_1 235 YP-MPIFDVVGSQDHTVPVNRTNNLSNY 261
                 44.8999999********9999988765 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.8e-05      0.18      95     183 ..     180     264 ..     168     272 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.8e-05
  PF02230.11  95 daelkkgipssriiigGFSqGaalalylaltspkplggivafsgalplnqkleqsatkva..kipilqlHgeeDevvplalgkaakellkt 183
                 d+e k+ i+ sr  + G S G++ ++ l   ++++l+ i  +s ++        ++  ++   +pi+ + g++D +vp+   ++++++ ++
  MMETSP0890-20130614|2204_1 180 DVEAKTCIDLSREYVSGQSNGGIFSMRLGAELSHRLAAIAPVSATFT------HGFIGTPkyPMPIFDVVGSQDHTVPVNRTNNLSNYALS 264
                 6677788*****************************99987776543......33333333348****************99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.03
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|2226_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.78
# Mc/sec: 181.26
//
Query:       MMETSP0890-20130614|2222_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-20   72.8   4.9    3.8e-17   61.4   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    1.4e-17   63.3   0.1    7.2e-17   60.9   0.1    1.8  1  PF13424.1  Tetratricopeptide repeat
    1.8e-09   37.8   0.6    0.00021   21.7   0.1    1.5  2  PF13432.1  Tetratricopeptide repeat
    5.9e-09   35.3   0.1    7.3e-09   35.0   0.1    1.3  1  PF13414.1  TPR repeat
    8.1e-09   34.6   0.3    8.1e-09   34.6   0.2    1.8  2  PF00515.23 Tetratricopeptide repeat
    3.5e-07   29.5   1.1      5e-07   29.0   0.1    1.7  2  PF07719.12 Tetratricopeptide repeat
    8.2e-07   28.6   1.6    4.3e-05   23.2   0.1    2.6  2  PF13431.1  Tetratricopeptide repeat
    9.5e-07   28.0   0.2    4.2e-06   26.0   0.0    1.9  2  PF13176.1  Tetratricopeptide repeat
    4.5e-05   22.8   0.1    8.3e-05   21.9   0.1    1.4  1  PF13181.1  Tetratricopeptide repeat
     0.0031   17.9   0.1     0.0057   17.0   0.0    1.6  1  PF13428.1  Tetratricopeptide repeat
     0.0072   16.6   0.0      0.012   15.8   0.0    1.5  1  PF13174.1  Tetratricopeptide repeat
     0.0099   16.1   0.0       0.02   15.1   0.0    1.5  1  PF07721.9  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.7   0.3        2.2    8.6   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
      0.014   15.0   0.0      0.019   14.6   0.0    1.2  1  PF07720.7  Tetratricopeptide repeat
      0.066   13.2   0.0      0.076   13.0   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0048       4.3      32      42 .]       2      12 ..       1      12 [. 0.80
   2 !   61.4   0.0   4.1e-20   3.8e-17       1      42 []      13      54 ..      13      54 .. 0.98
   3 ?    5.5   0.3     0.016        15       1      14 [.      55      68 ..      55      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0048
   PF13374.1 32 rrrllGddHPd 42
                r++ lG++HPd
  MMETSP0890-20130614|2222_1  2 REEKLGPNHPD 12
                56667*****8 PP

  == domain 2    score: 61.4 bits;  conditional E-value: 4.1e-20
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a +lnnLAl+l+++g+y+eA +l+e+a +i++++lG++HP+
  MMETSP0890-20130614|2222_1 13 VAQSLNNLALLLQNQGKYDEAKPLFERAIEIWEKVLGPNHPH 54
                799**************************************6 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.016
   PF13374.1  1 taaalnnLAlalra 14
                +aa lnnLA +l +
  MMETSP0890-20130614|2222_1 55 VAAGLNNLAGLLEN 68
                7899*****99866 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   7.9e-20   7.2e-17       1      58 [.      10      68 ..      10      70 .] 0.96

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 7.9e-20
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlyla 58
                hpd+a++lnnlal+l+ +g+ydeA  l+e+a+e+  ++lg++hp +a  lnnla l++ 
  MMETSP0890-20130614|2222_1 10 HPDVAQSLNNLALLLQNQGKYDEAKPLFERAIEIwEKVLGPNHPHVAAGLNNLAGLLEN 68
                9*********************************99999***************99876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   8.7e-07    0.0008      29      59 ..      12      42 ..       4      53 .. 0.55
   2 !   21.7   0.1   2.3e-07   0.00021       2      38 ..      19      63 ..      18      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 8.7e-07
   PF13432.1 29 eaaeallllaeallrlgrldeAaallraala 59
                + a+ l +la +l  +g++deA  l+++a++
  MMETSP0890-20130614|2222_1 12 DVAQSLNNLALLLQNQGKYDEAKPLFERAIE 42
                5555555555555555555555555555552 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.3e-07
   PF13432.1  2 alArallraGdydeAlaaleaalala........Peaaealllla 38
                 lA++l ++G+ydeA +++e+a++ +        P+ a  l +la
  MMETSP0890-20130614|2222_1 19 NLALLLQNQGKYDEAKPLFERAIEIWekvlgpnhPHVAAGLNNLA 63
                58************************9999955555555555444 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1     8e-12   7.3e-09       2      49 ..      13      68 ..       5      70 .] 0.86

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 8e-12
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylk 49
                +A++l++l+  l ++g+ydeA  ++e+A+e++     pn++     ++nlA ++++
  MMETSP0890-20130614|2222_1 13 VAQSLNNLALLLQNQGKYDEAKPLFERAIEIWekvlgPNHPHvaaGLNNLAGLLEN 68
                79****************************98777786664444499999987766 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.2   8.9e-12   8.1e-09       1      31 [.      14      44 ..      14      46 .. 0.94
   2 ?   -0.6   0.1       1.1     1e+03       1      12 [.      56      67 ..      56      69 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 8.9e-12
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a++l+nl+++++++gkydeA   +e+A+e+ 
  MMETSP0890-20130614|2222_1 14 AQSLNNLALLLQNQGKYDEAKPLFERAIEIW 44
                789**************************95 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.1
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a  l+nl+ ++ 
  MMETSP0890-20130614|2222_1 56 AAGLNNLAGLLE 67
                66899*997665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   5.5e-10     5e-07       1      30 [.      14      43 ..      14      43 .. 0.94
   2 ?   -1.4   0.1       2.9   2.6e+03       1      13 [.      56      68 ..      56      69 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 5.5e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+ l+nl+l++ ++g+y+eA+ +fe+A+e+
  MMETSP0890-20130614|2222_1 14 AQSLNNLALLLQNQGKYDEAKPLFERAIEI 43
                5789************************96 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.9
                HHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyk 13
                a +l+nl+ ++++
  MMETSP0890-20130614|2222_1 56 AAGLNNLAGLLEN 68
                5678999877765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   4.8e-08   4.3e-05       9      33 ..      10      34 ..       6      35 .. 0.93
   2 ?    4.1   0.1     0.064        58       1      22 [.      36      65 ..      36      69 .. 0.60

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.8e-08
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a+++nnLA+ll+n+G+++eA+
  MMETSP0890-20130614|2222_1 10 HPDVAQSLNNLALLLQNQGKYDEAK 34
                7999*******************97 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.064
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAel 22
                l+e+a+e+      Pn+   a  +nnLA l
  MMETSP0890-20130614|2222_1 36 LFERAIEIWekvlgPNHphvAAGLNNLAGL 65
                688999986455555554446666666655 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.7e-09   4.2e-06       1      34 [.      16      49 ..      16      51 .. 0.89
   2 ?   -0.4   0.1       1.3   1.2e+03       2      11 ..      59      68 ..      59      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4.7e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpld 34
                +l+nLa l +++g+y++A  l+era+++++  l+
  MMETSP0890-20130614|2222_1 16 SLNNLALLLQNQGKYDEAKPLFERAIEIWEKVLG 49
                79**********************9888876655 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.3
   PF13176.1  2 llnLarlysr 11
                l+nLa l ++
  MMETSP0890-20130614|2222_1 59 LNNLAGLLEN 68
                799*998775 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   9.1e-08   8.3e-05       2      30 ..      15      43 ..      14      43 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 9.1e-08
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                ++++nl++++ + G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|2222_1 15 QSLNNLALLLQNQGKYDEAKPLFERAIEI 43
                789************************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.2e-06    0.0057       4      33 ..      17      51 ..      13      65 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 6.2e-06
   PF13428.1  4 llalarallalGdpdeAiallrrala.....laPd 33
                l  la +l ++G +deA  l++ra++     l+P+
  MMETSP0890-20130614|2222_1 17 LNNLALLLQNQGKYDEAKPLFERAIEiwekvLGPN 51
                55799********************9555554444 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-05     0.012       5      28 ..      19      42 ..      16      47 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +lal+++++g++deA+ ++er i+
  MMETSP0890-20130614|2222_1 19 NLALLLQNQGKYDEAKPLFERAIE 42
                69*******************997 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-05      0.02       2      26 .]      15      39 ..      14      39 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.2e-05
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                + l +LA +l+ +G +deA  l+er
  MMETSP0890-20130614|2222_1 15 QSLNNLALLLQNQGKYDEAKPLFER 39
                67789**************999997 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0024       2.2      64      84 ..       8      28 ..       2      29 .. 0.87
   2 ?    5.9   0.0     0.017        15      64      82 ..      50      68 ..      27      68 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0024
   PF14357.1 64 aeHPklagtlrnildsLanmG 84
                 +HP++a+ l+n++  L+n G
  MMETSP0890-20130614|2222_1  8 PNHPDVAQSLNNLALLLQNQG 28
                58***************9966 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.017
   PF14357.1 64 aeHPklagtlrnildsLan 82
                 +HP++a+ l+n++  L n
  MMETSP0890-20130614|2222_1 50 PNHPHVAAGLNNLAGLLEN 68
                58***********998875 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.019       7      23 ..      20      36 ..      16      42 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.1e-05
                HHHHHHHTT-HHHHHHH CS
   PF07720.7  7 lAaefynkkkyqeArel 23
                lA  ++n++ky+eA  l
  MMETSP0890-20130614|2222_1 20 LALLLQNQGKYDEAKPL 36
                799***********666 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.3e-05     0.076      25      51 ..      14      45 ..       3      62 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.3e-05
                HHCHHHHHHHHHH---HHHHHHHHHC.....T CS
   PF12895.2 25 daylyalAlclylngeykrAyellrk.....l 51
                + +l +lAl l+++g+y++A  l+++     +
  MMETSP0890-20130614|2222_1 14 AQSLNNLALLLQNQGKYDEAKPLFERaieiwE 45
                4466678**********999888876654442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.74
# Mc/sec: 226.68
//
Query:       MMETSP0890-20130614|2224_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-54  183.5   0.0    8.8e-28   96.4   0.0    2.2  2  PF13306.1 Leucine rich repeats (6 copies)
      2e-22   78.5   0.0    1.7e-06   27.5   0.0    3.9  4  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
          4    7.6   6.6        2.1    8.5   0.1    2.8  3  PF05593.9 RHS Repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   5.3e-30   2.4e-26      14     103 ..       1      90 [.       1      90 [. 0.97
   2 !   96.4   0.0   1.9e-31   8.8e-28       1     102 [.      57     154 ..      57     159 .. 0.88

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 5.3e-30
   PF13306.1  14 ltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc 103
                 lt++t+p s+t+I + aF++c+ l+++tlp  lt+i +yaF +c+slt++t+p  lt+ig+naFs+c+sl ++++p  lt ig  aF++c
  MMETSP0890-20130614|2224_1   1 LTQLTLPASLTTIAAGAFRGCTGLTQLTLPAGLTTITNYAFGHCTSLTKLTLPAGLTTIGDNAFSDCTSLPKLTLPAGLTRIGGGAFHGC 90 
                 7899***********************************************************************************998 PP

  == domain 2    score: 96.4 bits;  conditional E-value: 1.9e-31
   PF13306.1   1 teIgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsn 102
                 t+Ig++aF++c++l ++t+p  +t+Ig  aF++c+sl++itlp  lt+ig++aF++c+slt +t+p+s+t i +naF +c +  +i i    t+i+++aF +
  MMETSP0890-20130614|2224_1  57 TTIGDNAFSDCTSLPKLTLPAGLTRIGGGAFHGCTSLTQITLPAGLTTIGRNAFEDCTSLTYLTLPDSITDIRNNAFDGCPNDLTIAI----TSIDEQAFDK 154
                 6899999999999999999999999999999999999999999999999999999999999999999999999999999998766666....7888888865 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.7e-10   1.7e-06       3      56 ..       1      52 [.       1      54 [. 0.96
   2 !   22.4   0.0   1.4e-08   6.5e-05      13      56 ..      56      98 ..      52     100 .. 0.96
   3 !   23.4   0.0   7.4e-09   3.4e-05      13      50 ..     102     138 ..      98     138 .. 0.96
   4 ?    0.1   0.0      0.14   6.3e+02      35      47 ..     142     154 ..     139     156 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 3.7e-10
   PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                L+ L L  + l++i+ gaF g++ L+ L L    l++i   af +++sL++L L
  MMETSP0890-20130614|2224_1  1 LTQLTLPAS-LTTIAAGAFRGCTGLTQLTLP-AGLTTITNYAFGHCTSLTKLTL 52
                778999999.*********************.********************98 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.4e-08
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+d+aF+++++L +L L    l++i  +af+g++sL+++ L
  MMETSP0890-20130614|2224_1 56 LTTIGDNAFSDCTSLPKLTLP-AGLTRIGGGAFHGCTSLTQITL 98
                89*******************.*******************988 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 7.4e-09
   PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50 
                 l++i+ +aF+++++L++L L  ++++ i  +af+g+p+
  MMETSP0890-20130614|2224_1 102 LTTIGRNAFEDCTSLTYLTLP-DSITDIRNNAFDGCPN 138
                 89*******************.**************96 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.14
   PF13855.1  35 nnlksispeafkg 47 
                  +++si+++af++
  MMETSP0890-20130614|2224_1 142 IAITSIDEQAFDK 154
                 5789999999975 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.9   8.7e+03      28      35 ..       1       8 [.       1      12 [. 0.44
   2 ?    8.5   0.1   0.00046       2.1       7      38 .]      24      57 ..      23      57 .. 0.94
   3 ?    2.1   0.1     0.045     2e+02       7      18 ..      93     104 ..      92     120 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.9
   PF05593.9 28 lTaltdpd 35
                lT+lt p+
  MMETSP0890-20130614|2224_1  1 LTQLTLPA 8 
                45555444 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00046
   PF05593.9  7 LtevtdatGrvt.t.YtYDaaGrlTaltdpdGtt 38
                Lt+ t + G +t t Y+      lT lt p+G t
  MMETSP0890-20130614|2224_1 24 LTQLTLPAGLTTiTnYAFGHCTSLTKLTLPAGLT 57
                899999*******98***************9976 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.045
   PF05593.9   7 LtevtdatGrvt 18 
                 Lt++t + G +t
  MMETSP0890-20130614|2224_1  93 LTQITLPAGLTT 104
                 788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 667.29
//
Query:       MMETSP0890-20130614|2225_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-29  100.5   7.7    1.1e-15   56.8   0.0    3.5  4  PF13374.1  Tetratricopeptide repeat
    2.2e-26   91.4   0.2    3.8e-12   45.8   0.0    2.2  2  PF13424.1  Tetratricopeptide repeat
    7.6e-13   47.3   3.8    6.9e-08   31.6   0.6    2.3  2  PF00515.23 Tetratricopeptide repeat
      1e-11   43.6   2.4    3.7e-07   29.4   0.2    2.2  2  PF07719.12 Tetratricopeptide repeat
    1.7e-11   43.4   1.7    2.4e-11   43.0   0.5    1.7  2  PF13414.1  TPR repeat
    1.8e-10   39.6   0.2    2.6e-05   23.5   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
      3e-09   36.2   6.6    0.00035   20.4   0.3    3.4  3  PF13431.1  Tetratricopeptide repeat
    1.2e-07   32.0   0.1    1.6e-07   31.6   0.1    1.2  1  PF13432.1  Tetratricopeptide repeat
    1.5e-06   27.4   2.0    0.00024   20.5   0.2    2.2  2  PF13181.1  Tetratricopeptide repeat
    5.2e-06   26.5   0.2     0.0025   18.1   0.0    2.4  2  PF13428.1  Tetratricopeptide repeat
    0.00092   19.3   0.0          2    8.9   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
      0.001   19.2   0.3      0.046   14.0   0.0    2.3  2  PF13174.1  Tetratricopeptide repeat
     0.0074   16.2   0.0      0.012   15.6   0.0    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.012   14.4   0.0       0.81    8.4   0.0    2.0  2  PF04910.9  Transcriptional repressor TCF25
      0.024   14.3   0.3      0.072   12.8   0.0    1.8  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.029   14.6   0.2        4.5    7.6   0.0    2.8  2  PF14357.1  Domain of unknown function (DUF4404)
      0.074   12.7   0.3        1.2    8.9   0.1    2.1  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4      0.14   1.1e+02      36      42 .]       1       7 [.       1       7 [. 0.93
   2 !   56.8   0.0   1.3e-18   1.1e-15       1      42 []       8      49 ..       8      49 .. 0.97
   3 !   44.0   0.0   1.4e-14   1.1e-11       1      42 []      50      91 ..      50      91 .. 0.97
   4 ?   -1.4   0.0       2.7   2.2e+03       1       7 [.      92      98 ..      92      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.14
   PF13374.1 36 lGddHPd 42
                lG++HPd
  MMETSP0890-20130614|2225_1  1 LGPNHPD 7 
                7*****8 PP

  == domain 2    score: 56.8 bits;  conditional E-value: 1.3e-18
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +l ++g+y+eA +l+e+a +i+++++G++HP+
  MMETSP0890-20130614|2225_1  8 LATWLNNLAYLLKNQGKYDEAKPLYERAIEIWEKVHGPNHPQ 49
                699**************************************5 PP

  == domain 3    score: 44.0 bits;  conditional E-value: 1.4e-14
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +l  +g+y+eA +l e++l ir++ lG++HP+
  MMETSP0890-20130614|2225_1 50 VATGLNNLAALLEIQGEYDEAKPLKERSLQIREQKLGPNHPN 91
                6888*************************************5 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 2.7
   PF13374.1  1 taaalnn 7 
                +a +lnn
  MMETSP0890-20130614|2225_1 92 VAESLNN 98
                799***9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   3.6e-14   2.9e-11      38      78 .]       1      41 [.       1      41 [. 0.96
   2 !   45.8   0.0   4.7e-15   3.8e-12       1      51 [.      47      98 ..      47      99 .] 0.98

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 3.6e-14
   PF13424.1 38 lgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                lg++hpd+a+ lnnla+l+  +g+ydeA++++e+A+ei ek
  MMETSP0890-20130614|2225_1  1 LGPNHPDLATWLNNLAYLLKNQGKYDEAKPLYERAIEIWEK 41
                69***********************************9876 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 4.7e-15
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnn 51
                hp++at lnnla +l+ +g+ydeA  l e++l++  ++lg++hp++a +lnn
  MMETSP0890-20130614|2225_1 47 HPQVATGLNNLAALLEIQGEYDEAKPLKERSLQIrEQKLGPNHPNVAESLNN 98
                899*******************************9999*************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.6   8.6e-11   6.9e-08       3      31 ..      11      39 ..       9      41 .. 0.92
   2 !   16.7   0.1   4.4e-06    0.0035       2      30 ..      52      80 ..      51      84 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 8.6e-11
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALeln 31
                 l+nl++++ ++gkydeA   ye+A+e+ 
  MMETSP0890-20130614|2225_1 11 WLNNLAYLLKNQGKYDEAKPLYERAIEIW 39
                69*************************95 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 4.4e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                  l+nl++++  +g+ydeA    e+ L++
  MMETSP0890-20130614|2225_1 52 TGLNNLAALLEIQGEYDEAKPLKERSLQI 80
                579****************8766666665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   4.6e-10   3.7e-07       1      30 [.       9      38 ..       9      38 .. 0.95
   2 !   14.3   0.1     3e-05     0.024       2      29 ..      52      79 ..      51      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 4.6e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a +l+nl++++ ++g+y+eA+ ++e+A+e+
  MMETSP0890-20130614|2225_1  9 ATWLNNLAYLLKNQGKYDEAKPLYERAIEI 38
                679*************************96 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 3e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAle 29
                 +l+nl+ +++ +g+y+eA+ + e++l+
  MMETSP0890-20130614|2225_1 52 TGLNNLAALLEIQGEYDEAKPLKERSLQ 79
                689****************977666665 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.5   2.9e-14   2.4e-11       3      68 ..       9      81 ..       7      82 .. 0.89
   2 !    6.6   0.0    0.0067       5.4      16      38 ..      64      91 ..      63      98 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 2.9e-14
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                A  l++l++ l ++g+ydeA  +ye+A+e++     pn+++    ++nlA++++ +g +y+eA    e++l+++
  MMETSP0890-20130614|2225_1  9 ATWLNNLAYLLKNQGKYDEAKPLYERAIEIWekvhgPNHPQvatGLNNLAALLEIQG-EYDEAKPLKERSLQIR 81
                56689*************************88888888888888*************.6****98888888875 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0067
   PF13414.1 16 egdydeAieayekAleld.....pnnae 38
                +g+ydeA  + e++l+++     pn+++
  MMETSP0890-20130614|2225_1 64 QGEYDEAKPLKERSLQIReqklgPNHPN 91
                79**************966666688876 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.3e-08   2.6e-05       2      32 ..      12      42 ..      10      46 .. 0.88
   2 !   14.3   0.0   2.8e-05     0.022       2      34 ..      54      86 ..      53      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.3e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
                l+nLa l  ++g+y++A  lyera+++++  
  MMETSP0890-20130614|2225_1 12 LNNLAYLLKNQGKYDEAKPLYERAIEIWEKV 42
                79*********************88887665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.8e-05
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                l+nLa l + +g+y++A  l er+L++++  l+
  MMETSP0890-20130614|2225_1 54 LNNLAALLEIQGEYDEAKPLKERSLQIREQKLG 86
                89*********************9999887665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   4.4e-07   0.00035       9      33 ..       5      29 ..       4      30 .. 0.94
   2 !   17.3   0.1   4.1e-06    0.0033       1      33 [.      31      71 ..      31      72 .. 0.86
   3 ?   -0.6   0.1       2.4   1.9e+03       9      18 ..      89      98 ..      84      98 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.4e-07
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a  +nnLA+ll+n+G+++eA+
  MMETSP0890-20130614|2225_1  5 HPDLATWLNNLAYLLKNQGKYDEAK 29
                8999*******************97 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 4.1e-06
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                lye+a+e+      Pn+   a  +nnLA ll  +G+++eA+
  MMETSP0890-20130614|2225_1 31 LYERAIEIWekvhgPNHpqvATGLNNLAALLEIQGEYDEAK 71
                799*****77777788866688888**************97 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 2.4
   PF13431.1  9 dPnnadaynn 18
                +Pn a+++nn
  MMETSP0890-20130614|2225_1 89 HPNVAESLNN 98
                6777888776 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1     2e-10   1.6e-07       3      65 .]      15      90 ..      13      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2e-10
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAa.allraal....alaPddp 65
                lA +l ++G+ydeA +++e+a++ +        P+ a  l +la +l  +g++deA     r+++    +l+P++p
  MMETSP0890-20130614|2225_1 15 LAYLLKNQGKYDEAKPLYERAIEIWekvhgpnhPQVATGLNNLAALLEIQGEYDEAKpLKERSLQireqKLGPNHP 90
                8999**************************99999*********************96666666677777777665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   2.9e-07   0.00024       4      30 ..      12      38 ..       8      38 .. 0.94
   2 !    6.5   0.0    0.0086       6.9       4      21 ..      54      71 ..      51      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.9e-07
                TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                ++nl++++++ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|2225_1 12 LNNLAYLLKNQGKYDEAKPLYERAIEI 38
                57***********************97 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0086
                TTT---HHHHTT-HHHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAk 21
                ++nl+ +++  G+yd+Ak
  MMETSP0890-20130614|2225_1 54 LNNLAALLEIQGEYDEAK 71
                899999***********8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.1e-06    0.0025       4      39 ..      11      52 ..       8      55 .. 0.81
   2 ?    7.1   0.1     0.011       9.2       4      22 ..      54      72 ..      51      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.1e-06
   PF13428.1  4 ll.alarallalGdpdeAiallrrala.....laPddaeall 39
                +l  la +l ++G +deA  l++ra++     ++P+++++ +
  MMETSP0890-20130614|2225_1 11 WLnNLAYLLKNQGKYDEAKPLYERAIEiwekvHGPNHPQVAT 52
                55379*********************9777667788777765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.011
   PF13428.1  4 llalarallalGdpdeAia 22
                l  la++l+ +G++deA  
  MMETSP0890-20130614|2225_1 54 LNNLAALLEIQGEYDEAKP 72
                5679*************76 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0025         2       6      26 .]      14      34 ..      12      34 .. 0.92
   2 !    8.3   0.0    0.0039       3.1       4      21 ..      54      71 ..      51      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0025
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                +LA +l  +G +deA  l er
  MMETSP0890-20130614|2225_1 14 NLAYLLKNQGKYDEAKPLYER 34
                89*************999987 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0039
                H---HHHHHH-------H CS
   PF07721.9  4 llaLArallalGdldeAr 21
                l +LA +l  +G++deA 
  MMETSP0890-20130614|2225_1 54 LNNLAALLEIQGEYDEAK 71
                569**************5 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.7e-05     0.046       5      28 ..      14      37 ..      14      39 .. 0.93
   2 ?    3.1   0.0      0.17   1.4e+02       7      22 ..      59      73 ..      56      79 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.7e-05
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la++++++g++deA+ ++er i+
  MMETSP0890-20130614|2225_1 14 NLAYLLKNQGKYDEAKPLYERAIE 37
                699999***************997 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.17
                HHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlea 22
                al+ + +g++deA+ +
  MMETSP0890-20130614|2225_1 59 ALLEI-QGEYDEAKPL 73
                33333.67*****965 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-05     0.012      24      77 ..       7      70 ..       2      84 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.4e-05
                HHHCHHH.HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHH CS
   PF12895.2 24 edaylya.lAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeA 77
                + a +++ lA+ l ++g+y++A  l+++      + + +++++ +     lA  l+ +g+ydeA
  MMETSP0890-20130614|2225_1  7 DLATWLNnLAYLLKNQGKYDEAKPLYERaieiweKVHGPNHPQVATglnNLAALLEIQGEYDEA 70
                667788789**********99999998899888555555888988865566788889999***9 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0077       6.2      43      77 ..      12      46 ..       4      52 .. 0.87
   2 ?    8.4   0.0     0.001      0.81      36      83 ..      47      94 ..      45      99 .] 0.86

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0077
   PF04910.9 43 LlqlsevyreqgdfevAndlieraLfilervfhps 77
                L +l+ ++++qg++ +A  l era+ i e+v  p+
  MMETSP0890-20130614|2225_1 12 LNNLAYLLKNQGKYDEAKPLYERAIEIWEKVHGPN 46
                7789*********************9999887776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.001
   PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplll 83
                +P    +L +l+ +++ qg++ +A  l er+L i e+ + p+  ++ +
  MMETSP0890-20130614|2225_1 47 HPQVATGLNNLAALLEIQGEYDEAKPLKERSLQIREQKLGPNHPNVAE 94
                7888899*****************************999988765544 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-05     0.072      17      38 ..      21      42 ..      14      50 .. 0.91
   2 ?   -1.1   0.0       1.9   1.5e+03      16      25 ..      62      71 ..      49      80 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9e-05
                HTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlqa 38
                ++gky+eA  lY+ A+e+++++
  MMETSP0890-20130614|2225_1 21 NQGKYDEAKPLYERAIEIWEKV 42
                68****************9875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.9
                HHTT-HHHHH CS
  PF04212.13 16 DeagkyeeAl 25
                + +g+y+eA 
  MMETSP0890-20130614|2225_1 62 EIQGEYDEAK 71
                5567777774 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0056       4.5      27      80 ..       8      61 ..       5      65 .. 0.75
   2 ?    3.8   0.1     0.088        71      42      75 ..      64      98 ..      55      99 .] 0.66

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0056
   PF14357.1 27 LkelrddieealeeedaseaedeslaerlneaverFea.eHPklagtlrnildsL 80
                L++  +++  +l++ + + +e ++l er  e+ e+    +HP++a  l+n++  L
  MMETSP0890-20130614|2225_1  8 LATWLNNLAYLLKN-QGKYDEAKPLYERAIEIWEKVHGpNHPQVATGLNNLAALL 61
                55556677777777.7788888888888888888886438999999999998877 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.088
   PF14357.1 42 daseaedeslaerlne.averFeaeHPklagtlrn 75
                + + +e ++l er  +   ++   +HP++a+ l+n
  MMETSP0890-20130614|2225_1 64 QGEYDEAKPLKERSLQiREQKLGPNHPNVAESLNN 98
                4445555566665444378889999****998876 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0014       1.2       7      26 ..      15      32 ..      13      38 .. 0.86
   2 ?    1.7   0.0      0.26   2.1e+02       8      20 ..      58      70 ..      55      72 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0014
                HHHHHHHTT-HHHHHHH..H CS
   PF07720.7  7 lAaefynkkkyqeArelfsY 26
                lA+ + n++ky+eA  l  Y
  MMETSP0890-20130614|2225_1 15 LAYLLKNQGKYDEAKPL--Y 32
                789999********877..5 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.26
                HHHHHHTT-HHHH CS
   PF07720.7  8 AaefynkkkyqeA 20
                Aa +  +++y+eA
  MMETSP0890-20130614|2225_1 58 AALLEIQGEYDEA 70
                6666679*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:01.51
# Mc/sec: 157.11
//
Query:       MMETSP0890-20130614|2229_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.9   6.6       0.15   12.2   3.8    1.5  1  PF11595.3 Protein of unknown function (DUF3245)
        6.1    6.1   6.2        6.6    6.0   4.3    1.1  1  PF05529.7 B-cell receptor-associated protein 31-like


Domain annotation for each model (and alignments):
>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.8   2.2e-05      0.15      82     140 ..       7      63 ..       1      78 [. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
   PF11595.3  82 gKnykkvmaekekaeakkpvaaskrkaakvakeekekakevkdddddddedesRskavg 140
                   n+kk +++k+k +a++   a   ++  +a+ ++  a ++ dd+d+d++de +++ ++
  MMETSP0890-20130614|2229_1   7 VANLKKQKSDKSKTAAQTG--AIDINKLTLAEVNALRALATADDSDSDSDDETKTELAS 63 
                 5588999999888877765..333333344444445555568*************9875 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.3   0.00097       6.6     128     185 ..       2      84 ..       1      87 [] 0.75

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00097
   PF05529.7 128 kleeklealkkqaesatkaakkl..................keekekklkeeveklkkelee.......kekdlealkkqaeg 185
                 +++ek+ +lkkq++ ++k+a+++                   ++++++++   ++ k+el++           ++ lkk  ++
  MMETSP0890-20130614|2229_1   2 RQKEKVANLKKQKSDKSKTAAQTgaidinkltlaevnalraLATADDSDSDSDDETKTELASilaigarDGAQVKKLKKENSQ 84 
                 5789999******99999999999****************9566666666666677777777666665555556666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       725  (0.0530281); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.32s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 347.47
//
Query:       MMETSP0890-20130614|2233_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-10   40.1   0.1      2e-09   36.8   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.11   10.5   0.0       0.11   10.5   0.0    1.1  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   2.9e-13     2e-09       3      39 .]       4      41 ..       2      41 .. 0.95
   2 ?    1.1   0.0     0.053   3.6e+02      17      27 ..      67      77 ..      66      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 2.9e-13
                EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                +++++rg t+ V+ v fsp+ g+++as ++D+tir+W+
  MMETSP0890-20130614|2233_1  4 QLRIFRGATAEVCHVVFSPNdGTIFASVGSDNTIRIWH 41
                5799*********************************6 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.053
                EEEESSSTEEE CS
  PF00400.27 17 vafspdgplla 27
                +a+spdg++la
  MMETSP0890-20130614|2233_1 67 LAYSPDGTVLA 77
                68999999987 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.6e-05      0.11     229     273 ..      23      69 ..       5      76 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.6e-05
   PF11715.3 229 egqtfvftlsrDgkLRvWnletgqclrttdil...eaaellpadslsy 273
                 ++ t+ +++  D+++R+W + tg+c+r +      + +  l  d l+y
  MMETSP0890-20130614|2233_1  23 NDGTIFASVGSDNTIRIWHTCTGACIREIVGTsivDGS-ELDRDVLAY 69 
                 344455599****************5544333332222.333344554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.89
# Mc/sec: 210.02
//
Query:       MMETSP0890-20130614|2227_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:01.04
# Mc/sec: 619.83
//
Query:       MMETSP0890-20130614|2232_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-52  176.5   0.0    3.7e-52  176.3   0.0    1.0  1  PF01725.11 Ham1 family
  ------ inclusion threshold ------
       0.09   12.3   0.1       0.18   11.3   0.0    1.5  1  PF01805.15 Surp module


Domain annotation for each model (and alignments):
>> PF01725.11  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.0   5.5e-56   3.7e-52       1     189 []      12     197 ..      12     197 .. 0.95

  Alignments for each domain:
  == domain 1    score: 176.3 bits;  conditional E-value: 5.5e-56
  PF01725.11   1 lvlatgNkgKlkEikailkklkievvsleeleeakieveEtgetfeenallKakaaakalgkpvlaDDsgLevdaLngaPGvysarfageeatdeannekllkelkgledrkakfvcvialadpdgk.vevfeGeveGeiaeeprgeggfGYDpiFipege..gktfAelsaeeknkiShRakAlrkllell 189
                 ++++tgN++Kl+E++ail++++ + + +  +e++ki+++E + + ee+a +K+k+aa++++++v  +D+ L+++aLng+PG+y+++f+     ++ + ++l k l+g+e+++a+++c ++l+   g+ +++f G++ G+i    rg++ fG+DpiF p++   g+t+Ae++++ekn+iShR +Al +l+++l
  MMETSP0890-20130614|2232_1  12 ITFVTGNAKKLEEVRAILERSGDDEMFPFLIENEKIDLPELQGEPEEIAQEKVKTAAEIAQSAVCCEDTLLCFEALNGLPGPYIKWFL-----NKLGHDGLNKLLTGYENKSAYAQCLFGLCAGPGQpIRIFDGRTPGKI-VPARGNNDFGWDPIFEPDESahGQTYAEMPKDEKNSISHRNRALIQLRKWL 197
                 789*******************8778889999999******9999*******************************************.....******************************77777************.699**************75545*************************9986 PP

>> PF01805.15  Surp module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.7e-05      0.18       8      39 ..      11      44 ..       8      46 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
                HHHHHH-----HHH..HHHHHH..SGGG-TTT-- CS
  PF01805.15  8 tAqfVarnGpeFea..klmareqdnpkFnFLkds 39
                ++ fV  n +  e+  ++++r++d+++F FL ++
  MMETSP0890-20130614|2232_1 11 VITFVTGNAKKLEEvrAILERSGDDEMFPFLIEN 44
                6789999999999999***************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.57
# Mc/sec: 921.36
//
Query:       MMETSP0890-20130614|2241_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-149  498.6  28.5   6.8e-148  492.8  19.8    2.2  1  PF02028.12 BCCT family transporter
    0.00099   19.5   0.5    0.00099   19.5   0.3    3.7  5  PF04749.12 PLAC8 family
  ------ inclusion threshold ------
        2.3    7.4   4.6        1.7    7.9   0.2    2.6  2  PF06570.6  Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> PF02028.12  BCCT family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.8  19.8  1.5e-151  6.8e-148       1     484 [.      38     586 ..      38     587 .. 0.91

  Alignments for each domain:
  == domain 1    score: 492.8 bits;  conditional E-value: 1.5e-151
  PF02028.12   1 vfllslliilllvllvllfpeaaeavlsslnswilenfgwfylllvllflvfllvlafsryGkiklGkddekpefstfsWfamlfsaGlgigllfwgvaEplyhfaspppgg...eagteeaaqeAlaytffhWGlhaWaiYalvglalayfayrkglpltissalypllger.iegplgkvvDilavlatvfGvatslGlgvlqiaaglselfg...............iensltvqlliivvitvlatvsavsGldkGikrLSnlnlvlallLllfvlllGptlfllntfveslgdylqnfvalslatdaaeeae............ewladWtvFYWaWwiawapfvGlFiARiSrGRtirefilgvllvpslvtfvwfsvlGgtai..............................elelegeaelaeaveadveaalfalleql...plssilsilavvliitffvtsaDSatlvlatltsggdenpprkqrvfWgvllgavalvlllagg...leaLqsasiiaalPfalvlllmlvsllkalkk 484
                 v++l++++i+++v+++++ +++a + ++ + +wi +++ w+y+ +  +++++ll+lafs+y+k+klG dde+pefs++sWfamlf+aG+g+gl+++gv+Ep++h++sp+ g    + + +++aq+Al++tffhWG+h+W  Y+++g  la ++yr+g p+ti+s++ pllg++ ++g++g+ +D+++++at+fGv+tslGlgv+q+++ l ++                 i+ s+  q++ii+++t++at+s+vsGl+ Gi+ LSn+ + l ++L+l vl++G+t+ +ln++++++g yl  ++++s +tda e+a+            +w+++Wt+FYW+Wwi+wapfvG+FiA+iSrGRt+ efi+g+l++p++ +++wf vlG+ +i                              ++e++++ ++      + + +lf ll+++   +++ + s+++ ++++++fvts+DS++lv+++++++gde+pp  qr+fW++++ga a +ll +g+   l aLqs+si+++lP++++l++ +v+ll ++++
  MMETSP0890-20130614|2241_1  38 VTVLAAGVIWGFVAFTVAHEDSAYNEFTDWAAWIGDEWTWLYIGSQDIWILVLLYLAFSKYAKLKLGADDEEPEFSRLSWFAMLFAAGVGVGLFYYGVTEPIWHYTSPA-GRwydSLNDNDRAQHALMVTFFHWGFHGWIPYTTIGSLLAIMSYRRGYPMTIRSTFVPLLGDKvLSGVVGDSIDVMSICATLFGVCTSLGLGVQQLNTALVRIDRgtyagidkreegrldIQYSTRAQIIIIWFVTCMATLSVVSGLKAGIQLLSNITFGLGCFLILCVLFMGDTVVILNSITSAFGYYLWYLPKISWHTDAWEQADdslapdgeggssTWMGGWTIFYWGWWISWAPFVGTFIAKISRGRTLGEFIAGTLIIPTAYCILWFGVLGSEGIyrerqaeklgldcsnsfsevrstrlgedgwQAEHNSAYDFRV-SCLGLNDQLFDLLSAYgsrTMAYFSSTITAIILVLYFVTSSDSGSLVIDSIAANGDEEPPILQRIFWACTEGAAAHALLKTGKvraLRALQSVSIVTGLPYTFILCYQCVALLNVVQE 586
                 67899*****************************************************************************************************965.3335467777888************************************************8549*************************************9965777766666666555559999***************************************************************************998888999*********************************************************************777777777777777666665555554443333333333333.5566777888888888999999999**********************************************************999**************************998876 PP

>> PF04749.12  PLAC8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.9   8.7e+03      11      33 ..     221     242 ..     214     257 .. 0.67
   2 ?   -0.6   0.1      0.38   1.7e+03      17      56 ..     277     317 ..     259     341 .. 0.56
   3 ?   -0.2   0.0      0.29   1.3e+03      43      80 ..     398     437 ..     370     449 .. 0.63
   4 ?   -3.9   0.1         3   1.4e+04      92      98 ..     572     578 ..     537     585 .. 0.64
   5 !   19.5   0.3   2.2e-07   0.00099      16     106 .]     626     736 ..     619     736 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.9
  PF04749.12  11 diglcllslfcpcvlfgknaerl 33 
                  +++c  +lf  c ++g   ++l
  MMETSP0890-20130614|2241_1 221 VMSIC-ATLFGVCTSLGLGVQQL 242
                 44555.67777776666555555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.38
  PF04749.12  17 lslfcpcvlfgknaerlgngsksehsa.lgscllaflllgl 56 
                 + +f++c++   + + l+ g +      +g+ ++ +l++++
  MMETSP0890-20130614|2241_1 277 IIWFVTCMATLSVVSGLKAGIQLLSNItFGLGCFLILCVLF 317
                 44446666666666666555433332232222222222222 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.29
  PF04749.12  43 algscllaflllgllall.allll.ysallRtkiRekyni 80 
                 +lg+ ++++l++ +++++ ++++l  ++++R +  ek ++
  MMETSP0890-20130614|2241_1 398 TLGEFIAGTLIIPTAYCIlWFGVLgSEGIYRERQAEKLGL 437
                 3567777777777776664445554449999988887776 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 3
  PF04749.12  92 lfcppca 98 
                 ++c+ c+
  MMETSP0890-20130614|2241_1 572 ILCYQCV 578
                 2444443 PP

  == domain 5    score: 19.5 bits;  conditional E-value: 2.2e-07
  PF04749.12  16 llslfcpcvlfgknaerlgngsksehsa.....lgscllaflllglla.........ll..al..lll.ysallRtkiRekyni.egsacdDclvhlfcppcalcQesrel 106
                 +  +f+p+v + k+a+++++ +++ +s+     +g  +++++ +++l+         ++  +l  ++  + +l+R   R+  n  +gs + D+l  ++c+p++l+  + el
  MMETSP0890-20130614|2241_1 626 VTYCFMPFVGVYKIANKISDLKNEPKSMlpgpaVGAFFFWVFAWVMLCmspvaanlrMVagVLyiFFAgIVGLMRYFARDAINCkRGSLFSDLLSAVLCYPFVLMHTDTEL 736
                 34567************999887777779999955555555555555566767787733443343566566*************4559****************9988876 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.12   5.5e+02     139     174 ..     293     329 ..     262     338 .. 0.71
   2 ?    7.9   0.2   0.00037       1.7     112     198 ..     622     705 ..     609     711 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.12
   PF06570.6 139 kkkrppiwkrllilllivvvwlvlftlvsl.lpkviN 174
                  k  ++++  +++ l+ ++++ vlf+  ++ + ++i+
  MMETSP0890-20130614|2241_1 293 LKAGIQLLSNITFGLGCFLILCVLFMGDTVvILNSIT 329
                 4455677888888999999999999998887777776 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00037
   PF06570.6 112 litlllvslvgGlamvyvyriltrskkkkkrppiwkrllilllivvvwlvlftlvsllpkviNpvL.pplvliiigvvalvvryylkk 198
                 + +++   ++  + ++++++ ++    + k +p        ++++++w+++ +++ + p   N ++   +++i  + +++ +ry+ + 
  MMETSP0890-20130614|2241_1 622 ICSFVTYCFMPFVGVYKIANKIS----DLKNEPKSMLPGPAVGAFFFWVFAWVMLCMSPVAANLRMvAGVLYIFFAGIVGLMRYFARD 705
                 55555555544444444444443....2333333334456789999*****************99978999*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.35s 00:00:01.48 Elapsed: 00:00:01.89
# Mc/sec: 973.76
//
Query:       MMETSP0890-20130614|2243_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-30  105.6   0.0    1.4e-30  105.5   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    1.3e-10   40.7   0.0    4.7e-05   22.9   0.0    2.4  2  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
      0.083   12.9   1.1       0.57   10.3   0.1    2.6  2  PF05593.9 RHS Repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   3.1e-34   1.4e-30       3      98 ..       2      97 ..       1      98 [] 0.91

  Alignments for each domain:
  == domain 1    score: 105.5 bits;  conditional E-value: 3.1e-34
   PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigss 98
                Ig+ aF++c++lt++ +p  +t+Ig yaFs+c+sl+++t+p  lt+ig+y F +c+slt++t+p  +t+ige+aF  c+sl++i++p s+t i s+
  MMETSP0890-20130614|2243_1  2 IGDGAFEDCTSLTQLIMPAGLTTIGGYAFSGCRSLTHLTMPAGLTTIGNYTFHGCTSLTQLTLPAGFTEIGEWAFFLCTSLTQITLPDSITDICSD 97
                899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     1e-08   4.7e-05      16      56 ..       2      41 ..       1      44 [. 0.96
   2 !   15.6   0.0   1.9e-06    0.0087      13      56 ..      45      87 ..      42      91 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1e-08
   PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                i+dgaF+++++L+ L      l++i   af+g++sL++L +
  MMETSP0890-20130614|2243_1  2 IGDGAFEDCTSLTQLIMP-AGLTTIGGYAFSGCRSLTHLTM 41
                899***************.********************86 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.9e-06
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i++ +F+g+++L+ L L     ++i + af  ++sL+++ L
  MMETSP0890-20130614|2243_1 45 LTTIGNYTFHGCTSLTQLTLP-AGFTEIGEWAFFLCTSLTQITL 87
                899******************.9999999999*******99988 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00013      0.57       7      36 ..      36      67 ..      11      69 .. 0.84
   2 ?   -0.7   0.0      0.35   1.6e+03      28      35 ..      82      89 ..      81      92 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
   PF05593.9  7 LtevtdatGrvt.t.YtYDaaGrlTaltdpdG 36
                Lt+ t + G +t   Yt  +   lT+lt p+G
  MMETSP0890-20130614|2243_1 36 LTHLTMPAGLTTiGnYTFHGCTSLTQLTLPAG 67
                78888899999995599999999999999888 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.35
   PF05593.9 28 lTaltdpd 35
                lT++t pd
  MMETSP0890-20130614|2243_1 82 LTQITLPD 89
                67777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 378.78
//
Query:       MMETSP0890-20130614|2244_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-05   22.6   0.6    0.00022   20.4   0.0    2.3  2  PF14307.1 Glycosyltransferase WbsX


Domain annotation for each model (and alignments):
>> PF14307.1  Glycosyltransferase WbsX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1     0.034   4.7e+02     265     286 ..      41      62 ..      19      76 .. 0.72
   2 !   20.4   0.0   1.6e-08   0.00022     266     338 ..     268     335 ..     150     339 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.034
   PF14307.1 265 kkvypgvvpgwDntpRkgkkal 286
                  ++ ++v+p+wD + R++ +++
  MMETSP0890-20130614|2244_1  41 IHWDHSVLPHWDTRVREKYRDM 62 
                 4455678889999999887765 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.6e-08
   PF14307.1 266 kvypgvvpgwDntpRkgkkalv.lknstpekFkkaleeaiervkkkeeeeklvfinaWNEWaEgayLePdekyg 338
                  +  ++ pg+ +t  + ++++   ++++ + F++ l++ai+      ++ +++ i + NEW+Eg+ +eP + y 
  MMETSP0890-20130614|2244_1 268 ILSISLGPGYNDTKIRPWNSIAtRDRRQGAYFQAQLNKAIA------ADPDIISITSFNEWGEGTQIEPAQPYP 335
                 33344456665554444444440344445556666666663......4889******************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.87
# Mc/sec: 1030.16
//
Query:       MMETSP0890-20130614|2246_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   17.5   0.1      0.077   12.8   0.0    2.8  3  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.092   12.5   0.0    1.9  2  PF13374.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.11   7.4e+02      52      71 ..      58      77 ..      55      81 .. 0.73
   2 ?    0.3   0.0     0.091   6.2e+02      25      35 ..     119     130 ..      98     143 .. 0.63
   3 !   12.8   0.0   1.1e-05     0.077      10      45 ..     149     185 ..     141     191 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.11
   PF13424.1 52 lanlylalgdydeAleylek 71
                ++n++   + +++A+++ ++
  MMETSP0890-20130614|2246_1 58 IGNILICTEHHQAAIDLSRR 77
                77777777888888877665 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.091
   PF13424.1  25 lelyekalel.l 35 
                  +++eka +l +
  MMETSP0890-20130614|2246_1 119 YAYIEKAEQLmR 130
                 456677777633 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 1.1e-05
   PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdt 45 
                  l  +l+ +++y eA +++  +le  +r++g+ hp t
  MMETSP0890-20130614|2246_1 149 LLCRILMYQKKYTEANQILSPCLEKaQRVFGPSHPLT 185
                 678999****************************975 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.94   6.5e+03      14      26 ..      64      76 ..      58      77 .. 0.58
   2 ?   12.5   0.0   1.3e-05     0.092      11      41 ..     153     183 ..     148     184 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.94
   PF13374.1 14 argryeeAlalee 26
                 +  +++A +l +
  MMETSP0890-20130614|2246_1 64 CTEHHQAAIDLSR 76
                5566667766654 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.3e-05
   PF13374.1  11 alrargryeeAlaleeealairrrllGddHP 41 
                 +l+ +++y eA +++  +l+  +r++G+ HP
  MMETSP0890-20130614|2246_1 153 ILMYQKKYTEANQILSPCLEKAQRVFGPSHP 183
                 7899**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:01.23
# Mc/sec: 389.65
//
Query:       MMETSP0890-20130614|2247_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 471.90
//
Query:       MMETSP0890-20130614|2240_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00033   19.9   2.1    0.00074   18.8   1.5    1.5  1  PF04478.7 Mid2 like cell wall stress sensor
    0.00039   20.0   0.0    0.00085   18.9   0.0    1.5  1  PF06365.7 CD34/Podocalyxin family
     0.0017   18.2   0.3     0.0035   17.2   0.2    1.5  1  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)
     0.0045   16.6   0.8      0.027   14.1   0.5    2.4  2  PF12575.3 Protein of unknown function (DUF3753)
  ------ inclusion threshold ------
       0.04   13.4   0.3      0.067   12.7   0.2    1.2  1  PF04610.9 TrbL/VirB6 plasmid conjugal transfer protein
      0.069   13.0   1.3      0.096   12.6   0.3    1.7  2  PF13800.1 Sigma factor regulator N-terminal
        2.8    8.1   8.7       0.59   10.2   0.4    2.7  3  PF13786.1 Domain of unknown function (DUF4179)


Domain annotation for each model (and alignments):
>> PF04478.7  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.5   3.8e-07   0.00074      12      86 ..     487     563 ..     479     567 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.8e-07
   PF04478.7  12 iegktiLsdsyttitytptataspskks.kehGLskknkniviGcvvGigvPlllv.ilvliyifCikekrtdfids 86 
                 i ++ i s+  t i +tp++ +  ++++ k++   ++n  i+i ++v i++ +ll    +++y  C  ++ t  i+ 
  MMETSP0890-20130614|2240_1 487 IVIVDINSQGVTVIDVTPSDNNVNDEEDaKKDKKKSRNNTIIIIVIVLICAIILLSaAFFVVYRCCFSSSATKSINN 563
                 55677889999********999555444044456667888999999999998887615678999********99986 PP

>> PF06365.7  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.4e-07   0.00085      84     138 ..     507     565 ..     489     578 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.4e-07
   PF06365.7  84 lkeqdssskeekedk....lpllialvtlgaillLiialltlYclhqRrsqkkkqqrlg 138
                  + +d++++++ ++k    + ++i++v ++ai+lL +a + +Y +    s +k+ +  +
  MMETSP0890-20130614|2240_1 507 NNVNDEEDAKKDKKKsrnnTIIIIVIVLICAIILLSAAFFVVYRCCFSSSATKSINNKT 565
                 44555555444444444544489999*****************9998888888766655 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.8e-06    0.0035      45      89 ..     507     551 ..     490     567 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
   PF06024.7  45 knditeeesk.aekaqatnillisllavlcvlvllyviyYFvilre 89 
                 +n  +ee++k  +k++  n+++i++++++c ++ll    +Fv+ r 
  MMETSP0890-20130614|2240_1 507 NNVNDEEDAKkDKKKSRNNTIIIIVIVLICAIILL-SAAFFVVYRC 551
                 33333333331455555666666666666665555.5578888876 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.7   5.3e+03       7      31 ..     377     401 ..     376     407 .. 0.81
   2 !   14.1   0.5   1.4e-05     0.027      33      66 ..     511     543 ..     507     549 .. 0.47

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.7
   PF12575.3   7 aifGvflsssddDfeeFidvvksVL 31 
                 a+ G  l+s    +  Fi  + ++L
  MMETSP0890-20130614|2240_1 377 AVQGISLQSAQAHLSSFISAIENIL 401
                 5667778888888999999999988 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.4e-05
   PF12575.3  33 dkkklkkkkensssniiiliiliiivvivvllvf 66 
                 d++++kk k++s +n +i+ii+i+++  ++ll  
  MMETSP0890-20130614|2240_1 511 DEEDAKKDKKKSRNN-TIIIIVIVLICAIILLSA 543
                 666656655544444.344444444444444433 PP

>> PF04610.9  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.4e-05     0.067      36     124 ..     446     548 ..     437     553 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.4e-05
   PF04610.9  36 alatnwgayasavvdsfaglgeaa.agalggggssvaatldsl....lnkgldvaqel.........wseassllssg.........igaallgllallgvllllflaavvl 124
                 a +t+ ++  +a+v+++++l ++   +al  ++s+++++++ +     ++g++v++                     +           ++++++++l+++++ll  a++v+
  MMETSP0890-20130614|2240_1 446 ATITTLPQHLDAIVNTITNLNSQTiLSALRDADSDFFSQPNIVivdiNSQGVTVIDVTpsdnnvndeE---------DakkdkkksrNNTIIIIVIVLICAIILLSAAFFVV 548
                 557888999**********6655557888999999999999983332345555555556666655440.........14444455668888999999999999988888764 PP

>> PF13800.1  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.6     9e+03      60      67 ..     482     489 ..     458     498 .. 0.71
   2 ?   12.6   0.3   4.9e-05     0.096       5      44 ..     515     554 ..     511     574 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4.6
   PF13800.1  60 ltePNvei 67 
                 +++PN+ i
  MMETSP0890-20130614|2240_1 482 FSQPNIVI 489
                 78999876 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4.9e-05
   PF13800.1   5 lkkaKrksilritvlsvilllliviililisllyygvaks 44 
                  kk K+ks+   ++++vi+l+  +i+l+   +++y++  s
  MMETSP0890-20130614|2240_1 515 AKKDKKKSRNNTIIIIVIVLICAIILLSAAFFVVYRCCFS 554
                 5999*****9988888888888888888888888887666 PP

>> PF13786.1  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.08   1.6e+02      20      61 ..     377     415 ..     367     422 .. 0.75
   2 ?   -2.9   0.1       3.9   7.6e+03      35      71 ..     458     498 ..     438     499 .. 0.48
   3 ?   10.2   0.4    0.0003      0.59       1      46 [.     516     564 ..     516     584 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.08
   PF13786.1  20 ivllistpafAknipvvksifnllnkdkgiekaleegysqei 61 
                 +v +is  ++ + +   +s+ ++++++ gi+  ++ ++s+e+
  MMETSP0890-20130614|2240_1 377 AVQGISLQSAQAHL---SSFISAIENILGIQAQVDIDFSEET 415
                 45555555555555...9***************998999875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.9
   PF13786.1  35 vvksifnllnkd.kgiekaleegysqeink...svtdnGit 71 
                 +v+ i+nl ++      +++++++ ++ n     + ++G+t
  MMETSP0890-20130614|2240_1 458 IVNTITNLNSQTiLSALRDADSDFFSQPNIvivDINSQGVT 498
                 46666666442224445555566666666633344456655 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.0003
   PF13786.1   1 kkikkkkkkkkkiaaaaalivllis.tpafAknip..vvksifnllnkd 46 
                 kk kkk++ ++ i+++++li+++i  + af   +   + +s ++++n++
  MMETSP0890-20130614|2240_1 516 KKDKKKSRNNTIIIIVIVLICAIILlSAAFFVVYRccFSSSATKSINNK 564
                 5779999999999999888887766467777777766555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       993  (0.0726302); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:01.44
# Mc/sec: 976.85
//
Query:       MMETSP0890-20130614|2245_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-14   53.7   0.7    3.4e-14   52.6   0.5    1.6  1  PF13499.1  EF-hand domain pair
    8.7e-13   46.4   2.3    6.7e-08   31.1   0.2    2.6  2  PF00036.27 EF hand
    3.2e-12   46.1  10.6    4.4e-12   45.6   7.3    1.2  1  PF01699.19 Sodium/calcium exchanger protein
    2.4e-11   42.3   2.4    6.4e-05   22.3   0.2    2.9  2  PF13405.1  EF-hand domain
    4.8e-09   35.0   3.8    1.6e-06   27.0   0.2    2.6  2  PF13202.1  EF hand
    8.7e-09   34.7   4.5    2.7e-06   26.8   0.1    2.5  2  PF13833.1  EF-hand domain pair
    0.00011   22.1   0.4    0.00019   21.3   0.0    1.6  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
    0.00072   18.7   0.1     0.0012   18.1   0.0    1.2  1  PF08743.5  Nse4
     0.0081   15.6   1.7     0.0081   15.6   1.2    1.6  2  PF04546.8  Sigma-70, non-essential region
  ------ inclusion threshold ------
       0.02   14.4   1.7      0.049   13.2   1.2    1.6  1  PF06993.7  Protein of unknown function (DUF1304)
      0.047   13.3   0.1        0.1   12.2   0.1    1.6  1  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.5   2.8e-17   3.4e-14       5      64 ..      44      99 ..      26     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 2.8e-17
   PF13499.1  5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64
                 Fk++D d++g++d+ e  rll hlg    ++ +++ +  +f+e+D+n+dG ++f+Ef++
  MMETSP0890-20130614|2245_1 44 FFKMFDNDNNGSIDQFEAGRLLEHLG----EKVSQNRIKSLFQEMDSNKDGHIDFDEFVT 99
                5*************************....88888888888*****************97 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   9.6e-06     0.012       5      26 ..      44      65 ..      40      68 .. 0.81
   2 !   31.1   0.2   5.4e-11   6.7e-08       2      28 ..      77     103 ..      76     104 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.6e-06
                HHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  5 aFkefDkDgdGkIsfeEfkeal 26
                +Fk+fD D++G I+  E  ++l
  MMETSP0890-20130614|2245_1 44 FFKMFDNDNNGSIDQFEAGRLL 65
                7*************87766655 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 5.4e-11
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 +k +F+e+D ++dG+I+f+Ef++ l+k
  MMETSP0890-20130614|2245_1  77 IKSLFQEMDSNKDGHIDFDEFVTGLAK 103
                 7899*******************9987 PP

>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   7.3   3.6e-15   4.4e-12       1     137 [.     169     300 ..     169     302 .. 0.94

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 3.6e-15
  PF01699.19   1 llislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkg...agdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivllsdgrltvweglvllllyilylv 137
                 +++ +++d +v+ +++i++ +++s+  + ++l +l+++a Elis+  +alk+   ++ ++ +s+ G+a +n ++ + + ++++ ++       l + +t++   +l+v +l+ li++  +++ t+ ++++ l++y+l + 
  MMETSP0890-20130614|2245_1 169 IIVLIFSDPMVDVMSEIGRRIQISPFYVSFVLAPLASNASELISAFNFALKKtpkTITISYASLEGAACMNNTFALSIFFMLIFFR------GLAWAYTAETISILIVQILMALIAF--KRKQTLADAALVLSFYPLSIA 300
                 578899*********************************************8888****************************997......58999999999999998********..*****************9876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   7.4e-07   0.00092       5      30 ..      44      68 ..      41      69 .. 0.89
   2 !   22.3   0.2   5.2e-08   6.4e-05       1      27 [.      76     102 ..      76     110 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.4e-07
                --GCC-------B---HHHHHHH.H- CS
   PF13405.1  5 aFklfDkdgdGkidaeELrdaLrksl 30
                +Fk+fD+d++G id+ E +++L   l
  MMETSP0890-20130614|2245_1 44 FFKMFDNDNNGSIDQFEAGRLLE-HL 68
                8****************999998.55 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 5.2e-08
                 HHH---GCC-------B---HHHHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                 +++++F+ +D ++dG id++E++  L 
  MMETSP0890-20130614|2245_1  76 RIKSLFQEMDSNKDGHIDFDEFVTGLA 102
                 689*******************98776 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00081         1       4      23 ..      44      63 ..      40      65 .. 0.82
   2 !   27.0   0.2   1.3e-09   1.6e-06       1      23 [.      77      99 ..      77     102 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00081
                HHHHH--S----B-HHHHHH CS
   PF13202.1  4 tFrafDlNgDGkIsreELkr 23
                +F+ fD ++ G I+  E  r
  MMETSP0890-20130614|2245_1 44 FFKMFDNDNNGSIDQFEAGR 63
                7*************877555 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 1.3e-09
                HHHHHHHH--S----B-HHHHHH CS
   PF13202.1  1 lkdtFrafDlNgDGkIsreELkr 23
                +k++F+++D N+DG I+++E+ +
  MMETSP0890-20130614|2245_1 77 IKSLFQEMDSNKDGHIDFDEFVT 99
                6889*****************76 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.4   0.00052      0.64      30      46 ..      44      60 ..      38      68 .. 0.86
   2 !   26.8   0.1   2.1e-09   2.7e-06      17      53 ..      68     103 ..      61     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00052
   PF13833.1 30 lfrefDtdgdGkisfeE 46
                 f++fD d++G i++ E
  MMETSP0890-20130614|2245_1 44 FFKMFDNDNNGSIDQFE 60
                69************998 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 2.1e-09
   PF13833.1  17 lglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                 lg k +s + +  lf e+D ++dG i+f+EF++ l++
  MMETSP0890-20130614|2245_1  68 LGEK-VSQNRIKSLFQEMDSNKDGHIDFDEFVTGLAK 103
                 3566.8888899********************99875 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.6e-07   0.00019      25     111 ..      11      98 ..       1     100 [. 0.81
   2 ?   -2.4   0.1       3.4   4.2e+03      23      42 ..     108     127 ..     101     144 .. 0.41

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.6e-07
   PF10591.4  25 aqlkerdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                  ++ +++ +    + +++ ++++ +++  + v+  F+ +D ++++++++ E   l ++l     ++ ik++f++ D +kd++i+++E+ 
  MMETSP0890-20130614|2245_1  11 IRSTQAEYQA-VASPKAHDKNSEAYARLAQIVRPFFKMFDNDNNGSIDQFEAGRLLEHLgeKVSQNRIKSLFQEMDSNKDGHIDFDEFV 98 
                 4444444443.5666777778889999999*******************999999998876567788********************97 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.4
   PF10591.4  23 vlaqlkerdeekehseelek 42 
                    +++e+++++ + e++++
  MMETSP0890-20130614|2245_1 108 AIDTIEEEESSSVSGENKNN 127
                 44444444444411111111 PP

>> PF08743.5  Nse4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.4e-07    0.0012      69     149 ..      80     169 ..      70     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 9.4e-07
   PF08743.5  69 kakkltlgelngidvdeFvsklisfmgrgteedeeaedsstqr......eedsdd...dsgdlldWakLgrlac.khvrrppvsgfllGpl 149
                   +++ +++ + id deFv+ l ++++++++  ee+e+ss++       + d ++   ++   ++ a L+ + + ++++r ++++ +lG +
  MMETSP0890-20130614|2245_1  80 LFQEMDSNKDGHIDFDEFVTGLAKYLQNAIDTIEEEESSSVSGenknnnD-DTSEeieEEEIPSELAGLSPAQQqSIIKRRALFKLMLGTI 169
                 556777777889*************************9999988988743.33335867777899999**999999************987 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4     3e+03     105     122 ..      27      44 ..      12      70 .. 0.63
   2 !   15.6   1.2   6.5e-06    0.0081       5      78 ..      77     158 ..      75     165 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.4
   PF04546.8 105 skkaekareelaeefksf 122
                 + k  +a + la+++++f
  MMETSP0890-20130614|2245_1  27 HDKNSEAYARLAQIVRPF 44 
                 333444444444444333 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6.5e-06
   PF04546.8   5 iaelleqydrveagelrlsdlisGfidpaaaaeeeeaeeeseddeeeeeddddddededeee........eseeadegpdpe 78 
                 i++l++++d  ++g +  +++++G+ +  ++a ++ +eees + + e+++++dd  +e eee         s ++++++ + 
  MMETSP0890-20130614|2245_1  77 IKSLFQEMDSNKDGHIDFDEFVTGLAKYLQNAIDTIEEEESSSVSGENKNNNDDTSEEIEEEeipselagLSPAQQQSIIKR 158
                 88999***********************666777777777777777777755555555444446666666555555555555 PP

>> PF06993.7  Protein of unknown function (DUF1304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.2   3.9e-05     0.049      70     108 ..     241     279 ..     225     281 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.9e-05
   PF06993.7  70 glalvlffllcvlvaaiygaltask.killvQglpallal 108
                 ++al +ff + +++ +++ a+ta++ +il+vQ l+al+a+
  MMETSP0890-20130614|2245_1 241 TFALSIFF-MLIFFRGLAWAYTAETiSILIVQILMALIAF 279
                 45555555.567899********777************96 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.3e-05       0.1      38      68 ..      70     100 ..      37     121 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.3e-05
   PF12763.2  38 skleedklekiwdladidedgkldfeefcia 68 
                  k+++++++++++  d ++dg++df+ef+  
  MMETSP0890-20130614|2245_1  70 EKVSQNRIKSLFQEMDSNKDGHIDFDEFVTG 100
                 588999**********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1023  (0.0748245); expected 273.4 (0.02)
Passed bias filter:                      549  (0.0401551); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 876.78
//
Query:       MMETSP0890-20130614|2248_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       905  (0.0661937); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.75
# Mc/sec: 1281.25
//
Query:       MMETSP0890-20130614|2249_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-09   36.2   0.0     0.0026   17.6   0.0    2.1  2  PF13304.1  AAA domain
    2.4e-05   24.5   0.0    0.00011   22.4   0.0    2.0  1  PF00005.22 ABC transporter
    0.00047   19.5   0.1    0.00084   18.7   0.1    1.4  1  PF13555.1  P-loop containing region of AAA domain
      0.001   18.4   0.0     0.0017   17.6   0.0    1.5  1  PF13481.1  AAA domain
     0.0049   17.1   0.2     0.0084   16.3   0.1    1.5  1  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.015   14.3   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
      0.012   15.0   0.0       0.02   14.2   0.0    1.3  1  PF01580.13 FtsK/SpoIIIE family
      0.017   15.7   0.0      0.039   14.6   0.0    1.6  1  PF13207.1  AAA domain
      0.021   13.7   0.0        1.5    7.6   0.0    2.1  2  PF13175.1  AAA ATPase domain
      0.022   14.2   0.6       0.31   10.4   0.1    2.2  2  PF05729.7  NACHT domain
      0.023   14.4   0.0       0.18   11.6   0.0    2.1  2  PF13173.1  AAA domain
      0.052   13.3   0.0       0.12   12.2   0.0    1.7  1  PF13521.1  AAA domain
      0.052   12.6   0.1      0.083   12.0   0.1    1.3  1  PF00025.16 ADP-ribosylation factor family
      0.055   12.5   0.1        7.6    5.5   0.0    2.1  2  PF02463.14 RecF/RecN/SMC N terminal domain
      0.069   12.4   0.1       0.11   11.8   0.1    1.2  1  PF00448.17 SRP54-type protein, GTPase domain
      0.083   12.9   0.1        0.9    9.6   0.1    2.2  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.11   11.0   0.0       0.15   10.5   0.0    1.1  1  PF02456.10 Adenovirus IVa2 protein
       0.11   10.8   0.0       0.15   10.3   0.0    1.1  1  PF13166.1  AAA domain
       0.11   11.2   0.0       0.17   10.6   0.0    1.2  1  PF05673.8  Protein of unknown function (DUF815)
       0.11   12.6   0.0       0.18   12.0   0.0    1.2  1  PF13476.1  AAA domain
       0.13   12.1   0.1       0.17   11.8   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
       0.19    8.8   0.1       0.27    8.4   0.1    1.1  1  PF12128.3  Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.2e-06    0.0057       3      20 ..      40      57 ..      39      66 .. 0.91
   2 !   17.6   0.0   4.1e-06    0.0026     229     297 ..     137     203 ..     106     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 9.2e-06
   PF13304.1  3 viiGpNgsGKSnlLkald 20
                ++ G+Ng+GKS+lL++l+
  MMETSP0890-20130614|2249_1 40 LLLGANGAGKSTLLRVLA 57
                689*************97 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 4.1e-06
   PF13304.1 229 ggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliell.kelsnggsQlifTTH 297
                 + +  ++ +SdG++r   ll+ l +     ++ll+DE+ + L+  + + l+ +l ke+++++++++ +TH
  MMETSP0890-20130614|2249_1 137 DPDWRMHKVSDGQRRRVQLLLGLVRPF---DILLLDEVTTCLDVIVRQDLLFWLqKETETRRATVVYATH 203
                 555567889******************...**************9999999899555555********** PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.8e-07   0.00011      65     118 .]     123     173 ..      50     173 .. 0.54

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.8e-07
                 -HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  65 tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                   +r +e++  +g+d   d  r++++S Gq++rv+l   l++  ++llLDE t+
  MMETSP0890-20130614|2249_1 123 YPERRDELMGILGVDP--D-WRMHKVSDGQRRRVQLLLGLVRPFDILLLDEVTT 173
                 4455555555555555..3.489****************************985 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.3e-06   0.00084      17      40 ..      31      53 ..      25      63 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.3e-06
   PF13555.1 17 veidpkgkntlltGasGsGKSTll 40
                ++++p  + +ll Ga+G+GKSTll
  MMETSP0890-20130614|2249_1 31 MQLAPG-SRCLLLGANGAGKSTLL 53
                566655.489*************8 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-06    0.0017      16      58 ..      16      61 ..       2     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.7e-06
   PF13481.1 16 dtppppldwlvkg...llprgsltllaGapgtGKStlalqlaaava 58
                + p p  + ++kg    l++gs +ll Ga g+GKStl+  la+  +
  MMETSP0890-20130614|2249_1 16 SLPDPDARAILKGlnmQLAPGSRCLLLGANGAGKSTLLRVLAGKHL 61
                45778899999986666789******************88887665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.4e-05    0.0084      20      59 ..      33      68 ..      21     159 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-05
   PF13191.1 20 segsplllvtGpsGiGKSsLlrelakpillerlrfaagkf 59
                 ++++ +l++G+ G GKS+Llr     ++ ++l +  g +
  MMETSP0890-20130614|2249_1 33 LAPGSRCLLLGANGAGKSTLLRV----LAGKHLTKPDGAV 68
                344438****************9....3344444444444 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.4e-05     0.015      27      59 ..      27      60 ..      10     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.4e-05
                HHHHHHCTT.SBEEEE-------HHHHHHH---- CS
  PF03193.11 27 eelaellkd.ktsvlvGqSGvGKSsLinallpel 59
                + l+ +l+  +  +l+G  G+GKS+L+ +l++++
  MMETSP0890-20130614|2249_1 27 KGLNMQLAPgSRCLLLGANGAGKSTLLRVLAGKH 60
                566777776678899***************9988 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.2e-05      0.02      33      77 ..      31      74 ..      17      85 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.2e-05
  PF01580.13 33 adlvkaphlLiaGatgsGKStflrtLilslaathtPeevqlyliD 77
                ++l++  + L +Ga+g+GKSt lr+L    ++ +    v+++ +D
  MMETSP0890-20130614|2249_1 31 MQLAPGSRCLLLGANGAGKSTLLRVLAGKHLT-KPDGAVKVMGLD 74
                667777799*****************988887.344567777776 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.2e-05     0.039       4     105 ..      41     176 ..      38     196 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.2e-05
                 -B--TT---HHHHHHHHHH..........................................STEEEEEGGGB--GGGS-.B-----B--SSGGGB-HHHHHHHH....H..HHHHHH....TTS.-----------EEEEE----TTGGT CS
   PF13207.1   4 itGppGsGKsTlakeLaer..........................................lglpvlslddllreeglk.elddgereskdadadllaaildglaakkdtlswvidg....ale.seldlrleeadeiiyldaplpecrk 105
                 + G+ G+GKsTl + La +                                          +g+p ls d   r+ ++  +l+d+ +e++d+  ++l   +d++        w ++     ++  + l l l + + i+ ld + + c++
  MMETSP0890-20130614|2249_1  41 LLGANGAGKSTLLRVLAGKhltkpdgavkvmgldafrdlrlnmvrafldtqwgmrtvafagYGCP-LSADI--RVGDMMqKLQDTYPERRDELMGILG--VDPD--------WRMHKvsdgQRRrVQLLLGLVRPFDILLLDEVTT-CLD 176
                 6699************9976777777777777777777777777777777777777776666777.56666..6666665666666566554444444..5555........6666644442222222233444444444444444.444 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0025       1.5      25      42 ..      34      56 ..      11      82 .. 0.79
   2 ?    4.0   0.0     0.029        18     372     411 ..     165     204 ..     158     205 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0025
   PF13175.1 25 n.....viiGeNgsGKttILeal 42
                +     ++ G+Ng+GK+t+L  l
  MMETSP0890-20130614|2249_1 34 ApgsrcLLLGANGAGKSTLLRVL 56
                36666689************988 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.029
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiitTHs 411
                 Ill+DE  + l++ ++++ll  L++ +     +++++TH+
  MMETSP0890-20130614|2249_1 165 ILLLDEVTTCLDVIVRQDLLFWLQKETETRRATVVYATHI 204
                 9**************************************6 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0005      0.31       2      21 ..      38      57 ..      37      69 .. 0.88
   2 ?    2.0   0.0       0.2   1.3e+02      86     109 ..     204     235 ..     166     265 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0005
   PF05729.7  2 tvilqGeaGsGKTtLlqkla 21
                 ++l G++G GK+tLl+ la
  MMETSP0890-20130614|2249_1 38 RCLLLGANGAGKSTLLRVLA 57
                5799************9987 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.2
   PF05729.7  86 ilDglDelvsdlgq........lkekqpvrtl 109
                 i+DglD+ +++ ++        ++++ +  +l
  MMETSP0890-20130614|2249_1 204 IFDGLDDWPTHIHFltrhgstgWQGRLSDLDL 235
                 89999999998888666666665555555555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00028      0.18       6      45 ..      40      81 ..      36      99 .. 0.72
   2 ?    0.3   0.0      0.85   5.3e+02      63      81 ..     164     188 ..     140     225 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00028
   PF13173.1  6 vitGpRrvGKttllkqlakell..keesilyinlddeelrkl 45
                ++ G+ ++GK+tll+ la ++l  ++  +  + ld  ++++l
  MMETSP0890-20130614|2249_1 40 LLLGANGAGKSTLLRVLAGKHLtkPDGAVKVMGLDAFRDLRL 81
                789*******************84444444455666655554 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.85
   PF13173.1  63 kylflDEiqev......pewedalk 81 
                  +l+lDE++ +      +++  +l+
  MMETSP0890-20130614|2249_1 164 DILLLDEVTTCldvivrQDLLFWLQ 188
                 4799999999966666644444444 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00019      0.12       2      22 ..      39      59 ..      38     100 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00019
   PF13521.1  2 ivitGgpstGKTtlleaLaar 22
                  ++G+ ++GK+tll+ La +
  MMETSP0890-20130614|2249_1 39 CLLLGANGAGKSTLLRVLAGK 59
                6799**************943 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013     0.083      14      40 ..      36      62 ..      23      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00013
                EEEEEEE--TT---HHHHHHHHHS-EE CS
  PF00025.16 14 elrilllGLDnaGKtTilkklkleelv 40
                  r+lllG  +aGK+T+l  l  ++l+
  MMETSP0890-20130614|2249_1 36 GSRCLLLGANGAGKSTLLRVLAGKHLT 62
                579****************99988765 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012       7.6      28      42 ..      40      54 ..      28      61 .. 0.84
   2 ?    4.8   0.0      0.02        13     156     192 ..     160     196 ..     137     205 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.012
                EE--------HHHHH CS
                xxxxxxxxxxxxxxx RF
  PF02463.14 28 aivGpNGSGKsnvld 42
                 ++G+NG+GKs +l 
  MMETSP0890-20130614|2249_1 40 LLLGANGAGKSTLLR 54
                579********9975 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.02
                 SS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 156 vkpaplyllDeidaaLDeknvskvaellkeksknaQf 192
                 v+p  + llDe+   LD   ++ +   l++++++   
  MMETSP0890-20130614|2249_1 160 VRPFDILLLDEVTTCLDVIVRQDLLFWLQKETETRRA 196
                 7899999*****************9999988876554 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00017      0.11       4      41 ..      39      77 ..      36      86 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00017
                EEEE-------TTTHHHHHHHHHHT.---EEEEE--TSS CS
  PF00448.17  4 illvGlqGaGKTTtlaKLAallkke.gkkvllvaaDtfR 41
                +ll+G +GaGK T l  LA +  ++    v ++ +D fR
  MMETSP0890-20130614|2249_1 39 CLLLGANGAGKSTLLRVLAGKHLTKpDGAVKVMGLDAFR 77
                699****************88777769999********9 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0015       0.9       2      22 ..      40      62 ..      39     213 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0015
                EEE-------HHHHHHHHHH..C CS
  PF00004.24  2 llyGppGtGKTllakavake..l 22
                ll G  G GK++l + +a +  +
  MMETSP0890-20130614|2249_1 40 LLLGANGAGKSTLLRVLAGKhlT 62
                899***************99431 PP

>> PF02456.10  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00025      0.15      78     116 ..      26      65 ..      20      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00025
  PF02456.10  78 lkslnygkqPvigvv.ygptgsGksqllrnllsakliePi 116
                 lk ln+++ P    +  g+ g+Gks llr l + +l +P 
  MMETSP0890-20130614|2249_1  26 LKGLNMQLAPGSRCLlLGANGAGKSTLLRVLAGKHLTKPD 65 
                 789*******8765439************99988888886 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024      0.15      18      43 ..      38      63 ..      29      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00024
   PF13166.1 18 vNlIYGrNGsGKtTlSrllrslelke 43
                 +l+ G NG+GK+Tl r+l+   l++
  MMETSP0890-20130614|2249_1 38 RCLLLGANGAGKSTLLRVLAGKHLTK 63
                57888*************99866555 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.17      51      77 ..      34      60 ..      25      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00027
   PF05673.8 51 lpannvLLwGarGtGKSslvkallney 77
                +p +  LL Ga G+GKS+l++ l  + 
  MMETSP0890-20130614|2249_1 34 APGSRCLLLGANGAGKSTLLRVLAGKH 60
                577889***************987665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00029      0.18      23      37 ..      40      54 ..      25      57 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00029
   PF13476.1 23 lItGpNGsGKTTild 37
                l+ G NG+GK+T+l 
  MMETSP0890-20130614|2249_1 40 LLLGANGAGKSTLLR 54
                899**********96 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.17       2      23 ..      39      60 ..      38     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00027
                EEEE--TT---HHHHHHHHCST CS
  PF01926.18  2 vaivGrpNvGKStLinaLtgek 23
                + ++G   +GKStL++ L g+ 
  MMETSP0890-20130614|2249_1 39 CLLLGANGAGKSTLLRVLAGKH 60
                789***************9754 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00043      0.27       7      37 ..      26      56 ..      22      57 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00043
   PF12128.3  7 lkGqvneldldghtnieGtNgaGKTtLlrLl 37
                lkG   +l++  +  + G+NgaGK tLlr l
  MMETSP0890-20130614|2249_1 26 LKGLNMQLAPGSRCLLLGANGAGKSTLLRVL 56
                567777888999999**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.73
# Mc/sec: 994.65
//
Query:       MMETSP0890-20130614|2253_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-26   91.3   0.0      2e-15   55.8   0.0    2.1  2  PF13475.1  Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.026   14.1   0.0       0.57    9.7   0.0    2.3  2  PF12385.3  Papain-like cysteine protease AvrRpt2
      0.094   12.4   3.6         46    3.8   0.1    3.8  4  PF03911.11 Sec61beta family


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   4.4e-19     2e-15       1      49 []       5      53 ..       5      53 .. 0.97
   2 !   33.7   0.0   3.5e-12   1.6e-08       3      39 ..      57      93 ..      55      94 .] 0.94

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 4.4e-19
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                D  ivl+av+++g++lk+++++L+ D eivl+Av+qng+al ya++ L+
  MMETSP0890-20130614|2253_1  5 DPKIVLAAVQQYGWVLKFADPKLQADPEIVLAAVQQNGHALQYADPKLK 53
                788*******************************************997 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 3.5e-12
   PF13475.1  3 EivleavkkngsalkylseeLknDkeivlkAvkqngs 39
                 ivl+av+++  a++y++++Lk + eivl+Avkq+g+
  MMETSP0890-20130614|2253_1 57 GIVLAAVQQDVRAFEYADPKLKVNHEIVLAAVKQDGT 93
                59*********************************97 PP

>> PF12385.3  Papain-like cysteine protease AvrRpt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00013      0.57     106     159 ..      14      65 ..       3      69 .. 0.69
   2 ?    4.7   0.0    0.0042        19     127     159 ..      58      90 ..      53      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00013
   PF12385.3 106 skhGPiiaaletPndelvahvivltGidketdviifhDPergPdltmsldtlnq 159
                 +++G ++ ++  P+ +     ivl+ +++++ ++ + DP+   d  + l+ ++q
  MMETSP0890-20130614|2253_1  14 QQYGWVL-KFADPKLQA-DPEIVLAAVQQNGHALQYADPKLKADPGIVLAAVQQ 65 
                 5555443.333442222.335999999999999999999999998888888776 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0042
   PF12385.3 127 ivltGidketdviifhDPergPdltmsldtlnq 159
                 ivl+ ++++  +  + DP+   ++++ l+ ++q
  MMETSP0890-20130614|2253_1  58 IVLAAVQQDVRAFEYADPKLKVNHEIVLAAVKQ 90 
                 89999**************99999999988765 PP

>> PF03911.11  Sec61beta family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.011        50      16      26 ..       2      12 ..       1      13 [. 0.87
   2 ?    1.8   0.0     0.042   1.9e+02      14      26 ..      25      37 ..      23      38 .. 0.82
   3 ?    3.8   0.1      0.01        46      13      26 ..      49      62 ..      48      63 .. 0.89
   4 ?    1.6   0.0     0.049   2.3e+02      13      26 ..      74      87 ..      68      88 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.011
                ----CCHHHHH CS
  PF03911.11 16 lKvdPkvVlvl 26
                lK dPk+Vl++
  MMETSP0890-20130614|2253_1  2 LKADPKIVLAA 12
                688******97 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.042
                ------CCHHHHH CS
  PF03911.11 14 eGlKvdPkvVlvl 26
                ++l  dP++Vl++
  MMETSP0890-20130614|2253_1 25 PKLQADPEIVLAA 37
                677779*****87 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.01
                -------CCHHHHH CS
  PF03911.11 13 aeGlKvdPkvVlvl 26
                 ++lK dP +Vl++
  MMETSP0890-20130614|2253_1 49 DPKLKADPGIVLAA 62
                589*********87 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.049
                -------CCHHHHH CS
  PF03911.11 13 aeGlKvdPkvVlvl 26
                 ++lKv  ++Vl++
  MMETSP0890-20130614|2253_1 74 DPKLKVNHEIVLAA 87
                68****99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 308.57
//
Query:       MMETSP0890-20130614|2252_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-19   67.2   0.0    8.2e-19   67.0   0.0    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0     6e-23   8.2e-19       1      58 []       4      64 ..       4      64 .. 0.96

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 6e-23
   PF08373.5  1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnelqgkeekldYlkei 58
                +e+dGp+h+++   +++   g+t +K riL++lGw v++ipyfeW  l +   k +Yl+++
  MMETSP0890-20130614|2252_1  4 VEVDGPSHYLKGRgTRPSqnGSTAFKSRILRQLGWTVLNIPYFEWGTLVDATTKDAYLRSK 64
                69*******99998888899**************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 273.87
//
Query:       MMETSP0890-20130614|2257_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-23   83.1   0.2    4.5e-23   81.8   0.2    1.6  1  PF07859.8  alpha/beta hydrolase fold
    3.9e-12   45.5   0.2    5.4e-12   45.1   0.1    1.2  1  PF00135.23 Carboxylesterase family
    6.6e-12   44.9   0.1      4e-05   22.8   0.0    2.4  2  PF00326.16 Prolyl oligopeptidase family
    3.6e-09   36.4   0.1    6.8e-09   35.5   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
    6.8e-05   22.7   0.2    0.00011   22.0   0.1    1.2  1  PF12697.2  Alpha/beta hydrolase family
     0.0052   15.9   0.2     0.0096   15.0   0.1    1.5  1  PF10503.4  Esterase PHB depolymerase
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.069   12.7   0.0    1.5  1  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
      0.033   13.6   0.1       0.06   12.7   0.0    1.5  1  PF00561.15 alpha/beta hydrolase fold
      0.036   13.8   0.0       0.07   12.9   0.0    1.4  1  PF08386.5  TAP-like protein
      0.073   12.2   0.1        1.6    7.8   0.0    2.5  2  PF01738.13 Dienelactone hydrolase family
       0.11   11.8   1.1       0.48    9.8   0.1    2.1  2  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.2   3.6e-26   4.5e-23       2     207 ..     177     404 ..     176     407 .. 0.72

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 3.6e-26
                 EEE------SS-TGGGHHHHHHHHHHHTSEEEEEE---TTTS-TT...HHHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES-..........---T.......S-CHHHHHH.THHCTSTTSS-HHHHHHHHHH...HSS.GGGGG.STTTSGGGS..S-.HTT---EEEEEEEE-TTS..----HHHHHHHH----EEEEEEE-EE- CS
   PF07859.8   2 lyfHGGGfvlgsadthdalcrrlakelgavvvsvdYrlAPehrfP...aavedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyP..........gtdl.......ertesesqelaeeladgplltrdamdlfwrl...ylp.eadrd.dplasplla..sd.lsglpptlvvvaelDplr..degeayaerlraagvevelveyegmvH 207
                 +yfHGG+f++gs +   + ++ la+  g++ +sv YrlA  +  P   aaveda +a++ ++e+a+++g+dp++i+v+GdSaGG La+ +a+   ++     aa+++ +P          g          + +  +s++++ ++ d++++ + ++ lf r    +lp + d +   l sp+ +  ++ l++lpp+l+ +a +D++   ++ + +a+  + + ++ +l+ + +  H
  MMETSP0890-20130614|2257_1 177 IYFHGGAFLFGSKEFGAPPLTYLAA-HGVTGFSVGYRLASLASSPglsAAVEDARNAMAFIKENAAHYGVDPQKIFVMGDSAGGLLATLLAIDHNSS----AAALIINWPlstlsgqqwfG--NsqqsnipNVFVPQSINNKAQFIDTHVF-AGNFLLFGRRfrgWLPpRYDSHlAHLYSPMSRlnQStLQKLPPALISAAFNDTIVpyEQTKLFAQTYHLKSQSSTLITFYDSDH 404
                 8***********************8.9**********887666554449***************99*************************998886....67777777765555433331..0322233333333444444444444444.4444455444122454444433355899998874336***************98622577778888888888888887777777 PP

>> PF00135.23  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1   4.3e-15   5.4e-12     120     231 ..     168     271 ..     156     303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 4.3e-15
                 -SSTS--EEEE----------TTSGGGHHHHHHHHHT-EEEEE----TT-------HHTC--TT---HHHHHHHHHHHHHGGG----TTSEEEE------HHHHHHHHTCCG CS
  PF00135.23 120 keskklPVmVwIhGGgfqsgsaslddydgselaasenvivVtinYRlGalGFlslgdseappgNaGllDqvlALrWVkenIaaFGGDpnnvTlfGesAGaasvsllllspqs 231
                 +++kk P  +++hGG+f +gs +       +++a + v   ++ YRl +l      + +     a+  D + A+ ++ken a++G Dp+++ ++G+sAG+ +++ll + ++s
  MMETSP0890-20130614|2257_1 168 QKEKKGPGCIYFHGGAFLFGSKE-FGAPPLTYLAAHGVTGFSVGYRLASLASS--PGLS-----AAVEDARNAMAFIKENAAHYGVDPQKIFVMGDSAGGLLATLLAIDHNS 271
                 333388999************94.45566789999*************99755..4444.....5699**************************************998655 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07    0.0003      45     102 ..     229     286 ..     222     314 .. 0.85
   2 !   22.8   0.0   3.3e-08     4e-05     111     209 ..     327     426 ..     295     428 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TT CS
  PF00326.16  45 fdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwl 102
                 ++  +a +++ a+++ vdp++++++G S+GG+l+   + ++++  +a++ + + + + 
  MMETSP0890-20130614|2257_1 229 ARNAMAFIKENAAHYGVDPQKIFVMGDSAGGLLATLLAIDHNSSAAALIINWPLSTLS 286
                 566788899999999*********************9999999999888888776665 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.3e-08
                 ---GGGGT---TTSHHH.HHHHHHH-GGG---..----EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---------HHHHHHHHHHHHHHHHH CS
  PF00326.16 111 lteaeymeygnpeeneegyeelspyspadnvk..aypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegHgigkprakveelarllaFllka 209
                 +++ +  ++  p+++ +  +  sp+s +++ +  + pp l+  + +D+ vp++++  ++++   + + + l++f d++H  g + a+    a+l+aFl k+
  MMETSP0890-20130614|2257_1 327 FGR-RFRGWLPPRYDSHLAHLYSPMSRLNQSTlqKLPPALISAAFNDTIVPYEQTKLFAQTYHLKSQSSTLITFYDSDHCQGAAYASPIGRATLTAFLRKH 426
                 777.88899999888888888888888888778899***************************99999***********7666666669999999999886 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   5.5e-12   6.8e-09       3     141 ..     177     404 ..     175     405 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 5.5e-12
   PF12695.2   3 vlvhGagg...dssayeplaealakrgfavvavdlpghgas.........egaaaakrvl..aadll.....dleriilvGhSlGGgvalelagrd.drvkglvllap........f.......pdgedlakltl...............................................................pvllihGtrDgvvppeeaeklakalp...gdaelvviegasH 141
                 +++hG++    +++  +p    la++g+  ++v ++  + +         e+a+ a +++      +     d+++i+++G S+GG +a++la ++ +++++l++  p        +                 +                                                               p l+  + +D++vp+e+ + +a+ ++   ++++l+++ + +H
  MMETSP0890-20130614|2257_1 177 IYFHGGAFlfgSKEFGAPPLTYLAAHGVTGFSVGYRLASLAsspglsaavEDARNAMAFIkeN---AahygvDPQKIFVMGDSAGGLLATLLAIDHnSSAAALIINWPlstlsgqqWfgnsqqsN---------IpnvfvpqsinnkaqfidthvfagnfllfgrrfrgwlpprydshlahlyspmsrlnqstlqklpPALISAAFNDTIVPYEQTKLFAQTYHlksQSSTLITFYDSDH 404
                 899998554437777889999************887776653444332234444444444551...345569**********************9966666666555655444444133333330.........144444666666666777788******************************************9999999**********99988887777667788888888888 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   8.8e-08   0.00011      15     216 ..     193     405 ..     177     411 .. 0.61

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 8.8e-08
                 -HHHHHH.TTTSEEEE..E-----------S...S--HHHHHHHHHHHHHH--.......--EEEE--------HHHHHH----.EEEEEEE------STT...............---TTHHHHHHHHHH.----....--H..HHHHH-..----HHHHHH.--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHS....TTEEEEE---SSSS CS
   PF12697.2  15 rplaeaL.aagyrvva..pDlpGhGrSdrppdydpdtledlaadlaalldalgl......rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...............alrpagpsllrrlla.graaalrdlaarafarlfd..gdelealvra.daaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaeal....pgarvvvlpgagHl 216
                 +p + +L a+g++ ++  + l +   S++++        ++a+ + a++++  +      ++++++G S Gg++a+++a ++ +  ++l+ i+ p+++ ++                            +  + +  ++ + ++ fa  f   g++++ ++   +  +la+l+++  + ++  + l++l  P+l+ a+ +D +vp+e+ + +a+        ++++++ +++H+
  MMETSP0890-20130614|2257_1 193 APPLTYLaAHGVTGFSvgYRLASLASSPGLS-----AAVEDARNAMAFIKENAAhygvdpQKIFVMGDSAGGLLATLLAIDHNSSAAALI-INWPLSTLSGqqwfgnsqqsnipnvF------------VPqSINNKAQFIDTHVFAGNFLlfGRRFRGWLPPrYDSHLAHLYSP--MSRLNQSTLQKL-PPALISAAFNDTIVPYEQTKLFAQTYhlksQSSTLITFYDSDHC 405
                 5555666335666433003444444444443.....35677777788887766678999899******************9998766666.55555333334665554433332220............2223333344455555666553346666666655344555666665..777777888888.9**************88888887754111134678888888887 PP

>> PF10503.4  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   7.7e-06    0.0096      83     126 ..     234     277 ..     204     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.7e-06
   PF10503.4  83 alvdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaava 126
                 a+++  + +++vd+ +++v G saG+ la lla  +    aa+ 
  MMETSP0890-20130614|2257_1 234 AFIKENAAHYGVDPQKIFVMGDSAGGLLATLLAIDHNSSAAALI 277
                 5566677889*************************999988875 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.6e-05     0.069      16      75 ..     242     302 ..     230     323 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.6e-05
                 STTB-------B------HHHHHHHHHSSS---EEEE----------EEETTE...EE--- CS
   PF08840.6  16 hpkvkkdkigllGiSkGgelalllasflkkisavvlingsavvvegkllykees.kvlpel 75 
                 h  v  +ki ++G S Gg la lla+ +++  a+ +in +    +g++ + +++   +p++
  MMETSP0890-20130614|2257_1 242 HYGVDPQKIFVMGDSAGGLLATLLAIDHNSSAAALIINWPLSTLSGQQWFGNSQqSNIPNV 302
                 778999***********************88888888877766666666554443444444 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.8e-05      0.06      28      91 ..     230     292 ..     217     386 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHSTSSS..EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCH CS
  PF00561.15  28 ddlardleavldalglkk..ltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvln 91 
                 +++ ++++   ++ g++   + ++G S GG++a+ +a ++ ++ +a++   +   ls+++   ++ 
  MMETSP0890-20130614|2257_1 230 RNAMAFIKENAAHYGVDPqkIFVMGDSAGGLLATLLAIDHNSSAAALIINWP---LSTLSGQQWFG 292
                 55667777778899999889**********************9999998887...56666555554 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.6e-05      0.07      28      96 ..     355     428 ..     345     434 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.6e-05
   PF08386.5  28 elkakgappvLlvqnelDPatpyegakklaralgg....avlvtvegeGHgala.agnkCvdkavdaYLltGel 96 
                 +++ ++ pp+L+ ++ +D ++pye++k +a+++      ++l+t  +++H++ a   ++  + +++a+L++ +l
  MMETSP0890-20130614|2257_1 355 QSTLQKLPPALISAAFNDTIVPYEQTKLFAQTYHLksqsSTLITFYDSDHCQGAaYASPIGRATLTAFLRKHRL 428
                 34444569*****************9999987543223489**********99977888888999999998666 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0013       1.6      80     126 ..     227     277 ..     214     304 .. 0.70
   2 ?    1.2   0.0      0.13   1.6e+02     146     188 ..     362     404 ..     344     413 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0013
  PF01738.13  80 ddlkaainylk...slpevstkkvgvvGfClGGalalllAaen.pevdaav 126
                 +d+++a++++k   ++  v+++k+ v+G   GG+la llA  +   + a +
  MMETSP0890-20130614|2257_1 227 EDARNAMAFIKenaAHYGVDPQKIFVMGDSAGGLLATLLAIDHnSSAAALI 277
                 44444444444000555689********************98834455555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.13
  PF01738.13 146 apilahlgeeDpfipaeaaedleealakankdlelkiYpgagH 188
                  p+l++++ +D+++p e+++ + ++   + +  +l  + + +H
  MMETSP0890-20130614|2257_1 362 PPALISAAFNDTIVPYEQTKLFAQTYHLKSQSSTLITFYDSDH 404
                 5899*******************99987777777777766777 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.29   3.6e+02      68      83 ..     204     219 ..     200     235 .. 0.84
   2 ?    9.8   0.1   0.00039      0.48      53      86 ..     235     270 ..     219     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.29
                 EE-------HHHHHHH CS
  PF01764.20  68 vtGHSLGGalAlLaaa 83 
                 vtG+S G  lA+La+ 
  MMETSP0890-20130614|2257_1 204 VTGFSVGYRLASLASS 219
                 8************986 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00039
                 HHHHHHHHST.T.SEEEEE-------HHHHHHHHHH CS
  PF01764.20  53 elkrllekyp.d.ykivvtGHSLGGalAlLaaadla 86 
                  +k+  ++y  d  ki+v G S GG lA+L+a+d  
  MMETSP0890-20130614|2257_1 235 FIKENAAHYGvDpQKIFVMGDSAGGLLATLLAIDHN 270
                 566666666664489*****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.75
# Mc/sec: 1623.13
//
Query:       MMETSP0890-20130614|2254_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-35  118.2   1.7    1.3e-34  117.6   0.5    1.8  2  PF06071.8  Protein of unknown function (DUF933)
    6.6e-19   67.8   0.0    1.6e-18   66.6   0.0    1.7  2  PF01926.18 50S ribosome-binding GTPase
    2.7e-08   33.1   0.0    5.7e-08   32.0   0.0    1.5  1  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.027   14.2   0.0    1.4  1  PF02824.16 TGS domain
      0.071   13.7   0.0        0.2   12.3   0.0    2.2  1  PF13207.1  AAA domain


Domain annotation for each model (and alignments):
>> PF06071.8  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   4.3e+03      25      48 ..     135     144 ..     128     180 .. 0.60
   2 !  117.6   0.5   4.8e-38   1.3e-34       1      84 []     315     402 ..     315     402 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.6
                 HH-----HHHHHT-----EE-HHH CS
   PF06071.8  25 qaagviHsDfekgFiraevisyed 48 
                 ++ +viH D              d
  MMETSP0890-20130614|2254_1 135 ESEEVIHVD--------------D 144
                 344444444..............3 PP

  == domain 2    score: 117.6 bits;  conditional E-value: 4.8e-38
                 EEEEEE----EEEEEEEE---BHHHH-----HHHHHT-----EE-HHHHHHHT....SHHHHHH-----------B-----EE----- CS
   PF06071.8   1 LitfftaGekEvraWtikkgtkapqaagviHsDfekgFiraevisyedliklk....seakvkeagklrleGkeYvvqdgDiiefkfn 84 
                 Li+fftaGekEvraW+i +g+ apqaag iH+Dfe+gFi+aev  yed+++      s+a +k+ gk r+eGk Yvv+dgDiiefkfn
  MMETSP0890-20130614|2254_1 315 LIYFFTAGEKEVRAWNIYNGSLAPQAAGAIHTDFERGFIKAEVAGYEDFKTHCggkaSMAGLKAVGKHRQEGKAYVVKDGDIIEFKFN 402
                 789**********************************************987334558999**************************8 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   5.8e-22   1.6e-18       1     107 [.      31     163 ..      31     186 .. 0.71
   2 ?   -2.5   0.0       1.7   4.5e+03      71      80 ..     197     207 ..     177     251 .. 0.51

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 5.8e-22
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE.............ETTE........EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE.TTS..HHHH..........HHHHHHHHHHTCCC CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev.............kkek........iilvDtPGiiegasedkeiegikkylekveradvlllvvd.asa..vlke..........adkellneleakkp 107
                 +++ivG+pNvGKS+L+n Lt++  a  ++yp++T d++e +                 k        + ++D++G+i+gase+  +   + +l +++ +d++++v+   ++  v             + +++ +el  kk+
  MMETSP0890-20130614|2254_1  31 KMGIVGLPNVGKSSLFNLLTEQ-TADAANYPFCTIDPNEAQCpvpdqrfkwlcelY--KpaskvpavLKVTDIAGLIRGASEGA-G-LGNAFLSHIQAVDGIFHVIRaFESeeV--IhvddsvdpirDLETIQSEL-CKKD 163
                 589*****************75.88************7644355544445555441..14445666346**********99999.4.4678***************94333331..13333444444455555555.4444 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.7
                 HHHHH.CTSSE CS
  PF01926.18  71 ylekv.eradv 80 
                 +le++ +++ +
  MMETSP0890-20130614|2254_1 197 VLEHLeKNLPA 207
                 44554333222 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.1e-11   5.7e-08       3      49 ..      32      78 ..      30      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 2.1e-11
                EEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEE CS
  PF02421.13  3 valvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkev 49
                + +vG pnvGK++lfn lt+++ + +N+p  T++ +e+++ + ++++
  MMETSP0890-20130614|2254_1 32 MGIVGLPNVGKSSLFNLLTEQTADAANYPFCTIDPNEAQCPVPDQRF 78
                679**********************************9998777665 PP

>> PF02824.16  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.7e-06     0.027      16      58 ..     334     399 ..     316     400 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.7e-06
                 TT-HHHHHHHH-S--GGG--EEEETS.......................SEE-SSS---TTEEEEE CS
  PF02824.16  16 gstveDfAykIhrslakkfiyAlVnG.......................qrvglshvLedgDvVeI 58 
                 gs + ++A +Ih+++ + fi A V G                       ++ g  +v +dgD++e+
  MMETSP0890-20130614|2254_1 334 GSLAPQAAGAIHTDFERGFIKAEVAGyedfkthcggkasmaglkavgkhRQEGKAYVVKDGDIIEF 399
                 66677899***************************************99999***********985 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.3e-05       0.2       3      32 ..      33      66 ..      31     307 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.3e-05
                --B--TT---HHHHHHH....HHHSTEEEEEGGG CS
   PF13207.1  3 aitGppGsGKsTlakeL....aerlglpvlsldd 32
                +i+G p +GKs+l ++L    a++ ++p + +d 
  MMETSP0890-20130614|2254_1 33 GIVGLPNVGKSSLFNLLteqtADAANYPFCTIDP 66
                79***************55555555999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.63
# Mc/sec: 1540.52
//
Query:       MMETSP0890-20130614|2261_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-20   73.1   0.0    1.1e-20   72.9   0.0    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   8.3e-25   1.1e-20       2      57 ..       2      60 ..       1      61 [. 0.94

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 8.3e-25
   PF08373.5  2 eidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57
                e+dGpth++++  ++ l  g tk+K r+L+ lGw v+++pyfeWn l++   +  Yl++
  MMETSP0890-20130614|2261_1  2 EVDGPTHYLKRKgKQRLenGRTKFKSRLLRRLGWTVVHVPYFEWNALSDAAAQDTYLQS 60
                9***********66666****************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 269.06
//
Query:       MMETSP0890-20130614|2265_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-07   30.9   8.1      2e-07   30.9   5.6    3.0  3  PF01826.12 Trypsin Inhibitor like cysteine rich domain
  ------ inclusion threshold ------
        1.4    8.6  11.4        1.7    8.3   0.6    3.6  2  PF12662.2  Complement Clr-like EGF-like
        4.6    7.1  23.1       0.52   10.2   6.0    2.5  2  PF11437.3  Vanadium-binding protein 2


Domain annotation for each model (and alignments):
>> PF01826.12  Trypsin Inhibitor like cysteine rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   5.6   4.4e-11     2e-07       1      54 [.      37      91 ..      37      93 .. 0.87
   2 ?    1.8   4.3     0.053   2.4e+02      12      52 ..     103     147 ..      93     149 .. 0.70
   3 ?   -1.9   0.5      0.73   3.3e+03      14      24 ..     170     181 ..     151     186 .. 0.62

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 4.4e-11
  PF01826.12  1 CpaneeyseCgsaCektCdnlekpeeCeeeCvegCvCkegfvrdes..gkCVprse 54
                C+ + +++ C+saC+  C +  +   C++ C++gC C++gf ++e+  ++CV+++e
  MMETSP0890-20130614|2265_1 37 CSGDLVFDGCHSACPFVCGKEIPAL-CPTVCHRGCGCRRGFWLTEEdgDTCVQSEE 91
                888999***************9997.**************995544458***9764 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.053
  PF01826.12  12 saCektCdnlekpeeCe..eeCveg....CvCkegfvrdesgkCVpr 52 
                    e++C + +  + C   ++Cv++    C C   + +d++g+CV +
  MMETSP0890-20130614|2265_1 103 DRDEHNCIHSAGYTWCGglRQCVRPweteCNC--LTALDSNGNCVDV 147
                 55678888888888888888888776644777..566777789*986 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.73
  PF01826.12  14 C.ektCdnlekp 24 
                 C e  C++l++p
  MMETSP0890-20130614|2265_1 170 CtEMYCSELDEP 181
                 334455555554 PP

>> PF12662.2  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6   0.00037       1.7       4      20 ..      70      87 ..      62      87 .. 0.88
   2 ?    2.8   2.7     0.019        85       9      23 ..     114     148 ..     112     148 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00037
   PF12662.2  4 CsCppGYqlsp.dGrsCv 20
                C C++G+ l+  dG +Cv
  MMETSP0890-20130614|2265_1 70 CGCRRGFWLTEeDGDTCV 87
                88******9955889997 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.019
   PF12662.2   9 GYq.....................lspdGrsCvDID 23 
                 GY+                     l+++G +CvD+D
  MMETSP0890-20130614|2265_1 114 GYTwcgglrqcvrpwetecncltaLDSNG-NCVDVD 148
                 66666666666666666666655555555.8****9 PP

>> PF11437.3  Vanadium-binding protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   5.4     0.072   3.3e+02      12      63 ..      43      94 ..      33     113 .. 0.62
   2 ?   10.2   6.0   0.00011      0.52       7      69 ..     116     177 ..     108     187 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.072
                HHHHHHHHHHHTTT-TTHH...HHHHHHHHHH-HHHHHHHHHHHHHH...HHHHH CS
   PF11437.3 12 lkaCkkkCkekCeasrekk...aCkknCkktkCkkskkqCkkCvkkClaevkaCr 63
                +  C+++C   C ++  +     C++ C    C + +   ++   +C++++++C 
  MMETSP0890-20130614|2265_1 43 FDGCHSACPFVCGKEIPALcptVCHRGC---GCRRGFWLTEEDGDTCVQSEEDCP 94
                5679999999999988533333455555...444444444444444555555554 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00011
                 STTHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHH-HHHHHHHHHHHHHH...HHHHHHHS-SS CS
   PF11437.3   7 eeCkelkaCkkkCkekCeasrekkaCkknCkktkCkkskkqCkkCvkkClaevkaCraknCas 69 
                 + C  l++C +  +++C+  ++    + nC   +C++ ++ C++C  + ++ +  C +  C++
  MMETSP0890-20130614|2265_1 116 TWCGGLRQCVRPWETECNCLTA-LDSNGNCVDVDCSSWFDGCNTCGVDMITGNLVCTEMYCSE 177
                 67*********99999999885.67899*********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.92
# Mc/sec: 742.35
//
Query:       MMETSP0890-20130614|2267_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-23   81.5   0.7    3.3e-23   81.1   0.2    1.4  2  PF00313.17 'Cold-shock' DNA-binding domain
    0.00016   20.9   0.1    0.00044   19.5   0.1    1.8  1  PF08206.6  Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.8   1.2e+04      15      20 ..       5      10 ..       5      11 .. 0.82
   2 !   81.1   0.2   4.8e-27   3.3e-23       2      65 ..      51     115 ..      50     116 .. 0.95

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.8
                --B--- CS
  PF00313.17 15 GFItre 20
                GFI r+
  MMETSP0890-20130614|2267_1  5 GFIARS 10
                9*9986 PP

  == domain 2    score: 81.1 bits;  conditional E-value: 4.8e-27
                 ---B----S..----B--------BB--TTT----T.TS------EEEEE--.-----BEEEEEE CS
  PF00313.17   2 tGtVkwfnakkgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevve.gekgpeAanVtk 65 
                 tGtVkwf+++kgfGFI ++ g++d+FvHq++i  +gfrsL+eG++VeF+ +  +++++ A+ Vt+
  MMETSP0890-20130614|2267_1  51 TGTVKWFSTEKGFGFIVPAAGGDDLFVHQTQIHAQGFRSLAEGETVEFDEETdSSGRKRAIGVTG 115
                 8************************************************9997889999999987 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   6.4e-08   0.00044       5      29 ..      58      82 ..      52      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.4e-08
   PF08206.6  5 ahkkGFGFvipDdgeeDifippeqm 29
                 ++kGFGF++p  g++D+f++++q+
  MMETSP0890-20130614|2267_1 58 STEKGFGFIVPAAGGDDLFVHQTQI 82
                579******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 475.75
//
Query:       MMETSP0890-20130614|2272_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-20   71.2   0.7    8.1e-12   44.4   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
     0.0038   16.7   0.0       0.62    9.6   0.0    2.2  2  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.011   13.8   0.0      0.011   13.8   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160
      0.018   14.2   0.2       0.45    9.7   0.0    2.3  2  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   2.4e-15   8.1e-12       5      39 .]       2      36 ..       1      36 [. 0.96
   2 !   25.8   0.0   1.7e-09   5.8e-06       2      30 ..      41      69 .]      40      69 .] 0.94

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 2.4e-15
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH+s+V+++a+spdg  l+s+S D+t+rlW+
  MMETSP0890-20130614|2272_1  2 RELVGHESAVSSIAYSPDGITLVSASNDRTCRLWN 36
                5789******************************7 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.7e-09
                EEEEEEESSSSSEEEEEEESSSTEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgS 30
                + ++++rg t++++cv fspdg+ +a+++
  MMETSP0890-20130614|2272_1 41 TELRIFRGATASIECVVFSPDGHTFATSG 69
                6799***********************97 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00018      0.62      13      28 ..      13      28 ..       8      35 .. 0.84
   2 !    5.3   0.0     0.004        14      11      21 ..      53      63 ..      44      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00018
                EEEE-----EEEEEE- CS
   PF07676.7 13 ePawSPDGkkivFtSn 28
                ++a+SPDG ++v +Sn
  MMETSP0890-20130614|2272_1 13 SIAYSPDGITLVSASN 28
                579********96665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.004
                EEEEEE----- CS
   PF07676.7 11 ngePawSPDGk 21
                 ++ ++SPDG 
  MMETSP0890-20130614|2272_1 53 IECVVFSPDGH 63
                56779*****5 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.1e-06     0.011     212     258 ..       5      47 ..       1      64 [. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.1e-06
   PF11715.3 212 rsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqclrttd 258
                 +  +sa++s++ s+   +g t+v + s D++ R+Wn+++g+ lr   
  MMETSP0890-20130614|2272_1   5 VGHESAVSSIAYSP---DGITLV-SASNDRTCRLWNVANGTELRIFR 47 
                 56789999999999...555555.*****************977654 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.025        87       8      12 ..      16      20 ..      12      20 .. 0.89
   2 ?    9.7   0.0   0.00013      0.45       5      13 ..      55      63 ..      54      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.025
                ----- CS
   PF10584.4  8 FSPdG 12
                +SPdG
  MMETSP0890-20130614|2272_1 16 YSPDG 20
                9***9 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00013
                TT------- CS
   PF10584.4  5 lTtFSPdGR 13
                + +FSPdG+
  MMETSP0890-20130614|2272_1 55 CVVFSPDGH 63
                569*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.95
# Mc/sec: 174.05
//
Query:       MMETSP0890-20130614|2275_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.46s 00:00:00.92 Elapsed: 00:00:00.99
# Mc/sec: 464.75
//
Query:       MMETSP0890-20130614|2277_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-10   39.2   2.5    9.7e-10   38.1   1.8    1.6  1  PF13424.1  Tetratricopeptide repeat
    5.9e-10   38.5   0.0    5.2e-08   32.4   0.0    2.3  2  PF13374.1  Tetratricopeptide repeat
      3e-07   29.8   3.5    0.00028   20.3   0.2    2.1  3  PF13414.1  TPR repeat
    7.5e-06   25.2   0.8    0.00076   18.8   0.0    2.9  3  PF00515.23 Tetratricopeptide repeat
      2e-05   24.0   0.5     0.0018   17.9   0.0    2.4  2  PF07719.12 Tetratricopeptide repeat
    0.00037   19.9   1.7      0.042   13.5   0.1    2.6  2  PF13181.1  Tetratricopeptide repeat
     0.0005   19.5   0.0      0.004   16.7   0.0    2.3  2  PF13176.1  Tetratricopeptide repeat
     0.0012   19.3   0.1     0.0016   18.8   0.1    1.2  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.2   0.0       0.18   12.2   0.0    2.3  2  PF13174.1  Tetratricopeptide repeat
      0.037   13.5   0.2      0.067   12.6   0.2    1.4  1  PF04781.7  Protein of unknown function (DUF627)
       0.16   12.0   1.0       0.27   11.2   0.7    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   1.8   7.8e-13   9.7e-10      17      74 ..      60     118 ..      39     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 7.8e-13
   PF13424.1  17 rlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                    dyd A e++  a +l  +++g+++   a++l+nla+l+  +g y+eA++++e+A+ 
  MMETSP0890-20130614|2277_1  60 SSDDYDLAYEHLSAARDLaEKLYGNHSEHFATSLYNLARLLKDKGIYSEAKPLYERAIV 118
                 458***************88899**********************************85 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.032        40      16      40 ..      62      85 ..      57      88 .. 0.86
   2 !   32.4   0.0   4.2e-11   5.2e-08       2      40 ..      90     128 ..      89     130 .. 0.98

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.032
   PF13374.1 16 gryeeAlaleeealairrrllGddH 40
                ++y+ A +++ +a+++ ++l+G +H
  MMETSP0890-20130614|2277_1 62 DDYDLAYEHLSAARDLAEKLYG-NH 85
                689999999************9.44 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 4.2e-11
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 a++l nLA++l + g y eA +l+e+a  i++ ++G+dH
  MMETSP0890-20130614|2277_1  90 ATSLYNLARLLKDKGIYSEAKPLYERAIVIWEDIHGPDH 128
                 89************************************* PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00087       1.1      39      68 ..      45      78 ..      25      79 .. 0.78
   2 !   20.3   0.2   2.3e-07   0.00028      13      66 ..      58     118 ..      41     121 .. 0.80
   3 !   12.2   0.0   7.5e-05     0.093       4      34 ..      91     121 ..      87     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00087
   PF13414.1 39 lyynlAlaylkl....gkdyeeAledyekAleld 68
                l++n++ +++k+     +dy+ A+e+++ A  l+
  MMETSP0890-20130614|2277_1 45 LHSNIGSLFFKKvfisSDDYDLAYEHLSAARDLA 78
                899*****99985555499********9998875 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 2.3e-07
   PF13414.1  13 lfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 +++  dyd A e+++ A +l         ++ a  +ynlA ++  +g  y eA   ye+A+ 
  MMETSP0890-20130614|2277_1  58 FISSDDYDLAYEHLSAARDLAeklygnhsEHFATSLYNLARLLKDKG-IYSEAKPLYERAIV 118
                 45588*************9954444333244466*************.9***********85 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 7.5e-05
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldp 34 
                  +l++l+  l  +g y eA  +ye+A+ +++
  MMETSP0890-20130614|2277_1  91 TSLYNLARLLKDKGIYSEAKPLYERAIVIWE 121
                 5678888888888888888888888887764 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.64   7.9e+02       4      13 ..      46      55 ..      45      56 .. 0.86
   2 ?    3.2   0.1     0.054        68      15      31 ..      62      78 ..      57      81 .. 0.80
   3 !   18.8   0.0   6.1e-07   0.00076       2      30 ..      91     119 ..      90     122 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.64
                HHHHHHHHHH CS
  PF00515.23  4 lynlGnaylk 13
                + n+G +++k
  MMETSP0890-20130614|2277_1 46 HSNIGSLFFK 55
                89*****998 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.054
                T-HHHHHHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekALeln 31
                 +yd A e+ + A  l 
  MMETSP0890-20130614|2277_1 62 DDYDLAYEHLSAARDLA 78
                79*******99997776 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                  +lynl+ ++  +g y eA   ye+A+ +
  MMETSP0890-20130614|2277_1  91 TSLYNLARLLKDKGIYSEAKPLYERAIVI 119
                 689***********************976 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.033        42      13      32 ..      60      79 ..      56      81 .. 0.84
   2 !   17.9   0.0   1.4e-06    0.0018       2      28 ..      91     117 ..      90     119 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.033
                HTT-HHHHHHHHHHHHHH-T CS
  PF07719.12 13 klgdyeeAleafekAleldP 32
                 ++dy+ A e++  A  l+ 
  MMETSP0890-20130614|2277_1 60 SSDDYDLAYEHLSAARDLAE 79
                578************99876 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAl 28 
                   lynl++++  +g y eA+ ++e+A+
  MMETSP0890-20130614|2277_1  91 TSLYNLARLLKDKGIYSEAKPLYERAI 117
                 679***********************8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.013        16      11      31 ..      58      78 ..      43      81 .. 0.86
   2 !   13.5   0.1   3.4e-05     0.042       3      28 ..      92     117 ..      90     117 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.013
                HHHTT-HHHHHHHHH---HHH CS
   PF13181.1 11 YrqlGdydkAkeylekalelk 31
                + +  dyd+A+e+l  a +l+
  MMETSP0890-20130614|2277_1 58 FISSDDYDLAYEHLSAARDLA 78
                56778********98887665 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.4e-05
                 -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekal 28 
                 ++ynl+++++++G y++Ak  +e+a+
  MMETSP0890-20130614|2277_1  92 SLYNLARLLKDKGIYSEAKPLYERAI 117
                 79*********************996 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.57     7e+02       3      20 ..      47      69 ..      45      83 .. 0.67
   2 !   16.7   0.0   3.2e-06     0.004       1      34 [.      92     125 ..      92     127 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.57
   PF13176.1  3 lnLarlysr.....lgdyekAie 20
                +n+++l+++     + dy+ A e
  MMETSP0890-20130614|2277_1 47 SNIGSLFFKkvfisSDDYDLAYE 69
                67777777655555666665555 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 3.2e-06
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +l+nLarl  + g y++A  lyera+++++d  +
  MMETSP0890-20130614|2277_1  92 SLYNLARLLKDKGIYSEAKPLYERAIVIWEDIHG 125
                 79**********************9999998765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.3e-06    0.0016      10      59 ..      61     118 ..      56     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.3e-06
   PF13432.1  10 aGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59 
                 + dyd A+++l+aa++la         + a  l++la++l ++g + eA  l+++a+ 
  MMETSP0890-20130614|2277_1  61 SDDYDLAYEHLSAARDLAeklygnhsEHFATSLYNLARLLKDKGIYSEAKPLYERAIV 118
                 568999************9887766666**********************99999984 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0         1   1.3e+03      15      24 ..      63      72 ..      47      86 .. 0.55
   2 ?   12.2   0.0   0.00015      0.18       2      27 ..      92     117 ..      91     119 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1
                HHHHHHHHHH CS
   PF13174.1 15 dtdeAleale 24
                d+d A e l 
  MMETSP0890-20130614|2277_1 63 DYDLAYEHLS 72
                5555555443 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerli 27 
                 +ly+la++++  g ++eA+ ++er i
  MMETSP0890-20130614|2277_1  92 SLYNLARLLKDKGIYSEAKPLYERAI 117
                 69*********88**********987 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   5.4e-05     0.067      31      97 ..      41     109 ..      24     121 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.4e-05
   PF04781.7  31 kalllhelqGeif.vklakktensdvkftYllasvecfseavllssla.AlsLfelakelgsvkyYkka 97 
                 +++ lh+  G++f +k+   +++ d+    l a+ + + + +  +s   A sL++la+ l+ +  Y +a
  MMETSP0890-20130614|2277_1  41 ELFHLHSNIGSLFfKKVFISSDDYDLAYEHLSAARDLAEKLYGNHSEHfATSLYNLARLLKDKGIYSEA 109
                 4567888889876156778899**************9999987655444************99999887 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00022      0.27      31      83 ..      54     115 ..      20     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00022
                 HHHHHHH---HHHHHHHHHC.....TSHCHCB....HHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  31 lAlclylngeykrAyellrk.....leldsss....lgcryllArcllklgkydeAiavLek 83 
                   +++ ++ +y+ Aye l+      ++l  ++    +++ y lAr l + g y+eA  ++e+
  MMETSP0890-20130614|2277_1  54 FKKVFISSDDYDLAYEHLSAardlaEKLYGNHsehfATSLYNLARLLKDKGIYSEAKPLYER 115
                 47899999999999999988999996666666566777888889999999999999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 502.09
//
Query:       MMETSP0890-20130614|2285_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-37  125.7   0.3    1.4e-23   82.5   0.1    2.0  2  PF13424.1  Tetratricopeptide repeat
    3.4e-23   80.6   0.4    2.7e-09   36.4   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    4.2e-18   63.9   2.7    1.3e-08   33.9   0.3    2.2  2  PF00515.23 Tetratricopeptide repeat
    6.2e-15   54.4   1.7    4.8e-14   51.6   1.1    2.0  1  PF13414.1  TPR repeat
    9.3e-15   53.1   1.0    1.1e-06   27.9   0.1    2.3  2  PF07719.12 Tetratricopeptide repeat
    3.9e-14   51.1   0.1    4.3e-06   25.9   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
      6e-10   38.0   1.2    0.00024   20.5   0.2    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.3e-09   37.6   0.2     0.0012   19.1   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    5.5e-09   36.3   0.1      7e-09   36.0   0.0    1.3  1  PF13432.1  Tetratricopeptide repeat
    6.6e-08   32.0   5.1      0.002   18.0   0.2    3.4  3  PF13431.1  Tetratricopeptide repeat
    1.7e-05   24.4   0.1       0.03   14.0   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
    9.6e-05   22.4   0.2       0.53   10.7   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
     0.0002   21.3   0.1    0.00097   19.1   0.0    1.8  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00025   20.0   0.1       0.16   10.7   0.0    2.0  2  PF04910.9  Transcriptional repressor TCF25
    0.00048   19.8   0.2       0.51   10.1   0.0    2.2  2  PF04212.13 MIT (microtubule interacting and transport) domain
     0.0014   18.9   0.1        1.5    9.1   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
     0.0015   18.4   0.0       0.76    9.7   0.0    2.3  1  PF12688.2  Tetratrico peptide repeat
     0.0018   18.3   0.0        2.2    8.8   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
     0.0055   15.8   0.1       0.16   11.1   0.0    2.2  2  PF10516.4  SHNi-TPR
  ------ inclusion threshold ------
      0.037   13.7   0.1       0.52   10.0   0.0    2.0  2  PF13371.1  Tetratricopeptide repeat
      0.055   12.4   0.1       0.62    8.9   0.0    1.9  2  PF13429.1  Tetratricopeptide repeat
        0.1   12.2   0.0        1.7    8.3   0.0    2.0  2  PF12968.2  Domain of Unknown Function (DUF3856)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.5e-15   1.5e-12      33      77 ..       2      47 ..       1      48 [. 0.94
   2 !   82.5   0.1   2.2e-26   1.4e-23       1      78 []      12      90 ..      12      90 .. 0.98

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 2.5e-15
   PF13424.1 33 el.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                e+  +++g++hp++a++l nla l++ +g+ydeA +++++Al+i+e
  MMETSP0890-20130614|2285_1  2 EIdEKTYGPNHPQVATTLKNLAALLENQGKYDEAMPFFRRALNIRE 47
                677899**************************************98 PP

  == domain 2    score: 82.5 bits;  conditional E-value: 2.2e-26
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hp++at+l nla +l+ +g+ydeA  ++++al++  ++l ++hp++a +lnnla l+  +g+ydeA +++e+A++i+ek
  MMETSP0890-20130614|2285_1 12 HPQVATTLKNLAALLENQGKYDEAMPFFRRALNIrEEKLCPNHPQVAESLNNLAGLLKNQGKYDEAMPLYERAIQIDEK 90
                89********************************999999************************************986 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.019        12      30      42 .]       2      14 ..       1      14 [. 0.87
   2 !   36.4   0.0   4.4e-12   2.7e-09       1      41 [.      15      55 ..      15      56 .. 0.96
   3 !   35.7   0.0   7.4e-12   4.6e-09       1      34 [.      57      90 ..      57      91 .] 0.94

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.019
   PF13374.1 30 airrrllGddHPd 42
                +i ++ +G++HP+
  MMETSP0890-20130614|2285_1  2 EIDEKTYGPNHPQ 14
                6789********5 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 4.4e-12
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
                +a++l nLA +l ++g+y+eA +++++al ir++ l ++HP
  MMETSP0890-20130614|2285_1 15 VATTLKNLAALLENQGKYDEAMPFFRRALNIREEKLCPNHP 55
                79********************************9999999 PP

  == domain 3    score: 35.7 bits;  conditional E-value: 7.4e-12
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +a +lnnLA +l ++g+y+eA +l+e+a  i ++
  MMETSP0890-20130614|2285_1 57 VAESLNNLAGLLKNQGKYDEAMPLYERAIQIDEK 90
                79**************************999876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   2.8e-10   1.7e-07       2      32 ..      17      47 ..      16      49 .. 0.91
   2 !   33.9   0.3   2.2e-11   1.3e-08       1      32 [.      58      89 ..      58      90 .. 0.96

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.8e-10
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                 +l+nl++++ ++gkydeA  ++++AL +++
  MMETSP0890-20130614|2285_1 17 TTLKNLAALLENQGKYDEAMPFFRRALNIRE 47
                689************************8875 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 2.2e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a++l+nl+ ++ ++gkydeA   ye+A+++++
  MMETSP0890-20130614|2285_1 58 AESLNNLAGLLKNQGKYDEAMPLYERAIQIDE 89
                799***************************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   1.1   7.8e-17   4.8e-14       2      68 ..      15      88 ..      14      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 7.8e-17
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAlel.....dpnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                +A +lk+l+  l ++g+ydeA  ++++Al +     +pn+++    ++nlA ++ ++g +y+eA+  ye+A+++d
  MMETSP0890-20130614|2285_1 15 VATTLKNLAALLENQGKYDEAMPFFRRALNIreeklCPNHPQvaeSLNNLAGLLKNQG-KYDEAMPLYERAIQID 88
                6889*************************8633333688877777*************.6**************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.5e-08   1.6e-05       2      31 ..      17      46 ..      16      54 .. 0.91
   2 !   27.9   0.1   1.8e-09   1.1e-06       1      32 [.      58      89 ..      58      91 .] 0.95

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.5e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                  l nl+ +++++g+y+eA  +f++Al + 
  MMETSP0890-20130614|2285_1 17 TTLKNLAALLENQGKYDEAMPFFRRALNIR 46
                5789***********************886 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 1.8e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldP 32
                ae l+nl+ ++ ++g+y+eA  ++e+A+++d 
  MMETSP0890-20130614|2285_1 58 AESLNNLAGLLKNQGKYDEAMPLYERAIQIDE 89
                799***************************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.2e-08   2.6e-05       1      32 [.      18      49 ..      18      53 .. 0.90
   2 !   25.9   0.0     7e-09   4.3e-06       1      29 [.      60      88 ..      60      91 .] 0.88

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.2e-08
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdp 32
                +l nLa l +++g+y++A  +++raL ++++ 
  MMETSP0890-20130614|2285_1 18 TLKNLAALLENQGKYDEAMPFFRRALNIREEK 49
                799*********************99888765 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 7e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLalt 29
                +l+nLa l  ++g+y++A  lyera++++
  MMETSP0890-20130614|2285_1 60 SLNNLAGLLKNQGKYDEAMPLYERAIQID 88
                79**********************66554 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.2e-06    0.0039       4      31 ..      19      46 ..      16      49 .. 0.88
   2 !   20.5   0.2   3.9e-07   0.00024       2      32 ..      59      89 ..      58      91 .] 0.93

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.2e-06
                TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                + nl+ ++++ G+yd+A+ ++++al + 
  MMETSP0890-20130614|2285_1 19 LKNLAALLENQGKYDEAMPFFRRALNIR 46
                668999******************9875 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 3.9e-07
                --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelkp 32
                ++++nl+ ++++ G+yd+A+  +e+a++++ 
  MMETSP0890-20130614|2285_1 59 ESLNNLAGLLKNQGKYDEAMPLYERAIQIDE 89
                7899*************************96 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.9e-06    0.0012       3      37 ..      18      57 ..      15      64 .. 0.80
   2 !   17.6   0.0   6.1e-06    0.0038       4      32 ..      61      89 ..      57      91 .] 0.88

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.9e-06
   PF13428.1  3 allalarallalGdpdeAiallrrala.....laPddaea 37
                +l  la++l+++G +deA+  +rral      l+P+++++
  MMETSP0890-20130614|2285_1 18 TLKNLAALLENQGKYDEAMPFFRRALNireekLCPNHPQV 57
                5678*********************854444478888776 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 6.1e-06
   PF13428.1  4 llalarallalGdpdeAiallrralalaP 32
                l  la +l ++G +deA+ l++ra++ + 
  MMETSP0890-20130614|2285_1 61 LNNLAGLLKNQGKYDEAMPLYERAIQIDE 89
                6789*********************9876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.1e-11     7e-09       3      61 ..      22      88 ..      11      91 .] 0.96

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.1e-11
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalala 61
                lA +l ++G+ydeA + +++al           P+ ae l +la +l  +g++deA  l+++a++++
  MMETSP0890-20130614|2285_1 22 LAALLENQGKYDEAMPFFRRALNIReeklcpnhPQVAESLNNLAGLLKNQGKYDEAMPLYERAIQID 88
                899************************************************************9876 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00026      0.16       9      32 ..      12      35 ..       8      36 .. 0.83
   2 !   18.0   0.2   3.3e-06     0.002       9      32 ..      51      77 ..      38      78 .. 0.82
   3 ?    2.7   0.0      0.25   1.6e+02       1      10 [.      80      89 ..      80      90 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00026
   PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
                +P  a  + nLA ll n+G+++eA
  MMETSP0890-20130614|2285_1 12 HPQVATTLKNLAALLENQGKYDEA 35
                455577777*************99 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.3e-06
   PF13431.1  9 dPnn...adaynnLAelllnnGdleeA 32
                +Pn+   a+++nnLA ll+n+G+++eA
  MMETSP0890-20130614|2285_1 51 CPNHpqvAESLNNLAGLLKNQGKYDEA 77
                4555555******************99 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.25
   PF13431.1  1 lyekaleldP 10
                lye+a+++d 
  MMETSP0890-20130614|2285_1 80 LYERAIQIDE 89
                7*****9985 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.8e-05      0.03       4      35 ..      19      48 ..      18      49 .. 0.88
   2 !    8.6   0.0    0.0024       1.5      13      27 ..      70      82 ..      64      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.8e-05
                HHHHHHHHHHTT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7  4 lyslAaefynkkkyqeArelfsYallaildke 35
                l+ lAa + n++ky+eA  +  ++ + ++++e
  MMETSP0890-20130614|2285_1 19 LKNLAALLENQGKYDEAMPF--FRRALNIREE 48
                677999999***********..8899999876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0024
                HTT-HHHHHHH..HH CS
   PF07720.7 13 nkkkyqeArelfsYa 27
                n++ky+eA  l  Y+
  MMETSP0890-20130614|2285_1 70 NQGKYDEAMPL--YE 82
                89******999..76 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015      0.93       5      28 ..      21      44 ..      21      46 .. 0.88
   2 !   10.7   0.0   0.00086      0.53       6      28 ..      64      86 ..      59      88 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la +++++g++deA+  ++r ++
  MMETSP0890-20130614|2285_1 21 NLAALLENQGKYDEAMPFFRRALN 44
                5788889999***********986 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00086
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la +++++g++deA+ ++er i+
  MMETSP0890-20130614|2285_1 64 LAGLLKNQGKYDEAMPLYERAIQ 86
                566777899***********997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.6e-06   0.00097      28      83 ..      19      83 ..       4      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.6e-06
                HHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2 28 lyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83
                l +lA  l ++g+y++A+ ++r+      ++l +++++ +     lA  l  +gkydeA  ++e+
  MMETSP0890-20130614|2285_1 19 LKNLAALLENQGKYDEAMPFFRRalnireEKLCPNHPQVAEslnNLAGLLKNQGKYDEAMPLYER 83
                55678889999999999999999988887777778877777433455777788999999988887 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0011       0.7      35      73 ..      11      49 ..      10      56 .. 0.88
   2 !   10.7   0.0   0.00026      0.16      35      69 ..      53      87 ..      47      91 .] 0.91

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0011
   PF04910.9 35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfilerv 73
                ++P    tL +l+ ++++qg++ +A+ +  raL i e+ 
  MMETSP0890-20130614|2285_1 11 NHPQVATTLKNLAALLENQGKYDEAMPFFRRALNIREEK 49
                5899999**************************887765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00026
   PF04910.9 35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfi 69
                ++P   ++L +l+ ++++qg++ +A+ l era+ i
  MMETSP0890-20130614|2285_1 53 NHPQVAESLNNLAGLLKNQGKYDEAMPLYERAIQI 87
                79999***************************987 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0039       2.4      10      34 ..      21      45 ..      14      49 .. 0.84
   2 !   10.1   0.0   0.00082      0.51      17      34 ..      70      87 ..      65      90 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0039
                HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF04212.13 10 kkAveaDeagkyeeAlelYkeAlel 34
                + A   +++gky+eA    + Al++
  MMETSP0890-20130614|2285_1 21 NLAALLENQGKYDEAMPFFRRALNI 45
                667789***********99999986 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00082
                HTT-HHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlel 34
                ++gky+eA  lY+ A+++
  MMETSP0890-20130614|2285_1 70 NQGKYDEAMPLYERAIQI 87
                689*************96 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0024       1.5      65      84 ..      11      30 ..       6      31 .. 0.91
   2 !    9.0   0.0    0.0026       1.6      45      84 ..      33      72 ..      25      72 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0024
   PF14357.1 65 eHPklagtlrnildsLanmG 84
                +HP++a tl+n++  L n G
  MMETSP0890-20130614|2285_1 11 NHPQVATTLKNLAALLENQG 30
                7***************9865 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0026
   PF14357.1 45 eaedeslaerlneaverFeaeHPklagtlrnildsLanmG 84
                ++  + ++  ln   e+   +HP++a+ l+n++  L+n G
  MMETSP0890-20130614|2285_1 33 DEAMPFFRRALNIREEKLCPNHPQVAESLNNLAGLLKNQG 72
                555666777788888899999************9999865 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0012      0.76       6      28 ..      63      85 ..      58      88 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0012
   PF12688.2  6 eragarDstGeeakAvplYrrAl 28
                + ag     G+ ++A+plY+rA+
  MMETSP0890-20130614|2285_1 63 NLAGLLKNQGKYDEAMPLYERAI 85
                678999999************97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0036       2.2       6      26 .]      21      41 ..      18      41 .. 0.91
   2 !    7.7   0.0     0.008         5       3      26 .]      60      83 ..      58      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0036
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                +LA +l  +G +deA   ++r
  MMETSP0890-20130614|2285_1 21 NLAALLENQGKYDEAMPFFRR 41
                79*************988876 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.008
                HH---HHHHHH-------HHHHHT CS
   PF07721.9  3 allaLArallalGdldeAraller 26
                 l +LA +l  +G +deA  l er
  MMETSP0890-20130614|2285_1 60 SLNNLAGLLKNQGKYDEAMPLYER 83
                5679999***********999887 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00025      0.16      15      33 ..      30      48 ..      27      52 .. 0.91
   2 ?    2.6   0.0      0.11        70      14      30 ..      71      87 ..      59      91 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
   PF10516.4 15 EnFpqAveDlrkaLeLreq 33
                +++++A   +r+aL++re+
  MMETSP0890-20130614|2285_1 30 GKYDEAMPFFRRALNIREE 48
                79***************98 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.11
   PF10516.4 14 nEnFpqAveDlrkaLeL 30
                ++++++A   +++a+++
  MMETSP0890-20130614|2285_1 71 QGKYDEAMPLYERAIQI 87
                579****9999999998 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00084      0.52      32      66 ..      19      58 ..      11      65 .. 0.85
   2 ?    2.8   0.0      0.16        98      35      58 ..      64      87 ..      54      90 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00084
   PF13371.1 32 rRDrGlllaqlgclaaAaedLeafl.....elcpdapdae 66
                +   + ll+ +g + +A+  ++++l     +lcp++p+++
  MMETSP0890-20130614|2285_1 19 LKNLAALLENQGKYDEAMPFFRRALnireeKLCPNHPQVA 58
                567899*******************999999999888765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.16
   PF13371.1 35 rGlllaqlgclaaAaedLeaflel 58
                 + ll  +g + +A+  +e++++ 
  MMETSP0890-20130614|2285_1 64 LAGLLKNQGKYDEAMPLYERAIQI 87
                567778888888888888887754 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0044       2.7     144     176 ..      14      46 ..       3      51 .. 0.83
   2 ?    8.9   0.0     0.001      0.62     113     176 ..      19      88 ..      16      91 .] 0.70

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0044
   PF13429.1 144 qsalfllaraellrqegqkkkAlrllrralalk 176
                 q a++l  +a+ll+++g+ ++A+  +rral+  
  MMETSP0890-20130614|2285_1  14 QVATTLKNLAALLENQGKYDEAMPFFRRALNIR 46 
                 567888899999*****************9865 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.001
   PF13429.1 113 Lqsalellerakdykrieellasle..ekeaae....qsalfllaraellrqegqkkkAlrllrralalk 176
                 L++   lle++++y++   +++++   ++e++     q a  l  +a ll+++g+ ++A+ l++ra++ +
  MMETSP0890-20130614|2285_1  19 LKNLAALLENQGKYDEAMPFFRRALniREEKLCpnhpQVAESLNNLAGLLKNQGKYDEAMPLYERAIQID 88 
                 5666677888888888888888866332333223344778888888889999999999999999988765 PP

>> PF12968.2  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0027       1.7     105     133 ..      21      49 ..      13      58 .. 0.84
   2 ?    2.4   0.0      0.18   1.1e+02     109     127 ..      67      85 ..      56      91 .] 0.59

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0027
   PF12968.2 105 sravaleelGrkeealkefrkagemiaer 133
                 + a+ le+ G+ +ea+  fr a ++ +e+
  MMETSP0890-20130614|2285_1  21 NLAALLENQGKYDEAMPFFRRALNIREEK 49 
                 5577799***************9987776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.18
   PF12968.2 109 aleelGrkeealkefrkag 127
                  l++ G+ +ea+  ++ a 
  MMETSP0890-20130614|2285_1  67 LLKNQGKYDEAMPLYERAI 85 
                 4555666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 298.72
//
Query:       MMETSP0890-20130614|2286_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.072   12.7   0.1      0.083   12.5   0.1    1.1  1  PF02017.10 CIDE-N domain


Domain annotation for each model (and alignments):
>> PF02017.10  CIDE-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.1e-06     0.083      34      70 ..       7      43 ..       3      47 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.1e-06
  PF02017.10 34 lelkkklvtLvLeeDGTevddedyFqtledntelvvl 70
                ++ +++  t+ L+e G + d+e  F+ l++n   ++l
  MMETSP0890-20130614|2286_1  7 FNYEQTFGTVNLYEEGLIFDEEVSFNGLNENLDRLIL 43
                666778889***********999*******9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 171.63
//
Query:       MMETSP0890-20130614|2290_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.5   0.3      0.053   13.0   0.2    1.2  1  PF00836.14 Stathmin family


Domain annotation for each model (and alignments):
>> PF00836.14  Stathmin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.9e-06     0.053      25      74 ..      54     103 ..      36     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.9e-06
                 S------SS--SS-------TTTTTTTTTCHHHHHHHHHCTTCTTCCCHH CS
  PF00836.14  25 skdsvpelslsspkkkdlsleeiqkkleaaeerrksqeaevlkqlaekre 74 
                 +k +   l  +   k+ +slee ++k++a e  +k+++ e  k+  + re
  MMETSP0890-20130614|2290_1  54 AKYGSKSLDETLAEKQGISLEEFNRKFDAYEASKKMNQEEWAKKWINYRE 103
                 55566667778899***********************9999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.76
# Mc/sec: 488.73
//
Query:       MMETSP0890-20130614|2283_1  [L=1036]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-47  160.8   0.0    3.4e-31  107.7   0.0    2.4  2  PF00899.16 ThiF family
    1.1e-37  127.3   7.8    1.3e-27   95.0   0.1    2.9  3  PF02134.16 Repeat in ubiquitin-activating (UBA) protein
    3.2e-32  111.2   0.0    6.4e-32  110.2   0.0    1.5  1  PF09358.5  Ubiquitin-activating enzyme e1 C-terminal domain
    2.5e-21   74.6   1.7      1e-17   63.1   0.1    2.8  2  PF10585.4  Ubiquitin-activating enzyme active site
  ------ inclusion threshold ------
      0.029   13.7   0.0      0.054   12.8   0.0    1.3  1  PF02301.13 HORMA domain
      0.052   13.0   0.1        0.1   12.0   0.1    1.4  1  PF09732.4  Cactus-binding C-terminus of cactin protein
      0.063   12.3   0.0         10    5.0   0.0    2.4  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   6.6e-17   1.3e-13       2     124 ..      32     159 ..      31     169 .. 0.79
   2 !  107.7   0.0   1.7e-34   3.4e-31       3     133 ..     435     574 ..     433     577 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 6.6e-17
  PF00899.16   2 eskvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeriteenleellkdv...DlvvdalDn.iearl.llndacvkkgkplisag 124
                 es+vl++G+ glGse+a++ + aGv+ +tl+D   v + ++      r+e+vg+p+ae+a  rl+++n +v+v+ ++++ + +   +  +++     vv  +D   e+++ + n+ac++ g  +i a 
  MMETSP0890-20130614|2283_1  32 ESHVLIIGLNGLGSEVAKNVILAGVKAVTLIDSNPVTWFDIGANAYVRSEEVGRPRAETALPRLKALNTHVNVSIMPSFSSMNCGVDGWRSLvtgKTVVVMCDPmSEEEIsICNTACRECGAAFIAAE 159
                 689************************************************************************99998554444444322223455555554244444145668888887777765 PP

  == domain 2    score: 107.7 bits;  conditional E-value: 1.7e-34
  PF00899.16   3 skvlvvGaGglGseaaeaLaraGv.....gkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeri...teenleellk.dvDlvvdalDniearlllndacvkkgkplisagvlgfkgqvv 133
                 +k ++vGaG++G+e+++  a aG+     g +t+ D+D++e sNl Rqllfr++d+gk K  +a+ ++ e+np+++++++e r+   te+ +++ ++ ++D +  alDn++arl++++ cv +gkp++++g+lg+kg++ 
  MMETSP0890-20130614|2283_1 435 QKYFLVGAGAIGCEILKIWALAGLssgtdGFITITDMDRIEKSNLSRQLLFRTSDIGKAKSSCAASAALELNPHLQIKPLELRVgtdTENVFDDAFYaSLDGICTALDNVDARLYVDSKCVFYGKPMLESGTLGTKGNTQ 574
                 6889********************999999******************************************************8877777888885488***********************************99874 PP

>> PF02134.16  Repeat in ubiquitin-activating (UBA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.9   3.8e+03      44      66 ..     361     383 ..     349     384 .. 0.83
   2 !   36.5   0.2   1.2e-12   2.3e-09       1      61 [.     718     779 ..     718     786 .. 0.85
   3 !   95.0   0.1   6.7e-31   1.3e-27       2      63 ..     820     881 ..     819     884 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.9
  PF02134.16  44 aiattnAivaaivvlelikvleg 66 
                 +ia+ ++   + + +e++k+++g
  MMETSP0890-20130614|2283_1 361 EIAPISSFLGGVIGQEALKACTG 383
                 68899999999999999999887 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 1.2e-12
  PF02134.16   1 kfdkddddhvdfvaaaanlRaenfgik.e.ksrnevkqia.gnIIPaiattnAivaaivvleli 61 
                 +fd++d  h++++ aaa lRa+n+gi  + ++ ++ kqi+    +Pa+ ++ +   +i+++ ++
  MMETSP0890-20130614|2283_1 718 SFDPNDILHLNYIKAAAALRAYNYGIFpTaMTDEQFKQILaTIHVPAFKPRDG--IKIAANDAE 779
                 59************************96589*********7788*********..555555444 PP

  == domain 3    score: 95.0 bits;  conditional E-value: 6.7e-31
  PF02134.16   2 fdkddddhvdfvaaaanlRaenfgikeksrnevkqiagnIIPaiattnAivaaivvlelikv 63 
                 fdkddd h++fvaa++nlRa+n++i+e++ ++ + iag+IIPaiatt+A v+++v++elik+
  MMETSP0890-20130614|2283_1 820 FDKDDDAHMKFVAACSNLRARNYKIPEADLHQSRLIAGKIIPAIATTTALVSGLVCIELIKL 881
                 ************************************************************98 PP

>> PF09358.5  Ubiquitin-activating enzyme e1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   3.3e-35   6.4e-32       2     125 .]     897    1031 ..     896    1031 .. 0.94

  Alignments for each domain:
  == domain 1    score: 110.2 bits;  conditional E-value: 3.3e-35
   PF09358.5    2 rnaFlnlAlPffifsePieapkkki.........kdkeftlWdrieveg..dltlkelidyfeekyglevsmisvgvkllYssfskekkkerlekkiselveevskkklpeekkyldlevscededgedvevPsi 125 
                  + aF nlAlP+f fseP +++++            + ++t+W+ i++++  ++tlkel+d f +++gle sm+s+gv++l+ssf  +k +er+ ++i+ +ve+v+kk++ ++kkyl lev+ +ded e+ve+P++
  MMETSP0890-20130614|2283_1  897 KCAFANLALPLFTFSEPQPPATYLAkipggrrkgFEWKWTCWSCINIDNnpNMTLKELVDFFTDEFGLELSMLSHGVSILFSSFAAAKARERMPMTIKAIVETVTKKPILPNKKYLTLEVMLNDEDFEEVELPYV 1031
                  679*****************9986567999874445556**********888*********************************************************************************97 PP

>> PF10585.4  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.1   5.2e-21     1e-17       2      45 .]     580     623 ..     579     623 .. 0.97
   2 !   10.1   0.1   0.00018      0.34      26      44 ..     665     683 ..     661     684 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 5.2e-21
   PF10585.4   2 vTecYecspdpeeksiPvCTlrsfPseieHCIeWArdlFeklFg 45 
                 +Te Y+ ++dp+e+s+PvCTl++fP+ ieH+++WArd Fe+ F+
  MMETSP0890-20130614|2283_1 580 ITEPYGATRDPPEQSVPVCTLKNFPNRIEHTLQWARDWFEGAFK 623
                 79***************************************995 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00018
   PF10585.4  26 PseieHCIeWArdlFeklF 44 
                 P  +e CI WAr +F++ F
  MMETSP0890-20130614|2283_1 665 PLAFEDCIRWARLQFQECF 683
                 777888**********999 PP

>> PF02301.13  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05     0.054     125     177 ..     980    1032 ..     958    1034 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-05
                  -THHHHHHHHHHHHHHHHHHHTTSS--..-S-EEEEEEEEE..STTSCSST.T CS
  PF02301.13  125 ksakeikeeirallrqlitlvqflppLpeertltmkllyytdtppdyeppgfk 177 
                    a +++e +   ++ ++ +v++ p Lp++++lt++++++++  +++e+p+++
  MMETSP0890-20130614|2283_1  980 FAAAKARERMPMTIKAIVETVTKKPILPNKKYLTLEVMLNDEDFEEVELPYVR 1032
                  557788999999*****************************988899999865 PP

>> PF09732.4  Cactus-binding C-terminus of cactin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.3e-05       0.1      30     106 ..     250     328 ..     242     346 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.3e-05
   PF09732.4  30 ydsdnpPPkivqgYkFnifYpdLidkskapkykiekled.neetvllk.fsag...kpYediafkivnkeWdlskkkgfkss 106
                  d +++PP +  gY  +i+ p  i+++   ++ i ++++ ++e++++  f  +   +   diaf+ + +eW+++++ ++  +
  MMETSP0890-20130614|2283_1 250 LDATQLPPYVSSGYVTQIKQPRTIEHKSYAHF-IGSDNQyRHEATIISdFA-KlerPATLDIAFRAL-REWRTKNNGAYPVT 328
                 58899*******************97666655.555555477777775243.22337789*****87.89**9998755433 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0054        10      28      63 ..      24      59 ..       7      82 .. 0.79
   2 ?    4.5   0.0    0.0077        15      30      56 ..     428     454 ..     416     489 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0054
                CG-B-.GGGSEEE-B-------HHHHHHHH---EEE CS
  PF02826.14 28 allgkelsgktvGiiGlGrIGqavakrlkafgmkvl 63
                +  +++++++ v iiGl  +G++vak +   g+k +
  MMETSP0890-20130614|2283_1 24 REGQRRMAESHVLIIGLNGLGSEVAKNVILAGVKAV 59
                55678999******************9988887543 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0077
                 -B-.GGGSEEE-B-------HHHHHHH CS
  PF02826.14  30 lgkelsgktvGiiGlGrIGqavakrlk 56 
                 + ++l+g++  ++G+G+IG ++ k+ +
  MMETSP0890-20130614|2283_1 428 VTEKLRGQKYFLVGAGAIGCEILKIWA 454
                 56789*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1036 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.48u 0.36s 00:00:01.84 Elapsed: 00:00:01.45
# Mc/sec: 1712.16
//
Query:       MMETSP0890-20130614|2289_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.6   2.9      0.036   13.5   2.0    1.5  1  PF02321.13 Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> PF02321.13  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.0   2.6e-06     0.036     123     184 ..      42     103 ..      39     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.6e-06
  PF02321.13 123 qlelakellklaekalelaearykaGlislldvlqaevrllqaraellqaeqqlqlaraqLe 184
                  ++++++l+++ +k++e a ++ ++ l  + +v++a++++ +a+++ ++ ++++++a+ + +
  MMETSP0890-20130614|2289_1  42 YIKVLERLVEAERKVAEVALEAKNVALEAKNEVVEAKNEVVEAKRKVVEVKNEVIMAKDEVM 103
                 469***************************88***********************9986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1244  (0.0909889); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:01.85
# Mc/sec: 330.31
//
Query:       MMETSP0890-20130614|2296_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-11   42.7   0.2    3.2e-11   42.5   0.2    1.1  1  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.2   2.3e-15   3.2e-11       1      39 []       6      44 ..       6      44 .. 0.97

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 2.3e-15
                TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                g+ k+tl gHt+ V++ +fs dg++++s+S+D t r+Wd
  MMETSP0890-20130614|2296_1  6 GQIKRTLAGHTDEVRSSCFSADGNRVISASDDQTSRIWD 44
                5789**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.54
# Mc/sec: 244.07
//
Query:       MMETSP0890-20130614|2291_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:01.32
# Mc/sec: 1298.03
//
Query:       MMETSP0890-20130614|2304_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-25   89.7   0.0    1.1e-25   89.6   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    2.4e-06   27.1   0.0     0.0005   19.6   0.0    2.1  2  PF13855.1  Leucine rich repeat
     0.0011   18.9   0.0       0.05   13.6   0.0    2.3  2  PF05593.9  RHS Repeat
  ------ inclusion threshold ------
        1.4    8.3   9.7         35    3.8   0.3    4.3  4  PF01744.15 GLTT repeat (6 copies)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   3.2e-29   1.1e-25      15      95 ..       2      82 ..       1      83 [] 0.98

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 3.2e-29
   PF13306.1 15 tsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipssltti 95
                t++t+p  +t+Ig +aF +c+sl+++tlp  lt+ig+yaF+ncsslt++++p  lt+ig +aF +c+s++++++p  ltti
  MMETSP0890-20130614|2304_1  2 TELTFPAGLTTIGYNAFGDCTSLTQVTLPVGLTTIGDYAFDNCSSLTQVSLPAGLTTIGRHAFLKCTSINQLTLPVGLTTI 82
                789***************************************************************************999 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0041        14      37      56 ..      10      29 ..       4      30 .. 0.78
   2 !   19.6   0.0   1.5e-07    0.0005      13      56 ..      33      75 ..      31      76 .. 0.97

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0041
   PF13855.1 37 lksispeafkgLpsLreLnL 56
                l++i  +af +++sL+++ L
  MMETSP0890-20130614|2304_1 10 LTTIGYNAFGDCTSLTQVTL 29
                67788888888888887766 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.5e-07
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+d aF ++s+L+  +L    l++i ++af +++s+ +L L
  MMETSP0890-20130614|2304_1 33 LTTIGDYAFDNCSSLTQVSLP-AGLTTIGRHAFLKCTSINQLTL 75
                89*******************.*******************998 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00069       2.4       8      32 ..       2      25 ..       2      34 .. 0.71
   2 !   13.6   0.0   1.5e-05      0.05       7      38 .]      24      57 ..      15      57 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00069
   PF05593.9  8 tevtdatGrvttYtYDaaGrlTalt 32
                te t + G +t  +Y+a+G  T+lt
  MMETSP0890-20130614|2304_1  2 TELTFPAGLTT-IGYNAFGDCTSLT 25
                67788999999.45******66664 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.5e-05
   PF05593.9  7 LtevtdatGrvt..tYtYDaaGrlTaltdpdGtt 38
                Lt+vt + G +t   Y+ D+   lT++  p+G t
  MMETSP0890-20130614|2304_1 24 LTQVTLPVGLTTigDYAFDNCSSLTQVSLPAGLT 57
                455999*******66************9999976 PP

>> PF01744.15  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012        40      16      21 ..       9      14 ..       7      19 .. 0.65
   2 ?    3.8   0.3      0.01        35       5      11 ..      31      37 ..      27      37 .. 0.60
   3 ?    3.4   0.1     0.013        45      16      21 ..      55      60 ..      47      61 .. 0.66
   4 ?    1.1   0.1     0.069   2.4e+02       6       9 ..      78      81 ..      76      82 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
  PF01744.15 16 GLtTlG 21
                GLtT+G
  MMETSP0890-20130614|2304_1  9 GLTTIG 14
                445544 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.01
  PF01744.15  5 lGLaTlG 11
                +GL+T+G
  MMETSP0890-20130614|2304_1 31 VGLTTIG 37
                4555544 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.013
  PF01744.15 16 GLtTlG 21
                GLtT+G
  MMETSP0890-20130614|2304_1 55 GLTTIG 60
                333333 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.069
  PF01744.15  6 GLaT 9 
                GL+T
  MMETSP0890-20130614|2304_1 78 GLTT 81
                4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        99  (0.00724108); expected 273.4 (0.02)
Passed bias filter:                       92  (0.00672908); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:03.89
# Mc/sec: 51.13
//
Query:       MMETSP0890-20130614|2298_1  [L=1749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-14   52.2   0.0    1.8e-13   50.4   0.0    2.0  1  PF00092.23 von Willebrand factor type A domain
      2e-13   50.6   0.0    5.2e-13   49.3   0.0    1.8  1  PF13519.1  von Willebrand factor type A domain
    8.5e-11   41.5   0.3    4.5e-10   39.1   0.0    2.3  3  PF07517.9  SecA DEAD-like domain
    2.5e-08   33.4   0.2    1.7e-07   30.7   0.1    2.6  2  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.092   12.5   0.8        0.4   10.4   0.1    2.5  2  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   6.7e-17   1.8e-13       3     168 ..    1556    1727 ..    1554    1737 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 6.7e-17
                  EEEEE-STTS-H......HHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEEE-----C---STHHHHHHHHHH...GEEEEEEEE--.SCCCHHHHHHCS-SSTTCCCB-STSS CS
  PF00092.23    3 vfvlDgSgSige......enfekvkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvillTDGksndggspeaaaaklrek...klgitvfgvGv.sdvdeeelrsiaskpdseghvfrltd 168 
                   f++D+SgS+g       +++  +++ i+ +i++l + ++++ ++l+ +s++ ++++  ++ ++k +l + v  ++ ++ ggt + +A+ + l+++  +   +  + +++++++TDG  +d+g   + ++ + +    +l+ ++ gvG  + + +++l+++a+ ++ e  +f  t+
  MMETSP0890-20130614|2298_1 1556 HFLIDVSGSMGSilsnqrTQLRVAQDGINHIIQNLLDERRGDTFSLMCFSDQYHEICLRQSVENKAALVNRV--DSLQIIGGTRLYTAFLHKLDQILGT--INEIDCQQFLFVFTDGATSDSGLFGQLKMLIDKIpdtGLKCILAGVGLgPGIYRDQLEALATSGKMELIFFESTE 1727
                  59************998888**************99****************99999888888988888888..888889*****************99..9999******************999999999988*997777777777788***********77755544444443 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.9e-16   5.2e-13       4     170 ..    1557    1734 ..    1554    1736 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.9e-16
   PF13519.1    4 lvlDvSgSMnae.dvsptrldaakaal....kdlldelpgdrvglvafsgsaelva..pltsdraalkaalnsldprlmpgggtnlaaalal.alellakad..grraaivlvtDGednssdie.....aasalkragikiyvvgvgsdega.eallkelaeatggryfdassdaeeleaalr 170 
                  +++DvSgSM      ++t l +a++ +    ++llde+ gd+++l+ fs+  + ++  +  +++aal + ++sl++     ggt+l+ a+     ++l   +  +++  ++++tDG+ ++s +       ++++ + g+k    gvg   g  +++l++la+ +    + ++ ++e++++a++
  MMETSP0890-20130614|2298_1 1557 FLIDVSGSMGSIlSNQRTQLRVAQDGInhiiQNLLDERRGDTFSLMCFSDQYHEIClrQSVENKAALVNRVDSLQII----GGTRLYTAFLHkLDQILGTINeiDCQQFLFVFTDGATSDSGLFgqlkmLIDKIPDTGLKCILAGVGLGPGIyRDQLEALATSGKMELIFFE-STEQISDAFD 1734
                  89*******88745579********9966666666678************999777435669*************97....6766666554404444444445569***********9977775556679999999999977777665544437**************9995.799***9997 PP

>> PF07517.9  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   1.5e+03     158     186 ..     300     330 ..     249     339 .. 0.74
   2 ?   -3.9   0.0       2.2   6.1e+03      15      62 ..     353     398 ..     351     428 .. 0.62
   3 !   39.1   0.0   1.6e-13   4.5e-10      73     154 ..     935    1021 ..     892    1041 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.53
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
   PF07517.9 158 keerreaYeaditY..gtnnelgfDyLrdnl 186
                  ++r+e Y++ i +  g+  el fD+ rd  
  MMETSP0890-20130614|2298_1 300 YDQRNEDYQQRINFikGAMDELYFDFKRDLA 330
                 689999****9988556789******99954 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.2
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07517.9  15 klqkiveeineleeelkklsdeeLrekteelkerlkegesldellpea 62 
                 kl++ ++  +++ ++ ++l +e++++ ++++++ l++g   +  l ea
  MMETSP0890-20130614|2298_1 353 KLSPHIQCTDTIIRNAQNLLEERFTNSVKKIRQILSDGAVEQ--LREA 398
                 555666666666677777777777777777777776553211..2222 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 1.6e-13
                  xxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07517.9   73 tlgmrhydvQllgglvl.....heGkiaemkTGeGKtlvatlpavlnaltgkgvhvvTvndyLAkrdaeemgplyeflglsvgvies 154 
                  ++ m+ + vQ+l+ l +        +++e+kTGeGK+ +    a++ a+ g +v vv  ++yL++rd + +++++e +g++  v  s
  MMETSP0890-20130614|2298_1  935 KVLMKAHPVQVLTILNIlsrpqLPNHLMEVKTGEGKSFILGSCAAVLAILGFNVAVVCYSEYLSSRDNALFNEIFEDFGIRNYVSYS 1021
                  56688899999999988788777789*****************************************************98655544 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.8   7.6e+03      23      33 ..     119     129 ..     118     143 .. 0.72
   2 !   30.7   0.1   6.3e-11   1.7e-07       2      62 ..     504     568 ..     503     570 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.8
                 HHHHHT-TTT- CS
  PF00226.26  23 klalkyHPDkn 33 
                  l++++HP   
  MMETSP0890-20130614|2298_1 119 SLCMRCHPQNL 129
                 599*****765 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 6.3e-11
                 HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC....HHHHHHHHHHHHHHHHHTSHHHHHH CS
  PF00226.26   2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde....eeaeekfkeineAyevLsdpekrae 62 
                 +Y+ Lg+++ a+  ++ +aY+   + +HPDk k+ +     e +e +k++ne  evL  +e+r  
  MMETSP0890-20130614|2298_1 504 HYARLGLDRLATHHDVNRAYKFRIKAVHPDKIKGGSeadrLEMNELSKKVNESKEVLLLEENRVA 568
                 8***********************************9**98899*************99999876 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.6     1e+04      19      33 ..    1035    1049 ..    1011    1057 .. 0.83
   2 ?   10.4   0.1   0.00015       0.4      34      78 .]    1382    1451 ..    1355    1451 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.6
                  HHHHHHHHHHHHTTT CS
  PF00271.26   19 qnereeileqfnagk 33  
                  +n re++le f++++
  MMETSP0890-20130614|2298_1 1035 ANIREKTLELFKRSS 1049
                  578999999999876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00015
                  S................SEEEESTTC-S---S.........TTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   34 s................kvlvatnvaerGidl.........pdvnvVinfdlprsvtsyiQriGRtgRag 78  
                                    v +at++++rG d+         ++ +++i++ l+  +++ iQ+ GRt+R g
  MMETSP0890-20130614|2298_1 1382 HsteeknyivkratvvgSVTLATSIFGRGTDFfsrdknlekNGGSHIIQTFLSLEKSEEIQIQGRTARQG 1451
                  0444445566666666689999999999999944443333344568888888****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1749 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.18u 0.41s 00:00:02.59 Elapsed: 00:00:01.80
# Mc/sec: 2328.46
//
Query:       MMETSP0890-20130614|2310_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-06   25.4   0.0      1e-05   25.0   0.0    1.2  1  PF05047.11 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain


Domain annotation for each model (and alignments):
>> PF05047.11  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.4e-10     1e-05       1      41 [.      32      82 ..      32     102 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 7.4e-10
  PF05047.11  1 aRkFwrknLprlkyhNPavpivvkrrsgdgPallaiYfng..........r 41
                +R F+ kn+ +lk  NP++p++ ++   ++P++ a Y+ g           
  MMETSP0890-20130614|2310_1 32 IRSFMGKNYYELKALNPQFPFLMRPIADREPYIQALYGKGaseyrsllgkS 82
                59***********************77779********9965555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 495.25
//
Query:       MMETSP0890-20130614|2316_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-06   26.6   0.1    1.1e-05   25.4   0.1    1.7  1  PF13857.1  Ankyrin repeats (many copies)
    0.00083   18.9   0.0       0.15   11.8   0.0    2.5  2  PF00023.25 Ankyrin repeat
      0.002   18.3   0.1     0.0056   16.8   0.1    1.7  1  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.026   13.6   2.6      0.037   13.1   1.8    1.1  1  PF04502.8  Family of unknown function (DUF572)
      0.071   13.5   0.2       0.45   11.0   0.2    2.1  2  PF13637.1  Ankyrin repeats (many copies)
       0.11   11.0   1.0       0.17   10.3   0.7    1.3  1  PF07267.6  Nucleopolyhedrovirus capsid protein P87
       0.93    8.5   6.8        1.7    7.7   4.7    1.4  1  PF06524.7  NOA36 protein
        6.1    5.9  11.0        8.7    5.4   7.7    1.1  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   6.3e-09   1.1e-05      11      56 .]      23      71 ..      14      71 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 6.3e-09
   PF13857.1 11 atdeggntpLhlAakggalevvrlLl...apgadlnlrdsdgltaldlA 56
                +td++g++ L++A++++a++++  Ll    ++  ++  d + +tal++A
  MMETSP0890-20130614|2316_1 23 YTDKRGRNILMVAIENNASDCCSTLLgtrGARQLCTRPDRNARTALHYA 71
                689*********************************************9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   8.5e-05      0.15       2      26 ..      28      53 ..      27      55 .. 0.93
   2 ?    4.7   0.0     0.016        27       3      12 ..      65      74 ..      63     103 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.5e-05
                SCBHHHHHHHTTHHHHHHHHHH.TTS CS
  PF00023.25  2 GfTPLHlAalrgnlevvklLls.qGA 26
                G+  L++A++++  ++++ Ll+ +GA
  MMETSP0890-20130614|2316_1 28 GRNILMVAIENNASDCCSTLLGtRGA 53
                8899*****************99888 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.016
                CBHHHHHHHT CS
  PF00023.25  3 fTPLHlAalr 12
                +T+LH+A l 
  MMETSP0890-20130614|2316_1 65 RTALHYAYLT 74
                7******876 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.3e-06    0.0056      25      67 ..      25      72 ..       9      82 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.3e-06
   PF12796.2 25 l..getpLhlAaeagnleivklLle........agadvnakd.kegntpLhlAv 67
                   g++ L++A+e++  ++++ Ll                    + +t+Lh+A 
  MMETSP0890-20130614|2316_1 25 DkrGRNILMVAIENNASDCCSTLLGtrgarqlcTR------PdRNARTALHYAY 72
                14588899999999999999999997443333333......2466679999995 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   2.1e-05     0.037     158     314 ..     100     298 ..      94     308 .. 0.49

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.1e-05
   PF04502.8 158 kelqsrkadvavesmLeal..rreekkeeeeeeeedeelikslslgleseedrrlakdedkedek................ekkketseksakssssakatdiekksaakkseeessskakkns..................esklkskkalkslv..vkkkaapeesksse........vaeseaeetseskqsagesslsa 314
                 +++q rk+ ++   +L  +  rr+   +e++ +   ++l + l +g +s+++rr+a  +d++d++                ++k +  ++s++++s  +++++ + +++ ++++ s  +    +                  +   ++ ++ ++l    + +++ ee++  +        + +s++  +++ +  ++ ssl++
  MMETSP0890-20130614|2316_1 100 QDIQDRKEMYSNSMKLALKrnRRHSSVNENDRDSIGHRLGNFLGIGGSSKKRRRRAGSGDENDDDdddeydenddelecvyHSKVDDAASSPHENSGRSPKSFRHGTNSAQNRSRSDGEDGSPKplfhrrpsslhsigssaaV--HHPHHHHHHLRhkYRHQKSHEEEQ--DpplppdeyIPNSDKDDENNCSGLSAFSSLAT 298
                 56677765555544444441133333333333334456777777778888888888874444443345577788888888844555555555555555555555444333333333322222224688888888888876431..222222222220022222222222..13455555555555555555555555555544 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.025        42      29      54 .]      23      48 ..       6      48 .. 0.85
   2 ?   11.0   0.2   0.00026      0.45       2      41 ..      29      71 ..      28      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.025
   PF13637.1 29 rtdesGntaLhiAalrgnieilklLl 54
                +td++G++ L +A++++  +++  Ll
  MMETSP0890-20130614|2316_1 23 YTDKRGRNILMVAIENNASDCCSTLL 48
                679**************999998776 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00026
   PF13637.1  2 ltaLhyaaisgrlelvklLlek.gid..inrtdesGntaLhiA 41
                +  L++a+  +  +++  Ll + g+   + r d++ +taLh+A
  MMETSP0890-20130614|2316_1 29 RNILMVAIENNASDCCSTLLGTrGARqlCTRPDRNARTALHYA 71
                778999999999********765777546666**********9 PP

>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7    0.0001      0.17     383     437 ..     127     178 ..      74     187 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
   PF07267.6 383 dlsaesslpdkddeasslaptekrkRrrvrklqelssdeeedssdeeevDkeker 437
                 +   + s+ ++  +   +++++k++Rrr+ +    ++++++d+++ +e+D+e e 
  MMETSP0890-20130614|2316_1 127 NENDRDSIGHRLGNFLGIGGSSKKRRRRAGSG---DENDDDDDDEYDENDDELEC 178
                 22333344455555566778889999999886...45555555688888888775 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.7   0.00098       1.7     216     307 ..      99     192 ..      91     212 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00098
   PF06524.7 216 gyeisetkdlslstrsykfgrqtr..geesddee....gygaykknlssdkygdaksvnygyesdddeeesaedydeeededddddeeedetsenege 307
                 + +i++ k++   + ++   r++r  + + +d +    + g++ + ++s+k+   ++++ g+e+ddd   ++++yde++de +   +++ +++ + ++
  MMETSP0890-20130614|2316_1  99 NQDIQDRKEMYSNSMKLALKRNRRhsSVNENDRDsighRLGNFLGIGGSSKKRRRRAGS-GDENDDD---DDDEYDENDDELECVYHSKVDDAASSPH 192
                 67888888886666666555544411444444441111345666666666665554433.3333433...3444455445545444444444444443 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.7    0.0051       8.7     150     281 ..     157     281 ..     147     301 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0051
                 XXXXXXXXXXX........................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX................... CS
  PF04652.11 150 pgppideeeeeeaesveeipdeqe.....aqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfp..spdeseasnkdsqlPsaPtyaqknssssqsvfPpsse 281
                 +g++ d+++++   +  e +de e     + ++++ss+++++  s+++  + +++ ++   sd+     s++  ++  ++  ++ +s+a +++p++ +     +   ++s ++ q+P+ P           +  P s++
  MMETSP0890-20130614|2316_1 157 SGDENDDDDDD---EYDENDDELEcvyhsKVDDAASSPHENSGRSPKSFRHGTNSAQNRSRSDGED--GSPKPLFHRRPSSLHSIGSSAAVHHPHHHHHHlrHKYRHQKSHEEEQDPPLPPD---------EYIPNSDK 281
                 44454444444...4444445544899888899999999999999999999999999999888766..888999999999999999999999999888866455555555568888888833.........33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:00.85
# Mc/sec: 902.16
//
Query:       MMETSP0890-20130614|2321_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   18.3   0.3     0.0033   17.8   0.2    1.4  1  PF06252.7 Protein of unknown function (DUF1018)
     0.0087   16.2   0.2      0.012   15.7   0.1    1.3  1  PF13291.1 ACT domain
  ------ inclusion threshold ------
      0.011   15.1   1.1      0.014   14.8   0.8    1.2  1  PF08216.6 Eukaryotic domain of unknown function (DUF1716)
      0.041   12.4   0.9      0.043   12.4   0.6    1.0  1  PF06542.6 Regulator protein PHA-1
      0.094   12.5   0.1       0.14   11.9   0.0    1.3  1  PF12836.2 Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> PF06252.7  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.2e-06    0.0033      19      65 ..      38      89 ..      19      92 .] 0.73

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.2e-06
   PF06252.7 19 akdltlaelkkvldelkekGf....k.krkrakkkskrpekasaaqlrkira 65
                  +lt+++lkk++ +lk+kG     + + k + k+s r+  ++ + ++kir 
  MMETSP0890-20130614|2321_1 38 INELTVSQLKKFILHLKKKGKiedsRlSYKDETKPSGRRDFKETELQAKIRT 89
                579*****************74433222333335555666678888888885 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.6e-06     0.012      10      43 ..      14      47 ..      10      62 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.6e-06
   PF13291.1 10 eveasdrkglLaditqviseekaniesvniesrk 43
                +v++ d++ +Lad+ ++  ++k+ni+++++++ k
  MMETSP0890-20130614|2321_1 14 RVVSADENKILADLETAFDQNKININELTVSQLK 47
                68999************************99965 PP

>> PF08216.6  Eukaryotic domain of unknown function (DUF1716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.8   5.2e-06     0.014       7      53 ..      26      70 ..      17      89 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-06
   PF08216.6  7 dllealeadeedevevldesslKklvlalekrlrkNqelRikfpddp 53
                dl+ a ++++  +++ l+ s+lKk++l+l+k+ +  ++ R+ ++d+ 
  MMETSP0890-20130614|2321_1 26 DLETAFDQNKI-NINELTVSQLKKFILHLKKKGK-IEDSRLSYKDET 70
                33333344333.3799*************99865.577899999875 PP

>> PF06542.6  Regulator protein PHA-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   1.6e-05     0.043      36      90 ..      20      74 ..       2      89 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
   PF06542.6 36 keeekesleiedcsviindrklteeklskffrfLkevakikvrkllledlkkvcl 90
                ++++ ++le    +  in ++lt+++l+kf+  Lk+++ki+  +l  +d+ k + 
  MMETSP0890-20130614|2321_1 20 ENKILADLETAFDQNKININELTVSQLKKFILHLKKKGKIEDSRLSYKDETKPSG 74
                334446777777777899999*************************999955444 PP

>> PF12836.2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.2e-05      0.14       3      31 ..      33      60 ..      32      68 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.2e-05
   PF12836.2  3 avgvdiNtAsaeeLqklsGlgpklAknIv 31
                +++++iN  ++++L+k+  l  k+  +I 
  MMETSP0890-20130614|2321_1 33 QNKININELTVSQLKKF-ILHLKKKGKIE 60
                689*************8.66666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       741  (0.0541984); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.89
# Mc/sec: 247.71
//
Query:       MMETSP0890-20130614|2328_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-17   60.9   3.1    2.3e-12   46.1   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
    0.00037   18.7   1.1       0.08   10.9   0.1    2.0  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.1e-06    0.0077      28      39 .]       2      13 ..       1      13 [. 0.96
   2 !   46.1   0.1   3.3e-16   2.3e-12       1      39 []      17      55 ..      17      55 .. 0.97

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-06
                EEETTSEEEEEE CS
  PF00400.27 28 sgSrDgtirlWd 39
                +++rD+t+r+Wd
  MMETSP0890-20130614|2328_1  2 TAGRDKTVRIWD 13
                89*********9 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 3.3e-16
                TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                g+ k+tl gHt+ V + +fs dg++++s+S+D+t r+Wd
  MMETSP0890-20130614|2328_1 17 GQIKRTLAGHTDEVKSSCFSADGNRIVSASDDKTARIWD 55
                5789**********************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   1.2e-05      0.08     238     264 ..       4      29 ..       1      38 [. 0.74
   2 !    8.8   0.1   5.3e-05      0.36     221     251 ..      30      59 ..      24      61 .] 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.2e-05
   PF11715.3 238 srDgkLRvWnletgqclrttdileaae 264
                  rD+++R+W++  gq+ rt +   ++e
  MMETSP0890-20130614|2328_1   4 GRDKTVRIWDTQSGQIKRTLAGH-TDE 29 
                 69**************8887776.333 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 5.3e-05
   PF11715.3 221 ldvsssevegqtfvftlsrDgkLRvWnletg 251
                 ++ s+   +g+ +v + s D++ R+W+++t+
  MMETSP0890-20130614|2328_1  30 VKSSCFSADGNRIV-SASDDKTARIWDTNTR 59 
                 56677778888888.*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.91
# Mc/sec: 160.63
//
Query:       MMETSP0890-20130614|2334_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-14   53.7   0.0    2.4e-14   53.6   0.0    1.0  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.7e-18   2.4e-14       1      45 [.      15      57 ..      15      61 .] 0.91

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.7e-18
  PF01728.14  1 yrsRsayKLleldekfkllkvgkgktvvDlgaaPGgwsqvllqrl 45
                +r+Rsa+KL eld++++llk+   k+vvDl+aaPG+w+q+++++ 
  MMETSP0890-20130614|2334_1 15 FRARSALKLRELDAEYSLLKD--VKRVVDLCAAPGSWCQFVREHS 57
                79***************9977..5****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 247.76
//
Query:       MMETSP0890-20130614|2326_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.5e-197  655.4   0.0   4.3e-197  655.1   0.0    1.0  1  PF01293.15 Phosphoenolpyruvate carboxykinase
  ------ inclusion threshold ------
      0.086   13.0   0.0        1.5    9.0   0.0    2.5  2  PF13238.1  AAA domain
       0.13   12.0   0.0       0.32   10.7   0.0    1.7  1  PF13671.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01293.15  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  655.1   0.0  9.5e-201  4.3e-197       4     462 ..      69     535 ..      66     539 .. 0.97

  Alignments for each domain:
  == domain 1    score: 655.1 bits;  conditional E-value: 9.5e-201
  PF01293.15   4 evlrnlslaeLveealkekegkltktgalvvetgkktgRspkdkfivkeestedkiwWgkvnkpiseekfdalkekvleylsek.elfvvdlfaGadeeyrlkvrvvtekawhalfvknllirp....teeeleefepdftvinapefkadperd.glnsetvviinleekivlilGteYagEmkksifsvmnyllpkkgvlsmhcsanvge.dgdvalfFGlsGTGKTTLsadperkLigdDehgwsdegvfnfeggcYaKtinLseekepeiynaikfgavleNvvvdeetrevdfddtsltentrvayplehienavepavaghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvagtEagvtepeatfsacfgapFlplhptvyAelLaekikkhgvkvyLvNtGwtggkygvGkriklketraiidailsg.slekaefetdpvfglevpkevpg 462
                  +++nl++a+L e +  ++    t++ga++v+tg +tgRspkdk++v+e+s++++iwWg+vnk++ e+ f++l+++v ++ls++ e+fv+d++aGad+++ +++rv+t kaw+a+f+kn++irp    ++ +le+f p+ft++na+++k+++ ++ g+nse++vi++l ++i++i+Gt YagEmkk+ifsvmny+ p +g+lsmhc+an g+  +dvalfFGlsGTGKTTLs+d +r LigdDeh w+d+g+ n+eggcYaKti+++++kep+iy+aik++a+leNv vd+ +r+vd++  ++ten+rv+ypl+h+e +ve++ aghp++iifLt+dafgvlPpv+kLt++qa+yhFlsGyt+k  gtE++++ p+atfsac+g++FlplhptvyA+lL +ki +h+v+++LvNtGw+gg+ygvGkr+++  tr+i+dai s+ +l++ +f+++pv++l+vp+ ++g
  MMETSP0890-20130614|2326_1  69 VIHYNLNYAALCERERLDDGLIPTAQGAVAVDTGIFTGRSPKDKYFVDESSSRHNIWWGEVNKAVPESIFNKLYQRVRDHLSSQaEVFVIDGYAGADPHTSMPLRVITAKAWQAHFCKNMFIRPedrgEKVTLESFAPEFTIYNASDLKNTEFEHdGMNSENFVIFHLGRRIAIIGGTAYAGEMKKGIFSVMNYTKPLEGILSMHCAANLGKeYNDVALFFGLSGTGKTTLSTDGKRLLIGDDEHLWDDHGIANIEGGCYAKTIDIDPKKEPDIYKAIKRNALLENVQVDPISRQVDYSSRKKTENSRVSYPLSHVERRVESGIAGHPSKIIFLTCDAFGVLPPVAKLTPDQAAYHFLSGYTSKAVGTERDIKTPTATFSACYGQAFLPLHPTVYAKLLTQKILRHNVQAFLVNTGWSGGQYGVGKRMDITLTRRIVDAIFSDhALSHDDFTHHPVLNLHVPNLLKG 535
                 589**************99*****************************************************************9***************************************4444455799***************9998877********************************************************557*********************************************************************************************************************************************************************************************************************************9762689999************98776 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00033       1.5       3      75 ..     288     374 ..     287     410 .. 0.59
   2 ?    1.3   0.0     0.079   3.6e+02      42      74 ..     545     585 ..     487     590 .] 0.63

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00033
   PF13238.1   3 itGtpGvGKtTlakeLaerl.......gdvlrdlakengleeevddkidtkeskeldedkldelldkleenes..........elaegen 75 
                 + G +G+GKtTl+   ++ l        d +   + e g++    d    +++ke d+ k  +    le+ +            +++ en
  MMETSP0890-20130614|2326_1 288 FFGLSGTGKTTLSTDGKRLLigddehlWDDHGIANIEGGCYAKTIDI---DPKKEPDIYKAIKRNALLENVQVdpisrqvdysSRKKTEN 374
                 679*********98886666777777777777777777777777777...6666666666444444444443355566666654444444 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.079
   PF13238.1  42 k.......idtkeskeldedkldelldkleenes.elaege 74 
                         +d++++++ +++     +++++++++ el++++
  MMETSP0890-20130614|2326_1 545 LlhpwqawNDRDQYERQVQGLASMFINNFKQYDAiELTQHG 585
                 24444444689999999999999999999999887666665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.1e-05      0.32       1      17 [.     285     301 ..     285     317 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.1e-05
   PF13671.1   1 lvllvGlpGsGKstlae 17 
                 + l+ Gl+G+GK+tl+ 
  MMETSP0890-20130614|2326_1 285 VALFFGLSGTGKTTLST 301
                 6799**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.86
# Mc/sec: 1644.01
//
Query:       MMETSP0890-20130614|2338_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       735  (0.0537595); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 384.68
//
Query:       MMETSP0890-20130614|2339_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-27   93.7   0.1    2.5e-12   45.9   0.0    3.2  3  PF13475.1  Domain of unknown function (DUF4116)
    0.00029   20.3   0.0        1.6    8.3   0.0    3.2  3  PF07892.6  Protein of unknown function (DUF1667)
  ------ inclusion threshold ------
      0.059   13.1   0.0       0.15   11.8   0.0    1.7  1  PF00400.27 WD domain, G-beta repeat
       0.13   12.0   1.5        1.7    8.4   0.1    2.6  2  PF14453.1  ThiS-like ubiquitin


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     4e-13   1.4e-09      14      49 .]      31      66 ..      24      66 .. 0.91
   2 !   45.9   0.0   7.2e-16   2.5e-12       1      42 [.      68     109 ..      68     114 .. 0.93
   3 !    7.2   0.0    0.0009       3.1      23      45 ..     115     138 ..     109     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 4e-13
   PF13475.1 14 salkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                 +l+++s+eLk+Dk+ivl Avk++g al++a +e++
  MMETSP0890-20130614|2339_1 31 LSLEFASDELKKDKDIVLSAVKRDGRALEFAANEMK 66
                589****************************99876 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 7.2e-16
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsals 42 
                 D +iv +av++ng+al+++s+eLknDk+ivl A++  g+al 
  MMETSP0890-20130614|2339_1  68 DHDIVIAAVTHNGMALQFASNELKNDKNIVLTALRETGYALV 109
                 669************************************994 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0009
   PF13475.1  23 LknDkeivlkAvk.qngsalsyas 45 
                 LknD  +v  A+k +n+++  ya 
  MMETSP0890-20130614|2339_1 115 LKNDPKVVETAIKnSNCYVVQYAG 138
                 8************66888988885 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0017       5.7       4      27 ..      33      56 ..      30      59 .. 0.87
   2 !    8.3   0.0   0.00048       1.6       2      31 ..      56      85 ..      55      87 .. 0.87
   3 !    4.2   0.0    0.0093        32       4      23 ..      83     102 ..      80     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
   PF07892.6  4 eeYakkeltnpkriltstVkvegg 27
                 e+a +el++ k+i+ s Vk +g 
  MMETSP0890-20130614|2339_1 33 LEFASDELKKDKDIVLSAVKRDGR 56
                69*****************97765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00048
   PF07892.6  2 rGeeYakkeltnpkriltstVkveggelpl 31
                r  e+a +e++n  +i+ + V  +g  l++
  MMETSP0890-20130614|2339_1 56 RALEFAANEMKNDHDIVIAAVTHNGMALQF 85
                788******************999877765 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0093
   PF07892.6   4 eeYakkeltnpkriltstVk 23 
                  ++a +el+n k i+ +  +
  MMETSP0890-20130614|2339_1  83 LQFASNELKNDKNIVLTALR 102
                 68*************99876 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.4e-05      0.15       3      21 ..      10      28 ..       8      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.4e-05
                EEEEEESSSSSEEEEEEES CS
  PF00400.27  3 ckatlrgHtspVtcvafsp 21
                + +tl+gH+  V++vaf+ 
  MMETSP0890-20130614|2339_1 10 QMQTLKGHSTYVWSVAFNK 28
                679**************86 PP

>> PF14453.1  ThiS-like ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.054   1.8e+02      15      32 ..      30      47 ..      27      50 .. 0.86
   2 ?    8.4   0.1   0.00048       1.7      16      51 ..      56      96 ..      48     100 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.054
   PF14453.1 15 dtslfelknkskpeaDVv 32
                 +sl++  ++ k++ D+v
  MMETSP0890-20130614|2339_1 30 XLSLEFASDELKKDKDIV 47
                57899999********98 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00048
   PF14453.1 16 tslfelknkskpeaDVvil....NGFpik.edikLkegDri 51
                  l++ +n++k++ D+vi     NG++++    +Lk++ +i
  MMETSP0890-20130614|2339_1 56 RALEFAANEMKNDHDIVIAavthNGMALQfASNELKNDKNI 96
                4678889**********954444888876333455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 637.01
//
Query:       MMETSP0890-20130614|2333_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 999.96
//
Query:       MMETSP0890-20130614|2344_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-08   33.1   0.6    0.00025   20.6   0.0    2.4  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.038   13.8   0.1      0.043   13.6   0.1    1.1  1  PF02872.13 5'-nucleotidase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   5.2e-05      0.35      22      40 ..       2      20 ..       1      21 [. 0.83
   2 !   20.6   0.0   3.7e-08   0.00025       1      30 [.      22      51 ..      22      53 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
                C-SSHHHHHHHHHHHHHHH CS
  PF00514.18 22 ksgdeevqeeAawALsNLa 40
                +sg    +e+Aa AL+NLa
  MMETSP0890-20130614|2344_1  2 SSGTATAKENAAVALHNLA 20
                56667789**********8 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.7e-08
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqe 30
                ++ nk a+ +aGa++pL+ L +sg++  +e
  MMETSP0890-20130614|2344_1 22 NDNNKIAIANAGAIRPLITLANSGNTTSKE 51
                689********************9987665 PP

>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   6.2e-06     0.043      36      72 ..      24      65 ..       3      71 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.2e-06
  PF02872.13 36 gadialangggira..d...aGeitrgdvlailpfgntlvvv 72
                + +ia+an+g ir   +   +G+ t +++l+il  +n++ ++
  MMETSP0890-20130614|2344_1 24 NNKIAIANAGAIRPliTlanSGNTTSKEALKILARNNNVKTM 65
                4479********99653789*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:01.09
# Mc/sec: 178.08
//
Query:       MMETSP0890-20130614|2336_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 1096.92
//
Query:       MMETSP0890-20130614|2348_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-14   52.2   1.3    5.3e-11   41.9   0.2    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.9e-12   46.7   0.0      2e-12   46.7   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    3.9e-07   29.2   0.8    4.5e-07   29.0   0.5    1.1  1  PF00515.23 Tetratricopeptide repeat
    3.7e-06   26.1   0.1      5e-06   25.7   0.1    1.2  1  PF13176.1  Tetratricopeptide repeat
    4.9e-06   25.9   0.7    5.7e-06   25.7   0.5    1.1  1  PF07719.12 Tetratricopeptide repeat
    4.6e-05   22.8   0.1    5.6e-05   22.5   0.0    1.2  1  PF13414.1  TPR repeat
     0.0025   17.3   0.2     0.0035   16.8   0.2    1.2  1  PF13181.1  Tetratricopeptide repeat
     0.0035   17.2   0.3      0.097   12.8   0.0    2.1  2  PF13431.1  Tetratricopeptide repeat
     0.0075   16.7   0.1      0.012   16.0   0.1    1.3  1  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.017   15.6   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
      0.018   14.9   0.0      0.021   14.7   0.0    1.1  1  PF12688.2  Tetratrico peptide repeat
      0.067   12.9   0.1      0.074   12.8   0.1    1.2  1  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00056      0.64      30      41 ..       3      14 ..       2      15 .. 0.91
   2 !   41.9   0.2   4.6e-14   5.3e-11       1      34 [.      16      49 ..      16      50 .. 0.97

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00056
   PF13374.1 30 airrrllGddHP 41
                +i ++++G++HP
  MMETSP0890-20130614|2348_1  3 EILEKVHGPNHP 14
                789********9 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 4.6e-14
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +aa+lnnLA +l ++g+y+eA +l+e+al i+++
  MMETSP0890-20130614|2348_1 16 VAATLNNLAGLLDNQGKYNEAKPLYERALRIHEE 49
                8******************************985 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.8e-15     2e-12      33      77 ..       3      48 ..       1      49 [. 0.93

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.8e-15
   PF13424.1 33 el.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                e+  +++g++hp +a +lnnla l+  +g+y eA++++e+Al+i e
  MMETSP0890-20130614|2348_1  3 EIlEKVHGPNHPIVAATLNNLAGLLDNQGKYNEAKPLYERALRIHE 48
                6757889************************************987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.5     4e-10   4.5e-07       1      32 [.      17      48 ..      17      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 4e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a +l+nl+ ++ ++gky+eA   ye+AL++ +
  MMETSP0890-20130614|2348_1 17 AATLNNLAGLLDNQGKYNEAKPLYERALRIHE 48
                679*************************9976 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   4.4e-09     5e-06       1      31 [.      19      49 ..      19      51 .] 0.92

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.4e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                +l+nLa l  ++g+y +A  lyeraL+++++
  MMETSP0890-20130614|2348_1 19 TLNNLAGLLDNQGKYNEAKPLYERALRIHEE 49
                79**********************9988865 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.5     5e-09   5.7e-06       1      31 [.      17      47 ..      17      50 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 5e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a  l+nl+ ++ ++g+y+eA+ ++e+Al++ 
  MMETSP0890-20130614|2348_1 17 AATLNNLAGLLDNQGKYNEAKPLYERALRIH 47
                5789************************986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.9e-08   5.6e-05       3      33 ..      17      47 ..      10      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 4.9e-08
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld 33
                A +l++l+  l ++g+y eA  +ye+Al++ 
  MMETSP0890-20130614|2348_1 17 AATLNNLAGLLDNQGKYNEAKPLYERALRIH 47
                8899999999999999999999999999986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   3.1e-06    0.0035       2      30 ..      18      46 ..      17      50 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.1e-06
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                ++++nl+ ++ + G+y +Ak  +e+al +
  MMETSP0890-20130614|2348_1 18 ATLNNLAGLLDNQGKYNEAKPLYERALRI 46
                6899***********************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.5e-05     0.097      13      33 ..      17      37 ..       5      38 .. 0.85
   2 ?    3.0   0.0      0.11   1.3e+02       1      10 [.      39      48 ..      39      50 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.5e-05
   PF13431.1 13 adaynnLAelllnnGdleeAe 33
                a  +nnLA ll n+G++ eA+
  MMETSP0890-20130614|2348_1 17 AATLNNLAGLLDNQGKYNEAK 37
                7899***************96 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.11
   PF13431.1  1 lyekaleldP 10
                lye+al+++ 
  MMETSP0890-20130614|2348_1 39 LYERALRIHE 48
                7*****9986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05     0.012       2      32 ..      18      48 ..      16      50 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-05
   PF13428.1  2 eallalarallalGdpdeAiallrralalaP 32
                ++l  la +l ++G + eA  l++ral+ + 
  MMETSP0890-20130614|2348_1 18 ATLNNLAGLLDNQGKYNEAKPLYERALRIHE 48
                67789**********************9875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   1.5e-05     0.017       3      25 ..      23      45 ..       6      50 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.5e-05
   PF13432.1  3 lArallraGdydeAlaaleaala 25
                lA +l ++G+y eA +++e+al+
  MMETSP0890-20130614|2348_1 23 LAGLLDNQGKYNEAKPLYERALR 45
                78888999999999999999998 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.9e-05     0.021       5      28 ..      21      44 ..      17      47 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.9e-05
   PF12688.2  5 feragarDstGeeakAvplYrrAl 28
                 + ag  D  G+ ++A plY+rAl
  MMETSP0890-20130614|2348_1 21 NNLAGLLDNQGKYNEAKPLYERAL 44
                5679*******************9 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.5e-05     0.074      15      34 ..      27      46 ..      17      49 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.5e-05
                HHHTT-HHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlel 34
                 D++gky+eA  lY+ Al +
  MMETSP0890-20130614|2348_1 27 LDNQGKYNEAKPLYERALRI 46
                79***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.86
# Mc/sec: 142.11
//
Query:       MMETSP0890-20130614|2354_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.2   0.1    2.6e-10   39.6   0.0    1.3  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.082   11.0   0.0      0.088   10.9   0.0    1.0  1  PF02239.11 Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   3.7e-14   2.6e-10       2      32 ..      23      53 ..      22      54 .] 0.96

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3.7e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETT CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrD 32
                +++++l+gHt++++c++fs dg++++++S+D
  MMETSP0890-20130614|2354_1 23 KLLHILEGHTGFINCCKFSKDGRRVVTASDD 53
                789***************************9 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.3e-05     0.088      10      57 ..       6      53 ..       3      54 .] 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.3e-05
                EEBTT---EEEE-----SEEEEE-------EEEE---.--EEEEE--- CS
  PF02239.11 10 vverdagkvalidgdskeilavlesgyalHisrvfasdgRyvyvigRD 57
                +v ++ gk  + d ++++ l++le++       +f++dgR v +++ D
  MMETSP0890-20130614|2354_1  6 IVVAAGGKAFIFDTETNKLLHILEGHTGFINCCKFSKDGRRVVTASDD 53
                78889999********************************99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.85
# Mc/sec: 152.24
//
Query:       MMETSP0890-20130614|2359_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-15   57.4   0.0    2.5e-15   56.4   0.0    1.5  1  PF13489.1  Methyltransferase domain
    1.1e-14   54.8   0.1    2.1e-14   53.9   0.0    1.5  1  PF12847.2  Methyltransferase domain
    1.3e-14   54.0   0.0    1.8e-13   50.3   0.0    2.2  1  PF03781.11 Formylglycine-generating sulfatase enzyme
    3.5e-12   46.0   0.0    2.7e-06   26.9   0.0    2.2  2  PF13847.1  Methyltransferase domain
    1.9e-11   44.1   0.1    5.8e-10   39.4   0.0    2.9  2  PF08242.7  Methyltransferase domain
    2.6e-10   40.6   1.2    4.4e-10   39.8   0.3    1.8  2  PF12867.2  DinB superfamily
    9.9e-09   35.4   0.0    9.3e-08   32.3   0.0    2.5  2  PF08241.7  Methyltransferase domain
    1.2e-06   28.7   0.0    3.9e-06   27.0   0.0    1.9  1  PF13649.1  Methyltransferase domain
     0.0018   16.9   0.0      0.003   16.1   0.0    1.2  1  PF08003.6  Protein of unknown function (DUF1698)
     0.0063   16.4   0.1      0.014   15.3   0.1    1.6  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.096   11.6   0.0       0.17   10.8   0.0    1.3  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
       0.11   11.7   0.0       0.21   10.8   0.0    1.3  1  PF05175.9  Methyltransferase small domain
       0.16   11.8   0.0       0.29   11.0   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase
       0.16   10.6   0.0       0.39    9.4   0.0    1.6  2  PF05219.7  DREV methyltransferase


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   2.6e-18   2.5e-15       7     159 ..     549     729 ..     545     731 .. 0.80

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 2.6e-18
   PF13489.1   7 reladllerllar.lkpggrvLDiGcGtGillellaengf.dvtgvDpspaaigk..............................akqaqksqfdeedaae......pagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthisffsaeslkelleeaGfei 159
                 +++a+ l +l++    ++++ LD+Gc  G  +  la++gf +v+g+D s++ i++                              ++++ ++++d+ d+ +      +a+kfd iv+ ++l+ +pdp+++++++ ++ +p+ ++l++ p +          w  + ++ t  ++  +++++e +   Gfe+
  MMETSP0890-20130614|2359_1 549 KRCAKVLTNLFPSdSLKDKNALDVGCAVGGTSFALADAGFaKVVGIDFSEQFINIanklaagdpvsyrrsgiagntspvtlklrqRDTVSFDVADACDKSKllavahSAHKFDAIVCANLLCRLPDPRAFVDSLPDITNPEAVILFVSPYS----------WFTEYTPDTSKWYRGPSDIEEHMSNLGFEL 729
                 567888888998855899**********************89**************************************995554444444443333222444444888***************************************74..........333444424445558888888888888887 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   2.1e-17   2.1e-14       1     111 [.     565     696 ..     565     697 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 2.1e-17
   PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarena....................ksldleeriellqgdakeelsller.......fDavllkgltldallal.deprrvlealpkllkpggrlvies 111
                 k+k+ lD+Gc +G  s++la+ ++ akvvg+D+se+++++a++ a                     +l++++ +++  +da  ++s l +       fDa+++ +     ll++ ++pr+++++lp+  +p+ ++++ s
  MMETSP0890-20130614|2359_1 565 KDKNALDVGCAVGGTSFALAD-AGFAKVVGIDFSEQFINIANKLAagdpvsyrrsgiagntspvtLKLRQRDTVSFDVADA-CDKSKLLAvahsahkFDAIVCAN-----LLCRlPDPRAFVDSLPDITNPEAVILFVS 696
                 57889****************.69999***************888888888888888666666665666667777777777.333333336899***********.....99999****************99987655 PP

>> PF03781.11  Formylglycine-generating sulfatase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.8e-16   1.8e-13      20     259 ..     223     465 ..     207     466 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.8e-16
                 --TT----S-EEEB---EEE-SS--BHHHHHHHHHH-----H................---TTEEEE---BTTB---B-------TTSB--...S--HHHHHHHHHH---.........B---HHHHHHHH--------S-----S----------TTT-B-----...--S.---TT-S-B-----B-------EEEEEE--...THHHH-.-SBS---------EEEE---TT--T..T--TTSTT--.EEE-TT----------E CS
  PF03781.11  20 ktandeeapahevtvraFaidkteVTnaqyaafveatgyete................aasqwwaeveganvrhpegrksdikkradhPvv...hVsweDavaYArwlgkktg...egyrLPteaEweyAArggkkgreypwgdelkpakniwqGslakfekeaaaadsqngrtspvgsfppnalGlyDmaGNvwEWtsdwyk...kyalap.aeelsqeaekgelrvvkGgswlkae..lssllraafrasaetpdtaasdvGfRlv 259
                 +  +d+e+  +e++v+aF+ + t +Tn+q+ +fv++ gy  +                +++++w +   + + +  g +   ++ + +P++    V+  +a+a+++wl   +     +y L tea+         k+    + d+++pa     Gs ++ ++   + + + g++        +a++   ++GNvw W+ d ++   ++a++p +++ s++ ++g++ ++ Ggs++++   +s ++r +fr        ++++ GfR+ 
  MMETSP0890-20130614|2359_1 223 TFGWDNEYGHREINVNAFESSATLITNGQFLDFVKDGGYARSelwtqdgwgwrsfrnrKWPHFWLPRGPSGLHEY-GLRLPFEELDSLPMQlpaEVNAHEARAFCKWLQLSNSsdgWRYGLCTEAQHG-----VLKKHDISYDDSKNPA---LYGS-EDLRSMSLNLNLAYGSP--------SAVDS-TFMGNVWHWCEDDFSalpGFAPEPlYDDFSTPCFDGQHSLILGGSFVSTGdeASAFARFHFR------PHFHQHAGFRVT 465
                 56799***********************************999************99999999999777666555.6789999******964448************854322222566677777654.....3567777777777774...2342.22233333333333333........33333.478************99988888889999******************986566667777777......346899999985 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.8e-09   2.7e-06       3      49 ..     565     609 ..     563     620 .. 0.90
   2 !   16.8   0.0   3.4e-06    0.0033      55     115 ..     636     699 ..     627     741 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.8e-09
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraq 49 
                 ++++ lD+GC+ G  +++la  +g  akvvGiD+se+ i+ A+++a+
  MMETSP0890-20130614|2359_1 565 KDKNALDVGCAVGGTSFALA-DAGF-AKVVGIDFSEQFINIANKLAA 609
                 67899***************.5555.99***************9885 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 3.4e-06
   PF13847.1  55 nveFiqgdieeleklle.....esfDlvisnevlnaladpqkvlkeiervlkpggrlivespslla 115
                  v+F ++d+ + +kll+     ++fD +++ ++l++l+dp +++ ++ +  +p+ +++ +sp   +
  MMETSP0890-20130614|2359_1 636 TVSFDVADACDKSKLLAvahsaHKFDAIVCANLLCRLPDPRAFVDSLPDITNPEAVILFVSPY--S 699
                 6899999999955443345999**************************************999..3 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.1   1.1e+03      64      85 ..     378     407 ..     342     412 .. 0.72
   2 !   39.4   0.0   5.9e-13   5.8e-10       1      98 [.     570     691 ..     570     692 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 1.1
   PF08242.7  64 g........ssfDvvvasnvlhhlkdirev 85 
                 +        s++D  ++ nv h+++d  ++
  MMETSP0890-20130614|2359_1 378 NlnlaygspSAVDSTFMGNVWHWCEDDFSA 407
                 04455556689************9876555 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 5.9e-13
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg..........................ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 L++Gc +G +++al+++   ++++g+D+s+++i + ++kla+ ++ +  +  +  +    + +                           ++fD++v++n+l  l+d+r+++d++ +  +p++v
  MMETSP0890-20130614|2359_1 570 LDVGCAVGGTSFALADA-GFAKVVGIDFSEQFI-NIANKLAAGDPVSYRRSGIAGNTSPVTLKLrqrdtvsfdvadacdkskllavahsaHKFDAIVCANLLCRLPDPRAFVDSLPDITNPEAV 691
                 8****************.9**************.888888888877777776665554433333799999*******************************************99888888765 PP

>> PF12867.2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.3   4.5e-13   4.4e-10       2     126 ..      23     165 ..      22     166 .. 0.76
   2 ?   -2.8   0.0       6.8   6.7e+03      44      84 ..     284     330 ..     279     336 .. 0.74

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 4.5e-13
   PF12867.2   2 lerararllalleglteeelnrqp..spgkwsiawllaHlad..teelwlerlr............geeap............rpayddltdpslaealaylaevrarllellealtdadleapitappglgkltlgdlllfvlqHeqhHleq 126
                 +e +++ ++ l+++l ee +++    ++++++++ ++aH a+  +++l ++ lr            +                 +   ++++p+l+e+ ay+a+vr+ +l+++++ ++  le+  + p     l+++++++++++He+ Hle+
  MMETSP0890-20130614|2359_1  23 FENTWTLTEVLFSSLREERAFYTLptHGLRHPLIFYYAHPAAlaVNKLRVAGLRdvpvnsyyeqifE---TgvdemswddvvdGEVAASRAWPTLDEVTAYRASVRQLMLDIIRSHPA--LENAEPSP-----LSARWCVALICEHERIHLET 165
                 899************997777764226999**********997777788888885555555544441...0444334444443244455566***********************988..55555555.....9*****************98 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.8
   PF12867.2  44 elwlerlr......geeaprpayddltdpslaealaylaevrarlle 84 
                 ++wl+r        g + p++++d+l ++ +ae+ a  a  + ++l+
  MMETSP0890-20130614|2359_1 284 HFWLPRGPsglheyGLRLPFEELDSLPMQLPAEVNAHEARAFCKWLQ 330
                 57777777777777778889999999999999988876666666665 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.7   2.6e+03      59      77 ..     387     405 ..     372     409 .. 0.82
   2 !   32.3   0.0   9.5e-11   9.3e-08       1      93 [.     570     692 ..     570     694 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.7
   PF08241.7  59 nsfDvvvssevlehledpe 77 
                 + +D  ++ +v +++ed  
  MMETSP0890-20130614|2359_1 387 SAVDSTFMGNVWHWCEDDF 405
                 578999*********8754 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 9.5e-11
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle........................lvvadaeel......pfednsfDvvvssevlehledpekalkeiaRvLkpgGll 93 
                 LdvGc  g  + ala++ +a+v+g+D+se++++ a++ ++ + ++                        + vada++            +fD++v+ ++l+ l+dp+++++ +  ++ p+ ++
  MMETSP0890-20130614|2359_1 570 LDVGCAVGGTSFALADAGFAKVVGIDFSEQFINIANKLAAGDPVSyrrsgiagntspvtlklrqrdtvsFDVADACDKskllavAHSAHKFDAIVCANLLCRLPDPRAFVDSLPDITNPEAVI 692
                 8*****************************************************************99977777444322232255677********************99988877777665 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     4e-09   3.9e-06       1      84 [.     569     675 ..     569     689 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4e-09
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelak........................erlsskgl....kvkfvqada......ralpfeegefdlvvcaglslehlspk 84 
                 +ld+GC  G + +al++a   g  ++v+g+D+se+ ++ a+                        +      l    +v+f +ada       a+  ++++fd++vca+l l++l ++
  MMETSP0890-20130614|2359_1 569 ALDVGCAVGGTSFALADA---GF-AKVVGIDFSEQFINIANklaagdpvsyrrsgiagntspvtlK------LrqrdTVSFDVADAcdksklLAVAHSAHKFDAIVCANL-LCRLPDP 675
                 59*************977...67.****************98888888877777777655555431......1444489998888866543333457888*******999.9987765 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.1e-06     0.003     113     152 ..     563     602 ..     550     610 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.1e-06
   PF08003.6 113 dlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfli 152
                  lk++  ldvGc+ G   + ++ +g + vvGid se+f+ 
  MMETSP0890-20130614|2359_1 563 SLKDKNALDVGCAVGGTSFALADAGFAKVVGIDFSEQFIN 602
                 59***********************************975 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.4e-05     0.014       4     115 ..     569     696 ..     566     698 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-05
   PF13659.1   4 vldpgcGsGtfllaalellaalllgvEldpraaalaarnlaragl....................aervrvrqgdlrdlaell....ragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvliv 115
                  ld+gc  G + +a+++++ a+++g++ +++ +++a++ +a  ++                     ++v + ++d+ d ++ll    +a +fd++v+    + r +++       +af++ +++   p +v+++++
  MMETSP0890-20130614|2359_1 569 ALDVGCAVGGTSFALADAGFAKVVGIDFSEQFINIANKLAAGDPVsyrrsgiagntspvtlklrqRDTVSFDVADACDKSKLLavahSAHKFDAIVCANLLC-RLPDP-------RAFVDSLPDITNPEAVILFVS 696
                 69*****************9*****************88877666677777777777666666664556666666655443332222568899999988888.44444.......567777777777777777665 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.17     159     202 ..     563     606 ..     549     636 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00018
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvake 202
                   ++++ lDvG+  G  + a a  g +kvv++D  e+ +++a++
  MMETSP0890-20130614|2359_1 563 SLKDKNALDVGCAVGGTSFALADAGFAKVVGIDFSEQFINIANK 606
                 4578899*********************************9986 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022      0.21      20      75 ..     552     608 ..     548     620 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00022
                 -HHHHHHS-TT..------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHH CS
   PF05175.9  20 selLletlpkk..lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanl 75 
                 +++L + +p++  +++++lD+Gc +G  + ala+++   +v+ +D +++ +++a++ +
  MMETSP0890-20130614|2359_1 552 AKVLTNLFPSDslKDKNALDVGCAVGGTSFALADAGFA-KVVGIDFSEQFINIANKLA 608
                 68899999999988999****************98877.899*****99999998765 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00029      0.29      23      79 ..     565     630 ..     538     679 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00029
  PF01728.14  23 kgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttl.qgdi...........tdpstqe 79 
                 k+k+++D+g+a Gg s  l++ +   +kvv++D  +   ++ +++l  gd+           t+p t +
  MMETSP0890-20130614|2359_1 565 KDKNALDVGCAVGGTSFALADAG--FAKVVGIDFSEQ-FINIANKLaAGDPvsyrrsgiagnTSPVTLK 630
                 569********************..89*******976.6777777766676444444444443333333 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.8   2.8e+03      91     129 ..     562     601 ..     553     607 .. 0.68
   2 ?    9.4   0.0    0.0004      0.39     146     202 ..     654     710 ..     639     728 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.8
   PF05219.7  91 sdqedkklldlGaGdGeitkrvapt.feevyatelsetmr 129
                    +dk+ ld+G   G  +  +a+  f +v   + se+ +
  MMETSP0890-20130614|2359_1 562 DSLKDKNALDVGCAVGGTSFALADAgFAKVVGIDFSEQFI 601
                 4478888999998888887777653366777666666665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0004
   PF05219.7 146 qetdvkldlilclnlldrcfdplklledirsalepngrvivalvlPvshyvetnt..gk 202
                 +++  k+d i+c nll r  dp  +++ +  + +p  ++++ +v P+s + e  +   k
  MMETSP0890-20130614|2359_1 654 AHSAHKFDAIVCANLLCRLPDPRAFVDSLPDITNP--EAVILFVSPYSWFTEYTPdtSK 710
                 556789**********************9998877..578889********99883334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:01.49
# Mc/sec: 1225.52
//
Query:       MMETSP0890-20130614|2369_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-09   36.3   0.0    9.5e-09   35.1   0.0    1.6  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    1.6e-08   34.3   0.0    2.8e-08   33.4   0.0    1.5  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    3.1e-07   30.3   0.0    5.8e-07   29.5   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    2.8e-05   23.7   0.0    4.6e-05   23.1   0.0    1.5  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.057   13.3   0.0       0.11   12.3   0.0    1.4  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.5e-12   9.5e-09       2      75 ..      19      88 ..      18      88 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 3.5e-12
                EEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT..S-SSEEEET.TTEEEESHHHHHHHHH CS
  PF02798.15  2 tltlfnhrgraeslrillaekgveyeivrvdfeagegkspewlklnpki..grvPaledg.dglklteSlAIarYla 75
                +l++f++ g+ e++r++++ +g+++e v+v+        +ew  l++k   g++P+l  g ++  + +S A+++Y a
  MMETSP0890-20130614|2369_1 19 SLYYFPIEGAGEKVRLAFVLSGIDFENVKVTS-------DEWSTLKKKTryGQLPMLRVGaNSEEMYQSDAMMKYAA 88
                59*****************************9.......999888888888************************76 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     1e-11   2.8e-08      30      95 .]     159     230 ..     127     230 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1e-11
                 HHHHHHHHHHHHHHHH..TSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT....HTT-HHHHHHHHHHHHSH CS
  PF00043.20  30 krkvlevlealeeels..gkkylvGdkltlADialfpalewlqrldgnfl....eeefPklkawlkriaarp 95 
                 + ++ +++ +++  l+   + +l+G+k+t+AD+ ++p++ ++ r   +f      +++P+++a+ +r++a p
  MMETSP0890-20130614|2369_1 159 ENDLPRFMNYFTQALNasSNSFLCGSKPTIADCKALPLFRYYTRGIAEFIpkdcLSSYPAITAYIDRMLAIP 230
                 5677888888888888889*********************887777666667777*************9976 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.1e-10   5.8e-07       1      67 [.      20      87 ..      20      91 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 2.1e-10
                EE--TTSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE--..--EEESHHHHHHHH CS
   PF13417.1  1 LygspfSpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLedd..gevltdSlvIieyL 67
                Ly++p     +kvrla  ++g+++e v+vt ++  + l++++++g++P+L+ +   e +++S ++++y+
  MMETSP0890-20130614|2369_1 20 LYYFPIEGAGEKVRLAFVLSGIDFENVKVTSDE-WSTLKKKTRYGQLPMLRVGanSEEMYQSDAMMKYA 87
                89999999*********************8888.799*************9886577***********7 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.7e-08   4.6e-05      24      69 .]     175     225 ..     108     225 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
                 -SS...-------HHHHHHHHHHHHH.HHHH---...---TT----HHHHHH CS
   PF13410.1  24 dgp..fllGdrpslaDialapflvrl.daagpgl...direayPnlrawler 69 
                 +++  fl+G++p++aD+ + p +++  + +   +   d +++yP + a+++r
  MMETSP0890-20130614|2369_1 175 ASSnsFLCGSKPTIADCKALPLFRYYtRGIAE-FipkDCLSSYPAITAYIDR 225
                 33345****************98876344432.2355888**********98 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-05      0.11       7      66 ..      31      86 ..      29      90 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.2e-05
                HHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.-.---EEESHHHHHHH CS
   PF13409.1  7 RvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdk.dgtvineSseIlry 66
                +v++a+ l g+++e + v++  + ++   +l++ + +g++P+L +  +++  + S ++++y
  MMETSP0890-20130614|2369_1 31 KVRLAFVLSGIDFENVKVTS--DEWS---TLKKKTRYGQLPMLRVGaNSEEMYQSDAMMKY 86
                89************999966..5564...6999**********997555588888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:01.04
# Mc/sec: 553.01
//
Query:       MMETSP0890-20130614|2371_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   20.5   0.0    0.00027   20.5   0.0    1.2  1  PF04049.8 Anaphase promoting complex subunit 8 / Cdc23


Domain annotation for each model (and alignments):
>> PF04049.8  Anaphase promoting complex subunit 8 / Cdc23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     2e-08   0.00027      13      47 ..       1      35 [.       1      92 [. 0.78

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2e-08
   PF04049.8 13 LrkaivelserkLyqsaKWaaEllngleeedseds 47
                Lr ai  l++++L qs+ ++aE+l gl+++d + +
  MMETSP0890-20130614|2371_1  1 LRRAIAVLRQHCLKQSSAFCAEQLVGLTKDDVSIN 35
                7899************************6665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.99
# Mc/sec: 266.26
//
Query:       MMETSP0890-20130614|2379_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.6   1.9         27    4.3   0.8    3.3  2  PF09339.5 IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF09339.5  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0024        32      20      31 ..       6      17 ..       3      18 .. 0.88
   2 ?    4.3   0.8    0.0019        27      19      31 ..      35      47 ..      19      62 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0024
                -HHHHHCCCTS- CS
   PF09339.5 20 slselArrtglp 31
                +l+el + tg p
  MMETSP0890-20130614|2379_1  6 KLTELMELTGTP 17
                8*********98 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0019
                B-HHHHHCCCTS- CS
   PF09339.5 19 lslselArrtglp 31
                ++l+el + t l+
  MMETSP0890-20130614|2379_1 35 MKLTELMELTELT 47
                5666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 291.73
//
Query:       MMETSP0890-20130614|2380_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-27   95.1   0.0    3.5e-27   94.5   0.0    1.2  1  PF13306.1 Leucine rich repeats (6 copies)
    2.2e-11   43.2   0.2    2.2e-05   24.0   0.1    2.4  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   5.1e-31   3.5e-27       7      97 ..      20     110 ..      17     112 .] 0.93

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 5.1e-31
   PF13306.1   7 aFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigs 97 
                 +F++c+ l ++t+p  +t+Ig +aF++c+sl+++tlp  lt+ig  aF+nc+slt++t+p  lt+i+++aF  c+sl+++++p  lt+ig+
  MMETSP0890-20130614|2380_1  20 VFSGCTRLIQLTLPAGLTRIGRNAFRRCTSLTQLTLPVALTTIGFGAFDNCTSLTQLTLPAGLTTIEDKAFHLCTSLTQLTLPAGLTEIGE 110
                 7999999999999999999999999999999999999999999999999999999999999999999999999999999999999999997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.7e-07    0.0032      19      56 ..      19      55 ..      15      57 .. 0.95
   2 !   24.0   0.1   3.2e-09   2.2e-05      13      56 ..      59     101 ..      57     103 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.7e-07
   PF13855.1 19 gaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                g+F+g+++L  L L    l++i ++af  ++sL++L L
  MMETSP0890-20130614|2380_1 19 GVFSGCTRLIQLTLP-AGLTRIGRNAFRRCTSLTQLTL 55
                68*************.********************98 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 3.2e-09
   PF13855.1  13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56 
                 l++i+ gaF ++++L+ L L    l++i+++af+ ++sL++L L
  MMETSP0890-20130614|2380_1  59 LTTIGFGAFDNCTSLTQLTLP-AGLTTIEDKAFHLCTSLTQLTL 101
                 889999***************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.78
# Mc/sec: 344.09
//
Query:       MMETSP0890-20130614|2382_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      126  (0.00921592); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 132.21
//
Query:       MMETSP0890-20130614|2383_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 204.28
//
Query:       MMETSP0890-20130614|2386_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-21   76.0   6.8    9.8e-12   45.0   0.4    3.0  3  PF08238.7  Sel1 repeat
     0.0035   17.0   0.0     0.0047   16.5   0.0    1.2  1  PF11480.3  Colicin-E5 Imm protein
     0.0059   16.3   1.4      0.014   15.1   0.7    1.9  2  PF13424.1  Tetratricopeptide repeat
      0.007   15.8   3.2      0.077   12.5   0.7    2.2  2  PF13414.1  TPR repeat
     0.0073   16.7   2.7       0.46   11.1   0.3    2.3  2  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.031   14.1   1.9        1.8    8.4   0.1    2.1  2  PF13559.1  Domain of unknown function (DUF4129)
      0.046   13.2   6.4         13    5.4   0.3    3.9  4  PF00515.23 Tetratricopeptide repeat
      0.054   13.2   0.3          1    9.1   0.0    2.2  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.059   13.4   0.1       0.21   11.6   0.1    1.7  2  PF11193.3  Protein of unknown function (DUF2812)
      0.077   12.7   2.9         12    5.8   0.2    3.1  2  PF13176.1  Tetratricopeptide repeat
       0.13   11.6   0.0         14    5.0   0.0    2.0  2  PF07400.6  Interleukin 11
        3.1    7.8   5.8         27    4.8   0.1    3.3  4  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   3.3e-09   3.7e-06      15      38 ..       2      24 ..       1      25 [. 0.93
   2 !   45.0   0.4   8.6e-15   9.8e-12       1      39 []      26      61 ..      26      61 .. 0.92
   3 !    6.9   0.0    0.0081       9.2       1      20 [.      62      78 ..      62      79 .] 0.85

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 3.3e-09
   PF08238.7 15 nGlgGvpkdpekAleWyekAAeqG 38
                +G  Gv++ +e A+eWy++AA+qG
  MMETSP0890-20130614|2386_1  2 KGC-GVERSYETAVEWYRRAADQG 24
                798.8******************9 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 8.6e-15
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                a Aq+nLG   +y++G+ G+++ ++ A+eW+++AA+qG+
  MMETSP0890-20130614|2386_1 26 AVAQCNLG--NFYYHGY-GIEQSYDTAVEWLRRAADQGN 61
                67******..5558**9.9*******************8 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0081
   PF08238.7  1 aeAqynLGlyymylnGlgGv 20
                a+A   LG  ++y nG  Gv
  MMETSP0890-20130614|2386_1 62 ARAEASLG--ECYSNGH-GV 78
                578889**..999***8.78 PP

>> PF11480.3  Colicin-E5 Imm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.2e-06    0.0047       4      76 ..       9      78 ..       7      79 .] 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.2e-06
   PF11480.3  4 stkAaievceeAakkgLviskieGgiWlkpgFearldaiwdGldkpvdvdeinknNtrAienikddaskgyda 76
                s + a+e   +Aa++gL++++ + g ++  g+ ++   ++d +++     ++++ N rA  ++ +  s+g+ +
  MMETSP0890-20130614|2386_1  9 SYETAVEWYRRAADQGLAVAQCNLGNFYYHGYGIEQ--SYDTAVEWLR-RAADQGNARAEASLGECYSNGHGV 78
                567899*****************9999999887654..5664444433.788999999999999999999965 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7   1.2e-05     0.014      27      74 ..       9      58 ..       7      62 .. 0.82
   2 !    9.7   0.3   0.00061       0.7      45      74 ..      25      58 ..      22      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-05
   PF13424.1 27 lyekalellrelgddhpdtaralnnlanlylalg....dydeAleylekAle 74
                 ye+a+e +r++ d    +a+a  nl+n y++       yd A+e+l++A +
  MMETSP0890-20130614|2386_1  9 SYETAVEWYRRAAD--QGLAVAQCNLGNFYYHGYgieqSYDTAVEWLRRAAD 58
                58888888777754..457*************6659888***********87 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00061
   PF13424.1 45 taralnnlanlylalg....dydeAleylekAle 74
                +a+a  nl+n y++       yd A+e+l++A +
  MMETSP0890-20130614|2386_1 25 LAVAQCNLGNFYYHGYgieqSYDTAVEWLRRAAD 58
                6889999999999955587789999999999977 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.049        55      17      30 ..       8      21 ..       6      23 .. 0.83
   2 !   12.5   0.7   6.8e-05     0.077       3      48 ..      26      73 ..      24      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.049
   PF13414.1 17 gdydeAieayekAl 30
                + y+ A+e y++A 
  MMETSP0890-20130614|2386_1  8 RSYETAVEWYRRAA 21
                56999999999995 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.8e-05
   PF13414.1  3 AealkelGnalfk....egdydeAieayekAleldpnnaelyynlAlayl 48
                A a  +lGn +++    e+ yd A+e +++A +    na + + l+ +y 
  MMETSP0890-20130614|2386_1 26 AVAQCNLGNFYYHgygiEQSYDTAVEWLRRAADQG--NARAEASLGECYS 73
                78899*********9999*************9876..6777777777775 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.014        16      17      31 ..      10      24 ..       7      35 .. 0.71
   2 !   11.1   0.3   0.00041      0.46      15      37 ..      44      66 ..      24      71 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.014
   PF13428.1 17 pdeAiallrralala 31
                ++ A++++rra+ ++
  MMETSP0890-20130614|2386_1 10 YETAVEWYRRAADQG 24
                789*******95543 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00041
   PF13428.1 15 GdpdeAiallrralalaPddaea 37
                + +d A+++lrra+ ++  +aea
  MMETSP0890-20130614|2386_1 44 QSYDTAVEWLRRAADQGNARAEA 66
                569**********8888777766 PP

>> PF13559.1  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0016       1.8      14      40 ..       5      28 ..       1      37 [. 0.82
   2 ?    6.0   0.1    0.0089        10      16      36 ..      43      62 ..      35      73 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0016
   PF13559.1 14 GlprapseTprEfarrlaaagpaaala 40
                G++r   eT+ E++rr+a++g a  +a
  MMETSP0890-20130614|2386_1  5 GVERS-YETAVEWYRRAADQGLA--VA 28
                67777.9**********998876..54 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0089
   PF13559.1 16 prapseTprEfarrlaaagpa 36
                +    +T+ E++rr+a++g a
  MMETSP0890-20130614|2386_1 43 EQS-YDTAVEWLRRAADQGNA 62
                444.89*********888876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.012        14      17      27 ..      10      20 ..       7      23 .. 0.89
   2 ?    5.4   0.3     0.011        13       1      12 [.      26      37 ..      26      38 .. 0.87
   3 ?    2.3   0.0      0.11   1.3e+02      16      27 ..      45      56 ..      40      58 .. 0.83
   4 ?    0.9   0.0       0.3   3.4e+02       1      12 [.      62      73 ..      62      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
                HHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekA 27
                y+ A+e y++A
  MMETSP0890-20130614|2386_1 10 YETAVEWYRRA 20
                999*******9 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.011
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a a +nlGn y+
  MMETSP0890-20130614|2386_1 26 AVAQCNLGNFYY 37
                6799*******8 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.11
                -HHHHHHHHHHH CS
  PF00515.23 16 kydeAleyyekA 27
                 yd A+e  ++A
  MMETSP0890-20130614|2386_1 45 SYDTAVEWLRRA 56
                5999***99998 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.3
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a+a   lG +y 
  MMETSP0890-20130614|2386_1 62 ARAEASLGECYS 73
                6788899***96 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0009         1      18      34 ..       7      23 ..       2      29 .. 0.84
   2 ?    2.5   0.0      0.11   1.2e+02      28      39 ..      46      57 ..      43      77 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0009
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +  ye A+e+Y+ A++ 
  MMETSP0890-20130614|2386_1  7 ERSYETAVEWYRRAADQ 23
                567***********975 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.11
                HHHHHHHHHHHH CS
  PF04212.13 28 YkeAlelLlqal 39
                Y  A+e L +a 
  MMETSP0890-20130614|2386_1 46 YDTAVEWLRRAA 57
                333333333332 PP

>> PF11193.3  Protein of unknown function (DUF2812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00019      0.21       2      45 ..       9      53 ..       8      65 .. 0.79
   2 ?    2.5   0.0      0.12   1.4e+02       2      18 ..      45      61 ..      44      72 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
   PF11193.3  2 dlekeekwLnkmakkGwrlkkigfiaytFek.gepkkyeyavdfr 45
                ++e   +w ++ a +G+++ +++ + ++++  g +++y  av+  
  MMETSP0890-20130614|2386_1  9 SYETAVEWYRRAADQGLAVAQCNLGNFYYHGyGIEQSYDTAVEWL 53
                678899********************5555438888888888776 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.12
   PF11193.3  2 dlekeekwLnkmakkGw 18
                +++   +wL++ a +G 
  MMETSP0890-20130614|2386_1 45 SYDTAVEWLRRAADQGN 61
                688899*********95 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.011        12      15      29 ..      10      22 ..       7      29 .. 0.83
   2 ?    5.6   0.2     0.012        14       3      27 ..      30      56 ..      23      67 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
   PF13176.1 15 yekAielyeraLalt 29
                ye+A+e y+r  a +
  MMETSP0890-20130614|2386_1 10 YETAVEWYRR--AAD 22
                9*********..654 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.012
   PF13176.1  3 lnLarlysr....lgdyekAielyeraLa 27
                +nL++ y       + y++A+e ++r  a
  MMETSP0890-20130614|2386_1 30 CNLGNFYYHgygiEQSYDTAVEWLRR--A 56
                56666655556666778888888888..5 PP

>> PF07400.6  Interleukin 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        14     103     128 ..       9      34 ..       6      38 .. 0.89
   2 ?    4.9   0.0     0.013        15     103     127 ..      45      69 ..      42      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.012
   PF07400.6 103 sylrhvqwlrraggsslktlepelgt 128
                 sy   v+w rra+ + l   + +lg 
  MMETSP0890-20130614|2386_1   9 SYETAVEWYRRAADQGLAVAQCNLGN 34 
                 78999************999999986 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.013
   PF07400.6 103 sylrhvqwlrraggsslktlepelg 127
                 sy   v+wlrra+ +     e  lg
  MMETSP0890-20130614|2386_1  45 SYDTAVEWLRRAADQGNARAEASLG 69 
                 78999*******9988888887777 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.024        27      17      28 ..      10      21 ..       7      23 .. 0.87
   2 ?    1.6   0.1      0.25   2.8e+02       3      13 ..      28      38 ..      25      39 .. 0.76
   3 ?    2.5   0.0      0.13   1.5e+02      17      28 ..      46      57 ..      42      60 .. 0.86
   4 ?   -2.5   0.0       5.2   5.9e+03       7      11 ..      68      72 ..      62      74 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.024
                HHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAl 28
                ye A+e++++A 
  MMETSP0890-20130614|2386_1 10 YETAVEWYRRAA 21
                899*******96 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyk 13
                a +nlG+ yy+
  MMETSP0890-20130614|2386_1 28 AQCNLGNFYYH 38
                67889998885 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.13
                HHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAl 28
                y+ A+e++++A 
  MMETSP0890-20130614|2386_1 46 YDTAVEWLRRAA 57
                999******996 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 5.2
                HHHHH CS
  PF07719.12  7 lGlay 11
                lG++y
  MMETSP0890-20130614|2386_1 68 LGECY 72
                56666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 286.84
//
Query:       MMETSP0890-20130614|2398_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.30s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 277.47
//
Query:       MMETSP0890-20130614|2401_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   24.8   0.5      0.001   18.7   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat
    6.3e-05   21.2   0.1    6.3e-05   21.2   0.1    1.0  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.076   13.1   0.0       0.13   12.3   0.0    1.4  1  PF13284.1  Domain of unknown function (DUF4072)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.3e-07     0.001      22      39 .]       3      20 ..       1      20 [. 0.89
   2 !    5.1   0.0    0.0045        21       3      30 ..      26      51 ..      24      52 .] 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.3e-07
                SSTEEEEEETTSEEEEEE CS
  PF00400.27 22 dgpllasgSrDgtirlWd 39
                d++++a++S+D+ +rlW+
  MMETSP0890-20130614|2401_1  3 DSSMIATASDDHAVRLWN 20
                4679*************7 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0045
                EEEEEESSSSSEEEEEEESSSTEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgS 30
                c++tl++  + V  vafs   ++l+ +S
  MMETSP0890-20130614|2401_1 26 CLHTLQHN-AIVLEVAFSKL-NRLVVAS 51
                77777777.*********99.7777666 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.4e-08   6.3e-05     231     258 ..       4      31 ..       2      50 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.4e-08
   PF11715.3 231 qtfvftlsrDgkLRvWnletgqclrttd 258
                 +++++t s D+ +R+Wn +t++cl t  
  MMETSP0890-20130614|2401_1   4 SSMIATASDDHAVRLWNADTYACLHTLQ 31 
                 789********************88875 PP

>> PF13284.1  Domain of unknown function (DUF4072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05      0.13      24      41 ..       5      23 ..       2      25 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.9e-05
   PF13284.1 24 srier.idaqAaRledAdp 41
                s i + +d++A+Rl++Ad+
  MMETSP0890-20130614|2401_1  5 SMIATaSDDHAVRLWNADT 23
                5677779**********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 197.79
//
Query:       MMETSP0890-20130614|2393_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-64  216.5   0.0    6.3e-64  216.0   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   0.0   4.6e-68   6.3e-64       2     306 ..     441     748 ..     440     754 .. 0.92

  Alignments for each domain:
  == domain 1    score: 216.0 bits;  conditional E-value: 4.6e-68
                 HHHHHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHH CS
  PF00632.20   2 llskellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAi 306
                 ll+ elln ++glf  y  +++++     +++ +   +++++ + ++f+G+++gk+i+eg++++ + + ++lk+++ ++++++e+l+ +d ++ +sl+ l  l+++  +ve+laltF+i  +  ++e+ + elip+G+ni Vt +n++++i+l  + ++ +  k+ l+a+++G+++v+p ++l l++++elel +cG ++ idv+++r++++y+g+++   +++p+++ +wei++++ +e+++++L+ +TG+ ++P++Gf+ l+      +kf+      d++ +P a+TCfn+++Lp ++ k+ l++ L + i
  MMETSP0890-20130614|2393_1 441 LLIDELLNVSYGLF-RYGAGYTYQLADDRDSSVQFGGNEKNRDARYTFVGRILGKIILEGHMISAHPAMPLLKHIV-TEPIKFENLQALDYDYWKSLNDLTMLDAD--QVESLALTFSIAYEH-FGEHIERELIPGGKNIAVTGNNVRQFIELRLKDRVCDVHKRGLSALLRGIYDVVPPDLLMLLSARELELALCGIPD-IDVNEWRNSCQYGGEFKeqkEEHPVVRFFWEIVSSWPNEKKAQLLQWCTGTASVPVQGFEYLQgrdgviRKFQLTSIGIDQAIYPRAHTCFNRIDLPLFDLKSELEDALDFVI 748
                 7899**********.899999998887766666666777788899*******************************.9***********************88766..589*******86555.6666689*********************************************************************.**************999787899****************************************88888888888877799999************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.21u 0.42s 00:00:01.63 Elapsed: 00:00:01.15
# Mc/sec: 1574.16
//
Query:       MMETSP0890-20130614|2396_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-47  161.1   0.0    3.1e-47  160.8   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    4.4e-17   61.8   0.1    7.1e-08   31.5   0.0    2.0  2  PF02719.10 Polysaccharide biosynthesis protein
    1.2e-14   53.7   0.0    1.4e-14   53.5   0.0    1.0  1  PF04321.12 RmlD substrate binding domain
    2.6e-13   49.3   0.0    3.4e-13   48.9   0.0    1.2  1  PF07993.7  Male sterility protein
    2.1e-09   36.3   0.0    2.5e-09   36.1   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   1.1e-50   3.1e-47      70     236 .]       1     165 [.       1     165 [. 0.98

  Alignments for each domain:
  == domain 1    score: 160.8 bits;  conditional E-value: 1.1e-50
                 EE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---B..SSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE- CS
  PF01370.16  70 ihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasSsevygkd..aeqpikEetplgplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgdvageiyniG 236
                 +h+Aa+++vd+s+ +  +f ++n+ gt  lleaa+ +++++f+++s++evyg+   ++ p+ E+  l+p++pYaa+K+ +e l+++y+++++l++ii+r  nvyGp+   ++++++ip++i+++ +g++vtl gdG++ R fl+veDva+a+  +l +g   g+iyniG
  MMETSP0890-20130614|2396_1   1 MHFAAQTHVDNSFGNSIQFTRNNILGTHVLLEAAKIHNITKFIHVSTDEVYGEGhdDQAPMIEDHVLEPTNPYAATKAGAEFLAKSYHRSFKLPIIITRGNNVYGPH---QFPEKLIPKFINQLERGRPVTLHGDGKNTRNFLFVEDVARAFDVILHKGI-VGKIYNIG 165
                 7*****************************************************7666689**********************************************...**************************************************.*******9 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   2.5e-10   6.7e-07      82     130 ..       1      49 [.       1      52 [. 0.97
   2 !   31.5   0.0   2.6e-11   7.1e-08     129     255 ..      64     191 ..      60     200 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 2.5e-10
  PF02719.10  82 fhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvvliStDK 130
                 +h AA  hV     n ++  ++N+lgt+ ++eaa+ ++++k++ +StD 
  MMETSP0890-20130614|2396_1   1 MHFAAQTHVDNSFGNSIQFTRNNILGTHVLLEAAKIHNITKFIHVSTDE 49 
                 599*********************************************6 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 2.6e-11
  PF02719.10 129 DKAvnPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlgSr...GSviplFkkqikeggpvtv.TdpemtRyfmtieeavqLvlqagalakggeifvldmGepvkivdlakalielsgleekeke 255
                 D   +Ptn + atK+ ae l+ +++++    k  ++++R  NV g +     +ip F +q+++g+pvt+  d + tR f+ +e+ ++     ++++  g+i+     + v+ +d+ak++++++gl+ ++++
  MMETSP0890-20130614|2396_1  64 DHVLEPTNPYAATKAGAEFLAKSYHRSF---KLPIIITRGNNVYGPHqfpEKLIPKFINQLERGRPVTLhGDGKNTRNFLFVEDVARAFDVILHKGIVGKIYNIGGSNEVSNIDVAKEIMKVMGLSDRQEA 191
                 78899***************99999988...89************9733358****************945899**********99998888999999999988888999999***********9988743 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0     5e-18   1.4e-14      57     247 ..       2     202 ..       1     223 [. 0.82

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 5e-18
                 E------HHHHHH-HHHHHHHHT---HHHHHHHHH---.EEEEEEEGGG--.--.-SS-B-TTS-----S----TTT---HHHHHH-S....SEEEEEE-SEE--...---HHHHHHH-----SEEEEESS..-B---EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH-----....EEEEE-GGGS- CS
  PF04321.12  57 naAAytavdkaEseeeeayavnaegpenlAeaaaavga.llihiSTdyVFd.Ge.kkrpYeeddetaPlnvYGrtKlaGEqavlaanp....kalivRtawvyge..kgknfvktmlrlaaereelkvvaD..qlgsPTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadg...eevkpissaefp 247
                 ++AA t vd+   ++ +  + n  g++ l eaa+ +++ ++ih+STd V+  G+ ++ p  ed+  +P n Y++tK+  E   ++++       +i R   vyg     ++++ +++++++++ ++++  D   + +   +ed+A++   +l+k +       +y++ +s+e+s +d+A++i+k +g +    + ++ +++ +f+
  MMETSP0890-20130614|2396_1   2 HFAAQTHVDNSFGNSIQFTRNNILGTHVLLEAAKIHNItKFIHVSTDEVYGeGHdDQAPMIEDHVLEPTNPYAATKAGAEFLAKSYHRsfklPIIITRGNNVYGPhqFPEKLIPKFINQLERGRPVTLHGDgkNTRNFLFVEDVARAFDVILHKGIV----GKIYNIGGSNEVSNIDVAKEIMKVMGLSDrqeALISFVPDRAFN 202
                 99********************************9987369*********536646667*********************99998655221357899*******9444689999999*********9999833456667788888888888888887....99*********************999877555556666665555 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.2e-16   3.4e-13      92     248 ..       1     148 [.       1     149 [. 0.80

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.2e-16
   PF07993.7  92 ihsAAtvnfeepyke...llrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivg.esetGwiegsdlgldgllggvakgvlpeilgdpearldlvpvDyvana 248
                 +h AA+++++++  +   + r N+lGt+ +le ak ++   ++hvST  v+ge ++        +  + +++  + +n Y+ +Ka aE l ++++r+ +lp++i R  +++g ++++      + ++  ++  +++g+  +++gd +++ +++ v+ va+a
  MMETSP0890-20130614|2396_1   1 MHFAAQTHVDNSFGNsiqFTRNNILGTHVLLEAAKIHNITKFIHVSTDEVYGEGHDD-------QAPMIEDHVLEPTNPYAATKAGAEFLAKSYHRSFKLPIIITRGNNVYGpHQFP-----EK-LIPKFINQLERGRPVTLHGDGKNTRNFLFVEDVARA 148
                 59*******9987764447899*************66666*******6666666654.......6788899999999**********************************943333.....23.456677777777777777777777777777777765 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   9.1e-13   2.5e-09      87     225 ..      18     149 ..       1     192 [. 0.78

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 9.1e-13
  PF01073.14  87 eilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgq.eilnGdEetpyesthkdaYaesKalAEklvlkangrtlknggrllTcAlRpagiyGegd..kllvraleellksglallkigekevlsdrvYvgNvawah 225
                 ++ + n+ GT+ +lea++ +++++++++S+ ev g+    q +++   E   +   ++++Ya +Ka AE l ++          +l  +  R   +yG+ +  ++l ++  + l+ g  ++  g+ +++ ++ +v+ va a+
  MMETSP0890-20130614|2396_1  18 QFTRNNILGTHVLLEAAKIHNITKFIHVSTDEVYGEGHDDQaPMI---E--DHVLEPTNPYAATKAGAEFLAKSYHR-S----FKLPIIITRGNNVYGPHQfpEKLIPKFINQLERGRPVTLHGDGKNTRNFLFVEDVARAF 149
                 456789*****************************9444331333...4..45566789**********87666555.3....36778889*******99755788899999999999*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 654.61
//
Query:       MMETSP0890-20130614|2406_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-06   24.9   0.1    9.6e-06   24.7   0.1    1.0  1  PF07714.12 Protein tyrosine kinase
    0.00036   19.6   0.1     0.0004   19.4   0.0    1.0  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.4e-09   9.6e-06     196     254 ..       2      63 ..       1      69 [. 0.77

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.4e-09
                 HHHHTTT-GTTTTSHHHHHHHHH.HTT-B..S--.-TTSBHHHHHHHHHHT-SSGGGS--HHH CS
  PF07714.12 196 wEiftlgespypglsneevlell.kegkr..lek.pekcpeelyelmkqCweeepeeRptfke 254
                 +Ei+t  ++p+ gl+++e++ ++  ++kr  +++  e+ +e l  ++k+Cw++++++Rp++k+
  MMETSP0890-20130614|2406_1   2 FEIVT-RKQPWDGLNPMEIMMTVsVKKKRpeIATsDETRHEVLVAILKECWNQDATQRPSLKD 63 
                 89999.56*********99998854444423344145556667899**************985 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.9e-08    0.0004     190     253 ..       2      63 ..       1      69 [. 0.70

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.9e-08
                 HHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHH CS
  PF00069.20 190 yelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaee 253
                 +e++t+k p++g +  + + ++  ++k++    ++++  ++e l  ++k+++++d+++R+++++
  MMETSP0890-20130614|2406_1   2 FEIVTRKQPWDGLNPMEIMMTVSVKKKRPEIATSDET--RHEVLVAILKECWNQDATQRPSLKD 63 
                 6899*******99444433333333333333333333..3499*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.51
# Mc/sec: 390.00
//
Query:       MMETSP0890-20130614|2411_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   24.7   0.0    2.5e-05   23.8   0.0    1.5  1  PF03909.12 BSD domain


Domain annotation for each model (and alignments):
>> PF03909.12  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.8e-09   2.5e-05       7      58 ..     151     201 ..     145     204 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.8e-09
  PF03909.12   7 kfkadedaeeiqalLkedpeLrklryelVPskmseeeFWarYFyllraiaik 58 
                  +++ +++ +i +l++ dp L k++ +l  +k+ e++FW+++Fy+   ++++
  MMETSP0890-20130614|2411_1 151 SLDVRKRKSLIMELFRHDPILLKAHARL-AHKLGENIFWRNFFYHCALLRQR 201
                 567788999*******************.677************98888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.77
# Mc/sec: 1002.11
//
Query:       MMETSP0890-20130614|2419_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-37  127.0   3.1    5.4e-24   83.8   0.2    2.0  2  PF13424.1  Tetratricopeptide repeat
      1e-29  101.3   1.0    3.5e-15   55.2   0.1    2.1  2  PF13374.1  Tetratricopeptide repeat
    1.2e-15   55.9   0.3    1.8e-07   30.3   0.2    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.7e-14   52.3   1.5    9.2e-07   28.2   0.1    2.2  2  PF07719.12 Tetratricopeptide repeat
    8.1e-14   50.4   3.2    5.3e-07   28.8   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    6.2e-13   48.0   0.8    1.1e-12   47.3   0.5    1.4  1  PF13414.1  TPR repeat
    1.3e-08   33.9   1.3     0.0034   16.9   0.1    2.2  2  PF13181.1  Tetratricopeptide repeat
    1.5e-08   34.9   0.6    3.3e-08   33.8   0.4    1.6  1  PF13432.1  Tetratricopeptide repeat
    2.6e-08   33.6   0.2     0.0053   17.1   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    3.4e-06   26.7   3.2      0.024   14.6   0.0    3.4  3  PF13431.1  Tetratricopeptide repeat
    1.5e-05   25.0   0.6       0.15   12.4   0.1    2.4  2  PF13174.1  Tetratricopeptide repeat
    6.2e-05   22.6   0.1      0.087   12.6   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    7.1e-05   22.7   0.0       0.18   12.2   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
     0.0013   17.8   0.0       0.15   11.2   0.0    2.2  2  PF10516.4  SHNi-TPR
     0.0024   17.8   0.0     0.0044   17.0   0.0    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0046   16.8   0.1     0.0072   16.2   0.0    1.3  1  PF12688.2  Tetratrico peptide repeat
  ------ inclusion threshold ------
      0.017   14.9   0.2       0.64   10.0   0.0    2.8  3  PF01535.15 PPR repeat
       0.14   11.8   1.5        2.7    7.7   0.0    2.4  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.2   7.1e-27   5.4e-24       4      78 .]       3      78 ..       1      78 [. 0.96
   2 !   49.6   0.1   3.2e-16   2.5e-13       5      50 ..      46      92 ..      45      93 .] 0.94

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 7.1e-27
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                +at lnnla++l+ +g+ydeA   ye+a+e+  +++g++h+++a+ lnnla l++++g+ydeA++++e++l+i+e+
  MMETSP0890-20130614|2419_1  3 VATGLNNLAGLLENQGNYDEAKPRYERAIEIwKKVHGPNHLQVATGLNNLAGLLRKQGKYDEAKRLYERSLKIREE 78
                7999***************************88899*************************************985 PP

  == domain 2    score: 49.6 bits;  conditional E-value: 3.2e-16
   PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaraln 50
                at lnnla++lr++g+ydeA  lye++l++  ++lg++hpd+a +ln
  MMETSP0890-20130614|2419_1 46 ATGLNNLAGLLRKQGKYDEAKRLYERSLKIrEETLGRNHPDVAQSLN 92
                7889**************************88889**********98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.8e-15   4.4e-12       1      40 [.       3      42 ..       3      44 .. 0.97
   2 !   55.2   0.1   4.6e-18   3.5e-15       1      42 []      45      86 ..      45      86 .. 0.97

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 5.8e-15
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40
                +a+ lnnLA +l ++g+y+eA + +e+a +i+++++G++H
  MMETSP0890-20130614|2419_1  3 VATGLNNLAGLLENQGNYDEAKPRYERAIEIWKKVHGPNH 42
                6888************************************ PP

  == domain 2    score: 55.2 bits;  conditional E-value: 4.6e-18
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +lr++g+y+eA +l+e++l ir++ lG++HPd
  MMETSP0890-20130614|2419_1 45 VATGLNNLAGLLRKQGKYDEAKRLYERSLKIREETLGRNHPD 86
                6888*************************************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.4e-08   1.9e-05       2      33 ..       7      38 ..       6      41 .. 0.90
   2 !   30.3   0.2   2.3e-10   1.8e-07       2      35 ..      49      82 ..      48      83 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.4e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpl 33
                l+nLa l +++g+y++A   yera++++k   
  MMETSP0890-20130614|2419_1  7 LNNLAGLLENQGNYDEAKPRYERAIEIWKKVH 38
                89*********************999887665 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 2.3e-10
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdplda 35
                l+nLa l +++g+y++A +lyer+L+++++ l++
  MMETSP0890-20130614|2419_1 49 LNNLAGLLRKQGKYDEAKRLYERSLKIREETLGR 82
                89*************************9998775 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.4e-08   2.6e-05       2      30 ..       5      33 ..       4      33 .. 0.94
   2 !   28.2   0.1   1.2e-09   9.2e-07       2      31 ..      47      76 ..      46      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.4e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                 +l+nl+ +++++g+y+eA+  +e+A+e+
  MMETSP0890-20130614|2419_1  5 TGLNNLAGLLENQGNYDEAKPRYERAIEI 33
                689************************96 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 1.2e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                 +l+nl+ +++k+g+y+eA++++e++l++ 
  MMETSP0890-20130614|2419_1 47 TGLNNLAGLLRKQGKYDEAKRLYERSLKIR 76
                689************************986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   6.9e-08   5.2e-05       2      30 ..       5      33 ..       4      36 .. 0.93
   2 !   28.8   0.2   6.9e-10   5.3e-07       2      32 ..      47      77 ..      46      78 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 6.9e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                  l+nl+ ++ ++g+ydeA   ye+A+e+
  MMETSP0890-20130614|2419_1  5 TGLNNLAGLLENQGNYDEAKPRYERAIEI 33
                579*************************8 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 6.9e-10
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                  l+nl+ +++k+gkydeA   ye+ L++++
  MMETSP0890-20130614|2419_1 47 TGLNNLAGLLRKQGKYDEAKRLYERSLKIRE 77
                579*************************976 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.5   1.4e-15   1.1e-12       3      68 ..       4      76 ..       2      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.4e-15
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnn...aelyynlAlaylklgkdyeeAledyekAleld 68
                A  l++l+  l ++g+ydeA   ye+A+e++     pn+   a  ++nlA +++k+g +y+eA + ye++l+++
  MMETSP0890-20130614|2419_1  4 ATGLNNLAGLLENQGNYDEAKPRYERAIEIWkkvhgPNHlqvATGLNNLAGLLRKQG-KYDEAKRLYERSLKIR 76
                55689*************************87777788754455*************.6************986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     8e-06    0.0061       4      30 ..       7      33 ..       4      35 .. 0.93
   2 !   16.9   0.1   4.5e-06    0.0034       4      31 ..      49      76 ..      46      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8e-06
                TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                ++nl+ ++++ G+yd+Ak  +e+a+e+
  MMETSP0890-20130614|2419_1  7 LNNLAGLLENQGNYDEAKPRYERAIEI 33
                8999*********************97 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.5e-06
                TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                ++nl+ ++r+ G+yd+Ak  +e+ l++ 
  MMETSP0890-20130614|2419_1 49 LNNLAGLLRKQGKYDEAKRLYERSLKIR 76
                899**********************996 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.4   4.4e-11   3.3e-08       3      60 ..      10      75 ..       8      88 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 4.4e-11
   PF13432.1  3 lArallraGdydeAlaaleaalala.....Pe...aaeallllaeallrlgrldeAaallraalal 60
                lA +l ++G+ydeA + +e+a++ +     P     a  l +la +l ++g++deA +l+++ l++
  MMETSP0890-20130614|2419_1 10 LAGLLENQGNYDEAKPRYERAIEIWkkvhgPNhlqVATGLNNLAGLLRKQGKYDEAKRLYERSLKI 75
                8999*********************9999944555***************************9965 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     7e-06    0.0053       4      37 ..       7      45 ..       4      50 .. 0.80
   2 !   15.3   0.1   2.7e-05      0.02       4      32 ..      49      77 ..      46      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7e-06
   PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaea 37
                l  la +l+++G++deA   ++ra++     ++P+++++
  MMETSP0890-20130614|2419_1  7 LNNLAGLLENQGNYDEAKPRYERAIEiwkkvHGPNHLQV 45
                5679*********************96665566766665 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.7e-05
   PF13428.1  4 llalarallalGdpdeAiallrralalaP 32
                l  la +l+ +G +deA +l++r l+   
  MMETSP0890-20130614|2419_1 49 LNNLAGLLRKQGKYDEAKRLYERSLKIRE 77
                5679*******************998654 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00054      0.41      16      33 ..       7      24 ..       4      25 .. 0.92
   2 !   14.6   0.0   3.2e-05     0.024       2      33 ..      27      66 ..      26      67 .. 0.89
   3 ?   -0.7   0.0       2.7     2e+03       1       8 [.      68      75 ..      68      78 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00054
   PF13431.1 16 ynnLAelllnnGdleeAe 33
                +nnLA ll n+G+++eA+
  MMETSP0890-20130614|2419_1  7 LNNLAGLLENQGNYDEAK 24
                79**************97 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3.2e-05
   PF13431.1  2 yekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                ye+a+e+      Pn+   a  +nnLA ll ++G+++eA+
  MMETSP0890-20130614|2419_1 27 YERAIEIWkkvhgPNHlqvATGLNNLAGLLRKQGKYDEAK 66
                99999997667778889999999****************7 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 2.7
   PF13431.1  1 lyekalel 8 
                lye++l++
  MMETSP0890-20130614|2419_1 68 LYERSLKI 75
                7****997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0007      0.53       6      28 ..      10      32 ..       9      36 .. 0.86
   2 !   12.4   0.1    0.0002      0.15       6      25 ..      52      71 ..      51      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0007
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la +++++g++deA+  +er i+
  MMETSP0890-20130614|2419_1 10 LAGLLENQGNYDEAKPRYERAIE 32
                666788899***********997 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.0002
                HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealer 25
                la +++k+g++deA++++er
  MMETSP0890-20130614|2419_1 52 LAGLLRKQGKYDEAKRLYER 71
                666788899*********98 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00011     0.087      15      37 ..      14      36 ..       5      39 .. 0.91
   2 !    8.2   0.0    0.0026         2      18      34 ..      59      75 ..      56      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
                HHHTT-HHHHHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlelLlq 37
                 +++g+y+eA   Y+ A+e++ +
  MMETSP0890-20130614|2419_1 14 LENQGNYDEAKPRYERAIEIWKK 36
                699****************9876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0026
                TT-HHHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAlel 34
                +gky+eA +lY+ +l++
  MMETSP0890-20130614|2419_1 59 QGKYDEAKRLYERSLKI 75
                89**********99986 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0032       2.4       4      26 .]       7      29 ..       4      29 .. 0.85
   2 !   12.2   0.0   0.00024      0.18       4      26 .]      49      71 ..      46      71 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0032
                H---HHHHHH-------HHHHHT CS
   PF07721.9  4 llaLArallalGdldeAraller 26
                l +LA +l  +G++deA    er
  MMETSP0890-20130614|2419_1  7 LNNLAGLLENQGNYDEAKPRYER 29
                568999***********887776 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00024
                H---HHHHHH-------HHHHHT CS
   PF07721.9  4 llaLArallalGdldeAraller 26
                l +LA +l  +G +deA +l er
  MMETSP0890-20130614|2419_1 49 LNNLAGLLRKQGKYDEAKRLYER 71
                5699****************997 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.022        17      14      36 ..      17      39 ..      13      41 .. 0.85
   2 !   11.2   0.0    0.0002      0.15      12      35 ..      57      80 ..      49      82 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.022
   PF10516.4 14 nEnFpqAveDlrkaLeLreqllp 36
                ++n+++A   +++a+e+  +++ 
  MMETSP0890-20130614|2419_1 17 QGNYDEAKPRYERAIEIWKKVHG 39
                58**************9777665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.0002
   PF10516.4 12 lEnEnFpqAveDlrkaLeLreqll 35
                  ++++++A   ++++L++re++l
  MMETSP0890-20130614|2419_1 57 RKQGKYDEAKRLYERSLKIREETL 80
                567899999999**********87 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.8e-06    0.0044       1      59 [.      16      81 ..      16      88 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.8e-06
                HTT-HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHH CS
   PF12895.2  1 eqhnyknAlflaekllaespk....dp..edaylyalAlclylngeykrAyellrk.leldssslg 59
                +q+ny++A   +e++++  +k    ++   ++ l +lA  l ++g+y++A  l+++ l++++++lg
  MMETSP0890-20130614|2419_1 16 NQGNYDEAKPRYERAIEIWKKvhgpNHlqVATGLNNLAGLLRKQGKYDEAKRLYERsLKIREETLG 81
                588999999999999999988775422323335556799999999999999999888777776654 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.4e-06    0.0072       6      67 ..       9      75 ..       4      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 9.4e-06
   PF12688.2  6 eragarDstGeeakAvplYrrAla.....aGLagarrrratiqlaSsLRnlGrveeslalleaelae 67
                + ag  +  G+ ++A p Y+rA++     +G +  +       la  LR  G+ +e+ +l e+ l+ 
  MMETSP0890-20130614|2419_1  9 NLAGLLENQGNYDEAKPRYERAIEiwkkvHGPNHLQVATGLNNLAGLLRKQGKYDEAKRLYERSLKI 75
                6799999***************9855333455555555566689999**************999874 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.98   7.5e+02       7      19 ..      11      23 ..       7      24 .. 0.72
   2 ?    0.7   0.0      0.75   5.7e+02      15      25 ..      26      36 ..      26      39 .. 0.85
   3 ?   10.0   0.0   0.00084      0.64       4      25 ..      50      71 ..      49      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.98
  PF01535.15  7 IsgyckaGkleeA 19
                   +   G+++eA
  MMETSP0890-20130614|2419_1 11 AGLLENQGNYDEA 23
                55566789****9 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.75
  PF01535.15 15 kleeAlelfke 25
                ++e A+e++k+
  MMETSP0890-20130614|2419_1 26 RYERAIEIWKK 36
                5899*****97 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00084
  PF01535.15  4 nslIsgyckaGkleeAlelfke 25
                n l   + k Gk++eA +l+++
  MMETSP0890-20130614|2419_1 50 NNLAGLLRKQGKYDEAKRLYER 71
                67777889************97 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.12        92      13      20 ..      16      23 ..      14      28 .. 0.94
   2 ?    7.7   0.0    0.0035       2.7      14      35 ..      59      78 ..      58      79 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.12
                HTT-HHHH CS
   PF07720.7 13 nkkkyqeA 20
                n+++y+eA
  MMETSP0890-20130614|2419_1 16 NQGNYDEA 23
                89*****9 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0035
                TT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7 14 kkkyqeArelfsYallaildke 35
                ++ky+eA  l  Y+ + ++++e
  MMETSP0890-20130614|2419_1 59 QGKYDEAKRL--YERSLKIREE 78
                8*********..8888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.71
# Mc/sec: 313.89
//
Query:       MMETSP0890-20130614|2420_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   50.6   0.0    1.3e-13   50.6   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    3.1e-05   23.5   0.0    3.9e-05   23.1   0.0    1.2  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.9e-17   1.3e-13       3      50 ..       2      49 ..       1      51 [] 0.53

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1.9e-17
   PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteig 50
                Ig+ aF++c++lt++ +p  +t+Ige+aF++c sl+++tlp+s+t i 
  MMETSP0890-20130614|2420_1  2 IGEWAFSGCTSLTQLILPAGLTRIGESAFRGCVSLTRLTLPDSVTDIR 49
                555555555555555555555555555555555555555555555554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.7e-09   3.9e-05      17      57 ..       3      42 ..       1      46 [. 0.92

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 5.7e-09
   PF13855.1 17 pdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57
                ++ aF+g+++L+ L L    l++i + af g++sL+ L L 
  MMETSP0890-20130614|2420_1  3 GEWAFSGCTSLTQLILP-AGLTRIGESAFRGCVSLTRLTLP 42
                5569*************.********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        92  (0.00672908); expected 273.4 (0.02)
Passed bias filter:                       91  (0.00665594); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.36s 00:00:00.64 Elapsed: 00:00:00.70
# Mc/sec: 174.59
//
Query:       MMETSP0890-20130614|2430_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-41  140.6   0.2    1.6e-24   85.5   0.0    2.0  2  PF13424.1  Tetratricopeptide repeat
    2.2e-36  122.5   0.7    2.3e-13   49.4   0.1    3.2  3  PF13374.1  Tetratricopeptide repeat
    6.4e-18   63.4   1.5    8.4e-06   25.0   0.0    3.1  3  PF00515.23 Tetratricopeptide repeat
    1.2e-15   55.9   0.8    4.4e-05   22.9   0.0    3.1  3  PF07719.12 Tetratricopeptide repeat
    1.7e-15   57.0   4.5    5.2e-07   30.0   0.1    2.6  3  PF13432.1  Tetratricopeptide repeat
    1.8e-15   56.1   0.2    9.6e-09   34.6   0.0    2.1  2  PF13414.1  TPR repeat
    3.5e-14   51.2   0.0    0.00089   18.7   0.0    3.1  3  PF13176.1  Tetratricopeptide repeat
    7.6e-11   41.2   2.0     0.0019   18.1   0.0    4.1  3  PF13431.1  Tetratricopeptide repeat
    1.9e-09   36.5   0.2     0.0006   19.2   0.0    3.1  3  PF13181.1  Tetratricopeptide repeat
    2.4e-08   33.7   0.1      0.059   13.9   0.0    3.1  3  PF13428.1  Tetratricopeptide repeat
    4.5e-06   26.5   0.0     0.0021   18.0   0.0    2.1  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    2.2e-05   24.6   1.3        1.8    8.9   0.0    3.1  3  PF14357.1  Domain of unknown function (DUF4404)
    0.00011   21.1   0.0      0.067   12.0   0.0    2.1  2  PF04910.9  Transcriptional repressor TCF25
    0.00095   19.2   0.0          4    8.0   0.0    3.3  3  PF07721.9  Tetratricopeptide repeat
     0.0039   17.4   0.2        3.9    8.0   0.0    3.1  3  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.033   13.9   0.1       0.44   10.3   0.0    2.5  3  PF04212.13 MIT (microtubule interacting and transport) domain
      0.033   14.0   0.0       0.15   11.9   0.0    2.0  2  PF12688.2  Tetratrico peptide repeat
      0.042   13.3   0.0       0.44   10.0   0.0    2.3  3  PF04781.7  Protein of unknown function (DUF627)
      0.072   12.8   0.1        1.8    8.3   0.0    2.1  2  PF11846.3  Domain of unknown function (DUF3366)
       0.12   12.0   0.1        9.4    6.0   0.0    2.3  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   2.3e-27   1.6e-24       1      78 []       3      81 ..       3      81 .. 0.98
   2 !   59.3   0.0   3.5e-19   2.4e-16      11      67 ..      55     112 ..      55     114 .] 0.96

  Alignments for each domain:
  == domain 1    score: 85.5 bits;  conditional E-value: 2.3e-27
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hpd+a++lnnla++lr++ +y eA  l+e+al +  ++lg++hpd+a++ln la+l+  +g+ydeA++++e+Alei ek
  MMETSP0890-20130614|2430_1  3 HPDVAQSLNNLAQSLRHQAKYGEAKPLCERALRIhEETLGPNHPDVATTLNILADLLDVQGKYDEAKPFYERALEIVEK 81
                9*********************************99999*************************************986 PP

  == domain 2    score: 59.3 bits;  conditional E-value: 3.5e-19
   PF13424.1  11 lalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAle 67 
                 la++l  +g+ydeA  +ye+ale+  +++g++hp++a++ln la l+  +g+ydeA +
  MMETSP0890-20130614|2430_1  55 LADLLDVQGKYDEAKPFYERALEIvEKVHGPNHPEVATTLNSLAVLLKNQGKYDEAMP 112
                 7899999*************************************************76 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   3.3e-16   2.3e-13       1      42 []       6      47 ..       6      47 .. 0.98
   2 !   47.4   0.0   1.4e-15   9.4e-13       1      42 []      48      89 ..      48      89 .. 0.98
   3 !   22.8   0.0   7.8e-08   5.3e-05       1      24 [.      90     113 ..      90     114 .] 0.96

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 3.3e-16
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a +lnnLA  lr + +y+eA +l e+al i+++ lG++HPd
  MMETSP0890-20130614|2430_1  6 VAQSLNNLAQSLRHQAKYGEAKPLCERALRIHEETLGPNHPD 47
                799**************************************8 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 1.4e-15
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a++ln LA +l  +g+y+eA +++e+al+i ++++G++HP+
  MMETSP0890-20130614|2430_1 48 VATTLNILADLLDVQGKYDEAKPFYERALEIVEKVHGPNHPE 89
                79***************************************6 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 7.8e-08
   PF13374.1   1 taaalnnLAlalrargryeeAlal 24 
                 +a++ln LA++l ++g+y+eA +l
  MMETSP0890-20130614|2430_1  90 VATTLNSLAVLLKNQGKYDEAMPL 113
                 79*******************998 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.1e-07   0.00014       1      31 [.       7      37 ..       7      39 .. 0.94
   2 !   25.0   0.0   1.2e-08   8.4e-06       2      30 ..      50      78 ..      49      81 .. 0.91
   3 !   15.4   0.0   1.3e-05    0.0091       2      21 ..      92     111 ..      91     113 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.1e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a++l+nl++ ++++ ky eA   +e+AL++ 
  MMETSP0890-20130614|2430_1  7 AQSLNNLAQSLRHQAKYGEAKPLCERALRIH 37
                789*************************996 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.2e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                 +l+ l+ ++  +gkydeA  +ye+ALe+
  MMETSP0890-20130614|2430_1 50 TTLNILADLLDVQGKYDEAKPFYERALEI 78
                5788999*********************8 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHTT-HHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAl 21 
                  +l+ l++++ ++gkydeA 
  MMETSP0890-20130614|2430_1  92 TTLNSLAVLLKNQGKYDEAM 111
                 689****************6 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   6.9e-07   0.00047       1      31 [.       7      37 ..       7      40 .. 0.92
   2 !   22.9   0.0   6.4e-08   4.4e-05       3      30 ..      51      78 ..      49      81 .. 0.91
   3 !   10.8   0.0   0.00049      0.34       2      20 ..      92     110 ..      91     113 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.9e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a+ l+nl+++++++ +y eA+ ++e+Al++ 
  MMETSP0890-20130614|2430_1  7 AQSLNNLAQSLRHQAKYGEAKPLCERALRIH 37
                5789************************986 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 6.4e-08
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                 l+ l++++  +g+y+eA+ ++e+Ale+
  MMETSP0890-20130614|2430_1 51 TLNILADLLDVQGKYDEAKPFYERALEI 78
                6889**********************98 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00049
                 HHHHHHHHHHHHTT-HHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeA 20 
                   l+ l+ ++ ++g+y+eA
  MMETSP0890-20130614|2430_1  92 TTLNSLAVLLKNQGKYDEA 110
                 57899************** PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   4.1e-05     0.028      27      63 ..       3      44 ..       1      46 [. 0.84
   2 !   30.0   0.1   7.6e-10   5.2e-07       3      59 ..      13      82 ..      11      88 .. 0.90
   3 !   24.3   0.0   4.8e-08   3.3e-05       3      50 ..      55     110 ..      55     113 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.1e-05
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal.....alaPd 63
                +P+ a+ l +la++l ++ ++ eA  l ++al      l+P+
  MMETSP0890-20130614|2430_1  3 HPDVAQSLNNLAQSLRHQAKYGEAKPLCERALriheeTLGPN 44
                6999***************************96665555555 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 7.6e-10
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....a 59
                lA++l  + +y eA ++ e+al+ +        P+ a  l  la++l  +g++deA  ++++al      
  MMETSP0890-20130614|2430_1 13 LAQSLRHQAKYGEAKPLCERALRIHeetlgpnhPDVATTLNILADLLDVQGKYDEAKPFYERALeivekV 82
                899************************************************************9555554 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 4.8e-08
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeA 50 
                 lA++l  +G+ydeA + +e+al+          Pe a  l  la++l  +g++deA
  MMETSP0890-20130614|2430_1  55 LADLLDVQGKYDEAKPFYERALEIVekvhgpnhPEVATTLNSLAVLLKNQGKYDEA 110
                 6889999************************************************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   1.8e-07   0.00013       2      43 ..       6      55 ..       5      59 .. 0.79
   2 !   34.6   0.0   1.4e-11   9.6e-09       2      58 ..      48     111 ..      47     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.8e-07
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynl 43
                +A++l++l++ l ++ +y eA  ++e+Al++      pn+++    ++ l
  MMETSP0890-20130614|2430_1  6 VAQSLNNLAQSLRHQAKYGEAKPLCERALRIHeetlgPNHPDvatTLNIL 55
                799***************************85555558888755455555 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 1.4e-11
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAl 58 
                 +A +l+ l+  l  +g+ydeA  +ye+Ale+      pn++e    ++ lA ++ ++g +y+eA+
  MMETSP0890-20130614|2430_1  48 VATTLNILADLLDVQGKYDEAKPFYERALEIVekvhgPNHPEvatTLNSLAVLLKNQG-KYDEAM 111
                 57789999999999*****************55566689888888*************.6***96 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.6e-06    0.0018       1      35 [.       9      43 ..       9      44 .. 0.93
   2 !   18.7   0.0   1.3e-06   0.00089       1      31 [.      51      81 ..      51      88 .. 0.87
   3 !   11.5   0.0   0.00027      0.18       1      19 [.      93     111 ..      93     113 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.6e-06
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdplda 35
                +l+nLa+  + + +y +A  l+eraL+++++ l++
  MMETSP0890-20130614|2430_1  9 SLNNLAQSLRHQAKYGEAKPLCERALRIHEETLGP 43
                79*************************99988765 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.3e-06
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                +l+ La+l   +g+y++A  +yeraL++ + 
  MMETSP0890-20130614|2430_1 51 TLNILADLLDVQGKYDEAKPFYERALEIVEK 81
                6899****999*************9988765 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00027
   PF13176.1   1 allnLarlysrlgdyekAi 19 
                 +l+ La+l  ++g+y++A 
  MMETSP0890-20130614|2430_1  93 TLNSLAVLLKNQGKYDEAM 111
                 799***************7 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0023       1.6       9      33 ..       3      27 ..       2      28 .. 0.91
   2 !   10.8   0.0   0.00058       0.4       3      33 ..      31      69 ..      29      70 .. 0.71
   3 !   18.1   0.0   2.8e-06    0.0019       2      32 ..      72     110 ..      71     111 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0023
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a+++nnLA+ l  + ++ eA+
  MMETSP0890-20130614|2430_1  3 HPDVAQSLNNLAQSLRHQAKYGEAK 27
                6999************999999986 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00058
   PF13431.1  3 ekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                e+al+++     Pn+   a  +n LA ll  +G+++eA+
  MMETSP0890-20130614|2430_1 31 ERALRIHeetlgPNHpdvATTLNILADLLDVQGKYDEAK 69
                55555555555544433399999**************97 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2.8e-06
   PF13431.1   2 yekalel.....dPnn...adaynnLAelllnnGdleeA 32 
                 ye+ale+      Pn+   a  +n LA+ll+n+G+++eA
  MMETSP0890-20130614|2430_1  72 YERALEIvekvhGPNHpevATTLNSLAVLLKNQGKYDEA 110
                 777777765554255544499999*************99 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0094       6.4       2      30 ..       8      36 ..       7      40 .. 0.91
   2 !   19.2   0.0   8.7e-07    0.0006       3      30 ..      51      78 ..      49      80 .. 0.93
   3 !    7.4   0.0    0.0054       3.7       3      21 ..      93     111 ..      91     112 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0094
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                ++++nl++ +r   +y +Ak   e+al +
  MMETSP0890-20130614|2430_1  8 QSLNNLAQSLRHQAKYGEAKPLCERALRI 36
                7899**********************987 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 8.7e-07
                -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                +++ l+d++   G+yd+Ak ++e+ale+
  MMETSP0890-20130614|2430_1 51 TLNILADLLDVQGKYDEAKPFYERALEI 78
                6889**********************97 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0054
                 -TTT---HHHHTT-HHHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAk 21 
                 +++ l+ ++++ G+yd+A+
  MMETSP0890-20130614|2430_1  93 TLNSLAVLLKNQGKYDEAM 111
                 688999************7 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00022      0.15       5      37 ..      11      48 ..       7      55 .. 0.79
   2 !   13.9   0.0   8.7e-05     0.059       4      39 ..      52      92 ..      48      95 .. 0.85
   3 ?    5.2   0.0     0.053        36       4      22 ..      94     112 ..      91     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00022
   PF13428.1  5 lalarallalGdpdeAiallrrala.....laPddaea 37
                  la+ l+++  + eA  l++ral+     l+P+++++
  MMETSP0890-20130614|2430_1 11 NNLAQSLRHQAKYGEAKPLCERALRiheetLGPNHPDV 48
                679*********************95444445666655 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 8.7e-05
   PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaeall 39
                l  la++l  +G +deA   ++ral+     ++P+++e+ +
  MMETSP0890-20130614|2430_1 52 LNILADLLDVQGKYDEAKPFYERALEivekvHGPNHPEVAT 92
                567999*******************9888888899998876 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.053
   PF13428.1   4 llalarallalGdpdeAia 22 
                 l  la +l ++G +deA+ 
  MMETSP0890-20130614|2430_1  94 LNSLAVLLKNQGKYDEAMP 112
                 6679*************86 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.1e-06    0.0021      27      83 ..       9      74 ..       2      75 .. 0.85
   2 !   11.8   0.0   0.00026      0.18       2      45 ..      62     111 ..      62     114 .] 0.72

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.1e-06
                CHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2 27 ylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83
                +l +lA++l ++++y +A  l+++      + l +++++ +    +lA  l  +gkydeA   +e+
  MMETSP0890-20130614|2430_1  9 SLNNLAQSLRHQAKYGEAKPLCERalriheETLGPNHPDVATtlnILADLLDVQGKYDEAKPFYER 74
                56678*****************99*99998888889977777666889************988887 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00026
                 TT-HHHHHHHHHHHCCC-ST....-H.HHHCHHH.HHHHHHH---HHHHH CS
   PF12895.2   2 qhnyknAlflaekllaespk....dp.edaylya.lAlclylngeykrAy 45 
                 q+ y++A  ++e++l+   k    ++ e a  ++ lA  l ++g+y++A+
  MMETSP0890-20130614|2430_1  62 QGKYDEAKPFYERALEIVEKvhgpNHpEVATTLNsLAVLLKNQGKYDEAM 111
                 56788888888888888888777633455555555899999999999997 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0046       3.1      65      81 ..       2      18 ..       1      20 [. 0.93
   2 ?    6.3   0.0     0.016        11      49      81 ..      27      60 ..      18      63 .. 0.72
   3 !    8.9   0.0    0.0026       1.8      45      84 ..      65     105 ..      58     105 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0046
   PF14357.1 65 eHPklagtlrnildsLa 81
                +HP++a+ l+n+++sL 
  MMETSP0890-20130614|2430_1  2 DHPDVAQSLNNLAQSLR 18
                8**************96 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.016
   PF14357.1 49 eslaerlne.averFeaeHPklagtlrnildsLa 81
                ++l er  +   e    +HP++a tl+ ++d L 
  MMETSP0890-20130614|2430_1 27 KPLCERALRiHEETLGPNHPDVATTLNILADLLD 60
                555555555345667779***********99985 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0026
   PF14357.1  45 eaedeslaerlneaverFea.eHPklagtlrnildsLanmG 84 
                  +e +++ er  e+ve+    +HP++a tl++++  L+n G
  MMETSP0890-20130614|2430_1  65 YDEAKPFYERALEIVEKVHGpNHPEVATTLNSLAVLLKNQG 105
                 5666777788888888876438**************99865 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0018       1.2      41      77 ..       8      44 ..       2      50 .. 0.89
   2 !   12.0   0.0   9.8e-05     0.067      41      89 ..      50      98 ..      44     111 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0018
   PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfilervfhps 77
                 +L +l++ +r+q ++ +A  l+eraL i e+ + p+
  MMETSP0890-20130614|2430_1  8 QSLNNLAQSLRHQAKYGEAKPLCERALRIHEETLGPN 44
                6899***********************9999988876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 9.8e-05
   PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnassgk 89
                 tL +l++++  qg++ +A  + eraL i+e+v  p+  ++  + +s  
  MMETSP0890-20130614|2430_1 50 TTLNILADLLDVQGKYDEAKPFYERALEIVEKVHGPNHPEVATTLNSLA 98
                69*******************************9999888776666655 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.49   3.3e+02       2      25 ..       8      31 ..       7      32 .. 0.73
   2 !    8.0   0.0    0.0058         4       5      26 .]      53      74 ..      49      74 .. 0.84
   3 ?    5.5   0.0     0.037        25       6      20 ..      96     110 ..      91     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.49
                HHH---HHHHHH-------HHHHH CS
   PF07721.9  2 rallaLArallalGdldeAralle 25
                + l +LA+ l ++  + eA  l e
  MMETSP0890-20130614|2430_1  8 QSLNNLAQSLRHQAKYGEAKPLCE 31
                567799*99999877777766665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0058
                ---HHHHHH-------HHHHHT CS
   PF07721.9  5 laLArallalGdldeAraller 26
                  LA +l  +G +deA    er
  MMETSP0890-20130614|2430_1 53 NILADLLDVQGKYDEAKPFYER 74
                579*************887775 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.037
                 --HHHHHH------- CS
   PF07721.9   6 aLArallalGdldeA 20 
                  LA +l  +G +deA
  MMETSP0890-20130614|2430_1  96 SLAVLLKNQGKYDEA 110
                 69************9 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.36   2.5e+02       5      28 ..      12      35 ..      10      40 .. 0.85
   2 !    8.0   0.0    0.0056       3.9       6      28 ..      55      77 ..      54      78 .. 0.86
   3 ?    3.7   0.0      0.14        93       6      20 ..      97     111 ..      96     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.36
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la+s++ + ++ eA+ + er ++
  MMETSP0890-20130614|2430_1 12 NLAQSLRHQAKYGEAKPLCERALR 35
                6999*9997799999999888876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0056
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la +++ +g++deA+  +er ++
  MMETSP0890-20130614|2430_1 55 LADLLDVQGKYDEAKPFYERALE 77
                677788899***********986 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAl 20 
                 la +++++g++deA+
  MMETSP0890-20130614|2430_1  97 LAVLLKNQGKYDEAM 111
                 78899999*****96 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.4   1.6e+03       3      17 ..      24      38 ..      22      45 .. 0.77
   2 ?   10.3   0.0   0.00064      0.44      16      38 ..      60      82 ..      49      97 .. 0.89
   3 ?    0.5   0.0      0.71   4.9e+02      10      25 ..      96     111 ..      89     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.4
                HHHHHHHHHHHHHHH CS
  PF04212.13  3 skAlelikkAveaDe 17
                 +A++l  +A+++ e
  MMETSP0890-20130614|2430_1 24 GEAKPLCERALRIHE 38
                578888888888755 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00064
                HHTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 16 DeagkyeeAlelYkeAlelLlqa 38
                D +gky+eA   Y+ Ale+ +++
  MMETSP0890-20130614|2430_1 60 DVQGKYDEAKPFYERALEIVEKV 82
                889***************98775 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.71
                 HHHHHHHHTT-HHHHH CS
  PF04212.13  10 kkAveaDeagkyeeAl 25 
                 + Av   ++gky+eA 
  MMETSP0890-20130614|2430_1  96 SLAVLLKNQGKYDEAM 111
                 567777789*****96 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.2   8.3e+02      44      65 ..      13      34 ..       5      58 .. 0.59
   2 ?   11.9   0.0   0.00022      0.15      10      59 ..      58     112 ..      49     114 .] 0.72

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.2
   PF12688.2 44 laSsLRnlGrveeslalleael 65
                la sLR   +  e+  l e++l
  MMETSP0890-20130614|2430_1 13 LAQSLRHQAKYGEAKPLCERAL 34
                4455555444444444444443 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00022
   PF12688.2  10 arDstGeeakAvplYrrAla..aGLagarrrr...atiqlaSsLRnlGrveesla 59 
                   D+ G+ ++A p Y+rAl+  + ++g +++    +   la  L+n G+ +e++ 
  MMETSP0890-20130614|2430_1  58 LLDVQGKYDEAKPFYERALEivEKVHGPNHPEvatTLNSLAVLLKNQGKYDEAMP 112
                 6799***************855445555554400044456778999999999876 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00065      0.44      75     109 ..       4      38 ..       2      41 .. 0.92
   2 ?    0.2   0.0       0.7   4.8e+02      12      19 ..      72      79 ..      44      85 .. 0.50
   3 ?    0.1   0.0      0.76   5.2e+02      14      22 ..      74      82 ..      60     110 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00065
   PF04781.7  75 slaAlsLfelakelgsvkyYkkavkkakeaLsvts 109
                 ++ A+sL +la+ l+ +  Y +a   + +aL + +
  MMETSP0890-20130614|2430_1   4 PDVAQSLNNLAQSLRHQAKYGEAKPLCERALRIHE 38 
                 789****************************9865 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.7
   PF04781.7 12 yikALeli 19
                y  ALe++
  MMETSP0890-20130614|2430_1 72 YERALEIV 79
                22344444 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.76
   PF04781.7 14 kALeliedl 22
                 ALe++e++
  MMETSP0890-20130614|2430_1 74 RALEIVEKV 82
                577777775 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0026       1.8     141     170 ..      45      75 ..       2      84 .. 0.66
   2 ?    3.3   0.0     0.087        59     144     163 ..      91     110 ..      73     113 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0026
   PF11846.3 141 kP.rpavirrlalalallGkeeeArdamaea 170
                  P  +++++ la +l ++Gk +eA+   ++a
  MMETSP0890-20130614|2430_1  45 HPdVATTLNILADLLDVQGKYDEAKPFYERA 75 
                 44345677888*************8777665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.087
   PF11846.3 144 pavirrlalalallGkeeeA 163
                 +++++ la++l  +Gk +eA
  MMETSP0890-20130614|2430_1  91 ATTLNSLAVLLKNQGKYDEA 110
                 4677889***********99 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.064        43      14      26 ..      62      72 ..      61      80 .. 0.83
   2 ?    6.0   0.0     0.014       9.4       7      21 ..      97     111 ..      94     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.064
                TT-HHHHHHH..H CS
   PF07720.7 14 kkkyqeArelfsY 26
                ++ky+eA  +  Y
  MMETSP0890-20130614|2430_1 62 QGKYDEAKPF--Y 72
                8******887..5 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.014
                 HHHHHHHTT-HHHHH CS
   PF07720.7   7 lAaefynkkkyqeAr 21 
                 lA  + n++ky+eA 
  MMETSP0890-20130614|2430_1  97 LAVLLKNQGKYDEAM 111
                 6666669******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.81
# Mc/sec: 337.27
//
Query:       MMETSP0890-20130614|2425_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-19   67.4   7.2    1.7e-11   43.4   0.2    2.8  4  PF13414.1  TPR repeat
    3.3e-12   45.9   0.2    3.3e-12   45.9   0.1    2.4  2  PF01920.15 Prefoldin subunit
    6.4e-12   44.4   1.1    0.00051   19.4   0.1    3.7  3  PF00515.23 Tetratricopeptide repeat
    1.6e-11   43.0   2.2     0.0029   17.2   0.0    3.6  3  PF07719.12 Tetratricopeptide repeat
    7.8e-08   32.6   3.7      3e-05   24.4   0.3    2.9  3  PF13432.1  Tetratricopeptide repeat
    2.2e-07   30.4   0.6      0.091   12.8   0.0    4.0  4  PF13431.1  Tetratricopeptide repeat
     0.0001   22.4   8.2     0.0076   16.6   0.1    4.1  4  PF13428.1  Tetratricopeptide repeat
    0.00046   19.6   0.4       0.17   11.5   0.0    3.1  2  PF13181.1  Tetratricopeptide repeat
      0.002   17.9   0.8     0.0071   16.1   0.2    2.2  1  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   14.3   0.0       0.07   12.2   0.1    2.0  2  PF10516.4  SHNi-TPR
      0.031   13.9   1.8        6.5    6.7   0.2    3.4  3  PF13176.1  Tetratricopeptide repeat
       0.15   10.8   5.4       0.22   10.2   3.7    1.2  1  PF01793.11 Glycolipid 2-alpha-mannosyltransferase
       0.26   11.7   3.1        8.7    6.8   0.1    2.3  2  PF03228.9  Adenoviral core protein VII
        4.2    7.5  13.6       0.73    9.9   5.7    2.3  2  PF13864.1  Calmodulin-binding


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.2   1.7e-14   1.7e-11      17      69 .]       2      53 ..       1      53 [. 0.97
   2 !   30.9   0.2   1.4e-10   1.4e-07      15      68 ..      34      86 ..      32      87 .. 0.92
   3 !    9.9   0.1    0.0005      0.49       6      39 ..      59      92 ..      54      96 .. 0.86
   4 ?   -2.3   0.0       3.1   3.1e+03      33      58 ..     180     202 ..     175     210 .. 0.68

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.7e-14
   PF13414.1 17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                g+y eA  +y++Al l+p+n  l++n++la+    k++++A++d++++l++dP
  MMETSP0890-20130614|2425_1  2 GKYVEAAGKYTEALGLEPKNHLLLSNRSLALSSA-KKFDQAIADARECLRIDP 53
                89*******************************7.58***************9 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 1.4e-10
   PF13414.1 15 kegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68
                +++++d+Ai+  +++l++dp+  + yy+lA a l lg   eeAl+  ++ le d
  MMETSP0890-20130614|2425_1 34 SAKKFDQAIADARECLRIDPEFVKGYYRLANAQLGLG-LIEEALATTRRGLEKD 86
                579**********************************.9*****9988888765 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0005
   PF13414.1  6 lkelGnalfkegdydeAieayekAleldpnnael 39
                +++l+na + +g  +eA++  +++le d+nn el
  MMETSP0890-20130614|2425_1 59 YYRLANAQLGLGLIEEALATTRRGLEKDENNSEL 92
                8899999999999999999999999999999875 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 3.1
   PF13414.1  33 dpnnaelyynlAlaylklgkdyeeAl 58 
                  p+   l+  +++++lk+ +  + A+
  MMETSP0890-20130614|2425_1 180 LPDETPLFRSIGKIFLKN-D--KPAI 202
                 566667788888888883.3..3455 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.2      0.85   8.3e+02      74      97 ..      88     111 ..      66     119 .. 0.56
   2 !   45.9   0.1   3.4e-15   3.3e-12       5     103 ..     143     242 ..     139     245 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  74 lekeiktlekqleklekeleelke 97 
                  + e+k+l +q+++++    + ++
  MMETSP0890-20130614|2425_1  88 NNSELKKLLRQIKQKRDISRKSEK 111
                 334455555555555544444444 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 3.4e-15
                 --HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- CS
  PF01920.15   5 nkfqqlq.qqlqklaqqikqletqlkeielvleelelldedtkvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelykkl 103
                 ++  + +  +  ++ +  +  +++  +++l+  e+  l+++t+ +++iG++++k+dk+ + + Le +k ++e+++++l+ +   l++e++  ++el + +
  MMETSP0890-20130614|2425_1 143 AQTLNAHeREYNNVSARAQLCRRENVRAQLTTSEIAALPDETPLFRSIGKIFLKNDKPAIMALLESQKHSAEQRLNALQARGAFLQREISAKQQELESGF 242
                 44444440455556666666689999*********************************************************************98765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.021        21      15      34 .]       2      21 ..       1      21 [. 0.93
   2 !   17.1   0.0   2.8e-06    0.0027       9      34 .]      30      55 ..      23      55 .. 0.89
   3 !   19.4   0.1   5.2e-07   0.00051       2      34 .]      57      89 ..      56      89 .. 0.96

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.021
                T-HHHHHHHHHHHHHHHTTH CS
  PF00515.23 15 gkydeAleyyekALelnPnn 34
                gky eA   y +AL l+P+n
  MMETSP0890-20130614|2425_1  2 GKYVEAAGKYTEALGLEPKN 21
                899999999*********97 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.8e-06
                HHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  9 naylklgkydeAleyyekALelnPnn 34
                +a+ + +k+d+A+++ +++L+++P++
  MMETSP0890-20130614|2425_1 30 LALSSAKKFDQAIADARECLRIDPEF 55
                688999******************86 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 5.2e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnPnn 34
                k +y+l+na+l lg  +eAl+  ++ Le ++nn
  MMETSP0890-20130614|2425_1 57 KGYYRLANAQLGLGLIEEALATTRRGLEKDENN 89
                79****************************998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0025       2.4      15      34 .]       2      21 ..       1      21 [. 0.95
   2 !   17.2   0.0     3e-06    0.0029       3      33 ..      24      54 ..      22      55 .. 0.94
   3 !   15.7   0.1   9.3e-06    0.0091       2      34 .]      57      89 ..      56      89 .. 0.96

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0025
                T-HHHHHHHHHHHHHH-TTS CS
  PF07719.12 15 gdyeeAleafekAleldPnn 34
                g+y eA+  + +Al l+P+n
  MMETSP0890-20130614|2425_1  2 GKYVEAAGKYTEALGLEPKN 21
                99****************97 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 3e-06
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPn 33
                +l n+ la+  ++++++A+++ +++l++dP+
  MMETSP0890-20130614|2425_1 24 LLSNRSLALSSAKKFDQAIADARECLRIDPE 54
                6899**************************7 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 9.3e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                +++y+l++a + lg  eeAl+  ++ le d nn
  MMETSP0890-20130614|2425_1 57 KGYYRLANAQLGLGLIEEALATTRRGLEKDENN 89
                68****************************997 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   9.7e-06    0.0095      11      62 ..       2      53 ..       1      53 [. 0.96
   2 !   24.4   0.3   3.1e-08     3e-05       5      63 ..      30      88 ..      26      90 .. 0.91
   3 ?   -2.6   0.0       9.2     9e+03      18      24 ..     215     221 ..     199     231 .. 0.59

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 9.7e-06
   PF13432.1 11 GdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62
                G+y eA+  + +al l+P++   l ++  al  ++++d+A+a  r+ l+++P
  MMETSP0890-20130614|2425_1  2 GKYVEAAGKYTEALGLEPKNHLLLSNRSLALSSAKKFDQAIADARECLRIDP 53
                8999*************************************99999999888 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 3.1e-08
   PF13432.1  5 rallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63
                +al  a+++d+A+a  ++ l+ +Pe +  +++la a l lg  +eA+a  r+ l+ + +
  MMETSP0890-20130614|2425_1 30 LALSSAKKFDQAIADARECLRIDPEFVKGYYRLANAQLGLGLIEEALATTRRGLEKDEN 88
                678899******************************************99998877665 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 9.2
   PF13432.1  18 aaleaal 24 
                 + l+a+ 
  MMETSP0890-20130614|2425_1 215 QRLNALQ 221
                 3333333 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1    0.0002       0.2       2      34 .]      11      43 ..      10      43 .. 0.96
   2 !   12.8   0.0   9.3e-05     0.091       3      33 ..      46      76 ..      45      77 .. 0.91
   3 ?    0.4   0.0      0.93   9.1e+02       3      14 ..      80      91 ..      79      92 .. 0.87
   4 ?   -1.4   0.0       3.6   3.5e+03      10      29 ..     181     200 ..     177     205 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0002
   PF13431.1  2 yekaleldPnnadaynnLAelllnnGdleeAeq 34
                y +al l+P+n+ ++ n+ ++l++++++++A++
  MMETSP0890-20130614|2425_1 11 YTEALGLEPKNHLLLSNRSLALSSAKKFDQAIA 43
                99*****************************85 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 9.3e-05
   PF13431.1  3 ekaleldPnnadaynnLAelllnnGdleeAe 33
                +++l++dP+ +  y++LA++ l +G  eeA+
  MMETSP0890-20130614|2425_1 46 RECLRIDPEFVKGYYRLANAQLGLGLIEEAL 76
                68********************999888886 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.93
   PF13431.1  3 ekaleldPnnad 14
                ++ le+d nn++
  MMETSP0890-20130614|2425_1 80 RRGLEKDENNSE 91
                589*******97 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 3.6
   PF13431.1  10 PnnadaynnLAelllnnGdl 29 
                 P+ +++++  ++++l+n ++
  MMETSP0890-20130614|2425_1 181 PDETPLFRSIGKIFLKNDKP 200
                 77778889999999999876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.1     1e+03      15      38 ..       2      25 ..       1      33 [. 0.81
   2 !   11.6   0.1   0.00031      0.31       5      42 ..      26      63 ..      22      64 .. 0.90
   3 !   16.6   0.1   7.8e-06    0.0076       3      41 ..      58      96 ..      56      99 .. 0.92
   4 ?   -0.7   0.0         3   2.9e+03      12      33 ..     134     155 ..     132     164 .. 0.66

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 1.1
   PF13428.1 15 GdpdeAiallrralalaPddaeal 38
                G + eA+  + +al l P++  +l
  MMETSP0890-20130614|2425_1  2 GKYVEAAGKYTEALGLEPKNHLLL 25
                778899999999999999987665 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00031
   PF13428.1  5 lalarallalGdpdeAiallrralalaPddaealllLa 42
                  +  al  +  +d+Aia +r+ l+ +P+    +++La
  MMETSP0890-20130614|2425_1 26 SNRSLALSSAKKFDQAIADARECLRIDPEFVKGYYRLA 63
                567789999*********************99999998 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 7.8e-06
   PF13428.1  3 allalarallalGdpdeAiallrralalaPddaealllL 41
                 +++la+a+l lG  +eA+a  rr l+++ ++ e+ +lL
  MMETSP0890-20130614|2425_1 58 GYYRLANAQLGLGLIEEALATTRRGLEKDENNSELKKLL 96
                699*******************************99887 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 3
   PF13428.1  12 lalGdpdeAiallrralalaPd 33 
                 + + ++de ++ l++  + + +
  MMETSP0890-20130614|2425_1 134 EKQKELDEIAQTLNAHEREYNN 155
                 6678899999999987666655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00018      0.17       4      32 ..      25      53 ..      22      55 .. 0.91
   2 ?    4.8   0.1     0.025        24       2      23 ..      57      78 ..      56      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00018
                TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                + n+++++ + +++d+A++  +++l ++p
  MMETSP0890-20130614|2425_1 25 LSNRSLALSSAKKFDQAIADARECLRIDP 53
                55999**********************99 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.025
                --TTT---HHHHTT-HHHHHHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkey 23
                k yy+l+ + + lG +++A++ 
  MMETSP0890-20130614|2425_1 57 KGYYRLANAQLGLGLIEEALAT 78
                67*****************986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   7.3e-06    0.0071       7      74 ..      24      84 ..      19      88 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.3e-06
   PF13424.1  7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74
                +l+n  l+l   +++d+A++  +++l +       +p+ ++ ++ lan++l lg  +eAl+  ++ le
  MMETSP0890-20130614|2425_1 24 LLSNRSLALSSAKKFDQAIADARECLRI-------DPEFVKGYYRLANAQLGLGLIEEALATTRRGLE 84
                57899999999***************98.......6999**********************9999887 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2     2e+03      16      30 ..       3      17 ..       2      18 .. 0.71
   2 ?   12.2   0.1   7.1e-05      0.07      16      30 ..      37      51 ..      34      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2
   PF10516.4 16 nFpqAveDlrkaLeL 30
                ++ +A+  +++aL L
  MMETSP0890-20130614|2425_1  3 KYVEAAGKYTEALGL 17
                566777778888866 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 7.1e-05
   PF10516.4 16 nFpqAveDlrkaLeL 30
                +F+qA+ D r++L +
  MMETSP0890-20130614|2425_1 37 KFDQAIADARECLRI 51
                8************76 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.038        37      13      29 ..       2      18 ..       1      23 [. 0.84
   2 ?   -0.8   0.0       1.6   1.6e+03       8      21 ..      31      44 ..      24      55 .. 0.67
   3 ?    6.7   0.2    0.0066       6.5       2      35 ..      59      90 ..      58      91 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.038
   PF13176.1 13 gdyekAielyeraLalt 29
                g+y +A+  y++aL+l+
  MMETSP0890-20130614|2425_1  2 GKYVEAAGKYTEALGLE 18
                899*********87776 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.6
   PF13176.1  8 lysrlgdyekAiel 21
                + s+  ++++Ai  
  MMETSP0890-20130614|2425_1 31 ALSSAKKFDQAIAD 44
                56677789999865 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0066
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdplda 35
                +++La+++  lg  e+A+   +r  +l+kd+++ 
  MMETSP0890-20130614|2425_1 59 YYRLANAQLGLGLIEEALATTRR--GLEKDENNS 90
                789********************..****99986 PP

>> PF01793.11  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.7   0.00023      0.22      18      87 ..      84     155 ..      71     157 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00023
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------..----EEEEEE--GGG----HHHHHHHHHHTTT CS
  PF01793.11  18 keeeeeekekekkeklkekkekevkektkeakkeaeek..krenatlvvLvrnseleevlksirsledrFNk 87 
                 +++e++++ k+  +++k+k++ + k++++++kk++++   ++ n  + +L +++el+e++++++  e+++N+
  MMETSP0890-20130614|2425_1  84 EKDENNSELKKLLRQIKQKRDISRKSEKDNEKKDNRNIpsRKGNKNMPSLEKQKELDEIAQTLNAHEREYNN 155
                 3333444444445555555555554444444444333355899****************************7 PP

>> PF03228.9  Adenoviral core protein VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0089       8.7      24      95 ..      45     119 ..      38     130 .. 0.66
   2 ?    4.3   1.4     0.052        50      64     108 ..     128     171 ..     115     180 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0089
   PF03228.9  24 akkrseqhPVrVrshyRasWGslk...grtaveklreklkkderkykeaavastvdevadsvkakaraarrrrrr 95 
                 a++    +P  V+++yR +  +l       a++++r+ l kde++ + ++  +++++  d  +++++  +++ +r
  MMETSP0890-20130614|2425_1  45 ARECLRIDPEFVKGYYRLANAQLGlglIEEALATTRRGLEKDENNSELKKLLRQIKQKRDISRKSEKDNEKKDNR 119
                 55666667899******9888887755455666778888888888887777777776666655555544444443 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.052
   PF03228.9  64 rkykeaavastvdevadsvkakaraarrrrrrlrrvarrraarks 108
                 ++  + +++++ de+a++ +a++r++++   r++   rr+++r++
  MMETSP0890-20130614|2425_1 128 KNMPSLEKQKELDEIAQTLNAHEREYNNVSARAQ-LCRRENVRAQ 171
                 4555667889999***************999999.5555555443 PP

>> PF13864.1  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.7   0.00074      0.73       9      79 ..     100     172 ..      92     184 .. 0.80
   2 ?   -0.5   0.1       1.4   1.3e+03      50      66 ..     207     223 ..     195     248 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00074
   PF13864.1   9 krkeeiaeekeeleaqeeeqe..apkgvrllseeErlellegLkkkweelnkelqklplvldtlskkrrkeel 79 
                 k k++i++++e+ ++++++++   +kg + ++  E+++ l+++ +  +  ++e+++++ +++  + ++ +++l
  MMETSP0890-20130614|2425_1 100 KQKRDISRKSEKDNEKKDNRNipSRKGNKNMPSLEKQKELDEIAQTLNAHEREYNNVSARAQLCRRENVRAQL 172
                 4566777776655555455556677*********************************999988887777665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.4
   PF13864.1  50 kkkweelnkelqklplv 66 
                 ++++ + +++l+ l  +
  MMETSP0890-20130614|2425_1 207 ESQKHSAEQRLNALQAR 223
                 44444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1604  (0.11732); expected 273.4 (0.02)
Passed bias filter:                      612  (0.044763); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.73u 0.44s 00:00:01.17 Elapsed: 00:00:00.90
# Mc/sec: 684.29
//
Query:       MMETSP0890-20130614|2438_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-20   70.8   4.8    1.8e-09   37.0   0.1    2.7  3  PF00400.27 WD domain, G-beta repeat
    2.1e-06   26.1   0.6    0.00051   18.2   0.1    2.1  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.06   12.6   0.1       0.41    9.9   0.1    1.8  2  PF13360.1  PQQ-like domain
        0.1   11.2   0.0       0.11   11.1   0.0    1.1  1  PF08801.6  Nup133 N terminal like
       0.12   11.1   0.0       0.12   11.1   0.0    1.1  1  PF03435.13 Saccharopine dehydrogenase


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   6.4e-13   1.8e-09      10      39 .]      16      45 ..       8      45 .. 0.93
   2 !   35.3   0.2   2.2e-12     6e-09       1      39 []      49      88 ..      49      88 .. 0.97
   3 ?   -1.3   0.0      0.76   2.1e+03      15      22 ..     105     112 ..     101     113 .] 0.79

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 6.4e-13
                SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 10 HtspVtcvafspdgpllasgSrDgtirlWd 39
                H+++V+ +afs d +l+++++ D+t+r+Wd
  MMETSP0890-20130614|2438_1 16 HEDSVYNCAFSFDDKLIVTACQDKTVRIWD 45
                89***************************9 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.2e-12
                TEEEEEEESSSSSEEEEEEESSSTEEEEEE.TTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgS.rDgtirlWd 39
                g++k+tl+gH++ V+  +fs dg++++s+S +D+t r+Wd
  MMETSP0890-20130614|2438_1 49 GQLKHTLDGHSAYVRYSCFSGDGNRVVSASyHDKTARIWD 88
                689************************************9 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.76
                 EEEEEESS CS
  PF00400.27  15 tcvafspd 22 
                 ++++f p+
  MMETSP0890-20130614|2438_1 105 NSCDFTPH 112
                 89999996 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.9e-07   0.00051     220     260 ..      22      58 ..       3      68 .. 0.81
   2 !    6.9   0.0   0.00049       1.3     225     253 ..      66      94 ..      59     105 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.9e-07
   PF11715.3 220 sldvsssevegqtfvftlsrDgkLRvWnletgqclrttdil 260
                 + ++s+    ++ +++t ++D+++R+W++  gq+  t d  
  MMETSP0890-20130614|2438_1  22 NCAFSF----DDKLIVTACQDKTVRIWDTQSGQLKHTLDGH 58 
                 566777....889999*****************97777765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00049
   PF11715.3 225 ssevegqtfvftlsrDgkLRvWnletgqc 253
                 +   +g+ +v + + D++ R+W+ +tg  
  MMETSP0890-20130614|2438_1  66 CFSGDGNRVVSASYHDKTARIWDANTGEM 94 
                 556689999*****************976 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00015      0.41      32      97 ..      24      93 ..       1      97 [. 0.42
   2 ?    4.1   0.0     0.009        25      34      65 ..      69     101 ..      65     107 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
   PF13360.1 32 avldggtlfva.sakgrlvaldaatGkvlWsksl.egeiegap.lvaggrvvvvt.adnslvaldaetGk 97
                a+  +++l+v+   + ++  +d+++G+++ + +  ++ ++ +    +g+rvv ++  d++ +  da+tG+
  MMETSP0890-20130614|2438_1 24 AFSFDDKLIVTaCQDKTVRIWDTQSGQLKHTLDGhSAYVRYSCfSGDGNRVVSASyHDKTARIWDANTGE 93
                2223333333313444555555555555555554444444443355555555554444455555555555 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.009
   PF13360.1  34 ldggtlfvas.akgrlvaldaatGkvlWsksle 65 
                 +dg+++++as  + +   +da+tG+ l ++ ++
  MMETSP0890-20130614|2438_1  69 GDGNRVVSASyHDKTARIWDANTGEMLSEFLFN 101
                 478888888646777788899999888777665 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.11     201     238 ..      27      64 ..       5      91 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4e-05
   PF08801.6 201 r..rilytlsskgtirvwdlspsgeslksevdirenllti 238
                    ++++t+  ++t+r+wd+++++ +++   d +++ +++
  MMETSP0890-20130614|2438_1  27 FddKLIVTACQDKTVRIWDTQSGQLKHTL--DGHSAYVRY 64 
                 1559****************977776665..555554444 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.5e-05      0.12      61      99 ..      10      48 ..       4      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.5e-05
  PF03435.13 61 LeallkegdlvvnlappilsltvlkaCietgvhyvdtsy 99
                L + l++ d v n+a  + +  ++ aC ++ v+  dt+ 
  MMETSP0890-20130614|2438_1 10 LIKTLRHEDSVYNCAFSFDDKLIVTACQDKTVRIWDTQS 48
                788999******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 429.82
//
Query:       MMETSP0890-20130614|2445_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   53.4   0.2    2.4e-06   27.1   0.0    2.0  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.072   11.1   0.0      0.072   11.1   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.8e-09   1.3e-05      18      39 .]       2      23 ..       2      23 .. 0.97
   2 !   27.1   0.0   3.4e-10   2.4e-06       1      28 [.      27      54 ..      27      55 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.8e-09
                EEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 18 afspdgpllasgSrDgtirlWd 39
                +fs dg +++++S+Dgt ++Wd
  MMETSP0890-20130614|2445_1  2 KFSKDGGRVVTASEDGTAKIWD 23
                69*******************9 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 3.4e-10
                TEEEEEEESSSSSEEEEEEESSSTEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllas 28
                g+++ tlrgHt+ V +++fspdg+++++
  MMETSP0890-20130614|2445_1 27 GTLLLTLRGHTDYVLACDFSPDGTRVVT 54
                57889********************998 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05     0.072     234     257 ..      10      33 ..       3      54 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
   PF11715.3 234 vftlsrDgkLRvWnletgqclrtt 257
                 v+t s Dg+ ++W+  tg++l t 
  MMETSP0890-20130614|2445_1  10 VVTASEDGTAKIWDAVTGTLLLTL 33 
                 78*****************95554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.42s 00:00:00.69 Elapsed: 00:00:00.59
# Mc/sec: 227.45
//
Query:       MMETSP0890-20130614|2446_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.2   2.8      0.021   14.7   1.9    1.3  1  PF04306.8 Protein of unknown function (DUF456)


Domain annotation for each model (and alignments):
>> PF04306.8  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.9   1.6e-06     0.021      39     119 ..       5      86 ..       1      96 [. 0.64

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-06
   PF04306.8  39 lallglvadflagalgakragaskrgllgaaiglivG..lfvlpplGlllgpflgallgEllrrkdlrralraglgalvGfll 119
                 ++ + +v+d  ++a++  +a  + + + +aa ++++G  +f++p+lG +  +++ga ++  + ++d ++a  a+ ++  ++++
  MMETSP0890-20130614|2446_1   5 VMCANVVLDRELEAIRKDEASEQSKRIRVAAGAGLIGasCFFVPVLGGITLAAAGAAAAAAMTTRD-DEAGAAARASGAAVAS 86 
                 566667777777777666666666666677777777734688889999999999988888877776.4444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.73
# Mc/sec: 797.69
//
Query:       MMETSP0890-20130614|2448_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-17   61.3   0.4    7.9e-11   41.2   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.11   12.0   0.0        6.8    6.3   0.0    2.2  2  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   1.2e-14   7.9e-11       5      39 .]      10      44 ..       7      44 .. 0.96
   2 !   18.5   0.0   1.8e-07    0.0012       1      28 [.      48      75 ..      48      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.2e-14
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH+s+V+++a+s+dg  l+s+S D+t++lWd
  MMETSP0890-20130614|2448_1 10 RELVGHESAVYSIAYSQDGITLVSASFDRTCCLWD 44
                6799******************************9 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.8e-07
                TEEEEEEESSSSSEEEEEEESSSTEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllas 28
                g++++++rg t+++ cv fspdg  +a+
  MMETSP0890-20130614|2448_1 48 GTQLRIFRGATASIDCVVFSPDGYTFAT 75
                57899*********************98 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.006        41      13      24 ..      21      32 ..      15      36 .. 0.88
   2 ?    6.3   0.0   0.00099       6.8      10      23 ..      60      73 ..      44      74 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.006
                EEEE-----EEE CS
   PF07676.7 13 ePawSPDGkkiv 24
                ++a+S DG ++v
  MMETSP0890-20130614|2448_1 21 SIAYSQDGITLV 32
                679*******98 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00099
                -EEEEEE-----EE CS
   PF07676.7 10 kngePawSPDGkki 23
                   + ++SPDG ++
  MMETSP0890-20130614|2448_1 60 SIDCVVFSPDGYTF 73
                667789*****776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 263.95
//
Query:       MMETSP0890-20130614|2454_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   56.4   2.1    1.2e-09   37.5   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.17   11.4   0.0    1.6  2  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   9.9e-08   0.00067      23      39 .]       1      17 [.       1      17 [. 0.93
   2 !   37.5   0.1   1.8e-13   1.2e-09       2      34 ..      22      54 ..      21      56 .] 0.92

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9.9e-08
                STEEEEEETTSEEEEEE CS
  PF00400.27 23 gpllasgSrDgtirlWd 39
                g++++++S+D+t ++Wd
  MMETSP0890-20130614|2454_1  1 GRRVVTASDDNTAKIWD 17
                6789************9 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 1.8e-13
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgt 34
                 ++ +l+gHt++V ++afspdg++++++S D t
  MMETSP0890-20130614|2454_1 22 SLLFSLSGHTNWVMACAFSPDGTRVVTASFDET 54
                56889**************************77 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.76   5.2e+03      17      19 ..       8      10 ..       2      16 .. 0.52
   2 ?   11.4   0.0   2.6e-05      0.17      12      24 ..      35      47 ..      22      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.76
                --- CS
   PF07676.7 17 SPD 19
                S+D
  MMETSP0890-20130614|2454_1  8 SDD 10
                233 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.6e-05
                EEEEE-----EEE CS
   PF07676.7 12 gePawSPDGkkiv 24
                ++ a+SPDG++ v
  MMETSP0890-20130614|2454_1 35 MACAFSPDGTRVV 47
                678*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.43s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 209.68
//
Query:       MMETSP0890-20130614|2449_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-29  101.2   0.0    7.9e-29  100.8   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   5.8e-33   7.9e-29       8     155 ..      39     207 ..      34     208 .. 0.79

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 5.8e-33
                 XXXXXXXXXXXXX.---...............-TTTTT--------TTT------------------S--TT--.STT--.......-.--...--S-TT.THHHH---HHHHHHHHTT----------------------.--.-----------STTT----TTTTT------- CS
  PF00504.16   8 slpgdlgfDplglskdp...............tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeag.......g.ls...lptllalqillligflelareqelkapesegsekraypGglgfdplg.la.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  +p+d+gfDplgl+k                  +k +r aEl HGR+AMla+l++ ++ell   s a ++ e + ++e+g       g l+   +p ++ l   ++i++l l r  ++k+ ++    ++  pG+ gfdpl+ l+  ++ + ++ + kEi+nGRlAM+a++++v+q+
  MMETSP0890-20130614|2449_1  39 RMPADYGFDPLGLAKVDlnlesarnknreadvIVKDYRDAELRHGRLAMLAALAWPMQELLSP-SLARGVGEKLLLTEDGrspsilnGgLQqgpIPFAV-LGTAFAIAALDL-RALKIKEVSG----SDWEPGDYGFDPLNiLKgASPLQIKDFQAKEINNGRLAMLAITAYVIQE 207
                 59************76679999*********99**************************9965.55555555555777775555443132234344444.477888888888.4555555433....4689*********956699*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|2470_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.74
# Mc/sec: 210.49
//
Query:       MMETSP0890-20130614|2472_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-20   70.5   0.0    1.2e-19   70.2   0.0    1.2  1  PF13306.1 Leucine rich repeats (6 copies)
    2.3e-05   23.9   0.0    0.00013   21.5   0.0    2.1  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   1.7e-23   1.2e-19      13      93 ..       2      82 ..       1      96 [. 0.88

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 1.7e-23
   PF13306.1 13 nltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslt 93
                +lt++t+p  +t+Ig +aF++c+sl+++tlp  lt ig+ aF +c sl+++t+p+ lt i  +aF +c +  +i i s+ +
  MMETSP0890-20130614|2472_1  2 SLTQLTLPVGLTTIGGSAFCGCTSLTHLTLPAGLTRIGNDAFHGCISLNQVTLPEGLTDICIYAFDGCPNDLTIAITSTDE 82
                7999****************************************************************9988888755443 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.9e-08   0.00013       2      56 ..       2      54 ..       1      56 [. 0.91
   2 ?   -0.4   0.0      0.13   8.8e+02      13      26 ..      58      71 ..      54      87 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.9e-08
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                +L+ L L    l++i+ +aF g+++L++L L    l++i  +af+g+ sL ++ L
  MMETSP0890-20130614|2472_1  2 SLTQLTLPVG-LTTIGGSAFCGCTSLTHLTLP-AGLTRIGNDAFHGCISLNQVTL 54
                5777777777.9********************.*****************99877 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.13
   PF13855.1 13 lkvipdgaFkglsn 26
                l++i+  aF g++n
  MMETSP0890-20130614|2472_1 58 LTDICIYAFDGCPN 71
                66677777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 458.13
//
Query:       MMETSP0890-20130614|2474_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-13   49.5   0.0    1.9e-10   40.1   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.2e-10   41.0   0.0    1.3e-10   40.9   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    1.6e-08   33.6   0.4    2.1e-08   33.2   0.2    1.2  1  PF00515.23 Tetratricopeptide repeat
    3.9e-07   29.3   0.2      5e-07   29.0   0.1    1.2  1  PF07719.12 Tetratricopeptide repeat
    3.2e-06   26.5   0.0    4.2e-06   26.1   0.0    1.2  1  PF13414.1  TPR repeat
    4.4e-06   26.3   0.7    0.00022   21.0   0.1    2.1  2  PF13431.1  Tetratricopeptide repeat
    5.9e-05   22.4   0.1    7.5e-05   22.1   0.1    1.1  1  PF13181.1  Tetratricopeptide repeat
    0.00012   21.5   0.0    0.00015   21.2   0.0    1.2  1  PF13176.1  Tetratricopeptide repeat
     0.0014   19.1   0.0     0.0015   19.0   0.0    1.1  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.017   15.6   0.0    1.2  1  PF13428.1  Tetratricopeptide repeat
      0.013   15.7   0.0       0.02   15.2   0.0    1.3  1  PF13174.1  Tetratricopeptide repeat
      0.048   13.6   0.0      0.061   13.3   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.057   13.1   0.0       0.07   12.8   0.0    1.1  1  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0027       2.9      31      42 .]       2      13 ..       1      13 [. 0.84
   2 !   40.1   0.0   1.8e-13   1.9e-10       3      38 ..      16      51 .]      15      51 .] 0.96

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0027
   PF13374.1 31 irrrllGddHPd 42
                i ++ lG++HP+
  MMETSP0890-20130614|2474_1  2 IGEKTLGPNHPN 13
                66899******5 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 1.8e-13
   PF13374.1  3 aalnnLAlalrargryeeAlaleeealairrrllGd 38
                  ln LAl+l ++g+y+eA +++e+a +i+++++G+
  MMETSP0890-20130614|2474_1 16 IWLNGLALLLKNQGKYDEAKPFYERAIEIWEKVHGP 51
                579********************************7 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.2e-13   1.3e-10      34      78 .]       2      47 ..       1      47 [. 0.94

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1.2e-13
   PF13424.1 34 l.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                +  ++lg++hp+ a  ln la l+  +g+ydeA++++e+A+ei ek
  MMETSP0890-20130614|2474_1  2 IgEKTLGPNHPNHAIWLNGLALLLKNQGKYDEAKPFYERAIEIWEK 47
                66789*************************************9876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.2     2e-11   2.1e-08       3      31 ..      17      45 ..      15      47 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2e-11
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALeln 31
                 l++l++++ ++gkydeA  +ye+A+e+ 
  MMETSP0890-20130614|2474_1 17 WLNGLALLLKNQGKYDEAKPFYERAIEIW 45
                689************************95 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   4.8e-10     5e-07       1      30 [.      15      44 ..      15      44 .. 0.96

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 4.8e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a +l+ l+l++ ++g+y+eA+ ++e+A+e+
  MMETSP0890-20130614|2474_1 15 AIWLNGLALLLKNQGKYDEAKPFYERAIEI 44
                689*************************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     4e-09   4.2e-06      34      67 ..      12      44 ..       5      47 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 4e-09
   PF13414.1 34 pnnaelyynlAlaylklgkdyeeAledyekAlel 67
                pn+a+ +++lAl++ ++g +y+eA   ye+A+e+
  MMETSP0890-20130614|2474_1 12 PNHAIWLNGLALLLKNQG-KYDEAKPFYERAIEI 44
                677778888999999999.699999999999987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   2.1e-07   0.00022       9      33 ..      11      35 ..      10      36 .. 0.95
   2 ?    4.0   0.0     0.058        61       1       9 [.      37      45 ..      37      47 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.1e-07
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +Pn+a  +n LA+ll+n+G+++eA+
  MMETSP0890-20130614|2474_1 11 HPNHAIWLNGLALLLKNQGKYDEAK 35
                8**********************97 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.058
   PF13431.1  1 lyekaleld 9 
                +ye+a+e+ 
  MMETSP0890-20130614|2474_1 37 FYERAIEIW 45
                7******86 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   7.1e-08   7.5e-05       5      30 ..      19      44 ..      14      44 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.1e-08
                TT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  5 ynlGdiYrqlGdydkAkeylekalel 30
                + l++++++ G+yd+Ak ++e+a+e+
  MMETSP0890-20130614|2474_1 19 NGLALLLKNQGKYDEAKPFYERAIEI 44
                5699********************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.4e-07   0.00015       2      30 ..      18      46 ..      18      51 .] 0.87

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.4e-07
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltk 30
                l+ La l  ++g+y++A  +yera+++++
  MMETSP0890-20130614|2474_1 18 LNGLALLLKNQGKYDEAKPFYERAIEIWE 46
                7889*******************888776 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-06    0.0015      27      60 ..      11      44 ..       4      48 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.4e-06
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraalal 60
                +P +a  l +la +l  +g++deA  ++++a+++
  MMETSP0890-20130614|2474_1 11 HPNHAIWLNGLALLLKNQGKYDEAKPFYERAIEI 44
                4899999999999999999999999999999865 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   1.6e-05     0.017       5      30 ..      18      44 ..      14      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
   PF13428.1  5 l.alarallalGdpdeAiallrralal 30
                l  la +l ++G +deA   ++ra++ 
  MMETSP0890-20130614|2474_1 18 LnGLALLLKNQGKYDEAKPFYERAIEI 44
                4379********************986 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.9e-05      0.02       6      28 ..      21      43 ..      20      47 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                lal+++++g++deA+  +er i+
  MMETSP0890-20130614|2474_1 21 LALLLKNQGKYDEAKPFYERAIE 43
                8999999*************997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.8e-05     0.061      21      50 ..      10      40 ..       2      50 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.8e-05
                T-HHHHCHHH.HHHHHHH---HHHHHHHHHC CS
   PF12895.2 21 kdpedaylya.lAlclylngeykrAyellrk 50
                + p++a +++ lAl l ++g+y++A  ++++
  MMETSP0890-20130614|2474_1 10 NHPNHAIWLNgLALLLKNQGKYDEAKPFYER 40
                235999****************999888866 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.7e-05      0.07      17      37 ..      27      47 ..      19      49 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.7e-05
                HTT-HHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlq 37
                ++gky+eA   Y+ A+e++++
  MMETSP0890-20130614|2474_1 27 NQGKYDEAKPFYERAIEIWEK 47
                79****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.29u 0.30s 00:00:00.59 Elapsed: 00:00:00.64
# Mc/sec: 190.96
//
Query:       MMETSP0890-20130614|2476_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   23.7  35.1    2.6e-05   22.6  24.4    1.5  1  PF05793.7 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6  24.4   1.9e-09   2.6e-05      42     341 ..      34     327 ..      14     339 .. 0.62

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.9e-09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX.....XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7  42 skWstvklerennqkkikqeeemkesgaGsefnralREearrkkyGiiskkyrlddqPWiLevggkeggqkkfrGireGgvsenasyyvltkapdgafeAypvneWynFnpvaryktLtleeAEeeferRkktlngfslm.lkkalkngeaavgdedeeeekkkgggGrskdLkikdkegddeed..sdesdkgdededeekkkkKkkkkaknkkkldDdkkkkrggdddade...ydsddGddegrEedyisDdsasendpe.............eredklseEeeekkeieqdedeeekeeekkeeegklskkkkka 341
                   Ws+ k+  e+++ ++ + ++  e  aG  +  a R    r  +   s k r   q Wi++ ++k    k++ G  eG +s   +y +ltk ++++feA +v++W +F+p ++y+tL+ e AE+  +      +  + + l +a++++++  +d ++ +   ++ +  +     ++ + dde+d  ++++++       + k    ++ a  + +ld    +  g d da +      ddG d +   d+ +Dd ++    e             e+e + ++E+e+ ++ +++ + e+++ee+ ++++  s ++k+a
  MMETSP0890-20130614|2476_1  34 EAWSEKKILYEEEESEVEDSDDETEKKAGWAVRAAERRLRSRLSW---SAKNRKRRQ-WIIK-NNK---NKRMLGQAEGVQS---KYVLLTK-ENDSFEARQVDDWVKFKPEIHYRTLSGEIAEKALQDLSVSYDVKEAVrLTRAVQKQQD-STDLKHLTRPISRFERLE-----RKLQTDDETDeyGNKKGAFTKTRTARIKTSEIDPFADAGTRLD-IGLNAAGADADAEDiieGFGDDGVDFDINDDFQDDDADE----EipdlndnvdlpsdEDE-NVNDEDEPASKPKKKISAENSDEENLPQDE-QSTEEKRA 327
                 579999999999999999999999999999998888865555533...344444444.****.333...479**********...8989998.6677***************************999998888886655415666666655.788888888744322222.....3333344444014444444433333333333377777777743.333455666555540003446666667777776666554....23335666667763333.344555544444554455555555444443.33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       776  (0.0567583); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.87
# Mc/sec: 1181.65
//
Query:       MMETSP0890-20130614|2485_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.44s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 347.47
//
Query:       MMETSP0890-20130614|2494_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.022   14.6   0.0    1.1  1  PF09149.5 Domain of unknown function (DUF1935)


Domain annotation for each model (and alignments):
>> PF09149.5  Domain of unknown function (DUF1935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.6e-06     0.022      35      83 ..      35      83 ..      15      87 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.6e-06
   PF09149.5 35 aFYNDtkdyemkvtvsfgadse.vkalgattvteeeeegelvaevvvkPl 83
                aF+ D + ye kv++ f+++ e + alg t v+ e+++ge+ + +  +P 
  MMETSP0890-20130614|2494_1 35 AFFPDDEVYETKVHLFFEKQVEmMGALGMTYVV-ENSDGEVKCAALWEPA 83
                8999******************7799****999.********99988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.82
# Mc/sec: 257.17
//
Query:       MMETSP0890-20130614|2505_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   13.3   0.0      0.066   12.4   0.0    1.5  2  PF12529.3 Xylosyltransferase C terminal


Domain annotation for each model (and alignments):
>> PF12529.3  Xylosyltransferase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.26   3.6e+03      93     110 ..      26      43 ..      18      45 .. 0.71
   2 ?   12.4   0.0   4.8e-06     0.066     107     151 ..      61     105 ..      53     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.26
   PF12529.3  93 dskrltLetwvspqqslk 110
                  +k+  + ++v+p+++ k
  MMETSP0890-20130614|2505_1  26 ATKHIDISAFVTPKVKTK 43 
                 456677788888888776 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.8e-06
   PF12529.3 107 qslklakaselakrLknlevgtewDqkEqvfrnfggllgpndelv 151
                 ++++  ++s l++rL+++ v++++D+ E v    + l+  nd+ +
  MMETSP0890-20130614|2505_1  61 DHFSKLRKSVLFRRLTKFLVSNKYDKIEDVSQTANYLVNRNDDDT 105
                 6778888899********************999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.97
# Mc/sec: 306.34
//
Query:       MMETSP0890-20130614|2502_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 1058.13
//
Query:       MMETSP0890-20130614|2503_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   14.0   0.2      0.053   13.4   0.2    1.3  1  PF11083.3 Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> PF11083.3  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.8e-06     0.053      41      87 ..       4      50 ..       2      61 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.8e-06
   PF11083.3 41 ydfsklNltesitleqvekeikklqeelekeldeYEklvrrLekfvk 87
                yd  +  + e +++ +v   i+k q  ++ ++ +YEk v  + ++ +
  MMETSP0890-20130614|2503_1  4 YDRIQQEIQEDVHIGNVLIGIEKYQAAIDFNRRNYEKYVLNITRYPE 50
                566667899******************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 458.43
//
Query:       MMETSP0890-20130614|2513_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   59.6   3.8    5.5e-10   38.6   0.1    2.4  3  PF00400.27 WD domain, G-beta repeat
     0.0016   16.5   1.0       0.29    9.1   0.1    2.1  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.91   6.2e+03       2      10 ..       1       9 [.       1      13 [. 0.63
   2 !   22.3   0.1   1.1e-08   7.5e-05      14      39 .]      18      44 ..      16      44 .. 0.95
   3 !   38.6   0.1     8e-14   5.5e-10       5      39 .]      51      85 ..      48      85 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.91
                EEEEEEESS CS
  PF00400.27  2 eckatlrgH 10
                ec++tl++ 
  MMETSP0890-20130614|2513_1  1 ECLKTLEHS 9 
                578887765 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.1e-08
                EEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27 14 Vtcvafspd.gpllasgSrDgtirlWd 39
                V  va+sp+  + l +g  D+++r+W+
  MMETSP0890-20130614|2513_1 18 VFTVAWSPSnKTQLSTGAFDKKVRIWN 44
                889***********************7 PP

  == domain 3    score: 38.6 bits;  conditional E-value: 8e-14
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH+s ++++a+s dg  l+s+S D+t+rlW+
  MMETSP0890-20130614|2513_1 51 RELVGHESRINSIAYSRDGITLVSASGDHTCRLWN 85
                6799******************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   4.3e-05      0.29     239     253 ..      36      50 ..      18      73 .. 0.78
   2 !    7.4   0.0   0.00014      0.93     234     253 ..      72      91 ..      54      93 .] 0.80

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 4.3e-05
   PF11715.3 239 rDgkLRvWnletgqc 253
                  D+k+R+Wn++t  c
  MMETSP0890-20130614|2513_1  36 FDKKVRIWNTDTSEC 50 
                 69************9 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00014
   PF11715.3 234 vftlsrDgkLRvWnletgqc 253
                 +++ s D++ R+Wn+++g+ 
  MMETSP0890-20130614|2513_1  72 LVSASGDHTCRLWNVANGTE 91 
                 56999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 365.35
//
Query:       MMETSP0890-20130614|2508_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-51  173.5   1.9    3.6e-51  173.0   1.3    1.2  1  PF00441.19 Acyl-CoA dehydrogenase, C-terminal domain
    1.3e-25   90.0   0.0    4.4e-25   88.3   0.0    2.0  2  PF02771.11 Acyl-CoA dehydrogenase, N-terminal domain
    1.3e-20   73.9   1.3      2e-20   73.2   0.9    1.3  1  PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
    4.2e-16   58.0   1.8    3.5e-15   55.1   0.5    2.3  2  PF02770.14 Acyl-CoA dehydrogenase, middle domain
  ------ inclusion threshold ------
      0.059   12.6   0.1       0.34   10.1   0.0    2.0  1  PF11794.3  4-hydroxyphenylacetate 3-hydroxylase N terminal


Domain annotation for each model (and alignments):
>> PF00441.19  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0   1.3   1.3e-54   3.6e-51       1     150 []     233     382 ..     233     382 .. 0.99

  Alignments for each domain:
  == domain 1    score: 173.0 bits;  conditional E-value: 1.3e-54
                 ---...-HHHHHHHHHH--------HHHHHHHHHHHHHH-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTS-HHHHHHHHHHHHHHHHHHHHHHHHH---GGGBTTSSHHHHHHHHTTTTT-------HHHHHHHHHH CS
  PF00441.19   1 gkGfavametlnheRlliaaaalglarraleealeyakqrkafgkplidfqlireklaemaaeleaarllvyraaealdagkpdsaeaslaKllaselaqevadeamqllGgrGyaeeyplerlyrdarvlrigeGtseiqrniiarrll 150
                 g+Gf++ m tl+ +R+ iaa+alg+a+++l+ a++ya++r+afgkp+ +  +i++kl +ma+++++arll++raa+  da+ p s+ea++aKl+ase+a+ +a++a+q+lGg+G+  ++p er+yrdar+++i+eGtse++ ++ia++ll
  MMETSP0890-20130614|2508_1 233 GDGFKYSMMTLDSGRIGIAAQALGIAQASLDIAAKYANERHAFGKPISSLYAIQHKLSQMACRIDSARLLTWRAASSKDAKLPISKEAAMAKLCASETATFCAHQAIQILGGMGFVSDMPAERYYRDARITEIYEGTSEVMHLVIAQNLL 382
                 79************************************************************************************************************************************************9986 PP

>> PF02771.11  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   1.6e-28   4.4e-25       1     112 [.      10     121 ..      10     122 .. 0.96
   2 ?   -3.5   0.0       4.9   1.4e+04      54      80 ..     366     390 ..     359     406 .. 0.49

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 1.6e-28
                 -HHHHHHHHHHHHHHHHHTTTTHHHHHHHT---HHHHHHHHH---TSTTS-TT-------HHHHHHHHHHHHHH--TTCHHHHHHHHCCHHHHHH---HHHHHHHHHHHHCS CS
  PF02771.11   1 teeqealrdevrefaeeelapeaaewdeeeefprelwrklaelGllgitvpeeyGGagldalelalvleelaradaglavalgvhsslvapailrfGteeqkkkyLpklasg 112
                 +e+qe++rd+vr f+ee++ p aa +d+++efp+ ++++l+elGl+g ++ ee GG+++da+++a+++ee++r++a+++++ +vh+sl + ++ r + + + ++ L ++a+g
  MMETSP0890-20130614|2508_1  10 NETQEQVRDMVRGFVEERIFPVAANYDKKHEFPWPIINELGELGLMGCCIKEENGGSDMDAVSYAIAIEEISRGCASTGAICSVHNSLYCDLVQRLADPSLFDEMLIPFAQG 121
                 699***********************9999***999*************************************************************999999999998887 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.9
                 -------HHHHHHHHHHHHHH--TTCH CS
  PF02771.11  54 yGGagldalelalvleelaradaglav 80 
                 y G+    + +++++++l +  a++ +
  MMETSP0890-20130614|2508_1 366 YEGTSE--VMHLVIAQNLLKEYAAIDI 390
                 555542..4444444544444444444 PP

>> PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.9   7.4e-24     2e-20       1     133 [.     248     370 ..     248     371 .. 0.97

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 7.4e-24
                 ---HHHH---HHHHHHHHHHHHTT-B-S----B----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTT---GGGBTT-HHHHHHHHHHH----TTT- CS
   PF08028.6   1 lgfaavalGaargalaafierarervraaggaklaedpatqlrlAeaaaeldaAralleraaerlealadrgaevtpeeraearrdaalavelavaavdrlfeaaGgsalfkesplqRfwRDahaaaaHalld 133
                 +g+aa+alG+a++ l+ + ++a+er+   +g+++++  a+q++l+++a ++d+Ar+l  raa+      d++ ++     +ea++++  a e+a+ ++ ++++  Gg ++ ++ p +R++RDa+++ ++++++
  MMETSP0890-20130614|2508_1 248 IGIAAQALGIAQASLDIAAKYANERHA--FGKPISSLYAIQHKLSQMACRIDSARLLTWRAASS----KDAKLPI----SKEAAMAKLCASETATFCAHQAIQILGGMGFVSDMPAERYYRDARITEIYEGTS 370
                 589************************..***********************************....9999999....99************************************************9986 PP

>> PF02770.14  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.077   2.1e+02       3      17 ..      58      72 ..      56      79 .. 0.84
   2 !   55.1   0.5   1.3e-18   3.5e-15       1      52 []     126     177 ..     126     177 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.077
  PF02770.14  3 alTEpgaGsDvanls 17
                ++ E+++GsD  ++s
  MMETSP0890-20130614|2508_1 58 CIKEENGGSDMDAVS 72
                899*******98776 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 1.3e-18
  PF02770.14   1 alalTEpgaGsDvanlsTtArrdgdgyvlnGtKwfisnggiadlalvlartd 52 
                 a+ l+E + GsD+a+ sTtA+  gd + lnG+K +i+ng+ ++ ++v+a td
  MMETSP0890-20130614|2508_1 126 AFLLSETSNGSDAAAASTTAKDMGDYWLLNGSKAWITNGPVSSGMIVFATTD 177
                 799**********************************************996 PP

>> PF11794.3  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012      0.34     176     259 ..     155     225 ..     152     229 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00012
                 E--EECEE--TTSSEEEE--SS--SCCGGGG-EEEEEETT----EEEE---TTGGGG-TTT.TTTTT----EEEEE-SSEE--G CS
   PF11794.3 176 rGaKalaTgaaladeilvlptramteedkdyalafavpmdapGlklicresyedtakspfdyplssrfdendalvvFDdVfVPw 259
                 +G Ka +T+++++  ++v  t      + +   a  vp+++ G+++ + e     +              +++lv+F+dV +P 
  MMETSP0890-20130614|2508_1 155 NGSKAWITNGPVSSGMIVFATTDKSL-KHKGISALLVPTNTRGVSFGAPEDKLGIH------------ASTTSLVIFEDVQIPK 225
                 79****************88887555.556667889********986654333332............3466788888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.72
# Mc/sec: 1394.55
//
Query:       MMETSP0890-20130614|2523_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-15   55.3   0.0    1.1e-14   54.8   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   8.1e-19   1.1e-14       9      53 ..      44      92 ..      38      97 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 8.1e-19
                XXXXXX.XXXXXX.---...-TTTTT--------TTT------------ CS
  PF00504.16  9 lpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpell 53
                ++ +lg +Dplgl +d+   +++rlr++E++HGR+AMlavlG ++++++
  MMETSP0890-20130614|2523_1 44 AQVPLGfWDPLGLLADAdqeRFDRLRYVEIKHGRIAMLAVLGQITTKAG 92
                6778999*******98889**************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:01.18
# Mc/sec: 199.02
//
Query:       MMETSP0890-20130614|2519_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       836  (0.0611469); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.77
# Mc/sec: 868.29
//
Query:       MMETSP0890-20130614|2527_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 331.26
//
Query:       MMETSP0890-20130614|2520_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-72  244.4   0.0    1.1e-43  149.1   0.0    2.1  2  PF02685.11 Glucokinase


Domain annotation for each model (and alignments):
>> PF02685.11  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   7.8e-31   1.1e-26       2     145 ..      67     228 ..      66     235 .. 0.87
   2 !  149.1   0.0     8e-48   1.1e-43     150     313 ..     251     425 ..     245     428 .. 0.91

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 7.8e-31
  PF02685.11   2 agDiGGTnarlalveaeeee............leleeiekyasadyasleealeaflaeaeaevkrpksavlAvAgpveedeveltNlp.Wviseeelakelgle..aveliNDfeavalaiplleeedllqlg...ggkkdaeapiavlGaGTGLGvalli 145
                 +gD+GGTn+rlal+++e  +            +++ + ++y++ dy++++++l++fl +++    +  +++lAvAgpve+d+v++tN + W+i+ ++l++e+ ++  +++l+NDf a ++++  l++ d++ ++   + ++ ++ap++ +GaGTGLG+ + +
  MMETSP0890-20130614|2520_1  67 VGDLGGTNSRLALYRIEDPSavsehslkevgsVSSLYRNTYKNIDYSDFTQVLHQFLIDSQLPHIELVAGCLAVAGPVENDRVNFTNKNlWSIDGRRLEEEFVMPreSMRLVNDFVANGFGAVTLGPGDYEDISpfgHINPTKGAPVVCVGAGTGLGETYAT 228
                 8*************9987766666777777777788899*******************88887788888******************866**************8779******************9988887611156788***************98765 PP

  == domain 2    score: 149.1 bits;  conditional E-value: 8e-48
  PF02685.11 150 rrvvlasEGGhvdfapeseeevellevlrkrl.grvsiErvlSGpGLvnlyealaald..klkaea.......lepaeitaaalegddalarealelFlailGsvagdlaLtllargGvyiaGGivpkilellk..ksaFreafedkgrlsalledipvyvvlneeagLlGaaaaa 313
                 r+ + +sEGGhv+fap++e + e+l++l++++ grvs+Erv+SG+G+vn+ye+la++   k+++++       +e a+i+a+a + dd l+++++++F++++Gs++g+ a++ +++gG+yi+GGi+ +  + ++  +s F+ a++d+grl++ll+dip ++v  +++gL Ga  +a
  MMETSP0890-20130614|2520_1 251 RYEAWPSEGGHVAFAPRDEIQREMLAFLSDKFqGRVSTERVVSGKGIVNIYEFLASKFpeKVNPRYdndirsaSEGAAIVAQA-SYDDELCAKVMDIFMNAYGSEVGNAAVKWIPKGGLYITGGIAGHNSDKIRppESPFMTAYKDRGRLQPLLNDIPLRLVKIDDLGLRGAHYVA 425
                 56799***************************************************996644444477777777888888888.57889********************************************855899*********************************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.42s 00:00:01.29 Elapsed: 00:00:00.79
# Mc/sec: 1610.72
//
Query:       MMETSP0890-20130614|2522_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 637.95
//
Query:       MMETSP0890-20130614|2544_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-39  134.7   0.3    1.4e-39  134.5   0.2    1.0  1  PF02966.11 Mitosis protein DIM1
     0.0059   16.1   0.2     0.0074   15.8   0.1    1.1  1  PF00085.15 Thioredoxin


Domain annotation for each model (and alignments):
>> PF02966.11  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.2     2e-43   1.4e-39       1      83 [.      10      92 .]      10      92 .] 0.99

  Alignments for each domain:
  == domain 1    score: 134.5 bits;  conditional E-value: 2e-43
  PF02966.11  1 llpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaekvknfaviylvdidevpdfnkmyeledpvtvlffyr 83
                llp+L+++++vdqailseeer+vviRFG+d d++C+++De Lakiaekvknfaviylvdi+evpdfn+myel+dp+tv+ff+r
  MMETSP0890-20130614|2544_1 10 LLPHLRSGWAVDQAILSEEERVVVIRFGHDYDSVCMQQDEALAKIAEKVKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 92
                69********************************************************************************7 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.1e-06    0.0074      13      78 ..      24      89 ..      18      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
                HHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEE CS
  PF00085.15 13 evaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlkl 78
                 ++++++ v++ f  ++   C +    ++k+ae++k+  v++ vd++e +d  + y+     t+++
  MMETSP0890-20130614|2544_1 24 ILSEEERVVVIRFGHDYDSVCMQQDEALAKIAEKVKNFAVIYLVDITEVPDFNTMYELYDPCTVMF 89
                4566789999**************************9999***********999998766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 393.69
//
Query:       MMETSP0890-20130614|2545_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 261.03
//
Query:       MMETSP0890-20130614|2552_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-18   65.6   0.0    3.8e-18   64.8   0.0    1.4  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   2.8e-22   3.8e-18       1      57 [.      69     128 ..      69     129 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 2.8e-22
   PF08373.5   1 ieidGpthFyrnsgvll...gktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57 
                 +e+dGpth+++  g  l   g+t++K+riL++lGw vi++py eW  l +   k +Yl+ 
  MMETSP0890-20130614|2552_1  69 VEVDGPTHYLKSKGSQLvenGNTSFKTRILRQLGWTVIHVPYCEWGVLLDAATKDAYLRA 128
                 69*******99996666699**************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|2562_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       124  (0.00906963); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.61
# Mc/sec: 208.21
//
Query:       MMETSP0890-20130614|2563_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0033   16.9   0.1      0.007   15.9   0.1    1.5  1  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   5.1e-07     0.007      21      64 ..      14      57 ..       8      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.1e-07
  PF06743.10 21 ffeklasalereLdsispelllnlvwSlclleyfpvellnkvls 64
                +f+++a +  ++L+ + p++l n+v++++++   +++l+ ++ls
  MMETSP0890-20130614|2563_1 14 LFNAIADVARTKLHDFTPQNLANTVLAFACISWSNLDLFVALLS 57
                899***************************98877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 275.40
//
Query:       MMETSP0890-20130614|2570_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.79
# Mc/sec: 157.73
//
Query:       MMETSP0890-20130614|2569_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 252.95
//
Query:       MMETSP0890-20130614|2576_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   13.7   0.5       0.04   13.7   0.3    1.8  2  PF11938.3  TLR4 regulator and MIR-interacting MSAP
        1.3    9.0   6.3        0.9    9.5   0.5    2.4  2  PF02413.12 Caudovirales tail fibre assembly protein
        4.5    5.3   6.6         11    4.0   0.1    2.2  2  PF00171.17 Aldehyde dehydrogenase family
        7.3    5.3  16.5         25    3.5  11.5    1.6  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF11938.3  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   1.2e-05      0.04      70     135 ..     124     182 ..     114     191 .. 0.87
   2 ?   -2.5   0.1       1.2     4e+03     110     125 ..     204     218 ..     193     232 .. 0.48

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.2e-05
   PF11938.3  70 lekekstsrrvakkmsetketlkelvekgvkveasaeskelkkaCerllEehEdeleelfkkeqee 135
                 + + ++t+r+ +kk++e++e+l ++       ++++ ++e++k+ e+l+ +hE++++ l kk++++
  MMETSP0890-20130614|2576_1 124 KREMDETRREAVKKNKERMEMLRNM-------NPEERIAEIRKERENLIRNHENDISRLQKKQKVK 182
                 5567889999999999999999999.......999***********************99999876 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.2
   PF11938.3 110 lkkaCerllEehEdel 125
                 lk+  er+  eh d++
  MMETSP0890-20130614|2576_1 204 LKEHHERM-KEHRDKM 218
                 33332222.2333333 PP

>> PF02413.12  Caudovirales tail fibre assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   0.00026       0.9      41      89 ..     131     179 ..     103     182 .. 0.87
   2 ?    2.0   0.4     0.058     2e+02      70      96 ..     199     225 ..     197     250 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
  PF02413.12  41 pgkwdvwdgeglpvwvtdakeelqaqaeekkqqllaqasekiaplqdav 89 
                 + ++ ++++e ++ + ++++ee +a+  ++++ l+++ ++ i+ lq++ 
  MMETSP0890-20130614|2576_1 131 RREAVKKNKERMEMLRNMNPEERIAEIRKERENLIRNHENDISRLQKKQ 179
                 5567788888888888888***************************886 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.058
  PF02413.12  70 kkqqllaqasekiaplqdavdlgmatd 96 
                 +++q+l++  e++++ +d++dl +  +
  MMETSP0890-20130614|2576_1 199 ERKQKLKEHHERMKEHRDKMDLWRQEH 225
                 688888889999999999888864332 PP

>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.4    0.0039        13      24      79 ..     120     180 ..     102     190 .. 0.71
   2 ?    4.0   0.1    0.0033        11      44      77 ..     191     224 ..     186     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0039
                 E---HHHHHHHHHHHHHHHH....HHCTS-HHHH.HHHHHHHHHHHHHTHHHHHHHHHHH- CS
  PF00171.17  24 aaataedvdaavaaAkaafk....awaklpaeeR.aeilrkaadlleerrdelaelevlet 79 
                 ++a ++++d+  ++A ++ k      +++++eeR aei ++  +l++++++++++l+ ++ 
  MMETSP0890-20130614|2576_1 120 PRAGKREMDETRREAVKKNKermeMLRNMNPEERiAEIRKERENLIRNHENDISRLQKKQK 180
                 55566666655555555444333278********445666677899999999999987665 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0033
                 HHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHH CS
  PF00171.17  44 awaklpaeeRaeilrkaadlleerrdelaelevl 77 
                 + a+lp+ eR++ l++ ++ ++e+rd++  +   
  MMETSP0890-20130614|2576_1 191 GIADLPPPERKQKLKEHHERMKEHRDKMDLWRQE 224
                 56899*********************99877655 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  11.5    0.0072        25      27     149 ..      62     235 ..      58     248 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0072
   PF10186.4  27 lrlanlkaeketlkkkveealeeaene...............................................kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle..asaqlekrraeqlaklqeeikrtksk...lnslesltaekRsql 149
                 +++ nl+++ e+l+++ +++++++e++                                               kk++ +  +l+ ++ +eri++irk  e+l ++ e++ +r++++++ ++ + +dl     +    +r+++l++++e +k+ ++k   + + +++++ +R+ +
  MMETSP0890-20130614|2576_1  62 VDVPNLRQDVEALREREQALIQSDESQpkppvpprldgaqeenleydqdedpgermhhpragkremdetrreavKKNKERMEMLRNMNPEERIAEIRKERENLIRNHENDISRLQKKQK-VKPPPRDLVdgIADLPPPERKQKLKEHHERMKEHRDKmdlWRQEHQDYLTERRAI 235
                 677899***************999999*******9999999999999999999999999999999999999999999999999999999999999999999999999999988888554.5555555555777777778888888888888876665111444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1414  (0.103423); expected 273.4 (0.02)
Passed bias filter:                      586  (0.0428613); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.44s 00:00:01.17 Elapsed: 00:00:00.70
# Mc/sec: 876.38
//
Query:       MMETSP0890-20130614|2584_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   23.4   2.0    5.7e-05   23.3   1.4    1.1  1  PF12708.2 Pectate lyase superfamily protein
  ------ inclusion threshold ------
      0.035   13.4   0.6      0.049   12.9   0.4    1.2  1  PF12218.3 N terminal extension of bacteriophage endosialidase


Domain annotation for each model (and alignments):
>> PF12708.2  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.4   8.3e-09   5.7e-05       4      23 ..      25      44 .]      21      44 .] 0.91

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.3e-09
   PF12708.2  4 VkdfGAkgDGvtDdtaAiqk 23
                V d+GA gDG+tDdt A+q+
  MMETSP0890-20130614|2584_1 25 VADYGAIGDGKTDDTDALQA 44
                99****************96 PP

>> PF12218.3  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   7.1e-06     0.049       1      14 [.      30      43 ..      30      44 .] 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.1e-06
                -------B-HHHHH CS
   PF12218.3  1 avGDGvtdDtaals 14
                a+GDG+tdDt+al+
  MMETSP0890-20130614|2584_1 30 AIGDGKTDDTDALQ 43
                89**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       110  (0.00804564); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.55
# Mc/sec: 191.71
//
Query:       MMETSP0890-20130614|2588_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.69
# Mc/sec: 267.42
//
Query:       MMETSP0890-20130614|2591_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 229.51
//
Query:       MMETSP0890-20130614|2593_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-10   39.8   0.0    3.2e-10   39.5   0.0    1.2  1  PF01981.11 Peptidyl-tRNA hydrolase PTH2
  ------ inclusion threshold ------
      0.058   13.2   0.9       0.18   11.6   0.3    2.0  2  PF14420.1  Clr5 domain


Domain annotation for each model (and alignments):
>> PF01981.11  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   4.7e-14   3.2e-10       4      79 ..      22      99 ..      20     130 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 4.7e-14
                EEEEEESSSS..S----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEESSHHHHHHHHHHHHHTT---EE CS
  PF01981.11  4 mvlvvrkdlk..mgkGKiaaqcaHAavaavekvekkkkellkaWlkegqkKvvlkveseeellelaekakseglpaav 79
                + +v+rkdl     +G ++aq++HA++aa+ ++++++ + l   + + ++Kvvl+v++  el+++aek kseg+++++
  MMETSP0890-20130614|2593_1 22 QWIVLRKDLAetWPTGSMVAQACHASIAAIWESQNDELTQLYMKEIARMHKVVLEVKDDVELNTVAEKLKSEGIIFSL 99
                789******722569***************998888888888888899**************************9876 PP

>> PF14420.1  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.6e-05      0.18       5      30 ..      52      77 ..      49      94 .. 0.84
   2 ?   -1.4   0.0      0.31   2.1e+03      10      19 ..      94     103 ..      91     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.6e-05
   PF14420.1  5 WeaykdiierLYidenksLkeVmeiM 30
                We+  d++++LY++e   +++V+ + 
  MMETSP0890-20130614|2593_1 52 WESQNDELTQLYMKEIARMHKVVLEV 77
                *************9988888887555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.31
   PF14420.1  10 diierLYide 19 
                  ii +L+i++
  MMETSP0890-20130614|2593_1  94 GIIFSLWIEQ 103
                 5899***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      596  (0.0435927); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 472.12
//
Query:       MMETSP0890-20130614|2587_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       840  (0.0614394); expected 273.4 (0.02)
Passed bias filter:                      574  (0.0419836); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.48s 00:00:01.54 Elapsed: 00:00:01.14
# Mc/sec: 1394.05
//
Query:       MMETSP0890-20130614|2605_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2366  (0.173054); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        39  (0.00285255); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.77u 0.58s 00:00:02.35 Elapsed: 00:00:01.28
# Mc/sec: 803.15
//
Query:       MMETSP0890-20130614|2617_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-43  143.8   0.0    2.7e-22   78.3   0.0    2.0  2  PF13424.1  Tetratricopeptide repeat
    2.1e-34  116.2   0.5    2.8e-14   52.3   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    5.9e-16   57.1   1.0    5.6e-07   28.7   0.0    3.1  3  PF00515.23 Tetratricopeptide repeat
    7.8e-16   56.5   0.4    3.9e-05   23.1   0.0    3.1  3  PF07719.12 Tetratricopeptide repeat
    5.4e-15   54.6   0.2      3e-11   42.6   0.0    2.1  2  PF13414.1  TPR repeat
    1.8e-13   49.0   0.2    4.4e-06   25.9   0.0    3.1  3  PF13176.1  Tetratricopeptide repeat
    8.5e-11   42.1   0.2    4.3e-07   30.3   0.1    2.2  2  PF13432.1  Tetratricopeptide repeat
    9.7e-10   37.7   0.5    0.00063   19.6   0.0    3.6  3  PF13431.1  Tetratricopeptide repeat
    3.5e-09   35.6   0.3     0.0051   16.3   0.0    3.1  3  PF13181.1  Tetratricopeptide repeat
    8.6e-08   32.0   0.3     0.0025   18.2   0.0    3.1  3  PF13428.1  Tetratricopeptide repeat
    2.3e-05   24.2   0.0       0.49   10.8   0.0    3.1  3  PF07721.9  Tetratricopeptide repeat
    2.5e-05   23.8   0.5      0.066   12.9   0.0    3.1  3  PF07720.7  Tetratricopeptide repeat
      6e-05   22.9   0.0    0.00014   21.7   0.0    1.7  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00014   21.9   0.1       0.38   11.1   0.0    3.1  3  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.033   13.3   0.3        4.9    6.3   0.0    2.5  3  PF10516.4  SHNi-TPR
      0.046   14.0   0.0        2.4    8.4   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
      0.059   13.0   0.1          4    7.1   0.0    2.8  2  PF11512.3  Agrobacterium tumefaciens protein Atu4866
       0.11   12.4   0.1        1.1    9.2   0.0    2.2  1  PF12688.2  Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   2.3e-22   1.8e-19      16      77 ..       3      65 ..       1      66 [. 0.94
   2 !   78.3   0.0   3.6e-25   2.7e-22       1      69 [.      30      99 ..      30     100 .] 0.98

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 2.3e-22
   PF13424.1 16 rrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                  +g+ydeA  l e+al +  + lg++hpd+a++lnnla l++ +g+ydeA +++++A+ei e
  MMETSP0890-20130614|2617_1  3 SYQGKYDEAKPLQERALRIrEEILGPNHPDVATTLNNLAGLLQDQGKYDEAMPLFQRAIEIGE 65
                579****************88889************************************965 PP

  == domain 2    score: 78.3 bits;  conditional E-value: 3.6e-25
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleyl 69
                hpd+at+lnnla++l+ +g+ydeA  l+++a+e+  ++lg++hpd+++ lnnla l+  +g+ydeA++++
  MMETSP0890-20130614|2617_1 30 HPDVATTLNNLAGLLQDQGKYDEAMPLFQRAIEIgEESLGPNHPDLVSWLNNLAVLLINQGKYDEAKPLF 99
                9******************************************************************987 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   2.9e-13   2.2e-10      12      42 .]       2      32 ..       1      32 [. 0.96
   2 !   52.3   0.0   3.7e-17   2.8e-14       1      42 []      33      74 ..      33      74 .. 0.99
   3 !   21.5   0.0   1.8e-07   0.00014       3      25 ..      77      99 ..      75     100 .] 0.92

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.9e-13
   PF13374.1 12 lrargryeeAlaleeealairrrllGddHPd 42
                l+ +g+y+eA +l+e+al ir+++lG++HPd
  MMETSP0890-20130614|2617_1  2 LSYQGKYDEAKPLQERALRIREEILGPNHPD 32
                788***************************8 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 3.7e-17
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a++lnnLA +l+++g+y+eA +l+++a +i ++ lG++HPd
  MMETSP0890-20130614|2617_1 33 VATTLNNLAGLLQDQGKYDEAMPLFQRAIEIGEESLGPNHPD 74
                79***************************************8 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 1.8e-07
   PF13374.1  3 aalnnLAlalrargryeeAlale 25
                + lnnLA++l ++g+y+eA +l+
  MMETSP0890-20130614|2617_1 77 SWLNNLAVLLINQGKYDEAKPLF 99
                68******************995 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0019       1.4      12      31 ..       3      22 ..       1      24 [. 0.85
   2 !   28.7   0.0   7.4e-10   5.6e-07       1      30 [.      34      63 ..      34      66 .. 0.94
   3 !   17.6   0.0   2.5e-06    0.0019       4      23 ..      79      98 ..      76     100 .] 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0019
                HHTT-HHHHHHHHHHHHHHH CS
  PF00515.23 12 lklgkydeAleyyekALeln 31
                 ++gkydeA    e+AL+++
  MMETSP0890-20130614|2617_1  3 SYQGKYDEAKPLQERALRIR 22
                68*******99999999886 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 7.4e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a +l+nl+ +++ +gkydeA   +++A+e+
  MMETSP0890-20130614|2617_1 34 ATTLNNLAGLLQDQGKYDEAMPLFQRAIEI 63
                5689*************************8 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 2.5e-06
                HHHHHHHHHHTT-HHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAley 23
                l+nl++++ ++gkydeA   
  MMETSP0890-20130614|2617_1 79 LNNLAVLLINQGKYDEAKPL 98
                8****************865 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   9.4e-05     0.071      12      31 ..       3      22 ..       1      25 [. 0.88
   2 !   23.1   0.0   5.1e-08   3.9e-05       2      30 ..      35      63 ..      34      67 .. 0.92
   3 !   17.8   0.0   2.5e-06    0.0019       3      24 ..      78      99 ..      76     100 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.4e-05
                HHTT-HHHHHHHHHHHHHH- CS
  PF07719.12 12 yklgdyeeAleafekAleld 31
                 ++g+y+eA+ + e+Al++ 
  MMETSP0890-20130614|2617_1  3 SYQGKYDEAKPLQERALRIR 22
                58***************986 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 5.1e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  l+nl+ ++  +g+y+eA  +f++A+e+
  MMETSP0890-20130614|2617_1 35 TTLNNLAGLLQDQGKYDEAMPLFQRAIEI 63
                6799***********************98 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 2.5e-06
                HHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleaf 24
                +l+nl+ +++++g+y+eA+ +f
  MMETSP0890-20130614|2617_1 78 WLNNLAVLLINQGKYDEAKPLF 99
                89****************9876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     2e-05     0.015      14      44 ..       3      41 ..       1      41 [. 0.83
   2 !   42.6   0.0   3.9e-14     3e-11       2      58 ..      33      96 ..      32      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-05
   PF13414.1 14 fkegdydeAieayekAleld.....pnnae...lyynlA 44
                 ++g+ydeA  + e+Al+++     pn+++    ++nlA
  MMETSP0890-20130614|2617_1  3 SYQGKYDEAKPLQERALRIReeilgPNHPDvatTLNNLA 41
                579***************966666788877777999998 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 3.9e-14
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAl 58
                +A +l++l+  l  +g+ydeA  ++++A+e+      pn+++    ++nlA +++++g +y+eA 
  MMETSP0890-20130614|2617_1 33 VATTLNNLAGLLQDQGKYDEAMPLFQRAIEIGeeslgPNHPDlvsWLNNLAVLLINQG-KYDEAK 96
                6889*************************974344449999999899***********.6***95 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.006       4.5      11      34 ..       4      27 ..       2      29 .. 0.84
   2 !   25.9   0.0   5.8e-09   4.4e-06       1      31 [.      36      66 ..      36      71 .. 0.86
   3 !   12.7   0.0   9.7e-05     0.074       2      21 ..      79      98 ..      78     100 .] 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.006
   PF13176.1 11 rlgdyekAielyeraLaltkdpld 34
                 +g+y++A  l eraL+++++ l+
  MMETSP0890-20130614|2617_1  4 YQGKYDEAKPLQERALRIREEILG 27
                69************9999888776 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 5.8e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                +l+nLa l +++g+y++A  l++ra+++ ++
  MMETSP0890-20130614|2617_1 36 TLNNLAGLLQDQGKYDEAMPLFQRAIEIGEE 66
                79**********************7766554 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 9.7e-05
   PF13176.1  2 llnLarlysrlgdyekAiel 21
                l+nLa+l  ++g+y++A  l
  MMETSP0890-20130614|2617_1 79 LNNLAVLLINQGKYDEAKPL 98
                79***************665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   5.6e-10   4.3e-07       8      64 ..       3      72 ..       1      73 [. 0.90
   2 !    9.9   0.0    0.0014         1       3      20 ..      82      99 ..      80     100 .] 0.91

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 5.6e-10
   PF13432.1  8 lraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaPdd 64
                 ++G+ydeA ++ e+al+          P+ a  l +la +l ++g++deA  l+++a+     +l+P++
  MMETSP0890-20130614|2617_1  3 SYQGKYDEAKPLQERALRIReeilgpnhPDVATTLNNLAGLLQDQGKYDEAMPLFQRAIeigeeSLGPNH 72
                689**********99999999*************************************967666666665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0014
   PF13432.1  3 lArallraGdydeAlaal 20
                lA +l+++G+ydeA +++
  MMETSP0890-20130614|2617_1 82 LAVLLINQGKYDEAKPLF 99
                899***********9987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0         2   1.5e+03      25      33 ..       4      12 ..       2      13 .. 0.81
   2 !   13.7   0.0   6.6e-05      0.05       9      32 ..      30      53 ..      15      54 .. 0.93
   3 !   19.6   0.0   8.3e-07   0.00063       9      33 ..      72      96 ..      56      97 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 2
   PF13431.1 25 nnGdleeAe 33
                 +G+++eA+
  MMETSP0890-20130614|2617_1  4 YQGKYDEAK 12
                589****96 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 6.6e-05
   PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
                +P+ a  +nnLA ll+++G+++eA
  MMETSP0890-20130614|2617_1 30 HPDVATTLNNLAGLLQDQGKYDEA 53
                788899****************99 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 8.3e-07
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ +  +nnLA+ll n+G+++eA+
  MMETSP0890-20130614|2617_1 72 HPDLVSWLNNLAVLLINQGKYDEAK 96
                5888999****************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.009       6.8      14      31 ..       5      22 ..       2      25 .. 0.86
   2 !   16.3   0.0   6.6e-06    0.0051       3      30 ..      36      63 ..      34      65 .. 0.93
   3 !    9.6   0.0   0.00098      0.75       4      22 ..      79      97 ..      77     100 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.009
                TT-HHHHHHHHH---HHH CS
   PF13181.1 14 lGdydkAkeylekalelk 31
                 G+yd+Ak   e+al + 
  MMETSP0890-20130614|2617_1  5 QGKYDEAKPLQERALRIR 22
                79************9986 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 6.6e-06
                -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                +++nl+ ++ + G+yd+A+  +++a+e+
  MMETSP0890-20130614|2617_1 36 TLNNLAGLLQDQGKYDEAMPLFQRAIEI 63
                689***********************97 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00098
                TTT---HHHHTT-HHHHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAke 22
                ++nl+ ++ + G+yd+Ak 
  MMETSP0890-20130614|2617_1 79 LNNLAVLLINQGKYDEAKP 97
                579**************95 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.052        40      14      38 ..       5      34 ..       1      37 [. 0.79
   2 !   18.2   0.0   3.2e-06    0.0025       4      34 ..      37      67 ..      33      79 .. 0.79
   3 ?    6.7   0.0     0.015        12       6      24 ..      81      99 ..      76     100 .] 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.052
   PF13428.1 14 lGdpdeAiallrrala.....laPddaeal 38
                +G +deA  l +ral+     l+P+++++ 
  MMETSP0890-20130614|2617_1  5 QGKYDEAKPLQERALRireeiLGPNHPDVA 34
                899***********9976776677777766 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 3.2e-06
   PF13428.1  4 llalarallalGdpdeAiallrralalaPdd 34
                l  la +l ++G +deA+ l++ra++ + ++
  MMETSP0890-20130614|2617_1 37 LNNLAGLLQDQGKYDEAMPLFQRAIEIGEES 67
                6689*********************955443 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.015
   PF13428.1  6 alarallalGdpdeAiall 24
                 la +l+++G +deA  l+
  MMETSP0890-20130614|2617_1 81 NLAVLLINQGKYDEAKPLF 99
                69*************9876 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.8   2.2e+03      14      20 ..       5      11 ..       5      14 .. 0.84
   2 !   10.8   0.0   0.00065      0.49       3      26 .]      36      59 ..      34      59 .. 0.85
   3 !    9.5   0.0    0.0018       1.3       6      21 ..      81      96 ..      79      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.8
                ------- CS
   PF07721.9 14 lGdldeA 20
                +G +deA
  MMETSP0890-20130614|2617_1  5 QGKYDEA 11
                899***9 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00065
                HH---HHHHHH-------HHHHHT CS
   PF07721.9  3 allaLArallalGdldeAraller 26
                +l +LA +l+++G +deA  l++r
  MMETSP0890-20130614|2617_1 36 TLNNLAGLLQDQGKYDEAMPLFQR 59
                5679**************888765 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0018
                --HHHHHH-------H CS
   PF07721.9  6 aLArallalGdldeAr 21
                +LA +l  +G +deA 
  MMETSP0890-20130614|2617_1 81 NLAVLLINQGKYDEAK 96
                8**************6 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.21   1.6e+02      14      20 ..       5      11 ..       4      14 .. 0.92
   2 !   12.9   0.0   8.7e-05     0.066       8      25 ..      41      58 ..      39      66 .. 0.87
   3 ?    5.8   0.0     0.014        11      13      21 ..      88      96 ..      81     100 .] 0.76

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.21
                TT-HHHH CS
   PF07720.7 14 kkkyqeA 20
                ++ky+eA
  MMETSP0890-20130614|2617_1  5 QGKYDEA 11
                8*****9 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 8.7e-05
                HHHHHHTT-HHHHHHH.. CS
   PF07720.7  8 AaefynkkkyqeArelfs 25
                A  +++++ky+eA  lf+
  MMETSP0890-20130614|2617_1 41 AGLLQDQGKYDEAMPLFQ 58
                6679************99 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.014
                HTT-HHHHH CS
   PF07720.7 13 nkkkyqeAr 21
                n++ky+eA 
  MMETSP0890-20130614|2617_1 88 NQGKYDEAK 96
                9******95 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-07   0.00014       2      78 ..       5      96 ..       4     100 .] 0.72

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.9e-07
                TT-HHHHHHHHHHHCCC-ST....-H.HHH.CHHHHHHHHHH---HHHHHHHHHC......TSHCHCB.HHHHH..HHHHHHHHTT-HHHHC CS
   PF12895.2  2 qhnyknAlflaekllaespk....dp.eda.ylyalAlclylngeykrAyellrk......leldsss.lgcry..llArcllklgkydeAi 78
                q+ y++A  l e++l    +    ++ + a  l +lA  l+ +g+y++A+ l+++      + l +++ +  ++   lA  l+ +gkydeA 
  MMETSP0890-20130614|2617_1  5 QGKYDEAKPLQERALRIREEilgpNHpDVAtTLNNLAGLLQDQGKYDEAMPLFQRaieigeESLGPNHpDLVSWlnNLAVLLINQGKYDEAK 96
                57788888888888888877777633344415555999999999999999999999888877777777544455334478888999999995 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.3   9.8e+02      13      20 ..       5      12 ..       2      24 .. 0.80
   2 !   11.1   0.0    0.0005      0.38       6      28 ..      41      62 ..      39      63 .. 0.79
   3 ?    6.6   0.0     0.014        11       5      23 ..      81      99 ..      81     100 .] 0.89

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.3
                HHHHHHHH CS
   PF13174.1 13 lgdtdeAl 20
                +g++deA+
  MMETSP0890-20130614|2617_1  5 QGKYDEAK 12
                56999997 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0005
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                ++l+++ +g++deA+ +++r i+
  MMETSP0890-20130614|2617_1 41 AGLLQD-QGKYDEAMPLFQRAIE 62
                456666.55***********997 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAleal 23
                +la +++++g++deA+ ++
  MMETSP0890-20130614|2617_1 81 NLAVLLINQGKYDEAKPLF 99
                699************9766 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.018        14      24      37 ..      15      28 ..       5      29 .. 0.75
   2 ?    6.3   0.0    0.0064       4.9       4      36 ..      37      69 ..      34      71 .. 0.82
   3 ?   -3.8   0.0       9.4   7.1e+03      15      20 ..      90      95 ..      89      95 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.018
   PF10516.4 24 lrkaLeLreqllpp 37
                 ++aL +re++l p
  MMETSP0890-20130614|2617_1 15 QERALRIREEILGP 28
                589*******9976 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0064
   PF10516.4  4 ydlLGEiSlEnEnFpqAveDlrkaLeLreqllp 36
                +  L+ + + ++++++A   +++a+e+ e+ l 
  MMETSP0890-20130614|2617_1 37 LNNLAGLLQDQGKYDEAMPLFQRAIEIGEESLG 69
                566777778899**************9888765 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 9.4
   PF10516.4 15 EnFpqA 20
                +++++A
  MMETSP0890-20130614|2617_1 90 GKYDEA 95
                689998 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0032       2.4      47      82 ..      10      46 ..       2      49 .. 0.72
   2 ?    4.0   0.0      0.08        61      65      82 ..      71      88 ..      50      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0032
   PF14357.1 47 edeslaerlne.averFeaeHPklagtlrnildsLan 82
                e ++l+er  +   e    +HP++a tl+n++  L+ 
  MMETSP0890-20130614|2617_1 10 EAKPLQERALRiREEILGPNHPDVATTLNNLAGLLQD 46
                55566666666334445679***********999985 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.08
   PF14357.1 65 eHPklagtlrnildsLan 82
                +HP+l + l+n++  L n
  MMETSP0890-20130614|2617_1 71 NHPDLVSWLNNLAVLLIN 88
                7***********999976 PP

>> PF11512.3  Agrobacterium tumefaciens protein Atu4866
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0053         4      23      48 ..       4      29 ..       1      60 [. 0.75
   2 ?    1.8   0.0      0.24   1.8e+02      21      31 ..      86      96 ..      80      97 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0053
   PF11512.3 23 pngrYdearGeresayqGrYevtGdh 48
                 +g+Ydea+  +e+a + r e+ G +
  MMETSP0890-20130614|2617_1  4 YQGKYDEAKPLQERALRIREEILGPN 29
                689************99999998865 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.24
   PF11512.3 21 LlpngrYdear 31
                L+ +g+Ydea+
  MMETSP0890-20130614|2617_1 86 LINQGKYDEAK 96
                7789*****96 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0014       1.1       6      32 ..      39      65 ..      34     100 .] 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0014
   PF12688.2  6 eragarDstGeeakAvplYrrAlaaGL 32
                + ag     G+ ++A+pl++rA++ G 
  MMETSP0890-20130614|2617_1 39 NLAGLLQDQGKYDEAMPLFQRAIEIGE 65
                568889999*************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.40u 0.33s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 413.17
//
Query:       MMETSP0890-20130614|2613_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-14   52.7   0.6    5.5e-14   52.3   0.4    1.2  1  PF01145.20 SPFH domain / Band 7 family
     0.0038   16.6   0.0     0.0056   16.0   0.0    1.3  1  PF13421.1  SPFH domain-Band 7 family
  ------ inclusion threshold ------
      0.041   13.7   0.1      0.062   13.1   0.1    1.3  1  PF08153.7  NGP1NT (NUC091) domain


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.4   1.2e-17   5.5e-14      82     177 ..       5     101 ..       1     110 [. 0.89

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.2e-17
  PF01145.20  82 vaqeeenlenllrrllesalrevlsqmtldeilsn.rselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaa..eaeiaraea 177
                 v  + +++++++++ l sa+r +++++++  ++++ r+el++el   l ++l+ ygi v dv +++v++p+ +  a+++k++ae+ea+  e  +a+++ 
  MMETSP0890-20130614|2613_1   5 V--GKDYVNTIISPELASAIRGLTAEHDAKSLYTSaRQELQDELHSILDAKLNPYGIDVYDVLLKSVQLPQLLVTAIESKAKAEQEAQqmEFVLAKERS 101
                 5..6799**************************9956**************************************************877444444444 PP

>> PF13421.1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-06    0.0056     159     209 ..      35      85 ..       5      87 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-06
   PF13421.1 159 laanseelseklreaikkelaeyGleleellienislpeevekaldkrssm 209
                 ++++ +el+++l++ ++++l+ yG+++ ++l++++ lp+ +  a++ ++++
  MMETSP0890-20130614|2613_1  35 YTSARQELQDELHSILDAKLNPYGIDVYDVLLKSVQLPQLLVTAIESKAKA 85 
                 5677899********************************999999988765 PP

>> PF08153.7  NGP1NT (NUC091) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.4e-05     0.062      46     119 ..      43     119 ..      32     127 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
   PF08153.7  46 qeaLekfr.eeleekkkdpysvllkrskLPlsLlkdkkkkkkkvkiletesfeetFgp.kaqRkrpkl.avssleel 119
                 q++L+++   +l+    d y vllk+ +LP  L++  ++k k  +  ++++f  +  +  a Rkr++   +++++++
  MMETSP0890-20130614|2613_1  43 QDELHSILdAKLNPYGIDVYDVLLKSVQLPQLLVTAIESKAKAEQEAQQMEFVLAKERsEADRKRIEAqGIADFQNI 119
                 6666654414567777899************9999997777777777777776655443667887765234555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 843.33
//
Query:       MMETSP0890-20130614|2627_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   22.0   3.4     0.0047   16.9   0.4    2.6  2  PF14129.1 Domain of unknown function (DUF4296)
     0.0037   17.2   0.9       0.16   11.9   0.5    2.5  2  PF09687.5 Plasmodium RESA N-terminal
  ------ inclusion threshold ------
      0.018   14.3   2.5       0.38    9.9   0.2    2.8  3  PF07299.6 Fibronectin-binding protein (FBP)
      0.079   12.0   0.0       0.14   11.2   0.0    1.4  1  PF08745.6 UPF0278 family
       0.11   12.3   1.5        2.5    7.8   0.1    2.2  2  PF09074.5 Mer2
        2.9    7.2   6.4        2.1    7.7   0.4    3.0  4  PF04255.9 Protein of unknown function (DUF433)


Domain annotation for each model (and alignments):
>> PF14129.1  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   2.1e-06    0.0047      33      63 ..     102     132 ..      89     137 .. 0.87
   2 !    5.2   0.1    0.0094        21      39      64 ..     225     250 ..     171     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.1e-06
   PF14129.1  33 ekklaykkailkkygidsaqfdsslvYYarh 63 
                 +  ++++++i+k y+++++++++ ++YY++ 
  MMETSP0890-20130614|2627_1 102 QYLQELQEKIFKEYNVTEEDLEQAVDYYEAV 132
                 5567899*********************975 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0094
   PF14129.1  39 kkailkkygidsaqfdsslvYYarhp 64 
                    +lkky++d   f++ l+ +++hp
  MMETSP0890-20130614|2627_1 225 VAVVLKKYHLDHLMFQTALEEFNEHP 250
                 4569***********99888777776 PP

>> PF09687.5  Plasmodium RESA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   6.8e-05      0.16      12      90 ..      44     123 ..      37     131 .. 0.86
   2 ?    2.9   0.0     0.043        97      18      36 ..     167     185 ..     140     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.8e-05
   PF09687.5  12 nkkikslgeviskkdmyiiwnyvlkyekkkykdmiknLwnyleelakky..nipeeikkklweeckkdltkelkklekeyn 90 
                 +++i++l  +i+ +++++i+n+++++++     +++++ n  +++ ++   ++  e  +++++e ++++ ke++ +e+ ++
  MMETSP0890-20130614|2627_1  44 DEEIEELP-CITPDKVVSIFNKLNSNMNTHIAGVMRRIQNSGQNVPQQIlfQYLVEHFEQYLQELQEKIFKEYNVTEEDLE 123
                 56677776.8***********************************9999445555999****************9999876 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.043
   PF09687.5  18 lgeviskkdmyiiwnyvlk 36 
                 l e ++ ++m+ii+ ++++
  MMETSP0890-20130614|2627_1 167 LPESLTVEKMCIIFEEYMS 185
                 677899**********996 PP

>> PF07299.6  Fibronectin-binding protein (FBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00017      0.38      22      95 ..      39     113 ..      29     125 .. 0.81
   2 ?    2.2   0.0     0.038        87       9      51 ..     144     186 ..     140     211 .. 0.78
   3 ?    1.1   0.1     0.084   1.9e+02      11      51 ..     195     235 ..     186     256 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00017
   PF07299.6  22 asvnDkkvvkavkalaaekilelfeelseeekellekllkvk.drkeaeklLeelkeyvipfeevskkqlkklFk 95 
                  +++D + ++ + +++ +k+ ++f++l+++ ++ ++ +++   ++ +       ++ +v  fe+  ++  +k+Fk
  MMETSP0890-20130614|2627_1  39 VNAEDDEEIEELPCITPDKVVSIFNKLNSNMNTHIAGVMRRIqNSGQNVPQQILFQYLVEHFEQYLQELQEKIFK 113
                 567899999999999999*******99999999999888755366665555555778888999999998899997 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.038
   PF07299.6   9 fikkqveklvnayasvnDkkvvkavkalaaekilelfeelsee 51 
                  +k+ +++l + y ++  k  v+   +l+ ek+  +fee  + 
  MMETSP0890-20130614|2627_1 144 KVKEATNQLRQLYINCGGKPCVDLPESLTVEKMCIIFEEYMSA 186
                 68999****************************9999886543 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.084
   PF07299.6  11 kkqveklvnayasvnDkkvvkavkalaaekilelfeelsee 51 
                 ++++++++ + +sv+ ++  ++ +a ++ek+  ++++ + +
  MMETSP0890-20130614|2627_1 195 TEHLHQIKAKGTSVTTAELQEVRQAKISEKVAVVLKKYHLD 235
                 57788899999999999999999999999999999876655 PP

>> PF08745.6  UPF0278 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.3e-05      0.14      90     175 ..      97     191 ..      49     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.3e-05
   PF08745.6  90 aellyeyieelreridkGlrvaEeavreaaaeal......keeveeevvgkiikklRekYRealRkGilDsaeDldv...llLAkELdaavvasD 175
                  e + +y++el+e+i k   v+Ee + +a +            v +e+v +  ++lR+ Y +   k  +D  e l v    ++ +E  +avva+ 
  MMETSP0890-20130614|2627_1  97 VEHFEQYLQELQEKIFKEYNVTEEDLEQAVDYYEavppgsTSGVRNEKVKEATNQLRQLYINCGGKPCVDLPESLTVekmCIIFEEYMSAVVAAQ 191
                 567999********************99987655679998889999**************99988888888887765333566667777777665 PP

>> PF09074.5  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0011       2.5      80     154 ..      56     129 ..      42     132 .. 0.90
   2 ?    3.3   0.0     0.026        60      40      77 ..     165     204 ..     164     244 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
   PF09074.5  80 eeikklikklgaqlnnqlkevvkaleeklktinknsalkqvavselerinsdeskqiikseearqdeleksvdat 154
                 + ++++ +kl++++n  ++ v++ ++++++++ + + l q  v++ e+++++   +i k+ +   + le++vd+ 
  MMETSP0890-20130614|2627_1  56 DKVVSIFNKLNSNMNTHIAGVMRRIQNSGQNVPQ-QILFQYLVEHFEQYLQELQEKIFKEYNVTEEDLEQAVDYY 129
                 67888999*****************999999888.99999********************999999999999985 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.026
   PF09074.5  40 idlkE..ksekLinvlnenskeLlkvveqlnekLesqeas 77 
                 +dl E    ek+  +++e  + +  + + ++e+L +++a 
  MMETSP0890-20130614|2627_1 165 VDLPEslTVEKMCIIFEEYMSAVVAAQHAFTEHLHQIKAK 204
                 56666556789999********************888743 PP

>> PF04255.9  Protein of unknown function (DUF433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.7   6.1e+03      39      49 ..      48      58 ..      43      62 .. 0.64
   2 ?    7.7   0.4    0.0009       2.1      35      56 .]     109     129 ..     100     129 .. 0.93
   3 ?    1.3   0.1     0.088     2e+02       8      14 ..     159     165 ..     158     166 .. 0.89
   4 ?   -2.6   0.0       1.4   3.3e+03      33      48 ..     224     238 ..     204     244 .. 0.55

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.7
   PF04255.9 39 edYPsLtredi 49
                e+ P +t++++
  MMETSP0890-20130614|2627_1 48 EELPCITPDKV 58
                56666777766 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0009
   PF04255.9  35 eeiledYPsLtrediraalaYa 56 
                 e i ++Y  +t+ed+++a++Y+
  MMETSP0890-20130614|2627_1 109 EKIFKEYN-VTEEDLEQAVDYY 129
                 7899***7.************8 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.088
   PF04255.9   8 lgGkPvI 14 
                 +gGkP++
  MMETSP0890-20130614|2627_1 159 CGGKPCV 165
                 9*****7 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 1.4
   PF04255.9  33 sveeiledYPsLtred 48 
                  v+ +l+ Y +L++  
  MMETSP0890-20130614|2627_1 224 KVAVVLKKY-HLDHLM 238
                 445566666.465555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1006  (0.073581); expected 273.4 (0.02)
Passed bias filter:                      598  (0.043739); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.42s 00:00:01.07 Elapsed: 00:00:00.82
# Mc/sec: 794.89
//
Query:       MMETSP0890-20130614|2631_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.84    9.5   4.0        2.3    8.1   1.6    2.1  2  PF12860.2 PAS fold


Domain annotation for each model (and alignments):
>> PF12860.2  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.6   0.00017       2.3      30      75 ..      33      80 ..      28     108 .. 0.69
   2 ?    2.2   0.8     0.011   1.5e+02      47      81 ..      78     113 ..      72     126 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00017
   PF12860.2 30 lpeelvqvgvpfeellrynaergefg..pgdveaeverrlaalragep 75
                l  e+v vg  ++e+++ na++ e++    ++e +v++r + ++a+++
  MMETSP0890-20130614|2631_1 33 LAVEVVAVGLAVSEFIERNARERELEvaLSEAEVQVAERSRIITARNA 80
                567899***************999996545566666666654444332 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.011
   PF12860.2  47 ynaergefg..pgdveaeverrlaalragephsfere 81 
                  nae+++ +  +++ ++++e+r+aa+r+ e+ +++r+
  MMETSP0890-20130614|2631_1  78 RNAEKEAAAaaKQAEREKIESRIAAARE-EELRVQRN 113
                 4455544444345566778888876655.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1286  (0.0940609); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.46s 00:00:00.94 Elapsed: 00:00:00.92
# Mc/sec: 346.43
//
Query:       MMETSP0890-20130614|2633_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-72  237.6   0.0      9e-22   76.2   0.0    3.0  4  PF13475.1  Domain of unknown function (DUF4116)
    6.2e-07   28.9   0.1        1.1    8.9   0.0    4.0  4  PF07892.6  Protein of unknown function (DUF1667)
    0.00013   22.0   0.2        5.5    7.1   0.0    3.9  4  PF09575.5  Small spore protein J (Spore_SspJ)
     0.0091   14.6   0.0       0.98    8.0   0.0    2.5  3  PF06007.6  Phosphonate metabolism protein PhnJ
  ------ inclusion threshold ------
      0.011   15.4   0.0        2.7    7.7   0.0    2.9  2  PF08678.5  Rsbr N terminal
      0.033   13.8   0.1        3.4    7.3   0.0    2.6  2  PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
      0.038   13.8   0.0        6.6    6.5   0.0    2.5  2  PF01232.18 Mannitol dehydrogenase Rossmann domain
       0.09   12.6   0.3         35    4.2   0.0    3.0  3  PF12310.3  Transcription factor protein N terminal


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   5.6e-23   9.6e-20       1      49 []       3      51 ..       3      51 .. 0.99
   2 !   50.6   0.0   4.9e-17   8.4e-14      12      49 .]      39      76 ..      38      76 .. 0.95
   3 !   76.2   0.0   5.3e-25     9e-22       1      49 []      53     101 ..      53     101 .. 0.99
   4 !   53.1   0.0   8.6e-18   1.5e-14       1      34 [.      78     111 ..      78     112 .] 0.98

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 5.6e-23
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrEivl+av+++g+al+y+seeL+ D+eivl+Av  +g++l+yas eL+
  MMETSP0890-20130614|2633_1  3 DREIVLAAVTQFGYALEYASEELQDDREIVLAAVTVCGYPLKYASSELK 51
                9**********************************************97 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 4.9e-17
   PF13475.1 12 ngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                +g+ lky+s+eLknD+e+vl Av qng+al+yas eL+
  MMETSP0890-20130614|2633_1 39 CGYPLKYASSELKNDREFVLTAVTQNGNALKYASQELK 76
                57779*******************************97 PP

  == domain 3    score: 76.2 bits;  conditional E-value: 5.3e-25
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrE+vl av++ng+alky+s eLknD+eivl Av qng+al+yas eL+
  MMETSP0890-20130614|2633_1  53 DREFVLTAVTQNGNALKYASQELKNDREIVLTAVTQNGYALEYASQELK 101
                 9**********************************************97 PP

  == domain 4    score: 53.1 bits;  conditional E-value: 8.6e-18
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAv 34 
                 DrEivl av++ng+al+y+s eLknD+eivl+Av
  MMETSP0890-20130614|2633_1  78 DREIVLTAVTQNGYALEYASQELKNDREIVLAAV 111
                 9********************************9 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0027       4.6       4      27 ..      18      41 ..      16      47 .. 0.86
   2 !    5.1   0.0    0.0091        16       5      27 ..      44      66 ..      41      69 .. 0.87
   3 !    8.9   0.0   0.00062       1.1       4      26 ..      68      90 ..      63      94 .. 0.87
   4 !    5.6   0.0    0.0064        11       4      22 ..      93     111 ..      90     112 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0027
   PF07892.6  4 eeYakkeltnpkriltstVkvegg 27
                 eYa +el++ + i+ + V v g 
  MMETSP0890-20130614|2633_1 18 LEYASEELQDDREIVLAAVTVCGY 41
                69*****************99775 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0091
   PF07892.6  5 eYakkeltnpkriltstVkvegg 27
                +Ya +el+n +  + + V  +g 
  MMETSP0890-20130614|2633_1 44 KYASSELKNDREFVLTAVTQNGN 66
                8****************998776 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00062
   PF07892.6  4 eeYakkeltnpkriltstVkveg 26
                 +Ya +el+n + i+ + V  +g
  MMETSP0890-20130614|2633_1 68 LKYASQELKNDREIVLTAVTQNG 90
                68****************98766 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0064
   PF07892.6   4 eeYakkeltnpkriltstV 22 
                  eYa +el+n + i+ + V
  MMETSP0890-20130614|2633_1  93 LEYASQELKNDREIVLAAV 111
                 69*************9887 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.01        18      22      33 ..      17      28 ..      10      30 .. 0.89
   2 ?   -0.2   0.0       0.6     1e+03      23      33 ..      43      53 ..      38      54 .. 0.78
   3 ?    4.0   0.0     0.031        53      21      33 ..      66      78 ..      60      80 .. 0.88
   4 !    7.1   0.0    0.0032       5.5      22      33 ..      92     103 ..      85     105 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.01
   PF09575.5 22 aLEdAgkaLkgD 33
                aLE A+++L++D
  MMETSP0890-20130614|2633_1 17 ALEYASEELQDD 28
                9**********9 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.6
   PF09575.5 23 LEdAgkaLkgD 33
                L  A+ +Lk+D
  MMETSP0890-20130614|2633_1 43 LKYASSELKND 53
                45688999988 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.031
   PF09575.5 21 gaLEdAgkaLkgD 33
                 aL  A+++Lk+D
  MMETSP0890-20130614|2633_1 66 NALKYASQELKND 78
                58999******99 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0032
   PF09575.5  22 aLEdAgkaLkgD 33 
                 aLE A+++Lk+D
  MMETSP0890-20130614|2633_1  92 ALEYASQELKND 103
                 8*********99 PP

>> PF06007.6  Phosphonate metabolism protein PhnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   2.1e+02      19      40 ..       4      25 ..       2      28 .. 0.89
   2 !    8.0   0.0   0.00057      0.98       5      41 ..      12      51 ..       8      63 .. 0.79
   3 !    4.4   0.0    0.0072        12      16      40 ..      76     100 ..      62     105 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.12
   PF06007.6 19 rrallkavaiPGyqvPfasrem 40
                r  +l av+  Gy + +as e+
  MMETSP0890-20130614|2633_1  4 REIVLAAVTQFGYALEYASEEL 25
                667899*************997 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00057
   PF06007.6  5 ynfayldeqakrei...rrallkavaiPGyqvPfasremP 41
                ++f+y  e+a  e+   r  +l av++ Gy + +as e+ 
  MMETSP0890-20130614|2633_1 12 TQFGYALEYASEELqddREIVLAAVTVCGYPLKYASSELK 51
                567777777777764447789***************9986 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0072
   PF06007.6  16 reirrallkavaiPGyqvPfasrem 40 
                 ++ r  +l av+  Gy + +as+e+
  MMETSP0890-20130614|2633_1  76 KNDREIVLTAVTQNGYALEYASQEL 100
                 4558889****************97 PP

>> PF08678.5  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.073   1.2e+02      67      92 ..      11      36 ..       5      39 .. 0.86
   2 ?    7.7   0.0    0.0016       2.7      63      98 ..      56      92 ..      54     107 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.073
   PF08678.5 67 ivqlGlpLklltkgLqvfrkvvyekm 92
                + q G  L+++++ Lq  r++v++++
  MMETSP0890-20130614|2633_1 11 VTQFGYALEYASEELQDDREIVLAAV 36
                5699************9999988765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0016
   PF08678.5 63 faekiv.qlGlpLklltkgLqvfrkvvyekmndekvk 98
                f+  +v q+G  Lk++++ L+  r++v+++++++  +
  MMETSP0890-20130614|2633_1 56 FVLTAVtQNGNALKYASQELKNDREIVLTAVTQNGYA 92
                555554389********************99998744 PP

>> PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.024        41      80     104 ..      18      43 ..      10      44 .. 0.89
   2 ?    7.3   0.0     0.002       3.4      78     104 ..      66      93 ..      58     102 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.024
   PF09837.4  80 laqafeaLer.adlVlgpaeDGGYyL 104
                 l+ a e+L++  ++Vl + + +GY L
  MMETSP0890-20130614|2633_1  18 LEYASEELQDdREIVLAAVTVCGYPL 43 
                 78899*****88************65 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.002
   PF09837.4  78 ellaqafeaLer.adlVlgpaeDGGYyL 104
                 + l+ a ++L++  ++Vl + ++ GY L
  MMETSP0890-20130614|2633_1  66 NALKYASQELKNdREIVLTAVTQNGYAL 93 
                 67999*******88************97 PP

>> PF01232.18  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.24   4.1e+02      94     118 ..       5      32 ..       2      39 .. 0.79
   2 ?    6.5   0.0    0.0039       6.6      92     118 ..      78     107 ..      72     112 .] 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.24
                 -EEEE------..B-.T---B-TTSHHH CS
  PF01232.18  94 rivsltvtekG..id.atgeletdlpai 118
                 +iv  +vt+ G  ++ a++el++d + +
  MMETSP0890-20130614|2633_1   5 EIVLAAVTQFGyaLEyASEELQDDREIV 32 
                 6899999999998888999888887655 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0039
                 T--EEEE------..B-.T---B-TTSHHH CS
  PF01232.18  92 eirivsltvtekG..id.atgeletdlpai 118
                 + +iv ++vt++G  ++ a++el++d + +
  MMETSP0890-20130614|2633_1  78 DREIVLTAVTQNGyaLEyASQELKNDREIV 107
                 568***********9999999999987765 PP

>> PF12310.3  Transcription factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16   2.8e+02       4      24 ..      10      30 ..       7      42 .. 0.77
   2 ?    3.8   0.0     0.029        49       3      23 ..      59      79 ..      57      84 .. 0.84
   3 ?    4.2   0.0      0.02        35       3      23 ..      84     104 ..      82     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.16
   PF12310.3  4 vvqkkelvfefasngvddeeq 24
                +v + + ++e+as++ +d  +
  MMETSP0890-20130614|2633_1 10 AVTQFGYALEYASEELQDDRE 30
                677788899999999866554 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.029
   PF12310.3  3 avvqkkelvfefasngvddee 23
                ++v ++++++++as++ ++  
  MMETSP0890-20130614|2633_1 59 TAVTQNGNALKYASQELKNDR 79
                68999**********997765 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.02
   PF12310.3   3 avvqkkelvfefasngvddee 23 
                 ++v +++ ++e+as++ ++  
  MMETSP0890-20130614|2633_1  84 TAVTQNGYALEYASQELKNDR 104
                 68999**********997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.34s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 367.66
//
Query:       MMETSP0890-20130614|2620_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.034   13.9   0.0    1.3  1  PF09716.5 Malarial early transcribed membrane protein (ETRAMP)


Domain annotation for each model (and alignments):
>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.5e-06     0.034      57      83 ..       3      29 ..       2      30 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-06
   PF09716.5 57 lisaiatalallvggalGlgiykkkkk 83
                l+ +i++++a lv+ga G+g+y+ ++k
  MMETSP0890-20130614|2620_1  3 LMKSIIAGVAFLVAGAHGFGMYTDERK 29
                6789******************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:01.09
# Mc/sec: 1094.85
//
Query:       MMETSP0890-20130614|2639_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.74    9.1   5.2        0.8    9.0   3.6    1.1  1  PF05084.8 Granule antigen protein (GRA6)
        9.9    6.5   9.7         16    5.8   6.7    1.5  1  PF10961.3 Protein of unknown function (DUF2763)


Domain annotation for each model (and alignments):
>> PF05084.8  Granule antigen protein (GRA6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6   0.00012       0.8     171     200 ..      10      39 ..       6      52 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00012
   PF05084.8 171 lrrrsrrspqepsgdgGandeGnnagnggn 200
                 + r srrs   psg gG+nd     g gg 
  MMETSP0890-20130614|2639_1  10 SLRPSRRSTGRPSGRGGGNDGPPGQGGGGR 39 
                 6799***************98766666664 PP

>> PF10961.3  Protein of unknown function (DUF2763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.7    0.0024        16      39      81 ..       1      48 [.       1      61 [] 0.50

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0024
   PF10961.3 39 llspevekarrknssskkkiddgr.....GgpgapgGgrrlgrigggg 81
                +++pe+++++ + s  ++ +  gr     G+pg++gGgr+  ri+g g
  MMETSP0890-20130614|2639_1  1 MFDPESTHHSLRPSRRSTGRPSGRgggndGPPGQGGGGRPKPRIRGIG 48
                666666666655555544444444001114556666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.78
# Mc/sec: 187.41
//
Query:       MMETSP0890-20130614|2632_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-14   53.5   0.0    2.7e-14   52.8   0.0    1.4  1  PF00069.20 Protein kinase domain
    2.8e-06   26.5   0.0    4.9e-06   25.7   0.0    1.5  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0     4e-18   2.7e-14     137     260 .]       2     151 ..       1     151 [. 0.81

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 4e-18
                 EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST.....HHHHHHHHHCCCHHTTS--GGGGCSHHH..........................HHHHHHHHHHT-SS.GGGS--HHHHHTSGGH CS
  PF00069.20 137 lkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge.....seedqleliekilkkkleedepksssks..........................eelkdlikkllekd.pakRltaeeilkhpwl 260
                 +ki+DFGl+    k+ + +t++vg++ + APE+l ++ +   k+DvWs+G ++ e++ g++ f ++        d+++++++   +++++ e +    +                           e+++l+ + l+ d  ++R++++ ++ +pwl
  MMETSP0890-20130614|2632_1   2 VKICDFGLS---LKPATLCTDFVGSPGFFAPEILIERAYNAFKADVWSFGAVCLETFIGTPAFGKTwlqayGVLDSRSVFAQAVANSIQSLETNN---EiffraaavtnasltkenqlasqeqivYEFRHLLMQALDLDwRKSRVSIDTLVATPWL 151
                 79*******...68*********************9***********************999998888888555555555555554443333322...1345666778888888889999999999999999999999945679999999999996 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.1e-10   4.9e-06     141     207 ..       1      61 [.       1     146 [. 0.85

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7.1e-10
                 EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEE.HHHHHHH---HHHHHHTTT-GTTT CS
  PF07714.12 141 vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEiftlgespyp 207
                 +vki+DfGL+ +       +  ++   +  ++apE+l e+ ++  k+DvWsfG ++ E f    +p  
  MMETSP0890-20130614|2632_1   1 MVKICDFGLSLKP-----ATLCTDFVGSPGFFAPEILIERAYNaFKADVWSFGAVCLETFIG--TPAF 61 
                 59********988.....556677788999******999997637*************9973..4544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.39s 00:00:01.25 Elapsed: 00:00:01.14
# Mc/sec: 1066.90
//
Query:       MMETSP0890-20130614|2637_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-11   42.8   0.0      4e-09   36.1   0.0    3.0  3  PF13041.1  PPR repeat family
    3.7e-10   39.1  11.4     0.0004   20.3   0.0    7.7  8  PF13812.1  Pentatricopeptide repeat domain
    7.8e-09   34.7   0.0     0.0025   17.1   0.0    3.5  3  PF12854.2  PPR repeat
    3.8e-07   29.5   0.6      0.032   14.0   0.0    5.8  7  PF01535.15 PPR repeat
     0.0098   15.9   0.6       0.44   10.7   0.1    3.4  2  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.013   15.0   1.3      0.025   14.1   0.2    1.9  2  PF08625.6  Utp13 specific WD40 associated domain
      0.037   13.6   0.1        7.2    6.3   0.0    2.9  2  PF11213.3  Protein of unknown function (DUF3006)


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.04        77      20      46 ..     256     284 ..     237     286 .. 0.78
   2 ?   -4.0   0.0       6.9   1.3e+04      25      34 ..     310     319 ..     309     320 .. 0.83
   3 !   36.1   0.0   2.1e-12     4e-09       2      48 ..     322     368 ..     321     370 .. 0.96

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.04
   PF13041.1  20 eeAfklfneMkkrgi..kPnvyTYsilik 46 
                 + A+ l+++Mk  g+  +    TY+ l++
  MMETSP0890-20130614|2637_1 256 RTAMLLWKKMKTDGLgnSIPRATYNALLH 284
                 56888999999988766778899999986 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 6.9
   PF13041.1  25 lfneMkkrgi 34 
                 +++eM +rgi
  MMETSP0890-20130614|2637_1 310 ILHEMAQRGI 319
                 6799999997 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 2.1e-12
   PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 nvv+YN+ +++l+++ ++ e ++l++ M++++i+P+++T+ + i+g 
  MMETSP0890-20130614|2637_1 322 NVVSYNIALNSLAEQARFGEVLELLERMESSKIQPTAVTFGTAIHGA 368
                 9*******************************************995 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.85   1.7e+03       7      27 ..     122     142 ..     118     143 .. 0.85
   2 ?   -2.2   0.0       3.3   6.5e+03       8      24 ..     155     171 ..     149     177 .. 0.81
   3 ?   -1.7   0.0       2.2   4.4e+03       7      24 ..     210     227 ..     205     230 .. 0.72
   4 !    7.4   0.0    0.0028       5.5       3      32 ..     239     270 ..     237     271 .. 0.93
   5 ?    2.1   0.3      0.13   2.6e+02      19      32 ..     301     319 ..     276     320 .. 0.51
   6 !   20.3   0.0     2e-07    0.0004       1      34 []     323     356 ..     323     356 .. 0.97
   7 ?    4.6   0.1     0.022        43       2      25 ..     359     382 ..     358     387 .. 0.91
   8 ?    3.3   0.0     0.057   1.1e+02       3      32 ..     397     430 ..     396     432 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.85
   PF13812.1   7 litalaksgrpeaAlalleeM 27 
                 l+  l+k+   ++Al++++ M
  MMETSP0890-20130614|2637_1 122 LACSLVKARKDQQALTAVDAM 142
                 67788999999******9999 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.3
   PF13812.1   8 italaksgrpeaAlall 24 
                 i a+++ ++ +++++ll
  MMETSP0890-20130614|2637_1 155 IVAASRLNDAKKVRQLL 171
                 67889999999998886 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.2
   PF13812.1   7 litalaksgrpeaAlall 24 
                  ++ l k+g++   + +l
  MMETSP0890-20130614|2637_1 210 ALKVLGKAGDFRTPFSVL 227
                 588999***997655555 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0028
   PF13812.1   3 tyntlitalaksgrpea..AlalleeMeqqgv 32 
                 +y + i a+ +   p+   A+ l++ M+  g+
  MMETSP0890-20130614|2637_1 239 LYHAAIAACGRTKPPKGrtAMLLWKKMKTDGL 270
                 6999************************9886 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.13
   PF13812.1  19 a.....AlalleeMeqqgv 32 
                 +       a+l+eM q+g+
  MMETSP0890-20130614|2637_1 301 RagtnaTTAILHEMAQRGI 319
                 1333324889999999886 PP

  == domain 6    score: 20.3 bits;  conditional E-value: 2e-07
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 v++yn+ ++ la++ r+ ++l+lle+Me+++++P
  MMETSP0890-20130614|2637_1 323 VVSYNIALNSLAEQARFGEVLELLERMESSKIQP 356
                 68*****************************998 PP

  == domain 7    score: 4.6 bits;  conditional E-value: 0.022
   PF13812.1   2 etyntlitalaksgrpeaAlalle 25 
                 +t+ t i ++a++++ +aA +ll+
  MMETSP0890-20130614|2637_1 359 VTFGTAIHGAARANNSAAAVELLR 382
                 899****************99986 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.057
   PF13812.1   3 tyntlitalaksgrpea....AlalleeMeqqgv 32 
                 ++ + + a+ + ++ ++    A+ ++  M + +v
  MMETSP0890-20130614|2637_1 397 SFGAALEACTRDPDAAQaaaaAQNVVQIMCDTNV 430
                 6778899999999977655557999999998887 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.5   9.7e+02       9      15 ..     278     284 ..     277     285 .. 0.87
   2 !   13.2   0.0   2.1e-05     0.041       2      34 .]     318     350 ..     317     350 .. 0.94
   3 !   17.1   0.0   1.3e-06    0.0025       3      31 ..     354     382 ..     352     383 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.5
   PF12854.2   9 TYNtLId 15 
                 TYN L++
  MMETSP0890-20130614|2637_1 278 TYNALLH 284
                 9****97 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.1e-05
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 G+  +vv+YN+ +++l    r  e +ell++Me
  MMETSP0890-20130614|2637_1 318 GIGLNVVSYNIALNSLAEQARFGEVLELLERME 350
                 7778****************************7 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1.3e-06
   PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvelld 31 
                 ++P++vT+ t I+G  ra++   Avell+
  MMETSP0890-20130614|2637_1 354 IQPTAVTFGTAIHGAARANNSAAAVELLR 382
                 79*************************97 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.8   1.3e+04       9      20 ..      28      39 ..      27      39 .. 0.81
   2 ?   -1.1   0.0       1.1   2.2e+03       8      24 ..     212     228 ..     210     230 .. 0.80
   3 ?    3.1   0.0     0.052     1e+02      18      31 .]     257     270 ..     254     270 .. 0.86
   4 ?   -0.4   0.0      0.65   1.3e+03       2       9 ..     278     285 ..     277     286 .. 0.87
   5 ?   -1.8   0.0       1.8   3.5e+03      22      31 .]     310     319 ..     309     319 .. 0.87
   6 !   14.0   0.0   1.7e-05     0.032       1      30 [.     324     353 ..     324     354 .. 0.95
   7 ?    4.0   0.0     0.026        50       1      24 [.     359     382 ..     359     383 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.8
  PF01535.15  9 gyckaGkleeAl 20
                g+++  ++eeA+
  MMETSP0890-20130614|2637_1 28 GHGSLSQVEEAI 39
                788889999995 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.1
  PF01535.15   8 sgyckaGkleeAlelfk 24 
                 ++++kaG+++  +++++
  MMETSP0890-20130614|2637_1 212 KVLGKAGDFRTPFSVLD 228
                 6799****998887775 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.052
  PF01535.15  18 eAlelfkeMkekGv 31 
                  A+ l+k+Mk +G+
  MMETSP0890-20130614|2637_1 257 TAMLLWKKMKTDGL 270
                 5999******9996 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.65
  PF01535.15   2 tynslIsg 9  
                 tyn+l+++
  MMETSP0890-20130614|2637_1 278 TYNALLHC 285
                 9****986 PP

  == domain 5    score: -1.8 bits;  conditional E-value: 1.8
  PF01535.15  22 lfkeMkekGv 31 
                 +++eM ++G+
  MMETSP0890-20130614|2637_1 310 ILHEMAQRGI 319
                 799****997 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 1.7e-05
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekG 30 
                 v+yn+ +++++   ++ e+lel+++M+++ 
  MMETSP0890-20130614|2637_1 324 VSYNIALNSLAEQARFGEVLELLERMESSK 353
                 89************************9986 PP

  == domain 7    score: 4.0 bits;  conditional E-value: 0.026
  PF01535.15   1 vtynslIsgyckaGkleeAlelfk 24 
                 vt+ + I+g ++a++   A+el++
  MMETSP0890-20130614|2637_1 359 VTFGTAIHGAARANNSAAAVELLR 382
                 89*******************986 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00022      0.44      18      48 ..     363     391 ..     354     393 .. 0.88
   2 ?    1.2   0.0      0.22   4.3e+02      26      46 ..     416     436 ..     401     442 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00022
   PF13857.1  18 tpLhlAakggalevvrlLlapgadlnlrdsd 48 
                 t++h Aa+++++ ++ +Ll  +a+++ + +d
  MMETSP0890-20130614|2637_1 363 TAIHGAARANNSAAAVELL--RANIKYCAND 391
                 9******************..9999988776 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.22
   PF13857.1  26 ggalevvrlLlapgadlnlrd 46 
                 + a++vv+++++ ++dl  r+
  MMETSP0890-20130614|2637_1 416 AAAQNVVQIMCDTNVDLERRE 436
                 4599*******9999988776 PP

>> PF08625.6  Utp13 specific WD40 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.3e-05     0.025      10      69 ..     148     213 ..     141     216 .. 0.82
   2 ?   -3.7   0.0       3.9   7.6e+03      87     111 ..     321     345 ..     307     350 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
   PF08625.6  10 ekkYreAllLALsLdqparllkvlkavlk......leeeeesigseeieevikkLrkeqlerlLkf 69 
                 +++Yr+ ++ A +L+  +++ ++l ++l+      +++ +++ ++eei++++++L++++l+  Lk 
  MMETSP0890-20130614|2637_1 148 ARDYRSGIVAASRLNDAKKVRQLLLSALRkeqqaaAQKMKNQTNEEEIDTILSTLDERTLKFALKV 213
                 689*******************995555558887544444445899************99988876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.9
   PF08625.6  87 LsvllkslkaeeLlqveglkellea 111
                 L+v+  ++  ++L++ + + e+le 
  MMETSP0890-20130614|2637_1 321 LNVVSYNIALNSLAEQARFGEVLEL 345
                 5677777777777777766666664 PP

>> PF11213.3  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.019        38      23      42 ..     326     345 ..     321     358 .. 0.84
   2 ?    6.3   0.0    0.0037       7.2      11      66 ..     375     442 ..     370     444 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.019
   PF11213.3  23 ldiprslLpagakeGDvLei 42 
                 ++i ++ L ++a+ G vLe+
  MMETSP0890-20130614|2637_1 326 YNIALNSLAEQARFGEVLEL 345
                 89*****************9 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0037
   PF11213.3  11 lAvleveekekeldiprslLpagakeGDvLei..............aegaeveidpeeTearkkriedll 66 
                  A +e+   +  ++   ++Lp +a  G  Le               ++  +++ d     +r++rie+l+
  MMETSP0890-20130614|2637_1 375 AAAVELLRAN--IKYCANDLPGDASFGAALEActrdpdaaqaaaaaQNVVQIMCDTNVDLERRERIEELA 442
                 5666666666..88999***************99999999999998888999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.97
# Mc/sec: 1171.00
//
Query:       MMETSP0890-20130614|2642_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-82  277.5   0.0    1.7e-82  277.0   0.0    1.1  1  PF00850.14 Histone deacetylase domain
  ------ inclusion threshold ------
      0.086   12.4   0.1        0.7    9.4   0.0    2.2  2  PF10792.4  Protein of unknown function (DUF2605)
       0.12   12.4   0.1       0.53   10.3   0.0    2.0  2  PF09969.4  Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.0   0.0   3.8e-86   1.7e-82      10     305 ..       9     327 ..       2     328 .. 0.93

  Alignments for each domain:
  == domain 1    score: 277.0 bits;  conditional E-value: 3.8e-86
                 ..-TT-THHHHHHHHHHHH---GGGS---------HHHHHTTS-HHHHHHHHHHH.....HS----..------------HHHHHH----HHHHHHHH--------B--S------.....-TT------SS-HHHHH---TTT..........T-----EEEEE-SS------TTTTTT-TTEEEEEEEE........TT..SSST---TT----------EEEEEE----.--HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-TT----B-----HHHHHHHHHHHH----EEEB------TTTTTT---HHHHHH CS
  PF00850.14  10 k.hpespeRlsavlsllkekglleelevikpreatkeelllvhspeYleqleelasekeeelallg..lesdtplspgsleaallaagavieavdlvlegevrkafvairppGHHA.....ekdsasGFCllNnvaiaakyllk..........khglkrvlivDfDvHhGnGtqeifysdpsvltlSlHd........yeeefyPgtgaadevgegkgkgynlniplepgt.sdeeylkafekilkpllekfkpelvlvsaGfDalagDplgrlnlteegyaeltrdllelalakgkvvlvleGGYnlealaraalavlagl 305
                 + hpe+p R +a++++l+e+gll+ l+++k+r at+eell++h+++Yl+ +e++a+ ++++l++++   ++d+++++++++ a+la+g++ie + +++ g+  +a +a+rppGHH      ++++a GFC++N va  ak ++k             ++++livDfDvHhGnGtq+++++dp+++++S+H+        ++++fyPgtg+a evg  +++g+++n+p+++   +d+eyl+ ++++l p++++f pel+l+saGfDa++gDplg+++++++ + +l++ l ela    +v+lvleGGYnl++l +a  ++ ++l
  MMETSP0890-20130614|2642_1   9 EgHPERPARTRAIIDALEEEGLLSLLTRFKSRFATQEELLTFHTQNYLDAMERTATLNRRQLDKVErkYDDDVYINNSTFSCAKLAIGCSIESCARIMVGDCAHALAAVRPPGHHVggngcCAKRAAGFCFFNSVATCAKLASKgelicadgrrADPIDKILIVDFDVHHGNGTQALCWDDPKIMYFSVHRgfesksqwKQRTFYPGTGKAREVGGPNARGTIINCPWSEPGmGDREYLACWHRLLLPIAREFAPELILISAGFDAARGDPLGGCDVSNQTFGHLVKPLTELA----NVCLVLEGGYNLQNLGQAFSSCARVL 327
                 25*****************************************************99999999999878888*******************************************7666669********************99777777766546799*******************************666555556679*************99***********76544************************************************************....********************999887 PP

>> PF10792.4  Protein of unknown function (DUF2605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00015       0.7      10      51 ..      27      68 ..      19     100 .. 0.88
   2 ?   -0.2   0.0      0.15     7e+02      76      88 ..     244     256 ..     239     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
   PF10792.4 10 ktlLesLLeDfeyWFerseelLeteklsvlseeeqeallerv 51
                ++ L sLL  f+  F   eelL+ ++++ l++ e++a l+r 
  MMETSP0890-20130614|2642_1 27 EEGLLSLLTRFKSRFATQEELLTFHTQNYLDAMERTATLNRR 68
                566889*****************************9999884 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.15
   PF10792.4  76 mevlapWHkLvte 88 
                  e la WH+L++ 
  MMETSP0890-20130614|2642_1 244 REYLACWHRLLLP 256
                 578999****975 PP

>> PF09969.4  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.94   4.3e+03      38      58 ..      58      76 ..      20     107 .. 0.52
   2 ?   10.3   0.0   0.00012      0.53      78     115 ..     169     203 ..     149     206 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.94
   PF09969.4 38 eaekeleaeelkeeleeleeq 58
                 +e+  +a+ ++++l+++e++
  MMETSP0890-20130614|2642_1 58 AMER--TATLNRRQLDKVERK 76
                2222..123333333333333 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00012
   PF09969.4  78 egLvDFpalldgeevylCWklgEeeikfwHeleeGfag 115
                 +++vDF  ++ + +  lCW  ++++i+++ +++ Gf+ 
  MMETSP0890-20130614|2642_1 169 ILIVDFDVHHGNGTQALCW--DDPKIMYF-SVHRGFES 203
                 4689***************..899***98.55889875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.61
# Mc/sec: 1854.23
//
Query:       MMETSP0890-20130614|2641_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.78
# Mc/sec: 1840.28
//
Query:       MMETSP0890-20130614|2646_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   17.9   0.1     0.0022   17.2   0.1    1.3  1  PF06143.6  Baculovirus 11 kDa family
  ------ inclusion threshold ------
      0.028   14.1   0.6      0.028   14.1   0.4    1.6  2  PF13314.1  Domain of unknown function (DUF4083)
       0.18   11.9   0.6       0.34   11.0   0.4    1.4  1  PF00895.15 ATP synthase protein 8
        1.9    8.3  11.2        5.1    7.0   7.8    1.7  1  PF00053.19 Laminin EGF-like (Domains III and V)


Domain annotation for each model (and alignments):
>> PF06143.6  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   6.3e-07    0.0022      37      74 ..     144     181 ..     136     193 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.3e-07
   PF06143.6  37 vLvicglvvfvvivlfilLlvvilknaeaeeaekekre 74 
                 ++v   +v+++++vlf lL+++i++++   + e +k +
  MMETSP0890-20130614|2646_1 144 IIVALFFVLLIIVVLFPLLIFQIMTTSARLKNEDSKQQ 181
                 45555678889999999*******98877666655544 PP

>> PF13314.1  Domain of unknown function (DUF4083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.5   8.7e+03      16      21 ..      17      22 ..      12      25 .. 0.50
   2 ?   14.1   0.4   8.1e-06     0.028      10      41 ..     146     177 ..     134     182 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.5
   PF13314.1 16 ivlivi 21
                 ++i++
  MMETSP0890-20130614|2646_1 17 RLIIIA 22
                333333 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 8.1e-06
   PF13314.1  10 ilviilivlivisftlfiRrllqnsaakkqds 41 
                 ++   ++++iv++f l+i  ++ +sa+ k+++
  MMETSP0890-20130614|2646_1 146 VALFFVLLIIVVLFPLLIFQIMTTSARLKNED 177
                 345678999******************99875 PP

>> PF00895.15  ATP synthase protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   9.9e-05      0.34      12      50 ..     146     184 ..     144     187 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.9e-05
  PF00895.15  12 iflflwlsllvvlqlkilkhnprnspakktsdkkkttpw 50 
                 ++lf++l ++vvl ++++++++++s   k++d k+++++
  MMETSP0890-20130614|2646_1 146 VALFFVLLIIVVLFPLLIFQIMTTSARLKNEDSKQQNAS 184
                 455555555555555555556777777888888888876 PP

>> PF00053.19  Laminin EGF-like (Domains III and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.8    0.0015       5.1      13      41 ..      47      82 ..      36      91 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0015
                B-S.......----BSBSTTEE---S-EE----B-T CS
  PF00053.19 13 Cds.......stgqClCkenveGrkCdrCkpgyygl 41
                Cd        +tg+C C+   eG++C+  +   +  
  MMETSP0890-20130614|2646_1 47 CDLkfgtptkTTGECMCRYRCEGSRCESAQGFIWYS 82
                77777777779****************977776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1191  (0.0871123); expected 273.4 (0.02)
Passed bias filter:                      778  (0.0569046); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.67
# Mc/sec: 722.48
//
Query:       MMETSP0890-20130614|2644_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-05   22.1   2.2    0.00016   21.3   1.6    1.4  1  PF00098.18 Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.6   1.2e-08   0.00016       2      17 ..     122     137 ..     121     137 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.2e-08
                 --S------------S CS
  PF00098.18   2 kCynCGkeGHlardCp 17 
                  C+ C+++GH++++Cp
  MMETSP0890-20130614|2644_1 122 VCFACNQPGHRKNECP 137
                 7**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:00.88
# Mc/sec: 1761.87
//
Query:       MMETSP0890-20130614|2657_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00029   20.8   0.0    0.00057   19.8   0.0    1.4  1  PF00665.21 Integrase core domain
  ------ inclusion threshold ------
      0.068   12.6   0.0       0.19   11.2   0.0    1.7  1  PF13976.1  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.3e-08   0.00057       9     111 ..     246     350 ..     240     353 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.3e-08
                 EEEEEE..EET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSH......HHHHHHHH---EEE----S-TTT---HHH CS
  PF00665.21   9 wqiDvt..pgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngseftsk......afeallkelgikhkftrpyrpqdngkvEr 111
                 +++Dv   +++   + +ka  ++   +   + ++++l+d  + ++++   + a++   g  pk++++D+  ++  +      +f++ll e g+ +k ++p++ +  g++E 
  MMETSP0890-20130614|2657_1 246 LHMDVHgpYID---GINKAKYFVSYTTNDSYSFVYFLRDI-DEDSLITSYK-AATLETGT-PKVIRMDRNQTLIKNdpiiltKFKNLLFEQGVALKISPPGHQEMDGVAEK 350
                 78998874444...333566666667777899********.9999999999.55555554.9***********977*********************************96 PP

>> PF13976.1  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.8e-05      0.19       8      45 ..     151     194 ..     145     205 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.8e-05
   PF13976.1   8 ssnan.ssvslsk.....nkssiwlWHrRLGHpsfsrlkkLfkk 45 
                 +++   +s+++++      k s++  H+R+G ++++++k  ++k
  MMETSP0890-20130614|2657_1 151 NNVVTpTSSVCAStpalpQKVSAETAHYRFGCINNKYVKATISK 194
                 44433134444444656558******************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.80
# Mc/sec: 1836.21
//
Query:       MMETSP0890-20130614|2670_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.7   0.0       0.02   14.2   0.0    1.3  1  PF10358.4 N-terminal C2 in EEIG1 and EHBP1 proteins


Domain annotation for each model (and alignments):
>> PF10358.4  N-terminal C2 in EEIG1 and EHBP1 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.5e-06      0.02      77     142 ..     131     192 ..      99     193 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-06
   PF10358.4  77 kltlsvysetkkgkkkvlGkvelnLaeYanedeeptterlllkkskkvnsilslsiqlkllrgdyd 142
                 +l+++v++ t+  +++ +G+ +l+L++Y   + ++tt ++ +    + ++i+ + i +++l +d+d
  MMETSP0890-20130614|2670_1 131 ILKVEVFNGTPGAPNSRIGQFDLDLSKYREPN-RTTTTEIEIP---NTKAIVRILIGCTPLQDDDD 192
                 6788999999888889************9976.4444444443...34799999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 986.19
//
Query:       MMETSP0890-20130614|2671_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-13   48.1   1.7      8e-11   41.3   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.3e-10   40.9   0.0    1.4e-10   40.8   0.0    1.1  1  PF13424.1  Tetratricopeptide repeat
    9.6e-07   28.0   0.5    1.2e-06   27.7   0.3    1.1  1  PF00515.23 Tetratricopeptide repeat
    2.9e-05   23.5   0.3    3.7e-05   23.1   0.2    1.2  1  PF07719.12 Tetratricopeptide repeat
    5.4e-05   22.6   0.0    5.9e-05   22.5   0.0    1.2  1  PF13414.1  TPR repeat
    5.8e-05   22.4   0.0    6.7e-05   22.2   0.0    1.1  1  PF13176.1  Tetratricopeptide repeat
    0.00073   19.0   0.1    0.00091   18.7   0.1    1.1  1  PF13181.1  Tetratricopeptide repeat
     0.0023   17.8   0.1       0.12   12.4   0.1    2.1  2  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.3   0.0      0.012   16.1   0.0    1.2  1  PF13428.1  Tetratricopeptide repeat
      0.056   14.0   0.0      0.065   13.8   0.0    1.1  1  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0043       5.9      33      42 .]       2      11 ..       1      11 [. 0.88
   2 !   41.3   0.1   5.8e-14     8e-11       2      40 ..      13      51 ..      12      52 .] 0.95

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0043
   PF13374.1 33 rrllGddHPd 42
                ++ lG++HP+
  MMETSP0890-20130614|2671_1  2 EKTLGPNHPH 11
                7899*****6 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 5.8e-14
   PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGddH 40
                a  lnnLA +l ++ +y+eA +l+e+a +i ++ lG++H
  MMETSP0890-20130614|2671_1 13 AVGLNNLAQLLGNQAKYDEAKPLYERAIEIGEKTLGPNH 51
                5569*********************************** PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     1e-13   1.4e-10      36      78 .]       3      45 ..       1      51 [. 0.94

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1e-13
   PF13424.1 36 relgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                ++lg++hp +a+ lnnla+l+  + +ydeA++++e+A+ei ek
  MMETSP0890-20130614|2671_1  3 KTLGPNHPHVAVGLNNLAQLLGNQAKYDEAKPLYERAIEIGEK 45
                689************************************9765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.3   8.6e-10   1.2e-06       1      30 [.      13      42 ..      13      45 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 8.6e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a  l+nl++++ ++ kydeA   ye+A+e+
  MMETSP0890-20130614|2671_1 13 AVGLNNLAQLLGNQAKYDEAKPLYERAIEI 42
                5689*************************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   2.7e-08   3.7e-05       3      30 ..      15      42 ..      13      45 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.7e-08
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAlel 30
                +l+nl++++ ++ +y+eA+ ++e+A+e+
  MMETSP0890-20130614|2671_1 15 GLNNLAQLLGNQAKYDEAKPLYERAIEI 42
                79************************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.3e-08   5.9e-05       3      32 ..      13      42 ..       4      52 .] 0.62

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 4.3e-08
   PF13414.1  3 AealkelGnalfkegdydeAieayekAlel 32
                A  l++l++ l ++ +ydeA  +ye+A+e+
  MMETSP0890-20130614|2671_1 13 AVGLNNLAQLLGNQAKYDEAKPLYERAIEI 42
                445566666666666666666666666665 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   4.9e-08   6.7e-05       2      31 ..      16      45 ..      15      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 4.9e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkd 31
                l+nLa+l  ++ +y++A  lyera+++ + 
  MMETSP0890-20130614|2671_1 16 LNNLAQLLGNQAKYDEAKPLYERAIEIGEK 45
                89*********************8877655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   6.6e-07   0.00091       4      30 ..      16      42 ..      13      46 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.6e-07
                TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                ++nl++++ +  +yd+Ak  +e+a+e+
  MMETSP0890-20130614|2671_1 16 LNNLAQLLGNQAKYDEAKPLYERAIEI 42
                79***********************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1     9e-05      0.12       9      33 ..       9      33 ..       6      34 .. 0.89
   2 ?    3.9   0.0     0.049        67       1       8 [.      35      42 ..      35      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9e-05
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P  a+ +nnLA+ll n+ +++eA+
  MMETSP0890-20130614|2671_1  9 HPHVAVGLNNLAQLLGNQAKYDEAK 33
                6777999****************97 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.049
   PF13431.1  1 lyekalel 8 
                lye+a+e+
  MMETSP0890-20130614|2671_1 35 LYERAIEI 42
                7*****97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   0.0   8.5e-06     0.012       4      33 ..      16      45 ..      12      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.5e-06
   PF13428.1  4 llalarallalGdpdeAiallrralalaPd 33
                l  la++l ++  +deA  l++ra++ + +
  MMETSP0890-20130614|2671_1 16 LNNLAQLLGNQAKYDEAKPLYERAIEIGEK 45
                5679*********************98765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-05     0.065       2      25 ..      18      41 ..      17      51 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-05
   PF13432.1  2 alArallraGdydeAlaaleaala 25
                 lA++l ++ +ydeA +++e+a++
  MMETSP0890-20130614|2671_1 18 NLAQLLGNQAKYDEAKPLYERAIE 41
                5899*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 166.15
//
Query:       MMETSP0890-20130614|2656_1  [L=1625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-60  198.8 144.3    4.1e-07   29.4   0.4   15.4 16  PF01839.18 FG-GAP repeat
      3e-26   91.4 100.0    7.7e-08   32.4   3.3   11.1 11  PF13517.1  Family description
    8.7e-06   25.1  29.0       0.73    9.1   0.0   11.2 12  PF12256.3  Insecticide toxin TcdB middle/N-terminal region
  ------ inclusion threshold ------
       0.32   10.6   0.0       0.95    9.0   0.0    1.7  1  PF04341.7  Protein of unknown function, DUF485
       0.51    8.8   1.7       0.83    8.1   1.2    1.2  1  PF03302.8  Giardia variant-specific surface protein


Domain annotation for each model (and alignments):
>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   5.2e+03       1      11 [.      60      70 ..      60      70 .. 0.91
   2 !   24.4   2.7   5.3e-09   1.4e-05       3      34 .]     105     133 ..     103     133 .. 0.90
   3 !   29.4   0.4   1.5e-10   4.1e-07       5      33 ..     183     212 ..     179     213 .. 0.91
   4 !   23.7   3.1   8.8e-09   2.4e-05       1      29 [.     250     276 ..     250     287 .. 0.81
   5 !   19.4   1.5   2.1e-07   0.00057       2      30 ..     329     358 ..     328     373 .. 0.73
   6 !   26.5   1.1   1.2e-09   3.4e-06       7      33 ..     402     429 ..     401     430 .. 0.83
   7 !   23.4   2.5   1.1e-08     3e-05       2      32 ..     457     493 ..     456     495 .. 0.81
   8 !   22.1   1.2   2.8e-08   7.7e-05       2      30 ..     528     561 ..     527     565 .. 0.73
   9 ?   -2.2   0.1       1.2   3.3e+03       2      12 ..     645     655 ..     644     655 .. 0.90
  10 ?    3.8   4.2     0.016        43       3      29 ..     686     709 ..     684     718 .. 0.72
  11 !   23.1   2.9   1.4e-08   3.8e-05       2      33 ..     748     780 ..     747     781 .. 0.80
  12 !   22.3   2.2   2.5e-08   6.9e-05       1      32 [.     813     842 ..     813     850 .. 0.78
  13 !   17.0   1.0   1.2e-06    0.0032       1      29 [.     883     909 ..     883     919 .. 0.78
  14 !   20.0   1.5   1.3e-07   0.00036       2      33 ..     951     984 ..     950     985 .. 0.83
  15 !   15.7   5.0   2.9e-06     0.008       2      33 ..    1014    1052 ..    1013    1053 .. 0.81
  16 !    7.1   0.1    0.0015         4       2      33 ..    1090    1120 ..    1089    1121 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.9
                ECECEEEE-TT CS
  PF01839.18  1 fgnsvavgDfn 11
                fg s ++gD+n
  MMETSP0890-20130614|2656_1 60 FGKSFTLGDMN 70
                78999****99 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 5.3e-09
                 ECEEEE-TT---S-EEEEETEECTCE.--EEEE CS
  PF01839.18   3 nsvavgDfnGDGrpDlavGpmggghn.Gavyvy 34 
                 n +++gD++GDG +Dl++    g+++  +vy++
  MMETSP0890-20130614|2656_1 105 NVASAGDVDGDGIDDLII----GAPGaRRVYIL 133
                 678999************....9**9999**96 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 1.5e-10
                 EEEE-TT---S-EEEEE.TEECTCE--EEE CS
  PF01839.18   5 vavgDfnGDGrpDlavG.pmggghnGavyv 33 
                  ++gD+nGDG++D+++G p++ +  G+vy+
  MMETSP0890-20130614|2656_1 183 STAGDLNGDGYDDVIIGvPNSKNKRGRVYI 212
                 5889*************99999999****8 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 8.8e-09
                 ECECEEEE.-TT---S-EEEEETEECTCE.- CS
  PF01839.18   1 fgnsvavg.DfnGDGrpDlavGpmggghn.G 29 
                 fg++va+g Df+GDG++Dl++     +++ G
  MMETSP0890-20130614|2656_1 250 FGSAVAGGfDFDGDGKDDLLIA----ADGyG 276
                 8********************5....44433 PP

  == domain 5    score: 19.4 bits;  conditional E-value: 2.1e-07
                 CECEEEE.-TT---S-EEEEE...TEECTCE..-- CS
  PF01839.18   2 gnsvavg.DfnGDGrpDlavG...pmggghn..Ga 30 
                 g+ va++ D+nGDG++D+ +G   +     n  Ga
  MMETSP0890-20130614|2656_1 329 GSDVAAVdDMNGDGFDDICIGaarY-----NriGA 358
                 67788888************73221.....22444 PP

  == domain 6    score: 26.5 bits;  conditional E-value: 1.2e-09
                 EE-TT---S-EEEEE.TEECTCE--EEE CS
  PF01839.18   7 vgDfnGDGrpDlavG.pmggghnGavyv 33 
                 vgDfnGDG++Dl++G p+++   G++y+
  MMETSP0890-20130614|2656_1 402 VGDFNGDGFADLVIGgPGQRHRRGGAYI 429
                 8*************95566666699997 PP

  == domain 7    score: 23.4 bits;  conditional E-value: 1.1e-08
                 CECEEEE.-TT---S-EEEEE....T.EECTCE--EE CS
  PF01839.18   2 gnsvavg.DfnGDGrpDlavG....p.mggghnGavy 32 
                 g sv+++ D++GDG++D++vG    + +g + +Gav+
  MMETSP0890-20130614|2656_1 457 GFSVSTAgDIDGDGLDDVLVGafttEpNGLAISGAVF 493
                 66777777*************9876268888888875 PP

  == domain 8    score: 22.1 bits;  conditional E-value: 2.8e-08
                 CECEEEE.-TT---S-EEEEE.T..EECTCE.-- CS
  PF01839.18   2 gnsvavg.DfnGDGrpDlavG.p..mggghn.Ga 30 
                 g+sv+++ Dfn+DG +Dl vG +  + + ++ G 
  MMETSP0890-20130614|2656_1 528 GYSVSAAgDFNNDGIDDLTVGaFrsSAHVPSsGI 561
                 89999999************75234555555555 PP

  == domain 9    score: -2.2 bits;  conditional E-value: 1.2
                 CECEEEE-TT- CS
  PF01839.18   2 gnsvavgDfnG 12 
                 +++++++D nG
  MMETSP0890-20130614|2656_1 645 TTAITLADTNG 655
                 789*******9 PP

  == domain 10    score: 3.8 bits;  conditional E-value: 0.016
                 ECEEEE-TT---S-EEEEETEECTCE.- CS
  PF01839.18   3 nsvavgDfnGDGrpDlavGpmggghn.G 29 
                 + + +gD++GD  +D ++     +++ G
  MMETSP0890-20130614|2656_1 686 SIALAGDVDGDFVDDAIL----ASDGfG 709
                 344556**********99....555543 PP

  == domain 11    score: 23.1 bits;  conditional E-value: 1.4e-08
                 CECEEEE-TT---S-EEEEE.TEECTCE--EEE CS
  PF01839.18   2 gnsvavgDfnGDGrpDlavG.pmggghnGavyv 33 
                 ++ +avgD+n DG+ D+a+G p+  g+ Gavyv
  MMETSP0890-20130614|2656_1 748 TTVAAVGDVNDDGYEDIALGaPSALGGRGAVYV 780
                 67899**************95544444489998 PP

  == domain 12    score: 22.3 bits;  conditional E-value: 2.5e-08
                 ECECEEEE-TT---S-EEEEETEECTCE..--EE CS
  PF01839.18   1 fgnsvavgDfnGDGrpDlavGpmggghn..Gavy 32 
                 fg+s++ +D+n DG++D+++G    +++  G+ y
  MMETSP0890-20130614|2656_1 813 FGSSISSADLNDDGYADILAG----APDavGSSY 842
                 9*******************6....444444433 PP

  == domain 13    score: 17.0 bits;  conditional E-value: 1.2e-06
                 ECECEEEE.-TT---S-EEEEETEECTCE.- CS
  PF01839.18   1 fgnsvavg.DfnGDGrpDlavGpmggghn.G 29 
                 fg+sva++ DfnGDG  D a     g+++ G
  MMETSP0890-20130614|2656_1 883 FGASVAGVgDFNGDGIEDAAF----GAPGaG 909
                 666777777***********9....665554 PP

  == domain 14    score: 20.0 bits;  conditional E-value: 1.3e-07
                 CECEEEE.-TT---S-EEEEETEECTCE..--EEE CS
  PF01839.18   2 gnsvavg.DfnGDGrpDlavGpmggghn..Gavyv 33 
                 g+s+a + D++GD ++D ++G ++g+++  Ga+y+
  MMETSP0890-20130614|2656_1 951 GASLAFAgDVDGDNFADFLIG-APGEDSenGAAYL 984
                 78999999************9.6666666788886 PP

  == domain 15    score: 15.7 bits;  conditional E-value: 2.9e-06
                  CECEEEE.-TT---S-EEEEE..T....EECTCE--EEE CS
  PF01839.18    2 gnsvavg.DfnGDGrpDlavG..p....mggghnGavyv 33  
                  g++va+g D+n DG +Dl++G  +    +  +++Ga+y+
  MMETSP0890-20130614|2656_1 1014 GSAVAGGgDINADGIDDLVLGadGalsdGTITSAGAAYI 1052
                  78899999************9873565677777788887 PP

  == domain 16    score: 7.1 bits;  conditional E-value: 0.0015
                  CECEEEE..-TT---S-EEEEETEECTCE.--EEE CS
  PF01839.18    2 gnsvavg..DfnGDGrpDlavGpmggghn.Gavyv 33  
                  g+ ++ g  D+n+D  +D+ +    g+++  ++y+
  MMETSP0890-20130614|2656_1 1090 GSILSFGsfDINNDEVDDIFI----GEPGiASAYI 1120
                  778888889************....8888777777 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   1.7e-05     0.046      31      61 .]      92     122 ..      79     122 .. 0.70
   2 !   22.5   4.5   3.6e-08   9.8e-05       1      61 []     111     198 ..     111     198 .. 0.63
   3 !   22.4   4.0   3.9e-08   0.00011       1      61 []     187     270 ..     187     270 .. 0.60
   4 !   20.0   4.1   2.1e-07   0.00057       1      61 []     259     348 ..     259     348 .. 0.66
   5 !   32.4   3.3   2.8e-11   7.7e-08       1      61 []     404     476 ..     404     476 .. 0.75
   6 !   10.4   0.3    0.0002      0.56      42      60 ..     528     546 ..     496     547 .. 0.79
   7 !    9.5   6.4   0.00041       1.1       1      60 [.     692     765 ..     692     766 .. 0.63
   8 !   19.0   3.5   4.3e-07    0.0012       1      60 [.     755     831 ..     755     832 .. 0.75
   9 !   15.0   5.7   7.8e-06     0.021       1      59 [.     821     901 ..     821     903 .. 0.58
  10 !    7.1   0.0    0.0023       6.2      47      61 .]     956     970 ..     933    1011 .. 0.78
  11 !   11.1   6.5   0.00013      0.36       1      61 []    1022    1110 ..    1022    1110 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-05
   PF13517.1  31 dvaetslgaggggtgvafgDldgDGdlDllv 61 
                  v  + ++++ g   + +gD+dgDG +Dl++
  MMETSP0890-20130614|2656_1  92 QVKGNIFDSYTGSNVASAGDVDGDGIDDLII 122
                 34445777777777899************96 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 3.6e-08
   PF13517.1   1 DldgDGdlDlvvagdgglrlylnng.............dGtftdvaetslgag..............gggtgvafgDldgDGdlDllv 61 
                 D+dgDG +Dl+++ +g+ r+y+  g             +G+f ++ +  + ++               g +  ++gDl+gDG++D+++
  MMETSP0890-20130614|2656_1 111 DVDGDGIDDLIIGAPGARRVYILFGtkdyrdfrrrladKGKFDFTVDAMPEDSilpiinsneddddfFGEMVSTAGDLNGDGYDDVII 198
                 9************8766555555541133333333333445555544433333666666667776655555699***********986 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 3.9e-08
   PF13517.1   1 DldgDGdlDlvva....gdgglrlylnngdGt....ftdvaetslgag..............gggtgva.fgDldgDGdlDllv 61 
                 Dl+gDG++D++++     + + r+y+  g  +      dv +  +g++                g++va   D+dgDG++Dll+
  MMETSP0890-20130614|2656_1 187 DLNGDGYDDVIIGvpnsKNKRGRVYIIYGGKNlccdTLDVKSELIGGQndrgfiitgsnvgdFFGSAVAgGFDFDGDGKDDLLI 270
                 9************88642566888887775543333224444433333355555554445332222344255**********86 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 2.1e-07
   PF13517.1   1 DldgDGdlDlvvagdgg.............lrl.ylnngdGtftdvaetslgag...............gggtg....vafgDldgDGdlDllv 61 
                 D+dgDG++Dl++a dg                + y  +   +f+d+a+ ++ ++                        +a+ D++gDG +D+++
  MMETSP0890-20130614|2656_1 259 DFDGDGKDDLLIAADGYgdskrqgaalllyG-VsYERKSEYSFNDFAAKGGKENpvgllitakdfsyppR---IgsdvAAVDDMNGDGFDDICI 348
                 9************554445667777766532.23455556677777776666656666666555554442...044558899**********86 PP

  == domain 5    score: 32.4 bits;  conditional E-value: 2.8e-11
   PF13517.1   1 DldgDGdlDlvvagdgg....lrlylnngdGtftdvaet.....slgag..gggtgv.afgDldgDGdlDllv 61 
                 D++gDG+ Dlv++g+g+       y+  g+ tf+ +++      +++a+    g++v ++gD+dgDG +D+lv
  MMETSP0890-20130614|2656_1 404 DFNGDGFADLVIGGPGQrhrrGGAYIVYGKSTFEAIEDFdvfleGVDAQesMAGFSVsTAGDIDGDGLDDVLV 476
                 9************75444556888999999****77764333334444444666666379***********98 PP

  == domain 6    score: 10.4 bits;  conditional E-value: 0.0002
   PF13517.1  42 ggtgvafgDldgDGdlDll 60 
                 g++  a+gD+++DG +Dl 
  MMETSP0890-20130614|2656_1 528 GYSVSAAGDFNNDGIDDLT 546
                 4445689**********95 PP

  == domain 7    score: 9.5 bits;  conditional E-value: 0.00041
   PF13517.1   1 DldgDGdlDlvvagdgglrlylnng.........dGtftdvaetslgag........gggtgvafgDldgDGdlDll 60 
                 D+dgD  +D ++a+dg  ++ ++ g         +G+++++ + ++  +        + +t +a+gD++ DG+ D++
  MMETSP0890-20130614|2656_1 692 DVDGDFVDDAILASDGFGYIVYGVGsdeswaddlSGSLSEIVS-GS--DatqfiasaDITTVAAVGDVNDDGYEDIA 765
                 9*************99999999888633333222333333322.11..1223333323334489***********97 PP

  == domain 8    score: 19.0 bits;  conditional E-value: 4.3e-07
   PF13517.1   1 DldgDGdlDlvva......gdgglrlylnngdG.tftdvaetslgag..........gggtgvafgDldgDGdlDll 60 
                 D++ DG+ D+ ++      g+g++++ +++ d  +++d ++ +lg++            g+++  +Dl+ DG++D+l
  MMETSP0890-20130614|2656_1 755 DVNDDGYEDIALGapsalgGRGAVYVVFGQSDFdNVVDLSTLTLGGEymmlmgmstdAFGSSISSADLNDDGYADIL 831
                 9***********98888755788999888876313445555555554577666665577778**************8 PP

  == domain 9    score: 15.0 bits;  conditional E-value: 7.8e-06
   PF13517.1   1 DldgDGdlDlvva.....gdgg..............lrl.ylnngdGtftdvaet.slgaggggtgva.fgDldgDGdlDl 59 
                 Dl+ DG+ D++++     g++               + + +ln  dG   + ++  s +++  g++va +gD++gDG  D 
  MMETSP0890-20130614|2656_1 821 DLNDDGYADILAGapdavGSSYavvyygsasaptsvVDVgLLNATDGIMIFYDASlSTDDSRFGASVAgVGDFNGDGIEDA 901
                 9************66555223333333334444333222455666665444433214444455555544**********97 PP

  == domain 10    score: 7.1 bits;  conditional E-value: 0.0023
   PF13517.1  47 afgDldgDGdlDllv 61 
                  +gD+dgD  +D+l+
  MMETSP0890-20130614|2656_1 956 FAGDVDGDNFADFLI 970
                 466777777777654 PP

  == domain 11    score: 11.1 bits;  conditional E-value: 0.00013
   PF13517.1    1 DldgDGdlDlvvagdgg............................lrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDllv 61  
                  D++ DG +Dlv++ dg+                            + +  ++g+  f   ++  +++ g+  +    D+++D  +D+++
  MMETSP0890-20130614|2656_1 1022 DINADGIDDLVLGADGAlsdgtitsagaayiiygdaswtadtsdiNVVDTWDGSEGFRVLGSEVGAQAGSILSFGSFDINNDEVDDIFI 1110
                  9************66666666688886766777776777777775555667777777777777777779999999************96 PP

>> PF12256.3  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00027      0.73       3      48 ..      82     128 ..      80     144 .. 0.82
   2 ?    2.6   0.0     0.027        73      28      50 ..     184     206 ..     177     220 .. 0.77
   3 ?    1.5   0.0     0.058   1.6e+02      30      50 ..     258     278 ..     250     303 .. 0.73
   4 ?    2.2   0.0     0.035        97      14      42 ..     322     348 ..     314     359 .. 0.78
   5 !    7.6   0.0   0.00079       2.1      28      48 ..     401     421 ..     382     436 .. 0.77
   6 ?    3.3   0.1     0.016        43      28      42 ..     462     476 ..     451     489 .. 0.79
   7 ?   -1.4   0.0      0.44   1.2e+03      23      46 ..     746     770 ..     728     804 .. 0.75
   8 ?    2.4   0.0      0.03        83      24      60 ..     814     850 ..     800     867 .. 0.64
   9 ?    1.8   0.0     0.048   1.3e+02      27      47 ..     888     908 ..     871     929 .. 0.75
  10 ?    2.3   0.0     0.033        90      28      47 ..     956     975 ..     934     989 .. 0.78
  11 ?    1.0   0.3     0.083   2.3e+02      30      46 ..    1021    1037 ..    1011    1053 .. 0.84
  12 ?   -3.8   0.0       2.5   6.8e+03      29      65 ..    1097    1132 ..    1091    1136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00027
   PF12256.3   3 sgnsfasepltlplptgvryd.tcqlslaDinGdGladlvlsvphik 48 
                 +g+++++++l+++   +++y      s+ D++GdG+ dl++  p+ +
  MMETSP0890-20130614|2656_1  82 RGDGYYVNGLQVKGNIFDSYTgSNVASAGDVDGDGIDDLIIGAPGAR 128
                 56777889999999999999977788999***********9888874 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.027
   PF12256.3  28 slaDinGdGladlvlsvphikek 50 
                 ++ D+nGdG  d+++ vp  k+k
  MMETSP0890-20130614|2656_1 184 TAGDLNGDGYDDVIIGVPNSKNK 206
                 578************66655444 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.058
   PF12256.3  30 aDinGdGladlvlsvphikek 50 
                  D++GdG+ dl++  ++ +  
  MMETSP0890-20130614|2656_1 258 FDFDGDGKDDLLIAADGYGDS 278
                 6***********966665443 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.035
   PF12256.3  14 lplptgvrydtcqlslaDinGdGladlvl 42 
                 +++p+++  d    ++ D+nGdG+ d+++
  MMETSP0890-20130614|2656_1 322 FSYPPRIGSD--VAAVDDMNGDGFDDICI 348
                 5667777777..456779*********98 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.00079
   PF12256.3  28 slaDinGdGladlvlsvphik 48 
                 ++ D+nGdG+adlv+  p+ +
  MMETSP0890-20130614|2656_1 401 KVGDFNGDGFADLVIGGPGQR 421
                 799***********9666653 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.016
   PF12256.3  28 slaDinGdGladlvl 42 
                 ++ Di+GdGl d+++
  MMETSP0890-20130614|2656_1 462 TAGDIDGDGLDDVLV 476
                 789*********998 PP

  == domain 7    score: -1.4 bits;  conditional E-value: 0.44
   PF12256.3  23 d.tcqlslaDinGdGladlvlsvph 46 
                 d t+  ++ D+n dG  d+ l  p+
  MMETSP0890-20130614|2656_1 746 DiTTVAAVGDVNDDGYEDIALGAPS 770
                 356667899**********995444 PP

  == domain 8    score: 2.4 bits;  conditional E-value: 0.03
   PF12256.3  24 tcqlslaDinGdGladlvl.svphikekaprhwrldfe 60 
                   ++s aD+n dG ad++    + +++   +++++  +
  MMETSP0890-20130614|2656_1 814 GSSISSADLNDDGYADILAgAPDAVGSS-YAVVYYGSA 850
                 46899*************9666666333.233333333 PP

  == domain 9    score: 1.8 bits;  conditional E-value: 0.048
   PF12256.3  27 lslaDinGdGladlvlsvphi 47 
                   + D+nGdG+ d  +  p+ 
  MMETSP0890-20130614|2656_1 888 AGVGDFNGDGIEDAAFGAPGA 908
                 6799*********99977766 PP

  == domain 10    score: 2.3 bits;  conditional E-value: 0.033
   PF12256.3  28 slaDinGdGladlvlsvphi 47 
                  + D++Gd++ad+++  p+ 
  MMETSP0890-20130614|2656_1 956 FAGDVDGDNFADFLIGAPGE 975
                 467***********976665 PP

  == domain 11    score: 1.0 bits;  conditional E-value: 0.083
   PF12256.3   30 aDinGdGladlvlsvph 46  
                   Din+dG+ dlvl  ++
  MMETSP0890-20130614|2656_1 1021 GDINADGIDDLVLGADG 1037
                  7***********96555 PP

  == domain 12    score: -3.8 bits;  conditional E-value: 2.5
   PF12256.3   29 laDinGdGladlvlsvphikekaprhwrldfete..pyl 65  
                    Din d + d+ + +p+i   a++++++ ++++  p +
  MMETSP0890-20130614|2656_1 1097 SFDINNDEVDDIFIGEPGI---ASAYILFGMAEDetPAK 1132
                  679**9*****99999999...88889988888777665 PP

>> PF04341.7  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00035      0.95      54      84 ..    1528    1558 ..    1521    1561 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00035
   PF04341.7   54 vgillglgqfvltflltglYvrrAnrefDpl 84  
                   gi++g+++fvl++   +++    nre+D++
  MMETSP0890-20130614|2656_1 1528 AGIVIGVLVFVLCCCCLIYFLFYKNREVDEE 1558
                  69***************************87 PP

>> PF03302.8  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.2    0.0003      0.83     351     382 ..    1507    1540 ..    1490    1551 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0003
   PF03302.8  351 ylikdsgstnks..GlstGaiaGisvavvvvvgG 382 
                   +  ++gs  ks  Gls GaiaGi + v+v v  
  MMETSP0890-20130614|2656_1 1507 AVPGGGGSKKKSsgGLSGGAIAGIVIGVLVFVLC 1540
                  555567899887779***********99987743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.44u 0.41s 00:00:02.85 Elapsed: 00:00:01.43
# Mc/sec: 2723.13
//
Query:       MMETSP0890-20130614|2667_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.76
# Mc/sec: 822.96
//
Query:       MMETSP0890-20130614|2675_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.7   0.2      0.034   13.5   0.2    1.0  1  PF09438.5 Domain of unknown function (DUF2017)


Domain annotation for each model (and alignments):
>> PF09438.5  Domain of unknown function (DUF2017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   2.5e-06     0.034     103     160 ..       5      62 ..       2      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.5e-06
   PF09438.5 103 arvvldtlpeggvevelteeeaqaWlaalnDvRLalgtrleieeeedeelpeddpraa 160
                 a+ v + ++e + +++l +e+ ++W+ a++ v + +g+r+e ++e + +l++d   + 
  MMETSP0890-20130614|2675_1   5 ATIVGAKINELSTHLRLAAESQDQWALAMTIVEMLIGKRIENAHEVPRRLDQDAVITL 62 
                 56777888999************************************99999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 257.26
//
Query:       MMETSP0890-20130614|2676_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-12   46.6   0.6    6.7e-11   41.5   0.1    2.2  2  PF00400.27 WD domain, G-beta repeat
     0.0021   16.1   0.1     0.0023   16.1   0.1    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1   9.8e-15   6.7e-11       6      39 .]       9      42 ..       6      42 .. 0.97
   2 !    3.7   0.0    0.0083        56       4      30 ..      49      77 ..      46      78 .] 0.70

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 9.8e-15
                EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +l+gH+++V+++a+s +g  l+s+S+D+t+rlWd
  MMETSP0890-20130614|2676_1  9 ELEGHQDSVNSIAYSLNGMTLVSASDDHTCRLWD 42
                699******************************9 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0083
                EEEEESSSSSEEEEEEESS..STEEEEEE CS
  PF00400.27  4 katlrgHtspVtcvafspd..gpllasgS 30
                ++++rg t++V+   +s +  g+++as +
  MMETSP0890-20130614|2676_1 49 LRIFRGATASVRRQVVSSPndGTIFASVG 77
                56777777777777777777788888765 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.3e-07    0.0023     221     272 ..      19      66 ..      10      76 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.3e-07
   PF11715.3 221 ldvsssevegqtfvftlsrDgkLRvWnletgqclrttdileaaellpadsls 272
                  + +s  ++g t+v + s D++ R+W+++++++lr    + +a+++ ++ +s
  MMETSP0890-20130614|2676_1  19 SIAYS--LNGMTLV-SASDDHTCRLWDVTNRAQLRIFRGA-TASVRRQVVSS 66 
                 44445..6888888.9*****************9988888.66666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:01.04
# Mc/sec: 179.73
//
Query:       MMETSP0890-20130614|2677_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.8    7.0  14.7         31    4.4   1.7    3.9  2  PF02746.11 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02746.11  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.7    0.0022        31      31      54 ..      15      37 ..       6      48 .. 0.69
   2 ?    1.0   4.8     0.027   3.6e+02      36      50 ..      51      65 ..      33      93 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0022
                EEEEE-------EEEE-STGGGHH CS
  PF02746.11 31 vkietseGvvGigeatsvggraet 54
                v i+ ++G+vGi +a+++g  +  
  MMETSP0890-20130614|2677_1 15 VGIN-DAGIVGINDAGINGINDTG 37
                6677.8888888888888844444 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.027
                -------EEEE-STG CS
  PF02746.11 36 seGvvGigeatsvgg 50
                ++G+ Gi+ea++vg 
  MMETSP0890-20130614|2677_1 51 DAGINGISEAGIVGL 65
                556666666665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        95  (0.00694851); expected 273.4 (0.02)
Passed bias filter:                       56  (0.00409596); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 459.71
//
Query:       MMETSP0890-20130614|2689_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.3   0.0      0.063   12.8   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
     0.0013   18.1   0.1       0.58    9.7   0.0    2.2  2  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.2e-06     0.063      22      51 ..       2      31 ..       1      42 [. 0.90
   2 !    4.5   0.0    0.0037        25      21      44 ..      38      61 ..      32      62 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.2e-06
  PF06743.10 22 feklasalereLdsispelllnlvwSlcll 51
                f+++a a  ++L s++p++l n+ w+++ +
  MMETSP0890-20130614|2689_1  2 FNAIADAALTKLESFKPQALANTAWAYATA 31
                688999999*****************9975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0037
  PF06743.10 21 ffeklasalereLdsispelllnl 44
                +f+ +a +   +Ld+++p++l n+
  MMETSP0890-20130614|2689_1 38 LFNEIADVARMNLDGFKPQELANT 61
                78999999999*******999775 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00076       5.2      20      36 ..       4      24 ..       2      24 .. 0.75
   2 !    9.7   0.0   8.5e-05      0.58      23      36 ..      48      61 ..      37      61 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00076
   PF07671.6 20 AIr....rnaerFNpQsIANt 36
                AI+       e F+pQ  ANt
  MMETSP0890-20130614|2689_1  4 AIAdaalTKLESFKPQALANT 24
                555555556799********9 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 8.5e-05
   PF07671.6 23 rnaerFNpQsIANt 36
                 n   F+pQ+ ANt
  MMETSP0890-20130614|2689_1 48 MNLDGFKPQELANT 61
                58899********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 270.13
//
Query:       MMETSP0890-20130614|2692_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:01.20
# Mc/sec: 109.83
//
Query:       MMETSP0890-20130614|2705_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-14   53.6   0.0    1.6e-14   53.5   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    7.4e-05   22.3   0.0    9.7e-05   21.9   0.0    1.2  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   2.3e-18   1.6e-14      16      66 ..       2      52 .]       1      52 [] 0.93

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 2.3e-18
   PF13306.1 16 sitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
                ++t+p  +t+Ig++aF++c+sl+++tlp  lt+i ++ F++c+slt++t+p
  MMETSP0890-20130614|2705_1  2 QLTLPAGLTTIGKEAFRGCTSLTQVTLPAGLTKIASWTFDGCTSLTQVTLP 52
                6899999***********************************99*999987 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.4e-08   9.7e-05       7      56 ..       4      51 ..       2      52 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.4e-08
   PF13855.1  7 dLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 L    l++i+++aF g+++L+   L    l+ i + +f+g++sL+++ L
  MMETSP0890-20130614|2705_1  4 TLPAG-LTTIGKEAFRGCTSLTQVTLP-AGLTKIASWTFDGCTSLTQVTL 51
                56666.9********************.889888888*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.80
# Mc/sec: 155.76
//
Query:       MMETSP0890-20130614|2706_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-20   70.7   0.0    8.6e-20   70.6   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    4.4e-10   39.0   0.0    1.5e-05   24.5   0.0    2.0  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.3e-23   8.6e-20      15      78 ..       1      64 [.       1      65 [] 0.95

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 1.3e-23
   PF13306.1 15 tsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFs 78
                t++t+p  +t+Ig+ aF++c+sl+++tlp  lt+ig+ aF++c+sl ++t+p+s+t i +naF 
  MMETSP0890-20130614|2706_1  1 TQLTLPADLTTIGDAAFYRCTSLTQLTLPVGLTTIGDDAFYGCTSLIQLTMPDSITDIRSNAFD 64
                6899**********************************************************96 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.1e-09   1.5e-05      13      56 ..       9      51 ..       2      53 .. 0.93
   2 !   17.7   0.0   2.8e-07    0.0019      13      47 ..      32      65 .]      30      65 .] 0.96

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.1e-09
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+d aF ++++L+ L L    l++i ++af g++sL +L +
  MMETSP0890-20130614|2706_1  9 LTTIGDAAFYRCTSLTQLTLP-VGLTTIGDDAFYGCTSLIQLTM 51
                9********************.*****************99976 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.8e-07
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkg 47
                l++i+d+aF g+++L  L    ++++ i ++af+g
  MMETSP0890-20130614|2706_1 32 LTTIGDDAFYGCTSLIQLTMP-DSITDIRSNAFDG 65
                89*******************.***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        99  (0.00724108); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 216.34
//
Query:       MMETSP0890-20130614|2713_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.8   0.0    0.00014   21.5   0.0    1.1  1  PF04564.10 U-box domain


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     1e-08   0.00014      22      71 ..       5      55 ..       2      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1e-08
                TT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHC CS
  PF04564.10 22 sgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfleek 71
                sg++++rs +++ l+ +   dP+t   +  e    pn+ lK +I+ + +++
  MMETSP0890-20130614|2713_1  5 SGHSFERSMLQEALDINPYQDPMTgLIHEHELTFGPNRGLKDAIELWKQSN 55
                99**************999*****77788888999************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.84
# Mc/sec: 202.55
//
Query:       MMETSP0890-20130614|2720_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 789.62
//
Query:       MMETSP0890-20130614|2732_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.61
# Mc/sec: 267.13
//
Query:       MMETSP0890-20130614|2731_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.051   13.1   0.0      0.051   13.1   0.0    1.2  1  PF06743.10 FAST kinase-like protein, subdomain 1
       0.24   11.1   3.9        1.8    8.3   0.1    2.0  2  PF05836.7  Chorion protein S16


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.5e-06     0.051      22      56 ..      15      50 ..       3      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.5e-06
  PF06743.10 22 fek.lasalereLdsispelllnlvwSlclleyfpv 56
                f++ +a +  ++Lds+ p+ l n+ w+++    +p 
  MMETSP0890-20130614|2731_1 15 FNAiVADVALTKLDSFTPQVLANTAWAFAASVEVPA 50
                54415667889******************9888875 PP

>> PF05836.7  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00027       1.8      13      49 ..       5      41 ..       2      48 .. 0.87
   2 ?    2.2   2.5     0.021   1.4e+02      16      36 ..      45      65 ..      36      66 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00027
   PF05836.7 13 etaeaqaaaltnaaGaaasaakldgadwdalnryGye 49
                +t++ +a al na  a  + +kld+   ++l    + 
  MMETSP0890-20130614|2731_1  5 ATIDIEAPALFNAIVADVALTKLDSFTPQVLANTAWA 41
                688999*******************999998887775 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.021
   PF05836.7 16 eaqaaaltnaaGaaasaakld 36
                  +  al na  aaa+ +kld
  MMETSP0890-20130614|2731_1 45 SVEVPALFNAIAAAAALTKLD 65
                44567999*******999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 229.22
//
Query:       MMETSP0890-20130614|2736_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-60  198.2   0.0    4.7e-15   54.6   0.0    4.4  5  PF13475.1  Domain of unknown function (DUF4116)
    1.6e-08   33.8   5.5        0.5    9.8   0.1    5.5  6  PF02831.10 gpW
    1.7e-05   24.3   0.0        2.5    7.7   0.0    4.5  6  PF07892.6  Protein of unknown function (DUF1667)
      0.001   18.4   0.1         27    4.3   0.0    4.8  5  PF02268.11 Transcription initiation factor IIA, gamma subunit, helical domain
      0.001   18.8   0.6        7.2    6.4   0.0    3.5  4  PF00453.13 Ribosomal protein L20
      0.004   16.7   0.2        1.4    8.6   0.0    3.3  3  PF02017.10 CIDE-N domain
     0.0081   15.6   0.9        7.3    6.1   0.1    3.4  3  PF04296.8  Protein of unknown function (DUF448)
  ------ inclusion threshold ------
      0.017   14.9   0.1         45    3.8   0.0    3.4  3  PF07166.6  Protein of unknown function (DUF1398)
      0.018   14.6   1.9          3    7.4   0.1    2.7  2  PF04619.7  Dr-family adhesin
      0.019   14.5   2.2        4.5    6.9   0.0    3.7  3  PF01521.15 Iron-sulphur cluster biosynthesis
      0.022   14.6   0.2         46    4.0   0.0    3.4  4  PF11042.3  Protein of unknown function (DUF2750)
      0.045   13.4   0.0        2.2    8.1   0.0    3.4  5  PF07453.8  NUMOD1 domain
      0.057   12.3   0.2        0.4    9.5   0.1    2.0  2  PF10282.4  Lactonase, 7-bladed beta-propeller
      0.091   13.0   1.5         12    6.3   0.0    2.8  2  PF02597.15 ThiS family
       0.11   12.1   0.2        4.2    7.0   0.1    3.0  2  PF00156.22 Phosphoribosyl transferase domain
       0.11   12.0   6.1        1.5    8.3   0.3    3.7  4  PF12244.3  Protein of unknown function (DUF3606)
          1    8.9   3.9        9.7    5.7   0.1    3.6  5  PF01502.13 Phosphoribosyl-AMP cyclohydrolase


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   2.1e-15   1.7e-12       1      49 []       2      50 ..       2      50 .. 0.99
   2 !   54.6   0.0   5.8e-18   4.7e-15       1      49 []      27      75 ..      27      75 .. 0.99
   3 !   49.8   0.0   1.9e-16   1.5e-13       1      48 [.      52      99 ..      52     100 .. 0.98
   4 !   43.4   0.0   1.9e-14   1.6e-11       1      49 []     102     150 ..     102     150 .. 0.99
   5 !   22.5   0.0   6.3e-08     5e-05       1      29 [.     152     180 ..     152     181 .] 0.98

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 2.1e-15
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrE+v  av+++g al+y+ +eLk+D+eiv  Av+q+g+al+ya +eL+
  MMETSP0890-20130614|2736_1  2 DRELVSVAVQQHGRALEYAADELKSDREIVTVAVQQDGNALKYAADELK 50
                9**********************************************97 PP

  == domain 2    score: 54.6 bits;  conditional E-value: 5.8e-18
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrEiv+ av+++g+alky+ +eLk+D+e+v+ Av+q g++l +a +eL+
  MMETSP0890-20130614|2736_1 27 DREIVTVAVQQDGNALKYAADELKSDREVVMVAVQQKGCSLQFAANELK 75
                9**********************************************97 PP

  == domain 3    score: 49.8 bits;  conditional E-value: 1.9e-16
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
                DrE+v+ av++ g++l+++ +eLk+D+e+v  Av+q+g al+ya +eL
  MMETSP0890-20130614|2736_1 52 DREVVMVAVQQKGCSLQFAANELKSDRELVRVAVQQDGRALEYAADEL 99
                9*******************************************9998 PP

  == domain 4    score: 43.4 bits;  conditional E-value: 1.9e-14
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrEivl  v+k gs l+++ +eLk+D eiv  Av+q+g++l +a +eL+
  MMETSP0890-20130614|2736_1 102 DREIVLCGVRKSGSTLRKAADELKCDHEIVRIAVQQDGCSLQFAANELK 150
                 9**********************************************97 PP

  == domain 5    score: 22.5 bits;  conditional E-value: 6.3e-08
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkei 29 
                 DrE+v  av+++g al+y+ +eL +D+ei
  MMETSP0890-20130614|2736_1 152 DRELVRVAVQQDGRALEYAADELMSDREI 180
                 9***************************8 PP

>> PF02831.10  gpW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0071       5.7      23      41 ..       7      25 ..       4      32 .. 0.82
   2 ?    4.2   0.1     0.035        28      23      47 ..      32      56 ..      24      67 .. 0.77
   3 ?    1.6   0.0      0.23   1.8e+02      21      42 ..      53      76 ..      40      83 .. 0.69
   4 !    9.8   0.1   0.00062       0.5      24      40 ..      83      99 ..      57     112 .. 0.77
   5 ?    3.4   0.0     0.062        50      21      42 ..     128     151 ..     111     157 .. 0.71
   6 !    8.5   0.0    0.0016       1.3      24      39 ..     158     173 ..     153     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0071
  PF02831.10 23 vvsvQkdgRrveytaasla 41
                 v+vQ+ gR +ey a  l+
  MMETSP0890-20130614|2736_1  7 SVAVQQHGRALEYAADELK 25
                478**********998776 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.035
  PF02831.10 23 vvsvQkdgRrveytaasladLkkyi 47
                 v+vQ+dg  ++y a  l+  ++++
  MMETSP0890-20130614|2736_1 32 TVAVQQDGNALKYAADELKSDREVV 56
                477**********999887666665 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.23
  PF02831.10 21 krvvs..vQkdgRrveytaaslad 42
                + vv   vQ+ g ++++ a  l+ 
  MMETSP0890-20130614|2736_1 53 REVVMvaVQQKGCSLQFAANELKS 76
                55544449******9999988765 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00062
  PF02831.10 24 vsvQkdgRrveytaasl 40
                v+vQ+dgR +ey a  l
  MMETSP0890-20130614|2736_1 83 VAVQQDGRALEYAADEL 99
                66**********98766 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.062
  PF02831.10  21 krvvs..vQkdgRrveytaaslad 42 
                    v   vQ+dg ++++ a  l+ 
  MMETSP0890-20130614|2736_1 128 HEIVRiaVQQDGCSLQFAANELKS 151
                 5555444**********9988865 PP

  == domain 6    score: 8.5 bits;  conditional E-value: 0.0016
  PF02831.10  24 vsvQkdgRrveytaas 39 
                 v+vQ+dgR +ey a  
  MMETSP0890-20130614|2736_1 158 VAVQQDGRALEYAADE 173
                 78**********9865 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0031       2.5       2      27 ..      15      40 ..      14      43 .. 0.88
   2 !    6.4   0.0    0.0077       6.2       4      31 ..      42      69 ..      39      83 .. 0.88
   3 ?    4.3   0.0     0.036        29       2      29 ..      90     117 ..      89     132 .. 0.88
   4 ?   -0.8   0.0       1.4   1.1e+03       9      31 ..     122     144 ..     119     160 .. 0.61
   5 ?   -0.1   0.0      0.81   6.5e+02       4      28 ..     142     166 ..     140     171 .. 0.81
   6 ?   -1.8   0.0       2.9   2.4e+03       2      14 ..     165     177 ..     164     180 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0031
   PF07892.6  2 rGeeYakkeltnpkriltstVkvegg 27
                r  eYa +el++ + i+t  V+ +g 
  MMETSP0890-20130614|2736_1 15 RALEYAADELKSDREIVTVAVQQDGN 40
                789****************9998776 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0077
   PF07892.6  4 eeYakkeltnpkriltstVkveggelpl 31
                 +Ya +el++ + +++  V+ +g++l++
  MMETSP0890-20130614|2736_1 42 LKYAADELKSDREVVMVAVQQKGCSLQF 69
                68******************99998775 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.036
   PF07892.6   2 rGeeYakkeltnpkriltstVkveggel 29 
                 r  eYa +el + + i+   V+ +g++l
  MMETSP0890-20130614|2736_1  90 RALEYAADELMSDREIVLCGVRKSGSTL 117
                 789***************9999888765 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 1.4
   PF07892.6   9 keltnpkriltstVkveggelpl 31 
                 +el++   i+   V+ +g++l++
  MMETSP0890-20130614|2736_1 122 DELKCDHEIVRIAVQQDGCSLQF 144
                 56666666666666666555443 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.81
   PF07892.6   4 eeYakkeltnpkriltstVkvegge 28 
                  ++a +el++ +  +   V+ +g  
  MMETSP0890-20130614|2736_1 142 LQFAANELKSDRELVRVAVQQDGRA 166
                 5899*****9999999988877765 PP

  == domain 6    score: -1.8 bits;  conditional E-value: 2.9
   PF07892.6   2 rGeeYakkeltnp 14 
                 r  eYa +el + 
  MMETSP0890-20130614|2736_1 165 RALEYAADELMSD 177
                 7789*****9875 PP

>> PF02268.11  Transcription initiation factor IIA, gamma subunit, helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.31   2.5e+02      12      28 ..      14      30 ..      12      33 .. 0.91
   2 ?   -0.0   0.0      0.74   5.9e+02      12      27 ..      39      54 ..      39      56 .. 0.87
   3 ?    4.0   0.0     0.041        33      12      28 ..      89     105 ..      87     106 .. 0.94
   4 ?    0.8   0.0       0.4   3.2e+02      12      28 ..     114     130 ..     111     133 .. 0.85
   5 ?    4.3   0.0     0.033        27      12      28 ..     164     180 ..     162     181 .] 0.94

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.31
  PF02268.11 12 GtaLtdaLDeLisdgrI 28
                G+aL+ a DeL sd++I
  MMETSP0890-20130614|2736_1 14 GRALEYAADELKSDREI 30
                99*********999988 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.74
  PF02268.11 12 GtaLtdaLDeLisdgr 27
                G+aL+ a DeL sd++
  MMETSP0890-20130614|2736_1 39 GNALKYAADELKSDRE 54
                99*********88865 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.041
  PF02268.11  12 GtaLtdaLDeLisdgrI 28 
                 G+aL+ a DeL+sd++I
  MMETSP0890-20130614|2736_1  89 GRALEYAADELMSDREI 105
                 89************988 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.4
  PF02268.11  12 GtaLtdaLDeLisdgrI 28 
                 G +L +a DeL  d +I
  MMETSP0890-20130614|2736_1 114 GSTLRKAADELKCDHEI 130
                 89********9877766 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.033
  PF02268.11  12 GtaLtdaLDeLisdgrI 28 
                 G+aL+ a DeL+sd++I
  MMETSP0890-20130614|2736_1 164 GRALEYAADELMSDREI 180
                 89************998 PP

>> PF00453.13  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.053        42       8      46 ..       8      46 ..       2      56 .. 0.69
   2 !    6.4   0.0     0.009       7.2       9      46 ..      59      96 ..      50     104 .. 0.85
   3 ?   -1.6   0.0       2.9   2.3e+03      17      45 ..     117     145 ..     111     150 .. 0.69
   4 ?    5.1   0.0     0.024        19      17      46 ..     142     171 ..     131     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.053
                HHHHHHHHHHCCT------TTTSHCHHHHHHHHHHHHHH CS
  PF00453.13  8 varkrrkkilklakgfrgarsklfrtakqavikalkyay 46
                va +++ + l+ a     + ++++ +a q+   alkya 
  MMETSP0890-20130614|2736_1  8 VAVQQHGRALEYAADELKSDREIVTVAVQQDGNALKYAA 46
                455667777777777777777777777777777777775 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.009
                HHHHHHHHHCCT------TTTSHCHHHHHHHHHHHHHH CS
  PF00453.13  9 arkrrkkilklakgfrgarsklfrtakqavikalkyay 46
                a +++   l++a +   + ++l+r+a q+  +al+ya 
  MMETSP0890-20130614|2736_1 59 AVQQKGCSLQFAANELKSDRELVRVAVQQDGRALEYAA 96
                5566667788999999999*****************96 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 2.9
                 HCCT------TTTSHCHHHHHHHHHHHHH CS
  PF00453.13  17 lklakgfrgarsklfrtakqavikalkya 45 
                 l++a       ++++r+a q+   +l++a
  MMETSP0890-20130614|2736_1 117 LRKAADELKCDHEIVRIAVQQDGCSLQFA 145
                 55666666677788888888877777666 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.024
                 HCCT------TTTSHCHHHHHHHHHHHHHH CS
  PF00453.13  17 lklakgfrgarsklfrtakqavikalkyay 46 
                 l++a +   + ++l+r+a q+  +al+ya 
  MMETSP0890-20130614|2736_1 142 LQFAANELKSDRELVRVAVQQDGRALEYAA 171
                 6777777788999***************96 PP

>> PF02017.10  CIDE-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.077        62      29      73 ..      19      61 ..       7      66 .. 0.78
   2 ?    0.6   0.0      0.55   4.4e+02      31      53 ..      71      93 ..      60     107 .. 0.82
   3 !    8.6   0.0    0.0017       1.4      27      70 ..     117     158 ..     113     165 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.077
  PF02017.10 29 KvleilelkkklvtLvLeeDGTevddedyFqtledntelvvlekg 73
                 +++ l+ +++ vt+  ++DG +++       l+++ e v+++  
  MMETSP0890-20130614|2736_1 19 YAADELKSDREIVTVAVQQDGNALK--YAADELKSDREVVMVAVQ 61
                5789999999***********9998..334567777777766655 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.55
  PF02017.10 31 leilelkkklvtLvLeeDGTevd 53
                ++ l+ +++lv++  ++DG +++
  MMETSP0890-20130614|2736_1 71 ANELKSDRELVRVAVQQDGRALE 93
                56788888999999999998776 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0017
  PF02017.10  27 lsKvleilelkkklvtLvLeeDGTevddedyFqtledntelvvl 70 
                 l+K+++ l+ +++ v++  ++DG  ++     + l+++ elv +
  MMETSP0890-20130614|2736_1 117 LRKAADELKCDHEIVRIAVQQDGCSLQ--FAANELKSDRELVRV 158
                 89*********************9988..222456677776655 PP

>> PF04296.8  Protein of unknown function (DUF448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1     0.009       7.3       8      27 ..      72      92 ..      69     113 .. 0.79
   2 ?    0.1   0.0      0.68   5.5e+02      13      25 ..     127     139 ..     102     148 .. 0.79
   3 ?    5.9   0.0     0.011       8.5       8      27 ..     147     166 ..     143     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.009
   PF04296.8  8 rerapkkeLiRfvvspdge.v 27
                +e ++ +eL+R++v++dg+ +
  MMETSP0890-20130614|2736_1 72 NELKSDRELVRVAVQQDGRaL 92
                688999***********9623 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.68
   PF04296.8  13 kkeLiRfvvspdg 25 
                  +e +R++v++dg
  MMETSP0890-20130614|2736_1 127 DHEIVRIAVQQDG 139
                 6788999999997 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.011
   PF04296.8   8 rerapkkeLiRfvvspdgev 27 
                 +e ++ +eL+R++v++dg+ 
  MMETSP0890-20130614|2736_1 147 NELKSDRELVRVAVQQDGRA 166
                 688999***********963 PP

>> PF07166.6  Protein of unknown function (DUF1398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.085        68      54      82 ..      24      52 ..      18      62 .. 0.89
   2 ?    3.8   0.0     0.056        45      54      82 ..      74     102 ..      68     121 .. 0.88
   3 ?    3.6   0.0     0.064        52      54      82 ..     149     177 ..     128     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.085
   PF07166.6 54 ikgarklvkvkasknkalikaavaklksr 82
                +k+ r++v v ++++ + +k a+++lks 
  MMETSP0890-20130614|2736_1 24 LKSDREIVTVAVQQDGNALKYAADELKSD 52
                89******************999999885 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.056
   PF07166.6  54 ikgarklvkvkasknkalikaavaklksr 82 
                 +k+ r+lv+v ++++   ++ a+++l+s 
  MMETSP0890-20130614|2736_1  74 LKSDRELVRVAVQQDGRALEYAADELMSD 102
                 89*************99999999988875 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.064
   PF07166.6  54 ikgarklvkvkasknkalikaavaklksr 82 
                 +k+ r+lv+v ++++   ++ a+++l+s 
  MMETSP0890-20130614|2736_1 149 LKSDRELVRVAVQQDGRALEYAADELMSD 177
                 89*************99999999888775 PP

>> PF04619.7  Dr-family adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0037         3      21      62 ..      35      76 ..       9      80 .. 0.81
   2 ?    6.2   0.1     0.009       7.2      19      63 ..     108     152 ..     104     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0037
                EE---EEEEEE-----TT-EE-EE--EEE--TSSEEEEEE-G CS
   PF04619.7 21 vtvtdkteskrrseLtdgarlgevsvsatGCnteqvalkada 62
                v+ ++++ +    eL   +++  v+v+ +GC+ + +a ++++
  MMETSP0890-20130614|2736_1 35 VQQDGNALKYAADELKSDREVVMVAVQQKGCSLQFAANELKS 76
                33445555666789*****************98888766655 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.009
                 SEEE---EEEEEE-----TT-EE-EE--EEE--TSSEEEEEE-GG CS
   PF04619.7  19 CqvtvtdkteskrrseLtdgarlgevsvsatGCnteqvalkadad 63 
                 C v+  ++t  k   eL   +++  ++v+  GC+ + +a ++++d
  MMETSP0890-20130614|2736_1 108 CGVRKSGSTLRKAADELKCDHEIVRIAVQQDGCSLQFAANELKSD 152
                 888888899999999******************998887766655 PP

>> PF01521.15  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.063        51      14      34 ..      45      66 ..      36      89 .. 0.70
   2 ?    6.9   0.0    0.0056       4.5      11      34 ..     117     141 ..     112     154 .. 0.82
   3 ?    0.2   0.0      0.68   5.4e+02      19      32 ..     150     164 ..     142     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.063
  PF01521.15 14 lleleeeeka.lRlgVkygGcs 34
                ++++ +++++ + ++V+++Gcs
  MMETSP0890-20130614|2736_1 45 AADELKSDREvVMVAVQQKGCS 66
                5555555555589999999995 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0056
  PF01521.15  11 lkelleleeeeka.lRlgVkygGcs 34 
                 l++++++ + +++ +R++V++ Gcs
  MMETSP0890-20130614|2736_1 117 LRKAADELKCDHEiVRIAVQQDGCS 141
                 67777777777888**********6 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.68
  PF01521.15  19 eeeka.lRlgVkygG 32 
                 +++++ +R++V++ G
  MMETSP0890-20130614|2736_1 150 KSDRElVRVAVQQDG 164
                 3333359****9998 PP

>> PF11042.3  Protein of unknown function (DUF2750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.057        46      71     102 ..      21      52 ..      15      54 .. 0.90
   2 ?    2.7   0.0      0.14   1.1e+02      72     101 ..      72     101 ..      67     103 .. 0.90
   3 ?    2.1   0.0      0.21   1.7e+02      72     102 ..     122     152 ..     117     154 .. 0.90
   4 ?    3.0   0.0      0.11        91      72     100 ..     147     175 ..     127     178 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.057
   PF11042.3  71 lpgLeedgvlvgvfpneeeeglevepeelake 102
                  ++L+ d   v v ++++ + l+  ++el+++
  MMETSP0890-20130614|2736_1  21 ADELKSDREIVTVAVQQDGNALKYAADELKSD 52 
                 5799*************************975 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.14
   PF11042.3  72 pgLeedgvlvgvfpneeeeglevepeelak 101
                 ++L+ d  lv v ++++   le  ++el +
  MMETSP0890-20130614|2736_1  72 NELKSDRELVRVAVQQDGRALEYAADELMS 101
                 6899**********************9965 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.21
   PF11042.3  72 pgLeedgvlvgvfpneeeeglevepeelake 102
                 ++L+ d+  v + ++++ + l++ ++el+++
  MMETSP0890-20130614|2736_1 122 DELKCDHEIVRIAVQQDGCSLQFAANELKSD 152
                 78999999*******************9975 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.11
   PF11042.3  72 pgLeedgvlvgvfpneeeeglevepeela 100
                 ++L+ d  lv v ++++   le  ++el 
  MMETSP0890-20130614|2736_1 147 NELKSDRELVRVAVQQDGRALEYAADELM 175
                 68999999999999999999999999986 PP

>> PF07453.8  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.6   2.9e+03      22      31 ..      20      29 ..      20      32 .. 0.83
   2 ?   -1.8   0.0       3.7     3e+03      22      31 ..      45      54 ..      43      56 .. 0.85
   3 ?   -0.8   0.0       1.7   1.4e+03      22      31 ..      70      79 ..      66      83 .. 0.82
   4 ?    8.1   0.0    0.0028       2.2      15      33 ..     113     131 ..     101     134 .. 0.85
   5 ?   -0.8   0.0       1.7   1.4e+03      22      31 ..     145     154 ..     141     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.6
   PF07453.8 22 AAkyLgishs 31
                AA++L+ ++ 
  MMETSP0890-20130614|2736_1 20 AADELKSDRE 29
                899***9986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.7
   PF07453.8 22 AAkyLgishs 31
                AA++L+ ++ 
  MMETSP0890-20130614|2736_1 45 AADELKSDRE 54
                89****9985 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.7
   PF07453.8 22 AAkyLgishs 31
                AA++L+ ++ 
  MMETSP0890-20130614|2736_1 70 AANELKSDRE 79
                9*****9986 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0028
   PF07453.8  15 sFpSireAAkyLgishstI 33 
                 s +++r+AA++L+++h  +
  MMETSP0890-20130614|2736_1 113 SGSTLRKAADELKCDHEIV 131
                 56789***********855 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 1.7
   PF07453.8  22 AAkyLgishs 31 
                 AA++L+ ++ 
  MMETSP0890-20130614|2736_1 145 AANELKSDRE 154
                 9*****9986 PP

>> PF10282.4  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00049       0.4      42     100 ..      33      92 ..       3      97 .. 0.72
   2 ?    0.7   0.0      0.25     2e+02      59     101 ..     126     168 ..     110     171 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00049
                 -EE-TTSSEE.EE--T..TTTEEEEEEE-S----EEEEEEEE.-----S--EE-----EE CS
   PF10282.4  42 Lalsadkktl.Yavnetgkegsvsafsidkdsgkltllnkvpsegaspchlsvdedgkll 100
                 +a+++d++ l Ya++e +++ +v+ ++++++  +l++ ++  ++  + + ++v++dg+ l
  MMETSP0890-20130614|2736_1  33 VAVQQDGNALkYAADELKSDREVVMVAVQQKGCSLQFAANELKSDRELVRVAVQQDGRAL 92 
                 556666666668888888888888888888888888888888888888888888888876 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.25
                 TTTEEEEEEE-S----EEEEEEEE.-----S--EE-----EEE CS
   PF10282.4  59 kegsvsafsidkdsgkltllnkvpsegaspchlsvdedgklll 101
                  + +++ +++++d  +l++ ++  ++  + + ++v++dg+ l 
  MMETSP0890-20130614|2736_1 126 CDHEIVRIAVQQDGCSLQFAANELKSDRELVRVAVQQDGRALE 168
                 5667888899999999999999999999999999999999875 PP

>> PF02597.15  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3     0.031        25      22      68 ..      40      79 ..       3     107 .. 0.70
   2 ?    6.3   0.0     0.014        12      19      69 ..     112     155 ..     101     163 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.031
                CBHHHHHHHHCCTTCHHHHTSSTCEEEETTEEEGTCTTTSB--SSSE CS
  PF02597.15 22 stvaelleaLgerypelaelerrvavavNgeivprlwldtelkdgDe 68
                  ++ + ++L+         +++v+vav ++ ++ + +  elk+  e
  MMETSP0890-20130614|2736_1 40 NALKYAADELKS-------DREVVMVAVQQKGCSLQFAANELKSDRE 79
                333333333333.......4588888887777777766666666655 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.014
                 SSHCBHHHHHHHHCCTTCHHHHTSSTCEEEETTEEEGTCTTTSB--SSSEE CS
  PF02597.15  19 aegstvaelleaLgerypelaelerrvavavNgeivprlwldtelkdgDev 69 
                 ++gst++ + ++L+ ++       + v++av ++ ++ + +  elk+  e+
  MMETSP0890-20130614|2736_1 112 KSGSTLRKAADELKCDH-------EIVRIAVQQDGCSLQFAANELKSDREL 155
                 689***********999.......9******99999998888888887775 PP

>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.2   9.8e+02     100     122 ..      13      34 ..      10      36 .. 0.69
   2 ?    7.0   0.1    0.0052       4.2      97     123 ..     110     135 ..      34     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.2
                 ---HHHH---TTT.T----EEEEE CS
  PF00156.22 100 tGgTlraaielLk.eagakevgva 122
                 +G++l+ a++ Lk +++   v va
  MMETSP0890-20130614|2736_1  13 HGRALEYAADELKsDRE--IVTVA 34 
                 68999999999994444..55555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0052
                 EE----HHHH---TTT.T----EEEEEE CS
  PF00156.22  97 vlatGgTlraaielLk.eagakevgvav 123
                 v  +G Tlr+a++ Lk +++   v++av
  MMETSP0890-20130614|2736_1 110 VRKSGSTLRKAADELKcDHE--IVRIAV 135
                 55799999999999997777..888876 PP

>> PF12244.3  Protein of unknown function (DUF3606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3    0.0019       1.5      22      56 ..      16      50 ..       1      51 [. 0.87
   2 ?    0.0   0.0      0.73   5.9e+02      27      49 ..      71      93 ..      65     101 .. 0.75
   3 ?    3.6   0.0     0.055        44      27      56 ..     121     150 ..     115     151 .. 0.84
   4 ?    0.2   0.1      0.65   5.2e+02      24      49 ..     143     168 ..     131     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0019
   PF12244.3 22 evkyWakrlgvseeqLkaAVrkVGnsakaVraeLa 56
                 ++y a++l+  +e ++ AV++ Gn++k  ++eL+
  MMETSP0890-20130614|2736_1 16 ALEYAADELKSDREIVTVAVQQDGNALKYAADELK 50
                68999**********************99999987 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.73
   PF12244.3 27 akrlgvseeqLkaAVrkVGnsak 49
                a++l+  +e ++ AV++ G++++
  MMETSP0890-20130614|2736_1 71 ANELKSDRELVRVAVQQDGRALE 93
                78888889999999999888776 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.055
   PF12244.3  27 akrlgvseeqLkaAVrkVGnsakaVraeLa 56 
                 a++l++  e ++ AV++ G s++  ++eL+
  MMETSP0890-20130614|2736_1 121 ADELKCDHEIVRIAVQQDGCSLQFAANELK 150
                 789*************99888776666665 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.65
   PF12244.3  24 kyWakrlgvseeqLkaAVrkVGnsak 49 
                 ++ a++l+  +e ++ AV++ G++++
  MMETSP0890-20130614|2736_1 143 QFAANELKSDRELVRVAVQQDGRALE 168
                 55578888888999999998887765 PP

>> PF01502.13  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.73   5.8e+02      49      64 ..      26      41 ..      10      48 .. 0.70
   2 ?    1.4   0.1      0.27   2.2e+02      37      62 ..      39      64 ..      27      68 .. 0.68
   3 ?   -0.0   0.1      0.75     6e+02      40      62 ..      67      89 ..      51      96 .. 0.53
   4 ?    5.7   0.1     0.012       9.7      34      62 ..     111     139 ..     101     147 .. 0.88
   5 ?   -1.7   0.0       2.5     2e+03      48      63 ..     150     165 ..     141     170 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.73
                ----EEEEEEEE---- CS
  PF01502.13 49 CDqDalllkveqkgaa 64
                 D++ + ++v+q+g+a
  MMETSP0890-20130614|2736_1 26 SDREIVTVAVQQDGNA 41
                5666667777776654 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.27
                ---EEEEEEEE-----EEEEEEEE-- CS
  PF01502.13 37 gnvqkvkeirlDCDqDalllkveqkg 62
                gn +k    +l  D+++++++v+qkg
  MMETSP0890-20130614|2736_1 39 GNALKYAADELKSDREVVMVAVQQKG 64
                55555555566677788888888776 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.75
                EEEEEEEE-----EEEEEEEE-- CS
  PF01502.13 40 qkvkeirlDCDqDalllkveqkg 62
                ++    +l  D++ + ++v+q+g
  MMETSP0890-20130614|2736_1 67 LQFAANELKSDRELVRVAVQQDG 89
                33333444455555556665555 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.012
                 ------EEEEEEEE-----EEEEEEEE-- CS
  PF01502.13  34 etSgnvqkvkeirlDCDqDalllkveqkg 62 
                 ++Sg +++    +l CD++ + ++v+q+g
  MMETSP0890-20130614|2736_1 111 RKSGSTLRKAADELKCDHEIVRIAVQQDG 139
                 5799999999999**************98 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 2.5
                 -----EEEEEEEE--- CS
  PF01502.13  48 DCDqDalllkveqkga 63 
                   D++ + ++v+q+g 
  MMETSP0890-20130614|2736_1 150 KSDRELVRVAVQQDGR 165
                 5688888899999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.89
# Mc/sec: 487.35
//
Query:       MMETSP0890-20130614|2738_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00035   19.7   0.5     0.0011   18.0   0.1    2.1  2  PF08776.6 VASP tetramerisation domain
  ------ inclusion threshold ------
      0.017   14.4   0.9      0.024   14.0   0.6    1.4  1  PF07033.6 Orthopoxvirus B11R protein
      0.018   14.0   1.1       0.02   13.9   0.7    1.0  1  PF11279.3 Protein of unknown function (DUF3080)
      0.023   14.5   1.1      0.029   14.2   0.7    1.2  1  PF11083.3 Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> PF08776.6  VASP tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.55   1.9e+03      16      21 ..      13      18 ..      11      19 .. 0.82
   2 !   18.0   0.1   3.3e-07    0.0011       4      16 ..      21      33 ..      18      35 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.55
   PF08776.6 16 vvrELq 21
                v++E +
  MMETSP0890-20130614|2738_1 13 VRKEIH 18
                899987 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.3e-07
   PF08776.6  4 dldRmKQEiLeEv 16
                ++dR+KQEiLe v
  MMETSP0890-20130614|2738_1 21 EYDRIKQEILENV 33
                8**********88 PP

>> PF07033.6  Orthopoxvirus B11R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.6   6.9e-06     0.024      10      30 ..      18      38 ..       9      65 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.9e-06
   PF07033.6 10 imneidrekeeilknveienn 30
                  ne dr k+eil nv i n 
  MMETSP0890-20130614|2738_1 18 HYNEYDRIKQEILENVAIGNF 38
                47****************985 PP

>> PF11279.3  Protein of unknown function (DUF3080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.7     6e-06      0.02     225     295 ..      22      90 ..       8      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6e-06
   PF11279.3 225 rstekakilrnvfqkiYiekvQpylaqldrayqqlleplqqlaqqlsaviqsslrqyiaraedslwqqfrs 295
                  +  k++il+nv    +++++  y+a +d  ++++ ++l ++++  +  + s +  +   + +sl++ f+ 
  MMETSP0890-20130614|2738_1  22 YDRIKQEILENVAIGNFLTRIEKYQAAIDFSRRNYEKLLLNISEYPQLKQRSHYVLFT--YARSLLEVFKA 90 
                 566799**************************************99866554444444..35666666665 PP

>> PF11083.3  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.7   8.4e-06     0.029      39      85 ..      20      66 ..       6      76 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.4e-06
   PF11083.3 39 akydfsklNltesitleqvekeikklqeelekeldeYEklvrrLekf 85
                  yd  k  + e++ + +  + i+k q  ++ ++ +YEkl   + ++
  MMETSP0890-20130614|2738_1 20 NEYDRIKQEILENVAIGNFLTRIEKYQAAIDFSRRNYEKLLLNISEY 66
                456778889*******************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.80
# Mc/sec: 284.57
//
Query:       MMETSP0890-20130614|2737_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-09   35.9   0.1    4.1e-05   22.6   0.0    2.8  3  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.045   13.3   0.0        2.9    7.5   0.0    2.3  2  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.9e-09   4.1e-05      49      69 .]       2      22 ..       1      22 [. 0.95
   2 ?    0.1   0.0     0.065   4.4e+02       7      29 ..      58      81 ..      51      89 .. 0.70
   3 !    9.4   0.0   7.9e-05      0.54      50      67 ..     106     123 ..      92     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.9e-09
                SBTTTTTT-TTEEEEEEESSS CS
  PF00240.18 49 rtlseyniqdgstlhlvlrlr 69
                rtls+yniq++stlhlvlrlr
  MMETSP0890-20130614|2737_1  2 RTLSDYNIQKESTLHLVLRLR 22
                8******************87 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.065
                EEEEEECT.TSBHHHHHHHHHHHH CS
  PF00240.18  7 titlevep.sdtvselKekieeke 29
                +++l+v+  s+t ++lK+ i + +
  MMETSP0890-20130614|2737_1 58 KFPLDVDLaSTTSADLKKIIDDSK 81
                577777752677788998887765 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 7.9e-05
                 BTTTTTT-TTEEEEEEES CS
  PF00240.18  50 tlseyniqdgstlhlvlr 67 
                 tl++y++++g+t+++ +r
  MMETSP0890-20130614|2737_1 106 TLKSYGVKKGDTIFMDVR 123
                 9**************987 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00042       2.9      55      72 .]       2      19 ..       1      19 [. 0.92
   2 ?    3.9   0.0    0.0056        38      55      68 ..     105     118 ..      67     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00042
                SBGGGSS--TTEEEEEE- CS
   PF11976.3 55 dtvedldiedgdtidvvi 72
                +t+ d++i++++t+++v+
  MMETSP0890-20130614|2737_1  2 RTLSDYNIQKESTLHLVL 19
                699************996 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0056
                 SBGGGSS--TTEEE CS
   PF11976.3  55 dtvedldiedgdti 68 
                 dt++++++++gdti
  MMETSP0890-20130614|2737_1 105 DTLKSYGVKKGDTI 118
                 79***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.91
# Mc/sec: 400.27
//
Query:       MMETSP0890-20130614|2739_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.4   0.4      0.088   12.4   0.1    1.6  2  PF05443.6  ROS/MUCR transcriptional regulator protein
      0.056   13.2   0.6      0.084   12.6   0.4    1.3  1  PF00137.16 ATP synthase subunit C


Domain annotation for each model (and alignments):
>> PF05443.6  ROS/MUCR transcriptional regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.26   1.8e+03      12      26 ..      22      36 ..      18      41 .. 0.78
   2 ?   12.4   0.1   1.3e-05     0.088      11      62 ..      50     100 ..      40     105 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.26
   PF05443.6 12 eivsayvsnnsvsae 26
                 i  ay+++n++  +
  MMETSP0890-20130614|2739_1 22 GIALAYFAENQIVRA 36
                688899999998665 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.3e-05
   PF05443.6  11 aeivsayvsnnsvsaeelpalikevhaaLkslskkaeaeaeaaeaekakPav 62 
                 a++ + +++ + ++++ l + ++++ +aL++++ + ++e++ +e+e+++Pa 
  MMETSP0890-20130614|2739_1  50 AKMSAMFMEDEVMPETGLDETVRRMEEALAKAKGEDATEEK-KEEESERPAK 100
                 55556688889999*******************98776554.4666777763 PP

>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   1.2e-05     0.084       5      25 ..       9      29 ..       6      38 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
  PF00137.16  5 gaglavglaalgagigigiag 25
                  g+avg+a++g+gi+ ++ +
  MMETSP0890-20130614|2739_1  9 VTGVAVGVAGFGSGIALAYFA 29
                689************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       724  (0.0529549); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.98
# Mc/sec: 261.64
//
Query:       MMETSP0890-20130614|2740_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   30.9   2.3     0.0022   17.6   0.0    2.1  2  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.0   5.8e-06     0.079      29      41 .]       8      20 ..       2      20 .. 0.87
   2 !   17.6   0.0   1.6e-07    0.0022       1      24 [.      22      45 ..      21      51 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.8e-06
                HHHHHHHHHHHHT CS
  PF00514.18 29 qeeAawALsNLaa 41
                +e+Aa+AL+NLaa
  MMETSP0890-20130614|2740_1  8 KENAAAALWNLAA 20
                89*********96 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1.6e-07
                CHHHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18  1 spenkqavieaGavppLvqLLksg 24
                +  nk a+ +aGa++pL +LL+sg
  MMETSP0890-20130614|2740_1 22 NANNKIAIANAGAIQPLNDLLSSG 45
                4579******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:01.11
# Mc/sec: 112.26
//
Query:       MMETSP0890-20130614|2748_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.73
# Mc/sec: 124.74
//
Query:       MMETSP0890-20130614|2751_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.6   1.7       0.11   12.3   1.2    1.7  1  PF13424.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   7.7e-06      0.11      18      53 ..      70     106 .]      48     106 .] 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.7e-06
   PF13424.1  18 lgdydeAlelyekalel.lrelgddhpdtaralnnla 53 
                   dyd A e++  a  l  +++g ++   a+al+nla
  MMETSP0890-20130614|2751_1  70 SDDYDLAYEHLSAARGLaEKLYGIHSEHFATALYNLA 106
                 58***************888889999999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 403.20
//
Query:       MMETSP0890-20130614|2747_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-13   50.9   0.0    3.8e-13   49.3   0.0    1.8  2  PF03109.11 ABC1 family
     0.0008   18.5   0.1      0.036   13.0   0.0    2.8  2  PF00069.20 Protein kinase domain
     0.0026   17.4   1.1      0.046   13.3   0.7    2.6  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.21   11.0   0.0    1.3  1  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.1e-16   3.8e-13       3     107 ..      89     194 ..      87     202 .. 0.95
   2 ?   -2.1   0.0      0.97   3.3e+03      77      97 ..     407     427 ..     392     433 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.1e-16
  PF03109.11   3 lgkpveevFaefdeePlAaASiaQVHrA.vlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskea..rldleelvdelskelaeeldfkrEAknaekfrenf 107
                 lgk++++ ++ f+   ++++ iaQVHr+ +l+++++ a K  +p+v+ ++++Dl  l   ++ll+++ +    ++d    + +++k+++  + +++EA+n +++r+n 
  MMETSP0890-20130614|2747_1  89 LGKEWHKNYSVFEA--IGSGVIAQVHRGiRLSDNKALAFKLVHPRVRVQLEQDLIALAAGVSLLETLVPALaeWYDPSGALTQFAKSIRASVSMEKEAANLRRLRTNC 194
                 7999********87..***********967888**********************************9998899******************************9986 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.97
  PF03109.11  77 eelvdelskelaeeldfkrEA 97 
                  ++v+ + ++l  +ld+ +EA
  MMETSP0890-20130614|2747_1 407 VAIVEGIGRSLDPDLDLLQEA 427
                 567888888999999999998 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.1e-05     0.036       1     135 [.      97     281 ..      97     317 .. 0.75
   2 ?    1.1   0.0     0.047   1.6e+02     227     255 ..     349     377 ..     310     382 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.......................................HHHHHHHHH..-TTB--EEEEEEE..STEEEEEEE--SC-.EHHHHHH....HHCCB-HHHHHHHH..HHHHHHHHHHHHTCEE-S--SGGGEEEETT- CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.......................................Elkilkkls..Hpnivkllevfee..kdelylvleyvegg.dlfdllk....kegklseeeikkia..lqilegleylHsngiiHrDLKpeNiLldkkg 135
                 y++ e +GsG  ++V ++++ +++k  A K ++ + + + +++  ++                                       E++ l++l+  + + v l e + +  +    +++e +e+g  l+++++    ++ + +++++++++  + + + l+ l+ ++++H D+ p N+L+  ++
  MMETSP0890-20130614|2747_1  97 YSVFEAIGSGVIAQVHRGIRLSDNKALAFKLVHPRVRVQLEQDLIALaagvslletlvpalaewydpsgaltqfaksirasvsmekEAANLRRLRtnCGTGVALPEPILSldNGAHSILIETLEAGlPLAHAIReltqENMSAEYQTARSVLarRGLHCLLKMLFIDNFCHADMHPGNLLVRIQS 281
                 567899***************************99999988776555899999999999999999999999999999999999988888888885224455777665555667777899999999987777777664344444666666665224577788899999*************98443 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.047
                 SHHHHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF00069.20 227 sskseelkdlikkllekdpakRltaeeil 255
                 +   ++++ l++++l++d +k+lt+ +++
  MMETSP0890-20130614|2747_1 349 EAFVRDVTRLVNSILQEDTSKKLTLGRLK 377
                 22338999***************987765 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.7   1.3e-05     0.046     138     181 ..     238     278 ..      53     286 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-05
                 HHCTHHHHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE CS
  PF01636.18 138 asellelleeleervlaalaallpgaeppvllHgDlhpgNllvd 181
                  +e++  +  l++r l  l+++        ++H D hpgNllv+
  MMETSP0890-20130614|2747_1 238 SAEYQTARSVLARRGLHCLLKM---LFIDNFCHADMHPGNLLVR 278
                 3333333444444444444444...45799*************9 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.2e-05      0.21     118     158 ..     230     282 ..     217     320 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.2e-05
                 -EE-HHHHHHHHHHHHHHHTT----........EEEE-S------EEE....- CS
  PF01633.15 118 klinledlekeleeleklleekesp........vvfCHnDlqegNill....n 158
                 +  + e++  e++ ++++l +   +         +fCH D+++gN+l+    n
  MMETSP0890-20130614|2747_1 230 RELTQENMSAEYQTARSVLARRGLHcllkmlfiDNFCHADMHPGNLLVriqsN 282
                 56667778888888888886444445555555568************944440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:01.35
# Mc/sec: 812.99
//
Query:       MMETSP0890-20130614|2756_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   12.7   0.1       0.11   12.2   0.1    1.2  1  PF04611.7 Mating type protein A alpha Y mating type dependent binding region
      0.086   13.0   0.3       0.09   13.0   0.2    1.1  1  PF04880.8 NUDE protein, C-terminal conserved region
      0.096   11.6   0.3       0.11   11.4   0.2    1.0  1  PF05460.8 Origin recognition complex subunit 6 (ORC6)
       0.44   10.3   3.8        4.6    7.1   0.8    2.8  2  PF04508.7 Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> PF04611.7  Mating type protein A alpha Y mating type dependent binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.3e-05      0.11     110     141 ..      11      42 ..       8      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
   PF04611.7 110 lyteqvekWlvqvlevaerWkaemekqrahia 141
                 l++e v+k lv+ l  ae+W++e++k r  i+
  MMETSP0890-20130614|2756_1  11 LFIENVKKALVKELIQAEQWNEEIQKLREEIT 42 
                 799*************************9998 PP

>> PF04880.8  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.6e-05      0.09      22      68 ..      23      70 ..      14      93 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.6e-05
   PF04880.8 22 EldEkesLrvevqRLkDEarDLkq.Elivrerlrevnrksrpapvqas 68
                El   e   +e+q+L++E+ D  + E +v e+lre  r +r++   + 
  MMETSP0890-20130614|2756_1 23 ELIQAEQWNEEIQKLREEITDNAIfEEMVIEKLREFDRMKRMSKTENV 70
                6666788899***********8864668************99985544 PP

>> PF05460.8  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.3e-05      0.11     301     354 ..      19      73 ..      15      75 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
   PF05460.8 301 alvkewlegeeWfrei..ekkydyedgaeeeesqrkrekakeglGsMlqdrvdylS 354
                 alvke+++ e+W +ei  + +++ ++++ ee ++ k +++  ++  M  +++++lS
  MMETSP0890-20130614|2756_1  19 ALVKELIQAEQWNEEIqkLREEITDNAIFEEMVIEKLREFD-RMKRMSKTENVVLS 73 
                 799*************7767888888888888888855555.99999988888877 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.8    0.0013       4.6       1      12 [.      32      43 ..      32      43 .. 0.95
   2 ?    2.7   0.0     0.035   1.2e+02       1      21 [.      56      76 ..      56      77 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0013
   PF04508.7  1 rEldrlRrkIsd 12
                +E+++lR++I+d
  MMETSP0890-20130614|2756_1 32 EEIQKLREEITD 43
                8*********98 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.035
   PF04508.7  1 rEldrlRrkIsdLekqLsdcr 21
                rE dr++r+ + ++  Ls+c+
  MMETSP0890-20130614|2756_1 56 REFDRMKRMSKTENVVLSTCF 76
                788999998766666677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1214  (0.0887946); expected 273.4 (0.02)
Passed bias filter:                      917  (0.0670714); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.46s 00:00:00.91 Elapsed: 00:00:00.87
# Mc/sec: 261.67
//
Query:       MMETSP0890-20130614|2757_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-10   39.8   0.0    6.3e-10   39.2   0.0    1.3  1  PF00059.16 Lectin C-type domain


Domain annotation for each model (and alignments):
>> PF00059.16  Lectin C-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   4.6e-14   6.3e-10       9      85 ..      63     138 ..      56     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 4.6e-14
                 HHHHHHTT-EBS-HSSHHHHHHHHHHHCHCSSEEEESEEESSTTTCEB.TTT-B-STTCBSTTCSTSSCCTEEEEEE CS
  PF00059.16   9 ekaCqkegakLvsiqseeeqkflkslvkksnssaWiGlsdekkegefvwtdgssveytnwaegepnnkkskedCvel 85 
                 e +C+ +g+ L+s + + e +f+k ++ +++  a++Gl  e+ ++e+  +dgs+++y nwa+g+p+n+  +ed + l
  MMETSP0890-20130614|2757_1  63 ESVCALDGGALASLRTKTEYEFVKAMLDEKDVGAFVGLF-EYRSNEWLNVDGSPLAYMNWAPGQPDNWCLDEDVAFL 138
                 578***********************************9.88999**********************9877776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      610  (0.0446167); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:01.05
# Mc/sec: 661.85
//
Query:       MMETSP0890-20130614|2759_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 319.51
//
Query:       MMETSP0890-20130614|2763_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   62.1   2.8    1.9e-09   36.8   0.3    3.0  3  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0025   17.9   1.1     0.0067   16.5   0.7    1.8  1  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.017   13.0   0.0      0.023   12.5   0.0    1.2  1  PF05804.7  Kinesin-associated protein (KAP)
      0.065   12.2   0.0        0.1   11.5   0.0    1.3  1  PF04826.8  Armadillo-like
       0.11   12.9   1.6        2.5    8.6   0.2    2.4  2  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.062   1.7e+02      30      39 ..       7      16 ..       5      18 .. 0.84
   2 !   36.8   0.3   7.1e-13   1.9e-09       2      41 .]      20      59 ..      19      59 .. 0.95
   3 !   22.3   0.0   2.6e-08   7.2e-05       1      24 [.      60      83 ..      60      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.062
                HHHHHHHHHH CS
  PF00514.18 30 eeAawALsNL 39
                e Aa++L NL
  MMETSP0890-20130614|2763_1  7 EKAAGVLLNL 16
                779******9 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 7.1e-13
                HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41
                  n+ a+  aGa+ppLv+LL+sg    +e Aa+AL+NLaa
  MMETSP0890-20130614|2763_1 20 ANNRVAIAGAGAIPPLVNLLTSGTAIAKEKAAGALWNLAA 59
                6799**********************************96 PP

  == domain 3    score: 22.3 bits;  conditional E-value: 2.6e-08
                CHHHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18  1 spenkqavieaGavppLvqLLksg 24
                +++n+ a+ eaGa+p Lv+LL+sg
  MMETSP0890-20130614|2763_1 60 NNDNIVAIAEAGAIPSLVNLLTSG 83
                799*******************86 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.7   2.5e-06    0.0067      27      77 ..      26      85 ..       2      93 .] 0.72

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.5e-06
   PF13646.1 27 lgseealpaLlelLkdsdpevRraAaeaLgkl..........gdpealpaLlklldddeda 77
                ++ + a+p+L+ lL++  +  +++Aa aL +l          ++  a+p L+ ll++ + a
  MMETSP0890-20130614|2763_1 26 IAGAGAIPPLVNLLTSGTAIAKEKAAGALWNLaanndnivaiAEAGAIPSLVNLLTSGT-A 85
                445578***********************9994444433333477899****9998754.4 PP

>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.5e-06     0.023     352     422 ..      12      84 ..       6      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.5e-06
   PF05804.7 352 lllnlsfdtklrrkmvkaGllPklvslldddkk..kgialkvlyhlslddkvksmfaytdcikllmkallesl 422
                 +llnl f++++r  +  aG +P lv+ll + +   k+ a   l+ l+ +++    +a + +i+ l++ l +++
  MMETSP0890-20130614|2763_1  12 VLLNLLFNANNRVAIAGAGAIPPLVNLLTSGTAiaKEKAAGALWNLAANNDNIVAIAEAGAIPSLVNLLTSGT 84 
                 699*************************998753377888999999999888888999999999998776665 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.7e-05       0.1     135     186 ..      31      82 ..      12      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.7e-05
   PF04826.8 135 yisellsLLskGnektkvqvLkvllnlseNpamtreLlsakvpssllslfnk 186
                  i+ l++LL+ G    k +    l nl++N+++   + +a +  sl++l  +
  MMETSP0890-20130614|2763_1  31 AIPPLVNLLTSGTAIAKEKAAGALWNLAANNDNIVAIAEAGAIPSLVNLLTS 82 
                 5788999999999999999999999999999999999999999999988665 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0027       7.3      28      52 ..      30      54 ..       5      57 .. 0.75
   2 ?    8.6   0.2   0.00093       2.5       6      40 ..      52      83 ..      50      93 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0027
   PF13513.1 28 ellpaLlelLeddddeVReaAawAL 52
                 ++p+L++lL++  +  +e Aa+AL
  MMETSP0890-20130614|2763_1 30 GAIPPLVNLLTSGTAIAKEKAAGAL 54
                46777777776655555******98 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00093
   PF13513.1  6 aAawaLGrlaggeprllepavpellpaLlelLedd 40
                +A+w L+   +++++ ++ a   ++p L++lL++ 
  MMETSP0890-20130614|2763_1 52 GALWNLA---ANNDNIVAIAEAGAIPSLVNLLTSG 83
                7999996...99999999************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 332.63
//
Query:       MMETSP0890-20130614|2760_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 437.43
//
Query:       MMETSP0890-20130614|2768_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-32  109.3   0.0    7.3e-17   60.6   0.0    2.6  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      2e-23   82.0   0.0    7.8e-11   41.7   0.0    2.3  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.4e-10   40.0   0.0      2e-05   24.2   0.0    2.6  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
        1.5    6.9   3.7        1.8    6.6   2.5    1.1  1  PF03552.9  Cellulose synthase


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     7e-16   2.4e-12       1      69 [.     134     199 ..     134     200 .. 0.92
   2 !   60.6   0.0   2.1e-20   7.3e-17       1      70 []     224     293 ..     224     293 .. 0.99

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 7e-16
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +f++nLp++++e+ +   F+ fG+ +si+ + d etgr kg+a +eF +  +ae+A++   g  lggr++
  MMETSP0890-20130614|2768_1 134 VFCNNLPWSIDESAI---FEYFGKSKSIDWIEDrETGRFKGMAVIEFNTVTEAEAAVA-KSGGDLGGRTV 199
                 79**********987...5556888999******************************.********997 PP

  == domain 2    score: 60.6 bits;  conditional E-value: 2.1e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 lf+gnL++ ++++ +k++Fs  G i s+k v+d   g  kg++f+eFes + ++kA+  l+g  l gr++k
  MMETSP0890-20130614|2768_1 224 LFCGNLSYHIDDDAIKDFFSTAGIISSVKWVTDrDSGDFKGCGFIEFESTDMVDKAIT-LQGSSLLGRPIK 293
                 8*********************************************************.*********996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   2.7e-13   9.3e-10       1      69 []     134     200 ..     134     200 .. 0.95
   2 !   41.7   0.0   2.3e-14   7.8e-11       1      69 []     224     293 ..     224     293 .. 0.97

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.7e-13
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 +++ +lp+s++e+ ++e f++ +   +++ + ++  gr++g A +ef +  +A++a++k +  l+grt++
  MMETSP0890-20130614|2768_1 134 VFCNNLPWSIDESAIFEYFGKSK---SIDWIEDREtGRFKGMAVIEFNTVTEAEAAVAKSGGDLGGRTVY 200
                 799*****************986...7899999999********************************96 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 2.3e-14
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 l++++l++ ++++ +++ffs +g +++v+ + ++d g ++g +f+efes + ++ka++ ++ +l gr+i+
  MMETSP0890-20130614|2768_1 224 LFCGNLSYHIDDDAIKDFFSTAGIISSVKWVTDRDsGDFKGCGFIEFESTDMVDKAITLQGSSLLGRPIK 293
                 799**********************************************************999999986 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05     0.053       4      53 ..     148     201 ..     146     204 .. 0.87
   2 !   24.2   0.0   5.8e-09     2e-05       2      56 .]     239     297 ..     238     297 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   PF13893.1   4 lfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 +f+ fGk ++i   ++      +g A +ef tv +A+ a+++ +g +l+g+t+++
  MMETSP0890-20130614|2768_1 148 IFEYFGKSKSIDWIEDRetgrfKGMAVIEFNTVTEAEAAVAK-SGGDLGGRTVYC 201
                 78889999999988888899988*****************75.899******987 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 5.8e-09
   PF13893.1   2 yklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 +++fs  G + ++k   +      +g++f+ef++++  +ka+ +l+g  l g+++k +++
  MMETSP0890-20130614|2768_1 239 KDFFSTAGIISSVKWVTDRdsgdfKGCGFIEFESTDMVDKAI-TLQGSSLLGRPIKLDWA 297
                 6788999999888877777779999*****************.6**************98 PP

>> PF03552.9  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.5   0.00052       1.8     323     432 ..       5     115 ..       1     141 [. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00052
   PF03552.9 323 ekkkkakkkeseaeifeledieeglegdeeekssllsqkslekkfGqssvfvasilleeggvpeealdaalvkeaisviscgyed..ktewGkeiGwiyGsvtediltGfkm 432
                 e+k+ +kk++++ ei e+ed++++  +++++k++ +++k+ ++++ +    +++++ +  +  +++++++   ea + is    d  k   G++      s + di+tGf+ 
  MMETSP0890-20130614|2768_1   5 ERKSPVKKSKRKIEIEEIEDVDDA-PKKKRKKENGVEKKKKKRRLAEEHEDINATPAQIDEKEKKKKKKSKEVEAAKAISVNLVDeiKECVGDSKSSTIKSTSTDIVTGFHG 115
                 445567888889999999999986.667777888999999999**99999999999887777777788888888889998876552256689999999999999*****974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1585  (0.11593); expected 273.4 (0.02)
Passed bias filter:                      620  (0.0453482); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.79
# Mc/sec: 922.14
//
Query:       MMETSP0890-20130614|2780_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-09   35.7   0.0    7.3e-09   35.1   0.0    1.3  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   5.4e-13   7.3e-09       1      34 [.      68     104 .]      68     104 .] 0.90

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 5.4e-13
   PF08373.5   1 ieidGpthF..yrnsgvll.gktklKrriLtalGwkv 34 
                 +e+dGpth+  +++ +v + g tk+K riL++lGw v
  MMETSP0890-20130614|2780_1  68 VEVDGPTHYlkCKRKQVAKnGRTKFKSRILHQLGWTV 104
                 69*******88888877779***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.96
# Mc/sec: 259.61
//
Query:       MMETSP0890-20130614|2781_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-23   79.5   0.3    1.2e-14   53.4   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    2.8e-18   65.5   0.0    3.6e-18   65.1   0.0    1.2  1  PF13424.1  Tetratricopeptide repeat
    1.1e-16   60.1   0.8    1.4e-09   37.3   0.1    1.6  2  PF13414.1  TPR repeat
    3.8e-12   45.1   0.1    5.8e-09   35.0   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.4e-11   43.1   0.1      3e-08   32.7   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    6.2e-10   38.1   0.1    4.1e-07   29.2   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
      1e-06   27.9   0.1    5.8e-05   22.4   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
    7.4e-06   25.6   1.1    0.00018   21.3   0.4    2.7  2  PF13431.1  Tetratricopeptide repeat
    9.6e-06   25.6   0.0     0.0025   18.1   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    1.8e-05   25.1   0.0    2.4e-05   24.7   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
     0.0012   18.9   0.0     0.0032   17.6   0.0    1.7  2  PF07721.9  Tetratricopeptide repeat
     0.0048   16.8   0.0     0.0058   16.6   0.0    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.14   11.9   0.0    1.3  1  PF13371.1  Tetratricopeptide repeat
       0.11   12.1   0.0       0.16   11.6   0.0    1.3  1  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.4e-08   1.4e-05      19      42 .]       1      24 [.       1      24 [. 0.98
   2 !   53.4   0.0   1.2e-17   1.2e-14       3      42 .]      27      66 ..      27      66 .. 0.97

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.4e-08
   PF13374.1 19 eeAlaleeealairrrllGddHPd 42
                +eA +l+e+al i ++ lG++HPd
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISEEKLGPNHPD 24
                79*********************8 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 1.2e-17
   PF13374.1  3 aalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                ++lnnLA++l+++g+y+eA +l+e++l+i ++++G +HP+
  MMETSP0890-20130614|2781_1 27 STLNNLANLLADQGKYDEAMPLFERSLEIDEKVYGKNHPE 66
                59*************************************6 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   3.6e-21   3.6e-18      22      78 .]       1      58 [.       1      66 [. 0.98

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 3.6e-21
   PF13424.1 22 deAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                deA  lye+al +  ++lg++hpd+ ++lnnlanl++ +g+ydeA +++e++lei+ek
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRIsEEKLGPNHPDVPSTLNNLANLLADQGKYDEAMPLFERSLEIDEK 58
                89*****************************************************986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   1.4e-12   1.4e-09      20      68 ..       1      56 [.       1      57 [. 0.86
   2 !   26.7   0.0   2.9e-09   2.8e-06       4      35 ..      27      58 ..      24      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.4e-12
   PF13414.1 20 deAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                deA  +ye+Al+++     pn+++    ++nlA ++  +g +y+eA+  +e++le+d
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISeeklgPNHPDvpsTLNNLANLLADQG-KYDEAMPLFERSLEID 56
                79*********9966666666655555*************.6*************99 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 2.9e-09
   PF13414.1  4 ealkelGnalfkegdydeAieayekAleldpn 35
                 +l++l+n l  +g+ydeA  ++e++le+d++
  MMETSP0890-20130614|2781_1 27 STLNNLANLLADQGKYDEAMPLFERSLEIDEK 58
                679**************************943 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0014       1.3      18      32 ..       1      15 [.       1      17 [. 0.89
   2 !   35.0   0.0   5.9e-12   5.8e-09       3      33 ..      28      58 ..      26      59 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0014
                HHHHHHHHHHHHHHT CS
  PF00515.23 18 deAleyyekALelnP 32
                deA   ye+AL++ +
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISE 15
                89*********9975 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 5.9e-12
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALelnPn 33
                +l+nl+n++  +gkydeA   +e+ Le++++
  MMETSP0890-20130614|2781_1 28 TLNNLANLLADQGKYDEAMPLFERSLEIDEK 58
                79**************************985 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013       1.2      16      32 ..       1      17 [.       1      21 [. 0.74
   2 !   32.7   0.0   3.1e-11     3e-08       1      35 [.      28      62 ..      28      63 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
   PF13176.1 16 ekAielyeraLaltkdp 32
                ++A  lyeraL++ ++ 
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISEEK 17
                79*******66666555 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 3.1e-11
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdplda 35
                +l+nLa+l  ++g+y++A  l+er+L++++  +++
  MMETSP0890-20130614|2781_1 28 TLNNLANLLADQGKYDEAMPLFERSLEIDEKVYGK 62
                79**************************9988776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0047       4.6      18      32 ..       1      15 [.       1      17 [. 0.88
   2 !   29.2   0.0   4.2e-10   4.1e-07       3      32 ..      28      57 ..      26      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0047
                HHHHHHHHHHHHH-T CS
  PF07719.12 18 eeAleafekAleldP 32
                +eA  ++e+Al++  
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISE 15
                79*********9975 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 4.2e-10
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldP 32
                 l+nl+++++ +g+y+eA  +fe++le+d 
  MMETSP0890-20130614|2781_1 28 TLNNLANLLADQGKYDEAMPLFERSLEIDE 57
                699*************************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.058        57      18      32 ..       1      15 [.       1      17 [. 0.89
   2 !   22.4   0.0     6e-08   5.8e-05       3      32 ..      28      57 ..      26      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.058
                HHHHHHHH---HHHH CS
   PF13181.1 18 dkAkeylekalelkp 32
                d+A+  +e+al ++ 
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISE 15
                899********9985 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 6e-08
                -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkp 32
                +++nl+ ++++ G+yd+A+  +e+ le++ 
  MMETSP0890-20130614|2781_1 28 TLNNLANLLADQGKYDEAMPLFERSLEIDE 57
                689*************************96 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.4   1.9e-07   0.00018       1      32 [.       6      45 ..       6      46 .. 0.78
   2 ?    1.3   0.0      0.47   4.6e+02       1      10 [.      48      57 ..      48      60 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.9e-07
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeA 32
                lye+al+++     Pn+   +  +nnLA+ll+++G+++eA
  MMETSP0890-20130614|2781_1  6 LYERALRISeeklgPNHpdvPSTLNNLANLLADQGKYDEA 45
                57788888644555444555******************99 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.47
   PF13431.1  1 lyekaleldP 10
                l+e++le+d 
  MMETSP0890-20130614|2781_1 48 LFERSLEIDE 57
                69*****996 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.022        22      18      32 ..       1      20 [.       1      25 [. 0.70
   2 !   18.1   0.0   2.6e-06    0.0025       2      32 ..      27      57 ..      26      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.022
   PF13428.1 18 deAiallrrala.....laP 32
                deA+ l++ral+     l+P
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRiseekLGP 20
                79********9844444455 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.6e-06
   PF13428.1  2 eallalarallalGdpdeAiallrralalaP 32
                 +l  la++l+++G +deA+ l++r l+ + 
  MMETSP0890-20130614|2781_1 27 STLNNLANLLADQGKYDEAMPLFERSLEIDE 57
                56789*********************99875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.5e-08   2.4e-05      14      61 ..       1      56 [.       1      60 [. 0.93

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.5e-08
   PF13432.1 14 deAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalala 61
                deA +++e+al+          P+ +  l +la +l+++g++deA  l+++ l+++
  MMETSP0890-20130614|2781_1  1 DEAMPLYERALRISeeklgpnhPDVPSTLNNLANLLADQGKYDEAMPLFERSLEID 56
                78999**99999999****99****************************9999766 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.5   3.4e+03      18      22 ..       8      12 ..       1      16 [. 0.59
   2 !   17.6   0.0   3.3e-06    0.0032       2      26 .]      27      51 ..      26      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 3.5
                ---HH CS
   PF07721.9 18 deAra 22
                ++A++
  MMETSP0890-20130614|2781_1  8 ERALR 12
                45555 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 3.3e-06
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                 +l +LA +l+++G +deA  l+er
  MMETSP0890-20130614|2781_1 27 STLNNLANLLADQGKYDEAMPLFER 51
                67889**************999997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.9e-06    0.0058       7      54 ..       2      56 ..       1      65 [. 0.69

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.9e-06
                HHHHHHHHHCCC-ST.....-HHHH....CHHHHHHHHHH---HHHHHHHHHC.TSHC CS
   PF12895.2  7 nAlflaekllaespk.....dpeda....ylyalAlclylngeykrAyellrk.leld 54
                +A+ l+e++l  s +               l +lA+ l  +g+y++A+ l+++ le+d
  MMETSP0890-20130614|2781_1  2 EAMPLYERALRISEEklgpnH---PdvpsTLNNLANLLADQGKYDEAMPLFERsLEID 56
                688888888888876555431...1334355557999999999999999998875544 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.14      11      60 ..       7      57 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
   PF13371.1 11 ferALavverllll.aPddpyerRDrGlllaqlgclaaAaedLeaflelcp 60
                +erAL+++e  l   +Pd p+ +   + lla +g + +A+  +e+ le ++
  MMETSP0890-20130614|2781_1  7 YERALRISEEKLGPnHPDVPSTLNNLANLLADQGKYDEAMPLFERSLEIDE 57
                677777777766656999***************************998765 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.16       8      35 ..      33      58 ..      29      59 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00017
                HHHHHHTT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7  8 AaefynkkkyqeArelfsYallaildke 35
                A  + +++ky+eA  l  ++ +  +d++
  MMETSP0890-20130614|2781_1 33 ANLLADQGKYDEAMPL--FERSLEIDEK 58
                667899**********..6688887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.87
# Mc/sec: 184.55
//
Query:       MMETSP0890-20130614|2775_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-06   25.4   0.5     0.0018   17.7   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)
      0.001   18.6   0.0       0.25   10.9   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
       0.12   11.8   0.1        5.7    6.5   0.1    2.0  2  PF04542.9  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.9e-07    0.0018      17      36 ..       8      31 ..       6      31 .. 0.90
   2 !    6.0   0.0    0.0017         8      17      31 ..      45      63 ..      42      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.9e-07
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         FN+Q+IANt
  MMETSP0890-20130614|2775_1  8 LFNAIAdaalEKLDKFNAQDIANT 31
                88999999999999*********9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0017
   PF07671.6 17 LlaAIr....rnaerFNpQ 31
                L++AI+    +    FNpQ
  MMETSP0890-20130614|2775_1 45 LFNAIAaaalKKLDGFNPQ 63
                999**99999********9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   5.5e-05      0.25      20      50 ..       7      37 ..       4      41 .. 0.93
   2 !    6.2   0.0    0.0016       7.5      19      41 ..      43      65 .]      38      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.5e-05
  PF06743.10 20 effeklasalereLdsispelllnlvwSlcl 50
                ++f+++a a  ++Ld+++ ++  n+ w+++ 
  MMETSP0890-20130614|2775_1  7 ALFNAIADAALEKLDKFNAQDIANTTWAFAT 37
                799**************************96 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0016
  PF06743.10 19 eeffeklasalereLdsispell 41
                  +f+++a a  ++Ld+++p++l
  MMETSP0890-20130614|2775_1 43 PDLFNAIAAAALKKLDGFNPQAL 65
                5699****************986 PP

>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0013       5.7      34      57 ..      16      38 ..      12      42 .. 0.88
   2 ?    4.6   0.0    0.0047        22      20      43 ..      39      62 ..      36      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0013
                -HHHHHTTSS--HHHHHHHHHHHH CS
   PF04542.9 34 llraverfdpergvkfsawlltii 57
                +l+++++f+ +++++ ++w++ ++
  MMETSP0890-20130614|2775_1 16 ALEKLDKFN-AQDIANTTWAFATA 38
                78999****.9999******9987 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0047
                TS-HHHHHH------HHHHHTTSS CS
   PF04542.9 20 gadaeDlvQeaflrllraverfdp 43
                +++a Dl++ + +++l++++ f+p
  MMETSP0890-20130614|2775_1 39 SVEAPDLFNAIAAAALKKLDGFNP 62
                6799****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 273.27
//
Query:       MMETSP0890-20130614|2786_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-33  114.2   0.0    3.7e-33  114.0   0.0    1.0  1  PF04051.11 Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> PF04051.11  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0   2.7e-37   3.7e-33       1     150 [.      16     163 ..      16     165 .. 0.94

  Alignments for each domain:
  == domain 1    score: 114.0 bits;  conditional E-value: 2.7e-37
  PF04051.11   1 lfalLlqelVsyalr.qedeeevekkLeklGyrvGlrliErllarakaskrfkdildvlkfickdlWklvFgkqadnlktnhergeyvlldnepplsefvelveersklsylafvcGiirGaLeslgfkaevtaevselrkprtkfeikve 150
                 lfal++++ V ++++  ed++ v++kL+++Gy++G+rli+++la+ + ++ + d+ ++++ i+k ++k+++g++++++++n ++  ++ll +e+pl++fve ++ +++l y++++cG+irGaLe++++++++ + +++lr++  + ei++e
  MMETSP0890-20130614|2786_1  16 LFALTYGAHVVQLMKdLEDVQLVNEKLDQMGYNIGTRLIDEFLAK-SGTNSCGDFTETADKIAKIGFKMFLGITVEVANWNTDKTACSLLLYENPLTDFVEIPP-STDLFYSNVICGVIRGALEMVQIDSTCYFIRDTLRGD-DVNEIRLE 163
                 69************954499*************************.8***********************************97799999999********999.89********************************888.88888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 536.18
//
Query:       MMETSP0890-20130614|2787_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-07   29.7   1.3      2e-06   27.3   0.0    2.5  3  PF00400.27 WD domain, G-beta repeat
     0.0025   15.9   1.8       0.24    9.4   0.1    2.0  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.12   11.6   0.1        0.5    9.6   0.0    1.8  1  PF03498.9  Cytolethal distending toxin A/C family


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.14   6.5e+02      34      39 .]       1       6 [.       1       6 [. 0.90
   2 ?   -0.8   0.0      0.31   1.4e+03       1      12 [.      10      20 ..      10      25 .. 0.67
   3 !   27.3   0.0   4.4e-10     2e-06      13      39 .]      26      53 ..      24      53 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.14
                EEEEEE CS
  PF00400.27 34 tirlWd 39
                t+++W+
  MMETSP0890-20130614|2787_1  1 TCKIWN 6 
                89***7 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.31
                TEEEEEEESSSS CS
  PF00400.27  1 geckatlrgHts 12
                gec+ tl++  s
  MMETSP0890-20130614|2787_1 10 GECLETLEHN-S 20
                5788888776.4 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 4.4e-10
                SEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27 13 pVtcvafspd.gpllasgSrDgtirlWd 39
                +V+ va+sp+  + lasg +D ++r+W+
  MMETSP0890-20130614|2787_1 26 AVRTVAWSPSnETQLASGADDEKVRIWN 53
                79*************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   5.3e-05      0.24     244     281 ..       3      38 ..       1      45 [. 0.73
   2 !    7.7   0.8   0.00017      0.76     229     253 ..      35      59 ..      22      62 .] 0.72

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.3e-05
   PF11715.3 244 RvWnletgqclrttdileaaellpadslsyipepsess 281
                 ++Wn+++g cl+t + +  + +l++    ++++ps ++
  MMETSP0890-20130614|2787_1   3 KIWNISNGECLETLEHN--SYVLNTAVRTVAWSPSNET 38 
                 9*********9999998..5556666666666666554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00017
   PF11715.3 229 egqtfvftlsrDgkLRvWnletgqc 253
                 +++t +++   D k+R+Wn++t  c
  MMETSP0890-20130614|2787_1  35 SNETQLASGADDEKVRIWNTDTSDC 59 
                 566666677789***********99 PP

>> PF03498.9  Cytolethal distending toxin A/C family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011       0.5       4      66 ..       4      61 ..       1      62 [] 0.69

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00011
                EE-.----EEEE-S-STT-BE...EEE-GGG-TT---TT-.EEE----TT-BEEEES----EEE CS
   PF03498.9  4 lrsletGalLtvwalasrnwlktnWelteidskefgklrd.klldkknaglvqfknvdegtCla 66
                + ++++G+ L+   l++++++      t + + +     + +l+++ + + v++ n d+++C++
  MMETSP0890-20130614|2787_1  4 IWNISNGECLET--LEHNSYV-L---NTAVRTVAWSPSNEtQLASGADDEKVRIWNTDTSDCVE 61
                567777777777..4444444.3...34555555555555578999999*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 232.15
//
Query:       MMETSP0890-20130614|2788_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   71.1   7.3    7.5e-05   22.2   0.3    4.4  4  PF13516.1  Leucine Rich repeat
    5.6e-14   51.7   0.0    8.7e-14   51.0   0.0    1.3  1  PF04564.10 U-box domain
    3.2e-08   32.8   6.6    4.4e-05   22.8   0.2    2.7  3  PF12799.2  Leucine Rich repeats (2 copies)
    1.2e-07   30.6   0.2        2.1    8.6   0.0    4.7  4  PF00560.28 Leucine Rich Repeat
      2e-07   30.5   4.5    6.8e-05   22.4   1.1    2.7  2  PF13855.1  Leucine rich repeat
    0.00019   21.0   4.4        4.3    7.8   0.1    4.6  4  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.027   14.5   0.1         18    5.4   0.0    3.6  3  PF08032.7  RNA 2'-O ribose methyltransferase substrate binding
      0.063   12.6   0.0       0.12   11.7   0.0    1.5  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   2.1e-07   0.00036       2      23 ..     154     175 ..     154     176 .. 0.94
   2 !   15.8   0.0   5.5e-06    0.0093       2      24 .]     182     204 ..     181     204 .. 0.92
   3 !   13.7   0.0   2.5e-05     0.043       2      24 .]     210     232 ..     209     232 .. 0.94
   4 !   22.2   0.3   4.4e-08   7.5e-05       1      24 []     237     260 ..     237     260 .. 0.96

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.1e-07
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                 ++Lt+L L nN++gd+G+++La
  MMETSP0890-20130614|2788_1 154 STLTELYLTNNNLGDKGAQSLA 175
                 58*******************8 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 5.5e-06
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                 + L+ L Ls+N+i+ eG++a+an
  MMETSP0890-20130614|2788_1 182 TYLQKLFLSMNNISHEGAEAIAN 204
                 6699*****************97 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 2.5e-05
   PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                 k+L+ L + +N+ig eG+++La+
  MMETSP0890-20130614|2788_1 210 KTLRILYIWHNDIGPEGAKSLAK 232
                 7899*****************96 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 4.4e-08
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 +++L++L L nN+ig++G+ a+an
  MMETSP0890-20130614|2788_1 237 NTSLETLYLWNNNIGNDGADAIAN 260
                 789*******************97 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   5.1e-17   8.7e-14       1      71 [.      43     116 ..      43     118 .. 0.94

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 5.1e-17
                 --GGGB-TTT-SB-SSEEE-T..TT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHC CS
  PF04564.10   1 vPdefldpitlelmkdPvilP..sgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfleek 71 
                 vPd f++p++lelm dPv+l   sg+++++  + k l+ + k dP+t  +  ++    pn++lK++I+++  ++
  MMETSP0890-20130614|2788_1  43 VPDSFRCPLSLELMYDPVLLCteSGQSFEKVWLVKALQANPKQDPMTgLNYAKKLSFAPNRSLKQAIEEWKGKN 116
                 8*****************9864489**********************999999*****************8776 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   1.0   5.5e-05     0.095       2      37 ..     155     195 ..     154     208 .. 0.79
   2 !    9.9   0.1    0.0003      0.51       1      36 [.     182     222 ..     182     223 .. 0.80
   3 !   22.8   0.2   2.6e-08   4.4e-05       2      38 ..     211     252 ..     210     260 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.5e-05
   PF12799.2   2 nLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpis 37 
                  L++L+L+nNn+ d     l   l+  + L+ L Ls N+is
  MMETSP0890-20130614|2788_1 155 TLTELYLTNNNLGDkgaqsLATALSANTYLQKLFLSMNNIS 195
                 69**********8745444554499999************8 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0003
   PF12799.2   1 tnLevLdLsnNnIk.d....lppelanLpnLktLnLsnNpi 36 
                 t L++L Ls NnI+ +    + + l+  + L+ L++ +N i
  MMETSP0890-20130614|2788_1 182 TYLQKLFLSMNNIShEgaeaIANALSTSKTLRILYIWHNDI 222
                 67***********85244446666888999*********87 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 2.6e-08
   PF12799.2   2 nLevLdLsnNnI.....kdlppelanLpnLktLnLsnNpisd 38 
                  L+ L++ +N I     k+l   l++ ++L+tL+L nN+i +
  MMETSP0890-20130614|2788_1 211 TLRILYIWHNDIgpegaKSLAKALKSNTSLETLYLWNNNIGN 252
                 79********9977777788877*****************76 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       2.3       2      14 ..     156     168 ..     155     181 .. 0.82
   2 ?    5.2   0.0     0.015        26       2      14 ..     184     196 ..     183     208 .. 0.78
   3 ?    2.7   0.0       0.1   1.7e+02       2      13 ..     212     223 ..     211     236 .. 0.85
   4 !    8.6   0.0    0.0012       2.1       1      14 [.     239     252 ..     239     272 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0014
                 ESEEEETSSBCBC CS
  PF00560.28   2 LeeLdLsgNnlts 14 
                 L+eL+L +Nnl +
  MMETSP0890-20130614|2788_1 156 LTELYLTNNNLGD 168
                 9*********975 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.015
                 ESEEEETSSBCBC CS
  PF00560.28   2 LeeLdLsgNnlts 14 
                 L++L Ls Nn+++
  MMETSP0890-20130614|2788_1 184 LQKLFLSMNNISH 196
                 9**********96 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.1
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 L++L++ +N + 
  MMETSP0890-20130614|2788_1 212 LRILYIWHNDIG 223
                 9********885 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0012
                 TESEEEETSSBCBC CS
  PF00560.28   1 nLeeLdLsgNnlts 14 
                 +Le+L+L +Nn+ +
  MMETSP0890-20130614|2788_1 239 SLETLYLWNNNIGN 252
                 79*********985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.1     4e-08   6.8e-05       2      61 .]     155     222 ..     154     222 .. 0.81
   2 !    8.1   0.0    0.0011       1.9      44      61 .]     233     250 ..     228     258 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4e-08
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkgl....snLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61 
                  L+eL+L+nN+l + +  ++       + L++L Ls nn++    +  ++a++  + Lr L++++N++
  MMETSP0890-20130614|2788_1 155 TLTELYLTNNNLGDKGAQSLATAlsanTYLQKLFLSMNNIShegaEAIANALSTSKTLRILYIWHNDI 222
                 79*************66665543355599***********74444445566***************97 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0011
   PF13855.1  44 afkgLpsLreLnLsgNrl 61 
                 a+k+ +sL+ L+L++N++
  MMETSP0890-20130614|2788_1 233 ALKSNTSLETLYLWNNNI 250
                 566666777777777765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1      0.01        18       2      14 ..     155     167 ..     154     174 .. 0.88
   2 ?    2.3   0.0      0.18     3e+02       1      13 [.     182     194 ..     182     197 .. 0.85
   3 ?    2.8   0.0      0.12     2e+02       2      13 ..     211     222 ..     210     230 .. 0.87
   4 !    7.8   0.1    0.0025       4.3       1      13 [.     238     250 ..     238     253 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.01
   PF13504.1   2 nLkeLdLsgnrLt 14 
                  L+eL+L +n+L 
  MMETSP0890-20130614|2788_1 155 TLTELYLTNNNLG 167
                 69********996 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.18
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 ++L++L Ls n++
  MMETSP0890-20130614|2788_1 182 TYLQKLFLSMNNI 194
                 68******99987 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.12
   PF13504.1   2 nLkeLdLsgnrL 13 
                  L+ L++++n++
  MMETSP0890-20130614|2788_1 211 TLRILYIWHNDI 222
                 699*******87 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.0025
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 ++L++L+L++n++
  MMETSP0890-20130614|2788_1 238 TSLETLYLWNNNI 250
                 69*********97 PP

>> PF08032.7  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.11     2e+02       8      31 ..      60      84 ..      58     116 .. 0.73
   2 ?    2.4   0.0     0.094   1.6e+02      12      44 ..     150     182 ..     146     221 .. 0.72
   3 ?    5.4   0.0     0.011        18       3      28 ..     225     250 ..     225     267 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.11
   PF08032.7  8 VeeALksgpriekllvteg.radkr 31
                V+ + +sg+ +ek+++ +  +a+++
  MMETSP0890-20130614|2788_1 60 VLLCTESGQSFEKVWLVKAlQANPK 84
                66667889899***99999877777 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.094
   PF08032.7  12 Lksgpriekllvtegradkrleellklakkkgi 44 
                 ++++  +++l++t+++ +++  + l+ a ++++
  MMETSP0890-20130614|2788_1 150 IANDSTLTELYLTNNNLGDKGAQSLATALSANT 182
                 566677888988888666664444444444444 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.011
   PF08032.7   3 eGlhaVeeALksgpriekllvtegra 28 
                 eG ++   ALks+  +e+l++ +++ 
  MMETSP0890-20130614|2788_1 225 EGAKSLAKALKSNTSLETLYLWNNNI 250
                 799999******988******99944 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.2e-05      0.12      11      49 ..      46      85 ..      40      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.2e-05
                X-B-TTT-SB-SSEEEE.S----EEEHHHHHHHHTTT--B CS
   PF11789.3 11 slkCpltlkpfkePvts.kkCnHvFEkeaIlkmlkrkkkv 49
                s +Cpl+l+ + +Pv   ++   +FEk  ++k l+ + k 
  MMETSP0890-20130614|2788_1 46 SFRCPLSLELMYDPVLLcTESGQSFEKVWLVKALQANPKQ 85
                689***********975267799*********99776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.88
# Mc/sec: 743.42
//
Query:       MMETSP0890-20130614|2783_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-88  294.8   1.8    2.6e-87  292.2   0.1    2.4  2  PF00749.16 tRNA synthetases class I (E and Q), catalytic domain
    1.3e-38  132.3   0.1    2.7e-38  131.2   0.0    1.6  1  PF03950.13 tRNA synthetases class I (E and Q), anti-codon binding domain


Domain annotation for each model (and alignments):
>> PF00749.16  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.2   0.1   3.8e-91   2.6e-87       1     313 [.      75     417 ..      75     418 .. 0.95
   2 ?   -3.0   0.1      0.28   1.9e+03     133     160 ..     631     658 ..     621     661 .. 0.69

  Alignments for each domain:
  == domain 1    score: 292.2 bits;  conditional E-value: 3.8e-91
                 S--EEE--------B---HHHHHHHHHHCCCT--.....-EEEEE----CCC--HHHHHHHHHHHHH---------EEGGGGHHHHHHHHHHHHH---EEEE-S-HHHHHHHHHH.S..............................---.TTTT.-HHHHHHCHHHHHHHHHH-----EEEE-S-TT-S..CCCSCSCEEEEEESGGGS-S-EEE--SEEE-HHHHHHHHHHH----EEEEEGGGCCCHHHHHHHHHCSS-S--EEEEEE--B-CTTSB-SCCCCHHCHHCCCHHH---TCCCCHHHHHT----HHHHHHHHHHHHHHCCS-GGC-HHHHHCHHHHHHH CS
  PF00749.16   1 kVrtrfaPsPtGyLHiGhaktallnyllAkkanG.....kfilRieDTdperekeeaeesiledlkwlglkwdekptrqSdrfdelkkyaeeLiekGkaYvcfctkEeleeereeqe..............................klgskerdrydeenlklfeeemkkgeaegekavlRlkideesp..vemrDlvrgrikfepselhdlvllksdgyPtYdfavvidDalmeiThvlrgeeflantpkyiwllealglevppfahlslllnlegkklSKRklsllvdislvkeegdlreallnflarlGwspeaeeefltreeliksfdlnresksleafdkkkLe 313
                 +Vrtrf+P+P+GyLHiGhak++ +n+ lA ++ G     + i R +DT+pe+e+ee+++s   d++w+g+++  ++ ++Sd+fd l+++a +Li   kaYvc++++ e+e+ r+ ++                               + + ++ r++ +n+klf + m+ g++++++ +lRlk+ ++++   +m+D+v++rikf+p   h++v++++++yPtYd+++++ Dal+++  ++++ ef +++++y+w+l+al+++ +p ++++++lnl++++lSKRkl+ lvd++ v++++d+r++++++++r+G+s++a++ f+t  +++++  ++ e+++le f++ +Le
  MMETSP0890-20130614|2783_1  75 SVRTRFPPEPNGYLHIGHAKSMNMNFSLAFAKLGfvqnpETIFRYDDTNPEKETEEFVQSLRYDVEWMGWSP-FQVSHTSDYFDVLYALALKLIDADKAYVCDQSAAEIEACRKVAKarlaikalsaekkeissalraeaklddpdaDKSPYRKIRSVAQNRKLF-QLMRAGAYDEGSRTLRLKMMNKGDgnLNMMDQVAYRIKFKP---HPHVGDTWCIYPTYDYTHCVIDALEHVDYSICTLEFETRRESYYWVLDALDIY-RPKVFEMSRLNLTYTVLSKRKLTKLVDSKRVRGWDDPRMPTISGMRRRGFSAKAINAFCTDIGVTRNE-NHVEYERLEHFVRLDLE 417
                 59************************999876554444489*******************************.9****************************************98899************************99954444566799********.89*****************999887799*************...*****************************************************.8899***************************************************************9.999******99998775 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.28
                 HHHHHHH-----EEEE-S-TT-SCCCSC CS
  PF00749.16 133 emkkgeaegekavlRlkideespvemrD 160
                 ++k++++++e+  lRlk +  ++++ +D
  MMETSP0890-20130614|2783_1 631 KKKERSRKDEQEALRLKKESLKSISPTD 658
                 5667788888888888888776665555 PP

>> PF03950.13  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.0     4e-42   2.7e-38       1     174 []     420     604 ..     420     604 .. 0.92

  Alignments for each domain:
  == domain 1    score: 131.2 bits;  conditional E-value: 4e-42
  PF03950.13   1 ApRymaVldpvkvtienlpeg....keeelevplhpknpelgerevpfskeiyiereD........akrlkpgeevrLkelynikveevekdesgevtelkleydgesleearkkkgiihWvsaeeaveaevrlYdrLfkeed.de.dfl..lnpdslkvleeglaepalanlkkgdivQfeRiGYfrvd 174
                 A+R+ aV++p++v ++n++++     ++++++p +p  p+  + +v +++++yi+ +D        ++ l+ g+ vrL++++ni+++++++ e++    l++++ ++ l     +kg+ihW+s+++ + +e+r Yd+Lfk+++ d+ d+   lnp+s+kv+  g++ +++ n+k+ + vQfeR GY++vd
  MMETSP0890-20130614|2783_1 420 AKRRLAVKQPLRVHLTNFNDKfantMVKSFNAPEFPGSPNDNHYQVNLTPTVYIDSNDfqakevddFFGLTIGKVVRLRHCVNIRCDSITRTEKNAAPILNCTIVDDVL----DPKGKIHWLSEADITACEFRDYDHLFKTTKiDDdDWEnqLNPNSEKVF-FGFVHKSMLNAKPLESVQFERLGYYVVD 604
                 89***************96666667999*************************************************************9999988899*******888....9**********999999********99666555333355*******95.9*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.94
# Mc/sec: 1827.86
//
Query:       MMETSP0890-20130614|2803_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-30  102.9   2.4    3.2e-11   42.4   0.2    3.0  3  PF00514.18 Armadillo/beta-catenin-like repeat
    1.9e-06   27.9   0.7      8e-06   25.9   0.3    2.0  1  PF13646.1  HEAT repeats
    0.00021   21.6   2.5        0.3   11.6   0.1    3.0  3  PF13513.1  HEAT-like repeat
     0.0015   16.5   0.0     0.0016   16.4   0.0    1.0  1  PF05804.7  Kinesin-associated protein (KAP)
     0.0016   18.2   0.5       0.23   11.5   0.0    2.9  3  PF02985.17 HEAT repeat
     0.0017   17.4   0.0       0.13   11.2   0.0    2.0  2  PF04826.8  Armadillo-like
  ------ inclusion threshold ------
      0.031   13.8   0.3       0.16   11.5   0.2    1.9  1  PF09759.4  Spinocerebellar ataxia type 10 protein domain
        4.2    7.9   6.0          5    7.7   0.3    3.1  3  PF03130.11 PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.2   1.9e-14   3.2e-11       4      40 ..       2      38 ..       1      39 [. 0.95
   2 !   42.0   0.0   2.5e-14   4.3e-11       1      41 []      41      81 ..      41      81 .. 0.98
   3 !   17.6   0.0   1.3e-06    0.0022       1      24 [.      83     106 .]      82     106 .] 0.89

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.9e-14
                HHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  4 nkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                n  a+ eaGa+ppLv+LL+sg  + +e+Aa+AL+NLa
  MMETSP0890-20130614|2803_1  2 NQVAIAEAGAIPPLVNLLTSGTADAKENAAGALCNLA 38
                677999******************************9 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 2.5e-14
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41
                +++nk a+ eaGa+pp+v+LL+sg    +e+Aa+AL+NLaa
  MMETSP0890-20130614|2803_1 41 NDHNKVAIAEAGAIPPFVDLLTSGTAIAKEYAAGALWNLAA 81
                799************************************96 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 1.3e-06
                 CHHHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18   1 spenkqavieaGavppLvqLLksg 24 
                 +++n  ++ ea a+p+Lv+LL+sg
  MMETSP0890-20130614|2803_1  83 NDQNQVTIAEADAIPALVDLLSSG 106
                 678889999************985 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3   4.7e-09     8e-06       1      72 [.      12     104 ..      12     106 .] 0.87

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.7e-09
   PF13646.1   1 leaLlaaLekdpdpevraaaieaLg...........qlgseealpaLlelLkdsdpevRraAaeaLgkl...........gdpealpaLlklld 72 
                 +++L+++L ++  ++ +++a+ aL+            ++++ a+p+ ++lL++  +  ++ Aa aL +l           ++ +a+paL++ll 
  MMETSP0890-20130614|2803_1  12 IPPLVNLL-TSGTADAKENAAGALCnlafnndhnkvAIAEAGAIPPFVDLLTSGTAIAKEYAAGALWNLaanndqnqvtiAEADAIPALVDLLS 104
                 689***99.9999************999999998888888899************************99555554444444899*******996 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00018       0.3      28      52 ..      10      34 ..       2      37 .. 0.90
   2 ?    5.1   0.0     0.019        32      29      52 ..      53      76 ..      44      79 .. 0.74
   3 !    7.2   0.2    0.0042       7.2       6      38 ..      74     104 ..      72     106 .] 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00018
   PF13513.1 28 ellpaLlelLeddddeVReaAawAL 52
                 ++p+L++lL++  ++ +e+Aa+AL
  MMETSP0890-20130614|2803_1 10 GAIPPLVNLLTSGTADAKENAAGAL 34
                589*********************9 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.019
   PF13513.1 29 llpaLlelLeddddeVReaAawAL 52
                ++p++++lL++  +  +e+Aa+AL
  MMETSP0890-20130614|2803_1 53 AIPPFVDLLTSGTAIAKEYAAGAL 76
                6777777776555555*******9 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0042
   PF13513.1   6 aAawaLGrlaggeprllepavpellpaLlelLe 38 
                 +A+w L+  a++ ++++  a  +++paL++lL+
  MMETSP0890-20130614|2803_1  74 GALWNLA--ANNDQNQVTIAEADAIPALVDLLS 104
                 7999997..555555566699999999998885 PP

>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.1e-07    0.0016     321     418 ..       2     103 ..       1     106 [] 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 9.1e-07
   PF05804.7 321 nkdemeeldivekllkllpiehedllkvtlklllnlsfdtklrrk.mvkaGllPklvslldddkk..kgialkvlyhlsl.ddkvksmfaytdcikllmkal 418
                 n+  ++e + +  l+ ll +   d  + +   l nl+f+ +  +  + +aG +P +v ll + +   k+ a   l+ l+  +d+ +  +a +d+i+ l++ l
  MMETSP0890-20130614|2803_1   2 NQVAIAEAGAIPPLVNLLTSGTADAKENAAGALCNLAFNNDHNKVaIAEAGAIPPFVDLLTSGTAiaKEYAAGALWNLAAnNDQNQVTIAEADAIPALVDLL 103
                 6677889999999*************************998766515579**********99874337788888998875268888999*******999865 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00014      0.23       2      28 ..      12      38 ..      11      40 .. 0.95
   2 ?    3.3   0.0     0.057        97       2      29 ..      54      81 ..      53      82 .. 0.89
   3 ?   -0.5   0.0      0.94   1.6e+03       2      10 ..      96     104 ..      95     105 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
                HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17  2 lPlllkllnDpspeVReaAaeaLgala 28
                +P+l++ll++ +++ +e+Aa aL++la
  MMETSP0890-20130614|2803_1 12 IPPLVNLLTSGTADAKENAAGALCNLA 38
                8************************98 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.057
                HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17  2 lPlllkllnDpspeVReaAaeaLgalae 29
                +P+++ ll++ ++  +e Aa aL +la 
  MMETSP0890-20130614|2803_1 54 IPPFVDLLTSGTAIAKEYAAGALWNLAA 81
                799******9999999999999998885 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.94
                 HHHHHHHHT CS
  PF02985.17   2 lPlllklln 10 
                 +P+l+ ll+
  MMETSP0890-20130614|2803_1  96 IPALVDLLS 104
                 799999997 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0011       1.8      46      88 ..       2      44 ..       1      50 [. 0.85
   2 !   11.2   0.0   7.6e-05      0.13     120     181 ..      35     100 ..      34     105 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0011
   PF04826.8 46 nqdiirelggipiianllsksnpevkekalnalnnlsvnvenq 88
                nq  i e g ip + nll +  +  ke+a  al nl+ n++ +
  MMETSP0890-20130614|2803_1  2 NQVAIAEAGAIPPLVNLLTSGTADAKENAAGALCNLAFNNDHN 44
                7889999999999999999999999999999999999887755 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 7.6e-05
   PF04826.8 120 tnltvtneyqhllas...yisellsLLskGnektkvqvLkvllnlseNpamtr.eLlsakvpssll 181
                  nl+ +n+++ + +     i+ ++ LL+ G    k +    l nl++N++  + ++ +a++  +l+
  MMETSP0890-20130614|2803_1  35 CNLAFNNDHNKVAIAeagAIPPFVDLLTSGTAIAKEYAAGALWNLAANNDQNQvTIAEADAIPALV 100
                 67888888888765422279*************************998876651444566666665 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   9.6e-05      0.16       9      71 ..      33      93 ..      25     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.6e-05
   PF09759.4  9 lianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLlennkenqeliaeL 71
                 + nl+++n +++ ++ e ++++   +  +     +  kE a  a+ nL +nn++nq  iae 
  MMETSP0890-20130614|2803_1 33 ALCNLAFNNDHNKVAIAEAGAIPPFVDLLT--SGTAIAKEYAAGALWNLAANNDQNQVTIAEA 93
                677888888888888888888888777644..5667889********************9985 PP

>> PF03130.11  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.4   6.8e+02      17      25 ..      11      19 ..       5      21 .. 0.84
   2 ?    0.5   0.1      0.63   1.1e+03       4      13 ..      29      38 ..      26      61 .. 0.77
   3 ?    7.7   0.3    0.0029         5       5      26 ..      75     104 ..      71     105 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.4
                THHHHHHHC CS
  PF03130.11 17 aipaLleaL 25
                aip+L+++L
  MMETSP0890-20130614|2803_1 11 AIPPLVNLL 19
                9****9998 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.63
                SHHHHCCH-- CS
  PF03130.11  4 aAakaLgqlg 13
                +Aa aL +l 
  MMETSP0890-20130614|2803_1 29 NAAGALCNLA 38
                6888888875 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0029
                 HHHHCCH--S........HTTHHHHHHHCC CS
  PF03130.11   5 AakaLgqlgd........eeaipaLleaLq 26 
                 A++ L++ +d         +aipaL+ +L 
  MMETSP0890-20130614|2803_1  75 ALWNLAANNDqnqvtiaeADAIPALVDLLS 104
                 889999999999999999********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:00.95
# Mc/sec: 267.38
//
Query:       MMETSP0890-20130614|2805_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   16.8   0.2     0.0071   16.5   0.1    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0081   15.7   2.8      0.095   12.3   0.2    2.0  2  PF10960.3  Protein of unknown function (DUF2762)
  ------ inclusion threshold ------
      0.026   14.1   2.0        2.6    7.7   0.1    2.1  2  PF12460.3  NER and RNAPII transcription protein n terminal
      0.063   13.5   2.2          3    8.1   0.1    2.1  2  PF07730.8  Histidine kinase
      0.068   12.3   6.1        1.2    8.3   0.7    2.2  2  PF03791.8  KNOX2 domain
       0.08   12.3   1.5         17    4.9   0.0    3.2  4  PF08858.5  IDEAL domain
       0.11   12.8   1.2        4.5    7.5   0.1    2.3  2  PF04102.7  SlyX
       0.11   11.9   0.3        3.9    7.0   0.1    2.4  2  PF04060.8  Putative Fe-S cluster
        0.3   11.3   3.3        3.4    7.9   0.2    2.0  2  PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
       0.43   10.4   3.2       0.46   10.3   2.2    1.1  1  PF11068.3  Protein of unknown function (DUF2869)
        0.5   10.7   2.4         13    6.2   0.1    2.1  2  PF02597.15 ThiS family
       0.76    9.5   6.6       0.87    9.4   4.5    1.1  1  PF03938.9  Outer membrane protein (OmpH-like)
       0.87   10.7   5.2         24    6.2   0.4    3.1  2  PF10550.4  Conantokin-G mollusc-toxin
       0.91    8.2   5.9        1.1    8.0   4.1    1.0  1  PF04111.7  Autophagy protein Apg6
        3.1    7.1   5.4         13    5.1   0.4    2.0  2  PF13569.1  Domain of unknown function (DUF4132)
        3.7    7.9   6.2        5.5    7.4   0.6    2.3  2  PF01895.14 PhoU domain
        4.3    7.0   5.9        9.6    5.9   0.5    3.1  2  PF09457.5  FIP domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   8.9e-06    0.0071       4      55 ..       3      69 ..       1      81 [. 0.72

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.9e-06
   PF12796.2  4 AaengnlelvklLlekgadvdl....get...........pLhlAaeagnleivklLleagadvnak 55
                A ++++ e +klL e++ +++     +++            L  A+++ + e +k+L e++a++n+ 
  MMETSP0890-20130614|2805_1  3 ALQKKDEEYAKLLAECETELNQviaeKDNalatlefesrgSLESALQKKDEEYAKVLAEREAELNQV 69
                6778888888888888877777776644455556666666888888888888888888888888876 PP

>> PF10960.3  Protein of unknown function (DUF2762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.042        34      28      59 ..       6      37 ..       2      42 .. 0.70
   2 !   12.3   0.2   0.00012     0.095      27      59 ..      49      81 ..      43      85 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.042
   PF10960.3 28 kenekreekqe...eREskyqqiIeeitdkleive 59
                k+ e+     +   e E+ ++q+I e  + l+++e
  MMETSP0890-20130614|2805_1  6 KKDEEYA---KllaECETELNQVIAEKDNALATLE 37
                4444333...2555999999999999888887775 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00012
   PF10960.3 27 lkenekreekqeeREskyqqiIeeitdkleive 59
                +k+ e+  ++  eRE  ++q+I e  + l++++
  MMETSP0890-20130614|2805_1 49 QKKDEEYAKVLAEREAELNQVIAEKDESLAAFK 81
                466666666666*****************9997 PP

>> PF12460.3  NER and RNAPII transcription protein n terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0032       2.6      13      44 ..       4      35 ..       1      43 [. 0.83
   2 ?    6.5   0.2    0.0073       5.9      10      42 ..      45      77 ..      40      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0032
   PF12460.3 13 adssadqiaelvengkltLldlVesLGeyLts 44
                 +++ +++a+l+ + ++ L +++ ++ ++L +
  MMETSP0890-20130614|2805_1  4 LQKKDEEYAKLLAECETELNQVIAEKDNALAT 35
                5677789******************9999976 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0073
   PF12460.3 10 eekadssadqiaelvengkltLldlVesLGeyL 42
                e++ +++ +++a+ + +++  L +++ ++ e+L
  MMETSP0890-20130614|2805_1 45 ESALQKKDEEYAKVLAEREAELNQVIAEKDESL 77
                5677888899*****************999988 PP

>> PF07730.8  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0037         3      31      64 ..       4      37 ..       1      42 [. 0.88
   2 ?    5.8   0.2      0.02        16      27      64 ..      44      81 ..      40      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0037
   PF07730.8 31 lekdpekareeldeirellrealaevRrllgdLr 64
                l+k++e+ ++ l+e+++ l++++ae  + l++L 
  MMETSP0890-20130614|2805_1  4 LQKKDEEYAKLLAECETELNQVIAEKDNALATLE 37
                678999*******************999888875 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.02
   PF07730.8 27 akrllekdpekareeldeirellrealaevRrllgdLr 64
                ++  l+k++e+ ++ l+e ++ l++++ae  + l++++
  MMETSP0890-20130614|2805_1 44 LESALQKKDEEYAKVLAEREAELNQVIAEKDESLAAFK 81
                566789999*******************9888887765 PP

>> PF03791.8  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.7    0.0015       1.2      16      44 ..       9      37 ..       9      39 .. 0.93
   2 ?    6.7   0.2    0.0046       3.7      16      45 ..      53      82 ..      53      89 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0015
   PF03791.8 16 eaYcevLvkykeeLsrpfdEAmtflreie 44
                e Y ++L++ ++eL + + E +++l ++e
  MMETSP0890-20130614|2805_1  9 EEYAKLLAECETELNQVIAEKDNALATLE 37
                78***********************9998 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0046
   PF03791.8 16 eaYcevLvkykeeLsrpfdEAmtflreiet 45
                e Y +vL++ ++eL + + E ++ l  + +
  MMETSP0890-20130614|2805_1 53 EEYAKVLAEREAELNQVIAEKDESLAAFKC 82
                78***************9997777766655 PP

>> PF08858.5  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.021        17      21      28 ..       3      10 ..       2      11 .. 0.91
   2 ?    4.9   0.0     0.021        17      21      28 ..      47      54 ..      46      55 .. 0.91
   3 ?   -2.1   0.0       3.1   2.5e+03      12      21 ..      67      76 ..      59      79 .. 0.53
   4 ?   -1.3   0.0       1.8   1.5e+03       3      14 ..      74      85 ..      74      88 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.021
   PF08858.5 21 ALdtrDke 28
                AL+++D+e
  MMETSP0890-20130614|2805_1  3 ALQKKDEE 10
                9******9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.021
   PF08858.5 21 ALdtrDke 28
                AL+++D+e
  MMETSP0890-20130614|2805_1 47 ALQKKDEE 54
                9******9 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 3.1
   PF08858.5 12 ekLlelIDlA 21
                +++ ++ D++
  MMETSP0890-20130614|2805_1 67 NQVIAEKDES 76
                4444444555 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 1.8
   PF08858.5  3 eeslaefrkekL 14
                +esla f+ e L
  MMETSP0890-20130614|2805_1 74 DESLAAFKCESL 85
                688888886655 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0056       4.5      22      42 ..      21      41 ..      16      63 .. 0.79
   2 ?    4.2   0.0     0.062        50      22      37 ..      65      80 ..      61      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0056
   PF04102.7 22 eLNevvaeqqkeidrlqrqlr 42
                eLN+v+ae ++ ++ l+ + r
  MMETSP0890-20130614|2805_1 21 ELNQVIAEKDNALATLEFESR 41
                9*************9997766 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.062
   PF04102.7 22 eLNevvaeqqkeidrl 37
                eLN+v+ae ++ +++ 
  MMETSP0890-20130614|2805_1 65 ELNQVIAEKDESLAAF 80
                8*******99998865 PP

>> PF04060.8  Putative Fe-S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.11        92      16      30 ..       9      23 ..       9      24 .. 0.87
   2 ?    7.0   0.1    0.0048       3.9      16      31 ..      53      68 ..      53      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.11
   PF04060.8 16 mafAeallegeakid 30
                +++A+ l+e e +++
  MMETSP0890-20130614|2805_1  9 EEYAKLLAECETELN 23
                58*******999987 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0048
   PF04060.8 16 mafAeallegeakidd 31
                +++A+ l+e+ea++++
  MMETSP0890-20130614|2805_1 53 EEYAKVLAEREAELNQ 68
                58***********985 PP

>> PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.023        18      23      51 ..       3      31 ..       1      45 [. 0.75
   2 ?    7.9   0.2    0.0042       3.4      13      51 ..      36      75 ..      31      87 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.023
   PF12998.2 23 elreiDakvqkrlkelderiekfikengs 51
                 l+++D ++ k l e ++++++ i e+++
  MMETSP0890-20130614|2805_1  3 ALQKKDEEYAKLLAECETELNQVIAEKDN 31
                57888888888888888888888888766 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0042
   PF12998.2 13 LPlelqrnl.telreiDakvqkrlkelderiekfikengs 51
                L  e + +l + l+++D ++ k l e++ ++++ i e+++
  MMETSP0890-20130614|2805_1 36 LEFESRGSLeSALQKKDEEYAKVLAEREAELNQVIAEKDE 75
                5555555551469999***************999999876 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.2   0.00058      0.46      20      79 ..      17      76 ..       5      89 .] 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00058
   PF11068.3 20 elqeelqeqleqleqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkql 79
                e ++el++ + + ++ l+ Lef+++  l+++ +++ ++ +++  + e+e +++  +k++ 
  MMETSP0890-20130614|2805_1 17 ECETELNQVIAEKDNALATLEFESRGSLESALQKKDEEYAKVLAEREAELNQVIAEKDES 76
                678899999999999999999999988777666666777777777777777776655543 PP

>> PF02597.15  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.016        13      30      63 ..       3      33 ..       1      36 [. 0.85
   2 ?    5.0   0.3     0.036        29      26      64 ..      43      78 ..      30      81 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.016
                HHCCTTCHHHHTSSTCEEEETTEEEGTCTTTSB- CS
  PF02597.15 30 aLgerypelaelerrvavavNgeivprlwldtel 63
                aL+++++e+a+l + +  ++N+ i+++   d +l
  MMETSP0890-20130614|2805_1  3 ALQKKDEEYAKLLAECETELNQVIAEK---DNAL 33
                6889999999989*************9...6655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.036
                HHHHHHCCTTCHHHHTSSTCEEEETTEEEGTCTTTSB-- CS
  PF02597.15 26 elleaLgerypelaelerrvavavNgeivprlwldtelk 64
                 l  aL+++++e+a+  +   +++N+ i+++   d++l+
  MMETSP0890-20130614|2805_1 43 SLESALQKKDEEYAKVLAEREAELNQVIAEK---DESLA 78
                4455666677666776688888999999999...77775 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.5    0.0011      0.87      52     115 ..       4      71 ..       1      82 [. 0.56

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0011
   PF03938.9  52 lqakkkelqkeqknlqseraqlsaeaekakee.elq...akeqelqayaqqlqaelqaeqqevlqkli 115
                 lq+k +e+ k+ ++ ++e +q+ ae+ +a ++ e++   + e++lq++ +++ + l+++++e++q + 
  MMETSP0890-20130614|2805_1   4 LQKKDEEYAKLLAECETELNQVIAEKDNALATlEFEsrgSLESALQKKDEEYAKVLAEREAELNQVIA 71 
                 66666777777777777655444444444433355555556666666666666666666655555444 PP

>> PF10550.4  Conantokin-G mollusc-toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4      0.03        24       3      11 ..       9      17 ..       8      24 .. 0.92
   2 ?    5.7   0.3     0.045        36       3      11 ..      53      61 ..      52      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.03
                CCCCCHHHH CS
   PF10550.4  3 EElqkMaee 11
                EE++k ++e
  MMETSP0890-20130614|2805_1  9 EEYAKLLAE 17
                9****9998 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.045
                CCCCCHHHH CS
   PF10550.4  3 EElqkMaee 11
                EE++k ++e
  MMETSP0890-20130614|2805_1 53 EEYAKVLAE 61
                9****9998 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1    0.0013       1.1      59     121 ..       5      69 ..       2      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0013
                 XXX..XXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  59 nkeeenvealdseld.eLkkeeerlleeleeleke.edkldeeleelqeekekleeeeeqylrel 121
                 +k+ e++++l  e + eL++ + ++ + l  le e + +l+ +l++ +ee  k+ +e+e  l++ 
  MMETSP0890-20130614|2805_1   5 QKKDEEYAKLLAECEtELNQVIAEKDNALATLEFEsRGSLESALQKKDEEYAKVLAEREAELNQV 69 
                 344468999999986599999***********9762579**************999998877765 PP

>> PF13569.1  Domain of unknown function (DUF4132)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.016        13      11      42 ..       4      35 ..       2      43 .. 0.83
   2 ?    5.1   0.4     0.016        13       6      44 ..      43      81 ..      39      87 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.016
   PF13569.1 11 lkkddaeavkelkalkkdlkevaseqrarLee 42
                l+k+d+e++k l++++++l++v++e  + L +
  MMETSP0890-20130614|2805_1  4 LQKKDEEYAKLLAECETELNQVIAEKDNALAT 35
                566679******************99888876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.016
   PF13569.1  6 slPaklkkddaeavkelkalkkdlkevaseqrarLeeam 44
                sl  +l+k+d+e++k l++ + +l++v++e  ++L    
  MMETSP0890-20130614|2805_1 43 SLESALQKKDEEYAKVLAEREAELNQVIAEKDESLAAFK 81
                6777889999********************999997665 PP

>> PF01895.14  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4     0.071        57      18      47 ..       3      32 ..       1      47 [. 0.57
   2 ?    7.4   0.6    0.0068       5.5      17      40 ..      46      69 ..      41      87 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.071
                HHHTT-HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01895.14 18 alekkdtelarevierddeidrlekeieek 47
                al+kkd+e+a+ + e + e+++   e +++
  MMETSP0890-20130614|2805_1  3 ALQKKDEEYAKLLAECETELNQVIAEKDNA 32
                677777777776666666666654443333 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0068
                HHHHTT-HHHHHHHHHHHHHHHHH CS
  PF01895.14 17 dalekkdtelarevierddeidrl 40
                +al+kkd+e+a+ + er+ e+++ 
  MMETSP0890-20130614|2805_1 46 SALQKKDEEYAKVLAEREAELNQV 69
                689****9999999******9986 PP

>> PF09457.5  FIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3      0.14   1.1e+02       3      18 ..       9      24 ..       1      28 [. 0.71
   2 ?    5.9   0.5     0.012       9.6       1      18 [.      40      57 ..      40      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHHHHH CS
   PF09457.5  3 deLislllkqEeelsr 18
                +e  +ll+++E+el +
  MMETSP0890-20130614|2805_1  9 EEYAKLLAECETELNQ 24
                4555677777777765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.012
                THHHHHHHHHHHHHHHHH CS
   PF09457.5  1 srdeLislllkqEeelsr 18
                sr+ L+s+l+k+ ee ++
  MMETSP0890-20130614|2805_1 40 SRGSLESALQKKDEEYAK 57
                7899**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       817  (0.0597572); expected 273.4 (0.02)
Passed bias filter:                      557  (0.0407402); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.87
# Mc/sec: 245.14
//
Query:       MMETSP0890-20130614|2812_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.013   15.3   0.0    1.2  1  PF00651.26 BTB/POZ domain


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   9.5e-07     0.013      10      74 ..      22      84 ..       4      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.5e-07
                S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTTTTTT-SEEEEEETTS-HHHHHHHHHHHCCS CS
  PF00651.26 10 lcDvtlvvgdgkefkahkavLaarSpyFkalftggeieestvseieledvepevfealLefiYtg 74
                  D+++ + d+++++a   +Laa +p + al++ + i+ ++ + +   + + ++++ +L+f++ +
  MMETSP0890-20130614|2812_1 22 GHDIIISLPDNRRIYALGSILAAKAPALIALMNTE-ISPKEID-LSTCELSSSSIKGVLDFVHGA 84
                5799999999*************************.7877755.8889999999*****999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.86
# Mc/sec: 259.14
//
Query:       MMETSP0890-20130614|2814_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   14.4   0.1      0.011   14.3   0.1    1.2  1  PF05540.6 Serpulina hyodysenteriae variable surface protein


Domain annotation for each model (and alignments):
>> PF05540.6  Serpulina hyodysenteriae variable surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   8.3e-07     0.011     164     203 ..      47      87 ..      41     214 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.3e-07
   PF05540.6 164 diqiryytgidafn.eirlyikyGqagyknveknteeelfa 203
                 ++q+ yy gid++  +i  ++ky q+ y+++  n e ++  
  MMETSP0890-20130614|2814_1  47 NAQLAYYCGIDCLStRITTELKYAQNAYDKAMVNVERDFIM 87 
                 78*********9863799*************8888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 687.79
//
Query:       MMETSP0890-20130614|2811_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-67  227.5   0.0    3.1e-67  226.3   0.0    1.6  2  PF00069.20 Protein kinase domain
    6.3e-29  100.7   0.0    1.1e-28  100.0   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    1.5e-07   31.3   1.2    1.8e-06   27.8   0.0    3.1  3  PF13499.1  EF-hand domain pair
    4.3e-05   22.5   0.1    0.00013   20.9   0.1    1.8  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    8.3e-05   21.5   3.4      0.013   14.6   0.0    4.4  4  PF00036.27 EF hand
    0.00019   20.9   0.0      0.036   13.8   0.0    3.4  3  PF13405.1  EF-hand domain
     0.0021   17.7   2.6     0.0027   17.3   0.1    2.4  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.11   12.0   1.5        8.8    5.9   0.0    3.8  4  PF13833.1  EF-hand domain pair
       0.73    9.1   6.4          2    7.7   0.0    3.1  3  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0     2e-70   3.1e-67       3     260 .]     104     380 ..     102     380 .. 0.93
   2 ?   -3.5   0.1       2.7   4.1e+03     194     231 ..     608     645 ..     601     681 .. 0.54

  Alignments for each domain:
  == domain 1    score: 226.3 bits;  conditional E-value: 2e-70
                 EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E......EE------EEECEESS-CSS----GGGS-HHHHH....TSHHHHHHHHHHHHHHHHHHHHC---TTTST...........HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel......kiaDFGlakkleksseklttlvgtreYmAPEvll....kakeytkkvDvWslGvilyelltgklpfsge...........seedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++ ++G+G fG+V++++++ +g+ +A+K+l+k + ++    t  rE+ i+++l+H +i+++ +v+e+ ++ ++++e+++ggdl+++l+ + g+lse   + i +q l++l+ +Hs+gi+HrDLKpeNiLl kk e+      k++DFGl++  +  +++l+ +vgt++YmAPEvl+    ++ +yt+++D+Ws+Gvi+y ll+g++pfs++           ++++ +++ ++i+ ++ + d  ++ + s+e+++l++ ll+ d++ R+ta+e+l+h ++
  MMETSP0890-20130614|2811_1 104 FHAEIGAGHFGRVFECMRRVDGRLYACKQLEKGKIRDPR--TVCREVTIMRRLKHAHILEIQDVYETVNNAWIITELCDGGDLMHHLMrRGGTLSEAATRVIGQQFLSALDACHSMGIVHRDLKPENILLLKKPETdhdvhlKVIDFGLSCI-YDGETELHRVVGTPYYMAPEVLRaldpGQGGYTSACDLWSCGVIFYLLLCGRPPFSSDdefvegitrkrKRTSIQQIKQRIMAGDFPLDFGSWLRCSTEACELVCGLLRVDARLRMTAKEALNHVFI 380
                 6789****************************9999966..5789***************************************9999789999*************************************99999999999********97.9999*******************99999****************************99899999977766666666667777777777777888888***************************875 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.7
                 C---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHH CS
  PF00069.20 194 tgklpfsgeseedqleliekilkkkleedepkssskse 231
                 +++++++++++ +++  i++++k+++  +++ s ++se
  MMETSP0890-20130614|2811_1 608 SKSVLWHNNNSLRKSMSIDEDQKEEVVDHRQVSATESE 645
                 55555555555555555555555544444444433332 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0     7e-32   1.1e-28       3     224 ..     104     324 ..     102     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 7e-32
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET......TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.....EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee......ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.....ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrl 224
                 ++ ++G+G+fG+V+e++ +     +    a K+l++++ ++  + +++e+ im++lkh +i+++  v+ + ++ +i+te+++gGdL + L ++   +l+ + +  + +q  ++++  +s+ +vHrdL   N+Ll +      + + k+ DfGL+      d  ++ ++      +mapE+l++       +ts+ D Ws Gv+ + +++ g+ p++  s+ e++e ++++++ 
  MMETSP0890-20130614|2811_1 104 FHAEIGAGHFGRVFECMRR----VDGRLYACKQLEKGKIRD-PRTVCREVTIMRRLKHAHILEIQDVYETVNNAWIITELCDGGDLMHHLMRR-GGTLSEAATRVIGQQFLSALDACHSMGIVHRDLKPENILLLKkpetdhDVHLKVIDFGLSCIY---DGETELHRVVGTPYYMAPEVLRALDpgqggYTSACDLWSCGVIFYLLLC-GRPPFS--SDDEFVEGITRKRKR 324
                 7789*************99....778889*****7777666.89*************************9**********************9.***************************************987788876779*********988...333444555666789*******99999999*************998888.888885..456666666444443 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.2e-09   1.8e-06       2      63 ..     430     487 ..     428     489 .. 0.95
   2 ?   -3.2   0.0       5.6   8.5e+03      56      65 ..     548     557 ..     534     558 .. 0.78
   3 ?    0.2   0.1      0.51   7.8e+02      41      56 ..     757     772 ..     732     782 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.2e-09
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                 l+++F++lD d+dg ++ +++  +lk+      + +++ ++++if+   +  + ++s++Ef+
  MMETSP0890-20130614|2811_1 430 LRTEFESLDHDNDGLISIQDICTALKRRE----HANSQIQVEAIFEACQLPCNHLVSYDEFV 487
                 789************************99....999999**********************7 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 5.6
   PF13499.1  56 vlsfeEflqa 65 
                 +++++Ef+++
  MMETSP0890-20130614|2811_1 548 KIDRDEFEAL 557
                 5778888765 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.51
   PF13499.1  41 vldyifkelDkngdGv 56 
                  ld+i++e+D + d +
  MMETSP0890-20130614|2811_1 757 DLDRILREADRDDDKR 772
                 5666777777776654 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   8.5e-08   0.00013      57     165 ..     143     248 ..     130     252 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.5e-08
   PF06293.9  57 rsvrEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeee...ekakvwliDl 165
                 +  rE+  ++rL+ a +  ++ v+  ++       A ++te  +g   +  +++++ +l+e+ +r + ++  ++  + h+ g+ H+dl + nill ++     + ++ +iD+
  MMETSP0890-20130614|2811_1 143 TVCREVTIMRRLKHAHILEIQDVYETVN------NAWIITELCDGGDLMHHLMRRGGTLSEAATRVIGQQFLSALDACHSMGIVHRDLKPENILLLKKPetdHDVHLKVIDF 248
                 678999*********9999999998888......9******99998666666777666888888888888888999*****************9866655778899999999 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.8e-06     0.013       3      28 ..     431     456 ..     429     457 .. 0.89
   2 ?   -0.5   0.0      0.56   8.4e+02      13      24 ..     477     488 ..     465     490 .. 0.70
   3 ?    2.0   0.0     0.092   1.4e+02      16      27 ..     548     559 ..     547     560 .. 0.90
   4 ?    0.7   0.8      0.25   3.7e+02       1      14 [.     757     770 ..     757     773 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.8e-06
                 HHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                 +  F+ +D D+dG Is ++ ++alk+
  MMETSP0890-20130614|2811_1 431 RTEFESLDHDNDGLISIQDICTALKR 456
                 56699******************986 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.56
                 TSSEBEHHHHHH CS
  PF00036.27  13 gdGkIsfeEfke 24 
                  +  +s++Ef+ 
  MMETSP0890-20130614|2811_1 477 CNHLVSYDEFVV 488
                 56679*****85 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.092
                 EBEHHHHHHHHH CS
  PF00036.27  16 kIsfeEfkealk 27 
                 kI+ +Ef ++l+
  MMETSP0890-20130614|2811_1 548 KIDRDEFEALLR 559
                 8*******9997 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHCTTTS CS
  PF00036.27   1 elkeaFkefDkDgd 14 
                 +l+++ +e+D+D d
  MMETSP0890-20130614|2811_1 757 DLDRILREADRDDD 770
                 589*********88 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.4e-05     0.036       3      28 ..     431     456 ..     429     462 .. 0.88
   2 ?   -2.2   0.0       3.2   4.9e+03       2      23 ..     502     525 ..     501     527 .. 0.67
   3 ?    2.7   0.0     0.089   1.4e+02      16      29 ..     548     562 ..     547     568 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-05
                 H---GCC-------B---HHHHHHH. CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLrk 28 
                 r  F+ +D+d+dG i+++++  aL++
  MMETSP0890-20130614|2811_1 431 RTEFESLDHDNDGLISIQDICTALKR 456
                 6669********************96 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.2
                 HH---GCC.---.----B---HHH CS
   PF13405.1   2 lreaFklf.Dkd.gdGkidaeELr 23 
                 + ++Fk++ D + g  +++a+ Lr
  MMETSP0890-20130614|2811_1 502 VDKLFKQYlDATpGEPYVTADSLR 525
                 568999997866344477777776 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.089
                 -B---HHHHHHH..H CS
   PF13405.1  16 kidaeELrdaLrk.s 29 
                 kid++E+ ++Lr+ +
  MMETSP0890-20130614|2811_1 548 KIDRDEFEALLRRpD 562
                 7**********9764 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-06    0.0027     154     208 ..     205     264 ..     103     286 .. 0.68
   2 ?   -1.9   0.2       1.3     2e+03      97     132 ..     743     785 ..     720     815 .. 0.50

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHCSS--EEB-SS-SGGGEEEE.....TTTTEE.EE---TT-BBE-TCHHHHCCC CS
  PF01636.18 154 aalaallpgaeppvllHgDlhpgNllvd.....pddgrv.gviDfedaglgpplyDlasll 208
                 ++++++l++  + +++H+Dl+p N+l+      ++d     viDf+++++ + + +l +++
  MMETSP0890-20130614|2811_1 205 QQFLSALDACHSMGIVHRDLKPENILLLkkpetDHDV-HlKVIDFGLSCIYDGETELHRVV 264
                 44444444456799****************9844444.359*******9988777776665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHS--T.......TSHGGHCTBCTHHHHHHHHHH CS
  PF01636.18  97 alaellaalhqadpa.......adpladflapyltllrllesa 132
                 ++a++l++l +++ +       ad+ +d +   ++ l l+ +a
  MMETSP0890-20130614|2811_1 743 RAAAALKQLKEFEIDldrilreADRDDDKRMAEAKYLDLVLNA 785
                 4455555554443331111111344444443333333333333 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0058       8.8      28      54 .]     431     457 ..     426     457 .. 0.89
   2 ?    1.1   0.0      0.18   2.7e+02      41      53 ..     480     492 ..     465     493 .. 0.83
   3 ?   -3.1   0.0       3.6   5.5e+03       5      11 ..     549     555 ..     548     561 .. 0.51
   4 ?    0.7   0.1      0.24   3.6e+02      26      39 ..     757     770 ..     742     771 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0058
   PF13833.1  28 dilfrefDtdgdGkisfeEFcvllerl 54 
                 ++ f  +D d+dG is  + c++l+r+
  MMETSP0890-20130614|2811_1 431 RTEFESLDHDNDGLISIQDICTALKRR 457
                 6778889***************99986 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.18
   PF13833.1  41 kisfeEFcvller 53 
                  +s++EF+v+ ++
  MMETSP0890-20130614|2811_1 480 LVSYDEFVVASVH 492
                 59******98776 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.6
   PF13833.1   5 ItreeLk 11 
                 I+r+e+ 
  MMETSP0890-20130614|2811_1 549 IDRDEFE 555
                 5555553 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.24
   PF13833.1  26 evdilfrefDtdgd 39 
                 ++d ++re+D+d+d
  MMETSP0890-20130614|2811_1 757 DLDRILREADRDDD 770
                 4799********98 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0013         2       5      20 ..     434     449 ..     430     454 .. 0.88
   2 ?    3.8   0.1     0.023        34      15      25 .]     548     558 ..     548     558 .. 0.90
   3 ?   -2.4   0.5       2.1   3.2e+03       3      13 ..     760     770 ..     758     770 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0013
                 HHHH--S----B-HHH CS
   PF13202.1   5 FrafDlNgDGkIsreE 20 
                 F+ +D ++DG Is+++
  MMETSP0890-20130614|2811_1 434 FESLDHDNDGLISIQD 449
                 999**********986 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.023
                 -B-HHHHHHHH CS
   PF13202.1  15 kIsreELkrlv 25 
                 kI+r+E+++l+
  MMETSP0890-20130614|2811_1 548 KIDRDEFEALL 558
                 8******9975 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.1
                 HHHHHH--S-- CS
   PF13202.1   3 dtFrafDlNgD 13 
                  ++r++D + D
  MMETSP0890-20130614|2811_1 760 RILREADRDDD 770
                 57899****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:01.41
# Mc/sec: 1509.20
//
Query:       MMETSP0890-20130614|2833_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
       0.01   15.5   0.4        3.7    7.3   0.1    2.3  2  PF08700.6 Vps51/Vps67


Domain annotation for each model (and alignments):
>> PF08700.6  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00047       6.5      45      61 ..      21      37 ..       4      44 .. 0.90
   2 !    7.3   0.1   0.00027       3.7      55      83 ..      61      89 ..      59      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00047
   PF08700.6 45 lVydnYskLisasdtIr 61
                 V++nYs++ +  dtI+
  MMETSP0890-20130614|2833_1 21 AVGTNYSEFCDFLDTIK 37
                69************997 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00027
   PF08700.6 55 sasdtIrkmksemekldpklselkqaiek 83
                +as+ I+++k+++++ +++++el++a ++
  MMETSP0890-20130614|2833_1 61 EASKPISSLKKSLNNSASNIEELSSASSQ 89
                69999*******************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 335.49
//
Query:       MMETSP0890-20130614|2832_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-12   45.1   0.0      1e-09   38.1   0.0    3.0  1  PF01661.16 Macro domain
     0.0043   16.5   0.1     0.0071   15.8   0.0    1.3  1  PF13376.1  Bacteriocin-protection, YdeI or OmpD-Associated


Domain annotation for each model (and alignments):
>> PF01661.16  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.5e-13     1e-09      11     112 ..      47     188 ..      38     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.5e-13
                 -S--HHHHHHHH--HHHHHHHHHHHHHHH.....................--TT-EEEEE-GGCSSSEEEEEE-------...................--CCHHHHHHHHHHHHHHHHHHTT-SEEEEE-TT-------HH CS
  PF01661.16  11 ggGvagaihraagkalkeeckelekkqgg.....................illGeavvtpaynlpakyvihavgplftss...................kskeeeellasayknalelaeekgiksvafPaistGifgvpwe 112
                  + v+gai   ag++l ++c e e+   g                     ++ G++vvt ay l+a y++hav+p+ +                     +s    +ll+s+y+++ +  e+ ++  +a+P+++tG+ ++   
  MMETSP0890-20130614|2832_1  47 RKSVDGAIRNVAGPDLVRACLEFEQLSDGqrrnitrwtqtakrgasavqrCAPGDTVVTRAYGLDADYIVHAVAPDSEFMyqghyqgepgergegairlESSPPLDLLRSCYDQCWQRTEQLEAPCIALPSLGTGVKAWRPA 188
                 67899999999999999999888776544567999999999999999999*************************988778889999**99999999888888899******************************988765 PP

>> PF13376.1  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     1e-06    0.0071      24      45 ..      69      90 ..      68      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1e-06
   PF13376.1 24 FealtpsyrkailrwiqsaKrp 45
                Fe+l++++r++i+rw q+aKr 
  MMETSP0890-20130614|2832_1 69 FEQLSDGQRRNITRWTQTAKRG 90
                9*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.84
# Mc/sec: 801.64
//
Query:       MMETSP0890-20130614|2869_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   50.7   0.0    1.3e-13   50.6   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    0.00014   21.4   0.0    0.00018   21.1   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.9e-17   1.3e-13      26      72 ..       2      48 ..       1      49 [] 0.56

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1.9e-17
   PF13306.1 26 IgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsi 72
                Ig++aF++c++l++++lp+ lteige+aF++c+ lt++t+p  lt i
  MMETSP0890-20130614|2869_1  2 IGNEAFRGCTNLTQVSLPEGLTEIGEWAFEGCTGLTQLTLPVGLTMI 48
                56666666666666666666666666666666666666666555555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.6e-08   0.00018      16      56 ..       2      41 ..       1      42 [. 0.96

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.6e-08
   PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                i+++aF g++nL+  +L    l++i + af+g++ L++L L
  MMETSP0890-20130614|2869_1  2 IGNEAFRGCTNLTQVSLP-EGLTEIGEWAFEGCTGLTQLTL 41
                899***************.********9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:01.18
# Mc/sec: 99.51
//
Query:       MMETSP0890-20130614|2867_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   12.6   0.2      0.089   11.9   0.2    1.5  1  PF04473.7 Transglutaminase-like domain


Domain annotation for each model (and alignments):
>> PF04473.7  Transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.5e-06     0.089      57      96 ..      55      94 ..      12     103 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.5e-06
   PF04473.7 57 dlkslkliqtpkeilktkkgiCsDYAiLtsalLlklnvsk 96
                +lk+++ i   + + ++k+  C DYA+  ++ L + n++ 
  MMETSP0890-20130614|2867_1 55 TLKNVQGIDNKRAFFMRKSLLCLDYALTQATALTQANIDA 94
                5678888889999*********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 626.99
//
Query:       MMETSP0890-20130614|2872_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-28   96.1   0.0    1.7e-15   56.5   0.0    2.0  2  PF13424.1  Tetratricopeptide repeat
    1.2e-21   75.7   3.2    7.1e-14   51.0   0.1    2.9  3  PF13374.1  Tetratricopeptide repeat
    2.5e-13   49.3   0.1    6.1e-08   32.0   0.0    1.7  2  PF13414.1  TPR repeat
    9.2e-09   34.4   2.8    3.9e-06   26.1   0.0    2.4  3  PF00515.23 Tetratricopeptide repeat
    3.4e-08   32.6   0.9    3.9e-05   23.1   0.1    2.3  2  PF07719.12 Tetratricopeptide repeat
    1.2e-07   30.8   0.0    9.1e-05   21.8   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
      8e-05   22.8   0.1     0.0043   17.4   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00018   21.9   0.1    0.00038   20.9   0.0    1.5  1  PF13432.1  Tetratricopeptide repeat
     0.0029   17.5   1.0      0.054   13.6   0.1    2.9  2  PF13431.1  Tetratricopeptide repeat
     0.0068   15.9   0.3       0.29   10.9   0.0    2.2  2  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.014   15.3   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.049   13.5   0.0      0.073   12.9   0.0    1.4  1  PF12688.2  Tetratrico peptide repeat
      0.074   11.8   0.0      0.082   11.7   0.0    1.1  1  PF04910.9  Transcriptional repressor TCF25
      0.084   12.0   0.0       0.15   11.2   0.0    1.4  1  PF10516.4  SHNi-TPR


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   1.7e-18   1.7e-15      21      78 .]       2      60 ..       1      60 [. 0.98
   2 !   43.0   0.0   2.9e-14   2.8e-11       8      52 ..      31      76 .]      31      76 .] 0.98

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 1.7e-18
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                ydeA  lye+a+ +  ++lg++hp +a+ lnnla l++ +g++ eA +++++Al+i+e+
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVIsEKKLGPNHPHVATGLNNLAALLRNQGKFGEAMPLFQRALNIREE 60
                9*******************************************************985 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 2.9e-14
   PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnl 52
                lnnla +lr +g++ eA  l+++al++  ++lg++hp++a +lnnl
  MMETSP0890-20130614|2872_1 31 LNNLAALLRNQGKFGEAMPLFQRALNIrEEKLGPNHPQVAESLNNL 76
                79*************************9999**************8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.5e-08   6.3e-05      18      42 .]       2      26 ..       1      26 [. 0.96
   2 !   51.0   0.1   7.3e-17   7.1e-14       1      42 []      27      68 ..      27      68 .. 0.97
   3 ?    2.0   0.1      0.19   1.9e+02       1       8 [.      69      76 .]      69      76 .] 0.93

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6.5e-08
   PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
                y+eA +l+e+a  i ++ lG++HP+
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVISEKKLGPNHPH 26
                9***********************6 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 7.3e-17
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +lr++g+++eA +l+++al ir++ lG++HP+
  MMETSP0890-20130614|2872_1 27 VATGLNNLAALLRNQGKFGEAMPLFQRALNIREEKLGPNHPQ 68
                6888*************************************5 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.19
   PF13374.1  1 taaalnnL 8 
                +a +lnnL
  MMETSP0890-20130614|2872_1 69 VAESLNNL 76
                799****9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   6.2e-11   6.1e-08      19      68 ..       2      58 ..       1      59 [. 0.84
   2 !   20.8   0.0   2.1e-07    0.0002       4      38 ..      29      68 ..      26      76 .] 0.73

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 6.2e-11
   PF13414.1 19 ydeAieayekAl.....eldpnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                ydeA  +ye+A+     +l pn++     ++nlA++++++g ++ eA+  +++Al+++
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIvisekKLGPNHPHvatGLNNLAALLRNQG-KFGEAMPLFQRALNIR 58
                9***********4444445588755556*************.6************986 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 2.1e-07
   PF13414.1  4 ealkelGnalfkegdydeAieayekAleld.....pnnae 38
                  l++l+  l ++g++ eA  ++++Al ++     pn+++
  MMETSP0890-20130614|2872_1 29 TGLNNLAALLRNQGKFGEAMPLFQRALNIReeklgPNHPQ 68
                5589999999999999999999999998755555577766 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1     0.001         1      17      31 ..       2      16 ..       1      19 [. 0.89
   2 !   26.1   0.0     4e-09   3.9e-06       2      32 ..      29      59 ..      28      61 .. 0.91
   3 ?   -2.9   0.0       5.7   5.6e+03       1       7 [.      70      76 .]      70      76 .] 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.001
                HHHHHHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekALeln 31
                ydeA   ye+A+ + 
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVIS 16
                9**********9875 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 4e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                  l+nl+++++++gk+ eA   +++AL +++
  MMETSP0890-20130614|2872_1 29 TGLNNLAALLRNQGKFGEAMPLFQRALNIRE 59
                579************************8875 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 5.7
                HHHHHHH CS
  PF00515.23  1 akalynl 7 
                a++l+nl
  MMETSP0890-20130614|2872_1 70 AESLNNL 76
                7889997 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0018       1.8      17      31 ..       2      16 ..       1      19 [. 0.88
   2 !   23.1   0.1     4e-08   3.9e-05       2      31 ..      29      58 ..      28      61 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHH- CS
  PF07719.12 17 yeeAleafekAleld 31
                y+eA+ ++e+A+ + 
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVIS 16
                9**********9775 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                 +l+nl+ +++++g++ eA  +f++Al + 
  MMETSP0890-20130614|2872_1 29 TGLNNLAALLRNQGKFGEAMPLFQRALNIR 58
                689************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0044       4.3      15      31 ..       2      18 ..       1      23 [. 0.77
   2 !   21.8   0.0   9.3e-08   9.1e-05       2      34 ..      31      63 ..      30      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0044
   PF13176.1 15 yekAielyeraLaltkd 31
                y++A  lyera+++ + 
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVISEK 18
                9*********7766554 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 9.3e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                l+nLa l +++g++ +A  l++raL ++++ l+
  MMETSP0890-20130614|2872_1 31 LNNLAALLRNQGKFGEAMPLFQRALNIREEKLG 63
                89*********************9999988776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.081        79      17      29 ..       2      14 ..       1      31 [. 0.68
   2 !   17.4   0.0   4.4e-06    0.0043       4      37 ..      31      69 ..      27      74 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.081
   PF13428.1 17 pdeAiallrrala 29
                +deA  l++ra+ 
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIV 14
                79*********85 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.4e-06
   PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaea 37
                l  la++l+++G + eA+ l++ral      l+P+++++
  MMETSP0890-20130614|2872_1 31 LNNLAALLRNQGKFGEAMPLFQRALNireekLGPNHPQV 69
                5679********************853334366777665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.9e-07   0.00038      13      65 .]       2      67 ..       1      67 [. 0.90

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.9e-07
   PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaPddp 65
                ydeA +++e+a+           P+ a  l +la +l  +g++ eA  l+++al     +l+P++p
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVISekklgpnhPHVATGLNNLAALLRNQGKFGEAMPLFQRALnireeKLGPNHP 67
                99******66666666****99999*****************************999999999886 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   5.5e-05     0.054       2      32 ..       9      47 ..       8      48 .. 0.75
   2 ?    1.4   0.1      0.44   4.3e+02      10      19 ..      64      76 .]      50      76 .] 0.50

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.5e-05
   PF13431.1  2 yekaleld.....Pnn...adaynnLAelllnnGdleeA 32
                ye+a+ ++     Pn+   a  +nnLA ll n+G++ eA
  MMETSP0890-20130614|2872_1  9 YERAIVISekklgPNHphvATGLNNLAALLRNQGKFGEA 47
                777777764444444466699999***********9988 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.44
   PF13431.1 10 Pnn...adaynnL 19
                Pn+   a+++nnL
  MMETSP0890-20130614|2872_1 64 PNHpqvAESLNNL 76
                4443336666665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.072        70      17      28 ..       2      13 ..       1      19 [. 0.89
   2 !   10.9   0.0   0.00029      0.29       3      31 ..      30      58 ..      28      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.072
                HHHHHHHHH--- CS
   PF13181.1 17 ydkAkeylekal 28
                yd+Ak  +e+a+
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAI 13
                9********998 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00029
                -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelk 31
                 ++nl+ ++r+ G++ +A+  +++al + 
  MMETSP0890-20130614|2872_1 30 GLNNLAALLRNQGKFGEAMPLFQRALNIR 58
                589**********************9875 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.4e-05     0.014       5      58 ..       2      67 ..       1      74 [. 0.69

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-05
                HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBH CS
   PF12895.2  5 yknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk......leldsssl 58
                y++A  l+e+++  s k      p  ++ l +lA  l ++g++ +A+ l+++      ++l ++++
  MMETSP0890-20130614|2872_1  2 YDEAKPLYERAIVISEKklgpnHPhVATGLNNLAALLRNQGKFGEAMPLFQRalnireEKLGPNHP 67
                666666666666666655544223455566678*****************9996666555555555 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.5e-05     0.073      18      70 ..       3      59 ..       1      74 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.5e-05
   PF12688.2 18 akAvplYrrAl...aa..GLagarrrratiqlaSsLRnlGrveeslalleaelaeapg 70
                ++A plY+rA+   ++  G +  +       la+ LRn G+  e++ l++++l+  ++
  MMETSP0890-20130614|2872_1  3 DEAKPLYERAIvisEKklGPNHPHVATGLNNLAALLRNQGKFGEAMPLFQRALNI-RE 59
                78999***996443331144555555666789******************99984.44 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.4e-05     0.082      35      84 ..      23      72 ..      19      76 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.4e-05
   PF04910.9 35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFspllln 84
                ++P    +L +l+ ++r+qg+f +A+ l +raL i e+ + p+  ++ ++
  MMETSP0890-20130614|2872_1 23 NHPHVATGLNNLAALLRNQGKFGEAMPLFQRALNIREEKLGPNHPQVAES 72
                57877889**************************9999998887665555 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.15      14      35 ..      41      62 ..      38      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
   PF10516.4 14 nEnFpqAveDlrkaLeLreqll 35
                +++F +A   +++aL++re+ l
  MMETSP0890-20130614|2872_1 41 QGKFGEAMPLFQRALNIREEKL 62
                579999*************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 246.11
//
Query:       MMETSP0890-20130614|2871_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 597.61
//
Query:       MMETSP0890-20130614|2877_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   12.0   0.0       0.14   11.4   0.0    1.2  1  PF11828.3 Protein of unknown function (DUF3348)


Domain annotation for each model (and alignments):
>> PF11828.3  Protein of unknown function (DUF3348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.9e-06      0.14     108     178 ..     286     355 ..     264     360 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.9e-06
   PF11828.3 108 paeaaadfapfrqrylalQqemeaaigqLRgrlrkalaaqspelarLAelDavmeraLaarersllaavPa 178
                 ++  ++ +++ +++++++Q+++ ++i+ L ++l  +  + + ++ r+  +   +e+aL+  e s+l+a Pa
  MMETSP0890-20130614|2877_1 286 QPLSEPVISTIQNMCSLVQKQI-TTITALEKKLEVTNVGLTHAISRVDSVSQKLEQALTSFESSMLSAAPA 355
                 44566778899999*******8.5799*****************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.82
# Mc/sec: 1379.37
//
Query:       MMETSP0890-20130614|2890_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   12.4   1.1       0.11   12.1   0.3    1.5  2  PF10960.3 Protein of unknown function (DUF2762)
       0.26   10.4   1.5       0.59    9.3   0.2    1.8  2  PF03791.8 KNOX2 domain


Domain annotation for each model (and alignments):
>> PF10960.3  Protein of unknown function (DUF2762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.29     2e+03      46      59 ..       3      16 ..       2      24 .. 0.70
   2 ?   12.1   0.3   1.6e-05      0.11      27      59 ..      26      58 ..      17      60 .] 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.29
   PF10960.3 46 qiIeeitdkleive 59
                qiI e  + l+++e
  MMETSP0890-20130614|2890_1  3 QIIAEKDNALATFE 16
                66776666666665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.6e-05
   PF10960.3 27 lkenekreekqeeREskyqqiIeeitdkleive 59
                +k+ e+  ++  eRE  ++q+I e  + l++++
  MMETSP0890-20130614|2890_1 26 QKKDEEYAKVLAEREAELNQVIAEKDNALAAFK 58
                566666666666************999999886 PP

>> PF03791.8  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.059   4.1e+02      31      46 ..       3      18 ..       1      23 [. 0.83
   2 ?    9.3   0.2   8.6e-05      0.59      16      44 ..      30      58 ..      30      60 .] 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.059
   PF03791.8 31 rpfdEAmtflreietq 46
                +++ E +++l ++e q
  MMETSP0890-20130614|2890_1  3 QIIAEKDNALATFELQ 18
                6777889999999988 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 8.6e-05
   PF03791.8 16 eaYcevLvkykeeLsrpfdEAmtflreie 44
                e Y +vL++ ++eL + + E +++l  + 
  MMETSP0890-20130614|2890_1 30 EEYAKVLAEREAELNQVIAEKDNALAAFK 58
                78******************999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       868  (0.0634874); expected 273.4 (0.02)
Passed bias filter:                      698  (0.0510532); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.92
# Mc/sec: 156.28
//
Query:       MMETSP0890-20130614|2887_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-47  156.7   0.0      4e-18   64.5   0.0    3.1  3  PF13475.1  Domain of unknown function (DUF4116)
    3.2e-07   29.8   0.0       0.66    9.5   0.0    4.0  4  PF07892.6  Protein of unknown function (DUF1667)
  ------ inclusion threshold ------
      0.015   15.3   0.1         10    6.2   0.0    3.6  4  PF09575.5  Small spore protein J (Spore_SspJ)
      0.017   14.8   0.2         17    5.1   0.0    2.8  3  PF08864.5  UPF0302 domain
      0.025   13.7   0.6        6.3    5.8   0.0    3.6  5  PF11641.3  Glycosylphosphatidylinositol-anchored merozoite surface protein
      0.039   13.7   0.0        4.1    7.1   0.0    2.8  3  PF08678.5  Rsbr N terminal
      0.054   12.5   0.2        2.9    6.9   0.0    2.1  3  PF14100.1  Methane oxygenase PmoA
      0.086   12.9   0.3         17    5.5   0.0    2.8  3  PF01890.11 Cobalamin synthesis G C-terminus
        0.1   12.4   0.2         28    4.5   0.0    3.4  4  PF12310.3  Transcription factor protein N terminal


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   3.2e-13   4.9e-10      17      49 .]       1      33 [.       1      33 [. 0.97
   2 !   64.5   0.0   2.6e-21     4e-18       1      49 []      35      83 ..      35      83 .. 0.99
   3 !   50.5   0.0   5.9e-17   8.9e-14       1      43 [.      85     127 ..      85     129 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 3.2e-13
   PF13475.1 17 kylseeLknDkeivlkAvkqngsalsyaseeLr 49
                +y++ee+knD+eivl Avk+ng al +as e++
  MMETSP0890-20130614|2887_1  1 EYANEEFKNDREIVLIAVKRNGGALTFASSEIK 33
                69***************************9997 PP

  == domain 2    score: 64.5 bits;  conditional E-value: 2.6e-21
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrEivl av++ng+al+++  eLknD+eivl+Av qng  l++as eL+
  MMETSP0890-20130614|2887_1 35 DREIVLTAVTQNGFALRFARQELKNDREIVLAAVTQNGWTLKFASQELK 83
                9**********************************************97 PP

  == domain 3    score: 50.5 bits;  conditional E-value: 5.9e-17
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsy 43 
                 DrE++l+av++ng al+++s eLknD+eivl+Av q+ + + +
  MMETSP0890-20130614|2887_1  85 DREVALAAVSQNGRALEFASQELKNDREIVLAAVTQDDHEFAF 127
                 9***********************************9887766 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00044      0.66       5      33 ..       1      29 [.       1      45 [. 0.85
   2 ?    3.6   0.0     0.032        49       5      26 ..      26      47 ..      23      51 .. 0.86
   3 !    6.3   0.0    0.0044       6.7       5      33 ..      51      79 ..      48      95 .. 0.85
   4 !    8.6   0.0   0.00087       1.3       2      32 ..      98     128 ..      97     132 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00044
   PF07892.6  5 eYakkeltnpkriltstVkveggelplvp 33
                eYa++e++n + i+   Vk +gg l + +
  MMETSP0890-20130614|2887_1  1 EYANEEFKNDREIVLIAVKRNGGALTFAS 29
                7**********************988776 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.032
   PF07892.6  5 eYakkeltnpkriltstVkveg 26
                ++a +e+++ + i+ + V  +g
  MMETSP0890-20130614|2887_1 26 TFASSEIKDDREIVLTAVTQNG 47
                79**************998665 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0044
   PF07892.6  5 eYakkeltnpkriltstVkveggelplvp 33
                 +a++el+n + i+ + V  +g +l++ +
  MMETSP0890-20130614|2887_1 51 RFARQELKNDREIVLAAVTQNGWTLKFAS 79
                79****************99988877765 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00087
   PF07892.6   2 rGeeYakkeltnpkriltstVkveggelplv 32 
                 r  e+a +el+n + i+ + V  ++ e++++
  MMETSP0890-20130614|2887_1  98 RALEFASQELKNDREIVLAAVTQDDHEFAFL 128
                 789******************9999888776 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.35   5.3e+02      21      33 ..      23      35 ..      18      37 .. 0.89
   2 ?   -1.4   0.0       1.7   2.5e+03      23      33 ..      50      60 ..      47      62 .. 0.77
   3 ?    2.9   0.0     0.075   1.1e+02      24      33 ..      76      85 ..      68      86 .. 0.87
   4 ?    6.2   0.0    0.0068        10      21      33 ..      98     110 ..      92     112 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.35
   PF09575.5 21 gaLEdAgkaLkgD 33
                gaL  A+ ++k+D
  MMETSP0890-20130614|2887_1 23 GALTFASSEIKDD 35
                79999*******9 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.7
   PF09575.5 23 LEdAgkaLkgD 33
                L  A ++Lk+D
  MMETSP0890-20130614|2887_1 50 LRFARQELKND 60
                55588999988 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.075
   PF09575.5 24 EdAgkaLkgD 33
                  A+++Lk+D
  MMETSP0890-20130614|2887_1 76 KFASQELKDD 85
                569******9 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0068
   PF09575.5  21 gaLEdAgkaLkgD 33 
                  aLE A+++Lk+D
  MMETSP0890-20130614|2887_1  98 RALEFASQELKND 110
                 59*********99 PP

>> PF08864.5  UPF0302 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.011        17      38      68 ..      26      56 ..      23      60 .. 0.90
   2 ?    4.8   0.0     0.014        22      38      68 ..      51      81 ..      49      99 .. 0.89
   3 ?    4.9   0.0     0.013        20      37      64 ..     100     127 ..      95     130 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.011
   PF08864.5 38 hFvenaekkpraleisakgseeepfafykgn 68
                 F ++++k +r ++++a+  ++ +++f +++
  MMETSP0890-20130614|2887_1 26 TFASSEIKDDREIVLTAVTQNGFALRFARQE 56
                6889999********************9987 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.014
   PF08864.5 38 hFvenaekkpraleisakgseeepfafykgn 68
                +F  ++ k++r ++++a+  +++ ++f  ++
  MMETSP0890-20130614|2887_1 51 RFARQELKNDREIVLAAVTQNGWTLKFASQE 81
                6889999********************9876 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.013
   PF08864.5  37 vhFvenaekkpraleisakgseeepfaf 64 
                  +F +++ k++r ++++a+  ++ +faf
  MMETSP0890-20130614|2887_1 100 LEFASQELKNDREIVLAAVTQDDHEFAF 127
                 689999********************99 PP

>> PF11641.3  Glycosylphosphatidylinositol-anchored merozoite surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.085   1.3e+02       8      32 ..       4      28 ..       1      34 [. 0.88
   2 ?   -1.0   0.0      0.51   7.7e+02       9      28 ..      30      49 ..      24      55 .. 0.77
   3 ?    1.6   0.0      0.08   1.2e+02       7      25 ..      53      71 ..      46      80 .. 0.80
   4 ?    0.5   0.0      0.18   2.7e+02       6      29 ..      77     100 ..      68     104 .. 0.76
   5 ?    5.8   0.0    0.0041       6.3       3      33 ..      99     129 ..      97     132 .] 0.88

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.085
   PF11641.3  8 rkelkgkretllskiiksdgaltil 32
                 +e k+ re +l  + ++ galt+ 
  MMETSP0890-20130614|2887_1  4 NEEFKNDREIVLIAVKRNGGALTFA 28
                689**********999999999985 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.51
   PF11641.3  9 kelkgkretllskiiksdga 28
                 e+k+ re +l+ + ++  a
  MMETSP0890-20130614|2887_1 30 SEIKDDREIVLTAVTQNGFA 49
                79999999999988766555 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.08
   PF11641.3  7 lrkelkgkretllskiiks 25
                 r+elk+ re +l+ + ++
  MMETSP0890-20130614|2887_1 53 ARQELKNDREIVLAAVTQN 71
                589**********988765 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.18
   PF11641.3   6 alrkelkgkretllskiiksdgal 29 
                    +elk+ re  l+ + ++  al
  MMETSP0890-20130614|2887_1  77 FASQELKDDREVALAAVSQNGRAL 100
                 557899999999998877666665 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.0041
   PF11641.3   3 slealrkelkgkretllskiiksdgaltilq 33 
                 +le   +elk+ re +l+ + + d  +++l 
  MMETSP0890-20130614|2887_1  99 ALEFASQELKNDREIVLAAVTQDDHEFAFLG 129
                 678889*******************999986 PP

>> PF08678.5  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.13     2e+02      69      96 ..      20      47 ..       3      63 .. 0.79
   2 ?    7.1   0.0    0.0027       4.1      67      96 ..      68      97 ..      53     108 .. 0.82
   3 ?    3.6   0.0     0.033        50      69      96 ..      95     122 ..      86     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.13
   PF08678.5 69 qlGlpLklltkgLqvfrkvvyekmndek 96
                ++G  L+++++ ++  r++v+++++++ 
  MMETSP0890-20130614|2887_1 20 RNGGALTFASSEIKDDREIVLTAVTQNG 47
                5799999999999999999999888776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0027
   PF08678.5 67 ivqlGlpLklltkgLqvfrkvvyekmndek 96
                + q+G+ Lk++++ L+  r+v ++++ ++ 
  MMETSP0890-20130614|2887_1 68 VTQNGWTLKFASQELKDDREVALAAVSQNG 97
                569************999999888887765 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.033
   PF08678.5  69 qlGlpLklltkgLqvfrkvvyekmndek 96 
                 q+G  L+++++ L+  r++v++++++++
  MMETSP0890-20130614|2887_1  95 QNGRALEFASQELKNDREIVLAAVTQDD 122
                 89******************99999887 PP

>> PF14100.1  Methane oxygenase PmoA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.012        18     117     164 ..       9      56 ..       4      69 .. 0.82
   2 ?    5.9   0.1    0.0036       5.5     102     148 ..      44      90 ..      18      97 .. 0.69
   3 ?    6.9   0.0    0.0019       2.9     101     147 ..      68     114 ..      56     124 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.012
   PF14100.1 117 EertitvsatddgawlldftstltasdadvtlgspgyGglfwRaprsl 164
                   r+i   a+++++ +l+f+s     d++++l+     g+++R++r+ 
  MMETSP0890-20130614|2887_1   9 NDREIVLIAVKRNGGALTFASSEIKDDREIVLTAVTQNGFALRFARQE 56 
                 5688888888888999999999889999****************9975 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0036
   PF14100.1 102 eeleWedqdgevllkEertitvsatddgawlldftstltasdadvtl 148
                 +++ +  +  ++ lk  r+i  +a+++++w+l+f+s+    d++v l
  MMETSP0890-20130614|2887_1  44 TQNGFALRFARQELKNDREIVLAAVTQNGWTLKFASQELKDDREVAL 90 
                 55555555556678899999999999999999999986666667765 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0019
   PF14100.1 101 teeleWedqdgevllkEertitvsatddgawlldftstltasdadvt 147
                 ++++ W+ +   + lk+ r+++ +a+++++++l+f+s+    d++++
  MMETSP0890-20130614|2887_1  68 VTQNGWTLKFASQELKDDREVALAAVSQNGRALEFASQELKNDREIV 114
                 56777888888888888888888888888888888887555555555 PP

>> PF01890.11  Cobalamin synthesis G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.017        26      37      69 ..      26      57 ..      17      62 .. 0.87
   2 ?    5.5   0.0     0.011        17      41      70 ..      55      83 ..      51      99 .. 0.82
   3 ?    2.4   0.0       0.1   1.6e+02      35      56 ..      99     120 ..      78     130 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.017
  PF01890.11 37 aiatidlKadepgllelaeelglplrtfsaeeL 69
                ++a+ ++K d + +l+++++ g+ lr+  ++eL
  MMETSP0890-20130614|2887_1 26 TFASSEIKDDREIVLTAVTQNGFALRFA-RQEL 57
                589*********************9987.5555 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.011
  PF01890.11 41 idlKadepgllelaeelglplrtfsaeeLa 70
                 +lK+d + +l+++++ g+ l++ s+ eL+
  MMETSP0890-20130614|2887_1 55 QELKNDREIVLAAVTQNGWTLKFASQ-ELK 83
                689*******************9854.555 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.1
  PF01890.11  35 vaaiatidlKadepgllelaee 56 
                   ++a+ +lK+d + +l+++++
  MMETSP0890-20130614|2887_1  99 ALEFASQELKNDREIVLAAVTQ 120
                 3356777777777777666665 PP

>> PF12310.3  Transcription factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.59     9e+02       3      24 ..      16      37 ..      14      43 .. 0.80
   2 ?    0.2   0.0       0.4   6.1e+02       3      23 ..      41      61 ..      39      67 .. 0.83
   3 ?    2.6   0.0     0.073   1.1e+02       3      24 ..      66      87 ..      64      90 .. 0.83
   4 ?    4.5   0.0     0.019        28       3      24 ..      91     112 ..      89     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.59
   PF12310.3  3 avvqkkelvfefasngvddeeq 24
                ++v  ++ ++ fas++++d  +
  MMETSP0890-20130614|2887_1 16 IAVKRNGGALTFASSEIKDDRE 37
                6788899999999999976654 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.4
   PF12310.3  3 avvqkkelvfefasngvddee 23
                ++v +++ ++ fa+++ ++  
  MMETSP0890-20130614|2887_1 41 TAVTQNGFALRFARQELKNDR 61
                6789999*******9997665 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.073
   PF12310.3  3 avvqkkelvfefasngvddeeq 24
                a+v +++  ++fas++ +d  +
  MMETSP0890-20130614|2887_1 66 AAVTQNGWTLKFASQELKDDRE 87
                68999***********977654 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.019
   PF12310.3   3 avvqkkelvfefasngvddeeq 24 
                 a+v +++ ++efas++ ++  +
  MMETSP0890-20130614|2887_1  91 AAVSQNGRALEFASQELKNDRE 112
                 68999***********977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 416.21
//
Query:       MMETSP0890-20130614|2891_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.80
# Mc/sec: 200.69
//
Query:       MMETSP0890-20130614|2892_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-21   73.9   0.8      1e-10   40.9   0.3    2.6  3  PF00400.27 WD domain, G-beta repeat
    0.00034   18.8   1.8      0.091   10.8   0.2    2.1  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.023   14.2   0.0    1.1  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.9e-11   1.8e-07       1      39 []       5      43 ..       5      43 .. 0.92
   2 !   40.9   0.3   2.3e-14     1e-10       5      39 .]      50      84 ..      47      84 .. 0.96
   3 ?   -1.0   0.0      0.37   1.7e+03       1      15 [.      88     102 ..      88     104 .] 0.80

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 3.9e-11
                TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                gec++tl++  s V  va+sp+  + la+g  D+ +r+W+
  MMETSP0890-20130614|2892_1  5 GECLKTLEHY-SYVFTVAWSPSnETQLATGAGDNEVRIWN 43
                5777777777.****************************7 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 2.3e-14
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH++ V+++a+s dg  l+s+S+D+t+rlWd
  MMETSP0890-20130614|2892_1 50 RELVGHEDDVNSIAYSRDGITLVSASDDHTCRLWD 84
                6799******************************9 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.37
                 TEEEEEEESSSSSEE CS
  PF00400.27   1 geckatlrgHtspVt 15 
                 g++++++rg t+ V+
  MMETSP0890-20130614|2892_1  88 GTQLRIFRGATAKVC 102
                 578999999998886 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1   0.00013      0.58     233     253 ..      29      49 ..      15      67 .. 0.76
   2 !   10.8   0.2     2e-05     0.091     234     257 ..      71      94 ..      57     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00013
   PF11715.3 233 fvftlsrDgkLRvWnletgqc 253
                  ++t   D+++R+Wn++t  c
  MMETSP0890-20130614|2892_1  29 QLATGAGDNEVRIWNTDTSEC 49 
                 55566669************9 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2e-05
   PF11715.3 234 vftlsrDgkLRvWnletgqclrtt 257
                 +++ s D++ R+W++++g++lr  
  MMETSP0890-20130614|2892_1  71 LVSASDDHTCRLWDVTNGTQLRIF 94 
                 5699****************8765 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     5e-06     0.023      53     146 ..       8      99 ..       2     103 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5e-06
   PF08662.6  53 vvelkkegpihdvaWspkskefaviyGkmpakislfdlkvnviskl..kekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiakaeasna 146
                   +l++   +  vaWsp+ +e  +  G  ++++++++ + +   +l  +e+  N+i +s  g  ++ a    +     ++dv + +++  ++ + a
  MMETSP0890-20130614|2892_1   8 LKTLEHYSYVFTVAWSPS-NETQLATGAGDNEVRIWNTDTSECRELvgHEDDVNSIAYSRDGITLVSASDDHT---CRLWDVTNGTQLRIFRGATA 99 
                 556777777889999985.556778899999999999988887777334567899999999988888765544...56666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:01.63
# Mc/sec: 152.90
//
Query:       MMETSP0890-20130614|2899_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-08   31.7   0.0    8.2e-08   31.6   0.0    1.1  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.015   14.2   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
      0.083   11.8   0.0      0.092   11.6   0.0    1.1  1  PF08392.7  FAE1/Type III polyketide synthase-like protein


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.8e-11   8.2e-08     103     149 ..       2      69 ..       1      91 [. 0.71

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.8e-11
                 HHHHHHHHHHHHHH.TCEE-S--SGGGEEEE.TT--E......EE------EEE..............C CS
  PF00069.20 103 ialqilegleylHs.ngiiHrDLKpeNiLld.kkgel......kiaDFGlakkl..............e 149
                 +a++i++gl+y+H+  ++++ DLKp+N+L++  +         k++ FG++  +               
  MMETSP0890-20130614|2899_1   2 VAYKIAKGLAYMHEtCNLCFWDLKPSNVLVEiLDM-NptvgavKLSGFGCSGGIgctwayaspetralL 69 
                 689***********66*************984222.2467999*******9766555544444444443 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.4e-06     0.015     108     153 ..       2      54 ..       1      77 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHHHHT.TEEEST-SGGGEEEET......TTEEEE-----CEES CS
  PF07714.12 108 falqiakGmeyLesk.klvHrdLaarNvLlee......ekvvkisDfGLardi 153
                 +a++iakG++y+++  +l   dL   NvL+e          vk+s fG +  i
  MMETSP0890-20130614|2899_1   2 VAYKIAKGLAYMHETcNLCFWDLKPSNVLVEIldmnptVGAVKLSGFGCSGGI 54 
                 689*********9863799***********97777765679999999987655 PP

>> PF08392.7  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05     0.092     122     149 ..      27      54 ..      17      74 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
   PF08392.7 122 samvvnryklredvksynLsGmGCsagl 149
                 s+++v+  ++   v +++LsG GCs g+
  MMETSP0890-20130614|2899_1  27 SNVLVEILDMNPTVGAVKLSGFGCSGGI 54 
                 578899999****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 380.11
//
Query:       MMETSP0890-20130614|2904_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-23   81.6   6.4    1.4e-17   62.8   0.8    3.0  3  PF13374.1  Tetratricopeptide repeat
    1.2e-20   73.0   0.3    3.8e-20   71.5   0.3    1.6  1  PF13424.1  Tetratricopeptide repeat
    1.6e-10   40.3   0.6    2.1e-10   39.9   0.4    1.2  1  PF13414.1  TPR repeat
    1.7e-10   39.7   1.1      8e-09   34.5   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
    9.5e-10   37.5   3.3    1.2e-08   34.0   0.3    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.8e-09   37.9   6.9    6.1e-05   23.4   0.8    1.6  2  PF13432.1  Tetratricopeptide repeat
    5.6e-08   32.0   2.6    3.5e-07   29.5   0.4    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.4e-07   31.0   3.2     0.0013   18.6   0.1    2.8  2  PF13431.1  Tetratricopeptide repeat
    1.4e-05   25.2   0.9    2.5e-05   24.4   0.5    1.7  2  PF13428.1  Tetratricopeptide repeat
    2.2e-05   23.7   0.6    5.7e-05   22.4   0.1    1.7  2  PF13181.1  Tetratricopeptide repeat
    0.00032   19.7   0.0    0.00077   18.5   0.0    1.6  2  PF10516.4  SHNi-TPR
    0.00077   19.5   0.6     0.0016   18.5   0.1    1.8  2  PF07721.9  Tetratricopeptide repeat
     0.0022   18.2   0.2          2    8.7   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
     0.0033   16.3   0.0     0.0033   16.3   0.0    1.0  1  PF04910.9  Transcriptional repressor TCF25
  ------ inclusion threshold ------
      0.023   15.0   0.2      0.047   14.0   0.1    1.5  1  PF13174.1  Tetratricopeptide repeat
      0.081   12.9   0.0      0.086   12.8   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
       0.12   11.3   0.0       0.14   11.0   0.0    1.1  1  PF13429.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0014       1.1      31      42 .]       1      12 [.       1      12 [. 0.95
   2 !   62.8   0.8   1.7e-20   1.4e-17       1      42 []      13      54 ..      13      54 .. 0.98
   3 !   12.1   0.0   0.00015      0.12       1      17 [.      55      71 .]      55      71 .] 0.93

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0014
   PF13374.1 31 irrrllGddHPd 42
                ir++ lG++HPd
  MMETSP0890-20130614|2904_1  1 IREECLGPNHPD 12
                899********8 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 1.7e-20
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +aa+lnnLA +lra+g+y+eA +l+e+al ir++ lG++HP+
  MMETSP0890-20130614|2904_1 13 VAATLNNLAELLRAQGKYDEAMPLYERALRIREETLGPNHPN 54
                8****************************************5 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00015
   PF13374.1  1 taaalnnLAlalrargr 17
                +a +lnnLA +l ++g+
  MMETSP0890-20130614|2904_1 55 VAESLNNLAGLLENQGK 71
                79***********9995 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.3   4.7e-23   3.8e-20       1      61 [.      10      71 .]      10      71 .] 0.97

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 4.7e-23
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgd 61
                hpd+a++lnnla++lr++g+ydeA  lye+al +  ++lg++hp++a +lnnla l++ +g+
  MMETSP0890-20130614|2904_1 10 HPDVAATLNNLAELLRAQGKYDEAMPLYERALRIrEETLGPNHPNVAESLNNLAGLLENQGK 71
                9*********************************88889********************997 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.4   2.6e-13   2.1e-10       2      52 ..      13      71 .]      12      71 .] 0.86

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.6e-13
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgk 52
                +A +l++l++ l  +g+ydeA  +ye+Al+++        pn ae ++nlA +++++gk
  MMETSP0890-20130614|2904_1 13 VAATLNNLAELLRAQGKYDEAMPLYERALRIReetlgpnhPNVAESLNNLAGLLENQGK 71
                799***************************966667744466666**********9995 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1     1e-11     8e-09       1      35 [.      16      50 ..      16      51 .. 0.92
   2 ?    4.4   0.1     0.043        35       1      14 [.      58      71 .]      58      71 .] 0.91

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1e-11
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdplda 35
                +l+nLa+l +++g+y++A  lyeraL+++++ l++
  MMETSP0890-20130614|2904_1 16 TLNNLAELLRAQGKYDEAMPLYERALRIREETLGP 50
                79**********************99999987765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.043
   PF13176.1  1 allnLarlysrlgd 14
                +l+nLa l +++g+
  MMETSP0890-20130614|2904_1 58 SLNNLAGLLENQGK 71
                79*********996 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.3   1.5e-11   1.2e-08       1      32 [.      14      45 ..      14      46 .. 0.94
   2 ?    4.5   0.1     0.031        25       1      16 [.      56      71 .]      56      71 .] 0.93

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.5e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a +l+nl+ +++ +gkydeA   ye+AL++++
  MMETSP0890-20130614|2904_1 14 AATLNNLAELLRAQGKYDEAMPLYERALRIRE 45
                679**************************975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.031
                HHHHHHHHHHHHHTT- CS
  PF00515.23  1 akalynlGnaylklgk 16
                a++l+nl+ ++ ++gk
  MMETSP0890-20130614|2904_1 56 AESLNNLAGLLENQGK 71
                799***********97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3   9.4e-08   7.5e-05      27      62 ..      10      50 ..       6      53 .. 0.81
   2 !   23.4   0.8   7.6e-08   6.1e-05       2      45 ..      19      70 ..      18      71 .] 0.91

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 9.4e-08
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal.....alaP 62
                +P+ a  l +lae+l ++g++deA  l+++al      l+P
  MMETSP0890-20130614|2904_1 10 HPDVAATLNNLAELLRAQGKYDEAMPLYERALrireeTLGP 50
                49999999*****************9999999565555555 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 7.6e-08
   PF13432.1  2 alArallraGdydeAlaaleaalala........Peaaeallllaeallrlg 45
                 lA++l ++G+ydeA +++e+al+          P  ae l +la +l  +g
  MMETSP0890-20130614|2904_1 19 NLAELLRAQGKYDEAMPLYERALRIReetlgpnhPNVAESLNNLAGLLENQG 70
                589****************99999999****999999999999999998887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.4   4.4e-10   3.5e-07       1      31 [.      14      44 ..      14      47 .. 0.92
   2 ?    2.8   0.0      0.15   1.2e+02       1      16 [.      56      71 .]      56      71 .] 0.91

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 4.4e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a  l+nl+++++++g+y+eA  ++e+Al++ 
  MMETSP0890-20130614|2904_1 14 AATLNNLAELLRAQGKYDEAMPLYERALRIR 44
                5789************************986 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHTT- CS
  PF07719.12  1 aealynlGlayyklgd 16
                ae l+nl+ +++++g+
  MMETSP0890-20130614|2904_1 56 AESLNNLAGLLENQGK 71
                789**********996 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.7e-06    0.0013       9      32 ..      10      33 ..       7      34 .. 0.93
   2 !   11.8   0.3   0.00025       0.2       9      28 ..      52      71 .]      36      71 .] 0.73

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-06
   PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
                +P+ a  +nnLAell ++G+++eA
  MMETSP0890-20130614|2904_1 10 HPDVAATLNNLAELLRAQGKYDEA 33
                789999****************99 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00025
   PF13431.1  9 dPnnadaynnLAelllnnGd 28
                +Pn a+++nnLA ll n+G+
  MMETSP0890-20130614|2904_1 52 HPNVAESLNNLAGLLENQGK 71
                5888*************996 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.5   3.1e-08   2.5e-05       2      30 ..      15      48 ..      13      65 .. 0.78
   2 ?   -1.5   0.0       6.3   5.1e+03       4      15 ..      59      70 ..      56      71 .] 0.69

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.1e-08
   PF13428.1  2 eallalarallalGdpdeAiallrrala.....l 30
                ++l  la++l+a+G +deA+ l++ral+     l
  MMETSP0890-20130614|2904_1 15 ATLNNLAELLRAQGKYDEAMPLYERALRireetL 48
                67789**********************9555553 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 6.3
   PF13428.1  4 llalarallalG 15
                l  la +l+++G
  MMETSP0890-20130614|2904_1 59 LNNLAGLLENQG 70
                556888888877 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     7e-08   5.7e-05       2      31 ..      15      44 ..      14      47 .. 0.92
   2 ?   -0.8   0.0       1.9   1.5e+03       2      15 ..      57      70 ..      56      71 .] 0.66

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7e-08
                --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
                ++++nl++++r  G+yd+A+  +e+al + 
  MMETSP0890-20130614|2904_1 15 ATLNNLAELLRAQGKYDEAMPLYERALRIR 44
                689************************986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.9
                --TTT---HHHHTT CS
   PF13181.1  2 kayynlGdiYrqlG 15
                ++++nl+ ++++ G
  MMETSP0890-20130614|2904_1 57 ESLNNLAGLLENQG 70
                56777777777766 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.3   1.9e+03      30      36 ..       1       7 [.       1       8 [. 0.77
   2 !   18.5   0.0   9.6e-07   0.00077       3      37 ..      16      50 ..      14      51 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.3
   PF10516.4 30 Lreqllp 36
                +re++l 
  MMETSP0890-20130614|2904_1  1 IREECLG 7 
                7999986 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 9.6e-07
   PF10516.4  3 vydlLGEiSlEnEnFpqAveDlrkaLeLreqllpp 37
                ++  L+E+   ++++++A   +++aL +re++l p
  MMETSP0890-20130614|2904_1 16 TLNNLAELLRAQGKYDEAMPLYERALRIREETLGP 50
                6788***************************9976 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     2e-06    0.0016       2      26 .]      15      39 ..      14      39 .. 0.91
   2 ?   -2.0   0.0       8.6   6.9e+03       4      15 ..      59      70 ..      56      70 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2e-06
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                ++l +LA++l a+G +deA  l er
  MMETSP0890-20130614|2904_1 15 ATLNNLAELLRAQGKYDEAMPLYER 39
                6788***************999987 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 8.6
                H---HHHHHH-- CS
   PF07721.9  4 llaLArallalG 15
                l +LA +l  +G
  MMETSP0890-20130614|2904_1 59 LNNLAGLLENQG 70
                557776666655 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0025         2      65      81 ..       9      25 ..       4      28 .. 0.89
   2 !    8.3   0.0    0.0034       2.7      60      84 ..      46      70 ..      26      70 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0025
   PF14357.1 65 eHPklagtlrnildsLa 81
                +HP++a+tl+n+++ L 
  MMETSP0890-20130614|2904_1  9 NHPDVAATLNNLAELLR 25
                7************9997 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0034
   PF14357.1 60 erFeaeHPklagtlrnildsLanmG 84
                e    +HP++a+ l+n++  L n G
  MMETSP0890-20130614|2904_1 46 ETLGPNHPNVAESLNNLAGLLENQG 70
                556668************9999865 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.2e-06    0.0033      40      86 ..      14      60 ..       4      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.2e-06
   PF04910.9 40 vdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnas 86
                  tL +l+e++r qg++ +A+ l eraL i e+ + p+  ++ ++ +
  MMETSP0890-20130614|2904_1 14 AATLNNLAELLRAQGKYDEAMPLYERALRIREETLGPNHPNVAESLN 60
                679******************************99999866665555 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.8e-05     0.047       5      28 ..      19      42 ..      19      44 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.8e-05
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la++++++g++deA+ ++er ++
  MMETSP0890-20130614|2904_1 19 NLAELLRAQGKYDEAMPLYERALR 42
                69*******************986 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.086      25      57 ..      14      47 ..       4      66 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
                HHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
   PF12895.2 25 daylyalAlclylngeykrAyellrk.leldsss 57
                +a l +lA+ l  +g+y++A+ l+++ l +++++
  MMETSP0890-20130614|2904_1 14 AATLNNLAELLRAQGKYDEAMPLYERaLRIREET 47
                4556669**************9999885544444 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.14     146     176 ..      14      44 ..       7      49 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
   PF13429.1 146 alfllaraellrqegqkkkAlrllrralalk 176
                 a++l  +aellr +g+ ++A+ l++ral+  
  MMETSP0890-20130614|2904_1  14 AATLNNLAELLRAQGKYDEAMPLYERALRIR 44 
                 6778899*********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 321.02
//
Query:       MMETSP0890-20130614|2896_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-06   27.5   0.0    1.7e-05   25.0   0.0    2.4  2  PF00691.15 OmpA family
  ------ inclusion threshold ------
        4.2    7.6   7.4         12    6.0   5.1    1.8  1  PF13408.1  Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> PF00691.15  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.67   4.6e+03      46      73 ..      17      44 ..      10      68 .. 0.53
   2 !   25.0   0.0   2.4e-09   1.7e-05       5      97 .]     461     578 ..     457     579 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.67
  PF00691.15 46 eynwdLSlrRAaaVvqyLqnegidpsrl 73
                e  w+ +++R + V++ + ++ ++ +++
  MMETSP0890-20130614|2896_1 17 ELEWNEAQKRDEIVWNEFAAQLVADQNV 44
                4466666666666666666655555544 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 2.4e-09
  PF00691.15   5 gsaeltakakktLeelaevlkyqeekd.qieieGh..............tdn.....tgssey.......nwdLSlrRAaaVvqyLqneg.idps....rlavegfgesqplanedtdearaknr 97 
                 + a +++++   L+ l   lk  +++   +++eGh              + n          +       +   Sl RA aV+++L+n+g +d++    r+ v+g g s+ +  ++++ ++ +nr
  MMETSP0890-20130614|2896_1 461 NLAVIKEESYPMLNLLGGTLK--RNPGlCVRLEGHtnsecgldcdgtrpC-NnntcqA----NfgdgkggAVGFSLSRASAVRDWLVNNGaVDKDyvdlRIDVAGLGGSRRIIRDTEAPDNHRNR 578
                 667899999999**99999*9..444446******555555555555541.0444430....23444456******************88688888999999******88888877777776665 PP

>> PF13408.1  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.1    0.0018        12       6      34 ..     358     396 ..     356     412 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0018
   PF13408.1   6 lrCgeCGskmtr........rkrk...gkkiyYrCsnyrk 34 
                 l+C++CG k+          r  k   g +  YrC+ +  
  MMETSP0890-20130614|2896_1 358 LICAHCGTKLSNntniameaR-GKaatGQRGHYRCQQCTS 396
                 78*******988444444321.2244477799***98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       832  (0.0608543); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:01.07
# Mc/sec: 1325.83
//
Query:       MMETSP0890-20130614|2906_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.1   0.1       0.11   11.8   0.0    1.2  1  PF07539.7 Down-regulated in metastasis


Domain annotation for each model (and alignments):
>> PF07539.7  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.9e-06      0.11      45     123 ..      39     117 ..      10     125 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.9e-06
   PF07539.7  45 knpaitpYkdnLknLlddkkfrdeltsflvsseessieeehreevmplvlri.LyGrvqskkkskskk.garkkavlsfLg 123
                 + ++i ++k+ L++ ++   +r +l+sfl       +++++ ++++ ++++  ++ rvqs+  ++s    +++++v  fL+
  MMETSP0890-20130614|2906_1  39 RGNEIAKFKQSLERYVEHGDLRGDLLSFLWRHLP--VRSQDYKNIIRMLIKSgVIIRVQSEDDKTSAVdDKTRAVVPFFLP 117
                 6779*************************99976..9************99434556666665555554455655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 535.19
//
Query:       MMETSP0890-20130614|2907_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-35  119.1  97.9    1.4e-09   38.0   7.3    6.9  6  PF13517.1 Family description


Domain annotation for each model (and alignments):
>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   7.7   6.3e-09   8.6e-05       1      59 [.     177     236 ..     177     236 .. 0.72
   2 !   38.0   7.3     1e-13   1.4e-09       1      59 [.     227     282 ..     227     282 .. 0.96
   3 !   31.7   3.6   9.7e-12   1.3e-07       3      60 ..     277     334 ..     277     335 .. 0.83
   4 !   34.6   6.1   1.2e-12   1.6e-08       1      60 [.     324     383 ..     324     383 .. 0.89
   5 !   36.6   7.4   2.8e-13   3.8e-09       1      60 [.     373     432 ..     373     433 .. 0.90
   6 !   26.4   8.0   4.1e-10   5.6e-06       1      60 [.     422     483 ..     422     484 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 6.3e-09
   PF13517.1   1 DldgDGdlDlvvag..dgglrlylnngdGtftdvaet.slgaggggtgvafgDldgDGdlDl 59 
                 D+dgD d D++ ++  d+++ +y n+g+ +f+    + +l +g+    v + D+d DGd D+
  MMETSP0890-20130614|2907_1 177 DVDGDNDIDVLSGSnvDDTIAWYENDGSQNFV--KHViGLFSGSFDLVVFAIDVDSDGDVDV 236
                 9************7245666666666555555..4432444455567899**********96 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 1e-13
   PF13517.1   1 DldgDGdlDlvvagdgglrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDl 59 
                 D+d DGd D++ ++ g+l ++ n+g+ tft+   + +++++gg+g+ + D+dgDGd D+
  MMETSP0890-20130614|2907_1 227 DVDSDGDVDVISIDGGTLAWWENDGNQTFTE---HIISSTNGGAGIFAIDVDGDGDGDI 282
                 9*************************99985...899999****************998 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 9.7e-12
   PF13517.1   3 dgDGdlDlvvagdgglrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDll 60 
                 dgDGd D++  +  +  l +++++G+ +++++t +++ +g+ +v+++D+d DGd D+l
  MMETSP0890-20130614|2907_1 277 DGDGDIDIITPDFLNDILAWWENNGSESFTRRTISSTVDGPLSVYAVDVDKDGDIDVL 334
                 9***********86655555555666666678899999******************97 PP

  == domain 4    score: 34.6 bits;  conditional E-value: 1.2e-12
   PF13517.1   1 DldgDGdlDlvvagdgglrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDll 60 
                 D+d DGd D++ a+ + +++ ++++dG+ +++  +  ++   ++++ + D+dgDGd D++
  MMETSP0890-20130614|2907_1 324 DVDKDGDIDVLSASGNDNTIAWYENDGSQSFTLHIIASDVFFARAIFATDIDGDGDVDVV 383
                 9************9888888888888888887778888889999**************97 PP

  == domain 5    score: 36.6 bits;  conditional E-value: 2.8e-13
   PF13517.1   1 DldgDGdlDlvvagdgglrlylnngdGtftdvaetslgaggggtgvafgDldgDGdlDll 60 
                 D+dgDGd D+v +g g+ +l++ ++dGt t++  +  ++ +g+ gv++ D+d+D d D++
  MMETSP0890-20130614|2907_1 373 DIDGDGDVDVVGCGFGSDELLWFENDGTETFTKFVITASADGAGGVYAIDIDNDDDIDIV 432
                 9*************9999999999999888888887788888889**************8 PP

  == domain 6    score: 26.4 bits;  conditional E-value: 4.1e-10
   PF13517.1   1 DldgDGdlDlvvagdgglrlylnng.dGtftdvaetslgaggggt.gvafgDldgDGdlDll 60 
                 D+d+D d D+v++ ++ + + ++++ dG++  ++e+ ++ +     +v + D+dgD d D+l
  MMETSP0890-20130614|2907_1 422 DIDNDDDIDIVLSAYNDNVVAWYENdDGSGASFTEHIITNSAAEVnAVFAIDVDGDDDIDVL 483
                 9************77666666665548999999999888885555389999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.20
# Mc/sec: 1060.39
//
Query:       MMETSP0890-20130614|2908_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-09   36.8   0.6    2.3e-09   36.8   0.4    2.2  2  PF00397.21 WW domain
  ------ inclusion threshold ------
      0.057   13.4   0.1       0.09   12.7   0.1    1.3  1  PF01794.14 Ferric reductase like transmembrane component


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.22   1.5e+03      18      25 ..     243     250 ..     243     250 .. 0.91
   2 !   36.8   0.4   3.3e-13   2.3e-09       1      31 []     325     354 ..     325     354 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.22
                 EEETTT-- CS
  PF00397.21  18 YyNheTge 25 
                 Y+N +T++
  MMETSP0890-20130614|2908_1 243 YHNVATQQ 250
                 9*****96 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 3.3e-13
                 ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddddGrvYYyNheTgetqWekP 31 
                 lppgW +  d + G++YY++h++++t+W +P
  MMETSP0890-20130614|2908_1 325 LPPGWSVEQDAS-GKTYYIDHINKRTSWRPP 354
                 8****9666578.***************988 PP

>> PF01794.14  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.3e-05      0.09      16      92 ..      63     169 ..      40     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
  PF01794.14  16 alRkrlltrltglsldslllfHkllGlaalvlallHliaflvllvrisgi...............................deqlesaaqlsdpeqllGviallvlvl 92 
                 a R  +l+++++++  ++ l+ + +G++a++ +++H+  ++++++ +                                  d+  + ++   + +  +G+ia++v ++
  MMETSP0890-20130614|2908_1  63 ADRFCILKKWRRVPELDAQLAKRTIGVVAII-IFVHAWSTMFFFLMWGTYtesfddddfndetgdraincftgllecrvpnDKVTNAQKIAYQIFRPVGFIAFVVALW 169
                 33555666999999999999******99876.68995555444444443344699999999999999999999999999999999999999999999******99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.69
# Mc/sec: 1243.33
//
Query:       MMETSP0890-20130614|2922_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-09   35.9   0.4    3.8e-09   35.9   0.3    1.9  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.38   5.2e+03      36      39 .]       1       4 [.       1       4 [. 0.90
   2 !   35.9   0.3   2.8e-13   3.8e-09       1      39 []       8      46 ..       8      46 .. 0.97
   3 ?   -2.2   0.0      0.29   3.9e+03      16      21 ..      64      69 ..      56      70 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.38
                EEEE CS
  PF00400.27 36 rlWd 39
                r+Wd
  MMETSP0890-20130614|2922_1  1 RIWD 4 
                8**9 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 2.8e-13
                TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                g+ k+tl++Ht    + +fs dg++++sgS+D+t r+Wd
  MMETSP0890-20130614|2922_1  8 GQIKRTLEEHTRIALDSCFSTDGNRVVSGSWDHTARIWD 46
                5789**********************************9 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.29
                EEEEES CS
  PF00400.27 16 cvafsp 21
                +++f p
  MMETSP0890-20130614|2922_1 64 SCDFTP 69
                555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 278.92
//
Query:       MMETSP0890-20130614|2925_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0003   20.4   0.2    0.00053   19.6   0.1    1.5  1  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.9e-08   0.00053       2      29 ..      53      80 .]      52      80 .] 0.93

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.9e-08
                EEEEEEESSSSSEEEEEEESSSTEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasg 29
                  ++t ++H+++++cv +s d++ +a++
  MMETSP0890-20130614|2925_1 53 SSLRTVDAHNGFINCVTYSFDSSTIATA 80
                578999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 368.67
//
Query:       MMETSP0890-20130614|2928_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-26   90.5   1.4      2e-14   52.6   0.4    2.1  2  PF00400.27 WD domain, G-beta repeat
    0.00077   18.9   0.2       0.39   10.3   0.1    2.5  2  PF07676.7  WD40-like Beta Propeller Repeat
      0.005   14.9   0.1     0.0084   14.2   0.1    1.5  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.023   14.3   0.0        0.6    9.6   0.0    2.0  2  PF08662.6  Eukaryotic translation initiation factor eIF2A
       0.11   12.4   0.0       0.35   10.7   0.0    1.7  2  PF09992.4  Predicted periplasmic protein (DUF2233)
       0.11   12.4   0.0         11    6.1   0.0    2.1  2  PF00545.15 ribonuclease


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.4   8.8e-18     2e-14       3      39 .]       8      44 ..       6      44 .. 0.95
   2 !   37.2   0.0   6.6e-13   1.5e-09       2      38 ..      49      85 ..      48      86 .. 0.96

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 8.8e-18
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++ tl+gHt++V+++afspdg++++++S+Dgt r+W+
  MMETSP0890-20130614|2928_1  8 LLLTLSGHTDWVSACAFSPDGTRVVTASDDGTARVWN 44
                6889********************************7 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 6.6e-13
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38
                +++ +l+gH+  V+++af pdg++++++++D++ r+W
  MMETSP0890-20130614|2928_1 49 TLLLVLEGHNLDVYDCAFYPDGKRIITAGDDRKTRVW 85
                6789********************************* PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00017      0.39      13      28 ..      21      36 ..      16      43 .. 0.82
   2 !    6.2   0.0    0.0033       7.5      14      24 ..      64      74 ..      61      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
                EEEE-----EEEEEE- CS
   PF07676.7 13 ePawSPDGkkivFtSn 28
                + a+SPDG++ v +S+
  MMETSP0890-20130614|2928_1 21 ACAFSPDGTRVVTASD 36
                579*******997776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0033
                EEE-----EEE CS
   PF07676.7 14 PawSPDGkkiv 24
                 a+ PDGk+i+
  MMETSP0890-20130614|2928_1 64 CAFYPDGKRII 74
                5899*****96 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.7e-06    0.0084     224     275 ..      25      63 ..      12      94 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.7e-06
   PF11715.3 224 sssevegqtfvftlsrDgkLRvWnletgqclrttdileaaellpadslsyip 275
                 s+    + t v+t s Dg+ RvWn e+g++l +         l+  +l ++ 
  MMETSP0890-20130614|2928_1  25 SP----DGTRVVTASDDGTARVWNAENGTLLLV---------LEGHNLDVYD 63 
                 44....556677******************333.........3333333333 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00026       0.6     144     182 ..      17      58 ..       9      63 .. 0.72
   2 ?    6.1   0.0    0.0032       7.2     125     169 ..      38      84 ..      35      88 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
   PF08662.6 144 snatlvewspdgryvlTat...tsprlrvdngfkiwsysGkl 182
                  + + + +spdg+ v+Ta+   t+ +   +ng  +  ++G+ 
  MMETSP0890-20130614|2928_1  17 DWVSACAFSPDGTRVVTASddgTARVWNAENGTLLLVLEGHN 58 
                 56789*************933345555557777666666665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0032
   PF08662.6 125 Geleiydvk..klkkiakaeasnatlvewspdgryvlTattsprlrv 169
                 G+  +++ +  +l  + + ++ +  ++ + pdg+ ++Ta    + rv
  MMETSP0890-20130614|2928_1  38 GTARVWNAEngTLLLVLEGHNLDVYDCAFYPDGKRIITAGDDRKTRV 84 
                 67778888854555667777888999************987766666 PP

>> PF09992.4  Predicted periplasmic protein (DUF2233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.35      35      77 ..      15      57 ..       4      84 .. 0.71
   2 ?    1.5   0.0       0.1   2.3e+02      39      64 ..      61      86 ..      56      94 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00015
                ---..--EEEE----EE-HHHHGGGGGEEEEE...---B.---- CS
   PF09992.4 35 geeakgalaltkdgklvvttqdldeadlkeaigagplLv.knGk 77
                +++   a+a+++dg+ vvt++d  +a++++a   g+lL+  +G 
  MMETSP0890-20130614|2928_1 15 HTDWVSACAFSPDGTRVVTASDDGTARVWNA-ENGTLLLvLEGH 57
                5566789************************.447666635554 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.1
                .--EEEE----EE-HHHHGGGGGEEE CS
   PF09992.4 39 kgalaltkdgklvvttqdldeadlke 64
                 + +a+ +dgk ++t+ d  + +++ 
  MMETSP0890-20130614|2928_1 61 VYDCAFYPDGKRIITAGDDRKTRVWC 86
                6789999****999888877766665 PP

>> PF00545.15  ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.014        31      52      68 ..      25      41 ..      13      51 .. 0.74
   2 ?    6.1   0.0    0.0046        11      52      73 ..      67      89 ..      54      93 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.014
                ----EEEEEETTT-BET CS
  PF00545.15 52 srGadRvVygsddkkcg 68
                s++  RvV+ sdd ++ 
  MMETSP0890-20130614|2928_1 25 SPDGTRVVTASDDGTAR 41
                8999*******976543 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0046
                ----EEEEEETTT-BETE.EEEE CS
  PF00545.15 52 srGadRvVygsddkkcgl.iyht 73
                 ++ +R+++ +dd+k+ + ++ t
  MMETSP0890-20130614|2928_1 67 YPDGKRIITAGDDRKTRVwCTET 89
                8999*******988855434544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 464.60
//
Query:       MMETSP0890-20130614|2931_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   17.8   1.8     0.0055   16.6   1.2    1.7  1  PF13118.1 Protein of unknown function (DUF3972)


Domain annotation for each model (and alignments):
>> PF13118.1  Protein of unknown function (DUF3972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.2   4.1e-07    0.0055      69     120 ..      50     101 ..      21     108 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.1e-07
   PF13118.1  69 igtilnlhekvldakdETiealknenkfLKealysmqelydedrktiellre 120
                 + t+l+  e ++++k+E i +lk+  ++L+e+  +   ly+e+++  e l e
  MMETSP0890-20130614|2931_1  50 LRTLLKASEMLVQSKQELIDSLKQSISDLRESKNQSIALYEESKNKQEALYE 101
                 689*****************************************99888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1052  (0.0769456); expected 273.4 (0.02)
Passed bias filter:                      564  (0.0412522); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.83
# Mc/sec: 840.17
//
Query:       MMETSP0890-20130614|2948_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 209.21
//
Query:       MMETSP0890-20130614|2942_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-05   22.8   0.0      0.013   15.0   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
      0.014   14.9   1.2       0.39   10.2   0.1    2.3  2  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-06     0.013      18      50 ..       4      36 ..       2      40 .. 0.92
   2 !    6.4   0.0   0.00097       6.6      18      43 ..      41      66 ..      37      67 .] 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.9e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a +   +L++++p++l n+ w+++ 
  MMETSP0890-20130614|2942_1  4 APALFNAIADVARAKLSGFNPQALANTAWAFAT 36
                5689**************************986 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00097
  PF06743.10 18 aeeffeklasalereLdsispellln 43
                a ++f+++a +  ++Ld + p++l n
  MMETSP0890-20130614|2942_1 41 APALFNAIADVALTKLDDFTPQALAN 66
                6789******************9866 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.6e-05      0.39      17      36 ..       7      30 ..       4      30 .. 0.84
   2 ?    3.7   0.0    0.0064        44      17      36 ..      44      67 .]      41      67 .] 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.6e-05
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         FNpQ  ANt
  MMETSP0890-20130614|2942_1  7 LFNAIAdvarAKLSGFNPQALANT 30
                888888887778899********9 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0064
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         F pQ  ANt
  MMETSP0890-20130614|2942_1 44 LFNAIAdvalTKLDDFTPQALANT 67
                78888888888888999**99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.57
# Mc/sec: 276.82
//
Query:       MMETSP0890-20130614|2954_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   13.0   0.2      0.078   12.2   0.1    1.4  1  PF13446.1 A repeated domain in UCH-protein
      0.057   12.7   0.1       0.13   11.5   0.0    1.6  1  PF05391.6 Lsm interaction motif


Domain annotation for each model (and alignments):
>> PF13446.1  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.1e-05     0.078       4      40 ..      52      89 ..      51      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
   PF13446.1  4 vdeAlelLeieedtdDdviitayeakvndep.gdidll 40
                +d+AlelLe++++  D  i +++e  ++ ++ ++++++
  MMETSP0890-20130614|2954_1 52 LDDALELLEATNNNVDGNIAAMAEQLMKQDDrDSMLKA 89
                689**********************9996554666665 PP

>> PF05391.6  Lsm interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.9e-05      0.13       2      18 ..       6      22 ..       5      22 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.9e-05
   PF05391.6  2 kasdtakpkSNDDFRKL 18
                ++ +++k  SN+DFR L
  MMETSP0890-20130614|2954_1  6 PICSDEKRNSNADFREL 22
                677899999******65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.49s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 575.97
//
Query:       MMETSP0890-20130614|2958_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-12   45.0   0.0    9.3e-12   44.5   0.0    1.2  1  PF00294.19 pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.019   15.0   0.0      0.048   13.7   0.0    1.7  1  PF00403.21 Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.4e-15   9.3e-12      89     274 ..      20     228 ..      10     250 .. 0.75

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.4e-15
                 EEEEEEEEE-TTCEEEEEEE---GGGHHHHHH..HHCHCHHTTEEEEHH....EEE-SSSHHHHHHHHHHHHHHTT.EEECCCCCT--..HHCHHHHCSEESEECCCHHHHHHHCCSSH......HCHHHHHHHHHHHHH-T-SEEEEB------EEEE..................SS--EEE--.-SS--SB-TT---TTT--HHHHHHTT--H CS
  PF00294.19  89 rtglalilvdgdgertivfnrgaaadltpeel..pedllaeadvlylsg....allseplpeatlealieaaknngkfdpnlrdplwsqaleklrellpladilkpNeeEaealtgekd......ndveevlaalhklkakgaktvvvtlGkdGallve..................kdgevhvppvpkvkvvDttGAGDafvagflagllagksl 274
                 +tg a++ v ++g r   f+ ga+++++ e +      l++++ ++++      l+  p  +++l +l  +++     + +  d++  +    +++  +  di+ +N++Ea++l+   +      ++  ++++ l++  ++   ++ vt G +Ga l+                   + ++v + ++p+ ++ +++GAGDaf+ag++++ l   + 
  MMETSP0890-20130614|2958_1  20 PTGNAIVPVYENG-RGCFFDSGANREFSIEDIlsALWRLKNVACIHIGYphllPLCRGPQLASLLPRLNVLTSLDL--NGVPIDAFLGD--GIIDAPAAVTDIIHANADEARILLRPLLpsspeeTTLSDLASLLQQ--HTNSALAAVTDGVNGAALAVtpdieriavsklpdewiaETARVAAYAIPPDTQPNANGAGDAFCAGLISAVLLRLDG 228
                 5666666666654.66666666666666666666555666666666666544444444444555555555555555..55556666643..5566677999********************8888777777777777..33349***********99999***************999999999999**********************9985554 PP

>> PF00403.21  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     7e-06     0.048       8      41 ..     211     244 ..     206     255 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7e-06
  PF00403.21   8 hCagCaakvekalselpgVysvkvdlgkkkvvVe 41 
                  +a Ca+ +  +l++l+g +s+++dl  +++++ 
  MMETSP0890-20130614|2958_1 211 GDAFCAGLISAVLLRLDGDSSITLDLVGRLATLS 244
                 5788************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.46s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 1234.73
//
Query:       MMETSP0890-20130614|2955_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-105  351.3   5.7   3.1e-105  351.1   4.0    1.0  1  PF00268.16 Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
      0.053   13.0   0.5       0.13   11.7   0.1    1.7  2  PF01233.14 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
       0.17   11.5   1.8       0.33   10.6   0.6    1.9  2  PF08025.6  Spider antimicrobial peptide


Domain annotation for each model (and alignments):
>> PF00268.16  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.1   4.0  6.8e-109  3.1e-105       2     280 ..      39     319 ..      38     320 .. 0.98

  Alignments for each domain:
  == domain 1    score: 351.1 bits;  conditional E-value: 6.8e-109
                 CTTS--TT-T..TS-SSHHHHHHHHHHHHT---GGGS-GGGGHHHHHT.S-HHHHHHHHHHHHHHHTTHHHHHHHHHHTHHCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS.-HHHHHHHHHCCCC-TTCHHHHHHHHHHCCSSSC.HHHHHHHHHHHHHTTTT--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHTSHHHHHHHHHHHHHHHHHHHHHHHTTS-GGG....HHHHHHHHHHHHHHHHHH-----SS-TTTS-TTC CS
  PF00268.16   2 kllkenkkrf..ykiehpdilelykkavanrWlaeevdlskDikdvek.LseaerefykfvlaflaaaddlvnenlveslsaeveikdiehyygeqeaiEnvHsevYsliletlikdekerealvaaieedpaikkkvqwllakvadaes.laeklvafilvEgifFsssFasiaylkkrgllpglcqsnelIsRDEalHtsaacllynnllkkekpeekrieellreaveieiefieakapvkvlllnveaikqyvefvAdrllvelglkklfkvenadvpl 280
                 +ll+en++r+  ++i+h d++e+ykka++++W+aee+dl+ D kd+e+ L+e+er+f+ +vlaf+aa+d++v enl+ ++ +ev+ ++++++yg+q+aiEn+HsevYsl+++t+i+de  +++l++ai + p++++k++w  + +++a++ + ++lvaf++vEgifFsssF++i+++kkrgl+pgl++snelIsRDE+lHt++aclly+++   ++++ ++i ++++ aveie ef+++++pv+++++n ++++ yv f+Adrl+v+lg++k ++++n+++++
  MMETSP0890-20130614|2955_1  39 PLLQENRHRYvlFPIQHSDVWEFYKKAESSFWTAEELDLNTDRKDFEEkLNENERHFILQVLAFFAASDGIVLENLAMNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDEDHKYKLLHAIDTFPTVQQKAKWCFQYMDKANAsFVQRLVAFAAVEGIFFSSSFCAIFWIKKRGLMPGLTFSNELISRDEGLHTDFACLLYKHII--RRLPYEQILNIITSAVEIEHEFVKSALPVELIGMNSSMMCDYVSFCADRLIVDLGYEKHYNANNPFDFM 319
                 678999999889**********************************988************************************************************************************************999988*************************************************************..8*****************************************************************998 PP

>> PF01233.14  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.8e-05      0.13      32      95 ..     136     199 ..     120     206 .. 0.88
   2 ?   -2.4   0.0      0.65   2.9e+03     128     149 ..     242     263 ..     237     269 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
                 TSHHHHHHHHHHHHHHSSCTTTTTEEE---HHHHHHHHT-----GGGEE-EEETTTTEEEEEEE CS
  PF01233.14  32 ddeeqlkelykllaenyvedddamfrfdyskeflkwalkapGfkkdwhvGvrvkktkklvafis 95 
                   e+   e+y+ll + y+ d+d  +++ ++ + +    +   +  ++     ++  ++lvaf +
  MMETSP0890-20130614|2955_1 136 AIENIHSEVYSLLIDTYIRDEDHKYKLLHAIDTFPTVQQKAKWCFQYMDKANASFVQRLVAFAA 199
                 4566678************************999999999999999999999999999999965 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHTTT--EEEE CS
  PF01233.14 128 apvlikeitrrvnlegifqaiy 149
                 a +l k i rr+  e+i + i 
  MMETSP0890-20130614|2955_1 242 ACLLYKHIIRRLPYEQILNIIT 263
                 6789999999999999987664 PP

>> PF08025.6  Spider antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.59   2.7e+03      22      36 ..      64      78 ..      63      79 .. 0.81
   2 ?   10.6   0.6   7.2e-05      0.33      16      32 ..     338     355 ..     333     356 .] 0.84

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.59
   PF08025.6 22 KvRKQFKeASDLDKN 36
                K+   F +A  LD N
  MMETSP0890-20130614|2955_1 64 KAESSFWTAEELDLN 78
                5666799******87 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 7.2e-05
   PF08025.6  16 vFK.GVGKvRKQFKeASD 32 
                 +FK GVG + KQFK+  D
  MMETSP0890-20130614|2955_1 338 YFKaGVGDAAKQFKTDDD 355
                 5777**********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.79
# Mc/sec: 1079.88
//
Query:       MMETSP0890-20130614|2959_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-05   22.0   0.3    0.00027   20.3   0.2    1.9  1  PF01465.15 GRIP domain
  ------ inclusion threshold ------
       0.13   11.2  17.6      0.014   14.5   3.1    3.1  3  PF04582.7  Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   3.9e-08   0.00027       8      41 ..     550     583 ..     550     588 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.9e-08
  PF01465.15   8 LKNVllqFLeqkesngreqllpVistlLkFseee 41 
                 LK  +++FL + +  +r +llp+is +L++ ++e
  MMETSP0890-20130614|2959_1 550 LKATFFKFLNSDSQAERLTLLPIISNILQLEPAE 583
                 7999***************************998 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.022   1.5e+02      59     123 ..      17      88 ..       6     115 .. 0.63
   2 ?   14.5   3.1     2e-06     0.014      57     170 ..     136     249 ..     114     256 .. 0.77
   3 ?    3.8   0.7    0.0035        24      86     153 ..     247     315 ..     241     324 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.022
   PF04582.7  59 sdlsadlq....dvtsslddvkaelk.el.stevaalqssvdslsseladlse.lvsahdaalsslqtevda 123
                 s l+++lq    + ++ l++ +a+ k el  + v+a+++s + l +e  ++ + l   h++al  ++te+  
  MMETSP0890-20130614|2959_1  17 STLKSALQkkdeEHAKLLAECEAQHKaELeAARVEAMEDSSEFLRAEYDGVINaLKARHESALEAMRTEIRK 88 
                 333333331111344445555444331331357999999999999999987651556788999999998865 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2e-06
   PF04582.7  57 klsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervksl..esgsstglsfsdPlslad 170
                 ++sd++      ++  +++kael+  +te++ l++ +  l+ e +   +l   h++ ++++++   a   +  ++k+++ a    i++le +v++l  es++ ++ +++   +lad
  MMETSP0890-20130614|2959_1 136 RISDIKKVRASAIKKQNELKAELDAAETEITRLETRIRDLTQENT--RKLQAVHEEKIADIKKCRAAAVKKQNEMKAELDAADAVISKLETQVHALrlESTTQSQTEWTASKRLAD 249
                 566676666677777777788888888888888887777766544..4566779999************************************98533888877777666666655 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0035
   PF04582.7  86 vaalqssv.dslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervksle 153
                 +a ++ s+ d ls  +++l++  s++d+a+ +l+ e +  +t+   l+  ++++  +  +le+  ++le
  MMETSP0890-20130614|2959_1 247 LADVERSLnDRLSEAMTSLTQAESERDDAIRKLEVEKEHRATADKSLQQYLASTKNEKQQLEDAQRQLE 315
                 556666762567888999***************999999999888888877776666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2382  (0.174225); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.07u 0.41s 00:00:02.48 Elapsed: 00:00:01.56
# Mc/sec: 987.73
//
Query:       MMETSP0890-20130614|2960_1  [L=822]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-12   47.2  19.2    7.2e-05   22.1   0.6    5.7  6  PF12799.2  Leucine Rich repeats (2 copies)
    1.6e-11   42.4  26.7       0.19   11.7   0.1    9.8  9  PF00560.28 Leucine Rich Repeat
    8.4e-11   41.3  18.8    3.4e-05   23.4   1.6    5.1  6  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.011   15.6  18.9          5    7.6   0.0    8.3  9  PF13504.1  Leucine rich repeat
      0.039   13.0   0.0      0.079   12.0   0.0    1.4  1  PF12768.2  Cortical protein marker for cell polarity
      0.065   12.5   0.0        0.1   11.9   0.0    1.3  1  PF09623.5  CRISPR-associated protein NE0113 (Cas_NE0113)
      0.072   13.1   0.2       0.37   10.8   0.0    2.1  2  PF08995.5  Necrosis inducing protein-1
        2.1    8.5  24.7        8.6    6.6   0.2    8.3  9  PF13516.1  Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00031      0.53       3      37 ..     358     393 ..     356     399 .. 0.91
   2 !   14.5   0.2     1e-05     0.018       2      37 ..     407     444 ..     406     451 .. 0.88
   3 !    9.6   0.1   0.00036      0.61       6      37 ..     460     491 ..     455     500 .. 0.75
   4 !   22.1   0.6   4.2e-08   7.2e-05       1      37 [.     503     539 ..     503     548 .. 0.90
   5 ?    0.3   0.0       0.3   5.1e+02      26      36 ..     558     568 ..     557     578 .. 0.70
   6 ?   -2.3   0.0       1.9   3.2e+03      28      36 ..     589     597 ..     588     604 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00031
   PF12799.2   3 LevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  ++L L +N+I+ ++p  + + +  + ++LsnN ++
  MMETSP0890-20130614|2960_1 358 ITFLELPSNQISgSIPQGIFSSSIIERIDLSNNFLD 393
                 689*********89**99***************985 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1e-05
   PF12799.2   2 nLevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpis 37 
                 +L++L L +N  + d+p+  +++++ L +L+Ls+N ++
  MMETSP0890-20130614|2960_1 407 QLKELLLFSNYFSgDIPGClFKRFTELSYLDLSRNFLQ 444
                 79***********99***73699************986 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00036
   PF12799.2   6 LdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 L++ +  +  +l++ l +L++L +L+ s+N + 
  MMETSP0890-20130614|2960_1 460 LYIDHLGLVgSLDA-LQQLSSLSNLDASHNYFR 491
                 55555554438999.***************984 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 4.2e-08
   PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                 + L +LdLs N +   lp+ + +  nL+ L+Ls+N +s
  MMETSP0890-20130614|2960_1 503 PRLYELDLSWNLLNgTLPA-FDKNINLRRLDLSHNEFS 539
                 5799**********77***.***************998 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.3
   PF12799.2  26 LktLnLsnNpi 36 
                 L +LnL+ N++
  MMETSP0890-20130614|2960_1 558 LSSLNLADNNF 568
                 56677776665 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 1.9
   PF12799.2  28 tLnLsnNpi 36 
                 +L++s+N++
  MMETSP0890-20130614|2960_1 589 ELDVSRNQF 597
                 588899987 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.068   1.2e+02       2      21 ..     358     379 ..     357     380 .. 0.87
   2 ?    5.5   0.1     0.012        20       3      17 ..     383     398 ..     382     399 .. 0.89
   3 ?    3.4   0.0     0.059     1e+02       1      20 [.     407     428 ..     407     430 .. 0.88
   4 !   10.3   0.2   0.00033      0.57       2      18 ..     433     450 ..     432     453 .. 0.90
   5 ?    3.0   0.0     0.082   1.4e+02       1      19 [.     479     499 ..     479     502 .. 0.81
   6 ?    5.7   0.1      0.01        17       2      20 ..     505     523 ..     504     525 .. 0.87
   7 !   11.7   0.1   0.00011      0.19       1      19 [.     527     546 ..     527     549 .. 0.88
   8 !    7.1   0.1    0.0036       6.2       2      19 ..     558     576 ..     558     579 .. 0.86
   9 ?    4.0   0.0     0.039        66       4      19 ..     589     606 ..     587     620 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.068
                 ESEEEETSSBCB.CHHHH.HHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps.lsn 21 
                 ++ L L +N+++ s+p + +s+
  MMETSP0890-20130614|2960_1 358 ITFLELPSNQISgSIPQGiFSS 379
                 6889999**********98875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.012
                 SEEEETSSBCB.CHHH CS
  PF00560.28   3 eeLdLsgNnlt.slpp 17 
                 e++dLs+N l  +lp+
  MMETSP0890-20130614|2960_1 383 ERIDLSNNFLDgNLPC 398
                 89********999986 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.059
                 TESEEEETSSBCB.CHHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.ls 20 
                 +L+eL L +N ++ ++p   ++
  MMETSP0890-20130614|2960_1 407 QLKELLLFSNYFSgDIPGClFK 428
                 69***************98776 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00033
                 ESEEEETSSBCB.CHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                 L +LdLs+N l+ slp++
  MMETSP0890-20130614|2960_1 433 LSYLDLSRNFLQgSLPNE 450
                 88**************96 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.082
                 TESEEEETSSBCB.CHHHH.H CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.l 19 
                 +L  Ld s+N +  s+  + l
  MMETSP0890-20130614|2960_1 479 SLSNLDASHNYFRgSIDAEfL 499
                 6889******88879988844 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.01
                 ESEEEETSSBCB.CHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                 L eLdLs N l  +lp  + 
  MMETSP0890-20130614|2960_1 505 LYELDLSWNLLNgTLPA-FD 523
                 889*********99998.76 PP

  == domain 7    score: 11.7 bits;  conditional E-value: 0.00011
                 TESEEEETSSBCB.CHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                 nL++LdLs+N ++ s+ + +
  MMETSP0890-20130614|2960_1 527 NLRRLDLSHNEFSgSITDQF 546
                 8************9998765 PP

  == domain 8    score: 7.1 bits;  conditional E-value: 0.0036
                 ESEEEETSSBCB.CHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                 L +L+L +Nn++ +lp+ +
  MMETSP0890-20130614|2960_1 558 LSSLNLADNNFCgTLPEVF 576
                 679*********99**966 PP

  == domain 9    score: 4.0 bits;  conditional E-value: 0.039
                 EEEETSSBCB.CHHHH.H CS
  PF00560.28   4 eLdLsgNnlt.slpps.l 19 
                 eLd+s+N++  s+++  +
  MMETSP0890-20130614|2960_1 589 ELDVSRNQFRcSVSNTfF 606
                 7******88857666533 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00025      0.43       3      59 ..     334     390 ..     333     394 .. 0.74
   2 !   15.0   0.2   8.3e-06     0.014       1      41 [.     406     448 ..     406     464 .. 0.84
   3 !   18.0   0.4     9e-07    0.0015      19      61 .]     472     515 ..     455     515 .. 0.90
   4 !   23.4   1.6     2e-08   3.4e-05       1      60 [.     478     537 ..     478     538 .. 0.91
   5 !    8.5   3.2   0.00086       1.5       3      38 ..     505     539 ..     504     568 .. 0.72
   6 !    6.0   0.8    0.0051       8.6       2      46 ..     527     577 ..     526     581 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00025
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59 
                 ++eL L++  l+   +++F+ l++ + L L +n ++ si+ ++f++   ++ ++Ls+N
  MMETSP0890-20130614|2960_1 334 VSELLLDSVGLRGQFPTTFSTLKHITFLELPSNQISgSIPQGIFSSS-IIERIDLSNN 390
                 56777777778877788888888888888888888448888888874.6777777776 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 8.3e-06
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk.sis 41 
                 ++LkeL L +N ++ +ip   Fk+ + L +LdLs+n l+ s++
  MMETSP0890-20130614|2960_1 406 SQLKELLLFSNYFSgDIPGCLFKRFTELSYLDLSRNFLQgSLP 448
                 58999999999777799999**************999863554 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 9e-07
   PF13855.1  19 gaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 +a+++ls+L  Ld s+n    si++e ++ +p+L eL+Ls+N l
  MMETSP0890-20130614|2960_1 472 DALQQLSSLSNLDASHNYFrGSIDAEFLEAFPRLYELDLSWNLL 515
                 599****************66*********************76 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 2e-08
   PF13855.1   1 pnLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 ++L++Ld s+N ++ +i+ ++++  ++L +LdLs n l+   p af++  +Lr L+Ls+N+
  MMETSP0890-20130614|2960_1 478 SSLSNLDASHNYFRgSIDAEFLEAFPRLYELDLSWNLLNGTLP-AFDKNINLRRLDLSHNE 537
                 589********9998*******************999964444.8***************8 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.00086
   PF13855.1   3 LkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlk 38 
                 L eLdLs N l  ++p  aF +  nL+ LdLs+n+ +
  MMETSP0890-20130614|2960_1 505 LYELDLSWNLLNgTLP--AFDKNINLRRLDLSHNEFS 539
                 7788888887774555..8888888888888888874 PP

  == domain 6    score: 6.0 bits;  conditional E-value: 0.0051
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkgl......snLkvLdLsgnnl.ksispeafk 46 
                 nL++LdLs+N+++   ++ F+          L +L+L +nn   ++ pe+f 
  MMETSP0890-20130614|2960_1 527 NLRRLDLSHNEFSGSITDQFNVFaaqqdrGVLSSLNLADNNFcGTL-PEVFY 577
                 8999999999888555566665556677778888888888873444.45665 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.4   4.1e+03       2      14 ..     357     369 ..     356     373 .. 0.75
   2 ?   -1.2   0.0       2.5   4.3e+03       7      14 ..     386     393 ..     383     397 .. 0.73
   3 ?    0.0   0.0      0.96   1.6e+03       2      14 ..     407     419 ..     406     423 .. 0.79
   4 ?    3.6   0.1     0.064   1.1e+02       3      17 .]     433     448 ..     431     448 .. 0.78
   5 ?    0.8   0.0      0.55   9.4e+02       2      13 ..     479     490 ..     478     494 .. 0.85
   6 ?    5.5   0.2     0.015        25       1      17 []     503     520 ..     503     520 .. 0.80
   7 ?    7.6   0.0    0.0029         5       2      13 ..     527     538 ..     526     544 .. 0.87
   8 ?    0.6   0.1      0.61     1e+03       3      17 .]     558     573 ..     556     573 .. 0.76
   9 ?    1.1   0.0      0.43   7.4e+02       5      14 ..     589     598 ..     587     604 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.4
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 + ++L L +n++ 
  MMETSP0890-20130614|2960_1 357 HITFLELPSNQIS 369
                 5689***999985 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.5
   PF13504.1   7 dLsgnrLt 14 
                 dLs+n L+
  MMETSP0890-20130614|2960_1 386 DLSNNFLD 393
                 99***986 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.96
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 +LkeL L +n++ 
  MMETSP0890-20130614|2960_1 407 QLKELLLFSNYFS 419
                 79******99975 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.064
   PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                 L +LdLs+n L+ sLP
  MMETSP0890-20130614|2960_1 433 LSYLDLSRNFLQgSLP 448
                 889******9963566 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.55
   PF13504.1   2 nLkeLdLsgnrL 13 
                 +L +Ld s+n++
  MMETSP0890-20130614|2960_1 479 SLSNLDASHNYF 490
                 899*******87 PP

  == domain 6    score: 5.5 bits;  conditional E-value: 0.015
   PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                 p+L eLdLs+n L+ +LP
  MMETSP0890-20130614|2960_1 503 PRLYELDLSWNLLNgTLP 520
                 79*********8853465 PP

  == domain 7    score: 7.6 bits;  conditional E-value: 0.0029
   PF13504.1   2 nLkeLdLsgnrL 13 
                 nL++LdLs+n++
  MMETSP0890-20130614|2960_1 527 NLRRLDLSHNEF 538
                 9*********86 PP

  == domain 8    score: 0.6 bits;  conditional E-value: 0.61
   PF13504.1   3 LkeLdLsgnrL.tsLP 17 
                 L  L+L++n++  +LP
  MMETSP0890-20130614|2960_1 558 LSSLNLADNNFcGTLP 573
                 678*****99625676 PP

  == domain 9    score: 1.1 bits;  conditional E-value: 0.43
   PF13504.1   5 eLdLsgnrLt 14 
                 eLd+s+n++ 
  MMETSP0890-20130614|2960_1 589 ELDVSRNQFR 598
                 8******985 PP

>> PF12768.2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05     0.079     159     251 ..     638     766 ..     621     790 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.6e-05
   PF12768.2 159 dkdqilllsGqlnlsdfGnvsaalydgtswiPyllts........sssgesgsissifle...............................ksnsfssskdlkklsrgiVVlIsLaiAlgtvfLlgllgiil 251
                 ++ q l + G+++ls+ G+ +  +   t  +P ++ s         s+   g+ +                                     ++  ss +++++ ++g+V++ s+a  ++++fL+ + +i+ 
  MMETSP0890-20130614|2960_1 638 ENTQYLYIYGEFTLSTQGTCKFEFGSITATTPAIFESssrvaclvPSDAPIGQATV---TiasycedyastetlgdnfvpmtfqilqqtpaPTYIRSSTSKKSESNQGAVIGGSIAAVIALIFLIFICYILG 766
                 56666667777777666666666666666666666663344433312222222222...0223555555566666666666666666677744444455668999**********************99985 PP

>> PF09623.5  CRISPR-associated protein NE0113 (Cas_NE0113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05       0.1       5      40 ..     231     267 ..     227     289 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6e-05
   PF09623.5   5 LlatlGlsPqVvTetLdaLleege.ipdevvvittke 40 
                 L a   ++P VvT+t d+++++++ +p+e++vi t  
  MMETSP0890-20130614|2960_1 231 LTAYSATEPMVVTITYDLIYTSNYiLPEELQVIKTMY 267
                 56677799****************99*******9965 PP

>> PF08995.5  Necrosis inducing protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2     2e+03      39      59 ..     312     332 ..     296     352 .. 0.69
   2 ?   10.8   0.0   0.00022      0.37      18      69 ..     650     701 ..     632     707 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.2
   PF08995.5  39 seclhesesclvpgdccrgks 59 
                  e l  ++  ++pg +c    
  MMETSP0890-20130614|2960_1 312 VEDLSTGDCKIIPGVVCDADG 332
                 56788899999***9997653 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00022
   PF08995.5  18 vfstpdrcrytlccegalkavseclheses...clvpgdccrgksrltlcsygeg 69 
                  +st   c++ +   g++ a + ++ es s   clvp d+  g++ +t++sy e 
  MMETSP0890-20130614|2960_1 650 TLSTQGTCKFEF---GSITATTPAIFESSSrvaCLVPSDAPIGQATVTIASYCED 701
                 557777777766...666777777777765555*******************985 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.39   6.6e+02       1      21 [.     355     375 ..     355     378 .. 0.83
   2 ?    1.1   0.1      0.31   5.2e+02       4      16 ..     382     394 ..     379     398 .. 0.82
   3 ?   -1.4   0.0         2   3.4e+03       2      19 ..     406     423 ..     405     428 .. 0.81
   4 ?    2.8   0.0     0.085   1.4e+02       4      14 ..     433     443 ..     430     450 .. 0.85
   5 ?    3.3   0.0      0.06     1e+02       1      16 [.     477     493 ..     477     504 .. 0.70
   6 ?    0.3   0.1      0.54   9.2e+02       4      14 ..     505     515 ..     502     519 .. 0.78
   7 ?    6.6   0.2     0.005       8.6       2      16 ..     526     540 ..     525     547 .. 0.76
   8 ?    2.7   0.1     0.093   1.6e+02       4      14 ..     558     568 ..     557     574 .. 0.86
   9 ?   -1.0   0.0       1.5   2.6e+03       6      14 ..     589     597 ..     589     602 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.39
   PF13516.1   1 lknLtsLdLsnNqigdeGlsa 21 
                 lk++t L L +Nqi++   ++
  MMETSP0890-20130614|2960_1 355 LKHITFLELPSNQISGSIPQG 375
                 6899**********9876655 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.31
   PF13516.1   4 LtsLdLsnNqigd 16 
                 ++ +dLsnN +++
  MMETSP0890-20130614|2960_1 382 IERIDLSNNFLDG 394
                 6789*****9876 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2
   PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                 ++L++L L +N ++++  
  MMETSP0890-20130614|2960_1 406 SQLKELLLFSNYFSGDIP 423
                 689****99999988876 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.085
   PF13516.1   4 LtsLdLsnNqi 14 
                 L++LdLs+N +
  MMETSP0890-20130614|2960_1 433 LSYLDLSRNFL 443
                 89*******77 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.06
   PF13516.1   1 lknLtsLdLsnNqi.gd 16 
                 l++L++Ld s+N + g+
  MMETSP0890-20130614|2960_1 477 LSSLSNLDASHNYFrGS 493
                 689*********95333 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.54
   PF13516.1   4 LtsLdLsnNqi 14 
                 L +LdLs N +
  MMETSP0890-20130614|2960_1 505 LYELDLSWNLL 515
                 668******87 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.005
   PF13516.1   2 knLtsLdLsnNqigd 16 
                  nL+ LdLs+N +++
  MMETSP0890-20130614|2960_1 526 INLRRLDLSHNEFSG 540
                 59*********9543 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.093
   PF13516.1   4 LtsLdLsnNqi 14 
                 L+sL+L +N++
  MMETSP0890-20130614|2960_1 558 LSSLNLADNNF 568
                 89*******97 PP

  == domain 9    score: -1.0 bits;  conditional E-value: 1.5
   PF13516.1   6 sLdLsnNqi 14 
                 +Ld+s+Nq+
  MMETSP0890-20130614|2960_1 589 ELDVSRNQF 597
                 69*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.89
# Mc/sec: 2213.26
//
Query:       MMETSP0890-20130614|2953_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-11   42.7   0.0      0.011   15.3   0.0    3.0  3  PF06743.10 FAST kinase-like protein, subdomain 1
    4.2e-05   22.9   7.1      0.039   13.4   0.1    3.2  3  PF07671.6  Protein of unknown function (DUF1601)
  ------ inclusion threshold ------
       0.09   12.5   5.9        1.5    8.5   1.4    2.2  2  PF11255.3  Protein of unknown function (DUF3054)
       0.13   12.3   0.8       0.85    9.7   0.3    2.0  2  PF06946.6  Phage holin
       0.79    9.2   4.9        5.2    6.6   0.2    2.6  3  PF12890.2  Dihydro-orotase-like


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.9e-05     0.079      21      50 ..       8      37 ..       3      40 .. 0.91
   2 !   15.3   0.0     4e-06     0.011      18      50 ..      42      74 ..      38      80 .. 0.92
   3 !   12.1   0.0     4e-05      0.11      18      51 ..      79     112 ..      75     114 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
  PF06743.10 21 ffeklasalereLdsispelllnlvwSlcl 50
                +f ++a a   +L++++p++l n+ w+++ 
  MMETSP0890-20130614|2953_1  8 LFHAIADAAVNKLNGFNPQELANTAWAFAT 37
                7899999*********************86 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 4e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Ld++ p++l n+ w+++ 
  MMETSP0890-20130614|2953_1 42 APALFNAIADAALTKLDGFTPQNLANTAWAFAT 74
                6789***************************96 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 4e-05
  PF06743.10  18 aeeffeklasalereLdsispelllnlvwSlcll 51 
                 a ++f+++a +  ++L++++ ++l n+ w+++++
  MMETSP0890-20130614|2953_1  79 APALFNAIADVARTKLSEFNAQALANTAWAFACI 112
                 6789***************************997 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.4e-05     0.039      17      36 ..       8      31 ..       5      31 .. 0.88
   2 !    5.3   0.1    0.0049        13      17      36 ..      45      68 ..      42      68 .. 0.86
   3 !    7.1   0.3    0.0013       3.6      17      36 ..      82     105 ..      79     105 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+       + FNpQ+ ANt
  MMETSP0890-20130614|2953_1  8 LFHAIAdaavNKLNGFNPQELANT 31
                7888888888889**********9 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0049
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         F pQ+ ANt
  MMETSP0890-20130614|2953_1 45 LFNAIAdaalTKLDGFTPQNLANT 68
                788888888888899********9 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0013
   PF07671.6  17 LlaAIr....rnaerFNpQsIANt 36 
                 L++AI+         FN+Q  ANt
  MMETSP0890-20130614|2953_1  82 LFNAIAdvarTKLSEFNAQALANT 105
                 888888888777899********9 PP

>> PF11255.3  Protein of unknown function (DUF3054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.0     0.001       2.8      10      72 ..       7      73 ..       3      74 .. 0.70
   2 ?    8.5   1.4   0.00055       1.5      23      74 ..      57     112 ..      43     114 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.001
   PF11255.3 10 lvfaliGrlsHgeg..lslagvletalPFligwllaalllgayraeakesp..kaalptgllvWvva 72
                ++f +i+ ++ ++   ++++++++ta+ F+++ + a +l +a+ ++a ++    +    + ++W++a
  MMETSP0890-20130614|2953_1  7 VLFHAIADAAVNKLngFNPQELANTAWAFATASVEAPALFNAIADAALTKLdgFTPQNLANTAWAFA 73
                56777777766655669**************999999998888876655552222333344566665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00055
   PF11255.3  23 g..lslagvletalPFligwllaalllgayraeakesp..kaalptgllvWvvavv 74 
                    ++++++++ta+ F+++ + a +l +a+ + a+++    +a   + ++W++a +
  MMETSP0890-20130614|2953_1  57 LdgFTPQNLANTAWAFATASVEAPALFNAIADVARTKLseFNAQALANTAWAFACI 112
                 34489***************999999988887666554435555566678999875 PP

>> PF06946.6  Phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.015        42      41      82 ..       7      50 ..       3      53 .. 0.81
   2 ?    9.7   0.3   0.00031      0.85      41      85 ..      44      90 ..      26      98 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.015
   PF06946.6 41 ilvgailgalatsldgsg..slatmiwagalagaggtglfeqft 82
                +l  ai  a    l+g     la   wa a a      lf+ ++
  MMETSP0890-20130614|2953_1  7 VLFHAIADAAVNKLNGFNpqELANTAWAFATASVEAPALFNAIA 50
                6778899999999999642279**********999999998765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00031
   PF06946.6 41 ilvgailgalatsldgsg..slatmiwagalagaggtglfeqftnra 85
                 l  ai  a  t ldg     la   wa a a      lf+ +++ a
  MMETSP0890-20130614|2953_1 44 ALFNAIADAALTKLDGFTpqNLANTAWAFATASVEAPALFNAIADVA 90
                367788888889***975338*******************9887755 PP

>> PF12890.2  Dihydro-orotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0019       5.2       5      44 ..       9      47 ..       6      56 .. 0.78
   2 ?    4.1   0.5     0.011        31      19      44 ..      59      84 ..      45     105 .. 0.78
   3 ?    0.9   0.0      0.11     3e+02       7      31 ..      85     108 ..      81     115 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0019
   PF12890.2  5 ltglidlsvhlrelgveakeliettvaaygvtfeaPaait 44
                + +++d +v  +  g + +el +t +a    + eaPa ++
  MMETSP0890-20130614|2953_1  9 FHAIADAAV-NKLNGFNPQELANTAWAFATASVEAPALFN 47
                566666664.3556789*******************9776 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.011
   PF12890.2 19 gveakeliettvaaygvtfeaPaait 44
                g   ++l +t +a    + eaPa ++
  MMETSP0890-20130614|2953_1 59 GFTPQNLANTAWAFATASVEAPALFN 84
                56789*****************8765 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.11
   PF12890.2   7 glidls.vhlrelgveakeliettva 31 
                 +++d++  +l+e+  +a++l +t +a
  MMETSP0890-20130614|2953_1  85 AIADVArTKLSEF--NAQALANTAWA 108
                 5555541356666..99****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 421.18
//
Query:       MMETSP0890-20130614|2964_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-19   68.7   0.1    1.5e-10   40.4   0.0    3.1  3  PF00400.27 WD domain, G-beta repeat
    0.00025   19.2   1.5      0.027   12.5   0.1    2.0  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.9e-06     0.033      25      39 .]       2      16 ..       1      16 [. 0.93
   2 !   40.4   0.0   2.2e-14   1.5e-10       5      39 .]      23      57 ..      19      57 .. 0.95
   3 !   11.6   0.0   2.7e-05      0.18       3      23 ..      63      83 ..      61      87 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.9e-06
                EEEEEETTSEEEEEE CS
  PF00400.27 25 llasgSrDgtirlWd 39
                 lasg +D+++r W+
  MMETSP0890-20130614|2964_1  2 QLASGADDNKVRFWN 16
                69************7 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 2.2e-14
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l+gH+++V+++a+s +g  l+s+S D+t+rlWd
  MMETSP0890-20130614|2964_1 23 RELEGHEGSVNSIAYSLNGMTLVSASPDHTCRLWD 57
                789*******************************9 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 2.7e-05
                EEEEEESSSSSEEEEEEESSS CS
  PF00400.27  3 ckatlrgHtspVtcvafspdg 23
                +++++rg t+ V+ v fsp+ 
  MMETSP0890-20130614|2964_1 63 QLRIFRGATDKVNHVVFSPND 83
                5799***************94 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   5.7e-05      0.39     240     281 ..       9      40 ..       7      47 .. 0.75
   2 !   12.5   0.1   3.9e-06     0.027     222     259 ..      35      69 ..      23      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 5.7e-05
   PF11715.3 240 DgkLRvWnletgqclrttdileaaellpadslsyipepsess 281
                 D+k+R Wn++t+ c         +el+  + +  ++++s ++
  MMETSP0890-20130614|2964_1   9 DNKVRFWNTDTNEC---------RELEGHEGSVNSIAYS-LN 40 
                 9*************.........6777777777777777.44 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.9e-06
   PF11715.3 222 dvsssevegqtfvftlsrDgkLRvWnletgqclrttdi 259
                 + +s  ++g t+v + s D++ R+W+++++++lr    
  MMETSP0890-20130614|2964_1  35 IAYS--LNGMTLV-SASPDHTCRLWDVTNRAQLRIFRG 69 
                 3334..5788888.9*****************876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.73
# Mc/sec: 288.88
//
Query:       MMETSP0890-20130614|2965_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       702  (0.0513458); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 311.53
//
Query:       MMETSP0890-20130614|2967_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 432.20
//
Query:       MMETSP0890-20130614|2968_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   55.5   2.9    3.4e-07   29.5   0.5    2.2  2  PF13516.1  Leucine Rich repeat
    7.9e-09   34.8   6.5    3.4e-07   29.5   0.9    1.4  2  PF12799.2  Leucine Rich repeats (2 copies)
    0.00045   19.7   0.1       0.11   12.4   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
    0.00096   18.8   0.2       0.81   10.0   0.0    2.3  2  PF13504.1  Leucine rich repeat
    0.00097   18.7   1.4      0.082   12.5   1.3    2.1  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.036   14.4   0.0          7    7.2   0.0    2.1  2  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.5   1.5e-10   3.4e-07       1      24 []       9      32 ..       9      32 .. 0.96
   2 !   26.3   0.0   1.6e-09   3.6e-06       1      23 [.      37      59 ..      37      60 .. 0.95

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.5e-10
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                +++L++LdL +N+ig+eG++a+an
  MMETSP0890-20130614|2968_1  9 NTSLQELDLDSNNIGNEGAKAIAN 32
                789*******************97 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.6e-09
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                +++L++L L++N igdeG++aLa
  MMETSP0890-20130614|2968_1 37 NTSLKTLWLNFNEIGDEGAKALA 59
                789*******************8 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   1.9e-05     0.044      20      38 ..       6      24 ..       4      32 .. 0.72
   2 !   29.5   0.9   1.5e-10   3.4e-07       1      38 [.      10      52 ..      10      60 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
   PF12799.2 20 lanLpnLktLnLsnNpisd 38
                l+  ++L++L+L++N+i +
  MMETSP0890-20130614|2968_1  6 LGTNTSLQELDLDSNNIGN 24
                6667888888888888865 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.5e-10
   PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
                t+L++LdL +NnI +     + + l+  ++LktL+L+ N i d
  MMETSP0890-20130614|2968_1 10 TSLQELDLDSNNIGNegakaIANALGTNTSLKTLWLNFNEIGD 52
                79***********65455558777999**************88 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.9e-05      0.11       1      14 [.      11      24 ..      11      37 .. 0.79
   2 !    5.8   0.0    0.0074        17       1      13 [.      39      51 ..      39      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.9e-05
                TESEEEETSSBCBC CS
  PF00560.28  1 nLeeLdLsgNnlts 14
                +L+eLdL++Nn+ +
  MMETSP0890-20130614|2968_1 11 SLQELDLDSNNIGN 24
                7**********984 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0074
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++L L++N + 
  MMETSP0890-20130614|2968_1 39 SLKTLWLNFNEIG 51
                79********986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00035      0.81       1      13 [.      10      22 ..      10      26 .. 0.88
   2 !    6.9   0.0    0.0038       8.8       1      14 [.      38      51 ..      38      54 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00035
   PF13504.1  1 pnLkeLdLsgnrL 13
                ++L+eLdL +n++
  MMETSP0890-20130614|2968_1 10 TSLQELDLDSNNI 22
                69******99987 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0038
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++Lk+L L+ n++ 
  MMETSP0890-20130614|2968_1 38 TSLKTLWLNFNEIG 51
                69*********985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.3   3.6e-05     0.082      20      61 .]       5      50 ..       2      50 .. 0.61
   2 !    7.0   0.0    0.0019       4.3       1      14 [.      38      51 ..      38      59 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-05
   PF13855.1 20 aFkglsnLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61
                a++  ++L++LdL +nn+        ++a+   +sL+ L L  N++
  MMETSP0890-20130614|2968_1  5 ALGTNTSLQELDLDSNNIGnegaKAIANALGTNTSLKTLWLNFNEI 50
                5666678888888888884222333445566666777777766665 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0019
   PF13855.1  1 pnLkeLdLsnNrlk 14
                ++Lk+L+L++N++ 
  MMETSP0890-20130614|2968_1 38 TSLKTLWLNFNEIG 51
                58*********986 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.011        25       1      15 [.      11      25 ..      11      27 .. 0.89
   2 ?    7.2   0.0    0.0031         7       1      15 [.      39      53 ..      39      55 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.011
   PF07723.8  1 sLKtLhLdsvdfddd 15
                sL  L Lds+ + ++
  MMETSP0890-20130614|2968_1 11 SLQELDLDSNNIGNE 25
                8999******99887 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0031
   PF07723.8  1 sLKtLhLdsvdfddd 15
                sLKtL L  +++ d+
  MMETSP0890-20130614|2968_1 39 SLKTLWLNFNEIGDE 53
                8******99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 265.78
//
Query:       MMETSP0890-20130614|2962_1  [L=2282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-33  113.0   0.0    3.9e-32  111.0   0.0    1.9  2  PF02010.10 REJ domain
      0.001   18.9   2.5      0.001   18.9   1.7    2.1  2  PF01825.16 Latrophilin/CL-1-like GPS domain


Domain annotation for each model (and alignments):
>> PF02010.10  REJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   5.7e-36   3.9e-32       9     370 ..     545     985 ..     537     990 .. 0.80
   2 ?   -2.7   0.0      0.18   1.2e+03     376     411 ..    1041    1073 ..    1040    1087 .. 0.81

  Alignments for each domain:
  == domain 1    score: 111.0 bits;  conditional E-value: 5.7e-36
  PF02010.10   9 sahkllynWsvfsvnsnqiltrvln..etteptliippstLpyGe.ytflltvtilseevleatdikkvrvepspLvavIkGGtsrvigyrsnitLDGseSyDP........Dsdshs.sqltyeWlcqrsngr...egcnnplynippeasrssvltipaselkpnleytfkltvskdsrksasaeqtirvvdgepplvsiecvqncngk.........vn.pnsrlvLrgsclncdkd.ikdvtfe..wsl...atllqtseceselp..................................................................tlksetttgrrarnLviregklqpgksyrlslrVrdkeakkg.lAsisfkvNepPvgGrcsvfPleGveletaftvrCqgwkdkdqPLgYevsysqrrasgpyrlLyegsnnrs.ssviLPsgps 370
                 ++ +++y++s  +  +n+ ++++l   + +  +  + p+tL++G  y +++ vt  se +  ++++  +++e s+Lva+I+GG+   i+ r+   L++++S+DP        D   +   +l++eW+c++ +     + c   ++ ++ +++++ +l+i+ + l  ++ y f+++vskd r+ + + q  r+   +pp+v i+ v++ +           vn +++r+vL++   +  ++    +tf+  ws+   at+++                                                                           +        r++  +v+ +++l +g++y+++l+++ ++a++  +A i++ v  +P+gG+++++P +G+++e+ f ++ +gw+++  PL+Y++++        +++L + s + +   v+LP+gp 
  MMETSP0890-20130614|2962_1 545 ETATITYEYSLAQYVGNTLVPTGLAssSIDPTEFYLEPYTLEAGTtYSLTVAVT-DSEIGEMNEATADIQMEISSLVAKIRGGDR-LISQRGIEELSAARSFDPdlapdsngDIILGAaAGLSFEWSCENVDLPtdtTSC---ADALGGTSTTEEILEITRDALIFQT-YRFTVIVSKDTRRASASIQLTRTL--DPPEVFIDAVSTFDLVdtdtgestiVNlQSERFVLEYATFAYRDQsAGALTFTstWSVddeATFSEDA------DledvsrtaltvsridngletgcedddptwfktgqperncdwvaewfhfrcdargddgrfayeackySCTNGCLFLRNQGFFVLSSDALIEGSTYTFRLDATLTGASSSgTALIDIFVPLAPRGGTLTISPEQGITIEDLFDLQASGWTSEYLPLEYQFIA------IGGQVLRTYSADPNaLNVLLPVGPN 985
                 6788999999999999999999999887788899*******7764255566666.99999999999*****************85.56666566678*******44444433333344669********98765444577...999*********************9.***********8555555544444..57888888777654333346667777734668899888884444436666664125555552222222......2445556788888**************************************************877655566677799***************************99888***************************************************......6677776666666558999999975 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.18
  PF02010.10  376 vyvmvsVydnkgarvsvnltitVkpaavnnstieel 411 
                  +++ v + d+ ga ++ ++++ V+  + +n+   el
  MMETSP0890-20130614|2962_1 1041 LTISVAIKDSIGAITKRSTAVIVQSSQLTNE---EL 1073
                  57899******************99999998...33 PP

>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.4         2   1.4e+04      26      34 ..     372     380 ..     363     383 .. 0.62
   2 !   18.9   1.7   1.5e-07     0.001       4      35 ..    1398    1431 ..    1395    1432 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2
  PF01825.16  26 dstttqClC 34 
                      qC+C
  MMETSP0890-20130614|2962_1 372 RDDSSQCSC 380
                 444579**9 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.5e-07
  PF01825.16    4 qCvyWnetqgsWstdGCrvvksdstt..tqClCn 35  
                   Cv W++t  +W ++GC +++++st   ++C C+
  MMETSP0890-20130614|2962_1 1398 ACVTWDSTGRAWEREGCFLNNELSTLdsIVCDCD 1431
                  6******************777776666*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.92u 0.46s 00:00:03.38 Elapsed: 00:00:02.64
# Mc/sec: 2071.40
//
Query:       MMETSP0890-20130614|2963_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-08   32.3   0.1      0.001   18.2   0.0    2.3  2  PF07787.7 Protein of unknown function (DUF1625)
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.22   11.0   0.0    1.4  1  PF07367.6 Fungal fruit body lectin


Domain annotation for each model (and alignments):
>> PF07787.7  Protein of unknown function (DUF1625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.4e-05     0.093      13      49 ..      76     113 ..      64     128 .. 0.78
   2 !   18.2   0.0   1.5e-07     0.001     101     189 ..     212     341 ..     181     357 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
   PF07787.7  13 ekevggste.tysyekeWsselinssrFkkeegheNpk 49 
                 +++ + + e t  y k W s++i s  F+++ +h+Np 
  MMETSP0890-20130614|2963_1  76 TETYNCNCEtTFNYIKGWHSHPIPSLLFNQPGNHHNPL 113
                 3333333335999***********************95 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.5e-07
   PF07787.7 101 kkfqvqddyiYigqnpgnpev................................gDlRvsFeyaeaeqvsvvakqqnn........tllpystedgkeie.lieegeltaeevfkkeaeenalltwvlRla 189
                 + f  ++d ++++ +++ ++                                 gD+R+++++ +++++sv a +  +        +l+   + dg+  + l+++g+ t+ ++ + +a+e ++   + R++
  MMETSP0890-20130614|2963_1 212 QGFVYAGDGYFYNAYEASIAErllkgffqyaegtlfdwqlgdvvaaltgsctaGDIRIKYKVQNPKKLSVLATAVPSrhnkkdpvRLENIVLDDGSIHKaLVYSGSKTPAQMIQAQARESRTSATLARVV 341
                 55555555566666555555556666666666666666666666666666666*******************9988888889999999999999766668**********************99999976 PP

>> PF07367.6  Fungal fruit body lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.2e-05      0.22      23      59 ..     236     272 ..     222     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.2e-05
                 E---SST----EEE----EEEEE--------EEEECT CS
   PF07367.6  23 ktvwkyanggtWtekdgekvLtmggSGtSGmLRfkss 59 
                 k+ ++ya+g+ ++ + g+ v  + gS t+G +R+k +
  MMETSP0890-20130614|2963_1 236 KGFFQYAEGTLFDWQLGDVVAALTGSCTAGDIRIKYK 272
                 789*******************************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1505.82
//
Query:       MMETSP0890-20130614|2971_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   13.8   2.6        7.7    6.4   0.0    3.4  2  PF11108.3 Viral glycoprotein L


Domain annotation for each model (and alignments):
>> PF11108.3  Viral glycoprotein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00056       7.7      56      69 ..       2      15 ..       1      22 [. 0.85
   2 ?    4.7   0.0    0.0018        25      56      71 ..      45      60 ..      39      68 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00056
   PF11108.3 56 GfnvvsFllavlkr 69
                Gf+v sF++ +l  
  MMETSP0890-20130614|2971_1  2 GFDVSSFFVEILAI 15
                9**********975 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0018
   PF11108.3 56 GfnvvsFllavlkrle 71
                Gf+v sF++ +   ++
  MMETSP0890-20130614|2971_1 45 GFDVSSFFVEISDGVK 60
                9********9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 316.94
//
Query:       MMETSP0890-20130614|2973_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 419.36
//
Query:       MMETSP0890-20130614|2972_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-19   68.0  37.7    0.00016   21.0   1.5    7.4  7  PF07699.8  GCC2 and GCC3
    0.00032   20.2  33.8       0.13   11.9   0.2    7.4  9  PF07562.9  Nine Cysteines Domain of family 3 GPCR
  ------ inclusion threshold ------
       0.85    9.6  28.8        2.3    8.2   0.5    6.9  6  PF00020.13 TNFR/NGFR cysteine-rich region


Domain annotation for each model (and alignments):
>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.9e-06    0.0086      10      36 ..     167     200 ..     163     208 .. 0.86
   2 !   13.3   0.1   9.2e-06     0.042       8      36 ..     189     227 ..     183     232 .. 0.84
   3 !   15.2   2.2   2.3e-06     0.011       9      36 ..     217     244 ..     211     273 .. 0.82
   4 ?    0.0   0.0      0.13   5.8e+02      17      36 ..     259     278 ..     251     282 .. 0.63
   5 !   18.3   2.5   2.5e-07    0.0012       6      46 ..     282     322 ..     259     324 .. 0.83
   6 !   21.0   1.5   3.4e-08   0.00016       6      48 .]     333     375 ..     327     375 .. 0.85
   7 !   12.9   1.4   1.2e-05     0.053       6      29 ..     384     407 ..     378     408 .] 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.9e-06
   PF07699.8  10 kCepCprGtY.......kneegqkkCiaCppgtt 36 
                  C+ Cp G Y          +g ++C++Cp g++
  MMETSP0890-20130614|2972_1 167 SCSSCPAGRYlpftidrYRHVGIDSCLECPVGRY 200
                 6*********98888766999999******9976 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 9.2e-06
   PF07699.8   8 nkkCepCprGtY..........kneegqkkCiaCppgtt 36 
                    C +Cp G Y          +  +  ++C aCp+g++
  MMETSP0890-20130614|2972_1 189 IDSCLECPVGRYlsdddtsgnwWLHDDLDDCAACPSGRY 227
                 568**********9999999988899999******9976 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 2.3e-06
   PF07699.8   9 kkCepCprGtYkneegqkkCiaCppgtt 36 
                   C +Cp G Y +e+g  +C+ C pg++
  MMETSP0890-20130614|2972_1 217 DDCAACPSGRYGHETGMAECTLCIPGSF 244
                 5799999999999999999999988865 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.13
   PF07699.8  17 GtYkneegqkkCiaCppgtt 36 
                 G +  +e+ ++ ++Cp+g++
  MMETSP0890-20130614|2972_1 259 GHFVANEEATEELPCPAGRF 278
                 66666666666667777654 PP

  == domain 5    score: 18.3 bits;  conditional E-value: 2.5e-07
   PF07699.8   6 kgnkkCepCprGtYkneegqkkCiaCppgttTskkgskses 46 
                 ++n +C+ C  G+Y++eeg+++C+   +g + + +++++e 
  MMETSP0890-20130614|2972_1 282 SSNIECSSCDPGSYQPEEGKTSCLVAQAGFFVANQNAINEM 322
                 56679******************977766666666666665 PP

  == domain 6    score: 21.0 bits;  conditional E-value: 3.4e-08
   PF07699.8   6 kgnkkCepCprGtYkneegqkkCiaCppgttTskkgsksesdC 48 
                 +++ +C+ C+ G+Y+ +e+q+ Cia  +g + + ++++ e  C
  MMETSP0890-20130614|2972_1 333 SSSVTCSSCQPGFYQTNESQVACIAAQAGYYVADEEATEEMPC 375
                 45689*******************9999988888888877666 PP

  == domain 7    score: 12.9 bits;  conditional E-value: 1.2e-05
   PF07699.8   6 kgnkkCepCprGtYkneegqkkCi 29 
                 ++n +C+ C    Y+++eg+++Ci
  MMETSP0890-20130614|2972_1 384 SSNMECSSCVPSEYQPYEGKTECI 407
                 6778*******************8 PP

>> PF07562.9  Nine Cysteines Domain of family 3 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.3     6e+03       8      14 ..     117     123 ..     115     126 .. 0.52
   2 ?    2.3   1.0     0.027   1.2e+02      27      42 ..     167     183 ..     151     200 .. 0.65
   3 ?    2.0   0.0     0.033   1.5e+02      28      41 ..     192     205 ..     191     208 .. 0.81
   4 !   11.9   0.2   2.7e-05      0.13      27      51 ..     218     242 ..     218     245 .. 0.91
   5 ?   -1.2   0.0      0.33   1.5e+03      28      51 ..     253     276 ..     253     279 .. 0.75
   6 !    8.5   0.6   0.00031       1.4      27      47 ..     286     306 ..     270     313 .. 0.66
   7 !    9.4   0.4   0.00017      0.76      27      46 ..     337     356 ..     320     365 .. 0.50
   8 !   10.4   0.5   8.2e-05      0.38       3      51 ..     335     378 ..     333     384 .. 0.78
   9 !    5.0   1.0    0.0039        18      30      51 ..     374     395 ..     370     408 .] 0.55

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.3
   PF07562.9   8 pCkpGqr 14 
                 pC  Gq+
  MMETSP0890-20130614|2972_1 117 PCGSGQW 123
                 4555544 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.027
   PF07562.9  27 dCvpCpegeisnet.de 42 
                 +C +Cp+g ++  t d 
  MMETSP0890-20130614|2972_1 167 SCSSCPAGRYLPFTiDR 183
                 68888888887655554 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.033
   PF07562.9  28 CvpCpegeisnetd 41 
                 C++Cp g +++ +d
  MMETSP0890-20130614|2972_1 192 CLECPVGRYLSDDD 205
                 ********999665 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 2.7e-05
   PF07562.9  27 dCvpCpegeisnetdettCkkCpee 51 
                 dC  Cp g + +et++ +C+ C  +
  MMETSP0890-20130614|2972_1 218 DCAACPSGRYGHETGMAECTLCIPG 242
                 7*********************766 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 0.33
   PF07562.9  28 CvpCpegeisnetdettCkkCpee 51 
                 C+  ++g+++ ++++t+  +Cp +
  MMETSP0890-20130614|2972_1 253 CTTAQAGHFVANEEATEELPCPAG 276
                 777778888888888888888876 PP

  == domain 6    score: 8.5 bits;  conditional E-value: 0.00031
   PF07562.9  27 dCvpCpegeisnetdettCkk 47 
                 +C +C+ g+++ e+++t+C  
  MMETSP0890-20130614|2972_1 286 ECSSCDPGSYQPEEGKTSCLV 306
                 577777787777777777765 PP

  == domain 7    score: 9.4 bits;  conditional E-value: 0.00017
   PF07562.9  27 dCvpCpegeisnetdettCk 46 
                 +C +C+ g +++++ ++ C 
  MMETSP0890-20130614|2972_1 337 TCSSCQPGFYQTNESQVACI 356
                 45555555555555555555 PP

  == domain 8    score: 10.4 bits;  conditional E-value: 8.2e-05
   PF07562.9   3 SvCsepCkpGqrkkvqkgkpkCCfdCvpCpegeisnetdettCkkCpee 51 
                 Sv  ++C+pG++++  +++      C+  ++g ++  +++t+ ++Cp +
  MMETSP0890-20130614|2972_1 335 SVTCSSCQPGFYQTN-ESQV----ACIAAQAGYYVADEEATEEMPCPPG 378
                 777778999999977.5666....5888888888888888888888876 PP

  == domain 9    score: 5.0 bits;  conditional E-value: 0.0039
   PF07562.9  30 pCpegeisnetdettCkkCpee 51 
                 pCp g +   + +++C +C  +
  MMETSP0890-20130614|2972_1 374 PCPPGRFAAGSSNMECSSCVPS 395
                 5555555555555555555433 PP

>> PF00020.13  TNFR/NGFR cysteine-rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.7     0.075   3.4e+02      17      26 ..     167     176 ..     164     178 .. 0.83
   2 ?    1.3   0.0     0.074   3.4e+02      17      28 ..     191     202 ..     182     205 .. 0.70
   3 ?    6.0   0.1    0.0024        11       1      26 [.     222     244 ..     222     247 .. 0.82
   4 ?    4.3   1.0    0.0081        37      17      26 ..     286     295 ..     273     304 .. 0.69
   5 ?    8.2   0.5    0.0005       2.3       1      29 [.     324     349 ..     324     350 .. 0.73
   6 ?    3.6   0.1     0.014        62       1      19 [.     375     393 ..     375     406 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.075
                 EEE-B-TTCE CS
  PF00020.13  17 sCskCepgtv 26 
                 sCs+C+ g +
  MMETSP0890-20130614|2972_1 167 SCSSCPAGRY 176
                 79***99977 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.074
                 EEE-B-TTCEEE CS
  PF00020.13  17 sCskCepgtvlv 28 
                 sC +C+ g +l+
  MMETSP0890-20130614|2972_1 191 SCLECPVGRYLS 202
                 578888887765 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0024
                 C-TTEEEESSCSEEEEEEE-B-TTCE CS
  PF00020.13   1 CeegtYtdsknhrqClsCskCepgtv 26 
                 C+ g Y ++++  +   C++C pg++
  MMETSP0890-20130614|2972_1 222 CPSGRYGHETGMAE---CTLCIPGSF 244
                 9*******999644...599988875 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0081
                 EEE-B-TTCE CS
  PF00020.13  17 sCskCepgtv 26 
                 +Cs+C+pg++
  MMETSP0890-20130614|2972_1 286 ECSSCDPGSY 295
                 4899999987 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.0005
                 C-TTEEEESSCS.EEEEEEE-B-TTCEEEB CS
  PF00020.13   1 CeegtYtdsknh.rqClsCskCepgtvlvs 29 
                 C++g + +  +  +  + Cs+C+pg++ ++
  MMETSP0890-20130614|2972_1 324 CPPGRFAA--GSsS--VTCSSCQPGFYQTN 349
                 77777777..3214..679*******9875 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.014
                 C-TTEEEESSCSEEEEEEE CS
  PF00020.13   1 CeegtYtdsknhrqClsCs 19 
                 C++g + + + +++C sC 
  MMETSP0890-20130614|2972_1 375 CPPGRFAAGSSNMECSSCV 393
                 8888888864447786663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:01.02
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|2975_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-17   62.3  12.1    3.1e-09   36.1   0.1    4.4  4  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0036   17.7   0.2        1.1    9.8   0.0    2.2  2  PF13513.1  HEAT-like repeat
     0.0043   14.9   0.0      0.011   13.6   0.0    1.6  1  PF05804.7  Kinesin-associated protein (KAP)
  ------ inclusion threshold ------
       0.02   15.0   0.2      0.045   13.9   0.1    1.7  1  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.6     2e+03      35      40 ..       1       6 [.       1       7 [. 0.86
   2 !   36.1   0.1   9.2e-13   3.1e-09       2      40 ..       9      47 ..       8      48 .. 0.95
   3 !   21.7   1.1   3.2e-08   0.00011       1      40 [.      50      87 ..      50      88 .. 0.93
   4 !    8.2   0.0   0.00057         2       1      16 [.      89     104 .]      89     104 .] 0.95

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.6
                HHHHHH CS
  PF00514.18 35 ALsNLa 40
                AL+NL+
  MMETSP0890-20130614|2975_1  1 ALCNLS 6 
                899*98 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 9.2e-13
                HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                  n+ a+  aGa+ppLv LL+sg  + +e Aa++L+NLa
  MMETSP0890-20130614|2975_1  9 ANNRVAISGAGAIPPLVTLLTSGTVGAKEKAAGTLGNLA 47
                67999*********************************9 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 3.2e-08
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                +++n   + eaGa+p Lv+LL+     ++  Aa+AL+NLa
  MMETSP0890-20130614|2975_1 50 NDKNQVSIAEAGAIPSLVNLLT--CGTTLLSAAGALRNLA 87
                789999****************..7799***********8 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.00057
                 CHHHHHHHHHCHHHHH CS
  PF00514.18   1 spenkqavieaGavpp 16 
                 +++nk ++ eaGa+pp
  MMETSP0890-20130614|2975_1  89 NDKNKVTIAEAGAIPP 104
                 799************8 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00032       1.1      29      55 .]      20      46 ..       5      46 .. 0.86
   2 !    6.2   0.1    0.0044        15      27      55 .]      60      86 ..      47      86 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00032
   PF13513.1 29 llpaLlelLeddddeVReaAawALgrl 55
                ++p+L+ lL++     +e Aa++Lg+l
  MMETSP0890-20130614|2975_1 20 AIPPLVTLLTSGTVGAKEKAAGTLGNL 46
                6888999996666688*********97 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0044
   PF13513.1 27 pellpaLlelLeddddeVReaAawALgrl 55
                  ++p L++lL   +  +  +Aa+AL +l
  MMETSP0890-20130614|2975_1 60 AGAIPSLVNLL--TCGTTLLSAAGALRNL 86
                5689*******..9************987 PP

>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.3e-06     0.011     353     449 ..       2      98 ..       1     103 [. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.3e-06
   PF05804.7 353 llnlsfdtklrrkmvkaGllPklvslldddk..kkgialkvlyhls.lddkvksmfaytdcikllmkalleslnekvdleliallinlalnkrnaqlive 449
                 l nlsf++++r  +  aG +P lv+ll + +   k+ a   l  l+  +dk +  +a + +i+ l++ l ++ ++ +       l nla+n +n   i e
  MMETSP0890-20130614|2975_1   2 LCNLSFNANNRVAISGAGAIPPLVTLLTSGTvgAKEKAAGTLGNLAvKNDKNQVSIAEAGAIPSLVNLL-TCGTTLLSA--AGALRNLAVNDKNKVTIAE 98 
                 679999999999999999999999999987633345555566555416888899999999999988754.444444444..4566788888888766654 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.3e-05     0.045      32      72 ..      20      71 ..       8      99 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
   PF13646.1 32 alpaLlelLkdsdpevRraAaeaLgkl...........gdpealpaLlklld 72
                a+p+L+ lL++     +++Aa  Lg+l           ++  a+p L+ ll+
  MMETSP0890-20130614|2975_1 20 AIPPLVTLLTSGTVGAKEKAAGTLGNLavkndknqvsiAEAGAIPSLVNLLT 71
                5666666666666666666666666663333322222224445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 336.79
//
Query:       MMETSP0890-20130614|2969_1  [L=1017]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-09   36.0 237.4     0.0012   18.0  11.7   13.0 11  PF04886.7 PT repeat
  ------ inclusion threshold ------
          2    6.0  39.5        2.9    5.5  27.4    1.3  1  PF04147.7 Nop14-like family


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0  11.7   1.7e-07    0.0012       2      31 ..       6      35 ..       1      36 [. 0.56
   2 !   15.3  17.1   1.2e-06    0.0082       2      31 ..      22      51 ..      14      64 .. 0.57
   3 ?   -0.0  16.8     0.072   4.9e+02       1      36 []      49      84 ..      49     100 .. 0.79
   4 !    7.4  13.8   0.00035       2.4       9      32 ..     268     291 ..     257     295 .. 0.45
   5 ?    1.1  17.7     0.033   2.2e+02       1      28 [.     288     315 ..     284     328 .. 0.50
   6 ?   -3.3  19.0      0.74   5.1e+03       1      31 [.     321     352 ..     315     360 .. 0.69
   7 ?  -16.7  32.3         2   1.4e+04       2      35 ..     388     421 ..     346     422 .. 0.79
   8 !   15.2  14.9   1.3e-06    0.0087       2      35 ..     408     441 ..     407     446 .. 0.74
   9 !    8.8   9.1   0.00013      0.86       3      36 .]     447     481 ..     444     481 .. 0.92
  10 !    6.7  11.9   0.00057       3.9       6      34 ..     475     503 ..     471     505 .. 0.69
  11 ?   -1.7   0.7      0.25   1.7e+03      10      18 ..     639     647 ..     638     650 .. 0.37

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.7e-07
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt 31
                pTa+Pt+ PT  PT  Pta PT++Pta Pt
  MMETSP0890-20130614|2969_1  6 PTAAPTSIPTLSPTSVPTASPTGEPTACPT 35
                555555555555555555555555555555 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.2e-06
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt 31
                pTa Pt++PT  PTg Pt+ PT+ P+ qP+
  MMETSP0890-20130614|2969_1 22 PTASPTGEPTACPTGVPTSDPTALPSIQPS 51
                455555555555555555555555555555 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.072
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36
                qp++ Pt++PT  PT  Pt  P++ Pt  P++ Pt+
  MMETSP0890-20130614|2969_1 49 QPSSIPTARPTSFPTFYPTTMPSSVPTMIPSSIPTP 84
                677777777777777777777777777777777764 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.00035
   PF04886.7   9 qPTvqPTgqPtaqPTdqPtaqPtd 32 
                  PT+ PT  Pta P+ +Pt qPt+
  MMETSP0890-20130614|2969_1 268 SPTGTPTSVPTASPSLSPTTQPTS 291
                 244444444444444444444444 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.033
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPta 28 
                 qpT+ Pt  PT  PT  Pt  PT++Pt 
  MMETSP0890-20130614|2969_1 288 QPTSLPTLLPTSVPTILPTVTPTSEPTT 315
                 4444444444444444444444444443 PP

  == domain 6    score: -3.3 bits;  conditional E-value: 0.74
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdq.PtaqPt 31 
                 qpT  P++ PT  PT  Pt++PT + P+  Pt
  MMETSP0890-20130614|2969_1 321 QPTLLPSSLPTACPTVVPTSEPTTPaPSPVPT 352
                 67777777777777777777776644777775 PP

  == domain 7    score: -16.7 bits;  conditional E-value: 2
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pTa Pt+ PT  PT  P++ P++ P+aqP++ P+
  MMETSP0890-20130614|2969_1 388 PTATPTALPTIDPTIVPSSCPSSIPSAQPSQTPS 421
                 6777777777777777777777777777777775 PP

  == domain 8    score: 15.2 bits;  conditional E-value: 1.3e-06
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 p++ P++qP++ P+ +PtaqP++ P+ +Pt+ P+
  MMETSP0890-20130614|2969_1 408 PSSIPSAQPSQTPSVPPTAQPSALPSTEPTSSPS 441
                 6777788888888888888888888888887775 PP

  == domain 9    score: 8.8 bits;  conditional E-value: 0.00013
   PF04886.7   3 TaqPteqP.TvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 +++Pt++P T+ P+ qP+a+P+  P+  P++ P++
  MMETSP0890-20130614|2969_1 447 SSRPTSHPsTGSPSQQPSAGPSLLPSIIPSSSPSE 481
                 789*****7789*******************9985 PP

  == domain 10    score: 6.7 bits;  conditional E-value: 0.00057
   PF04886.7   6 PteqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 P++ P++ P++ P+  P++ Pt qP++a+
  MMETSP0890-20130614|2969_1 475 PSSSPSETPSERPSETPSADPTPQPSTAE 503
                 77777777777777777777777777765 PP

  == domain 11    score: -1.7 bits;  conditional E-value: 0.25
   PF04886.7  10 PTvqPTgqP 18 
                 P++ P++ P
  MMETSP0890-20130614|2969_1 639 PSTSPSETP 647
                 233333322 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  27.4   0.00042       2.9     293     382 ..     919    1009 ..     842    1017 .] 0.51

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00042
   PF04147.7  293 rRmrgeeeddeeeedse.............kesaddlddefe...edddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddee 382 
                  rR +   e++++e+++              +          +   eddd + +++++e++e++e+    e+ed+e+ddd+ ee+ee+ +e eeee+eed+++ +e+
  MMETSP0890-20130614|2969_1  919 RRNERATEESDSEDEEAkesterpktgprrM----------VwggEDDD-EEDEDTHETDETQEK---SESEDDEDDDDETEETEEEDEE-EEEEEEEDDDDTEES 1009
                  4444433333333333211133333444331..........03321111.111111111111111...1222222222222211111111.111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1161  (0.0849181); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                       159  (0.0116296); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.72u 0.40s 00:00:03.12 Elapsed: 00:00:02.12
# Mc/sec: 1149.57
//
Query:       MMETSP0890-20130614|2978_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-52  177.1   0.1    3.5e-52  176.9   0.0    1.0  1  PF02900.13 Catalytic LigB subunit of aromatic ring-opening dioxygenase


Domain annotation for each model (and alignments):
>> PF02900.13  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.0   2.6e-56   3.5e-52       2     249 ..      16     249 ..      15     263 .. 0.90

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 2.6e-56
  PF02900.13   2 alflSHgplllaaedksadekrekvfkgfasararlaeakpdvivvvspdwetgffedvtpafcvglaetpegihdfggfpdslyrlkyslpgapelAeaiaellraagidlavsarrglDhGaavpLslmyp.dadipvvpvsinsvaeplptarrcyelGravgkaieslderVlviGSGglsHnlrvpelakadelineefdrqfldalksg.....dletLcaiekkaleaaaghs.eeelkpwvvalGal 249
                  lf SHg  +l + + ++  +r ++    as +++l+e kp++i+v+s++we+    d      v+++++pe + d++gfpd+ y+ ky++pg+p+lA+ i++l++++gid + +a+rglDhG++vpL+l +p + dipvv vs+++    ++++++ + +G+a+ +++    +++l+i+SG++ Hn+r++++ + +++   efd  + +++ +      +l++L+++e   +ea+++h+ ee++ p++va +a 
  MMETSP0890-20130614|2978_1  16 ILFASHGGGPLPLLNRDEA-TRTHL----ASLQNELEE-KPKAIIVISAHWEA----DPV---RVSASAQPELLFDYYGFPDESYTYKYPVPGSPKLAATIVDLIQNQGIDATLDAERGLDHGVFVPLMLAFPhNTDIPVVAVSLHA----SLDPQKNALIGKALNPLR---AQGYLIIASGMTFHNMRAFNFTATKATHGLEFDAALRQLILHSesasvRLQKLLKWES-LPEARFAHPrEEHFIPLIVAVAAD 249
                 6899**9999877774443.34544....555777765.**************....444...69**********************************************999********************88***********....******************...**********************98889***********9988445667*********6.89******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 805.52
//
Query:       MMETSP0890-20130614|2979_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.2   0.1        6.9    6.7   0.0    2.5  2  PF13405.1 EF-hand domain


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0005       6.9      13      27 ..      41      55 ..      32      62 .. 0.85
   2 ?    2.7   0.1    0.0097   1.3e+02       3      15 ..      85      97 ..      83      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0005
                ----B---HHHHHHH CS
   PF13405.1 13 gdGkidaeELrdaLr 27
                 +G i+++E+++aL+
  MMETSP0890-20130614|2979_1 41 STGVITKDEVVNALQ 55
                58************8 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0097
                H---GCC------ CS
   PF13405.1  3 reaFklfDkdgdG 15
                ++aF+l+D  g++
  MMETSP0890-20130614|2979_1 85 KYAFDLMDGSGNN 97
                689*****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 737.06
//
Query:       MMETSP0890-20130614|2974_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-61  204.8   0.0    1.1e-60  204.3   0.0    1.1  1  PF01591.13 6-phosphofructo-2-kinase
    2.9e-28   98.8   0.0    2.5e-27   95.8   0.0    2.1  2  PF00300.17 Histidine phosphatase superfamily (branch 1)
    2.2e-08   33.9   0.0    5.5e-08   32.7   0.0    1.6  2  PF13671.1  AAA domain
    1.7e-06   28.6   0.4    7.6e-06   26.5   0.0    2.3  2  PF13207.1  AAA domain
    0.00076   18.5   0.0     0.0015   17.5   0.0    1.4  1  PF06414.7  Zeta toxin
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.017   14.1   0.0    1.3  1  PF03668.10 P-loop ATPase protein family
       0.06   12.4   0.0       0.11   11.5   0.0    1.4  1  PF08433.5  Chromatin associated protein KTI12
       0.11   12.6   0.0       0.41   10.8   0.0    2.0  1  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.0   6.5e-64   1.1e-60      11     221 ..      65     277 ..      58     279 .. 0.95

  Alignments for each domain:
  == domain 1    score: 204.3 bits;  conditional E-value: 6.5e-64
  PF01591.13  11 nsklvivlvGLpargKtyiskkltrylk.wlgvrtkvFnvgkyrreavkalsdaeffrpdneealklreklalaalkdllkylne.eegqvaifDAtNttrerRklilefveennlkvlflesvcsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyepld.deedeelsyIkvidvgkslvvnnvqgylqsrivyyllNihl 221
                 + klviv+vGLpargKt+i++kl ryl+ + +++ +vFn+++yrr++  a+++a+ f+p ne + ++r+k+  aa++dl++++++ ++g vai D t +t e+Rk+ l+++   ++kv+++es+c+++e+i++Ni+   l+  DY++ + +e+i+df +R+++ye++y+ ld +  ++++s+Ik+++ + ++++nn++gyl sriv ++  +h+
  MMETSP0890-20130614|2974_1  65 SDKLVIVMVGLPARGKTFIARKLLRYLSfFHAINVRVFNISDYRRRMHGAYHKADWFDPANEAGSEARKKCSDAAMDDLVAWVASgNDGRVAILDGTHSTLEKRKYTLKRLAPLECKVIMIESICDENEVIEQNIASTGLKGTDYAGLPVDESIADFRERVAHYEATYQTLDeNGVESSHSWIKIVNFK-RFIINNIRGYLPSRIVQFVSHLHT 277
                 4699************************67899*************************************************987368************************************************************************************677899********985.7999**************987776 PP

>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.28   4.9e+02     117     135 ..     213     231 ..     165     250 .. 0.75
   2 !   95.8   0.0   1.4e-30   2.5e-27       2     157 ..     282     463 ..     281     464 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.28
                 TSS.CHHHHHHHHHHHHHH CS
  PF00300.17 117 pegesladvyeRvapflee 135
                 p +es ad++eRva++  +
  MMETSP0890-20130614|2974_1 213 PVDESIADFRERVAHYEAT 231
                 4467889999998877544 PP

  == domain 2    score: 95.8 bits;  conditional E-value: 1.4e-30
                 EEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTHHHH.............TTHCESEEEEESSHHHHHHHHHHCC..CCE.................EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHHH CS
  PF00300.17   2 lylvRHGeselnkegrlqgwsdvpLtekGreqarelgkkLkr.............adlqidavytSplkRaiqTaeille..eld.................ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelieakdkgenvlivsHggvlra 157
                 +yl+RHG+se+n +g++ g+s   L+ +G + ar+l++  ++             +++ + + +tS+++R+++Ta++l+     +                 ++ +  p+L e+ +g+++g+++ae++e +pee+++++++k  +r+p+ges+ dv+ R+ p+l e+    ++ e +li++H+g+lr 
  MMETSP0890-20130614|2974_1 282 FYLCRHGQSEYNVKGKIGGDSG--LSGEGDKFARALADFADKniiidhdglfgpkSNIVPVRLWTSTMRRTRETAKYLRHdkI-HiayhgddvdgrsqdwiqLRPRAWPNLDELFAGVCDGMTYAEIEELFPEEFARRQKNKLAYRYPRGESYIDVIHRLDPILLEME---RHREPLLIIAHQGILRL 463
                 69********************..*************6655599999999999999999999***************888650.355666666677778888999999************************************************************...599999********996 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.2e-11   5.5e-08       1     139 [.      69     224 ..      69     230 .. 0.73
   2 ?   -3.3   0.0         4   6.8e+03      24      56 ..     353     386 ..     345     396 .. 0.66

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 3.2e-11
   PF13671.1   1 lvllvGlpGsGKstlaerllkklg......yvrlsqdtlrkrlfgtdqqskt......dytrvlkrlyq.ilnklarkal..sagrsvivdatnlsreerarfvklakrlgvpvrivylevpe.etlreRlakRerng.ddrsevpeealdrmlar 139
                 ++++vGlp+ GK++ a++ll+ l         + +  ++r+r+ g  ++           ++++k++ + ++ +l+++++   +gr +i+d t+ + e+r+  +k +  l+++v ++   ++e e++++++a  + +g d++  + +e ++++++r
  MMETSP0890-20130614|2974_1  69 VIVMVGLPARGKTFIARKLLRYLSffhainVRVFNISDYRRRMHGAYHKADWfdpaneAGSEARKKCSDaAMDDLVAWVAsgNDGRVAILDGTHSTLEKRKYTLKRLAPLECKVIMIESICDEnEVIEQNIASTGLKGtDYAGLPVDESIADFRER 224
                 89*********************977766333356667*******4444333222222234566665553677777777733456779*************99999999*************9788999999888887333444555666666655 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4
   PF13671.1  24 gyvrlsqdtlrkrlfgtdqq.sktdytrvlkrly 56 
                 ++  l+ d ++ +  g+d + + +d ++++ r++
  MMETSP0890-20130614|2974_1 353 TAKYLRHDKIHIAYHGDDVDgRSQDWIQLRPRAW 386
                 4667888888888888777743344566666665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.5e-09   7.6e-06       1      80 [.      69     163 ..      69     238 .. 0.69
   2 ?   -0.5   0.1       1.1   1.9e+03      37      37 ..     411     411 ..     309     506 .. 0.63

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 4.5e-09
                 EE--B--TT---HHHHHHHHHHS......TEEEEEGGGB-.......-GGGS-.B-----B--.SSGGGB-HHHHHHHH........H..HHHHHHTTS CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl......glpvlslddll.......reeglk.elddgeres.kdadadllaaildglaa....kkdtlswvidgale 80 
                 vi+ +G p+ GK+++a++L ++l      +++v++++d++       ++ ++  +      e+  +a ++  +a +d+l a      d+++ ++dg+++
  MMETSP0890-20130614|2974_1  69 VIVMVGLPARGKTFIARKLLRYLsffhaiNVRVFNISDYRrrmhgayHKADWFdPAN----EAgSEARKKCSDAAMDDLVAwvasGNDGRVAILDGTHS 163
                 7999******************98888888999*****5356666664444442222....22345555555555665544333334777777777444 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.1
                 G CS
   PF13207.1  37 e 37 
                 e
  MMETSP0890-20130614|2974_1 411 E 411
                 1 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     9e-07    0.0015      10     116 ..      61     175 ..      54     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9e-07
   PF06414.7  10 vpeqekpkavllgGqpGAGKtslaellleela...agnivridaDelrky.hpayrelek.kdpkeaseltqkdas.elveklidral..ekgyniilegtlrspdkarkiarkl 116
                 + + + + +++++G p+ GKt +a++ll+ l+   a n+ +++  ++r++ h ay+++   +  +ea +  +k++s   ++ l+++++  + g+  il+gt ++ +k + + ++l
  MMETSP0890-20130614|2974_1  61 YATPSDKLVIVMVGLPARGKTFIARKLLRYLSffhAINVRVFNISDYRRRmHGAYHKADWfDPANEAGSEARKKCSdAAMDDLVAWVAsgNDGRVAILDGTHSTLEKRKYTLKRL 175
                 55778999************************99888888888888876526777775544355566666666654144566666666223466778888888888777666666 PP

>> PF03668.10  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.9e-06     0.017       4     132 ..      70     202 ..      67     233 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.9e-06
  PF03668.10   4 vivsGlsGaGks.valraledlGyyvvdnlPlsllpklvdllkeansreskvavvldvrnre...esaelleqaeellekaitprilfleadddtlvrryedtrrshPlsakdlslegiakerelleplrara 132
                 +++ Gl   Gk+ +a + l  l ++ + n+ +  +++  + ++ a ++      + +  +      s+  ++ +   + +    r+  l+  ++tl +r    +r+ Pl+ k + +e+i  e+e++e+ +a +
  MMETSP0890-20130614|2974_1  70 IVMVGLPARGKTfIARKLLRYLSFFHAINVRVFNISDYRRRMHGAYHKADWFDPANEAGSEArkkCSDAAMDDLVAWVASGNDGRVAILDGTHSTLEKRKYTLKRLAPLECKVIMIESICDENEVIEQNIAST 202
                 4556777777763455556677777777777777777777777555554443333332222200022233333333444455679****************************************99876655 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.3e-05      0.11       4      39 ..      70     106 ..      68     161 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.3e-05
   PF08433.5   4 vvltGlPssGKstvakeLakalee.egrsvvvisdes 39 
                 +v+ GlP+ GK+ +a++L ++l+  + ++v v +  +
  MMETSP0890-20130614|2974_1  70 IVMVGLPARGKTFIARKLLRYLSFfHAINVRVFNISD 106
                 899******************9877555555544333 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00024      0.41       1      92 [.      70     172 ..      70     201 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00024
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.........gdvlrdlakengleeevddk..idtkeskeldedkldelldkleeneselaegenviidghlaeleledlkd 92 
                 I+ +G p+ GKt +a++L + l         + +++d+   ++  ++  d    +++   e++++  d+++d l ++ +  ++g++ i+dg+++ le++++  
  MMETSP0890-20130614|2974_1  70 IVMVGLPARGKTFIARKLLRYLsffhainvrVFNISDYRRRMHGAYHKADWfdPANEAGSEARKKCSDAAMDDLVAWVASGNDGRVAILDGTHSTLEKRKYTL 172
                 67789*************999988888877766666665555555555444443455555555555566666666666677788888***9999998887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.85
# Mc/sec: 1460.37
//
Query:       MMETSP0890-20130614|2981_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.71
# Mc/sec: 475.90
//
Query:       MMETSP0890-20130614|2977_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-24   85.0   1.0    8.7e-24   83.5   0.7    1.9  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
       0.02   14.4   0.2       0.51    9.8   0.1    2.7  2  PF02671.16 Paired amphipathic helix repeat
        1.3    8.9  11.0       0.53   10.1   1.4    3.3  3  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
        3.7    7.8  10.0        2.2    8.4   0.9    3.3  4  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.7   2.5e-27   8.7e-24       2     102 ..      42     137 ..      41     139 .. 0.93

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 2.5e-27
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkks 102
                 F++ l+++l+    +e+i+w+++g+++ + d+++fa ++ pk+F+h+nf+SF+R LnmY+Fhk+ ++ek+     k ++F h+ Fk++++ell++i+rk  
  MMETSP0890-20130614|2977_1  42 FVRTLFNLLKMC-DEEIIQWTDDGEAVTINDPTRFACEICPKFFRHRNFNSFTRILNMYQFHKIPNNEKN----VKKVKFIHPCFKRNHEELLHRIQRKGA 137
                 889999999864.469****************************************************98....889*********************965 PP

>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00015      0.51       4      23 ..      89     108 ..      87     131 .. 0.74
   2 ?    1.2   0.0     0.076   2.6e+02      22      43 ..     329     350 ..     315     351 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHHHH CS
  PF02671.16   4 YqeFLeiLhdyskeiisrte 23 
                 +++F +iL++y+ + i+ +e
  MMETSP0890-20130614|2977_1  89 FNSFTRILNMYQFHKIPNNE 108
                 789**********9999988 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.076
                 HHHHHHHHHHSSS-HHHHHH-- CS
  PF02671.16  22 telyqeVadLlgghpdLleeFn 43 
                 t++ q+ +d +   p+Ll  F 
  MMETSP0890-20130614|2977_1 329 TDMQQQAWDAFLQSPQLLAAFQ 350
                 56999*************9996 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.1   3.4e+02     131     156 ..       2      27 ..       1      30 [. 0.88
   2 ?    2.2   0.1     0.043   1.5e+02      84     131 ..     124     169 ..     107     192 .. 0.68
   3 ?   10.1   1.4   0.00015      0.53      49     121 ..     239     313 ..     230     370 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.1
   PF13094.1 131 nkhleslqgnlaqleglkealeraka 156
                 nk l++++ + aql+++ e+++++++
  MMETSP0890-20130614|2977_1   2 NKLLKNMEFSSAQLRKAEEEITKKRK 27 
                 678999**************999876 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.043
   PF13094.1  84 nlhpvlqelesevleenalaekedlklseknleptldeellellkqln 131
                 n +++l++ +++ +++ ++++ e+ k+++k +e ++ +e ++l+  l+
  MMETSP0890-20130614|2977_1 124 NHEELLHRIQRKGANK-ISSSIEN-KDTKKAEEDNIAPENKKLKLDLA 169
                 4456666666666666.3333233.56888888888888777776665 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00015
   PF13094.1  49 eirreeaelekdeekleeLeknakalererkeesknlhpvlqelesevleenalaekedlklseknleptl..de 121
                 e++re+  l+k+  +l+ ++ +   l++++ ++s+ ++ ++ +l s++l++ +++ ++++  sek ++  l  d+
  MMETSP0890-20130614|2977_1 239 ELERETRRLKKENSRLKGMQGEMAGLRAQLDTQSEMIRNLQLQLGSPMLPSFVDSTSQNFAISEKMTAALLeeDN 313
                 8999999999*****************************************999999996666665555554333 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.1   7.3e+03      39      47 ..      17      25 ..       5      55 .. 0.47
   2 ?    3.9   0.0     0.017        59      32      59 ..     145     172 ..     137     194 .. 0.84
   3 ?    8.4   0.9   0.00066       2.2      19      65 ..     236     278 ..     228     282 .. 0.76
   4 ?   -2.9   0.1       2.3   7.7e+03      29      38 ..     308     317 ..     303     341 .. 0.49

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.1
                HHHHHHHHH CS
   PF06005.7 39 eeneeLeee 47
                +++ee+ ++
  MMETSP0890-20130614|2977_1 17 KAEEEITKK 25
                222222222 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHH---T CS
   PF06005.7  32 eeneqlkeeneeLeeenkklkeereawq 59 
                 e++++ k e++++  enkklk + ++++
  MMETSP0890-20130614|2977_1 145 ENKDTKKAEEDNIAPENKKLKLDLAKIK 172
                 56677789999*********98877665 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00066
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHH CS
   PF06005.7  19 tialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerlral 65 
                 ++  L++e  +Lk+en+ lk     ++ e   l+ + + + e++r+l
  MMETSP0890-20130614|2977_1 236 RVVELERETRRLKKENSRLKG----MQGEMAGLRAQLDTQSEMIRNL 278
                 556788888888888777765....6778888889999999998876 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 2.3
                 HHHHHHHHHH CS
   PF06005.7  29 eLkeeneqlk 38 
                  L+e+n++++
  MMETSP0890-20130614|2977_1 308 LLEEDNKSNN 317
                 5555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1143  (0.0836015); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.83
# Mc/sec: 1215.50
//
Query:       MMETSP0890-20130614|2986_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-24   84.2   0.0    5.8e-24   84.0   0.0    1.0  1  PF01058.17 NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> PF01058.17  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   4.2e-28   5.8e-24       3     131 .]       7     116 ..       6     116 .. 0.93

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 4.2e-28
                 --HHHHT-TTTTHHHHHCT-EEEEETTT-S----HHHHT--.---EEEEE---...BB-HHHHHHHHHHCSSEEEE---TTT----TTSTT-TC-..H-TCCHT.---.EE-------HHHH---HHHH CS
  PF01058.17   3 GcsisllaleeslldlldlielryhetlladskeeeieaeekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeevgellevvpvdinipGCPphpeailetllal 131
                 +c ++++++  s +d+     +r+++ + a+++         + dv++v G++t+k+++al++++++++++++v ++G+CA  GG ++ +   sv   v+++++ vpvdi++pGCPp++ea+l++ll+l
  MMETSP0890-20130614|2986_1   7 CCAVEMMHSAASRYDM-----ERFGMVFRASPR---------QSDVMIVAGTLTNKMAPALRKVYDQMPEPRFVLSMGSCANGGGYYHYSY--SV---VRGVDRIVPVDIYVPGCPPTAEALLYGLLQL 116
                 49**************.....************.........9********************************************4433..33...469***********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.92
# Mc/sec: 343.83
//
Query:       MMETSP0890-20130614|2989_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   12.1   0.1       0.11   12.0   0.1    1.2  1  PF12354.3 Bacterial adhesion/invasion protein N terminal
       0.13   11.7   0.2        2.3    7.8   0.0    2.2  2  PF07671.6 Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF12354.3  Bacterial adhesion/invasion protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05      0.11      19      45 ..       5      32 ..       1      43 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
   PF12354.3 19 vslcigtslgtkvqa.asitqPtPIneI 45
                ++ c+++s+  k+q+ a++t   +I++I
  MMETSP0890-20130614|2989_1  5 ATACLNSSNDFKAQEvANVTWAFAIIDI 32
                456**********************998 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00033       2.3      26      36 ..      13      23 ..       6      23 .. 0.88
   2 ?    2.1   0.0      0.02   1.4e+02      17      32 ..      37      56 ..      34      57 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00033
   PF07671.6 26 erFNpQsIANt 36
                + F++Q++AN+
  MMETSP0890-20130614|2989_1 13 NDFKAQEVANV 23
                67********6 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.02
   PF07671.6 17 LlaAIr....rnaerFNpQs 32
                L++AI+         F+pQ+
  MMETSP0890-20130614|2989_1 37 LFNAIAdaalTKLDDFKPQE 56
                78888877777777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 182.88
//
Query:       MMETSP0890-20130614|2992_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 247.12
//
Query:       MMETSP0890-20130614|3004_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0035   17.1   3.2     0.0041   16.9   2.2    1.0  1  PF11559.3  Afadin- and alpha -actinin-Binding
  ------ inclusion threshold ------
       0.01   15.7   3.0      0.013   15.4   2.1    1.2  1  PF05103.8  DivIVA protein
      0.018   14.2   0.1      0.019   14.2   0.1    1.1  1  PF11157.3  Protein of unknown function (DUF2937)
      0.039   13.0   1.0      0.039   13.0   0.7    1.1  1  PF06022.6  Plasmodium variant antigen protein Cir/Yir/Bir
      0.043   13.8   0.9      0.049   13.6   0.6    1.0  1  PF00804.20 Syntaxin
      0.054   13.8   0.9      0.065   13.5   0.7    1.3  1  PF13600.1  N-terminal domain of unknown function (DUF4140)
      0.056   12.9   1.6      0.065   12.6   1.1    1.2  1  PF10224.4  Predicted coiled-coil protein (DUF2205)
      0.085   12.5   0.6      0.089   12.4   0.4    1.1  1  PF07889.7  Protein of unknown function (DUF1664)
      0.088   12.2   2.5      0.091   12.2   1.8    1.1  1  PF04156.9  IncA protein
       0.11   12.0   0.8       0.12   12.0   0.5    1.0  1  PF03233.8  Aphid transmission protein
       0.14   11.8   1.6       0.19   11.3   1.1    1.4  1  PF10198.4  Histone acetyltransferases subunit 3
       0.19   11.1   0.7       0.21   10.9   0.5    1.1  1  PF01956.11 Integral membrane protein DUF106
       0.28   10.5   2.2       0.25   10.7   1.0    1.3  1  PF04977.10 Septum formation initiator
       0.32   10.8   4.0       0.35   10.7   2.8    1.2  1  PF14193.1  Domain of unknown function (DUF4315)
       0.42   10.4   4.5        1.8    8.4   0.8    2.0  2  PF02212.13 Dynamin GTPase effector domain
       0.46   10.6   3.9       0.56   10.4   2.7    1.3  1  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.2   4.7e-06    0.0041      73     129 ..       4      60 ..       2      64 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.7e-06
   PF11559.3  73 skierlktqleqlerelallqekerqlekklktleqklknekeelqrlkniiqsikt 129
                 ++i ++ +++++ ++++a l e+ r+l++ lk+l++++ +++e++ +l   + + ++
  MMETSP0890-20130614|3004_1   4 KSIYKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDALKLTLEVVQDAK 60 
                 57889999***************************************9988877555 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   2.1   1.5e-05     0.013      30      92 ..       2      64 ..       1      66 [] 0.89

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.5e-05
   PF05103.8 30 vikdyeallkeneelkeeieeleekleeykeleeslkkslvvaqetaeevkanakkeaeliik 92
                vik + ++++e+++ k+++++l e+l+ +++  ++lk++  + qe a ++  +  + a+++++
  MMETSP0890-20130614|3004_1  2 VIKSIYKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDALKLTLEVVQDAKKLVE 64
                999999********************************9999999999888888777777665 PP

>> PF11157.3  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.2e-05     0.019      73     105 ..      13      45 ..       3      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.2e-05
   PF11157.3  73 vraraesmqalvaRyaaLesalaalaqaspfer 105
                 v+a+ +  ++l +R++aL+sal++l+++++ ++
  MMETSP0890-20130614|3004_1  13 VKANKKRCARLCERLRALQSALKELKNQNYATQ 45 
                 7899999**********************9987 PP

>> PF06022.6  Plasmodium variant antigen protein Cir/Yir/Bir
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   4.6e-05     0.039     154     199 ..       3      48 ..       1      66 [] 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.6e-05
   PF06022.6 154 fklLCnmyteldeekknckkylekaneFvkkYeeLnedsnitkdss 199
                  k+++++y+e++++kk c  + e      +  +eL++++  t++  
  MMETSP0890-20130614|3004_1   3 IKSIYKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDA 48 
                 799*********************************8776666554 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   5.7e-05     0.049       5      61 ..       6      62 ..       3      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.7e-05
  PF00804.20  5 ffeqveeIrgeiekisekveelkrlhsrilaspdpdkqtkeeleeltaeikklanki 61
                +++  ee++ + ++ + + e+l+ l+s+++  ++++ +t+e+  +lt e+ ++a+k+
  MMETSP0890-20130614|3004_1  6 IYKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDALKLTLEVVQDAKKL 62
                567789****************************999*************9999987 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   7.6e-05     0.065      63      98 ..      11      46 ..       3      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.6e-05
   PF13600.1 63 kdadaaseelaeleaelraledelarleaekealea 98
                ++++a++++ a+l ++lral+++l++l++++ a + 
  MMETSP0890-20130614|3004_1 11 EEVKANKKRCARLCERLRALQSALKELKNQNYATQE 46
                357999***********************9988765 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.1   7.6e-05     0.065      12      51 ..      14      53 ..       4      63 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.6e-05
   PF10224.4 12 klekeekqrlieqvleLqdsLedLseRveaVkeendKLes 51
                k++k   +rl e  ++Lq++L++L +   a +e+ +KL  
  MMETSP0890-20130614|3004_1 14 KANKKRCARLCERLRALQSALKELKNQNYATQEDALKLTL 53
                56677789*****************************975 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4    0.0001     0.089      49      98 ..       3      55 ..       1      66 [] 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0001
   PF07889.7 49 tkqlekvseavasakkh...Lsqridnlddkldeqkeiskeikeevteiredl 98
                 k + kv+e+v++ kk+   L +r+  l++ l+e k+    ++e+  ++  ++
  MMETSP0890-20130614|3004_1  3 IKSIYKVYEEVKANKKRcarLCERLRALQSALKELKNQNYATQEDALKLTLEV 55
                678999********99534488999999****999999999999987765544 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   0.00011     0.091     128     170 ..       9      51 ..       4      66 .] 0.69

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
   PF04156.9 128 leerlesleesikelakeirelreeisdlkeevqelrselerl 170
                 + e+++++++++++l++++r l++++++lk++    ++++ +l
  MMETSP0890-20130614|3004_1   9 VYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDALKL 51 
                 6678888888888888888888888888887777777776666 PP

>> PF03233.8  Aphid transmission protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00014      0.12      88     150 ..       2      62 ..       1      66 [] 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00014
   PF03233.8  88 vfkklkkifkeggedkekktklletLkeaqnrikkleeetkklaekivtekllkeevkdlder 150
                 v k++ k+++e+  +k++ ++l e L+  q+  k+l++++   +e+  + kl+ e v+d ++ 
  MMETSP0890-20130614|3004_1   2 VIKSIYKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQED--ALKLTLEVVQDAKKL 62 
                 67889999****************************9998777665..445666666666654 PP

>> PF10198.4  Histone acetyltransferases subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.1   0.00022      0.19      39      69 ..      23      53 ..       5      64 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00022
   PF10198.4 39 vaaelrelqaeLkevskvNearkkrLlelvk 69
                 +++lr lq+ Lke+++ N a +++ l+l+ 
  MMETSP0890-20130614|3004_1 23 LCERLRALQSALKELKNQNYATQEDALKLTL 53
                699*****************99998877765 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00024      0.21      36      79 ..       7      50 ..       2      63 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00024
  PF01956.11 36 llidkkmekykkrekeiqkrarelqkngdklklkklekrkeelk 79
                + +++++++ kkr +++ +r r+lq+  ++lk +  ++++  lk
  MMETSP0890-20130614|3004_1  7 YKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDALK 50
                5688999999****************988888888888887776 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   0.00029      0.25      18      57 ..       5      43 ..       2      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00029
  PF04977.10 18 alyqlkqeiaalqaelaklkaeneeLeaevkdLksdedyi 57
                ++y++ +e++a+++  a+l ++ ++L++ +k+Lk +++y 
  MMETSP0890-20130614|3004_1  5 SIYKVYEEVKANKKRCARLCERLRALQSALKELK-NQNYA 43
                789999***************************5.66664 PP

>> PF14193.1  Domain of unknown function (DUF4315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.8    0.0004      0.35       2      50 ..       5      53 ..       4      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0004
   PF14193.1  2 kiekieaeieKtkeKiaelqarlkeLekqktEaENleIvqiVRsldmsp 50
                +i k+ +e++ +k++ a l +rl++L+ + +E+ N ++     +l++++
  MMETSP0890-20130614|3004_1  5 SIYKVYEEVKANKKRCARLCERLRALQSALKELKNQNYATQEDALKLTL 53
                789********************************98866666665555 PP

>> PF02212.13  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8    0.0021       1.8      63      90 ..      11      38 ..       3      40 .. 0.79
   2 ?    4.1   0.1     0.044        38      66      92 .]      40      66 .]      38      66 .] 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0021
  PF02212.13 63 qEddevaekRkelkerlevLkqAlrild 90
                +E ++ +++ ++l erl++L++Al+ l+
  MMETSP0890-20130614|3004_1 11 EEVKANKKRCARLCERLRALQSALKELK 38
                566666777788999*********9997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.044
  PF02212.13 66 devaekRkelkerlevLkqAlrildel 92
                ++ a++ + lk +lev + A++ ++++
  MMETSP0890-20130614|3004_1 40 QNYATQEDALKLTLEVVQDAKKLVEKF 66
                5678888999************99876 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.7   0.00066      0.56      11      47 ..      18      54 ..       8      65 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00066
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF06005.7 11 skiqqAvdtialLqmeieeLkeeneqlkeeneeLeee 47
                ++ +++ ++ ++Lq  ++eLk++n++ +e   +L  e
  MMETSP0890-20130614|3004_1 18 KRCARLCERLRALQSALKELKNQNYATQEDALKLTLE 54
                5778899999*************99999655554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1324  (0.0968403); expected 273.4 (0.02)
Passed bias filter:                      992  (0.0725571); expected 273.4 (0.02)
Passed Vit filter:                       148  (0.010825); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.42u 0.48s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 197.70
//
Query:       MMETSP0890-20130614|3012_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.88
# Mc/sec: 708.01
//
Query:       MMETSP0890-20130614|3020_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-15   56.1   0.3      2e-08   33.6   0.1    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0061   16.6   0.0     0.0074   16.4   0.0    1.1  1  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.052   14.0   0.3        2.2    8.8   0.0    2.2  2  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   4.4e-12     2e-08      11      40 ..       1      30 [.       1      31 [. 0.97
   2 !   21.0   0.0   4.1e-08   0.00019       2      24 ..      33      55 ..      33      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 4.4e-12
                CHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18 11 aGavppLvqLLksgdeevqeeAawALsNLa 40
                aGa+ppLv+LL+sg    +e Aa+AL+NLa
  MMETSP0890-20130614|3020_1  1 AGAIPPLVNLLTSGTAVAKEKAAGALWNLA 30
                7****************************9 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 4.1e-08
                HHHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18  2 penkqavieaGavppLvqLLksg 24
                ++nk ++  aGa+ppLv+LL+sg
  MMETSP0890-20130614|3020_1 33 DKNKVTIAAAGAIPPLVNLLTSG 55
                57999***************985 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-06    0.0074      32      76 ..       3      57 ..       1      61 [. 0.79

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.6e-06
   PF13646.1 32 alpaLlelLkdsdpevRraAaeaLgkl..........gdpealpaLlkllddded 76
                a+p+L+ lL++  +  +++Aa aL +l          +   a+p+L+ ll++ +d
  MMETSP0890-20130614|3020_1  3 AIPPLVNLLTSGTAVAKEKAAGALWNLafidknkvtiAAAGAIPPLVNLLTSGTD 57
                89**********************9995554443333368899****99998655 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00048       2.2      29      52 ..       3      26 ..       1      45 [. 0.84
   2 ?    6.6   0.1    0.0024        11       6      40 ..      24      55 ..      23      61 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00048
   PF13513.1 29 llpaLlelLeddddeV.ReaAawAL 52
                ++p+L++lL++    V +e Aa+AL
  MMETSP0890-20130614|3020_1  3 AIPPLVNLLTSGT-AVaKEKAAGAL 26
                5788888886555.555******99 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0024
   PF13513.1  6 aAawaLGrlaggeprllepavpellpaLlelLedd 40
                +A+w L+   +   + +  a   ++p+L++lL++ 
  MMETSP0890-20130614|3020_1 24 GALWNLA---FIDKNKVTIAAAGAIPPLVNLLTSG 55
                6888885...8888888888888999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 235.83
//
Query:       MMETSP0890-20130614|3024_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-09   36.9   4.4    3.7e-09   36.2   2.5    1.8  2  PF06839.7  GRF zinc finger
  ------ inclusion threshold ------
      0.076   11.5   0.1      0.081   11.4   0.0    1.1  1  PF14033.1  Protein of unknown function (DUF4246)
      0.082   12.9   0.9       0.26   11.3   0.6    1.9  1  PF03107.11 C1 domain


Domain annotation for each model (and alignments):
>> PF06839.7  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   2.5   8.1e-13   3.7e-09       2      44 ..      53      89 ..      52      90 .. 0.93
   2 ?   -2.9   0.0       1.4   6.3e+03      34      38 ..     114     118 ..     107     124 .. 0.65

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 8.1e-13
   PF06839.7  2 lCpCgqlaviltvrktgpNkgRkFYkCpvgkekqCgFFqWede 44
                 C+Cg +a+ lt+   + N++R FY+C++     C+FF W+d+
  MMETSP0890-20130614|3024_1 53 HCKCGVPAEKLTSH-SERNPNRDFYTCNN-----CKFFLWADQ 89
                7************9.************86.....77******7 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.4
   PF06839.7  34 kqCgF 38 
                 + CgF
  MMETSP0890-20130614|3024_1 114 ETCGF 118
                 57998 PP

>> PF14033.1  Protein of unknown function (DUF4246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05     0.081     304     352 ..     122     171 ..       8     175 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.8e-05
   PF14033.1 304 krkailpepkefspeeeeeeeeeekevkL..qkefrekgLqvIvklasieL 352
                 ++++ l +pk+ +++ ++e e+e+++v+L  +  f++k+LqvIv + +ie+
  MMETSP0890-20130614|3024_1 122 ADEE-LRSPKKPHTDGPTELEQENDQVNLivSVGFQRKNLQVIVSVIQIEI 171
                 2222.2333222233556667777777774467899*************97 PP

>> PF03107.11  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   5.6e-05      0.26       7      25 ..      68      85 ..      68      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.6e-05
  PF03107.11  7 erktdgfyfYtCkkccftl 25
                er+ + + fYtC+ c+f l
  MMETSP0890-20130614|3024_1 68 ERNPNRD-FYTCNNCKFFL 85
                6888999.*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|3029_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-56  188.0   0.0    9.6e-56  187.5   0.0    1.2  1  PF04729.8 ASF1 like histone chaperone


Domain annotation for each model (and alignments):
>> PF04729.8  ASF1 like histone chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.0     7e-60   9.6e-56       1     153 [.       1     162 [.       1     163 [. 0.93

  Alignments for each domain:
  == domain 1    score: 187.5 bits;  conditional E-value: 7e-60
                 ---EEEEEEEESS-SEETTS-EEEEEEEEESS--SS-EEEEEEEE---S-GGG-EEEEEEEE-------EEEEEEE----GGGSSGGGG---EEEEEEEEESSEEEEEE-EEEEEEE----TTT--HH.........---GGGEEEEE-TTS---EE----- CS
   PF04729.8   1 mslvnvtnikvlnnpakfksplkfeitfealeklkedlewklvyvgsaesekkdqvLdsvllGPiekGvleFefevdpPdvekipkedvlgvtvvlvsakYkdqeFlrvgYyvnnayedeelrenppd.........vpildklvRkilaekprvtrfpikw 153
                 m+lv+vtn+  ++np++f++p++feitfe +++l+edlewkl+yvgsae++++dq+L +v++GP+++Gv +F+++++pP+ + ip++dv+gvtv+l++++Y+++eF+rvgYyvnn+  d++ ++              ++l+ +vR+ila+kprvtrf+i+w
  MMETSP0890-20130614|3029_1   1 MALVQVTNVVPMDNPTSFTNPFTFEITFESIQDLEEDLEWKLIYVGSAEDSRYDQLLVEVAVGPVPAGVSKFVLHANPPNPQLIPQNDVVGVTVILLCCSYRGREFVRVGYYVNNELPDRTNEDSSHLtgggdldltDIDLKYVVRTILADKPRVTRFNIDW 162
                 99*******************************************************************************************************************99887776554455555544567778******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:01.10
# Mc/sec: 374.70
//
Query:       MMETSP0890-20130614|3054_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-46  154.3   0.0    2.4e-16   58.8   0.0    4.0  4  PF13475.1  Domain of unknown function (DUF4116)
    0.00011   21.6   0.0        2.8    7.5   0.0    3.5  3  PF07892.6  Protein of unknown function (DUF1667)
      0.001   18.9   0.2        1.8    8.5   0.0    3.6  4  PF00249.26 Myb-like DNA-binding domain
     0.0015   18.2   0.0      0.073   12.8   0.0    2.4  2  PF08678.5  Rsbr N terminal
      0.004   16.9   0.0       0.81    9.5   0.0    2.7  2  PF01232.18 Mannitol dehydrogenase Rossmann domain
     0.0049   16.4   0.1        4.4    7.0   0.0    3.5  3  PF07012.7  Curlin associated repeat
     0.0095   15.7   0.0         53    3.7   0.0    3.8  4  PF12310.3  Transcription factor protein N terminal
  ------ inclusion threshold ------
      0.019   14.3   0.0        1.1    8.6   0.0    2.1  2  PF04312.8  Protein of unknown function (DUF460)
       0.04   14.1   0.2      0.069   13.3   0.1    1.3  1  PF14200.1  Ricin-type beta-trefoil lectin domain-like
      0.062   13.0   0.1        1.5    8.5   0.0    2.6  2  PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
      0.098   12.2   1.4       0.22   11.1   1.0    1.8  1  PF07926.7  TPR/MLP1/MLP2-like protein
       0.12   11.6   0.1        1.1    8.4   0.0    2.2  2  PF10628.4  Outer spore coat protein E (CotE)
       0.12   11.3   2.1        1.7    7.5   0.1    2.3  2  PF00244.15 14-3-3 protein
       0.17   11.5   0.8         22    4.7   0.0    3.5  4  PF05862.6  Helicobacter pylori IceA2 protein


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.056        55       3      12 ..       2      11 ..       1      13 [. 0.62
   2 !   58.8   0.0   2.5e-19   2.4e-16       1      49 []      12      60 ..      12      60 .. 0.98
   3 !   57.7   0.0   5.2e-19   5.1e-16       3      46 ..      39      82 ..      37      85 .. 0.95
   4 !   46.0   0.0   2.4e-15   2.4e-12       2      34 ..      88     120 ..      87     121 .] 0.97

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.056
   PF13475.1  3 Eivleavkkn 12
                Eivl+av+++
  MMETSP0890-20130614|3054_1  2 EIVLAAVTQD 11
                6666666665 PP

  == domain 2    score: 58.8 bits;  conditional E-value: 2.5e-19
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                D Eivl+a++++g alky+s eLkn+ eivl+Av q+g al+yas+ L+
  MMETSP0890-20130614|3054_1 12 DHEIVLAAITQYGRALKYASQELKNNHEIVLAAVTQYGRALEYASDKLK 60
                67********************************************997 PP

  == domain 3    score: 57.7 bits;  conditional E-value: 5.2e-19
   PF13475.1  3 EivleavkkngsalkylseeLknDkeivlkAvkqngsalsyase 46
                Eivl+av+++g al+y+s++Lkn+ eivl+Av qng+al+yas 
  MMETSP0890-20130614|3054_1 39 EIVLAAVTQYGRALEYASDKLKNNHEIVLAAVTQNGYALEYASQ 82
                9*****************************************95 PP

  == domain 4    score: 46.0 bits;  conditional E-value: 2.4e-15
   PF13475.1   2 rEivleavkkngsalkylseeLknDkeivlkAv 34 
                 rEivl+av++ g al+y+s++LknD+eivl+A+
  MMETSP0890-20130614|3054_1  88 REIVLAAVTQKGRALEYASDRLKNDREIVLAAI 120
                 9*******************************8 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0029       2.8       2      23 ..      25      46 ..      24      51 .. 0.88
   2 !    6.1   0.0    0.0081       7.9       2      29 ..      50      77 ..      49      81 .. 0.85
   3 ?    5.2   0.0     0.015        15       4      34 ..      77     107 ..      75     121 .] 0.76

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0029
   PF07892.6  2 rGeeYakkeltnpkriltstVk 23
                r  +Ya +el+n+  i+ + V 
  MMETSP0890-20130614|3054_1 25 RALKYASQELKNNHEIVLAAVT 46
                7789*************99986 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0081
   PF07892.6  2 rGeeYakkeltnpkriltstVkveggel 29
                r  eYa + l+n+  i+ + V  +g  l
  MMETSP0890-20130614|3054_1 50 RALEYASDKLKNNHEIVLAAVTQNGYAL 77
                789*****************99887665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.015
   PF07892.6   4 eeYakkeltnpkriltstVkveggelplvpV 34 
                  eYa + l+n + i+ + V  +g  l+  + 
  MMETSP0890-20130614|3054_1  77 LEYASQGLKNYREIVLAAVTQKGRALEYASD 107
                 5899999999999999999988888877764 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0018       1.8       5      20 ..       9      24 ..       7      34 .. 0.93
   2 ?    4.2   0.0      0.04        39       9      20 ..      38      49 ..      35      52 .. 0.92
   3 ?    1.3   0.0      0.33   3.2e+02       9      20 ..      63      74 ..      62      76 .. 0.93
   4 ?   -1.4   0.0       2.3   2.2e+03      10      20 ..      89      99 ..      88     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0018
                -HHHHHHHHHHHHHTT CS
  PF00249.26  5 TteEdellvdavkqlG 20
                T++++e+ + a++q+G
  MMETSP0890-20130614|3054_1  9 TQDDHEIVLAAITQYG 24
                99*************9 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.04
                HHHHHHHHHHTT CS
  PF00249.26  9 dellvdavkqlG 20
                +e+ + av+q+G
  MMETSP0890-20130614|3054_1 38 HEIVLAAVTQYG 49
                99*********9 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.33
                HHHHHHHHHHTT CS
  PF00249.26  9 dellvdavkqlG 20
                +e+ + av+q G
  MMETSP0890-20130614|3054_1 63 HEIVLAAVTQNG 74
                899*******98 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 2.3
                HHHHHHHHHTT CS
  PF00249.26 10 ellvdavkqlG 20
                e+ + av+q G
  MMETSP0890-20130614|3054_1 89 EIVLAAVTQKG 99
                67889***998 PP

>> PF08678.5  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.058        57      67      95 ..      20      48 ..       2      66 .. 0.77
   2 !   12.8   0.0   7.5e-05     0.073      67      99 ..      70     102 ..      53     116 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.058
   PF08678.5 67 ivqlGlpLklltkgLqvfrkvvyekmnde 95
                i q G  Lk++++ L+   ++v++++++ 
  MMETSP0890-20130614|3054_1 20 ITQYGRALKYASQELKNNHEIVLAAVTQY 48
                56889999999999999888888877665 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 7.5e-05
   PF08678.5  67 ivqlGlpLklltkgLqvfrkvvyekmndekvke 99 
                 + q+G  L+++++gL+ +r++v+++++++  + 
  MMETSP0890-20130614|3054_1  70 VTQNGYALEYASQGLKNYREIVLAAVTQKGRAL 102
                 5699********************999887554 PP

>> PF01232.18  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00083      0.81      85     135 ..       5      55 ..       1      86 [. 0.60
   2 ?    3.8   0.0     0.047        46      94     119 ..      89     117 ..      84     121 .] 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00083
                 HHHHTSTT--EEEE------..B-.T---B-TTSHHHHHHHH-TT-HHHHHHHH CS
  PF01232.18  85 ieamaePeirivsltvtekG..id.atgeletdlpaiaadlakpellvealkrr 135
                 ++a+++ + +iv  ++t+ G  +  a++el+++++ + a + +     +al+  
  MMETSP0890-20130614|3054_1   5 LAAVTQDDHEIVLAAITQYGraLKyASQELKNNHEIVLAAVTQYG---RALEYA 55 
                 556666666777777777777666677777777766666555543...333332 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.047
                 -EEEE------..B-.T---B-TTSHHHH CS
  PF01232.18  94 rivsltvtekG..id.atgeletdlpaia 119
                 +iv  +vt+kG  ++ a+++l++d + + 
  MMETSP0890-20130614|3054_1  89 EIVLAAVTQKGraLEyASDRLKNDREIVL 117
                 6999********99999999999987665 PP

>> PF07012.7  Curlin associated repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0045       4.4       6      23 ..      18      49 ..      17      52 .. 0.85
   2 ?    2.2   0.0      0.13   1.3e+02       6      13 ..      43      50 ..      42      56 .. 0.71
   3 ?    5.1   0.0     0.017        16       6      23 ..      68      99 ..      67     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0045
   PF07012.7  6 vditQyGdaN..............laliaqiG 23
                + itQyG a               la++ q+G
  MMETSP0890-20130614|3054_1 18 AAITQYGRALkyasqelknnheivLAAVTQYG 49
                67999999999999999999999999999988 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.13
   PF07012.7  6 vditQyGd 13
                + +tQyG 
  MMETSP0890-20130614|3054_1 43 AAVTQYGR 50
                46777775 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.017
   PF07012.7  6 vditQyGdaN..............laliaqiG 23
                + +tQ+G+a               la++ q G
  MMETSP0890-20130614|3054_1 68 AAVTQNGYALeyasqglknyreivLAAVTQKG 99
                67999999998888888888888888888887 PP

>> PF12310.3  Transcription factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.4   3.9e+02       4      24 ..      19      39 ..      16      45 .. 0.79
   2 ?    2.9   0.0     0.091        89       3      24 ..      43      64 ..      41      67 .. 0.85
   3 ?    3.4   0.0     0.064        62       3      22 ..      68      87 ..      66      91 .. 0.85
   4 ?    3.7   0.0     0.054        53       3      23 ..      93     113 ..      91     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.4
   PF12310.3  4 vvqkkelvfefasngvddeeq 24
                ++ + + ++++as++ +++++
  MMETSP0890-20130614|3054_1 19 AITQYGRALKYASQELKNNHE 39
                55667788999**99999887 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.091
   PF12310.3  3 avvqkkelvfefasngvddeeq 24
                a+v + + ++e+as++ +++++
  MMETSP0890-20130614|3054_1 43 AAVTQYGRALEYASDKLKNNHE 64
                578888999********99887 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.064
   PF12310.3  3 avvqkkelvfefasngvdde 22
                a+v +++ ++e+as+g ++ 
  MMETSP0890-20130614|3054_1 68 AAVTQNGYALEYASQGLKNY 87
                68999**********99875 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.054
   PF12310.3   3 avvqkkelvfefasngvddee 23 
                 a+v +k+ ++e+as++ ++  
  MMETSP0890-20130614|3054_1  93 AAVTQKGRALEYASDRLKNDR 113
                 6789999*********97765 PP

>> PF04312.8  Protein of unknown function (DUF460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0011       1.1      42      87 ..      14      60 ..      12      66 .. 0.83
   2 ?    3.7   0.0     0.037        36      43      85 ..      65     108 ..      60     116 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0011
   PF04312.8 42 ttgiavldldgevlalessreldrsev.ieliselGkpvivAtDvsp 87
                ++ +a+++ +g+ l+  s+   +++e+ + +++++G+++  A+D  +
  MMETSP0890-20130614|3054_1 14 EIVLAAITQYGRALKYASQELKNNHEIvLAAVTQYGRALEYASDKLK 60
                5779**************9988877761689********99999765 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.037
   PF04312.8  43 tgiavldldgevlalessreldrse.vieliselGkpvivAtDv 85 
                 + +a+++ +g  l+  s+   + +e v+ ++++ G+++  A+D 
  MMETSP0890-20130614|3054_1  65 IVLAAVTQNGYALEYASQGLKNYREiVLAAVTQKGRALEYASDR 108
                 56778888888888877766555551457788888887777775 PP

>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.1e-05     0.069      18      94 ..      14      96 ..       4     103 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.1e-05
   PF14200.1 18 kivnaa...sglyLdvdggatkegtkvqlwpasg.daaqqWkisqvgdgt.yrirna.ntglvLdvsggstkngtevvlweyd 94
                 iv aa    g++L+ +++  k++++++l + ++   a ++  ++  +++   +  + ++g++L+ ++++ kn  e+vl   +
  MMETSP0890-20130614|3054_1 14 EIVLAAitqYGRALKYASQELKNNHEIVLAAVTQyGRALEYASDKLKNNHeIVLAAVtQNGYALEYASQGLKNYREIVLAAVT 96
                44544333389*******************99999**********9998779998887889*****************98774 PP

>> PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   2.1e+02      79      99 ..      26      47 ..      20      51 .. 0.84
   2 ?    8.5   0.0    0.0015       1.5      79     104 ..      51      77 ..      48      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.22
   PF09837.4 79 llaqafeaLer.adlVlgpaeD 99
                 l+ a ++L++ +++Vl + ++
  MMETSP0890-20130614|3054_1 26 ALKYASQELKNnHEIVLAAVTQ 47
                588899*****99***988765 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0015
   PF09837.4  79 llaqafeaLer.adlVlgpaeDGGYyL 104
                  l+ a ++L++ +++Vl + ++ GY L
  MMETSP0890-20130614|3054_1  51 ALEYASDKLKNnHEIVLAAVTQNGYAL 77 
                 588899*****99************98 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   0.00023      0.22       9      57 ..      10      58 ..       6     114 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00023
   PF07926.7  9 keelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaet 57
                +++++++   i+++ ++++ + ++l+n +ei+ +a ++Y r l   ++ 
  MMETSP0890-20130614|3054_1 10 QDDHEIVLAAITQYGRALKYASQELKNNHEIVLAAVTQYGRALEYASDK 58
                6677777888888888888888888888888888888888777665554 PP

>> PF10628.4  Outer spore coat protein E (CotE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   2.6e+02       4      22 ..      37      55 ..      10      69 .. 0.59
   2 ?    8.4   0.0    0.0012       1.1       2      25 ..      85     108 ..      84     116 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.27
   PF10628.4  4 yreiitkavvakGrkftqs 22
                  ei+  av   Gr    +
  MMETSP0890-20130614|3054_1 37 NHEIVLAAVTQYGRALEYA 55
                3344555555555544444 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0012
   PF10628.4   2 seyreiitkavvakGrkftqstht 25 
                 ++yrei+  av  kGr    ++ +
  MMETSP0890-20130614|3054_1  85 KNYREIVLAAVTQKGRALEYASDR 108
                 79**************87766655 PP

>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0017       1.7     136     170 ..      10      44 ..       4      48 .. 0.86
   2 ?    4.4   0.2     0.016        15     145     170 ..      44      69 ..      41     114 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0017
                 -CHHHHHHHHHHHHHHHHHHHHHHS-TT-TTT--- CS
  PF00244.15 136 eerkeaaekaleaYkeAleiaeselkpthpirLgl 170
                 ++ +e++  a + Y +Al+ a++elk+ h i L  
  MMETSP0890-20130614|3054_1  10 QDDHEIVLAAITQYGRALKYASQELKNNHEIVLAA 44 
                 56778999999********************9975 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHS-TT-TTT--- CS
  PF00244.15 145 aleaYkeAleiaeselkpthpirLgl 170
                 a + Y +Ale a+++lk+ h i L  
  MMETSP0890-20130614|3054_1  44 AVTQYGRALEYASDKLKNNHEIVLAA 69 
                 667899***************99964 PP

>> PF05862.6  Helicobacter pylori IceA2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.41     4e+02      32      50 ..      11      29 ..       4      38 .. 0.70
   2 ?    0.8   0.0      0.37   3.6e+02      37      51 ..      41      55 ..      36      63 .. 0.80
   3 ?    0.6   0.0      0.43   4.2e+02      37      51 ..      66      80 ..      54      89 .. 0.78
   4 ?    4.7   0.0     0.022        22      37      51 ..      91     105 ..      86     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.41
   PF05862.6 32 dvdGhvvavvtakGkveey 50
                d    v a++t  G+  +y
  MMETSP0890-20130614|3054_1 11 DDHEIVLAAITQYGRALKY 29
                3344477999999988777 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.37
   PF05862.6 37 vvavvtakGkveeyk 51
                v a+vt  G+  ey 
  MMETSP0890-20130614|3054_1 41 VLAAVTQYGRALEYA 55
                789****99998886 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.43
   PF05862.6 37 vvavvtakGkveeyk 51
                v a+vt  G   ey 
  MMETSP0890-20130614|3054_1 66 VLAAVTQNGYALEYA 80
                779999999877764 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.022
   PF05862.6  37 vvavvtakGkveeyk 51 
                 v a+vt kG+  ey 
  MMETSP0890-20130614|3054_1  91 VLAAVTQKGRALEYA 105
                 78********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:01.06
# Mc/sec: 273.55
//
Query:       MMETSP0890-20130614|3069_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.4   0.2    3.7e-05   23.3   0.1    1.5  1  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.7e-09   3.7e-05       9      32 ..       4      28 ..       2      30 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.7e-09
                SSSSSEEEEEEESSSTEEEEEE.TT CS
  PF00400.27  9 gHtspVtcvafspdgpllasgS.rD 32
                 Ht++V+++a+spdg+++a+g+ rD
  MMETSP0890-20130614|3069_1  4 DHTFGVRSLAYSPDGTVIACGCyRD 28
                7*********************665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.89
# Mc/sec: 201.94
//
Query:       MMETSP0890-20130614|3070_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-45  155.3   5.8    2.1e-45  155.3   4.0    1.9  3  PF11831.3 pre-mRNA splicing factor component
  ------ inclusion threshold ------
        5.3    7.3   7.7        9.9    6.4   0.1    3.4  3  PF06156.8 Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF11831.3  pre-mRNA splicing factor component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.59     4e+03      60      73 ..      31      44 ..       5      67 .. 0.59
   2 !  155.3   4.0     3e-49   2.1e-45       7     357 ..      80     400 ..      72     403 .. 0.84
   3 ?   -3.1   0.1      0.42   2.9e+03     180     196 ..     456     472 ..     408     480 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.59
   PF11831.3 60 rkqkiqtpnplatp 73
                r++++q+p p++t+
  MMETSP0890-20130614|3070_1 31 RRSTLQLPAPMLTD 44
                34444445555444 PP

  == domain 2    score: 155.3 bits;  conditional E-value: 3e-49
   PF11831.3   7 nnntpirTprtpaeeDailqEaqnlraltetqtpllgg.entplhesdfegvtPrkqkiqtpnplatplrsgsaigatplkngvgatplrtplrDklsinpedse..aeevgetpreeklrekeakesLkssLasLPkPknefelelpeeeeeeaeeeee.eleeDaadrdarkraeeeakeqeelrkrsqviqrnLPRPseldksnLrpkenvedeeldeaeklikkEmllLlknDalkyPlkgkkpkgkaspl.edfedeeleeArklieaEleklkeemgeqeesleeideaweelneqvlflpsqnaytdaeea.sekdrieslkekleklrkkiekeaekakklEkklkilt 357
                 +++ ++rTp+tp  +D+ +qEa n  + ++ +tpllg+ ++ +l++++++g+tP +++  ++ +l        + ++tpl       +lrt   D  ++n +  +  a++  +t   +    ++ k++++ +L + PkPk  ++++lpe++e ++  ee    eeD+a+++ar++a+e+a+ +++l++r+  ++r+LPRP++++++ +              ++li +E+l+L++ Da +yP++g++    a  + +df+deel++Ar +ie+El+ +      ++  ++e+++a+++  ++++f+ps++++  +  a s    ie+ k+ ++ l  +++k +++a ++E k++i +
  MMETSP0890-20130614|3070_1  80 ERALTARTPKTPRTQDSLAQEAINALRHRQLDTPLLGQeQRDQLQGTGYDGATPAPDS-RASRQL--------QKSTTPLL----RDSLRTD--DIDEVN-SRFSrpASDAPSTSSAIS--FRRQKREVRLGLEAVPKPKYAYDVDLPEKSELTTICEEVeAPEEDQAEKEARQQAAEAAEVNRQLERRTAPVKRDLPRPRQIKSTPIA-------------DDLISREALRLMALDARTYPVAGGNTPPAALCIdDDFTDEELRRARHIIEQELATMP-----SSPDEKEFSQAFAKRLKSAIFFPSTREWGTVHTApSPAALIEARKASFDALLGQMTKGSNRAGRIEDKIEIKL 400
                 33589*********************************5667889*********9766.333333........33789994....5789999..666666.333300334444444444..5599*************************9999555554478****************************************999888.............9********************999977777666268*****************9866.....3444468*********************988776478999*****************************9986 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.42
   PF11831.3 180 eeakeqeelrkrsqviq 196
                  ++++   l++++q+++
  MMETSP0890-20130614|3070_1 456 TAHQQDTILQRQHQALR 472
                 33334444444444444 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.12   8.3e+02      24      43 ..     230     249 ..     209     271 .. 0.53
   2 ?    3.2   0.1     0.014        95      26      54 ..     395     423 ..     372     436 .. 0.65
   3 ?    6.4   0.1    0.0015       9.9      17      58 ..     440     484 ..     426     495 .] 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
   PF06156.8  24 leelkkelkelleenaelkl 43 
                  +e +++ +e  e n +l+ 
  MMETSP0890-20130614|3070_1 230 EKEARQQAAEAAEVNRQLER 249
                 23344455555555555554 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.014
   PF06156.8  26 elkkelkelleenaelkleneklrerlee 54 
                 +++ +l+ l++e  +lk  +e+l e+l+e
  MMETSP0890-20130614|3070_1 395 KIEIKLQPLIQEADTLKEAIEHLTEELDE 423
                 34444555555555555555555555554 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0015
   PF06156.8  17 leelleeleelkkelkelleenaelkleneklrerleelee...e 58 
                 + +l + l++ k+ +++  ++++ l+ + ++lr+rl+el++   +
  MMETSP0890-20130614|3070_1 440 MYSLPARLDRAKSLFQTAHQQDTILQRQHQALRHRLNELNSillS 484
                 455677889999999***********************9885541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       960  (0.0702165); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.90
# Mc/sec: 1318.00
//
Query:       MMETSP0890-20130614|3075_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   10.8   0.0        3.6    6.3   0.0    2.1  2  PF07212.6 Hyaluronidase protein (HylP)


Domain annotation for each model (and alignments):
>> PF07212.6  Hyaluronidase protein (HylP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0    0.0051        69     144     173 ..      55      84 ..       6      88 .. 0.84
   2 ?    6.3   0.0   0.00027       3.6     136     174 ..     122     159 ..     114     182 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0051
   PF07212.6 144 tsanengsamqlrgvekalgtlkithenps 173
                   +n +     +r +e al ++++t  nps
  MMETSP0890-20130614|3075_1  55 VGTNRQVRIAAVRAAESALSAIRLTTANPS 84 
                 45566666677999***************9 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00027
   PF07212.6 136 nfssalnitsanengsamqlrgvekalgtlkithenpsl 174
                  +ssalni+++n++g  +++   e +l  l++  ++ps 
  MMETSP0890-20130614|3075_1 122 ALSSALNIAASNDAGHNLEIM-REATLELLRLYAQQPSE 159
                 68****************996.57888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.53
# Mc/sec: 1980.39
//
Query:       MMETSP0890-20130614|3086_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2124  (0.155354); expected 273.4 (0.02)
Passed bias filter:                      759  (0.0555149); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.46s 00:00:01.46 Elapsed: 00:00:00.76
# Mc/sec: 1065.75
//
Query:       MMETSP0890-20130614|3083_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-86  288.6   0.0    5.8e-86  288.2   0.0    1.1  1  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.2   0.0   4.2e-90   5.8e-86      18     389 ..       2     392 ..       1     396 [. 0.91

  Alignments for each domain:
  == domain 1    score: 288.2 bits;  conditional E-value: 4.2e-90
  PF00022.14  18 aGfagedaPkavipsvvgkprgekvea.........klyvgdealekrpelevrnpvedGvvedwdameelwehvlkeelkvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgka........tglvvDsGasvtsvvpvleGlvLkkairrldlgGkalteqlkellsskkvevtprylikkkkavetesfktleeeevleeiKesvcevsddpeg..ekaeasseepessYeLPDg........seiilgeerfrvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaql...................apsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlwvskqeYeEkGssvve 389
                 +G+ag+  P+ ++p+vv++   ++ ++         ++y+g+eal++ +  ++++p+++G+ve+wd+me+lw++ ++e l+ +peeh +llteppln+p+nre ++ei+fE+f+vp+ly+a +avl++ as  +        tg v+DsG++vt+v+pv eG+v+  +i++ +l+G+++t  + +ll+++                  e + + ++ ev + iKe + +v  d ++   k++++ e+  ++Y    g         ++++g erf  pEi F+p++  s+       +  +++++ +ai +c++d+r+ L++niv++GG+++++ +  Rl++++++                     p++  v++i+ +  +++++W+GGS+LAs+g+f  ++ +kq+Y+E+G+++ +
  MMETSP0890-20130614|3083_1   2 MGYAGNCEPQYTVPTVVASRAAKGGTVkdtdgiedlDFYIGNEALAHSSTHQINYPIRHGLVENWDNMERLWQRCMFEYLRCEPEEHYFLLTEPPLNTPENREATAEIMFETFNVPGLYIAVQAVLALAASWTSksvtertlTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPLAGRDITAFVHKLLRER-----------------MEPIPSEDSLEVAKRIKEMHSYVCPDLAKefVKYDTAPEKYFRQY---QGkhkktnapWTCDIGYERFLGPEIFFNPEIFSSD------FIIPLPDVVDEAIIKCPIDTRRGLYKNIVLSGGSTMFKDFGRRLQRDIKRNvdkrldlniarlgnlahtsKPQKIDVNVISHQ-MQRFAVWFGGSMLASTGEFFRVCHTKQQYDEEGPRIAR 392
                 6*****************87777666677999999********************************************************************************************9999888999****************************************************5.................356788899999999999999999999974444444444444444...665555544349*****************999986......4699**********************************************99*************999888888899999999.**********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.98
# Mc/sec: 980.55
//
Query:       MMETSP0890-20130614|3096_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:01.41
# Mc/sec: 477.57
//
Query:       MMETSP0890-20130614|3105_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.87
# Mc/sec: 344.30
//
Query:       MMETSP0890-20130614|3107_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-47  161.0   0.2      2e-47  160.8   0.1    1.0  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
       0.02   14.3   0.1      0.037   13.5   0.1    1.4  1  PF12810.2  Glycine rich protein


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.1   2.9e-51     2e-47       1     190 []      34     216 ..      34     216 .. 0.97

  Alignments for each domain:
  == domain 1    score: 160.8 bits;  conditional E-value: 2.9e-51
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE.-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiG.sgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                 v++Gtt++++++++gv+++ad+r+++gs+++++ + +K+ ki+d+i+++ +G+aaD++++++++r  + ++ l+ +rp+ v+      aa l + +++s++  +++sl+iag+d  +g++++ i   G++i++   +aiG sgs+++++ +++ yk+++t++e+ +++++a++ a++rd +sg+ ++++vi
  MMETSP0890-20130614|3107_1  34 VSTGTTIMAVAYDGGVIMGADSRVSTGSYVANRVS-DKVTKIHDRIFACRSGSAADTQAVTDYVRHYLCSHALEAERPPLVS-----TAASLCKRICYSNKDQLLASLIIAGWDPVDGGSVFAIPLGGTCIKVP--FAIGgSGSTYIYGHVDNTYKPNMTKQECTDFVQEAISRAMQRDGSSGGIIRLVVI 216
                 689***************************88886.**********************************************.....**********************************************4..66666*********************************************99987 PP

>> PF12810.2  Glycine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.4e-06     0.037     181     246 ..     154     222 ..     143     226 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.4e-06
   PF12810.2 181 GGgsgkesgg.GgGGSSfisgk..dgcipngsihasdiffentelisgnnsnsgnGyarItilssikvt 246
                 GG ++k   + Gg+GS +i+g+  + ++pn + ++ + f+++++++  + + s  G++r+ ++++ +v 
  MMETSP0890-20130614|3107_1 154 GGTCIKVPFAiGGSGSTYIYGHvdNTYKPNMTKQECTDFVQEAISRAMQRDGSSGGIIRLVVIEQDSVD 222
                 67777766444**********9656677999999999***********9999999*****999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.65
# Mc/sec: 844.26
//
Query:       MMETSP0890-20130614|3113_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-36  122.4   5.0    8.1e-14   50.7   0.1    3.2  3  PF00400.27 WD domain, G-beta repeat
    2.2e-05   24.1   0.0    5.1e-05   22.9   0.0    1.6  1  PF08662.6  Eukaryotic translation initiation factor eIF2A
    0.00083   18.8   0.0       0.78    9.3   0.0    2.9  3  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.012   13.6   0.5      0.032   12.2   0.1    1.7  2  PF11715.3  Nucleoporin Nup120/160
      0.078   12.3   0.2       0.44    9.8   0.2    1.9  1  PF13360.1  PQQ-like domain
       0.17   11.8   0.2        4.1    7.4   0.0    2.4  2  PF00545.15 ribonuclease
       0.22   11.1   1.0         30    4.2   0.0    3.4  3  PF10313.4  Uncharacterised protein domain (DUF2415)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   4.2e-17   8.1e-14       2      39 .]      44      81 ..      43      81 .. 0.97
   2 !   49.7   0.3   8.7e-17   1.7e-13       3      39 .]      87     123 ..      85     123 .. 0.95
   3 !   23.1   0.0   2.1e-08   4.1e-05       4      28 ..     130     154 .]     127     154 .] 0.90

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 4.2e-17
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                e+++tl+gHt+ V+c++fs dg+++++gS D t ++Wd
  MMETSP0890-20130614|3113_1 44 ELLHTLEGHTGDVNCCKFSRDGRRVVTGSMDDTAKIWD 81
                689**********************************9 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 8.7e-17
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++ tl+gHt++V++++fspdg++++++S+D+t r+W+
  MMETSP0890-20130614|3113_1  87 LLLTLSGHTDWVRACDFSPDGTRVVTASSDRTARVWN 123
                 6889********************************7 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 2.1e-08
                 EEEEESSSSSEEEEEEESSSTEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgpllas 28 
                   +l+gHt pV+++afspdg+++++
  MMETSP0890-20130614|3113_1 130 FLVLEGHTLPVNACAFSPDGSRIIT 154
                 579******************9997 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.6e-08   5.1e-05      83     172 ..      33     124 ..      22     144 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.6e-08
   PF08662.6  83 akislfdlk.vnvisklk..ekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkia..kaeasnatlvewspdgryvlTattsprlrvdng 172
                 +k+ +fd +  +++++l+  ++  N+ ++s  gr v+++ + ++    +i+d  +   +   + +  +   +++spdg+ v+Ta++    rv n+
  MMETSP0890-20130614|3113_1  33 RKAFIFDTEtNELLHTLEghTGDVNCCKFSRDGRRVVTGSMDDT---AKIWDSMTGRLLLtlSGHTDWVRACDFSPDGTRVVTASSDRTARVWNA 124
                 577899997344556665225679**************999998...79***9955555400456677889**************9877777443 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.91   1.8e+03      16      24 ..      61      69 ..      57      69 .. 0.82
   2 !    6.0   0.0    0.0045       8.8      15      24 ..     102     111 ..      97     118 .. 0.86
   3 !    9.3   0.0    0.0004      0.78      14      24 ..     143     153 ..     141     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.91
                E-----EEE CS
   PF07676.7 16 wSPDGkkiv 24
                +S DG++ v
  MMETSP0890-20130614|3113_1 61 FSRDGRRVV 69
                8889*9976 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0045
                 EE-----EEE CS
   PF07676.7  15 awSPDGkkiv 24 
                  +SPDG++ v
  MMETSP0890-20130614|3113_1 102 DFSPDGTRVV 111
                 69*****987 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0004
                 EEE-----EEE CS
   PF07676.7  14 PawSPDGkkiv 24 
                  a+SPDG++i+
  MMETSP0890-20130614|3113_1 143 CAFSPDGSRII 153
                 69*******96 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.11   2.1e+02     235     256 ..      69      90 ..      59     104 .. 0.79
   2 ?   12.2   0.1   1.7e-05     0.032     221     253 ..     101     129 ..      82     151 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.11
   PF11715.3 235 ftlsrDgkLRvWnletgqclrt 256
                 +t s D + ++W+  tg +l t
  MMETSP0890-20130614|3113_1  69 VTGSMDDTAKIWDSMTGRLLLT 90 
                 47799********999998554 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.7e-05
   PF11715.3 221 ldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  d+s+    + t v+t s D++ RvWn e+g++
  MMETSP0890-20130614|3113_1 101 CDFSP----DGTRVVTASSDRTARVWNAENGTL 129
                 55666....556677****************99 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00022      0.44      35      98 ..      64     129 ..       8     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00022
   PF13360.1  35 dggtlfvasakgrlvaldaatGkvlWsksl.egeiegap.lvaggrvvvvtadnslvaldaetGkl 98 
                 dg++++++s +++   +d  tG++l + s  + ++++     +g rvv +++d++ +  +ae+G+l
  MMETSP0890-20130614|3113_1  64 DGRRVVTGSMDDTAKIWDSMTGRLLLTLSGhTDWVRACDfSPDGTRVVTASSDRTARVWNAENGTL 129
                 889999999999999999999999999999666666666678888888888999999999999975 PP

>> PF00545.15  ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0021       4.1      43      66 ..      53      76 ..      43      90 .. 0.80
   2 ?    2.0   0.0     0.099   1.9e+02      52      68 ..     104     120 ..      93     130 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0021
                EEEEE...-.----EEEEEETTT-B CS
  PF00545.15 43 teydvntpg.srGadRvVygsddkk 66
                t+ dvn ++ sr+ +RvV+gs d++
  MMETSP0890-20130614|3113_1 53 TG-DVNCCKfSRDGRRVVTGSMDDT 76
                45.8999555**********98665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.099
                 ----EEEEEETTT-BET CS
  PF00545.15  52 srGadRvVygsddkkcg 68 
                 s++  RvV+ s+d+++ 
  MMETSP0890-20130614|3113_1 104 SPDGTRVVTASSDRTAR 120
                 8999*****99976544 PP

>> PF10313.4  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.07   1.4e+02       4       9 ..      57      62 ..      54      67 .. 0.76
   2 ?    4.2   0.0     0.015        30       3      12 ..      98     107 ..      98     109 .. 0.86
   3 ?    0.9   0.0      0.17   3.3e+02       5      12 ..     142     149 ..     140     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.07
   PF10313.4  4 RvckFS 9 
                 +ckFS
  MMETSP0890-20130614|3113_1 57 NCCKFS 62
                59**** PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.015
   PF10313.4   3 fRvckFSpes 12 
                 +R+c FSp  
  MMETSP0890-20130614|3113_1  98 VRACDFSPDG 107
                 7******975 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.17
   PF10313.4   5 vckFSpes 12 
                 +c+FSp  
  MMETSP0890-20130614|3113_1 142 ACAFSPDG 149
                 6****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 670.98
//
Query:       MMETSP0890-20130614|3114_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-12   44.9   2.1    9.5e-12   44.5   1.4    1.1  1  PF02575.11 YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.061   12.9   0.0      0.088   12.4   0.0    1.3  1  PF09167.6  Domain of unknown function (DUF1942)
       0.11   12.1   0.9       0.15   11.7   0.6    1.1  1  PF08614.6  Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> PF02575.11  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   1.4   2.1e-15   9.5e-12       1      91 [.      50     138 ..      50     140 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.1e-15
  PF02575.11   1 mkqaqkmqekmeeaqeelaekevegesggglVkVtvnGkgevksveidpelldpedkemledlivaAindAlkkaeelakeemskltggln 91 
                 +k+aq++ +  +e+q+ela+++veg s +g +  +v+G++    v+i +  ++  d   l+  +++A++ A+ k+ + ++ +m++l ++++
  MMETSP0890-20130614|3114_1  50 FKKAQQIAKRSNELQQELAATTVEGASVDGKIIFKVTGQQTPETVTIAD--FESYDGASLSASLTEALKTAQDKSLQVMNDKMQELYKEIG 138
                 69*********************************************99..44589*****************************998875 PP

>> PF09167.6  Domain of unknown function (DUF1942)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05     0.088      90     118 ..      68      97 ..      39     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
   PF09167.6  90 patlaqGekttGkiYFDvtGee.Pdsvvyn 118
                 +at  +G+++ Gki F vtG++ P++v   
  MMETSP0890-20130614|3114_1  68 AATTVEGASVDGKIIFKVTGQQtPETVTIA 97 
                 467789**************8648888765 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   3.3e-05      0.15      23     111 ..      50     137 ..      42     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.3e-05
   PF08614.6  23 feqyrkLadrtrllkaenealqaekkevqssassstsasgsgsdaaiaeleqk.laklreelaelhkkrgelaqrllllneeleekreei 111
                 f++ +++a+r+++l++e +a + e ++v  +   + + +++ ++++ia+ e    a+l + l+e++k+  +  ++l  +n++++e+ +ei
  MMETSP0890-20130614|3114_1  50 FKKAQQIAKRSNELQQELAATTVEGASVDGKIIFKVTGQQTPETVTIADFESYdGASLSASLTEALKTAQD--KSLQVMNDKMQELYKEI 137
                 5666999****************9999999999****************98752799*********98765..78999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      645  (0.0471767); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 664.65
//
Query:       MMETSP0890-20130614|3119_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|3125_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        98  (0.00716793); expected 273.4 (0.02)
Passed bias filter:                       80  (0.00585138); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.38s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 138.74
//
Query:       MMETSP0890-20130614|3130_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-05   24.1   0.0      0.043   13.4   0.0    2.0  2  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
      0.013   14.9   2.5        0.4   10.2   0.1    2.4  2  PF07671.6  Protein of unknown function (DUF1601)
       0.26   11.0   2.2        2.5    7.9   0.0    2.8  3  PF11693.3  Protein of unknown function (DUF2990)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.5e-06     0.043      18      50 ..       4      36 ..       2      39 .. 0.92
   2 !    9.2   0.0   0.00018      0.83      18      50 ..      41      73 ..      37      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.5e-06
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a +  ++L  + p++l n+vw+++ 
  MMETSP0890-20130614|3130_1  4 APALFNAIADVARTKLLDFTPQNLANTVWAFAT 36
                5689**************************986 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00018
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+ +a +  ++L  ++p++l n+  +++ 
  MMETSP0890-20130614|3130_1 41 APTLFNEIADVARTKLRDFNPQNLANTARAFAT 73
                6789**********************9999876 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0044        20      17      36 ..       7      30 ..       4      31 .. 0.68
   2 ?   10.2   0.1   8.7e-05       0.4      26      36 ..      57      67 ..      44      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0044
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         F pQ+ ANt
  MMETSP0890-20130614|3130_1  7 LFNAIAdvarTKLLDFTPQNLANT 30
                55666655544455699******9 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.7e-05
   PF07671.6 26 erFNpQsIANt 36
                + FNpQ+ ANt
  MMETSP0890-20130614|3130_1 57 RDFNPQNLANT 67
                77********9 PP

>> PF11693.3  Protein of unknown function (DUF2990)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.062   2.8e+02      10      20 ..       3      13 ..       1      18 [. 0.83
   2 ?    7.9   0.0   0.00054       2.5       5      20 ..      35      50 ..      31      59 .. 0.85
   3 ?    0.2   0.2      0.14   6.3e+02       5      15 ..      72      82 .]      61      82 .] 0.70

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.062
   PF11693.3 10 AAPtlfdniYd 20
                 AP+lf+ i d
  MMETSP0890-20130614|3130_1  3 EAPALFNAIAD 13
                59****99876 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00054
   PF11693.3  5 tAtslAAPtlfdniYd 20
                + ts+ APtlf++i d
  MMETSP0890-20130614|3130_1 35 ATTSVEAPTLFNEIAD 50
                6789*********977 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.14
   PF11693.3  5 tAtslAAPtlf 15
                +  s+ AP+lf
  MMETSP0890-20130614|3130_1 72 ATASVEAPALF 82
                44567788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.35s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 327.50
//
Query:       MMETSP0890-20130614|3132_1  [L=957]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   11.9   0.7       0.22   10.8   0.5    1.6  1  PF03954.9 Hepatic lectin, N-terminal domain
        1.3    8.5   6.4        1.2    8.6   0.1    3.0  4  PF04949.8 Transcriptional activator


Domain annotation for each model (and alignments):
>> PF03954.9  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   3.2e-05      0.22      56     136 ..      79     167 ..      76     169 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.2e-05
   PF03954.9  56 qnsqLreelrtLretlsnltsstkaevkaldt....aGgsvgqkltsleskle....kkqqdLkaDhssLllhvkqlrkDlraltCqla 136
                 q  q+++e+++  +++s   ss  ++v+++ +     G+++ +kl+s  s++     +++++L      Ll h ++l    r +   l+
  MMETSP0890-20130614|3132_1  79 QRLQIKREFESTLKQMSEAVSSACDDVDSVRSemqsLGQDTRSKLRSARSEMSgpnfERREQLARSRAVLLGHCEDLDRQCREVNSDLE 167
                 789******988888999999999999998765555999999******999854444677889999*********99999998887766 PP

>> PF04949.8  Transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00017       1.2      62     117 ..      75     129 ..      53     168 .. 0.87
   2 ?    2.0   0.3     0.019   1.3e+02      35      96 ..     211     273 ..     178     285 .. 0.77
   3 ?   -1.4   0.0      0.21   1.4e+03      41      69 ..     271     303 ..     258     318 .. 0.54
   4 ?   -2.9   0.0       0.6   4.1e+03     113     151 ..     578     617 ..     571     618 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00017
   PF04949.8  62 eeeskrlaeireelegladPmrkevevvrkkidsvnrelkplGktvqkkekeykea 117
                 e e +rl +i++e+e+    m   v+     +dsv  e+++lG+    k +  +  
  MMETSP0890-20130614|3132_1  75 EWERQRL-QIKREFESTLKQMSEAVSSACDDVDSVRSEMQSLGQDTRSKLRSARSE 129
                 5566777.68999********************************99998766655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.019
   PF04949.8  35 lfkakeeeierkklevrervqaqlGrveeeskrlaeireelegl..adPmrkevevvrkkidsv 96 
                 + +a+ + +e+k ++v       +G+v     rla+  +   ++  a   r +v+vv k++d++
  MMETSP0890-20130614|3132_1 211 ASRARLDRLEHKVKDVLSC-ALDVGQVASHRARLAKETKPSAAMylAKSPRADVAVVMKRLDKI 273
                 5566777777776666653.4567999999999998776555542288899***********98 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.21
   PF04949.8  41 eeierkklevrervq....aqlGrveeeskrla 69 
                 ++i    l ++e+v     +++G ++++skrl 
  MMETSP0890-20130614|3132_1 271 DKIYELALAIQEKVVpdltQRIGDIQKKSKRLN 303
                 444444444555543111145566666666665 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 0.6
   PF04949.8 113 eykealea.yneknkekaelvtkllelvgeseklrmkkle 151
                 +y+  +ea y + + ek   v+k+l+  +  e + +kkl+
  MMETSP0890-20130614|3132_1 578 DYRSQVEAiYRQYAPEKFDKVNKILNDYAGREEILLKKLN 617
                 5777777657777889999999999988888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.36u 0.40s 00:00:01.76 Elapsed: 00:00:01.85
# Mc/sec: 1239.63
//
Query:       MMETSP0890-20130614|3138_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-10   39.3   0.0    4.5e-10   39.1   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    9.1e-05   22.0   0.0    0.00012   21.6   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   6.6e-14   4.5e-10      20      65 ..       2      47 ..       1      51 [. 0.74

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 6.6e-14
   PF13306.1 20 pssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsiti 65
                p  +t+Ig+ aF++c+sl+++ lp+s+t i + aF +c +  +i i
  MMETSP0890-20130614|3138_1  2 PAGLTTIGDLAFYGCTSLTQLALPDSITDIRSDAFIGCPNDLTIAI 47
                6778888888888888888888888888888888888866444444 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-08   0.00012      13      50 ..       5      41 ..       3      41 .. 0.96

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.7e-08
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50
                l++i+d aF g+++L+ L L  ++++ i ++af g+p+
  MMETSP0890-20130614|3138_1  5 LTTIGDLAFYGCTSLTQLALP-DSITDIRSDAFIGCPN 41
                899******************.**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        87  (0.00636337); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.70
# Mc/sec: 178.02
//
Query:       MMETSP0890-20130614|3143_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-05   23.9   0.0    4.2e-05   23.1   0.0    1.5  1  PF00855.12 PWWP domain


Domain annotation for each model (and alignments):
>> PF00855.12  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.1e-09   4.2e-05       3      50 ..      95     148 ..      93     169 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3.1e-09
                 ----EEEE-B---BSEEEE..EE-GCCTSSSS......-SS-EEEEE----EEE CS
  PF00855.12   3 kigdlVlaKvkgfpwWPAr..vvsqketptsvr....rksnkvkVlFfgdhkta 50 
                 + g lV+aK ++ pwWP++  ++++++  + +     + + ++ Vl+fg+ ++ 
  MMETSP0890-20130614|3143_1  95 RLGKLVWAKSGSHPWWPGElaIIDKEALFEAMPptapKLQRRLIVLYFGETQYD 148
                 5789*************9822344444433333777777888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.93
# Mc/sec: 507.62
//
Query:       MMETSP0890-20130614|3151_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-19   69.1   2.6    2.1e-13   49.4   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.18    9.8   1.7        0.6    8.1   0.4    1.9  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   4.9e-08   0.00034      22      39 .]       2      19 ..       1      19 [. 0.94
   2 !   49.4   0.1     3e-17   2.1e-13       2      38 ..      24      60 ..      23      61 .] 0.95

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.9e-08
                SSTEEEEEETTSEEEEEE CS
  PF00400.27 22 dgpllasgSrDgtirlWd 39
                dg++++++S+D+t ++Wd
  MMETSP0890-20130614|3151_1  2 DGRRVVTASWDRTAKIWD 19
                6899*************9 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 3e-17
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38
                 ++ tlrgHt++V ++ fspdg+l++++S+Dgt r+W
  MMETSP0890-20130614|3151_1 24 RLLLTLRGHTFSVLACEFSPDGSLVVTASDDGTARVW 60
                56889******************************** PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4   8.7e-05       0.6     234     258 ..       6      30 ..       2      59 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 8.7e-05
   PF11715.3 234 vftlsrDgkLRvWnletgqclrttd 258
                 v+t s D++ ++W+  tg +l t  
  MMETSP0890-20130614|3151_1   6 VVTASWDRTAKIWDSLTGRLLLTLR 30 
                 569***************9954443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 235.77
//
Query:       MMETSP0890-20130614|3158_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-16   59.5   0.0    2.7e-16   59.3   0.0    1.1  1  PF13306.1 Leucine rich repeats (6 copies)
    3.1e-07   29.9   0.1    1.1e-05   24.9   0.0    2.3  3  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   3.9e-20   2.7e-16       8      78 ..       2      68 ..       1      76 [. 0.80

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 3.9e-20
   PF13306.1  8 FyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFs 78
                F nc++lt++t+p+ +t+Ig+ aF nc+sl++++lp  lt+ige+aF++c   +++ti   +t+ +e+aF 
  MMETSP0890-20130614|3158_1  2 FWNCTSLTHLTLPTGLTKIGDDAFWNCTSLTQLSLPAGLTTIGERAFDDC--PNDLTI--GITNTDEQAFD 68
                88999999999999999999999999999999999999999999999999..555555..46777777775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00067       4.6      45      56 ..       2      13 ..       1      15 [. 0.93
   2 !   24.9   0.0   1.7e-09   1.1e-05       2      50 ..       7      53 ..       6      53 .. 0.95
   3 !    4.3   0.0    0.0045        31      13      26 ..      40      53 ..      38      70 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00067
   PF13855.1 45 fkgLpsLreLnL 56
                f++++sL++L L
  MMETSP0890-20130614|3158_1  2 FWNCTSLTHLTL 13
                9*********98 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 1.7e-09
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50
                +L++L L    l++i+d+aF ++++L+ L+L    l++i ++af+++p+
  MMETSP0890-20130614|3158_1  7 SLTHLTLPTG-LTKIGDDAFWNCTSLTQLSLP-AGLTTIGERAFDDCPN 53
                8999****99.*********************.*************996 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0045
   PF13855.1 13 lkvipdgaFkglsn 26
                l++i+++aF +++n
  MMETSP0890-20130614|3158_1 40 LTTIGERAFDDCPN 53
                77888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.83
# Mc/sec: 236.75
//
Query:       MMETSP0890-20130614|3152_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.91
# Mc/sec: 210.67
//
Query:       MMETSP0890-20130614|3162_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-13   50.4   1.3    2.4e-13   50.0   0.9    1.2  1  PF06916.8 Protein of unknown function (DUF1279)
  ------ inclusion threshold ------
       0.87    9.3   5.7       0.83    9.4   2.8    1.7  2  PF12084.3 Protein of unknown function (DUF3561)


Domain annotation for each model (and alignments):
>> PF06916.8  Protein of unknown function (DUF1279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.9   3.5e-17   2.4e-13       6      89 ..      19      94 ..      14      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 3.5e-17
   PF06916.8  6 lfkkYGkvalgvylsislidlgicYllvksgvdveelleklklsiksskeveklsksswgelalAYaihKilipiRvpiTlait 89
                + +kYG+  + vy++is++ +g++Y++   gvd+  ll+kl++s   s     + +++++ ++lA++i+K+l+pi++p+  +it
  MMETSP0890-20130614|3162_1 19 FAQKYGWPFVIVYMAISAVIFGLIYTALLWGVDIRFLLDKLGIS---S-----KVAQQTSLFFLALGITKLLFPIKLPLAGIIT 94
                789*****************************************...3.....33446889*****************998887 PP

>> PF12084.3  Protein of unknown function (DUF3561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.8   0.00012      0.83      52      82 ..      19      50 ..      14      77 .. 0.73
   2 ?   -0.3   0.1      0.12   8.2e+02      35      46 ..      72      83 ..      52      98 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00012
   PF12084.3 52 ffllytwPfflallPva.vlvGvalslllegk 82
                f   y wPf +  + ++ v+ G++++ ll g 
  MMETSP0890-20130614|3162_1 19 FAQKYGWPFVIVYMAISaVIFGLIYTALLWGV 50
                6667***********963778****9998763 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.12
   PF12084.3 35 yllalaiPflly 46
                ++lal+i  ll+
  MMETSP0890-20130614|3162_1 72 FFLALGITKLLF 83
                444554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.77
# Mc/sec: 438.81
//
Query:       MMETSP0890-20130614|3161_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   31.0   0.0    4.6e-07   29.6   0.0    1.7  1  PF08774.6 VRR-NUC domain
  ------ inclusion threshold ------
        3.5    7.8   9.5          5    7.3   6.6    1.1  1  PF12446.3 Protein of unknown function (DUF3682)


Domain annotation for each model (and alignments):
>> PF08774.6  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   6.7e-11   4.6e-07      33      99 ..       4     110 ..       1     111 [. 0.83

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 6.7e-11
   PF08774.6  33 ealaklfrk....rglrsGvPDlilwlpegkrp......................................ifllvEvKgpgdklsdkQrawldrlarsgvkvevcrva 99 
                  ala + r+    ++l  G+PDl +++  ++ +                                       +++vEvK+  dkl  +Q+ wl+ l++ g++++v+rv+
  MMETSP0890-20130614|3161_1   4 PALAGIIRRmlkeSAL-NGFPDLTCLKALSQDKkeditetllpfssfkpdrkslnewilteklripegtefRIRFVEVKT-TDKLKYNQTLWLNYLQSLGFNAGVLRVK 110
                 5677777777774555.*********6666644667888888888888888888999999999999999999*******7.6*************************97 PP

>> PF12446.3  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.6   0.00072         5      94     121 ..     110     137 ..     101     140 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00072
   PF12446.3  94 trqeeeeeeeenekqqqsdEaqvqqhqq 121
                 +++eeee e e+ek+++  E+q  q+++
  MMETSP0890-20130614|3161_1 110 KKEEEEEKEKEKEKKEKRKEEQTTQNKR 137
                 4555555555667777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1820  (0.133119); expected 273.4 (0.02)
Passed bias filter:                      844  (0.061732); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.48s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 489.69
//
Query:       MMETSP0890-20130614|3160_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42   11.2   5.3        6.6    7.4   0.1    2.5  2  PF08576.5 Eukaryotic protein of unknown function (DUF1764)


Domain annotation for each model (and alignments):
>> PF08576.5  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00048       6.6      78      96 ..      72      90 ..      24      92 .. 0.79
   2 ?    5.6   0.9    0.0018        24      12      32 ..     137     157 ..     102     174 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00048
   PF08576.5 78 eeeLkigkpkaGnTkdCPF 96
                + eLki+++k G+T++ PF
  MMETSP0890-20130614|3160_1 72 SPELKISETKKGETPEGPF 90
                379***************9 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0018
   PF08576.5  12 ekkdidaifseakkkekkkke 32 
                 ++k+i++   +a+kk++++k+
  MMETSP0890-20130614|3160_1 137 SSKSISSSKRDANKKKQQRKK 157
                 111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       885  (0.0647308); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 748.86
//
Query:       MMETSP0890-20130614|3164_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-32  110.3   0.0    1.5e-30  106.2   0.0    2.2  1  PF00488.16 MutS domain V
    0.00086   19.0   0.1      0.086   12.6   0.0    3.0  3  PF13173.1  AAA domain
     0.0032   17.5   0.1      0.015   15.4   0.0    2.2  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0053   16.9   0.0      0.011   15.9   0.0    1.5  1  PF01541.19 GIY-YIG catalytic domain
     0.0057   16.9   1.3       0.02   15.1   0.1    2.3  2  PF13191.1  AAA ATPase domain
     0.0059   15.9   0.0      0.014   14.7   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.017   14.7   0.0        3.4    7.2   0.0    2.6  2  PF03266.10 NTPase
      0.069   13.1   0.3       0.53   10.2   0.0    2.6  2  PF13401.1  AAA domain
      0.069   12.4   0.8       0.89    8.8   0.0    2.5  2  PF13481.1  AAA domain
       0.16   12.1   0.1       0.43   10.7   0.0    1.7  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   1.1e-33   1.5e-30       2     227 ..     241     451 ..     240     455 .. 0.83

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 1.1e-33
                 B--EEE-..-EEEEEE--CCCCCC.TTS----EEEEECTTSS.EEEEE--TT---HHHHHHHHHHHHHHC----BSSSEEEEE.--SEEEEE---.--S------CHHHHHHHHHHHHCC--TTSEE.EEE-------ST---HHHHHHHHHHHHC.T-EEEEE-S-C.CCCCHHHHSTTEEEEEEEEEEESSEEEEEEEEE----S-----HHHHHTT--HHHHHHHHH CS
  PF00488.16   2 vrPelteekelkieegrHpvveavleeeefvaNdveleeeksrlllitGpNmgGKStylrqvalivllaqiGsfvpaesaeis.ivdkiftRiga.sDdlakgeStFmvEmletasiLknateksLv.ilDElGRGtstydGlaialavlehllekvkaktlfatHyh.eltklaekleevknlhlavkeededlvflykvkegaaeksyGikvaelaglPesvveeake 227
                 + P+++++++l +++   p+    le  + ++Ndv+l+  +    ++tGpN +GKSt+lr+v+ ++lla  G   pa+sa ++  +d++f R ++ +D  + g+S+F  Em ++a +++++ ++s v ++DE+G+Gts ++  a+  a+l  ++++ + + +fatH h e++ + +      + h + +      +  y++ +g++  s  ++ a+ ag+Pe+++++a+ 
  MMETSP0890-20130614|3164_1 241 CLPKIASDNNLIFKGLV-PYW---LEMGQCIPNDVSLNYGQ--SAILTGPNQAGKSTLLRSVGAATLLAARGLRCPARSALFPqSLDSVFLRAASrGDAPSFGKSAFAREMDDVALLFRECRADSTViLVDEIGKGTSPTEAAALGAAILAEFSDR-NFRGIFATHLHrEIAPILD------SDHPRWQ------MQDYNLVSGVCADSLALQCAQQAGVPEKIIHRASC 451
                 66667666555554433.333...344689********998..899***********************************96368******9873588899*******************999865157***********************996.89*******8824444333......3333332......346999**************************975 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.067        92      39      85 ..      81     129 ..      57     156 .. 0.64
   2 ?   -3.9   0.0       7.8   1.1e+04      59      84 ..     204     229 ..     191     234 .. 0.56
   3 !   12.6   0.0   6.3e-05     0.086       4      28 ..     278     310 ..     275     379 .. 0.61

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.067
   PF13173.1  39 deelrkladpellelflek.lke....kkkylflDEiqevpewedalkslvd 85 
                 d +l+k+++   +++f ++         ++ ++ DE+ +v++    ++    
  MMETSP0890-20130614|3164_1  81 DIDLEKMNEI--DQFFAKNeH-LfrdtVHESIIADEWNNVKDTAHKVRTAAA 129
                 3344444433..444444421.1223333459********999888887665 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 7.8
   PF13173.1  59 kekkkylflDEiqevpewedalkslv 84 
                  ++ +y+ lD i  + ++ +a k  +
  MMETSP0890-20130614|3164_1 204 ARHLYYVHLDAILCAAGLVEAAKAAI 229
                 33456677776666666666666555 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 6.3e-05
   PF13173.1   4 ilvitGpRrvGKttllkqlakell........k 28 
                   ++tGp ++GK+tll+ +    l        +
  MMETSP0890-20130614|3164_1 278 SAILTGPNQAGKSTLLRSVGAATLlaarglrcP 310
                 579*************99976666566655552 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.9   3.9e+03      64      85 ..      87     105 ..      31     129 .. 0.68
   2 !   15.4   0.0   1.1e-05     0.015       2      83 ..     280     377 ..     279     412 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.9
                 EETGGGC-HHHSS..TTHCHHH CS
  PF00004.24  64 iDEidalaksrsgseseeeerv 85 
                 + Eid+++ ++   e+ ++++v
  MMETSP0890-20130614|3164_1  87 MNEIDQFFAKN---EHLFRDTV 105
                 45666666666...44444444 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.1e-05
                 EEE-------HHHHHHHHHHC........THE.................EEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCH CS
  PF00004.24   2 llyGppGtGKTllakavakel........gve.................fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeee 83 
                 +l+Gp   GK++l ++v   +          +                   + +++++ ++ +   +++++ lf+e+++ +  +++++DEi + ++        e+ 
  MMETSP0890-20130614|3164_1 280 ILTGPNQAGKSTLLRSVGAATllaarglrC-ParsalfpqsldsvflraASRGDAPSFGKSAFAREMDDVALLFRECRADS--TVILVDEIGKGTSPT------EAA 377
                 799**************9995344443330.133333444444443333556666677766999**************998..********9876555......333 PP

>> PF01541.19  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.3e-06     0.011       4      70 ..     500     554 ..     497     560 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.3e-06
                 -EEEEETTT--EE----SSHHHHHHHHHHHHH----S-HH--.--EEEEES------HHHHHHHHHH CS
  PF01541.19   4 vYiivnkknkvlYiGstnnlerRlkeHnagkesketkqkkygkdkfeltiveeirtkqealelEkel 70 
                 +Y++    + ++Y+G++ +l  Rl++H+++ +           ++ +  ++   ++k+ a  +E+ l
  MMETSP0890-20130614|3164_1 500 LYVLN--LGDCFYVGESDDLATRLQKHRKKGS----------VWCTADAYFITVNDKSLARRYETLL 554
                 56555..57889***************99877..........5555555666666666666666555 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.2   1.6e+03      69      99 ..     198     228 ..     169     250 .. 0.51
   2 !   15.1   0.1   1.4e-05      0.02      23     141 ..     277     368 ..     269     408 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.2
   PF13191.1  69 saiiqalrellrqlltelaaelggwrealla 99 
                  a+++++r+l+   l++   ++g  ++a++a
  MMETSP0890-20130614|3164_1 198 KALRELARHLYYVHLDAILCAAGLVEAAKAA 228
                 1222224444444444444444444444443 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.4e-05
   PF13191.1  23 splllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr..rpk.lvlvlDDlq 141
                 + + ++tGp   GKS+Llr+     + ++ + aa + +++ r+           +l+ q l+ +  +++++++a++  ++a             +++++d+ +   r  r+  +v+++D++ 
  MMETSP0890-20130614|3164_1 277 Q-SAILTGPNQAGKSTLLRS-----VGAATLLAARGLRCPARS-----------ALFPQSLDSVFLRAASRGDAPSFGKSA-------------FAREMDDVALLFRecRADsTVILVDEIG 368
                 3.789***************.....888888888888888887...........455555555555555555555544444.............5555555555555432224788888743 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05     0.014      23      41 ..     276     294 ..     266     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1e-05
   PF13555.1  23 gkntlltGasGsGKSTllD 41 
                 g++ +ltG++ +GKSTll 
  MMETSP0890-20130614|3164_1 276 GQSAILTGPNQAGKSTLLR 294
                 56899************85 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0025       3.4       3      21 ..     280     298 ..     278     312 .. 0.77
   2 ?    4.7   0.0     0.015        20      70     106 ..     335     369 ..     320     372 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0025
                 EEE-------HHHHHHHHH CS
  PF03266.10   3 fiTGepgvGKtTlvkkvle 21 
                 ++TG+ + GK+Tl++ v +
  MMETSP0890-20130614|3164_1 280 ILTGPNQAGKSTLLRSVGA 298
                 89************98854 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
                 --------HHHHHHHHHHHHHHHHHHH-EEEE----- CS
  PF03266.10  70 rvgkyvvnleefeelalpalrnaleeadviviDEIGk 106
                 ++gk  +   e++++al  +r+   ++ vi++DEIGk
  MMETSP0890-20130614|3164_1 335 SFGKSAFA-REMDDVAL-LFRECRADSTVILVDEIGK 369
                 55555554.55666655.4555567889********7 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.95   1.3e+03      89      99 ..     107     117 ..      13     200 .. 0.65
   2 ?   10.2   0.0   0.00038      0.53       3      60 ..     275     326 ..     272     390 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.95
   PF13401.1  89 rlliiDEaqrL 99 
                 + +i DE +++
  MMETSP0890-20130614|3164_1 107 ESIIADEWNNV 117
                 44555554444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00038
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqklls 60 
                 + +++++tG+  +GK+tllr +             ar +++ a +   p++l + +l+
  MMETSP0890-20130614|3164_1 275 YGQSAILTGPNQAGKSTLLRSVGAATLL------AARGLRCPARSALFPQSLDSVFLR 326
                 67899***************99886433......333333333333333333333333 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.14   1.9e+02     123     177 ..     116     167 ..      80     170 .. 0.67
   2 ?    8.8   0.0   0.00065      0.89      32      58 ..     275     301 ..     268     316 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.14
   PF13481.1 123 dalltadlerllaaieelegpdlvviDtlsrlvgg.densnsdv.gaviaalerlak 177
                 +  +++  ++++ a+ e+ + + + +D+l++lv+  + +   ++ ++++a+l+r ++
  MMETSP0890-20130614|3164_1 116 N--VKDTAHKVRTAAAEIADFGELSFDSLNNLVALkNIK---KMhEQLVAPLDRYRR 167
                 2..3444578888999999999999********964444...444689999999876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00065
   PF13481.1  32 rgsltllaGapgtGKStlalqlaaava 58 
                  g+ ++l+G+  +GKStl+ + +aa +
  MMETSP0890-20130614|3164_1 275 YGQSAILTGPNQAGKSTLLRSVGAATL 301
                 5899***************99999987 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5   4.8e+03     119     119 ..     107     107 ..      25     170 .. 0.54
   2 ?   10.7   0.0   0.00031      0.43      23      41 ..     280     298 ..     270     308 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.5
   PF13476.1 119 e 119
                 e
  MMETSP0890-20130614|3164_1 107 E 107
                 1 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00031
   PF13476.1  23 lItGpNGsGKTTildAicl 41 
                 ++tGpN +GK+T+l +   
  MMETSP0890-20130614|3164_1 280 ILTGPNQAGKSTLLRSVGA 298
                 79************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.06u 0.42s 00:00:01.48 Elapsed: 00:00:01.22
# Mc/sec: 1211.93
//
Query:       MMETSP0890-20130614|3171_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   22.1   3.7       0.23   11.7   0.2    2.2  2  PF12711.2  Kinesin motor
      0.009   15.7   1.2        2.5    7.9   0.2    2.2  2  PF00486.23 Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.011   15.4   0.4        3.1    7.6   0.1    2.2  2  PF12789.2  Phage tail repeat like
      0.022   14.7   0.5      0.025   14.5   0.4    1.1  1  PF13167.1  GTP-binding GTPase N-terminal
      0.067   11.7   6.6      0.073   11.6   4.6    1.0  1  PF08317.6  Spc7 kinetochore protein
       0.07   12.9   6.4       0.79    9.6   1.2    2.1  2  PF14197.1  Centrosome localisation domain of PPC89
      0.077   12.6   5.1       0.28   10.8   0.8    2.1  2  PF04859.7  Plant protein of unknown function (DUF641)
      0.095   12.3   1.3        8.5    6.1   0.1    2.1  2  PF09902.4  Uncharacterized protein conserved in bacteria (DUF2129)
       0.11   12.8   5.6        4.6    7.6   3.8    2.0  2  PF14357.1  Domain of unknown function (DUF4404)
       0.21   11.6   8.4        3.9    7.6   0.2    2.4  2  PF08581.5  Tup N-terminal
       0.44   10.2   9.6         24    4.7   6.6    2.1  1  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.53   10.3   6.2        2.9    7.9   0.6    2.0  2  PF08860.5  Domain of unknown function (DUF1827)
        0.6    9.1  10.2       0.72    8.9   7.1    1.0  1  PF12072.3  Domain of unknown function (DUF3552)
       0.69   10.2   4.8       0.97    9.7   3.3    1.3  1  PF04102.7  SlyX
       0.82    9.3   5.7        1.1    8.9   3.5    1.5  2  PF03735.9  ENT domain
       0.99    9.0   6.5        1.5    8.4   4.5    1.4  1  PF06102.7  Domain of unknown function (DUF947)
          1    9.1  10.5         30    4.4   7.2    2.3  2  PF08312.7  cwf21 domain
        1.4    8.8   6.3        3.4    7.5   0.6    2.0  2  PF10779.4  Haemolysin XhlA
        1.9    8.2   7.2        0.9    9.2   2.3    2.0  2  PF11629.3  C terminal SARAH domain of Mst1
        1.9    8.1   9.0        1.9    8.1   0.7    2.4  2  PF04394.9  Protein of unknown function, DUF536
        2.4    6.8   7.3        2.7    6.7   5.1    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
          6    6.8   7.0        7.6    6.5   0.7    2.1  2  PF04568.7  Mitochondrial ATPase inhibitor, IATP
        6.7    6.3   9.7      3e+02    1.0   6.6    2.3  1  PF07544.8  RNA polymerase II transcription mediator complex subunit 9


Domain annotation for each model (and alignments):
>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   0.00039      0.23      31      55 ..       4      29 ..       2      34 .. 0.84
   2 !   11.6   0.4   0.00042      0.25      23      51 ..      35      63 ..      26      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00039
   PF12711.2 31 eEiklLreqveknpevtrfal.Enlr 55
                eEi +Lre++e+   v r+++ E+++
  MMETSP0890-20130614|3171_1  4 EEISTLREKLEQKDAVSRVKIqELTQ 29
                8*****************99845555 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00042
   PF12711.2 23 eeeneeLkeEiklLreqveknpevtrfal 51
                +ee +   eEi +Lre++e+   v r+++
  MMETSP0890-20130614|3171_1 35 DEEIRIRDEEISTLREKLEQKDAVSRVKI 63
                456666789****************9876 PP

>> PF00486.23  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0057       3.4      49      61 ..       5      17 ..       3      32 .. 0.74
   2 !    7.9   0.2    0.0043       2.5      47      61 ..      42      56 ..      19      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0057
                HHHHHHHHHHSST CS
  PF00486.23 49 hisrLRkkledap 61
                 is LR+kle++ 
  MMETSP0890-20130614|3171_1  5 EISTLREKLEQKD 17
                59*********53 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0043
                HHHHHHHHHHHHSST CS
  PF00486.23 47 dvhisrLRkkledap 61
                d  is LR+kle++ 
  MMETSP0890-20130614|3171_1 42 DEEISTLREKLEQKD 56
                5679********953 PP

>> PF12789.2  Phage tail repeat like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0051       3.1      13      37 ..       5      28 ..       3      37 .. 0.75
   2 ?    6.2   0.0     0.013       7.9      13      27 ..      44      58 ..      39      61 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0051
   PF12789.2 13 nitnLqetLnrKadkgHTHtIanIt 37
                +i  L+e+L++K ++     I ++t
  MMETSP0890-20130614|3171_1  5 EISTLREKLEQKDAVSRV-KIQELT 28
                8999*******9988754.455555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.013
   PF12789.2 13 nitnLqetLnrKadk 27
                +i  L+e+L++K ++
  MMETSP0890-20130614|3171_1 44 EISTLREKLEQKDAV 58
                799999999999876 PP

>> PF13167.1  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   4.2e-05     0.025      26      74 ..       4      52 ..       2      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.2e-05
   PF13167.1 26 eqitqnkdrvdekyyvGkGkleeikefveledidvvvvndelttaqsks 74
                e+i+  ++++++k  v + k++e+ +++  +d ++ + ++e++t + k 
  MMETSP0890-20130614|3171_1  4 EEISTLREKLEQKDAVSRVKIQELTQLLRSRDEEIRIRDEEISTLREKL 52
                578899*************************************988774 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.6   0.00012     0.073     209     266 ..       4      58 ..       1      63 [. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
   PF08317.6 209 eeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaeki 266
                 ee++ lre+L++ ++ ++  r k++el++ l++ +++i    e++s+l+e++++ + +
  MMETSP0890-20130614|3171_1   4 EEISTLREKLEQ-KDAVS--RVKIQELTQLLRSRDEEIRIRDEEISTLREKLEQKDAV 58 
                 577777777765.44566..77788888888888888888888888888877777665 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.2    0.0013      0.79       4      37 ..       3      36 ..       3      40 .. 0.78
   2 ?    6.1   0.1     0.016       9.4       4      20 ..      42      58 ..      41      64 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0013
   PF14197.1  4 eaevktLrnrldsltrkvqvheielksLnkErds 37
                ++e++tLr++l++ + + +v   el  L + rd+
  MMETSP0890-20130614|3171_1  3 DEEISTLREKLEQKDAVSRVKIQELTQLLRSRDE 36
                689********88777777777777778877776 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.016
   PF14197.1  4 eaevktLrnrldsltrk 20
                ++e++tLr++l++ + +
  MMETSP0890-20130614|3171_1 42 DEEISTLREKLEQKDAV 58
                689********664433 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.037        22     107     124 ..       2      19 ..       1      27 [. 0.80
   2 ?   10.8   0.8   0.00047      0.28      88     124 ..      22      58 ..      18      64 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.037
   PF04859.7 107 kdseieelrekleeakka 124
                 +d+ei  lrekle++ + 
  MMETSP0890-20130614|3171_1   2 RDEEISTLREKLEQKDAV 19 
                 89**********887654 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00047
   PF04859.7  88 sllktyeivvkkLeaelrakdseieelrekleeakka 124
                  ++++   +++   +e+r +d+ei  lrekle++ + 
  MMETSP0890-20130614|3171_1  22 VKIQELTQLLRSRDEEIRIRDEEISTLREKLEQKDAV 58 
                 566666777777789****************887654 PP

>> PF09902.4  Uncharacterized protein conserved in bacteria (DUF2129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.014       8.5      40      62 ..       4      26 ..       2      35 .. 0.85
   2 ?    5.8   0.1     0.017        10      38      60 ..      41      63 ..      37      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.014
   PF09902.4 40 eeveelveklkklkfVkkVelSa 62
                ee+ +l ekl++ + V++V++ +
  MMETSP0890-20130614|3171_1  4 EEISTLREKLEQKDAVSRVKIQE 26
                78999**************9865 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.017
   PF09902.4 38 neeeveelveklkklkfVkkVel 60
                 +ee+ +l ekl++ + V++V++
  MMETSP0890-20130614|3171_1 41 RDEEISTLREKLEQKDAVSRVKI 63
                67999***************986 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.8    0.0078       4.6       4      40 ..       4      40 ..       2      54 .. 0.77
   2 ?    5.4   0.1     0.037        22       4      20 ..      43      59 ..      39      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0078
   PF14357.1  4 elLekLheeLeqtdsldeetraeLkelrddieealee 40
                e++ +L+e+Leq+d+++  + +eL++l +   e ++ 
  MMETSP0890-20130614|3171_1  4 EEISTLREKLEQKDAVSRVKIQELTQLLRSRDEEIRI 40
                7899*********************998877776665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.037
   PF14357.1  4 elLekLheeLeqtdsld 20
                e++ +L+e+Leq+d+++
  MMETSP0890-20130614|3171_1 43 EEISTLREKLEQKDAVS 59
                78999********9987 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0066       3.9      63      77 ..       3      17 ..       2      19 .. 0.92
   2 ?    7.5   1.7    0.0068       4.1      57      77 ..      37      56 ..      21      58 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0066
   PF08581.5 63 eeeiarLkreLearg 77
                +eei  L+++Le+++
  MMETSP0890-20130614|3171_1  3 DEEISTLREKLEQKD 17
                79***********98 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0068
   PF08581.5 57 kikekYeeeiarLkreLearg 77
                +i+ + +eei  L+++Le+++
  MMETSP0890-20130614|3171_1 37 EIRIR-DEEISTLREKLEQKD 56
                44443.89***********98 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.6      0.04        24      39      74 .]      21      56 ..       4      56 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.04
   PF12329.3 39 rkknkelekeieelkkkleklekeleeleerlkrae 74
                r k++el++ +++ ++++   ++e++ l+e+l++++
  MMETSP0890-20130614|3171_1 21 RVKIQELTQLLRSRDEEIRIRDEEISTLREKLEQKD 56
                789999999999999999999999999999999885 PP

>> PF08860.5  Domain of unknown function (DUF1827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3      0.02        12      57      85 ..       2      30 ..       1      35 [. 0.87
   2 ?    7.9   0.6    0.0048       2.9      53      79 ..      37      63 ..      31      65 .] 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.02
   PF08860.5 57 kdaEiefvlekllkrtdkadlkilkaakl 85
                +d+Ei + +ekl +++  + +ki + ++l
  MMETSP0890-20130614|3171_1  2 RDEEISTLREKLEQKDAVSRVKIQELTQL 30
                79***********9999999999887765 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0048
   PF08860.5 53 kRaikdaEiefvlekllkrtdkadlki 79
                + +i+d+Ei + +ekl +++  + +ki
  MMETSP0890-20130614|3171_1 37 EIRIRDEEISTLREKLEQKDAVSRVKI 63
                558*************99987777776 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.1    0.0012      0.72      60     113 ..       4      57 ..       2      64 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0012
   PF12072.3  60 eeihklreelEkelkerrkelqrqEkRllqkeetLdrkeeslekkeekleekek 113
                 eei +lre+lE+     r ++q++ + l+ ++e++  ++e+++   ekle+k++
  MMETSP0890-20130614|3171_1   4 EEISTLREKLEQKDAVSRVKIQELTQLLRSRDEEIRIRDEEISTLREKLEQKDA 57 
                 89*************************************************986 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.3    0.0016      0.97       7      53 ..      11      57 ..       5      64 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0016
   PF04102.7  7 eeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkelee 53
                e+LE k a     i+eL + +   ++ei+   ++++ l+e+l++ ++
  MMETSP0890-20130614|3171_1 11 EKLEQKDAVSRVKIQELTQLLRSRDEEIRIRDEEISTLREKLEQKDA 57
                6799999999999******************************9774 PP

>> PF03735.9  ENT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.5   8.8e+02      58      69 ..       3      14 ..       1      17 [. 0.71
   2 ?    8.9   3.5    0.0018       1.1      23      65 ..      15      62 ..       6      65 .] 0.92

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.5
   PF03735.9 58 derlravrecia 69
                de+++++re ++
  MMETSP0890-20130614|3171_1  3 DEEISTLREKLE 14
                888888888765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0018
   PF03735.9 23 qgd.LSwekekllteLr....kelsIsdeeHrallrrvesderlravr 65
                q d  S+ k + lt+L     +e++I dee  +l+++ e+ + +++v+
  MMETSP0890-20130614|3171_1 15 QKDaVSRVKIQELTQLLrsrdEEIRIRDEEISTLREKLEQKDAVSRVK 62
                667799*********9989999***********************997 PP

>> PF06102.7  Domain of unknown function (DUF947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.5    0.0026       1.5      61     118 ..       2      56 ..       1      64 [. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0026
   PF06102.7  61 rekEikelkkklkkkkadeeekeelkkklqslksrlktlkkkeeerevlkelkkqeke 118
                 r++Ei++l++kl++k+  +  + ++++  q l+sr+++   ++ee  +l+e  +q k+
  MMETSP0890-20130614|3171_1   2 RDEEISTLREKLEQKD--AVSRVKIQELTQLLRSRDEEIRIRDEEISTLREKLEQ-KD 56 
                 899**********998..7888888888888999999999988888888874333.44 PP

>> PF08312.7  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.2      0.05        30      13      44 ..       6      55 ..       3      57 .. 0.77
   2 ?    4.2   0.2     0.061        36      13      24 ..      45      56 ..      44      64 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.05
   PF08312.7 13 vlelrdrLEeeg...............lseeeI...eervdklRekLlke 44
                ++ lr++LE ++               + +eeI   +e++  lRekL+++
  MMETSP0890-20130614|3171_1  6 ISTLREKLEQKDavsrvkiqeltqllrSRDEEIrirDEEISTLREKLEQK 55
                6789******9988889999999998547777744445678888888876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.061
   PF08312.7 13 vlelrdrLEeeg 24
                ++ lr++LE ++
  MMETSP0890-20130614|3171_1 45 ISTLREKLEQKD 56
                456777777655 PP

>> PF10779.4  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.6    0.0057       3.4      16      43 ..       4      31 ..       1      39 [. 0.88
   2 ?    5.4   0.7     0.026        15       6      36 ..      33      63 ..      28      65 .] 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0057
   PF10779.4 16 keeekaenalEkadaalekqiknlnkdL 43
                +e+++  ++lE++da+  ++i++l++ L
  MMETSP0890-20130614|3171_1  4 EEISTLREKLEQKDAVSRVKIQELTQLL 31
                67899999***************99877 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.026
   PF10779.4  6 erlnrietklkeeekaenalEkadaalekqi 36
                 r ++i  + +e+++  ++lE++da+  ++i
  MMETSP0890-20130614|3171_1 33 SRDEEIRIRDEEISTLREKLEQKDAVSRVKI 63
                5557788888999************998887 PP

>> PF11629.3  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.57   3.4e+02      26      38 ..       4      16 ..       3      17 .. 0.84
   2 ?    9.2   2.3    0.0015       0.9       3      38 ..      17      55 ..      15      56 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.57
   PF11629.3 26 rEieelrkrYqaK 38
                +Ei  lr++ ++K
  MMETSP0890-20130614|3171_1  4 EEISTLREKLEQK 16
                7999999998887 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0015
   PF11629.3  3 efLkslsveeLeqrlasLDpem...ErEieelrkrYqaK 38
                ++++++ ++eL+q l s D+e+   ++Ei  lr++ ++K
  MMETSP0890-20130614|3171_1 17 DAVSRVKIQELTQLLRSRDEEIrirDEEISTLREKLEQK 55
                688999***************966679*******98888 PP

>> PF04394.9  Protein of unknown function, DUF536
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.1     0.053        31       1      19 [.       9      31 ..       2      31 .. 0.86
   2 ?    8.1   0.7    0.0032       1.9       2      21 ..      35      54 ..      34      56 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.053
   PF04394.9  1 ldeQlekkd....kqieelqkLL 19
                l+e le+kd    ++i+el +LL
  MMETSP0890-20130614|3171_1  9 LREKLEQKDavsrVKIQELTQLL 31
                67888999999999999999887 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0032
   PF04394.9  2 deQlekkdkqieelqkLLDQ 21
                de++++ d++i++l + L+Q
  MMETSP0890-20130614|3171_1 35 DEEIRIRDEEISTLREKLEQ 54
                9*************999999 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.1    0.0046       2.7      60     104 ..      12      56 ..       2      64 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0046
   PF10186.4  60 qlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrr 104
                 +l  + a ++ +i+++ + ++   eei+ + e+i++l+e+l+q+ 
  MMETSP0890-20130614|3171_1  12 KLEQKDAVSRVKIQELTQLLRSRDEEIRIRDEEISTLREKLEQKD 56 
                 556667778888999999999999999999999999999999875 PP

>> PF04568.7  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.7     0.013       7.6      71      97 ..       3      29 ..       1      32 [. 0.87
   2 ?    4.3   0.4      0.06        36      70      91 ..      41      62 ..      31      65 .] 0.71

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.013
   PF04568.7 71 keqLakLkekleeeikhhkkeieelee 97
                +e ++ L+ekle++ +  + +i+el +
  MMETSP0890-20130614|3171_1  3 DEEISTLREKLEQKDAVSRVKIQELTQ 29
                78999********99999999999976 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.06
   PF04568.7 70 ekeqLakLkekleeeikhhkke 91
                ++e ++ L+ekle++ +  + +
  MMETSP0890-20130614|3171_1 41 RDEEISTLREKLEQKDAVSRVK 62
                4678899999999966555555 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   6.6      0.51     3e+02      34      72 ..      21      56 ..       3      61 .. 0.50

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.51
   PF07544.8 34 khrlqkaraaveelpdisrsveeqeaeIeeleeqiarkr 72
                + ++q++ +++++    ++ +  + +eI  l+e++++k 
  MMETSP0890-20130614|3171_1 21 RVKIQELTQLLRS---RDEEIRIRDEEISTLREKLEQKD 56
                3344444444444...33444445666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       911  (0.0666325); expected 273.4 (0.02)
Passed bias filter:                      612  (0.044763); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.89
# Mc/sec: 175.01
//
Query:       MMETSP0890-20130614|3178_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 156.28
//
Query:       MMETSP0890-20130614|3180_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-10   38.7   0.0    6.6e-10   38.6   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
     0.0039   16.8   0.0       0.01   15.4   0.0    1.6  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   9.6e-14   6.6e-10      24      66 ..       8      50 ..       2      53 .] 0.43

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 9.6e-14
   PF13306.1 24 tsIgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
                t++ ++ F++c+++  + lp  lt+ig+ aF +c+sl +it+p
  MMETSP0890-20130614|3180_1  8 TTLPDEIFAGCHNIIFVALPAGLTTIGDAAFRGCTSLAQITLP 50
                4444444444444444444444444444444444444444444 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-06      0.01      14      56 ..       8      49 ..       6      51 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.5e-06
   PF13855.1 14 kvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                +++pd++F g++n     L    l++i + af g++sL ++ L
  MMETSP0890-20130614|3180_1  8 TTLPDEIFAGCHNIIFVALP-AGLTTIGDAAFRGCTSLAQITL 49
                6899****************.*****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        98  (0.00716793); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.42s 00:00:00.68 Elapsed: 00:00:00.91
# Mc/sec: 139.57
//
Query:       MMETSP0890-20130614|3211_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-14   50.6   0.8    7.8e-10   38.1   0.2    2.3  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   5.7e-14   7.8e-10       1      39 []       7      46 ..       7      46 .. 0.96
   2 !   10.9   0.0   2.1e-05      0.29      16      38 ..      71      93 ..      70      94 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 5.7e-14
                TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                g+++++++g t++V c  fsp+ g+++as + D+tir+W+
  MMETSP0890-20130614|3211_1  7 GTQLRVFSGATDTVICAEFSPNdGTFFASVGVDCTIRIWH 46
                57899**********************************6 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.1e-05
                EEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27 16 cvafspdgpllasgSrDgtirlW 38
                ++a+spdg+++a+g +Dg+  +W
  MMETSP0890-20130614|3211_1 71 DLAYSPDGTVIACGLYDGNNEIW 93
                799***************97777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.79
# Mc/sec: 315.47
//
Query:       MMETSP0890-20130614|3209_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-36  123.8   0.0    3.9e-36  123.4   0.0    1.2  1  PF07977.8  FabA-like domain
  ------ inclusion threshold ------
      0.074   12.3   0.0       0.24   10.6   0.0    1.9  2  PF01575.14 MaoC like domain


Domain annotation for each model (and alignments):
>> PF07977.8  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   5.8e-40   3.9e-36       1     138 []      64     190 ..      64     190 .. 0.96

  Alignments for each domain:
  == domain 1    score: 123.4 bits;  conditional E-value: 5.8e-40
   PF07977.8   1 lphryplllldrvleieeeggkagGlivaeknvtpnewfFqgHFpgdpvmPGvLivealaQlvgfyllksgleegkgrarklvlfagidevkfrgqvtPgdkqlrleveikkvserrlvigiadaralvdgklvyeae 138
                 lphryp+ l+d+v+e+e  g++    +v++k vt+ne+ F+gHFp++p+mPGvL vealaQl+g+++l+ ++ ++ g    +++fag+d vk++++v+Pgd +l++evei    +++  i++a++ra+vdg+l++e++
  MMETSP0890-20130614|3209_1  64 LPHRYPFALVDKVVEYE-AGKR----AVGIKCVTFNEPQFTGHFPDRPIMPGVLQVEALAQLAGVVCLQMEG-ADPG---SVFFFAGVDGVKWKRPVVPGD-TLVMEVEILT-WKAKFGIAKASGRAYVDGNLAIEVK 190
                 8****************.9999....*******************************************966.6666...799******************.**********.999*****************99975 PP

>> PF01575.14  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.17   1.2e+03      59      86 ..      70      99 ..      67     103 .. 0.69
   2 ?   10.6   0.0   3.6e-05      0.24      74     108 ..     136     170 ..     100     184 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.17
                HHHHHHHHHHHHSTT..EGGGEEEEEEEE- CS
  PF01575.14 59 laivralveeqladn..vvarlgewkvrFt 86
                +a+v ++ve +++++   +  +++++ +Ft
  MMETSP0890-20130614|3209_1 70 FALVDKVVEYEAGKRavGIKCVTFNEPQFT 99
                688999999999997544455555555555 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 3.6e-05
                 EGGGEEEEEEEE-S--BSS-EEEEEEEEECCEEEE CS
  PF01575.14  74 vvarlgewkvrFtkpVlpgdtlrvevevvgkrdgk 108
                 v  + g + v+  +pV pgdtl +eve    + ++
  MMETSP0890-20130614|3209_1 136 VFFFAGVDGVKWKRPVVPGDTLVMEVEILTWKAKF 170
                 66677788899***************987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 729.97
//
Query:       MMETSP0890-20130614|3218_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 504.50
//
Query:       MMETSP0890-20130614|3215_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-22   77.6   0.0    1.5e-21   76.5   0.0    1.6  1  PF08241.7  Methyltransferase domain
      3e-18   65.6   0.0    9.1e-18   64.0   0.0    1.7  2  PF01209.13 ubiE/COQ5 methyltransferase family
    4.3e-17   61.9   0.0    6.6e-17   61.3   0.0    1.3  1  PF13847.1  Methyltransferase domain
    1.9e-16   60.0   0.0    2.9e-16   59.4   0.0    1.2  1  PF13489.1  Methyltransferase domain
    1.3e-15   57.4   0.0    2.5e-15   56.5   0.0    1.5  1  PF13649.1  Methyltransferase domain
    8.2e-14   51.7   0.0    1.5e-13   50.8   0.0    1.5  1  PF08242.7  Methyltransferase domain
    1.5e-13   51.2   0.0    3.3e-13   50.0   0.0    1.6  1  PF12847.2  Methyltransferase domain
    2.3e-06   27.5   0.1    6.1e-06   26.1   0.0    1.7  1  PF13659.1  Methyltransferase domain
    6.9e-05   22.7   0.0    0.00013   21.8   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase
    0.00016   21.3   0.0     0.0031   17.0   0.0    2.1  2  PF05148.10 Hypothetical methyltransferase
  ------ inclusion threshold ------
      0.029   13.1   0.0      0.043   12.5   0.0    1.2  1  PF03291.11 mRNA capping enzyme
      0.031   13.5   0.0      0.057   12.7   0.0    1.4  1  PF05175.9  Methyltransferase small domain
       0.05   14.3   0.0       0.13   12.9   0.0    1.7  1  PF13578.1  Methyltransferase domain
      0.068   11.3   0.0       0.17   10.0   0.0    1.5  1  PF03141.11 Putative S-adenosyl-L-methionine-dependent methyltransferase
       0.07   12.0   0.0       0.22   10.4   0.0    1.7  2  PF02390.12 Putative methyltransferase
      0.078   12.3   0.0       0.12   11.7   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.8e-24   1.5e-21       1      94 [.     163     268 ..     163     269 .. 0.95

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.8e-24
   PF08241.7   1 LdvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle..........lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                 Ld+ cGtgl+++ + ++  p  r+++ D+se+ml +a++r +++  +          +++ d+ +lpf+dns+D++ + ++l++ +d+e+alkei RvLkp+G ++
  MMETSP0890-20130614|3215_1 163 LDLSCGTGLFTRRIFTAtpPTTRLIAADYSEAMLLEANRRFRQSFGNkqqqtshnidFIRVDVAHLPFADNSIDAIHCGAALHCYPDVEAALKEIFRVLKPDGAFF 268
                 89**********999999*****************99999988866678899999************************************************997 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.1e-20   9.1e-18      45     156 ..     156     274 ..     144     291 .. 0.88
   2 ?   -1.6   0.0       1.3   1.1e+03     198     220 ..     301     323 ..     296     332 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 1.1e-20
  PF01209.13  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkee.gki......nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefsk 156
                 + + ++vlD+++Gtg ++ ++  +   + +++ +D++e mL +++++ +++ g +      ni+f+  +  +Lpf d+s D +  +  l   +D + aLke++rvlkp G+++   f k
  MMETSP0890-20130614|3215_1 156 EETEKTVLDLSCGTGLFTRRIFTATPPTTRLIAADYSEAMLLEANRRFRQSfGNKqqqtshNIDFIRVDVAHLPFADNSIDAIHCGAALHCYPDVEAALKEIFRVLKPDGAFFATTFLK 274
                 566789****************************************987642332455567**************************************************99877765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.3
  PF01209.13 198 fPdqetlkeliedaGfksveyes 220
                 f   ++l++l ++a f  v+ ++
  MMETSP0890-20130614|3215_1 301 FFSLDELEQLTREAAFADVHVRR 323
                 566799**********9998665 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   7.7e-20   6.6e-17       4     110 ..     159     271 ..     156     289 .. 0.94

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 7.7e-20
   PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke.......raqklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlives 110
                 +++vlDl CGtG ++++++    p  +++  D+se ++  A++       + q++   n+ Fi+ d+ +l+  ++ +s+D + + ++l++ +d +++lkei+rvlkp+g++++++
  MMETSP0890-20130614|3215_1 159 EKTVLDLSCGTGLFTRRIFTATPPTTRLIAADYSEAMLLEANRrfrqsfgNKQQQTSHNIDFIRVDVAHLP--FAdNSIDAIHCGAALHCYPDVEAALKEIFRVLKPDGAFFATT 271
                 689****************98889999****************999999999999999*************..*************************************99876 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   3.4e-19   2.9e-16      14     161 ..     150     320 ..     141     321 .. 0.72

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 3.4e-19
   PF13489.1  14 erllarlkpggrvLDiGcGtGillell..aengf.dvtgvDpspaaigk..akqaqksqfdeedaae.................pagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas.....lasdeafakw.dylvprgthisffsaeslkelleeaGfeive 161
                 +++++ +++ ++vLD+ cGtG +++ +  a+ +  ++++ D s+a+  +  +   + ++f  +++++                  +++ d i++   l+  pd+e++l++i++ lkp+G ++ +t+++       +s +++++     ++  t  +ffs ++l++l +ea f +v+
  MMETSP0890-20130614|3215_1 150 KEFAQIEETEKTVLDLSCGTGLFTRRIftATPPTtRLIAADYSEAMLLEanR--RFRQSF-GNKQQQtshnidfirvdvahlpfADNSIDAIHCGAALHCYPDVEAALKEIFRVLKPDGAFFATTFLKGamgtaTSSSSSALSFfPQRRD--TGFRFFSLDELEQLTREAAFADVH 320
                 4456668999***************9975444446899****9888877552..333333.33333322233333333333333777***************************************988887763333333333133444..999**************9998875 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.9e-18   2.5e-15       1     101 []     162     265 ..     162     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 2.9e-18
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss.....kgl....kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                 +ldl CG+G  +r++ +a    p+ r+i+ D+se +l +a++r+++     +      +++f+  d+ +lpf+++++d++ c g+ l+ +   + ea+l+ei+rvlkp+G
  MMETSP0890-20130614|3215_1 162 VLDLSCGTGLFTRRIFTAT--PPTTRLIAADYSEAMLLEANRRFRQsfgnkQ-QqtshNIDFIRVDVAHLPFADNSIDAIHC-GAALHCYP--DVEAALKEIFRVLKPDG 265
                 79**********9999886..4569****************99987766541.15678************************.99787765..799************98 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.8e-16   1.5e-13       1      98 [.     163     266 ..     163     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 1.8e-16
   PF08242.7   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg......ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 L++ cGtG ++r++  ++ p+ ++++ D+s++++ +a +++++    n ++ +  ++d +  d        +s D++++  +lh+ +d++++l++i ++Lkp+G 
  MMETSP0890-20130614|3215_1 163 LDLSCGTGLFTRRIFTATpPTTRLIAADYSEAMLLEANRRFRQS-FGNKQQQTSHNIDFIRVDVAhlpfadNSIDAIHCGAALHCYPDVEAALKEIFRVLKPDGA 266
                 89****************9999************5555555543.33444444444444444444455669********************************96 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   3.9e-16   3.3e-13       2     111 ..     159     271 ..     158     272 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 3.9e-16
   PF12847.2   2 gkrilDlGcGtGslslelar.lrpgakvvgvDpseeslelarena......ksldleeriellqgdakeelsller.fDavllkgltldallal.deprrvlealpkllkpggrlvies 111
                 +k++lDl cGtG+++  +     p  ++++ D+se++l  a+++       k+++ +++i++++ d+  +l + ++ +Da+ ++      +l+  ++++++l+++ + lkp+g ++ ++
  MMETSP0890-20130614|3215_1 159 EKTVLDLSCGTGLFTRRIFTaTPPTTRLIAADYSEAMLLEANRRFrqsfgnKQQQTSHNIDFIRVDV-AHLPFADNsIDAIHCGA-----ALHCyPDVEAALKEIFRVLKPDGAFFATT 271
                 689************887775668889******************999998779999*******999.55555555699999988.....55555777****************99886 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   7.1e-09   6.1e-06       2     113 ..     160     269 ..     159     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 7.1e-09
   PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlar......aglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvl 113
                  +vld++cG+G f+   + +   + +l++++ +++ +  a+r++++       + ++++++++ d+++l+  + ++s d++ +    +          ++++a+l++++r+lkp+G++  
  MMETSP0890-20130614|3215_1 160 KTVLDLSCGTGLFTRRIFTATppTTRLIAADYSEAMLLEANRRFRQsfgnkqQQTSHNIDFIRVDVAHLP--FADNSIDAIHCGAALHCY--------PDVEAALKEIFRVLKPDGAFFA 269
                 58******************9999***********99999999888555544445788***********9..99********98887643........5789**************9976 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.6e-07   0.00013      15     142 ..     151     285 ..     144     327 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.6e-07
  PF01728.14  15 kfkllkvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttlqgditdp..stqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlilaalklalellkpggnfvlklfk...........g 142
                 +f  +++  +ktv+Dl +++G ++  +   + ++++++a D  ++  l+  +  ++ + ++  +t  +i    ++    ++l  +D   ++  +h   +      ++aalk ++++lkp+g f + +f            +
  MMETSP0890-20130614|3215_1 151 EFAQIEE-TEKTVLDLSCGTGLFTRRIFTATPPTTRLIAADYSEAMLLEANRRFRQSFGNKqqQTSHNIDFIRVD---VAHLPFADN--SIDAIHCGAALHCYPDVEAALKEIFRVLKPDGAFFATTFLkgamgtatsssS 285
                 4444555.68***********************************999999999999977733333344443333...566666666..444444444555567889999988899*******999998777776665541 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.15   1.3e+02      30      84 ..     113     170 ..      99     180 .. 0.71
   2 !   17.0   0.0   3.7e-06    0.0031     103     155 ..     215     268 ..     192     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.15
  PF05148.10  30 avdlfkedpeafdlyhkgfrsq.vkk.W..PenPldviirklkkkkdnlvvadlGcGea 84 
                 +v+ f+   +af ly +g+r+  v++ +  P +   ++ +  +  + +++v dl cG  
  MMETSP0890-20130614|3215_1 113 KVQTFRSPLTAF-LYERGWRDSfVRNgFpgPDQEFAEFKEFAQIEETEKTVLDLSCGTG 170
                 556676666666.8999998762433233367778888888889999**********75 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.7e-06
  PF05148.10 103 avnervvacdlakvPledesvdvavfclslmg.tnladflkeanrvlkvGGllk 155
                 + n + +  d+a++P +d+s+d + +  +l    +++  lke+ rvlk+ G ++
  MMETSP0890-20130614|3215_1 215 SHNIDFIRVDVAHLPFADNSIDAIHCGAALHCyPDVEAALKEIFRVLKPDGAFF 268
                 556678899*************7666667754269**************99875 PP

>> PF03291.11  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-05     0.043      60     126 ..     155     224 ..     146     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-05
  PF03291.11  60 aeknkrkvLdldcGkGgDLeKyekgg..IsklvgtDidessieeaqeRY.kklnsrskskkykfdfeaef 126
                  e+ +++vLdl cG G   ++ + +     +l+++D +e+ + ea++R+ ++  +++++++ ++df+ + 
  MMETSP0890-20130614|3215_1 155 IEETEKTVLDLSCGTGLFTRRIFTATppTTRLIAADYSEAMLLEANRRFrQSFGNKQQQTSHNIDFIRVD 224
                 455899***************9999744799******************666667777788888887665 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.6e-05     0.057      31     110 ..     158     246 ..     151     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.6e-05
                 ------B-------HHHHHHHH-TT--.--EEESBHHHHHHHHHHHHH----........--EEE-STTTT--..--BS-EEE------ CS
   PF05175.9  31 lagkvlDlGcGaGvlgaalakespele.vtlvDinarAvesakanleanklen.......vevlasdlleeve.ekkfdlivsNPPfha 110
                 ++++vlDl cG+G+ +  +  ++p ++ + + D +++ +  a++ +++   ++       ++++  d+ +    ++++d+i +   +h 
  MMETSP0890-20130614|3215_1 158 TEKTVLDLSCGTGLFTRRIFTATPPTTrLIAADYSEAMLLEANRRFRQSFGNKqqqtshnIDFIRVDVAHLPFaDNSIDAIHCGAALHC 246
                 6778************9999888877769999*99988888777665432222110112477777777765554777777776666665 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00015      0.13       3     101 ..     167     267 ..     165     269 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00015
   PF13578.1   3 iGvysGvstlvllqalkrngagrlysvdpdpg.....aeeaaalaee......agladrvrllkgdseealasladgsiDllfiDg.ghaaeavladleallprlapggvv 101
                 +G   G +t+ +  a   +   rl++ d  +      +   ++ +++      ++ ++++ +++ d  ++   +ad siD +++ +  h + +v a+l++++++l+p+g +
  MMETSP0890-20130614|3215_1 167 CG--TGLFTRRIFTATPPTT--RLIAADYSEAmlleaN---RR-FRQsfgnkqQQTSHNIDFIRVDVAHL--PFADNSIDAIHCGAaLHCYPDVEAALKEIFRVLKPDGAF 267
                 77..8999999999888887..6999999886653321...22.33233334566666777777777666..45578*******985788******************986 PP

>> PF03141.11  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0002      0.17     171     216 ..     224     268 ..     143     277 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
  PF03141.11 171 gtkrlpyPsraFdlahCsrClipwteedgilllevdRvlRpgGyfv 216
                    +lp+  ++ d +hC+  l  +   +   l e+ Rvl+p+G f 
  MMETSP0890-20130614|3215_1 224 DVAHLPFADNSIDAIHCGAALHCYPDVE-AALKEIFRVLKPDGAFF 268
                 5578**************9998888775.679**********9775 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.22      12      92 ..     152     236 ..     141     249 .. 0.77
   2 ?   -1.7   0.0       1.3   1.1e+03     117     135 ..     253     271 ..     251     277 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
                 -TTTSGGGB-EEEE--------HHHHHHH-.TTSEEE---S-HHHHHHHHHHHHHH.......--TTB------HHHHHHHHS----BS CS
  PF02390.12  12 wkklfeneqklvleIGfGsGdflvalAkkn.PdklflGiEirqkvvekvlkkieal.......glkNlrilegdaekvleslfadnsle 92 
                 ++++ e  +k+vl++ +G G f+ ++ ++  P++  ++ + +++++ +++++ +++         +N+  +++d     +  fadns++
  MMETSP0890-20130614|3215_1 152 FAQIEE-TEKTVLDLSCGTGLFTRRIFTATpPTTRLIAADYSEAMLLEANRRFRQSfgnkqqqTSHNIDFIRVDVA---HLPFADNSID 236
                 334444.444*************9986655178899*******************99999999999*****97643...3445555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.3
                 HHHHHHHHB-----EEEEE CS
  PF02390.12 117 llkelarvLkkgGvlelaT 135
                  lke+ rvLk+ G + + T
  MMETSP0890-20130614|3215_1 253 ALKEIFRVLKPDGAFFATT 271
                 6999*********998776 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.12      63     156 ..     147     248 ..     143     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
                 HHHHHHTT--TT-E.EEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--.......SEEEE--------GGG--BSEEEESSB-SS-- CS
  PF01135.14  63 alalellelkkgar.vLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.......nvivvvgDGrkGyeekaPYdaihvgaaapeiP 156
                 a + e+ ++++ ++ vL++ +G+G  t  + +   +++r+++ ++++ +  ea+r+ +++  +       n+ ++  D  +   +    daih gaa +  P
  MMETSP0890-20130614|3215_1 147 AEFKEFAQIEETEKtVLDLSCGTGLFTRRIFTATPPTTRLIAADYSEAMLLEANRRFRQSFGNkqqqtshNIDFIRVDVAHLPFADNSIDAIHCGAALHCYP 248
                 6677888877665439************9999************************9987554466778899999988765544445589999999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:00.76
# Mc/sec: 1232.86
//
Query:       MMETSP0890-20130614|3219_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-11   41.5   1.7    2.7e-05   23.9   1.3    2.3  2  PF00249.26 Myb-like DNA-binding domain
    9.8e-11   41.4   0.4    1.5e-05   24.9   0.2    2.5  2  PF13921.1  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.022   14.2   0.4      0.032   13.7   0.3    1.2  1  PF04702.7  Vicilin N terminal region


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.3     6e-09   2.7e-05       2      46 ..      44      88 ..      43      90 .. 0.95
   2 !   15.2   0.0   3.2e-06     0.014      17      46 ..     116     148 ..     110     150 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 6e-09
                TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHH CS
  PF00249.26  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                ++W ++Ed +l+ a +++   +W+ Ia+++g +R   qc  rw +
  MMETSP0890-20130614|3219_1 44 QKWEAWEDTRLIVAAHRYARCQWRFIAKEIGHHRNHMQCLQRWKS 88
                79*****************************99**********75 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 3.2e-06
                 HHTTS-.....HHHHHHHCTTTS-HHHHHHHHHH CS
  PF00249.26  17 kqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                 k  Gg     +Wk Ia++++  R++  + ++w++
  MMETSP0890-20130614|3219_1 116 KINGGTisklNWKEIAALLP-FRSGPAVEEYWYN 148
                 55676788889*********.************8 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   3.2e-09   1.5e-05       1      56 [.      46     103 ..      46     107 .. 0.86
   2 !   15.1   0.0   3.6e-06     0.016      18      44 ..     120     151 ..      99     196 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.2e-09
   PF13921.1   1 WtdeEdeiLlklveeygn.dWseIaeelg.rRtplacqdrwknkLrpkisrapwtkee 56 
                 W + Ed +L+    +y + +W+ Ia+e+g +R + +c +rwk+ + p + ++++t+++
  MMETSP0890-20130614|3219_1  46 WEAWEDTRLIVAAHRYARcQWRFIAKEIGhHRNHMQCLQRWKSIVEPALMDEAFTEAD 103
                 7777999998888888778*********77*************778988888888875 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.6e-06
   PF13921.1  18 n.....dWseIaeelgrRtplacqdrwknkLr 44 
                       +W+eIa  l +R+  a+ + w+n+L 
  MMETSP0890-20130614|3219_1 120 GtisklNWKEIAALLPFRSGPAVEEYWYNELA 151
                 3344469**********************883 PP

>> PF04702.7  Vicilin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3     7e-06     0.032      15      82 ..      17      87 ..       6      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7e-06
   PF04702.7 15 dCrrrCeleergereqqkCeerckeqlkeeeeqqrqreedpqrryeecqercqree...erkrqtcqqrce 82
                d  +r  + ++++ e ++Ce++ k + +  e  +  r     +ry  cq r   +e   +r++ +c qr +
  MMETSP0890-20130614|3219_1 17 DQSKRSFHVTSNNSENDQCEKSVKFEPQKWEAWEDTRLIVAAHRYARCQWRFIAKEighHRNHMQCLQRWK 87
                556788888999************999999999889999999*********99999877788888988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.92
# Mc/sec: 580.86
//
Query:       MMETSP0890-20130614|3229_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.069   12.5   2.2       0.11   11.8   1.5    1.3  1  PF02361.11 Cobalt transport protein
       0.09   12.3   1.0        1.6    8.3   0.2    2.3  2  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
       0.22   10.7   4.9       0.39    9.9   3.4    1.3  1  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF02361.11  Cobalt transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.5   2.5e-05      0.11      19     114 ..     109     215 ..     102     220 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.5e-05
  PF02361.11  19 llvllvflpigfvflsvifllvlfvfliaklp...........saiksitlllllllfvlwfifllfg.....nyqdnvfsgvfvfnrgnlylirswGllravllalrvttl 114
                 +l++++++  g++f+ +i  l+ f+ ++ k p             +  +     l++f++ f f++++     ++ d    + f+f+r++   ++++ +++ v l ++v+ +
  MMETSP0890-20130614|3229_1 109 VLIVVLVIFFGTIFICIIYGLYSFCAGGCKYPdlgsvgsivyyDERRGQCFG--LIIFFTIFCFVTLAltylsASDDPEMVQAFAFARIQ---MTDDSTFITVGLSGYVVVS 215
                 56666677778888889999999999999999**999966655333334444..444444444444445588888899999********9...************9999865 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00035       1.6      46     117 ..      85     178 ..      56     221 .. 0.71
   2 ?    2.4   0.0     0.021        97      79     107 ..     266     294 ..     241     296 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00035
   PF13903.1  46 wricfllevdvenesatalldltrvvivflllglvlillaavlallaslkksk......................tlllltgvllllagilill 117
                 + +c ++ +d +n+++   + + +v iv+l++ +++i++ ++ +l++++ + +                       l+ ++++  +++ +l+ l
  MMETSP0890-20130614|3229_1  85 NTCCEVDRRDGNNDDDGLTRVEEIVLIVVLVIFFGTIFICIIYGLYSFCAGGCkypdlgsvgsivyyderrgqcfGLIIFFTIFCFVTLALTYL 178
                 6799999999999998888888888888888888999999999999999999888889889888888887666554444444444444444444 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.021
   PF13903.1  79 lvlillaavlallaslkksktlllltgvl 107
                 +v +++aa++ l +++++ ++l++l+gv 
  MMETSP0890-20130614|3229_1 266 IVKVFCAAFVYLRNNPNTDQALYKLAGVF 294
                 56689********************9986 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.4   8.6e-05      0.39      14      36 .]      10      32 ..       8      34 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.6e-05
   PF04886.7 14 PTgqPtaqPTdqPtaqPtdaPta 36
                PT  Pt+ PT+ Pt   t+aPta
  MMETSP0890-20130614|3229_1 10 PTPIPTPIPTALPTGLLTAAPTA 32
                45555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.90
# Mc/sec: 793.46
//
Query:       MMETSP0890-20130614|3230_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-30  104.2   0.0    2.6e-30  103.9   0.0    1.1  1  PF01035.15 6-O-methylguanine DNA methyltransferase, DNA binding domain


Domain annotation for each model (and alignments):
>> PF01035.15  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   1.9e-34   2.6e-30       1      82 [.      68     149 ..      68     152 .. 0.97

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 1.9e-34
                 -SHHHHHHHHHHHS-----EEHHHHHHH---TTTTTT---------SBTTB-SSSEE-------------HHHHHHHHH--- CS
  PF01035.15   1 tefqervlealreIpyGrvttYgeiAkalgkpkaaraVgralaanplalivPchRVvradgklggyagglerkkelleeEgv 82 
                 tefq++v++al +Ip+G++ +Yg+iAka++kp a+raVg+a+++np++l++PchRV++++g+lg+y++g+e k+ ll eE++
  MMETSP0890-20130614|3230_1  68 TEFQKSVWDALLQIPKGSTCSYGDIAKAIQKPAASRAVGSAVGENPISLLIPCHRVLQSTGALGNYGWGVEVKEMLLCEENA 149
                 79***************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:01.04
# Mc/sec: 354.85
//
Query:       MMETSP0890-20130614|3231_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.64
# Mc/sec: 190.96
//
Query:       MMETSP0890-20130614|3228_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   17.1  21.2      0.012   15.3   9.8    2.4  2  PF00170.16 bZIP transcription factor
     0.0038   16.9   1.1      0.008   15.8   0.7    1.7  1  PF04740.7  LXG domain of WXG superfamily
  ------ inclusion threshold ------
      0.031   13.7  13.4      0.045   13.2   9.3    1.2  1  PF04156.9  IncA protein
       0.45    9.5   9.1       0.61    9.1   6.3    1.2  1  PF13851.1  Growth-arrest specific micro-tubule binding
       0.48   10.2  16.5      0.069   12.9   8.8    1.5  2  PF11559.3  Afadin- and alpha -actinin-Binding
       0.76   10.0   5.3       0.18   12.0   1.1    1.8  2  PF06156.8  Protein of unknown function (DUF972)
        1.4    8.1  13.9       0.51    9.5   6.1    2.0  2  PF11180.3  Protein of unknown function (DUF2968)
        1.6    7.5  10.8        2.2    7.0   7.5    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        3.6    7.6  13.2        1.1    9.2   6.0    2.3  2  PF13747.1  Domain of unknown function (DUF4164)
        6.6    6.5  23.3        2.4    7.9  10.9    2.6  2  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   9.8   9.1e-06     0.012       4      61 ..     180     237 ..     177     240 .. 0.77
   2 ?    5.4   1.7     0.012        16      24      58 ..     235     269 ..     233     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.1e-06
                 XCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
  PF00170.16   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 ++  +r+++NRe Ar sR+RK++eie L e   +L +  ++   ++ +l++ +ak+++
  MMETSP0890-20130614|3228_1 180 IRDRIRRERNREYARQSRARKRKEIEALHEFESTLRESLTKAERQVCTLQEGYAKVQQ 237
                 67789***********************997777766666666666666666666665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHH.......HHHHHHHHH CS
  PF00170.16  24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                  ++e+ee ++ +  Le+e  +L++++ + +   ++
  MMETSP0890-20130614|3228_1 235 VQQELEETRQACSLLEQEHAKLRERITRSEYDNSR 269
                 599***********************998876665 PP

>> PF04740.7  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7   5.8e-06     0.008     143     193 ..     189     239 ..     149     252 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.8e-06
   PF04740.7 143 fkeqlqkakkkiedtlekLeefDqeltsllaelealikeieqlvselqsat 193
                  +e +++++   ++ +e+L+ef+  l++ l+++e+++ +++ +++++q+ +
  MMETSP0890-20130614|3228_1 189 NREYARQSRARKRKEIEALHEFESTLRESLTKAERQVCTLQEGYAKVQQEL 239
                 5677888888899***********************************987 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   9.3   3.3e-05     0.045      88     173 ..     175     259 ..     170     272 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-05
   PF04156.9  88 sqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqed 173
                 ++ +++ + + ++++r ++ +s+ ++ +e + l++ +++ l+e+l ++e++++ l++ ++++++e+++ ++++  l++e ++l+e+
  MMETSP0890-20130614|3228_1 175 AREAMIRDRIRRERNREYARQSRARKRKEIEALHE-FESTLRESLTKAERQVCTLQEGYAKVQQELEETRQACSLLEQEHAKLRER 259
                 66677777888888888888888885555555555.66666666666666666666666666655555555555555555555433 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.3   0.00044      0.61      47     120 ..     190     264 ..     149     272 .. 0.48

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00044
   PF13851.1  47 eklmaeikkenkrlkepLkkaeee.veeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekve 120
                 ++ + +  +++++  e L++ e+  +e L k+ +q    ++ +++++++l+e+++  + l++e+  l++r+++ e
  MMETSP0890-20130614|3228_1 190 REYARQSRARKRKEIEALHEFESTlRESLTKAERQVCTLQEGYAKVQQELEETRQACSLLEQEHAKLRERITRSE 264
                 443333333333333333333332123333444444444444444444444444444444444444444444444 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       6.5   8.9e+03      72      77 ..     151     156 ..     139     166 .. 0.42
   2 ?   12.9   8.8   5.1e-05     0.069      43     125 ..     179     261 ..     176     266 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.5
   PF11559.3  72 qskier 77 
                 +s+i+ 
  MMETSP0890-20130614|3228_1 151 NSTINE 156
                 222222 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 5.1e-05
   PF11559.3  43 Llqqrdrdleqresleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlkniiq 125
                 +++ r r  + re   +   +++ eie l+   + l ++l + er++++lqe  ++ +++l+++ q+   + +e ++l+  i 
  MMETSP0890-20130614|3228_1 179 MIRDRIRRERNREYARQSRARKRKEIEALHEFESTLRESLTKAERQVCTLQEGYAKVQQELEETRQACSLLEQEHAKLRERIT 261
                 788888999999999***************************************************************98775 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.9   2.6e+03      48      57 ..     180     189 ..     140     213 .. 0.51
   2 ?   12.0   1.1   0.00013      0.18       5      57 ..     213     265 ..     210     272 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.9
   PF06156.8  48 lrerleelee 57 
                 +r+r++++++
  MMETSP0890-20130614|3228_1 180 IRDRIRRERN 189
                 3333333333 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00013
   PF06156.8   5 elfdklseleeqleelleeleelkkelkelleenaelkleneklrerleelee 57 
                  l ++l++ e+q+ +l+e ++++++el+e+ +  + l+ e +klrer++++e 
  MMETSP0890-20130614|3228_1 213 TLRESLTKAERQVCTLQEGYAKVQQELEETRQACSLLEQEHAKLRERITRSEY 265
                 57899******************************************998865 PP

>> PF11180.3  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.1   0.00038      0.51      97     189 ..     146     237 ..     139     240 .. 0.82
   2 ?    2.0   1.3     0.075     1e+02     143     172 ..     233     262 ..     229     272 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00038
   PF11180.3  97 taqLadveirraqleaqkaqlerliaasearaerLqadlelareQeaqvaarqkqarkeaaaLeaqreaaqaqLrklqrqirqLqaqqeeaia 189
                 t+  a+  i+ +q + + a  ++ +   ear + ++  ++++r+ e + ++ ++ +rke++aL++  +  ++ L k++rq+ +Lq+  +++++
  MMETSP0890-20130614|3228_1 146 TNGNANSTINETQENYNDAADDDGLYSDEAREAMIRDRIRRERNREYARQS-RARKRKEIEALHEFESTLRESLTKAERQVCTLQEGYAKVQQ 237
                 555677788888888888888888999999999999999888887776555.56789****************************98877665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.075
   PF11180.3 143 aqvaarqkqarkeaaaLeaqreaaqaqLrk 172
                 a+v+++ +++r+  + Le+++++ ++++ +
  MMETSP0890-20130614|3228_1 233 AKVQQELEETRQACSLLEQEHAKLRERITR 262
                 79999******************9999875 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.5    0.0016       2.2      54     151 ..     172     262 ..     134     265 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0016
   PF10186.4  54 kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklnslesltaekRsqlcr 151
                 + +a +++  ++ ++++++e  r+          +kr++ie+l e  +++r++l++   ++ +++e  ak+q+e+++t++    le++ a+ R+ + r
  MMETSP0890-20130614|3228_1 172 SDEAREAMIRDRIRRERNREYARQSR-------ARKRKEIEALHEFESTLRESLTKAERQVCTLQEGYAKVQQELEETRQACSLLEQEHAKLRERITR 262
                 33333333333333333333333333.......44566666666666666666666677888*****************************9998866 PP

>> PF13747.1  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.0   0.00083       1.1      21      79 ..     177     242 ..     174     248 .. 0.86
   2 ?   -0.4   0.1      0.85   1.2e+03      31      52 ..     250     271 ..     244     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00083
   PF13747.1  21 esaverrleaerkr.......deleaeiqaldadrsrLaqeLdkaearaerleeanrEvsrrLkaa 79 
                 e+ + +r+++er+r       +  ++ei+al++ +s L + L+kae +  +l+e+ + v+++L+++
  MMETSP0890-20130614|3228_1 177 EAMIRDRIRRERNReyarqsrARKRKEIEALHEFESTLRESLTKAERQVCTLQEGYAKVQQELEET 242
                 56667777777777777777788899************************************9876 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.85
   PF13747.1  31 erkrdeleaeiqaldadrsrLa 52 
                 e+++++l+++i++ + d srL+
  MMETSP0890-20130614|3228_1 250 EQEHAKLRERITRSEYDNSRLN 271
                 4455677777777777777775 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  10.9    0.0018       2.4       6      38 ..     183     215 ..     181     238 .. 0.70
   2 ?    1.1   1.9      0.22   3.1e+02      22      49 ..     234     261 ..     229     266 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0018
  PF07716.10   6 rerRrrNreAArrsRekkkakeeeleervkeLe 38 
                 r rR+rNre Ar sR +k+++ e l e    L+
  MMETSP0890-20130614|3228_1 183 RIRRERNREYARQSRARKRKEIEALHEFESTLR 215
                 77999****************999865444444 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.22
  PF07716.10  22 kkkakeeeleervkeLeeeNaqLrqkve 49 
                 k +++ ee+ +    Le+e a+Lr+++ 
  MMETSP0890-20130614|3228_1 234 KVQQELEETRQACSLLEQEHAKLRERIT 261
                 5566667777777777888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1010  (0.0738736); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:01.25
# Mc/sec: 523.36
//
Query:       MMETSP0890-20130614|3225_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.7   0.0    0.00092   18.7   0.0    1.9  2  PF06743.10 FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
       0.13   11.8   1.7       0.64    9.5   0.0    2.1  2  PF07671.6  Protein of unknown function (DUF1601)
       0.16   11.4   0.3        0.2   11.1   0.2    1.2  1  PF04542.9  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.044     2e+02      37      50 ..       2      15 ..       1      21 [. 0.88
   2 !   18.7   0.0     2e-07   0.00092      19      50 ..      21      52 ..      16      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.044
  PF06743.10 37 spelllnlvwSlcl 50
                +p++l n+ w+++ 
  MMETSP0890-20130614|3225_1  2 NPQALANTTWAFAT 15
                7999*******986 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2e-07
  PF06743.10 19 eeffeklasalereLdsispelllnlvwSlcl 50
                  +f+++a a  ++Lds++p++l n+ w+++ 
  MMETSP0890-20130614|3225_1 21 PDLFDAIAAAALTKLDSFKPQNLANTAWAFAT 52
                5699**************************96 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.05   2.3e+02      29      36 ..       2       9 ..       2       9 .. 0.95
   2 ?    9.5   0.0   0.00014      0.64      17      36 ..      23      46 ..      20      46 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.05
   PF07671.6 29 NpQsIANt 36
                NpQ  ANt
  MMETSP0890-20130614|3225_1  2 NPQALANT 9 
                9******8 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00014
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         F+pQ+ ANt
  MMETSP0890-20130614|3225_1 23 LFDAIAaaalTKLDSFKPQNLANT 46
                788888888888899********9 PP

>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.4e-05       0.2      16      57 ..      13      53 ..       4      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.4e-05
                HS-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH CS
   PF04542.9 16 llgsgadaeDlvQeaflrllraverfdpergvkfsawlltii 57
                +   +++a Dl+  + +++l ++++f p    + +aw++ ++
  MMETSP0890-20130614|3225_1 13 FATASVEAPDLFDAIAAAALTKLDSFKPQNL-ANTAWAFATA 53
                566789*********************7777.99***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.32s 00:00:00.62 Elapsed: 00:00:00.57
# Mc/sec: 235.50
//
Query:       MMETSP0890-20130614|3241_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-16   59.8   0.0    4.6e-16   59.3   0.0    1.2  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   3.3e-20   4.6e-16       1     210 [.      35     256 ..      35     258 .. 0.87

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 3.3e-20
                 HHH---EEE-----HHHHHHHHHH---T..HHHHHT-------EE----B-----BSGGTEEEE---HHHHHHHHHHHH----SEEE...EEEEE...E---S-----E.EEE-GGGTS-EE----EE-EEEESS-B-S----EEEE---------.............................................-EEE----..............----........ CS
   PF05721.8   1 feedGylviegflsaeevealraeieal..ldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyvaavlqsmyqd.ifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae......................ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                 fe  G++ +++ l+ +++eal+ ++e+   +   l +++++ +   +++++d+  +  ++  + + +l    + +l+ ++++++ +     + +y +  +k+p++ +++ pwH D  +++ +   ++++vw+al+ +   n +  ++P SH  +    r+ ++++++ +                       +d   ++ e +   +++ +Gd+++f+++ +Hg++ N +++ Rr
  MMETSP0890-20130614|3241_1  35 FEAMGAIMLPQILDSDWIEALQIAAENNmlNPGPLCDEHASAAGTSGRFHDDQFLWK-RHQAMEQYVLYS-GIGALAARAMRSTSC-----HIFYDQlLVKEPGTVAPT-PWHNDTSYWQLQ-GSQICSVWLALDIV-SANVGVAYVPASHHTKI---RHAITNFSGADHsdkntyfsgeaaqnsefdqlpdIDALVEKGEISLLKWDMLPGDVIVFNSYAIHGAKGNPNKANRR 256
                 677899**************9988888555888999999999999999999977777.999999999999.*************95.....56665589****888888.**********88.69*********999.78889*********943...45666666555566788****************99999999999**************************9999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 855.06
//
Query:       MMETSP0890-20130614|3247_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-59  201.0   0.0    2.8e-59  200.2   0.0    1.3  1  PF00069.20 Protein kinase domain
    7.5e-40  136.5   0.0    1.1e-39  135.9   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
      0.008   15.3   0.0      0.016   14.3   0.0    1.4  1  PF08148.7  DSHCT (NUC185) domain
  ------ inclusion threshold ------
      0.036   13.6   0.3       0.78    9.3   0.0    2.7  3  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.0   8.2e-63   2.8e-59       2     257 ..       6     258 ..       5     259 .. 0.94

  Alignments for each domain:
  == domain 1    score: 200.2 bits;  conditional E-value: 8.2e-63
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..HHCCB..-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTS CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..kegkl..seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkh 257
                 + l+ +G+G+ G+V  +++++ + + + K++++   +s+++++a rE+ +l++l H+nivk+++++ + ++l+l++e+++ggdl+++++  k+++l   +  i +++ q++ +l+y+H +++iHrDLK++N++l++++++k+ D+G+ak le++  +++++vgt++Y++PE+++ ++ y+ ++D+W+lG+++yell  k pf+ +   + l +++ +  ++++ +  ++++  +e+k+++ +ll+k++++R++a++i+++
  MMETSP0890-20130614|3247_1   6 TELNLIGRGAQGSVHLVRDEDGN-IRVSKTVDTVALDSREREAAHRECGLLRELCHENIVKYIDSYAQGRSLILIMEWCQGGDLSRHINytKSQNLqyHDGVIIRWIAQMCDALQYIHAKRVIHRDLKSSNVFLSSEQDVKLGDLGIAKILESTLADADSVVGTPQYLSPELCE-NRPYSYSSDLWALGCVIYELLALKRPFEAS---NLLGVVYCVVMTDIDISPLQQRP--NEIKSIVLSLLNKQADQRPSAMQIYQQ 258
                 56789**********99999988.7999*************************************************************99555553377889**********************************************99***********************.****************************99...88888888888888888777766..9***********************986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   3.3e-43   1.1e-39       6     257 ..      10     257 ..       6     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 135.9 bits;  conditional E-value: 3.3e-43
                 EE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHH..HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12   6 klGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkd..llkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                  +G+Ga G+V+  + +    + +++V  Kt+ +   +++e+e+  +e  ++++l h+nivk++  + ++++l++++e+++gGdL++ ++ +++++l+++d  ++++++q++++++y+++k+++HrdL + Nv+l++e+ vk++D G+a+ +  +++  + ++     ++++pE+ +++ ++  sD W+ G++++E++ l  +p++  +   v+  +  ++  ++  ++ p+e+++++ + +++++++Rp+  ++ +
  MMETSP0890-20130614|3247_1  10 LIGRGAQGSVHLVRDE----DGNIRVS-KTVdTVALDSREREAAHRECGLLRELCHENIVKYIDSYAQGRSLILIMEWCQGGDLSRHINYTKSQNLQYHDgvIIRWIAQMCDALQYIHAKRVIHRDLKSSNVFLSSEQDVKLGDLGIAKIL--ESTLADADSVVGTPQYLSPELCENRPYSYSSDLWALGCVIYELLALK-RPFEASNLLGVVYCVvMTDIDISPLQQRPNEIKSIVLSLLNKQADQRPSAMQIYQ 257
                 6999999999987766....4445543.55523367778899*************************************************9******99777899*******************************************99..8888999999999********************************76.999999777666665599999****************************999976 PP

>> PF08148.7  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.7e-06     0.016     107     148 ..      78     124 ..      28     136 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.7e-06
   PF08148.7 107 vvyeWarGksfaeil.....eetdldeGdiVRlirRlddllrqiana 148
                 ++ eW++G+++++ +     ++ +   G i+R+i ++ d l+ i   
  MMETSP0890-20130614|3247_1  78 LIMEWCQGGDLSRHInytksQNLQYHDGVIIRWIAQMCDALQYIHAK 124
                 67899999999999988887778899***************887654 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.098   3.4e+02      26      84 ..      37      90 ..      11     104 .. 0.73
   2 ?    9.3   0.0   0.00023      0.78     135     185 ..      93     143 ..      79     150 .. 0.72
   3 ?   -0.0   0.0      0.16   5.4e+02      75     151 ..     698     768 ..     671     789 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.098
                EEESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
  PF01636.18 26 rrarparaaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler 84
                ++a+++r +e ++re  llr L   +i v + ++   +  + + l  ++e+++g +l+r
  MMETSP0890-20130614|3247_1 37 TVALDSREREAAHRECGLLRELCHENI-V-KYID---SYAQGRSLILIMEWCQGGDLSR 90
                567777888888999999999998888.5.8888...4445555999**********99 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00023
                 HHHHHCTHH.HHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTT CS
  PF01636.18 135 alvaselle.lleeleervlaalaallpgaeppvllHgDlhpgNllvdpddg 185
                 ++ +s+ l+   + + + ++++++al+    +++++H+Dl++ N+++ ++++
  MMETSP0890-20130614|3247_1  93 NYTKSQNLQyHDGVIIRWIAQMCDALQYI-HAKRVIHRDLKSSNVFLSSEQD 143
                 55555666654455555467777777775.99***************96655 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.16
                 E---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS-.-TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHH CS
  PF01636.18  75 eyvpgevlerklnarqlpallealaellaalhqad.paadpladflapyltllrllesataalvasellelleeleer 151
                 ey+ g+ ++        pa+ +++++ +a     + p+adp++++  +++++ ++  s+ aa++  e     + + ++
  MMETSP0890-20130614|3247_1 698 EYIRGRLTSV------NPAVRGEWHRRRATYEGSPpPPADPPPRQFIDRPNQPIRQSSENAAQLSGERES-VQHFSKQ 768
                 6677777777......778888899999999999887788777666665555555555533333333333.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       752  (0.0550029); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:01.28
# Mc/sec: 1557.63
//
Query:       MMETSP0890-20130614|3262_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 323.15
//
Query:       MMETSP0890-20130614|3265_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 249.22
//
Query:       MMETSP0890-20130614|3261_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0055   16.2   1.1     0.0098   15.4   0.1    1.8  2  PF04999.8  Cell division protein FtsL
  ------ inclusion threshold ------
      0.049   13.4   0.3       0.12   12.1   0.2    1.8  1  PF13180.1  PDZ domain
      0.079   13.0   0.4       0.16   12.0   0.2    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF04999.8  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.1e-06    0.0098      12      67 ..       6      61 ..       1      65 [. 0.90
   2 ?   -1.3   0.0      0.37   1.7e+03      63      82 ..     178     197 ..     148     201 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-06
   PF04999.8 12 vgkllllllllvlvsAvgvvyvthqtRqlvselekllqerdkLeeewgrLlLEqst 67
                 + ++ll ++++l+sA  + +v +q     +el kl++++ +L+e  ++L+LE   
  MMETSP0890-20130614|3261_1  6 INLFVLLQVIILLWSARCTAFVFFQQVGKSAELRKLKSQKLDLDEIAQNLKLEVYD 61
                4567888999*******************************************765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.37
   PF04999.8  63 LEqstlaahsRveriAreqL 82 
                 +  ++ ++ ++++++A e+L
  MMETSP0890-20130614|3261_1 178 VQYQSGTDSQQIKALAGENL 197
                 44455556666666666665 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   2.7e-05      0.12      15      81 ..     107     179 ..      77     180 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
   PF13180.1  15 gvlvvsVkessPaakag.lkpGDiilkvdgkkvksl.......tdlkslllkkkpGdtvkltvlRdgkkktvevk 81 
                  vl+ +V  s+ aak g l +GD+i+ +     + +        ++++    ++ +d+++++v R  k+ +++v+
  MMETSP0890-20130614|3261_1 107 LVLISDV--SGNAAKDGrLCAGDTIVGIRSASGSRRltaldydLTVEGIAEVAQDNDEITIEVNRLVKRAEISVQ 179
                 3444444..455666666**********9887744433334435555666699************9999999986 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   3.5e-05      0.16      17      52 ..      99     132 ..      80     168 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.5e-05
                 EESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEE CS
  PF00595.19  17 kggsdkrdkgifvsevvpggaaeagglkeGDkIlsv 52 
                 ++g+d   +g++  + v g aa+ g l++GD I+++
  MMETSP0890-20130614|3261_1  99 ARGQDG--QGLVLISDVSGNAAKDGRLCAGDTIVGI 132
                 445555..466666666666666666********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.67
# Mc/sec: 833.36
//
Query:       MMETSP0890-20130614|3268_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-107  356.6   0.0   3.5e-107  356.4   0.0    1.0  1  PF01269.12 Fibrillarin
     0.0002   20.4   0.0    0.00029   19.9   0.0    1.2  1  PF08704.5  tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PF01269.12  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.4   0.0  5.1e-111  3.5e-107       1     228 [.      62     295 ..      62     296 .. 0.98

  Alignments for each domain:
  == domain 1    score: 356.4 bits;  conditional E-value: 5.1e-111
                 EEEE.SSTTEEEEE----EEEEE-SSTT------EEEE----...........EEEEE-TTT-S---TTT------S------EEEE------HHHHHHHHH-----EE--BS-HHHHHHHHHHHCT-TTB---BS-TTSGGGCTTC---BSEEEEE--STTHHHHHHHHHHHHB-----EEEEEEHHHH-SSS-HHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE- CS
  PF01269.12   1 vekheklegvyvvkekedalatknlvpgksvygEklikveee.......eekvEyRvWnpfrsKlaaailkglkeipikkgskvLYLGaasGttvsHvsDivgeegvvyavefsprvgrelievakkRknivPileDArkPekYrmlvekvDvifaDvaqpdqarilalnaklflkeggyvvisikarsidstaepeevfkeeveklkeeklkvleqvtlepyekdhalvvgkyk 228
                 +e+h +++gv+++++kedal+t n +pgk+vygEk+i+v++          k+EyRvWnpfrsKlaaail+g+++i++ +gskvLYLG a+GttvsHvsDivg++g+vyavef++r gr+li++ak R+n++Pi+eDAr+P kYrml+++vD+ifaDvaqpdqari+a na++flk+gg +visika++idsta+pe+vf++ev kl+++++ ++eq+tlepye+dha+vvg y+
  MMETSP0890-20130614|3268_1  62 IEPH-THTGVFIARSKEDALVTLNSTPGKDVYGEKRISVDGPpledgtsGPKIEYRVWNPFRSKLAAAILGGVDNIHMGPGSKVLYLGGAAGTTVSHVSDIVGPQGCVYAVEFAHRPGRDLINMAKFRNNVIPIIEDARHPLKYRMLIGMVDCIFADVAQPDQARIVAINAQHFLKAGGGFVISIKASCIDSTATPEAVFAREVAKLQKDDFAPKEQLTLEPYERDHAVVVGLYR 295
                 5788.99*********************************988888887889************************************************************************************************************************************************************************************986 PP

>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.3e-08   0.00029      97     213 ..     135     252 ..     127     286 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.3e-08
   PF08704.5  97 kLevkpGsvvvesGtGsgslshaiartvaPtGhlytfefheq..RaekareeFrehelsslvtvthrdvc.keGFdeevenkaDavFLDlPaPweaiphaaka...lkkeggrlcsF.sPCieq 213
                 ++++ pGs+v+  G  +g   + ++  v+P+G +y++ef ++  R    +  Fr++ +         d+     + + + + +D +F D+ +P++a   a++a   lk+ gg ++s  + Ci+ 
  MMETSP0890-20130614|3268_1 135 NIHMGPGSKVLYLGGAAGTTVSHVSDIVGPQGCVYAVEFAHRpgRDLINMAKFRNNVIP-----IIEDARhPLKY-RMLIGMVDCIFADVAQPDQARIVAINAqhfLKAGGGFVISIkASCIDS 252
                 567889********999999999****************76522444455566665554.....33343312334.446699*************95444432111588888888873468764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 871.93
//
Query:       MMETSP0890-20130614|3274_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0032   17.1   0.0     0.0058   16.3   0.0    1.5  1  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.3e-07    0.0058       3      28 ..      49      74 .]      47      74 .] 0.93

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.3e-07
                EEEEEESSSSSEEEEEEESSSTEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllas 28
                 ++t+++H++ V cva+s d++++a+
  MMETSP0890-20130614|3274_1 49 TLRTIEAHNNRVVCVAYSFDSSMIAT 74
                6899********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.92
# Mc/sec: 192.75
//
Query:       MMETSP0890-20130614|3269_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-33  112.3  13.2    2.3e-15   55.8   0.2    3.1  3  PF13414.1  TPR repeat
    4.2e-22   76.3  13.6    2.5e-09   36.4   0.2    3.5  3  PF13431.1  Tetratricopeptide repeat
    1.7e-17   63.0   6.2    5.1e-12   45.4   1.3    2.5  3  PF13424.1  Tetratricopeptide repeat
    3.2e-17   61.2  13.1    1.2e-06   27.7   1.3    4.8  3  PF00515.23 Tetratricopeptide repeat
    3.3e-11   42.0   4.0    0.00037   19.9   0.2    3.3  3  PF13181.1  Tetratricopeptide repeat
      7e-11   41.0   4.6    0.00087   18.9   0.2    3.7  3  PF07719.12 Tetratricopeptide repeat
    8.5e-11   42.1   1.8    2.5e-06   27.8   0.1    2.4  2  PF13432.1  Tetratricopeptide repeat
    9.2e-11   41.2   0.1     0.0022   18.3   0.0    3.4  3  PF13428.1  Tetratricopeptide repeat
    1.6e-09   36.7   0.2     0.0052   16.3   0.0    3.2  3  PF13176.1  Tetratricopeptide repeat
    5.6e-08   32.3   1.4    0.00065   19.4   0.1    3.5  3  PF13374.1  Tetratricopeptide repeat
    1.3e-05   24.4   2.1      0.023   13.8   0.1    2.3  2  PF10373.4  Est1 DNA/RNA binding domain
    0.00013   22.3   2.5        0.4   11.2   0.1    2.7  2  PF08238.7  Sel1 repeat
    0.00021   21.4   1.0       0.73   10.3   0.1    3.0  3  PF13174.1  Tetratricopeptide repeat
    0.00059   19.3   0.6        0.1   12.0   0.1    2.2  2  PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
      0.002   17.1   1.1     0.0043   15.9   0.7    1.6  1  PF02259.18 FAT domain
     0.0033   17.4   1.0       0.41   10.7   0.0    2.3  2  PF10704.4  Protein of unknown function (DUF2508)
     0.0057   16.7   0.0         27    5.2   0.0    3.3  3  PF01394.15 Clathrin propeller repeat
  ------ inclusion threshold ------
      0.012   15.3   0.8      0.017   14.8   0.6    1.4  1  PF08349.6  Protein of unknown function (DUF1722)
      0.017   13.4   0.1       0.38    9.0   0.0    2.0  2  PF07340.6  Cytomegalovirus IE1 protein
       0.04   13.6   0.2        4.8    6.9   0.0    2.2  2  PF00619.16 Caspase recruitment domain
      0.043   13.4   0.1        1.9    8.1   0.0    2.2  2  PF05209.8  Septum formation inhibitor MinC, N-terminal domain
      0.048   13.0   2.1        1.4    8.2   0.1    1.9  2  PF00038.16 Intermediate filament protein
        0.1   12.3   0.6        9.3    6.0   0.1    2.2  2  PF12053.3  Domain of unknown function (DUF3534)
       0.16   11.6   1.3        3.2    7.4   0.1    2.4  3  PF02185.11 Hr1 repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.2   2.1e-14   1.2e-11      24      69 .]       2      47 ..       1      47 [. 0.98
   2 !   55.8   0.2   4.1e-18   2.3e-15      16      69 .]      29      82 ..      27      82 .. 0.98
   3 !   32.0   1.3   1.1e-10   6.1e-08       2      44 ..      49      92 ..      48      97 .. 0.94

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2.1e-14
   PF13414.1 24 eayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                ++y+kA+e dp+na++y+nl++++++  k+ ++A ++y+kA+e dP
  MMETSP0890-20130614|3269_1  2 QMYRKAIEVDPKNANAYNNLGHLLQNVRKKHDQAEQMYRKAIEVDP 47
                69*******************************************9 PP

  == domain 2    score: 55.8 bits;  conditional E-value: 4.1e-18
   PF13414.1 16 egdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                ++++d+A+++y+kA+e dp++a++y+nl++++++  k+y++A ++++kA+e dP
  MMETSP0890-20130614|3269_1 29 RKKHDQAEQMYRKAIEVDPKYAIAYNNLGHLLQHVRKKYDQAEQMFRKAIEVDP 82
                69***************************************************9 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 1.1e-10
   PF13414.1  2 nAealkelGnalfk.egdydeAieayekAleldpnnaelyynlA 44
                 A a+++lG  l + +++yd+A+++++kA+e dpn+ ++ +nl+
  MMETSP0890-20130614|3269_1 49 YAIAYNNLGHLLQHvRKKYDQAEQMFRKAIEVDPNYNIARNNLS 92
                599**********9899*************************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.2   4.4e-12   2.5e-09       1      34 []       3      37 ..       3      37 .. 0.92
   2 !   33.5   0.1   3.7e-11   2.1e-08       1      34 []      38      72 ..      38      72 .. 0.92
   3 !   15.4   0.2   2.5e-05     0.014       1      22 [.      73      94 ..      73      99 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 4.4e-12
   PF13431.1  1 lyekaleldPnnadaynnLAellln.nGdleeAeq 34
                +y+ka+e dP+na+aynnL+ ll+n ++++++Aeq
  MMETSP0890-20130614|3269_1  3 MYRKAIEVDPKNANAYNNLGHLLQNvRKKHDQAEQ 37
                7***********************84578999997 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 3.7e-11
   PF13431.1  1 lyekaleldPnnadaynnLAellln.nGdleeAeq 34
                +y+ka+e dP++a aynnL+ ll+  ++++++Aeq
  MMETSP0890-20130614|3269_1 38 MYRKAIEVDPKYAIAYNNLGHLLQHvRKKYDQAEQ 72
                7********************99853799****98 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 2.5e-05
   PF13431.1  1 lyekaleldPnnadaynnLAel 22
                +++ka+e dPn+  a+nnL ++
  MMETSP0890-20130614|3269_1 73 MFRKAIEVDPNYNIARNNLSNY 94
                79*****************986 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   8.9e-09   5.1e-06      33      77 ..       2      47 ..       1      48 [. 0.89
   2 !   45.4   1.3     9e-15   5.1e-12       4      76 ..      14      81 ..      11      83 .. 0.93
   3 ?   -2.4   0.1       7.1   4.1e+03      45      54 ..     102     111 ..      84     113 .. 0.55

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 8.9e-09
   PF13424.1 33 ellrelgddhpdtaralnnlanlyla.lgdydeAleylekAleiae 77
                +++r++ + +p  a+a+nnl+ l++  ++++d+A+++++kA+e+++
  MMETSP0890-20130614|3269_1  2 QMYRKAIEVDPKNANAYNNLGHLLQNvRKKHDQAEQMYRKAIEVDP 47
                6788888889999*************8889************9875 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 9e-15
   PF13424.1  4 latilnnlalvlr.rlgdydeAlelyekalellrelgddhpdtaralnnlanlyla.lgdydeAleylekAleia 76
                 a+++nnl+++l+   +++d+A+++y+ka+e+       +p +a a+nnl+ l+++ +++yd+A+++++kA+e++
  MMETSP0890-20130614|3269_1 14 NANAYNNLGHLLQnVRKKHDQAEQMYRKAIEV-------DPKYAIAYNNLGHLLQHvRKKYDQAEQMFRKAIEVD 81
                699***************************88.......69***************8889************976 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 7.1
   PF13424.1  45 taralnnlan 54 
                 +a++l  lan
  MMETSP0890-20130614|3269_1 102 WATLLALLAN 111
                 3455555554 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0012       0.7      23      34 .]       3      14 ..       1      14 [. 0.90
   2 !   25.3   1.7   1.2e-08   6.6e-06       1      34 []      15      49 ..      15      49 .. 0.92
   3 !   27.7   1.3   2.1e-09   1.2e-06       1      34 []      50      84 ..      50      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0012
                HHHHHHHHHTTH CS
  PF00515.23 23 yyekALelnPnn 34
                 y+kA+e++P+n
  MMETSP0890-20130614|3269_1  3 MYRKAIEVDPKN 14
                7*********98 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 1.2e-08
                HHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnaylk.lgkydeAleyyekALelnPnn 34
                a+a++nlG+++++  +k+d+A++ y+kA+e++P++
  MMETSP0890-20130614|3269_1 15 ANAYNNLGHLLQNvRKKHDQAEQMYRKAIEVDPKY 49
                78*******99874799****************97 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 2.1e-09
                HHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnaylk.lgkydeAleyyekALelnPnn 34
                a a++nlG+++++  +kyd+A++ ++kA+e++Pn+
  MMETSP0890-20130614|3269_1 50 AIAYNNLGHLLQHvRKKYDQAEQMFRKAIEVDPNY 84
                679*****98875389*****************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.26   1.5e+02      24      33 ..       4      13 ..       1      14 [. 0.82
   2 !   19.9   0.2   6.5e-07   0.00037       1      33 [.      15      48 ..      15      49 .. 0.94
   3 !   19.4   0.1   9.5e-07   0.00054       3      34 .]      52      84 ..      50      84 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.26
                HH---HHHH. CS
   PF13181.1 24 lekalelkpr 33
                ++ka+e +p+
  MMETSP0890-20130614|3269_1  4 YRKAIEVDPK 13
                9*******94 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 6.5e-07
                ---TTT---HHHH.TT-HHHHHHHHH---HHHH. CS
   PF13181.1  1 akayynlGdiYrq.lGdydkAkeylekalelkpr 33
                a+ay+nlG+++ +  +++d+A++ ++ka+e +p+
  MMETSP0890-20130614|3269_1 15 ANAYNNLGHLLQNvRKKHDQAEQMYRKAIEVDPK 48
                689**********99999**************96 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 9.5e-07
                -TTT---HHHH.TT-HHHHHHHHH---HHHH.H CS
   PF13181.1  3 ayynlGdiYrq.lGdydkAkeylekalelkprn 34
                ay+nlG+++    ++yd+A++ ++ka+e +p++
  MMETSP0890-20130614|3269_1 52 AYNNLGHLLQHvRKKYDQAEQMFRKAIEVDPNY 84
                79*********9*******************86 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.062        35      24      34 .]       4      14 ..       2      14 .. 0.91
   2 !   17.4   0.2   4.4e-06    0.0025       1      34 []      15      49 ..      15      49 .. 0.95
   3 !   18.9   0.2   1.5e-06   0.00087       1      34 []      50      84 ..      50      84 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.062
                HHHHHHH-TTS CS
  PF07719.12 24 fekAleldPnn 34
                ++kA+e dP+n
  MMETSP0890-20130614|3269_1  4 YRKAIEVDPKN 14
                9********97 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.4e-06
                HHHHHHHHHHHHHTT-H.HHHHHHHHHHHHH-TTS CS
  PF07719.12  1 aealynlGlayyklgdy.eeAleafekAleldPnn 34
                a a++nlG ++ + ++  ++A++ ++kA+e dP++
  MMETSP0890-20130614|3269_1 15 ANAYNNLGHLLQNVRKKhDQAEQMYRKAIEVDPKY 49
                689******************************85 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHHHHTT-H.HHHHHHHHHHHHH-TTS CS
  PF07719.12  1 aealynlGlayyklgdy.eeAleafekAleldPnn 34
                a a++nlG ++ + ++  ++A++ f+kA+e dPn+
  MMETSP0890-20130614|3269_1 50 AIAYNNLGHLLQHVRKKyDQAEQMFRKAIEVDPNY 84
                678999999999877777***************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.1e-06   0.00064      19      65 .]       3      50 ..       1      50 [. 0.94
   2 !   27.8   0.1   4.4e-09   2.5e-06      11      64 ..      30      84 ..      21      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.1e-06
   PF13432.1 19 aleaalalaPeaaeallllaeall.rlgrldeAaallraalalaPddp 65
                 +++a++ +P++a+a+ +l+ +l   ++++d+A++ +r+a++ +P+++
  MMETSP0890-20130614|3269_1  3 MYRKAIEVDPKNANAYNNLGHLLQnVRKKHDQAEQMYRKAIEVDPKYA 50
                5899********************999***************999875 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 4.4e-09
   PF13432.1 11 GdydeAlaaleaalalaPeaaeallllaeall.rlgrldeAaallraalalaPdd 64
                ++ d+A++ +++a++ +P++a a+ +l+ +l   ++++d+A++ +r+a++ +P++
  MMETSP0890-20130614|3269_1 30 KKHDQAEQMYRKAIEVDPKYAIAYNNLGHLLQhVRKKYDQAEQMFRKAIEVDPNY 84
                569*****************************777***************99985 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0047       2.7      22      43 ..       2      23 ..       1      24 [. 0.91
   2 !   18.3   0.0   3.8e-06    0.0022       3      43 ..      17      58 ..      16      59 .. 0.84
   3 !   14.9   0.0   4.7e-05     0.027       3      38 ..      52      88 ..      50      92 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0047
   PF13428.1 22 allrralalaPddaealllLar 43
                +++r+a++ +P++a a+ +L+ 
  MMETSP0890-20130614|3269_1  2 QMYRKAIEVDPKNANAYNNLGH 23
                79**************999985 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.8e-06
   PF13428.1  3 allalaralla.lGdpdeAiallrralalaPddaealllLar 43
                a+  l+++l + +  +d+A++++r+a++ +P+ a a+ +L+ 
  MMETSP0890-20130614|3269_1 17 AYNNLGHLLQNvRKKHDQAEQMYRKAIEVDPKYAIAYNNLGH 58
                677788887663678*******************99998875 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 4.7e-05
   PF13428.1  3 allalaralla.lGdpdeAiallrralalaPddaeal 38
                a+  l+++l + +  +d+A++++r+a++ +P+   a+
  MMETSP0890-20130614|3269_1 52 AYNNLGHLLQHvRKKYDQAEQMFRKAIEVDPNYNIAR 88
                566778777663678****************975555 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.91   5.2e+02      21      33 ..       3      13 ..       1      16 [. 0.63
   2 !   16.3   0.0   9.1e-06    0.0052       1      32 [.      17      47 ..      17      48 .. 0.93
   3 !   15.8   0.0   1.4e-05    0.0077       1      33 [.      52      83 ..      52      87 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.91
   PF13176.1 21 lyeraLaltkdpl 33
                +y++  a++ dp 
  MMETSP0890-20130614|3269_1  3 MYRK--AIEVDPK 13
                5777..6666665 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 9.1e-06
   PF13176.1  1 allnLarlysr.lgdyekAielyeraLaltkdp 32
                a++nL++l ++ + ++++A+++y++  a++ dp
  MMETSP0890-20130614|3269_1 17 AYNNLGHLLQNvRKKHDQAEQMYRK--AIEVDP 47
                89***********************..888877 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 1.4e-05
   PF13176.1  1 allnLarlysr.lgdyekAielyeraLaltkdpl 33
                a++nL++l +  + +y++A++++++  a++ dp+
  MMETSP0890-20130614|3269_1 52 AYNNLGHLLQHvRKKYDQAEQMFRK--AIEVDPN 83
                89***********************..8888875 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.1e-06   0.00065       2      30 ..      15      44 ..      15      45 .. 0.94
   2 !   18.4   0.0   2.3e-06    0.0013       2      30 ..      50      79 ..      49      80 .. 0.92
   3 ?   -0.0   0.2       1.5   8.3e+02       4      12 ..      87      95 ..      86     101 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.1e-06
   PF13374.1  2 aaalnnLAlalrar.gryeeAlaleeeala 30
                a a+nnL+ +l++  +++++A++++++a +
  MMETSP0890-20130614|3269_1 15 ANAYNNLGHLLQNVrKKHDQAEQMYRKAIE 44
                789***********************9976 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.3e-06
   PF13374.1  2 aaalnnLAlalrar.gryeeAlaleeeala 30
                a a+nnL+ +l+   ++y++A++++++a +
  MMETSP0890-20130614|3269_1 50 AIAYNNLGHLLQHVrKKYDQAEQMFRKAIE 79
                679***********************9976 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 1.5
   PF13374.1  4 alnnLAlal 12
                a+nnL ++ 
  MMETSP0890-20130614|3269_1 87 ARNNLSNYS 95
                78****985 PP

>> PF10373.4  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00049      0.28       5      32 ..       4      31 ..       1      34 [. 0.88
   2 !   13.8   0.1     4e-05     0.023       1      57 [.      35      92 ..      35      94 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00049
   PF10373.4  5 YllAasllPssGnpyNQlaviatyagde 32
                Y++A+++ P++ n+yN l+ +   ++++
  MMETSP0890-20130614|3269_1  4 YRKAIEVDPKNANAYNNLGHLLQNVRKK 31
                ********************99887765 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4e-05
   PF10373.4  1 AlrYYllAasllPssGnpyNQlaviatyagdeldavYyylR.SlavrnpfptAreNLk 57
                A++ Y++A+++ P++  +yN l+ +  ++++++d     +R ++ v+  +  Ar+NL 
  MMETSP0890-20130614|3269_1 35 AEQMYRKAIEVDPKYAIAYNNLGHLLQHVRKKYDQAEQMFRkAIEVDPNYNIARNNLS 92
                7889*****************************9995555516666666699999995 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1    0.0007       0.4       1      35 [.      15      43 ..      15      44 .. 0.85
   2 !   10.5   0.0    0.0012      0.67       1      35 [.      50      78 ..      50      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0007
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAA 35
                a A++nLG  +  l     v k +++A++ y+kA 
  MMETSP0890-20130614|3269_1 15 ANAYNNLG--H--LLQN--VRKKHDQAEQMYRKAI 43
                6799****..9..7775..888899*********6 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0012
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAA 35
                a A++nLG  +  l     v k +++A++ ++kA 
  MMETSP0890-20130614|3269_1 50 AIAYNNLG--H--LLQH--VRKKYDQAEQMFRKAI 78
                5699****..8..6664..8888***********6 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       6.7   3.8e+03      21      32 ..       2      13 ..       1      14 [. 0.68
   2 !    9.0   0.0    0.0033       1.9       6      32 ..      21      48 ..      16      49 .. 0.84
   3 !   10.3   0.1    0.0013      0.73      13      32 ..      57      83 ..      48      84 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 6.7
                HHHHHHHHH-TT CS
   PF13174.1 21 ealerlikeyPd 32
                +++++ i+  P+
  MMETSP0890-20130614|3269_1  2 QMYRKAIEVDPK 13
                567777776665 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0033
                HHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
   PF13174.1  6 lalsyyk.lgdtdeAlealerlikeyPd 32
                l+ ++++  +++d+A +++++ i+  P+
  MMETSP0890-20130614|3269_1 21 LGHLLQNvRKKHDQAEQMYRKAIEVDPK 48
                6777777779*************98886 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.0013
                H.......HHHHHHHHHHHHHHHH-TT CS
   PF13174.1 13 l.......gdtdeAlealerlikeyPd 32
                +       +++d+A +++++ i+  P+
  MMETSP0890-20130614|3269_1 57 GhllqhvrKKYDQAEQMFRKAIEVDPN 83
                133444448*************99987 PP

>> PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0061       3.5      64     115 ..      10      51 ..       2      61 .. 0.73
   2 !   12.0   0.1   0.00018       0.1      81     122 ..      52      93 ..      48     117 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0061
                 H-TT-HHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH CS
   PF06552.7  64 idPkkhdalWcignaytsfafltpdeeeakenfdkatqffqqavdedPdndl 115
                 +dPk        +nay   + l    ++ +++ d+a q++++a++ dP+  +
  MMETSP0890-20130614|3269_1  10 VDPKN-------ANAYNNLGHL---LQNVRKKHDQAEQMYRKAIEVDPKYAI 51 
                 55555.......5666655555...567899999***********9998665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00018
                 HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH CS
   PF06552.7  81 sfafltpdeeeakenfdkatqffqqavdedPdndlyrkslel 122
                 ++  l +  ++ ++++d+a q+f++a++ dP+ ++ r+ l  
  MMETSP0890-20130614|3269_1  52 AYNNLGHLLQHVRKKYDQAEQMFRKAIEVDPNYNIARNNLSN 93 
                 6667777778999********************999998865 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7   7.6e-06    0.0043     248     314 ..      11      72 ..       4     101 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.6e-06
  PF02259.18 248 tkllarcflklGewleklksnweqekkdeilkaystatefdpqwykawhswalanfevvqaeesekk 314
                 ++ +a +++ lG  l++      ++k d+++++y++a+e+dp+ + a++++++  ++v +++ ++++
  MMETSP0890-20130614|3269_1  11 DPKNANAYNNLGHLLQNV-----RKKHDQAEQMYRKAIEVDPKYAIAYNNLGHLLQHVRKKYDQAEQ 72 
                 567899************.....9******************9999************999997776 PP

>> PF10704.4  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.026        15      16      45 ..      20      49 ..       5      56 .. 0.87
   2 !   10.7   0.0   0.00072      0.41      17      48 ..      56      87 ..      52      94 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.026
   PF10704.4 16 eLleliektkeeweeakkleensvdlseel 45
                +L +l+++++++ ++a ++ +++++++++ 
  MMETSP0890-20130614|3269_1 20 NLGHLLQNVRKKHDQAEQMYRKAIEVDPKY 49
                577899*******************99765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00072
   PF10704.4 17 Lleliektkeeweeakkleensvdlseeliyq 48
                L +l++++++++++a ++++++++++++ + +
  MMETSP0890-20130614|3269_1 56 LGHLLQHVRKKYDQAEQMFRKAIEVDPNYNIA 87
                66899*******************99876554 PP

>> PF01394.15  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.37   2.1e+02       9      28 ..       4      21 ..       4      30 .. 0.83
   2 ?    4.9   0.0      0.06        34       9      29 ..      39      57 ..      39      61 .. 0.86
   3 ?    5.2   0.0     0.048        27       9      25 ..      74      90 ..      74      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.37
  PF01394.15  9 fptatmeswlfiiaingttk 28
                +++a+++ ++  +a+n  + 
  MMETSP0890-20130614|3269_1  4 YRKAIEVDPKNANAYN--NL 21
                899************9..44 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.06
  PF01394.15  9 fptatmeswlfiiaingttkg 29
                +++a+++ +++ ia+n  + g
  MMETSP0890-20130614|3269_1 39 YRKAIEVDPKYAIAYN--NLG 57
                899*************..544 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.048
  PF01394.15  9 fptatmeswlfiiaing 25
                f++a+++ ++++ia+n+
  MMETSP0890-20130614|3269_1 74 FRKAIEVDPNYNIARNN 90
                89*************94 PP

>> PF08349.6  Protein of unknown function (DUF1722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.6   3.1e-05     0.017       7      71 ..      13      72 ..      10     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.1e-05
   PF08349.6  7 hsqkeyrelGrlvaeakkkeleelleeYeeelmealkkkatrkshtnvlqHilGYfkkklskeek 71
                ++ ++y++lG+l+++ +kk      ++ e++  +a++  +++   +n l H+l +++kk +++e+
  MMETSP0890-20130614|3269_1 13 KNANAYNNLGHLLQNVRKK-----HDQAEQMYRKAIEVDPKYAIAYNNLGHLLQHVRKKYDQAEQ 72
                57899*********96664.....56666666789999*********************999986 PP

>> PF07340.6  Cytomegalovirus IE1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.038        22     104     131 ..       2      29 ..       1      35 [. 0.87
   2 ?    9.0   0.0   0.00067      0.38     100     142 ..      33      75 ..      28      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.038
   PF07340.6 104 hmlkkytqteekftaafnnmggclqtal 131
                 +m +k  +++ k + a+nn+g  lq+  
  MMETSP0890-20130614|3269_1   2 QMYRKAIEVDPKNANAYNNLGHLLQNVR 29 
                 5899999******************975 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00067
   PF07340.6 100 kvkehmlkkytqteekftaafnnmggclqtaldildkvnepfe 142
                    e+m +k  +++ k++ a+nn+g  lq      d+ ++ f 
  MMETSP0890-20130614|3269_1  33 DQAEQMYRKAIEVDPKYAIAYNNLGHLLQHVRKKYDQAEQMFR 75 
                 45689*************************9999998888775 PP

>> PF00619.16  Caspase recruitment domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.036        21      43      71 ..      15      43 ..       7      53 .. 0.83
   2 ?    6.9   0.0    0.0085       4.8      48      72 ..      55      79 ..      48      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.036
                SSHHHHHHHHHHHHGCC-HHHHHHHHHHH CS
  PF00619.16 43 ttrrdkareLldlvqkkgeeacqifleal 71
                ++  +  ++Ll  v+kk+++a q+  +a+
  MMETSP0890-20130614|3269_1 15 ANAYNNLGHLLQNVRKKHDQAEQMYRKAI 43
                566778899************99877766 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0085
                HHHHHHHHHGCC-HHHHHHHHHHHH CS
  PF00619.16 48 kareLldlvqkkgeeacqiflealk 72
                  ++Ll  v+kk ++a q+f +a++
  MMETSP0890-20130614|3269_1 55 NLGHLLQHVRKKYDQAEQMFRKAIE 79
                5689*****************9986 PP

>> PF05209.8  Septum formation inhibitor MinC, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.11        61      22      46 ..      18      42 ..      15      46 .. 0.90
   2 ?    8.1   0.0    0.0034       1.9      20      46 ..      51      77 ..      49     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.11
   PF05209.8 22 tsnlervlqaLskkiaqapkffkka 46
                ++nl ++lq+  kk  qa ++++ka
  MMETSP0890-20130614|3269_1 18 YNNLGHLLQNVRKKHDQAEQMYRKA 42
                79******************99986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0034
   PF05209.8 20 lhtsnlervlqaLskkiaqapkffkka 46
                ++++nl ++lq+  kk  qa ++f+ka
  MMETSP0890-20130614|3269_1 51 IAYNNLGHLLQHVRKKYDQAEQMFRKA 77
                6899*********************97 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0024       1.4     157     191 ..      10      45 ..       2      57 .. 0.68
   2 ?    6.1   0.1     0.011         6     165     202 ..      54      93 ..      41     101 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0024
  PF00038.16 157 vevdaarkld.Ltkilkeiraqyeelaeknreeaee 191
                 v+ ++a+  + L + l+++r+++++  +++r+ +e 
  MMETSP0890-20130614|3269_1  10 VDPKNANAYNnLGHLLQNVRKKHDQAEQMYRKAIEV 45 
                 44444333334*******************997763 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.011
  PF00038.16 165 ldLtkilkeiraqyeelaeknreeae..ewykakleelqe 202
                  +L + l+ +r++y++  ++ r+ +e   +y+   ++l++
  MMETSP0890-20130614|3269_1  54 NNLGHLLQHVRKKYDQAEQMFRKAIEvdPNYNIARNNLSN 93 
                 46999***********999999876611466666666654 PP

>> PF12053.3  Domain of unknown function (DUF3534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.016       9.3      21      52 ..      26      57 ..      21      61 .. 0.89
   2 ?    5.0   0.0     0.031        18      21      52 ..      61      92 ..      55      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.016
   PF12053.3 21 ekvreliqkallrykkarakkpeswvkvhrLe 52
                ++vr+  ++a + y+ka++++p++ +  ++L 
  MMETSP0890-20130614|3269_1 26 QNVRKKHDQAEQMYRKAIEVDPKYAIAYNNLG 57
                689999******************99877775 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.031
   PF12053.3 21 ekvreliqkallrykkarakkpeswvkvhrLe 52
                ++vr+  ++a + ++ka++++p++ +  ++L 
  MMETSP0890-20130614|3269_1 61 QHVRKKYDQAEQMFRKAIEVDPNYNIARNNLS 92
                679999******************99877765 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0056       3.2       7      44 ..       5      41 ..       4      43 .. 0.90
   2 ?    3.8   0.0     0.074        42       7      44 ..      40      76 ..      40      78 .. 0.88
   3 ?   -2.5   0.0       7.1     4e+03      39      52 ..      88     101 ..      83     114 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0056
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02185.11  7 rkklekElkireGaenmlraletdkksvlqeaesklre 44
                rk +e+  k  ++ +n+ ++l++ +k+ +++ae++ r 
  MMETSP0890-20130614|3269_1  5 RKAIEVDPKNANAYNNLGHLLQNVRKK-HDQAEQMYRK 41
                6889999999999********999999.*******986 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.074
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02185.11  7 rkklekElkireGaenmlraletdkksvlqeaesklre 44
                rk +e+  k+  + +n+ ++l+  +k+  ++ae++ r 
  MMETSP0890-20130614|3269_1 40 RKAIEVDPKYAIAYNNLGHLLQHVRKK-YDQAEQMFRK 76
                6889999999999999***99999999.9****99885 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 7.1
                 XXXXXXXXXXXXXX CS
  PF02185.11  39 esklreseqkielL 52 
                  ++l++ +++++ +
  MMETSP0890-20130614|3269_1  88 RNNLSNYSNNVKIY 101
                 45666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       781  (0.057124); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.74
# Mc/sec: 476.03
//
Query:       MMETSP0890-20130614|3271_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-18   64.7   0.0    1.4e-17   63.6   0.0    1.6  1  PF00060.21 Ligand-gated ion channel
    0.00018   20.6   0.0    0.00047   19.3   0.0    1.7  1  PF00497.15 Bacterial extracellular solute-binding proteins, family 3
  ------ inclusion threshold ------
        1.2    9.3   9.2      0.056   13.6   1.6    2.1  2  PF06424.7  PRP1 splicing factor, N-terminal


Domain annotation for each model (and alignments):
>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.1e-21   1.4e-17       2     145 ..      50     309 ..      49     311 .. 0.93

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 3.1e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX.HHHHHHHHHHHXXXTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X-----SHHHHHTHS.........................................................................................................................------XXXX......XXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.........................................................................................................................xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
  PF00060.21   2 levWlsvlaayllvsivlflverfspyewrekrkeseveneftlsnslwfvlgalvqqgcdesprsvsgRilvavwwffvlillssYtAnLaAfltver.mqspiesledlakqt.........................................................................................................................kaeCstkkse......kssseLslenvagiFlilli 145
                  ++W++++   ++++i+ f++e+ + y   e           tl +++ ++l  ++ q++  +p    g++lv +w ++vli++ssYtAnLaAfl+ ++  +s+ +s+ d                                                                                                                               ++C++++++      +++++L+++++ g+F+i ++
  MMETSP0890-20130614|3271_1  50 YKLWILTVSTTIVTGIIYFFIEHSQAYTDAE-----------TLQDAIHLSLLQVT-QAGGFAPVTYGGKLLVLSWGMVVLIIISSYTANLAAFLVADNgSNSEYDSIYDVIGAGatvcvhtgyatqdlldenypeimqydttdeygnfyhgkcsalvteraqydvakessdiypscnfervgdaldstgggwaikgdysakcssllsqlltqyflqldldgtlsdlyddyldswtDKSCDSSSDTsdnddgSDEDALGIKEMTGVFVIHAL 309
                 689********************77776666...........9************9.9999************************************98345679999999988899**********************************************************************************************************************84477777776677788999*************9775 PP

>> PF00497.15  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-07   0.00047      81     224 ..     123     270 ..     116     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1e-07
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00497.15  81 pyftaglvilvrk.kdakkissiksladL..kgkkvgvqagstaedllkeelkkgakvveydnleealaaLaagrvdavvadspvlaylikknggkklvlv...deplegeeyaiavrkgdse.....Lrkainkalaelkedgtldkiyekwfg 224
                 +y  +  ++lv + +   + s+++s+ d+  +g +v+v +g +++dll e+++   ++ +yd+ +e  +    g++ a v++++    + ++++      +   ++ l + + ++a++ + s+     L + + + +++l  dgtl  +y+ ++ 
  MMETSP0890-20130614|3271_1 123 SYTANLAAFLVADnG---SNSEYDSIYDVigAGATVCVHTGYATQDLLDENYP---EIMQYDTTDEYGN-FYHGKCSALVTERAQYDVAKESSDIYPSCNFervGDALDSTGGGWAIKGDYSAkcsslLSQLLTQYFLQLDLDGTLSDLYDDYLD 270
                 566667788898634...4466777779967778****************775...7788888888866.999*********99888888887777777777779999999999999866554444438999999****************9985 PP

>> PF06424.7  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5       0.6   2.8e+03      54      67 ..     362     375 ..     332     403 .. 0.54
   2 ?   13.6   1.6   1.2e-05     0.056      35     112 ..     468     541 ..     449     547 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.6
   PF06424.7  54 skkkydkedeeadr 67 
                 +++++ ++ ee+++
  MMETSP0890-20130614|3271_1 362 NTASKLNNQEEQQD 375
                 11111222222222 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.2e-05
   PF06424.7  35 eeeeedekrlqdgdneglfskkkydkedeeadriyeeidekldkrrkkrrekkekeekeknekenpkiqeqFadlkrs 112
                 ++++e + +++d+d+++ +++k +d+  + a ++ ++i ++ +k+ k    k+ek+++e n++ +p+i+++F++  r+
  MMETSP0890-20130614|3271_1 468 DDDDESHADYSDHDDDSYLATKIKDHRRSSAASVLASILTRREKKGK----KEEKQHQEINNTIQPTIHSTFTEAERQ 541
                 5778889999999999******************9999665555444....445555566666789******999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       830  (0.060708); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:00.90
# Mc/sec: 1493.73
//
Query:       MMETSP0890-20130614|3287_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.4   1.2        5.8    6.7   0.0    2.5  2  PF05184.10 Saposin-like type B, region 1
       0.05   13.6   9.0      0.085   12.9   5.9    1.6  1  PF12033.3  Protein of unknown function (DUF3519)
        1.7    8.6   4.5        5.5    7.0   0.8    2.1  2  PF11556.3  Erythrocyte binding antigen 175
          2    7.1   7.0        2.4    6.8   4.8    1.1  1  PF05282.6  AAR2 protein
        9.5    3.8   9.9         10    3.7   6.9    1.0  1  PF00012.15 Hsp70 protein


Domain annotation for each model (and alignments):
>> PF05184.10  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0028       7.7      15      29 ..       4      18 ..       3      19 .. 0.89
   2 ?    6.7   0.0    0.0021       5.8      15      29 ..      70      84 ..      65      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0028
  PF05184.10 15 ekllkdnsteeeIik 29
                e+ lk+ +t++eI k
  MMETSP0890-20130614|3287_1  4 EDTLKNGKTKDEITK 18
                789**********76 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0021
  PF05184.10 15 ekllkdnsteeeIik 29
                e+ lk+ +t++eI k
  MMETSP0890-20130614|3287_1 70 EDTLKNGKTKDEITK 84
                899**********76 PP

>> PF12033.3  Protein of unknown function (DUF3519)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.9   3.1e-05     0.085      22     100 ..      12      86 ..       5      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
   PF12033.3  22 irvvlkdkkkgeklknhyvitsfedyrdnsesletsplktkhelsplnsaeenpTqkpLtsQedLlkksenlnettpep 100
                  +  + +   ++k  + y  +  e+ + ++e +e ++ ++++e+ p     + pT+k ++s ed+lk+ +   e+t+  
  MMETSP0890-20130614|3287_1  12 TKDEITKLSTEKKANESYDTQDVEKIKRKREAEEKEQVEKEQEIAP----LPPPTPKFIRSSEDTLKNGKTKDEITKLS 86 
                 5566778888999999999999************************....89**********************99855 PP

>> PF11556.3  Erythrocyte binding antigen 175
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.8     0.002       5.5       3      36 ..      11      44 ..       9      56 .. 0.82
   2 ?    3.0   0.1     0.035        95       3      21 ..      77      95 ..      75      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.002
   PF11556.3  3 ktreeiiklskknkCnnelslkyCdsiekkissg 36
                kt++ei kls+++k n+ + ++  ++i++k   +
  MMETSP0890-20130614|3287_1 11 KTKDEITKLSTEKKANESYDTQDVEKIKRKREAE 44
                89*******************9999999987664 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.035
   PF11556.3  3 ktreeiiklskknkCnnel 21
                kt++ei kls+++k n+ +
  MMETSP0890-20130614|3287_1 77 KTKDEITKLSTEKKANESY 95
                89**********9998765 PP

>> PF05282.6  AAR2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.8   0.00089       2.4     153     220 ..      17      90 ..       2      92 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00089
   PF05282.6 153 slvdsksstkeekdseeel..sesekkseddeeieeekk.....ekelyFtdilkrkwregatgseiteaslDks 220
                   ++++++++e++d  +++   + + + e++e++e+e++       +++F + ++++ ++g t+ eit++s +k 
  MMETSP0890-20130614|3287_1  17 TKLSTEKKANESYDT-QDVekIKRKREAEEKEQVEKEQEiaplpPPTPKFIRSSEDTLKNGKTKDEITKLSTEKK 90 
                 223333333333332.222332222233333344444446677799*************************9986 PP

>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.9    0.0037        10     501     586 ..       8      89 ..       2      99 .] 0.61

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0037
                 T----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHC....GGGSSHHHHHHHHHHHHHHHHHHT----HHHHHHHH CS
  PF00012.15 501 seglsedeiekmvkeaeesaeedkkkkeaieakneleelvy.slekkleee....kekvseaekekkveeaieelkeelegedkeeieakl 586
                 ++g ++dei k+ +e++++++ d++  e+i++k e+ee  + + e++++                k +++++++lk+  +++++ ++++++
  MMETSP0890-20130614|3287_1   8 KNGKTKDEITKLSTEKKANESYDTQDVEKIKRKREAEEKEQvEKEQEIAPLppptP---------KFIRSSEDTLKNGKTKDEITKLSTEK 89 
                 567899***************************99998543122222222233322.........35555555555554444433333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1625  (0.118856); expected 273.4 (0.02)
Passed bias filter:                      764  (0.0558806); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.88
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|3300_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.47s 00:00:00.69 Elapsed: 00:00:00.68
# Mc/sec: 271.35
//
Query:       MMETSP0890-20130614|3301_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       639  (0.0467379); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.43s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 311.53
//
Query:       MMETSP0890-20130614|3303_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.6   1.5        0.4   11.0   1.0    1.9  1  PF07813.7 LTXXQ motif family protein


Domain annotation for each model (and alignments):
>> PF07813.7  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   2.9e-05       0.4       3      60 ..       7      64 ..       2      65 .] 0.63

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.9e-05
   PF07813.7  3 egriaklkaeLkLtdaQkaalkalaea..araearelkakkeemramrkanfdetaperl 60
                +++++   ++ ++ ++Q+ al+++  a  +r++  +  ++++++ a+++  fd ++ +r 
  MMETSP0890-20130614|3303_1  7 APQQRSALDDFDPAPQQRSALDSFDPApqQRSALDSFDPAPQQRSALDD--FDPAPQQRS 64
                4566666677777888888888885441144444455777777777766..777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        40  (0.00292569); expected 273.4 (0.02)
Passed bias filter:                       30  (0.00219427); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.36s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 273.27
//
Query:       MMETSP0890-20130614|3299_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-74  250.6  28.3    1.9e-74  250.3  19.6    1.1  1  PF00999.16 Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.3  19.6   1.4e-78   1.9e-74       2     383 ..      70     476 ..      66     477 .. 0.90

  Alignments for each domain:
  == domain 1    score: 250.3 bits;  conditional E-value: 1.4e-78
                 XXXXXXXXXXXX.X.XXXXX.XXXXXXXXXXXXXXXXXXXX.....X......---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX......XXXXXXXXXXXXXXXXGGGXXHHHHHHHH..HHHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXX.XXXXXX...XXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXHHHHTTXXXX.XXXHHHHXXXHHHHXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00999.16   2 vllvllallagl.l.arrlk.lpevvglilaGlllGpsglglvepsl......eldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllalll......lilglslleallfgallsatdpvvvlavlk.eegrvnkrlgtlilgesvlnDavavvllavliala..geeagglsdlglliliflvvalgglllglviglllrlltkft..sgdrelevllvlllallaallaevlglsgilgaflaGlvlseyefsne..lsek.lepfgk...flfeplfFvlvGlsldlkvlltnglsllllvllllvaillgkllgvfllsrll........glslrealiigflglqrgavalalaalglslglisrel.falllavvlltvlvqGltlspllk 383
                 v+l l +l a + +  +r++ +pe+ + + +Gl++G   + + ++         + +e+++ l+lp+++F+aG+ l ++ +++n+++i ++a+ g+lis++++G+l+++ +       + g +  eal+fg+l+sa+dpv++l+++   e + +  l++l++gesvlnDava+vl++ + +++  +      s++g + + f+++ +g++++g+++gl+ + + ++t  ++ +  e++l +l+a++a+++ae++ lsgi++ f+aG++l++y+  n   +s+  +e ++     ++e+++F+++G+ ++   +   + + + +vll+++++llg++l +f+ls l+         +++r +++i+f+gl rga+a+al +    +   +re   +++l +v++t++v G+++ p+l+
  MMETSP0890-20130614|3299_1  70 VVLSLCILSA-YlIkKHRFYfMPESSAALCVGLIVGGLARLMTSN-EdelnfiSFKPELFFFLLLPPIIFEAGYTLRRKNFFRNLGTIAAFAVFGTLISTFIVGYLTFA-CakggliKVDGDDPMEALVFGSLISAVDPVATLSIMGsAELNCDPLLYSLVFGESVLNDAVAIVLFNTFKSYHleHIDSLNKSQVGEATVRFFGISIGSVFIGIITGLVCSYIFRHTriRDYPKYEIALLFLFAYGAYAVAESIELSGIMALFFAGIILAHYNSYNLskISQTtAEEIFAslaCVSETFVFMYMGMGVFTGRF---KSWDFNFVLLAIFFCLLGRALNTFPLSALSnrfrnqsnIIPIRMQFVIWFAGL-RGAIAFALSQNMSGA---NREAyETTTLSIVVFTTVVCGGLTEPMLR 476
                 3333434444.358899999********************95333.2489**********************************************************5.66**998556669***********************8777888999***************************9877888889999**************************************************************************555555111555575555556779***************6666...59***********************************88**************.*********988888...66665999999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:01.11
# Mc/sec: 1273.74
//
Query:       MMETSP0890-20130614|3298_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 614.07
//
Query:       MMETSP0890-20130614|3302_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-38  129.7   0.0    1.8e-36  125.5   0.0    2.0  2  PF00266.14 Aminotransferase class-V
  ------ inclusion threshold ------
      0.055   12.4   0.0      0.092   11.7   0.0    1.4  1  PF01212.16 Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0   2.6e-40   1.8e-36       2     342 ..      94     471 ..      93     485 .. 0.82
   2 !    2.0   0.0    0.0089        61     353     371 .]     551     569 ..     532     569 .. 0.83

  Alignments for each domain:
  == domain 1    score: 125.5 bits;  conditional E-value: 2.6e-40
                 B--TTTS----HHHHHHHHHHH.H-----------HHHHHHHHHHHHHHHHHHHHTT-.S-GGGEE---------HHHHHH---------EEEEETT--GGGTHHHHHHHHH---E...EEEE-B-----B-......GGGHHHH--TTEEEEEEESB-S----B--HHHHHHHHHH--........-EEEEE---STTTS---HHHHT-SEEE-----.---------EEE-HHHHHH----------EEE--S.---E......E--TTGGG---------------HHHHH.HH---HHHHHHHHHHHHHHHHHHTTSTT......-EEE--....TT----EEEE-----T.....TT---HHHH---B-B---TT- CS
  PF00266.14   2 yLdsaAttqkpqeVldalqeyy.tdyngnvhrsvhtlgkeatealeearekvaelina.eseeeiiFtsgttealnlvalslarslkagdeilvteaehhanlvpwqelakrtgak...vkvipvdeegsld......ldeleklltpktklvaithvsnvtGvvqpveeiaklakeag........alvvvDaaqavghipidvkklgvDflafSgHK.llgPtGiGvlyvrrellekleplklggemveevsl.eett......faeapskfeaGTpniagiiglgaaleyl.eeigleaiekhekelaeylyerLsalpg......vellgpak.aerrasivsfafkgvea.....edvatlLdergIavrsGhhca 342
                 yLd a+++   q+ +d +++ + t+ +gn+h+ +++ ++  t+a+e ar ++ e+++a ese+e+iFt+++t +l lva ++ ++ k+  e+ + +++h++ l  ++++a+ +ga+   v+ i+vd+  ++         + ++l ++   l a+   +n  G ++p++  a+++++++          v++Daa  +  +pi++ ++ vDfl++S  K + +PtG+G+l++r+e  e+l +   gg+ v+      +         +    +fe GT    gi +l+  ++ l   +g  aie h ++l+ yl +rL+al++      v ++gp++  ++r+ +v+f++ + ++      dv+++ +++gI+vr+G  c+
  MMETSP0890-20130614|3302_1  94 YLDWAGSALYTQQQIDDMAHDLkTHVYGNPHS-LSSSATLSTDAVESARLQILEFLGAsESEYEVIFTRSCTDSLRLVADAF-PWQKDMSEFRYLVQNHNSVL-GIRDVARSHGAHasaVEAIEVDSWLHYIqneqipFLKSDELNDKALHLFAYPGEENFAGEMFPMDWAAQIIRARKektnplsnWRVLIDAAKLAAAHPINLTQTPVDFLTMSFYKlFGAPTGVGALIARKETAEELTKCYWGGGSVTVAGAgRDQDddirvlKSRICERFEDGTVSFLGIAALKHGFKALaHVGGPRAIEIHTEALSSYLDDRLRALKHtngqsvVLVYGPDDrGHARGPVVNFNLLDRHGnilshIDVMQAAADHGIHVRAGVECN 471
                 9*****************99873678****87.555566699***************944789******************9.668*****************.**********9733355677765443332222213333444458899****************98777666543211222222579*****************************7778*************************8888877544447888877778899*********************77888999******************998222222356997651578899******777766677689******************8 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.0089
                 --EEE---TT--HHHHHHH CS
  PF00266.14 353 gtlRaSlyiynteeevdrl 371
                 g +RaSl++ +t ++vd+l
  MMETSP0890-20130614|3302_1 551 GSIRASLGYLTTYDDVDKL 569
                 89***************97 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05     0.092     159     211 ..     278     344 ..     247     432 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.3e-05
                 -EEEEE-E-HHHHHHHHT--HHHHH.TT-SEEEE-S---------.-EEE--HH..................H CS
  PF01212.16 159 iplhlDgARlaeaakslgeiakeia.syaDsvtislkKdlganvG.gilafrdk..................f 211
                  ++++D+A la a       + +++   +D +t+s++K +ga++G g+l+ r++                   
  MMETSP0890-20130614|3302_1 278 WRVLIDAAKLAAAH------PINLTqTPVDFLTMSFYKLFGAPTGvGALIARKEtaeeltkcywgggsvtvaG 344
                 56667777666554......44444367******************999999993333333333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.45s 00:00:01.36 Elapsed: 00:00:01.07
# Mc/sec: 1296.72
//
Query:       MMETSP0890-20130614|3304_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-30  105.0   1.5      5e-30  103.8   1.0    1.7  1  PF13012.1  Maintenance of mitochondrial structure and function
    5.1e-07   29.3   0.2    1.8e-06   27.5   0.0    2.0  2  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
      0.056   12.2   0.1      0.081   11.7   0.1    1.2  1  PF03239.9  Iron permease FTR1 family


Domain annotation for each model (and alignments):
>> PF13012.1  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   1.0   1.1e-33     5e-30       2     115 .]     103     216 ..     102     216 .. 0.99

  Alignments for each domain:
  == domain 1    score: 103.8 bits;  conditional E-value: 1.1e-33
   PF13012.1   2 EaeeigvehllrdlndqyysnlsrkleseqkmLknLhkklweiglyledveagklplnhsilrklqsllnllpnlnnkeleeefnvetndqllvvylgkldrkqialhelienk 115
                 Eaee+gvehllrd+nd ++s+l+ ++ +++ +L  L  kl e + yle v   klp+n++i ++lq+++nllpnln ++l +++ v+tnd+ l vy + l+r++ialh l++nk
  MMETSP0890-20130614|3304_1 103 EAEEVGVEHLLRDVNDPTVSTLANQIKHKMTALNTLRAKLAETKHYLELVLTDKLPVNNQIVYNLQEIFNLLPNLNIDSLVTAMLVKTNDMHLAVYCAALVRCIIALHALVNNK 216
                 9***************************************************************************************************************97 PP

>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     4e-10   1.8e-06      70     112 ..       1      39 [.       1      41 [. 0.94
   2 ?   -1.4   0.0      0.37   1.7e+03      42      64 ..     222     244 ..     207     266 .. 0.56

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 4e-10
  PF01398.16  70 ksellkklrgrervVGWYhshphitvwlshvdvrtqamyqmmd 112
                 +++++kk+++re++VG+Y+s+p+i    +++d+++ +++++++
  MMETSP0890-20130614|3304_1   1 MYRMYKKVNARENIVGFYSSGPKI----KENDIKIDELVRKYN 39 
                 689*********************....*********999987 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.37
  PF01398.16  42 veitnvfalprsetekdvdavel 64 
                 +e   ++a+  ++++k+ +  ++
  MMETSP0890-20130614|3304_1 222 LENSPSTATTEDDSSKNNKDTNP 244
                 34444455555555555444444 PP

>> PF03239.9  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.8e-05     0.081     239     298 ..     161     213 ..     149     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
   PF03239.9 239 skslskisllslllvaflaveregleivlaliGwantgplglivyaavwlvvlillglll 298
                  + +++ +++ +ll+   +  +++  +v+a+++ +n   ++l+vy a++++++i+l +l+
  MMETSP0890-20130614|3304_1 161 NQIVYNLQEIFNLLP---NLNIDS--LVTAMLVKTND--MHLAVYCAALVRCIIALHALV 213
                 567888888888888...999***..***********..99***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1060  (0.0775307); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 1080.32
//
Query:       MMETSP0890-20130614|3306_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.6   0.3       0.26   11.1   0.0    2.0  2  PF13558.1 Putative exonuclease SbcCD, C subunit
       0.15   11.3   0.6         14    4.8   0.1    2.2  2  PF08456.5 Viral methyltransferase C-terminal
        3.7    7.5   9.4        1.5    8.8   3.9    2.0  2  PF02993.9 Minor capsid protein VI


Domain annotation for each model (and alignments):
>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.7e-05      0.26       5      58 ..     207     261 ..     203     269 .. 0.77
   2 ?   -1.6   0.1       0.5   2.3e+03      30      39 ..     266     275 ..     257     278 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.7e-05
   PF13558.1   5 dyRnylsfelevr.dedgkekelsrrtgtlSGGEkqflvylalaaAlaalyssae 58 
                  +R+ l+++  v+ ++++k +++ r   t SG Ek  + ++a+aaAla + + ++
  MMETSP0890-20130614|3306_1 207 RVREQLRIDHGVEvQDRDKLWRVVRVPLTSSGTEKIDTQSTAIAAALATANQLSQ 261
                 578888888777744555556699***********************99877654 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.5
   PF13558.1  30 tgtlSGGEkq 39 
                 + + SGGE q
  MMETSP0890-20130614|3306_1 266 RPRESGGEEQ 275
                 5578****98 PP

>> PF08456.5  Viral methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0035        16      63      78 ..     108     123 ..      97     209 .. 0.79
   2 ?    4.8   0.1    0.0031        14      63     113 ..     218     267 ..     217     305 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0035
   PF08456.5  63 vEieDrikLwskkaks 78 
                 vE++D++k+w +    
  MMETSP0890-20130614|3306_1 108 VEVQDKLKIWTARPVG 123
                 9*********985444 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0031
   PF08456.5  63 vEieDrikLwskkaksngffltfedldekvrlyeelererkrisekivsek 113
                 vE++Dr kLw+  ++    +   e +d ++          +++s+++++  
  MMETSP0890-20130614|3306_1 218 VEVQDRDKLWRV-VRVPLTSSGTEKIDTQSTAIAAALATANQLSQQLAKRP 267
                 9*********98.55666666688888888888888888888888887765 PP

>> PF02993.9  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.19   8.6e+02     150     172 ..     137     159 ..      69     209 .. 0.50
   2 ?    8.8   3.9   0.00033       1.5      80     185 ..     242     342 ..     233     361 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.19
   PF02993.9 150 sleealkqkpapveepveesata 172
                  ++e ++q++++v+  +++   +
  MMETSP0890-20130614|3306_1 137 HAYEQQQQQQMYVQSQMQPRRHR 159
                 23333333333333333333333 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00033
   PF02993.9  80 veglgqginglvDigrqkvekdlekrlekrlgeeepatqeetve.dlkqaeekkkrpeaeetlvpaapepPsleealkqkpapveepveesatavlaldkpvtlelp 185
                 ++  +++i +++  ++q + ++l+kr ++  gee++  +  + + ++k +++ +  +e++++ ++a + pP   +   +   + e p ++s+t+++       ++lp
  MMETSP0890-20130614|3306_1 242 IDTQSTAIAAALATANQ-LSQQLAKRPRESGGEEQQGAEDDQKSqEPKRQAQDRSPDEERDSDIVALDTPPTSSPQHDTDIIKEESPPTKSNTDQS-----FSSPLP 342
                 56678889999988886.899999999999997666665555553566666666666666677777777777766665444455555555555444.....333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       775  (0.0566852); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 1121.37
//
Query:       MMETSP0890-20130614|3305_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-29  101.4   0.3      4e-29  101.3   0.2    1.0  1  PF02990.11 Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PF02990.11  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.2   2.9e-33     4e-29     143     247 ..      13     131 .]       2     131 .] 0.77

  Alignments for each domain:
  == domain 1    score: 101.3 bits;  conditional E-value: 2.9e-33
  PF02990.11 143 vkesscslaeespqelkedeeel......eltftYsVkwkesevkwasRwdkylka..eedaqihwfsiinslvivlfLsglvavillRtlkkdlaryneedeee......dkqeesgw 247
                 v +++cs++ +   +l +++++l      ++ +tY+V w++s +kwasRwd yl+      +++hwfsi+nsl+iv+ L+g+va+il R l++d+++yn+  +e+      d++ee+gw
  MMETSP0890-20130614|3305_1  13 VAPETCSTERAMDLDLVKKADHLfvqkgaKVLYTYDVVWRSSMIKWASRWDIYLSMdnAVPKKVHWFSIVNSLMIVVCLTGMVAMILARNLRRDISKYNRVPTEDeeaasgDTHEETGW 131
                 44455665533333333332222233333699**********************976655689************************************97766667899********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.57
# Mc/sec: 541.25
//
Query:       MMETSP0890-20130614|3309_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-09   35.3  27.4    7.7e-09   35.3  19.0    2.1  2  PF08524.6  rRNA processing
  ------ inclusion threshold ------
          2    7.5   8.9        2.7    7.1   6.2    1.2  1  PF01697.22 Glycosyltransferase family 92
        4.1    7.1  18.7        5.3    6.8  13.0    1.1  1  PF06217.7  GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF08524.6  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   6.0     0.031   1.4e+02      65     114 ..      44      98 ..      20     102 .. 0.79
   2 !   35.3  19.0   1.7e-12   7.7e-09      24     142 ..      93     213 ..      81     215 .] 0.73

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.031
   PF08524.6  65 ikedrklekKkkldekkeikkerkreqkekkeakvqkrlekie.....kkqkeRe 114
                  + ++ ++kK+k+ e +e++++++ +     ++ + +   ki+     +k+k+Re
  MMETSP0890-20130614|3309_1  44 FHSSKIMSKKRKMVEEREERRKKRPMVMSGGNEMRIDTIHKIQnhnpgHKKKQRE 98 
                 55678889999*9999999999999999999999999999999877777777777 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 1.7e-12
   PF08524.6  24 keikknltkkarlkkeylKllkkEgyave..pEke..saekkekkikedrklekKkkldekkeikkerkreqkekkeakvqkrlekiekkqkeRerrrkklskkTksGqPlmgpkindLLdKi 142
                 k+ +++  + a+l ++y K+  +E+ ++   p ++  ++e  +kk k +++  kKk     ke +k + ++++++ ++   +r++ +      R+r+rk lsk+Tk+GqP+m+ ++  LL+K+
  MMETSP0890-20130614|3309_1  93 KKKQREFYRNAQLLRKYRKVKAQEESSTIakPNNNdeEREPVVKKTKRSKEERKKKSTPFTKEWSKVQEEKNRKQADRDEAERRKSLA--VDARKRQRKLLSKRTKRGQPIMRHRVHALLSKL 213
                 6779***************999998765334777755666667777777777777777655555555555555555544444444443..556888899**********************97 PP

>> PF01697.22  Glycosyltransferase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.2   0.00059       2.7     199     277 ..      77     158 ..      31     167 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00059
  PF01697.22 199 vnstgiHfvrefapksgngilhvkkkeavlqHYrdqedgeneki....ktldkdlekmkkspkilepksklpaedfysdivsk 277
                   +  iH +++++p  ++++ +  ++  +l+ Yr+++ +e++ +    + +d++ e + k+ k  ++ +k++ + f ++ +sk
  MMETSP0890-20130614|3309_1  77 MRIDTIHKIQNHNPGHKKKQREFYRNAQLLRKYRKVKAQEESSTiakpNNNDEEREPVVKKTKRSKEERKKKSTPF-TKEWSK 158
                 4444577777777779999999999999*********999998899998888888888888877777777774333.333344 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  13.0    0.0012       5.3      42     186 ..      39     185 ..      18     202 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0012
   PF06217.7  42 i.....rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenspvgvqvlsetksihslqmlkhpqledsavelreeeklealpieeaaeeakekkkkkkrq.rakkpkekkakkkkkksekskkkvkkesadersk 186
                 i     +++++ +s+k++ v er++  ++r + ++  n+  ++  +k+ +  + ++ +++ +  ++++   + +++k  q e s++  ++++  e +p++++++ +ke++kkk++  +++  k++++k+ k+  +++ ++ k+  + + +k
  MMETSP0890-20130614|3309_1  39 IvdirfHSSKI-MSKKRKMVEEREERRKKRPMVMSGGNEMRIDTIHKIQNHNPGHK-KKQREFYRNAQLLRKYRKVK-AQEESSTIAKPNNNDEEREPVVKKTKRSKEERKKKSTPfTKEWSKVQEEKNRKQADRDEAERRKSLAV-DARK 185
                 25555466666.88888888888888888888888888877777777777766444.34444555444444444422.22233333344444445555555555555444444333022223333333222222222222222222.2233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1607  (0.117539); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 599.09
//
Query:       MMETSP0890-20130614|3308_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-05   21.5  27.1     0.0012   17.8  14.3    2.3  2  PF00261.15 Tropomyosin
    0.00011   21.8  22.9    0.00011   21.8  15.9    2.5  2  PF12718.2  Tropomyosin like
  ------ inclusion threshold ------
      0.011   14.1  26.0      0.021   13.2  18.0    1.4  1  PF05667.6  Protein of unknown function (DUF812)
      0.013   15.0   1.5      0.025   14.1   0.3    2.0  2  PF04002.10 RadC-like JAB domain
      0.013   14.8  28.5      0.023   14.0  18.7    1.9  2  PF00038.16 Intermediate filament protein
      0.022   12.8   7.4      0.039   11.9   5.1    1.3  1  PF00509.13 Haemagglutinin
      0.043   13.5  25.4       0.94    9.1   6.8    3.9  4  PF06009.7  Laminin Domain II
       0.71    9.6   9.1        1.2    8.9   1.1    3.5  3  PF06698.6  Protein of unknown function (DUF1192)
        0.9    8.5  10.1       0.87    8.6   5.2    2.3  2  PF03367.8  ZPR1 zinc-finger domain
        1.2    9.0  30.5       0.37   10.6   7.0    2.4  2  PF06818.10 Fez1
        1.5    8.7  31.0       0.21   11.5  12.6    2.7  2  PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
        2.1    8.1  20.3        1.1    8.9   4.7    3.8  3  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
        2.2    8.0   5.9       0.71    9.5   1.4    2.2  2  PF07439.6  Protein of unknown function (DUF1515)
        3.4    6.7  35.2       0.46    9.5  15.9    2.8  4  PF13851.1  Growth-arrest specific micro-tubule binding
          5    6.8  37.3       0.41   10.4   9.5    4.0  4  PF11559.3  Afadin- and alpha -actinin-Binding
        5.5    6.6  12.3        1.1    8.9   2.3    3.2  3  PF07889.7  Protein of unknown function (DUF1664)
        6.7    5.1  30.1        2.3    6.7  10.1    2.3  2  PF08317.6  Spc7 kinetochore protein
        9.2    5.2  19.7        5.8    5.8   3.0    3.1  3  PF04582.7  Reovirus sigma C capsid protein
        9.3    6.1  25.7       0.15   11.9   5.8    3.2  2  PF09403.5  Adhesion protein FadA


Domain annotation for each model (and alignments):
>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.3    0.0027       1.9     140     184 ..     368     412 ..     345     418 .. 0.89
   2 !   17.8  14.3   1.6e-06    0.0012      20     138 ..     423     544 ..     416     551 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0027
  PF00261.15 140 eskiaeLeeelkvvgnnlksLevseekaseredkyeekiklLtek 184
                   ++ +Le++lk +    ++L+ s     +r ++ eek++ L ek
  MMETSP0890-20130614|3308_1 368 YGEVDSLESRLKDLFCDYRQLKSSGGAREKRREQVEEKLEILREK 412
                 567899************************************987 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.6e-06
  PF00261.15  20 akekleeaekra...ekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlkeakeiaeeadrkyeEvarklvvvekdLeraeeraea 138
                 ++ekl+++ + +   +   +  ++ + r+q+lE+ele++++++++a+   +ea+ + +  +  +++l++r ++++  +++++++lk+a e +e  d +   ++ +l  v++ Le+++++++a
  MMETSP0890-20130614|3308_1 423 LMEKLHSSADSRqqhQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQA 544
                 455555444444000444456778899******************************************************************************************99876 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  15.9   1.6e-07   0.00011      16     141 ..     385     510 ..     379     512 .. 0.95
   2 ?    2.0   5.5      0.21   1.5e+02      36      75 ..     513     552 ..     505     601 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.6e-07
   PF12718.2  16 aeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEeerdeweekleelekklkea 141
                 + +l+++  + e++ e+ Ee+++ L +Kn  l  +  +l e+l+ + ++ ++++  + +  + + r q+LE+ele+++++++++t + +ea+ +  +++ +v+aL+e+ +++e  +  ++++lk+a
  MMETSP0890-20130614|3308_1 385 YRQLKSSGGAREKRREQVEEKLEILREKNAALLADKLELMEKLHSSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQA 510
                 567777777899***********************99************************************************************************************99987 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.21
   PF12718.2  36 eiksLqkKnqqlEeevekleeqlkeakekleekekkktea 75 
                 e +++  + +q+E+++ ++++ql+e+++kl+++ ++++++
  MMETSP0890-20130614|3308_1 513 EKEAIDLRASQAENQLSQVKAQLEETQHKLQATISTENTN 552
                 2233344556666666666666666666666666665555 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  18.0   2.9e-05     0.021     128     411 ..     242     543 ..     226     552 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.9e-05
   PF05667.6 128 asklerriaqslkaqlklpwvpafcr..........nskrkkessaalkrfddtelslefvt.kskekkstkelkeylsr.vlasvtv.qevaaeavapsllesnssrlkfaqevrlewnsqdleeyrkrkrqklekkiaell...rqaaqagteteersssaedladlvekfelesldkgsrftrtekeeeaaeaaaevekaevkteedrtkerekelealqeqidelessieeveeeikalkskikeveeeleevkeeneeleeevkik...krtvel.ledaeenvakLqalveasserll 411
                 ++++ ++i q ++    ++++p +             s   ++s + ++  ++++++l +v  +++ ++  +   e+ s+  ++   + + +a ++ + sll+ +ss ++ +++++   +s+     +  + ++le+++++l+   rq +++g + e+r +  e++ +++++ + + l +  ++ ++ + +++++   ++ + + ++ ++r ++ e+ele+ ++qi+++    +e ++ i +l+s++++++e++++ + e +++++e+k +   k +++l +++ae+++ + +a +e+++++l+
  MMETSP0890-20130614|3308_1 242 TQQRSSSISQRMAGLAAAGGIPPMVVspsmnqsnshVSPSMNQSNSHVQPDEPQQNQLAVVPgQETARPYFATNSEVQSQnRYDTYGLaAGNALAVQQTSLLAVQSSLSQLHEKID--RISPARVGGSYGEVDSLESRLKDLFcdyRQLKSSGGAREKRREQVEEKLEILREKNAALLADKLELMEKLHSSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQAleeKEAIDLrASQAENQLSQVKAQLEETQHKLQ 543
                 56677777777777777666665555455555655533334444444444444445444433133334444444444444444444330344444444455555555555554443..345555566666777777777777622244445555555555788888888888777777888888888889999999999999999*************************************************************9996433255667746789****************997 PP

>> PF04002.10  RadC-like JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.5   1.8e+03      15      57 ..     468     511 ..     456     524 .. 0.63
   2 ?   14.1   0.3   3.4e-05     0.025      28     100 ..     535     607 ..     506     613 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.5
                 --S-TTS-EEEEEEE-TTSBEE.EEEEEE-----GGGCSHHHHH CS
  PF04002.10  15 eladekqEefvvllldtknrli.aveevseGtlnsasvhpReif 57 
                    d+++   ++ +l+++ + + +  + +eG++++++ + ++ +
  MMETSP0890-20130614|3308_1 468 ATFDKNEASATISTLQSQVNALqERVTTNEGEMSRIQNELKQAL 511
                 44566666777777777765550556677899988887777665 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.4e-05
                 EE-TTSBEEEE..EEEE-----GGGCSHHHHHHHHHHTT-SEEEEEEE------S--HHHHHHHHHHHH---TTS CS
  PF04002.10  28 lldtknrliav..eevseGtlnsasvhpReifkralkenaaavilaHnhPsgdpepSqaDielTkrlkealellg 100
                 l +t+++l a+   e ++G++++++   Re++ +a+ ++  + + aH   s + + S +Di  Tk+lk++l+ + 
  MMETSP0890-20130614|3308_1 535 LEETQHKLQATisTENTNGGVSESNKLDREVLVKAVMNDTYKQLYAHFSSSAESTFSASDI--TKTLKSVLKAVT 607
                 555555555541155678******************************************9..888999988765 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  18.7   3.3e-05     0.023      20     187 ..     371     544 ..     366     550 .. 0.84
   2 ?    1.9   5.5      0.16   1.1e+02     100     194 ..     495     591 ..     489     614 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.3e-05
  PF00038.16  20 VraLEqqnkkLeakieeleekksaevsklkelyekelaelrkqldeltkerarleleldn...lreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakveslkeeleflkk...lheeEvkelqkqik.eqvnvevdaarkldLtkilkeiraqyeelaeknre 187
                 V +LE   k+L    ++l+     +++k +e  e++l+ lr++  +l +++ +l  +l++    r++++ l  k+++ +++++++E+el++ ++++ +at  + ++ a + +l+ +++ l++     e E++ +q+++k +  + e  + r +  ++ l+ ++aq ee  +k ++
  MMETSP0890-20130614|3308_1 371 VDSLESRLKDLFCDYRQLKSS-GGAREKRREQVEEKLEILREKNAALLADKLELMEKLHSsadSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQErvtTNEGEMSRIQNELKqALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQA 544
                 8899**************999.66666689999**********99999999999877765111678899999***********************************************99622256889*****9997544445555577788889999999999998887665 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.16
  PF00038.16 100 saEaelaklrkdldeatlarvdleakveslkeeleflkklheeEvkelqkqik.eqvnvevdaarkldLtkilke.iraqyeelaeknreeaeewyk 194
                 + E e+  ++ +l +a  ++  ++ ++ + +++l+ +k   ee  ++lq++i+ e+ n  v +++kld +  +k  + + y +l ++  ++ae++++
  MMETSP0890-20130614|3308_1 495 TNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQATIStENTNGGVSESNKLDREVLVKAvMNDTYKQLYAHFSSSAESTFS 591
                 4566666666666666666777777777777777777777777777777776666666666666666644444331334566666666666666666 PP

>> PF00509.13  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.1   5.4e-05     0.039     358     486 ..     436     576 ..     428     610 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.4e-05
                 -----B-BHHHHHHHHHHHHHHHHHHHHCHHH.HHH..HHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHCCCHHHHHHHHHHHHHHHHH........EEE-----EEESSSS-HHHH.HHHH----- CS
  PF00509.13 358 eGtgvAADkkstqkAidkitkklnsliekmnk.qfe..avekefselekrieelekkvdDsildvwsynaeLlvllenektldleDsevknLyekvrrqLren........aedegnGCFeiyHkCddeCl.esirngtyd 486
                 + +++A  +  tq+  ++++++l s  ++  +  f+  + +  +s l+++++ l+++v  +  ++   + eL  +le ++ +dl+ s+ +n   +v+ qL+e         ++++ nG      k d e l + + n+ty 
  MMETSP0890-20130614|3308_1 436 QHQALADKLSQTQTRCQQLENELESTKQQIAQaTFDknEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETqhklqatiSTENTNGGVSESNKLDREVLvKAVMNDTYK 576
                 44555666677************999887655246511567789********************************************************98622222222346777877777788777642667788875 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.061        44      12      84 ..     342     415 ..     333     427 .. 0.83
   2 ?    9.1   6.8    0.0013      0.94      10      77 ..     428     495 ..     419     513 .. 0.85
   3 ?    6.5   3.9    0.0087       6.3       8      65 ..     503     559 ..     498     572 .. 0.72
   4 ?   -1.2   0.1         2   1.4e+03      42      84 ..     566     608 ..     549     618 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.061
                 XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  12 akeVlkelegistnventk.aklsklngsveetnekvksankavrdarrsvrkleklapqlldkLkklkkleea 84 
                 + +V++ l+++++++++++ a +++  g+v+  +  +k+     r+ ++s  + ek  +q+ +kL+ l +++ a
  MMETSP0890-20130614|3308_1 342 LLAVQSSLSQLHEKIDRISpARVGGSYGEVDSLESRLKDLFCDYRQLKSSGGAREKRREQVEEKLEILREKNAA 415
                 56899999999999999986789999999999999999999999999999999999999999999988888776 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  10 etakeVlkelegistnventkaklsklngsveetnekvksankavrdarrsvrkleklapqlldkLkk 77 
                  +++  +++ ++++ ++++t+   ++l++++e t++++ +a+   ++a+  +++l+ +++ l ++ ++
  MMETSP0890-20130614|3308_1 428 HSSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERVTT 495
                 5566778999****************************************************999665 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0087
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7   8 AnetakeVlkelegistnventkaklsklngsveetnekvksankavrdarrsvrkle 65 
                 +++ +k+ l+e+e+i+ + ++  ++ls++++++eet++k++++ ++  + +  v++++
  MMETSP0890-20130614|3308_1 503 IQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQATISTE-NTNGGVSESN 559
                 66778888899999999999999999999999999999988665543.3344444444 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 2
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7  42 etnekvksankavrdarrsvrkleklapqlldkLkklkkleea 84 
                  ++++++++ k++    +s+ +++  a ++ + Lk++ k  +a
  MMETSP0890-20130614|3308_1 566 LVKAVMNDTYKQLYAHFSSSAESTFSASDITKTLKSVLKAVTA 608
                 5566666666666666677777777777777777766665555 PP

>> PF06698.6  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.077        55      27      53 ..     448     474 ..     430     479 .. 0.83
   2 ?    8.9   1.1    0.0016       1.2      23      55 ..     486     518 ..     470     519 .. 0.88
   3 ?   -1.0   0.0       1.9   1.4e+03      12      25 ..     605     618 ..     596     618 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.077
   PF06698.6  27 eeRIalLqaEIaRleaalakkkasraA 53 
                 + R ++L++E + +++++a+++  ++ 
  MMETSP0890-20130614|3308_1 448 QTRCQQLENELESTKQQIAQATFDKNE 474
                 47999**************98876665 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0016
   PF06698.6  23 veELeeRIalLqaEIaRleaalakkkasraAAe 55 
                 v+ L+eR++  ++E+ R++++l+++   ++A +
  MMETSP0890-20130614|3308_1 486 VNALQERVTTNEGEMSRIQNELKQALEEKEAID 518
                 788**************************9966 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.9
   PF06698.6  12 heigqDLslLSveE 25 
                 ++++q L++LS eE
  MMETSP0890-20130614|3308_1 605 AVTAQHLAKLSEEE 618
                 678999*****998 PP

>> PF03367.8  ZPR1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2         1   7.5e+02     107     146 ..     427     468 ..     400     471 .. 0.56
   2 ?    8.6   5.2    0.0012      0.87      66     149 ..     465     545 ..     443     556 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1
                 HHHHHHSS--..------GGG-HHHHHHHHH----------E CS
   PF03367.8 107 veeelskaqe..krdsedeekkkkieefleklkelkegkekl 146
                 ++++ +++q+  +   +  +++++++++ ++l+++k+   ++
  MMETSP0890-20130614|3308_1 427 LHSSADSRQQhqALADKLSQTQTRCQQLENELESTKQQIAQA 468
                 444444444311222233455666667777777666665555 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0012
                 GG-EEE--TT-EEEEGGGTEEE-.-------EEE----HHHHHHHHHSS--------GGG-HHHHHHHHH----------EEEE CS
   PF03367.8  66 lnrdvvksesasieipEldleiePgkalegelttvEGllerveeelskaqekrdsedeekkkkieefleklkelkegkekltli 149
                 +++     ++as  i  l+ +++   al+ ++tt EG ++r+++el++a e++++ d  +++  +++ +   +l+e+++kl+ +
  MMETSP0890-20130614|3308_1 465 IAQATFDKNEASATISTLQSQVN---ALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQAT 545
                 55555566789999999999995...899*********************8665555444444444444334555555555444 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   8.7     0.061        44      78     156 ..     388     467 ..     336     473 .. 0.81
   2 ?   10.6   7.0   0.00051      0.37      42     118 ..     474     549 ..     465     604 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.061
  PF06818.10  78 kkseaellrekagrleaelaelrealasagtlked.clllsesdeakarrqageetlrelrrqverlraeLkeerrrree 156
                  ks    + ++ +++e++l  lre+ a+  + k +   +l+ s + + ++qa +++l++ +++ ++l  eL++ +++  +
  MMETSP0890-20130614|3308_1 388 LKSSGGAREKRREQVEEKLEILREKNAALLADKLElMEKLHSSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQ 467
                 45555666677889999*******999985555441567999*****************************999887654 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00051
  PF06818.10  42 earaelqeseeklqelkdalrtktleLevceneLqrkkseaellrekagrleaelaelrealasagtlkedclllse 118
                 ea a++++ +++++ l++ + t + e+   +neL++  +e+e +  +a++ e++l++++++l+++ ++k +++  +e
  MMETSP0890-20130614|3308_1 474 EASATISTLQSQVNALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEET-QHKLQATISTE 549
                 77888889999999999999999999999999999999999999999999999999999998886.44444443333 PP

>> PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   5.1      0.87   6.3e+02       2      42 ..     396     437 ..     395     450 .. 0.71
   2 ?   11.5  12.6   0.00029      0.21      23     117 ..     448     541 ..     435     553 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.87
   PF10473.4   2 ekkqlqvlekLkes.ereadlLkdkvenLErELelseenqel 42 
                 ek+  qv+ekL    e++a+lL dk+e +E+   +++  q++
  MMETSP0890-20130614|3308_1 396 EKRREQVEEKLEILrEKNAALLADKLELMEKLHSSADSRQQH 437
                 899999*****976155677899******9844444444444 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00029
   PF10473.4  23 kdkvenLErELelseenqelvileaenskaevetLktkieemaeelkdLeldLvsvrsekenLakelqekqervseLeklnsslknlLeekeqek 117
                 + + ++LE ELe+ +++  ++ ++ +++ a ++tL++++++++e++ + e ++  +++e  +  +e +    r+s+ e+ +s++k +Lee +  k
  MMETSP0890-20130614|3308_1 448 QTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQ-HK 541
                 55789************************************************9999997777777788888****************9864.33 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.7     0.088        64      74     131 ..     388     456 ..     340     459 .. 0.65
   2 ?    8.9   4.7    0.0016       1.1      69     129 ..     477     542 ..     473     546 .. 0.80
   3 ?    3.1   0.4     0.097        70      78     107 ..     521     550 ..     517     574 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.088
   PF06148.6  74 l..........esplaaarkkvesvrsklseveeeveskik.ekkdleeekellklllkldevvekled 131
                 l          + ++++  + +++ +++l + + e+ +k+  ++ + +++++l++ l ++++++++le+
  MMETSP0890-20130614|3308_1 388 LkssggarekrREQVEEKLEILREKNAALLADKLELMEKLHsSADSRQQHQALADKLSQTQTRCQQLEN 456
                 1555555444356666666666666666666555555555505666677889999************97 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0016
   PF06148.6  69 eeleelesplaaarkkvesvrsklseveeeveskikekkdleeek.....ellklllkldevvekl 129
                   +++l+s+++a++++v+ +  ++s+ ++e+++ ++ek+++         +l ++  +l+e+ +kl
  MMETSP0890-20130614|3308_1 477 ATISTLQSQVNALQERVTTNEGEMSRIQNELKQALEEKEAIDLRAsqaenQLSQVKAQLEETQHKL 542
                 57999**********************************998777545555555555666665555 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.097
   PF06148.6  78 laaarkkvesvrsklseveeeveskikekk 107
                  ++a +++++v+++l+e+++++++ i+  +
  MMETSP0890-20130614|3308_1 521 ASQAENQLSQVKAQLEETQHKLQATISTEN 550
                 567788888888888888888888887654 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.9   4.2e+03      16      53 ..     377     413 ..     365     433 .. 0.47
   2 ?    9.5   1.4   0.00099      0.71      10      65 ..     451     509 ..     441     520 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5.9
   PF07439.6  16 evkelredlkrsedrsdasrakmyrkmdelvervtale 53 
                  +k+l  d ++ +  s  +r k  ++++e +e ++  +
  MMETSP0890-20130614|3308_1 377 RLKDLFCDYRQLK-SSGGAREKRREQVEEKLEILREKN 413
                 4555554444332.222333333334444433333333 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00099
   PF07439.6  10 lgtllaevkelredlkrs...edrsdasrakmyrkmdelvervtalegsvvklkadits 65 
                  ++l +e++  ++++ ++   ++ ++a+ + ++ +++ l ervt+ eg ++++++++ +
  MMETSP0890-20130614|3308_1 451 CQQLENELESTKQQIAQAtfdKNEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQ 509
                 56777788888888876521134455666789999*******************98865 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.7   4.1e+03     157     188 ..     169     194 ..     159     199 .. 0.72
   2 ?    7.9   9.4    0.0019       1.4      36     127 ..     385     476 ..     376     478 .. 0.92
   3 ?    9.5  15.9   0.00063      0.46      51     176 ..     431     552 ..     425     572 .. 0.92
   4 ?    6.7   6.9    0.0045       3.2     102     176 ..     479     552 ..     477     599 .. 0.65

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 5.7
   PF13851.1 157 eelekkeaqLeevlaaanldpaaleavsekle 188
                 +++ +ke+ L+ v +  +++++      ++++
  MMETSP0890-20130614|3308_1 169 KQVPEKEKTLKLVCSDTKINET------KTID 194
                 6777888888888888888888......4444 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0019
   PF13851.1  36 iaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdely 127
                 + +lk    ++ek+ ++++++ + l+e+ +++ +++ eL +kl   +  +q+ + l  kl +++   ++l+ e e+ +q++++   +++e +
  MMETSP0890-20130614|3308_1 385 YRQLKSSGGAREKRREQVEEKLEILREKNAALLADKLELMEKLHSSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEAS 476
                 667888888999***********************************************************************999999865 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00063
   PF13851.1  51 aeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvqqktelknllLekKlealneelekkeaqLeevlaaanld 176
                 a+  ++ + l ++L + +++ ++L+++l+   + kq+ ++++   +e    +++l+ + + l++r+++ e E  +++++ ++a+++ ++ ++l++   e++l++++++le+ + +L+ ++++ n +
  MMETSP0890-20130614|3308_1 431 ADSRQQHQALADKLSQTQTRCQQLENELE---STKQQIAQATFDKNEASATISTLQSQVNALQERVTTNEGEMSRIQNELKQALEE-KEAIDLRASQAENQLSQVKAQLEETQHKLQATISTENTN 552
                 6788999*******************997...5688899999999***********************************999987.899******************************999876 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0045
   PF13851.1 102 lknlkwesevleqrfekverErdelykkfeaaiqdvqqktelknllLekKlealneelekkeaqLeevlaaanld 176
                 +++l+ + + l++r+++ e E  +++++ ++a+++ ++ ++l++   e++l++++++le+ + +L+ ++++ n +
  MMETSP0890-20130614|3308_1 479 ISTLQSQVNALQERVTTNEGEMSRIQNELKQALEE-KEAIDLRASQAENQLSQVKAQLEETQHKLQATISTENTN 552
                 44555566666666666666666666666666554.556666666666666666666666666666666665544 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.24   1.7e+02      61     108 ..     342     390 ..     337     392 .. 0.89
   2 ?    4.3   0.9     0.041        30      56     114 ..     373     431 ..     368     433 .. 0.75
   3 ?   10.4   9.5   0.00057      0.41      57     117 ..     433     493 ..     422     496 .. 0.88
   4 ?    2.0   7.8      0.21   1.5e+02      55     112 ..     487     544 ..     485     552 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.24
   PF11559.3  61 lrkleaeierlqskierlk.tqleqlerelallqekerqlekklktleq 108
                 l+  ++++++l+ ki+r +  ++  +  e+++l+++ ++l +++++l++
  MMETSP0890-20130614|3308_1 342 LLAVQSSLSQLHEKIDRISpARVGGSYGEVDSLESRLKDLFCDYRQLKS 390
                 56678999***********999******************999999876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.041
   PF11559.3  56 sleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknek 114
                 sle +l++l +++ +l+s+    ++++eq e +l+ l ek ++l ++  +l +kl++ +
  MMETSP0890-20130614|3308_1 373 SLESRLKDLFCDYRQLKSSGGAREKRREQVEEKLEILREKNAALLADKLELMEKLHSSA 431
                 67888888888888888888888888888888888888888887777777777776655 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00057
   PF11559.3  57 leetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeel 117
                 + ++++ l   +++ q++ ++l+++le++++++a+++++++++ + ++tl++++++++e +
  MMETSP0890-20130614|3308_1 433 SRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERV 493
                 56778888888899999**************************************999987 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.21
   PF11559.3  55 esleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklkn 112
                 ++l+e++ ++e e++r q+++++  ++ e+   + ++++++  q +++l+++++kl++
  MMETSP0890-20130614|3308_1 487 NALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQA 544
                 68999*************************************************9986 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.4   2.4e+03     107     122 ..     344     359 ..     332     381 .. 0.62
   2 ?    8.9   2.3    0.0015       1.1      64     122 ..     445     503 ..     429     509 .. 0.60
   3 ?    1.3   0.5      0.34   2.5e+02      48      72 ..     524     548 ..     513     609 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.4
   PF07889.7 107 slkqvvegLesklesl 122
                 ++++ +++L++k++++
  MMETSP0890-20130614|3308_1 344 AVQSSLSQLHEKIDRI 359
                 3444444444444444 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0015
   PF07889.7  64 khLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesl 122
                  +   r ++l+++l+ +k+ + + + + +e+  ++s+++++v++l++ v++ e+ ++++
  MMETSP0890-20130614|3308_1 445 SQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNALQERVTTNEGEMSRI 503
                 23334666666666666666666666666666666666666666666666666666665 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.34
   PF07889.7  48 vtkqlekvseavasakkhLsqridn 72 
                   +ql +v+ ++++++++L + i +
  MMETSP0890-20130614|3308_1 524 AENQLSQVKAQLEETQHKLQATIST 548
                 5689999999999999999988854 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.1    0.0031       2.3     152     268 ..     372     487 ..     363     491 .. 0.75
   2 ?    4.3   6.5     0.017        12     208     267 ..     483     542 ..     480     551 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0031
   PF08317.6 152 eeLeenleelkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdsee.leklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekile 268
                 ++Le +l++l  d+++l+    + ++  ++++ek+e l+e+ a L   +d+le +++ +  ++ r++ ++l +k+++ +   ++le+el++ k++i++++ +k+e  + i+ ++++++
  MMETSP0890-20130614|3308_1 372 DSLESRLKDLFCDYRQLKSSGGAREKRREQVEEKLEILREKNAALL--ADKLELMEKLHsSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVN 487
                 5677788888888888888888888888888888888888877774..4445555554313567888888888888888888999999999999999988888888888888887766 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.017
   PF08317.6 208 seeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekil 267
                 ++++++l+e ++++e ++++ +++l++  ee+++++   +++++++s+++++++e +++l
  MMETSP0890-20130614|3308_1 483 QSQVNALQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKL 542
                 67899*************************************************998776 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.3   2.2e+02      42      92 ..     340     391 ..     330     395 .. 0.80
   2 ?    4.9   3.9     0.015        11      41     124 ..     403     489 ..     393     493 .. 0.54
   3 ?    5.8   3.0    0.0081       5.8      19      80 ..     489     550 ..     488     615 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.3
   PF04582.7  42 aataslsesvssissklsdls.adlqdvtsslddvkaelkelstevaalqss 92 
                 ++  ++++s+s++ +k+  +s a +++    +d +++ lk+l  + ++l+ss
  MMETSP0890-20130614|3308_1 340 TSLLAVQSSLSQLHEKIDRISpARVGGSYGEVDSLESRLKDLFCDYRQLKSS 391
                 4555678889999999999984567888889999999999999999999987 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.015
   PF04582.7  41 eaataslsesvssissklsdlsadlqdvtsslddvka...elkelstevaalqssvdslsseladlselvsahdaalsslqtevdan 124
                 e   + l+e  ++++++  +l  +l   + s ++ +a   +l++ +t  ++l++ ++s   ++a+ +   ++ +a++s+lq +v+a+
  MMETSP0890-20130614|3308_1 403 EEKLEILREKNAALLADKLELMEKLHSSADSRQQHQAladKLSQTQTRCQQLENELESTKQQIAQATFDKNEASATISTLQSQVNAL 489
                 444444444444444444445555555555544444411134444555667777777777777777777777777777777777665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0081
   PF04582.7  19 ltssvtinpGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelk 80 
                 l   vt+n G+++ +++ l +    +++++   s++ ++ls+++a+l+++ + l+  +++ +
  MMETSP0890-20130614|3308_1 489 LQERVTTNEGEMSRIQNELKQALEEKEAIDLRASQAENQLSQVKAQLEETQHKLQATISTEN 550
                 56689**************877667888999999*******************998876543 PP

>> PF09403.5  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.8   0.00021      0.15      23     118 ..     372     467 ..     363     475 .. 0.92
   2 ?    0.2   5.2      0.85   6.1e+02      40      81 ..     503     545 ..     468     552 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00021
   PF09403.5  23 aevvselkaleaeYqdLvkkeeaRfeeekeekeaaekevaklkelkaeleeklaklkeesktrfykdeykkLlkkyeeylkkleekieekeevise 118
                 +++ s lk l  +Y++L     aR ++  + +e++e    k++ l a+  e++ kl+  ++ r  ++   + l++ +   ++le+++e  +++i++
  MMETSP0890-20130614|3308_1 372 DSLESRLKDLFCDYRQLKSSGGAREKRREQVEEKLEILREKNAALLADKLELMEKLHSSADSRQQHQALADKLSQTQTRCQQLENELESTKQQIAQ 467
                 578899********************************************************99888888888999999***************97 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.85
   PF09403.5  40 vkkeeaRfeeekeeke.aaekevaklkelkaeleeklaklkee 81 
                 +++e +   eeke  + +a ++  +l ++ka+lee   kl++ 
  MMETSP0890-20130614|3308_1 503 IQNELKQALEEKEAIDlRASQAENQLSQVKAQLEETQHKLQAT 545
                 3344444445555544367788889999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2204  (0.161205); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:00.91
# Mc/sec: 1637.95
//
Query:       MMETSP0890-20130614|3311_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-38  128.3   0.0    4.3e-19   68.0   0.0    2.2  2  PF00677.12 Lumazine binding domain


Domain annotation for each model (and alignments):
>> PF00677.12  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   2.9e-20     4e-16      17      84 ..      21      87 ..       1      88 [. 0.89
   2 !   68.0   0.0   3.2e-23   4.3e-19       1      85 []     101     185 ..     101     185 .. 0.98

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 2.9e-20
  PF00677.12 17 ensvsitiklpekeltkvevedsiavnGvsLTvtevngdsftvdliketlkrtnlaslkvGdkVNlEi 84
                ++++++ +k + k +++  ++ siavnGv+LT t +ng++ftv l++etl+rt+l++ k+Gd++NlE+
  MMETSP0890-20130614|3311_1 21 GEGTEMIVKGS-KAVEDAYIGCSIAVNGVCLTATHLNGEEFTVGLSPETLRRTTLGKSKTGDRINLER 87
                56677788866.9999***************************************************8 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 3.2e-23
  PF00677.12   1 tGivegvaeiaeikekensvsitiklpekeltkveve.dsiavnGvsLTvtevngdsftvdliketlkrtnlaslkvGdkVNlEia 85 
                 +G+v+g+a iae+ ++++s++i +k p  el+ ++v  ++iav+G+sLTv +v++dsft+ l+++t+k  +l s+ vGdk NlE++
  MMETSP0890-20130614|3311_1 101 QGHVDGTARIAEMWQEDDSLWIRLKPP-AELMPFIVPkGYIAVDGTSLTVCDVDSDSFTLMLVEHTQKCIILPSKLVGDKCNLEVD 185
                 6************************77.********************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 650.44
//
Query:       MMETSP0890-20130614|3310_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.1  13.1     0.0083   15.8   0.0    5.2  5  PF00514.18 Armadillo/beta-catenin-like repeat
    1.5e-08   34.2   0.0    2.9e-08   33.3   0.0    1.4  1  PF04564.10 U-box domain
  ------ inclusion threshold ------
       0.34   11.1   8.7        1.1    9.4   1.8    3.5  3  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1    0.0061        28      12      40 ..     132     160 ..     132     161 .. 0.85
   2 !   15.5   0.0   2.2e-06    0.0098       3      41 .]     165     206 ..     163     206 .. 0.80
   3 !    4.2   0.0    0.0078        35       3      40 ..     209     247 ..     207     248 .. 0.89
   4 ?   -3.7   1.7       2.4   1.1e+04      32      37 ..     281     286 ..     274     287 .. 0.66
   5 !   15.8   0.0   1.8e-06    0.0083       1      26 [.     289     314 ..     289     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0061
                 HHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  12 GavppLvqLLksgdeevqeeAawALsNLa 40 
                 Gav + ++ L++gd +  e+Aa+ALs L+
  MMETSP0890-20130614|3310_1 132 GAVTRCINALNKGDLNDAEDAARALSRLC 160
                 677777888888888889**********9 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHCHHHHHHHHHHC...-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   3 enkqavieaGavppLvqLLk...sgdeevqeeAawALsNLaa 41 
                 +++ a ++ Ga++ L+  L+      e+++e++awAL NLa+
  MMETSP0890-20130614|3310_1 165 RCRIAARHRGALDLLIGILRrrdFIPESMKEACAWALANLAR 206
                 566666666788888888888888889*************97 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0078
                 HHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHH CS
  PF00514.18   3 enkqavieaGavppLvqLLk.sgdeevqeeAawALsNLa 40 
                 +n+ ++ ++G+v +L q     ++++++e+ a AL  +a
  MMETSP0890-20130614|3310_1 209 DNRFLIARSGGVCALGQVVElATNDNTREAGALALARMA 247
                 5888999**********************9999998776 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 2.4
                 HHHHHH CS
  PF00514.18  32 AawALs 37 
                 A+wALs
  MMETSP0890-20130614|3310_1 281 ALWALS 286
                 566665 PP

  == domain 5    score: 15.8 bits;  conditional E-value: 1.8e-06
                 CHHHHHHHHHCHHHHHHHHHHC-SSH CS
  PF00514.18   1 spenkqavieaGavppLvqLLksgde 26 
                 s+ +k+ v++aGavp+Lv+ L++ + 
  MMETSP0890-20130614|3310_1 289 SDATKRDVVDAGAVPVLVHILRKSSL 314
                 578899***************97665 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.3e-12   2.9e-08       1      69 [.      38     111 ..      38     113 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.3e-12
                 --GGGB-TTT-SB-SSEEE-TTT....-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHH CS
  PF04564.10   1 vPdefldpitlelmkdPvilPsg....itvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfle 69 
                 +P ef++ i+l +m  Pv l  +      +++s++e++l +r + +P+t  e+     ++ + el+++I+++ +
  MMETSP0890-20130614|3310_1  38 IPREFRCIISLDVMVIPVYLNGSdaknARYEKSAVEHWLGRRPNRCPITnHEHPMPLTIVEDVELRQRIEAWRM 111
                 8*******************766433357********************677777899**************76 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.8   0.00025       1.1       8      75 ..     141     234 ..     136     244 .. 0.67
   2 ?    2.7   0.7     0.029   1.3e+02      11      73 ..     230     311 ..     222     317 .. 0.50
   3 ?    0.4   0.0      0.16   7.4e+02      35      51 ..     363     379 ..     360     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00025
   PF13646.1   8 LekdpdpevraaaieaLg...........qlgseealpaLlelLkdsd...pevRraAaeaLgkl.............gdpealpaLlkllddde 75 
                 L +  d +  + a++aL+             +++ al++L+  L+  d   +++++a+a+aL++l             g   al + ++l+++d+
  MMETSP0890-20130614|3310_1 141 L-NKGDLNDAEDAARALSrlcefddrcriAARHRGALDLLIGILRRRDfipESMKEACAWALANLarngdnrfliarsGGVCALGQVVELATNDN 234
                 5.5556666677888888777777666554566699********999878678***********9665433333333333446777777777765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.029
   PF13646.1  11 dpdpevraaaieaLgqlgse.......ealpaLlelL..kdsdpevRraAaeaLgklg...........dpealpaLlklldd 73 
                   ++++r+a + aL++++         +a p L+ +L  +    +   aAa aL +l+           d  a+p+L+  l+ 
  MMETSP0890-20130614|3310_1 230 ATNDNTREAGALALARMAKTykywvvpAARP-LVYVLslTAAGHSALLAAASALWALSagsdatkrdvvDAGAVPVLVHILRK 311
                 4566777777777777666555555533333.333332422223344444444444422223444444455567777766654 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.16
   PF13646.1  35 aLlelLkdsdpevRraA 51 
                 a++ l+ +sd +vRr++
  MMETSP0890-20130614|3310_1 363 AIINLACSSDRRVRRNV 379
                 67888889999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.87
# Mc/sec: 1140.34
//
Query:       MMETSP0890-20130614|3313_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-09   36.3   0.0    2.3e-07   29.9   0.0    2.2  1  PF03133.10 Tubulin-tyrosine ligase family
     0.0065   15.1   0.1      0.017   13.7   0.1    1.8  1  PF14398.1  YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.4e-11   2.3e-07      58     284 ..      96     324 ..      81     334 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 3.4e-11
  PF03133.10  58 veeaekeesntwIvKpsasarGkgIrvfnklsdilki......................vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkssslneesnekkgkkwslqelekyleeirkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenl.kpwLlEvNasPdlksttkldaelkeeliddvln.v 284
                 +   ++++ ++ ++K + ++rG+gI+++++++di +i                       + + +  +v q+ i++    +++   +R+y l+t+    + ++Y+    R a  +Ysp ++  ++++ ++TN +  ++   +             ++ l+ ++   +  ++++ + s ++  +  +      ++ ++++ +f   + D++ d+ + +  LlEvN  P    +  l + + + li+  l+ +
  MMETSP0890-20130614|3313_1  96 NCLDHNDPTTWPVLKAPCGSRGDGIYLVSSVHDIANIleenakqaiaqgsdfiqglkknRKDQREPAYVLQQQISN--QANESRISIRVYLLITK---QNQFIYSIAESRAAPYPYSP-TNAQNNRSWFFTNGNGREDADRN------------LVNLLQDHSTLSTVFSFISGLDSEFKARMTLS----ESDQYESSHFSFCFGALDLMHDQRTgQTLLLEVNRAPAAPPEHGLSSAFRTHLINLALSlI 324
                 33445555566699******************************************985444555679*******9..6799************7...6679***************5.999999*******9988882222............22222222222333334444444444433333....3445555555555555677777655366677777777777777777777777777666654 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.5e-06     0.017      59     157 ..     108     204 ..     105     320 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-06
   PF14398.1  59 ylKPasGskGkgiirltkkeg.kyivrtedekkeqtkkfsslaklaselkkklskkkylvQqgidlieiegrpvDfRvlvqKneeGkWtvtgiavrvagk 157
                 +lK+  Gs+G gi+ +++ +   +i++ + +++   ++ s++ + +++++k + +  y++Qq i+ +  e r + +Rv +   ++ ++  +    r a++
  MMETSP0890-20130614|3313_1 108 VLKAPCGSRGDGIYLVSSVHDiANILEENAKQA--IAQGSDFIQGLKKNRKDQREPAYVLQQQISNQANESR-ISIRVYLLITKQNQFIYSIAESRAAPY 204
                 69999*************998777777777766..456666666677788888888*********9985555.569998877777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1249.53
//
Query:       MMETSP0890-20130614|3315_1  [L=823]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-33  113.7   7.5      2e-16   60.3   0.0    4.0  4  PF00005.22 ABC transporter
    1.5e-19   70.9   0.7    2.6e-07   30.7   0.0    4.7  4  PF13304.1  AAA domain
    2.1e-13   50.8   3.5    2.4e-06   27.9   0.4    3.1  2  PF13191.1  AAA ATPase domain
    3.8e-09   35.9   3.9     0.0024   17.0   0.0    4.2  3  PF02463.14 RecF/RecN/SMC N terminal domain
    1.2e-08   35.0   0.8     0.0025   17.8   0.1    3.6  2  PF13401.1  AAA domain
    1.7e-08   34.0   0.0     0.0075   15.7   0.0    2.7  2  PF05729.7  NACHT domain
    2.5e-06   27.8   0.0      0.096   13.0   0.0    3.3  2  PF08477.8  Miro-like protein
    3.5e-06   26.4   0.7      0.049   12.9   0.0    3.3  2  PF13481.1  AAA domain
    6.4e-06   26.2   1.8      0.045   13.8   0.1    3.8  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    8.3e-06   25.4   0.0       0.18   11.3   0.0    3.3  3  PF07728.9  AAA domain (dynein-related subfamily)
    1.5e-05   24.9   5.4      0.043   13.6   0.0    4.2  4  PF13521.1  AAA domain
    1.8e-05   25.4   0.5      0.043   14.4   0.0    3.8  2  PF13207.1  AAA domain
    2.8e-05   23.2   2.9        1.1    8.0   0.0    4.2  4  PF13175.1  AAA ATPase domain
    2.9e-05   23.1   0.0      0.025   13.6   0.0    2.5  2  PF03193.11 Protein of unknown function, DUF258
    3.5e-05   23.5   0.4       0.96    9.2   0.0    3.9  3  PF13173.1  AAA domain
    5.1e-05   22.6   0.0       0.14   11.6   0.0    2.6  2  PF13555.1  P-loop containing region of AAA domain
    6.2e-05   22.5   0.0       0.41   10.0   0.0    3.2  3  PF13479.1  AAA domain
    0.00023   20.7   0.9       0.36   10.5   0.0    3.4  3  PF13245.1  Part of AAA domain
    0.00027   20.3   0.0       0.34   10.2   0.1    2.5  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
     0.0003   20.1   0.4       0.31   10.3   0.1    2.7  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
    0.00048   19.7   0.3       0.66    9.5   0.1    2.7  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    0.00059   19.3   0.1          1    8.9   0.0    2.5  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0018   17.4   0.2        6.1    5.8   0.0    3.5  3  PF12846.2  AAA-like domain
     0.0024   17.8   0.1        2.6    8.1   0.0    2.6  2  PF00910.17 RNA helicase
     0.0029   17.4   0.0        4.6    7.1   0.0    3.1  2  PF01926.18 50S ribosome-binding GTPase
     0.0036   15.7   0.1        2.2    6.5   0.0    2.5  2  PF05783.6  Dynein light intermediate chain (DLIC)
     0.0047   17.1   0.2        3.9    7.6   0.0    3.5  3  PF13238.1  AAA domain
     0.0052   16.1   0.0        1.5    8.1   0.0    2.7  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0068   16.1   2.2        4.4    7.0   0.0    3.6  3  PF13671.1  AAA domain
     0.0073   15.6   4.6          1    8.6   0.0    3.4  3  PF00448.17 SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.012   14.7   0.1        1.8    7.5   0.0    3.0  3  PF01078.16 Magnesium chelatase, subunit ChlI
       0.02   14.1   0.2        0.8    8.9   0.0    2.4  2  PF00071.17 Ras family
      0.027   13.3   1.8       0.34    9.7   0.1    2.6  2  PF10236.4  Mitochondrial ribosomal death-associated protein 3
      0.028   14.0   0.4        7.9    6.0   0.0    2.7  2  PF03266.10 NTPase
      0.033   13.7   7.5       0.67    9.4   0.0    3.5  3  PF01637.13 Archaeal ATPase
      0.059   12.9   0.6       0.13   11.7   0.1    1.9  1  PF06394.8  Pepsin inhibitor-3-like repeated domain
        0.3    9.6  10.1        4.5    5.7   3.4    3.4  3  PF00503.15 G-protein alpha subunit
        0.4   10.8   3.1        6.8    6.9   0.0    3.2  3  PF10909.3  Protein of unknown function (DUF2682)
       0.52   10.5   0.0       0.52   10.5   0.0    4.5  3  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         8   2.8e+03      67      78 ..      69      80 ..      15     152 .. 0.54
   2 !   55.0   0.1   2.4e-17   8.6e-15      34     118 .]     245     377 ..     225     377 .. 0.80
   3 ?   -0.9   0.2       5.1   1.8e+03      31      67 ..     443     489 ..     411     518 .. 0.46
   4 !   60.3   0.0   5.6e-19     2e-16       1     118 []     591     701 ..     591     701 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 8
                HHHHHHHHH--- CS
                xxxxxxxxxxxx RF
  PF00005.22 67 krieevlekvgl 78
                +ri ++++k gl
  MMETSP0890-20130614|3315_1 69 DRILKAMQKAGL 80
                333333333333 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 2.4e-17
                 HHHEEEE-------.--BH.......................HHHHH----S--..................................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  34 klrigyipqdpllfpeltv.......................renldmakeekk..................................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +lr+gy++q+ +  +e ++                       r+         +                                   +k+++++l+++g+d+ ++++++ +LSgG+++rv+lA+a+l+ p++ll+DEPtn
  MMETSP0890-20130614|3315_1 245 HLRVGYLAQEVPVLNEDELqvsamdalmrgacarrkqaleaeRD---------EieaqlsnediqefqvltsrlcqvdaeleslqegsVQKKAQKALSALGFDKSMRQKKAIELSGGWQKRVELAAAVLEAPDVLLCDEPTN 377
                 67789999988888444444488888888888865444444422.........234444555577788888888889999999999999****************************************************8 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 5.1
                 -HHHHH.EEEE-------..--BHHHHHH----S--............-HH CS
                 xxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxx............xxx RF
  PF00005.22  31 kleklr.igyipqdpllf.peltvrenldmakeekk............tdk 67 
                  +++ r  ++i q+  +     +++++  +     +            + k
  MMETSP0890-20130614|3315_1 443 AAQQHRlDARIRQETAARdAAEKMKQKATAH----RkkskgtndnalrAAK 489
                 3333333444444444442222222222211....1222244444444333 PP

  == domain 4    score: 60.3 bits;  conditional E-value: 5.6e-19
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--....-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk....tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +TLl++++g++   +gei++ +           +lr++y+pqd+ +f  l+v   + +     +    +++ +++ l k+g+ e ++  + ++ SgGqk r+alA+a++  p++llLDEPtn
  MMETSP0890-20130614|3315_1 591 TTLLRTIAGLIPSRKGEIKYGH----------PNLRVAYVPQDHAEFLGLDVNTSISACAYLMNrfqiSETLARAQLGKFGIAEIAKL-QLNKCSGGQKARLALACATFHAPHVLLLDEPTN 701
                 8*******************94..........3467***********77777666655444433455699999999999999998888.9*******************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0033       1.2       3      17 ..     218     232 ..     217     236 .. 0.94
   2 !    9.1   0.0    0.0028      0.99     236     282 ..     348     391 ..     313     407 .. 0.75
   3 !   16.5   0.0   1.7e-05    0.0059       4      33 ..     582     609 ..     580     622 .. 0.76
   4 !   30.7   0.0   7.5e-10   2.6e-07     238     302 ..     674     733 ..     647     734 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0033
   PF13304.1   3 viiGpNgsGKSnlLk 17 
                 v+ G+Ng+GK++lL+
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLR 232
                 899**********96 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0028
   PF13304.1 236 dlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliell 282
                 +lS G ++   l++a l+a+   +vll DEp n+L+ + +  l + l
  MMETSP0890-20130614|3315_1 348 ELSGGWQKRVELAAAVLEAP---DVLLCDEPTNHLDLEGVIWLENYL 391
                 3488855555**********...************987665555444 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.7e-05
   PF13304.1   4 iiGpNgsGKSnlLkaldflfrdelvlglnl 33 
                  +G+Ng+GK++lL+ +++l    ++ g+++
  MMETSP0890-20130614|3315_1 582 CVGKNGCGKTTLLRTIAGL--IPSRKGEIK 609
                 59****************9..555555544 PP

  == domain 4    score: 30.7 bits;  conditional E-value: 7.5e-10
   PF13304.1 238 SdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                 S G+k  lal++a ++a+    vll+DEp n+L   +l +l+  l+e +n  + +i+ +H+  +l
  MMETSP0890-20130614|3315_1 674 SGGQKARLALACATFHAP---HVLLLDEPTNHLSHNALDALAAALNEYKN--AAIIVISHNRAFL 733
                 99****************...99***************************..*********7766 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.4   6.9e-09   2.4e-06      12     129 ..     204     317 ..     198     401 .. 0.72
   2 !   22.1   0.0     4e-07   0.00014      12     166 .]     567     726 ..     564     726 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 6.9e-09
   PF13191.1  12 LlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa....lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr 129
                 L+++  r  +g+   +++G+ G+GK++Llr+ a++ l  ++  +  + +++++  p +  +++    +++l+r  + +++++l++ r++++a l+      e+i+++q l++ l +  a+ +
  MMETSP0890-20130614|3315_1 204 LKRTTLRLVNGR-RYVLLGENGVGKTTLLRRMATHSL-PGFPPHLRVGYLAQEV-PVLNEDELqvsaMDALMRGACARRKQALEAERDEIEAQLSN-----EDIQEFQVLTSRLCQVDAELE 317
                 555555566777.788***************777744.3444444444444443.333333336778*****************************.....999999988888877776665 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 4e-07
   PF13191.1  12 LlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa..........lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartrrpklvlvlDD.lqwadresldlLeallerlselpllvv 166
                 L++++ + ++gs  ++ +G  G+GK++Llr++a  i  ++++ ++g+ ++  + +p  ++ ++          +  l+++    ++ + ++ + +  a +++  ++l+ + g q +  +l  a   ++    vl+lD+   ++ + +ld+L+a+l++ +++ ++v+
  MMETSP0890-20130614|3315_1 567 LTNVVVNLAPGS-RICCVGKNGCGKTTLLRTIAGLIPSRKGEIKYGHPNLRVAYVPQDHAEFLgldvntsisaCAYLMNRFQISETLARAQLGKFGIAEIAK--LQLNKCSGGQKARLALACATFHAP---HVLLLDEpTNHLSHNALDALAAALNEYKNAAIIVI 726
                 666777777777.899***************99999999999999988877777444444444666667767777777777777777777777777777777..555555555555555554444444...9*****98888888888888888888777677665 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2    0.0018      0.64      28     205 ..     218     411 ..     198     425 .. 0.51
   2 !    6.8   0.1    0.0088       3.1      27      44 ..     580     597 ..     560     612 .. 0.79
   3 !   17.0   0.0   6.9e-06    0.0024     130     209 ..     666     741 ..     616     751 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0018
                 EE--------HHHHHHH.HHH------.-------TTSS----------EEEEEEEE....E----E.......EEEEEEEE----EEEEE---EE-H.HHHHHHHHCTT--TT....................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  28 aivGpNGSGKsnvldAi.lFvLGeksakklrseklsdlihkskskakvksaeveitf....dnedkelvieeeevsitrrvkrkgeseykingkevtk.kevaellesagiske....................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                 +++G+NG GK+ +l  +  + L      +lr   l + +    ++++++   ++ ++       +  + +e+e+ +i+ ++++++ +e+++  ++  +     e l++  ++k+                    +LSgG ++ v la   A+ +     + l De   +LD + v  + ++l++++  +Q+iv s+++ +++ +
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMaTHSLPGFPP-HLRVGYLAQEVPV-LNEDELQVSAMDALMrgacARRK--QALEAERDEIEAQLSNEDIQEFQVLTSRLCQvDAELESLQEGSVQKKaqkalsalgfdksmrqkkaiELSGGWQKRVELAA--AVLE--APDVLLCDEPTNHLDLEGVIWLENYLQNTN-CTQLIV-SHDRAFVAAV 411
                 566666666666665442244433233.5666555554443.22333333333332222222111..22333333333333333333333322222211222223333333333444444444444499999999****888777663..3444..3345677*******************9887.888876.5555444433 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0088
                 EEE--------HHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAi 44 
                  + vG+NG+GK+ +l  i
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLLRTI 597
                 4679*********99888 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 6.9e-06
                 TT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-.SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  PF02463.14 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka.dklv 209
                 a+++ ++ SgG+k+ +al    A   ++   + llDe   +L ++   ++a  l+e + na +ivis+++ +l+ + ++l 
  MMETSP0890-20130614|3315_1 666 AKLQLNKCSGGQKARLAL----ACATFHAPHVLLLDEPTNHLSHNALDALAAALNEYK-NAAIIVISHNRAFLSACcNELW 741
                 45556689*****85554....555777777889*********************998.999********99988756655 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00016     0.056       8      27 ..     218     237 ..     211     305 .. 0.88
   2 !   17.8   0.1     7e-06    0.0025       7     122 ..     580     726 ..     576     732 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00016
   PF13401.1   8 vvtGesGvGKTtllrrlarq 27 
                 v+ Ge GvGKTtllrr+a  
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMATH 237
                 899*************9974 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 7e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae.........................karvvfveapastspkellqkllsalglpakgrltteell.ealqealrrrrt....rlliiDEaqr.Lseealeelrsllddetgvklvlv 122
                 ++++G  G+GKTtllr +a   + ++   +                         +++++ +  +    + +l+++ l+++g    ++l+ +++   + ++ + +++t     +l++DE  + Ls +al+ l   l+  ++ +++++
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLLRTIAGLIPSRKGEIKyghpnlrvayvpqdhaeflgldvntSISACAYLMNRFQISETLARAQLGKFGIAEIAKLQLNKCSgGQKARLALACATfhapHVLLLDEPTNhLSHNALDALAAALNEYKNAAIIVI 726
                 689*****************988777666699897888888777555555544433333344444444444445555555555555588888888888888888888899999******88889********998885555555554 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-05    0.0091       2      23 ..     216     237 ..     215     252 .. 0.84
   2 !   15.7   0.0   2.2e-05    0.0075       2      28 ..     579     605 ..     578     613 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-05
   PF05729.7   2 tvilqGeaGsGKTtLlqklasa 23 
                   +l Ge+G+GKTtLl+++a+ 
  MMETSP0890-20130614|3315_1 216 RYVLLGENGVGKTTLLRRMATH 237
                 57899**************976 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.2e-05
   PF05729.7   2 tvilqGeaGsGKTtLlqklasawakgk 28 
                  ++ +G++G+GKTtLl+ +a ++ ++k
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAGLIPSRK 605
                 57899**************98876665 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00028     0.096       2      25 ..     217     240 ..     216     290 .. 0.86
   2 !   11.0   0.0    0.0011       0.4       1      25 [.     579     603 ..     579     644 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00028
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp 25 
                  v++G+ gvGK++ll+++++ + p
  MMETSP0890-20130614|3315_1 217 YVLLGENGVGKTTLLRRMATHSLP 240
                 689****************98876 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0011
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp 25 
                 ++  vG+ g+GK++ll+ ++g   +
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAGLIPS 603
                 6888*************99987666 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014     0.049      29      87 ..     210     264 ..     176     323 .. 0.71
   2 !   10.0   0.1     0.001      0.37      30      58 ..     574     602 ..     562     726 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
   PF13481.1  29 llprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEds...eaelr 87 
                 +l+ g  ++l G+ g+GK+tl+  +a + + G      ++  ++rV yl+ E +   e+el+
  MMETSP0890-20130614|3315_1 210 RLVNGRRYVLLGENGVGKTTLLRRMATHSLPG------FP-PHLRVGYLAQEVPvlnEDELQ 264
                 57789999**************9999999965......43.489999999998865555554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.001
   PF13481.1  30 lprgsltllaGapgtGKStlalqlaaava 58 
                 l++gs ++ +G  g+GK+tl+  +a+ + 
  MMETSP0890-20130614|3315_1 574 LAPGSRICCVGKNGCGKTTLLRTIAGLIP 602
                 468******************99988665 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0044       1.5       2      22 ..     218     238 ..     217     297 .. 0.77
   2 !   13.8   0.1   0.00013     0.045       2     117 ..     581     745 ..     580     756 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0044
                 EEE-------HHHHHHHHHHC CS
  PF00004.24   2 llyGppGtGKTllakavakel 22 
                 +l G  G+GKT+l + +a+++
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMATHS 238
                 689*************99984 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00013
                 EEE-------HHHHHHHHHHCTHE.......................................................EEEEECCSSSSS...........T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT......S.TEEEEEE-SSGGGS-H CS
  PF00004.24   2 llyGppGtGKTllakavakelgve.......................................................fleisgsellsk...........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk......eskvivigatnrpdkldp 117
                 + +G  G+GKT+l + +a  + ++                                                       f                        g ++++++     a  +a p++l++DE  +  +++          ++++L ++l+++k+       +++ ++ + +n+ ++ld+
  MMETSP0890-20130614|3315_1 581 CCVGKNGCGKTTLLRTIAGLIPSRkgeikyghpnlrvayvpqdhaeflgldvntsisacaylmnrfqisetlaraqlgkF----------GiaeiaklqlnkCSGGQKARLALAC--ATFHA-PHVLLLDEPTNHLSHN----------ALDALAAALNEYKNAaiivisHNRAFLSACCNELWSLDS 745
                 679****************9743333344455555566666666666666665555555555555554444444444441..........0444444433224444444444444..45566.8999999988888777..........788888888888887666666555666666666666665 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0014      0.48       3      21 ..     218     236 ..     216     245 .. 0.91
   2 !   11.3   0.0   0.00052      0.18       2      37 ..     580     616 ..     579     625 .. 0.86
   3 ?   -2.1   0.0       7.5   2.6e+03      64      91 ..     689     717 ..     669     720 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0014
                 EEE------HHHHHHHGGG CS
   PF07728.9   3 lLvGppGtgKselaerlae 21 
                 +L+G+ G+gK++l +r+a 
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMAT 236
                 79**************996 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00052
                 EEEE------HHHHHHHGGGGB.S--EEEEE--TT-- CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal.nreveyvqltrdtt 37 
                 ++ vG+ G+gK++l + +a ++  r+ e++ ++ +++
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLLRTIAGLIpSRKGEIKYGHPNLR 616
                 5779******************988888888887765 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 7.5
                 -G-SEEEEESGG.G---HHHHHHHHHHHS CS
   PF07728.9  64 regeilvlDEve.raesevlnsLlsllee 91 
                   +++l+lDE + +++ ++l++L   l+e
  MMETSP0890-20130614|3315_1 689 HAPHVLLLDEPTnHLSHNALDALAAALNE 717
                 47899999996505569999999998887 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00012     0.043       1      68 [.     216     284 ..     216     305 .. 0.62
   2 ?   -1.0   0.0       3.9   1.4e+03      63      80 ..     355     374 ..     325     421 .. 0.72
   3 ?    0.1   1.8       1.7     6e+02      47      72 ..     435     461 ..     394     466 .. 0.74
   4 !    8.1   0.0     0.006       2.1       1      20 [.     579     598 ..     579     656 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00012
   PF13521.1   1 kivitGgpstGKTtlleaLaargypvv.pEvarevleekl.akgeealpweedllafaeavleaqleqea 68 
                 ++v++G  ++GKTtll+++a +  p + p     +l +++   +e++l+ +  + a+ ++  + ++++++
  MMETSP0890-20130614|3315_1 216 RYVLLGENGVGKTTLLRRMATHSLPGFpPHLRVGYLAQEVpVLNEDELQVS-AMDALMRGACARRKQALE 284
                 689*****************9966655344444555555554555555554.333444443333333333 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 3.9
   PF13521.1  63 qleqeaaa..aaskllfcDr 80 
                 ++ ++aaa  +a+++l+cD 
  MMETSP0890-20130614|3315_1 355 KRVELAAAvlEAPDVLLCDE 374
                 22333444689999999996 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 1.7
   PF13521.1  47 pwe.edllafaeavleaqleqeaaaaa 72 
                 +++  +  a ++++l+a+++qe+aa++
  MMETSP0890-20130614|3315_1 435 EKHqSEQAAAQQHRLDARIRQETAARD 461
                 333456788999999999999999843 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.006
   PF13521.1   1 kivitGgpstGKTtlleaLa 20 
                 +i+ +G  ++GKTtll+ +a
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIA 598
                 68999************998 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   0.00012     0.043       4      65 ..     219     298 ..     216     348 .. 0.70
   2 ?    6.5   0.0     0.035        12       1      20 [.     579     598 ..     579     631 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 0.00012
                 -B--TT---HHHHHHHHHH............S...TEEEEEGGGB--GGGS-B-----B....--SSGGGB-HHHHHHHH. CS
   PF13207.1   4 itGppGsGKsTlakeLaer............l...glpvlslddllreeglkelddger....eskdadadllaaildgla 65 
                 + G  G+GK+Tl ++ a +            +    +pvl+ d+l ++ +++ l +g      ++ +a  d+++a l +++
  MMETSP0890-20130614|3315_1 219 LLGENGVGKTTLLRRMATHslpgfpphlrvgYlaqEVPVLNEDEL-QVSAMDALMRGACarrkQALEAERDEIEAQLSNED 298
                 55778*************96666555544441566799******5.88888888888753223446666666666666653 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.035
                 EE--B--TT---HHHHHHHH CS
   PF13207.1   1 viaitGppGsGKsTlakeLa 20 
                 +i+ +G  G+GK+Tl + +a
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIA 598
                 68889**********99776 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.6       2.8   9.8e+02     242     292 ..      91     140 ..      14     158 .. 0.63
   2 ?    5.3   0.0     0.022       7.7      26      40 ..     218     232 ..     198     255 .. 0.87
   3 !    8.0   0.0    0.0032       1.1      26      42 ..     581     597 ..     546     640 .. 0.78
   4 ?    6.1   0.0     0.013       4.4     372     408 ..     693     726 ..     666     733 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.8
   PF13175.1 242 yeidnriektlskildeneesikknqenleeeinkklqkllkkklsnlkan 292
                  +++  ++++  +++++n  ++k   +  e++++k+l+++ k  l+n +++
  MMETSP0890-20130614|3315_1  91 QRKQRVLKIADDEAIERN-HNKKTSPKGREKKKKKNLANINKSSLKNPDDE 140
                 344444555555555555.34444555566666666666666666544333 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.022
   PF13175.1  26 viiGeNgsGKttILe 40 
                 v+ GeNg+GKtt+L 
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLR 232
                 899**********97 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0032
   PF13175.1  26 viiGeNgsGKttILeal 42 
                   +G+Ng+GKtt+L  +
  MMETSP0890-20130614|3315_1 581 CCVGKNGCGKTTLLRTI 597
                 789***********998 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.013
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiit 408
                 +ll+DEP  hl++++   l   L+e+ +     ii+ 
  MMETSP0890-20130614|3315_1 693 VLLLDEPTNHLSHNALDALAAALNEYKN---AAIIVI 726
                 9***************999999999877...444444 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     7e-05     0.025      31      59 ..     210     238 ..     179     296 .. 0.76
   2 !    6.9   0.0    0.0084       2.9      36      66 ..     578     608 ..     560     614 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7e-05
                 HHCTTSBEEEE-------HHHHHHH---- CS
  PF03193.11  31 ellkdktsvlvGqSGvGKSsLinallpel 59 
                 +l++++  vl+G+ GvGK++L+ +++ ++
  MMETSP0890-20130614|3315_1 210 RLVNGRRYVLLGENGVGKTTLLRRMATHS 238
                 3455699***************9998765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0084
                 SBEEEE-------HHHHHHH--------S-- CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpeldlkvgev 66 
                 + ++ vG+ G GK++L+ ++++    + ge+
  MMETSP0890-20130614|3315_1 578 SRICCVGKNGCGKTTLLRTIAGLIPSRKGEI 608
                 667889*************998777777776 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1        10   3.5e+03      49      76 ..     127     154 ..      87     160 .. 0.55
   2 !    9.2   0.0    0.0028      0.96       2      28 ..     214     244 ..     213     289 .. 0.78
   3 !    8.0   0.0    0.0065       2.3       7     102 ..     582     733 ..     577     741 .. 0.52

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 10
   PF13173.1  49 e.llelfleklke.kkkylflDEiqevpew 76 
                 + +++  l++  + +++   lDEi    ++
  MMETSP0890-20130614|3315_1 127 AnINKSSLKN--PdDEEQEALDEIDDFASA 154
                 1233333333..122333577887766554 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0028
   PF13173.1   2 rkilvitGpRrvGKttllkqlakell....k 28 
                 ++ +v+ G  +vGKttll+++a + l    +
  MMETSP0890-20130614|3315_1 214 GRRYVLLGENGVGKTTLLRRMATHSLpgfpP 244
                 567899***************9988865553 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0065
   PF13173.1   7 itGpRrvGKttllkqlakell...........keesilyinlddeelrkladpe...llelflek.lke.......kkky..lflDEiqev....................................pewedalkslvddgrnldviltGsnskll 102
                   G  ++GKttll+++a  l+           ++ ++ y+  d++e++ l+ ++      +++++ +         +  +  + + Ei ++                                     ++ dal   +++++n  +i+   n  +l
  MMETSP0890-20130614|3315_1 582 CVGKNGCGKTTLLRTIA-GLIpsrkgeikyghPNLRVAYVPQDHAEFLGLDVNTsisACAYLMNRfQ-IsetlaraQ--LgkFGIAEIAKLqlnkcsggqkarlalacatfhaphvllldeptnhlsHNALDALAAALNEYKNAAIIVISHNRAFL 733
                 578889******99987.3345766777777766777777777777744442222222234444321.112333221..12233444444444444444444444444444444444444444445566666666666666666666666666665 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00039      0.14      19      40 ..     211     231 ..     203     237 .. 0.82
   2 !    8.0   0.0    0.0049       1.7      25      46 ..     579     600 ..     566     610 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00039
   PF13555.1  19 idpkgkntlltGasGsGKSTll 40 
                 +  +g+ ++l G++G+GK+Tll
  MMETSP0890-20130614|3315_1 211 L-VNGRRYVLLGENGVGKTTLL 231
                 4.367889************98 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0049
   PF13555.1  25 ntlltGasGsGKSTllDAiqtl 46 
                     +G++G GK+Tll  i+ l
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAGL 600
                 66779**********9766554 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0012      0.41       5      24 ..     216     236 ..     212     306 .. 0.67
   2 !    8.3   0.1     0.004       1.4       5      23 ..     579     597 ..     577     602 .. 0.89
   3 ?   -1.5   0.0       3.9   1.4e+03     123     173 ..     752     803 ..     746     818 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0012
   PF13479.1   5 kvliYGkpGiGKTslaktl.p 24 
                 +++++G+ G+GKT+l++++  
  MMETSP0890-20130614|3315_1 216 RYVLLGENGVGKTTLLRRMaT 236
                 789*************98852 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.004
   PF13479.1   5 kvliYGkpGiGKTslaktl 23 
                 ++++ Gk G GKT+l++t+
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTI 597
                 6899************986 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.9
   PF13479.1 123 lsalgknvvftAhederkd.edggaytrfelklgkkvanelpgivDvvgrle 173
                  ++ ++ v+f A +d++    +gg   ++++  +k   +++ g +D vg  +
  MMETSP0890-20130614|3315_1 752 HRDADFSVLFAAYADRVLHsGTGGLSGTQTQISDKTRLDRIAGALDAVGASS 803
                 567789999********9999999999999999999999*******996554 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.014         5       9      33 ..     213     237 ..     205     279 .. 0.78
   2 !   10.5   0.0     0.001      0.36       4      36 ..     572     604 ..     569     626 .. 0.74
   3 ?   -2.1   0.0       8.4   2.9e+03      29      56 ..     709     734 ..     704     754 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.014
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaa 33 
                 + +  v+ G  G GKTt+l + + +
  MMETSP0890-20130614|3315_1 213 NGRRYVLLGENGVGKTTLLRRMATH 237
                 3677899*********555555544 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.001
   PF13245.1   4 eaala.gnpllvvtGgPGtGKTttlaaiiaall..a 36 
                    la g++++   G  G GKT tl++ ia l+  +
  MMETSP0890-20130614|3315_1 572 V-NLApGSRICC-VGKNGCGKT-TLLRTIAGLIpsR 604
                 4.4566899999.9********.*******999551 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 8.4
   PF13245.1  29 aiiaallaarekp.grsvllvaptgraak 56 
                 ++ aa+l   ++  ++ + +++ +++++ 
  MMETSP0890-20130614|3315_1 709 DALAAAL---NEYkNAAIIVISHNRAFLS 734
                 4455555...3344666999999888875 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0077       2.7      12      39 ..     211     238 ..     207     297 .. 0.90
   2 !   10.2   0.1   0.00097      0.34      10      36 ..     572     598 ..     567     610 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0077
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  12 ivqGqttlipGafgcGktvisqslskns 39 
                 +v+G + ++ G+ g+Gkt+++ +++ +s
  MMETSP0890-20130614|3315_1 211 LVNGRRYVLLGENGVGKTTLLRRMATHS 238
                 799******************9998876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00097
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  10 fPivqGqttlipGafgcGktvisqsls 36 
                 + ++ G +++ +G+ gcGkt+++  ++
  MMETSP0890-20130614|3315_1 572 VNLAPGSRICCVGKNGCGKTTLLRTIA 598
                 56778*****************99886 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.008       2.8       3      25 ..     216     238 ..     214     241 .. 0.86
   2 !   10.3   0.1   0.00089      0.31       3      23 ..     579     599 ..     577     612 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.008
   PF10662.4   3 killiGkvgaGKTtLtqalkgee 25 
                 + +l+G+ g+GKTtL +++  ++
  MMETSP0890-20130614|3315_1 216 RYVLLGENGVGKTTLLRRMATHS 238
                 6789*************998765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00089
   PF10662.4   3 killiGkvgaGKTtLtqalkg 23 
                 +i  +Gk g+GKTtL +++ g
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAG 599
                 8999*************9987 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0093       3.3       4      22 ..     218     236 ..     215     241 .. 0.85
   2 !    9.5   0.1    0.0019      0.66       2      22 ..     579     599 ..     578     609 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0093
                 EEE-------HHHHHHHHH CS
   PF03205.9   4 avvGpkdsGKTtlieklvn 22 
                 ++ G  ++GKTtl+++++ 
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMAT 236
                 56799**********9986 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0019
                 EEEEE-------HHHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvn 22 
                 ++ +vG+ + GKTtl++ ++ 
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAG 599
                 6889*************9975 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0063       2.2       6      37 ..     205     236 ..     200     240 .. 0.83
   2 !    8.9   0.0    0.0029         1       7      39 ..     569     601 ..     564     628 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0063
  PF02367.12   6 krlaellkagdvvlLsGdlGaGKTtlvkglak 37 
                 kr++  l +g+  +L G+ G GKTtl++ +a+
  MMETSP0890-20130614|3315_1 205 KRTTLRLVNGRRYVLLGENGVGKTTLLRRMAT 236
                 56666788888899**************9986 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0029
  PF02367.12   7 rlaellkagdvvlLsGdlGaGKTtlvkglakgl 39 
                 ++  +l +g+ ++  G+ G GKTtl++ +a  +
  MMETSP0890-20130614|3315_1 569 NVVVNLAPGSRICCVGKNGCGKTTLLRTIAGLI 601
                 66778999999*****************98766 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.45   1.6e+02      51     117 ..      85     147 ..      31     195 .. 0.67
   2 ?    5.7   0.0     0.018       6.5       5      25 ..     218     238 ..     217     248 .. 0.87
   3 ?    5.8   0.0     0.017       6.1       5      23 ..     581     599 ..     579     629 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.45
   PF12846.2  51 qvidlgegkgislNPfdigpteagaekleaeadphsreldlllalle.tdselrnrpledeeeaalsr 117
                 + id+ ++k      + i+++ea ++  +++++p++re++   +l + ++s l+n++ e+  + al++
  MMETSP0890-20130614|3315_1  85 ETIDYAQRKQR---VLKIADDEAIERNHNKKTSPKGREKKKKKNLANiNKSSLKNPDDEE--QEALDE 147
                 55555555555...4455555544554455558888888888888885455554444444..444433 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.018
   PF12846.2   5 lilGppGsGKSvllkklvlql 25 
                 ++lG+ G GK++ll++++ + 
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMATHS 238
                 589**************8765 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.017
   PF12846.2   5 lilGppGsGKSvllkklvl 23 
                 +++G+ G+GK++ll++++ 
  MMETSP0890-20130614|3315_1 581 CCVGKNGCGKTTLLRTIAG 599
                 689*************965 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.017       5.9       2      21 ..     218     237 ..     217     251 .. 0.88
   2 !    8.1   0.0    0.0075       2.6       1      20 [.     580     599 ..     580     619 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.017
  PF00910.17   2 wlyGpsgeGKStlakeLaka 21 
                 +l G++g+GK+tl +++a++
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMATH 237
                 689************99876 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0075
  PF00910.17   1 iwlyGpsgeGKStlakeLak 20 
                 i+ +G++g+GK+tl +++a 
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLLRTIAG 599
                 6889***********99765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.017         6       3      20 ..     218     235 ..     216     256 .. 0.88
   2 ?    7.1   0.0     0.013       4.6       1      21 [.     579     599 ..     579     623 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.017
                 EEE--TT---HHHHHHHH CS
  PF01926.18   3 aivGrpNvGKStLinaLt 20 
                 +++G+  vGK+tL++++ 
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMA 235
                 899************997 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.013
                 EEEEE--TT---HHHHHHHHC CS
  PF01926.18   1 evaivGrpNvGKStLinaLtg 21 
                 +++ vG+  +GK+tL++++ g
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAG 599
                 5899*************9985 PP

>> PF05783.6  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0069       2.4      37      65 ..     206     234 ..     199     238 .. 0.85
   2 !    6.5   0.0    0.0061       2.2      40      75 ..     572     607 ..     563     623 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0069
   PF05783.6  37 rsrsklPsgksvlvlGedgsGkttliakl 65 
                 r+  +l  g+  ++lGe+g Gkttl+ ++
  MMETSP0890-20130614|3315_1 206 RTTLRLVNGRRYVLLGENGVGKTTLLRRM 234
                 66678899999**************9876 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0061
   PF05783.6  40 sklPsgksvlvlGedgsGkttliaklqGveenkkGr 75 
                   l  g  +  +G++g+Gkttl+  + G+  ++kG 
  MMETSP0890-20130614|3315_1 572 VNLAPGSRICCVGKNGCGKTTLLRTIAGLIPSRKGE 607
                 56778889999******************9999995 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       2.5   8.8e+02      30      69 ..     100     119 ..      57     194 .. 0.63
   2 ?    7.6   0.0     0.011       3.9       3      33 ..     219     255 ..     218     310 .. 0.76
   3 ?    4.7   0.0     0.091        32       1      21 [.     580     600 ..     580     634 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 2.5
   PF13238.1  30 akengleeevddkidtkeskeldedkldelldkleenes....e 69 
                 a+++ +e  +++k                         s    e
  MMETSP0890-20130614|3315_1 100 ADDEAIERNHNKK------------------------TSpkgrE 119
                 2222222222222........................1111111 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.011
   PF13238.1   3 itGtpGvGKtTlakeLaerl......gdvlrdlaken 33 
                 + G  GvGKtTl+++ a +       +  + +la+e 
  MMETSP0890-20130614|3315_1 219 LLGENGVGKTTLLRRMATHSlpgfppHLRVGYLAQEV 255
                 66889**********9988556777766666666654 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.091
   PF13238.1   1 IlitGtpGvGKtTlakeLaer 21 
                 I+ +G+ G+GKtTl++ +a  
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLLRTIAGL 600
                 5667999********988654 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0042       1.5       3      22 ..     217     236 ..     215     310 .. 0.78
   2 ?    5.1   0.0     0.036        13       6      21 ..     583     598 ..     579     610 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0042
                 EEEE-------HHHHHHHHC CS
  PF02492.14   3 tvltGflGsGKTtLleklle 22 
                 +vl G  G GKTtLl+++ +
  MMETSP0890-20130614|3315_1 217 YVLLGENGVGKTTLLRRMAT 236
                 6899*************986 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.036
                 E-------HHHHHHHH CS
  PF02492.14   6 tGflGsGKTtLlekll 21 
                 +G  G GKTtLl+++ 
  MMETSP0890-20130614|3315_1 583 VGKNGCGKTTLLRTIA 598
                 7889*********986 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.019       6.6       3      22 ..     218     237 ..     217     334 .. 0.80
   2 ?   -2.1   1.1       8.5     3e+03      24      46 ..     448     471 ..     436     498 .. 0.47
   3 ?    7.0   0.0     0.013       4.4       3      20 ..     581     598 ..     580     626 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.019
   PF13671.1   3 llvGlpGsGKstlaerllkk 22 
                 +l G  G GK+tl++r++ +
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMATH 237
                 578999**********9854 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 8.5
   PF13671.1  24 g.yvrlsqdtlrkrlfgtdqqskt 46 
                     r++q t+ +  +++ +q+ t
  MMETSP0890-20130614|3315_1 448 RlDARIRQETAARDAAEKMKQKAT 471
                 244556666555544443333223 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.013
   PF13671.1   3 llvGlpGsGKstlaerll 20 
                  +vG  G+GK+tl++ ++
  MMETSP0890-20130614|3315_1 581 CCVGKNGCGKTTLLRTIA 598
                 689**********99876 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.003         1       4      24 ..     217     237 ..     215     306 .. 0.87
   2 ?   -0.4   1.3       1.7   5.9e+02      30      72 ..     406     445 ..     393     477 .. 0.71
   3 ?    5.5   0.1     0.027       9.4       4      24 ..     580     600 ..     577     609 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.003
                 EEEE-------TTTHHHHHHH CS
  PF00448.17   4 illvGlqGaGKTTtlaKLAal 24 
                 ++l+G +G+GKTT l ++A +
  MMETSP0890-20130614|3315_1 217 YVLLGENGVGKTTLLRRMATH 237
                 6899***********999976 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.7
                 --EEEEE--TSSHHHHHHHHHHHHHTT-EEEE-SS--EHHHHH CS
  PF00448.17  30 kkvllvaaDtfRaaAveQLktlaeklgvpvikekeekdpaava 72 
                   v+ va+D+  +  ++QL+ +a  l+   +++++++ +aa  
  MMETSP0890-20130614|3315_1 406 AFVAAVATDIITFDDQQQLQYFAGDLH--AFEKHQSE-QAAAQ 445
                 5578899*****************999..44433333.23333 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.027
                 EEEE-------TTTHHHHHHH CS
  PF00448.17   4 illvGlqGaGKTTtlaKLAal 24 
                 i  vG +G GKTT l  +A l
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLLRTIAGL 600
                 678**********98877765 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12        41      24      44 ..     216     236 ..     198     243 .. 0.80
   2 ?    7.5   0.0     0.005       1.8      17      49 ..     572     604 ..     561     611 .. 0.85
   3 ?   -1.5   0.0         3     1e+03     109     132 ..     693     717 ..     672     734 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.12
  PF01078.16  24 nlllvGppGsGKtmlakrlps 44 
                   +l+G  G GKt l +r+++
  MMETSP0890-20130614|3315_1 216 RYVLLGENGVGKTTLLRRMAT 236
                 45788************9975 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.005
  PF01078.16  17 iaaaGgHnlllvGppGsGKtmlakrlpsllppl 49 
                 +  a g  +  vG  G+GKt l + +++l+p+ 
  MMETSP0890-20130614|3315_1 572 VNLAPGSRICCVGKNGCGKTTLLRTIAGLIPSR 604
                 55666778899*******************975 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3
  PF01078.16 109 vLfLDE.lpefkrkvleaLRePled 132
                 vL+LDE   ++++++l+aL   l++
  MMETSP0890-20130614|3315_1 693 VLLLDEpTNHLSHNALDALAAALNE 717
                 8999994456788999999887765 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0023       0.8       2      21 ..     217     236 ..     216     242 .. 0.87
   2 ?    2.7   0.1      0.19        67       2      16 ..     580     594 ..     579     598 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0023
                 EEEE-------HHHHHHHHH CS
  PF00071.17   2 lvlvGdsavGKtslllrfve 21 
                  vl+G+++vGKt+ll r  +
  MMETSP0890-20130614|3315_1 217 YVLLGENGVGKTTLLRRMAT 236
                 79*************98766 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.19
                 EEEE-------HHHH CS
  PF00071.17   2 lvlvGdsavGKtsll 16 
                 +  vG++++GKt+ll
  MMETSP0890-20130614|3315_1 580 ICCVGKNGCGKTTLL 594
                 6789*********98 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00096      0.34      23      45 ..     214     236 ..     200     239 .. 0.84
   2 ?    1.9   0.0      0.23        82      24      40 ..     578     594 ..     572     598 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00096
   PF10236.4  23 tkrvvltGekgsGKSvlLaqava 45 
                  +r+vl Ge+g+GK++lL ++ +
  MMETSP0890-20130614|3315_1 214 GRRYVLLGENGVGKTTLLRRMAT 236
                 68****************88766 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.23
   PF10236.4  24 krvvltGekgsGKSvlL 40 
                 +r+   G++g+GK++lL
  MMETSP0890-20130614|3315_1 578 SRICCVGKNGCGKTTLL 594
                 678888*********99 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.023       7.9       3      20 ..     218     235 ..     216     239 .. 0.84
   2 ?    5.2   0.1      0.04        14       3      26 ..     581     604 ..     579     609 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.023
                 EEE-------HHHHHHHH CS
  PF03266.10   3 fiTGepgvGKtTlvkkvl 20 
                 ++ Ge gvGKtTl+++++
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMA 235
                 6779*********99876 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.04
                 EEE-------HHHHHHHHHH-... CS
  PF03266.10   3 fiTGepgvGKtTlvkkvlellkse 26 
                    G+ g GKtTl++ ++ l+ s+
  MMETSP0890-20130614|3315_1 581 CCVGKNGCGKTTLLRTIAGLIPSR 604
                 5679***********999887665 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2         5   1.8e+03      59      59 ..     104     104 ..      15     161 .. 0.59
   2 ?    9.4   0.0    0.0019      0.67      22      43 ..     216     237 ..     204     325 .. 0.87
   3 ?    7.5   0.1    0.0073       2.5      26      44 ..     583     601 ..     571     726 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5
                 - CS
  PF01637.13  59 e 59 
                  
  MMETSP0890-20130614|3315_1 104 A 104
                 2 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0019
                 EEEEE--TT---HHHHHHHHHH CS
  PF01637.13  22 iiviyGprrsGKTaLlkeilee 43 
                  +v++G  ++GKT+Ll++++  
  MMETSP0890-20130614|3315_1 216 RYVLLGENGVGKTTLLRRMATH 237
                 599**************98876 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0073
                 E--TT---HHHHHHHHHH- CS
  PF01637.13  26 yGprrsGKTaLlkeileel 44 
                  G  ++GKT+Ll+ i+   
  MMETSP0890-20130614|3315_1 583 VGKNGCGKTTLLRTIAGLI 601
                 699**********998766 PP

>> PF06394.8  Pepsin inhibitor-3-like repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00038      0.13      31      75 ..     407     451 ..     399     452 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00038
   PF06394.8  31 yvngfyvRdLtsseqeeLktfqkkvaqYkeslkkqikerveklfa 75 
                 +v       +t ++q++L+ f  +  ++++ +++q + +++ l a
  MMETSP0890-20130614|3315_1 407 FVAAVATDIITFDDQQQLQYFAGDLHAFEKHQSEQAAAQQHRLDA 451
                 565566666899**************************9998866 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.3       7.3   2.6e+03      89     138 ..      37     132 ..      21     164 .. 0.50
   2 ?    5.7   3.4     0.013       4.5      59     125 ..     215     311 ..     106     468 .. 0.72
   3 ?    4.3   0.0     0.034        12      60      82 ..     579     601 ..     573     757 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 7.3
                 XXHHHHHHHHHHHHHHHHHHHHXXXHHHHHHXSS................................................XHHHHHXXXHHHHX CS
  PF00503.15  89 eeraswraviylnivrsiktilealekleielsls.k.............................................seeneeqleklksr 138
                 e +++  avi+++ v ++  il+++e +++  +   k                                             +++++++l+++++ 
  MMETSP0890-20130614|3315_1  37 EMINYAAAVIQSDEVAAAVPILQEIEAPSDIGDRIlKamqkaglslsqetidyaqrkqrvlkiaddeaiernhnkktspkgrEKKKKKNLANINKS 132
                 555666666666666666666666666665544334133455555555555555555556655555555555555555555522333333333332 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.013
                 EEEEEEXXXXXXXHHHHHHHHHHHXXXXX..................XXXHHHHHHHHHHHHHHHHHHHHXXXHHHHHHXSS..............X CS
  PF00503.15  59 vklLlLGqgeSGKsTilkqfkllykpgfs..................reeraswraviylnivrsiktilealekleielsls..k..........s 125
                  + +lLG+++ GK+T+l+ + ++  pgf                   + +  ++ a+++  + r  +++  + ++ e +ls++  +          +
  MMETSP0890-20130614|3315_1 215 RRYVLLGENGVGKTTLLRRMATHSLPGFPphlrvgylaqevpvlnedELQVSAMDALMRGACARRKQALEAERDEIEAQLSNEdiQefqvltsrlcQ 311
                 5779************************999999999999999988444777888888888888888777777777777765433122233222220 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.034
                 EEEEEXXXXXXXHHHHHHHHHHH CS
  PF00503.15  60 klLlLGqgeSGKsTilkqfklly 82 
                 ++ ++G +++GK+T+l+ +  l 
  MMETSP0890-20130614|3315_1 579 RICCVGKNGCGKTTLLRTIAGLI 601
                 78899************987665 PP

>> PF10909.3  Protein of unknown function (DUF2682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         6   2.1e+03       1      22 [.      72      93 ..      72     102 .. 0.86
   2 ?    2.4   0.1      0.47   1.7e+02       7      45 ..     281     320 ..     277     334 .. 0.79
   3 ?    6.9   0.0      0.02       6.8      15      51 ..     387     423 ..     376     429 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 6
   PF10909.3  1 LivvqenvLdlasevdafLnsk 22
                L+++q++ L+l++e+ ++ + k
  MMETSP0890-20130614|3315_1 72 LKAMQKAGLSLSQETIDYAQRK 93
                7899**********99987665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.47
   PF10909.3   7 nvLdla.sevdafLnsktpdafkeleerLtkllieanaiv 45 
                 ++L+    e++a L++++ ++f+ l +rL ++ +e ++++
  MMETSP0890-20130614|3315_1 281 QALEAErDEIEAQLSNEDIQEFQVLTSRLCQVDAELESLQ 320
                 566554159*********************9988877776 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.02
   PF10909.3  15 vdafLnsktpdafkeleerLtkllieanaivFdekqk 51 
                  +++L++++ +++    +r +  ++ ++ i+Fd++q+
  MMETSP0890-20130614|3315_1 387 LENYLQNTNCTQLIVSHDRAFVAAVATDIITFDDQQQ 423
                 589******************************6664 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   3.0       4.8   1.7e+03     100     192 ..     108     131 ..       4     165 .. 0.48
   2 ?    2.5   8.9      0.41   1.4e+02      23     197 ..     218     495 ..     204     498 .. 0.62
   3 ?   10.5   0.0    0.0015      0.52      25      40 ..     583     598 ..     567     619 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.8
   PF13476.1 100 kkgkkvkkeilelleideleqfleellksdkeilpliaylgqerekekfklkekkkrleelekeleeledekellekllqeeekekeleelee 192
                 +                                  + +  +++                                    +e++k+k+l ++++
  MMETSP0890-20130614|3315_1 108 N---------------------------------HNKKTSPKG------------------------------------REKKKKKNLANINK 131
                 1.................................111111111....................................11112222222211 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.41
   PF13476.1  23 lItGpNGsGKTTildAi.claLygktsrlkks..........rgrgilkddveiek......................egkkkay.velsfeddkgrek....tylieeerektkkkgkkvkkeilelleideleqflee.....llksdke.............................................................ilpliaylgqer.........ekekfklkekkkrleelekeleeledekellek........llqeeekek........eleeleeeleel 197
                 ++ G+NG GKTT+l  + +  L g+++ l+ +          +            +                      e + +++ ++ls ed+++        +l++ ++e+ + +  +v+k++++ l+   +++ +++     l     +                                                               ++i +++q++          +ek + ++   +++ l+  + ++++ ++  ek                k         l + +++l+++
  MMETSP0890-20130614|3315_1 218 VLLGENGVGKTTLLRRMaTHSLPGFPPHLRVGylaqevpvlnE------------DelqvsamdalmrgacarrkqalEAERDEIeAQLSNEDIQE--FqvltSRLCQVDAELESLQEGSVQKKAQKALSALGFDKSMRQkkaieL-----SggwqkrvelaaavleapdvllcdeptnhldlegviwlenylqntnctqlivshdrafvaavATDIITFDDQQQlqyfagdlhAFEKHQSEQAAAQQHRLDARIRQETAARDAAEKmkqkatahR-------KkskgtndnALRAAKQRLAKI 495
                 789***********888789999*9999988766554444430............22223335555555666555554222233333333333333..134666667777777777777777777777777665555555222221.....24444458888888888888888888999999999999999999999999999999999987778888888888777777555332222333333666666666666666666666332333220.......123344444677777777666 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.0015
   PF13476.1  25 tGpNGsGKTTildAic 40 
                 +G+NG+GKTT+l  i 
  MMETSP0890-20130614|3315_1 583 VGKNGCGKTTLLRTIA 598
                 7***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1472  (0.107665); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 1.60u 0.39s 00:00:01.99 Elapsed: 00:00:00.89
# Mc/sec: 2215.96
//
Query:       MMETSP0890-20130614|3324_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-34  117.2   0.0    7.2e-34  116.9   0.0    1.0  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   5.3e-38   7.2e-34      67     286 ..       4     230 ..       1     235 [. 0.86

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 5.3e-38
  PF01062.16  67 plaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkderrrllrrtiayavllqvl.lrdisaavkkr..........lealveaglmteeeekleksknkpywvpivwaesl.qkarkegrlddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqd..eldlvtplltvlqfyffvglekvaeeLenPFGeddddlelnal 286
                 p a+++l  Fr+n++ydRWweark+WGa++n +r+l+rq   + + + + rr+    +a+ ++l+++ l+++ +++k            l++ +e  + +e  +++ +++++p  v + + + l ++a     l +   +++de+++ +++  g++ ri++tp+Pl+Yt ++ +++ ++ +++p +l         ++  +++++ +f+g+++++  Le+PF   + d  +n l
  MMETSP0890-20130614|3324_1   4 P-AVALLVTFRTNQAYDRWWEARKIWGAVINKTRDLTRQSHWFKDPE-NARRMSGLAVAFSYALNAHcLKGTMTNQKNHigehatvddkLASEIEPLIGKESTKEVLAAPHRPVEVCRLLTRCLaNEA-----LTPQIKARVDENVAFYSDFGGMCDRIQKTPMPLTYTRHTARFLTTWLMFVPSALLGagLAPAAVITGSIVISAIFLGIDELSALLEEPFSVLPMDSYCNGL 230
                 4.899**********************************99986665.699*************************9889977777777444444444777777777888888888888777774444.....67778899***********************************************98656666778899********************988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 845.38
//
Query:       MMETSP0890-20130614|3321_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00023   21.1   0.0    0.00051   20.0   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0041   15.3  54.0     0.0059   14.8  37.4    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1
  ------ inclusion threshold ------
       0.56    9.9   6.3       0.85    9.3   4.4    1.2  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   0.00051      23      78 ..     233     292 ..     206     295 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
                 S....SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEE CS
  PF00595.19  23 r....dkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtL 78 
                 +     +  +v+ v  ggaa+ +g+  G +++++N+ d ++++  ++ +++k  ++++ L
  MMETSP0890-20130614|3321_1 233 NngdkIEDTVVTMVIDGGAAQSKGIVLGSRLIQINDMDATKMPYSKNLDLVKTLSRPLVL 292
                 144557899**********************************99999988887776655 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  37.4   1.3e-06    0.0059     161     335 ..       9     203 ..       4     238 .. 0.45

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-06
   PF09770.4 161 veaqlqqrqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppq...ql..qqevq..qqlqqapsqapaqapl..paqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklp............qaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqea.......nqfreqlvqleqqer 335
                 +++ql   ++ + ++ +++ v++ + pp+q++ p  +++ +p+qy++pp    q+   +  +  qq++ +++q+   ++    ++ pq+  + qqqq++q++qq+ppq  +p +qqq++ ++++            q+q pp+qq +++ +++  q+++++++++ ++ +   +++ +  +       ++ + q ++++  er
  MMETSP0890-20130614|3321_1   9 IKKQL---ASIPSQAPAAQPVMAPPPPPQQYYAP--QPMMMPPQYNMPPVgypQQpgGY--PygQQMPSHQHQMYGAPQGtsSQMVPQHYGASQQQQQQQQQQQAPPQYGMPVPQQQISSQQQQrqpsqygtvpmsQQQAPPQQQIPPQYGMPVPQYQEQYPSIDTSESNGTRNKTIND-DddddenvEKLQVQMRSESAVER 203
                 45555...34444444555555555555544444..45555556666555553222233..2336666666555322222235556666666665555555555555544433333333222222223233333336666666666666666666666666666554333333322222.23554443222222222222222 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.4   0.00019      0.85      85     218 ..      67     248 ..      61     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00019
                 H--.---------------------------------------------------------...................................------------------------------------------------................------------------HHHH CS
  PF02932.11  85 rsp.rthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanssrleselgkepkk...............................sqvkvkvkegsgaetstsekksasskgeseaelspelkkavegvsyiaqh................lraededksvkedwkyvasviD 218
                 ++p ++h+m  + +  + + +p+    +++++++q+q++  ++     ++++  s++++++++                               +  +++ +e++g+ ++t + +++++++ ++ ++++ +++ave+     +h                 +++de++  k +  +v++viD
  MMETSP0890-20130614|3321_1  67 QMPsHQHQMYGAPQGTSSQMVPQHYGASQQQQQQQQQQQAPPQYGMPVPQQQISSQQQQRQPSqygtvpmsqqqappqqqippqygmpvpqyqeQYPSIDTSESNGTRNKTINDDDDDDENVEKLQVQMRSESAVERYTVRFEHeqklgmllerrqdwtpGQKKDENNGDKIEDTVVTMVID 248
                 677789999999999999999999988888888888888888888888888877777777666899999999999999*************9987888999999999999999999999999999**********998555555567777777777777766677777778889999***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       790  (0.0577823); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:00.90
# Mc/sec: 1160.90
//
Query:       MMETSP0890-20130614|3328_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 233.07
//
Query:       MMETSP0890-20130614|3327_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-18   66.8   0.0    2.4e-18   66.2   0.0    1.2  1  PF13489.1 Methyltransferase domain
    4.9e-11   43.0   0.0    8.5e-11   42.3   0.0    1.4  1  PF12847.2 Methyltransferase domain
    6.2e-10   38.6   0.0    8.5e-10   38.1   0.0    1.1  1  PF07021.7 Methionine biosynthesis protein MetW
    8.5e-09   35.6   0.0    1.4e-08   34.9   0.0    1.4  1  PF08241.7 Methyltransferase domain
    2.1e-08   34.3   0.0    3.5e-08   33.6   0.0    1.4  1  PF08242.7 Methyltransferase domain
    5.2e-07   29.5   0.0    1.5e-06   28.1   0.0    1.8  1  PF13659.1 Methyltransferase domain
      2e-06   27.3   0.0    2.8e-06   26.8   0.0    1.3  1  PF13847.1 Methyltransferase domain
     0.0038   16.5   0.0      0.006   15.8   0.0    1.2  1  PF05175.9 Methyltransferase small domain
  ------ inclusion threshold ------
      0.043   13.0   0.0      0.068   12.4   0.0    1.2  1  PF05401.6 Nodulation protein S (NodS)
       0.12   12.6   0.0       0.23   11.7   0.0    1.6  1  PF13649.1 Methyltransferase domain
       0.12   11.3   0.0       0.16   10.9   0.0    1.1  1  PF06325.8 Ribosomal protein L11 methyltransferase (PrmA)


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.9e-21   2.4e-18       7     157 ..      48     209 ..      42     213 .. 0.80

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 1.9e-21
   PF13489.1   7 reladllerllarlkpggrvLDiGcGtGillellaen.gf.dvtgvDpspaaigkakqaqksqfdeedaae....pagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas....lasdeafakwdyl...vprgthisffsaeslkelleeaGf 157
                   ++  ++rl +  ++  r+LD+GcG G +l+ l+e  +  +++g++p p+a   a+q  +++++  ++++    p+  +d i++++ leh   p+ llr+i   l+p G l +s pn +    + ++ +  +wdy+   v + th+++f+++s+ ++++ a+f
  MMETSP0890-20130614|3327_1  48 STYSPYISRLIP--ENATRILDVGCGAGLFLSKLREThRVeRIDGIEPHPIAAALARQHLDVVYNGIAEEVanqlPNSFYDAIILSDILEHAIYPDLLLRAIEPKLAPYGRLCVSIPNMRffseFVRPLLDGSWDYAphgVLDRTHLRWFTHTSFLKMAQAADF 209
                 566778899996..6678****************77624468******999999988888888855554444444777***************************************998555422444445566643335555******************99 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   6.9e-14   8.5e-11       3     110 ..      63     160 ..      61     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 6.9e-14
   PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller..fDavllkgltldallal.deprrvlealpkllkpggrlvie 110
                  rilD+GcG G+++  l + ++  +++g++p++ +++lar+++    +     +++g a+e +++l++  +Da++l++      l++  +p+ +l+a+  +l+p grl ++
  MMETSP0890-20130614|3327_1  63 TRILDVGCGAGLFLSKLRETHRVERIDGIEPHPIAAALARQHL--D-V-----VYNGIAEEVANQLPNsfYDAIILSD-----ILEHaIYPDLLLRAIEPKLAPYGRLCVS 160
                 58*****************99**********************..2.2.....45555533344455589********.....8888889999**************9987 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   6.9e-13   8.5e-10       6     151 ..      53     209 ..      50     238 .. 0.71

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 6.9e-13
   PF07021.7   6 liaelikpg.srvldlGcGdGellellkeekqvdg.rGleldeegvaecvak.Glsviqgdldkdlen.fedksfdyvvlsqtlqatrnpkevldel...lrigrraivsfPnfGhWrvrlsllskGrm...P..vtdalPyeWy.dtpnihlltikdf 151
                 +i +li+++ +r+ld+GcG G +l+ l+e++ v+   G+e     +a+++a+  l v+ + + ++++n  +++ +d ++ls  l    +p+ +l+ +   l    r  vs Pn+ ++   ++ l  G     P  v d   ++W+ +t+ +++   +df
  MMETSP0890-20130614|3327_1  53 YISRLIPENaTRILDVGCGAGLFLSKLRETHRVERiDGIEPH--PIAAALARqHLDVVYNGIAEEVANqLPNSFYDAIILSDILEHAIYPDLLLRAIepkLAPYGRLCVSIPNMRFFSEFVRPLLDGSWdyaPhgVLDRTHLRWFtHTSFLKMAQAADF 209
                 688999865279********************9752799975..5677766526888888777777651566677****************999865322666678899*****999887777777754111211234444455522444445444554 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.1e-11   1.4e-08       1      95 []      66     159 ..      66     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.1e-11
   PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 LdvGcG gl+l++l+e  +  r+ g+++++ + a a+++l+  +  + ++ a   +++++ +D++++s  leh   p+ +l+ i+  L p G+l++
  MMETSP0890-20130614|3327_1  66 LDVGCGAGLFLSKLREThRVERIDGIEPHPIAAALARQHLDVVYNGIAEEVAN--QLPNSFYDAIILSDILEHAIYPDLLLRAIEPKLAPYGRLCV 159
                 8****************9********************999965555555555..55789********************************9985 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   2.8e-11   3.5e-08       1      99 []      66     157 ..      66     157 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.8e-11
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                 L++GcG G +l+ l+e  +  ++ g++++p a + a+++l    n  +++v ++  +         +D+++ s+ l+h+  ++ +l+ i   L+p G+l
  MMETSP0890-20130614|3327_1  66 LDVGCGAGLFLSKLRETHRVERIDGIEPHPIAAALARQHLDVVYNGIAEEVANQLPNS-------FYDAIILSDILEHAIYPDLLLRAIEPKLAPYGRL 157
                 8****************8888889*********9999999999988888888888875.......6****************************99986 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.2e-09   1.5e-06       2     116 ..      63     162 ..      62     163 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.2e-09
   PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvlivp 116
                  r+ld+gcG G fl  + e     ++ g+E  p aaala++ l+        +v +g ++++a++l+ + +d+++ +    ++           d +l+a+++ l+p G+l++  p
  MMETSP0890-20130614|3327_1  63 TRILDVGCGAGLFLSKLRETHrVERIDGIEPHPIAAALARQHLD--------VVYNGIAEEVANQLPNSFYDAIILSDILEHA--------IYPDLLLRAIEPKLAPYGRLCVSIP 162
                 59*************99998777*****************9996........799999*****************97766633........2334668888999999999988776 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.3e-09   2.8e-06       3     112 ..      61     163 ..      59     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.3e-09
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdiee.leklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                  ++++lD+GCG+G +l +l e      ++ Gi+  + a +lA+++   l +  ++ i++++ + l++   + +D +i  + l++   p+  l+ ie  l p grl+v+ p+
  MMETSP0890-20130614|3327_1  61 NATRILDVGCGAGLFLSKLRE-THRVERIDGIEPHPIAAALARQH---LDV-VYNGIAEEVANqLPN---SFYDAIILSDILEHAIYPDLLLRAIEPKLAPYGRLCVSIPN 163
                 6789****************4.33344499999999999999994...334.355555666666775...569*********************************99887 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.9e-06     0.006      28     103 ..      58     129 ..      52     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.9e-06
                 -TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EE CS
   PF05175.9  28 pkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeveekkfdliv 103
                   + a ++lD+GcGaG+   +l + +   +++ ++ +  A ++a+++l+       + +a+++ +++++  +d+i+
  MMETSP0890-20130614|3327_1  58 IPENATRILDVGCGAGLFLSKLRETHRVERIDGIEPHPIAAALARQHLDVVY----NGIAEEVANQLPNSFYDAII 129
                 4446778*********99999999888888*****99999999999886543....34667777777777777776 PP

>> PF05401.6  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.068      44     117 ..      62     135 ..      55     151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.5e-05
                 B----EE------HHHHHGGGBSSEEEEE.S-TTT---HHHHTTT-SSEEEEES-TTT---SS-BS-EEE-S-GG CS
   PF05401.6  44 vanalevGcaaGafteklapyckrltvid.vvpeaierarervkksshisWvvsdvqqfsteekfdlivvaevly 117
                  +  l+vGc aG f  kl    +r+  id + p+ i+ a  r +     + ++ +v +   +  +d i+ +++l 
  MMETSP0890-20130614|3327_1  62 ATRILDVGCGAGLFLSKLRET-HRVERIDgIEPHPIAAALARQHLDVVYNGIAEEVANQLPNSFYDAIILSDILE 135
                 6788**************765.45555552456778888888777677888999***999**********99985 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.23       1      44 [.      65     105 ..      65     148 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00019
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerl 44 
                 ild+GCG+G  + +l + +   +  r+ g++  + a +la+++l
  MMETSP0890-20130614|3327_1  65 ILDVGCGAGLFLSKLRETH---RVERIDGIEPHPIAAALARQHL 105
                 8********9999999775...4499999999999999999887 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.16     161     258 ..      61     160 ..      53     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
   PF06325.8 161 egeevlDvGtGSGi.LaiaaakLgakkvvavDiDevAvkvakeNae..lNkveaklevallkelpkekad.vivaNILaevli..eLaedikelvkeggllilS 258
                 + +++lDvG+G+G+ L+        +++ ++   ++A   a++ ++  +N++++++    +++lp++ +d +i++ IL +++    L+  i   +++ g+l +S
  MMETSP0890-20130614|3327_1  61 NATRILDVGCGAGLfLSKLRETHRVERIDGIEPHPIAAALARQHLDvvYNGIAEEV----ANQLPNSFYDaIILSDILEHAIYpdLLLRAIEPKLAPYGRLCVS 160
                 45689********7467777777788888888888888888875542257777777....46666666662677999999996335777788888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.66
# Mc/sec: 980.33
//
Query:       MMETSP0890-20130614|3330_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-19   68.8   2.1    2.1e-19   68.5   0.2    2.0  2  PF09285.6  Elongation factor P, C-terminal
    3.9e-18   64.9   0.0    1.2e-17   63.4   0.0    1.8  2  PF08207.7  Elongation factor P (EF-P) KOW-like domain
    9.3e-14   50.7   0.0    1.7e-13   49.8   0.0    1.5  1  PF01132.15 Elongation factor P (EF-P) OB domain


Domain annotation for each model (and alignments):
>> PF09285.6  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.28   1.3e+03      19      32 ..      38      51 ..      28      52 .. 0.75
   2 !   68.5   0.2   4.5e-23   2.1e-19       2      56 .]     130     184 ..     130     184 .. 0.98

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.28
                --EEEEEE----EE CS
   PF09285.6 19 sstKpAtLetGlev 32
                 +tK   L tG++v
  MMETSP0890-20130614|3330_1 38 VRTKLKNLMTGATV 51
                56788889999987 PP

  == domain 2    score: 68.5 bits;  conditional E-value: 4.5e-23
                 EEEEEEE------------EEEEEE----EEEEETT-----EEEEES----EEEE CS
   PF09285.6   2 eleVvetepavkGdtassstKpAtLetGlevqVPlFIeeGekIkvdTrtgeYvsR 56 
                 e+eV++tep++  + +++++KpAtL+tG+e++VP+F+ +G+ Ikv+ ++++Y++R
  MMETSP0890-20130614|3330_1 130 EYEVTYTEPGIAKAASTKQMKPATLDTGAEISVPIFVDIGDTIKVNCAERTYLER 184
                 689**************************************************99 PP

>> PF08207.7  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   2.6e-21   1.2e-17       4      56 ..       7      59 ..       4      61 .. 0.95
   2 ?   -1.5   0.0      0.47   2.1e+03      14      20 ..     117     123 ..     103     160 .. 0.51

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 2.6e-21
                G-----EEE----EEEEEEEEEEE------EEEEEEEES----EEEEEEETT- CS
   PF08207.7  4 dfkkGlvieidgnpwrvvefehvkpGkgsAfvrtklrnlltGnivektfrsge 56
                +fk+Gl++e+ + +w++++f+++k  + +A+vrtkl+nl+tG++v++tfr +e
  MMETSP0890-20130614|3330_1  7 NFKNGLTVEFQDSVWKILSFQQTKSARQAAMVRTKLKNLMTGATVDQTFRISE 59
                7*************************************************887 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.47
                 ---EEEE CS
   PF08207.7  14 dgnpwrv 20 
                 ++n+  v
  MMETSP0890-20130614|3330_1 117 ESNIVDV 123
                 4444444 PP

>> PF01132.15  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   3.8e-17   1.7e-13       3      54 ..      70     120 ..      68     121 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 3.8e-17
                 -EEEEEE---EEEEEETTT--EEEEEGGGB.---TT-----EEE-EEE---E CS
  PF01132.15   3 emqYlYkdgdnyvFMdtetYEqielskealgdaakfLkEgmevtvllyngep 54 
                 ++ ++Y dgdn++FM+ et+++  ++++++ ++ + L Egm+v++++++ ++
  MMETSP0890-20130614|3330_1  70 DAIFSYVDGDNLIFMNSETFDETMIPAADI-ESSDLLREGMTVQLITWESNI 120
                 678***************************.99***************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 734.62
//
Query:       MMETSP0890-20130614|3341_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 236.40
//
Query:       MMETSP0890-20130614|3343_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   13.2   0.6       0.07   13.0   0.4    1.1  1  PF13963.1 Transposase-associated domain
        0.1   12.0   0.7       0.14   11.5   0.5    1.2  1  PF11706.3 CGNR zinc finger


Domain annotation for each model (and alignments):
>> PF13963.1  Transposase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4     1e-05      0.07      21      52 ..       2      34 ..       1      41 [. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
   PF13963.1 21 eeFlefafsnakeqe.kilCPCkkCknekrkkk 52
                +eF ++ f+++ ++e +i+C  kkC n  + + 
  MMETSP0890-20130614|3343_1  2 QEFARASFADEIKNEnNIFCGVKKCSNCSQARD 34
                6788888888888888***********988654 PP

>> PF11706.3  CGNR zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5     2e-05      0.14      13      38 ..       8      33 ..       6      34 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
   PF11706.3 13 lflDtsrngsRrWCsmarCGnrakva 38
                 f D+ +n +  +C+ ++C n   ++
  MMETSP0890-20130614|3343_1  8 SFADEIKNENNIFCGVKKCSNCSQAR 33
                69******************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|3338_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-50  170.7  23.0    2.2e-28   98.4   4.4    2.3  2  PF01699.19 Sodium/calcium exchanger protein
    2.5e-14   53.0   7.3    1.2e-07   31.6   0.2    2.9  4  PF13499.1  EF-hand domain pair
    5.4e-13   47.1   2.9    0.00023   20.1   0.1    4.1  4  PF00036.27 EF hand
    3.2e-12   45.1   1.9     0.0031   17.1   0.0    4.2  4  PF13405.1  EF-hand domain
    8.9e-12   44.3   0.8    1.4e-05   24.4   0.0    3.9  4  PF13833.1  EF-hand domain pair
    3.7e-06   25.9   9.0     0.0012   17.9   0.2    3.2  3  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.073   13.1   0.1       0.19   11.7   0.0    1.6  1  PF05036.8  Sporulation related domain
       0.11   12.4   3.3        6.4    6.7   0.1    3.2  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
          6    6.7  10.3      0.063   13.0   0.4    2.9  3  PF03988.7  Repeat of Unknown Function (DUF347)


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   4.4   1.5e-31   2.2e-28       4     138 ..     103     236 ..     100     237 .. 0.92
   2 !   77.9   6.0   3.2e-25   4.9e-22       1     114 [.     745     857 ..     745     860 .. 0.90

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 1.5e-31
  PF01699.19   4 slladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll.sdgrltvweglvllllyilylvl 138
                 +++ +++v+++e++a+ l+ls+ v+g+tl+A+g+sapEl++s ia + g+  l++g+ivGSa+fn+l+vi++c+l++p  e++   ++++++ +d+s ++++l +l++ +++ s++ +++we+l+ + ly+ y++l
  MMETSP0890-20130614|3338_1 103 IVCDELFVPALEILADKLNLSDDVSGATLMAAGGSAPELATSFIATMTGS-ALGIGTIVGSAVFNVLFVIAMCALFTPK-EMAPLRLTWWPLARDCSYYIMTLAMLFVWLVGpSPKLVQWWEALIQFGLYLGYVFL 236
                 78999*******************************************76.6**************************8.688999*************9995555555555**********************87 PP

  == domain 2    score: 77.9 bits;  conditional E-value: 3.2e-25
  PF01699.19   1 llislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivl 114
                 ++i ++++++v  ie+i+  +g+++ ++g+++lA+gts+p+l+ss+++a++g+gd+a++s +GS++f++ +++++++l++++ ++ ++   + ++ l++++lll++ll+++ ++
  MMETSP0890-20130614|3338_1 745 AWIGAFSYVMVRGIEIIGFQFGIPDFIMGVVFLAAGTSVPDLLSSVVVAKQGKGDMAVSSSIGSNIFDVAVGLPIPWLVYTIITQ-KSVRVTGPIPLSIGILLLMVLLVITSIA 857
                 59********************************************************************************865.4444456788888888888877777655 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       8.6   1.3e+04      29      54 ..     339     364 ..     334     369 .. 0.74
   2 !   28.4   0.2     8e-10   1.2e-06       6      65 ..     414     513 ..     405     514 .. 0.88
   3 !   31.6   0.2   7.6e-11   1.2e-07       7      61 ..     495     544 ..     490     546 .. 0.94
   4 !   13.4   0.0   3.8e-05     0.058       1      32 [.     524     555 ..     524     590 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 8.6
   PF13499.1  29 lgselsdeevrevldyifkelDkngd 54 
                 ++++ s e++++  ++i +++ ++ +
  MMETSP0890-20130614|3338_1 339 AQTNNSSEDIKNRTEKIYNCAASDTS 364
                 56666689999999999999887765 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 8e-10
   PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgsels............................................deevrevldyifkelDkngdGvlsfeEflqa 65 
                 F +lD+++ gyl+  +L+rll+ l    +                                            dee++++     +elD n+dG+++ +Ef  +
  MMETSP0890-20130614|3338_1 414 FAQLDVHNRGYLETRDLKRLLQTLARSGMppptivegdeeeditencssskekehskprppkaipskqrllysDEEIERL----KRELDANNDGTIDKNEFKVW 513
                 99*********************997766********************9998888888888888777777777777777....*****************876 PP

  == domain 3    score: 31.6 bits;  conditional E-value: 7.6e-11
   PF13499.1   7 kllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeE 61 
                 ++lD ++dg++dk+e++ +  ++     +  ++ ++++if+ +D +++G+++ +E
  MMETSP0890-20130614|3338_1 495 RELDANNDGTIDKNEFKVWYIQS-----EARLKAQVRRIFDIFDADKNGRVDVSE 544
                 68*******************98.....789999******************998 PP

  == domain 4    score: 13.4 bits;  conditional E-value: 3.8e-05
   PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgse 32 
                 +++++F+ +D d++g++d+ e+  ++++l  +
  MMETSP0890-20130614|3338_1 524 QVRRIFDIFDADKNGRVDVSEIDGVINALAGP 555
                 67999**************9998888877654 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0064       9.7       2      28 ..     410     436 ..     409     437 .. 0.91
   2 !   20.1   0.1   1.5e-07   0.00023       1      25 [.     489     513 ..     489     516 .. 0.88
   3 !   18.7   0.1     4e-07   0.00061       2      22 ..     525     545 ..     524     552 .. 0.88
   4 ?   -1.2   0.0      0.98   1.5e+03      17      27 ..     581     591 ..     579     593 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0064
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 ++  F+ +D+ + G+++  ++k++l++
  MMETSP0890-20130614|3338_1 410 VDATFAQLDVHNRGYLETRDLKRLLQT 436
                 7889********************987 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkea 25 
                 e++++ +e+D ++dG+I+++Efk +
  MMETSP0890-20130614|3338_1 489 EIERLKRELDANNDGTIDKNEFKVW 513
                 6778889***************976 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 4e-07
                 HHHHHHHHCTTTSSEBEHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEf 22 
                 ++++F++fD D++G+++++E 
  MMETSP0890-20130614|3338_1 525 VRRIFDIFDADKNGRVDVSEI 545
                 799****************96 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.98
                 BEHHHHHHHHH CS
  PF00036.27  17 IsfeEfkealk 27 
                 Isf +f+++++
  MMETSP0890-20130614|3338_1 581 ISFHDFQRWYE 591
                 9******9876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00038      0.57       3      28 ..     411     436 ..     409     442 .. 0.88
   2 !   14.2   0.0   1.7e-05     0.026       5      25 ..     493     513 ..     489     518 .. 0.84
   3 !   17.1   0.0     2e-06    0.0031       2      26 ..     525     549 ..     524     554 .. 0.87
   4 ?   -2.0   0.0       2.8   4.2e+03      16      26 ..     580     590 ..     578     593 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00038
                 H---GCC-------B---HHHHHHH. CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLrk 28 
                  + F ++D  + G+++  +L+++L++
  MMETSP0890-20130614|3338_1 411 DATFAQLDVHNRGYLETRDLKRLLQT 436
                 678********************985 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.7e-05
                 --GCC-------B---HHHHH CS
   PF13405.1   5 aFklfDkdgdGkidaeELrda 25 
                 + + +D ++dG+id++E++ +
  MMETSP0890-20130614|3338_1 493 LKRELDANNDGTIDKNEFKVW 513
                 55899*************976 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 2e-06
                 HH---GCC-------B---HHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                 +r++F++fD d++G++d +E+  ++
  MMETSP0890-20130614|3338_1 525 VRRIFDIFDADKNGRVDVSEIDGVI 549
                 699*****************97665 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 2.8
                 -B---HHHHHH CS
   PF13405.1  16 kidaeELrdaL 26 
                  i+++++++++
  MMETSP0890-20130614|3338_1 580 SISFHDFQRWY 590
                 69******987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3   4.6e+03      28      52 ..     411     435 ..     409     437 .. 0.59
   2 !   24.4   0.0   9.4e-09   1.4e-05      15      49 ..     479     512 ..     475     515 .. 0.86
   3 !   12.1   0.1   6.6e-05       0.1      25      46 ..     523     544 ..     522     545 .. 0.90
   4 ?    3.6   0.0     0.029        44       2      17 ..     578     594 ..     577     625 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3
   PF13833.1  28 dilfrefDtdgdGkisfeEFcvlle 52 
                 d+ f  +D  + G++   + ++ll+
  MMETSP0890-20130614|3338_1 411 DATFAQLDVHNRGYLETRDLKRLLQ 435
                 5556677777777775555555554 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 9.4e-09
   PF13833.1  15 allglkglseeevdilfrefDtdgdGkisfeEFcv 49 
                 ++++l   s+ee++ l re+D+++dG i+++EF+v
  MMETSP0890-20130614|3338_1 479 SKQRLL-YSDEEIERLKRELDANNDGTIDKNEFKV 512
                 555555.9*************************97 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 6.6e-05
   PF13833.1  25 eevdilfrefDtdgdGkisfeE 46 
                  +v+ +f+ fD+d++G+++  E
  MMETSP0890-20130614|3338_1 523 AQVRRIFDIFDADKNGRVDVSE 544
                 5899**************9877 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.029
   PF13833.1   2 kGlItreeLkral.all 17 
                 +++I++++++r + +++
  MMETSP0890-20130614|3338_1 578 QDSISFHDFQRWYeSTM 594
                 789********988887 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.1   3.2e+03       2      10 ..     411     419 ..     410     419 .. 0.81
   2 !   17.9   0.2   7.8e-07    0.0012       6      22 ..     495     511 ..     495     512 .. 0.93
   3 !   12.3   0.3   4.7e-05     0.071       3      20 ..     527     544 ..     525     549 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.1
                 HHHHHHH-- CS
   PF13202.1   2 kdtFrafDl 10 
                 ++tF ++D+
  MMETSP0890-20130614|3338_1 411 DATFAQLDV 419
                 579****95 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 7.8e-07
                 HHH--S----B-HHHHH CS
   PF13202.1   6 rafDlNgDGkIsreELk 22 
                 r++D+N+DG+I++ E+k
  MMETSP0890-20130614|3338_1 495 RELDANNDGTIDKNEFK 511
                 689*************7 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 4.7e-05
                 HHHHHH--S----B-HHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreE 20 
                  +F+ fD+++ G+++ +E
  MMETSP0890-20130614|3338_1 527 RIFDIFDADKNGRVDVSE 544
                 57**************99 PP

>> PF05036.8  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.19      33      65 ..     536     570 ..     515     580 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
                 ....-EEEE----EEEE--------HHHHHHHHHT CS
   PF05036.8  33 kv..avtsgggglyrVrvGpfasreeAqaalkkLk 65 
                 k   + +s  +g+   ++Gp+++ + A+aa+++++
  MMETSP0890-20130614|3338_1 536 KNgrVDVSEIDGVINALAGPYENDQLARAACERFR 570
                 335689999999*********************99 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.6       1.5   2.3e+03       9      67 ..     240     302 ..     237     305 .. 0.64
   2 ?    4.5   0.0      0.02        30      55      83 ..     409     437 ..     392     442 .. 0.84
   3 ?    6.7   0.1    0.0042       6.4      61     109 ..     495     544 ..     455     548 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.5
   PF10591.4   9 laefpeRlrdwlknvlaqlkerdeek....ehseelekeaekknskeckeaveWkFnqlDtnk 67 
                  +++ +++++wl    ++  ++ + +    ++  + +  +e+k  +++ +   ++ +q+D  +
  MMETSP0890-20130614|3338_1 240 NEKLENNVKSWLATRQQKRDKEPKANssslDNVDNIQGVKENKDNSSIPDDTSFEQKQIDYVE 302
                 667888888999887777666666655555555666666666666666666666666666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.02
   PF10591.4  55 aveWkFnqlDtnkdkvlsksElaplrapl 83 
                  v   F+qlD+++ ++l+++ l+ l + l
  MMETSP0890-20130614|3338_1 409 DVDATFAQLDVHNRGYLETRDLKRLLQTL 437
                 66778******************998776 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0042
   PF10591.4  61 nqlDtnkdkvlsksElap..lraplvklehCikeffksCDadkdkkisleE 109
                  +lD n+d+ ++k+E++   ++++  +l++ +++ f+  Dadk+++++++E
  MMETSP0890-20130614|3338_1 495 RELDANNDGTIDKNEFKVwyIQSE-ARLKAQVRRIFDIFDADKNGRVDVSE 544
                 689************996225555.88999999999999999999999988 PP

>> PF03988.7  Repeat of Unknown Function (DUF347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   4.1e-05     0.063      24      49 ..     150     178 ..     142     184 .. 0.82
   2 ?   -2.6   0.0       3.1   4.7e+03      13      23 ..     779     789 ..     774     814 .. 0.70
   3 ?   -4.6   0.9         9   1.4e+04      33      42 ..     844     853 ..     840     857 .. 0.45

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.1e-05
   PF03988.7  24 s...lglGyavssavflallavlvaaqyr 49 
                 +   lg+G+ v+savf +l+++++ a++ 
  MMETSP0890-20130614|3338_1 150 TgsaLGIGTIVGSAVFNVLFVIAMCALFT 178
                 2235******************9999875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.1
   PF03988.7  13 lGttlGDlltk 23 
                  Gt++ Dll+ 
  MMETSP0890-20130614|3338_1 779 AGTSVPDLLSS 789
                 69999999987 PP

  == domain 3    score: -4.6 bits;  conditional E-value: 9
   PF03988.7  33 savflallav 42 
                  +++++ll++
  MMETSP0890-20130614|3338_1 844 ILLLMVLLVI 853
                 3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:01.33
# Mc/sec: 1551.33
//
Query:       MMETSP0890-20130614|3348_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-27   95.0   0.1    5.1e-27   94.8   0.1    1.0  1  PF06644.6 ATP11 protein


Domain annotation for each model (and alignments):
>> PF06644.6  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.1   3.7e-31   5.1e-27      85     259 ..       2     164 ..       1     167 [. 0.92

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 3.7e-31
                 HS-HHHHTTS-HHHHHHHHHHHTTT-SS---EEEEIIII---HHHHHH--EEEEEEE-----EEEEEEEEEE----EEEEEEEETTTTTT-HHHHS-SEEEEEE-TTHHHH-EEEEE-EE-TTSS--HHHHHHHHHHHHHH-------SHHHHHHHHHHHHHH---TT--HHHHH CS
   PF06644.6  85 ildlekvkqlsveeieeiWrayhtnkkkslcAvipaetYkkmlalAkqnPqFvlPlpreeqgaemhflqwafaapktstvlfTqLaeyklrgefAqphltlthytdladdkgvVLmrGeveeksgvsaqeAqlLvlqlQrFYgesaqeeeeakerleLledFtkkpeefkveeli 259
                 i++l++++ +s + i eiW++y++n+ + +   + +e  k ++ +A+  P+F++P+ r+  g  + + q++     + +++ T L++yk++   A+p+lt+t + dl ++kg+VL+r+++++   +++ eA   v ql   Y        ++ + ++ +  F++ p++f++e+ i
  MMETSP0890-20130614|3348_1   2 IVKLPLLQRESSARIAEIWKEYYKNRLDAIGRDMQSEHAKLLIDRARPAPTFIFPIFRQ-GGHFILLSQFQ----DQRHFVCTYLEDYKKNPVLAKPYLTITLHDDLVKEKGIVLLRADIDKM--LTKREAEHTVTQLIETY-----LVASRYSSQNGVLSFNQSPQSFNHETYI 164
                 89*********************************************************.99999999***....9********************************************865..6***********99988.....45555566666778********999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.63
# Mc/sec: 654.24
//
Query:       MMETSP0890-20130614|3349_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-16   58.4   0.0    5.5e-16   58.3   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    5.1e-05   22.8   0.0    0.00015   21.3   0.0    1.7  1  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
        1.5    8.8   5.3         17    5.4   1.3    2.9  2  PF05345.7 Putative Ig domain


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   1.2e-19   5.5e-16      16      72 ..       2      58 ..       1      59 [] 0.93

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1.2e-19
   PF13306.1 16 sitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsi 72
                ++++p+ +t+Ig++aF++c+sl+++tlp  lt +ge aF++c+slt++t+p  lt+i
  MMETSP0890-20130614|3349_1  2 QLKLPTGLTTIGDNAFEECTSLTQVTLPVGLTLVGECAFEGCTSLTQVTLPVGLTTI 58
                6799999*******************************************9999998 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.3e-08   0.00015      13      56 ..       9      51 ..       2      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.3e-08
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+d+aF+ +++L+   L    l+ + ++af+g++sL+++ L
  MMETSP0890-20130614|3349_1  9 LTTIGDNAFEECTSLTQVTLP-VGLTLVGECAFEGCTSLTQVTL 51
                9********************.9*****************9987 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.3    0.0038        17       8      18 ..      24      34 ..       2      48 .. 0.78
   2 ?    2.3   0.1     0.034   1.5e+02       8      17 ..      47      56 ..      39      56 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0038
   PF05345.7  8 gsngLPsGLtL 18
                ++ +LP GLtL
  MMETSP0890-20130614|3349_1 24 TQVTLPVGLTL 34
                67899999999 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.034
   PF05345.7  8 gsngLPsGLt 17
                ++ +LP GLt
  MMETSP0890-20130614|3349_1 47 TQVTLPVGLT 56
                6789*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      122  (0.00892335); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 231.78
//
Query:       MMETSP0890-20130614|3360_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.073   12.8   0.9      0.073   12.8   0.6    3.2  4  PF12557.3  Cob(I)alamin adenosyltransferase N terminal
       0.11   12.0   4.2       0.16   11.5   2.9    1.2  1  PF02996.12 Prefoldin subunit
        1.9    7.7   9.3        2.1    7.5   6.4    1.0  1  PF09756.4  DDRGK domain
        1.9    7.9   4.2        2.1    7.8   2.9    1.0  1  PF04194.8  Programmed cell death protein 2, C-terminal putative domain
        2.8    8.6   7.6        3.5    8.3   5.3    1.3  1  PF04883.7  Bacteriophage protein of unknown function (DUF646)
        3.7    7.8   9.5        3.9    7.7   6.6    1.0  1  PF11716.3  Mycothiol maleylpyruvate isomerase N-terminal domain
        5.8    7.4   9.3          6    7.3   6.5    1.1  1  PF09538.5  Protein of unknown function (FYDLN_acid)
        7.2    5.9   8.1          8    5.7   5.6    1.1  1  PF05529.7  B-cell receptor-associated protein 31-like
        8.6    6.0   8.6        8.8    6.0   6.0    1.0  1  PF06459.7  Ryanodine Receptor TM 4-6
        9.3    6.5  14.6         10    6.4  10.1    1.1  1  PF11839.3  Protein of unknown function (DUF3359)


Domain annotation for each model (and alignments):
>> PF12557.3  Cob(I)alamin adenosyltransferase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   5.4e-05     0.073      11      23 ..       4      16 ..       3      16 .. 0.92
   2 ?    2.5   0.2      0.09   1.2e+02      11      18 ..      18      25 ..      17      30 .. 0.86
   3 ?   -2.6   0.1       3.6   4.9e+03       4       5 ..      40      41 ..      36      44 .. 0.49
   4 ?   -2.4   0.1       3.2   4.4e+03      14      17 ..      55      58 ..      55      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.4e-05
   PF12557.3 11 aRMqrkKevvDar 23
                +R +r+K+++Da+
  MMETSP0890-20130614|3360_1  4 ERAARVKAAQDAE 16
                89*********96 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.09
   PF12557.3 11 aRMqrkKe 18
                +R +r+K+
  MMETSP0890-20130614|3360_1 18 ERAARVKA 25
                899****8 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 3.6
   PF12557.3  4 dd 5 
                ++
  MMETSP0890-20130614|3360_1 40 EK 41
                33 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 3.2
   PF12557.3 14 qrkK 17
                q++K
  MMETSP0890-20130614|3360_1 55 QKLK 58
                9999 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.9   0.00012      0.16      69     111 ..      23      65 ..      20      66 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
                 -EEEEEHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HH CS
  PF02996.12  69 yyveksleeAiellkkkleelekqlekleeeleklkdqittle 111
                 + +ek++eeA +  +k  +++ k+l    +e++klkd+i+ le
  MMETSP0890-20130614|3360_1  23 VKAEKDAEEALAAKEKAEKDAAKALADKDAEVQKLKDRINVLE 65 
                 669************************************9876 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.4    0.0016       2.1      27      85 ..       4      64 ..       1      67 [. 0.67

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
                XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF09756.4 27 ereerkkkeekrekerkee..eekeeekekkkeeeerkeeeekerkeqeeyeklksefvve 85
                er  r k  +  e+er  +   ek  e++ + +e+++k  +++ ++++ e++klk  ++v 
  MMETSP0890-20130614|3360_1  4 ERAARVKAAQDAESERAARvkAEKDAEEALAAKEKAEKDAAKALADKDAEVQKLKDRINVL 64
                444444444444444444322666777777788888888999999999********99985 PP

>> PF04194.8  Programmed cell death protein 2, C-terminal putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.9    0.0015       2.1      12      68 ..       3      62 ..       1      65 [. 0.60

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0015
   PF04194.8 12 eetleeeslpeepeeeeidaleeeekesk..ggkeeeetdel.kakeeDktFqkFkkrva 68
                +e++ + +  ++ e+e+ + +++e++ ++  + ke++e+d   +  ++D++ qk k+r++
  MMETSP0890-20130614|3360_1  3 SERAARVKAAQDAESERAARVKAEKDAEEalAAKEKAEKDAAkALADKDAEVQKLKDRIN 62
                555555555555555555444444444332255566666666578999*********996 PP

>> PF04883.7  Bacteriophage protein of unknown function (DUF646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.3    0.0026       3.5      12      56 ..      23      64 ..       4      68 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0026
   PF04883.7 12 kkavekalarkalkkaaevvaeeakalapvddrktghLrdsIkvk 56
                 ka+++  a++al++  +  +++akala +d  +  +L+d I v 
  MMETSP0890-20130614|3360_1 23 VKAEKD--AEEALAAKEKAEKDAAKALADKD-AEVQKLKDRINVL 64
                366777..7**********************.8888*****9985 PP

>> PF11716.3  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.6    0.0028       3.9      41      99 ..       3      60 ..       1      67 [. 0.62

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0028
                HHHHHHHHHHH..HH------.SSS.-HHHHHHHH----S-HHHHHHHHHHHHHHHHHH CS
   PF11716.3 41 saralaaalageaaesglardaaaplvtaaaeavdlaaslapeallaafraavtrlaaa 99
                s+ra+    a+++aes++a+++ a+ ++++a a++++a+ +++  la+ +a+v++l ++
  MMETSP0890-20130614|3360_1  3 SERAARVK-AAQDAESERAARVKAEKDAEEALAAKEKAEKDAAKALADKDAEVQKLKDR 60
                44555555.44456666666666666666677777777777777777777777777665 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.5    0.0044         6      36      99 ..      13      59 ..       1      68 [] 0.28

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0044
   PF09538.5 36 vepekeakkkavaadeeeeaaeekeeeeeeeeddvledddeeedldddledeadddvdldeddD 99
                ++ e + ++++v+a++++e+             +++e++    + +d  +  ad d+++++  D
  MMETSP0890-20130614|3360_1 13 QDAE-SERAARVKAEKDAEE-----------ALAAKEKA----E-KDAAKALADKDAEVQKLKD 59
                1111.111111111111111...........11111111....1.2333333333444444333 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.6    0.0059         8     133     186 ..      12      64 ..       2      67 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0059
   PF05529.7 133 lealkkqaesatkaakklkeekekklkeeveklkkeleekekdlealkkqaegl 186
                 +++++++ ++ +ka+k+++e+  +k+k+e ++  k l++k+ +++ lk +++ l
  MMETSP0890-20130614|3360_1  12 AQDAESERAARVKAEKDAEEALAAKEKAEKDA-AKALADKDAEVQKLKDRINVL 64 
                 33333444444444444444444444444444.456777888888888887765 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.0    0.0064       8.8     100     155 ..       8      61 ..       1      66 [. 0.63

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0064
   PF06459.7 100 eaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaeaeifkel 155
                   + a+ +++e+   a+ + e+++eea aak+kaek ++k+   ++a++ ++   +
  MMETSP0890-20130614|3360_1   8 RVKAAQDAESER--AARVKAEKDAEEALAAKEKAEKDAAKALADKDAEVQKLKDRI 61 
                 333333333333..466666668899999999999999998888777777766555 PP

>> PF11839.3  Protein of unknown function (DUF3359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  10.1    0.0074        10      41      82 ..       6      46 ..       1      58 [. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0074
   PF11839.3 41 eaavsaaedaadralaradeayakaeealaaalkaqkaadea 82
                 a+v aa+da     ar   a + aeealaa  ka k a  a
  MMETSP0890-20130614|3360_1  6 AARVKAAQDAESERAARV-KAEKDAEEALAAKEKAEKDAAKA 46
                57999****999988887.5899*************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1524  (0.111469); expected 273.4 (0.02)
Passed bias filter:                      928  (0.067876); expected 273.4 (0.02)
Passed Vit filter:                       138  (0.0100936); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.48s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 226.32
//
Query:       MMETSP0890-20130614|3359_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33   10.5   3.4       0.21   11.2   0.5    1.8  2  PF11712.3 Endoplasmic reticulum-based factor for assembly of V-ATPase


Domain annotation for each model (and alignments):
>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.14   1.9e+03      82      98 ..      28      44 ..      25      61 .. 0.76
   2 ?   11.2   0.5   1.5e-05      0.21      30      78 ..      69     118 ..      64     131 .. 0.62

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.14
   PF11712.3 82 lvlNilvsvvgtffavy 98
                +v++++v v+g +++  
  MMETSP0890-20130614|3359_1 28 AVFQVMVIVIGLLAGSI 44
                58889999988877665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1.5e-05
   PF11712.3  30 rLraaqeedeYkrlirdvdksqknskp.....spaakkdeeddefgvelkevkr 78 
                 +Lr ++e+d Yk l ++++++ +  k+     ++     e++++    +ke+ +
  MMETSP0890-20130614|3359_1  69 NLRLKAEKDDYKNLFKQMAEQLEEWKStgehdQN----PEKQKTHMHSFKEMSE 118
                 79*************9998765543334432222....2222333334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       915  (0.0669251); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:01.00
# Mc/sec: 515.22
//
Query:       MMETSP0890-20130614|3364_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-74  244.7  40.3    4.2e-12   46.1   0.7    7.0  7  PF08238.7  Sel1 repeat
    2.6e-10   40.5  21.2      0.018   15.5   1.9    5.3  6  PF13432.1  Tetratricopeptide repeat
    4.7e-08   32.8  12.6        7.8    7.0   0.0    6.6  6  PF13174.1  Tetratricopeptide repeat
    5.7e-08   32.4  20.2       0.79    9.5   0.1    6.9  7  PF04212.13 MIT (microtubule interacting and transport) domain
    6.6e-07   29.2   7.5        5.1    7.9   0.0    6.0  6  PF13428.1  Tetratricopeptide repeat
    1.1e-05   24.8  27.5      0.023   14.2   1.0    5.0  6  PF13414.1  TPR repeat
      0.002   17.6   7.4        3.5    7.1   0.0    4.9  6  PF09127.6  Leukotriene A4 hydrolase, C-terminal
  ------ inclusion threshold ------
      0.015   14.9  17.1        1.6    8.5   0.0    6.1  7  PF13176.1  Tetratricopeptide repeat
      0.016   14.7   2.1        2.3    7.6   0.1    3.4  4  PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
      0.018   14.7   3.8        5.6    6.7   0.0    5.1  6  PF00382.14 Transcription factor TFIIB repeat
      0.054   13.0  34.6        4.4    6.9   0.0   10.6 12  PF00515.23 Tetratricopeptide repeat
      0.055   13.3  22.8        1.3    8.9   1.4    5.6  5  PF13424.1  Tetratricopeptide repeat
       0.49   10.3   6.4         28    4.7   0.0    4.2  5  PF13264.1  Domain of unknown function (DUF4055)
       0.92    9.1  11.0       0.94    9.1   1.4    2.3  2  PF13557.1  Putative MetA-pathway of phenol degradation
        8.5    5.4  12.3        2.6    7.1   1.9    2.4  3  PF03867.9  Fushi tarazu (FTZ), N-terminal region


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-05     0.013      27      39 .]       2      14 ..       1      14 [. 0.94
   2 !   45.7   0.8   6.5e-15   5.9e-12       1      39 []      15      50 ..      15      50 .. 0.96
   3 !   42.8   0.6   5.2e-14   4.8e-11       1      39 []      51      86 ..      51      86 .. 0.96
   4 !   46.1   0.7   4.6e-15   4.2e-12       1      39 []      87     122 ..      87     122 .. 0.96
   5 !   44.9   1.0   1.1e-14     1e-11       1      39 []     123     158 ..     123     158 .. 0.96
   6 !   43.6   0.6   2.9e-14   2.6e-11       1      39 []     159     194 ..     159     194 .. 0.94
   7 !   31.7   0.1   1.6e-10   1.5e-07       1      33 [.     195     224 .]     195     224 .] 0.94

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.5e-05
   PF08238.7 27 AleWyekAAeqGh 39
                A+eWy++AA+qG+
  MMETSP0890-20130614|3364_1  2 AVEWYRRAADQGS 14
                99*********95 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 6.5e-15
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                a Aq  LG  ++y++G+ Gv++++++A+eWy+++A+qGh
  MMETSP0890-20130614|3364_1 15 ANAQHSLG--ECYYDGQ-GVEQNYNLAVEWYRRSADQGH 50
                67******..9999***.9*******************9 PP

  == domain 3    score: 42.8 bits;  conditional E-value: 5.2e-14
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                a Aqy LG  y y  G  Gv++++e A+eWy++AA+qG+
  MMETSP0890-20130614|3364_1 51 ANAQYSLG--YSYSIGK-GVEQNYEIAVEWYRRAADQGS 86
                68******..******9.9******************95 PP

  == domain 4    score: 46.1 bits;  conditional E-value: 4.6e-15
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 a Aq  LG  ++y++G+ Gv++++++A+eWy++AA+qG+
  MMETSP0890-20130614|3364_1  87 ANAQHSLG--ECYHDGQ-GVEQNYNLAVEWYRRAADQGD 122
                 67******..999****.9*******************7 PP

  == domain 5    score: 44.9 bits;  conditional E-value: 1.1e-14
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 a+Aqy LG   +y++Gl Gv++++e A+eWy+ AA+q++
  MMETSP0890-20130614|3364_1 123 ADAQYSLG--FCYHYGL-GVEQNYEIAVEWYRHAADQDN 158
                 79******..999***9.9******************87 PP

  == domain 6    score: 43.6 bits;  conditional E-value: 2.9e-14
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 a++q+ LG   +y nG  Gv++++++A+eWy++AA+qG+
  MMETSP0890-20130614|3364_1 159 AKGQCGLG--NCYSNGH-GVEQNYDLAVEWYRRAADQGN 194
                 57899***..8999**8.9*******************8 PP

  == domain 7    score: 31.7 bits;  conditional E-value: 1.6e-10
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyek 33 
                 a Aq++LG  ++y nG+ Gv++ +e A+eWy++
  MMETSP0890-20130614|3364_1 195 AIAQFKLG--LCYSNGQ-GVEQSYEVAVEWYRR 224
                 57******..999****.9************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.8   0.00011       0.1      21      62 ..       7      50 ..       2      53 .. 0.79
   2 !   10.5   0.5   0.00073      0.66      29      64 ..      49      88 ..      46      89 .. 0.88
   3 !   15.5   1.9     2e-05     0.018      11      63 ..      69     123 ..      68     124 .. 0.89
   4 !   15.4   1.9   2.2e-05      0.02      12      61 ..     106     157 ..     105     160 .. 0.89
   5 ?    5.1   0.1     0.038        35      45      59 ..     177     191 ..     164     193 .. 0.73
   6 !    9.9   0.4    0.0011         1      11      56 ..     177     224 .]     173     224 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00011
   PF13432.1 21 eaalalaPeaaeallllaeallrl....grldeAaallraalalaP 62
                ++a +   + a+a+  l+e++++      ++  A++++r+ ++ + 
  MMETSP0890-20130614|3364_1  7 RRAAD--QGSANAQHSLGECYYDGqgveQNYNLAVEWYRRSADQGH 50
                44444..55*************666***************987654 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00073
   PF13432.1 29 eaaeallllaeallrl....grldeAaallraalalaPdd 64
                ++a+a++ l+ ++        +++ A++++r+a++ ++ +
  MMETSP0890-20130614|3364_1 49 GHANAQYSLGYSYSIGkgveQNYEIAVEWYRRAADQGSAN 88
                69************666****************9887765 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 2e-05
   PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallrl....grldeAaallraalalaPd 63 
                 ++y+ A++ +++a ++    a+a+  l+e++++      ++  A++++r+a++ ++ 
  MMETSP0890-20130614|3364_1  69 QNYEIAVEWYRRAADQG--SANAQHSLGECYHDGqgveQNYNLAVEWYRRAADQGDA 123
                 68999999999999999..*************666****************987765 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 2.2e-05
   PF13432.1  12 dydeAlaaleaalalaPeaaeallllaeall.rl...grldeAaallraalala 61 
                 +y  A++ +++a ++   +a+a++ l+ +++  l    +++ A++++r+a++ +
  MMETSP0890-20130614|3364_1 106 NYNLAVEWYRRAADQG--DADAQYSLGFCYHyGLgveQNYEIAVEWYRHAADQD 157
                 7888888888999999..*************999***************98665 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.038
   PF13432.1  45 grldeAaallraala 59 
                  ++d A++++r+a++
  MMETSP0890-20130614|3364_1 177 QNYDLAVEWYRRAAD 191
                 79**********986 PP

  == domain 6    score: 9.9 bits;  conditional E-value: 0.0011
   PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeall.rl...grldeAaallra 56 
                 ++yd A++ +++a ++   +a a++ l+ ++   +     ++ A++++r+
  MMETSP0890-20130614|3364_1 177 QNYDLAVEWYRRAADQG--NAIAQFKLGLCYSnGQgveQSYEVAVEWYRR 224
                 69999999999999999..************9555886666666688875 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.014        12       2      25 ..      17      44 ..      16      48 .. 0.85
   2 ?    5.4   0.1     0.029        27       2      28 ..      53      83 ..      52      84 .. 0.86
   3 ?    5.7   0.0     0.022        20       2      28 ..      89     119 ..      88     120 .. 0.84
   4 ?    6.8   0.1      0.01       9.2       1      24 [.     124     151 ..     124     157 .. 0.88
   5 ?    5.0   0.0     0.039        36       6      28 ..     165     191 ..     164     192 .. 0.84
   6 !    7.0   0.0    0.0085       7.8       2      24 ..     197     223 ..     196     224 .] 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.014
                HHHHHHHHHHHH....HHHHHHHHHHHH CS
   PF13174.1  2 Alyklalsyykl....gdtdeAlealer 25
                A+  l+++yy +    +++  A+e ++r
  MMETSP0890-20130614|3364_1 17 AQHSLGECYYDGqgveQNYNLAVEWYRR 44
                56679******559999999**999997 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.029
                HHHHHHHHHHHH....HHHHHHHHHHHHHHH CS
   PF13174.1  2 Alyklalsyykl....gdtdeAlealerlik 28
                A+y l++sy  +    ++++ A+e ++r  +
  MMETSP0890-20130614|3364_1 53 AQYSLGYSYSIGkgveQNYEIAVEWYRRAAD 83
                88999999997678999**********9876 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHH....HHHHHHHHHHHHHHH CS
   PF13174.1   2 Alyklalsyykl....gdtdeAlealerlik 28 
                 A+  l+++y  +    +++  A+e ++r  +
  MMETSP0890-20130614|3364_1  89 AQHSLGECYHDGqgveQNYNLAVEWYRRAAD 119
                 56679*****9559999**********9876 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHH....HHHHHHHHHHH CS
   PF13174.1   1 dAlyklalsyykl....gdtdeAleale 24 
                 dA+y l+ +y  +    ++++ A+e ++
  MMETSP0890-20130614|3364_1 124 DAQYSLGFCYHYGlgveQNYEIAVEWYR 151
                 89*********9779*99*******998 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.039
                 HHHHHHHH....HHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyykl....gdtdeAlealerlik 28 
                 l+ +y ++    +++d A+e ++r  +
  MMETSP0890-20130614|3364_1 165 LGNCYSNGhgveQNYDLAVEWYRRAAD 191
                 6888888788888**********9876 PP

  == domain 6    score: 7.0 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHH.H...HHHHHHHHHHH CS
   PF13174.1   2 Alyklalsyyk.l...gdtdeAleale 24 
                 A++kl+l+y + +   + ++ A+e ++
  MMETSP0890-20130614|3364_1 197 AQFKLGLCYSNgQgveQSYEVAVEWYR 223
                 89*********4455555556666665 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.78   7.1e+02      24      33 ..       2      11 ..       1      12 [. 0.88
   2 ?    5.3   0.2     0.018        16      18      33 ..      32      47 ..      25      48 .. 0.85
   3 !    8.8   0.1    0.0014       1.3      17      33 ..      67      83 ..      63      84 .. 0.86
   4 !    7.1   0.1    0.0047       4.3      18      33 ..     104     119 ..      98     120 .. 0.87
   5 !    9.5   0.1   0.00087      0.79      18      33 ..     140     155 ..     137     156 .. 0.89
   6 !    7.8   0.1    0.0029       2.7      18      33 ..     176     191 ..     171     198 .. 0.89
   7 ?    2.9   0.0     0.099        90      18      29 ..     212     223 ..     193     224 .] 0.84

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.78
                HHHHHHHHHH CS
  PF04212.13 24 AlelYkeAle 33
                A+e+Y+ A++
  MMETSP0890-20130614|3364_1  2 AVEWYRRAAD 11
                99*****986 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.018
                TT-HHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAle 33
                +++y+ A+e+Y+ +++
  MMETSP0890-20130614|3364_1 32 EQNYNLAVEWYRRSAD 47
                78**********9876 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0014
                HTT-HHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAle 33
                 +++ye A+e+Y+ A++
  MMETSP0890-20130614|3364_1 67 VEQNYEIAVEWYRRAAD 83
                589***********987 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0047
                 TT-HHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAle 33 
                 +++y+ A+e+Y+ A++
  MMETSP0890-20130614|3364_1 104 EQNYNLAVEWYRRAAD 119
                 78***********987 PP

  == domain 5    score: 9.5 bits;  conditional E-value: 0.00087
                 TT-HHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAle 33 
                 +++ye A+e+Y++A++
  MMETSP0890-20130614|3364_1 140 EQNYEIAVEWYRHAAD 155
                 79************87 PP

  == domain 6    score: 7.8 bits;  conditional E-value: 0.0029
                 TT-HHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAle 33 
                 +++y+ A+e+Y+ A++
  MMETSP0890-20130614|3364_1 176 EQNYDLAVEWYRRAAD 191
                 78************87 PP

  == domain 7    score: 2.9 bits;  conditional E-value: 0.099
                 TT-HHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYk 29 
                 ++ ye A+e+Y+
  MMETSP0890-20130614|3364_1 212 EQSYEVAVEWYR 223
                 789********8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.25   2.3e+02      20      42 ..       2      22 ..       2      24 .. 0.73
   2 ?    2.6   0.1      0.27   2.5e+02      15      39 ..      33      55 ..      15      61 .. 0.63
   3 ?    6.5   0.1     0.015        13      15      42 ..      69      94 ..      51      96 .. 0.71
   4 !    7.7   0.0    0.0065       5.9      16      43 ..     106     131 ..      99     132 .. 0.83
   5 ?    1.5   0.0       0.6   5.5e+02      16      41 ..     142     165 ..     137     168 .. 0.72
   6 !    7.9   0.0    0.0056       5.1      15      41 ..     177     201 ..     169     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.25
   PF13428.1 20 AiallrralalaPddaealllLa 42
                A++++rra  ++ ++a a++ L+
  MMETSP0890-20130614|3364_1  2 AVEWYRRA--ADQGSANAQHSLG 22
                899*****..5566677777666 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.27
   PF13428.1 15 GdpdeAiallrralalaPddaeall 39
                +++  A++++rr +    ++a a++
  MMETSP0890-20130614|3364_1 33 QNYNLAVEWYRRSAD--QGHANAQY 55
                57889******9844..44555555 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.015
   PF13428.1 15 GdpdeAiallrralalaPddaealllLa 42
                ++++ A++++rra  ++ ++a a++ L+
  MMETSP0890-20130614|3364_1 69 QNYEIAVEWYRRA--ADQGSANAQHSLG 94
                68999********..5566677777666 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.0065
   PF13428.1  16 dpdeAiallrralalaPddaealllLar 43 
                 ++  A++++rra  ++ +da+a++ L++
  MMETSP0890-20130614|3364_1 106 NYNLAVEWYRRA--ADQGDADAQYSLGF 131
                 7888********..67788999988876 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.6
   PF13428.1  16 dpdeAiallrralalaPddaealllL 41 
                 +++ A++++r a  ++ d+a  +  L
  MMETSP0890-20130614|3364_1 142 NYEIAVEWYRHA--ADQDNAKGQCGL 165
                 778899999988..556666666555 PP

  == domain 6    score: 7.9 bits;  conditional E-value: 0.0056
   PF13428.1  15 GdpdeAiallrralalaPddaealllL 41 
                 +++d A++++rra  ++ ++a a++ L
  MMETSP0890-20130614|3364_1 177 QNYDLAVEWYRRA--ADQGNAIAQFKL 201
                 689**********..555566666555 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.4    0.0062       5.6      36      63 ..      14      44 ..       2      47 .. 0.53
   2 !    7.5   3.5     0.003       2.7       3      64 ..      15      81 ..      13      84 .. 0.81
   3 ?    5.6   3.5     0.012        11      16      64 ..      68     117 ..      51     119 .. 0.82
   4 !   10.8   3.7   0.00029      0.27       3      65 ..      87     154 ..      86     158 .. 0.83
   5 !   11.9   3.2   0.00012      0.11       3      64 ..     123     189 ..     122     190 .. 0.90
   6 !   14.2   1.0   2.5e-05     0.023       7      55 ..     163     212 ..     157     224 .] 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0062
   PF13414.1 36 naelyynlAlaylklg....kdyeeAledyek 63
                +a++   l+ +y+  g    ++y  A+e y++
  MMETSP0890-20130614|3364_1 14 SANAQHSLGECYYD-GqgveQNYNLAVEWYRR 44
                46666666666665.42333455555555544 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.003
   PF13414.1  3 AealkelGnalfk....egdydeAieayekAleldpnnaelyynlAlayl.klg..kdyeeAledyekA 64
                A a   lG++++     e++y  A+e y+++ +    +a++ y l+++y   +g  ++ye A+e y++A
  MMETSP0890-20130614|3364_1 15 ANAQHSLGECYYDgqgvEQNYNLAVEWYRRSADQG--HANAQYSLGYSYSiGKGveQNYEIAVEWYRRA 81
                788999******9888888***********98766..79999999999873334556888888888877 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.012
   PF13414.1  16 egdydeAieayekAleldpnnaelyynlAlaylklg....kdyeeAledyekA 64 
                 e++y+ A+e y++A +    +a++   l+ +y   g    ++y  A+e y++A
  MMETSP0890-20130614|3364_1  68 EQNYEIAVEWYRRAADQG--SANAQHSLGECYHD-GqgveQNYNLAVEWYRRA 117
                 679999*******99887..699********998.645666999999999988 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00029
   PF13414.1   3 AealkelGnalfk....egdydeAieayekAleldpnnaelyynlAlaylklg....kdyeeAledyekAl 65 
                 A a   lG+++      e++y  A+e y++A +    +a++ y l+ +y   g    ++ye A+e y++A 
  MMETSP0890-20130614|3364_1  87 ANAQHSLGECYHDgqgvEQNYNLAVEWYRRAADQG--DADAQYSLGFCYHY-GlgveQNYEIAVEWYRHAA 154
                 6778888999998777788************9877..7**********775.4448889999999999885 PP

  == domain 5    score: 11.9 bits;  conditional E-value: 0.00012
   PF13414.1   3 AealkelGnalfk....egdydeAieayekAleldpnnaelyynlAlaylklg....kdyeeAledyekA 64 
                 A+a + lG ++ +    e++y+ A+e y++A + d  na+  ++l+ +y + g    ++y+ A+e y++A
  MMETSP0890-20130614|3364_1 123 ADAQYSLGFCYHYglgvEQNYEIAVEWYRHAADQD--NAKGQCGLGNCYSN-GhgveQNYDLAVEWYRRA 189
                 7888999999998888899************9888..8************9.7688889******99988 PP

  == domain 6    score: 14.2 bits;  conditional E-value: 2.5e-05
   PF13414.1   7 kelGnalfk....egdydeAieayekAleldpnnaelyynlAlaylklgkdye 55 
                   lGn++ +    e++yd A+e y++A +    na++ + l+l+y + g+  e
  MMETSP0890-20130614|3364_1 163 CGLGNCYSNghgvEQNYDLAVEWYRRAADQG--NAIAQFKLGLCYSN-GQGVE 212
                 568999999888899************9876..8***********99.86444 PP

>> PF09127.6  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.13   1.2e+02      54      80 ..      18      46 ..       8      55 .. 0.73
   2 !    6.9   0.0    0.0044         4      56      90 ..      56      92 ..      46      99 .. 0.74
   3 ?    2.9   0.0     0.071        65      54      83 ..      90     121 ..      82     129 .. 0.77
   4 !    7.1   0.0    0.0038       3.5      58      80 ..     130     154 ..     118     163 .. 0.79
   5 ?    0.4   0.0      0.42   3.8e+02      65      80 ..     175     190 ..     156     201 .. 0.69
   6 ?   -2.3   0.0         3   2.7e+03      67      77 ..     213     223 ..     196     224 .] 0.74

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.13
                .HHHHHHT..IIIT---HHHHHHHHHHHH CS
   PF09127.6 54 vkaLdeiY..klskskNaEikfrwlrlai 80
                 ++L+e+Y       +N+ ++++w+r + 
  MMETSP0890-20130614|3364_1 18 QHSLGECYydGQGVEQNYNLAVEWYRRSA 46
                46788888866677789999999998765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0044
                HHHHHTIIIT-..--HHHHHHHHHHHHHTT-GGGHHH CS
   PF09127.6 56 aLdeiYklsks..kNaEikfrwlrlairakyeevlpe 90
                +L+  Y++ k   +N+Ei+++w+r a   +  ++ ++
  MMETSP0890-20130614|3364_1 56 SLGYSYSIGKGveQNYEIAVEWYRRAADQGSANAQHS 92
                56677777664339**********9988777766665 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.071
                 .HHHHHHT..IIIT---HHHHHHHHHHHHHTT CS
   PF09127.6  54 vkaLdeiY..klskskNaEikfrwlrlairak 83 
                  ++L+e+Y       +N+ ++++w+r a   +
  MMETSP0890-20130614|3364_1  90 QHSLGECYhdGQGVEQNYNLAVEWYRRAADQG 121
                 4689999986667789*********9887655 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0038
                 HHHT..IIIT---HHHHHHHHHHHH CS
   PF09127.6  58 deiY..klskskNaEikfrwlrlai 80 
                 + +Y   l   +N+Ei+++w+r a 
  MMETSP0890-20130614|3364_1 130 GFCYhyGLGVEQNYEIAVEWYRHAA 154
                 55555599999**********9875 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.42
                 T---HHHHHHHHHHHH CS
   PF09127.6  65 kskNaEikfrwlrlai 80 
                   +N+ ++++w+r a 
  MMETSP0890-20130614|3364_1 175 VEQNYDLAVEWYRRAA 190
                 4577888888887654 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 3
                 --HHHHHHHHH CS
   PF09127.6  67 kNaEikfrwlr 77 
                 + +E++++w+r
  MMETSP0890-20130614|3364_1 213 QSYEVAVEWYR 223
                 56799999997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   2.1e+03      18      28 ..       2      10 ..       2      32 .. 0.70
   2 ?    1.9   0.1      0.24   2.2e+02       6      26 ..      22      46 ..      17      57 .. 0.74
   3 ?    3.8   0.1      0.06        55      13      28 ..      69      82 ..      65      91 .. 0.85
   4 ?    5.0   0.2     0.024        22       4      33 ..      92     123 ..      89     126 .. 0.80
   5 ?    3.3   0.0     0.087        80      13      31 ..     141     157 ..     129     160 .. 0.87
   6 ?    8.5   0.0    0.0018       1.6       4      29 ..     164     191 ..     163     198 .. 0.86
   7 ?   -1.5   0.0       2.8   2.6e+03      14      24 ..     214     224 .]     199     224 .] 0.71

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.3
   PF13176.1 18 AielyeraLal 28
                A+e y+r  a 
  MMETSP0890-20130614|3364_1  2 AVEWYRR--AA 10
                6777777..43 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.24
   PF13176.1  6 arlysr....lgdyekAielyeraL 26
                +++y +     ++y  A+e y+r+ 
  MMETSP0890-20130614|3364_1 22 GECYYDgqgvEQNYNLAVEWYRRSA 46
                5555555555789999*****9954 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.06
   PF13176.1 13 gdyekAielyeraLal 28
                ++ye A+e y+r  a 
  MMETSP0890-20130614|3364_1 69 QNYEIAVEWYRR--AA 82
                79**********..55 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.024
   PF13176.1   4 nLarlysr....lgdyekAielyeraLaltkdpl 33 
                  L+++y +     ++y  A+e y+r  a ++ + 
  MMETSP0890-20130614|3364_1  92 SLGECYHDgqgvEQNYNLAVEWYRR--AADQGDA 123
                 68888888888899***********..7666554 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.087
   PF13176.1  13 gdyekAielyeraLaltkd 31 
                 ++ye A+e y+   a ++d
  MMETSP0890-20130614|3364_1 141 QNYEIAVEWYRH--AADQD 157
                 89*********9..87776 PP

  == domain 6    score: 8.5 bits;  conditional E-value: 0.0018
   PF13176.1   4 nLarlysr....lgdyekAielyeraLalt 29 
                  L+++ys+     ++y+ A+e y+r  a +
  MMETSP0890-20130614|3364_1 164 GLGNCYSNghgvEQNYDLAVEWYRR--AAD 191
                 699999999999*************..655 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 2.8
   PF13176.1  14 dyekAielyer 24 
                  ye A+e y+r
  MMETSP0890-20130614|3364_1 214 SYEVAVEWYRR 224
                 57889999987 PP

>> PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.034        31      76     117 ..      15      56 ..       3      66 .. 0.88
   2 ?    0.9   0.0      0.29   2.6e+02      76     113 ..      51      88 ..      49      92 .. 0.80
   3 ?    7.6   0.1    0.0025       2.3      76     116 ..      87     127 ..      70     163 .. 0.77
   4 ?   -0.3   0.0      0.68   6.2e+02      92     111 ..     175     194 ..     165     207 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.034
                 --HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH CS
   PF06552.7  76 gnaytsfafltpdeeeakenfdkatqffqqavdedPdndlyr 117
                 +na  s +    d +  ++n+++a ++++++ d+   n  y 
  MMETSP0890-20130614|3364_1  15 ANAQHSLGECYYDGQGVEQNYNLAVEWYRRSADQGHANAQYS 56 
                 799999999999*********************999998875 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.29
                 --HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF06552.7  76 gnaytsfafltpdeeeakenfdkatqffqqavdedPdn 113
                 +na  s ++  +  +  ++n++ a +++++a d+   n
  MMETSP0890-20130614|3364_1  51 ANAQYSLGYSYSIGKGVEQNYEIAVEWYRRAADQGSAN 88 
                 5777777777777788899************9997766 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0025
                 --HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH CS
   PF06552.7  76 gnaytsfafltpdeeeakenfdkatqffqqavdedPdndly 116
                 +na  s +   +d +  ++n+++a +++++a d+   +  y
  MMETSP0890-20130614|3364_1  87 ANAQHSLGECYHDGQGVEQNYNLAVEWYRRAADQGDADAQY 127
                 899999*************************9986554443 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHHHHHHHH-T CS
   PF06552.7  92 akenfdkatqffqqavdedP 111
                  ++n+d+a +++++a d+  
  MMETSP0890-20130614|3364_1 175 VEQNYDLAVEWYRRAADQGN 194
                 5789**********999864 PP

>> PF00382.14  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.88     8e+02      18      29 ..       2      13 ..       1      16 [. 0.88
   2 ?   -0.8   0.0       1.3   1.2e+03      18      29 ..      38      49 ..      35      52 .. 0.84
   3 ?    0.7   0.0      0.45   4.1e+02      17      29 ..      73      85 ..      65      89 .. 0.87
   4 ?   -0.1   0.0      0.82   7.5e+02      18      28 ..     110     120 ..     107     122 .. 0.86
   5 ?    6.7   0.0    0.0061       5.6       4      34 ..     131     162 ..     130     164 .. 0.77
   6 ?    1.0   0.0      0.37   3.3e+02      17      29 ..     181     193 ..     177     195 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.88
                HHHHHHHHSSS- CS
  PF00382.14 18 Akelaklaleek 29
                A+e++++a++++
  MMETSP0890-20130614|3364_1  2 AVEWYRRAADQG 13
                99******9986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.3
                HHHHHHHHSSS- CS
  PF00382.14 18 Akelaklaleek 29
                A+e+++++++++
  MMETSP0890-20130614|3364_1 38 AVEWYRRSADQG 49
                99*****99986 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.45
                HHHHHHHHHSSS- CS
  PF00382.14 17 aAkelaklaleek 29
                 A+e++++a++++
  MMETSP0890-20130614|3364_1 73 IAVEWYRRAADQG 85
                59*******9986 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.82
                 HHHHHHHHSSS CS
  PF00382.14  18 Akelaklalee 28 
                 A+e++++a+++
  MMETSP0890-20130614|3364_1 110 AVEWYRRAADQ 120
                 9*******997 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0061
                 HHHHTT--H.HHHTHHHHHHHHHSSS-S---- CS
  PF00382.14   4 fadaLeLpk.kVadaAkelaklaleekllkGr 34 
                 f+++ +L   +  + A+e++++a+++++ kG 
  MMETSP0890-20130614|3364_1 131 FCYHYGLGVeQNYEIAVEWYRHAADQDNAKGQ 162
                 566666655455577*************9995 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHSSS- CS
  PF00382.14  17 aAkelaklaleek 29 
                  A+e++++a++++
  MMETSP0890-20130614|3364_1 181 LAVEWYRRAADQG 193
                 69********987 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   1.3e+03      20      27 ..       2       9 ..       2      11 .. 0.63
   2 ?    0.2   0.0      0.62   5.6e+02       1      12 [.      15      26 ..      15      27 .. 0.80
   3 ?    2.5   0.0      0.12   1.1e+02      15      26 ..      33      44 ..      31      47 .. 0.87
   4 ?    0.1   0.1      0.68   6.2e+02       1      11 [.      51      61 ..      51      63 .. 0.86
   5 ?    4.2   0.1     0.033        31      15      27 ..      69      81 ..      67      84 .. 0.89
   6 ?   -0.6   0.0       1.2   1.1e+03       1      12 [.      87      98 ..      87      99 .. 0.77
   7 ?    4.9   0.0      0.02        18      15      27 ..     105     117 ..     103     119 .. 0.90
   8 ?    3.3   0.1     0.069        63       1      12 [.     123     134 ..     123     136 .. 0.91
   9 ?    1.5   0.0      0.25   2.3e+02      15      27 ..     141     153 ..     137     157 .. 0.85
  10 ?    3.5   0.1     0.059        54       1      12 [.     159     170 ..     159     172 .. 0.86
  11 ?    6.9   0.0    0.0048       4.4      15      27 ..     177     189 ..     173     191 .. 0.90
  12 ?    0.4   0.0      0.57   5.2e+02       1      12 [.     195     206 ..     195     207 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.4
                HHHHHHHH CS
  PF00515.23 20 AleyyekA 27
                A+e y++A
  MMETSP0890-20130614|3364_1  2 AVEWYRRA 9 
                56666666 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.62
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a+a   lG +y+
  MMETSP0890-20130614|3364_1 15 ANAQHSLGECYY 26
                5677899***98 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.12
                T-HHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyek 26
                ++y+ A+e y++
  MMETSP0890-20130614|3364_1 33 QNYNLAVEWYRR 44
                69********98 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.68
                HHHHHHHHHHH CS
  PF00515.23  1 akalynlGnay 11
                a+a y lG+ y
  MMETSP0890-20130614|3364_1 51 ANAQYSLGYSY 61
                7899****999 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.033
                T-HHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekA 27
                ++y+ A+e y++A
  MMETSP0890-20130614|3364_1 69 QNYEIAVEWYRRA 81
                69**********9 PP

  == domain 6    score: -0.6 bits;  conditional E-value: 1.2
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a+a   lG +y+
  MMETSP0890-20130614|3364_1 87 ANAQHSLGECYH 98
                567788999997 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.02
                 T-HHHHHHHHHHH CS
  PF00515.23  15 gkydeAleyyekA 27 
                 ++y+ A+e y++A
  MMETSP0890-20130614|3364_1 105 QNYNLAVEWYRRA 117
                 69**********9 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.069
                 HHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnayl 12 
                 a+a y lG +y+
  MMETSP0890-20130614|3364_1 123 ADAQYSLGFCYH 134
                 89*********7 PP

  == domain 9    score: 1.5 bits;  conditional E-value: 0.25
                 T-HHHHHHHHHHH CS
  PF00515.23  15 gkydeAleyyekA 27 
                 ++y+ A+e y+ A
  MMETSP0890-20130614|3364_1 141 QNYEIAVEWYRHA 153
                 69********987 PP

  == domain 10    score: 3.5 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnayl 12 
                 ak  ++lGn+y 
  MMETSP0890-20130614|3364_1 159 AKGQCGLGNCYS 170
                 67889******6 PP

  == domain 11    score: 6.9 bits;  conditional E-value: 0.0048
                 T-HHHHHHHHHHH CS
  PF00515.23  15 gkydeAleyyekA 27 
                 ++yd A+e y++A
  MMETSP0890-20130614|3364_1 177 QNYDLAVEWYRRA 189
                 69**********9 PP

  == domain 12    score: 0.4 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnayl 12 
                 a a + lG++y 
  MMETSP0890-20130614|3364_1 195 AIAQFKLGLCYS 206
                 5678899***96 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.5     0.009       8.2      44      74 ..      13      47 ..       2      51 .. 0.72
   2 ?    8.9   1.4    0.0014       1.3      20      74 ..      70     119 ..      66     123 .. 0.75
   3 ?    5.7   2.9     0.014        13       5      75 ..      87     156 ..      83     159 .. 0.67
   4 ?    5.7   1.9     0.014        12      27      74 ..     142     191 ..     121     195 .. 0.67
   5 ?    6.3   0.4     0.009       8.2      18      33 ..     176     191 ..     164     224 .] 0.65

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.009
   PF13424.1 44 dtaralnnlanlyla.lg...dydeAleylekAle 74
                  a+a + l+++y+  +g   +y  A+e+++++ +
  MMETSP0890-20130614|3364_1 13 GSANAQHSLGECYYDgQGveqNYNLAVEWYRRSAD 47
                34888899999999855588788888888888765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0014
   PF13424.1  20 dydeAlelyekalellrelgddhpdtaralnnlanlyla.lg...dydeAleylekAle 74 
                 +y+ A e+y++a         d +  a+a + l+++y+  +g   +y  A+e++++A +
  MMETSP0890-20130614|3364_1  70 NYEIAVEWYRRAA--------DQG-SANAQHSLGECYHDgQGveqNYNLAVEWYRRAAD 119
                 4555555555554........334.5*************5559999**********987 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.014
   PF13424.1   5 atilnnlalvlr.rlg...dydeAlelyekalellrelgddhpdtaralnnlanlyla.lg...dydeAleylekAlei 75 
                 a++ + l+++++  +g   +y  A e+y++a         d +d a+a + l+ +y++ lg   +y+ A+e+++ A + 
  MMETSP0890-20130614|3364_1  87 ANAQHSLGECYHdGQGveqNYNLAVEWYRRAA--------DQGD-ADAQYSLGFCYHYgLGveqNYEIAVEWYRHAADQ 156
                 66777777777644432225555555555555........4567.8889999999988777877788888888888775 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.014
   PF13424.1  27 lyekalellrelgddhpdtaralnnlanlylalg....dydeAleylekAle 74 
                  ye a+e +r++ d +   a+    l+n+y        +yd A+e++++A +
  MMETSP0890-20130614|3364_1 142 NYEIAVEWYRHAADQD--NAKGQCGLGNCYSNGHgveqNYDLAVEWYRRAAD 191
                 4555555555444433..3677778888888844477788999999998876 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.009
   PF13424.1  18 lgdydeAlelyekale 33 
                 +++yd A e+y++a +
  MMETSP0890-20130614|3364_1 176 EQNYDLAVEWYRRAAD 191
                 4688888888888874 PP

>> PF13264.1  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.7   6.1e+03       9      20 ..       2      13 ..       1      21 [. 0.77
   2 ?    3.9   0.1     0.052        48       7      39 ..      36      68 ..      35     106 .. 0.72
   3 ?   -0.2   0.0      0.98     9e+02       7      28 ..     108     129 ..     107     144 .. 0.72
   4 ?    4.7   0.0      0.03        28       7      37 ..     144     174 ..     143     183 .. 0.81
   5 ?    2.1   0.0      0.19   1.7e+02       7      36 ..     180     209 ..     179     220 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.7
   PF13264.1  9 nikhyqnsaDye 20
                +++ y+  aD+ 
  MMETSP0890-20130614|3364_1  2 AVEWYRRAADQG 13
                788899999985 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.052
   PF13264.1  7 elnikhyqnsaDyeeslhvagqptlvisglede 39
                +l+++ y+ saD+ ++  + +    + +g   e
  MMETSP0890-20130614|3364_1 36 NLAVEWYRRSADQGHANAQYSLGYSYSIGKGVE 68
                689999*******99887777766666665444 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.98
   PF13264.1   7 elnikhyqnsaDyeeslhvagq 28 
                 +l+++ y+  aD+ ++  + + 
  MMETSP0890-20130614|3364_1 108 NLAVEWYRRAADQGDADAQYSL 129
                 689999******9876555555 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.03
   PF13264.1   7 elnikhyqnsaDyeeslhvagqptlvisgle 37 
                 e++++ y++ aD++++  ++g    + +g+ 
  MMETSP0890-20130614|3364_1 144 EIAVEWYRHAADQDNAKGQCGLGNCYSNGHG 174
                 6899***********9999998888877764 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.19
   PF13264.1   7 elnikhyqnsaDyeeslhvagqptlvisgl 36 
                 +l+++ y+  aD+ +++ +    + + +g 
  MMETSP0890-20130614|3364_1 180 DLAVEWYRRAADQGNAIAQFKLGLCYSNGQ 209
                 6899**********9998888777777775 PP

>> PF13557.1  Putative MetA-pathway of phenol degradation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.4     0.001      0.94     137     189 ..      27      81 ..       8      95 .. 0.73
   2 ?    4.8   1.9     0.022        20     134     205 ..      97     157 ..      81     201 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.001
   PF13557.1 137 pgggwelsanlgydfngendd..dyqsgdefhldftlgyaltpklsvgvegygyy 189
                 +g+g+e  +nl ++++ +  d  +  +  ++ +++++g+++ +++++ ve+y   
  MMETSP0890-20130614|3364_1  27 DGQGVEQNYNLAVEWYRRSADqgHANAQYSLGYSYSIGKGVEQNYEIAVEWYRRA 81 
                 57899****************6655555666678888889999*********444 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.022
   PF13557.1 134 qltpgggwelsanlgydfngendddyqsgdefhldftlgy..altpklsvgvegygyydqttddsvdgvkdgdr 205
                 +++ g+g+e  +nl ++++ +  d+ ++ ++++l f   y  ++ +++++ ve+y               +++ 
  MMETSP0890-20130614|3364_1  97 YHD-GQGVEQNYNLAVEWYRRAADQGDADAQYSLGFCYHYglGVEQNYEIAVEWYRHA------------ADQD 157
                 445.789*****************666667777777777744455699*****99443............2233 PP

>> PF03867.9  Fushi tarazu (FTZ), N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.9    0.0028       2.6      21      64 ..      18      62 ..       5      77 .. 0.83
   2 ?    4.7   0.6     0.015        14      21      60 ..      90     129 ..      77     160 .. 0.84
   3 ?   -2.6   0.0       2.5   2.3e+03      29      59 ..     169     200 ..     147     213 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0028
   PF03867.9 21 ahslpptyydnsssssayqstasqwqpasyqsnyqaays.qesys 64
                 hsl   yyd  + + +y+ + + ++ ++ q+  +a+ys   sys
  MMETSP0890-20130614|3364_1 18 QHSLGECYYDGQGVEQNYNLAVEWYRRSADQGHANAQYSlGYSYS 62
                59************9998888666678999********9777887 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
   PF03867.9  21 ahslpptyydnsssssayqstasqwqpasyqsnyqaaysq 60 
                  hsl   y+d  + + +y+ + + ++ a+ q++  a+ys 
  MMETSP0890-20130614|3364_1  90 QHSLGECYHDGQGVEQNYNLAVEWYRRAADQGDADAQYSL 129
                 59************9999888777779***********84 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.5
   PF03867.9  29 ydnsssssayqstasqwq.pasyqsnyqaays 59 
                 y n +   + ++ a +w   a+ q+n  a++ 
  MMETSP0890-20130614|3364_1 169 YSNGHGVEQNYDLAVEWYrRAADQGNAIAQFK 200
                 44444444445555556547888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 679.47
//
Query:       MMETSP0890-20130614|3370_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-33  111.8   1.0    2.4e-23   81.7   0.1    1.9  2  PF13424.1  Tetratricopeptide repeat
    1.7e-25   87.9   1.4    1.3e-12   47.0   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    3.3e-16   58.0   1.8    3.6e-09   35.7   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    7.4e-14   50.2   0.0    3.1e-07   29.5   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
    3.2e-13   48.3   1.2    1.2e-06   27.8   0.1    2.2  2  PF07719.12 Tetratricopeptide repeat
    8.4e-13   47.6   0.8    2.9e-07   29.9   0.1    2.1  2  PF13414.1  TPR repeat
    5.6e-10   39.5   0.1      8e-10   39.0   0.1    1.1  1  PF13432.1  Tetratricopeptide repeat
    8.4e-10   37.6   1.7    3.2e-05   23.2   0.2    2.2  2  PF13181.1  Tetratricopeptide repeat
    8.2e-08   32.1   0.3      0.015   15.8   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
      2e-07   30.5   2.8     0.0027   17.6   0.2    3.6  3  PF13431.1  Tetratricopeptide repeat
    3.9e-07   29.9   0.3     0.0096   16.2   0.1    2.3  2  PF13174.1  Tetratricopeptide repeat
    2.2e-06   27.4   0.0     0.0083   16.3   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
    2.2e-05   24.1   0.2      0.019   14.6   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00016   21.3   0.2      0.013   15.1   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
     0.0002   21.3   0.0    0.00056   19.8   0.0    1.6  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0042   16.9   0.1       0.23   11.3   0.0    2.1  1  PF12688.2  Tetratrico peptide repeat
  ------ inclusion threshold ------
       0.04   13.6   0.1       0.91    9.3   0.1    2.1  2  PF13371.1  Tetratricopeptide repeat
        0.1   11.4   0.0        1.6    7.4   0.0    1.9  2  PF04910.9  Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.4e-11   1.1e-08      34      77 ..       3      47 ..       1      48 [. 0.92
   2 !   81.7   0.1   3.2e-26   2.4e-23       2      78 .]      13      90 ..      12      90 .. 0.95

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.4e-11
   PF13424.1 34 l.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                +  ++lg++h+++a+   nla l+  +g+ydeA++++e+A+e  e
  MMETSP0890-20130614|3370_1  3 IhEEKLGPNHHQVATDFSNLAGLLKDQGKYDEAKPLFERAIENLE 47
                66789************************************9776 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 3.2e-26
   PF13424.1  2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                 ++at  +nla++l+ +g+ydeA  l+e+a+e   +++g++hp +a +lnnla l++++g+ydeA +++e+A+ei ek
  MMETSP0890-20130614|3370_1 13 HQVATDFSNLAGLLKDQGKYDEAKPLFERAIENlEKVHGPNHPKVAASLNNLAMLLQQQGKYDEAMPLYERAIEIWEK 90
                56888899*************************88889************************************9876 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.081        61      29      41 ..       1      13 [.       1      14 [. 0.79
   2 !   35.4   0.0   7.6e-12   5.8e-09       6      41 ..      20      55 ..      15      56 .. 0.95
   3 !   47.0   0.0   1.7e-15   1.3e-12       1      36 [.      57      92 ..      57      92 .. 0.97

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.081
   PF13374.1 29 lairrrllGddHP 41
                l i+++ lG++H 
  MMETSP0890-20130614|3370_1  1 LRIHEEKLGPNHH 13
                56788888****6 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 7.6e-12
   PF13374.1  6 nnLAlalrargryeeAlaleeealairrrllGddHP 41
                +nLA +l ++g+y+eA +l+e+a +  ++++G++HP
  MMETSP0890-20130614|3370_1 20 SNLAGLLKDQGKYDEAKPLFERAIENLEKVHGPNHP 55
                7**********************************9 PP

  == domain 3    score: 47.0 bits;  conditional E-value: 1.7e-15
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrll 36
                +aa+lnnLA++l+++g+y+eA +l+e+a +i+++++
  MMETSP0890-20130614|3370_1 57 VAASLNNLAMLLQQQGKYDEAMPLYERAIEIWEKVH 92
                89********************************95 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-07     9e-05       5      29 ..      20      44 ..      17      48 .. 0.94
   2 !   35.7   0.2   4.7e-12   3.6e-09       1      31 [.      58      88 ..      58      90 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.2e-07
                HHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23  5 ynlGnaylklgkydeAleyyekALe 29
                 nl+ ++  +gkydeA   +e+A+e
  MMETSP0890-20130614|3370_1 20 SNLAGLLKDQGKYDEAKPLFERAIE 44
                799*********************8 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 4.7e-12
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                a +l+nl+++++++gkydeA   ye+A+e+ 
  MMETSP0890-20130614|3370_1 58 AASLNNLAMLLQQQGKYDEAMPLYERAIEIW 88
                6789*************************95 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-06   0.00093       3      30 ..      20      45 ..      19      53 .. 0.87
   2 !   29.5   0.0   4.1e-10   3.1e-07       1      29 [.      60      88 ..      60      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.2e-06
   PF13176.1  3 lnLarlysrlgdyekAielyeraLaltk 30
                +nLa l  ++g+y++A  l+er  a+++
  MMETSP0890-20130614|3370_1 20 SNLAGLLKDQGKYDEAKPLFER--AIEN 45
                7*********************..6554 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 4.1e-10
   PF13176.1  1 allnLarlysrlgdyekAielyeraLalt 29
                +l+nLa l +++g+y++A  lyera++++
  MMETSP0890-20130614|3370_1 60 SLNNLAMLLQQQGKYDEAMPLYERAIEIW 88
                79**********************77765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.9e-07   0.00045       5      29 ..      20      44 ..      16      48 .. 0.90
   2 !   27.8   0.1   1.6e-09   1.2e-06       1      30 [.      58      87 ..      58      87 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 5.9e-07
                HHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  5 ynlGlayyklgdyeeAleafekAle 29
                 nl+ ++  +g+y+eA+ +fe+A+e
  MMETSP0890-20130614|3370_1 20 SNLAGLLKDQGKYDEAKPLFERAIE 44
                689999*****************98 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 1.6e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a  l+nl++++ ++g+y+eA  ++e+A+e+
  MMETSP0890-20130614|3370_1 58 AASLNNLAMLLQQQGKYDEAMPLYERAIEI 87
                5679************************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     2e-06    0.0016       3      39 ..      16      57 ..      14      61 .. 0.80
   2 !   29.9   0.1   3.8e-10   2.9e-07       2      35 ..      57      90 ..      56      93 .] 0.93

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2e-06
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnael 39
                A  + +l+  l  +g+ydeA  ++e+A+e       pn++++
  MMETSP0890-20130614|3370_1 16 ATDFSNLAGLLKDQGKYDEAKPLFERAIENLekvhgPNHPKV 57
                666789999999****************97445555999875 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 3.8e-10
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldpn 35
                +A +l++l++ l ++g+ydeA  +ye+A+e++++
  MMETSP0890-20130614|3370_1 57 VAASLNNLAMLLQQQGKYDEAMPLYERAIEIWEK 90
                799****************************975 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   1.1e-12     8e-10       3      60 ..      22      87 ..      21      90 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.1e-12
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                lA +l ++G+ydeA +++e+a+++         P+ a  l +la++l ++g++deA  l+++a+++
  MMETSP0890-20130614|3370_1 22 LAGLLKDQGKYDEAKPLFERAIENLekvhgpnhPKVAASLNNLAMLLQQQGKYDEAMPLYERAIEI 87
                7888999*****************99************************************9865 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.6e-05     0.035       6      29 ..      21      44 ..      19      47 .. 0.91
   2 !   23.2   0.2   4.2e-08   3.2e-05       2      30 ..      59      87 ..      58      87 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.6e-05
                T---HHHHTT-HHHHHHHHH---H CS
   PF13181.1  6 nlGdiYrqlGdydkAkeylekale 29
                nl+ ++++ G+yd+Ak  +e+a+e
  MMETSP0890-20130614|3370_1 21 NLAGLLKDQGKYDEAKPLFERAIE 44
                6777999***************97 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 4.2e-08
                --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalel 30
                ++++nl++++ q G+yd+A+  +e+a+e+
  MMETSP0890-20130614|3370_1 59 ASLNNLAMLLQQQGKYDEAMPLYERAIEI 87
                6799***********************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-05     0.015       6      35 ..      21      55 ..      16      67 .. 0.77
   2 !   15.6   0.1   2.2e-05     0.017       4      30 ..      61      87 ..      57      91 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.9e-05
   PF13428.1  6 alarallalGdpdeAiallrrala.....laPdda 35
                 la +l ++G +deA  l++ra++     ++P+++
  MMETSP0890-20130614|3370_1 21 NLAGLLKDQGKYDEAKPLFERAIEnlekvHGPNHP 55
                6999******************9966666445544 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.2e-05
   PF13428.1  4 llalarallalGdpdeAiallrralal 30
                l  la +l ++G +deA+ l++ra++ 
  MMETSP0890-20130614|3370_1 61 LNNLAMLLQQQGKYDEAMPLYERAIEI 87
                668999******************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0044       3.4      18      33 ..      21      36 ..       7      37 .. 0.78
   2 !   17.6   0.2   3.5e-06    0.0027       9      32 ..      54      77 ..      38      78 .. 0.72
   3 ?    3.0   0.0      0.17   1.3e+02       1       9 [.      80      88 ..      80      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0044
   PF13431.1 18 nLAelllnnGdleeAe 33
                nLA ll+++G+++eA+
  MMETSP0890-20130614|3370_1 21 NLAGLLKDQGKYDEAK 36
                99************97 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 3.5e-06
   PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
                +P+ a ++nnLA ll+ +G+++eA
  MMETSP0890-20130614|3370_1 54 HPKVAASLNNLAMLLQQQGKYDEA 77
                4556******************99 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.17
   PF13431.1  1 lyekaleld 9 
                lye+a+e+ 
  MMETSP0890-20130614|3370_1 80 LYERAIEIW 88
                7******86 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00035      0.26       7      29 ..      23      45 ..      20      45 .. 0.80
   2 !   16.2   0.1   1.3e-05    0.0096       5      28 ..      63      86 ..      63      88 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00035
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtdeAlealerlike 29
                a +++ +g++deA+ ++er i++
  MMETSP0890-20130614|3370_1 23 AGLLKDQGKYDEAKPLFERAIEN 45
                44555578************986 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la++++++g++deA+ ++er i+
  MMETSP0890-20130614|3370_1 63 NLAMLLQQQGKYDEAMPLYERAIE 86
                69*******************997 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002       1.5       5      26 .]      20      41 ..      19      41 .. 0.92
   2 !   16.3   0.0   1.1e-05    0.0083       2      26 .]      59      83 ..      58      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.002
                ---HHHHHH-------HHHHHT CS
   PF07721.9  5 laLArallalGdldeAraller 26
                ++LA +l ++G +deA  l+er
  MMETSP0890-20130614|3370_1 20 SNLAGLLKDQGKYDEAKPLFER 41
                68999***********999997 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.1e-05
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                + l +LA++l+++G +deA  l er
  MMETSP0890-20130614|3370_1 59 ASLNNLAMLLQQQGKYDEAMPLYER 83
                66789**************999887 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0025       1.9      17      38 ..      28      49 ..      12      62 .. 0.84
   2 !   14.6   0.0   2.6e-05     0.019      10      37 ..      63      90 ..      54      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0025
                HTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAlelLlqa 38
                ++gky+eA  l + A+e L+++
  MMETSP0890-20130614|3370_1 28 DQGKYDEAKPLFERAIENLEKV 49
                689****************986 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.6e-05
                HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
  PF04212.13 10 kkAveaDeagkyeeAlelYkeAlelLlq 37
                + A+   ++gky+eA  lY+ A+e++++
  MMETSP0890-20130614|3370_1 63 NLAMLLQQQGKYDEAMPLYERAIEIWEK 90
                556666789****************987 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.048        36      14      23 ..      29      38 ..      25      40 .. 0.82
   2 !   15.1   0.0   1.8e-05     0.013       7      27 ..      64      82 ..      60      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.048
                TT-HHHHHHH CS
   PF07720.7 14 kkkyqeArel 23
                ++ky+eA  l
  MMETSP0890-20130614|3370_1 29 QGKYDEAKPL 38
                9******655 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.8e-05
                HHHHHHHTT-HHHHHHH..HH CS
   PF07720.7  7 lAaefynkkkyqeArelfsYa 27
                lA  +++++ky+eA  l  Y+
  MMETSP0890-20130614|3370_1 64 LAMLLQQQGKYDEAMPL--YE 82
                7999**********999..64 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.4e-07   0.00056       1      50 [.      28      83 ..      28      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 7.4e-07
                HTT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2  1 eqhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk 50
                +q+ y++A  l+e++++   k      p  +a+l +lA  l+++g+y++A+ l+++
  MMETSP0890-20130614|3370_1 28 DQGKYDEAKPLFERAIENLEKvhgpnHPkVAASLNNLAMLLQQQGKYDEAMPLYER 83
                6899999999999999999989987533578899999*************999976 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0003      0.23       8      64 ..      23      84 ..      16      86 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0003
   PF12688.2  8 agarDstGeeakAvplYrrAlaa.....GLagarrrratiqlaSsLRnlGrveeslalleae 64
                ag     G+ ++A pl++rA+++     G +  +       la  L   G+ +e++ l e++
  MMETSP0890-20130614|3370_1 23 AGLLKDQGKYDEAKPLFERAIENlekvhGPNHPKVAASLNNLAMLLQQQGKYDEAMPLYERA 84
                66667778888888888888876332222233333333345666667777777777777665 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.094        71      36      60 ..      23      47 ..      13      64 .. 0.71
   2 ?    9.3   0.1    0.0012      0.91      34      57 ..      63      86 ..      53      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.094
   PF13371.1 36 GlllaqlgclaaAaedLeaflelcp 60
                + ll  +g + +A   +e+++e+ +
  MMETSP0890-20130614|3370_1 23 AGLLKDQGKYDEAKPLFERAIENLE 47
                6678889999999999999995444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0012
   PF13371.1 34 DrGlllaqlgclaaAaedLeafle 57
                  ++ll+q+g + +A+  +e+++e
  MMETSP0890-20130614|3370_1 63 NLAMLLQQQGKYDEAMPLYERAIE 86
                679**************9999986 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.033        25      46      81 ..      22      57 ..      18      63 .. 0.84
   2 ?    7.4   0.0    0.0021       1.6      41      72 ..      59      90 ..      52      93 .] 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.033
   PF04910.9 46 lsevyreqgdfevAndlieraLfilervfhpsFspl 81
                l+ +++ qg++ +A  l era+  le+v  p+  ++
  MMETSP0890-20130614|3370_1 22 LAGLLKDQGKYDEAKPLFERAIENLEKVHGPNHPKV 57
                788999****************99999988887665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0021
   PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfiler 72
                 +L +l++++++qg++ +A+ l era+ i e+
  MMETSP0890-20130614|3370_1 59 ASLNNLAMLLQQQGKYDEAMPLYERAIEIWEK 90
                6899**********************977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:01.08
# Mc/sec: 206.35
//
Query:       MMETSP0890-20130614|3366_1  [L=986]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-51  175.2   0.0    2.1e-51  174.8   0.0    1.1  1  PF00632.20 HECT-domain (ubiquitin-transferase)
    3.8e-13   48.3 138.2     0.0002   20.4   5.3    8.9  9  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   3.1e-55   2.1e-51       3     315 ..     648     985 ..     646     986 .] 0.87

  Alignments for each domain:
  == domain 1    score: 174.8 bits;  conditional E-value: 3.1e-55
                 HHHHHT-TT---EESSTT---EEE-TT-......----T................THHHHHHH-------TTT---..-----B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----EEEEES-------B--TTTHHHHHHHH.HHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHH.HHHHHHHHHHHHT.----- CS
  PF00632.20   3 lskellnpklglfyvyessgllypnkplsrdsdleessn................dnlklfkflGkligkaiyegi..lldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedeielvelipnGanipVtnenkeeYikly.vnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsske.ilkekLltAieegqegFel 315
                  + +++n  +glf  +++ g++++  p + +    +s++                 +l+ ++f+G+ ++k++++g+   l  + +  +lk+l+ g+++ ++dl+ +d+e+  slk+++ l+ ++  +++l +tF+++ +  +++i+++el+  Ga+ +V   n++e+++    ++++ ++ ++ l+a+  Gf++vip     l+t++elel +cG +  id+ d+++ntey+g+y+   + +p++  +w+ l  +++e+r+++L+  TGs +lP+gGfa+l+      +kft    + +++ +P a+TCfn+++Lp Y++ +  l +kL ++i ++ + F++
  MMETSP0890-20130614|3366_1 648 TMDQAFNDTFGLFRRSTNAGTYDIADPAPPPIGVGNSYSkwgeqifespedeakrLRLDEYRFIGRGLAKILFDGHggCLGPSPNVKILKLLV-GEPFIFDDLQLVDEEIWTSLKKMRALSDQD--LRALMVTFSVSNQLPDGRIQTTELCDRGADRSVHIGNVNEFCEARlRHAVFPKQHQPALTALVAGFHDVIPPAVTLLLTARELELALCGLPS-IDLADMQANTEYRGEYReqkEAHPVCAAFWHTLYAWDDEKRARLLQWATGSAKLPVGGFANLQqrdgvsRKFTLTSIDLSSAVYPRAHTCFNRIDLPLYENPDnDLPDKLAFCILQATGEFNM 985
                 6788999999***77777777777777666666666555777777777777776677888**************9954455566777899999.************************887665..569******977666799*9**********************9651667*******************************************.*****************666678****************************************88888888887777778888*****************975279*******9999777875 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       0.6   4.1e+03      21      28 ..       5      12 ..       3      21 .. 0.55
   2 !   14.2   6.7   2.5e-06     0.017       6      35 ..      36      65 ..      26      66 .. 0.72
   3 ?   -5.4  19.4         2   1.4e+04       2      30 ..      56      85 ..      56     104 .. 0.65
   4 !   19.6   5.1   5.3e-08   0.00036       2      36 .]      95     129 ..      94     129 .. 0.94
   5 !   10.5  15.0   3.8e-05      0.26       1      35 [.     134     168 ..     127     168 .. 0.73
   6 !   14.0   8.2   3.1e-06     0.021       1      35 [.     154     188 ..     154     193 .. 0.89
   7 !   16.0  11.9   6.9e-07    0.0047       1      36 []     195     230 ..     195     230 .. 0.96
   8 !   20.4   5.3   2.9e-08    0.0002       2      35 ..     236     269 ..     235     274 .. 0.72
   9 ?   -2.9   1.1      0.57   3.9e+03       5      10 ..     525     530 ..     519     533 .. 0.45

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.6
   PF04886.7 21 qPTdqPta 28
                 PT +P++
  MMETSP0890-20130614|3366_1  5 APTLAPIN 12
                34444444 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.5e-06
   PF04886.7  6 PteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                Pt+ PT+ PT  P++ PT  P+++P+  Pt
  MMETSP0890-20130614|3366_1 36 PTGLPTGRPTSYPSPFPTELPSSEPSRSPT 65
                777777777777777777777777777776 PP

  == domain 3    score: -5.4 bits;  conditional E-value: 2
   PF04886.7  2 pTaqPteqPTvq.PTgqPtaqPTdqPtaqP 30
                p+++P+  PT+  P+  P+++PT+ Pt +P
  MMETSP0890-20130614|3366_1 56 PSSEPSRSPTTSkPSPRPSPEPTGTPTISP 85
                677777777653377777777777777554 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 5.3e-08
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 p+a P++ PTv PT  Pt +PT+ Pt+ Pt  P++
  MMETSP0890-20130614|3366_1  95 PSALPSSFPTVIPTPFPTIEPTSIPTSRPTRIPSP 129
                 8999**************************99875 PP

  == domain 5    score: 10.5 bits;  conditional E-value: 3.8e-05
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 +pT+ Pt++PT  P+  Pt++P+  Pt++Pt+ Pt
  MMETSP0890-20130614|3366_1 134 EPTSIPTSKPTRIPSPIPTSEPSLFPTSGPTQLPT 168
                 57777777777777777777777777777777776 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 3.1e-06
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 +p+  Pt++PT+ PT +P+  P+  Pta Pt +Pt
  MMETSP0890-20130614|3366_1 154 EPSLFPTSGPTQLPTSPPSFHPSRIPTAIPTLKPT 188
                 57777999999999999999999999999999998 PP

  == domain 7    score: 16.0 bits;  conditional E-value: 6.9e-07
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 ++T+qP+++PT  PT  Pt  PT+ Pt  P+d P++
  MMETSP0890-20130614|3366_1 195 PSTEQPSGGPTYIPTPKPTEFPTSMPTPRPSDVPSP 230
                 68******************************9986 PP

  == domain 8    score: 20.4 bits;  conditional E-value: 2.9e-08
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pT +Pt +P+v PT  P+++P++ P+  Pt+ Pt
  MMETSP0890-20130614|3366_1 236 PTFYPTQKPSVFPTTCPSPEPSSHPSLVPTAVPT 269
                 6777777777777777777777777777777776 PP

  == domain 9    score: -2.9 bits;  conditional E-value: 0.57
   PF04886.7   5 qPteqP 10 
                 +Pt+ P
  MMETSP0890-20130614|3366_1 525 EPTALP 530
                 333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.63u 0.40s 00:00:02.02 Elapsed: 00:00:01.31
# Mc/sec: 1803.67
//
Query:       MMETSP0890-20130614|3376_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 565.81
//
Query:       MMETSP0890-20130614|3374_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   55.3  11.3    3.7e-10   39.1   0.7    3.0  3  PF00514.18 Armadillo/beta-catenin-like repeat
    0.00049   19.1   2.8    0.00056   18.9   1.9    1.1  1  PF04826.8  Armadillo-like
     0.0056   16.6   4.8      0.061   13.2   0.3    2.0  2  PF14459.1  Prokaryotic E2 family C
     0.0057   17.0   6.9     0.0058   17.0   2.5    1.9  2  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
      0.014   15.5   5.2      0.021   14.9   3.6    1.4  1  PF13646.1  HEAT repeats
        0.2   11.0   2.6       0.24   10.7   1.8    1.0  1  PF07071.6  Protein of unknown function (DUF1341)
       0.26   10.0   0.9        6.8    5.4   0.1    2.0  2  PF02358.11 Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.8     0.012        24      29      41 .]       6      18 ..       3      18 .. 0.89
   2 !   39.1   0.7   1.9e-13   3.7e-10       2      40 ..      20      58 ..      19      59 .. 0.94
   3 !   17.6   0.0   1.1e-06    0.0021       2      24 ..      61      83 ..      60      84 .] 0.89

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHT CS
  PF00514.18 29 qeeAawALsNLaa 41
                +e+Aa+AL NLaa
  MMETSP0890-20130614|3374_1  6 KEYAAAALNNLAA 18
                799********96 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 1.9e-13
                HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                  n  a+ +aGa++pL++LL+sg    +e+Aa+AL+NLa
  MMETSP0890-20130614|3374_1 20 ANNQIAIANAGAIRPLIALLSSGTATAKENAAGALRNLA 58
                56889999******************************9 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18  2 penkqavieaGavppLvqLLksg 24
                  n  a+ +aGa++pL++LL+sg
  MMETSP0890-20130614|3374_1 61 ANNQIAIANAGAIQPLIALLSSG 83
                56889999************985 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.9   2.8e-07   0.00056      29      91 ..       5      67 ..       2      80 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.8e-07
   PF04826.8 29 iqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqkki 91
                 +e a  +l n aa + nq  i + g i  + +lls+  ++ ke+a  al nl+vn++nq  i
  MMETSP0890-20130614|3374_1  5 AKEYAAAALNNLAANANNQIAIANAGAIRPLIALLSSGTATAKENAAGALRNLAVNANNQIAI 67
                578999**********************99999**************************9876 PP

>> PF14459.1  Prokaryotic E2 family C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.3    0.0049       9.5      39      63 ..       6      30 ..       2      33 .. 0.85
   2 !   13.2   0.3   3.1e-05     0.061      26      65 ..      32      73 ..      29      84 .] 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0049
   PF14459.1 39 askqakalerlaksinekigirrsg 63
                 +  a al++la   n++i+i+ +g
  MMETSP0890-20130614|3374_1  6 KEYAAAALNNLAANANNQIAIANAG 30
                4567899**************9988 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.1e-05
   PF14459.1 26 lypvlailplgsaask..qakalerlaksinekigirrsgks 65
                + p +a+l +g a+ k   a al +la   n++i+i+ +g  
  MMETSP0890-20130614|3374_1 32 IRPLIALLSSGTATAKenAAGALRNLAVNANNQIAIANAGAI 73
                5699******998654125789***************99975 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.5   2.9e-06    0.0058       5      55 .]       7      57 ..       5      57 .. 0.88
   2 ?    2.3   0.1      0.13   2.5e+02      14      38 ..      57      81 ..      55      83 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.9e-06
   PF13513.1  5 raAawaLGr.laggeprllepavpellpaLlelLeddddeVReaAawALgrl 55
                + Aa+aL + la+++ ++++ a+  ++ +L++lL++  +  +e+Aa+AL +l
  MMETSP0890-20130614|3374_1  7 EYAAAAL-NnLAANANNQIAIANAGAIRPLIALLSSGTATAKENAAGALRNL 57
                5688888.5589**********************8777788********997 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.13
   PF13513.1 14 laggeprllepavpellpaLlelLe 38
                la+++ ++++ a+  ++++L++lL+
  MMETSP0890-20130614|3374_1 57 LAVNANNQIAIANAGAIQPLIALLS 81
                5678888888889999999999985 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.6   1.1e-05     0.021      18      73 ..      10      82 ..       2      84 .] 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
   PF13646.1 18 aaaieaLg.......qlgseealpaLlelLkdsdpevRraAaeaLgkl..........gdpealpaLlklldd 73
                aaa++ L+        ++++ a+ +L++lL++  +  +++Aa aL +l          ++  a+++L+ ll +
  MMETSP0890-20130614|3374_1 10 AAALNNLAanannqiAIANAGAIRPLIALLSSGTATAKENAAGALRNLavnannqiaiANAGAIQPLIALLSS 82
                4555555588888777788899************************995555444444488899999998865 PP

>> PF07071.6  Protein of unknown function (DUF1341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.8   0.00012      0.24       5      61 ..      11      68 ..       8      78 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
                B-EEE----HHHHHHHHHHT---EEB---GGGSSSH.HHHHHHHHHHHHTTTT-BEE- CS
   PF07071.6  5 vllnvLakdvenakeiyeaaeghvlvGvlsknyetv.eeavedvkkykaeidnaisvG 61
                ++ln La + +n  +i +a   + l+ +ls+  +t+ e+a+  +++++ +++n i++ 
  MMETSP0890-20130614|3374_1 11 AALNNLAANANNQIAIANAGAIRPLIALLSSGTATAkENAAGALRNLAVNANNQIAIA 68
                689***************************9998872568889**********99986 PP

>> PF02358.11  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0035       6.8      22      42 ..       7      27 ..       1      38 [. 0.84
   2 ?    3.8   0.0     0.011        21      18      42 ..      44      68 ..      38      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0035
  PF02358.11 22 dellslLkkLasdpknvvaii 42
                + +  +L++La++ +n++ai 
  MMETSP0890-20130614|3374_1  7 EYAAAALNNLAANANNQIAIA 27
                556789*************95 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.011
  PF02358.11 18 avpsdellslLkkLasdpknvvaii 42
                a+ ++++  +L++La + +n++ai 
  MMETSP0890-20130614|3374_1 44 ATAKENAAGALRNLAVNANNQIAIA 68
                5667888999***********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:01.06
# Mc/sec: 189.90
//
Query:       MMETSP0890-20130614|3379_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.32s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 290.47
//
Query:       MMETSP0890-20130614|3387_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-20   71.6   0.1    5.2e-11   41.8   0.0    3.0  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.013   13.6   1.1        0.2    9.6   0.7    1.9  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.7e-06     0.025      25      39 .]       3      17 ..       1      17 [. 0.92
   2 !   41.8   0.0   7.6e-15   5.2e-11       5      38 ..      24      57 ..      20      58 .. 0.95
   3 !   12.7   0.0   1.2e-05      0.08       3      22 ..      64      83 ..      62      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.7e-06
                EEEEEETTSEEEEEE CS
  PF00400.27 25 llasgSrDgtirlWd 39
                 lasg +D+++r W+
  MMETSP0890-20130614|3387_1  3 QLASGADDNKVRFWN 17
                79************7 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 7.6e-15
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlW 38
                ++l+gH+++V+++a+s +g  l+s+S+Dgt+rlW
  MMETSP0890-20130614|3387_1 24 RELEGHEGSVNSIAYSLNGLTLVSASADGTCRLW 57
                789******************************* PP

  == domain 3    score: 12.7 bits;  conditional E-value: 1.2e-05
                EEEEEESSSSSEEEEEEESS CS
  PF00400.27  3 ckatlrgHtspVtcvafspd 22
                +++++ g t++V ++ fsp+
  MMETSP0890-20130614|3387_1 64 QLRVFGGGTDGVFSIVFSPN 83
                789****************8 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.7   2.9e-05       0.2     240     302 ..      10      56 ..       6      60 .. 0.74
   2 ?    6.0   0.0   0.00036       2.5     228     255 ..      40      66 ..      24      70 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.9e-05
   PF11715.3 240 DgkLRvWnletgqclrttdileaaellpadslsyipepsesslirvislaflpsradssgsrl 302
                 D+k+R Wn++t+ c         +el+  + +  ++++s ++  +++      s++ ++++rl
  MMETSP0890-20130614|3387_1  10 DNKVRFWNTDTNEC---------RELEGHEGSVNSIAYS-LNGLTLV------SASADGTCRL 56 
                 9*************.........8888888888888888.4444444......4555566555 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00036
   PF11715.3 228 vegqtfvftlsrDgkLRvWnletgqclr 255
                 ++g t+v + s+Dg+ R+W +++g +lr
  MMETSP0890-20130614|3387_1  40 LNGLTLV-SASADGTCRLWAVTNGLQLR 66 
                 5777777.9**************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.92
# Mc/sec: 221.40
//
Query:       MMETSP0890-20130614|3397_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 330.70
//
Query:       MMETSP0890-20130614|3395_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   30.9   0.0    1.6e-07   30.9   0.0    2.3  2  PF01844.18 HNH endonuclease
  ------ inclusion threshold ------
      0.017   14.6   0.3       0.13   11.8   0.0    2.2  2  PF08807.5  Bacterial domain of unknown function (DUF1798)
      0.022   13.9   1.3      0.057   12.6   0.9    1.7  1  PF12855.2  Life-span regulatory factor


Domain annotation for each model (and alignments):
>> PF01844.18  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.5       2.2     1e+04       1       7 [.     161     167 ..     161     170 .. 0.74
   2 !   30.9   0.0   3.6e-11   1.6e-07      12      46 ..     215     250 ..     205     251 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.2
  PF01844.18   1 CqyCgrk 7  
                 Cq Cg +
  MMETSP0890-20130614|3395_1 161 CQNCGVD 167
                 9999865 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 3.6e-11
  PF01844.18  12 dalevdHIiplsk.ggaddlsNlvllCksCHrkkhr 46 
                  a+e dHI  +++ gg+ + + l++lC  CH++k+r
  MMETSP0890-20130614|3395_1 215 LAWEADHIYRVADgGGEATVEQLQTLCVPCHKNKTR 250
                 589**********9999*****************98 PP

>> PF08807.5  Bacterial domain of unknown function (DUF1798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.15   6.7e+02      71      98 ..      95     122 ..      92     124 .. 0.83
   2 ?   11.8   0.0   2.8e-05      0.13      68      99 ..     231     262 ..     229     270 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.15
   PF08807.5  71 venleelsvqsffpktskkrflellkSv 98 
                 ++++ +++v++ff+     +  e+ +S+
  MMETSP0890-20130614|3395_1  95 CSEFFKVAVDAFFETNTSTLQGEIKRSI 122
                 5667789*******99999888888887 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 2.8e-05
   PF08807.5  68 esvvenleelsvqsffpktskkrflellkSvk 99 
                 e++ve+l++l+v ++ +kt+    ++ ++S+k
  MMETSP0890-20130614|3395_1 231 EATVEQLQTLCVPCHKNKTRSENTKDRIQSTK 262
                 689***************************87 PP

>> PF12855.2  Life-span regulatory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   1.3e-05     0.057      18      34 ..     101     140 ..      91     147 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
   PF12855.2  18 t.......................asdnslYCSeeCkekD 34 
                 +                       a+ +sl+CS++C+ k 
  MMETSP0890-20130614|3395_1 101 VavdaffetntstlqgeikrsitaANMSSLFCSQKCRDKY 140
                 455555555555555555555555999**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:01.17
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|3398_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.81
# Mc/sec: 508.86
//
Query:       MMETSP0890-20130614|3410_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-26   91.3   0.6    2.1e-13   49.8   0.1    1.9  2  PF13424.1  Tetratricopeptide repeat
    5.4e-16   57.7   2.7    4.6e-14   51.6   0.1    2.3  3  PF13374.1  Tetratricopeptide repeat
    1.2e-07   30.9   0.2    1.8e-07   30.3   0.2    1.3  1  PF00515.23 Tetratricopeptide repeat
    1.1e-06   28.1   0.2    1.5e-06   27.5   0.1    1.3  1  PF13414.1  TPR repeat
    1.2e-06   27.9   0.1    1.6e-06   27.4   0.1    1.3  1  PF07719.12 Tetratricopeptide repeat
    2.6e-06   26.6   0.0    3.7e-06   26.2   0.0    1.2  1  PF13176.1  Tetratricopeptide repeat
      8e-06   25.1   0.1    1.1e-05   24.7   0.1    1.2  1  PF13181.1  Tetratricopeptide repeat
    1.3e-05   24.8   0.2      0.029   14.4   0.1    2.5  2  PF13431.1  Tetratricopeptide repeat
    0.00028   21.1   0.1    0.00083   19.6   0.0    1.7  2  PF13428.1  Tetratricopeptide repeat
     0.0041   17.6   0.0     0.0044   17.5   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.037   14.3   0.0      0.059   13.7   0.0    1.3  1  PF13174.1  Tetratricopeptide repeat
      0.088   13.1   0.0       0.12   12.7   0.0    1.3  1  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   5.3e-15     6e-12      35      78 .]       4      47 ..       1      47 [. 0.94
   2 !   49.8   0.1   1.8e-16   2.1e-13       1      50 [.      11      61 ..      11      62 .] 0.97

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 5.3e-15
   PF13424.1 35 lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                 + lg++hp++a+ lnnla+l++ +g++deA++++e+A+ei+ek
  MMETSP0890-20130614|3410_1  4 EKALGPNHPEVATELNNLAELLRDQGKNDEAKPLYERAIEIDEK 47
                6789*************************************986 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 1.8e-16
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaraln 50
                hp++at lnnla++lr +g+ deA  lye+a+e+  +++g++hpd+a++ln
  MMETSP0890-20130614|3410_1 11 HPEVATELNNLAELLRDQGKNDEAKPLYERAIEIdEKTHGPNHPDVATSLN 61
                899*******************************999************98 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0053       6.1      33      42 .]       4      13 ..       1      13 [. 0.83
   2 !   51.6   0.1     4e-17   4.6e-14       1      42 []      14      55 ..      14      55 .. 0.97
   3 ?   -2.9   0.1         6   6.8e+03       1       6 [.      56      61 ..      56      61 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0053
   PF13374.1 33 rrllGddHPd 42
                ++ lG++HP+
  MMETSP0890-20130614|3410_1  4 EKALGPNHPE 13
                7889*****6 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 4e-17
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +lr++g+ +eA +l+e+a +i ++ +G++HPd
  MMETSP0890-20130614|3410_1 14 VATELNNLAELLRDQGKNDEAKPLYERAIEIDEKTHGPNHPD 55
                6788*************************************8 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 6
   PF13374.1  1 taaaln 6 
                +a++ln
  MMETSP0890-20130614|3410_1 56 VATSLN 61
                799998 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.2   1.6e-10   1.8e-07       3      32 ..      17      46 ..      15      47 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.6e-10
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALelnP 32
                 l+nl+ +++ +gk deA   ye+A+e+++
  MMETSP0890-20130614|3410_1 17 ELNNLAELLRDQGKNDEAKPLYERAIEIDE 46
                69**************************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   1.3e-09   1.5e-06       1      38 [.      13      55 ..      13      60 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.3e-09
   PF13414.1  1 enAealkelGnalfkegdydeAieayekAleld.....pnnae 38
                e+A +l++l++ l  +g+ deA  +ye+A+e+d     pn+++
  MMETSP0890-20130614|3410_1 13 EVATELNNLAELLRDQGKNDEAKPLYERAIEIDekthgPNHPD 55
                57999***************************98888888887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.4e-09   1.6e-06       2      32 ..      16      46 ..      15      48 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.4e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldP 32
                  l+nl+++++ +g+ +eA+ ++e+A+e+d 
  MMETSP0890-20130614|3410_1 16 TELNNLAELLRDQGKNDEAKPLYERAIEIDE 46
                579**************************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.2e-09   3.7e-06       2      31 ..      18      47 ..      17      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 3.2e-09
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkd 31
                l+nLa+l +++g+ ++A  lyera+++++ 
  MMETSP0890-20130614|3410_1 18 LNNLAELLRDQGKNDEAKPLYERAIEIDEK 47
                89*********************7777765 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   9.5e-09   1.1e-05       3      32 ..      17      46 ..      15      49 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 9.5e-09
                -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkp 32
                +++nl++++r+ G+ d+Ak  +e+a+e++ 
  MMETSP0890-20130614|3410_1 17 ELNNLAELLRDQGKNDEAKPLYERAIEIDE 46
                799*************************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.5e-05     0.029      13      33 ..      15      35 ..       4      36 .. 0.79
   2 !    8.4   0.0    0.0022       2.5       1      16 [.      37      57 ..      37      60 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.5e-05
   PF13431.1 13 adaynnLAelllnnGdleeAe 33
                a  +nnLAell ++G+ +eA+
  MMETSP0890-20130614|3410_1 15 ATELNNLAELLRDQGKNDEAK 35
                44467**************97 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0022
   PF13431.1  1 lyekaleld.....Pnnaday 16
                lye+a+e+d     Pn++d+ 
  MMETSP0890-20130614|3410_1 37 LYERAIEIDekthgPNHPDVA 57
                7*******9878888888875 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.7   1.9e+03      29      41 ..       6      18 ..       4      19 .. 0.80
   2 !   19.6   0.0   7.3e-07   0.00083       4      37 ..      18      56 ..      14      60 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.7
   PF13428.1 29 alaPddaealllL 41
                al+P+++e+ ++L
  MMETSP0890-20130614|3410_1  6 ALGPNHPEVATEL 18
                4789999998776 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 7.3e-07
   PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaea 37
                l  la++l+++G  deA  l++ra++     ++P+++++
  MMETSP0890-20130614|3410_1 18 LNNLAELLRDQGKNDEAKPLYERAIEidektHGPNHPDV 56
                5679*********************95555555666665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.8e-06    0.0044       2      32 ..      20      55 ..       5      61 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.8e-06
   PF13432.1  2 alArallraGdydeAlaaleaalala.....Peaae 32
                 lA++l ++G+ deA +++e+a++ +     P +++
  MMETSP0890-20130614|3410_1 20 NLAELLRDQGKNDEAKPLYERAIEIDekthgPNHPD 55
                478888888888888888888887776666666665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.2e-05     0.059       5      28 ..      20      43 ..      20      45 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.2e-05
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la++++ +g+ deA+ ++er i+
  MMETSP0890-20130614|3410_1 20 NLAELLRDQGKNDEAKPLYERAIE 43
                69*******************997 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011      0.12       6      26 .]      20      40 ..      18      40 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00011
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                +LA++l ++G  deA  l er
  MMETSP0890-20130614|3410_1 20 NLAELLRDQGKNDEAKPLYER 40
                8**************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:01.32
# Mc/sec: 112.56
//
Query:       MMETSP0890-20130614|3402_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-83  278.4  30.0    9.1e-83  278.1  20.8    1.0  1  PF00083.19 Sugar (and other) transporter
    1.9e-25   89.2  31.9    1.9e-25   89.2  22.1    2.0  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.1  20.8   1.3e-86   9.1e-83       4     449 ..      58     492 ..      55     494 .. 0.93

  Alignments for each domain:
  == domain 1    score: 278.1 bits;  conditional E-value: 1.3e-86
  PF00083.19   4 vaalggflfGYdtgvigatltlikfaknfglltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsnadgwrillglqlvpalllllll.lflpeSprylvlkgkleeArevlkk.lrgsedadqeiqeekdslersreee...aswkelfsqkt..vrqrlligvvlqifqqltGinaimyYsptifetlglsks..llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetkgrtleeiee 449
                 +aal +   G+d+gv+++++++i+      ++ s+        +++++++++++ a++G+ +a + +dr+GR+ ++ +++++f+ g+  +a++    ++++++  R i+G+gvG+   + P++isE++p+ +rg l+++++ +i +Gil+++i  +g++ +s    wr++lg  ++ + +ll+++ +++peSpr+l+ +g ++eAr+vl+k ++  ed+++ ++e+++++ +++++     sw++++  +t   r+++++gv+++++qq     ++ +Y p+i+e+  +     +++ i +g++++v +++++ + d +GRR++ll+++ gm i++  ++   l  +a       +a+v+i  +++ff+lg+gp +w+l++E+fp+++R++a+aia+++n +++++++  f   ++a g + +f+ fa+l+ ++ + +ff vpetkg+tle+++ 
  MMETSP0890-20130614|3402_1  58 MAALNSANLGFDIGVMSGAAEFIQ----DDWNLSDA-------QLSILIGILNASAIFGAALAHYSIDRLGRRATFGISCFIFITGVSGMALSL---NFAMILCFRTITGFGVGIGLSIDPVFISEVSPAGVRGELVTWSEISINIGILIGFIASYGFKDMSTGIAWRLMLGCGIIAPFILLICVfTIMPESPRWLIARGYETEARKVLSKlTWPDEDRSAILKEIQNAVREEKKSHlseLSWRQILFPPTpgLRRAIMVGVGVATAQQILVEESLLFYFPEILESMNVARVhvFMALIAMGILKTVCIIISACFLDSAGRRPMLLISIGGMGIALAGVA---LSFLAHL---PWGAVVCIWGYMSFFSLGIGPGCWLLAAEVFPLAIRARAMAIATTSNRIVSAVVASSFLPWAKAVGFATYFFCFAILAFFVWILIFFYVPETKGKTLEAMAD 492
                 89999999***************9....66666664.......568************************************************...9************************************************************888888************9999999883568***********999********65666777777777777777776666999*********9999****************************************999999999*********************************99985...5555553...7899999999999*****************************************************9999999*************************9975 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2  22.1   2.8e-29   1.9e-25       8     352 ..      66     443 ..      53     445 .. 0.83
   2 !    9.2   7.6   5.7e-05      0.39      98     185 ..     404     489 ..     401     516 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 2.8e-29
  PF07690.11   8 aalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslg..WravFlilailsllaavlvllllprepperkrkspaeel...............................rkepaplvpawklllkppvlw..illialllfffvfsg.....lltllplylqevlglsp.glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvl..iGfglglvfptllalasdlappeerGtasglfntagslggal 352
                  ++++++ + a+  ++++d ++s +++++l+++  + +++++ la + +dr+Grr ++ ++ ++f+ g+  +++ s  +a++l +r ++G+g g+++++  ++i++++p   rg  + +  +++++G+++g +++  +   s g  Wr++     i+ +++++   ++++  p ++++   +                                  +k + + ++ w+++l pp      ++++ ++++++ ++     ll+++p +  e ++     +++a++++g+l  ++    ++++ ++d  grr++ll++++++ +a++g+al +++ + +w ++v++   ++f++  + p ++ la++++p   r++a+++++t + +++a+
  MMETSP0890-20130614|3402_1  66 LGFDIGVMSGAAE-FIQDDWNLSDAQLSILIGILNASAIFGAALAHYSIDRLGRRATFGISCFIFITGVSGMAL-SLNFAMILCFRTITGFGVGIGLSIDPVFISEVSPAGVRGELVTWSEISINIGILIGFIASYGFKdMSTGiaWRLMLGCGIIAPFILLI---CVFTIMPESPRWLIARGYEtearkvlskltwpdedrsailkeiqnavreeKKSHLSELS-WRQILFPPTPGlrRAIMVGVGVATAQQIlveesLLFYFPEI-LESMNVARvHVFMALIAMGILKTVC---IIISACFLDSAGRRPMLLISIGGMGIALAGVALSFLA-HLPWGAVVCIWgyMSFFSLGIGPGCWLLAAEVFPLAIRARAMAIATTSNRIVSAV 443
                 4566666777777.******************************************************555556.55666********************************************************998555557788775555555555555...56656666666655555556789999999999999999999999888877667777777.*******95534656666666655666689999*******7.9******9988****9999999999...5568888899999************************.7777777777777777555569****************************99887 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 5.7e-05
  PF07690.11  98 lgagalfpagaaliadwfpkeergralgllsagfslGailg.pllggllasslgWravFlilailsllaavlvllllprepperkrksp 185
                 +++ ++ p++  l+a++fp   r+ra++++++++ + +++    + ++   ++g+   F+ +ail++++ +l  +++++++++ k+ + 
  MMETSP0890-20130614|3402_1 404 FFSLGIGPGCWLLAAEVFPLAIRARAMAIATTSNRIVSAVVaSSFLPWA-KAVGFATYFFCFAILAFFVWIL--IFFYVPETKGKTLEA 489
                 55556677888899************************66615555555.6999*99999999999999888..777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:01.15
# Mc/sec: 1200.24
//
Query:       MMETSP0890-20130614|3418_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.7    8.6  13.1        0.5   10.4   1.4    2.6  2  PF03422.10 Carbohydrate binding module (family 6)


Domain annotation for each model (and alignments):
>> PF03422.10  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.4   3.7e-05       0.5      43      82 ..      28      67 ..      21      88 .. 0.85
   2 ?    3.0   2.7     0.007        95      41      81 ..     117     157 ..      78     180 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.7e-05
                S-B-EEEEEEEE-S-----EEEE-------B---B----- CS
  PF03422.10 43 ssgaysltarvanggsggsieirldsadgtlvgtvsvpst 82
                ++ga  + + va+gg+gg+i+i ++s ++   gtvsv+s 
  MMETSP0890-20130614|3418_1 28 NTGALFIGSGVATGGRGGAIQITAGSGTSGAGGTVSVASG 67
                6677666699****************99999*****9774 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.007
                 -SS-B-EEEEEEEE-S-----EEEE-------B---B---- CS
  PF03422.10  41 fgssgaysltarvanggsggsieirldsadgtlvgtvsvps 81 
                  g+sga  + + v++ g+gg+++++++s ++   g vsv++
  MMETSP0890-20130614|3418_1 117 GGNSGALCFGSGVSTAGRGGAVTLSVGSGTSGAGGLVSVSA 157
                 578888889999****************7777777777743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.63
# Mc/sec: 806.39
//
Query:       MMETSP0890-20130614|3415_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       719  (0.0525892); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                       100  (0.00731422); expected 13.7 (0.001)
Passed Fwd filter:                        51  (0.00373025); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.11u 0.45s 00:00:01.56 Elapsed: 00:00:00.94
# Mc/sec: 678.12
//
Query:       MMETSP0890-20130614|3426_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 133.82
//
Query:       MMETSP0890-20130614|3424_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-08   33.4   0.0    1.3e-05   25.1   0.0    2.4  2  PF13508.1  Acetyltransferase (GNAT) domain
    0.00096   19.0   0.1      0.003   17.4   0.0    1.9  2  PF00583.19 Acetyltransferase (GNAT) family
     0.0039   16.9   0.0       0.01   15.5   0.0    1.7  1  PF13527.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.016   14.6   0.7      0.028   13.8   0.5    1.3  1  PF03194.10 LUC7 N_terminus


Domain annotation for each model (and alignments):
>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.004        14      34      66 ..      20      54 ..      17      68 .. 0.86
   2 !   25.1   0.0   3.7e-09   1.3e-05       6      74 ..     211     288 ..     206     289 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.004
   PF13508.1 34 vdpeyrgkGlG.skllnkl.keeygekpivllarp 66
                v +e+r kG G  +ll++l +ee+++k+i+    +
  MMETSP0890-20130614|3424_1 20 VEEEQREKGAGhGRLLSYLgEEEFQKKSIWTDPYE 54
                7799*******556***************987655 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 3.7e-09
   PF13508.1   6 lvleddgeivGflvl..redgetayiggvavdpeyrgkGlGskllnklkeey......gekpivlla.rparkkFYek 74 
                 l+l++d+e+v  l +    ++ ++ i  va++++yrg+G+G+ l++ l+  +        +pi+l + rp+  +FY+k
  MMETSP0890-20130614|3424_1 211 LGLYQDEELVTGLLFtgLGIDFSYEITMVATAKNYRGHGYGRILYESLLLALtfsipeDDNPIILVHpRPETTAFYLK 288
                 678999999964444243333378*******************999984333344664345666555588999***98 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   7.2e+03      33      44 ..      20      31 ..      17      46 .. 0.73
   2 !   17.4   0.0   8.8e-07     0.003      26      51 ..     234     259 ..     211     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.1
                ESGGGTTTT-HH CS
  PF00583.19 33 VspeyrgqGiGk 44
                V +e r +G G+
  MMETSP0890-20130614|3424_1 20 VEEEQREKGAGH 31
                677778888775 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 8.8e-07
                 EEEEEEEESGGGTTTT-HHHHHHHHH CS
  PF00583.19  26 ayieglaVspeyrgqGiGkaLleall 51 
                  +i ++a +++yrg+G+G+ L+e ll
  MMETSP0890-20130614|3424_1 234 YEITMVATAKNYRGHGYGRILYESLL 259
                 689*******************9875 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     3e-06      0.01      35     120 ..     201     286 ..     185     295 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3e-06
   PF13527.1  35 krnlleegrvlgaedngklvgqlallpfelnvpGkelpaagvtgVatapehrgrgl....lrkLlarlleemrergqplsilfP..ssypiY 120
                  + l+++++ lg++++++lv  l ++ +     G ++ +  +t+Vata+++rg+g+     ++Ll +l   + e++ p+++ +P    +++Y
  MMETSP0890-20130614|3424_1 201 VNHLYKPSQGLGLYQDEELVTGLLFTGL-----GIDFSY-EITMVATAKNYRGHGYgrilYESLLLALTFSIPEDDNPIILVHPrpETTAFY 286
                 5678888888888888888888888888.....666654.59**************555556666666667777777777777743334555 PP

>> PF03194.10  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   8.3e-06     0.028      82     213 ..      62     204 ..      50     220 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.3e-06
  PF03194.10  82 eealealevlvhdvdrkidkakqrleetqeeqtkeaaelk...aeelaeleeeinkllkeaeelgeegkvdeaqklmeeveelkekkeeleqq.........adeaknaapssaqateqklrvCeiCgafLsvlDadrRladHf 213
                 ++a + l+++ ++v r++++   r++e + +  +++  ++   +++ ++++e i+++l+e+e++ e+++   + k+++e+  + e  ++l++q          de   a    ++at+  lr+   C ++L  l ++++l +H+
  MMETSP0890-20130614|3424_1  62 KDAYDELDAMFKNVSRQTKLHLLRMNEFNLNSAAQEYLSHninNNTAESVAETIKRKLAEIEAASENQRPTRTRKTVSEAR-ITESSVKLKSQrkytqpvlhIDEDSIAFRYAKTATKLELRLISSCDTHLLNLAKKNKLVNHL 204
                 47888899999999999999888877766555444433223338889999999***********99877666666665543.2222222222212222333344444444555556888999*********9999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       825  (0.0603423); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.74
# Mc/sec: 1194.94
//
Query:       MMETSP0890-20130614|3429_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-21   73.8   0.1    1.1e-13   50.3   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
     0.0057   14.7   0.0     0.0057   14.7   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   1.6e-17   1.1e-13       2      39 .]       3      40 ..       2      40 .. 0.97
   2 !   22.0   0.0   1.4e-08   9.4e-05       2      24 ..      45      67 ..      44      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.6e-17
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                e++++l+gHt ++ c++fs dg++++++SrD+t ++Wd
  MMETSP0890-20130614|3429_1  3 ELLHILEGHTQFIDCCKFSKDGRRVVTASRDRTAKIWD 40
                689**********************************9 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.4e-08
                EEEEEEESSSSSEEEEEEESSST CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgp 24
                +++ tl+gHt+ V+++ fspdg+
  MMETSP0890-20130614|3429_1 45 TLLLTLSGHTDEVNACEFSPDGS 67
                7889*****************86 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.3e-07    0.0057     234     260 ..      27      53 ..      14      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.3e-07
   PF11715.3 234 vftlsrDgkLRvWnletgqclrttdil 260
                 v+t srD++ ++W+  tg++l t    
  MMETSP0890-20130614|3429_1  27 VVTASRDRTAKIWDAVTGTLLLTLSGH 53 
                 55******************6666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 250.53
//
Query:       MMETSP0890-20130614|3433_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-15   55.7   0.0    3.5e-15   55.7   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    2.1e-08   33.7   0.0    2.8e-08   33.2   0.0    1.2  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   5.1e-19   3.5e-15      15      68 ..       2      55 ..       1      57 [] 0.79

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 5.1e-19
   PF13306.1 15 tsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipss 68
                t++t+p s+t+I ++aF +c+sl+++tlp  +t+ig+ aF++c+sl ++t+p  
  MMETSP0890-20130614|3433_1  2 THLTLPASLTTIRNNAFDGCTSLTQLTLPAGITTIGDGAFEDCTSLIHLTLPAG 55
                567888888888888888888888888888888888888888888888888865 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.1e-12   2.8e-08       5      56 ..       3      52 ..       2      54 .. 0.96

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 4.1e-12
   PF13855.1  5 eLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                +L L  + l++i+++aF g+++L+ L L    +++i ++af++++sL +L L
  MMETSP0890-20130614|3433_1  3 HLTLPAS-LTTIRNNAFDGCTSLTQLTLP-AGITTIGDGAFEDCTSLIHLTL 52
                7899999.*********************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 206.96
//
Query:       MMETSP0890-20130614|3422_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-06   25.9   0.0      0.019   14.5   0.0    2.8  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.7e-05   23.5   0.1      0.059   13.2   0.0    3.1  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    8.9e-05   22.1   0.0       0.29   10.8   0.0    2.8  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00031       1.4       1      60 [.      99     157 ..      99     164 .. 0.78
   2 !   14.5   0.0   4.1e-06     0.019      19      62 ..     195     235 ..     183     241 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00031
                 EEEESSTTTSSHHHHHHHHCT.CTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFsk.fGpiesiklvrdetgrskgfafVeFeseedaekAlealn 60 
                 +++ n++pdv+e+ +k +    +G+ies+ +++        +  + F  +++  kAl++l+
  MMETSP0890-20130614|3422_1  99 VVIHNVNPDVSEDIIKGVAAAtCGEIESCIMINS--SGMWQTVLIHFSHRDAGYKALNNLQ 157
                 6899**************9999*********993..4444556666666666666666665 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.1e-06
                 HCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTE CS
  PF00076.17  19 FskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngk 62 
                 F+ f+  + i l   ++++  ++a+ eF ++eda++Ale++ ++
  MMETSP0890-20130614|3422_1 195 FRSFNVKRVIVL---SKKSGPPTAILEFNNPEDATAALENYAKE 235
                 444444433333...45799*******************98765 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.58   2.6e+03       5      16 ..      14      25 ..      13      26 .. 0.87
   2 !    6.7   0.0    0.0014       6.3       1      58 [.      99     155 ..      99     165 .. 0.77
   3 !   13.2   0.0   1.3e-05     0.059      15      59 ..     191     232 ..     175     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.58
   PF14259.1  5 glppsvteedlr 16
                 +p +++eed++
  MMETSP0890-20130614|3422_1 14 EIPDDMSEEDIK 25
                59********95 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0014
   PF14259.1   1 lyvrglppsvteedlreffspy.gkvegvriprnkdgrgrgf...AfvefeseedAqkalkk 58 
                 +++ +++p+v+e+ ++   +   g +e++ ++ +     +g     ++ f+++++  kal++
  MMETSP0890-20130614|3422_1  99 VVIHNVNPDVSEDIIKGVAAATcGEIESCIMINS-----SGMwqtVLIHFSHRDAGYKALNN 155
                 799*****************95499***999976.....33222277777776666666655 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.3e-05
   PF14259.1  15 lreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkl 59 
                 l++ f+++ +v++v +  +k   g+ +A++ef ++edA +al+++
  MMETSP0890-20130614|3422_1 191 LLQDFRSF-NVKRVIVLSKK--SGPPTAILEFNNPEDATAALENY 232
                 45556655.49999999875..6999****************996 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00046       2.1       6      43 ..     119     158 ..     117     162 .. 0.92
   2 ?    0.8   0.0     0.086   3.9e+02       5      19 ..     156     170 ..     153     174 .. 0.76
   3 !   10.8   0.0   6.4e-05      0.29      10      43 ..     199     234 ..     199     248 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00046
   PF13893.1   6 skfGkverikifrkkg..gqAfvefdtveaArkakeylng 43 
                 + +G++e++++  ++g   ++++ f+ ++a  ka+++l++
  MMETSP0890-20130614|3422_1 119 ATCGEIESCIMINSSGmwQTVLIHFSHRDAGYKALNNLQK 158
                 789************777******************9986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.086
   PF13893.1   5 fskfGkverikifrk 19 
                 ++k+Gkv r+   +k
  MMETSP0890-20130614|3422_1 156 LQKYGKVSRMSPGKK 170
                 89*****99865555 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 6.4e-05
   PF13893.1  10 kverikifrkk..ggqAfvefdtveaArkakeylng 43 
                 +v+r++++ kk  + +A  ef ++e+A  a+e++ +
  MMETSP0890-20130614|3422_1 199 NVKRVIVLSKKsgPPTAILEFNNPEDATAALENYAK 234
                 79998887777777******************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       985  (0.0720451); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:00.74
# Mc/sec: 1700.12
//
Query:       MMETSP0890-20130614|3441_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-14   52.1   0.4    4.2e-06   26.3   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.01   13.9   0.0       0.01   13.9   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160
      0.076   12.6   0.0       0.14   11.7   0.0    1.5  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   9.1e-10   4.2e-06      17      39 .]       2      24 ..       1      24 [. 0.97
   2 !   24.5   0.0   3.3e-09   1.5e-05       1      23 [.      28      50 ..      28      51 .] 0.91

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 9.1e-10
                EEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 17 vafspdgpllasgSrDgtirlWd 39
                ++fs dg++++++S D+t ++Wd
  MMETSP0890-20130614|3441_1  2 CKFSKDGRRVVTASVDNTAKIWD 24
                89********************9 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 3.3e-09
                TEEEEEEESSSSSEEEEEEESSS CS
  PF00400.27  1 geckatlrgHtspVtcvafspdg 23
                g+++ tlrgHt+ V++++fspdg
  MMETSP0890-20130614|3441_1 28 GTLLLTLRGHTDEVNACDFSPDG 50
                57889****************97 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-06      0.01     234     260 ..      11      37 ..       3      51 .] 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-06
   PF11715.3 234 vftlsrDgkLRvWnletgqclrttdil 260
                 v+t s+D++ ++W+  tg++l t    
  MMETSP0890-20130614|3441_1  11 VVTASVDNTAKIWDAVTGTLLLTLRGH 37 
                 55******************6655444 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     3e-05      0.14     149     184 ..       2      32 ..       1      42 [. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3e-05
   PF08662.6 149 vewspdgryvlTattsprlrvdngfkiws.ysGklly 184
                 +++s dgr v+Ta+      vdn+ kiw  ++G+ll 
  MMETSP0890-20130614|3441_1   2 CKFSKDGRRVVTAS------VDNTAKIWDaVTGTLLL 32 
                 99*********996......89******637898875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 182.41
//
Query:       MMETSP0890-20130614|3442_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-22   77.1   0.0      1e-21   76.7   0.0    1.2  1  PF02410.10 Oligomerisation domain


Domain annotation for each model (and alignments):
>> PF02410.10  Oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   7.5e-26     1e-21       2     100 .]      23     121 ..      22     121 .. 0.97

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 7.5e-26
                 HHHHHHHHHHTT-EEEEEEE----B----EEEEEE---HHHHHHHHHHHHHHHHH.------EEE---S-SEEEEE---EEEEEE-TT-CCCTSTTT-- CS
  PF02410.10   2 lelvvealeekkaedivvldvsekssiadyfviatgkserhvkaladevekelekekgdellkvegldeseWvllDlgdivvhifteeaReeynLEelw 100
                 ++ +++a++ +k  + v+ +v+++++++ ++++++g+s+ + +a+a +v +e+e++ g+ + ++eg  ++ W+++D+gd+++h++t+ +Re+y+L+ lw
  MMETSP0890-20130614|3442_1  23 VKCAAKAADMRKSSETVAYHVASVTDMTCFILLTNGRSKPQNEAIAAAVVDEVEEDIGRLPERIEGGADGGWTVIDYGDVIIHVMTPLSREYYQLDTLW 121
                 577899***********************************************9999****************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 711.65
//
Query:       MMETSP0890-20130614|3444_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0099   14.6   1.5      0.012   14.3   1.0    1.1  1  PF07946.9  Protein of unknown function (DUF1682)
  ------ inclusion threshold ------
      0.021   14.4   4.0      0.015   14.9   1.8    1.4  2  PF07516.8  SecA Wing and Scaffold domain
      0.055   12.8   0.0      0.071   12.4   0.0    1.3  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PF07946.9  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.0   2.6e-06     0.012     161     282 ..      22     138 ..       9     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.6e-06
   PF07946.9 161 eslavmsesnevtdlllt.pkliealeka.akyleyliitDqplekpekeeettkkkrlllslnlpkskedleelkkllklvlyliDklk.klelreevlkkvkklReevekkllkakeeerqEe 282
                  +++++ + + v  +llt ++l+ + ++a   +++++i++D  +       ++t   +l   l++ +++      ++l +++l+ + +++ +l+++++ +++ +++R++ve+++ k  e  + Ee
  MMETSP0890-20130614|3444_1  22 SMYKFIWNVERVYAKLLTpTNLMAYGSRAlIIKIDSMILSDEAIMSLF---DETIPDTLMHDLRAKDNET-----RQLAHYILQNFHRMRgQLSIEQDERQREEEVRKQVEDEFEKLYETDEDEE 138
                 577888888888889999666777777665788999999999998866...7778889999999888766.....99********99999999************************99999887 PP

>> PF07516.8  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.52   2.4e+03     183     204 ..      15      36 ..      11      46 .. 0.74
   2 ?   14.9   1.8   3.3e-06     0.015      44     135 ..      46     136 ..      36     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.52
                 HHHHHH---HHHHHHHHHHHHH CS
   PF07516.8 183 lveYkkeafelFeemleaikee 204
                 +veY  e++  F+  +e++  +
  MMETSP0890-20130614|3444_1  15 FVEYASESMYKFIWNVERVYAK 36 
                 5788888888888777776655 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.3e-06
                 HHHHHHHHT-S....THHHHHHHHHHHHHHHHHHTS-TTSSCTCSSHHHHHHHHHHHTS.----CCCCS-.----HHCCHHHHHHHHHHHHHHHHH CS
   PF07516.8  44 YkqRreiLeged...lkeqilemiedviediveeyaeekkkeeewdlegleeelksllg.lelsieeeeekeklkeeelkeklleeaekayeekee 135
                 Y  R  i++ ++    +e i+++ +++i d++ + +  k    + ++++l++++ +++  +  +++ e++ e+++eee+++++ +e+ek ye  e+
  MMETSP0890-20130614|3444_1  46 YGSRALIIKIDSmilSDEAIMSLFDETIPDTLMHDLRAK----DNETRQLAHYILQNFHrMRGQLSIEQD-ERQREEEVRKQVEDEFEKLYETDED 136
                 778888888887554456666777777777766666555....677899999999999867777776666.7789999*************87544 PP

>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05     0.071       4      47 ..      51     100 ..      47     136 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
                 EEE-----HHHHHHHHHHH......HHHHHHHHCTT---------B--SS CS
  PF00454.22   4 fifkggadlrqdervlqlv......rlfnkllsgegalrelaaYlvipla 47 
                 +i+k ++  ++de +++l+       l+++l  +++++r+la+Y++ +  
  MMETSP0890-20130614|3444_1  51 LIIKIDSMILSDEAIMSLFdetipdTLMHDLRAKDNETRQLAHYILQNFH 100
                 6889999999***********************************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1052  (0.0769456); expected 273.4 (0.02)
Passed bias filter:                      680  (0.0497367); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.44s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 555.35
//
Query:       MMETSP0890-20130614|3449_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0002   22.1   0.1    0.00034   21.4   0.1    1.4  1  PF13469.1  Sulfotransferase family
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.18   11.0   0.0    1.4  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   4.9e-08   0.00034       3     155 ..      49     171 ..      47     186 .] 0.60

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.9e-08
   PF13469.1   3 vfilGlpRSGttlLaraLlalhpaelgllapqapaladapkglaera........allpllradll.salrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahl............lfpd.rfvvllRdPlavlasllrlllasllrr 155
                 ++ +G+++SG+t+L+++ +                 + + +  +           + l++l++    s++r+++++++                                     s++ r+v+++k+p+              l+++ +++++lR Pla  asl+ +  a   + 
  MMETSP0890-20130614|3449_1  49 ILGIGPAKSGSTHLSQLVM-----------------DEGIAIVGNATlggrtccgPELYWLLDEKEmSRGRHSYSKYFK-----------------------------------TSPDFRTVFFEKTPHYSadmrvpyrarvfLGSQvKLIFTLRPPLALDASLYMHREAYTKKS 171
                 6789***********6666.................3333333333333333333333333333333555555555533...................................6666777777777777777777777799*************99987777444443332222 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.7e-05      0.18       2     139 ..      47     178 ..      46     185 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.7e-05
                 TSEEEEESTT---HHHHHHHHH.............HHTCCET.......TGGG-TGCCT-.HHHSEETT-TCCGSG.CCGCCCCCCHHGG-TTHHHHHCHCTSS.EEE..E...CCCS.....CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT---HHH CS
  PF00685.22   2 ddvlivtypKSGttwlqellsl.............itsegdf.......ekaeepalfna.rdrspfLelydlyfp.nslkpqehlsyshvaekvvrlralesprllk..tHlplkll....pkslldknlKiiylvRnpkdvavSryhfsrslkllkepetpfee 139
                 +d+l +++ KSG+t l++l+               +                +e+++    +++s++ +++ ++   ++                            +  +H ++++      + +l +++K+i  +R p +  +S y +  + ++ + pe  ++e
  MMETSP0890-20130614|3449_1  47 PDILGIGPAKSGSTHLSQLVMDegiaivgnatlggR-----TccgpelyWLLDEKEMSRGrHSYSKYFKTSPDFRTvFF----------------------------EktPHYSADMRvpyrARVFLGSQVKLIFTLRPPLALDASLYMHREAYTKKSYPEW-VQE 178
                 689999**************9955554444333331.....12222234444444444444555555555322222222............................1233333333200002347789999999999999999999999877776666665.455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.75
# Mc/sec: 594.30
//
Query:       MMETSP0890-20130614|3461_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-14   53.3   0.2      7e-14   52.2   0.1    1.6  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.028   14.8   0.4      0.069   13.6   0.3    1.7  1  PF07398.6 MDMPI C-terminal domain
      0.029   14.5   0.0      0.065   13.4   0.0    1.6  1  PF13759.1 Putative 2OG-Fe(II) oxygenase
      0.068   11.5   0.0       0.27    9.5   0.0    1.8  2  PF07350.7 Protein of unknown function (DUF1479)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1     2e-17     7e-14       2     209 ..      34     243 ..      33     245 .. 0.67

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 2e-17
                 HH---EEE-----HHHHHHHHHH---T....HHHHHT-------EE----B-----BSGGTEEEE---HHH......................HHHHHHHHH----SEEE...EEEEE..E---S-----E.EEE-GGGTS-........EE-..---EE-EEEESS-B-S----EEEE---------.......................-EEE----..............----....... CS
   PF05721.8   2 eedGylviegflsaeevealraeieal....ldralesgdkidfffeekaaadedglleksinkvghflhp......................rkvadlvrailgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflp........tdp..eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                 +e+Gy+ i+++++ e +++++a+i+ +    ++r le+  +++    e  + + ++++     +v++++h                       + ++   ra                   fk+p+   + +p   D+  ++        +d+   + +v+  ++led  ++ G+lr++PGSH++  +     l++ +++           ++av+v+  aG++vl+ + +lHg g+N+ +k+R
  MMETSP0890-20130614|3461_1  34 REQGYVTIQDVVPLELCREIAATIRSFvgadDERPLETWYSNTLDIYEARTPNGKKPHHGPAGMVQMYHHAslwklrqlpnihacfadaygteKLWVTTDRA------------------HFKPPQN--SKTPIWNDAGPVHgglhwdtsVDDlpVPYAVQGVVYLEDTWNDMGPLRVVPGSHTRIAD-----LRDAPNKYI---------DSAVSVDGTAGTLVLWLSGVLHGPGQNLGTKPR 243
                 89*************************999855555554444433333333333444448888888888887776544422222222223333333333333..................3444421..11344444444444444333322244799***************************444.....677777777.........9******************************99 PP

>> PF07398.6  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3     2e-05     0.069      34      63 ..     189     229 ..     147     229 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
                 EEE------...................-EEE------HHHH-- CS
   PF07398.6  34 vhlhatdga.....alsad.........atvrGpaadlllaltG 63 
                 +++ ++ ++     +   d         ++v+G+a+ l+l+l+G
  MMETSP0890-20130614|3461_1 189 LRVVPGSHTriadlR---DapnkyidsaVSVDGTAGTLVLWLSG 229
                 444444444554443...2445888888**************98 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.065      56      97 ..     204     245 ..     172     248 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-05
   PF13759.1  56 eeakeplqplvvvkpkeGdlvlFpSslrHsvepneseeeRis 97 
                 +  ++++++ v v+  +G+lvl+ S + H+  +n ++++R+s
  MMETSP0890-20130614|3461_1 204 DAPNKYIDSAVSVDGTAGTLVLWLSGVLHGPGQNLGTKPRVS 245
                 223567799999*****************************9 PP

>> PF07350.7  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   7.8e-05      0.27      59     137 ..      21     119 ..       4     144 .. 0.76
   2 ?   -1.3   0.0      0.15   5.2e+02     237     260 ..     173     196 ..     172     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 7.8e-05
   PF07350.7  59 eeeavsaelsaeikrrGvavirgvvpeeeaeewkeeieeYlekn....................ddfkglpkekpqiyelyWskaqvkaRahpnvlaaq 137
                 e +  s+e+  +++++G + i+ vvp e  +e+   i++++ +                     ++ k++ +    + ++y   +  k R+ pn+ a +
  MMETSP0890-20130614|3461_1  21 EPKYLSKEQYTHLREQGYVTIQDVVPLELCREIAATIRSFVGADderpletwysntldiyeartPNGKKPHHGPAGMVQMYHHASLWKLRQLPNIHACF 119
                 5556689999*******************************9997788888888888887777655666666777778888888888888888877665 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.15
   PF07350.7 237 fQGwlalsdvkpgeGtlrvlPlvk 260
                  QG++ l d+ ++ G lrv+P  +
  MMETSP0890-20130614|3461_1 173 VQGVVYLEDTWNDMGPLRVVPGSH 196
                 5********************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:01.11
# Mc/sec: 749.13
//
Query:       MMETSP0890-20130614|3464_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-32  110.4   0.4      1e-20   73.2   0.0    1.9  2  PF13424.1  Tetratricopeptide repeat
    1.6e-24   84.8   2.5    2.5e-11   42.9   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    7.5e-11   41.0   3.1      2e-05   23.8   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    4.8e-10   38.8   1.6    0.00058   19.3   0.1    2.0  2  PF13414.1  TPR repeat
    7.8e-10   37.7   1.4    0.00059   19.4   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    9.8e-10   37.3   0.1    0.00087   18.7   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
      7e-07   29.2   0.5      0.022   15.2   0.1    2.2  2  PF13428.1  Tetratricopeptide repeat
    7.4e-06   26.3   0.2    1.2e-05   25.6   0.1    1.4  1  PF13432.1  Tetratricopeptide repeat
    0.00026   20.4   1.5       0.44   10.3   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
     0.0075   16.2   1.3        2.3    8.5   0.1    3.4  3  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.023   14.6   0.0    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.083   13.2   0.3         14    6.2   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   9.1e-24     1e-20       1      78 []       7      85 ..       7      85 .. 0.98
   2 !   41.3   0.0   8.4e-14   9.6e-11       1      47 [.      49      96 ..      49      97 .. 0.97

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 9.1e-24
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hp++at l+ la +lr + +ydeA  l+e+a+e+  ++lg++hp++a +l nla l++++ +ydeA+++ e+A++i ek
  MMETSP0890-20130614|3464_1  7 HPNVATGLSGLAALLRDQAKYDEAKPLCERAIEIdEKTLGPNHPQVAASLDNLAGLLEKQAKYDEAKPLCERAIKISEK 85
                99**************************************************************************986 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 8.4e-14
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtar 47
                hp++a++l+nla++l+++ +ydeA  l+e+a+++  ++lg++hp +a+
  MMETSP0890-20130614|3464_1 49 HPQVAASLDNLAGLLEKQAKYDEAKPLCERAIKIsEKTLGPNHPAVAT 96
                899*****************************************9985 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4      0.12   1.3e+02      35      42 .]       2       9 ..       1       9 [. 0.87
   2 !   38.2   0.0   6.6e-13   7.5e-10       1      42 []      10      51 ..      10      51 .. 0.95
   3 !   42.9   0.0   2.2e-14   2.5e-11       1      41 [.      52      92 ..      52      93 .. 0.98

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.12
   PF13374.1 35 llGddHPd 42
                ++G++HP+
  MMETSP0890-20130614|3464_1  2 VHGPNHPN 9 
                79*****5 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 6.6e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ l+ LA +lr++ +y+eA +l e+a +i ++ lG++HP+
  MMETSP0890-20130614|3464_1 10 VATGLSGLAALLRDQAKYDEAKPLCERAIEIDEKTLGPNHPQ 51
                6778999**********************************5 PP

  == domain 3    score: 42.9 bits;  conditional E-value: 2.2e-14
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
                +aa+l nLA +l ++ +y+eA +l e+a  i ++ lG++HP
  MMETSP0890-20130614|3464_1 52 VAASLDNLAGLLEKQAKYDEAKPLCERAIKISEKTLGPNHP 92
                79**************************************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   1.7e-08     2e-05       3      32 ..      13      42 ..      11      43 .. 0.92
   2 !   17.7   0.3   1.5e-06    0.0017       6      31 ..      58      83 ..      58      85 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.7e-08
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALelnP 32
                 l +l+++++ + kydeA   +e+A+e+++
  MMETSP0890-20130614|3464_1 13 GLSGLAALLRDQAKYDEAKPLCERAIEIDE 42
                6899************************97 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.5e-06
                HHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  6 nlGnaylklgkydeAleyyekALeln 31
                nl+ ++ k+ kydeA   +e+A+++ 
  MMETSP0890-20130614|3464_1 58 NLAGLLEKQAKYDEAKPLCERAIKIS 83
                889999******************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   5.1e-07   0.00058      34      68 ..       8      41 ..       4      42 .. 0.86
   2 !   17.9   0.1   1.4e-06    0.0015       2      37 ..      52      92 ..      51      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.1e-07
   PF13414.1 34 pnnaelyynlAlaylklgkdyeeAledyekAleld 68
                pn a  +++lA++++ +  +y+eA   +e+A+e+d
  MMETSP0890-20130614|3464_1  8 PNVATGLSGLAALLRDQA-KYDEAKPLCERAIEID 41
                55566************9.6*************99 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.4e-06
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnna 37
                +A +l +l+  l k+ +ydeA  ++e+A++++     pn++
  MMETSP0890-20130614|3464_1 52 VAASLDNLAGLLEKQAKYDEAKPLCERAIKISektlgPNHP 92
                68899999*********************986555558887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   5.2e-07   0.00059       2      32 ..      12      42 ..      11      44 .. 0.92
   2 !   17.9   0.1   1.6e-06    0.0018       2      32 ..      54      84 ..      53      86 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.2e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldP 32
                 +l  l+ +++ + +y+eA+ ++e+A+e+d 
  MMETSP0890-20130614|3464_1 12 TGLSGLAALLRDQAKYDEAKPLCERAIEIDE 42
                57889************************97 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.6e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldP 32
                  l nl+ +++k+ +y+eA+ ++e+A+++  
  MMETSP0890-20130614|3464_1 54 ASLDNLAGLLEKQAKYDEAKPLCERAIKISE 84
                67889***********************975 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.4e-06    0.0039       2      33 ..      14      45 ..      14      48 .. 0.85
   2 !   18.7   0.0   7.7e-07   0.00087       1      30 [.      55      84 ..      55      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.4e-06
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpl 33
                l+ La l +++ +y++A  l+era+++++  l
  MMETSP0890-20130614|3464_1 14 LSGLAALLRDQAKYDEAKPLCERAIEIDEKTL 45
                678********************888776655 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 7.7e-07
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                +l+nLa l +++ +y++A  l+era+++ +
  MMETSP0890-20130614|3464_1 55 SLDNLAGLLEKQAKYDEAKPLCERAIKISE 84
                799*********************666554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.9e-05     0.022       4      33 ..      14      43 ..      11      56 .. 0.79
   2 !   12.8   0.0   0.00011      0.13       4      37 ..      56      94 ..      52      97 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-05
   PF13428.1  4 llalarallalGdpdeAiallrralalaPd 33
                l  la++l+++  +deA  l++ra++ + +
  MMETSP0890-20130614|3464_1 14 LSGLAALLRDQAKYDEAKPLCERAIEIDEK 43
                678**********************95543 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00011
   PF13428.1  4 llalarallalGdpdeAiallrrala.....laPddaea 37
                l  la +l+ +  +deA  l++ra++     l+P+++++
  MMETSP0890-20130614|3464_1 56 LDNLAGLLEKQAKYDEAKPLCERAIKisektLGPNHPAV 94
                6789*********************95555556666665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.1e-08   1.2e-05       3      59 ..      17      86 ..      15      92 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.1e-08
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....a 59
                lA +l ++ +ydeA ++ e+a++ +        P+ a  l +la +l ++ ++deA  l ++a+      
  MMETSP0890-20130614|3464_1 17 LAALLRDQAKYDEAKPLCERAIEIDektlgpnhPQVAASLDNLAGLLEKQAKYDEAKPLCERAIkisekT 86
                799************************************************************9555554 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00038      0.44       8      32 ..      18      42 ..      13      44 .. 0.89
   2 !    9.4   0.2   0.00073      0.84       6      32 ..      58      84 ..      53      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00038
                --HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  8 GdiYrqlGdydkAkeylekalelkp 32
                + ++r+  +yd+Ak   e+a+e++ 
  MMETSP0890-20130614|3464_1 18 AALLRDQAKYDEAKPLCERAIEIDE 42
                66889999***************96 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00073
                T---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  6 nlGdiYrqlGdydkAkeylekalelkp 32
                nl+ ++++  +yd+Ak   e+a++++ 
  MMETSP0890-20130614|3464_1 58 NLAGLLEKQAKYDEAKPLCERAIKISE 84
                7888999999**************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.071        80       9      33 ..       7      31 ..       5      32 .. 0.85
   2 !    8.5   0.1     0.002       2.3       1      33 [.      33      73 ..      33      74 .. 0.82
   3 ?    1.0   0.0      0.49   5.6e+02       1       9 [.      75      83 ..      75      95 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.071
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +Pn a  +  LA ll ++ +++eA+
  MMETSP0890-20130614|3464_1  7 HPNVATGLSGLAALLRDQAKYDEAK 31
                67777778899***********996 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.002
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                l+e+a+e+d     Pn+   a ++ nLA ll ++ +++eA+
  MMETSP0890-20130614|3464_1 33 LCERAIEIDektlgPNHpqvAASLDNLAGLLEKQAKYDEAK 73
                699*****999999888555666669999999999999996 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.49
   PF13431.1  1 lyekaleld 9 
                l+e+a++++
  MMETSP0890-20130614|3464_1 75 LCERAIKIS 83
                699***987 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.023       1      57 [.      23      86 ..      17      96 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.1e-05
                HTT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
   PF12895.2  1 eqhnyknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk.leldsss 57
                +q  y++A  l+e++++ + k      p  +a+l +lA  l ++++y++A  l+++  ++++++
  MMETSP0890-20130614|3464_1 23 DQAKYDEAKPLCERAIEIDEKtlgpnHPqVAASLDNLAGLLEKQAKYDEAKPLCERaIKISEKT 86
                57899*************9999987533577788889999999999988877776663333333 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.027        30       6      28 ..      18      39 ..      13      41 .. 0.76
   2 ?    6.2   0.0     0.012        14       5      28 ..      58      81 ..      54      83 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.027
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                +al+++++ ++deA+ + er i+
  MMETSP0890-20130614|3464_1 18 AALLRDQA-KYDEAKPLCERAIE 39
                34555556.******99999886 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                +la +++k+ ++deA+ + er ik
  MMETSP0890-20130614|3464_1 58 NLAGLLEKQAKYDEAKPLCERAIK 81
                6777778866******99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 366.94
//
Query:       MMETSP0890-20130614|3466_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21   11.0   8.6       0.21   11.0   5.9    1.1  1  PF05764.8 YL1 nuclear protein
       0.26   11.3   9.2       0.31   11.0   6.4    1.2  1  PF12496.3 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
        1.7    6.3   7.3        1.7    6.3   5.1    1.1  1  PF04147.7 Nop14-like family


Domain annotation for each model (and alignments):
>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.9   4.6e-05      0.21      46     115 ..       1      67 [.       1      99 [] 0.54

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.6e-05
   PF05764.8  46 DeefeeeeeeeeeeeDsdfddseddeeesddeeegekelekeekekkkkrkkkkaykeplkkkkkkkkka 115
                 D++f +++ ++    D d+d ++ d+ ++dd+++     + ++k  +   ++ + + +p++  +k++++ 
  MMETSP0890-20130614|3466_1   1 DDDFDMDDMDDSAD-DFDMDVDSADDDDDDDDDDYYYYHHPQKK--RAAPATHERQAAPVVQWQKSEYEL 67 
                 89999877666664.88898888877777666666662233322..222234444444544333333332 PP

>> PF12496.3  Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.4   6.8e-05      0.31      26      77 ..       7      54 ..       1      78 [. 0.60

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.8e-05
   PF12496.3 26 ddvsessvddldlslddldtpddedsldvegeleweddtpkagaasesaees 77
                dd+++s+ dd d+++d  d +dd+d++d+     +++++ k +a +++++++
  MMETSP0890-20130614|3466_1  7 DDMDDSA-DDFDMDVDSADDDDDDDDDDYYY---YHHPQKKRAAPATHERQA 54
                6676666.56********9999999999977...333333333322222222 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.1   0.00036       1.7     349     399 ..       2      51 ..       1      84 [. 0.50

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00036
   PF04147.7 349 deeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakk 399
                 d+++ d d +++++d d d ++ d++d+++dd+  +    ++++++ ++++
  MMETSP0890-20130614|3466_1   2 DDFDMD-DMDDSADDFDMDVDSADDDDDDDDDDYYYYHHPQKKRAAPATHE 51 
                 344433.33345666666665555555444444444333332222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 395.40
//
Query:       MMETSP0890-20130614|3462_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-47  157.6   4.5    7.6e-13   47.6   0.0    5.7  6  PF13475.1  Domain of unknown function (DUF4116)
     0.0032   16.5   0.5     0.0052   15.8   0.3    1.3  1  PF01406.14 tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.019   14.3   0.1          7    6.1   0.0    4.2  5  PF05344.6  Domain of Unknown Function (DUF746)
       0.32    9.5   6.4       0.44    9.0   4.4    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        1.7    8.0   8.7        3.8    6.9   6.0    1.5  1  PF03066.10 Nucleoplasmin
        2.7    8.5  14.2        6.1    7.4   9.9    1.6  1  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
          7    6.8  15.0         54    3.9   8.7    2.6  2  PF09026.5  Centromere protein B dimerisation domain
        8.8    3.8  11.0         11    3.4   7.6    1.1  1  PF04931.8  DNA polymerase phi


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.7   6.3e+03      41      49 .]     154     162 ..     150     162 .. 0.60
   2 ?    1.6   0.0       0.1   1.7e+02      21      37 ..     178     194 ..     170     208 .. 0.71
   3 !   30.5   0.0   9.5e-11   1.6e-07      15      49 .]     209     243 ..     195     243 .. 0.93
   4 !   35.4   0.0   2.8e-12   4.8e-09       1      45 [.     245     289 ..     245     294 .. 0.95
   5 !   39.5   0.0   1.5e-13   2.6e-10       4      49 .]     297     342 ..     294     342 .. 0.97
   6 !   47.6   0.0   4.5e-16   7.6e-13       1      44 [.     344     387 ..     344     392 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.7
   PF13475.1  41 lsyaseeLr 49 
                 ++ya ee+r
  MMETSP0890-20130614|3462_1 154 FDYAKEEIR 162
                 566666665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.1
   PF13475.1  21 eeLknDkeivlkAvkqn 37 
                 ++  n+ke+ ++ + ++
  MMETSP0890-20130614|3462_1 178 SNYLNNKEFWIYFLLRD 194
                 4589*****99987754 PP

  == domain 3    score: 30.5 bits;  conditional E-value: 9.5e-11
   PF13475.1  15 alkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 +l+++ +eLk+Dk+++l+Avk +g+al+ya + L+
  MMETSP0890-20130614|3462_1 209 VLRFAADELKSDKDVILAAVKYCGDALYYAADKLK 243
                 6899**************************98886 PP

  == domain 4    score: 35.4 bits;  conditional E-value: 2.8e-12
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyas 45 
                 D +++  av++ng++l+++ +eLk D eiv+ Av+++ +al+ a+
  MMETSP0890-20130614|3462_1 245 DPDVIRSAVRNNGYSLRFAADELKLDPEIVKIAVQSDEIALKCAD 289
                 89**************************************99876 PP

  == domain 5    score: 39.5 bits;  conditional E-value: 1.5e-13
   PF13475.1   4 ivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 iv+ av+++++al+y+ +eLk + eivl+Av++n  al ya +eL+
  MMETSP0890-20130614|3462_1 297 IVMTAVQSHPFALQYAADELKLNHEIVLQAVRRNAAALIYAADELK 342
                 8******************************************997 PP

  == domain 6    score: 47.6 bits;  conditional E-value: 4.5e-16
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsya 44 
                 Dr+++  av+ +g alky+s+eLk+D++iv +Av q+ +al++a
  MMETSP0890-20130614|3462_1 344 DRDFMIRAVQEHGVALKYASDELKSDRDIVRAAVAQSRDALYFA 387
                 9*****************************************98 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   3.1e-06    0.0052      35     156 ..     247     372 ..     231     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHH----EEEEE-BB--SHHHHHHHHH----HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHH---E...EE---..--EEE-GGG-TT----S---HHHHH----- CS
  PF01406.14  35 DvlrrilqalgYdvqfvqnvtDidDkiikrarqeeksvkelaekfieeykkdleaLnvlkptletrvtekideiielvekliekgya...Yvssd..gdvyfdvsslkeYgklskrnleeleagaeg 156
                 Dv+r  +++ gY ++f  +   +d  i+k a q+++   + a++f ++y   ++a++ ++  + + ++++++   e+v + + ++ a   Y++++   d  f  ++ +e+g   k  ++el++ ++ 
  MMETSP0890-20130614|3462_1 247 DVIRSAVRNNGYSLRFAADELKLDPEIVKIAVQSDEIALKCADEFKSDYGIVMTAVQSHP-FALQYAADELKLNHEIVLQAVRRNAAaliYAADElkADRDFMIRAVQEHGVALKYASDELKSDRDI 372
                 9*******************************************************9887.555667788888899999999988774556666677888899999999999888888888877665 PP

>> PF05344.6  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   2.6e+03      17      34 ..     211     228 ..     206     230 .. 0.78
   2 ?    0.6   0.0      0.21   3.6e+02      19      35 ..     238     254 ..     234     256 .. 0.89
   3 ?   -0.4   0.0      0.44   7.5e+02      16      34 ..     260     278 ..     256     280 .. 0.81
   4 ?    6.1   0.0    0.0041         7      11      36 ..     304     329 ..     300     334 .. 0.92
   5 ?   -0.0   0.0      0.34   5.7e+02      16      39 ..     359     382 ..     354     385 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.5
   PF05344.6  17 aeaadqlgtdegiiakwv 34 
                   aad l++d++ i   v
  MMETSP0890-20130614|3462_1 211 RFAADELKSDKDVILAAV 228
                 55999*****99997766 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.21
   PF05344.6  19 aadqlgtdegiiakwvr 35 
                 aad l++d++ i+  vr
  MMETSP0890-20130614|3462_1 238 AADKLKSDPDVIRSAVR 254
                 9************9997 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.44
   PF05344.6  16 laeaadqlgtdegiiakwv 34 
                 l  aad l++d++i++  v
  MMETSP0890-20130614|3462_1 260 LRFAADELKLDPEIVKIAV 278
                 56699********998665 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0041
   PF05344.6  11 sqplslaeaadqlgtdegiiakwvre 36 
                 s+p  l  aad l++ ++i+ + vr+
  MMETSP0890-20130614|3462_1 304 SHPFALQYAADELKLNHEIVLQAVRR 329
                 89999*****************9986 PP

  == domain 5    score: -0.0 bits;  conditional E-value: 0.34
   PF05344.6  16 laeaadqlgtdegiiakwvreFre 39 
                 l  a+d l++d +i++  v++ r+
  MMETSP0890-20130614|3462_1 359 LKYASDELKSDRDIVRAAVAQSRD 382
                 56699***********99988775 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.4   0.00026      0.44      54     115 ..      58     121 ..      18     142 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00026
   PF10446.4  54 dededdeeddddeDeddddddd.deDdedde.lddddstladaseaddGnktdneagfadSdDe 115
                 ++d +deedd++eDe+++++    ++de +  + +   +  +++e+dd  + ++ + f   dDe
  MMETSP0890-20130614|3462_1  58 QDDAEDEEDDEEEDEEKNEEHRgLNNDELNWiHGKRRRKFLQFIEQDDAEEMNESIMFVLGDDE 121
                 4455555555555555554443133333333467777788888888999888888888888887 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.0    0.0022       3.8     117     140 ..      32      77 ..      16      85 .. 0.53

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0022
                 ........................----XXXXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e.......................eddeedeeeeddeedddeeeeee 140
                 e                         +++d e+e+d+e++dee++ee
  MMETSP0890-20130614|3462_1  32 EncglndyelnwihgkrrpkfypcI-EQDDAEDEEDDEEEDEEKNEE 77 
                 3455555666666666666666642.333333333333333333333 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.9    0.0036       6.1       8      58 ..      58     112 ..      56     120 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0036
   PF11942.3   8 vddeeeEee.eeedeeeelseeaefieea...eddrrhreldrrrekeeeedaee 58 
                  dd e+Ee+ eeedee+ +++ + +++e      +rr+++l+  +++++ee++e 
  MMETSP0890-20130614|3462_1  58 QDDAEDEEDdEEEDEEKNEEHRGLNNDELnwiHGKRRRKFLQFIEQDDAEEMNES 112
                 5666666664444444444444444444478756666666666666666666655 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   8.7     0.032        54      14      40 ..      59      85 ..      55      90 .. 0.62
   2 ?    2.0   0.0      0.13   2.2e+02      37      89 ..     279     332 ..     266     338 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.032
   PF09026.5 14 sdseeeeedeeedeededeedeeedde 40
                 d+e+ee+deeedee+++e+   ++de
  MMETSP0890-20130614|3462_1 59 DDAEDEEDDEEEDEEKNEEHRGLNNDE 85
                456666666666666666666555555 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.13
   PF09026.5  37 eddevpvpsfgeamayfamvkryltsspiddrvqshilhlehdlv.hvtrknha 89 
                 ++de+ +    e  + + +v   + s p   +  +  l+l+h++v +  r+n a
  MMETSP0890-20130614|3462_1 279 QSDEIALKCADEFKSDYGIVMTAVQSHPFALQYAADELKLNHEIVlQAVRRNAA 332
                 57888899999999999999999********************98345677765 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   7.6    0.0067        11     668     738 ..      58     119 ..      16     126 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0067
   PF04931.8 668 iedseseseddsEdgeedEkedddeavedvvnidkevrralvkvLeaadaldggdsedeeemdDEammrL.D 738
                  +d+e+e++d+ E++ee  +e +   ++++  i  + rr+  +           + +d eem++  m+ L D
  MMETSP0890-20130614|3462_1  58 QDDAEDEEDDE-EEDEEKNEEHRGLNNDELNWIHGKRRRKFLQ---------FIEQDDAEEMNESIMFVLgD 119
                 34444444444.4444445666677777777776565665444.........34889999999999998844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       762  (0.0557343); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.40s 00:00:01.23 Elapsed: 00:00:00.72
# Mc/sec: 1318.00
//
Query:       MMETSP0890-20130614|3469_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   15.1   0.2      0.034   14.2   0.2    1.6  1  PF00169.24 PH domain
      0.048   13.1   0.1      0.076   12.4   0.0    1.2  1  PF03482.8  sic protein


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2     5e-06     0.034      11     103 ..      24     130 ..       1     131 [. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5e-06
                 E..TSSSCEEEEEEEEET..TEEEEESSSST.....TCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT.......CEEEEEESSHHHHHHHHHHHHHHH CS
  PF00169.24  11 s..ellktwkkryfvLts..nyLlyfksskk.....ksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv.......esyllsaeseeerkrWvqalknll 103
                 s  +++++w+ r+f L    + L yf++ +         ++p+   + ++ +++   +++  +  ++ +yfe+t +           + l a+s+ e ++W+ +l+ +l
  MMETSP0890-20130614|3469_1  24 SitGGRRNWQARWFSLDLdrGELRYFEDASMsvqkgLVLLTPETELQFDTPELRGKHAKE--SATDELHYFELTKTRDekgalrdLPFQLRANSAAEHEQWCFSLQFSL 130
                 1558999********987779********9855555444444444444444444333333..4899********99999*****99****************9998765 PP

>> PF03482.8  sic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.1e-05     0.076     136     189 ..     158     211 ..     142     220 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.1e-05
   PF03482.8 136 ytppyggalgtgyekrddwrgpghipkpeneqspnpshipeppqiewpqwngfd 189
                   p y+  l+   +kr d r  g +   + +q p p+ ip  p  + p  n + 
  MMETSP0890-20130614|3469_1 158 NKPAYAAELAQTLQKRGDTRDSGVVQFQQAQQQPVPCNIPINPPTDVPSPNTIA 211
                 5799************************************99999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.60
# Mc/sec: 1006.47
//
Query:       MMETSP0890-20130614|3473_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|3489_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   12.3   0.0      0.083   12.1   0.0    1.2  1  PF08849.6 Putative inner membrane protein (DUF1819)


Domain annotation for each model (and alignments):
>> PF08849.6  Putative inner membrane protein (DUF1819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.1e-06     0.083      31      90 ..       4      62 ..       1      87 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.1e-06
   PF08849.6 31 dedewrekiveeNllqkrsestakriareirkRletldeeelellaegdaeeakqlllla 90
                 +d++ +++++eNll  ++e ++ + + e+++Rl++ ++++l+   ++++ e k  +++ 
  MMETSP0890-20130614|3489_1  4 LIDQMSSRALDENLLPRTKEPSIGEWM-EMINRLNVKEDSLLTTAKSSKKGEGKLTVFIV 62
                57999***********99999999887.5679**********998888888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 313.89
//
Query:       MMETSP0890-20130614|3490_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 192.43
//
Query:       MMETSP0890-20130614|3492_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.29s 00:00:00.60 Elapsed: 00:00:00.64
# Mc/sec: 202.19
//
Query:       MMETSP0890-20130614|3484_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-23   82.3   2.1    2.2e-23   81.6   1.4    1.4  1  PF00226.26 DnaJ domain
    2.5e-21   75.2   0.9    1.3e-15   56.8   0.0    3.3  3  PF01556.13 DnaJ C terminal domain
    9.8e-08   31.8   5.0    2.2e-07   30.7   3.4    1.5  1  PF00684.14 DnaJ central domain
  ------ inclusion threshold ------
      0.069   12.4   4.2       0.24   10.7   0.3    2.3  2  PF08063.7  PADR1 (NUC008) domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   1.4   6.3e-27   2.2e-23       2      64 .]      36      93 ..      35      93 .. 0.96

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 6.3e-27
                HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                +Y+ Lg++k+as++eIkka+rkla+k HPDk  +d+    e fk+i++AyevLsdpekr++yd
  MMETSP0890-20130614|3484_1 36 LYKQLGLEKKASQQEIKKAFRKLAIKAHPDK-GGDP----EEFKKIQAAYEVLSDPEKREKYD 93
                7******************************.7888....89********************8 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.029     1e+02      24      54 ..     147     180 ..     138     188 .. 0.80
   2 !   12.2   0.0   3.3e-05      0.11      15      67 ..     200     249 ..     194     257 .. 0.81
   3 !   56.8   0.0   3.9e-19   1.3e-15       1      75 [.     262     344 ..     262     351 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.029
  PF01556.13  24 ldgrkikvkippgtkpgekl...rikgkGmpkkk 54 
                  +g++ k+ i   +  ge     + kg+Gm ++ 
  MMETSP0890-20130614|3484_1 147 YNGKTAKLAITRSVMKGEPKkctTCKGQGMVIQM 180
                 456999999999999999998889******7765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.3e-05
  PF01556.13  15 lGgtvevptldgrkikvkippgtkpgeklrikgkGmpkkknsnerGdLivkvn 67 
                  G +v+ +   +  ++v++++g ++++klr+ g+G   + ns e Gd + +++
  MMETSP0890-20130614|3484_1 200 GGYQVQMKKERQ-VLEVNVDKGASHNTKLRFSGMGN-ESPNS-EPGDVVFVLQ 249
                 566677777667.89*********************.66666.7999998776 PP

  == domain 3    score: 56.8 bits;  conditional E-value: 3.9e-19
  PF01556.13   1 dLiveleislkeAllGgtvevptldgrkikvkippgtkpgekl............rikgkGmpkkknsnerGdLivkvnvkfPkkls 75 
                 dL  +++is++eAl+G++++++ ldgr++ v+    +kpg+++             + g+Gmpk++n++++G+L+v++ + fP ++s
  MMETSP0890-20130614|3484_1 262 DLLLNKNISVVEALCGFKFVIKQLDGRNLLVQ----SKPGQIVrpevtsgvpyvmCVDGEGMPKQGNPFDKGRLFVIFTIIFPPNYS 344
                 8999****************************....5555555555556666677****************************9986 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   3.4   6.4e-11   2.2e-07      12      53 ..     162     204 ..     156     210 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 6.4e-11
  PF00684.14  12 gkkvktCkkCnGsGvvvkeqr.apggvvqsqqtCekCkGkGki 53 
                 + ++k+C++C+G+G+v++ ++  pg+v+q q++C++C G  ++
  MMETSP0890-20130614|3484_1 162 KGEPKKCTTCKGQGMVIQMRQiGPGMVQQLQSRCPECTGGYQV 204
                 67899****************9****************97665 PP

>> PF08063.7  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   6.9e-05      0.24       9      28 ..     160     179 ..     156     188 .. 0.87
   2 ?    2.9   0.2     0.019        65      15      28 ..     193     206 ..     186     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.9e-05
   PF08063.7   9 llfGalekCpeCsggqlvfn 28 
                 +++G ++kC++C+g+ +v +
  MMETSP0890-20130614|3484_1 160 VMKGEPKKCTTCKGQGMVIQ 179
                 689***********887766 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.019
   PF08063.7  15 ekCpeCsggqlvfn 28 
                  +CpeC gg  v  
  MMETSP0890-20130614|3484_1 193 SRCPECTGGYQVQM 206
                 58******877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:01.17
# Mc/sec: 843.85
//
Query:       MMETSP0890-20130614|3497_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-48  163.4   0.0    4.4e-48  163.1   0.0    1.0  1  PF04029.9 2-phosphosulpholactate phosphatase


Domain annotation for each model (and alignments):
>> PF04029.9  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.0   3.2e-52   4.4e-48       4     224 ..      26     255 ..      23     263 .. 0.91

  Alignments for each domain:
  == domain 1    score: 163.1 bits;  conditional E-value: 3.2e-52
   PF04029.9   4 vyllpeeakeeekvaVViDvLRAtttiataLanGakeiipvedieealelkkkl......ekvllaGErggkkiegfdlgNSPleytkekve.gktlvltTTNGtralkrakeakevligslvNakavaeylrkkaeeevvivcagtegkfslEDvlcAgaiaklllkegee....aelndealaalelyksdekdllellkksshakrlkklgleeDlefclkldkldivp 224
                 +  lp+e+++ ++vaV iD+ RAt+t++ta+a+G  e  ++++iee    ++k+      ++vll+GEr+ +ki+gfdl+NSP +y+ e++  gk+l++t+TNG ral  + +  +v++g+++N +a+   +++   ++++++c+gt+g+ s+ED l+Aga+a++l ++       +++ d a++a ++       + +++++s++ak l+  gl +D+ef+ ++d +  + 
  MMETSP0890-20130614|3497_1  26 IAPLPSEVSQVPNVAVLIDIQRATSTLTTAFAHGLYEARIYAHIEEVRSRAEKMkqeedgDDVLLGGERNFIKIDGFDLDNSPRAYADEQLIaGKSLLFTSTNGARALAVLPKTTTVILGCFLNQRATRHFCQSC-RSDLLLLCSGTHGERSDEDELFAGALASYLVEHCGYsyadNTTRDIAQVADHAAAF-PLAWNKIMSESNNAKGLLVNGLAADIEFVKQIDLYPNIL 255
                 667788888889********************************99888888877888999**************************999855************************************999999.9*******************************998777766677777777666665.789******************************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.53s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1068.09
//
Query:       MMETSP0890-20130614|3495_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-18   66.2   0.7    2.4e-18   66.1   0.5    1.0  1  PF00573.17 Ribosomal protein L4/L1 family
  ------ inclusion threshold ------
      0.072   12.4   0.0      0.076   12.3   0.0    1.2  1  PF00270.24 DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> PF00573.17  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.5   3.5e-22   2.4e-18      86     190 ..       1     108 [.       1     110 [. 0.92

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 3.5e-22
  PF00573.17  86 lnkKvrrlAlrsaLsakarqgkllvvdnle.ple.epktkeavellkklgl.esksvLivvsekdenlvlasrnlpgvevlevdelnvydllkgdkvvitksAlekle 190
                 +n+K+ +lA+ +a+++ka ++  +vvd+l  +l  +pktk +v ll kl l  s ++++v++e de l ++ +nlp++e+  +de++v d+l +++vv++k A+++++
  MMETSP0890-20130614|3495_1   1 MNRKEAELAISIAIQNKAIANDAVVVDSLVgKLSaPPKTKAVVDLLTKLDLdPSLNTILVIDEYDELLDKSQNNLPKLELRLQDEISVSDMLWAKNVVFSKPAFDWVN 108
                 7**************************985556569**************96455888888899******************************************87 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.076     110     148 ..      42      79 ..       3     100 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
                 HHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24 110 lddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqil 148
                 ++dl+ +  l+ s   +lV+DE d+ll+++ +++l ++ 
  MMETSP0890-20130614|3495_1  42 VVDLLTKLDLDPSLNTILVIDEYDELLDKS-QNNLPKLE 79 
                 56666654455455778***********54.44454444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.45s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 385.36
//
Query:       MMETSP0890-20130614|3507_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.6    6.8  10.1         37    4.6   7.0    2.2  1  PF05001.8  RNA polymerase Rpb1 C-terminal repeat


Domain annotation for each model (and alignments):
>> PF05001.8  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.0    0.0027        37       1      13 [.       4      15 ..       3      16 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0027
   PF05001.8  1 SPaSPaYSPtSPg 13
                SP+SP+ SPtSP+
  MMETSP0890-20130614|3507_1  4 SPTSPT-SPTSPN 15
                9*****.*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       778  (0.0569046); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 275.75
//
Query:       MMETSP0890-20130614|3505_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-26   90.2   0.0    1.5e-25   89.4   0.0    1.3  1  PF13847.1  Methyltransferase domain
    1.3e-18   67.1   0.1    4.8e-18   65.3   0.0    2.1  2  PF08241.7  Methyltransferase domain
    3.3e-13   49.1   0.0    8.7e-13   47.7   0.0    1.6  2  PF01209.13 ubiE/COQ5 methyltransferase family
    9.2e-12   45.4   0.1    2.9e-11   43.7   0.0    1.9  2  PF12847.2  Methyltransferase domain
    2.3e-09   37.0   0.0    3.8e-09   36.3   0.0    1.3  1  PF13489.1  Methyltransferase domain
    1.3e-08   35.0   0.0      3e-08   33.8   0.0    1.7  1  PF13649.1  Methyltransferase domain
    2.6e-08   34.1   0.0    5.4e-08   33.1   0.0    1.6  1  PF08242.7  Methyltransferase domain
    1.9e-06   27.4   0.1    5.6e-06   25.9   0.1    1.7  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    2.3e-06   27.5   0.3      8e-06   25.7   0.0    2.1  2  PF13659.1  Methyltransferase domain
    4.7e-05   22.5   0.2    0.00011   21.3   0.0    1.6  2  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    0.00064   19.2   0.1     0.0013   18.3   0.1    1.5  1  PF05148.10 Hypothetical methyltransferase
     0.0086   15.0   0.0      0.021   13.8   0.0    1.6  1  PF08704.5  tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.034   13.7   0.0    1.5  1  PF13679.1  Methyltransferase domain
      0.037   13.8   0.0      0.068   13.0   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase
      0.041   13.3   0.0      0.079   12.4   0.0    1.4  1  PF02475.11 Met-10+ like-protein


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.6e-28   1.5e-25       2     127 ..     255     381 ..     254     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 1.6e-28
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe...nveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelskl 127
                 k g +v+DlG+G+G +++++ + +gp+++v+G+D+++e++++A+ + q+ ++e    v+F+ g+ie+l+  +  +  D visn+v+n++ d+++v++e+ rvlkpggrl ++++   a+lp+el+ ++ +
  MMETSP0890-20130614|3505_1 255 KPGEVVIDLGAGAGIDCFAAGKAVGPKGRVIGVDMTPEMVSKARGI-QQEHIElkdVVSFRLGEIEHLP--VGdSIADCVISNCVINLSVDKPQVYREMNRVLKPGGRLAISDVLRIADLPSELKLKNHI 381
                 67899****************************************5.5555555599************..999999************************************99777777666655553 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.1   6.5e+03       4      36 ..     160     192 ..     158     207 .. 0.64
   2 !   65.3   0.0   5.2e-21   4.8e-18       1      95 []     261     362 ..     261     362 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 7.1
   PF08241.7   4 GcGtglllealaerpaarvtgvDlseemlatak 36 
                 G+ + l + al ++ ++ v++ D+ +  l  a+
  MMETSP0890-20130614|3505_1 160 GVTSELPALALFQHGKKLVVANDPAKIELFIAQ 192
                 555666667777777888888888877444433 PP

  == domain 2    score: 65.3 bits;  conditional E-value: 5.2e-21
   PF08241.7   1 LdvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle......lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 +d+G+G g+ + a  ++  p++rv+gvD+ +em+++a+  ++e+ +e      ++ + +e+lp+ d+  D+v+s++v++   d  ++ +e+ RvLkpgG+l+i
  MMETSP0890-20130614|3505_1 261 IDLGAGAGIDCFAAGKAvgPKGRVIGVDMTPEMVSKARGIQQEH-IElkdvvsFRLGEIEHLPVGDSIADCVISNCVINLSVDKPQVYREMNRVLKPGGRLAI 362
                 59*********************************999987776.45599**************************************************986 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   9.6e-16   8.7e-13      45     154 ..     254     365 ..     249     387 .. 0.86
   2 ?   -2.6   0.0       2.3   2.1e+03     201     218 ..     391     408 ..     384     412 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 9.6e-16
  PF01209.13  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki..nieflqanaeeLpfeddsfDvvtvsfGlrnv.tDklkaLkeayrvlkpGGrlvvlef 154
                  k+g+ v+D+ +G+g   f+  ++vg kg+v+++D+ ++m++ ++   +e+      + f  ++ e+Lp  d   D+v  s  + n+  Dk+++ +e+ rvlkpGGrl + ++
  MMETSP0890-20130614|3505_1 254 LKPGEVVIDLGAGAGIDCFAAGKAVGPKGRVIGVDMTPEMVSKARGIQQEHIELkdVVSFRLGEIEHLPVGDSIADCVI-SNCVINLsVDKPQVYREMNRVLKPGGRLAISDV 365
                 578999************************************99876666544444799*****************995.555555516******************988665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.3
  PF01209.13 201 qetlkeliedaGfksvey 218
                  +++ +l+ daGf  v+ 
  MMETSP0890-20130614|3505_1 391 SDEMSTLLADAGFIDVKI 408
                 5789999******99986 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.6   8.8e+03      20      43 ..     169     193 ..     164     210 .. 0.60
   2 !   43.7   0.0   3.2e-14   2.9e-11       1     111 [.     256     364 ..     256     365 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 9.6
   PF12847.2  20 arlrpgak.vvgvDpseeslelare 43 
                 a  ++g k vv+ Dp +  l +a++
  MMETSP0890-20130614|3505_1 169 ALFQHGKKlVVANDPAKIELFIAQA 193
                 4433556678888885555444443 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 3.2e-14
   PF12847.2   1 kgkrilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaks.ldleeriellqgdakeelsller.fDavllkgltldallal.deprrvlealpkllkpggrlvies 111
                 +g+ ++DlG+G G  ++++ +   p+++v+gvD  +e+++ ar   ++   l + ++++ g++ e+l +++   D+v+ ++     ++ l  ++ +v +++ + lkpggrl i+ 
  MMETSP0890-20130614|3505_1 256 PGEVVIDLGAGAGIDCFAAGKaVGPKGRVIGVDMTPEMVSKARGIQQEhIELKDVVSFRLGEI-EHLPVGDSiADCVISNC-----VINLsVDKPQVYREMNRVLKPGGRLAISD 364
                 57778**************99988*******************5554434688999*******.888888889********.....66666688999**************9975 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   4.2e-12   3.8e-09      18     160 ..     252     406 ..     244     408 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 4.2e-12
   PF13489.1  18 arlkpggrvLDiGcGtGillell.aengf..dvtgvDpspaaigk...........akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthisffsaeslkelleeaGfeiv 160
                 a+lkpg  v+D+G+G Gi +    ++ g+  +v+gvD  p++++k           ++ + +     e   + +  +d+++++ v++   d +++ r++++ lkpgG l +s+ ++  a+  + +k++ + p+ +       +++  ll +aGf +v
  MMETSP0890-20130614|3505_1 252 AKLKPGEVVIDLGAGAGIDCFAAgKAVGPkgRVIGVDMTPEMVSKargiqqehielKDVVSFRLGEIEHLPVGDSIADCVISNCVINLSVDKPQVYREMNRVLKPGGRLAISDVLR-IADLPSELKLKNHIPA-ELPXASASDEMSTLLADAGFIDV 406
                 5699*************999988788899888************9665555543332222222222222444666**************************************997.4444444444444444.66666677888888888888877 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   3.3e-11     3e-08       1     101 []     260     358 ..     260     358 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 3.3e-11
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl....kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                 ++dlG G+G + +a+ +a+  gp+ rvigvD ++e++ +a+   ++ ++     v+f  + +++lp  ++  d+v++ +++++  s  + +++++e+ rvlkpgG
  MMETSP0890-20130614|3505_1 260 VIDLGAGAGIDCFAAGKAV--GPKGRVIGVDMTPEMVSKARGIQQE-HIelkdVVSFRLGEIEHLPVGDSIADCVIS-NCVINL-S-VDKPQVYREMNRVLKPGG 358
                 68****************9..77789*************9955533.2234669***********************.998887.3.4568899**********9 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.9e-11   5.4e-08       2      99 .]     262     360 ..     261     360 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 5.9e-11
   PF08242.7   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.ssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                 ++G+G G   +a  ++  p  +++gvD  p+++  +++ +++++ +  + v ++  +++ l  g s  D v+++ v++   d+ +v +++ ++LkpgG+l
  MMETSP0890-20130614|3505_1 262 DLGAGAGIDCFAAGKAVgPKGRVIGVDMTPEMV-SKARGIQQEHIELKDVVSFRLGEIEHLPVGdSIADCVISNCVINLSVDKPQVYREMNRVLKPGGRL 360
                 9****************9***************.666666666667778888888887766666899*******************************97 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   6.1e-09   5.6e-06      69     169 ..     252     360 ..     245     365 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 6.1e-09
                 TT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--...........SEEEE--------GGG--BSEEEESSB-SS--HHHHHTB-----E CS
  PF01135.14  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle...........nvivvvgDGrkGyeekaPYdaihvgaaapeiPealidQLkeGGrl 169
                  +lk+g+ v+++G+G+G+      + vg+kgrv++++ ++e+v++a+  ++++++e             ++ vgD            +i +++  p++ +++ + Lk+GGrl
  MMETSP0890-20130614|3505_1 252 AKLKPGEVVIDLGAGAGIDCFAAGKAVGPKGRVIGVDMTPEMVSKAR-GIQQEHIElkdvvsfrlgeIEHLPVGDSIAD--CVISNCVINLSVDKPQVYREMNRVLKPGGRL 360
                 469*****************************************996.5777777766633333331112223333222..2222335666666666666666666666666 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.2   5.6e+03      17      44 ..     169     199 ..     167     233 .. 0.54
   2 !   25.7   0.0   8.7e-09     8e-06       2     113 ..     258     362 ..     257     364 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 6.2
   PF13659.1  17 aalellaalllgvEldpraaalaa...rnla 44 
                 a+++++++l+++++  +  + +a+   ++++
  MMETSP0890-20130614|3505_1 169 ALFQHGKKLVVANDPAKIELFIAQavrEAVR 199
                 5666666666666655543333332223333 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 8.7e-09
   PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlara.glaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvl 113
                  +v+d+g+G G+  +aa +++  + +++gv++ p+ +  a+   +++ +l++ v +r g +++l+    ++ +d+v++n     ++        +  ++ +++ r+lkpgG+l++
  MMETSP0890-20130614|3505_1 258 EVVIDLGAGAGIDCFAAGKAVgpKGRVIGVDMTPEMVSKARGIQQEHiELKDVVSFRLGEIEHLP--VGDSIADCVISNCVINLSV--------DKPQVYREMNRVLKPGGRLAI 362
                 68****************9988*******************554443267778***********9..99***********986332........346899************986 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.2e-07   0.00011     159     262 ..     254     367 ..     247     370 .. 0.79
   2 ?   -3.7   0.0       4.8   4.4e+03      13      44 ..     390     419 ..     388     454 .. 0.60

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.2e-07
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaak.Lgak.kvvavDiDevAvkvakeNaelNkveaklevallkelpk......ekadvivaNILaevli...eLaedikelvkeggllilSGilk 262
                 +k+ge v+D+G+G+Gi   aa k +g k +v++vD+ +  v+ a+  +++ ++e k  v    ++++      + ad +++N + +  +   +   ++++++k+gg+l++S +l+
  MMETSP0890-20130614|3505_1 254 LKPGEVVIDLGAGAGIDCFAAGKaVGPKgRVIGVDMTPEMVSKAR-GIQQEHIELKDVVSFRLGEIEhlpvgdSIADCVISNCVINLSVdkpQVYREMNRVLKPGGRLAISDVLR 367
                 68999*************999773676548***********9987.588888888765654333222233455899******998876634468999**************8875 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.8
   PF06325.8  13 aeeavseiLeelgakgvaiedsklleerdife 44 
                 a +++s +L ++g   v ie ++  + r+i+ 
  MMETSP0890-20130614|3505_1 390 ASDEMSTLLADAGFIDVKIEVKS--QSREIIG 419
                 56778888888888888887666..4555553 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.4e-06    0.0013     112     160 ..     317     366 ..     252     383 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
  PF05148.10 112 dlakvPledesvdvav.fclslmgtnladflkeanrvlkvGGllkvaevk 160
                 ++ ++P+ d+ +d ++  c+  ++ +  +  +e+nrvlk+GG l +++v 
  MMETSP0890-20130614|3505_1 317 EIEHLPVGDSIADCVIsNCVINLSVDKPQVYREMNRVLKPGGRLAISDVL 366
                 6789*********99845988899999999****************9984 PP

>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.3e-05     0.021      99     156 ..     253     311 ..     245     333 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-05
   PF08704.5  99 evkpGsvvvesGtGsgslshaiartvaPtGhlytfefheqRaekareeFreh.elsslv 156
                 ++kpG vv++ G G+g    a  ++v+P+G++  +++  + ++kar   +eh el+++v
  MMETSP0890-20130614|3505_1 253 KLKPGEVVIDLGAGAGIDCFAAGKAVGPKGRVIGVDMTPEMVSKARGIQQEHiELKDVV 311
                 789*****************************************998766663455555 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.7e-05     0.034      25      93 ..     256     320 ..     247     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.7e-05
   PF13679.1  25 gsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiae 93 
                   + v+D+GaG g   f++ +   ++  k +v+g+d+ +e+v+ka+ ++++   ++++ +sf  g+i++
  MMETSP0890-20130614|3505_1 256 PGEVVIDLGAGAGIDCFAAGK---AVGPKGRVIGVDMTPEMVSKARGIQQEHI-ELKDVVSFRLGEIEH 320
                 55789*********9999999...667899*******************9987.676777777776665 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.4e-05     0.068      20      73 ..     255     305 ..     234     371 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.4e-05
  PF01728.14  20 kvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttlqgdit 73 
                 k+g   +v+Dlga+ G  +  + + +g++g+v++vD+ p   +++++ +q++  
  MMETSP0890-20130614|3505_1 255 KPG--EVVIDLGAGAGIDCFAAGKAVGPKGRVIGVDMTPE-MVSKARGIQQEHI 305
                 555..99*******************************87.6777777765543 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.7e-05     0.079      98     177 ..     253     335 ..     249     342 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.7e-05
                 T--TT-EEEETT-----HHHHTT....TSSEEEEEES-HHHHHHHHHHHHHT..T-TTTEEEEES-GGG-...-----EEEE-- CS
  PF02475.11  98 lveegevvvdvfAGvgpfaipiaky.skaklvlavdlnpeavkylkeniklN..kvekvvkpileDvrevir.eqaadrvvmnl 177
                 ++++gevv+d+ AG g    +++k  + + +v++vd+ pe v   +  i+    ++++vv+  l+  +++   +++ad v++n 
  MMETSP0890-20130614|3505_1 253 KLKPGEVVIDLGAGAGIDCFAAGKAvGPKGRVIGVDMTPEMVSKAR-GIQQEhiELKDVVSFRLGEIEHLPVgDSIADCVISNC 335
                 679********99888655555553145557********9886543.3444422345556555566555544566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:01.18
# Mc/sec: 976.82
//
Query:       MMETSP0890-20130614|3504_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-15   57.1   9.0    5.1e-11   43.0   4.5    2.2  2  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   4.5   3.7e-15   5.1e-11      24     203 ..     238     415 ..     223     421 .. 0.65
   2 !   14.2   0.0   2.5e-06     0.034     192     218 ..     534     559 ..     498     560 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 3.7e-15
                 S----S----TTHHHHHHHHHHHHHHHHHH--....------B---S...--SS--HHHH-SEEE-TSST-....EEE-T..T---EETTTTEE-B-..--S-GCCS--------.-HHHHHHHHHHH-.........................-SHHHHHHHHHH..........HHHHHHHH--.-----TTGGGGS CS
  PF00264.15  24 knkgyciHgsvlFltWHRpYlllfEqalreecgyaapdvrlPYWdwa...eeelpedlansaifdkepegkgggcvtnplysfkakdltvelgkveedaekkkeaetkrclkrnleatsanqelakqed...veellakll.............sdytgfsntsegagksalslespHnavHvwvGgGhmgdvavaafD 203
                  +  +  H+ + F+t H +++l+fEq l+++     p+v+ PYWd++   + + p+ +++s +f +++ gk   + +n l+     ++      ++++a k ++ ++++ + r   +++ ++ ++++++    e+ +                 +++++fs+ +++         ++H+++H +vG G+ ++ ++ a+D
  MMETSP0890-20130614|3504_1 238 SWDCDHWHQGAGFVTSHVAFTLQFEQSLQTIY----PEVTTPYWDFTlesTLYEPQTWRSSMVFADDWFGK--ASPDNILHTVVDGRWAFAP--AKTSAAKFSDVHNSYGVLRAPWNNDPTPFMTRNSAiygYENNM---KpsgcqeyafamrkTSWMSFSKQLNS---------AAHGHIHETVG-GSWNQYFSEAND 415
                 5666788*************************....************99999999999************..4444444444433333333..2333355556677777777663444444444444444422222...12223311122222555555555555.........9**********.665444444444 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.5e-06
                 -----TTGGGGSTHHHHHHHHHHHHHH CS
  PF00264.15 192 GhmgdvavaafDPiFflHHaniDrlwa 218
                 G+m + a++ +D  F++ H  +Drlw+
  MMETSP0890-20130614|3504_1 534 GDM-YQATSTNDITFWVLHPTVDRLWH 559
                 566.899*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.46s 00:00:01.38 Elapsed: 00:00:01.09
# Mc/sec: 1316.90
//
Query:       MMETSP0890-20130614|3516_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-14   50.7   2.5    6.4e-07   28.8   0.1    2.9  3  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0035   17.4   2.7     0.0056   16.8   1.8    1.3  1  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.018   14.0   0.1      0.028   13.4   0.1    1.3  1  PF04826.8  Armadillo-like
      0.029   14.8   2.2       0.13   12.7   0.7    2.0  2  PF13513.1  HEAT-like repeat
      0.029   14.3   1.3      0.043   13.7   0.9    1.5  1  PF14459.1  Prokaryotic E2 family C


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.17   4.6e+02      29      37 ..       8      16 ..       2      20 .. 0.74
   2 !   28.8   0.1   2.3e-10   6.4e-07       3      40 ..      22      59 ..      21      60 .. 0.96
   3 !   20.0   0.0   1.4e-07   0.00039       1      24 [.      61      84 ..      61      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.17
                HHHHHHHHH CS
  PF00514.18 29 qeeAawALs 37
                +e Aa+AL+
  MMETSP0890-20130614|3516_1  8 KEKAAGALW 16
                567888887 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 2.3e-10
                HHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  3 enkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                +nk a+  aGa++pL++LL+sg    +e Aa+AL NLa
  MMETSP0890-20130614|3516_1 22 DNKTAIASAGAIRPLIALLSSGTAIAKEKAAGALKNLA 59
                6999*********************************9 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.4e-07
                CHHHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18  1 spenkqavieaGavppLvqLLksg 24
                +  nk a+ +aGa++pL++LL+sg
  MMETSP0890-20130614|3516_1 61 NENNKIAIANAGAIRPLIALLSSG 84
                5679******************86 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.8     2e-06    0.0056      18      73 ..      12      83 ..       4      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2e-06
   PF13646.1 18 aaaieaLg......qlgseealpaLlelLkdsdpevRraAaeaLgkl..........gdpealpaLlklldd 73
                a a+++L+       ++s+ a+ +L++lL++  +  +++Aa aL +l          ++  a+++L+ ll +
  MMETSP0890-20130614|3516_1 12 AGALWCLAvydnktAIASAGAIRPLIALLSSGTAIAKEKAAGALKNLavnennkiaiANAGAIRPLIALLSS 83
                568888889999888999999************************995544444433478899999998876 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     1e-05     0.028      28      91 ..       6      68 ..       1      71 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1e-05
   PF04826.8 28 liqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqkki 91
                + +e+a  +l   a+y  n+  i + g i  + +lls+  +  keka  al nl+vn++n+  i
  MMETSP0890-20130614|3516_1  6 TAKEKAAGALWCLAVYD-NKTAIASAGAIRPLIALLSSGTAIAKEKAAGALKNLAVNENNKIAI 68
                56778888888888886.7788889999988889************************998765 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   4.9e-05      0.13       6      55 .]      13      58 ..      10      58 .. 0.72
   2 ?    7.9   0.0    0.0016       4.3       5      39 ..      49      83 ..      48      90 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.9e-05
   PF13513.1  6 aAawaLGrlaggeprllepavpellpaLlelLedddd.eV.ReaAawALgrl 55
                +A+w+L    ++ ++  + a   ++ +L++lL  ++   + +e Aa+AL +l
  MMETSP0890-20130614|3516_1 13 GALWCL----AVYDNKTAIASAGAIRPLIALL--SSGtAIaKEKAAGALKNL 58
                799***....5666666666666777777666..4443777********997 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0016
   PF13513.1  5 raAawaLGrlaggeprllepavpellpaLlelLed 39
                + Aa aL +la++e + ++ a+  ++ +L++lL++
  MMETSP0890-20130614|3516_1 49 EKAAGALKNLAVNENNKIAIANAGAIRPLIALLSS 83
                67888998899*********************965 PP

>> PF14459.1  Prokaryotic E2 family C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   1.6e-05     0.043      25      65 ..      32      74 ..       7      90 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-05
   PF14459.1 25 rlypvlailplgsa..askqakalerlaksinekigirrsgks 65
                 + p +a+l +g a   +k a al++la   n+ki+i+ +g  
  MMETSP0890-20130614|3516_1 32 AIRPLIALLSSGTAiaKEKAAGALKNLAVNENNKIAIANAGAI 74
                5779*******987313456889****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 320.69
//
Query:       MMETSP0890-20130614|3512_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-13   49.6   0.0    2.3e-12   46.5   0.0    2.3  2  PF00439.20 Bromodomain
  ------ inclusion threshold ------
      0.077   12.7   9.2       0.29   10.9   0.1    2.9  2  PF02575.11 YbaB/EbfC DNA-binding family
        2.3    8.1   8.0        1.4    8.8   1.3    2.9  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   4.9e-16   2.3e-12       1      83 [.     347     432 ..     347     433 .. 0.93
   2 ?    0.0   0.0      0.16   7.2e+02      22      41 ..     604     623 ..     589     625 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 4.9e-16
  PF00439.20   1 ceqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyne.egsdvyedar 83 
                 c  i++++ +   a++F+  v   a  +  Y +i++ P+dL t++++l++g ++ +++f ++++l+f Na+++n  ++++v+e+ar
  MMETSP0890-20130614|3512_1 347 CHAIITNVERATGAHWFMTEVdpVALGVLHYRSIVTSPMDLGTVKRRLEEGLITDIYAFTAEMRLIFRNALTFNVlPEAPVHEAAR 432
                 66788888888899999999977778899******************************************************998 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.16
  PF00439.20  22 dakeapdYydiikrPidLkt 41 
                 +++++    +i+++ +dL+t
  MMETSP0890-20130614|3512_1 604 PPEKLGHVVKIVQNHMDLST 623
                 6777778889********98 PP

>> PF02575.11  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   3.1     0.017        77       2      27 ..     538     563 ..     537     584 .. 0.91
   2 ?   10.9   0.1   6.3e-05      0.29      44      79 ..     628     663 ..     626     673 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.017
  PF02575.11   2 kqaqkmqekmeeaqeelaekeveges 27 
                 k++++mqe ++ +q++ a++ev+ + 
  MMETSP0890-20130614|3512_1 538 KEMRAMQETIDMLQKQAAQTEVQLQT 563
                 789*******************9765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 6.3e-05
  PF02575.11  44 sveidpelldpedkemledlivaAindAlkkaeela 79 
                 ++eid e+l+ e    l+++++ A+ +A++ka+  a
  MMETSP0890-20130614|3512_1 628 EIEIDIEILNTETLRHLQNYVKNALAAAKRKAASGA 663
                 79*****************************98755 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3   0.00031       1.4      27      98 ..     529     601 ..     511     605 .. 0.76
   2 ?    1.4   0.3     0.062   2.8e+02      44      79 ..     637     676 ..     627     683 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00031
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  27 dvdelleldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleaele 98 
                  v+e+l+l++e+r++q +++ lq++  +   +++  ++     a+   a  k+ k +l    +e ++l+++++
  MMETSP0890-20130614|3512_1 529 PVSEFLKLQKEMRAMQETIDMLQKQAAQTEVQLQTNMEFAvSAAKPSAAARKAAKMKLPLTFEEKQQLSNDIN 601
                 689**********************999999999888777555555555556666666666666666666665 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.062
                 HHHHHHHHHHHHHHHGGGTTT......HHCCCHHHHHHHH CS
  PF02403.17  44 eleelqaerNelskeIgkakkkk....edaeeliaevkel 79 
                  +e l++ +N + ++++ ak+k        ++  +++k++
  MMETSP0890-20130614|3512_1 637 NTETLRHLQNYVKNALAAAKRKAasgaTGSARPSKQSKKI 676
                 6899****************98843332222233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       905  (0.0661937); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:01.00
# Mc/sec: 1737.36
//
Query:       MMETSP0890-20130614|3515_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.035   13.2   3.3       0.45    9.5   0.0    2.2  2  PF06022.6  Plasmodium variant antigen protein Cir/Yir/Bir
       0.08   12.7   0.3       0.11   12.3   0.2    1.1  1  PF12080.3  GldM C-terminal domain
       0.11   11.6   0.6       0.13   11.3   0.4    1.1  1  PF05139.9  Erythromycin esterase
       0.11   11.5   1.1       0.12   11.4   0.7    1.2  1  PF09777.4  Osteopetrosis-associated transmembrane protein 1 precursor
       0.52    9.7   2.9       0.83    9.1   0.4    2.5  3  PF08828.5  Doublesex dimerisation domain
       0.93    8.3   3.2        1.1    8.0   2.2    1.2  1  PF07851.8  TMPIT-like protein
       0.99    9.6   9.2        1.7    8.8   6.4    1.5  1  PF03011.10 PFEMP DBL domain
        1.3    6.6   4.1        1.5    6.4   2.9    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
        2.9    7.3  12.6        3.7    6.9   8.7    1.2  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF06022.6  Plasmodium variant antigen protein Cir/Yir/Bir
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0003      0.45     172     201 ..       9      38 ..       1      43 [. 0.83
   2 ?    4.0   0.9     0.014        22     159     198 ..      48      87 ..      47     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0003
   PF06022.6 172 kkylekaneFvkkYeeLnedsnitkdssys 201
                  ++  +  +Fv++Ye+L  d+ i++++ y 
  MMETSP0890-20130614|3515_1   9 MDVEGNSDQFVSEYEQLRIDDRIKENNAYL 38 
                 45667899*******************996 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
   PF06022.6 159 nmyteldeekknckkylekaneFvkkYeeLnedsnitkds 198
                 n+ +e ++e++  kk+l+k+++  + +++L ed ++ +d+
  MMETSP0890-20130614|3515_1  48 NLIEEEKKETSGVKKHLNKQEKLLSDCQKLLEDMKTSDDT 87 
                 577788899999*****************99999888776 PP

>> PF12080.3  GldM C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   7.3e-05      0.11      92     164 ..      52     128 ..      42     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.3e-05
   PF12080.3  92 kdgngtvrgekgkvklpkenlevaakidasl.edfdfdvkleVtsfevkvlrq....ptikvngnklsaaaksalrka 164
                 +++++t   +k  ++ + + l+ ++k+ +++ +++d d+k +V +f +++ ++     +  ++ ++ ++++ ++l++ 
  MMETSP0890-20130614|3515_1  52 EEKKETSGVKK-HLNKQEKLLSDCQKLLEDMkTSDDTDAKRQVDEFCLDIEDNmsllRKAEKSSQEEQDRVDELLNRS 128
                 44444444455.78888999*********************************9888444555556667777777665 PP

>> PF05139.9  Erythromycin esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   8.3e-05      0.13     119     182 ..      61     125 ..      34     134 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.3e-05
                 ..SCCCCCHHHHHHHHHHHHCCHGGGGG----.-CCHHHHHHHHHHHHHHHHHCCSSSSSCHHHH CS
   PF05139.9 119 lgakseeeevvaqledllarllayaaelgaka.eeefesaeqnarlvrqaeryyramaegsaesw 182
                 +++  ++e++++ +++ll++++++ + +++++ +e   ++e n +l+r+ae+  +++ ++ +e +
  MMETSP0890-20130614|3515_1  61 KKHLNKQEKLLSDCQKLLEDMKTSDDTDAKRQvDEFCLDIEDNMSLLRKAEKSSQEEQDRVDELL 125
                 33889999*******************99999888899**************9999888776655 PP

>> PF09777.4  Osteopetrosis-associated transmembrane protein 1 precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   7.9e-05      0.12     114     170 ..      53     109 ..       9     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.9e-05
   PF09777.4 114 knlqgkkldlslsnssevCksCkedYkelndlYeklekanekrlCiDvedamNqTrk 170
                 ++++++ ++++l++++++ ++C++  ++++       k +  ++C+D+ed+m   rk
  MMETSP0890-20130614|3515_1  53 EKKETSGVKKHLNKQEKLLSDCQKLLEDMKTSDDTDAKRQVDEFCLDIEDNMSLLRK 109
                 344455566777789999999999999999998888888889**********87776 PP

>> PF08828.5  Doublesex dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4   0.00055      0.83       3      17 ..      67      81 ..      65      84 .. 0.88
   2 ?   -0.8   0.0      0.67     1e+03      36      54 ..      84     102 ..      80     117 .. 0.71
   3 ?   -2.1   0.0       1.7   2.5e+03      41      54 ..     110     123 ..     100     131 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00055
   PF08828.5  3 kdelldrcqkLLEkf 17
                +++ll  cqkLLE +
  MMETSP0890-20130614|3515_1 67 QEKLLSDCQKLLEDM 81
                89***********86 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.67
   PF08828.5  36 adieeAsrrIeEgklvvne 54 
                 +d  +A r+++E  l ++ 
  MMETSP0890-20130614|3515_1  84 SDDTDAKRQVDEFCLDIED 102
                 4566788888886655555 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.7
   PF08828.5  41 AsrrIeEgklvvne 54 
                 A +  +E++  v+e
  MMETSP0890-20130614|3515_1 110 AEKSSQEEQDRVDE 123
                 44444444443333 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.2   0.00075       1.1      24      89 ..      47     112 ..      26     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00075
   PF07851.8  24 kqkleeleklqekcasaikkqkkrlkelkkslkklkkkltkeekekvekleeeikerkaqlfdmes 89 
                 k+ +ee +k  + + ++++kq+k l++ +k l+++k++  ++ k +v++   +i+   + l++ e+
  MMETSP0890-20130614|3515_1  47 KNLIEEEKKETSGVKKHLNKQEKLLSDCQKLLEDMKTSDDTDAKRQVDEFCLDIEDNMSLLRKAEK 112
                 456788888899999**********************************99999998888887775 PP

>> PF03011.10  PFEMP DBL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.4    0.0011       1.7      47     143 ..      50     136 ..      16     140 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0011
  PF03011.10  47 vekKkkeWkkikehfkkqkkikkkskeeldlesvleklllqkeikkakgdakelkklkellkkekekkseeeekntekkdiidkLLekekkkaekCk 143
                 +e+ kke   +k+h +kq+k  ++       +++l    ++ + +++ + +++++++   ++ + +  ++ e++ +e++d +d+LL++ +    +C 
  MMETSP0890-20130614|3515_1  50 IEEEKKETSGVKKHLNKQEKLLSD----C--QKLL----EDMKTSDDTDAKRQVDEFCLDIEDNMSLLRKAEKSSQEEQDRVDELLNRSQAILLQCD 136
                 677788888999999999888753....2..2223....2333444444445555555555554444444444456899***********9999997 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.9   0.00097       1.5      35     123 ..      30     125 ..       7     146 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00097
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX CS
  PF01496.14  35 everklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkevees.....lesLekelneleelrnvlreekefleenk..veelr 123
                   + + ++les    ++++l +e++k+    +k++++ e+ l+++++ l+++++s     ++++++  +++e   ++lr+++++ +e++  v+el 
  MMETSP0890-20130614|3515_1  30 RIKENNAYLESLGLGNEKNLIEEEKKETSGVKKHLNKQEKLLSDCQKLLEDMKTSddtdaKRQVDEFCLDIEDNMSLLRKAEKSSQEEQdrVDELL 125
                 444444555555445555555555555555555788888888888888888876522222568888889999999999998888888654433333 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.7    0.0024       3.7      99     188 ..      26     132 ..       6     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0024
   PF04156.9  99 qleerlaeleseledleedlellq.eelksleerlesleesikelakeirelr................eeisdlkeevqelrselerlqedlqrlqeklaelqrll 188
                 +++ r++e+ + le+l   +e+++ ee+k++ + +++   + ++l +++++l+                e + d ++ +  lr++ +++qe+++r++e l+++q++l
  MMETSP0890-20130614|3515_1  26 RIDDRIKENNAYLESLGLGNEKNLiEEEKKETSGVKKHLNKQEKLLSDCQKLLedmktsddtdakrqvdEFCLDIEDNMSLLRKAEKSSQEEQDRVDELLNRSQAIL 132
                 4789999***************99********************************9*8888888888777777777777777777777888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1386  (0.101375); expected 273.4 (0.02)
Passed bias filter:                      714  (0.0522235); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:01.18
# Mc/sec: 333.05
//
Query:       MMETSP0890-20130614|3525_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-17   61.7   0.4    3.9e-17   61.3   0.3    1.2  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.3   2.8e-21   3.9e-17       3      63 ..       1      59 [.       1      64 [. 0.94

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 2.8e-21
                HHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGE CS
  PF01423.17  3 lqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGeni 63
                l+ ++++r+t++l + r+v G L+++D+fmNlvL+d++e +++++ +   +g+i++RG++i
  MMETSP0890-20130614|3525_1  1 LKRYMERRLTIKLVGQRRVYGYLRGYDQFMNLVLDDAVEEVSKTERR--AIGTIVLRGNSI 59
                68899***********************************8888885..***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 388.21
//
Query:       MMETSP0890-20130614|3523_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-10   38.9   0.0    1.3e-09   37.8   0.0    1.6  1  PF00575.18 S1 RNA binding domain
    1.9e-08   33.7   0.7    3.9e-08   32.7   0.0    1.9  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.6e-05   24.7   0.2    4.1e-05   23.4   0.0    1.8  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.045   13.4   0.0    1.8  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      0.044   14.2   0.1       0.27   11.7   0.0    2.1  2  PF13145.1  PPIC-type PPIASE domain
      0.061   12.9   0.2       0.14   11.7   0.1    1.5  1  PF10313.4  Uncharacterised protein domain (DUF2415)
      0.093   11.6   0.0       0.22   10.4   0.0    1.6  1  PF14111.1  Domain of unknown function (DUF4283)


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.6e-13   1.3e-09       2      61 ..     102     162 ..     101     174 .. 0.93

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 6.6e-13
                 SSTT-EEE--EEEEETTEEEEE--..--EEEEEGGGS-CCEEEECCCCEETT----EEEEE CS
  PF00575.18   2 pekGevvkGtVtsvtkgGafVdlg.ngvegfipiseissdrvedpeevlkvgdevevkvlk 61 
                 +e+Ge ++++V+++ ++Ga+V+l   + +g+i++se++  +v+d  +v+++g+ ++v++l 
  MMETSP0890-20130614|3523_1 102 LEVGEWYEAKVVKIIDYGAIVRLTaCDTRGMIHLSELDVSYVRDARNVVHIGEILPVRLLS 162
                 589******************************************************9986 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   4.8e+03      50      59 ..      93     102 ..      91     104 .. 0.85
   2 !   32.7   0.0     2e-11   3.9e-08       3      64 ..     190     252 ..     188     255 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.4
                 HHHHHHHHHH CS
  PF00076.17  50 edaekAleal 59 
                 e+a++Al+al
  MMETSP0890-20130614|3523_1  93 EEAQRALDAL 102
                 8999**9987 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2e-11
                 EESSTTTSSHHHHHHHHCT.CTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBE CS
  PF00076.17   3 VgnLppdvteeeLkelFsk.fGpiesiklvrdetgrskgfafVeFeseedaekAlealngkkl 64 
                 V  Lp++ t +++ ++Fs+ fG + +++l +++++  + + f+ Fe+ee a +++++l+g  l
  MMETSP0890-20130614|3523_1 190 VFRLPFSWTTRKIQKVFSEeFGNVFHVDLRNKRDKDERVVTFIVFEDEEGAMNCIQKLPGNRL 252
                 778********************************************************9766 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.5   6.9e+03      50      59 ..      93     102 ..      92     105 .. 0.83
   2 !   23.4   0.0   2.1e-08   4.1e-05       5      60 ..     192     248 ..     188     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.5
   PF14259.1  50 edAqkalkkl 59 
                 e+Aq+al++l
  MMETSP0890-20130614|3523_1  93 EEAQRALDAL 102
                 899**99976 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.1e-08
   PF14259.1   5 glppsvteedlreffsp.ygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln 60 
                  lp+s t  ++ + fs+ +g+v  v++  ++d+  r   f+ fe+ee A ++++kl+
  MMETSP0890-20130614|3523_1 192 RLPFSWTTRKIQKVFSEeFGNVFHVDLRNKRDKDERVVTFIVFEDEEGAMNCIQKLP 248
                 79***************66***9999986655889999*****************85 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.045       6      46 ..     208     252 ..     206     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
   PF13893.1   6 skfGkverikifrkk....ggqAfvefdtveaArkakeylngvkl 46 
                 + fG+v  + +  k     + + f+ f+++e A +++++l g+ l
  MMETSP0890-20130614|3523_1 208 EEFGNVFHVDLRNKRdkdeRVVTFIVFEDEEGAMNCIQKLPGNRL 252
                 57999988888776688889********************99876 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.27      52     103 ..      69     122 ..      56     127 .. 0.80
   2 ?   -0.4   0.0      0.79   1.5e+03      20      81 ..     224     289 ..     218     296 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
   PF13145.1  52 aalakgnsedakdlgisesesdlpeelaealfalkpgevsg..pies.dngyyvv 103
                 +++ k+++++ + l  +e++++++ee + al al++ge+ +  ++++ d+g++ v
  MMETSP0890-20130614|3523_1  69 EQIPKKYGNEGTRLITDEMDDEVDEEAQRALDALEVGEWYEakVVKIiDYGAI-V 122
                 678999999999999************************95336777666664.5 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.79
   PF13145.1  20 perktleiafvkeevaaeaalaaakak....agedfaalakgnsedakdlgisesesdlpeelaea 81 
                 +++++++++++ +e+ a    +++ +     + ed++a + +++   ++ +++++e +++ ++++ 
  MMETSP0890-20130614|3523_1 224 KDERVVTFIVFEDEEGAMNCIQKLPGNrlklDPEDIQANSYDQDSGTQEDDFFDQELEMQRPVIDR 289
                 566777877777776665444444444333234666666666666666666777776666666665 PP

>> PF10313.4  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.2e-05      0.14      19      41 ..     205     229 ..     205     230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.2e-05
   PF10313.4  19 visEhvGrvHlvDlRt..gfdehqV 41 
                 v+sE++G+v  vDlR+  ++de++V
  MMETSP0890-20130614|3523_1 205 VFSEEFGNVFHVDLRNkrDKDERVV 229
                 89*************9888888877 PP

>> PF14111.1  Domain of unknown function (DUF4283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.22     107     142 ..     188     223 ..     178     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00012
   PF14111.1 107 VrilgLPlslwseevlkkigsavGefvevdedtekl 142
                 V + +LP+s+ ++++ k + +++G++ +vd  +++ 
  MMETSP0890-20130614|3523_1 188 VAVFRLPFSWTTRKIQKVFSEEFGNVFHVDLRNKRD 223
                 7899**************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.86
# Mc/sec: 900.03
//
Query:       MMETSP0890-20130614|3534_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-19   68.7  10.6    3.4e-19   68.4   7.4    1.1  1  PF01920.15 Prefoldin subunit
  ------ inclusion threshold ------
      0.046   11.9   2.1      0.046   11.9   1.4    1.1  1  PF01499.11 Herpesvirus UL25 family
      0.079   11.1   4.5      0.084   11.0   3.1    1.1  1  PF05262.6  Borrelia P83/100 protein
      0.086   11.6   6.6      0.098   11.4   4.6    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.12   12.0   4.0       0.15   11.7   2.2    1.6  1  PF13758.1  Prefoldin subunit
       0.98    9.0   5.7        2.6    7.7   0.5    2.2  2  PF13815.1  Iguana/Dzip1-like DAZ-interacting protein N-terminal
        1.2    8.8   5.2       0.79    9.4   1.4    2.3  2  PF06698.6  Protein of unknown function (DUF1192)
        1.9    8.0  10.8        4.6    6.8   7.3    1.7  1  PF06625.6  Protein of unknown function (DUF1151)
        3.4    7.0  10.5        1.6    8.1   2.7    2.7  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   7.4   2.2e-22   3.4e-19       4     105 ..       6     107 ..       3     108 .. 0.97

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 2.2e-22
                 ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TT-EEEEE----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---- CS
  PF01920.15   4 inkfqqlqqqlqklaqqikqletqlkeielvleelelldedtkvykliGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelykklqs 105
                  + + ql+ +lq l+q + q  +q++e+elv++el+   +d+ vykliG++l+ qd + v+e++e+r+e+++ ei++ e++ + +++e+++l ee+++++++
  MMETSP0890-20130614|3534_1   6 MAAYRQLHAELQLLMQIRGQFLQQKTENELVKKELDIDGDDAIVYKLIGPLLLRQDIDVVNENVEKRLEFIQGEIEKAERNVTAKQEEQKKLAEEIRSQQHD 107
                 6789*********************************************************************************************99875 PP

>> PF01499.11  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.4     3e-05     0.046      50     114 ..      54     118 ..      14     127 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
  PF01499.11  50 kkralkaeLdnleaksqtrseeiearLreieaeleevadaldlletaaaaaeeadaaesdataae 114
                    +l++ +d +++++ +r e i+ +++++e++++  ++ +++l+++ ++++++  ++ + +a +
  MMETSP0890-20130614|3534_1  54 GPLLLRQDIDVVNENVEKRLEFIQGEIEKAERNVTAKQEEQKKLAEEIRSQQHDMRSKAADAARK 118
                 44589************************************9*9999999998777776444444 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.1   5.5e-05     0.084     275     332 ..      65     121 ..      11     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.5e-05
   PF05262.6 275 vaeekkreiekaqkeikkkdeeakkakdakaedlkkeskaeekeaedkeleakkeree 332
                 v+e+  + +e  q ei+k++ ++   +++  ++l++e +++++    k ++a ++  e
  MMETSP0890-20130614|3534_1  65 VNENVEKRLEFIQGEIEKAERNVTAKQEE-QKKLAEEIRSQQHDMRSKAADAARKVYE 121
                 36899999999999999988877644444.6899999999999889999999888654 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.6   6.5e-05     0.098      25     114 ..      12     116 ..       3     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.5e-05
   PF10186.4  25 lrlrlanlkaek.etlkkkveealeeaene.............kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asaqle 114
                 l+ +l+ l++ + + l++k e++l ++e +               l  q++    ++ ++r+e i+  ie+ ++++ +k+e++++l e+++ +++d+  + a+  
  MMETSP0890-20130614|3534_1  12 LHAELQLLMQIRgQFLQQKTENELVKKELDidgddaivykligPLLLRQDIDVVNENVEKRLEFIQGEIEKAERNVTAKQEEQKKLAEEIRSQQHDMRsKAADAA 116
                 5555555555441456777887777444448999999999998888889999999999**************************************995444443 PP

>> PF13758.1  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.2   9.6e-05      0.15      10      97 ..       5      93 ..       2      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.6e-05
   PF13758.1 10 seaeydelkeeleelke.....eddatkedllrirrdfegslvnekeikeilgekqgvertkeqvvdlisrRiDyVkenietlekrleaaEkk 97
                s a y++l++el+ l +      +++t+++l++ + d +g+      + +++g     ++  + v + +++R+++++  ie+ e++++a++++
  MMETSP0890-20130614|3534_1  5 SMAAYRQLHAELQLLMQirgqfLQQKTENELVKKELDIDGD---DAIVYKLIGPLLL-RQDIDVVNENVEKRLEFIQGEIEKAERNVTAKQEE 93
                6789***********999999967789999**********9...7778888888655.4445555679******************9876543 PP

>> PF13815.1  Iguana/Dzip1-like DAZ-interacting protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.026        39      87     116 ..      10      39 ..       2      41 .. 0.88
   2 ?    7.7   0.5    0.0017       2.6      79     118 .]      63     102 ..      54     102 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.026
   PF13815.1  87 eklkeklqeaeereqelskqeeelkslkke 116
                  +l+++lq   + + ++ +q++e++ +kke
  MMETSP0890-20130614|3534_1  10 RQLHAELQLLMQIRGQFLQQKTENELVKKE 39 
                 578899999999****************99 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0017
   PF13815.1  79 tqslseleeklkeklqeaeereqelskqeeelkslkkesk 118
                   +++++e++l+  + e+e++e +++ ++ee k+l +e++
  MMETSP0890-20130614|3534_1  63 DVVNENVEKRLEFIQGEIEKAERNVTAKQEEQKKLAEEIR 102
                 557999****************************999986 PP

>> PF06698.6  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.4   0.00052      0.79      15      51 ..      59      94 ..      45     101 .. 0.79
   2 ?   -0.2   0.3      0.53     8e+02      33      49 ..      97     113 ..      93     118 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00052
   PF06698.6 15 gqDLslLSveELeeRIalLqaEIaRleaalakkkasr 51
                +qD++    e  e+R++  q+EI+ +e ++++k+  +
  MMETSP0890-20130614|3534_1 59 RQDIDVV-NENVEKRLEFIQGEIEKAERNVTAKQEEQ 94
                5666654.47799*****************9998754 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.53
   PF06698.6  33 LqaEIaRleaalakkka 49 
                 L +EI   +  +++k a
  MMETSP0890-20130614|3534_1  97 LAEEIRSQQHDMRSKAA 113
                 77788777777777665 PP

>> PF06625.6  Protein of unknown function (DUF1151)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.3     0.003       4.6      29     116 ..       8     103 ..       2     110 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.003
   PF06625.6  29 drqeLHrELllnqkr.klvleqKpE...Lqrvlekrkedqvlkeqk....eeeeakklkselekellkraqkleelelekakekeeeeqapEflkv 116
                  +++LH EL l  +  ++ l+qK+E    ++ l+   +d ++ +        +    ++ ++ek+l+  + + e++e + ++++ee+++ +E ++ 
  MMETSP0890-20130614|3534_1   8 AYRQLHAELQLLMQIrGQFLQQKTEnelVKKELDIDGDDAIVYKLIgpllLRQDIDVVNENVEKRLEFIQGEIEKAERNVTAKQEEQKKLAEEIRS 103
                 6899*****7665555********9665588899999999988877444344444448999***************************99987775 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4      0.08   1.2e+02      35      64 ..      28      39 ..       3      53 .. 0.48
   2 ?    8.1   2.7     0.001       1.6      20      51 ..      74     105 ..      58     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.08
  PF04977.10 35 klkaeneeLeaevkdLksdedyieeqARse 64
                ++k ene  +                  +e
  MMETSP0890-20130614|3534_1 28 QQKTENELVK------------------KE 39
                3333333333..................33 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.001
  PF04977.10  20 yqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                   ++ ei++ ++++ + ++e+++L++e++  +
  MMETSP0890-20130614|3534_1  74 EFIQGEIEKAERNVTAKQEEQKKLAEEIRSQQ 105
                 56788***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1946  (0.142335); expected 273.4 (0.02)
Passed bias filter:                     1119  (0.0818461); expected 273.4 (0.02)
Passed Vit filter:                       153  (0.0111908); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.88
# Mc/sec: 345.84
//
Query:       MMETSP0890-20130614|3531_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-09   34.9   0.0     0.0025   17.3   0.0    2.1  2  PF06743.10 FAST kinase-like protein, subdomain 1
      6e-06   25.6   0.8      0.019   14.5   0.1    2.2  2  PF07671.6  Protein of unknown function (DUF1601)
     0.0068   16.8   1.4       0.68   10.4   0.2    2.2  2  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
       0.07   12.6   0.4       0.16   11.4   0.2    1.7  2  PF04542.9  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.2e-07    0.0025      18      50 ..      12      44 ..       8      47 .. 0.92
   2 !   16.1   0.0   1.8e-06    0.0061      19      49 ..      50      80 ..      45      81 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.2e-07
  PF06743.10 18 aeeffeklasalereLdsispelllnlvwSlcl 50
                a ++f+++a a  ++Ld+++p++l n+ w+++ 
  MMETSP0890-20130614|3531_1 12 APALFNAIADAALKKLDGFNPQNLANTAWAFAT 44
                6789***************************96 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.8e-06
  PF06743.10 19 eeffeklasalereLdsispelllnlvwSlc 49
                  +f+++a a  ++Lds++p++l n+ w+++
  MMETSP0890-20130614|3531_1 50 PDLFNAIAAAALTKLDSFKPQELANTAWAFA 80
                5699*************************97 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.5e-06     0.019      17      36 ..      15      38 ..      12      38 .. 0.93
   2 !    9.9   0.0   0.00015       0.5      17      36 ..      52      75 ..      49      75 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.5e-06
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+    +    FNpQ+ ANt
  MMETSP0890-20130614|3531_1 15 LFNAIAdaalKKLDGFNPQNLANT 38
                999***99***************9 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00015
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+         F+pQ+ ANt
  MMETSP0890-20130614|3531_1 52 LFNAIAaaalTKLDSFKPQELANT 75
                88899988888899*********9 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0062        21       8      34 ..       2      28 ..       1      30 [. 0.94
   2 !   10.4   0.2    0.0002      0.68       5      53 ..      36      80 ..      32      81 .] 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0062
   PF13513.1  8 awaLGrlaggeprllepavpellpaLl 34
                awa++++ +++p l + + +++l++L 
  MMETSP0890-20130614|3531_1  2 AWAFATASVEAPALFNAIADAALKKLD 28
                8***********************997 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0002
   PF13513.1  5 raAawaLGrlaggeprllepavpellpaLlelLedddd.eVReaAawALg 53
                ++ awa++++ +++p+l + +  ++l +L      + + +  +++awA++
  MMETSP0890-20130614|3531_1 36 ANTAWAFATASVEAPDLFNAIAAAALTKLD-----SFKpQELANTAWAFA 80
                578**************************9.....766344888888875 PP

>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.042   1.4e+02      33      57 ..      22      45 ..       2      47 .. 0.81
   2 ?   11.4   0.2   4.7e-05      0.16       9      55 ..      35      80 ..      31      81 .] 0.89

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.042
                --HHHHHTTSS--HHHHHHHHHHHH CS
   PF04542.9 33 rllraverfdpergvkfsawlltii 57
                ++l++++ f+p    + +aw++ ++
  MMETSP0890-20130614|3531_1 22 AALKKLDGFNPQNL-ANTAWAFATA 45
                57888999996666.8899998776 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.7e-05
                HHHHHHHHS-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHH CS
   PF04542.9  9 vrrlarrllgsgadaeDlvQeaflrllraverfdpergvkfsawllt 55
                + ++a  +   +++a Dl++ + +++l ++++f p    + +aw++ 
  MMETSP0890-20130614|3531_1 35 LANTAWAFATASVEAPDLFNAIAAAALTKLDSFKPQEL-ANTAWAFA 80
                567888899999**********************8888.89999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:00.75
# Mc/sec: 258.81
//
Query:       MMETSP0890-20130614|3546_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   37.7   0.0    1.3e-09   37.5   0.0    1.1  1  PF08373.5 RAP domain
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.12   11.8   0.0    1.1  1  PF10881.3 Protein of unknown function (DUF2726)


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.9e-13   1.3e-09       1      33 [.      19      54 ..      19      55 .] 0.89

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.9e-13
   PF08373.5  1 ieidGpthFyrnsgvll...gktklKrriLtalGwk 33
                ie+dGp+h+++  ++ +   g tk+K r+L++lGw 
  MMETSP0890-20130614|3546_1 19 IEVDGPSHYLNSKDKQRienGRTKFKSRLLRQLGWS 54
                9*******988886666699***************6 PP

>> PF10881.3  Protein of unknown function (DUF2726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05      0.12      66      99 ..      11      50 ..       6      54 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-05
   PF10881.3 66 adlkpvavIeldgashk......qgkaekrDalkeealek 99
                a+ k + +Ie+dg+sh+      q+  + r ++k+++l++
  MMETSP0890-20130614|3546_1 11 AQPKTMTAIEVDGPSHYlnskdkQRIENGRTKFKSRLLRQ 50
                5567789**********99887777788899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 223.39
//
Query:       MMETSP0890-20130614|3553_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.1  14.2      0.043   13.2   1.4    2.5  2  PF03066.10 Nucleoplasmin
     0.0025   17.3  12.0        0.1   12.1   3.2    2.2  2  PF04546.8  Sigma-70, non-essential region
     0.0062   16.6   0.7     0.0062   16.6   0.5    2.4  2  PF09026.5  Centromere protein B dimerisation domain
  ------ inclusion threshold ------
      0.029   14.8  22.5       0.36   11.3   3.4    2.4  2  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
          1    7.0  14.1        1.9    6.1   9.8    1.3  1  PF04147.7  Nop14-like family
        1.3    7.7  10.3       0.22   10.3   0.2    2.2  2  PF12753.2  Nuclear pore complex subunit Nro1
        1.4    7.0  18.1       0.61    8.2   1.0    2.1  2  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
        1.6    7.7   9.8       0.19   10.7   0.7    2.1  2  PF01056.13 Myc amino-terminal region
        2.6    5.8  12.2        1.6    6.5   0.9    2.1  2  PF02724.9  CDC45-like protein
        6.7    6.3  13.4         11    5.5   4.1    2.4  2  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        7.1    6.9   7.2        3.2    8.0   1.5    2.1  2  PF09785.4  Prp31 C terminal domain


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   3.2    0.0003      0.38     120     136 ..      23      39 ..       7      49 .. 0.58
   2 !   13.2   1.4   3.5e-05     0.043     116     137 ..     128     149 ..      78     160 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0003
                 --XXXXXXXXXXXXXXX CS
  PF03066.10 120 deedeeeeddeedddee 136
                 +ee+++e+dd+eddd+e
  MMETSP0890-20130614|3553_1  23 EEEEDDEDDDDEDDDDE 39 
                 33333333333333333 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.5e-05
                 ..----XXXXXXXXXXXXXXXX CS
  PF03066.10 116 deeddeedeeeeddeedddeee 137
                 d+ d+++d++e+dd++d d++e
  MMETSP0890-20130614|3553_1 128 DDGDEDDDIDEDDDDDDVDDDE 149
                 2222233333333333322222 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.5   0.00035      0.43      49      65 ..      23      39 ..      14      95 .. 0.66
   2 !   12.1   3.2     8e-05       0.1      46      91 ..     131     186 ..     115     207 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00035
   PF04546.8 49 eeeeeddddddededee 65
                eeee+d+dddded+d+e
  MMETSP0890-20130614|3553_1 23 EEEEDDEDDDDEDDDDE 39
                33333323333333333 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8e-05
   PF04546.8  46 eddeeeeeddddddededeee..........eseeadegpdpeearerFaelrkqy 91 
                 ++d++ +edddddd d+de++             + de++ +++a ++F +l+k +
  MMETSP0890-20130614|3553_1 131 DEDDDIDEDDDDDDVDDDENAwtiikvdknaGGISLDEHKKKKRAEKKFHKLKKRH 186
                 2233333333555555555559***99776644566899999**********9987 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5     5e-06    0.0062      23      45 ..      22      44 ..      12      92 .. 0.66
   2 ?    2.1   9.5      0.16     2e+02      14      37 ..     127     150 ..     117     159 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5e-06
   PF09026.5 23 eeedeededeedeeeddevpvps 45
                 ee+e+ded++de++dde+ + s
  MMETSP0890-20130614|3553_1 22 REEEEDDEDDDDEDDDDEIVLIS 44
                34444455555556666665544 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.16
   PF09026.5  14 sdseeeeedeeedeededeedeee 37 
                  d  +e++d +ed++d+d +d+e+
  MMETSP0890-20130614|3553_1 127 RDDGDEDDDIDEDDDDDDVDDDEN 150
                 445555556666666666666665 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.4   0.00029      0.36       5      29 ..      23      47 ..      21      79 .. 0.52
   2 ?    9.1   6.7    0.0014       1.8      10      60 ..     129     188 ..     126     213 .. 0.43

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00029
   PF11942.3  5 EAevddeeeEeeeeedeeeelseea 29
                E e+dde++++e+++de   +s+e+
  MMETSP0890-20130614|3553_1 23 EEEEDDEDDDDEDDDDEIVLISTEK 47
                4466666666666665555444443 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0014
   PF11942.3  10 deeeEee.eeedeeeelseeaefieea............eddrrhreldrrrekeeeedaeela 60 
                 d +e+++ +e+d++++ +++++    a                +h++++r ++k  + ++++  
  MMETSP0890-20130614|3553_1 129 DGDEDDDiDEDDDDDDVDDDEN----AwtiikvdknaggISLDEHKKKKRAEKKFHKLKKRHRV 188
                 4444444344444443333322....12223443444552222334444444444444455544 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   9.8    0.0016       1.9     303     387 ..      23     173 ..      14     190 .. 0.48

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0016
   PF04147.7 303 eeeedsekesaddlddefe.............................edddenfglgsaeeeeeeee.........................................................eegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeee 387
                 eeeed+  e++dd+dd+ e                             +                                                                             +g ed+d +edddd++ ++++      + d++ +  + +e ++++
  MMETSP0890-20130614|3553_1  23 EEEEDD--EDDDDEDDDDEivlisteksgnlikirefgtgkkgrkrarK------------------HwrnaenlgvsavmtkknnvkkwmgnlrtvtfligvaygcdacdlgpldnegelqifrDDGDEDDDIDEDDDDDDVDDDENAWTIIKVDKNAGGISLDEHKKKK 173
                 222222..22333333333357887777665544444333333333330..................356666677777777777777***************99999998888776665555544444444444444433311111111111112222222222211111 PP

>> PF12753.2  Nuclear pore complex subunit Nro1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00018      0.22     220     254 ..      21      56 ..      17     104 .. 0.63
   2 ?    0.9   3.2      0.12   1.5e+02     221     239 ..     131     150 ..     115     187 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00018
                 -T...................T--TCCCCCHHHHHH CS
   PF12753.2 220 Fgkeeeeeed.edsddedeeeeveleekhPlyalke 254
                 F +eee++ed +d+dd+de   +  e++  l++++e
  MMETSP0890-20130614|3553_1  21 FREEEEDDEDdDDEDDDDEIVLISTEKSGNLIKIRE 56 
                 554433333303333344444555666666777764 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.12
                 T................... CS
   PF12753.2 221 gkeeeeeededsdd.edeee 239
                 +++++++ed+d+dd +d+e+
  MMETSP0890-20130614|3553_1 131 DEDDDIDEDDDDDDvDDDEN 150
                 23344444444444433333 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.0   0.00049      0.61     357     403 ..      24      70 ..      17      92 .. 0.75
   2 ?    4.2   6.4    0.0078       9.7     280     340 ..     120     181 ..     111     216 .. 0.48

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00049
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
   PF05793.7 357 ddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrpa 403
                 ++e+d+dd+D d++d  +l+  +K  +  k ++ + ++ ++  +r+ 
  MMETSP0890-20130614|3553_1  24 EEEDDEDDDDEDDDDEIVLISTEKSGNLIKIREFGTGKKGRKRARKH 70 
                 47788888888888999999999998888888887777777776665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0078
                 XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 280 egrEedyisDdsas.endpeeredklseEeeekkeieqdedeeekeeekkeeegklskkkkk 340
                 eg  +++ +D +++ + d++++ d  +++e++ + i++d + +    ++++++   +kk  k
  MMETSP0890-20130614|3553_1 120 EGELQIFRDDGDEDdDIDEDDDDDDVDDDENAWTIIKVDKNAGGISLDEHKKKKRAEKKFHK 181
                 45555555553333033444444444444444455555444444433333333333333333 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00015      0.19     227     254 ..      23      50 ..      12      72 .. 0.78
   2 ?    1.7   1.5     0.086   1.1e+02     224     252 ..     132     160 ..     120     193 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00015
  PF01056.13 227 eseeeeeeeeeeeeeeeiDvvtvekrrs 254
                 e+ee++e++++e++++ei  ++ ek  +
  MMETSP0890-20130614|3553_1  23 EEEEDDEDDDDEDDDDEIVLISTEKSGN 50 
                 56889999999**********9999654 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.086
  PF01056.13 224 edseseeeeeeeeeeeeeeeiDvvtvekr 252
                 ed + +e++++++ +++e+   ++ v+k+
  MMETSP0890-20130614|3553_1 132 EDDDIDEDDDDDDVDDDENAWTIIKVDKN 160
                 22333555555555666666777777775 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.9    0.0013       1.6     157     202 ..      23      75 ..      14      95 .. 0.54
   2 ?    4.6   2.6    0.0048         6     134     191 ..     129     183 ..     113     202 .. 0.40

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0013
   PF02724.9 157 ksesdedeeddddeededeeqrkrsnessl........akslrrrrrrereeke 202
                 ++e+ +de+ddd+++d+++   + +++++l         k+ r+r r+ +++ e
  MMETSP0890-20130614|3553_1  23 EEEE-DDEDDDDEDDDDEIVLISTEKSGNLikirefgtGKKGRKRARKHWRNAE 75 
                 2222.2333333333344444444444333566666665555555555555544 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0048
   PF02724.9 134 esdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslr 191
                 + ded+d ++d+++++ +++e + ++  + ++++    + de ++k++ e ++ ++l+
  MMETSP0890-20130614|3553_1 129 DGDEDDDIDEDDDDDDVDDDE-NAWTIIKVDKNAGG-ISLDEHKKKKRAE-KKFHKLK 183
                 223333333333333333322.11111111111111.1111111111111.1112222 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.4    0.0097        12      12      29 ..      23      39 ..      16      92 .. 0.54
   2 ?    5.5   4.1    0.0092        11       2      76 ..     118     186 ..     117     200 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0097
   PF05320.7 12 sdddeeeeyeeeeedeed 29
                ++++++e+ ++e++d ++
  MMETSP0890-20130614|3553_1 23 EEEEDDEDDDDEDDD-DE 39
                222221111111111.11 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0092
   PF05320.7   2 edsediedyesdddeeeeyeeeeedeedaeslessdvsslkqsdykvesaseeiedaessskqvsekikaikkry 76 
                 +++ +++ + +d de+++ +e+++d++  + +++  + ++ + +           d+++++k+  +k +++kkr+
  MMETSP0890-20130614|3553_1 118 DNEGELQIFRDDGDEDDDIDEDDDDDDVDDDENAWTIIKVDKNA------GGISLDEHKKKKRAEKKFHKLKKRH 186
                 66777778888888888888887774444444444444433332......2223345666777778888888875 PP

>> PF09785.4  Prp31 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2       0.3   3.8e+02      63      89 ..      42      71 ..      18     100 .. 0.51
   2 ?    8.0   1.5    0.0026       3.2      12      33 ..     167     188 ..     166     192 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.3
   PF09785.4 63 mlgkkagg...rirltqidektkaklskkl 89
                +++++++g   +ir   + +k + +++k+ 
  MMETSP0890-20130614|3553_1 42 LISTEKSGnliKIREFGTGKKGRKRARKHW 71
                455555444455555444444444444433 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0026
   PF09785.4  12 edkkkkKRGGrraRkaKerlal 33 
                 +++kkkKR+ +++ k+K r ++
  MMETSP0890-20130614|3553_1 167 DEHKKKKRAEKKFHKLKKRHRV 188
                 689***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:01.12
# Mc/sec: 532.76
//
Query:       MMETSP0890-20130614|3549_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-29  103.1   0.0    1.4e-29  102.9   0.0    1.0  1  PF03348.10 Serine incorporator (Serinc)


Domain annotation for each model (and alignments):
>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   1.1e-33   1.4e-29     220     429 .]       1     206 [.       1     206 [. 0.78

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 1.1e-33
  PF03348.10 220 inlilcvivsivsilpkvqeanPksgLlqasvvtlYitYltwsAlssepdkecnplknksegtrkasliigllltflavlYstlraasnsssgklklsed..kveeqkkeernesreeaakaaveegsepksakddekegvkysYslFHiilflaslYvamlLTnwfspeeele...tvgstwaavwvkiisswvclllYiwtlvAPlllpdrdF 429
                 ++l++cv ++iv++         ++ Ll++++v++Y +++ ++A++  p+ +cnp+    ++   + +iigl l +l++ ++t  ++s  + ++l+ +++   ++e +++  ++++++++ +++++     +a  +  +g + + + F ++l l s Y+  +LTnw + +++++   +   + +++w  i ++wv +llY+wtl+APll+pdrdF
  MMETSP0890-20130614|3549_1   1 MTLVFCVGITIVQLTV-----SENGNLLTSAAVCAYSVFIAYTAVTRDPSSTCNPF---LQSRDILGIIIGLGLSLLSLGWTTHASTSAVA-DVLADNDStgGTHELTSNLVDDDDDAENPSSNTSATAIPEAPLECLDGGDSENVRFNLVLSLVSCYIGCVLTNWGTWQNSVSdisNPLAGRVSSWLNIGAQWVMFLLYLWTLLAPLLFPDRDF 206
                 5799********9987.....7799*******************************...566677899*************9988777777.333333333433333333344444444444444455556667788888899999********************998666551114445699******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:01.38
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|3558_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   46.8   0.0      2e-12   46.7   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    3.8e-12   45.5   1.6    4.2e-06   26.3   0.3    2.0  2  PF13374.1  Tetratricopeptide repeat
    7.3e-06   25.2   0.5      0.002   17.5   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    7.9e-06   25.1   0.1    0.00046   19.6   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    6.8e-05   22.3   0.8      0.011   15.4   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    0.00061   19.2   0.1     0.0029   17.0   0.1    1.8  1  PF13414.1  TPR repeat
    0.00065   20.1   0.1    0.00073   20.0   0.1    1.1  1  PF13432.1  Tetratricopeptide repeat
     0.0024   18.2   0.3      0.055   14.0   0.2    2.1  2  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.084   13.2   0.2       0.13   12.6   0.1    1.4  1  PF07721.9  Tetratricopeptide repeat
       0.11   12.1   0.1        1.9    8.3   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.4e-15     2e-12      23      71 ..       1      50 []       1      50 [] 0.98

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.4e-15
   PF13424.1 23 eAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylek 71
                eA  lye+a+e+  ++lg+ hpd+a+ ln la l++a+g+ydeA +++e+
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEIgEKTLGPIHPDLATRLNGLAGLLRAQGKYDEAMPLYER 50
                799*********************************************97 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.9e-07   0.00094      20      42 .]       1      23 [.       1      23 [. 0.98
   2 !   26.3   0.3     3e-09   4.2e-06       1      27 [.      24      50 .]      24      50 .] 0.95

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6.9e-07
   PF13374.1 20 eAlaleeealairrrllGddHPd 42
                eA +l+e+a +i ++ lG+ HPd
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEIGEKTLGPIHPD 23
                8*********************8 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 3e-09
   PF13374.1  1 taaalnnLAlalrargryeeAlaleee 27
                +a+ ln LA +lra+g+y+eA +l+e+
  MMETSP0890-20130614|3558_1 24 LATRLNGLAGLLRAQGKYDEAMPLYER 50
                6999*********************96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.004       5.4      19      30 ..       1      12 [.       1      15 [. 0.89
   2 !   17.5   0.0   1.5e-06     0.002       4      26 ..      28      50 .]      25      50 .] 0.92

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.004
                HHHHHHHHHHHH CS
  PF00515.23 19 eAleyyekALel 30
                eA   ye+A+e+
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEI 12
                79999******8 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyek 26
                l++l+ +++ +gkydeA   ye+
  MMETSP0890-20130614|3558_1 28 LNGLAGLLRAQGKYDEAMPLYER 50
                799999***************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.033        45      18      29 ..       2      13 ..       1      20 [. 0.66
   2 !   19.6   0.0   3.4e-07   0.00046       2      24 ..      28      50 .]      28      50 .] 0.96

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.033
   PF13176.1 18 AielyeraLalt 29
                A  lyera+++ 
  MMETSP0890-20130614|3558_1  2 AKPLYERAIEIG 13
                667888866654 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.4e-07
   PF13176.1  2 llnLarlysrlgdyekAielyer 24
                l+ La l +++g+y++A  lyer
  MMETSP0890-20130614|3558_1 28 LNGLAGLLRAQGKYDEAMPLYER 50
                788*******************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0085        12      19      30 ..       1      12 [.       1      15 [. 0.90
   2 !   15.4   0.1   7.9e-06     0.011       4      26 ..      28      50 .]      25      50 .] 0.90

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0085
                HHHHHHHHHHHH CS
  PF07719.12 19 eAleafekAlel 30
                eA+ ++e+A+e+
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEI 12
                8999******97 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 7.9e-06
                HHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafek 26
                l+ l+ +++++g+y+eA  ++e+
  MMETSP0890-20130614|3558_1 28 LNGLAGLLRAQGKYDEAMPLYER 50
                789999***************97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.1e-06    0.0029      21      62 ..       1      49 [.       1      50 [] 0.69

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.1e-06
   PF13414.1 21 eAieayekAlel........dpnnaelyynlAlaylklgkdyeeAledye 62
                eA  +ye+A+e+         p+ a  +++lA +++ +g +y+eA+  ye
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEIgektlgpiHPDLATRLNGLAGLLRAQG-KYDEAMPLYE 49
                577788888887433333334777778888999999999.5999987776 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   5.4e-07   0.00073      15      56 ..       1      50 []       1      50 [] 0.94

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.4e-07
   PF13432.1 15 eAlaaleaalala........PeaaeallllaeallrlgrldeAaallra 56
                eA +++e+a++          P+ a  l +la +l ++g++deA  l+++
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEIGektlgpihPDLATRLNGLAGLLRAQGKYDEAMPLYER 50
                69999999999999******************************988875 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.12   1.6e+02      19      33 ..       1      15 [.       1      28 [. 0.72
   2 !   14.0   0.2     4e-05     0.055       5      26 ..      29      50 .]      24      50 .] 0.88

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.12
   PF13428.1 19 eAiallrralalaPd 33
                eA  l++ra++ + +
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEIGEK 15
                588899999986654 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4e-05
   PF13428.1  5 lalarallalGdpdeAiallrr 26
                  la +l+a+G +deA+ l++r
  MMETSP0890-20130614|3558_1 29 NGLAGLLRAQGKYDEAMPLYER 50
                479*****************97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.8e-05      0.13       6      26 .]      30      50 .]      25      50 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.8e-05
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                +LA +l a+G +deA  l er
  MMETSP0890-20130614|3558_1 30 GLAGLLRAQGKYDEAMPLYER 50
                7999***********999987 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   1.4e+02      19      30 ..       1      12 [.       1      16 [. 0.86
   2 ?    8.3   0.0    0.0014       1.9       7      25 ..      31      49 ..      25      50 .] 0.83

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.11
                HHHHHHH---HH CS
   PF13181.1 19 kAkeylekalel 30
                +Ak  +e+a+e+
  MMETSP0890-20130614|3558_1  1 EAKPLYERAIEI 12
                68999****998 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0014
                ---HHHHTT-HHHHHHHHH CS
   PF13181.1  7 lGdiYrqlGdydkAkeyle 25
                l+ ++r  G+yd+A+  +e
  MMETSP0890-20130614|3558_1 31 LAGLLRAQGKYDEAMPLYE 49
                6668999*******99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|3556_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:01.01
# Mc/sec: 344.03
//
Query:       MMETSP0890-20130614|3568_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   15.5   0.7     0.0091   15.3   0.5    1.1  1  PF05757.6 Oxygen evolving enhancer protein 3 (PsbQ)


Domain annotation for each model (and alignments):
>> PF05757.6  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   6.7e-07    0.0091       7      76 ..      17      80 ..      10      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.7e-07
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX--S-EE--------------- CS
   PF05757.6  7 rsrvatrrsglvvrasaeeaeqqtsRravlg.slvAtalagaasaqavlaaaalikvglpdprsgnkpgtd 76
                + +v+ +rs +vv+a++       sRr  l  +++++++a++ +  ++ +aa++ +v+ + p+ ++k g  
  MMETSP0890-20130614|3568_1 17 QAPVTIQRSSTVVSAQE-------SRRGFLEsAATGLPVAALVAFPQMSQAAKPPQVESMLPPRKGKSGQI 80
                56777889999999999.......999999604455667889999999999*********99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.32s 00:00:00.67 Elapsed: 00:00:00.73
# Mc/sec: 298.72
//
Query:       MMETSP0890-20130614|3563_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   40.4   0.0    2.2e-10   39.9   0.0    1.2  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.3e-08   32.6   0.0    8.3e-08   32.0   0.0    1.2  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    7.6e-07   28.7   0.0    1.1e-06   28.2   0.0    1.2  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   4.8e-14   2.2e-10      28      70 .]      12      55 ..       7      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 4.8e-14
                EEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17 28 iklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70
                +  ++d  +gr++gfafV F++ ++a++Al+ ++gk+++gr+++
  MMETSP0890-20130614|3563_1 12 CISPIDrDRGRPRGFAFVSFADARQADDALNDMDGKEFDGRRIR 55
                55678889*********************************996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.8e-11   8.3e-08      33      69 .]      17      55 ..      11      55 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.8e-11
   PF14259.1 33 nkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69
                ++d gr+rgfAfv f+++ +A+ al++++ + ++gr ir
  MMETSP0890-20130614|3563_1 17 DRDrGRPRGFAFVSFADARQADDALNDMDgKEFDGRRIR 55
                6788************************99*******97 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.4e-10   1.1e-06      20      54 ..      22      57 ..      12      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.4e-10
   PF13893.1 20 k.ggqAfvefdtveaArkakeylngvklygktLkve 54
                  +g+Afv f+++++A+ a++ ++g+ ++g++++v 
  MMETSP0890-20130614|3563_1 22 RpRGFAFVSFADARQADDALNDMDGKEFDGRRIRVT 57
                258*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:01.70
# Mc/sec: 351.00
//
Query:       MMETSP0890-20130614|3571_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.1e-143  476.0   0.2   4.8e-143  475.8   0.2    1.0  1  PF00490.16 Delta-aminolevulinic acid dehydratase


Domain annotation for each model (and alignments):
>> PF00490.16  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  475.8   0.2  3.5e-147  4.8e-143       3     324 .]      58     376 ..      56     376 .. 0.99

  Alignments for each domain:
  == domain 1    score: 475.8 bits;  conditional E-value: 3.5e-147
                 ---GGGGTSSHHHHHHH-S----GGGEE-EEEEE-----EEEETTEE-EEEEEHHHHHHHHHHHHH------EEE---SS..------GGG-----HHHHHHHHHHHSTTS--EEEE-SCCCS-------B..----B-CHHHHHHHHHHHHHHHH----EEEE-S--------HHHHHHHTT-TT---EEEEEEB--TT---HHHHTT--------TTTSB-TT-SHHHHHHHHHHHH----EEEEE---TTHHHHHHHHHHH-S-EEEEE----HHHHHHHHH-----HHHHHHHHHHHHHH----EEEETTHHHHHHHH CS
  PF00490.16   3 ssrlrrlrksealrelvretslspsdlilplfvkegekekeeiksmpgverlsvdelvkeveelvelgikavilFgvieeekkdeagsealnedglvqrairaikeevpellvitDvcldeYtshGhcGilkeeegevlndetlellakqavsqaeaGadvvaPsdmmDgrvaaireaLdeegfedvailsyaaKyaSafYgPFrdaaesapkfgdrktYqmdpanarealrevelDieeGADivmvkPalpYLDiirevkeefklpvaaYqvsGEYamikaaaekgwldekkvvlEsllsikRaGadliltyfakeaakll 324
                  sr+rr+rksea+r++v+et+ls+++l+ p+f++++++   +i smpg++r++++++++ ve+ +++g++++ilF+ +e++ k+++g+e++n dglvqr++raike++p+ +++tD++ld+Y+++Gh+Gi+   +g++ nd t+++l+kqavs+a+aGad+vaPsdmmDgr+aair aLd+egf+dv+i++y+aKyaSafYgPFrda++s+p fgd+ktYq+dpan real e++lD++eGAD+++vkP++pYLDii++++++++lp+aaY+vsGEYam+kaaa +gw+dek+vvlE+ll+++RaGad+iltyfa++aa++l
  MMETSP0890-20130614|3571_1  58 LSRPRRNRKSEAMRKMVAETTLSAANLMQPIFIHDKDE-IVDIGSMPGQSRHGMNSMLDIVEKGLAVGVQSFILFPKVEDDLKSNYGQESYNMDGLVQRSVRAIKEKFPQAIIVTDIALDPYSDQGHDGIV--IDGKIVNDMTIQQLCKQAVSHARAGADIVAPSDMMDGRIAAIRMALDAEGFTDVSIIAYTAKYASAFYGPFRDALDSHPGFGDKKTYQQDPANGREALIEAALDASEGADMLLVKPGMPYLDIIHRLRTAADLPIAAYHVSGEYAMLKAAALNGWIDEKAVVLETLLCFRRAGADVILTYFATQAATWL 376
                 68********************************9987.89******************************************************************************************..68*****************************************************************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:01.05
# Mc/sec: 869.54
//
Query:       MMETSP0890-20130614|3578_1  [L=1225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-62  208.5   0.0    1.5e-61  207.7   0.0    1.4  1  PF00176.18 SNF2 family N-terminal domain
    7.7e-16   57.6   0.0    1.8e-15   56.3   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
      5e-06   25.9   0.0    1.6e-05   24.2   0.0    1.9  1  PF00270.24 DEAD/DEAH box helicase
    0.00044   20.0   0.0        1.3    8.7   0.0    2.8  2  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.0   4.3e-65   1.5e-61       1     295 [.      85     421 ..      85     422 .. 0.84

  Alignments for each domain:
  == domain 1    score: 207.7 bits;  conditional E-value: 4.3e-65
                 TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHHSTT--EEE-----HHHHHHHHHHS............--------SEEEE-TTHHHHTT...TT----EEEEEEETTGGGG--SSSHHHHHHTTS........EEEEE--B-----SS-SHHHHHHHHHH---..----------.....-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHH............HHHHH---------............................-----.....THHHHHHHHHHHHH-GGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18   1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekhagalrvvvyhgqtrerskvaesmv............sakqlatadvvittYdvlkkekkeesllkkvewkrvvlDEahrlknsksklaeallkl........ktkkrlcltGTPiqnnleelyaLlnFlrpr..pltelrvfekaferpaeekskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYn............klltkaravlkkav............................eaaeeevrlksvltelqqlrkicnhpel 295
                 yQ +gvawll++ +k+    g+iLademGLGKT q+   i+ ++ + +++  p+L+V+P+s++ +W++e++ +  +l+v++yh+  r   +++++              ++++++++++++ttYd + ++    ++l+++ w  +v+DEahrlkn+k +l+e l ++          ++r++ltGTP+qn+ +el++L+nF++ +  ++   +  e + e+  + +++e+++ l++ ++p llrr+k+dv++++p k+e+++ v+l+  qk +Y+                                                      + a   + +  + ++ ++lrk+cnhp l
  MMETSP0890-20130614|3578_1  85 YQERGVAWLLDCREKER---GCILADEMGLGKTAQICLYIW-RMCQRRNTDRPVLIVAPLSTIGHWERELKAW-TPLEVCMYHDGGRDARDLRRHYEwwpmvnglpcpdANRTQTKFHILVTTYDEVIRDA---DQLETISWAACVVDEAHRLKNEKGRLIESLGAVltlgtkqrPYQHRVLLTGTPLQNDTKELWTLMNFIEHDegIFARGEAREAYDENFGKMETAEQVHLLQQAISPHLLRRVKEDVAQDIPVKRETIIDVELTFAQKRYYRalyernisalavL------------KrtntesndgtnpegtstlaataalstssSTASLGSAMPTMNNLSMELRKCCNHPLL 421
                 9************9988...*********************.8998899999********************9.99*********99998777776679999******999999**************999...************************999987663355765555689***********************87521666555555555555889999***********************************************5554444444330............244466666667777777777777666434444444555999999*********976 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   5.4e-19   1.8e-15       2      78 .]     500     579 ..     499     579 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 5.4e-19
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +++ + +++ +l+g+   +er++ +++fn+ +     +l++t++++ Gi+l ++++Vi++d ++++++ iQ++ R++R g
  MMETSP0890-20130614|3578_1 500 YCQYRSYSYEVLDGRVRGDERQKSIDRFNDPNAnsfLMLLSTRAGGVGINLVAADTVIIYDSDWNPQNDIQAMARCHRLG 579
                 5678899*********************998888889*****************************************76 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.8e-09   1.6e-05      14     171 ..     100     269 ..      83     271 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 4.8e-09
                 S-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH.................T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT...SE.EEEEESS-T.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxxx.xxxx RF
  PF00270.24  14 ggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl.................dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr...lq.vivlSATlp.kdvk 171
                 ++ +++a e G GKT+ +++ + +++ +   ++t+  +livaP+  +     ++lk ++    l+v++++ g   ard ++                   + + +i+v+T++ ++      +l++ +    V+DEa+rl + + +  ++++   l  g++    q  ++l+ T+  +d k
  MMETSP0890-20130614|3578_1 100 ERGCILADEMGLGKTAQICLYIWRMCQR---RNTDRPVLIVAPLSTIG-HWERELKAWT---PLEVCMYHDGGRDARDLRRHYewwpmvnglpcpdanrtQTKFHILVTTYDEVIRDAD--QLETISWAACVVDEAHRLKN-EKGRLIESLGAVLTLGTKqrpYQhRVLLTGTPLqNDTK 269
                 477999******************9977...46999*******98764.4566666666...47999998888877666666577899999999999988889*********9988877..467788889***********.66665666444433332223444578888887656655 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00038       1.3       3      61 ..      81     142 ..      79     157 .. 0.86
   2 !    8.0   0.0   0.00059         2     149     182 ..     220     263 ..     181     265 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00038
  PF04851.10   3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprke 61 
                 klr+yQe+ +  ll+ +eke   +  +++ + G GKT  ++  i+r+ +       +l+++p  +
  MMETSP0890-20130614|3578_1  81 KLRSYQERGVAWLLDCREKE---RGCILADEMGLGKTAQICLYIWRMCQrrntdrPVLIVAPLST 142
                 79************999888...77777889******9988788888888999999999999655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00059
  PF04851.10 149 viiiDEaHrlsakkkyreile...........fkkafllglTATp 182
                   ++DEaHrl  +k  r i             + ++ ++ lT+Tp
  MMETSP0890-20130614|3578_1 220 ACVVDEAHRLKNEK-GRLIESlgavltlgtkqRPYQHRVLLTGTP 263
                 789********999.444444677777888888888999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       643  (0.0470304); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.61u 0.39s 00:00:02.00 Elapsed: 00:00:01.23
# Mc/sec: 2386.62
//
Query:       MMETSP0890-20130614|3582_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-19   69.4   2.4    1.8e-19   69.1   1.7    1.2  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.053   13.4   0.1       0.06   13.3   0.0    1.2  1  PF10621.4  F420H2 dehydrogenase subunit FpoO


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   1.7   2.6e-23   1.8e-19       3      78 .]      35     108 ..      33     108 .. 0.94

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 2.6e-23
                 ESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCE.HCCTTHHHHHHHTTSSEEECCCSBGG CS
  PF00111.22   3 idgkevevevadgettlldaaeenggidipysCggggCgtClvevnegev.qsdetelegeeldegklrlaCqtivt 78 
                  dg+e+ +e++++ + +ld aee  g+d+pysC++g+C++C  +v++g+v qsd+++l+++++++g++ l+C++++t
  MMETSP0890-20130614|3582_1  35 EDGTETVIECPEDVY-ILDQAEEE-GLDLPYSCRAGACSSCCGKVTAGTVdQSDQSFLDDSQMADGFV-LTCVAYPT 108
                 58*************.88888877.9************************9999***********999.*****997 PP

>> PF10621.4  F420H2 dehydrogenase subunit FpoO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.8e-06      0.06      15      76 ..      16      83 ..       9     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.8e-06
   PF10621.4 15 ipvrvfrprlklaypegvwkglceacldsakktyl.evnkde.....ascrkgkcalcgkktrvydve 76
                 pv v+r++ kl+y   +     e+ +++ ++ y  + +++e      scr g c+ c  k     v+
  MMETSP0890-20130614|3582_1 16 APVSVLRAQTKLSYAVTLVEDGTETVIECPEDVYIlDQAEEEgldlpYSCRAGACSSCCGKVTAGTVD 83
                69*******************************9523333333333369******9988776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.45s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 400.49
//
Query:       MMETSP0890-20130614|3588_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-34  117.2   4.5    8.6e-19   67.1   0.5    2.0  2  PF13424.1  Tetratricopeptide repeat
    6.9e-24   82.8   3.1      3e-11   42.6   0.3    3.0  3  PF13374.1  Tetratricopeptide repeat
    2.1e-12   46.3   2.2    2.7e-10   39.6   1.0    2.1  2  PF13414.1  TPR repeat
    7.6e-12   44.1  11.1    6.2e-06   25.4   0.4    3.1  3  PF00515.23 Tetratricopeptide repeat
    6.3e-11   41.1   2.4    6.5e-05   22.3   0.1    3.1  3  PF13176.1  Tetratricopeptide repeat
    1.9e-09   36.6  11.8    3.7e-05   23.1   0.7    3.1  3  PF07719.12 Tetratricopeptide repeat
    1.6e-08   34.8   1.5      2e-07   31.3   0.2    2.2  2  PF13432.1  Tetratricopeptide repeat
    1.6e-07   30.8   1.1      0.016   15.2   0.2    2.5  2  PF13431.1  Tetratricopeptide repeat
    8.7e-05   22.7   0.8     0.0006   20.1   0.3    2.3  2  PF13428.1  Tetratricopeptide repeat
    0.00022   21.2   2.7     0.0011   19.1   0.3    2.6  2  PF07721.9  Tetratricopeptide repeat
    0.00029   19.9   0.1    0.00058   18.9   0.1    1.6  1  PF10516.4  SHNi-TPR
     0.0003   20.7   0.3    0.00054   19.9   0.2    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0011   19.2   0.2       0.52   10.6   0.0    2.1  2  PF14357.1  Domain of unknown function (DUF4404)
  ------ inclusion threshold ------
       0.05   13.2   4.8        3.4    7.5   0.1    3.2  3  PF13181.1  Tetratricopeptide repeat
      0.053   13.8   2.4        1.3    9.4   0.2    2.9  3  PF13174.1  Tetratricopeptide repeat
       0.08   11.7   0.0      0.084   11.7   0.0    1.1  1  PF04910.9  Transcriptional repressor TCF25
       0.15   12.0   1.2        8.8    6.4   0.0    3.2  4  PF01535.15 PPR repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   1.1e-18   8.8e-16      21      76 ..       3      59 ..       3      61 .. 0.97
   2 !   67.1   0.5   1.1e-21   8.6e-19       8      68 ..      32      93 ..      31      94 .] 0.97

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 1.1e-18
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
                yd+A  +ye al l  +e+g+dhp +a al  la+ +l +g+yd+A++++e+Al+i+
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECALRLfEEEFGPDHPKVAEALSGLAEMLLLQGNYDQAKQLHERALKIR 59
                9*************999***************************************8 PP

  == domain 2    score: 67.1 bits;  conditional E-value: 1.1e-21
   PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAley 68
                l+ la++l+ +g+yd+A +l e+al++ l++lg++hpd+a +lnnla+ + ++g+ydeA+++
  MMETSP0890-20130614|3588_1 32 LSGLAEMLLLQGNYDQAKQLHERALKIrLETLGPNHPDVAASLNNLAQSWCYQGKYDEAKPL 93
                889********************************************************976 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-06    0.0028      18      41 ..       3      26 ..       2      27 .. 0.97
   2 !   42.6   0.3   3.8e-14     3e-11       1      42 []      28      69 ..      28      69 .. 0.98
   3 !   22.5   0.0   8.2e-08   6.6e-05       1      24 [.      70      93 ..      70      94 .] 0.96

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.5e-06
   PF13374.1 18 yeeAlaleeealairrrllGddHP 41
                y++A +++e al + ++ +G+dHP
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECALRLFEEEFGPDHP 26
                9**********************9 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 3.8e-14
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a al+ LA +l  +g+y++A +l+e+al ir + lG++HPd
  MMETSP0890-20130614|3588_1 28 VAEALSGLAEMLLLQGNYDQAKQLHERALKIRLETLGPNHPD 69
                799**************************************8 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 8.2e-08
   PF13374.1  1 taaalnnLAlalrargryeeAlal 24
                +aa+lnnLA   + +g+y+eA +l
  MMETSP0890-20130614|3588_1 70 VAASLNNLAQSWCYQGKYDEAKPL 93
                89*******************997 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00076      0.62      19      44 ..       3      36 ..       2      37 .. 0.73
   2 !   39.6   1.0   3.3e-13   2.7e-10       2      57 ..      28      90 ..      27      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00076
   PF13414.1 19 ydeAieayekAleld.....pnnae...lyynlA 44
                yd+A  +ye Al+l      p++++   ++++lA
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECALRLFeeefgPDHPKvaeALSGLA 36
                9************944455555544333999888 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 3.3e-13
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeA 57
                +Aeal  l+++l+ +g+yd+A ++ e+Al+++     pn+++    ++nlA+++  +g +y+eA
  MMETSP0890-20130614|3588_1 28 VAEALSGLAEMLLLQGNYDQAKQLHERALKIRletlgPNHPDvaaSLNNLAQSWCYQG-KYDEA 90
                79****************************966667788777777*************.6***9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.4   0.00042      0.34      17      31 ..       3      17 ..       3      20 .. 0.91
   2 !   25.4   0.4   7.8e-09   6.2e-06       1      30 [.      29      58 ..      29      59 .. 0.97
   3 !   15.0   0.1   1.6e-05     0.013       1      21 [.      71      91 ..      71      93 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00042
                HHHHHHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekALeln 31
                yd+A  +ye AL+l 
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECALRLF 17
                9***********996 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 7.8e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a+al +l+ ++l +g+yd+A +  e+AL++
  MMETSP0890-20130614|3588_1 29 AEALSGLAEMLLLQGNYDQAKQLHERALKI 58
                89**************************98 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHHHHHTT-HHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAl 21
                a +l+nl++   ++gkydeA 
  MMETSP0890-20130614|3588_1 71 AASLNNLAQSWCYQGKYDEAK 91
                6789****************5 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.22   1.8e+02      14      32 ..       2      20 ..       1      24 [. 0.74
   2 !   22.3   0.1   8.1e-08   6.5e-05       1      34 [.      31      64 ..      31      66 .. 0.91
   3 !   15.5   0.0   1.2e-05    0.0093       1      18 [.      73      90 ..      73      94 .] 0.91

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.22
   PF13176.1 14 dyekAielyeraLaltkdp 32
                +y+kA  +ye aL+l +++
  MMETSP0890-20130614|3588_1  2 YYDKAKPHYECALRLFEEE 20
                6999999999877665555 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 8.1e-08
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpld 34
                al+ La++   +g+y++A +l+eraL+++ + l+
  MMETSP0890-20130614|3588_1 31 ALSGLAEMLLLQGNYDQAKQLHERALKIRLETLG 64
                7999**********************99988776 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 1.2e-05
   PF13176.1  1 allnLarlysrlgdyekA 18
                +l+nLa+ ++ +g+y++A
  MMETSP0890-20130614|3588_1 73 SLNNLAQSWCYQGKYDEA 90
                79***************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4     0.047        38      17      32 ..       3      18 ..       2      20 .. 0.88
   2 !   23.1   0.7   4.6e-08   3.7e-05       1      30 [.      29      58 ..      29      60 .. 0.96
   3 !   15.8   0.1     1e-05    0.0081       1      21 [.      71      91 ..      71      93 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.047
                HHHHHHHHHHHHHH-T CS
  PF07719.12 17 yeeAleafekAleldP 32
                y++A+ ++e Al+l+ 
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECALRLFE 18
                9********9999976 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4.6e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                aeal  l++ ++ +g+y++A+++ e+Al++
  MMETSP0890-20130614|3588_1 29 AEALSGLAEMLLLQGNYDQAKQLHERALKI 58
                89**************************97 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 1e-05
                HHHHHHHHHHHHHTT-HHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAl 21
                a  l+nl++++ ++g+y+eA+
  MMETSP0890-20130614|3588_1 71 AASLNNLAQSWCYQGKYDEAK 91
                5679****************7 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.2   2.5e-10     2e-07      13      63 ..       3      66 ..       3      68 .. 0.87
   2 ?    2.4   0.0      0.29   2.4e+02       8      18 ..      82      92 ..      75      93 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 2.5e-10
   PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....alaPd 63
                yd+A +++e al+l+        P+ aeal +lae+ll +g++d+A +l ++al      l+P+
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECALRLFeeefgpdhPKVAEALSGLAEMLLLQGNYDQAKQLHERALkirleTLGPN 66
                7899999999999999999988999****************************96655555555 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.29
   PF13432.1  8 lraGdydeAla 18
                 ++G+ydeA +
  MMETSP0890-20130614|3588_1 82 CYQGKYDEAKP 92
                689*****976 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.7e-05     0.029       9      34 .]      25      50 ..      20      50 .. 0.92
   2 !   15.2   0.2     2e-05     0.016       9      33 ..      67      91 ..      51      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.7e-05
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAeq 34
                +P+ a+a+  LAe ll +G++++A+q
  MMETSP0890-20130614|3588_1 25 HPKVAEALSGLAEMLLLQGNYDQAKQ 50
                67789*******************98 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2e-05
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a ++nnLA+ ++ +G+++eA+
  MMETSP0890-20130614|3588_1 67 HPDVAASLNNLAQSWCYQGKYDEAK 91
                6888*******************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   7.5e-07    0.0006       1      38 [.      29      71 ..      29      80 .. 0.78
   2 ?    1.3   0.0      0.79   6.4e+02       4      21 ..      74      91 ..      71      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 7.5e-07
   PF13428.1  1 peallalarallalGdpdeAiallrrala.....laPddaeal 38
                +eal  la+ ll +G++d+A +l +ral+     l+P+++++ 
  MMETSP0890-20130614|3588_1 29 AEALSGLAEMLLLQGNYDQAKQLHERALKirletLGPNHPDVA 71
                689************************9977777455555443 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.79
   PF13428.1  4 llalarallalGdpdeAi 21
                l  la+    +G +deA 
  MMETSP0890-20130614|3588_1 74 LNNLAQSWCYQGKYDEAK 91
                56799999999****996 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   1.3e-06    0.0011       1      23 [.      29      51 ..      29      54 .. 0.90
   2 ?    1.7   0.0      0.52   4.2e+02       4      20 ..      74      90 ..      71      93 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.3e-06
                HHHH---HHHHHH-------HHH CS
   PF07721.9  1 arallaLArallalGdldeAral 23
                a al++LA+ ll++G++d+A +l
  MMETSP0890-20130614|3588_1 29 AEALSGLAEMLLLQGNYDQAKQL 51
                579*****************876 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.52
                H---HHHHHH------- CS
   PF07721.9  4 llaLArallalGdldeA 20
                l +LA+ +  +G +deA
  MMETSP0890-20130614|3588_1 74 LNNLAQSWCYQGKYDEA 90
                56777777779999999 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   7.2e-07   0.00058       1      37 [.      29      65 ..      29      66 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 7.2e-07
   PF10516.4  1 AdvydlLGEiSlEnEnFpqAveDlrkaLeLreqllpp 37
                A+ +  L+E+ l ++n++qA +  ++aL++r+++l p
  MMETSP0890-20130614|3588_1 29 AEALSGLAEMLLLQGNYDQAKQLHERALKIRLETLGP 65
                5666679**************************9976 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   6.7e-07   0.00054      12      77 ..      10      90 ..       1      93 [. 0.67

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 6.7e-07
                HHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHH CS
   PF12895.2 12 aekllaespk.....dp.edaylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeA 77
                +e +l +  +      p  +++l  lA+ l+l+g+y++A +l ++      + l +++++ +     lA++   +gkydeA
  MMETSP0890-20130614|3588_1 10 YECALRLFEEefgpdHPkVAEALSGLAEMLLLQGNYDQAKQLHERalkirlETLGPNHPDVAAslnNLAQSWCYQGKYDEA 90
                44444443333333212344455567*************999988*99998777778844444334568**999******9 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00065      0.52      55      80 ..      14      39 ..       4      43 .. 0.84
   2 !    7.1   0.0    0.0078       6.2      46      79 ..      46      80 ..      40      81 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00065
   PF14357.1 55 lneaverFeaeHPklagtlrnildsL 80
                l+   e+F  +HPk+a++l  ++++L
  MMETSP0890-20130614|3588_1 14 LRLFEEEFGPDHPKVAEALSGLAEML 39
                5556799**************99998 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0078
   PF14357.1 46 aedeslaerlne.averFeaeHPklagtlrnilds 79
                ++ ++l er  +  +e    +HP++a+ l+n+++s
  MMETSP0890-20130614|3588_1 46 DQAKQLHERALKiRLETLGPNHPDVAASLNNLAQS 80
                55666666666657888999************986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.078        63      17      28 ..       3      14 ..       2      17 .. 0.83
   2 ?    7.5   0.1    0.0043       3.4       6      30 ..      34      58 ..      29      60 .. 0.80
   3 ?    3.0   0.0      0.11        91       3      21 ..      73      91 ..      71      92 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.078
                HHHHHHHHH--- CS
   PF13181.1 17 ydkAkeylekal 28
                ydkAk ++e al
  MMETSP0890-20130614|3588_1  3 YDKAKPHYECAL 14
                9*******9666 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0043
                T---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  6 nlGdiYrqlGdydkAkeylekalel 30
                 l++ ++  G+yd+Ak+  e+al++
  MMETSP0890-20130614|3588_1 34 GLAEMLLLQGNYDQAKQLHERALKI 58
                577778889*******999999887 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.11
                -TTT---HHHHTT-HHHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAk 21
                +++nl++     G+yd+Ak
  MMETSP0890-20130614|3588_1 73 SLNNLAQSWCYQGKYDEAK 91
                5667777777789****98 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.1   1.7e+03      11      24 ..       4      18 ..       2      19 .. 0.60
   2 ?    9.4   0.2    0.0017       1.3       1      22 [.      30      51 ..      30      58 .. 0.83
   3 ?    2.7   0.0      0.24   1.9e+02       5      20 ..      76      91 ..      76      93 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 2.1
                HHHH.HHHHHHHHHH CS
   PF13174.1 11 yklg.dtdeAleale 24
                +k++ +++ Al+++e
  MMETSP0890-20130614|3588_1  4 DKAKpHYECALRLFE 18
                343336777888887 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0017
                HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  1 dAlyklalsyyklgdtdeAlea 22
                +Al  la+ ++ +g++d+A+++
  MMETSP0890-20130614|3588_1 30 EALSGLAEMLLLQGNYDQAKQL 51
                689999*9999999******96 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAl 20
                +la+s   +g++deA+
  MMETSP0890-20130614|3588_1 76 NLAQSWCYQGKYDEAK 91
                5788888888****97 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001     0.084      40      68 ..      29      57 ..      23      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
   PF04910.9 40 vdtLlqlsevyreqgdfevAndlieraLf 68
                 ++L  l+e++  qg++ +A +l eraL 
  MMETSP0890-20130614|3588_1 29 AEALSGLAEMLLLQGNYDQAKQLHERALK 57
                578899*********************95 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.8   6.4e+02      16      25 ..      10      19 ..       9      19 .. 0.85
   2 ?   -1.7   0.0       4.2   3.4e+03      17      27 ..      29      39 ..      27      41 .. 0.72
   3 ?    2.0   0.0      0.28   2.3e+02      13      25 ..      42      54 ..      32      60 .. 0.82
   4 ?    6.4   0.0     0.011       8.8       2      19 ..      73      90 ..      72      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.8
  PF01535.15 16 leeAlelfke 25
                +e Al+lf+e
  MMETSP0890-20130614|3588_1 10 YECALRLFEE 19
                678*****98 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 4.2
  PF01535.15 17 eeAlelfkeMk 27
                 eAl+ + eM+
  MMETSP0890-20130614|3588_1 29 AEALSGLAEML 39
                57888788885 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.28
  PF01535.15 13 aGkleeAlelfke 25
                 G+++ A +l+++
  MMETSP0890-20130614|3588_1 42 QGNYDQAKQLHER 54
                69999**999987 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.011
  PF01535.15  2 tynslIsgyckaGkleeA 19
                + n l ++ c  Gk++eA
  MMETSP0890-20130614|3588_1 73 SLNNLAQSWCYQGKYDEA 90
                67999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.94
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|3592_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-14   53.0   0.0    2.5e-14   52.9   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    5.1e-08   32.4   0.0    6.4e-08   32.1   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   3.6e-18   2.5e-14      17      71 ..       3      57 ..       1      58 [] 0.83

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 3.6e-18
   PF13306.1 17 itipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipsslts 71
                + +p  +t+Ig+ +F++c+sl+++ lp  lt+ig+yaF +c+slt++t+p  lt+
  MMETSP0890-20130614|3592_1  3 LILPAGLTTIGDGVFCRCNSLTHLVLPAGLTTIGDYAFHGCTSLTELTLPAGLTT 57
                6788889999999999998899999999999999999999999999999888775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   9.3e-12   6.4e-08       6      56 ..       3      51 ..       2      53 .. 0.94

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 9.3e-12
   PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                L+L    l++i+dg+F ++++L++L L    l++i + af+g++sL+eL L
  MMETSP0890-20130614|3592_1  3 LILPAG-LTTIGDGVFCRCNSLTHLVLP-AGLTTIGDYAFHGCTSLTELTL 51
                667777.9********************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.52
# Mc/sec: 267.29
//
Query:       MMETSP0890-20130614|3595_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   10.7   4.6       0.16   10.5   3.2    1.0  1  PF09710.5  Treponema clustered lipoprotein (Trep_dent_lipo)
       0.15   11.5   1.4        0.2   11.1   0.9    1.3  1  PF01427.12 D-ala-D-ala dipeptidase
       0.48   10.2   7.4        2.1    8.2   0.2    2.7  3  PF11455.3  Protein  of unknown function (DUF3018)
        1.2    8.4   8.2         10    5.5   0.1    3.5  4  PF02260.15 FATC domain
        1.3    8.8   4.8       0.66    9.8   1.7    1.8  2  PF05377.6  Flagella accessory protein C (FlaC)
        5.8    7.0  10.7        1.1    9.3   4.0    1.8  2  PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF09710.5  Treponema clustered lipoprotein (Trep_dent_lipo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.2     7e-05      0.16      25      88 ..      15      79 ..       6      91 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7e-05
   PF09710.5 25 qkevrakvvskaviekkene.vlskeeededvktPelikeleekkayeeslkklrlelDkkdkvl 88
                +++v+  +v ++  ek+++e v +ke+ +e+vk     ke  e+kaye +l k+ +e   ++++ 
  MMETSP0890-20130614|3595_1 15 EAQVQELIVANTTAEKQIQElVVAKERAEEQVKDALTTKEAAEQKAYEINLAKVSAENRAQETLV 79
                233444456777777776662789***********9******************99987777655 PP

>> PF01427.12  D-ala-D-ala dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   8.9e-05       0.2      43     105 ..      15      77 ..       2      92 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.9e-05
  PF01427.12  43 kelaeallkakavaaiagqqlllwdayrpksaqdglqlwaavPeqklviekqvyniervenin 105
                 ++  ++l +a++ a+ + q+l++    ++++++d+l + +a  ++++ i+  +   e+ ++ +
  MMETSP0890-20130614|3595_1  15 EAQVQELIVANTTAEKQIQELVVAKERAEEQVKDALTTKEAAEQKAYEINLAKVSAENRAQET 77 
                 444567888888888888888888888888888888888888888887777666555544433 PP

>> PF11455.3  Protein  of unknown function (DUF3018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.0     0.012        27      32      58 ..      12      38 ..       5      45 .. 0.81
   2 ?    2.7   0.2     0.047   1.1e+02      34      57 ..      28      51 ..      23      59 .. 0.74
   3 ?    8.2   0.2   0.00091       2.1      30      56 ..      66      92 ..      62      93 .] 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.012
   PF11455.3 32 faaeirrqsalvaqdaeeaevlaflde 58
                 aae++ q  +va+  +e+++++++ +
  MMETSP0890-20130614|3595_1 12 EAAEAQVQELIVANTTAEKQIQELVVA 38
                578999999999999999999998765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.047
   PF11455.3 34 aeirrqsalvaqdaeeaevlafld 57
                ae + q  +va++++e++v++ l+
  MMETSP0890-20130614|3595_1 28 AEKQIQELVVAKERAEEQVKDALT 51
                566667788999999999988775 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00091
   PF11455.3 30 pefaaeirrqsalvaqdaeeaevlafl 56
                 +++ae r q  lv ++a+ea+v++++
  MMETSP0890-20130614|3595_1 66 AKVSAENRAQETLVTKEAAEAQVQELI 92
                57899*******************998 PP

>> PF02260.15  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0059        14       5      13 ..      14      22 ..      13      26 .. 0.91
   2 ?    1.3   0.0      0.09   2.1e+02       3      13 ..      26      36 ..      24      37 .. 0.85
   3 ?   -3.0   0.0         2   4.6e+03       6      10 ..      43      47 ..      42      48 .. 0.76
   4 ?    5.5   0.1    0.0046        10       5      13 ..      84      92 ..      83      93 .] 0.89

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0059
  PF02260.15  5 veqQVdrLI 13
                +e+QV++LI
  MMETSP0890-20130614|3595_1 14 AEAQVQELI 22
                599*****9 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.09
  PF02260.15  3 LsveqQVdrLI 13
                 ++e Q+++L+
  MMETSP0890-20130614|3595_1 26 TTAEKQIQELV 36
                6899*****95 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2
  PF02260.15  6 eqQVd 10
                e+QV 
  MMETSP0890-20130614|3595_1 43 EEQVK 47
                89*96 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.0046
  PF02260.15  5 veqQVdrLI 13
                +e+QV++LI
  MMETSP0890-20130614|3595_1 84 AEAQVQELI 92
                599*****9 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   0.00029      0.66       6      41 ..      15      50 ..      10      64 .. 0.89
   2 ?   -0.9   0.0      0.62   1.4e+03      17      25 ..      82      90 ..      57      92 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00029
   PF05377.6  6 Enklsklstvvatvrkeleelsksvekikenvkdvl 41
                E ++ +l ++ +t++k+++el  + e+ +e+vkd l
  MMETSP0890-20130614|3595_1 15 EAQVQELIVANTTAEKQIQELVVAKERAEEQVKDAL 50
                788888999999*********************977 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.62
   PF05377.6 17 atvrkelee 25
                + ++++++e
  MMETSP0890-20130614|3595_1 82 EAAEAQVQE 90
                334455554 PP

>> PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.24   5.6e+02      76      94 ..       9      27 ..       2      38 .. 0.50
   2 ?    9.3   4.0   0.00048       1.1      17      66 ..      37      87 ..      33      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.24
                -HHHHHHHHHHHHHHHHHH CS
   PF08028.6 76 tpeeraearrdaalavela 94
                 ++e aea+++  ++++++
  MMETSP0890-20130614|3595_1  9 AKKEAAEAQVQELIVANTT 27
                3344444444444444433 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00048
                HHHHHHTT-B-.S----B----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08028.6 17 afierarervr.aaggaklaedpatqlrlAeaaaeldaAralleraaerle 66
                 + era+e+v+ a +++ +ae++a+ ++lA+++ae +a + l+ + a++++
  MMETSP0890-20130614|3595_1 37 VAKERAEEQVKdALTTKEAAEQKAYEINLAKVSAENRAQETLVTKEAAEAQ 87
                67899******999*****************************99998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1794  (0.131217); expected 273.4 (0.02)
Passed bias filter:                      746  (0.0545641); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 322.99
//
Query:       MMETSP0890-20130614|3586_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   72.5   0.2      7e-20   70.9   0.0    2.0  2  PF08148.7  DSHCT (NUC185) domain
    2.8e-07   30.1   0.0    7.6e-07   28.8   0.0    1.8  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF08148.7  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.35   2.4e+03      74     107 ..     207     244 ..     185     253 .. 0.51
   2 !   70.9   0.0     1e-23     7e-20       7     173 ..     322     516 ..     317     520 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.35
   PF08148.7  74 elkeiakklakveeehrl...deeeyvere.dlglvev 107
                 + ++++ +la++e ++r    +     e+e dl+++ +
  MMETSP0890-20130614|3586_1 207 SYQRLSLRLADLEAAERAlkdHRRRNEEQEeDLHVARA 244
                 34444444444444444432222223333334444444 PP

  == domain 2    score: 70.9 bits;  conditional E-value: 1e-23
   PF08148.7   7 vtlkGrvaaeisseneLlltellfsgvfeel....dpeelaallsalvfeerrddees.........dlppsl.......elaealee.lkeiakklakveeehrldeeeyveredlglvevvyeWarGksfaeileetdldeGdiVRlirRlddllrqiana.......akvigdpelaekaeeaielikRdiV 173
                  t  G ++a+++seneLl++ ++ s+ f  l    + +e aal+s+l ++ +  ++           d+ +s+       ++a+a++e l e+a+ l + + +++ld +e+  r d  +++vv+++a+G+s++e++++  ld Gd+VRl+rR+ dllr i+n          + + ++++ +a++a ++++R +V
  MMETSP0890-20130614|3586_1 322 LTPLGGLVASLKSENELLVALCVASEPFARLassgSTAEFAALVSTLACDVSDRKSVLlteeddsffDFASSMqilgpspRVADAVTElLMEVAAPLSDSQTARGLDFNELPVRVDDRVAGVVESFAEGASWTEVTASVALDDGDLVRLFRRTTDLLRSISNLddtvqlrEYIPAISAIKVAARNAANALDRSPV 516
                 4778999*******************999983333579***********9888766557766666774444447788888*****9996789**************999988889***********************************************944433322255566777777777777777777 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.1e-10   7.6e-07       6      78 .]      19      99 ..      14      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.1e-10
                ----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS........BSSHHHHHHH------TT CS
  PF00271.26  6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl........prsvtsyiQriGRtgRag 78
                 ++ +a +h++l ++ +  + + f ag  kv+ at  ++ Gi+lp+ +vVi              + + ++Q++GR+gR g
  MMETSP0890-20130614|3586_1 19 LEMGIASHHAGLLPQHKSLVESLFIAGLIKVCYATETLAAGINLPARSVVITSLSkrgdrgpeRLTASALLQMAGRAGRRG 99
                55668999*************************************999999888888877766666666**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:00.83
# Mc/sec: 1677.45
//
Query:       MMETSP0890-20130614|3609_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.62
# Mc/sec: 278.29
//
Query:       MMETSP0890-20130614|3610_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-17   63.1   3.9    9.1e-14   51.4   0.3    2.2  2  PF08238.7  Sel1 repeat
     0.0016   17.9   0.7      0.003   17.0   0.4    1.5  2  PF13414.1  TPR repeat
     0.0058   16.0   0.8       0.57    9.7   0.0    3.0  3  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.9   0.1      0.031   14.3   0.1    1.7  1  PF13431.1  Tetratricopeptide repeat
       0.08   13.5   0.5        0.1   13.2   0.3    1.2  1  PF13432.1  Tetratricopeptide repeat
      0.084   12.5   0.7       0.35   10.6   0.1    2.0  2  PF13176.1  Tetratricopeptide repeat
       0.27   11.0   1.7        1.1    9.0   1.2    2.1  1  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.8e-05     0.095      29      39 .]       2      12 ..       1      12 [. 0.92
   2 !   51.4   0.3   4.6e-17   9.1e-14       1      39 []      13      48 ..      13      48 .. 0.97

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.8e-05
   PF08238.7 29 eWyekAAeqGh 39
                eWy++AA+q++
  MMETSP0890-20130614|3610_1  2 EWYRRAADQDN 12
                8********87 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 4.6e-17
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                a+Aq+nLG  ++y++G  Gv++ +e A+eWy++AA+qGh
  MMETSP0890-20130614|3610_1 13 ADAQCNLG--ECYEKGC-GVEQSYETAVEWYRLAADQGH 48
                79******..999***9.9*******************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   1.6e-06     0.003      32      64 ..       8      43 ..       2      46 .. 0.85
   2 ?    3.3   0.0     0.028        55      17      30 ..      31      44 ..      27      53 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
   PF13414.1 32 ldpnnaelyynlAlaylklg....kdyeeAledyekA 64
                 d +na++ +nl+ +y+k g    + ye A+e y++A
  MMETSP0890-20130614|3610_1  8 ADQDNADAQCNLGECYEK-GcgveQSYETAVEWYRLA 43
                46789*************.878878899999999887 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.028
   PF13414.1 17 gdydeAieayekAl 30
                + y+ A+e y+ A 
  MMETSP0890-20130614|3610_1 31 QSYETAVEWYRLAA 44
                56899999998886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.33   6.4e+02       4       8 ..       3       7 ..       1      11 [. 0.66
   2 !    9.7   0.0   0.00029      0.57       1      13 [.      13      25 ..      13      26 .. 0.93
   3 ?    3.1   0.0     0.037        72      17      27 ..      33      43 ..      30      46 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.33
               HHHHH CS
  PF00515.23 4 lynlG 8
               +y+++
  MMETSP0890-20130614|3610_1 3 WYRRA 7
               67766 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00029
                HHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylk 13
                a+a +nlG +y k
  MMETSP0890-20130614|3610_1 13 ADAQCNLGECYEK 25
                89*********87 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.037
                HHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekA 27
                y+ A+e y+ A
  MMETSP0890-20130614|3610_1 33 YETAVEWYRLA 43
                77777777755 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.6e-05     0.031       5      25 ..       7      25 ..       3      52 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-05
   PF13431.1  5 aleldPnnadaynnLAellln 25
                a   d +nada +nL+e++ +
  MMETSP0890-20130614|3610_1  7 AA--DQDNADAQCNLGECYEK 25
                44..899************84 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   5.2e-05       0.1      21      60 ..       5      46 ..       2      51 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.2e-05
   PF13432.1 21 eaalalaPeaaeallllaeallrl....grldeAaallraalal 60
                ++a +   ++a+a+ +l+e++ +       ++ A++++r a++ 
  MMETSP0890-20130614|3610_1  5 RRAAD--QDNADAQCNLGECYEKGcgveQSYETAVEWYRLAADQ 46
                44444..55******************99999999*****9865 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.32   6.3e+02      22      33 ..       4      13 ..       2      16 .. 0.49
   2 ?   10.6   0.1   0.00018      0.35       3      27 ..      17      43 ..      15      51 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.32
   PF13176.1 22 yeraLaltkdpl 33
                y+r  a ++d  
  MMETSP0890-20130614|3610_1  4 YRR--AADQDNA 13
                555..4444443 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00018
   PF13176.1  3 lnLarlysr....lgdyekAielyeraLa 27
                +nL+++y++     + ye+A+e y+   a
  MMETSP0890-20130614|3610_1 17 CNLGECYEKgcgvEQSYETAVEWYRL--A 43
                8***********************98..4 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.2   0.00058       1.1      17      33 ..      29      45 ..       1      46 [. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00058
                HTT-HHHHHHHHHHHHH CS
  PF04212.13 17 eagkyeeAlelYkeAle 33
                 ++ ye A+e+Y+ A++
  MMETSP0890-20130614|3610_1 29 VEQSYETAVEWYRLAAD 45
                3559*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 208.71
//
Query:       MMETSP0890-20130614|3602_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-05   22.7   9.8    5.1e-05   22.7   6.8    2.9  2  PF00628.24 PHD-finger
    0.00017   20.7   7.1    0.00017   20.7   4.9    2.5  2  PF13831.1  PHD-finger
  ------ inclusion threshold ------
      0.026   14.0   1.2      0.026   14.0   0.8    3.2  3  PF14446.1  Prokaryotic RING finger family 1
      0.069   12.7  12.6       0.31   10.7   1.4    2.9  3  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
        1.3    8.7  10.3       0.39   10.3   3.7    2.5  2  PF01258.12 Prokaryotic dksA/traR C4-type zinc finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   6.8   1.9e-08   5.1e-05       1      50 [.     179     230 ..     179     231 .. 0.85
   2 ?    3.8   3.8     0.016        43       1      30 [.     251     283 ..     251     321 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.9e-08
                 SBTTTTC......TCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24   1 rCkiCge......sdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCke 50 
                 +C++Cg+      ++   +++ C++C+  +HlkC gl++     peg w C +C++
  MMETSP0890-20130614|3602_1 179 VCDVCGKptidedDEPLPDVLICESCDCEVHLKCSGLHQV----PEGIWECAKCTS 230
                 5*******997655557899******************66....5555******97 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.016
                 SBTTTTC.TCTTS-EEEBS..SSSSEEETTTSS CS
  PF00628.24   1 rCkiCge.sdeegelvlCd..gCkewfHlkClg 30 
                 rC  Cg+  + +  + +C+  +C  ++Hl+C  
  MMETSP0890-20130614|3602_1 251 RCIKCGKpGTMDAAVFFCNkiDCIGAYHLSCFA 283
                 6999***766799999**9667*********86 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   4.9   6.2e-08   0.00017       4      36 .]     198     229 ..     196     229 .. 0.95
   2 ?    0.2   0.1      0.15   4.2e+02       5      19 ..     266     282 ..     264     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 6.2e-08
   PF13831.1   4 llvCskCsvaVHasCYGvseesegeeWlCrrCe 36 
                 +l+C +C   VH +C G  + +eg  W C++C+
  MMETSP0890-20130614|3602_1 198 VLICESCDCEVHLKCSGLHQVPEG-IWECAKCT 229
                 689********************9.*******5 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.15
   PF13831.1   5 lvCs..kCsvaVHasCY 19 
                 ++C+   C  a+H sC 
  MMETSP0890-20130614|3602_1 266 FFCNkiDCIGAYHLSCF 282
                 5788667999******7 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   8.5     0.029        79       7      36 ..     179     213 ..     176     234 .. 0.83
   2 ?   14.0   0.8   9.7e-06     0.026       6      39 ..     250     285 ..     247     297 .. 0.88
   3 ?   -3.8   0.1       3.5   9.5e+03      24      27 ..     315     318 ..     312     324 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.029
   PF14446.1   7 rCavCgkklkdkd.....divvCpeCgapyHreCw 36 
                  C+vCgk+  d+d     d+++C+ C   +H +C 
  MMETSP0890-20130614|3602_1 179 VCDVCGKPTIDEDdeplpDVLICESCDCEVHLKCS 213
                 6*******999984444459**************6 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 9.7e-06
   PF14446.1   6 trCavCgkklkdkddivvCp..eCgapyHreCweea 39 
                 +rC  Cgk+ + +++++ C+  +C   yH +C+ e 
  MMETSP0890-20130614|3602_1 250 ARCIKCGKPGTMDAAVFFCNkiDCIGAYHLSCFAEL 285
                 69*****************9556*********9775 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 3.5
   PF14446.1  24 CpeC 27 
                 Cp C
  MMETSP0890-20130614|3602_1 315 CPSC 318
                 5555 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   0.00011      0.31      13      47 ..     179     217 ..     168     223 .. 0.83
   2 ?   -2.7   0.1       1.7   4.6e+03      29      35 ..     223     229 ..     220     231 .. 0.73
   3 ?    9.1   0.3   0.00034      0.93       9      47 ..     247     286 ..     242     291 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
                 B-TTT-SB-....--------EETTT--B--STT----- CS
  PF00130.17  13 fCkhCgkfl....wgkgkqglkCswCqllvHkkCfekvp 47 
                  C++Cgk+      +     l C+ C   vH kC  +++
  MMETSP0890-20130614|3602_1 179 VCDVCGKPTidedDEPLPDVLICESCDCEVHLKCSGLHQ 217
                 6999999998875447788999************87665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.7
                 -EETTT- CS
  PF00130.17  29 lkCswCq 35 
                 + C+ C 
  MMETSP0890-20130614|3602_1 223 WECAKCT 229
                 7788885 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00034
                 SS--B-TTT-SB---------EET..TT--B--STT----- CS
  PF00130.17   9 kqptfCkhCgkflwgkgkqglkCs..wCqllvHkkCfekvp 47 
                 + p++C +Cgk+  +     + C+  +C   +H +Cf  ++
  MMETSP0890-20130614|3602_1 247 QGPARCIKCGKPG-TMDAAVFFCNkiDCIGAYHLSCFAELK 286
                 6799*******98.889999***9999**********9876 PP

>> PF01258.12  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.7   0.00014      0.39       6      30 ..     180     204 ..     174     209 .. 0.93
   2 ?   -0.4   0.1      0.31   8.6e+02       5      12 ..     251     258 ..     248     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
  PF01258.12   6 CedCGEpIpeaRlralpgarlCveC 30 
                 C++CG p  +++ ++lp++++C +C
  MMETSP0890-20130614|3602_1 180 CDVCGKPTIDEDDEPLPDVLICESC 204
                 **********************999 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.31
  PF01258.12   5 sCedCGEp 12 
                 +C +CG p
  MMETSP0890-20130614|3602_1 251 RCIKCGKP 258
                 49999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       977  (0.0714599); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.81
# Mc/sec: 1674.49
//
Query:       MMETSP0890-20130614|3623_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-19   68.6   0.0    4.1e-16   58.0   0.0    2.0  2  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.019   15.0   0.2          1    9.5   0.1    2.1  2  PF09575.5 Small spore protein J (Spore_SspJ)
      0.089   10.8   0.0       0.14   10.1   0.0    1.3  1  PF11658.3 Protein of unknown function (DUF3260)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   9.1e-20   4.1e-16       1      49 []       3      51 ..       3      51 .. 0.98
   2 !   13.7   0.0   6.3e-06     0.029      17      31 ..      44      58 ..      42      59 .] 0.85

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 9.1e-20
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                Dr+ivl+av+++g+al+y+s eL+nD+eivl Av  +g+al+ as eL+
  MMETSP0890-20130614|3623_1  3 DRQIVLAAVTQYGYALEYASVELQNDREIVLIAVTEYGDALEGASQELK 51
                9********************************************9997 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 6.3e-06
   PF13475.1 17 kylseeLknDkeivl 31
                + +s eLknD+eivl
  MMETSP0890-20130614|3623_1 44 EGASQELKNDREIVL 58
                55899*********8 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.015        68      22      33 ..      17      28 ..      10      30 .. 0.89
   2 ?    9.5   0.1   0.00022         1      21      33 ..      41      53 ..      38      54 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.015
   PF09575.5 22 aLEdAgkaLkgD 33
                aLE A+ +L++D
  MMETSP0890-20130614|3623_1 17 ALEYASVELQND 28
                8********998 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00022
   PF09575.5 21 gaLEdAgkaLkgD 33
                 aLE A+++Lk+D
  MMETSP0890-20130614|3623_1 41 DALEGASQELKND 53
                59*********99 PP

>> PF11658.3  Protein of unknown function (DUF3260)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     3e-05      0.14     394     424 ..      26      56 ..      16      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3e-05
   PF11658.3 394 ksgRkvvvvlvPeHGaalrgdkmqiaGlRei 424
                 +++R++v++ v e G al+g  +++   Rei
  MMETSP0890-20130614|3623_1  26 QNDREIVLIAVTEYGDALEGASQELKNDREI 56 
                 679********************99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.61
# Mc/sec: 231.78
//
Query:       MMETSP0890-20130614|3625_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-15   56.4   0.0    2.1e-15   56.4   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    2.9e-07   30.0   0.0    3.5e-07   29.7   0.0    1.0  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     3e-19   2.1e-15      21      70 ..       3      52 ..       1      53 [] 0.67

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 3e-19
   PF13306.1 21 ssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipsslt 70
                  +t+Ig  aF++c+sl+++tlp slt+ig++aF++c+slt++t+p  lt
  MMETSP0890-20130614|3625_1  3 VGLTTIGRAAFYRCTSLTEFTLPASLTTIGNEAFYGCTSLTQLTLPAGLT 52
                55677777777777777777777777777777777777777777776654 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     5e-11   3.5e-07      13      56 ..       5      47 ..       4      49 .. 0.97

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 5e-11
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+  aF ++++L+++ L   +l++i  eaf g++sL++L L
  MMETSP0890-20130614|3625_1  5 LTTIGRAAFYRCTSLTEFTLP-ASLTTIGNEAFYGCTSLTQLTL 47
                899******************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       113  (0.00826507); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.62
# Mc/sec: 204.85
//
Query:       MMETSP0890-20130614|3627_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-17   63.3   0.0    1.2e-17   63.3   0.0    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   8.7e-22   1.2e-17       1      50 [.       4      57 ..       4      60 .] 0.86

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 8.7e-22
   PF08373.5  1 ieidGpthFyrns.gvll...gktklKrriLtalGwkvisipyfeWnelqgkee 50
                ie+dGpth++ ++ g+     g t++K riL++lGw vi++pyfeW  l +  +
  MMETSP0890-20130614|3627_1  4 IEVDGPTHYLIKGkGKQQienGRTRFKSRILRQLGWTVIHVPYFEWDTLIDASD 57
                9********777756655799*************************99955444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 256.75
//
Query:       MMETSP0890-20130614|3628_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.09   12.5   0.2      0.097   12.4   0.1    1.1  1  PF01687.12 Riboflavin kinase


Domain annotation for each model (and alignments):
>> PF01687.12  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.1e-06     0.097      91     119 ..      34      62 ..      19      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-06
                 EEEEEE-------SSHHHHHHHHHHHHHH CS
  PF01687.12  91 vellkfiRpekkFdsleaLikqIkkDiee 119
                 + l+k++R++ +F++ + + ++I++D+e 
  MMETSP0890-20130614|3628_1  34 LYLTKHVRKQIQFNEYDRIEQEIEEDVEI 62 
                 568899********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 279.57
//
Query:       MMETSP0890-20130614|3632_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-12   45.5   0.0    1.1e-11   44.6   0.0    1.4  1  PF05118.10 Aspartyl/Asparaginyl beta-hydroxylase
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.061   12.7   0.0    1.4  1  PF07883.6  Cupin domain


Domain annotation for each model (and alignments):
>> PF05118.10  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.6e-15   1.1e-11      39     163 .]     267     387 ..     260     387 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 1.6e-15
                 -EEEEEEEE----B-HHHH---HHHHHHHTT-TTT--.-----EEEEEEEE-EEEEEE----TTEEEEEE-EE------EEEETTEEE-------EEE-TTS-EEEE--SSS-EEEEEEEEE-TT CS
  PF05118.10  39 gkWkafvLksetgaqeealelvpktvalleelpeskgiaslrevrlsvlspgaeiipHrdptnlslrlHLgLatpdegcairvdeerkswreGellifDesfeHeaanesdqeRliLliDlehpe 163
                 + W+++ L +++      l ++p t+ lle+  ++ +    r+v + +l+pg + +p +d  n+ l + ++L    +g+ + v+++  s+ +Ge +ifD +++ +  n+++++  iL +D++hpe
  MMETSP0890-20130614|3632_1 267 EVWSQLLLHQASPLATGVL-RFPRTMRLLEKYKAARP--LPRNVIIGRLPPGISTEPRSDLHNYILTVQIPLRGV-DGAGLSVGGQDISYAQGEPVIFDSTYPYSFYNKGTTDAYILQVDFWHPE 387
                 6799999999998888888.9***********99888..779999*****************************6.***********************************************96 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.9e-06     0.061      32      69 ..     343     380 ..     312     382 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.9e-06
                 EEE-TEEEEE-TT-EEEE-TT-EBEEB--SSS-EEEEE CS
   PF07883.6  32 ltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 l v+g+++ + +G+ v+f+++ p  f N g+++a +l 
  MMETSP0890-20130614|3632_1 343 LSVGGQDISYAQGEPVIFDSTYPYSFYNKGTTDAYILQ 380
                 569*****************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.73
# Mc/sec: 1493.62
//
Query:       MMETSP0890-20130614|3633_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.5    6.5  11.4       0.11   11.9   0.8    2.8  2  PF12435.3 Protein of unknown function (DUF3678)


Domain annotation for each model (and alignments):
>> PF12435.3  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   2.2      0.18   2.5e+03      14      21 ..     260     267 ..     254     270 .. 0.68
   2 ?   11.9   0.8     8e-06      0.11      13      28 ..     382     394 ..     380     397 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.18
   PF12435.3  14 TstsssSs 21 
                  s+s+sSs
  MMETSP0890-20130614|3633_1 260 SSSSFSSS 267
                 35677776 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8e-06
   PF12435.3  13 pTstsssSssmlHlqc 28 
                 p   ++sSssm+H+q+
  MMETSP0890-20130614|3633_1 382 P---PTSSSSMTHHQH 394
                 6...8**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1211  (0.0885752); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 1062.73
//
Query:       MMETSP0890-20130614|3636_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-23   79.9   0.2    1.3e-22   79.4   0.2    1.2  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    5.1e-12   45.6   0.3    6.6e-12   45.2   0.2    1.1  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.025   14.2   0.3      0.092   12.4   0.2    1.8  2  PF09415.5  CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.2   2.9e-26   1.3e-22       2      65 .]      51     114 ..      50     114 .. 0.98

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 2.9e-26
                 ---HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18   2 eLPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65 
                 +LP+ar+k+Imksd+d+r+is +A++l+a+++e fi el+ +A+ +  +++rKT+++ed++ a+
  MMETSP0890-20130614|3636_1  51 DLPLARIKRIMKSDEDVRMISAEAPVLFAKACEIFILELTLRASVYSAQSSRKTLQREDVLTAI 114
                 69**********************************************************9996 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.2   1.4e-15   6.6e-12       8      73 ..      51     115 ..      47     117 .. 0.95

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.4e-15
  PF00125.19   8 klpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvr 73 
                  lp +R+ r +k++   + +isaea+v  ++a+e ++ e++  A+ ++ ++ rkt++++d+ +A++
  MMETSP0890-20130614|3636_1  51 DLPLARIKRIMKSDEDVR-MISAEAPVLFAKACEIFILELTLRASVYSAQSSRKTLQREDVLTAIH 115
                 5899**********9998.*********************************************97 PP

>> PF09415.5  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24   1.1e+03      22      38 ..      14      30 ..      13      52 .. 0.77
   2 ?   12.4   0.2     2e-05     0.092       5      61 ..      57     110 ..      53     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.24
   PF09415.5 22 kdalelvakyldiFvrE 38
                +d l  +a  l+ F rE
  MMETSP0890-20130614|3636_1 14 EDELHILADKLRAFWRE 30
                67788889999999888 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2e-05
   PF09415.5   5 larllhesfkdkktkItkdalelvakyldiFvrEAvaRaaeeaeaegqekflevedL 61 
                 ++r++++  +++   I+ +a  l ak  +iF+ E ++Ra    +++ +++ l+ ed+
  MMETSP0890-20130614|3636_1  57 IKRIMKS--DEDVRMISAEAPVLFAKACEIFILELTLRASVYSAQSSRKT-LQREDV 110
                 5565554..5566679***********************99777777777.888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.54
# Mc/sec: 576.90
//
Query:       MMETSP0890-20130614|3645_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-34  116.0   0.0    5.8e-16   57.7   0.0    2.4  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.6e-30  103.6   0.0    6.9e-17   61.1   0.0    2.4  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.2e-11   44.1   0.0    5.3e-06   26.0   0.0    2.8  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.045   11.3   0.9      0.036   11.6   0.6    1.1  1  PF05758.7  Ycf1
       0.79    7.8  12.0        1.1    7.3   8.3    1.2  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
        1.9    8.2  14.9        3.2    7.4  10.3    1.2  1  PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
          2    8.6  10.7        3.4    7.9   7.4    1.3  1  PF13882.1  C-terminal domain of Fibronectin type III
        3.1    6.2   9.8        4.2    5.7   6.8    1.1  1  PF03430.8  Trans-activating transcriptional regulator
        4.9    4.9   8.2          6    4.6   5.7    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   3.8e-19   5.8e-16       1      69 [.      79     148 ..      79     149 .. 0.98
   2 !   56.0   0.0   1.4e-18   2.1e-15       1      69 [.     179     246 ..     179     247 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 3.8e-19
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +++++Lp+  +eee+++lF   G + +++l+r    gr +g++ ++F+++e+a++A+ ++ng +lggr l
  MMETSP0890-20130614|3645_1  79 VYIEGLPYASNEEEVRRLFATAGTVSDVRLPRYqDSGRLRGYGHIDFATSEEAANAIVKMNGATLGGRYL 148
                 7******************************************************************976 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.4e-18
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +fV+nLp+d++e+ L+++F  fG+i+++++++   t+r+kg+++++F++  + e+A +   + +++gr+l
  MMETSP0890-20130614|3645_1 179 IFVKNLPYDINEDALRTVFLRFGKIVDVRIPIWnDTKRRKGVGYIQFATDYATEEAFK--SEITIRGRNL 246
                 8*******************************99***********************9..8899988876 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   4.5e-20   6.9e-17       1      69 []      79     149 ..      79     149 .. 0.98
   2 !   40.3   0.0   1.4e-13   2.1e-10       1      67 [.     179     245 ..     179     246 .. 0.92

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 4.5e-20
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 +y+ glp+ ++ee++r++f+ +g+v++vr+pr++d gr rg++ ++f++ e+A +a+ k+n   l+gr+++
  MMETSP0890-20130614|3645_1  79 VYIEGLPYASNEEEVRRLFATAGTVSDVRLPRYQDsGRLRGYGHIDFATSEEAANAIVKMNgATLGGRYLN 149
                 8**********************************************************999*******96 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.4e-13
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrt 67 
                 ++v++lp++++e+ lr  f ++gk+ +vrip   d +r++g ++++f++  + ++a+k  ++ ++gr 
  MMETSP0890-20130614|3645_1 179 IFVKNLPYDINEDALRTVFLRFGKIVDVRIPIWNDtKRRKGVGYIQFATDYATEEAFKS-EITIRGRN 245
                 89*****************************75566********************998.77777776 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.5e-09   5.3e-06       2      56 .]      94     153 ..      93     153 .. 0.95
   2 !   15.1   0.0   9.3e-06     0.014       1      51 [.     193     246 ..     193     251 .. 0.78
   3 ?   -0.4   0.0       0.6   9.1e+02      21      46 ..     243     268 ..     235     277 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.5e-09
   PF13893.1   2 yklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 ++lf+  G+v ++++ r       +g++ + f+t e+A +a+ ++ng+ l+g+ L+v ++
  MMETSP0890-20130614|3645_1  94 RRLFATAGTVSDVRLPRYQdsgrlRGYGHIDFATSEEAANAIVKMNGATLGGRYLNVAPA 153
                 789************99999**999*******************************9875 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 9.3e-06
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktL 51 
                 L++ f +fGk+++++i   +     +g+++++f+t  a + a++  ++  ++g+ L
  MMETSP0890-20130614|3645_1 193 LRTVFLRFGKIVDVRIPIWNdtkrrKGVGYIQFATDYATEEAFK--SEITIRGRNL 246
                 7899*******666664444449988*********999999998..6666666655 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.6
   PF13893.1  21 ggqAfvefdtveaArkakeylngvkl 46 
                 g+     fd+ ++ +  +++ +gv++
  MMETSP0890-20130614|3645_1 243 GRNLILDFDSSQQPKASFKTTQGVPW 268
                 466778899999999999*****998 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   2.4e-05     0.036     236     285 ..      14      65 ..       2     254 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
   PF05758.7 236 seeekkkeieaesek..krakqeqeeeeeedsslaseekedkdkideqeekk 285
                  ++ekkk++e+e+ +  k++k++++++ +e+  + ++e+++++ ++++ e +
  MMETSP0890-20130614|3645_1  14 RKKEKKKQVEEEESEppKKEKKKKKRKRDEEDAIDKKEEHKEECVEAKLEDT 65 
                 1111111111111111122222222222222222222222223233222222 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.3   0.00074       1.1     257     317 ..      10      69 ..       2      96 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00074
   PF06375.6 257 eaqeeereenkdakaeeskkssktkkkkqrkekeekkkkkkkskkrchqseeaaeesvqng 317
                 ++++ ++e++k+ + ees  + k+kkkk+rk  ee    kk+++k+ +  e ++e++v + 
  MMETSP0890-20130614|3645_1  10 DSKKRKKEKKKQVEEEESEPPKKEKKKKKRKRDEEDAIDKKEEHKE-ECVEAKLEDTVSQE 69 
                 3445566667777777777777777777777777666555555544.33444444444333 PP

>> PF09831.4  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.3    0.0021       3.2      22      88 ..       8      73 ..       2      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0021
   PF09831.4 22 kekrkkkkkakkaaaeeedeakeaveeakaekaerdrelneqrqeeaeekalkaqikqlieqnkikk 88
                k   kk+kk+kk+ + ee+e++   +e+k++k++rd+e    ++ee +e  ++a+++  ++q++i +
  MMETSP0890-20130614|3645_1  8 KVDSKKRKKEKKK-QVEEEESEPPKKEKKKKKRKRDEEDAIDKKEEHKEECVEAKLEDTVSQEAICS 73
                3333444444444.45566667777899999****************************99998865 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.4    0.0023       3.4      29     102 ..      13      88 ..       9      93 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0023
   PF13882.1  29 krsrggkysvkekedakldpeeqpkkd..eefeeysreedekelkresqssedeekkkesseDsldeygdgdeskf 102
                 kr++  k +v+e+e+++ ++e+++kk   +e ++  ++e++ke+  e++ ++  +++  +s+D++  y +g     
  MMETSP0890-20130614|3645_1  13 KRKKEKKKQVEEEESEPPKKEKKKKKRkrDEEDAIDKKEEHKEECVEAKLEDTVSQEAICSTDNITVYIEGLPYAS 88 
                 677888889*9999998888887766655777777888888888888888888888899******99988866555 PP

>> PF03430.8  Trans-activating transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.8    0.0028       4.2     121     191 ..       8      81 ..       2      93 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0028
   PF03430.8 121 avtvskrkgseldsdvdesdsskGkkkvkKpKkRekykkeviqskeklskeekyat.....eictvaptdeiakyl 191
                 +v+++k +  e++++v+e++s+   kk kK KkR++ + + i++ke+ ++e+  a          + +td+i+ y+
  MMETSP0890-20130614|3645_1   8 KVDSKK-RKKEKKKQVEEEESEP-PKKEKKKKKRKRDEEDAIDKKEEHKEECVEAKledtvSQEAICSTDNITVYI 81 
                 455544.5568888999999988.7799999************999998887655311000223455677777665 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.7    0.0039         6     129     183 ..      10      63 ..       2     113 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0039
   PF02724.9 129 eeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsne 183
                 +++ ++++e++ + ++ee+e+ ++++k+k+ ++++e++ d++e+++ee  + + e
  MMETSP0890-20130614|3645_1  10 DSK-KRKKEKKKQVEEEESEPPKKEKKKKKRKRDEEDAIDKKEEHKEECVEAKLE 63 
                 233.333334444444445555555555555656666666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1599  (0.116954); expected 273.4 (0.02)
Passed bias filter:                      727  (0.0531744); expected 273.4 (0.02)
Passed Vit filter:                       159  (0.0116296); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.42s 00:00:01.28 Elapsed: 00:00:00.76
# Mc/sec: 911.25
//
Query:       MMETSP0890-20130614|3646_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-72  241.1  23.5      7e-72  241.1  16.3    1.3  2  PF01226.12 Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> PF01226.12  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0      0.37     5e+03      63      80 ..       5      22 ..       3      36 .. 0.52
   2 !  241.1  16.3   5.2e-76     7e-72       2     250 .]      57     303 ..      56     303 .. 0.97

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.37
                GGG---HHHHH-----SS CS
  PF01226.12 63 vFpvGlilvvllgaeLfT 80
                +F++ ++ vv+ ++  +T
  MMETSP0890-20130614|3646_1  5 FFSLCICQVVISETTVLT 22
                455555555554444444 PP

  == domain 2    score: 241.1 bits;  conditional E-value: 5.2e-76
                 --------------HHHHHHHHHHHHHH-------HHHHHHHHT---...TTS----TTT----G.GG---HHHHH-----SSTTTC.HHHHCC----SSHHHHHHHHHHH-------HHHHHHHHHHTGGG-------HHHHHHHTTSS--HHHHHH---HHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH---TTTSS.HHHHHHHTHHHHH-------------HHHHHH CS
  PF01226.12   2 eeiveavvaagekkakksllkllllgilAGafialgallalvvasgl...aaaepglakllgglv.FpvGlilvvllgaeLfTgntlllvlallekkvslkkllrnwvivyigNlvGallvalllaasgvltaegavgealvkiaeakvslsfleaflrgilcNwlVclavwlalaakdiagkilaiwlpifafvasgfeHsvanmfliplgiflganvtlvskfilknlipvtlGNivGGavfvgllywliy 250
                 + ++++++++g +ka +s +kl++l++l+Ga ialga+l++++++ +   ++a+pgla+ l+g++  p+Gl++v+ +g+eL Tgn++l++++++++k+++++l+rnw +vy+gN++G+++va++ a +++       ++ +++ia++k++++f ++f +gilcNwlV++av+++l+ kd a+k++a+++pi+ fva+g+eHs+anmflip++iflga+++ +s+f++knl+pvtlGNi+GG++fvgl+y+ +y
  MMETSP0890-20130614|3646_1  57 AGVYDNAMSTGATKAALSSSKLVTLSFLSGAHIALGAFLMVSCGGSVpgiKEANPGLARALSGVLgLPMGLLMVLGGGGELATGNFALISASYANGKTTFSNLVRNWSLVYLGNFIGSVVVAAFAAIANTGV-----SNGAIAIATGKMAAPFAATFCKGILCNWLVSMAVYMSLSHKDLASKAAAVFFPISGFVALGLEHSIANMFLIPFAIFLGAKIS-LSDFLIKNLLPVTLGNIIGGGLFVGLFYYNVY 303
                 56899********************************************9999********99877**********************************************************99997665.....899*****************************************************************************999.****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.18s 00:00:00.77 Elapsed: 00:00:00.83
# Mc/sec: 892.14
//
Query:       MMETSP0890-20130614|3649_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-40  136.8   1.6    1.2e-27   96.5   0.9    2.2  2  PF00889.14 Elongation factor TS
    1.2e-10   40.8   0.5      2e-10   40.0   0.4    1.4  1  PF00627.26 UBA/TS-N domain


Domain annotation for each model (and alignments):
>> PF00889.14  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   4.5e-15   3.1e-11       1      39 [.     100     140 ..     100     141 .. 0.95
   2 !   96.5   0.9   1.8e-31   1.2e-27     119     220 ..     135     241 ..     135     242 .. 0.96

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 4.5e-15
  PF00889.14   1 aaeGlvavkvdenk..avlvevnsETDFVAknekFqelvkk 39 
                 ++eGl+ ++++++   +v++evn+ETDFV+k  kF+el+++
  MMETSP0890-20130614|3649_1 100 TKEGLIETYIHTGGrlGVMIEVNCETDFVSKGPKFKELCRN 140
                 79*********9999**********************9876 PP

  == domain 2    score: 96.5 bits;  conditional E-value: 1.8e-31
  PF00889.14 119 kelakdvAmhiaAmnp.qylseedvdaevlekekeiaeekakeegkpeeiiekiveGrlekflkevcLleQefvkddkktVeqvlkeasae....ikvvkfvrfevG 220
                 kel++++Am++aA+   +y++ ed++ +++eke+e+ +++ + +gkp++i ekiv+Gr++k+++e +LleQ+++kd+k+tV +++k+  a+    i++++f++fe+G
  MMETSP0890-20130614|3649_1 135 KELCRNLAMQVAASPTvEYVRFEDIPVDAIEKEREMEMKSEDLDGKPDNIKEKIVQGRVNKMFNEKVLLEQDYIKDSKMTVDEFVKSYIATlgenIQIKRFIKFELG 241
                 5899*********76579**********************************************************************999999************9 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.4     3e-14     2e-10       2      37 .]      48      84 ..      47      84 .. 0.97

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 3e-14
                THHHHHHHHH-.---HHHHHHHHHHTTTSHHHHHHHH CS
  PF00627.26  2 deeaiqqLreM.GfsreeakkALratnnnvErAveyL 37
                ++++++ Lre  G++++++kkAL +++++ E+A+e+L
  MMETSP0890-20130614|3649_1 48 SAADVKALREEsGAGMMDCKKALVEADGDKEKAAEWL 84
                799*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 678.06
//
Query:       MMETSP0890-20130614|3651_1  [L=930]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-48  162.6   2.8    9.8e-32  109.6   0.2    3.9  2  PF00475.13 Imidazoleglycerol-phosphate dehydratase


Domain annotation for each model (and alignments):
>> PF00475.13  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1     1e-16   1.4e-12       1     145 []     516     690 ..     516     690 .. 0.76
   2 !  109.6   0.2   7.2e-36   9.8e-32       1     124 [.     742     866 ..     742     872 .. 0.92

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 1e-16
                 -----HHHHHHHHHH----EEEEEEE--.--------T.........HHHHH......H---HHHHH------------EEEEETTEEE................EEEEE-SS--EEEEE----SSB----BCHHHHHHHHHHHHH---E.EEEEEEE---HHHHHHHHHHHHHHHHH CS
  PF00475.13   1 tgigfldhmLeqlakhagidlkvkakgd.leiddHhtv.........edvgi......aLGqalkqalgdkkgieRfgsavvpmdeala................evalDlsgrpylvfeaefkrekvgeldtelveeffrsladnakit.lhvkvlrgendhhivealfKalaraLr 145
                 tgi fldhm++ql++h+ ++++  ++ d ++   H  +          d +i       LG al++a+   + +e  +++  p+deal+                    D    py  +  +  r  +g+++t+l+++f++++++  +++ l ++  rg+n+hhivea+fKa+ara+r
  MMETSP0890-20130614|3651_1 516 TGICFLDHMIDQLQSHGLFEVHCVVSIDgVKCVPHTDYaggsiqrrpRDSAIfsaageSLGIALSHAVSVSSDVE--ATFSAPLDEALVqvrllggsigsqqdpdDEDFDCDLAPYGDVP-RGGRLWIGRYRTSLTPHFWKGIMRGWGLSrLVLSKRRGRNAHHIVEATFKAFARAVR 690
                 9********************998888844444454331222222226777766544457777777777777776..679*********8888888888888888444444446777665.444557******************99986489999********************86 PP

  == domain 2    score: 109.6 bits;  conditional E-value: 7.2e-36
                 -----HHHHHHHHHH.----EEEEEEE----------THHHHHH---HHHHH------------EEEEETTEEEEEEEE-SS--EEEEE----SSB---....-BCHHHHHHHHHHHHH---EEEEEEE CS
  PF00475.13   1 tgigfldhmLeqlak.hagidlkvkakgdleiddHhtvedvgiaLGqalkqalgdkkgieRfgsavvpmdealaevalDlsgrpylvfeaefkrekvge....ldtelveeffrsladnakitlhvkvl 124
                 tgi  +d +L+++ +  a++dl++++kgd+ iddHhtvedv+i+LGq+l+qalgd++g++R+++a+v      ++v++Dlsgrp+l + +ef++e +++    ++te++e++f sla++ak+tlhv++ 
  MMETSP0890-20130614|3651_1 742 TGIAPYDNLLRHFVQgWASLDLSINCKGDTYIDDHHTVEDVAIVLGQTLDQALGDRRGCARMANATVR----NVQVVVDLSGRPHLDWCLEFRDEWLDSdnmtMSTEMLEHIFLSLATHAKLTLHVHTI 866
                 89999*****99976489************************************************96....799**************999998765445669**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:01.09
# Mc/sec: 2044.60
//
Query:       MMETSP0890-20130614|3654_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:01.00
# Mc/sec: 1023.24
//
Query:       MMETSP0890-20130614|3657_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   40.3   0.0    2.1e-10   40.1   0.0    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.6e-14   2.1e-10     173     302 ..       3     134 ..       1     139 [. 0.78

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.6e-14
                 ------HHHHHHCCCCCTH.TT---EEEEEGGG-TT-.........................S..----T.TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EE CS
  PF00291.20 173 vGgGgliaGiakglkelil.pkirvigvepegsdalarslragervq...ldkk.......ttiaglscgtpldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvv 302
                  G+Gg++ G +k++k+    pk+++i +epe ++ l+ + ++ +  +   +  +       + i+g  +++ ++ +l  +  + l+d+   v+  + ++ ++ la+ egi+++ sg+a + ++l  +k      ++++ ++
  MMETSP0890-20130614|3657_1   3 YGTGGTFHGAGKAIKK--AlPKVKIILAEPEAAPLLKSGVKTDRNPDgspV--DshpafasHPIQGWTPDF-IPKVLEDAEPQNLMDQLFMVPGSQGIKVAKDLAAFEGILTGISGGATMYSALEIAKTA----PENSIIL 134
                 59**************..449*******************99998766552..134556667899998888.455555555556666666*********************************9754433....3444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 564.21
//
Query:       MMETSP0890-20130614|3656_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1228.13
//
Query:       MMETSP0890-20130614|3658_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   14.4   0.8      0.022   14.4   0.6    2.4  2  PF06165.6  Glycosyltransferase family 36


Domain annotation for each model (and alignments):
>> PF06165.6  Glycosyltransferase family 36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.32   4.4e+03      38      76 ..      20      59 ..       9      79 .. 0.69
   2 ?   14.4   0.6   1.6e-06     0.022      16     106 ..     240     329 ..     235     335 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.32
   PF06165.6 38 egyseferkdggieteltvfVsped.dvelrrltlkNrss 76
                ++  + e+k++ ++++ +++V +e+ d e +++ +  rs+
  MMETSP0890-20130614|3658_1 20 AENIRLEAKEELLSVKNELTVLKEKiDNERHEVAIAERSK 59
                5566677777777777777777777677777777777765 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.6e-06
   PF06165.6  16 evwSataqpvrkeedeyevrhgegyseferkdggieteltvfVspeddvelrrltlkNrssrerelsvtsyaevvlgnaradsahpafsel 106
                 ++   t qp  +   e +++h e+++e  r+++  +++    V+ e +v++r+l l  +  r+r+++    ++   ++ r + a+ + s+l
  MMETSP0890-20130614|3658_1 240 AWAENTLQPYIRVL-EAKIHHAEKHAELCRTEEREAQNAAARVQAECQVKIRKLDLDEANLRSRQIEFAEQVKKAQAALRRQRAKTQNSQL 329
                 44457899999999.99***************************************************99888777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1700  (0.124342); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.95
# Mc/sec: 1266.29
//
Query:       MMETSP0890-20130614|3661_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   17.0   0.0     0.0046   16.7   0.0    1.2  1  PF03754.8 Domain of unknown function (DUF313)


Domain annotation for each model (and alignments):
>> PF03754.8  Domain of unknown function (DUF313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.4e-07    0.0046      29      83 ..      57     110 ..      32     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.4e-07
   PF03754.8  29 fktdvkkkqsrlsiplnklirndFLteeEkraikeeekkkdkkkGvkvilvdqel 83 
                  + d+ +  sr ++ ++k+  ++FL+e  k+ + ++++ +++  Gv ++l    l
  MMETSP0890-20130614|3661_1  57 NSFDIATLSSRQKVANQKVPAREFLSESWKEEL-DDDDSNQEGGGVTAALASAVL 110
                 45699****************************.9999999999**999976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 514.89
//
Query:       MMETSP0890-20130614|3655_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   12.7   0.1        1.3    9.0   0.0    2.4  2  PF13908.1 Wnt and FGF inhibitory regulator
       0.43    9.9   3.4       0.51    9.7   0.0    2.5  3  PF05568.6 African swine fever virus J13L protein


Domain annotation for each model (and alignments):
>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.067   4.6e+02      48      97 ..     175     222 ..     158     273 .. 0.62
   2 ?    9.0   0.0    0.0002       1.3      75     155 ..     682     758 ..     669     779 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.067
   PF13908.1  48 dqstCknedesvstdgkfrkpvedptkdlkvvlivsiilivvfivvlivi 97 
                   ++C++ ++  +     + p  d +k l   l + i  ++++ + +iv 
  MMETSP0890-20130614|3655_1 175 GRNMCQWSERTGECR--HNGPPSDYFKTLEHMLTIIIATMILVPMLVIVQ 222
                 345788877655554..333444444333333333222222222444443 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0002
   PF13908.1  75 dlkvvlivsiilivvfivvliviftcskcvlekavrrqrpvvtsassttvqatplpqeeskapsypqpqsqgyetpppqga 155
                 + + +++ s++++v f  v+i i     + + +  +++r+++++ +s+   ++p ++++       + +++ y++p+p + 
  MMETSP0890-20130614|3655_1 682 G-MCTIALSVFVLVTFTYVVIAIHRRILLARDASIKKHREQTQTFTSASLDQRPSDAPPVD---STANSTADYDPPLPPSL 758
                 5.77899999999999988888887777888888999999999999999999999998655...23345555555544332 PP

>> PF05568.6  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   7.4e-05      0.51      13      52 ..     184     225 ..     179     228 .. 0.85
   2 ?   -0.9   0.1      0.13     9e+02      20      54 ..     469     506 ..     452     528 .. 0.70
   3 ?   -2.0   0.0      0.29     2e+03      31      56 ..     683     708 ..     678     748 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 7.4e-05
   PF05568.6  13 hygeclssvsapsffst..hmytiliaivvliiiiivliylf 52 
                   gec  + +   +f t  hm ti+ia ++l+ +++++ + f
  MMETSP0890-20130614|3655_1 184 RTGECRHNGPPSDYFKTleHMLTIIIATMILVPMLVIVQFAF 225
                 579***9999999**9888**********9998877776655 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.13
   PF05568.6  20 svsapsffsthmytiliaivvliiii...ivliylfss 54 
                 +vs+ s  + + y i++ai  ++++    i  + lf s
  MMETSP0890-20130614|3655_1 469 AVSTQSKVAPKTYKIILAIFFILLMTgasIAWLILFGS 506
                 688999999999****9998776653222555556655 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.29
   PF05568.6  31 mytiliaivvliiiiivliylfssrk 56 
                 m ti +++ vl+    v+i +     
  MMETSP0890-20130614|3655_1 683 MCTIALSVFVLVTFTYVVIAIHRRIL 708
                 78888888888888888777654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:01.47
# Mc/sec: 1279.69
//
Query:       MMETSP0890-20130614|3659_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   47.8   2.7    1.5e-11   44.8   1.9    1.9  1  PF12708.2  Pectate lyase superfamily protein
    4.7e-10   38.8   0.0    6.6e-10   38.3   0.0    1.2  1  PF00295.12 Glycosyl hydrolases family 28
    0.00014   21.0   0.5     0.0013   18.0   0.1    2.4  2  PF12218.3  N terminal extension of bacteriophage endosialidase


Domain annotation for each model (and alignments):
>> PF12708.2  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   1.9   3.3e-15   1.5e-11       4     152 ..      49     196 ..      45     208 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.3e-15
   PF12708.2   4 VkdfGAkgDGvtDdtaAiqkAi..caaattggatVyfPaG.tYlisspiiipsnttlvGdggnvpvlklsdaassfvstegngvidagdpyseggitnnfyrqirnividgtgialdntasgihwqv................aqntsidnvkainigkdgiefntgt 152
                 V d+GA+gDG+tDdt A+q+A+  caa+++gg+++ + +G ++l    ++  s++ l  +g+ +   + +++ s+ ++ e           ++       ++ ++++ i g gi  +   +g +w++                a+n+ + +++++n  ++++e   ++
  MMETSP0890-20130614|3659_1  49 VVDYGAVGDGKTDDTDALQAALddCAASRNGGGIIKLLKGyEFLSLPLTLSGSGCALKIEGKLTQKFW-QPSMSQGDIPEA---------FIT------VSDGVSDFLIYGGGIING---NGPTWWNssgdtyanrpklldakATNVALYDIQFYNSANHNLEMY-CD 196
                 99**************************************5566556577788888888888777776.444444442222.........221......2345**********9994...577777778888877999999999999999999999988888864.22 PP

>> PF00295.12  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.4e-13   6.6e-10      18     134 ..      93     206 ..      79     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.4e-13
                 EE-TT--....---EEEEE--BB--.....------E.EEEE----.-EEEE---.--B------S------..-------EEEEEEEEEEEEEE--EEE--SS--EEEE.EEEEEEEEEEEE CS
  PF00295.12  18 lgltslsgpcksdatvtlegtttak.....skeskgkdliwitaek.itvlgasGggtiDGqgkaWwdesckkkksckkkpkflrfsklknstiknlsiknspnfhvsvedcknltasditid 134
                 + +++ls    s+  +++eg++t k       + +++ +++it+++ ++ + ++Ggg+i+G+g++Ww++s++      + pk+l ++ ++   +++++  ns n+ +++  c+n ++  ++i+
  MMETSP0890-20130614|3659_1  93 SLPLTLS---GSGCALKIEGKLTQKfwqpsMSQGDIP-EAFITVSDgVSDFLIYGGGIINGNGPTWWNSSGD---TYANRPKLLDAKATN-VALYDIQFYNSANHNLEMY-CDNTEIAFVNIT 206
                 5556666...478899999999999766444444444.89999875599**********************8...78899****987765.******************9.998887766654 PP

>> PF12218.3  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.9e-07    0.0013       1      24 [.      54      77 ..      54      95 .. 0.83
   2 ?    0.7   0.0      0.07   3.2e+02      22      35 ..     143     156 ..     132     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
                -------B-HHHHHHHHHHS---- CS
   PF12218.3  1 avGDGvtdDtaalsavlaaspngk 24
                avGDG+tdDt+al+a+l+++++ +
  MMETSP0890-20130614|3659_1 54 AVGDGKTDDTDALQAALDDCAASR 77
                89***************9966544 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.07
                 ----B-----EEEE CS
   PF12218.3  22 ngkkidGrGltykv 35 
                 +g +i+G+G t+  
  MMETSP0890-20130614|3659_1 143 GGGIINGNGPTWWN 156
                 5789*****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.88
# Mc/sec: 569.13
//
Query:       MMETSP0890-20130614|3664_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       843  (0.0616589); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.96
# Mc/sec: 574.13
//
Query:       MMETSP0890-20130614|3663_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1458  (0.106641); expected 273.4 (0.02)
Passed bias filter:                      555  (0.0405939); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 402.35
//
Query:       MMETSP0890-20130614|3662_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.90
# Mc/sec: 1123.63
//
Query:       MMETSP0890-20130614|3666_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.94
# Mc/sec: 430.83
//
Query:       MMETSP0890-20130614|3671_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:01.06
# Mc/sec: 913.33
//
Query:       MMETSP0890-20130614|3667_1  [L=1748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-24   83.7  21.8    4.2e-08   32.6   0.1    8.3  8  PF00400.27 WD domain, G-beta repeat
    5.7e-09   35.6   0.0    1.1e-08   34.6   0.0    1.5  1  PF00439.20 Bromodomain
    0.00048   19.6   9.0    0.00048   19.6   6.3    4.8  5  PF05764.8  YL1 nuclear protein


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.2e-08   5.3e-05      12      39 .]     218     245 ..     207     245 .. 0.90
   2 !   32.6   0.1   9.3e-12   4.2e-08       5      38 ..     253     286 ..     249     287 .. 0.95
   3 ?    0.7   0.0       0.1   4.8e+02       6      39 .]     345     378 ..     341     378 .. 0.85
   4 !    7.4   0.0   0.00084       3.8      27      39 .]     420     432 ..     397     432 .. 0.83
   5 !   10.2   0.1   0.00011      0.51       5      38 ..     499     533 ..     496     534 .. 0.93
   6 !    4.6   0.0    0.0063        29       4      27 ..     586     609 ..     583     614 .. 0.79
   7 !   14.1   0.1   6.4e-06     0.029       2      39 .]     642     680 ..     641     680 .. 0.94
   8 ?   -1.0   0.1      0.36   1.7e+03      12      27 ..     759     774 ..     756     777 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.2e-08
                 SSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgSrDgtirlWd 39 
                  +V+cvaf+ +g ++++g +D+ +++W+
  MMETSP0890-20130614|3667_1 218 YSVYCVAFDRTGEFVITGADDHLVKVWH 245
                 68*************************6 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 9.3e-12
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 +tlrgH s + ++a+s d ++lasgS+Dgt+rlW
  MMETSP0890-20130614|3667_1 253 STLRGHRSVIADLAISYDNSCLASGSEDGTVRLW 286
                 79******************************** PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.1
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +l++   +V+ v+f++ g+l a + +   +r Wd
  MMETSP0890-20130614|3667_1 345 ILSASFCAVSVVKFDQYGNLYAAATDCADVRCWD 378
                 56666678999**************9999**998 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.00084
                 EEEETTSEEEEEE CS
  PF00400.27  27 asgSrDgtirlWd 39 
                 a+g +Dgt+rlW+
  MMETSP0890-20130614|3667_1 420 ATGTKDGTLRLWK 432
                 9***********6 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 0.00011
                 EEEESSSSSEEEEEEESSSTEEEEEE.TTSEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgS.rDgtirlW 38 
                 +++++H +  t+++fs  + +l+s+S   +t ++W
  MMETSP0890-20130614|3667_1 499 TIFDAHAADLTDLDFSYASDRLLSASmQHCTAKIW 533
                 799***********************977999999 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.0063
                 EEEEESSSSSEEEEEEESSSTEEE CS
  PF00400.27   4 katlrgHtspVtcvafspdgplla 27 
                 +++l+g +   t+va+s+d +l++
  MMETSP0890-20130614|3667_1 586 LSSLSGSKRELTSVAWSQDDSLVF 609
                 6789999999*********55544 PP

  == domain 7    score: 14.1 bits;  conditional E-value: 6.4e-06
                 EEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 + +++l +Ht  + ++a +p  ++ ++sg++Dg +r W+
  MMETSP0890-20130614|3667_1 642 TKLRSLLAHTWDCFALAPHPRhRNSFVSGGHDGALRFWE 680
                 67899*********************************6 PP

  == domain 8    score: -1.0 bits;  conditional E-value: 0.36
                 SSEEEEEEESSSTEEE CS
  PF00400.27  12 spVtcvafspdgplla 27 
                 + +++  +s dg++la
  MMETSP0890-20130614|3667_1 759 GEIWSATWSVDGSRLA 774
                 579*********9998 PP

>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.5e-12   1.1e-08       2      83 ..    1588    1672 ..    1587    1673 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.5e-12
  PF00439.20    2 eqilndlqehklastFsapv...dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyedar 83  
                  +q++n  ++ + ++ F+ pv    ++e  +Y + ++ Pi L+ ++++lasg+y++l++fe d++ +  N+ ky +  s+  + a+
  MMETSP0890-20130614|3667_1 1588 SQVINRAINIEQYEGFITPVieqFPDETTKYLETVPVPIELQLMRDRLASGYYRQLEAFEDDARHLALNCSKYTGASSPWTKNAN 1672
                  6777777778888999999998889999**************************************************9999886 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.3   4.7         3   1.4e+04     180     201 ..       7      28 ..       2      36 .. 0.51
   2 !   19.6   6.3     1e-07   0.00048      47     127 ..     970    1048 ..     921    1073 .. 0.76
   3 ?   -5.4  14.3         3   1.4e+04      71     179 ..    1099    1209 ..    1084    1223 .. 0.58
   4 ?   -2.2  10.5       0.5   2.3e+03      43      95 ..    1232    1279 ..    1227    1315 .. 0.64
   5 ?   -4.7   1.2       2.8   1.3e+04      73      96 ..    1689    1712 ..    1683    1738 .. 0.46

  Alignments for each domain:
  == domain 1    score: -7.3 bits;  conditional E-value: 3
   PF05764.8 180 rkekkkekelTQeErLaeAket 201
                 ++e+++e+ + QeE L++ +e 
  MMETSP0890-20130614|3667_1   7 EEEHEEERIYAQEEVLEQEEEE 28 
                 3344444444444444443333 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1e-07
   PF05764.8   47 eefeeeeeeeeeeeDsdfddseddeeesddeeegekelekeekekkkkrkkkkaykeplkkkkkkkkkaakkkkaaaeekk 127 
                  +ef  ++++++++ D d+ d++d++ ++dd+ee + e+ ++ +++++  +++  ++   + ++ ++++ +  ++++aee++
  MMETSP0890-20130614|3667_1  970 AEFDLDADDDDDF-DADMHDDDDEDDDDDDDEEVDDEIAQQVQARRRTLRQNSRSNSRSRRRRNQNNDDT-IDESEAEEDN 1048
                  69***********.*******9999999999999998888888888886666666666544443333333.3333333333 PP

  == domain 3    score: -5.4 bits;  conditional E-value: 3
   PF05764.8   71 eeesddeeegekele..keekekkkkrkkkkaykeplkkkkkkkkkaakkkkaaaeekkkkkerkseaetlldkkrRkSsRsstve..nkealeeklkerekkrkkiqekiak 179 
                    e+dde+e+e  le    ++ ++++ + +  ++   + ++ + ++  ++++ ++ + ++++e   ++++   ++++ SsR+st++  +   + + ++e+ ++r+++ +++++
  MMETSP0890-20130614|3667_1 1099 YDEEDDENEEESSLEipPPRRSSRRR-AENSSSN-RRSTRRAIVEDDDEDDDLDNYSSEEQQEGRRQRRSRRLNNTNISSRRSTRRipEEDDVDDEISEQGDQRQRRSSRLNN 1209
                  56777788888878875555555555.3333333.333444444443333333333333444444445555556678888888876224556888888888888887777644 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.5
   PF05764.8   43 eedDeefeeeeeeeeeeeDsdfddseddeeesddeeegekelekeekekkkkr 95  
                  +edDee ++eeee+ee     +d ++d+++e+d+ ++ge ++e++    ++k 
  MMETSP0890-20130614|3667_1 1232 DEDDEEINMEEEEDEE-----LDIESDSPAEKDESDAGESDEEEQMVVVNRKP 1279
                  7889998887766666.....56665555555555666665555554444443 PP

  == domain 5    score: -4.7 bits;  conditional E-value: 2.8
   PF05764.8   73 esddeeegekelekeekekkkkrk 96  
                  ++dd+ee e   +++ +++++  +
  MMETSP0890-20130614|3667_1 1689 QEDDQEEHEAPPRNAGRKRQRSPA 1712
                  444444444433333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1748 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       810  (0.0592452); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.94u 0.42s 00:00:03.36 Elapsed: 00:00:02.71
# Mc/sec: 1545.69
//
Query:       MMETSP0890-20130614|3674_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-56  190.1   0.0    9.7e-43  146.1   0.0    2.2  2  PF01142.13 tRNA pseudouridine synthase D (TruD)
  ------ inclusion threshold ------
      0.027   13.4   0.1      0.046   12.7   0.1    1.3  1  PF12227.3  Protein of unknown function (DUF3603)


Domain annotation for each model (and alignments):
>> PF01142.13  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.0   1.4e-46   9.7e-43      13     252 ..      60     289 ..      49     295 .. 0.80
   2 !   42.4   0.0   4.5e-15   3.1e-11     290     378 .]     295     379 ..     288     379 .. 0.88

  Alignments for each domain:
  == domain 1    score: 146.1 bits;  conditional E-value: 1.4e-46
  PF01142.13  13 tgkpgiggklkqepeDFiVeEilg....fepsg.eGehlilkieKrgwntlevarelakalgisekeigyAGlKDrhAvTrQwiSvqlpkkee......lpdl.....egvellevgrhrkkLrlGdlkGNrFkirlrdve.deeaeerleerleeikekGvPNYFGeQRFGrdrgnnhlvgkallkgdleeaiakeekkkkrkklietkdekaeelekekdykkalealpkklrslflsAyqSylFNrvlserlek 252
                 ++  g+gg lkq+++DFiV+Ei++      p+  +  h++lk+++++ +tl+v+ +l + lg+    igyAGlKD++A+ +Q++S+   ++        ++d+     +g+e++++ ++r kL+   ++GN F+i+l d++ + e+   + ++ + i+++G+PNY+G+QRF+++     ++g +++++ ++ a       ++r ++            + k+ k a++a  ++ +++  +A+ S+lFN +l++rl++
  MMETSP0890-20130614|3674_1  60 CEFRGVGGVLKQRCSDFIVTEIMDeipkLCPDAdRNYHYWLKVKRTNKTTLQVVADLRQILGV--DTIGYAGLKDKRAIATQTFSILSFSQTFereldyKKDFeplskKGIEIIDISKSRYKLKQCMHQGNYFEIILADCScNMED---IHSIAALIRAHGFPNYYGPQRFSKR-CGLAVRGARIISE-ISAA-------RRRAHFG-----------TVKKLKSAARA--HPIKRFACEAFASMLFNLWLAHRLQS 289
                 566799*************9887522225566735556*************************..99*******************86666543445554444766544*******************************955555...99999********************.999*********9.3322.......2222111...........22223333333..4899********************94 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 4.5e-15
  PF01142.13 290 eisptlplpGrkkllaegeaeelekeileeegltlelfkkleklklkgerRalllkpenlsieleeeekltlsFsLpkGsYATsvlrel 378
                 +i+ t+p++G ++ l+++    + ++ile++ ltl+ +++l+++ ++g +R + ++p+nl ie + + +l ++F+Lp+G+YAT++lre+
  MMETSP0890-20130614|3674_1 295 RINQTGPVFGANMDLSDN---GTSQRILEDKILTLAGIDNLNDFPINGFKRDAMVIPKNLFIEKNPR-GLLFKFFLPQGAYATMLLREF 379
                 6899*******7777644...35789999999999999***********************776776.*******************96 PP

>> PF12227.3  Protein of unknown function (DUF3603)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.7e-06     0.046      41     132 ..     100     184 ..      69     189 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.7e-06
   PF12227.3  41 knheriqleycfvvtdGkgilavdtigykipirksrliprqeqlvyelveeeeaekyelekeelekeyhilslspellkGltrkerqlkqll 132
                  + +r++     vv+d ++il vdtigy   ++  r i  q    + +++ +++ + el+    +k++  ls +  ++  +++   +lkq +
  MMETSP0890-20130614|3674_1 100 LKVKRTNKTTLQVVADLRQILGVDTIGYA-GLKDKRAIATQT---FSILSFSQTFERELD---YKKDFEPLSKKGIEIIDISKSRYKLKQCM 184
                 456788888999****************7.689999999986...555555544444444...46899999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.59
# Mc/sec: 2022.69
//
Query:       MMETSP0890-20130614|3684_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   25.2   0.0    2.8e-05   24.1   0.0    1.6  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    0.00082   19.0   0.0     0.0024   17.6   0.0    1.8  1  PF13410.1  Glutathione S-transferase, C-terminal domain
     0.0011   18.8   0.0     0.0021   17.8   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain
     0.0063   16.3   0.0      0.014   15.2   0.0    1.5  1  PF00043.20 Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.051   13.6   0.0    1.5  1  PF02798.15 Glutathione S-transferase, N-terminal domain
      0.031   14.1   0.0      0.061   13.2   0.0    1.4  1  PF00484.14 Carbonic anhydrase
      0.039   13.8   0.0      0.084   12.7   0.0    1.5  1  PF00462.19 Glutaredoxin


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   2.8e-05       6      53 ..      66     121 ..      63     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.4e-08
                 TSHHHHHHHHHHHH----EEE----.......TTTTHHHHHHH-TT--SSEEE.-- CS
   PF13417.1   6 fSpyarkvrlaLeekglpyelvevt.......pgkkrpellalnpkgkvPvLe.dd 53 
                 ++p+++ + ++Lee +++ye+  ++        ++k+p++++  p g vP L+  d
  MMETSP0890-20130614|3684_1  66 WCPFSQSAQMLLEEMKVSYEIKTIPlraymraGEEKDPAYIKDVPDGVVPGLQhFD 121
                 9********************999877777766688**************998345 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0024       7      50 ..     178     223 ..     155     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.2e-06
                 -GGGTT-THGGG------SS...-------HHHHHHHHHHHHHHHH CS
   PF13410.1   7 araqlraaLdaleahLadgp..fllGdrpslaDialapflvrldaa 50 
                 + +++ + L+ +++++  ++  f +G ++++aD  l+p l r  a+
  MMETSP0890-20130614|3684_1 178 QPKTAAKILRRIDELIQRSGgpFVCGKELTAADLQLIPLLERYEAY 223
                 6677889999999988877788********************9887 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0021       1      51 [.      66     119 ..      66     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
                 --HHHHHHHHHHHH----EEEEEE...H....TTSHHHHHHHH------SEEE. CS
   PF13409.1   1 acPwahRvlialalkgledeisvv...plepkgfekseellalsprgtVPvLwd 51 
                 +cP+++ + ++l+++++ +ei+ +     ++ g+ek++++ +  p g VP L++
  MMETSP0890-20130614|3684_1  66 WCPFSQSAQMLLEEMKVSYEIKTIplrAYMRAGEEKDPAYIKDVPDGVVPGLQH 119
                 8**********************944444778889999999999******9875 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.2e-06     0.014      33      74 ..     182     225 ..     170     235 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHHHHHH..TSSSSSSSS-BHHHHHHHHHHHHHHHHTT CS
  PF00043.20  33 vlevlealeeels..gkkylvGdkltlADialfpalewlqrldg 74 
                  +++l +++e  +  g  +++G +lt AD+ l+p+le ++++ +
  MMETSP0890-20130614|3684_1 182 AAKILRRIDELIQrsGGPFVCGKELTAADLQLIPLLERYEAYIL 225
                 578999999999999**********************8877655 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-05     0.051      11      61 ..      69     122 ..      56     127 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHTT--EEE....EEEGTTCCHCHHHHHHHHCTTTS-SSEEEETTT CS
  PF02798.15  11 raeslrillaekgveyei....vrvdfeagegkspewlklnpkigrvPaledgdg 61 
                 +++s+ +ll+e +v+yei     r  + age+k+p + k  p+ g vP l++ d+
  MMETSP0890-20130614|3684_1  69 FSQSAQMLLEEMKVSYEIktipLRAYMRAGEEKDPAYIKDVPD-GVVPGLQHFDK 122
                 67899*************44442345689**************.*******9744 PP

>> PF00484.14  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.061       4      52 ..     294     343 ..     293     348 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.1e-05
  PF00484.14   4 igCsDsRvppelif.glgpGdlfvvRnagnlvppyddsvlasleyAvevl 52 
                 ++CsD+R+ ++++  + gp   f +R a  ++ +++++v++++ +A+ + 
  MMETSP0890-20130614|3684_1 294 FTCSDARIAAAKLArNHGPVAKFALRLATKQCEQQQEDVVKAIDFALLQI 343
                 79*******777777*******************************9776 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.3e-05     0.084       8      30 ..      66      88 ..      59     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.3e-05
                TSHHHHHHHHHHHHTTHHEEEEE CS
  PF00462.19  8 tCpyCkkakrlLdelgvkyeeid 30
                +Cp+++ a  lL+e++v+ye+  
  MMETSP0890-20130614|3684_1 66 WCPFSQSAQMLLEEMKVSYEIKT 88
                8******************8755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.79
# Mc/sec: 1328.61
//
Query:       MMETSP0890-20130614|3689_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.017   14.5   0.1    1.2  1  PF13828.1  Domain of unknown function (DUF4190)
       0.95    9.0   3.2        1.3    8.6   2.2    1.2  1  PF01484.12 Nematode cuticle collagen N-terminal domain


Domain annotation for each model (and alignments):
>> PF13828.1  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.5e-06     0.017       3      42 ..       3      44 ..       1      46 [. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.5e-06
   PF13828.1  3 iaSLvlgilglvl..lglllsivaiilGhvAlrqIrrtgekG 42
                ia Lv ++++l++   ++  +i ai++G+    ++r++g kG
  MMETSP0890-20130614|3689_1  3 IALLVIALATLLFvsTMMYNQIYAIVTGIGTIDRMRKRGPKG 44
                89999999999998888899*******************998 PP

>> PF01484.12  Nematode cuticle collagen N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.2    0.0002       1.3       7      29 ..       3      25 ..       1      30 [. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0002
  PF01484.12  7 vafStvavlsslvtlpsiyndin 29
                +a+ ++a+ ++l++ +++yn+i 
  MMETSP0890-20130614|3689_1  3 IALLVIALATLLFVSTMMYNQIY 25
                678899***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 336.11
//
Query:       MMETSP0890-20130614|3683_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-26   90.5   0.1      3e-25   88.7   0.1    2.0  1  PF01743.15 Poly A polymerase head domain
  ------ inclusion threshold ------
       0.13   12.6   0.0         20    5.6   0.0    2.6  2  PF12190.3  Fungal protease inhibitor


Domain annotation for each model (and alignments):
>> PF01743.15  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.1   4.4e-29     3e-25       2     126 .]      41     183 ..      40     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 4.4e-29
                 EE----HHHHH-----SEEEEEE-.....--HHHHHHHHHHH-----EE-TT---EEEE----EEEEEE--S---------------..............-HHHHHHTSSBGGGS-EEEGG---EE----.--HHHHTTEE- CS
  PF01743.15   2 ylvGGaVRDllLgkevkDvDlavd.....aapeevakefakkvkeallsgkefqtiavllkkqtlevatfrtekkesdarnpksekfte............sleeDlkrRDfTiNalaynlekgkviDltg.GlkDLksrllr 126
                 ++ GG+VRD+ Lg+  kD+D+avd     a +e+ +  ++ + +++ +s k + ++a   +++ le+at+r+     d++n +se++++            +  eD+ rRDfT+Nal+ n+++++++D+t+ G +DL+ ++lr
  MMETSP0890-20130614|3683_1  41 RICGGWVRDKALGRVTKDIDVAVDncsgaAFAERAKAVLEAREDGKSSSSKIAVIAANPDQSKHLETATMRLYGLDVDFVNLRSEAYADaqsrvptsvhfgTPLEDALRRDFTVNALFFNVHTKRIEDYTQkGWADLRAGVLR 183
                 799*********************8888545555555555555553333444444444444555***********************99*****************************************99********997 PP

>> PF12190.3  Fungal protease inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0084        58      34      85 ..     268     321 ..     259     325 .. 0.83
   2 ?    5.6   0.0    0.0029        20      55      84 ..     353     382 ..     330     389 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0084
   PF12190.3  34 nsvyrakhagkcaccpacvtllgenaa..ckiyskelgetpsavckeplkclkk 85 
                 ++ +ra ha  c       t   e+      +  k + +t s++ ++  +cl+ 
  MMETSP0890-20130614|3683_1 268 SATFRAVHAQSCIWNNDIDTTTKESLQtlFDTNDKVISDTTSSIWRHASRCLNA 321
                 56899*******999999888888654116789999***************986 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0029
   PF12190.3  55 lgenaackiyskelgetpsavckeplkclk 84 
                 l +++a  + +k+    p+a+c++ lk  +
  MMETSP0890-20130614|3683_1 353 LAQATAIATNAKKNAPLPAAICRDGLKLPN 382
                 5667778899999999**********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:00.84
# Mc/sec: 1617.54
//
Query:       MMETSP0890-20130614|3693_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-27   93.1   0.2    1.1e-26   92.2   0.1    1.5  1  PF00226.26 DnaJ domain
    1.3e-17   63.8   4.3    1.3e-17   63.8   3.0    2.2  2  PF09320.6  Domain of unknown function (DUF1977)
  ------ inclusion threshold ------
      0.025   14.3   3.3       0.14   12.0   1.8    2.6  2  PF07719.12 Tetratricopeptide repeat
       0.12   11.8   5.0        0.5    9.9   3.2    2.3  2  PF00515.23 Tetratricopeptide repeat
       0.58    9.9   4.3       0.23   11.1   0.7    2.2  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.1     4e-30   1.1e-26       2      64 .]     113     173 ..     112     173 .. 0.99

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 4e-30
                 HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                 +Y++Lgv+++as+eeIkkaYrklal++HPDknk+++  a+e+fk i+ A+ +Lsdp+kr++yd
  MMETSP0890-20130614|3693_1 113 HYAVLGVDRGASEEEIKKAYRKLALRCHPDKNKSPH--ADEAFKAIASAFAILSDPTKRRNYD 173
                 8***********************************..************************9 PP

>> PF09320.6  Domain of unknown function (DUF1977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.88   2.4e+03      58      88 ..       3      31 ..       1      83 [. 0.70
   2 !   63.8   3.0   4.6e-21   1.3e-17       5     107 .]     263     377 ..     256     377 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.88
   PF09320.6 58 dYisnlrnnCekekqqkeqllerarlfgded 88
                ++++ l+ + +++++ +   lera+ + +e 
  MMETSP0890-20130614|3693_1  3 KFVTVLKMEANRDEALR--CLERAKAYYNEG 31
                56677777777777777..667776333333 PP

  == domain 2    score: 63.8 bits;  conditional E-value: 4.6e-21
   PF09320.6   5 lfss..sPsYslkpsskytikrettkl....kvpYyvkkkfeeey..sssklkeleksveedYisnlrnnCekekqqkeqllerarlfgded....llkkaekmetpsCekLkdl 107
                 l ++  +P++sl++  ky+++r t++     +++Yyv+++f+ +y  +  +++++++ ve+++++ l+ +C+ +++q+++l ++ar+ ++++     +++ +++++++C++L+dl
  MMETSP0890-20130614|3693_1 263 LPTQnsEPPFSLDNRGKYQHERVTKSSnvvkNIKYYVTDNFHAKYgrDPYSIARIDRAVENEFKTSLQYSCYAQQEQQQNLKHQARYGRSRQqrdqAMERYHNFRLDACDQLEDL 377
                 4444569*****************9862222579***********99999************************************55444433458999999*********986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.026        72      16      27 ..      13      24 ..       8      26 .. 0.88
   2 ?   12.0   1.8   5.2e-05      0.14       4      30 ..      20      46 ..      17      49 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.026
                -HHHHHHHHHHH CS
  PF07719.12 16 dyeeAleafekA 27
                + +eAl+++e+A
  MMETSP0890-20130614|3693_1 13 NRDEALRCLERA 24
                679********9 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5.2e-05
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                + ++++ayy+ g+y+ +++++ek+ +l
  MMETSP0890-20130614|3693_1 20 CLERAKAYYNEGKYALCIKYCEKSNRL 46
                6789******************98666 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.072     2e+02      18      27 ..      15      24 ..      13      26 .. 0.90
   2 ?    9.9   3.2   0.00018       0.5       6      26 ..      22      42 ..      17      43 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.072
                HHHHHHHHHH CS
  PF00515.23 18 deAleyyekA 27
                deAl + e+A
  MMETSP0890-20130614|3693_1 15 DEALRCLERA 24
                9********9 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00018
                HHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23  6 nlGnaylklgkydeAleyyek 26
                 ++ ay++ gky  +++y+ek
  MMETSP0890-20130614|3693_1 22 ERAKAYYNEGKYALCIKYCEK 42
                699*****************9 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   8.6e-05      0.23       4      32 ..      20      48 ..      13      51 .. 0.92
   2 ?   -3.2   0.1       3.3   9.1e+03       7      17 ..     330     340 ..     329     342 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.6e-05
                TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                +++++++Y + G+y + ++y ek + l++
  MMETSP0890-20130614|3693_1 20 CLERAKAYYNEGKYALCIKYCEKSNRLAN 48
                56899********************9997 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.3
                 ---HHHHTT-H CS
   PF13181.1   7 lGdiYrqlGdy 17 
                 + ++Y+q  + 
  MMETSP0890-20130614|3693_1 330 QYSCYAQQEQQ 340
                 56899998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       798  (0.0583675); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:00.75
# Mc/sec: 1249.30
//
Query:       MMETSP0890-20130614|3696_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-06   26.7   2.1      0.093   12.7   0.0    4.7  5  PF13516.1  Leucine Rich repeat
    1.1e-05   24.8   1.0    0.00053   19.4   0.2    2.8  3  PF12799.2  Leucine Rich repeats (2 copies)
     0.0072   16.0   3.6        8.1    6.8   0.0    4.2  4  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.072   13.2   7.0         24    5.6   0.1    5.2  5  PF13504.1  Leucine rich repeat
      0.074   12.7   4.2        0.9    9.2   0.3    3.3  3  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.1   1.1e+04      11      23 ..      53      65 ..      47      65 .. 0.71
   2 !   12.7   0.0   3.4e-05     0.093       1      24 []     104     127 ..     104     127 .. 0.90
   3 !    7.9   0.0    0.0012       3.3       1      15 [.     132     146 ..     132     158 .. 0.87
   4 ?    0.2   0.0      0.37     1e+03       4      13 ..     166     175 ..     163     181 .. 0.86
   5 ?    0.3   0.0      0.35   9.5e+02       2      11 ..     190     201 ..     189     220 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.1
   PF13516.1 11 nNqigdeGlsaLa 23
                + ++ d+G  aL+
  MMETSP0890-20130614|3696_1 53 KYKLRDKGGAALG 65
                5578899999885 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 3.4e-05
   PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                 +++ ++LdLs+N i+d   + Lan
  MMETSP0890-20130614|3696_1 104 NTSVEWLDLSGNMIDDYSGQELAN 127
                 6889************99999886 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0012
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 +++L++Ld+s+N +g
  MMETSP0890-20130614|3696_1 132 NSSLRVLDISRNLLG 146
                 789*********986 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.37
   PF13516.1   4 LtsLdLsnNq 13 
                 +t+L L++N+
  MMETSP0890-20130614|3696_1 166 ITELKLGKNP 175
                 89******97 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.35
   PF13516.1   2 knLt..sLdLsn 11 
                 +nL+   L+Ls+
  MMETSP0890-20130614|3696_1 190 PNLKalRLNLSH 201
                 799944446664 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   5.8e-05      0.16       6      40 ..      78     121 ..      68     127 .. 0.72
   2 !   19.4   0.2   1.9e-07   0.00053       1      36 [.     105     145 ..     105     148 .. 0.82
   3 ?   -0.6   0.1      0.35   9.5e+02      23      31 ..     189     197 ..     165     205 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.8e-05
   PF12799.2   6 LdLsnN.........nIkdlppelanLpnLktLnLsnNpisdls 40 
                 L+L ++         ++   +  + + ++ + L+Ls+N i+d s
  MMETSP0890-20130614|3696_1  78 LSLKDCelcgpatrdRLRTFSKGIEKNTSVEWLDLSGNMIDDYS 121
                 55555555555554456666666999*************99976 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.9e-07
   PF12799.2   1 tnLevLdLsnNnIkdlppe.....lanLpnLktLnLsnNpi 36 
                 t+ e LdLs+N I d +++     l + ++L++L++s+N +
  MMETSP0890-20130614|3696_1 105 TSVEWLDLSGNMIDDYSGQelanaLTQNSSLRVLDISRNLL 145
                 57899**********88855444466789**********65 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.35
   PF12799.2  23 LpnLktLnL 31 
                  pnLk L L
  MMETSP0890-20130614|3696_1 189 APNLKALRL 197
                 456665533 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.15   4.2e+02       5      16 ..      68      79 ..      67      97 .. 0.76
   2 !    5.7   0.0    0.0063        17       2      13 ..     107     118 ..     106     130 .. 0.81
   3 !    6.8   0.0    0.0029       8.1       1      13 [.     134     146 ..     134     174 .. 0.77
   4 ?   -2.2   0.1       2.6   7.2e+03       4       9 ..     196     201 ..     195     204 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.15
                EEETSSBCBCHH CS
  PF00560.28  5 LdLsgNnltslp 16
                L+L+g+++ +l+
  MMETSP0890-20130614|3696_1 68 LSLNGCRVVTLS 79
                778888777655 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0063
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                  e LdLsgN + 
  MMETSP0890-20130614|3696_1 107 VEWLDLSGNMID 118
                 689******986 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0029
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 +L++Ld+s+N l 
  MMETSP0890-20130614|3696_1 134 SLRVLDISRNLLG 146
                 79********886 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.6
                 EEEETS CS
  PF00560.28   4 eLdLsg 9  
                 +L+Ls+
  MMETSP0890-20130614|3696_1 196 RLNLSH 201
                 699998 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.073     2e+02       6      16 ..      68      78 ..      66      87 .. 0.81
   2 ?    2.1   0.0      0.13   3.4e+02       2      14 ..     106     118 ..     105     125 .. 0.81
   3 ?    5.6   0.1    0.0087        24       1      12 [.     133     144 ..     133     149 .. 0.86
   4 ?   -1.5   0.0       1.9   5.2e+03       4      17 .]     167     180 ..     165     180 .. 0.82
   5 ?    1.6   0.1      0.18   4.8e+02       1       9 [.     190     200 ..     190     217 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.073
   PF13504.1  6 LdLsgnrLtsL 16
                L+L+g+r  +L
  MMETSP0890-20130614|3696_1 68 LSLNGCRVVTL 78
                88999997766 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.13
   PF13504.1   2 nLkeLdLsgnrLt 14 
                 + + LdLsgn ++
  MMETSP0890-20130614|3696_1 106 SVEWLDLSGNMID 118
                 5677******765 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0087
   PF13504.1   1 pnLkeLdLsgnr 12 
                 ++L++Ld+s+n 
  MMETSP0890-20130614|3696_1 133 SSLRVLDISRNL 144
                 58********95 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.9
   PF13504.1   4 keLdLsgnrLtsLP 17 
                 +eL L  n+ + LP
  MMETSP0890-20130614|3696_1 167 TELKLGKNPTDGLP 180
                 78999999977777 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.18
   PF13504.1   1 pnLkeLdL..s 9  
                 pnLk L+L  s
  MMETSP0890-20130614|3696_1 190 PNLKALRLnlS 200
                 79999998442 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0046        13      36      61 .]      93     117 ..      90     117 .. 0.75
   2 ?    9.2   0.3   0.00033       0.9       3      36 ..     107     144 ..     105     148 .. 0.47
   3 ?   -0.5   0.2      0.34   9.3e+02      25      32 ..     190     197 ..     164     203 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0046
   PF13855.1  36 nlksispeafkgLpsLreLnLsgNrl 61 
                 +l ++s+++ ++ +s+++L+LsgN++
  MMETSP0890-20130614|3696_1  93 RLRTFSKGI-EKNTSVEWLDLSGNMI 117
                 566777655.6667999******997 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00033
   PF13855.1   3 LkeLdLsnNrlkvi....pdgaFkglsnLkvLdLsgnn 36 
                 ++ LdLs+N + +       +a+ + s+L+vLd+s+n 
  MMETSP0890-20130614|3696_1 107 VEWLDLSGNMIDDYsgqeLANALTQNSSLRVLDISRNL 144
                 44455555545444322222344444666666666554 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.34
   PF13855.1  25 snLkvLdL 32 
                 +nLk L L
  MMETSP0890-20130614|3696_1 190 PNLKALRL 197
                 44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.80
# Mc/sec: 946.56
//
Query:       MMETSP0890-20130614|3699_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-16   58.6   0.0    1.5e-15   57.4   0.0    1.7  1  PF00005.22 ABC transporter
    5.9e-05   23.0   0.0       0.46   10.2   0.0    2.6  3  PF13304.1  AAA domain
    0.00013   21.1   0.8      0.092   11.8   0.0    2.4  2  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0062   16.7   0.1     0.0062   16.7   0.0    2.1  3  PF13476.1  AAA domain
     0.0086   15.4   0.0      0.021   14.2   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.014   15.7   0.1      0.044   14.1   0.0    2.0  2  PF08477.8  Miro-like protein
       0.04   13.7   0.1        0.1   12.5   0.1    2.0  1  PF01926.18 50S ribosome-binding GTPase
      0.064   12.3   0.1       0.12   11.4   0.1    1.6  1  PF12846.2  AAA-like domain
       0.17   11.5   1.2       0.25   11.0   0.1    1.7  2  PF01935.12 Domain of unknown function DUF87


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0     1e-18   1.5e-15       1     118 []     150     275 ..     150     275 .. 0.92

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 1e-18
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--............----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk............srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 S+Ll++++++ +   g++ +d+   d++ ++l++lr  i++ipq+p+lf + +vr n+  + ++   d++i ++le+ +l   l+             + +s+ S G++q ++lAral+ k+k+ ++DE+t+
  MMETSP0890-20130614|3699_1 150 SSLLAAICRLHQVCGGRVVIDG--IDVSTIPLSRLRgaIAWIPQSPTLF-SGSVRFNVGLGARS---DAEILAALEEAKLLTNLNPlqqrqlldkpvdEAGSNWSSGEQQLLCLARALVLKRKICCIDEATA 275
                 89*******************4..466999*******************.********999876...7999999999988887776778899999999********************************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   2.8e+03      85     111 ..      51      77 ..      28      95 .. 0.55
   2 !   10.2   0.0   0.00032      0.48       2      24 ..     139     161 ..     138     211 .. 0.80
   3 !   10.2   0.0    0.0003      0.46     187     272 ..     235     279 ..     195     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.8
   PF13304.1  85 ewlfeyekkkeeliflrkrsleeydkk 111
                 e  ++y++  e  + ++k+++++ + +
  MMETSP0890-20130614|3699_1  51 ETESTYDEEDELQYEKKKNDFFSRPAF 77 
                 333333333333333333333333333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00032
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfr 24 
                 n+++G+ g+GKS+lL a+  l +
  MMETSP0890-20130614|3699_1 139 NGVCGRTGAGKSSLLAAICRLHQ 161
                 7899**************99976 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.0003
   PF13304.1 187 llikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHP 272
                 ll+k   +++   s++                                   S+G+++ll l+ al       ++ +iDE  ++ ++
  MMETSP0890-20130614|3699_1 235 LLDK---PVDEAGSNW-----------------------------------SSGEQQLLCLARALVLKR---KICCIDEATASVDY 279
                 3333...333333333...................................****************99...*******9998876 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0013       1.9      26      45 ..     138     157 ..     128     160 .. 0.86
   2 !   11.8   0.0   6.1e-05     0.092     136     206 ..     246     314 ..     198     323 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
                 EEEE--------HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  26 ftaivGpNGSGKsnvldAil 45 
                  + + G+ G+GKs++l Ai+
  MMETSP0890-20130614|3699_1 138 KNGVCGRTGAGKSSLLAAIC 157
                 4789**************96 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 6.1e-05
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH..HH-BTBEEEEE-S-HHHHTT-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk..eksknaQfivislreemlekad 206
                 + S Ge++L+ la  + ++    + ++++De  a  D    +++ + l+  ++ k+a +++i++r +++ ++d
  MMETSP0890-20130614|3699_1 246 NWSSGEQQLLCLARALVLK----RKICCIDEATASVDYDTDAQIQNTLReaHTFKSATLLIIAHRIRTILDSD 314
                 7899999998877665554....4699**********************44456789*******998877665 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.6     4e+03     179     185 ..      60      66 ..      29      85 .. 0.51
   2 !   16.7   0.0   4.1e-06    0.0062      13      40 ..     129     157 ..     125     161 .. 0.83
   3 ?   -2.6   0.1       3.5   5.3e+03     158     158 ..     335     335 ..     272     363 .. 0.50

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.6
   PF13476.1 179 qeeekek 185
                 +e ++ek
  MMETSP0890-20130614|3699_1  60 DELQYEK 66 
                 1111111 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 4.1e-06
   PF13476.1  13 qeidFskg.ltlItGpNGsGKTTildAic 40 
                  ++ F+ g  + ++G +G+GK+++l Aic
  MMETSP0890-20130614|3699_1 129 ITCTFNAGtKNGVCGRTGAGKSSLLAAIC 157
                 5667777645899***************9 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 3.5
   PF13476.1 158 e 158
                 +
  MMETSP0890-20130614|3699_1 335 Q 335
                 1 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-05     0.021      23      45 ..     136     158 ..     126     164 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.4e-05
   PF13555.1  23 gkntlltGasGsGKSTllDAiqt 45 
                 g++  + G++G+GKS+ll Ai  
  MMETSP0890-20130614|3699_1 136 GTKNGVCGRTGAGKSSLLAAICR 158
                 4567799*************976 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.3   6.5e+03      31      56 ..      50      74 ..      39      98 .. 0.51
   2 ?   14.1   0.0   2.9e-05     0.044       3      25 ..     140     162 ..     138     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4.3
   PF08477.8 31 eeikgdtlavktlevdvdtellelwd 56
                +e++++    ++l+ +++++ + +  
  MMETSP0890-20130614|3699_1 50 LETESTYDEEDELQYEKKKNDF-FSR 74
                4455555555555555555553.333 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.9e-05
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp 25 
                  v+G +g+GKssll+++++  ++
  MMETSP0890-20130614|3699_1 140 GVCGRTGAGKSSLLAAICRLHQV 162
                 69***************988766 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.6e-05       0.1       3      21 ..     140     158 ..     138     336 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.6e-05
                 EEE--TT---HHHHHHHHC CS
  PF01926.18   3 aivGrpNvGKStLinaLtg 21 
                 ++ Gr+ +GKS+L+ a+++
  MMETSP0890-20130614|3699_1 140 GVCGRTGAGKSSLLAAICR 158
                 789**************94 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.1e-05      0.12       6      35 ..     141     170 ..     139     301 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.1e-05
   PF12846.2   6 ilGppGsGKSvllkklvlqllargprvvii 35 
                 ++G +G+GKS+ll ++++ +   g+rvvi 
  MMETSP0890-20130614|3699_1 141 VCGRTGAGKSSLLAAICRLHQVCGGRVVID 170
                 89**************99999999999984 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.5   5.3e+03     158     184 ..      52      78 ..      34      88 .. 0.55
   2 ?   11.0   0.1   0.00016      0.25      26      45 ..     139     158 ..     135     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.5
  PF01935.12 158 elrklknqairrlldklerllrkggsf 184
                 +++  +++ + ++++k++++++++++ 
  MMETSP0890-20130614|3699_1  52 TESTYDEEDELQYEKKKNDFFSRPAFY 78 
                 333444455555666666666666555 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00016
  PF01935.12  26 lAilgsTGsGKSntvavLle 45 
                 +++ g+TG+GKS + a +++
  MMETSP0890-20130614|3699_1 139 NGVCGRTGAGKSSLLAAICR 158
                 79***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.67
# Mc/sec: 1319.78
//
Query:       MMETSP0890-20130614|3706_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00017   21.2   0.6     0.0039   16.9   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.025   12.6   0.0      0.025   12.6   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   5.8e-07    0.0039      24      39 .]       2      17 ..       1      17 [. 0.93
   2 ?    3.3   0.0      0.01        72      15      22 ..      34      41 ..      21      44 .] 0.75

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.8e-07
                TEEEEEETTSEEEEEE CS
  PF00400.27 24 pllasgSrDgtirlWd 39
                ++++s S+D+t r+Wd
  MMETSP0890-20130614|3706_1  2 NRVVSVSYDKTARIWD 17
                689************9 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.01
                EEEEEESS CS
  PF00400.27 15 tcvafspd 22
                 +++fsp+
  MMETSP0890-20130614|3706_1 34 FSCDFSPN 41
                58999998 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.7e-06     0.025     234     255 ..       4      25 ..       1      44 [] 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.7e-06
   PF11715.3 234 vftlsrDgkLRvWnletgqclr 255
                 v+++s D++ R+W+ +tg  l+
  MMETSP0890-20130614|3706_1   4 VVSVSYDKTARIWDADTGEVLS 25 
                 789**************99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 164.75
//
Query:       MMETSP0890-20130614|3704_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.72
# Mc/sec: 702.27
//
Query:       MMETSP0890-20130614|3705_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-25   87.2   6.0      1e-24   86.7   4.1    1.2  1  PF03357.16 Snf7
  ------ inclusion threshold ------
       0.04   13.7   0.5      0.065   13.0   0.3    1.3  1  PF12307.3  Protein of unknown function (DUF3631)
      0.052   13.2   0.0      0.093   12.4   0.0    1.4  1  PF11728.3  DUF939 C-terminal domain
      0.062   11.9   2.7      0.074   11.7   1.9    1.1  1  PF13729.1  F plasmid transfer operon, TraF, protein
       0.61    9.9   5.7       0.37   10.6   1.8    2.0  2  PF03979.9  Sigma-70 factor, region 1.1


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   4.1   3.8e-28     1e-24      52     168 ..       1     123 [.       1     126 [. 0.91

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 3.8e-28
  PF03357.16  52 ryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrslddadeedEeeldaeLdaLeqelgdeel........esvelpsvPs 168
                 +ye +++++ g + +leq++ aie++ +n e+++am  g +am +++ ++ +d++ +lmd+i+d++e+a+ i ea+s + +  +  d+e+l +eL++Le+ +++++l        ++ +lp+vP+
  MMETSP0890-20130614|3705_1   1 MYEGEIEKINGARLTLEQQMIAIEGTVTNSETVKAMTAGKDAMAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPAN--QVLDDEDLLNELNELEELELESQLldapavpaTAIDLPDVPT 123
                 79*****************************************************************************95..79**************99888885566666666666666666 PP

>> PF12307.3  Protein of unknown function (DUF3631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   2.4e-05     0.065      67     132 ..      35      99 ..      32     109 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-05
   PF12307.3  67 AdaaGgeWperAraaalk.llaeaeereevslgvrLLrDirevfeekdedrlstaeLlaaLkedees 132
                 A++aG++ +++Ara ++  ++ e  ++   + +v+  +Di+e+ +++ ++ l  ++Ll++L+e ee 
  MMETSP0890-20130614|3705_1  35 AMTAGKDAMAKARAGVTVdDVGELMDD--ITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEEL 99 
                 889999999999986655055565555..9**********************************996 PP

>> PF11728.3  DUF939 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.4e-05     0.093      84     134 ..      54     104 ..      49     114 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.4e-05
   PF11728.3  84 rmlelleslsltveqaeiiadlleeiaeslseentaeelleeleelreefr 134
                 ++ el+++++ +veqa+ ia+ ++  a+++ ++++  + l+eleel+ e +
  MMETSP0890-20130614|3705_1  54 DVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELELESQ 104
                 5678899****************************9999999999987655 PP

>> PF13729.1  F plasmid transfer operon, TraF, protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.9   2.7e-05     0.074      25     124 ..      48     145 ..      34     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.7e-05
   PF13729.1  25 vGaqvsdkdnlvdklDdlsdilDdlssaldnsdaadeaaerlagaLeeldgdkakasagvglavavPnqplsvaffakayaeaivtadvsqsdldllddv 124
                 +G++v+d+ +l+d++ d  +  +d+ +a+++  ++  + e+l ++L+el++ ++  + ++  a avP   ++   +  a+ e+ v+++ +++d ++l+++
  MMETSP0890-20130614|3705_1  48 AGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELEL--ESQLLDAPAVPATAIDLPDVPTATPEIPVQQNQEDADTKALREL 145
                 7999*******9997777777777777787766666788999999999998866..55555566688888888888888888888888888888877765 PP

>> PF03979.9  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00013      0.37      15      72 ..      43      95 ..      25     108 .. 0.78
   2 ?   -0.3   0.0      0.35   9.5e+02      53      69 ..     128     144 ..     125     148 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
                --------BHHHHHHH-S-S---HHHHHHHHHHHHH-----B--S--S-SS....--X CS
   PF03979.9 15 kgkekgylTydeineaLpedevdseqiediismledmgievveeaedseeialeeeke 72
                 +k +  +T d++ e + + + + eq  di + ++    +v++   d++  +l+e +e
  MMETSP0890-20130614|3705_1 43 MAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLD---DED--LLNELNE 95
                6899999***********999999******************9...555..2333322 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.35
                 ---B--S--S-SS.... CS
   PF03979.9  53 ievveeaedseeialee 69 
                 i+v  ++ed+++ al+e
  MMETSP0890-20130614|3705_1 128 IPVQQNQEDADTKALRE 144
                 88999999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.71
# Mc/sec: 509.65
//
Query:       MMETSP0890-20130614|3711_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 454.23
//
Query:       MMETSP0890-20130614|3707_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-07   30.4   6.1    1.5e-06   27.7   4.2    2.2  1  PF00400.27 WD domain, G-beta repeat
     0.0018   17.9   1.3     0.0033   17.1   0.7    1.6  1  PF12718.2  Tropomyosin like
     0.0025   17.5   1.2      0.016   14.9   0.8    2.2  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
     0.0026   15.5   0.8     0.0033   15.1   0.5    1.1  1  PF05483.7  Synaptonemal complex protein 1 (SCP-1)
     0.0073   14.7   3.2       0.01   14.2   2.2    1.2  1  PF02994.9  L1 transposable element
  ------ inclusion threshold ------
      0.011   15.5   2.8      0.024   14.4   0.5    2.2  2  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
      0.014   14.3   4.0      0.023   13.6   2.8    1.3  1  PF00261.15 Tropomyosin
      0.014   14.8   3.6       0.03   13.8   2.5    1.4  1  PF13874.1  Nucleoporin complex subunit 54
      0.031   13.3   0.6      0.062   12.3   0.4    1.5  1  PF04582.7  Reovirus sigma C capsid protein
      0.072   12.4   3.2       0.68    9.2   0.3    2.4  2  PF02346.11 Chordopoxvirus fusion protein
       0.18   11.7   1.2       0.35   10.8   0.8    1.4  1  PF08702.5  Fibrinogen alpha/beta chain family
       0.21   11.2   2.3        3.1    7.4   0.3    2.8  3  PF01920.15 Prefoldin subunit
       0.24   11.2   6.1       0.36   10.6   0.6    2.9  3  PF05377.6  Flagella accessory protein C (FlaC)
       0.38    9.8   7.4        6.3    5.8   2.0    2.4  2  PF01213.14 Adenylate cyclase associated (CAP) N terminal
       0.43   10.6   7.0        2.4    8.2   4.8    2.3  1  PF10279.4  Latarcin precursor
       0.81    9.5   3.3       0.98    9.2   1.1    2.0  2  PF10779.4  Haemolysin XhlA


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   4.2   1.7e-09   1.5e-06       4      39 .]       7      50 ..       5      50 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.7e-09
                EEEEESSSSSEEEEEEESSSTEEEEEE........TTSEEEEEE CS
  PF00400.27  4 katlrgHtspVtcvafspdgpllasgS........rDgtirlWd 39
                + tl+gH+s V+++a+spdg++lasgS         D+++r+Wd
  MMETSP0890-20130614|3707_1  7 ICTLTGHSSIVWALAYSPDGCVLASGSgdeefesaGDSSVRIWD 50
                579************************99999999999999998 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.7   3.9e-06    0.0033       8      76 ..     200     268 ..     193     280 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.9e-06
   PF12718.2   8 EaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae 76 
                 E    + ++e++e+++ ++e +++++E+ i++++ +++++E+ + ++e  ++e+++ +e+ + +  + +
  MMETSP0890-20130614|3707_1 200 EHGYIIYRMEQVENRMTNVEGRMTNAENRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLK 268
                 55556779************************************************9998776555544 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.8   1.9e-05     0.016      72     121 ..     190     248 ..     160     270 .. 0.54
   2 ?    3.2   0.0     0.076        65      43      85 ..     239     273 ..     232     281 .. 0.43

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.9e-05
   PF04513.7  72 Ltdalnalq..........dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlg 121
                 L+  +  lq          ++++n++tn++  +tn  + +tN++  ++n  + + n+ +g
  MMETSP0890-20130614|3707_1 190 LQLRVDCLQdehgyiiyrmEQVENRMTNVEGRMTNAENRITNVEGRMTNAENRITNV-EG 248
                 333333333333333344556666666666666666666666666666655555555.22 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.076
   PF04513.7  43 ietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrn 85 
                  e+++++++ +++        ++ + ++n+++ l +l++++r+
  MMETSP0890-20130614|3707_1 239 AENRITNVEGRVE--------EVRAYAENIDANLVKLKKQIRK 273
                 2233333332222........3444444444444444444444 PP

>> PF05483.7  Synaptonemal complex protein 1 (SCP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   3.9e-06    0.0033     531     634 ..     182     291 ..     161     350 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.9e-06
   PF05483.7 531 rmlkqietleeketnlrdelesv..r.kelkqkrdevkckldkseenarsieyevlkkekqlkilenkcnnlkkqvenkskyieelq.qenkalkkkssaesk..qlnvy 634
                  m+ q+e+l+ +   l+de  ++  r +++ ++  +v  ++ ++e+   ++e  + + e+++  +e ++++++   en + ++ +l+ q  k lk+k++a s    ln+ 
  MMETSP0890-20130614|3707_1 182 GMISQLEKLQLRVDCLQDEHGYIiyRmEQVENRMTNVEGRMTNAENRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKkQIRKHLKRKAAASSAsaFLNIM 291
                 5999***************999833313344566899********************************************99999626789*****9987641145655 PP

>> PF02994.9  L1 transposable element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.2   1.2e-05      0.01      99     190 ..     179     273 ..     111     280 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
                 XXXXXXXXXXXXXXXXXXXX............................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02994.9  99 elmelkkklkelkeeveaikkeqseatldietlkkksgvvdlsis...nriqeleerisgaedsieeikstvkenekrkklleqniqeiqdsvrr 190
                 ++  ++ +l +l+  v++++ e+      +e+ +++   v+  ++   nri ++e r++ ae+ i +++  v e   + +    n+  ++ ++r+
  MMETSP0890-20130614|3707_1 179 RFTGMISQLEKLQLRVDCLQDEHGYIIYRMEQVENRMTNVEGRMTnaeNRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRK 273
                 466789********************************99976653337***********************99999999999999888888876 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.39   3.3e+02      64     107 ..     180     226 ..     130     237 .. 0.68
   2 ?   14.4   0.5   2.8e-05     0.024      61     120 ..     233     292 ..     223     297 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.39
   PF06148.6  64 Lvglqeeleelesplaaarkk...vesvrsklseveeeveskikekk 107
                  +g+ ++le+l+  +  ++++   +   ++++++++++ve+++ +++
  MMETSP0890-20130614|3707_1 180 FTGMISQLEKLQLRVDCLQDEhgyIIYRMEQVENRMTNVEGRMTNAE 226
                 56777777777766666666522233344444444444554444443 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.8e-05
   PF06148.6  61 SgsLvglqeeleelesplaaarkkvesvrsklseveeeveskikekkdleeekellklll 120
                  g+++  ++++ ++e+ ++++r   e++ ++l + ++++++ +k+k+++ +++++l+++ 
  MMETSP0890-20130614|3707_1 233 EGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRKHLKRKAAASSASAFLNIMT 292
                 567788899***********************************************9996 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.8   2.7e-05     0.023      55     151 ..     176     272 ..     134     282 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.7e-05
  PF00261.15  55 seerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlkeakeiaeeadrkyeEvarklvvvekdLeraeeraeaaeskiaeLeeelk 151
                 ++ r +   ++Le+++ + d  +     +  r+ + ++++++ e  +++a+++  + + +++ ++ +++ ve+ +e+ ++ ae+ ++  ++L+ +++
  MMETSP0890-20130614|3707_1 176 ADVRFTGMISQLEKLQLRVDCLQDEHGYIIYRMEQVENRMTNVEGRMTNAENRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIR 272
                 5555555555555555555555555555556666666666666666666666666666666666666666666666666666666666666666555 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.5   3.5e-05      0.03      33     122 ..     188     277 ..     182     291 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.5e-05
   PF13874.1  33 eeLakRveaQreevkqlrerlkeineklkelqkhdletskrieeakqkhqelshrllkvaakleilrnkgyalsaeeeelrnkleqleke 122
                 e+L+ Rv + ++e  +   r++++++++++++++ ++ ++ri++++ + ++ ++r+++v  ++e  r    +++a+  +l+++  +  k+
  MMETSP0890-20130614|3707_1 188 EKLQLRVDCLQDEHGYIIYRMEQVENRMTNVEGRMTNAENRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRKHLKR 277
                 678888888899999999999999999999999999999999999999999999999999999999999888877777777766655554 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   7.3e-05     0.062      30     102 ..     215     289 ..     207     327 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.3e-05
   PF04582.7  30 ltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaa.lqssv.dslsselad 102
                 +t+v  r+t+ e     ++  ++++ +++++++  +++v    +++ a+l +l++++++ l+    +s++s   +
  MMETSP0890-20130614|3707_1 215 MTNVEGRMTNAENRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRKhLKRKAaASSASAFLN 289
                 79999999999999999999******************9999999********9999862443320223232222 PP

>> PF02346.11  Chordopoxvirus fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.056        47       2      35 ..     186     219 ..     185     221 .. 0.90
   2 ?    9.2   0.3    0.0008      0.68       2      52 ..     221     271 ..     220     273 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.056
  PF02346.11   2 rlkdlekrllvlekkfqtivkcckrleealkRLE 35 
                 +l++l +r+  l++++  i+ +++++e+++  +E
  MMETSP0890-20130614|3707_1 186 QLEKLQLRVDCLQDEHGYIIYRMEQVENRMTNVE 219
                 7899999*******************99998777 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0008
  PF02346.11   2 rlkdlekrllvlekkfqtivkcckrleealkRLEnHletlRkamlnLakKI 52 
                 r+++ e+r++++e   ++ +++  ++e +++ +   +e + +++++L k I
  MMETSP0890-20130614|3707_1 221 RMTNAENRITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQI 271
                 57899*******************************************998 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00041      0.35      36     130 ..     185     274 ..     173     286 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00041
                 HHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  36 kkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdiaqk 130
                  ++ekl+ +++ l++++  i   ++++++ + + +    + +n+     +++e ++ +  e++i++ e ++++ +   ++   ++ +L+++i + 
  MMETSP0890-20130614|3707_1 185 SQLEKLQLRVDCLQDEHGYIIYRMEQVENRMTNVEGRMTNAENR----ITNVEGRM-TNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRKH 274
                 67778888888888888888888888887777776665544444....33446667.78888888888888888888888888888888888654 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.6   2.2e+03      67      99 ..     169     201 ..     164     207 .. 0.76
   2 ?    4.5   0.0      0.03        26      65      98 ..     209     242 ..     206     246 .. 0.62
   3 ?    7.4   0.3    0.0037       3.1      66     104 ..     238     276 ..     230     278 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  67 Leerketlekeiktlekqleklekeleelkeel 99 
                 +e+ + +++ + + + +qlekl+ +++ l++e+
  MMETSP0890-20130614|3707_1 169 VENAHTFADVRFTGMISQLEKLQLRVDCLQDEH 201
                 566667777777788888999988888888775 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  65 eeLeerketlekeiktlekqleklekeleelkee 98 
                 e++e+r+ ++e ++++ e++++++e ++++ ++ 
  MMETSP0890-20130614|3707_1 209 EQVENRMTNVEGRMTNAENRITNVEGRMTNAENR 242
                 4666666666666666666666666666666554 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- CS
  PF01920.15  66 eLeerketlekeiktlekqleklekeleelkeelykklq 104
                 + e+r+ ++e ++++++   e++ ++l +lk++++k l+
  MMETSP0890-20130614|3707_1 238 NAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRKHLK 276
                 668899999999999999999999999999999998776 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.078        67       1      25 [.     207     231 ..     207     234 .. 0.86
   2 ?   10.6   0.6   0.00042      0.36       1      37 [.     228     264 ..     228     276 .. 0.70
   3 ?   -3.1   0.0         8   6.8e+03      16      31 ..     443     458 ..     440     465 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.078
   PF05377.6   1 kideLEnklsklstvvatvrkelee 25 
                 +++++En++ +++  ++++++ + +
  MMETSP0890-20130614|3707_1 207 RMEQVENRMTNVEGRMTNAENRITN 231
                 8999*********999999987765 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00042
   PF05377.6   1 kideLEnklsklstvvatvrkeleelsksvekikenv 37 
                 +i+++E ++ + +  +++v+  +ee+++  e+i+ n 
  MMETSP0890-20130614|3707_1 228 RITNVEGRMTNAENRITNVEGRVEEVRAYAENIDANL 264
                 6777777777777777777777777777777777775 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 8
   PF05377.6  16 vatvrkeleelsksve 31 
                 +  +++  ++l+++++
  MMETSP0890-20130614|3707_1 443 LGDAKATFSQLKEDLD 458
                 5567889999999886 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0078       6.7       4      75 ..     204     279 ..     202     299 .. 0.65
   2 ?    5.8   2.0    0.0074       6.3     222     265 ..     410     453 ..     390     465 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0078
                 XXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHH-S----HH CS
  PF01213.14   4 llkRLeaatsRLEavseslankhras....gtasepsaavagdpasveafdelvakalsefvelskklggeveeqa 75 
                 ++ R+e++ +R+ +v+  ++n  +      g  ++ ++ + ++   ve+   + ++  +++v+l k++  +++ +a
  MMETSP0890-20130614|3707_1 204 IIYRMEQVENRMTNVEGRMTNAENRItnveGRMTNAENRITNVEGRVEEVRAYAENIDANLVKLKKQIRKHLKRKA 279
                 6789999999999999776654332244554455555556666666666666666666677888888877776655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0074
                 -XXXXXXXXXXXXXXXXXXXX.........XXXXXX...XXXXXX CS
  PF01213.14 222 laavsasktaaPppPpppppPsvdtik.dsvesaksdskgslgav 265
                 +a++s  +++ PppPp + +P+++  +   + ++  d+k   +++
  MMETSP0890-20130614|3707_1 410 AATLSDDASTLPPPPPST-APKAPSASaLPTAATLGDAKATFSQL 453
                 234444555555555544.45444444033444555555555554 PP

>> PF10279.4  Latarcin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.8    0.0029       2.4      24      79 ..     220     273 ..     160     279 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0029
                 ................XXXXXXXXXXXXXXXXXXXXX------HHHHHHHHHHHHH CS
   PF10279.4  24 rklmemvnnlRkvqgRLeemvenlrkvedledtEEARgafkklkdkfkkmgeklkk 79 
                  ++++  n++ +v+gR+ ++ + + +ve++   EE R + +++  ++ k+++++ k
  MMETSP0890-20130614|3707_1 220 GRMTNAENRITNVEGRMTNAENRITNVEGR--VEEVRAYAENIDANLVKLKKQIRK 273
                 4578999***********************..*****9877776665554444433 PP

>> PF10779.4  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.1    0.0012      0.98       1      47 [.     208     254 ..     208     264 .. 0.86
   2 ?   -1.8   0.0       3.1   2.7e+03       3      22 ..     259     278 ..     257     289 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
   PF10779.4   1 vqdikerlnrietklkeeekaenalEkadaalekqiknlnkdLskIk 47 
                 ++++++r++++e +  + e ++++ E + +  e  i n++ ++++++
  MMETSP0890-20130614|3707_1 208 MEQVENRMTNVEGRMTNAENRITNVEGRMTNAENRITNVEGRVEEVR 254
                 57889999999999999999999999999999999999999988865 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.1
   PF10779.4   3 dikerlnrietklkeeekae 22 
                 +i+  l+++++ + ++ k++
  MMETSP0890-20130614|3707_1 259 NIDANLVKLKKQIRKHLKRK 278
                 45555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       933  (0.0682417); expected 273.4 (0.02)
Passed bias filter:                      583  (0.0426419); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:01.14
# Mc/sec: 1066.90
//
Query:       MMETSP0890-20130614|3717_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-14   50.5   0.8    1.2e-13   50.2   0.5    1.2  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.056   11.6   0.0      0.059   11.5   0.0    1.0  1  PF02239.11 Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.5   1.7e-17   1.2e-13       3      39 .]      15      51 ..      13      51 .. 0.96

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 1.7e-17
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++tl+gHt+ ++c++fs dg+++++gS+D t ++Wd
  MMETSP0890-20130614|3717_1 15 LIQTLEGHTDVISCCRFSKDGRRVVTGSWDFTAKIWD 51
                689*********************************9 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.7e-06     0.059     297     348 ..       6      54 ..       2      59 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.7e-06
                 EEEECCGTEEEE-HHHHHT--EEEEEE-----EEEEEEE----EEEEEETTT CS
  PF02239.11 297 aviDsktleivltlaesaglkvvqvEfnkdGdevwlSvwdgkdalvvyDdkt 348
                  ++D++t   ++tl+ +++  +    f+kdG++v    wd      ++D+ t
  MMETSP0890-20130614|3717_1   6 FIFDTETTRLIQTLEGHTD-VISCCRFSKDGRRVVTGSWDFT--AKIWDAVT 54 
                 4677777777777777777.5556677777777777777766..45666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.38s 00:00:00.65 Elapsed: 00:00:01.13
# Mc/sec: 126.12
//
Query:       MMETSP0890-20130614|3715_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.99
# Mc/sec: 467.17
//
Query:       MMETSP0890-20130614|3720_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.096   12.0   0.0        0.1   11.9   0.0    1.1  1  PF09347.5 Domain of unknown function (DUF1989)


Domain annotation for each model (and alignments):
>> PF09347.5  Domain of unknown function (DUF1989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.3e-06       0.1      42      78 ..      29      65 ..       4      70 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.3e-06
                --BB-HHHHHHHHTSSS-----EEEBTTSSEEEEEEE CS
   PF09347.5 42 serlsaadTrklqhtaylttgdrllsnrgrplltive 78
                 + ++ + T++  + + +  g++l+++ ++ lltive
  MMETSP0890-20130614|3720_1 29 GNSFNRSITLRQLRDSRPHNGKSLWDSTENQLLTIVE 65
                4778889999999**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:01.55
# Mc/sec: 117.50
//
Query:       MMETSP0890-20130614|3716_1  [L=826]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-49  167.8  38.2      2e-49  167.8  26.5    4.4  4  PF07780.7  Spb1 C-terminal domain
    1.7e-42  145.3   0.0    2.9e-42  144.5   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase
      3e-21   75.4   7.8      3e-21   75.4   5.4    4.9  5  PF11861.3  Domain of unknown function (DUF3381)
  ------ inclusion threshold ------
      0.018   12.7   0.0      0.035   11.8   0.0    1.4  1  PF14314.1  Virus-capping methyltransferase


Domain annotation for each model (and alignments):
>> PF07780.7  Spb1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   7.3       3.5   1.2e+04       9      59 ..     289     340 ..     281     345 .. 0.43
   2 ?    1.0   0.6     0.062   2.1e+02     120     158 ..     332     370 ..     321     378 .. 0.70
   3 ?   -1.9   1.1      0.48   1.7e+03       5      56 ..     394     453 ..     389     458 .. 0.38
   4 !  167.8  26.5   5.9e-53     2e-49      18     218 .]     609     811 ..     483     813 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 3.5
   PF07780.7   9 eeevvkeeekeekkdkdeekeedesekeedldettaealalakkla.rkktr 59 
                 e++  ++++++++++++ee+ee++ + +e +d++  +a a a   a r+k+r
  MMETSP0890-20130614|3716_1 289 EMQALNQKKDDDSNHTEEEEEEEDISPDELIDNELDRARAFAAAEArREKKR 340
                 2222223333333333333333333344466666666666666655444443 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.062
   PF07780.7 120 aEAkaRkkkraekkleklkk.kaeaiaededisekeKake 158
                 aEA+ R kkr+ +k +kl++ +a+ i+e+++++ +  +++
  MMETSP0890-20130614|3716_1 332 AEAR-REKKRERRKEQKLRSrRAAGIVETSNVDLEGNTHS 370
                 5665.56667777777777526888999988766555555 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.48
   PF07780.7   5 deddeeevvkeeekeekkdkdeekeedesekee.........dldettaealalakklark 56 
                 d+d++++++k++++ +  + ++e e +e   ee           +++t     l + l+r+
  MMETSP0890-20130614|3716_1 394 DDDANQDTKKNKANARYVEYNSERE-REAAVEEdldeayrafAERRATRSGHGLTERLVRR 453
                 3333344333333333333222222.22222221333344333333455555555555555 PP

  == domain 4    score: 167.8 bits;  conditional E-value: 5.9e-53
   PF07780.7  18 keekkdkdeekeedesekeedldettaealalakklarkktredliddaynryafkdedglPdWFvdDEkkhnkpekpitkeavaaikeklkelnarpiKKvaEAkaRkkkraekkleklkkkaeaiaededisekeKakeikkllkkakkkkkkakk..kvvvakkg.....nkgkkgrpkgvkgkykvVDkrmkkdkralkriakk 218
                 +e+  +     + de+++   + e++ae++ala+ ++r+++ ++l+d +ynrya++d  +lP+WFvdDEk+h +p++p+  e va++k k+++l +rp KKvaEA+aRkkkrae +l+ +k kae++a+d d++ ++K ++++k ++k ++++k  k    +vv++k+     +k+ k+++ g + ++ +VDkr+kkdkra k+ ak+
  MMETSP0890-20130614|3716_1 609 QEAPLK-----TYDENDNIPLTIEEKAETMALATMMLRRSKAKQLVDASYNRYAWNDPRDLPEWFVDDEKRHYRPQLPLRPELVAEMKSKFQALSSRPAKKVAEARARKKKRAELRLKAAKRKAESVANDPDMTPNQKLRAVEKAMAKGARANKIDKPskIYVVQRKSktggiSKKGKSTGAGKNARVVLVDKRLKKDKRADKANAKR 811
                 222111.....12222222366667*************************************************************************************************************************998776664443459******9999998999999999********************99984 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.0   8.6e-46   2.9e-42      20     181 .]       4     168 ..       1     168 [. 0.94

  Alignments for each domain:
  == domain 1    score: 144.5 bits;  conditional E-value: 8.6e-46
  PF01728.14  20 kvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttlqgditdpstqekilealeege...rkvdlvlsDgapdvtgvhdldeyislqlilaalklalel.lkpggnfvlklfkgeeaeellkqlrkfFekvsvvkpkasrkesseeflvclgf 181
                 +  k+k+v+Dl+aaPGgwsqv+ + + + + ++avDl  ++p+++v+t+ gdit+++t   +++  +++    + vd+ l+Dgap+v    + d++++++  laalk+a+e+ lk++g+fv+k+++g++ ++ll ++ ++Fe+v+ +kp+asr++s+e+f++c+++
  MMETSP0890-20130614|3716_1   4 NS-KTKVVLDLCAAPGGWSQVATRCVSNDAAIIAVDLLGIRPIPNVRTIIGDITTQETRTAVRRETRDALggeNGVDIALCDGAPNVGAAYARDAFVQNEISLAALKCAIECgLKKNGTFVTKVYRGRDYNALLWAFGRLFERVRAFKPAASRNQSAEIFVICQQY 168
                 45.689**************************************************99999999877533677**********************************887766**************************************************985 PP

>> PF11861.3  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   5.4   8.8e-25     3e-21       5     157 ..     208     351 ..     202     354 .. 0.78
   2 ?   -2.1   1.2      0.63   2.1e+03     100     125 ..     403     431 ..     386     472 .. 0.54
   3 ?   -0.7   4.8      0.23   7.7e+02     126     154 ..     513     549 ..     474     581 .. 0.64
   4 ?   -3.2   2.3       1.3   4.5e+03      87     133 ..     711     749 ..     691     772 .. 0.49
   5 ?   -4.5   4.2       3.4   1.2e+04     122     150 ..     795     815 ..     776     826 .] 0.54

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 8.8e-25
   PF11861.3   5 ekkkrkreGYeegdttl..yktisaseFiksedpvdlLgkvnkisfddalkaikkhkktteEikelckDLkvLGkkdlkkLLkWRkkvrkelgekekkkek..eeeeeeeeveekdeeeqideelkellekelakekreerrenerkqkeilkeqak 157
                   k+r+r+GY+++  +l    + s+s+Fi+s+dp ++L++++++++d+         ++  E+ e c DL++L ++d+++LLkWR+k r+e++  ++kk++  + +eeeee+e+ + +e id+    +l++++a + +e rre++r++++++k +++
  MMETSP0890-20130614|3716_1 208 GTKRRQRQGYADDAGALlsLPKGSLSQFISSSDPGQYLADHSSLEIDQ---------DMSLELQESCTDLQLLARSDMRQLLKWREKKRREMQALNQKKDDdsNHTEEEEEEEDISPDELIDN----ELDRARAFAAAEARREKKRERRKEQKLRSR 351
                 5799******997776645889************************55.........6778********************************999877644455555666666777777775....555666666666666666666666665554 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.63
   PF11861.3 100 kkekeeeee.......eeeveekdeeeqideel 125
                 k++ +   +       +e ++e   ee++de +
  MMETSP0890-20130614|3716_1 403 KNK-A---NaryveynSEREREAAVEEDLDEAY 431
                 111.1...1122222233333333333333333 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.23
   PF11861.3 126 k........ellekelakekreerrenerkqkeilke 154
                 +         + e+e++  k++++++ er++++i ++
  MMETSP0890-20130614|3716_1 513 SkpifnnlpSMPENEKELRKKKRKKAAERNERRIKRQ 549
                 1233333335677777777778888888888877665 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 1.3
   PF11861.3  87 Rkkvrkelgekekkkekeeeeeeeeveekdeeeqideelkellekel 133
                 Rkk r+el  k        ++ ++e  ++d ++  +++l    ek++
  MMETSP0890-20130614|3716_1 711 RKKKRAELRLK-------AAKRKAESVANDPDMTPNQKLR-AVEKAM 749
                 22222222222.......2222333333333333333333.333333 PP

  == domain 5    score: -4.5 bits;  conditional E-value: 3.4
   PF11861.3 122 deelkellekelakekreerrenerkqke 150
                 d        k l+k kr ++++ +rk+k 
  MMETSP0890-20130614|3716_1 795 D--------KRLKKDKRADKANAKRKKKV 815
                 3........33444444444444444432 PP

>> PF14314.1  Virus-capping methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     1e-05     0.035     446     515 ..     116     184 ..      93     196 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1e-05
   PF14314.1 446 LeeegvlifKTYgtilveeeknvldllgrlFksvqlvqTelsSsktSEvYvvfkklkkfv..daelvdwssl 515
                 L+++g+ + K Y  +   + + +l   grlF++v  ++  +s +++ E++v+++++   +  da+l+d  s+
  MMETSP0890-20130614|3716_1 116 LKKNGTFVTKVYRGR---DYNALLWAFGRLFERVRAFKPAASRNQSAEIFVICQQYLAPIkvDAKLLDPRSV 184
                 788888888888764...33457999*****************************98765458888887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1403  (0.102618); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.27u 0.15s 00:00:01.42 Elapsed: 00:00:01.42
# Mc/sec: 1393.94
//
Query:       MMETSP0890-20130614|3725_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0028   17.3   2.4        2.4    7.9   0.1    3.1  3  PF14261.1  Domain of unknown function (DUF4351)
  ------ inclusion threshold ------
      0.019   14.5   0.1       0.13   11.8   0.0    2.1  3  PF10802.3  Protein of unknown function (DUF2540)
      0.028   14.2   5.9        1.3    8.9   0.7    2.2  2  PF13801.1  Heavy-metal resistance
      0.039   13.4   5.1      0.048   13.1   3.6    1.1  1  PF11679.3  Protein of unknown function (DUF3275)
      0.088   13.1   1.1       0.19   12.0   0.8    1.6  1  PF09011.5  Domain of unknown function (DUF1898)
        0.1   12.4   0.1       0.16   11.8   0.0    1.3  1  PF01927.11 Protein of unknown function DUF82
       0.32   10.4  15.6      0.043   13.3   6.5    2.1  2  PF10145.4  Phage-related minor tail protein
       0.62    9.6   7.1        1.9    7.9   4.9    1.7  1  PF04216.7  Protein involved in formate dehydrogenase formation
       0.66    9.9   8.3        3.4    7.6   0.3    3.1  3  PF06013.7  Proteins of 100 residues with WXG
        1.3    8.2   5.2        5.1    6.3   3.6    1.8  1  PF02432.10 Fimbrial, major and minor subunit
        1.8    8.5   4.4         25    4.9   0.3    2.9  3  PF14026.1  Protein of unknown function (DUF4242)
        2.3    8.3  11.9        6.7    6.8   2.2    2.9  2  PF06518.6  Protein of unknown function (DUF1104)


Domain annotation for each model (and alignments):
>> PF14261.1  Domain of unknown function (DUF4351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0021       2.4      28      45 ..      33      50 ..      26      59 .. 0.82
   2 ?    2.4   0.0      0.11   1.3e+02      13      39 ..      61      86 ..      57      93 .. 0.82
   3 !    6.1   0.0     0.008       9.1      25      44 ..      91     110 ..      86     114 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0021
   PF14261.1 28 ieqIesLsleqLEnLgea 45
                 +qIe++s +qLE++ +a
  MMETSP0890-20130614|3725_1 33 LDQIENMSPDQLEEMKKA 50
                59***********98766 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.11
   PF14261.1 13 lrlLtrrfGelspelieqIesLsleqL 39
                +rlL+   G l+    +q+e+L+ eq+
  MMETSP0890-20130614|3725_1 61 MRLLKSNPGVLEMA-KKQMEKLTPEQM 86
                68888888888888.8999***99997 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.008
   PF14261.1  25 pelieqIesLsleqLEnLge 44 
                 +   +q+e++s  qLE+++ 
  MMETSP0890-20130614|3725_1  91 KAASKQLENMSPAQLEAMAN 110
                 554599**********9986 PP

>> PF10802.3  Protein of unknown function (DUF2540)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.13       5      58 ..      21      74 ..      18      90 .. 0.87
   2 ?    0.5   0.0      0.37   4.2e+02      22      40 ..      77      95 ..      74     103 .. 0.81
   3 ?   -1.4   0.0       1.5   1.7e+03      19      37 ..      96     114 ..      95     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
   PF10802.3  5 ikkidardlRYyLhklenleeidleiLkkavelkkkykrtltLseeeekIieky 58
                +k++da ++  +L ++en+   +le +kka   ++  k+++ L + +  + e  
  MMETSP0890-20130614|3725_1 21 MKDMDADTISMMLDQIENMSPDQLEEMKKAGMNPTMLKTSMRLLKSNPGVLEMA 74
                799************************************999998887777655 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.37
   PF10802.3 22 nleeidleiLkkavelkkk 40
                ++e++ +e +++a+++  k
  MMETSP0890-20130614|3725_1 77 QMEKLTPEQMAEASKAASK 95
                6899999999999997654 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.5
   PF10802.3  19 klenleeidleiLkkavel 37 
                 +len+   +le +++++++
  MMETSP0890-20130614|3725_1  96 QLENMSPAQLEAMANSAQA 114
                 6899999999988887765 PP

>> PF13801.1  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.7    0.0011       1.3      93     122 ..      14      43 ..      11      46 .. 0.91
   2 ?    8.2   0.2    0.0019       2.1      33      74 ..      72     113 ..      50     117 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0011
   PF13801.1  93 laeirearaalqarveealldaaaalspee 122
                 ++ +++a++++ a +++++ld+++ +sp++
  MMETSP0890-20130614|3725_1  14 MRMAAQAMKDMDADTISMMLDQIENMSPDQ 43 
                 677899**********************98 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0019
   PF13801.1  33 helrpaalaLpeeqrralraalrearrevralrralraarre 74 
                  + +  +++L++eq ++  +a  ++ +++++++ +++a  ++
  MMETSP0890-20130614|3725_1  72 EMAKKQMEKLTPEQMAEASKAASKQLENMSPAQLEAMANSAQ 113
                 6778889999********999999999999999888877655 PP

>> PF11679.3  Protein of unknown function (DUF3275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.6   4.3e-05     0.048      60     159 ..      14     118 ..       8     130 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.3e-05
   PF11679.3  60 YiagGklvveiRarlddlqLddvdklsrdeaeelepqevDPldespela..aqaa.v...asaplpsPspaskkeaserlskdlrerlapvgkeasaPakeaaeas 159
                      +++ ++ a   ++ Ld+++++s d+ ee++++ ++P   + ++   ++ + v   a   +++ +p++  eas+++sk+ +e+++p + ea a   +a+ ++
  MMETSP0890-20130614|3725_1  14 MRMAAQAMKDMDADTISMMLDQIENMSPDQLEEMKKAGMNPTMLKTSMRllKSNPgVlemAKKQMEKLTPEQMAEASKAASKQ-LENMSPAQLEAMANSAQATISN 118
                 5556677888999999************************976666543113332121112334456789999999****998.8999999999977666665444 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00017      0.19      27      61 ..      80     114 ..      70     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   PF09011.5  27 pqvpvglaevsklcsekWkalseeeKekYeekAke 61 
                 +  p ++ae+sk++s++  ++s ++ e+ ++ A++
  MMETSP0890-20130614|3725_1  80 KLTPEQMAEASKAASKQLENMSPAQLEAMANSAQA 114
                 334558*********************99999986 PP

>> PF01927.11  Protein of unknown function DUF82
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.16      67     123 ..      37      92 ..      15      98 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00014
  PF01927.11  67 srdveeqlaeliarlglklelkpelsrCvkCngeleevskeevkervpekvyeeade 123
                 ++   +ql+e+ +++g++ ++ ++  r +k+n  + e+ k+++++  pe+++e +++
  MMETSP0890-20130614|3725_1  37 ENMSPDQLEEM-KKAGMNPTMLKTSMRLLKSNPGVLEMAKKQMEKLTPEQMAEASKA 92 
                 44456888888.*******************************99999999988765 PP

>> PF10145.4  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   6.5   3.8e-05     0.043     133     199 ..      23      92 ..       8      97 .. 0.85
   2 ?    2.1   1.8       0.1   1.2e+02      55      92 ..      86     121 ..      85     127 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-05
   PF10145.4 133 seAgtalknflsrltkpskeaakalkklGlsfkd...akgkgksleeileelqkklkdltdaqkaaalka 199
                 ++ ++ ++ +l +++++s+++ + +kk+G++++    ++  +ks +++le  +k++++lt++q a+a ka
  MMETSP0890-20130614|3725_1  23 DMDADTISMMLDQIENMSPDQLEEMKKAGMNPTMlktSMRLLKSNPGVLEMAKKQMEKLTPEQMAEASKA 92 
                 4445678999********************99888899999**********************9877665 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.1
   PF10145.4  55 laeaaeiaatalnafgldakdaeqaadalayaanngat 92 
                 +aea+++a++ l++  ++++++e +a+ ++++  n +t
  MMETSP0890-20130614|3725_1  86 MAEASKAASKQLEN--MSPAQLEAMANSAQATISNNNT 121
                 57777777777777..5667788888888877777666 PP

>> PF04216.7  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.9    0.0017       1.9      51     134 ..      26     114 ..      14     130 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0017
   PF04216.7  51 qklleel.papapldaervesalaegvpplaasa....lerdpawrelleaLlaalaaaalpeaaaaaldelekadeaelealadalla 134
                 ++ ++++ ++ ++++  + e+ ++ g+ p   ++    l+++p + e+ ++ +++l+++++ ea +aa ++le++++a+lea+a++  a
  MMETSP0890-20130614|3725_1  26 ADTISMMlDQIENMSPDQLEEMKKAGMNPTMLKTsmrlLKSNPGVLEMAKKQMEKLTPEQMAEASKAASKQLENMSPAQLEAMANSAQA 114
                 4554444444444444444444445554433322111134444455556777888888887777777****************998776 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0029       3.4       4      33 ..       9      39 ..       8      49 .. 0.86
   2 ?    4.3   1.2     0.031        35       3      31 ..      80     109 ..      78     118 .. 0.69
   3 ?    2.4   0.1      0.12   1.4e+02       4      21 ..     100     117 ..      99     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0029
   PF06013.7  4 vdpeelrqaakrfqk.aaeelesilqrlkaq 33
                ++pe++r aa+++++  a++++ +l++++++
  MMETSP0890-20130614|3725_1  9 MSPEQMRMAAQAMKDmDADTISMMLDQIENM 39
                68***********974689999999999986 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.031
   PF06013.7   3 kvdpeelrqaakrfqkaaeele.silqrlk 31 
                 k +pe++++a+k+++k+ e+++ ++l++++
  MMETSP0890-20130614|3725_1  80 KLTPEQMAEASKAASKQLENMSpAQLEAMA 109
                 578999999999999988876633444444 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.12
   PF06013.7   4 vdpeelrqaakrfqkaae 21 
                 ++p++l+++a+++q++ +
  MMETSP0890-20130614|3725_1 100 MSPAQLEAMANSAQATIS 117
                 789999999999998765 PP

>> PF02432.10  Fimbrial, major and minor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.6    0.0045       5.1     145     215 ..      49     121 ..       2     133 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0045
  PF02432.10 145 paamsglsgksavnsvskvegls..qlklvnkefpswlqtakngsvsensklsdgnvtsvegaYasgisagqt 215
                 +a+m+    k+ +   ++ +g++  + k+++k  p+++++a++++ ++++++s +++ ++++   + is+++t
  MMETSP0890-20130614|3725_1  49 KAGMNPTMLKTSMRLLKSNPGVLemAKKQMEKLTPEQMAEASKAASKQLENMSPAQLEAMANSAQATISNNNT 121
                 3444444455555666666666677789********************************9987888888877 PP

>> PF14026.1  Protein of unknown function (DUF4242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.044        50       9      30 ..       6      27 ..       3      37 .. 0.85
   2 ?   -1.2   0.0       1.8   2.1e+03      11      23 ..      38      50 ..      31      55 .. 0.76
   3 ?    4.9   0.3     0.022        25       9      31 ..      78     100 ..      73     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.044
   PF14026.1  9 pggitaeelaaaaakslavlae 30
                pgg+++e+++ aa++ +++ a+
  MMETSP0890-20130614|3725_1  6 PGGMSPEQMRMAAQAMKDMDAD 27
                677************9998876 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.8
   PF14026.1 11 gitaeelaaaaak 23
                ++++++l++++++
  MMETSP0890-20130614|3725_1 38 NMSPDQLEEMKKA 50
                3888999998886 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.022
   PF14026.1   9 pggitaeelaaaaakslavlaee 31 
                 ++++t+e++a+a+++  + l+++
  MMETSP0890-20130614|3725_1  78 MEKLTPEQMAEASKAASKQLENM 100
                 3459***********99999998 PP

>> PF06518.6  Protein of unknown function (DUF1104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.2     0.026        29      37      71 ..      16      50 ..      12      62 .. 0.86
   2 ?    6.8   2.2    0.0059       6.7      32      76 ..      76     116 ..      71     131 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.026
   PF06518.6 37 lkakeakkfkaklkeamrknleklsvedrekfkke 71
                + a+  k++ a+  + m +++e +s  + e++kk+
  MMETSP0890-20130614|3725_1 16 MAAQAMKDMDADTISMMLDQIENMSPDQLEEMKKA 50
                7778889999999999999*********9999986 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0059
   PF06518.6  32 KRlgklkakeakkfkaklkeamrknleklsvedrekfkkevreel 76 
                 K ++kl+ +      a+ ++a+ k+le +s ++ e++ +  ++ +
  MMETSP0890-20130614|3725_1  76 KQMEKLTPE----QMAEASKAASKQLENMSPAQLEAMANSAQATI 116
                 333333332....22333455666666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1211  (0.0885752); expected 273.4 (0.02)
Passed bias filter:                      612  (0.044763); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.94
# Mc/sec: 341.61
//
Query:       MMETSP0890-20130614|3735_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 521.11
//
Query:       MMETSP0890-20130614|3736_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-14   52.3   0.0    4.4e-14   52.1   0.0    1.1  1  PF13306.1 Leucine rich repeats (6 copies)
    2.1e-07   30.4   0.0    2.7e-06   26.9   0.0    1.9  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   6.5e-18   4.4e-14      14      78 ..       1      61 [.       1      63 [] 0.93

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 6.5e-18
   PF13306.1 14 ltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFs 78
                lt++t+p  +t I e aF++c+sl+++tlp+s+t i + aF++c   +++ti   +tsi+e+aF 
  MMETSP0890-20130614|3736_1  1 LTQLTLPAGLTAICEGAFQGCTSLTHVTLPDSITDIRSDAFDGC--PNDLTI--AITSIDEQAFD 61
                799*****************************************..677777..699******97 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.9e-10   2.7e-06       3      50 ..       1      46 [.       1      46 [. 0.95
   2 ?    1.9   0.0     0.024   1.6e+02      33      46 ..      49      61 ..      47      63 .] 0.73

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 3.9e-10
   PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50
                L+ L L    l+ i++gaF+g+++L++  L  ++++ i ++af+g+p+
  MMETSP0890-20130614|3736_1  1 LTQLTLPAG-LTAICEGAFQGCTSLTHVTLP-DSITDIRSDAFDGCPN 46
                677899999.*********************.**************96 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.024
   PF13855.1 33 sgnnlksispeafk 46
                +  +++si+++af+
  MMETSP0890-20130614|3736_1 49 T-IAITSIDEQAFD 61
                5.578899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.35s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 264.86
//
Query:       MMETSP0890-20130614|3727_1  [L=909]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-46  157.5   2.1    4.5e-46  156.6   1.4    1.5  1  PF00122.15 E1-E2 ATPase
    4.9e-21   76.0   0.0      8e-13   49.2   0.0    2.9  2  PF00702.21 haloacid dehalogenase-like hydrolase
    9.9e-14   50.9   0.0    2.5e-13   49.6   0.0    1.7  1  PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
      2e-13   50.1   1.8    4.2e-13   49.0   0.0    2.2  2  PF00689.16 Cation transporting ATPase, C-terminus
    3.8e-10   40.1   0.0    1.1e-09   38.6   0.0    1.8  1  PF12710.2  haloacid dehalogenase-like hydrolase
    1.7e-06   27.2   0.0      4e-06   26.0   0.0    1.6  1  PF00690.21 Cation transporter/ATPase, N-terminus
    2.8e-05   23.7   1.5     0.0012   18.3   0.1    2.9  3  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   1.4   2.3e-49   4.5e-46       4     230 .]      75     351 ..      68     351 .. 0.90

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 2.3e-49
  PF00122.15   4 lavllnalvefvqeykaekalesLkrlspetaatvirdgkeqeipakeLvvGDiviiktGdrvpaDgrlieagslevdesalTGEslpvtksvelaergnkvfsgtvvlsgegkaiVtatgketeigkiarlvqeaksae...........................................tplqkkldrlaklllilvlavailif..iislvt............dvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230
                 +++ l+a +e+ + +  +++  +L++  + +  ++ir g+ +e +  e+vvGD+v+i  Gd +paDg+l+e +++++desalTGE   v+k+     + ++v+sgt v +g+gk  ++a+g ++  g+i   v+ +++                                             ++lq+kl+  a  +++++l va l+f  +++++             ++a++++  +l+a+++lvva+PegLplav l+la+ ++rl+k+++ v++  a+Et
  MMETSP0890-20130614|3727_1  75 FVLNLQAGIEYTKAKEFRRQQLELEG--DAK-FKIIRGGETMETSPTEIVVGDVVRIAVGDIIPADGVLLEGTDIKIDESALTGEPILVAKN----IQEPFVLSGTSVMTGSGKLLIVAVGLNSVQGRILAAVRGTEGGGseendpgtetnentrlttnieqeeeeenkaevnakeveksnagSNLQEKLNDTAMAIGKIGLYVATLAFllMLGVFLgqpkknlnlppvEIANSIISFFLVAVTILVVAVPEGLPLAVVLSLAITMGRLMKDNNRVKHIFACET 351
                 44444444444444444444333333..445.99*************************************99*******************....6************************************9999944579******************************************************************55555555******************************************************************8 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   4.1e-16     8e-13       2     171 ..     356     658 ..     355     676 .. 0.62
   2 !   23.5   0.0   3.1e-08   6.1e-05     154     204 .]     713     789 ..     699     789 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 4.1e-16
                 CEEEEECCTTTBETHHHH.......................................................................HHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHCEECTCCHCCEECEEEE.................EE.......HHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHH............................................HHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC...SEEEEHHH..TT.SHH CS
                 xxxxxxxxxxxxxxxxxx.......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xx.......xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...xxxxxxxx..xx.xxx RF
  PF00702.21   2 ktvvfDktGTLtegepsv.......................................................................lgnkaalalaaaletgsehpigkavvaaakanstrtgfatfigrgvsgkvdg.................av.......gnpewmtalglrviapdlvaaeg........qskgrtvvvla............................................qaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi...dslvfaev..kP.epk 171
                 +t+++DktGTLt++++++                                                                       + + a+l+l  +l +  +  + ++++ a ++             gv+ +  +                 +        g  ++ t++      +++v++++        +                                                      ++ +l+ ++++dp++p +  a+ ++  ag+ v ++tgd   ta ai +q gi     +v +++  kP +pk
  MMETSP0890-20130614|3727_1 356 TTICSDKTGTLTQNRMTImrclvgnsanggtenniteikhdlkdvavqlqeicspqmlelfiqsailnsapttkvswdettknwkyvgnATECALLKLCTQLGAEEPDILRAQFQDADTK----------LDWGVKVFPFSsqrkkmswiiqlkdggyRLfskgapsGILDYTTGILSS--DGKSVKPIDidacqsaiE---------RfqhaamrtlalayrdfaemptnwdeplpgqesvsvetqifaaetELTLLAIVGIEDPLRPTVTRAISQCATAGVdVRMCTGDALATAVAISAQCGIlrpSDMVPSNDpqKPkQPK 658
                 89*************************************************888888888777777777777777777666666666664444444444444333333333333333333..........3333333333333332222222222223112222222222222222222..222222222222333331.........0233333333444455555555555555554444444444444445***************************************************9995577777777774444 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 3.1e-08
                 HHTTC.....SEEEEHHHTTSHHHHHHHHHHHTS.......................-GGGEEEEESSCTTHHHHHHTS CS
                 xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21 154 kqagi.....dslvfaevkPepklfvaaieeLqi.......................dpgevamvGDgvnDapalaaAg 204
                 +qa +     +  v a+  Pe+k  + +++ L                         d++ va++GDg nDapal+aA+
  MMETSP0890-20130614|3727_1 713 NQAAFddiwpKLRVLARCQPEDK--LTLVRGLRRsklfedkdtctqlekrhnihifpDYQVVAVTGDGTNDAPALKAAN 789
                 444435557867799999*****..88888877777799999999999999999999999*****************97 PP

>> PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.3e-16   2.5e-13       9      89 ..     431     519 ..     420     521 .. 0.70

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.3e-16
   PF13246.1   9 eeeeekeneeilGdptEaALlvlaeklgvgkd......veelreeyk.kvaelpFnserKrmsvvhk..ekeylllfvKGAperilerCt 89 
                 + +e+++n +++G++tE+ALl+l+ +lg  +        ++++++ +  v+++pF+s+rK ms +++  +++y+l f KGAp+ il++ t
  MMETSP0890-20130614|3727_1 431 SWDETTKNWKYVGNATECALLKLCTQLGAEEPdilraqFQDADTKLDwGVKVFPFSSQRKKMSWIIQlkDGGYRL-FSKGAPSGILDYTT 519
                 3334444433*****************7755566655533333333224788*************9985666666.**********9876 PP

>> PF00689.16  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.37   7.3e+02      55     153 ..     265     292 ..     252     334 .. 0.53
   2 !   49.0   0.0   2.2e-16   4.2e-13       2      51 ..     860     909 .]     859     909 .] 0.98

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.37
  PF00689.16  55 liqgllqalvtllafflgllgfgisekenklssnfaqtaaFitlvlsqifnalnlrsrkeslfkfsgifsnkllllavllslllqvlivyvpglnavfg 153
                 + +gl++a +++l+++ ++l  g+  k+                                                                      +
  MMETSP0890-20130614|3727_1 265 GKIGLYVATLAFLLMLGVFL--GQPKKNL---------------------------------------------------------------------N 292
                 44555555555555544444..2222222.....................................................................2 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 2.2e-16
  PF00689.16   2 lplsaiqiLwinLvtDslpalaLaleppekdimkrkPrkkkeplfskkml 51 
                 +pl a+q+Lw+n+++Dsl+++aLa epp + +++r P+ k+ ++++++m+
  MMETSP0890-20130614|3727_1 860 SPLAATQMLWVNVIMDSLASIALASEPPTEALLERSPYGKQRRIITRTMW 909
                 8************************************************8 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   5.4e-13   1.1e-09       1     191 []     358     786 ..     358     786 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 5.4e-13
                 EEE------B---.......................HHHHHHHHH--H...HHH.............................................................................................................................................HHHHHHHHHHHHT-HHHH----HHHHHHHHHH........................................H--BHHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-----........................................................................HH----HHHHHHHHHSHHHHHH......................HH---TT----S--EE---GGGHHHHH CS
   PF12710.2   1 avFDkDGTLteddtdflryllk..............lldvlgealakdaslaslkdst.....................................................................................................................................cltlsdpkdllellaeyggirviglaarylealake.ieea................................klfegfipdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlateledeg........................................................................ggkvdgritgkldgKaraverl......................vvlaykqvggrivvaiGDsanDlpalk 191
                 +++Dk+GTLt++ +  +r+l++              +              + lkd +                                                                                                                                      +++s  +++++       +++++la +y++ +a++ +++                                 +l++ +     +++++   ag +v +++gd+  +a ++ +++gi+  + +   +   +                                                                        + +v +r+ ++ d K+ +v+ l                      +       +++ v++ GD++nD palk
  MMETSP0890-20130614|3727_1 358 ICSDKTGTLTQNRMTIMRCLVGnsanggtenniteiK--------------HDLKDVAvqlqeicspqmlelfiqsailnsapttkvswdettknwkyvgnatecallklctqlgaeepdilraqfqdadtkldwgvkvfpfssqrkkmswiiqlkdggyrlfskgapsgildyttgilssdgksvkpidiDACQSAIERFQH-------AAMRTLALAYRD-FAEMpTNWDeplpgqesvsvetqifaaeteltllaivgiedPLRPTVT----RAISQCATAGVDVRMCTGDALATAVAISAQCGILRPSDMVPSN---DpqkpkqpkpffamegaefdervhvidteeskvmrrcfdydtgkigemlrhpfkrdadgekiinqaafddiwpKLRVLARCQPE-D-KLTLVRGLrrsklfedkdtctqlekrhnihI-----FPDYQVVAVTGDGTNDAPALK 786
                 7************999999999987555444222221..............2222222555556677788888888999999999999****************************************************************************************999988876555544333333333333.......444666666666.555556666789*********************999999999999999....***776666**********999999999999*99877333333...2456889********************************************************887777766633334444444.4.7777777777777777777777776554321.....2446779************97 PP

>> PF00690.21  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     2e-09     4e-06      27      66 ..       5      44 ..       2      46 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2e-09
  PF00690.21 27 aerlkkyGpNelpepkkksllrlflrqfkdplvilLlvaa 66
                aer++++G+N +++p+ +s++ l+l+ + d+++  Llv+a
  MMETSP0890-20130614|3727_1  5 AERREQFGKNYVEPPPLRSYWSLILEGLEDITIRALLVCA 44
                89************************************99 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.055   1.1e+02     167     199 ..     226     258 ..     212     267 .. 0.79
   2 ?   -0.1   0.0      0.26   5.1e+02      19      54 ..     604     639 ..     598     649 .. 0.83
   3 !   18.3   0.1   6.1e-07    0.0012     204     247 ..     771     815 ..     756     822 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.055
                 TCEEEEEETTEEEEEE----HHHHHHHHHHHTT CS
   PF08282.7 167 lititsssegsleiipkgvsKgtalkklakaln 199
                  i+  + +e+  e+++k+v K +a ++l+++ln
  MMETSP0890-20130614|3727_1 226 NIEQEEEEENKAEVNAKEVEKSNAGSNLQEKLN 258
                 446667889999*****************9987 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHTT-EEEEEESS-HHHHHCCHCHTTC CS
   PF08282.7  19 etkeaikklqekgikvviaTGRslsevlplleelgl 54 
                    +ai ++  +g+ v  +TG  l ++  + ++ g+
  MMETSP0890-20130614|3727_1 604 TVTRAISQCATAGVDVRMCTGDALATAVAISAQCGI 639
                 5679*****************999988888777765 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 6.1e-07
                 GEEEE----TTHHHHHH-TEEEE-T.TS-HHHHHH-SEE---GGG CS
   PF08282.7 204 eviafGDgeNDieMLelaglgvAmg.naspevkaaAdyvtdsnne 247
                  v++ GDg ND + L++a++g+Amg  +++ +k+a+d +  + n 
  MMETSP0890-20130614|3727_1 771 VVAVTGDGTNDAPALKAANVGFAMGlVGTDIAKQACDIILLDDNF 815
                 57889********************5599********99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.43u 0.40s 00:00:01.83 Elapsed: 00:00:00.96
# Mc/sec: 2269.05
//
Query:       MMETSP0890-20130614|3733_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-16   59.7   1.4    4.7e-16   58.1   0.1    2.4  2  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.11   1.5e+03      39      51 ..      24      36 ..      16      45 .. 0.74
   2 !   58.1   0.1   3.4e-20   4.7e-16       1      61 [.      81     141 ..      81     143 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHH CS
  PF00226.26 39 eaeekfkeineAy 51
                  +++fke+ne  
  MMETSP0890-20130614|3733_1 24 SVDDFFKELNETQ 36
                47899***99865 PP

  == domain 2    score: 58.1 bits;  conditional E-value: 3.4e-20
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekra 61 
                 ++Y +L++++da+ ++Ik +Yr+l+ ++HPDkn  d+ +a  +f+ i++Ay+ L dp+ r 
  MMETSP0890-20130614|3733_1  81 NPYLVLQLDTDATIDDIKMRYRRLSALCHPDKNLADGNRARCAFEAIKTAYQQLNDPKLRD 141
                 79***********************************99******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1425  (0.104228); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.73
# Mc/sec: 929.00
//
Query:       MMETSP0890-20130614|3740_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-66  218.4   5.3    2.3e-25   87.9   0.0    3.0  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   1.7e-29   2.3e-25       3      95 ..      16     114 ..      14     115 .. 0.95
   2 !   65.5   0.1   1.7e-22   2.3e-18       5      88 ..     124     208 ..     121     212 .. 0.94
   3 !   66.5   0.1   8.4e-23   1.2e-18       3      94 ..     221     313 .]     219     313 .] 0.92

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 1.7e-29
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH......-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlq......ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllskk 95 
                  ++l ++laG+++gaia+++t+P+++vK  +q      k  +++  +y+gi++++ ++  e+Gi++++rG+l+n+lr++p++a++f++ +++k ++ k+
  MMETSP0890-20130614|3740_1  16 GNFLIDFLAGGVSGAIAKTCTAPIERVKLIIQtqdanpKIISGEVPRYTGIINCFTRVAAEQGILAFWRGNLVNVLRYFPTQAFNFAFKDSIKAMFPKY 114
                 68999****************************999988888999***************************************************997 PP

  == domain 2    score: 65.5 bits;  conditional E-value: 1.7e-22
                 HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHH.HH---GGGG---HHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiy.keeGirglyrGllpnllrvvpaaaikfvtyetl 88 
                 ++ ++++G++Aga + ++++Pld ++trl ++  s++ +++g+ld+lkk+     Gi+gly G+++++++++p ++ +f++ +tl
  MMETSP0890-20130614|3740_1 124 FAVNMASGGLAGAGSLCIVYPLDYARTRLASDVGSGKAQFSGLLDCLKKTAaGPAGILGLYNGFGVSVVGIIPFRGTYFGVNDTL 208
                 67899********************************************995679**************************9987 PP

  == domain 3    score: 66.5 bits;  conditional E-value: 8.4e-23
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH..-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlq..ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                 l+++ +++++ +A++ aa + +P+d+v+ rlq  ++ ++++ +ykg++d+++ki+ +eG+ +l++G ++n lr+ + +a+ +v+y  +k +lsk
  MMETSP0890-20130614|3740_1 221 LGLASKFACAQTAALSAAYASYPFDTVRRRLQmqSELPKEKWNYKGVMDCFGKIIAKEGFGALFKGAGANALRT-VGSALVLVMYGEIKAFLSK 313
                 677889**************************988899999*******************************95.57778899******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.88
# Mc/sec: 852.34
//
Query:       MMETSP0890-20130614|3751_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   17.7   0.0      0.004   17.2   0.0    1.3  1  PF00169.24 PH domain
  ------ inclusion threshold ------
      0.024   13.7   0.0      0.029   13.4   0.0    1.1  1  PF04185.9  Phosphoesterase family
       0.12   12.4   0.0       0.16   12.0   0.0    1.2  1  PF13350.1  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.8e-07     0.004       4     102 ..       3     101 ..       1     103 [. 0.88

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.8e-07
                 EEEEEEEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSC..TTSSSSEEEEEETTT....CEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24   4 eGyllkksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfal..qkesnnyfeitfkdv....esyllsaeseeerkrWvqalknl 102
                 +G++++k +   +w +r++     +L+ ++       ++  ++  +n+++++k+++ k  l   ++ +  f+i+ +++      y++ ae++  ++ Wvq l+++
  MMETSP0890-20130614|3751_1   3 AGWVKRKVKNSDKWVRRWLEISKYVLYSYQACP----AEVPQARVMNTLDLRKTKEIK--LqpDESMPGLFVIVPETSddshPGYVMRAENDAMAQVWVQGLRKA 101
                 7*******************************8....677777778888999999887..44466778889999999999999*******************987 PP

>> PF04185.9  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.4e-06     0.029     211     301 ..      23     109 ..      10     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.4e-06
   PF04185.9 211 fnqevqaskqelnarsakkrklkevsalhqydlskfkkdvkngkLPqvsfikpngandeHpgysviaagdklikevlealtaspqwnktll 301
                 + ++v +s+q+  a+ +++r  +  +  +++++ k++ d   +++P + +i+p++ +d Hpgy   a+ d++ +  ++ l++  + +  +l
  MMETSP0890-20130614|3751_1  23 ISKYVLYSYQACPAEVPQARVMNTLDLRKTKEI-KLQPD---ESMPGLFVIVPETSDDSHPGYVMRAENDAMAQVWVQGLRKAREDELAAL 109
                 556777888888888888888888888888887.77777...9*********************988888888888888888776655555 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.5e-05      0.16      40      80 ..      40      86 ..      31     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.5e-05
   PF13350.1 40 elgirtvvDLRseeEvekepdklpegvkyvnlpvlkeeae......s 80
                + ++ + +DLR+++E++ +pd+ ++g+ ++  +  ++++       +
  MMETSP0890-20130614|3751_1 40 QARVMNTLDLRKTKEIKLQPDESMPGLFVIVPETSDDSHPgyvmraE 86
                7789999******************9988887777777664444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:01.02
# Mc/sec: 357.10
//
Query:       MMETSP0890-20130614|3759_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.93
# Mc/sec: 195.83
//
Query:       MMETSP0890-20130614|3761_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-58  195.5   0.8    8.2e-58  195.3   0.6    1.1  1  PF13714.1  Phosphoenolpyruvate phosphomutase
    9.2e-20   70.2   0.2    4.3e-19   68.0   0.3    1.8  2  PF00463.16 Isocitrate lyase family
    5.3e-05   22.3   0.5      8e-05   21.7   0.3    1.2  1  PF02548.10 Ketopantoate hydroxymethyltransferase
  ------ inclusion threshold ------
      0.045   13.7   0.2        1.3    9.1   0.0    2.3  2  PF00125.19 Core histone H2A/H2B/H3/H4
      0.071   11.3   0.0       0.12   10.6   0.0    1.3  1  PF00274.14 Fructose-bisphosphate aldolase class-I


Domain annotation for each model (and alignments):
>> PF13714.1  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   0.6     3e-61   8.2e-58       1     237 [.      39     285 ..      39     286 .. 0.93

  Alignments for each domain:
  == domain 1    score: 195.3 bits;  conditional E-value: 3e-61
   PF13714.1   1 lra.lhakgeplvlpnawDalsariveeagfkalatsSlavaasl.GvpDgelltleelleavrriaevvdlPlivDledGygespedvaetvkrliaaGavGvniEDk....kdn.raerqllsieefaekiaaaraaakeagfvinARtdalllagagleeaieRaraYaeAGAdgvfvpglkkeediaalvaav.svplnvvp.l.pgt..lsveelaelG..varisvgnhllraalaalreaakei 237
                 lra l+++ ++++lp ++D++sa+++e+agf+++ ts+++++asl G+pD++l+t++e++e++ ria +v++P+i+D+++Gyg    +v + v+++++  ++++ +ED+    k++ +++++ ++++e+a+ki+aa+aa+ ++g+vi+ARtda  ++  gl+ aieRar Y  AGAd+vfv  +++ee+++ +++a+ +vpl +     ++t   s++ l ++G  ++  ++ ++++ aa++al++  +++
  MMETSP0890-20130614|3761_1  39 LRAlLKEE-KVMLLPGVYDCVSAKLCEQAGFEVIYTSGFSISASLlGMPDIGLMTATENIETIGRIAGSVSMPVIADCDTGYGG-RSNVVRVVREMVQRQVAAIALEDQewpkKCGhFEGKKVIPMQEHAGKIRAAVAARGDSGLVIVARTDA--RQVLGLDAAIERAREYYRAGADVVFVEAMQSEEEMRLVSQALpGVPLLCNYiEgGKTpaKSAKALLDIGknYSFLMFSTAAMLAATKALQDLYAHL 285
                 78955555.9**********************************99*************************************9.89**********************999777755999999*****************************..589***************************************8899877774434457799********99999999************9988876 PP

>> PF00463.16  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.12   3.3e+02      41      91 ..      34      81 ..      24      87 .. 0.71
   2 !   68.0   0.3   1.6e-22   4.3e-19     150     254 ..     109     210 ..      91     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.12
  PF00463.16 41 eqakklfkllekeekkktvsstfgaldpvqvtqmakyldtvyvsGWqssst 91
                 +a+kl  ll++e k   +  ++ ++ +   +q  + ++ +y sG+ +s++
  MMETSP0890-20130614|3761_1 34 PKARKLRALLKEE-KVMLLPGVYDCVSAKLCEQ--AGFEVIYTSGFSISAS 81
                5677877777654.4455666677777666666..57999*****999875 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 1.6e-22
  PF00463.16 150 rPivadadtGfGGltavlkltklfierGaagihiedqasgtkkcGhmaGkvlvpiqehinrlvairlaadilgsdlllvartdaeaatlitstidtrdhefivGa 254
                  P++ad+dtG+GG  +v+++++ +++r  a+i +edq    kkcGh  Gk ++p+qeh  ++ a+ +a    +s l++vartda     + + i+   +++ +Ga
  MMETSP0890-20130614|3761_1 109 MPVIADCDTGYGGRSNVVRVVREMVQRQVAAIALEDQE-WPKKCGHFEGKKVIPMQEHAGKIRAAVAAR--GDSGLVIVARTDARQVLGLDAAIERAREYYRAGA 210
                 6************************************7.579*****************9987665443..46899********988777777777777766665 PP

>> PF02548.10  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.3   2.9e-08     8e-05       6     187 ..      37     221 ..      32     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.9e-08
  PF02548.10   6 kdlkkkkkegekivmltaydastaklvdeagvdvilV.GdslgmvvlgeestlpvtleemiyhtkaVargakralvvadlPfgsyeaseeqalknaarllkeagadavkleggeelaetvkalveagipVmgHiGLtPqsvnalG..gy....kvqGrkeeeaeklledakaleeaGafaivlEcvpee 187
                 ++l+++ ke++ + +   yd  +akl+++ag +vi   G s++  +lg+++   +t  e i  +  +a g+ +  v+ad   g      ++ ++   ++++ ++++a+ le  e+  +  ++  ++ ip   H G +  +v a G  g     ++ +r+    ++ +e+a++  +aGa ++ +E++++e
  MMETSP0890-20130614|3761_1  37 RKLRALLKEEKVMLLPGVYDCVSAKLCEQAGFEVIYTsGFSISASLLGMPDIGLMTATENIETIGRIA-GSVSMPVIADCDTGYG--GRSNVVRVVREMVQ-RQVAAIALEDQEWPKKCGHFEGKKVIPMQEHAGKIRAAVAARGdsGLvivaRTDARQVLGLDAAIERAREYYRAGADVVFVEAMQSE 221
                 567777775555566679****************975499*********************9999987.6677889999987755..77889999999999.*********999999999999***************99999883344222244444555567899*****************99876 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.073     2e+02      11      24 ..     125     138 ..     120     144 .. 0.82
   2 ?    9.1   0.0   0.00047       1.3      22      50 ..     260     288 ..     254     293 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.073
  PF00125.19  11 vsRvvrelkegfya 24 
                 v Rvvre+++++ a
  MMETSP0890-20130614|3761_1 125 VVRVVREMVQRQVA 138
                 88*******99766 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00047
  PF00125.19  22 fyaelrisaealvalqealedlleeiled 50 
                 +y+ l++s +a++a ++al dl +++le 
  MMETSP0890-20130614|3761_1 260 NYSFLMFSTAAMLAATKALQDLYAHLLEH 288
                 56779**********************96 PP

>> PF00274.14  Fructose-bisphosphate aldolase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.2e-05      0.12      93     129 ..     176     211 ..     153     223 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.2e-05
  PF00274.14  93 KvDkglvplagtagetttqglDglaeRaaeykkaGar 129
                 + D glv +a t+    + glD+  eRa+ey++aGa+
  MMETSP0890-20130614|3761_1 176 RGDSGLVIVARTD-ARQVLGLDAAIERAREYYRAGAD 211
                 5689999999998.677789***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.69
# Mc/sec: 1146.08
//
Query:       MMETSP0890-20130614|3760_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-51  174.3   0.1    1.7e-51  174.0   0.0    1.1  1  PF00227.21 Proteasome subunit
    1.7e-13   49.4   0.2    3.1e-13   48.6   0.2    1.4  1  PF10584.4  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
      0.087   12.8   0.0       0.25   11.4   0.0    1.8  1  PF07499.8  RuvA, C-terminal domain
       0.11   12.2   0.1        0.2   11.4   0.0    1.3  1  PF00825.13 Ribonuclease P


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.0   5.1e-55   1.7e-51       1     179 [.      38     212 ..      38     224 .. 0.94

  Alignments for each domain:
  == domain 1    score: 174.0 bits;  conditional E-value: 5.1e-55
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHH..STTCSHHHHHHHHHHHHHHHHHHBT CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktllekly..kedltleeavelavkalkealerdk 179
                 vk+G++++G+ g+++v+laa kr +  + l s+++ +K+ kiddhi++a+aGl aDartl++++r  + ++++ +g p++  rlv+ +a++ q+ tq + rrp+gv+ll+a +d +g p+ly+++p+G+++e+ +a+aiG +s++akt+le+++  +++l+l+e++++a+kal   + +dk
  MMETSP0890-20130614|3760_1  38 VKQGSASLGLVGSKHVILAALKRQP--NEL-SSHQ-KKLLKIDDHIVVAVAGLNADARTLAKQMRTSCLNHKYVFGAPLQAARLVTDIADKYQRCTQMYVRRPYGVGLLVAAYDATG-PHLYETCPTGAFFEY-HAMAIGARSQSAKTYLESHFqsFPNLSLDELIKHALKALAGCVAGDK 212
                 79***********************..999.9997.******************************************************************************888.***************.8**************************************98776654 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2     9e-17   3.1e-13       1      23 []      15      37 ..      15      37 .. 0.99

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 9e-17
                T---TT--------HHHHHHHHH CS
   PF10584.4  1 YDrslTtFSPdGRLfQVEYAlkA 23
                YD+++T+FSP+GRL+QVEYA++A
  MMETSP0890-20130614|3760_1 15 YDQDVTVFSPQGRLLQVEYAQEA 37
                **********************9 PP

>> PF07499.8  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.4e-05      0.25      30      46 ..     188     204 ..     181     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-05
   PF07499.8  30 dpgasveelIRaALklL 46 
                  p++s++elI+ ALk+L
  MMETSP0890-20130614|3760_1 188 FPNLSLDELIKHALKAL 204
                 699************99 PP

>> PF00825.13  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.8e-05       0.2       7     106 ..       5     100 ..       2     105 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.8e-05
  PF00825.13   7 LkkrkeFqrvfrkgrrfrsrhfvly...alknskeapearlGlvvskkvgkrAvkRNriKRllReafrlnqdelpagldlvvvarksaaeasfaelekelekl 106
                 L +rk F++v+ +   + s +  l+   +++++ ++ +a lGlv sk v+      + +KR+  e+  ++++ l+   d +vva  +  +a+  +l+k++++ 
  MMETSP0890-20130614|3760_1   5 LIERKMFRSVYDQDVTVFSPQGRLLqveYAQEAVKQGSASLGLVGSKHVIL-----AALKRQPNELSSHQKKLLK-IDDHIVVAVAG-LNADARTLAKQMRTS 100
                 678999*******99999977655522255544444449************.....6789999999999999988.55555555555.577888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 941.90
//
Query:       MMETSP0890-20130614|3775_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-16   58.7   2.4      2e-10   39.9   0.2    2.0  2  PF00400.27 WD domain, G-beta repeat
     0.0072   15.8   0.0       0.91    9.1   0.0    2.2  2  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.025   13.7   0.1       0.55    9.4   0.0    2.2  2  PF10584.4  Proteasome subunit A N-terminal signature
      0.035   12.1   0.0      0.035   12.1   0.0    1.1  1  PF11715.3  Nucleoporin Nup120/160
      0.038   13.5   0.1      0.044   13.3   0.0    1.0  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   7.5e-14     2e-10       5      39 .]       7      41 ..       4      41 .. 0.95
   2 !   19.3   0.1   2.5e-07   0.00069       2      29 ..      46      73 .]      45      73 .] 0.91

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 7.5e-14
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l gH + ++++a+spdg  l+s+S D+t+rlW+
  MMETSP0890-20130614|3775_1  7 RELVGHGFVINSIAYSPDGITLVSASFDHTCRLWN 41
                6799******************************7 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.5e-07
                EEEEEEESSSSSEEEEEEESSSTEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasg 29
                + ++++ g t+++ cv fspdg+ +a++
  MMETSP0890-20130614|3775_1 46 TELRIFWGATATIICVVFSPDGHTFATS 73
                678999999*****************96 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00033      0.91      13      24 ..      18      29 ..      12      40 .. 0.86
   2 !    5.0   0.0    0.0062        17      12      21 ..      59      68 ..      42      71 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00033
                EEEE-----EEE CS
   PF07676.7 13 ePawSPDGkkiv 24
                ++a+SPDG ++v
  MMETSP0890-20130614|3775_1 18 SIAYSPDGITLV 29
                689*******98 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0062
                EEEEE----- CS
   PF07676.7 12 gePawSPDGk 21
                 + ++SPDG 
  MMETSP0890-20130614|3775_1 59 ICVVFSPDGH 68
                6678*****5 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.04   1.1e+02       8      12 ..      21      25 ..      19      25 .. 0.93
   2 ?    9.4   0.0    0.0002      0.55       6      13 ..      61      68 ..      60      70 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.04
                ----- CS
   PF10584.4  8 FSPdG 12
                +SPdG
  MMETSP0890-20130614|3775_1 21 YSPDG 25
                8***9 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0002
                T------- CS
   PF10584.4  6 TtFSPdGR 13
                 +FSPdG+
  MMETSP0890-20130614|3775_1 61 VVFSPDGH 68
                69*****8 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05     0.035     232     255 ..      27      49 ..       9      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
   PF11715.3 232 tfvftlsrDgkLRvWnletgqclr 255
                 t +++ s D++ R+Wn+++g+ lr
  MMETSP0890-20130614|3775_1  27 T-LVSASFDHTCRLWNVTNGTELR 49 
                 4.5599**************9966 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.6e-05     0.044     104     161 ..      17      73 .]      12      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
   PF08662.6 104 NtifwspqgrlvllaGfgnlaGeleiydvkklkkiakaeasnatl..vewspdgryvlTa 161
                 N+i +sp g  ++ a f  +     +++v + +++  +  + at   v +spdg+ ++T+
  MMETSP0890-20130614|3775_1  17 NSIAYSPDGITLVSASFDHT---CRLWNVTNGTELRIFWGATATIicVVFSPDGHTFATS 73 
                 9****************998...99*****9999999988888762258********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 273.33
//
Query:       MMETSP0890-20130614|3787_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.2   0.4    1.8e-08   33.8   0.2    1.2  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.019   13.0   0.3      0.021   12.8   0.2    1.4  1  PF11715.3  Nucleoporin Nup120/160
      0.081   11.0   0.0      0.081   11.0   0.0    1.0  1  PF02239.11 Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.2     4e-12   1.8e-08       2      39 .]      21      58 ..      20      58 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 4e-12
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                  ++tl++H + V+ v +s dg+++a++S D+t rlW+
  MMETSP0890-20130614|3787_1 21 SNLQTLDAHWACVNFVVYSSDGSMVATASFDHTARLWN 58
                5689*********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   4.7e-06     0.021     229     250 ..      40      61 ..       1      62 [] 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.7e-06
   PF11715.3 229 egqtfvftlsrDgkLRvWnlet 250
                 ++ ++v+t s D++ R+Wn +t
  MMETSP0890-20130614|3787_1  40 SDGSMVATASFDHTARLWNADT 61 
                 57789***************99 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.8e-05     0.081      11      58 ..       5      52 ..       1      61 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.8e-05
                EBTT---EEEE-----SEEEEE-------EEEE---.--EEEEE---S CS
  PF02239.11 11 verdagkvalidgdskeilavlesgyalHisrvfasdgRyvyvigRDg 58
                v  d+gk+ + d+++ ++l++l++++a    +v++sdg  v +++ D 
  MMETSP0890-20130614|3787_1  5 VVTDTGKLLIYDSATGSNLQTLDAHWACVNFVVYSSDGSMVATASFDH 52
                44699**********************************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 221.75
//
Query:       MMETSP0890-20130614|3779_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-06   25.5   1.3    1.2e-05   24.9   0.1    1.8  2  PF02190.11 ATP-dependent protease La (LON) domain
  ------ inclusion threshold ------
      0.019   14.4   0.1      0.033   13.7   0.0    1.3  1  PF10838.3  Protein of unknown function (DUF2677)


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   1.8e-09   1.2e-05       1     200 [.     125     360 ..     125     362 .. 0.70
   2 ?   -1.4   0.1       0.2   1.3e+03     178     203 ..     481     506 ..     439     508 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.8e-09
  PF02190.11   1 elpllplrnkvLfPgiilplnvsepksialierll...........drdkpyvglfll................k.............sqkddidepsiselysvGtvarIvqilklddgrykivvegle.Rvkikelkekekeepylvarverieddepedseslk.kelkalvkeiiekikk........arenlklllelelllkykdlknpgrLadlvaai..lpfsneekqelLeeldveeRlkkll 200
                 elpl++l + +L+P  +  + v++++  +l ++ l                                       +              +++d   ++ + ++++G+v   + +   +dg   +   ++  Rvki+++ +  + + y++++v + ++ +++  + l+ + + + +++ +++ik+        + + l+++   +l+   ++ + + +L + + a+  + + ++  q +L+eld  ++l+k l
  MMETSP0890-20130614|3779_1 125 ELPLIVL-DAPLLPAGSHSIAVTDKRLEQLYDEILmsggrrfvatvG----------KntdgvisnqplpvveaDdeqhffannkispYDNND---ATLPTVAQMGCVLYLTDVSDGPDGVRVCEHSVQPvRVKIQQVLKRLDGRLYCRVNVVLDQE-DDTTPKALEeEIYVRKCENSVTEIKHilaglganFMQTLQEW-GVILSWFNHNNRRKKNLKNTISANqeTKILPRHEQLVLDELDSIAQLQKEL 360
                 79*****.79*************************554444444440..........344444443444443441445555555554433333...799999************9999*987777778879****9996554444445555544433.333333333245566677788888889999999999999999.577777777777788888888655366688899999999999999999877 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.2
  PF02190.11 178 fsneekqelLeeldveeRlkkllell 203
                 +  +  q lL++++ ++R++  l+ll
  MMETSP0890-20130614|3779_1 481 LQHKAAQTLLDADSHSARCAAFLNLL 506
                 55677899999999999999998887 PP

>> PF10838.3  Protein of unknown function (DUF2677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.8e-06     0.033       4      81 ..     221     295 ..     218     324 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.8e-06
   PF10838.3   4 lvlvvaGvdtayiCsp..dkgrvkvkCaLskLdtrLyWelndsetrvlvfdfedeeegdelyrvevrhslssvseyvvsL 81 
                 l+ v  G d++ +C    ++ rvk++ +L++Ld rLy  +n         + +d ++      + vr++  sv e + +L
  MMETSP0890-20130614|3779_1 221 LTDVSDGPDGVRVCEHsvQPVRVKIQQVLKRLDGRLYCRVNVV-----LDQEDDTTPKALEEEIYVRKCENSVTEIKHIL 295
                 56788999******76225667888899*********988732.....23335555666667899999999988877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:01.04
# Mc/sec: 1299.56
//
Query:       MMETSP0890-20130614|3792_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-07   29.4   0.0    8.5e-05   22.4   0.0    2.5  1  PF05050.7 Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.026   13.8   0.3      0.062   12.5   0.2    1.6  1  PF06553.7 BNIP3
       0.16    9.8   1.0       0.23    9.3   0.7    1.1  1  PF02724.9 CDC45-like protein


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.9e-08   8.5e-05       1     150 [.      58     188 ..      58     204 .. 0.59

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.9e-08
   PF05050.7   1 DvGAniG....wssalyslaakcggggrviafEPnpnnlaklaanltlalgdddgl.velivaavgdgsallsavgdssgsssssvledrntstievpvvtLDdfleenisrid....llKiDvEGaElevLegaeetl.krcqpnii.vEvhefkdfik.............p 150
                 DvGA +G    +s+al     + g++++ + +E++++++a+l+a      +   ++  ++ + a+                           ++++ +  +L ++le+n  +id    ll iDv Ga++  +   + tl   ++p +  vE++++++                 
  MMETSP0890-20130614|3792_1  58 DVGAWDGkhlsNSHALL----VEGKNWNGLLIEADRERYASLQAL-----H---EPlGNITIQAL----V----------------------TCESKSSYSLPSILEKN--NIDicfdLLSIDVDGADYWLF---QATLeAGYRPQVAiVEFNPTMPHDLifiqdrddairhgS 188
                 78888885432222222....333344444488888887777555.....3...11112222222....2......................28999999*****7766..55555559*************...55887889999977**98854222234555555554444 PP

>> PF06553.7  BNIP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.4e-05     0.062     135     193 ..     342     400 ..     289     403 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
   PF06553.7 135 iPPkefkfkhpkrsvslsirktevmkkgglfsaevlkvllpslllshllalGlGiyigk 193
                  PP++   ++ krs++ + r+ +  k+++++s        +  + s  lalG+Gi+i +
  MMETSP0890-20130614|3792_1 342 DPPRTPTKRASKRSSKQRARRRRHAKNNSMMSFLHRNYTTILPITSITLALGIGIAIRR 400
                 499999999*********************995444444444578999********987 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.7   4.9e-05      0.23     142     210 ..     311     380 ..     271     392 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 4.9e-05
   PF02724.9 142 eddeeeeessasekrksesdedeeddddeededeeqrkrsne.sslakslrrrrrrereekeevlekyYa 210
                 +dd e+++ssas k+++   +++e  ++++ + ++++ ++ + +s+++++rrrr ++ ++  + l + Y+
  MMETSP0890-20130614|3792_1 311 DDDFEDSSSSASFKEQQPAIQQQEPTNKNKIDPPRTPTKRASkRSSKQRARRRRHAKNNSMMSFLHRNYT 380
                 2333333333333333344444444444455555555444440344555666666666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       772  (0.0564658); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.75
# Mc/sec: 1290.84
//
Query:       MMETSP0890-20130614|3795_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.4  18.6     0.0024   17.0   6.4    2.0  2  PF12072.3  Domain of unknown function (DUF3552)
  ------ inclusion threshold ------
        6.4    6.6  18.9        1.9    8.3   4.4    2.7  3  PF13863.1  Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   2.5    0.0014       9.3      93     132 ..       2      41 ..       1      49 [. 0.80
   2 !   17.0   6.4   3.5e-07    0.0024      75     123 ..      47      95 ..      40      97 .] 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0014
   PF12072.3  93 tLdrkeeslekkeekleekekelkqkeqsleekeeeveel 132
                 +L r+e+++  +e++l + + + ++  ++le+ e+e++e 
  MMETSP0890-20130614|3795_1   2 NLTRREKDITTREADLLAAQLQSNRLAAKLEKAEAELDEA 41 
                 6889999999999999888888788888888888888875 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.5e-07
   PF12072.3  75 errkelqrqEkRllqkeetLdrkeeslekkeekleekekelkqkeqsle 123
                 +r  e+++ E+ l+q+e++L  +e+ l+ ke++l ++e++l  +e++l 
  MMETSP0890-20130614|3795_1  47 RRSLEMDQHEQFLNQREQSLYDREQLLKIKEHELMQREQSLYDREKQLT 95 
                 5667999999999999999999999999999999999999999999886 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.7    0.0062        42      24      67 ..       4      47 ..       1      48 [. 0.69
   2 ?    8.3   4.4   0.00027       1.9       8      48 ..      30      70 ..      26      71 .. 0.91
   3 ?    4.8   3.9    0.0034        23       6      38 ..      63      95 ..      61      97 .] 0.82

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0062
   PF13863.1 24 erkeeelkereeelekkqeelqeslikfnkflkdneakreraek 67
                 r+e+++ +re+ l + q + ++   k +k   + ++ r+ a++
  MMETSP0890-20130614|3795_1  4 TRREKDITTREADLLAAQLQSNRLAAKLEKAEAELDEARNLADR 47
                57777777777777777777777777777777777777766665 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00027
   PF13863.1  8 emeevqlaldakreeierkeeelkereeelekkqeelqesl 48
                ++e+++++ld+ r+ ++r++ e++++e+ l+++++ l +++
  MMETSP0890-20130614|3795_1 30 KLEKAEAELDEARNLADRRSLEMDQHEQFLNQREQSLYDRE 70
                578899******************************99986 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0034
   PF13863.1  6 kremeevqlaldakreeierkeeelkereeele 38
                ++ +++ ++ l+ k+ e+ ++e++l  re++l 
  MMETSP0890-20130614|3795_1 63 EQSLYDREQLLKIKEHELMQREQSLYDREKQLT 95
                566788899999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 363.20
//
Query:       MMETSP0890-20130614|3783_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   43.4   0.0    4.7e-11   42.4   0.0    1.5  1  PF00789.15 UBX domain
    0.00068   18.8   1.4     0.0012   18.0   1.0    1.4  1  PF03943.8  TAP C-terminal domain
  ------ inclusion threshold ------
      0.019   14.8   0.8      0.069   13.0   0.0    2.3  2  PF13899.1  Thioredoxin-like
       0.13   12.1   0.0       0.13   12.1   0.0    2.4  2  PF02834.11 LigT like Phosphoesterase
        2.9    7.9  13.8        5.9    7.0   9.6    1.4  1  PF03879.9  Cgr1 family


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.7e-14   4.7e-11       3      62 ..     393     455 ..     391     470 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.7e-14
                 TSSEEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCC...TSEEEEESSSTEEETSCC CS
  PF00789.15   3 aedvcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldeke...epFkLltsfPrrlltksd 62 
                  e+++rl++ +p+G    r+F +++t+  ++++v++h ++++   ++F ++t++Prr +  ++
  MMETSP0890-20130614|3783_1 393 GEPAARLRLQFPNGAKVDRKFFPHHTLAHLRDFVQLHVHDNDidlQSFAFATNYPRRVFNFQN 455
                 6889*************************************966566**********997666 PP

>> PF03943.8  TAP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.0   4.5e-07    0.0012       2      41 ..      85     124 ..      84     128 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.5e-07
                 HHHHHHHHHT-S-HHHHHHHHHHTTT-CHHHHHHHCCCHH CS
   PF03943.8   2 emvkalsaqsgmnlewsqkclednnWdYerAaqaFtelks 41 
                  m+  +s+ +g+  + s++ le ++Wd  +Aa+ F + ++
  MMETSP0890-20130614|3783_1  85 NMIAQMSQITGLDWDESRMFLEMSDWDLSQAAEIFYSEQK 124
                 7**********************************88766 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.5e-05     0.069       5      79 ..     201     278 ..     198     280 .. 0.83
   2 ?   -1.7   0.2      0.99   2.7e+03       4      17 ..     342     355 ..     339     368 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.5e-05
   PF13899.1   5 dldealakareegkpllvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanleldrqg...vPvvvf 79 
                  +++a   a  + k+llv+++++   d   + + vl ++e+ ++l+++fv++ +dv   d+   +   g   +P++++
  MMETSP0890-20130614|3783_1 201 SYKNAARLALNRSKALLVLLKSSMHQDTDEFCKKVLGSRELNQYLNQNFVVWGADVSGIDGYFLMNALGvarLPFLAV 278
                 68899999***********************************************98888744333333455666666 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.99
   PF13899.1   4 sdldealakareeg 17 
                 + l++++akar+e+
  MMETSP0890-20130614|3783_1 342 ASLEADRAKARAEE 355
                 56667777776654 PP

>> PF02834.11  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.6      0.84   2.3e+03       4      22 ..     354     372 ..     316     379 .. 0.77
   2 ?   12.1   0.0   4.7e-05      0.13      10      50 ..     395     430 ..     386     467 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.84
                 THHHHHHHHHHHHHHHHHH CS
  PF02834.11   4 peeiaeelarlaaeleral 22 
                 +ee++++  r++ae+++ +
  MMETSP0890-20130614|3783_1 354 EEEVRQRQLRIQAEHDEIQ 372
                 4666777777777777544 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHTEEE----GGG-EEEEEEEEEESHHHH CS
  PF02834.11  10 elarlaaeleralaklglkpvrpfnpHiTLaflgevdeekv 50 
                  +arl+ ++       g+k++r+f pH TLa+l++  +  v
  MMETSP0890-20130614|3783_1 395 PAARLRLQFP-----NGAKVDRKFFPHHTLAHLRDFVQLHV 430
                 4555555555.....8999***************9876555 PP

>> PF03879.9  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.6    0.0022       5.9      28      97 ..     309     377 ..     298     385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0022
   PF03879.9  28 ltsyekreekrkeqeaiKerekelkeEkeeerqrrieaikerraakeekeRyeklaakmhakkveRlkrr 97 
                 +  y  r e  ++qe++++r ++l++E+++e q+  ea + + a++ee  R  +l+ +  +  ++R+k  
  MMETSP0890-20130614|3783_1 309 TGRYRSRLESSRRQEEARQRDRALRQEQDQEFQASLEADRAK-ARAEEEVRQRQLRIQAEHDEIQRRKNE 377
                 557999******************************998875.667778899999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1185  (0.0866735); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.16u 0.41s 00:00:01.56 Elapsed: 00:00:01.22
# Mc/sec: 936.94
//
Query:       MMETSP0890-20130614|3825_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0063   16.0  18.4     0.0063   16.0  12.7    2.1  2  PF04156.9  IncA protein
  ------ inclusion threshold ------
       0.18   12.0  12.4       0.36   11.0   8.6    1.4  1  PF07336.6  Protein of unknown function (DUF1470)
        1.1    8.1   7.6        4.1    6.2   5.2    1.8  1  PF03313.10 Serine dehydratase alpha chain


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  12.7   1.4e-06    0.0063      66     183 ..       9     117 ..       2     123 .. 0.68
   2 !    5.0   7.1    0.0033        15      80     142 ..     148     214 ..     133     240 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-06
   PF04156.9  66 vqseedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellq.eelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklae 183
                 ++ e++ ++       + +e+++++    + l+ l++ l+e+ ++++ l++ +   +  +++s+++rle+  e ++++ake +elr   s+l  +v+ ++ +++ l+e+l  l+ + ++
  MMETSP0890-20130614|3825_1   9 KSREKSLDL-------RATELKNEIESKKKRLDYLRTALEETRRQNSVLKQKYPAQRaLLNTSKKKRLEEYHELFQAAAKEQAELR---SRLLKAVEAQKRDAKLLEEALKKLEAAAQR 117
                 344444444.......5577777777777777777777777777777777777777777789************************...555555555555555555555555555444 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0033
   PF04156.9  80 qeelsesesqlseleeeleqleerlaeleseledleedlellq....eelksleerlesleesikel 142
                  +e s s+++ +el+e+ ++ e++l++ + +l+++ e+++ ++    e+lk+ e+  +  + ++ +l
  MMETSP0890-20130614|3825_1 148 LQEESGSITEYNELQEQCSKAETQLEAVSIQLKNVLEQEQRARanylEFLKQDEQGKLRTQANLLAL 214
                 468899999999*********************9999999999999988888777655555555555 PP

>> PF07336.6  Protein of unknown function (DUF1470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   8.6   7.9e-05      0.36      49     117 ..      79     147 ..      52     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.9e-05
   PF07336.6  49 llaaaraLRealrrlfaaaaagdepaadalallnrllaeaparprlaaddgdwrlrlarataplaalla 117
                 ++ +  +LR++l  +++a++ ++ + ++al  l++++ + +a+ r ++ d +w+ ++ar  a +a+lla
  MMETSP0890-20130614|3825_1  79 AAKEQAELRSRLLKAVEAQKRDAKLLEEALKKLEAAAQRRSAALRGDDADTPWAQAAARERAAAAQLLA 147
                 1334449*******************************9998877777888888888888888899887 PP

>> PF03313.10  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.2    0.0009       4.1      40     114 ..      64     225 ..      23     226 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0009
  PF03313.10  40 dveaglevlegilpgdlevarral..........................................................................................alnkklaeeglegsygkkaeaevlked...............plelldravalalAvseenaaggr 114
                 + ++ le+  ++ ++ ++++ +++                                                                                          +l++ l++                  +               +++l ++a++lalA s++ + +++
  MMETSP0890-20130614|3825_1  64 SKKKRLEEYHELFQAAAKEQAELRsrllkaveaqkrdaklleealkkleaaaqrrsaalrgddadtpwaqaaareraaaaqllalqeesgsiteynelqeqcskaetqleavsiQLKNVLEQ------------------EqraranyleflkqdeQGKLRTQANLLALALSDAEMRMHT 225
                 44444444444444444444444444445555555555566666666666667777777888888888888888888777777777777766666555555544444443332222222222..................1222223333333334799*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1867  (0.136556); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.10
# Mc/sec: 544.63
//
Query:       MMETSP0890-20130614|3819_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-24   85.6   0.0    4.1e-24   84.7   0.0    1.4  1  PF06414.7 Zeta toxin
    6.6e-08   32.4   0.0    2.1e-07   30.8   0.0    1.8  1  PF13671.1 AAA domain
     0.0086   15.5   0.2      0.025   14.0   0.1    1.8  1  PF13833.1 EF-hand domain pair
  ------ inclusion threshold ------
      0.019   14.1   0.2       0.12   11.5   0.0    2.3  4  PF12846.2 AAA-like domain


Domain annotation for each model (and alignments):
>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.2e-27   4.1e-24      11     176 ..     234     398 ..     224     415 .. 0.90

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 1.2e-27
   PF06414.7  11 peqekpkavllgGqpGAGKtslaellleela..agnivridaDelrkyhpayrelekkdpkeaseltqkdaselveklidralekgyniilegtlrspdkarkiarklkk..agykvevvivavpkelSelgilqRyeeelaekgeg.Rrvpkevhdeayeglpesveale 176
                  ++++p +v+ +G  GAGK++  + +  +     +niv+id+D+++++ p+y e  ++d ++a ++ +++++ l+e + + a+e++ ++ ++g lr+ ++  k +++l++    y++ +++v +++++ ++++++R e+       g R vp++v +++    p++++al 
  MMETSP0890-20130614|3819_1 234 APERRPWLVFTAGAMGAGKSHSMNWMSARDIfpLRNIVHIDPDRFKQMMPEYPEYLRRDRASAGTMCHRESGLLAELAQEIAMEQRLHVWVDGSLRDFEWHAKNIEQLRArhPYYRIALFYVHASEATVRTRVKKRAERL------GgRDVPETVLSASLAAPPHTLRALT 398
                 4779*****************999887774469**********************************************************************77777752378**************************......66***********999999999875 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     6e-11   2.1e-07       1     136 [.     241     386 ..     241     389 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6e-11
   PF13671.1   1 lvllvGlpGsGKstl.....aerllkklgyvrlsqdtlrkrlfg....tdqqsktdytrvlkrlyqilnklarkal.sagrsvivdatnls.reerarfvkl.akrlgvpvrivylevpeetlreRlakRerngddrsevpeealdrm 136
                 lv++ G+ G+GKs+      a+ ++  + +v+++ d +++ + +      + + ++   + +r  + l++la++ + +++ +v vd  +++ +++ + + +l a++  ++++++y++++e+t r R++kR+++ + r +vpe +l + 
  MMETSP0890-20130614|3819_1 241 LVFTAGAMGAGKSHSmnwmsARDIFPLRNIVHIDPDRFKQMMPEypeyL-RRDRASAGTMCHRESGLLAELAQEIAmEQRLHVWVDGSLRDfEWHAKNIEQLrARHPYYRIALFYVHASEATVRTRVKKRAERLGGR-DVPETVLSAS 386
                 799***********855555555564445********999998877742.333333445666777899999998773666778888888884577789999988888899*********************975544.6888887765 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   7.3e-06     0.025       2      37 ..      41      75 ..      40      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.3e-06
   PF13833.1  2 kGlItreeLkralallglkglseeevdilfrefDtd 37
                +Gl++ + +k+ l++l+l+ l+++ev+ lf ++ +d
  MMETSP0890-20130614|3819_1 41 DGLMDLQGFKHLLSALKLH-LKDDEVTYLFQHLAFD 75
                8**********99999999.**********988665 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.88     3e+03     109     129 ..     165     191 ..      71     226 .. 0.51
   2 ?   11.5   0.0   3.4e-05      0.12       2      37 ..     240     275 ..     239     298 .. 0.84
   3 ?   -1.5   0.0      0.31   1.1e+03      35      50 ..     421     436 ..     389     472 .. 0.69
   4 ?   -1.1   0.0      0.22   7.6e+02      35      51 ..     421     439 ..     413     583 .. 0.60

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.88
   PF12846.2 109 d......eeeaalsralrelyeeegia 129
                 d      e +++ +r+l++++ ++ + 
  MMETSP0890-20130614|3819_1 165 DnigyvgELKQIRQRVLDRAWHGNYSP 191
                 233334455666666666666655555 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.4e-05
   PF12846.2   2 pntlilGppGsGKSvllkklvlqllargprvviiDp 37 
                 ++++  G +G+GKS  ++ +  + +   +++v iDp
  MMETSP0890-20130614|3819_1 240 WLVFTAGAMGAGKSHSMNWMSARDIFPLRNIVHIDP 275
                 78999***************9999999999999998 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.31
   PF12846.2  35 iDpggeysglaralgg 50 
                 +D+ g++ ++a+++gg
  MMETSP0890-20130614|3819_1 421 VDTSGDWTRIAEMFGG 436
                 4677777777777765 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.22
   PF12846.2  35 iDpggeysglaralgg..q 51 
                 +D+ g++ ++a+++gg  +
  MMETSP0890-20130614|3819_1 421 VDTSGDWTRIAEMFGGfyR 439
                 5777777777777765322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:01.01
# Mc/sec: 1392.73
//
Query:       MMETSP0890-20130614|3829_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 863.35
//
Query:       MMETSP0890-20130614|3832_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0073   15.5   4.1     0.0094   15.2   2.8    1.1  1  PF03357.16 Snf7
  ------ inclusion threshold ------
      0.038   14.2   1.2       0.49   10.6   0.2    2.1  2  PF01850.16 PIN domain
       0.19   11.5   5.6       0.58    9.9   1.3    2.7  2  PF05267.7  Protein of unknown function (DUF725)
       0.32   10.8   4.6       0.19   11.6   2.0    1.5  2  PF08269.6  Cache domain
       0.52   10.3   3.4       0.77    9.7   2.3    1.3  1  PF08702.5  Fibrinogen alpha/beta chain family
        3.3    7.4   8.5       0.57    9.8   2.5    1.9  2  PF00430.13 ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.8   4.1e-06    0.0094      41     124 ..      26     111 ..      10     121 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.1e-06
  PF03357.16  41 drAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdid..kidklmdeiedqmekadeis 124
                 ++A +++k +++y+k+   +d+  a ++ +  a++ a ++  ++n+mk++a +  +  k++d +   +d++ d ++ + +ka++i+
  MMETSP0890-20130614|3832_1  26 KTAANAAKSLYQYNKEHHITDKAAAGVTDAIRAAKKADNEYNIVNTMKNVATEATSRAKQIDSQyhVVDRTRDGLQAASAKAKQIN 111
                 57889***********************************************9999999998663259999999999999999987 PP

>> PF01850.16  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.06   1.4e+02      99     119 ..       1      21 [.       1      23 [. 0.87
   2 ?   10.6   0.2   0.00021      0.49      58     105 ..      57     110 ..      28     118 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.06
                 HHHHHT-EEEEES-HHHHCHC CS
  PF01850.16  99 tAkahgikliaTfDedfrrva 119
                 tA a+g+ ++ T+D+++ ++ 
  MMETSP0890-20130614|3832_1   1 TAAATGAAVLTTRDDELGQMS 21 
                 899*******99***997765 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00021
                 HHHHHHHCCSEEE-......HHHHHHHHHHHHHCC..S-HHHHHHHHHHHHHT- CS
  PF01850.16  58 lelllllsalkilp....ideevaeeaaelaekyg..lrpnDalilAtAkahgi 105
                 +++    ++++i++    + +e   +a+++  +y    r+ D l++A Aka +i
  MMETSP0890-20130614|3832_1  57 RAAKKADNEYNIVNtmknVATEATSRAKQIDSQYHvvDRTRDGLQAASAKAKQI 110
                 55556677888888555566677777777777777***************9877 PP

>> PF05267.7  Protein of unknown function (DUF725)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3   0.00026      0.58      83     116 ..      64      97 ..      22     100 .. 0.80
   2 ?    1.1   0.0      0.13     3e+02      32      51 ..     100     119 ..      95     125 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00026
   PF05267.7  83 agsensktlysisaNasesasslkeqlraielte 116
                 +  + ++t+ ++++ a++ a ++ +q+++++ t+
  MMETSP0890-20130614|3832_1  64 NEYNIVNTMKNVATEATSRAKQIDSQYHVVDRTR 97 
                 3345577899999999999999999999998876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
   PF05267.7  32 ikaadneteqiledaaeerk 51 
                 ++aa+++++qi++d++ +++
  MMETSP0890-20130614|3832_1 100 LQAASAKAKQINQDYKIDQR 119
                 57889999999999988776 PP

>> PF08269.6  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.0   8.3e-05      0.19      12      69 ..      21      77 ..      11      96 .. 0.82
   2 ?   -0.5   0.1      0.49   1.1e+03      20      31 ..      80      91 ..      70     118 .. 0.41

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.3e-05
                HHHHHH----TTHHHHHH----.....--HHHHHHHHHH--SS-----EEE-----EE CS
   PF08269.6 12 lknvvemalsiieelekqakegklseeeAqeqakallkklrydkdgYffviDsngtev 69
                 +nv ++a +++++l++ +ke ++++++A   +++++++ +  +++Y +v+ ++++ +
  MMETSP0890-20130614|3832_1 21 SRNVGKTAANAAKSLYQYNKEHHITDKAAAG-VTDAIRAAKKADNEYNIVNTMKNVAT 77
                578889**************99998887765.58888**************9998765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.49
                --TTHHHHHH-- CS
   PF08269.6 20 lsiieelekqak 31
                 s ++++++q  
  MMETSP0890-20130614|3832_1 80 TSRAKQIDSQYH 91
                444444433322 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.3   0.00034      0.77      27     130 ..      17     117 ..      14     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00034
                 HCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  27 ldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdiaqk 130
                 l +  ++v k+  +  ++L q++++++ +++    +++ ++ ++k +++  ni  ++ k++ ++  +   k+i++q + ++  ++ l++ + k ++  qd ++ 
  MMETSP0890-20130614|3832_1  17 LGQMSRNVGKTAANAAKSLYQYNKEHHITDKAAAGVTDAIRAAKKADNEY-NI-VNTMKNVATEA-TSRAKQIDSQYHVVDRTRDGLQAASAKAKQINQDYKID 117
                 5567889999999999*************************999885544.44.45566668888.66667788888888888888888888888888876655 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5   0.00025      0.57      26     106 ..       8      88 ..       5      93 .. 0.85
   2 ?    0.4   0.5      0.21   4.7e+02      33      70 ..      84     110 ..      80     120 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00025
  PF00430.13  26 kiLdeRkekIankikeaeerlkeaaellaeaeqqleqArkeaseiienakkeaqklkeeilaeaekdierllesakaeiek 106
                 ++L++R+++  +  +++ +++++aa+ l+++++++  + k a+ + ++ +++++   e  +  + k + +   s +++i  
  MMETSP0890-20130614|3832_1   8 AVLTTRDDELGQMSRNVGKTAANAAKSLYQYNKEHHITDKAAAGVTDAIRAAKKADNEYNIVNTMKNVATEATSRAKQIDS 88 
                 689********************************9999999988888777777777777788888887777777777766 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.21
  PF00430.13  33 ekIankikeaeerlkeaaellaeaeqqleqArkeasei 70 
                 ++I ++   ++++++  +++ a+a+q           i
  MMETSP0890-20130614|3832_1  84 KQIDSQYHVVDRTRDGLQAASAKAKQ-----------I 110
                 55555555555555555555555554...........3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1307  (0.0955968); expected 273.4 (0.02)
Passed bias filter:                      697  (0.0509801); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 360.86
//
Query:       MMETSP0890-20130614|3827_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       835  (0.0610737); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:01.02
# Mc/sec: 1313.30
//
Query:       MMETSP0890-20130614|3826_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-34  116.1   2.3    2.2e-33  114.3   0.2    2.5  2  PF09111.5  SLIDE
     0.0003   20.6   0.3     0.0013   18.6   0.1    2.2  2  PF00249.26 Myb-like DNA-binding domain
    0.00035   20.2   0.3     0.0011   18.6   0.0    2.0  2  PF00271.26 Helicase conserved C-terminal domain
     0.0078   16.1   2.8      0.021   14.7   1.0    2.5  2  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.12   4.2e+02      54     111 ..      54     113 ..      34     118 .. 0.83
   2 !  114.3   0.2   6.4e-37   2.2e-33       1     117 [.     365     477 ..     365     478 .. 0.99

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.12
   PF09111.5  54 eeeDrflll..mvyklGldkeglyekikeeirksplFrFDwflksRteqelsrRvetLlk 111
                 e  Dr l+l   v + G  +e++ ++ k++++++ +F  D  + s++++     ++tLlk
  MMETSP0890-20130614|3826_1  54 ERADRKLFLdaAVIQQGRLAEQNTSMSKNDLMTMVRFGADEIFSSKQSTLTDEDIDTLLK 113
                 6778888873345677888999999********************999999998888886 PP

  == domain 2    score: 114.3 bits;  conditional E-value: 6.4e-37
   PF09111.5   1 yekyikrIekgeekiekkkeqekllkkkleqyknPlqeLkikYppknkkktyseeeDrflllmvyklGldkeglyekikeeirksplFrFDwflksRteqelsrRvetLlkliekel 117
                 +ek i++I +ge+++ + +e ++ll +k+++  +P++ L ++Y+ ++ +k+ +eeeD fl++m++k+G+   g++e+i+ eir+ ++F+FDwf++sR++ el++R++ L+k ieke+
  MMETSP0890-20130614|3826_1 365 WEKTIDKISRGEKRLARANEIRTLLASKVQRHIAPWECLPVNYG-SSRGKVWTEEEDSFLINMMHKFGY---GNWERIRIEIRNAWQFNFDWFFRSRNAPELQKRADLLIKNIEKEN 477
                 89******************************************.999*********************...*******************************************97 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.84   2.9e+03       3      38 ..     309     346 ..     308     351 .. 0.71
   2 !   18.6   0.1   3.8e-07    0.0013       3      30 ..     414     441 ..     412     445 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.84
                 SS-HHHHHHHHHHHHHTTS-.HHHHHHHCT..TTS-HH CS
  PF00249.26   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlk 38 
                  WT  +   ++ a ++ G ++ + I + +   +g+t  
  MMETSP0890-20130614|3826_1 309 DWTRKDYRSFIAALERRGRDDIENITKDVAteTGKTIT 346
                 69999999999999999988666666666655555555 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.8e-07
                 SS-HHHHHHHHHHHHHTTS-.HHHHHHH CS
  PF00249.26   3 rWTteEdellvdavkqlGggtWktIart 30 
                  WT+eEd  l++  +++G g+W++I  +
  MMETSP0890-20130614|3826_1 414 VWTEEEDSFLINMMHKFGYGNWERIRIE 441
                 7***********************9655 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07    0.0011      47      78 .]       1      32 [.       1      32 [. 0.96
   2 ?   -3.2   0.0       2.1   7.2e+03      17      46 ..     118     147 ..     108     148 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.2e-07
                --STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26 47 idlpdvnvVinfdlprsvtsyiQriGRtgRag 78
                i+l  ++ V+ +d +++++  +Q+++R++R+g
  MMETSP0890-20130614|3826_1  1 INLATADIVVLYDSDWNPQVDLQAMDRAHRIG 32
                89999*************************87 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.1
                 S-HHHHHHHHHHHHTTTSSEEEESTTC-S- CS
  PF00271.26  17 lpqnereeileqfnagkskvlvatnvaerG 46 
                  ++++  +i ++++++  ++ ++t+ ae++
  MMETSP0890-20130614|3826_1 118 RTKEQAAKIQSDVQHNLADFSLTTKDAEES 147
                 567777888888888888888888877766 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.98   3.3e+03      19      31 ..     272     284 ..     251     287 .. 0.69
   2 !   14.7   1.0   6.2e-06     0.021       1      39 [.     415     466 ..     415     482 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.98
   PF13921.1  19 dWseIaeel.grRt 31 
                 ++++Ia+++ + R 
  MMETSP0890-20130614|3826_1 272 EFHQIAQAIeA-RL 284
                 78999999944.65 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6.2e-06
   PF13921.1   1 WtdeEdeiLlklveeygn.dWseIaeelg............rRtplacqdrw 39 
                 Wt+eEd  L++++ ++g+ +W  I  e++            +R + ++q r 
  MMETSP0890-20130614|3826_1 415 WTEEEDSFLINMMHKFGYgNWERIRIEIRnawqfnfdwffrSRNAPELQKRA 466
                 *****************989****8777436666677775555556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1087  (0.0795056); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.40s 00:00:01.64 Elapsed: 00:00:00.95
# Mc/sec: 1657.27
//
Query:       MMETSP0890-20130614|3822_1  [L=1366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-62  210.7   0.0    8.1e-62  209.1   0.0    1.7  1  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.1   0.0   5.9e-66   8.1e-62      11     290 ..     896    1240 ..     883    1246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 209.1 bits;  conditional E-value: 5.9e-66
                  -TT-THHHHHHHHHHHH......---GGGS---------.HHHHHTTS-HHHHHHHHHHH......HS----..------------HHHHHH----HHHHHHHH--------B--S------......-TT------SS-HHHHH---TTTT-----EEEEE-SS------TTTTTT-..TTEEEEEEEETT..SSST--.............-TT----------E...........................................EEEEE----.--HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-TT----B-----HHHHHHHHHHH..H----EEEB------ CS
  PF00850.14   11 hpespeRlsavlsllke......kglleelevikpreat.keelllvhspeYleqleela.sekeeelallg..lesdtplspgsleaallaagavieavdlvlegevrkafvairppGHHA......ekdsasGFCllNnvaiaakyllkkhglkrvlivDfDvHhGnGtqeifysd..psvltlSlHdyeeefyPgtg.............aadevgegkgkgyn...........................................lniplepgt.sdeeylkafekilkpllekfkpelvlvsaGfDalagDplgrlnlteegyaeltrdllela..lakgkvvlvleGGYn 290 
                   +e+++R  a++s l++      ++l  + +v ++  ++ ++ l+ +h++ Yl +l++ + + +++++ l+g   + dt  ++ +++a+ +a gav++a+d+v++ge+++a +a+rppGHHA       ++ ++G+C+lN++a++aky+++++gl+rv+++DfDvHhGnGtq+i++++  p +l++S+H   e +yPgtg             a            +                                           lniplep   + + +l+   + + + le f p+lv++saGfDa++ Dp++  +l++++y e+tr++l+l+  l+ g+vv+vleGGY 
  MMETSP0890-20130614|3822_1  896 CVEQSRRAVAAASVLQKllvtkhRSLWVHRNVPNDYIIRaQALLSYAHDHTYLAELRRRCyDLESNATMLFGedDDFDTCGNRDTWDASVAASGAVLTAIDAVACGEAKNALCAVRPPGHHAgaticaLGAPSNGYCVLNHAALGAKYAVHERGLRRVAVLDFDVHHGNGTQDILARTydPAFLFISVHAAGEDVYPGTGrspsnclaearkqA------------QvegiesprrrsssilqpssstierdrhcgvddhlttvsfhpgvLNIPLEPPPmTADWLLDRALPRIRSELEVFGPDLVIFSAGFDAHKRDPVQLGRLDADDYGEFTRQILTLCdgLCCGRVVSVLEGGYG 1240
                  67888888887777777444432223334444444445523345699*********9999633333333444336666999*****************************************777777799********************************************76444*******************933333333333330............22333344444444555555555555566666777777888888******99856666778888999999************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.64u 0.37s 00:00:02.00 Elapsed: 00:00:01.10
# Mc/sec: 2975.84
//
Query:       MMETSP0890-20130614|3838_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-61  207.2   0.3    3.2e-61  206.6   0.2    1.1  1  PF02423.10 Ornithine cyclodeaminase/mu-crystallin family
    1.4e-06   28.1   0.0    4.3e-06   26.6   0.0    1.9  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
    0.00018   21.7   0.1     0.0012   19.1   0.0    2.4  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
      0.001   18.1   0.0     0.0018   17.3   0.0    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.002   18.5   0.0     0.0047   17.3   0.0    1.7  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
  ------ inclusion threshold ------
      0.027   13.4   0.0      0.051   12.5   0.0    1.4  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain


Domain annotation for each model (and alignments):
>> PF02423.10  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.6   0.2   1.4e-64   3.2e-61      10     310 ..     151     463 ..     145     466 .. 0.93

  Alignments for each domain:
  == domain 1    score: 206.6 bits;  conditional E-value: 1.4e-64
                 HHHTT--HHHHHHHHHHHHHHHH----B---..-EEE----....--EEEE--B---..-E-EEEEE.-----TT----S--EEEEEE-S----EEEEE.E-HHHHHHH-------HHHHHS-TT-.--B--B----HHHHHHHHHHHHS----EEE--SSCHHHHHHHHHHH...H----EEE-THHHHTSSSEEEE----SS..-SB-CCC-----EEEE----------B-HHHHHTEEEEES-HHHHH-----HH......---TTEEEE--------------SS-EEEEE----HHHHHHHHHHHHHHH CS
  PF02423.10  10 eveeevlldellkaveaafrrlasGafdepP..kvelhvrdg..rgvievmPaylggrelagvKlvn.shpenkksglptvtalvvLndpetGlplalm.datllTalRTaAvsavaaKyLarkda.stlaiiGaGvqaetqlealsavlpieeiriydideeaaekfaenvqe.fefevvavksaeeavegadivvTvTaakeaapilkaewvkpGahinavgadrpgktelddeilkradivvdyeaqareeGeiqq......laddelvaelgdvitGkktGrtsdeeitvfdstGlaveDvaaaklvyera 310
                  ++e+v ++++++ave+af +la+G++d p   +++++ +d+  +g+ +++  y +g   ++vKl   s+ +n ++glp   +++v +  +tG+ la+m ++ +lT+lRT+A++a+a+KyL r d  +t+a+iG+G  a+  ++a  av +  e+  +d +  + e+fa++++e  +   +av+sa+ea ++adi+ T T+  +  ++l+  w+kp+a i a g+d+p k+el  +++ ++++v+d   q+ + Ge+        +  d+++aelg++i+G+k+Grtsd+e++v+d tG++ +D a++++ + ++
  MMETSP0890-20130614|3838_1 151 TIKEHVKVEDAIEAVEEAFGKLAQGQVDVPLpmHIGINETDEygPGDCHIKGGYVSGAPTFTVKLAMvSFYKNLERGLPPGAGVFVVVCAKTGATLAVMqENRYLTDLRTGAAGALAVKYLTRGDQdKTIAFIGCGQIAKNMARASHAVKSNFEAVAFDPNRPNCEAFASTMSEeLGLSFEAVSSAHEACRRADIIFTQTPGGA--TVLERRWLKPHATIIASGSDQPTKQELPVDLISHSKYVADLTRQTAKVGELRSaiqagaMTIDDVHAELGQIINGEKPGRTSDNELIVVDLTGTGGQDAAIGSVAWSKL 463
                 68999********************66666500555666666889************99*****965167799************************994466********************886379**********************999999*****************77*************************999..****************************************************99************************************************9988776 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.9e-09   4.3e-06       2      73 ..     278     358 ..     277     390 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.9e-09
                 BEBEEB-------HHHH..HHHH---EEEE--SSHHHHHHHHHTT.......EEE-SSHHHHHHHBSEEEE-SSSHHHHHH CS
  PF03446.10   2 kkigfiGlGvMGspmal..nllkagyevavynrtkekveelvaeg.......akaaesieelvasldvvilmvkagkavde 73 
                 k+i+fiG G++ ++ma+  + +k+++e ++++ ++ ++e+++++        ++a++s+ e+++++d++++  + g+ v e
  MMETSP0890-20130614|3838_1 278 KTIAFIGCGQIAKNMARasHAVKSNFEAVAFDPNRPNCEAFASTMseelglsFEAVSSAHEACRRADIIFTQTPGGATVLE 358
                 78*************9733569********************9978899999*******************9999987643 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.8   6.4e+03      12      39 ..      81     109 ..      78     112 .. 0.76
   2 !   19.1   0.0   5.2e-07    0.0012       1      68 [.     279     349 ..     279     355 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.8
  PF03807.12  12 ealakglaaaga.qkheviiaasrspeka 39 
                 +  a++l+a g+ ++ ++ + + ++ e++
  MMETSP0890-20130614|3838_1  81 AEYAERLVADGFdSAASISLLSVQDLERR 109
                 55689999999988888887777777765 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 5.2e-07
  PF03807.12   1 kigiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelg......vkvtavsneeaaeeadvvila 68 
                 +i++iG+G+i++ +a+   a   ++ e + a +++    e++a +++       ++++ s+ ea+++ad+++  
  MMETSP0890-20130614|3838_1 279 TIAFIGCGQIAKNMARASHAVK-SNFEAV-AFDPNRPNCEAFASTMSeelglsFEAVS-SAHEACRRADIIFTQ 349
                 69*************9766665.557777.779999999***9999999999888888.9***********975 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     8e-07    0.0018      28     100 ..     269     351 ..     243     356 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8e-07
                 CG-B-.GGGSEEE-B-------HHHHHHHH---..EEEE--SS--........HHHH---..EE-.-CCCCCCC-SEEEE--- CS
  PF02826.14  28 allgkelsgktvGiiGlGrIGqavakrlkafgm..kvlaydrskkkee.....eeeelga..evv.sleellaesDvvslhlp 100
                 ++l +  ++kt++ iG+G+I++++a+  +a++   + +a+d+++ ++e       eelg   e v s +e+++++D+++  +p
  MMETSP0890-20130614|3838_1 269 KYLTRGDQDKTIAFIGCGQIAKNMARASHAVKSnfEAVAFDPNRPNCEafastMSEELGLsfEAVsSAHEACRRADIIFTQTP 351
                 556666789*****************999765433899*****998887777644455542244459999*******998887 PP

>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-06    0.0047       2      72 ..     279     352 ..     278     379 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.1e-06
                 EEEEE----HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHHHHHCTHH......CCSSHHHHHHSTT-SEEEE-S-G CS
  PF01408.17   2 rvgivGaGkigsrhlrplnesqrreelvalvdpdperaeavaesfgve......aysdleelledpkidavivatpn 72 
                  ++++G+G+i+++++r+ ++ ++++e v ++dp+ ++ ea+a +   e      a+s+  e ++  + d+++  tp 
  MMETSP0890-20130614|3838_1 279 TIAFIGCGQIAKNMARASHAVKSNFEAV-AFDPNRPNCEAFASTMSEElglsfeAVSSAHEACR--RADIIFTQTPG 352
                 589***********************99.68**********66665553331445555555555..78888888876 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05     0.051      73     116 ..     336     379 ..     329     411 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
                 ---HHHHSSEEEE--.-----B-GGG-----EEEE---EEC..TT CS
  PF02882.14  73 laeilreaDivvvav.GkpelvkaemvkegavviDvGinrvkekg 116
                  +e +r+aDi+ + + G + ++++ ++k++a++i  G ++  +k+
  MMETSP0890-20130614|3838_1 336 AHEACRRADIIFTQTpGGATVLERRWLKPHATIIASGSDQP-TKQ 379
                 6789*******986548999***************999987.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:01.05
# Mc/sec: 1065.81
//
Query:       MMETSP0890-20130614|3841_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0082   15.8   0.0      0.014   15.0   0.0    1.4  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.21   11.1   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-06     0.014       7      56 .]      72     125 ..      71     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.1e-06
   PF13893.1   7 kfGkverikifrkk..ggqAfve..fdtveaArkakeylngvklygktLkveys 56 
                 k+G+ e+++i ++   +  + +   f++++ A ka+  l g+ + g+++  e+s
  MMETSP0890-20130614|3841_1  72 KYGNLEDCVIDHEAsaSDAVVIAlkFKNKNHAVKAFLDLRGRFFAGRQISAEFS 125
                 89*******9999987444443355*************************9998 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.1e-05      0.21      21      69 ..      72     120 ..      69     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.1e-05
                 TCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  21 kfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 k+G  e++ + ++   +   +   +F+++  a kA   l g+ + gr++
  MMETSP0890-20130614|3841_1  72 KYGNLEDCVIDHEASASDAVVIALKFKNKNHAVKAFLDLRGRFFAGRQI 120
                 677777777777777777778889***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.57
# Mc/sec: 557.77
//
Query:       MMETSP0890-20130614|3849_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 213.83
//
Query:       MMETSP0890-20130614|3837_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-12   46.9   0.0    5.1e-12   46.1   0.0    1.4  1  PF13519.1  von Willebrand factor type A domain
    6.9e-07   29.0   0.0    1.2e-06   28.2   0.0    1.4  1  PF00092.23 von Willebrand factor type A domain
    8.4e-05   21.5   1.3      0.005   15.6   0.0    2.2  2  PF00362.13 Integrin, beta chain
  ------ inclusion threshold ------
      0.029   13.7   0.1       0.04   13.3   0.0    1.3  1  PF07994.7  Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.5e-15   5.1e-12       1     168 [.      72     267 ..      72     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.5e-15
   PF13519.1   1 dlvlvlDvSgSMnaedvsptrldaakaalkdlldel........pgdrvglvafsgsa.......elvapltsdraalkaalnsldprlmpgggtnlaaalalalellakadgrraaivlvtDG.....edn...........ssdieaasalkragikiyvvgvgsdega.....eallkelaeatggryfdassdaeeleaa 168
                 dl++++D +gSM  +      ++aa++ +++++++          + r+glv++++ +         v+++t++++  k a+ns+++ +  +g +++ aal +a+++ ++ + + +  v++ D      e++            ++++++++l + g+ +y+v + ++ ++     ++++ ++ae tgg+++ + ++a+ l+++
  MMETSP0890-20130614|3837_1  72 DLLFLCDSTGSMGSY------IQAAQENITSIVKKIseeynekkASIRFGLVSYRDHPpqdtsfvTKVFDFTESFNEMKIAVNSMNASGGGDGPEAVTAALFQATKVSWRTN-ATKISVIIADApphglEPTgdgfpngdpdgHDPFSVVKELVEIGVVLYSVCCEPSLSSsyrfaRDFFIKIAELTGGQAIAL-DSAQLLADV 267
                 799*********999......66666666666664223333321555********964343333356899*****************9888899*************99998.99999*****7666673334445444434455556999*****************9998999889****************.467777665 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.6e-10   1.2e-06       1     117 [.      72     192 ..      72     227 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.6e-10
                 EEEEEEE-STTS-HHHHHHHHHHHHHHHHHH.....CCTTTEEEEEEEESSSEE.......EEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEEE-----C- CS
  PF00092.23   1 DivfvlDgSgSigeenfekvkefikkliekld....igpdsvrvglvqyssdak.......tevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvillTDGksnd 117
                 D+ f+ D+ gS+g   +++++e i ++++k++      + s+r+glv+y +++         ++++++  s++e++ av  n+   +gg +  +A  +al + ++   + r na k+ +++ D  ++ 
  MMETSP0890-20130614|3837_1  72 DLLFLCDSTGSMGS-YIQAAQENITSIVKKISeeynEKKASIRFGLVSYRDHPPqdtsfvtKVFDFTE--SFNEMKIAV--NSMNASGGGDGPEAVTAALFQATKV--SWRTNATKISVIIADAPPHG 192
                 99***********9.666677777777776655666****************9988888778888888..577888778..5555556666666666666665555..5688***********66654 PP

>> PF00362.13  Integrin, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.6    0.0045        15      77     150 ..      48     122 ..       2     132 .. 0.64
   2 !   15.6   0.0   1.5e-06     0.005     181     244 ..     132     191 ..     125     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0045
  PF00362.13  77 qkvklklrpgeaakfklkvkqaedypvDLYyLmDlslsm....kddleklkklgtklakelkkitsnfrlGfGsfvdk 150
                 +++ +k  ++e++++     +     +DL +L D + sm    +   e+++++ +k+++e ++   ++r G+ s+ d 
  MMETSP0890-20130614|3837_1  48 ENMMMKSNEDEEETVA---DKEDTVELDLLFLCDSTGSMgsyiQAAQENITSIVKKISEEYNEKKASIRFGLVSYRDH 122
                 3444444444444433...33344679***********9333334668999999999999999999999999998876 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.5e-06
  PF00362.13 181 nvlsLtedveeFeeevkkqkvsgnldapeggldailQaavCkeeiGWrkearrllvfstdagfh 244
                 +v+ +te  +e + +v++++ sg  d pe+   a++Qa    +++ Wr +a+++ v+++da  h
  MMETSP0890-20130614|3837_1 132 KVFDFTESFNEMKIAVNSMNASGGGDGPEAVTAALFQA----TKVSWRTNATKISVIIADAPPH 191
                 567789999999999**********************8....59*****************998 PP

>> PF07994.7  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05      0.04      97     224 ..      27     153 ..       7     311 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
                 C-B---G-GGSTCCGTTT--SBS----HHHHHHHHHHHHHHHHHHCT.SSEEEEE-SSEE------TTT-SSHHHHHHHHHTT-TT--HHHHHHHHHHH....---EEEE-SSSTTS-SHHHHHHHHHHT-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07994.7  97 eksvyykkdfiavnqgerldnvlkektkleevekiredirefkkenkldkvvvlwtanteryvpvipgvndtlenllkaikeneeevsastlYAvaail....egvafingsPqntlsvpglvelaeekglp 224
                 + +v+  k+ ++++++e +  +++e+++++  e+ +e++++  +  +ld  ++    +t+++  +i+ +++++ ++ k i e+ +e +as  + + + +    ++ +f++ +  +t s ++++   ++ +  
  MMETSP0890-20130614|3837_1  27 Q-IVKSSKEVLKMSEKEFV--MVEENMMMKSNEDEEETVADKEDTVELD--LLFLCDSTGSMGSYIQAAQENITSIVKKISEEYNEKKASIRFGLVSYRdhppQDTSFVTKVFDFTESFNEMKIAVNSMNAS 153
                 3.45555444444443333..66689***********************..999999************************************999998777777888888877777766666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       738  (0.0539789); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.63s 00:00:01.28 Elapsed: 00:00:00.94
# Mc/sec: 1180.33
//
Query:       MMETSP0890-20130614|3850_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   10.4   0.3       0.11    9.9   0.2    1.1  1  PF04121.8 Nuclear pore protein 84 / 107
       0.35    8.7   5.3       0.45    8.3   3.7    1.1  1  PF02724.9 CDC45-like protein
          3    5.6   4.7        3.3    5.5   3.3    1.2  1  PF05327.6 RNA polymerase I specific transcription initiation factor RRN3


Domain annotation for each model (and alignments):
>> PF04121.8  Nuclear pore protein 84 / 107
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   2.5e-05      0.11     526     598 ..      54     128 ..      37     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.5e-05
   PF04121.8 526 eyelegskdslsaeee..edesikEllqykalieglkayeeWekllkekvvseskeskseselesleekleelsk 598
                 e + ++ +d+++  e+  + +s+ Ellq  +l +g  + +eWe+  +e+ v++++e+++  + ++ +++l+++ +
  MMETSP0890-20130614|3850_1  54 EEDDDDDDDDVEEVEDelSPDSLAELLQMGQLGTGESLQDEWERRKREHAVKKEREANTLAKRKQKDQQLRAFEE 128
                 4455555566655555688899***********************99************9999999999998865 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.7   9.8e-05      0.45     101     203 ..      21     121 ..       9     149 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 9.8e-05
   PF02724.9 101 vfddgdieeelekeeeerd.ayealvemkeeee..eesdedsdseddeeeeessa..................sekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekee 203
                 ++ddg+ +  l++ ++e++     l ++ +      e +ed+d++dd++ee +++                  ++ +++++++++e++ ++e+e ++  kr+++                   +
  MMETSP0890-20130614|3850_1  21 LLDDGSDDALLDEDDDESEsL---LLDDLD--TpgLELEEDDDDDDDDVEEVEDElspdslaellqmgqlgtgESLQDEWERRKREHAVKKEREANTLAKRKQK------------------DQ 121
                 567777776666663333321...212222..134333333333333333333332223344444433333322222233333333333333333333333322..................22 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.3   0.00073       3.3     222     268 ..      31      98 ..      18     179 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00073
   PF05327.6 222 lddlddeeeeellaeeeeeeeeelfdlddddseee.svesedeedee.......................a 268
                 ld++dde+e  ll++ +++   el+++dddd++++ +ve+e +   +                        
  MMETSP0890-20130614|3850_1  31 LDEDDDESESLLLDDLDTP-GLELEEDDDDDDDDVeEVEDELSP--DslaellqmgqlgtgeslqdewerR 98 
                 6777777776666665554.555655555555553033333333..2345666666666666665555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       871  (0.0637068); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.52s 00:00:01.07 Elapsed: 00:00:00.66
# Mc/sec: 882.30
//
Query:       MMETSP0890-20130614|3852_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-40  138.3   0.0    3.1e-40  138.0   0.0    1.0  1  PF00144.19 Beta-lactamase


Domain annotation for each model (and alignments):
>> PF00144.19  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.0   2.3e-44   3.1e-40      55     311 ..       1     332 [.       1     343 [. 0.88

  Alignments for each domain:
  == domain 1    score: 138.0 bits;  conditional E-value: 2.3e-44
                 THHHHHHHHHHTTTCTGG..TTSBGGGGST............TG.SGTTCSCBHHHHHTTHHHH.BSS.HTTCHSHHH............................HHHHHHHHHG..SS....EE.--TTTHHHHHHHCCHHHHHHHHHHHHHHTTTTTTSTTEESSHHGGGGGGBEEEC.CTT....EE....HHHH............EEEHHHHHHHHHHHHHTGGGSSSHHHHHHHCHCHSEEEE--SEEE--....EEESSEEHHHHH...................................SEEEEE..SSTCEEEEEEGGGTEEEEEEESS CS
  PF00144.19  55 vtKtftaaavlqlveeGkldLddpVskylP............efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada..........................aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeae......gagglistardlarflglalegglllsaetlaqltaklssgttrpagiragl....glGwvladktga...................................pgtfghtGggygtyvfvdpeanlvvavltnr 311
                 +tK+ ta+a+lql ++Gkl+Ld+ ++  l             + + + ++ iT+r+Ll+H++Gl+++f  d + e  + +                          ++++++la lp+   pG+++ Ys   + +lg+++e v+g sl++++r +i++  + + t+++++ ++  ++a +y ++++++ ++p  +p++ +      g+ggl++t++d ++f+   l++g lls+++  +l++  ss++ rp+   a++    glG +  + +                                     pg+fg++G   g+ +fvdp+++ +v++ t+ 
  MMETSP0890-20130614|3852_1   1 MTKVATAVAILQLRDAGKLSLDTQIASILEewpeeqvfmhqgQIKIATTK-ITIRHLLQHSAGLSYGFWMDPVAEKYRERnlnlphpiaypslddptqrcpppsslHDFCKKLAPLPLLANPGERYHYSVSFD-VLGRIIECVSGLSLDEYFRIHIFDKVHANATHFYLQNPD--TVAPVYVKTNQGFLVAPHIDPPPNTppaapsGGGGLYTTIADWCAFA-NGLLDGTLLSQNSIDELRTPDSSNFIRPPDSLAARypalGLGVW--CIPPLdsahkededekkkeqkihenennycldvpiapimaPGAFGWPG-ASGSSFFVDPARKAAVVFTTHL 332
                 79***********************8888888899999999655566666.****************7777777776666************************************************97665.***********************************9999..888888889999999999999999999********************.666666666666666666666666666665555555*6666644..33333347****************************************.*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 1243.33
//
Query:       MMETSP0890-20130614|3853_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   12.3   0.1      0.075   12.3   0.1    1.9  2  PF10148.4 Schwannomin-interacting protein 1


Domain annotation for each model (and alignments):
>> PF10148.4  Schwannomin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.15   2.1e+03      83     108 ..      56      81 ..      30      87 .. 0.62
   2 ?   12.3   0.1   5.5e-06     0.075     170     233 ..     198     262 ..     178     266 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.15
   PF10148.4  83 skqssslsdrdtteeelesedseflr 108
                     ss+ d + +e +le  + e+ r
  MMETSP0890-20130614|3853_1  56 NSSESSHKDVQDAEHDLERYQKEYKR 81 
                 33445555555566666655555554 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 5.5e-06
   PF10148.4 170 lrdmslgql.qvivndlhsqieslneelvqlllirdelhteqdamlvdvedltrhaesqqkhmae 233
                 + ++ lg++ q ++n+  s+  +l ee  q    r +lh + +aml  v++ tr +e + kh+ e
  MMETSP0890-20130614|3853_1 198 VSEILLGDIfQNVTNQALSRDPALTEEDRQHYKNRLDLHHKAQAMLEFVQEETRVTEFDSKHVKE 262
                 5666777643999*************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       938  (0.0686074); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.44s 00:00:01.07 Elapsed: 00:00:00.75
# Mc/sec: 885.05
//
Query:       MMETSP0890-20130614|3856_1  [L=826]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-73  244.0   0.0    1.5e-72  243.2   0.0    1.4  1  PF12471.3  GTP cyclohydrolase N terminal
    2.4e-14   52.8   0.0    4.1e-14   52.0   0.0    1.3  1  PF00925.15 GTP cyclohydrolase II
    6.6e-06   25.6   0.1    1.2e-05   24.8   0.1    1.3  1  PF00697.17 N-(5'phosphoribosyl)anthranilate (PRA) isomerase
    0.00033   20.2   0.1    0.00091   18.8   0.0    1.7  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF12471.3  GTP cyclohydrolase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   0.0   4.3e-76   1.5e-72       4     194 ..     417     604 ..     414     605 .. 0.98

  Alignments for each domain:
  == domain 1    score: 243.2 bits;  conditional E-value: 4.3e-76
   PF12471.3   4 rivltsypeqsgvkplpleWgaadakeRGPvvasrskeelkkrnaiGahsGsYsvYralavaagaleadhrpdltntepavkigpqpsWsdpkkivslDpfGhlvaevfkeeleegvdirPtiavtkahlklpelkeavekgrlkvDgkivlkkngdvavtkvavepvWyLPgvaerfgvseeeLrralfe 194
                   +lt++ +  g +p  ++Wga++a  RGPv+a+  +++  +rnaiGah+G Ys+Yralava+g l+++  p l+ t+pav+igp+psW+dp+kiv++DpfGh +++ f+++l++g+dirPtiavt+ah++lpe k+a+++g l++D  i++k +g   vtk+a+epvWyLPgva+rfgvse  Lr +lf 
  MMETSP0890-20130614|3856_1 417 ATQLTTHDGGFGPSPARMKWGASSADLRGPVIAT--TRHGPQRNAIGAHAGGYSIYRALAVASGGLDTTRMPKLELTTPAVRIGPHPSWFDPTKIVTMDPFGHDIQSSFHAWLKKGYDIRPTIAVTRAHVELPECKDALRSGYLSADDLILAK-SGTSVVTKAAIEPVWYLPGVAARFGVSERLLRDSLFA 604
                 578*******************************..9999***********************************************************************************************************999998.99999*******************************7 PP

>> PF00925.15  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   1.2e-17   4.1e-14      40     168 ..     643     782 ..     633     783 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 1.2e-17
  PF00925.15  40 edepvlVRvHsecltgDvlgslrcdcgeqLdeal.eri..aee.grGvivylrqegrgiglleklraynlq.de.gldtveanlalgl......padeRdygigaqILrdlGvrki.rLltnnpekieaLegfglevvervp 168
                 ++ + ++RvH ec   Dv+ s  c+c++ L+ a+ e i  a++ g+G+++y r+egr+ g + k+  yn + ++ g d++++  +  +       +d+R   +   +L+ lG+++i + ++ +  k++a+++ g+e+ erv+
  MMETSP0890-20130614|3856_1 643 PNVELTCRVHDECNGSDVFFSDICTCRPYLAHAViECIkcAQRgGNGIVIYFRKEGRALGEVTKYLVYNMRkRQqGGDQASEYFR--CtedvagVKDTRFQALMPDVLHWLGITRIhKFISMSDMKYDAITQSGIEILERVE 782
                 6678899***********************9885233422333499***********************9976667777665433..33355558999999***************77999999****************97 PP

>> PF00697.17  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   3.4e-09   1.2e-05     118     179 ..       7      79 ..       2      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.4e-09
                 SEEEEE-----XXXXXXGGGGXXXXX.........XXEEEXXXXXXXSHHHHHT........XXXXXXEEXGGG CS
  PF00697.17 118 dllLlDsgqGGtGelldwslvkkllkske.....slkviLAGGltpenvseaik.......lvkpvgvDvsSGV 179
                   lL+D+ + G+G+ ld + + k++k++      s ++  AGGl+p+n++++++        ++ +++D+ SG+
  MMETSP0890-20130614|3856_1   7 VSLLFDA-SCGEGKELDLAWLVKAVKASIlsgipSGRIGFAGGLKPSNIQQVVQdlrqvygWTNGIWIDMESGI 79 
                 5689998.667**************8777999*99*******************99999888888999**9998 PP

>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07   0.00091      27     122 ..     197     289 ..     188     292 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.7e-07
                 ---E.EEEEE------HHHHHHHHHHHHHH-----SS-SEE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEE CS
  PF00156.22  27 kkdv.vvGiargGvplatelaraLglpldlvrvrkssapassetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgva 122
                 + +v +++i+r G+ +++ + +aL +  ++ +  ++    ++    +  +++   + +   + + ++i D v+at +T++a+i +L++ ga++++v+
  MMETSP0890-20130614|3856_1 197 DAKVaLIPILRAGFGMVEPMLDALPNAAVHPIGMYK----RGGAYDRPIEYYSRLPRSGGKDYDLAVILDPVIATSRTVHAVISKLQQWGARQIVVL 289
                 444559*************************99775....44444444444444455555666667888*********************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.16u 0.42s 00:00:01.57 Elapsed: 00:00:01.06
# Mc/sec: 1867.35
//
Query:       MMETSP0890-20130614|3858_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.7   2.6       0.15   11.7   1.3    2.0  1  PF09041.5 Aurora-A binding


Domain annotation for each model (and alignments):
>> PF09041.5  Aurora-A binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3   1.1e-05      0.15       5      28 ..     108     131 ..     104     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
   PF09041.5   5 qdsYsfDaPsdfiNFssldddDvh 28 
                  +s +f +P+d++NFss +d+D++
  MMETSP0890-20130614|3858_1 108 ASSAAFSIPNDILNFSSPHDNDTN 131
                 5677899**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       759  (0.0555149); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.79
# Mc/sec: 524.77
//
Query:       MMETSP0890-20130614|3863_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.2    5.5  10.0        9.4    5.2   7.0    1.2  1  PF02601.10 Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.0   0.00068       9.4     161     253 ..       7      92 ..       2     173 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00068
  PF02601.10 161 ralksklekekaklnllknrltlksrrkplskleqeeerleelkerleksleqllqskesqleklnaslaknnpdyklnkklekitllkneld 253
                 +++ ++l +++++l + +++l + +r+++   l++++++ +el +  +++++q +q ++ q +k   + +  n++ ++++ + ++t+  ++++
  MMETSP0890-20130614|3863_1   7 QQQPQELLQRQQQLLQRQRQLLQLQRQSQ---LQTQQQQPQELLQL-QRQSQQFFQLQQLQSQK---NEIIDNSEASYERPTLTLTQIRARQA 92 
                 44444444555555555444444443333...44444444444433.22244444444444444...22333333333333322222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1428  (0.104447); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.42s 00:00:01.25 Elapsed: 00:00:00.86
# Mc/sec: 1050.50
//
Query:       MMETSP0890-20130614|3867_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-26   88.7   5.4    3.1e-13   49.0   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    6.7e-24   83.5   0.1    2.1e-23   81.9   0.1    1.6  1  PF13424.1  Tetratricopeptide repeat
    1.2e-15   56.2   1.4    2.9e-07   29.6   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
      1e-14   52.9   0.9    1.5e-06   27.4   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
      1e-12   47.3   0.3    1.5e-12   46.8   0.2    1.2  1  PF13414.1  TPR repeat
    6.4e-12   44.3   2.0    3.8e-05   23.1   0.2    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.9e-08   34.6   0.5      3e-08   33.9   0.3    1.3  1  PF13432.1  Tetratricopeptide repeat
    3.1e-07   30.3   0.8      0.012   16.0   0.0    2.4  2  PF13428.1  Tetratricopeptide repeat
    4.2e-07   29.1   0.8      0.017   14.7   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    2.2e-06   27.3   3.3      0.006   16.5   0.3    3.1  3  PF13431.1  Tetratricopeptide repeat
    0.00059   19.7   0.1     0.0015   18.4   0.0    1.6  1  PF12688.2  Tetratrico peptide repeat
     0.0006   19.8   0.0        1.5    9.3   0.0    2.4  2  PF07721.9  Tetratricopeptide repeat
    0.00063   19.4   0.1      0.029   14.1   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
     0.0011   18.9   0.0      0.003   17.5   0.0    1.4  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0014   18.8   0.1       0.56   10.6   0.0    2.6  3  PF13174.1  Tetratricopeptide repeat
     0.0076   15.9   0.0        1.1    8.9   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.076   13.3   0.2        1.1    9.5   0.0    2.0  2  PF14357.1  Domain of unknown function (DUF4404)
        0.1   11.3   0.0        1.2    7.9   0.0    1.9  2  PF04910.9  Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.14   1.1e+02      36      42 .]       3       9 ..       1       9 [. 0.85
   2 !   49.0   0.0   4.1e-16   3.1e-13       1      42 []      10      51 ..      10      51 .. 0.98
   3 !   39.0   0.2   5.6e-13   4.3e-10       1      34 [.      52      85 ..      52      87 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.14
   PF13374.1 36 lGddHPd 42
                lG++HP+
  MMETSP0890-20130614|3867_1  3 LGPNHPQ 9 
                8*****5 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 4.1e-16
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ ln LA++l ++g+y+eA +l+e+a  ir++ lG++HPd
  MMETSP0890-20130614|3867_1 10 VATRLNSLAVLLDKQGKYDEAMPLYERAFRIREEKLGRNHPD 51
                799**************************************8 PP

  == domain 3    score: 39.0 bits;  conditional E-value: 5.6e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrr 34
                +a +lnnLA +l ++g+y+eA +l e+al ir++
  MMETSP0890-20130614|3867_1 52 VAQSLNNLAGLLENQGKYDEAMPLCERALRIREE 85
                799*****************************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   2.8e-26   2.1e-23       1      78 []       7      85 ..       7      85 .. 0.98

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 2.8e-26
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                hp++at ln la +l ++g+ydeA  lye+a  +  ++lg++hpd+a +lnnla l++ +g+ydeA ++ e+Al+i+e+
  MMETSP0890-20130614|3867_1  7 HPQVATRLNSLAVLLDKQGKYDEAMPLYERAFRIrEEKLGRNHPDVAQSLNNLAGLLENQGKYDEAMPLCERALRIREE 85
                899*******************************9999**************************************985 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.1e-09   3.9e-06       4      32 ..      14      42 ..      11      44 .. 0.91
   2 !   29.6   0.2   3.8e-10   2.9e-07       1      32 [.      53      84 ..      53      86 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5.1e-09
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnP 32
                l+ l++++ k+gkydeA   ye+A ++++
  MMETSP0890-20130614|3867_1 14 LNSLAVLLDKQGKYDEAMPLYERAFRIRE 42
                799*********************98875 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 3.8e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                a++l+nl+ ++ ++gkydeA   +e+AL++++
  MMETSP0890-20130614|3867_1 53 AQSLNNLAGLLENQGKYDEAMPLCERALRIRE 84
                789**************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.6e-08   1.2e-05       2      32 ..      14      44 ..      14      48 .. 0.82
   2 !   27.4   0.1     2e-09   1.5e-06       1      31 [.      55      85 ..      55      88 .] 0.90

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.6e-08
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
                l+ La+l  ++g+y++A  lyera +++++ 
  MMETSP0890-20130614|3867_1 14 LNSLAVLLDKQGKYDEAMPLYERAFRIREEK 44
                789********************55555544 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 2e-09
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                +l+nLa l +++g+y++A  l+eraL+++++
  MMETSP0890-20130614|3867_1 55 SLNNLAGLLENQGKYDEAMPLCERALRIREE 85
                79**********************8877765 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.2   1.9e-15   1.5e-12       2      68 ..      10      83 ..       9      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 1.9e-15
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68
                +A  l+ l+  l k+g+ydeA  +ye+A +++        p+ a+ ++nlA +++++g +y+eA+  +e+Al+++
  MMETSP0890-20130614|3867_1 10 VATRLNSLAVLLDKQGKYDEAMPLYERAFRIReeklgrnhPDVAQSLNNLAGLLENQG-KYDEAMPLCERALRIR 83
                577899************************966666766699999*************.6************986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1     2e-07   0.00015       4      31 ..      14      41 ..      11      44 .. 0.89
   2 !   23.1   0.2     5e-08   3.8e-05       1      31 [.      53      83 ..      53      86 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2e-07
                HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleld 31
                l+ l+ ++ k+g+y+eA  ++e+A ++ 
  MMETSP0890-20130614|3867_1 14 LNSLAVLLDKQGKYDEAMPLYERAFRIR 41
                7889********************9885 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 5e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a+ l+nl+ +++++g+y+eA  ++e+Al++ 
  MMETSP0890-20130614|3867_1 53 AQSLNNLAGLLENQGKYDEAMPLCERALRIR 83
                5789************************986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.3     4e-11     3e-08       2      60 ..      16      82 ..      15      85 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 4e-11
   PF13432.1  2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                +lA +l ++G+ydeA +++e+a +          P+ a+ l +la +l  +g++deA  l ++al++
  MMETSP0890-20130614|3867_1 16 SLAVLLDKQGKYDEAMPLYERAFRIReeklgrnhPDVAQSLNNLAGLLENQGKYDEAMPLCERALRI 82
                5899999************88887777*************************************975 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   0.00011     0.082       6      30 ..      16      40 ..      10      60 .. 0.76
   2 !   16.0   0.0   1.6e-05     0.012       4      30 ..      56      82 ..      52      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00011
   PF13428.1  6 alarallalGdpdeAiallrralal 30
                 la +l  +G +deA+ l++ra + 
  MMETSP0890-20130614|3867_1 16 SLAVLLDKQGKYDEAMPLYERAFRI 40
                6899999***************763 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.6e-05
   PF13428.1  4 llalarallalGdpdeAiallrralal 30
                l  la +l+++G +deA+ l++ral+ 
  MMETSP0890-20130614|3867_1 56 LNNLAGLLENQGKYDEAMPLCERALRI 82
                5679********************986 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   6.7e-05     0.051       4      31 ..      14      41 ..      11      44 .. 0.88
   2 !   14.7   0.1   2.2e-05     0.017       2      31 ..      54      83 ..      53      86 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.7e-05
                TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                ++ l+ ++ + G+yd+A+  +e+a  + 
  MMETSP0890-20130614|3867_1 14 LNSLAVLLDKQGKYDEAMPLYERAFRIR 41
                56789999****************9875 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.2e-05
                --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
                ++++nl+ ++++ G+yd+A+   e+al + 
  MMETSP0890-20130614|3867_1 54 QSLNNLAGLLENQGKYDEAMPLCERALRIR 83
                7899**********************9986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00079       0.6      16      32 ..      14      30 ..       3      31 .. 0.88
   2 !   16.5   0.3   7.9e-06     0.006       8      32 ..      48      72 ..      33      73 .. 0.93
   3 ?   -1.6   0.0       5.1   3.9e+03       1       8 [.      75      82 ..      75      85 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00079
   PF13431.1 16 ynnLAelllnnGdleeA 32
                +n LA+ll ++G+++eA
  MMETSP0890-20130614|3867_1 14 LNSLAVLLDKQGKYDEA 30
                579************99 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 7.9e-06
   PF13431.1  8 ldPnnadaynnLAelllnnGdleeA 32
                ++P+ a+++nnLA ll n+G+++eA
  MMETSP0890-20130614|3867_1 48 NHPDVAQSLNNLAGLLENQGKYDEA 72
                68999******************99 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 5.1
   PF13431.1  1 lyekalel 8 
                l+e+al++
  MMETSP0890-20130614|3867_1 75 LCERALRI 82
                69999986 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     2e-06    0.0015       8      66 ..      18      81 ..      11      87 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2e-06
   PF12688.2  8 agarDstGeeakAvplYrrA.....laaGLagarrrratiqlaSsLRnlGrveeslalleaela 66
                a   D  G+ ++A+plY+rA     ++ G +     +    la  L n G+ +e++ l e++l+
  MMETSP0890-20130614|3867_1 18 AVLLDKQGKYDEAMPLYERAfrireEKLGRNHPDVAQSLNNLAGLLENQGKYDEAMPLCERALR 81
                6678***************944432345777888889999999999999*******99999876 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002       1.5       6      26 .]      16      36 ..      11      36 .. 0.90
   2 !    8.5   0.0    0.0036       2.7       2      26 .]      54      78 ..      53      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.002
                --HHHHHH-------HHHHHT CS
   PF07721.9  6 aLArallalGdldeAraller 26
                 LA +l  +G +deA  l er
  MMETSP0890-20130614|3867_1 16 SLAVLLDKQGKYDEAMPLYER 36
                59*************999887 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0036
                HHH---HHHHHH-------HHHHHT CS
   PF07721.9  2 rallaLArallalGdldeAraller 26
                + l +LA +l  +G +deA  l er
  MMETSP0890-20130614|3867_1 54 QSLNNLAGLLENQGKYDEAMPLCER 78
                56789**************999886 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.8e-05     0.029       5      32 ..      11      38 ..       9      43 .. 0.87
   2 ?    3.6   0.0      0.07        53      15      32 ..      63      80 ..      53      85 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF04212.13  5 AlelikkAveaDeagkyeeAlelYkeAl 32
                A  l + Av  D++gky+eA  lY+ A 
  MMETSP0890-20130614|3867_1 11 ATRLNSLAVLLDKQGKYDEAMPLYERAF 38
                56677889****************9996 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.07
                HHHTT-HHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAl 32
                 +++gky+eA  l + Al
  MMETSP0890-20130614|3867_1 63 LENQGKYDEAMPLCERAL 80
                6999*****987665555 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.9e-06     0.003       2      52 ..      24      81 ..      23      87 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.9e-06
                TT-HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH---HHHHHHHHHC.TS CS
   PF12895.2  2 qhnyknAlflaekllaespk....dp..edaylyalAlclylngeykrAyellrk.le 52
                q+ y++A+ l+e+++    +    ++   + +l +lA  l ++g+y++A+ l+++ l 
  MMETSP0890-20130614|3867_1 24 QGKYDEAMPLYERAFRIREEklgrNHpdVAQSLNNLAGLLENQGKYDEAMPLCERaLR 81
                889**************8877775223344477779*************999977544 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00074      0.56       6      26 ..      17      37 ..      16      40 .. 0.91
   2 ?   -2.1   0.0       8.6   6.5e+03      24      32 ..      43      51 ..      43      51 .. 0.79
   3 ?    5.7   0.0     0.028        22       6      27 ..      59      80 ..      55      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00074
                HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerl 26
                la +++k+g++deA+ ++er 
  MMETSP0890-20130614|3867_1 17 LAVLLDKQGKYDEAMPLYERA 37
                7999***************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 8.6
                HHHHHH-TT CS
   PF13174.1 24 erlikeyPd 32
                e+l +++Pd
  MMETSP0890-20130614|3867_1 43 EKLGRNHPD 51
                578899997 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.028
                HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerli 27
                la +++++g++deA+ + er +
  MMETSP0890-20130614|3867_1 59 LAGLLENQGKYDEAMPLCERAL 80
                666788899*****99888876 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0015       1.1      13      35 ..      23      43 ..      14      44 .. 0.80
   2 ?    5.1   0.0     0.024        18      13      21 ..      65      73 ..      62      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0015
                HTT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7 13 nkkkyqeArelfsYallaildke 35
                 ++ky+eA  l  Y+ ++ +++e
  MMETSP0890-20130614|3867_1 23 KQGKYDEAMPL--YERAFRIREE 43
                59*********..8888777765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.024
                HTT-HHHHH CS
   PF07720.7 13 nkkkyqeAr 21
                n++ky+eA 
  MMETSP0890-20130614|3867_1 65 NQGKYDEAM 73
                89*****95 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.21   1.6e+02      65      82 ..       6      23 ..       4      26 .. 0.86
   2 ?    9.5   0.0    0.0015       1.1      51      84 ..      33      67 ..      18      67 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.21
   PF14357.1 65 eHPklagtlrnildsLan 82
                +HP++a  l++++  L +
  MMETSP0890-20130614|3867_1  6 NHPQVATRLNSLAVLLDK 23
                6*********99999876 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0015
   PF14357.1 51 laerlne.averFeaeHPklagtlrnildsLanmG 84
                l er  +   e+  ++HP++a+ l+n++  L n G
  MMETSP0890-20130614|3867_1 33 LYERAFRiREEKLGRNHPDVAQSLNNLAGLLENQG 67
                555544446788899*************9999865 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.086        65      36      68 ..       7      39 ..       3      52 .. 0.83
   2 ?    7.9   0.0    0.0016       1.2      36      69 ..      49      82 ..      43      87 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.086
   PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLf 68
                +P     L  l+ ++ +qg++ +A+ l era  
  MMETSP0890-20130614|3867_1  7 HPQVATRLNSLAVLLDKQGKYDEAMPLYERAFR 39
                67777778999999****************975 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0016
   PF04910.9 36 yPYHvdtLlqlsevyreqgdfevAndlieraLfi 69
                +P    +L +l+ ++++qg++ +A+ l+eraL i
  MMETSP0890-20130614|3867_1 49 HPDVAQSLNNLAGLLENQGKYDEAMPLCERALRI 82
                55567899***********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.76
# Mc/sec: 277.47
//
Query:       MMETSP0890-20130614|3865_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-43  144.7   0.0    1.1e-42  144.6   0.0    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   8.1e-47   1.1e-42       1     138 [.       8     150 ..       8     152 .. 0.95

  Alignments for each domain:
  == domain 1    score: 144.6 bits;  conditional E-value: 8.1e-47
                 HHHHHHHHHHHS-TTCEEEEEEET....TECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT.--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevved....snllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeek.WspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                 rl++e k++++++p g+ a++  +    ++ll+w++ i g++gt +e+g+++++++f e+YP kPPk+kf+ ++fHPnv+++G+icl+iL+e++ W+pa+t+++ Ll+iq ll++pnp+sp++  a+kl+ +++++y++++++
  MMETSP0890-20130614|3865_1   8 RLAEERKNWRRDHPFGFWARPALKpdgtTSLLQWDCGIPGKKGTDWENGVYRVRMEFTEDYPSKPPKCKFTPPLFHPNVYPSGTICLSILNEDQdWRPAITIKQMLLGIQDLLDTPNPRSPAQDAAYKLFINDKNAYSQRIRQ 150
                 7999*************999988555789**************************************************************6656********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 532.52
//
Query:       MMETSP0890-20130614|3876_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-10   39.2   0.0    4.5e-10   39.2   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    9.4e-05   21.9   0.0    0.00011   21.7   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   6.6e-14   4.5e-10      26      63 ..       2      39 ..       1      40 [] 0.65

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 6.6e-14
   PF13306.1 26 IgeyaFsncsslksitlpsslteigeyaFsncssltsi 63
                Ig +aF +c+sl+++tlp  lt+i+e aF +c+slt++
  MMETSP0890-20130614|3876_1  2 IGHSAFLGCTSLTRVTLPAGLTTIEEGAFGGCTSLTQL 39
                66777777777777777777777777777777777665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.6e-08   0.00011      16      54 ..       2      39 ..       1      40 [] 0.92

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.6e-08
   PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreL 54
                i+++aF g+++L+   L    l++i+++af g++sL++L
  MMETSP0890-20130614|3876_1  2 IGHSAFLGCTSLTRVTLP-AGLTTIEEGAFGGCTSLTQL 39
                7899999**********9.999**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        88  (0.00643651); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.32s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 159.76
//
Query:       MMETSP0890-20130614|3878_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-36  122.7   2.6    3.1e-15   55.5   0.0    3.1  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0     5e-14   6.8e-10       5      91 ..      10      96 ..       6     100 .. 0.91
   2 !   27.8   0.1   9.8e-11   1.3e-06       6      94 ..     108     209 ..     104     211 .. 0.93
   3 !   55.5   0.0   2.3e-19   3.1e-15       2      92 ..     229     313 ..     228     316 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5e-14
                HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---.GGGG-.--HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22  5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGi.rglyr.Gllpnllrvvpaaaikfvtyetlkkl 91
                + +s++++a+Ag +++++ +Pld+vK+r q   +  ++   +i++  + i+ +eG+  gl+  G+l+n +++ ++++ + ++y ++++l
  MMETSP0890-20130614|3878_1 10 FGASCASAAFAGGVTVAIFNPLDTVKVRYQ--VTPMETAPISIFKFGRDIIAKEGLlAGLWApGCLANGFGIGMSSMGRVGLYPFIRDL 96
                678999************************..88888999***************87899966********************999876 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 9.8e-11
                 HHHHH----HHHCCHHHCHHHHHHHHHHH................-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlq................ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                    +++G++Agai+  +  P+  vKt  q                k+ + a  + ++++++l+++  +   r+l+rG ++ ++r ++ +a + v y+ +k++ +k
  MMETSP0890-20130614|3878_1 108 GTMFTSGLLAGAIGYWCSSPVYQVKTLKQaeagvldtngkllsgsKAGQLAVYHGRSLISCLGTLASQ---RALFRGSSALVVRGALLSAGNCVGYDGCKTYARK 209
                 56799**************************************988888899999**********999...9****************************99877 PP

  == domain 3    score: 55.5 bits;  conditional E-value: 2.3e-19
                 HHHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   2 klsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 k+s++ ++la++++++++++  tP dv+ tr q      s+++ ++  +l++i+++eG++glyrG+lp ++r +p  ++ + + e+l++ll
  MMETSP0890-20130614|3878_1 229 KESPYVHILASIVGAFVGTVTATPADVLMTRYQ------SQPFPNLTACLRHIIQTEGPLGLYRGFLPFFVRLAPVFVVSLPATEQLRRLL 313
                 678999***************************......999**********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1190.69
//
Query:       MMETSP0890-20130614|3887_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0021   17.7   2.3     0.0032   17.1   0.6    1.9  2  PF11980.3  Domain of unknown function (DUF3481)
  ------ inclusion threshold ------
       0.01   15.3   0.1      0.015   14.7   0.0    1.2  1  PF06365.7  CD34/Podocalyxin family
      0.029   13.4   0.5       0.04   12.9   0.3    1.2  1  PF12768.2  Cortical protein marker for cell polarity
      0.042   11.9   0.0      0.062   11.3   0.0    1.2  1  PF05510.8  Sarcoglycan alpha/epsilon
      0.056   12.9   1.2       0.15   11.5   0.8    1.7  1  PF11857.3  Domain of unknown function (DUF3377)
        1.4    8.6   7.6        0.5   10.0   3.4    1.6  2  PF02687.16 FtsX-like permease family


Domain annotation for each model (and alignments):
>> PF11980.3  Domain of unknown function (DUF3481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.63   1.4e+03      23      52 ..     118     146 ..     100     158 .. 0.65
   2 !   17.1   0.6   1.4e-06    0.0032      19      64 ..     158     204 ..     155     221 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.63
   PF11980.3  23 sgllvllvavclgvvLycaryhnatkkrsl 52 
                 sg+l ++  v  ++ Ly a +  a +++s 
  MMETSP0890-20130614|3887_1 118 SGVLAIFSGVI-VLELYDATILEASSSSSS 146
                 55555555555.555666655555555554 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.4e-06
   PF11980.3  19 viamsgllvllvavclgvvLycaryhnatkk.rs.lsvlyknenYndp 64 
                 +i++  + ++l   cl++v++c r + + +k  + +  l +n+nYn  
  MMETSP0890-20130614|3887_1 158 IIIAIVIAIVLILCCLTLVIFCCRQYFGSNKqVQnHVEL-HNQNYNLQ 204
                 444445566667778877776666666555514436666.*****955 PP

>> PF06365.7  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.8e-06     0.015      76     139 ..     132     195 ..     127     209 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.8e-06
   PF06365.7  76 Leelgiqdlkeqdssskeekedk.lpllialvtlgaillLiialltlYclhqRrsqkkkqqrlgE 139
                 L ++ i + +  +sss  +++   +p++ia+v+   +l+L  + l  +c+ q +  +k+ q + E
  MMETSP0890-20130614|3887_1 132 LYDATILEASSSSSSSSGKSTFSgFPIIIAIVIAI-VLILCCLTLVIFCCRQYFGSNKQVQNHVE 195
                 55666767777666666666666899****99766.66666666678999999988888888766 PP

>> PF12768.2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.8e-05      0.04     189     275 ..      80     202 ..      72     206 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.8e-05
   PF12768.2 189 iPylltssssgesgsissifle.....................................ksnsfssskdlkklsrgiVVlIsLaiAlgtvfLlgllgiilalirrkrqkysyapqkqridedem 275
                 i y++t++s +++  + s +++                                     + +s+sss+++k    g+ ++I++ iA+ +++    l i +++  + ++k++++++ + ++++ +
  MMETSP0890-20130614|3887_1  80 IGYIVTTTSPEQAAAVVSALTDltfaemeaaistaaedsgvlaifsgvivlelydatilEASSSSSSSSGKSTFSGFPIIIAIVIAIVLILCCLTLVIFCCRQYFGSNKQVQNHV-ELHNQNYN 202
                 568888877777777777777788888888888888888888888888888888888884555555566899999*999999999998876665555555555555556655544.35555555 PP

>> PF05510.8  Sarcoglycan alpha/epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.7e-05     0.062     301     348 ..     157     197 ..     140     220 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
   PF05510.8 301 vitlaipllvalllvllLalilcfqreglkkrdsrtsdsqlvhhssis 348
                  i +ai+ +++l+l++ L+l++++ r+ +       s+ q+++h + +
  MMETSP0890-20130614|3887_1 157 PIIIAIVIAIVLILCC-LTLVIFCCRQYF------GSNKQVQNHVELH 197
                 4557888888888766.566666666666......4444444444444 PP

>> PF11857.3  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   6.6e-05      0.15      31      49 ..     159     177 ..     151     195 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.6e-05
   PF11857.3  31 avaVviPlvLalCiLvlvy 49 
                 ++a+vi +vL lC L+lv+
  MMETSP0890-20130614|3887_1 159 IIAIVIAIVLILCCLTLVI 177
                 79**************985 PP

>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   3.5e+03      57      65 ..      76      84 ..      55      98 .. 0.65
   2 ?   10.0   3.4   0.00022       0.5      55     113 ..     119     177 ..     107     181 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.6
  PF02687.16 57 iglllGlll 65
                +++++G+++
  MMETSP0890-20130614|3887_1 76 VSIFIGYIV 84
                344444443 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00022
  PF02687.16  55 gliglllGlllglllaqllsqallkfnssslpisldpitlllilllilllallaallpa 113
                 g+++++ G+++  l    +  a ++ +sss + ++++  ++++++++++l+l +  l++
  MMETSP0890-20130614|3887_1 119 GVLAIFSGVIVLELYDATILEASSSSSSSSGKSTFSGFPIIIAIVIAIVLILCCLTLVI 177
                 56777778777777777777777779999999999999999999988888887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1030  (0.0753365); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        99  (0.00724108); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.44s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 918.60
//
Query:       MMETSP0890-20130614|3891_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-28   96.9   0.1    6.2e-28   96.4   0.1    1.2  1  PF00085.15 Thioredoxin
    1.5e-09   37.9   0.1    7.2e-09   35.7   0.1    1.9  1  PF13098.1  Thioredoxin-like domain
    6.7e-09   35.6   0.1    1.8e-08   34.3   0.1    1.7  1  PF13905.1  Thioredoxin-like
    5.6e-05   22.7   0.0    8.7e-05   22.0   0.0    1.3  1  PF00578.16 AhpC/TSA family
    5.7e-05   22.9   0.1    9.1e-05   22.3   0.1    1.3  1  PF13899.1  Thioredoxin-like
    8.2e-05   22.0   0.3    0.00015   21.2   0.2    1.5  1  PF08534.5  Redoxin
     0.0015   17.9   0.0     0.0022   17.4   0.0    1.2  1  PF02966.11 Mitosis protein DIM1
  ------ inclusion threshold ------
      0.043   13.6   0.0      0.073   12.8   0.0    1.4  1  PF07449.6  Hydrogenase-1 expression protein HyaE
      0.081   12.5   0.0       0.13   11.8   0.0    1.3  1  PF13848.1  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.1   4.1e-31   6.2e-28       6     102 ..     132     226 ..     127     228 .. 0.96

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 4.1e-31
                 SHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
  PF00085.15   6 tkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                 t+++f++++ + +klv+ +f+A+wCG+C+ ++P++++++e++++k  ++ vdvd+ k +a++y v+++Pt+++f+ngk++++++ga +++kl+++++
  MMETSP0890-20130614|3891_1 132 TQAEFNRHIGS-KKLVVADFWASWCGPCQTMKPKFAAISERHAKKCNFLAVDVDAAKPIAQKYAVSSMPTFVFFRNGKEIDRFSGA-DENKLESMIS 226
                 7899******9.**************************************************************************.9999999886 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   4.8e-12   7.2e-09       4     102 ..     142     216 ..     139     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 4.8e-12
   PF13098.1   4 ngkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldgeGklvarlpGy 102
                  +k v+++f++ +C+ C+ ++++     ++++  ++k ++++v++d +                    k +++k+ v++ Pt+vf+ ++Gk++ r++G+
  MMETSP0890-20130614|3891_1 142 SKKLVVADFWASWCGPCQTMKPKFA---AISERHAKKCNFLAVDVDAA--------------------KPIAQKYAVSSMPTFVFF-RNGKEIDRFSGA 216
                 6899******************998...69999999**********44....................359***************.59*******997 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.2e-11   1.8e-08       1      66 [.     143     205 ..     142     215 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.2e-11
   PF13905.1   1 gkivllyfaaswcppckaftpelkelyeklkaskdkveivyVsldrdeeefkkylkknkkpwlavp 66 
                 +k+v+ +f+aswc+pc+   p+  ++ e++    +k+++++V +d  ++  +ky    ++++++++
  MMETSP0890-20130614|3891_1 143 KKLVVADFWASWCGPCQTMKPKFAAISERHA---KKCNFLAVDVDAAKPIAQKYAVSSMPTFVFFR 205
                 599***************************9...8**********999988888887767777654 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.7e-08   8.7e-05      19      73 ..     135     189 ..     114     212 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 5.7e-08
  PF00578.16  19 slsdl..kgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspesh 73 
                 +++ +  ++k vv  f+++ +c +C+t  p++a+  e+ + k++++++v vd ++ +
  MMETSP0890-20130614|3891_1 135 EFNRHigSKKLVVADFWAS-WCGPCQTMKPKFAAISERHA-KKCNFLAVDVDAAKPI 189
                 555554455889999****.**************998876.68*********98843 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1     6e-08   9.1e-05      15      81 ..     141     205 ..     133     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6e-08
   PF13899.1  15 eegkpllvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanleldrqg....vPvvvfld 81 
                  ++k +  +f a+wc++Cq+++  +++  e     a+k+ +l vdv+  ++   +++++     P++vf+ 
  MMETSP0890-20130614|3891_1 141 GSKKLVVADFWASWCGPCQTMKPKFAAISER---HAKKCNFLAVDVDAAKP---IAQKYavssMPTFVFFR 205
                 56788888*****************777555...459**********9999...44444455699999985 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   9.9e-08   0.00015      28      80 ..     142     195 ..     118     219 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.9e-08
                 TSEEEE.E---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HH..HHHHH CS
   PF08534.5  28 gkkvvl.vfvpgafcptCsaehpyleklaklakekgvdvvavvaqndaf..vkeaw 80 
                  kk+v+  f+++ +c++C++  p ++ ++++ ++k+ +++av ++  ++  +k a+
  MMETSP0890-20130614|3891_1 142 SKKLVVaDFWAS-WCGPCQTMKPKFAAISER-HAKKCNFLAVDVDAAKPiaQKYAV 195
                 45655548****.******************.9999******99998887444444 PP

>> PF02966.11  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0022      19     103 ..     142     225 ..     127     228 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.4e-06
  PF02966.11  19 eerlvviRFGrdedaeClklDelLakiaekvknfaviylvdidevpdfnkmyeledpvtvlffyrnkhmkvDlgtgdnnKlnfvl 103
                 +++lvv  F  ++   C ++    a i+e+  +  ++  vd+d  +   + y +++  t +ff ++k +   ++ +d+nKl  ++
  MMETSP0890-20130614|3891_1 142 SKKLVVADFWASWCGPCQTMKPKFAAISERHAKKCNFLAVDVDAAKPIAQKYAVSSMPTFVFFRNGKEID-RFSGADENKLESMI 225
                 689****************************************************988888886777665.47888999998877 PP

>> PF07449.6  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-05     0.073      63      95 ..     178     210 ..     166     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-05
   PF07449.6  63 aavvareqeealaerfgvlrlPsllflrdgeyl 95 
                   +v  +  + +a+++ v+ +P+++f+r+g+ +
  MMETSP0890-20130614|3891_1 178 FLAVDVDAAKPIAQKYAVSSMPTFVFFRNGKEI 210
                 56667778889******************9876 PP

>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.8e-05      0.13       7      71 ..     160     225 ..     157     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.8e-05
                 THHHHHHHHHHH--.--B-----...-HHHHHHTT---.--EEEEETTTTEEEEE-HHT--HHHHHHHH CS
   PF13848.1   7 elkeiFekaakelkgdvtfgvts...ekevakklgike.pkvllfrkfdekrvkydgekltvddlkkfi 71 
                 ++k +F+++ ++  +++ f +++    k +a+k+++++ p+ ++fr+  ++   ++g+  + ++l++ i
  MMETSP0890-20130614|3891_1 160 TMKPKFAAISERHAKKCNFLAVDvdaAKPIAQKYAVSSmPTFVFFRN-GKEIDRFSGA--DENKLESMI 225
                 56678999999999999999998544444899999999999999999.6668888886..777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 914.61
//
Query:       MMETSP0890-20130614|3889_1  [L=913]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.0   0.6       0.29   10.6   0.1    1.9  2  PF09976.4 Uncharacterized protein conserved in bacteria (DUF2133)


Domain annotation for each model (and alignments):
>> PF09976.4  Uncharacterized protein conserved in bacteria (DUF2133)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.53   7.2e+03      10      15 ..     310     315 ..     310     323 .. 0.88
   2 ?   10.6   0.1   2.1e-05      0.29      16      42 ..     868     894 ..     866     894 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.53
   PF09976.4  10 WkryGk 15 
                 W+++G 
  MMETSP0890-20130614|3889_1 310 WRKNGA 315
                 ****95 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.1e-05
   PF09976.4  16 wiivgavlalagvaGwrgwqkyqasqa 42 
                 +++  ++++++ va++ gw+++  +qa
  MMETSP0890-20130614|3889_1 868 PVTFSIIALIGVVAAYFGWSSANKNQA 894
                 57888999************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.38s 00:00:01.61 Elapsed: 00:00:00.89
# Mc/sec: 2458.29
//
Query:       MMETSP0890-20130614|3899_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-13   47.8   0.1    7.6e-12   44.5   0.0    1.9  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.013   14.8   0.1      0.013   14.8   0.0    1.1  1  PF13360.1  PQQ-like domain
      0.052   11.6   0.0      0.052   11.6   0.0    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.7e-15   7.6e-12       1      39 []       6      44 ..       6      44 .. 0.97
   2 ?    1.7   0.0     0.052   2.3e+02       2      19 ..      49      65 ..      48      66 .] 0.75

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.7e-15
                TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                g++k+tl+gH++ V++ +fs dg++++s+S D+t r+Wd
  MMETSP0890-20130614|3899_1  6 GQLKRTLEGHSDDVEDASFSADGTRVISASTDRTARVWD 44
                6899**********************************9 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.052
                EEEEEEESSSSSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvaf 19
                +++++++   + V++++f
  MMETSP0890-20130614|3899_1 49 KVLSEFKFN-DYVRSCDF 65
                566667777.99****99 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.8e-06     0.013      34      66 ..      26      58 ..       2      63 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.8e-06
   PF13360.1 34 ldggtlfvasakgrlvaldaatGkvlWsksleg 66
                 dg ++++as++++   +da+tGkvl +++++ 
  MMETSP0890-20130614|3899_1 26 ADGTRVISASTDRTARVWDAQTGKVLSEFKFND 58
                4999***********************999875 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.1e-05     0.052     230     254 ..      27      51 ..       6      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   PF11715.3 230 gqtfvftlsrDgkLRvWnletgqcl 254
                 + t v++ s D++ RvW+  tg+ l
  MMETSP0890-20130614|3899_1  27 DGTRVISASTDRTARVWDAQTGKVL 51 
                 556678****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.30s 00:00:00.61 Elapsed: 00:00:00.63
# Mc/sec: 251.05
//
Query:       MMETSP0890-20130614|3894_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1252  (0.091574); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:01.00
# Mc/sec: 1416.25
//
Query:       MMETSP0890-20130614|3909_1  [L=858]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-10   37.3   4.9    1.5e-09   36.6   3.4    1.4  1  PF00641.13 Zn-finger in Ran binding protein and others


Domain annotation for each model (and alignments):
>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   3.4   1.1e-13   1.5e-09       2      29 ..     313     340 ..     312     341 .. 0.95

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-13
  PF00641.13   2 egdWdCskClvqNfawstkCvaCqapkp 29 
                  g+W+C  Clv+N+a++ kCv+C+ap+p
  MMETSP0890-20130614|3909_1 313 PGSWKCEQCLVRNEAKAEKCVSCEAPRP 340
                 69*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:01.49
# Mc/sec: 1379.92
//
Query:       MMETSP0890-20130614|3901_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23   11.3   0.0       0.23   11.3   0.0    2.2  2  PF03827.8 Orexin receptor type 2


Domain annotation for each model (and alignments):
>> PF03827.8  Orexin receptor type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   2.8         1   1.4e+04      15      26 ..     405     416 ..     394     420 .. 0.61
   2 ?   11.3   0.0   1.7e-05      0.23      27      56 ..     591     620 ..     582     623 .. 0.83

  Alignments for each domain:
  == domain 1    score: -6.4 bits;  conditional E-value: 1
   PF03827.8  15 rtstesrksltt 26 
                   st  rk l t
  MMETSP0890-20130614|3901_1 405 TKSTTKRKKLDT 416
                 346666777666 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 1.7e-05
   PF03827.8  27 qisnfdnvsklseqvvltsistlPaanGaG 56 
                  +snfdn+++l e+v++   s  P  + aG
  MMETSP0890-20130614|3901_1 591 DVSNFDNLTRLKEEVAIYYWSKEPFLDSAG 620
                 69**************98888877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.99
# Mc/sec: 1544.32
//
Query:       MMETSP0890-20130614|3928_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-17   60.7   0.7    8.1e-13   47.6   0.1    2.8  2  PF00400.27 WD domain, G-beta repeat
    9.1e-06   25.1   0.1       0.04   13.4   0.0    2.2  2  PF07676.7  WD40-like Beta Propeller Repeat
     0.0027   15.8   0.1     0.0027   15.8   0.1    1.1  1  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.04   13.2   0.1        4.3    6.7   0.0    2.2  2  PF02495.12 7kD viral coat protein
        0.1   12.2   0.0          1    8.9   0.0    1.9  2  PF08662.6  Eukaryotic translation initiation factor eIF2A
        0.3   10.7   2.7         22    4.7   0.0    3.0  3  PF12021.3  Protein of unknown function (DUF3509)
        2.3    7.4   5.2        6.9    5.9   0.0    2.7  3  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   4.2e-16   8.1e-13       2      39 .]       8      45 ..       7      45 .. 0.95
   2 !   10.6   0.0   0.00018      0.36      13      27 ..      62      76 .]      49      76 .] 0.85

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 4.2e-16
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++ tlrgHt +V +++fspdg+++++ S Dgt+r+W+
  MMETSP0890-20130614|3928_1  8 RLLLTLRGHTLSVLDCDFSPDGTRVVTTSNDGTVRVWN 45
                56889********************************7 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00018
                SEEEEEEESSSTEEE CS
  PF00400.27 13 pVtcvafspdgplla 27
                 V+++afspdg++++
  MMETSP0890-20130614|3928_1 62 VVESCAFSPDGKRIV 76
                59*********9986 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00031      0.61      16      30 ..      25      39 ..      22      44 .. 0.84
   2 !   13.4   0.0   2.1e-05      0.04      13      24 ..      65      76 .]      64      76 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00031
                E-----EEEEEE-BT CS
   PF07676.7 16 wSPDGkkivFtSnRg 30
                +SPDG++ v tSn g
  MMETSP0890-20130614|3928_1 25 FSPDGTRVVTTSNDG 39
                9********999955 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.1e-05
                EEEE-----EEE CS
   PF07676.7 13 ePawSPDGkkiv 24
                + a+SPDGk+iv
  MMETSP0890-20130614|3928_1 65 SCAFSPDGKRIV 76
                579********8 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.4e-06    0.0027     224     261 ..      26      56 ..       2      74 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
   PF11715.3 224 sssevegqtfvftlsrDgkLRvWnletgqclrttdil..e 261
                 s+    + t v+t s Dg++RvWn e+g++l     l  +
  MMETSP0890-20130614|3928_1  26 SP----DGTRVVTTSNDGTVRVWNAENGTLL-----LvlR 56 
                 44....4556779****************92.....2222 PP

>> PF02495.12  7kD viral coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0022       4.3      33      52 ..      15      34 ..       7      37 .. 0.88
   2 ?    4.6   0.0      0.01        20      35      46 ..      60      71 ..      58      76 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0022
  PF02495.12 33 GesvtitgCeitpefiealk 52
                G+   +  C ++p+  +++ 
  MMETSP0890-20130614|3928_1 15 GHTLSVLDCDFSPDGTRVVT 34
                99************999985 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.01
  PF02495.12 35 svtitgCeitpe 46
                sv++  C ++p+
  MMETSP0890-20130614|3928_1 60 SVVVESCAFSPD 71
                9**********8 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00053         1     145     171 ..      19      45 ..       1      52 [. 0.71
   2 ?    5.0   0.0     0.008        16     124     158 ..      38      75 ..      36      76 .] 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00053
   PF08662.6 145 natlvewspdgryvlTattsprlrvdn 171
                    ++++spdg+ v+T +    +rv n
  MMETSP0890-20130614|3928_1  19 SVLDCDFSPDGTRVVTTSNDGTVRVWN 45 
                 4458************99887777755 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.008
   PF08662.6 124 aGeleiydvkklkkiakaeasnatl...vewspdgryv 158
                  G++ +++ ++ + +   +  ++++   + +spdg+ +
  MMETSP0890-20130614|3928_1  38 DGTVRVWNAENGTLLLVLRDHQSVVvesCAFSPDGKRI 75 
                 59999***998888777776666642227899999866 PP

>> PF12021.3  Protein of unknown function (DUF3509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.12   2.3e+02      23      34 ..       5      16 ..       3      23 .. 0.81
   2 ?    4.7   0.0     0.011        22      22      36 ..      26      40 ..      17      46 .. 0.82
   3 ?    4.0   0.0     0.018        36      24      40 ..      48      64 ..      40      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.12
   PF12021.3 23 pdGsillTLrne 34
                + G +llTLr  
  MMETSP0890-20130614|3928_1  5 LTGRLLLTLRGH 16
                5799*****976 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.011
   PF12021.3 22 rpdGsillTLrneqg 36
                 pdG +++T +n+  
  MMETSP0890-20130614|3928_1 26 SPDGTRVVTTSNDGT 40
                69********99987 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.018
   PF12021.3 24 dGsillTLrneqgvvak 40
                +G +ll Lr+ q+vv++
  MMETSP0890-20130614|3928_1 48 NGTLLLVLRDHQSVVVE 64
                79***********7764 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   2.7e+03      11      15 ..       6      10 ..       6      10 .. 0.80
   2 ?    3.0   0.4     0.029        57       8      12 ..      25      29 ..      25      29 .. 0.97
   3 ?    5.9   0.0    0.0035       6.9       8      13 ..      68      73 ..      67      73 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.4
                ----H CS
   PF10584.4 11 dGRLf 15
                +GRL+
  MMETSP0890-20130614|3928_1  6 TGRLL 10
                5**96 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.029
                ----- CS
   PF10584.4  8 FSPdG 12
                FSPdG
  MMETSP0890-20130614|3928_1 25 FSPDG 29
                9***9 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0035
                ------ CS
   PF10584.4  8 FSPdGR 13
                FSPdG+
  MMETSP0890-20130614|3928_1 68 FSPDGK 73
                *****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.78
# Mc/sec: 233.49
//
Query:       MMETSP0890-20130614|3914_1  [L=1016]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     1e-148  483.4  65.3    5.4e-22   77.4   1.3    8.1 10  PF13424.1  Tetratricopeptide repeat
   3.6e-117  379.2  29.4    2.9e-14   52.2   0.5   13.4 13  PF13374.1  Tetratricopeptide repeat
    2.2e-50  168.0  48.4    6.2e-11   41.6   0.5    7.8  7  PF13414.1  TPR repeat
    7.7e-45  147.0  28.9    3.9e-05   23.0   0.1   13.1 13  PF13176.1  Tetratricopeptide repeat
    2.3e-41  137.5  71.9    7.4e-07   28.3   0.2   13.6 14  PF00515.23 Tetratricopeptide repeat
    4.2e-37  122.9  70.8    4.5e-05   22.9   0.8   13.7 13  PF07719.12 Tetratricopeptide repeat
    2.8e-29  100.9  44.8      7e-07   29.6   0.1    9.0  9  PF13432.1  Tetratricopeptide repeat
    1.3e-25   87.3  35.3      0.014   15.4   0.1   13.6 12  PF13431.1  Tetratricopeptide repeat
    4.7e-22   76.3  38.4      0.026   15.0   0.3   13.4 13  PF13428.1  Tetratricopeptide repeat
    3.1e-21   73.3  59.9       0.01   15.4   0.3   13.5 13  PF13181.1  Tetratricopeptide repeat
    3.6e-17   62.2   0.1    5.9e-16   58.2   0.1    2.7  1  PF00069.20 Protein kinase domain
    2.2e-14   52.2   8.0      0.039   14.2   0.5   10.2 10  PF07721.9  Tetratricopeptide repeat
    4.2e-13   48.8   0.1    6.7e-09   35.1   0.0    2.6  2  PF07714.12 Protein tyrosine kinase
    7.5e-12   45.1  21.1    0.00051   20.0   0.0    7.5  8  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    9.3e-10   38.6   6.5       0.69   10.2   0.0    8.2  9  PF14357.1  Domain of unknown function (DUF4404)
    1.6e-07   30.5   6.9        0.6    8.9   0.0    6.9  9  PF04910.9  Transcriptional repressor TCF25
    0.00058   18.8   5.3       0.87    8.4   0.0    4.8  5  PF08631.5  Meiosis protein SPO22/ZIP4 like
     0.0011   18.1   3.8         23    4.2   0.1    6.4  7  PF10516.4  SHNi-TPR
     0.0035   16.8  14.8       0.34   10.4   0.2    7.8 11  PF04781.7  Protein of unknown function (DUF627)
  ------ inclusion threshold ------
      0.014   15.1  10.0         11    5.8   0.1    6.7  7  PF13371.1  Tetratricopeptide repeat
      0.091   13.1  46.7        4.8    7.7   0.1   11.4 11  PF13174.1  Tetratricopeptide repeat
       0.26   11.1   5.8        8.3    6.3   0.0    4.8  4  PF12688.2  Tetratrico peptide repeat
        1.1    8.9  21.3       0.55    9.9   0.1    6.2  6  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   2.9   1.3e-10   7.8e-08      17      74 ..     457     515 ..     440     519 .. 0.91
   2 !   27.6   0.1   3.1e-09   1.9e-06      18      77 ..     500     560 ..     498     561 .. 0.92
   3 !   51.1   0.7   1.4e-16   8.5e-14       8      77 ..     574     644 ..     568     645 .. 0.94
   4 !   58.6   0.8   6.4e-19   3.8e-16       8      77 ..     616     686 ..     616     687 .. 0.97
   5 !   74.6   1.7   6.8e-24     4e-21       1      78 []     651     729 ..     651     729 .. 0.98
   6 !   74.5   0.2   7.1e-24   4.2e-21       1      77 [.     735     812 ..     735     813 .. 0.97
   7 !   77.4   1.3   9.1e-25   5.4e-22       1      77 [.     777     854 ..     777     855 .. 0.97
   8 !   67.2   0.1   1.3e-21   7.8e-19       1      78 []     819     897 ..     819     897 .. 0.98
   9 !   73.2   0.1   1.8e-23   1.1e-20       1      77 [.     861     938 ..     861     939 .. 0.98
  10 !   65.0   0.2   6.6e-21   3.9e-18       1      76 [.     903     979 ..     903     981 .. 0.98

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.3e-10
   PF13424.1  17 rlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                   +dyd A e++  a +l  +++gd+   +a++ +nla+l+  +g ++eA+ ++e+Al 
  MMETSP0890-20130614|3914_1 457 SSEDYDLAYEHLSAARDLaEKLYGDNTEHYANSIYNLARLLKDKGLFSEAKLLYERALV 515
                 569***************88899**********************************95 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 3.1e-09
   PF13424.1  18 lgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 +g + eA  lye+al + +  +g+dhp++ +    la l++a+g+ deA++ +  A+e  +
  MMETSP0890-20130614|3914_1 500 KGLFSEAKLLYERALVIwQDIHGPDHPQVSTGRKYLAKLLRAQGKDDEAKRQYDLAIETQK 560
                 7999*************88899*******************************99988665 PP

  == domain 3    score: 51.1 bits;  conditional E-value: 1.4e-16
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 l nla++l+ +g yd+A +lye al    +++g++h  +a++ln+la +++a+g yd+A+ + e+Al i++
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYECALIScEEKFGPNHSKVAKLLNDLAFVLQAQGYYDKAKVHSERALSIRQ 644
                 45*************************9999*************************************986 PP

  == domain 4    score: 58.6 bits;  conditional E-value: 6.4e-19
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 ln la vl+++g yd+A  + e+al + + +lg++hpd+a +ln la l+  + +ydeA++++ +Al+i+e
  MMETSP0890-20130614|3914_1 616 LNDLAFVLQAQGYYDKAKVHSERALSIrQVQLGPNHPDVAESLNSLALLLITQAKYDEAKQLFTRALKIRE 686
                 789************************77789*************************************98 PP

  == domain 5    score: 74.6 bits;  conditional E-value: 6.8e-24
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hpd+a +ln lal+l  + +ydeA +l+ +al++  ++lg +hpd+a +lnnla l+  + +ydeA++++++Alei++k
  MMETSP0890-20130614|3914_1 651 HPDVAESLNSLALLLITQAKYDEAKQLFTRALKIrEEQLGANHPDVAQSLNNLAALLSDQANYDEAEPMYRRALEIDQK 729
                 9*********************************99999*************************************986 PP

  == domain 6    score: 74.5 bits;  conditional E-value: 7.1e-24
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hp++a+ lnnla++ r +g+yde    ye+a+e+  + +g+dhp++a  lnnla+l++++g+ydeA++++e+Al+i+e
  MMETSP0890-20130614|3914_1 735 HPHVAAGLNNLAESMRTQGKYDEVKPNYERAIEIwEKAYGPDHPRVAGGLNNLATLLYEQGQYDEARALHERALKIRE 812
                 899*******************************88889*************************************98 PP

  == domain 7    score: 77.4 bits;  conditional E-value: 9.1e-25
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hp +a  lnnla++l+++g+ydeA++l e+al++  ++lg+dhpd+a +lnnla l++ +g+  ++++++e+Al+i+e
  MMETSP0890-20130614|3914_1 777 HPRVAGGLNNLATLLYEQGQYDEARALHERALKIrEEKLGPDHPDVAQSLNNLAGLLRDQGKRLKSKAFYERALRIRE 854
                 7889999***************************9999**************************************98 PP

  == domain 8    score: 67.2 bits;  conditional E-value: 1.3e-21
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 hpd+a++lnnla++lr +g+  ++ ++ye+al +  + +g++hpd + +l nla+l+   g+y+e ++++e+Al+i e+
  MMETSP0890-20130614|3914_1 819 HPDVAQSLNNLAGLLRDQGKRLKSKAFYERALRIrEENFGPNHPDFVQSLKNLARLLKDEGKYEETRQCFERALRINEA 897
                 9*********************************9999**************************************985 PP

  == domain 9    score: 73.2 bits;  conditional E-value: 1.8e-23
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 hpd+ ++l nla +l+ +g+y+e ++++e+al +  +++g++hp +a +ln+la l++ +g+ydeA++++++Al+i+e
  MMETSP0890-20130614|3914_1 861 HPDFVQSLKNLARLLKDEGKYEETRQCFERALRInEATFGPNHPKVAQTLNELAVLLNGQGKYDEAEPMYRRALAIDE 938
                 89999***********************************************************************87 PP

  == domain 10    score: 65.0 bits;  conditional E-value: 6.6e-21
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 hp +a++ln+la +l  +g+ydeA+ +y++al++    +g+ h d+a  lnnla l+  +++y+eA+ + ++Al+i 
  MMETSP0890-20130614|3914_1 903 HPKVAQTLNELAVLLNGQGKYDEAEPMYRRALAIdENNFGPMHVDVACDLNNLALLLKNQNKYKEARSLMQRALDIV 979
                 899************************************************************************95 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.22   1.3e+02      17      39 ..     460     482 ..     457     485 .. 0.89
   2 !   27.5   0.0     3e-09   1.8e-06       2      42 .]     487     527 ..     486     527 .. 0.96
   3 !    8.0   0.0    0.0042       2.5       8      40 ..     535     567 ..     532     569 .. 0.91
   4 !   27.7   0.0   2.6e-09   1.5e-06       6      40 ..     575     609 ..     574     611 .. 0.96
   5 !   33.8   0.0     3e-11   1.8e-08       1      42 []     612     653 ..     612     653 .. 0.96
   6 !   35.6   0.1   8.2e-12   4.9e-09       1      42 []     654     695 ..     654     695 .. 0.99
   7 !   46.8   0.1   2.5e-15   1.5e-12       1      42 []     696     737 ..     696     737 .. 0.98
   8 !   36.3   0.0     5e-12     3e-09       1      42 []     738     779 ..     738     779 .. 0.97
   9 !   52.2   0.5   4.8e-17   2.9e-14       2      42 .]     781     821 ..     780     821 .. 0.96
  10 !   35.6   0.0   8.1e-12   4.8e-09       1      42 []     822     863 ..     822     863 .. 0.98
  11 !   25.2   0.0   1.5e-08   9.1e-06       4      41 ..     867     904 ..     865     905 .. 0.96
  12 !   33.0   0.0   5.5e-11   3.3e-08       1      41 [.     906     946 ..     906     947 .. 0.91
  13 !   23.9   0.0   4.2e-08   2.5e-05       5      38 ..     952     985 ..     952     989 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.22
   PF13374.1  17 ryeeAlaleeealairrrllGdd 39 
                 +y+ A +++ +a+++ ++l+Gd+
  MMETSP0890-20130614|3914_1 460 DYDLAYEHLSAARDLAEKLYGDN 482
                 78889999**************8 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 3e-09
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 a +  nLA++l + g + eA  l+e+al i++ ++G+dHP+
  MMETSP0890-20130614|3914_1 487 ANSIYNLARLLKDKGLFSEAKLLYERALVIWQDIHGPDHPQ 527
                 77899***********************************5 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0042
   PF13374.1   8 LAlalrargryeeAlaleeealairrrllGddH 40 
                 LA +lra+g+ +eA + +  a +++++ l ++ 
  MMETSP0890-20130614|3914_1 535 LAKLLRAQGKDDEAKRQYDLAIETQKKCLDPNS 567
                 999***********************9998875 PP

  == domain 4    score: 27.7 bits;  conditional E-value: 2.6e-09
   PF13374.1   6 nnLAlalrargryeeAlaleeealairrrllGddH 40 
                  nLA +l ++g y++A al+e al+ +++ +G++H
  MMETSP0890-20130614|3914_1 575 LNLAEMLKDQGYYDKAKALYECALISCEEKFGPNH 609
                 6********************************** PP

  == domain 5    score: 33.8 bits;  conditional E-value: 3e-11
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a  ln+LA +l+a+g y++A  + e+al+ir+  lG++HPd
  MMETSP0890-20130614|3914_1 612 VAKLLNDLAFVLQAQGYYDKAKVHSERALSIRQVQLGPNHPD 653
                 5778*************************************8 PP

  == domain 6    score: 35.6 bits;  conditional E-value: 8.2e-12
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a +ln LAl+l ++ +y+eA +l+ +al ir++ lG++HPd
  MMETSP0890-20130614|3914_1 654 VAESLNSLALLLITQAKYDEAKQLFTRALKIREEQLGANHPD 695
                 799**************************************8 PP

  == domain 7    score: 46.8 bits;  conditional E-value: 2.5e-15
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a +lnnLA +l+++ +y+eA++++++al+i ++++G dHP+
  MMETSP0890-20130614|3914_1 696 VAQSLNNLAALLSDQANYDEAEPMYRRALEIDQKIFGSDHPH 737
                 799**************************************6 PP

  == domain 8    score: 36.3 bits;  conditional E-value: 5e-12
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +aa lnnLA   r++g+y+e  + +e+a +i+++ +G+dHP+
  MMETSP0890-20130614|3914_1 738 VAAGLNNLAESMRTQGKYDEVKPNYERAIEIWEKAYGPDHPR 779
                 6899*************************************7 PP

  == domain 9    score: 52.2 bits;  conditional E-value: 4.8e-17
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 a  lnnLA +l+++g+y+eA+al+e+al ir++ lG+dHPd
  MMETSP0890-20130614|3914_1 781 AGGLNNLATLLYEQGQYDEARALHERALKIREEKLGPDHPD 821
                 6669************************************8 PP

  == domain 10    score: 35.6 bits;  conditional E-value: 8.1e-12
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a +lnnLA +lr++g++ +  a++e+al ir++ +G++HPd
  MMETSP0890-20130614|3914_1 822 VAQSLNNLAGLLRDQGKRLKSKAFYERALRIREENFGPNHPD 863
                 799**************************************8 PP

  == domain 11    score: 25.2 bits;  conditional E-value: 1.5e-08
   PF13374.1   4 alnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +l nLA++l + g+yee ++ +e+al i ++ +G++HP
  MMETSP0890-20130614|3914_1 867 SLKNLARLLKDEGKYEETRQCFERALRINEATFGPNHP 904
                 788**********************************9 PP

  == domain 12    score: 33.0 bits;  conditional E-value: 5.5e-11
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +a +ln LA++l+ +g+y+eA++++++alai +  +G+ H 
  MMETSP0890-20130614|3914_1 906 VAQTLNELAVLLNGQGKYDEAEPMYRRALAIDENNFGPMHV 946
                 799****************************9987777775 PP

  == domain 13    score: 23.9 bits;  conditional E-value: 4.2e-08
   PF13374.1   5 lnnLAlalrargryeeAlaleeealairrrllGd 38 
                 lnnLAl+l ++++y eA+ l+++al+i  + +++
  MMETSP0890-20130614|3914_1 952 LNNLALLLKNQNKYKEARSLMQRALDIVVAKFPP 985
                 8*************************98776665 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.6     2e-05     0.012       5      66 ..     442     515 ..     438     518 .. 0.87
   2 !   20.4   1.0   4.5e-07   0.00027       3      67 ..     487     558 ..     485     565 .. 0.89
   3 !   16.1   1.7   9.9e-06    0.0059       6      68 ..     574     643 ..     569     644 .. 0.86
   4 !   39.3   3.3   5.5e-13   3.3e-10       2      68 ..     654     727 ..     653     728 .. 0.92
   5 !   38.2   0.4   1.2e-12     7e-10       3      68 ..     739     811 ..     737     812 .. 0.92
   6 !   33.9   0.1   2.7e-11   1.6e-08       2      68 ..     822     895 ..     821     896 .. 0.92
   7 !   41.6   0.5     1e-13   6.2e-11       2      67 ..     906     978 ..     905     979 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-05
   PF13414.1   5 alkelGnalfk.....egdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAle 66 
                  + + Gn++fk       dyd A e+++ A +l         +++a+  ynlA ++  +g  + eA   ye+Al 
  MMETSP0890-20130614|3914_1 442 LHSNIGNYFFKkifisSEDYDLAYEHLSAARDLAeklygdntEHYANSIYNLARLLKDKG-LFSEAKLLYERALV 515
                 678899999999999899**************955555555577899*************.9***********95 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.5e-07
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                 A + ++l+  l  +g + eA  +ye+Al ++     p++++       lA++++ +gkd +eA + y++A+e 
  MMETSP0890-20130614|3914_1 487 ANSIYNLARLLKDKGLFSEAKLLYERALVIWqdihgPDHPQvstGRKYLAKLLRAQGKD-DEAKRQYDLAIET 558
                 778899************************8778889999988888889********75.9*********984 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 9.9e-06
   PF13414.1   6 lkelGnalfkegdydeAieayekAl.....eldpnn...aelyynlAlaylklgkdyeeAledyekAleld 68 
                 l +l+++l  +g yd+A ++ye Al     +  pn+   a+l++ lA +++ +g  y++A  + e+Al+++
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYECALisceeKFGPNHskvAKLLNDLAFVLQAQG-YYDKAKVHSERALSIR 643
                 6799********************95554445699844455*************.8************985 PP

  == domain 4    score: 39.3 bits;  conditional E-value: 5.5e-13
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 +Ae+l+ l+  l+++ +ydeA +++++Al+++        p+ a+ ++nlA+++  +  +y+eA  +y++Ale+d
  MMETSP0890-20130614|3914_1 654 VAESLNSLALLLITQAKYDEAKQLFTRALKIReeqlganhPDVAQSLNNLAALLSDQA-NYDEAEPMYRRALEID 727
                 79****************************966666666799999************9.7*************98 PP

  == domain 5    score: 38.2 bits;  conditional E-value: 1.2e-12
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68 
                 A  l++l++   ++g+yde    ye+A+e++     p+++     ++nlA +++++g +y+eA++  e+Al+++
  MMETSP0890-20130614|3914_1 739 AAGLNNLAESMRTQGKYDEVKPNYERAIEIWekaygPDHPRvagGLNNLATLLYEQG-QYDEARALHERALKIR 811
                 7779**************************87888899999999*************.6************986 PP

  == domain 6    score: 33.9 bits;  conditional E-value: 2.7e-11
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68 
                 +A++l++l+  l  +g+  ++ ++ye+Al+++     pn+++    + nlA ++   g +yee ++++e+Al+++
  MMETSP0890-20130614|3914_1 822 VAQSLNNLAGLLRDQGKRLKSKAFYERALRIReenfgPNHPDfvqSLKNLARLLKDEG-KYEETRQCFERALRIN 895
                 799****************************76677788888888*************.6************997 PP

  == domain 7    score: 41.6 bits;  conditional E-value: 1e-13
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnn..ae......lyynlAlaylklgkdyeeAledyekAlel 67 
                 +A++l+el+  l  +g+ydeA+ +y++Al++d+nn  +        ++nlAl++ +++ +y+eA+   ++Al +
  MMETSP0890-20130614|3914_1 906 VAQTLNELAVLLNGQGKYDEAEPMYRRALAIDENNfgPMhvdvacDLNNLALLLKNQN-KYKEARSLMQRALDI 978
                 799*****************************99866336678867899*******97.7***********986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.2   4.9e+03       1      15 [.     435     449 ..     435     449 .. 0.90
   2 !   14.3   0.0     4e-05     0.024       1      34 [.     489     522 ..     489     524 .. 0.91
   3 ?    4.7   0.1     0.047        28       4      26 ..     534     556 ..     533     567 .. 0.83
   4 !   12.7   0.1   0.00012     0.074       2      23 ..     574     595 ..     574     607 .. 0.90
   5 ?    2.6   0.0      0.21   1.3e+02       2      19 ..     616     633 ..     615     650 .. 0.78
   6 !   12.6   0.3   0.00013     0.079       1      35 [.     657     691 ..     657     692 .. 0.94
   7 !   23.0   0.1   6.6e-08   3.9e-05       1      31 [.     699     729 ..     699     734 .. 0.89
   8 !    7.6   0.0    0.0056       3.3       2      31 ..     742     771 ..     741     778 .. 0.85
   9 !   19.7   0.2   7.1e-07   0.00042       2      34 ..     784     816 ..     783     818 .. 0.91
  10 !   12.2   0.0   0.00018      0.11       1      35 [.     825     859 ..     825     860 .. 0.92
  11 !   13.6   0.0   6.5e-05     0.039       1      31 [.     867     897 ..     867     902 .. 0.86
  12 !   20.7   0.0   3.4e-07    0.0002       1      32 [.     909     940 ..     909     943 .. 0.88
  13 !   11.7   0.0   0.00026      0.15       2      28 ..     952     978 ..     952     989 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 8.2
   PF13176.1   1 allnLarlysrlgdy 15 
                 +l+ L +l+s+ g+y
  MMETSP0890-20130614|3914_1 435 SLSELFHLHSNIGNY 449
                 6889999******98 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4e-05
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +++nLarl  + g +++A  lyeraL++++d  +
  MMETSP0890-20130614|3914_1 489 SIYNLARLLKDKGLFSEAKLLYERALVIWQDIHG 522
                 578***********************99998765 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.047
   PF13176.1   4 nLarlysrlgdyekAielyeraL 26 
                 +La+l +++g+ ++A + y  a+
  MMETSP0890-20130614|3914_1 534 YLAKLLRAQGKDDEAKRQYDLAI 556
                 7**************99998844 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 0.00012
   PF13176.1   2 llnLarlysrlgdyekAielye 23 
                 llnLa++  ++g+y+kA  lye
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYE 595
                 89*******************9 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.21
   PF13176.1   2 llnLarlysrlgdyekAi 19 
                 l+ La + +++g+y+kA 
  MMETSP0890-20130614|3914_1 616 LNDLAFVLQAQGYYDKAK 633
                 78899999********95 PP

  == domain 6    score: 12.6 bits;  conditional E-value: 0.00013
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdplda 35 
                 +l+ La l   + +y++A +l++raL++++++l+a
  MMETSP0890-20130614|3914_1 657 SLNSLALLLITQAKYDEAKQLFTRALKIREEQLGA 691
                 6999*************************999886 PP

  == domain 7    score: 23.0 bits;  conditional E-value: 6.6e-08
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 +l+nLa l s++ +y++A+ +y+raL++++ 
  MMETSP0890-20130614|3914_1 699 SLNNLAALLSDQANYDEAEPMYRRALEIDQK 729
                 79**********************8888765 PP

  == domain 8    score: 7.6 bits;  conditional E-value: 0.0056
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                 l+nLa+  + +g+y++    yera+++++ 
  MMETSP0890-20130614|3914_1 742 LNNLAESMRTQGKYDEVKPNYERAIEIWEK 771
                 899****999*************8888765 PP

  == domain 9    score: 19.7 bits;  conditional E-value: 7.1e-07
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpld 34 
                 l+nLa l  ++g+y++A  l+eraL+++++ l+
  MMETSP0890-20130614|3914_1 784 LNNLATLLYEQGQYDEARALHERALKIREEKLG 816
                 89*********************9999987765 PP

  == domain 10    score: 12.2 bits;  conditional E-value: 0.00018
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdplda 35 
                 +l+nLa l +++g++ k   +yeraL+++++ +++
  MMETSP0890-20130614|3914_1 825 SLNNLAGLLRDQGKRLKSKAFYERALRIREENFGP 859
                 79**********************99999888765 PP

  == domain 11    score: 13.6 bits;  conditional E-value: 6.5e-05
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkd 31 
                 +l nLarl  + g+ye+  +++eraL++ ++
  MMETSP0890-20130614|3914_1 867 SLKNLARLLKDEGKYEETRQCFERALRINEA 897
                 689*********************8877665 PP

  == domain 12    score: 20.7 bits;  conditional E-value: 3.4e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdp 32 
                 +l+ La+l   +g+y++A+ +y+raLa+++  
  MMETSP0890-20130614|3914_1 909 TLNELAVLLNGQGKYDEAEPMYRRALAIDENN 940
                 799*********************88877655 PP

  == domain 13    score: 11.7 bits;  conditional E-value: 0.00026
   PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                 l+nLa l  ++++y++A +l +raL +
  MMETSP0890-20130614|3914_1 952 LNNLALLLKNQNKYKEARSLMQRALDI 978
                 89*********************7755 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.3   4.9e+03       4      13 ..     443     452 ..     442     453 .. 0.85
   2 ?    0.5   0.1      0.78   4.6e+02      12      31 ..     456     475 ..     453     478 .. 0.80
   3 !   11.0   0.1   0.00038      0.23       2      30 ..     488     516 ..     487     519 .. 0.90
   4 ?    5.4   0.6     0.022        13       6      30 ..     534     558 ..     531     562 .. 0.89
   5 ?    5.6   1.8      0.02        12       5      28 ..     575     598 ..     574     599 .. 0.95
   6 ?    5.7   0.1     0.018        11       1      31 [.     613     643 ..     613     644 .. 0.93
   7 !   18.4   0.1   1.8e-06     0.001       1      32 [.     655     686 ..     655     688 .. 0.94
   8 !   26.2   0.3     6e-09   3.6e-06       1      32 [.     697     728 ..     697     730 .. 0.95
   9 !   14.3   0.0   3.5e-05     0.021       1      30 [.     739     768 ..     739     771 .. 0.91
  10 !   23.4   0.5   4.5e-08   2.7e-05       3      32 ..     783     812 ..     781     814 .. 0.93
  11 !   12.0   0.1   0.00018      0.11       1      34 []     823     856 ..     823     856 .. 0.95
  12 !   21.4   0.1     2e-07   0.00012       2      32 ..     866     896 ..     865     897 .. 0.94
  13 !   28.3   0.2   1.2e-09   7.4e-07       1      34 []     907     940 ..     907     940 .. 0.97
  14 !   10.7   0.5   0.00048      0.28       4      29 ..     952     977 ..     949     978 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 8.3
                 HHHHHHHHHH CS
  PF00515.23   4 lynlGnaylk 13 
                 + n+Gn ++k
  MMETSP0890-20130614|3914_1 443 HSNIGNYFFK 452
                 78****9998 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.78
                 HHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  12 lklgkydeAleyyekALeln 31 
                  + ++yd A e+ + A  l 
  MMETSP0890-20130614|3914_1 456 ISSEDYDLAYEHLSAARDLA 475
                 5678********99987775 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                 ++ ynl+ ++  +g + eA   ye+AL +
  MMETSP0890-20130614|3914_1 488 NSIYNLARLLKDKGLFSEAKLLYERALVI 516
                 567***********************976 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.022
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALel 30 
                  l+ +++ +gk deA   y+ A+e 
  MMETSP0890-20130614|3914_1 534 YLAKLLRAQGKDDEAKRQYDLAIET 558
                 7999*******************96 PP

  == domain 5    score: 5.6 bits;  conditional E-value: 0.02
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekAL 28 
                  nl+ ++  +g yd+A + ye AL
  MMETSP0890-20130614|3914_1 575 LNLAEMLKDQGYYDKAKALYECAL 598
                 79*********************8 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                 ak l+ l+ +++ +g yd+A  + e+AL+++
  MMETSP0890-20130614|3914_1 613 AKLLNDLAFVLQAQGYYDKAKVHSERALSIR 643
                 7899*******************99999985 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a++l+ l++++  + kydeA + + +AL++++
  MMETSP0890-20130614|3914_1 655 AESLNSLALLLITQAKYDEAKQLFTRALKIRE 686
                 789**************************986 PP

  == domain 8    score: 26.2 bits;  conditional E-value: 6e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnP 32 
                 a++l+nl++++  + +ydeA+  y++ALe++ 
  MMETSP0890-20130614|3914_1 697 AQSLNNLAALLSDQANYDEAEPMYRRALEIDQ 728
                 789***************************97 PP

  == domain 9    score: 14.3 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a  l+nl+   + +gkyde    ye+A+e+
  MMETSP0890-20130614|3914_1 739 AAGLNNLAESMRTQGKYDEVKPNYERAIEI 768
                 56799************************9 PP

  == domain 10    score: 23.4 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnP 32 
                  l+nl+ +++++g+ydeA +  e+AL++++
  MMETSP0890-20130614|3914_1 783 GLNNLATLLYEQGQYDEARALHERALKIRE 812
                 58*************************986 PP

  == domain 11    score: 12.0 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a++l+nl+ +++ +gk  +  ++ye+AL+++++n
  MMETSP0890-20130614|3914_1 823 AQSLNNLAGLLRDQGKRLKSKAFYERALRIREEN 856
                 689***************************9876 PP

  == domain 12    score: 21.4 bits;  conditional E-value: 2e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnP 32 
                 ++l+nl+ ++   gky+e  +++e+AL++n+
  MMETSP0890-20130614|3914_1 866 QSLKNLARLLKDEGKYEETRQCFERALRINE 896
                 6799*************************96 PP

  == domain 13    score: 28.3 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a++l+ l++++  +gkydeA+  y++AL +++nn
  MMETSP0890-20130614|3914_1 907 AQTLNELAVLLNGQGKYDEAEPMYRRALAIDENN 940
                 7899****************************98 PP

  == domain 14    score: 10.7 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALe 29 
                 l+nl++++ +++ky+eA    ++AL 
  MMETSP0890-20130614|3914_1 952 LNNLALLLKNQNKYKEARSLMQRALD 977
                 79***************988888886 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.1   6.5e+02      13      32 ..     457     476 ..     453     478 .. 0.83
   2 !   10.3   0.2   0.00079      0.47       4      28 ..     490     514 ..     487     516 .. 0.91
   3 !    9.9   0.5    0.0011      0.65       6      30 ..     534     558 ..     531     562 .. 0.90
   4 !    8.1   0.6    0.0041       2.5       4      25 ..     574     595 ..     573     599 .. 0.92
   5 !   10.9   0.2   0.00051       0.3       1      30 [.     613     642 ..     613     644 .. 0.92
   6 !   16.4   0.2   9.1e-06    0.0054       1      31 [.     655     685 ..     655     687 .. 0.93
   7 !   16.8   0.3   6.6e-06    0.0039       1      32 [.     697     728 ..     697     730 .. 0.93
   8 !   13.3   0.0   9.2e-05     0.055       1      30 [.     739     768 ..     739     768 .. 0.95
   9 !   22.9   0.8   7.5e-08   4.5e-05       3      31 ..     783     811 ..     781     814 .. 0.92
  10 !   11.4   0.3   0.00036      0.21       1      34 []     823     856 ..     823     856 .. 0.92
  11 !   14.8   0.1   2.8e-05     0.017       3      32 ..     867     896 ..     865     897 .. 0.92
  12 !   16.4   0.2   9.2e-06    0.0055       2      34 .]     908     940 ..     907     940 .. 0.91
  13 !   16.5   0.2   8.5e-06     0.005       4      30 ..     952     978 ..     949     979 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.1
                 HTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  13 klgdyeeAleafekAleldP 32 
                  + dy+ A e++  A  l+ 
  MMETSP0890-20130614|3914_1 457 SSEDYDLAYEHLSAARDLAE 476
                 6789**********999876 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAl 28 
                  ynl++++  +g + eA+ ++e+Al
  MMETSP0890-20130614|3914_1 490 IYNLARLLKDKGLFSEAKLLYERAL 514
                 69**********************9 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0011
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAlel 30 
                 +l+++++++g+ +eA++ ++ A+e 
  MMETSP0890-20130614|3914_1 534 YLAKLLRAQGKDDEAKRQYDLAIET 558
                 89********************985 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafe 25 
                 l nl++ +  +g y++A++++e
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYE 595
                 679******************8 PP

  == domain 5    score: 10.9 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a++l+ l+ ++ ++g y++A+ + e+Al++
  MMETSP0890-20130614|3914_1 613 AKLLNDLAFVLQAQGYYDKAKVHSERALSI 642
                 6899*****************999999986 PP

  == domain 6    score: 16.4 bits;  conditional E-value: 9.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 ae l+ l+l+++ + +y+eA+++f +Al++ 
  MMETSP0890-20130614|3914_1 655 AESLNSLALLLITQAKYDEAKQLFTRALKIR 685
                 78999***********************986 PP

  == domain 7    score: 16.8 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a+ l+nl+ ++  + +y+eA+  +++Ale+d 
  MMETSP0890-20130614|3914_1 697 AQSLNNLAALLSDQANYDEAEPMYRRALEIDQ 728
                 5689**************************96 PP

  == domain 8    score: 13.3 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a +l+nl+++ + +g+y+e +  +e+A+e+
  MMETSP0890-20130614|3914_1 739 AAGLNNLAESMRTQGKYDEVKPNYERAIEI 768
                 6789************************96 PP

  == domain 9    score: 22.9 bits;  conditional E-value: 7.5e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                 +l+nl+ ++y++g+y+eA+++ e+Al++ 
  MMETSP0890-20130614|3914_1 783 GLNNLATLLYEQGQYDEARALHERALKIR 811
                 799************************96 PP

  == domain 10    score: 11.4 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+ l+nl+ +++ +g+  + ++++e+Al++  +n
  MMETSP0890-20130614|3914_1 823 AQSLNNLAGLLRDQGKRLKSKAFYERALRIREEN 856
                 5679*************************98765 PP

  == domain 11    score: 14.8 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldP 32 
                  l nl++++   g+yee +++fe+Al+++ 
  MMETSP0890-20130614|3914_1 867 SLKNLARLLKDEGKYEETRQCFERALRINE 896
                 5789***********************995 PP

  == domain 12    score: 16.4 bits;  conditional E-value: 9.2e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 + l++l+ ++  +g+y+eA+  +++Al++d nn
  MMETSP0890-20130614|3914_1 908 QTLNELAVLLNGQGKYDEAEPMYRRALAIDENN 940
                 678889999999******************997 PP

  == domain 13    score: 16.5 bits;  conditional E-value: 8.5e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAlel 30 
                 l+nl+l++ ++++y+eA+ ++++Al +
  MMETSP0890-20130614|3914_1 952 LNNLALLLKNQNKYKEARSLMQRALDI 978
                 89***********************86 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   2.0   0.00021      0.12       8      60 ..     456     516 ..     453     526 .. 0.85
   2 ?    5.1   0.1     0.058        35      35      58 ..     533     556 ..     521     569 .. 0.66
   3 !   12.0   0.8    0.0004      0.24       3      59 ..     535     604 ..     533     610 .. 0.83
   4 ?    0.1   0.0       2.1   1.2e+03      33      58 ..     615     640 ..     608     652 .. 0.70
   5 !   26.7   3.0   9.4e-09   5.6e-06       2      61 ..     660     727 ..     659     729 .. 0.96
   6 !   22.3   0.7   2.2e-07   0.00013       3      60 ..     703     768 ..     701     776 .. 0.92
   7 !   28.0   2.3   3.6e-09   2.2e-06       3      60 ..     787     852 ..     785     862 .. 0.93
   8 !   29.6   0.1   1.2e-09     7e-07       3      63 ..     871     939 ..     869     940 .. 0.96
   9 ?    6.0   0.0     0.029        17       3      26 ..     955     978 ..     952     994 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00021
   PF13432.1   8 lraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 + + dyd A+++l+aa++la         ++a+  ++la++l ++g + eA  l+++al +
  MMETSP0890-20130614|3914_1 456 ISSEDYDLAYEHLSAARDLAeklygdntEHYANSIYNLARLLKDKGLFSEAKLLYERALVI 516
                 66789***************9887766666*************************999943 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.058
   PF13432.1  35 lllaeallrlgrldeAaallraal 58 
                  +la +l ++g+ deA + ++ a+
  MMETSP0890-20130614|3914_1 533 KYLAKLLRAQGKDDEAKRQYDLAI 556
                 556666666666666664444443 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.0004
   PF13432.1   3 lArallraGdydeAlaaleaalala.....Pe...aaeallllaeallrlgrldeAaallraal.....a 59 
                 lA++l ++G+ deA ++++ a++ +     P    +   ll+lae+l ++g +d+A al++ al     +
  MMETSP0890-20130614|3914_1 535 LAKLLRAQGKDDEAKRQYDLAIETQkkcldPNsqnYTSDLLNLAEMLKDQGYYDKAKALYECALisceeK 604
                 799***************99999999999944343555589999999999************98655555 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 2.1
   PF13432.1  33 allllaeallrlgrldeAaallraal 58 
                  l  la +l ++g +d+A    ++al
  MMETSP0890-20130614|3914_1 615 LLNDLAFVLQAQGYYDKAKVHSERAL 640
                 677899999*******9974444444 PP

  == domain 5    score: 26.7 bits;  conditional E-value: 9.4e-09
   PF13432.1   2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalala 61 
                 +lA++l+ + +ydeA +++ +al+          P+ a+ l +la +l ++ ++deA+  +r+al+++
  MMETSP0890-20130614|3914_1 660 SLALLLITQAKYDEAKQLFTRALKIReeqlganhPDVAQSLNNLAALLSDQANYDEAEPMYRRALEID 727
                 58**************************************************************9876 PP

  == domain 6    score: 22.3 bits;  conditional E-value: 2.2e-07
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 lA +l ++ +ydeA++ +++al+ +        P+ a  l +lae+   +g++de    +++a+++
  MMETSP0890-20130614|3914_1 703 LAALLSDQANYDEAEPMYRRALEIDqkifgsdhPHVAAGLNNLAESMRTQGKYDEVKPNYERAIEI 768
                 899****************************************************99888888755 PP

  == domain 7    score: 28.0 bits;  conditional E-value: 3.6e-09
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 lA +l+++G+ydeA+a++e+al+          P+ a+ l +la +l ++g+  ++ a++++al++
  MMETSP0890-20130614|3914_1 787 LATLLYEQGQYDEARALHERALKIReeklgpdhPDVAQSLNNLAGLLRDQGKRLKSKAFYERALRI 852
                 89****************************99999****************************965 PP

  == domain 8    score: 29.6 bits;  conditional E-value: 1.2e-09
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalalaPd 63 
                 lAr+l + G+y+e ++++e+al+ +        P+ a+ l +la++l  +g++deA+  +r+ala++ +
  MMETSP0890-20130614|3914_1 871 LARLLKDEGKYEETRQCFERALRINeatfgpnhPKVAQTLNELAVLLNGQGKYDEAEPMYRRALAIDEN 939
                 89**************************************************************98866 PP

  == domain 9    score: 6.0 bits;  conditional E-value: 0.029
   PF13432.1   3 lArallraGdydeAlaaleaalal 26 
                 lA++l ++++y+eA+ + ++al+ 
  MMETSP0890-20130614|3914_1 955 LALLLKNQNKYKEARSLMQRALDI 978
                 566666666677777777777764 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.044        26      11      32 ..     485     506 ..     481     507 .. 0.82
   2 ?    5.2   0.0     0.043        26       2      33 ..     510     549 ..     509     550 .. 0.75
   3 ?    4.5   0.1     0.075        44      16      33 ..     574     591 ..     560     592 .. 0.77
   4 ?    5.7   0.0     0.031        18      13      33 ..     613     633 ..     604     634 .. 0.85
   5 !    8.6   0.0    0.0036       2.1       9      34 .]     651     676 ..     646     676 .. 0.94
   6 !   10.4   0.4   0.00093      0.55       8      33 ..     692     717 ..     691     718 .. 0.94
   7 ?    6.0   0.0     0.025        15       1      31 [.     719     757 ..     719     759 .. 0.79
   8 !   15.4   0.1   2.3e-05     0.014       2      34 .]     762     802 ..     761     802 .. 0.78
   9 ?    3.6   0.0      0.14        82       9      28 ..     819     838 ..     804     844 .. 0.86
  10 !    9.4   0.0     0.002       1.2       9      33 ..     861     885 ..     845     886 .. 0.71
  11 !   11.8   0.0   0.00033       0.2       1      33 [.     887     927 ..     887     928 .. 0.82
  12 !   14.1   1.1     6e-05     0.036       1      33 [.     929     969 ..     929     970 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.044
   PF13431.1  11 nnadaynnLAelllnnGdleeA 32 
                  +a++ +nLA+ll+++G + eA
  MMETSP0890-20130614|3914_1 485 HYANSIYNLARLLKDKGLFSEA 506
                 5799***********9966655 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.043
   PF13431.1   2 yekaleld.....Pnnadayn...nLAelllnnGdleeAe 33 
                 ye+al +      P+++++ +   +LA+ll ++G+ +eA+
  MMETSP0890-20130614|3914_1 510 YERALVIWqdihgPDHPQVSTgrkYLAKLLRAQGKDDEAK 549
                 666666644455577777777777**************97 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.075
   PF13431.1  16 ynnLAelllnnGdleeAe 33 
                 + nLAe l+++G +++A+
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAK 591
                 56**************98 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.031
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a ++n LA +l+++G +++A+
  MMETSP0890-20130614|3914_1 613 AKLLNDLAFVLQAQGYYDKAK 633
                 889****************96 PP

  == domain 5    score: 8.6 bits;  conditional E-value: 0.0036
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAeq 34 
                 +P+ a+++n LA+ll  + +++eA+q
  MMETSP0890-20130614|3914_1 651 HPDVAESLNSLALLLITQAKYDEAKQ 676
                 7899********************97 PP

  == domain 6    score: 10.4 bits;  conditional E-value: 0.00093
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                 ++P+ a+++nnLA ll+++ +++eAe
  MMETSP0890-20130614|3914_1 692 NHPDVAQSLNNLAALLSDQANYDEAE 717
                 68999*******************97 PP

  == domain 7    score: 6.0 bits;  conditional E-value: 0.025
   PF13431.1   1 lyekaleld........PnnadaynnLAelllnnGdlee 31 
                 +y++ale+d        P  a  +nnLAe    +G+++e
  MMETSP0890-20130614|3914_1 719 MYRRALEIDqkifgsdhPHVAAGLNNLAESMRTQGKYDE 757
                 79999999855555444555999*************997 PP

  == domain 8    score: 15.4 bits;  conditional E-value: 2.3e-05
   PF13431.1   2 yekaleld.....Pnn...adaynnLAelllnnGdleeAeq 34 
                 ye+a+e+      P++   a  +nnLA+ll+++G+++eA++
  MMETSP0890-20130614|3914_1 762 YERAIEIWekaygPDHprvAGGLNNLATLLYEQGQYDEARA 802
                 788888865555544455588899***************96 PP

  == domain 9    score: 3.6 bits;  conditional E-value: 0.14
   PF13431.1   9 dPnnadaynnLAelllnnGd 28 
                 +P+ a+++nnLA ll ++G+
  MMETSP0890-20130614|3914_1 819 HPDVAQSLNNLAGLLRDQGK 838
                 68889**********99997 PP

  == domain 10    score: 9.4 bits;  conditional E-value: 0.002
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                 +P+ ++++ nLA+ll++ G++ee +
  MMETSP0890-20130614|3914_1 861 HPDFVQSLKNLARLLKDEGKYEETR 885
                 566788888************9855 PP

  == domain 11    score: 11.8 bits;  conditional E-value: 0.00033
   PF13431.1   1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33 
                 ++e+al+++     Pn+   a+ +n+LA+ll  +G+++eAe
  MMETSP0890-20130614|3914_1 887 CFERALRINeatfgPNHpkvAQTLNELAVLLNGQGKYDEAE 927
                 577777777777776665569*******************7 PP

  == domain 12    score: 14.1 bits;  conditional E-value: 6e-05
   PF13431.1   1 lyekaleldPnnadayn........nLAelllnnGdleeAe 33 
                 +y++al++d nn+  ++        nLA+ll+n+++++eA+
  MMETSP0890-20130614|3914_1 929 MYRRALAIDENNFGPMHvdvacdlnNLALLLKNQNKYKEAR 969
                 7***********4444445555777***************8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       2.9   1.7e+03      11      30 ..     455     474 ..     453     485 .. 0.80
   2 ?    5.8   0.0     0.039        23       4      30 ..     490     521 ..     487     530 .. 0.79
   3 ?    6.5   0.2     0.023        13       5      31 ..     533     559 ..     529     568 .. 0.85
   4 ?    2.9   0.1      0.35   2.1e+02       4      25 ..     574     595 ..     571     595 .. 0.92
   5 ?    7.3   0.0     0.013       7.6       2      37 ..     614     654 ..     613     658 .. 0.81
   6 !    9.3   0.2     0.003       1.8       4      37 ..     658     691 ..     655     693 .. 0.86
   7 !   13.6   0.1   0.00012      0.07       5      31 ..     701     727 ..     697     734 .. 0.89
   8 ?    4.5   0.0       0.1        62       3      31 ..     741     769 ..     739     784 .. 0.70
   9 !   15.0   0.3   4.4e-05     0.026       4      38 ..     784     823 ..     781     827 .. 0.83
  10 ?    1.5   0.1      0.94   5.6e+02       5      34 ..     827     856 ..     822     867 .. 0.83
  11 !    8.1   0.1     0.007       4.2       4      31 ..     868     895 ..     865     915 .. 0.78
  12 !   14.9   0.1   4.7e-05     0.028       3      34 ..     909     940 ..     906     943 .. 0.90
  13 ?    3.8   0.0      0.17     1e+02       6      29 ..     954     977 ..     951     997 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 2.9
   PF13428.1  11 llalGdpdeAiallrralal 30 
                 ++ ++d+d A ++l +a  l
  MMETSP0890-20130614|3914_1 455 FISSEDYDLAYEHLSAARDL 474
                 778999999*9999999654 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.039
   PF13428.1   4 llalarallalGdpdeAiallrrala.....l 30 
                  + lar+l + G + eA  l++ral      +
  MMETSP0890-20130614|3914_1 490 IYNLARLLKDKGLFSEAKLLYERALViwqdiH 521
                 588*********************97444444 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.023
   PF13428.1   5 lalarallalGdpdeAiallrralala 31 
                   la +l+a+G  deA ++++ a++++
  MMETSP0890-20130614|3914_1 533 KYLAKLLRAQGKDDEAKRQYDLAIETQ 559
                 579******************999875 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.35
   PF13428.1   4 llalarallalGdpdeAiallr 25 
                 ll la+ l ++G +d+A al++
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYE 595
                 689****************996 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.013
   PF13428.1   2 eallalarallalGdpdeAiallrrala.....laPddaea 37 
                 ++l +la +l a+G +d+A  + +ral+     l+P+++++
  MMETSP0890-20130614|3914_1 614 KLLNDLAFVLQAQGYYDKAKVHSERALSirqvqLGPNHPDV 654
                 57889*********************875555567777776 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 0.003
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddaea 37 
                 l  la +l+ +  +deA +l+ ral+   +++ a
  MMETSP0890-20130614|3914_1 658 LNSLALLLITQAKYDEAKQLFTRALKIREEQLGA 691
                 6679*********************998887766 PP

  == domain 7    score: 13.6 bits;  conditional E-value: 0.00012
   PF13428.1   5 lalarallalGdpdeAiallrralala 31 
                   la++l ++ ++deA+ ++rral+ +
  MMETSP0890-20130614|3914_1 701 NNLAALLSDQANYDEAEPMYRRALEID 727
                 579*********************977 PP

  == domain 8    score: 4.5 bits;  conditional E-value: 0.1
   PF13428.1   3 allalarallalGdpdeAiallrralala 31 
                  l  la+ ++ +G +de    ++ra++  
  MMETSP0890-20130614|3914_1 741 GLNNLAESMRTQGKYDEVKPNYERAIEIW 769
                 57789*********999888888888742 PP

  == domain 9    score: 15.0 bits;  conditional E-value: 4.4e-05
   PF13428.1   4 llalarallalGdpdeAiallrrala.....laPddaeal 38 
                 l  la +l ++G++deA+al +ral+     l+Pd++++ 
  MMETSP0890-20130614|3914_1 784 LNNLATLLYEQGQYDEARALHERALKireekLGPDHPDVA 823
                 5679********************9866666788888765 PP

  == domain 10    score: 1.5 bits;  conditional E-value: 0.94
   PF13428.1   5 lalarallalGdpdeAiallrralalaPdd 34 
                   la +l+++G   +  a ++ral+   ++
  MMETSP0890-20130614|3914_1 827 NNLAGLLRDQGKRLKSKAFYERALRIREEN 856
                 57999*******************966554 PP

  == domain 11    score: 8.1 bits;  conditional E-value: 0.007
   PF13428.1   4 llalarallalGdpdeAiallrralala 31 
                 l  lar+l + G ++e +++++ral+ +
  MMETSP0890-20130614|3914_1 868 LKNLARLLKDEGKYEETRQCFERALRIN 895
                 5679*********************954 PP

  == domain 12    score: 14.9 bits;  conditional E-value: 4.7e-05
   PF13428.1   3 allalarallalGdpdeAiallrralalaPdd 34 
                 +l +la +l  +G +deA+ ++rrala + ++
  MMETSP0890-20130614|3914_1 909 TLNELAVLLNGQGKYDEAEPMYRRALAIDENN 940
                 67789**********************99876 PP

  == domain 13    score: 3.8 bits;  conditional E-value: 0.17
   PF13428.1   6 alarallalGdpdeAiallrrala 29 
                  la +l +++ ++eA+ l +ral 
  MMETSP0890-20130614|3914_1 954 NLALLLKNQNKYKEARSLMQRALD 977
                 69999*****************85 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.26   1.5e+02      10      30 ..     454     474 ..     453     477 .. 0.81
   2 !    8.4   0.4    0.0029       1.7       2      28 ..     488     514 ..     487     514 .. 0.92
   3 ?    3.3   0.2      0.13        75      14      29 ..     549     564 ..     534     564 .. 0.73
   4 !    7.1   0.5    0.0077       4.6       4      25 ..     574     595 ..     571     598 .. 0.91
   5 !    7.0   0.1     0.008       4.8       2      31 ..     614     643 ..     613     646 .. 0.87
   6 !    7.9   0.2    0.0042       2.5       2      31 ..     656     685 ..     655     688 .. 0.91
   7 !   15.4   0.3   1.7e-05      0.01       2      33 ..     698     730 ..     697     731 .. 0.92
   8 !    8.4   0.0    0.0029       1.7       2      30 ..     740     768 ..     739     769 .. 0.93
   9 !    8.2   0.2    0.0035       2.1       3      31 ..     783     811 ..     781     814 .. 0.88
  10 !    9.7   0.1    0.0011      0.67       2      32 ..     824     854 ..     823     857 .. 0.90
  11 !   11.6   0.0   0.00028      0.17       3      32 ..     867     896 ..     865     899 .. 0.89
  12 !   12.2   0.1   0.00018      0.11       2      34 .]     908     940 ..     907     941 .. 0.90
  13 !    7.5   0.4    0.0058       3.4       4      30 ..     952     978 ..     951     978 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.26
                 HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  10 iYrqlGdydkAkeylekalel 30 
                 i+ +  dyd+A+e+l  a +l
  MMETSP0890-20130614|3914_1 454 IFISSEDYDLAYEHLSAARDL 474
                 678889********9877666 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0029
                 --TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekal 28 
                 ++ ynl+++++++G +++Ak  +e+al
  MMETSP0890-20130614|3914_1 488 NSIYNLARLLKDKGLFSEAKLLYERAL 514
                 5679********************997 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.13
                 TT-HHHHHHHHH---H CS
   PF13181.1  14 lGdydkAkeylekale 29 
                 + +yd+A+e  +k+l+
  MMETSP0890-20130614|3914_1 549 KRQYDLAIETQKKCLD 564
                 5578888888888875 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0077
                 TTT---HHHHTT-HHHHHHHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeyle 25 
                 ++nl++ +++ G ydkAk+ +e
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYE 595
                 679****************997 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.008
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 k+++ l+ ++   G ydkAk + e+al++ 
  MMETSP0890-20130614|3914_1 614 KLLNDLAFVLQAQGYYDKAKVHSERALSIR 643
                 677788889999***************996 PP

  == domain 6    score: 7.9 bits;  conditional E-value: 0.0042
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 ++++ l++++    +yd+Ak+ + +al++ 
  MMETSP0890-20130614|3914_1 656 ESLNSLALLLITQAKYDEAKQLFTRALKIR 685
                 67899***********************96 PP

  == domain 7    score: 15.4 bits;  conditional E-value: 1.7e-05
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp.r 33 
                 ++++nl+ ++ +  +yd+A+  +++ale+++ +
  MMETSP0890-20130614|3914_1 698 QSLNNLAALLSDQANYDEAEPMYRRALEIDQkI 730
                 7899*************************9855 PP

  == domain 8    score: 8.4 bits;  conditional E-value: 0.0029
                 --TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                 + ++nl++ +r  G+yd+ k  +e+a+e+
  MMETSP0890-20130614|3914_1 740 AGLNNLAESMRTQGKYDEVKPNYERAIEI 768
                 5689***********************97 PP

  == domain 9    score: 8.2 bits;  conditional E-value: 0.0035
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                  ++nl+ ++ + G+yd+A +  e+al++ 
  MMETSP0890-20130614|3914_1 783 GLNNLATLLYEQGQYDEARALHERALKIR 811
                 589****************9999999885 PP

  == domain 10    score: 9.7 bits;  conditional E-value: 0.0011
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++++nl+ ++r+ G+  k+k+++e+al +  
  MMETSP0890-20130614|3914_1 824 QSLNNLAGLLRDQGKRLKSKAFYERALRIRE 854
                 7899***********************9986 PP

  == domain 11    score: 11.6 bits;  conditional E-value: 0.00028
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++ nl++++++ G+y++  +++e+al ++ 
  MMETSP0890-20130614|3914_1 867 SLKNLARLLKDEGKYEETRQCFERALRINE 896
                 5679**********************9986 PP

  == domain 12    score: 12.2 bits;  conditional E-value: 0.00018
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkprn 34 
                 +++++l+ ++   G+yd+A+  +++al ++ +n
  MMETSP0890-20130614|3914_1 908 QTLNELAVLLNGQGKYDEAEPMYRRALAIDENN 940
                 67899999999******************9954 PP

  == domain 13    score: 7.5 bits;  conditional E-value: 0.0058
                 TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                 ++nl++++++ ++y++A + +++al++
  MMETSP0890-20130614|3914_1 952 LNNLALLLKNQNKYKEARSLMQRALDI 978
                 689**********************97 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.1     1e-18   5.9e-16       3     256 ..     127     414 ..     125     417 .. 0.76

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 1e-18
                 EEEEEE----EEEEEEEETTCC.EEEEEEEEEGGGHHHHHHHHHHH.........HHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHH.TCEE-S--SGGGEEEETT--E........EE------EEECEESS-CSS----GGGS-HHHHH...........................................TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20   3 lleklGsGsfGkVykakkkktg.kkvAvKilkkeeekskkektavr.........Elkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHs.ngiiHrDLKpeNiLldkkgel........kiaDFGlakkleksseklttlvgtreYmAPEvll...........................................kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 +++ lGsG+f+ Vy+++ +k   k  A+K++  +++++k    a r         E++++ kl +H n+v + ++f+ ++++y+++++v gg+  +  +    l+ +++  +a++i++gl+y+H+   +++ DL p+ +L++  g          k++ FG++            + +t  Y++PE                                              + + + ++ D W+l+v+++e+ltgk + + +           + + +l++d+       +++ +l  ++l+k+p+kR+ +++++k
  MMETSP0890-20130614|3914_1 127 IKRWLGSGAFADVYQVETNKVVlKHEAMKVIILKSQNDKLISDAERirrlrphviEAHLMLKLgRHANLVGVNAAFQINEDFYFFQDLVSGGQTLKSTM--SLLTIDQAILVAYKIANGLAYMHDtCYFCFWDLNPSQVLVELLGADmnravgavKLSGFGCSGG----------IGCTWAYASPETRAllvppkkkddpysprpfrvpsfsesdsvtlatiagieteklspRLRVAAQSQDQWALAVTIVEMLTGKRVENAH-----------QVSLQLHQDCG------NDAIKLALQCLDKEPSKRPAMRDLVK 414
                 6788**********9987665415779998888887777665555567889************99***************************7774444..688*********************669*************944444567889999999999975..........555555555555333345555555555555555555558888889999999999998889999999**************97665555...........11112222222......56777777777777777777777665 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       4.2   2.5e+03       2      18 ..     177     193 ..     176     193 .. 0.87
   2 ?   -0.0   0.0       2.6   1.6e+03       7      23 ..     535     551 ..     534     553 .. 0.86
   3 ?    6.8   0.0     0.016       9.5       4      25 ..     574     595 ..     574     595 .. 0.93
   4 ?    5.5   0.0     0.041        25       6      25 ..     618     637 ..     614     638 .. 0.85
   5 ?    3.5   0.0      0.19   1.2e+02       2      26 .]     698     722 ..     697     722 .. 0.89
   6 ?    0.9   0.0       1.3   7.7e+02       2      19 ..     740     757 ..     739     758 .. 0.87
   7 !   14.2   0.5   6.6e-05     0.039       4      23 ..     784     803 ..     781     806 .. 0.88
   8 ?   -0.0   0.0       2.6   1.5e+03       6      26 .]     870     890 ..     870     890 .. 0.86
   9 !    9.8   0.0    0.0017         1       3      26 .]     909     932 ..     907     932 .. 0.88
  10 ?    1.2   0.0       1.1   6.3e+02       6      26 .]     954     974 ..     952     974 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 4.2
                 HHH---HHHHHH----- CS
   PF07721.9   2 rallaLArallalGdld 18 
                 r ++  A ++l lG+++
  MMETSP0890-20130614|3914_1 177 RPHVIEAHLMLKLGRHA 193
                 678889*********97 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 2.6
                 -HHHHHH-------HHH CS
   PF07721.9   7 LArallalGdldeAral 23 
                 LA +l a+G  deA + 
  MMETSP0890-20130614|3914_1 535 LAKLLRAQGKDDEAKRQ 551
                 899******99999876 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.016
                 H---HHHHHH-------HHHHH CS
   PF07721.9   4 llaLArallalGdldeAralle 25 
                 ll+LA+ l ++G +d A al e
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYE 595
                 689**************99976 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.041
                 --HHHHHH-------HHHHH CS
   PF07721.9   6 aLArallalGdldeAralle 25 
                 +LA +l+a+G +d A  + e
  MMETSP0890-20130614|3914_1 618 DLAFVLQAQGYYDKAKVHSE 637
                 79************987765 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.19
                 HHH---HHHHHH-------HHHHHT CS
   PF07721.9   2 rallaLArallalGdldeAraller 26 
                 + l +LA +l ++ ++deA+ + +r
  MMETSP0890-20130614|3914_1 698 QSLNNLAALLSDQANYDEAEPMYRR 722
                 56779****************9997 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 1.3
                 HHH---HHHHHH------ CS
   PF07721.9   2 rallaLArallalGdlde 19 
                 + l +LA+ +  +G +de
  MMETSP0890-20130614|3914_1 740 AGLNNLAESMRTQGKYDE 757
                 56779**********998 PP

  == domain 7    score: 14.2 bits;  conditional E-value: 6.6e-05
                 H---HHHHHH-------HHH CS
   PF07721.9   4 llaLArallalGdldeAral 23 
                 l +LA +l+++G++deAral
  MMETSP0890-20130614|3914_1 784 LNNLATLLYEQGQYDEARAL 803
                 669***************98 PP

  == domain 8    score: -0.0 bits;  conditional E-value: 2.6
                 --HHHHHH-------HHHHHT CS
   PF07721.9   6 aLArallalGdldeAraller 26 
                 +LAr+l + G ++e r+ +er
  MMETSP0890-20130614|3914_1 870 NLARLLKDEGKYEETRQCFER 890
                 79**********997777765 PP

  == domain 9    score: 9.8 bits;  conditional E-value: 0.0017
                 HH---HHHHHH-------HHHHHT CS
   PF07721.9   3 allaLArallalGdldeAraller 26 
                 +l  LA +l  +G +deA+ + +r
  MMETSP0890-20130614|3914_1 909 TLNELAVLLNGQGKYDEAEPMYRR 932
                 56679***************9997 PP

  == domain 10    score: 1.2 bits;  conditional E-value: 1.1
                 --HHHHHH-------HHHHHT CS
   PF07721.9   6 aLArallalGdldeAraller 26 
                 +LA +l  +  + eAr l++r
  MMETSP0890-20130614|3914_1 954 NLALLLKNQNKYKEARSLMQR 974
                 89**************99986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.1e-11   6.7e-09       3     150 ..     127     287 ..     125     306 .. 0.77
   2 !   11.0   0.0   0.00025      0.15     187     259 .]     356     416 ..     341     416 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.1e-11
                 EEEEE-------EEEEEEET.TTTSSEEEEEE.EEECT.....TSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEET........TTEEEE-----C CS
  PF07714.12   3 lgkklGeGafGkVvegtlkg.ekekkevkVav.Ktlke.....saeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk.lvHrdLaarNvLlee........ekvvkisDfGLa 150
                 +++ lG+Gaf++V++ + ++   +++ +kV + K+ ++      ++ ++ +  + ea++m kl +h n+v + +++  +e +++  ++v+gG+    L+++  + lt+++ + +a++ia+G++y+++   +   dL    vL+e            vk+s fG +
  MMETSP0890-20130614|3914_1 127 IKRWLGSGAFADVYQVETNKvVLKHEAMKVIIlKSQNDklisdAERIRRLRPHVIEAHLMLKLgRHANLVGVNAAFQINEDFYFFQDLVSGGQ---TLKST-MSLLTIDQAILVAYKIANGLAYMHDTCyFCFWDLNPSQVLVELlgadmnraVGAVKLSGFGCS 287
                 6788***************995556666666526665423211222222444556**********************99*************5...55665.6779********************986467899999999998666666655557788888765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00025
                 HHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12 187 DvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 D W+  v++ E++t       +++n+       ++  l+  ++c ++  +l  qC+++ep++Rp +++lv+ l
  MMETSP0890-20130614|3914_1 356 DQWALAVTIVEMLTGK-----RVENA-------HQVSLQLHQDCGNDAIKLALQCLDKEPSKRPAMRDLVKSL 416
                 6666666666666622.....22222.......2345677889**************************9876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.4      0.76   4.5e+02      27      77 ..     449     506 ..     419     513 .. 0.56
   2 ?    2.3   1.0      0.28   1.6e+02       8      77 ..     471     548 ..     464     553 .. 0.69
   3 ?    3.2   2.8      0.15        87       5      69 ..     552     621 ..     541     633 .. 0.60
   4 !    9.2   0.1     0.002       1.2       2      60 ..     626     691 ..     625     703 .. 0.76
   5 !   20.0   0.0   8.6e-07   0.00051       1      80 [.     709     803 ..     709     807 .. 0.81
   6 !   10.7   0.0   0.00065      0.38       4      53 ..     761     810 ..     758     823 .. 0.76
   7 ?    1.0   0.0       0.7   4.2e+02      41      84 .]     846     891 ..     805     891 .. 0.69
   8 !   13.7   0.0   7.8e-05     0.046       2      54 ..     920     984 ..     919    1002 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.76
                 CHHHHHHHHHH---HHHHHHHHHC.....TSHCHCB....HHHHHHHHHHHHHTT-HHHH CS
   PF12895.2  27 ylyalAlclylngeykrAyellrk.....leldsss....lgcryllArcllklgkydeA 77 
                 y +   + + ++++y+ Aye l+      ++l   +    + + y lAr l + g ++eA
  MMETSP0890-20130614|3914_1 449 YFF--KKIFISSEDYDLAYEHLSAardlaEKLYGDNtehyANSIYNLARLLKDKGLFSEA 506
                 455..6777777777777777755655553333322111222223334444444444444 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.28
                 HHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHH CS
   PF12895.2   8 AlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeA 77 
                 A  laekl+  +  ++ + ++y+lA  l   g + +A  l+++        + + +++ +     lA+ l ++gk deA
  MMETSP0890-20130614|3914_1 471 ARDLAEKLYGDNT-EHYANSIYNLARLLKDKGLFSEAKLLYERalviwqDIHGPDHPQVSTgrkYLAKLLRAQGKDDEA 548
                 666899**99987.3356688888**********999888888887775333335544444444557777777776666 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHHHHHHH CS
   PF12895.2   5 yknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcryllArcll 69 
                 y+ A+    k l  ++++  ++ l++lA+ l  +g y++A  l++       +++ +++ + + ll+  ++
  MMETSP0890-20130614|3914_1 552 YDLAIETQKKCLDPNSQN-YTSDLLNLAEMLKDQGYYDKAKALYECalisceEKFGPNHSKVAKLLNDLAF 621
                 333333333333333322.5568899999999999999998888547777766666677666666654433 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.002
                 TT-HHHHHHHHHHHCCC-ST.......-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHH CS
   PF12895.2   2 qhnyknAlflaekllaespk.......dpedaylyalAlclylngeykrAyellrk.leldssslgc 60 
                 q+ y++A  ++e++l+  +        d  +++l  lAl l  +++y++A +l+++ l++++++lg+
  MMETSP0890-20130614|3914_1 626 QGYYDKAKVHSERALSIRQVqlgpnhpD-VAESLNSLALLLITQAKYDEAKQLFTRaLKIREEQLGA 691
                 6789999999999999976688775422.33355556*****************9997777766655 PP

  == domain 5    score: 20.0 bits;  conditional E-value: 8.6e-07
                 HTT-HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH---H.......HHHHHHHHCTSHCHCB...HHHHHHHHHHHHHTT-HHHHCCC CS
   PF12895.2   1 eqhnyknAlflaekllaespk....dp..edaylyalAlclylngey.......krAyellrkleldsss...lgcryllArcllklgkydeAiav 80 
                 +q ny++A+ +++++l+ ++k    d+   +a l +lA+++  +g+y       +rA+e+ + + + + +   +g    lA  l+++g+ydeA+a+
  MMETSP0890-20130614|3914_1 709 DQANYDEAEPMYRRALEIDQKifgsDHphVAAGLNNLAESMRTQGKYdevkpnyERAIEIWE-KAYGPDHprvAGGLNNLATLLYEQGQYDEARAL 803
                 689*****************98886334566677779**********999999999999995.566667733344555889************986 PP

  == domain 6    score: 10.7 bits;  conditional E-value: 0.00065
                 -HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC.TSH CS
   PF12895.2   4 nyknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk.lel 53 
                 ny+ A+ + ek++  ++  p  +  l +lA  ly++g+y++A  l ++ l++
  MMETSP0890-20130614|3914_1 761 NYERAIEIWEKAYGPDH--PrVAGGLNNLATLLYEQGQYDEARALHERaLKI 810
                 89999999999999987..4355666778**********9997766556444 PP

  == domain 7    score: 1.0 bits;  conditional E-value: 0.7
                 HHHHHHHHHCTSHCHCB...HHHHHHHHHHHHHTT-HHHHCCCHHHH CS
   PF12895.2  41 ykrAyellrkleldsss...lgcryllArcllklgkydeAiavLeka 84 
                 y+rA+ +  ++++ +++   +++   lAr l + gky+e ++++e+a
  MMETSP0890-20130614|3914_1 846 YERALRIR-EENFGPNHpdfVQSLKNLARLLKDEGKYEETRQCFERA 891
                 34444433.26666677655566667799999999****99999985 PP

  == domain 8    score: 13.7 bits;  conditional E-value: 7.8e-05
                 TT-HHHHHHHHHHHCCC-ST.....-HHHH....CHHHHHHHHHH---HHHHHHHHHC......TSHC CS
   PF12895.2   2 qhnyknAlflaekllaespk.....dpeda....ylyalAlclylngeykrAyellrk......leld 54 
                 q+ y++A+ +++++la + +         +     l +lAl l ++++yk+A  l ++       ++ 
  MMETSP0890-20130614|3914_1 920 QGKYDEAEPMYRRALAIDENnfgpmH---VdvacDLNNLALLLKNQNKYKEARSLMQRaldivvAKFP 984
                 789**************987443320...2456666678*************9999887655555555 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.4     2e+03      54      82 ..     597     625 ..     556     628 .. 0.67
   2 ?   -1.9   0.0       7.2   4.3e+03      65      80 ..     650     665 ..     641     667 .. 0.85
   3 ?    6.8   0.1     0.013       7.8      42      81 ..     668     708 ..     651     709 .. 0.71
   4 ?    5.9   0.0     0.025        15      47      81 ..     715     750 ..     704     753 .. 0.67
   5 ?    0.7   0.0       1.1   6.6e+02      65      81 ..     776     792 ..     761     795 .. 0.86
   6 ?    4.3   0.0     0.084        50      42      81 ..     794     834 ..     784     837 .. 0.75
   7 ?    3.5   0.0      0.14        84      44      81 ..     838     876 ..     827     880 .. 0.74
   8 !   10.2   0.0    0.0012      0.69      33      82 ..     870     919 ..     865     921 .. 0.78
   9 ?    4.5   0.0     0.069        41      35      75 ..     956     996 ..     951    1000 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3.4
   PF14357.1  54 rlneaverFeaeHPklagtlrnildsLan 82 
                  l    e+F  +H k+a++l++++ +L+ 
  MMETSP0890-20130614|3914_1 597 ALISCEEKFGPNHSKVAKLLNDLAFVLQA 625
                 45557789999999999999999988875 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 7.2
   PF14357.1  65 eHPklagtlrnildsL 80 
                 +HP++a+ l++++  L
  MMETSP0890-20130614|3914_1 650 NHPDVAESLNSLALLL 665
                 7*****9999988665 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.013
   PF14357.1  42 daseaedesl.aerlneaverFeaeHPklagtlrnildsLa 81 
                 +a+ +e ++l +  l+   e+  a+HP++a+ l+n++  L+
  MMETSP0890-20130614|3914_1 668 QAKYDEAKQLfTRALKIREEQLGANHPDVAQSLNNLAALLS 708
                 344444444404455558999***************99987 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.025
   PF14357.1  47 edeslaerlne.averFeaeHPklagtlrnildsLa 81 
                 e e++  r  e   + F  +HP++a+ l+n+++s+ 
  MMETSP0890-20130614|3914_1 715 EAEPMYRRALEiDQKIFGSDHPHVAAGLNNLAESMR 750
                 444444444442445699**************9986 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 1.1
   PF14357.1  65 eHPklagtlrnildsLa 81 
                 +HP++ag l+n++  L 
  MMETSP0890-20130614|3914_1 776 DHPRVAGGLNNLATLLY 792
                 8***********99885 PP

  == domain 6    score: 4.3 bits;  conditional E-value: 0.084
   PF14357.1  42 daseaedeslaerlne.averFeaeHPklagtlrnildsLa 81 
                 + + +e  +l er  +   e+   +HP++a+ l+n++  L 
  MMETSP0890-20130614|3914_1 794 QGQYDEARALHERALKiREEKLGPDHPDVAQSLNNLAGLLR 834
                 566666777777766657889999***********998875 PP

  == domain 7    score: 3.5 bits;  conditional E-value: 0.14
   PF14357.1  44 seaedeslaerlne.averFeaeHPklagtlrnildsLa 81 
                 +  +++++ er  +   e+F  +HP+  + l+n++  L+
  MMETSP0890-20130614|3914_1 838 KRLKSKAFYERALRiREENFGPNHPDFVQSLKNLARLLK 876
                 445555566665554889****************99986 PP

  == domain 8    score: 10.2 bits;  conditional E-value: 0.0012
   PF14357.1  33 dieealeeedaseaedeslaerlneaverFeaeHPklagtlrnildsLan 82 
                 ++ ++l++e + e++++ ++  l+   + F  +HPk+a+tl++++  L+ 
  MMETSP0890-20130614|3914_1 870 NLARLLKDEGKYEETRQCFERALRINEATFGPNHPKVAQTLNELAVLLNG 919
                 67778888666666666666666668899***************999975 PP

  == domain 9    score: 4.5 bits;  conditional E-value: 0.069
   PF14357.1  35 eealeeedaseaedeslaerlne.averFeaeHPklagtlrn 75 
                   +l++ +++ +e  sl++r  +  v++F  + Pk++++l  
  MMETSP0890-20130614|3914_1 956 ALLLKN-QNKYKEARSLMQRALDiVVAKFPPQDPKITMVLTA 996
                 455666.7777889999999999789************9976 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.062        37      39      80 ..     486     527 ..     482     542 .. 0.87
   2 !    8.9   0.0     0.001       0.6      42      83 ..     573     614 ..     567     632 .. 0.83
   3 ?    0.3   0.1      0.39   2.3e+02      40      80 ..     655     695 ..     629     714 .. 0.80
   4 ?    1.3   0.1      0.19   1.2e+02       9      77 ..     670     734 ..     663     752 .. 0.79
   5 ?    4.9   0.0     0.016       9.7      42     104 ..     783     847 ..     775     854 .. 0.77
   6 ?    4.6   0.0      0.02        12      41      92 ..     824     875 ..     818     892 .. 0.75
   7 !    6.8   0.0    0.0042       2.5      35      88 ..     860     913 ..     856     926 .. 0.86
   8 ?   -0.3   0.0      0.59   3.5e+02      40      76 ..     907     943 ..     902     954 .. 0.87
   9 ?    0.9   0.0      0.25   1.5e+02      43      67 ..     952     976 ..     940     986 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.062
   PF04910.9  39 HvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsp 80 
                 + +++++l+ +++ +g f++A  l eraL i +++  p+  +
  MMETSP0890-20130614|3914_1 486 YANSIYNLARLLKDKGLFSEAKLLYERALVIWQDIHGPDHPQ 527
                 57899****************************998888755 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.001
   PF04910.9  42 tLlqlsevyreqgdfevAndlieraLfilervfhpsFsplll 83 
                  Ll+l+e+++ qg + +A +l e aL  +e+ f p+ s++  
  MMETSP0890-20130614|3914_1 573 DLLNLAEMLKDQGYYDKAKALYECALISCEEKFGPNHSKVAK 614
                 59********************************99988655 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.39
   PF04910.9  40 vdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsp 80 
                  ++L  l+ ++ +q ++ +A +l  raL i e+ +  +   
  MMETSP0890-20130614|3914_1 655 AESLNSLALLLITQAKYDEAKQLFTRALKIREEQLGANHPD 695
                 689999**********************8888776655544 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.19
   PF04910.9   9 lyreaenlFyalvdthDpealvnllkkyPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhps 77 
                 +y ea++lF+ ++++ + +    l  ++P    +L +l+ ++  q ++ +A  +  raL i +++f ++
  MMETSP0890-20130614|3914_1 670 KYDEAKQLFTRALKIREEQ----LGANHPDVAQSLNNLAALLSDQANYDEAEPMYRRALEIDQKIFGSD 734
                 6666666666666665432....22678888899*************************9999998876 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.016
   PF04910.9  42 tLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnass..gkirlnyeryeNralfl 104
                 +L +l+ ++ eqg++ +A +l eraL i e+ + p+   + ++ ++  g  r + +r +++a++ 
  MMETSP0890-20130614|3914_1 783 GLNNLATLLYEQGQYDEARALHERALKIREEKLGPDHPDVAQSLNNlaGLLRDQGKRLKSKAFYE 847
                 688999**********************9999977765554444432267777777777888775 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.02
   PF04910.9  41 dtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnassgkirl 92 
                  +L +l+ ++r qg+  ++ ++ eraL i e+ f p+   ++++ ++  ++l
  MMETSP0890-20130614|3914_1 824 QSLNNLAGLLRDQGKRLKSKAFYERALRIREENFGPNHPDFVQSLKNLARLL 875
                 6889999999999999999999999999999999888877777777754444 PP

  == domain 7    score: 6.8 bits;  conditional E-value: 0.0042
   PF04910.9  35 kyPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnassg 88 
                 ++P +v +L +l+ +++ +g++e++ +  eraL i e  f p+  ++ ++ ++ 
  MMETSP0890-20130614|3914_1 860 NHPDFVQSLKNLARLLKDEGKYEETRQCFERALRINEATFGPNHPKVAQTLNEL 913
                 578899**********************************99987766666655 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.59
   PF04910.9  40 vdtLlqlsevyreqgdfevAndlieraLfilervfhp 76 
                   tL  l+ +++ qg++ +A  +  raL i e+ f p
  MMETSP0890-20130614|3914_1 907 AQTLNELAVLLNGQGKYDEAEPMYRRALAIDENNFGP 943
                 579*************************888877765 PP

  == domain 9    score: 0.9 bits;  conditional E-value: 0.25
   PF04910.9  43 LlqlsevyreqgdfevAndlieraL 67 
                 L +l+ ++++q+++++A  l++raL
  MMETSP0890-20130614|3914_1 952 LNNLALLLKNQNKYKEARSLMQRAL 976
                 7889999*****************9 PP

>> PF08631.5  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         7   4.2e+03      99     137 ..     369     404 ..     360     425 .. 0.67
   2 !    8.4   0.0    0.0015      0.87       6      66 ..     458     517 ..     454     552 .. 0.88
   3 ?    1.7   0.1      0.16        95      42      79 ..     662     696 ..     625     758 .. 0.76
   4 ?    0.6   0.0      0.35   2.1e+02      40      79 ..     786     822 ..     776     899 .. 0.71
   5 !    5.8   0.0     0.009       5.4      39      68 ..     953     981 ..     917     997 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 7
   PF08631.5  99 esesvlkakkvlsllesefpnkpelylLaleilkkekgd 137
                 + + v++a +v+  l ++++n  + + Lal+ l+ke  +
  MMETSP0890-20130614|3914_1 369 TGKRVENAHQVSLQLHQDCGN--DAIKLALQCLDKE-PS 404
                 556778888888888888888..7778888888883.33 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0015
   PF08631.5   6 egdldlAehllskakslknlldpdlteeLarvlyniGkellerktdfseavkwlkraldll 66 
                  +d+dlA+  ls a +l++ l  d+te  a+ +yn +  l  +   fsea+ + +ral + 
  MMETSP0890-20130614|3914_1 458 SEDYDLAYEHLSAARDLAEKLYGDNTEHYANSIYNLARLLKDKG-LFSEAKLLYERALVIW 517
                 689*****************************************.************9883 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.16
   PF08631.5  42 Gkellerktdfseavkwlkraldlleklakidqkstel 79 
                 ++ l+ +  +++ea+ +++ral++ e   +++ ++++ 
  MMETSP0890-20130614|3914_1 662 ALLLITQA-KYDEAKQLFTRALKIREE--QLGANHPDV 696
                 55666666.899999999999998544..455555544 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.35
   PF08631.5  40 niGkellerktdfseavkwlkraldlleklakidqkstel 79 
                 n +  l+e+  +++ea  + +ral++ e  +k++ ++++ 
  MMETSP0890-20130614|3914_1 786 NLATLLYEQG-QYDEARALHERALKIRE--EKLGPDHPDV 822
                 6667788888.88888888888888833..5777777765 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.009
   PF08631.5  39 yniGkellerktdfseavkwlkraldllek 68 
                  n ++ l +++ +++ea  +++rald++ +
  MMETSP0890-20130614|3914_1 953 NNLALLLKNQN-KYKEARSLMQRALDIVVA 981
                 57788888888.**************9855 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.4   2.6e+03      24      33 ..     636     645 ..     629     649 .. 0.80
   2 ?    4.2   0.1     0.039        23      16      34 ..     670     688 ..     664     691 .. 0.87
   3 ?    1.8   0.0      0.21   1.3e+02      16      36 ..     712     732 ..     710     734 .. 0.86
   4 ?   -0.5   0.0       1.2   6.8e+02      12      37 ..     750     775 ..     743     776 .. 0.78
   5 ?    3.2   0.1     0.078        47      13      37 ..     793     817 ..     788     818 .. 0.87
   6 ?    1.5   0.0      0.26   1.5e+02      24      37 ..     846     859 ..     846     860 .. 0.90
   7 ?   -0.7   0.0       1.3   7.7e+02      15      35 ..     921     941 ..     920     943 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.4
   PF10516.4  24 lrkaLeLreq 33 
                 +++aL +r+ 
  MMETSP0890-20130614|3914_1 636 SERALSIRQV 645
                 689*****96 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.039
   PF10516.4  16 nFpqAveDlrkaLeLreql 34 
                 ++++A + +++aL++re+ 
  MMETSP0890-20130614|3914_1 670 KYDEAKQLFTRALKIREEQ 688
                 89999999*********85 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.21
   PF10516.4  16 nFpqAveDlrkaLeLreqllp 36 
                 n+++A   +r+aLe+ ++++ 
  MMETSP0890-20130614|3914_1 712 NYDEAEPMYRRALEIDQKIFG 732
                 89999999*******988875 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 1.2
   PF10516.4  12 lEnEnFpqAveDlrkaLeLreqllpp 37 
                  +++++++   ++++a+e+ e+ + p
  MMETSP0890-20130614|3914_1 750 RTQGKYDEVKPNYERAIEIWEKAYGP 775
                 567888888899*******9988876 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.078
   PF10516.4  13 EnEnFpqAveDlrkaLeLreqllpp 37 
                 E++++++A    ++aL++re+ l p
  MMETSP0890-20130614|3914_1 793 EQGQYDEARALHERALKIREEKLGP 817
                 889999999999********97765 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.26
   PF10516.4  24 lrkaLeLreqllpp 37 
                 +++aL +re+++ p
  MMETSP0890-20130614|3914_1 846 YERALRIREENFGP 859
                 89********9976 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 1.3
   PF10516.4  15 EnFpqAveDlrkaLeLreqll 35 
                 +++++A   +r+aL++ e+++
  MMETSP0890-20130614|3914_1 921 GKYDEAEPMYRRALAIDENNF 941
                 689999999*****9977666 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.2   1.2e+02      34      97 ..     441     506 ..     428     519 .. 0.75
   2 ?    2.3   0.1      0.19   1.1e+02      75      97 ..     568     590 ..     537     596 .. 0.80
   3 !   10.4   0.2   0.00057      0.34      56     109 ..     591     644 ..     589     647 .. 0.91
   4 ?   -2.0   0.0       4.1   2.4e+03      75     109 ..     652     686 ..     650     690 .. 0.85
   5 ?    0.7   0.0      0.58   3.4e+02      74     107 ..     693     726 ..     684     729 .. 0.86
   6 ?   -3.3   0.0        10   5.9e+03      76      98 ..     737     759 ..     735     770 .. 0.77
   7 ?    2.3   0.0      0.18   1.1e+02      77     100 ..     829     852 ..     811     858 .. 0.80
   8 ?   -1.8   0.0       3.3     2e+03      75     108 ..     862     895 ..     859     900 .. 0.85
   9 ?   -1.7   0.0       3.3     2e+03      66     107 ..     887     936 ..     883     940 .. 0.75
  10 ?   -0.4   0.0       1.3   7.6e+02      75     107 ..     946     978 ..     937     982 .. 0.86
  11 ?   -2.5   0.0       5.8   3.4e+03      14      31 ..     995    1012 ..     994    1014 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.2
   PF04781.7  34 llhelqGe.ifvklakktensdvkftYllasvecfseavlls.slaAlsLfelakelgsvkyYkka 97 
                  lh+  G+ +f+k+   +e+ d+    l a+ + + + +    +  A+s+++la+ l+ +  + +a
  MMETSP0890-20130614|3914_1 441 HLHSNIGNyFFKKIFISSEDYDLAYEHLSAARDLAEKLYGDNtEHYANSIYNLARLLKDKGLFSEA 506
                 5667777624567788899999999999999999888876541555*********99877666555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.19
   PF04781.7  75 slaAlsLfelakelgsvkyYkka 97 
                 ++    L++la++l+ + yY+ka
  MMETSP0890-20130614|3914_1 568 QNYTSDLLNLAEMLKDQGYYDKA 590
                 344788***************98 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00057
   PF04781.7  56 kftYllasvecfseavllsslaAlsLfelakelgsvkyYkkavkkakeaLsvts 109
                 k  Y  a ++c  +    +s  A+ L  la  l+ + yY+ka   + +aLs+ +
  MMETSP0890-20130614|3914_1 591 KALYECALISCEEKFGPNHSKVAKLLNDLAFVLQAQGYYDKAKVHSERALSIRQ 644
                 6678888899999999999999*****************************987 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 4.1
   PF04781.7  75 slaAlsLfelakelgsvkyYkkavkkakeaLsvts 109
                 ++ A sL  la  l  +  Y++a +   +aL + +
  MMETSP0890-20130614|3914_1 652 PDVAESLNSLALLLITQAKYDEAKQLFTRALKIRE 686
                 67899999999999999999999999988888765 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.58
   PF04781.7  74 sslaAlsLfelakelgsvkyYkkavkkakeaLsv 107
                 +++ A+sL +la  l  +  Y++a    ++aL +
  MMETSP0890-20130614|3914_1 693 HPDVAQSLNNLAALLSDQANYDEAEPMYRRALEI 726
                 6788*******************99888888876 PP

  == domain 6    score: -3.3 bits;  conditional E-value: 10
   PF04781.7  76 laAlsLfelakelgsvkyYkkav 98 
                   A +L +la+ ++ +  Y+++ 
  MMETSP0890-20130614|3914_1 737 HVAAGLNNLAESMRTQGKYDEVK 759
                 67889999999999998888765 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.18
   PF04781.7  77 aAlsLfelakelgsvkyYkkavkk 100
                  A  L   +k+l+s+ +Y++a++ 
  MMETSP0890-20130614|3914_1 829 LAGLLRDQGKRLKSKAFYERALRI 852
                 4667778899**********9975 PP

  == domain 8    score: -1.8 bits;  conditional E-value: 3.3
   PF04781.7  75 slaAlsLfelakelgsvkyYkkavkkakeaLsvt 108
                 ++ ++sL +la+ l+    Y++  +   +aL ++
  MMETSP0890-20130614|3914_1 862 PDFVQSLKNLARLLKDEGKYEETRQCFERALRIN 895
                 56789************99999998888888775 PP

  == domain 9    score: -1.7 bits;  conditional E-value: 3.3
   PF04781.7  66 cfseavllssla........AlsLfelakelgsvkyYkkavkkakeaLsv 107
                 cf  a ++ + +        A+ L ela  l+++  Y++a    ++aL +
  MMETSP0890-20130614|3914_1 887 CFERALRINEATfgpnhpkvAQTLNELAVLLNGQGKYDEAEPMYRRALAI 936
                 555555555555555566669*************9999998888888876 PP

  == domain 10    score: -0.4 bits;  conditional E-value: 1.3
   PF04781.7  75 slaAlsLfelakelgsvkyYkkavkkakeaLsv 107
                  + A  L +la  l+ +  Yk+a +  ++aL +
  MMETSP0890-20130614|3914_1 946 VDVACDLNNLALLLKNQNKYKEARSLMQRALDI 978
                 46689999****************999999976 PP

  == domain 11    score: -2.5 bits;  conditional E-value: 5.8
   PF04781.7   14 kALeliedlisdhgkdek 31  
                   AL++i++ i + +k+++
  MMETSP0890-20130614|3914_1  995 TALNVIDKQIRNSRKEKN 1012
                  59*********9999986 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.9   1.7e+03      10      29 ..     162     181 ..     158     185 .. 0.84
   2 ?    2.7   0.0      0.17     1e+02       1      21 [.     348     368 ..     348     372 .. 0.92
   3 ?    1.1   0.0      0.56   3.3e+02      31      66 ..     615     655 ..     609     662 .. 0.84
   4 ?   -0.1   0.1       1.3   7.6e+02      25      64 ..     651     695 ..     622     707 .. 0.70
   5 ?    5.8   0.1     0.019        11      35      67 ..     787     824 ..     763     830 .. 0.87
   6 ?    2.1   0.0      0.26   1.5e+02       6      58 ..     876     936 ..     862     942 .. 0.79
   7 ?    2.0   0.0      0.28   1.6e+02      35      72 ..     955     997 ..     944     998 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.9
   PF13371.1  10 dferALavverllllaPddp 29 
                 ++++++  +er+ +l P+  
  MMETSP0890-20130614|3914_1 162 QNDKLISDAERIRRLRPHVI 181
                 78999999********9955 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.17
   PF13371.1   1 LkaiylreedferALavverl 21 
                 L+ +++++++++ A  +ve+l
  MMETSP0890-20130614|3914_1 348 LRVAAQSQDQWALAVTIVEML 368
                 68899**************98 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.56
   PF13371.1  31 erRDrGlllaqlgclaaAaedLeafl.....elcpdapdae 66 
                 ++ D +++l+ +g +  A    e++l     +l p++pd++
  MMETSP0890-20130614|3914_1 615 LLNDLAFVLQAQGYYDKAKVHSERALsirqvQLGPNHPDVA 655
                 67899*************99999999888888888888765 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 1.3
   PF13371.1  25 aPddpyerRDrGlllaqlgclaaAaedLeaflelcp.....dapd 64 
                 +Pd ++ +   +lll  +  + +A + ++++l+  +     ++pd
  MMETSP0890-20130614|3914_1 651 HPDVAESLNSLALLLITQAKYDEAKQLFTRALKIREeqlgaNHPD 695
                 566777777889999999999999999999995544333345555 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.019
   PF13371.1  35 rGlllaqlgclaaAaedLeafl.....elcpdapdael 67 
                  + ll+++g++ +A++  e++l     +l pd+pd+++
  MMETSP0890-20130614|3914_1 787 LATLLYEQGQYDEARALHERALkireeKLGPDHPDVAQ 824
                 689*******************8888888889999876 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.26
   PF13371.1   6 lreedferALavverllll........aPddpyerRDrGlllaqlgclaaAaedLeaflel 58 
                   e+++e++ ++ er l++        +P  ++ + + + ll  +g + +A   ++++l+ 
  MMETSP0890-20130614|3914_1 876 KDEGKYEETRQCFERALRIneatfgpnHPKVAQTLNELAVLLNGQGKYDEAEPMYRRALAI 936
                 5678889999999999998888887777778888888888888888888887777777765 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.28
   PF13371.1  35 rGlllaqlgclaaAaedLeafl.....elcpdapdaeliraql 72 
                  +lll  ++ + +A+  ++++l     +  p++p + ++   l
  MMETSP0890-20130614|3914_1 955 LALLLKNQNKYKEARSLMQRALdivvaKFPPQDPKITMVLTAL 997
                 699*******************777744444888888877666 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.094        56       3      27 ..     490     514 ..     488     516 .. 0.91
   2 ?    3.9   0.4      0.13        76       5      28 ..     534     557 ..     534     559 .. 0.88
   3 ?    3.0   0.6      0.26   1.6e+02       3      24 ..     574     595 ..     573     595 .. 0.93
   4 ?    4.0   0.2      0.12        73       6      28 ..     661     683 ..     660     685 .. 0.85
   5 ?    1.8   0.1      0.63   3.7e+02       7      28 ..     705     725 ..     702     726 .. 0.77
   6 ?    1.4   0.0       0.8   4.8e+02       5      28 ..     744     767 ..     744     772 .. 0.63
   7 ?    7.7   0.1    0.0081       4.8       5      22 ..     786     803 ..     786     810 .. 0.85
   8 ?   -1.6   0.1       7.3   4.3e+03       8      28 ..     831     851 ..     828     852 .. 0.72
   9 ?    4.7   0.0     0.074        44       5      28 ..     870     893 ..     870     895 .. 0.90
  10 ?    2.3   0.0      0.44   2.6e+02       7      27 ..     914     934 ..     912     937 .. 0.80
  11 ?    6.0   0.2     0.029        17       5      28 ..     954     977 ..     954     978 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlealerli 27 
                  y+la++++  g ++eA+ ++er +
  MMETSP0890-20130614|3914_1 490 IYNLARLLKDKGLFSEAKLLYERAL 514
                 6*********88*********9976 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la++++++g+ deA++ ++  i+
  MMETSP0890-20130614|3914_1 534 YLAKLLRAQGKDDEAKRQYDLAIE 557
                 5899*************9987775 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAleale 24 
                 l++la+ ++ +g +d+A++++e
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYE 595
                 799**9999999*******997 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                 lal+++ + ++deA++++ r +k
  MMETSP0890-20130614|3914_1 661 LALLLITQAKYDEAKQLFTRALK 683
                 688888766**********9987 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerlik 28 
                 al+ +++ ++deA  +++r ++
  MMETSP0890-20130614|3914_1 705 ALLSDQA-NYDEAEPMYRRALE 725
                 4555566.**********9886 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la+s++ +g++de +  +er i+
  MMETSP0890-20130614|3914_1 744 NLAESMRTQGKYDEVKPNYERAIE 767
                 588899987666665555555554 PP

  == domain 7    score: 7.7 bits;  conditional E-value: 0.0081
                 HHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlea 22 
                 +la ++y++g++deA+++
  MMETSP0890-20130614|3914_1 786 NLATLLYEQGQYDEARAL 803
                 6999****9******986 PP

  == domain 8    score: -1.6 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   8 lsyyklgdtdeAlealerlik 28 
                  +++ +g+  ++++ +er ++
  MMETSP0890-20130614|3914_1 831 GLLRDQGKRLKSKAFYERALR 851
                 445556688999999*99875 PP

  == domain 9    score: 4.7 bits;  conditional E-value: 0.074
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la++++  g+++e ++ +er ++
  MMETSP0890-20130614|3914_1 870 NLARLLKDEGKYEETRQCFERALR 893
                 6999999988***********986 PP

  == domain 10    score: 2.3 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   7 alsyyklgdtdeAlealerli 27 
                 a ++  +g++deA  +++r +
  MMETSP0890-20130614|3914_1 914 AVLLNGQGKYDEAEPMYRRAL 934
                 55555589**********987 PP

  == domain 11    score: 6.0 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +lal++++++++ eA+ +++r ++
  MMETSP0890-20130614|3914_1 954 NLALLLKNQNKYKEARSLMQRALD 977
                 699*****99***********985 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.4     2e+03      41      63 ..     574     596 ..     535     635 .. 0.56
   2 ?    2.7   0.1      0.19   1.1e+02      16      30 ..     712     726 ..     697     767 .. 0.65
   3 ?    0.8   0.1      0.71   4.2e+02      14      66 ..     752     809 ..     739     875 .. 0.67
   4 ?    6.3   0.0     0.014       8.3       4      29 ..     910     935 ..     907     985 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3.4
   PF12688.2  41 tiqlaSsLRnlGrveeslallea 63 
                  + la  L+  G  +++ al e 
  MMETSP0890-20130614|3914_1 574 LLNLAEMLKDQGYYDKAKALYEC 596
                 34555555555555555555443 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.19
   PF12688.2  16 eeakAvplYrrAlaa 30 
                 + ++A+p+YrrAl+ 
  MMETSP0890-20130614|3914_1 712 NYDEAEPMYRRALEI 726
                 5689********974 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.71
   PF12688.2  14 tGeeakAvplYrrAla.....aGLagarrrratiqlaSsLRnlGrveeslalleaela 66 
                  G+ ++  p Y+rA++      G +  r       la  L   G+ +e+ al e++l+
  MMETSP0890-20130614|3914_1 752 QGKYDEVKPNYERAIEiwekaYGPDHPRVAGGLNNLATLLYEQGQYDEARALHERALK 809
                 5666666666666653221113445555555555667777777777777777776665 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.014
   PF12688.2   4 lferagarDstGeeakAvplYrrAla 29 
                 l e a      G+ ++A+p+YrrAla
  MMETSP0890-20130614|3914_1 910 LNELAVLLNGQGKYDEAEPMYRRALA 935
                 55677777889*************98 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4      0.13        79       6      20 ..     618     632 ..     616     633 .. 0.93
   2 ?   -0.0   0.0       1.2   7.3e+02      13      32 ..     667     684 ..     656     687 .. 0.68
   3 ?   -0.6   0.0       1.9   1.1e+03       8      33 ..     704     727 ..     702     729 .. 0.74
   4 ?    9.9   0.1   0.00092      0.55       7      32 ..     787     810 ..     784     814 .. 0.79
   5 ?    6.3   0.0     0.012       7.3      14      36 .]     920     940 ..     914     940 .. 0.95
   6 ?   -2.1   0.0       5.5   3.3e+03      13      23 ..     961     971 ..     955     973 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.13
                 HHHHHHHHTT-HHHH CS
   PF07720.7   6 slAaefynkkkyqeA 20 
                 +lA+++++++ y++A
  MMETSP0890-20130614|3914_1 618 DLAFVLQAQGYYDKA 632
                 58************9 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 1.2
                 HTT-HHHHHHH..HHHHHHH CS
   PF07720.7  13 nkkkyqeArelfsYallail 32 
                  + ky+eA +lf    + ++
  MMETSP0890-20130614|3914_1 667 TQAKYDEAKQLF--TRALKI 684
                 5669******94..466665 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.9
                 HHHHHHTT-HHHHHHH..HHHHHHH- CS
   PF07720.7   8 AaefynkkkyqeArelfsYallaild 33 
                 Aa + ++ +y+eA+    Y+ +  +d
  MMETSP0890-20130614|3914_1 704 AALLSDQANYDEAEPM--YRRALEID 727
                 666667779*****99..87777666 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00092
                 HHHHHHHTT-HHHHHHH..HHHHHHH CS
   PF07720.7   7 lAaefynkkkyqeArelfsYallail 32 
                 lA  +y +++y+eAr l   + + ++
  MMETSP0890-20130614|3914_1 787 LATLLYEQGQYDEARAL--HERALKI 810
                 78899**********98..4555555 PP

  == domain 5    score: 6.3 bits;  conditional E-value: 0.012
                 TT-HHHHHHH..HHHHHHH-TT- CS
   PF07720.7  14 kkkyqeArelfsYallaildken 36 
                 ++ky+eA+    Y+ + ++d++n
  MMETSP0890-20130614|3914_1 920 QGKYDEAEPM--YRRALAIDENN 940
                 8*********..99*****9998 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 5.5
                 HTT-HHHHHHH CS
   PF07720.7  13 nkkkyqeArel 23 
                 n+ ky eAr l
  MMETSP0890-20130614|3914_1 961 NQNKYKEARSL 971
                 889*****977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.82u 0.46s 00:00:02.28 Elapsed: 00:00:01.72
# Mc/sec: 1415.52
//
Query:       MMETSP0890-20130614|3938_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-18   65.8   0.4    2.4e-18   65.1   0.3    1.4  1  PF11211.3  Protein of unknown function (DUF2997)
     0.0021   17.6   0.1     0.0051   16.4   0.0    1.6  2  PF01913.13 Formylmethanofuran-tetrahydromethanopterin formyltransferase
  ------ inclusion threshold ------
       0.04   13.6   0.2      0.053   13.2   0.1    1.4  1  PF07194.6  P2 response regulator binding domain


Domain annotation for each model (and alignments):
>> PF11211.3  Protein of unknown function (DUF2997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.3   5.3e-22   2.4e-18       1      48 []      22      69 ..      22      69 .. 0.98

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 5.3e-22
   PF11211.3  1 IefrIrpDGrVeeeVeGvkGssCleateeLEeaLGtvesreltpEyyq 48
                ++frI+pDGrVee+V G++G++C+++teeL e+LG+v ++ +t E++q
  MMETSP0890-20130614|3938_1 22 VKFRIHPDGRVEEQVIGIQGADCTKVTEELNEKLGEVIDTAPTEEMFQ 69
                68********************************************98 PP

>> PF01913.13  Formylmethanofuran-tetrahydromethanopterin formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.2   9.3e+02     115     132 ..       7      24 ..       3      27 .. 0.78
   2 !   16.4   0.0   1.1e-06    0.0051      65     115 ..      27      78 ..      20      86 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.2
                 BE----GGGGG----EEE CS
  PF01913.13 115 iklgkklrffgDgyeisk 132
                 ++ +++lr +gD  +++ 
  MMETSP0890-20130614|3938_1   7 LRYNRQLRVYGDVIQVKF 24 
                 567889999**9999875 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.1e-06
                 S-------EEE.EEESS----HHHHHHH----STTSTT-EEE---TT-SS-B CS
  PF01913.13  65 tpDgRpGvsil.lfakskkklekqlleRigqcvLtapttavfdgleeaeeki 115
                  pDgR   +++ + + +  k++++l+e++g+ + tapt ++f++  + +e+ 
  MMETSP0890-20130614|3938_1  27 HPDGRVEEQVIgIQGADCTKVTEELNEKLGEVIDTAPTEEMFQEKVTVDETN 78 
                 69***876655166999*************************9984444444 PP

>> PF07194.6  P2 response regulator binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.2e-05     0.053      16      54 ..      40      80 ..      18      84 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.2e-05
   PF07194.6 16 ksvRaflvleaLee.lGeiiksvPsveeiedek.fdkefev 54
                +++++  v e+L+e lGe+i++ P++e  ++   +d++ +v
  MMETSP0890-20130614|3938_1 40 QGADCTKVTEELNEkLGEVIDTAPTEEMFQEKVtVDETNQV 80
                56778889999965489*******88777444314666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 292.89
//
Query:       MMETSP0890-20130614|3936_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-30  105.7   0.2      2e-15   56.7   0.0    2.5  2  PF12796.2  Ankyrin repeats (3 copies)
      4e-30  101.9   3.7    9.4e-11   40.8   0.1    5.3  5  PF00023.25 Ankyrin repeat
    1.7e-20   72.8   0.2    1.1e-10   41.5   0.0    3.6  3  PF13637.1  Ankyrin repeats (many copies)
    4.7e-19   66.4   0.6      3e-06   26.8   0.0    5.2  5  PF13606.1  Ankyrin repeat
    1.2e-17   63.4   1.9    1.9e-08   34.1   0.0    3.7  4  PF13857.1  Ankyrin repeats (many copies)
    3.9e-06   26.4   0.0      1e-05   25.1   0.0    1.7  1  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   8.8e-19     2e-15      25      86 ..     345     417 ..     293     420 .. 0.78
   2 !   46.8   0.1   1.1e-15   2.5e-12       2      73 ..     428     503 ..     427     510 .. 0.93

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 8.8e-19
   PF12796.2  25 l...........getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                 +           g+tpLhlA+++g++e+v +Lle+ga+vn  d  g+tpL  Av ngh  ++  Ll++g ++ 
  MMETSP0890-20130614|3936_1 345 MvpievvpgdydGRTPLHLASAQGHVECVLVLLEHGANVNPIDRFGRTPLQEAVLNGHDQIITTLLQRGGELK 417
                 133333444455899*****************************************************98876 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 1.1e-15
   PF12796.2   2 hlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghle 73 
                 + A  +g++++vk  l++ga+++      +t+L+l a+ gn++++klL+++ga   akd  g+t+   A+++gh+ 
  MMETSP0890-20130614|3936_1 428 CDASAQGSYDTVKRYLDAGASPNAadydLRTALMLSAAEGNTQVCKLLIQRGATKVAKDRWGHTAYDEAIKHGHTG 503
                 568899*****************99999999*******************************************75 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1   4.1e-14   9.4e-11       1      32 [.     356     387 ..     356     388 .. 0.95
   2 !   21.2   0.0   6.5e-08   0.00015       2      28 ..     390     416 ..     389     418 .. 0.94
   3 !   11.8   0.0   6.2e-05      0.14       9      32 ..     430     453 ..     427     454 .. 0.93
   4 !   24.4   0.0   6.6e-09   1.5e-05       3      27 ..     457     481 ..     455     487 .. 0.88
   5 ?   -0.5   0.0       0.5   1.1e+03       2      22 ..     489     509 ..     488     511 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 4.1e-14
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 dG+TPLHlA+  g++e+v  Ll++GA++n  d
  MMETSP0890-20130614|3936_1 356 DGRTPLHLASAQGHVECVLVLLEHGANVNPID 387
                 8****************************765 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 6.5e-08
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdl 28 
                 G+TPL  A+l+g+ ++++ Ll++G +l
  MMETSP0890-20130614|3936_1 390 GRTPLQEAVLNGHDQIITTLLQRGGEL 416
                 9***********************876 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 6.2e-05
                 HHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                 A+  g+++ vk  l++GA++na d
  MMETSP0890-20130614|3936_1 430 ASAQGSYDTVKRYLDAGASPNAAD 453
                 8999******************98 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 6.6e-09
                 CBHHHHHHHTTHHHHHHHHHHTTSS CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAd 27 
                 +T+L+l a  gn++v+klL+++GA 
  MMETSP0890-20130614|3936_1 457 RTALMLSAAEGNTQVCKLLIQRGAT 481
                 8**********************96 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 0.5
                 SCBHHHHHHHTTHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLl 22 
                 G T+   A+++g++  +  +l
  MMETSP0890-20130614|3936_1 489 GHTAYDEAIKHGHTGTLANFL 509
                 8899999******98877766 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     5e-14   1.1e-10       1      50 [.     357     406 ..     357     410 .. 0.92
   2 !   24.8   0.0   9.1e-09   2.1e-05       5      54 .]     427     476 ..     424     476 .. 0.95
   3 ?    2.3   0.0       0.1   2.4e+02       1      20 [.     489     508 ..     489     511 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 5e-14
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieil 50 
                 g+t+Lh a ++g++e+v  Lle+g+++n +d++G+t+L+ A+l+g+ +i+
  MMETSP0890-20130614|3936_1 357 GRTPLHLASAQGHVECVLVLLEHGANVNPIDRFGRTPLQEAVLNGHDQII 406
                 69*******************************************96655 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 9.1e-09
   PF13637.1   5 LhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 L  a ++g +++vk  l+ g+++n+ d + +taL + a  gn +++klL+
  MMETSP0890-20130614|3936_1 427 LCDASAQGSYDTVKRYLDAGASPNAADYDLRTALMLSAAEGNTQVCKLLI 476
                 5678889******************************************8 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.1
   PF13637.1   1 gltaLhyaaisgrlelvklL 20 
                 g+ta++ a+++g++ +++  
  MMETSP0890-20130614|3936_1 489 GHTAYDEAIKHGHTGTLANF 508
                 689***********998765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09     3e-06       1      29 [.     356     384 ..     356     384 .. 0.98
   2 !   12.0   0.0   7.6e-05      0.17       1      25 [.     389     413 ..     389     418 .. 0.92
   3 !    7.3   0.0    0.0026       5.9       9      30 .]     430     451 ..     425     451 .. 0.87
   4 !   14.0   0.0   1.7e-05      0.04       2      26 ..     456     480 ..     455     484 .. 0.93
   5 ?   -2.6   0.0       3.9   8.9e+03       2      16 ..     489     503 ..     489     509 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.3e-09
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                 +G+TpLhlA  +g++e v  Lle+ga++n
  MMETSP0890-20130614|3936_1 356 DGRTPLHLASAQGHVECVLVLLEHGANVN 384
                 79*************************98 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 7.6e-05
   PF13606.1   1 nGnTpLhlAasngrielveaLleng 25 
                 +G+TpL  A+ ng+ +++  Ll++g
  MMETSP0890-20130614|3936_1 389 FGRTPLQEAVLNGHDQIITTLLQRG 413
                 59********************998 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0026
   PF13606.1   9 AasngrielveaLlengadina 30 
                 A  +g+++ v+ +l++ga +na
  MMETSP0890-20130614|3936_1 430 ASAQGSYDTVKRYLDAGASPNA 451
                 44589**************996 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 1.7e-05
   PF13606.1   2 GnTpLhlAasngrielveaLlenga 26 
                  +T+L+l a  g+++++++L+++ga
  MMETSP0890-20130614|3936_1 456 LRTALMLSAAEGNTQVCKLLIQRGA 480
                 69*********************98 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 3.9
   PF13606.1   2 GnTpLhlAasngrie 16 
                 G T+ + A+++g++ 
  MMETSP0890-20130614|3936_1 489 GHTAYDEAIKHGHTG 503
                 668888899999974 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.9   1.3e+04      18      34 ..     291     307 ..     288     308 .. 0.77
   2 !   34.1   0.0   8.4e-12   1.9e-08      13      55 ..     354     396 ..     342     397 .. 0.87
   3 !   17.9   0.0   1.1e-06    0.0024       1      45 [.     376     419 ..     376     431 .. 0.91
   4 !   25.4   0.1   4.7e-09   1.1e-05       2      56 .]     443     496 ..     442     496 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 5.9
   PF13857.1  18 tpLhlAakggalevvrl 34 
                 ++Lh  +  g +++ +l
  MMETSP0890-20130614|3936_1 291 NVLHPNCIFGFAQATEL 307
                 78999999988887665 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 8.4e-12
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldl 55 
                 d  g+tpLhlA  +g++e+v  Ll++ga+ n  d +g+t+l+ 
  MMETSP0890-20130614|3936_1 354 DYDGRTPLHLASAQGHVECVLVLLEHGANVNPIDRFGRTPLQE 396
                 44566************************************85 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 1.1e-06
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlr 45 
                 Llehg a+vn  d++g+tpL  A+ +g+ +++  Ll++g  l+l 
  MMETSP0890-20130614|3936_1 376 LLEHG-ANVNPIDRFGRTPLQEAVLNGHDQIITTLLQRGGELKLS 419
                 9****.888889*************************99999875 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 4.7e-09
   PF13857.1   2 lehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 l++g a++na d   +t+L+l a  g+++v++lL+++ga   ++d +g ta+d A
  MMETSP0890-20130614|3936_1 443 LDAG-ASPNAADYDLRTALMLSAAEGNTQVCKLLIQRGATKVAKDRWGHTAYDEA 496
                 8999.66666666677************************************965 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.4e-09     1e-05       5      88 ..      99     198 ..      97     201 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 4.4e-09
                 ----EEE-TT-B--EEEEEEE-EEEEEEE-----EE................EEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHHCC CS
  PF00027.24   5 kkgevifkeGdpadslyiilsGkvkvykndedgkes................ilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrellek 88 
                  kg  i + Gd a++l +il+G++++  +++ g+                   +a+l+ G++fG  +++ + + ++t+va++  +v +++ +d rel  +
  MMETSP0890-20130614|3936_1  99 VKGLEIARTGDLASRLCLILEGRASIEVPTNYGENGqidydeayqteandtcSVATLTVGASFGAESFVCQLQQPFTIVAKSLLRVISFDDADRRELETT 198
                 57778999*************************9889**********************************************99999999988877555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:01.11
# Mc/sec: 1105.35
//
Query:       MMETSP0890-20130614|3942_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-63  209.3   0.0    6.2e-14   51.0   0.0    5.0  5  PF13475.1  Domain of unknown function (DUF4116)
    2.7e-06   26.8   0.0          4    7.1   0.0    5.1  6  PF07892.6  Protein of unknown function (DUF1667)
     0.0018   18.3   7.0         12    6.0   0.0    6.4  8  PF09575.5  Small spore protein J (Spore_SspJ)
  ------ inclusion threshold ------
      0.014   14.8   2.9       0.98    8.9   0.0    3.7  5  PF03259.12 Roadblock/LC7 domain
      0.054   13.1   0.0        0.1   12.3   0.0    1.4  1  PF06496.6  Protein of unknown function (DUF1097)
       0.16   11.7  11.5        1.3    8.7   0.3    3.5  4  PF04402.9  Protein of unknown function (DUF541)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.2e-11     5e-08      20      49 .]       2      31 ..       2      31 .. 0.96
   2 !   47.5   0.0   3.4e-16   7.7e-13       1      49 []      33      81 ..      33      81 .. 0.97
   3 !   44.0   0.0   4.4e-15     1e-11       1      49 []      58     106 ..      58     106 .. 0.98
   4 !   50.5   0.0   3.9e-17   8.9e-14       1      49 []     108     156 ..     108     156 .. 0.98
   5 !   51.0   0.0   2.7e-17   6.2e-14       1      37 [.     158     194 ..     158     196 .. 0.98

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.2e-11
   PF13475.1 20 seeLknDkeivlkAvkqngsalsyaseeLr 49
                s eLknD+eivl+Av  +g al+yas eL+
  MMETSP0890-20130614|3942_1  2 SQELKNDREIVLAAVSEDGRALEYASQELK 31
                679*************************97 PP

  == domain 2    score: 47.5 bits;  conditional E-value: 3.4e-16
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                Dr+++ +av++ g+al+y+s  LknD eivl+Av q+g al+ as  L+
  MMETSP0890-20130614|3942_1 33 DRDFIVAAVTQSGFALQYASQQLKNDHEIVLAAVTQSGLALECASQQLK 81
                9******************************************998886 PP

  == domain 3    score: 44.0 bits;  conditional E-value: 4.4e-15
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 D Eivl+av++ g al+ +s  LknD+ iv +Av  +g al+yas eL+
  MMETSP0890-20130614|3942_1  58 DHEIVLAAVTQSGLALECASQQLKNDRGIVSAAVTHCGWALYYASQELK 106
                 67*********************************************97 PP

  == domain 4    score: 50.5 bits;  conditional E-value: 3.9e-17
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 Dr i+l+av++ g al y+seeL+nD+eivl+Av q g+al yas eL+
  MMETSP0890-20130614|3942_1 108 DRAIALAAVSQVGRALGYASEELTNDREIVLAAVTQEGIALFYASQELK 156
                 889********************************************97 PP

  == domain 5    score: 51.0 bits;  conditional E-value: 2.7e-17
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqn 37 
                 DrEivl+a++++g alky+s +LknD+eivl+Av +n
  MMETSP0890-20130614|3942_1 158 DREIVLAAITQDGDALKYASQRLKNDREIVLAAVTKN 194
                 9*********************************988 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.5     8e+03       9      22 ..       3      16 ..       2      18 .. 0.78
   2 !    6.0   0.0    0.0038       8.7       2      24 ..      21      43 ..      20      48 .. 0.87
   3 ?    3.9   0.0     0.017        39       4      33 ..      48      77 ..      46      83 .. 0.86
   4 ?   -1.2   0.0      0.67   1.5e+03       5      23 ..      99     117 ..      97     124 .. 0.77
   5 !    7.1   0.0    0.0017         4       2      29 ..     121     148 ..     120     168 .. 0.75
   6 ?    4.2   0.0     0.014        31       6      35 ..     150     179 ..     146     194 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.5
   PF07892.6  9 keltnpkriltstV 22
                +el+n + i+ + V
  MMETSP0890-20130614|3942_1  3 QELKNDREIVLAAV 16
                78899999988777 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0038
   PF07892.6  2 rGeeYakkeltnpkriltstVkv 24
                r  eYa +el+n ++ +++ V  
  MMETSP0890-20130614|3942_1 21 RALEYASQELKNDRDFIVAAVTQ 43
                789*************9999975 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.017
   PF07892.6  4 eeYakkeltnpkriltstVkveggelplvp 33
                 +Ya ++l+n   i+ + V  +g  l++ +
  MMETSP0890-20130614|3942_1 48 LQYASQQLKNDHEIVLAAVTQSGLALECAS 77
                58*****************99888777765 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.67
   PF07892.6   5 eYakkeltnpkriltstVk 23 
                  Ya +el++ + i  + V+
  MMETSP0890-20130614|3942_1  99 YYASQELKKDRAIALAAVS 117
                 5999999998888777665 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.0017
   PF07892.6   2 rGeeYakkeltnpkriltstVkveggel 29 
                 r   Ya +eltn + i+ + V  eg  l
  MMETSP0890-20130614|3942_1 121 RALGYASEELTNDREIVLAAVTQEGIAL 148
                 6678*****************9988765 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.014
   PF07892.6   6 YakkeltnpkriltstVkveggelplvpVk 35 
                 Ya +el++ + i+ + +  +g  l+  + +
  MMETSP0890-20130614|3942_1 150 YASQELKSDREIVLAAITQDGDALKYASQR 179
                 899999999999999998888887777654 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.9   1.1e+04      27      33 ..       2       8 ..       2       9 .. 0.80
   2 !    6.0   0.0    0.0052        12      22      33 ..      22      33 ..      18      34 .. 0.92
   3 ?    1.1   0.0      0.19   4.3e+02      22      33 ..      47      58 ..      40      59 .. 0.83
   4 ?    3.8   0.0     0.025        58      22      33 ..      72      83 ..      65      84 .. 0.90
   5 ?    0.3   0.0      0.33   7.5e+02      22      33 ..      97     108 ..      95     110 .. 0.84
   6 ?    0.2   0.0      0.35     8e+02      18      33 ..     118     133 ..     115     134 .. 0.89
   7 ?   -0.0   0.0      0.41   9.3e+02      23      33 ..     148     158 ..     143     159 .. 0.84
   8 ?    1.4   0.0      0.15   3.3e+02      22      33 ..     172     183 ..     164     185 .. 0.65

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.9
   PF09575.5 27 gkaLkgD 33
                +++Lk+D
  MMETSP0890-20130614|3942_1  2 SQELKND 8 
                6889988 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0052
   PF09575.5 22 aLEdAgkaLkgD 33
                aLE A+++Lk+D
  MMETSP0890-20130614|3942_1 22 ALEYASQELKND 33
                9*********99 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.19
   PF09575.5 22 aLEdAgkaLkgD 33
                aL  A+++Lk+D
  MMETSP0890-20130614|3942_1 47 ALQYASQQLKND 58
                688899999988 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.025
   PF09575.5 22 aLEdAgkaLkgD 33
                aLE A+++Lk+D
  MMETSP0890-20130614|3942_1 72 ALECASQQLKND 83
                8*********99 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.33
   PF09575.5  22 aLEdAgkaLkgD 33 
                 aL  A+++Lk D
  MMETSP0890-20130614|3942_1  97 ALYYASQELKKD 108
                 56679*****98 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 0.35
   PF09575.5  18 avdgaLEdAgkaLkgD 33 
                 +v  aL  A+++L +D
  MMETSP0890-20130614|3942_1 118 QVGRALGYASEELTND 133
                 78899********998 PP

  == domain 7    score: -0.0 bits;  conditional E-value: 0.41
   PF09575.5  23 LEdAgkaLkgD 33 
                 L  A+++Lk D
  MMETSP0890-20130614|3942_1 148 LFYASQELKSD 158
                 5669*****98 PP

  == domain 8    score: 1.4 bits;  conditional E-value: 0.15
   PF09575.5  22 aLEdAgkaLkgD 33 
                 aL  A++ Lk+D
  MMETSP0890-20130614|3942_1 172 ALKYASQRLKND 183
                 555666666665 PP

>> PF03259.12  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00043      0.98      21      51 ..      16      48 ..       2      60 .. 0.83
   2 ?   -0.1   0.0      0.28   6.3e+02      21      44 ..      66      91 ..      51     110 .. 0.69
   3 ?    0.1   0.1      0.24   5.4e+02      21      36 ..     116     133 ..      72     146 .. 0.62
   4 ?    0.0   0.0      0.25   5.6e+02      21      46 ..     116     143 ..     103     162 .. 0.72
   5 ?    3.0   0.0     0.029        66      19      49 ..     166     196 ..     150     197 .] 0.72

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00043
  PF03259.12 21 vskdGlvlas..stldnddadrlAalasgllaa 51
                vs+dG +l++  + l+nd+  ++Aa++++ +a+
  MMETSP0890-20130614|3942_1 16 VSEDGRALEYasQELKNDRDFIVAAVTQSGFAL 48
                79************************9986654 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.28
  PF03259.12 21 vskdGlvlas..stldnddadrlAal 44
                v++ Gl+l++  ++l+nd+    Aa+
  MMETSP0890-20130614|3942_1 66 VTQSGLALECasQQLKNDRGIVSAAV 91
                45567777776666666666555555 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.24
  PF03259.12  21 vskdGlvlas..stldnd 36 
                 vs+ G +l +  + l+nd
  MMETSP0890-20130614|3942_1 116 VSQVGRALGYasEELTND 133
                 333344444434444455 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.25
  PF03259.12  21 vskdGlvlas..stldnddadrlAalas 46 
                 vs+ G +l +  + l+nd+   lAa+++
  MMETSP0890-20130614|3942_1 116 VSQVGRALGYasEELTNDREIVLAAVTQ 143
                 4555666666667777777777777765 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.029
  PF03259.12  19 lvvskdGlvlasstldnddadrlAalasgll 49 
                 +  + d l  as+ l+nd+   lAa++++++
  MMETSP0890-20130614|3942_1 166 ITQDGDALKYASQRLKNDREIVLAAVTKNFM 196
                 3346666777779************999876 PP

>> PF06496.6  Protein of unknown function (DUF1097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.4e-05       0.1      56     140 ..      45     132 ..      36     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.4e-05
   PF06496.6  56 alliillsgllagagplalailvgivaflmvllakl.pllsfiPgaf..lGfastfaalakldgdwlvvllsl.lvgallGyasealgs 140
                 +++  ++s++l++  +++la+++  + +l ++ ++l +   ++ +a+  +G+a + a+ ++l++d +++l+++  vg +lGyase l++
  MMETSP0890-20130614|3942_1  45 GFALQYASQQLKNDHEIVLAAVTQSGLALECASQQLkNDRGIVSAAVthCGWALYYAS-QELKKDRAIALAAVsQVGRALGYASEELTN 132
                 56677788888777999999999999999999999955567777776558********.55555555554444269*********9987 PP

>> PF04402.9  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2      0.01        23       8      53 ..       2      47 ..       1      75 [. 0.81
   2 ?   -1.5   0.0      0.73   1.7e+03       7      24 ..      76      93 ..      74      95 .. 0.87
   3 ?    8.7   0.3   0.00056       1.3       7      52 ..     101     146 ..      99     148 .. 0.96
   4 ?    4.2   0.2     0.013        31       7      49 ..     151     193 ..     148     195 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.01
   PF04402.9  8 evevkpDratlslavesegedaaeaaeelservnrvlaalkkagie 53
                ++e k+Dr ++  av+++g  ++ a +el ++++ ++aa+++ g+ 
  MMETSP0890-20130614|3942_1  2 SQELKNDREIVLAAVSEDGRALEYASQELKNDRDFIVAAVTQSGFA 47
                5788999999999999999999999999999999999999888854 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.73
   PF04402.9  7 aevevkpDratlslaves 24
                a+++ k+Dr ++s av++
  MMETSP0890-20130614|3942_1 76 ASQQLKNDRGIVSAAVTH 93
                789999********9986 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00056
   PF04402.9   7 aevevkpDratlslavesegedaaeaaeelservnrvlaalkkagi 52 
                 a++e k Dra+   av+  g  ++ a eel+++++ vlaa+++ gi
  MMETSP0890-20130614|3942_1 101 ASQELKKDRAIALAAVSQVGRALGYASEELTNDREIVLAAVTQEGI 146
                 8999**************************************9998 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.013
   PF04402.9   7 aevevkpDratlslavesegedaaeaaeelservnrvlaalkk 49 
                 a++e k+Dr ++  a++ +g  ++ a ++l ++++ vlaa++k
  MMETSP0890-20130614|3942_1 151 ASQELKSDREIVLAAITQDGDALKYASQRLKNDREIVLAAVTK 193
                 8999***********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.76
# Mc/sec: 621.16
//
Query:       MMETSP0890-20130614|3957_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.37s 00:00:00.63 Elapsed: 00:00:00.63
# Mc/sec: 167.36
//
Query:       MMETSP0890-20130614|3958_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.12   12.0   0.0    1.1  1  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.5e-06      0.12      22      53 ..      15      46 ..       9      55 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.5e-06
  PF06743.10 22 feklasalereLdsispelllnlvwSlclley 53
                +++la+a+  +L+ ++ ++l n+ w+++ ++ 
  MMETSP0890-20130614|3958_1 15 MKALATACLNSLNDFEAQHLANVAWAYATIDI 46
                67899**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 209.68
//
Query:       MMETSP0890-20130614|3955_1  [L=931]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       685  (0.0501024); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.29u 0.37s 00:00:01.66 Elapsed: 00:00:01.20
# Mc/sec: 1859.17
//
Query:       MMETSP0890-20130614|3948_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-19   70.0   2.2    6.4e-12   45.5   0.2    1.7  2  PF12796.2  Ankyrin repeats (3 copies)
    9.3e-12   44.0   0.3    2.9e-06   26.6   0.0    3.4  3  PF00023.25 Ankyrin repeat
    5.5e-10   38.3   0.2    5.5e-05   22.9   0.0    3.5  3  PF13606.1  Ankyrin repeat
    1.5e-09   37.9   1.2    1.5e-06   28.3   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    2.8e-08   33.6   1.5    4.5e-05   23.4   0.1    2.8  3  PF13857.1  Ankyrin repeats (many copies)
     0.0027   18.0   0.0     0.0093   16.3   0.0    1.9  2  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   3.6e-11   8.2e-08      27      86 ..     373     433 ..     355     435 .. 0.81
   2 !   45.5   0.2   2.8e-15   6.4e-12       1      83 [.     376     463 ..     376     466 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.6e-11
   PF12796.2  27 etpLhlAaeagnle.ivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                  t+Lh+Aa++++++  +++  ++  dvn+ d++ +tpLh A+r+ +  ++++L+++gad+ 
  MMETSP0890-20130614|3948_1 373 PTALHHAAAQDDVKaLLDAVRKNPLDVNSVDENLWTPLHEAARSASPTIARILVSNGADLG 433
                 35******99997725566666667*********************************986 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 2.8e-15
   PF12796.2   1 LhlAaengnlelvklLlekg.advdl.get...pLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekga 83 
                 Lh+Aa +++++++   + k+  dv+   e+   pLh Aa++ +  i+++L+++gad+ ak+  g t+L lA r+++++lv++L + ga
  MMETSP0890-20130614|3948_1 376 LHHAAAQDDVKALLDAVRKNpLDVNSvDENlwtPLHEAARSASPTIARILVSNGADLGAKTVGGATALWLAKRHNNFKLVEYLQDLGA 463
                 899***999998877777554666665366788**************************************************98886 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.037        85       4      14 ..     374     384 ..     374     403 .. 0.81
   2 !   26.6   0.0   1.3e-09   2.9e-06       3      32 ..     407     436 ..     405     437 .. 0.95
   3 !   10.5   0.0   0.00016      0.37       2      26 ..     439     463 ..     438     465 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.037
                 BHHHHHHHTTH CS
  PF00023.25   4 TPLHlAalrgn 14 
                 T+LH Aa  ++
  MMETSP0890-20130614|3948_1 374 TALHHAAAQDD 384
                 9******9875 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.3e-09
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 +TPLH Aa++ ++ +++ L+s+GAdl a++
  MMETSP0890-20130614|3948_1 407 WTPLHEAARSASPTIARILVSNGADLGAKT 436
                 8**************************998 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00016
                 SCBHHHHHHHTTHHHHHHHHHHTTS CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGA 26 
                 G T+L lA +++n + v++L + GA
  MMETSP0890-20130614|3948_1 439 GATALWLAKRHNNFKLVEYLQDLGA 463
                 88******************99998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0056        13       4      29 ..     374     400 ..     373     401 .. 0.62
   2 !   22.9   0.0   2.4e-08   5.5e-05       1      28 [.     405     432 ..     405     434 .. 0.94
   3 ?    5.3   0.0     0.011        25       3      26 ..     440     463 ..     438     467 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0056
   PF13606.1   4 TpLhlAasngrielveaLle....ngadin 29 
                 T+Lh+Aa +  +   +aLl+    n+ d+n
  MMETSP0890-20130614|3948_1 374 TALHHAAAQDDV---KALLDavrkNPLDVN 400
                 9*****999754...444442222466666 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.4e-08
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                 n +TpLh Aa++ ++ ++++L++ngad+
  MMETSP0890-20130614|3948_1 405 NLWTPLHEAARSASPTIARILVSNGADL 432
                 579************************7 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.011
   PF13606.1   3 nTpLhlAasngrielveaLlenga 26 
                  T+L lA ++++ +lve+L + ga
  MMETSP0890-20130614|3948_1 440 ATALWLAKRHNNFKLVEYLQDLGA 463
                 588888889***********9996 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.4e-06    0.0078       3      43 ..     374     415 ..     372     416 .. 0.87
   2 !   28.3   0.0   6.8e-10   1.5e-06       2      53 ..     407     458 ..     406     459 .. 0.98

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.4e-06
   PF13637.1   3 taLhyaaisgrlel.vklLlekgidinrtdesGntaLhiAal 43 
                 taLh+aa++ ++++ +    ++  d+n +de+ +t+Lh Aa+
  MMETSP0890-20130614|3948_1 374 TALHHAAAQDDVKAlLDAVRKNPLDVNSVDENLWTPLHEAAR 415
                 89******999999344555899***************9985 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 6.8e-10
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 +t+Lh aa+s    +++ L+++g+d+ ++   G taL +A +++n++++++L
  MMETSP0890-20130614|3948_1 407 WTPLHEAARSASPTIARILVSNGADLGAKTVGGATALWLAKRHNNFKLVEYL 458
                 79*************************************************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.5e-06    0.0033       6      55 ..     353     412 ..     350     413 .. 0.83
   2 !   23.4   0.1     2e-08   4.5e-05       5      53 ..     395     443 ..     391     446 .. 0.92
   3 !    5.3   0.0    0.0097        22       1      39 [.     425     462 ..     425     465 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
   PF13857.1   6 padvnatdeggn.........tpLhlAakggalevvrlLl.apgadlnlrdsdgltaldl 55 
                 p+++ at ++gn         t+Lh Aa + ++ ++   + +++ d n  d++ +t+l+ 
  MMETSP0890-20130614|3948_1 353 PPSNEATSTKGNknyflpsapTALHHAAAQDDVKALLDAVrKNPLDVNSVDENLWTPLHE 412
                 666666777777777777777********99999999999******************85 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2e-08
   PF13857.1   5 gpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                 +p+dvn+ de+  tpLh Aa+  +++++r+L+ +gadl++++  g tal
  MMETSP0890-20130614|3948_1 395 NPLDVNSVDENLWTPLHEAARSASPTIARILVSNGADLGAKTVGGATAL 443
                 4899999999999***********************************9 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0097
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapg 39 
                 L+++g ad+ a   gg t+L lA ++++  +v++L + g
  MMETSP0890-20130614|3948_1 425 LVSNG-ADLGAKTVGGATALWLAKRHNNFKLVEYLQDLG 462
                 78999.999999999*9***99999*********99554 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.4   9.9e+03      75      89 ..     155     170 ..     122     174 .. 0.65
   2 !   16.3   0.0   4.1e-06    0.0093       2      83 ..     182     250 ..     181     264 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.4
   PF13640.1  75 ksdrslHrvtpv.gaq 89 
                 + d ++ +v+pv +a+
  MMETSP0890-20130614|3948_1 155 TKDAIWDGVRPVlEAW 170
                 4477888888886554 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 4.1e-06
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrv 83 
                 +++ yg+g  l+pHvD+    + ++++++ + ++   +e + le+     ++g a +v+     ++pg+++l++s++++H+ 
  MMETSP0890-20130614|3948_1 182 GIRIYGNGSILNPHVDR---LPLVVSCIMQIDQD--VDEPWPLEVIG---HDGIAYNVT-----LEPGEIALYESSTIIHSR 250
                 6889*************...********665544..4799******8...789999999.....9***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.42s 00:00:01.20 Elapsed: 00:00:00.88
# Mc/sec: 1279.87
//
Query:       MMETSP0890-20130614|3967_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1301.80
//
Query:       MMETSP0890-20130614|3981_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.012   15.0   0.0    1.1  1  PF08892.6 YqcI/YcgG family


Domain annotation for each model (and alignments):
>> PF08892.6  YqcI/YcgG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   9.1e-07     0.012      17      72 ..      30      85 ..      14     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.1e-07
   PF08892.6 17 FPCvfakkalkkgelryvfvedlrseeaakelakaLaeyveesrdlgkrtslvvff 72
                 PC+ a+  + +++ ry + +++++ +a  +++  L +yv+e r+++ r+  +  +
  MMETSP0890-20130614|3981_1 30 RPCLLARVLFVREDQRYCVQRQFGTRRAILQIKTYLDNYVQEERKKDPRQGWLFRT 85
                5*******************************************999665544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 398.16
//
Query:       MMETSP0890-20130614|3972_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-32  113.1   0.0    2.4e-32  112.3   0.0    1.4  1  PF01189.12 NOL1/NOP2/sun family
    3.5e-05   23.3   0.0    7.6e-05   22.2   0.0    1.5  1  PF09445.5  RNA cap guanine-N2 methyltransferase
    0.00018   21.4   0.1    0.00057   19.7   0.0    1.9  2  PF13659.1  Methyltransferase domain
     0.0048   16.7   0.0      0.011   15.6   0.0    1.6  1  PF01728.14 FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.025   14.5   0.0        0.2   11.6   0.0    2.4  2  PF13636.1  pre-rRNA processing and ribosome biogenesis


Domain annotation for each model (and alignments):
>> PF01189.12  NOL1/NOP2/sun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   8.7e-36   2.4e-32      65     282 ..      52     278 ..      42     279 .. 0.88

  Alignments for each domain:
  == domain 1    score: 112.3 bits;  conditional E-value: 8.7e-36
                 --EEE--TTT---HHHH--..----E......EEEES------HHHHHHH-T.T-EEEEE-SSCCCHHHHHHHHHH-----EEE-..-----GGGT-----BSEEEEE------.....--TTT-TTHHHH--TTHHHHHHHHHHHHHHHHGGGB....---.--EEEEES---TTTTHHHHHHHHHH-TT-EE------S--...........--B----.-------EEEEE CS
  PF01189.12  65 gavvvqdassqldaiaLap..qedel......ilDlcaapgGKtthiaelmknegevvAvdrnkqrlkrvaanqqrlGvfnitvve.edatqaaqkllgsefdrilldaPcsgt.....gvirrepkikwlrreadiaqlaelqkelLkaaidlvgidtkeg.gvlvYstCsvlveeneagiklflqkrpdvelvltklseskealkkhrivkanlqllPh.elnedgfffakl 282
                 g  ++q a+s+l++ aL    +++++        D+caapgGK   +   +k++ +++A++++++rl ++a n qr G    tv   +d++q  + l     d +l+daPcsg        i+  + i+  + +++ ++la+ qk lL aa d+     k+g g +vYstCs+ ++ene  +++ l++r+d  l + +++ s  +++    + ++++l+Ph ++n+ gff a +
  MMETSP0890-20130614|3972_1  52 GLLYIQEAASMLPVAALLDdfHGQKTqneqllAVDVCAAPGGKSVQLISTSKEKITLIANEVSSSRLASLAHNVQRCGTCERTVLThGDGGQLLTSLRDL-CDLVLVDAPCSGDtqsrrLNISLAAHIRSAPSPQQTERLAKEQKRLLLAAVDAA----KPGsGLIVYSTCSLDPAENEDIVNAVLNERSDLVLFPPPTAFSHFQTN--ALLPGTVRLWPHdTHNTAGFFCARF 278
                 778999999999999996522344447777799*********************************************9999999989999997777666.**********997222225688899*****************************....9987899****************************9998888887777..6799********5689999*99987 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.8e-08   7.6e-05       3     116 ..      83     197 ..      81     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.8e-08
   PF09445.5   3 vvlDlfaGaGGnviqfanv...fdkviaieinlsklklaqhNaevYgvsdkitlvlgdvfellaklkleeivdlvflSpPwGGpsYkkkekfdlekkleplklekllkasvelskni 116
                 + +D++a  GG+++q+  +     + ia e++ s+l+  +hN +  g  ++  l +gd  +ll++l+ + + dlv++  P  G   +++ + +l  +++ +   +  +   + +k++
  MMETSP0890-20130614|3972_1  83 LAVDVCAAPGGKSVQLISTskeKITLIANEVSSSRLASLAHNVQRCGTCERTVLTHGDGGQLLTSLR-DLC-DLVLVDAPCSGDTQSRRLNISLAAHIRSAPSPQQTERLAKEQKRL 197
                 579***********997764333467999************************************99.555.***********9999999999988888877777666666666665 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.1e-07   0.00057      21     116 ..     101     217 ..      63     218 .. 0.75
   2 ?   -2.3   0.0       1.4   3.8e+03      68      84 ..     233     249 ..     223     272 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.1e-07
   PF13659.1  21 ll..aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrd................lyd...afleaaarllkpg.Gvlvlivp 116
                     ++ l+++E+++ ++a  a+n++r g  er+++++gd  +l + lr   +dlv+ + P  +++++r+ +                  l++   ++l aa ++ kpg G +v+ ++
  MMETSP0890-20130614|3972_1 101 TSkeKITLIANEVSSSRLASLAHNVQRCGTCERTVLTHGDGGQLLTSLR-DLCDLVLVDAPCSGDTQSRRLNISlaahirsapspqqterLAKeqkRLLLAAVDAAKPGsGLIVYSTC 217
                 444568999********************************99997774.89**********77766655544433344444444444443225559999999999999888888877 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
   PF13659.1  68 agsfdlvvtnpPygpra 84 
                  ++ dlv++ pP   ++
  MMETSP0890-20130614|3972_1 233 NERSDLVLFPPPTAFSH 249
                 67889999999976554 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.9e-06     0.011      12     100 ..      56     180 ..      46     247 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.9e-06
  PF01728.14  12 ldekfkll.............kvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpm......aplqgvttlqgditdpstqekilealeegerkvdlvlsDg....................a 100
                 ++e+ ++l             +++++  +vD++aaPGg s  l    +e+ +++a  + +       +++q++ t +  ++++    ++l+ l++    +dlvl D                     +
  MMETSP0890-20130614|3972_1  56 IQEAASMLpvaallddfhgqkTQNEQLLAVDVCAAPGGKSVQLISTSKEKITLIANEVSSSrlaslaHNVQRCGTCERTVLTHGDGGQLLTSLRD---LCDLVLVDApcsgdtqsrrlnislaahirS 180
                 5555554455555555566654445689************999999999**********995555555556666666666777777777777776...9*******9555555555555555444431 PP

>> PF13636.1  pre-rRNA processing and ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.2e-05       0.2       8      66 ..     364     443 ..     356     481 .. 0.70
   2 ?   -3.4   0.0       3.4   9.4e+03      93     102 .]     494     503 ..     494     503 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.2e-05
   PF13636.1   8 lklkllkvlraGlklgel...............kkkrfepshalalalkkeeaknvlelsdeqaeaYlkgeti......e 66 
                 +++ l+++ r+G+kl++                k +r++ +h +ala ++  +  +l  + + + aYl+ge++       
  MMETSP0890-20130614|3972_1 364 PDCLLSQLNRPGVKLLQAfgnkptsnkdlenaiKADRVRCTHDFALAAGHLSSCPLLLHETNHLLAYLRGEDFmfqidsA 443
                 5555556666666666665555555555555558999999999999999999999998899***********95555440 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.4
   PF13636.1  93 rlkNlyPkgl 102
                 ++kN++P++l
  MMETSP0890-20130614|3972_1 494 QIKNQLPRDL 503
                 58*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.39s 00:00:01.25 Elapsed: 00:00:01.13
# Mc/sec: 1082.56
//
Query:       MMETSP0890-20130614|3985_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 247.24
//
Query:       MMETSP0890-20130614|3976_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-06   25.2   0.0    1.7e-05   24.2   0.0    1.6  1  PF10539.4 Development and cell death domain


Domain annotation for each model (and alignments):
>> PF10539.4  Development and cell death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.3e-09   1.7e-05       3      98 ..      36     126 ..      34     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.3e-09
   PF10539.4   3 gviFvcnnktikecfkkqlfGlparridyvkk.ikpglpLFLfnydkkkLhGifeaaskGklnieskaflsegkgetkypaqvrfkvrveCkPLaes 98 
                 g++ +c ++t++e +++ l+G p ++++ +++ ++p + + +f+ d+ +L G f+   +   n++++af +      k+ aqv+++++ + k  a s
  MMETSP0890-20130614|3976_1  36 GYLSICSESTRDEVLSRMLLGAPLSTLSELQRcLDPMTIVCVFDRDTMQLLGPFRCLGRPVANLNKDAFDG------KFQAQVKLTTIGKIKCCARS 126
                 78899******************999998876268888899****************************98......8*******998766555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       884  (0.0646577); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.99
# Mc/sec: 1302.26
//
Query:       MMETSP0890-20130614|4000_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-19   69.1   0.7    1.6e-18   66.3   0.7    1.8  1  PF13424.1  Tetratricopeptide repeat
    6.2e-16   57.6   7.8    1.4e-09   37.3   0.1    2.8  3  PF13374.1  Tetratricopeptide repeat
    4.6e-12   44.8   2.9    2.2e-08   33.2   0.3    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.2e-09   38.4   8.9    9.7e-06   26.0   1.8    1.8  2  PF13432.1  Tetratricopeptide repeat
    5.6e-09   35.3   2.9    8.9e-09   34.7   2.0    1.3  1  PF13414.1  TPR repeat
    8.3e-09   34.4   0.7    7.6e-05   22.1   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.3e-08   33.9   2.6      5e-07   29.0   0.4    2.1  2  PF07719.12 Tetratricopeptide repeat
    2.4e-07   30.3   2.3     0.0052   16.7   0.0    2.4  2  PF13431.1  Tetratricopeptide repeat
    7.2e-06   25.2   0.7     0.0031   17.0   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
      6e-05   23.2   1.8    0.00079   19.7   0.2    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00047   20.1   0.1    0.00072   19.5   0.1    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0007   19.6   0.0      0.017   15.3   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
     0.0067   16.7   0.4       0.16   12.3   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.1   1.2      0.021   13.9   0.1    1.7  3  PF10516.4  SHNi-TPR


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.7   1.6e-21   1.6e-18       1      68 [.       5      73 ..       5      74 .] 0.97

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.6e-21
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAley 68
                hp +a++ln la++l+ +g+yd+A  l+e+al + ++ +g dh d+a++lnnla+l++++ +ydeA+++
  MMETSP0890-20130614|4000_1  5 HPKVAKALNGLAELLFLQGKYDDAKPLFERALRIrQENHGLDHQDVATSLNNLAQLLNEQAKYDEAKPL 73
                899*******************************9999999*************************976 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.85   8.3e+02      37      41 ..       2       6 ..       1       7 [. 0.89
   2 !   37.3   0.1   1.5e-12   1.4e-09       1      42 []       8      49 ..       8      49 .. 0.96
   3 !   24.1   0.1   2.1e-08   2.1e-05       1      25 [.      50      74 .]      50      74 .] 0.96

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.85
   PF13374.1 37 GddHP 41
                G+dHP
  MMETSP0890-20130614|4000_1  2 GPDHP 6 
                9***9 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 1.5e-12
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a aln LA +l+ +g+y++A +l+e+al ir++ +G dH d
  MMETSP0890-20130614|4000_1  8 VAKALNGLAELLFLQGKYDDAKPLFERALRIRQENHGLDHQD 49
                799*******************************99*99987 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 2.1e-08
   PF13374.1  1 taaalnnLAlalrargryeeAlale 25
                +a++lnnLA +l+++ +y+eA +l+
  MMETSP0890-20130614|4000_1 50 VATSLNNLAQLLNEQAKYDEAKPLQ 74
                79********************995 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.3   2.2e-11   2.2e-08       1      34 []       9      42 ..       9      42 .. 0.96
   2 !   12.4   0.1     8e-05     0.078       2      21 ..      52      71 ..      51      73 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.2e-11
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPnn 34
                akal++l+ +++ +gkyd+A   +e+AL+++ +n
  MMETSP0890-20130614|4000_1  9 AKALNGLAELLFLQGKYDDAKPLFERALRIRQEN 42
                89****************************9876 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 8e-05
                HHHHHHHHHHHHTT-HHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAl 21
                 +l+nl++++ ++ kydeA 
  MMETSP0890-20130614|4000_1 52 TSLNNLAQLLNEQAKYDEAK 71
                689****************5 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.3   2.1e-07   0.00021      27      61 ..       5      39 ..       3      49 .. 0.84
   2 !   26.0   1.8   9.9e-09   9.7e-06       3      50 ..      15      70 ..      13      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.1e-07
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraalala 61
                +P+ a al +lae+l+ +g++d+A  l+++al+++
  MMETSP0890-20130614|4000_1  5 HPKVAKALNGLAELLFLQGKYDDAKPLFERALRIR 39
                58889999999999999999999999999998654 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 9.9e-09
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeA 50
                lA++l+ +G+yd+A +++e+al+           + a  l +la++l ++ ++deA
  MMETSP0890-20130614|4000_1 15 LAELLFLQGKYDDAKPLFERALRIRqenhgldhQDVATSLNNLAQLLNEQAKYDEA 70
                89*********************998888888777********************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   2.0   9.1e-12   8.9e-09       2      57 ..       8      70 ..       7      73 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 9.1e-12
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldpnn.ae.......lyynlAlaylklgkdyeeA 57
                +A+al+ l++ lf +g+yd+A  ++e+Al+++ +n           ++nlA+++ ++  +y+eA
  MMETSP0890-20130614|4000_1  8 VAKALNGLAELLFLQGKYDDAKPLFERALRIRQENhGLdhqdvatSLNNLAQLLNEQA-KYDEA 70
                79*****************************74432223444445************9.6**99 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   7.8e-08   7.6e-05       1      31 [.      11      41 ..      11      46 .. 0.89
   2 !   11.3   0.0   0.00021       0.2       1      18 [.      53      70 ..      53      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.8e-08
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                al+ La+l + +g+y++A  l+eraL+++++
  MMETSP0890-20130614|4000_1 11 ALNGLAELLFLQGKYDDAKPLFERALRIRQE 41
                799*********************8888766 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00021
   PF13176.1  1 allnLarlysrlgdyekA 18
                +l+nLa+l  ++ +y++A
  MMETSP0890-20130614|4000_1 53 SLNNLAQLLNEQAKYDEA 70
                79***************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.4   5.1e-10     5e-07       1      33 [.       9      41 ..       9      42 .. 0.93
   2 ?    5.3   0.0      0.02        19       2      21 ..      52      71 ..      51      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 5.1e-10
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a+al+ l+++++ +g+y++A+ +fe+Al++  +
  MMETSP0890-20130614|4000_1  9 AKALNGLAELLFLQGKYDDAKPLFERALRIRQE 41
                79***************************9765 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHTT-HHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAl 21
                  l+nl++++ ++ +y+eA+
  MMETSP0890-20130614|4000_1 52 TSLNNLAQLLNEQAKYDEAK 71
                5799***************7 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.3e-06    0.0052       9      33 ..       5      29 ..       4      30 .. 0.93
   2 !   13.0   0.5   8.5e-05     0.083       1      33 [.      31      71 ..      31      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.3e-06
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a a+n LAell+ +G++++A+
  MMETSP0890-20130614|4000_1  5 HPKVAKALNGLAELLFLQGKYDDAK 29
                68889******************97 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 8.5e-05
   PF13431.1  1 lyekaleldPnn........adaynnLAelllnnGdleeAe 33
                l+e+al++  +n        a ++nnLA+ll ++ +++eA+
  MMETSP0890-20130614|4000_1 31 LFERALRIRQENhgldhqdvATSLNNLAQLLNEQAKYDEAK 71
                578888887666677888889******************96 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.2e-06    0.0031       1      33 [.       9      42 ..       9      43 .. 0.91
   2 !    7.0   0.0    0.0049       4.8       3      21 ..      53      71 ..      51      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.2e-06
                ---TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
   PF13181.1  1 akayynlGdiYrqlGdydkAkeylekalelkp.r 33
                aka++ l+++++  G+yd Ak  +e+al + + +
  MMETSP0890-20130614|4000_1  9 AKALNGLAELLFLQGKYDDAKPLFERALRIRQeN 42
                589999***********************98855 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0049
                -TTT---HHHHTT-HHHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAk 21
                +++nl++++ +  +yd+Ak
  MMETSP0890-20130614|4000_1 53 SLNNLAQLLNEQAKYDEAK 71
                689***************8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2     8e-07   0.00079       2      35 ..      10      43 ..       9      52 .. 0.89
   2 ?    3.4   0.1      0.14   1.4e+02       5      21 ..      55      71 ..      50      73 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 8e-07
   PF13428.1  2 eallalarallalGdpdeAiallrralalaPdda 35
                +al  la++l+ +G +d+A  l++ral+   ++ 
  MMETSP0890-20130614|4000_1 10 KALNGLAELLFLQGKYDDAKPLFERALRIRQENH 43
                68999**********************9887775 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.14
   PF13428.1  5 lalarallalGdpdeAi 21
                  la++l ++  +deA 
  MMETSP0890-20130614|4000_1 55 NNLAQLLNEQAKYDEAK 71
                579************96 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   7.4e-07   0.00072      31      77 ..      15      70 ..       4      73 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.4e-07
                HHHHHHH---HHHHHHHHHC........TSHCHCBHHHHH.HHHHHHHHTT-HHHH CS
   PF12895.2 31 lAlclylngeykrAyellrk........leldssslgcry.llArcllklgkydeA 77
                lA+ l+l+g+y+ A  l+++        + ld + +++++  lA+ l ++ kydeA
  MMETSP0890-20130614|4000_1 15 LAELLFLQGKYDDAKPLFERalrirqenHGLDHQDVATSLnNLAQLLNEQAKYDEA 70
                7999*******999888888877777565555555666663559999999999999 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-05     0.017       3      26 .]      11      34 ..       9      34 .. 0.91
   2 ?    2.4   0.0      0.26   2.6e+02       4      20 ..      54      70 ..      51      73 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-05
                HH---HHHHHH-------HHHHHT CS
   PF07721.9  3 allaLArallalGdldeAraller 26
                al +LA++l+++G +d+A  l+er
  MMETSP0890-20130614|4000_1 11 ALNGLAELLFLQGKYDDAKPLFER 34
                6779**************999997 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.26
                H---HHHHHH------- CS
   PF07721.9  4 llaLArallalGdldeA 20
                l +LA++l ++  +deA
  MMETSP0890-20130614|4000_1 54 LNNLAQLLNEQAKYDEA 70
                5699***9998777777 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00016      0.16       6      28 ..      15      37 ..      10      39 .. 0.91
   2 ?    2.7   0.0      0.19   1.9e+02       5      20 ..      56      71 ..      53      73 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00016
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                la++++ +g++d+A+ ++er ++
  MMETSP0890-20130614|4000_1 15 LAELLFLQGKYDDAKPLFERALR 37
                899****9************986 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.19
                HHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAl 20
                +la+++ ++ ++deA+
  MMETSP0890-20130614|4000_1 56 NLAQLLNEQAKYDEAK 71
                6899999977****97 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.2e-05     0.021       4      35 ..      12      43 ..       9      46 .. 0.89
   2 ?   -2.1   0.0       2.2   2.2e+03      23      36 ..      49      62 ..      48      64 .. 0.64
   3 ?   -2.5   0.1       2.9   2.9e+03      13      20 ..      63      70 ..      54      70 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-05
   PF10516.4  4 ydlLGEiSlEnEnFpqAveDlrkaLeLreqll 35
                +  L+E+ + ++++++A   +++aL +r++++
  MMETSP0890-20130614|4000_1 12 LNGLAELLFLQGKYDDAKPLFERALRIRQENH 43
                6669*************************987 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.2
   PF10516.4 23 DlrkaLeLreqllp 36
                D  ++L+   qll+
  MMETSP0890-20130614|4000_1 49 DVATSLNNLAQLLN 62
                66677776667766 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.9
   PF10516.4 13 EnEnFpqA 20
                E+ ++++A
  MMETSP0890-20130614|4000_1 63 EQAKYDEA 70
                44456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 246.29
//
Query:       MMETSP0890-20130614|3997_1  [L=969]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-36  124.8   0.6      7e-36  123.2   0.0    2.2  2  PF08644.6  FACT complex subunit (SPT16/CDC68)
    9.8e-23   80.7   0.0    2.2e-22   79.6   0.0    1.5  1  PF00557.19 Metallopeptidase family M24
      2e-18   66.0   0.0    4.2e-18   65.0   0.0    1.6  1  PF08512.7  Histone chaperone Rttp106-like


Domain annotation for each model (and alignments):
>> PF08644.6  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9      0.87     4e+03      91      91 ..     390     390 ..     358     445 .. 0.52
   2 !  123.2   0.0   1.5e-39     7e-36       2     152 .]     469     625 ..     468     625 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.87
   PF08644.6  91 k 91 
                 +
  MMETSP0890-20130614|3997_1 390 R 390
                 1 PP

  == domain 2    score: 123.2 bits;  conditional E-value: 1.5e-39
   PF08644.6   2 yvdkkketvllPiyGrlvpFhistiknvskseegnk.tylrinFnvpgsaagkkeeae.....ked.peaifikeltfrskdskklsevfkeikelkkkvkkreaekkekedlveqekLvllktkrklklkdvyirPtiegkkkvaGtleaHeNGlRy 152
                  vd++ke+++ Pi+G++vp his ik++ + e +   +ylr+n+  pg++ gk+   +     +   +++ f+kel frs+++++l+ ++++i++l+k +++r + k++++dlv+q++L+ ++ +r++++ d+ +rP ++g kk +G+leaH NG+R+
  MMETSP0890-20130614|3997_1 469 CVDTHKEVIFCPINGVPVPIHISWIKTCVQPEADRAaAYLRLNLYAPGQSLGKDVPPStaaviEAFgKQQFFVKELLFRSREQRRLNAAYRAIQTLRKTYRQRLTAKAQQQDLVQQATLIKARDGRAPRIADLSMRPVASG-KKSTGILEAHANGVRF 625
                 79**************************99988888899********9999766443334454344699************************************************************************.***************9 PP

>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   4.7e-26   2.2e-22      23     187 ..     128     304 ..      98     341 .. 0.78

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 4.7e-26
                 ---BHHHHHHHHHHHH......HHTT........TTCGCS-SCCEEEECCCCE--.---S-B-----EEEEEEEEEETTEEEEEEEEEE--GHH-HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E.E--S-------.-SS-S---SSTT---B-----EEEE----- CS
  PF00557.19  23 pgvterelaalieaal......kreg........akgqafppivasgenaallhy.tpndrvlkdgdlvlldvgaeydgyasditrTvvvgftpeqrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlseffphglGHgvglevhdepsvsrkgrgrkleegmvftiePgiy 187
                 + +t+  la+++ea +      +  +          + ++ pi++sg ++++     +n  +lkd d+++l++g++ +gy+++++rT+++++ p+ r++y+a+l+a ea ++a++   +lse  aaaekvl+++ l+ + p+++G g+gl+++d   + + ++++++++   f+++  i 
  MMETSP0890-20130614|3997_1 128 EVITHEALAEKAEALCttdparI--KakdipsdaHLESCYFPIIQSGGEYDVKPSaMSNANRLKD-DVIILSLGVRCEGYCANVSRTLFIDPIPKLRQAYAALLAAREASLKAMRIDQPLSEARAAAEKVLAKHQLDMYLPKNIGFGLGLDFRDASAILNAKNTKTFQADTLFSLSLAIH 304
                 34688889999997764444321..13356666666779999*********75554788889977.************************97789**************************************9898899*************998887677799999999999988776 PP

>> PF08512.7  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   9.2e-22   4.2e-18       1      92 [.     746     834 ..     746     836 .. 0.96

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 9.2e-22
   PF08512.7   1 fpgvkcsrkakeglLyplekgllfglkkpvlviplediesvefeRvsssssrtfdlvvtlkd.egkelefsmIdkeeldvikeflkskgikik 92 
                 f+gv+++   + +lL+p+ ++l+++++ p++v+ l+d+e+v+feR+ +   ++fd  ++ kd   +++ +++I+++eld i+++l++++i+++
  MMETSP0890-20130614|3997_1 746 FHGVPHR---EMVLLQPTVHCLVNLTETPFFVLVLDDVEHVHFERC-TLRAKNFDAIFIKKDhDLPTMAVNAIPMQELDAIQDWLTDMNITYT 834
                 6788888...99*********************************9.**************99889*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1091  (0.0797981); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.99u 0.34s 00:00:02.33 Elapsed: 00:00:01.27
# Mc/sec: 1828.40
//
Query:       MMETSP0890-20130614|3999_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-25   87.6   0.3    7.2e-25   87.6   0.2    2.1  2  PF03839.11 Translocation protein Sec62
  ------ inclusion threshold ------
       0.09   13.4   0.4       0.19   12.3   0.3    1.6  1  PF00639.16 PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.2   1.1e-28   7.2e-25      44     205 ..      61     223 ..      39     230 .. 0.71
   2 ?   -0.4   1.3     0.081   5.6e+02      37      96 ..     283     341 ..     255     344 .. 0.56

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 1.1e-28
  PF03839.11  44 kekkkekakeekkdteaeevdke.......lkkeekkeekkkkkkkkvkLev..neeqafvDgdevyvWiydPvplkkyilgvllvvavialvlfPLWPvllRkGvyYlsvgalgllalilvlailRlilfvivyaivgGklklWilPnLteD.vgfldsFkPlytfeekgd 205
                 k+ ++ek ++++ + ea  vd+        l++     ++ k+ +k + Lev    + +  + + +yvW ++  +  +  l+ ll+v++++++ fP+WP +l+   +Y sv+ l +++++l    lR ilf+  + i     ++Wi+PnL+++  +++dsFkP y+fe+ ++
  MMETSP0890-20130614|3999_1  61 KNTNTEKKRNKRRAYEASSVDEArtvaqslLHG--GFIHRAKRVQKGI-LEVdkSVQHNKWESNGYYVWDFEGSKGLSHFLTGLLIVGMLTVTAFPIWPHFLKVYLWYCSVTLLIFMVVFLS---LRAILFMDFWIIG---YDFWIFPNLFDEsLSVIDSFKPTYSFENGAP 223
                 333333333333333333333321111111333..2233444434544.5553133445567789*******99988888888999***************************999999998...69*****999887...67********6538*************9877 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.081
  PF03839.11  37 kskkeeskekkkekakeekkdteaeevdkelkkeekkeekkkkkkkkvkLevneeqafvD 96 
                 k k++  +e ++e a+ e+ ++ +e+ +  l+ +  + e kk  + +  L+ + +q++ D
  MMETSP0890-20130614|3999_1 283 KIKRPSFEELAQEEARAEEEAKVKENIQD-LHRQALDPEYKKMLEEDPDLDDQAAQDMID 341
                 33333444444455555555555544444.666666666666666666677666666666 PP

>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.8e-05      0.19      16      71 ..     273     326 ..     261     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
  PF00639.16  16 akakaeelleqlksgedtFaelakeySddkssakngGdLgwfergqlppefekavf 71 
                 + ++a + ++++k+   +F+ela+e    +++ak +  ++++ r+ l+pe++k+++
  MMETSP0890-20130614|3999_1 273 TSQQARDDIDKIKRP--SFEELAQEEARAEEEAKVKENIQDLHRQALDPEYKKMLE 326
                 445555555555554..5*********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       882  (0.0645114); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:01.15
# Mc/sec: 725.10
//
Query:       MMETSP0890-20130614|4004_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-10   39.4   0.0    8.8e-10   38.3   0.0    1.4  1  PF12813.2 XPG domain containing


Domain annotation for each model (and alignments):
>> PF12813.2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   6.4e-14   8.8e-10       9     171 ..     173     335 ..     165     351 .. 0.75

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 6.4e-14
   PF12813.2   9 vveaLkerwkfavitevvpgEADkycAilArklgcaVLtsDSDllvhdl.gpegsviflqslelksneqesklslratqytpaniakrlglp..sLpllAf.........el.krdphssfaelikrakksekvneksasykeflkeylsleeeeaaeatqlqlldsrvselvlqy 171
                 + e L e+++  v ++  ++E D  +A+ A k +c++Lt+D D+l + + gp  ++if++ ++ +      + +++    +p+++ak lg+   sLp++ +          l ++ +++++++l + a  +++ + +  ++ +++ +         +e+ ++  +d +v +l++++
  MMETSP0890-20130614|4004_1 173 ILETLLEEESKTVELIFSNEEDDPGVAYEAMKRNCFILTNDTDMLCYKYdGPIQGIIFFNGIDKTF-----SQGIKFEFTSPEKVAKCLGIGewSLPAFGTllgndyssnHLsNIVYERAIEKLSQEACGKSNSERRRIKIRALTDWI--------KECDKFDNVDKKVDALLQKV 335
                 6677777767778888899*********************************************99.....6788888899***********999**999999994444433334444444444444444444444444444444444........35666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:01.05
# Mc/sec: 1666.04
//
Query:       MMETSP0890-20130614|4003_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-10   40.3   0.1    2.8e-10   39.9   0.1    1.3  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    0.00016   21.4   0.0    0.00035   20.2   0.0    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
        0.1   11.8   0.2       0.25   10.5   0.1    1.6  1  PF12664.2  Protein of unknown function (DUF3789)


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   6.1e-14   2.8e-10      19      95 .]     121     196 ..      83     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 6.1e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
  PF00043.20  19 aekdeaeveeakrkvlevlealeeelsgkkylvGdkltlADialfpalewlqrldgnfleeefPklkawlkriaarp 95 
                 +e  ++  e +k++  + ++ le +l ++k+lv d++t AD++ + a+ew+       + ++fPkl+ w++ i+  p
  MMETSP0890-20130614|4003_1 121 SEVIQKKWEGKKERADKWFALLESKLTKSKFLVCDEPTVADFHGVFAFEWVLVKYEGDF-KAFPKLTQWWTAINDYP 196
                 55566677889999***********************************8876555555.8***********99866 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.6e-08   0.00035       8      66 ..     132     188 ..     117     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.6e-08
                 GGGTT-THGGG------SS.-------HHHHHHHHHHHHHHHHH------TT----HHH CS
   PF13410.1   8 raqlraaLdaleahLadgpfllGdrpslaDialapflvrldaagpgldireayPnlraw 66 
                 ++++++ +++le+ L+++ fl  d+p+ aD+     + ++ + + g    +a+P+l +w
  MMETSP0890-20130614|4003_1 132 KERADKWFALLESKLTKSKFLVCDEPTVADFHGVFAFEWVLVKYEG--DFKAFPKLTQW 188
                 688999************************9988888888777753..56899999888 PP

>> PF12664.2  Protein of unknown function (DUF3789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   5.4e-05      0.25       6      19 ..      28      41 ..      25      42 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.4e-05
   PF12664.2  6 fLlvslGmgiGVvl 19
                fLl++lG +iGVvl
  MMETSP0890-20130614|4003_1 28 FLLFALGRAIGVVL 41
                9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 743.58
//
Query:       MMETSP0890-20130614|4008_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-10   38.9  62.0     0.0028   17.1   9.0    4.7  4  PF13488.1  Glycine zipper
    6.1e-09   35.1  60.2       0.46    9.9  14.2    5.3  3  PF13441.1  YMGG-like Gly-zipper
    1.4e-05   24.6  51.4      0.092   12.2   9.0    4.1  3  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
    0.00066   19.1  60.8        8.9    5.9   5.6    5.3  4  PF05433.10 Glycine zipper 2TM domain
     0.0016   17.8   7.2         16    4.9   0.1    5.7  3  PF09811.4  Essential protein Yae1, N terminal
  ------ inclusion threshold ------
      0.011   15.6  54.0         19    5.3   4.1    5.9  3  PF10439.4  Bacteriocin class II with double-glycine leader peptide
        6.8    6.8  45.5    1.4e+04  -33.0  31.5    7.5  1  PF10247.4  Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0  11.3   0.00023      0.45       9      43 ..      11      48 ..       1      58 [. 0.49
   2 !   17.1   9.0   1.4e-06    0.0028       1      41 [.      39      78 ..      39      82 .. 0.85
   3 !   11.0  11.8   0.00011      0.22       1      39 [.      83     120 ..      79     142 .. 0.62
   4 !    8.6   8.9   0.00062       1.2       5      39 ..     119     156 ..     115     162 .] 0.56

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00023
   PF13488.1  9 aGAaiGaaag...gagkGAliGAavGaaaGaliGaymd 43
                +G a+G  +g   g ++G+ +GAavG  +Gal+G++ +
  MMETSP0890-20130614|4008_1 11 VGTALGNDVGtpvGKAVGTDVGAAVGQNVGALVGRAVG 48
                44444444443332244444555544444444444433 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.4e-06
   PF13488.1  1 iGaaiGAaaGAaiGaaaggagkGAliGAavGaaaGaliGay 41
                +Ga++G a+G  +G a+g+ ++GAl+G+avG+ +Ga +G+ 
  MMETSP0890-20130614|4008_1 39 VGALVGRAVGTELGVAVGQ-NVGALVGTAVGTDVGAPVGQD 78
                6888888888888889987.8**************999985 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00011
   PF13488.1   1 iGaaiGAaaGAaiGaaaggagkGAliGAavGaaaGaliG 39 
                 +Ga++GA +GA +G  +g + +G+++G  vG+ +G ++G
  MMETSP0890-20130614|4008_1  83 VGATVGADVGASVGHDVGSP-VGTAVGSDVGTPVGHAVG 120
                 46666666666666666643.555555555555555554 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00062
   PF13488.1   5 iGAaaGAaiGaaag...gagkGAliGAavGaaaGaliG 39 
                 +G  +G ++G+ +g   g ++G+ +G avG+++G ++G
  MMETSP0890-20130614|4008_1 119 VGSPVGNVVGTDVGasvGNAEGSPVGLAVGTLVGLIVG 156
                 55555555554444333235777777777777776666 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   9.7   0.00037      0.73      13      44 ..      11      45 ..       1      48 [. 0.56
   2 !    9.9  14.2   0.00023      0.46       6      43 ..      32      76 ..      24      78 .. 0.79
   3 ?   -1.3  24.1      0.71   1.4e+03       6      43 ..      60      96 ..      58     160 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00037
                XXXXXXXXXX...XXX---------------TTHH CS
   PF13441.1 13 aGAaiGaaaG...gggkGAaiGAaaGalaGgaaga 44
                +G a+G+ +G   g   G+ +GAa+G  +G+++g+
  MMETSP0890-20130614|4008_1 11 VGTALGNDVGtpvGKAVGTDVGAAVGQNVGALVGR 45
                34444444444333666777777777666666665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00023
                XXXXXXXXXXXXXXXXX.......XXX---------------TTH CS
   PF13441.1  6 GAaiGAaaGAaiGaaaG.......gggkGAaiGAaaGalaGgaag 43
                GAa+G  +GA++G a+G       g   GA++G+a+G+ +G+ +g
  MMETSP0890-20130614|4008_1 32 GAAVGQNVGALVGRAVGtelgvavGQNVGALVGTAVGTDVGAPVG 76
                888888888888888888887776677789999999999998666 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.71
                XXXXXXXXXXXXXXXXXXXX---------------TTH CS
   PF13441.1  6 GAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                GA++G+a+G  +Ga +G    GA +GA++Ga +G+ +g
  MMETSP0890-20130614|4008_1 60 GALVGTAVGTDVGAPVG-QDVGAPVGATVGADVGASVG 96
                89999999999999999.88899999999999999988 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4  15.6    0.0015       2.9      50      96 ..      27      72 ..       1      80 [. 0.88
   2 !   12.2   9.0   4.7e-05     0.092      54      94 ..      59      98 ..      52     102 .. 0.78
   3 ?   -1.1  15.6      0.63   1.2e+03      54      63 ..     123     132 ..      76     162 .] 0.48

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0015
   PF13436.1 50 esaaegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagag 96
                  + +gaavG  vGA++g a+g  + g+a+G  +G+lvG+a+G+  g
  MMETSP0890-20130614|4008_1 27 VGTDVGAAVGQNVGALVGRAVGT-ELGVAVGQNVGALVGTAVGTDVG 72
                567789*****************.99*****************9766 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.7e-05
   PF13436.1 54 egaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGag 94
                +ga+vG+avG  +ga +g+ + ga +GA +G+ vGa++G  
  MMETSP0890-20130614|4008_1 59 VGALVGTAVGTDVGAPVGQ-DVGAPVGATVGADVGASVGHD 98
                6888888888888888888.888888888888888888865 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.63
   PF13436.1  54 egaavGaavG 63 
                 +g +vG+ vG
  MMETSP0890-20130614|4008_1 123 VGNVVGTDVG 132
                 2333333344 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.2     0.014        27       9      41 ..      11      43 ..       1      44 [. 0.69
   2 ?   -3.1  23.5         3   5.9e+03       2      42 .]      56      96 ..      23     100 .. 0.95
   3 !    5.7  13.1    0.0053        10       2      42 .]      80     120 ..      79     138 .. 0.91
   4 !    5.9   5.6    0.0045       8.9       8      38 ..     126     156 ..     123     160 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.014
  PF05433.10  9 aGavaGaaigggggrllgavvGAaaGalaGnai 41
                +G ++G+ +g + g+++g+ vGAa+G  +G+ +
  MMETSP0890-20130614|4008_1 11 VGTALGNDVGTPVGKAVGTDVGAAVGQNVGALV 43
                567777777777777777777777776666655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3
  PF05433.10  2 GaliGAaaGavaGaaigggggrllgavvGAaaGalaGnaig 42
                G  +GA++G ++G  +g++ g+ +ga vGA +Ga +G+ +g
  MMETSP0890-20130614|4008_1 56 GQNVGALVGTAVGTDVGAPVGQDVGAPVGATVGADVGASVG 96
                6679******************************9999886 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0053
  PF05433.10   2 GaliGAaaGavaGaaigggggrllgavvGAaaGalaGnaig 42 
                 Ga +GA +Ga +Ga +g+  g+ +g++vG  +G+ +G+a+g
  MMETSP0890-20130614|4008_1  80 GAPVGATVGADVGASVGHDVGSPVGTAVGSDVGTPVGHAVG 120
                 78899999999999998889999999999999999999987 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0045
  PF05433.10   8 aaGavaGaaigggggrllgavvGAaaGalaG 38 
                 ++G  +Ga +g+ +g+ +g +vG ++G ++G
  MMETSP0890-20130614|4008_1 126 VVGTDVGASVGNAEGSPVGLAVGTLVGLIVG 156
                 6777799999999**************9999 PP

>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   1.4    0.0092        18      13      35 ..      40      62 ..       4      69 .. 0.70
   2 !    4.9   0.1    0.0084        16      19      33 ..      78      92 ..      64     134 .. 0.87
   3 ?    3.9   0.0     0.018        34      23      38 ..     138     153 ..     128     162 .] 0.69

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0092
   PF09811.4 13 glqeGfdeGfqeGaqlGlelGel 35
                g   G+  G + G+ +G+ +G l
  MMETSP0890-20130614|4008_1 40 GALVGRAVGTELGVAVGQNVGAL 62
                33345555555555555555555 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0084
   PF09811.4 19 deGfqeGaqlGlelG 33
                d G + Ga++G+++G
  MMETSP0890-20130614|4008_1 78 DVGAPVGATVGADVG 92
                567777777777777 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.018
   PF09811.4  23 qeGaqlGlelGeleGi 38 
                 +eG+ +Gl++G l G+
  MMETSP0890-20130614|4008_1 138 AEGSPVGLAVGTLVGL 153
                 4566666666666554 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.5  21.9         7   1.4e+04      25      64 ..      58      96 ..       1     101 [. 0.68
   2 ?    3.4   7.1     0.038        74      34      60 ..     110     136 ..      91     141 .. 0.53
   3 ?    5.3   4.1    0.0096        19      36      60 ..     132     156 ..     128     162 .] 0.55

  Alignments for each domain:
  == domain 1    score: -9.5 bits;  conditional E-value: 7
   PF10439.4 25 cvagigggaaaGalaGaatgga....vGglaGAlvGavvGaigg 64
                +v++++ g+a G+ +Ga    +    vG+++GA vGa vGa  g
  MMETSP0890-20130614|4008_1 58 NVGALV-GTAVGTDVGA----PvgqdVGAPVGATVGADVGASVG 96
                222222.2222333333....24555888888888888887665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.038
   PF10439.4  34 aaGalaGaatggavGglaGAlvGavvG 60 
                   G+ +G a+g++vG+++G+ vGa+vG
  MMETSP0890-20130614|4008_1 110 DVGTPVGHAVGSPVGNVVGTDVGASVG 136
                 224444555555566666666666655 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0096
   PF10439.4  36 GalaGaatggavGglaGAlvGavvG 60 
                 Ga +G a g++vG ++G+lvG +vG
  MMETSP0890-20130614|4008_1 132 GASVGNAEGSPVGLAVGTLVGLIVG 156
                 5555555555555555555555555 PP

>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -33.0  31.5         7   1.4e+04      25      25 ..     127     127 ..       1     162 [] 0.65

  Alignments for each domain:
  == domain 1    score: -33.0 bits;  conditional E-value: 7
   PF10247.4  25 f 25 
                 +
  MMETSP0890-20130614|4008_1 127 V 127
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:01.55
# Mc/sec: 250.46
//
Query:       MMETSP0890-20130614|4006_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.091   11.9   0.0       0.15   11.2   0.0    1.3  1  PF04769.7 Mating-type protein MAT alpha 1
       0.28   11.1   5.6       0.19   11.7   2.1    2.2  2  PF12390.3 Selenocysteine synthase N terminal


Domain annotation for each model (and alignments):
>> PF04769.7  Mating-type protein MAT alpha 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.2e-05      0.15     120     163 ..      60     105 ..      57     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.2e-05
   PF04769.7 120 liepeaYlellGwsltqne..egtltlerttapklqsllqelnqla 163
                 + e + Y++ lGw +t+n+  ++t++++r+ta+ +++     n+l+
  MMETSP0890-20130614|4006_1  60 VFEIDMYSRYLGWFVTHNHlaDSTILASRSTASLMRAGVLRTNELY 105
                 567789***********9733689999********99988877766 PP

>> PF12390.3  Selenocysteine synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.1   2.8e-05      0.19       9      37 ..     180     226 ..     180     227 .. 0.96
   2 ?   -4.1   0.0         2   1.4e+04      17      27 ..     348     356 ..     344     356 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
   PF12390.3   9 alLtalaaael..................laalpRalvrdavrafLd 37 
                 +lL+a+a+++l                  +++ p alvr a+r +L+
  MMETSP0890-20130614|4006_1 180 RLLKAAAHQTLklihgvrhdprrarvtalVEQNPAALVRSACRRALA 226
                 69******************************************997 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2
   PF12390.3  17 aellaalpRal 27 
                 ++l  ++pR+l
  MMETSP0890-20130614|4006_1 348 PAL--DYPRHL 356
                 555..899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1383.90
//
Query:       MMETSP0890-20130614|4026_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-12   44.2   0.0    1.6e-11   43.3   0.0    1.4  2  PF13475.1  Domain of unknown function (DUF4116)
     0.0045   16.5   0.0     0.0051   16.4   0.0    1.0  1  PF12385.3  Papain-like cysteine protease AvrRpt2
  ------ inclusion threshold ------
      0.091   12.0   0.1      0.095   11.9   0.1    1.0  1  PF00215.19 Orotidine 5'-phosphate decarboxylase / HUMPS family


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.62   2.8e+03      16      23 ..       2       9 ..       1      10 [. 0.68
   2 !   43.3   0.0   3.6e-15   1.6e-11       3      42 ..      14      53 ..      13      54 .] 0.98

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.62
   PF13475.1 16 lkylseeL 23
                l+y+++++
  MMETSP0890-20130614|4026_1  2 LEYADPKH 9 
                67887776 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 3.6e-15
   PF13475.1  3 EivleavkkngsalkylseeLknDkeivlkAvkqngsals 42
                Eivl+avkk+g alk+++++L+ D  +vl+Av+q+gsal+
  MMETSP0890-20130614|4026_1 14 EIVLAAVKKHGRALKFADPKLQDDPKVVLAAVQQDGSALK 53
                9*************************************97 PP

>> PF12385.3  Papain-like cysteine protease AvrRpt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-06    0.0051     118     159 ..       7      47 ..       2      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-06
   PF12385.3 118 PndelvahvivltGidketdviifhDPergPdltmsldtlnq 159
                 P+ +   h ivl+ ++k++ ++ f DP+   d ++ l+ ++q
  MMETSP0890-20130614|4026_1   7 PKHKA-VHEIVLAAVKKHGRALKFADPKLQDDPKVVLAAVQQ 47 
                 55555.7*****************************999877 PP

>> PF00215.19  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.1e-05     0.095      43      79 ..      12      50 ..       2      53 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
                HHHHHHHHHHHHT.SEEEEEEEE-S-HHHHHHHHH-.-H CS
  PF00215.19 43 tlaklvallrkhg.flifeDrKfaDIGntvekqaka.gs 79
                + + ++a+++khg +l f+D K+ D +++v +++++ gs
  MMETSP0890-20130614|4026_1 12 VHEIVLAAVKKHGrALKFADPKLQDDPKVVLAAVQQdGS 50
                445578999***9*****************999987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 196.07
//
Query:       MMETSP0890-20130614|4024_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   80.1   0.3    4.3e-22   78.3   0.0    1.9  2  PF13426.1  PAS domain
    3.2e-07   30.0   9.2    8.9e-07   28.6   6.3    1.7  1  PF00170.16 bZIP transcription factor
    3.6e-07   29.7  11.2    3.6e-07   29.7   7.8    2.5  2  PF07716.10 Basic region leucine zipper
     0.0038   17.1   0.2     0.0082   16.0   0.0    1.7  2  PF08448.5  PAS fold
     0.0041   16.7   0.2      0.016   14.8   0.0    2.0  2  PF00989.19 PAS fold
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.039   13.9   0.0    1.5  1  PF08447.6  PAS fold
       0.11   12.5   3.6       0.17   11.8   2.5    1.4  1  PF12316.3  Segment polarity protein dishevelled (Dsh) C terminal
        1.8    6.3   9.1        3.3    5.4   6.3    1.3  1  PF09798.4  DNA damage checkpoint protein


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       1.7   2.9e+03      37      61 ..     124     150 ..     102     175 .. 0.51
   2 !   78.3   0.0   2.5e-25   4.3e-22       4      99 ..     263     361 ..     261     366 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.7
   PF13426.1  37 rdlfpededeeav..alleraleagge 61 
                 ++l++++e+++++  ++ +r++++ +e
  MMETSP0890-20130614|4024_1 124 TNLIGQQEQQQQQqnKSTKRSRTSARE 150
                 455554444333311223333332222 PP

  == domain 2    score: 78.3 bits;  conditional E-value: 2.5e-25
   PF13426.1   4 ilildpd...gtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleaggevevelelrrkdgeefpvevtvtpvrdedgevvgiivil 99 
                 ++i+dp+   ++i+fa++ +l l+Gy+ + vlg+++r+l+++++d++ava++++a+e+g++ +v l ++r dg++f++++ v+p+rd dg+vv++++++
  MMETSP0890-20130614|4024_1 263 FVITDPSlpdNPIVFASQGFLSLTGYSLDNVLGRNCRFLQGPRTDPRAVAKIRKAVEEGYDTSVCLLNYRIDGSTFYNQFFVAPLRDGDGNVVNYVGVQ 361
                 5788888888**************************************************************************************986 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   6.3   5.2e-10   8.9e-07       5      48 ..     155     198 ..     152     202 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 5.2e-10
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
  PF00170.16   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                 ++  r+++NRe A+rsR RKk  +e L++ v +L+ eN++L+  
  MMETSP0890-20130614|4024_1 155 QKDERRERNREHAKRSRVRKKFLLESLQQSVNALQYENDKLRIA 198
                 67789************************************965 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.1      0.17   2.8e+02      13      32 ..     138     157 ..     131     158 .. 0.86
   2 !   29.7   7.8   2.1e-10   3.6e-07       3      45 ..     153     196 ..     151     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.17
  PF07716.10  13 reAArrsRekkkakeeelee 32 
                 + + +rsR  +++++e+ ++
  MMETSP0890-20130614|4024_1 138 NKSTKRSRTSAREMTEQQKD 157
                 56779**********99876 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 2.1e-10
  PF07716.10   3 deyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLr 45 
                 ++++++Rr rNre A+rsR +kk   e+l++ v++L+ eN++Lr
  MMETSP0890-20130614|4024_1 153 EQQKDERReRNREHAKRSRVRKKFLLESLQQSVNALQYENDKLR 196
                 667777777**********************************7 PP

>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       5.6   9.5e+03      49      75 ..     128     155 ..     122     165 .. 0.66
   2 !   16.0   0.0   4.8e-06    0.0082      15     101 ..     273     360 ..     258     367 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 5.6
   PF08448.5  49 aarleralrrvlegeepiefleelll.p 75 
                 +++ +++ ++  +++++ +++ e++   
  MMETSP0890-20130614|4024_1 128 GQQEQQQQQQNKSTKRSRTSAREMTEqQ 155
                 5666777777777777777777777652 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.8e-06
   PF08448.5  15 grvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.pgeerhyelrllPlrdesGevigvlvi 101
                   +++a++ + +l g++ + +lG+ ++ l  ++  +r  + +r+++e++   + +    + +g++ + ++++ Plrd +G v+ ++++
  MMETSP0890-20130614|4024_1 273 NPIVFASQGFLSLTGYSLDNVLGRNCRFLQGPRTDPRAVAKIRKAVEEGYDTSVCLLNYRiDGSTFYNQFFVAPLRDGDGNVVNYVGV 360
                 55899**********************6666669999999999999999888887754449********************9998875 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.3   2.3e+03      81      81 ..     141     141 ..     111     176 .. 0.53
   2 !   14.8   0.0   9.3e-06     0.016      14     109 ..     263     360 ..     251     364 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.3
                 S CS
  PF00989.19  81 l 81 
                 +
  MMETSP0890-20130614|4024_1 141 T 141
                 2 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 9.3e-06
                 EEEES...----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS...SSSSEEEEEEEEEECS-S-E-.CEEEE CS
  PF00989.19  14 ifvvD...edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl..rdgrpihlevraspvrdaggeilgflgv 109
                  +++D    d  i+++++ + +l+G+s + vlg++   ++  +  +++++++ + +++ ee+ +  +++     dg++++ +  ++p+rd++g++  ++gv
  MMETSP0890-20130614|4024_1 263 FVITDpslPDNPIVFASQGFLSLTGYSLDNVLGRNCR-FLQGP--RTDPRAVAKIRKAVEEGYDTSVCLLNyrIDGSTFYNQFFVAPLRDGDGNVVNYVGV 360
                 5555555567789***********************9.66666..34777777777777777666666666888********************9966665 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-05     0.039       1      90 [.     275     360 ..     275     361 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.3e-05
   PF08447.6   1 iiyvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeelllkkgevysfeyRirrkdGeyrWveargrvirdengkpvrvigv 90 
                 i+++s+ +  ++Gys + + g++    ++ l  p   +r+ +++++ +  +g   s+   + r dG++ + +    ++rd +g++v ++gv
  MMETSP0890-20130614|4024_1 275 IVFASQGFLSLTGYSLDNVlGRN----CRFLQGPRTDPRAVAKIRK-AVEEGYDTSVCLLNYRIDGSTFYNQFFVAPLRDGDGNVVNYVGV 360
                 589****************8888....7777788888888888887.55556333444444457*************************98 PP

>> PF12316.3  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.5   9.9e-05      0.17      42     129 ..      82     173 ..      49     201 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.9e-05
   PF12316.3  42 qypaphpysp.PaysdlsysygsG...sagsqhseGsrssgsnrsdgeakrakqereeagekkegsgsesehssrsslsrsateeapserss 129
                  yp  +p  p  ++++  y +g+    sa s +  G +  ++++ +g++++++q++++  +++  s+ e+ ++++ + + +++e+a  +r +
  MMETSP0890-20130614|4024_1  82 HYPHGPPGLPlASMEEDDYGMGMSgddSAYSDQIRGGNKRETTNLIGQQEQQQQQQNKSTKRSRTSAREMTEQQKDERRERNREHAKRSRVR 173
                 57777777775555565555554322255566666666666666667777776666666666666777766666644444444433333333 PP

>> PF09798.4  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.3    0.0019       3.3       8     122 ..     151     267 ..     129     272 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0019
   PF09798.4   8 eLqqqkqeernkqkervnelkekhdqelkklkqelqklederkflvleqrglsanklrtelsrksaensradslktsdasniadesqensikkkkeeie.....lekelveLnpnriikd 122
                 + +qqk+e r++  e+ + ++++++  l+ l+q ++ l+ e   l +  r ++  +++ +l+ k    s+  s++++d ++ ++   ++s+    +  +     l+k l++ ++n++i+d
  MMETSP0890-20130614|4024_1 151 MTEQQKDERRERNREHAKRSRVRKKFLLESLQQSVNALQYENDKLRIAIRDKVGDDVANDLLAKV---STCSSVTQIDMNEQNKSLIAKSPSDATRILDdpdysLVKALQTAQQNFVITD 267
                 6799*******************************************************999887...4445555555554444444444443333222333449999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1817  (0.132899); expected 273.4 (0.02)
Passed bias filter:                      679  (0.0496635); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.91u 0.47s 00:00:01.38 Elapsed: 00:00:01.13
# Mc/sec: 796.68
//
Query:       MMETSP0890-20130614|4037_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.87
# Mc/sec: 592.20
//
Query:       MMETSP0890-20130614|4041_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-46  155.5   0.0    8.4e-46  155.0   0.0    1.1  1  PF00572.13 Ribosomal protein L13
  ------ inclusion threshold ------
       0.12   10.4   0.0       0.15   10.0   0.0    1.1  1  PF08017.6  Fibrinogen binding protein


Domain annotation for each model (and alignments):
>> PF00572.13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   1.2e-49   8.4e-46       1     121 [.      21     142 ..      21     148 .. 0.97

  Alignments for each domain:
  == domain 1    score: 155.0 bits;  conditional E-value: 1.2e-49
                 EEEEE----B---HHHHHHHHH-----SS--SS.S----EEEEE--TT-B----TSSS-EEEE---------EEEESTTTTS-HHHHHHHHH-----------TTGGGEEE----TCGGGG- CS
  PF00572.13   1 wiviDakgqilGrlAskiAklLlGkhkptytph.vdtGdyVvvvnaekvvltGkkaeqkkykrhtgypgglkektakkllerkperilkkaVkgmLpknklgrealkklkvyagsehphkaq 121
                 w+++Dakg ++GrlAs iA +L+Gkhkp+++++ +d Gd Vvv+na+++++tGkk++qk+y++h+gypggl+e++a++  +rkp ++l +aVkgmLpk+k+++  +++l++y+gs+hp++++
  MMETSP0890-20130614|4041_1  21 WHLVDAKGYPVGRLASAIAPILRGKHKPNFERNvLDVGDVVVVINAKQIHFTGKKWDQKMYRWHSGYPGGLTERRARDQQRRKPGNVLLRAVKGMLPKSKSRMIYMQNLRIYSGSTHPYEEN 142
                 9******************************9988***********************************************************************************8773 PP

>> PF08017.6  Fibrinogen binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.3e-05      0.15     223     244 ..      92     113 ..      76     135 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.3e-05
   PF08017.6 223 lerrqrdvenksqgnvlerrqr 244
                  err rd + +  gnvl r  +
  MMETSP0890-20130614|4041_1  92 TERRARDQQRRKPGNVLLRAVK 113
                 1222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 681.25
//
Query:       MMETSP0890-20130614|4036_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-07   29.5   1.0    1.9e-06   27.7   0.7    2.1  1  PF13921.1  Myb-like DNA-binding domain
    4.7e-06   26.4   0.1    9.9e-06   25.4   0.1    1.6  1  PF00249.26 Myb-like DNA-binding domain
     0.0052   16.4   0.1      0.033   13.9   0.1    2.4  2  PF13873.1  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.7   4.2e-10   1.9e-06       1      54 [.     208     261 ..     208     277 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 4.2e-10
   PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelg.....rRtplacqdrwknkLrpkisrapwtk 54 
                 Wt++E ++L+  ++++g +W++I   +       R+ ++++d+w+n     ++r+ wt 
  MMETSP0890-20130614|4036_1 208 WTQDEIDALIAGMRTHGLQWATIRDSFSifktnDRSGTDLRDKWRN-----MERKGWTL 261
                 ***********************99998889***************.....56666664 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   2.2e-09   9.9e-06       3      47 ..     207     254 ..     205     255 .. 0.96

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.2e-09
                 SS-HHHHHHHHHHHHHTTS-.HHHHHHHCT....TTS-HHHHHHHHHHH CS
  PF00249.26   3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 
                 +WT++E + l+ + + +G   W+tI   +     + R++ +++++w++ 
  MMETSP0890-20130614|4036_1 207 KWTQDEIDALIAGMRTHGLQ-WATIRDSFSifktNDRSGTDLRDKWRNM 254
                 8*****************99.**************************95 PP

>> PF13873.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.81   3.7e+03       4      20 ..     207     223 ..     206     226 .. 0.88
   2 !   13.9   0.1   7.2e-06     0.033      41      70 ..     227     256 ..     223     258 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.81
   PF13873.1   4 nfteeEkevLvelvekr 20 
                 ++t++E + L++ ++ +
  MMETSP0890-20130614|4036_1 207 KWTQDEIDALIAGMRTH 223
                 79********9988876 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 7.2e-06
   PF13873.1  41 WeeiaeevnalgptqRtadelkkkWedlkk 70 
                 W++i +++  + + +R+  +l++kW+++ +
  MMETSP0890-20130614|4036_1 227 WATIRDSFSIFKTNDRSGTDLRDKWRNMER 256
                 ********888888**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1339  (0.0979374); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.91
# Mc/sec: 1379.88
//
Query:       MMETSP0890-20130614|4045_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.66    9.0   3.1       0.75    8.9   2.2    1.1  1  PF07271.6 Cytadhesin P30/P32
        3.6    6.3  10.4        4.6    5.9   7.2    1.3  1  PF10186.4 UV radiation resistance protein and autophagy-related subunit 14
          9    4.3  16.0         10    4.1  11.1    1.1  1  PF09726.4 Transmembrane protein


Domain annotation for each model (and alignments):
>> PF07271.6  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.2   0.00016      0.75      99     146 ..      11      60 ..       6      92 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00016
   PF07271.6  99 ekrlleekerqeklaeqlqris..eqeeqqaveidpaeevnaqeeaqPag 146
                  +r+  e+er e++a  l   +  + +++qa+e +  e  ++++ a+ a+
  MMETSP0890-20130614|4045_1  11 TRRIESERERAEQMATTLREREerHAQDRQALEAKHYEILEEHKSAHAAA 60 
                 588889************9988344577899**88765555555555554 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.2     0.001       4.6      77     144 ..      12      81 ..       2     110 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.001
   PF10186.4  77 krieqlkeeieqkrerieelkealaqrrsdle.asaqlekrraeqlaklqeeikrtksklns.lesltae 144
                  rie  +e+ eq    ++e++e  aq r+ le +++++ +++++  a  ++e k+++++ ++ l s+ a+
  MMETSP0890-20130614|4045_1  12 RRIESERERAEQMATTLREREERHAQDRQALEaKHYEILEEHKSAHAAALAEAKHLHENAQAaLVSKHAA 81 
                 4566666666666666666666666666666666666666666666666666666666655555555444 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  11.1    0.0022        10     484     556 ..      15      87 ..       4     112 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0022
   PF09726.4 484 qkekqslqslekrLkeerearvsvekqLaeekkrkkeeeetaaravalaaasre.ekaeslkskkqdleleikk 556
                   e+   +++   L+ ere+r + ++q  e k++   ee+++a+a+ala a+   e+a++    k+  ele k 
  MMETSP0890-20130614|4045_1  15 ESERERAEQMATTLR-EREERHAQDRQALEAKHYEILEEHKSAHAAALAEAKHLhENAQAALVSKHAAELEAKT 87 
                 556777777877775.78999999*************************9998779999988888877766542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1496  (0.109421); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.45s 00:00:00.91 Elapsed: 00:00:00.80
# Mc/sec: 338.49
//
Query:       MMETSP0890-20130614|4051_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.73
# Mc/sec: 226.50
//
Query:       MMETSP0890-20130614|4050_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-25   87.8   0.0    3.2e-24   85.3   0.0    1.9  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   2.4e-28   3.2e-24       5     154 ..     160     331 ..     156     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 2.4e-28
   PF14240.1   5 tiplsptlastptslslgavGvalnGvpidpaaaeaanegedaatleglDecggHvqptgaYHYHgapeclleeaeedse................................saliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvtgtYhYhvtd 154
                  +  +p ++s+p +++lg++G+alnG+p+++  +   + ++da ++e++D c gH++ +g+YHYH++p c+ ++ + +++                                sa++G ++D   +Yg+++             ++   + + +  y++++gdLDecnG++g +g+Y+Y+ t 
  MMETSP0890-20130614|4050_1 160 NLRPNPITSSSPIETPLGPIGIALNGIPLYNWKT---SGERDAIQIESFDLCAGHPDSKGRYHYHQFPRCVKSASSLGRQasqvlaanygqnpwsakpladalrqqiqsaqpSAPVGILFDSCLLYGPVGVGAGG-------PVRLLRSSYVNGRYQQNAGDLDECNGAIGPDGIYRYYCTV 331
                 55667899999999999***************99...578999******************************97766556789999999999999999999999999999999999999999999999987665.......22223455667789999********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:01.12
# Mc/sec: 849.42
//
Query:       MMETSP0890-20130614|4067_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 200.87
//
Query:       MMETSP0890-20130614|4074_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   12.0   0.3       0.15   12.0   0.2    1.9  2  PF03939.8 Ribosomal protein L23, N-terminal domain


Domain annotation for each model (and alignments):
>> PF03939.8  Ribosomal protein L23, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.19   2.6e+03      15      21 ..      16      31 ..      12      40 .. 0.51
   2 ?   12.0   0.2   1.1e-05      0.15      27      40 ..     117     130 ..     115     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.19
   PF03939.8 15 kkGaka.........k 21
                kkG+++         +
  MMETSP0890-20130614|4074_1 16 KKGKRKitlvtqsslS 31
                6665555444444442 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.1e-05
   PF03939.8  27 rtsvtFrRPkTlkl 40 
                 + + +F+RP+Tl +
  MMETSP0890-20130614|4074_1 117 YANKQFHRPHTLLR 130
                 6778*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 464.48
//
Query:       MMETSP0890-20130614|4073_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-05   22.5   0.1    5.5e-05   21.9   0.1    1.2  1  PF03092.11 BT1 family


Domain annotation for each model (and alignments):
>> PF03092.11  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     4e-09   5.5e-05     356     421 ..     107     173 ..      95     183 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4e-09
  PF03092.11 356 fAllasianlgqivSsslGalLmeylgvtedqfsnlsllllveslaa.llplpLlflllpsariidd 421
                 +  l  ++  g ++S++++a L+    +  d++s+l++ll +++l++ l ++pL  l  ps +i  +
  MMETSP0890-20130614|4073_1 107 YGALLALVDSGASISGWMAAPLVARANIGYDNYSRLPWLLRLCALMQfLAIIPLFALATPSSPINSQ 173
                 5556667788999******************************************999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.62
# Mc/sec: 974.00
//
Query:       MMETSP0890-20130614|4081_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-19   67.4   0.0    8.9e-19   67.3   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    5.1e-08   32.4   0.0    5.9e-08   32.2   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   1.3e-22   8.9e-19      17      75 ..       2      60 .]       1      60 [] 0.77

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 1.3e-22
   PF13306.1 17 itipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigen 75
                +t+p  +t+IgeyaF++c+sl++itlp slt+ig+ aF +c+slt++t+p  lt+ig++
  MMETSP0890-20130614|4081_1  2 LTLPAGLTTIGEYAFNDCTSLTQITLPASLTTIGDAAFRDCTSLTHLTLPAGLTTIGDY 60
                57788888888888888888888888888888888888888888888888888888775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   8.7e-12   5.9e-08       6      56 ..       2      50 ..       1      52 [. 0.93

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 8.7e-12
   PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                L L    l++i++ aF+++++L+ + L   +l++i + af +++sL++L L
  MMETSP0890-20130614|4081_1  2 LTLPAG-LTTIGEYAFNDCTSLTQITLP-ASLTTIGDAAFRDCTSLTHLTL 50
                566667.9********************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       110  (0.00804564); expected 273.4 (0.02)
Passed bias filter:                      108  (0.00789936); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.81
# Mc/sec: 177.51
//
Query:       MMETSP0890-20130614|4095_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-08   33.8   7.8    6.2e-08   32.6   5.4    1.8  1  PF07896.7 Protein of unknown function (DUF1674)


Domain annotation for each model (and alignments):
>> PF07896.7  Protein of unknown function (DUF1674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   5.4   4.6e-12   6.2e-08      22      47 .]      85     114 .]      49     114 .] 0.73

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.6e-12
                 -----.---...------------------ CS
   PF07896.7  22 gEiGG.pkg...pEPtRYGDWernGrvtDF 47 
                 +E GG  +g   pEPtR+GDWer+Gr++DF
  MMETSP0890-20130614|4095_1  85 REWGGpMRGgrfPEPTRFGDWERKGRTSDF 114
                 5666532223448***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.67
# Mc/sec: 407.74
//
Query:       MMETSP0890-20130614|4092_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   16.4  45.5    1.4e+04   -8.7  31.5    2.8  1  PF04886.7 PT repeat
  ------ inclusion threshold ------
      0.066   13.0   0.1        0.2   11.5   0.0    1.8  2  PF06667.7 Phage shock protein B
      0.087   12.0   3.2       0.17   11.0   2.2    1.4  1  PF08693.5 Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.7  31.5         3   1.4e+04       1      36 []      33      68 ..      33      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: -8.7 bits;  conditional E-value: 3
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36
                +p++ Pt++PT  PT  Pt++PT  Pt +Pt  Pt+
  MMETSP0890-20130614|4092_1 33 PPSSKPTAEPTPIPTLVPTPEPTPLPTPEPTPVPTP 68
                677777777777777777777777777777777764 PP

>> PF06667.7  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.3e-05       0.2       4      33 ..     106     135 ..     103     154 .. 0.75
   2 ?   -2.3   0.0      0.87     4e+03      52      63 ..     252     263 ..     247     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.3e-05
   PF06667.7   4 eflavplivfvlfvapiWliLHYrskkkks 33 
                  ++avp+++ +l++  + ++L Yr k  ++
  MMETSP0890-20130614|4092_1 106 AVIAVPVVIGFLLLVAVLIWLYYRRKLSNN 135
                 689******999998899*****9986654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.87
   PF06667.7  52 ekleeRietlEr 63 
                 e++++R +tl r
  MMETSP0890-20130614|4092_1 252 EQMQSRFHTLNR 263
                 79******9975 PP

>> PF08693.5  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.2   3.8e-05      0.17      13      39 ..     108     131 ..      99     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.8e-05
   PF08693.5  13 IAvgVviPVgvIalvLlaiLflvyRRk 39 
                 IAv Vvi+ +++++vL+  L+  yRRk
  MMETSP0890-20130614|4092_1 108 IAVPVVIGFLLLVAVLIW-LY--YRRK 131
                 9999************95.77..9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       639  (0.0467379); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:00.91
# Mc/sec: 1158.68
//
Query:       MMETSP0890-20130614|4098_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-91  305.4   0.0    2.3e-91  305.1   0.0    1.0  1  PF01115.12 F-actin capping protein, beta subunit


Domain annotation for each model (and alignments):
>> PF01115.12  F-actin capping protein, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.1   0.0   1.7e-95   2.3e-91       2     240 ..       6     240 ..       5     242 .. 0.96

  Alignments for each domain:
  == domain 1    score: 305.1 bits;  conditional E-value: 1.7e-95
  PF01115.12   2 ldaaldLlrrlppkkveenlesliklapelaedllssvdqpLkvkkdsesgkeyllcdyNrdgdSyRSpwsnkYepeleeedeeegavpseklRklEikaNeafdvyrdlyyeggvssvYlwdldeedgfagvvllkke.ekkeekksgkwdsihvfevteease.sasYkltstvilslkkkseakgelelsgsltrqkekdlkleddtshianiGrliEdmeaklrnllqevYfgktkd 240
                 ++++l+++rr+pp+++e+nl+ l++l+pe +++ll++vdqpL+ +++se+g +yllcdyNrdgdSyRSpwsnkYep ++     +g  ps++lR+lEi+aN+ fd+yr+ly+egg+ssvYlwdld++ gfag++l+kk+ e ++  ++g+wdsihv++v +++s+ +a+Yklt+tv+ls++ ++++ g+ +lsgsltr ++k+ +++ d  hianiG+liEdme+ +r+ l+ +Y++ktk+
  MMETSP0890-20130614|4098_1   6 VTSCLSIMRRMPPNNIEHNLSGLLNLVPEHTDELLQRVDQPLEEATCSETGLKYLLCDYNRDGDSYRSPWSNKYEPAID-----DGFLPSATLRELEIEANQLFDAYRELYFEGGTSSVYLWDLDDT-GFAGCFLIKKSvEGHRFVSDGAWDSIHVVQVDTKSSQtQATYKLTTTVMLSMDVHKNEVGDSNLSGSLTRVASKRCPISPDRPHIANIGTLIEDMETDIRTYLDALYIQKTKK 240
                 5789***************************************************************************.....9***************************************996.***********334455678***********99888769************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.96
# Mc/sec: 654.01
//
Query:       MMETSP0890-20130614|4117_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-16   59.4   0.0    2.7e-16   58.8   0.0    1.3  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.5e-14   53.6   0.0    2.2e-14   53.0   0.0    1.3  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    3.1e-10   39.6   0.0    4.5e-10   39.1   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0     6e-20   2.7e-16       1      70 []      20      90 ..      20      90 .. 0.98

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 6e-20
                EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70
                l ++nL++ v ++ L e F+ +G+i ++ ++ d   + ++gf+fVe+ ++e+ae+A++al+   ++gr +k
  MMETSP0890-20130614|4117_1 20 LLIKNLSYHVQKHHLQERFESYGRILDVHIPVDyHSREPRGFGFVEMSNREEAERAVQALDQSLFEGRHIK 90
                689*****************************************************************886 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   4.9e-18   2.2e-14       1      69 []      20      90 ..      20      90 .. 0.96

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 4.9e-18
   PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69
                l +++l++ v+   l e f++yg++ +v+ip + +  ++rgf+fve++++e+A++a+++l+   + gr+i+
  MMETSP0890-20130614|4117_1 20 LLIKNLSYHVQKHHLQERFESYGRILDVHIPVDYHsREPRGFGFVEMSNREEAERAVQALDqSLFEGRHIK 90
                689********************************9************************97888****97 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   9.9e-14   4.5e-10       1      53 [.      34      91 ..      34      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 9.9e-14
   PF13893.1  1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53
                L ++f+ +G++ +++i  +      +g++fve++++e+A++a+++l+  ++ g+ +kv
  MMETSP0890-20130614|4117_1 34 LQERFESYGRILDVHIPVDYhsrepRGFGFVEMSNREEAERAVQALDQSLFEGRHIKV 91
                5689************666669**99*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:01.07
# Mc/sec: 703.23
//
Query:       MMETSP0890-20130614|4116_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-47  158.9   0.2    1.2e-46  158.6   0.2    1.1  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.2   8.5e-51   1.2e-46       1     155 []      77     233 ..      77     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: 158.6 bits;  conditional E-value: 8.5e-51
  PF00160.16   1 lvdietss..kGrivieLfedkaPktvenFlklakeg...fYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde.kpeknvkiksvgv 155
                 ++di++++  +Gri +++  dk+P+t+ nFl+l++ +    Y++++fhrvi+gfm+qgGd+++++   +++    ge+++dE+  + lkh  +G+l+ma+ g  pn+ngsqFf++++++++lDgk++vFGkVvegmdvv+ ie+v++++ ++ k+v+i ++g+
  MMETSP0890-20130614|4116_1  77 FFDISIGDesAGRIIMQIRVDKVPRTATNFLELCTGKhgfGYKDCPFHRVIPGFMCQGGDFTNQDG--TGGkSIYGEKFEDEN--FLLKHsGPGVLSMANAG--PNTNGSQFFLCTAKTQWLDGKHVVFGKVVEGMDVVKSIESVGSQGgETDKKVVIADCGI 233
                 57888877889***********************7557789*******************888866..3222444447*****..68899789******998..7**************************************977666788899******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:01.32
# Mc/sec: 441.15
//
Query:       MMETSP0890-20130614|4136_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:02.09
# Mc/sec: 105.49
//
Query:       MMETSP0890-20130614|4127_1  [L=2192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-92  309.2   0.0    7.2e-81  271.3   0.0    2.2  2  PF04998.12 RNA polymerase Rpb1, domain 5
    1.1e-73  248.4   0.0    1.9e-73  247.5   0.0    1.4  1  PF04997.7  RNA polymerase Rpb1, domain 1
    3.4e-66  222.1   0.0    8.2e-66  220.9   0.0    1.7  1  PF00623.15 RNA polymerase Rpb1, domain 2
    8.9e-44  148.3   0.1    2.3e-43  147.0   0.1    1.8  1  PF04990.7  RNA polymerase Rpb1, domain 7
    8.6e-42  142.4   0.0    1.7e-41  141.4   0.0    1.6  1  PF04983.13 RNA polymerase Rpb1, domain 3
      4e-36  124.3   0.1    5.7e-35  120.6   0.0    2.6  2  PF04992.9  RNA polymerase Rpb1, domain 6
    2.8e-31  107.3   0.0      6e-31  106.2   0.0    1.6  1  PF05000.12 RNA polymerase Rpb1, domain 4
     0.0021   17.8 183.0      0.073   13.1   7.0   12.6 11  PF05001.8  RNA polymerase Rpb1 C-terminal repeat


Domain annotation for each model (and alignments):
>> PF04998.12  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.9e-12     5e-09       1      24 [.     818     841 ..     818     844 .. 0.96
   2 !  271.3   0.0   4.2e-84   7.2e-81      25     271 ..    1216    1894 ..    1206    1900 .. 0.99

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.9e-12
                 ---HHHHHHHH-------HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04998.12   1 GLtpqefffhtmggReGLiDTAvK 24 
                 GL+pqefffh+mggReGLiDTA K
  MMETSP0890-20130614|4127_1 818 GLSPQEFFFHAMGGREGLIDTACK 841
                 9*********************98 PP

  == domain 2    score: 271.3 bits;  conditional E-value: 4.2e-84
                  HHH---HHHHHHHHHTT-EEETTSEEE-----EEES------.........................................................................................................................................................................................................................................................S-----BT-THHHHH---TCTTCSSSSTST---TSSSS----HHHHHHHHT-SS-SS--EEEE-----TSTHHHHHHHHHHHS-........................................................................................................................................................................................E--TT--EEEEEEEEEEEE-----EEEEEEEEEEEE---HHHHTT---.-ETTTEEES-HHHHHHH-------HHHHHHHHHHHHH------HHHHHHHHHHHHC------SS----TTS. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04998.12   25 TaetGYlqRrLvkaledvvvkyddtvrnsggeivqflygedg.........................................................................................................................................................................................................................................................lvepGeavGiiAAQSiGEPgTQltlnTFHfaGvasknvtlgvprlkeilnvaknnkkpvltvllekkaekkkakakkvkeeeel........................................................................................................................................................................................vkegekvkagekltdgrvdpeeklekkekelllktegtelqevyklqgvidndktvsndikeilkvlgIeaaresilkeieevfkeegievnrrhlalladlmtakgvllgitraglnkek 271 
                  Ta+tGYlqRrLvk++e+v+vkyd+t r+++g+i+qf+ygedg                                                                                                                                                                                                                                                          ++ Ge+ G++AAQSiGEP+TQ+tlnTFHfaGv++knvtlgvprl+eilnvak++k+p+lt +l +++++ +ak ++ k e ++                                                                                                                                                                                        + + ++++++++++ ++ dpe++   k ke++l+t+gt+l +v+   + +d ++tvsndi+ei++v+gIe +r+++l+ ++ev+ ++g +vn+rh+a l+d+m+++g l++++r+g+n+ +
  MMETSP0890-20130614|4127_1 1216 TAQTGYLQRRLVKSMESVSVKYDGTARTNTGSIIQFMYGEDGvdatwvekqklpflllsdvelrhqycaleffqsvtevsdadvlmpntgsthnktltrtengdlaiicedrvvpldadvstecrrdptlidlledelkqlkvdrdalrvifahrepdkdadifsqlpvnlerliwnaqrqfecgprlrkavldprialhkvaklcatlrthrapggfnrkapetgeagnatvaevastatsapqqedatllfcilirstlvsrkcmfeyrltssaldwllgeiesrfhgaRAHSGEMCGVMAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLNEILNVAKTIKTPSLTIFLPPDTAEAQAKDIQAKLEYTTlgsvteltqiyydpdpeatvipddeelvaeyievpdedfdpkamspwllrielnraliadkklkmadiaaaisreygddlhtlysddnaeklvlririragvpgsgapensesnpntsillteqddlidadedelrggpnntmpaaasaeqspqaltqieeedddewiflrrveqamlkdlklrGTDRITKVYMKEENINVWDPETGALTKRKEYILETDGTNLAAVMADPD-VDHTRTVSNDIVEICEVMGIEGTRQALLQMLREVIGFDGAYVNYRHMAVLCDTMCFRGSLMAVSRHGINRGD 1894
                  9*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9999999***************************************************************************************************************************************************************************************99999999*****************************************.*********************************************************************974 PP

>> PF04997.7  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.0   1.1e-76   1.9e-73       6     338 .]       2     348 ..       1     348 [. 0.83

  Alignments for each domain:
  == domain 1    score: 247.5 bits;  conditional E-value: 1.1e-76
                 EEE-----HHHHHHH-S--............--SSSSS-SSS.SS------SST----SSSS-STTTB---TS-------EEEEEEEE----HHHHHHHHTTB-S----BSS-TTSH....HHHHHHHSSSHHHHHHHHHHHHTT--B--SEEE-SSS................TTSE........EE------B----EE--.--EE--B-SS.G----SS-B---B-HHHHHHHHHTS-HHHHHH---BTTTB-GGGSEEEEE----GGGS----SSSS-.----HHHHHHHHHHHHHHHHHHHHH----STTSHHHHHHHHHHHHHTT-S..S-------SS-------THHHHH----------- CS
   PF04997.7   6 evqfgiaspeeirkwSvve............vtkpetinekslkpeegGllderigtikkksiCetckeevtecrghfGhieLakPvfhigffkkvlsilkcvcvlcsslllseeekkfeekvvkkkkgkkkkkklkiinelckkksicekskeenenvk............delekl........eaaegcekkqpkiskegaealeellkks.eeeeelkeklrklnaekvlqilkkiskedveilgfnnsgskPewliltvlPVpPpeiRPsvqldgkr.taedDlteklreIikrNnrLkkleeegapehiireekrlLQehvatlfdn..eskgkpvasqkskrplksisqrLKGKeGRfRgNL 338
                 ++qfgi+sp+eir++Sv +            +t+ et+ ++  +   gG++d+r+g i ++           e  ghfGhieLa Pv+h+gf+k++l il+cvc++cs+ll+++++     +v++++  ++  ++l ++ +lc++ ++ce   + + + +            +    +        ++ +gc++ qpk++++g  +le +++k+ +      ++++ l+a +++++l++i+++ +++lg+n+++ +Pewli++vlPVpPp++RPs+ql+ ++ ++edDlt+++ +I+k+N +L+++ + g   h++++ ++lLQ++v + fdn    k   + +q+s++plk i+qrLKGKeGR+RgNL
  MMETSP0890-20130614|4127_1   2 AIQFGILSPDEIRSMSVTQktnfreqaveagITRYETFVNG--EAVYGGVNDPRMGDIAER-----------EDVGHFGHIELARPVYHLGFIKSTLMILRCVCFHCSRLLADHNDF----RVKRAQ-RLTGERRLAAMHTLCRNVTRCEFASAAELEAElnnaggingeaaS----TknveqqatNQVTGCGAPQPKFKRKGHVSLEVEFSKDdDFVPGSGDRKQILSAAQAREVLRHITDDTARMLGLNPKYVRPEWLIIQVLPVPPPHVRPSIQLSDSNaRSEDDLTHQYVSIVKANRTLEEVVKGGEAPHVVSQFEELLQYKVNAVFDNeaGAKDGVQETQRSGKPLKTIRQRLKGKEGRIRGNL 348
                 69**************8762222222222223444444444..444555555555555444...........478**************************************9988....666666.99999*****************88855544444445666554431....0344555779999**********************99888899999999***************************************************987766**************************************************443444557788***********************9 PP

>> PF00623.15  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   4.8e-69   8.2e-66       1     166 []     350     515 ..     350     515 .. 0.99

  Alignments for each domain:
  == domain 1    score: 220.9 bits;  conditional E-value: 4.8e-69
                 --B-S-B--EEEE----S-TTEE-EEHHHHHHHHHHHHHHHHHHTSS-S................SHHHHHHCCCSSS-.--HHHH...HHHHHHH----EEEEESS--S----EEEEEEEE----EE--CCCHHHHT------EEEEE---SHHHHHHHHHHCBG CS
  PF00623.15   1 GkrvdfsaRsvitpdpnlkldevgvPkelakkLtvpeivtklnikklkklvengknkypgakyieeekgakkklekkkeklakeleagkkvlrhvkkgdvvllNRqPtLhrlsimahrvrvlegktlrlnllvckayNaDFDGDemnlhvpqseearaEaeelmlv 166
                 GkrvdfsaR+vit+dpnl++d+vgvP+++ak+Ltvpe v ++n ++l++lv+ g++++pga+++ + +g++ +l++ k+  + +l+ g +v+rh++++d++++NRqP+Lh++sim+hrv+vl+++t+rlnl+v+++yNaDFDGDemnlhvpqs +araE+e+lm+v
  MMETSP0890-20130614|4127_1 350 GKRVDFSARTVITADPNLSIDQVGVPRSIAKTLTVPERVGQYNLRQLQELVKSGPEVWPGARFVIHADGRRVDLRYVKHLNDLALHPGFIVERHLRDDDIIVFNRQPSLHKMSIMGHRVKVLDHSTFRLNLSVTSPYNADFDGDEMNLHVPQSVAARAEIEQLMMV 515
                 9****************************************************************************999999999999***************************************************************************97 PP

>> PF04990.7  RNA polymerase Rpb1, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.1   1.4e-46   2.3e-43       1     135 []    1589    1774 ..    1589    1774 .. 0.92

  Alignments for each domain:
  == domain 1    score: 147.0 bits;  conditional E-value: 1.4e-46
   PF04990.7    1 ttLkkvtesteiyYDPdpentvieeDrelveeyfelpdeeeeleklspWllRleLdrekmldkklsmedvakkikeefgddlsviysddnaeklvlriRvkkee...................................................dekeededsae....eddkfLkkleselleeltLk 135 
                  ttL +vte t+iyYDPdpe tvi++D+elv ey+e+pde+ +++ +spWllR+eL+r+ + dkkl+m+d+a +i++e+gddl+  ysddnaeklvlriR++                                                      +    +  ++e    ++  fL+++e+++l++l+L+
  MMETSP0890-20130614|4127_1 1589 TTLGSVTELTQIYYDPDPEATVIPDDEELVAEYIEVPDEDFDPKAMSPWLLRIELNRALIADKKLKMADIAAAISREYGDDLHTLYSDDNAEKLVLRIRIRAGVpgsgapensesnpntsillteqddlidadedelrggpnntmpaaasaeqspQ----ALTQIEeeddDEWIFLRRVEQAMLKDLKLR 1774
                  89***************************************************************************************************9999******************************************999865541....22222221113449**************97 PP

>> PF04983.13  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.0     1e-44   1.7e-41       1     156 [.     518     679 ..     518     680 .. 0.95

  Alignments for each domain:
  == domain 1    score: 141.4 bits;  conditional E-value: 1e-44
                 GSCESTTTEESS---CTTC---TCCCSTT--CCHHHHHHHHHHSTT----..SSSSSBTSSS-EEEE-TCGGGTSHC--CCEHH-.-HCS........-SHCCETTSEEE---STTT--HHCCCHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHHH---B--STT CS
  PF04983.13   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsdkktvtlrpailvpkelwtgkqtfsrilpneinyerkp.nlek........gkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigD 156
                 n++spqs++Pv+givQDsll++  +T +d+f+++    +ll++  ++    v ++pai  p++lwtgkq+fs+++p+ +ny +   +  +        g+v+++ g+l++G++dkk++g +s gsl h++++e g++ ++ fl+++q ++++++ +  f++gigD
  MMETSP0890-20130614|4127_1 518 NVVSPQSNRPVMGIVQDSLLASARMTARDTFVSKPLLFNLLMWLGDN-WDGVIPEPAISHPVQLWTGKQVFSLVIPQGLNYSGRGaRK-NdgpyndadGNVIVQSGQLVAGIVDKKTLG-TSSGSLGHTIWLEKGPELCRSFLNHVQTVVNYWMVNTSFSVGIGD 679
                 89******************************************665.5569*******************************87533.347899999*********************.********************************************9 PP

>> PF04992.9  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.1   5.3e+03      90     128 ..     689     732 ..     685     746 .. 0.77
   2 !  120.6   0.0   3.3e-38   5.7e-35       1     187 []    1258    1506 ..    1258    1506 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.1
   PF04992.9  90 NlkRiIwnakkifk..idkrkrsdLsp...aeviegvkkLlkrl 128
                 N++  I+ ak + k  ++k +r dL+    ++ ie+ ++L++r+
  MMETSP0890-20130614|4127_1 689 NIEKTIDDAKLKVKelVQKGQRGDLETqpgRTMIESFEQLVNRV 732
                 89999999999888778999999998622347888888888873 PP

  == domain 2    score: 120.6 bits;  conditional E-value: 3.3e-38
   PF04992.9    1 lDaalvEkQkldtlklsdkkfekkYkldl.tdeeeelk................................kgvldeevlkelesdaelqklldeEyeqleedrellrkeifksge.aklp.....lpvNlkRiIwnakkifkidkrkr.sdLspaeviegvkkLlkrlvvvr.......................gedelskeaqenatllfqillRstLasKrvleehrLnkeaFewllgeIesrfqqa 187 
                  +Da++vEkQkl+ l lsd +++++Y      ++ +e++                                   ld +v +e ++d++l +ll++E +ql+ dr+ lr  if ++e +k +     lpvNl+R+Iwna+++f++  r r   L+p+  +++v kL+  l+  r                       ++   s  +qe+atllf il+RstL s++++ e+rL++ a++wllgeIesrf+ a
  MMETSP0890-20130614|4127_1 1258 VDATWVEKQKLPFLLLSDVELRHQYCALEfFQSVTEVSdadvlmpntgsthnktltrtengdlaiicedrVVPLDADVSTECRRDPTLIDLLEDELKQLKVDRDALR-VIFAHREpDKDAdifsqLPVNLERLIWNAQRQFECGPRLRkAVLDPRIALHKVAKLCATLRTHRapggfnrkapetgeagnatvaevASTATSAPQQEDATLLFCILIRSTLVSRKCMFEYRLTSSALDWLLGEIESRFHGA 1506
                  59********************99976553333444445666788888999999999999999999996555579999999**************************.55544442221123356******************88888699*********************9998888888888888877777667799***********************************************865 PP

>> PF05000.12  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   3.5e-34     6e-31       3     108 .]     707     811 ..     705     811 .. 0.96

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 3.5e-34
                 HHHCHCHCHHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHCS-.TT.HHHHHHH------HHHHHHHHT----EE----BS----TTSSSTTS-SSESSTTT-BTT CS
  PF05000.12   3 eaerygkledlpgksleelfeakinkilnkardkagkiakksla.anNslliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkkidespesrGFv 108
                 + +r g le +pg+++ e+fe+++n +ln a+ +ag ++++ l+   N+++ M+ +G+KG+ ini+qi++ +Gqqnvegkrip gf++rtlphf k+d +pe+rGFv
  MMETSP0890-20130614|4127_1 707 KGQR-GDLETQPGRTMIESFEQLVNRVLNAANVQAGLKVQETLSpY-NNIKAMAVAGSKGNDINIAQIIAAVGQQNVEGKRIPCGFKRRTLPHFAKDDLGPEARGFV 811
                 5667.999**********************************9955.***********************************************************8 PP

>> PF05001.8  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   6.9         8   1.4e+04       4      14 .]    2020    2033 ..    2003    2033 .. 0.88
   2 !   13.1   7.0   4.2e-05     0.073       2      14 .]    2035    2047 ..    2034    2047 .. 0.98
   3 !   13.1   7.0   4.2e-05     0.073       2      14 .]    2049    2061 ..    2048    2061 .. 0.98
   4 !   13.1   7.0   4.2e-05     0.073       2      14 .]    2063    2075 ..    2062    2075 .. 0.98
   5 !   13.1   7.0   4.2e-05     0.073       2      14 .]    2077    2089 ..    2076    2089 .. 0.98
   6 !    8.6   9.2    0.0012         2       2      14 .]    2091    2103 ..    2090    2103 .. 0.98
   7 ?    4.9   2.5     0.018        32       2      10 ..    2105    2113 ..    2104    2117 .. 0.91
   8 !   12.1   5.1   8.9e-05      0.15       3      14 .]    2120    2131 ..    2120    2131 .. 0.97
   9 !   11.6   7.2   0.00012      0.21       2      14 .]    2133    2145 ..    2132    2145 .. 0.97
  10 ?    0.1   8.7      0.64   1.1e+03       2      10 ..    2147    2163 ..    2146    2167 .. 0.70
  11 ?   -3.7   3.9         8   1.4e+04       1      13 [.    2177    2191 ..    2177    2192 .] 0.85

  Alignments for each domain:
  == domain 1    score: -6.0 bits;  conditional E-value: 8
   PF05001.8    4 SPaY.SP..tSPgy 14  
                  SP+Y SP   SP+y
  MMETSP0890-20130614|4127_1 2020 SPSYaSPeyASPAY 2033
                  89999999999988 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF05001.8    2 PaSPaYSPtSPgy 14  
                  PaSPaYSPtSPgy
  MMETSP0890-20130614|4127_1 2035 PASPAYSPTSPGY 2047
                  9***********9 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF05001.8    2 PaSPaYSPtSPgy 14  
                  PaSPaYSPtSPgy
  MMETSP0890-20130614|4127_1 2049 PASPAYSPTSPGY 2061
                  9***********9 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF05001.8    2 PaSPaYSPtSPgy 14  
                  PaSPaYSPtSPgy
  MMETSP0890-20130614|4127_1 2063 PASPAYSPTSPGY 2075
                  9***********9 PP

  == domain 5    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF05001.8    2 PaSPaYSPtSPgy 14  
                  PaSPaYSPtSPgy
  MMETSP0890-20130614|4127_1 2077 PASPAYSPTSPGY 2089
                  9***********9 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.0012
   PF05001.8    2 PaSPaYSPtSPgy 14  
                  PaSPaYSP+SP+y
  MMETSP0890-20130614|4127_1 2091 PASPAYSPSSPSY 2103
                  9***********9 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.018
   PF05001.8    2 PaSPaYSPt 10  
                  P SPaYSP+
  MMETSP0890-20130614|4127_1 2105 PQSPAYSPS 2113
                  9*******7 PP

  == domain 8    score: 12.1 bits;  conditional E-value: 8.9e-05
   PF05001.8    3 aSPaYSPtSPgy 14  
                  aSPaYSPtSPgy
  MMETSP0890-20130614|4127_1 2120 ASPAYSPTSPGY 2131
                  8**********9 PP

  == domain 9    score: 11.6 bits;  conditional E-value: 0.00012
   PF05001.8    2 PaSPaYSPtSPgy 14  
                  PaSPaYSPtSP+y
  MMETSP0890-20130614|4127_1 2133 PASPAYSPTSPAY 2145
                  9**********99 PP

  == domain 10    score: 0.1 bits;  conditional E-value: 0.64
   PF05001.8    2 PaSPaYSP........t 10  
                  PaSPaYSP        t
  MMETSP0890-20130614|4127_1 2147 PASPAYSPasydpssvT 2163
                  9*******555555555 PP

  == domain 11    score: -3.7 bits;  conditional E-value: 8
   PF05001.8    1 SPaSPa..YSPtSPg 13  
                  +P SP+  Y P+ P+
  MMETSP0890-20130614|4127_1 2177 NPQSPSseYDPSAPN 2191
                  79***778***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.79u 0.34s 00:00:03.13 Elapsed: 00:00:02.96
# Mc/sec: 1774.60
//
Query:       MMETSP0890-20130614|4139_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.79    8.9   7.5       0.43    9.8   3.0    2.1  2  PF06021.6 Aralkyl acyl-CoA:amino acid N-acyltransferase
        9.9    3.2  50.6         13    2.7  35.1    1.1  1  PF12128.3 Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> PF06021.6  Aralkyl acyl-CoA:amino acid N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.0   6.3e-05      0.43     100     161 ..     128     188 ..     104     207 .. 0.76
   2 ?    1.4   0.2     0.024   1.7e+02      81     145 ..     179     246 ..     177     284 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.3e-05
   PF06021.6 100 hlqiqssqssLnevikklaasksvkvkktkailyvaeetakklvsslldtkllsaesgkpka 161
                 +l++ ++q++  e+++++  +   k+++t++il +++e +kk + sl ++k  +++ +k  +
  MMETSP0890-20130614|4139_1 128 ELKLEATQKQ-AETVQAIYEQTAAKLEETENILKMTQEAEKKALDSLKEAKRDNTGLQKLLE 188
                 4666677765.68899999********************************96666555443 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.024
   PF06021.6  81 dpkklqevLessevinWkqhlqiqssqssLnevi...kklaasksvkvkktkailyvaeetakklvss 145
                 d   lq++Le+ ++   k++ q+  s+++ +      ++ ++++ +++ +  ++++ ++e+++k++  
  MMETSP0890-20130614|4139_1 179 DNTGLQKLLEKRDIEYRKKTAQLEKSKDEWKAIAletRAQTKTQILDISTLATMMFRTTEVNEKKIRN 246
                 66677889999999999999999999888776541113444455566666667777666666666544 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  35.1    0.0019        13     259     536 ..      41     324 ..      25     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0019
   PF12128.3 259 eslllkLqllhvelkadeerleeeqeevkeakkelkeqlrtledelkeasdelnqelsaanakleakeselea.leeqkkkfedkdie..klkadldqlpsirseleeveaeldaltekvqdvqekferrkqkikeql...eeeleknkerleaireekerqkaaieealealesqlrkqleaqkeelneeekel..esrleelklrldsatateeeleqleaadealekaqeelekaeaevealqseeeqlrkkrdealealqkaerrleelrealeeleeqllP 536
                 + l++++q  + +lk+   + +  + e++e  ++  ++l++le++ +++ + ++++l +++ ++e+++++l+a lee+++  + +d+   kl+a + q++ +++ +e++ a+l+  te++ +++++ e++     ++    ++ l+k+ e+++  + +k +q+++ +++ +a+  + r+q + q+++++  +  +  + +++e+k r ++  + +  + +le +++  +ka++e++ ++ +  ++ se++q++ +    ++al+k e++  + r+++++le  l+ 
  MMETSP0890-20130614|4139_1  41 KNLIKRAQIAEEKLKKSRGEYAALLVERDEFIAQRDAELDALEAATEQSLK-AQNRLRDLESQIERAQKRLNAaLEESAQLSQANDALelKLEATQKQAETVQAIYEQTAAKLEE-TENILKMTQEAEKKALDSLKEAkrdNTGLQKLLEKRDIEYRKKTAQLEKSKDEWKAIALETRAQTKTQILDISTLATMMfrTTEVNEKKIRNEAERLRQAAKSDLELSESLRRKAEQEARVRTTRALEAASERQQAEFDLKITKDALRKLEQAELNARNNIAQLEAELDS 324
                 56788899999999999999999999****************999887765.6789***************97266666666666665125566788899999999999999987.6777788888877765544444000455667777788899999999*************************998654431256777888888888999999***************************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2257  (0.165082); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.30u 0.38s 00:00:01.68 Elapsed: 00:00:02.39
# Mc/sec: 364.97
//
Query:       MMETSP0890-20130614|4138_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   14.7   0.1      0.041   14.0   0.1    1.4  1  PF02036.12 SCP-2 sterol transfer family


Domain annotation for each model (and alignments):
>> PF02036.12  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     3e-06     0.041       9     101 .]     156     249 ..     148     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3e-06
  PF02036.12   9 dp.eakealkklagkvirfdltdeklsltldlkegqlrvlakdeekadvtlsls.ladlleladgklnptkafmqgkLkieGDielamkleallk 101
                 d+ +a++a+++l++k++ fd+ d + +l++  + +++ ++ + ++   ++++++ l++l + ++ + ++ + +++   k++GD + a++le+l+k
  MMETSP0890-20130614|4138_1 156 DQvQAEDAAAALSNKTLSFDIGDGHAALWIKTNTKKIVAVVGNDHLMATHIYMKaLDRLRSTIQNDNDAISSIFT-NYKVDGDENDATRLETLVK 249
                 566899****************************99999888888899999997256677777888677777665.6899999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 1049.31
//
Query:       MMETSP0890-20130614|4137_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-57  194.4   0.0    2.4e-57  193.7   0.0    1.4  1  PF01434.13 Peptidase family M41
    7.8e-47  158.6   0.0    6.2e-44  149.2   0.0    2.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    7.9e-07   29.1   0.0     0.0091   15.9   0.0    3.5  2  PF13401.1  AAA domain
    8.3e-06   24.8   0.0    6.2e-05   22.0   0.0    2.3  3  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    4.6e-05   24.0   0.1    0.00016   22.3   0.0    1.9  1  PF13207.1  AAA domain
    7.4e-05   21.5   0.1    0.00014   20.5   0.1    1.4  1  PF06068.8  TIP49 C-terminus
    0.00011   21.7   0.2    0.00055   19.5   0.1    2.3  1  PF13245.1  Part of AAA domain
    0.00016   21.2   0.4     0.0043   16.6   0.2    3.0  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0002   21.1   0.0       0.01   15.6   0.0    2.4  2  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00029   21.1   2.2     0.0015   18.8   0.1    2.8  3  PF13191.1  AAA ATPase domain
     0.0017   18.1   0.0     0.0069   16.1   0.0    2.1  2  PF13671.1  AAA domain
     0.0044   16.8   0.0      0.073   12.8   0.0    2.4  2  PF13173.1  AAA domain
     0.0094   15.8   0.0      0.024   14.4   0.0    1.7  1  PF13521.1  AAA domain
     0.0097   15.2   0.0      0.026   13.8   0.0    1.6  1  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.014   14.4   0.0      0.028   13.4   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.014   14.4   0.0      0.029   13.3   0.0    1.5  1  PF06414.7  Zeta toxin
      0.025   13.8   1.9        2.4    7.4   0.1    3.1  3  PF13481.1  AAA domain
      0.053   12.8   0.0       0.14   11.4   0.0    1.7  1  PF00158.21 Sigma-54 interaction domain
      0.063   13.3   0.1       0.32   11.0   0.0    2.2  1  PF06480.10 FtsH Extracellular
      0.079   12.2   0.0       0.18   11.0   0.0    1.5  1  PF13398.1  Peptidase M50B-like
        0.1   12.7   0.0       0.22   11.7   0.0    1.6  1  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.0   3.7e-60   2.4e-57       3     212 ..     444     666 ..     442     667 .. 0.86

  Alignments for each domain:
  == domain 1    score: 193.7 bits;  conditional E-value: 3.7e-60
                 HHHHHCCHHHH------......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01434.13   3 keleeaidrvlaGlekk......srvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlflpeedkll...ltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmseklGpvaleee...eeeevflgrelkkekelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeiee 212
                 +e++ aidr+ +G++k+      s+  + ++++lvAyHEaGHa++++l+++ d+v+KvtiiPR + a+G+tlf+p+ed+++   ++ ++l +++av+lgGr+aEel+fg +evttGasnDl++v +lar+m++++G+  +    a+ ++    e+    ++ +   ++ s +t++ id+evk+lv+eay ++k++lk+n   +e+l e+L+e+Et+d+  +++
  MMETSP0890-20130614|4137_1 444 DEIDYAIDRLTVGMQKQatspgqSKESRLRRQTLVAYHEAGHAIMAALTPGYDNVAKVTIIPRSNgAGGFTLFTPSEDRMEsglYSLRYLKSQLAVALGGRVAEELAFGVEEVTTGASNDLQQVRNLARRMIAQWGFRATADANAILDApvaWETPDAGQQMFGGPQTASGSTEQLIDAEVKALVSEAYATCKKTLKDNWALMEKLKEELIENETVDSGALQN 666
                 799************9843111122333345679*********************************************988889****************************************************98777655544311123233455667788999***********************************************9987765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.0   9.6e-47   6.2e-44       1     131 [.     248     381 ..     248     382 .. 0.95
   2 !    7.0   0.0    0.0089       5.8      30      74 ..     406     453 ..     392     482 .. 0.79

  Alignments for each domain:
  == domain 1    score: 149.2 bits;  conditional E-value: 9.6e-47
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vll GppGtGKTlla+ava e+gv+f+++sgse+++++vg ++++ir lf +ak++a p+i+fiDEida++++r      ++++e+e+++nq+lte+dg++ +++ vivi+atnr d ld+allr gRfdr++ ++
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEMFVGVGASRIRSLFADAKKNA-PCIIFIDEIDAIGRQRagggGFATNDEREQTLNQILTEMDGFSGNTG-VIVIAATNRGDILDNALLRpGRFDRRVPVD 381
                 79******************************************************9.****************997555699*******************866.*************************99775 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0089
                 ECCSSSSST-HHHHHHHHHHHHHHHHTS...-SEEEEEETGGGC-HHH CS
  PF00004.24  30 sgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksr 74 
                 +  ++ s ++g s + +++l++ea   a   ++ ++ +DEid  + + 
  MMETSP0890-20130614|4137_1 406 DIDSIASRTIGFSGASLQNLMNEAAIVAarnGKDVITFDEIDYAIDRL 453
                 556677788999999999999998777777677*********876654 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-05    0.0091       4      34 ..     245     274 ..     242     364 .. 0.61
   2 ?    5.5   0.0     0.024        15      39      98 ..     390     448 ..     373     478 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-05
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaea 34 
                  + +++ G++G+GKT+l+r +a ++  ++++
  MMETSP0890-20130614|4137_1 245 PRGVLLEGPPGTGKTLLARAVAGEA-GVPFI 274
                 5678999*************99864.23333 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.024
   PF13401.1  39 rvvfveapastspkel.lqkllsalglpakgrltteellealqealrrrrtrlliiDEaqr 98 
                 ++++v + ++  ++++    ++s         ++ + l++  + +++r++++++  DE+++
  MMETSP0890-20130614|4137_1 390 EILKVHCRDKPLASDVdIDSIASRTIGFSG--ASLQNLMNEAAIVAARNGKDVITFDEIDY 448
                 555555555553333335555555554333..599****9999999999999********9 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   9.5e-08   6.2e-05      51     113 ..     246     316 ..     202     321 .. 0.78
   2 ?   -1.8   0.0       1.7   1.1e+03      34      55 ..     348     369 ..     329     372 .. 0.78
   3 ?   -1.7   0.0       1.7   1.1e+03      82     111 ..     418     447 ..     410     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.5e-08
   PF05496.7  51 dhvllyGpPGlGkttlakiiakelgvelkvtsgPvlek......agdlaalltnleekd..vlfideihrl 113
                   vll GpPG Gkt la+ +a e gv + +tsg           a+ + +l+++ +++   ++fidei  +
  MMETSP0890-20130614|4137_1 246 RGVLLEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEmfvgvgASRIRSLFADAKKNApcIIFIDEIDAI 316
                 569*****************************986433122222456667777766654448899998765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.7
   PF05496.7  34 eklkifieaakkreealdhvll 55 
                  +  +++ aa +r++ ld  ll
  MMETSP0890-20130614|4137_1 348 GNTGVIVIAATNRGDILDNALL 369
                 566789999999***9999998 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.7
   PF05496.7  82 sgPvlekagdlaalltnleekdvlfideih 111
                 sg  l++  + aa++++ + kdv+  dei 
  MMETSP0890-20130614|4137_1 418 SGASLQNLMNEAAIVAARNGKDVITFDEID 447
                 778888889999****************95 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.4e-07   0.00016       2      35 ..     248     292 ..     248     401 .. 0.60

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.4e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B-.........- CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..ll.........r 35 
                 +++ GppG+GK+ la+++a + g+p +s++   ++         r
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGEAGVPFISTSGseFVemfvgvgasR 292
                 6899***********************999843223343333331 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.2e-07   0.00014      49      88 ..     244     281 ..     236     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.2e-07
   PF06068.8  49 aGravLlaGppgtGktalaiaiskelgedvpfvalsgsev 88 
                 + r+vLl GppgtGkt la a++ e g  vpf++ sgse+
  MMETSP0890-20130614|4137_1 244 SPRGVLLEGPPGTGKTLLARAVAGEAG--VPFISTSGSEF 281
                 679**********************98..*********97 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   8.4e-07   0.00055       9      32 ..     245     266 ..     239     295 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 8.4e-07
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiia 32 
                 ++++ ++ G+PGtGKT +la+++a
  MMETSP0890-20130614|4137_1 245 PRGV-LLEGPPGTGKT-LLARAVA 266
                 4455.55*********.7777766 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   6.6e-06    0.0043       1      82 [.     247     321 ..     247     371 .. 0.60
   2 ?   -0.6   0.0       1.3   8.7e+02      56      77 ..     428     449 ..     419     472 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.6e-06
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------.G-SEEEEESGGG---HHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar.egeilvlDEveraesevl 82 
                 +vlL GppGtgK+ la+ +a   + ++    ++++ +    +g  +          s + +a +  ++i+++DE++ + ++ +
  MMETSP0890-20130614|4137_1 247 GVLLEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEMFVGVGASR--------IRSLFADAKKnAPCIIFIDEIDAIGRQRA 321
                 59*****************998888888777777665443344434........44444444446778888888887775444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.3
                 .--------G-SEEEEESGGG- CS
   PF07728.9  56 dsplvraaregeilvlDEvera 77 
                 ++++v a + ++++ +DE++ a
  MMETSP0890-20130614|4137_1 428 EAAIVAARNGKDVITFDEIDYA 449
                 455664444789*******965 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-05      0.01       6      83 ..     248     319 ..     245     346 .. 0.79
   2 ?    2.7   0.0      0.14        93      58      83 ..     427     452 ..     416     467 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG---- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk 83 
                 +ll gp g+Gkt+la+a+a    v    ++i    se+ e      + ++ i +  ++ +++   i+++DEid i ++
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGEAGV----PFISTSGSEFVE--MFVGVGASRIRSLFADAKKNAPCIIFIDEIDAIGRQ 319
                 5789******************98....************..44455556666666777777777*********9996 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.14
                 HHTTT-HHHHT--..-EEEETGGG---- CS
   PF07724.9  58 gappgyvgaeegG..ivllDEidKihpk 83 
                  ++    +   +G  ++ +DEid +  +
  MMETSP0890-20130614|4137_1 427 NEAAIVAA--RNGkdVITFDEIDYAIDR 452
                 33333333..34446********88765 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.3e-06    0.0015      17      44 ..     238     266 ..     222     285 .. 0.80
   2 ?   -0.8   0.0       2.5   1.6e+03     121     145 ..     296     318 ..     288     344 .. 0.72
   3 ?   -0.9   0.1       2.6   1.7e+03      55     113 ..     546     616 ..     533     633 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.3e-06
   PF13191.1  17 rrvsegsp.lllvtGpsGiGKSsLlrela 44 
                 ++v + sp  +l+ Gp+G+GK+ L+r++a
  MMETSP0890-20130614|4137_1 238 SKVGAQSPrGVLLEGPPGTGKTLLARAVA 266
                 5566667789*****************54 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.5
   PF13191.1 121 ldaalartrrpklvlvlDDlqwadr 145
                 l a++++++  ++++++D+++   r
  MMETSP0890-20130614|4137_1 296 LFADAKKNA--PCIIFIDEIDAIGR 318
                 444555555..59*****8665544 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 2.6
   PF13191.1  55 aagkfdqllrnlpysaiiqa..lrellrqlltelaaelggwreallaalga...........lipelegiig 113
                 a++  + +++ + ++a  ++  +r l+r+ + + + ++ +++ a+l+a  a            +p+ ++  +
  MMETSP0890-20130614|4137_1 546 AEELAFGVEEVT-TGASNDLqqVRNLARRMIAQWGFRATADANAILDAPVAwetpdagqqmfGGPQTASGST 616
                 444444444442.22222223599999999999999999888888888777666666555555555554444 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-05    0.0069       2      31 ..     248     277 ..     248     396 .. 0.82
   2 ?   -2.7   0.0       6.5   4.2e+03      50      78 ..     566     593 ..     548     642 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.1e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqd 31 
                 vll G+pG+GK+ la++++ + g  ++s+ 
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGEAGVPFISTS 277
                 7899******************98888875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 6.5
   PF13671.1  50 rvlkrlyqilnklarkalsagrsvivdat 78 
                 +v++ +++++ +    +++a +++i+da+
  MMETSP0890-20130614|4137_1 566 QVRNLARRMI-AQWGFRATADANAILDAP 593
                 4444444443.333345555556666655 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00011     0.073       5      74 ..     248     330 ..     244     368 .. 0.71
   2 ?    1.1   0.0      0.48   3.1e+02      52      74 ..     429     450 ..     387     462 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe....llelfleklkekkkylflDEiqev.............p 74 
                 ++++Gp ++GKt l++ +a e      + +i+    e+ ++        + +lf + +k+   ++f+DEi  +             +
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGEAG----VPFISTSGSEFVEMFVGVgasrIRSLFADAKKNAPCIIFIDEIDAIgrqraggggfatnD 330
                 899***************98877....7777777777755442112234677888876667888******98855555555555554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.48
   PF13173.1  52 elfleklkekkkylflDEiqevp 74 
                  +++  ++++k ++ +DEi ++ 
  MMETSP0890-20130614|4137_1 429 AAIVA-ARNGKDVITFDEIDYAI 450
                 22222.345999*******9875 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.7e-05     0.024       2      37 ..     248     284 ..     247     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.7e-05
   PF13521.1   2 ivitGgpstGKTtlleaLa.argypvvpEvarevlee 37 
                 + + G+p+tGKT l++a+a + g+p +   + e++e 
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAgEAGVPFISTSGSEFVEM 284
                 6789***************556***998888888765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.9e-05     0.026      49      71 ..     247     269 ..     242     284 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.9e-05
  PF01695.12  49 nlvllGpsGvGKthlAialgvea 71 
                  ++l Gp+G+GKt lA a++ ea
  MMETSP0890-20130614|4137_1 247 GVLLEGPPGTGKTLLARAVAGEA 269
                 6899**************99876 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-05     0.028      17      43 ..     240     266 ..     226     276 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.3e-05
  PF01078.16  17 iaaaGgHnlllvGppGsGKtmlakrlp 43 
                 + a     +ll GppG+GKt+la++++
  MMETSP0890-20130614|4137_1 240 VGAQSPRGVLLEGPPGTGKTLLARAVA 266
                 556666779**************9875 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.4e-05     0.029      13      46 ..     242     274 ..     230     299 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.4e-05
   PF06414.7  13 qekpkavllgGqpGAGKtslaellleelaagniv 46 
                  ++p+ vll G+pG GKt la+++ +e+ +  ++
  MMETSP0890-20130614|4137_1 242 AQSPRGVLLEGPPGTGKTLLARAVAGEA-GVPFI 274
                 489*********************9998.55555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0036       2.4      36      57 ..     248     269 ..     219     292 .. 0.79
   2 ?    4.3   0.0     0.031        20     130     185 ..     293     356 ..     273     359 .. 0.86
   3 ?   -0.9   0.0       1.2     8e+02      46      74 ..     534     559 ..     532     636 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0036
   PF13481.1  36 tllaGapgtGKStlalqlaaav 57 
                 +ll G+pgtGK+ la + a+ +
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGEA 269
                 5899**********98888754 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.031
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg.......densnsdv..gaviaalerlakrtgaavll 185
                 ++ l a +++ + p ++ iD ++++ ++         n+++++  ++++ +++ +  +tg+ v+ 
  MMETSP0890-20130614|4137_1 293 IRSLFADAKK-NAPCIIFIDEIDAIGRQraggggfATNDEREQtlNQILTEMDGFSGNTGVIVIA 356
                 6778888888.77********999887777778998888888779****************9985 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1.2
   PF13481.1  46 KStlalqlaaavatGepflg.pvvpepgrV 74 
                 KS la++l+++va+   f g +   e  + 
  MMETSP0890-20130614|4137_1 534 KSQLAVALGGRVAEELAF-GvE---EVTTG 559
                 899999999999975544.422...22233 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.14      18      43 ..     241     266 ..     229     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00022
                 HTTS-S-EEEE-------HHHHHHHH CS
  PF00158.21  18 vaktdltvlitGesGtGKellAraih 43 
                  a+++  vl++G  GtGK+llAra+ 
  MMETSP0890-20130614|4137_1 241 GAQSPRGVLLEGPPGTGKTLLARAVA 266
                 4678899****************985 PP

>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00049      0.32      26      99 ..      77     138 ..      58     147 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00049
  PF06480.10  26 spkeisyseFledleagnvskvvvdestispalirrptgdgvsktkkgnstttyytptlgsvdslekkLeealk 99 
                 ++ +   seF ++l++++v++vv+            + + + + +++g++  ++  p+  +v++l k L+++++
  MMETSP0890-20130614|4137_1  77 DGSRWAVSEFFTNLDSNSVERVVFSA----------DSKELLALDADGGRHAVEILPS--QVPELVKALRNKEV 138
                 5556667******************4..........4444889999999999999988..66666666666655 PP

>> PF13398.1  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.18      24      51 ..     477     506 ..     467     543 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00027
   PF13398.1  24 vvlvHElGHalaalltGg..rvkgielhsd 51 
                  v  HE+GHa++a lt g  +v ++++ ++
  MMETSP0890-20130614|4137_1 477 LVAYHEAGHAIMAALTPGydNVAKVTIIPR 506
                 6889************87345777777666 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00034      0.22       1      21 [.     248     268 ..     248     313 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00034
   PF13238.1   1 IlitGtpGvGKtTlakeLaer 21 
                 +l+ G+pG+GKt la++ a +
  MMETSP0890-20130614|4137_1 248 VLLEGPPGTGKTLLARAVAGE 268
                 789*************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.80
# Mc/sec: 2039.90
//
Query:       MMETSP0890-20130614|4142_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 149.34
//
Query:       MMETSP0890-20130614|4151_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   15.2   5.3       0.45   10.4   0.4    2.5  2  PF01315.17 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
      0.041   13.9  10.7       0.16   12.0   0.4    3.4  3  PF11565.3  Alpha helical Porin B
          1    9.3   5.3         26    4.8   0.1    3.7  4  PF07308.8  Protein of unknown function (DUF1456)
        1.6    8.8  11.9        6.3    6.8   0.4    2.6  2  PF06243.6  Phenylacetic acid degradation B
        2.6    7.6   6.2        5.6    6.5   0.8    2.5  2  PF13046.1  Protein of unknown function (DUF3906)


Domain annotation for each model (and alignments):
>> PF01315.17  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0025       6.9      78     101 ..       8      31 ..       1      36 [. 0.84
   2 ?   10.4   0.4   0.00016      0.45      53     101 ..     125     177 ..     106     178 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0025
                 ESSTT-EEEEEEESSHHHHHHHHC CS
  PF01315.17  78 vrfvgqivalVvAedeeaArkAae 101
                  ++  q va+  A+dee+A++ ae
  MMETSP0890-20130614|4151_1   8 KTHNSQLVAALRARDEEHAKALAE 31 
                 46889**************99876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00016
                 CCSCTEEEE...-SSCS.EEEESS-.SSEESSTT-EEEEEEESSHHHHHHHHC CS
  PF01315.17  53 vpeknkeig...asaeedeedalla.kdkvrfvgqivalVvAedeeaArkAae 101
                 + e+ ++ +    +ae ++ +++la ++  ++  q va+  A+dee+A++ ae
  MMETSP0890-20130614|4151_1 125 LHENAQAALtskHAAELESRTEMLAlEKDKTHNSQLVAALRARDEEHAKALAE 177
                 5555544443332222222233444144557889**************99876 PP

>> PF11565.3  Alpha helical Porin B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   5.8e-05      0.16      34      76 ..       4      47 ..       1      51 [. 0.88
   2 ?    2.1   0.6     0.076   2.1e+02      37      58 ..      71      92 ..      57     147 .. 0.78
   3 ?    5.2   0.4    0.0078        21      30      57 ..     146     173 ..     116     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.8e-05
   PF11565.3 34 lveeestrseLaaalrekaanf.aaqfeqlGeldegyaariadR 76
                l ++++++s+L aalr++ ++   a  e+  el +++++ ia+R
  MMETSP0890-20130614|4151_1  4 LEKDKTHNSQLVAALRARDEEHaKALAEREAELKAQHSKMIAER 47
                6678999************99956777899*************9 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.076
   PF11565.3 37 eestrseLaaalrekaanfaaq 58
                e  + +++aaalre+ ++ a +
  MMETSP0890-20130614|4151_1 71 ERVHAEQMAAALRERDESHAGE 92
                5566789999999999876654 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0078
   PF11565.3  30 aatGlveeestrseLaaalrekaanfaa 57 
                 ++  l ++++++s+L aalr++ ++ a 
  MMETSP0890-20130614|4151_1 146 EMLALEKDKTHNSQLVAALRARDEEHAK 173
                 55678899999*********99987654 PP

>> PF07308.8  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.031        84      24      51 ..       3      30 ..       1      36 [. 0.79
   2 ?    1.3   0.1      0.12   3.2e+02      26      46 ..      69      89 ..      60     103 .. 0.78
   3 ?   -0.3   0.1      0.38     1e+03      14      42 ..     108     136 ..     100     154 .. 0.77
   4 ?    4.8   0.1    0.0095        26      21      50 ..     146     175 ..     140     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.031
   PF07308.8 24 klagvevtkeelsallkkedeenykecs 51
                +l + +  +++l a l+ +dee+ k + 
  MMETSP0890-20130614|4151_1  3 ALEKDKTHNSQLVAALRARDEEHAKALA 30
                5666677899***********9987765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.12
   PF07308.8 26 agvevtkeelsallkkedeen 46
                 + +v  e++ a l+++de +
  MMETSP0890-20130614|4151_1 69 EKERVHAEQMAAALRERDESH 89
                566899999*****9988874 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.38
   PF07308.8  14 lkdddmveifklagvevtkeelsallkke 42 
                 lk+ d+ ++++l++ +  +e+ +a l+ +
  MMETSP0890-20130614|4151_1 108 LKERDLAHATALSEAKELHENAQAALTSK 136
                 78889999999999888888888888765 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.0095
   PF07308.8  21 eifklagvevtkeelsallkkedeenykec 50 
                 e+++l + +  +++l a l+ +dee+ k +
  MMETSP0890-20130614|4151_1 146 EMLALEKDKTHNSQLVAALRARDEEHAKAL 175
                 78889999999*************998766 PP

>> PF06243.6  Phenylacetic acid degradation B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.4     0.004        11      13      81 ..       7      76 ..       4     129 .. 0.77
   2 ?    6.8   0.4    0.0023       6.3      13      37 ..     153     177 ..     143     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.004
   PF06243.6 13 tegaplqhvgsvhApdaemAlltArevfvrRkeavslwvvpeekitdsdpeekeslfapak.dktYrtaq 81
                +++++ q v  ++A d+e+A+  A +    + +  ++ + +e+ ++++ +  +   + + + +k+  +a+
  MMETSP0890-20130614|4151_1  7 DKTHNSQLVAALRARDEEHAKALAEREAELKAQHSKMIAEREASLREEHQAAVADATRRVEsEKERVHAE 76
                56778899****************9998888888888888888887776666544444433044444444 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0023
   PF06243.6  13 tegaplqhvgsvhApdaemAlltAr 37 
                 +++++ q v  ++A d+e+A+  A 
  MMETSP0890-20130614|4151_1 153 DKTHNSQLVAALRARDEEHAKALAE 177
                 56778899*************9996 PP

>> PF13046.1  Protein of unknown function (DUF3906)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.8    0.0021       5.6      10      56 ..       9      57 ..       4      62 .. 0.76
   2 ?    3.3   0.2     0.021        56      10      35 ..     155     180 ..     149     182 .] 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0021
   PF13046.1 10 lkekiisivivAedeEkAFrlae..veLeksylkvPevtelslfEKKki 56
                ++++++ + + A deE+A +lae   eL+ +  k+   +e sl+E  ++
  MMETSP0890-20130614|4151_1  9 THNSQLVAALRARDEEHAKALAEreAELKAQHSKMIAEREASLREEHQA 57
                566677777889****988887622678889999999999999997765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.021
   PF13046.1  10 lkekiisivivAedeEkAFrlaeveL 35 
                 ++++++ + + A deE+A +lae e 
  MMETSP0890-20130614|4151_1 155 THNSQLVAALRARDEEHAKALAEREA 180
                 566777777889*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1505  (0.110079); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:01.00
# Mc/sec: 436.14
//
Query:       MMETSP0890-20130614|4147_1  [L=1986]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-19   67.9   0.0    1.7e-18   66.8   0.0    1.6  1  PF14180.1  GTP-GDP exchange factor
    7.9e-15   54.8   0.0    2.5e-14   53.1   0.0    1.8  2  PF14429.1  C2 domain in Dock180 and Zizimin proteins
    5.5e-14   51.7   0.0    1.1e-13   50.7   0.0    1.5  1  PF06920.8  Dedicator of cytokinesis
  ------ inclusion threshold ------
      0.062   13.0   0.0       0.17   11.6   0.0    1.7  1  PF00168.25 C2 domain
       0.14   11.0   0.0       0.24   10.2   0.0    1.2  1  PF02289.11 Cyclohydrolase (MCH)


Domain annotation for each model (and alignments):
>> PF14180.1  GTP-GDP exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   6.3e-22   1.7e-18       2     171 ..     362     645 ..     361     648 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 6.3e-22
   PF14180.1   2 frndlyvypkslelskqkkskaknilvkvel.resdgeksk.ekksiilntssgpslvssafssvlyhnknpnFndeiKlkLPldlte.khhLlFtfyhvsvkkkkkkkekpigyaflpLl....eqdgt.................................lsdgeheLpvyk.elppgylsen.sk............................................................................sqseklvdnkkpvfkvstrlvSt 171
                 +r +l+v+++s+++s+++k   + ++v+  l  ++ g  ++       ++ts   +   +++ss  yh + p++ ++++++LP d    k+hL + f h+  + k++ +++++++ flpL     +   +                                 + dgeh L  yk e+ p+  +++  +                                                                             ++ k+  ++k++f v+trl S 
  MMETSP0890-20130614|4147_1 362 LRDELFVTIESANFSQDSKVAPRSVEVRARLlHSETGLEVPgL-CRGLAPTSCLRKKNATYRSSTHYHANRPTWEETFRIDLPHDEDLgKYHLHLQFCHCRNEAKRT-PRSVFAFTFLPLSlveaSR--HtvegislenaarnavktlsphrdrarqliamlpIPDGEHRLNCYKpEITPKVKKSSsLEeelyydddeddamlatkrtslgdstptntlgsncslekdrkevvvptyltgsaqargrrvsaagalqalggalrggPPEDKFRLSEKEFFIVHTRLISE 645
                 6899***************************777777777743.334566889999999**************************766699**********666665.8************986533..2458888888889999*************99999999*********97777777776433788888888888888888888888888888888888888888888888888888888888888888888888888877888888888888888888875 PP

>> PF14429.1  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   9.2e-18   2.5e-14       4     119 ..     361     480 ..     359     569 .. 0.81
   2 ?   -2.9   0.0       1.5     4e+03     158     178 ..     617     645 ..     588     647 .. 0.71

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 9.2e-18
   PF14429.1   4 dyrndlyvylkelsfskekk.karnivvtvelrdsdgsskalkliysrssge....eletsvtssvlyhnkkpvFndeikieLPlplt.pkhhLlftfyhvsakeskekeekpfgfaflpLm 119
                 ++r +l+v++++++fs+++k   r ++v+  l  s++   +++ ++ +        + +  ++ss  yh++ p++ ++++i+LP +    k+hL + f h+  + ++++  + f+f+flpL+
  MMETSP0890-20130614|4147_1 361 ELRDELFVTIESANFSQDSKvAPRSVEVRARLLHSETGL-EVPGLCRGLAPTsclrKKNATYRSSTHYHANRPTWEETFRIDLPHDEDlGKYHLHLQFCHCRNEAKRTPR-SVFAFTFLPLS 480
                 6799************888889***************96.666665554444366688889************************876368***********98777765.*********97 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.5
   PF14429.1 158 l........ekaldgskdvlkistrlvSt 178
                          +k+  + k+++ + trl S 
  MMETSP0890-20130614|4147_1 617 GalrggppeDKFRLSEKEFFIVHTRLISE 645
                 044555666889999***********996 PP

>> PF06920.8  Dedicator of cytokinesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   4.2e-17   1.1e-13      15     174 ..    1787    1964 ..    1781    1968 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 4.2e-17
   PF06920.8   15 etPftkdgkaqgeleeqwkrrtilttenafPyikkRievvkkeevelsPievAiediekkteeLaaaieqke.....aniklLqmlLqGsvdaqvneGplkvaev....Flseeea.......dkkqkekv.nkLkkafkeflkileeaLelheklikeeqkelqeeleenf.eelke 174 
                  e P+   g++ ++  e+w  r +  +++++  +++++++v  ++v l+P+e Ai+++++k++eL+  + + +       +++ +m+++G+vda+vn+G ++ a      F ++++        +++ k +v +  +ka+++ l+ +++++++h   +++ +++l +++e+    +l+ 
  MMETSP0890-20130614|4147_1 1787 EWPVPRIGSSSDSALELWVDRRFVVLDEPLAAVTRWLPIVASKTVRLNPMELAIRQLRHKNIELTRILAELDqvppaSALQRHSMAINGVVDAAVNGGLKNWAPLltgqFVETHQDiqkdldeHPDTKATVpADFEKAIRDHLHLVSDCVAKHTLKCPPSMRPLADHIEQVSwPKLRA 1964
                  66777789999999**************************************************98877666676777888889***************99775422227777666877775433333333368999999***********************999999743266655 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.2e-05      0.17      33      70 ..     418     458 ..     394     467 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.2e-05
                 EEEEEE--BSS-SSEEEEEEEEEE.ESCGGGTE..EEEEEE CS
  PF00168.25  33 skkkrTrvikntlnPvWnekftfe.vvaeelae..leleVk 70 
                   ++r++++ + + P+W+e+f ++   +e+l +  l+l+  
  MMETSP0890-20130614|4147_1 418 NATYRSSTHYHANRPTWEETFRIDlPHDEDLGKyhLHLQFC 458
                 3569********************33333333377777765 PP

>> PF02289.11  Cyclohydrolase (MCH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.8e-05      0.24     116     185 ..     541     608 ..     537     613 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8.8e-05
                 SSHHHHHHHT-----S-EEEEEE-SS---HHHHHHHHHH----GGGEEEEEE-SSS----HHHHTTTTT- CS
  PF02289.11 116 kpkelyeeigyeddadvavlvlesdklPdekvvekvakecdvdpenvyllvaPtaslvGsvqisarvvet 185
                 k   l ee+ y+dd d a+l+    +l d   ++ + ++c+++ +   + v Pt  l Gs q  +r v +
  MMETSP0890-20130614|4147_1 541 KSSSLEEELYYDDDEDDAMLATKRTSLGDSTPTNTLGSNCSLEKDRKEV-VVPT-YLTGSAQARGRRVSA 608
                 5567789************************************998776.5688.59******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1986 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.35u 0.39s 00:00:02.74 Elapsed: 00:00:02.06
# Mc/sec: 2299.11
//
Query:       MMETSP0890-20130614|4150_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-14   53.7   0.0      2e-14   53.1   0.0    1.3  1  PF01061.19 ABC-2 type transporter
    0.00017   21.8   0.0    0.00039   20.6   0.0    1.7  1  PF00005.22 ABC transporter
    0.00075   19.7   0.1     0.0021   18.3   0.1    1.8  1  PF13191.1  AAA ATPase domain
     0.0026   17.7   0.1     0.0083   16.1   0.0    1.9  2  PF13401.1  AAA domain
     0.0049   16.3   0.2     0.0085   15.6   0.1    1.3  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0061   16.4   0.0        2.9    7.6   0.0    2.4  2  PF13304.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.4   1.5       0.23   11.1   0.3    3.3  2  PF13245.1  Part of AAA domain
      0.015   15.0   1.9      0.028   14.1   0.1    2.2  2  PF13671.1  AAA domain
      0.022   14.2   0.1      0.056   12.9   0.1    1.6  1  PF13604.1  AAA domain
      0.022   14.2   0.2      0.042   13.3   0.2    1.4  1  PF05729.7  NACHT domain
      0.024   13.8   1.7       0.68    9.1   0.1    2.3  2  PF13481.1  AAA domain
      0.066   12.2   0.1       0.11   11.5   0.1    1.3  1  PF03193.11 Protein of unknown function, DUF258
      0.094   12.3   0.4       0.59    9.7   0.0    2.2  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.19   11.0   0.3       0.37   10.1   0.2    1.4  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   2.1e-17     2e-14       2     208 ..     353     575 ..     352     576 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 2.1e-17
  PF01061.19   2 qikallkreflqryrdpslgllwkliqpllmalvfgtvfgnlg.....nssgglqrpgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldls....f....flflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsm.pkwlq......wiyylnPltyavealrsnl 208
                  +++l +r+++q  rd  ++ +++l+++  +a+++   +   +     + + +++r+ ll fs++ +a+++l+ +  ++ +er+v+ re+  +lys  +++ ak+l+elp  +l+a    +i  + +  +++    +    +   + l+ ta ++s+lgl++++l+ps++ a +l++ l+++  ll+G++ p  +  +  +        +  l+P++++v  l++n+
  MMETSP0890-20130614|4150_1 353 RFFLLYQRSLRQVSRDFKVL-ILRLLSTAGLAIFLADRYAC-PservlDATTVADRIALLTFSTVSMAMLSLVRSLDLVAKERPVVGRETERRLYSGLEYLWAKALAELPGDMLFASAHGIILKWRLQQRYKagfsGeplrASPAIPLATTAAASSTLGLAVGSLTPSADAALALGTPLMVI-HLLTGIINPSGQAaS-NFNtekspvSLQSLSPIRHGVVWLIANE 575
                 6899*************999.99*************99994.44555556666688*********************************************************************87776667744155455545556778888889*************999999999887.688999999888754.2222344446777777777777777776 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     4e-07   0.00039      13     117 ..      93     215 ..      79     216 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4e-07
                 -----EEE-.....--BGGGB-HHHHH...EEEE-------.--BHHHHHH----S--...-HHHHHHHHHH---HHHH--............----------HHHHHHHHHHT.....T--SEEEEESTT CS
                 xxxxxxxxx.x..xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxx RF
  PF00005.22  13 ptegeievd.n..drkdlesdkleklr...igyipqdpllfpeltvrenldmakeekk...tdkrieevlekvgldelldk............srvstLSgGqkqrvalArall.....kkpklllLDEPt 117
                   +g+++ + +   +++l        +    g ++qd   f  +tv e l +a+            +e++e++gl++ +++                 +SgG+++r++ A +l+     + pkl+ +DEP 
  MMETSP0890-20130614|4150_1  93 EAQGKVWQKpSgqRVHGL--------EsgdCGLLAQDSEMFAMMTVYESLYFAYAMRGrykPANATQEAIEAFGLEGVANSrvgdsrsaatsgAGSAAISGGERRRLCVAIELAlcgseSPPKLIAADEPI 215
                 337777766433333333........23349*******************88876654887555667888888888855555889******9999999**********99988733333356699999996 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.2e-06    0.0021      20     103 ..      61     159 ..      51     230 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.2e-06
   PF13191.1  20 segsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.................lpysaiiqalrellrqlltelaaelggwreallaalga 103
                 s+g + ll+ +GpsG GK++Llr l     + r+++a gk++q                     +++ a +  +++l+ + + + + + +++++++ +a g 
  MMETSP0890-20130614|4150_1  61 SAGAGrLLVCLGPSGAGKTTLLRGLV---SATRGLEAQGKVWQKPSGqrvhglesgdcgllaqdSEMFAMMTVYESLYFAYAMRGRYKPANATQEAIEAFGL 159
                 344446999**************955...5667888888887766665557777766666665555555555566666666666666666666666666665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.5e-06    0.0083       5      27 ..      66      88 ..      62     173 .. 0.88
   2 ?   -3.2   0.0       7.5   7.3e+03      26      86 ..     228     237 ..     188     260 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.5e-06
   PF13401.1  5 gilvvtGesGvGKTtllrrlarq 27
                ++lv+ G+sG+GKTtllr l++ 
  MMETSP0890-20130614|4150_1 66 RLLVCLGPSGAGKTTLLRGLVSA 88
                789***************99876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7.5
   PF13401.1  26 rqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrr 86 
                 r l                                                   +++++++
  MMETSP0890-20130614|4150_1 228 RHL---------------------------------------------------RNYAKKH 237
                 222...................................................2222222 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   8.7e-06    0.0085       5      39 ..      55      89 ..      51     102 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.7e-06
  PF02367.12  5 gkrlaellkagdvvlLsGdlGaGKTtlvkglakgl 39
                 ++ +    ag++++  G+ GaGKTtl++gl+++ 
  MMETSP0890-20130614|4150_1 55 VQSCGGSAGAGRLLVCLGPSGAGKTTLLRGLVSAT 89
                56667777899999*****************9865 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0029       2.9       4      19 ..      70      85 ..      67      98 .. 0.86
   2 !    6.2   0.0    0.0083       8.1     237     299 ..     183     248 ..     177     249 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0029
   PF13304.1  4 iiGpNgsGKSnlLkal 19
                  Gp g+GK++lL+ l
  MMETSP0890-20130614|4150_1 70 CLGPSGAGKTTLLRGL 85
                57************98 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0083
   PF13304.1 237 lSdGtkrll..alltallsalekgsvlliDEpEngLHPkllrrliellkelsn.ggsQlifTTHSp 299
                  S G++r l  a+ +al  +  ++++++ DEp +gL+  + +++i+ l++ ++ +++  ++T H p
  MMETSP0890-20130614|4150_1 183 ISGGERRRLcvAIELALCGSESPPKLIAADEPISGLDTVAAQTVIRHLRNYAKkHNIAAVVTLHAP 248
                 599999999888888888888888************************888888999999998876 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00024      0.23      10      35 ..      65      89 ..      60     108 .. 0.73
   2 ?    1.2   0.0      0.29   2.8e+02      41      62 ..     265     286 ..     220     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00024
   PF13245.1 10 npllvvtGgPGtGKTttlaaiiaall 35
                 +llv  G+ G+GKT tl+++ + + 
  MMETSP0890-20130614|4150_1 65 GRLLVCLGPSGAGKT-TLLRGLVSAT 89
                5677779********.8777777665 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.29
   PF13245.1  41 pgrsvllvaptgraakrlserl 62 
                 pg ++ ++++ ++aa+++++ +
  MMETSP0890-20130614|4150_1 265 PGGRIAYLGSARKAAAYFRKHF 286
                 3789999999999999998776 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.9e-05     0.028       1      23 [.      67      89 ..      67     101 .. 0.88
   2 ?   -1.0   0.1       1.3   1.3e+03      24      59 ..     320     355 ..     308     370 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-05
   PF13671.1  1 lvllvGlpGsGKstlaerllkkl 23
                l+++ G++G+GK+tl+++l+ ++
  MMETSP0890-20130614|4150_1 67 LLVCLGPSGAGKTTLLRGLVSAT 89
                68999*************98765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.3
   PF13671.1  24 gyvrlsqdtlrkrlfgtdqqsktdytrvlkrlyqil 59 
                   +++ +   +++l +++qq+k++ t v++rl +++
  MMETSP0890-20130614|4150_1 320 RHYTIPTAFTSEQLTKNKQQQKSFLTIVKTRLQRFF 355
                 445555555667888888888888888777776655 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.7e-05     0.056      17      50 ..      65     108 ..      52     115 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.7e-05
   PF13604.1  17 gdrvavvqGpAGtGKttvlkalrealea...........agkrvv 50 
                 g+ + v  Gp G+GKtt+l+ l+ a +            +g+rv+
  MMETSP0890-20130614|4150_1  65 GR-LLVCLGPSGAGKTTLLRGLVSATRGleaqgkvwqkpSGQRVH 108
                 44.55555*************999988765555555555455555 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   4.3e-05     0.042       1      24 [.      66      89 ..      66      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.3e-05
   PF05729.7  1 rtvilqGeaGsGKTtLlqklasaw 24
                r+++  G++G GKTtLl++l+sa 
  MMETSP0890-20130614|4150_1 66 RLLVCLGPSGAGKTTLLRGLVSAT 89
                678899**************9975 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00069      0.68      29      58 ..      61      90 ..      42     111 .. 0.74
   2 ?    3.6   0.1     0.034        33     164     190 ..     222     248 ..     209     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00069
   PF13481.1 29 llprgsltllaGapgtGKStlalqlaaava 58
                   +g l++  G++g+GK+tl+  l+ a  
  MMETSP0890-20130614|4150_1 61 SAGAGRLLVCLGPSGAGKTTLLRGLVSATR 90
                55679999*************988887665 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.034
   PF13481.1 164 dvgaviaalerlakrtgaavllvhHtg 190
                 +++ vi+ l++ ak++++a +++ H  
  MMETSP0890-20130614|4150_1 222 AAQTVIRHLRNYAKKHNIAAVVTLHAP 248
                 35889**************99999975 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.11      35      59 ..      65      89 ..      43     114 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
                TSBEEEE-------HHHHHHH---- CS
  PF03193.11 35 dktsvlvGqSGvGKSsLinallpel 59
                +++ v +G+SG+GK++L+  l++ +
  MMETSP0890-20130614|4150_1 65 GRLLVCLGPSGAGKTTLLRGLVSAT 89
                578899************9998865 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0006      0.59       3      23 ..      68      88 ..      66     101 .. 0.85
   2 ?   -0.0   0.0       0.6   5.8e+02      15      37 ..     225     247 ..     224     250 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0006
                EEEE-------HHHHHHHHHH CS
   PF03205.9  3 vavvGpkdsGKTtlieklvnk 23
                +++ Gp++ GKTtl++ lv  
  MMETSP0890-20130614|4150_1 68 LVCLGPSGAGKTTLLRGLVSA 88
                6788*************9875 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHH-------EEE- CS
   PF03205.9  15 tlieklvnklkergyrvavvkhl 37 
                 t+i++l n++k+ ++  +v +h 
  MMETSP0890-20130614|4150_1 225 TVIRHLRNYAKKHNIAAVVTLHA 247
                 99***********9999998885 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00037      0.37       3      24 ..      68      88 ..      66      97 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00037
                EEEE-------HHHHHHHHCHS CS
  PF02492.14  3 tvltGflGsGKTtLlekllekn 24
                +v  G+ G+GKTtLl+ l++  
  MMETSP0890-20130614|4150_1 68 LVCLGPSGAGKTTLLRGLVS-A 88
                567899**********9994.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.07u 0.44s 00:00:01.51 Elapsed: 00:00:01.14
# Mc/sec: 1256.52
//
Query:       MMETSP0890-20130614|4155_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-26   90.4   0.0    1.2e-25   89.8   0.0    1.3  1  PF02469.17 Fasciclin domain
    0.00045   19.9  11.9       0.17   11.5   4.0    3.3  2  PF11912.3  Protein of unknown function (DUF3430)


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   1.8e-29   1.2e-25       2     125 .]     241     365 ..     240     365 .. 0.93

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 1.8e-29
                 HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHHHHEEBCCC-EEEEEEE.---EEEEEE.EEEEEEEEE------EEEESS-S-- CS
  PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpetvsssdlkkaeqlatlegaklrvnik.gngtvtvng.karvvrsdieatngvihvidkvLlp 125
                 +++t+v+l+e agl++ L k +g+lT+FaPtn+Af+++p+   +++  d   l++iL yH +p+ v+ sd++++  l+ ++g++l+v++  g+ ++ + + +a vv  d +a+ngv+h +d+vLlp
  MMETSP0890-20130614|4155_1 241 NLTTLVALVELAGLTDAL-KADGNLTLFAPTNAAFDAFPETAATAVVGDTVVLANILSYHALPSVVYGSDVSDGDVLEAINGDSLEVSFGaGGVSLIFPTgSALVVLGDLQASNGVVHYVDTVLLP 365
                 79****************.888*****************999999999******************************************633344444469**********************98 PP

>> PF11912.3  Protein of unknown function (DUF3430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   4.0   2.5e-05      0.17      15     167 ..      15     174 ..       4     182 .. 0.64
   2 !   11.0   0.2   3.6e-05      0.25      19      77 ..     183     235 ..     176     243 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.5e-05
   PF11912.3  15 lnfl.......insqyinfipyq.sekCsgegsssgigysieide.Citnd..nqnnyvfsvftdssdgeiiktnyyedqnCegkpistftfe.igsCvstpefvnnasnsssy..ysykvsttd.epeiptnsv....vtsfyngseCsndsnflyieyftnntcinesdn 167
                 l++l       in++ +  i++q s++C++++ +  +     + + C   +  ++++   ++ +++s+  + +++++ d  C+   ++ +t e   +C        n +n++ +   + +++ ++ +p  ++ s      t+ y+ s+Cs+d +f  + y+  +tc++e+ +
  MMETSP0890-20130614|4155_1  15 LACLgegaipvINGSWAATIKFQsSSECEQSTAQEAFV---RLPSgCNPTStsFEETGAAWYAECDSS-ATWQVSWFSDLTCSVFDYA-ETLEtPRECEL------NDKNQKESfyCMDQTIPVElDPTSEEGSEfwriQTALYSASDCSDD-SFFMYRYYHPGTCVAENGQ 174
                 3333566777789999999****9*****666655555...444447666656677788888888765.5678888888***644444.44444699999......5555555422122222222333333333245556777777******.***************8444 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.6e-05
   PF11912.3  19 insqyinfipyqsekCsgegsssgigysieide.Citndnqnnyvfsvftdssdgeiikt 77 
                 + +++++f  y++++C+  g++++ g +i   + C++++   ++ f+  t +sd++i+ +
  MMETSP0890-20130614|4155_1 183 SGDTTVSFASYDNDDCD--GDPTSQG-EI-GPSvCFELS---SELFMKVTSVSDQTIFGM 235
                 56677999999999999..4444555.33.233599888...777777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.90
# Mc/sec: 1089.01
//
Query:       MMETSP0890-20130614|4154_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-06   25.6   1.8    9.7e-06   25.1   1.2    1.3  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.026   14.2   3.6      0.026   14.2   2.5    1.7  2  PF13085.1  2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   1.2   1.4e-09   9.7e-06       2      51 ..     110     155 ..     109     167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.4e-09
                 EESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHC CS
  PF00111.22   2 tidgkevevevadgettlldaaeenggidipysCggggCgtClvevnege 51 
                 ti+gk  ++ + +g++ + d+ +++   ++p+ C++g CgtC + vn  +
  MMETSP0890-20130614|4154_1 110 TICGK--KTKAIPGQR-MKDVIRSA-RAPVPFNCENGECGTCECLVNGRK 155
                 67777..445568999.******99.9*****************999554 PP

>> PF13085.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.35   2.4e+03      55      68 ..     110     123 ..     108     134 .. 0.81
   2 ?   14.2   2.5   3.8e-06     0.026      51      77 ..     138     164 ..     125     169 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.35
   PF13085.1  55 gvCGscavninGkp 68 
                 ++CG+ + +i G+ 
  MMETSP0890-20130614|4154_1 110 TICGKKTKAIPGQR 123
                 68999998888865 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.8e-06
   PF13085.1  51 sCregvCGscavninGkptlaCsatik 77 
                 +C++g CG+c   +nG++  +C+ ++ 
  MMETSP0890-20130614|4154_1 138 NCENGECGTCECLVNGRKIRVCKYNVP 164
                 7*********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 641.49
//
Query:       MMETSP0890-20130614|4159_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-26   93.1   0.0    2.6e-26   92.0   0.0    1.5  1  PF05903.9  PPPDE putative peptidase domain
  ------ inclusion threshold ------
      0.012   15.3   5.1      0.012   15.3   3.5    2.2  2  PF00397.21 WW domain
      0.067   11.6   0.0       0.11   10.9   0.0    1.2  1  PF05833.6  Fibronectin-binding protein A N-terminus (FbpA)


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   5.8e-30   2.6e-26       2     135 ..     151     279 ..     150     286 .. 0.93

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 5.8e-30
   PF05903.9   2 kvklivydlsliktglarrv.sllllGkklegiyhtgvevygkeyalggkekeesgitelkpkttsegakfresielgeTevteeevreileelsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPkwinrlar 135
                 +v l+vyd+  +  g+ +++ ++l lG    g +htg+evyg+e+++g+ + +e+gi+  +pkt +e +++resi lg T+ +e +v e l +l+  + g++Y+L+ kNCn F+  ++  L  +++P+w+++la+
  MMETSP0890-20130614|4159_1 151 QVWLHVYDVKFRGAGMLNSIfRPLTLG----GAFHTGIEVYGREWSFGA-TAHECGIFAYPPKT-CEPHRYRESISLGFTSKSELAVFESLLRLAPLWWGTSYDLLRKNCNSFCIVFAGALGVQSLPEWVHSLAD 279
                 688*******99888766554999999....9***************98.6666**********.9999***************************************************************987 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   3.5   2.6e-06     0.012       1      31 []      28      58 ..      28      58 .. 0.92
   2 ?   -3.3   0.0       1.7   7.9e+03       2       8 ..     270     276 ..     269     280 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.6e-06
                ---SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21  1 lppgWeersddd.dGrvYYyNheTgetqWekP 31
                lp+gW +++d + + + YY N++Tg+ +W +P
  MMETSP0890-20130614|4159_1 28 LPEGWLRWWD-EtSSQFYYQNTKTGQVSWSDP 58
                799******7.559999************999 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.7
                 --SEEE. CS
  PF00397.21   2 ppgWeer 8  
                 +p+W++ 
  MMETSP0890-20130614|4159_1 270 LPEWVHS 276
                 688*764 PP

>> PF05833.6  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05      0.11     216     307 ..      13      90 ..       3      96 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
   PF05833.6 216 ketpveelseedlerlyealkelleeleeekfkpqlvlkeekpedfdvvplkylselekesfeslsealdeyYakkaeedrleqkredlekr 307
                 ++++ +++s++ l++l e + ++ +e +      q +++++k  +++             +  +l + ld+yY++k  + r+ q+++++ ++
  MMETSP0890-20130614|4159_1  13 PKQRPAKVSADGLRKLPEGWLRWWDETS-----SQFYYQNTKTGQVSWS---------DPTRWKLGQWLDHYYGNKSGKSRIGQRSRRILQK 90 
                 5667788999***************998.....4777887544444442.........278899*********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.86
# Mc/sec: 1535.34
//
Query:       MMETSP0890-20130614|4167_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 766.83
//
Query:       MMETSP0890-20130614|4163_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-30  103.9   0.0    2.6e-29  102.2   0.0    1.8  1  PF00621.15 RhoGEF domain


Domain annotation for each model (and alignments):
>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   1.9e-33   2.6e-29       2     179 ..      40     216 ..      39     217 .. 0.88

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 1.9e-33
                 HHHHHHHHHHHHHHHHHHHHHTHHHHHHC.TSS-HHHHHHHSTTHHHHHHHHHHHHHHHHH.............HHH--..------HHHHHHHH-HHHHHHHHHCTHHHHHHHHHHHHHH-HHHHHHHH..HHGGG.TT--HHHHCTHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00621.15   2 ieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLee.............rlkek..kdaqkigdvflkleeflkvYseYisnydkalkllkelskknskfkkflkeceespecskldLeslLikPvqRlprYplLLkellkqtpedhpdyedlekaleaikevasqiN 179
                 + El+e+Er+Yv+dL+v+ + + ++++  k++l++e i ++F+n++++ ++h ++l++Le              +++++  + ++ ++  f+++++flk+  +Y++ y +al++l++    ++     lk + +    ++ldL s+L+kP qRl++Ypl++++l+  +++    +   ++ale++++va  +N
  MMETSP0890-20130614|4163_1  40 LDELVESERKYVKDLTVICDGFQKEIET-KKLLPAEAIGNVFGNCSQLRQVHMTLLKRLERaenalkaarvsgkKIEASalQAEKAMSTAFIEMAPFLKASASYCAGYRRALATLAK----HP-----LK-IHA----HGLDLVSYLVKPLQRLTKYPLFFRDLAALSEPPG-SRCPASDALESVERVAADVN 216
                 67**************************.9*******************************88877777665543333367788889************************999943....34.....44.333....69****************************8666.67899************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       674  (0.0492978); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.61s 00:00:01.18 Elapsed: 00:00:01.22
# Mc/sec: 836.76
//
Query:       MMETSP0890-20130614|4174_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-15   54.5   1.4    1.1e-14   53.4   0.1    1.8  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.015   13.3   0.7      0.031   12.3   0.5    1.5  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.099   6.8e+02      34      39 .]       1       6 [.       1       6 [. 0.88
   2 !   53.4   0.1   1.6e-18   1.1e-14       2      39 .]      11      48 ..      10      48 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.099
                EEEEEE CS
  PF00400.27 34 tirlWd 39
                t ++Wd
  MMETSP0890-20130614|4174_1  1 TAKIWD 6 
                78***9 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 1.6e-18
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++ tlrgHt++V+++afspdg++++++S D+t r+W+
  MMETSP0890-20130614|4174_1 11 RLLLTLRGHTGWVSACAFSPDGTRVITASNDRTARVWN 48
                5788*********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   4.5e-06     0.031     218     253 ..      23      54 ..       5      55 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.5e-06
   PF11715.3 218 aasldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                 +++ ++s+    + t v+t s D++ RvWn e+g++
  MMETSP0890-20130614|4174_1  23 VSACAFSP----DGTRVITASNDRTARVWNAENGTL 54 
                 56666666....667788***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 209.21
//
Query:       MMETSP0890-20130614|4184_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.0   0.3      0.034   12.9   0.2    1.0  1  PF05655.6 Pseudomonas avirulence D protein (AvrD)


Domain annotation for each model (and alignments):
>> PF05655.6  Pseudomonas avirulence D protein (AvrD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.5e-06     0.034     198     232 ..      15      49 ..       6      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-06
   PF05655.6 198 hdsePnllpgGieaayfnivspvdslvsvaqlaqa 232
                 +   Pn + gG +++  +i++ v+ +  +aq+ qa
  MMETSP0890-20130614|4184_1  15 QSLAPNRQTGGANSNLVPIMNNVQHVPVQAQMQQA 49 
                 3445*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:01.26
# Mc/sec: 112.21
//
Query:       MMETSP0890-20130614|4176_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-59  201.7   0.0    1.1e-53  182.1   0.0    3.1  2  PF03630.9 Fumble


Domain annotation for each model (and alignments):
>> PF03630.9  Fumble
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.2e-07    0.0099       2      65 ..     318     389 ..     317     443 .. 0.82
   2 !  182.1   0.0   8.2e-58   1.1e-53      71     329 ..     469     742 ..     458     746 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.2e-07
                 B---B----EEEEEEE--SS--SHHHHHHHHHHHH........---------EEEEEEEGGGHHHHHH---T CS
   PF03630.9   2 klalDiggtlvKlvyfsakdesaeeeskekeslke........llskekegrlhfikfetkkidkvleflke 65 
                 kl+lD gg+l+Klv  s+  + +++++   + ++         ll +++   lhf+k  t+++++vl+ l++
  MMETSP0890-20130614|4176_1 318 KLGLDLGGSLTKLVIASPLVNGQNHSQAACRAARAddalklkvLLADGQATVLHFAKASTDELEDVLKALAD 389
                 79************9999887777766666666668999999899999*******************98765 PP

  == domain 2    score: 182.1 bits;  conditional E-value: 8.2e-58
                 T--GGGSSEEEEB----HHHHHHHHH----EEEE--HHHHHH---HHHHH.----SEEEEES....TT-TT............EEEE--.....-SS--SEEEEEE----EEEEEEETTEEEEEE------------HHHH----SHHHHHHHHH---GGGTSEEHHHH----.-TT-------EEE----TTSHHHH.HH--HHHHHHHHHHHHHHH---HHHHHHHHHT-.--EEEE-ETTSSSSHHHHHHHHHHHHHT-----EEEETT--------- CS
   PF03630.9  71 knlkkektvlvaTgggafkfedllkeklnvklekedeleclikGlnfllk.eikaEvftyek....deegek.l.........ekkqln.....skdlypyllvNigsGvSilkvegedqfkrvgGsslGGGtflGLlsLltgaksfdellelaqkGdnsevDmlvrdiYggd.yeklglkgsliAssfgkvleeekeleefkkediaksllvaisnnigqiayllaekekv.kriyfgGsfirnnaltmktlsyainfwskgelkalflrhegylgalGa 329
                  + ++e   +va ggga k+  +++  l+++l+ + e+++++ Gl  l +  +++Ev+  ++    d++++  +         +k++++      k l p llvN+gsGvS l v+ e  + r+gG+ +GG tflGL + lt+a++fde++ela+ G+  +vD lv+diYg++    lgl++sl+A+sfgk ++++++   +++ d++++ll ++++    +a+ +a +    +r++f G f+ +n+l + t++ ++    +   +a flrh  +lgalGa
  MMETSP0890-20130614|4176_1 469 DSGEHEGRRIVAAGGGAHKLRGKFRLALGIELTPFREMQSVVDGLLLLHElGVEDEVYKVQNvsvgDQSTNGgFfsndqeypnQKVPAEvfaawPKPLLPLLLVNVGSGVSCLLVTREG-YARIGGTAIGGATFLGLARALTPARTFDEAIELAAAGNAAKVDTLVGDIYGDAgCVDLGLPPSLTAASFGKLARSDTN---YSPADVCRALLEMVAQSCCVLARAHASQLGCrQRVFFAGGFVDGNPLARATIANSL---RSLGGRAHFLRHSDFLGALGA 742
                 456778899*************************************999877889999877622222222212123221112222222211112456789***************9765.8****************************************************999*****************99977...**************************99887489******************9444...445569**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:01.08
# Mc/sec: 1739.58
//
Query:       MMETSP0890-20130614|4188_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   16.2   0.0      0.015   15.0   0.0    1.6  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14   1.9e+03      23      29 ..      16      22 ..       1      38 [. 0.55
   2 !   15.0   0.0   1.1e-06     0.015       2      28 ..      45      71 .]      44      71 .] 0.93

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.14
                STEEEEE CS
  PF00400.27 23 gpllasg 29
                g+ l +g
  MMETSP0890-20130614|4188_1 16 GQQLTTG 22
                4444443 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.1e-06
                EEEEEEESSSSSEEEEEEESSSTEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllas 28
                + +++l+gHt+ + + +fs dg ++++
  MMETSP0890-20130614|4188_1 45 KSLHSLEGHTGRILSGKFSKDGGRVVT 71
                7899*****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 309.35
//
Query:       MMETSP0890-20130614|4187_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-07   30.8   0.0    2.7e-07   30.1   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.3e-06   27.7   0.0    2.2e-06   27.0   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    4.9e-06   26.3   0.0    8.3e-06   25.6   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     6e-11   2.7e-07       4      56 .]      89     143 ..      88     143 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 6e-11
   PF13893.1   4 lfskfGkverikifrkkggqAfvefdtveaArkakeylngvk...lygktLkveys 56 
                 lf+ fG++++i+i+++k  qA+v+  +ve+A +a+e l g+    ++g++++ +ys
  MMETSP0890-20130614|4187_1  89 LFEDFGPCVKICILPNK-PQALVQLPSVECATRAIEVLGGTRraqIRGHKIYFNYS 143
                 899************99.********************6666666*********98 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.8e-10   2.2e-06       4      62 ..      75     128 ..      72     139 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.8e-10
                 ESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTE CS
  PF00076.17   4 gnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngk 62 
                 +n p+dvt  +++ lF++fGp ++i + ++     k+ a V+  s e a++A+e l g+
  MMETSP0890-20130614|4187_1  75 RNTPKDVTRYDIEVLFEDFGPCVKICILPN-----KPQALVQLPSVECATRAIEVLGGT 128
                 788*******************99999995.....*******************99885 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.8e-09   8.3e-06       1      69 []      72     139 ..      72     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.8e-09
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln....lvlkgrtir 69 
                 l++r+ p++vt  d+  +f+++g+  ++ i +n     + +A+v+++s e A +a++ l+     +++g++i+
  MMETSP0890-20130614|4187_1  72 LHLRNTPKDVTRYDIEVLFEDFGPCVKICILPN-----KPQALVQLPSVECATRAIEVLGgtrrAQIRGHKIY 139
                 689********************9888888888.....579****************9843336778888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1574  (0.115126); expected 273.4 (0.02)
Passed bias filter:                      622  (0.0454944); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.88
# Mc/sec: 699.85
//
Query:       MMETSP0890-20130614|4192_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-15   54.8   1.1    9.3e-09   34.7   0.2    2.4  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.072   12.3   0.0       0.97    8.7   0.0    2.2  2  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   1.4e-12   9.3e-09       2      39 .]       5      42 ..       4      42 .. 0.95
   2 !   18.9   0.0   1.3e-07   0.00087       8      29 ..      59      80 ..      47      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.4e-12
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                + ++++rg t++++cv fspdg+++a+++ D+  r+W+
  MMETSP0890-20130614|4192_1  5 TELRIFRGTTASIECVVFSPDGHCFATSGVDRINRVWH 42
                6799*********************************6 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.3e-07
                ESSSSSEEEEEEESSSTEEEEE CS
  PF00400.27  8 rgHtspVtcvafspdgpllasg 29
                + Ht++V+++a+spdg+++a+g
  MMETSP0890-20130614|4192_1 59 EDHTFGVRSLAYSPDGTVIACG 80
                68******************98 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00014      0.97       5      13 ..      19      27 ..      18      29 .. 0.85
   2 ?    1.2   0.0     0.031   2.1e+02       8      12 ..      70      74 ..      69      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00014
                TT------- CS
   PF10584.4  5 lTtFSPdGR 13
                + +FSPdG+
  MMETSP0890-20130614|4192_1 19 CVVFSPDGH 27
                569*****8 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.031
                ----- CS
   PF10584.4  8 FSPdG 12
                +SPdG
  MMETSP0890-20130614|4192_1 70 YSPDG 74
                8***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.80
# Mc/sec: 392.40
//
Query:       MMETSP0890-20130614|4191_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.051   13.5   0.0    1.2  1  PF12630.2  Poxvirus poly(A) polymerase N-terminal domain
      0.063   12.6   0.1      0.075   12.4   0.0    1.1  1  PF01956.11 Integral membrane protein DUF106
      0.092   12.5   0.0       0.13   12.1   0.0    1.3  1  PF13858.1  Protein of unknown function (DUF4199)
       0.42   10.4   2.6       0.65    9.8   1.8    1.4  1  PF12650.2  Domain of unknown function (DUF3784)


Domain annotation for each model (and alignments):
>> PF12630.2  Poxvirus poly(A) polymerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.051      59     102 ..      23      67 ..      19      72 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-05
   PF12630.2  59 esseseikrrileyFskQekte.kiGklltiielQsvlvttytki 102
                 e +++e+k+ ++e F+kQ + + ++Gk++ +i +  ++++  + +
  MMETSP0890-20130614|4191_1  23 EEEKEELKKELDEDFQKQMEDQrNMGKVMLLIGFAIIVMAWLNGV 67 
                 46789*************877659**********99988777765 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.2e-05     0.075      62     128 ..      24      91 ..      11     105 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
  PF01956.11  62 ngdklklkklekrkeelkedqkemmmeqmkpnivimipqivifgwlnsffs.....gfvv..aklp.fpltgrfk 128
                 + +++ +k+l++  ++ +ed      ++ k ++ i++  i++++wln ++s        +    lp fpl + ++
  MMETSP0890-20130614|4191_1  24 EEKEELKKELDEDFQKQMED----QRNMGKVMLLIGF-AIIVMAWLNGVVSwhfhyV--ArlIGLPrFPLPQDVS 91 
                 33333333333333333333....4444444444443.3455667776666544222..2235677777776665 PP

>> PF13858.1  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.7e-05      0.13      88     145 ..       4      62 ..       1      75 [. 0.61

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.7e-05
   PF13858.1  88 ylnfidpdffenlieqaeeemeeagageaeieekieqelemkeklsp..isllfqgiign 145
                  ln++dp+ +e++ e  ++e+e+ + +++ +e+ + q++ +++ + +  + + f +i+++
  MMETSP0890-20130614|4191_1   4 ALNVLDPTTLEQMGERPLTEEEKEELKKELDEDFQKQMEDQRN-MGKvmLLIGFAIIVMA 62 
                 689************9977655555555555544444443333.3442334444444444 PP

>> PF12650.2  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.8   0.00019      0.65      43      68 ..      44      69 ..      21      81 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00019
   PF12650.2 43 skdmgkfmlliaiilligallelfls 68
                 ++mgk+mlli+++++++a l+  +s
  MMETSP0890-20130614|4191_1 44 QRNMGKVMLLIGFAIIVMAWLNGVVS 69
                589***************99776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1228  (0.0898186); expected 273.4 (0.02)
Passed bias filter:                      996  (0.0728496); expected 273.4 (0.02)
Passed Vit filter:                       120  (0.00877706); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.88
# Mc/sec: 310.44
//
Query:       MMETSP0890-20130614|4195_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-06   26.1   0.0    2.8e-05   24.3   0.0    2.0  2  PF00691.15 OmpA family
  ------ inclusion threshold ------
      0.046   13.4   0.0      0.098   12.4   0.0    1.5  1  PF12812.2  PDZ-like domain
      0.098   12.7   0.0       0.26   11.3   0.0    1.7  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF00691.15  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.9   4.1e+03      32      47 ..     154     169 ..     136     223 .. 0.63
   2 !   24.3   0.0   6.1e-09   2.8e-05       5      92 ..     455     558 ..     451     563 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.9
  PF00691.15  32 qieieGhtdntgssey 47 
                 q ei +ht++++++e+
  MMETSP0890-20130614|4195_1 154 QAEIDSHTAASDVTER 169
                 4666666665544443 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 6.1e-09
  PF00691.15   5 gsaeltakakktLeelaevlk.yqeekdqieieGh.....................tdntgssey...nwdLSlrRAaaVvqyLqnegidpsrlavegfgesqplanedtdea 92 
                 + a   + ++  L ++ +v++ +++    ++ eGh                     t       +   +  LS++RA+aV+++ ++ gi p+r+ ++gf+ ++ l+++ +++ 
  MMETSP0890-20130614|4195_1 455 NRAIPLQRSQPLLTQILRVMQsHPGLA--VRFEGHvnsrcllscdgkmpcpstmckT-------ApggAFGLSTARADAVRAFVIACGIEPDRVYAQGFAGTRRLTDNLDEQH 558
                 555545788888888888888666666..******9988888877777766533222.......1334************************************999998885 PP

>> PF12812.2  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.2e-05     0.098      32      76 ..      11      54 ..       6      56 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
   PF12812.2 32 gvyvseasgsfslaskekkgviitsinnkptpnLdefievlkklp 76
                +v + +a+g  +  + ++ g++++ +n+kp +n d ++ ++ +lp
  MMETSP0890-20130614|4195_1 11 VVLTVKAGGAAKSLG-VRPGMVVSRVNGKPMSNYDSVMAIVPNLP 54
                455556666666656.9***********************99998 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.7e-05      0.26      24      60 ..       7      43 ..       2      53 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.7e-05
                SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTS CS
  PF00595.19 24 dkgifvsevvpggaaeagglkeGDkIlsvNgvdvenv 60
                d +++v  v +ggaa+  g+++G ++ +vNg++++n 
  MMETSP0890-20130614|4195_1  7 DGSAVVLTVKAGGAAKSLGVRPGMVVSRVNGKPMSNY 43
                35899*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:01.03
# Mc/sec: 1330.79
//
Query:       MMETSP0890-20130614|4204_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0057   16.4   0.1     0.0072   16.1   0.1    1.1  1  PF02969.12 TATA box binding protein associated factor (TAF)


Domain annotation for each model (and alignments):
>> PF02969.12  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.3e-07    0.0072      32      57 ..       2      27 ..       1      31 [. 0.92

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.3e-07
                HHHHHHHHHHHHHHHHHHHTT-SSB- CS
  PF02969.12 32 dveyrlkeivqealkfmrhskRqkLt 57
                +v+yr+  i+q a + +  +kR+++ 
  MMETSP0890-20130614|4204_1  2 NVKYRVTGITQSAQQATTLAKRKRMG 27
                79*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.63
# Mc/sec: 201.60
//
Query:       MMETSP0890-20130614|4202_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:01.08
# Mc/sec: 656.78
//
Query:       MMETSP0890-20130614|4201_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   40.0   0.0    3.5e-10   39.0   0.0    1.4  1  PF05686.7 Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.042   13.4   1.1       0.33   10.5   0.2    2.8  3  PF14214.1 Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   5.1e-14   3.5e-10     139     319 ..     602     816 ..     562     830 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 5.1e-14
   PF05686.7 139 wslllkelkegnkkvkweerepyaywkGnpsvae.tReeLlkcnrskkelvdarltkq....................................dekkeskegvkessledqckhkYkiyieGvaa.svs..ekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteY 319
                 w++l  e  + ++  +we r+++a ++G        R +Ll +n + ++  d+ +tk                                     +    ++    +++ +++ ++kY i + G+a  s+s  ++y+ + +s++l+ + +  ++++++L p  h++ +++    ++++e +d ++a++   +++   +++F+r+ L+ + +   ++++++  
  MMETSP0890-20130614|4201_1 602 WDNLQSEHMALSESRPWETRKSVALFRGACGPGAlPRFKLLSLNDT-QRRFDVGFTKVdgypsmvdcvrslsaksnnpdsprvpksadvdenkvQ-YVLKNRVLPHVPQSNFSNFKYLIHMPGSATgSYSrnLQYLWSHGSIILVWHHYAIEHYYHKLIPGTHFLIVDE----KNIHEIIDKLEANPIIQKRLRDGARDFARTVLSGEGLITRWHSVFSIL 816
                 777776666889999*************98877767********98.67899*****99****************************99766532.2245566679999**************98545552279*********************************99....889999999**************************9999998887655 PP

>> PF14214.1  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   4.9e-05      0.33     160     184 .]       2      26 ..       1      26 [. 0.94
   2 ?   -1.1   0.0      0.18   1.2e+03     105     139 ..     373     409 ..     372     425 .. 0.84
   3 ?   -1.1   0.0      0.17   1.2e+03      76      98 ..     590     612 ..     585     615 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.9e-05
   PF14214.1 160 gkveayvyrvefqkRGlpHvHiLlw 184
                 g +e ++yr e q+RG++HvH+ +w
  MMETSP0890-20130614|4201_1   2 GTIERTWYRHEDQARGSLHVHMAIW 26 
                 789999****************998 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.18
   PF14214.1 105 PdlFiTftc.npkwpeitrelk.epgqeaedrPdiva 139
                 P++ i  t+   + pe+++++  ++++++  +P i+ 
  MMETSP0890-20130614|4201_1 373 PQIQIHSTPfSLNLPELKSRIDvKYYTNSHQNPNICR 409
                 55666667778899*******989*********9985 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.17
   PF14214.1  76 vlpasftGtrrymsqeyqdamAi 98 
                 ++p+ f  t++++ + +++ mA+
  MMETSP0890-20130614|4201_1 590 LMPNPFFATPQWWDNLQSEHMAL 612
                 68999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.84
# Mc/sec: 2481.94
//
Query:       MMETSP0890-20130614|4221_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   73.7   0.2    7.3e-20   71.2   0.0    2.4  2  PF13426.1  PAS domain
    4.9e-10   38.9   8.9    4.9e-10   38.9   6.2    2.5  2  PF07716.10 Basic region leucine zipper
    5.1e-08   32.6   6.8    5.1e-08   32.6   4.7    2.9  2  PF00170.16 bZIP transcription factor
    5.2e-06   26.1   0.7    1.7e-05   24.4   0.0    2.1  2  PF00989.19 PAS fold
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.045   13.7   0.0    1.6  1  PF08447.6  PAS fold


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.86   2.4e+03      30      59 ..     162     191 ..     157     241 .. 0.61
   2 !   71.2   0.0   2.7e-23   7.3e-20       3      98 ..     323     421 ..     321     423 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.86
   PF13426.1  30 evlgksirdlfpededeeavalleraleag 59 
                 e+ + + +++f++++++++ a+ ++++++ 
  MMETSP0890-20130614|4221_1 162 EFTHSPSDQVFAPSHHNAKEASTKKECSTS 191
                 555566666676666666665555555522 PP

  == domain 2    score: 71.2 bits;  conditional E-value: 2.7e-23
   PF13426.1   3 gilildpd...gtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleaggevevelelrrkdgeefpvevtvtpvrdedgevvgiivi 98 
                 +++i+dp+   ++i++a+  +l+ +Gyt ++v+g+++r+l+++ +d+ +v++l++++++g+++ v++ +++kdg++f++++ v+++rd ++++v++++i
  MMETSP0890-20130614|4221_1 323 SFCITDPSledNPIVYASSVFLEQTGYTLDQVVGRNCRFLQGPLTDASTVEKLRDHISRGEDIGVTILNYKKDGTTFWNQLFVAALRDINERIVNFVGI 421
                 57899999999*************************************************************************************998 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   3.8       2.3   6.2e+03      31      50 ..      80      99 ..      73     102 .. 0.67
   2 !   38.9   6.2   1.8e-13   4.9e-10       1      47 [.     217     264 ..     217     268 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.3
  PF07716.10 31 eervkeLeeeNaqLrqkveq 50
                ++r+  L+e+N+  +q+++q
  MMETSP0890-20130614|4221_1 80 QQRAALLQEQNHLQQQQHQQ 99
                66777777777766666665 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 1.8e-13
  PF07716.10   1 kddeyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqk 47 
                 k+ e+ +rRr rNr+ Arr+R +kk   e+l+++v eLe+eNaqL++ 
  MMETSP0890-20130614|4221_1 217 KSQEQIDRRRdRNRILARRTRLRKKFFFESLQQQVAELEKENAQLKEI 264
                 688999***************************************985 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.9      0.38     1e+03      45      51 ..      66      72 ..      49     104 .. 0.56
   2 !   32.6   4.7   1.9e-11   5.1e-08       7      48 ..     223     264 ..     217     274 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.38
                .....HH CS
  PF00170.16 45 Lkkelee 51
                L ke+++
  MMETSP0890-20130614|4221_1 66 LSKEIDS 72
                5555543 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
  PF00170.16   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                  rr+ +NR+ Arr R+RKk   e L++ v+eLe+eN +Lk+ 
  MMETSP0890-20130614|4221_1 223 DRRRDRNRILARRTRLRKKFFFESLQQQVAELEKENAQLKEI 264
                 69*************************************965 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.79   2.2e+03      65      72 ..      82      89 ..      43     113 .. 0.56
   2 !   24.4   0.0   6.2e-09   1.7e-05       5     109 ..     315     421 ..     313     425 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.79
                HHHHH--E CS
  PF00989.19 65 lleqgees 72
                +++  +e+
  MMETSP0890-20130614|4221_1 82 RAALLQEQ 89
                22222222 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 6.2e-09
                 HCCCT--SBEEEES...----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS...SSSSEEEEEEEEEECS-S-E-.CEEEE CS
  PF00989.19   5 aileslpdpifvvD...edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl..rdgrpihlevraspvrdaggeilgflgv 109
                 ++++ +    +++D   ed  i+y+++ + e++G++ ++v+g++   l  + +   +a+ +e+l+ + +++++  +++    +dg++++ ++ ++ +rd+ ++i  f+g+
  MMETSP0890-20130614|4221_1 315 RLVQGAQKSFCITDpslEDNPIVYASSVFLEQTGYTLDQVVGRNCRFLQGPLT---DASTVEKLRDHISRGEDIGVTILNykKDGTTFWNQLFVAALRDINERIVNFVGI 421
                 689999999999**9999****************************5555544...777777777777777788887777888*********************999987 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.6e-05     0.045       1      90 [.     336     421 ..     336     422 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-05
   PF08447.6   1 iiyvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeelllkkgevysfeyRirrkdGeyrWveargrvirdengkpvrvigv 90 
                 i+y+s+ + e +Gy+ +++ g++    ++ l  p   + + e+l++  + +ge + + + + +kdG++ W +    ++rd n ++v ++g+
  MMETSP0890-20130614|4221_1 336 IVYASSVFLEQTGYTLDQVvGRN----CRFLQGPLTDASTVEKLRD-HISRGEDIGVTILNYKKDGTTFWNQLFVAALRDINERIVNFVGI 421
                 58999**************8888....8888889999999999999.7788888***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1717  (0.125585); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.96u 0.43s 00:00:01.39 Elapsed: 00:00:00.79
# Mc/sec: 1592.52
//
Query:       MMETSP0890-20130614|4224_1  [L=1271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-42  144.4   9.7    6.6e-42  143.5   6.8    1.4  1  PF06965.7 Na+/H+ antiporter 1
    1.8e-10   40.6   6.4      0.004   16.6   0.0    5.1  4  PF07565.8 Band 3 cytoplasmic domain
  ------ inclusion threshold ------
       0.22   11.0   5.7       0.65    9.5   3.9    1.8  1  PF04624.9 Dec-1 repeat


Domain annotation for each model (and alignments):
>> PF06965.7  Na+/H+ antiporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   6.8   1.4e-45   6.6e-42      42     368 ..     769    1121 ..     752    1131 .. 0.84

  Alignments for each domain:
  == domain 1    score: 143.5 bits;  conditional E-value: 1.4e-45
                  EEEE----EEEEEHHHHHHHHHHHHHHHH---HHHHHHH-.---SST.TTSHHHHHHH-----TTHHHHGGG--SS...........TTTT----SSS---HHHH.----TT----S-SSSHHHHHHHHHHHH---HHHHHHHS...-----TTT---HHHHHHHHHHHHH--------TTT-.--HHHHHTTT---HHHH--------S---TT--.......................--HHHHHHHHHHHHHHHTHHHHHHHHH-------------TTTS----------------TTTTTTTSS-TTT-------GGGGTT---------HHHHHHHHHH---.-SSHHHHH-------- CS
   PF06965.7   42 lglkvgalelelslkewindglmalFFllvglEikrelle.GeLrsk.kqallpviAalggmivPaliylllnaed...........pesvsGwaipaatDiAFa.lgvlallgkrvPaslkifllalaivDDlgailiiAlfy...seelslaalllallallvlallnrlgvrsllvylvl.gvvlWvavlksGvhatlagvilglliplkkkkse...................eeaesplerlehalhplvaflilPlFalanaGvslsgveldeltspltlgivlglvlGKpiGifllsflavklklaklpegiswkqilgvallaGigFtmslfiaeLafes.eelleeaklgilvgsl 368 
                  +gl+v   + + +++ ++nd++m++FF +   Ei   +   G+L  + ++a+ p++ +lg+++ P l+y+ll a             ++ ++Gw++p+atDi  a ++ + ++g   Pa    +ll  a++DD   +liiA+fy    + l+ ++lll ++a+l+  +l++l+  ++ vy+ l g + W+ +l + +h+ la   +  ++p+k ++++                   ++  spl+++e+ ++ +v f++l  Fa +naGv ++++       p    ++l+lv+GK+iG+ l s + v+l+   +p g+s+++++  ++++G+g t++lfia  af++ e l  +aklg l+ sl
  MMETSP0890-20130614|4224_1  769 FGLEV--NDHDVTIHFLVNDVFMSFFFGIAIKEITEAVQPgGSLYPPtSKAVNPMLGTLGAVLGPILFYFLLCAIAvstgivgafsfSDLAQGWGVPTATDISVAwVTAVVVFGAGHPAIN--YLLLCAVIDDGIGLLIIAIFYpdpENPLKPIWLLLVIVAMLISYILRKLQCARWQVYVFLaGPIAWFGLLYAAIHPSLALCFVVPFMPIKIEHATddlkdrlnnvgpdghlvdaHHRGSPLHDFEEGVKDFVDFFVLFAFAAVNAGVRFDDIG------PFSAVVFLALVIGKTIGLTLGSQIGVWLGFP-RPPGMSFQHLVISGVICGVGLTVALFIAGEAFSDdEVLEGQAKLGALL-SL 1121
                  44444..455678999********99988888999888763678765267888****************9875432111112222225678***********9985677889999999754..666679***************44446799**************************9986527899**************988888888888887789***************999999*********************************76......888889***********************96.689******************************97778889****998.44 PP

>> PF07565.8  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-06     0.013       3      43 ..      93     133 ..      91     281 .. 0.94
   2 !    6.4   0.1    0.0011       5.1     105     179 ..     370     452 ..     302     459 .. 0.61
   3 ?    1.3   0.0     0.039   1.8e+02     190     204 ..     524     538 ..     514     547 .. 0.82
   4 !   16.6   0.0   8.7e-07     0.004     202     252 ..     556     606 ..     553     611 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3e-06
   PF07565.8   3 eeetdrWgkphvatLsfhsLleLrkalekGtvlldleeksL 43 
                 + e+ +W+++h++t+s   ++ Lr++l+   + ld++ + +
  MMETSP0890-20130614|4224_1  93 DTEESKWTNAHLPTISVFGMMALRECLKAEYIYLDMQPEHI 133
                 57889*******************************98766 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0011
   PF07565.8 105 k....kaeqselslqkslelekakeseslekveeekkkanekllrk.ip..egaEAsvVLv.GevdfLeqpviafvRLseavl 179
                 +    ka  ++ +++ks + +k  e++ ++ +e+e+++   k++++ +   ++ EA  +++    d L++ v+ +vRL+ +v 
  MMETSP0890-20130614|4224_1 370 EgnimKAMPTKPRKKKSSAYSKFMEKKIINIKEKEQQQVVIKIKEDpLRpdAEEEAVHIMIdDNFDELKSDVVVLVRLQAPVI 452
                 13333333344444444455555555555555666667677776653331145678888884589**************9986 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.039
   PF07565.8 190 vrFlfvllGPsnsel 204
                  rFl+++lGP+++++
  MMETSP0890-20130614|4224_1 524 ARFLVLVLGPKKDHK 538
                 7*********99876 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 8.7e-07
   PF07565.8 202 seldYheigRaiatLmadevFhevaykAkdrkdLlaaideFLdesiVlPPg 252
                  + +++e+g a+a+Lm d+   ++ y+Ak  ++L++aid  L +  +lP +
  MMETSP0890-20130614|4224_1 556 YRRRHQEMGAAVAALMQDDAIVRALYEAKVPSELIEAIDLKLSAMRILPRT 606
                 567889*********************************999999999976 PP

>> PF04624.9  Dec-1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.9   0.00014      0.65       8      24 ..     624     645 ..     620     646 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00014
   PF04624.9   8 q....RQWtEeQAKiQqq.qqm 24 
                 q    R  +EeQAK+Qq  qq+
  MMETSP0890-20130614|4224_1 624 QlaeiRRVAEEQAKAQQLlQQQ 645
                 556668889********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.74u 0.40s 00:00:02.14 Elapsed: 00:00:01.12
# Mc/sec: 2695.37
//
Query:       MMETSP0890-20130614|4227_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-05   24.1  10.9      0.019   14.7   0.0    3.7  4  PF01844.18 HNH endonuclease
  ------ inclusion threshold ------
      0.016   14.9   0.3      0.051   13.3   0.2    1.8  1  PF06147.6  Protein of unknown function (DUF968)
        5.5    6.4  12.8        3.3    7.1   0.0    4.0  5  PF13240.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF01844.18  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.82   3.8e+03      34      40 ..      57      63 ..      47      65 .. 0.86
   2 ?   -2.9   0.1       1.3     6e+03       1       9 [.      95     103 ..      95     105 .. 0.75
   3 !   14.7   0.0   4.1e-06     0.019      29      46 ..     190     207 ..     182     208 .. 0.86
   4 !   14.3   0.9   5.5e-06     0.025       1      44 [.     277     319 ..     277     322 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.82
  PF01844.18 34 vllCksC 40
                +llC +C
  MMETSP0890-20130614|4227_1 57 ELLCFKC 63
                799*999 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.3
  PF01844.18   1 CqyCgrkgk 9  
                 C +C+ +++
  MMETSP0890-20130614|4227_1  95 CSRCRTPLH 103
                 889987765 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 4.1e-06
  PF01844.18  29 dlsNlvllCksCHrkkhr 46 
                 + +N++++C++C+ +k+ 
  MMETSP0890-20130614|4227_1 190 SRQNCITACATCNLMKGY 207
                 579*************86 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 5.5e-06
  PF01844.18   1 CqyCgrkgkkkdalevdHIiplsk.ggadd...lsNlvllCksCHrkk 44 
                 C+yCg++     +   +H   l++ + +d    ++N+v  C +C+ +k
  MMETSP0890-20130614|4227_1 277 CAYCGKP-----SNPPHHYNGLDRlDSQDRvyrPDNVVSSCGTCNIMK 319
                 ******6.....556699999998655555788************988 PP

>> PF06147.6  Protein of unknown function (DUF968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.1e-05     0.051     123     143 ..     270     290 ..     254     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
   PF06147.6 123 yfvkkqpCvicGkraddlhHl 143
                 +++++qpC+ cGk+   +hH+
  MMETSP0890-20130614|4227_1 270 NQIVSQPCAYCGKPSNPPHHY 290
                 45899***************8 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.37   1.7e+03      16      19 ..      60      63 ..      49      66 .. 0.63
   2 ?    7.1   0.0   0.00073       3.3      11      23 .]      90     102 ..      84     102 .. 0.81
   3 ?   -1.6   0.0       0.4   1.8e+03      16      21 ..     153     158 ..     140     159 .. 0.83
   4 ?    5.7   0.5     0.002       9.1      15      22 ..     276     283 ..     262     283 .. 0.81
   5 ?   -3.4   0.1       1.5   6.9e+03      18      21 ..     311     314 ..     310     314 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.37
   PF13240.1 16 CpyC 19
                C +C
  MMETSP0890-20130614|4227_1 60 CFKC 63
                7777 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00073
   PF13240.1  11 dgakFCpyCGtpl 23 
                 d+ ++C++C tpl
  MMETSP0890-20130614|4227_1  90 DEYQYCSRCRTPL 102
                 78899******97 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.4
   PF13240.1  16 CpyCGt 21 
                 C  CG+
  MMETSP0890-20130614|4227_1 153 CFGCGA 158
                 777875 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.002
   PF13240.1  15 FCpyCGtp 22 
                  C yCG+p
  MMETSP0890-20130614|4227_1 276 PCAYCGKP 283
                 4*****98 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 1.5
   PF13240.1  18 yCGt 21 
                  CGt
  MMETSP0890-20130614|4227_1 311 SCGT 314
                 6876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1010  (0.0738736); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.20s 00:00:00.93 Elapsed: 00:00:00.96
# Mc/sec: 966.03
//
Query:       MMETSP0890-20130614|4228_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.2   0.2    0.00025   20.5   0.1    2.5  2  PF00571.23 CBS domain
    3.9e-09   36.3   0.4     0.0009   18.8   0.1    4.2  4  PF07228.7  Stage II sporulation protein E (SpoIIE)
    4.1e-08   32.7   0.1    1.3e-07   31.1   0.1    1.8  1  PF13672.1  Protein phosphatase 2C
      5e-07   29.2   0.3     0.0021   17.3   0.1    2.2  2  PF00481.16 Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   7.4e-08   0.00025      12      56 ..      84     127 ..      69     128 .. 0.89
   2 !   17.6   0.0   5.6e-07    0.0019       1      54 [.     144     200 ..     144     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.4e-08
                 EETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHHH CS
  PF00571.23  12 vppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkall 56 
                 ++ + +++ea+ il +++ ++++ v + +r+ G++t rD+l +++
  MMETSP0890-20130614|4228_1  84 IDISCSVREAVAILTERRTGSAVAV-DAKRVMGVFTARDILAWIH 127
                 556779*******************.***************8875 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 5.6e-07
                 HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEEEEET..TEB---EEHHHHHHH CS
  PF00571.23   1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpVvDed..grlvGiitlrDllka 54 
                 v+ +mt+  +v  + p+++ls++ + +r+ gv+  pV        ++G++t  Dl  +
  MMETSP0890-20130614|4228_1 144 VSKVMTSseKVAWCAPRDKLSRVRSVMRALGVRNMPVL-CTasSAVIGMLTANDLADY 200
                 789**********************************6.4446************876 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7   5.8e+03      39      62 ..     132     155 ..     113     158 .. 0.76
   2 ?   -0.2   0.0      0.18   6.3e+02     100     125 ..     183     208 ..     169     279 .. 0.74
   3 !   10.2   0.0   0.00012       0.4      39      92 ..     408     468 ..     363     484 .. 0.70
   4 !   18.8   0.1   2.6e-07    0.0009     107     192 ..     536     662 ..     502     663 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.7
                 -HHHHHHHHHHHG.GG----.TT- CS
   PF07228.7  39 epaevlerlnealarnleeeerfa 62 
                 + +++l++lne +++ ++++e++a
  MMETSP0890-20130614|4228_1 132 SHDKILNALNESVSKVMTSSEKVA 155
                 568999999999988887776655 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.18
                 ---------.--.----EEE------ CS
   PF07228.7 100 vstglplGilpeadyeeaelqlepgd 125
                 +++++++G+l   d  +++l+l+ g 
  MMETSP0890-20130614|4228_1 183 TASSAVIGMLTANDLADYSLELKSGG 208
                 56777888888888888888888875 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00012
                 -.........HHHHHHHHHHHG.GG----.TT--EEE-EEES----EEEEEE-----EEE-TT CS
   PF07228.7  39 e.........paevlerlnealarnleeeerfatavlaeydpstgkleyanaGhpppllvrpd 92 
                 +         ++++l r+ + + ++       +ta+++ +d + + l+y+n+G++  +++r+ 
  MMETSP0890-20130614|4228_1 408 NsteeeqqplLHDMLYRAWRSVTQQQI--PGSTTACIVTIDHQVNALSYVNLGDSGLVVLRRA 468
                 245555566666777777777733333..3689***********************9999984 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 2.6e-07
                 --.--.----EEE------EEEEE-----...................S--HHHHHH....HHHHHT----------HHHHHHHHHHH...............................HCT----S-EEEEEEE- CS
   PF07228.7 107 GilpeadyeeaelqlepgdllllyTDGvt...................Eardpdgelfgkerllallaeaegesleelldalveelle...............................lgsgeleDDitllvlrv 192
                 +++  a++ +a+++l+  d+++++TDG++                      d    + +  +  ++ a+ +++++ + l+                                       l sg++ DD+t+++lrv
  MMETSP0890-20130614|4228_1 536 SFETPAHANVASFPLQDQDIIIVATDGLFdnvsvdhitdivaeweksaQ--DLSVAICESPHTVQTQATDSEAHVCHDLS-------AlahklahtartlsldehtdspfallakdndiLWSGGMPDDVTVIALRV 662
                 455568999********************66666666666665544330..33333333333332222222222222222.......1222233355556666666777777777999966789999999999987 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   3.7e-11   1.3e-07      13     187 ..     350     573 ..     344     595 .. 0.68

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 3.7e-11
   PF13672.1  13 qDafairedsdgwllaVaDGaGsak....rSdeGsrlaveaagealeelleeeeeqeeallrailneilaevklkaeaeaqqeelkdyatTlllav.itpgeivffqiGDgaivvrdrdgevqllgepds...........................geyanettfltsedaeeel.......................rvrrlklepvdalllmTDGlsnslrdeeafa 187
                 +Da+++ +  + +++ V DG+Gs +      +   r++++a+   +e+ ++++++q++   ++ ++ +l +  ++a ++ +q+++    t++++++ ++ + + ++++GD+++vv +r++++  +++pd                            +     +++  s+++ +e                        +v +++l++ d +++ TDGl ++++  ++ +
  MMETSP0890-20130614|4228_1 350 EDAHFVLQLPGLQYVGVFDGVGSWRklgvDPRLYPRALAHAVATEIEDAVQQQKFQNTNSTEEEQQPLLHDMLYRAWRSVTQQQIPGSTTACIVTIdHQVNALSYVNLGDSGLVVLRRASSLGTATIPDDdnrrkdksrrhlvlvapqqlrafnlpyQ-----LGWTNSRNVDSESstqqdnensyddglasfetpahaNVASFPLQDQDIIIVATDGLFDNVS-VDHIT 573
                 89*********************663333334446777777777777777777777444444444444444445555555666666666666666633346688********************9999986666666666665555555544333330.....444444443333377777777788888888888888*********************8885.33333 PP

>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00012      0.42      31     131 ..     370     469 ..     338     492 .. 0.63
   2 !   17.3   0.1   6.1e-07    0.0021     191     238 ..     541     587 ..     510     604 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
                 CCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX....XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSE...EEEEEE---EEEEEE--- CS
  PF00481.16  31 kssvaffavfdghggreaakyarehleeilkerksflele...klekalrksfladtdeelksseantepsksGstavvalirgqk...lyvAnvGDSravLcrsdn 131
                   s++ ++v  + + r +a+  ++ +e+ + ++++f++++   + ++ l    l   + +       t+++  Gst  +++ ++++   l   n+GDS  v+ r+  
  MMETSP0890-20130614|4228_1 370 VGSWRKLGVDPRLYPRALAHAVATEIED-AVQQQKFQNTNsteEEQQPLLHDMLY--RAWRSV----TQQQIPGSTTACIVTIDHQvnaLSYVNLGDSGLVVLRRAS 469
                 5566666666666667777777777776.44444455554332222222222222..122221....34566676666666666666**************998765 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 6.1e-07
                 ---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHTHHH CS
  PF00481.16 191 aePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkkspm 238
                 a+ +v s++++++ + +i+a+DGl+d +s +++ d+v +++++ ++++
  MMETSP0890-20130614|4228_1 541 AHANVASFPLQDQ-DIIIVATDGLFDNVSVDHITDIVAEWEKSAQDLS 587
                 5667778888888.5*************************99855443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.98
# Mc/sec: 1650.55
//
Query:       MMETSP0890-20130614|4230_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-28   98.0   0.0    6.4e-28   97.8   0.0    1.1  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   4.7e-32   6.4e-28      77     181 .]       4     108 ..       1     108 [. 0.92

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 4.7e-32
  PF01728.14  77 tqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlilaalklalellkpggnfvlklfk.geeae.ellkqlrkfFekvsvvkpkasrkesseeflvclgf 181
                 t+e il+ +    ++vdl+l+Dgap+vtgvh++d+ ++ qli aal ++ ++l ++g+fv+k+f+ ++ea+ +l  qlr++F  v+ vkp +sr++s+e+f+vc++f
  MMETSP0890-20130614|4230_1   4 TAEAILSKFAG--ERVDLILCDGAPEVTGVHQIDQNLHAQLIAAALLICKKILVKNGTFVAKVFRgTPEANeLLHAQLRTLFPIVHHVKPTSSRDRSAEAFVVCQQF 108
                 67788888864..69**************************************************54555669*******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.89
# Mc/sec: 376.96
//
Query:       MMETSP0890-20130614|4245_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-05   22.3   6.1    9.2e-05   22.0   4.2    1.2  1  PF05235.9 CHAD domain
     0.0019   16.1   0.2     0.0024   15.7   0.1    1.2  1  PF05879.7 Root hair defective 3 GTP-binding protein (RHD3)


Domain annotation for each model (and alignments):
>> PF05235.9  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   4.2   1.3e-08   9.2e-05      86     211 ..     100     274 ..      46     277 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.3e-08
   PF05235.9  86 e......ealkallerlearrrraherllaaldserytallqaleellaappllteae.................ee....akppaadvaakrldkahkklvkalkalal..............ep.....rdee.lHelRkaaKrlRYaleafasl...lpekglkkllkalkkl 211
                 e       a ++l+++l+ +  +ah++ l +l+++++ +l  +l++ l+  +++++ae                 ++      p++ ++ +++l+ a++ l++ ++ + +              +      +d++  H +R aaK l  +  +++ +   l + ++++ ++a+k++
  MMETSP0890-20130614|4245_1 100 EdtskrsDARHQLVHDLANALSAAHADHLVTLRQAAVDDLTNKLQA-LDLHEKVDDAErirawatvatdveiafrTKideaTPPQFLPLFSASLEDALETLRDDFRNIFEefelsrpldlddldDDiedkaSDDNnEHPVRSAAKLLASSPRFLRAAgfiLNVLQARAAIRAAKNA 274
                 0223444689**********************************87.444555555634778887777666665511556688999*********************999998898887776651155566566549**********99999998664444666677777777765 PP

>> PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.5e-07    0.0024     259     375 ..      47     159 ..      41     230 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.5e-07
   PF05879.7 259 ianevleefiaaiaeleekqrelke..aaeaglleelgkklaslrekaleeydteAsr.yekgvyeeKrqeLeekvdsklkalfqavlealrkellekfkeavekalkagedFaesvkek 375
                 +a+e  e f+a+      +  el +  a+++ +l ++g++l s+ +++l+ y++      + + +++ r++L + + + l+a+ +++l  lr++++++++++++ al+  e+  ++ +  
  MMETSP0890-20130614|4245_1  47 VAEELAERFAAE------DAVELVNavAQASVPLIDFGERLGSAVKAVLTLYEQITVNeEDTSKRSDARHQLVHDLANALSAAHADHLVTLRQAAVDDLTNKLQ-ALDLHEKVDDAERIR 159
                 556666666655......33344430044556778*****************9876551456778999**********************************99.777666443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.74
# Mc/sec: 932.64
//
Query:       MMETSP0890-20130614|4244_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-07   30.1   0.0    4.1e-07   29.6   0.0    1.2  1  PF00787.19 PX domain
  ------ inclusion threshold ------
        1.6    8.6   4.8        2.3    8.1   3.3    1.2  1  PF03729.8  Short repeat of unknown function (DUF308)


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     6e-11   4.1e-07      14      96 ..      23     105 ..      10     118 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 6e-11
                 E...CETSSEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTT..TSTSTS--TTSSSHHCGTTSHHHHHHHH.HHHHHHHHHHHH CS
  PF00787.19  14 k..gskkhsyylievelktgakewtvkRrYsdFeeLhskLlrkfp..rlklPplPkkvlfgsvrkkdeefiekrr.kgLeeyLqrlln 96 
                    g+ + ++y iev +++g +++++++rYsd  ++h++ l+      l+   +P+k+ f +    + ef ++rr +g+eey++ ll+
  MMETSP0890-20130614|4244_1  23 VdvGGQILTLYPIEVMYEDG-NMRKLSKRYSDVLRFHKEVLKGAShpALEGFNFPHKSMFNT----SAEFTKERRrSGFEEYFELLLR 105
                 2457888899*********9.*******************9965555*************87....778877665389****998775 PP

>> PF03729.8  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.3   0.00034       2.3      11      71 ..     172     237 ..     172     238 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00034
   PF03729.8  11 ilalllPgaallalv.lliGilllvsGilqliaafa....rrkggggrwlglllGilsiiaGilll 71 
                 +lal+ P  a+ +l+ +++ +++ v + +ql++a+     +++++g+ wl ll++ l++ +++ ll
  MMETSP0890-20130614|4244_1 172 VLALARPHSAGHWLAfFYFPVFFSVYAYAQLLTALGaikpSDWSSGAAWLALLSSPLLLTVAFALL 237
                 689***********99***************988888779999999********999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 801.98
//
Query:       MMETSP0890-20130614|4253_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-24   82.9   0.0    4.8e-13   48.2   0.0    2.1  2  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.024   14.2   0.0        3.7    7.1   0.0    2.6  2  PF07892.6 Protein of unknown function (DUF1667)
      0.048   13.4   0.1        3.5    7.4   0.0    2.6  3  PF10756.4 Protein of unknown function (DUF2581)
      0.071   12.0   0.0      0.077   11.8   0.0    1.1  1  PF11294.3 Protein of unknown function (DUF3095)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   8.1e-12   2.8e-08      19      49 .]       1      31 [.       1      31 [. 0.95
   2 !   48.2   0.0   1.4e-16   4.8e-13       1      35 [.      33      67 ..      33      74 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 8.1e-12
   PF13475.1 19 lseeLknDkeivlkAvkqngsalsyaseeLr 49
                ++eeLknD+eivl Av  +g al+yas eL+
  MMETSP0890-20130614|4253_1  1 ANEELKNDREIVLTAVTHDGRALEYASLELK 31
                579************************9987 PP

  == domain 2    score: 48.2 bits;  conditional E-value: 1.4e-16
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvk 35
                DrEivl+av+++g alky+++eLknD+eivl A +
  MMETSP0890-20130614|4253_1 33 DREIVLAAVTQDGGALKYANDELKNDREIVLLAAE 67
                9******************************9966 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0011       3.7       7      40 ..       1      36 [.       1      43 [. 0.71
   2 ?    2.8   0.0     0.025        85       4      18 ..      48      62 ..      46      69 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0011
   PF07892.6  7 akkeltnpkriltstVkveggelplvp..Vktskpi 40
                a++el+n + i+ + V  +g  l+  +   k++++i
  MMETSP0890-20130614|4253_1  1 ANEELKNDREIVLTAVTHDGRALEYASleLKSDREI 36
                678999999999999999988766555115666666 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.025
   PF07892.6  4 eeYakkeltnpkril 18
                 +Ya++el+n + i+
  MMETSP0890-20130614|4253_1 48 LKYANDELKNDREIV 62
                58********99998 PP

>> PF10756.4  Protein of unknown function (DUF2581)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.011        36      42      57 ..       4      19 ..       2      26 .. 0.82
   2 ?    7.4   0.0     0.001       3.5      34      59 ..      21      46 ..      19      57 .. 0.83
   3 ?   -1.0   0.0      0.44   1.5e+03      42      55 ..      54      67 ..      44      73 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.011
   PF10756.4 42 dlrdgelvplpavqlg 57
                +l+ +++++l+av+++
  MMETSP0890-20130614|4253_1  4 ELKNDREIVLTAVTHD 19
                6889**********97 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.001
   PF10756.4 34 rgrrlarldlrdgelvplpavqlgdd 59
                r++ +a l+l+++++++l av+ + +
  MMETSP0890-20130614|4253_1 21 RALEYASLELKSDREIVLAAVTQDGG 46
                566779***************98754 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.44
   PF10756.4 42 dlrdgelvplpavq 55
                +l+ +++++l a +
  MMETSP0890-20130614|4253_1 54 ELKNDREIVLLAAE 67
                67788888888755 PP

>> PF11294.3  Protein of unknown function (DUF3095)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05     0.077     119     180 ..      16      81 ..      10      84 .] 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
   PF11294.3 119 iraegldvrvarfaaseevsy...amf.sGgglawaEekiKageyaieaadketapdLtGlsCrwd 180
                 ++++g+ ++ a ++++++ ++   a+   Gg+l++a++++K+++  +  a++++ pd+ G    w 
  MMETSP0890-20130614|4253_1  16 VTHDGRALEYASLELKSDREIvlaAVTqDGGALKYANDELKNDREIVLLAAEKKVPDIYGVGTFWA 81 
                 556666666666655544333111333259*****************************9877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|4257_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.7   0.0     0.0022   17.5   0.0    1.2  1  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-07    0.0022      20      53 ..      13      46 ..       8      59 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.6e-07
  PF06743.10 20 effeklasalereLdsispelllnlvwSlclley 53
                 ff+++a +  +++d+++p++l n+ w+++ +  
  MMETSP0890-20130614|4257_1 13 DFFNAIADVAVTKIDKFDPQNLANTSWAFATASV 46
                4****************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 228.58
//
Query:       MMETSP0890-20130614|4249_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-25   87.9   0.0    2.8e-24   85.1   0.0    2.4  1  PF01764.20 Lipase (class 3)
    6.3e-09   35.4   0.0    1.3e-08   34.4   0.0    1.5  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
      0.039   13.6   0.5      0.099   12.3   0.3    1.6  1  PF02609.11 Exonuclease VII small subunit


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0     6e-28   2.8e-24       2     139 ..     359     545 ..     358     548 .. 0.94

  Alignments for each domain:
  == domain 1    score: 85.1 bits;  conditional E-value: 6e-28
                 EEEE-E-SHHHHHHHHHHTECCCTTCGGS..............TT-EEE---HHHHHHHHHHHHHHHHHHHHHST.TSEEEEE-------HHHHHHH....................................HHHHT-...TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S- CS
  PF01764.20   2 vafRGtetaeewltdldislvevdellek..............eggkvhkgfleayksareqvlkelkrllekyp.dykivvtGHSLGGalAlLaaa....................................dlaenglnksslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlpp 139
                 vafRGt+++++++td  +  +++    ++               +++vh gf +a+ s++ ++++ +   +  +p d+++ +tGHSLGGalA+++a+                                    d+ e+ l + ++ +++tfG+Pr+g+ +fa ++++ l    ++rvvn +D+v rlp 
  MMETSP0890-20130614|4249_1 359 VAFRGTSEPKDIITDASALITPFARAASRslgddhddsvpaalGDPHVHAGFRTALDSVARRLKQLIMIAVDDNPgDWELELTGHSLGGALATIFALdvaagidasralpvrpqigrswfdprriflakneniDFSETILPRFQDTSLLTFGSPRTGDGAFASALDSCLSR--SYRVVNGQDVVARLPR 545
                 8***********************99988**************************************9988888879**********************************************997777777766666666699**********************88888..**************96 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.8e-12   1.3e-08       1      82 [.     103     204 ..     103     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.8e-12
                 EEEEEEEESS--S-S.......TSSSS-EEEEEEEECTTE.EE........EEE--BSS-...SSEEEE.EEEEEEESCGGGTEEEEEEEECHSSSCSEE-- CS
  PF00168.25   1 LkvkvieAknLpnkd.......kngtsdpyvkvslggaks.kk........krTrviknt...lnPvWn.ekftfevvaeelaeleleVkdedrfgkddflG 82 
                 L+vk++ A+nLp            + sdpyv  ++ ++++ kk        +r+++i +       +W+ e+ft+ v ++  a+l ++V+ded+ + dd++G
  MMETSP0890-20130614|4249_1 103 LRVKLHAAQNLPEQRelaevalTGSGSDPYVLFTVVDEAKsKKnalnatdvARSSTIWRRgkqDQVKWEnEEFTLFVRDPRQAQLAITVMDEDVASDDDLIG 204
                 89***********88******8778************9996559*******8888887654457899*99******************************99 PP

>> PF02609.11  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.2e-05     0.099       5      30 ..      21      46 ..      19      48 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.2e-05
  PF02609.11  5 laeLeeivekLEsgelsLeeslklye 30
                l+eLe+++  L+ ++  L +sl+ly+
  MMETSP0890-20130614|4249_1 21 LDELETMITALQAENAALKQSLALYQ 46
                89***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       607  (0.0443973); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.19u 0.40s 00:00:01.59 Elapsed: 00:00:01.03
# Mc/sec: 1793.78
//
Query:       MMETSP0890-20130614|4252_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-24   83.6   5.8    1.2e-23   82.7   4.0    1.5  1  PF08240.7  Alcohol dehydrogenase GroES-like domain
      1e-16   60.5   0.2    2.4e-16   59.3   0.0    1.7  2  PF00107.21 Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.12   11.3   0.0       0.19   10.7   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   4.0   2.7e-27   1.2e-23       3     109 .]      32     151 ..      30     151 .. 0.93

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 2.7e-27
                 EEEEEEEEB---HHHHHHH--.TTTT--SSEE----BE-EEEEE----B------EEEE--EEE.-SSSHHHHTT-GGG-..........STBEE---B...-----BSEEEECGGGEEEE CS
   PF08240.7   3 evlvkvkaaGiCgsDlhivkgekelevklplilGhEivGiveevgegvkklkvGdrvvveplis.cgeCeaCkegeenlc..........eeakllgvk...ldGgfaeyvvvpekklvkl 109
                 e  +++ ++G+C++D+h++++ ++  +++pl++GhE++Giv ++g+ vk+ kvGd+v v+++   c +C++C  g+en+c          ++a+++g +   + G+f++ + v+++ +vk+
  MMETSP0890-20130614|4252_1  32 ELELDMICCGLCHTDIHMRDN-DWGVANYPLVPGHEGIGIVRAIGSAVKTHKVGDKVSVAWIRDsCLDCDSCACGRENICqkgyqgtylaSNAGIFGKEacnTFGCFSKIMHVSARFCVKI 151
                 778999**************9.8*************************************99989***************999888888888888887799899**************986 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.7   3.2e+03      65      89 ..     165     188 ..     161     190 .. 0.84
   2 !   59.3   0.0   5.3e-20   2.4e-16       1     129 [.     191     317 ..     191     318 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.7
                 ET-.CTHHHHHHHCB-----EEEC- CS
  PF00107.21  65 cvgagatfeqalkllapgGrvvvvg 89 
                 c g g  fe  + +++pg ++ + g
  MMETSP0890-20130614|4252_1 165 CGG-GTVFEPIMTHCQPGTKLGIAG 188
                 777.9999999999*9999998877 PP

  == domain 2    score: 59.3 bits;  conditional E-value: 5.3e-20
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-..CTHHHHHHHCB-----EEEC----..EEEEEEEHHHHHHCT--EEE--SSSHHHHHHHHHHHH CS
  PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvg.agatfeqalkllapgGrvvvvggts..ganvefdlrklllkektiqGsllgnpeeleealqlla 129
                 G+G+aa++lAk +G  +ia++ss+ k++ a + G+ +++  +d+   + + +  g+  +dv+++++  + + +  ++ ll+ +G  + vg++   +++ +fd+ +l++++kti+Gs++ ++ +l ++ +l+a
  MMETSP0890-20130614|4252_1 191 GLGTAAIKLAKLRGVVPIAISSSPGKKQAALAAGCSDFLVINDD---ADVEKWAGK--IDVILDTTPvNTQPVAKYMGLLKFDGVYCRVGVPPasDQKFSFDFLPLIFTQKTICGSIVTGTYRLDKMYKLVA 317
                 89************************************999998...89******9..******987145789999********************************************999999988887 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.2e-05      0.19      36      76 ..     181     221 ..     171     256 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.2e-05
                 GSEEE-B-------HHHHHHHH---EEEE--SS--...HHH CS
  PF02826.14  36 gktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeee 76 
                 g ++Gi G+G +G+a++k++k  g+  +a++ s+ k++ + 
  MMETSP0890-20130614|4252_1 181 GTKLGIAGIGGLGTAAIKLAKLRGVVPIAISSSPGKKQAAL 221
                 789*********************99999999977665333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.63
# Mc/sec: 1376.95
//
Query:       MMETSP0890-20130614|4261_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-21   77.6   0.0    2.1e-21   76.8   0.0    1.4  1  PF00929.19 Exonuclease


Domain annotation for each model (and alignments):
>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   1.5e-25   2.1e-21       3     164 .]     247     391 ..     245     391 .. 0.94

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 1.5e-25
                 EEEEE----TTT--EEEEEEEEEETTEE.EEEEEEEEEE-SSS.S--HHHHHH----HHHHTTSEEHHHHHHHHHHHHCHS-EEEETSHHHHCCHHHHHHHHCTTS-TTECGGGGECCCHHHHHCHHC---SHHHHHHHCT--STS-.TTHHHHHHHHHHHHH CS
  PF00929.19   3 iDcEttgldaekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklempkrndvldtlildkktlkelkrtslkklaekllleeiqr.aHrAldDarataelf 164
                 +DcE++   +    + e+a++s+ +g   +++ fd +vkp++   + d++t+ +gi++++l+         ++l + ++   l +  n  +++g++l++dlr+lkl +p     +++l +++ +   +k  sl++la  +l ++iq+  H++++Dara+++lf
  MMETSP0890-20130614|4261_1 247 LDCEMVQSVN----GSELARFSLIDGS--GDVIFDSLVKPQVS--VVDYCTKWSGINEKMLRS------ITTTLAQAQAAILLTIRSN-DILIGHSLENDLRALKLIHP--TCGDTSLLYSHPRGDSYKF-SLRQLASDYLERSIQNgSHDSVEDARAALDLF 391
                 8*****9999....9************..9*************..******************......8999999999888888877.********************..6578999999999999998.*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:01.11
# Mc/sec: 1245.67
//
Query:       MMETSP0890-20130614|4265_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-38  131.2   1.4    1.3e-38  130.9   0.9    1.1  1  PF02943.10 Ferredoxin thioredoxin reductase catalytic beta chain


Domain annotation for each model (and alignments):
>> PF02943.10  Ferredoxin thioredoxin reductase catalytic beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.9   9.3e-43   1.3e-38       2     107 ..      57     158 ..      56     160 .. 0.97

  Alignments for each domain:
  == domain 1    score: 130.9 bits;  conditional E-value: 9.3e-43
  PF02943.10   2 elektkkfaekyakksgtvfnpdeevtevvlegLarnkekygkelCPCrlyekkeeevsaddwiCPCvpmrerkeedGvChCglflteenefageeqeiekeelke 107
                  le ++ f+++y+k s+tv+++d++vt+vv++gLa++k ++g++lCPCr+ye+k+ e++  +w+CPCvpmrerke    ChC+lflte+n+fage+q+i+ ee+++
  MMETSP0890-20130614|4265_1  57 ALEIMTAFSNRYVKLSNTVYCADHSVTSVVIRGLAEHKVTLGAPLCPCRFYEDKNVEAKDGYWNCPCVPMRERKE----CHCMLFLTEDNDFAGESQDISIEEVNN 158
                 5899***********************************************************************....**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 546.77
//
Query:       MMETSP0890-20130614|4258_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-22   77.0  43.2    1.3e-07   31.0   5.0    3.6  3  PF00628.24 PHD-finger
    1.8e-10   39.8  37.0    1.2e-05   24.3   2.2    4.7  5  PF13831.1  PHD-finger
    5.3e-09   36.0  26.4    0.00043   20.2   1.4    3.9  3  PF13771.1  PHD-like zinc-binding domain
    2.7e-05   23.9  23.6      0.015   15.1   0.6    3.7  3  PF13832.1  PHD-zinc-finger like domain
     0.0019   16.1  27.9     0.0019   16.1  19.3    2.1  2  PF04147.7  Nop14-like family
     0.0057   16.2   4.2     0.0057   16.2   2.9    4.3  4  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
     0.0068   16.3   4.4     0.0068   16.3   3.1    4.7  5  PF00684.14 DnaJ central domain
  ------ inclusion threshold ------
      0.015   14.5  20.3      0.038   13.2   9.4    2.3  2  PF12118.3  SprA-related family
       0.36    8.9   4.1       0.45    8.6   1.0    2.1  2  PF03547.13 Membrane transport protein
        1.1    8.3  38.7        2.3    7.2  20.8    2.2  2  PF05285.7  SDA1
          6    4.3  19.5       0.23    9.0   9.4    1.6  2  PF05758.7  Ycf1
        9.7    4.5  16.8        2.2    6.6   7.4    2.1  2  PF04499.10 SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   7.7   2.3e-09   2.7e-06       2      50 ..     210     253 ..     209     254 .. 0.88
   2 !   31.0   5.0   1.2e-10   1.3e-07       2      50 ..     276     322 ..     275     323 .. 0.91
   3 !   30.9   6.1   1.2e-10   1.4e-07       2      50 ..     388     430 ..     387     431 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.3e-09
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCke 50 
                 C  Cg+    g+l++Cd+C+ +fHlkC gl++ + e++  +w C+ C++
  MMETSP0890-20130614|4258_1 210 CYECGQ---FGQLLCCDECNLSFHLKCSGLDEFPPEDE--HWACPVCRP 253
                 888888...9*********************9866664..7******97 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 1.2e-10
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCke 50 
                 C+ Cg++d++ e++ C +Ck++fH+ C gl+ +++++    w C eC  
  MMETSP0890-20130614|4258_1 276 CSSCGGDDTQVEVIDCAQCKKSFHYTCSGLQRSPSKRIP--WSCLECVA 322
                 *******************************99777765..******75 PP

  == domain 3    score: 30.9 bits;  conditional E-value: 1.2e-10
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCke 50 
                 C  C++   +g+l+lCd+C++++H+ C glk  ++ek    w+C+ C+e
  MMETSP0890-20130614|4258_1 388 CYKCKR---YGNLILCDKCQRSYHYRCAGLKTIPTEK---VWFCPICHE 430
                 777888...9*********************997777...5******87 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   2.3   8.1e-08   9.2e-05       3      36 .]     218     252 ..     216     252 .. 0.88
   2 ?   -1.3   0.1       1.1   1.2e+03       4      10 ..     273     279 ..     271     280 .. 0.80
   3 !   14.0   2.8   1.9e-05     0.021       4      35 ..     288     320 ..     286     321 .. 0.90
   4 ?   -2.6   0.2       2.8   3.2e+03      18      21 ..     388     391 ..     382     393 .. 0.56
   5 !   24.3   2.2   1.1e-08   1.2e-05       4      35 ..     397     428 ..     395     429 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 8.1e-08
   PF13831.1   3 pllvCskCsvaVHasCYGvseesegee.WlCrrCe 36 
                 +ll C++C++++H +C G  e + ++e W C  C+
  MMETSP0890-20130614|4258_1 218 QLLCCDECNLSFHLKCSGLDEFPPEDEhWACPVCR 252
                 899****************987777666***9995 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.1
   PF13831.1   4 llvCskC 10 
                 + +Cs+C
  MMETSP0890-20130614|4258_1 273 IKTCSSC 279
                 7889999 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.9e-05
   PF13831.1   4 llvCskCsvaVHasCYGvseesegee.WlCrrC 35 
                 ++ C +C+ ++H  C G + ++++   W C  C
  MMETSP0890-20130614|4258_1 288 VIDCAQCKKSFHYTCSGLQRSPSKRIpWSCLEC 320
                 789*****************9998547***999 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 2.8
   PF13831.1  18 CYGv 21 
                 CY++
  MMETSP0890-20130614|4258_1 388 CYKC 391
                 3333 PP

  == domain 5    score: 24.3 bits;  conditional E-value: 1.1e-08
   PF13831.1   4 llvCskCsvaVHasCYGvseesegeeWlCrrC 35 
                 l+ C+kC+ ++H +C G +++++++ W C  C
  MMETSP0890-20130614|4258_1 397 LILCDKCQRSYHYRCAGLKTIPTEKVWFCPIC 428
                 799*********************99***999 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.3   1.3e-05     0.015      15      67 ..     186     235 ..     180     252 .. 0.85
   2 !    8.7   4.7    0.0015       1.7      26      66 ..     263     303 ..     244     311 .. 0.70
   3 !   20.2   1.4   3.7e-07   0.00043      28      70 ..     377     416 ..     359     436 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-05
   PF13771.1  15 nakelemepvesvekiakerrklkCslCkkkkGaciqCskkkCkrafHvtCak 67 
                 ++++ e+e+ e++e+ +++++++ C+ C +  G  + C++  C+ +fH+ C  
  MMETSP0890-20130614|4258_1 186 QDQDREKESDEEIEQDQSDENDDWCYECGQF-GQLLCCDE--CNLSFHLKCSG 235
                 4444678999*********************.******98..*********75 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0015
   PF13771.1  26 svekiakerrklkCslCk..kkkGaciqCskkkCkrafHvtCa 66 
                 s ++ +  r+ ++Cs C    ++  +i+C +  Ck++fH+tC 
  MMETSP0890-20130614|4258_1 263 SHNNNVPVREIKTCSSCGgdDTQVEVIDCAQ--CKKSFHYTCS 303
                 3445555667789****95534678899988..*********6 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 3.7e-07
   PF13771.1  28 ekiakerrklkCslCkkkkGaciqCskkkCkrafHvtCakeag 70 
                 e  + ++++++C+ Ck+  G  i C+k  C+r++H+ Ca  + 
  MMETSP0890-20130614|4258_1 377 EARSVSANDDTCYKCKRY-GNLILCDK--CQRSYHYRCAGLKT 416
                 4556677899********.******98..*********97655 PP

>> PF13832.1  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   1.2   0.00039      0.44      38      88 ..     189     237 ..     179     247 .. 0.70
   2 !    9.0   4.5    0.0011       1.2      23      86 ..     245     304 ..     240     323 .. 0.73
   3 !   15.1   0.6   1.3e-05     0.015      53      88 ..     383     415 ..     332     441 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00039
   PF13832.1  38 eaemepvd.vekivkerlklkcvlCkkkkGaciqCskgeCktafHvtCalka 88 
                  +e+e  + +e+ ++++  + c+ C +  G  + C +  C+ +fH  C    
  MMETSP0890-20130614|4258_1 189 DREKESDEeIEQDQSDENDDWCYECGQF-GQLLCCDE--CNLSFHLKCSGLD 237
                 333333334777777788899****995.88777776..*********8655 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0011
   PF13832.1  23 HvvCallvpevsfsneaemepvdvekivkerlklkcvlCkkk..kGaciqCskgeCktafHvtCal 86 
                 H  C ++ p ++ ++e++ +    ++ v+ r  ++c+ C     +   i C++  Ck++fH tC  
  MMETSP0890-20130614|4258_1 245 HWACPVCRPATDAAKEKKSH----NNNVPVREIKTCSSCGGDdtQVEVIDCAQ--CKKSFHYTCSG 304
                 56666666666655555433....33344445679999987765778899999..*********75 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.3e-05
   PF13832.1  53 rlklkcvlCkkkkGaciqCskgeCktafHvtCalka 88 
                    ++c+ Ck+ +G  i C k  C++++H  Ca  +
  MMETSP0890-20130614|4258_1 383 ANDDTCYKCKR-YGNLILCDK--CQRSYHYRCAGLK 415
                 34689999987.7******99..*********9765 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  19.3   1.6e-06    0.0019     289     389 ..     115     207 ..     107     293 .. 0.67
   2 ?    0.3   1.1     0.094   1.1e+02     348     390 ..     358     451 ..     326     480 .. 0.50

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.6e-06
   PF04147.7 289 eeRlrRmrgeeeddeeeedsekesaddlddefeedddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                 +e    m+  +e+++ee ++    ++d+dde  ++ de++++++++e + e e ++ e+e +e++++d e +e+d++ +++++ e++++++ e+++++e++
  MMETSP0890-20130614|4258_1 115 QEQAPKMSSNVESSQEETKQ----SEDQDDE--KESDEEIEQDHEKESDAEIE-QDHEKESDEKIEEDRE-KESDAEIEQDQDREKESDEEIEQDQSDEND 207
                 66677888888888888876....8999999..56667776664444444444.6777777777777877.788888877777777777777777766665 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.094
   PF04147.7 348 edeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee................................................................a 390
                 e+++ +d+d+       d  +e++de  + s ++       +                                                                +
  MMETSP0890-20130614|4258_1 358 ENDAMSDEDKT------DVMDEDDDEARSVSAND-------DtcykckrygnlilcdkcqrsyhyrcaglktiptekvwfcpicheeeeatptknntisrtasfsrK 451
                 34444444444......22222222222222222.......133333346667777777777777777777777777777777655555555554444443333322 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.9     5e-06    0.0057      11      44 ..     207     235 ..     200     240 .. 0.89
   2 !    8.3   2.7    0.0014       1.6       9      43 ..     271     303 ..     264     312 .. 0.86
   3 ?   -2.7   0.1         4   4.6e+03      27      34 ..     313     320 ..     305     322 .. 0.81
   4 !    8.9   3.1   0.00099       1.1      13      44 ..     387     413 ..     379     421 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5e-06
                 --B-TTT-SB---------EETTT--B--STT-- CS
  PF00130.17  11 ptfCkhCgkflwgkgkqglkCswCqllvHkkCfe 44 
                   +C  Cg+f      q l+C++C+l++H kC  
  MMETSP0890-20130614|4258_1 207 DDWCYECGQFG-----QLLCCDECNLSFHLKCSG 235
                 679******99.....****************75 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0014
                 SS--B-TTT-SB---------EETTT--B--STT- CS
  PF00130.17   9 kqptfCkhCgkflwgkgkqglkCswCqllvHkkCf 43 
                 ++ ++C+ Cg          + C++C++++H  C 
  MMETSP0890-20130614|4258_1 271 REIKTCSSCGGDD--TQVEVIDCAQCKKSFHYTCS 303
                 6678899998877..8999***************7 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 4
                 ---EETTT CS
  PF00130.17  27 qglkCswC 34 
                  +++C +C
  MMETSP0890-20130614|4258_1 313 IPWSCLEC 320
                 57999999 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.00099
                 B-TTT-SB---------EETTT--B--STT-- CS
  PF00130.17  13 fCkhCgkflwgkgkqglkCswCqllvHkkCfe 44 
                 +C +C+        + + C+ Cq+++H +C+ 
  MMETSP0890-20130614|4258_1 387 TCYKCKRYG-----NLILCDKCQRSYHYRCAG 413
                 455555554.....7889************86 PP

>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.5       2.4   2.8e+03      43      63 ..     209     226 ..     193     228 .. 0.76
   2 !   16.3   3.1     6e-06    0.0068       3      63 ..     232     295 ..     231     297 .. 0.85
   3 ?    0.0   0.1       0.7     8e+02       3      23 ..     301     322 ..     300     341 .. 0.80
   4 ?    5.6   0.3     0.013        15      36      63 ..     380     404 ..     370     407 .. 0.78
   5 ?   -0.1   0.1      0.76   8.7e+02       4      25 ..     411     432 ..     409     454 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.4
  PF00684.14  43 tCekCkGkGkiiekkkCkkCk 63 
                  C +C+  G+      C++C+
  MMETSP0890-20130614|4258_1 209 WCYECGQFGQLL---CCDECN 226
                 588888888887...677775 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 6e-06
  PF00684.14   3 kCkGtgakkgkkvk.tCkkCnGsGvvvkeqr..apggvvqsqqtCekCkGkGkiiekkkCkkCk 63 
                 kC+G ++ + ++++  C+ C+      ke++  ++++ v++ +tC++C+G  +++e  +C +Ck
  MMETSP0890-20130614|4258_1 232 KCSGLDEFPPEDEHwACPVCRPATDAAKEKKshNNNVPVREIKTCSSCGGDDTQVEVIDCAQCK 295
                 699988877777767*****998777766665688999*****************9*******8 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.7
  PF00684.14   3 kCkGtgakkgkkvk.tCkkCnG 23 
                 +C+G + +++k+++ +C +C  
  MMETSP0890-20130614|4258_1 301 TCSGLQRSPSKRIPwSCLECVA 322
                 6999999999998889999965 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.013
  PF00684.14  36 gvvqsqqtCekCkGkGkiiekkkCkkCk 63 
                  v  +  tC kCk  G+ i    C+kC+
  MMETSP0890-20130614|4258_1 380 SVSANDDTCYKCKRYGNLI---LCDKCQ 404
                 55667889**********9...777775 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.76
  PF00684.14   4 CkGtgakkgkkvktCkkCnGsG 25 
                 C G ++ + +kv  C+ C+ + 
  MMETSP0890-20130614|4258_1 411 CAGLKTIPTEKVWFCPICHEEE 432
                 8888888888888888887555 PP

>> PF12118.3  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   9.4   3.3e-05     0.038      65     138 ..     112     196 ..      20     212 .. 0.51
   2 ?    5.6   0.3    0.0068       7.8      48     155 ..     336     486 ..     252     489 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-05
   PF12118.3  65 stseeqfaevkgqaeaqasqaeeeaekaaseknee............eeaaeeeeekqqaaaeeeekeeeqeqaeqqeqekqaqek 138
                 +  +eq+ +++++ e+++++++++++++++++++e            e  +  e+e +++ +e++eke++ e +++q +ek ++++
  MMETSP0890-20130614|4258_1 112 QIPQEQAPKMSSNVESSQEETKQSEDQDDEKESDEeieqdhekesdaEIEQDHEKESDEKIEEDREKESDAEIEQDQDREK-ESDE 196
                 222222222222222222222222222222222220000000000001111111111111111122222222222211111.1122 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0068
   PF12118.3  48 ssssataetqsknseaqstseeqfaevkgqaeaqasqaeeeaekaaseknee.........................................eeaaeeeeekqqaaa..eeeekeeeqeqaeqqeqekqaqekaqeqqeaqvaeLkaRDa 155
                 ++++++ +t++++   +s+   +  ++++++++++ +++++++++ s++++                                          +e +e +++k+++ +  +++ ++++++  +++   +++++++  ++   ++ L+ RD+
  MMETSP0890-20130614|4258_1 336 IEKKTSSKTKAHRDVLRSEPPLENDAMSDEDKTDVMDEDDDEARSVSANDDTcykckrygnlilcdkcqrsyhyrcaglktiptekvwfcpicHEEEEATPTKNNTISrtASFSRKSNKKRPKSNGSPSTKKKQKNDHKIPSIKPLEPRDR 486
                 2222333333355555555566666666666677777666666666666666888888899999999999999999999999999999998884344444444444330033333333333333333333333333334557899999986 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.0    0.0004      0.45     144     225 ..     105     185 ..      78     393 .. 0.71
   2 ?    0.5   0.0      0.11   1.3e+02     183     218 ..     433     471 ..     421     512 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0004
  PF03547.13 144 lfesrgaklliseefpetaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs.stprpsnltnaeiy 225
                 +++ +++++++ e++p+  +s+v+  +++ + s d+ +  e +eei++d    ++    ++ ++++++ +++ +++++ aei+
  MMETSP0890-20130614|4258_1 105 IIKPQQEQIPQ-EQAPK-MSSNVESSQEETKQSEDQDDEKESDEEIEQDHEKESDAEIEQDHEKESDEkIEEDREKESDAEIE 185
                 55544444444.66664.45555555555555555555666666666666666655555555555555544444444444444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.11
  PF03547.13 183 leteeeikedgklhvtvrksnasrsdivs...stprpsn 218
                 + t ++++  ++  + +rksn++r+++     ++++++n
  MMETSP0890-20130614|4258_1 433 EATPTKNNTISRTASFSRKSNKKRPKSNGspsTKKKQKN 471
                 567788888999999999999999999986633333333 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  20.8     0.002       2.3      92     175 ..     122     207 ..     106     267 .. 0.56
   2 ?    6.3   1.0     0.004       4.6      84     177 ..     349     474 ..     328     494 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.002
   PF05285.7  92 eseedddee...WdvdsdeededeDeegewvdvesdeeeessDsedeeeeseeeeeeeesekkkkeesdeekseeeeeeaaeeeeee 175
                 +s+ ++++e   + +d+d+e+e+++e ++  + esd+e+ ++D+e e++e+ ee+ e+es+ + ++++d+ek+++ee e++++ e++
  MMETSP0890-20130614|4258_1 122 SSNVESSQEetkQSEDQDDEKESDEEIEQDHEKESDAEI-EQDHEKESDEKIEEDREKESDAEIEQDQDREKESDEEIEQDQSDEND 207
                 222222222111111333444333334444444444444.45555555544445555555555555555555555555555444443 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.004
   PF05285.7  84 kk.eeeegleseedddeeWdvdsdeededeDeegewvdvesdeeee....................................ssDsedeeeeseeeeeeeesekkkkeesdeekseeeeeeaaeeeeeeak 177
                 +  ++e  le+++ +de+   ++d +ded+D e   v+ ++d  ++                                    +  +e+e +  ++++ +  +++ +k++ +++ +++ + ++++++++++k
  MMETSP0890-20130614|4258_1 349 DVlRSEPPLENDAMSDED---KTDVMDEDDD-EARSVSANDDTCYKckrygnlilcdkcqrsyhyrcaglktiptekvwfcpICHEEEEATPTKNNTISRTASFSRKSN-KKRPKSNGSPSTKKKQKNDHK 474
                 223333333444444443...2445554444.57777777774444677888999999999999999999999999999998666666666555544444444444443.333333333444444444444 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.4    0.0002      0.23     229     309 ..     118     200 ..      97     276 .. 0.60
   2 ?   -2.2   0.2      0.46   5.3e+02     289     290 ..     392     438 ..     298     484 .. 0.44

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0002
   PF05758.7 229 l....seieerseeekkkeieaesekkrakqeqeeeeeedssla.seekedkdkideqeekkveekkekesilkkkisqekkklei 309
                 +    s++e ++ee k+ e + ++++++++ eq++e+e+d ++  ++eke  +ki+e++ek+ + + e+ + ++k+   +++++e+
  MMETSP0890-20130614|4258_1 118 ApkmsSNVESSQEETKQSEDQDDEKESDEEIEQDHEKESDAEIEqDHEKESDEKIEEDREKESDAEIEQDQDREKE---SDEEIEQ 200
                 0333333444444444444444444444444444444444555545555555666665555444332222222222...1222222 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.46
   PF05758.7 289 k.............................................k 290
                 k                                             k
  MMETSP0890-20130614|4258_1 392 KrygnlilcdkcqrsyhyrcaglktiptekvwfcpicheeeeatptK 438
                 13333333333333333333333333333333333333322222220 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.4    0.0019       2.2     259     325 ..     125     195 ..     101     296 .. 0.48
   2 ?    1.5   0.2     0.069        78     281     330 ..     350     461 ..     321     531 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0019
  PF04499.10 259 lqkaleeeeeseeeaedtsadae.qdsaedkreleasnasedseeededdeeseeseesees...aaelte 325
                 ++  +ee+++se++ +++++d+e ++++e+++++e+++++e++++e+ +++ ++es+ + e+    +++++
  MMETSP0890-20130614|4258_1 125 VESSQEETKQSEDQDDEKESDEEiEQDHEKESDAEIEQDHEKESDEKIEEDREKESDAEIEQdqdREKESD 195
                 22222222222222222222222344444444444433333322222222222222222222111111111 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.069
  PF04499.10 281 e........qdsaedkreleasnased............................................................seeededdeeseeseeseesaaelteeklrs 330
                 +        +d+ +d+ +++++++++d                                                            +      ++++++ + s +++++++++k + 
  MMETSP0890-20130614|4258_1 350 VlrseppleNDAMSDEDKTDVMDEDDDearsvsanddtcykckrygnlilcdkcqrsyhyrcaglktiptekvwfcpicheeeeatpT------KNNTISRTASFSRKSNKKRPKSNG 461
                 1332344433333344444444433334455555555677888888888888888888888888888888888888888753333331......333333333333334444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1739  (0.127194); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                       145  (0.0106056); expected 13.7 (0.001)
Passed Fwd filter:                        70  (0.00511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 2.04u 0.45s 00:00:02.49 Elapsed: 00:00:01.25
# Mc/sec: 1111.91
//
Query:       MMETSP0890-20130614|4276_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-19   69.2  16.2    0.00034   20.2   0.4    5.2  5  PF09038.5  Tumour suppressor p53-binding protein-1 Tudor
    4.3e-11   42.4   0.0        1.1    8.6   0.0    5.0  5  PF07039.6  SGF29 tudor-like domain
    2.7e-07   29.9  17.1      0.097   12.2   0.4    5.1  5  PF09465.5  Lamin-B receptor of TUDOR domain
    0.00022   21.2   6.1       0.98    9.5   0.0    5.0  5  PF05641.7  Agenet domain
     0.0013   18.1   5.0          1    8.9   0.1    4.1  4  PF13275.1  S4 domain
      0.005   17.3   9.3        2.8    8.4   0.7    4.4  3  PF00630.14 Filamin/ABP280 repeat
  ------ inclusion threshold ------
       0.01   15.4   0.0         23    4.7   0.0    4.0  5  PF04014.13 Antidote-toxin recognition MazE
       0.49    9.8   9.2        4.7    6.6   0.7    4.0  5  PF07202.8  T-complex protein 10 C-terminus
       0.64    8.9   2.2         52    2.6   0.0    3.7  5  PF09823.4  Domain of unknown function (DUF2357)


Domain annotation for each model (and alignments):
>> PF09038.5  Tumour suppressor p53-binding protein-1 Tudor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05     0.026       8      58 ..      26      77 ..      22      88 .. 0.84
   2 !   20.2   0.4   2.3e-07   0.00034       6      43 ..      89     126 ..      83     136 .. 0.86
   3 !    9.7   0.0   0.00043      0.65       5      41 ..     156     192 ..     152     209 .. 0.85
   4 !   15.3   0.0   7.7e-06     0.012       8      58 ..     224     275 ..     219     286 .. 0.87
   5 !   18.1   0.4   1.1e-06    0.0016       6      40 ..     287     321 .]     281     321 .] 0.93

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
                --EEE-ST---BB---EEEE-----EEEE----.-EEEE----EE--SS--T CS
   PF09038.5  8 rvvakwssngyfysgkitkdagegkykllfddg.yecdvlgkdillcdpipl 58
                ++ a++     +y g+i +d  +g + + +ddg  e  vl   i   d  p+
  MMETSP0890-20130614|4276_1 26 KIEARYRGRSKYYPGRIARDRRDGTFDIDYDDGeKETRVLEEYIRAIDDEPV 77
                67789999999*********************94478888888877776665 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 2.3e-07
                 ----EEE-ST---BB---EEEE-----EEEE-----EE CS
   PF09038.5   6 glrvvakwssngyfysgkitkdagegkykllfddgyec 43 
                 g +v a++  +  +ysg+i++d g+g y + +ddg   
  MMETSP0890-20130614|4276_1  89 GDKVEARYRGKSKYYSGQIIRDRGDGTYDIEYDDGDRE 126
                 568899999*************************9754 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00043
                 -----EEE-ST---BB---EEEE-----EEEE----- CS
   PF09038.5   5 vglrvvakwssngyfysgkitkdagegkykllfddgy 41 
                 vg  + a++     +y g+i +   +g y + +ddg 
  MMETSP0890-20130614|4276_1 156 VGDTIEARYRGRSRYYPGRISRVHADGTYDIDYDDGE 192
                 56677899999999*********************95 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 7.7e-06
                 --EEE-ST---BB---EEEE-----EEEE----.-EEEE----EE--SS--T CS
   PF09038.5   8 rvvakwssngyfysgkitkdagegkykllfddg.yecdvlgkdillcdpipl 58 
                 ++ a++     +y g+i +d  +g + + +ddg  e  vl   i + d  p+
  MMETSP0890-20130614|4276_1 224 KIEARYRGRSKYYPGRIARDRRDGTFDIDYDDGeKETRVLEEYIRVIDDEPV 275
                 67789999999*********************94588999999999988776 PP

  == domain 5    score: 18.1 bits;  conditional E-value: 1.1e-06
                 ----EEE-ST---BB---EEEE-----EEEE---- CS
   PF09038.5   6 glrvvakwssngyfysgkitkdagegkykllfddg 40 
                 g +v a++  +  +ysg+i++d g+g y + +ddg
  MMETSP0890-20130614|4276_1 287 GDKVEARYRGKSKYYSGQIIRDRGDGTYDIEYDDG 321
                 568899999*************************8 PP

>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0013         2      64     124 ..      13      68 ..       7      74 .. 0.85
   2 !    8.6   0.0   0.00076       1.1      70     119 ..      84     128 ..      76     135 .. 0.84
   3 !    7.5   0.0    0.0017       2.6      73     117 ..     155     197 ..     145     209 .. 0.82
   4 !    7.8   0.0    0.0013         2      64     123 ..     211     265 ..     202     273 .. 0.85
   5 ?    3.9   0.0     0.022        33      70     110 ..     282     320 ..     272     321 .] 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0013
   PF07039.6  64 ketsklaefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedkereVkkry 124
                 k++s +a+  +g k+ A+Y   + +Y++ + +   ++++++++ ++d e+e    +V ++y
  MMETSP0890-20130614|4276_1  13 KSPSRSAQLCEGDKIEARYRGRSKYYPGRIARD--RRDGTFDIDYDDGEKET---RVLEEY 68 
                 66788899999*******************998..9***********99764...565555 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00076
   PF07039.6  70 aefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedkere 119
                 ++  +g kV A+Y   + +Y + +++   + +++y++e++d ++e+   +
  MMETSP0890-20130614|4276_1  84 NKLREGDKVEARYRGKSKYYSGQIIRD--RGDGTYDIEYDDGDREQ---R 128
                 5678899*****************999..99**********99776...3 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0017
   PF07039.6  73 pkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedke 117
                 + g ++ A+Y   + +Y++ ++++  +++++y++ ++d e+e + 
  MMETSP0890-20130614|4276_1 155 QVGDTIEARYRGRSRYYPGRISRV--HADGTYDIDYDDGEKERGV 197
                 567788899999************..9************988764 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.0013
   PF07039.6  64 ketsklaefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedkereVkkr 123
                 k++s +a+  +g k+ A+Y   + +Y++ + +   ++++++++ ++d e+e    +V ++
  MMETSP0890-20130614|4276_1 211 KSPSRSAQLCEGDKIEARYRGRSKYYPGRIARD--RRDGTFDIDYDDGEKET---RVLEE 265
                 6678889999********************998..9***********99775...45444 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.022
   PF07039.6  70 aefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFed 110
                 ++  +g kV A+Y   + +Y + +++   + +++y++e++d
  MMETSP0890-20130614|4276_1 282 NKLREGDKVEARYRGKSKYYSGQIIRD--RGDGTYDIEYDD 320
                 5678899*****************998..999******998 PP

>> PF09465.5  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.019        29       6      44 ..      21      58 ..      15      69 .. 0.85
   2 !   12.2   0.4   6.4e-05     0.097       4      44 ..      84     123 ..      81     133 .. 0.92
   3 !    7.0   0.1    0.0026         4       7      44 ..     155     191 ..     151     200 .. 0.87
   4 ?    4.2   0.0     0.019        29       6      44 ..     219     256 ..     213     267 .. 0.85
   5 !   10.9   0.6   0.00016      0.24       4      44 ..     282     321 .]     279     321 .] 0.93

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.019
   PF09465.5  6 yadGevvmGRWPGssLYYevkvlsfdsksqlYtviYkDG 44
                  +G+ +  R+ G s YY  ++   d ++  + + Y DG
  MMETSP0890-20130614|4276_1 21 LCEGDKIEARYRGRSKYYPGRIA-RDRRDGTFDIDYDDG 58
                568999************99975.699999999999999 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6.4e-05
   PF09465.5   4 rkyadGevvmGRWPGssLYYevkvlsfdsksqlYtviYkDG 44 
                 +k ++G+ v  R+ G s YY  +++  d  +  Y + Y DG
  MMETSP0890-20130614|4276_1  84 NKLREGDKVEARYRGKSKYYSGQIIR-DRGDGTYDIEYDDG 123
                 7899********************96.99999********9 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0026
   PF09465.5   7 adGevvmGRWPGssLYYevkvlsfdsksqlYtviYkDG 44 
                 + G+++  R+ G s YY  ++ s  +++  Y + Y DG
  MMETSP0890-20130614|4276_1 155 QVGDTIEARYRGRSRYYPGRI-SRVHADGTYDIDYDDG 191
                 78****************998.5556788999999999 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.019
   PF09465.5   6 yadGevvmGRWPGssLYYevkvlsfdsksqlYtviYkDG 44 
                   +G+ +  R+ G s YY  ++   d ++  + + Y DG
  MMETSP0890-20130614|4276_1 219 LCEGDKIEARYRGRSKYYPGRIA-RDRRDGTFDIDYDDG 256
                 568999************99975.699999999999999 PP

  == domain 5    score: 10.9 bits;  conditional E-value: 0.00016
   PF09465.5   4 rkyadGevvmGRWPGssLYYevkvlsfdsksqlYtviYkDG 44 
                 +k ++G+ v  R+ G s YY  +++  d  +  Y + Y DG
  MMETSP0890-20130614|4276_1 282 NKLREGDKVEARYRGKSKYYSGQIIR-DRGDGTYDIEYDDG 321
                 7899********************96.999999*****998 PP

>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.3   4.6e+02       4      47 ..      24      64 ..      22      80 .. 0.74
   2 !    9.5   0.0   0.00065      0.98       2      62 ..      87     144 ..      86     150 .. 0.80
   3 ?    3.6   0.0     0.044        67      17      58 ..     167     205 ..     154     215 .. 0.74
   4 ?    1.4   0.0      0.22   3.3e+02       4      49 ..     222     264 ..     220     279 .. 0.72
   5 ?    4.6   0.0     0.021        32       2      40 ..     285     320 ..     284     321 .] 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.3
   PF05641.7  4 GseVEVsseeeglrgaWfrAkVlkelkeskykveyddlsledge 47
                G+++E + +    r  ++++ +    ++ ++ + ydd ++e++ 
  MMETSP0890-20130614|4276_1 24 GDKIEARYRG---RSKYYPGRIARDRRDGTFDIDYDDGEKETRV 64
                6666666544...6678999999999999999999998888765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00065
   PF05641.7   2 skGseVEVsseeeglrgaWfrAkVlkelkeskykveyddlsledgeskllketvdlrrlRP 62 
                 ++G++VE + +    +  ++++ ++   ++ +y +eydd + e++  +   + +  ++ RP
  MMETSP0890-20130614|4276_1  87 REGDKVEARYRG---KSKYYSGQIIRDRGDGTYDIEYDDGDREQRVVEDFIKPLGGSSSRP 144
                 689999988866...778***********************99998776666556666666 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.044
   PF05641.7  17 rgaWfrAkVlkelkeskykveyddlsledgeskllketvdlr 58 
                 r  ++++ +  ++ + +y + ydd ++e g     +e+++ +
  MMETSP0890-20130614|4276_1 167 RSRYYPGRISRVHADGTYDIDYDDGEKERGV---IEEYIKVK 205
                 666999****************999998776...45555555 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.22
   PF05641.7   4 GseVEVsseeeglrgaWfrAkVlkelkeskykveyddlsledgesk 49 
                 G+++E + +    r  ++++ +    ++ ++ + ydd ++e++  +
  MMETSP0890-20130614|4276_1 222 GDKIEARYRG---RSKYYPGRIARDRRDGTFDIDYDDGEKETRVLE 264
                 6666666644...677899999999999999999999999887743 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.021
   PF05641.7   2 skGseVEVsseeeglrgaWfrAkVlkelkeskykveydd 40 
                 ++G++VE + +    +  ++++ ++   ++ +y +eydd
  MMETSP0890-20130614|4276_1 285 REGDKVEARYRG---KSKYYSGQIIRDRGDGTYDIEYDD 320
                 689999988866...7789******************98 PP

>> PF13275.1  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.5   2.3e+03      45      57 ..      17      29 ..      13      34 .. 0.85
   2 !    8.8   0.1   0.00072       1.1      43      57 ..      80      94 ..      64     113 .. 0.88
   3 ?   -1.3   0.0         1   1.5e+03      44      57 ..     214     227 ..     196     233 .. 0.82
   4 !    8.9   0.1   0.00066         1      43      57 ..     278     292 ..     255     311 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.5
   PF13275.1 45 RgkKlraGdvVei 57
                R ++l +Gd +e 
  MMETSP0890-20130614|4276_1 17 RSAQLCEGDKIEA 29
                8899*****9985 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00072
   PF13275.1 43 trRgkKlraGdvVei 57
                 rRg Klr+Gd Ve 
  MMETSP0890-20130614|4276_1 80 PRRGNKLREGDKVEA 94
                59***********97 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1
   PF13275.1  44 rRgkKlraGdvVei 57 
                  R ++l +Gd +e 
  MMETSP0890-20130614|4276_1 214 SRSAQLCEGDKIEA 227
                 58899999999985 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.00066
   PF13275.1  43 trRgkKlraGdvVei 57 
                  rRg Klr+Gd Ve 
  MMETSP0890-20130614|4276_1 278 PRRGNKLREGDKVEA 292
                 59***********97 PP

>> PF00630.14  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.5    0.0023       3.5      41      77 ..      89     121 ..       4     129 .. 0.66
   2 ?    1.1   0.0      0.37   5.7e+02      67      98 ..     179     212 ..     152     215 .. 0.75
   3 !    8.4   0.7    0.0019       2.8      24      76 ..     248     318 ..     189     320 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0023
                 ---EEEEEE----......B--EEE------EEEEE- CS
  PF00630.14  41 gdefqvritspsgaeekklvkanvsdnedgtytvsYt 77 
                 gd+++ r  ++s+ ++     + ++d++dgty+++Y 
  MMETSP0890-20130614|4276_1  89 GDKVEARYRGKSKYYS----GQIIRDRGDGTYDIEYD 121
                 2333333333322222....224************95 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.37
                 -----EEEEE-----..--EEEEEEE---B-CT- CS
  PF00630.14  67 nedgtytvsYtpeep..gkyrvsvkldgkhiggs 98 
                 + dgty++ Y   e+  g ++ ++k+++    +s
  MMETSP0890-20130614|4276_1 179 HADGTYDIDYDDGEKerGVIEEYIKVKNDLRSKS 212
                 569*******876653355666666666555555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0019
                 EEEEE-BC----B-------EEEEE......E----...............................B--EEE------EEEEE CS
  PF00630.14  24 tFtvdardakgekvesggdefqvri......tspsgaeek.........................klvkanvsdnedgtytvsY 76 
                 tF +d  d ++e++     e+ +r+             ++                         +     ++d++dgty+++Y
  MMETSP0890-20130614|4276_1 248 TFDIDYDDGEKETRV---LEEYIRViddepvR------SPrrgnklregdkvearyrgkskyysgQ----IIRDRGDGTYDIEY 318
                 555555555444332...23445553333331......1233333444444444444433322212....5************9 PP

>> PF04014.13  Antidote-toxin recognition MazE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3   5.1e+03      23      33 ..      23      33 ..      23      40 .. 0.81
   2 ?    4.7   0.0     0.015        23      17      34 ..      82      99 ..      81     102 .. 0.81
   3 ?   -0.4   0.0      0.57   8.7e+02      21      33 ..     154     166 ..     152     174 .. 0.82
   4 ?   -2.8   0.0       3.3   5.1e+03      23      33 ..     221     231 ..     221     238 .. 0.81
   5 ?    4.7   0.0     0.015        23      17      34 ..     280     297 ..     279     300 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.3
  PF04014.13 23 eGdevelevdg 33
                eGd++e ++ g
  MMETSP0890-20130614|4276_1 23 EGDKIEARYRG 33
                79999998876 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
  PF04014.13 17 felgireGdevelevdgd 34
                + + +reGd+ve ++ g+
  MMETSP0890-20130614|4276_1 82 RGNKLREGDKVEARYRGK 99
                56679*******999874 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.57
  PF04014.13  21 ireGdevelevdg 33 
                 +++Gd++e ++ g
  MMETSP0890-20130614|4276_1 154 LQVGDTIEARYRG 166
                 678*****99876 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 3.3
  PF04014.13  23 eGdevelevdg 33 
                 eGd++e ++ g
  MMETSP0890-20130614|4276_1 221 EGDKIEARYRG 231
                 79999998876 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.015
  PF04014.13  17 felgireGdevelevdgd 34 
                 + + +reGd+ve ++ g+
  MMETSP0890-20130614|4276_1 280 RGNKLREGDKVEARYRGK 297
                 56679*******999874 PP

>> PF07202.8  T-complex protein 10 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.024        36     143     170 ..      47      74 ..      20      78 .. 0.80
   2 ?    0.9   0.0      0.17   2.6e+02     106     131 ..     101     126 ..      86     138 .. 0.65
   3 ?    1.9   0.1     0.082   1.2e+02     114     156 ..     177     193 ..     153     209 .. 0.56
   4 ?    6.6   0.7    0.0031       4.7     118     171 ..     221     273 ..     168     275 .. 0.60
   5 ?   -3.0   0.0       2.6     4e+03      73      91 ..     302     320 ..     296     321 .] 0.60

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.024
   PF07202.8 143 PdGtvktvyadGrqetryssGrvrvkdk 170
                  dGt  + y dG++etr  +  +r  d+
  MMETSP0890-20130614|4276_1  47 RDGTFDIDYDDGEKETRVLEEYIRAIDD 74 
                 5899999999999999988888887665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.17
   PF07202.8 106 vypDGtvvrvkrdgdkiielsnGqke 131
                 +y  G ++r + dg+  ie+++G++e
  MMETSP0890-20130614|4276_1 101 KYYSGQIIRDRGDGTYDIEYDDGDRE 126
                 55555556666666666666666555 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.082
   PF07202.8 114 rvkrdgdkiielsnGqkeihtkrykrreyPdGtvktvyadGrq 156
                 r                           + dGt  + y dG++
  MMETSP0890-20130614|4276_1 177 R--------------------------VHADGTYDIDYDDGEK 193
                 2..........................2223333333333333 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0031
   PF07202.8 118 dgdkiielsnGqkeihtkrykrreyPdGtvktvyadGrqetryssGrvrvkdkd 171
                 +gdki     G+ +    r+ r    dGt  + y dG++etr  +  +rv d++
  MMETSP0890-20130614|4276_1 221 EGDKIEARYRGRSKYYPGRIAR-DRRDGTFDIDYDDGEKETRVLEEYIRVIDDE 273
                 4444444444444444444433.3469****************99999998876 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 2.6
   PF07202.8  73 nkqtekrfkDGskeilfpd 91 
                 ++q+ + + DG+ +i ++d
  MMETSP0890-20130614|4276_1 302 SGQIIRDRGDGTYDIEYDD 320
                 4555556666666666665 PP

>> PF09823.4  Domain of unknown function (DUF2357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.05        76     127     162 ..      17      52 ..       1      54 [. 0.65
   2 ?    0.1   0.0      0.21   3.2e+02     136     162 ..      78     117 ..      57     119 .. 0.64
   3 ?   -3.0   0.0       1.7   2.7e+03     135     162 ..     158     185 ..     144     186 .. 0.70
   4 ?    2.6   0.0     0.034        52     127     162 ..     209     250 ..     192     252 .. 0.66
   5 ?   -0.6   0.0      0.33     5e+02     126     162 ..     279     315 ..     258     317 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.05
   PF09823.4 127 lkelakeperlqeve.....eakkkylprrvlqekkeltvD 162
                 +++ + e+      +     +++ ky+p r+ ++++  t+D
  MMETSP0890-20130614|4276_1  17 RSAQLCEGD-----KiearyRGRSKYYPGRIARDRRDGTFD 52 
                 222222334.....14445599******************9 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.21
   PF09823.4 136 rlqeve.............eakkkylprrvlqekkeltvD 162
                 r  +               ++k ky+  ++++++   t+D
  MMETSP0890-20130614|4276_1  78 RSPRRGnklregdkvearyRGKSKYYSGQIIRDRGDGTYD 117
                 3333323333444455555999999999999999999999 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.7
   PF09823.4 135 erlqeveeakkkylprrvlqekkeltvD 162
                   +    +++ +y+p r+ + +   t+D
  MMETSP0890-20130614|4276_1 158 DTIEARYRGRSRYYPGRISRVHADGTYD 185
                 4444444788899999999999999998 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.034
   PF09823.4 127 lkelakeperlqeve......eakkkylprrvlqekkeltvD 162
                 +++  +++++l e        +++ ky+p r+ ++++  t+D
  MMETSP0890-20130614|4276_1 209 RSKSPSRSAQLCEGDkiearyRGRSKYYPGRIARDRRDGTFD 250
                 3333333333333334555669*******************9 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 0.33
   PF09823.4 126 vlkelakeperlqeveeakkkylprrvlqekkeltvD 162
                 ++   ++e+ ++    ++k ky+  ++++++   t+D
  MMETSP0890-20130614|4276_1 279 RRGNKLREGDKVEARYRGKSKYYSGQIIRDRGDGTYD 315
                 3334444445555555999999999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.70
# Mc/sec: 1098.90
//
Query:       MMETSP0890-20130614|4279_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.74
# Mc/sec: 165.15
//
Query:       MMETSP0890-20130614|4272_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-121  405.8   5.7   2.4e-121  405.4   4.0    1.1  1  PF00890.19 FAD binding domain
    1.7e-45  153.8   0.2    2.5e-45  153.3   0.2    1.2  1  PF02910.15 Fumarate reductase flavoprotein C-term
    2.6e-06   27.3   0.0     0.0019   17.9   0.6    2.8  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    3.4e-05   22.9   0.2      0.032   13.2   0.0    2.4  2  PF01946.12 Thi4 family
    6.5e-05   21.8   1.6     0.0032   16.2   1.7    2.2  2  PF01134.17 Glucose inhibited division protein A
    0.00055   18.8   1.5     0.0012   17.7   0.1    2.1  2  PF01266.19 FAD dependent oxidoreductase
     0.0026   16.7   0.2     0.0046   15.9   0.2    1.4  1  PF01494.14 FAD binding domain
  ------ inclusion threshold ------
      0.014   14.4   1.4      0.032   13.2   1.0    1.6  1  PF12831.2  FAD dependent oxidoreductase
       0.28    9.4   2.5       0.28    9.4   0.7    1.8  2  PF03486.9  HI0933-like protein


Domain annotation for each model (and alignments):
>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.4   4.0  1.6e-124  2.4e-121       1     421 []      38     441 ..      38     441 .. 0.98

  Alignments for each domain:
  == domain 1    score: 405.4 bits;  conditional E-value: 1.6e-124
                 SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-----B---....GGGSS.S-HHHHHHHHHH-------HHHHHHHHCCHHHHHHHHHC------BGC---B-EE------S-........-EE-.STT-......---HHHHHHHHHHHC-TTEEEE-SEEEEE--BG.--BB---EEEETTT-SEEEEEES.EEEE-----GG.............GSSSBSS-TT------HHHHC----EE-..TT-EEEECEEES....-TT-B--GGG-----EEE-----B-H.......GGGS-HHHHHHHHH.HHHHH---....-.-EEEE-TT.S-HHHHCCH-HHHHHHHHHT--......--TTTS-EE.......EEEEEEEE----B-------.................S-B--EE-----B---------TTSHH CS
  PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsqGgidavlspeqkkagikdspdlhrtdtlkaldeladqplveafveaapeavdeleelgvpfsrtedgpvdlrelGglsat........rtlhdaadarretlvtghallarllesareagkvdfqerhradeLive.dgrvtGvvvenprsgrevrirakaavvlatgGfgrdrrallkellgaaaeaettnapantGdgialalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrFm.......nelasrdvvsrailekeiaeggs....eanvyldadhgldaealeatleaineeaengldkdfgrgidpadrpipgpfyavkvvpaqhytmgGvrtdenarv...........ldadgqpipGLYAaGevagggvhganrlgGnsl 421
                 Dv V+G+G+AGl+AA+  aeag k+++v+k ++t+++t+++qGgi+a+l +++    +kd++ +h +dt+k++d+l+dq+++++++++ap av ele++g+pfsrte+g++++r +Gg+s +        r+++ aad+      tgha+l++l+ + ++   ++++ +++a++Li++ dg ++Gv + ++++g+++ri+a  ++vlatgG+gr             a++++t+a+++tGdg+a+alrag+a +d   e+vqfhPt+++    g+g+Lite++rgeGgil++++G+rFm       ++lasrdvvsra++  ei++g++    +++++l +dh l++e l+++l++i e+a+ +++      +d +++pip       v+p++hy+mgG++t+++++v           + +++ ++pGL+AaGe+a+++vhganrlg+nsl
  MMETSP0890-20130614|4272_1  38 DVCVVGAGGAGLRAAMGSAEAGFKTVCVTKLFPTRSHTVAAQGGINAAL-GNM----TKDDWRWHSYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDygkggqafRCAC-AADR------TGHAMLHTLYGRSLAFD-TTYLIEYFALDLIMDdDGACVGVLALCMEDGSLHRIHAA-NTVLATGGYGR-------------AYFSCTSAHTCTGDGNAMALRAGLAAQD--PEFVQFHPTGIY----GAGCLITEGCRGEGGILRNAQGERFMeryapsaKDLASRDVVSRAMT-LEIQQGRGvgkdKDHIFLHLDH-LPPELLAERLPGISETAQIFAG------VDVTKEPIP-------VLPTVHYNMGGIPTNYHGEVirqikdeatgeIIDHDAVVPGLFAAGEAACASVHGANRLGANSL 441
                 99***********************************************.888....6799**********************************************************************999.****......****************7.**************6377*********************.**********9.............****************************..************....***********************************************.**********************.**********************......*********.......*************************9999988889999************************98 PP

>> PF02910.15  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.2   1.6e-48   2.5e-45       1     129 []     496     631 .]     496     631 .] 0.98

  Alignments for each domain:
  == domain 1    score: 153.3 bits;  conditional E-value: 1.6e-48
                 HHHHHHHHHHH----B---HHHHHHHHHHHHHHHHTT-------SSS-HHHHHHHHHHHHHHHHHHHH----S--S------BTTS-SEETTT-SEEEEEE--STT.S-EEEEEE--GGG-......SS-S----- CS
  PF02910.15   1 rkeLqeiMqenagvfRteesLeealkkiaelkerlkkvkvkdkskvlntdlvealelenllelAeaiitaAlaRkESRGaHareDyperdDenwlkhtlaeldeee.kvkleyepvvittl......kippkersy 129
                 r+++q++Mq++a+v+Rt+esL+++ +ki+++++ +++v +kd+s ++ntdlve+lel+nll +A ++++aA++RkESRGaHareD++ rdD+nw+kht++++d e+ +v+++y+p+   +l      ++pp +r+y
  MMETSP0890-20130614|4272_1 496 RHSMQKVMQDHAAVYRTQESLAQGAQKIDQVCAAFADVGIKDRSLIWNTDLVETLELRNLLPNAATTVHAAEKRKESRGAHAREDFTTRDDQNWMKHTVCYVDPESfQVQVDYRPIYYYSLdenefsTVPPVARVY 631
                 679*******************************************************************************************************99**********999999999999999988 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.6   1.3e-06    0.0019       1      35 [.      38      72 ..      38      90 .. 0.91
   2 !    5.3   0.0    0.0093        14     102     196 ..     217     426 ..     200     429 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-06
                SEEEE----HHHHHHHHHHHTTSEEEEECSSSSST CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9  1 dvviiGgGpaGlsaakdlaqkglkvaliekeggtc 35
                dv+++G+G aGl+aa   a +g+k+++++k+++t 
  MMETSP0890-20130614|4272_1 38 DVCVVGAGGAGLRAAMGSAEAGFKTVCVTKLFPTR 72
                79**************************9988764 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0093
                 ETEEEEEEESEEEE----B.----TGCCHTEEEC.SSHHHHHHHHHHCST.......TTEEEEE-...................................................................................-GGGCHHSS--BES............SSSBBE-TTSBC.................SSTTEEE---TC CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxx...................................................................................xxxxxxxxxxxxxx............xxxxxxxxxxxx.................xxxxxxxxxxxx RF
   PF07992.9 102 kgkgrdikydklviAtGar.prtlgipgvevailargvedsdeilellek.......pkkvvvvG...................................................................................tkllaekagveldp............rggivVdeylrt.................svpgiyaiGDva 196
                 +g  ++i++ + v+AtG++   ++ +  +   + + g +++ +++  l+        ++   + G                                                                                   t+++   agv++++             ggi ++ + ++                  vpg +a+G +a
  MMETSP0890-20130614|4272_1 217 DGSLHRIHAANTVLATGGYgRAYFSCTSA---HTCTGDGNAMALRAGLAAqdpefvqFHPTGIYGagclitegcrgeggilrnaqgerfmeryapsakdlasrdvvsramtleiqqgrgvgkdkdhiflhldhlppellaerlpgiseTAQI--FAGVDVTKepipvlptvhynMGGIPTNYHGEVirqikdeatgeiidhdaVVPGLFAAGEAA 426
                 567789999999****9985556666654...222333333333333333333333322556666778888888888888888888888888888888888888888888888888888888888888888888888888888886554444..6777776677777777777777788888887777788888888887766688888888876 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.1e-05     0.032      17      46 ..      36      65 ..      19      84 .. 0.81
   2 !    7.3   0.0    0.0013         2     199     228 ..     409     438 ..     396     439 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
                EEEEEEE-------HHHHHHHTSTS-EEEE CS
  PF01946.12 17 esDvvivGaGssGltaayylakkdlkvail 46
                + Dv +vGaG +Gl aa   a++++k++ +
  MMETSP0890-20130614|4272_1 36 DFDVCVVGAGGAGLRAAMGSAEAGFKTVCV 65
                579***********************8876 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0013
                 HHHH-EE-----EE---HH.HHH---EE--- CS
  PF01946.12 199 ivkntrevvpglyvaGmev.aevdganRmGp 228
                 i+    +vvpgl++aG ++ a v+ganR+G+
  MMETSP0890-20130614|4272_1 409 IID-HDAVVPGLFAAGEAAcASVHGANRLGA 438
                 443.4689********7652789******97 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.7   2.1e-06    0.0032       1      31 [.      38      68 ..      38      91 .. 0.82
   2 ?    2.4   0.0     0.033        51     131     167 ..     213     251 ..     154     278 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.1e-06
                SEEEE-------HHHHHHHH----EEEEES- CS
  PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                dv V+G+G AG+ AA+ +a++G+k++ +t+ 
  MMETSP0890-20130614|4272_1 38 DVCVVGAGGAGLRAAMGSAEAGFKTVCVTKL 68
                79***********************998554 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.033
                 -EE----..B-EESEEEE-----B---EE----EE---- CS
  PF01134.17 131 vvtedge..tikakavviatGtflkgkihigekelsaGr 167
                 +++edg+   i+a ++v+atG + ++   + + ++ +G 
  MMETSP0890-20130614|4272_1 213 LCMEDGSlhRIHAANTVLATGGYGRAYFSCTSAHTCTGD 251
                 34566652267888*********9999998877766665 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     8e-07    0.0012       1      86 [.      38     142 ..      38     149 .. 0.89
   2 ?   -0.3   0.1      0.23   3.5e+02     187     205 ..     217     238 ..     192     423 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8e-07
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTSSCGGGS-EEE-SST.....................CHCSCHHHHHHHHHHHHHHHHHHHHTSSTSBBCCEHC CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdiasgaSgrngglihagl.....................lkerdprllrlalesldllrelaaetgidvdfrrtgv 86 
                 dv+++G+G +Gl +A   a++g+k++ + k  +    + +++g i a l                     l ++d ++  +++e+ +   el + +g+++   + g+
  MMETSP0890-20130614|4272_1  38 DVCVVGAGGAGLRAAMGSAEAGFKTVCVTKLFPTRSHTVAAQGGINAALgnmtkddwrwhsydtvkgsdwLGDQD-AIHYMCREAPRAVLEL-ESYGLPFSRTEEGK 142
                 8******************************999999*999999999999*999999999999999999754555.8999999999999999.99999888555555 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
                 ES....EEEEEEEE----THHH CS
  PF01266.19 187 dg...siradkvvlAaGawssk 205
                 dg   +i+a   vlA+G + ++
  MMETSP0890-20130614|4272_1 217 DGslhRIHAANTVLATGGYGRA 238
                 4444356667777777776655 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2     3e-06    0.0046       2      39 ..      37      74 ..      36      84 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3e-06
                ECEEE--------HHHHHHHHH.HHEEEEESSSCCCH- CS
  PF01494.14  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekhsttvvl 39
                 dV++VGaG aGl +a+  +eaG ++v+v+k   t  +
  MMETSP0890-20130614|4272_1 37 FDVCVVGAGGAGLRAAMGSAEAGFKTVCVTKLFPTRSH 74
                69****************************98665554 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.0   2.1e-05     0.032       1      29 [.      38      66 ..      38      70 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
   PF12831.2  1 DvvVvGGgpaGvaAAiaAarlGakvlLve 29
                Dv+VvG+g aG+ AA+  a +G k++ v 
  MMETSP0890-20130614|4272_1 38 DVCVVGAGGAGLRAAMGSAEAGFKTVCVT 66
                9************************9886 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.7   0.00018      0.28       2      29 ..      38      65 ..      37      92 .. 0.84
   2 ?   -3.7   0.0       1.7   2.7e+03     152     165 ..     222     235 ..     218     239 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00018
   PF03486.9  2 dviviGgGaAGlmaAisaakrgakVlll 29
                dv v+G+G AGl aA+  a++g k++ +
  MMETSP0890-20130614|4272_1 38 DVCVVGAGGAGLRAAMGSAEAGFKTVCV 65
                89******************99887655 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.7
   PF03486.9 152 eleadklvlAtGGk 165
                 +++a+++vlAtGG 
  MMETSP0890-20130614|4272_1 222 RIHAANTVLATGGY 235
                 689999******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.99u 0.43s 00:00:01.42 Elapsed: 00:00:01.09
# Mc/sec: 1387.25
//
Query:       MMETSP0890-20130614|4290_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.7   2.2          2    8.2   0.0    3.8  4  PF00825.13 Ribonuclease P


Domain annotation for each model (and alignments):
>> PF00825.13  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.39   5.3e+03      51      72 ..      14      35 ..      11      44 .. 0.72
   2 ?    1.2   0.0     0.022     3e+02      54      76 ..      68      90 ..      62     100 .. 0.78
   3 ?    8.2   0.0   0.00015         2      53      75 ..     184     206 ..     178     215 .. 0.86
   4 ?    1.6   0.0     0.016   2.2e+02      64     106 ..     379     417 ..     377     420 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.39
  PF00825.13 51 kvgkrAvkRNriKRllReafrl 72
                 +++++v+ N i R +R ++ +
  MMETSP0890-20130614|4290_1 14 SNVQQSVQANVISREVRDLIWK 35
                5667789999999999987655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.022
  PF00825.13 54 krAvkRNriKRllReafrlnqde 76
                ++A +RN++ R+l +  ++ +++
  MMETSP0890-20130614|4290_1 68 QHALRRNQVSRQLLHYKKTERPD 90
                6799*******997776666655 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00015
  PF00825.13  53 gkrAvkRNriKRllReafrlnqd 75 
                  k Av+R  i R+ R++f +n++
  MMETSP0890-20130614|4290_1 184 NKMAVARSNIQRRFRSTFNENAT 206
                 678****************9976 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.016
  PF00825.13  64 RllReafrlnqdelpagldlvvvarksaaeasfaelekelekl 106
                 R+++e++ ++++ +    dl v + ++ ++a++++le++ +++
  MMETSP0890-20130614|4290_1 379 RRIHEVISKHKPTV----DLFVKTLPRSEDADMDSLESQATEM 417
                 88999999888876....5888888888899999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1078  (0.0788473); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.39s 00:00:01.31 Elapsed: 00:00:01.15
# Mc/sec: 1088.69
//
Query:       MMETSP0890-20130614|4282_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-31  105.4  17.5    7.8e-13   47.7   0.3    4.4  4  PF13414.1  TPR repeat
    5.1e-24   82.7   9.2    0.00027   20.2   0.0    6.4  6  PF00515.23 Tetratricopeptide repeat
    4.3e-18   63.6  14.8     0.0011   18.6   0.0    6.5  6  PF07719.12 Tetratricopeptide repeat
    7.3e-08   32.7   0.2    1.5e-07   31.8   0.2    1.5  1  PF04969.11 CS domain
    9.3e-08   32.4  24.9    0.00064   20.2   0.3    4.7  4  PF13432.1  Tetratricopeptide repeat
    7.9e-07   28.7  17.0      0.041   13.6   0.1    4.5  4  PF13371.1  Tetratricopeptide repeat
    6.5e-06   25.4   1.8       0.95    9.2   0.0    5.6  6  PF13181.1  Tetratricopeptide repeat
    0.00017   21.3  16.6       0.12   12.2   2.0    5.4  6  PF13424.1  Tetratricopeptide repeat
     0.0029   17.1  11.2         10    6.0   0.0    6.0  6  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.034   14.6  30.0        6.1    7.6   0.2    7.0  7  PF13428.1  Tetratricopeptide repeat
       0.47   10.6   5.4         10    6.5   0.1    3.3  3  PF13431.1  Tetratricopeptide repeat
       0.95    7.1   9.5        1.3    6.6   6.6    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        8.8    4.6   5.5         14    4.0   3.8    1.2  1  PF04791.11 LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.3   7.5e-16   7.8e-13       6      66 ..     296     355 ..     291     358 .. 0.94
   2 !   14.3   0.0   1.9e-05      0.02      37      68 ..     375     405 ..     366     408 .. 0.84
   3 !   39.8   2.6   2.2e-13   2.4e-10       2      67 ..     422     486 ..     421     488 .. 0.95
   4 !   11.1   0.1    0.0002      0.21      40      69 .]     517     545 ..     511     554 .. 0.68

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 7.5e-16
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 lk +G +++k+gd+  A  ay+ Ale+d++ + +++n+A++ l+lg  ++eA++d++  le
  MMETSP0890-20130614|4282_1 296 LKSKGDEFWKRGDFRSATNAYSAALEIDKEWPACLANRAACELRLG-LWDEAARDCDAGLE 355
                 799*******************************************.99*******98776 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.9e-05
   PF13414.1  37 aelyynlAlaylklgkdyeeAledyekAleld 68 
                 a+l +++A+a+  +g  ye+A++d+++A +++
  MMETSP0890-20130614|4282_1 375 AKLIARRAAAFCGKG-AYEAAITDFQRASQIS 405
                 567789999999999.8999999999997775 PP

  == domain 3    score: 39.8 bits;  conditional E-value: 2.2e-13
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 +A ++k  +  +f e ++ eA++ay++Al+ +p   ++++n+A+a l  + ++  A++d++ Al++
  MMETSP0890-20130614|4282_1 422 KANTAKLSADSFFLEEKFSEALQAYDQALSHEPAFVSALANRAAARLAVN-EFAGAVADCSAALKI 486
                 68889999****************************************98.6************97 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.0002
   PF13414.1  40 yynlAlaylklgkdyeeAledyekAleldP 69 
                 ++++++a+  lgk  +eA+ d++ A+ ++P
  MMETSP0890-20130614|4282_1 517 LARRGAALAGLGK-LHEAVNDFQAAHVINP 545
                 4566667777764.5666777766666655 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00013      0.14       4      32 ..     296     324 ..     293     325 .. 0.91
   2 !    9.6   0.1   0.00058      0.61       3      29 ..     329     355 ..     327     356 .. 0.91
   3 !   13.5   0.0   3.5e-05     0.037       4      32 ..     378     406 ..     375     408 .. 0.86
   4 !   15.0   0.1   1.2e-05     0.013      10      32 ..     432     454 ..     430     456 .. 0.89
   5 !   13.2   0.1   4.4e-05     0.046       2      34 .]     458     490 ..     457     490 .. 0.94
   6 !   20.2   0.0   2.6e-07   0.00027       3      34 .]     516     547 ..     515     547 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnP 32 
                 l+ +G  + k g++  A  +y+ ALe++ 
  MMETSP0890-20130614|4282_1 296 LKSKGDEFWKRGDFRSATNAYSAALEIDK 324
                 678999*********************95 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALe 29 
                 +l n++++ l+lg +deA  +++  Le
  MMETSP0890-20130614|4282_1 329 CLANRAACELRLGLWDEAARDCDAGLE 355
                 789*******************98876 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALelnP 32 
                   ++++a+  +g y+ A+ ++++A ++ +
  MMETSP0890-20130614|4282_1 378 IARRAAAFCGKGAYEAAITDFQRASQISE 406
                 5699********************88765 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 1.2e-05
                 HHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  10 aylklgkydeAleyyekALelnP 32 
                  ++  +k+ eAl++y++AL+++P
  MMETSP0890-20130614|4282_1 432 SFFLEEKFSEALQAYDQALSHEP 454
                 578999**************999 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                  al n+++a l  +++  A+++++ AL++ +n+
  MMETSP0890-20130614|4282_1 458 SALANRAAARLAVNEFAGAVADCSAALKIFEND 490
                 599**************************9886 PP

  == domain 6    score: 20.2 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPnn 34 
                 +l ++G+a+  lgk+ eA+ +++ A  +nPn+
  MMETSP0890-20130614|4282_1 516 TLARRGAALAGLGKLHEAVNDFQAAHVINPND 547
                 6899**************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00026      0.27       3      33 ..     295     325 ..     293     326 .. 0.88
   2 !    8.5   0.2    0.0017       1.8       2      30 ..     328     356 ..     327     360 .. 0.88
   3 !    9.6   0.1   0.00075      0.79       3      32 ..     377     406 ..     375     408 .. 0.86
   4 !   12.7   0.1     8e-05     0.084       8      33 ..     430     455 ..     427     456 .. 0.90
   5 !    8.7   0.1    0.0015       1.6       3      34 .]     459     490 ..     457     490 .. 0.94
   6 !   18.6   0.0     1e-06    0.0011       4      34 .]     517     547 ..     515     547 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +l   G+  +k+gd+  A +a+  Ale+d +
  MMETSP0890-20130614|4282_1 295 WLKSKGDEFWKRGDFRSATNAYSAALEIDKE 325
                 666789999*******************976 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  +l n++ + ++lg ++eA+++++  le 
  MMETSP0890-20130614|4282_1 328 ACLANRAACELRLGLWDEAARDCDAGLEA 356
                 5789******************9998885 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00075
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 +  +++ a   +g ye A+ +f++A ++  
  MMETSP0890-20130614|4282_1 377 LIARRAAAFCGKGAYEAAITDFQRASQISE 406
                 56789********************88865 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 8e-05
                 HHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   8 GlayyklgdyeeAleafekAleldPn 33 
                 +++ +   ++ eAl+a+++Al+++P 
  MMETSP0890-20130614|4282_1 430 ADSFFLEEKFSEALQAYDQALSHEPA 455
                 67788999***************995 PP

  == domain 5    score: 8.7 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 al n++ a ++ ++++ A++++  Al+++ n+
  MMETSP0890-20130614|4282_1 459 ALANRAAARLAVNEFAGAVADCSAALKIFEND 490
                 899*************************9986 PP

  == domain 6    score: 18.6 bits;  conditional E-value: 1e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 l ++G a++ lg++ eA+++f+ A  ++Pn+
  MMETSP0890-20130614|4282_1 517 LARRGAALAGLGKLHEAVNDFQAAHVINPND 547
                 789**************************97 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   1.4e-10   1.5e-07       2      77 ..       9      78 ..       8      79 .. 0.94

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.4e-10
                --EEEEETTEEEEEEE-------S-EEEEE----EEEEE---....EEE---BSS-EEEEEEEEEE---EEEEEEE CS
  PF04969.11  2 rydWyQtleeVtitipvkgvikkedvkveikkkslkvsikgpgekeyllegeLfgeIdpeesswkiedtkieitLk 77
                +y+W +t++ V +++ + g  ++++v+v +++ ++k+s+      + l+e++L ++++++e +++i+d+++ +++ 
  MMETSP0890-20130614|4282_1  9 QYSWKETSDAVHVRLSLMGT-SPSSVDVVVSEVYIKISY-----PPRLVELDLIKKVNVDEKKYRIKDGQLTLSVG 78
                69******************.******************.....678**********************9887765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3     6e-07   0.00064       3      56 ..     299     352 ..     297     367 .. 0.90
   2 ?    2.3   1.6      0.24   2.5e+02       2      37 ..     380     420 ..     379     427 .. 0.72
   3 !   19.3   2.2   1.1e-06    0.0011       4      64 ..     430     490 ..     428     494 .. 0.91
   4 ?    3.2   0.2      0.13   1.4e+02       3      23 ..     520     540 ..     515     555 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 6e-07
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallra 56 
                 ++++++++Gd++ A +a++aal+ + e +  l ++a + lrlg +deAa+  +a
  MMETSP0890-20130614|4282_1 299 KGDEFWKRGDFRSATNAYSAALEIDKEWPACLANRAACELRLGLWDEAARDCDA 352
                 7899*********************66667******************976666 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.24
   PF13432.1   2 alArallraGdydeAlaaleaalala..Pe...aaeallll 37 
                 ++A a+   G y++A+  +++a      P+   +a   ++l
  MMETSP0890-20130614|4282_1 380 RRAAAFCGKGAYEAAITDFQRASQISedPLlleDAKRAQRL 420
                 689999*************9997766663333355555555 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 1.1e-06
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                 A++++   ++ eAl+a+++al  +P  + al ++a a l+ +++++A+a   aal++  +d
  MMETSP0890-20130614|4282_1 430 ADSFFLEEKFSEALQAYDQALSHEPAFVSALANRAAARLAVNEFAGAVADCSAALKIFEND 490
                 56667778999*******************************************9887665 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.13
   PF13432.1   3 lArallraGdydeAlaaleaa 23 
                 ++ al  +G++ eA++ ++aa
  MMETSP0890-20130614|4282_1 520 RGAALAGLGKLHEAVNDFQAA 540
                 566777777777777777665 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   2.1    0.0072       7.6       7      57 ..     305     355 ..     303     377 .. 0.86
   2 ?    4.5   1.1     0.026        27      32      66 ..     378     418 ..     351     423 .. 0.73
   3 !   13.6   0.1   3.9e-05     0.041       8      57 ..     436     485 ..     432     497 .. 0.90
   4 !   11.2   0.1   0.00022      0.23      35      63 ..     520     548 ..     515     561 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0072
   PF13371.1   7 reedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeafle 57 
                  ++df +A +++   l+++ + p  +  r+ ++ +lg + +Aa+d +a le
  MMETSP0890-20130614|4282_1 305 KRGDFRSATNAYSAALEIDKEWPACLANRAACELRLGLWDEAARDCDAGLE 355
                 5789999**************************************888774 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.026
   PF13371.1  32 rRDrGlllaqlgclaaAaedLeaflelcp......dapdae 66 
                 +  r+ +    g+++aA++d++++ + ++      da  a+
  MMETSP0890-20130614|4282_1 378 IARRAAAFCGKGAYEAAITDFQRASQISEdpllleDAKRAQ 418
                 555777788889************97776445554555444 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 3.9e-05
   PF13371.1   8 eedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeafle 57 
                 ee+f +AL++++  l   P  ++ +  r+ ++   +++a+A++d +a+l+
  MMETSP0890-20130614|4282_1 436 EEKFSEALQAYDQALSHEPAFVSALANRAAARLAVNEFAGAVADCSAALK 485
                 899******************************************99994 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00022
   PF13371.1  35 rGlllaqlgclaaAaedLeaflelcpdap 63 
                 rG +la lg l++A++d++a+    p++ 
  MMETSP0890-20130614|4282_1 520 RGAALAGLGKLHEAVNDFQAAHVINPNDK 548
                 9*******************998888775 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8   2.9e+03       8      26 ..     163     181 ..     161     182 .. 0.86
   2 !    9.2   0.0    0.0009      0.95       7      32 ..     299     324 ..     294     325 .. 0.92
   3 ?   -1.5   0.0       2.3   2.5e+03       4      21 ..     330     347 ..     328     350 .. 0.85
   4 ?    2.9   0.0     0.094        98      14      33 ..     388     407 ..     387     408 .. 0.89
   5 ?    2.3   0.0      0.15   1.5e+02      15      32 ..     437     454 ..     429     456 .. 0.82
   6 ?    4.2   0.0     0.036        38       2      27 ..     515     540 ..     514     541 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.8
                 --HHHHTT-HHHHHHHHH- CS
   PF13181.1   8 GdiYrqlGdydkAkeylek 26 
                 +++Y+ l + ++ ++ l++
  MMETSP0890-20130614|4282_1 163 SQVYATLRQVEQRENELKE 181
                 799****999999988886 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0009
                 ---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   7 lGdiYrqlGdydkAkeylekalelkp 32 
                 +Gd +++ Gd+ +A +++  ale+++
  MMETSP0890-20130614|4282_1 299 KGDEFWKRGDFRSATNAYSAALEIDK 324
                 79999*******************96 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 2.3
                 TTT---HHHHTT-HHHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAk 21 
                 + n++ +++ lG +d+A 
  MMETSP0890-20130614|4282_1 330 LANRAACELRLGLWDEAA 347
                 56899999*******995 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.094
                 TT-HHHHHHHHH---HHHH. CS
   PF13181.1  14 lGdydkAkeylekalelkpr 33 
                 +G y++A+  +++a +++ +
  MMETSP0890-20130614|4282_1 388 KGAYEAAITDFQRASQISED 407
                 799************99875 PP

  == domain 5    score: 2.3 bits;  conditional E-value: 0.15
                 T-HHHHHHHHH---HHHH CS
   PF13181.1  15 GdydkAkeylekalelkp 32 
                  ++++A++++ +al+  p
  MMETSP0890-20130614|4282_1 437 EKFSEALQAYDQALSHEP 454
                 5789**********9776 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.036
                 --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyleka 27 
                 +++ ++G +++ lG+ ++A + ++ a
  MMETSP0890-20130614|4282_1 515 RTLARRGAALAGLGKLHEAVNDFQAA 540
                 57889999**************9976 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.046        49      56      77 ..     303     324 ..     293     325 .. 0.68
   2 ?    5.4   0.1     0.014        15       6      34 ..     328     356 ..     325     366 .. 0.84
   3 !   12.2   2.0   0.00011      0.12      10      74 ..     380     451 ..     372     455 .. 0.82
   4 !    6.1   1.4    0.0089       9.3      10      77 ..     428     488 ..     418     489 .. 0.75
   5 ?    1.1   0.0      0.32   3.3e+02       6      42 ..     458     495 ..     453     499 .. 0.77
   6 ?    3.3   0.0     0.065        69       6      31 ..     515     540 ..     508     546 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.046
   PF13424.1  56 ylalgdydeAleylekAleiae 77 
                 ++++gd+ +A + +  Alei++
  MMETSP0890-20130614|4282_1 303 FWKRGDFRSATNAYSAALEIDK 324
                 5567777777777777777765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.014
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel 34 
                 ++l n a + +rlg +deA   +   le 
  MMETSP0890-20130614|4282_1 328 ACLANRAACELRLGLWDEAARDCDAGLEA 356
                 6899***************9888776665 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00011
   PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lre.l.gd....dhpdtaralnnlanlylalgdydeAleylekAle 74 
                 + a +++ +g y+ A++ +++a ++     l  d      +  a++    a+ +   ++++eAl+ + +Al 
  MMETSP0890-20130614|4282_1 380 RRAAAFCGKGAYEAAITDFQRASQIsEDPlLlEDakraQRLAKANTAKLSADSFFLEEKFSEALQAYDQALS 451
                 6789999******************766433244444347888999************************96 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0089
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                   a++++ ++++ eAl+ y +al          p  ++al n a + la ++++ A++    Al+i+e
  MMETSP0890-20130614|4282_1 428 LSADSFFLEEKFSEALQAYDQALSH-------EPAFVSALANRAAARLAVNEFAGAVADCSAALKIFE 488
                 4577788888888888888888854.......466788888888888888888888888888888876 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.32
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgddh 42 
                 ++l n a + ++  ++  A + +  al++    +gdd+
  MMETSP0890-20130614|4282_1 458 SALANRAAARLAVNEFAGAVADCSAALKIfENDTGDDN 495
                 56677888878888999999999999999666678876 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.065
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyeka 31 
                 ++l + + +l  lg+++eA + ++ a
  MMETSP0890-20130614|4282_1 515 RTLARRGAALAGLGKLHEAVNDFQAA 540
                 44444455555555555555444443 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.21   2.2e+02       9      30 ..     303     324 ..     298     325 .. 0.84
   2 ?    2.6   0.1      0.12   1.3e+02       1      20 [.     329     348 ..     329     367 .. 0.84
   3 !    6.0   0.0    0.0097        10       6      32 ..     382     408 ..     377     411 .. 0.87
   4 ?    3.6   0.0     0.058        61       8      31 ..     432     453 ..     428     458 .. 0.78
   5 ?   -1.0   0.1       1.8   1.8e+03       1      32 [.     459     491 ..     459     495 .. 0.75
   6 ?    4.9   0.0     0.023        24       1      18 [.     523     540 ..     523     540 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.21
   PF13176.1   9 ysrlgdyekAielyeraLaltk 30 
                 + ++gd++ A ++y +aL+++k
  MMETSP0890-20130614|4282_1 303 FWKRGDFRSATNAYSAALEIDK 324
                 6789***********9888876 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.12
   PF13176.1   1 allnLarlysrlgdyekAie 20 
                 +l n a +  rlg +++A++
  MMETSP0890-20130614|4282_1 329 CLANRAACELRLGLWDEAAR 348
                 6888899999********97 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0097
   PF13176.1   6 arlysrlgdyekAielyeraLaltkdp 32 
                 a +++  g ye Ai+ ++ra ++ +dp
  MMETSP0890-20130614|4282_1 382 AAAFCGKGAYEAAITDFQRASQISEDP 408
                 7899999************98888887 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.058
   PF13176.1   8 lysrlgdyekAielyeraLaltkd 31 
                  ++   ++++A+++y +  al  +
  MMETSP0890-20130614|4282_1 432 SFFLEEKFSEALQAYDQ--ALSHE 453
                 5666789**********..76655 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 1.8
   PF13176.1   1 allnLarlysrlgdyekAielyeraL.altkdp 32 
                 al n a +  +++++  A+  + +aL  +++d 
  MMETSP0890-20130614|4282_1 459 ALANRAAARLAVNEFAGAVADCSAALkIFENDT 491
                 688899999999999999987777665555555 PP

  == domain 6    score: 4.9 bits;  conditional E-value: 0.023
   PF13176.1   1 allnLarlysrlgdyekA 18 
                 al  L++l+++++d++ A
  MMETSP0890-20130614|4282_1 523 ALAGLGKLHEAVNDFQAA 540
                 7889************98 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       5.6   5.9e+03      16      30 ..     105     119 ..     101     129 .. 0.66
   2 ?    6.2   0.1     0.016        17      11      39 ..     303     331 ..     296     336 .. 0.81
   3 ?    4.2   0.7     0.074        78       3      30 ..     329     356 ..     326     377 .. 0.74
   4 ?    4.3   0.3     0.068        71       3      34 ..     377     408 ..     374     423 .. 0.79
   5 ?    7.4   1.0    0.0068       7.2       8      43 ..     430     465 ..     423     468 .. 0.77
   6 ?    6.5   0.3     0.013        13       2      34 ..     458     490 ..     457     493 .. 0.91
   7 ?    7.6   0.2    0.0058       6.1       2      35 ..     515     548 ..     514     554 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 5.6
   PF13428.1  16 dpdeAiallrralal 30 
                 + ++A+++lr+    
  MMETSP0890-20130614|4282_1 105 RRQAAREWLRDRETN 119
                 557788888877554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.016
   PF13428.1  11 llalGdpdeAiallrralalaPddaeall 39 
                 ++ +Gd+  A +++ +al+ + + ++ l 
  MMETSP0890-20130614|4282_1 303 FWKRGDFRSATNAYSAALEIDKEWPACLA 331
                 899****************9988666555 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.074
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                  l+ +a+  l+lG +deA++ +++ l++
  MMETSP0890-20130614|4282_1 329 CLANRAACELRLGLWDEAARDCDAGLEA 356
                 5778899999999999999988888773 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.068
   PF13428.1   3 allalarallalGdpdeAiallrralalaPdd 34 
                 + +++a+a+   G +++Ai  ++ra + + d 
  MMETSP0890-20130614|4282_1 377 LIARRAAAFCGKGAYEAAITDFQRASQISEDP 408
                 67899********************6655543 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0068
   PF13428.1   8 arallalGdpdeAiallrralalaPddaealllLar 43 
                 a+ ++  + + eA++++++al++ P    al + a+
  MMETSP0890-20130614|4282_1 430 ADSFFLEEKFSEALQAYDQALSHEPAFVSALANRAA 465
                 55666678899**************98776655543 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.013
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPdd 34 
                  al+ +a+a la +++++A+a + +al+ + +d
  MMETSP0890-20130614|4282_1 458 SALANRAAARLAVNEFAGAVADCSAALKIFEND 490
                 58999**********************999887 PP

  == domain 7    score: 7.6 bits;  conditional E-value: 0.0058
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPdda 35 
                 ++l+++++al+ lG + eA++ +++a   +P+d 
  MMETSP0890-20130614|4282_1 515 RTLARRGAALAGLGKLHEAVNDFQAAHVINPNDK 548
                 67899**************************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0096        10       1      32 [.     315     346 ..     315     348 .. 0.93
   2 ?    5.4   0.1     0.021        22       1      32 [.     445     476 ..     445     478 .. 0.91
   3 ?   -2.3   0.0         6   6.3e+03      15      32 ..     523     540 ..     519     541 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0096
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeA 32 
                 +y  ale+d++ +  + n+A + l++G ++eA
  MMETSP0890-20130614|4282_1 315 AYSAALEIDKEWPACLANRAACELRLGLWDEA 346
                 5999***********************99988 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.021
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeA 32 
                 +y +al ++P  + a+ n+A + l+ ++++ A
  MMETSP0890-20130614|4282_1 445 AYDQALSHEPAFVSALANRAAARLAVNEFAGA 476
                 699*******************9999998877 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 6
   PF13431.1  15 aynnLAelllnnGdleeA 32 
                 a+  L++l+ + +d++ A
  MMETSP0890-20130614|4282_1 523 ALAGLGKLHEAVNDFQAA 540
                 455678888888877776 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.6    0.0013       1.3      37     136 ..     123     226 ..      98     273 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX.....XXXXXXXX CS
  PF01496.14  37 erklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk....veelrelssldeefkalr 136
                   k+rk e+  +++k+++  e  +++v e+k+ +++e+  +++ + l++ve+ +++L+++ ne++  +++++eeke++e+      ++++ e +++ ++ ++++
  MMETSP0890-20130614|4282_1 123 RAKVRKEEDARSALKTKMGLEAREESVLEEKKADEKERAESQVYATLRQVEQRENELKETKNEINDPKEIVNEEKEKIEDGIldldRDAIVEKNEIVDASENNE 226
                 4577888888888888999888888899999999999999*************************************999766666444444444444444443 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.8     0.013        14     198     280 ..     151     235 ..     134     249 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.013
  PF04791.11 198 aekledekeeaessvddilesvdrlsrlledveeqisksateegklsrelkkaa...esnsqeedslaldreenkivkseekllli 280
                  ek +deke aes+v ++l++v++ +  l++++++i   + + ++ ++++++++   ++   +e++   d++en+  k+eek+++ 
  MMETSP0890-20130614|4282_1 151 EEKKADEKERAESQVYATLRQVEQRENELKETKNEINDPKEIVNEEKEKIEDGIldlDRDAIVEKNEIVDASENN-EKQEEKTVFP 235
                 48999********************77777777777666655555555555554111566666777777777666.7778887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1145  (0.0837478); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.74
# Mc/sec: 1839.37
//
Query:       MMETSP0890-20130614|4294_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-12   46.4   0.0    3.4e-12   45.7   0.0    1.4  1  PF02209.14 Villin headpiece domain
  ------ inclusion threshold ------
        4.1    7.3   7.1          5    7.0   4.9    1.1  1  PF02993.9  Minor capsid protein VI


Domain annotation for each model (and alignments):
>> PF02209.14  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   4.9e-16   3.4e-12       1      36 []     148     183 .]     148     183 .] 1.00

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 4.9e-16
                 GS-HHHHHHHTSS-HHHHTTS-HHHHHHHHHHCT-- CS
  PF02209.14   1 YLsdedFeevFgMtkeeFykLPaWKqnqlKkklgLF 36 
                 YL+d++Fe+v+g ++  +y+LP WK++  Kk++gLF
  MMETSP0890-20130614|4294_1 148 YLADSEFEQVLGLSRADYYALPRWKRDSKKKSVGLF 183
                 9*********************************** PP

>> PF02993.9  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.9   0.00073         5     100     196 ..      22     119 ..      11     147 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00073
   PF02993.9 100 kdlekrlekrlgeeepatqeetvedlkqaeekkkrpeaeetlvpaapepPsleealkqkpapveepveesatavla.ldkpvtlelpp.aeqkapkvvp 196
                 k l  r  k l+ +epatqee  ++ + ++e+ +r++     v+a   p  + e+++ kp p  + +++  t++++ ++ ++t e    ++++++++v+
  MMETSP0890-20130614|4294_1  22 KILRDRDLKFLN-KEPATQEEIPKSTQIQKENTERDDLIGRQVIAPATPTHVDEPIHHKPSPKLRQIKQIITKSPVqEQSEATNEILDnQKTQKNNSVA 119
                 223333333333.99999999999999999999999999999***99999******9999777677776666666432223333322211222222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 797.33
//
Query:       MMETSP0890-20130614|4295_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 250.53
//
Query:       MMETSP0890-20130614|4293_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.45s 00:00:01.15 Elapsed: 00:00:01.12
# Mc/sec: 837.66
//
Query:       MMETSP0890-20130614|4297_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.84
# Mc/sec: 1395.02
//
Query:       MMETSP0890-20130614|4298_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    8.6   5.3       0.53   10.3   0.9    2.0  2  PF07392.7 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus


Domain annotation for each model (and alignments):
>> PF07392.7  Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   3.9e-05      0.53      10      25 ..      20      35 ..      15      38 .. 0.92
   2 ?   -1.2   0.1      0.16   2.2e+03      18      31 ..     185     198 ..     182     221 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.9e-05
   PF07392.7 10 RacrpprvRvFvvkiv 25
                R+ rp+r+R Fvv+++
  MMETSP0890-20130614|4298_1 20 RTSRPHRIRRFVVQVL 35
                99************75 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.16
   PF07392.7  18 RvFvvkivrssrer 31 
                 RvF v+ vr   ++
  MMETSP0890-20130614|4298_1 185 RVFNVRYVRRNIRK 198
                 99999999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.87
# Mc/sec: 1801.40
//
Query:       MMETSP0890-20130614|4301_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   18.4   1.4          1    9.0   0.3    2.3  2  PF06724.6  Domain of Unknown Function (DUF1206)
     0.0062   16.7   3.5      0.014   15.6   2.4    1.6  1  PF13517.1  Family description
  ------ inclusion threshold ------
      0.056   12.3   0.1      0.083   11.7   0.1    1.2  1  PF02535.17 ZIP Zinc transporter
       0.48    9.8   7.4        1.9    7.8   5.2    1.7  1  PF06682.7  Protein of unknown function (DUF1183)
        1.1    8.6   5.2       0.99    8.8   2.3    1.9  2  PF12266.3  Protein of unknown function (DUF3613)


Domain annotation for each model (and alignments):
>> PF06724.6  Domain of Unknown Function (DUF1206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3   0.00037         1      24      53 ..      31      60 ..      22      74 .. 0.79
   2 !    8.0   0.0   0.00074         2      21      71 ..     126     176 ..     117     178 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00037
   PF06724.6 24 ggggggasgtkgalatLlsqpfGrvllgav 53
                gggggg+sg ++ + t+++  +G+++ +++
  MMETSP0890-20130614|4301_1 31 GGGGGGGSGGSDSTPTIAGAAAGGAVAFII 60
                478*****************8887766554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00074
   PF06724.6  21 aalggggggasgtkgalatLlsqpfGrvllgavglgllayglyrlvkaitr 71 
                 + ++ +++++ ++++a+a++ +     +ll+a g  + + ++ r++kai++
  MMETSP0890-20130614|4301_1 126 HSTSQHSSSQPSESSAAARVNARATADLLLAAGGMLPGIGAVCRAAKAILD 176
                 555555999***************************************987 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.4   5.1e-06     0.014       1      45 [.       3      49 ..       3      59 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.1e-06
   PF13517.1  1 DldgDGdlDlvvag..dgglrlylnngdGtftdvaetslgaggggtg 45
                D+dgDGd D++ a+  d+++ +y  n +G +   ++ +++++ + +g
  MMETSP0890-20130614|4301_1  3 DVDGDGDIDVLSASwlDDTIAWYEKNFTGGGGGGGSGGSDSTPTIAG 49
                9************8667888888888666555444444444433333 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     3e-05     0.083      82     170 ..      48     146 ..      28     161 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3e-05
  PF02535.17  82 gllvllGffllllleelltmikesdahshgegrghdkehsettsdeaskskes...........kvenaeseeeeteeeesdhdheskeksesdkesela 170
                   ++++G++ + ++  ++  ++ + +++++  r ++++ ++  ++e ++++ +           ++++++s+ ++  +++s  +h+s++ ses+++ +++
  MMETSP0890-20130614|4301_1  48 AGAAAGGAVAFIIIGLCIWRYFCR-KSAISSPRPSKAKLEQIPQNEGNEEDDEeaphpstkppqHSTSQHSTLQHSTSQHSTSQHSSSQPSESSAAARVN 146
                 556667777777777766555555.333333333333333333333333333344444433332444444444444444444444444444444444443 PP

>> PF06682.7  Protein of unknown function (DUF1183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.2   0.00071       1.9     158     252 ..      50     135 ..      25     161 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00071
   PF06682.7 158 slllvvivllvlalilyklflssgevsresrseeagydsggggggGggggdlesangppppyfk..ssfpgsaglsakpssgygsagtrsqgeqgwr 252
                 +     +  ++++l+++  f +++  s  +r+++a+ ++ +   g +++++ + +++  pp ++  ++++ ++++s++++s+++          +++
  MMETSP0890-20130614|4301_1  50 AAAGGAVAFIIIGLCIWRYFCRKSAISS-PRPSKAKLEQIPQNEGNEEDDEEAPHPSTKPPQHStsQHSTLQHSTSQHSTSQHS----------SSQ 135
                 3333456677899*****9998877655.7777777777333333333333344445555553311222222222222222222..........111 PP

>> PF12266.3  Protein of unknown function (DUF3613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.3   0.00036      0.99       4      41 ..      99     135 ..      95     146 .. 0.76
   2 ?   -2.4   0.0       1.2   3.2e+03      26      42 ..     214     229 ..     209     232 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00036
   PF12266.3   4 aqaaapsaseagtaTeawLalQasnraAstpaqpltga 41 
                 ++a  ps+++++++T++  +lQ s ++ s + q+ + +
  MMETSP0890-20130614|4301_1  99 EEAPHPSTKPPQHSTSQHSTLQHSTSQHS-TSQHSSSQ 135
                 3348899999*******************.77766544 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.2
   PF12266.3  26 asnraAstpaqpltgae 42 
                   n  A    q++t+ e
  MMETSP0890-20130614|4301_1 214 TGNAKA-LVEQHMTELE 229
                 444444.4899998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1079  (0.0789204); expected 273.4 (0.02)
Passed bias filter:                      613  (0.0448362); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.46s 00:00:01.19 Elapsed: 00:00:00.87
# Mc/sec: 853.87
//
Query:       MMETSP0890-20130614|4300_1  [L=1017]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-44  149.9   0.1    1.1e-43  148.7   0.1    1.6  1  PF00009.22 Elongation factor Tu GTP binding domain
      2e-11   43.3   0.0    5.1e-11   42.0   0.0    1.7  1  PF03764.13 Elongation factor G, domain IV
    4.7e-09   35.6   0.0      1e-08   34.5   0.0    1.6  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00015   21.5   0.0     0.0004   20.2   0.0    1.8  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    0.00023   21.0   0.0    0.00053   19.9   0.0    1.6  1  PF03144.20 Elongation factor Tu domain 2
     0.0051   16.5   0.0      0.014   15.1   0.0    1.8  1  PF00679.19 Elongation factor G C-terminus
  ------ inclusion threshold ------
      0.013   14.3   0.1       0.05   12.4   0.0    1.9  2  PF00735.13 Septin
      0.046   14.0   0.0       0.13   12.6   0.0    1.9  1  PF08477.8  Miro-like protein
        0.2   11.2   2.7        0.7    9.4   1.9    1.9  1  PF03925.8  SeqA protein


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.1   7.1e-47   1.1e-43       3     174 ..     249     439 ..     247     520 .. 0.81

  Alignments for each domain:
  == domain 1    score: 148.7 bits;  conditional E-value: 7.1e-47
                 EEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST...........CHHHHHHHHHHHHHH.................HHHCTTGCT...CGEEEEEE-STCCH..........H CS
  PF00009.22   3 irnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv...........eaeleeiveelkekl.................lekylekge...eevpvvpgSalkge..........g 174
                 +rn+++i+hvDhGK+++ d+ll++ag+ ++   +a++ ++ld+ +ee +rgiTiks+a+sl+   +k ++++iD+PGH+dF +ev+++l+v+Dg+ lvvd+ eG+ +qTe  l++a + g+ i +v+NKiDr+            ++           +                 +       +    + +v++gSa+ ++          g
  MMETSP0890-20130614|4300_1 249 VRNVTVIAHVDHGKSSVADQLLAAAGRLRS--DKAGQVQALDSEAEEAKRGITIKSSAVSLD--FDKLRLTMIDSPGHADFNNEVASALAVTDGVFLVVDVCEGIRVQTEATLKQAVTCGLGIALVLNKIDRLiieqrletseaSNR-----------IrtiidqvnalllrlgssT-------KlsfAQGNVIFGSAKFAWlasrttldalG 439
                 69************************9888..55566778**********************..*********************************************************************66554444444444...........4333444444445544432.......24445567999999999965555444441 PP

>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.4e-14   5.1e-11      23     120 .]     800     896 ..     788     896 .. 0.94

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.4e-14
                 -----------EEEEEE------EEEE--------GGGHHHHH---TTTT-----------SEEEEEEE----T..TT--HHHHHH---HHHHHHHH--- CS
  PF03764.13  23 qsggdgqyakvilriePlegggnefvdetkggqvpkefkeavekGfqealkeGplagepvtdvkvtLtdgslhe..vdsseaafkpaarralkeallkAk 120
                  +g+++   +++++i+    +g  ++d  + + ++ efk+  +++f++ +k+Gpl g  v++v   +td+ +h+   ++ + a + aa ra+ +all+A+
  MMETSP0890-20130614|4300_1 800 AAGWTKAKLRKVWAISD---SGSLLIDGSSQIPHLAEFKDPAVAAFEQLTKSGPLSGSVVVGVMLIITDALIHAvaAQRRGPALQHAALRAMTAALLTAQ 896
                 38***************...5*****************************************************999999******************96 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   6.8e-12     1e-08       1      69 [.      55     115 ..      55     116 .. 0.97

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 6.8e-12
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +++gnLp+ v+ee +  l sk+G+ +s+ +++      +g+af+ ++s+ + e+ l   ++++l+gr+l
  MMETSP0890-20130614|4300_1  55 IYIGNLPKKVNEEVVWALCSKYGELTSFHVSK------RGHAFCSYTSKAATEDFLT--HEHELDGRKL 115
                 8*******************************......8*****************9..9999999986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.6e-07    0.0004       1      68 [.      55     115 ..      55     115 .. 0.96

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.6e-07
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                 +y+++lp++v+ee + ++ s+yg +++ ++ +      rg Af  + s+++ + +l++ ++ l+gr++
  MMETSP0890-20130614|4300_1  55 IYIGNLPKKVNEEVVWALCSKYGELTSFHVSK------RGHAFCSYTSKAATEDFLTH-EHELDGRKL 115
                 8*****************************98......9****************998.999999986 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.5e-07   0.00053       5      73 ..     582     647 ..     580     648 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.5e-07
                 EEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
  PF03144.20   5 tgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                 +grv+ G+l    +++ +g++++k+   +++ +l++f  ++    + a +G+ v+i+gl+d++++ +tl
  MMETSP0890-20130614|4300_1 582 LGRVFAGELSAETRLYEAGKESKKT---HKILRLVRFGVREVSSCKRAGPGDVVGIVGLNDDLEAPATL 647
                 69***************99988888...*********9999999*****************98887776 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.3e-06     0.014       2      55 ..     899     948 ..     898     968 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.3e-06
  PF00679.19   2 llEPimeveie.vpeeylgkvisdltkrrGeilsmenagenrvvieaevPlaeli 55 
                 llEPi+++ei+ +p + l  ++  l  r ++il+++        i+a vP+ e++
  MMETSP0890-20130614|4300_1 899 LLEPIYHMEIQlIPRDALRGILDTLRDRDATILDCQDS-----QIQALVPVVESL 948
                 8*********9458**********************99.....999999998875 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.3e-05      0.05       6      80 ..     251     329 ..     247     339 .. 0.71
   2 ?   -1.9   0.0      0.75   1.1e+03     130     162 ..     650     682 ..     645     715 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.3e-05
  PF00735.13   6 tlmvvGesglGkttlintlfetdlieee......eeleeakeekkktveikkkkaeieedgvklnltvidtpgfGdaidns 80 
                 ++ v+ +   Gk+++ + l++     ++      + l++++ee+k+ ++ik+++++++ d  kl+lt+id+pg+ d+ +  
  MMETSP0890-20130614|4300_1 251 NVTVIAHVDHGKSSVADQLLAAAGRLRSdkagqvQALDSEAEEAKRGITIKSSAVSLDFD--KLRLTMIDSPGHADFNNEV 329
                 667788888899999888887643322223444455666667777788888887777777..9************987764 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.75
  PF00735.13 130 pldvelmkklsekvnliPviaKaDtltkeElke 162
                 +ld++ +++l++ v   Pv+  a +l ++  ++
  MMETSP0890-20130614|4300_1 650 TLDIAPFRQLNTSVTAKPVVRYAVMLKDQTKRN 682
                 79*****************99998887765544 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.6e-05      0.13       3     103 ..     253     361 ..     251     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.6e-05
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp............kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelr 103
                  v+   + GKss   ql+                 +++ +e   g t+ +  + +d d+  l + d  g+++++ e   +l  +d++ lv+d++++  +++ +   a l+++ 
  MMETSP0890-20130614|4300_1 253 TVIAHVDHGKSSVADQLLAAAGRlrsdkagqvqalDSEAEEAKRGITIKSSAVSLDFDKLRLTMIDSPGHADFNNEVASALAVTDGVFLVVDVCEGIRVQT-E---ATLKQAV 361
                 5666667899999999998877788899999998888888888888888888888888888***************9999*************99885555.2...3344444 PP

>> PF03925.8  SeqA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00046       0.7      19     142 ..     118     293 ..     116     303 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00046
   PF03925.8  19 eriGEsaSdILRRLLklpveavekepaaikepvleeek.....................................................eseekavvkekkksesesaesvedvealleseelaeqkkavgrFlllLsalyrlnpeqFekvlkvkGrtRlYfarskeeLlasgks 142
                 er GEsa   LRRLL  ++    +++++++++ l+ +                                                      e+e+  ++ ++++ + esa + ++v++ +++++l+ ++ a+ r +++++ + + +++  ++ l+  Gr R   a + ++L +  ++
  MMETSP0890-20130614|4300_1 118 ERAGESAELRLRRLLGGDTPPKITATTENEKKLLRLDLpvelgggvviapaqeaesrkvaraelaqevldfvharehnkvsdqalqpesaiEEEQVRNKVSEQALKPESAIEEDQVRNKISDQALQPES-AIVRNVTVIAHVDHGKSSVADQLLAAAGRLRSDKAGQVQALDSEAEE 293
                 7889***********9887653333333443443333378899999999999999999999999999999999999999998888887665333333334444445556666669*****999998776.666888999999999999999999*****999888888877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       683  (0.0499561); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.42u 0.40s 00:00:01.81 Elapsed: 00:00:01.43
# Mc/sec: 1704.26
//
Query:       MMETSP0890-20130614|4302_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-07   28.7   0.6    2.3e-06   27.2   0.4    1.7  1  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.4   1.7e-10   2.3e-06      80     162 ..       6      81 ..       2      84 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.7e-10
   PF14240.1  80 eedsesaliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt......gtYhYhvtdeypyiirc 162
                 +++++s+ iG+++DGFp+Yg+ + +g + +s               ++ +++    D+c G  ++         Y+Y++  +y +  +c
  MMETSP0890-20130614|4302_1   6 TDNEHSPQIGFLFDGFPVYGPRGPNGIMMKS--------C-----TESTADSVYCVDKCGGFADDGsiindgYVYRYYIMGTYKVQASC 81 
                 56899**********************9332........2.....23334445568999998888888888788999998888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      115  (0.00841135); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.89
# Mc/sec: 1173.95
//
Query:       MMETSP0890-20130614|4296_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-14   51.7   0.1    1.3e-13   51.1   0.0    1.2  1  PF01636.18 Phosphotransferase enzyme family
    7.7e-05   22.2   0.0    0.00017   21.1   0.0    1.5  1  PF01633.15 Choline/ethanolamine kinase
     0.0059   15.6   0.0     0.0081   15.2   0.0    1.4  1  PF02958.15 Ecdysteroid kinase
  ------ inclusion threshold ------
      0.062   11.7   0.0      0.093   11.2   0.0    1.2  1  PF07914.6  Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   3.8e-17   1.3e-13      37     209 ..      70     264 ..      40     284 .. 0.67

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 3.8e-17
                 HHHHHHHHHHHCCSSSB--BEE....E..E-CSSCSC...EEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS--TTSHGG....HCTBCTHHHHHHHHHHHHHHHHHCTHH..HHHHHHHH.......HHHHHHHHHHCSS--EEB-SS-SGGGEEEE.......TTTTEE..EE---TT-BBE-TCHHHHCCC..T CS
  PF01636.18  37 lrrevallrlLakagipvPevl....agdtdddvlgl...lfalleyvpgevlerklnarqlpallealaellaalhqadpaadpla....dflapyltllrllesataalvaselle..lleeleer.......vlaalaallpgaeppvllHgDlhpgNllvd.......pddgrv..gviDfedaglgpplyDlasll..r 209
                 ++ ++a+lr+L ++gi +P+++      +++ d ++     ++ll++ p+  + r +    + a ++a++ +l+ lh+  +++d+        l + ++l++++ + +++++  +  +  +   ++         ++  l++ l  +++++llHgD+ ++N+++        +   +    +iD+ed+++gp +yDla +l  +
  MMETSP0890-20130614|4296_1  70 ASTQLAVLRALEERGI-APRPMcklaVACMTKDKRPAsaiAMQLLSGKPANLAVR-EGFVSAVAGYAAVGTALGHLHAN-QNFDRSNlpnaVDLSDPRYLEIFILRTKDGKLEDKVRPeiR---RWLVednkiskIRKILQSSLA-NLKHGLLHGDPYSDNVMLLnptdispD--AHFeaRLIDWEDSSFGPLVYDLACALvaA 264
                 56789***********.77776444434677777777666888888888888888.6666788889999*****99998.55444441111444444444444444433444444444322...222233455533333333333.6889********************752..333346******************99441 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.8e-08   0.00017     109     195 ..     176     271 ..     143     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.8e-08
                 EE--TT----EE-HHHHHHHHHHHHHHHTT----..EEEE-S------EEE.......-------EE---TT-EEEEHHHHHHHHHHHTTEE---S CS
  PF01633.15 109 kkeskkkqlklinledlekeleeleklleekesp..vvfCHnDlqegNill.......nkeekklvlIDFEYasynyrafDlAnhfcEwagdyeee 195
                  k ++k + +  ++   ++++++++k+l+++  +    + H D  + N++l        + + + +lID+E +s+ + ++DlA+ +  ++++y ++
  MMETSP0890-20130614|4296_1 176 GKLEDKVRPEIRRWLVEDNKISKIRKILQSSLANlkHGLLHGDPYSDNVMLlnptdisPDAHFEARLIDWEDSSFGPLVYDLACALVAASFNYFSP 271
                 555666667777777788999*******755555459999*****************9999*************************9999998665 PP

>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.4e-06    0.0081     214     262 ..     212     263 ..      92     282 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.4e-06
  PF02958.15 214 nvLnHGDlwvnNimfkydeeg....epedvilvDFQlsrygspalDLlyflyt 262
                 + L+HGD  + N+m+   +++    +  +++l+D+  s +g+++ DL++ l+ 
  MMETSP0890-20130614|4296_1 212 HGLLHGDPYSDNVMLLN-PTDispdAHFEARLIDWEDSSFGPLVYDLACALVA 263
                 569***********954.454434556689******************98865 PP

>> PF07914.6  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05     0.093     244     316 ..     186     263 ..     166     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.7e-05
   PF07914.6 244 veeylkeililkkatnv.skvlGi.kkvlvhgDlwqaNiLfseeee....gklklkkiiDyQlvslgnpaeDlvrllls 316
                 +++ l e ++++k+ ++ ++ l   k+ l hgD ++ N++  + ++    ++++  ++iD+   s+g+   Dl++ l++
  MMETSP0890-20130614|4296_1 186 IRRWLVEDNKISKIRKIlQSSLANlKHGLLHGDPYSDNVMLLNPTDispdAHFE-ARLIDWEDSSFGPLVYDLACALVA 263
                 4445555555666655523334444999**********9986644411114444.47******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:01.20
# Mc/sec: 798.79
//
Query:       MMETSP0890-20130614|4304_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.2e-151  502.0   0.0     1e-150  501.8   0.0    1.0  1  PF01474.11 Class-II DAHP synthetase family


Domain annotation for each model (and alignments):
>> PF01474.11  Class-II DAHP synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.8   0.0  7.6e-155    1e-150      92     439 .]       1     348 [.       1     348 [. 0.98

  Alignments for each domain:
  == domain 1    score: 501.8 bits;  conditional E-value: 7.6e-155
  PF01474.11  92 ltaaaklpvvkvgRiAGQyaKPRssetEtvdgvelpsyrGdivnglefteeaRepdperllkaykqsaatlnlvrallsggladlekveewelsfvkeselkekyeelaeeieealefmeavgveseeseqleevelytsheaLlLeYeealtradseegklydtsahflWiGeRtrqldgahveflrgiaNPiGvKvGpstepeelvelldklnpenepGrltlitrlGadkveelLpklieavkaegakvvwscDpmHGNtkksseglKtRkfddilkevkeffevhkeegtilgGvHlEltgedVtEcigg.aeeleeedlserYetacDPRLnaeQalelaflva 439
                 +t+++++p+vk+gR+AGQ+aKPRss+tEt dg +lp+yrGd+vng ef+ +aR+pdp+ ++kay+q a+tln++ra++ gg+ad+++ ++w+l+f++++++++ y++la +i+e+l+fm+a+g+++ ++++l+++ +yt+he+LlL+Ye+altr+ds++g++yd+sah+lW+GeRtrq   ah ef+rgi+NP+GvK++++++p++++++l++lnp+n+pGr++litr+Gadk++e Lp+l++av+++g  ++w++Dp+HGNt  s++g+KtR++d+i +e+ +ffevh++ gt++gGvHlE+tg+dVtEc+gg   +++ edl++rY t+cDPRLn +Qal+laf +a
  MMETSP0890-20130614|4304_1   1 MTYGGGQPIVKIGRMAGQFAKPRSSTTETRDGITLPAYRGDNVNGEEFSVQARTPDPQHMIKAYHQCAQTLNILRAFAVGGYADMSRLHAWNLDFMERTKEGSMYRSLAWKIDESLRFMRAIGIDT-TTPELTQTAFYTAHECLLLPYEQALTRQDSTTGRWYDCSAHLLWVGERTRQPGCAHFEFVRGISNPLGVKISDKATPQDVLHILETLNPNNIPGRIMLITRMGADKIREKLPPLVRAVRDSGYAALWVSDPVHGNTFMSDSGYKTRSYDAIKDELLGFFEVHAALGTHAGGVHLEMTGQDVTECVGGdVGTVNVEDLNQRYITHCDPRLNGRQALSLAFEIA 348
                 6899*************************************************************************************************************************5.59****************************************************************************************************************************************************************************************94457888*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:01.01
# Mc/sec: 873.13
//
Query:       MMETSP0890-20130614|4305_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00098   19.1   0.5      0.025   14.6   0.0    2.2  2  PF12666.2  PrgI family protein
     0.0031   17.3   0.0     0.0047   16.7   0.0    1.3  1  PF12822.2  Protein of unknown function (DUF3816)
  ------ inclusion threshold ------
      0.011   14.8   0.3      0.019   14.0   0.2    1.3  1  PF01040.13 UbiA prenyltransferase family
      0.015   14.6   1.3      0.036   13.4   0.9    1.7  1  PF04434.12 SWIM zinc finger
       0.03   13.6   0.0      0.045   13.0   0.0    1.2  1  PF00487.19 Fatty acid desaturase
       0.11   11.7   0.3       0.29   10.3   0.2    1.6  2  PF00664.18 ABC transporter transmembrane region
       0.17   11.8   1.9       0.25   11.3   0.0    2.2  3  PF11669.3  WW domain-binding protein 1
        2.6    6.5   6.2        3.8    5.9   0.2    2.1  2  PF09913.4  Predicted membrane protein (DUF2142)


Domain annotation for each model (and alignments):
>> PF12666.2  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.096   1.6e+02      53      72 ..     141     160 ..     135     176 .. 0.78
   2 !   14.6   0.0   1.5e-05     0.025      19      71 ..     196     248 ..     188     259 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.096
   PF12666.2  53 ilvvlpfallafykkkglkf 72 
                  l+ +++ llaf k k++k+
  MMETSP0890-20130614|4305_1 141 ALLFIFILLLAFKKHKKYKA 160
                 56778899******999875 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.5e-05
   PF12666.2  19 lRQliclilavlvgvgvflllrlylgtsialilmilvvlpfallafykkkglk 71 
                 +R ++  il++++++++  +l l+lg+ +ali+++lv++p+a++  y+ k+ k
  MMETSP0890-20130614|4305_1 196 KRNCCRHILSAFSALLAGYVLTLLLGPFFALIFVWLVLVPLAVVNHYRAKKAK 248
                 7888899999******99999**********************9999998765 PP

>> PF12822.2  Protein of unknown function (DUF3816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.8e-06    0.0047      68     132 ..     131     239 ..     113     289 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.8e-06
   PF12822.2  68 fiflgfllsfvpriligviag.llykkhkkkkkkek...............................................vlsiiisgvlgtivatllliliilplyakl 132
                 f+      + ++++l++++   l +kkhkk k+ +k                                                 +++++++lg ++a+++++l+++pl   +
  MMETSP0890-20130614|4305_1 131 FLG---CGFPLFGALLFIFILlLAFKKHKKYKAITKifsairndpelkarvekaadtklpqpccntdkkrnccrhilsafsalLAGYVLTLLLGPFFALIFVWLVLVPLAV-V 239
                 333...344444444444444277888888888777***************************************999999998999999999999999999999988875.2 PP

>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   1.1e-05     0.019     145     242 ..     128     250 ..     105     263 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
  PF01040.13 145 plpllllalllfllalallltn.dirDvegD.raaGirt.......lpvrl.grkatly.................alllaaallatallllllaplllllavalaalallrallllrrrdpesg 242
                 p+p+l ++++lf   l++++    ++ ++   +   i +       l +r  + +a +                  +l +++alla+  l+lll+p++ l++v l+ ++l++ +  +r+++ ++ 
  MMETSP0890-20130614|4305_1 128 PPPFLGCGFPLFGALLFIFILLlAFKKHKKYkAITKIFSairndpeLKARVeK-AADTKlpqpccntdkkrnccrhILSAFSALLAGYVLTLLLGPFFALIFVWLVLVPLAV-VNHYRAKKAKKQ 250
                 67777777777777777777768888888884444444466666665555542.3333357777777777778886444555555566677777777777777777777776.333333333333 PP

>> PF04434.12  SWIM zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   2.1e-05     0.036      19      39 ..     190     210 ..     190     211 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.1e-05
  PF04434.12  19 CpdfqfdgipCkHalAvllal 39 
                 C++ ++++ +C+H+l +++al
  MMETSP0890-20130614|4305_1 190 CCNTDKKRNCCRHILSAFSAL 210
                 888899************997 PP

>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.045     105     184 ..     141     245 ..     130     264 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.6e-05
  PF00487.19 105 lllggllfllalerrklrkrrrrkg.............................lalllallilalllalaglllllsglgalllyvvplalaltvlllvnyleHygle 184
                 +ll+ +++lla+ ++k+ k+ +                                + ++++  il ++ al+++++l+ +l + +++++  +l+l+ l++vn   Hy   
  MMETSP0890-20130614|4305_1 141 ALLFIFILLLAFKKHKKYKAITKIFsairndpelkarvekaadtklpqpccntdKKRNCCRHILSAFSALLAGYVLT-LLLGPFFALIFVWLVLVPLAVVN---HYRAK 245
                 44444444444444443333332224444455555588888888888889999866677777777777777776665.5788888999999999999****...*9864 PP

>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   2.5e+03      43      60 ..     134     151 ..     112     154 .. 0.72
   2 ?   10.3   0.2   0.00017      0.29     122     170 ..     203     252 ..     199     264 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.4
  PF00664.18  43 lailliavgvlivlllqg 60 
                 + + l++++++i++ll++
  MMETSP0890-20130614|4305_1 134 CGFPLFGALLFIFILLLA 151
                 556677777777777765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00017
  PF00664.18 122 ffqslatfvgglivmfylgwkltlvll.ailpllilvsavlakilkslqk 170
                 ++ +++ +++g+++ ++lg+ ++l+ + ++l++l++v+ ++ak+ k+   
  MMETSP0890-20130614|4305_1 203 ILSAFSALLAGYVLTLLLGPFFALIFVwLVLVPLAVVNHYRAKKAKKQAS 252
                 67789999****************98735777888888888887766443 PP

>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       4.2   7.2e+03      90     100 ..     119     130 ..     102     131 .. 0.61
   2 ?   -1.9   0.0       1.8   3.1e+03      27      48 ..     139     160 ..     136     174 .. 0.71
   3 ?   11.3   0.0   0.00015      0.25       7      59 ..     189     258 ..     183     281 .. 0.62

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.2
   PF11669.3  90 vvsfpit.pPPP 100
                  ++fp+  pPPP
  MMETSP0890-20130614|4305_1 119 FEHFPPGgPPPP 130
                 445555415566 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.8
   PF11669.3  27 vwvliiilallcayslrrkkrr 48 
                 + +l++i+ ll a+++++k + 
  MMETSP0890-20130614|4305_1 139 FGALLFIFILLLAFKKHKKYKA 160
                 5567777777777777666554 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00015
   PF11669.3   7 eccg...esgcc....................lyyyelWyfWlvwvliiilallcayslrrkkrrlqeqqrqseid 59 
                  cc+   + +cc                      ++ l + Wlv   ++ la++  y+ +++k++       + ++
  MMETSP0890-20130614|4305_1 189 PCCNtdkKRNCCrhilsafsallagyvltlllGPFFALIFVWLV---LVPLAVVNHYRAKKAKKQAST---EESVQ 258
                 57752223578899999999999977664433233344444444...555666666666666665533...33333 PP

>> PF09913.4  Predicted membrane protein (DUF2142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.8     0.016        28     126     150 ..     138     162 ..     137     168 .. 0.82
   2 ?    5.9   0.2    0.0022       3.8     196     233 ..     210     247 ..     201     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.016
   PF09913.4 126 lfnlllyvlllafaikllprgrall 150
                 lf +ll++ +l++a+k+ ++++a+ 
  MMETSP0890-20130614|4305_1 138 LFGALLFIFILLLAFKKHKKYKAIT 162
                 7999999999999999999999874 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0022
   PF09913.4 196 llillllaavllalskppyvllallvllipaekfsrkr 233
                 ll+ ++l+ +l  +   ++v+l+l++l++++ ++++k 
  MMETSP0890-20130614|4305_1 210 LLAGYVLTLLLGPFFALIFVWLVLVPLAVVNHYRAKKA 247
                 6889999999999*****************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       841  (0.0615126); expected 273.4 (0.02)
Passed bias filter:                      604  (0.0441779); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.95
# Mc/sec: 751.70
//
Query:       MMETSP0890-20130614|4303_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-48  163.5   0.0    2.2e-47  161.4   0.0    1.8  1  PF03069.10 Acetamidase/Formamidase family
  ------ inclusion threshold ------
      0.044   13.6   2.1        1.9    8.4   0.0    2.9  3  PF08746.6  RING-like domain
      0.057   13.0   0.6      0.084   12.5   0.4    1.2  1  PF01920.15 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF03069.10  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   4.8e-51   2.2e-47      13     368 ..     128     510 ..     117     511 .. 0.83

  Alignments for each domain:
  == domain 1    score: 161.4 bits;  conditional E-value: 4.8e-51
  PF03069.10  13 eqanrlhnrwhpdipevaevkpgeevrvetldalgGqiknnds..addvkkvdlt.kvhelsGpieVegakpgDllvveildvgpieaeeGytgvfakenGgGvltdkvekaakaiwe.......fegkyavsrqvpgvrfpglthvGvigvapskellatineregallaedgdevlvlieapepegale.........eaiakegarTippRengGnlDiknlsrgskvylPVfveGallsiGDlHfsqGDGEvsfcaievsgevtvkvevikeglekyllktPifelgpveprfs..ewlivegisvdeai...kea......vl.......datiayrkavLnaieyle.kfgykreqaylllsvapveg...ivdipnavatlripteifee 368
                 + +  + nr hp ip    ++pg+++ ++t +a+   +k++d    + v+ +++t   h+l Gp+ ++ga +gD +++ ild  +++++    g + +++G G+l d  e+ + + w+       ++ +  +s   p+v +p  +++G++ v p++++++   +re   + + g  ++   + +      +            a+e +rTi p    Gn D++ +  gs+ ++  fv+G +++iGD+H  qGDGEv+++aie+ +ev + v++ik     y+l +P    g   + ++  ew+ ++g+  +e +    ++      ++       ++ +a r+a+L+ i++l    gy+ +q + l+s  ++ +   +vd p   + + +p +if+ 
  MMETSP0890-20130614|4303_1 128 NTD--CMNRLHPAIPINVYADPGDIILFDTPAATCD-VKDHDLyeENIVNGANCTaSLHQLAGPLGINGAVAGDKIAITILD--VVPTNW---GWTYTVPGLGFLSDLPEDTYFNWWQplmssdgIHPESWYSDRYPNVSIPYSPFPGLVTVLPDQDIVDSTAAREAFVVSRGGSAAP-AGNTEL-----AypssvcgegGSHADECLRTIAPGAFFGNEDTQRIAPGSTLIVDCFVDGCGIAIGDVHGGQGDGEVCITAIEMEAEVYISVDIIKSDDPRYVLPSPTLIGGSTIKDYTpsEWISFTGFPEKEQGliiPQHatfgseIEnmtfvadNMALAGRNALLHCIQFLTdVLGYSFNQGLTLASAVVDLRvaqVVDKPAIGVEALLPLDIFQG 510
                 444..59**************************987.666665435566778887369************************..788888...788999******************76666666899999***********************************888888774433.222222.....2223334566799***********************************************************************************99999887777779******98655432133333111111121111222567899*********986167**************99999999****************985 PP

>> PF08746.6  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.014        62       3      17 ..      73      87 ..      72      90 .. 0.89
   2 ?    8.4   0.0   0.00041       1.9       7      24 ..     119     136 ..     118     138 .. 0.90
   3 ?   -2.6   0.0       1.2   5.3e+03      12      22 ..     346     356 ..     343     361 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.014
   PF08746.6  3 qCkeiviqgvrCgne 17
                +C  ++++g rCg++
  MMETSP0890-20130614|4303_1 73 TCSWVAAYGKRCGVK 87
                8***********986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00041
   PF08746.6   7 iviqgvrCgnedCeiklH 24 
                 i ++g  Cgn dC  +lH
  MMETSP0890-20130614|4303_1 119 ISAEGTDCGNTDCMNRLH 136
                 6789*************9 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.2
   PF08746.6  12 vrCgnedCeik 22 
                 v C + +C i 
  MMETSP0890-20130614|4303_1 346 VDCFVDGCGIA 356
                 67999999886 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.8e-05     0.084      57     102 ..      12      57 ..       6      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
                 EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
  PF01920.15  57 kqdkeevkeeLeerketlekeiktlekqleklekeleelkeelykk 102
                 ++dk+e++++L+++++ ++ e++ +++q  +++k+l e+ ++ + +
  MMETSP0890-20130614|4303_1  12 SVDKDEIIANLQKQLAAAKDELNHVKEQSNSKKKNLHEYTANGRRR 57 
                 579*********************************9998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       740  (0.0541252); expected 273.4 (0.02)
Passed bias filter:                      665  (0.0486396); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:01.41
# Mc/sec: 888.86
//
Query:       MMETSP0890-20130614|4310_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   44.1   0.3      4e-11   42.5   0.0    2.0  2  PF09111.5  SLIDE
    9.4e-05   22.2   0.0       0.29   11.1   0.0    2.5  2  PF00249.26 Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   5.9e-15     4e-11       1     116 [.      99     219 ..      99     221 .. 0.86
   2 ?   -3.8   0.1       1.3   8.9e+03       7      24 ..     262     279 ..     257     290 .. 0.48

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 5.9e-15
   PF09111.5   1 yekyikrIekgeekiekkkeqekllkkkleqyk.nPlqeLkikYppknkk.......ktyseeeDrflllmvyklGldkeglyekikeeirksplFrFDwflksRteqelsrRvetLlklieke 116
                 +++  + Iekge+k e++  +    k+ +e ++ +  ++L i+++p++++       ++ s+ e r ll+++ ++G+   g+++ i+e+ r+ p+  FD f++s + + ++rR e L+++ +ke
  MMETSP0890-20130614|4310_1  99 WDRTSRLIEKGEKKYEEMAPLFASTKRFVELFSpHAQHQLIIRFTPTSAGfpqfpilTSTSTVEERILLCLLVEYGY---GNWRIIREKYRNAPELMFDSFVQSMDIDAVARRTEALMRAADKE 219
                 77888899************9999999999987234578999977765543333333678999**************...****************************************9998 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.3
   PF09111.5   7 rIekgeekiekkkeqekl 24 
                   ek++++ +k+ ++++ 
  MMETSP0890-20130614|4310_1 262 MFEKMRDDHQKQIDLRSE 279
                 444444444444444333 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   4.2e-05      0.29       2      43 ..      42      82 ..      41      86 .. 0.94
   2 !    8.6   0.0   0.00025       1.7       5      31 ..     159     185 ..     159     190 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.2e-05
                TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHH CS
  PF00249.26  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                g+W+  +   +++a +++G   +++I+ ++g +++ +q++ +
  MMETSP0890-20130614|4310_1 42 GNWSRHDYNNFIKASARYGRYAFDKISIELG-TKSIEQVQKY 82
                79*****************88**********.******9987 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00025
                 -HHHHHHHHHHHHHTTS-.HHHHHHHC CS
  PF00249.26   5 TteEdellvdavkqlGggtWktIartm 31 
                 +t E+ +l+++  ++G g+W+ I ++ 
  MMETSP0890-20130614|4310_1 159 STVEERILLCLLVEYGYGNWRIIREKY 185
                 688******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.78
# Mc/sec: 1096.79
//
Query:       MMETSP0890-20130614|4309_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-08   32.7   0.0    7.2e-08   32.2   0.0    1.2  1  PF10262.4 Rdx family


Domain annotation for each model (and alignments):
>> PF10262.4  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   5.3e-12   7.2e-08      35      71 ..      13      49 ..       4      53 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.3e-12
                EEEE------EEEEE---EEEETTT------HHHHHH CS
   PF10262.4 35 vslqpgtgGaFeVtlngeliwsrkekggfPeakelkq 71
                ++ q+  +GaFe++++++l++s++e+g+ P+a ++++
  MMETSP0890-20130614|4309_1 13 LAAQLVATGAFEIYVDDNLVFSKLETGRLPTASDIVK 49
                7889999*************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.79
# Mc/sec: 254.80
//
Query:       MMETSP0890-20130614|4311_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-76  254.3   0.0    1.6e-75  253.0   0.0    1.6  1  PF04928.12 Poly(A) polymerase central domain
    6.3e-21   74.4   0.0    1.2e-20   73.4   0.0    1.4  1  PF04926.10 Poly(A) polymerase predicted RNA binding domain
    0.00016   21.7   0.1    0.00082   19.5   0.1    2.1  1  PF01909.18 Nucleotidyltransferase domain
     0.0083   14.3   3.6      0.012   13.7   2.5    1.1  1  PF08553.5  VID27 cytoplasmic protein
  ------ inclusion threshold ------
      0.045   12.9  18.7       0.08   12.1  13.0    1.4  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF04928.12  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.0   5.9e-79   1.6e-75       3     241 ..      23     377 ..      21     388 .. 0.96

  Alignments for each domain:
  == domain 1    score: 253.0 bits;  conditional E-value: 5.9e-79
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04928.12   3 klgvtkpistaeptekdleeseeLiealkeeglfeseeekkkreevleklnklvkefvkk...............................................................................................alkevpedldlsddslLknldeksvrslngvrvtdeilklvpnkevFrtaLravklWakrrgiYsnvlgflgGvawaiLvarvcqlyPnasastlvekfFrifsqWkwpePvlLkeieeee.....................lqlkvwdprekksdrahlmpiitPayPsmnsthnvtkstlkvlleelkrakeilkeil 241
                  +g+t+pi +++pt ++ ++s++Lie+l++ g+fes+e ++ r++v++kln++++e+  +                                                                                               +  ++p+ l+++dd lL+nld+  +rslngvrv++++l+lvp+ + Fr aLravk Wa ++g+Ysnvlg lgGv+ aiLv +vcq+yPna+as+++++fFrif +W+wp+Pvl+ +    +                      +   w+pr +++drahl pi+tPa P+mns++n+++  l+ +++elk + e +++i 
  MMETSP0890-20130614|4311_1  23 YFGITPPIDERGPTRAEMASSQALIETLNSLGVFESDEGRAVRQSVIDKLNSVAQEWCVEewiktggsmadapycelrtfgsvrlevhtpdadidvvliaprhctrlaffaslvgklsadpsirsgrvmpvrdaytpviklrcgetdvdllfvslDELRLPSPLNVLDDRLLRNLDQGAIRSLNGVRVAEMLLTLVPDVQIFRLALRAVKRWARAKGLYSNVLGLLGGVNCAILVTFVCQRYPNAAASVILARFFRIFDSWEWPNPVLIAPPAVPPvfdtnknstkdddtpldggmhNRYVAWNPRINPRDRAHLAPIVTPAHPTMNSSYNIGEPQLRAIRDELKLGVENTRRID 377
                 68*******************************************************96669*******************************************************************************************996678999*********************************************************************************************************99988877778888889999******996555669***********************************************999886 PP

>> PF04926.10  Poly(A) polymerase predicted RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   4.4e-24   1.2e-20       1     150 [.     412     536 ..     412     540 .. 0.93

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 4.4e-24
                 -TTTS-S-EEEEEEEE---HHHHHH---HHHHHHHHHHHHHT-----B----SS-EEEEEE-BEETTT----HHHHHSSEEEEEEEEE--B----...SSSS----HHHHHHHHHHHHTSSST---TTTEEEEEEEE------GGGS-TT CS
  PF04926.10   1 dFFekYkhYlqvkasskteeahlkWsGlveSklRlLvqkLErvegialAhpfpkgfervhrveekkdenkeeaseeekeeiytttfyiGLelkekkskegkksldlseaiqeFkeivksweevekkkesmdieikhvkrkdLpddvfeeg 150
                 dFF+ ++hY+q+++++k+ ++ + W  + eS+lR Lv  L++   ++  +p+   +e                +++++++    +f+iGL+++ ++++     +dl+  +++F e v++we+    +  md+e+ hv + +Lp+ v e++
  MMETSP0890-20130614|4311_1 412 DFFHAHRHYVQIDVIAKDDDSLRRWFAWCESRLRGLVVALDTPGYVKA-RPHATPIE----------------HKDSSQQRRIRSFFIGLSFEGHVQH-----IDLTPCVRDFSERVNKWEH---LAGDMDLELDHVLSDQLPSWVWEHQ 536
                 7****************************************9988887.********................67888999999**********7654.....****************999...9******************997766 PP

>> PF01909.18  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1     3e-07   0.00082      16      47 ..      98     136 ..      93     200 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3e-07
                 EEEEE-ETTTT---TT-EEEEEEEESTTSHH.......H CS
  PF01909.18  16 kvvlfGSyarGtllpgSDiDllvvlpkpldr.......i 47 
                 ++  fGS++   ++p+ DiD++++ p++  r       +
  MMETSP0890-20130614|4311_1  98 ELRTFGSVRLEVHTPDADIDVVLIAPRHCTRlaffaslV 136
                 6778************************87655444430 PP

>> PF08553.5  VID27 cytoplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   2.5   4.4e-06     0.012     101     248 ..     491     638 ..     487     649 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.4e-06
   PF08553.5 101 eelklrvetkedgeavlaWkdlsGdegdkfeFvidesvslsevekFeltvyrCqyErkyrksaeeateedLkefeykeekeekkakeeeetvddelesadleevetsedeeketsd.lvedaedeke.ekakakkslsaeeakeepkake 248
                 ++++l  + ++  e+v  W+ l Gd +  ++ v+++++++    + + t y+      y++++++ t+ +L++ + +  ++ +++++ ++ +d ++++++ e+ e+++d+  +    ++ +++++ + ++++++ +++++ ++++p++  
  MMETSP0890-20130614|4311_1 491 QHIDLTPCVRDFSERVNKWEHLAGDMDLELDHVLSDQLPSWVW-EHQRTWYHIAQHDDYTTTNKKSTNPELTNNDDSL-STSNSTNTTSIATDTTQKNTATENGEDRADKAPTPPPpSTRPEKSDRQrTRHREEDESQSSMQHDTPQTAR 638
                 56778888999999************************97765.57999**********************9988774.55555666666666666666666666666665554441333344333303333334555555566666554 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  13.0   2.9e-05      0.08     176     333 ..     545     701 ..     457     710 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-05
                 ....................XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX....................................................XXXXXXXXXXXHHHHHH.. CS
  PF04652.11 176 esldssslpgeassasaspksaeesseslpsdplsa.edsdssapgldadeasaspseapssspgvpsfp..spdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplqsv 333
                  +  + +++++ +++  +++++ + s+s + +++++ ++++++a++  +d+a ++p+++p s+++++s    +   +e+++++s++ ++P+ a  n +++ s +P+s e+ +    +++  +++++   +++s++++p+++ + P  + +s+a+++++ ++
  MMETSP0890-20130614|4311_1 545 HDDYTTTNKKSTNPELTNNDDSLSTSNSTNTTSIATdTTQKNTATENGEDRADKAPTPPPPSTRPEKSDRqrTRHREEDESQSSMQHDTPQTARVNRTNRSSANPSSIETIP----NANGEQNEQKIGEEISSPLSSPAKKARGPDISDDSQASHDKPIQM 701
                 3333334444444455566667777777788888888888888888888888888888888888888886556666777777999999998888888888888888887222....234445555566667777888888888899998888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.17u 0.44s 00:00:01.61 Elapsed: 00:00:01.43
# Mc/sec: 1191.48
//
Query:       MMETSP0890-20130614|4318_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-16   58.4   3.9      5e-16   58.1   2.7    1.1  1  PF01779.12 Ribosomal L29e protein family
     0.0016   17.8   6.1     0.0016   17.8   4.2    1.1  1  PF03066.10 Nucleoplasmin
     0.0026   16.9   6.1     0.0026   16.9   4.2    1.2  1  PF05432.6  Bone sialoprotein II (BSP-II)
     0.0052   17.0   2.0     0.0055   16.9   1.4    1.2  1  PF00428.14 60s Acidic ribosomal protein
     0.0067   15.5   4.2     0.0067   15.5   2.9    1.1  1  PF01056.13 Myc amino-terminal region
  ------ inclusion threshold ------
      0.039   12.3   7.3      0.032   12.6   5.0    1.1  1  PF03344.10 Daxx Family
      0.072   12.2   6.3      0.065   12.3   4.4    1.1  1  PF06524.7  NOA36 protein
      0.086   10.4   4.2      0.081   10.5   2.9    1.0  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
      0.088   10.5   7.3       0.07   10.9   5.1    1.0  1  PF04147.7  Nop14-like family
       0.12   11.7   7.0        0.1   11.9   4.8    1.1  1  PF09184.6  PPP4R2
       0.19   11.4   6.3       0.18   11.4   4.4    1.2  1  PF08595.6  RXT2-like, N-terminal
       0.36    9.3  10.4       0.35    9.3   7.2    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        1.2    6.9   8.4        1.3    6.8   5.8    1.1  1  PF02724.9  CDC45-like protein
        1.3    8.4  10.9        1.5    8.3   7.6    1.1  1  PF04546.8  Sigma-70, non-essential region
        2.4    7.0  13.0        2.8    6.9   9.0    1.1  1  PF06213.7  Cobalamin biosynthesis protein CobT


Domain annotation for each model (and alignments):
>> PF01779.12  Ribosomal L29e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   2.7   5.5e-19     5e-16       1      40 []       3      42 ..       3      42 .. 0.99

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 5.5e-19
  PF01779.12  1 KsKNhTnHNqnrKaHRNGIkkpkkhryeSlkGvdpkflrN 40
                K+KNhT+ N+  K H NGI+k  + ry+S+kG+dpkflrN
  MMETSP0890-20130614|4318_1  3 KQKNHTARNNTVKWHANGITKVPNFRYKSTKGMDPKFLRN 42
                9**************************************9 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   4.2   1.7e-06    0.0016     115     140 ..      58      83 ..       6      84 .] 0.61

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.7e-06
                 ...----XXXXXXXXXXXXXXXXXXX CS
  PF03066.10 115 ldeeddeedeeeeddeedddeeeeee 140
                 ++e+dd++d++++++ee++ eeeeee
  MMETSP0890-20130614|4318_1  58 SAESDDDDDDDDDEEEEEEGEEEEEE 83 
                 22233333333333333333333332 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   4.2   2.9e-06    0.0026     114     151 ..      46      82 ..       5      84 .] 0.64

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.9e-06
   PF05432.6 114 aalqlpkkaGdigkkaakedesdedeeeeeeeeeeeea 151
                 a  + +  +G +   +  +d+ d+deeeeee  eeee+
  MMETSP0890-20130614|4318_1  46 AKKWNNVEGGRASAESDDDDDDDDDEEEEEEG-EEEEE 82 
                 44555556664444444444444444444322.22222 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.4     6e-06    0.0055      50      82 ..      53      84 .]      14      84 .] 0.55

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6e-06
  PF00428.14 50 aaaaaaaaaaaaaaaaaeeekkeeeeeEeeddd 82
                 +  a+a+  ++  +  +ee++ee e Eee++d
  MMETSP0890-20130614|4318_1 53 EGGRASAESDDDDDDDDDEEEEEEGE-EEEEED 84
                34445555555555555555555544.344444 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.9   7.3e-06    0.0067     208     244 ..      47      83 ..      10      84 .] 0.67

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.3e-06
  PF01056.13 208 pelvlrtspnsssssgedseseeeeeeeeeeeeeeei 244
                 +++   ++  +s+ s++d +++++eeeeee eeeee 
  MMETSP0890-20130614|4318_1  47 KKWNNVEGGRASAESDDDDDDDDDEEEEEEGEEEEEE 83 
                 3444445555777777777767777777777777764 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.0   3.5e-05     0.032     443     473 ..      57      83 ..       4      84 .] 0.57

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-05
  PF03344.10 443 ekaekeedeeddekeeedkseeeeeeeeeee 473
                  +ae+++d++d  +++  ++eeee+eeeeee
  MMETSP0890-20130614|4318_1  57 ASAESDDDDDD--DDD--EEEEEEGEEEEEE 83 
                 22333333333..222..2222222222222 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.4   7.2e-05     0.065     257     294 ..      45      82 ..       6      84 .] 0.66

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.2e-05
   PF06524.7 257 ssdkygdaksvnygyesdddeeesaedydeeededddd 294
                  ++k  +++++  + esddd+++++++++eee e++++
  MMETSP0890-20130614|4318_1  45 YAKKWNNVEGGRASAESDDDDDDDDDEEEEEEGEEEEE 82 
                 34556667777777777777776655555544443332 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.9   8.9e-05     0.081     860     908 ..      35      83 ..       8      84 .] 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.9e-05
   PF05086.7 860 lvknfieklkklnklteleeylisefseaeddkedededededEdeded 908
                 +  +f+++ + ++k +++e    s+ s+ +dd++d++e+e+e E+e+e+
  MMETSP0890-20130614|4318_1  35 MDPKFLRNTRYAKKWNNVEGGRASAESDDDDDDDDDEEEEEEGEEEEEE 83 
                 5678999999999999999987777644443333333333333333322 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.1   7.7e-05      0.07     343     368 ..      57      82 ..       4      84 .] 0.58

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.7e-05
   PF04147.7 343 egvededeeeddddeeeeeedvdede 368
                  ++e++d+++ddddeeeeee ++e+e
  MMETSP0890-20130614|4318_1  57 ASAESDDDDDDDDDEEEEEEGEEEEE 82 
                 22333333333333332222222222 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.8   0.00011       0.1     248     274 ..      57      83 ..       3      84 .] 0.61

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   PF09184.6 248 kkaddeedddedsdyieekelkedeee 274
                  +a++++ddd+d+d+ ee+e +e+eee
  MMETSP0890-20130614|4318_1  57 ASAESDDDDDDDDDEEEEEEGEEEEEE 83 
                 233333333333333345555555554 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.4    0.0002      0.18      49      81 ..      47      82 ..       3      84 .] 0.56

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0002
   PF08595.6 49 k...kkepridedenelddededdeeeededeeeae 81
                k   + e    + e+++dd+d+ddeeee+e eee+e
  MMETSP0890-20130614|4318_1 47 KkwnNVEGGRASAESDDDDDDDDDEEEEEEGEEEEE 82
                223433333334444444444444544444444444 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.2   0.00038      0.35      49      74 ..      57      82 ..      21      84 .] 0.52

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00038
   PF10446.4 49 aleeedededdeeddddeDedddddd 74
                a  e d+d+dd++d+++e+e +++++
  MMETSP0890-20130614|4318_1 57 ASAESDDDDDDDDDEEEEEEGEEEEE 82
                33333333333333322222222222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.8    0.0014       1.3     121     155 ..      45      81 ..      26      84 .] 0.42

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0014
   PF02724.9 121 yealvemkeeee....eesdedsdseddeeeeessasek 155
                 y +  +++  e+     esd+d+d++ddeeeee+ ++e+
  MMETSP0890-20130614|4318_1  45 YAKKWNNV--EGgrasAESDDDDDDDDDEEEEEEGEEEE 81 
                 33332222..22333333333333333333333333322 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.6    0.0016       1.5      47      70 ..      57      81 ..      34      84 .] 0.43

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0016
   PF04546.8 47 ddeeeeeddddddededeee.esee 70
                +++e+++dddddd++e+eee e+ee
  MMETSP0890-20130614|4318_1 57 ASAESDDDDDDDDDEEEEEEgEEEE 81
                3333333322333333333222222 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.0     0.003       2.8     219     246 ..      56      84 .]      37      84 .] 0.62

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.003
   PF06213.7 219 sdseekr.dedddkedeeddaseeeesgd 246
                   s+e++ d+ddd+++ee++++eeee++d
  MMETSP0890-20130614|4318_1  56 RASAESDdDDDDDDDEEEEEEGEEEEEED 84 
                 44555553466666667777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|4320_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-39  133.1   0.1      4e-39  132.8   0.0    1.1  1  PF03912.9 Psb28 protein


Domain annotation for each model (and alignments):
>> PF03912.9  Psb28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.8   0.0   2.9e-43     4e-39       1     108 []      50     160 ..      50     160 .. 0.94

  Alignments for each domain:
  == domain 1    score: 132.8 bits;  conditional E-value: 2.9e-43
                 EES----------EEEE----------EEEEEES-GG..GTSS-G.G..G----EEE-----EE---EE-EE----EEEEEEEE---SSHHHHHHHHHHHH---------- CS
   PF03912.9   1 iqfikGidEevvpevrltrsrdgskgtalftfekpka..lekess.ekkeitglyliDeEGelstrevkakfvngklkaveatyelkseeeweRfmRFmerYaeanglgys 108
                 iqf+ G+ E  vp+v+ltrs d+++gta+f+f++p+   +eke++  k+ it+++++DeEG+++t +v+a+fvng++k+++a+ye+ s+++w+RfmRFm rYaeangl+++
  MMETSP0890-20130614|4320_1  50 IQFYPGVYEPNVPDVKLTRSVDAQTGTATFYFDEPSFfnIEKEEDiPKEAITAMTMVDEEGSMQTANVNARFVNGQPKSIQAKYEMLSPSDWDRFMRFMTRYAEANGLSFN 160
                 9***********************************93345555567899**********************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 626.14
//
Query:       MMETSP0890-20130614|4321_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-14   52.3   0.0    1.3e-10   41.3   0.0    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    3.5e-11   42.8   0.3    1.7e-09   37.5   0.0    2.4  2  PF13857.1  Ankyrin repeats (many copies)
    2.6e-09   36.2   0.6    3.6e-05   23.2   0.0    3.1  3  PF00023.25 Ankyrin repeat
    8.2e-08   32.4   0.0     0.0017   18.6   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    3.9e-07   29.5   0.1     0.0011   18.9   0.0    3.1  3  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   4.6e-14   1.3e-10      15      86 ..      91     168 ..      82     168 .. 0.87
   2 !   16.3   0.0   2.9e-06     0.008      42      80 ..     157     195 ..     155     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 4.6e-14
   PF12796.2  15 lLlekgadvdlget.......pLh.lAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                 +Ll+k  d+            pLh +  ++ n + v++L+++gad++a d +g+tpLh  ++n+ +  +klLle+gad+n
  MMETSP0890-20130614|4321_1  91 QLLQKFPDLAN--DistggalPLHnCGMSRKNQAQVSILVQHGADIEAVDTYGYTPLHRMASNNLAIGCKLLLEAGADPN 168
                 57777777773..33446666***888999************************************************97 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.9e-06
   PF12796.2  42 vklLleagadvnakdkegntpLhlAvrnghlelvklLle 80 
                 +klLleagad+n +  +g+tp  +A +++ ++++++L +
  MMETSP0890-20130614|4321_1 157 CKLLLEAGADPNFTGSSGETPAQVAQSSHAIDVLQVLKD 195
                 79******************************9999865 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.041   1.1e+02       1      22 [.      92     113 ..      92     114 .. 0.93
   2 !   37.5   0.0   6.1e-13   1.7e-09       1      56 []     127     181 ..     127     181 .. 0.98

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.041
   PF13857.1   1 LlehgpadvnatdeggntpLhl 22 
                 Ll+++p+ +n+  +gg  pLh+
  MMETSP0890-20130614|4321_1  92 LLQKFPDLANDISTGGALPLHN 113
                 89999****************7 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 6.1e-13
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 L++hg ad+ a d++g+tpLh  a+++ +  ++lLl++gad+n + s+g+t+ ++A
  MMETSP0890-20130614|4321_1 127 LVQHG-ADIEAVDTYGYTPLHRMASNNLAIGCKLLLEAGADPNFTGSSGETPAQVA 181
                 89***.**********************************************9988 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00017      0.47      14      32 ..     120     138 ..     107     139 .. 0.84
   2 !   23.2   0.0   1.3e-08   3.6e-05       1      30 [.     140     169 ..     140     172 .. 0.95
   3 ?   -2.8   0.0       2.3   6.3e+03      24      32 ..     211     219 ..     207     219 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHTTSSTTHBH CS
  PF00023.25  14 nlevvklLlsqGAdlnaqd 32 
                 n   v+ L+++GAd+ a+d
  MMETSP0890-20130614|4321_1 120 NQAQVSILVQHGADIEAVD 138
                 67779************98 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.3e-08
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlna 30 
                 +G+TPLH  a+++ +  +klLl++GAd+n 
  MMETSP0890-20130614|4321_1 140 YGYTPLHRMASNNLAIGCKLLLEAGADPNF 169
                 69**************************95 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.3
                 TTSSTTHBH CS
  PF00023.25  24 qGAdlnaqd 32 
                 +GA++ +++
  MMETSP0890-20130614|4321_1 211 AGASVSIVN 219
                 69*999876 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.3e-07    0.0017       4      44 ..     110     151 ..     107     156 .. 0.85
   2 !   12.6   0.0     5e-05      0.14      11      51 ..     150     191 ..     147     193 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.3e-07
   PF13637.1   4 aLhyaai.sgrlelvklLlekgidinrtdesGntaLhiAalr 44 
                 +Lh++ +   +   v  L+++g+di ++d +G t+Lh+ a++
  MMETSP0890-20130614|4321_1 110 PLHNCGMsRKNQAQVSILVQHGADIEAVDTYGYTPLHRMASN 151
                 6888888555566699*********************98776 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 5e-05
   PF13637.1  11 sgrlel.vklLlekgidinrtdesGntaLhiAalrgnieilk 51 
                 s++l + +klLle g+d+n t +sG+t+ ++A +   i++l+
  MMETSP0890-20130614|4321_1 150 SNNLAIgCKLLLEAGADPNFTGSSGETPAQVAQSSHAIDVLQ 191
                 66666669********************99996555566666 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0029       7.8       5      29 ..     110     135 ..     107     136 .. 0.82
   2 !   18.9   0.0   3.9e-07    0.0011       1      29 [.     140     168 ..     140     169 .. 0.92
   3 ?   -1.5   0.0       1.5   4.1e+03       2      23 ..     174     195 ..     173     197 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0029
   PF13606.1   5 pLh.lAasngrielveaLlengadin 29 
                 pLh + +s+++ + v++L+++gadi 
  MMETSP0890-20130614|4321_1 110 PLHnCGMSRKNQAQVSILVQHGADIE 135
                 77744588999999**********96 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 3.9e-07
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                 +G+TpLh  asn+    +++Lle+gad+n
  MMETSP0890-20130614|4321_1 140 YGYTPLHRMASNNLAIGCKLLLEAGADPN 168
                 8**********987767**********99 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.5
   PF13606.1   2 GnTpLhlAasngrielveaLle 23 
                 G+Tp  +A s+  i++++ L +
  MMETSP0890-20130614|4321_1 174 GETPAQVAQSSHAIDVLQVLKD 195
                 6677666655556888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 1350.67
//
Query:       MMETSP0890-20130614|4322_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-49  165.9   0.0    1.6e-48  165.0   0.0    1.4  1  PF01008.12 Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> PF01008.12  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   1.1e-52   1.6e-48       6     281 .]      11     322 ..       7     322 .. 0.91

  Alignments for each domain:
  == domain 1    score: 165.0 bits;  conditional E-value: 1.1e-52
                 HHHHHTTTHHHCCHHTCCHTSTHHHHHHHHHHHHHHHHT...SST......S-HHHHHHHHHHHH..HHCCTT-SSHHHHHHHHHHHHHHHHHHHHHHHHH---TGGCCH-SB-EEEEES----TSHHHHHHHHCCB--EEEEE--TTTT---SHHHHHHHHT-EEEEE-GGGHHHHHHHTECEEEE---EEETTE-EEEE---HHHHHHHHHTT-EEEEB--GGGBETTS--GGGS---B--THHHHBB---BCSST.............................T-EE--BSEEEEEGGG-SEEB-----B-S CS
  PF01008.12   6 paiaiaalevllevikdaktskvaeLkeklrkaidlLkk...arP......tavslgnairrllk..iselksssdvkeakksliekikelikeieeadekigdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqGrltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellvvtgeriaee.............................elkvvnpafDvtPpelItliITevGvltp 281
                  a+ +aa++vll vi+++++ +++ L e+lr a +++++     P      t++s+ + ++ +l+   + + + +d +e+kk+++++ ++++k    ++  i+d ++ +i+d+ ++l++++s++v+ +l+ aa+ k +++V    +r +  G+ +akeL+q g+pv++i d a+++++++  + +++GA++++e G+++nkiGT+  A++Ak+++ pv+v+aes+kf + ++l + ++i  + +e   ++t  +  ++                             +   ++p +D+tPpe+I+l++T++Gvltp
  MMETSP0890-20130614|4322_1  11 HAVPVAAIQVLLGVIERSSALTMHGLDEELRLARAYMIAyseGAPtelggrTSISVVSGCDLFLRhvTRTYLEFADFEECKKEILRRGQSFAKLSRSSRDRIADLGHPFISDESVVLVHGHSRVVITLLQRAARCK-RISV--IATRADGAGNFIAKELKQLGVPVKIIADLAIGFFIET-ASLLLLGAEGVVETGGVVNKIGTLPTAIMAKAAKLPVYVAAESYKFARFFPLRQSDLIAAGRQEYAHNRTLLQQHDHllkdkdqdggikkdptnefenqnytdpfsSDFPHHPPVDYTPPEYIDLLFTDIGVLTP 322
                 578899********************999999999997622234533333368999999999999988888999*********************************************************99854.5555..56899********************************.*********************************************************9999888888888888777799999***********************8777899*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:01.06
# Mc/sec: 755.08
//
Query:       MMETSP0890-20130614|4325_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:01.09
# Mc/sec: 1075.06
//
Query:       MMETSP0890-20130614|4333_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-08   31.5   8.6     0.0024   17.3   0.8    5.7  4  PF12799.2  Leucine Rich repeats (2 copies)
    4.4e-07   28.9  14.5       0.88    9.9   0.1    8.3  7  PF13504.1  Leucine rich repeat
    4.3e-05   22.8  16.2        1.5    8.9   0.1    7.5  7  PF00560.28 Leucine Rich Repeat
    0.00035   20.2  12.9       0.55   10.3   0.1    6.7  8  PF13516.1  Leucine Rich repeat
     0.0011   18.4  11.2      0.068   12.8   0.4    4.7  5  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   8.7e-07    0.0024       4      39 ..       6      63 ..       4      70 .. 0.88
   2 !   14.3   1.0   7.8e-06     0.021       1      34 [.      47      85 ..      47      91 .. 0.88
   3 !    6.9   0.0    0.0016       4.3       3      34 ..     228     261 ..     207     269 .. 0.70
   4 ?    2.5   0.0     0.037     1e+02       3      13 ..     281     291 ..     280     300 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8.7e-07
   PF12799.2  4 evLdLsnNnIkdlppelan......................LpnLktLnLsnNpis.dl 39
                e L  ++++++++p  l+n                      Lp+Lk+L+Ls+Np+  d+
  MMETSP0890-20130614|4333_1  6 ERLRCIDCRLQQIPI-LKNlvaltlrrcgltlmalatdgqvLPSLKELDLSSNPLAlDV 63
                789999999999999.999999999999999999999999**************97555 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.8e-06
   PF12799.2  1 tnLevLdLsnNnIk.dlppe..lanL..pnLktLnLsnN 34
                ++L++LdLs+N++  d++++  l +L  + L++L+Ls +
  MMETSP0890-20130614|4333_1 47 PSLKELDLSSNPLAlDVSNTtgLQRLvtSRLRSLDLSDC 85
                68***********999999889*9996447******976 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0016
   PF12799.2   3 LevLdLsnNnIkdlppe..lanLpnLktLnLsnN 34 
                 L+ L  +++ ++ l+    + + p+L++L+++ N
  MMETSP0890-20130614|4333_1 228 LRALRARRCALSALDVLgiIHSIPSLRLLDVADN 261
                 455555666778777634477999*****99988 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.037
   PF12799.2   3 LevLdLsnNnI 13 
                 L++LdLs++n+
  MMETSP0890-20130614|4333_1 281 LRFLDLSDSNL 291
                 89999998776 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   2.9e+02       4      17 .]       6      19 ..       4      19 .. 0.86
   2 ?    3.4   0.1     0.045   1.2e+02       2      14 ..      23      35 ..      22      40 .. 0.89
   3 !    9.9   0.1   0.00032      0.88       1      13 [.      47      59 ..      47      72 .. 0.89
   4 !    6.5   0.1    0.0042        11       1      12 [.      75      86 ..      75      91 .. 0.87
   5 ?    1.6   0.0      0.18   4.8e+02       3      11 ..     209     217 ..     207     242 .. 0.67
   6 ?    1.3   0.0      0.23   6.3e+02       1      11 [.     251     261 ..     251     265 .. 0.89
   7 ?    5.0   0.0     0.013        36       2      13 ..     280     291 ..     280     294 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
   PF13504.1  4 keLdLsgnrLtsLP 17
                ++L+  ++rL+++P
  MMETSP0890-20130614|4333_1  6 ERLRCIDCRLQQIP 19
                6788999*****99 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.045
   PF13504.1  2 nLkeLdLsgnrLt 14
                nL  L L++++Lt
  MMETSP0890-20130614|4333_1 23 NLVALTLRRCGLT 35
                8999*******98 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00032
   PF13504.1  1 pnLkeLdLsgnrL 13
                p+LkeLdLs+n+L
  MMETSP0890-20130614|4333_1 47 PSLKELDLSSNPL 59
                79*********97 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0042
   PF13504.1  1 pnLkeLdLsgnr 12
                ++L+ LdLs++ 
  MMETSP0890-20130614|4333_1 75 SRLRSLDLSDCC 86
                58********95 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.18
   PF13504.1   3 LkeLdLsgn 11 
                 L+ Ld+s+n
  MMETSP0890-20130614|4333_1 209 LQALDISDN 217
                 677888777 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.23
   PF13504.1   1 pnLkeLdLsgn 11 
                 p+L+ Ld+++n
  MMETSP0890-20130614|4333_1 251 PSLRLLDVADN 261
                 79******998 PP

  == domain 7    score: 5.0 bits;  conditional E-value: 0.013
   PF13504.1   2 nLkeLdLsgnrL 13 
                 +L++LdLs+ +L
  MMETSP0890-20130614|4333_1 280 RLRFLDLSDSNL 291
                 69******9876 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.03        81       2      22 .]       5      24 ..       4      24 .. 0.87
   2 ?    0.9   0.0      0.24   6.5e+02       1      13 [.      23      35 ..      23      46 .. 0.89
   3 !    8.9   0.1   0.00056       1.5       1      15 [.      48      63 ..      48      72 .. 0.81
   4 ?    5.1   0.2      0.01        28       1      10 [.      76      85 ..      76      87 .. 0.89
   5 ?    4.5   0.2     0.016        45       2      13 ..     209     221 ..     208     256 .. 0.78
   6 ?   -0.6   0.0      0.79   2.2e+03       1      11 [.     252     262 ..     252     270 .. 0.83
   7 ?    4.7   0.0     0.014        38       1      12 [.     280     291 ..     280     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.03
                ESEEEETSSBCBCHHHHHHHH CS
  PF00560.28  2 LeeLdLsgNnltslppslsnL 22
                 e+L   +++l+++p  l+nL
  MMETSP0890-20130614|4333_1  5 VERLRCIDCRLQQIPI-LKNL 24
                57889999*******9.9997 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.24
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                nL  L L+++ lt
  MMETSP0890-20130614|4333_1 23 NLVALTLRRCGLT 35
                7889******998 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00056
                TESEEEETSSBCB.CH CS
  PF00560.28  1 nLeeLdLsgNnlt.sl 15
                +L+eLdLs+N+l  ++
  MMETSP0890-20130614|4333_1 48 SLKELDLSSNPLAlDV 63
                69********997665 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.01
                TESEEEETSS CS
  PF00560.28  1 nLeeLdLsgN 10
                +L++LdLs++
  MMETSP0890-20130614|4333_1 76 RLRSLDLSDC 85
                59*******9 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.016
                 ESEEEETSS.BCB CS
  PF00560.28   2 LeeLdLsgN.nlt 13 
                 L+ Ld+s+N +++
  MMETSP0890-20130614|4333_1 209 LQALDISDNvHIS 221
                 899******9998 PP

  == domain 6    score: -0.6 bits;  conditional E-value: 0.79
                 TESEEEETSSB CS
  PF00560.28   1 nLeeLdLsgNn 11 
                 +L+ Ld+ +N 
  MMETSP0890-20130614|4333_1 252 SLRLLDVADNI 262
                 6999***9995 PP

  == domain 7    score: 4.7 bits;  conditional E-value: 0.014
                 TESEEEETSSBC CS
  PF00560.28   1 nLeeLdLsgNnl 12 
                 +L+ LdLs+ nl
  MMETSP0890-20130614|4333_1 280 RLRFLDLSDSNL 291
                 59*******988 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.082   2.2e+02       1      15 [.      21      35 ..      21      41 .. 0.88
   2 !   10.3   0.1    0.0002      0.55       1      14 [.      46      59 ..      46      69 .. 0.91
   3 !    5.6   0.1    0.0069        19       2      12 ..      75      85 ..      74      91 .. 0.89
   4 ?   -3.6   0.0         5   1.4e+04       4      12 ..     107     115 ..     107     115 .. 0.82
   5 ?   -3.1   0.0       4.4   1.2e+04       7      16 ..     136     145 ..     135     151 .. 0.75
   6 ?    2.5   0.0     0.067   1.8e+02       3      12 ..     208     217 ..     206     243 .. 0.86
   7 ?   -2.0   0.0       1.9   5.2e+03       2      12 ..     251     261 ..     251     265 .. 0.85
   8 ?    2.2   0.0     0.083   2.3e+02       4      18 ..     281     296 ..     280     302 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.082
   PF13516.1  1 lknLtsLdLsnNqig 15
                lknL  L L +++++
  MMETSP0890-20130614|4333_1 21 LKNLVALTLRRCGLT 35
                79**********997 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0002
   PF13516.1  1 lknLtsLdLsnNqi 14
                l++L++LdLs+N++
  MMETSP0890-20130614|4333_1 46 LPSLKELDLSSNPL 59
                79**********97 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0069
   PF13516.1  2 knLtsLdLsnN 12
                + L+sLdLs++
  MMETSP0890-20130614|4333_1 75 SRLRSLDLSDC 85
                579*******9 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 5
   PF13516.1   4 LtsLdLsnN 12 
                 L+ L+L  N
  MMETSP0890-20130614|4333_1 107 LERLCLAAN 115
                 889999876 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 4.4
   PF13516.1   7 LdLsnNqigd 16 
                 LdL + +++d
  MMETSP0890-20130614|4333_1 136 LDLRYAGVSD 145
                 7888777766 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.067
   PF13516.1   3 nLtsLdLsnN 12 
                  L+ Ld+s+N
  MMETSP0890-20130614|4333_1 208 VLQALDISDN 217
                 6999****99 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 1.9
   PF13516.1   2 knLtsLdLsnN 12 
                 ++L+ Ld+ +N
  MMETSP0890-20130614|4333_1 251 PSLRLLDVADN 261
                 689999*9999 PP

  == domain 8    score: 2.2 bits;  conditional E-value: 0.083
   PF13516.1   4 LtsLdLsn.NqigdeG 18 
                 L+ LdLs+ N i  e+
  MMETSP0890-20130614|4333_1 281 LRFLDLSDsNLIAPED 296
                 899****845565555 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.4   0.00019      0.51      24      61 .]      21      59 ..       4      59 .. 0.69
   2 !   10.3   1.7   0.00015      0.41      24      58 ..      46      84 ..      22      85 .. 0.61
   3 !   12.8   0.4   2.5e-05     0.068       1      47 [.      47     100 ..      47     105 .. 0.66
   4 !    6.6   0.1    0.0021       5.8       3      59 ..     209     261 ..     207     263 .. 0.81
   5 !    4.9   0.4    0.0069        19       3      60 ..     228     290 ..     226     292 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
   PF13855.1 24 lsnLkvLdLsgnnlksisp.eafkgLpsLreLnLsgNrl 61
                l+nL  L L ++ l+ +      + LpsL+eL+Ls+N+l
  MMETSP0890-20130614|4333_1 21 LKNLVALTLRRCGLTLMALaTDGQVLPSLKELDLSSNPL 59
                557777777777777442213347799999999999986 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00015
   PF13855.1 24 lsnLkvLdLsgnnl.ksisp.eafkgLp..sLreLnLsg 58
                l++Lk+LdLs+n l   +s    ++ L+  +Lr+L+Ls+
  MMETSP0890-20130614|4333_1 46 LPSLKELDLSSNPLaLDVSNtTGLQRLVtsRLRSLDLSD 84
                678888888888775455441346666333677777765 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 2.5e-05
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkgl.....snLkvLdLs.gnnl..ksispeafkg 47 
                 p+LkeLdLs+N    ++ +   gl     s+L++LdLs +++    ++s+ +f++
  MMETSP0890-20130614|4333_1  47 PSLKELDLSSN-PLALDVSNTTGLqrlvtSRLRSLDLSdCCSDgcPEVSTAIFDS 100
                 7999*****99.4444444444444449999999999966666333666666665 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0021
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp.eafkgLpsLreLnLsgN 59 
                 L+ Ld+s+N   +    ++ +++ L+ L   +++l+ ++  +++++ psLr L++ +N
  MMETSP0890-20130614|4333_1 209 LQALDISDN--VH---ISLTNMNTLRALRARRCALSALDVlGIIHSIPSLRLLDVADN 261
                 677777777..34...478999999999999999999966589999999999999887 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.0069
   PF13855.1   3 LkeLdLsnNrlkvipd.gaFkglsnLkvLdLsgnnl..ksi..speafkgLp.sLreLnLsgNr 60 
                 L+ L  +++ l+ ++  g+ ++ ++L+ Ld   +n+  +s+   ++++++ + +Lr L+Ls+++
  MMETSP0890-20130614|4333_1 228 LRALRARRCALSALDVlGIIHSIPSLRLLDVA-DNIveSSVaaGDKWLDDAVlRLRFLDLSDSN 290
                 77888888888888888899999999999999.6664545522334666654367777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.78
# Mc/sec: 1063.00
//
Query:       MMETSP0890-20130614|4331_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:01.01
# Mc/sec: 970.41
//
Query:       MMETSP0890-20130614|4339_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   37.8   0.0    1.7e-09   37.2   0.0    1.2  1  PF10294.4 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.2e-13   1.7e-09      66     146 ..      59     142 ..      54     163 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.2e-13
   PF10294.4  66 lllpeakviltDle.....e...llellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdl 146
                 +l  +a+v+ltDl+     e   ++  lk+ni +nk  l+  v+a++LdW +++  d  ++e +D+ilaaD++Y+ + le L  t+++ 
  MMETSP0890-20130614|4339_1  59 SL-CNARVTLTDLDgtddnEpttIVSTLKRNILANK--LELLVQARALDWCDRK--DGDDTEVFDFILAADVIYDFSILESLCFTIRER 142
                 44.6788999988622222122256789******88..************9988..6667889*******************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.51s 00:00:00.86 Elapsed: 00:00:00.88
# Mc/sec: 596.37
//
Query:       MMETSP0890-20130614|4345_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-33  115.0   0.0    2.2e-33  114.8   0.0    1.0  1  PF04573.7 Signal peptidase subunit


Domain annotation for each model (and alignments):
>> PF04573.7  Signal peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   1.6e-37   2.2e-33      56     174 ..      21     140 ..       3     141 .] 0.87

  Alignments for each domain:
  == domain 1    score: 114.8 bits;  conditional E-value: 1.6e-37
   PF04573.7  56 ksrkkkdlasltfdlsadLsklFnWNvKqlfvYltaeYeteenalnqVvlwDkIikrke...eakldlkdvkskYsflddgnglkgnknvtltLswnviPkvGllalvegagklsiklpkey 174
                  s+   d a l+fdl+adL ++F WN+Kql+v+++aeYe+++n+lnqV+lwDkI+++++   +a l+  ++  kY ++d++ +l++   ++l L w+ +P +G l++ ++ g  s++lp++y
  MMETSP0890-20130614|4345_1  21 RSHGGVDRALLSFDLEADLRPAFHWNLKQLYVFVLAEYESKKNVLNQVILWDKIVQASDgidSALLKQDSTYVKYALVDQSTELRN-STINLSLMWDHMPLTGRLFMERAPG-SSFHLPTKY 140
                 4566789*************************************************98633267777888899*************.**********************995.689999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:01.29
# Mc/sec: 261.93
//
Query:       MMETSP0890-20130614|4358_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-23   81.2   0.1    2.7e-22   78.5   0.1    1.9  1  PF08853.6 Domain of unknown function (DUF1823)


Domain annotation for each model (and alignments):
>> PF08853.6  Domain of unknown function (DUF1823)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.1     2e-26   2.7e-22       2     113 ..      20     144 ..      19     146 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 2e-26
                 --HHHHHHHHHT-S-HHHHHHHHHHH----EETTTTEE--TTS-HH.HHTT-SS---TTT.--H...........HHHHHHHTS-GGGTTHHHHT-...------GGG--HHHHHHHHHHHHHHHHH CS
   PF08853.6   2 lskelllailedrisDafvaelvwerlgyrkekesekwkasevtpeaWreeypeaPevie.erp...........asvkLtrsipkekkqllkeql...gfkGykigeltPrrtrratavnWLlayl 113
                 l++e l++i+ ++++D  v+elvw++lgyr+++   ++++++v p+ Wre+yp++P++i  +r+           a  +L  sip ++k  +k++l   g++G+ ++ ltP +trra  +nWLl+y 
  MMETSP0890-20130614|4358_1  20 LTNENLVRIVREECTDDQVNELVWKCLGYRRRD-DGTFDNEQVFPK-WREKYPSPPDLIGiTRTyskeidepvlrANQALVNSIPMKYKGGIKHHLakvGWTGFMLQGLTPNKTRRAQCTNWLLYYR 144
                 78899*************************998.788********9.***********96334322222222233556799************97644489***********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:01.03
# Mc/sec: 442.05
//
Query:       MMETSP0890-20130614|4350_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-18   66.3   0.0    2.2e-18   65.9   0.0    1.1  1  PF00348.12 Polyprenyl synthetase
      0.008   16.0   0.2      0.017   14.9   0.0    1.5  2  PF12489.3  Nuclear coactivator
  ------ inclusion threshold ------
      0.026   14.8   0.0      0.043   14.1   0.0    1.3  1  PF11829.3  Protein of unknown function (DUF3349)


Domain annotation for each model (and alignments):
>> PF00348.12  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   4.8e-22   2.2e-18     142     257 ..       2     117 ..       1     119 [. 0.92

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 4.8e-22
                 HHHHTHHHCHHHHHHHHCC-----CCHHHHHHHHHH---HHHHHHHHHHH---TTT----.--TTTTT---HHHHHHHHH...HHHHHHHHHHHHHHH-HHHHCCCCHHHHHHCCHHHH CS
  PF00348.12 142 vksKTaaLfeasvqlaaivagadeeeekelkdfglelGlaFQivDDilDltadeeelgKpvgsDlqegkltlpvllalek...aseeqrkllkeasekklseaaakkvaetkelealae 257
                 v  KT+ Lf++++ l+a+ + ++   +++ + +  +l l+FQi DD  +l +de+  +K  ++D++egk+++p++ al++    +  +++l++ ++++ l+++a++ +++t ++e++++
  MMETSP0890-20130614|4350_1   2 VLDKTGGLFRLALGLMAAFSSES---RHKYNTLIDRLALYFQIRDDFVNLRSDEYMHSKSYCEDITEGKFSFPIIRALHArpdDTRLLAILKQRTNDNDLKRHAVQFMEKTGAFEYTRA 117
                 678**********9999999988...555889999********************************************9887888899999999999****************99875 PP

>> PF12489.3  Nuclear coactivator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   5.1e+03      33      56 ..      89     112 ..      84     120 .. 0.70
   2 !   14.9   0.0   3.7e-06     0.017      57     109 ..     144     194 ..     127     203 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.1
                 XXXXXXXXXX..XXXXXXXXXXXX CS
   PF12489.3  33 lkkqlkeeslqlqsaqlekawGqL 56 
                 lk++++ + l+  + q+ +  G +
  MMETSP0890-20130614|4350_1  89 LKQRTNDNDLKRHAVQFMEKTGAF 112
                 667777777777777776666666 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.7e-06
                 XXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF12489.3  57 kdLenwLlk.kqprkrnsnssssqfsieleklsdlelkpeeedLsdwlvtadtv 109
                 ++L  +L     p++++   +ss fs + +++++ e+  e e   d+++ + ++
  MMETSP0890-20130614|4350_1 144 DHLDRQLTStSFPSDSHVAVTSSNFSSCTIDEEEREMRNEYE---DLMISPPST 194
                 4556666664444**************************999...777777665 PP

>> PF11829.3  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.4e-06     0.043      22      93 ..      79     158 ..      77     162 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.4e-06
                 GGGHHHHHHHHC----HHHHHHHHHHHHH.-----B.......-HHHHHHHHHHHHSS---HHHHHHHHHHHHT----BS CS
   PF11829.3  22 ekdyvplLaLLrrrLtddevkevaaelle.rgesat.......daadiavlitevtdeepspedverVaarLaakgwpla 93 
                 ++d  +lLa+L++r+ d+++k+ a +++e +g ++         +adi++ i+ +  +    + ++ +  +L ++++p +
  MMETSP0890-20130614|4350_1  79 RPDDTRLLAILKQRTNDNDLKRHAVQFMEkTGAFEYtraklcaLRADIEQDIATLGGHPTLTKLIDHLDRQLTSTSFPSD 158
                 57999****************99888887356666566667766778888888887777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 630.94
//
Query:       MMETSP0890-20130614|4361_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-11   43.3   0.2    2.5e-05   24.6   0.0    2.0  2  PF08238.7 Sel1 repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.8e-09   2.5e-05      19      39 .]       3      23 ..       1      23 [. 0.94
   2 !   17.3   0.0   3.7e-07     0.005       1      30 [.      24      50 ..      24      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.8e-09
   PF08238.7 19 GvpkdpekAleWyekAAeqGh 39
                Gv++ +e A+ Wy++AA+qGh
  MMETSP0890-20130614|4361_1  3 GVEQSYEIAVMWYRRAADQGH 23
                7999****************9 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.7e-07
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleW 30
                a+A   LG   +y+nG   v++ +e A+eW
  MMETSP0890-20130614|4361_1 24 ADAHLFLG--VCYENGH-SVEQSYEVAVEW 50
                7999****..888***9.8*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 193.99
//
Query:       MMETSP0890-20130614|4363_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 224.89
//
Query:       MMETSP0890-20130614|4359_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   49.9   1.9    6.2e-06   25.3   0.0    2.0  2  PF00240.18 Ubiquitin family
    2.9e-07   29.9   0.2      0.001   18.6   0.1    2.0  2  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.1e-10   6.2e-06      49      69 .]       2      22 ..       1      22 [. 0.95
   2 !   24.7   0.2   1.4e-09   9.6e-06       1      23 [.      30      52 ..      30      53 .] 0.97

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 9.1e-10
                SBTTTTTT-TTEEEEEEESSS CS
  PF00240.18 49 rtlseyniqdgstlhlvlrlr 69
                rtls+yniq++stlhlvlrlr
  MMETSP0890-20130614|4359_1  2 RTLSDYNIQKESTLHLVLRLR 22
                8******************97 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1.4e-09
                EESSSEEEEEEECTTSBHHHHHH CS
  PF00240.18  1 ktlsgktitlevepsdtvselKe 23
                ktl+gktitl+vepsdt++++K+
  MMETSP0890-20130614|4359_1 30 KTLTGKTITLDVEPSDTIDNVKQ 52
                89********************8 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   7.3e-05       0.5      55      72 .]       2      19 ..       1      19 [. 0.92
   2 !   18.6   0.1   1.5e-07     0.001       1      28 [.      25      52 ..      25      53 .] 0.95

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.3e-05
                SBGGGSS--TTEEEEEE- CS
   PF11976.3 55 dtvedldiedgdtidvvi 72
                +t+ d++i++++t+++v+
  MMETSP0890-20130614|4359_1  2 RTLSDYNIQKESTLHLVL 19
                699************996 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.5e-07
                EEEEEEESSS--EEEEEETTSBHHHHHH CS
   PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLie 28
                ++i++k+ +gk+++++V+p++t+ ++++
  MMETSP0890-20130614|4359_1 25 MQIFVKTLTGKTITLDVEPSDTIDNVKQ 52
                89**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:01.15
# Mc/sec: 109.49
//
Query:       MMETSP0890-20130614|4367_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.5e-127  424.0   0.1     4e-127  423.8   0.0    1.0  1  PF00871.12 Acetokinase family


Domain annotation for each model (and alignments):
>> PF00871.12  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.8   0.0  2.9e-131    4e-127       2     387 ..       7     397 ..       6     398 .. 0.93

  Alignments for each domain:
  == domain 1    score: 423.8 bits;  conditional E-value: 2.9e-131
                 EEEEE-----BEEEEEETT.....TTEEEEE-EEE-----....S-EEEEEE----EEEEE---SSHHHHHHHHHHHHT-----S------BE-EEE-------SS-EE-----HHHHHHTCCCSTTTCHHHH---HHHHHH-----EEEEETTGGGCC--HHHHS-SS-HHHHHH-----------HHHHHHHHHHHH----GGG--EEEEE-----EEEEE----EEEE-----TT-------------TTHHHHHHHH----HHHHHHHHHH-----------S-HHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHT-.---EEEEE-------CCHHHHHH---------B-TTGGG-----EE..-B-TT-SSEEEE----HHHHHH CS
  PF00871.12   2 vLviNaGSsSlKfqlleak.....keevlakglverille....naeilkklenekkeeektaladheealklilnalkeekvikdlkeiaaighRvvhggekftesvlvtdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgvRrygfHgtshkyvakraakllgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpaivvylaekeglsadevenllnkksGllglsglssDlrdvedkaeegdeeaelalkvyvyriakyigeylavLegkvDaivFTgGigenaalvrelvleklevlglkidkeknkrrgedel..istedskvkvlvvptnEelaia 387
                  Lv+N+GSsS+K++++e k     + +  ++g ve+i+      + +++k++e +kk  +k++ +dh++al+ i+ +lke+      + ++ +ghRvvhgg +f+e++lv++++++ i++ ++laplhNp+ l g ++a   + + ++vavfDtafh ++p+e++ ya+p++lye++ +RrygfHgts+ yv++++ k          +i+cHlGnGaS++ +k+Gk++dt+mgltpL+Gl+mgtRsGdid ++ ++l+++ g s +e++++lnk+sGl+glsg+ssD+r+v  +ae+g+ +a la kvy++ri+ky+g+yl +L gk  aivFT+G+gen +  r++v+++le++g+ +d+++n  + ++ l  i ++ s +k+lv  tnEe+aia
  MMETSP0890-20130614|4367_1   7 ALVLNSGSSSIKYGVFELKkenevNAKSVLSGQVEKIGKSveggQLFTVKNEETGKKDIKKVEASDHAAALECIATVLKEK---GFESGMDVVGHRVVHGGADFSEPALVNEKTLACIEKNVPLAPLHNPPALLGLRSAMTKFSSCPHVAVFDTAFHASMPPESFTYAIPYQLYEKYSIRRYGFHGTSYAYVSQQVIKSYPNIR---SMIICHLGNGASMCCIKDGKCLDTTMGLTPLDGLMMGTRSGDIDAGLHIFLHRELGKSPAEIDTILNKQSGLIGLSGISSDMREVLAAAESGNARAILARKVYIERIRKYLGAYLIKLRGKCGAIVFTAGVGENDSDLRAQVCSGLETFGISLDSSRNYAKSDSILhdIGSATSVLKILVAATNEEQAIA 397
                 59***************99666555566778999999875222234667778889999**********************4...4456789********************************************************************************************************999876665...89************************************************************************************************************************************************************7666664333999******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.99
# Mc/sec: 987.59
//
Query:       MMETSP0890-20130614|4370_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-09   36.9   0.0    4.3e-09   36.5   0.0    1.1  1  PF13738.1 Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.044   13.5   0.0      0.056   13.2   0.0    1.2  1  PF07992.9 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   6.4e-13   4.3e-09       9     185 ..       2     201 ..       1     203 [. 0.71

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 6.4e-13
   PF13738.1   9 GlafadnlleegatpliivDrnak.....pGghwlkaysfvrl.hqpsffssdfgvn.dleklsldsspkwrikaelasgeeisayledvarrlglk...vrlstrvtevere...gdrfevrvtdgrevrakalvlatgavskpktlglpg.........sadkeavhleevlepe....dlkgkrvvVvGgghsAidalln 185
                 Gl  ++++le++ + + ++++++       G+ ++ ++ ++r  + +++f   + ++ dl +++l ++p  +   +l    + ++    v+rr  +     r +t+  + +r    +d+++  +++g+e+ +++++latga +   ++              + +e v +++ ++ +     + ++ +++vGg+hs++ a+ n
  MMETSP0890-20130614|4370_1   2 GLLSVAKVLESSGA-VGWIEKGDFitmgrLGERYSSVPANTRNdRLVGAFRALPLLEfDLHNCALAKEPL-MATSQLGLSVDFLRRSSSVLRRKHVDklyCRERTKLISLSRRmsqNDSWKAILENGEEIISERVILATGA-QPRGVPRACReeergadffLEHDELVVPDRCDSLDldenGIINQGIAIVGGSHSGMLAVAN 201
                 88888999999888.8999966432222288888888888777333455553333448999999999874.556888888888999999****98877668888888888877887899*********************7.3334444444566655554222355555544333222224677*************99865 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.2e-06     0.056     100     159 ..     121     201 ..      57     227 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.2e-06
                 EEETEEEEEEESEEEE----B----TGCCH........TEEEC.SSHHHHHHHHHHCST.....TTEEEEE-..........- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx..........x RF
   PF07992.9 100 dekgkgrdikydklviAtGarprtlgipgv........evailargvedsdeilellek.....pkkvvvvG..........t 159
                    ++g++i  +++++AtGa+pr  g+p +        +++  + ++   d++++l+ +     ++ +++vG          +
  MMETSP0890-20130614|4370_1 121 AILENGEEIISERVILATGAQPR--GVPRAcreeergaDFFLEHDELVVPDRCDSLDLDengiiNQGIAIVGgshsgmlavaN 201
                 34568999***************..8887655433333333333444444444444444444444477777766655555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.85
# Mc/sec: 656.88
//
Query:       MMETSP0890-20130614|4386_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-48  161.2   0.0    2.5e-17   61.9   0.0    3.1  3  PF13475.1  Domain of unknown function (DUF4116)
     0.0012   18.5   0.4        3.8    7.3   0.0    3.6  3  PF10756.4  Protein of unknown function (DUF2581)
  ------ inclusion threshold ------
      0.023   14.4   0.1        2.9    7.6   0.0    2.7  3  PF03785.9  Peptidase family C25, C terminal ig-like domain
      0.028   13.9   0.0        9.8    5.8   0.0    3.1  3  PF07892.6  Protein of unknown function (DUF1667)
      0.048   12.0   1.9          2    6.7   0.1    1.9  2  PF03599.11 CO dehydrogenase/acetyl-CoA synthase delta subunit
      0.092   12.2   0.5        6.7    6.2   0.2    2.4  2  PF06115.6  Domain of unknown function (DUF956)
        1.1    9.3   4.0         49    4.1   0.0    3.7  4  PF09575.5  Small spore protein J (Spore_SspJ)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   9.4e-19   1.8e-15       3      49 .]       1      47 [.       1      47 [. 0.99
   2 !   61.9   0.0   1.3e-20   2.5e-17       1      49 []      49      97 ..      49      97 .. 0.97
   3 !   52.0   0.0   1.6e-17   3.2e-14       1      46 [.      74     119 ..      74     122 .. 0.96

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 9.4e-19
   PF13475.1  3 EivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                Eivl+av+++g al+y+s eLknD+e+vl+Av q+g+al++as eL+
  MMETSP0890-20130614|4386_1  1 EIVLAAVTQYGRALEYASVELKNDREMVLAAVTQDGKALRFASFELK 47
                9******************************************9997 PP

  == domain 2    score: 61.9 bits;  conditional E-value: 1.3e-20
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                DrEivl av+++g+al y++e L+nD+eivl+Av qng++l+ as  L+
  MMETSP0890-20130614|4386_1 49 DREIVLSAVTQDGEALGYVNEQLRNDREIVLAAVTQNGCVLRIASQALK 97
                9*****************************************9998775 PP

  == domain 3    score: 52.0 bits;  conditional E-value: 1.6e-17
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyase 46 
                 DrEivl+av++ng++l+ +s  Lk D++ivl Av qn +al++as 
  MMETSP0890-20130614|4386_1  74 DREIVLAAVTQNGCVLRIASQALKDDRDIVLTAVTQNRHALRFASQ 119
                 9*******************************************96 PP

>> PF10756.4  Protein of unknown function (DUF2581)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019       3.8      34      63 ..      10      40 ..       1      45 [. 0.74
   2 !    6.3   0.0    0.0041         8      35      57 ..      38      60 ..      36      86 .. 0.85
   3 ?    2.3   0.0     0.072   1.4e+02      39      58 ..      92     111 ..      88     122 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
   PF10756.4 34 rgrrl..arldlrdgelvplpavqlgddpelv 63
                +gr l  a ++l+ +++++l av+ + +  l 
  MMETSP0890-20130614|4386_1 10 YGRALeyASVELKNDREMVLAAVTQDGK-ALR 40
                4444466*****************9755.555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0041
   PF10756.4 35 grrlarldlrdgelvplpavqlg 57
                ++r a  +l+ +++++l+av+ +
  MMETSP0890-20130614|4386_1 38 ALRFASFELKNDREIVLSAVTQD 60
                67889999999999999999976 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.072
   PF10756.4  39 arldlrdgelvplpavqlgd 58 
                 a   l+d++ ++l+av+ + 
  MMETSP0890-20130614|4386_1  92 ASQALKDDRDIVLTAVTQNR 111
                 5556899*********9874 PP

>> PF03785.9  Peptidase family C25, C terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.032        62      29      49 ..      18      38 ..       7      41 .. 0.81
   2 ?    7.6   0.0    0.0015       2.9      33      71 ..      47      85 ..      41      91 .. 0.87
   3 ?   -0.6   0.0      0.54   1.1e+03      30      49 ..      94     113 ..      85     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.032
   PF03785.9 29 iatiskdGklyGtavvedGva 49
                 + + +d +++ +av +dG+a
  MMETSP0890-20130614|4386_1 18 SVELKNDREMVLAAVTQDGKA 38
                566778889999999999998 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0015
   PF03785.9 33 skdGklyGtavvedGvatikltksiteesnltltvvgyn 71
                 +d +++ +av +dG a   +++++ ++ ++ l  v  n
  MMETSP0890-20130614|4386_1 47 KNDREIVLSAVTQDGEALGYVNEQLRNDREIVLAAVTQN 85
                57888999********************99999988877 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.54
   PF03785.9  30 atiskdGklyGtavvedGva 49 
                  ++ +d +++ tav ++  a
  MMETSP0890-20130614|4386_1  94 QALKDDRDIVLTAVTQNRHA 113
                 56778888888888877655 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.005       9.8       2      30 ..      12      40 ..      11      43 .. 0.86
   2 ?    3.8   0.0     0.022        42       3      29 ..      38      64 ..      36      68 .. 0.85
   3 ?    2.3   0.0     0.062   1.2e+02       6      33 ..      66      93 ..      61     123 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.005
   PF07892.6  2 rGeeYakkeltnpkriltstVkveggelp 30
                r  eYa  el+n + ++ + V  +g+ l 
  MMETSP0890-20130614|4386_1 12 RALEYASVELKNDREMVLAAVTQDGKALR 40
                789******************98887665 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.022
   PF07892.6  3 GeeYakkeltnpkriltstVkveggel 29
                   +a  el+n + i+ s V  +g+ l
  MMETSP0890-20130614|4386_1 38 ALRFASFELKNDREIVLSAVTQDGEAL 64
                5689****************9888765 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.062
   PF07892.6  6 YakkeltnpkriltstVkveggelplvp 33
                Y++++l n + i+ + V  +g+ l + +
  MMETSP0890-20130614|4386_1 66 YVNEQLRNDREIVLAAVTQNGCVLRIAS 93
                7777778888888888877777665544 PP

>> PF03599.11  CO dehydrogenase/acetyl-CoA synthase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0031       6.1     109     164 ..      12      70 ..       1      74 [. 0.62
   2 ?    6.7   0.1     0.001         2     100     155 ..      76     133 ..      69     142 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0031
  PF03599.11 109 evlkaalevvederpllyaA.tkd.dykeiaelaleykvpvvl.lsindleelkelark 164
                  +l+ a  +++++r ++ aA t+d +  ++a+  l+++ ++vl  +++d e+l  ++++
  MMETSP0890-20130614|4386_1  12 RALEYASVELKNDREMVLAAvTQDgKALRFASFELKNDREIVLsAVTQDGEALGYVNEQ 70 
                 56777766666666665555155556667788888888888873455666666666655 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.001
  PF03599.11 100 plvlggs..dpevlkaalevvederpllyaAtkddykeiaelaleykvpvvllsindl 155
                  +vl++   +  vl+ a ++++d+r ++ +A  ++ +++  ++ ++k+ +++   +  
  MMETSP0890-20130614|4386_1  76 EIVLAAVtqNGCVLRIASQALKDDRDIVLTAVTQNRHALRFASQQVKHVLAAAKEKKR 133
                 455555444999***********************99999999999998877665544 PP

>> PF06115.6  Domain of unknown function (DUF956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.024        47      55     107 ..      27      80 ..      19      91 .. 0.73
   2 ?    6.2   0.2    0.0034       6.7      73     100 ..     107     134 ..     102     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.024
   PF06115.6  55 svvadvslkgkkisr..feiktkkngkflFaskdskkvLkaireyvgadkvvksl 107
                  v a v+ +gk      fe+k ++   +l a  + ++ L  + e++ +d+ + ++
  MMETSP0890-20130614|4386_1  27 MVLAAVTQDGKALRFasFELKNDR-EIVLSAVTQDGEALGYVNEQLRNDREIVLA 80 
                 688899989996644348888888.445556667789999999999999755554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0034
   PF06115.6  73 ktkkngkflFaskdskkvLkaireyvga 100
                 +t++   ++Fas++ k+vL a++e+  +
  MMETSP0890-20130614|4386_1 107 VTQNRHALRFASQQVKHVLAAAKEKKRK 134
                 57888999*************9987555 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.025        49      21      33 ..      12      24 ..       7      27 .. 0.90
   2 ?   -1.5   0.0       1.4   2.7e+03      22      33 ..      38      49 ..      33      50 .. 0.81
   3 ?    3.0   0.0     0.053     1e+02      24      33 ..      90      99 ..      83     100 .. 0.86
   4 ?   -1.9   1.7       1.9   3.7e+03       6      15 ..     129     138 ..     127     140 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.025
   PF09575.5 21 gaLEdAgkaLkgD 33
                 aLE A+ +Lk+D
  MMETSP0890-20130614|4386_1 12 RALEYASVELKND 24
                59*********99 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.4
   PF09575.5 22 aLEdAgkaLkgD 33
                aL  A+ +Lk+D
  MMETSP0890-20130614|4386_1 38 ALRFASFELKND 49
                677799999988 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.053
   PF09575.5 24 EdAgkaLkgD 33
                  A++aLk+D
  MMETSP0890-20130614|4386_1 90 RIASQALKDD 99
                569******9 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.9
   PF09575.5   6 KdkgknseKd 15 
                 K+k++++ ++
  MMETSP0890-20130614|4386_1 129 KEKKRKKKRN 138
                 6666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       769  (0.0562463); expected 273.4 (0.02)
Passed bias filter:                      471  (0.03445); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.83
# Mc/sec: 412.87
//
Query:       MMETSP0890-20130614|4393_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-31  107.4  10.0    2.6e-12   46.8   0.3    3.0  3  PF08238.7  Sel1 repeat
    6.1e-08   32.0   8.4    5.1e-05   22.7   1.5    2.4  2  PF13414.1  TPR repeat
    4.4e-07   29.1  11.0       0.49    9.9   0.2    5.0  5  PF00515.23 Tetratricopeptide repeat
    6.1e-07   29.3   0.3      0.048   14.0   0.0    3.2  3  PF13174.1  Tetratricopeptide repeat
    7.5e-06   25.6   1.8       0.21   11.7   0.0    3.2  3  PF13431.1  Tetratricopeptide repeat
    1.9e-05   25.0   3.3     0.0076   16.7   0.1    2.9  3  PF13432.1  Tetratricopeptide repeat
    0.00013   22.1   0.2       0.32   11.6   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    0.00022   20.7  10.7        3.3    7.7   0.1    5.0  5  PF07719.12 Tetratricopeptide repeat
    0.00031   20.5   7.2      0.019   14.7   2.2    3.3  2  PF13424.1  Tetratricopeptide repeat
     0.0062   16.1   2.1       0.66    9.8   0.2    3.0  3  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.055   12.9   0.0        1.1    8.7   0.0    2.0  2  PF09127.6  Leukotriene A4 hydrolase, C-terminal
      0.064   13.0   0.5       0.32   10.7   0.1    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
        0.2   11.3   6.1         23    4.9   0.1    4.5  5  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.3   2.5e-15   2.6e-12       4      39 .]       8      40 ..       7      40 .. 0.92
   2 !   45.4   0.5   6.6e-15   6.9e-12       1      39 []      41      77 ..      41      77 .. 0.94
   3 !   20.7   0.1   3.9e-07   0.00041       1      24 [.      78      98 ..      78     100 .] 0.88

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 2.5e-15
   PF08238.7  4 qynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                q nLG   +y++G  Gv++++e+A+eWy++AA+qG+
  MMETSP0890-20130614|4393_1  8 QSNLG--DCYYHGH-GVEQNYELAVEWYRRAADQGD 40
                569**..7778**8.9*******************7 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 6.6e-15
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                a+AqynLG   +y+nG  Gv+++ ++A+eW+++AA+q++
  MMETSP0890-20130614|4393_1 41 AKAQYNLG--VCYQNGHHGVEQNGDLAVEWFRRAADQDY 77
                68******..8889***99******************85 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 3.9e-07
   PF08238.7  1 aeAqynLGlyymylnGlgGvpkdp 24
                a+Aq+nLG  ++y+nG  Gv++ +
  MMETSP0890-20130614|4393_1 78 ADAQCNLG--ECYYNGH-GVEQSY 98
                79******..9999**8.9*9965 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.5   4.8e-08   5.1e-05       2      51 ..       4      54 ..       3      58 .. 0.92
   2 !   12.7   0.3   6.1e-05     0.064      18      51 ..      61      91 ..      57      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.8e-08
   PF13414.1  2 nAealkelGnalfk....egdydeAieayekAleldpnnaelyynlAlaylklg 51
                +Ae   +lG ++++    e++y+ A+e y++A +    +a++ ynl+ +y++ g
  MMETSP0890-20130614|4393_1  4 KAEIQSNLGDCYYHghgvEQNYELAVEWYRRAADQG--DAKAQYNLGVCYQN-G 54
                799999********999999************9877..7***********98.5 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 6.1e-05
   PF13414.1 18 dydeAieayekAleldpnnaelyynlAlaylklg 51
                + d A+e +++A + d  +a++ +nl+ +y++ g
  MMETSP0890-20130614|4393_1 61 NGDLAVEWFRRAADQD--YADAQCNLGECYYN-G 91
                6678999999998877..8***********98.5 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.028        29       1      12 [.       5      16 ..       5      17 .. 0.86
   2 !    8.2   0.0    0.0017       1.8      15      27 ..      23      35 ..      19      38 .. 0.90
   3 !    9.9   0.2   0.00046      0.49       1      12 [.      41      52 ..      41      53 .. 0.92
   4 ?    1.7   0.0      0.18   1.9e+02      18      28 ..      63      73 ..      59      76 .. 0.81
   5 !    8.7   0.2    0.0011       1.2       1      13 [.      78      90 ..      78      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.028
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                a++  nlG +y+
  MMETSP0890-20130614|4393_1  5 AEIQSNLGDCYY 16
                67889******9 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0017
                T-HHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekA 27
                ++y+ A+e y++A
  MMETSP0890-20130614|4393_1 23 QNYELAVEWYRRA 35
                69**********9 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00046
                HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnayl 12
                aka ynlG++y+
  MMETSP0890-20130614|4393_1 41 AKAQYNLGVCYQ 52
                89*********8 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.18
                HHHHHHHHHHH CS
  PF00515.23 18 deAleyyekAL 28
                d A+e +++A 
  MMETSP0890-20130614|4393_1 63 DLAVEWFRRAA 73
                78999999995 PP

  == domain 5    score: 8.7 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylk 13
                a+a +nlG +y++
  MMETSP0890-20130614|4393_1 78 ADAQCNLGECYYN 90
                89*********95 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0012       1.2       5      28 ..      10      37 ..       6      38 .. 0.90
   2 !   14.0   0.0   4.5e-05     0.048       2      29 ..      43      75 ..      42      80 .. 0.90
   3 ?    2.8   0.0      0.17   1.7e+02       5      13 ..      83      91 ..      79      99 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0012
                HHHHHHHHH....HHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyykl....gdtdeAlealerlik 28
                +l+ +yy +    ++++ A+e ++r  +
  MMETSP0890-20130614|4393_1 10 NLGDCYYHGhgveQNYELAVEWYRRAAD 37
                89******99**************9876 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.5e-05
                HHHHHHHHHHHH.....HHHHHHHHHHHHHHHH CS
   PF13174.1  2 Alyklalsyykl.....gdtdeAlealerlike 29
                A+y+l+ +y+++     ++ d A+e ++r  ++
  MMETSP0890-20130614|4393_1 43 AQYNLGVCYQNGhhgveQNGDLAVEWFRRAADQ 75
                99*********99****8999********9887 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.17
                HHHHHHHHH CS
   PF13174.1  5 klalsyykl 13
                +l+++yy++
  MMETSP0890-20130614|4393_1 83 NLGECYYNG 91
                89*****85 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.31   3.2e+02      13      25 ..       5      17 ..       3      30 .. 0.63
   2 !   10.3   0.0   0.00057       0.6       9      25 ..      37      53 ..      31      65 .. 0.73
   3 !   11.7   0.0    0.0002      0.21       9      30 ..      74      95 ..      68      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.31
   PF13431.1 13 adaynnLAellln 25
                a+   nL+ +++ 
  MMETSP0890-20130614|4393_1  5 AEIQSNLGDCYYH 17
                5556689988884 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00057
   PF13431.1  9 dPnnadaynnLAellln 25
                d  +a a +nL+++++n
  MMETSP0890-20130614|4393_1 37 DQGDAKAQYNLGVCYQN 53
                7889***********94 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.0002
   PF13431.1  9 dPnnadaynnLAelllnnGdle 30
                d ++ada +nL+e+++n    e
  MMETSP0890-20130614|4393_1 74 DQDYADAQCNLGECYYNGHGVE 95
                789*************976555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   7.2e-06    0.0076      31      62 ..       5      40 ..       1      42 [. 0.90
   2 !   12.3   3.0   0.00017      0.18      11      60 ..      23      75 ..      21      80 .. 0.88
   3 ?    5.1   0.2     0.032        33      18      42 ..      67      89 ..      59      96 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7.2e-06
   PF13432.1 31 aeallllaeallrl....grldeAaallraalalaP 62
                ae++ +l++++++      +++ A++++r+a++ ++
  MMETSP0890-20130614|4393_1  5 AEIQSNLGDCYYHGhgveQNYELAVEWYRRAADQGD 40
                899***************************997665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00017
   PF13432.1 11 GdydeAlaaleaalalaPeaaeallllaeallrl.....grldeAaallraalal 60
                ++y+ A++ +++a ++   +a a+++l++++         + d A++++r+a++ 
  MMETSP0890-20130614|4393_1 23 QNYELAVEWYRRAADQG--DAKAQYNLGVCYQNGhhgveQNGDLAVEWFRRAADQ 75
                69999999999999999..************97789**99999999*****9754 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.032
   PF13432.1 18 aaleaalalaPeaaeallllaeall 42
                + +++a +++  +a+a+ +l+e+++
  MMETSP0890-20130614|4393_1 67 EWFRRAADQD--YADAQCNLGECYY 89
                4455555555..8999999999988 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0    0.0003      0.32      15      43 ..      23      49 ..       5      50 .. 0.79
   2 !    8.9   0.0    0.0023       2.4      18      43 ..      63      86 ..      55      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0003
   PF13428.1 15 GdpdeAiallrralalaPddaealllLar 43
                ++++ A++++rra  ++ +da a+++L+ 
  MMETSP0890-20130614|4393_1 23 QNYELAVEWYRRA--ADQGDAKAQYNLGV 49
                689**********..77889999999986 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0023
   PF13428.1 18 deAiallrralalaPddaealllLar 43
                d A++++rra  ++ d a+a+ +L++
  MMETSP0890-20130614|4393_1 63 DLAVEWFRRA--ADQDYADAQCNLGE 86
                789*******..88999***999987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.037        39       1      13 [.       5      17 ..       5      19 .. 0.89
   2 !    7.7   0.1    0.0032       3.3      15      28 ..      23      36 ..      20      38 .. 0.90
   3 ?    5.1   0.1     0.021        23       1      13 [.      41      53 ..      41      56 .. 0.88
   4 ?    2.6   0.0      0.14   1.5e+02      18      30 ..      63      75 ..      59      77 .. 0.81
   5 ?    4.9   0.1     0.025        26       1      13 [.      78      90 ..      78      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.037
                HHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyk 13
                ae+  nlG++yy+
  MMETSP0890-20130614|4393_1  5 AEIQSNLGDCYYH 17
                68899******96 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0032
                T-HHHHHHHHHHHH CS
  PF07719.12 15 gdyeeAleafekAl 28
                ++ye A+e++++A 
  MMETSP0890-20130614|4393_1 23 QNYELAVEWYRRAA 36
                79**********96 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.021
                HHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyk 13
                a+a ynlG +y +
  MMETSP0890-20130614|4393_1 41 AKAQYNLGVCYQN 53
                789********75 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHH CS
  PF07719.12 18 eeAleafekAlel 30
                + A+e+f++A   
  MMETSP0890-20130614|4393_1 63 DLAVEWFRRAADQ 75
                56999****9875 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.025
                HHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyk 13
                a+a +nlG++yy+
  MMETSP0890-20130614|4393_1 78 ADAQCNLGECYYN 90
                7899*******96 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.2   1.8e-05     0.019       5      74 ..       5      74 ..       2      76 .. 0.75
   2 !    7.6   1.1    0.0031       3.2      29      57 ..      63      89 ..      38      97 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.8e-05
   PF13424.1  5 atilnnlalvlrr....lgdydeAlelyekalellrelgddhpdtaralnnlanlylalg.....dydeAleylekAle 74
                a i +nl++++++    +++y+ A e+y++a         d +d a+a +nl+ +y+        + d A+e++++A +
  MMETSP0890-20130614|4393_1  5 AEIQSNLGDCYYHghgvEQNYELAVEWYRRAA--------DQGD-AKAQYNLGVCYQNGHhgveqNGDLAVEWFRRAAD 74
                66778888888864444568888888888887........5578.9**********99774465445889999999977 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0031
   PF13424.1 29 ekalellrelgddhpdtaralnnlanlyl 57
                  a+e +r++   + d+a+a  nl+++y+
  MMETSP0890-20130614|4393_1 63 DLAVEWFRRAA--DQDYADAQCNLGECYY 89
                22444433332..3456777777777776 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2   0.00062      0.66       3      31 ..       9      39 ..       7      44 .. 0.81
   2 ?    5.0   0.0      0.02        21       3      31 ..      45      76 ..      43      83 .. 0.85
   3 ?   -1.4   0.0       2.4   2.5e+03       3       9 ..      82      88 ..      80      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00062
   PF13176.1  3 lnLarlysr....lgdyekAielyeraLaltkd 31
                +nL+++y       ++ye A+e y+r  a ++ 
  MMETSP0890-20130614|4393_1  9 SNLGDCYYHghgvEQNYELAVEWYRR--AADQG 39
                58899977779999************..76654 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.02
   PF13176.1  3 lnLarlysr.....lgdyekAielyeraLaltkd 31
                +nL+++y++      ++ + A+e ++r  a ++d
  MMETSP0890-20130614|4393_1 45 YNLGVCYQNghhgvEQNGDLAVEWFRR--AADQD 76
                69999999999999999999***9999..77765 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2.4
   PF13176.1  3 lnLarly 9 
                +nL+++y
  MMETSP0890-20130614|4393_1 82 CNLGECY 88
                7999987 PP

>> PF09127.6  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0     0.001       1.1      52      84 ..       6      40 ..       1      53 [. 0.80
   2 ?    3.2   0.0      0.05        53      57      88 ..      47      81 ..      36      90 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.001
                HH.HHHHHHT..IIIT---HHHHHHHHHHHHHTT- CS
   PF09127.6 52 eqvkaLdeiY..klskskNaEikfrwlrlairaky 84
                e  ++L+++Y       +N+E++++w+r a   + 
  MMETSP0890-20130614|4393_1  6 EIQSNLGDCYyhGHGVEQNYELAVEWYRRAADQGD 40
                55679999998777889***********9877655 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.05
                HHHHT...IIIT---HHHHHHHHHHHHHTT-GGGH CS
   PF09127.6 57 LdeiY...klskskNaEikfrwlrlairakyeevl 88
                L+ +Y   +    +N  ++++w+r a   +y ++ 
  MMETSP0890-20130614|4393_1 47 LGVCYqngHHGVEQNGDLAVEWFRRAADQDYADAQ 81
                55566544444569999999999999998887765 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00031      0.32      18      33 ..      22      37 ..      18      38 .. 0.88
   2 ?   -0.5   0.0         1     1e+03      23      33 ..      64      74 ..      56      82 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00031
                TT-HHHHHHHHHHHHH CS
  PF04212.13 18 agkyeeAlelYkeAle 33
                +++ye A+e+Y+ A++
  MMETSP0890-20130614|4393_1 22 EQNYELAVEWYRRAAD 37
                79***********987 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1
                HHHHHHHHHHH CS
  PF04212.13 23 eAlelYkeAle 33
                 A+e+ + A++
  MMETSP0890-20130614|4393_1 64 LAVEWFRRAAD 74
                45555555544 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.47   4.9e+02       6      12 ..      10      16 ..       5      17 .. 0.79
   2 ?    4.9   0.1     0.022        23      15      28 ..      23      36 ..      22      37 .. 0.87
   3 ?    2.3   0.0      0.14   1.5e+02       2      12 ..      42      52 ..      41      53 .. 0.84
   4 ?    0.2   0.0      0.67   7.1e+02      18      30 ..      63      75 ..      60      79 .. 0.80
   5 ?    1.5   0.0      0.28   2.9e+02       3      12 ..      80      89 ..      78      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.47
                T---HHH CS
   PF13181.1  6 nlGdiYr 12
                nlGd+Y 
  MMETSP0890-20130614|4393_1 10 NLGDCYY 16
                89***95 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.022
                T-HHHHHHHHH--- CS
   PF13181.1 15 GdydkAkeylekal 28
                 +y++A e +++a 
  MMETSP0890-20130614|4393_1 23 QNYELAVEWYRRAA 36
                59*********995 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.14
                --TTT---HHH CS
   PF13181.1  2 kayynlGdiYr 12
                ka ynlG +Y 
  MMETSP0890-20130614|4393_1 42 KAQYNLGVCYQ 52
                789*******7 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.67
                HHHHHHHH---HH CS
   PF13181.1 18 dkAkeylekalel 30
                d+A e +++a + 
  MMETSP0890-20130614|4393_1 63 DLAVEWFRRAADQ 75
                7899999999775 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.28
                -TTT---HHH CS
   PF13181.1  3 ayynlGdiYr 12
                a +nlG++Y 
  MMETSP0890-20130614|4393_1 80 AQCNLGECYY 89
                6789****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.91
# Mc/sec: 263.34
//
Query:       MMETSP0890-20130614|4397_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-06   25.4  65.2      0.062   12.7   8.4    5.0  5  PF13441.1 YMGG-like Gly-zipper
     0.0032   16.9  69.3       0.19   11.2   8.5    4.5  4  PF13488.1 Glycine zipper
  ------ inclusion threshold ------
      0.027   14.0   8.8      0.027   14.0   6.1    4.1  3  PF13436.1 Glycine-zipper containing OmpA-like membrane domain
        2.3    7.7   8.2        8.5    5.8   0.0    4.1  6  PF09811.4 Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   7.4   8.6e-05      0.29       5      43 ..       3      40 ..       1      42 [. 0.81
   2 !    8.7  11.7   0.00032       1.1       6      43 ..      24      60 ..      23      62 .. 0.91
   3 ?    3.8   6.4      0.01        36       8      43 ..      62      96 ..      58      98 .. 0.86
   4 !    9.3   8.4   0.00021      0.71       2      40 ..      80     117 ..      79     121 .. 0.86
   5 !   12.7   8.4   1.8e-05     0.062       9      42 ..     123     155 ..     119     156 .] 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.6e-05
                XXXXXXXXXXXXXXXXXXXXX---------------TTH CS
   PF13441.1  5 aGAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                 G a+G+ +G  +G  +G    GA  G ++G+ +G a+g
  MMETSP0890-20130614|4397_1  3 VGSAVGTLVGTPLGSPVG-IDVGAGEGSGVGTPVGNAVG 40
                689999999999999999.77788888888888888877 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00032
                XXXXXXXXXXXXXXXXXXXX---------------TTH CS
   PF13441.1  6 GAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                GA+ G ++G  +G+a+G  g G a+G+a Ga  G a+g
  MMETSP0890-20130614|4397_1 24 GAGEGSGVGTPVGNAVG-TGDGRAVGTALGASDGLAVG 60
                8999*************.99999999999999888877 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.01
                XXXXXXXXXXXXXXXXXX---------------TTH CS
   PF13441.1  8 aiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                a G+ +G + G ++G +gkG+  G a+G + G  +g
  MMETSP0890-20130614|4397_1 62 AEGTCVGILDGELVG-AGKGTFDGCAVGIADGIGVG 96
                558999*********.************98887666 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXX--------------- CS
   PF13441.1   2 gavaGAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGg 40 
                 g+  G a+G a G  +G   G  g G a+G+ +G+l+G+
  MMETSP0890-20130614|4397_1  80 GTFDGCAVGIADGIGVGSGDG-TGVGRAVGTFVGTLVGA 117
                 666788999999999999999.99**************9 PP

  == domain 5    score: 12.7 bits;  conditional E-value: 1.8e-05
                 XXXXXXXXXXXXXXXXX---------------TT CS
   PF13441.1   9 iGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaa 42 
                 +GA++G a+Ga  G +g G+  G a G+ +G a+
  MMETSP0890-20130614|4397_1 123 VGAILGIAVGAGDG-NGVGTPEGSALGTTVGSAV 155
                 8*************.9999999999999999986 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4  15.6     0.066   2.3e+02       1      29 [.      23      50 ..       1      65 [. 0.48
   2 ?   -1.4  11.7      0.51   1.7e+03       2      41 ..      40      78 ..      39      92 .. 0.49
   3 !    4.8  13.9    0.0058        20       2      40 ..      76     117 ..      75     121 .. 0.72
   4 !   11.2   8.5   5.5e-05      0.19       2      38 ..     120     155 ..     119     156 .] 0.85

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.066
   PF13488.1  1 iGaaiGAaaGAaiGaaaggagkGAliGAa 29
                +Ga+ G ++G  +G a+g +g G ++G+a
  MMETSP0890-20130614|4397_1 23 VGAGEGSGVGTPVGNAVG-TGDGRAVGTA 50
                233333444444444433.2444444444 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.51
   PF13488.1  2 GaaiGAaaGAaiGaaag...gagkGAliGAavGaaaGaliGay 41
                G++ G a+G a+Ga  g   g+++G+ +G       G l+Ga 
  MMETSP0890-20130614|4397_1 40 GTGDGRAVGTALGASDGlavGPAEGTCVGIL----DGELVGAG 78
                5555666666666666533333333333333....33333332 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0058
   PF13488.1   2 GaaiGAaaGAaiGaaag...gagkGAliGAavGaaaGaliGa 40 
                 Ga+ G   G a+G a g   g+g G+ +G avG+ +G l+Ga
  MMETSP0890-20130614|4397_1  76 GAGKGTFDGCAVGIADGigvGSGDGTGVGRAVGTFVGTLVGA 117
                 777777777777776666666688888888888888888886 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 5.5e-05
   PF13488.1   2 GaaiGAaaGAaiGaaaggagkGAliGAavGaaaGali 38 
                 G  +GA++G a+Ga+ g+ g+G+  G a+G+ +G+++
  MMETSP0890-20130614|4397_1 120 GLPVGAILGIAVGAGDGN-GVGTPEGSALGTTVGSAV 155
                 666899999999999998.899999999999999986 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.1   7.9e-06     0.027      52      97 ..       1      45 [.       1      46 [. 0.94
   2 ?   -6.5  17.4         4   1.4e+04      52      75 ..      77      99 ..      41     121 .. 0.47
   3 ?    6.7   8.7    0.0014       4.9      52      93 ..     113     153 ..     112     156 .] 0.71

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.9e-06
   PF13436.1 52 aaegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagagq 97
                +++g avG++vG  +g+ +g  + ga++G ++G+ vG a+G+g g+
  MMETSP0890-20130614|4397_1  1 TTVGSAVGTLVGTPLGSPVGI-DVGAGEGSGVGTPVGNAVGTGDGR 45
                56899****************.********************9986 PP

  == domain 2    score: -6.5 bits;  conditional E-value: 4
   PF13436.1 52 aaegaavGaavGAaagaaaggaga 75
                a +g+  G avG a g  +g+ g+
  MMETSP0890-20130614|4397_1 77 AGKGTFDGCAVGIADGIGVGS-GD 99
                333333333333333333333.44 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0014
   PF13436.1  52 aaegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGa 93 
                 +++ga vG  vGA++g a+g  g+g ++G   G ++G+ +G+
  MMETSP0890-20130614|4397_1 113 TLVGAPVGLPVGAILGIAVGA-GDGNGVGTPEGSALGTTVGS 153
                 677888999999999999998.66666666666666665554 PP

>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.2   6.7e+02      21      33 ..      12      24 ..       8      29 .. 0.80
   2 ?   -2.0   0.1       0.7   2.4e+03      20      33 ..      23      36 ..      20      41 .. 0.61
   3 ?    3.8   0.1     0.011        36       4      37 ..      43      76 ..      42      77 .. 0.72
   4 ?   -2.9   0.1       1.3   4.5e+03       5      10 ..      88      93 ..      86      94 .. 0.78
   5 ?    5.8   0.0    0.0025       8.5      23      39 .]     114     130 ..     111     130 .. 0.88
   6 ?   -2.2   0.0      0.82   2.8e+03      21      33 ..     140     152 ..     139     153 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.2
   PF09811.4 21 GfqeGaqlGlelG 33
                G + G+ +G+++G
  MMETSP0890-20130614|4397_1 12 GTPLGSPVGIDVG 24
                6678999999998 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.7
   PF09811.4 20 eGfqeGaqlGlelG 33
                 G  eG+ +G  +G
  MMETSP0890-20130614|4397_1 23 VGAGEGSGVGTPVG 36
                46666776666666 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
   PF09811.4  4 eGieeGkeeglqeGfdeGfqeGaqlGlelGeleG 37
                +G + G + g  +G   G +eG  +G++ Gel G
  MMETSP0890-20130614|4397_1 43 DGRAVGTALGASDGLAVGPAEGTCVGILDGELVG 76
                6777777777777777777777777777777766 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 1.3
   PF09811.4  5 GieeGk 10
                Gi++G+
  MMETSP0890-20130614|4397_1 88 GIADGI 93
                888886 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.0025
   PF09811.4  23 qeGaqlGlelGeleGia 39 
                   Ga +Gl +G ++Gia
  MMETSP0890-20130614|4397_1 114 LVGAPVGLPVGAILGIA 130
                 57*************97 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 0.82
   PF09811.4  21 GfqeGaqlGlelG 33 
                 G +eG+ lG  +G
  MMETSP0890-20130614|4397_1 140 GTPEGSALGTTVG 152
                 6678888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 612.84
//
Query:       MMETSP0890-20130614|4400_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-23   81.0   2.2    2.1e-11   43.1   0.0    2.4  3  PF00400.27 WD domain, G-beta repeat
    0.00058   18.0   7.2      0.098   10.7   0.3    3.0  3  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.64   4.4e+03      35      39 .]       3       7 ..       2       7 .. 0.82
   2 !   37.7   0.0   1.6e-13   1.1e-09       1      39 []      11      50 ..      11      50 .. 0.98
   3 !   43.1   0.0     3e-15   2.1e-11       5      39 .]      57      91 ..      54      91 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.64
                EEEEE CS
  PF00400.27 35 irlWd 39
                +++W+
  MMETSP0890-20130614|4400_1  3 CKIWN 7 
                79**7 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 1.6e-13
                TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                gec++tl+   ++V+ +a+sp+  + lasg +D+++r+W+
  MMETSP0890-20130614|4400_1 11 GECLKTLEDSGATVYTIAWSPSnNTQLASGTDDNKVRIWN 50
                79*************************************7 PP

  == domain 3    score: 43.1 bits;  conditional E-value: 3e-15
                EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++l+gH++ V++va++ dg  l+s+S+D+t+rlWd
  MMETSP0890-20130614|4400_1 57 RELEGHEDQVNSVAYARDGMTLVSASDDHTCRLWD 91
                689*******************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1   0.00036       2.4     244     278 ..       4      32 ..       3      42 .. 0.67
   2 !   10.7   0.3   1.4e-05     0.098     230     255 ..      33      57 ..      24      76 .. 0.72
   3 !    6.3   0.3   0.00031       2.1     234     252 ..      78      96 ..      61      97 .] 0.82

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00036
   PF11715.3 244 RvWnletgqclrttdileaaellpadslsyipeps 278
                 ++Wn+++g cl+t +++       a+    +++ps
  MMETSP0890-20130614|4400_1   4 KIWNISNGECLKTLEDS------GATVYTIAWSPS 32 
                 8*********9999988......333333333333 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.4e-05
   PF11715.3 230 gqtfvftlsrDgkLRvWnletgqclr 255
                 ++t +++ + D+k+R+Wn++t  c r
  MMETSP0890-20130614|4400_1  33 NNTQLASGTDDNKVRIWNTDTSEC-R 57 
                 5666677788**************.3 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00031
   PF11715.3 234 vftlsrDgkLRvWnletgq 252
                 +++ s D++ R+W++++++
  MMETSP0890-20130614|4400_1  78 LVSASDDHTCRLWDVTNRA 96 
                 4599************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 352.19
//
Query:       MMETSP0890-20130614|4406_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.33s 00:00:00.61 Elapsed: 00:00:00.88
# Mc/sec: 138.88
//
Query:       MMETSP0890-20130614|4402_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-29  103.5   0.0    1.1e-29  103.4   0.0    1.0  1  PF10229.4 Uncharacterized conserved protein (DUF2246)
     0.0067   16.4   0.0       0.41   10.6   0.0    2.1  2  PF07157.7 DNA circulation protein N-terminus


Domain annotation for each model (and alignments):
>> PF10229.4  Uncharacterized conserved protein (DUF2246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.6e-33   1.1e-29     139     270 ..      14     144 ..       1     151 [. 0.88

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 1.6e-33
   PF10229.4 139 lrkdleelFPvveaktnnitvltltqksendmtswseeveeerekllekFvegAkeicsrLrseGyWaDFidPssGraffgpytnatlfetderyrh.lgfkiedlgcCkVirhelwgttvfvgtiftnApsd 270
                 + +++ ++FP   + + +i v+   qks  ++ +w+++v +e+++lle Fv  A+e+c+ L s+GyWaD+idP sG++ + +++ + ++      +  l +++++ g CkV+ h  wg+ v+  t ft+Ap+d
  MMETSP0890-20130614|4402_1  14 VLREVISVFP-KRSLNDQIQVIATCQKSAMELVIWGDDVAKEKDRLLEIFVAFANELCQELISMGYWADYIDPCSGLPSL-NKEGNCVYDEVAGMQAlLKYNVSQAGPCKVLLHPRWGSSVYPATCFTTAPPD 144
                 4568899***.8888899************************************************************97.5778889988888876369*******************************98 PP

>> PF07157.7  DNA circulation protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   6.1e-05      0.41      30      71 ..      19      60 ..       2      67 .. 0.78
   2 !    3.8   0.0    0.0083        56      69      88 ..     110     130 ..      93     133 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.1e-05
   PF07157.7 30 kheyPlrdeglvedlGkklrevtisalvvgddvaeqrdkLld 71
                   +P+r   +  ++  + ++  ++ +++gddva+++d+Ll+
  MMETSP0890-20130614|4402_1 19 ISVFPKRSLNDQIQVIATCQKSAMELVIWGDDVAKEKDRLLE 60
                44578888887778888899999*****************97 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0083
   PF07157.7  69 LldAlekpGaG.eLvHPdfGr 88 
                 L   + ++G+  +L+HP +G 
  MMETSP0890-20130614|4402_1 110 LKYNVSQAGPCkVLLHPRWGS 130
                 445677888863699*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 492.05
//
Query:       MMETSP0890-20130614|4396_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-21   76.2  11.6    2.1e-09   37.5   2.0    3.3  3  PF08238.7 Sel1 repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     4e-08   0.00054       3      38 ..      42      74 ..      40      75 .. 0.90
   2 !   37.5   2.0   1.6e-13   2.1e-09       1      39 []      76     112 ..      76     112 .. 0.96
   3 !   23.1   0.3   5.3e-09   7.3e-05       1      39 []     113     146 ..     113     146 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4e-08
   PF08238.7  3 AqynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38
                A++n  +++   +G  G++++ e+Al+W++k+A++G
  MMETSP0890-20130614|4396_1 42 AAFNASVMR--ARGV-GCEPNRELALKWLKKSADAG 74
                889999666..9**9.8*****************98 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 1.6e-13
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 ++Aq +L+  ymy  G+gGvpkd++ A +Wy +AA+ G+
  MMETSP0890-20130614|4396_1  76 PRAQGQLA--YMYASGRGGVPKDKAMAKHWYSLAAQGGD 112
                 68999***..**************************996 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 5.3e-09
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 ae+ y+LG   +y+nG    ++dp  A +++ +AA++Gh
  MMETSP0890-20130614|4396_1 113 AESLYRLG--NIYHNGS---EADPIMAGHYWSRAAQLGH 146
                 6899****..888***7...55999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 798.79
//
Query:       MMETSP0890-20130614|4403_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-74  248.4   0.0    9.1e-74  248.0   0.0    1.2  1  PF00579.20 tRNA synthetases class I (W and Y)
    0.00065   18.9   0.0     0.0015   17.8   0.0    1.6  1  PF01479.20 S4 domain


Domain annotation for each model (and alignments):
>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0   0.0   1.3e-77   9.1e-74       3     291 ..      62     352 ..      60     353 .. 0.98

  Alignments for each domain:
  == domain 1    score: 248.0 bits;  conditional E-value: 1.3e-77
                 CS..EEEE-EETTSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHCCTTTT..SSHHHHHHHHHHHHHH..HHHHHHHHCHCTTCEEEEGGGSTTCHCHHHHHHHCCC--BHCTSTTSHHHHHTCCST-SSBHHHHCHHHHHHHHHHHCCHC....EEE---TTHHHHHHHHHHHHHHHHHTTSS-EEEB---BBSSETTSB--TT-SSGS-BTTCCHCHHHHHHHHSCTS-CCCHHHHHHHHHTCCHHHHHHHHHHHHTECCTSHHHHHHHHHHHHH---HHHHHHHHHHHHHH CS
  PF00579.20   3 erplrvysGidPTgk.lHlGylvplkklvqlqkagyevffliaDltAligdps.kaeerklrkreeelena..ikaqlakgldpekaeivlnsdwleklelaellrdlgklgelnrmlqfksvkkrlkqnegislgeftYplLqaaDilllkad....lvpgGsDQkqhielgrelarrfnkkvfkkpvgltvplltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleaelgkkpkkeaeellaeevtklvhggdlkkalaealnell 291
                 ++p++ y+G+d+T++ lH+G l+ ++ l+ lqk+g+++++l+++ t+++gdps k e rkl+++e  + n+  i+ + +++ld +ka++v+n dwl+ l+++++lr++g+++++nrml+ +svk+rl++++ +s+ ef+Y++Lqa+D+  l  +    l++gGsDQ+++i  g el rr+ ++   k +glt+pl+t +dG  Km+K+a++ aI+L+ ek  +++  q++ +  d++v+++lk++t l++++ie+l+ ++     ++a++ la+ +t l hg ++  + + ++ +l+
  MMETSP0890-20130614|4403_1  62 KGPVSTYLGFDATADsLHVGSLLQIMILRLLQKHGHNCIVLVGGGTTKVGDPSgKDEARKLLNEEAIQSNIagISRIFSQFLDMDKAKLVNNADWLDDLKYIQFLREFGPFFSVNRMLTLDSVKNRLEREQALSFLEFNYMILQAYDFIELARRenvrLQLGGSDQWGNIINGVELGRRIDNM---KLFGLTAPLVTTADGR-KMGKTADG-AIWLTAEKLPPYDYWQFWRNVVDADVQRFLKMFTDLEIDEIEALDLTQAPAI-NAAKRKLADHATTLAHGAHVLPEIHATVDTLF 352
                 68999****************************************************************************************************************************99********************99999**************************9...****************.********.**********************************************888887.9********************99999998887 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.1e-07    0.0015       5      38 ..     386     419 ..     384     428 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.1e-07
                 HHHHHHH--SSHHHHHHHHHTT-EEE---B---T CS
  PF01479.20   5 kvLarlglassrseArqlIehGhVrVNGkvvkdp 38 
                 ++L rl +a s+s+A++lI++G+ r+  k+v d+
  MMETSP0890-20130614|4403_1 386 DLLTRLDFAQSKSQAKRLIQGGGARIQDKKVSDV 419
                 6899**********************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.94
# Mc/sec: 1152.29
//
Query:       MMETSP0890-20130614|4412_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-25   87.9   0.0    7.4e-25   87.6   0.0    1.1  1  PF01063.14 Aminotransferase class IV


Domain annotation for each model (and alignments):
>> PF01063.14  Aminotransferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   5.4e-29   7.4e-25       4     228 ..     127     371 ..     124     374 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 5.4e-29
  PF01063.14   4 deHleRLrksakal....igldldieelkkilqellkkng..rlqqg.rlrlvvsrgggdlggsgytksecg......vkslalkqsapeslllakklrvssqpvsravplaglKtlnrldnvlaalraarragaddvllvdedgn..vtEgstsNvfilkggelytPslesgiLpGitrqvllelake.lgieveersltlkdlqqadeafltnslrgilpvtsidgeivs..........sgpltkklq 228
                  ++ +R+r+ a+++     +  l +e++k+ +   l+ ++  + +++ ++r+++++ g  +g+++++++ +        +++  ++ ++++ l ++++ ++++       ++ +K   +++  l ++ +a+++g++  l++d   +  v E stsN+f +kg++++tP  +  iLp+it ++l+ la++ l+++ve r +  ++l  ++e+  ++++  ++pv ++ ++++            +p++++l+
  MMETSP0890-20130614|4412_1 127 YDNAKRMRRGAERTlmiaPDEVLFVEACKRAVMNNLDFVPpyGSKGAlYIRPLLFGSGPRIGLQPADAYDFLvivtpvAEYYRSAGLKAVDALVIDDFDRAAPRG-----VGSVKLAGNYAPDLQPNFKAKEDGFQVGLYLDAVTHtyVEEFSTSNLFGIKGNTYLTPESSA-ILPSITNDSLMRLAESvLNLKVERRQIPFEELASFSEVAACGTAVVVTPVGTLTRRSTLgsgdsvfsypKHPISTQLY 371
                 67889*********9976677899999************9**666666*********************999***999999999999*****************9.....**************999999999****9***9876666**********************99.****************************************************99998877777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.65
# Mc/sec: 1452.56
//
Query:       MMETSP0890-20130614|4413_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-38  130.0   0.0    6.2e-38  129.8   0.0    1.0  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.0   4.6e-42   6.2e-38       3     189 ..      12     200 ..      10     201 .. 0.97

  Alignments for each domain:
  == domain 1    score: 129.8 bits;  conditional E-value: 4.6e-42
                 C--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHH........STTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
  PF00227.21   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktllekly........kedltleeavelavkalkealerdklsgknvevav 189
                 +G+tv++i+g d++v+aad+r ++g ++ls++ ++K++ + ++i+ma aG ++D+ tl++ ++ + ++y++++g+ +sv     ++a+ll ++++++++ p+++  ++ag+d +g++ +y+ d +Gs+ ++ ++ ++Gsg+ ++ +ll++ +         +d+tle  v l+++a  +a +rd ++g+ +e++ 
  MMETSP0890-20130614|4413_1  12 NGGTVLAIAGPDFAVVAADTRMSTGYSILSRN-MSKMHTLGEKIVMASAGCQTDVVTLANELETRHRMYQHKTGDSMSVT----AMAQLLGNTLYYKRFFPYYAFNVLAGIDAQGKGAVYSYDAIGSFERV-PFSSTGSGQSYCVPLLDNVLchknrndpPPDMTLEHVVSLVKEAFVSAGDRDIYTGDSLEIVA 200
                 8***************************9999.7**********************************************....9**********************************************.7*****************9999999999999****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 808.77
//
Query:       MMETSP0890-20130614|4416_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 132.34
//
Query:       MMETSP0890-20130614|4422_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-46  155.8  18.2    7.8e-14   51.6   0.1    5.9  7  PF12796.2  Ankyrin repeats (3 copies)
    2.4e-34  115.2  30.4    3.9e-07   29.4   0.1    9.0  9  PF00023.25 Ankyrin repeat
    2.8e-30  101.2  14.3    6.2e-05   22.7   0.0    9.7  9  PF13606.1  Ankyrin repeat
    4.6e-25   86.9  19.6    8.8e-06   25.6   0.1    8.5  9  PF13857.1  Ankyrin repeats (many copies)
    2.7e-22   78.6  15.7    1.2e-06   28.7   0.1    6.7  7  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.44   11.1   2.2        6.2    7.4   0.2    2.7  2  PF00114.14 Pilin (bacterial filament)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.6e-06     0.017      19      55 ..       3      44 ..       1      59 [. 0.82
   2 !   50.7   0.1   6.8e-17   1.5e-13      18      87 ..      73     142 ..      60     144 .. 0.88
   3 !   51.6   0.1   3.4e-17   7.8e-14      14      86 ..     131     210 ..     131     213 .. 0.90
   4 !   44.9   0.7   4.4e-15   9.9e-12       1      68 [.     153     225 ..     153     304 .. 0.81
   5 !    9.3   0.1   0.00055       1.3      30      81 ..     309     371 ..     249     375 .. 0.59
   6 !   25.9   0.0   3.5e-09     8e-06       3      86 ..     311     420 ..     309     423 .. 0.78
   7 !   14.2   0.0   1.6e-05     0.036       1      52 [.     397     458 ..     397     464 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.6e-06
   PF12796.2 19 kgadvdl....get.pLhlAaeagnleivklLleagadvnak 55
                + ad+++    g+t pL +Aa  g +  v++Ll+ ga+++  
  MMETSP0890-20130614|4422_1  3 CHADINTatlnGDTsPLYIAANEGFIHSVNALLQLGANPDIS 44
                667788777777778*******************99999754 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 6.8e-17
   PF12796.2  18 ekgadvdlgetpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnl 87 
                  ++ + + g +pLh+Aae+g+++++++L++agad++    + g tpL+lA++++++  ++ L+++ga +++
  MMETSP0890-20130614|4422_1  73 PNQEEAN-GARPLHAAAERGHTAVAQALINAGADLDGGFsMAGLTPLMLAAQHNQANSIRTLISHGAQIER 142
                 4555555.788************************99889***************************9986 PP

  == domain 3    score: 51.6 bits;  conditional E-value: 3.4e-17
   PF12796.2  14 klLlekgadvdl......getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvn 86 
                 ++L+++ga +++      + t+L++Aa  g+l++++ Ll+aga++++ +   g +pL lA+ ng++ +v++Ll++gad +
  MMETSP0890-20130614|4422_1 131 RTLISHGAQIERqahnafSGTALSYAAVGGHLDALQTLLDAGANPQTPTrSAGVSPLALAAANGQQNAVEILLSHGADAQ 210
                 589********7665555555************************99999***************************976 PP

  == domain 4    score: 44.9 bits;  conditional E-value: 4.4e-15
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvr 68 
                 L +Aa  g+l+++++Ll++ga++ +     g +pL lAa++g+ ++v++Ll++gad ++ d++g +pL +A  
  MMETSP0890-20130614|4422_1 153 LSYAAVGGHLDALQTLLDAGANPQTptrsaGVSPLALAAANGQQNAVEILLSHGADAQQIDNSGLSPLAVAST 225
                 6799********************876555555**********************************999965 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.00055
   PF12796.2  30 LhlAa....eagnleivklLleaga.dvnakd......kegntpLhlAvrnghlelvklLlek 81 
                 L lA+     + +++ + +Ll+ag  d+na            tpL lA+++ ++ l++ Ll+ 
  MMETSP0890-20130614|4422_1 309 LCLAVrynkNSSHYDLLVVLLDAGIdDPNAICeftdrsGPRVTPLLLAIEKDDILLARALLST 371
                 334442222334456666666666423444444444445555666666666666666666654 PP

  == domain 6    score: 25.9 bits;  conditional E-value: 3.5e-09
   PF12796.2   3 lAaengn....lelvklLlekg.advdl..........getpLhlAaeagnleivklLle.......agadvnakd....kegntpLhlAvrnghlelvklLlekgadvn 86 
                 lA+++++    ++l+  Ll++g +d++           + tpL lA+e++++  +++Ll+       + ad++  +       ++pL  Av +g++ ++  Ll++ga++ 
  MMETSP0890-20130614|4422_1 311 LAVRYNKnsshYDLLVVLLDAGiDDPNAiceftdrsgpRVTPLLLAIEKDDILLARALLSteteapgKSADPDLGSpdtnTIYKSPLLTAVVKGRVHIAAALLDAGANCA 420
                 566655444449**********7666668777655555555*******************99999885555544444455678999*********************975 PP

  == domain 7    score: 14.2 bits;  conditional E-value: 1.6e-05
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl..........getpLhlAaeagnleivklLleagadv 52 
                 L  A+ +g+++++  Ll++ga++ +          +++ L +A ++ ++++++lL  +g  +
  MMETSP0890-20130614|4422_1 397 LLTAVVKGRVHIAAALLDAGANCAIlvasskdpsrHDNLLDIARSRRDFDMLQLLSRNGDRC 458
                 56799999999999999999999999999888888888999999999999999999888554 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.4e-05     0.031       4      30 ..      17      43 ..      15      44 .. 0.95
   2 !   26.1   0.2   1.9e-09   4.4e-06       2      29 ..      80     107 ..      79     107 .. 0.92
   3 !   29.4   0.1   1.7e-10   3.9e-07       2      28 ..     114     140 ..     113     144 .. 0.93
   4 !   18.0   0.1   6.8e-07    0.0015       4      30 ..     151     177 ..     151     180 .. 0.93
   5 !   23.1   0.2   1.6e-08   3.7e-05       2      32 ..     183     213 ..     182     214 .. 0.91
   6 ?   -3.9   0.0         6   1.4e+04       2      10 ..     216     224 ..     216     225 .. 0.83
   7 ?    4.5   0.1     0.013        30       6      27 ..     309     334 ..     306     335 .. 0.92
   8 ?    4.6   0.0     0.012        27       4      23 ..     351     370 ..     350     384 .. 0.85
   9 !   11.7   0.2   6.9e-05      0.16       4      28 ..     395     419 ..     394     422 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
                BHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25  4 TPLHlAalrgnlevvklLlsqGAdlna 30
                +PL +Aa  g +  v  Ll+ GA++++
  MMETSP0890-20130614|4422_1 17 SPLYIAANEGFIHSVNALLQLGANPDI 43
                7************************96 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.9e-09
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdln 29 
                 G  PLH Aa+rg++ v++ L+++GAdl+
  MMETSP0890-20130614|4422_1  80 GARPLHAAAERGHTAVAQALINAGADLD 107
                 666***********************97 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 1.7e-10
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdl 28 
                 G TPL+lAa++++++ ++ L+s+GA +
  MMETSP0890-20130614|4422_1 114 GLTPLMLAAQHNQANSIRTLISHGAQI 140
                 99***********************87 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 6.8e-07
                 BHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlna 30 
                 T+L +Aa  g+l+ ++ Ll++GA++  
  MMETSP0890-20130614|4422_1 151 TALSYAAVGGHLDALQTLLDAGANPQT 177
                 9***********************975 PP

  == domain 5    score: 23.1 bits;  conditional E-value: 1.6e-08
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G +PL lAa +g+ + v+ Lls+GAd    d
  MMETSP0890-20130614|4422_1 183 GVSPLALAAANGQQNAVEILLSHGADAQQID 213
                 789***********************87766 PP

  == domain 6    score: -3.9 bits;  conditional E-value: 6
                 SCBHHHHHH CS
  PF00023.25   2 GfTPLHlAa 10 
                 G +PL +A+
  MMETSP0890-20130614|4422_1 216 GLSPLAVAS 224
                 789999997 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.013
                 HHHHHHTT....HHHHHHHHHHTTSS CS
  PF00023.25   6 LHlAalrg....nlevvklLlsqGAd 27 
                 L lA++++    +++ +  Ll++G d
  MMETSP0890-20130614|4422_1 309 LCLAVRYNknssHYDLLVVLLDAGID 334
                 789********************987 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.012
                 BHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   4 TPLHlAalrgnlevvklLls 23 
                 TPL lA++++++  ++ Lls
  MMETSP0890-20130614|4422_1 351 TPLLLAIEKDDILLARALLS 370
                 9*****************98 PP

  == domain 9    score: 11.7 bits;  conditional E-value: 6.9e-05
                 BHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdl 28 
                 +PL  A+ +g++ ++  Ll++GA+ 
  MMETSP0890-20130614|4422_1 395 SPLLTAVVKGRVHIAAALLDAGANC 419
                 79*********************95 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0013       2.9       4      29 ..      17      42 ..      13      43 .. 0.89
   2 !   22.7   0.0   2.7e-08   6.2e-05       1      29 [.      79     107 ..      79     108 .. 0.92
   3 !   18.1   0.0   8.3e-07    0.0019       2      28 ..     114     140 ..     113     141 .. 0.95
   4 !   11.0   0.0   0.00017      0.38       4      28 ..     151     175 ..     149     177 .. 0.95
   5 !   16.3   0.0   3.3e-06    0.0074       2      27 ..     183     208 ..     182     211 .. 0.93
   6 !    6.2   0.1    0.0057        13       8      29 ..     311     337 ..     306     338 .. 0.75
   7 ?    4.0   0.0      0.03        69       4      23 ..     351     370 ..     349     378 .. 0.92
   8 !    9.5   0.0   0.00049       1.1       4      27 ..     395     418 ..     393     421 .. 0.92
   9 ?    5.2   0.0     0.012        28       3      28 ..     433     460 ..     431     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0013
   PF13606.1  4 TpLhlAasngrielveaLlengadin 29
                +pL++Aa  g i  v+aLl+ ga+++
  MMETSP0890-20130614|4422_1 17 SPLYIAANEGFIHSVNALLQLGANPD 42
                79*********************987 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 2.7e-08
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                 nG  pLh Aa++g++++++aL+++gad++
  MMETSP0890-20130614|4422_1  79 NGARPLHAAAERGHTAVAQALINAGADLD 107
                 5667***********************96 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 8.3e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G TpL+lAa++++ + ++ L+++ga+i
  MMETSP0890-20130614|4422_1 114 GLTPLMLAAQHNQANSIRTLISHGAQI 140
                 89**********************987 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00017
   PF13606.1   4 TpLhlAasngrielveaLlengadi 28 
                 T+L +Aa  g++++++ Ll++ga++
  MMETSP0890-20130614|4422_1 151 TALSYAAVGGHLDALQTLLDAGANP 175
                 9**********************97 PP

  == domain 5    score: 16.3 bits;  conditional E-value: 3.3e-06
   PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                 G +pL lAa ng+ ++ve+Ll++gad
  MMETSP0890-20130614|4422_1 183 GVSPLALAAANGQQNAVEILLSHGAD 208
                 7799*********************9 PP

  == domain 6    score: 6.2 bits;  conditional E-value: 0.0057
   PF13606.1   8 lAasng....rielveaLlengad.in 29 
                 lA++++    +++l+  Ll++g+d +n
  MMETSP0890-20130614|4422_1 311 LAVRYNknssHYDLLVVLLDAGIDdPN 337
                 68885534447***********97577 PP

  == domain 7    score: 4.0 bits;  conditional E-value: 0.03
   PF13606.1   4 TpLhlAasngrielveaLle 23 
                 TpL lA+++  i l++aLl+
  MMETSP0890-20130614|4422_1 351 TPLLLAIEKDDILLARALLS 370
                 9*****************97 PP

  == domain 8    score: 9.5 bits;  conditional E-value: 0.00049
   PF13606.1   4 TpLhlAasngrielveaLlengad 27 
                 +pL +A+ +gr+ ++ aLl++ga+
  MMETSP0890-20130614|4422_1 395 SPLLTAVVKGRVHIAAALLDAGAN 418
                 79********************98 PP

  == domain 9    score: 5.2 bits;  conditional E-value: 0.012
   PF13606.1   3 nTpLhlAasngrielveaLleng..adi 28 
                 +++L++A s++  +++++L +ng  +d+
  MMETSP0890-20130614|4422_1 433 DNLLDIARSRRDFDMLQLLSRNGdrCDV 460
                 57899999999**********9644777 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00022      0.49       8      43 ..       6      42 ..       2      45 .. 0.76
   2 !   20.9   0.1   1.2e-07   0.00027       9      43 ..      73     107 ..      72     108 .. 0.93
   3 !   11.3   0.1   0.00013      0.29      16      41 ..     114     139 ..     111     148 .. 0.84
   4 !   15.9   0.1   4.4e-06      0.01       9      44 ..     145     177 ..     133     182 .. 0.76
   5 !   25.6   0.1   3.9e-09   8.8e-06      13      56 .]     180     223 ..     179     223 .. 0.94
   6 ?   -1.6   0.0       1.4   3.2e+03      15      36 ..     272     293 ..     261     312 .. 0.73
   7 ?    2.2   0.0     0.089     2e+02       1      36 [.     328     369 ..     328     380 .. 0.81
   8 !    8.1   0.1    0.0013         3       6      43 ..     386     420 ..     383     439 .. 0.88
   9 ?   -1.0   0.0       0.9   2.1e+03      18      41 ..     434     459 ..     422     464 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00022
   PF13857.1  8 dvnatdeggn.tpLhlAakggalevvrlLlapgadln 43
                d+n+  ++g  +pL++Aa+ g  + v  Ll+ ga+++
  MMETSP0890-20130614|4422_1  6 DINTATLNGDtSPLYIAANEGFIHSVNALLQLGANPD 42
                44444444444*******************9999876 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.2e-07
   PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadln 43 
                 +n+++ +g  pLh Aa++g++ v++ L+++gadl+
  MMETSP0890-20130614|4422_1  73 PNQEEANGARPLHAAAERGHTAVAQALINAGADLD 107
                 7899999*************************985 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00013
   PF13857.1  16 gntpLhlAakggalevvrlLlapgad 41 
                 g tpL+lAa +++++ +r L+ +ga 
  MMETSP0890-20130614|4422_1 114 GLTPLMLAAQHNQANSIRTLISHGAQ 139
                 78******************955554 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 4.4e-06
   PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadlnl 44 
                 +na  +   t+L +Aa gg+l++++ Ll++ga++ +
  MMETSP0890-20130614|4422_1 145 HNAFSG---TALSYAAVGGHLDALQTLLDAGANPQT 177
                 344444...*******************99999765 PP

  == domain 5    score: 25.6 bits;  conditional E-value: 3.9e-09
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 + +g++pL lAa +g++++v++Ll +gad+   d++gl++l +A
  MMETSP0890-20130614|4422_1 180 RSAGVSPLALAAANGQQNAVEILLSHGADAQQIDNSGLSPLAVA 223
                 67899***********************************9776 PP

  == domain 6    score: -1.6 bits;  conditional E-value: 1.4
   PF13857.1  15 ggntpLhlAakggalevvrlLl 36 
                 ++n +L   a+ g++ ++  Ll
  MMETSP0890-20130614|4422_1 272 ESNQALRDVARTGDAYFASQLL 293
                 4557888888888888888888 PP

  == domain 7    score: 2.2 bits;  conditional E-value: 0.089
   PF13857.1   1 Llehgpadvnatdeggn......tpLhlAakggalevvrlLl 36 
                 Ll++g +d+na +e+        tpL lA+++ +  ++r Ll
  MMETSP0890-20130614|4422_1 328 LLDAGIDDPNAICEFTDrsgprvTPLLLAIEKDDILLARALL 369
                 78888888888888888888888*******998887777777 PP

  == domain 8    score: 8.1 bits;  conditional E-value: 0.0013
   PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLlapgadln 43 
                 ++d n+ ++   +pL +A+ +g+++++  Ll++ga++ 
  MMETSP0890-20130614|4422_1 386 SPDTNTIYK---SPLLTAVVKGRVHIAAALLDAGANCA 420
                 566777777...9******************9999985 PP

  == domain 9    score: -1.0 bits;  conditional E-value: 0.9
   PF13857.1  18 tpLhlAakggalevvrlLl..apgad 41 
                 ++L +A ++ + ++++lL     ++d
  MMETSP0890-20130614|4422_1 434 NLLDIARSRRDFDMLQLLSrnGDRCD 459
                 56667777888888888875555555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0074        17      25      54 .]       5      35 ..       4      35 .. 0.85
   2 !   13.9   0.0   2.3e-05     0.053      33      54 .]      79     100 ..      66     107 .. 0.73
   3 !   28.7   0.1   5.3e-10   1.2e-06       1      54 []     114     169 ..     114     169 .. 0.97
   4 !   14.4   0.0   1.6e-05     0.036       2      38 ..     184     220 ..     183     225 .. 0.90
   5 ?   -3.4   0.0         6   1.4e+04      43      54 .]     251     262 ..     249     262 .. 0.82
   6 !    8.4   0.1    0.0012       2.8       5      53 ..     309     368 ..     305     369 .. 0.75
   7 !   13.0   0.1   4.3e-05     0.098       4      53 ..     396     451 ..     394     451 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0074
   PF13637.1 25 idinrtdesGnt.aLhiAalrgnieilklLl 54
                +din    +G+t +L+iAa  g+i+ ++ Ll
  MMETSP0890-20130614|4422_1  5 ADINTATLNGDTsPLYIAANEGFIHSVNALL 35
                5899996667766**************9997 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.3e-05
   PF13637.1  33 sGntaLhiAalrgnieilklLl 54 
                 +G  +Lh Aa+rg+  +++ L+
  MMETSP0890-20130614|4422_1  79 NGARPLHAAAERGHTAVAQALI 100
                 6777777777777777777775 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 5.3e-10
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt..desGntaLhiAalrgnieilklLl 54 
                 glt+L+ aa+++    ++ L+++g++i r+  +++  taL +Aa +g++++l+ Ll
  MMETSP0890-20130614|4422_1 114 GLTPLMLAAQHNQANSIRTLISHGAQIERQahNAFSGTALSYAAVGGHLDALQTLL 169
                 689**************************************************997 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 1.6e-05
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaL 38 
                 +++L  aa+ g   +v+ Ll++g+d  ++d+sG ++L
  MMETSP0890-20130614|4422_1 184 VSPLALAAANGQQNAVEILLSHGADAQQIDNSGLSPL 220
                 689999*******************8888*******9 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 6
   PF13637.1  43 lrgnieilklLl 54 
                  rg+ + + +Ll
  MMETSP0890-20130614|4422_1 251 ARGDTQRAAYLL 262
                 689999999997 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.0012
   PF13637.1   5 Lhyaai....sgrlelvklLlekgid.inrt....desGn..taLhiAalrgnieilklL 53 
                 L  a++    s++++l+  Ll+ gid +n++    d+sG   t+L +A+++ +i +++ L
  MMETSP0890-20130614|4422_1 309 LCLAVRynknSSHYDLLVVLLDAGIDdPNAIceftDRSGPrvTPLLLAIEKDDILLARAL 368
                 666677777799***************777755466665455899999998887666665 PP

  == domain 7    score: 13.0 bits;  conditional E-value: 4.3e-05
   PF13637.1   4 aLhyaaisgrlelvklLlekgid....inrt..desGntaLhiAalrgnieilklL 53 
                 +L  a+ +gr+ +++ Ll+ g++    +     +++ +++L+iA +r ++++l+lL
  MMETSP0890-20130614|4422_1 396 PLLTAVVKGRVHIAAALLDAGANcailVASSkdPSRHDNLLDIARSRRDFDMLQLL 451
                 6778999****************6655333367799******************98 PP

>> PF00114.14  Pilin (bacterial filament)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.085   1.9e+02      10      45 ..      86     121 ..      84     159 .. 0.71
   2 ?    7.4   0.2    0.0027       6.2       8      51 ..     188     231 ..     168     286 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.085
                 HHHCCHHHHHHHHHHH----BTCCCCC----TCSCE CS
  PF00114.14  10 alasglKtavaeaalnegktpttaaadiGlasstai 45 
                 a+a+ + tava a++n+g+  +   + +Gl++    
  MMETSP0890-20130614|4422_1  86 AAAERGHTAVAQALINAGADLDGGFSMAGLTPLMLA 121
                 6789999************99999988888875443 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0027
                 HHHHHCCHHHHHHHHHHH----BTCCCCC----TCSCE-E..EEEE CS
  PF00114.14   8 alalasglKtavaeaalnegktpttaaadiGlasstaicg..visv 51 
                 ala+a+g++ av e++l++g+ +++ ++  Gl++ +   +  v++v
  MMETSP0890-20130614|4422_1 188 ALAAANGQQNAV-EILLSHGADAQQIDN-SGLSPLAVASTdaVTKV 231
                 7999********.***********9999.55555444322232222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.89
# Mc/sec: 1254.72
//
Query:       MMETSP0890-20130614|4419_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-37  127.8  11.2    1.2e-11   44.4   0.1    5.9  6  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    1.4e-17   62.6  26.9    1.1e-06   27.9   0.2    6.3  6  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
    8.8e-05   21.9   0.1         14    6.0   0.0    5.3  5  PF07494.6  Two component regulator propeller


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.96   4.4e+03      40      50 ..     197     207 ..     194     208 .. 0.80
   2 !   29.5   0.1   1.2e-10   5.6e-07       1      51 []     211     270 ..     211     270 .. 0.98
   3 !    5.1   0.0    0.0051        23      36      51 .]     303     318 ..     284     318 .. 0.83
   4 !   44.4   0.1   2.7e-15   1.2e-11       1      51 []     321     373 ..     321     373 .. 0.86
   5 !   35.3   0.0     2e-12     9e-09       1      50 [.     376     424 ..     376     425 .. 0.98
   6 !   16.6   0.0   1.4e-06    0.0062       2      34 ..     429     460 ..     429     468 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.96
                 EEE-----EEE CS
  PF00415.13  40 qvacGgsHtla 50 
                  va+Gg H l+
  MMETSP0890-20130614|4419_1 197 LVAAGGGHELL 207
                 59*****9765 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.2e-10
                 TTEEEEE---------.--------S-EE-GGG--.........----EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsg.........vrvvqvacGgsHtlal 51 
                 +G +ys Gr+  GqLG+g++  ++  P+++   ++          ++++va+G++H+la+
  MMETSP0890-20130614|4419_1 211 NGLLYSRGRGPCGQLGLGPQVFECDNPQLILYARHtnnssrhtnLKIQHVAAGAHHSLAI 270
                 699*******************************************************97 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0051
                 ----EEE-----EEEE CS
  PF00415.13  36 vrvvqvacGgsHtlal 51 
                 + +++ a+G +Htl++
  MMETSP0890-20130614|4419_1 303 NIIKHCAAGTHHTLCV 318
                 67999*********97 PP

  == domain 4    score: 44.4 bits;  conditional E-value: 2.7e-15
                 TTEEEEE---------...--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLG..kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 +GrV++ G+n++GqLG      + ++  P++++ l+g r+++va+G++H+l+l
  MMETSP0890-20130614|4419_1 321 QGRVWALGKNTHGQLGlgGRRLTAELPQPRLISALQGSRAIAVAAGHFHSLVL 373
                 5***************655566666666677*******************986 PP

  == domain 5    score: 35.3 bits;  conditional E-value: 2e-12
                 TTEEEEE---------.--------S-EE-GGG------EEE-----EEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtla 50 
                 dG +y++G + +G+LG +g++ n   P +v +   v+v + a+G sH+++
  MMETSP0890-20130614|4419_1 376 DGALYAFGLGADGRLG-LGHCLNAPLPERVLLSCEVHVADLAAGVSHSAC 424
                 8***************.*******************************97 PP

  == domain 6    score: 16.6 bits;  conditional E-value: 1.4e-06
                 TEEEEE---------.--------S-EE-GGG- CS
  PF00415.13   2 GrVysWGrndyGqLGkggseenvlvPvkvegls 34 
                 Gr+y WG   +G LG + + e  + P++v +  
  MMETSP0890-20130614|4419_1 429 GRLYVWGDVARGALG-HRDVEASRSPRLVDLSL 460
                 9**************.***********997765 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1   0.00063       2.9       4      30 .]     198     224 ..     196     224 .. 0.97
   2 !   14.4   0.2   4.3e-06      0.02       3      21 ..     259     277 ..     257     281 .. 0.89
   3 !   12.5   0.6   1.6e-05     0.075       5      30 .]     309     334 ..     305     334 .. 0.95
   4 !   27.9   0.2   2.4e-10   1.1e-06       2      29 ..     361     388 ..     360     389 .. 0.94
   5 !   12.1   1.4   2.3e-05       0.1       1      25 [.     412     436 ..     412     440 .. 0.96
   6 ?    3.0   0.0     0.016        71      11      22 ..     482     493 ..     467     494 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00063
                 EE-----EEEE-.---EEEE---TTST CS
   PF13540.1   4 vsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 v+aGg H + + ++G +++ G++ +GQ
  MMETSP0890-20130614|4419_1 198 VAAGGGHELLINDNGLLYSRGRGPCGQ 224
                 89************************9 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4.3e-06
                 EEE-----EEEE-.---EE CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVl 21 
                 +v+aG+ H++a++++G ++
  MMETSP0890-20130614|4419_1 259 HVAAGAHHSLAIDTSGNLW 277
                 7****************99 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 1.6e-05
                 E-----EEEE-.---EEEE---TTST CS
   PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 +aG  Ht+ ++  G+V++ G N++GQ
  MMETSP0890-20130614|4419_1 309 AAGTHHTLCVDYQGRVWALGKNTHGQ 334
                 79999********************9 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 2.4e-10
                 -EEE-----EEEE-.---EEEE---TTS CS
   PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWGsNssG 29 
                 ++v+aG +H+++L++dGa++++G + +G
  MMETSP0890-20130614|4419_1 361 IAVAAGHFHSLVLDDDGALYAFGLGADG 388
                 79**********************9999 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 2.3e-05
                 --EEE-----EEEE-.---EEEE-- CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGs 25 
                 V++++aG++H+   +s G+++ WG+
  MMETSP0890-20130614|4419_1 412 VADLAAGVSHSACTDSLGRLYVWGD 436
                 889*********************8 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.016
                 EEEE-.---EEE CS
   PF13540.1  11 tcaLtsdGaVlc 22 
                 t+aL+++G +++
  MMETSP0890-20130614|4419_1 482 TLALDENGHLWS 493
                 89********97 PP

>> PF07494.6  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.041   1.9e+02       9      19 ..     267     277 ..     263     280 .. 0.90
   2 !    6.0   0.0     0.003        14       9      22 ..     315     328 ..     312     330 .. 0.84
   3 ?    0.9   0.0      0.14   6.2e+02       5      19 ..     366     380 ..     363     383 .. 0.85
   4 ?    1.2   0.0      0.11     5e+02       3      20 ..     416     433 ..     414     433 .. 0.81
   5 ?    3.0   0.0     0.028   1.3e+02       9      19 ..     482     492 ..     477     493 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.041
   PF07494.6   9 aileDsdGrlW 19 
                 +++ D  G+lW
  MMETSP0890-20130614|4419_1 267 SLAIDTSGNLW 277
                 8999******* PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.003
   PF07494.6   9 aileDsdGrlWvGt 22 
                 +++ D +Gr+W  +
  MMETSP0890-20130614|4419_1 315 TLCVDYQGRVWALG 328
                 79*********765 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.14
   PF07494.6   5 nnvtaileDsdGrlW 19 
                 +++++++ D dG l+
  MMETSP0890-20130614|4419_1 366 GHFHSLVLDDDGALY 380
                 6789********987 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.11
   PF07494.6   3 psnnvtaileDsdGrlWv 20 
                   +  ++ + Ds Grl+v
  MMETSP0890-20130614|4419_1 416 AAGVSHSACTDSLGRLYV 433
                 55666799********97 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.028
   PF07494.6   9 aileDsdGrlW 19 
                 +++ D +G+lW
  MMETSP0890-20130614|4419_1 482 TLALDENGHLW 492
                 6889******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.47s 00:00:01.23 Elapsed: 00:00:01.04
# Mc/sec: 1320.30
//
Query:       MMETSP0890-20130614|4427_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-09   36.8   0.8    5.8e-06   26.2   0.6    2.1  1  PF12697.2  Alpha/beta hydrolase family
    4.1e-06   26.5   0.0    5.2e-06   26.1   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    5.8e-05   22.6   0.0       0.01   15.3   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold
    0.00029   20.5   0.0    0.00033   20.3   0.0    1.2  1  PF01083.17 Cutinase
  ------ inclusion threshold ------
      0.023   15.3   0.1      0.037   14.6   0.0    1.4  1  PF04448.7  Protein of unknown function (DUF551)
      0.036   13.1   0.0        2.7    7.0   0.0    2.2  2  PF00326.16 Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.6   2.6e-09   5.8e-06      66     191 ..      18      93 ..       3     139 .. 0.52

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.6e-09
                 --EEEE--------HHHHHH----.EEEEEEE------STT...............---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHH CS
   PF12697.2  66 rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...............alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvp 191
                   +v+vG+S+G+ v+++++a+rpdl r  ++i+ p++ p +                                      ++++                                           v   +++g+ D++++
  MMETSP0890-20130614|4427_1  18 SNIVFVGYSYGCRVIARLLASRPDLARCALFISYPLFDPVPpnrahngmfradelaS----------------------VPSH-------------------------------------------VTLRLMSGASDHFLA 93 
                 679*********************999999999999665543333333333322210......................1111...........................................222222222222221 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.3e-09   5.2e-06      56     142 .]      17     128 ..       2     128 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.3e-09
   PF12695.2  56 dleriilvGhSlGGgvalelagrddrvkglvllapfpdgedlakltl.................pvllihGtrDgvv.........ppeeaeklakalpgdaelvviegasHf 142
                 d ++i++vG S+G +v+++l +++++++   l+ ++p  ++++ +++                  + l+ G++D+++          p++++ ++k+ ++++ l+v+++ +H+
  MMETSP0890-20130614|4427_1  17 D-SNIVFVGYSYGCRVIARLLASRPDLARCALFISYPLFDPVPPNRAhngmfradelasvpshvTLRLMSGASDHFLathwqplpqGPDALRMTMKRTKATSSLHVLPDTGHC 128
                 4.79******************9988888887777755444444444445555555566666669999*********6655555555555555999999*************6 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.5e-06      0.01      39      91 ..      13      73 ..       6      99 .. 0.74
   2 !    5.7   0.0    0.0036       8.3     197     223 ..     110     136 ..     100     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.5e-06
                HHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--........HHSHCSHSTTCH CS
  PF00561.15 39 dalglkkltlvGhSmGGmialayaaeypdrvkamvllgtva........vlsdglssdvln 91
                +++ + ++++vG+S+G++  + ++a  pd  + + +++ ++         ++ ++ +d+l+
  MMETSP0890-20130614|4427_1 13 ESCLDSNIVFVGYSYGCRVIARLLASRPDLARCALFISYPLfdpvppnrAHNGMFRADELA 73
                5556677**********************88877777776666666666555555555555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0036
                 HHHCSTTEEEEEETTHHCSHHHHSCHH CS
  PF00561.15 197 laelipksqlvvidgpgHlafldkpde 223
                 ++ +   s+l+v++++gH++++d +++
  MMETSP0890-20130614|4427_1 110 MKRTKATSSLHVLPDTGHCIHFDSDSR 136
                 5556667899*************9876 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-07   0.00033      68     101 ..       5      38 ..       1      74 [. 0.88

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHH-TTSEEEE---B---HHHHHHHHH CS
  PF01083.17  68 arlvnsaaskCPntkivlgGYSqGaavmdnaiag 101
                  ++++++a++C +++iv +GYS G+ v++  +a 
  MMETSP0890-20130614|4427_1   5 MQMITKLAESCLDSNIVFVGYSYGCRVIARLLAS 38 
                 589************************9887765 PP

>> PF04448.7  Protein of unknown function (DUF551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.6e-05     0.037      53      68 ..      88     103 ..      67     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.6e-05
   PF04448.7  53 fkeekvtHWmPLPepP 68 
                 ++++ +tHW+PLP+ P
  MMETSP0890-20130614|4427_1  88 SDHFLATHWQPLPQGP 103
                 567789*******988 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0012       2.7      64      93 ..      18      47 ..       5      57 .. 0.86
   2 ?    4.4   0.0    0.0075        17     166     196 ..     106     136 ..      63     143 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0012
                GGEEE--------HHHHHHHH-GGG---EE CS
  PF00326.16 64 drlaitGgSyGGylvgaalnqrpdlFkaav 93
                ++++  G SyG  +++  l+ rpdl ++a+
  MMETSP0890-20130614|4427_1 18 SNIVFVGYSYGCRVIARLLASRPDLARCAL 47
                78999**********************996 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0075
                 HHHHHH..--SEEEEEES---------HHHH CS
  PF00326.16 166 lvaaLqkagknvlllifpdegHgigkprakv 196
                 l  ++++++ ++ l++ pd gH i  +++++
  MMETSP0890-20130614|4427_1 106 LRMTMKRTKATSSLHVLPDTGHCIHFDSDSR 136
                 44456677888***********988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.46s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 606.58
//
Query:       MMETSP0890-20130614|4426_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-09   34.8   4.6    8.9e-09   34.8   3.2    2.0  2  PF00628.24 PHD-finger
     0.0064   15.6   1.2      0.018   14.2   0.8    1.9  1  PF13831.1  PHD-finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   3.2   1.3e-12   8.9e-09       2      50 ..      45      93 ..      44      94 .. 0.91
   2 ?   -3.5   0.3       1.1   7.7e+03      28      36 ..     196     204 ..     195     209 .. 0.47

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.3e-12
                BTTTTCTCTTS-EEEBS....SSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24  2 CkiCgesdeegelvlCd....gCkewfHlkClglkleseekpegewlCeeCke 50
                C+iC+++++  +l+lCd    +C ++ H++Cl+l+    ++p+gew+C++C+ 
  MMETSP0890-20130614|4426_1 45 CAICSSDENAAQLLLCDgidqRCISTAHIYCLKLN----KIPDGEWYCPSCEA 93
                ****************977767************9....679999******86 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.1
                 TSSS-SSHH CS
  PF00628.24  28 Clglklese 36 
                 C++ k +++
  MMETSP0890-20130614|4426_1 196 CCNEKSSDN 204
                 444444333 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.8   2.6e-06     0.018       3      36 .]      56      92 ..      54      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.6e-06
   PF13831.1  3 pllvCs....kCsvaVHasCYGvseesegeeWlCrrCe 36
                +ll C+    +C    H  C + +++++g eW+C  Ce
  MMETSP0890-20130614|4426_1 56 QLLLCDgidqRCISTAHIYCLKLNKIPDG-EWYCPSCE 92
                567777777799999**************.*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       958  (0.0700702); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.70
# Mc/sec: 1386.46
//
Query:       MMETSP0890-20130614|4433_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   14.0   0.9      0.068   13.3   0.6    1.3  1  PF10152.4 Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6     5e-06     0.068      12      96 ..     161     249 ..     154     274 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5e-06
   PF10152.4  12 LNrFsaecEskLveiersLqqlElklqlLeakLas.idgleeledqd..elpappaaarrsggpppppgaraeaaaqe.aeaaraetpa 96 
                 LN+  +   +k+ ++++++qq+E++   ++   +s +d  +el + +   ++a++++a ++ggpppp +a ++ ++ + ++a+r+ +p+
  MMETSP0890-20130614|4433_1 161 LNERHQAEKEKIRKANEKMQQAEREFLKVDGEAESdVDIMSELRQRAsnMTNATSSTAYNRGGPPPPRPAGSDRKSSPsSTAPRPREPS 249
                 6766677778999999********99999999977466444443333338899999999999999999944433333303333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       934  (0.0683148); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.62
# Mc/sec: 1101.55
//
Query:       MMETSP0890-20130614|4442_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 320.94
//
Query:       MMETSP0890-20130614|4450_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-05   22.0   3.8    0.00031   20.4   2.6    1.7  1  PF04859.7  Plant protein of unknown function (DUF641)
     0.0031   17.3   2.5     0.0034   17.1   1.7    1.1  1  PF09486.5  Bacterial type III secretion protein (HrpB7)
     0.0048   15.4   6.1      0.005   15.4   4.2    1.0  1  PF08317.6  Spc7 kinetochore protein
     0.0063   15.6   5.8     0.0068   15.5   4.0    1.0  1  PF13851.1  Growth-arrest specific micro-tubule binding
     0.0072   15.6   2.9     0.0073   15.5   2.0    1.0  1  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
  ------ inclusion threshold ------
      0.014   15.0   9.2      0.052   13.2   6.4    1.8  1  PF12329.3  TATA element modulatory factor 1 DNA binding
      0.019   14.0   8.0      0.022   13.8   5.6    1.0  1  PF12072.3  Domain of unknown function (DUF3552)
       0.02   14.7   3.8       0.02   14.8   2.6    1.0  1  PF06818.10 Fez1
      0.022   14.5   7.2      0.022   14.4   5.0    1.0  1  PF08614.6  Autophagy protein 16 (ATG16)
      0.028   12.5   3.8      0.032   12.3   2.7    1.0  1  PF05911.6  Plant protein of unknown function (DUF869)
      0.037   13.7   3.0      0.039   13.6   2.1    1.0  1  PF06009.7  Laminin Domain II
      0.045   13.4   6.2      0.056   13.1   4.3    1.3  1  PF12718.2  Tropomyosin like
      0.053   13.0   4.9      0.058   12.8   3.4    1.1  1  PF10828.3  Protein of unknown function (DUF2570)
      0.057   13.5   2.7       0.87    9.7   1.7    2.0  2  PF08581.5  Tup N-terminal
      0.064   13.0   5.5        0.1   12.4   3.8    1.4  1  PF13863.1  Domain of unknown function (DUF4200)
      0.067   12.9   2.7      0.085   12.6   1.9    1.2  1  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
      0.067   12.6   4.4      0.076   12.5   3.0    1.0  1  PF04048.9  Sec8 exocyst complex component specific domain
      0.068   12.9   4.5       0.07   12.9   3.1    1.0  1  PF07200.8  Modifier of rudimentary (Mod(r)) protein
      0.069   12.6   7.9      0.069   12.6   5.5    1.0  1  PF04156.9  IncA protein
      0.077   12.4   5.1      0.087   12.2   3.6    1.2  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      0.086   12.1   4.6       0.11   11.8   3.2    1.1  1  PF13870.1  Domain of unknown function (DUF4201)
      0.099   12.4   7.2       0.13   12.0   5.0    1.2  1  PF08826.5  DMPK coiled coil domain like
       0.11   12.1   1.5       0.13   12.0   1.0    1.2  1  PF13543.1  SAM like domain present in kinase suppressor RAS 1
       0.12   12.2   0.2       0.94    9.3   0.1    2.0  1  PF00486.23 Transcriptional regulatory protein, C terminal
       0.12   11.7   7.1        0.4    9.9   2.7    1.9  2  PF06810.6  Phage minor structural protein GP20
       0.15   10.4   4.0       0.14   10.4   2.8    1.0  1  PF13166.1  AAA domain
       0.16   12.2   3.1          1    9.6   0.5    2.0  2  PF12711.2  Kinesin motor
       0.17   11.4   5.3       0.35   10.4   3.7    1.5  1  PF07544.8  RNA polymerase II transcription mediator complex subunit 9
       0.18   10.3   3.9        0.2   10.2   2.7    1.0  1  PF10498.4  Intra-flagellar transport protein 57
       0.19   10.7   1.6       0.19   10.7   1.1    1.0  1  PF04582.7  Reovirus sigma C capsid protein
       0.21    8.7   5.2        0.2    8.8   3.6    1.0  1  PF12128.3  Protein of unknown function (DUF3584)
       0.27   11.2   2.3       0.32   10.9   1.6    1.1  1  PF08702.5  Fibrinogen alpha/beta chain family
       0.27   11.1   3.8        0.3   10.9   2.6    1.2  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.39   10.1   2.1       0.39   10.1   1.4    1.0  1  PF12999.2  Glucosidase II beta subunit-like
       0.39    9.4   6.0       0.39    9.5   4.2    1.0  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.43   10.1   4.3        0.5    9.9   3.0    1.2  1  PF05064.8  Nsp1-like C-terminal region
       0.48    9.8   5.3       0.56    9.6   3.6    1.0  1  PF05266.9  Protein of unknown function (DUF724)
       0.68    8.4   4.7       0.67    8.4   3.2    1.0  1  PF02388.11 FemAB family
       0.71    9.5   4.3       0.84    9.2   3.0    1.1  1  PF06102.7  Domain of unknown function (DUF947)
       0.74   10.1   6.0        1.5    9.1   4.2    1.6  1  PF13600.1  N-terminal domain of unknown function (DUF4140)
       0.98    9.3   8.9          1    9.2   6.2    1.0  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
       0.98    8.1   5.2          1    8.0   3.6    1.0  1  PF04111.7  Autophagy protein Apg6
        1.2    9.2   5.0        7.5    6.7   0.6    2.0  2  PF11488.3  Transcriptional regulatory protein LGE1
        1.6    8.5   7.5        1.6    8.5   5.2    1.0  1  PF03938.9  Outer membrane protein (OmpH-like)
        1.8    8.8   6.7        2.1    8.7   4.7    1.1  1  PF11740.3  Plasmid replication region DNA-binding N-term
        2.6    7.3   5.5        5.1    6.4   3.8    1.5  1  PF05529.7  B-cell receptor-associated protein 31-like
          5    6.5   6.7          9    5.7   4.6    1.5  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.6   1.1e-06   0.00031      71     118 ..       7      54 ..       2      55 .] 0.90

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.1e-06
   PF04859.7  71 kgsakdailaaeiqeqrsllktyeivvkkLeaelrakdseieelrekl 118
                 + +++ + l a+++++ + lk+ e+ +++L ++l+ +d+ei  lrekl
  MMETSP0890-20130614|4450_1   7 SRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54 
                 445788999*************************************98 PP

>> PF09486.5  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.7   1.2e-05    0.0034      19      62 ..       7      50 ..       1      54 [. 0.88

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-05
   PF09486.5 19 rlraelsalraalealdrelaecraaveakadrlaahdarlddl 62
                   +e+s+lra+le+ d+ l++ +++++  ++ l++ d+++ +l
  MMETSP0890-20130614|4450_1  7 SRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTL 50
                55799*********************************999986 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   4.2   1.7e-05     0.005     208     253 ..       9      54 ..       2      55 .] 0.88

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.7e-05
   PF08317.6 208 seeleklreeLssleekieekrkkleeleeelqelkkkiealkekk 253
                  ee+++lr +L+++++++++ ++k ++l++ lq+ +++i++l+ek+
  MMETSP0890-20130614|4450_1   9 DEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54 
                 589999*******************************999999875 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.0   2.3e-05    0.0068      30      78 ..       6      54 ..       3      55 .] 0.92

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.3e-05
   PF13851.1 30 kslkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkkl 78
                +s  eei +l++k e+n++ ++  + + ++l++ L+  +ee   L++kl
  MMETSP0890-20130614|4450_1  6 QSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54
                67789****************************************9998 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.0   2.5e-05    0.0073     125     172 ..       4      54 ..       1      55 [] 0.84

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-05
   PF05791.6 125 evkqlleeLkafknklakdtksfk...sdvdeltsiLksqgadieklkkei 172
                 + ++  ee+ ++++kl+++ +++k   s+++ lt+ L+s + +i++l++++
  MMETSP0890-20130614|4450_1   4 SLQSRDEEISNLRAKLEQNDQTLKaaeSKAQDLTQSLQSRDEEISTLREKL 54 
                 6677889***************983324568999*************9987 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   6.4   0.00018     0.052      31      69 ..       8      46 ..       2      55 .] 0.56

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00018
   PF12329.3 31 hnntikkLrkknkelekeieelkkkleklekeleeleer 69
                  ++i +Lr+k+++++++++ +++k ++l+++l++  e+
  MMETSP0890-20130614|4450_1  8 RDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEE 46
                445666666666666666666666666666666554443 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.6   7.4e-05     0.022      99     147 ..       3      51 ..       1      53 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.4e-05
   PF12072.3  99 eslekkeekleekekelkqkeqsleekeeeveelveeqreeLerisgLt 147
                 +sl+ ++e++++ +++l+q+ q+l++ e++++ l+++ +++ e+is L 
  MMETSP0890-20130614|4450_1   3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLR 51 
                 6888999999999999999999999999999999999999999999886 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   2.6   6.8e-05      0.02      25      71 ..       4      50 ..       1      55 [] 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.8e-05
  PF06818.10 25 elaqkaseilsLraqlrearaelqeseeklqelkdalrtktleLevc 71
                 l+ +  ei  Lra+l +   +l++ e+k+q+l ++l++++ e+   
  MMETSP0890-20130614|4450_1  4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTL 50
                5788999*********************************9988665 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   5.0   7.4e-05     0.022     101     150 ..       2      51 ..       1      55 [] 0.70

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.4e-05
   PF08614.6 101 neeleekreeiaekekelaelqseiksleeeikdleeelkekekaletlq 150
                 +++l+ ++eei++ +++l++  +++k+ e +++dl ++l+ ++  + tl+
  MMETSP0890-20130614|4450_1   2 TQSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLR 51 
                 56777777777777777777777777777777777777777777777665 PP

>> PF05911.6  Plant protein of unknown function (DUF869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.7   0.00011     0.032      86     127 ..      12      52 ..       2      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00011
   PF05911.6  86 vkaeLekkleelekelaraaaendalsrsLeekeklivelse 127
                 + ++L +kle+  + l++a++  + l++sL+++++ i+ l+e
  MMETSP0890-20130614|4450_1  12 I-SNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLRE 52 
                 3.48999999999999999999999*********99999988 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.1   0.00013     0.039      22      68 ..       8      54 ..       2      55 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00013
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7 22 istnventkaklsklngsveetnekvksankavrdarrsvrklekla 68
                 +++++n++akl++ +++++  + k+++ ++ +++  +++++l++++
  MMETSP0890-20130614|4450_1  8 RDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54
                5789***************************************9986 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.3   0.00019     0.056      29      74 ..       4      49 ..       1      55 [] 0.62

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00019
   PF12718.2 29 enekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkte 74
                + ++++eei++L  K++q ++ +  +e++ ++ +++l+  +++ ++
  MMETSP0890-20130614|4450_1  4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEIST 49
                5566677777777777777777777777777777766666555443 PP

>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.4    0.0002     0.058      23      64 ..       8      49 ..       2      54 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.0002
   PF10828.3 23 qsqkidsLkaenkaqaqtieqqekankrLseaLeqErqAVek 64
                  ++i++L+a+ ++++qt++  e   + L+++L+   + + +
  MMETSP0890-20130614|4450_1  8 RDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEIST 49
                4578*****************************987666555 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2    0.0046       1.3      62      78 ..       8      24 ..       2      25 .. 0.86
   2 ?    9.7   1.7     0.003      0.87       6      48 ..      12      54 ..       9      55 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0046
   PF08581.5 62 YeeeiarLkreLeargg 78
                 +eei +L+++Le+ ++
  MMETSP0890-20130614|4450_1  8 RDEEISNLRAKLEQNDQ 24
                58************986 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.003
   PF08581.5  6 LdairaEfealsreassykaqkedyelkiqqqiqEleqirqtv 48
                + ++ra  e+  +  ++ +++ +d+ +++q++ +E+ ++r+++
  MMETSP0890-20130614|4450_1 12 ISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54
                5678888899999889999999999999999999999999886 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.8   0.00035       0.1      46      90 ..      10      54 ..       2      55 .] 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00035
   PF13863.1 46 eslikfnkflkdneakreraekkaeeekkekkekeeeikklkaql 90
                e++ +    l++n++  ++ae ka++ +++ ++++eei  l+++l
  MMETSP0890-20130614|4450_1 10 EEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54
                556677778999999999999999999999999999999999886 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.9   0.00029     0.085      62     111 ..       3      52 ..       2      55 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00029
   PF06148.6  62 gsLvglqeeleelesplaaarkkvesvrsklseveeeveskikekkdlee 111
                 +sL++ +ee+++l+ +l++  ++++++ sk ++  + ++s+ +e + l+e
  MMETSP0890-20130614|4450_1   3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLRE 52 
                 589999*******9999999999999999999999999988777666665 PP

>> PF04048.9  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.0   0.00026     0.076      79     127 ..       3      51 ..       1      53 [. 0.94

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00026
   PF04048.9  79 ssitesqekirelKesleeakkklstrkkeLkeLnaesakykevielLd 127
                 +s+++  e+i++l+ +le+  + l++ +++ ++L ++ +  +e i++L 
  MMETSP0890-20130614|4450_1   3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLR 51 
                 7999999**************************************9997 PP

>> PF07200.8  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.1   0.00024      0.07      52      93 ..       7      48 ..       2      55 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00024
                ...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
   PF07200.8 52 ekepqleelkaqlqdkleelkkleekyeekkqkldelsskys 93
                ++ +++++l+a+l+++ ++lk++e+k +++ q l++  +++s
  MMETSP0890-20130614|4450_1  7 SRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEIS 48
                46789******************************9999887 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.5   0.00024     0.069     103     150 ..       4      51 ..       1      55 [] 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00024
   PF04156.9 103 rlaeleseledleedlellqeelksleerlesleesikelakeirelr 150
                  l++  +e+++l+  le++ + lk+ e++ ++l++s+++  +ei+ lr
  MMETSP0890-20130614|4450_1   4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLR 51 
                 456666777888888888888888888888888888888888888887 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.6    0.0003     0.087      74     124 ..       5      53 ..       1      55 [] 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0003
   PF07106.8  74 lnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkke 124
                 l+  d+ei++lr+++++  q+ + +e++ ++Lt++l+     eei++l+++
  MMETSP0890-20130614|4450_1   5 LQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQ--SRDEEISTLREK 53 
                 5556788899999999999999999999999998884..334666666665 PP

>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.2   0.00037      0.11      57     107 ..       4      54 ..       2      55 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00037
   PF13870.1  57 kieernkeLkkLkkkttktvhalthlkeklhfleeeleelkkelkekeekl 107
                  +++r++e+++L+ k  ++ ++l+    k++ l+++l+ + +e+ ++ ekl
  MMETSP0890-20130614|4450_1   4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54 
                 578899999999999999999999999999999999999999999888775 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.0   0.00046      0.13      14      59 ..       6      51 ..       2      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00046
   PF08826.5 14 QslqeeLekvkaanlafeskLkeaEkknreLeeeleqLkkemEelr 59
                Qs  ee+ + +a   + +  Lk aE+k ++L + l++  +e+  lr
  MMETSP0890-20130614|4450_1  6 QSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLR 51
                6667899999999999999******************999998887 PP

>> PF13543.1  SAM like domain present in kinase suppressor RAS 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.0   0.00043      0.13      79     123 ..       8      52 ..       2      55 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00043
   PF13543.1  79 sqetieailkklltleqlLemsdeelkeilekvgaeeeevrrlla 123
                 ++e+i  + +kl   +q+L+  +++ +++ +++++++ee++ l++
  MMETSP0890-20130614|4450_1   8 RDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLRE 52 
                 678899998899999999999999999999999999999998875 PP

>> PF00486.23  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0032      0.94      49      63 ..      11      24 ..       3      53 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0032
                HHHHHHHHHHSSTTS CS
  PF00486.23 49 hisrLRkkledapke 63
                 is+LR kle++  +
  MMETSP0890-20130614|4450_1 11 EISNLRAKLEQND-Q 24
                69*********64.2 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5     0.016       4.7      34      55 ..       3      24 ..       1      29 [. 0.68
   2 ?    9.9   2.7    0.0014       0.4      14      49 ..      18      53 ..      16      55 .] 0.88

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.016
   PF06810.6 34 eqlkerdkqiedLkkkvkdnee 55
                + l+ rd++i++L++k ++n++
  MMETSP0890-20130614|4450_1  3 QSLQSRDEEISNLRAKLEQNDQ 24
                5678888888888887655543 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0014
   PF06810.6 14 diqeeKskldkaeeeldslkeqlkerdkqiedLkkk 49
                +++++ + l++ae++ ++l + l+ rd++i+ L++k
  MMETSP0890-20130614|4450_1 18 KLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREK 53
                566777889999*********************997 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.8   0.00049      0.14     408     453 ..       8      53 ..       1      55 [] 0.51

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00049
   PF13166.1 408 lkedideyekklkklekkinslekeleklekeikklekeikeleke 453
                  +e+i+++  kl++ +++++++e+++++l++ +++ ++ei++l+++
  MMETSP0890-20130614|4450_1   8 RDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREK 53 
                 3455555555555555555555555555555555555555555554 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.5    0.0036         1      28      51 ..       7      30 ..       1      43 [. 0.78
   2 ?    5.0   0.2     0.096        28      17      40 ..      31      54 ..      25      55 .] 0.70

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0036
   PF12711.2 28 eLkeEiklLreqveknpevtrfal 51
                +  eEi  Lr+++e+n + +++a 
  MMETSP0890-20130614|4450_1  7 SRDEEISNLRAKLEQNDQTLKAAE 30
                5579*************9999875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.096
   PF12711.2 17 saeslleeeneeLkeEiklLreqv 40
                s+ + l +  ++  eEi +Lre++
  MMETSP0890-20130614|4450_1 31 SKAQDLTQSLQSRDEEISTLREKL 54
                455556666678889999999986 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.7    0.0012      0.35      23      68 ..       5      54 ..       2      55 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0012
   PF07544.8 23 skdletatsslkhrl....qkaraaveelpdisrsveeqeaeIeeleeqi 68
                 ++ + ++s+l+ +l    q+++aa ++  d+ +s +++ +eI  l+e++
  MMETSP0890-20130614|4450_1  5 LQSRDEEISNLRAKLeqndQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54
                5667899********5555567888888888****************987 PP

>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   0.00067       0.2     265     310 ..       9      54 ..       2      55 .] 0.67

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00067
   PF10498.4 265 nnqleelvqeykeareelsevqekynqlsksvsektaelseiseel 310
                 ++++++l ++++++ ++l+ ++ k++ l++s +++ +e+s++ e+l
  MMETSP0890-20130614|4450_1   9 DEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54 
                 4566666667777777777777777777777777777777777766 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00065      0.19      70     119 ..       3      52 ..       1      55 [] 0.62

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00065
   PF04582.7  70 sslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqt 119
                 +sl+    e+++l++++++  +++++  s+ +dl++  +++d+ +s+l++
  MMETSP0890-20130614|4450_1   3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLRE 52 
                 55666666666666666666666666666666666666666666666665 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.6   0.00068       0.2     351     642 ..       9      52 ..       1      55 [] 0.50

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00068
   PF12128.3 351 ldqlpsirseleeveaeldaltekvqdvqekferrkqkikeqleeeleknkerleaireekerqkaaieealealesqlrkqleaqkeelneeekelesrleelklrldsatateeeleqleaadealekaqeelekaeaevealqseeeqlrkkrdealealqkaerrleelrealeeleeqllPqagsLlefLrkeapdWeesigkvistelLeRtDLdPqlvegsesdtlyGvsLdlqrldvpdyaasee..eLrerlqaleealqsaeakqkqaeeqlkqlnaeleeakr 642
                  +                                                                                                                                                                                                                                                          e  +Lr++l++ +++l++ae+k++ + ++l+++ +e+  +++
  MMETSP0890-20130614|4450_1   9 DE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EisNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLRE 52 
                 22..........................................................................................................................................................................................................................................................234555555555555555555555555555555555555444 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.6    0.0011      0.32      33      72 ..       7      46 ..       2      54 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0011
                CCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHC CS
   PF08702.5 33 dvdkkieklenlLeqlanktkeieelvksikeslkekqkq 72
                + d++i++l+ +Leq  ++ k +e++ +++++sl+++ ++
  MMETSP0890-20130614|4450_1  7 SRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEE 46
                5678999999999999999999999999999999887765 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.6     0.001       0.3      48      99 ..       5      42 ..       1      55 [] 0.50

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.001
                HHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17 48 lqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99
                lq++               e++++l+a+ +++ + lka+e + ++l++ l++
  MMETSP0890-20130614|4450_1  5 LQSRD--------------EEISNLRAKLEQNDQTLKAAESKAQDLTQSLQS 42
                44444..............555555555555555555555555555555443 PP

>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4    0.0013      0.39     126     172 ..       4      50 ..       1      54 [. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0013
   PF12999.2 126 feelleeankkvkkglkikeelllaakkkldelkkklkeledslkak 172
                  ++ ++e+  +++  l+  ++ l+aa+ k ++l++ l+  ++++ + 
  MMETSP0890-20130614|4450_1   4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTL 50 
                 56778899999***************************999998765 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.2    0.0013      0.39      86     134 ..       5      53 ..       1      55 [] 0.60

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0013
   PF10186.4  86 ieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksk 134
                 ++++ e+i+ l+++l+q  ++l+a   + + +++ l++  eei+ +++k
  MMETSP0890-20130614|4450_1   5 LQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREK 53 
                 5555666666666666666666666666666666666666666666665 PP

>> PF05064.8  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.0    0.0017       0.5      67     108 ..      12      53 ..       2      55 .] 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0017
   PF05064.8  67 vvkaeqeqnkldqeLdfvesqqdeLeslLdryEeeieellsk 108
                 + ++ ++ ++ dq+L+  es+ ++L+++L++ +eei++l +k
  MMETSP0890-20130614|4450_1  12 ISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREK 53 
                 44444455555899**********************998765 PP

>> PF05266.9  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.6    0.0019      0.56      89     140 ..       3      54 ..       2      55 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0019
   PF05266.9  89 kalqsrleklLslkkdqtkkleerkklekeiaekeieqqeleseiaelerki 140
                 ++lqsr e++ +l+ +  +  + +k++e ++++  ++ q++++ei+ l +k+
  MMETSP0890-20130614|4450_1   3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREKL 54 
                 6899999999999999999999999999999999999999999999999887 PP

>> PF02388.11  FemAB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.2    0.0023      0.67     250     294 ..       4      52 ..       1      55 [] 0.74

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
  PF02388.11 250 kleklekklakleekleknp....kkknkleelekqlaslekeldeake 294
                  l+  ++++++l++kle+n+     +++k ++l++ l+s ++e++ ++e
  MMETSP0890-20130614|4450_1   4 SLQSRDEEISNLRAKLEQNDqtlkAAESKAQDLTQSLQSRDEEISTLRE 52 
                 445555666666666666666666999*****************99988 PP

>> PF06102.7  Domain of unknown function (DUF947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.0    0.0029      0.84      60     101 ..       7      49 ..       5      54 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0029
   PF06102.7  60 yrekEikelkkklkkkk.adeeekeelkkklqslksrlktlkk 101
                  r++Ei++l++kl++++ + ++ +++ +   qsl+sr+++   
  MMETSP0890-20130614|4450_1   7 SRDEEISNLRAKLEQNDqTLKAAESKAQDLTQSLQSRDEEIST 49 
                 6999***********9964445556666666666666665544 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.2    0.0052       1.5      64     100 ..       4      40 ..       1      55 [] 0.82

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0052
   PF13600.1  64 dadaaseelaeleaelraledelarleaekealeari 100
                 + ++++ee+++l+a+l++ +++l+++e++++ l + +
  MMETSP0890-20130614|4450_1   4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSL 40 
                 4568899999999999999999999999998887765 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.2    0.0035         1      34      84 ..       3      53 ..       1      55 [] 0.90

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0035
   PF13094.1 34 rqlaaelksielLqeeirreeaelekdeekleeLeknakalererkeeskn 84
                ++l+   + i+ L++ +++  ++l+  e k + L +  +  ++e+ +++++
  MMETSP0890-20130614|4450_1  3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLREK 53
                788889999999***************************999999999987 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.6    0.0036         1      66     112 ..       6      52 ..       1      54 [. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0036
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  66 ealdseldeLkkeeerlleeleelekeedkldeeleelqeekeklee 112
                 +  d+e+ +L+ + e+  + l+  e++ ++l + l+  +ee   l e
  MMETSP0890-20130614|4450_1   6 QSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDEEISTLRE 52 
                 66799***********************************9888765 PP

>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.6     0.038        11      31      59 ..       4      32 ..       1      34 [. 0.72
   2 ?    6.7   0.6     0.026       7.5      21      45 ..      29      53 ..      23      55 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.038
   PF11488.3 31 elesldkeleelksqklklelelalletq 59
                +l+s+d+e+++l ++  +++  l+  e++
  MMETSP0890-20130614|4450_1  4 SLQSRDEEISNLRAKLEQNDQTLKAAESK 32
                67888888888888887777777766665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.026
   PF11488.3 21 tveklrsrvkelesldkeleelksq 45
                +++k ++   +l+s+d+e+++l  +
  MMETSP0890-20130614|4450_1 29 AESKAQDLTQSLQSRDEEISTLREK 53
                678999999999*****99999765 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.2    0.0055       1.6      50      99 ..       3      54 ..       1      55 [] 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0055
   PF03938.9 50 qelqakkkelqkeqknlqseraqlsaeaekak..eeelqakeqelqayaqql 99
                q lq++ +e+ ++ ++l+++ ++l+a++ ka+   + lq++ +e+ + +++l
  MMETSP0890-20130614|4450_1  3 QSLQSRDEEISNLRAKLEQNDQTLKAAESKAQdlTQSLQSRDEEISTLREKL 54
                7799999999999999999999777776666544889999999999888876 PP

>> PF11740.3  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.7    0.0072       2.1      79     119 ..       5      45 ..       1      46 [. 0.89

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0072
   PF11740.3  79 qeeaeerlaaaraeaeaeraaleaelaeaaarvealeeele 119
                  +  +e++  +ra++e++ ++l+a++ +a++++++l+++ e
  MMETSP0890-20130614|4450_1   5 LQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQSLQSRDE 45 
                 5677999*****************************99876 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.8     0.017       5.1     141     182 ..      10      53 ..       1      55 [] 0.48

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.017
   PF05529.7 141 esatkaakkl..keekekklkeeveklkkeleekekdlealkkq 182
                 e+ ++  +kl  + ++ k +++++++l + l+++++++++l+++
  MMETSP0890-20130614|4450_1  10 EEISNLRAKLeqNDQTLKAAESKAQDLTQSLQSRDEEISTLREK 53 
                 22222222222233444455556666667777777777777665 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.6     0.031         9      18      53 ..       4      39 ..       1      55 [] 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.031
  PF04977.10 18 alyqlkqeiaalqaelaklkaeneeLeaevkdLksd 53
                +l++ ++ei  l a+l++  ++ ++ e++ +dL+++
  MMETSP0890-20130614|4450_1  4 SLQSRDEEISNLRAKLEQNDQTLKAAESKAQDLTQS 39
                678999999999999999999999999999999773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1404  (0.102692); expected 273.4 (0.02)
Passed bias filter:                     1042  (0.0762142); expected 273.4 (0.02)
Passed Vit filter:                       219  (0.0160181); expected 13.7 (0.001)
Passed Fwd filter:                        47  (0.00343768); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              47  [number of targets reported over threshold]
# CPU time: 0.49u 0.49s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 175.73
//
Query:       MMETSP0890-20130614|4452_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-12   47.1   0.3    2.7e-10   39.5   0.0    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.9e-14   2.7e-10       8      40 ..       1      33 [.       1      34 [. 0.97
   2 !    6.4   0.0   0.00054       7.4       1      15 [.      36      50 ..      36      51 .] 0.92

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.9e-14
                HHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  8 vieaGavppLvqLLksgdeevqeeAawALsNLa 40
                ++eaGa+ppLv+LL+sg  + +e Aa+AL+NLa
  MMETSP0890-20130614|4452_1  1 IVEAGAIPPLVNLLTSGTVGAKEGAAGALQNLA 33
                79******************************9 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00054
                CHHHHHHHHHCHHHH CS
  PF00514.18  1 spenkqavieaGavp 15
                +++n  ++ eaGa+p
  MMETSP0890-20130614|4452_1 36 NDKNQVTIAEAGAIP 50
                78999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.42s 00:00:00.69 Elapsed: 00:00:00.67
# Mc/sec: 182.41
//
Query:       MMETSP0890-20130614|4453_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      576  (0.0421299); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.44s 00:00:01.01 Elapsed: 00:00:00.86
# Mc/sec: 649.25
//
Query:       MMETSP0890-20130614|4458_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24   10.5   7.6       0.28   10.3   5.3    1.1  1  PF11796.3 Protein of unknown function N-terminus (DUF3323)
        1.4    8.7   8.2       0.48   10.1   2.7    2.0  2  PF10454.4 Protein of unknown function (DUF2458)
        7.3    6.3  13.3         19    4.9   9.2    1.7  1  PF05524.8 PEP-utilising enzyme, N-terminal


Domain annotation for each model (and alignments):
>> PF11796.3  Protein of unknown function N-terminus (DUF3323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.3   6.1e-05      0.28      33     124 ..      18     116 ..       8     117 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.1e-05
   PF11796.3  33 svridlsdldaalrst....rfaglslkevLeallgpiltrkaeraeae.aawreaffe..eeklaidrpelraWlkrleagetvrrlakqdeeaakal 124
                 ++  ++++l+aal ++      a+l l+++L a  +++l+r aer+    +a  ea++e  +++l  +++  +++  +l +++ ++ + +++ e+ +++
  MMETSP0890-20130614|4458_1  18 KIAQKEQELAAALTASanceSNADLNLQAALTAQEDELLKRLAERETELmKAHTEAIAEkeRQSLLDREALVSKYETELNSKNSLKAALQKKDEEHAKI 116
                 5666788999998777788778999******************9986651566666766988889999999*************999988888877665 PP

>> PF10454.4  Protein of unknown function (DUF2458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.7     0.068   3.1e+02      61      77 ..      23      39 ..       2      76 .. 0.38
   2 ?   10.1   2.7   0.00011      0.48      37      73 ..      75     111 ..      48     115 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.068
   PF10454.4 61 kkkldavLksvgaqvdd 77
                 ++l a L +  ++ ++
  MMETSP0890-20130614|4458_1 23 EQELAAALTASANCESN 39
                22333333333332222 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00011
   PF10454.4  37 hkhekqwekerealikkqearkekkkkldavLksvga 73 
                  ++e+q+  +real+ k+e   ++k+ l+a L+++ +
  MMETSP0890-20130614|4458_1  75 AEKERQSLLDREALVSKYETELNSKNSLKAALQKKDE 111
                 36899***************************99876 PP

>> PF05524.8  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.2    0.0042        19      39     109 ..      43     115 ..       4     117 .] 0.81

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0042
   PF05524.8  39 rleaAlekareel.eelaeqlseelgaeea.aileahll.lleDpelleeveerIreglsAeaAvkevieelae 109
                 +l+aAl + ++el ++lae+ +e + ++++ ai e  ++ ll+ ++l+++ e+++++++s +aA+++  ee+a+
  MMETSP0890-20130614|4458_1  43 NLQAALTAQEDELlKRLAERETELM-KAHTeAIAEKERQsLLDREALVSKYETELNSKNSLKAALQKKDEEHAK 115
                 69***********99****955555.555559**998753788889********************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1432  (0.10474); expected 273.4 (0.02)
Passed bias filter:                      610  (0.0446167); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 452.22
//
Query:       MMETSP0890-20130614|4460_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-45  154.7   0.0    2.3e-45  154.3   0.0    1.0  1  PF01209.13 ubiE/COQ5 methyltransferase family
    1.2e-14   54.1   0.0    1.7e-14   53.6   0.0    1.3  1  PF13489.1  Methyltransferase domain
    9.2e-13   48.3   0.0    1.5e-12   47.7   0.0    1.3  1  PF08241.7  Methyltransferase domain
    1.1e-11   44.4   0.0    1.3e-11   44.2   0.0    1.1  1  PF13847.1  Methyltransferase domain
    1.7e-10   41.3   0.1    2.9e-10   40.6   0.0    1.3  1  PF12847.2  Methyltransferase domain
    1.6e-07   31.5   0.0    2.6e-07   30.8   0.0    1.4  1  PF08242.7  Methyltransferase domain
      2e-07   31.1   0.0    3.8e-07   30.3   0.0    1.5  1  PF13649.1  Methyltransferase domain
    1.1e-05   25.3   0.0      2e-05   24.4   0.0    1.5  1  PF13659.1  Methyltransferase domain
     0.0015   18.0   0.0     0.0021   17.4   0.0    1.1  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
     0.0026   16.7   0.0     0.0035   16.3   0.0    1.2  1  PF01596.12 O-methyltransferase
     0.0059   15.5   0.0     0.0094   14.9   0.0    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase
     0.0071   15.6   0.1       0.01   15.1   0.0    1.2  1  PF05175.9  Methyltransferase small domain
  ------ inclusion threshold ------
      0.015   14.2   0.5      0.021   13.8   0.4    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
      0.017   14.6   0.0      0.027   13.9   0.0    1.3  1  PF01170.13 Putative RNA methylase family UPF0020
      0.052   12.8   0.0      0.084   12.1   0.0    1.3  1  PF07021.7  Methionine biosynthesis protein MetW
       0.15   11.0   0.1        0.2   10.7   0.0    1.2  1  PF06255.8  Protein of unknown function (DUF1020)


Domain annotation for each model (and alignments):
>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   2.7e-48   2.3e-45      11     230 ..      40     260 ..      29     262 .. 0.93

  Alignments for each domain:
  == domain 1    score: 154.3 bits;  conditional E-value: 2.7e-48
  PF01209.13  11 evfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfed.dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGklla.kdldsyryLvesirafPdqetlkeliedaGfksveyesltgGvvaihi 230
                 ++f+++a +yD  n v+slg+ + W++ + +    k   +vlD+a+Gt+D+a+  +++    gkv ++D ++nm+++g++kl +e+++ ++ +  ++a +L+    +sfD + ++fG+rn++++++aL e++rv kp  +l +lef ++e   l      +   ++P++G ll+  + ++yr+L+ si afP   +++++i++aGf+  e + l++G va+++
  MMETSP0890-20130614|4460_1  40 SMFDRIAGRYDRTNRVMSLGMDKGWRRVLVRALDLKANDNVLDLATGTADVAI--LEAHAGAGKVLGIDPSANMISIGREKLVHESVQdRVSLELGDATQLDTLTnKSFDKISIAFGIRNIPNIPQALIEMRRVAKPKAILAILEFCEPESGPLAPIARFFIRFIVPRIGALLSgAHWNEYRHLQASIAAFPSPSKFAHIINQAGFHVYEIRLLAFGSVALYL 260
                 68******************************99****************986..5556668********************99999889***********975549***********************************************9999999999********973568***************************************999876 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0     2e-17   1.7e-14       9     161 ..      64     247 ..      43     248 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 2e-17
   PF13489.1   9 ladllerllarlkpggrvLDiGcGtGillellaengf.dvtgvDpspaaigk...........akqaqksqfdeed.........aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas...................lasdeafakw.dylvprgthisffsaeslkelleeaGfeive 161
                 +++ l r+l+ lk++ +vLD+++Gt +++ l a +g+ +v g+Dps ++i++           +           +         ++  +++fd i+  + + ++p+ +++l ++++  kp  +l + +++ +                     +  ++a+w  y   +     f s++ ++++  +aGf+++e
  MMETSP0890-20130614|4460_1  64 WRRVLVRALD-LKANDNVLDLATGTADVAILEAHAGAgKVLGIDPSANMISIgreklvhesvqD---------RVSlelgdatqlDTLTNKSFDKISIAFGIRNIPNIPQALIEMRRVAKPKAILAILEFCEPesgplapiarffirfivprIGALLSGAHWnEYRHLQASIAAFPSPSKFAHIINQAGFHVYE 247
                 7788889998.9***************9998899******************986554443331.........221233333333555788**************************************9988999***********99887556666666667877775666999***************986 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.7e-15   1.5e-12       1      95 []      81     180 ..      81     180 .. 0.95

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.7e-15
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeel.pfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 Ld+ +Gt  ++ + a++ a++v+g+D+s++m++  +e+l +e+++    l  +da++l  + ++sfD + + + +  +++  +al e++Rv kp  +l+i
  MMETSP0890-20130614|4460_1  81 LDLATGTADVAILEAHAGAGKVLGIDPSANMISIGREKLVHESVQdrvsLELGDATQLdTLTNKSFDKISIAFGIRNIPNIPQALIEMRRVAKPKAILAI 180
                 79999999999998999*****************************************777799******************************999875 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.5e-14   1.3e-11       2     112 ..      75     184 ..      74     242 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 1.5e-14
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                 k + +vlDl++Gt +   +l   +g  +kv GiD s+++i+  +e++ +  ++ +v+ + gd+++l++l ++sfD +     + ++++ +++l e++rv kp+ +l + +++
  MMETSP0890-20130614|4460_1  75 KANDNVLDLATGTAD-VAILEAHAG-AGKVLGIDPSANMISIGREKLVHESVQdRVSLELGDATQLDTLTNKSFDKISIAFGIRNIPNIPQALIEMRRVAKPKAILAILEFC 184
                 6799*********55.555553544.699****************999999999*************86559****9999999************************99887 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   3.4e-13   2.9e-10       2     109 ..      77     180 ..      76     184 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 3.4e-13
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller..fDavllkgltldallaldeprrvlealpkllkpggrlvi 109
                 ++++lDl++Gt ++++  a  ++ +kv+g+Dps++++++ re++  +++++r++l  gda  +l+ l++  fD + +      + + +    ++l ++++ +kp+ +l i
  MMETSP0890-20130614|4460_1  77 NDNVLDLATGTADVAILEAH-AGAGKVLGIDPSANMISIGREKLVHESVQDRVSLELGDA-TQLDTLTNksFDKISIAF-GIRNIPNI---PQALIEMRRVAKPKAILAI 180
                 789***********977777.599********************8999************.6666666668**999977.33333333...3445558888888888765 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   3.1e-10   2.6e-07       1      99 []      81     178 ..      81     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 3.1e-10
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                 L++ +Gt++++   + +    +++g+D+s+++i   +ekl +++ ++   ++l +   ld+  ++sfD + +++ + ++++i ++l ++r++ kp ++l
  MMETSP0890-20130614|4460_1  81 LDLATGTADVAILEAHA-GAGKVLGIDPSANMISIGREKLVHESVQDRVSLELGDATQLDTLTNKSFDKISIAFGIRNIPNIPQALIEMRRVAKPKAIL 178
                 56666666555444433.8999**********************98888888888887777777*******************************8875 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   4.4e-10   3.8e-07       1     100 [.      80     175 ..      80     176 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4.4e-10
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpf.eegefdlvvcaglslehlspkqlealleeiarvlkpg 100
                 +ldl+ G+++v+   ++a     + +v+g+D s++++  ++e+l  +++  +v+   +da++l++  +++fd + +a   +   + + ++++l e+ rv+kp+
  MMETSP0890-20130614|4460_1  80 VLDLATGTADVAILEAHAG----AGKVLGIDPSANMISIGREKLVHESVqdRVSLELGDATQLDTlTNKSFDKISIA---FGIRNIPNIPQALIEMRRVAKPK 175
                 79*******9998888774....489******************99988999***********984666*******6...66788899************986 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.4e-08     2e-05       2      74 ..      78     149 ..      77     192 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.4e-08
   PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlv 74 
                 d vld+++G+  +++  ++++a ++lg++ +++ + + +++l + ++++rv +  gd+++l+  l+ +sfd +
  MMETSP0890-20130614|4460_1  78 DNVLDLATGTADVAILEAHAGAGKVLGIDPSANMISIGREKLVHESVQDRVSLELGDATQLD-TLTNKSFDKI 149
                 68***********************************************************9.7888998865 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-06    0.0021      67     161 ..      70     167 ..      64     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.5e-06
                 HHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--.SEEEE------.--GGG--BSEEEESSB-...SS--HHHHH CS
  PF01135.14  67 ellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrk.GyeekaPYdaihvgaaa...peiPealid 161
                   l+lk+ ++vL++ +G+    a+l    g  g+v++i+ ++++++  +++l ++ ++ +v++  gD ++     +  +d+i ++ +    p+iP+ali+
  MMETSP0890-20130614|4460_1  70 RALDLKANDNVLDLATGTAD-VAILEAHAG-AGKVLGIDPSANMISIGREKLVHESVQdRVSLELGDATQlDTLTNKSFDKISIAFGIrniPNIPQALIE 167
                 5689*************975.556655555.688************9999887766655********98735667889***9998875222667788875 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.1e-06    0.0035      49     123 ..      80     147 ..      47     173 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.1e-06
  PF01596.12  49 vleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagvedkielilgdalkvLeelvedkkqgefD 123
                 vl++   tG + +a+  a    Gk++ id + ++ +ig++ + + +v+d+++l lgda++ L++l++++    fD
  MMETSP0890-20130614|4460_1  80 VLDLA--TGTADVAILEAHAGAGKVLGIDPSANMISIGREKLVHESVQDRVSLELGDATQ-LDTLTNKS----FD 147
                 55544..455555555666689***********************************975.89999876....44 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05    0.0094      52     132 ..      66     150 ..      39     158 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
                 HHHHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT---....--SEEE CS
  PF02353.15  52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevklldyedlde....kvdrvv 132
                 +++++ l+lk+ +++Ld+ +G   +++  ++    kv+g+  S++     ++++ ++ ++++v+++l d  +ld      +d+++
  MMETSP0890-20130614|4460_1  66 RVLVRALDLKANDNVLDLATGTADVAILEAHAGAGKVLGIDPSANMISIGREKLVHESVQDRVSLELGDATQLDTltnkSFDKIS 150
                 667899********************999999899*************************************9987777899985 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05      0.01      17     102 ..      61     149 ..      52     165 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-05
                 ---.-HHHHHHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-ST..TTT--.--BS-E CS
   PF05175.9  17 DaG.selLletlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdl..leeveekkfdli 102
                 D+G  ++L+++l+ k +++vlDl++G+  +++  a+++   +v  +D +a+ +++ +++l ++ +++ v++   d+  l+++++k+fd i
  MMETSP0890-20130614|4460_1  61 DKGwRRVLVRALDLKANDNVLDLATGTADVAILEAHAGAG-KVLGIDPSANMISIGREKLVHESVQDrVSLELGDAtqLDTLTNKSFDKI 149
                 6663379***********************9988887777.9************************997777777622567889999988 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   2.5e-05     0.021     159     217 ..      74     132 ..      66     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-05
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleval 217
                 +k++++vlD+ tG++  ai  a  ga kv+++D     +++ +e +   +v++++++ l
  MMETSP0890-20130614|4460_1  74 LKANDNVLDLATGTADVAILEAHAGAGKVLGIDPSANMISIGREKLVHESVQDRVSLEL 132
                 57889****************************************99999999987754 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-05     0.027      41     110 ..      89     149 ..      52     154 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.1e-05
  PF01170.13  41 tilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaakle.llegevdvi 110
                  ++I  a  g            k++g+D  +++++  +e++ +  v+d+++++ +da++l  l+++++d i
  MMETSP0890-20130614|4460_1  89 DVAILEAHAG----------AGKVLGIDPSANMISIGREKLVHESVQDRVSLELGDATQLDtLTNKSFDKI 149
                 4444333333..........34468************************************8888899976 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.9e-05     0.084      13     111 ..      76     182 ..      67     186 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.9e-05
   PF07021.7  13 pgsrvldlGcGdGellellkeekqvdgrGleldeeg........vaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigr.raivsfPn 111
                 ++ +vldl +G  ++  l ++    +  G++ +++         v e+v+  +s+  gd+ ++l++  +ksfd + ++  ++++ n  + l e+ r+++ +ai++  +
  MMETSP0890-20130614|4460_1  76 ANDNVLDLATGTADVAILEAHAGAGKVLGIDPSANMisigreklVHESVQDRVSLELGDA-TQLDTLTNKSFDKISIAFGIRNIPNIPQALIEMRRVAKpKAILAILE 182
                 566777777776665444444444444555555443111111116778888888888887.57**********************************98578877655 PP

>> PF06255.8  Protein of unknown function (DUF1020)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023       0.2     151     230 ..      39     119 ..      29     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00023
   PF06255.8 151 rsisqrlldeyanagsglldradeagkkifesdpeldrsgnameainGiadgav.npflaagealGiGdivdgaveavdka 230
                  s+ +r++ +y+ +   ++ + d++ ++++    +l    n ++   G+ad+a+      ag++lGi    + ++ + +k 
  MMETSP0890-20130614|4460_1  39 GSMFDRIAGRYDRTNRVMSLGMDKGWRRVLVRALDLKANDNVLDLATGTADVAIlEAHAGAGKVLGIDPSANMISIGREKL 119
                 57889**********************************************9862667778999**987777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.99
# Mc/sec: 665.65
//
Query:       MMETSP0890-20130614|4469_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-07   29.1   0.0    2.6e-06   27.4   0.0    1.8  2  PF00300.17 Histidine phosphatase superfamily (branch 1)
     0.0024   17.5   0.0     0.0083   15.8   0.0    1.9  1  PF13405.1  EF-hand domain
     0.0035   17.3   0.0     0.0091   16.0   0.0    1.7  1  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.028   13.8   0.1      0.044   13.1   0.1    1.2  1  PF08376.5  Nitrate and nitrite sensing
       0.11   11.7   0.0       0.34   10.2   0.0    1.8  1  PF00036.27 EF hand


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   9.4e-10   2.6e-06      81     156 ..       2      95 ..       1      97 [. 0.86
   2 ?   -1.0   0.0      0.52   1.4e+03      26      56 ..     180     208 ..     153     247 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 9.4e-10
                 SHHHH----..TTCHHHHHHHHHCHHHHHHHHCCTSTTT..........SS.CHHHHHHHHHHHHHHHHH.....HCTTTSEE.EEEE-TTHHH CS
  PF00300.17  81 rerdfgewe..glpkaevkeelpeeyekwkrdkkefrpp..........egesladvyeRvapfleelie.....akdkgenv.livsHggvlr 156
                 +er++g+++  +++ + + ++++e+     r++ + +pp            eslad+++Rv +++ +l++       ++g+ + l+v+H ++lr
  MMETSP0890-20130614|4469_1   2 NERHYGAFQgiKKNDQGLISRYGEDHIINIRRSLHTAPPplepvpkfgpATESLADCRARVLEAFHDLVKpalfsTPQQGGCIvLVVAHSNTLR 95 
                 89****99855667778999999777777777777777779999**999889***********************778888877*********9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.52
                 B-----HHHHHHHTHHHHTTHCESEEEEESS CS
  PF00300.17  26 LtekGreqarelgkkLkradlqidavytSpl 56 
                 L   G   a e+++ Lk  +++ d +     
  MMETSP0890-20130614|4469_1 180 LDRSGCLSAAEIAQGLK--QVESDTALFAMA 208
                 77888888888888888..555554444444 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.1e-06    0.0083       3      28 ..     172     197 ..     171     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.1e-06
                 H---GCC-------B---HHHHHHH. CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLrk 28 
                 r++F+  D d++G+++a+E+ + L++
  MMETSP0890-20130614|4469_1 172 RALFESWDLDRSGCLSAAEIAQGLKQ 197
                 789********************996 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.3e-06    0.0091       5      60 ..     174     226 ..     160     230 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.3e-06
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfe 60 
                 +F++ D d++g l+ +e+ + lk+  s   d  +  ++++i++++ ++  G+++ +
  MMETSP0890-20130614|4469_1 174 LFESWDLDRSGCLSAAEIAQGLKQVES---DTALFAMARRIVRRVEHDFEGTVTVD 226
                 6**********************9997...889999************99999987 PP

>> PF08376.5  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.6e-05     0.044     192     238 ..     199     245 ..     186     249 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
   PF08376.5 192 pavkeverlrqqalaaaaggg.lsgvdaeeWfeastaridllkevedr 238
                 ++ +++ ++ ++++++ +  +  ++v+ ++W+++st++i +++++e +
  MMETSP0890-20130614|4469_1 199 ESDTALFAMARRIVRRVE-HDfEGTVTVDQWDKLSTQVIAEFRHLESQ 245
                 555667889999999888.6669**********************976 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.34       3      27 ..     172     196 ..     171     198 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
                 HHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                 + +F+  D D++G +s  E  + lk
  MMETSP0890-20130614|4469_1 172 RALFESWDLDRSGCLSAAEIAQGLK 196
                 5789****************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 938.85
//
Query:       MMETSP0890-20130614|4477_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-23   80.2   9.8    9.7e-23   80.2   6.8    3.3  3  PF09745.4 Coiled-coil domain-containing protein 55 (DUF2040)


Domain annotation for each model (and alignments):
>> PF09745.4  Coiled-coil domain-containing protein 55 (DUF2040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.4    0.0026        36      15      47 ..      17      49 ..      11      55 .. 0.82
   2 !   80.2   6.8   7.1e-27   9.7e-23       4     123 ..      55     164 ..      51     169 .. 0.89
   3 ?   -2.6   2.3      0.28   3.9e+03      64      96 ..     239     270 ..     198     287 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0026
   PF09745.4 15 psiydYDevydsikkakekakkakeeekkekkk 47
                psi++ D+  ++ k++++ ++  k++ ++e+++
  MMETSP0890-20130614|4477_1 17 PSIFQVDASTEQSKDESKPKDIMKQTMESERRR 49
                899999999999998888888888888887765 PP

  == domain 2    score: 80.2 bits;  conditional E-value: 7.1e-27
   PF09745.4   4 ekeakkaleeDpsiydYDevydsikkakekakkakeeekkekkkpkYieklleaaekRkrereiaeerklqkerekegdefadkekFVtsAYkkkleerkkleeeekkreeleeeedktk 123
                  ++  +al++D+s ++YD+vyds+ ++++  +++k      +k  +Yi kl +aa+ R+ e+++++er+l ke++++    a  e++Vt+AYkk+l+e +k+ +e++ r e+ e+ ++ +
  MMETSP0890-20130614|4477_1  55 TQRSLEALAQDASCFQYDDVYDSMTATRRVGATHK------EKSARYIPKLQQAAKIREIEFDRVYERQLLKEQQAD----APSERYVTAAYKKQLQESRKWDAEDAVRTEAVEKATTAE 164
                 567779*******************7777666665......4789*******************************9....789***********************9999999887665 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.28
   PF09745.4  64 ereiaeerklqkerekegdefadkekFVtsAYk 96 
                 e + +ee k q e+  e  + +d  + + sA +
  MMETSP0890-20130614|4477_1 239 ELLQIEEHKQQPETVVET-QQQDSSSHIVSAAR 270
                 444444555555444443.33333333434433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       986  (0.0721182); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 1128.61
//
Query:       MMETSP0890-20130614|4485_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.5   0.0       0.13   11.3   0.0    1.1  1  PF00326.16 Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.2e-06      0.13     140     175 ..       6      41 ..       2      49 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.2e-06
                 -------EEEEEETT-SSS-THHHHHHHHHHH..-- CS
  PF00326.16 140 nvkaypplllihGeeDdrvppaealklvaaLqkagk 175
                 n k ++p+++i G  Dd vp+  ++ ++++ q++ +
  MMETSP0890-20130614|4485_1   6 NAKTEQPVMVIAGAIDDAVPVGFSIDMIQEHQSKAN 41 
                 556899******************999999886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 196.96
//
Query:       MMETSP0890-20130614|4500_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 292.89
//
Query:       MMETSP0890-20130614|4497_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-13   48.6   0.1    1.3e-12   47.9   0.0    1.3  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   9.5e-17   1.3e-12       2      78 .]       7      79 ..       6      79 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 9.5e-17
                --EEEEETTEEEEEEE-------S-EEEEE----EEEEE---....EEE---BSS-EEEEEEEEEE---EEEEEEEE CS
  PF04969.11  2 rydWyQtleeVtitipvkgvikkedvkveikkkslkvsikgpgekeyllegeLfgeIdpeesswkiedtkieitLkK 78
                  +W+Q++++V++ti+++++    + k++++ + l++     +e++y++++e+f+++ pees+wk+ ++++ ++L K
  MMETSP0890-20130614|4497_1  7 PLKWAQRKDSVFLTIDLPDI---VKEKIDLTASGLSFFGES-EEQKYEFSVEFFAKVIPEESVWKVHGRNVLMHLVK 79
                579*****************...444677888998888855.5599*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 612.78
//
Query:       MMETSP0890-20130614|4504_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   47.3   0.0    2.8e-12   46.7   0.0    1.3  1  PF00621.15 RhoGEF domain
    1.1e-06   28.3   0.3    3.6e-06   26.6   0.1    2.0  2  PF13180.1  PDZ domain
    5.2e-05   23.2   0.0     0.0001   22.2   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0     6e-16   2.8e-12      87     179 ..       5     106 ..       1     107 [. 0.86

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 6e-16
                 HHHHHCTHHHHHHHHHHHHHH-HHHHHHHH..HHGGG..TT--HHHHCTHHHHHHHHHHHHHHHHHHT--SHH........HHHHHHHHHHHHHHHHHHHHH CS
  PF00621.15  87 YseYisnydkalkllkelskknskfkkflkeceespec.skldLeslLikPvqRlprYplLLkellkqtpedh........pdyedlekaleaikevasqiN 179
                  + Y++ y+++ + + e++kk+ ++++fl+ ce +p + + ++L sl i+PvqR prY+lLL+el k  ++ +         d ++le+al + ++ a+ i+
  MMETSP0890-20130614|4504_1   5 LGRYVAAYNAVWSEFCEYRKKSTAIEAFLRCCELQPGNtRHQTLASLAIMPVQRGPRYVLLLDELQKRAQKASftyerqggDDEQALEDALACARRAAKAID 106
                 578*******************************665527778************************998766566665555889*******9999999887 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1     8e-10   3.6e-06       2      72 ..     430     501 ..     429     506 .. 0.83
   2 ?   -2.4   0.0      0.88     4e+03      25      42 ..     576     593 ..     562     610 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 8e-10
   PF13180.1   2 diGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslll.kkkpG.dtvkltvlRd 72 
                 ++G++++++ + ++++v++V+  s a++agl+ GD+i +v + +v++++d++ ll   +  G + + l v+Rd
  MMETSP0890-20130614|4504_1 430 GLGIELRNEGS-DQIVVTNVAVPSAAHDAGLRRGDTISAVSNMRVQTTDDVVALLHtLAATGhTDLALLVKRD 501
                 699***99996.9***************************************999854444413455666665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.88
   PF13180.1  25 sPaakaglkpGDiilkvd 42 
                 s a   g+ p+D++ +v+
  MMETSP0890-20130614|4504_1 576 SQALAMGFNPDDVVRAVE 593
                 455566799999999886 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.3e-08    0.0001       7      67 ..     425     481 ..     419     498 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.3e-08
                 T.TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHH CS
  PF00595.19   7 e.krgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavq 67 
                 + +++glG++l  + ++    i+v++v   +aa+ +gl+ GD I +v +  v   + d++v+
  MMETSP0890-20130614|4504_1 425 RlGPEGLGIELRNEGSD---QIVVTNVAVPSAAHDAGLRRGDTISAVSNMRVQ--TTDDVVA 481
                 4489********98886...8**************************998887..4455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.94
# Mc/sec: 1817.66
//
Query:       MMETSP0890-20130614|4510_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.66
# Mc/sec: 835.09
//
Query:       MMETSP0890-20130614|4520_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   12.3   0.6        1.8    8.3   0.0    2.2  2  PF08513.6 LisH
       0.12   11.3   0.1       0.13   11.1   0.1    1.0  1  PF07766.8 LETM1-like protein


Domain annotation for each model (and alignments):
>> PF08513.6  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.018   1.2e+02      17      27 .]       6      16 ..       6      16 .. 0.90
   2 ?    8.3   0.0   0.00026       1.8      13      26 ..      33      46 ..      32      46 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.018
                HHHHHH---TT CS
   PF08513.6 17 ketAeaFakEs 27
                ke+ ++++kE+
  MMETSP0890-20130614|4520_1  6 KEAKKTLKKET 16
                6899******8 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00026
                H---HHHHHH---T CS
   PF08513.6 13 ksGyketAeaFakE 26
                 +G+ ++Ae+++ E
  MMETSP0890-20130614|4520_1 33 INGFGKSAETLRAE 46
                59**********98 PP

>> PF07766.8  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.9e-05      0.13     207     253 ..       7      52 ..       2      54 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.9e-05
   PF07766.8 207 kdDkaikrEgvesLsveeLqsAcraRGlralglseealreqLqeWld 253
                 +  k++k+E +e+ ++ +L+s ++ R ++ +g s+e+lr +L +W +
  MMETSP0890-20130614|4520_1   7 EAKKTLKKETIEKAKPVKLKSLAKGR-INGFGKSAETLRAELMKWCE 52 
                 56689****************99999.******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 252.71
//
Query:       MMETSP0890-20130614|4515_1  [L=1100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-26   92.2   8.3    4.9e-08   32.8   0.1    5.6  5  PF13499.1  EF-hand domain pair
    1.1e-21   74.3   7.4    0.00036   19.5   0.0    9.6  9  PF00036.27 EF hand
    1.2e-17   61.9   9.0      0.046   13.5   0.0    9.3  9  PF13405.1  EF-hand domain
    4.4e-17   61.3   5.5    0.00018   20.9   0.0    6.5  6  PF13833.1  EF-hand domain pair
    1.2e-11   43.2   0.4       0.34   10.2   0.1    7.6  7  PF13202.1  EF hand
     0.0027   17.2   0.1        8.6    6.0   0.0    3.7  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.073   12.3   0.7        7.1    5.9   0.0    3.2  4  PF11913.3  Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0012       2.4       5      24 ..     258     277 ..     230     284 .. 0.73
   2 !   32.8   0.1   2.5e-11   4.9e-08       2      65 ..     488     548 ..     476     549 .. 0.92
   3 !   19.9   0.0   2.8e-07   0.00055       5      66 .]     564     630 ..     556     630 .. 0.85
   4 !   18.5   0.1   7.7e-07    0.0015       4      64 ..     856     910 ..     835     912 .. 0.89
   5 !   12.9   0.3   4.2e-05     0.082       3      66 .]     925     993 ..     923     993 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
   PF13499.1   5 aFkllDkdgdgyldkeeLlr 24 
                 +F ++D+dg g++d++e+l 
  MMETSP0890-20130614|4515_1 258 LFAACDRDGEGTVDYTEWLG 277
                 48888888888888888765 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 2.5e-11
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 l + F+  D +++++l++  +++++k +g     e ++ +++ if+ +Dk+ +G + +eEfl a
  MMETSP0890-20130614|4515_1 488 LGRKFRNVDENNTKRLSMGKFRQVTKEFGM---LELTDAEIRLIFAAMDKDSSGSIAYEEFLRA 548
                 6778*************************6...68888899999*****************986 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 2.8e-07
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgsels.......deevrevldyifkelDkn..gdGvlsfeEflqai 66 
                 aF+ lD+dg+g +d++ +   +++++++         d    e+ +++++++D     dG+++ +Ef+q++
  MMETSP0890-20130614|4515_1 564 AFDILDSDGSGVIDPAVIATKFDASQHPAVqngervaD----EIYREFLDQMDVGgeIDGRVTKQEFVQYY 630
                 7*************************9999*9854444....455555*******888***********97 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 7.7e-07
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64 
                 + F + D+  +++l++ e+ ++l++++    +++++ +    f  +D   +G++++eEfl+
  MMETSP0890-20130614|4515_1 856 RKFHTADTEASKKLSRSEFYQVLQQSSLRVNPSDMDIL----FSAFDR--SGLIDYEEFLY 910
                 45*************************99999999999....*****6..79*******96 PP

  == domain 5    score: 12.9 bits;  conditional E-value: 4.2e-05
   PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels.......deevrevldyifkelDkngdGvlsfeEflqai 66 
                  eaF  lD+++++ +d ++L++  + + ++         +e+ +e+  + f+++ +   G+++ +Ef +++
  MMETSP0890-20130614|4515_1 925 DEAFCFLDTNCSKLIDIDDLVNKYDSSFHPSVlggtktsNEMFQEF-LDTFECVGEV-EGKVTKDEFIHYY 993
                 5799************************999999988865555555.5559999998.9********9987 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.7e-05     0.053       1      26 [.     254     279 ..     254     281 .. 0.88
   2 ?   -0.6   0.0      0.49   9.6e+02       6      26 ..     492     512 ..     490     515 .. 0.83
   3 !   19.5   0.0   1.9e-07   0.00036       1      27 [.     524     550 ..     524     552 .. 0.93
   4 !   10.6   0.0   0.00012      0.24       2      19 ..     561     578 ..     560     579 .. 0.89
   5 ?    3.7   0.0      0.02        40      14      27 ..     618     631 ..     618     633 .. 0.88
   6 ?    3.3   0.0     0.027        53       6      27 ..     858     879 ..     854     881 .. 0.90
   7 !    6.9   0.1    0.0019       3.7      12      23 ..     898     909 ..     891     912 .. 0.92
   8 !    7.7   0.2    0.0011       2.1       2      23 ..     924     945 ..     923     947 .. 0.93
   9 ?    2.5   0.0     0.051        99      15      28 ..     982     995 ..     981     996 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkeal 26 
                 el  +F+  D+Dg G++++ E++ ++
  MMETSP0890-20130614|4515_1 254 ELVALFAACDRDGEGTVDYTEWLGLI 279
                 56789****************99776 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.49
                 HHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   6 FkefDkDgdGkIsfeEfkeal 26 
                 F+ +D +++ ++s   f+++ 
  MMETSP0890-20130614|4515_1 492 FRNVDENNTKRLSMGKFRQVT 512
                 999*****9999988887765 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                 e++ +F+ +DkD +G I +eEf++a++
  MMETSP0890-20130614|4515_1 524 EIRLIFAAMDKDSSGSIAYEEFLRAVR 550
                 7899*******************9987 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00012
                 HHHHHHHHCTTTSSEBEH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsf 19 
                 ++ aF+++D Dg+G I+ 
  MMETSP0890-20130614|4515_1 561 VNSAFDILDSDGSGVIDP 578
                 5679************95 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.02
                 SSEBEHHHHHHHHH CS
  PF00036.27  14 dGkIsfeEfkealk 27 
                 dG+++++Ef+++++
  MMETSP0890-20130614|4515_1 618 DGRVTKQEFVQYYE 631
                 9*********9875 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.027
                 HHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   6 FkefDkDgdGkIsfeEfkealk 27 
                 F  +D+  + k+s +Ef ++l+
  MMETSP0890-20130614|4515_1 858 FHTADTEASKKLSRSEFYQVLQ 879
                 8889*************99986 PP

  == domain 7    score: 6.9 bits;  conditional E-value: 0.0019
                 TTSSEBEHHHHH CS
  PF00036.27  12 DgdGkIsfeEfk 23 
                 D++G I++eEf+
  MMETSP0890-20130614|4515_1 898 DRSGLIDYEEFL 909
                 89*********6 PP

  == domain 8    score: 7.7 bits;  conditional E-value: 0.0011
                 HHHHHHHHCTTTSSEBEHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfk 23 
                 ++eaF  +D++ +  I+ ++++
  MMETSP0890-20130614|4515_1 924 VDEAFCFLDTNCSKLIDIDDLV 945
                 79******************97 PP

  == domain 9    score: 2.5 bits;  conditional E-value: 0.051
                 SEBEHHHHHHHHHH CS
  PF00036.27  15 GkIsfeEfkealkk 28 
                 Gk++++Ef++++++
  MMETSP0890-20130614|4515_1 982 GKVTKDEFIHYYEN 995
                 9*******998765 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00066       1.3       1      27 [.     254     280 ..     254     285 .. 0.87
   2 ?    1.7   0.0      0.15   2.8e+02       4      25 ..     490     511 ..     487     516 .. 0.85
   3 !   13.5   0.0   2.3e-05     0.046       1      27 [.     524     550 ..     524     554 .. 0.92
   4 !   11.3   0.0   0.00012      0.23       3      19 ..     562     578 ..     560     581 .. 0.91
   5 ?    0.7   0.0      0.29   5.7e+02      14      26 ..     618     630 ..     604     634 .. 0.83
   6 !    8.2   0.0    0.0011       2.2       3      28 ..     855     880 ..     853     886 .. 0.90
   7 !    6.0   0.1    0.0059        11       5      23 ..     893     909 ..     889     915 .. 0.84
   8 ?    5.2   0.2     0.011        21       3      23 ..     925     945 ..     923     949 .. 0.92
   9 ?   -0.5   0.0      0.74   1.4e+03      15      26 ..     982     993 ..     981     997 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00066
                 HHH---GCC-------B---HHHHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                 el ++F + D+dg G++d  E + ++r
  MMETSP0890-20130614|4515_1 254 ELVALFAACDRDGEGTVDYTEWLGLIR 280
                 5789****************9887666 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.15
                 ---GCC-------B---HHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrda 25 
                 + F+  D +++ +++   +r++
  MMETSP0890-20130614|4515_1 490 RKFRNVDENNTKRLSMGKFRQV 511
                 68************99988887 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 2.3e-05
                 HHH---GCC-------B---HHHHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                 e+r +F ++Dkd +G i  eE+++a r
  MMETSP0890-20130614|4515_1 524 EIRLIFAAMDKDSSGSIAYEEFLRAVR 550
                 67889******************9987 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00012
                 H---GCC-------B-- CS
   PF13405.1   3 reaFklfDkdgdGkida 19 
                 ++aF+++D dg+G id 
  MMETSP0890-20130614|4515_1 562 NSAFDILDSDGSGVIDP 578
                 79*************96 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.29
                 ---B---HHHHHH CS
   PF13405.1  14 dGkidaeELrdaL 26 
                 dG+++++E+++ +
  MMETSP0890-20130614|4515_1 618 DGRVTKQEFVQYY 630
                 9********9875 PP

  == domain 6    score: 8.2 bits;  conditional E-value: 0.0011
                 H---GCC-------B---HHHHHHH. CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLrk 28 
                  + F+  D+  + k++++E+ ++L++
  MMETSP0890-20130614|4515_1 855 IRKFHTADTEASKKLSRSEFYQVLQQ 880
                 689*********************96 PP

  == domain 7    score: 6.0 bits;  conditional E-value: 0.0059
                 --GCC-------B---HHH CS
   PF13405.1   5 aFklfDkdgdGkidaeELr 23 
                 +F +f  d++G id eE++
  MMETSP0890-20130614|4515_1 893 LFSAF--DRSGLIDYEEFL 909
                 68888..99********97 PP

  == domain 8    score: 5.2 bits;  conditional E-value: 0.011
                 H---GCC-------B---HHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELr 23 
                  eaF  +D++ +  id+++L+
  MMETSP0890-20130614|4515_1 925 DEAFCFLDTNCSKLIDIDDLV 945
                 689****************96 PP

  == domain 9    score: -0.5 bits;  conditional E-value: 0.74
                 --B---HHHHHH CS
   PF13405.1  15 GkidaeELrdaL 26 
                 Gk++++E+++ +
  MMETSP0890-20130614|4515_1 982 GKVTKDEFIHYY 993
                 99******9876 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.4e-06    0.0087       5      50 ..     234     278 ..     232     280 .. 0.90
   2 !   20.9   0.0     9e-08   0.00018      15      52 ..     513     550 ..     500     552 .. 0.81
   3 ?    2.6   0.0     0.048        94      29      43 ..     563     577 ..     559     578 .. 0.87
   4 ?    0.6   0.0      0.19   3.8e+02      39      51 ..     618     630 ..     617     632 .. 0.86
   5 !   15.9   0.0   3.3e-06    0.0065       4      47 ..     868     908 ..     865     909 .. 0.84
   6 ?    0.6   0.0       0.2   3.9e+02      40      51 ..     982     993 ..     979     998 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.4e-06
   PF13833.1   5 ItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvl 50 
                 +t++e +ra++   l+ +s +e+ +lf + D+dg G +++ E++ l
  MMETSP0890-20130614|4515_1 234 LTFDEVSRAARDCELD-ISGKELVALFAACDRDGEGTVDYTEWLGL 278
                 6899999999777778.*************************9865 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 9e-08
   PF13833.1  15 allglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                 + +g+ +l++ e++ +f ++D d +G i +eEF+++++
  MMETSP0890-20130614|4515_1 513 KEFGMLELTDAEIRLIFAAMDKDSSGSIAYEEFLRAVR 550
                 4456667**************************99875 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.048
   PF13833.1  29 ilfrefDtdgdGkis 43 
                   f+ +D dg+G i+
  MMETSP0890-20130614|4515_1 563 SAFDILDSDGSGVID 577
                 679*********997 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.19
   PF13833.1  39 dGkisfeEFcvll 51 
                 dG++++ EF+++ 
  MMETSP0890-20130614|4515_1 618 DGRVTKQEFVQYY 630
                 8999999999986 PP

  == domain 5    score: 15.9 bits;  conditional E-value: 3.3e-06
   PF13833.1   4 lItreeLkralallglkg....lseeevdilfrefDtdgdGkisfeEF 47 
                 +++r e++       l++    ++++++dilf++fD+  +G i++eEF
  MMETSP0890-20130614|4515_1 868 KLSRSEFYQ-----VLQQsslrVNPSDMDILFSAFDR--SGLIDYEEF 908
                 7899*****.....44555677*************85..89******9 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.2
   PF13833.1  40 GkisfeEFcvll 51 
                 Gk++++EF+ + 
  MMETSP0890-20130614|4515_1 982 GKVTKDEFIHYY 993
                 888888887665 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0017       3.3       1      21 [.     255     275 ..     255     279 .. 0.89
   2 !    7.0   0.0    0.0017       3.4       4      23 ..     528     547 ..     525     549 .. 0.85
   3 !   10.2   0.1   0.00017      0.34       2      18 ..     562     578 ..     561     579 .. 0.89
   4 ?    2.7   0.0      0.04        79      13      22 ..     618     627 ..     618     630 .. 0.89
   5 ?    1.5   0.0     0.095   1.9e+02      15      24 ..     868     877 ..     868     878 .. 0.88
   6 ?    3.2   0.0     0.027        53      10      21 ..     897     908 ..     893     913 .. 0.88
   7 ?   -0.2   0.0      0.34   6.6e+02      14      21 ..     982     989 ..     982     993 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0017
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 l+++F a D +g G+++  E+
  MMETSP0890-20130614|4515_1 255 LVALFAACDRDGEGTVDYTEW 275
                 6789**************999 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0017
                 HHHHH--S----B-HHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                 +F a+D++ +G I  eE+ r
  MMETSP0890-20130614|4515_1 528 IFAAMDKDSSGSIAYEEFLR 547
                 69***********9999966 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00017
                 HHHHHHH--S----B-H CS
   PF13202.1   2 kdtFrafDlNgDGkIsr 18 
                 +++F+ +D +g+G I++
  MMETSP0890-20130614|4515_1 562 NSAFDILDSDGSGVIDP 578
                 678************96 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.04
                 ---B-HHHHH CS
   PF13202.1  13 DGkIsreELk 22 
                 DG+++++E+ 
  MMETSP0890-20130614|4515_1 618 DGRVTKQEFV 627
                 9*******95 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.095
                 -B-HHHHHHH CS
   PF13202.1  15 kIsreELkrl 24 
                 k+sr+E++++
  MMETSP0890-20130614|4515_1 868 KLSRSEFYQV 877
                 89******97 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.027
                 -S----B-HHHH CS
   PF13202.1  10 lNgDGkIsreEL 21 
                 ++++G I+ eE+
  MMETSP0890-20130614|4515_1 897 FDRSGLIDYEEF 908
                 599********9 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.34
                 --B-HHHH CS
   PF13202.1  14 GkIsreEL 21 
                 Gk++++E+
  MMETSP0890-20130614|4515_1 982 GKVTKDEF 989
                 9******9 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.078   1.5e+02      22      66 ..     230     276 ..     223     285 .. 0.79
   2 ?    4.3   0.0     0.015        30      26      70 ..     503     550 ..     490     569 .. 0.74
   3 !    6.0   0.0    0.0044       8.6      20      69 ..     863     912 ..     855     916 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.078
   PF12763.2  22 ednkltgdkvapvlknskle..edklekiwdladidedgkldfeefc 66 
                  +++lt d+v+   ++ +l+   ++l  ++  +d d +g++d+ e+ 
  MMETSP0890-20130614|4515_1 230 MSRHLTFDEVSRAARDCELDisGKELVALFAACDRDGEGTVDYTEWL 276
                 567899999999999998862256888999999999999****9985 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.015
   PF12763.2  26 ltgdkvapvlkn...skleedklekiwdladidedgkldfeefciamr 70 
                 l+  k  +v k+    +l++ ++  i+   d d+ g++ +eef  a+r
  MMETSP0890-20130614|4515_1 503 LSMGKFRQVTKEfgmLELTDAEIRLIFAAMDKDSSGSIAYEEFLRAVR 550
                 55555555554411147899999********************87776 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0044
   PF12763.2  20 kpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciam 69 
                 ++ ++kl+ ++  +vl++s l+ +  +    ++  d  g +d+eef   +
  MMETSP0890-20130614|4515_1 863 TEASKKLSRSEFYQVLQQSSLRVNPSDMDILFSAFDRSGLIDYEEFLYEL 912
                 566899****************99988888899*************8655 PP

>> PF11913.3  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5     3e+03     172     204 ..       6      38 ..       4      39 .. 0.89
   2 ?   -1.3   0.0      0.56   1.1e+03     138     202 ..     293     380 ..     284     398 .. 0.54
   3 ?    5.9   0.0    0.0036       7.1     150     204 ..     599     653 ..     554     668 .. 0.84
   4 ?    2.7   0.0     0.032        63     171     218 ..     983    1030 ..     948    1035 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
   PF11913.3 172 rpreeYvrlrqWlldteldDelsgrvleylWhi 204
                 ++r+++ ++++ l  +  dD+ ++  +  +Whi
  MMETSP0890-20130614|4515_1   6 ISRQSFNDYHTDLSAAITDDAYFELFVRNVWHI 38 
                 688999999999999999*************97 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.56
   PF11913.3 138 eaweelfeete.......................svpevvaaaccaqFavsrerirkrpreeYvrlrqWlldteldDelsgrvleylW 202
                 +aw+++f++ +                       ++ ++v +++   F +  +     + +e++++++ l  t ++D+ +  +++ +W
  MMETSP0890-20130614|4515_1 293 SAWRRMFGQVQqvvpqdiakrynaaahpevtagrATADTVHSEFLESFDIGDDVAGFATFREFENWHTALSATISNDDYFNLLVQSIW 380
                 5777777776653444444444443344444433344444444444444444444444445555555555556666666666666666 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0036
   PF11913.3 150 vpevvaaaccaqFavsrerirkrpreeYvrlrqWlldteldDelsgrvleylWhi 204
                 v +++  ++  q  v  e   +++++e+v++++ + +t  dD+ ++ ++  +Wh+
  MMETSP0890-20130614|4515_1 599 VADEIYREFLDQMDVGGEIDGRVTKQEFVQYYENVSSTIDDDSYFELMMRNIWHL 653
                 6666666666777777776678899*****************************6 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.032
   PF11913.3  171 krpreeYvrlrqWlldteldDelsgrvleylWhiifgkeavacpdeee 218 
                  k++++e++++++ l     dD+ ++ +l  +Wh+  g++++a p++++
  MMETSP0890-20130614|4515_1  983 KVTKDEFIHYYENLSASIEDDAYFELILRNTWHLPRGNAQTANPSNTR 1030
                  67899****************************988888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:01.08
# Mc/sec: 2440.73
//
Query:       MMETSP0890-20130614|4522_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-17   60.9   0.0      1e-16   60.2   0.0    1.3  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   7.7e-21     1e-16       1      45 [.      63     110 ..      63     114 .. 0.87

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 7.7e-21
   PF08373.5   1 ieidGpthFyrnsgvll...gktklKrriLtalGwkvisipyfeWnel 45 
                 ie+dGp+hF++  g+ +   g t++K r+L+ lGw vi++pyfeWn l
  MMETSP0890-20130614|4522_1  63 IEVDGPSHFLKCKGESRvvdGRTNFKSRLLSRLGWTVIHVPYFEWNAL 110
                 9********55555555556**************************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 377.51
//
Query:       MMETSP0890-20130614|4525_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-09   34.9  54.0      2e-05   23.6   7.3    3.6  3  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   9.4     8e-07     0.011       3      35 ..       2      34 ..       1      35 [. 0.96
   2 !    5.3  17.1   0.00077        11       3      31 ..      42      72 ..      30      76 .. 0.50
   3 !   23.6   7.3   1.5e-09     2e-05       3      32 ..      64      97 ..      63      98 .] 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8e-07
   PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                Ta P ++PT +P + P  +PT+ Pta  t++P 
  MMETSP0890-20130614|4525_1  2 TATPIAKPTAEPKATPKVEPTATPTATLTSEPN 34
                899****************************96 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.00077
   PF04886.7  3 TaqPteqPTvqPTgqPtaqPT..dqPtaqPt 31
                Ta Pt++P   PT++P a PT  ++Pta Pt
  MMETSP0890-20130614|4525_1 42 TATPTAEPRATPTAAPNAKPTvtAEPTAKPT 72
                4455555555555555555532255555555 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.5e-09
   PF04886.7  3 TaqPteqPTvqP....TgqPtaqPTdqPtaqPtd 32
                Ta+Pt++PTv+P    T++Pt  PT+ P+a Pt+
  MMETSP0890-20130614|4525_1 64 TAEPTAKPTVEPrsnsTAAPTVKPTATPIAKPTA 97
                8999999999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.97
# Mc/sec: 242.11
//
Query:       MMETSP0890-20130614|4528_1  [L=1502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-181  604.5   0.0   2.5e-181  604.1   0.0    1.2  1  PF00063.16 Myosin head (motor domain)
  ------ inclusion threshold ------
      0.012   15.6   0.1      0.057   13.4   0.0    2.1  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
      0.015   15.3   0.6      0.095   12.7   0.0    2.6  2  PF13401.1  AAA domain
      0.037   14.0   1.0       0.15   12.0   0.7    2.1  1  PF12022.3  Domain of unknown function (DUF3510)
       0.28    9.9  16.3        1.4    7.6   2.6    2.5  2  PF04849.8  HAP1 N-terminal conserved region
          2    6.0   4.9        3.8    5.1   3.4    1.4  1  PF01496.14 V-type ATPase 116kDa subunit family
        2.5    7.7   5.0         15    5.2   0.0    2.6  2  PF01935.12 Domain of unknown function DUF87
        2.9    7.3  11.3       0.42   10.0   0.4    3.2  3  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  604.1   0.0  1.5e-184  2.5e-181       2     689 .]      56     767 ..      55     767 .. 0.91

  Alignments for each domain:
  == domain 1    score: 604.1 bits;  conditional E-value: 1.5e-184
                 SBGGGSSS-SHHHHHHHHHHHHHTT--EEE---EEEEE--SS--S.TSSHHHHHHH-.---GGGS-S-HHHHHHHHHHHHHHH.......TSEEEEEEE-------HHHHHHHHHHHHHHS-SSTT......-TTHHHHHHHHHHHHHHH---BEESSETTB-----EEEEEEBTTTBB..........---EEE--S--GGGGT---TT--SBHHHHHHHTTTTHHHHHHTT---CCGSCCCHT--..--SBTTB-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----EEEEC...TTCCCEESTHHH.HHHHH....HHHTS-H.HHHHHHHHSEEEEESSEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS..--SEEE-EEE-------SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGCCS--.SCCHHHHHHHHSS----HHHHHHHHTSTTS-HHHHHHHHHHHHTTTSTTEE-TTTS.TTT-SSEEEEEESSCEEEEE-TTHHHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH...................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CSTT--SSHHHHHHHHHHHT...T--GGGEEB---EEEES CS
  PF00063.16   2 edlaaltqlsetsllenLkkrytsdliytysGlvlisvNpykklp.iyseeiieeyk.gkkreelppHifalAdeAYrsmlrr.......kenqsivisGESgagkTeatkkliqylasvssstek.....aeeeeleskilqanpileafgnaktlrnnnssrfGkfleiqfdasgsi..........vGakietylLeksRvvsqekgeRnFhiFYqLlagasaeekeelkLkdaksYaylsqsg..qlkvdgidDaeefketrkalkilglkeeeqreifkvlAaiLhlGnikfkedq...keeqavvedkee.lekia....ellgvdv.eelekallkrriktgrevvtkalnkeqaedardaLakaiYsrLfdwivekiNealsake.dkaaaviGvlDiaGFeifeknsfeqlciNyanEkLqqffnehifkleqeeyeregieweeidygldnqavidLiekkpaGilsllDeecrlpkatdesflekllktfeskhlkfskkrls.karaessftvkHyAgeVeYsaegflekNkdplsedlvellkssssslvaelfkeeelaedfeeeeaaaesaklgsakgksgkkkkfetvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvklselvgdekkacekilkel...eldkeeyrvGktkvFfr 689
                 ed+++l +l+e+ +l nL++ry +++ yty G ++i+vNpy+ l+ +y+++  e y   ++r++l pHi+a++ +AY+ + +        + +qsi++sGESgagkTe+ k+++++lasv+ss+++      +++ +   +l++ p+le+fgnakt+rn+nssrfGkf++++f+ +             vG + +tylLeksRvv+q++geR++h FY      ++++    kL + ++ +y++ +   ++ ++g  D ++ + t +alk +g+++++ ++++++lAa+L +G+++f +++   +++ a++++++e +++ a    e lg ++ e l++al++r++++++ev +++l++ +a+dardaLak iY + fdw+v +iN + s++  d +++v+G+lDi+GFe f+ n feqlciNy+nEkLqq f+  +fk+ q+ey  e+i w++i++  dn av+ Li+   +Gi+ +l+eec++p+++de f++kl   + +  ++   +r++  +  ++ ft+ HyAg V+Y+a ++le+N+d+l edl  ++k s+ +l+a+lf ++ +     +  a +++ ++++a+++s+++    tv+ +fk++l +lm+ +++t++++vrC+kPn +k ++  d+k+v eql+c Gv+e ir++raG+p+++a+ ef +r+  l++++++      +d+ +ac+++ + l   +  +  y+vG t+++f+
  MMETSP0890-20130614|4528_1  56 EDMCTLDYLHEPGVLYNLRERYFEKKPYTYTGSMCIAVNPYDWLAhLYTDDLRESYLiTENRSDLSPHIYAISATAYKGVSKInfsgkwiGTDQSILVSGESGAGKTESVKIMMKHLASVASSEDDstngdGNSQDVVRRVLESQPLLESFGNAKTVRNDNSSRFGKFTQLEFADDAAEkgrlrrsialVGSRCRTYLLEKSRVVQQAPGERTYHCFYG----VKRQNSLPTKLPNLQELRYVKDGDleTFVIEGQKDGDRHERTWDALKLVGVSDDDRNSLVRILAAVLLMGELEFMQTEtdvADSPAKLDQSNElCQNKAavavEALGAESiEALQNALTERTMRARNEVFKVPLDVTKATDARDALAKEIYLKAFDWVVANINYSTSSNLpDAKVKVVGLLDIFGFESFTINRFEQLCINYTNEKLQQKFTIDLFKTVQQEYDDEQIPWQHISF-PDNAAVLALIDG-RMGIIDVLNEECVRPRGSDEGFVSKLTTLH-GATSANDTPRFTaDRIRKNMFTILHYAGPVTYTAIKWLERNNDTLPEDLFRVAKGSKFKLLAQLFIDKSV-----TAAANHAAPSTKKASRRSTSSIAADTVSTKFKAQLSQLMDEVEKTQVQYVRCVKPNTQKSKSLYDAKMVTEQLRCAGVIEAIRVSRAGYPNKLAHGEFTRRFAALNKENTPPA----KDKDTACRNLATTLigpQGIEAGYAVGLTRIYFK 767
                 8********************************************9*********9625679****************99875222222368*******************************9888999877789*************************************8766555677999999*****************************5....56666666789999*******977889999*********************************************999666666777777777676655122245666543789***************************************************9999868899***********************************************************.8**********8.8*****************************.6656557778887778999************************************************887.....555555555666667777777777*************************************************************************************8765....78888888888887776555899*********97 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.9     5e+03      30      47 ..    1353    1371 ..    1333    1371 .. 0.75
   2 ?   13.4   0.0   3.3e-05     0.057      36      77 ..    1430    1471 ..    1427    1475 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.9
                  EESTTT.HHTTTTS.BSTTC CS
  PF00595.19   30 sevvpg.gaaeagg.lkeGD 47  
                  + v p  +aa+a+g l+ +D
  MMETSP0890-20130614|4528_1 1353 N-VAPPaSAAAAKGaLSHDD 1371
                  4.555559******9*9988 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.3e-05
                  HHTTTTS.BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEE CS
  PF00595.19   36 gaaeagg.lkeGDkIlsvNgvdvenvshdeavqaikgkkgevt 77  
                  +aae  g +++GD++   N+ d+ n s  eav++i++++ ++t
  MMETSP0890-20130614|4528_1 1430 SAAELTGrISIGDILATANNNDILNCSRREAVDIITSTR-PIT 1471
                  79*********************************9996.655 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.5e-05     0.095       4      36 ..     148     180 ..     145     239 .. 0.82
   2 ?   -1.4   0.4       1.3   2.1e+03      36      81 ..     935     984 ..     850    1014 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.5e-05
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae 36 
                  ++++v+GesG+GKT +++ +++ l  +a+ ++
  MMETSP0890-20130614|4528_1 148 DQSILVSGESGAGKTESVKIMMKHLASVASSED 180
                 5789****************9999877666555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.3
   PF13401.1  36 e....karvvfveapastspkellqkllsalglpakgrltteellealqe 81 
                 +    + +++  e+++s ++++l+++ ++a  + +++  t++e+++ lq+
  MMETSP0890-20130614|4528_1 935 NaaptEKEIIIKEVASSDESSALASARAEAEAERKRADETSAEMMRLLQQ 984
                 13335555555555566655555444444444444444666666655555 PP

>> PF12022.3  Domain of unknown function (DUF3510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7     9e-05      0.15      61     118 ..     637     694 ..     620     696 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9e-05
   PF12022.3  61 eeilqkvvskvterylekasevldsVkkteeslrrlkkkrkkesgsvsdddkiklQLy 118
                 +++ +   ++v+++++ ++s+++d V+kt+ +  r  k ++++s+s+ d  + + QL 
  MMETSP0890-20130614|4528_1 637 RSTSSIAADTVSTKFKAQLSQLMDEVEKTQVQYVRCVKPNTQKSKSLYDAKMVTEQLR 694
                 44555567899***********************************999999999996 PP

>> PF04849.8  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.6   0.00082       1.4     152     187 ..     902     937 ..     879     947 .. 0.86
   2 ?    7.2   3.4    0.0011       1.9     139     196 ..     951    1008 ..     944    1014 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00082
   PF04849.8 152 eskseaskafqleaLqeklkdleeeNerLrseashl 187
                 e+k++a+   qlea+q klk +ee N++L ++ +  
  MMETSP0890-20130614|4528_1 902 EAKEQAKLENQLEAMQAKLKAMEEANRALSEKTNAA 937
                 6677888899*******************9998765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0011
   PF04849.8  139 edesseseelrakeskseaskafqleaLqeklkdleeeNerLrseashlkeetatlee 196 
                   dess     ra+++ +++  + ++  + + l++l  +N++Lr+ea  l++e  tl+ 
  MMETSP0890-20130614|4528_1  951 SDESSALASARAEAEAERKRADETSAEMMRLLQQLRADNDKLRKEAAGLRDENHTLKR 1008
                  5666666667888888888888888899999*********************999865 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.4    0.0022       3.8      27     134 ..     848     970 ..     834    1024 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0022
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXX.....XXXXXX CS
  PF01496.14  27 vnevrrldeverklrkleseikkakielkdekekpdvpesk................evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk........veelrelssldeefka 134
                 v   rr+   +r ++++++  +++   +++  + +  ++++                e ++le++le ++++lk +ee +++L++++n    +++++ +e  + +e++                  + e k 
  MMETSP0890-20130614|4528_1 848 VLTLRRAHRATRITAQFRRFQTRKLYLMQRAASTKIQARQRcraavaayiialaeakEQAKLENQLEAMQAKLKAMEEANRALSEKTNAAPTEKEIIIKEVASSDESSalasaraeA---------EAERKR 970
                 556667777777766666655554444443333333333334555666666666666888899999999999999999999999999888777777777777777754433333220.........222222 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0086        15      25      49 ..     150     174 ..     147     184 .. 0.84
   2 ?    2.6   1.4     0.053        90      77     184 ..     847     951 ..     825    1008 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0086
  PF01935.12  25 HlAilgsTGsGKSntvavLleelle 49 
                 ++++ g++G+GK+  v+++++ l++
  MMETSP0890-20130614|4528_1 150 SILVSGESGAGKTESVKIMMKHLAS 174
                 68899****************9986 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.053
  PF01935.12  77 kvitpspeakdtelkinpwsldpeelldlleelkddepaaeaqrsvleealeqakakeekeklssdepveklleelkkekeelrklknqairrlldklerllrkggsf 184
                  v+t ++++ +t ++ ++++++ + l  +   + ++ +a+++ r++++ ++  +   e ke+++ +  +e ++ +lk  +ee++++ ++  ++    +e ++++ +s 
  MMETSP0890-20130614|4528_1 847 AVLTLRRAHRATRITAQFRRFQTRKLYLMQRAASTKIQARQRCRAAVAAYIIALA--EAKEQAKLENQLEAMQAKLK-AMEEANRALSEKTNAAPTEKEIIIKEVASS 951
                 5777888889999999999999999998888877777777776666666666666..99999999999*********.444444444444444444444444444333 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   3.0      0.42   7.1e+02      21      50 ..     908     937 ..     902     949 .. 0.80
   2 ?   10.0   0.4   0.00025      0.42      19      55 ..     982    1018 ..     979    1020 .. 0.89
   3 ?   -3.5   0.0       3.7   6.4e+03      15      50 ..    1219    1254 ..    1218    1257 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.42
  PF04977.10  21 qlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 +l+++++a qa+l+++++ n++L ++ +  
  MMETSP0890-20130614|4528_1 908 KLENQLEAMQAKLKAMEEANRALSEKTNAA 937
                 789999999999999999999999887665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00025
  PF04977.10   19 lyqlkqeiaalqaelaklkaeneeLeaevkdLksded 55  
                  l+ql+++ ++l +e a l++en+ L+++v++L+ +++
  MMETSP0890-20130614|4528_1  982 LQQLRADNDKLRKEAAGLRDENHTLKRRVAELEAGQS 1018
                  68999*************************9976765 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 3.7
  PF04977.10   15 gllalyqlkqeiaalqaelaklkaeneeLeaevkdL 50  
                  g++a ++ + e++  q++ ++ +  +++L +   +L
  MMETSP0890-20130614|4528_1 1219 GYRAAMSFRVEVVSRQNTEDEAQTPEDKLSSIHFRL 1254
                  677888899999999999999999999988766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.19u 0.39s 00:00:02.58 Elapsed: 00:00:01.68
# Mc/sec: 2142.46
//
Query:       MMETSP0890-20130614|4536_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-26   89.1   0.8    2.2e-13   49.4   0.1    2.2  2  PF00400.27 WD domain, G-beta repeat
    1.1e-05   23.7   1.1     0.0096   14.0   0.0    2.0  2  PF11715.3  Nucleoporin Nup120/160
    0.00073   17.8   0.0    0.00077   17.7   0.0    1.1  1  PF02239.11 Cytochrome D1 heme domain
    0.00079   19.0   0.4      0.048   13.2   0.0    2.1  2  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.094   12.0   0.3        0.2   10.9   0.2    1.5  1  PF13360.1  PQQ-like domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   7.9e-17   2.2e-13       2      39 .]      27      64 ..      26      64 .. 0.97
   2 !   38.6   0.0     2e-13   5.6e-10       3      39 .]      70     106 ..      68     106 .. 0.95

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 7.9e-17
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                e+++tl+gHt+ + c++fs dg++++++S+D+t ++Wd
  MMETSP0890-20130614|4536_1 27 ELLQTLEGHTDIIICCKFSKDGRRVVTASDDNTAKIWD 64
                689**********************************9 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 2e-13
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++ tl+gH+  V ++afspd+++++++S+D t r+W+
  MMETSP0890-20130614|4536_1  70 LLLTLSGHKTDVFACAFSPDRSVVVTASADETARVWN 106
                 6889********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   6.6e-05      0.18     231     258 ..      48      75 ..      30      90 .. 0.73
   2 !   14.0   0.0   3.5e-06    0.0096     227     253 ..      86     112 ..      77     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.6e-05
   PF11715.3 231 qtfvftlsrDgkLRvWnletgqclrttd 258
                    v+t s D++ ++W++ tg +l t  
  MMETSP0890-20130614|4536_1  48 GRRVVTASDDNTAKIWDTLTGRLLLTLS 75 
                 44467*****************965554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3.5e-06
   PF11715.3 227 evegqtfvftlsrDgkLRvWnletgqc 253
                    ++++v+t s+D + RvWn e+g++
  MMETSP0890-20130614|4536_1  86 FSPDRSVVVTASADETARVWNAENGTL 112
                 34499*******************987 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-07   0.00077      10      70 ..      10      70 ..       4     109 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.8e-07
                EEBTT---EEEE-----SEEEEE-------EEEE---.--EEEEE---SEEEEEETTSSSE CS
  PF02239.11 10 vverdagkvalidgdskeilavlesgyalHisrvfasdgRyvyvigRDgkltliDLwakei 70
                +v ++  k  + d++++e l++le++ ++ i  +f++dgR v +++ D + ++ D ++ + 
  MMETSP0890-20130614|4536_1 10 IVTAAGFKAYIFDAETNELLQTLEGHTDIIICCKFSKDGRRVVTASDDNTAKIWDTLTGRL 70
                55666667889***************************************99999887665 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.7e-05     0.048     111     183 ..       7      71 ..       5      78 .. 0.81
   2 !    6.1   0.1    0.0026         7     129     171 ..      62     106 ..      59     114 .] 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
   PF08662.6 111 qgrlvllaGfgnlaGeleiydvkklkkiakaeasn..atlvewspdgryvlTattsprlrvdngfkiw.sysGkll 183
                 +g++v  aGf+       i+d ++ + +++ e        +++s dgr v+Ta+       dn+ kiw +++G+ll
  MMETSP0890-20130614|4536_1   7 SGKIVTAAGFKAY-----IFDAETNELLQTLEGHTdiIICCKFSKDGRRVVTASD------DNTAKIWdTLTGRLL 71 
                 6899999999998.....9***9999999887543116789************86......599999944688887 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0026
   PF08662.6 129 iydvkklkkiak..aeasnatlvewspdgryvlTattsprlrvdn 171
                 i+d+ +   + +   ++++   + +spd   v+Ta+     rv n
  MMETSP0890-20130614|4536_1  62 IWDTLTGRLLLTlsGHKTDVFACAFSPDRSVVVTASADETARVWN 106
                 66666444444400455666789************9887777755 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   7.3e-05       0.2      35      99 ..      47     113 ..      42     114 .] 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.3e-05
   PF13360.1  35 dggtlfvasakgrlvaldaatGkvlWskslegeiegaplvaggrvvvvt..adnslvaldaetGkll 99 
                 dg+++++as++++   +d+ tG++l + s  ++ + a  ++ +r vvvt  ad++ +  +ae+G+ll
  MMETSP0890-20130614|4536_1  47 DGRRVVTASDDNTAKIWDTLTGRLLLTLSGHKTDVFACAFSPDRSVVVTasADETARVWNAENGTLL 113
                 7888899999999999999999999998874444444456666666666557778888999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 379.42
//
Query:       MMETSP0890-20130614|4529_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.61
# Mc/sec: 1182.46
//
Query:       MMETSP0890-20130614|4537_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-37  126.9   0.0    4.5e-37  126.1   0.0    1.4  1  PF04366.7  Family of unknown function (DUF500)
    8.7e-10   38.2   1.1    1.7e-09   37.3   0.8    1.5  1  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   6.6e-41   4.5e-37       2     125 ..     171     296 ..     170     297 .. 0.98

  Alignments for each domain:
  == domain 1    score: 126.1 bits;  conditional E-value: 6.6e-41
   PF04366.7   2 tglgaGfqiGveitdvVivlntkealeaftk.gklslGadlsvaagpvGrgaeadtdvse.gsapvysysksrGlfaGvslegtvlterkdanakfYgrkvtvkdIlkgeveappaakkLlevlkk 125
                 +g+g+G+qiG+eitd+ ivln+++a++af++  +l+lG++ls+a+gp+Gr+ae+++++ + g ++v+sy +s+G+f+G++l+  v+ +r d n+kfYg++ +++ Il+g+ve+p aak+L+++lk+
  MMETSP0890-20130614|4537_1 171 AGAGWGLQIGGEITDMLIVLNSQDAVDAFAStAQLTLGTELSLALGPMGRSAETNMTAGDgGVSAVFSYAHSKGFFVGIALQACVILARPDCNEKFYGKRHDTAYILSGKVEQPLAAKPLYDALKE 296
                 699****************************9*****************************99*************************************************************86 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.8   2.5e-13   1.7e-09      24      67 ..       2      58 ..       1      60 [. 0.87

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.5e-13
  PF01363.16 24 rrhhCrlCGkvvCskCsskrvekl.............eeeaaeekevrvCkeCleel 67
                rrhhCr CG + C++Css ++                 ++ + +++ rvC+ C e+l
  MMETSP0890-20130614|4537_1  2 RRHHCRRCGMLYCDTCSSYTALIHpadvvyppdwdslLSSFDPREPLRVCRGCAEQL 58
                9****************888865578888888888887788899999******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:01.26
# Mc/sec: 994.68
//
Query:       MMETSP0890-20130614|4542_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.034   14.0   0.0    1.5  1  PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
      0.053   13.4   0.8      0.053   13.4   0.5    1.5  2  PF07798.6  Protein of unknown function (DUF1640)
      0.073   12.5   0.7       0.83    9.0   0.2    2.0  2  PF03021.9  Influenza C virus M2 protein
      0.081   12.8   3.6       0.11   12.4   2.5    1.1  1  PF07464.6  Apolipophorin-III precursor (apoLp-III)
       0.53   10.0   3.8        3.2    7.4   1.3    2.0  2  PF09581.5  Stage III sporulation protein AF (Spore_III_AF)
        0.6    9.7   6.6       0.28   10.7   1.7    1.9  2  PF12325.3  TATA element modulatory factor 1 TATA binding
        1.7    7.9   6.3       0.34   10.2   0.3    2.0  2  PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
        3.2    7.5  11.5        5.2    6.9   0.6    2.2  2  PF13863.1  Domain of unknown function (DUF4200)
        3.7    7.2   9.4        2.2    7.9   2.4    2.7  2  PF01920.15 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.3e-05     0.034      36      82 ..      30      82 ..       6      83 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.3e-05
                -HHHHHHHHHH---H......HHHHTTEE-----HHHHHS-----B-GGGGS- CS
   PF09279.6 36 eeeakaiiekyepne......elkkkglLslegFlryLfSdensildpeklev 82
                ++e+k+ i++ e++        +     L + gF+++LfS  ns ++ + l+v
  MMETSP0890-20130614|4542_1 30 KTEIKTEIDALEKKIdgvnskIDFNSVVLGVGGFFSMLFSRWNSDIKRQELKV 82
                4555555555554443332224455589***************9999888776 PP

>> PF07798.6  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   3.5e-05     0.053     114     150 ..       2      47 ..       1      67 [. 0.91
   2 ?   -2.4   0.1       2.5   3.9e+03     124     132 ..      77      85 ..      68      94 .. 0.47

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.5e-05
   PF07798.6 114 Eksrireelaeqekk.........iketntkidteiagLktqlesa 150
                 Ek r++e  ae+ekk         +++++t+i tei +L ++++ +
  MMETSP0890-20130614|4542_1   2 EKKRLKEIDAEEEKKmndlvrnkdLDDMKTEIKTEIDALEKKIDGV 47 
                 899*************************************999864 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.5
   PF07798.6 124 eqekkiket 132
                  qe k+k+ 
  MMETSP0890-20130614|4542_1  77 RQELKVKQE 85 
                 333333332 PP

>> PF03021.9  Influenza C virus M2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00055      0.83      89     116 ..      26      53 ..      18      57 .. 0.85
   2 ?    2.2   0.0     0.069   1.1e+02      77      95 ..      60      78 ..      53      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00055
   PF03021.9  89 cgdikttimpeidsmekdialsrerldl 116
                   d+kt i  eid++ek i     ++d+
  MMETSP0890-20130614|4542_1  26 LDDMKTEIKTEIDALEKKIDGVNSKIDF 53 
                 579***************9888877775 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.069
   PF03021.9 77 vngfvlgrwerwcgdiktt 95
                v gf    + rw  dik  
  MMETSP0890-20130614|4542_1 60 VGGFFSMLFSRWNSDIKRQ 78
                789999999*******975 PP

>> PF07464.6  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.5   7.1e-05      0.11       3      92 ..       4      95 ..       2      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-05
   PF07464.6  3 kkakefqktleesvnelkkskdtqevvkaikegsdkvlqqlkalkasLd..ealkdangkakealeqlrekiEktaeelrkahPevekkAqe 92
                k+ ke+    e+++n+l+++kd +++ + ik + d  +++++ +++++d  + +    g  +      + +i +   ++++++ e++kkA+e
  MMETSP0890-20130614|4542_1  4 KRLKEIDAEEEKKMNDLVRNKDLDDMKTEIKTEIDALEKKIDGVNSKIDfnSVVLGVGGFFSMLFSRWNSDIKRQELKVKQEELELKKKASE 95
                7899999999************************************9984345666788888888888888888888888888888888875 PP

>> PF09581.5  Stage III sporulation protein AF (Spore_III_AF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.3    0.0021       3.2      65     106 ..      10      50 ..       1      56 [. 0.83
   2 ?    3.2   0.0     0.041        63      37      77 ..      54      94 ..      51      97 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0021
   PF09581.5  65 ieeqkkeleasqeaaaleeyrkrlekqieellkleygiktvd 106
                   e++k++++  +++ l+ ++ +++++i++l k+++g++ ++
  MMETSP0890-20130614|4542_1  10 DAEEEKKMNDLVRNKDLDDMKTEIKTEIDALEKKIDGVN-SK 50 
                 5688999**************************999998.44 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.041
   PF09581.5 37 sPvlelfrkdldlevaalkssedpvketieeqkkeleasqe 77
                + v+ ++++ +++ ++ ++s+ + ++ ++++++ el+++ +
  MMETSP0890-20130614|4542_1 54 NSVVLGVGGFFSMLFSRWNSDIKRQELKVKQEELELKKKAS 94
                67888899999999999999777777777777666666654 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   0.00019      0.28      37      86 ..       3      52 ..       1      60 [. 0.90
   2 ?    1.6   0.0      0.12   1.9e+02      17      40 ..      66      89 ..      52      96 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
   PF12325.3 37 keelarLekerdeareEivklteeneelkekkkeleelekeleeleqrye 86
                k++l+++ +e ++  +++v+     + ++e k+e+++lek+++ ++++ +
  MMETSP0890-20130614|4542_1  3 KKRLKEIDAEEEKKMNDLVRNKDLDDMKTEIKTEIDALEKKIDGVNSKID 52
                78999**************************************9999876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.12
   PF12325.3 17 qlveklsstirrlEgElaslkeel 40
                +l ++ +s i+r E  + + + el
  MMETSP0890-20130614|4542_1 66 MLFSRWNSDIKRQELKVKQEELEL 89
                566677777777776655544444 PP

>> PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00022      0.34     135     164 ..      20      49 ..       5      50 .. 0.94
   2 ?    0.7   0.7      0.18   2.7e+02     135     167 ..      69     101 .]      65     101 .] 0.72

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00022
   PF05700.6 135 kvyneqLeallkrlekelaelkeeieevNr 164
                 +v+n++L++++++++ e+++l+++i  vN 
  MMETSP0890-20130614|4542_1  20 LVRNKDLDDMKTEIKTEIDALEKKIDGVNS 49 
                 589**************************6 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.18
   PF05700.6 135 kvyneqLeallkrlekelaelkeeieevNreRK 167
                   +n++ +++  ++++e  elk++++e  + RK
  MMETSP0890-20130614|4542_1  69 SRWNSDIKRQELKVKQEELELKKKASESWWPRK 101
                 567777888878888888888888777666666 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.6    0.0075        11      64     105 ..       4      45 ..       1      56 [. 0.66
   2 ?    6.9   0.6    0.0034       5.2      20      43 ..      72      95 ..      65      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0075
   PF13863.1  64 raekkaeeekkekkekeeeikklkaqleelkaeiekleekle 105
                 + +k++++e+++k +     k+l +  +e+k+ei++le+k++
  MMETSP0890-20130614|4542_1   4 KRLKEIDAEEEKKMNDLVRNKDLDDMKTEIKTEIDALEKKID 45 
                 445666666666666666667777777777777777777764 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0034
   PF13863.1 20 reeierkeeelkereeelekkqee 43
                +++i+r+e ++k++e el+kk +e
  MMETSP0890-20130614|4542_1 72 NSDIKRQELKVKQEELELKKKASE 95
                567888888888888888888665 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.4    0.0014       2.2      56      85 ..      22      51 ..       3      55 .. 0.68
   2 ?    1.7   0.2      0.13   1.9e+02      65      77 ..      78      90 ..      65      96 .. 0.46

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0014
                EEEEHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15 56 vkqdkeevkeeLeerketlekeiktlekql 85
                  +d++++k+e +++++ lek+i+ +++++
  MMETSP0890-20130614|4542_1 22 RNKDLDDMKTEIKTEIDALEKKIDGVNSKI 51
                445777777777777777777777666655 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.13
                HHHHHHHHHHHHH CS
  PF01920.15 65 eeLeerketleke 77
                +eL+ ++e+le +
  MMETSP0890-20130614|4542_1 78 QELKVKQEELELK 90
                2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1459  (0.106714); expected 273.4 (0.02)
Passed bias filter:                      990  (0.0724108); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 314.33
//
Query:       MMETSP0890-20130614|4550_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   27.2   0.1    3.3e-06   26.6   0.0    1.3  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.4e-10   3.3e-06       1      29 [.      40      71 .]      40      71 .] 0.86

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.4e-10
   PF08373.5  1 ieidGpthFyrnsgvll...gktklKrriLta 29
                ieidGp+h+++  ++ +   g tk+K r+L++
  MMETSP0890-20130614|4550_1 40 IEIDGPSHYLSSKEKQRienGRTKFKSRLLRQ 71
                9********88885555599**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.76
# Mc/sec: 223.87
//
Query:       MMETSP0890-20130614|4543_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-55  185.8   0.0    4.5e-55  185.4   0.0    1.2  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    1.5e-19   69.7   0.0    1.7e-19   69.5   0.0    1.0  1  PF00389.25 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
     0.0024   17.6   0.0     0.0039   16.9   0.0    1.3  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
     0.0055   16.4   0.1     0.0086   15.8   0.1    1.2  1  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
  ------ inclusion threshold ------
      0.024   14.8   0.0      0.054   13.6   0.0    1.6  1  PF13478.1  XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   1.6e-58   4.5e-55       1     178 []      52     249 ..      52     249 .. 0.94

  Alignments for each domain:
  == domain 1    score: 185.4 bits;  conditional E-value: 1.6e-58
                 HHHHHHHHTTCCCHHHCCCTT--.--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH---EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCCS-TT-EEEE---GGGB-HHHHHHHHHH-TT-EEEES--TTH....................--GHHHHH...HCSTTEEE--S-T CS
  PF02826.14   1 lalllallrklkeadeevregewssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelgaevvsleellaesDvvslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeE....................plpedspl...lelpnviltPHia 178
                 ++l+lal r+l +  ++vr g++ s + l+g ++++k vGiiG+G+IG+ ++ + k++g+++layd+++++e+   + ga++v+l++ll esDvvslh+plt++tr lin++++++mk++a liN++RGgl+d++aLlea+k+++ia+++lDv+e+E                    pl  d+ l   ++ pnvi+tPH a
  MMETSP0890-20130614|4543_1  52 VTLCLALNRQLIKSMDRVRGGNY-SLSGLVGFDMHRKVVGIIGTGKIGRCTMAIYKGMGCQILAYDPYPHPEA--IAIGAKYVELNQLLLESDVVSLHCPLTESTRYLINEHSIELMKNTATLINVSRGGLIDTKALLEAIKNRTIAAVGLDVYEHEakvffsdpsldsdhtpgsslPLVWDDSLaslASKPNVIITPHSA 249
                 6899*******************.9*******************************************99766..889***************************************************************************************99999988888877766544333899********87 PP

>> PF00389.25  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   6.1e-23   1.7e-19      55     132 ..       3     280 ..       1     281 [. 0.99

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 6.1e-23
                 HCC-..TT--EEEES----TTB-HHHHHH---EEE--TTTTHHHHHHHH......................................................................................................................................................................................................T-CHHHHHHHHHHHHHHHHHHH--G--TCCE CS
                 xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00389.25  55 lekl..pkLkviatagvGvDniDldaakerGIlVtnvpgystesvAEla......................................................................................................................................................................................................fateeaqenmaeeaaenlvaflkgespanav 132
                 le+l  +++++ia +++G+D +Dl  a+e+GI+V +vp+ys+ +vAE+                                                                                                                                                                                                       f+t ea+  +a  +++nl +f+ g++ +n v
  MMETSP0890-20130614|4543_1   3 LEALhkQGIECIAMRCAGFDRVDLHVAEELGITVLRVPAYSPYAVAEHSvtlclalnrqliksmdrvrggnyslsglvgfdmhrkvvgiigtgkigrctmaiykgmgcqilaydpyphpeaiaigakyvelnqlllesdvvslhcpltestrylinehsielmkntatlinvsrgglidtkalleaiknrtiaavgldvyeheakvffsdpsldsdhtpgsslplvwddslaslaskpnviitphsaFLTAEALSTIASVTITNLHEFAVGGPYTNLV 280
                 67777799**************************************************************************************************************************************************************************************************************************************************************************9998 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0039       3     118 ..      88     200 ..      86     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.4e-06
                 EBEEB-------HHHHHHHH---EEEE--SSHHHHHHHHHTTEEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHHHH---EEEE-- CS
  PF03446.10   3 kigfiGlGvMGspmalnllkagyevavynrtkekveelvaegakaaesieelvasldvvilmvkagkavdeviegellealekgdilidgstsspedtrelakelkekglrfldap 118
                  +g+iG+G++G+  +   +  g+++ +y+  +    e++a gak +e  ++l+ + dvv l  + ++ ++ +i+++ +e +++ ++li  s     dt++l +++k++ +  ++  
  MMETSP0890-20130614|4543_1  88 VVGIIGTGKIGRCTMAIYKGMGCQILAYDPYP--HPEAIAIGAKYVEL-NQLLLESDVVSLHCPLTESTRYLINEHSIELMKNTATLINVSRGGLIDTKALLEAIKNRTIAAVGLD 200
                 58***********9999************775..45666678877765.5566667*******************999********************************999865 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.1e-06    0.0086      23     123 ..      86     187 ..      80     208 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.1e-06
                 --EEEEE---------HHHHHH---EEEE--S-HHHHHHHHC---EE--HHHCTTT-SEEEE....-----SSB-HHHHCCS-TTEEEEE---TTTTBTHHHHHT CS
  PF00670.16  23 GkvavvaGyGdvGkGcaaslkalGarvivtevdPicalqaameGfevvtleevvkkadivvt....ttGnkdiitlehlekmkddaivcniGhfdseidvaalea 123
                  kv+ ++G G +G+ + a  k++G++++    dP     a+  G + v+l+++  ++d+v      t  ++ +i+ + +e mk++a + n+      id++al +
  MMETSP0890-20130614|4543_1  86 RKVVGIIGTGKIGRCTMAIYKGMGCQIL--AYDPYPHPEAIAIGAKYVELNQLLLESDVVSLhcplTESTRYLINEHSIELMKNTATLINVSRGG-LIDTKALLE 187
                 58999********************976..57999999********************9854222245678899999*************97643.466665554 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.054       3      85 ..      91     198 ..      89     209 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
                 EE-----HHHHHHHHHH---EEEEEES-..............GGG-TT-SEEES-H....................HHHHH.HS---TT-E.EE.--S-HHHHHHHHHHHSSS.--SBB- CS
   PF13478.1   3 ifGaghvaqalaklaaelgfrvtvvddr..............eerfpaadeveklp....................aeeleealsldenta.vv.lthdhklDaelleaalkk.daayig 85 
                 i+G g++++ ++++ + +g+++  +d+                            +                        e +++l +nta ++ ++++  +D ++l +a+k+  +a +g
  MMETSP0890-20130614|4543_1  91 IIGTGKIGRCTMAIYKGMGCQILAYDPYphpeaiaigakyveL------------NqlllesdvvslhcpltestrYLINEHSIELMKNTAtLInVSRGGLIDTKALLEAIKNrTIAAVG 198
                 9**************************9443333333222220............123344444444455544432222224458999998458899******99988888763555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.96
# Mc/sec: 723.90
//
Query:       MMETSP0890-20130614|4553_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00025   20.6   6.6     0.0094   15.6   4.6    2.8  1  PF01412.13 Putative GTPase activating protein for Arf
    0.00098   19.1   0.0      0.035   14.1   0.0    2.4  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0045   16.7   0.0       0.35   10.6   0.0    2.6  2  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   4.6   2.1e-06    0.0094       3      84 ..     105     193 ..     103     228 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.1e-06
                 HHHHHCCSGGGCB-TTT-..............-BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCC CS
  PF01412.13   3 llkellkepenkvCaDCg..............aknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileak 84 
                 +l  + ++++n  C +C+                +  Wa +  g++lC +C     s      +++Sl+ld +t+   ++l  +gN+++ne+ +++
  MMETSP0890-20130614|4553_1 105 VLAGIFSREGNTECYECRskihhfdnewicenDGETAWANIRQGTILCWSCGER--S-----GNCRSLELDAFTSAMNAVLLCGGNHRCNEFKNNE 193
                 56667788888888888533333333333321334478888888*******763..3.....3589*************************98776 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.039   1.8e+02      41      57 ..     255     271 ..     247     288 .. 0.76
   2 !   14.1   0.0   7.7e-06     0.035       8      63 ..     486     537 ..     480     540 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.039
                 TSBSTTCEEEEETTEBG CS
  PF00595.19  41 gglkeGDkIlsvNgvdv 57 
                 + l++GD I++v+ + v
  MMETSP0890-20130614|4553_1 255 ARLQAGDYIVGVGTKRV 271
                 449*********98776 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 7.7e-06
                 TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHH CS
  PF00595.19   8 krgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshd 63 
                 ++g+lG++lk+  +     + v +v+p +a + +g++ G  +  v+g +v++++h+
  MMETSP0890-20130614|4553_1 486 EPGPLGIRLKETPE----AVLVERVQPSSASAIAGIRQGYALALVDGLPVASLQHA 537
                 88********9888....7*********8777777*****************9985 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.017        78      30      53 ..     255     278 ..     227     288 .. 0.75
   2 !   10.6   0.0   7.7e-05      0.35       3      59 ..     490     544 ..     488     546 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.017
   PF13180.1  30 aglkpGDiilkvdgkkvksltdlk 53 
                 a l++GD i+ v+ k+v    d++
  MMETSP0890-20130614|4553_1 255 ARLQAGDYIVGVGTKRVWRFHDVV 278
                 569************995555554 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 7.7e-05
   PF13180.1   3 iGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslllkk 59 
                 +G+++++  +   vlv  V++ss +a ag+++G  +  vdg +v sl++   ll  +
  MMETSP0890-20130614|4553_1 490 LGIRLKETPE--AVLVERVQPSSASAIAGIRQGYALALVDGLPVASLQHALDLLQWH 544
                 7999988887..99*99*****************************99998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:01.14
# Mc/sec: 1173.17
//
Query:       MMETSP0890-20130614|4552_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-29  101.6   0.4      1e-09   38.0   0.0    6.6  7  PF13041.1  PPR repeat family
      8e-27   91.1   0.8    1.8e-05   24.5   0.0    8.7  9  PF13812.1  Pentatricopeptide repeat domain
    4.9e-21   73.0   7.0     0.0007   19.2   0.0    8.5  9  PF01535.15 PPR repeat
    0.00082   18.1   0.0         12    4.6   0.0    4.0  4  PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
     0.0012   18.1   3.2        5.2    6.5   0.0    5.7  8  PF12854.2  PPR repeat
  ------ inclusion threshold ------
      0.013   14.9   0.0        3.6    7.0   0.0    3.6  3  PF00637.15 Region in Clathrin and VPS
       0.17   11.7   2.0         17    5.4   0.0    3.9  4  PF02793.17 Hormone receptor domain


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.6e-05      0.09       6      36 ..      54      84 ..      53      89 .. 0.93
   2 !   10.4   0.0   0.00022      0.43       4      34 ..      89     119 ..      86     136 .. 0.76
   3 ?   -0.3   0.0      0.49   9.6e+02       8      28 ..     129     149 ..     124     154 .. 0.81
   4 !   15.5   0.0   5.9e-06     0.012      12      47 ..     168     203 ..     164     206 .. 0.88
   5 !   19.8   0.0   2.5e-07   0.00049       2      41 ..     193     232 ..     192     237 .. 0.92
   6 !   38.0   0.0   5.2e-13     1e-09       3      49 ..     295     341 ..     292     342 .. 0.96
   7 ?   -0.4   0.0      0.54   1.1e+03      34      48 ..     362     376 ..     358     378 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.6e-05
   PF13041.1  6 YNtlIsglckkgkveeAfklfneMkkrgikP 36
                +N+ ++++ ++g++  A++l++ Mkk+ i P
  MMETSP0890-20130614|4552_1 54 CNSALDYFRQEGRWVCAIELLSRMKKNSIYP 84
                59999**********************9987 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00022
   PF13041.1   4 vtYNtlIsglckkgkveeAfklfneMkkrgi 34 
                  +YN++I+++ ++g++++A+++  + +++gi
  MMETSP0890-20130614|4552_1  89 TAYNAVIRSCEEHGEWRMALDFALDSRSSGI 119
                 58*****************998666666665 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.49
   PF13041.1   8 tlIsglckkgkveeAfklfne 28 
                 + ++++++  k++ A++l++e
  MMETSP0890-20130614|4552_1 129 SSLKACAQGSKYQLALELLDE 149
                 567899999999*****9998 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 5.9e-06
   PF13041.1  12 glckkgkveeAfklfneMkkrgikPnvyTYsilikg 47 
                 ++ ++g+v+  ++++++M+k gi+P + +Y   i  
  MMETSP0890-20130614|4552_1 168 ACSNAGEVDLTLQILQDMQKQGITPCATSYAAAIAV 203
                 67899**********************999887765 PP

  == domain 5    score: 19.8 bits;  conditional E-value: 2.5e-07
   PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTY 41 
                 +  +Y + I  + k g++   ++l++eM+ +g++P+v TY
  MMETSP0890-20130614|4552_1 193 CATSYAAAIAVCEKTGRWTTGIQLLDEMRAKGLTPSVETY 232
                 5678999********************************9 PP

  == domain 6    score: 38.0 bits;  conditional E-value: 5.2e-13
   PF13041.1   3 vvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglc 49 
                  v++N+ Is++ k  +++  ++lf+ M ++g++Pnv  Y++ i++++
  MMETSP0890-20130614|4552_1 295 LVAFNAAISACEKSHQWDRVLELFDNMCDNGLEPNVGVYNSAINACA 341
                 59*******************************************96 PP

  == domain 7    score: -0.4 bits;  conditional E-value: 0.54
   PF13041.1  34 ikPnvyTYsilikgl 48 
                  kP+v T   li ++
  MMETSP0890-20130614|4552_1 362 TKPDVSTIDQLIWAC 376
                 58******9999887 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.02        38       5      34 .]      55      84 ..      47      86 .. 0.85
   2 ?    5.5   0.0     0.011        22       3      22 ..      90     109 ..      88     119 .. 0.90
   3 ?    2.6   0.0     0.095   1.9e+02       6      28 ..     129     151 ..     124     155 .. 0.82
   4 !   21.1   0.0   1.1e-07   0.00021       3      34 .]     161     192 ..     159     192 .. 0.94
   5 !   14.8   0.0   1.2e-05     0.023       2      34 .]     195     227 ..     194     227 .. 0.96
   6 ?   -1.5   0.0         2     4e+03       8      32 ..     236     260 ..     229     261 .. 0.73
   7 !   24.5   0.0   9.4e-09   1.8e-05       2      34 .]     296     328 ..     295     328 .. 0.96
   8 ?    4.6   0.0     0.022        43       2      24 ..     331     353 ..     330     364 .. 0.76
   9 ?    1.5   0.0      0.22   4.2e+02       3      19 ..     368     384 ..     366     394 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.02
   PF13812.1  5 ntlitalaksgrpeaAlalleeMeqqgvkP 34
                n+ ++ +   gr+  A +ll++M+++ + P
  MMETSP0890-20130614|4552_1 55 NSALDYFRQEGRWVCAIELLSRMKKNSIYP 84
                6778888888888889********987654 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.011
   PF13812.1   3 tyntlitalaksgrpeaAla 22 
                  yn++i+ + + g++ +Al+
  MMETSP0890-20130614|4552_1  90 AYNAVIRSCEEHGEWRMALD 109
                 6****************976 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.095
   PF13812.1   6 tlitalaksgrpeaAlalleeMe 28 
                 + ++a+a     ++Al+ll+e +
  MMETSP0890-20130614|4552_1 129 SSLKACAQGSKYQLALELLDEQR 151
                 55899999999********9966 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 1.1e-07
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 + ++ ++a++++g++++ l++l +M++qg++P
  MMETSP0890-20130614|4552_1 161 SHAATLWACSNAGEVDLTLQILQDMQKQGITP 192
                 56789*************************99 PP

  == domain 5    score: 14.8 bits;  conditional E-value: 1.2e-05
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  +y++ i  + k gr+    +ll+eM+++g++P
  MMETSP0890-20130614|4552_1 195 TSYAAAIAVCEKTGRWTTGIQLLDEMRAKGLTP 227
                 69*****************************99 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 2
   PF13812.1   8 italaksgrpeaAlalleeMeqqgv 32 
                 ++ ++  g++++ ++l ++ + +gv
  MMETSP0890-20130614|4552_1 236 LNLALMGGEWDRSFELINDCRLRGV 260
                 5566667999999999999887776 PP

  == domain 7    score: 24.5 bits;  conditional E-value: 9.4e-09
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 + +n+ i a+ ks++++++l+l++ M ++g++P
  MMETSP0890-20130614|4552_1 296 VAFNAAISACEKSHQWDRVLELFDNMCDNGLEP 328
                 679****************************99 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.022
   PF13812.1   2 etyntlitalaksgrpeaAlall 24 
                   yn+ i+a+a  ++ ++ l ll
  MMETSP0890-20130614|4552_1 331 GVYNSAINACAMTNQSARGLFLL 353
                 57*********888877755555 PP

  == domain 9    score: 1.5 bits;  conditional E-value: 0.22
   PF13812.1   3 tyntlitalaksgrpea 19 
                 t + li+a+ + g++++
  MMETSP0890-20130614|4552_1 368 TIDQLIWACISDGNWNE 384
                 56789*********987 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0002      0.39       4      30 ..      55      81 ..      54      82 .. 0.88
   2 !   11.2   0.0   0.00013      0.25       2      22 ..      90     110 ..      89     119 .. 0.89
   3 ?    3.4   0.0     0.039        77       7      25 ..     131     149 ..     125     149 .. 0.87
   4 !    7.1   0.0    0.0028       5.4       9      31 .]     168     190 ..     166     190 .. 0.93
   5 !   12.2   0.0   6.5e-05      0.13       2      31 .]     196     225 ..     195     225 .. 0.92
   6 ?   -0.4   0.0      0.67   1.3e+03      14      31 .]     243     260 ..     237     260 .. 0.87
   7 !   19.2   0.0   3.6e-07    0.0007       1      31 []     296     326 ..     296     326 .. 0.96
   8 ?    3.0   0.0     0.053     1e+02       2      15 ..     332     345 ..     331     355 .. 0.80
   9 ?   -0.6   0.0      0.75   1.5e+03       6      18 ..     372     384 ..     371     388 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0002
  PF01535.15  4 nslIsgyckaGkleeAlelfkeMkekG 30
                ns ++ + ++G++  A+el+ +Mk++ 
  MMETSP0890-20130614|4552_1 55 NSALDYFRQEGRWVCAIELLSRMKKNS 81
                777888999***************986 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00013
  PF01535.15   2 tynslIsgyckaGkleeAlel 22 
                 +yn++I+++  +G++++Al++
  MMETSP0890-20130614|4552_1  90 AYNAVIRSCEEHGEWRMALDF 110
                 7*****************986 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.039
  PF01535.15   7 IsgyckaGkleeAlelfke 25 
                 ++++++  k++ Alel++e
  MMETSP0890-20130614|4552_1 131 LKACAQGSKYQLALELLDE 149
                 789**************98 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0028
  PF01535.15   9 gyckaGkleeAlelfkeMkekGv 31 
                 +++ aG+++  l+++++M++ G+
  MMETSP0890-20130614|4552_1 168 ACSNAGEVDLTLQILQDMQKQGI 190
                 89******************997 PP

  == domain 5    score: 12.2 bits;  conditional E-value: 6.5e-05
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                 +y + I ++ k G++   ++l++eM+ kG+
  MMETSP0890-20130614|4552_1 196 SYAAAIAVCEKTGRWTTGIQLLDEMRAKGL 225
                 6778899********************996 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.67
  PF01535.15  14 GkleeAlelfkeMkekGv 31 
                 G+++  +el+++ + +Gv
  MMETSP0890-20130614|4552_1 243 GEWDRSFELINDCRLRGV 260
                 99********99888886 PP

  == domain 7    score: 19.2 bits;  conditional E-value: 3.6e-07
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                 v++n+ Is++ k+ +++ +lelf+ M ++G+
  MMETSP0890-20130614|4552_1 296 VAFNAAISACEKSHQWDRVLELFDNMCDNGL 326
                 78**************************996 PP

  == domain 8    score: 3.0 bits;  conditional E-value: 0.053
  PF01535.15   2 tynslIsgyckaGk 15 
                 +yns I++++  ++
  MMETSP0890-20130614|4552_1 332 VYNSAINACAMTNQ 345
                 6********98776 PP

  == domain 9    score: -0.6 bits;  conditional E-value: 0.75
  PF01535.15   6 lIsgyckaGklee 18 
                 lI ++ + G++ e
  MMETSP0890-20130614|4552_1 372 LIWACISDGNWNE 384
                 899*******998 PP

>> PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0086        17     121     139 ..      68      86 ..      57      95 .. 0.80
   2 ?    2.6   0.0     0.023        44     120     140 ..     175     195 ..     170     211 .. 0.83
   3 !    4.6   0.0     0.006        12     122     143 ..     212     233 ..     205     242 .. 0.87
   4 ?    1.1   0.0     0.069   1.4e+02     117     148 ..     308     339 ..     301     351 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0086
   PF06239.6 121 elaidvLeqmeeygvmPdk 139
                  +ai++L +m+++ + P+ 
  MMETSP0890-20130614|4552_1  68 VCAIELLSRMKKNSIYPKP 86 
                 59**************975 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.023
   PF06239.6 120 qelaidvLeqmeeygvmPdke 140
                 ++l++++L++m+++g++P + 
  MMETSP0890-20130614|4552_1 175 VDLTLQILQDMQKQGITPCAT 195
                 6899**************765 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.006
   PF06239.6 122 laidvLeqmeeygvmPdketea 143
                  +i++L++m  +g++P+ et+ 
  MMETSP0890-20130614|4552_1 212 TGIQLLDEMRAKGLTPSVETYL 233
                 589****************975 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.069
   PF06239.6 117 prqqelaidvLeqmeeygvmPdketeallvni 148
                  +q + ++++ ++m ++g+ P+  +++  +n+
  MMETSP0890-20130614|4552_1 308 SHQWDRVLELFDNMCDNGLEPNVGVYNSAINA 339
                 567788999*************9988777765 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.03        58      19      34 .]      63      78 ..      62      78 .. 0.90
   2 ?   -3.3   0.0         3   5.8e+03       5      15 ..      86      96 ..      85      97 .. 0.74
   3 ?   -3.3   0.1         3   5.9e+03      26      32 ..     143     149 ..     143     149 .. 0.92
   4 ?   -1.9   0.0       1.1   2.1e+03      20      34 .]     172     186 ..     171     186 .. 0.88
   5 ?    2.2   0.0     0.056   1.1e+02      21      34 .]     208     221 ..     206     221 .. 0.78
   6 ?   -1.2   0.0      0.69   1.3e+03       1      10 [.     223     232 ..     223     232 .. 0.94
   7 ?    0.2   0.0      0.25   4.8e+02      19      33 ..     307     321 ..     294     322 .. 0.70
   8 !    6.5   0.0    0.0026       5.2       1      16 [.     324     339 ..     324     341 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.03
   PF12854.2 19 raGrvdeAvelldeMe 34
                ++Gr   A+ell +M+
  MMETSP0890-20130614|4552_1 63 QEGRWVCAIELLSRMK 78
                5899999********6 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3
   PF12854.2  5 PdvvTYNtLId 15
                P +  YN +I 
  MMETSP0890-20130614|4552_1 86 PQETAYNAVIR 96
                56667**9996 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 3
   PF12854.2  26 Avellde 32 
                 A+ellde
  MMETSP0890-20130614|4552_1 143 ALELLDE 149
                 89***98 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.1
   PF12854.2  20 aGrvdeAvelldeMe 34 
                 aG vd  +++l +M+
  MMETSP0890-20130614|4552_1 172 AGEVDLTLQILQDMQ 186
                 899999999999995 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.056
   PF12854.2  21 GrvdeAvelldeMe 34 
                 Gr    ++lldeM+
  MMETSP0890-20130614|4552_1 208 GRWTTGIQLLDEMR 221
                 6666779******7 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 0.69
   PF12854.2   1 kGlkPdvvTY 10 
                 kGl P v TY
  MMETSP0890-20130614|4552_1 223 KGLTPSVETY 232
                 79*******9 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 0.25
   PF12854.2  19 raGrvdeAvelldeM 33 
                 ++   d+ +el+d M
  MMETSP0890-20130614|4552_1 307 KSHQWDRVLELFDNM 321
                 555668889****99 PP

  == domain 8    score: 6.5 bits;  conditional E-value: 0.0026
   PF12854.2   1 kGlkPdvvTYNtLIdG 16 
                 +Gl+P+v  YN+ I++
  MMETSP0890-20130614|4552_1 324 NGLEPNVGVYNSAINA 339
                 69**********9997 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.24   4.8e+02      74      89 ..      92     107 ..      85     112 .. 0.84
   2 ?    2.0   0.0     0.063   1.2e+02      11      52 ..     198     237 ..     194     248 .. 0.84
   3 ?    7.0   0.0    0.0018       3.6      11      57 ..     299     345 ..     293     386 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.24
                 THHHHHHHT-SSHHHH CS
  PF00637.15  74 ekvaklcekadlyeea 89 
                 + v++ ce+++ +++a
  MMETSP0890-20130614|4552_1  92 NAVIRSCEEHGEWRMA 107
                 5789999999999877 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.063
                 TTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHH CS
  PF00637.15  11 sevvklfekaglleelieyLekvlketsrenpavqtallely 52 
                  + +  +ek+g+++  i++L + ++++   +p+v+t l+ l+
  MMETSP0890-20130614|4552_1 198 AAAIAVCEKTGRWTTGIQLLDEMRAKG--LTPSVETYLASLN 237
                 5678999**************999766..7799999888776 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0018
                 TTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT- CS
  PF00637.15  11 sevvklfekaglleelieyLekvlketsrenpavqtallelyakyed 57 
                 ++ ++++ek+++++ ++e+  +  +++ + n+ v+++ + + a +++
  MMETSP0890-20130614|4552_1 299 NAAISACEKSHQWDRVLELFDNMCDNGLEPNVGVYNSAINACAMTNQ 345
                 67899999*************99999988889999999999999987 PP

>> PF02793.17  Hormone receptor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0087        17      40      53 ..      92     105 ..      59     114 .. 0.87
   2 ?   -0.6   0.0      0.61   1.2e+03      44      54 ..     202     212 ..     191     218 .. 0.84
   3 ?   -2.1   0.0       1.8   3.5e+03      43      55 ..     302     314 ..     295     323 .. 0.76
   4 ?    2.3   0.0      0.08   1.6e+02      41      55 ..     371     385 ..     357     392 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0087
  PF02793.17  40 gnasrnCtedGqWs 53 
                 + + r C+e+G+W 
  MMETSP0890-20130614|4552_1  92 NAVIRSCEEHGEWR 105
                 5799*********7 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.61
  PF02793.17  44 rnCtedGqWse 54 
                   C++ G+W++
  MMETSP0890-20130614|4552_1 202 AVCEKTGRWTT 212
                 57*******86 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.8
  PF02793.17  43 srnCtedGqWsek 55 
                    C+++ qW+++
  MMETSP0890-20130614|4552_1 302 ISACEKSHQWDRV 314
                 5679999999875 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.08
  PF02793.17  41 nasrnCtedGqWsek 55 
                  +   C +dG+W+e+
  MMETSP0890-20130614|4552_1 371 QLIWACISDGNWNET 385
                 56789*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.82
# Mc/sec: 1154.34
//
Query:       MMETSP0890-20130614|4556_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.73
# Mc/sec: 128.02
//
Query:       MMETSP0890-20130614|4558_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-35  120.8   0.1    2.9e-35  120.6   0.0    1.1  1  PF01196.14 Ribosomal protein L17


Domain annotation for each model (and alignments):
>> PF01196.14  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   2.1e-39   2.9e-35       1      97 []      21     117 .]      21     117 .] 0.99

  Alignments for each domain:
  == domain 1    score: 120.6 bits;  conditional E-value: 2.1e-39
                 HHHHHHHHHHH---EEEEHHHHHHH---HHHHHHHHT---HHHHHHHHTTS--HHHHHHHHHTHHHHTTT-----EEEEEEEE------EEEEEEE- CS
  PF01196.14   1 llrnlvtsLieherIetTlakAkelrklveklitlakkkelaarrqalavlkdkevvkklfdelapryadrnggYtrilklgpRkgDaaemailelv 97 
                 llr+l+t+ i+h+rI+tTl +Ake+rk+v+++i+lak+++l++rrqa+a+++dk++v+ lf++   ry+dr ggYtr++++ pR gD+++m ilelv
  MMETSP0890-20130614|4558_1  21 LLRSLTTETIRHGRITTTLVRAKEVRKHVDHMIQLAKRGDLHSRRQAMAWIYDKQLVHALFEQAGDRYEDRDGGYTRVIRTMPRAGDNSPMGILELV 117
                 799*********************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.53
# Mc/sec: 529.01
//
Query:       MMETSP0890-20130614|4559_1  [L=1196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-44  149.5  24.2      1e-43  149.1  16.8    1.1  1  PF00999.16 Sodium/hydrogen exchanger family
    4.5e-22   78.1   0.3    9.3e-10   37.7   0.1    2.9  3  PF00194.16 Eukaryotic-type carbonic anhydrase


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1  16.8   1.5e-47     1e-43       8     383 ..     379     798 ..     372     799 .. 0.83

  Alignments for each domain:
  == domain 1    score: 149.1 bits;  conditional E-value: 1.5e-47
                 XXXXXX....XXXXXX.....XXXXXXXXXXXXXXXXXXXX.....X.............---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXGGGXXHHHHHHHH.HHHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXX.XXXX.XXXXXX...XXXXXXXXXXXXXXXX.....X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXHHHHTTXXXX.XXXHHHHXXXHHHHX...XXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00999.16   8 allagl....larrlk.....lpevvglilaGlllGpsglglvepsl.............eldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllallllilglslleallfgallsatdpvvvlavlkeegrvnkrlgtlilgesvlnDavavvllavlialageeagglsdlg.....lliliflvvalgglllglviglllrlltkftsgdrelevllvlllallaallae...vlglsgilgaflaGlvls.eyefsnelsek.lepfgk...flfeplfFvlvGlsldlkvllt..nglsllllvllllvaillgkllgvfllsrll......glslrealiigflglqrgavalalaalglsl...glisr............elfalllavvlltvlvqGltlspllk 383
                 +l++g+    ++         +p++++ +l G ++ ++     e++              ++d ++++ + lp+llF    +l++  + + ++++ +la +gvl+s++l+Gl + +  l l++s++ +l +g+llsatdp++vl ++ +e   +k l   i ges++nD+++v+l++v+  ++  + g+ ++++      + +if+  +lg+l++ +++ ++ +  +++ + d+++++++ l+ a+l ++l++   + + sgil  +++ +v+s + ++   +s + +e+++     ++++++F +vG+ +  + l +  ng+++l  ++l l+++ ++++++vf++ +++      +++ +e++++ ++gl rg +a+al+  ++s    +   +            ++ +l+ +vv+lt+lv+  t +p+lk
  MMETSP0890-20130614|4559_1 379 MLIIGTltkqML---VryaptIPYPMVVMLWGAVINWFASI--ENDGqlnpmqmsirmwsNIDGHIVLYVWLPILLFGDVIKLNFHTMVQTFWQACMLAGPGVLLSTILTGLVVQY--LYLDWSWSFSLAIGSLLSATDPIAVLTLM-KELGAPKGLTYQISGESLFNDGTSVILFTVFFDMSRHRRGQYASVArliriITRMIFFSPCLGILVGAIAVYWMKKASRRHSKTDALVQLSVLLVAAYLGFFLSDnskIGQASGILTTVACAAVISfRAWPFI-VSREaIENVWAtaeHVLITMIFSVVGILMSRAKLSQnvNGRDVLNCIILYLAVF-AIRAVVVFVCRPFMncmgphKVTNKESVFLIWGGL-RGVIAIALVLFVKSVqsgS---NrtwphdrdqqaeQITFLVGGVVFLTLLVNAPTARPMLK 798
                 333333222232...233367*****************888..555578888899999999******************************************************7..47899************************.56666******************************66677777777333434444555555555555555555555555555999999999999999999999863325699**************8777777.66666*****9999****************999988988888777777777777.9******************99**************.**************95550...3455555666664889*********************98 PP

>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.46   3.1e+03     236     249 ..       9      22 ..       6      27 .. 0.81
   2 !   37.0   0.0   2.4e-13   1.6e-09      24     121 ..     108     221 ..      88     270 .. 0.77
   3 !   37.7   0.1   1.4e-13   9.3e-10     178     226 ..     307     357 ..     301     367 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.46
                 B--------B--TT CS
  PF00194.16 236 elvdnyRplqpLkd 249
                 ++ +n+R lqp+ d
  MMETSP0890-20130614|4559_1   9 PMWNNFRELQPIGD 22 
                 799********976 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 2.4e-13
                 -S-BEE-G.GGSEE-TTSGSSEEEETCGGEE..EEEE----EEEEE.....-SSSSSSE.......EE----S.S-EEEEEEEEE----TT----SEETTB--SEEEEEEEEET CS
  PF00194.16  24 qsPinikt.keakydpsLkplslsydeatak..eivnnGhsvqvel.....ddssdksv.......lsggple.asyrlkqlhfHWgsseekGsEHtvdgkkyaaElHlvHwns 121
                  sPi+i+  ++++ ++   +l++ + +   +   + n+Ghs+qv++     dd +   +       ++g++   ++y l+q+hfH+g+ e+kGsEH + g    aE+H+v  n+
  MMETSP0890-20130614|4559_1 108 ESPIQINPfETVQLEEGQVDLQVHGFDIRRTrpFVSNTGHSIQVTIcgqnvDDCDAVVTasdwpckVHGANCGnDTYTLHQFHFHFGEDETKGSEHQMCGSPRMAEMHMVLLNK 221
                 489999861556677778889998877776657899*******976332224433322211111115566665367**********************************9984 PP

  == domain 3    score: 37.7 bits;  conditional E-value: 1.4e-13
                 GGGS-S..S--EEEE----SSTT--S--EEEEESS-EE--HHHHHHHTTSB CS
  PF00194.16 178 stllPk..lrdywtYeGslttPpleEsvtWivlkepikvsseqllklrsll 226
                 ++llP+    +y+tY+G lttPp++   tW+++++++  s +ql++lr+ +
  MMETSP0890-20130614|4559_1 307 DKLLPAewNTKYYTYAGGLTTPPCSQIATWFIFENAVVWSMDQLKQLRKAT 357
                 689**988899*************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.59u 0.35s 00:00:01.94 Elapsed: 00:00:01.13
# Mc/sec: 2514.07
//
Query:       MMETSP0890-20130614|4571_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-43  147.9   0.1    2.5e-43  147.7   0.1    1.0  1  PF03665.8  Uncharacterised protein family (UPF0172)
  ------ inclusion threshold ------
      0.057   13.0   0.0      0.093   12.3   0.0    1.3  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> PF03665.8  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.1   3.7e-47   2.5e-43       7     195 ..       2     177 ..       1     178 [. 0.94

  Alignments for each domain:
  == domain 1    score: 147.7 bits;  conditional E-value: 3.7e-47
   PF03665.8   7 seeAYaKllLHaakypaqaVnGlLvgkskksssevlitDavPLfHstlalapmlevAlaqvesyaktkglsivGyYqanerlkdsslspvakkiadkiaenfsdallllvdnekltsdpkakaitvlekeakkesrwkskdkakealeseeeakeivselldakayeelvDfddhLddiskdwlnqeln 195
                 se+AY+K+++Haakypa a+ G+ vg+s+++s  ++i D+vPLfH   +l pmle A+ +ve++ak+++  ivGyY ane+++d+s+ + a  +++ +a++ ++++ll ++n+kl  ++++  +  +    k++++w++++   ++++ ++ a +++ e++d+    ++vDfd hL d+s+dw n ++n
  MMETSP0890-20130614|4571_1   2 SETAYTKMMMHAAKYPAYAIDGFCVGRSSAES--IIIDDVVPLFH-NGTLVPMLEAATCMVEKHAKKNEALIVGYYFANEHIDDESPGR-APSVGNTLAASGAQVCLLQISNSKLADPEENALRV-YF---KDGNHWNKSQ---QIVDVDPPATNLFLEAIDQG--LNIVDFDLHLHDVSNDWRNLHIN 177
                 899**************************999..8**********.899************************************9987.788***********************999998875.55...47999*9999...99999999999999999987..69*****************9987 PP

>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05     0.093       9      93 ..       2      80 ..       1      82 [. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
  PF01398.16  9 eslvllkildhalrtekeevmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklr..grervVGWYhshphi 93
                +  ++ k++ ha +     + G+++G+ + + ++ i +v+ l +++t     + +         +++k++  ++  +VG+Y    hi
  MMETSP0890-20130614|4571_1  2 SETAYTKMMMHAAKYPAYAIDGFCVGRSSAE-SIIIDDVVPLFHNGTLVPMLEAAT-------CMVEKHAkkNEALIVGYYFANEHI 80
                5678999************************.999*************99433333.......344444321348899999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.92
# Mc/sec: 481.88
//
Query:       MMETSP0890-20130614|4567_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-33  115.9   0.0    1.9e-33  115.3   0.0    1.3  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.1e-05   25.7   0.3    7.2e-05   23.1   0.0    2.3  3  PF13191.1  AAA ATPase domain
    2.9e-05   24.0   0.1    0.00062   19.7   0.0    2.7  1  PF13401.1  AAA domain
    3.9e-05   23.2   0.0    0.00051   19.6   0.0    2.5  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00017   21.4   0.0    0.00077   19.2   0.0    2.0  2  PF13671.1  AAA domain
    0.00028   20.4   0.2    0.00099   18.6   0.0    2.0  2  PF13245.1  Part of AAA domain
    0.00029   20.2   0.0    0.00046   19.5   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
    0.00037   19.4   0.0    0.00064   18.7   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0012   19.4   0.0     0.0032   18.1   0.0    1.8  1  PF13207.1  AAA domain
     0.0033   17.1   0.0     0.0061   16.3   0.0    1.4  1  PF13173.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.1   0.0       0.36   10.3   0.0    2.2  2  PF05729.7  NACHT domain
      0.012   14.7   0.1      0.023   13.7   0.1    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.014   13.9   0.0      0.021   13.4   0.0    1.2  1  PF06068.8  TIP49 C-terminus
      0.019   14.7   0.0      0.038   13.8   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
      0.023   14.5   0.1      0.064   13.0   0.0    1.8  2  PF13521.1  AAA domain
      0.026   14.5   0.0      0.054   13.5   0.0    1.5  1  PF00910.17 RNA helicase
      0.028   14.6   0.0      0.058   13.5   0.0    1.6  1  PF13238.1  AAA domain
      0.045   13.2   0.0      0.078   12.4   0.0    1.3  1  PF13479.1  AAA domain
      0.055   12.4   0.0       0.12   11.3   0.0    1.5  1  PF06414.7  Zeta toxin
      0.059   12.6   0.2       0.23   10.7   0.1    1.9  2  PF13481.1  AAA domain
      0.062   12.4   0.0        0.1   11.7   0.0    1.3  1  PF02562.11 PhoH-like protein
      0.073   11.8   0.0       0.12   11.1   0.0    1.2  1  PF01057.12 Parvovirus non-structural protein NS1
      0.074   12.4   0.0       0.21   10.9   0.0    1.7  1  PF00158.21 Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   3.2e-36   1.9e-33       1     131 [.     134     264 ..     134     265 .. 0.96

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 3.2e-36
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT..S.TEEEEEE-SSGGGS-HHHHHTTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk..eskvivigatnrpdkldpallrgRfdrkieie 131
                 +llyGppGtGKTlla+ava+++g+ +l++ +s+l +ky ge++k ++++f+ a + a p+ +f+DE+d + ++rs+++ +++    ++ +t+ldg+ ++  ++ viv++atnrp +ldpa+l +R+ r+++i+
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSGAAMLNVRASTLSDKYYGETNKLVAAMFSLATKLA-PCLIFLDEVDGILSARSSRDADVTLACKSEVMTHLDGLISEpkSRGVIVLAATNRPYDLDPAIL-RRLGRQFHIG 264
                 69******************************************************9.****************9999****************9988877677******************.7****99987 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.2e-07   7.2e-05      21      53 ..     128     156 ..      99     190 .. 0.79
   2 ?   -0.8   0.0       2.5   1.5e+03     117     145 ..     178     206 ..     157     240 .. 0.72
   3 ?   -1.6   0.0       4.5   2.7e+03      75      92 ..     305     322 ..     236     377 .. 0.60

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.2e-07
   PF13191.1  21 egsp.lllvtGpsGiGKSsLlrelakpillerlr 53 
                  + p  +l++Gp+G+GK+ L+r+     ++++  
  MMETSP0890-20130614|4567_1 128 VRPPrGILLYGPPGTGKTLLARA-----VAHDSG 156
                 333449*****************.....555544 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.5
   PF13191.1 117 lvalldaalartrrpklvlvlDD..lqwadr 145
                 lva++  ++++ +  +++++lD+     + r
  MMETSP0890-20130614|4567_1 178 LVAAMFSLATKLA--PCLIFLDEvdGILSAR 206
                 5555555566666..6999999633433333 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 4.5
   PF13191.1  75 lrellrqlltelaaelgg 92 
                 l+el+r  +t+ ++e ++
  MMETSP0890-20130614|4567_1 305 LEELCRTAATRGVTEYAR 322
                 444444444444444433 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     1e-06   0.00062       6      28 ..     133     155 ..     128     245 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1e-06
   PF13401.1   6 ilvvtGesGvGKTtllrrlarql 28 
                  ++++G++G+GKT+l+r +a++ 
  MMETSP0890-20130614|4567_1 133 GILLYGPPGTGKTLLARAVAHDS 155
                 589*****************964 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   8.6e-07   0.00051       2     138 ..     134     256 ..     133     257 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 8.6e-07
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------.G-SEEEEESGGG--..-HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHHHTT CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar.egeilvlDEverae..sevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspalrsR 138
                 +lL GppGtgK+ la+ +a+  +    + + +++t +++  g+++      +lv + +  a +  ++ ++lDEv+ +   ++  ++  +l  + ++    +++l+++++    ++++ v+a++n+++    +l+pa+++R
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSG--AAMLNVRASTLSDKYYGETN------KLVAAMFSLATKlAPCLIFLDEVDGILsaRSSRDADVTLACKSEVM-THLDGLISEPK----SRGVIVLAATNRPY----DLDPAILRR 256
                 89***************999655..45566677777777777777......4555555555558899999999997763233333333443333333.57788887776....46899999999998....888888888 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.3   1.4e+03      53      79 ..      33      63 ..      19      88 .. 0.78
   2 !   19.2   0.0   1.3e-06   0.00077       2      42 ..     134     176 ..     134     240 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.3
   PF13671.1 53 krlyqilnklarkalsagrsvivdat....n 79
                 r+ q l ++++k++  gr ++ da+    n
  MMETSP0890-20130614|4567_1 33 WRVSQGLVDFIEKNANIGRGYVPDACakwlN 63
                5678889999999999999999999855552 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.3e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdq 42 
                 +ll G+pG+GK+ la++++ + g  +  +++ tl+++ +g+  
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSGaaMLNVRASTLSDKYYGETN 176
                 6899******************987788999999999998543 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-06   0.00099       8      33 ..     129     153 ..     122     164 .. 0.81
   2 ?   -3.0   0.0       9.7   5.8e+03      42      53 ..     234     245 ..     229     247 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-06
   PF13245.1   8 a.gnpllvvtGgPGtGKTttlaaiiaa 33 
                 + ++++l+  G+PGtGKT +la+++a+
  MMETSP0890-20130614|4567_1 129 RpPRGILL-YGPPGTGKT-LLARAVAH 153
                 35556655.*********.99999987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 9.7
   PF13245.1  42 grsvllvaptgr 53 
                  r+v ++a t+r
  MMETSP0890-20130614|4567_1 234 SRGVIVLAATNR 245
                 577999999987 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.7e-07   0.00046      45      79 ..     129     163 ..     120     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.7e-07
  PF01695.12  45 eqaenlvllGpsGvGKthlAialgveavraglsvl 79 
                 +  + ++l Gp+G+GKt lA a+++    a l+v+
  MMETSP0890-20130614|4567_1 129 RPPRGILLYGPPGTGKTLLARAVAHDSGAAMLNVR 163
                 556789******************98766666665 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.1e-06   0.00064      53     111 ..     134     200 ..     128     207 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.1e-06
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvle.....kagdlaalltnleek...dvlfideih 111
                 +llyGpPG Gkt la+ +a++ g+++    + +l+      ++ l+a + +l++k    ++f+de+ 
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSGAAMLNVRASTLSdkyygETNKLVAAMFSLATKlapCLIFLDEVD 200
                 8*******************98887655555444311111456777777776655222467888875 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.4e-06    0.0032       2      40 ..     134     168 ..     134     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.4e-06
                 E--B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS- CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlslddllreeglk 40 
                 i+++GppG+GK+ la+++a   g  +l+  +     +l 
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSGAAMLNVRA----STLS 168
                 899***************9877888776665....3333 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-05    0.0061       5      73 ..     134     202 ..     131     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1e-05
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe.llelfleklke.kkkylflDEiqev 73 
                 ++++Gp ++GKt l++ +a++      +l +   + +++ + +++ l  ++++++++    ++flDE+  +
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSG--AAMLNVRASTLSDKYYGETNkLVAAMFSLATKlAPCLIFLDEVDGI 202
                 789****************9999..6677776666666555554444455555544447889*****9876 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0006      0.36       3      23 ..     134     154 ..     132     167 .. 0.87
   2 ?    2.6   0.0      0.13        80      74     127 ..     183     242 ..     162     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0006
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 ++l G++G GKT L++ +a++
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHD 154
                 799*************99986 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.13
   PF05729.7  74 ivllelperlLlilDglDelvsdlgq......lkekqpvrtlLselirkkllpeaslllt 127
                   l++     L++lD +D + s  +       l+ k++v t L +li++   +++ +l++
  MMETSP0890-20130614|4567_1 183 FSLATKLAPCLIFLDEVDGILSARSSrdadvtLACKSEVMTHLDGLISEPKSRGVIVLAA 242
                 444555556789999999999988889999999999***********9955555554443 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.9e-05     0.023      25      42 ..     134     151 ..     131     161 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.9e-05
  PF01078.16  25 lllvGppGsGKtmlakrl 42 
                 +ll+GppG+GKt+la+++
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAV 151
                 89*************987 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.021      51      95 ..     132     177 ..     126     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfva.lsgsevyslevkk 95 
                 r++Ll GppgtGkt la a++++ g+ +  v   + s+ y  e +k
  MMETSP0890-20130614|4567_1 132 RGILLYGPPGTGKTLLARAVAHDSGAAMLNVRaSTLSDKYYGETNK 177
                 89********************999665444303345666666655 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.3e-05     0.038       6      90 ..     134     213 ..     129     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.3e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----.------- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadv 90 
                 ill gp g+Gkt+la+a+a    +    ++  + as+l    +     ++l  a      +     ++lDE+d i +  +s  adv
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSGA----AMLNVRASTLSD--KYYGETNKLVAAMFSLATKLAPCLIFLDEVDGILSArSSRDADV 213
                 8999***************98885....999999999998..55556666666666666777777**********99777777777 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011     0.064       2      24 ..     134     157 ..     133     186 .. 0.80
   2 ?   -2.4   0.0       6.2   3.7e+03      24      43 ..     314     333 ..     305     377 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00011
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gy 24 
                 i + G+p+tGKT l++a+a   g 
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDsGA 157
                 7899**************976444 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 6.2
   PF13521.1  24 ypvvpEvarevleeklakge 43 
                 ++ v+E+ar + +++++++ 
  MMETSP0890-20130614|4567_1 314 TRGVTEYARLLASNNSKDQL 333
                 55566777766666655444 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.1e-05     0.054       1      26 [.     134     159 ..     134     184 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.1e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 i+lyGp+g+GK++la+ +a++   ++
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDSGAAM 159
                 789**************999877666 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.7e-05     0.058       1      21 [.     134     154 ..     134     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.7e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaer 21 
                 Il+ G+pG+GKt la++ a  
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHD 154
                 89**************99755 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.078       6      22 ..     134     150 ..     132     170 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00013
   PF13479.1   6 vliYGkpGiGKTslakt 22 
                 +l+YG+pG+GKT la+ 
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARA 150
                 689**********9976 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.12      15      48 ..     130     162 ..     121     177 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0002
   PF06414.7  15 kpkavllgGqpGAGKtslaellleelaagnivri 48 
                  p+ +ll G+pG GKt la+++  +  +  ++++
  MMETSP0890-20130614|4567_1 130 PPRGILLYGPPGTGKTLLARAVAHDS-GAAMLNV 162
                 5899******************9998.6666665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00038      0.23      36      54 ..     134     152 ..     108     158 .. 0.82
   2 ?   -1.6   0.0       2.2   1.3e+03     128     165 ..     177     213 ..     161     232 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00038
   PF13481.1  36 tllaGapgtGKStlalqla 54 
                 +ll+G+pgtGK+ la + a
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVA 152
                 89************97666 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.2
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsdv 165
                   ++++  ++ +l  p l+ +D ++ ++++ +  ++dv
  MMETSP0890-20130614|4567_1 177 KLVAAMFSLATKLA-PCLIFLDEVDGILSARSSRDADV 213
                 45667777778864.99999999999999877666664 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017       0.1      22      43 ..     134     155 ..     121     209 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00017
  PF02562.11  22 vfaiGpaGtGKTylavalavea 43 
                 +++ Gp GtGKT+la a+a + 
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHDS 155
                 5689*************99765 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.12     117     137 ..     134     154 ..     124     164 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0002
  PF01057.12 117 vwfyGpantGktnlaeaIaka 137
                 +++yGp+ tGkt la+a a+ 
  MMETSP0890-20130614|4567_1 134 ILLYGPPGTGKTLLARAVAHD 154
                 89****************986 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00035      0.21      22      46 ..     131     155 ..     121     171 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00035
                 -S-EEEE-------HHHHHHHHHTS CS
  PF00158.21  22 dltvlitGesGtGKellAraiheas 46 
                 +  +l+ G  GtGK+llAra+ + s
  MMETSP0890-20130614|4567_1 131 PRGILLYGPPGTGKTLLARAVAHDS 155
                 5679***************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:01.20
# Mc/sec: 852.70
//
Query:       MMETSP0890-20130614|4570_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   13.0   0.0       0.08   12.5   0.0    1.3  1  PF04389.12 Peptidase family M28


Domain annotation for each model (and alignments):
>> PF04389.12  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.8e-06      0.08      36      70 ..      61      96 ..      48     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.8e-06
                HHHHHH.TT---SCEEEEEEESSTT------HHHHH CS
  PF04389.12 36 arvlaa.qgsepkrgvrflffdgEEdgllGSralae 70
                  +l++ ++s+ k+++r+++  +EE g  GS+ l++
  MMETSP0890-20130614|4570_1 61 TAALKRaTQSRDKEELRIALSAAEEAGFSGSDPLIQ 96
                55677756666699******************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       861  (0.0629754); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 671.84
//
Query:       MMETSP0890-20130614|4574_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   16.8   0.4         16    4.9   0.0    3.1  3  PF14429.1  C2 domain in Dock180 and Zizimin proteins
  ------ inclusion threshold ------
       0.03   14.0   7.8        3.2    7.6   0.2    3.4  3  PF02491.15 SHS2 domain inserted in FTSA
       0.13   11.7  14.6       0.92    8.9   0.4    3.3  3  PF11306.3  Protein of unknown function (DUF3108)
       0.25   10.5   2.9        7.2    5.8   0.0    3.2  3  PF03886.8  Protein of unknown function (DUF330)
       0.41   10.6   3.6         33    4.4   0.0    3.0  3  PF09281.5  Taq polymerase, exonuclease
       0.47   10.3  17.3        2.3    8.1   1.0    4.4  5  PF02494.11 HYR domain
        1.3    9.1  16.3        4.1    7.5   0.6    4.9  5  PF00028.12 Cadherin domain
        4.5    7.0  17.3       0.89    9.3   1.2    3.3  3  PF04076.8  Bacterial OB fold (BOF) protein
        6.9    6.3   8.3        5.9    6.6   0.2    2.9  3  PF14014.1  Protein of unknown function (DUF4230)


Domain annotation for each model (and alignments):
>> PF14429.1  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        16      23      50 ..      51      81 ..      35      91 .. 0.75
   2 ?    4.2   0.0     0.017        25      20      50 ..     138     170 ..     125     181 .. 0.78
   3 ?    4.4   0.0     0.014        22      24      48 ..     231     257 ..     214     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.011
   PF14429.1 23 k.karnivvtvelrdsdgss..kalkliysr 50
                  +++++ vtv++ d+d++    +l +i s 
  MMETSP0890-20130614|4574_1 51 DiTQQDVSVTVSVLDNDSDPngDPLTVISST 81
                24799************99988788777665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.017
   PF14429.1  20 kekkkarnivvtvelrdsdgss..kalkliysr 50 
                 +++++++++ vt+++ d+d++    al +i s 
  MMETSP0890-20130614|4574_1 138 DSQSTQEDVSVTISVLDNDSDPngDALTVISST 170
                 4444799************99877777777654 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.014
   PF14429.1  24 karnivvtvelrdsdgss..kalkliy 48 
                 ++++i vtv++ d+d++    +l ++ 
  MMETSP0890-20130614|4574_1 231 TQQDISVTVSVLDNDSDPdgDPLTVVS 257
                 799************998655555554 PP

>> PF02491.15  SHS2 domain inserted in FTSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0021       3.2       6      39 ..      37      70 ..      32      81 .. 0.78
   2 ?    2.3   0.2     0.091   1.4e+02       7      41 ..     127     161 ..     122     168 .. 0.82
   3 ?    7.4   0.1    0.0023       3.5       7      35 ..     216     244 ..     210     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0021
  PF02491.15  6 ssvnskgivaiedrevteedvervleaakakaip 39
                 + n+++iva +d+ +t++dv+  ++     ++p
  MMETSP0890-20130614|4574_1 37 VTINVNVIVAVDDSDITQQDVSVTVSVLDNDSDP 70
                57899****************9776665555555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.091
  PF02491.15   7 svnskgivaiedrevteedvervleaakakaiped 41 
                 +  ++giva +d++ t+edv+  ++     ++p++
  MMETSP0890-20130614|4574_1 127 TIVVNGIVAVDDSQSTQEDVSVTISVLDNDSDPNG 161
                 56789***************988887777776665 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0023
  PF02491.15   7 svnskgivaiedrevteedvervleaaka 35 
                 + +++giva +d+ +t++d++  ++    
  MMETSP0890-20130614|4574_1 216 TIDVNGIVAVDDSDITQQDISVTVSVLDN 244
                 67899***************866655554 PP

>> PF11306.3  Protein of unknown function (DUF3108)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.7    0.0082        12      24      44 ..      20      46 ..      15      97 .. 0.76
   2 ?    5.5   0.6     0.007        11      21      56 ..     106     147 ..      97     158 .. 0.68
   3 ?    8.9   0.4   0.00061      0.92       7      44 ..     167     223 ..     161     248 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0082
   PF11306.3 24 eleYrvyygglkagtatvsv......e 44
                ++eY++++g++ ++tatv++       
  MMETSP0890-20130614|4574_1 20 TFEYTISDGNGGTATATVTInvnvivA 46
                789*****9998888888875566641 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.007
   PF11306.3  21 egeeleYrvyygglkagtatvsv......ektgd.gtyrisvt 56 
                    ++eY++++g++ + tatv++       +  d +  + +v+
  MMETSP0890-20130614|4574_1 106 GTDTFEYTISDGKGGTDTATVTIvvngivAVD-DsQSTQEDVS 147
                 56799******999888999999545553222.2355555555 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00061
   PF11306.3   7 aaaaaaaqadp..............plpegeeleYrvyygglkagtatvsv.....e 44 
                  +++  a++d+               ++   ++eY++++g++ ++tatv++     +
  MMETSP0890-20130614|4574_1 167 ISSTDPANGDAiinvdgtitytpdsGFTGTDTFEYTISDGNGGTATATVTIdvngiV 223
                 4555555555566777777777777788899********999888888887435441 PP

>> PF03886.8  Protein of unknown function (DUF330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.084   1.3e+02      80     107 ..      45      72 ..      26      79 .. 0.80
   2 ?    5.8   0.0    0.0047       7.2      80     111 ..     134     165 ..     129     180 .. 0.84
   3 ?    1.6   0.0     0.096   1.5e+02      80     108 ..     223     251 ..     204     258 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.084
   PF03886.8  80 vaepaplagtpdyrlevdvqrFesdpgg 107
                 va ++++ +++d++++v+v + +sdp+g
  MMETSP0890-20130614|4574_1  45 VAVDDSDITQQDVSVTVSVLDNDSDPNG 72 
                 4455556889999999999999999887 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0047
   PF03886.8  80 vaepaplagtpdyrlevdvqrFesdpggtavl 111
                 va ++++++++d++++++v + +sdp+g a+ 
  MMETSP0890-20130614|4574_1 134 VAVDDSQSTQEDVSVTISVLDNDSDPNGDALT 165
                 44455679********************9986 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.096
   PF03886.8  80 vaepaplagtpdyrlevdvqrFesdpggt 108
                 va ++++ +++d +++v+v + +sdp+g 
  MMETSP0890-20130614|4574_1 223 VAVDDSDITQQDISVTVSVLDNDSDPDGD 251
                 44444568999999999999999999985 PP

>> PF09281.5  Taq polymerase, exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022        33      69     103 ..      53      87 ..      30      97 .. 0.88
   2 ?    1.2   0.1      0.22   3.4e+02      71     103 ..     144     176 ..     133     185 .. 0.88
   3 ?    4.4   0.1     0.022        33      69     102 ..     231     264 ..     208     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.022
   PF09281.5  69 lakaLavllsvrGvvvePgDDPlLvayLLDPantn 103
                 + ++++v +sv   + +P  DPl v    DP+n  
  MMETSP0890-20130614|4574_1  53 TQQDVSVTVSVLDNDSDPNGDPLTVISSTDPTNGV 87 
                 5678999999999******************9975 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.22
   PF09281.5  71 kaLavllsvrGvvvePgDDPlLvayLLDPantn 103
                  +++v +sv   + +P  D l v    DPan +
  MMETSP0890-20130614|4574_1 144 EDVSVTISVLDNDSDPNGDALTVISSTDPANGD 176
                 57888999999999*****************75 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.022
   PF09281.5  69 lakaLavllsvrGvvvePgDDPlLvayLLDPant 102
                 + ++++v +sv   + +P  DPl v    DP+n 
  MMETSP0890-20130614|4574_1 231 TQQDISVTVSVLDNDSDPDGDPLTVVSSTDPTNG 264
                 567899999**********************996 PP

>> PF02494.11  HYR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0023       3.5      57      81 .]      17      41 ..       7      41 .. 0.90
   2 ?   -1.6   0.0       1.6   2.5e+03      41      64 ..      75      99 ..      60     102 .. 0.66
   3 ?    3.2   0.8     0.051        77      56      81 .]     105     130 ..      71     130 .. 0.86
   4 ?   -1.9   0.0       2.1   3.1e+03      27      56 ..     136     166 ..     133     171 .. 0.61
   5 ?    8.1   1.0    0.0015       2.3      48      81 .]     187     219 ..     161     219 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
  PF02494.11 57 GettVtYtatDnagNeasCkftvtv 81
                G  t +Yt++D +g +a++++t++v
  MMETSP0890-20130614|4574_1 17 GIDTFEYTISDGNGGTATATVTINV 41
                778889*****************98 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.6
  PF02494.11 41 aelisrtaqpgdlfpv.GettVtYt 64
                 ++is+t +     ++ G+ t+tYt
  MMETSP0890-20130614|4574_1 75 LTVISSTDPTNGVVSInGDGTITYT 99
                4556666555555544168899997 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.051
  PF02494.11  56 vGettVtYtatDnagNeasCkftvtv 81 
                  G+ t +Yt++D  g ++++++t+ v
  MMETSP0890-20130614|4574_1 105 AGTDTFEYTISDGKGGTDTATVTIVV 130
                 589999****************9976 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 2.1
  PF02494.11  27 vffeeptasdnsg.qaelisrtaqpgdlfpv 56 
                 v +++ t +d+s    +l+  + ++gd ++v
  MMETSP0890-20130614|4574_1 136 VDDSQSTQEDVSVtISVLDNDSDPNGDALTV 166
                 5666667777776333445556666776665 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0015
  PF02494.11  48 aqpgdlfpvGettVtYtatDnagNeasCkftvtv 81 
                 + p + f +G+ t +Yt++D +g +a++++t+ v
  MMETSP0890-20130614|4574_1 187 YTPDSGF-TGTDTFEYTISDGNGGTATATVTIDV 219
                 4555555.5999*******************987 PP

>> PF00028.12  Cadherin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.32   4.8e+02      74      92 ..      26      41 ..      20      44 .. 0.55
   2 ?    7.5   0.6    0.0027       4.1      15      55 ..      58      98 ..      49     131 .. 0.84
   3 ?    6.2   0.8    0.0073        11      14      55 ..     146     187 ..     134     220 .. 0.76
   4 ?    1.2   0.3      0.26     4e+02      63      81 ..     231     248 ..     190     258 .. 0.58
   5 ?    0.7   0.1      0.37   5.6e+02      16      35 ..     237     256 ..     229     270 .. 0.56

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.32
                ECS-.-SEEEEEEEEEEEE CS
  PF00028.12 74 tDesgspplsstttvtvtV 92
                +D    ++ ++t+tvt++V
  MMETSP0890-20130614|4574_1 26 SDG---NGGTATATVTINV 41
                555...2445555555555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0027
                EEEECBCCSSCTTTT-EEEEEEEEES.S-BEEE-ST--EEEE CS
  PF00028.12 15 vltvtatdaDlgpnsrirysilegne.ggkFridtetgdlst 55
                 +tv++ d+D+ pn+ +   i+++++ +g  +i+  +g+++ 
  MMETSP0890-20130614|4574_1 58 SVTVSVLDNDSDPNGDPLTVISSTDPtNGVVSING-DGTITY 98
                5799*********************9999999998.666665 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0073
                 CEEEECBCCSSCTTTT-EEEEEEEEES.S-BEEE-ST--EEEE CS
  PF00028.12  14 evltvtatdaDlgpnsrirysilegne.ggkFridtetgdlst 55 
                   +t+++ d+D+ pn+ +   i+++++ +g   i+  +g+++ 
  MMETSP0890-20130614|4574_1 146 VSVTISVLDNDSDPNGDALTVISSTDPaNGDAIINV-DGTITY 187
                 45689999******************9666666655.777765 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.26
                 TSSEEEEEEEEECS-.-SE CS
  PF00028.12  63 sqgeYeLtveatDesgspp 81 
                 +q++ ++tv++ D++ s p
  MMETSP0890-20130614|4574_1 231 TQQDISVTVSVLDND-SDP 248
                 235555666666663.444 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.37
                 EEECBCCSSCTTTT-EEEEE CS
  PF00028.12  16 ltvtatdaDlgpnsrirysi 35 
                 +tv++ d+D+ p + +   +
  MMETSP0890-20130614|4574_1 237 VTVSVLDNDSDPDGDPLTVV 256
                 45555555555555544444 PP

>> PF04076.8  Bacterial OB fold (BOF) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3    0.0098        15      12      67 ..      12      67 ..       4      83 .. 0.86
   2 ?    9.3   1.2   0.00058      0.89      12      69 ..     101     158 ..      89     170 .. 0.88
   3 ?    2.0   1.2      0.11   1.7e+02      12      63 ..     190     241 ..     180     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0098
   PF04076.8 12 qgGfqgpeakkttVkaAkeaaDdasvvleGnivkqidddeyvFrDasGeikvdidd 67
                + Gf g ++ + t++     +  a+v+++ n++  +dd   + +D s ++ v  +d
  MMETSP0890-20130614|4574_1 12 NAGFAGIDTFEYTISDGNGGTATATVTINVNVIVAVDDSDITQQDVSVTVSVLDND 67
                6799999999************************************9999885555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00058
   PF04076.8  12 qgGfqgpeakkttVkaAkeaaDdasvvleGnivkqidddeyvFrDasGeikvdiddkv 69 
                 + Gf g+++ + t++  k  +D a+v++  n +  +dd + +  D s +i v  +d++
  MMETSP0890-20130614|4574_1 101 DSGFAGTDTFEYTISDGKGGTDTATVTIVVNGIVAVDDSQSTQEDVSVTISVLDNDSD 158
                 68*********************************************99998655555 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.11
   PF04076.8  12 qgGfqgpeakkttVkaAkeaaDdasvvleGnivkqidddeyvFrDasGeikv 63 
                 + Gf+g+++ + t++     +  a+v++  n +  +dd   + +D s ++ v
  MMETSP0890-20130614|4574_1 190 DSGFTGTDTFEYTISDGNGGTATATVTIDVNGIVAVDDSDITQQDISVTVSV 241
                 6899****99999999999999999999999999999999999998888776 PP

>> PF14014.1  Protein of unknown function (DUF4230)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0039       5.9      17      64 ..       3      59 ..       1      78 [. 0.80
   2 ?    0.2   0.1      0.35   5.4e+02      16      64 ..      91     148 ..      85     166 .. 0.69
   3 ?    3.5   0.1     0.034        52      16      64 ..     180     237 ..     177     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0039
   PF14014.1 17 vekvvtsedekkllgs.........lplgekkaliiyrgtvkagiDlsklkeedvqv 64
                v+ ++t++ ++++ g             g+ +a+++++ +v + +D s+++++dv v
  MMETSP0890-20130614|4574_1  3 VDGTITYTPNAGFAGIdtfeytisdGNGGTATATVTINVNVIVAVDDSDITQQDVSV 59
                5566666666666666666666666678999**********************9988 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.35
   PF14014.1  16 nvekvvtsedekkllgs.........lplgekkaliiyrgtvkagiDlsklkeedvqv 64 
                 n + ++t++ + ++ g             g+++a++++  +  + +D s+ ++edv v
  MMETSP0890-20130614|4574_1  91 NGDGTITYTPDSGFAGTdtfeytisdGKGGTDTATVTIVVNGIVAVDDSQSTQEDVSV 148
                 5566666666666666666666666656666777777777777778888888787776 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.034
   PF14014.1  16 nvekvvtsedekkllgs.........lplgekkaliiyrgtvkagiDlsklkeedvqv 64 
                 nv+ ++t++ + +++g             g+ +a+++++ +  + +D s+++++d+ v
  MMETSP0890-20130614|4574_1 180 NVDGTITYTPDSGFTGTdtfeytisdGNGGTATATVTIDVNGIVAVDDSDITQQDISV 237
                 6777888888888888888888888888899999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.69
# Mc/sec: 941.18
//
Query:       MMETSP0890-20130614|4576_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-15   56.6   0.0    2.8e-15   56.2   0.0    1.1  1  PF01170.13 Putative RNA methylase family UPF0020
    5.2e-10   39.2   0.0    7.3e-10   38.8   0.0    1.1  1  PF13659.1  Methyltransferase domain
    8.9e-06   24.8   0.0    1.3e-05   24.3   0.0    1.2  1  PF02384.11 N-6 DNA Methylase
      1e-05   25.6   0.0    1.4e-05   25.2   0.0    1.2  1  PF13649.1  Methyltransferase domain
     0.0002   20.8   0.0    0.00026   20.4   0.0    1.2  1  PF13847.1  Methyltransferase domain
    0.00092   18.5   0.0     0.0011   18.3   0.0    1.1  1  PF05175.9  Methyltransferase small domain
     0.0037   16.3   0.0     0.0047   15.9   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.019   14.5   0.0    1.1  1  PF13489.1  Methyltransferase domain
      0.023   15.0   0.0      0.034   14.5   0.0    1.3  1  PF08241.7  Methyltransferase domain
      0.048   13.1   0.0      0.063   12.7   0.0    1.2  1  PF09445.5  RNA cap guanine-N2 methyltransferase
      0.065   12.1   0.1      0.077   11.8   0.1    1.1  1  PF11599.3  RRNA methyltransferase AviRa
       0.11   12.9   0.0       0.15   12.5   0.0    1.3  1  PF12847.2  Methyltransferase domain
       0.14   11.5   0.0       0.19   11.0   0.0    1.1  1  PF01555.13 DNA methylase


Domain annotation for each model (and alignments):
>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.7e-18   2.8e-15       9     117 ..      27     121 ..      22     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.7e-18
  PF01170.13   9 papLketLAaalvnlagvkegdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaaklellegevdvivtnpPYG 117
                  + L++++A+++ nla++ + ++++DP cGsGt+l  a l + +++           g D+ ++++ gak N+  ++  ++ ++ +    kl + e+++d ++ n+P+ 
  MMETSP0890-20130614|4576_1  27 SGGLNPEMARCMANLAQISPKHRVIDPCCGSGTLLYAASLYSHSLY-----------GYDLHANHLLGAKLNLPTYTKLQLADATCL---KLDQHEQKFDRMLLNLPWR 121
                 689********************************99999999888...........*******************99998888884...45556689*********95 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   6.9e-13   7.3e-10       2      83 ..      48     123 ..      47     135 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 6.9e-13
   PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpr 83 
                 +rv+dp+cGsGt+l+aa  +  + l+g +l ++ +  a+ nl+ +    +++++ +  ++l+    +++fd ++ n P+  +
  MMETSP0890-20130614|4576_1  48 HRVIDPCCGSGTLLYAASLYS-HSLYGYDLHANHLLGAKLNLPTYT---KLQLADATCLKLD--QHEQKFDRMLLNLPWRCH 123
                 79*************999998.*******************99873...5666677777777..5679**********9433 PP

>> PF02384.11  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.2e-08   1.3e-05      34     138 ..      34     123 ..      31     134 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.2e-08
  PF02384.11  34 vsklivellepkegesiyDpacGsggllvqaekfvkeedgktkelsiyGqelnettykLakmNlllhgieakklkirlgdtlesdkfeedkkfdvvvaNPPfnak 138
                 + + +++l++ ++++ + Dp+cGsg ll  a+ +         + s+yG +l+++    ak+Nl      + kl+ + +  l+ d++e  +kfd ++ N P+  +
  MMETSP0890-20130614|4576_1  34 MARCMANLAQISPKHRVIDPCCGSGTLLYAASLY---------SHSLYGYDLHANHLLGAKLNLP----TYTKLQLADATCLKLDQHE--QKFDRMLLNLPWRCH 123
                 6788999999999999************999886.........579*********9999****96....5777889999999999999..9***********876 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.4e-08   1.4e-05       1      74 [.      50     117 ..      50     135 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.4e-08
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvca 74 
                 ++d +CGsG+ ++a+  +     +++++g+D+ ++ l  ak +l   + k +   a + +l+++e++fd +++ 
  MMETSP0890-20130614|4576_1  50 VIDPCCGSGTLLYAASLY-----SHSLYGYDLHANHLLGAKLNL-PTYTKLQLADATCLKLDQHEQKFDRMLLN 117
                 6899******99999843.....49***********99888777.5555899999999***********99983 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.5e-07   0.00026       3      85 ..      46     123 ..      44     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.5e-07
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklleesfDlvisnevl.na 85 
                  + +v+D +CG+G+ll++++ + + +  ++G D  ++ +  Ak ++    +++++   +   +l+++ e++fD ++ n +  ++
  MMETSP0890-20130614|4576_1  46 PKHRVIDPCCGSGTLLYAAS-L-Y-SHSLYGYDLHANHLLGAKLNLP--TYTKLQLADATCLKLDQH-EQKFDRMLLNLPWrCH 123
                 5779****************.4.2.456****************744..666666666666666654.699****999765544 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     1e-06    0.0011      23     114 ..      38     126 ..      23     136 .] 0.72

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1e-06
                 HHHHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--..--BS-EEE--------HH CS
   PF05175.9  23 LletlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeve.ekkfdlivsNPPfhagkat 114
                 +++  +  ++++v+D +cG G l  a++  s +  +  +D +a+ +  ak nl +     +++    +l+  + e+kfd ++ N P + ++ +
  MMETSP0890-20130614|4576_1  38 MANLAQISPKHRVIDPCCGSGTLLYAASLYSHS--LYGYDLHANHLLGAKLNLPTYTK--LQLADATCLKLDQhEQKFDRMLLNLPWRCHVSE 126
                 444444458999***********8887777766..99******999999999987653..4455544444333259**********8776643 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.4e-06    0.0047     149     229 ..      35     114 ..      24     118 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.4e-06
   PF06325.8 149 klclealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelN.kveaklevallkelpkekadvi 229
                 + c+  l + + ++++v+D  +GSG L  aa+ L  ++ +++D+    +  ak N+    k++    + l+ ++ ++k+d +
  MMETSP0890-20130614|4576_1  35 ARCMANLAQ-ISPKHRVIDPCCGSGTLLYAAS-LYSHSLYGYDLHANHLLGAKLNLPTYtKLQLADATCLKLDQHEQKFDRM 114
                 567777765.568899***********88776.667899*******999999999865513333333456677777777765 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.8e-05     0.019       9      60 ..      34      99 ..      28     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.8e-05
   PF13489.1  9 ladllerllarlkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.................a 60
                +a+  ++l++   p+ rv+D  cG+G ll   + + ++++g+D+  +a +                  a
  MMETSP0890-20130614|4576_1 34 MARCMANLAQ-ISPKHRVIDPCCGSGTLLYAASLYSHSLYGYDL--HANHLlgaklnlptytklqladA 99
                6666677775.67899*************999************..33333556666665555555551 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.2e-05     0.034       2      68 ..      52     118 ..      51     134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.2e-05
   PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeelpfe..dnsfDvvvsse 68 
                 d  cG+g ll a + + +++++g Dl+++ l  ak +l+    +l+ ada+ l+++  +++fD  +++ 
  MMETSP0890-20130614|4576_1  52 DPCCGSGTLLYAASLY-SHSLYGYDLHANHLLGAKLNLPTY-TKLQLADATCLKLDqhEQKFDRMLLNL 118
                 6679999999998888.9************99999999986.458888877776553388999887765 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     6e-05     0.063       2      64 ..      48     107 ..      47     126 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6e-05
   PF09445.5   2 evvlDlfaGaGGnviqfanvfdkviaieinlsklklaqhNaevYgvsdkitlvlgdvfellak 64 
                 + v+D+++G+G    +  ++ ++ ++ +   ++l  a+ N   Y    k++l  + + +l ++
  MMETSP0890-20130614|4576_1  48 HRVIDPCCGSGTLLYAASLYSHSLYGYDLHANHLLGAKLNLPTY---TKLQLADATCLKLDQH 107
                 579***********9999999***********************...6666666666655444 PP

>> PF11599.3  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.4e-05     0.077      41     106 ..      35      97 ..      24     115 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.4e-05
                 HHHHHT------.EEEEETT-----HHHH---TTGGGEEEEEEEES-HHHHHHHHHHHHTTS----H CS
   PF11599.3  41 eralarlikdae.vslydpccGsayllsvlGllkrrslaqliasdvdseslelaadnlallskaGlt 106
                  r++a l + ++   + dpccGs+ ll    l  +     l++ d++++ l  a+ nl   +k  l+
  MMETSP0890-20130614|4576_1  35 ARCMANLAQISPkHRVIDPCCGSGTLLYAASLYSH----SLYGYDLHANHLLGAKLNLPTYTKLQLA 97 
                 57777777665514689*********998877643....5789999999888888888887776665 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014      0.15       2      77 ..      47     117 ..      46     135 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00014
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllk 77 
                   r++D +cG+G l l++a+l +   ++g+D++++ l  a+ n+      ++++l  + +  +l++ e+ fD +ll+
  MMETSP0890-20130614|4576_1  47 KHRVIDPCCGSGTL-LYAASL-YSHSLYGYDLHANHLLGAKLNL---PTYTKLQLADATC-LKLDQHEQkFDRMLLN 117
                 5689********99.666664.8889*******99999999888...2345555555555.5555555458888775 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.19     193     225 ..      48      80 ..      33      85 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00018
                 -EEEETT-----HHHHHHH---EEEEEESSTTH CS
  PF01555.13 193 divlDpFaGSGtTavaakelgrkfiGieieeey 225
                   v+Dp +GSGt + aa   +   +G++ + ++
  MMETSP0890-20130614|4576_1  48 HRVIDPCCGSGTLLYAASLYSHSLYGYDLHANH 80 
                 569*************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 428.82
//
Query:       MMETSP0890-20130614|4594_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   65.4   2.6    5.4e-12   45.0   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
    9.9e-05   20.5   3.2      0.067   11.2   0.4    2.0  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   2.5e-08   0.00017      18      39 .]       1      22 [.       1      22 [. 0.97
   2 !   45.0   0.1   7.9e-16   5.4e-12       2      39 .]      27      64 ..      26      64 .. 0.96

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-08
                EEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 18 afspdgpllasgSrDgtirlWd 39
                +fs dg++ +++S+D+t ++Wd
  MMETSP0890-20130614|4594_1  1 KFSKDGRRAVTASDDHTAKIWD 22
                69*******************9 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 7.9e-16
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++ tlrgHt++ ++++fs dg++++++S D+t r+W+
  MMETSP0890-20130614|4594_1 27 TLLLTLRGHTDWLNACDFSFDGTRVITASNDRTARVWN 64
                7889*********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.4   9.8e-06     0.067     234     259 ..       9      34 ..       4      46 .. 0.75
   2 !   10.9   0.2   1.2e-05     0.085     224     253 ..      45      70 .]      36      70 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.8e-06
   PF11715.3 234 vftlsrDgkLRvWnletgqclrttdi 259
                 ++t s D++ ++W++ tg++l t   
  MMETSP0890-20130614|4594_1   9 AVTASDDHTAKIWDTLTGTLLLTLRG 34 
                 4699****************555443 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.2e-05
   PF11715.3 224 sssevegqtfvftlsrDgkLRvWnletgqc 253
                 s+    + t v+t s D++ RvWn e+g++
  MMETSP0890-20130614|4594_1  45 SF----DGTRVITASNDRTARVWNAENGTL 70 
                 44....445677***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 262.10
//
Query:       MMETSP0890-20130614|4595_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   16.2   0.4     0.0094   15.8   0.2    1.1  1  PF12173.3  Bacteriocin class IIc cyclic gassericin A-like
  ------ inclusion threshold ------
      0.011   15.1   0.0       0.92    9.0   0.0    2.3  2  PF07671.6  Protein of unknown function (DUF1601)
       0.05   13.2   0.0        0.3   10.7   0.0    1.9  2  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF12173.3  Bacteriocin class IIc cyclic gassericin A-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   2.1e-06    0.0094      25      86 ..       5      67 ..       2      70 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-06
   PF12173.3 25 valllataniyfiadklGiqlatatarklldavasGaslgtafaiilGvtlPawila.aaaal 86
                va +    n y   d+  + lata  + + d+ a G +  +   + +G+ +Pa   a aaaal
  MMETSP0890-20130614|4595_1  5 VAKIGGKNNSYLQEDRRILSLATACRERVKDFEAQGLANVAWAVATIGIEVPALLNAiAAAAL 67
                6667778899999*******************999966555455678******9866245555 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0081        37      20      36 ..      28      44 ..      19      44 .. 0.85
   2 ?    9.0   0.0    0.0002      0.92      17      36 ..      58      81 ..      56      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0081
   PF07671.6 20 AIrrnaerFNpQsIANt 36
                A r ++  F +Q+ AN+
  MMETSP0890-20130614|4595_1 28 ACRERVKDFEAQGLANV 44
                66788999********6 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0002
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                Ll+AI+         F+pQ+ ANt
  MMETSP0890-20130614|4595_1 58 LLNAIAaaalTMLDGFKPQELANT 81
                888888888888899********9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.034   1.5e+02      24      60 ..      24      60 ..      17      62 .. 0.80
   2 ?   10.7   0.0   6.6e-05       0.3      20      49 ..      57      86 ..      53      87 .] 0.91

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.034
  PF06743.10 24 klasalereLdsispelllnlvwSlclleyfpvelln 60
                +la+a+ +  + ++ + l n+ w+ + ++   ++lln
  MMETSP0890-20130614|4595_1 24 SLATACRERVKDFEAQGLANVAWAVATIGIEVPALLN 60
                577788888899999999******9998776666666 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 6.6e-05
  PF06743.10 20 effeklasalereLdsispelllnlvwSlc 49
                ++++++a a  + Ld+++p++l n+ w+++
  MMETSP0890-20130614|4595_1 57 ALLNAIAAAALTMLDGFKPQELANTTWAFA 86
                6889999999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 311.17
//
Query:       MMETSP0890-20130614|4601_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-35  118.7   0.1    9.3e-35  118.4   0.1    1.1  1  PF11069.3 Protein of unknown function (DUF2870)


Domain annotation for each model (and alignments):
>> PF11069.3  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.1   6.8e-39   9.3e-35       1      97 [.      37     133 ..      37     135 .. 0.98

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 6.8e-39
   PF11069.3   1 eaqLwfagkelkrgkklsdyvGkNektkiivklqkkgegapsrepvideeaqkalmaemykrqeelkkleededdsylnsewadknsLkkqlhglee 97 
                 +aqLw agke++r  ++ + +G+Nektk+++klqk g+g+p+repv++e+++ka+ma+++krqeelk l e++dd+yl s+wa++++Lk+ l+gl++
  MMETSP0890-20130614|4601_1  37 TAQLWCAGKEFNRATTVGQRLGQNEKTKVVAKLQKPGAGPPAREPVVSENERKAMMAHYFKRQEELKALAEANDDDYLASSWANPKALKSSLQGLSD 133
                 59********************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.77
# Mc/sec: 445.04
//
Query:       MMETSP0890-20130614|4597_1  [L=1136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-13   48.4   0.0    1.4e-12   47.0   0.0    1.8  1  PF03439.8  Early transcription elongation factor of RNA pol II, NGN section
    7.6e-10   37.8  14.9      0.029   13.8   0.1    6.2  6  PF00467.24 KOW motif
     0.0097   16.4  15.1     0.0097   16.4  10.5    4.2  4  PF11942.3  Spt5 transcription elongation factor, acidic N-terminal


Domain annotation for each model (and alignments):
>> PF03439.8  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0     3e-16   1.4e-12       1      82 [.     194     277 ..     194     279 .. 0.94

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3e-16
   PF03439.8   1 kiwavkctagqErevaislmkkieelakken...leIySvfapdelkGyiyvEAdrkaaveralegiphvrgvvkglvpikEved 82 
                 ++w+v c+ gqE   +islm+k+  +a++++   l+I  ++++ +l G+iyvE++++ a ++a+ g+  ++++ +++vp+ ++  
  MMETSP0890-20130614|4597_1 194 RLWIVPCKTGQEMAACISLMNKAVYMARDKQgipLGISGALCT-GLRGFIYVESRTEPAARNAIAGLSLLKSFAIKQVPVTDMVA 277
                 58********************9999888889999*****997.7*************************************976 PP

>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.3e-05     0.061       2      25 ..     302     325 ..     301     334 .. 0.88
   2 ?   -0.4   0.3       0.2     9e+02       1      16 [.     517     532 ..     517     548 .. 0.74
   3 !   12.4   0.1   1.7e-05     0.079       1      21 [.     576     596 ..     576     597 .. 0.94
   4 ?   -0.6   0.0      0.23     1e+03      14      25 ..     651     662 ..     650     667 .. 0.86
   5 !   13.8   0.1   6.4e-06     0.029       2      29 ..     830     857 ..     829     859 .. 0.86
   6 !    3.8   0.0    0.0089        40       7      29 ..    1044    1061 ..    1043    1063 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.3e-05
                 TBEEEE-----TT-EEEEEEEETT CS
  PF00467.24   2 GdyVrvisGpfkGrpGkvvevdrs 25 
                 Gd+Vr  + ++kG  +++v v++ 
  MMETSP0890-20130614|4597_1 302 GDWVRLNRDKYKGDLARIVAVSDG 325
                 9********************986 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.2
                 TTBEEEE-----TT-E CS
  PF00467.24   1 kGdyVrvisGpfkGrp 16 
                 +Gd+V  i+G  +G +
  MMETSP0890-20130614|4597_1 517 RGDKVEAIAGDERGLK 532
                 69********999976 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 1.7e-05
                 TTBEEEE-----TT-EEEEEE CS
  PF00467.24   1 kGdyVrvisGpfkGrpGkvve 21 
                 +G +++v++G+++G +G v+e
  MMETSP0890-20130614|4597_1 576 VGAHIKVVDGRYAGTTGLVLE 596
                 799**************9987 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.23
                 T-EEEEEEEETT CS
  PF00467.24  14 GrpGkvvevdrs 25 
                 G +G+v++vdr+
  MMETSP0890-20130614|4597_1 651 GSVGVVTRVDRD 662
                 779*******97 PP

  == domain 5    score: 13.8 bits;  conditional E-value: 6.4e-06
                 TBEEEE-----TT-EEEEEEEETTTCEE CS
  PF00467.24   2 GdyVrvisGpfkGrpGkvvevdrskarV 29 
                 ++yV +i+G +kG  G+v++++    +V
  MMETSP0890-20130614|4597_1 830 NKYVSIIRGIYKGLSGVVTNITATHGTV 857
                 68******************98666555 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.0089
                  E-----TT-EEEEEEEETTTCEE CS
  PF00467.24    7 visGpfkGrpGkvvevdrskarV 29  
                  v     +Gr++++ +v++s + V
  MMETSP0890-20130614|4597_1 1044 V-----DGRTCRIDNVEDSMVSV 1061
                  5.....8***********99666 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   2.6         3   1.4e+04      19      25 ..       8      14 ..       2      33 .. 0.43
   2 ?    1.5  18.0     0.093   4.2e+02       4      51 ..      31      81 ..      25      87 .. 0.49
   3 !   16.4  10.5   2.1e-06    0.0097       1      73 [.      91     157 ..      91     175 .. 0.65
   4 !    7.4   3.0    0.0013       6.1       6      53 ..     437     481 ..     433     489 .. 0.54

  Alignments for each domain:
  == domain 1    score: -5.0 bits;  conditional E-value: 3
   PF11942.3 19 edeeeel 25
                e+ee+e 
  MMETSP0890-20130614|4597_1  8 EEEEDEV 14
                2222222 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.093
   PF11942.3  4 tEAevddeeeEeeeeedeeeelseeaefieea.......eddrrhreldrrreke 51
                +E+e+d e+eEee+eedeeee++e++e  e+a       +    ++++++ + k+
  MMETSP0890-20130614|4597_1 31 EEDEEDKEDEEEEDEEDEEEEEEEKEEGFEAAmmggggkK----RKKKKKTKAKK 81
                5677776666666555555555555444444457754332....22222222222 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 2.1e-06
   PF11942.3   1 FldtEAevddeeeEee.eeedeeeelseeaefieeaeddrrhreldrrrekeeeedaeelaevl.klekrYgdet 73 
                 F+d+E e++deee+ + e e  ++e++  +e+ ee++++ ++re++++   e++     +++++ ++++rY++ +
  MMETSP0890-20130614|4597_1  91 FFDDEVEESDEEEDLNeERER-AAEED--KELQEEMARQNLRREREGQFGRESD-----VKNIVsQIHERYAKFA 157
                 9**************944444.44333..3355555666666666666555555.....888888888***6653 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0013
   PF11942.3   6 AevddeeeEeeeeedeeeelseeaefieea.eddrrhreldrrrekeee 53 
                  + dd +++++     ++  +++++++++a    +r+r+++r+r+ +++
  MMETSP0890-20130614|4597_1 437 EDIDDFDDDDD----NDDTQNDTDKNLDPAtILTKRIRKQQRERKRSLQ 481
                 33343333333....3333344667788878566666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1187  (0.0868198); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.41u 0.44s 00:00:02.85 Elapsed: 00:00:01.94
# Mc/sec: 1403.23
//
Query:       MMETSP0890-20130614|4602_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-10   39.2   1.1    6.9e-10   38.8   0.7    1.2  1  PF00829.16 Ribosomal prokaryotic L21 protein
  ------ inclusion threshold ------
      0.022   14.4   4.9      0.023   14.3   3.4    1.2  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
      0.042   13.3  10.8      0.061   12.8   7.5    1.3  1  PF04546.8  Sigma-70, non-essential region
       0.12   10.2  10.0       0.14   10.0   7.0    1.0  1  PF02724.9  CDC45-like protein
       0.17   11.0  12.1       0.18   10.9   8.4    1.2  1  PF06524.7  NOA36 protein
       0.28    9.5   8.8       0.29    9.4   6.1    1.1  1  PF03344.10 Daxx Family
       0.32   10.7  15.5       0.38   10.4  10.7    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
       0.53    7.9  13.8       0.52    8.0   9.6    1.1  1  PF04147.7  Nop14-like family
          3    7.4  12.8        7.7    6.1   0.0    2.1  2  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        3.4    6.4   8.3        3.8    6.2   5.7    1.2  1  PF12753.2  Nuclear pore complex subunit Nro1
        6.5    5.5   7.6        8.6    5.1   5.3    1.3  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        7.4    4.4   9.3        8.7    4.1   6.4    1.2  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3


Domain annotation for each model (and alignments):
>> PF00829.16  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.7   6.1e-13   6.9e-10      41      94 ..       3      55 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 6.1e-13
                ----.TTC----..---EEEEEEEE--------EEEE-----SEEEE-----EE CS
  PF00829.16 41 vgkdekvkiGkplvegakVkaevlehgrgkkvivfkykrrknyrkkqGhrqelt 94
                vg+ +++ iG+p+v++akV  +v+e+++++kvivfk++  k+ + ++Ghr+++t
  MMETSP0890-20130614|4602_1  3 VGTVHETLIGRPIVQDAKVIFHVEEQTKDEKVIVFKKRDHKS-KTRTGHRRDVT 55
                6777899*****************************998876.5789***9988 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.4   2.1e-05     0.023      72     122 ..      84     132 ..      29     141 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-05
   PF05887.6  72 peeegeeetepeeegeeetepeeeeepepepetepepepepepepepepGa 122
                   +++++et+p +e +e+ + +++++ e + e++ ep+    p p p+ G+
  MMETSP0890-20130614|4602_1  84 GGDDADDETDPFDEDDEDEDDDDDDDDEDDDESKSEPDD--SPPPPPKEGS 132
                 345667778887776666666655545555444444444..4444444444 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   7.5   5.4e-05     0.061      32      72 ..      69     122 ..      50     136 .. 0.46

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.4e-05
   PF04546.8  32 p..............aaaaeeeeaeeeseddeeeeeddddddededeeeeseead 72 
                                  +++++e+   +edde+e++dddddded+de+ +se +d
  MMETSP0890-20130614|4602_1  69 IqhidenhdpqilmpGGDDADDETDPFDEDDEDEDDDDDDDDEDDDES-KSEPDD 122
                 444443444465544222233333333333333333323444444433.233333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   7.0   0.00012      0.14      87     172 ..      23     118 ..      13     140 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
   PF02724.9  87 wnleNvfgasdqvivfddgdieeelekeeeerd........ayealve...mkeeee.........eesdedsdseddeeeeessasekrksesdedeeddddeed 172
                 +++e  ++ +++vivf++ d +++     + rd        + +++ +       +e               +d+ dde ++  +++e++++++d+d+eddd++++
  MMETSP0890-20130614|4602_1  23 FHVEEQTK-DEKVIVFKKRDHKSKTRTG-HRRDvtllrvtdIICDSLDiqhI---DEnhdpqilmpG-----GDDADDETDPFDEDDEDEDDDDDDDDEDDDESKS 118
                 55555555.8999999998888885544.55554555444444444444432...223345555431.....2222222222211111111122222222222222 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   8.4   0.00016      0.18     270     307 ..      85     121 ..      27     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
   PF06524.7 270 gyesdddeeesaedydeeededddddeeedetsenege 307
                 g+++dd+ +  +ed+++e+d+ddddde++ ++s++e++
  MMETSP0890-20130614|4602_1  85 GDDADDETDPFDEDDEDEDDDDDDDDEDD-DESKSEPD 121
                 45566666666666666555555555554.45556655 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.1   0.00025      0.29     428     483 ..      74     119 ..      20     140 .. 0.42

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00025
  PF03344.10 428 stesP..llasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneee 483
                 ++++P  l+++ +  ++e    +ed            +e+e++++++++e++ ++++e
  MMETSP0890-20130614|4602_1  74 ENHDPqiLMPGGDDADDETDPFDED------------DEDEDDDDDDDDEDDDESKSE 119
                 3333322222222111111111111............111111111111111111111 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.7   0.00033      0.38     242     303 ..      39     122 ..       8     125 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00033
                 XXX....................................XXXXXXXXXXXXXXXX...XXXXXXXXXXXXXX------------------- CS
   PF03153.8 242 kkqkksekkskie..........................iQvDGagddssdesee...deeadedeeekdkvieeDlddseDDvseedeed 303
                 k+++ks+++  ++                          +Q+  +g+d+ d++++   ++++ded+       ++D+dd++DD+s+++ +d
  MMETSP0890-20130614|4602_1  39 KRDHKSKTRTGHRrdvtllrvtdiicdsldiqhidenhdPQILMPGGDDADDETDpfdEDDEDEDD-------DDDDDDEDDDESKSEPDD 122
                 344333333333345556667777777777777777777665444444444222233344444444.......777888888887777666 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.6   0.00046      0.52     336     386 ..      87     120 ..      22     143 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00046
   PF04147.7 336 eeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeee 386
                 + ++e+ + ++++de+edddd++                d+e+dde+++e 
  MMETSP0890-20130614|4602_1  87 DADDET-DPFDEDDEDEDDDDDD----------------DDEDDDESKSEP 120
                 111111.1222222222222222................111111111111 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0067       7.7      53      94 ..      23      68 ..      13      71 .. 0.64
   2 ?    2.7   6.6     0.073        83       7      35 ..      91     119 ..      85     143 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0067
   PF05320.7 53 eeiedaessskqvsekikaikkr....ytrrisLfeltGilaesyn 94
                 ++e++++ +k +  k ++ k +    + r ++L+ +t i+++s +
  MMETSP0890-20130614|4602_1 23 FHVEEQTKDEKVIVFKKRDHKSKtrtgHRRDVTLLRVTDIICDSLD 68
                4556666666666555444443211225677************975 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.073
   PF05320.7   7 iedyesdddeeeeyeeeeedeedaesles 35 
                  +d  ++dde+e+ +++++de+d es+++
  MMETSP0890-20130614|4602_1  91 ETDPFDEDDEDEDDDDDDDDEDDDESKSE 119
                 33333333333333333333333332222 PP

>> PF12753.2  Nuclear pore complex subunit Nro1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.7    0.0033       3.8     211     240 ..      86     115 ..      17     125 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0033
                 HS..TTS---T..................T CS
   PF12753.2 211 ddLldivenFgkeeeeeededsddedeeee 240
                 dd  d ++ F++++e+e+d+d+dd+++ +e
  MMETSP0890-20130614|4602_1  86 DDADDETDPFDEDDEDEDDDDDDDDEDDDE 115
                 7778999****9988777777777444332 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.3    0.0075       8.6      38      67 ..      90     121 ..      54     136 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0075
  PF03896.11  38 deeae...ddvvdedeedeaeveedekteaeee 67 
                 de+ +   +d +ded++d+   e+d+++++e +
  MMETSP0890-20130614|4602_1  90 DET-DpfdEDDEDEDDDDDDDDEDDDESKSEPD 121
                 111.11113333333333333333333333333 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.4    0.0076       8.7     225     270 ..      72     117 ..      53     140 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0076
   PF05327.6 225 lddeeeeellaeeeeeeeeelfdlddddseeesvesedeedeeaks 270
                 +d++ + ++l    +++++e++  d+dd++e++ +++d+ed+++++
  MMETSP0890-20130614|4602_1  72 IDENHDPQILMPGGDDADDETDPFDEDDEDEDDDDDDDDEDDDESK 117
                 4555555555555544444444444444333333333333322221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.66
# Mc/sec: 526.47
//
Query:       MMETSP0890-20130614|4614_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-14   54.0   0.0    1.2e-14   53.9   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    8.9e-09   34.8   0.0    4.2e-05   23.0   0.0    2.0  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   1.8e-18   1.2e-14      19      78 ..       2      61 ..       1      63 [] 0.66

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 1.8e-18
   PF13306.1 19 ipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFs 78
                +p  +t+Ig++aF++++sl++++lp  l + g+  F +c+slt++t+p+ lt+ige aF+
  MMETSP0890-20130614|4614_1  2 LPAGLTTIGDFAFHGSTSLTQLSLPAGLITTGDGTFGGCTSLTQLTLPEGLTEIGECAFE 61
                566667777777777777777777777777777777777777777777777777777775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.2e-09   4.2e-05      13      56 ..       6      48 ..       2      50 .. 0.91
   2 !   15.0   0.0   2.1e-06     0.014      16      47 ..      32      62 ..      27      63 .] 0.91

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.2e-09
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                l++i+d aF+g ++L+ L+L    l++  +++f g++sL++L L
  MMETSP0890-20130614|4614_1  6 LTTIGDFAFHGSTSLTQLSLP-AGLITTGDGTFGGCTSLTQLTL 48
                89*******************.777777789***********98 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.1e-06
   PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkg 47
                 +dg+F+g+++L+ L L    l++i ++af+g
  MMETSP0890-20130614|4614_1 32 TGDGTFGGCTSLTQLTLP-EGLTEIGECAFEG 62
                5799**************.***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 260.29
//
Query:       MMETSP0890-20130614|4620_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    8.0  32.9    1.4e+04   -6.5  22.8    2.9  1  PF11759.3 Keratin-associated matrix
        7.1    6.4  15.2         66    3.2  10.5    2.2  1  PF13505.1 Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5  22.8         2   1.4e+04      14      61 ..       7      74 ..       1     113 [. 0.58

  Alignments for each domain:
  == domain 1    score: -6.5 bits;  conditional E-value: 2
   PF11759.3 14 gsg.gyG.glGcgygCgygsirrlGyGsg...........................fggyGsGsGYG.GyGygcgrps 61
                g+g g G   +    +g gs  r G+Gsg                           +      +G G G+G g g ++
  MMETSP0890-20130614|4620_1  7 GVGlGVGlVAR----SGVGSGVRSGVGSGvrsgvglvigadvgfvvcsvvgigvalG------VGNGvGLGVGAGVGF 74
                33223333333....333333444444444444666688888888888664444331......333333333332222 PP

>> PF13505.1  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  10.5    0.0096        66      23     118 ..       7     116 ..       1     118 [] 0.35

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0096
   PF13505.1  23 yvggglgvssisv......dgd..gsdsgggfgvgagyqf..ndvfglegsynysggdeatve.....vadvd.intlsisvnvgyafplsdsvllYggaGlgstdlkldvd 118
                 +vg+g+g    s+      +g+  g++sg g+ +ga+  f   +v+g+ + ++  +g   +v+     +  vd    +++++ vg +++l+  +++ +g+G+g + lk+d +
  MMETSP0890-20130614|4620_1   7 GVGLGVGLVARSGvgsgvrSGVgsGVRSGVGLVIGADVGFvvCSVVGIGVALGVGNGVGLGVGagvgfG--VDlGVATNVRLGVGADVGLGVEIGIGLGVGIGALGLKVDDH 116
                 333333333222222223322211222233332222222211345555554444333222332333231..22111223555555555554445666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.62
# Mc/sec: 456.08
//
Query:       MMETSP0890-20130614|4622_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 857.83
//
Query:       MMETSP0890-20130614|4625_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-21   75.8  17.6    4.5e-06   26.1   0.0    5.9  7  PF13414.1  TPR repeat
    5.3e-19   66.4  18.4     0.0019   17.8   0.7    7.7  7  PF07719.12 Tetratricopeptide repeat
      6e-19   66.6  12.5    0.00042   19.6   0.0    7.2  7  PF00515.23 Tetratricopeptide repeat
    1.6e-14   52.3   6.1      0.016   14.8   0.0    6.6  7  PF13181.1  Tetratricopeptide repeat
    2.1e-13   49.4  25.0      0.012   16.0   0.0    8.2  8  PF13428.1  Tetratricopeptide repeat
    1.1e-12   47.5  23.4    0.00013   21.6   0.6    5.7  6  PF13424.1  Tetratricopeptide repeat
    4.1e-10   39.9  30.5    0.00027   21.4   0.0    7.4  7  PF13432.1  Tetratricopeptide repeat
    1.1e-06   28.5  24.6      0.056   13.8   0.0    8.3  8  PF13174.1  Tetratricopeptide repeat
    1.2e-06   28.0   7.3       0.45   10.7   0.0    6.8  7  PF13431.1  Tetratricopeptide repeat
    3.2e-06   26.4  16.8        0.1   12.3   0.2    6.6  6  PF13176.1  Tetratricopeptide repeat
    0.00031   20.6  17.3      0.035   14.1   0.4    4.6  4  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0037   16.2   4.0     0.0037   16.2   2.8    3.2  2  PF13429.1  Tetratricopeptide repeat
     0.0092   15.6   1.6      0.027   14.1   0.0    2.6  3  PF12968.2  Domain of Unknown Function (DUF3856)
  ------ inclusion threshold ------
      0.054   13.2   0.2      0.054   13.2   0.1    5.2  5  PF13374.1  Tetratricopeptide repeat
       0.82   10.2  14.6         44    4.8   3.0    5.8  5  PF08238.7  Sel1 repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00054       0.5      18      62 ..     114     157 ..     107     164 .. 0.87
   2 !   18.6   0.0   1.1e-06   0.00098       9      44 ..     207     242 ..     200     243 .. 0.92
   3 !   26.1   0.0   4.9e-09   4.5e-06       5      50 ..     237     282 ..     233     286 .. 0.95
   4 !   25.1   0.4   9.5e-09   8.7e-06      22      68 ..     288     333 ..     287     335 .. 0.95
   5 !   15.1   0.6   1.3e-05     0.012      17      67 ..     317     367 ..     315     369 .. 0.85
   6 ?    4.4   2.9     0.028        25      16      63 ..     351     403 ..     337     409 .. 0.78
   7 ?    2.0   0.3      0.16   1.4e+02       3      32 ..     378     407 ..     376     420 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00054
   PF13414.1  18 dydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledye 62 
                 +  eA+e +++  ++ p++  ++++ Ala++ +  d++ A+  +e
  MMETSP0890-20130614|4625_1 114 RCVEALEVLNELKSILPSSSFVFAQQALAHYARR-DFDTAINTFE 157
                 5679****************************97.8*****9987 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.1e-06
   PF13414.1   9 lGnalfkegdydeAieayekAleldpnnaelyynlA 44 
                  Gn++  +++++ A+ ++++Al+ld ++ +++  ++
  MMETSP0890-20130614|4625_1 207 IGNYYSLRRQHERAVLYFRRALRLDRKCLSAWTLMG 242
                 59*************************999998887 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 4.9e-09
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylkl 50 
                 a+  +G +++++++   A+e y++A++ ++ +  ++y+l+++y++l
  MMETSP0890-20130614|4625_1 237 AWTLMGHEFIELKNTNAAVESYRRAVDTNSRDYRAWYGLGQTYEML 282
                 7999***************************************987 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 9.5e-09
   PF13414.1  22 AieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 A+ +y+kA +l+pn+   + ++A + ++l  +  +A++ y+kA ++d
  MMETSP0890-20130614|4625_1 288 ALYYYRKAASLRPNDGRMWIAIANCNEQLQ-RIPQAMTFYQKAAQID 333
                 899**************************7.789**********998 PP

  == domain 5    score: 15.1 bits;  conditional E-value: 1.3e-05
   PF13414.1  17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 ++  +A  +y+kA ++d     + + lA++y++   d+e+A+ +y++ l++
  MMETSP0890-20130614|4625_1 317 QRIPQAMTFYQKAAQIDDPEGHAALKLAKLYRHHTHDPEKAAIYYSQYLNI 367
                 67899************76666777789999988789**********9987 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.028
   PF13414.1  16 egdydeAieayekAleld......pnnaelyynlAlaylklgkdyeeAledyek 63 
                  +d+++A  +y++ l +         +ae+ + lA  + ++gk  e+A + + +
  MMETSP0890-20130614|4625_1 351 THDPEKAAIYYSQYLNIAgdaeilDTTAEAILYLAEHHKNNGK-LEKAQTLLAR 403
                 5799***********98633444377899*************5.7999877665 PP

  == domain 7    score: 2.0 bits;  conditional E-value: 0.16
   PF13414.1   3 AealkelGnalfkegdydeAieayekAlel 32 
                 Aea   l++ + ++g++++A  ++ + l+ 
  MMETSP0890-20130614|4625_1 378 AEAILYLAEHHKNNGKLEKAQTLLARLLDF 407
                 788888899999999999999998888876 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0082       7.4       5      25 ..     137     157 ..     133     165 .. 0.84
   2 !   16.8   0.0   4.5e-06    0.0041       2      33 ..     202     233 ..     201     234 .. 0.91
   3 !    8.6   0.0    0.0019       1.7       3      31 ..     237     265 ..     236     268 .. 0.90
   4 !   17.8   0.7   2.1e-06    0.0019       2      34 .]     270     302 ..     269     302 .. 0.96
   5 !   12.6   0.0   9.6e-05     0.087       4      31 ..     306     333 ..     303     335 .. 0.94
   6 ?    2.1   0.3      0.22     2e+02      14      31 ..     351     368 ..     339     371 .. 0.78
   7 !    7.1   0.8    0.0054       4.9       1      29 [.     378     406 ..     378     408 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0082
                 HHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafe 25 
                  +++la+y+++d++ A++ fe
  MMETSP0890-20130614|4625_1 137 AQQALAHYARRDFDTAINTFE 157
                 5789*************9998 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e ++ +G+ y  ++++e+A+ +f++Al+ld +
  MMETSP0890-20130614|4625_1 202 ETCCIIGNYYSLRRQHERAVLYFRRALRLDRK 233
                 778899***********************976 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a+ ++G   ++l++ + A+e +++A+  +
  MMETSP0890-20130614|4625_1 237 AWTLMGHEFIELKNTNAAVESYRRAVDTN 265
                 79999********************9766 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+y lG+ y+ l  +  Al +++kA +l Pn+
  MMETSP0890-20130614|4625_1 270 RAWYGLGQTYEMLTMHFYALYYYRKAASLRPND 302
                 69*****************************97 PP

  == domain 5    score: 12.6 bits;  conditional E-value: 9.6e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                 + +++++ ++l++  +A  +++kA ++d
  MMETSP0890-20130614|4625_1 306 WIAIANCNEQLQRIPQAMTFYQKAAQID 333
                 999**********************998 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.22
                 TT-HHHHHHHHHHHHHH- CS
  PF07719.12  14 lgdyeeAleafekAleld 31 
                   d+e+A+ ++ + l ++
  MMETSP0890-20130614|4625_1 351 THDPEKAAIYYSQYLNIA 368
                 4577********999876 PP

  == domain 7    score: 7.1 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAle 29 
                 aea  +l++ + ++g++e+A  ++ + l 
  MMETSP0890-20130614|4625_1 378 AEAILYLAEHHKNNGKLEKAQTLLARLLD 406
                 78999*****************9999885 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.059        54       6      25 ..     138     157 ..     134     157 .. 0.85
   2 !   19.6   0.0   4.6e-07   0.00042       2      33 ..     202     233 ..     201     234 .. 0.93
   3 !   15.4   0.0     1e-05    0.0092       3      31 ..     237     265 ..     236     268 .. 0.92
   4 !   13.9   0.7   2.9e-05     0.027       2      34 .]     270     302 ..     269     302 .. 0.96
   5 !   14.2   0.0   2.4e-05     0.022       4      31 ..     306     333 ..     304     334 .. 0.93
   6 ?   -1.7   0.0       2.6   2.4e+03      16      26 ..     353     363 ..     350     368 .. 0.74
   7 ?    0.7   0.1      0.45   4.1e+02       1      20 [.     378     397 ..     378     401 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.059
                 HHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyye 25 
                 + ++a++   ++d A+  +e
  MMETSP0890-20130614|4625_1 138 QQALAHYARRDFDTAINTFE 157
                 6799************8775 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 4.6e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 ++++ +Gn y    +++ A+ y+++AL+l+ +
  MMETSP0890-20130614|4625_1 202 ETCCIIGNYYSLRRQHERAVLYFRRALRLDRK 233
                 78899*************************87 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALeln 31 
                 a+  +G+ + +l++ + A+e y++A+  n
  MMETSP0890-20130614|4625_1 237 AWTLMGHEFIELKNTNAAVESYRRAVDTN 265
                 9************************9877 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                 +a+y+lG++y  l ++  Al yy+kA +l+Pn+
  MMETSP0890-20130614|4625_1 270 RAWYGLGQTYEMLTMHFYALYYYRKAASLRPND 302
                 8******************************97 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALeln 31 
                 +  ++n+  +l++  +A  +y+kA +++
  MMETSP0890-20130614|4625_1 306 WIAIANCNEQLQRIPQAMTFYQKAAQID 333
                 8889********************9998 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 2.6
                 -HHHHHHHHHH CS
  PF00515.23  16 kydeAleyyek 26 
                 ++++A  yy++
  MMETSP0890-20130614|4625_1 353 DPEKAAIYYSQ 363
                 67888888877 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHTT-HHHH CS
  PF00515.23   1 akalynlGnaylklgkydeA 20 
                 a+a   l+  + ++gk+++A
  MMETSP0890-20130614|4625_1 378 AEAILYLAEHHKNNGKLEKA 397
                 67778899999********9 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.7   3.4e+03       7      25 ..     139     157 ..     136     157 .. 0.75
   2 !    7.5   0.0    0.0038       3.4       3      32 ..     203     232 ..     201     234 .. 0.88
   3 !   14.8   0.0   1.7e-05     0.016       3      32 ..     237     266 ..     235     269 .. 0.90
   4 !    9.7   0.3   0.00072      0.66       1      33 [.     269     301 ..     269     302 .. 0.93
   5 !   14.5   0.0   2.2e-05      0.02       2      31 ..     304     333 ..     303     335 .. 0.94
   6 ?    2.3   0.1      0.17   1.6e+02       6      31 ..     342     368 ..     338     371 .. 0.83
   7 ?   -1.8   0.0       3.6   3.3e+03      11      22 ..     388     399 ..     379     408 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.7
                 ---HHHHTT-HHHHHHHHH CS
   PF13181.1   7 lGdiYrqlGdydkAkeyle 25 
                 +++++    d+d A++ +e
  MMETSP0890-20130614|4625_1 139 QALAHYARRDFDTAINTFE 157
                 5666666779999999886 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0038
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 +++ +G  Y    +++ A  y+++al l++
  MMETSP0890-20130614|4625_1 203 TCCIIGNYYSLRRQHERAVLYFRRALRLDR 232
                 67889999999999**************98 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 1.7e-05
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                 a++++G+ + +l+++ +A e++++a++ + 
  MMETSP0890-20130614|4625_1 237 AWTLMGHEFIELKNTNAAVESYRRAVDTNS 266
                 8*************************9876 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.00072
                 ---TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkpr 33 
                 ++a+y lG++Y+ l  +  A+ y++ka +l p+
  MMETSP0890-20130614|4625_1 269 YRAWYGLGQTYEMLTMHFYALYYYRKAASLRPN 301
                 589***************************994 PP

  == domain 5    score: 14.5 bits;  conditional E-value: 2.2e-05
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 + +++++ + +ql ++ +A+ +++ka +++
  MMETSP0890-20130614|4625_1 304 RMWIAIANCNEQLQRIPQAMTFYQKAAQID 333
                 579************************997 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.17
                 T---HHHH.TT-HHHHHHHHH---HHH CS
   PF13181.1   6 nlGdiYrq.lGdydkAkeylekalelk 31 
                  l+++Yr  + d +kA  y+ + l ++
  MMETSP0890-20130614|4625_1 342 KLAKLYRHhTHDPEKAAIYYSQYLNIA 368
                 578889988999********9988775 PP

  == domain 7    score: -1.8 bits;  conditional E-value: 3.6
                 HHHTT-HHHHHH CS
   PF13181.1  11 YrqlGdydkAke 22 
                 ++++G+ +kA  
  MMETSP0890-20130614|4625_1 388 HKNNGKLEKAQT 399
                 567899999975 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.3    0.0062       5.7      19      43 ..      30      54 ..      23      55 .. 0.89
   2 ?    5.8   0.0     0.026        24       5      34 ..     137     166 ..     134     174 .. 0.83
   3 !   13.4   0.1   9.2e-05     0.084       8      42 ..     208     242 ..     206     243 .. 0.91
   4 !   16.0   0.0   1.3e-05     0.012       2      43 ..     236     277 ..     235     278 .. 0.95
   5 ?    3.0   0.0      0.21   1.9e+02      23      42 ..     291     310 ..     288     312 .. 0.86
   6 ?    3.3   0.2      0.16   1.5e+02       4      33 ..     306     336 ..     304     346 .. 0.71
   7 ?    4.8   0.1     0.053        48       3      33 ..     339     370 ..     337     376 .. 0.84
   8 !   13.6   0.8   7.8e-05     0.071       1      41 [.     378     419 ..     378     422 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0062
   PF13428.1 19 eAiallrralalaPddaealllLar 43
                +A+++l + ++++P ++ a+l La+
  MMETSP0890-20130614|4625_1 30 KAREQLAETASQFPWNWSAWLDLAD 54
                5889999999***********9997 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.026
   PF13428.1   5 lalarallalGdpdeAiallrralalaPdd 34 
                 ++ a a+ a+ d+d Ai+ ++ + + +P +
  MMETSP0890-20130614|4625_1 137 AQQALAHYARRDFDTAINTFEVLRQNFPYR 166
                 56799**************99888888755 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 9.2e-05
   PF13428.1   8 arallalGdpdeAiallrralalaPddaealllLa 42 
                 ++++  + ++++A+ ++rral+l+ + + a++l++
  MMETSP0890-20130614|4625_1 208 GNYYSLRRQHERAVLYFRRALRLDRKCLSAWTLMG 242
                 56788899***********************9987 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 1.3e-05
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLar 43 
                  a+ ++++ +++l ++ +A++ +rra+ ++  d +a++ L++
  MMETSP0890-20130614|4625_1 236 SAWTLMGHEFIELKNTNAAVESYRRAVDTNSRDYRAWYGLGQ 277
                 58999***********************************98 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.21
   PF13428.1  23 llrralalaPddaealllLa 42 
                 ++r+a++l P+d + +++ a
  MMETSP0890-20130614|4625_1 291 YYRKAASLRPNDGRMWIAIA 310
                 89*************99876 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.16
   PF13428.1   4 llalarallalGdpdeAiallrralal.aPd 33 
                 + a a+  ++l++  +A+  +++a++  +P+
  MMETSP0890-20130614|4625_1 306 WIAIANCNEQLQRIPQAMTFYQKAAQIdDPE 336
                 6677788899999***********9851565 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.053
   PF13428.1   3 allalaralla.lGdpdeAiallrralalaPd 33 
                 a l+la ++++  +dp++A+ ++ ++l  a d
  MMETSP0890-20130614|4625_1 339 AALKLAKLYRHhTHDPEKAAIYYSQYLNIAGD 370
                 6799*****9538***********99987776 PP

  == domain 8    score: 13.6 bits;  conditional E-value: 7.8e-05
   PF13428.1   1 peallalarallalGdpdeAiallrrala.laPddaealllL 41 
                 +ea l la+ + ++G +++A  ll r+l  ++P+ a+a+ +L
  MMETSP0890-20130614|4625_1 378 AEAILYLAEHHKNNGKLEKAQTLLARLLDfAGPEKAQAQAML 419
                 5899************************95679999999887 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.17   1.6e+02      30      70 ..     117     157 ..     113     164 .. 0.75
   2 ?    1.2   0.0      0.34   3.1e+02      12      29 ..     140     157 ..     134     195 .. 0.60
   3 !   13.5   0.0   4.9e-05     0.045      52      78 .]     207     233 ..     200     233 .. 0.95
   4 !   13.7   1.0   4.2e-05     0.039       7      76 ..     237     299 ..     234     301 .. 0.86
   5 !   21.6   0.6   1.5e-07   0.00013       7      76 ..     305     368 ..     299     370 .. 0.89
   6 !    8.7   0.8    0.0016       1.4       4      47 ..     377     416 ..     374     428 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.17
   PF13424.1  30 kalellrelgddhpdtaralnnlanlylalgdydeAleyle 70 
                 +ale+l el+   p    +  + a +++a+ d+d A++ +e
  MMETSP0890-20130614|4625_1 117 EALEVLNELKSILPSSSFVFAQQALAHYARRDFDTAINTFE 157
                 56666666666667767777788889999999999988876 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.34
   PF13424.1  12 alvlrrlgdydeAlelye 29 
                 al++++ +d+d A++ +e
  MMETSP0890-20130614|4625_1 140 ALAHYARRDFDTAINTFE 157
                 445555555555554443 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 4.9e-05
   PF13424.1  52 lanlylalgdydeAleylekAleiaek 78 
                 ++n+y  + +++ A+ y+++Al++++k
  MMETSP0890-20130614|4625_1 207 IGNYYSLRRQHERAVLYFRRALRLDRK 233
                 89**********************986 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 4.2e-05
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 +++ +++ + +l++   A e y++a++       ++ d  ra++ l+++y+ l  +  Al y++kA  ++
  MMETSP0890-20130614|4625_1 237 AWTLMGHEFIELKNTNAAVESYRRAVDT------NSRD-YRAWYGLGQTYEMLTMHFYALYYYRKAASLR 299
                 5667777778999999999999999976......5777.58*************************9987 PP

  == domain 5    score: 21.6 bits;  conditional E-value: 1.5e-07
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalg.dydeAleylekAleia 76 
                  +  +a++ ++l++  +A ++y+ka ++      d+p+   a + la ly+++  d ++A  y+ + l+ia
  MMETSP0890-20130614|4625_1 305 MWIAIANCNEQLQRIPQAMTFYQKAAQI------DDPE-GHAALKLAKLYRHHThDPEKAAIYYSQYLNIA 368
                 56789***********************......6788.999**********6648999*********997 PP

  == domain 6    score: 8.7 bits;  conditional E-value: 0.0016
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtar 47 
                 +a +  +la+ ++  g++++A++l+ + l+ +   g++ ++ a 
  MMETSP0890-20130614|4625_1 377 TAEAILYLAEHHKNNGKLEKAQTLLARLLDFA---GPEKAQ-AQ 416
                 6777779*******************999985...666554.55 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.68   6.2e+02      15      39 ..      30      54 ..      27      56 .. 0.92
   2 !    8.7   0.7    0.0028       2.6       2      43 ..     138     179 ..     137     194 .. 0.77
   3 ?    4.6   0.2     0.052        47       8      34 ..     212     238 ..     207     242 .. 0.70
   4 !   21.4   0.0   2.9e-07   0.00027       3      43 ..     241     281 ..     239     282 .. 0.94
   5 !   12.0   0.0   0.00025      0.23      19      62 ..     291     334 ..     287     337 .. 0.92
   6 ?    4.6   0.3     0.053        49      32      63 ..     338     370 ..     334     372 .. 0.83
   7 ?    4.5   0.6     0.057        52      31      59 ..     378     406 ..     376     417 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.68
   PF13432.1 15 eAlaaleaalalaPeaaeallllae 39
                +A+++l +   ++P ++ a+l la+
  MMETSP0890-20130614|4625_1 30 KAREQLAETASQFPWNWSAWLDLAD 54
                6999*******************98 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0028
   PF13432.1   2 alArallraGdydeAlaaleaalala.Peaaeallllaeallr 43 
                 ++A+a ++++d+d A++ + ++l+++ P   + l  +  +l+ 
  MMETSP0890-20130614|4625_1 138 QQALAHYARRDFDTAINTF-EVLRQNfPYRLDQLDVYSNILYV 179
                 79*****************.66665558887777777776664 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.052
   PF13432.1   8 lraGdydeAlaaleaalalaPeaaeal 34 
                   +++ ++A+ ++++al+l+ ++  a+
  MMETSP0890-20130614|4625_1 212 SLRRQHERAVLYFRRALRLDRKCLSAW 238
                 334558888888888888888777776 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 2.9e-07
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallr 43 
                  +++++++++  +A++ +++a++ + ++++a+++l++++ +
  MMETSP0890-20130614|4625_1 241 MGHEFIELKNTNAAVESYRRAVDTNSRDYRAWYGLGQTYEM 281
                 68999*********************************986 PP

  == domain 5    score: 12.0 bits;  conditional E-value: 0.00025
   PF13432.1  19 aleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62 
                 ++++a  l P + + + + a +  +l r ++A  ++++a+++++
  MMETSP0890-20130614|4625_1 291 YYRKAASLRPNDGRMWIAIANCNEQLQRIPQAMTFYQKAAQIDD 334
                 689999999******************************98776 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.053
   PF13432.1  32 eallllaeall.rlgrldeAaallraalalaPd 63 
                  a l la ++  +  ++++Aa+++ ++l +a d
  MMETSP0890-20130614|4625_1 338 HAALKLAKLYRhHTHDPEKAAIYYSQYLNIAGD 370
                 58899999999777************9966554 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.057
   PF13432.1  31 aeallllaeallrlgrldeAaallraala 59 
                 aea l+lae +   g+l++A  ll+++l+
  MMETSP0890-20130614|4625_1 378 AEAILYLAEHHKNNGKLEKAQTLLARLLD 406
                 56666666666666766666666666653 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.1e-05     0.056       5      31 ..     138     164 ..     135     164 .. 0.93
   2 ?    1.4   0.0      0.52   4.8e+02      10      28 ..     210     229 ..     207     231 .. 0.79
   3 ?    4.0   0.0     0.082        75      11      28 ..     246     263 ..     237     267 .. 0.85
   4 ?    6.7   0.5     0.011       9.9       2      32 ..     271     301 ..     270     302 .. 0.93
   5 ?    3.2   0.1      0.14   1.3e+02       6      27 ..     309     330 ..     308     333 .. 0.87
   6 ?    5.9   0.0      0.02        18       2      28 ..     339     366 ..     338     370 .. 0.89
   7 ?    3.7   0.1       0.1        92       1      28 [.     379     406 ..     379     408 .. 0.84
   8 ?    2.7   0.4      0.21   1.9e+02       5      27 ..     400     423 ..     396     425 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
   PF13174.1   5 klalsyyklgdtdeAlealerlikeyP 31 
                 ++al++y+  d+d A+ ++e l++++P
  MMETSP0890-20130614|4625_1 138 QQALAHYARRDFDTAINTFEVLRQNFP 164
                 78*****977****************9 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.52
                 HHH.HHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyk.lgdtdeAlealerlik 28 
                 yy    ++++A+ +++r ++
  MMETSP0890-20130614|4625_1 210 YYSlRRQHERAVLYFRRALR 229
                 5553469*********9986 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.082
                 HHHHHHHHHHHHHHHHHH CS
   PF13174.1  11 yklgdtdeAlealerlik 28 
                 ++l++t +A+e ++r ++
  MMETSP0890-20130614|4625_1 246 IELKNTNAAVESYRRAVD 263
                 6778***********997 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlikeyPd 32 
                 A+y l++ y++l+++  Al ++++  +  P+
  MMETSP0890-20130614|4625_1 271 AWYGLGQTYEMLTMHFYALYYYRKAASLRPN 301
                 99*********99***********9999998 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 +a + ++l++  +A++ +++  
  MMETSP0890-20130614|4625_1 309 IANCNEQLQRIPQAMTFYQKAA 330
                 689999977**********976 PP

  == domain 6    score: 5.9 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
   PF13174.1   2 Alyklalsyyklg.dtdeAlealerlik 28 
                 A +kla++y+  + d+++A  ++ ++++
  MMETSP0890-20130614|4625_1 339 AALKLAKLYRHHThDPEKAAIYYSQYLN 366
                 789*******9777*********99986 PP

  == domain 7    score: 3.7 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   1 dAlyklalsyyklgdtdeAlealerlik 28 
                 +A ++la+ ++++g+ ++A ++l rl++
  MMETSP0890-20130614|4625_1 379 EAILYLAEHHKNNGKLEKAQTLLARLLD 406
                 57778888777789***********985 PP

  == domain 8    score: 2.7 bits;  conditional E-value: 0.21
                 HHHHHHHHHH.HHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklg.dtdeAlealerli 27 
                 +la++++ +g ++++A ++l++++
  MMETSP0890-20130614|4625_1 400 LLARLLDFAGpEKAQAQAMLREVR 423
                 689999985559*********986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.8   1.7e+03       9      20 ..      42      53 ..      38      56 .. 0.87
   2 ?   -0.1   0.0       1.4   1.3e+03      10      33 ..     130     153 ..     127     154 .. 0.87
   3 ?   -0.6   0.0         2   1.8e+03       6      20 ..     213     227 ..     201     233 .. 0.74
   4 !   10.7   0.0    0.0005      0.45       2      24 ..     258     280 ..     257     285 .. 0.94
   5 ?    6.2   0.0     0.014        13       1      28 [.     291     318 ..     291     323 .. 0.87
   6 ?   -0.3   0.0       1.6   1.5e+03       1      32 [.     325     357 ..     325     360 .. 0.64
   7 ?    6.2   0.0     0.013        12      13      33 ..     378     398 ..     375     399 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.8
   PF13431.1  9 dPnnadaynnLA 20
                 P n+ a+  LA
  MMETSP0890-20130614|4625_1 42 FPWNWSAWLDLA 53
                699******999 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.4
   PF13431.1  10 PnnadaynnLAelllnnGdleeAe 33 
                 P ++ ++ + A++++++ d+++A+
  MMETSP0890-20130614|4625_1 130 PSSSFVFAQQALAHYARRDFDTAI 153
                 778888889999999******998 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 2
   PF13431.1   6 leldPnnadaynnLA 20 
                 l+++ + a++y+++A
  MMETSP0890-20130614|4625_1 213 LRRQHERAVLYFRRA 227
                 556666677777666 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.0005
   PF13431.1   2 yekaleldPnnadaynnLAelll 24 
                 y++a++ +  ++ a++ L++++ 
  MMETSP0890-20130614|4625_1 258 YRRAVDTNSRDYRAWYGLGQTYE 280
                 9********************97 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.014
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGd 28 
                 +y+ka  l Pn+   + + A++   +++
  MMETSP0890-20130614|4625_1 291 YYRKAASLRPNDGRMWIAIANCNEQLQR 318
                 6*******************99887765 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 1.6
   PF13431.1   1 lyekaleldPnnadaynnLAelll.nnGdleeA 32 
                 +y+ka ++d     a   LA+l+     d+e+A
  MMETSP0890-20130614|4625_1 325 FYQKAAQIDDPEGHAALKLAKLYRhHTHDPEKA 357
                 588888886555666667777775245666655 PP

  == domain 7    score: 6.2 bits;  conditional E-value: 0.013
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a+a  +LAe ++nnG+le+A+
  MMETSP0890-20130614|4625_1 378 AEAILYLAEHHKNNGKLEKAQ 398
                 68899***************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.12   1.1e+02       6      23 ..     140     157 ..     136     162 .. 0.86
   2 !   12.3   0.2   0.00011       0.1       1      30 [.     203     232 ..     203     235 .. 0.90
   3 ?    3.0   0.0      0.11        96       1      30 [.     237     264 ..     237     270 .. 0.81
   4 !    7.5   0.0    0.0039       3.6       3      35 ..     307     339 ..     306     340 .. 0.86
   5 ?   -0.6   0.1       1.5   1.4e+03       4      24 ..     342     363 ..     341     371 .. 0.79
   6 !    6.9   0.2    0.0058       5.3       1      28 [.     380     407 ..     380     421 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.12
   PF13176.1   6 arlysrlgdyekAielye 23 
                 a ++ +++d+++Ai+ +e
  MMETSP0890-20130614|4625_1 140 ALAHYARRDFDTAINTFE 157
                 6678889*******9988 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00011
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +++ +++ ys ++++e+A+ +++raL+l++
  MMETSP0890-20130614|4625_1 203 TCCIIGNYYSLRRQHERAVLYFRRALRLDR 232
                 6899********************777765 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.11
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 a+  +++ + +l ++  A+e y+r  a++ 
  MMETSP0890-20130614|4625_1 237 AWTLMGHEFIELKNTNAAVESYRR--AVDT 264
                 567788888899999*********..8875 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0039
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdplda 35 
                  ++a++ ++l++  +A ++y++a ++++ +++a
  MMETSP0890-20130614|4625_1 307 IAIANCNEQLQRIPQAMTFYQKAAQIDDPEGHA 339
                 578888899*************99999888876 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 1.5
   PF13176.1   4 nLarlysr.lgdyekAielyer 24 
                  La+ly+    d ekA+ +y +
  MMETSP0890-20130614|4625_1 342 KLAKLYRHhTHDPEKAAIYYSQ 363
                 5888888878888999988855 PP

  == domain 6    score: 6.9 bits;  conditional E-value: 0.0058
   PF13176.1   1 allnLarlysrlgdyekAielyeraLal 28 
                 a+l+La+ + + g+ ekA +l+ r+L +
  MMETSP0890-20130614|4625_1 380 AILYLAEHHKNNGKLEKAQTLLARLLDF 407
                 689*********************8765 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.041        37      15      50 ..     125     158 ..     113     200 .. 0.65
   2 !    8.1   0.6    0.0029       2.6      28      83 ..     206     260 ..     172     261 .. 0.83
   3 !   14.1   0.4   3.8e-05     0.035       3      84 .]     249     329 ..     247     329 .. 0.87
   4 ?    6.3   1.1      0.01       9.5       3      50 ..     352     403 ..     338     419 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.041
                 HCCC-ST-HHHHCHHH.HHHHHHH---HHHHHHHHHC CS
   PF12895.2  15 llaespkdpedaylya.lAlclylngeykrAyellrk 50 
                 l +  p   ++++ +a  Al++y   ++++A++ ++ 
  MMETSP0890-20130614|4625_1 125 LKSILP---SSSFVFAqQALAHYARRDFDTAINTFEV 158
                 444444...3344444479999999999999988843 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0029
                 HHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  28 lyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavLek 83 
                 +   ++ + l  +++rA+ ++r+ l ld + l +  l+++ +++l+  + A + + +
  MMETSP0890-20130614|4625_1 206 II--GNYYSLRRQHERAVLYFRRaLRLDRKCLSAWTLMGHEFIELKNTNAAVESYRR 260
                 44..77889999***********999999998888888*************998876 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 3.8e-05
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2   3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryll.ArcllklgkydeAiavLeka 84 
                 +n++ A+  +++++ +++  ++  ++y l++++  +  +  A+ ++rk   l+++  g  +++ A c ++l++  +A + ++ka
  MMETSP0890-20130614|4625_1 249 KNTNAAVESYRRAVDTNS--RDYRAWYGLGQTYEMLTMHFYALYYYRKaASLRPND-GRMWIAiANCNEQLQRIPQAMTFYQKA 329
                 678889999999999987..3799*********99999999*9***9977777766.9999999***************99985 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.01
                 T-HHHHHHHHHHHCCC-ST....-HHHHCHHHHHHHHHH---HHHHHHHHHC CS
   PF12895.2   3 hnyknAlflaekllaespk....dpedaylyalAlclylngeykrAyellrk 50 
                 h+ ++A  ++ ++l  +      d+ ++++++lA+ + +ng+ ++A  ll +
  MMETSP0890-20130614|4625_1 352 HDPEKAAIYYSQYLNIAGDaeilDTTAEAILYLAEHHKNNGKLEKAQTLLAR 403
                 777888899999999888766654455577779*************999966 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.18   1.6e+02      24      95 ..     115     184 ..     107     202 .. 0.66
   2 !   16.2   2.8     4e-06    0.0037     151     269 ..     206     324 ..     173     332 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.18
   PF13429.1  24 fkkAlevLksaadkaapskdeeyWrtladLAw.alqdddtaraAyrqLlasgkaraedyerliellydaepkd 95 
                   +AlevL + ++ + ps+   + ++  +LA  a +d+dta +  ++L +    r++ ++   ++ly +e + 
  MMETSP0890-20130614|4625_1 115 CVEALEVL-NELKSILPSSSFVFAQQ--ALAHyARRDFDTAINTFEVLRQNFPYRLDQLDVYSNILYVKEQRA 184
                 56788888.56677766666666543..455524466788888888888877777777777777766666554 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4e-06
   PF13429.1 151 araellrqegqkkkAlrllrralalkpassdlraallWlliDlgrraelrealaawkaea...esdsaLwgpfaaayllLgrpkkALeylrkqaksnskdplwllaYADaleaaGradeAwr 269
                 +  ++++ + q+++A+  +rral+l+++  ++   +    i+l++++    a++ ++++    ++d + w  ++  y  L +   AL y+rk a+ +++d  + +a A   e+ +r  +A++
  MMETSP0890-20130614|4625_1 206 IIGNYYSLRRQHERAVLYFRRALRLDRKCLSAWTLMGHEFIELKNTNA---AVESYRRAVdtnSRDYRAWYGLGQTYEMLTMHFYALYYYRKAASLRPNDGRMWIAIANCNEQLQRIPQAMT 324
                 5678999999****************98555555555789******95...9*****9989888899999999999*************************999999999999999888876 PP

>> PF12968.2  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.9   7.2e+03      56      74 ..     134     152 ..     131     161 .. 0.57
   2 ?   -0.9   0.0       1.3   1.2e+03      78      99 ..     217     238 ..     202     269 .. 0.54
   3 !   14.1   0.0   2.9e-05     0.027      64     127 ..     271     330 ..     264     342 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 7.9
   PF12968.2  56 lchavlsealaklgrydea 74 
                 +++a+ + a    +++d+a
  MMETSP0890-20130614|4625_1 134 FVFAQQALAHYARRDFDTA 152
                 4455555555555555555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.3
   PF12968.2  78 aekalryfnrrGeleqdeGklW 99 
                  e+a+ yf r   l+++  + W
  MMETSP0890-20130614|4625_1 217 HERAVLYFRRALRLDRKCLSAW 238
                 5666666666555555444444 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 2.9e-05
   PF12968.2  64 alaklgrydealesaekalryfnrrGeleqdeGklWiaavfsravaleelGrkeealkefrkag 127
                 a  +lg+  e l+    al+y+ +   l+ ++G++Wia+    a   e+l r  +a++ ++ka+
  MMETSP0890-20130614|4625_1 271 AWYGLGQTYEMLTMHFYALYYYRKAASLRPNDGRMWIAI----ANCNEQLQRIPQAMTFYQKAA 330
                 7889999999***************************86....445566667777777777776 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.7   1.6e+03       9      21 ..     140     152 ..     137     157 .. 0.79
   2 ?   13.2   0.1   5.9e-05     0.054       8      34 ..     207     233 ..     203     237 .. 0.91
   3 ?   -1.1   0.0         2   1.8e+03      14      31 ..     315     332 ..     309     332 .. 0.81
   4 ?    3.1   0.2     0.093        85       1      30 [.     377     406 ..     377     408 .. 0.90
   5 ?   -1.3   0.3       2.3   2.1e+03      19      31 ..     413     425 ..     411     426 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.7
   PF13374.1   9 AlalrargryeeA 21 
                 Ala++ar++++ A
  MMETSP0890-20130614|4625_1 140 ALAHYARRDFDTA 152
                 7888888888877 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 5.9e-05
   PF13374.1   8 LAlalrargryeeAlaleeealairrr 34 
                 ++++++ r+++e+A+ ++++al + r+
  MMETSP0890-20130614|4625_1 207 IGNYYSLRRQHERAVLYFRRALRLDRK 233
                 69********************99887 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2
   PF13374.1  14 argryeeAlaleeealai 31 
                 ++ r  +A  ++++a+ i
  MMETSP0890-20130614|4625_1 315 QLQRIPQAMTFYQKAAQI 332
                 568999*******99876 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.093
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeeala 30 
                 ta a   LA  + + g++e+A  l+ + l+
  MMETSP0890-20130614|4625_1 377 TAEAILYLAEHHKNNGKLEKAQTLLARLLD 406
                 78899999****************998875 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 2.3
   PF13374.1  19 eeAlaleeealai 31 
                 ++A a+++e++a+
  MMETSP0890-20130614|4625_1 413 AQAQAMLREVRAM 425
                 68999****9986 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.39   3.5e+02      23      35 ..     216     228 ..     205     231 .. 0.80
   2 ?    4.8   3.0     0.048        44      25      37 ..     286     298 ..     270     299 .. 0.72
   3 ?    3.0   0.0      0.17   1.5e+02      26      36 ..     321     331 ..     313     334 .. 0.84
   4 ?    2.1   0.0      0.34   3.1e+02       3      32 ..     339     362 ..     337     363 .. 0.65
   5 ?   -2.0   0.1       6.2   5.7e+03       3      16 ..     397     408 ..     396     419 .. 0.54

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.39
   PF08238.7  23 dpekAleWyekAA 35 
                  +e+A+ ++++A 
  MMETSP0890-20130614|4625_1 216 QHERAVLYFRRAL 228
                 5789*******95 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.048
   PF08238.7  25 ekAleWyekAAeq 37 
                   Al++y+kAA++
  MMETSP0890-20130614|4625_1 286 FYALYYYRKAASL 298
                 46*********86 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.17
   PF08238.7  26 kAleWyekAAe 36 
                 +A+  y+kAA+
  MMETSP0890-20130614|4625_1 321 QAMTFYQKAAQ 331
                 69********7 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.34
   PF08238.7   3 AqynLG.lyymylnGlgGvpkdpekAleWye 32 
                 A+ +L+ ly+  ++       dpekA  +y 
  MMETSP0890-20130614|4625_1 339 AALKLAkLYR--HHTH-----DPEKAAIYYS 362
                 7888883333..3332.....8889999996 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 6.2
   PF08238.7   3 AqynLGlyymylnG 16 
                 Aq  L+  ++++  
  MMETSP0890-20130614|4625_1 397 AQTLLA--RLLDFA 408
                 899999..433443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.97
# Mc/sec: 1109.24
//
Query:       MMETSP0890-20130614|4627_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1169  (0.0855032); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 331.26
//
Query:       MMETSP0890-20130614|4621_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-22   79.5   0.3      2e-10   40.4   0.0    2.5  2  PF05637.7  galactosyl transferase GMA12/MNN10 family
    1.6e-11   43.8   0.1    5.2e-11   42.1   0.0    1.8  2  PF03314.9  Protein of unknown function, DUF273
     0.0026   17.0   1.2      0.014   14.5   0.0    2.4  2  PF01501.15 Glycosyl transferase family 8
     0.0087   15.7   0.1      0.014   15.1   0.1    1.3  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF05637.7  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   5.9e-14     2e-10      23      97 ..      65     134 ..      45     136 .. 0.87
   2 !   36.4   0.2     1e-12   3.4e-09     135     236 ..     144     279 ..     138     281 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 5.9e-14
   PF05637.7  23 helllkvikNrvdYaekhgyeifykkvsallaeemnsvWaklpairaamkkyPeaewiWwlDqdAlimnmdlsle 97 
                 +++ +++i+N+++Ya++h+y++  +++++ l+   ++ W+kl  + +++   P+ +w+ +lD dAl+ n dl le
  MMETSP0890-20130614|4621_1  65 AAMNEEAIQNKRQYAKRHDYDLHLVEAETTLE--RPAPWSKLKRLAQVL---PSYDWLLYLDGDALVANADLDLE 134
                 5567899*****************77777776..89*********9999...6669***************9986 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 1e-12
   PF05637.7 135 lviisqdlnglnagsflirnsewsklllDlwa.........................dpllrekkkavtesdeqsaleyllekh.pevlskvglveqkvinsydegeke........lgykegdlvvhfagCkvan 236
                 ++i  qd++g n+g+fli+ns++s+ +l                             + l  +   +++ ++ q++ +y  +++ ++++s++ +++q +insy   ++          +  +gd++vh+ag k  n
  MMETSP0890-20130614|4621_1 144 DIIMAQDWGGYNTGVFLIKNSNFSLSFLHQMYdaattynlarkepwynhampfeyeqRALHFFTRSKTWTKKGQKIPQYYDKADaKNIRSHIKVLPQCAINSYLVRPRFhydtkhsnAQFAQGDFIVHLAGHKANN 279
                 7999************************998889999999998777777777777753334444444566777777776655431567777777779999999888665888888889999*********977665 PP

>> PF03314.9  Protein of unknown function, DUF273
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   1.5e-14   5.2e-11       3     104 ..      77     176 ..      75     219 .. 0.84
   2 ?   -1.3   0.0      0.29   9.8e+02     106     156 ..     216     265 ..     200     285 .. 0.59

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.5e-14
   PF03314.9   3 CYakihnYelvlvedtdlkCeqkdklfrrhCivakilesldavlflDadigvvnpkrkie..efleekvdivfydrflnweiaagsYlvrntkyavklLnefad 104
                  Yak h+Y+l+lve  + +  ++   + +   +a++l+s+d++l+lD+d  v n++  +e   ++++++di++ + +  +  ++g++l++n++++ ++L+++ d
  MMETSP0890-20130614|4621_1  77 QYAKRHDYDLHLVEA-ETTL-ERPAPWSKLKRLAQVLPSYDWLLYLDGDALVANADLDLElcGYIDDRYDIIMAQDWGGY--NTGVFLIKNSNFSLSFLHQMYD 176
                 69**********954.3333.334445555669**********************99888557***********999887..5899*************98754 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.29
   PF03314.9 106 esklPksfhgtdngalhiflaekllpeaseeidvCr.kayeksknyedlfty 156
                  +k+P+ +  +d   +++++  k+lp+   ++ + r +++ ++k+ + +f+ 
  MMETSP0890-20130614|4621_1 216 GQKIPQYYDKADAKNIRSHI--KVLPQCAINSYLVRpRFHYDTKHSNAQFAQ 265
                 55667777777777666666..456666666666653333344445555444 PP

>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.2e-06     0.014      42     116 ..      55     132 ..      29     165 .. 0.66
   2 ?    0.2   0.5       0.1   3.4e+02     208     248 ..     170     214 ..     147     216 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.2e-06
  PF01501.15  42 eenieklnelgsevsevepleesdkekleey........klqelskkaisklnylRl.ylaelfpkydKviyLDaDivv.vkdid 116
                 e  ++++  l+  + e        ++++++y         l e ++  + ++  ++l +la+++p+yd ++yLD D +v + d+d
  MMETSP0890-20130614|4621_1  55 EVTLSRFAGLAAMNEEA-------IQNKRQYakrhdydlHLVEAETTLERPAPWSKLkRLAQVLPSYDWLLYLDGDALVaNADLD 132
                 44444444444333222.......222222223333456444444444445555554389*******************888876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.1
  PF01501.15 208 pLdprynvlglgy....ksskksrkealeeaaviHYigksKPWle 248
                 +L+++y + ++++    + + +   +++ e   +H+ ++sK W++
  MMETSP0890-20130614|4621_1 170 FLHQMYDAATTYNlarkEPWYNHAMPFEYEQRALHFFTRSKTWTK 214
                 344444444444445543355555555577788999999999986 PP

>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     4e-06     0.014      98     172 ..     137     243 ..     117     281 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4e-06
  PF03407.11  98 Dnldgttadglknll...NsGfffvrptsrskallkkwaeklatesgaw.............Dqdvfnellregaake................lgvkirfLdtalf 172
                 + +d++++  + + +   N+G+f +++++ s+++l++++++ +t+  a              +q +++ + r +   +                 + +i++L++  +
  MMETSP0890-20130614|4621_1 137 GYIDDRYDIIMAQDWggyNTGVFLIKNSNFSLSFLHQMYDAATTYNLARkepwynhampfeyEQRALHFFTRSKTWTKkgqkipqyydkadaknIRSHIKVLPQCAI 243
                 555555555566666677***********************999944443666777777777777777777776543377777777777777666666677776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:01.08
# Mc/sec: 832.07
//
Query:       MMETSP0890-20130614|4632_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-15   55.4   0.0    9.4e-15   54.5   0.0    1.4  1  PF01896.14 Eukaryotic and archaeal DNA primase small subunit


Domain annotation for each model (and alignments):
>> PF01896.14  Eukaryotic and archaeal DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.9e-19   9.4e-15      65     145 .]       2     188 ..       1     192 [. 0.90

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 6.9e-19
  PF01896.14  65 areltdaarreiadylnvv...........................................................kkkfvetlleeqddfsnaensk...............................................vlsklyprlDvnvtkgikhllrlpfsihpktgrvsvpldi 145
                 arelt++ar ++ +y +v                                                               +++ + e+++++ +++ +k                                               ++++ yprlD nv+k+ +hll++pf +hpktgr+++p+d+
  MMETSP0890-20130614|4632_1   2 ARELTNEARTAVINYCSVSrksdascgddlswpmhpslqraydilepifeqdiisgghgqghlaepelwtqllqncnlPTDIAQQIAEHWSSHTSTPIAKfhglkelivdaktapklyntstfalnnkkskvansdqianklwkynlIFKYIYPRLDENVSKQRNHLLKAPFAVHPKTGRICIPFDP 188
                 799*************999*********************99999999999999999999999999999999999999777777777777777777666688889999999999999999999999999999999999999*******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 1327.98
//
Query:       MMETSP0890-20130614|4636_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.5e-128  425.2   0.0   7.7e-128  425.0   0.0    1.0  1  PF01218.13 Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> PF01218.13  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.0   0.0  5.6e-132  7.7e-128       2     295 ..      77     376 .]      76     376 .] 0.96

  Alignments for each domain:
  == domain 1    score: 425.0 bits;  conditional E-value: 5.6e-132
                 HHHHHHHHHHHHHH---GGGS.SS--EEE-----------BEE------EEE--EE---B-----HHHHHHTGGG-TT-..........-EEEE-EEEEEEESSTTS-EEEEEEEEEEES----EEEEEB----EEE-SS--TT---HHHHHHHHHHHTT-TTHHHHHHHHHHHHTEEGGGTEE---------SB-SS-HHHHHHHHHHHHTTHHHHHHHHHHTTTTS---HHHHHHHHHH---HHHHHHHT-------------HHHHGGGS-SEEE--TT-------HHHHHHHHHHS---- CS
  PF01218.13   2 kveellkelqdeivealealdgkakfkedewereegGgGisrvleeGkvfEkagvnvsvvsgellpeaasakraelaga..........kfeaagvslviHpknPlvPtvhlnvRlfvaekegeekawWfGGGaDltPlylfeedakhfhktlkeacdkfdeelyprfkkwcDeYFylkhRkeaRGvGGiffddlnekdfeksfafvksvgeafleaylpivekrkdkeyteeerefqllrRgrYvEfnLvyDrGtkfGlqtggrtesilmslPplakWeyklepeegseeakllevllkprdw 295
                 ++e++l++ q +i++a+++ldg+a+f++d+w+re+gGgGis+vl+eG+vfEkag+++svv+ge++ ea +a+ ++  ++          +f+a+g+s v+HpknP++Pt+h+n+R+f    e+   +wWfGGG+D+tP+ylfe+d+khfh ++k++cdk+d+e+yp+fkkw+D+YF +khR+e+RG+GGiffddln++d e +f+f+k++++++++ay+piv+kr d+e+t+e++++q+lrRgrYvEfnLvyDrGt fGl+tggr+esilmslP++a+Wey +ep+++s+ea++l+ +++pr+w
  MMETSP0890-20130614|4636_1  77 RMEAMLRAGQLQITDAIAELDGEATFSQDAWTRENGGGGISMVLKEGRVFEKAGCSLSVVYGEMPAEALQAATERGVDRaagmkpgekvPFFACGLSSVMHPKNPMAPTMHFNYRYF----ETDGGVWWFGGGTDITPSYLFEDDMKHFHGAYKNTCDKHDPEFYPKFKKWADNYFLIKHRGETRGLGGIFFDDLNDRDPELIFNFAKDCVDTVVPAYVPIVAKRCDSEFTQEQKQWQQLRRGRYVEFNLVYDRGTVFGLKTGGRIESILMSLPETARWEYCHEPKPDSPEAEILDCFKNPREW 376
                 7999**************************************************************99999887774444555666777****************************....66789********************************************************************************************************************************************************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.45s 00:00:01.10 Elapsed: 00:00:00.63
# Mc/sec: 1430.21
//
Query:       MMETSP0890-20130614|4644_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-68  228.7   7.8      9e-68  227.8   5.4    1.3  1  PF04142.10 Nucleotide-sugar transporter
    1.4e-07   31.4  19.9    4.3e-07   29.9   0.6    2.7  3  PF00892.15 EamA-like transporter family
    1.1e-06   27.6   8.8    1.6e-06   27.1   6.1    1.3  1  PF08449.6  UAA transporter family
    4.8e-06   26.6   0.8    4.8e-06   26.6   0.5    2.9  3  PF13536.1  Multidrug resistance efflux transporter
     0.0072   15.8   1.3     0.0072   15.8   0.9    3.0  2  PF03151.11 Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   5.4   3.3e-71     9e-68       9     238 .]     123     374 ..     119     374 .. 0.92

  Alignments for each domain:
  == domain 1    score: 227.8 bits;  conditional E-value: 3.3e-71
  PF04142.10   9 eilkepsdtlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkeseaekkrea...................eenivlGlvavlvacllsgfAgvYfEKiLKesnesiwirNiqlallgilfalltlll.kdgekikekg..ffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgallV 238
                 + +++p++ lK +vPal+Y +qNnl+yva+ +ldaaty+v+yq ki+   ++svllL+rkLs  +W+ + ll +gv +vq++ +++e ++ ++                    ++  ++G++av++a ++s++AgvYfEKiLK++ + +w rN+qla+ ++l++ + l + ++g +i      ff+Gy++++wl ++++a+gGl+v  v+kyaD ++k +a   +ivls+++s++lfdf+++ lf+ g + V
  MMETSP0890-20130614|4644_1 123 SAWEKPREALKTSVPALLYLVQNNLQYVAVTYLDAATYTVSYQTKIVWSGILSVLLLSRKLSLHKWLGIALLAVGVGVVQIAGTQAEDSDLSAKedlsnpakdqinqksidvaHTLRLVGMTAVITAAMVSALAGVYFEKILKGARVGLWTRNLQLAFYSVLVGYIKLATsAEGLRIRSGEltFFHGYTRLTWLCIATNAFGGLLVGTVIKYADAVMKDVALGCSIVLSSLISTILFDFQLNSLFIAGITAV 374
                 5799*****************************************************************************9888843333333578*************97656669*************************************************7651567777654366***************************************************************999876 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.6   1.6e-10   4.3e-07      52     124 ..     130     201 ..      83     203 .. 0.79
   2 ?    0.6   0.3      0.18     5e+02      11      68 ..     229     287 ..     227     295 .. 0.67
   3 !    7.2   7.3    0.0016       4.4      19     123 ..     275     380 ..     251     382 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.6e-10
  PF00892.15  52 dilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                 ++l   + +ll  ++ + l++ a+++++a++ ++   +  v++ +lsvlll  kl+l ++lgi+l  +Gv ++
  MMETSP0890-20130614|4644_1 130 EALKTSVPALL-YLVQNNLQYVAVTYLDAATYTVSYQTKIVWSGILSVLLLSRKLSLHKWLGIALLAVGVGVV 201
                 44444444555.367789***************************************************9876 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.18
  PF00892.15  11 kkllesvspltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgy 68 
                 +k +   ++l +++++ +i ++ + +l+ +++ +  +  + + +   l l++ ++++gy
  MMETSP0890-20130614|4644_1 229 QKSIDVAHTLRLVGMTAVITAAmVSALAGVYFEKILKGARVGLWTRNLQLAFYSVLVGY 287
                 56677788899999999999988888888888777555555555555555555555554 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0016
  PF00892.15  19 pltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                  l++++y  l++ i l+  +  l+ ++ +l+  + +  l  l++ ++++g ll  + +k+ +a+   + +  + v++ l+s +l+  +l+   ++gi  ++ +v+l
  MMETSP0890-20130614|4644_1 275 NLQLAFYSVLVGYIkLATSAEGLRIRSGELTFFHGYTRLTWLCIATNAFGGLLVGTVIKYADAVMKDVALGCSIVLSSLISTILFDFQLNSLFIAGITAVIYAVFL 380
                 688999*******999999999999997788888999******************************************************************998 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   6.1   5.9e-10   1.6e-06      69     295 ..     136     381 ..      62     385 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.9e-10
   PF08449.6  69 livalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv....................Gilllvlallldallgavqeklykkygkss....kemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillk 295
                 + ++l+++ + l++ a  y++  t+ +   +k++   il+vl+l ++ sl++ l + l+++Gv +  +a ++ ++s+ + +e  +                     G++ ++ a +++al g + ek++k           ++ fys l++ + +  ++      +  ++ ++++ h ++ +  l++  t ++g   v ++i+  +a++  + +    ++s l+S +lF+ +l +  + G++ V+ +++l+
  MMETSP0890-20130614|4644_1 136 VPALLYLVQNNLQYVAVTYLDAATYTVSYQTKIVWSGILSVLLLSRKLSLHKWLGIALLAVGVGVVQIAGTQAEDSDLSAKEDLSNpakdqinqksidvahtlrlvGMTAVITAAMVSALAGVYFEKILKGARVGLwtrnLQLAFYSVLVGYIKLATSAEG----LRIRSGELTFFHGYTRLTWLCI-ATNAFGGLLVGTVIKYADAVMKDVALGCSIVLSSLISTILFDFQLNSLFIAGITAVIYAVFLY 381
                 457889999*****************************************************99999998887777766654433367999**************************************87665443344666777777777766666666....3334444444444433333333.3667888899999999999999999999999******************************98 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.5   1.8e-09   4.8e-06      42     110 ..     139     207 ..     108     210 .. 0.87
   2 ?   -1.3   0.1      0.82   2.2e+03      64      84 ..     242     262 ..     231     285 .. 0.61
   3 ?    2.7   4.6     0.047   1.3e+02      29     103 ..     304     380 ..     271     386 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.8e-09
   PF13536.1  42 llgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqveeae 110
                 ll+  ++  l+ +A+ ++ + + +  +++ +++  +ls+ll+ +kl+++ +l ++l+++Gv ++q+  ++
  MMETSP0890-20130614|4644_1 139 LLYL-VQNNLQYVAVTYLDAaTYTVSYQTKIVWSGILSVLLLSRKLSLHKWLGIALLAVGVGVVQIAGTQ 207
                 5544.88889999*****965999*****************************************98766 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.82
   PF13536.1  64 aaitaltpllaallslllfke 84 
                  ++++ t + ++ l+ ++f++
  MMETSP0890-20130614|4644_1 242 GMTAVITAAMVSALAGVYFEK 262
                 233444555555555555544 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.047
   PF13536.1  29 lkr.npllwlllagllgfglfyalltlAakhapg.lva..aitaltpllaallslllfkeklpkrellaslliliGvvl 103
                 l++ ++ ++l++ ++     ++ +l+++     +  v+   +++++++l +l+s++lf  +l+  ++  +  ++ +v+l
  MMETSP0890-20130614|4644_1 304 LTFfHGYTRLTWLCIATN--AFGGLLVGTVIKYAdAVMkdVALGCSIVLSSLISTILFDFQLNSLFIAGITAVIYAVFL 380
                 444477788888888776..4444555544444434443578999*********************9999999999988 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   2.7e-06    0.0072      83     148 ..     133     198 ..      90     200 .. 0.91
   2 ?    1.9   7.2      0.05   1.4e+02       1     152 [.     242     382 ..     242     383 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.7e-06
  PF03151.11  83 llllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGv 148
                    ++++l+ ++n ++++ +    + t++v    k v   +lsv+++++k+++ ++lG+++  +Gv
  MMETSP0890-20130614|4644_1 133 KTSVPALLYLVQNNLQYVAVTYLDAATYTVSYQTKIVWSGILSVLLLSRKLSLHKWLGIALLAVGV 198
                 556899*********************************************************998 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.05
  PF03151.11   1 Gfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafll.nisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                 G+ +++ a++++al  v+++++l+ + + +    +l+l +y+ +v  i l   +   eg ++   +  ++         ++  l + +++  ++  ++   +++ + +++ +va  +  vl  ++s i+f+ +++ l i G+   +  v+lY 
  MMETSP0890-20130614|4644_1 242 GMTAVITAAMVSALAGVYFEKILKGA-RVGLWTRNLQLAFYSVLVGYIKL---ATSAEGLRIRSGELTFF--------HGYTRLTWLCIATNAFgGLLVGTVIKYADAVMKDVALGCSIVLSSLISTILFDFQLNSLFIAGITAVIYAVFLYG 382
                 67788999999999999999999997.33333444444444444444433...34457777444444444........44555555555444330344456789999*********************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.66
# Mc/sec: 1535.85
//
Query:       MMETSP0890-20130614|4646_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-21   75.8   0.2    1.2e-20   74.3   0.1    1.7  1  PF12697.2  Alpha/beta hydrolase family
    1.9e-15   56.9   0.0    4.2e-15   55.8   0.0    1.5  1  PF00561.15 alpha/beta hydrolase fold
    2.6e-08   33.5   0.0    1.1e-07   31.5   0.0    2.0  1  PF12695.2  Alpha/beta hydrolase family
      0.007   16.0   0.0      0.013   15.1   0.0    1.5  1  PF12146.3  Putative lysophospholipase
  ------ inclusion threshold ------
      0.078   12.6   0.1        0.2   11.3   0.1    1.6  1  PF05002.10 SGS domain
        0.1   10.9   0.0       0.25    9.6   0.0    1.6  2  PF05448.7  Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   5.1e-24   1.2e-20       2     216 ..      88     395 ..      87     401 .. 0.73

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 5.1e-24
                 EE------------HHHHHHT.TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--E........EEE--------HHHHHH----.EEEEEEE------STT...........................---TTHHHHHHHHHH----....--H..HHHHH-...----HHHH........HH--GGGG....GG..........................................................................------HHHHTT-.-S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS CS
   PF12697.2   2 vllHGlggsaeswrplaeaLa.agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpv........vlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...........................alrpagpsllrrllagraaalrdlaarafarlfd...gdelealv........radaaalaellraa..........................................................................lldadlrealarl.dvPvlviageaDrvvppeearrlaealpgarvvvlpgagHl 216
                 ++lHG++g + ++ + a ++    +rvv++D++G+GrS ++ +   +   +l++dl+ l +++  + +         ++G S+G  +ala+a++ p  +r ++l ++ + ++ +                                             + ++d   ++++++++   +d+ ++ v        +                                                                                       ++++dl ++l+r+ ++P+  ++g++D+++pp +a ++   +p  ++  +pgagH+
  MMETSP0890-20130614|4646_1  88 LFLHGGPGAG-CFPRHAAFFNpTKWRVVLLDQRGCGRSIPCGSLIGNETPNLLQDLETLRKHIFKNSIhpdsqqwdCVLGGSWGSTLALAYAQAFPCAIRTIILRGVCAMRTKEihwlfspmggaatlaphawrdfaslvkQ----------------DENNEDAVLDGYYQMLAngdDDTRARAVrswmtwesQ------------VsalairrpailltgpidnknqinlsrtsnkktanplnpsaaylteleatnqrppykgspqplltchysvhrgffDQESDLFANLHRIqHIPTIAVQGGNDHICPPTTAFEFYSIWPELELRLVPGAGHS 395
                 8******877.*********648******************9977777788999********999777777888889**************************999999666667788888876554333333333333331................2223333334444444211122222222222222220............1333333344444444444444444444455555555555666666666699999999999999999999*****999999*******88***************************************7 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.8e-18   4.2e-15       1     216 [.     111     396 ..     111     400 .. 0.89

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.8e-18
                 SEEEEEE--------E...S.GGGGSHHHHHHHHHHHHHH......STSSS..EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--..................................................................HHSHCSHSTTCHC..HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT.-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHCSH CS
  PF00561.15   1 fdviglDlrGvgySspaggpelphyttddlardleavlda......lglkk..ltlvGhSmGGmialayaaeypdrvkamvllgtva..................................................................vlsdglssdvlnr..gstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwdvtetlkt.ilvptlvisgtdDplvpykaseklaelipksqlvvidgpgHla 216
                 ++v++lD+rG+g+S p     l  + t +l  dle+++++      +++ +   +++G+S+G+++alaya+ +p  ++ ++l g +a                                                                  + s ++  +++ +    t +  ++n  + ls++ ++ +++  ++ +++l++ +++ ++r++++   ++  t+ ++ +++     d+++d+++ l++  ++pt+ ++g++D++ p+ ++  +   +p  +l++++g+gH  
  MMETSP0890-20130614|4646_1 111 WRVVLLDQRGCGRSIP--CGSLIGNETPNLLQDLETLRKHifknsiHPDSQqwDCVLGGSWGSTLALAYAQAFPCAIRTIILRGVCAmrtkeihwlfspmggaatlaphawrdfaslvkqdennedavldgyyqmlangdddtraravrswmtWESQVSALAIRRPaiLLTGPIDNKNQIN-LSRTSNKKTANPLNPSAAYLTE-LEATNQRPPYKGSPQPLLTCHYSVHRG---FFDQESDLFANLHRiQHIPTIAVQGGNDHICPPTTAFEFYSIWPELELRLVPGAGHSQ 396
                 89*************9..467778889999999999998855555568888988*****************************************************************************************99999999988888888888888766777777777777.6777777777777789999999.8999999999999999***********...99999999999999788*******************999*****************76 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     5e-11   1.1e-07       3     142 .]      88     395 ..      86     395 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 5e-11
   PF12695.2   3 vlvhGaggdssayeplaealakrgfavvavdlpghgas........egaa....aakrvl....aadll....dleri.ilvGhSlGGgvalelag........................................................................rddrvkglvllapf....pdgedlakltl.....................................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                 +++hG+ g    + + a ++   +++vv++d++g g+s        ++++    +++++     +   +    d +++ +++G S G+++al++a+                                                                        r + v++ + ++++              +                                                                                     p+ +++G +D+++pp+ a ++++ +p+  el +++ga+H+
  MMETSP0890-20130614|4646_1  88 LFLHGGPGA-GCFPRHAAFFNPTKWRVVLLDQRGCGRSipcgsligNETPnllqDLETLRkhifK---NsihpDSQQWdCVLGGSWGSTLALAYAQafpcairtiilrgvcamrtkeihwlfspmggaatlaphawrdfaslvkqdennedavldgyyqmlangdddtRARAVRSWMTWESQvsalA---------IrrpailltgpidnknqinlsrtsnkktanplnpsaaylteleatnqrppykgspqplltchysvhrgffdqesdlfanlhriqhiPTIAVQGGNDHICPPTTAFEFYSIWPE-LELRLVPGAGHS 395
                 677776643.34667888999999*************9997775442222555422222244442...0445677888799*************************************************************998888888888888888888875542233333333333222220.........12233344555555555566777778888999999999999999999999**********************************************************99997.7**********6 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.8e-06     0.013       2      58 ..      70     125 ..      69     147 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.8e-06
   PF12146.3   2 tklfyrrwlpeeppkaavvlvhglaEhsgrYqelaedLaaqGyavyayDhrGhGkse 58 
                 ++l+y     ++p  ++ +++hg+   +g + + a  ++   ++v+ +D+rG G+s 
  MMETSP0890-20130614|4646_1  70 HELYYEIRGTSKPDARTALFLHGG-PGAGCFPRHAAFFNPTKWRVVLLDQRGCGRSI 125
                 677777777777655555556665.77999**************************5 PP

>> PF05002.10  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.7e-05       0.2       4      53 ..     219     265 ..     216     271 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.7e-05
                 XXXXXXXXXXXXXXXXXXX----HHHHHHHHT----CHHHHHHHHHH..CT- CS
  PF05002.10   4 WdklaskkekekkkdeeeeseelnklfkklYknadedtkrammKsfv..eSq 53 
                 W ++a    +  k+de++e++ + +   ++ +n+d+dt+   ++s++  eSq
  MMETSP0890-20130614|4646_1 219 WRDFA----SLVKQDENNEDA-VLDGYYQMLANGDDDTRARAVRSWMtwESQ 265
                 66666....455666666665.555567899***************733555 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.58   1.3e+03     178     193 ..     163     178 ..     157     188 .. 0.85
   2 ?    9.6   0.0   0.00011      0.25     256     304 ..     349     396 ..     338     407 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.58
                 --B-------HHHHHH CS
   PF05448.7 178 vvlGasqGGalalava 193
                  vlG+s G +lala a
  MMETSP0890-20130614|4646_1 163 CVLGGSWGSTLALAYA 178
                 589**********987 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00011
                 HHGGG--S-EEEEE----SSS-HHHHHHHHHH--SSEEEEE-TT----- CS
   PF05448.7 256 nlAkrikapvllavgLeDkvcpPstvfaaynkleteKelkvyeeyahea 304
                 nl +  + p+  + g +D++cpP+t f  y  +  e el++ +  +h +
  MMETSP0890-20130614|4646_1 349 NLHRIQHIPTIAVQGGNDHICPPTTAFEFYSIW-PELELRLVPGAGHSQ 396
                 5555556788888899************99755.567777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.81
# Mc/sec: 1275.10
//
Query:       MMETSP0890-20130614|4653_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   30.5   0.2     0.0052   16.6   0.0    2.2  2  PF13516.1  Leucine Rich repeat
    0.00028   20.4   0.1       0.52   10.6   0.0    2.4  2  PF13504.1  Leucine rich repeat
     0.0027   17.1   0.1       0.11   11.9   0.1    2.1  2  PF12799.2  Leucine Rich repeats (2 copies)
     0.0031   17.1   0.0     0.0075   15.8   0.0    1.6  1  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.012   15.1   0.2        2.8    7.5   0.0    2.8  2  PF00570.18 HRDC domain
      0.016   15.0   0.1        1.6    8.9   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
      0.082   12.3   0.9      0.087   12.2   0.6    1.1  1  PF04528.8  Adenovirus early E4 34 kDa protein conserved region
       0.87    9.5   3.7        2.2    8.2   2.2    1.9  2  PF04324.10 BFD-like [2Fe-2S] binding domain


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.2e-05      0.14       1      24 []      14      38 ..      14      38 .. 0.91
   2 !   16.6   0.0     3e-06    0.0052       1      24 []      40      64 ..      40      64 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.2e-05
   PF13516.1  1 lknLtsLdLsnNq.igdeGlsaLan 24
                +++Lt Ld++ +  ++d  + a+a+
  MMETSP0890-20130614|4653_1 14 CPSLTQLDVGLCEnLTDAAIVAIAE 38
                9**********955*******9985 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3e-06
   PF13516.1  1 lknLtsLdLsnNq.igdeGlsaLan 24
                +++Lt Ld+s ++ ++d  + a+a+
  MMETSP0890-20130614|4653_1 40 CSSLTQLDVSECKnLTDAAIVAIAK 64
                9***********88********996 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0027       4.6       1      15 [.      15      30 ..      15      33 .. 0.89
   2 !   10.6   0.0   0.00031      0.52       1      15 [.      41      56 ..      41      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0027
   PF13504.1  1 pnLkeLdLsgnr.Lts 15
                p+L++Ld+  ++ Lt+
  MMETSP0890-20130614|4653_1 15 PSLTQLDVGLCEnLTD 30
                79*********88985 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00031
   PF13504.1  1 pnLkeLdLsgnr.Lts 15
                ++L++Ld+s ++ Lt+
  MMETSP0890-20130614|4653_1 41 SSLTQLDVSECKnLTD 56
                58*********98985 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0054       9.3      21      32 ..      12      23 ..       5      38 .. 0.81
   2 !   11.9   0.1   6.7e-05      0.11       2      38 ..      16      56 ..      15      64 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0054
   PF12799.2 21 anLpnLktLnLs 32
                +++p+L++L++ 
  MMETSP0890-20130614|4653_1 12 KKCPSLTQLDVG 23
                79*******975 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 6.7e-05
   PF12799.2  2 nLevLdLsnN.nIkd..lppel.anLpnLktLnLsnNp.isd 38
                +L+ Ld   + n++d  + + +  n+++L++L++s ++ ++d
  MMETSP0890-20130614|4653_1 16 SLTQLDVGLCeNLTDaaIVA-IaENCSSLTQLDVSECKnLTD 56
                56666655443566555778.7469************54887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.4e-06    0.0075      20      59 ..      10      51 ..       4      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.4e-06
   PF13855.1 20 aFkglsnLkvLdLs.gnnlksispea.fkgLpsLreLnLsgN 59
                + k++++L+ Ld + + nl+     a  +++ sL++L++s +
  MMETSP0890-20130614|4653_1 10 VAKKCPSLTQLDVGlCENLTDAAIVAiAENCSSLTQLDVSEC 51
                5689***************976654337**********9976 PP

>> PF00570.18  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0017       2.8      27      40 ..       2      15 ..       1      19 [. 0.91
   2 ?    3.7   0.1     0.025        43      27      52 ..      28      54 ..      28      64 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0017
                S-HHHHHHHHHH-- CS
  PF00570.18 27 lsdktLleiAeklP 40
                l+dk+Lle+A+k+P
  MMETSP0890-20130614|4653_1  2 LTDKVLLEVAKKCP 15
                79***********9 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.025
                S-HHHHHHHHHH.---SHHHHTT---- CS
  PF00570.18 27 lsdktLleiAek.lPttleeLlriegv 52
                l+d+++++iAe+    t  ++++++++
  MMETSP0890-20130614|4653_1 28 LTDAAIVAIAENcSSLTQLDVSECKNL 54
                578888888888444555555555554 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.012        20       1      22 []      16      43 ..      16      43 .. 0.83
   2 ?    8.9   0.0   0.00094       1.6       1      14 [.      42      56 ..      42      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
                TESEEEETSS.BCBC.....HHHHHHHH CS
  PF00560.28  1 nLeeLdLsgN.nlts.....lppslsnL 22
                +L+ Ld+  + nlt+     + +++s+L
  MMETSP0890-20130614|4653_1 16 SLTQLDVGLCeNLTDaaivaIAENCSSL 43
                6999**********87888877777765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00094
                TESEEEETSS.BCBC CS
  PF00560.28  1 nLeeLdLsgN.nlts 14
                +L+ Ld+s + nlt+
  MMETSP0890-20130614|4653_1 42 SLTQLDVSECkNLTD 56
                699**********97 PP

>> PF04528.8  Adenovirus early E4 34 kDa protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   5.1e-05     0.087      68     111 ..      21      64 ..       4      67 .] 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.1e-05
   PF04528.8  68 evvvlkgllnnlvvlvCksCaelseisvrcCarrtrellrralk 111
                 +v +++ l++  +v + ++C++l+++ v+ C + t + +  ++k
  MMETSP0890-20130614|4653_1  21 DVGLCENLTDAAIVAIAENCSSLTQLDVSECKNLTDAAIVAIAK 64 
                 566899999************************99998887766 PP

>> PF04324.10  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   3.5e+03      20      29 ..       9      19 ..       3      20 .. 0.55
   2 ?    8.2   2.2    0.0013       2.2       6      40 ..      25      66 ..      24      67 .] 0.80

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2
  PF04324.10 20 e.aegapslee 29
                e a+++psl +
  MMETSP0890-20130614|4653_1  9 EvAKKCPSLTQ 19
                23466777765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0013
  PF04324.10  6 CegVtegeIrdaire.....aegapsleeikrltga.....GrgC 40
                Ce+ t++ I +  ++          ++ e k+lt a     +++C
  MMETSP0890-20130614|4653_1 25 CENLTDAAIVAIAENcssltQL---DVSECKNLTDAaivaiAKNC 66
                **********888666654433...69999999999888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.72
# Mc/sec: 222.99
//
Query:       MMETSP0890-20130614|4652_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-07   29.3   0.0    3.9e-05   23.2   0.0    2.7  3  PF05172.8  Nup53/35/40-type RNA recognition motif
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.022   14.2   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
       0.14   11.8   0.0       0.29   10.8   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF05172.8  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.8   8.1e+03      29      37 ..     129     137 ..     125     140 .. 0.75
   2 ?    3.0   0.0     0.016        74       6      18 ..     171     183 ..     166     187 .. 0.80
   3 !   23.2   0.0   8.5e-09   3.9e-05      23      91 ..     207     262 ..     203     274 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.8
   PF05172.8  29 kfGeiledv 37 
                 +fG+i++ +
  MMETSP0890-20130614|4652_1 129 RFGTIMNGM 137
                 789998765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.016
   PF05172.8   6 sdtsvivFGfpes 18 
                  + ++ vFGf+ +
  MMETSP0890-20130614|4652_1 171 FERWILVFGFSSQ 183
                 578*******875 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 8.5e-09
   PF05172.8  23 vlehFskfGeiledvqvlklgkglnpkpiptgenwvkltYksessaskAlqengtilngslivgvsysk 91 
                 vl +F  fG i+++              i +++nw  l+Y+s  +a+kA+q+   +++g  ivg  ++ 
  MMETSP0890-20130614|4652_1 207 VLDEFRSFGDIIDH-------------DIGNSGNWCFLRYASTWQAEKAVQHGALLVEGCGIVGALRVT 262
                 78899999999999.............699******************************999988775 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.9e-06     0.022      17      57 ..     209     244 ..     206     256 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.9e-06
                 HHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHH CS
  PF00076.17  17 elFskfGpiesiklvrdetgrskgfafVeFeseedaekAle 57 
                 + F+ fG+i + ++ +     s + +f +++s  +aekA++
  MMETSP0890-20130614|4652_1 209 DEFRSFGDIIDHDIGN-----SGNWCFLRYASTWQAEKAVQ 244
                 6799999996666666.....9******************9 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.4e-05      0.29       3      44 ..     209     247 ..     207     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.4e-05
   PF13893.1   3 klfskfGkverikifrkkggqAfvefdtveaArkakeylngv 44 
                 + f  fG+++++ i  ++ + +f  ++++ +A+ka++  +g+
  MMETSP0890-20130614|4652_1 209 DEFRSFGDIIDHDIGNSG-NWCFLRYASTWQAEKAVQ--HGA 247
                 67899*********9766.*****************9..665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.86
# Mc/sec: 1005.91
//
Query:       MMETSP0890-20130614|4655_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 515.04
//
Query:       MMETSP0890-20130614|4660_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-15   55.9   5.1    3.7e-15   55.9   3.6    2.0  2  PF01066.16 CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> PF01066.16  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   3.6   2.7e-19   3.7e-15       1      95 [.      25     113 ..      25     134 .. 0.85
   2 ?    0.1   0.1     0.067   9.2e+02      19      43 ..     160     182 ..     145     185 .. 0.68

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 2.7e-19
  PF01066.16   1 flllpnivtllrlafalvaavllldgqplllallllllaailDgvDGkvARrtnqtsalGallDsliDnvtrlllllwlyvallltvpkvlvsll 95 
                 fl++pn+++++r+++ lv +++++  ++  +a+  +++++  D +DG+ A+++nq s +G +lD ++D+++++ ll      l +++p+++ +++
  MMETSP0890-20130614|4660_1  25 FLYVPNLIGYARVFL-LVGFYVFALTRW-EVAICAYIASFAGDLFDGYFAKKLNQCSTFGMILDMVTDRIATTGLL----SILSIIYPRYAIIFT 113
                 6789***********.888888888888.8*******************************************999....444444444443333 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.067
  PF01066.16  19 aavllldgqplllallllllaailD 43 
                 +a+l ++ +  l+ + l++l+++ D
  MMETSP0890-20130614|4660_1 160 FAYLCVSAE--LTYVALYILYFVSD 182
                 344444443..57888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 1017.40
//
Query:       MMETSP0890-20130614|4666_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   24.9   0.2      5e-05   23.3   0.2    1.7  1  PF00080.15 Copper/zinc superoxide dismutase (SODC)
    0.00096   18.8   0.2     0.0012   18.5   0.1    1.1  1  PF00894.13 Luteovirus coat protein


Domain annotation for each model (and alignments):
>> PF00080.15  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   7.3e-09     5e-05      11     142 .]      27     142 ..      10     142 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 7.3e-09
                 -EEEEEEEEESSTTS-EEEEEEEB----...........--B--EEE-----.SS--TT---B-----------GGCS--------B..-------BEEEEECSS-BHH---CHH--EEEEE-----THHCC------EEEE-EE CS
  PF00080.15  11 kvkGtvtftqksgesgvevtvelkgltp...........gkhgfhiHekgdcesngcksagghynpekkkhggpsdekrhaGDlgni..evdadGeakleitddrlslkgeesiiGrslvihageddltsqptGnaGarlaCgvI 142
                 +v Gtv+++ ++  ++ +  ++l+g +p           +  g+hiH+  +c     + a ghy  +  + ++p         +++i  ++d++G+++ +++ +  +  +e++i+G ++viha  d          G+r+aC++I
  MMETSP0890-20130614|4666_1  27 QVDGTVYISTSE--TTQSGLYSLEGTDPqcesgadlsiaNSCGVHIHAGNSC----TDDALGHYYMDPIT-EDP---------WTTIsyTADSNGSTSGSFQVN--TGGSESDILGLAFVIHAF-D----------GSRIACAII 142
                 588999999999..44788899999988899999999989************....567999**666622.223.........555522566777666664444..334455***********9.5..........7******98 PP

>> PF00894.13  Luteovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.8e-07    0.0012      48     129 ..      31     114 ..       2     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.8e-07
  PF00894.13  48 lefiseAsstssGsiaye.lDphckksalaslinkfsitksgsktftakaingkewkdssedqf.ailykgngkssvAGsfrit 129
                  ++is   +t+sG  ++e  Dp+c+  a+ s+ n+  +   + ++ t +a++   +   +ed + +i y ++++ s+ Gsf++ 
  MMETSP0890-20130614|4666_1  31 TVYISTSETTQSGLYSLEgTDPQCESGADLSIANSCGVHIHAGNSCTDDALGHYYMDPITEDPWtTISYTADSNGSTSGSFQVN 114
                 579**********9999868******************************************863699*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 503.94
//
Query:       MMETSP0890-20130614|4669_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-16   58.2   0.0    7.4e-16   57.8   0.0    1.1  1  PF01042.16 Endoribonuclease L-PSP
  ------ inclusion threshold ------
       0.18   11.2   0.8        0.3   10.5   0.6    1.3  1  PF06753.7  Bradykinin


Domain annotation for each model (and alignments):
>> PF01042.16  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.1e-19   7.4e-16      38     120 ..      63     143 ..      42     144 .. 0.91

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 1.1e-19
                 -SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSS-S.-EEEEEE-SB-GGG-SEEEEEEEE CS
  PF01042.16  38 eedveeqtrqalenlkavLaaagaslsdvvkvtvFladiedfaevnevyneafdeeksaParsavevaaLpkgakvEieaiav 120
                 ++d++ qt+++l++++a+L++++   s+ + + +Fl+d++d++++n+ y++++++    P r +v++ +L++g ++Ei+a a+
  MMETSP0890-20130614|4669_1  63 NKDITGQTEEVLAKMDAILNEVNIPRSNLLSMWIFLNDMSDYNTMNKTYDKWVQAV-DKPTRLCVQA-TLDPGCLIEIRASAA 143
                 689*****************************************************.59*******5.7999********987 PP

>> PF06753.7  Bradykinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   4.3e-05       0.3       3      12 ..      33      42 ..      32      44 .. 0.96

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.3e-05
   PF06753.7  3 RRPaGFTPFR 12
                RR +GF PFR
  MMETSP0890-20130614|4669_1 33 RRAPGFKPFR 42
                9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.43s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 518.04
//
Query:       MMETSP0890-20130614|4662_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-37  127.3   0.4    9.5e-37  126.7   0.3    1.3  1  PF00109.21 Beta-ketoacyl synthase, N-terminal domain
    5.5e-27   93.8   0.0    1.8e-26   92.2   0.0    1.8  2  PF02801.17 Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00109.21  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.3   1.4e-40   9.5e-37       2     255 .]      74     319 ..      73     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 126.7 bits;  conditional E-value: 1.4e-40
                 --EEEEEEE---SS-SSHHHHHHHHH------ECCH.....HHHTT.-S--EE---SS........S-GGGG--HHHHC...CS-HHHHHHHHHHHHHHHH----....HTTGCEEEB------...HH.HHHCCCH.---.-TTS-TTHHHHHS----CCCHHTTTT-----BEEE-GGGHHHHHHHHH.HHHH----SEEEE--------HHHHHHHHCTT.-S-ST..SGGGS--TTB...--------.--EEEEEEHHH CS
  PF00109.21   2 epvaivGmgcrfpggvgpeefwelllegrdaisefpadrwdaselydpdsraageiysreggfldiddfdaaffgispreaeamDpqqrlaleaawealedagldpeslegsdrvgvfiGsgig...dy.aelqaldeaggkprkvspyatgaalpsviagrisyalglrGpsvtvdtacsSslvalhaavqslregeadlalaGGvelllspetfaafsaag.llspd..grckafdpfa...dGfvlGEGvGavllkrlsea 255
                 ++v+i+Gmg+    g++ +e+ ++l+ g+++i+ f++   + +el   +s++ g+ + +           + ++ i+ + a+ m   +++a   + +a++dagl pe  e+++r g ++G g +   d  ++l+a  e+  k ++v py ++ ++ s++++ ++ a++lrG s+++++acs+++  + +++++++  + d++ +G+ e l ++++++ f+ +g l+s+   +++ a+++f+   dGfv++ G+G+v+l++l++a
  MMETSP0890-20130614|4662_1  74 RRVVITGMGLCSCLGNTLDEVSDSLYHGKSGIT-FNE---KYAEL-GMKSQVCGRPKIDL----------NDVPCIDRKSARFMGDNAKYAFISMHDAIADAGLAPEYYENNPRAGGILGQGGTsipDVgETLEACAER--KLKRVGPYRVTRTMGSTVSAVLATAFKLRGCSYSISSACSTGAHCIGVGMEQIQLDKHDIVFCGAGE-LENWGSTVMFDGMGaLSSKYndEPTLASRAFDknrDGFVIAAGGGVVVLEELEHA 319
                 89*******************************.773...23333.45778888777742..........455555555555************************9878878*********99765334444444433..4799999888888*****************************77777777*****************.899***********555555888877777777777********999999999986 PP

>> PF02801.17  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.4   2.8e+03      20      43 ..     142     165 ..     133     166 .. 0.72
   2 !   92.2   0.0   2.6e-30   1.8e-26       1     118 [.     327     441 ..     327     442 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.4
                 --------HHHHHHHHHH--S-GG CS
  PF02801.17  20 tapngeaqarairkalaeagldpe 43 
                 +  n++ +   +++a+a+agl+pe
  MMETSP0890-20130614|4662_1 142 MGDNAKYAFISMHDAIADAGLAPE 165
                 55555556667999******9997 PP

  == domain 2    score: 92.2 bits;  conditional E-value: 2.6e-30
                 SEEE-----B-.-SS-SSS--------HHHHHHHHHH--S-..GGGECEEE----------HHHHHHHHHH--...TT..CEEE-GGGT----------HHHHHHHHHHH---B---TT- CS
  PF02801.17   1 yaviagsavnqdgaasnsltapngeaqarairkalaeagld..pedvdyveahGtGtplgDpiEaealkavfgekarkqplavgSvKsniGHleaAaGvaelikvvlalrhgvipptlnl 118
                 ya+i g+++++dg +   + ap+ge+ +r++r+al++a+    p++v+yv++hGt+tp+gD  E+ a+ +vf++ ++     +gS+Ks  GH+++ aGv e+i ++l++++g ++ ++n+
  MMETSP0890-20130614|4662_1 327 YAEITGYSATSDG-Y--DMVAPSGEGGERCMRDALSMAEQLggPKQVTYVNTHGTSTPVGDVKELTAIDRVFSDLGYY--PNIGSTKSLSGHALSVAGVHEAIYSMLMMERGFLAESINI 441
                 9**********99.5..677888***************98556*******************************9975..68*********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.77
# Mc/sec: 1521.84
//
Query:       MMETSP0890-20130614|4668_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-20   73.2   0.0    3.4e-20   72.8   0.0    1.2  1  PF13472.1  GDSL-like Lipase/Acylhydrolase family
    1.6e-11   44.4   0.0    2.7e-11   43.6   0.0    1.4  1  PF00657.17 GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   4.9e-24   3.4e-20       1     179 []      23     225 ..      23     225 .. 0.72

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 4.9e-24
   PF13472.1   1 valGDSitaGygap.....sgegyadrlaaq....lgagvevvnlgcsGattrdglarleadvla.l......laadpdlvtltlGgNDlgfg.drtdaslekyeanlaaildalreaa....pvllvgyppvlpadreppaaglrdaldalnealaeaAaay..gvtyvdlaaa.fadhegwdkdllapdglHPnaaGyaai 179
                 ++lGDS++ G g +     +g+++++r++++    lg ++e++ lg++G + +d+ ++l +++ + +      ++++ d+v+l++G ND+++       ++ ++ ++l ++ld++r+      +++l ++p  l   +ep   +    ++ ++++  ++A+a      +vd+ ++ + d+++ ++ l+a+dg+HPn+ Gy+++
  MMETSP0890-20130614|4668_1  23 LFLGDSLVTGIGGApadasEGPPLPRRVCRAlaqnLGVQIEWHALGLTGGDLDDMSQNLLPKLKQlIadandnDQKNFDVVVLMCGLNDFKYLaRGHVRTPWAFGQRLSTLLDDIRNEVgndcRIVLPALPVALASFQEPLKSYICFLANLWDKQKLRLADAShlSGGFVDFIDViSLDDSARQRTLVADDGVHPNEYGYEIW 225
                 79********984435554558888888885555799******************8888886666556778889******************6444556799999999999999987777764666666665555544443333333333344444444433312334555555533368899999999************98 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0     4e-15   2.7e-11       1     234 []      22     229 ..      22     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 4e-15
                 EEEE--CCCHT.--S-CCCSHHHHHHHHCCSCCHHHHHCTTEEEEE-------HH......HHHHHHHHHCCHHHHHHHHHH-ESEEEEE---TTT..ECE.SSSEEEHHHHHHHHHHHHHHHH.TTTEEEEEEEEEECCHHH.......HHHTHCCHH......HHHHHHHHHHHHHHH.....HHH..HHCTEEEEEHHHHHHHCHHHGGGHHHTCCCSSTTSB-CCCHHHHHHHH CS
  PF00657.17   1 ivafGDSltdg.ggdsngggwlaglanrltsalrlnarppgvdvfnrgisGrtsdgrlvqlesqalnllqelkllldkdskkspdlvtiqiGaNDllteslkntqnasvpevrdnlrslikrly.lngarlivlltfvltnlpplgqlpsarskkvdakgclerlneavadfnellkklaeqlrkdlv..keanvkyvDiysifqeldglqnpenssylfwDgfHptekghkavaeal 234
                 ++++GDSl+ g gg + + + +  l  r     r+ a++ gv++  ++  G t  g+l ++ ++ l  l +l  +  ++++k  d+v+++ G ND+  ++l   + +++  + ++l+ l++ ++ ++g      +++vl+ lp     + a++++ +++  +     +++ ++++  +la     d +  ++  v ++D+ s +++   +q+    + +  Dg+Hp+e g++++++++
  MMETSP0890-20130614|4668_1  22 VLFLGDSLVTGiGGAPADASEGPPLPRRV---CRALAQNLGVQIEWHAL-GLT-GGDLDDMSQNLLPKLKQLIADANDNDQKNFDVVVLMCGLNDF--KYLARGHVRTPWAFGQRLSTLLDDIRnEVGND----CRIVLPALP----VALASFQEPLKSYICF----LANLWDKQKLRLA-----DAShlSGGFVDFIDVISLDDSA--RQR----TLVADDGVHPNEYGYEIWSQHI 229
                 689********999999999999999999...56778888888877773.333.344433333334444556667899*****************9..9*************************999999....777777777....4555565555444433....4445666666666.....3221335566666666666655..444....46***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.47s 00:00:01.04 Elapsed: 00:00:00.84
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|4680_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-20   69.9   0.0      2e-19   68.9   0.0    1.5  1  PF00226.26 DnaJ domain
    1.4e-15   56.8   0.0    3.7e-12   45.8   0.0    2.3  2  PF01556.13 DnaJ C terminal domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   2.9e-23     2e-19       2      64 .]      53     110 ..      52     110 .. 0.97

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 2.9e-23
                 HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                 yY  Lgv ++a+ +eIk+a+r  +++ HPDk  +de    e fk++neAy+vLsd +k+a yd
  MMETSP0890-20130614|4680_1  53 YYTMLGVRPGATGDEIKRAFRTRSKTMHPDK-GGDE----EEFKKLNEAYSVLSDAQKKAAYD 110
                 9******************************.7777....99********************8 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0002       1.4       6      45 ..     176     214 ..     174     221 .. 0.91
   2 !   45.8   0.0   5.4e-16   3.7e-12       1      75 [.     239     317 ..     239     325 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0002
  PF01556.13   6 leislkeAllGgtvevptldgrkikvkippgtkpgeklri 45 
                 +++sl ++  G t++v   d+ + +v+i+pg+ +g+++r 
  MMETSP0890-20130614|4680_1 176 ITVSLDDCYQGRTISVSLGDE-QCRVRIEPGMGEGDIIRA 214
                 799*************99999.***************974 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 5.4e-16
  PF01556.13   1 dLiveleislkeAllGgt.vevptldgrkikvk...ippgtkpgeklrikgkGmpkkknsnerGdLivkvnvkfPkkls 75 
                 dL v+  i+l++Al G   ++++ ldg+ ++v+   ++++ ++g +  ++g+Gmp+k+ +++rG+L+v+v v fP++++
  MMETSP0890-20130614|4680_1 239 DLLVDASIPLADALGGAPrITLKRLDGTILRVNlapMGKVLRHGAVRALEGEGMPIKGMPSRRGRLFVRVFVLFPQTIE 317
                 89***************99**************99999*************************************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.47s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1397.87
//
Query:       MMETSP0890-20130614|4700_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.1   6.3      0.013   14.5   2.9    1.4  2  PF04641.7 Replication termination factor 2
       0.53   10.2  11.6       0.19   11.6   6.1    1.7  2  PF13945.1 Splicing factor, salt tolerance regulator
       0.54    9.6  17.7        1.1    8.7  12.3    1.4  1  PF06658.7 Protein of unknown function (DUF1168)
        0.6   10.0   8.3       0.23   11.3   4.1    1.5  2  PF14181.1 YqfQ-like protein
        3.6    7.2   7.1        6.1    6.5   4.9    1.3  1  PF08496.5 Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1     3e+03     236     236 ..      36      36 ..      12      60 .. 0.52
   2 ?   14.5   2.9   4.9e-06     0.013     185     238 ..      98     153 ..      65     174 .. 0.51

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.1
   PF04641.7 236 k 236
                 +
  MMETSP0890-20130614|4700_1  36 A 36 
                 1 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.9e-06
   PF04641.7 185 ekakkkkkkkkkkkkkae..akgekaeaeaksksskeesskagkkkekkklkkkks 238
                 e++++++ kkkkk+kka+  +k++k++++ +++s+++++++++++ ++++  ++++
  MMETSP0890-20130614|4700_1  98 ESSREQSDKKKKKRKKAKykKKHSKKKHTSQDASHSDTNDETTSSFKRRRFPSAQA 153
                 22222222222333322200222222222222222233333333333333333333 PP

>> PF13945.1  Splicing factor, salt tolerance regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   3.2e+03      40      50 ..      33      39 ..       7      63 .. 0.54
   2 ?   11.6   6.1   6.9e-05      0.19      23      65 ..     101     143 ..      90     171 .. 0.44

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.2
   PF13945.1 40 kskatseslna 50
                +s+a     ++
  MMETSP0890-20130614|4700_1 33 QSRAF----SV 39
                22211....11 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.9e-05
   PF13945.1  23 vaesdsssskkkkk..kkkkskatseslnasddstseslstesas 65 
                   +sd++++k+kk   kkk+sk++++s++as++ t+   +t+s+ 
  MMETSP0890-20130614|4700_1 101 REQSDKKKKKRKKAkyKKKHSKKKHTSQDASHSDTN--DETTSSF 143
                 222233333333221134444444445555544332..2222222 PP

>> PF06658.7  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  12.3   0.00039       1.1      75     120 ..      96     141 ..      93     160 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00039
   PF06658.7  75 kekkdeektaKkrekRekkkqkkkkkkkkkkeekkeekesekksee 120
                 +e+ ++e+++Kk++kR+k k kkk++kkk++++ ++++++++++++
  MMETSP0890-20130614|4700_1  96 REESSREQSDKKKKKRKKAKYKKKHSKKKHTSQDASHSDTNDETTS 141
                 7888999*****************9999999983333333333332 PP

>> PF14181.1  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   4.2e+03     136     136 ..      38      38 ..       9      58 .. 0.56
   2 ?   11.3   4.1   8.5e-05      0.23      86     144 ..      77     138 ..      73     152 .. 0.42

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.6
   PF14181.1 136 s 136
                 s
  MMETSP0890-20130614|4700_1  38 S 38 
                 1 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.5e-05
   PF14181.1  86 Paivkifrelsssde...eteeeeeesteeeekeeeeetktekkekkkkevkks.kkekekek 144
                 P + +++re           ee++ e++++++k++++++  +kk++kkk+++++ ++++++ +
  MMETSP0890-20130614|4700_1  77 PGLTRLLREAGDPGLiamTREESSREQSDKKKKKRKKAKY-KKKHSKKKHTSQDaSHSDTNDE 138
                 7777777776655544432333333333333333322222.2222222222222022222222 PP

>> PF08496.5  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.9    0.0022       6.1      64      94 ..      97     127 ..      80     144 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0022
   PF08496.5  64 dkeelkalekeekkeekekkkaekkkakkae 94 
                 +++++ + +k++kk++k+k k++++k+k+++
  MMETSP0890-20130614|4700_1  97 EESSREQSDKKKKKRKKAKYKKKHSKKKHTS 127
                 3444444445555544444444433333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1863  (0.136264); expected 273.4 (0.02)
Passed bias filter:                      777  (0.0568315); expected 273.4 (0.02)
Passed Vit filter:                       124  (0.00906963); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.51s 00:00:01.02 Elapsed: 00:00:00.78
# Mc/sec: 556.08
//
Query:       MMETSP0890-20130614|4692_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.78
# Mc/sec: 1106.01
//
Query:       MMETSP0890-20130614|4704_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-05   22.8   1.3     0.0002   21.5   0.3    1.9  2  PF09177.6  Syntaxin 6, N-terminal
      0.002   17.6   0.1     0.0056   16.2   0.0    1.8  2  PF05739.14 SNARE domain
     0.0039   17.4   1.2     0.0069   16.6   0.5    1.6  2  PF13334.1  Domain of unknown function (DUF4094)
  ------ inclusion threshold ------
      0.017   15.0   3.2       0.02   14.7   2.2    1.1  1  PF06818.10 Fez1
      0.074   12.4   3.9       0.48    9.8   0.1    2.5  2  PF04977.10 Septum formation initiator
       0.16   12.0   0.7        2.6    8.1   0.2    2.1  2  PF09969.4  Uncharacterized conserved protein (DUF2203)
       0.35   10.0   6.1       0.45    9.6   4.3    1.1  1  PF00529.15 HlyD family secretion protein


Domain annotation for each model (and alignments):
>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3     1e-07    0.0002      46      93 ..      18      65 ..       9      69 .. 0.91
   2 ?   -0.6   0.0      0.85   1.7e+03      66      84 ..      83     101 ..      70     116 .. 0.54

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1e-07
   PF09177.6 46 nalesiewdledLeeavsvveknpekfglseeeisrRkqfvaeireei 93
                ++l++ +  +++L+ a    e+np+++++s +e+ rR++ +++++e+ 
  MMETSP0890-20130614|4704_1 18 ASLQAQAHAVKELDAALISFEANPAQYNISIKELRRRRANLEALKEQC 65
                5677778889**********************************9986 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.85
   PF09177.6  66 eknpekfglseeeisrRkq 84 
                 +++++ f+ +++ i++ k+
  MMETSP0890-20130614|4704_1  83 SEQEKAFQEQDKAIASLKS 101
                 2333334444444443333 PP

>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   4.2e+03      22      31 ..      77      86 ..      75      88 .. 0.68
   2 !   16.2   0.0   2.8e-06    0.0056       1      50 [.      91     140 ..      91     148 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.1
                HHHHHHHHHH CS
  PF05739.14 22 dmgeeveeQg 31
                 mg+ ++eQ+
  MMETSP0890-20130614|4704_1 77 NMGQKISEQE 86
                5777777776 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14   1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrver 50 
                 e+d+++  l s+++ L+++  ++ ee + Q  l++++  +++ a+s ++r
  MMETSP0890-20130614|4704_1  91 EQDKAIASLKSGVSKLGSVGYQIREETHLQVGLIEELHCDIDGADSSLRR 140
                 8*******************************************999987 PP

>> PF13334.1  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   4.7e+03      72      86 ..      24      38 ..      16      44 .. 0.70
   2 !   16.6   0.5   3.6e-06    0.0069      31      86 ..      45     100 ..      34     105 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.4
   PF13334.1 72 heaiqsLdktIssLe 86
                 +a+++Ld  + s e
  MMETSP0890-20130614|4704_1 24 AHAVKELDAALISFE 38
                448888888776666 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.6e-06
   PF13334.1  31 evqlissqeaeeelqlvsedcdkkkkkesdqkdilgeVsktheaiqsLdktIssLe 86 
                 +++ ++ +++  +l+ ++e+c +++++    +++ +++s+  +a q++dk I+sL+
  MMETSP0890-20130614|4704_1  45 NISIKELRRRRANLEALKEQCSSQTPTAVATRNMGQKISEQEKAFQEQDKAIASLK 100
                 555556678899999***************************************97 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.2     1e-05      0.02      42     137 ..      15     110 ..       9     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1e-05
  PF06818.10  42 earaelqeseeklqelkdal...rtktleLevceneLqrkkseaellrekagrleaelaelrealasagtlkedclllsesdeakarrqageetlrelr 137
                   ra+lq++ ++++el +al   ++  ++ +++ +eL+r++ + e l+e+ +     ++  r+  ++    +e+  +++e+d a a  ++g  +l ++ 
  MMETSP0890-20130614|4704_1  15 VKRASLQAQAHAVKELDAALisfEANPAQYNISIKELRRRRANLEALKEQCSSQTPTAVATRNMGQKI---SEQEKAFQEQDKAIASLKSGVSKLGSVG 110
                 579*************998622256778899********************99887777777666654...7777788899988877777555554443 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.017        33      20      51 ..      35      66 ..      27      76 .. 0.78
   2 ?    9.8   0.1   0.00024      0.48      17      53 ..      73     108 ..      68     126 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.017
  PF04977.10 20 yqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                ++ +++ a+ +  +++l+ ++++Lea  ++ +
  MMETSP0890-20130614|4704_1 35 ISFEANPAQYNISIKELRRRRANLEALKEQCS 66
                56667777778889***********9888774 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00024
  PF04977.10  17 lalyqlkqeiaalqaelaklkaeneeLeaevkdLksd 53 
                 +a +++ q+i ++++  +++ + +++L++ v++L  +
  MMETSP0890-20130614|4704_1  73 VATRNMGQKISEQEKAFQEQDKAIASLKSGVSKL-GS 108
                 56778889*************************9.44 PP

>> PF09969.4  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.081   1.6e+02      65      86 ..      19      40 ..       6      46 .. 0.80
   2 ?    8.1   0.2    0.0013       2.6      12      76 ..      48     116 ..      40     125 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.081
   PF09969.4 65 eieelGvevkdldegLvDFpal 86
                +++++   vk+ld+ L+ F+a 
  MMETSP0890-20130614|4704_1 19 SLQAQAHAVKELDAALISFEAN 40
                57888889***********985 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0013
   PF09969.4  12 lpeieelleevkelkaeleeleealeeaekel...........eaeelkeeleeleeqiraaieeieelGvevkdl 76 
                 ++e+       ++ +a+le l+e+ ++++ ++           e+e+  +e +++ +++++ ++++ + G ++++ 
  MMETSP0890-20130614|4704_1  48 IKEL-------RRRRANLEALKEQCSSQTPTAvatrnmgqkisEQEKAFQEQDKAIASLKSGVSKLGSVGYQIREE 116
                 3444.......444444444444444444433444445555555566667779999999999999**999999975 PP

>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.3   0.00023      0.45      92     178 ..      16     102 ..      10     122 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00023
                 HHH..........HHHHHHHHHHHHTTEEE-S--.-----BSS-B------...---S-SEEE...EEESSEEEEEEE-HHHHHHHHHHHH-- CS
  PF00529.15  92 realaasqalaaskaeleaardnlasaeaalpaslgsikasqatlgalltn...lqaqglaak...aqldeaklqlaqtaaelarsirapaqg 178
                 ++a+++ q  a ++ el+aa + +++  a++++s+ ++++  a+l+al ++   + ++++a++   +++ e++ ++++  +     i++ ++g
  MMETSP0890-20130614|4704_1  16 KRASLQAQ--AHAVKELDAALISFEANPAQYNISIKELRRRRANLEALKEQcssQTPTAVATRnmgQKISEQEKAFQEQDKA----IASLKSG 102
                 45667777..8999**************************************985566666662335899999999888877....6666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       946  (0.0691925); expected 273.4 (0.02)
Passed bias filter:                      687  (0.0502487); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 684.12
//
Query:       MMETSP0890-20130614|4698_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-08   33.4   0.0    6.6e-08   32.6   0.0    1.4  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   4.8e-12   6.6e-08       1     141 [.      76     218 ..      76     239 .. 0.60

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.8e-12
   PF05050.7   1 DvGAniG.wssalyslaakcggggrviafEPnpn......nlaklaanltlalgdddglvelivaavgdgsallsavgdssgssss...........svledrntstievpvvtLDdfleen..isridllKiDvEGaElevLegaeetlkrcqpnii.vEv 141
                 D  An+   +s++ +l++  g+ g+  ++E+np+      +  + ++ + + +g+ ++++ ++  a gd            +               ++ +  ++++++  +v L +++e+   +++id++ +DvEGaE+ ++      ++++  +++ vE 
  MMETSP0890-20130614|4698_1  76 DLAANDAvAFSNTLMLERDLGWDGV--CIEANPQywlglsR--RKCTVIGAVVGQIKNEIVKFTFARGD----------HFK---DpgvlggivgpgFDNKVIGSGSRNFHTVPLQELFEQAnvPPHIDYMSLDVEGAEWYIM--EAFPWEKYSLRFLtVER 218
                 5678888645555555556777775..5*****96555321..22222012233333333334344433..........211...1223444455455556666779***********88778*******************9..55555555555566773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 1010.64
//
Query:       MMETSP0890-20130614|4701_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-32  109.3   0.2    1.5e-31  107.7   0.2    1.9  1  PF14370.1  C-terminal topoisomerase domain
    5.1e-27   94.3   0.3    5.1e-27   94.3   0.2    2.2  3  PF01028.15 Eukaryotic DNA topoisomerase I, catalytic core
  ------ inclusion threshold ------
      0.024   14.6   3.7      0.028   14.3   0.8    2.4  2  PF12918.2  TcdB toxin N-terminal helical domain
      0.035   13.5  16.5        1.2    8.5   4.7    2.3  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.16   11.8  15.5       0.56   10.1   1.1    2.2  2  PF09304.5  Cortexillin I, coiled coil
       0.58    9.9  11.6       0.74    9.6   8.0    1.1  1  PF06217.7  GAGA binding protein-like family
        1.3    8.4   4.7        2.2    7.7   3.2    1.3  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
        7.4    4.1  12.7          5    4.7   2.8    2.1  2  PF01496.14 V-type ATPase 116kDa subunit family
        8.2    6.5  14.1         16    5.6   6.2    2.4  2  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF14370.1  C-terminal topoisomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.2   9.7e-35   1.5e-31       2      71 .]     197     266 ..     196     266 .. 0.98

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 9.7e-35
   PF14370.1   2 eerieklelqlkdkeenktvaLgtSkinYiDPRitvawckkvevpiekifsktlrekFaWaikvdedfef 71 
                 +e+i+k e+ l++k+enk+v+LgtSk nY+DPRi+vawck+++vp+e+if ktl ekFaWa+ v  d++f
  MMETSP0890-20130614|4701_1 197 SEKIKKAEIGLRNKNENKEVSLGTSKANYCDPRISVAWCKRCDVPVERIFPKTLLEKFAWAMTVGPDWRF 266
                 69******************************************************************97 PP

>> PF01028.15  Eukaryotic DNA topoisomerase I, catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.2   3.4e-30   5.1e-27     125     229 ..       2     106 ..       1     112 [. 0.95
   2 ?   -2.8   2.9       1.6   2.4e+03       2      14 ..     168     180 ..     128     209 .. 0.53
   3 ?   -0.1   1.2      0.23   3.5e+02       2      38 ..     168     210 ..     165     221 .. 0.63

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 3.4e-30
                 ---BS-EE--HHHHHHHHHHH-.---HHHHHH----HHHHHHHHH----S...SHHHHHHHHHHHHHHHHHH----HHHH----S-HHHHH..HHH-..---G.. CS
  PF01028.15 125 pgeelFdklnssklneyLkelmeglsaKvFRTynasitlqeqLkrlkeevdesnvkekkkfynaanrevAillnhqrsvpkqhyismeklkkkieekkedikelk 229
                 +++++Fd+++  +ln++L+++m+gl+aKvFRTynas tlq++L ++   ++ +n  ++  +yn+anr vAil+nhqr+v+   ++  e l+++ e  k+++ el+
  MMETSP0890-20130614|4701_1   2 KESQVFDHVTPPELNAHLSSIMPGLTAKVFRTYNASETLQNELPDAALIKKMDNLGDQLVAYNEANRTVAILCNHQRTVSAALQSGLESLQENLELLKQQKRELQ 106
                 5789*******************************************99*******************************************9999988887765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.6
                 -----------HH CS
  PF01028.15   2 dskgkkqrdkeKy 14 
                 d+k kkq +++K+
  MMETSP0890-20130614|4701_1 168 DAKKKKQAQAHKF 180
                 3333444222222 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.23
                 -------...----HHHHHHHH---HHHHHHHHHHHH...--- CS
  PF01028.15   2 dskgkkq...rdkeKyekarklkkalpkiredyrkdl...ksk 38 
                 d+k kkq   +++ K     +++k ++++ e+++k     ++k
  MMETSP0890-20130614|4701_1 168 DAKKKKQaqaHKFSKTPSTADIQKRIDNWSEKIKKAEiglRNK 210
                 7888999444555555556778888888888888764454443 PP

>> PF12918.2  TcdB toxin N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.8   1.9e-05     0.028      20      49 ..      89     118 ..      83     123 .. 0.94
   2 ?   -1.6   0.0       1.7   2.6e+03      32      42 ..     189     199 ..     187     204 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.9e-05
                 S-HHHHHHHHHHHHHHHHHHHHHSTT---H CS
   PF12918.2  20 eqskkkyellkklkkeidnYnnlykkekns 49 
                 e++++ +ellk+ k+e++n+ n+ +++k++
  MMETSP0890-20130614|4701_1  89 ESLQENLELLKQQKRELQNWKNMAENSKAN 118
                 678999**********************99 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.7
                 HHHHHHHHHHH CS
   PF12918.2  32 lkkeidnYnnl 42 
                 + k idn+  +
  MMETSP0890-20130614|4701_1 189 IQKRIDNWSEK 199
                 77888888876 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.7    0.0012       1.8      18     103 ..      32     117 ..      27     156 .. 0.77
   2 ?    8.5   4.7   0.00078       1.2      71     140 ..     145     214 ..     129     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0012
   PF07106.8  18 svqdvvdnlqkklgKtavqkaLdeLvdegkikekeyGKq.kiYlanqdqlellsdeelnkldaeieelreevqelkqeiselekelk 103
                  + ++ + lq++l  +a  k +d+L d+ ++ + e   + +i + +q  + ++ ++ l+ l++++e l+++++el++ ++ +e+ + 
  MMETSP0890-20130614|4701_1  32 RTYNASETLQNELPDAALIKKMDNLGDQ-LVAYNEANRTvAILCNHQRTVSAALQSGLESLQENLELLKQQKRELQNWKNMAENSKA 117
                 56788999*****************987.6667777666589888999999999999999999999999999999998887776554 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00078
   PF07106.8  71 deelnkldae.ieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeank 140
                 +++  + +    e++++ +q  k+ +++ +++ +k ++ ++t+++++ i++  +++++ e  L++ + +nk
  MMETSP0890-20130614|4701_1 145 NATTIEQKVAaTEAYENAIQMRKDAKKKKQAQAHKFSKTPSTADIQKRIDNWSEKIKKAEIGLRNKN-ENK 214
                 444333343337788999999999999*******************************999998844.444 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1   0.00037      0.56      35      96 ..      49     117 ..      26     121 .. 0.68
   2 ?    6.9   4.5    0.0036       5.5      12      90 ..     140     222 ..     131     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00037
   PF09304.5  35 LakqkdeLksllasleaqkaer.......ekrlrelqakidellknlekeklakleLesrlskaekDka 96 
                 L+k+ d+L ++l + ++ +  +           + lq+ ++ l+ nle+ k+ k eL++ +  ae  ka
  MMETSP0890-20130614|4701_1  49 LIKKMDNLGDQLVAYNEANRTVailcnhqRTVSAALQSGLESLQENLELLKQQKRELQNWKNMAENSKA 117
                 46666665555554444444431111100344568************************9999998887 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0036
   PF09304.5  12 nelankLagLersledekvsqeeL.....akqkdeLksllasleaqkaerekrlrelqakidellknlekeklakleLesrlsk 90 
                 +e++n+ +++e+++  + +  + +     ak+k++ ++++ s     a+ +kr+ +   ki+ +  +l ++ + k e+    sk
  MMETSP0890-20130614|4701_1 140 KEMKNNATTIEQKVAATEAYENAIqmrkdAKKKKQAQAHKFSKTPSTADIQKRIDNWSEKIKKAEIGLRNKNENK-EVSLGTSK 222
                 699***************999988888889999999999999999999999999999999999999999888888.76666555 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.0   0.00049      0.74      26     211 ..      55     235 ..      32     241 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00049
   PF06217.7  26 nlglqlmssia.erdaki...rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenspvgvqvlsetksihslqm.lkh.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvingvslDestlPvPvC 211
                 nlg ql++  + +r  +i   ++r +     +aa+++  ++++++ + l++ +k  ++  ++++++ ++++ p      s+   + + q+ +++ ++++++a+   e++   ++  e+a +  k++kkkk+ q +k  k++ +   +k+ ++  +k kk+++  r k+e k++ l+  + ++ + ++ v  C
  MMETSP0890-20130614|4701_1  55 NLGDQLVAYNEaNRTVAIlcnHQRTV-----SAALQSGLESLQENLELLKQ-QKRELQNWKNMAENSKANKIP----LHSGDDPMAQAQTaVDQaKEMKNNATT-IEQKVAATEAYENAIQMRKDAKKKKQAQAHKFSKTPSTADIQKRIDNWSEKIKKAEIGLRNKNENKEVSLGTSKANYCDPRISVAWC 235
                 45555554443233333322222222.....22222222333333344444.333333333333333333333....333333333344434443555555555.5555556666677777788888888888888888888888888888888888899989************99999988888877777 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.2    0.0014       2.2      33     105 ..     133     205 ..     131     209 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0014
                 -HHHHHHHH---EEEE--SSTTHHHHHHH----BSSS.-TTTCTTSB-B-----HHHHHHHHHHHHHHTT-SE CS
  PF01262.16  33 lgAievakglgaevvaldkrperleqveslgaefvevdrseeeerkeydkeeseefiesntellaekiapadl 105
                 + A++ ak++  + + +++  ++ e+ e+  + + + + +++ ++ ++ k+ s + i++   + +eki++a +
  MMETSP0890-20130614|4701_1 133 QTAVDQAKEMKNNATTIEQKVAATEAYENAIQMRKDAKKKKQAQAHKFSKTPSTADIQKRIDNWSEKIKKAEI 205
                 689****************************9999999888888888**********************9976 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   2.8    0.0033         5      76     119 ..      81     126 ..      51     156 .. 0.71
   2 ?    3.6   1.0    0.0067        10       8      64 ..     161     217 ..     156     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X CS
  PF01496.14  76 leeleeelkeveeslesLekelneleelrnvlreekefleenk..v 119
                    l++ l++++e+le L+++ +el++++n+ ++ k      +  +
  MMETSP0890-20130614|4701_1  81 SAALQSGLESLQENLELLKQQKRELQNWKNMAENSKANKIPLHsgD 126
                 457899999**********************999887766544442 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0067
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14   8 glvqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvp 64 
                 +++q+r   ++ +++q +++ + ++ ++ ++++   +++ikka+i l++++e+++v+
  MMETSP0890-20130614|4701_1 161 NAIQMRKDAKKKKQAQAHKFSKTPSTADIQKRIDNWSEKIKKAEIGLRNKNENKEVS 217
                 6788888888888899999999999999********************999998876 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.043        65      13      38 ..      85     110 ..      47     124 .. 0.79
   2 ?    5.6   6.2      0.01        16       6      85 ..     136     213 ..     131     224 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.043
  PF00804.20  13 rgeiekisekveelkrlhsrilaspd 38 
                 ++ +e+++e++e lk++ +++ + ++
  MMETSP0890-20130614|4701_1  85 QSGLESLQENLELLKQQKRELQNWKN 110
                 56778888888888888777666555 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.01
  PF00804.20   6 feqveeIrgeiekisekveelkrlhsrilaspdpdkqtkeeleeltaeikklankirskLksleqsieqeegqnrssadl 85 
                 ++q++e +++  +i++kv   +   ++i + +d++  +k++ +   +  +    +i++++++ ++ i++ e   r++++ 
  MMETSP0890-20130614|4701_1 136 VDQAKEMKNNATTIEQKVAATEAYENAIQMRKDAK--KKKQAQAHKFSKTPSTADIQKRIDNWSEKIKKAEIGLRNKNEN 213
                 69*******************************75..6666666666656666778888887777777666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1977  (0.144602); expected 273.4 (0.02)
Passed bias filter:                      574  (0.0419836); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.72
# Mc/sec: 955.21
//
Query:       MMETSP0890-20130614|4711_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-53  180.9   0.0    2.6e-51  174.6   0.0    3.0  1  PF10255.4  RNA polymerase I-associated factor PAF67
  ------ inclusion threshold ------
      0.026   14.2   1.7      0.095   12.5   0.0    2.4  2  PF07719.12 Tetratricopeptide repeat
      0.042   13.3   0.2       0.58    9.7   0.0    2.4  2  PF00515.23 Tetratricopeptide repeat
      0.099   13.2   1.0       0.27   11.8   0.1    2.2  2  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF10255.4  RNA polymerase I-associated factor PAF67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   7.7e-55   2.6e-51      34     404 .]       1     448 [.       1     448 [. 0.84

  Alignments for each domain:
  == domain 1    score: 174.6 bits;  conditional E-value: 7.7e-55
   PF10255.4  34 wdiiDEFvYQfqsfcryrarlkkkte............eelqel.kkndqdvwsvesvlnvLeslvdkseikelleaekkgeeesevadelessslrkqlgYfsligllrvhvLlGdYyaalkvlenid..lskkalyskvaaayvsllyyvGfaylmlrrYkdAirvlsqillylaktk........qllssksyqqdaiaKkiekmyallaiclvls....pqk......ldesisqqlkekys......dkfeklqrg............dleafeelFskacPKfispvspldvkkeeenknk.......................eplqrqlklFlkevkqqqklsklrsylkLYttikleklasllevdde...........................elrsqllavksksrqlkkwksgasllsgelvss..sdldfyidgdiihikekkvqkkygdiflrqinklk 404
                 +di+ EFvYQfqsfc+ r       +            e+++ +  + +q+ w+ ++v+ +L+++++ +  k+                    s+l k +gYf+l + +r+++LlGdY aa+ +l  +   l++   +++v  +  ++ly++Gfa lml rY+dAi+vl  ++  la+          ++l   s   ++++K  ++   lla+++ ls      k      +d+   +++kek++      d      +              l +   l++ +cPK+i p+  +  + ++  k++                       +++++q +lF++ v+++ +l k+rsyl+LYt+i +ekla + + +++                            +++    + +   +l+ + + +s ++g++  +   dl fy+dgd+ih++e k   +y d+f+rqink++
  MMETSP0890-20130614|4711_1   1 FDILHEFVYQFQSFCQTRGGRHTGIKtspflddedsphENIEAFpPDDQQSSWQASIVIGYLHEFAKYATAKK------------------APSQLHKEFGYFALAARCRLETLLGDYGAAVDCLACLTdpLDETCPLAQVWSCRLNVLYHLGFALLMLERYTDAIKVLDALIAPLARLHkayggftqRALPPASPPPEQVQKSFDRSLGLLALAHHLSsggkA-KrhtdlgIDDASKHAIKEKFAdklaliD------QIqivstsseagtkSLTILASLLTASCPKIIVPAAHSLPTLSSPLKADnpeihaaadlpsapvstskhgqlDAYNQQIRLFTSHVQHYLRLAKIRSYLQLYTSIGIEKLARFNDASPQtfhaqliglkhtmllkclppgtsipttGISTTSP-ATQDEIDLVSTPHAESTSQGSIYATslLDLHFYVDGDMIHVNEPKGIVRYDDFFIRQINKFR 448
                 7***************99876665544677888888878888888555689***************9999877..................578999****************************99853358888*****************************************998788777765677788899*********************66541.2577899************994555553......333334446666669999*************98754333333333333445666779**********************************************************8888888899999999999999999988744444444.4445556668888889999999888668899*****************************85 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.27   9.2e+02       3      24 ..      86     107 ..      84     108 .. 0.79
   2 ?   12.5   0.0   2.8e-05     0.095       3      28 ..     130     155 ..     129     156 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleaf 24 
                 al ++ ++   lgdy  A++++
  MMETSP0890-20130614|4711_1  86 ALAARCRLETLLGDYGAAVDCL 107
                 566677777789******9996 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                 +ly lG a++ l +y +A++ ++  +
  MMETSP0890-20130614|4711_1 130 VLYHLGFALLMLERYTDAIKVLDALI 155
                 79******************998766 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   4.6e+02      13      23 ..      96     106 ..      86     108 .. 0.84
   2 ?    9.7   0.0   0.00017      0.58       3      22 ..     130     149 ..     129     152 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.13
                 HTT-HHHHHHH CS
  PF00515.23  13 klgkydeAley 23 
                  lg+y  A+++
  MMETSP0890-20130614|4711_1  96 LLGDYGAAVDC 106
                 79********9 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHTT-HHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAle 22 
                 +ly lG a+l l++y +A++
  MMETSP0890-20130614|4711_1 130 VLYHLGFALLMLERYTDAIK 149
                 79*****************8 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.9e-05      0.27      32      58 ..     129     155 ..      88     162 .. 0.81
   2 ?   -3.4   0.0         4   1.4e+04      18      39 ..     306     327 ..     305     329 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.9e-05
   PF13432.1  32 eallllaeallrlgrldeAaallraal 58 
                 ++l+ l+ all+l r+ +A+++l+a++
  MMETSP0890-20130614|4711_1 129 NVLYHLGFALLMLERYTDAIKVLDALI 155
                 789*********************987 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4
   PF13432.1  18 aaleaalalaPeaaeallllae 39 
                 +a+++ ++l+  +++ +l+la 
  MMETSP0890-20130614|4711_1 306 DAYNQQIRLFTSHVQHYLRLAK 327
                 6777777887668888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.88
# Mc/sec: 1288.04
//
Query:       MMETSP0890-20130614|4713_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-64  217.7   0.0    2.1e-64  217.0   0.0    1.3  1  PF00069.20 Protein kinase domain
    3.4e-28   98.3   0.0    4.8e-28   97.8   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
      0.007   15.9   0.2      0.018   14.6   0.1    1.6  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.0   0.0   4.6e-68   2.1e-64       1     260 []      74     393 ..      74     393 .. 0.97

  Alignments for each domain:
  == domain 1    score: 217.0 bits;  conditional E-value: 4.6e-68
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE.....STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT..CEE-S--SGGGEEEETT--EEE------EEE...........CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH...........................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee.....kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsn..giiHrDLKpeNiLldkkgelkiaDFGlakkl...........eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks...........................................eelkdlikkllekdpakRltaeeilkhpwl 260
                 y++l+ +G+G++G+V+ a+++++ + vA+K++ ++ e  + +k+++rE+++l+ l+H+ni++l  +         ++ly+vl+++e+ dl++++k+ ++ls+++++++++q+l+gl++lH    +++HrDLKp N+L++++ +lki+DFGla++              + + +t++v+tr+Y+APE++ +  eytk+vD+W++G+il+ell +k++++g+++++ql li++  +k+++  ++  ++ +                                           + ++dl+++ll +dp+ R  +e +l h ++
  MMETSP0890-20130614|4713_1  74 YNVLDVVGQGAYGVVCAAHDEEKDESVAIKKIFNPFEYVTCAKRTLREIRLLRLLRHDNIIRLRTLLPPartdtFKDLYIVLDLMET-DLASVIKSPQTLSDDHVQFFLYQVLRGLKFLHTAnpAVTHRDLKPRNLLVNSNCDLKICDFGLARVDfelrgegqragGGTAKVMTDYVATRWYRAPEIIAGYVEYTKAVDMWAVGCILAELLGRKPLWPGSDSKQQLGLICQCIGKPTQTTIERIQQPEirsfvsalpeenthsfhamqisnrvpnlngnsirfhelypkanPLACDLLSRLLVFDPEVRFDVEMALDHAYM 393
                 678999***********************************************************9987888899**********99.********************************97679***************************9769********9999999*******************************************************************999988877799****************************************999*************************986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0     1e-31   4.8e-28       5     205 ..      78     287 ..      74     326 .. 0.82

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 1e-31
                 EEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE..SSSS.....EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEETTTEEEE-----CEES.......TTTSCE.....EESTT-EECGGGS.-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GT CS
  PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvct..keep.....llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk..lvHrdLaarNvLleeekvvkisDfGLardi.......ekddyy.....kkkeeaklpvkWm.apEslkekk.ftsksDvWsfGvllwEiftlgesp 205
                 + +G+Ga+G V+ ++ +    +k+ +Va+K++ +  +  +  ++ l+e+++++ l+h+ni++l  +    +  +     l+iv+++++  dL +++++   ++l+ +++  f +q+ +G+++L++ +  + HrdL  rN L++++   ki+DfGLar         +           k  ++ +  +W+ apE++   + +t++ D+W+ G++l E++   ++p
  MMETSP0890-20130614|4713_1  78 DVVGQGAYGVVCAAHDE----EKDESVAIKKIfNPFEYVTCAKRTLREIRLLRLLRHDNIIRLRTLLPpaR--TdtfkdLYIVLDLMET-DLASVIKSP--QTLSDDHVQFFLYQVLRGLKFLHTANpaVTHRDLKPRNLLVNSNCDLKICDFGLARVDfelrgegQ----RagggtAKVMTDYVATRWYrAPEIIAGYVeYTKAVDMWAVGCILAELLG--RKP 287
                 679********999887....8999*****9966666677799*********************9998542..334667********86.9******98..9999999999*************9987799**************************8766543221....22344244445558899999*****97765****************975..444 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1     4e-06     0.018     164     198 ..     194     227 ..     170     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4e-06
                 S--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE CS
  PF01636.18 164 eppvllHgDlhpgNllvdpddgrvgviDfedaglg 198
                   p+++H+Dl+p+Nllv+++ +   + Df++a++ 
  MMETSP0890-20130614|4713_1 194 ANPAVTHRDLKPRNLLVNSNCDL-KICDFGLARVD 227
                 5789**************44333.59999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.93
# Mc/sec: 1162.10
//
Query:       MMETSP0890-20130614|4714_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-20   71.1   0.8    1.3e-19   70.6   0.5    1.3  1  PF13383.1 Methyltransferase domain
    0.00095   19.0   0.3     0.0022   17.9   0.2    1.7  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF13383.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.5   1.9e-23   1.3e-19      33     229 ..      93     298 ..      67     300 .] 0.76

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 1.9e-23
   PF13383.1  33 snpknPn..rekakawyldnlePevtCsqeeRvgp.aGdGpkwvCdPnrlrkkeedclvySvGSngdfefEegliklvgsaceiHvFD..fgaaarkeskepkrihyhqlglgsaeekavepdl....lksladivkaLghkgrtidvlkiDcegcEwstykdWldadv......rqilveihaapsreav.akdffdaleeeefllfhkepn 229
                  ++++ +  r++  +  +d++ePe +C +e Rv +  GdGpkwvC    +++   +c   S+GSn d +fEeg+ +  g  c+  + D  +++ +r ++ + k  +y+    +s    +v ++l    l  l+ +++  g  +   + +k D+eg E+  +kd  ++        +++ +eih+  + +++   + f+  +  +++lfhke n
  MMETSP0890-20130614|4714_1  93 LDEQQSHgkRQSLMHVVMDLFEPEYSCCNEIRVPNhFGDGPKWVCGVDTVQA---PCETLSLGSNYDAQFEEGIFQMAG--CKSYIIDptLQDLNRLNNFNAKISKYNAKINTSVGIGQVGTKLkgrpLIPLSKVIEDYGVFH--FNFVKADIEGAEFGMMKDVRELCQsgkvkiDHLNLEIHQGDDMHPAkFVELFETAYYCQLMLFHKERN 298
                 222222244999*********************8847********9998888...***********************9..*******7666777777778888888765555555555555555555789999999888654..7899*************98654323334559********99999982345555556667789****98 PP

>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   3.2e-07    0.0022      80     147 ..     202     273 ..     113     289 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.2e-07
   PF05050.7  80 svledrntstievpvvtLDdfleen.isridllKiDvEGaElevLegaeetl.krcqpni..i.vEvhefkdf 147
                     + +t+ +  p + L  ++e++ + +++++K D+EGaE+  +  + + l +  +++i  + +E+h+  d 
  MMETSP0890-20130614|4714_1 202 VGIGQVGTKLKGRPLIPLSKVIEDYgVFHFNFVKADIEGAEFGMM-KDVRELcQSGKVKIdhLnLEIHQGDDM 273
                 3333344446667888999898888888999**************.566666588888888899999886432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.67
# Mc/sec: 1073.00
//
Query:       MMETSP0890-20130614|4719_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-27   94.7   0.1    1.1e-26   93.6   0.0    1.6  2  PF12717.2 non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.71   9.8e+03      12      38 ..     199     225 ..     193     226 .. 0.68
   2 !   93.6   0.0   8.1e-31   1.1e-26       4     176 ..     230     397 ..     227     399 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.71
   PF12717.2  12 lgDLcvrypnlvdpyleklyacLkded 38 
                 l  +++  +  +++ l++l+  L +++
  MMETSP0890-20130614|4719_1 199 LVKMACVAQPCCERQLPRLVTLLANHN 225
                 334666666679999999999988876 PP

  == domain 2    score: 93.6 bits;  conditional E-value: 8.1e-31
   PF12717.2   4 iranaiialgDLcvrypnlvdpyleklyacLkde.dalvRktallvlshLiledmvKvkgqlflemlkllaDedeeiralAelffsellkkk..npnllynllpelisvLnnctehelveeldeerrkkiyrfllefikkdkqkeslveklcsrllaanv.eadakvlsdilvilsl 176
                  r  + + lgDL+ r+pn+v+p+ + +++ L de +  +R + l v+s+L+ +d++K+kg ++ e+++ l+D+d  +++ A+++f  l+ k   + +++ynllp+++s+L+          ++++ +k ++++ll+f+++ k+  ++ +k++ rl   +  +++ ++++++ ++ls+
  MMETSP0890-20130614|4719_1 230 ARVSIAVGLGDLATRQPNTVEPWSDAIFSVLGDEdCVAIRANLLAVISRLVVNDILKLKGTGLAEVATRLVDPDLGVANSAKSLFISLNAKAhrQASPIYNLLPDVLSRLA---------PKHPDLFKPVVTYLLKFVDQPKHIIAIADKILRRLIVIKSqNDALVTIRNLTFALSK 397
                 6888999**************************95599****************************************************987788899***********9.........356789****************************97666423444566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.71
# Mc/sec: 1852.96
//
Query:       MMETSP0890-20130614|4723_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 609.60
//
Query:       MMETSP0890-20130614|4724_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-10   39.6   0.3    4.4e-10   38.9   0.2    1.4  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.087   10.9   0.0      0.092   10.8   0.0    1.0  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.2   6.5e-14   4.4e-10       2      39 .]      10      47 ..       9      47 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 6.5e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                + +++++g t+ + cv fspdg+++a+++rDg  r+W+
  MMETSP0890-20130614|4724_1 10 TELRVFSGATDEIICVVFSPDGHCFATSGRDGVNRVWH 47
                6799*********************************6 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.4e-05     0.092      84     121 ..      18      54 ..      12      56 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.4e-05
   PF09726.4  84 vtsdlvCLlfiPvqWLffaastyvWvqyvWhtdkGiCl 121
                  t +++C++f P     fa s    v+ vWh   G Cl
  MMETSP0890-20130614|4724_1  18 ATDEIICVVFSPDGH-CFATSGRDGVNRVWHGSSGSCL 54 
                 5899********876.5799*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 194.49
//
Query:       MMETSP0890-20130614|4725_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:01.80
# Mc/sec: 75.88
//
Query:       MMETSP0890-20130614|4730_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-11   43.4   0.0    2.6e-11   42.9   0.0    1.2  1  PF00648.16 Calpain family cysteine protease


Domain annotation for each model (and alignments):
>> PF00648.16  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.9e-15   2.6e-11     201     296 ..      17     122 ..       3     124 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.9e-15
                 GGTT-BTTTS-BSS---EE---EEEEB......---EEEEEEEE----...--------STTSGGGGGS-HHHHHHHTTS...S-.---EEEEHHHHHHH-CEEEEE- CS
  PF00648.16 201 vdeeaktakglvkghaysvtgvkevel......kgekvklirlrnPWG...eveWkGaWsdesseWsevdeeekaelqlk...veedGefWmsfedflrefsrleicn 296
                   ++a+ + +l ++hay+++++ e+         g++++l+rl nP G   +++W+G+Ws++ss W+   e ++a+l ++    ++   f++s  d+ r+f  l ic+
  MMETSP0890-20130614|4730_1  17 STKNAQLTSDLAPSHAYAIVSILELFEpppplgTGTRHRLLRLANPHGpesKYSWQGQWSEHSSCWT--PEMRQAALDNSggtSSSIATFFISLIDLRRHFATLSICE 122
                 4566788899*********999988666677779**************98789*************9..56666666655111556689******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.79
# Mc/sec: 1183.01
//
Query:       MMETSP0890-20130614|4739_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.77
# Mc/sec: 737.58
//
Query:       MMETSP0890-20130614|4751_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1019  (0.0745319); expected 273.4 (0.02)
Passed bias filter:                      646  (0.0472499); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 466.66
//
Query:       MMETSP0890-20130614|4752_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.8   0.1      0.062   12.8   0.1    1.4  1  PF12828.2 PX-associated


Domain annotation for each model (and alignments):
>> PF12828.2  PX-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.6e-06     0.062       5      40 ..      97     132 ..      93     134 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.6e-06
   PF12828.2   5 tskeLtptqeHyLkkeLlelqlarElealskpdalr 40 
                  +k L+ + + +Lk + ++ q+++El++l++++++r
  MMETSP0890-20130614|4752_1  97 VVKPLSQVDQEFLKSKIVQGQTQAELQKLKQAERVR 132
                 5688999***********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1643  (0.120173); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.82
# Mc/sec: 444.20
//
Query:       MMETSP0890-20130614|4745_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-09   35.9   0.1       0.24   11.4   0.0    3.8  4  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    1.5e-07   31.1   0.1        0.3   10.9   0.0    3.5  3  PF13180.1  PDZ domain
  ------ inclusion threshold ------
       0.54    9.9  10.0      0.011   15.5   2.5    1.5  2  PF03153.8  Transcription factor IIA, alpha/beta subunit
        4.2    5.8  11.6       0.63    8.5   5.3    1.5  2  PF09731.4  Mitochondrial inner membrane protein
        5.4    5.8  10.2        8.2    5.2   7.1    1.1  1  PF00242.12 DNA polymerase (viral) N-terminal domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00035      0.96      12      62 ..     123     169 ..     115     194 .. 0.73
   2 ?   -4.0   0.0         5   1.4e+04      26      41 ..     207     222 ..     196     227 .. 0.74
   3 !   10.5   0.0   0.00017      0.45       5      58 ..     279     330 ..     276     354 .. 0.74
   4 !   11.4   0.0   8.9e-05      0.24      43      79 ..     519     560 ..     484     562 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00035
                 ---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHH CS
  PF00595.19  12 lGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvsh 62 
                 lGf ++ ++     ++ v +v    a +ag lk++D+++++N   +++v++
  MMETSP0890-20130614|4745_1 123 LGFAISLDKGG---NLSVVRVTGPEAIKAG-LKANDILVAINAHLFADVWD 169
                 67777765554...6666666655677777.***********866666644 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5
                 SEEEEESTTTHHTTTT CS
  PF00595.19  26 gifvsevvpggaaeag 41 
                 ++  ++++p+++a + 
  MMETSP0890-20130614|4745_1 207 PVMSTNTLPNPPATVR 222
                 5666888999888765 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00017
                 ETTTTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGT CS
  PF00595.19   5 ekekrgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdve 58 
                 + +krg lGfs+  ++      + v e+   +   a+ +k GD ++++Ng+ ++
  MMETSP0890-20130614|4745_1 279 KFDKRGTLGFSINLENGRL-VVVSVRETKMSPCWLAA-IKSGDHLVKLNGRAFN 330
                 45589********999953.45555555555666666.************8876 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 8.9e-05
                 BSTTCEEEEETTEBGTTSHHH.....HHHHHHHTHHSEEEEE CS
  PF00595.19  43 lkeGDkIlsvNgvdvenvshd.....eavqaikgkkgevtLt 79 
                 ++++D+++++Ng++v +v ++     ++ q+ik +++++tLt
  MMETSP0890-20130614|4745_1 519 VEIHDQLVAINGTSVDDVKDEsefnaRVLQQIKAAGRPLTLT 560
                 4699***********999876222225666666666677776 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00011       0.3       2      50 ..     122     168 ..     121     191 .. 0.78
   2 !   10.1   0.0   0.00019      0.52       2      46 ..     285     329 ..     284     345 .. 0.85
   3 !    6.1   0.0    0.0034       9.3      32      69 ..     519     561 ..     486     570 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
   PF13180.1   2 diGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvkslt 50 
                  +G  +s +++ + ++vv V+ +  a kaglk++Di+++++ +   ++ 
  MMETSP0890-20130614|4745_1 122 QLGFAISLDKG-GNLSVVRVT-GPEAIKAGLKANDILVAINAHLFADVW 168
                 57777777776.667777765.55689**************98776664 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00019
   PF13180.1   2 diGvsvsqlentrgvlvvsVkes..sPaakaglkpGDiilkvdgkkv 46 
                  +G s+  +++  +++vvsV e   sP   a +k+GD ++k++g++ 
  MMETSP0890-20130614|4745_1 285 TLGFSINLENG--RLVVVSVRETkmSPCWLAAIKSGDHLVKLNGRAF 329
                 68899999998..9999998654338999***************986 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0034
   PF13180.1  32 lkpGDiilkvdgkkv...ksltdlkslll..kkkpGdtvkltv 69 
                 + + D++++++g+ v   k+ ++++ ++l   k +G  ++lt+
  MMETSP0890-20130614|4745_1 519 VEIHDQLVAINGTSVddvKDESEFNARVLqqIKAAGRPLTLTF 561
                 5788***********5445556777665545566777777776 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.3       3.8     1e+04      69     102 ..     219     252 ..     196     272 .. 0.44
   2 ?   15.5   2.5     4e-06     0.011     103     213 ..     360     472 ..     339     630 .. 0.69

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 3.8
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF03153.8  69 qaslavtaaaasqentpsssssaassaaaslpag 102
                  ++  v+++++s +  p++  ++   +a+  p+g
  MMETSP0890-20130614|4745_1 219 ATVRSVSSGSKSGNAVPKKADTKIRRTASPPPPG 252
                 3333334444444444444433333333333333 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXXXXXXXXXXXXXX....XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX.... CS
   PF03153.8 103 vpaestiktepgqllkvevpvmvtqnsanselqqpaqqr.aaqqlqqslgapassqas....slqqqpaplksneesqeqqqpgkeiqqqqtdgasddekasvarrreaaasqeae 213
                 v+++ t k+ p+ + + + p++++  +++++  qp+qq+  +q  + ++  p+++ +     + qq+pap ++ne+s  +   ++ +q++   +++ + +as a +++a ++++ e
  MMETSP0890-20130614|4745_1 360 VARPTTAKNTPSSTRQAT-PSVKQRSQPQPQ-PQPQQQKkDNQPPHPRVIPPKAATRAasspTRQQAPAPASQNESSAAEASWKNFVQESAARETAAA-SASSATSTTATEPESRE 472
                 555666666666644444.555444433333.455555432223333333333333223333666667777665555555555555555444443333.55555555555553333 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.3   0.00023      0.63      61     156 ..     364     470 ..     337     555 .. 0.48
   2 ?   -2.2   0.1       0.4   1.1e+03     431     453 ..     588     610 ..     575     636 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00023
   PF09731.4  61 pqisvvssvtkeskepkeekkkekipkkssaseevaeveakatseaaeak...........qpksiqeleealeelleealketekataqakeakeeakeavdeatd 156
                 ++ + + s+t++ +++ +++++++++ +++++++ ++ +++ + + ++a+              ++q  ++a+e++ ++ ++e +  + +a++a+ ++ +  +e ++
  MMETSP0890-20130614|4745_1 364 TTAKNTPSSTRQATPSVKQRSQPQPQPQPQQQKKDNQPPHPRVIPPKAATraassptrqqaPAPASQNESSAAEASWKNFVQESAARETAAASASSATSTTATEPES 470
                 44444444444444444444444444444444444444444444444444211111111111333344444444444444444433333333333222222222222 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.4
   PF09731.4 431 rplkkelkaLkelakdDelvsaa 453
                 + + +++k +k l k+Del++++
  MMETSP0890-20130614|4745_1 588 EGIITQVKLIKALRKNDELAKLL 610
                 66889999***********9976 PP

>> PF00242.12  DNA polymerase (viral) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.1     0.003       8.2     218     330 ..     355     471 ..     343     480 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.003
  PF00242.12 218 rrtrnlaenvsrksd..kersvglvvqskiqrsRlglqakqgklakeqqgrs..lalrarkessarrsvgvedsssrvksnrasksssslsqsavretaysslstserasssesave 330
                 +r+r++a +++ k+   + r++ ++v+++ q +   + ++q k +++++ r    +  +r+ ss +r++  ++ s +++s    + ++ +++sa reta  s s+   ++++e + +
  MMETSP0890-20130614|4745_1 355 FRRRQVARPTTAKNTpsSTRQATPSVKQRSQPQPQPQPQQQKKDNQPPHPRVipPKAATRAASSPTRQQAPAPASQNESSAAEASWKNFVQESAARETAAASASSATSTTATEPESR 471
                 5788888877766541133344444444444333333333444444444444115677888899999988888877777777777778888999******99999998887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       841  (0.0615126); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:01.22
# Mc/sec: 1294.43
//
Query:       MMETSP0890-20130614|4748_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:01.12
# Mc/sec: 742.23
//
Query:       MMETSP0890-20130614|4765_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 232.03
//
Query:       MMETSP0890-20130614|4771_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-16   59.0   1.5    1.1e-10   40.8   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.062   12.8   0.0    1.9  2  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.7e-14   1.1e-10       2      39 .]       3      40 ..       2      40 .. 0.95
   2 !   17.7   0.4     3e-07    0.0021       8      23 ..      52      67 ..      44      68 .] 0.80

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.7e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++ +l+gHts V  +afsp+g+++++++ Dg+ r+++
  MMETSP0890-20130614|4771_1  3 TLLLVLEGHTSDVHGCAFSPNGKRIVTAGQDGKARVFS 40
                7789********************************86 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3e-07
                ESSSSSEEEEEEESSS CS
  PF00400.27  8 rgHtspVtcvafspdg 23
                 +Ht++++c++fs+dg
  MMETSP0890-20130614|4771_1 52 GEHTHSISCCCFSHDG 67
                79************96 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.1e-06     0.062      12      24 ..      16      28 ..      11      28 .. 0.87
   2 ?   -2.0   0.0      0.39   2.7e+03      16      20 ..      63      67 ..      61      68 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.1e-06
                EEEEE-----EEE CS
   PF07676.7 12 gePawSPDGkkiv 24
                ++ a+SP+Gk+iv
  MMETSP0890-20130614|4771_1 16 HGCAFSPNGKRIV 28
                5789********8 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.39
                E---- CS
   PF07676.7 16 wSPDG 20
                +S DG
  MMETSP0890-20130614|4771_1 63 FSHDG 67
                899*9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.59
# Mc/sec: 276.19
//
Query:       MMETSP0890-20130614|4779_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.50
# Mc/sec: 340.28
//
Query:       MMETSP0890-20130614|4781_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.96    9.4   4.7        1.5    8.8   3.3    1.3  1  PF06547.7 Protein of unknown function (DUF1117)
          2    7.6   7.9        2.7    7.2   5.5    1.1  1  PF10148.4 Schwannomin-interacting protein 1


Domain annotation for each model (and alignments):
>> PF06547.7  Protein of unknown function (DUF1117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.3   0.00022       1.5      69     114 ..     114     156 ..      92     160 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
   PF06547.7  69 rRifRnllsllgrvrssrssssssssesgsrkresssrvsvfsrss 114
                   i+Rn+   +g +++  s sss ss+s+s++ +ss+++s+ s+ss
  MMETSP0890-20130614|4781_1 114 TNIIRNF---FGDTNDKLSYSSSDSSSSSSSDLDSSDSSSDSSSSS 156
                 4577765...556677777776666666677777777777777665 PP

>> PF10148.4  Schwannomin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.5   0.00039       2.7      31      97 ..      97     163 ..      87     172 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00039
   PF10148.4  31 scsksgknslssrlqsgvnlqicfvndsssdkdsdaedsktetsldtplspmskqssslsdrdttee 97 
                  c ++   +l sr+  g n+   f  d++      + ds + +s d   s  s +sss s  d+ +e
  MMETSP0890-20130614|4781_1  97 QCKHTVSYTLKSRVAHGTNIIRNFFGDTNDKLSYSSSDSSSSSSSDLDSSDSSSDSSSSSSLDSDDE 163
                 577788899*****************99877777889999999999999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.84
# Mc/sec: 530.62
//
Query:       MMETSP0890-20130614|4780_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.73
# Mc/sec: 147.72
//
Query:       MMETSP0890-20130614|4783_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-15   57.4   0.0    1.6e-15   56.8   0.0    1.3  1  PF03948.9  Ribosomal protein L9, C-terminal domain
    1.6e-12   46.3   0.0    4.5e-12   44.9   0.0    1.8  2  PF01281.14 Ribosomal protein L9, N-terminal domain


Domain annotation for each model (and alignments):
>> PF03948.9  Ribosomal protein L9, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   2.3e-19   1.6e-15       2      84 ..     105     190 ..     104     193 .] 0.92

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 2.3e-19
                 TSTTTTHHHHTSS-.EEECS----.-S----BSHHHHHHHHTTT------SSTTS-SS..-B-B---EEEEBSSSSTEEEEEEEEE CS
   PF03948.9   2 eeaeelaekLeglt.vtikakageegkLFGsVtakdiaealkkqlgieidkkkielpe..pikelGeyevevkLhkeVtakikveV 84 
                 eea ++ +kL ++  +++++k+g++gkLFGsVt +di   ++++  +++d  ki lp    i +lG y  +++L+k++++++ ++ 
  MMETSP0890-20130614|4783_1 105 EEAAAIGSKLLSIGkFKLQRKSGDDGKLFGSVTPADIIGVVNAAASCNLDAPKIILPPakDIDHLGDYPFSIQLYKDISVDLVLTL 190
                 789999999999999*****************************************77546*******************998775 PP

>> PF01281.14  Ribosomal protein L9, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   6.6e-16   4.5e-12       2      47 ..      44      89 ..      43      90 .. 0.95
   2 ?   -3.6   0.0       0.9   6.1e+03       7      13 ..     164     170 ..     163     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 6.6e-16
                EEEESS-BTTB-----EEE-----IIIIITT---EEE-SHHHHHHH CS
  PF01281.14  2 kVILledveglGkkGdiveVkpGYarNfLlpkglAvyateenlkel 47
                 V+L++d +  G++Gd+ +V++G+  N+L+p++lA +a+ee ++e 
  MMETSP0890-20130614|4783_1 44 SVVLTKDAPPWGNEGDVLRVSRGFTLNYLMPNQLAQPASEEIIAEA 89
                69**************************************999876 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.9
                 S-BTTB- CS
  PF01281.14   7 edveglG 13 
                 +d+++lG
  MMETSP0890-20130614|4783_1 164 KDIDHLG 170
                 8999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.83
# Mc/sec: 557.23
//
Query:       MMETSP0890-20130614|4778_1  [L=989]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-32  112.8   0.0    7.4e-32  110.1   0.0    2.4  1  PF00009.22 Elongation factor Tu GTP binding domain
    2.1e-16   59.6   0.0      5e-16   58.4   0.0    1.6  1  PF11987.3  Translation-initiation factor 2
    9.6e-08   31.9   6.7    0.00084   19.3   0.1    3.1  3  PF03144.20 Elongation factor Tu domain 2
    8.3e-05   22.4   0.0    0.00022   21.1   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
     0.0028   17.1   0.0     0.0062   15.9   0.0    1.6  1  PF03029.12 Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.028   14.7   0.1       0.18   12.1   0.1    2.5  1  PF08477.8  Miro-like protein
      0.057   12.6   0.0       0.19   10.9   0.0    1.8  2  PF00071.17 Ras family
       0.12   10.8   0.0       0.27    9.6   0.0    1.8  1  PF04791.11 LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   4.3e-35   7.4e-32       5     186 ..     369     601 ..     366     603 .. 0.77

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 4.3e-35
                 EEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE.......................................T.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST...............CHHHHHHHHHHHHHH.............HHHCTTGCT.........CGEEEEEE-STCCHHHHHHHHHHHHHS CS
  PF00009.22   5 nigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle.......................................ketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv...............eaeleeiveelkekl.............lekylekge.........eevpvvpgSalkgegidaLleaivell 186
                  ++i+ghvD GKt l+d++ +++                  +++ ++ giT++++a++++                                       ++ +   + +iDtPGH+ Fs+  +rg +++D+a++vvd  +G epqT e + ++k+ +++++v++NKiDr+                +++e++ +e ++++             +       +         + v++vp+Sa++geg+ +Ll ++++l 
  MMETSP0890-20130614|4778_1 369 ICCIMGHVDTGKTKLLDKIRQTN------------------VQDGEAGGITQQIGATYFDkatlvekikpvrefleshekkpsaidsilfsqdsnlsdaDSLRLPALMIIDTPGHEAFSNLRSRGSSLCDMAIVVVDLMHGLEPQTLESISMLKRKRTPFVVALNKIDRCydwkpiegasirsslATQAEHTRQEFQQRFeqcsvelneqglnV-------SlywentdpkTYVSIVPTSAITGEGVPDLLRTVLSLT 601
                 689*****************555..................445555555555555555555555555555555555555555555666555576654338888999***********************************************************************999776666666666666666677777766666663.......033333446689*******************998765 PP

>> PF11987.3  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0     3e-19     5e-16      12     106 ..     732     838 ..     719     841 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 3e-19
   PF11987.3  12 egevkelnvivkaDvqGsleAlkesLekls.....teevkvkvihagvGaitesDvtlAsasn.......aiilgFnvradakakklaeeegvkirlysvIYklidd 106
                 + ++++ +v v+a + G+leAl e L++       +e   ++v++a+vG+i ++Dv+ As++        a+ilgF+v +d++a++ aee gv+i++ ++IY+l + 
  MMETSP0890-20130614|4778_1 732 SLATEDHGVSVQASTLGALEALLEFLRNPGkdrdgKERAPIPVFSASVGPIYKKDVIRASVMGkkgheeyACILGFDVPVDRDARAHAEEVGVQIFTADIIYHLENH 838
                 44567899******************97652222367899*********************87789*************************************9765 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         3   5.1e+03      22      42 ..     373     394 ..     372     419 .. 0.51
   2 !   19.3   0.1   4.9e-07   0.00084       1      70 [.     629     703 ..     629     706 .. 0.91
   3 !   15.0   0.3     1e-05     0.017       3      58 ..     879     931 ..     878     935 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3
                 ET.TTCTEEEEEEEEEEEEETT CS
  PF03144.20  22 lg.ndtskkeivtrvrsletfn 42 
                 +g  dt+k++ + ++r++ +  
  MMETSP0890-20130614|4778_1 373 MGhVDTGKTKLLDKIRQTNVQD 394
                 5556666666444444443333 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 4.9e-07
                 EEEEEEEEEE--EETTEEEEEET.TTCTEEE.EEEEEEEEEETTCEESEE..........ECEE--EEEESSSGGGGGTT-- CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskke.ivtrvrsletfngdldea..........vaganaGvivaikgledaiikG 70 
                 G + ++++++Gtl +Gdt++++        +  vt  r+l+t+ ++ +e           + +a++G+++ + +l++ +  G
  MMETSP0890-20130614|4778_1 629 GATLDVILVNGTLFEGDTLVVCTqE-----GaLVTQARALLTP-PPSRETrvktelikheRIEAAVGLKITGPNLDK-VVPG 703
                 67889****************8844.....35***********.9899999*************************9.7887 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1e-05
                 EEEEEEEE--EETTEEEEEET.TTCTEEE..EEEEEEEEEETTCEESEEECEE--EEEE CS
  PF03144.20   3 vatgrvysGtlkkGdtvrilg.ndtskke..ivtrvrsletfngdldeavaganaGviv 58 
                 v++++v +G+lk+G  + i + n     +   v+ v+s+e  ++++d++ +g+++ +++
  MMETSP0890-20130614|4778_1 879 VVGVTVDDGILKVGTPLCI-PhN-----GflDVGVVQSIECNHKEVDRVKKGQECAIKI 931
                 899****************.545.....4679*********************999887 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.3e-07   0.00022       2     114 .]     370     516 ..     369     516 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.3e-07
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE.....................................ETTE........EEEEE---SSSHHHHHHHHHHHHHH.HHHHCTSSEEEEEEETTSHHHH.HHHHHHHHHH.TCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev.....................................kkek........iilvDtPGiiegasedkeiegikky.lekveradvlllvvdasavlke.adkellnele.akkplilvlnk 114
                 ++i+G+  +GK+ L+ ++ +  +++ ++  g T++i   ++                                                 + ++DtPG        +    +++   +    +d++++vvd+ + l+  + + + ++l+ ++ p++++lnk
  MMETSP0890-20130614|4778_1 370 CCIMGHVDTGKTKLLDKIRQT-NVQDGEAGGITQQIGATYFdkatlvekikpvrefleshekkpsaidsilfsqdsnlS--DadslrlpaLMIIDTPGH-------E---AFSNLrSRGSSLCDMAIVVVDLMHGLEPqTLESI-SMLKrKRTPFVVALNK 516
                 79****************976.55999999******4433233344444455555566555555555555665544431..14455666557******2.......2...3333303444888********8884433144444.7775578999999998 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.6e-06    0.0062      92     236 ..     456     601 ..     429     603 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.6e-06
  PF03029.12  92 dyvlfDtPGQielftlseslakiveaLesefalvvvylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllkek...lekeleffedvealqallekd..............lkklaesiaelleefalvlrflplsaekeesmeellslideal 236
                 +++++DtPG   + +l++ ++        +   +++++vD     +p ++ s      s++ + ++P+vvalnk+D + +    +   +     ++a ++    +               + l+ s+    ++++  ++++p sa ++e++ +ll+++ +++
  MMETSP0890-20130614|4778_1 456 ALMIIDTPGHEAFSNLRSRGS--------SLCDMAIVVVDLMHGLEPQTLESI-----SMLKRKRTPFVVALNKIDRCYDWkpiEGASIRSSLATQAEHTR---QefqqrfeqcsvelnEQGLNVSLYWENTDPKTYVSIVPTSAITGEGVPDLLRTVLSLT 601
                 799*******99999999999........555578888888888888776666.....89999*************9875455522333333322222222...1333557777766433334444444444556666888888889998888888876665 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.18       3     119 .]     371     518 ..     370     518 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
   PF08477.8   3 vvvGdkgvGKssllsqlvgeefp..........................kkklpeeikg.dtlavktlevdvdtel..........lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                  ++G  ++GK+ ll ++ + + +                          ++   +e+++ +  a++++    d++l          l + d+ g+e ++      +  +d +++v+dl  +   ++++++ + l++ r      p ++  nk+D
  MMETSP0890-20130614|4778_1 371 CIMGHVDTGKTKLLDKIRQTNVQdgeaggitqqigatyfdkatlvekikPVREFLESHEkKPSAIDSILFSQDSNLsdadslrlpaLMIIDTPGHEAFSNLRSRGSSLCDMAIVVVDLMHGLEPQTLESI-SMLKRKR-----TPFVVALNKID 518
                 699*************9999999999999999999999999999986663333333333133455566666666667788888***99************77777*************998777776555.5566666.....79999999998 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8   3.1e+03       4      18 ..     372     386 ..     370     410 .. 0.78
   2 ?   10.9   0.0   0.00011      0.19      49     147 ..     456     559 ..     433     567 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.8
                 EE-------HHHHHH CS
  PF00071.17   4 lvGdsavGKtslllr 18 
                 ++G   +GKt ll +
  MMETSP0890-20130614|4778_1 372 IMGHVDTGKTKLLDK 386
                 789999999999865 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00011
                 EEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGG.........G-SS-HHHHHHHHHHTTEEE---BTTTTT CS
  PF00071.17  49 kleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee.........kravsteegeelakelglkfletSAktne 147
                  l i DT G e f++lrs   + ++++++v d+ +        + +e i++ +++ +p+v+  nK+D             r   ++++e++ +e++ +f ++S + ne
  MMETSP0890-20130614|4778_1 456 ALMIIDTPGHEAFSNLRSRGSSLCDMAIVVVDLMHGLE----PQTLESISMLKRKRTPFVVALNKIDRCYdwkpiegasIRSSLATQAEHTRQEFQQRFEQCSVELNE 559
                 589***************************99976432....366777888888888999999999988878888877755555667778888888888888877665 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00016      0.27     196     302 ..      70     176 ..      51     643 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
  PF04791.11 196 ekaekledekeeaessvddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlks.letlknkkaqrkvav 302
                 +k  k + ++++ e++v++ +   ++ s + +   e + k++ ee+ l+++ ++++ + ++ee++l+++++e +  k +ekl +  e+++++  + ++++k+qr+  +
  MMETSP0890-20130614|4778_1  70 KKKHKKKGHNKGGENEVEEEIPVSSKQSAKGKLIAERLAKQKAEEERLRQQREEEERRIREEEERLEKEAKEAE-EKRQEKLRRRAEKKAEAkRAGTYETKKQREQRL 176
                 44455555556666667777766666677777778888888889999999999999999999999999998888.566666666666655541456888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1800  (0.131656); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.29u 0.39s 00:00:02.68 Elapsed: 00:00:02.27
# Mc/sec: 1044.05
//
Query:       MMETSP0890-20130614|4785_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.9   0.0    0.00032   21.1   0.0    1.4  1  PF12681.2  Glyoxalase-like domain
    0.00024   20.9   0.0     0.0016   18.3   0.0    1.9  2  PF13669.1  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.047   13.5   0.0    1.5  1  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     7e-08   0.00032      11     108 .]       2     127 ..       1     127 [. 0.63

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7e-08
   PF12681.2  11 aFYeklLGfevaeeegdf....vtlsl.glalg.sgvrellgld......epeapggggvhlafev.......edldalvarlkaa..........Gakvlgepedepwgg...refyvrDPdGnlielv 108
                 +FY+ lLG++++ ++ ++    ++l+  g++l+  +v e++++d        ++++ g  h+a++v       ++l ++++    +           + ++++p+++  g+     +++rDPdG l+el+
  MMETSP0890-20130614|4785_1   2 KFYS-LLGLREEVRFRTGsaraAWLQGaGMRLElIEVPEYMNPDnaapdvFRNSTTLGLNHVAIDVsntssdmDSLSDFLRM---LndyseqtfqrSLGLVHKPYQQMIGQdvfELCFIRDPDGVLLELI 127
                 6999.7****9995543322447777767777666677777776444333333445577999****6666333333344444...3444766666545557888887777644468999*********96 PP

>> PF13669.1  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.4e-07    0.0016      16      88 ..       3      77 ..       1      85 [. 0.71
   2 ?    0.5   0.0      0.12   5.3e+02      15      54 ..      89     127 ..      84     134 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.4e-07
                HHHH.---EESS--E.EETTTTEEEEEEE---.-EEEEEE......E----.-THHH.---B---EEEEES-HHHHHHHHH CS
   PF13669.1 16 efskllGvgpweryrdepqnvdlafarlgdgsavqielie......plege.sflae.hgeglhHlafevddldaavarle 88
                ++s llG++  e++r+++ ++++a+++  +   +++elie      p++   + +++ +  gl+H+a+ v+++  ++++l 
  MMETSP0890-20130614|4785_1  3 FYS-LLGLR--EEVRFRTGSARAAWLQGAG---MRLELIEvpeymnPDNAApDVFRNsTTLGLNHVAIDVSNTSSDMDSLS 77
                555.67765..5556666777889988875...6788887544444665444555556999**********9999999875 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
                 HHHHH.---E.ESS--E.EETTTTEEEEEEE---.-EEEEE CS
   PF13669.1  15 aefskllGvg.pweryrdepqnvdlafarlgdgsavqieli 54 
                 + f+++lG+  + ++    +  ++l+f r +dg  v +eli
  MMETSP0890-20130614|4785_1  89 QTFQRSLGLVhKPYQQMIGQDVFELCFIRDPDG--VLLELI 127
                 567888887533444444455678999999998..899998 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.047      18     128 .]       3     126 ..       1     126 [. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1e-05
                 HHHHHH--EEEEEEEESCSCCEEEEEEEETSSCEEEEEEEE...CCTTSCTCHHHEE.C...........SEEEEEEEECEHHHHHHHHHHHHH-SGEEEEEECHHHHCEEEEE......EEE-TT--EEEE CS
  PF00903.20  18 FYtkvLGfklvkktdnteeteglriaffhaggghielvlne...apsgaakhvkkie.e...........tvhhvafialdvedvgkaldrlkeagvkvvaepgrhyfgalysf......yfrDpdGillei 128
                 FY   LG++   ++     t+++r+a+++  g ++el+  +   +p++aa+ v   + +            v  +    ++  d+ + l+  +e+ ++ + ++ + ++ +++++      ++rDpdG+lle+
  MMETSP0890-20130614|4785_1   3 FYSL-LGLREEVRFR----TGSARAAWLQGAGMRLELIEVPeymNPDNAAPDV---FrNsttlglnhvaiDVSNTSSDMDSLSDFLRMLNDYSEQTFQRSLGLVHKPYQQMIGQdvfelcFIRDPDGVLLEL 126
                 6665.8888888888....7788888888888777666544111455555555...3234455455566677777778888899999999999999*****************9****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.95
# Mc/sec: 355.67
//
Query:       MMETSP0890-20130614|4782_1  [L=1369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-39  133.8   2.1    1.4e-24   86.6   0.4    3.3  2  PF02854.14 MIF4G domain
     0.0012   18.4   0.0     0.0033   16.9   0.0    1.7  1  PF02847.12 MA3 domain
  ------ inclusion threshold ------
       0.05   13.9   0.8       0.32   11.3   0.4    2.6  2  PF10305.4  RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> PF02854.14  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   5.6e-15   2.5e-11       4      65 ..     684     744 ..     682     747 .. 0.96
   2 !   86.6   0.4     3e-28   1.4e-24      68     209 .]     927    1115 ..     920    1115 .. 0.94

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 5.6e-15
                 HHHHHHHHHSTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH CS
  PF02854.14   4 vkgilnklskdnfevlidellklaqdldknelkevinlifekaveepsfiplyarliaklns 65 
                 v+ ilnk++++nf++l  +l +l   +  ++l++v + +f+kav+ep+f+ +ya+l+akl++
  MMETSP0890-20130614|4782_1 684 VTAILNKMTPENFDKLSTQLMSLDFIS-FDMLQRVSSVVFDKAVDEPHFAVVYAELCAKLAK 744
                 789***********************9.78*****************************986 PP

  == domain 2    score: 86.6 bits;  conditional E-value: 3e-28
                  THCHHHHHHHHHHHHHHCH.............................................HCCCHHHHHHHHHHHHHHHHHHHHCCCTSB-H-HHHHHHHHHHHCCCCHCC..........HCHHHHHHHHHHHHHHH---HCCHHCSSTCHHHHHHHHHHHHHCT...SSSSHHHHHHHHHHHHHHHCC CS
  PF02854.14   68 pqnFrilllnklqeefekry..........................................leneleeeedgnrrrrlglvrFlgelfklkmltskilldvlkelleqvtketa..........ppqnleeieilltlLttiGktlenneklkkeldeiferiqkiledatrqelssrvrfmlkdlielkknk 209 
                  + nFr++llnk+q efek                                            +     e   + +rr+lg+vrF+gelfk+++l++ki++++++ l+    + ++            +++e++e++++l+ t+Gk l+  +k+k+ ld +f  ++ + +d   + l +r+rfml+dl e+++n+
  MMETSP0890-20130614|4782_1  927 KFNFRRSLLNKCQNEFEKIAkgsggatalaemateamkeveinmkkakdealaaglpappepEPLTHKEWVVKLKRRMLGIVRFIGELFKQELLKEKIMHECVNLLIGPYINSEEaktgkptpdnIMPDDESVEAAAKLFLTVGKILD--TKSKQHLDAYFGHFRVLEKD---KRLTARTRFMLQDLREVRENN 1115
                  348***************879**************************************9876666666677889********************************999988889*****9999999********************..********************...9*****************996 PP

>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.2e-07    0.0033       2     108 ..    1198    1304 ..    1197    1308 .. 0.96

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.2e-07
  PF02847.12    2 krkiflileeylssgdyeeavskleeLklpkqhheivkillecaleekktyneyyalLlsklceknlisskqfekgfsrvlesledleldipeairnlaeflarlia 108 
                  +  i +++eey s  d +e   ++ e+ +++    +++i +e +++ k++ ++ ++  +  l + ++  s+++  g++  l++l+d ++d+p+a +++a+ +  l++
  MMETSP0890-20130614|4782_1 1198 QNRIRSTIEEYGSLHDEKELLISFDEMPISQAAVFFIDISIEQIIDGKSQIQQSALTCIRLLLSNQRLPSSDVLRGLEPKLRDLPDRSMDSPKAFEMVAKAVSLLLV 1304
                  67899***********************************************************************************************9988776 PP

>> PF10305.4  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         3   1.4e+04      17      61 ..      80     124 ..      78     127 .. 0.77
   2 ?   11.3   0.4   7.1e-05      0.32      10      83 ..     498     572 ..     493     574 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3
   PF10305.4  17 rikkakekqkkeikevrkllwGkeelkedidekekilevpkrpal 61 
                 +i+++ + + ++ ++  ++  G++ ++++ +++  +l+ ++ p+ 
  MMETSP0890-20130614|4782_1  80 QIDQHGNRRTTQPRRSNQRGGGQQASPQQQQQQIPVLPHQQLPPT 124
                 667777777777777777888888899999999999998888775 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.1e-05
   PF10305.4  10 fstSWirrikkakekqkkeikevrkllwGkee.lkedidekekilevpkrpallslliedldltidkpsfpleel 83 
                 +++ W +++ + k+++  + k+   ++  k++ ++++ +++++i++ ++  +l ++ ++  +l id psf +e+ 
  MMETSP0890-20130614|4782_1 498 VADDWEQNVTASKDTAAAAPKKTLASVVKKSNiSHQEQSNNKTIYSKKQMLELRDAFFNPHELPIDLPSFTIEKQ 572
                 6889****************************88888999999****************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2004  (0.146577); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                       147  (0.0107519); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.16u 0.36s 00:00:03.52 Elapsed: 00:00:02.21
# Mc/sec: 1484.44
//
Query:       MMETSP0890-20130614|4784_1  [L=927]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-60  203.5   0.0    5.1e-60  202.6   0.0    1.4  1  PF00069.20 Protein kinase domain
      4e-29  101.3   0.0    1.1e-27   96.7   0.0    2.2  1  PF07714.12 Protein tyrosine kinase
    5.3e-05   23.2   4.1    0.00026   21.0   2.9    2.3  1  PF00433.19 Protein kinase C terminal domain
     0.0023   16.9   0.3     0.0052   15.7   0.0    1.7  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
      0.007   16.1  12.4      0.007   16.1   8.6    2.2  2  PF01363.16 FYVE zinc finger
  ------ inclusion threshold ------
       0.42   10.3  10.2          2    8.1   7.1    2.2  1  PF10238.4  E2F-associated phosphoprotein
        3.1    7.2   8.9         40    3.7   2.3    3.6  3  PF13240.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.0   2.6e-63   5.1e-60       1     254 [.     504     775 ..     504     785 .. 0.94

  Alignments for each domain:
  == domain 1    score: 202.6 bits;  conditional E-value: 2.6e-63
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.........................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.........................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                 +el+  lG+G+fG+V++++k+++gk +A+K++kk e +++ + +++r E  i++kl+Hp++vkl  +f+++ +ly+v+++++ggd+f++l++ ++l+e  +++++ +i+ +l++lH+ ++++rDLKpeN+L+d +g+  +aDFGl++ +                                ++++gt+ YmAPE+ll ++++t++vD+W+lG++ +e+l  + pf+g+   ++ e++++  k++ e d++ s    + +++l+  ll+k+p++Rl  ++ 
  MMETSP0890-20130614|4784_1 504 FELVAVLGRGGFGTVMQVRKRSNGKVYAMKVFKKAELRRRRQVERTRtERGIIQKLDHPYVVKLRYAFQTEAKLYMVMDFAQGGDFFSFLRRFKRLKEPWARHYLAEIALALHHLHEVNVVYRDLKPENVLMDGDGHALLADFGLSRDFgarsplprdtvalletsasqsratlGGMLAASRSYCGTEIYMAPEMLL-QRGHTRSVDWWGLGLLAHEMLASRHPFHGA---SHAETLRNMVKREPELDRRLS----PLACSLLLGLLAKKPHDRLGTHRG 775
                 578999*****************************9888888777778*********************************************************************************************************************99998877766677889***************.******************************...999999999999999998877....89*****************96554 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   5.5e-31   1.1e-27       3     225 ..     506     747 ..     504     770 .. 0.80

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 5.5e-31
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES...............TTTSCE........EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS- CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi...............ekddyy........kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrle 225
                 l   lG+G fG+V++ + +    ++    a+K++k+    ++++ e+  +e  i++kl+hp +vkl  ++ +e +l++v+++++gGd+ +fLr+   ++l+  +  ++ ++ia ++++L++ ++v rdL   NvL++ + +  ++DfGL+rd                ++ ++          ++++      +mapE+l ++  t   D W  G l +E++  +++p++g s++e+l+++ k++ +l+
  MMETSP0890-20130614|4784_1 506 LVAVLGRGGFGTVMQVRKR----SNGKVYAMKVFKKaeLRRRRQVERTRTERGIIQKLDHPYVVKLRYAFQTEAKLYMVMDFAQGGDFFSFLRRF--KRLKEPWARHYLAEIALALHHLHEVNVVYRDLKPENVLMDGDGHALLADFGLSRDFgarsplprdtvalleTSASQSratlggmlAASRSYCGTEIYMAPEMLLQRGHTRSVDWWGLGLLAHEMLA-SRHPFHGASHAETLRNMvKREPELD 747
                 6678***********9999....344444666664421455666889999********************************************8..9******************************************************9999999888888766233333112233222222222344589***************************9.779****977666655537766655 PP

>> PF00433.19  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.9   1.4e-07   0.00026       4      48 ..     810     901 ..     808     902 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.4e-07
                 STTXXTCCTCCCCTS-SS---.................................................--HHHHTT--GGGGTT--EEXX CS
  PF00433.19   4 sptDTsNFDpeFteesvtdtpi...............................................gadsspltsskqenFrGFtYvrf 48 
                 ++ D+s FD+eFt+e++ d+                                                 g++s ++++  + +F +FtY  +
  MMETSP0890-20130614|4784_1 810 NDVDVSQFDDEFTNETPRDSDFdreqalknknggniqdnhqggkffvdlftlrfpntkpaspsdnygrqGNPSPDESNLYEDEFTNFTYIEP 901
                 788*****************77**********************************************88888888888899*******765 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.9   3.7e+03     167     190 ..      20      41 ..      17      54 .. 0.65
   2 !   15.7   0.0   2.7e-06    0.0052     104     165 ..     588     646 ..     533     659 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.9
   PF06293.9 167 karrrlrakkwkekdLarLkrsfl 190
                 k++ +   +++ +++L++L  ++ 
  MMETSP0890-20130614|4784_1  20 KSNIQK--QEDAKHNLQQLRNQVC 41 
                 555554..7888999999987655 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.7e-06
   PF06293.9 104 dLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDl 165
                 d  ++l++++ l+e   r  l +++ + + +h+++v ++dl + n+l+d ++   ++ l D+
  MMETSP0890-20130614|4784_1 588 DFFSFLRRFKRLKEPWARHYLAEIALALHHLHEVNVVYRDLKPENVLMDGDG---HALLADF 646
                 667788999999999***********************************99...8888888 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   8.6   3.6e-06     0.007       8      65 ..     175     226 ..     170     229 .. 0.86
   2 ?   -1.6   0.6       1.2   2.3e+03      11      36 ..     322     331 ..     312     381 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
  PF01363.16   8 eakkCeiCakkFsltrrrhhCrlCGkvvCskCsskrvekleeeaaeekevrvCkeCle 65 
                  a  C+iCa + s     +hC +C ++ C++C   r+ ++    +++ + r+C+eC+ 
  MMETSP0890-20130614|4784_1 175 MAVFCQICACALS--DTVKHCPACARLACQSCLGRRAYSI----QNKISARICRECYV 226
                 5678*****9985..5678******************666....8999********96 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.2
  PF01363.16  11 kCeiCakkFsltrrrhhCrlCGkvvC 36 
                 k                C  CG  v 
  MMETSP0890-20130614|4784_1 322 K----------------CTRCGARVA 331
                 4................555554443 PP

>> PF10238.4  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.1     0.001         2      18     120 ..     179     331 ..     147     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.001
   PF10238.4  18 yklskkkksdavLsCpaCfttlclecqrhesyk..nqYralfvvnvkveedkvlyekekkakkrkrnkkknekkkenakeeae................................................sdedeselyraVkCseCnteva 120
                  ++++++ sd+v  CpaC  + c  c  +  y+  n+  a +   + v++  v + + ++++k   n  + + ++e+ ++  +                                                  ++++   +  kC+ C+  va
  MMETSP0890-20130614|4784_1 179 CQICACALSDTVKHCPACARLACQSCLGRRAYSiqNKISARICRECYVDHPDVYHPDVANKNKGYWNMADIKLRQEERQQGLSaaeaqellenresaaptvidddendsrdmvqeeafeeeipleakngrtIYKKQNTEIKWSKCTRCGARVA 331
                 45568899******************7777665116678999************655555555544444444444444433336788899999999999999999999999999999999999999888874555566667788999998888 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.3      0.02        40       1      19 [.     178     196 ..     178     198 .. 0.94
   2 ?    3.0   0.0     0.033        65       1       7 [.     322     328 ..     308     331 .. 0.82
   3 ?    1.1   0.0      0.14   2.6e+02      17      23 .]     686     692 ..     686     692 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.02
   PF13240.1   1 kCPkCGaeledgakFCpyC 19 
                 +C  C   l+d++k Cp C
  MMETSP0890-20130614|4784_1 178 FCQICACALSDTVKHCPAC 196
                 79999999*********** PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.033
   PF13240.1   1 kCPkCGa 7  
                 kC+ CGa
  MMETSP0890-20130614|4784_1 322 KCTRCGA 328
                 5777776 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.14
   PF13240.1  17 pyCGtpl 23 
                 +yCGt++
  MMETSP0890-20130614|4784_1 686 SYCGTEI 692
                 7999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       719  (0.0525892); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.42u 0.43s 00:00:01.85 Elapsed: 00:00:00.97
# Mc/sec: 2290.13
//
Query:       MMETSP0890-20130614|4792_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-56  189.3   0.4    4.3e-56  188.9   0.2    1.2  1  PF05351.6 GMP-PDE, delta subunit


Domain annotation for each model (and alignments):
>> PF05351.6  GMP-PDE, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.9   0.2   3.2e-60   4.3e-56       4     156 ..      22     178 ..      19     179 .. 0.95

  Alignments for each domain:
  == domain 1    score: 188.9 bits;  conditional E-value: 3.2e-60
   PF05351.6   4 aniyeidftrfkirdletgkvlfeiakpess....aedkkeedpnagrvvryqftpkllklkavgaeveFtvgdkpvknfrlierhyfrdqllksfdFefGFciPsskNtwehiyefpalseelveemiegpyetrsdsfyfvdnkLvmhnkadyaY 156
                 an y+i+f++f i+d  t++++fe++++       + + ++ dp++ r ++y++  ++l+l  v+ ++ F+vg++p++nfr+ierhyfrd+l+ksfdF fGFciP s+Ntw++ y+ p+++  l+++mi++pyet sdsfyfv+++L+mhnka y+Y
  MMETSP0890-20130614|4792_1  22 ANEYGIEFQSFVIQDYTTKQTIFEVSRDRPLamdtNRKIDHNDPDSMRKIHYELSEDFLRLPIVSTTLVFSVGHRPLSNFRMIERHYFRDELVKSFDFSFGFCIPGSTNTWDACYDLPPMDSALIDDMINHPYETSSDSFYFVGDQLIMHNKAYYKY 178
                 799***********************9976644445666788999***************************************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.45s 00:00:01.00 Elapsed: 00:00:00.87
# Mc/sec: 738.19
//
Query:       MMETSP0890-20130614|4791_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-72  243.3   0.0    3.7e-72  242.7   0.0    1.2  1  PF00152.15 tRNA synthetases class II (D, K and N)
    1.1e-07   31.4   0.1    2.2e-07   30.4   0.1    1.5  1  PF01336.20 OB-fold nucleic acid binding domain
    2.8e-07   30.0   8.4    2.8e-07   30.0   5.8    2.0  2  PF00458.15 WHEP-TRS domain
  ------ inclusion threshold ------
      0.015   14.4   0.1        3.1    6.7   0.0    2.4  2  PF01409.15 tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.7   0.0   1.1e-75   3.7e-72       3     333 ..     244     583 ..     242     585 .. 0.86

  Alignments for each domain:
  == domain 1    score: 242.7 bits;  conditional E-value: 1.1e-75
                 HHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SCEE-----.--EEEEE-----ECCEEEEE-S-SHHHHHHHCH.---SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHHH.HHHHHHHHHHHHHHHHHHH........S.HHHH.....T-SSSSS--EEEHHHHHHHHHHTS---------EE---TS----TH--HHHHHHHHHHHHH--SSEEEEE--BCCCSTTTBBBCCCC.........TTBBS-EEEEE---EEEE--EB---HHHHHHHHHH----...CCCHHHHCHHHHHCCT-----EE-EEE-EHHHHHHHTT-SSGGGGSSS--B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx........xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15   3 elrlkyryldlrreklqknlklrskiikairefldergFleveTPiLtkstpegaardflvpskkgkfyakeayLpqSpqlykqllmv.aGfdrvfqiarcFRdEdlradrhppEFtqldlEmsfvdeed.vmklveelikevvkkvlek........eeelkl.....gvelkkpfpritykeaiekygsdkpdlrfelelkdltelkklefkvgalreelaeeklidekkskplfvvdfPleehpftkpkeede.........kalaeafDlvlngvElggGseRihdpeeqekrfeeqgld...eeeaeekfgfllealkyGapphgGialGlDRlvmlltglesIreviaFpkt 333
                 ++rl++r++dlr++  q+++++++k + ++ +fld++gF+ ++TP L   + eg++  f ++     ++ ++a L+qSpqlykq+l + a fd+v++i+++FR+Ed++++rh+ EFt +dlEms+ ++   v++l  +l+++++ ++ ++        +   ++      + lk+   ri+++e i+ +++ ++  + +        +++l+++ ++++ +++++    +   ++++  ++Pl+ +pf+++ ++           + l+++fD++++g E+++G++Rihd++++ +r++    +      + e  + +l+a+kyGa phgG ++Gl+R+vml+t +++Ir++  Fp++
  MMETSP0890-20130614|4791_1 244 DTRLNHRVIDLRTPASQAIMRIKAKTALLFANFLDNEGFVGIQTPKLLGGASEGGSSVFNLE-----YFGRPACLAQSPQLYKQMLAAcADFDKVYEIGPVFRAEDSNTRRHLCEFTGMDLEMSIKEHYFeVLDLFGRLFNHIFATLQQQcatelqtiS---QVypfepFLFLKDGPLRISFAEGIQLLREYGITEEQQG------AFDDLSTENEKILGDIVKQ----KFCTDFFIMDKYPLSIRPFYTMPDPITyydpkcppeQHLSNSFDMFMRGQEIVSGAQRIHDYKLLLERVHFCHTSashGGPKPESIQSYLDAFKYGAFPHGGGGIGLERVVMLFTATTNIRKTSFFPRD 583
                 79************************************************************.....999***************986366**********************************998766**************99777876653331...22222233444455889999999999999884444433......3344455556778888888....5567999999**********9888766689999999*******************************999887777784445588******************************************97 PP

>> PF01336.20  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   6.5e-11   2.2e-07       1      73 [.     130     210 ..     130     213 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 6.5e-11
                 EEBEEEEEEEE-EECSEEEEEEEE-SSSEEEEEEET.....CCHHHHHCTS-TT-EEEEEEEEEEE......TTSEEEEEEEEE CS
  PF01336.20   1 VtvaGrVtsisdrsggkvafitlrDgtgriqvvlfr.....eeatklaenlkeGdvvrvtGrvkrr......pggelelkveki 73 
                 V+v+Gr ++i  r++g+++f++lr  t +iq+v+       ++  ++ ++l  +++v +   +++       +  ++elk+ ki
  MMETSP0890-20130614|4791_1 130 VWVRGRTHAI--RGKGNLSFLVLRQATSTIQCVASAsdevpKGLVSYVSKLNLETIVDIQAIIEKAqvascsQS-DVELKILKI 210
                 8*********..****************************************************9966666444.599998877 PP

>> PF00458.15  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   5.8   8.1e-11   2.8e-07       5      40 ..       1      36 [.       1      60 [. 0.92
   2 ?   -6.1   2.3         4   1.4e+04      16      29 ..      80      93 ..      77      94 .. 0.42

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 8.1e-11
                HHH---HHHHHH-----HHHHHHHHHHHHHHHHHHH CS
  PF00458.15  5 iaaQGdlVRkLKaekapkedvdaaVakLLaLKkeyk 40
                i+aQG++V+ LK++k +  +++++VakLL+ Kk++ 
  MMETSP0890-20130614|4791_1  1 IKAQGEKVKGLKEAKGDAGAIQEEVAKLLDYKKKLT 36
                89********************************94 PP

  == domain 2    score: -6.1 bits;  conditional E-value: 4
                H-----HHHHHHHH CS
  PF00458.15 16 KaekapkedvdaaV 29
                Ka+  +  + +aaV
  MMETSP0890-20130614|4791_1 80 KAAEEEAKVKKAAV 93
                33333333455555 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0031        11     104     169 ..     332     402 ..     316     404 .. 0.68
   2 ?    6.7   0.0   0.00092       3.1     217     235 ..     558     576 ..     546     585 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0031
  PF01409.15 104 kiisigrvfRrda.vDathlaeFhqv..eglvvdenvsladlkgvl.eeflkklfgae..vkvrfrpsyfpf 169
                 k+  ig vfR ++   ++hl eF+ +  e+ + ++ +++ dl g l ++++  l  ++  ++++   + +pf
  MMETSP0890-20130614|4791_1 332 KVYEIGPVFRAEDsNTRRHLCEFTGMdlEMSIKEHYFEVLDLFGRLfNHIFATL-QQQcaTELQTISQVYPF 402
                 677899****98868899*****8651156666667777777765425566666.33324566666666666 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00092
  PF01409.15 217 GlGveRlamlkygieDiRe 235
                 G+G+eR+ ml +  ++iR+
  MMETSP0890-20130614|4791_1 558 GIGLERVVMLFTATTNIRK 576
                 9*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.84
# Mc/sec: 1680.30
//
Query:       MMETSP0890-20130614|4790_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.76   10.1   0.1       0.76   10.1   0.0    3.3  5  PF12553.3 Protein of unknown function (DUF3742)


Domain annotation for each model (and alignments):
>> PF12553.3  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.61   8.4e+03      29      42 ..     103     115 ..      82     115 .. 0.65
   2 ?   -4.0   0.6         1   1.4e+04       2      11 ..     172     181 ..     172     182 .. 0.83
   3 ?   -1.7   0.3      0.27   3.7e+03       3      16 ..     189     202 ..     187     206 .. 0.72
   4 ?   10.1   0.0   5.5e-05      0.76       2      39 ..     218     256 ..     217     259 .. 0.85
   5 ?   -6.3   3.6         1   1.4e+04       4      14 ..     283     293 ..     282     301 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.61
   PF12553.3  29 eekdepewRnGpaG 42 
                 + ++  +w +G +G
  MMETSP0890-20130614|4790_1 103 R-ETRAQWVYGMDG 115
                 2.234677777776 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1
   PF12553.3   2 ALlllflaiA 11 
                 ALl+ ++++A
  MMETSP0890-20130614|4790_1 172 ALLVRVAVVA 181
                 7899999988 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.27
   PF12553.3   3 LlllflaiAawlar 16 
                 L+llfl   aw+a 
  MMETSP0890-20130614|4790_1 189 LVLLFLFGIAWAAE 202
                 67777777788776 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 5.5e-05
   PF12553.3   2 ALlllflaiAawlarnpda.dedgfdddeekdepewRnG 39 
                 AL+++f ++Aa  ++   +  ed+ ddde +   e++nG
  MMETSP0890-20130614|4790_1 218 ALVVAFFLAAASHYTELWHvYEDIVDDDENDMVAEKKNG 256
                 8999999999999999876345*******8777999998 PP

  == domain 5    score: -6.3 bits;  conditional E-value: 1
   PF12553.3   4 lllflaiAawl 14 
                 +++ +a++ w+
  MMETSP0890-20130614|4790_1 283 VVCAAALVVWT 293
                 68999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1083.57
//
Query:       MMETSP0890-20130614|4798_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.023   14.2   0.0    1.4  1  PF03425.8 Carbohydrate binding domain (family 11)


Domain annotation for each model (and alignments):
>> PF03425.8  Carbohydrate binding domain (family 11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.7e-06     0.023      45     111 ..      69     182 ..      44     215 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-06
   PF03425.8  45 alevkyd.gyssgyavdvaydldkg.dws................................afgglsFdv.............ksdgaanevrleikdvgdyelwlasvkaskt 111
                 +l+++ d +  s+ a++v ++ d++ d++                                  +g+sF++             +s+g  +++ +e  d+++++l++ +vka+k 
  MMETSP0890-20130614|4798_1  69 GLSMSFDiAQASSLAHNVGVSADESdDYNagasiyakvgrrrrlseeppedpnsirkllvsGSAGISFQHgdsisvntgrtseRSRGRNQALMIEFGDADANDLFAVRVKADKH 182
                 678888888999********999987899*****************************************************9899**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:01.07
# Mc/sec: 915.99
//
Query:       MMETSP0890-20130614|4796_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   43.8   0.0    2.8e-11   43.1   0.0    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    1.1e-08   34.7   0.0      2e-08   33.8   0.0    1.5  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    5.7e-05   22.9   0.0    0.00012   21.8   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    0.00019   21.3   0.0    0.00042   20.3   0.0    1.6  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    0.00026   21.0   0.0     0.0005   20.1   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0     1e-14   2.8e-11      31      95 .]     181     248 ..     156     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1e-14
                 HHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHH..HTTTTT.HTT-HHHHHHHHHHHHSH CS
  PF00043.20  31 rkvlevlealeeelsgkkylvGdkltlADialfpalewlqr..ldgnfl.eeefPklkawlkriaarp 95 
                  +v+++l++l+ +l++k+y++G+++t+ADia++p++  l++   +g+fl  +e+ ++ aw+ ri++rp
  MMETSP0890-20130614|4796_1 181 LEVKRQLSVLDIQLEDKQYICGNEYTIADIAIYPWILTLDSgyKGGEFLgISEYTNIAAWVHRISQRP 248
                 5899*******************************996554113444446****************98 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   7.5e-12     2e-08       2      69 .]     174     243 ..     173     243 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 7.5e-12
                 HHHS--GGGTT-THGGG------SS.-------HHHHHHHHHHHHHHHHH------..TT----HHHHHH CS
   PF13410.1   2 aaleraraqlraaLdaleahLadgpfllGdrpslaDialapflvrldaagpgldir..eayPnlrawler 69 
                 +a++r+  ++++ L++l+ +L+d+ +++G++ ++aDia++p++  ld  + g +++  ++y n++aw+ r
  MMETSP0890-20130614|4796_1 174 YAIDRFALEVKRQLSVLDIQLEDKQYICGNEYTIADIAIYPWILTLDSGYKGGEFLgiSEYTNIAAWVHR 243
                 67888888999***************************************99999999*********987 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.4e-08   0.00012      13      69 ..      71     128 ..      57     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.4e-08
                 HH----EEEEEEH....TTSHHHHH.HHH------SEEE.----.EEESHHHHHHHHHH CS
   PF13409.1  13 alkgledeisvvplepkgfekseel.lalsprgtVPvLwdkdgt.vineSseIlrylne 69 
                 +lkg+e++   +    +g +++ e+  +l+p+ ++P+L dkd +  ++eS  Il +l+e
  MMETSP0890-20130614|4796_1  71 ELKGIEYDAWKI-NISQGDQFGSEYvDKLNPNSKIPALYDKDLQaRVFESGSILMHLAE 128
                 578999995444.345777777787468*************9998999******99987 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-07   0.00042      21      76 .]      72     128 ..      51     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.5e-07
                 HTT--EEEEEEGTTCCHCHH.HHHHHHCTTTS-SSEEEET.TTEEEESHHHHHHHHHH CS
  PF02798.15  21 ekgveyeivrvdfeagegks.pewlklnpkigrvPaledg.dglklteSlAIarYlar 76 
                  kg+ey+  ++++++g +   +   klnp+ +++Pal d+  +  ++eS+ I+++la+
  MMETSP0890-20130614|4796_1  72 LKGIEYDAWKINISQGDQFGsEYVDKLNPN-SKIPALYDKdLQARVFESGSILMHLAE 128
                 789999999999988887765667799***.*********75689***********96 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.8e-07    0.0005      18      72 ..      71     131 ..      55     139 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.8e-07
                 HH----EEE----..TTTT..HHHHHHH-TT--SSEEE--..--EEESHHHHHHHHHHH-- CS
   PF13417.1  18 eekglpyelvevt..pgkk..rpellalnpkgkvPvLedd..gevltdSlvIieyLeerfp 72 
                 e+kg++y   +++   g+   ++ + +lnp+ k+P+L+d   +  +++S +I+ +L e+++
  MMETSP0890-20130614|4796_1  71 ELKGIEYDAWKINisQGDQfgSEYVDKLNPNSKIPALYDKdlQARVFESGSILMHLAEKYQ 131
                 4678999986665334443558888999*********97647779*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.12s 00:00:00.63 Elapsed: 00:00:00.85
# Mc/sec: 775.29
//
Query:       MMETSP0890-20130614|4800_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-06   25.5   0.2    1.3e-05   24.6   0.1    1.4  1  PF07671.6  Protein of unknown function (DUF1601)
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.011   15.2   0.0    1.1  1  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   1.9e-09   1.3e-05      17      36 ..      10      33 ..       7      33 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.9e-09
   PF07671.6 17 LlaAIr....rnaerFNpQsIANt 36
                L++AI+    +   rFNpQ+IANt
  MMETSP0890-20130614|4800_1 10 LFNAIAaaalKKLDRFNPQDIANT 33
                99*********************9 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.7e-06     0.011      21      65 ..      10      54 ..       4      59 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.7e-06
  PF06743.10 21 ffeklasalereLdsispelllnlvwSlclleyfpvellnkvlsp 65
                +f+++a a  ++Ld ++p++  n+ w+++ +     + + +++sp
  MMETSP0890-20130614|4800_1 10 LFNAIAAAALKKLDRFNPQDIANTTWAFATASGSSSDIFVALFSP 54
                899**************************9988887777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 246.90
//
Query:       MMETSP0890-20130614|4806_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-09   37.6   0.0    1.3e-09   37.3   0.0    1.1  1  PF05970.9 PIF1-like helicase


Domain annotation for each model (and alignments):
>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.3e-14   1.3e-09     146     364 .]       5     234 ..       1     234 [. 0.81

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 9.3e-14
   PF05970.9 146 lgGDfrQilPviekgsrae.ivaasikeSklWkevkvleLtknmRllsesldetekeelkeFsdwllkigdGkineedeee........alieiPe..dlllkkse..dkieeivsevypdllqnltdeeyleerailaptneeveeiNnyils....klpgeekeylssDsvs..ksseeieeadalypteflnslkas...glpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivtql 364
                   GD +Qi Pvie++  ++ i++ s  +S+l  ++  l+L + +R +s+           +++ ++ ++  G+i++   +          +i++P   +l+ ++s+  + +++  s +++d +++l+++   + ++i++ +++  +  N+y+ +    + ++  k+y+++ ++   + +e   + d  y++e+l++l+ +   g+p+  L    G + +l   ld +aGL    r+i+ +l
  MMETSP0890-20130614|4806_1   5 YIGDEKQITPVIENTDDPSfIMDQSFASSPLLARCFRLRLYRSIRNSSD----------PDWAAFIDEVSTGEISAVPGHVnnnetigrRIIRLPMvtNLF-NTSSnpSAMQQACSWTFGDDCNDLHNPVTNQYNTIVCLKHKRRRIYNEYVSKrraaQTKARSKHYYATHKLEipEGDEIPLDEDCPYNNEMLQELHSDnngGVPDGDLFFHEGDVALLAVSLDRAAGLAKNMRVIIRNL 234
                 56************99987356789*********************998..........799999999999999876443344557788999*99631444.5555235689999****************************99999999875111166777899***998652145555568899**********76522379******************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:01.06
# Mc/sec: 825.16
//
Query:       MMETSP0890-20130614|4814_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 256.51
//
Query:       MMETSP0890-20130614|4819_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-36  126.0   0.3    1.5e-36  125.8   0.2    1.0  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.2   1.1e-40   1.5e-36      25     154 ..       2     132 ..       1     133 [. 0.85

  Alignments for each domain:
  == domain 1    score: 125.8 bits;  conditional E-value: 1.1e-40
  PF00160.16  25 venFlklakeg....fYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVveg.mdvvekieavetde.kpeknvkiksvg 154
                 +enF+ l++ g     ++g++fhrvi+gfm+qgGd++  +   +++    ge+++dE+  ++lkh  +G+l+ma+   +pn+ngsqFf++++++++lDgk++vFG++v+g +dvv++ie+v++++  ++++v+i ++g
  MMETSP0890-20130614|4819_1   2 AENFRALCT-GekgfGFKGSSFHRVIPGFMCQGGDFTRGDG--TGGkSIYGEKFEDEN--FRLKHtGPGILSMANA--DPNTNGSQFFLCTAKTQWLDGKHVVFGQIVDGtFDVVKQIEKVGSESgDTSRPVIIADCG 132
                 79******7.335678*******************887755..3222444446*****..57788688******87..59****************************9989*******977666688888*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 475.75
//
Query:       MMETSP0890-20130614|4818_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   27.0   0.0    3.1e-06   26.2   0.0    1.3  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.3e-10   3.1e-06       5      58 ..      61     117 ..      55     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.3e-10
                 SEEEEEEECTTSBHHHHHHHHHHHHT..S-GGGEEEEE---BE.TTTSBTTTTTT-T CS
  PF00240.18   5 gktitlevepsdtvselKekieekeg..ipvdqqrLiysGkvL.eDdrtlseyniqd 58 
                 +k +++e++ ++tv  lK+++++      pv  qrL+y  ++L +D+ tls+   ++
  MMETSP0890-20130614|4818_1  61 DKRCEIELDAETTVYGLKQRLSKVFPgqPPVAIQRLFYGTRFLsDDEETLSQVVAEE 117
                 35699********************99***********************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.77
# Mc/sec: 1163.94
//
Query:       MMETSP0890-20130614|4820_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-26   92.1   0.1    5.5e-26   91.0   0.0    1.6  2  PF00572.13 Ribosomal protein L13


Domain annotation for each model (and alignments):
>> PF00572.13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0     4e-30   5.5e-26       2     126 ..       7     120 ..       6     122 .. 0.89
   2 ?   -3.2   0.0      0.55   7.5e+03      10      17 ..     137     144 ..     134     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 4e-30
                 EEEE----B---HHHHHHHHH-----SS--SSS----EEEEE--TT-B----TSSS-EEEE---------EEEESTTTT.S-HHHHHHHHH------.-----TTGGGEEE----TCGGGG--S--E CS
  PF00572.13   2 iviDakgqilGrlAskiAklLlGkhkptytphvdtGdyVvvvnaekvvltGkkaeqkkykrhtgypgglkektakklle.rkperilkkaVkgmLpk.nklgrealkklkvyagsehphkaqkpekl 126
                 i +D++ ++lGrlAs iAk Ll             G++Vvvv++e+++++G    +k+   ++ ++++++++++ ++++ r+p r+++++V+gmLp+ + +g++al++l++y+g + p +++k++++
  MMETSP0890-20130614|4820_1   7 ITVDGRAHMLGRLASVIAKELL------------LGQHVVVVRCEQIIISGSLVRNKVKFAQFLKKRTNTNPKK-GPIHyRSPARMFWRVVRGMLPHkTYRGQQALSRLQCYEGIPTPWDKKKKVVV 120
                 689*******************............*****************77777776666999****99999.56665*****************999******************666576665 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.55
                 B---HHHH CS
  PF00572.13  10 ilGrlAsk 17 
                  lGrlAs+
  MMETSP0890-20130614|4820_1 137 LLGRLASE 144
                 79****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:01.38
# Mc/sec: 413.28
//
Query:       MMETSP0890-20130614|4828_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       109  (0.0079725); expected 273.4 (0.02)
Passed bias filter:                      109  (0.0079725); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.30s 00:00:00.59 Elapsed: 00:00:00.71
# Mc/sec: 175.51
//
Query:       MMETSP0890-20130614|4831_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   27.5   0.2    2.3e-06   27.0   0.2    1.2  1  PF05739.14 SNARE domain
  ------ inclusion threshold ------
      0.026   14.7   0.0      0.032   14.4   0.0    1.1  1  PF07173.7  Protein of unknown function (DUF1399)


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   3.3e-10   2.3e-06       1      61 [.      35      95 ..      35      97 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 3.3e-10
                HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF05739.14  1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalry 61
                e++ e++ l++++  Lk++++d+++ veeQ+  l+++ + +  a   + ++++ l++++r+
  MMETSP0890-20130614|4831_1 35 ENNAEIDALSDQVALLKSITQDLNRDVEEQNLFLEKMGSGFAGAGQVIGKTMTSLDTMSRS 95
                7899*************************************99999999999999999886 PP

>> PF07173.7  Protein of unknown function (DUF1399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.6e-06     0.032      41      84 ..      34      76 ..       3      86 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.6e-06
   PF07173.7 41 prepfelelislsvsstaskiseDlvsavkrqskfvekvsspli 84
                 ++  e+++ s++v +  ++i++Dl+  v+ q+ f+ek+ s ++
  MMETSP0890-20130614|4831_1 34 RENNAEIDALSDQV-ALLKSITQDLNRDVEEQNLFLEKMGSGFA 76
                34556677777777.999*********************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       984  (0.0719719); expected 273.4 (0.02)
Passed bias filter:                      829  (0.0606349); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:01.30
# Mc/sec: 241.48
//
Query:       MMETSP0890-20130614|4834_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.4    6.0 100.0       0.11   11.6   6.3    8.3  5  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.3   8.4e-06      0.11       6      31 ..      11      36 ..       1      37 [. 0.71
   2 ?  -11.4  19.1         1   1.4e+04       2      35 ..      42      74 ..      40     108 .. 0.75
   3 ?    8.9   9.0     6e-05      0.82       2      32 ..     115     145 ..     114     153 .. 0.70
   4 ?    8.6   7.6   7.2e-05      0.98       7      35 ..     136     164 ..     132     165 .. 0.88
   5 ?  -12.9  22.5         1   1.4e+04       4      35 ..     177     201 ..     150     211 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.4e-06
   PF04886.7  6 PteqPTvqPTgqPtaqPTdqPtaqPt 31
                 +++P+vqP+  P+ +PT+ Pt  Pt
  MMETSP0890-20130614|4834_1 11 TSAEPSVQPSSVPVRNPTSDPTLLPT 36
                35688888888888888888886665 PP

  == domain 2    score: -11.4 bits;  conditional E-value: 1
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                pT  P+e P++ P+  P +qPT  P++ Pt++P+
  MMETSP0890-20130614|4834_1 42 PTGVPSESPSELPSLIPEPQPTVLPGN-PTSQPI 74
                666666666666666666666655554.555554 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 6e-05
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32 
                 +T++P++ PT  PT++ +   T qPt  Pt+
  MMETSP0890-20130614|4834_1 115 STERPSGLPTASPTAAFSESITEQPTGLPTA 145
                 59999999*****999866555555555554 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 7.2e-05
   PF04886.7   7 teqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 teqPT+ PT+ ++  +T+ Pta P   Pt
  MMETSP0890-20130614|4834_1 136 TEQPTGLPTATLSEPTTQLPTAVPIPRPT 164
                 9**********************976666 PP

  == domain 5    score: -12.9 bits;  conditional E-value: 1
   PF04886.7   4 aqPteqPTvqPTgqPta.qPTdqPtaqPtdaPt 35 
                 a Pt          P++ qPT +Pt+ P+ aPt
  MMETSP0890-20130614|4834_1 177 ASPT--------QIPSStQPTLSPTSFPSVAPT 201
                 3333........333211333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                       93  (0.00680222); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 654.29
//
Query:       MMETSP0890-20130614|4832_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-25   88.0   0.5    4.8e-25   87.1   0.3    1.5  1  PF05198.11 Translation initiation factor IF-3, N-terminal domain
    3.6e-22   77.7   0.5    5.7e-22   77.1   0.3    1.3  1  PF00707.17 Translation initiation factor IF-3, C-terminal domain


Domain annotation for each model (and alignments):
>> PF05198.11  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.3     7e-29   4.8e-25       6      75 ..       1      74 [.       1      75 [. 0.92

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 7e-29
  PF05198.11  6 iNeeIrareVrli....dedgeqlGvvstreAlrlAeekglDLVevspnakpPvckimdYgkfkYeqkkkkkea 75
                +Ne+I+a++ r+i    d+ +e+lGv+s++eAl++A++ g+DLV+++++++pPvcki+dYgk +Y ++kkkke+
  MMETSP0890-20130614|4832_1  1 MNEQITASQLRVIidrgDQPDEALGVISREEALQKADDLGVDLVLIAEKSDPPVCKIVDYGKLRYAKEKKKKEQ 74
                7************4444444578**************************************************8 PP

>> PF00707.17  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.3   8.3e-26   5.7e-22       2      87 ..      81     168 ..      80     169 .] 0.90

  Alignments for each domain:
  == domain 1    score: 77.1 bits;  conditional E-value: 8.3e-26
  PF00707.17   2 vevKEiklrpkidehDlevKlkqakkFLekgdkVkvtirfrGReiahkelgkevldrvaeelediakvekkp..klegrqmtmilapk 87 
                  e+KE+k+++ki+e D++v+ + a kF ++g +Vk++i+frGRe++h +lg +++ r+++ele+ ++  +k     egr +t il+ k
  MMETSP0890-20130614|4832_1  81 NEIKEVKMSYKIGEADYQVRRRAAVKFVQAGMRVKLVIQFRGREQQHINLGDDLIARFISELEEEGAPVQKTktVREGRDLTTILSLK 168
                 58************************************************************8776655555256799****999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       862  (0.0630486); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 586.93
//
Query:       MMETSP0890-20130614|4836_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-31  108.0   0.7    7.4e-31  106.9   0.5    1.6  1  PF09440.5  eIF3 subunit 6 N terminal domain
      4e-12   46.2   0.4    1.6e-11   44.2   0.0    2.3  3  PF01399.22 PCI domain
     0.0015   18.4   2.3      0.055   13.4   0.0    3.0  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.025   13.8   0.3       0.12   11.6   0.0    2.2  2  PF10602.4  26S proteasome subunit RPN7
        1.6    8.6   5.1        7.9    6.3   0.0    3.8  5  PF10779.4  Haemolysin XhlA


Domain annotation for each model (and alignments):
>> PF09440.5  eIF3 subunit 6 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.5   2.7e-34   7.4e-31       9     132 ..       2     124 ..       1     125 [. 0.98

  Alignments for each domain:
  == domain 1    score: 106.9 bits;  conditional E-value: 2.7e-34
   PF09440.5   9 yLDrHLifPLLeflaakeiydekellkaklellkkTnmvDyvadlekeleneeeipaelaekreevlkelkeleeevakilklledeevvknlrsdkkanlefLeeehgvtvemvnalykfakf 132
                 yLD HL+fPLLefl+++  y++ke+++a+lell+ TnmvDy++++++ l + e++p+e++ +r+ v+++++ le++ +++ ++l d+e v++lr++   n   L e h+++++ ++  y fakf
  MMETSP0890-20130614|4836_1   2 YLDVHLVFPLLEFLEENTAYEDKEVQHARLELLAPTNMVDYAIEIHTAL-TGETEPKEMSGRRDAVFETMESLESKLESVRQVLRDQEQVDALRQEGCLNPTGLLERHEFSAQILDEFYVFAKF 124
                 8************************************************.88888********************************************************************9 PP

>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.9   1.1e+04      84      97 ..     174     187 ..     163     189 .. 0.71
   2 ?   -2.4   0.1         2   5.4e+03      35      56 ..     246     267 ..     227     283 .. 0.62
   3 !   44.2   0.0     6e-15   1.6e-11       3     105 .]     295     398 ..     293     398 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.9
                 HHH-------B-S- CS
  PF01399.22  84 lIadgelrakidqp 97 
                 l+   +++a+id+ 
  MMETSP0890-20130614|4836_1 174 LVDLLRIKANIDER 187
                 44555788888875 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2
                 XXX------HHHHHHHHHHHHH CS
  PF01399.22  35 lsqllesLekkvrerllrqvsk 56 
                 ++ ++++ ++++++ l+r v++
  MMETSP0890-20130614|4836_1 246 TAVIINKRRRSTIKDLVRIVTQ 267
                 4456677777777777776666 PP

  == domain 3    score: 44.2 bits;  conditional E-value: 6e-15
                 XXXXXXXXXXXX.XXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE--- CS
  PF01399.22   3 ysdllkalrsgn.lsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfkk 105
                 ++ ++ +l+s+  ++g++++l+++e+ l ad +l  + + + + +r  l   +++i++++++ +la +ld++   +E+++++lI+  +l+akid+++ +v++++
  MMETSP0890-20130614|4836_1 295 VITFIDCLYSKFdFEGAQKTLRECEKALRADYFLCNCASAFMEDARICLHDAYCRIHTKVDITDLAAKLDMDALAAERWIADLIRGALLDAKIDSQNSCVIMNN 398
                 5666777777766****************************************************************************************985 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     2e-05     0.055      47      82 ..     104     139 ..     100     141 .. 0.90
   2 ?    3.2   0.2     0.032        88      24      69 ..     293     343 ..     278     345 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-05
                 HHHCTSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHH CS
   PF12895.2  47 llrkleldssslgcryllArcllklgkydeAiavLe 82 
                 ll+++e++++ l+  y++A+ l+++g+y+eA + Le
  MMETSP0890-20130614|4836_1 104 LLERHEFSAQILDEFYVFAKFLYECGDYQEAHDMLE 139
                 56778899999999*****************99997 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.032
                 HHHCHHHHHHHHHH---HHHHHHHHHC..TSHCHCB....HHHHHHH.HHHHH CS
   PF12895.2  24 edaylyalAlclylngeykrAyellrk..leldsss....lgcryll.Arcll 69 
                 + +  +    cly+  +++ A + lr+  + l++      ++++++  Ar +l
  MMETSP0890-20130614|4836_1 293 DPVITF--IDCLYSKFDFEGAQKTLREceKALRADYflcnCASAFMEdARICL 343
                 333555..89***************8887555554433224445566666665 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.12      40     117 ..     119     198 ..     106     259 .. 0.86
   2 ?   -1.0   0.0      0.32   8.8e+02      58      97 ..     403     442 ..     402     447 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
   PF10602.4  40 edlaehYlkigdleeAlkaysr.ardyc.tslkhkidmllnvirvsiffndwslvskylekaksllekggdwerrnrlkv 117
                 + +a++ +++gd++eA  +++     y+ +++kh +d l      +i +++w+ ++  l ++k+ +++  d++   +l++
  MMETSP0890-20130614|4836_1 119 YVFAKFLYECGDYQEAHDMLELyLEIYTgINTKHYLDALWGKFASEILLKNWENALVDLLRIKANIDERSDKSPLEQLQQ 198
                 5689************9999994444443689************************************999766665555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.32
   PF10602.4  58 aysrardyctslkhkidmllnvirvsiffndwslvskyle 97 
                  ys++ d++  l    + l+n i ++i +nd +   + l+
  MMETSP0890-20130614|4836_1 403 VYSQVIDKTRDLFLRSNALINNIDLKILANDRKIQAQQLA 442
                 59999999999999999*************9987666665 PP

>> PF10779.4  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.2   6.1e+03      18      33 ..      17      32 ..      13      33 .. 0.64
   2 ?   -1.3   0.1      0.69   1.9e+03       8      23 ..      70      85 ..      45      97 .. 0.58
   3 ?    1.6   0.0     0.087   2.4e+02       2      22 ..     171     191 ..     170     203 .. 0.71
   4 ?    6.3   0.0    0.0029       7.9      41      62 ..     228     249 ..     226     251 .. 0.91
   5 ?   -2.6   0.0       1.8   4.8e+03      10      27 ..     349     365 ..     349     381 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.2
   PF10779.4 18 eekaenalEkadaale 33
                e++a +++E + a+le
  MMETSP0890-20130614|4836_1 17 ENTAYEDKEVQHARLE 32
                5566677777777765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.69
   PF10779.4  8 lnrietklkeeekaen 23
                ++ +e+kl++ ++ ++
  MMETSP0890-20130614|4836_1 70 MESLESKLESVRQVLR 85
                3444555555444444 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.087
   PF10779.4   2 qdikerlnrietklkeeekae 22 
                 ++  ++l ri+ +++e++++ 
  MMETSP0890-20130614|4836_1 171 ENALVDLLRIKANIDERSDKS 191
                 5677999********865543 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0029
   PF10779.4  41 kdLskIkknlkWilrtiiGaiv 62 
                 k L  I+ n  W+lr++++a++
  MMETSP0890-20130614|4836_1 228 KYLQAIQTNCPWLLRYLATAVI 249
                 57999***************99 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 1.8
   PF10779.4  10 rietklkeeekaenalEk 27 
                 ri+tk++ +++   +l++
  MMETSP0890-20130614|4836_1 349 RIHTKVD-ITDLAAKLDM 365
                 5777777.5554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:01.01
# Mc/sec: 1065.31
//
Query:       MMETSP0890-20130614|4839_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   52.4   2.1    1.4e-09   37.2   0.3    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.038   14.1   0.1      0.039   14.1   0.0    1.1  1  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.3   2.1e-13   1.4e-09       6      41 .]       2      37 ..       1      37 [. 0.95
   2 !   15.3   0.0   1.7e-06     0.012       1      18 [.      39      56 .]      39      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 2.1e-13
                HHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  6 qavieaGavppLvqLLksgdeevqeeAawALsNLaa 41
                 ++ eaGa+p Lv+LL+sg    +e+Aa+AL+NLaa
  MMETSP0890-20130614|4839_1  2 VTIAEAGAIPSLVNLLTSGTAVAKEYAAAALWNLAA 37
                5789******************************96 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.7e-06
                CHHHHHHHHHCHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLv 18
                +++n  +++eaGa+ppLv
  MMETSP0890-20130614|4839_1 39 NDKNNVTIVEAGAIPPLV 56
                78999************8 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.7e-06     0.039      27      60 ..       4      40 ..       2      56 .] 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.7e-06
   PF13646.1 27 lgseealpaLlelLkdsdpevRraAaeaLgklg...d 60
                ++++ a+p L+ lL++  +  ++ Aa aL +l+   d
  MMETSP0890-20130614|4839_1  4 IAEAGAIPSLVNLLTSGTAVAKEYAAAALWNLAannD 40
                678899***********************99963332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 209.68
//
Query:       MMETSP0890-20130614|4837_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00033   20.3   0.0    0.00062   19.4   0.0    1.4  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.15   11.3   0.0       0.24   10.6   0.0    1.2  1  PF11775.3  Cobalamin biosynthesis protein CobT VWA domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     9e-08   0.00062       2      73 ..      24     108 ..      23     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9e-08
                 EEEEEEESS--S-STSSSS-EEEEEEEECTTE....EEEEE--BSS-SSEEEE..EEEEEEESCGGGTE.......EEEEEEECH CS
  PF00168.25   2 kvkvieAknLpnkdkngtsdpyvkvslggaks....kkkrTrvikntlnPvWn..ekftfevvaeelae.......leleVkded 73 
                  v++ +++nLp  ++ g ++p ++ +l++a      +k+ ++ + +t++P W   e+f+f v++ + ++       l ++V +++
  MMETSP0890-20130614|4837_1  24 LVWLESGNNLPLVNVAGETNPSIRFYLEPAIEgrkkQKQDSSLKFRTTSPEWVpaERFEFIVPKVSSDDfdqedvkLLIQVSNRN 108
                 689999********999999999999999766776788***************99999998777666654446666666666655 PP

>> PF11775.3  Cobalamin biosynthesis protein CobT VWA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.6e-05      0.24     129     152 ..     128     152 ..     120     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.6e-05
   PF11775.3 129 llGrmedkkill.visdGaPvddst 152
                 l G+ e kki l + sdG+P+ ds+
  MMETSP0890-20130614|4837_1 128 LSGKKETKKIHLsMCSDGSPCPDSS 152
                 78********76377******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:01.01
# Mc/sec: 813.81
//
Query:       MMETSP0890-20130614|4851_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   11.4   0.3       0.17   11.1   0.2    1.2  1  PF01410.13 Fibrillar collagen C-terminal domain


Domain annotation for each model (and alignments):
>> PF01410.13  Fibrillar collagen C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   1.2e-05      0.17     107     164 ..      48     104 ..       4     113 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.2e-05
  PF01410.13 107 rllskearQnityhCknsvayldeatgnlkkalrlkgsndeelsaegnskltykvled 164
                 +l +++a+ n  yhC + +a++++a    ++   ++  ++e ++++++++++ + l++
  MMETSP0890-20130614|4851_1  48 HLRANQATENANYHCGRLAAIANAAR-AASRVTAIEERSEERVNEDNKNEVSTRQLDN 104
                 7889**************99888765.6677777888888888888888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 589.27
//
Query:       MMETSP0890-20130614|4854_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-33  113.2   0.2    7.1e-33  112.4   0.1    1.4  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.047   13.6   0.0    1.7  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.1     1e-36   7.1e-33       1      75 []      64     138 ..      64     138 .. 0.99

  Alignments for each domain:
  == domain 1    score: 112.4 bits;  conditional E-value: 1e-36
  PF00125.19   1 ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75 
                 s++lli+klp++R+vre+ ++f+ +lr++++a++alqea+e++l+ ++ed++l+a+hakr+ti+p+diqlA+r++
  MMETSP0890-20130614|4854_1  64 STELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 138
                 799**********************************************************************97 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.9e-06     0.047       2      64 ..      71     134 ..      70     134 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.9e-06
                 ---HHHHHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHH CS
  PF00808.18   2 eLPiarvkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaedikla 64 
                 +LP  r  + + +d + + ++  +A   ++e++e ++  l + ++  + ++kr Ti+++di+la
  MMETSP0890-20130614|4854_1  71 KLPFQRLVREIAQDfKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 134
                 78888877777777799999999**************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 466.14
//
Query:       MMETSP0890-20130614|4849_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.95
# Mc/sec: 1195.66
//
Query:       MMETSP0890-20130614|4847_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-30  103.7  22.5    9.5e-30  103.7  15.6    1.6  2  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1     0.034   4.7e+02     131     164 ..     109     143 ..      87     151 .. 0.53
   2 !  103.7  15.6     7e-34   9.5e-30       9     256 ..     140     414 ..     132     415 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.034
  PF00487.19 131 alllallilalllalagl.llllsglgalllyvvp 164
                 a+ ++l+  +++++l+++ +   ++   +++ +++
  MMETSP0890-20130614|4847_1 109 ARSKCLAASMVWALLLLAaAHSNNLIKLYTFSFIA 143
                 33444444444444444426666555555555544 PP

  == domain 2    score: 103.7 bits;  conditional E-value: 7e-34
  PF00487.19   9 alllaalllsilvnlaHealHgalfrsrrlnrvlglllalllgisslawrrsHlr.hHhytgnaekDpdsalr...........rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg.......lalllallilalllalagl.llllsglgalllyvvplalaltvlllvn...yleHyglet....ednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvrynsl 256
                  ++ +  l++++++  H+a+H a++++++ nr+l + +a++   + + w  +H+  hH++tgn ++Dpd+++            r+ +l+ ++ ++   + +++ +++ ++  + ++ + +r +l+k ++           +  l +l+++++l+l +  ++l+ +l a ++y+v   +++   +l      ++H+ l       +  +a+  ++ + +++s +  ++ + +++g+lny+ieHHl P+v+++ +pe++p++++++++ +++y+++
  MMETSP0890-20130614|4847_1 140 SFIAGIQLIVWGLIQFHDASHFAFSGGYTSNRALTAAWAAVAYWPAWLWHAHHVEaHHANTGNYDHDPDLRHGapfmrktpvapRRRYLDLSAMGQLCAMAIAPGMYAGSVLQYAIIRFGIRKSLWKMHALTPppsnftaFWEYLLALWYPIWLTLCIQsYGLFPALLATFFYLVGCNATYAANILPDhdtSASHANLAKlindQKIGNAQPSWAATQVAASANFAGPCWGFFFGGLNYQIEHHLLPRVHHSFYPEIAPIVKAACAKFNLPYVHY 414
                 4455555566666667*************************6666666*******9********************999999999999999999999999999999999999999999999999999988888**99988777777888888888888889999999999999999999999999999553333666655***6444444444444445555599***********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.83
# Mc/sec: 1276.13
//
Query:       MMETSP0890-20130614|4857_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   15.4   0.1      0.013   14.8   0.1    1.4  1  PF03945.9 delta endotoxin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF03945.9  delta endotoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   9.3e-07     0.013      42     121 ..     155     233 ..     122     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.3e-07
   PF03945.9  42 tweaflkqveelidqkiseqvrnkaiaeleglknsldsYqealeeWeknpnnansreevrsrfeeleskfenaipsfavs 121
                  +++fl+ + + i+q+i++++  +a + l ++  s d + +     ekn  +++  + +r++++el +++++++p+ +++
  MMETSP0890-20130614|4857_1 155 HVQNFLNTIAQRIQQEIEASIYGDAATALRNILASPDPISSLHCFLEKNIFDSS-SSSMRQQLTELAREVRQNLPDESTR 233
                 789******************************999998877777777777777.799*****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:01.60
# Mc/sec: 410.38
//
Query:       MMETSP0890-20130614|4859_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:01.10
# Mc/sec: 202.60
//
Query:       MMETSP0890-20130614|4862_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00048   19.9   4.6     0.0011   18.7   3.2    1.6  1  PF00008.22 EGF-like domain
    0.00069   17.8   0.0     0.0021   16.3   0.0    1.8  1  PF02480.11 Alphaherpesvirus glycoprotein E
     0.0071   16.2   0.9      0.017   15.0   0.6    1.7  1  PF12661.2  Human growth factor-like EGF
  ------ inclusion threshold ------
       0.14   12.1  16.0      0.029   14.4   8.1    2.1  2  PF07974.8  EGF-like domain


Domain annotation for each model (and alignments):
>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.2   3.2e-07    0.0011       1      32 []     201     231 ..     201     231 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.2e-07
                 TTTTTCSS--EEEEECCTEEEEE--TTCTTTE CS
  PF00008.22   1 CspnpCsngGtCvdtpgggytCeCpeGytGkr 32 
                 C++  Cs++G C++ + +  +C C++G++G r
  MMETSP0890-20130614|4862_1 201 CDSAHCSHRGHCTSRG-SVIQCACKSGFSGAR 231
                 66667***********.*************76 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.1e-07    0.0021     354     436 ..     409     485 ..     365     506 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.1e-07
  PF02480.11 354 llaavlgaavlllvvlllvlvcvtkrrrrkayekrlspfspvYtsLPtnelvedvsedeesedeevdvdeeeeasdkaeksgS 436
                   a++l+ a+ ++v+ll++++c+  ++ r+++     +++p+Y ++Pt e+   + ed  + d+   ++++++++  +++++S
  MMETSP0890-20130614|4862_1 409 ENAGILVPALGVIVALLALCACLGSKCCRSSSS--NTGSAPKYDKVPTIEPKSTDLEDPAKLDQV--MAQRSQRD--RRSEQS 485
                 567889999*******************99999..8899************33333343333333..22222222..222222 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.6     5e-06     0.017       1      13 []     220     232 ..     220     232 .. 0.96

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5e-06
   PF12661.2   1 kCqCppGyTGdnC 13 
                 +C C++G++G++C
  MMETSP0890-20130614|4862_1 220 QCACKSGFSGARC 232
                 6************ PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   8.1   8.4e-06     0.029       1      32 []     201     232 ..     201     232 .. 0.87
   2 ?   -3.1   0.1       2.5   8.5e+03      11      15 ..     309     313 ..     302     315 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.4e-06
   PF07974.8   1 CsadgliCgghGtCvkq..cgkCvCdsgyqGktC 32 
                 C +    C+++G+C +     +C C+sg++G+ C
  MMETSP0890-20130614|4862_1 201 CDSA--HCSHRGHCTSRgsVIQCACKSGFSGARC 232
                 6533..3********99**668************ PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.5
   PF07974.8  11 hGtCv 15 
                 +G Cv
  MMETSP0890-20130614|4862_1 309 DGVCV 313
                 89998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       773  (0.0565389); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:01.35
# Mc/sec: 1132.50
//
Query:       MMETSP0890-20130614|4871_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-47  157.9   0.1    9.8e-47  157.7   0.1    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme
    7.1e-05   22.5   0.1    9.1e-05   22.2   0.0    1.4  1  PF05773.17 RWD domain
     0.0002   20.9   0.1    0.00034   20.1   0.1    1.4  1  PF05743.8  UEV domain
  ------ inclusion threshold ------
       0.12   10.6   0.0       0.16   10.2   0.0    1.1  1  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.1   2.9e-50   9.8e-47       1     138 [.      21     155 ..      21     157 .. 0.95

  Alignments for each domain:
  == domain 1    score: 157.7 bits;  conditional E-value: 2.9e-50
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                 rlqkel++l  +  +g++a ++++ ++lew ++i+g egtpY+g  +kl+++fp++YP+++P++kfvt+++HPnvd++G+icldiLke+ Ws+a++++++Lls+q ll +pn +spln++aa+l+  ++e+y++ +ke
  MMETSP0890-20130614|4871_1  21 RLQKELMTLMMDAVPGVSAFPKSE-SMLEWIGTIEGTEGTPYHGMSYKLSLNFPQDYPYTAPTIKFVTPCWHPNVDPQGNICLDILKEK-WSAAYSVKTILLSLQTLLGDPNCDSPLNTHAAQLWD-DQEKYTTVLKE 155
                 89*********************8.**************************************************************66.********************************8887.55578877665 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.7e-08   9.1e-05      42      96 ..      57     113 ..      14     147 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.7e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  PF05773.17  42 esessklpsleleirlpedYPeeaPiitlsstelsl..kelrkrleekleelaeenl 96 
                 e +  +  s++l   +p+dYP++aP i++ +++     + + + + + l+e++   +
  MMETSP0890-20130614|4871_1  57 EGTPYHGMSYKLSLNFPQDYPYTAPTIKFVTPCWHPnvDPQGNICLDILKEKWSAAY 113
                 4455566799******************76665444488888888888888887665 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   9.8e-08   0.00034      32     111 ..      50     122 ..      23     135 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.8e-08
                 EEEEE--EE--------EE-EEEE--TTTTTS--EE.EE-GCC--TSGGGGGB-----B--HHHHS.--TTT--HHHHHHHH CS
   PF05743.8  32 llnlkGtipveykgatyniPiliwvpesyPveaPiv.yvkptksmvikknenvdaqGrvylpyLee.Wkreksnlvslvqel 111
                 + +++Gt  + y+g++y++   +  p++yP++aP++ +v p  +       nvd+qG++ l++L+e W+  ++++ +++ +l
  MMETSP0890-20130614|4871_1  50 IGTIEGTEGTPYHGMSYKL--SLNFPQDYPYTAPTIkFVTPCWH------PNVDPQGNICLDILKEkWSA-AYSVKTILLSL 122
                 3345566667777777775..6778*********8747777654......79************862766.44444444333 PP

>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.6e-05      0.16     318     360 ..      11      51 ..       5      53 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.6e-05
  PF00022.14 318 GGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiG 360
                 GG+s   g+t+Rl+kel++l+++     ++a ++  ++  WiG
  MMETSP0890-20130614|4871_1  11 GGSS-STGITKRLQKELMTLMMD-AVPGVSAFPKSESMLEWIG 51 
                 6655.68************6555.6677777777888888988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.78
# Mc/sec: 497.70
//
Query:       MMETSP0890-20130614|4878_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-08   32.5   0.0    4.8e-07   29.2   0.0    2.0  1  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.099   12.2   0.1        0.2   11.2   0.0    1.7  1  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   7.1e-11   4.8e-07      15      38 ..      22      45 ..       5      46 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 7.1e-11
                EEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27 15 tcvafspdgpllasgSrDgtirlW 38
                + +afspdg +++++S Dg+ r+W
  MMETSP0890-20130614|4878_1 22 RGCAFSPDGERIITASGDGKARVW 45
                789********************* PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     3e-05       0.2      13      24 ..      23      34 ..      20      50 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3e-05
                EEEE-----EEE CS
   PF07676.7 13 ePawSPDGkkiv 24
                + a+SPDG +i+
  MMETSP0890-20130614|4878_1 23 GCAFSPDGERII 34
                679*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 181.44
//
Query:       MMETSP0890-20130614|4880_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-08   33.8   0.0      2e-08   33.5   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    2.3e-07   30.1   0.0    2.8e-07   29.8   0.0    1.1  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.9e-12     2e-08     185     253 ..       2      73 ..       1      79 [. 0.79

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2.9e-12
                 HHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-B..S---TTS.BHHHHHHHHHHT-SSGGGS--HH CS
  PF07714.12 185 ksDvWsfGvllwEiftlgespypglsneevlell.kegkr..lekpekc.peelyelmkqCweeepeeRptfk 253
                 k Dv++fG++l+Ei+t  ++p++g+  +e+++++  e+ r  +++ +k+ ++ l +++++Cw ++ +eRp+++
  MMETSP0890-20130614|4880_1   2 KVDVYAFGMILYEIIT-RKEPWAGFGVTEIITAVtLEDDRpvISASAKAeHPILTSIVEECWVQKGSERPSLR 73 
                 78**************.56******99999998865555523333333314457899*************997 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   4.2e-11   2.8e-07     179     252 ..       2      73 ..       1      78 [. 0.88

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 4.2e-11
                 HHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HH CS
  PF00069.20 179 kvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltae 252
                 kvDv+++G+ilye++t+k p+ g   ++    +  + ++++ + + k ++  + l++++++++ ++ ++R++++
  MMETSP0890-20130614|4880_1   2 KVDVYAFGMILYEIITRKEPWAGFGVTEIITAVTLEDDRPVISASAKAEH--PILTSIVEECWVQKGSERPSLR 73 
                 8***********************88888888888888888888777755..9******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 510.70
//
Query:       MMETSP0890-20130614|4883_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.87
# Mc/sec: 336.04
//
Query:       MMETSP0890-20130614|4882_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-06   25.8  14.9     0.0025   17.5   9.4    2.3  2  PF00170.16 bZIP transcription factor
     0.0078   15.9  15.2      0.029   14.0  10.6    2.0  1  PF07716.10 Basic region leucine zipper
      0.008   14.1   7.4     0.0097   13.9   5.1    1.1  1  PF10174.4  RIM-binding protein of the cytomatrix active zone
  ------ inclusion threshold ------
       0.02   13.7   5.0      0.025   13.4   3.5    1.2  1  PF07767.6  Nop53 (60S ribosomal biogenesis)
        0.1   12.2   2.7       0.28   10.8   1.0    2.3  3  PF02183.13 Homeobox associated leucine zipper
       0.26   11.0   8.2       0.39   10.5   5.7    1.3  1  PF11559.3  Afadin- and alpha -actinin-Binding
        0.3   10.5   6.7        0.4   10.1   4.6    1.2  1  PF04156.9  IncA protein
       0.41   10.8   3.9        1.1    9.5   2.6    1.8  2  PF06156.8  Protein of unknown function (DUF972)
        8.9    6.5   9.5         32    4.7   6.2    2.2  2  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   9.4   1.7e-06    0.0025       3      51 ..      69     117 ..      67     118 .. 0.86
   2 !    9.1   0.1   0.00074       1.1      24      63 ..     111     150 ..     106     151 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.7e-06
                 XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HH CS
  PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                 e ++   +++NR+ Ar sRqRK++++e L+e+  +L+   k+  +e+ +
  MMETSP0890-20130614|4882_1  69 ECRKKLLRERNRIHARLSRQRKRQRLEALQEENTTLQRDCKKAHEEILR 117
                 5678889*************************99999887777777665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00074
                 HHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16  24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   +ei +L+   +e ++eN++L+  ++   ++ ++l +++
  MMETSP0890-20130614|4882_1 111 AHEEILRLRGLLEECDNENSRLRAWVDGVMQTEPSLSNKN 150
                 46899********************999999999998887 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0  10.6   1.9e-05     0.029       9      51 ..      76     118 ..      66     137 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.9e-05
  PF07716.10   9 RrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqL 51 
                 R+rNr+ Ar sR++k+++ e l+e+   L+++  + ++++  L
  MMETSP0890-20130614|4882_1  76 RERNRIHARLSRQRKRQRLEALQEENTTLQRDCKKAHEEILRL 118
                 99*****************************999999988877 PP

>> PF10174.4  RIM-binding protein of the cytomatrix active zone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   5.1   6.4e-06    0.0097     529     588 ..      69     132 ..      65     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.4e-06
   PF10174.4 529 kh.ekLekelkr..lrln.aesasrgsaveaetsesradsagarnEvdrLldrlekalqerdat 588
                 ++ +kL++e +r  +rl+ +++++r +a+++e + +++d+++a +E+ rL+  le+  +e+   
  MMETSP0890-20130614|4882_1  69 ECrKKLLRERNRihARLSrQRKRQRLEALQEENTTLQRDCKKAHEEILRLRGLLEECDNENSRL 132
                 44268999999977676526678999*******************************9998765 PP

>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   3.5   1.6e-05     0.025     244     326 ..      48     132 ..      31     164 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   PF07767.6 244 eddeeeeesedesekegfdseke..lsinkpvknkrKtkaqRnkekrrkelekeakeekelkkkeeqlarlkeikkevaekeker 326
                 ++++++ +   e+ +   +++++  +   ++++   + ++qR++++ +  +e+++  +++ kk +e++ rl+ + +e ++++  +
  MMETSP0890-20130614|4882_1  48 RESNDDISPVSEDGNGSIEDDECrkKLLRERNRIHARLSRQRKRQRLEALQEENTTLQRDCKKAHEEILRLRGLLEECDNENSRL 132
                 34444444444444344455555434555555588888889999999999999999**********************9987665 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   1.7e+03      23      39 ..      73      89 ..      71      94 .. 0.78
   2 ?   10.8   1.0   0.00018      0.28      14      44 ..      94     124 ..      91     125 .. 0.90
   3 ?   -1.7   0.0       1.4   2.2e+03      26      35 ..     127     136 ..     126     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
  PF02183.13 23 sLqkEkekLraevlsLk 39
                +L++E ++ +a + +++
  MMETSP0890-20130614|4882_1 73 KLLRERNRIHARLSRQR 89
                78899998888887766 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00018
  PF02183.13  14 ydaLkaendsLqkEkekLraevlsLkeklqe 44 
                  +aL++en  Lq++ +k + e+l+L++ l+e
  MMETSP0890-20130614|4882_1  94 LEALQEENTTLQRDCKKAHEEILRLRGLLEE 124
                 699***********************98876 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.4
  PF02183.13  26 kEkekLraev 35 
                 +E+++Lra v
  MMETSP0890-20130614|4882_1 127 NENSRLRAWV 136
                 6899999855 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.7   0.00025      0.39      54     126 ..      71     138 ..      64     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00025
   PF11559.3  54 resleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklknekeelqrlkniiqs 126
                 r++l ++ +++ a ++r     +r  ++le+l+ e+++lq++++++  ++ +l   l +   e++rl+ +++ 
  MMETSP0890-20130614|4882_1  71 RKKLLRERNRIHARLSR-----QRKRQRLEALQEENTTLQRDCKKAHEEILRLRGLLEECDNENSRLRAWVDG 138
                 44444444555554444.....4455889999***************************9******9999975 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.6   0.00026       0.4     118     182 ..      87     141 ..      66     155 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00026
   PF04156.9 118 lellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqekla 182
                 ++ +++ l++l+e++ +l++++k++ +ei +lr            l+++  ++++++++++  ++
  MMETSP0890-20130614|4882_1  87 RQRKRQRLEALQEENTTLQRDCKKAHEEILRLR----------GLLEECDNENSRLRAWVDGVMQ 141
                 345557789999999999999999999999999..........4444444444455555555555 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.78   1.2e+03      48      57 ..      81      90 ..      49     103 .. 0.50
   2 ?    9.5   2.6    0.0007       1.1       6      70 ..      97     161 ..      72     174 .] 0.81

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.78
   PF06156.8 48 lrerleelee 57
                ++ rl+++++
  MMETSP0890-20130614|4882_1 81 IHARLSRQRK 90
                2222222222 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0007
   PF06156.8   6 lfdklseleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkkkk 70 
                 l ++ ++l+++ ++ +ee+ +l+  l+e  +en++l+  ++ + +   +l++++++++k++ + k
  MMETSP0890-20130614|4882_1  97 LQEENTTLQRDCKKAHEEILRLRGLLEECDNENSRLRAWVDGVMQTEPSLSNKNSSEKKNEMSAK 161
                 6677788999999999*********************9999998877777765555555554444 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.3     2e+03      48      63 ..      71      86 ..      59      89 .. 0.79
   2 ?    4.7   6.2     0.021        32      25      64 ..      92     134 ..      73     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.3
                HHHHHHHH---TTHHH CS
   PF06005.7 48 nkklkeereawqerlr 63
                 kkl +er+ +  rl+
  MMETSP0890-20130614|4882_1 71 RKKLLRERNRIHARLS 86
                4788888888888875 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHH---TTHHHH CS
   PF06005.7  25 meieeLkeeneqlkeeneeLeeenkklk...eereawqerlra 64 
                 +++e L+een++l++  ++  ee+ +l+   ee ++ ++rlra
  MMETSP0890-20130614|4882_1  92 QRLEALQEENTTLQRDCKKAHEEILRLRgllEECDNENSRLRA 134
                 6788888888888888888888888888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       952  (0.0696314); expected 273.4 (0.02)
Passed bias filter:                      560  (0.0409596); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.89
# Mc/sec: 468.50
//
Query:       MMETSP0890-20130614|4890_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   25.1   0.7    4.1e-05   23.7   0.0    2.0  2  PF06337.7 DUSP domain
  ------ inclusion threshold ------
       0.25   10.8   4.4        7.6    6.0   0.0    2.8  3  PF07960.6 CBP4


Domain annotation for each model (and alignments):
>> PF06337.7  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     6e-09   4.1e-05       2      94 ..      70     157 ..      69     159 .. 0.82
   2 ?   -2.3   0.1      0.82   5.6e+03      35      35 ..     197     197 ..     177     226 .. 0.45

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 6e-09
   PF06337.7   2 qkwyliskkWleqwkdyvkydekeedsekssaqkpGpIdnssLveteeekakstl.lengrlkpqlqegkd.yelvpeevweaLyewY.gggpeip 94 
                 ++w +++  Wl++w  +v y+++ +         pGp+ n++L+  ++e +   +       k+ ++e +  y ++  ++w+ +++ Y g+gpei+
  MMETSP0890-20130614|4890_1  70 EEWRVLHAGWLHHWLAFVHYNKQRN--------APGPVRNEDLLYLDDEHNWRGKpKLIFAGKEAISEARGhYRYIRPSTWKIICQLYpGSGPEIE 157
                 57889999*************9987........6*********99998766444454444455577777767****************66999985 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.82
   PF06337.7  35 k 35 
                 +
  MMETSP0890-20130614|4890_1 197 R 197
                 2 PP

>> PF07960.6  CBP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.3    0.0042        28      77     108 ..      34      64 ..       8      76 .. 0.64
   2 ?    6.0   0.0    0.0011       7.6       3      42 ..     111     150 ..     109     158 .. 0.91
   3 ?   -1.4   0.0      0.22   1.5e+03      74      81 ..     187     194 ..     163     226 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0042
   PF07960.6  77 WktgkiesPlekkrevekfekekaeeaqkeel 108
                    ++i++ +e++++++k++kek++e++ ee+
  MMETSP0890-20130614|4890_1  34 FEKAPIDA-FETDESLKKKRKEKKKEKKDEEE 64 
                 55677787.88886676655555333333322 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0011
   PF07960.6   3 plwvrwlkvllaGvviivgGvllvkyitPtdeeLiarlnP 42 
                  +w+   k+++aG   i  +   ++yi+P+  ++i +l P
  MMETSP0890-20130614|4890_1 111 HNWRGKPKLIFAGKEAISEARGHYRYIRPSTWKIICQLYP 150
                 5788999***********************9999998877 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.22
   PF07960.6  74 kpiWktgk 81 
                 +pi +  +
  MMETSP0890-20130614|4890_1 187 TPIQQQNE 194
                 23322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1012  (0.0740199); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 691.61
//
Query:       MMETSP0890-20130614|4887_1  [L=1580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   16.2   0.0       0.06   12.9   0.0    2.3  2  PF00589.17 Phage integrase family
  ------ inclusion threshold ------
      0.095   12.9   0.0       0.18   12.0   0.0    1.4  1  PF00075.19 RNase H


Domain annotation for each model (and alignments):
>> PF00589.17  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.07   4.8e+02      24      43 ..    1335    1353 ..    1324    1378 .. 0.81
   2 !   12.9   0.0   8.7e-06      0.06     124     170 ..    1479    1527 ..    1441    1530 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.07
                  HHH---HHHH---HHHHHT- CS
  PF00589.17   24 rllvellleTglRisEllsl 43  
                  r+ + ++l+Tg R +E+ sl
  MMETSP0890-20130614|4887_1 1335 RACLLTMLSTGFRKNEI-SL 1353
                  678999**********7.44 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 8.7e-06
                  --..SS----TTT---HHHHHH----HHHHHH-----SSHHHHHHCTTS CS
  PF00589.17  124 ie..keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthva 170 
                  +e   + + H++R  +a all++G +l  +q ll + s ++   Y++++
  MMETSP0890-20130614|4887_1 1479 REhaSKYSLHSFRIGLACALLKAGRPLPLIQALLRWMSPESLVPYARLD 1527
                  33345899*********************************99999876 PP

>> PF00075.19  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05      0.18       5     115 ..     839     954 ..     835     962 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.6e-05
                 EEEE----BT----SBXXXXB..XXX.XXXXXXXXX-HHHHHHHHHHHHHHC.CTHH...TTBCEEES-CCHHHHHHSTT-----.B-----B-TTHHHHHHCSSSEEEEEE--XXXX CS
  PF00075.19   5 vvYtDGSclknskegragyvv..erg.knfskplpeqtnqraEllAliealk.alsq...ekvniytDSkyvvksilkelerkkeplkseskpikneiaellakkekvqlkhvkghkg 115
                  vYtD++ +++ +++ agyv+  + +    s++l+     + E++++  a+   +++    ++ i++DS+  v  + +  +  ++ +   + ++ ++    + ++  +++ h+ g ++
  MMETSP0890-20130614|4887_1 839 HVYTDAAKSGTGSPAIAGYVAglYWAlPLSSEALQMFDIPVLEMVGVVIAVYiIAERypgISISIWSDSETSVTVMHNKANA-ACMKWLHQ-ELLQSKFYSICSSAGLYVGHISGSAN 954
                 59*****9999999999996633333247777888999999*********99543334446777******999955552222.22222222.34443333335567799999999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.02u 0.42s 00:00:02.44 Elapsed: 00:00:01.27
# Mc/sec: 2981.29
//
Query:       MMETSP0890-20130614|4894_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-28   96.4   8.3    6.3e-11   41.6   0.2    3.0  3  PF00400.27 WD domain, G-beta repeat
      1e-05   23.8   1.2      0.029   12.4   0.1    2.0  2  PF11715.3  Nucleoporin Nup120/160
     0.0081   15.6   0.2       0.44   10.1   0.0    2.9  3  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.013   14.8   0.3       0.02   14.2   0.2    1.4  1  PF13360.1  PQQ-like domain
      0.046   13.1   0.3        0.3   10.5   0.1    2.0  2  PF08972.6  Domain of unknown function (DUF1902)
       0.11   11.7   0.0       0.17   11.1   0.0    1.4  1  PF04478.7  Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   1.2e-10   2.8e-07      16      39 .]       6      29 ..       4      29 .. 0.98
   2 !   41.6   0.2   2.8e-14   6.3e-11       3      39 .]      35      71 ..      33      71 .. 0.95
   3 !   29.3   0.1   2.1e-10   4.7e-07       2      31 ..      76     105 ..      75     105 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.2e-10
                EEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 16 cvafspdgpllasgSrDgtirlWd 39
                c++fs dg +++++SrD+t ++Wd
  MMETSP0890-20130614|4894_1  6 CCKFSKDGGRVVTASRDRTAKIWD 29
                9**********************9 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 2.8e-14
                EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ++ tl+gHt+ V +++fs dg+++++ S+Dgt r+W+
  MMETSP0890-20130614|4894_1 35 LLLTLSGHTHYVLACDFSTDGSRVITTSYDGTARVWN 71
                6889********************************7 PP

  == domain 3    score: 29.3 bits;  conditional E-value: 2.1e-10
                 EEEEEEESSSSSEEEEEEESSSTEEEEEET CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSr 31 
                 +++ +l+gHts+V+ +afs dg++++++S+
  MMETSP0890-20130614|4894_1  76 TLLLVLEGHTSSVWGCAFSADGKRIVTASA 105
                 6789************************96 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.3e-05     0.029     233     256 ..      15      38 ..       2      55 .. 0.80
   2 !   11.4   0.0   2.5e-05     0.057     225     255 ..      53      79 ..      40     104 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
   PF11715.3 233 fvftlsrDgkLRvWnletgqclrt 256
                  v+t srD++ ++W++ tg +l t
  MMETSP0890-20130614|4894_1  15 RVVTASRDRTAKIWDTLTGRLLLT 38 
                 588****************99555 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.5e-05
   PF11715.3 225 ssevegqtfvftlsrDgkLRvWnletgqclr 255
                 +   +g+ + +t s Dg+ RvWn e+g++l 
  MMETSP0890-20130614|4894_1  53 T---DGSRV-ITTSYDGTARVWNAENGTLLL 79 
                 4...45555.599***************943 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.25   5.7e+02      16      24 ..       9      17 ..       6      23 .. 0.82
   2 ?    1.4   0.0      0.11   2.4e+02      15      27 ..      50      62 ..      47      70 .. 0.76
   3 !   10.1   0.0    0.0002      0.44      12      24 ..      89     101 ..      84     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.25
                E-----EEE CS
   PF07676.7 16 wSPDGkkiv 24
                +S+DG + v
  MMETSP0890-20130614|4894_1  9 FSKDGGRVV 17
                99**98876 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.11
                EE-----EEEEEE CS
   PF07676.7 15 awSPDGkkivFtS 27
                 +S DG++ + tS
  MMETSP0890-20130614|4894_1 50 DFSTDGSRVITTS 62
                5999999987555 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0002
                 EEEEE-----EEE CS
   PF07676.7  12 gePawSPDGkkiv 24 
                 ++ a+S DGk+iv
  MMETSP0890-20130614|4894_1  89 WGCAFSADGKRIV 101
                 5789********8 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   8.9e-06      0.02      35      99 ..      12      78 ..       7     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.9e-06
   PF13360.1 35 dggtlfvasakgrlvaldaatGkvlWsksl.egeiega...p.lvaggrvvvvtadnslvaldaetGkll 99
                dgg++++as++++   +d+ tG++l + s  +             +g rv+ ++ d++ +  +ae+G+ll
  MMETSP0890-20130614|4894_1 12 DGGRVVTASRDRTAKIWDTLTGRLLLTLSGhTHY---VlacDfSTDGSRVITTSYDGTARVWNAENGTLL 78
                89************************99963333...33455599999999999*************985 PP

>> PF08972.6  Domain of unknown function (DUF1902)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.22   4.9e+02       3      14 ..      17      28 ..      16      32 .. 0.89
   2 ?   10.5   0.1   0.00013       0.3       3      30 ..      59      85 ..      58      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.22
                EEEEE------E CS
   PF08972.6  3 iqavwDeEAgVW 14
                + a +D  A +W
  MMETSP0890-20130614|4894_1 17 VTASRDRTAKIW 28
                78999******9 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00013
                EEEEE------EEEE-SS------EESS CS
   PF08972.6  3 iqavwDeEAgVWvAesddipGLvtEAdT 30
                i   +D  A VW Ae   +  Lv+E  T
  MMETSP0890-20130614|4894_1 59 ITTSYDGTARVWNAENGTLL-LVLEGHT 85
                6778****************.***9988 PP

>> PF04478.7  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.4e-05      0.17      83     111 ..       9      36 ..       5      74 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.4e-05
   PF04478.7  83 fidsdGkvvtayrsnklskwWkallGkki 111
                 f +  G+vvta  +++ +k+W +l G+ +
  MMETSP0890-20130614|4894_1   9 FSKDGGRVVTAS-RDRTAKIWDTLTGRLL 36 
                 566779*****6.5799*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 403.20
//
Query:       MMETSP0890-20130614|4893_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-49  165.8   0.0    6.5e-48  162.2   0.0    2.1  1  PF01300.13 Telomere recombination
    1.2e-11   44.6   0.0      3e-11   43.3   0.0    1.7  2  PF03481.8  Putative GTP-binding controlling metal-binding


Domain annotation for each model (and alignments):
>> PF01300.13  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.0   9.6e-52   6.5e-48       2     160 ..      34     193 ..      33     230 .. 0.93

  Alignments for each domain:
  == domain 1    score: 162.2 bits;  conditional E-value: 9.6e-52
  PF01300.13   2 alkkGkivaiptetvYgLacdatneeaverlreiKqrpkdkplavlvssledleklae.seveeealk.laerfwPgpitlllkaskeklpklvapglktvGvrlPdhplarlLlealgeplvaTSanlsgepsltdaeeveeelgekvdlildggeiavg 160
                 +l +G++va+ptetvYgL+++a ne+av r++e K+rp + pl+v+v+s e++ kl++ +ev +++++ l++ fwPgp+tl+  a+ e lp+ +++g+kt+Gvr+P+hplar+Ll+ +  p++a+Sanl g+ s+t+a++v ++lg+   +ildg+ i++ 
  MMETSP0890-20130614|4893_1  34 VLASGGLVAFPTETVYGLGANALNEAAVLRIFETKGRPLTDPLIVHVASKEAALKLVQlNEVAQRVFErLTDVFWPGPLTLIASARPE-LPDCLSAGTKTLGVRCPSHPLARKLLQVAAIPVAAPSANLFGHVSPTTARHVLDDLGHTDIFILDGESIPHD 193
                 7999*******************************************************99988877648999***********8665.*****************************99***************************99999999877764 PP

>> PF03481.8  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.75   5.1e+03      72      86 ..      90     104 ..      56     106 .. 0.70
   2 !   43.3   0.0   4.4e-15     3e-11      20     118 .]     271     387 ..     236     387 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.75
   PF03481.8  72 kdleeaaanLFaaLr 86 
                  +l+e+a++ F+ L 
  MMETSP0890-20130614|4893_1  90 VQLNEVAQRVFERLT 104
                 357888888888876 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 4.4e-15
   PF03481.8  20 eeapk.aPGmkykHYaPkakvvlve......aiaklle...........gkkvgllaseslkvvlslgsrkdleeaaanLFaaLrelDee..vdlIlvegvpe....eglglAimnRLrkAag 118
                  ++p+ +PG++ +HYaP+ + vl +      +     +           + +++ l+++ + + +++ s++d+ +aaa LF++Lr +++   ++ +l+  +++    ++l +++ +RL +Aa+
  MMETSP0890-20130614|4893_1 271 IQTPRvSPGQLLSHYAPRLPAVLTRlandgiS-----QidlsaavivdfNCRLAPLKTK-VLAYRDIASDGDAVKAAACLFSTLRWAENVpgAERVLIADLSSlrtgTDLLAGVADRLYRAAS 387
                 346777*****************975444330.....2333233333344444444442.234448899********************99769999987664233367789*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.64
# Mc/sec: 1486.49
//
Query:       MMETSP0890-20130614|4899_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.4  11.1       0.02   14.8   7.7    1.4  1  PF00892.15 EamA-like transporter family
      0.025   14.8   5.0      0.066   13.4   2.9    1.9  2  PF00428.14 60s Acidic ribosomal protein
      0.038   13.4   0.0      0.055   12.9   0.0    1.2  1  PF06591.6  T4-like phage nuclear disruption protein (Ndd)


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   7.7   4.3e-06      0.02      11     121 ..      28     138 ..      11     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.3e-06
  PF00892.15  11 kklles.vspltitayrlliagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGv 121
                 k ++ + ++++++ta+  +i+g  l l+l +  ++ ++++ k+++ +  +  ++++ +++   +a ++++a  ++l+++le ++  l+ +l ++e + +++++g ++ l+++
  MMETSP0890-20130614|4899_1  28 KFMTGNsINAIAATAIANIIGG-GLCLALGCATGSHIFPKSKFFFLISCFDGIAITAAICGNSFAPRYLTAPHIGLLSLLETILGPLWVYLRFREVPFITTFIGGAILLIAI 138
                 55555569**************.455555555554467777776666677789999999***********************************************999987 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.27   1.2e+03      26      44 ..      26      44 ..      12      61 .. 0.76
   2 ?   13.4   2.9   1.4e-05     0.066      27      77 ..     156     207 ..     148     209 .] 0.57

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.27
  PF00428.14 26 lvkalegkdikeliangsa 44
                 +k+++g +i+++ a++ a
  MMETSP0890-20130614|4899_1 26 RYKFMTGNSINAIAATAIA 44
                5889999999988887755 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.4e-05
  PF00428.14  27 vkalegkdikeliangsakla.aaaaaaaaaaaaaaaaaaaeeekkeeeeeE 77 
                 v+  ++ +i ++  + +++l+ ++++ aaaaaaaa++++  ++   ee + E
  MMETSP0890-20130614|4899_1 156 VTYDDDGNIPKAAVETATSLSsPSSSFAAAAAAAAEKEQVPAAVDMEEDKIE 207
                 5666677777776666667777454555555555555555555555555433 PP

>> PF06591.6  T4-like phage nuclear disruption protein (Ndd)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05     0.055       2      55 ..      28      84 ..      27      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-05
   PF06591.6  2 kyltvkdllavgaevvavvkngeyf..lgse.skeilskegfyflvskldgrqfsnp 55
                k++t + ++a+ a+ +a + +g     lg+    +i  k  f+fl+s  dg  ++ +
  MMETSP0890-20130614|4899_1 28 KFMTGNSINAIAATAIANIIGGGLClaLGCAtGSHIFPKSKFFFLISCFDGIAITAA 84
                99***************999998752267776889***************9886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.63
# Mc/sec: 794.98
//
Query:       MMETSP0890-20130614|4900_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0054   15.6   1.0      0.023   13.6   0.5    2.2  2  PF01544.13 CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.019   14.4   0.0       0.05   13.1   0.0    1.7  1  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.53   3.6e+03      74     111 ..      63      99 ..      51     103 .. 0.72
   2 !   13.6   0.5   3.3e-06     0.023     194     283 ..     260     355 ..     131     360 .. 0.59

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.53
  PF01544.13  74 llgdnflitvrkeplealdeiikrlekegekpkspgel 111
                 ++g +  i++  e l+++++i++r+ +++  ++s++++
  MMETSP0890-20130614|4900_1  63 IIGARSAIFFDAE-LPSTRRIVRRIAESDICTPSSSSF 99 
                 5555555666555.889999999999777777777666 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.3e-06
  PF01544.13 194 lrdlldelerllemaealrerlrslqdtylsllsnrlNrimkv...LTvvtaiflPltlitGiyGMNfk.glPelewpy..gyafvillglmilla 283
                 l+  + +l+++   ++ l+ +l+  +d+    ++ r N+i+++   L+  +  +   t  t+i+GMN k gl e++  +    +f  +lgl+i+++
  MMETSP0890-20130614|4900_1 260 LESYHRRLAHVGAILNDLKAQLTASRDLAKVAIDVRRNNIIRFnlyLSTSSLGLAVTTCATSIFGMNLKsGLEESDGLFlpVSLFSGILGLAIAIF 355
                 44444455557777778888888888888888888888888854449999999988899**********557766666633344444444444443 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.3e-06      0.05       3      42 ..     457     496 ..     456     497 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.3e-06
   PF13833.1   3 GlItreeLkral.allglkglseeevdilfrefDtdgdGki 42 
                 + + r++L+  l a+ g + +s+ ++d +f+ fD  + Gki
  MMETSP0890-20130614|4900_1 457 HFLNRQDLSTLLlATNGRS-PSKPDLDLIFDIFDPQCTGKI 496
                 56789************99.********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       922  (0.0674371); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.45s 00:00:01.44 Elapsed: 00:00:01.18
# Mc/sec: 1078.36
//
Query:       MMETSP0890-20130614|4910_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   56.3   1.3    4.6e-09   35.7   0.0    2.0  2  PF00400.27 WD domain, G-beta repeat
     0.0022   17.4   0.2        0.7    9.5   0.0    2.5  2  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
       0.11   10.5   0.1        0.1   10.6   0.1    1.0  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   7.2e-08   0.00033      18      39 .]       1      22 [.       1      22 [. 0.97
   2 !   35.7   0.0     1e-12   4.6e-09       1      30 [.      26      55 .]      26      55 .] 0.95

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 7.2e-08
                EEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 18 afspdgpllasgSrDgtirlWd 39
                +fs dg+++++ S+D++ ++Wd
  MMETSP0890-20130614|4910_1  1 KFSKDGRRVVTTSSDNKAKIWD 22
                69*******************9 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1e-12
                TEEEEEEESSSSSEEEEEEESSSTEEEEEE CS
  PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgS 30
                g+++ tlrgHt++V+++afspdg++++++S
  MMETSP0890-20130614|4910_1 26 GTLLLTLRGHTGWVNACAFSPDGTRVITAS 55
                57889************************8 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0024        11      16      27 ..       2      13 ..       1      21 [. 0.71
   2 !    9.5   0.0   0.00015       0.7      13      23 ..      41      51 ..      35      52 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0024
                E-----EEEEEE CS
   PF07676.7 16 wSPDGkkivFtS 27
                +S+DG++ v tS
  MMETSP0890-20130614|4910_1  2 FSKDGRRVVTTS 13
                788888877555 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00015
                EEEE-----EE CS
   PF07676.7 13 ePawSPDGkki 23
                + a+SPDG++ 
  MMETSP0890-20130614|4910_1 41 ACAFSPDGTRV 51
                679*****996 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.2e-05       0.1     234     257 ..       9      32 ..       3      54 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
   PF11715.3 234 vftlsrDgkLRvWnletgqclrtt 257
                 v+t s D+k ++W+  tg++l t 
  MMETSP0890-20130614|4910_1   9 VVTTSSDNKAKIWDAVTGTLLLTL 32 
                 4599***************95554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.97
# Mc/sec: 135.88
//
Query:       MMETSP0890-20130614|4909_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-44  150.6   0.0    6.2e-44  150.0   0.0    1.2  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   4.5e-48   6.2e-44      12     229 .]      64     290 ..      48     290 .. 0.91

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 4.5e-48
                 .TT---HHHHHHHHHHTT-......--TTTTGGGSTTGGG-------HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-----.--EE----------......--...........HHHHHHHHH----HHHHHHH---TT-----TT......................T--...-..-------THHHHHHHH.........................--EE-HHHHHHHHSHHHHHHHHHHHH- CS
  PF00141.18  12 drdmgpsllrlafhdcfvy......gGcdgsvlllapektapaNaslrkgldvldaikakleaacpgtvScADlialaardavelaggplvpvslGRrDatessasev.snlP.....dpkasadelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle.........................krgllrsDlallsdsetralvekyars 229
                   ++gp l+rla+h++++y      gG dg+ +  +pe +++aNa+l++g+++++++ ++ +      +S AD ++l++ +a++++ggp + +++GR Da++ s+s     lP     + +++a++lrd f r+g++d+++vaLsGaH++G++h +              ++y g           + ++t+f+n+yf+ l++                         + ++l+sD+all d+++ra++e+ya++
  MMETSP0890-20130614|4909_1  64 GTSIGPTLVRLAWHSAGTYakadnsGGSDGGKMKYDPEASWGANAGLAEGRKLMEQVATETK------LSRADAYTLGGVVAISEMGGPEISWRPGRSDAKDGSKSPPdGRLPnadmgSLRKTANHLRDIFYRMGFSDRDIVALSGAHVLGRCHQN-------------ASGYDG---------PWVYSETTFSNEYFRLLFDgtwtiktthkgepwtgpdqfesadgELMMLPSDMALLWDKSFRAVAEEYAKD 290
                 57899*****************************************************9987......8********************77**************99989999999977799********************************43.............112221.........122277**************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:01.03
# Mc/sec: 772.42
//
Query:       MMETSP0890-20130614|4911_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   60.3   0.0    2.8e-16   59.5   0.0    1.4  1  PF00535.21 Glycosyl transferase family 2
    1.5e-12   47.7   0.0    4.2e-12   46.2   0.0    1.7  1  PF13641.1  Glycosyltransferase like family 2
    0.00015   20.8   0.0    0.00029   19.8   0.0    1.6  1  PF10111.4  Glycosyltransferase like family 2
    0.00081   18.6   0.0     0.0023   17.2   0.0    1.7  2  PF13506.1  Glycosyl transferase family 21
     0.0017   17.9   0.1      0.018   14.6   0.0    2.3  2  PF13632.1  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0     1e-19   2.8e-16       1     113 [.       9     119 ..       9     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1e-19
                 EEEEEESS-.TTTHHHHHHHHHT-.S---EEEEEEE-S--HHHHHHHGGGGGE------HHHHHS-HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHHHHHHHH.-T..T-- CS
  PF00535.21   1 sviiptyNe.ekylletlesllnq.typnfeiivvDDgStDetveileeyaksdprvrvirleknvGkagarnaglkkatgdyilflDaDdepdpdwleklveklekdgadvvig 113
                 svi+pt    +++l+++l+s+l+q    ++e+iv+ Dg     + i+++ +      r++  + +   +  rn+g+++a+ d+i+flD+Dd++ p++le++ e le d +++++ 
  MMETSP0890-20130614|4911_1   9 SVIVPTRGSkPALLKRSLDSVLQQkRFTEIEVIVIIDGDCVIPEGIINSRCR---VARLLPAS-GGRSGLVRNEGIRLAQYDWIAFLDDDDAWFPNKLEQQFELLEIDATQMICS 119
                 8**************************************8888999999974...66666666.54778889********************************99877777765 PP

>> PF13641.1  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.6e-15   4.2e-12       3     217 ..       8     211 ..       5     229 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.6e-15
   PF13641.1   3 vavvvptlnedd.vlarvlesilaldyaprlevivvvdgsdaetldvaeelaaaypdvrvrvvvrprnpgptgkaralnealqaiksdlvlllDaDsvvdpdtlrrllpfflskgvglvqgpvlvlarrsllsalqalefaerhlrfmalrralgvaplaGsgllirrsvleelggfdpgfilteDyelglrlrragyrtayvpgalvyee.spssl 217
                 ++v+vpt+++ +  l r+l+s+l +++   +eviv+ dg+ + + + +  + +++  +  r++  p  +g++g +r  ne+++ ++ d++++lD+D+ + p+ l++   +++ +  +++++  l  ++  l ++    e+ + +    ++++ ++++ +  s +++r+++l+elggf+     + D++l+l +  + + + y p++lv    sp++l
  MMETSP0890-20130614|4911_1   8 CSVIVPTRGSKPaLLKRSLDSVLQQKRFTEIEVIVIIDGD-CVIPEGI--INSRCRVA--RLL--PASGGRSGLVR--NEGIRLAQYDWIAFLDDDDAWFPNKLEQQFELLEIDATQMICSAALEVPGLEL-PV--IEETSLKKGLVFTRDQIAQRNLIVCSSVVVRTQLLRELGGFGD-LKYASDWKLWLACLDHIGTCSYIPQPLVFVNaSPTDL 211
                 89*********966777********88899*******555.6566655..33333333..455..44469989999..****************************9999955555555555555555554.22..223444444334444445677777799****************.9999**********************98776566555 PP

>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   0.00029       1     117 [.       9     115 ..       9     173 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-07
   PF10111.4   1 svIiPvrlseekrdilerlqsilarlkefrsdeeveilvvdndssesfakelkkiiakngaikyishktekdlfspakaRNrgaeksesdvilflDvDllisedllekiik..kvkels 117
                 svI+P r s+ +   +  l s+l++   +    e+e++v+ +++    +     ii+++  +  +  ++       + +RN+g+ +++ d i+flD D ++ +++le++ +  ++ + +
  MMETSP0890-20130614|4911_1   9 SVIVPTRGSK-PALLKRSLDSVLQQKRFT----EIEVIVIIDGDCVIPE----GIINSRCRVARLLPASGG---RSGLVRNEGIRLAQYDWIAFLDDDDAWFPNKLEQQFEllEIDATQ 115
                 7899998888.556666777777777774....6666555444444433....444444444333333333...4799******************************99944444444 PP

>> PF13506.1  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   3.1e+03      29      46 ..      36      53 ..      21      57 .. 0.77
   2 !   17.2   0.0   8.3e-07    0.0023      25     123 ..      79     177 ..      75     179 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.1
   PF13506.1 29 akydllvisDsdvlvdpd 46
                 + +++vi D d ++++ 
  MMETSP0890-20130614|4911_1 36 TEIEVIVIIDGDCVIPEG 53
                566899999999998875 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 8.3e-07
   PF13506.1  25 aleaakydllvisDsdvlvdpdyLeellaaledpkvglVtalpvgadekglaaaleaaflntlagvlaalkgagfavGksmalrreaLeaiggfealkd 123
                 +++ a+yd++ ++D+d +  p++Le+  + le  +++++++  + ++   l    e  +   l  +  + ++ + +v +s ++r++ L+++ggf  lk+
  MMETSP0890-20130614|4911_1  79 GIRLAQYDWIAFLDDDDAWFPNKLEQQFELLEIDATQMICSAALEVPGLELPVIEETSLKKGLVFTRDQIAQRNLIVCSSVVVRTQLLRELGGFGDLKY 177
                 56669*******************************************9999966666667777777779999*********************99986 PP

>> PF13632.1  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12   3.2e+02       1      14 [.      40      53 ..      40      60 .. 0.89
   2 !   14.6   0.0   6.7e-06     0.018      62     130 ..     144     213 ..      87     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.12
   PF13632.1  1 iilllDaDtvlppd 14
                +i+++D+D v+p++
  MMETSP0890-20130614|4911_1 40 VIVIIDGDCVIPEG 53
                69*********986 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 6.7e-06
   PF13632.1  62 vrealgrvlpsvGsgavlrrsalqevggwdessvsEDfdmalrlqraGyrvrfvpeaavrek.spptfrd 130
                  r+++ +   +v s +v+r++ l+e+gg+ +   + D+ ++l ++ +  ++ ++p+++v    sp++++ 
  MMETSP0890-20130614|4911_1 144 TRDQIAQRNLIVCSSVVVRTQLLRELGGFGDLKYASDWKLWLACLDHIGTCSYIPQPLVFVNaSPTDLDR 213
                 4555556666788899*****************************************7776625555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.90
# Mc/sec: 734.88
//
Query:       MMETSP0890-20130614|4918_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 218.62
//
Query:       MMETSP0890-20130614|4914_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-33  113.8   0.1    3.2e-19   68.3   0.0    3.1  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.15   11.4   2.0       0.29   10.5   1.4    1.4  1  PF11044.3  Plectrovirus spv1-c74 ORF 12 transmembrane protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   4.7e-23   3.2e-19       6      92 ..      27     110 ..      25     113 .. 0.94
   2 !   26.4   0.0   5.2e-10   3.6e-06       4      88 ..     117     197 ..     114     203 .. 0.91
   3 !   15.5   0.0   1.3e-06    0.0092       9      92 ..     226     302 ..     219     305 .. 0.94

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 4.7e-23
                 HHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHH.HHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgilda.lkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 +++++aG++++ai++  ttP+dvvKtr+q    ++++ y+g + + +++i+  eGi+ l +Gl+p+++++ ++ aikf++ye +k ++
  MMETSP0890-20130614|4914_1  27 WRYFAAGGLSAAISHGYTTPVDVVKTRMQ----TNPEMYNGSVPIaVQRIIADEGILFLLQGLGPTCVGYGLEGAIKFGFYELCKPIF 110
                 7899*************************....9999999988864899***********************************9887 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 5.2e-10
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetl 88 
                  +++ lla+ +Aga+a++v +P + +++rl      ++    ++l  l +i ke+G+ + +  l + + +++p+++ k v+++++
  MMETSP0890-20130614|4914_1 117 DLFNLLLASTVAGALASIVLCPAEDIRIRLV----ANPDYAPSALAGLARISKEDGPFSSFGSLPAMVSKQIPYTMGKQVSFDFF 197
                 567889*************************....677777999999*****************************999999876 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 1.3e-06
                 HH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   9 llaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 ++a++ +++ia ++ +P d+v tr      +++ +  g+l+ ++ ++ e     l+ G+ ++ll v+    i++v+y+++k++l
  MMETSP0890-20130614|4914_1 226 VMAALPSAVIACVLSHPGDTVLTRYF----KNGVHPEGVLGSFSDLIAE---NRLFIGIKARLLHVIGILWIQLVIYDKIKQFL 302
                 6789999*******************....99999**************...69***************************998 PP

>> PF11044.3  Plectrovirus spv1-c74 ORF 12 transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   4.3e-05      0.29      17      34 ..     287     303 ..     281     304 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.3e-05
   PF11044.3  17 vflyiGLliYqKirqirG 34 
                 + l+i L iY Ki+q  G
  MMETSP0890-20130614|4914_1 287 I-LWIQLVIYDKIKQFLG 303
                 4.7************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 822.75
//
Query:       MMETSP0890-20130614|4919_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-99  332.3   0.0    1.8e-99  332.1   0.0    1.0  1  PF00676.15 Dehydrogenase E1 component
  ------ inclusion threshold ------
       0.14   10.9   0.2       0.24   10.1   0.0    1.5  2  PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.1   0.0  2.6e-103   1.8e-99       3     298 ..      46     344 ..      44     346 .. 0.96

  Alignments for each domain:
  == domain 1    score: 332.1 bits;  conditional E-value: 2.6e-103
                 HHHHHHHHHHHHHHHHHTTSSS--------HHHHHHHHHCS-TTSEEE--SS-HHHHHHTT--HHHHHHHHHT-T....T-TT----TT---BTT--B----S--SHHTTHHH--HHHHHH-....-----EEEEE----TTSHHHHHHHHHHHHCT--EEEEEEE-SEETTECGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EEEEEE-------STT--GGGTS-CHHHHHHHHCC-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHTS---- CS
  PF00676.15   3 lmllrrmedalaalykrkkrigfvhlsagqealqvgiaaalekeDlvistYRehgvllargvsleevlaeltgke....kgkggsmheisyaekksrflggngivgaqvplvaGialaakye....gkkevailliGDGatnqGqffealnlAalwklpvifvveNNqyaisteaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvLielvtYRyggHsesDdpstyrtreeveevrkkkdpikrlkehlvkkgvvseeelkeiekevrkeieeavkkaeekkepe 298
                 + ++rrme  ++++yk+ +++gf+hl++gqea+ +gi+  l  eD  i++YR+h++ larg ++e++lael+gk+     gkggsmh ++  +kk++f+gg+givgaqvp++aG+a+a ky+    +   vai+ +GDGa+nqGq++e+ n+Aalwklp++f +eNNqy+++t+ +rss+ +e+++   g  ipg+++dG+ vl v++ vk+A+++a +g+gP+ +e+ tYRy+gHs+sD+++tyr+r+e+++vr+++dpi+ +k+++++   v+++elk+iek +r+e+ +a ++a++++ p+
  MMETSP0890-20130614|4919_1  46 MYTMRRMEITCDNEYKARNIRGFCHLYDGQEAIGMGIHSGLSLEDSWITSYRCHCIKLARGGTVESILAELMGKAtgatGGKGGSMH-FY--SKKNNFFGGQGIVGAQVPVGAGLAFANKYKtppgQPMPVAIACYGDGAANQGQIWESANMAALWKLPMLFGIENNQYGMGTSISRSSSNNEYYT--MGNMIPGLKIDGMNVLSVREGVKFAKNFAATGNGPMYLEFSTYRYHGHSMSDPGTTYRNRDEISNVRATRDPIEHIKKLILDYTAVKDDELKAIEKDIRAEVAAACDRAKSAQPPP 344
                 789************************************************************************9999999*****.77..55557***********************8722213357********************************************************..**************************************************************************************************************998876 PP

>> PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.5e-05      0.24     117     186 ..     151     224 ..     135     296 .. 0.76
   2 ?   -3.0   0.0      0.36   2.4e+03       9      33 ..     310     334 ..     301     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.5e-05
   PF13292.1 117 isaalGlakardlkge....kekvvaviGDgaltgGmafealnnagelkkklivilNdNemsisenvgalskyl 186
                 + +  Gla a+++k         ++a  GDga   G  +e+ n a+  k  ++  + +N+  + ++++  s++ 
  MMETSP0890-20130614|4919_1 151 VPVGAGLAFANKYKTPpgqpMPVAIACYGDGAANQGQIWESANMAALWKLPMLFGIENNQYGMGTSISRSSSNN 224
                 6677899999998874333346789999************************9999999987776666555554 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.36
   PF13292.1   9 dlkklseeelkelaeeirefliekv 33 
                 d  +++++elk++ ++ir+++  ++
  MMETSP0890-20130614|4919_1 310 DYTAVKDDELKAIEKDIRAEVAAAC 334
                 5567888999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:01.35
# Mc/sec: 669.20
//
Query:       MMETSP0890-20130614|4920_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.0   0.0      0.075   12.5   0.0    2.3  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00026   20.8   0.0    0.00057   19.7   0.0    1.6  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.018   14.7   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          4    5.6  24.3        5.1    5.3  16.8    1.1  1  PF10243.4  Microtubule-binding protein MIP-T3


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0019       6.6       1      21 [.     195     215 ..     195     221 .. 0.90
   2 !   12.5   0.0   2.2e-05     0.075      25      69 ..     231     269 ..     226     270 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0019
                 EEEESSTTTSSHHHHHHHHCT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFsk 21 
                 l++gnLp + +  +Lk ++++
  MMETSP0890-20130614|4920_1 195 LYIGNLPDSFDSTKLKAFLNE 215
                 8***************99876 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.2e-05
                 EEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  25 iesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 i s+ +++d     ++f fVe ++ e+a+ Al  lng    g++l
  MMETSP0890-20130614|4920_1 231 IISCWVSPD-----RKFSFVELATVEAATTALG-LNGLSCLGTNL 269
                 789999999.....*******************.***77666655 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.7e-07   0.00057       1      60 [.     195     261 ..     195     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.7e-07
   PF14259.1   1 lyvrglppsvteedlreffsp....ygk.v...egvrip..rnkdgrgrgfAfvefeseedAqkalkkln 60 
                 ly+++lp s ++++l++f+++    +g+     ++v i    +   ++r f fve+++ e+A  al  ++
  MMETSP0890-20130614|4920_1 195 LYIGNLPDSFDSTKLKAFLNEalgaCGAmPkgqDEVIIScwVS---PDRKFSFVELATVEAATTALGLNG 261
                 79*******************5444444414434555543313...45****************997665 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.2e-06     0.018      11      55 ..     231     273 ..     230     274 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.2e-06
   PF13893.1  11 verikifrkkggqAfvefdtveaArkakeylngvklygktLkvey 55 
                 ++++ + ++   + fve +tveaA +a+  lng    g  Lk++y
  MMETSP0890-20130614|4920_1 231 IISCWVSPDR-KFSFVELATVEAATTALG-LNGLSCLGTNLKICY 273
                 6677788877.9****************7.************998 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  16.8    0.0015       5.1     168     290 ..      37     159 ..       3     198 .. 0.33

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0015
   PF10243.4 168 ererkkaserekkekkkdsknkkkdkekekkkeksrksekgkeeerskdeerekeedkgkdretn..rakeeeeesrksseksrrssksekkaeseveaskseekktekeskaeaeqeakakask 290
                  + r   + r  +++++ ++++++++++++++ ++r ++ + +++r+++++r+ ++d+   +  +    + +e+++r++++++r+   s++ +e +  + +  e+  + +  +++ +++ + ++k
  MMETSP0890-20130614|4920_1  37 YEHRRH-RHRRHRDRSR-DRSHDRSRDRSRDRSRDRSRDRSRDRSRDRSRDRKSKRDRYYPSGDRyyPPERDESSRRRHRHRRRDDYRSRSPDERGRSNDAYRERSLSWSPPPAVRRQMAQAKAK 159
                 111111.1111111211.11112222222222222222222222222222222222222222222111122333334444444444444444433333333333333333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:01.11
# Mc/sec: 660.62
//
Query:       MMETSP0890-20130614|4925_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.4   0.0       0.13   11.9   0.0    1.2  1  PF05118.10 Aspartyl/Asparaginyl beta-hydroxylase


Domain annotation for each model (and alignments):
>> PF05118.10  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.3e-06      0.13      94     156 ..       6      69 ..       2      75 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.3e-06
                 EEE----TTEEEEEE-EE--.----EEEETTEEE-------EEE-TTS-EEEE--SSS-EEEEE CS
  PF05118.10  94 ipHrdptnlslrlHLgLatp.degcairvdeerkswreGellifDesfeHeaanesdqeRliLl 156
                 +pH d +n+ l + +g  t+ + g   + ++ + +    +++ fD +++H    ++  +R+ L+
  MMETSP0890-20130614|4925_1   6 RPHIDAYNVGLSYIIGFGTDvNGGGLWTLADGILEIYGENFVQFDGTMPHATMAFTGGTRITLI 69 
                 79**********************************9999*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.48s 00:00:00.82 Elapsed: 00:00:01.03
# Mc/sec: 393.19
//
Query:       MMETSP0890-20130614|4927_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-12   47.2   0.0    2.7e-12   46.3   0.0    1.3  1  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     2e-16   2.7e-12      21     110 ..     148     241 ..     133     243 .. 0.91

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 2e-16
                 EEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTT....TSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHHH CS
  PF00787.19  21 yylievelktgakewtvkRrYsdFeeLhskLlrkfp....rlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrksevltsFL 110
                 y + ++e+++g++   v+Rr++dF+eL + ++  f      + +PplP+k+    ++  d++f+e+rr +L++y++rl+  p +  +++++ F+
  MMETSP0890-20130614|4927_1 148 YCVATFETRSGRELTRVHRRFRDFVELDESIQAAFAghhmLSSVPPLPSKRFKLVQDHLDSAFLESRRHELDDYVRRLCAVPRVWATPAMKPFF 241
                 556678888889999************************99**********555559**************************99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.56s 00:00:01.14 Elapsed: 00:00:00.79
# Mc/sec: 1489.38
//
Query:       MMETSP0890-20130614|4930_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        9.8    4.9   7.2        9.4    5.0   5.0    1.0  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit


Domain annotation for each model (and alignments):
>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.0   0.00069       9.4      45      75 ..      15      45 ..       2      50 .] 0.49

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00069
  PF03896.11 45 vvdedeedeaeveedekteaeeeedeeeage 75
                + + d++de++ +ed+ +  ee+ +eee+ +
  MMETSP0890-20130614|4930_1 15 HDHADDDDEVVDKEDNVQVVEEKKNEEEHSN 45
                3344555555555554444444444443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1235  (0.0903306); expected 273.4 (0.02)
Passed bias filter:                      701  (0.0512727); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.46s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 178.83
//
Query:       MMETSP0890-20130614|4938_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-82  274.9   0.0    9.7e-82  274.6   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.028   13.5   0.0    1.5  1  PF07368.6  Protein of unknown function (DUF1487)
      0.022   13.3   0.0      0.086   11.4   0.0    1.8  1  PF05893.9  Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.6   0.0   2.1e-85   9.7e-82      19     456 ..      53     499 ..      36     503 .. 0.94

  Alignments for each domain:
  == domain 1    score: 274.6 bits;  conditional E-value: 2.1e-85
                 EEEEEE---HHHHHHHHHHHHHHHH....HHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEE.C.......TTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHHTS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHH.HHTTT-EEEEE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--EE.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE.-SBHHHHHHHHHHS..----EEESS-TT--TTTS-B---TTTEE--BSSHHHHHHT CS
  PF00171.17  19 viakvaaataedvdaavaaAkaafk....awaklpaeeRaeilrkaadlleerrdelaelevletGkplaearaevaeaidvlryyagaaeklegevlps.s.......egkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleeaglPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiaka.aaknlkkvtlElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGeeekaglekgyfvePtvladvtpdmriaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavf.tedleraervaerl..eaGnvwiNdsstgdaealpfgGvkqSglGreggkegleey 456
                 +i++ a+ t e++  av+aA++af      w ++++++R   ++k  d++ + rde++ ++ +e+ k++++a+ e +++i+++r ++++++    +++ + s        g++  vrr P+G++++++P+N+Pl+ +  +l+pal++GNt+vlK+ +   l  ll+a++++   +P+gv+n+++gsg+e++  +++  ++d++ f+G+ +   ++ +   + +  kv   l G++ +i+l++a+ld av++i+ g+++++GQ+C+a++ + Vh +i+d+fv+k+++a++klk+G p+d ++ + Pl ++++ + + ++i +ak++ga+++ GG       ++  +++Pt l  v+ ++r++ eE FGP++++ kf++++ ++ +  ++  G + a+f + + + a+++ ++    +G ++iN+     ++++pf   + S +G  + ++++e++
  MMETSP0890-20130614|4938_1  53 QIGTEAHMTCEEATVAVDAAHKAFAgglgVWPSMSLRDRIITVEKYLDEVLKVRDEIISVLQWEICKNTNDATNEFDRTIKFVRDVIELIRSKGPTSIMQpSfeewttiSGVTGKVRRGPYGIILCVAPFNYPLNEMYAMLIPALIMGNTIVLKIPSIGGLAHLLTADAFAL-AFPPGVINFISGSGRETMPCIMRTGKIDMLGFIGGKKGCDSLIRDhLEPHRLKVFSQLEGNNMAIILPSANLDVAVQQIISGTTSYNGQRCTAIKIVAVHTQIADDFVQKYKQALEKLKIGLPFDAANSITPLPDENKPNYLAALIHDAKAKGATIVSGG------TKHFTLIKPTALYPVPFEARLFSEEQFGPLIPISKFDSIHPILSILANSWNGQQLAIFcSGQDKDALTLLDKTqsIFGRININSAPSRGPDQFPFSARRSSAMGTMSVSHAIEAF 499
                 57777889999**************88888************************************************************99666665554567888899*************************************************************9.6**************************************9999997787889************************************************************************************************************......56779*************************************99887777787777763778899****99995568***********************************998 PP

>> PF07368.6  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-06     0.028       5      61 ..     285     343 ..     281     388 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.1e-06
   PF07368.6   5 prlmvifedgDlnsalealveslk..ePfaegavatvlveesirdefvervrsklkpls 61 
                  ++ +i+ ++ l+ a++++++     +   + a+  v+v+ +i+d+fv++ ++ l++l+
  MMETSP0890-20130614|4938_1 285 NNMAIILPSANLDVAVQQIISGTTsyNGQRCTAIKIVAVHTQIADDFVQKYKQALEKLK 343
                 67999***************977622667789999*********************997 PP

>> PF05893.9  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.9e-05     0.086      83     272 ..     167     352 ..     151     442 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
   PF05893.9  83 yekaqpkglvvhvlagNvpllpvmsil.qglLvknvnllkvSssdpflaaallksladvdadhtlarsisvvyw.kssdtkleeeiv..qnaDvviawGGeeaikaisk.klkpg.vklikfGpkiSlavvdkeaalekaaeavAkDicvydQqAClspqvvfvekddeaeldefaekLaeaLekrakilPkaels 272
                  +++ p g+++ v + N pl  ++++l  +l+++n ++lk++s         l+ l+  da + la    v+++ ++s  +    i+   + D     GG++  ++++  +l+p+  k+ +      +a++ ++a+l+ a++++     +y+ q C + + v v+   ++ +d f++k ++aLek +  lP  +++
  MMETSP0890-20130614|4938_1 167 KVRRGPYGIILCVAPFNYPLNEMYAMLiPALIMGNTIVLKIPSIGG------LAHLLTADA-FALAFPPGVINFiSGSGRETMPCIMrtGKIDMLGFIGGKKGCDSLIRdHLEPHrLKVFSQLEGNNMAIILPSANLDVAVQQIISGTTSYNGQRCTAIKIVAVH---TQIADDFVQKYKQALEKLKIGLPFDAAN 352
                 56788999999999******99999863799999******998543......445566666.677778899999766666666666656789999999**999988776677766256666667789**************************************...789**************99888866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.45s 00:00:01.40 Elapsed: 00:00:01.09
# Mc/sec: 1165.20
//
Query:       MMETSP0890-20130614|4937_1  [L=1112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-20   71.6   0.0    1.1e-14   53.9   0.0    3.4  4  PF00168.25 C2 domain
    1.1e-08   35.1   0.3    1.9e-08   34.4   0.2    1.3  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
     0.0035   17.3   0.0       0.01   15.8   0.0    1.7  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
  ------ inclusion threshold ------
       0.49   10.0   3.7        1.8    8.2   2.5    1.9  1  PF08595.6  RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.1e-18   1.1e-14       1      84 [.     226     312 ..     226     313 .. 0.95
   2 !   13.4   0.0   1.3e-05     0.044       3      56 ..     376     436 ..     375     455 .. 0.82
   3 ?   -2.1   0.0       0.9   3.1e+03      42      73 ..     885     918 ..     880     922 .. 0.75
   4 ?   -3.4   0.0       2.3     8e+03      38      76 ..    1017    1060 ..    1009    1067 .. 0.63

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.1e-18
                 EEEEEEEESS--S-S.....TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSCSEE---E CS
  PF00168.25   1 LkvkvieAknLpnkd.....kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgkddflGea 84 
                 L++ vi +++L +kd     k+  sdpy++v++ g++    rT+  ++tl PvWn+ f+  v+  +  e++++++d+d  ++dd +Ge+
  MMETSP0890-20130614|4937_1 226 LRLCVIDGNGLVAKDrnflgKKTASDPYCVVYVCGQRL--GRTKYCSQTLAPVWNDFFEAAVDMSQSVEVRIKIFDHDATSNDDPMGEV 312
                 67889**************9999************888..9********************99999999******************98 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.3e-05
                 EEEEEESS--S-STSSSS-EEEEEEEECTTE...EE.......EEE--BSS-SSEEEE..EEEEEE CS
  PF00168.25   3 vkvieAknLpnkdkngtsdpyvkvslggaks...kk.......krTrvikntlnPvWn..ekftfe 56 
                 ++v+ A++L +      +d+++ ++ +++     +k        rT vik+t +P W    +++f+
  MMETSP0890-20130614|4937_1 376 IRVHAARGLDK-----DIDAFCIIETDQEGGigvEKygvfaevGRTGVIKKTVEPHWTpaHECEFD 436
                 68999999999.....79**********888865449999999**************966555555 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.9
                 SS-SSEEEEEEEEEEESCGGGTE..EEEEEEECH CS
  PF00168.25  42 kntlnPvWnekftfevvaeelae..leleVkded 73 
                 ++   P W +++ f+v ++  ++   ++++ d d
  MMETSP0890-20130614|4937_1 885 NKKRIPSWCDRILFKVRDNTSNSrnSRVSLLDFD 918
                 5557799999999997777766678888887777 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 2.3
                  E--BSS-SSEEEEEEEEEE..ESCGGGTE...EEEEEEECHSSS CS
  PF00168.25   38 TrvikntlnPvWnekftfe..vvaeelae...leleVkdedrfg 76  
                  ++  +++l  +W+  +tf+  ++   +a+   l+l   d  + +
  MMETSP0890-20130614|4937_1 1017 SSLAPQSLTATWQNCLTFNlfLEGGTFASrgsLHLVACDARKAK 1060
                  66778889999997777773244444444666777666666555 PP

>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2   5.6e-12   1.9e-08      24     251 .]     596     928 ..     582     928 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 5.6e-12
                 HHHTCG-SEEE..EECC-TC................................HHHHHHCHHCTTT-EEEE--------SEEE.......................ECTEEEEEEESCGCCEEEEEECTTSS-ECGGCEECCTCEEEEEEEEEE....CTEEEEEEECHHHCTSSTTSHHHH.HHHHHH........HHHHCCHHHH.....................SEEEE---S--BSSGH............................................................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB--S--EE.......BHHHCCCCEEEEECTHHCHSSSS CS
  PF03372.18  24 llqsedpDvll..LQEvded................................plsellatglasglglagdgkvggggggda.......................lgggglallskypldksirrtfqldgkagiavprlssknkgdvpvrfr....ggktlalvntHltpgnrlrqrder.allaei........dkladdsrgs.....................pvilaGDfNsrpdspd............................................................kgfrenaadflpgdgfddglrallphlllptspgttdtyekageparlDyilv.......ssgwpalvvsgalllpdrggSDH 251
                 +l+  ++Dv++  LQE ++                                 +                                                     g+  l +++++ l+   + + + +  +g ++      nkg+++  +        +la++++Hl+++++   r++r  ++ ei        +        s                      ++++GD+N+r   ++                                                            +g+ ++ + f+p+++  +g+++++ +              k+++p+++D+il+       +s+ +++ +   ++ p + +SDH
  MMETSP0890-20130614|4937_1 596 ELRGLSADVVAigLQESTTSklgrgeprvaaitqdfddssttddntssnkggA----------------------------VtlslkkslqqellpghelvcdasRGQMRLFVFVRNQLAGGCHERRVAYENTGLGH---VVSNKGGIAFAMClagaSHVSLAFFSAHLAAHEGRTFRQRRnSDVCEIfsgcrselA--------SkssaalrspispaldlssqldFCFFVGDLNYRVMTTTngddpvvdeatvnndddddddeaddddeeanndyndtalasidflrdelslemaenrvfcNGWIAPLPPFPPTFKVVRGYQRCVYN--------------KKRIPSWCDRILFkvrdntsNSRNSRVSLLDFDYIPQIKSSDH 928
                 5667789**********999998888888887776655555543333333331............................03344444455555555557777788999******987766666664444444443...34466665555559999889999*****99966555544554555555444442220........13444567777888888889999**************************************************************************************************666..............689**********988877766666666666666666666999 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06      0.01       9      78 ..     112     183 ..     106     185 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3e-06
                 TSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHH....HHHHHHHHTHHSEEEE CS
  PF00595.19   9 rgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvsh....deavqaikgkkgevtL 78 
                   glG+ l++g+ ++   + v++v    +a +g +++G+++ls+ g+ +  + +     ++vq +k++ ++vtL
  MMETSP0890-20130614|4937_1 112 KLGLGLALSRGKRQG-LAVTVTRVDDEVSASTG-IQVGHILLSIEGKQIYVFDEasfsTHVVQRLKNAPRPVTL 183
                 457888888888887.99***************.************8775544311114577777777777766 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.5   0.00053       1.8      52      91 ..     803     839 ..     780     842 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00053
   PF08595.6  52 epridedenelddededdeeeededeeeaeenplkkikle 91 
                  p +de   ++dd+d+dde ++d++e+   +n +++++l+
  MMETSP0890-20130614|4937_1 803 DPVVDEATVNNDDDDDDDEADDDDEEA---NNDYNDTALA 839
                 456666666666666555555554444...4666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.58u 0.39s 00:00:01.97 Elapsed: 00:00:01.21
# Mc/sec: 2202.27
//
Query:       MMETSP0890-20130614|4939_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-13   48.2  40.7    7.1e-13   47.9  28.2    1.1  1  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9  28.2   5.2e-17   7.1e-13       2     351 ..      92     450 ..      91     452 .] 0.72

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 5.2e-17
  PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrr..vlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg..........WravFlilailsllaavlvllllprepperkrkspaeel..rkepaplvpawklllkppvl..willialllfffvfsg.lltllplylqevlglspglllaglllgllaligaigalllgrlsdr....lgrrrrlllallllllaalglallaft...........ssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslgga 351
                 +l++f+a++ +++++p++p ++   lg+ + ++  +  +  + ++ + +++G+l d++G++r  ++ll+ ++  +g + +++  s+ + l v+r++ G+g ga f + + +++++f+ +  g+a+++ ++  +lG  ++ +l + ++              Wr +++i a+l+ ++a+  +++l  ++++r+  +   ++     +++ ++  ++ +   ++  w ll + + ++f++ + +     ly+  +  ++ g + a+l+ +l+++++++++ ++g++sd              + + l + +l+l++ +++              ++l+++++++  + g+ f+++ ++    +     G + +++++ g++g++
  MMETSP0890-20130614|4939_1  92 WLSFFIAFTCWFAFAPLMP-IIRLCLGMPVKQVFAVNIASVASTVSTRFIVGPLCDKIGPKRcqTFLLAWITVFVG-IGAAV--SSGWSLGVVRFMIGFG-GATFVVNQFWTSQMFANDIVGLANACTAGWGNLGGGVTQMLMAGVYVFMKkiagfgtceaWRPAMIIPAALAGVCAL--GMYLSSDDSPRGDLNYLYDKgvL--QRKTAK-ESMKVGYSNInsW-LLGLQYATCFGVELhMNNAAALYFAIRPSFDVGPIDAALIASLFGWMNLFARSAGGYFSDLgnkiS-------GMRGRLWAHTLCLFFEGLAiivfsrmatlqGAIPALMVFSFFVQAAEGTSFGIVPYVEPTAL-----GGVCAVVGAWGNIGAV 450
                 799****************.9***********9999999999999*****************54555555555555.55553..34447***********.8**********************************999666665553333666799*******************77..58888888888888777776442..333333.2333333333447.6666666666666686666666655555555547**************************844441.......33333333333333333332222222344333455555666666677777777666666655.....7777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.71
# Mc/sec: 1525.57
//
Query:       MMETSP0890-20130614|4941_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00019   21.0   9.8    0.00039   20.0   6.8    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0002   20.8   9.9    0.00034   20.1   6.9    1.3  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0013   18.2  10.5     0.0022   17.5   7.3    1.4  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
       0.44   10.3   7.6        1.1    9.0   5.3    1.7  1  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   6.8   1.1e-07   0.00039       2      45 ..     101     150 ..     100     151 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
   PF13923.1   2 rfsCpiCleelen....pviltpCgHlyCkkCieqwleks..kkkCPiCr 45 
                 +++Cp+C+++++        l +Cg  +C +C+ +++++    +kCP+Cr
  MMETSP0890-20130614|4941_1 101 KDICPLCMNRMSLvlekSSLLSCCGKQVCATCAHRVFHSIdyLQKCPFCR 150
                 689********8888885578****************9977778*****9 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   6.9   9.8e-08   0.00034       2      47 ..     101     153 ..     100     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.8e-08
   PF13920.1   2 kktCvvCler.....eadvlllpCgHlclCeeCaerllk...rkkkCpiCrspi 47 
                 k+ C++C++r     e++ ll  Cg + +C++Ca+r+       +kCp+Cr+  
  MMETSP0890-20130614|4941_1 101 KDICPLCMNRmslvlEKSSLLSCCGKQ-VCATCAHRVFHsidYLQKCPFCREVL 153
                 788******98888899999999****.*********9999999*******865 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   7.3   6.4e-07    0.0022       2      45 ..     103     151 ..     102     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.4e-07
   PF13639.1   2 eCaiCldelse.geevvrlp.CgHvfHeeCldewlrss...nsCPlCrk 45 
                  C++C+  +s   e+   l+ Cg   +++C ++ ++s    ++CP Cr+
  MMETSP0890-20130614|4941_1 103 ICPLCMNRMSLvLEKSSLLScCGKQVCATCAHRVFHSIdylQKCPFCRE 151
                 6********7796777777769*************9843447******7 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.3   0.00034       1.1       4      47 ..      96     140 ..      93     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00034
  PF01363.16   4 vpdaeakkCeiCakkFslt.rrrhhCrlCGkvvCskCsskrvekl 47 
                  +d++ + C+ C ++ sl+ ++     +CGk vC++C +  ++++
  MMETSP0890-20130614|4941_1  96 LDDDDKDICPLCMNRMSLVlEKSSLLSCCGKQVCATCAHRVFHSI 140
                 5899999*********877366677889**********8887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1091  (0.0797981); expected 273.4 (0.02)
Passed bias filter:                      523  (0.0382534); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.84
# Mc/sec: 1201.03
//
Query:       MMETSP0890-20130614|4943_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-79  263.2   0.1    6.5e-79  263.0   0.1    1.0  1  PF00025.16 ADP-ribosylation factor family
    1.7e-13   50.1   0.0    1.9e-13   50.0   0.0    1.1  1  PF00071.17 Ras family
    4.6e-13   48.6   0.0    5.4e-13   48.4   0.0    1.0  1  PF09439.5  Signal recognition particle receptor beta subunit
    5.3e-11   41.7   1.1    7.6e-08   31.3   0.1    2.1  2  PF00503.15 G-protein alpha subunit
    7.3e-10   38.2   0.0    8.9e-10   37.9   0.0    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
    1.2e-08   35.3   0.0    1.5e-08   35.0   0.0    1.1  1  PF08477.8  Miro-like protein
    3.9e-05   23.5   0.0    5.2e-05   23.1   0.0    1.2  1  PF01926.18 50S ribosome-binding GTPase
     0.0065   15.4   0.1      0.012   14.5   0.1    1.3  1  PF01591.13 6-phosphofructo-2-kinase
  ------ inclusion threshold ------
      0.027   13.8   0.1       0.22   10.8   0.0    1.9  2  PF00009.22 Elongation factor Tu GTP binding domain
      0.048   13.4   0.1      0.082   12.6   0.0    1.5  1  PF13671.1  AAA domain
       0.15   11.4   0.3       0.29   10.4   0.1    1.6  2  PF00448.17 SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.0   0.1   5.3e-82   6.5e-79       2     174 ..       6     176 ..       5     177 .. 0.98

  Alignments for each domain:
  == domain 1    score: 263.0 bits;  conditional E-value: 5.3e-82
                 CCCHHCC--.TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHHH CS
  PF00025.16   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 ++i +++++ kke+ril++GLD+aGKtTil+klkl+e+vtt+PTigfnve++e+kn++ftvwDvGGq+k+RplW++Y+++t+++ifvvDs+dr+R+++a++eL+++l+e+el+e +llv+aNKqDlp+a+s++e++++lgl+ l+ +r+++iq+c+a++g+gl+egl+wls +
  MMETSP0890-20130614|4943_1   6 SRIWERMFG-KKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDNARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLNGLR-HRQWYIQACCATTGDGLYEGLDWLSAT 176
                 678889999.9**************************************************************************************************************************************.************************976 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.5e-16   1.9e-13       2     121 ..      20     138 ..      19     178 .. 0.78

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.5e-16
                 EEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHH.HHHHHHHHHSTTTSSEEEE---TTGGG...G-S CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDlee...kra 121
                 +++vG  a GKt++l++   ++  ++ ++Tig++    +  v+ k++++++wD  Gq++ + l + yy++++g++ v d ++r+  +n++ ++++ +++   ++  +++ +nK Dl +     +
  MMETSP0890-20130614|4943_1  20 ILMVGLDAAGKTTILYKLKLGEVVTT-IPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDNARdELHRMLNEDELRESILLVFANKQDLPNamsAAE 138
                 899*******************8875.9***87654..4..55689**************************************99999955555555555566778888******98443333 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   4.4e-16   5.4e-13       2     137 ..      16     143 ..      15     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 4.4e-16
                 ---EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHHHHHHH CS
   PF09439.5   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspklikdaL 137
                 ++ ++l+vGl  +GKT+++ +L  ++v +t   +  +  + ++   k+ ++t+ D+ G++k+r  l  +  + ++ +gl+fvvDS  d  +v +  + l  +l + e l++++ +l+  nKq+l  a s+  + d+L
  MMETSP0890-20130614|4943_1  16 KEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIgFNVETVEY---KNISFTVWDVGGQDKIRP-LWRH--YYQNTQGLIFVVDSN-DRDRVDNARDELHRMLNEDE-LRESI-LLVFANKQDLPNAMSAAEMTDKL 143
                 6679******************************889999999...*****************7.5555..58899********97.66678888899999999999.56666.56667*****9999998888776 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00028      0.34      56      79 ..      15      38 ..      10      40 .. 0.90
   2 !   31.3   0.1   6.1e-11   7.6e-08     208     275 ..      45     111 ..      40     130 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00028
                XXEEEEEEEXXXXXXXHHHHHHHH CS
  PF00503.15 56 kkevklLlLGqgeSGKsTilkqfk 79
                kke+++L++G +  GK+Til ++k
  MMETSP0890-20130614|4943_1 15 KKEMRILMVGLDAAGKTTILYKLK 38
                89******************9887 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 6.1e-11
                 XXXXXXXEEEEEXX.XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEEGGGTTXBXSSXTTSBHHH CS
  PF00503.15 208 rlkttGiseikfevesktefrlvDvGGqrserkkWipcfedvdaiiFlvslsefdqvlyedesvnrle 275
                  ++t+G++  ++e+ +++ f ++DvGGq + r  W +++++++ +iF+v   + d v +  ++  r+ 
  MMETSP0890-20130614|4943_1  45 TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDNARDELHRML 111
                 57889999999999.***********************************999999988888876663 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   7.2e-13   8.9e-10       1     125 [.      19     132 ..      19     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 7.2e-13
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesre.leedlekfqeileallqyspeakvfvlihKmDlis 125
                 ++L++G   +GKt+    i+ ++   ++++   Ti  + ++v+  +n+++ +wD+gGq+++          + ++n + li+V+D++ r+ ++++ ++++++l+   +  +e  + v+ +K Dl +
  MMETSP0890-20130614|4943_1  19 RILMVGLDAAGKTT----ILYKLKLGEVVTTIPTIGFNVETVE-YKNISFTVWDVGGQDKIRPL-----WRHYYQNTQGLIFVVDSNDRDrVDNARDELHRMLNE--DELRESILLVFANKQDLPN 132
                 69***********9....899999******************7.889***********998877.....4899**************886677777777777764..3334555666666666655 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.2e-11   1.5e-08       1     119 []      19     129 ..      19     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.2e-11
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 +++ vG   +GK+++l +l  +e +       ++  t++ + ++v+ ++ ++ +wd+gg++++     +  +++++ ++v+d++d++ +++++  l ++ +  +l +++ + +++nk+D
  MMETSP0890-20130614|4943_1  19 RILMVGLDAAGKTTILYKLKLGEVV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDNARDELHRMLNEDEL-RESILLVFANKQD 129
                 78999***************9*999.......4444455555678888888**********999998999*****************666666666666665554.3466789999988 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.2e-08   5.2e-05       2     103 ..      20     112 ..      19     136 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.2e-08
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETTEEEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS..HHHHHHHHHHHHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkkekiilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa..vlkeadkellnele 103
                 + +vG+  +GK+t++ +L   +++ +  + g   ++ ++++     ++++D+ G       d     i+  +++  +++++l++vvd+++  + ++a  el ++l+
  MMETSP0890-20130614|4943_1  20 ILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETvEYKN---ISFTVWDVGGQ------D----KIRPLWRHYyQNTQGLIFVVDSNDrdRVDNARDELHRMLN 112
                 789***************96667566565566666634433...2389******2......2....478899***9***********7775633334555555552 PP

>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   9.6e-06     0.012      11      51 ..      15      55 ..       7      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.6e-06
  PF01591.13 11 nsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgk 51
                ++++ i++vGL a gKt+i  kl      ++++t  Fnv  
  MMETSP0890-20130614|4943_1 15 KKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET 55
                56788*****************9888888888888888865 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.15   1.9e+02       3      23 ..      17      37 ..      15      45 .. 0.80
   2 ?   10.8   0.0   0.00017      0.22      63     141 ..      56     138 ..      41     175 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.15
                EEEEEEEESTT---HHHHHHH CS
  PF00009.22  3 irnigiighvDhGKtTltdal 23
                 + i ++g   +GKtT++ +l
  MMETSP0890-20130614|4943_1 17 EMRILMVGLDAAGKTTILYKL 37
                567788888899****99877 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00017
                 EET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-..S-HHHHHHHHHHHHTT--...EEEEEE-TTST.CHHHHH CS
  PF00009.22  63 leketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqTeevlrlakklgvk...iivviNKiDrv.eaelee 141
                 +  e+k+  +++ D  G ++      +  + + g + vvd+++   v +   e+ r++++ +++   ++v+ NK D++   ++ e
  MMETSP0890-20130614|4943_1  56 V--EYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRdrVDNARDELHRMLNEDELResiLLVFANKQDLPnAMSAAE 138
                 3..377778888888888887777778889999*********8888*****************9998999******995333333 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.6e-05     0.082       2      39 ..      20      55 ..      20     130 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.6e-05
   PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfg 39
                +l+vGl ++GK+t + +l  klg v+ + +t+   ++ 
  MMETSP0890-20130614|4943_1 20 ILMVGLDAAGKTTILYKL--KLGEVVTTIPTIGFNVET 55
                79***********99995..488777777776666654 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00024      0.29       3      21 ..      19      37 ..      17      43 .. 0.91
   2 ?   -2.0   0.0       1.5   1.9e+03      94     122 ..      97     124 ..      82     148 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00024
                EEEEE-------TTTHHHH CS
  PF00448.17  3 villvGlqGaGKTTtlaKL 21
                 il+vGl  aGKTT l KL
  MMETSP0890-20130614|4943_1 19 RILMVGLDAAGKTTILYKL 37
                59*************9998 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.5
                 -GTTCHHHHHHHHHHHHHSSSSEEEEEEE CS
  PF00448.17  94 rlqndkelmeelkkikkvlkpdevllvld 122
                 r + d +  +el+++ +  +  e++l + 
  MMETSP0890-20130614|4943_1  97 RDRVD-NARDELHRMLNEDELRESILLVF 124
                 44443.33456655555554444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 657.18
//
Query:       MMETSP0890-20130614|4947_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 142.49
//
Query:       MMETSP0890-20130614|4949_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 432.68
//
Query:       MMETSP0890-20130614|4942_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-70  234.6   0.0    4.5e-70  234.0   0.0    1.3  1  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
    9.9e-60  200.7   0.1    1.6e-59  200.0   0.1    1.4  1  PF00044.19 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
     0.0009   19.0   0.5     0.0026   17.5   0.4    2.0  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus
     0.0044   16.0   0.1      0.013   14.5   0.1    1.8  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.045   13.1   0.0       0.12   11.8   0.0    1.7  1  PF00107.21 Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0   0.0   1.6e-73   4.5e-70       1     157 []     156     313 ..     156     313 .. 1.00

  Alignments for each domain:
  == domain 1    score: 234.0 bits;  conditional E-value: 1.6e-73
                 -HHHHHHHHTTSEEEEEEEEEEEESS-T.........T-S-----S-ESSSSSS-----HHHHH-GGG---EEEEEEEES-SS-EEEEEEEEEE----HHHHHHHHHHSTT-TT----SHHHHHH-------GGG-SEEEEGGG-EEETTEEEEEEEE CS
  PF02800.15   1 LaplakvlndkfgiekglmttvhaytadQklvDgps.kdlrraraaaeniiptstgaakavgkVlpelkgkltgmAlrVPtpdvsvvdlvvelekkvtveevnaalkeaaegalkgilsyteeelvssDfvgdphssifdaketivlnenlvkvvawy 157
                 Laplakv+nd+fgie+glmttvha+ta Qk+vDgps kd+r++ra   niip+stgaakavgkV+p+l+gkltgm++rVP+++vsvvdl+ +l+k ++++e++a++k+a+eg++kgil+ytee++vs+Df+g++ +s fdak++i+l +n+vk+v+wy
  MMETSP0890-20130614|4942_1 156 LAPLAKVVNDTFGIEEGLMTTVHAVTASQKTVDGPSkKDWRGGRAGCYNIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPVANVSVVDLTAKLKKGASYDEIKAVIKAASEGPMKGILGYTEEDVVSTDFIGESCTSYFDAKAGISLTDNFVKLVSWY 313
                 8************************************************************************************************************************************************************9 PP

>> PF00044.19  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.1     6e-63   1.6e-59       1     151 []       3     151 ..       3     151 .. 0.99

  Alignments for each domain:
  == domain 1    score: 200.0 bits;  conditional E-value: 6e-63
                 EEE--B-------HHHHHHHCHTTEEE-EEE-TTS-HHHHHHHHH--S-----SS-EEE---EEEETTEEEEEE--SSGGGS-GGG----EEEE------SHHHHCHHHH----EEEESS--SS..SEB------GGG--TTTSEEE---H CS
  PF00044.19   1 ikvgInGfGriGrlvlrallkqedlevvaindlagdletlayllkydsvhgrfkgeveveeeklivngkkikvlaerdpeelpwkelgvdlVvesTGvftskekaekhlkagakkVvisapakdeaaktivvgvNeeeydpeekivsnaSC 151
                 ik+gInGfGriGrlv+ra+++++ +evvaind++++ +++ay+lkyd+vhgrf+g+ve   ++l vng+ +k+++e+dp+ + w++ g+d+VvesTGvft++eka++hlk gakkVvisap+kd  a+++v+gvN e+ydp++++vsnaSC
  MMETSP0890-20130614|4942_1   3 IKIGINGFGRIGRLVMRAAAANPAMEVVAINDISISKDYMAYMLKYDTVHGRFNGTVELAADGLLVNGNLVKTFEEKDPTIIGWGASGADYVVESTGVFTTTEKASAHLKGGAKKVVISAPSKD--APMFVCGVNLEKYDPSMDVVSNASC 151
                 79**************************************************************************************************************************..7************************ PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.4   9.4e-07    0.0026       1      35 [.       3      36 ..       3     122 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.4e-07
                -EE--B--------HHHHHHHH.---EE-EE---- CS
  PF01113.15  1 ikvavvGasGrmGkevikaieeaedlelvaavdrk 35
                ik++++G+ Gr+G+ v++a+ +++ +e+va  d +
  MMETSP0890-20130614|4942_1  3 IKIGINGF-GRIGRLVMRAAAANPAMEVVAINDIS 36
                79******.********************987765 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.8e-06     0.013      38      71 ..       4      38 ..       2      56 .. 0.77
   2 ?   -3.0   0.0       1.1     3e+03      54      91 ..     226     263 ..     193     265 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.8e-06
                EEE-B-------HHHHHHH.H---EEEE--SS--. CS
  PF02826.14 38 tvGiiGlGrIGqavakrlk.afgmkvlaydrskkk 71
                ++Gi G+GrIG+ v++ ++    m+v+a++    +
  MMETSP0890-20130614|4942_1  4 KIGINGFGRIGRLVMRAAAaNPAMEVVAINDISIS 38
                69**************9995678899999887543 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.1
                 HHHH---EEEE--SS--...HHHH---EE--CCCCCCC CS
  PF02826.14  54 rlkafgmkvlaydrskkkeeeeeelgaevvsleellae 91 
                 +l+++ ++v + + s  + + + ++ga++++++++++ 
  MMETSP0890-20130614|4942_1 226 KLTGMSFRVPVANVSVVDLTAKLKKGASYDEIKAVIKA 263
                 56666666666666655545444557777777777765 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.2e-05      0.12      57      96 ..      89     128 ..      72     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.2e-05
                 --BSEEEEET-.CTHHHHHHHCB-----EEEC----EEEE CS
  PF00107.21  57 kgvdvviecvgagatfeqalkllapgGrvvvvggtsganv 96 
                  g+d+v+e++g+  t e a ++l+ g + vv+ ++s++ +
  MMETSP0890-20130614|4942_1  89 SGADYVVESTGVFTTTEKASAHLKGGAKKVVISAPSKDAP 128
                 79*********************************94443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.62
# Mc/sec: 1290.94
//
Query:       MMETSP0890-20130614|4948_1  [L=1023]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-51  174.2   0.0    3.8e-51  173.6   0.0    1.2  1  PF00069.20 Protein kinase domain
    1.9e-29  102.4   0.0    2.9e-29  101.8   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    6.1e-06   26.0   0.8    6.1e-06   26.0   0.5    2.1  3  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.021   13.8   0.1      0.045   12.7   0.0    1.5  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6   0.0   1.1e-54   3.8e-51       2     250 ..     646     900 ..     645     907 .. 0.90

  Alignments for each domain:
  == domain 1    score: 173.6 bits;  conditional E-value: 1.1e-54
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-....TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB...-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHH.HHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS-- CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsH....pnivkllevfeekdelylvleyveggdlfdllkkegkl...seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEv.llkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt 250
                 e l+ lG+GsfG V   ++  +g+++A+K+l+k++   + +++ +r E  +l +lsH    p++ ++  +f++ ++ly+ ++y+++g+l+ +lk++++      + + +++ +++++le++H   ++HrDLKp+N+L+d +g++ ++DFGla      +   + +++vgt +Y+APE+ l+++++y+++vD W+lG++++e+ +g +pf+ +   + +e+++ki + + +++   + +  +e+k  ++ ll kdp+kRl 
  MMETSP0890-20130614|4948_1 646 EPLKVLGKGSFGAVALSRRLADGQIFAIKVLEKRRLVGQRAESMARlERDVLDQLSHarhmPFVARMRFAFHSISKLYIAMDYFPHGSLHFVLKQDTPTrryGRKAALMVCAELASALEHVHAACVVHRDLKPSNVLVDARGHVALSDFGLATRTaaRHAPLRKRSFVGTIDYAAPELlLKSCTKYGEAVDCWALGCLTFEMGSGLPPFHAD---TTRETFAKIVRAEPKFKAIRDLK--PEAKTTLNLLLSKDPNKRLG 900
                 56789*****************************9988887776667********973334668999999999*********************555554449999**********************************************9986444555899*************45589***************************99...999********999999886655..******************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   8.6e-33   2.9e-29       4     249 ..     648     898 ..     645     902 .. 0.84

  Alignments for each domain:
  == domain 1    score: 101.8 bits;  conditional E-value: 8.6e-33
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECT.TSBHHHHHHHHH.HHHHHHHT-BTTB--BEEEBE....SSSSEEEEEE---B--HHHHHHHT.GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE..EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke.saeeeekeefle.eakimkklkhpnivkllgvct....keepllivteyvkgGdLlefLrkk.ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypgl.sneevlellkegkrlekpekcpeelyelmkqCweeepeeR 249
                  k lG+G+fG V   +       + +  a+K+l++ +   ++ e++ + e +++ +l+h + + +++ +     + ++l+i ++y ++G+L+ +L++   +++   k  l +++++a+++e+ ++  +vHrdL   NvL++ + +v +sDfGLa ++  ++   +k++    + + apE+l ++   + ++ D W+ G+l++E+ + g  p++   + e++++ ++++ + ++ ++ ++e ++ ++  ++++p++R
  MMETSP0890-20130614|4948_1 648 LKVLGKGSFGAVALSRRL----ADGQIFAIKVLEKrRLVGQRAESMARlERDVLDQLSHARHMPFVARMRfafhSISKLYIAMDYFPHGSLHFVLKQDtPTRRYGRKAALMVCAELASALEHVHAACVVHRDLKPSNVLVDARGHVALSDFGLATRTAARHAPLRKRSFVGTIDYAAPELLLKSCtkYGEAVDCWALGCLTFEMGS-GLPPFHADtTRETFAKIVRAEPKFKAIRDLKPEAKTTLNLLLSKDPNKR 898
                 578*********999988....67788999999652444444555554688888888776544444444333336777******************9834667888899************************************************8888889999999**********98875569*****************9.667876662666677777*****************************99 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       1.4   4.6e+03     147     160 ..     391     403 ..     345     439 .. 0.48
   2 ?   -3.2   0.0       1.4   4.8e+03     116     156 ..     562     600 ..     493     606 .. 0.65
   3 !   26.0   0.5   1.8e-09   6.1e-06      42     196 ..     660     798 ..     654     803 .. 0.66

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHH CS
  PF01636.18 147 eleervlaalaall 160
                 +++  ++ ++a++l
  MMETSP0890-20130614|4948_1 391 RAAT-AATRCARQL 403
                 1111.333333333 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.4
                 GHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH CS
  PF01636.18 116 adflapyltllrllesataalvasellelleeleervlaal 156
                 a+++  + +++  l ++ta++++ ++   + +++e+v +a 
  MMETSP0890-20130614|4948_1 562 ARRSS-TGNFADALRESTADDDDNAQAH-RRAMDEQVVRAV 600
                 33333.3444455555544333333333.667777766665 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 1.8e-09
                 HHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18  42 allrlLakagipvPevlagdtdddvlgllfalleyvpgevlerklnarqlpallealaellaalhqadpaadpladflapyltllrllesataalvasellelleeleervlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                 al r+La+  i + +vl     + + g  ++ + +++  vl++    +++++    +a++++a+h++ +   ++++f++  l +  + +  t+++ + + l     ++e  la  +++++   +++++H+Dl+p N+lvd   g+v++ Df++a+
  MMETSP0890-20130614|4948_1 660 ALSRRLADGQIFAIKVLE---KRRLVGQRAESMARLERDVLDQ---LSHARH-MPFVARMRFAFHSISKLYIAMDYFPHGSLHFVLKQDTPTRRYGRKAALM---VCAE--LASALEHVH---AACVVHRDLKPSNVLVD-ARGHVALSDFGLAT 798
                 566666666664556666...5555555666666666666666...333333.3467888888888877777777777766666666666666333333333...2444..555666666...8****************.778999*****998 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.045     117     172 ..     749     801 ..     731     813 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
   PF06293.9 117 eelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrl 172
                  +   ++  +++++ + +h+a v H+dl + n+l+d+++   +v+l D+  a r  
  MMETSP0890-20130614|4948_1 749 RKAALMVCAELASALEHVHAACVVHRDLKPSNVLVDARG---HVALSDFGLATRTA 801
                 45555667788999999*********************9...99999997666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.46u 0.39s 00:00:01.85 Elapsed: 00:00:01.09
# Mc/sec: 2249.06
//
Query:       MMETSP0890-20130614|4952_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   15.7   0.1      0.026   14.2   0.0    1.8  1  PF08100.6 Dimerisation domain


Domain annotation for each model (and alignments):
>> PF08100.6  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.9e-06     0.026      26      51 .]     324     348 ..     313     348 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-06
   PF08100.6  26 selaskLptknpeapvlldRlLRlLa 51 
                  ++++ L+ +++e p+l+ R+LR+La
  MMETSP0890-20130614|4952_1 324 HQIIELLA-QHQEQPQLITRFLRILA 348
                 45666666.****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.78
# Mc/sec: 1468.54
//
Query:       MMETSP0890-20130614|4951_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-08   32.9  24.2    3.7e-08   32.9  16.8    1.9  2  PF02008.15 CXXC zinc finger domain
  ------ inclusion threshold ------
      0.031   13.6   0.1      0.064   12.6   0.1    1.5  1  PF14066.1  Protein of unknown function (DUF4256)


Domain annotation for each model (and alignments):
>> PF02008.15  CXXC zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9  16.8   5.5e-12   3.7e-08       3      48 .]      12      56 ..      10      56 .. 0.96
   2 ?   -2.5   0.1      0.63   4.3e+03      24      29 ..     102     107 ..     100     116 .. 0.64

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 5.5e-12
                ----B-----HHHHS--.----CCCCTSTT-----------GGG-- CS
  PF02008.15  3 lkkrkrCgeCeaCqrtedCgkCsaCrdkkkfggpgkkkqkCrkRrC 48
                + krkrCg Ce+C++ e CgkC++C+d+kk gg+g+ ++ C+kR C
  MMETSP0890-20130614|4951_1 12 KTKRKRCGCCEGCRAIE-CGKCRYCLDMKKRGGSGTLRRPCEKRGC 56
                579**************.**************************99 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.63
                 -CCCCT CS
  PF02008.15  24 CsaCrd 29 
                 C+ C+ 
  MMETSP0890-20130614|4951_1 102 CTLCQA 107
                 555544 PP

>> PF14066.1  Protein of unknown function (DUF4256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.4e-06     0.064       9      44 ..     109     144 ..     101     181 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.4e-06
   PF14066.1   9 feknmerhkgleWekvqekleaepeklkslkemeet 44 
                  e++ +r ++++W+++++kl+++++++++l ++ ++
  MMETSP0890-20130614|4951_1 109 AEEHSDRDQNIDWSAISTKLQNQENSFDALLTLRRA 144
                 5899************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       850  (0.0621709); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 1475.47
//
Query:       MMETSP0890-20130614|4953_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-47  159.2   0.0    3.2e-46  156.6   0.0    2.1  2  PF12437.3  Glutamine synthetase type III N terminal
    1.3e-28   99.7   0.0    3.1e-28   98.5   0.0    1.6  1  PF00120.19 Glutamine synthetase, catalytic domain
  ------ inclusion threshold ------
       0.11   10.7   0.0       0.16   10.1   0.0    1.1  1  PF03547.13 Membrane transport protein


Domain annotation for each model (and alignments):
>> PF12437.3  Glutamine synthetase type III N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0     7e-50   3.2e-46       5     165 .]      28     190 ..      24     190 .. 0.95
   2 ?   -0.1   0.0      0.11   4.8e+02     105     123 ..     470     488 ..     465     524 .. 0.88

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 7e-50
   PF12437.3   5 elfgsnvfnekvmkerlpkevykklkktiekgekl.dkevadvvakamkewalekgathythwfqPl......tgltaekhdsflepkedgkvieefsgkeLikgepdassfpsgglratfeArGYtawdvtspafikeeegktlciPtvfvsytGeaLDkktpllrs 165
                 + +g+++f+ +  +++l+k  +     t+++ge++ d+  ad+va+a+ +wa++++a+++th+fqPl       g+++ +++++++++++g ++ +++gk+L+kge+d+ss+p+gglr t+ A+GY+a d++sp++++    +t++iP++fvsy+G+aLD+ktpllrs
  MMETSP0890-20130614|4953_1  28 DGYGEQCFRGALANKYLEK--HGLPAGTLDNGEWMtDMVKADKVAEAIVDWAVSHDASVFTHIFQPLgssgvrHGMAGMVQNAMFKFDHQGMPVWDLKGKDLLKGETDGSSYPNGGLRGTHMAGGYVALDPSSPIYLRG---DTVFIPSCFVSYYGDALDEKTPLLRS 190
                 67*****************..777889*******978899***************************98887679***************************************************************5...89***********************8 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.11
   PF12437.3 105 dassfpsgglratfeArGY 123
                  +s fp gg+r  f+A G 
  MMETSP0890-20130614|4953_1 470 RTSPFPYGGHRFEFRAVGS 488
                 5799*******99999885 PP

>> PF00120.19  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   6.8e-32   3.1e-28      18     216 ..     210     426 ..     199     445 .. 0.74

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 6.8e-32
                 ----EEE--B-EEEEESEEEE.......E------EEEEE---------B-TT..TS--HHHHHHHHHHHHH----EEE-EEEE----EEEEE--EEHHHHHHHHHHHHHHHHHHHHH---EEE--S-S---------BEEEEEE....----BSS.....-----.----HHHHHH----TTTHHHHHHHHS-STGGGGTS--..---SSSEEEEE CS
  PF00120.19  18 eglepvfgpElEFflfdkerp.......egspektglpsdkgqvkggyfsvap..ldeaedirreivkalealgievetihhEvapgQfEidlkfadaleaaDnlvlfkyvvkevAekhGltatfmpKPlfgdnGsGmHvhlSlwda..kdgknlf.....adedgeadlsetarqflgGllkhakaitaltaptvnsykRlvp..gteapvavawg 216
                  g+++++g+E+EFfl+ +e +        ++++  g+++++gq+ ++++ ++      a +++++  +++ +lgi+++t h Evap Q+E++  f +a++  D+ ++++++++e+A+++Glta+f +KP+ + nGsG+H ++S+ ++  ++  nl+     a+ +g +d+  + + ++        +++ ++  + +++ Rl +  +++a+v++++g
  MMETSP0890-20130614|4953_1 210 PGIQSNIGLEQEFFLVPREAYlrrpdlqLAGRTVIGADAPRGQEMCDHYMGPLsfATPALACINAAQQECFRLGIPLRTRHREVAPNQYEVAPLFGTATTQIDQNIVVMQIIEETAANYGLTALFQEKPFNNINGSGKHNNWSIGTTdiRNPVNLLnvlqvAKASGNNDIFPVVMAAIISAVDIHGDLMRMAIASPGNDFRLGAceAPPAIVSTYLG 426
                 6899**************6662222333444467777777********9998866778999*********************************99*************************************************975544444431111123333344444444444444444455555555566666666665555566655555 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.5e-05      0.16     318     357 ..     379     427 ..     378     436 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.5e-05
  PF03547.13 318 lgPavmllavlllgLrglllkvaivq.........aalPqgivlfvfak 357
                 + P+vm++++ +++++g+l+++ai +            P++iv +++ +
  MMETSP0890-20130614|4953_1 379 IFPVVMAAIISAVDIHGDLMRMAIASpgndfrlgaCEAPPAIVSTYLGE 427
                 57********************************9999*****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:01.07
# Mc/sec: 1601.30
//
Query:       MMETSP0890-20130614|4959_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-17   63.0   0.1    2.9e-17   62.4   0.1    1.2  1  PF03942.10 DTW domain


Domain annotation for each model (and alignments):
>> PF03942.10  DTW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.1   2.2e-21   2.9e-17       3     198 ..      65     257 ..      63     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 2.2e-21
  PF03942.10   3 klCekCkvpvkdclcellprlelr...lqvlilkhpkesdkklnTarllallladvr..astwsrfeqderlnellaapdaqvvllfPseeseeleevsealseevlrestldegkplrlillDgTWkqarkilkkserl.relpqvslateassey......rlrkqps.egalsTiEaaaqlLselesearaveeaLlkvlealvrr 198
                  +C +C+++ + c+c ++++l+l     ++ +++h ke+     Ta l+ ++  d    +  + r ++ e+ +  ++  + + ++lfPs +s+ + +            ++++  + + li+lDgTW+qa+k+ ++ ++  +   ++ l + a+ +       +lr+ p+ ++ +sT+Ea   l  +l ++  +v  + l++++++++ 
  MMETSP0890-20130614|4959_1  65 GRCRRCWLEKSLCVCDTVQPLALApciRRIFVIMHHKEIALTVDTAKLIFAAFPDRAlvIVNGLRHQPAEE-EMHKSIAKGEAIVLFPSDDSVLADQS----------VFQDSVHESKDLIILDGTWSQAQKLHRSLPATaT---RIRLSDTAINHLakgfgkQLRPHPTkWKEVSTLEALRLLFVDLDIA--GVDPNILAHYQSVANA 257
                 58****************66655423269********************6666655401455566655555.6778888999*********9988776..........699999*********************8888741...34444433333322223358888762568***********999997..7788999999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.59
# Mc/sec: 1157.56
//
Query:       MMETSP0890-20130614|4958_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-28   99.1  11.0    8.9e-23   80.9   6.8    2.4  3  PF13848.1  Thioredoxin-like domain
      2e-24   85.1   0.0    6.6e-24   83.4   0.0    1.9  2  PF00085.15 Thioredoxin
    1.1e-06   28.7   1.2    0.00012   22.0   0.1    3.3  2  PF13098.1  Thioredoxin-like domain
    1.3e-05   25.1   0.5      0.004   17.1   0.0    3.2  3  PF13905.1  Thioredoxin-like
    4.5e-05   23.2   0.0    0.00011   22.0   0.0    1.7  1  PF13899.1  Thioredoxin-like
    0.00016   21.2   0.1      0.049   13.1   0.0    2.6  2  PF00578.16 AhpC/TSA family
     0.0077   15.6   1.5      0.025   14.0   0.0    2.4  3  PF08534.5  Redoxin


Domain annotation for each model (and alignments):
>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   6.8   4.5e-26   8.9e-23       6     184 .]     109     301 ..     103     301 .. 0.88
   2 ?   -3.2   0.0       2.9   5.6e+03      79      94 ..     341     356 ..     339     364 .. 0.72
   3 !   17.0   0.0   1.8e-06    0.0034       8      75 ..     373     443 ..     369     450 .. 0.81

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 4.5e-26
                 STHHHHHHHHHHH--.--B------HHHHHHTT---.--EEEEET........TTTEEEEE-HH.T--HHHHHHHHHHH--XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1   6 delkeiFekaakelkgdvtfgvtsekevakklgike.pkvllfrk........fdekrvkydge.kltvddlkkfieknslplvgeltpenaeelfesglppllllf...lnkdseeteklknriekvakkfkgkinfatvdadsfkrlleylglsss.dlPvivivdsksdkkkffpedefsveslkeFlkk 184
                 +++ + F+  a++++ d++f++t+++ v +k+++++ p v++f +        +d+ ++ ++ +  +++++l+kf++k+slplvge t ++ + + ++ +p+l l+    l k++++ e++ nr++kva ++k+ i f ++++d+f+++l++++  +  +  + v v  ++d k++ ++ +f+v++l++F+ +
  MMETSP0890-20130614|4958_1 109 EDALDVFKDTAEQNRYDFKFAYTTNDQVKQKYKYNKaPVVTVFLPkrfvsekyGDKTKARFPSAkLTSAESLAKFLYKKSLPLVGEKTWKSNQRYEKQAKPILTLYAsidLEKNPKGFEYFANRLRKVAIDHKDTILFNIANKDDFSYILDDYDFENKlEGKKTVGVGINDDDKYYKMTTSFNVDNLRAFVAD 301
                 57899**************************************543466666778888888888767**********************9999998888887777768888999***************************************999944666666677778888999*************975 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.9
                 XXXXXXXXXXXXXXXX CS
   PF13848.1  79 vgeltpenaeelfesg 94 
                 v+ lt+en++ +++ +
  MMETSP0890-20130614|4958_1 341 VISLTSENFDHVTSGK 356
                 8899999999986544 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHH--.--B------HHHHHH.....TT-----EEEEETTTTEEEEE-HHT--HHHHHHHHHHH- CS
   PF13848.1   8 lkeiFekaakelkgdvtfgvtsekevakk.....lgikepkvllfrkfdekrvkydgekltvddlkkfiekns 75 
                 lk +++k akel  d + +v+   +++++     ++++    ++f+++d k+ +ydg+  +  ++ +f++k+ 
  MMETSP0890-20130614|4958_1 373 LKPTYKKLAKELA-DTDGVVVAAMDATAHtppsdFDVSGYPTIFFKPKDGKPMPYDGD-RDLSSMLDFVKKHG 443
                 6789********9.65555555555555555699*****77778*************9.9***********97 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   2.7e+03      58      93 ..     130     165 ..     115     171 .. 0.70
   2 !   83.4   0.0   3.4e-27   6.6e-24       2     104 .]     341     442 ..     340     442 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.4
                 TTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.- CS
  PF00085.15  58 vdenkdlaseygvegiPtlklfkngkkveevegare 93 
                  ++n+++ ++y+ +  P + +f   + v+e  g ++
  MMETSP0890-20130614|4958_1 130 YTTNDQVKQKYKYNKAPVVTVFLPKRFVSEKYGDKT 165
                 567778888888888888877776666665555545 PP

  == domain 2    score: 83.4 bits;  conditional E-value: 3.4e-27
                 EEESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-..TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHHHH CS
  PF00085.15   2 vlvltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelke..kvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflkke 104
                 v++lt+enf+++ +   k+ ++efyApwCGhC++l+P+y+kla+el++   vv+a +d++++ + +s+++v+g+Pt+ + ++++k   ++g r+ +++ +f+kk+
  MMETSP0890-20130614|4958_1 341 VISLTSENFDHVTSG--KDAFLEFYAPWCGHCQSLKPTYKKLAKELADtdGVVVAAMDATAH-TPPSDFDVSGYPTIFFKPKDGKPMPYDGDRDLSSMLDFVKKH 442
                 77899****988777..99*****************************999*********88.799************************************987 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1       0.1     2e+02      27      89 ..      80     151 ..      77     171 .. 0.66
   2 !   22.0   0.1   6.3e-08   0.00012       5      96 ..     355     424 ..     352     439 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.1
   PF13098.1  27 lkklndvtkylkd.kfeviyvnidkskerseavld......kdge.....kevkleekelgrklgvrgtPtivfl 89 
                 l+ l+dvt+yl++ + e++ + + +++  +e++ld      +  +     k+  +++++  +k++ +  P + ++
  MMETSP0890-20130614|4958_1  80 LDTLEDVTSYLEQgETEAVVLGFFDEE-GTEDALDvfkdtaE--QnrydfKFAYTTNDQVKQKYKYNKAPVVTVF 151
                 566778888885524666666666433.44443343333331..2445778888899999999999999987665 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 6.3e-08
   PF13098.1   5 gkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldgeGklv 96 
                 gk  ++ f +p+C+ C+ l+++ kk   ++k+l+d+  v+ +++d                    + +     ++v+g Pti+f +++Gk++
  MMETSP0890-20130614|4958_1 355 GKDAFLEFYAPWCGHCQSLKPTYKK---LAKELADTDGVVVAAMDA-------------------TAHTPPSDFDVSGYPTIFFKPKDGKPM 424
                 899999*****************96...888888766666666662...................33578999****************976 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.016        31      50      90 ..     110     151 ..      74     157 .. 0.72
   2 ?   -1.4   0.1       1.2   2.4e+03      28      28 ..     265     265 ..     195     300 .. 0.62
   3 !   17.1   0.0     2e-06     0.004       5      57 ..     359     441 ..     355     447 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.016
   PF13905.1  50 efkkylkkn.kkpwlavpfndkrrnklkklykvkaiPtlvvl 90 
                 +  +++k++ +++ + + f   +++++k++yk ++ P + v 
  MMETSP0890-20130614|4958_1 110 DALDVFKDTaEQNRYDFKFAYTTNDQVKQKYKYNKAPVVTVF 151
                 444555555233588888999999***********9988775 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
   PF13905.1  28 e 28 
                 +
  MMETSP0890-20130614|4958_1 265 N 265
                 1 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 2e-06
   PF13905.1   5 llyfaaswcppckaftpelkelyeklkaskdkveivyVsl...............................drdeeefkkylkk 57 
                 +l f+a+wc++c++  p+ k+l ++l  ++d+v++ +  +                               drd +++ +++kk
  MMETSP0890-20130614|4958_1 359 FLEFYAPWCGHCQSLKPTYKKLAKELA-DTDGVVVAAMDAtahtppsdfdvsgyptiffkpkdgkpmpydgDRDLSSMLDFVKK 441
                 699***********************8.58888877666666666666666666666666666666666555666666666655 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.7e-08   0.00011      16      79 ..     354     416 ..     350     419 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 5.7e-08
   PF13899.1  16 egkpllvifgadwcpdCqaldrdvlsdeevkaala.ekfvllrvdvterdanleldrqgvPvvvf 79 
                 +gk  ++ f+a wc++Cq l+ +   ++  k++ + +++v+  +d t   +  ++d  g+P+++f
  MMETSP0890-20130614|4958_1 354 SGKDAFLEFYAPWCGHCQSLKPTY--KKLAKELADtDGVVVAAMDATAHTPPSDFDVSGYPTIFF 416
                 79*********************7..667888777799999999999999999**********99 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0067        13      68     111 ..     110     154 ..      73     163 .. 0.79
   2 !   13.1   0.0   2.5e-05     0.049      24      65 ..     354     394 ..     339     438 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0067
  PF00578.16  68 dspeshkkfaeknelnfpllsDeegevakaygvlnee.kglalra 111
                 d  +  k++ae+n+++f++++ ++ +v ++y+  + +  ++ l++
  MMETSP0890-20130614|4958_1 110 DALDVFKDTAEQNRYDFKFAYTTNDQVKQKYKYNKAPvVTVFLPK 154
                 455689999**********************99955444444444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.5e-05
  PF00578.16  24 kgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigv 65 
                 +gk + L fy+  +c +C+   p +++l++e+++ +  v++ 
  MMETSP0890-20130614|4958_1 354 SGKDAFLEFYAP-WCGHCQSLKPTYKKLAKELADTDGVVVAA 394
                 8999********.********************986666654 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.72   1.4e+03      82     104 ..     121     143 ..     108     158 .. 0.54
   2 ?   -1.4   0.0       0.7   1.4e+03      59      87 ..     266     294 ..     258     337 .. 0.71
   3 !   14.0   0.0   1.3e-05     0.025      26      72 ..     353     399 ..     331     448 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.72
                 HTT.TSEEE------HHHHHT.. CS
   PF08534.5  82 keglkipvlsDesasfakalglr 104
                 ++  ++++++ ++ ++ ++++ +
  MMETSP0890-20130614|4958_1 121 QNRYDFKFAYTTNDQVKQKYKYN 143
                 44555566666666666665522 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.7
                 HH----EEEEE-SS-HHHHHHHHHTT.TS CS
   PF08534.5  59 kekgvdvvavvaqndafvkeawakeglki 87 
                 k +g + v+v +++d+  +++ ++ ++++
  MMETSP0890-20130614|4958_1 266 KLEGKKTVGVGINDDDKYYKMTTSFNVDN 294
                 55666788888888888666666644444 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.3e-05
                 HTTSEEEEE---------IIIIIHHHHTHHHH..HH----EEEEE-SS CS
   PF08534.5  26 fkgkkvvlvfvpgafcptCsaehpyleklakl.akekgvdvvavvaqn 72 
                 + gk ++l f++  +c+ C+   p  +klak+ a   gv v a+ a  
  MMETSP0890-20130614|4958_1 353 TSGKDAFLEFYAP-WCGHCQSLKPTYKKLAKElADTDGVVVAAMDATA 399
                 789**********.*******999777775550444454444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.86
# Mc/sec: 1256.69
//
Query:       MMETSP0890-20130614|4957_1  [L=1732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.7e-183  599.7  34.4    5.4e-31  106.9   3.3    8.2  8  PF00637.15 Region in Clathrin and VPS
    1.3e-25   88.9   0.1    1.3e-25   88.9   0.0    2.8  3  PF13838.1  Clathrin-H-link
    2.6e-15   55.4   1.7    0.00072   19.5   0.0    6.5  7  PF01394.15 Clathrin propeller repeat
    0.00045   19.0   0.3        1.4    7.5   0.0    3.3  4  PF04053.9  Coatomer WD associated region
     0.0057   16.1   6.2       0.79    9.3   0.9    4.5  4  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.27   10.9   7.9        2.7    7.8   0.1    5.6  5  PF13181.1  Tetratricopeptide repeat
        1.3    8.9   8.8        7.2    6.5   0.3    5.1  6  PF13424.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.016        31      74     139 ..     467     531 ..     422     534 .. 0.86
   2 !   81.7   0.1   1.7e-26   3.2e-23       4     139 ..     544     684 ..     542     688 .. 0.95
   3 !   60.7   0.1   5.1e-20     1e-16       3     142 ..     697     835 ..     695     836 .. 0.94
   4 !   84.5   0.0   2.3e-27   4.5e-24       1     135 [.     842     974 ..     842     980 .. 0.97
   5 !   85.6   0.3     1e-27     2e-24       1     139 [.     995    1148 ..     995    1151 .. 0.94
   6 !   95.2   0.2   1.2e-30   2.3e-27       2     142 ..    1158    1296 ..    1157    1297 .. 0.96
   7 !   98.0   0.3   1.5e-31     3e-28       3     141 ..    1305    1445 ..    1303    1447 .. 0.95
   8 !  106.9   3.3   2.8e-34   5.4e-31       1     142 [.    1451    1592 ..    1451    1593 .. 0.97

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.016
                 THHHHHHHT-SSHHHHHHHH----THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHHHHHH- CS
  PF00637.15  74 ekvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyakkasdpelwekllealldnk 139
                 e++++l ++ad   +a+ +y + n  +kai+++ + ++fd+ + ya k+     ++++l+ l+ ++
  MMETSP0890-20130614|4957_1 467 EQLGDLVMQADVS-MALSVYLRANVPEKAINCMLQRGEFDKIAAYATKVGYRCDYSFMLNTLVRQN 531
                 5678888888888.9999**************8888**********99987666666666666655 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 1.7e-26
                 H-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHH----THHHHSS.-SSTT--TTGGG..TTTTT---TTHHHHHHHHHHHH- CS
  PF00637.15   4 ltdpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflk..knnnydlekvaklcekadlyeeavilykkinefkkais.llkklkdfddai..eyakkasdpelwekllealldnk 139
                 + + id ++vv++f+ a++++e + +L ++lk +++e+  +qt+lle++++ + p++++++l+  ++++yd++ vak+ce a+l ++a+++y++++++k+++  ++++ ++ ++++   y++ +s +  +e+l e l  n+
  MMETSP0890-20130614|4957_1 544 SGNLIDPNQVVEIFMGANRIQETTAFLLEALKDNKPEEGYLQTKLLEINLRGGSPQVADAILQnnMFTHYDRQYVAKMCEAAGLAQRALEHYTDVEDIKRSLLaMCQNQHNVNPEFvlSYFGSLSPEASLECLKELLSRNM 684
                 57899**********************************************************99999***********************************66999999999999***************998887666 PP

  == domain 3    score: 60.7 bits;  conditional E-value: 5.1e-20
                 HH-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHH--..--THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHHHHHH-STT CS
  PF00637.15   3 eltdpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnnydlekvaklcekadlyeeavilykk..inefkkaisllkklkdfddaieyakkasdpelwekllealldnkkfe 142
                 +++++i  + +++lfe+++ +e l++yL ++++  s ++p v+++++e++ak ++++++e++++ ++ y +  v +++++a+l + +++++++  +++++++++ + + +++ + ie++ +  +p+  + +++ lld +++e
  MMETSP0890-20130614|4957_1 697 KYNEQIGSQPLIDLFESFKGYEALYYYLGQIVNF-S-QEPLVHFKYIEAAAKCQQFKEVERVCRDSTVYEPIAVKDFLMEAKLPDPRPLIHVCdrHGFVEEMTQ-YLYSSNLTKYIEVYCNKVSPQQTPVVVGKLLDLDCNE 835
                 5678888999**********************43.4.55**************************************************999999******999.9999***************************999987 PP

  == domain 4    score: 84.5 bits;  conditional E-value: 2.3e-27
                 HHHH-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHH--..--THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHHH CS
  PF00637.15   1 lneltdpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnnydlekvaklcekadlyeeavilykk..inefkkaisllkklkdfddaieyakkasdpelweklleal 135
                 ln++ ++++++e+v ++e++++l++l ++Le+++++++ e +  ++a+ ++y++ ++  ++ +fl++ ++yd++ ++k+cek d+  +a+++yk+   ++++++i +++++++f+d ++y+++++d elw+ +l+a+
  MMETSP0890-20130614|4957_1 842 LNSVGHACPVEELVVQVEHRNRLRLLQPWLEARIATGNTE-MGTHNAIGKIYVTLNR--DPVSFLTNDQYYDPKVLGKYCEKLDPS-LAFLAYKRanGECDDDLIRVTRENGLFKDLARYLVERQDLELWATVLQAS 974
                 7899******************************999888.***************9..***************************.********9999***********************************987 PP

  == domain 5    score: 85.6 bits;  conditional E-value: 1e-27
                  HHHH-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S..--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHH..HT-SSHHHHHHHH--....--THHHHSS.......-.SSTT--TTGGGTTTTT---TTHHHHHHHHHHHH- CS
  PF00637.15    1 lneltdpidlsevvklfekaglleelieyLekvlketsr..enpavqtallelyakyedpekleeflkknnnydlekvaklc..ekadlyeeavilykk....inefkkais.......l.lkklkdfddaieyakkasdpelwekllealldnk 139 
                  l+e +dp+++s +vk+f+ a+l++elie+Le +++++s   en+++q++l+ +++k ++ e+++e++++++n+d +++ak++   +++lyee +i+y+k     +++++a++       + ++  +++++a e+a +++   +w++l++a+ld++
  MMETSP0890-20130614|4957_1  995 LPETKDPDHVSTTVKAFMAADLPQELIELLERIVLHGSDfsENKNLQNLLILTAIKADK-ERVMEYINRLDNFDGPEIAKIAisDQYELYEEGFIIYNKfakqTKDIEEATKlnvcavgVlVDMIQSLERASEFAERVNVAPVWSRLAKAQLDEG 1148
                  6899******************************9998889*****************8.********************99556788***********88888899999999999999669******************************986 PP

  == domain 6    score: 95.2 bits;  conditional E-value: 1.2e-30
                  HHH-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHH----THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHHHHHH-STT CS
  PF00637.15    2 neltdpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyakkasdpelwekllealldnkkfe 142 
                  +++ dp ++ ev++++e+a+++e li++L + +k+   ++p+++t l++ yak++++ +leef+   n   ++ ++++c +++++ +a+il+  in+++k++ ++ +l+++++a+++a+ka++  +w+++ +a+++  +f+
  MMETSP0890-20130614|4957_1 1158 IKAGDPTSYREVIEAAERADSYEALIPFLVMSRKQI--KEPHLDTMLIYSYAKSDKLGDLEEFIAAPNVASIQNIGERCFDEGMFSAAKILFASINNNAKLALCYVNLEQYREAVDAAQKANSVSTWKEINKACVKASEFR 1296
                  68899****************************543..66***********************************************************************************************998876 PP

  == domain 7    score: 98.0 bits;  conditional E-value: 1.5e-31
                  HH-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHH----THHHHSS-.SSTT--TTGGG..TTTTT---TTHHHHHHHHHHHH-ST CS
  PF00637.15    3 eltdpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnn.ydlekvaklcekadlyeeavilykkinefkkaisl.lkklkdfddai..eyakkasdpelwekllealldnkkf 141 
                   + +p++l+e+++l+e++g++ eli+++e++l + + +++ ++t+l  ly ky   ekl+e++k +++ ++++k+ + ceka l++eav+l+k  ++++ a+++ + +  +f++++  + ++k++++e+++k + +++++++ 
  MMETSP0890-20130614|4957_1 1305 IIIHPDHLEELISLYENEGQPMELIQLMEQGL-GLDGAHSGIFTELGVLYSKYLH-EKLMEHIKIFWSrMNTPKLMRACEKALLWDEAVFLLKEDEQYDSAVKTmIAHATAFQHDLflDCVQKVRNTEVYYKSIAFYIEQQPL 1445
                  6789****************************.8899*****************5.********99999**********************************559999******************************9985 PP

  == domain 8    score: 106.9 bits;  conditional E-value: 2.8e-34
                  HHHH-TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHHHT-SSHHHHHH...HH----THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHHHHHH-STT CS
  PF00637.15    1 lneltdpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnnydlekvaklcekadlyeeavi...lykkinefkkaisllkklkdfddaieyakkasdpelwekllealldnkkfe 142 
                  l++lt+ +d+s+vv++++k ++l++ ++yL++v+   + + +av++a++e+y+++ed+++l+++++ ++n+d+  +a++ ek++l e+++i   lykk+++++k+i l+k +k+++daie+a+++ dp l+e++l ++ d   +e
  MMETSP0890-20130614|4957_1 1451 LQVLTPNLDHSRVVHQLRKLENLPLALPYLKSVQ---KSNLSAVNEAINEMYVEDEDYDSLRQSIDDHDNFDQIALAQKVEKHELLEFRRIatyLYKKNKRYQKSIALSKADKSYKDAIETAAESGDPALAEEMLRFFCDVCDKE 1592
                  68899*****************************...7889*************************************************************************************************9976665 PP

>> PF13838.1  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   6.7e-29   1.3e-25       1      66 []     362     427 ..     362     427 .. 0.99
   2 ?   -3.1   0.1       3.4   6.6e+03      17      32 ..    1261    1276 ..    1260    1278 .. 0.80
   3 ?   -1.7   0.0       1.3   2.5e+03      20      32 ..    1560    1572 ..    1556    1577 .. 0.84

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 6.7e-29
   PF13838.1   1 glpgaddlyiqqFnellaqgqyeeAAkvAansprgiLRtpetiqrFkqvpaqpgqpspllqYFgal 66 
                 +lpgad+ly  +F++ll+ g++  AAk+Aansp+g LRt+etiqrF+ +p qpgqp+p++qYF +l
  MMETSP0890-20130614|4957_1 362 NLPGADNLYEAEFQRLLSVGDVPGAAKLAANSPQGLLRTAETIQRFQGIPGQPGQPQPVFQYFHML 427
                 89*************************************************************997 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.4
   PF13838.1   17 laqgqyeeAAkvAans 32  
                  ++ +qy+eA+  A ++
  MMETSP0890-20130614|4957_1 1261 VNLEQYREAVDAAQKA 1276
                  6789*****9998765 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.3
   PF13838.1   20 gqyeeAAkvAans 32  
                  + y++A++ Aa+s
  MMETSP0890-20130614|4957_1 1560 KSYKDAIETAAES 1572
                  78*********98 PP

>> PF01394.15  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.068   1.3e+02       7      37 .]      26      57 ..      20      57 .. 0.83
   2 !    9.8   0.0   0.00046      0.91       6      37 .]      66      95 ..      65      95 .. 0.95
   3 ?   -1.1   0.0       1.4   2.7e+03      23      37 .]     120     134 ..     110     134 .. 0.74
   4 !   19.5   0.0   3.7e-07   0.00072       4      37 .]     153     190 ..     152     190 .. 0.97
   5 !   10.8   0.0   0.00023      0.44       5      36 ..     261     292 ..     260     293 .. 0.95
   6 ?    4.4   0.0     0.025        49       2      31 ..     302     330 ..     301     333 .. 0.86
   7 ?   -3.0   0.0       5.8   1.1e+04       5      20 ..    1603    1618 ..    1603    1620 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.068
  PF01394.15  7 infptatmeswlfiiain..gttkgqvqlvsve 37
                i+f ++ mes++fi +    g    qv+++++e
  MMETSP0890-20130614|4957_1 26 IKFGSCSMESDKFITVCDssG-DSPQVYVIDLE 57
                88999*********9988876.66889999887 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00046
  PF01394.15  6 iinfptatmeswlfiiaingttkgqvqlvsve 37
                +i++++a+m++   ++a++   + q+q++++e
  MMETSP0890-20130614|4957_1 66 PISAEAAIMNPVSKVLALR--AGSQLQIFNLE 95
                7999***************..*********98 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.4
  PF01394.15  23 ingttkgqvqlvsve 37 
                 i+++t  +v+++s+e
  MMETSP0890-20130614|4957_1 120 IALVTPQSVFHWSIE 134
                 45557789*****98 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 3.7e-07
  PF01394.15   4 fqiinfptatmeswlfiiain....gttkgqvqlvsve 37 
                 +qiin+ ++++e+w+ + +i+    g ++g +ql+s+e
  MMETSP0890-20130614|4957_1 153 TQIINYQVSADEKWCLLMGIAqgqgGIIQGTMQLYSIE 190
                 89***********************99*********98 PP

  == domain 5    score: 10.8 bits;  conditional E-value: 0.00023
  PF01394.15   5 qiinfptatmeswlfiiaingttkgqvqlvsv 36 
                 ++++fp+++ +s+++ i+  +t+ g+++l+++
  MMETSP0890-20130614|4957_1 261 APNDFPVSMIPSPKHDIVFMITKMGYLYLFDI 292
                 589****************************9 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.025
  PF01394.15   2 anfqiinfptatmeswlfiiaingttkgqv 31 
                 +++++++f t+++ s+ + ++i  ++kgqv
  MMETSP0890-20130614|4957_1 302 RITNDTVFVTCIQSSTGGMLGIT-ARKGQV 330
                 7899**************99998.677776 PP

  == domain 7    score: -3.0 bits;  conditional E-value: 5.8
  PF01394.15    5 qiinfptatmeswlfi 20  
                  q i++++a++  w+ +
  MMETSP0890-20130614|4957_1 1603 QEIKPDVAIELAWRNN 1618
                  6899999999999875 PP

>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.5   4.8e+03     128     176 ..      51      98 ..      48     110 .. 0.82
   2 ?   -2.1   0.0      0.55   1.1e+03     119     152 ..     278     310 ..     265     328 .. 0.85
   3 !    7.5   0.0    0.0007       1.4     332     375 ..    1119    1162 ..    1117    1166 .. 0.93
   4 !    7.1   0.1   0.00092       1.8     327     397 ..    1256    1333 ..    1250    1338 .. 0.72

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2.5
   PF04053.9 128 isfYDweqkklvrridvkkvknViwsddgelvalvskdtvyilsynlea 176
                 +++ D+e +++v +  +++ +  i+++  +++al + +++ i + +l a
  MMETSP0890-20130614|4957_1  51 VYVIDLEAGNTVTKRPISA-EAAIMNPVSKVLALRAGSQLQIFNLELRA 98 
                 6778999999999999999.99999999999999998888888877764 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.55
   PF04053.9 119 lLgvksesfisfYDweqkklvrridvkkvknViw 152
                 ++++++ + ++++D+ ++k + r ++++ ++V++
  MMETSP0890-20130614|4957_1 278 VFMITKMGYLYLFDIFSGKALYRARITN-DTVFV 310
                 778899999***************9998.77765 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0007
   PF04053.9  332 gnLevAlelakeldseekWkkLgdaAlsqgniklaeeayqkakd 375 
                  + Le A e a++ +   +W++L++a l +g ++ a  +y ka+d
  MMETSP0890-20130614|4957_1 1119 QSLERASEFAERVNVAPVWSRLAKAQLDEGLMTAAIASYIKAGD 1162
                  689**************************************998 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.00092
   PF04053.9  327 LAlelgnLev...AlelakeldseekWkkLgdaAlsqgniklaeeayqka....kdfdkLllLylstgnkekLkkLak 397 
                  LAl + nLe+   A+++a++ +s ++Wk++ +a ++  +++la  a  ++     ++++L  Ly   g+  +L +L++
  MMETSP0890-20130614|4957_1 1256 LALCYVNLEQyreAVDAAQKANSVSTWKEINKACVKASEFRLARTAGLHIiihpDHLEELISLYENEGQPMELIQLME 1333
                  66666666543339*****************************98744331111566666666666666666666665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0063        12       1      27 [.    1134    1160 ..    1134    1160 .. 0.95
   2 !    9.3   0.9    0.0004      0.79       7      27 ..    1256    1276 ..    1254    1276 .. 0.95
   3 ?   -4.0   0.0       6.1   1.2e+04      12      25 ..    1468    1481 ..    1467    1483 .. 0.86
   4 ?   -0.5   0.3       0.5   9.9e+02      10      22 ..    1542    1554 ..    1541    1555 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0063
                  HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23    1 akalynlGnaylklgkydeAleyyekA 27  
                  a ++ +l+ a+l  g    A++ y kA
  MMETSP0890-20130614|4957_1 1134 APVWSRLAKAQLDEGLMTAAIASYIKA 1160
                  679*********************998 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0004
                  HHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23    7 lGnaylklgkydeAleyyekA 27  
                  l+++y +l++y eA+++ +kA
  MMETSP0890-20130614|4957_1 1256 LALCYVNLEQYREAVDAAQKA 1276
                  89*****************98 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 6.1
                  HHTT-HHHHHHHHH CS
  PF00515.23   12 lklgkydeAleyye 25  
                  +kl+++  Al y +
  MMETSP0890-20130614|4957_1 1468 RKLENLPLALPYLK 1481
                  7999******9986 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.5
                  HHHHTT-HHHHHH CS
  PF00515.23   10 aylklgkydeAle 22  
                  +y k+++y++ ++
  MMETSP0890-20130614|4957_1 1542 LYKKNKRYQKSIA 1554
                  7********9885 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   4.2e+03       4      15 ..     885     896 ..     883     897 .. 0.83
   2 ?    1.1   0.0      0.19   3.8e+02       2      27 ..    1135    1160 ..    1134    1160 .. 0.92
   3 ?    7.8   0.1    0.0014       2.7       6      30 ..    1255    1279 ..    1250    1283 .. 0.90
   4 ?   -1.9   0.0       1.7   3.3e+03      12      30 ..    1468    1486 ..    1467    1487 .. 0.86
   5 ?   -0.6   1.0      0.66   1.3e+03      10      29 ..    1542    1567 ..    1541    1570 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.2
                 TTT---HHHHTT CS
   PF13181.1   4 yynlGdiYrqlG 15 
                 ++++G+iY  l+
  MMETSP0890-20130614|4957_1 885 HNAIGKIYVTLN 896
                 789*****9887 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.19
                  --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1    2 kayynlGdiYrqlGdydkAkeyleka 27  
                  +++ +l+++ ++ G + +A++++ ka
  MMETSP0890-20130614|4957_1 1135 PVWSRLAKAQLDEGLMTAAIASYIKA 1160
                  68999******************987 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0014
                  T---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1    6 nlGdiYrqlGdydkAkeylekalel 30  
                   l+++Y +l +y +A  + +ka++ 
  MMETSP0890-20130614|4957_1 1255 KLALCYVNLEQYREAVDAAQKANSV 1279
                  589*******************986 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.7
                  HHTT-HHHHHHHHH---HH CS
   PF13181.1   12 rqlGdydkAkeylekalel 30  
                  r+l +  +A+ yl+ + + 
  MMETSP0890-20130614|4957_1 1468 RKLENLPLALPYLKSVQKS 1486
                  789999********99875 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 0.66
                  HHHHTT-HHH......HHHHHH---H CS
   PF13181.1   10 iYrqlGdydk......Akeylekale 29  
                  +Y+++++y k      A ++++ a+e
  MMETSP0890-20130614|4957_1 1542 LYKKNKRYQKsialskADKSYKDAIE 1567
                  79999999775555558888887776 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.094   1.8e+02      10      37 ..     617     644 ..     609     651 .. 0.74
   2 ?    0.3   0.0       0.3   5.9e+02       3      31 ..    1132    1160 ..    1118    1162 .. 0.72
   3 ?   -2.0   0.0       1.6   3.1e+03       2      28 ..    1222    1247 ..    1221    1255 .. 0.83
   4 ?    6.5   0.3    0.0037       7.2      52      73 ..    1256    1277 ..    1253    1281 .. 0.86
   5 ?   -4.1   0.0         7   1.4e+04      15      29 ..    1467    1481 ..    1464    1488 .. 0.65
   6 ?   -1.8   0.0       1.4   2.6e+03      15      27 ..    1543    1555 ..    1535    1576 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.094
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellre 37 
                 + a ++++ g  ++Ale+y  + ++ r+
  MMETSP0890-20130614|4957_1 617 YVAKMCEAAGLAQRALEHYTDVEDIKRS 644
                 5567777777778888888777777444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.3
   PF13424.1    3 dlatilnnlalvlrrlgdydeAlelyeka 31  
                  ++a ++++la + + +g    A++ y ka
  MMETSP0890-20130614|4957_1 1132 NVAPVWSRLAKAQLDEGLMTAAIASYIKA 1160
                  45667777777777777777777777776 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.6
   PF13424.1    2 pdlatilnnlalvlrrlgdydeAlely 28  
                  p++a+i  n+++ ++ +g++  A  l+
  MMETSP0890-20130614|4957_1 1222 PNVASIQ-NIGERCFDEGMFSAAKILF 1247
                  6788887.9***999**9999997666 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0037
   PF13424.1   52 lanlylalgdydeAleylekAl 73  
                  la +y+ l++y eA++  +kA 
  MMETSP0890-20130614|4957_1 1256 LALCYVNLEQYREAVDAAQKAN 1277
                  8999999999999999999996 PP

  == domain 5    score: -4.1 bits;  conditional E-value: 7
   PF13424.1   15 lrrlgdydeAlelye 29  
                  lr+l+++  Al +++
  MMETSP0890-20130614|4957_1 1467 LRKLENLPLALPYLK 1481
                  456666666666665 PP

  == domain 6    score: -1.8 bits;  conditional E-value: 1.4
   PF13424.1   15 lrrlgdydeAlel 27  
                  +++ ++y+++++l
  MMETSP0890-20130614|4957_1 1543 YKKNKRYQKSIAL 1555
                  3355555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1732 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.15u 0.34s 00:00:02.48 Elapsed: 00:00:01.56
# Mc/sec: 2660.57
//
Query:       MMETSP0890-20130614|4962_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.75
# Mc/sec: 875.47
//
Query:       MMETSP0890-20130614|4960_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-35  120.1  16.7    4.2e-11   42.1   0.3    4.3  4  PF00400.27 WD domain, G-beta repeat
    2.9e-06   26.9   0.5      0.065   12.8   0.0    3.5  3  PF08662.6  Eukaryotic translation initiation factor eIF2A
     0.0031   17.0   0.0         17    5.1   0.0    4.0  4  PF07676.7  WD40-like Beta Propeller Repeat
     0.0059   14.8   0.0      0.011   13.8   0.0    1.5  1  PF02239.11 Cytochrome D1 heme domain
     0.0074   15.8   6.4       0.91    9.1   0.1    4.2  5  PF10313.4  Uncharacterised protein domain (DUF2415)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.4   5.6e-14   1.5e-10       3      39 .]      69     105 ..      67     105 .. 0.96
   2 !   14.2   0.0     1e-05     0.027      13      37 ..     119     144 ..     109     146 .. 0.80
   3 !   33.1   0.5     1e-11   2.9e-08       9      38 ..     157     186 ..     152     187 .. 0.95
   4 !   42.1   0.3   1.5e-14   4.2e-11       9      39 .]     198     228 ..     192     228 .. 0.95

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 5.6e-14
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 +++tl+gHt+ ++c++fs dg+++++ S+D t ++Wd
  MMETSP0890-20130614|4960_1  69 VIQTLKGHTDCIRCCKFSRDGRRVVTISEDDTAKIWD 105
                 789*********************************9 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1e-05
                 SEEEEEEESSSTEEEEEE.TTSEEEE CS
  PF00400.27  13 pVtcvafspdgpllasgS.rDgtirl 37 
                 + +++ fspdg+ll+++S  D t r+
  MMETSP0890-20130614|4960_1 119 WARACHFSPDGTLLITASsNDYTARV 144
                 789***************77777665 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 1e-11
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlW 38 
                  Ht+ V+++af+pd+++++++S D t r+W
  MMETSP0890-20130614|4960_1 157 NHTDIVWDCAFAPDSKRIVTASFDFTARVW 186
                 7***************************** PP

  == domain 4    score: 42.1 bits;  conditional E-value: 1.5e-14
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  H+++V+c++fs++g+++++g++D t r+W+
  MMETSP0890-20130614|4960_1 198 THQDFVNCCSFSHNGKYIVTGGDDDTARIWN 228
                 699***************************7 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0075        21     112     162 ..      49      96 ..      46     103 .. 0.77
   2 !   12.8   0.0   2.4e-05     0.065     128     164 ..     102     138 ..      97     157 .. 0.84
   3 !    6.2   0.1    0.0024       6.6      56     122 ..     156     222 ..     140     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0075
   PF08662.6 112 grlvllaGfgnlaGeleiydvkklkkiakae..asnatlvewspdgryvlTat 162
                 +r+++ +G+  +     i+d ++ + i++ +    +   +++s dgr v+T +
  MMETSP0890-20130614|4960_1  49 ERYIIASGLNAF-----IFDAETHQVIQTLKghTDCIRCCKFSRDGRRVVTIS 96 
                 567777777777.....89999999998876414455679**********986 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.4e-05
   PF08662.6 128 eiydvkklkkiakaeasnatlvewspdgryvlTatts 164
                 +i+d  + + + ++e  +a  +++spdg++++Ta++ 
  MMETSP0890-20130614|4960_1 102 KIWDSLTGTILFTFEGNWARACHFSPDGTLLITASSN 138
                 69********************************974 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0024
   PF08662.6  56 lkkegpihdvaWspkskefaviyGkmpakislfdlkvnvisklkekkrNtifwspqgrlvllaGfgn 122
                 l+++  + d a  p+sk+++    +  a++   +  v  ++ ++++  N+  +s +g++++++G  +
  MMETSP0890-20130614|4960_1 156 LNHTDIVWDCAFAPDSKRIVTASFDFTARVWCAETGVCELTLTHQDFVNCCSFSHNGKYIVTGGDDD 222
                 6666667788888888887777777777777777777788888888899999999999999998555 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.67   1.8e+03      16      24 ..      85      93 ..      82     105 .. 0.69
   2 ?    3.1   0.0     0.025        67      16      24 ..     125     133 ..     110     139 .. 0.83
   3 ?    3.5   0.0     0.019        53      12      24 ..     163     175 ..     149     179 .. 0.86
   4 !    5.1   0.0    0.0061        17      13      24 ..     205     216 ..     203     216 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.67
                E-----EEE CS
   PF07676.7 16 wSPDGkkiv 24
                +S DG++ v
  MMETSP0890-20130614|4960_1 85 FSRDGRRVV 93
                566777655 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.025
                 E-----EEE CS
   PF07676.7  16 wSPDGkkiv 24 
                 +SPDG+ ++
  MMETSP0890-20130614|4960_1 125 FSPDGTLLI 133
                 9****8765 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.019
                 EEEEE-----EEE CS
   PF07676.7  12 gePawSPDGkkiv 24 
                 +  a+ PD k+iv
  MMETSP0890-20130614|4960_1 163 WDCAFAPDSKRIV 175
                 5679********8 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0061
                 EEEE-----EEE CS
   PF07676.7  13 ePawSPDGkkiv 24 
                 + ++S +Gk+iv
  MMETSP0890-20130614|4960_1 205 CCSFSHNGKYIV 216
                 569*******98 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.2e-06     0.011      20      96 ..      61     136 ..      53     175 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.2e-06
                 EE-----SEEEEE-------EEEE---.--EEEEE---SEEEEEETTSSSEEEEEE---B----EE--TTT-EEE-- CS
  PF02239.11  20 lidgdskeilavlesgyalHisrvfasdgRyvyvigRDgkltliDLwakeivaevkaGlnarsvavSqedryvivgn 96 
                 + d+++++ +++l+++ +     +f++dgR v +i+ D + ++ D ++  i  +   G  ar    S +++++i+++
  MMETSP0890-20130614|4960_1  61 IFDAETHQVIQTLKGHTDCIRCCKFSRDGRRVVTISEDDTAKIWDSLTGTILFTF-EGNWARACHFSPDGTLLITAS 136
                 789******************************************9988877665.688899999999999888765 PP

>> PF10313.4  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.45   1.2e+03      37      42 ..      65      70 ..      61      71 .. 0.81
   2 !    9.1   0.1   0.00033      0.91       3      23 ..      80      98 ..      78     100 .. 0.81
   3 !    6.7   0.0    0.0019       5.1       4      18 ..     121     132 ..     120     136 .. 0.80
   4 ?   -1.9   0.0      0.94   2.6e+03       6      12 ..     165     171 ..     164     173 .. 0.82
   5 ?   -1.5   0.1       0.7   1.9e+03       5      11 ..     205     211 ..     203     213 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.45
   PF10313.4 37 dehqVi 42
                ++hqVi
  MMETSP0890-20130614|4960_1 65 ETHQVI 70
                79***9 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00033
   PF10313.4  3 fRvckFSpesglnDLLvisEh 23
                +R+ckFS  ++ +    isE+
  MMETSP0890-20130614|4960_1 80 IRCCKFS--RDGRRVVTISED 98
                8******..666788888887 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0019
   PF10313.4   4 RvckFSpesglnDLL 18 
                 R+c+FSp  +   LL
  MMETSP0890-20130614|4960_1 121 RACHFSPDGT---LL 132
                 9*****9887...44 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.94
   PF10313.4   6 ckFSpes 12 
                 c+F+p s
  MMETSP0890-20130614|4960_1 165 CAFAPDS 171
                 9***987 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.7
   PF10313.4   5 vckFSpe 11 
                 +c FS +
  MMETSP0890-20130614|4960_1 205 CCSFSHN 211
                 9****44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.88
# Mc/sec: 661.72
//
Query:       MMETSP0890-20130614|4964_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-88  296.5   0.1    2.8e-88  296.1   0.1    1.0  1  PF00171.17 Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.028   14.3   0.0       0.16   11.9   0.0    2.2  2  PF10387.4  Protein of unknown function (DUF2442)


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.1   0.1   4.1e-92   2.8e-88      13     456 ..      22     475 ..       9     479 .. 0.91

  Alignments for each domain:
  == domain 1    score: 296.1 bits;  conditional E-value: 4.1e-92
                 ETT..TEEEEEEEE---HHHHHHHHHHHHHHHH....HHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-C.CEEEEC....TTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHHTS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHH.HHTTT-EEEEE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--EE.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE-SBHH.HHHHHHHHS..----EEESS-TT--TTTS-B---TTTEE--BSSHHHHHHT CS
  PF00171.17  13 nPa..tgeviakvaaataedvdaavaaAkaafk....awaklpaeeRaeilrkaadlleerrdelaelevletGkplaearaevaeaidvlryyagaaekleg.evlpss....egkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleeaglPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiaka.aaknlkkvtlElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGeeekaglekgyfvePtvladvtpdmriaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavftedle.raervaerl..eaGnvwiNdsstgdaealpfgGvkqSglGreggkegleey 456
                 +    t+++i++ ++ +a+ + +a +aAk+a +    +w   ++++R + ++    +l err e++e++++e+ k++++a++e ++++ +++ +++ +++ ++ ++++++     +++a+v+r P+G++++++P+N+Pl+ +  +++pal++GN v+lK   + +l  +l +++l    lPkgv+n+vtg+g+e+  a+++   +d++ f+Gs++ +  + ka  + +  kv   l Gk+  iV++daDld +v++++ ga++++GQ+C+a++ +lVh++i+d++v +l++a ++l  G p de +++ Pl ++ + + + +++++a+++gak++      +  + +  +++P ++a +tpdmr+++eE FGP+++v kf++++++i++a ++  G + a+fte+ +  a ++++++   +G  +iN ++   ++ lpf G + S +G  +   +++++
  MMETSP0890-20130614|4964_1  22 DNKtgTRTIIGELSKMDADTAVEAAQAAKKAWDqgqgEWPLASLAKRISAIESYLSVLSERRTEIIETLMWEIAKNTNDATKEFDRTVAFAQAVIQSLRTENEiDIYAQEftqiGNVRAIVKRGPIGITLMVAPFNYPLNEMYAMMIPALLTGNIVILKLPATGALPHILAIDALMS-TLPKGVVNYVTGKGRETLPAIMSTGIIDALGFIGSSKGADALIKAhPHPHRLKVFSQLEGKNMGIVFPDADLDLTVKQLMLGALSYNGQRCTAIKLILVHDDIADALVSALANAIEALPRGLPWDEGVQITPLPDADKPAYLTELVQDAITKGAKIMNS----RGAQTQQSLFHPALVAYLTPDMRLFHEEQFGPLVAVAKFSSIDHVIQIAKNSWSGQQVAIFTESDApGASTLIDAFstIVGRANINLQCSRGPDVLPFSGRRSSAMGTMSVTSAVRAF 475
                 33355888999999999999999999999998888888************************************************************99777688777567889********************************************555555666555666655.6*******************************************954566799********************************************************************************************************82....356778899*****************************************************865527888888887679***************************98887777665 PP

>> PF10387.4  Protein of unknown function (DUF2442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05      0.16      33      77 ..     242     281 ..     234     283 .. 0.83
   2 ?   -1.3   0.0       0.3     2e+03      48      70 ..     310     330 ..     299     331 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.3e-05
                 T----TTTT......TS-B--------EETTTTEE---------- CS
   PF10387.4  33 lknatfeqlkdpalFatvelspggggihWpdldlDlspegLyega 77 
                  +++ + +l   ++F ++e  + + gi++pd+dlDl++  L+ ga
  MMETSP0890-20130614|4964_1 242 KAHPHPHRL---KVFSQLE--GKNMGIVFPDADLDLTVKQLMLGA 281
                 567788888...9999995..59****************998775 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.3
                 TS-B--------EETTTTEE--- CS
   PF10387.4  48 atvelspggggihWpdldlDlsp 70 
                 a++ +++  +g+ W++ +++++p
  MMETSP0890-20130614|4964_1 310 ANA-IEALPRGLPWDE-GVQITP 330
                 555.7778999****9.999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.92
# Mc/sec: 1333.62
//
Query:       MMETSP0890-20130614|4968_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-29  101.3   0.0      9e-29  100.6   0.0    1.3  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   6.6e-33     9e-29      59     181 .]       1     122 [.       1     122 [. 0.98

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 6.6e-33
  PF01728.14  59 maplqgvttlqgditdpstqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlilaalklalellkpggnfvlklfkgeeaeellkqlrkfFekvsvvkpkasrkesseeflvclgf 181
                 map+qg++++ gdit + t +++l++l   ++++dlvl Dgapd+ g +d+d  ++++l+ aal++a ++l+++++f++k+++ ++a++l+  l++fF ++ + kp++sr +s e+f+vc+gf
  MMETSP0890-20130614|4968_1   1 MAPIQGANIIVGDITAKDTVAQVLSMLG-PGNYADLVLFDGAPDIYGLSDIDDWLQCRLVYAALDMARQILANQACFIAKIYRERSANDLIHFLSQFFASIIIAKPRSSRAASVEAFIVCRGF 122
                 79***********************998.469*****************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.79
# Mc/sec: 822.04
//
Query:       MMETSP0890-20130614|4966_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        8.1    6.5  18.8       0.52   10.4   7.8    2.3  2  PF11595.3  Protein of unknown function (DUF3245)
        9.2    5.7  20.2       0.36   10.4   9.0    2.0  2  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.6      0.13   8.9e+02     106     141 ..     435     470 ..     416     478 .. 0.44
   2 ?   10.4   7.8   7.6e-05      0.52      69     138 ..     578     651 ..     571     665 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.13
   PF11595.3 106 rkaakvakeekekakevkddddddded..esRskavgk 141
                  ++ + ++e+++ a   +++ + dd++   s +k +gk
  MMETSP0890-20130614|4966_1 435 IQNENEEEEKNDDAF--EKNAQVDDNQylSSATKGAGK 470
                 222222222222222..222233332224666666665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 7.6e-05
   PF11595.3  69 eldsndklerqLlgKnykkvmaekekaeakk...pvaaskrkaakvakeekekakevkddddddded.esRska 138
                  l  + +le++L  +  k+   e+e+ ++kk   ++   +++ ++ ++ +k++ak+ +ddddddd+d +s + a
  MMETSP0890-20130614|4966_1 578 ILADEAELEQRLATRERKRKAREHEQEQQKKkssTFSFLSNSTSSTNNSTKTSAKAIEDDDDDDDDDdDSGARA 651
                 5667789999**99999988888777776661114556788888888889999999888888887775665544 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5      0.16   1.1e+03      67     118 ..     438     453 ..     416     473 .. 0.46
   2 ?   10.4   9.0   5.2e-05      0.36      88     165 ..     587     666 ..     561     669 .. 0.55

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.16
   PF04889.7  67 Eaaakakkekskkkralenakkeeeleaakeaeededeekeakrkkkleear 118
                 E                                    +e+e+k   + e+++
  MMETSP0890-20130614|4966_1 438 E------------------------------------NEEEEKNDDAFEKNA 453
                 1....................................111111111112222 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 5.2e-05
   PF04889.7  88 keeeleaakeaeededeekeakrkkk...leeareidaddsdkseeesdesdddsdddddeDetaeLlrELekiKkeraee 165
                 ++ +++++k +++++++e+++k++++   l++  ++ ++++ k + +  e+ddd+ddddd+    +L+    +iK  + e+
  MMETSP0890-20130614|4966_1 587 QRLATRERKRKAREHEQEQQKKKSSTfsfLSNSTSSTNNST-KTSAKAIEDDDDDDDDDDDSGARALQLTARRIKATKREN 666
                 22222223333333333333334433776566666666664.333344555555555566666788999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1116  (0.0816267); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:00.96
# Mc/sec: 1707.40
//
Query:       MMETSP0890-20130614|4973_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00055   19.7   0.0     0.0065   16.2   0.0    2.5  2  PF09949.4 Uncharacterized conserved protein (DUF2183)


Domain annotation for each model (and alignments):
>> PF09949.4  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.8e-07    0.0065      62      99 ..     183     220 ..     152     221 .. 0.91
   2 ?    0.3   0.0     0.043   5.8e+02      53      74 ..     292     313 ..     279     341 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.8e-07
   PF09949.4  62 fpekkfiliGDsgqkDpeiYaeiakefpgrikaiyiRk 99 
                  p++++i++GD+g+ D  + + + +++p+ ik +++ +
  MMETSP0890-20130614|4973_1 183 QPKREYIFVGDTGEMDRLAGEMMLSRYPNLIKYVFLHC 220
                 599*******************************9876 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.043
   PF09949.4  53 keiekileefpekkfiliGDsg 74 
                 ++++++l+++++ +  l++D++
  MMETSP0890-20130614|4973_1 292 NQLHDVLQDLKHARSSLLADDS 313
                 5666677777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.47s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1219.15
//
Query:       MMETSP0890-20130614|4972_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-24   85.7   0.2    1.1e-23   83.9   0.2    2.0  1  PF04851.10 Type III restriction enzyme, res subunit
    5.7e-15   55.0   0.1    1.5e-14   53.7   0.1    1.7  1  PF00270.24 DEAD/DEAH box helicase
    6.5e-06   25.8   0.8    0.00038   20.0   0.0    3.0  3  PF05148.10 Hypothetical methyltransferase
    0.00094   18.0   0.1    0.00094   18.0   0.1    2.0  3  PF00176.18 SNF2 family N-terminal domain
      0.001   18.6   0.3     0.0062   16.0   0.2    2.2  2  PF00564.19 PB1 domain
  ------ inclusion threshold ------
      0.045   13.3   0.0       0.22   11.0   0.0    2.2  2  PF13679.1  Methyltransferase domain
      0.049   13.3   0.0       0.12   12.1   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
      0.056   12.9   0.0       0.11   11.9   0.0    1.5  1  PF13604.1  AAA domain
      0.068   13.5   0.0       0.24   11.7   0.0    2.1  2  PF08241.7  Methyltransferase domain
        0.2   11.2   3.2        1.1    8.9   0.5    2.9  3  PF01935.12 Domain of unknown function DUF87


Domain annotation for each model (and alignments):
>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.2   7.9e-27   1.1e-23       2     184 .]     135     306 ..     134     306 .. 0.88

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 7.9e-27
  PF04851.10   2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlvaas..liarlarkflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile.....fkkafllglTATper 184
                 ++l+p Qeea++++ ++++k+ + +r+l+ m+TG+GKTlv+    ++ +  +k+l+++p +++ +q ++++    s+++ ++  +i+   k++   e +kk+ +++    k +++++  +  l+k  +e            + +    d++i+DE H++ ak+ ++ei +     + k + + lTATp+r
  MMETSP0890-20130614|4972_1 135 FRLYPPQEEALKKIYRNLNKS-DSRRFLVIMPTGCGKTLVLGLapFMVKNVNKVLIIAPDTTISSQIKNNL----SEYFDTTNGIIGRIIKNQINVELEKKIGQTSVDALKRIDVLVGHVADLKKINTE------------QIKAFSADLLIVDEGHHAMAKS-WKEIEAnllqeNDKLKTILLTATPQR 306
                 6899*****************.******************984348888888*******************....7777778888888888888888888888889999999************99654............44444579**************.****9999998777788*******86 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   1.1e-17   1.5e-14       2     167 ..     139     305 ..     138     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.1e-17
                 HHHHHHHHHHHSS......-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHH.......T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgg......gdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvl.......dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 167
                 p Q+ea++ i+++      +  lv ++TG GKTl+  ++ +  +++       +k+li+aP + +  q+ nnl+++++      +  ii+++  + + ++++        +++d++vg    l++  +t++++ ++  ll++DE ++ + ++ ++   ++lq      +l++i+l+AT++
  MMETSP0890-20130614|4972_1 139 PPQEEALKKIYRNlnksdsRRFLVIMPTGCGKTLVLGLAPFM-VKN------VNKVLIIAPDTTISSQIKNNLSEYFDTtN-GIIGRIIKNQI-NVELEKKIgqtsvdaLKRIDVLVGHVADLKKI-NTEQIKAFSADLLIVDEGHHAMAKSWKEIEANLLQE---NDKLKTILLTATPQ 305
                 6799999999977778887889***************97774.422......349***********************952.33333333221.111111112223446456***********997.55577999***************7777755556666...45599*******97 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       6.8   9.3e+03      93     114 ..      59      80 ..      51      81 .. 0.79
   2 ?   -2.9   0.0       2.7   3.8e+03      59      85 ..     144     172 ..     140     191 .. 0.70
   3 !   20.0   0.0   2.8e-07   0.00038      39     167 ..     577     737 ..     554     764 .. 0.72

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 6.8
  PF05148.10  93 kekvrsfdlvavnervvacdla 114
                 ++++r f l+ ++e+   cdl+
  MMETSP0890-20130614|4972_1  59 QDNLRDFTLHYMDEDNDWCDLT 80 
                 4578999999999999999986 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.7
  PF05148.10  59 Pldviirklkkkkdn..lvvadlGcGeak 85 
                  l++i r+l+k ++   lv++  GcG++ 
  MMETSP0890-20130614|4972_1 144 ALKKIYRNLNKSDSRrfLVIMPTGCGKTL 172
                 57788888887655422699999999875 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 2.8e-07
  PF05148.10  39 eafdlyhkgfrsqvkkWPenPldviirklk.......kkkdnlvvadlGcG.....eakia....eavrekekvrsfdlvavn.........ervvacdlakvPle......desvdvavfclslmgtn.ladflkeanrvlkvGGllkvaevksrfesvk 167
                 e ++ yh+ ++++ ++W + P ++++  +           +   ++d+GcG     e k+     ++ + + +v ++d+  ++          + va d + +  +      +++ d+avfcls+m ++ l++ l  a ++l + G +++   +s+f+ v+
  MMETSP0890-20130614|4972_1 577 ENYHEYHEFYAEKRMNWKQIPSEKVASMIYdeyvgnsGNSAPCKIIDFGCGrdglfEKKLDelcsKHNNTNFQVFAVDVEQLEfseapnyikLETVAGDYKDISSDstlkghEGTFDIAVFCLSFMMKDsLEVGLLTASKLLDPHGEIHIVLNTSKFTGVQ 737
                 45778*************999999999998888876556667789*****95444445655432222223346777777654322221122124566666666543222222789*********77665288899**************999999998775 PP

>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5     2e+03     207     243 ..      53      99 ..      23     101 .. 0.43
   2 !   18.0   0.1   6.8e-07   0.00094       4     167 ..     143     304 ..     140     308 .. 0.67
   3 ?   -2.6   0.0       1.3   1.8e+03     194     254 ..     541     608 ..     534     618 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.5
                 HHHHHHHHGGGGG-BB--GGGG..........TTTS--EEEEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxx RF
  PF00176.18 207 eglrrllkllkplllrrtkkdv..........ekglppksehllevr 243
                  ++++l++ l+ + l  +++d           e++lp+k+   +e++
  MMETSP0890-20130614|4972_1  53 VVASKLQDNLRDFTLHYMDEDNdwcdltndteEADLPKKEGLNHEIK 99 
                 23333333333333333322221111122224666777776666665 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 6.8e-07
                 ---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTH.HHHHHHHHHH.STT--EEE-----HHHHHHHHHHS...--------SEEEE-TTHHHHTT...TT----EEEEEEETTGGGG..--SSSHHHHHHTTSEEEEE--B---- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18   4 egvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssll.qqWlneiekh.agalrvvvyhgqtrerskvaesmv...sakqlatadvvittYdvlkkekkeesllkkvewkrvvlDEahrl..knsksklaeallklktkkrlcltGTP 167
                 e+++ ++r  +k+   r  +    +G GKTl +       +    ++ +++L+++P +++  q +n+++++ +   + ++    +++ +   e+++   s + l+  dv++     lkk +   +++k+   +++++DE+h+   k+ k   a+ l++ +  k ++lt+TP
  MMETSP0890-20130614|4972_1 143 EALKKIYRNLNKSD-SRRFLVIMPTGCGKTLVLGLAPF--MV---KNVNKVLIIAPDTTIsSQIKNNLSEYfD-TTNGIIGRIIKNQINVELEKKIgqtSVDALKRIDVLVGHVADLKKIN--TEQIKAFSADLLIVDEGHHAmaKSWKEIEANLLQENDKLKTILLTATP 304
                 55555555554443.56666666789999986543322..22...234679*****88762688999999953.33333322222222223344445667788999999999887777655..79999999**********9866777777788888899999******** PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.3
                 --.....-TTHHHHHHHHHHHGGGG.......G-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18 194 ekaferpaeekskeglrrllkllkp.......lllrrtkkdvekglppksehllevrlskeqkelYnk 254
                 ++ f+ p+   s+e++++ +++l +       + lr++ ++  + +++k+    ++  +k+ + +Y++
  MMETSP0890-20130614|4972_1 541 DSLFKEPDTISSPEQFKNFHRTLARmttqegvMKLRENYHEYHEFYAEKRMNWKQIPSEKVASMIYDE 608
                 55677777777777777777777776666665556666666677777777777777777777777765 PP

>> PF00564.19  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   4.6e-06    0.0062      29      60 ..      52      83 ..      46      86 .. 0.89
   2 ?   -1.6   0.0       1.4   1.9e+03      24      49 ..     437     468 ..     429     478 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.6e-06
                HHHHHHCTB-GSSEEEEEEETTCSEEEE-SHH CS
  PF00564.19 29 skveqrfklsdedvklkYpdedgdlvtitsde 60
                + v+++++    d++l+Y ded+d++ +t+d 
  MMETSP0890-20130614|4972_1 52 DVVASKLQDNLRDFTLHYMDEDNDWCDLTNDT 83
                568889999999******************96 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHCTB-......GSSEEEEEEET CS
  PF00564.19  24 feeLrskveqrfkls......dedvklkYpde 49 
                  +e +s v++rf ++      d+ +++k  +e
  MMETSP0890-20130614|4972_1 437 KQEAMSDVKRRFAQDgvenriDVVFQCKMLGE 468
                 56779999999999998888877777776554 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.3   5.9e+03      21      47 ..     155     180 ..     143     203 .. 0.57
   2 ?   11.0   0.0   0.00016      0.22      16      67 ..     609     661 ..     593     686 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 4.3
   PF13679.1  21 akeegsltvvDvGaGkgYLafvlasyl 47 
                 +++++ l ++  G+Gk  L   la ++
  MMETSP0890-20130614|4972_1 155 SDSRRFLVIMPTGCGKT-LVLGLAPFM 180
                 35555666778899986.444444444 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00016
   PF13679.1  16 lvkeaakeegsltvvDvGaGk.gYLafvlasylkeke.yklkvvgidvkeelve 67 
                  v + + ++++++++D+G+G+ g   + l  + ++++  +++v+++dv++   +
  MMETSP0890-20130614|4972_1 609 YVGN-SGNSAPCKIIDFGCGRdGLFEKKLDELCSKHNnTNFQVFAVDVEQLEFS 661
                 3333.567889*********8355567777744444459********9986554 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     9e-05      0.12       6      76 ..     420     499 ..     417     501 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9e-05
                 ----EEEE-TTS-HHHHH.HHHHHHHTTTS.........SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------ CS
  PF00271.26   6 kgikvailhgelpqnere.eileqfnagks.........kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgR 76 
                 +++k+a++ g lp+++r+ e ++++++  +         +v++  +++++G d p ++   ++++ +s t ++Q  GR+ R
  MMETSP0890-20130614|4972_1 420 PNLKAAAVFGVLPTESRKqEAMSDVKRR-FaqdgvenriDVVFQCKMLGEGYDNPWISISLFLCPAKSITKLAQTHGRALR 499
                 5677777777555555541333333332.2355557777*****************************************9 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.9e-05      0.11       6     112 ..     141     283 ..     136     303 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.9e-05
   PF13604.1   6 Qkeaveavl....tsgdrvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeeelgiearTiasllerldkeeaegrke.................................ldaktllvvDEAgmvdtrqlar 112
                 Q+ea++++     +s++r  +v  p G GKt vl+ +  ++++   +v+++Ap  +  ++++++l+   +T + +++r+ k++ + + e                                   + +ll+vDE   + ++ +++
  MMETSP0890-20130614|4972_1 141 QEEALKKIYrnlnKSDSRRFLVIMPTGCGKTLVLGLAPFMVKNV-NKVLIIAPDTTISSQIKNNLSEYFDTTNGIIGRIIKNQINVELEkkigqtsvdalkridvlvghvadlkkinteqikAFSADLLIVDEGHHAMAKSWKE 283
                 555555543222245555556669***********999999986.99*****************99999999999998888776655557888888888888888888888887755555444444499999987666666655 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0        10   1.4e+04      74      88 ..     139     153 ..     133     154 .. 0.76
   2 ?   11.7   0.0   0.00018      0.24       2      94 ..     623     725 ..     622     726 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 10
   PF08241.7  74 edpekalkeiaRvLk 88 
                 + +e+alk+i+R L 
  MMETSP0890-20130614|4972_1 139 PPQEEALKKIYRNLN 153
                 668999*****9875 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00018
   PF08241.7   2 dvGcG.tglllealaer......paarvtgvDlseemlatakerlkeeglelvvad......aeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                 d+GcG  gl+ ++l e        + +v++vD+++   ++a + +k e   +v +d        +l+  +++fD+ v+   ++  +++e  l  + ++L p+G + 
  MMETSP0890-20130614|4972_1 623 DFGCGrDGLFEKKLDELcskhnnTNFQVFAVDVEQLEFSEAPNYIKLE---TVAGDykdissDSTLKGHEGTFDIAVFCLSFMMKDSLEVGLLTASKLLDPHGEIH 725
                 99***8899999999999777777888888888888777777777777...55555222223556688899***********999****************99875 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5   0.00078       1.1     124     197 ..       5      85 ..       2      98 .. 0.85
   2 ?    0.9   0.0      0.22   3.1e+02      14      39 ..     148     173 ..     138     190 .. 0.85
   3 ?   -3.1   0.0       3.7     5e+03     112     142 ..     575     607 ..     554     618 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00078
  PF01935.12 124 eealeqaka........keekeklssdepveklleelkkekeelrklknqairrlldklerllrkggsfsnsstdliallle 197
                 eea+e +k+        + +k k+++ e  e + ++++ +k+++  +k+  +++l+d l+++ +++ + +n+  dl+++++e
  MMETSP0890-20130614|4972_1   5 EEACEFVKKelgdicetQYKKIKIQIYEAHENFDKTTW-QKKTNTTIKDVVASKLQDNLRDFTLHYMDEDNDWCDLTNDTEE 85 
                 566777777777777778999999999***********.999***************************8888888888754 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.22
  PF01935.12  14 vyldlnklvtrHlAilgsTGsGKSnt 39 
                 +y +lnk  +r+++++  TG GK+  
  MMETSP0890-20130614|4972_1 148 IYRNLNKSDSRRFLVIMPTGCGKTLV 173
                 6778899999*************965 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.7
  PF01935.12 112 depaaeaqrsvleealeqaka..keekeklssd 142
                  ++++ + +++++e+  ++k+   e++ ++ +d
  MMETSP0890-20130614|4972_1 575 LRENYHEYHEFYAEKRMNWKQipSEKVASMIYD 607
                 234444444444444444544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       704  (0.0514921); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:00.82
# Mc/sec: 2390.51
//
Query:       MMETSP0890-20130614|4981_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 870.44
//
Query:       MMETSP0890-20130614|4985_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-17   63.3   1.5    1.6e-17   63.1   0.1    1.7  2  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    4.8e-05   23.2   0.0      7e-05   22.7   0.0    1.3  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.033   14.0   4.2      0.041   13.7   2.9    1.1  1  PF04629.9  Islet cell autoantigen ICA69, C-terminal domain
      0.041   13.7   0.3      0.064   13.0   0.2    1.3  1  PF09123.6  Domain of unknown function (DUF1931)
        0.1   12.2   0.0       0.16   11.6   0.0    1.2  1  PF02269.11 Transcription initiation factor IID, 18kD subunit
       0.12   11.9   0.0       0.18   11.4   0.0    1.2  1  PF07524.8  Bromodomain associated


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.2   2.6e+03      41      49 ..      35      43 ..      15      49 .. 0.63
   2 !   63.1   0.1     7e-21   1.6e-17       2      62 ..      60     120 ..      59     122 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.2
                HHHHHHHHH CS
  PF00808.18 41 aseAaeick 49
                +se++ei++
  MMETSP0890-20130614|4985_1 35 TSESNEIVQ 43
                566666665 PP

  == domain 2    score: 63.1 bits;  conditional E-value: 7e-21
                 ---HHHHHHHHHHHTT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHH CS
  PF00808.18   2 eLPiarvkkImksdpdarkiskdAkeliaecveefieelaseAaeickkekrKTikaedik 62 
                  +P+  +k+Imk d d++++++dA +l+a+++e+f e+l++ A +i+++++rK+i+++d+ 
  MMETSP0890-20130614|4985_1  60 TIPKGSIKRIMKIDGDVNQVANDAIILVAKATELFMEKLTKDAHDIATANGRKIINYNDLV 120
                 58*********************************************************96 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.1e-08     7e-05       6      75 .]      61     126 ..      57     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3.1e-08
  PF00125.19   6 ilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75 
                 i+k ++ R+++  +        +  +a+  +++a+e ++e++++dA  +a  ++rk i   d+  A+ ld
  MMETSP0890-20130614|4985_1  61 IPKGSIKRIMKIDGDV----NQVANDAIILVAKATELFMEKLTKDAHDIATANGRKIINYNDLVNARELD 126
                 6777777777766665....47899****************************************99875 PP

>> PF04629.9  Islet cell autoantigen ICA69, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.9   1.8e-05     0.041       3     121 ..       6     126 ..       5     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-05
   PF04629.9   3 eFttLksLqDpvkklvekekeeqkekeelaakedkqlisleeekqeke.saskteeeksqlsslekillensvgaldel.ldlkpeeaflgevpkdplepedgdkdelslLneilsassle 121
                 +F+ + +  D+ +++ ++ kee++e+e  + + ++ +  + e+k  +  ++ +    k++++ + ki  +   +a d + l  k+ e+f+++++kd+ +  +++   +   n++++a  l+
  MMETSP0890-20130614|4985_1   6 DFMDVDEAGDANHEVADDSKEEEEEEESHTSESNEIVQPQREKKKSSSpQGDPLTIPKGSIKRIMKIDGDVNQVANDAIiLVAKATELFMEKLTKDAHDIATANGRKIINYNDLVNARELD 126
                 7888888999999*****999999998888888888777766665443144477778999******999999999997527889*************999999888899999999887665 PP

>> PF09123.6  Domain of unknown function (DUF1931)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.8e-05     0.064      22      64 ..      88     130 ..      66     136 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.8e-05
                 HHHHHHH---TT---HHHHHH----B--GGGS---HHHHHHHH CS
   PF09123.6  22 sdvVekklydLllvaqenAkangrdviepadlpiTkgleesin 64 
                     e  +++L + a+  A+angr++i++ dl  +++l ++++
  MMETSP0890-20130614|4985_1  88 AKATELFMEKLTKDAHDIATANGRKIINYNDLVNARELDSELH 130
                 44445556788899******************99999998886 PP

>> PF02269.11  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.2e-05      0.16       7      61 ..      66     120 ..      63     128 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.2e-05
  PF02269.11   7 lqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDll 61 
                 ++ ++ + Gdv++  ++++ l+ +  + ++  l++ a ++a  +g++ i+  Dl+
  MMETSP0890-20130614|4985_1  66 IKRIMKIDGDVNQVANDAIILVAKATELFMEKLTKDAHDIATANGRKIINYNDLV 120
                 78899999*********************************************97 PP

>> PF07524.8  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.9e-05      0.18      35      67 ..      90     122 ..      78     124 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.9e-05
   PF07524.8  35 iaqsYiqelgrqakrfaehagRseptlkDvvlt 67 
                  ++ ++++l+++a+  a + gR   ++ D+v++
  MMETSP0890-20130614|4985_1  90 ATELFMEKLTKDAHDIATANGRKIINYNDLVNA 122
                 57789*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      657  (0.0480544); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.44s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 438.36
//
Query:       MMETSP0890-20130614|4979_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-45  155.4   0.0    2.8e-45  154.4   0.0    1.5  1  PF00069.20 Protein kinase domain
    2.1e-40  138.3   0.0    7.4e-40  136.5   0.0    1.9  1  PF07714.12 Protein tyrosine kinase
     0.0076   15.2   0.3      0.028   13.3   0.0    2.0  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   6.1e-49   2.8e-45       2     257 ..     282     590 ..     281     591 .. 0.84

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 6.1e-49
                 EEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..........HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE................CEESS-CSS----GGGS-HHH....HHTSHHHHHHHHHHHHHHHHHHHHC--.................-TTTST..HHHHHHHHHCCCHHTTS--GGGGCSHHH.............HHHHHHHHHHT-SSGGGS--HHHHHTS CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..........kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl................eksseklttlvgtreYmAPEv....llkakeytkkvDvWslGvilyelltgk.................lpfsge..seedqleliekilkkkleedepksssks.............eelkdlikkllekdpakRltaeeilkh 257
                 ++++k+G+Gs G+Vyk++  +    vA+K+l     + ++ ++  rE+ +l+kl+Hp++++++++ +++ ++y+v+e+++   l ++l+          +  +ls ++  kia +++ +l+ylH +++iH DLKp+NiLl+++ + +++DFGl++ +                  +++  ttl gt  + APE+    l+k+ ++ +k Dv+s+G++l+ ++  +                 +        ++  ++ +++  + k e ++++                  +e++ l++k++++ p++R++++e+ ++
  MMETSP0890-20130614|4979_1 282 RVVRKIGAGSAGHVYKGEYIGAV--VAIKQLYSTYIDPSNLDEFSREVTLLHKLKHPHVLTFYGIARRDVYCYIVTEFCPY-ALDSILSggrgndpgtkAPPRLSVTHRVKIAHEVALALAYLHTEHLIHHDLKPANILLNSDFVARVSDFGLSQLVaresesslhgvasknkGIHNNPPTTLGGTAAFSAPEIslgtLKKGFQALSKLDVFSFGIVLAAIFAPNgdpyyfyvpgadrtgvyT----PtgGQAATMAALKNAGTAKREAEIRHAV--AhtklrpmvpnalpPEIRPLMEKCWAHIPEERPSFNEVAQS 590
                 689*****************998..******************999**********************************9.9999*****9999998777888**************************************************999************99988899999**************7776669*********************944445444433333333332....1332333333333333333333333332..13366777777777**********************99875 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   1.6e-43   7.4e-40       2     259 .]     282     591 ..     281     591 .. 0.85

  Alignments for each domain:
  == domain 1    score: 136.5 bits;  conditional E-value: 1.6e-43
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT........GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCE.......EESTT-EECGGGS.......-HHHHHHSE.....EEHHHHHHH---HHHHHHTTT-GT..............................TTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk........ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyy.......kkkeeaklpvkWm.......apEslkekk.....ftsksDvWsfGvllwEiftlgesp..............................ypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                 ++ +k+G+G+ G+V++g++          Va+K+l +   + ++ +ef +e+ +++klkhp++++++g+  ++  ++ivte++++  L+++L             ++l++ + +k+a ++a +++yL++++l+H dL   N+Ll+++ v ++sDfGL++ + ++++        k+k+ ++ p   +       apE+   +        sk Dv+sfG++l  if     p                                   ++e+ +++ +++ r + p+  p+e+  lm++Cw++ peeRp+f+e+ + l
  MMETSP0890-20130614|4979_1 282 RVVRKIGAGSAGHVYKGEYI------GAVVAIKQLySTYIDPSNLDEFSREVTLLHKLKHPHVLTFYGIARRDVYCYIVTEFCPY-ALDSILSGGrgndpgtkAPPRLSVTHRVKIAHEVALALAYLHTEHLIHHDLKPANILLNSDFVARVSDFGLSQLVARESESslhgvasKNKGIHNNPPTTLggtaafsAPEISLGTLkkgfqALSKLDVFSFGIVLAAIFAPNGDPyyfyvpgadrtgvytptggqaatmaalknaGTAKREAEIRHAVaHTKLRPMVPNALPPEIRPLMEKCWAHIPEERPSFNEVAQSL 591
                 6789****************......899******666788899***************************9999*********9.6999999888999*999999*******************************************************6555554455432222222222221123333338886544336775566788******************************************999987533446677888887889999******************************99876 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.3   1.4e+03      57      81 ..     322     346 ..     283     349 .. 0.74
   2 !   13.3   0.0   6.2e-06     0.028     116     165 ..     383     429 ..     376     444 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.3
   PF06293.9  57 rsvrEfrllkrLreagvpvpkpvaa 81 
                  + rE+ ll++L+   v + + +a 
  MMETSP0890-20130614|4979_1 322 EFSREVTLLHKLKHPHVLTFYGIAR 346
                 5789999999999999988888875 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 6.2e-06
   PF06293.9 116 aeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDl 165
                 +++ + ++ ++v+ + a +h +++ H dl ++nill+ +     + + D+
  MMETSP0890-20130614|4979_1 383 SVTHRVKIAHEVALALAYLHTEHLIHHDLKPANILLNSDF---VARVSDF 429
                 667788999***************************9987...4555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       990  (0.0724108); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:01.05
# Mc/sec: 1417.27
//
Query:       MMETSP0890-20130614|4989_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   28.8   0.3    2.1e-06   28.0   0.2    1.3  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    2.3e-05   24.5   0.3    5.9e-05   23.1   0.2    1.8  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   3.1e-10   2.1e-06      11      99 ..     276     359 ..     266     360 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.1e-10
   PF13640.1  11 flspHvDnsesssrrltlllylndpeweeeGGelelypsdr..........segvakevedeevv.......pkpgrlvlFksdrslHrvtpvgaqgrrlaitgwf 99 
                  l pHvD    s+  +tl l l  ++  ++GG l+++ +++                       +        k gr+v+  + + +H+v pv ++g+r ++++w+
  MMETSP0890-20130614|4989_1 276 ALVPHVDD---SE--VTLNLCLD-AN--FQGGGLVFHGKRDpinttiayelP------------HpneyvyqHKLGRAVFHLG-NHFHEVLPV-TRGERHVLIMWL 359
                 5679***9...55..55555588.77..8********985346443333321............1112234588889999999.*********.***********8 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   8.6e-09   5.9e-05       6      98 ..     258     360 ..     253     361 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.6e-09
                 EEEEEES......--E-EEEEEEEESSSCEEEEEEE....T--EEEEEE-EE.......SCECECTSTT....EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
  PF03171.15   6 rvnrYpp......pekglglgpHtDnenriltillq....ddggglqfrked.......kwidvppdpv....allvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                  v  Y p      +  +  l pH+D+  + +t++l     ++gggl f  +             +  p+     +  + g+++       + +++H+vlp+trgeR +l+ +lr
  MMETSP0890-20130614|4989_1 258 FVVGYGPseapqhNVTKNALVPHVDD--SEVTLNLCldanFQGGGLVFHGKRdpinttiA----YELPHpneyVYQHKLGRAVF-----HLGNHFHEVLPVTRGERHVLIMWLR 360
                 566666666666666788999*****..*********************99888865432....33333212356666666555.....7789*******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1221.80
//
Query:       MMETSP0890-20130614|4991_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.82
# Mc/sec: 528.95
//
Query:       MMETSP0890-20130614|4986_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.31    8.7  47.3      0.019   12.7  28.1    1.9  2  PF04147.7  Nop14-like family
       0.57    7.9   3.3       0.85    7.3   2.3    1.3  1  PF11847.3  Domain of unknown function (DUF3367)


Domain annotation for each model (and alignments):
>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.02   1.4e+02     623     699 ..      10      84 ..       2     132 .. 0.58
   2 ?   12.7  28.1   2.8e-06     0.019     285     441 ..     156     300 ..     149     330 .. 0.53

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.02
   PF04147.7 623 ekekeevsspfktakslseslnlsksekvkkleptklslsellksseeeeeelklsllsallslleklvelwkeksa 699
                 +ke +e++++  ++k+++  ++++++ + ++ + tkl+ ++++      ++   l++l++ ++  e +v+l +++++
  MMETSP0890-20130614|4986_1  10 QKEVQEKKQKEVQEKKHNYYIKMNAEMNAEHDDGTKLEARSFS--LPSRQKLDNLAALDTRVRRAEDAVRLAENEKS 84 
                 2222233333334444444444555555555555555555555..33333333455555555555555555555554 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.8e-06
   PF04147.7 285 kklEeeRlrRmrgeeeddeeeedsekesaddlddefeedddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkeelpftfpcPksheellellkdvsle 441
                    E+e l  m++++ ++e+ee++  + +dd+++e+ +  +e+ +++++e+ ++ ee  +++d+d+++dddde+    +++ d+++e+  +e++ +ee+e+e+ + +   +++++ +++ k +  ++e+++ +++f+ ++ ++++el   l ++++e
  MMETSP0890-20130614|4986_1 156 SHTEKETLTKMEEDNAAEEQEENK--IVNDDEENESLNKIEEEADDEENESLNKIEE--EADDDDDDDDDDDEK----EMNCDDDSEE--EEDEKQEESENEKVK-TLPLQAKTDDNNSIKINFFNQERQSPTKKFSPDT-NDVDELRRRLAELENE 300
                 5789************99999986..9999999996633333333332222222222..333333333333333....2222222222..222222222222222.1222333333334444444444444444444333.4556666655555555 PP

>> PF11847.3  Domain of unknown function (DUF3367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.3   0.00012      0.85     580     665 ..     137     223 ..      86     247 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00012
   PF11847.3 580 agggapkaatlvdadallvvsggpesllrlaaagllegdsgpvvltadaeeakl.pvadvavtdgprarevdfgeveaataaartad 665
                  +++a++  t+ d++ ll+ ++  e+l ++++++++e+++   ++++d+e+++l +++++a +++ ++ ++ ++e ++ ++   + d
  MMETSP0890-20130614|4986_1 137 IRDHATELYTALDQQILLMSHTEKETLTKMEEDNAAEEQEENKIVNDDEENESLnKIEEEADDEENESLNKIEEEADDDDDDDDDDD 223
                 33478888899999999***********************99999999866666255555555444444444444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2071  (0.151477); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.52u 0.38s 00:00:01.90 Elapsed: 00:00:01.17
# Mc/sec: 704.57
//
Query:       MMETSP0890-20130614|4993_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   10.7  17.3      0.038   13.2   5.1    2.8  3  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
       0.26    9.2  33.5       0.33    8.8  23.2    1.1  1  PF05557.8  Mitotic checkpoint protein
       0.35   10.5   6.8       0.23   11.1   3.1    1.8  2  PF07439.6  Protein of unknown function (DUF1515)
        1.1    8.9  30.5        2.3    7.9   9.2    2.1  2  PF08614.6  Autophagy protein 16 (ATG16)
        1.3    8.8  16.7        1.9    8.3   1.1    3.6  3  PF05377.6  Flagella accessory protein C (FlaC)
        2.8    6.9  11.5        3.7    6.5   8.0    1.3  1  PF04582.7  Reovirus sigma C capsid protein
        4.5    7.2  22.2       0.15   12.0   4.2    2.4  2  PF08702.5  Fibrinogen alpha/beta chain family
        5.2    7.0  30.5        7.8    6.4   6.6    3.0  2  PF09304.5  Cortexillin I, coiled coil
        5.4    6.7  24.3         10    5.9   3.1    3.5  3  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
        5.4    6.6  38.3        1.1    8.8   9.4    2.1  2  PF07926.7  TPR/MLP1/MLP2-like protein
        5.7    6.5  12.2        8.4    5.9   0.2    3.0  3  PF00427.16 Phycobilisome Linker polypeptide
        6.7    6.3  10.7        9.2    5.8   7.4    1.2  1  PF05192.13 MutS domain III
        8.3    5.9  15.1        7.9    6.0   0.3    4.4  4  PF12436.3  Ubiquitin-specific protease 7
        8.3    6.1  25.0         52    3.6  17.3    2.6  1  PF09486.5  Bacterial type III secretion protein (HrpB7)
        8.9    5.7  38.7          6    6.3   6.9    2.1  2  PF00769.14 Ezrin/radixin/moesin family
        9.7    4.3  24.5         13    3.9  16.9    1.3  1  PF13166.1  AAA domain


Domain annotation for each model (and alignments):
>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.2     0.086        74     113     162 ..       6      59 ..       2      65 .. 0.66
   2 ?   13.2   5.1   4.5e-05     0.038     105     174 ..      44     113 ..      31     121 .. 0.86
   3 ?    3.2   0.4      0.05        43      30      64 ..     115     147 ..     113     157 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.086
   PF05791.6 113 ekLqeeiqknqkevkqll....eeLkafknklakdtksfksdvdeltsiLksqg 162
                 ek + ++++ q+ev+++l     e++++   l+++t s+k+  +el s  + q+
  MMETSP0890-20130614|4993_1   6 EKERATASQRQQEVESKLasaqVEMNNLAVLLEEKTASYKTVESELESSNQRQQ 59 
                 555555666666666554222257888888899999999888888877666554 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 4.5e-05
   PF05791.6 105 ketlkeglekLqeeiqknqkevkqlleeLkafknklakdtksfksdvdeltsiLksqgadieklkkeiek 174
                  +t  ++le+ ++  q+ + e   + +eL++++++l+++t   ++++ e+ ++L+++ a  ++ ++e+e+
  MMETSP0890-20130614|4993_1  44 YKTVESELESSNQRQQTLEVELSTTQKELNDLRSQLEEKTALHEATATEISATLEKERATASQRQRELES 113
                 4567778888888889999999*********************************************986 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.05
   PF05791.6  30 lilkqpnv.nlseissinkdlqkkitqhqklakana 64 
                 +i  q++v n++++s   +++   + +++++ak+n 
  MMETSP0890-20130614|4993_1 115 VIAAQAEVtNFKKMS---AEVSTTLEKERETAKQNQ 147
                 555666644677777...777788888888888775 PP

>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  23.2   0.00039      0.33     123     274 ..       2     150 ..       1     164 [. 0.86

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00039
   PF05557.8 123 ekkaeneaeeaeeeakllkkkldaekkklqkekedqlkeakesisviknelselqlkaqnadlelksleseleelkeqleekqkklaeaekklqsLkseqaesadnsvkikeLeeelksyeqevevvKsskeellkvpeLerelealreenk 274
                 ++++e+e ++a ++++ ++ kl  ++  + ++ +  l+e   s   ++ el+    + q  ++el ++++el++l+ qleek +   +    +++    + e+a  s++ +eLe ++ + ++ev   K +  e     e ere +++++++ 
  MMETSP0890-20130614|4993_1   2 SATLEKERATASQRQQEVESKLASAQVEM-NNLAVLLEEKTASYKTVESELESSNQRQQTLEVELSTTQKELNDLRSQLEEKTALHEATATEISAT--LEKERATASQRQRELESKVIAAQAEVTNFKKMSAEVSTTLEKERETAKQNQQII 150
                 57899999**************9999999.889999999999*************9***************************9999988899887..3459**************999999998888887777776677777777776653 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.3     2e+03      42      55 ..      16      29 ..       6      55 .. 0.45
   2 ?   11.1   3.1   0.00027      0.23       5      74 ..      60     133 ..      55     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.3
   PF07439.6 42 mdelvervtalegs 55
                  e+  ++++ +  
  MMETSP0890-20130614|4993_1 16 QQEVESKLASAQVE 29
                44333333322222 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00027
   PF07439.6   5 gvlqqlgtllaevkelredlk....rsedrsdasrakmyrkmdelvervtalegsvvklkaditsvkevtedvk 74 
                 ++  +l t ++e+++lr +l       e  +  + a + +      +r + le+ v++ +a++t+ k+++++v 
  MMETSP0890-20130614|4993_1  60 TLEVELSTTQKELNDLRSQLEektaLHEATATEISATLEKERATASQRQRELESKVIAAQAEVTNFKKMSAEVS 133
                 56667899999******9998655556777777888999999999**************************996 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.2    0.0026       2.3      63     134 ..      10      81 ..       2      88 .. 0.77
   2 ?    6.5   8.6     0.007         6      27     116 ..      77     155 ..      76     164 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0026
   PF08614.6  63 sgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseiksleeeikd 134
                 ++ +  ++e+e kla+ + e+++l    +e + +   +++ele +++++++ e el++ q+e+++l+ ++++
  MMETSP0890-20130614|4993_1  10 ATASQRQQEVESKLASAQVEMNNLAVLLEEKTASYKTVESELESSNQRQQTLEVELSTTQKELNDLRSQLEE 81 
                 344556788899999999999999888888888888888888888888888888888888888888877765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.007
   PF08614.6  27 rkLadrtrllkaenealqaekkevqssassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaekek 116
                 ++L ++t+l++a + +++a         ++    + ++ +  + ele k+++ ++e+++ +k ++e++++l +  e  +++++ i +k +
  MMETSP0890-20130614|4993_1  77 SQLEEKTALHEATATEISAT-------LEK----ERATASQRQRELESKVIAAQAEVTNFKKMSAEVSTTLEKERETAKQNQQIIEQKLE 155
                 57888888888888888772.......222....22223335679999************999999999999998888888888877765 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6      0.47     4e+02       8      17 ..      29      38 ..      15      59 .. 0.50
   2 ?    8.3   1.1    0.0022       1.9      10      32 ..      59      81 ..      49      83 .. 0.82
   3 ?    7.4   1.9    0.0042       3.6       3      38 ..     109     144 ..     107     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.47
   PF05377.6  8 klsklstvva 17
                ++++l++ ++
  MMETSP0890-20130614|4993_1 29 EMNNLAVLLE 38
                3333333333 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0022
   PF05377.6 10 sklstvvatvrkeleelsksvek 32
                  l+++++t +kel++l++++e+
  MMETSP0890-20130614|4993_1 59 QTLEVELSTTQKELNDLRSQLEE 81
                568999*************9985 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0042
   PF05377.6   3 deLEnklsklstvvatvrkeleelsksvekikenvk 38 
                  eLE+k+   +++v++ +k   e+s+++ek  e+ k
  MMETSP0890-20130614|4993_1 109 RELESKVIAAQAEVTNFKKMSAEVSTTLEKERETAK 144
                 69***************************9888875 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.0    0.0044       3.7      35     150 ..      14     130 ..       2     152 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0044
   PF04582.7  35 erltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaals.slqtevdanstdisnlksdvsanglnitdleervk 150
                 +r +++e+  as +  ++++   l +  a  + v s l+  +   + l+ e+++ q+ ++ l s+l + + l +a ++ +s +l++e  + s    +l+s+v a   ++t++++   
  MMETSP0890-20130614|4993_1  14 QRQQEVESKLASAQVEMNNLAVLLEEKTASYKTVESELESSNQRQQTLEVELSTTQKELNDLRSQLEEKTALHEATATEISaTLEKERATASQRQRELESKVIAAQAEVTNFKKMSA 130
                 445555555555555555555555555555555555555555555666666666666666666666666777777766675246777777788888999999999888888876544 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   5.8      0.51   4.3e+02      28     114 ..       6      80 ..       2      91 .. 0.43
   2 ?   12.0   4.2   0.00018      0.15      22      91 ..      92     160 ..      88     166 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.51
                 CCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  28 dkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekki..ililekkilaqesqirvLqevlr 114
                 +k + + +++ +++e++L++++ + ++   l ++               ++ ++ v+++le+     ++le   ++ +++++ L+++l+
  MMETSP0890-20130614|4993_1   6 EKERATASQRQQEVESKLASAQVEMNNLAVLLEEK--------------TASYKTVESELESSNqrQQTLEVELSTTQKELNDLRSQLE 80 
                 34444444444444444444444444444333333..............3333333333333332234444444444444444444444 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00018
                 HHHHCHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH CS
   PF08702.5  22 riqdlldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekki 91 
                 +i+ +l+k + + +++ ++le+++  ++++ ++ ++++ +++++l+++++ ak+n++i ++  ++ e+ i
  MMETSP0890-20130614|4993_1  92 EISATLEKERATASQRQRELESKVIAAQAEVTNFKKMSAEVSTTLEKERETAKQNQQIIEQKLEE-ERAI 160
                 7999******************************************9999999998887776666.5555 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   9.1     0.056        48      10      69 ..      15      81 ..       3      90 .. 0.47
   2 ?    6.4   6.6    0.0092       7.8      45     104 ..      93     156 ..      86     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.056
   PF09304.5 10 sknelankLagLers.......ledekvsqeeLakqkdeLksllasleaqkaerekrlrelqakide 69
                 ++e+ +kLa+ + +       le++ +s + +  + +  ++++++le +    +k l++l+++++e
  MMETSP0890-20130614|4993_1 15 RQQEVESKLASAQVEmnnlavlLEEKTASYKTVESELESSNQRQQTLEVELSTTQKELNDLRSQLEE 81
                2345555555555441111111333333333334444445556666666666666666666666665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0092
   PF09304.5  45 llasleaqkaerekrlrelqakidellknlek.ekl.a..kleLesrlskaekDkaileLkLae 104
                   a+le+++a   +r rel++k+  ++ ++ + +k+ a     Le+++  a++++ i+e kL e
  MMETSP0890-20130614|4993_1  93 ISATLEKERATASQRQRELESKVIAAQAEVTNfKKMsAevSTTLEKERETAKQNQQIIEQKLEE 156
                 5689******************9988887765244422112357888888899999***99988 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.6      0.12     1e+02      84     107 ..       4      27 ..       2      38 .. 0.82
   2 ?    5.3   5.7     0.017        15      46     102 ..      33      89 ..      30     129 .. 0.70
   3 ?    5.9   3.1     0.012        10      66     113 ..     117     164 ..     110     166 .] 0.86

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.12
   PF06148.6  84 kvesvrsklseveeeveskikekk 107
                 ++e+ r+  s++++evesk+++++
  MMETSP0890-20130614|4993_1   4 TLEKERATASQRQQEVESKLASAQ 27 
                 688999999**********99876 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.017
   PF06148.6  46 llelvnedyadFvslSgsLvglqeeleelesplaaarkkvesvrsklseveeevesk 102
                 l+ l +e  a +  + ++L + +++ ++le++l++++k++++ rs+l+e  +  e+ 
  MMETSP0890-20130614|4993_1  33 LAVLLEEKTASYKTVESELESSNQRQQTLEVELSTTQKELNDLRSQLEEKTALHEAT 89 
                 566666777778888999999999999999999999999999999998765433322 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.012
   PF06148.6  66 glqeeleelesplaaarkkvesvrsklseveeeveskikekkdleeek 113
                   q e+ ++++  a++  ++e+ r+  +++++ +e+k++e +++ ++k
  MMETSP0890-20130614|4993_1 117 AAQAEVTNFKKMSAEVSTTLEKERETAKQNQQIIEQKLEEERAIFNQK 164
                 568889999999999*************************99987766 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   9.4    0.0013       1.1      54     120 ..       9      78 ..       3      79 .. 0.86
   2 ?    4.6  12.3     0.026        22      13      95 ..      77     159 ..      76     165 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
   PF07926.7  54 haetiqeLtklkkelaelqkeaselrkeadsakael...neleekweeeksmLevelselekkieelneq 120
                  a+++q  ++++++la++q e+++l  +++++ a++   + + e+ +++++ Levels  +k +++l++q
  MMETSP0890-20130614|4993_1   9 RATASQRQQEVESKLASAQVEMNNLAVLLEEKTASYktvESELESSNQRQQTLEVELSTTQKELNDLRSQ 78 
                 567799999**********************99998333445567788999****************998 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.026
   PF07926.7  13 krlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelae.lqkeaselrkeadsakaelneleek 95 
                 ++le+++a +e++++++   le+++ +a + q++ e+ +i   + + + +k+++e++  l+ke ++ +++ +  +++l+e++  
  MMETSP0890-20130614|4993_1  77 SQLEEKTALHEATATEISATLEKERATASQRQRELESKVIAAQAEVTNFKKMSAEVSTtLEKERETAKQNQQIIEQKLEEER-A 159
                 688999**************************************9*9****9999876145555555555555555555544.3 PP

>> PF00427.16  Phycobilisome Linker polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2    0.0098       8.4      22      50 ..       5      33 ..       3      41 .. 0.87
   2 ?    1.4   0.2      0.24   2.1e+02      16      54 ..      42      79 ..      39      95 .. 0.75
   3 ?    5.3   1.4     0.015        13      22      76 ..      97     152 ..      76     157 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0098
                -------GGGS----HHHHH-----HHHH CS
  PF00427.16 22 fgndhvmeserltslEsqlrngeisvreF 50
                ++++ +++s+r++++Es+l + +++++++
  MMETSP0890-20130614|4993_1  5 LEKERATASQRQQEVESKLASAQVEMNNL 33
                56788999***************999875 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.24
                HHHHHH-------GGGS----HHHHH-----HHHHHHHH CS
  PF00427.16 16 aaYrqvfgndhvmeserltslEsqlrngeisvreFvral 54
                a Y+ v   +   +++r+++lE +l++ + +++++  +l
  MMETSP0890-20130614|4993_1 42 ASYKTVE-SELESSNQRQQTLEVELSTTQKELNDLRSQL 79
                5677765.6677888889999999998887777765555 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.015
                 -------GGGS----HHHHH-----HHHHHHHHHT.SHHHHHHHTTTS-HHHHHHH CS
  PF00427.16  22 fgndhvmeserltslEsqlrngeisvreFvralak.Selyrkrffekvsnyrvvel 76 
                 ++++ +++s+r+ +lEs++   + +v +F +  a+ S + +k+  +  +n++++e+
  MMETSP0890-20130614|4993_1  97 LEKERATASQRQRELESKVIAAQAEVTNFKKMSAEvSTTLEKERETAKQNQQIIEQ 152
                 7888999**********************876554366666666666677777766 PP

>> PF05192.13  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.4     0.011       9.2      50     174 ..      10     163 ..       6     165 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
                 --HHHHHHHH--------TT.---HHHH.......TT-.--HHHHHHHHH-....----TTT---HHHHHHHHHHHHHH....----..................--......---.-HHHHHHHHCCB-SS--SSS-----B--HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxx.......xxx.xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05192.13  50 aeinaRldaveallenealr.edlrelL.......kkl.pDlerllsrlal....grasprdllalkstlkalpelkklesselssh.................ellaallaslnp.leellkliedaideepplarrdgglirpilalekeilqe 174
                 a+  +R++ ve  l   +++ ++l  lL       k + + le+  +r+++     + + ++l +l+s l++  +l+++  +e+s +                 + +aa ++ + + ++++ +++++++ +e + a++++++i + l++e +i+++
  MMETSP0890-20130614|4993_1  10 ATASQRQQEVESKLASAQVEmNNLAVLLeektasyKTVeSELESSNQRQQTleveLSTTQKELNDLRSQLEEKTALHEATATEISATlekeratasqrqrelesKVIAAQAE-V-TnFKKMSAEVSTTLEKERETAKQNQQIIEQKLEEERAIFNQ 163
                 6667788888888853333343333333222221144423555555665553333344799999999999888888666444444445555555555665333222222222.2.1499************9999999999999999999988875 PP

>> PF12436.3  Ubiquitin-specific protease 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.24     2e+02      12      26 ..       4      18 ..       2      21 .. 0.77
   2 ?    6.0   0.3    0.0093       7.9       9      28 ..      93     112 ..      85     113 .. 0.85
   3 ?    2.6   0.1      0.11        93       9      18 ..     132     141 ..     130     143 .. 0.79
   4 ?    3.7   0.4     0.047        40       9      19 ..     150     160 ..     149     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.24
   PF12436.3 12 rleeEreerErrrKE 26
                 le+Er+   +r  E
  MMETSP0890-20130614|4993_1  4 TLEKERATASQRQQE 18
                589999988888777 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0093
   PF12436.3   9 lpfrleeEreerErrrKERe 28 
                 ++  le+Er+   +r +E e
  MMETSP0890-20130614|4993_1  93 ISATLEKERATASQRQRELE 112
                 6788*************988 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.11
   PF12436.3   9 lpfrleeEre 18 
                 +++ le+Ere
  MMETSP0890-20130614|4993_1 132 VSTTLEKERE 141
                 6788999998 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.047
   PF12436.3   9 lpfrleeEree 19 
                 ++++leeEr+ 
  MMETSP0890-20130614|4993_1 150 IEQKLEEERAI 160
                 789******85 PP

>> PF09486.5  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  17.3      0.06        52      14     147 ..      13     146 ..       2     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.06
   PF09486.5  14 arrderlraelsalraalealdrelaecraaveakadrlaahdarlddlagggasltidaylqlrryrdvlveelaaaeqavaaarqalqakvaelaavrreiar..ldAqidvyr..eradrlrraeeaaredAedE 147
                  +r++ ++ +l+ ++ ++++l+  l+e+ a  +  + +l++ ++r ++l     s t  +   l+  r++l+e+ a+ e+ ++ +++ l++ +a   + +re+      Aq++v +  +  +++    e++re A+  
  MMETSP0890-20130614|4993_1  13 SQRQQEVESKLASAQVEMNNLAVLLEEKTASYKTVESELESSNQRQQTLEV-ELSTTQKE---LNDLRSQLEEKTALHEATATEISATLEKERATASQRQRELESkvIAAQAEVTNfkKMSAEVSTTLEKERETAKQN 146
                 6999*****************************************999988.66666555...56779****************************999999964224677777651155677788899999999754 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.9     0.007         6      64     122 ..       3      61 ..       1      69 [. 0.84
   2 ?    2.6  17.9     0.091        78      25     122 ..      58     159 ..      51     165 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.007
  PF00769.14  64 erLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeea 122
                 ++Le+e a   + ++e e +++ a++e+ +l++  e+k+a  + ++ el+++ + ++  
  MMETSP0890-20130614|4993_1   3 ATLEKERATASQRQQEVESKLASAQVEMNNLAVLLEEKTASYKTVESELESSNQRQQTL 61 
                 67999999999999999*********************999999999999988866654 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.091
  PF00769.14  25 qkele.eseekaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeere......kkeaeteqlqkelreareaeeea 122
                 q+ le e + + +el+  + q ee+   ++ +++ + e  ++Le+e a   + ++eLe +v +a+aev + ++ ++      +ke et++ +++++e++ +ee+a
  MMETSP0890-20130614|4993_1  58 QQTLEvELSTTQKELNDLRSQLEEK---TALHEATATEISATLEKERATASQRQRELESKVIAAQAEVTNFKKMSAevsttlEKERETAKQNQQIIEQKLEEERA 159
                 3333312333455555555555544...4555566677788999999999999***************9888766511122246666666666666666655554 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  16.9     0.016        13     336     470 ..      10     138 ..       1     164 [. 0.53

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.016
   PF13166.1 336 eeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekeikelekelkneeptaeeinkeLka 470
                  +  + ++++e Kl  ++ ++e++++a  +ee ++++++++ +++++N++ ++l+ e ++ +k+l+  l+++l+e+ ++++++++   +  ++leke ++++++ ++le+++ + ++e++n ++  +e+ + L++
  MMETSP0890-20130614|4993_1  10 ATASQRQQEVESKL--ASAQVEMNNLAVLLEEKTASYKTVESELESSNQRQQTLEVELSTTQKELND-LRSQLEEK-TALHEATAT--EISATLEKERATASQRQRELESKVIAAQAEVTNFKKMSAEVSTTLEK 138
                 33333444444444..555666666666666666666666666666666666666666666666643.55555555.234433222..23345556666666666666666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2900  (0.212112); expected 273.4 (0.02)
Passed bias filter:                      755  (0.0552224); expected 273.4 (0.02)
Passed Vit filter:                       139  (0.0101668); expected 13.7 (0.001)
Passed Fwd filter:                        69  (0.00504681); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.37u 0.39s 00:00:01.76 Elapsed: 00:00:01.11
# Mc/sec: 358.37
//
Query:       MMETSP0890-20130614|4997_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 256.75
//
Query:       MMETSP0890-20130614|5007_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.6   1.6      2e-07   31.1   1.0    1.5  1  PF13519.1  von Willebrand factor type A domain
    3.6e-06   25.9   9.6     0.0052   16.1   0.4    3.2  2  PF02809.15 Ubiquitin interaction motif
    1.5e-05   24.6   0.4    3.3e-05   23.4   0.0    1.7  2  PF04056.9  Ssl1-like
  ------ inclusion threshold ------
       0.18   11.2   4.2       0.23   10.9   0.0    2.2  2  PF05526.6  Rhodococcus equi virulence-associated protein
       0.33   10.6   8.3       0.56    9.9   5.8    1.3  1  PF06459.7  Ryanodine Receptor TM 4-6
          3    7.3   9.8          5    6.6   6.8    1.3  1  PF05843.9  Suppressor of forked protein (Suf)


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   1.0   8.7e-11     2e-07       7     146 ..       2     145 ..       1     279 [. 0.84

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 8.7e-11
   PF13519.1   7 DvSgSMnaedvsptrldaakaalkdllde....lpgdrvglvafsgsaelvapltsdraalkaalnsldprlmpgggtnlaaalalalella...kadgrraaivlvtDG..ednssdieaasalkragikiyvvgvgsdegaeallke 146
                 D+S  M+  d +p+rl+  ++a++ ++ +    +p+++vg+  +s+ +++++ +t+d   ++  l++++ +    g  nl ++++ a  +l+   +++g+++ +++v+    +d+  +++aa+ lk+++i + vv+ g d  ++  lk+
  MMETSP0890-20130614|5007_1   2 DTSEYMRNGDFGPSRLESQQDAANLVVGAkmqsNPESSVGVLQMSE-PRVLVSPTDDMGKILGSLSEASVQ----GHLNLVEGVQVAQLALKhrrNKNGGQRLVLFVGSPivADEKALVKAAKVLKKNNIAVDVVQMGNDAQNSVKLKA 145
                 9*************************99753335999*******98.77777899999999999***9986....999999999887777762115558888888887744466678889******************99887444444 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4   2.3e-06    0.0052       4      17 ..     202     215 ..     202     216 .. 0.94
   2 !   12.4   2.0   3.5e-05      0.08       2      17 ..     250     265 ..     249     266 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.3e-06
                 HHHHHHHHHHHHHH CS
  PF02809.15   4 EedLqlALalSlee 17 
                 +++L+lAL++S+ee
  MMETSP0890-20130614|5007_1 202 DPELALALRVSMEE 215
                 89***********9 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.5e-05
                 CCHHHHHHHHHHHHHH CS
  PF02809.15   2 sEEedLqlALalSlee 17 
                  E+  Lq+AL++S+ e
  MMETSP0890-20130614|5007_1 250 NEDTLLQRALEMSMME 265
                 69999*********65 PP

>> PF04056.9  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.4e-08   3.3e-05       3     139 ..       2     134 ..       1     146 [. 0.87
   2 ?   -2.9   0.0       1.7   3.8e+03      77      92 ..     250     265 ..     243     273 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.4e-08
   PF04056.9   3 DlsrameekdlkpsrlavviklleefveeffdqnPisqlgliavkdkkaekltelsGnprkhikaLkslreveakgepsLqnaLelalasLkkvpsh.asrevliifsslstcDPgdiyetidelkkekirvsvigLs 139
                 D+s+ m + d+ psrl+ +  +++  v    + nP s +g++++ + +      l   + +  k L sl e++++g+  L  ++++a+  Lk+     + + +++ ++s   +D   +++  + lkk++i v v+ + 
  MMETSP0890-20130614|5007_1   2 DTSEYMRNGDFGPSRLESQQDAANLVVGAKMQSNPESSVGVLQMSEPRV-----LVSPTDDMGKILGSLSEASVQGHLNLVEGVQVAQLALKHRRNKnGGQRLVLFVGSPIVADEKALVKAAKVLKKNNIAVDVVQMG 134
                 99*****************************************998764.....4455667778899999999*******************986542555566667888889*********************9875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.7
   PF04056.9  77 kgepsLqnaLelalas 92 
                 + ++ Lq aLe+++ +
  MMETSP0890-20130614|5007_1 250 NEDTLLQRALEMSMME 265
                 5678899999999866 PP

>> PF05526.6  Rhodococcus equi virulence-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.23      45     114 ..     124     199 ..      97     205 .. 0.69
   2 ?    0.5   1.0      0.16   3.6e+02      27      72 ..     261     308 ..     250     315 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0001
   PF05526.6  45 vdsaadsvelakaesnl...kvlekkeaeqekqYdVh...GvvvSavvYqklkisvdggktFdGdaGGlsiPGaaa 114
                 ++ a+d v++ ++ +n+   k+   ++ ++e+++ V+   Gvv+S v+     ++++gg t +G aG   +PG++a
  MMETSP0890-20130614|5007_1 124 NNIAVDVVQMGNDAQNSvklKAFVDAAISNENSHLVSvppGVVLSDVLISSPIVQGEGGTTNTGMAGNQEFPGVDA 199
                 3444555555444443300033334555667777765556*********************************986 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.16
   PF05526.6  27 agvanarvlassatsalqvdsaadsvelakae..snlkvlekkeaeqe 72 
                 +++ +a++ +++++ a q +++ +s++   ++  +   ++e++++ q+
  MMETSP0890-20130614|5007_1 261 MSMMEAQQSEAQQSDAQQSEVQQSSSMEIDSNqnKDQPIPEPQQNVQQ 308
                 455566666666666655333333333222220022333344444333 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.8   0.00025      0.56      46     162 ..     202     317 ..     172     323 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00025
   PF06459.7  46 d...afgldvkkeggk.rhdaepgLgdvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaaeaeifkeleiyrkki 162
                 d   a+ l+v+ e+++ r++  ++ g   ++++e+ p  +e +++ +e +++  ++  e+++ + +++e+++   ++s  + +++   ++ ++++k +   ++++ + +   + + y   +
  MMETSP0890-20130614|5007_1 202 DpelALALRVSMEEERaRQQRAASGGTNNDTSKEDDPPIQEHPVQDEENEDTLLQRALEMSMMEAQQSEAQQSDAQQS--EVQQSSSMEIDSNQNKDQPIPEPQQNVQQ---QQSFYDPNF 317
                 233434445555555446555555567778888888888999999998888888888888888888888855555444..45566666777777777776665554444...345555555 PP

>> PF05843.9  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.8    0.0022         5     185     256 ..     243     327 ..     200     336 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0022
   PF05843.9 185 s...........aesskkrkleeedse..kkpdklqraegrqleqqkksesakseeaasqsqkqqqqqpaplpreivallsvLPs 256
                 +            ++  + ++ e +++  +++d+ q+  ++ ++ +  s+++k ++  +++q+ qqqq+++ p+++ ++ls+LP 
  MMETSP0890-20130614|5007_1 243 HpvqdeenedtlLQRALEMSMMEAQQSeaQQSDAQQSEVQQSSSMEIDSNQNKDQPIPEPQQNVQQQQSFYDPNFVNQMLSQLPG 327
                 022222333333222222222222222233333333332333333333333333333444455566666779999999****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1223  (0.0894529); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.70
# Mc/sec: 1249.53
//
Query:       MMETSP0890-20130614|5005_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 548.73
//
Query:       MMETSP0890-20130614|5013_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-19   67.5   0.0    1.9e-18   66.6   0.0    1.5  1  PF01746.16 tRNA (Guanine-1)-methyltransferase
  ------ inclusion threshold ------
       0.09   12.0   9.3       0.14   11.4   6.4    1.2  1  PF09756.4  DDRGK domain
       0.11   12.4   4.6        0.2   11.5   3.2    1.4  1  PF12300.3  Protein of unknown function (DUF3628)
       0.17   12.1   2.6       0.38   10.9   1.8    1.5  1  PF01850.16 PIN domain
        2.2    7.6  10.8          4    6.8   7.5    1.4  1  PF06936.6  Selenoprotein S (SelS)


Domain annotation for each model (and alignments):
>> PF01746.16  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   6.8e-22   1.9e-18       3     186 .]     111     295 ..     109     295 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 6.8e-22
                 HHHH---EEEEEEEGGGGS----..-EE-B-------EE-HHHHHHHHHHHH--EEEE---------HHHHHHHHT-SEEEEE---B---..-GGGGGG-SE........E------------HHHHHHHHHHHHT---------------..-------BS-SB--B--GGGC---TTTTTHHHHHTTTCCCS-S CS
  PF01746.16   3 kaiekelvslelqilrdytenrrntvddelyggglgmvlkaepelealksvsgwevilltpegekfsqekaeeLskkerlvlltgdyegv..lervdddkad........eyiIGgiVdkggekgalvvidaevrleaGvlntaslpldsf..llekpnytrpltlnkvpeiLlsgnhakianWeeallrtipkRk 186
                 +++++e+ sl++qi++++++nr++  + +l ++g+g+ + ++     ++    w +++l+ +  +++ ++  +  + ++  +lt+d+e    +++++  + +        +yiIGgiVd++++kg+    +   + + +++ ta+lp+     +    + + +lt+n+v ++Ll  +  + + W+ a   ++p+Rk
  MMETSP0890-20130614|5013_1 111 MMTQREIISLVQQIMYCHSANRKSHIPSTLRVVGAGSTIATRLAKVHSD---RWLAFYLESD--PLEKALSPHQLSSRQTFYLTSDTEYEllDTDLQNNANQssfginkyVYIIGGIVDRNRHKGI----TKARADSLNIQ-TARLPIGPNnsIAIPKHISPVLTVNHVAQLLLFRQS-NQGSWQGAADAILPERK 295
                 799*************************************996655544...8*******99..88888777767777899**9986665005555555555************************....88888889998.******8776566666669**********9998877.99***999999999997 PP

>> PF09756.4  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.4   4.9e-05      0.14       4      94 ..      18     113 ..      12     130 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXX CS
   PF09756.4   4 gekkakkleekearkqqreaeeeereerkkkeekrekerkee..eekeeekekkkeeeerkeeeekerkeqee.....yeklksefvveeegeekess 94 
                 +++++++ e + a++++r a  +e  e+++k ++++++  e+   ++  e + ++ee+erk+ + + ++e+++     + + +s++v++  g e++++
  MMETSP0890-20130614|5013_1  18 ARRRQERYEYRIAKRKKRDAILKE--EKRRKTAEKNAKLVESqaSRNPFELASEREEAERKQLKRRLAREANDaahvaLAAQNSTIVLDCGGFEAMMT 113
                 334445555555666666666664..444444444444444323666677777777777777777777766651111144445555555555555555 PP

>> PF12300.3  Protein of unknown function (DUF3628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.2   7.3e-05       0.2      81     153 ..      30      99 ..       7     104 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.3e-05
   PF12300.3  81 gegrsrgprkprvegerdaaadaaetpvvaaaaartpavvaaeGeekprkrrrrrrgrpvegaesvvaaagag 153
                 +++++r      +  e+   ++  +++ v  +a+r+p + a e ee+ rk+ +rr +r  + a  v  aa ++
  MMETSP0890-20130614|5013_1  30 AKRKKR---DAILKEEKRRKTAEKNAKLVESQASRNPFELASEREEAERKQLKRRLAREANDAAHVALAAQNS 99 
                 444444...5556677777778888999********************************9999997777654 PP

>> PF01850.16  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.8   0.00014      0.38      44     105 ..      30     100 ..      23     104 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
                 HHHH............-TTTCHHHHHHHHHHHCCSEEE-..HHHHHHHHHHHHHCCS-HHHHHHHHHHHHHT- CS
  PF01850.16  44 vlrr...........kskrlkaaellelllllsalkilpideevaeeaaelaekyglrpnDalilAtAkahgi 105
                 + r+           ++  +k+a+l+e++   + +++   +e+  +e ++l++++++  nDa ++A+A ++  
  MMETSP0890-20130614|5013_1  30 AKRKkrdailkeekrRKTAEKNAKLVESQASRNPFEL--ASEREEAERKQLKRRLAREANDAAHVALAAQNST 100
                 4444666666664333444444444444444444444..56999999999999999************98865 PP

>> PF06936.6  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.5    0.0015         4      82     142 ..      10      71 ..       4      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0015
   PF06936.6  82 qea.leaarlrmqeeldakaakfkekkkqleeekrrqkiedwdrlqeGksykvsaklaeeat 142
                 q+a +  + +r qe  + ++ak k++   l+eekrr+  e+  +l e +++++  +la+e  
  MMETSP0890-20130614|5013_1  10 QSAmMSKSARRRQERYEYRIAKRKKRDAILKEEKRRKTAEKNAKLVESQASRNPFELASERE 71 
                 555156788999*************************************9998887776643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:00.76
# Mc/sec: 1084.67
//
Query:       MMETSP0890-20130614|5014_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-18   65.5   0.0    3.6e-18   64.8   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.1e-14   51.9   0.0    8.2e-14   51.2   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.9e-10   39.7   0.0    4.8e-10   39.0   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.037   13.4   0.2       0.14   11.5   0.1    1.8  2  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
       0.11   12.2   0.0       0.18   11.5   0.0    1.3  1  PF02777.13 Iron/manganese superoxide dismutases, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.3e-21   3.6e-18       1      70 []     106     175 ..     106     175 .. 0.99

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 1.3e-21
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 +fV+n+p+dv e+eL++lF+ +G+++++ + +d+ grskg a ++++++ +a +A+e++n+ +++gr+l+
  MMETSP0890-20130614|5014_1 106 IFVSNIPYDVLEKELRQLFGSIGRVVDVIVEYDNSGRSKGKATIQMDNSKNALRAIETYNENTIDGRTLR 175
                 8******************************************************************996 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0     3e-17   8.2e-14       1      69 []     106     175 ..     106     175 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 3e-17
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 ++v+++p++v e +lr++f++ g+v +v + ++  gr++g A +++++ ++A +a++ +n   ++grt+r
  MMETSP0890-20130614|5014_1 106 IFVSNIPYDVLEKELRQLFGSIGRVVDVIVEYDNSGRSKGKATIQMDNSKNALRAIETYNeNTIDGRTLR 175
                 89****************************99855*************************999*****97 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.7e-13   4.8e-10       1      54 [.     120     177 ..     120     178 .. 0.96

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.7e-13
   PF13893.1   1 LyklfskfGkverikifrkk....ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 L++lf   G+v+++++ +++    +g+A +++d+ ++A +a+e++n++ ++g+tL++ 
  MMETSP0890-20130614|5014_1 120 LRQLFGSIGRVVDVIVEYDNsgrsKGKATIQMDNSKNALRAIETYNENTIDGRTLRIT 177
                 789*******************999*******************************96 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.3e-05      0.14      99     137 ..      42      80 ..      29      94 .. 0.74
   2 ?   -0.5   0.0      0.25     7e+02      46      74 ..     140     168 ..     116     182 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-05
                 EE----EEE---BB---ECE---E-EE------EES-TT CS
  PF01071.14  99 lvdgktvkplpaaqdhkrvlegDegpnTGGmGayspapv 137
                  vd ++ k+  +aq  +r +e D+ +nTGG G  s    
  MMETSP0890-20130614|5014_1  42 TVDASRQKRRGQAQSARRGMEIDQEMNTGGAGNSSSRTK 80 
                 47888889999*********************9885544 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.25
                 ---------EEESSHHHHHHHHHHHCTS- CS
  PF01071.14  46 dglaagKgvivakseeealkavkeilekk 74 
                 +g + gK +i ++++++al+a++   e++
  MMETSP0890-20130614|5014_1 140 SGRSKGKATIQMDNSKNALRAIETYNENT 168
                 56677888888888888888887665555 PP

>> PF02777.13  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.5e-05      0.18       3      59 ..     112     168 ..     110     180 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.5e-05
                 ----HHHHHHHH---HHHHHHHHHHHHHT------EEEEEETTTTEEEEEE-STTTB CS
  PF02777.13   3 PkgelaeaieedfGsfdefkeefeaaaaalfgsgWawlvkdkeegklkivktenqdn 59 
                 P + l++++ + fGs+ ++ + + +  ++  + g a + +d++++ l+ ++t+n+++
  MMETSP0890-20130614|5014_1 112 PYDVLEKELRQLFGSIGRVVDVIVEYDNSGRSKGKATIQMDNSKNALRAIETYNENT 168
                 78899************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 776.75
//
Query:       MMETSP0890-20130614|5019_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 428.82
//
Query:       MMETSP0890-20130614|5031_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.8   0.9      0.047   13.6   0.6    1.0  1  PF12316.3 Segment polarity protein dishevelled (Dsh) C terminal
       0.21   11.0   3.5       0.35   10.3   2.5    1.4  1  PF11176.3 Protein of unknown function (DUF2962)


Domain annotation for each model (and alignments):
>> PF12316.3  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   6.9e-06     0.047     113     181 ..      18      83 ..       6      85 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.9e-06
   PF12316.3 113 sslsrsateeapserssaasseksvrsslserssassyaapGlpllynlaklvmkvavlssapPGaPpv 181
                  ++s  +++++  ++++++ +e+  +s l+++++ s+ ++pG p+  +  k   +++   + pPG Pp+
  MMETSP0890-20130614|5031_1  18 RDMS--EMRRRRRGENEEKEREEIIESVLKKEKTRSEKTSPGRPPA-QIKKPRGRPPAQIKKPPGRPPA 83 
                 3333..334444445555678888999***************7765.566666777777788*****96 PP

>> PF11176.3  Protein of unknown function (DUF2962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.5   5.1e-05      0.35      82     116 ..      16      50 ..       4      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHGGGT---TTHHHHHHHHHHHHHHH CS
   PF11176.3  82 ndeeleqlkserrkgrppskreevleeklekeeke 116
                 ++  +++++++rr  + + +ree++e+ l+ke+  
  MMETSP0890-20130614|5031_1  16 SNRDMSEMRRRRRGENEEKEREEIIESVLKKEKTR 50 
                 456799**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       855  (0.0625366); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.44s 00:00:00.83 Elapsed: 00:00:00.76
# Mc/sec: 271.17
//
Query:       MMETSP0890-20130614|5041_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   26.4   0.6     0.0077   16.7   0.0    2.9  3  PF08238.7 Sel1 repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.065   8.9e+02      33      38 ..       1       6 [.       1       7 [. 0.89
   2 !   16.7   0.0   5.6e-07    0.0077       1      22 [.       8      26 ..       8      32 .. 0.88
   3 !    6.0   0.0    0.0013        17      19      30 ..      59      70 ..      55      70 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.065
   PF08238.7 33 kAAeqG 38
                +AA+qG
  MMETSP0890-20130614|5041_1  1 RAADQG 6 
                8****9 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 5.6e-07
   PF08238.7  1 aeAqynLGlyymylnGlgGvpk 22
                a Aqy LG  y y nG+ Gv++
  MMETSP0890-20130614|5041_1  8 AVAQYSLG--YSYSNGY-GVKQ 26
                67******..******9.9*98 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0013
   PF08238.7 19 GvpkdpekAleW 30
                Gv+++++ AleW
  MMETSP0890-20130614|5041_1 59 GVEQNYDTALEW 70
                8*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 215.37
//
Query:       MMETSP0890-20130614|5042_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-13   50.4   1.8    1.1e-09   37.6   0.2    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.063   13.4   0.1       0.07   13.2   0.1    1.2  1  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.2   1.6e-13   1.1e-09       5      41 .]       2      38 ..       1      38 [. 0.94
   2 !   12.7   0.1   1.1e-05     0.076       1      18 [.      40      57 .]      40      57 .] 0.92

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.6e-13
                HHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  5 kqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41
                k ++ eaGa+ppLv+LL+sg    + +Aa+AL+NL+a
  MMETSP0890-20130614|5042_1  2 KVTIAEAGAIPPLVNLLTSGTAVAKVYAAAALWNLTA 38
                56899******************************96 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.1e-05
                CHHHHHHHHHCHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLv 18
                +++n  a+ eaGa+ppLv
  MMETSP0890-20130614|5042_1 40 NDQNEVAIAEAGAIPPLV 57
                6889999**********8 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     1e-05      0.07      27      59 ..       5      40 ..       3      57 .] 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
   PF13646.1 27 lgseealpaLlelLkdsdpevRraAaeaLgkl...g 59
                ++++ a+p+L+ lL++  +  +  Aa aL +l    
  MMETSP0890-20130614|5042_1  5 IAEAGAIPPLVNLLTSGTAVAKVYAAAALWNLtanN 40
                678899***********************9984331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 216.81
//
Query:       MMETSP0890-20130614|5045_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-09   36.7   0.2    7.9e-09   35.6   0.1    1.7  1  PF08911.6 NUP50 (Nucleoporin 50 kDa)


Domain annotation for each model (and alignments):
>> PF08911.6  NUP50 (Nucleoporin 50 kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   5.8e-13   7.9e-09       8      65 ..      10      62 ..       3      69 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 5.8e-13
   PF08911.6  8 qLtkdnwdee.de.aeeagtfkkASeevLkkRkIkkakrrkkagasssssesksafkgFs 65
                qL k+   e  ++  eeag fk+ASee+ kkR+I+ka+r         +++   + ++F+
  MMETSP0890-20130614|5045_1 10 QLRKEEAYEAlEStVEEAGVFKRASEETIKKRRIVKARRPP-------PASPLNSENPFA 62
                566666644456679**********************9953.......444444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 535.19
//
Query:       MMETSP0890-20130614|5037_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 552.20
//
Query:       MMETSP0890-20130614|5048_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   17.0   1.7     0.0071   15.9   1.2    1.5  1  PF12301.3 CD99 antigen like protein 2
     0.0059   16.4   1.6       0.29   10.9   0.1    2.4  2  PF09351.5 Domain of unknown function (DUF1993)
  ------ inclusion threshold ------
        4.3    7.1   6.1        2.9    7.6   1.3    2.2  2  PF13373.1 DUF2407 C-terminal domain


Domain annotation for each model (and alignments):
>> PF12301.3  CD99 antigen like protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.2   1.5e-06    0.0071      19     113 ..     245     330 ..     211     336 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.5e-06
   PF12301.3  19 kttkkpatpkkpsegddfdLedAldpdndgkekpkpkpkpqpepknpgssggsfsDsDLeDvsedgeykpdkgkggggggssnadtdeneeeeae 113
                 + t+kpa+     ++  +   dAl+++n+ ++  +++p++++     +++  +  D+DL++ +++++ +p  +    +   s+ ++ +n+ e++e
  MMETSP0890-20130614|5048_1 245 PRTPKPAEADHCHQE--M-EHDALEKRNKLTQPGRDSPQEEQR----QEETQQNRDHDLDNHQQRDSSRPSDNLVSAAA--SAVANMTNSPEQQE 330
                 344444444444444..2.269********9888877777744....67899999*************99988755544..33334444444444 PP

>> PF09351.5  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   6.5e-05      0.29      60     132 ..     123     195 ..      75     198 .. 0.88
   2 !    4.6   0.1    0.0056        26      80     118 ..     224     262 ..     204     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.5e-05
                 HHHHHTTT------------SS----HHHHHHHHHHHHHS----H...HHHCSEEE----EEEEEHHHHHHHT CS
   PF09351.5  60 akeavarLageevpsledtetsfaelqariaktlaylekldeaqldaaeereitlklggkeleltgeeyllsf 132
                 ++e+ + +a ++ +  +d  +++++l+++ ++ l+ ++ +d+++ld++e+ e +l+++++  +++g+   l+f
  MMETSP0890-20130614|5048_1 123 TEEFSTPIAAKKKKISNDPLEKLEDLRKQYNDILQQMDIVDRRALDEHETIESKLEAKSQVAQMNGRLDKLQF 195
                 455556666666667789999********************************************98666666 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0056
                 SS----HHHHHHHHHHHHHS----H...HHHCSEEE--- CS
   PF09351.5  80 tsfaelqariaktlaylekldeaqldaaeereitlklgg 118
                 ++++ l+ari ++ a+l+++++++ + ae+ + + ++++
  MMETSP0890-20130614|5048_1 224 ADIEHLRARIGQVHAHLSTISPRTPKPAEADHCHQEMEH 262
                 67899******************9998888877766555 PP

>> PF13373.1  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.078   3.6e+02      15      40 ..     144     170 ..     141     211 .. 0.67
   2 ?    7.6   1.3   0.00064       2.9      14      86 ..     224     299 ..     220     315 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.078
   PF13373.1  15 evedLRrqFlsiygd....seetedtipde 40 
                   edLR+q+ +i  +    +   ++ ++++
  MMETSP0890-20130614|5048_1 144 KLEDLRKQYNDILQQmdivD---RRALDEH 170
                 5789*****99999753331...2222222 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00064
   PF13373.1  14 eevedLRrqFlsiygdseetedtipdeeneqrelrelEerWiesgsnsvat....aekaeaaesedqenaevdldes 86 
                 +++e+LR +  +++++ ++ + + p+++++++  +e+E + +e+ ++  ++    + ++e++++e+q+n + dld++
  MMETSP0890-20130614|5048_1 224 ADIEHLRARIGQVHAHLSTISPRTPKPAEADHCHQEMEHDALEKRNKL-TQpgrdSPQEEQRQEETQQNRDHDLDNH 299
                 79**************998888899999999999***********993.3324332222233333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1489  (0.108909); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.90
# Mc/sec: 902.63
//
Query:       MMETSP0890-20130614|5050_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   13.3   0.2       0.25   11.2   0.1    2.0  2  PF12564.3 Type III restriction/modification enzyme methylation subunit


Domain annotation for each model (and alignments):
>> PF12564.3  Type III restriction/modification enzyme methylation subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.12   1.6e+03      32      38 ..      25      31 ..      15      43 .. 0.55
   2 ?   11.2   0.1   1.8e-05      0.25       7      32 ..      73      98 ..      69     100 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.12
   PF12564.3 32 nkFiefl 38
                 +F++ +
  MMETSP0890-20130614|5050_1 25 PDFVSKI 31
                5554433 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1.8e-05
   PF12564.3  7 klLLenekikkrFfkkidgiliFkin 32
                k+ L+ ++ k+ + k++++++iFk+ 
  MMETSP0890-20130614|5050_1 73 KFKLGVQETKNCYAKNVNDTEIFKVX 98
                55578899****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 644.54
//
Query:       MMETSP0890-20130614|5052_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    9.1   5.2          2    8.9   3.6    1.1  1  PF09676.5 Type IV conjugative transfer system lipoprotein (TraV)
        4.5    7.6   6.0          5    7.4   4.1    1.0  1  PF04520.8 Senescence regulator


Domain annotation for each model (and alignments):
>> PF09676.5  Type IV conjugative transfer system lipoprotein (TraV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.6    0.0003         2      34      85 ..       7      61 ..       1      75 [. 0.60

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0003
   PF09676.5 34 akpaaaglprlaegnsasasaqsvtvaaasaaasktarplplaalesk...PlRt 85
                +++++ ++++ ++ n++++ +qs+ ++++s+++++t++p +  +++s+   PlR+
  MMETSP0890-20130614|5052_1  7 QQNQSRAQQNHNHRNTVASIQQSTLAPPHSSSSTHTITPTNPTDSSSHtnvPLRS 61
                2222233333334448888888999999999999999888776666668996654 PP

>> PF04520.8  Senescence regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.1   0.00073         5      25      86 ..       6      67 ..       1      73 [. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00073
   PF04520.8 25 eeskrssssssalkastaaaasssaraipkiekgeraaaksakaassapvnvPdwskilksr 86
                +++++s+ +++++ ++t a++++s  a p+ ++  ++   +++  ss + nvP +s + +s 
  MMETSP0890-20130614|5052_1  6 NQQNQSRAQQNHNHRNTVASIQQSTLAPPHSSSSTHTITPTNPTDSSSHTNVPLRSVRIQSP 67
                4555666666667777777788888888877788999999**************99887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 296.69
//
Query:       MMETSP0890-20130614|5054_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-10   39.2   4.1    4.5e-09   35.6   0.4    2.2  2  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0014        19      33      41 .]       2      10 ..       2      10 .. 0.89
   2 !   35.6   0.4   3.3e-13   4.5e-09       1      40 [.      12      51 ..      12      52 .. 0.98

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0014
                HHHHHHHHT CS
  PF00514.18 33 awALsNLaa 41
                a+AL+NLa+
  MMETSP0890-20130614|5054_1  2 AGALWNLAD 10
                79*****96 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 3.3e-13
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                ++enk ++ ea a+ pLv+LL+sg     ++Aa+AL+NLa
  MMETSP0890-20130614|5054_1 12 NDENKVTIAEARAIAPLVNLLTSGTAIAIKNAAGALWNLA 51
                79*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 225.33
//
Query:       MMETSP0890-20130614|5047_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.72
# Mc/sec: 482.60
//
Query:       MMETSP0890-20130614|5057_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-10   38.9   0.0    7.2e-10   38.4   0.0    1.3  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.3e-14   7.2e-10      10      75 ..     210     275 ..     195     276 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.3e-14
                 CECTTEEEEECTTEEEETTTTTTTHTSTTHHH.HTT---BHHHHHHHHHHH.HHHHHHHHGCGBE--B CS
  PF00173.23  10 hnkekdswvvirgkVYDvskflkdhpggasai.lafaGkDaTeafenashs.eaaekllekyyrvGrl 75 
                  +++ d ++vi++ V+Dvs++l +hpgg+  i  ++ + DaT  f + +h   +   +l++ +++G+l
  MMETSP0890-20130614|5057_1 210 TKQRSDTLLVIDNMVLDVSRWLHEHPGGSTIIpEQALNVDATVMF-ELYHAsRNSFLYLKE-FYIGEL 275
                 447889**********************888834566********.666664777778888.****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:01.01
# Mc/sec: 775.85
//
Query:       MMETSP0890-20130614|5058_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:01.01
# Mc/sec: 417.58
//
Query:       MMETSP0890-20130614|5060_1  [L=1326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-19   68.6   0.0      1e-06   28.3   0.0    4.5  4  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.15   11.9   0.2       0.31   10.9   0.1    1.5  1  PF11075.3  Protein of unknown function VcgC/VcgE (DUF2780)


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.5e-10     1e-06       1      82 [.     253     332 ..     253     335 .. 0.93
   2 ?   -1.2   0.0      0.25   1.7e+03      21      71 ..     442     500 ..     425     507 .. 0.64
   3 !   18.7   0.0   1.5e-07     0.001       2      84 ..     770     858 ..     769     859 .. 0.91
   4 !   15.8   0.1   1.2e-06    0.0084       2      84 ..     941    1030 ..     940    1031 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.5e-10
                 EEEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTE...EEEEEEECHSSSCSEE-- CS
  PF00168.25   1 LkvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelae...leleVkdedrfgkddflG 82 
                 L++++++A++L +++  gt d+y  vs++g +   + T+v + t++P++ ++++++   + l++   + ++Vkd+++++    lG
  MMETSP0890-20130614|5060_1 253 LRCHLFQARHLTATEADGTLDAYLAVSFSGLDP--QPTEVQRETTDPTFYKTIVLDCALPTLHYaplVFISVKDYSTDR---CLG 332
                 78999*************************776..9********************999999999*9999*****9987...666 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.25
                 -EEEEEEEECTTE..EEEEE.--BSS-.SSEEEEEEEEEEESCGGGTE....EEEEEEE CS
  PF00168.25  21 dpyvkvslggaks..kkkrT.rviknt.lnPvWnekftfevvaeelae....leleVkd 71 
                  py k  l +      ++ T r +k t  +P + +++ ++v+ +e       ++++V d
  MMETSP0890-20130614|5060_1 442 LPYTKFVLPKTGGdtDTATTnRSKKPTpADPNYLQHIRMDVEIPEKPIfaspIHITVRD 500
                 58888888886666533444144555578888888888875544433344588888877 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 1.5e-07
                 EEEEEEESS--S-S.....TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSC.SEE---E CS
  PF00168.25   2 kvkvieAknLpnkd.....kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgk.ddflGea 84 
                 ++ vi++ +L ++d       g+sdpy +++lg++++   r + i++  +    + ++++ + +  ++l+++V d+d++g  dd++G++
  MMETSP0890-20130614|5060_1 770 RLYVIRGVHLTPMDpglmgAPGKSDPYLRIDLGKNQVFNDRENYIPDAVDVDLYKVIEMSTELPGDSQLKIDVVDYDDIGFsDDLIGTT 858
                 5789*************99999************999779********99999999**9977777777**********99889***986 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 1.2e-06
                  EEEEEEESS--S-S.TSSSS-EEEEEEEECTTEEEEEE--BSS-....SSEEEEEEEEEEESCGGGTE.....EEEEEEECHSSSCSEE---E CS
  PF00168.25    2 kvkvieAknLpnkd.kngtsdpyvkvslggakskkkrTrviknt....lnPvWnekftfevvaeelae.....leleVkdedrfgkddflGea 84  
                  +v v +A++  n+d  ++  d y+k+++++ +   + T ++ +      +  W  kf +e   ++++      l+++ +d+d ++ +d++ ea
  MMETSP0890-20130614|5060_1  941 RVVVWKARDMVNMDtITNMNDLYIKCQMEDTEA--QCTDIHWRAkggkGSFNWRMKFDVE-LGHNTKVmrfphLKIQAWDQDIIKWNDMIAEA 1030
                  7999**********656699**********777..6776665543311556666777777.5555555789*************999999886 PP

>> PF11075.3  Protein of unknown function VcgC/VcgE (DUF2780)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.6e-05      0.31      27      77 ..     595     645 ..     556     651 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.6e-05
   PF11075.3  27 salkeaaaqaaataetsdLvsslssqlgvtqeqaaGGlGalLalAqsnLsg 77 
                 ++++ ++++aa++a t++L   +++q +v ++  aG +GalL + +++L g
  MMETSP0890-20130614|5060_1 595 ASTTITTTEAAVEAPTAQLEYLVKKQTPVEADTGAGVFGALLHVNKNELAG 645
                 3455566677777777888888899***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       936  (0.0684611); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.96u 0.39s 00:00:02.35 Elapsed: 00:00:01.14
# Mc/sec: 2763.10
//
Query:       MMETSP0890-20130614|5068_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-17   63.0   0.2    3.7e-17   62.0   0.1    1.5  1  PF00538.14 linker histone H1 and H5 family
      2e-09   37.4  21.5    2.4e-09   37.2  14.9    1.1  1  PF07382.6  Histone H1-like nucleoprotein HC2
  ------ inclusion threshold ------
       0.35   10.2   5.2       0.51    9.7   3.6    1.2  1  PF05568.6  African swine fever virus J13L protein


Domain annotation for each model (and alignments):
>> PF00538.14  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.1   8.2e-21   3.7e-17       4      77 .]       2      67 ..       1      67 [. 0.91

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 8.2e-21
                -HHHHHHHHHCCTTTT----HHHHHHHHHCCTTTS--STTHHHHHHHHHHHHHH---EE---..------EESS CS
  PF00538.14  4 pyseMiveaikalkerkGsSvqaikKyieanykveinasnlasllklaLkkgvksGeLvqvkgtGasGsfklak 77
                +y+eMi+eai+a   rkG S +a+kKyi+++yk ++n      ll+ aLk+gv++++L+q k     G fk++k
  MMETSP0890-20130614|5068_1  2 TYIEMITEAITAEGGRKGCSLPALKKYIQTEYK-DLNF--QPHLLRAALKNGVEKKTLIQNK-----GHFKVSK 67
                79******************************7.4444..45668999**************.....****987 PP

>> PF07382.6  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2  14.9   5.4e-13   2.4e-09      71     149 ..      47     123 ..      25     152 .. 0.59

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.4e-13
   PF07382.6  71 vkkavakkvvakk....kvakKavAKKaaakKvvakkvvakKtvakkaaaakKpaakkavakkaaarKaaakKavaKkaastc 149
                 +k  v kk+  +     kv k a+ KKaa  K +akk + kK +akk+++akK+ akk     aaa+K+aakK++ +++   c
  MMETSP0890-20130614|5068_1  47 LKNGVEKKTLIQNkghfKVSKAAAPKKAATEKPAAKKPATKKPAAKKTTTAKKTTAKKP----AAAKKPAAKKTSCQETS--C 123
                 33333333333323444555555556666666666666666666666666666666665....45555555555544443..3 PP

>> PF05568.6  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.6   0.00011      0.51      88     141 ..      65     118 ..      54     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00011
   PF05568.6  88 iakpagastasagkpvtdrpvtnrlvadkpvtnkpvtdrlvmaaggpeaasata 141
                 ++k a    a++ kp  ++p+t++  a+k +t k  t +   aa  p+a  +++
  MMETSP0890-20130614|5068_1  65 VSKAAAPKKAATEKPAAKKPATKKPAAKKTTTAKKTTAKKPAAAKKPAAKKTSC 118
                 688888899999999999999998889999999888888888888888765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       871  (0.0637068); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.78
# Mc/sec: 525.36
//
Query:       MMETSP0890-20130614|5079_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-18   66.8   0.0    1.3e-18   66.8   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    2.4e-08   33.5   0.0    1.8e-05   24.2   0.1    1.9  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.9e-22   1.3e-18       3      66 ..       2      64 ..       1      65 [] 0.82

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.9e-22
   PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
                Ig++aFy+c+ lt++t+p  +t+Ig  aF +c sl++itl   lt+ig++aF++c+sl+++ +p
  MMETSP0890-20130614|5079_1  2 IGDFAFYGCTGLTQLTLPAGLTTIGIGAFIGC-SLNQITLRVGLTSIGDNAFQDCTSLSQLILP 64
                88888888888888888888888888888888.8888888888888888888888888888876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.2e-05     0.084      16      56 ..       2      40 ..       1      43 [. 0.92
   2 !   24.2   0.1   2.7e-09   1.8e-05       2      56 ..      12      63 ..      11      64 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
   PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                i+d aF g++ L+ L L    l++i  +af g+ sL ++ L
  MMETSP0890-20130614|5079_1  2 IGDFAFYGCTGLTQLTLP-AGLTTIGIGAFIGC-SLNQITL 40
                7899**************.**************.9988887 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.7e-09
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 L+ L L    l++i+ gaF g+s L  + L    l+si ++af++++sL++L L
  MMETSP0890-20130614|5079_1 12 GLTQLTLPAG-LTTIGIGAFIGCS-LNQITLR-VGLTSIGDNAFQDCTSLSQLIL 63
                69999999**.***********97.*******.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 232.48
//
Query:       MMETSP0890-20130614|5081_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 926.59
//
Query:       MMETSP0890-20130614|5080_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-40  137.4   0.0    5.4e-40  137.1   0.0    1.1  1  PF04641.7 Replication termination factor 2


Domain annotation for each model (and alignments):
>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0     4e-44   5.4e-40       1     256 [.       1     265 [.       1     279 [. 0.77

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 4e-44
   PF04641.7   1 mGnDGGsipkRdeLvke.....kkkkekv.......................dkeeekearwklCaLskepLekPivadrlGkLYnkdavleaLldkskeealskalshikglkdvvelkltknpaeeeskaarkdtkeapfiCpvtglelngktkfvalrkcGcVfsekalkevkeekvCpvCn.kefkeedvvplnptke.elellkarleeekakkkkkkkkkkkkkaeakgekaeaeaksksskeesskagkkkekkklkkkkslaekneksevykslftss 256
                 mG+DGG i+  ++ ++      +                             d+++ ++ r+++C Ls e L+ Pivad+lG+LYnk a+le L ++     l+++ls+i+glkd+ +++lt+  +e+        +++   iCpvt+  l+g   fv  ++ G+++s+ al  +      ++C+  + +e+d+++l p+++     l++r+++++++   k k+k+kk + +k+ +++a+++++s+k   + a ++ ++ +++ k+++ +k e+ + ++++f+ +
  MMETSP0890-20130614|5080_1   1 MGGDGGVIAVKRAWMRGthessH-----KsskqsggqnfgagmtggdaenrvDPRKMRSMRVRTCHLSSEILRAPIVADELGNLYNKLAILETLSER----ILPERLSYIRGLKDLRDCHLTPVHEES-------GESNPVTICPVTNYPLDGSRPFVLFWSTGWILSQAALDSMG-LA-SLQCEyGPCEEHDIIQLFPEDDvLTIDLQQRMTRRREATSLKRKEKRKKRQ-DKSPNHAAHEAPRSKKP--TIALSDAARIASAAKEAVRQKREEDNSLNTIFHDE 265
                 9*******999999999655431.....334457899999999999999999*********************************************....89*******************996444.......5678999*********************************9.33.368872578999**********66667999999999887777776666655.44444444444443322..23333333444444444444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.79
# Mc/sec: 888.78
//
Query:       MMETSP0890-20130614|5072_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   63.3   0.3    1.7e-16   60.4   0.2    2.0  2  PF09286.6  Pro-kumamolisin, activation domain
    3.2e-14   52.6   1.1    4.8e-14   52.0   0.7    1.3  1  PF00082.17 Subtilase family


Domain annotation for each model (and alignments):
>> PF09286.6  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   2.5e-20   1.7e-16       2     143 .]      27     178 ..      26     178 .. 0.88
   2 ?    0.3   0.0     0.085   5.8e+02      55      99 ..     428     474 ..     424     491 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 2.5e-20
   PF09286.6   2 gwtkrgraapsellpvriaLkqrn..lekledfledvsdP.....kspnygkhltaeevaelfapseetidaVrawLess.Gitasrvsdtkdwiefs.atveqaerlLktsfeayshk.dggsslartdepysvPeslknhvdfihpldnf 143
                 +w+  +r++++++l++ ++Lkq     +++e+ l ++++P     k+p+ygk+l++eev e++++s+e+id+V+++  ++   ++ ++++ k++++++ ++++ +e++L t++++ shk  +++ l+r+++py++P+ ++ hv+++  l++f
  MMETSP0890-20130614|5072_1  27 NWVVGERVSEEDTLNLDFYLKQDEddQKNFEKELLELASPvlngeKNPKYGKWLSHEEVVEKLSASREAIDSVLDFAANQlQAQDIHINKLKSIVKVKnVKARIVEEALSTRLHHHSHKtYTKVDLIRATAPYHLPARVAVHVSLVGELIRF 178
                 79999****************9875579999*****99998877789****************************97654134455578899999995389999*************8867888********************99877766 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.085
   PF09286.6  55 elfapseetidaVrawLessGitasr..vsdtkdwiefsatveqaer 99 
                 + f  +  ++d+V a+L+  ++ +s+   +d++ +  +sa +++++ 
  MMETSP0890-20130614|5072_1 428 DEFDTASFQTDEVSAYLKTDDLPKSSlyNADGRAYPDVSALAGEVNP 474
                 56777777899***********9999877777777788888887765 PP

>> PF00082.17  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.7     7e-18   4.8e-14      96     238 ..     325     507 ..     270     521 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 7e-18
                 CCHHHH.-S-SEEEE----BH..HHHHHHHHHHHHHHHHHHCC---EEEEE---......---BTTTT......GCCTTTTTTTEEE--BE......................................CCS---TCEEEETTB.....----BB----SSEGG--...-EEEEE-S-TTCHHHH---CCCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx......xxxxxxxxxxxxxxxxx......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00082.17  96 ieeaakedkadvinmslGeds..gtnssdssaileaavqaanesgvlfVvsaGN......sgpsgstt......vgsPgtsksvitVgayt......................................dsdkladfsnyggpsadgrlkpdivapGgniastvntsdkygyqsmsGTSmAsPhvagaaAlllqa 238
                 i++   +d ++v+++s+G+d+  +t ss +++ +++a+ +  + gv++ ++aG+      +              ++P++s  v++Vg+++                                      ++d+l++ s y   +adgr+ pd++a +g++   + +++++++ +  GTS+A+P vag++A++ ++
  MMETSP0890-20130614|5072_1 325 IQDM--DDPPKVVSVSYGNDEaqQTGSSFMES-VSSAFMKLGSMGVTILFAAGDqgvwgrE------GygtsfnPDFPAGSPYVTAVGGTDfatestigdettwedggsgfsdefdtasfqtdevsaylKTDDLPKSSLY---NADGRAYPDVSALAGEVNPYLISYKDGTFSAVAGTSAACPVVAGMLAQINDK 507
                 3332..7889*********7776666666666.889999***************5554443......344466699***************8888888888888888888887777777766555555555677777777...668**************98887777799*******************99774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:00.77
# Mc/sec: 1745.92
//
Query:       MMETSP0890-20130614|5083_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-11   42.5  13.3    6.3e-06   25.5   2.0    3.3  3  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.019   2.6e+02       9      17 ..     372     380 ..     370     382 .. 0.85
   2 !   25.5   2.0   4.6e-10   6.3e-06       1      22 [.     423     444 ..     423     445 .. 0.96
   3 !   20.8   0.8   1.4e-08   0.00019       1      22 [.     446     467 ..     446     468 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.019
                 EEE-EEEB- CS
  PF02493.15   9 krhGkGvyt 17 
                 +rhG+G+++
  MMETSP0890-20130614|5083_1 372 RRHGSGRCR 380
                 79****986 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 4.6e-10
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 Y+G+Wk G++hGkG+y +++G 
  MMETSP0890-20130614|5083_1 423 YDGHWKFGRKHGKGKYFFASGA 444
                 9*******************95 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 1.4e-08
                 EE-EEETTEEE-EEEB------ CS
  PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG+W  Gk+ G G yt  dG 
  MMETSP0890-20130614|5083_1 446 YEGQWDAGKMVGIGFYTTNDGK 467
                 ********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.67
# Mc/sec: 1713.22
//
Query:       MMETSP0890-20130614|5090_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-09   37.8   0.1    1.6e-09   37.1   0.1    1.4  1  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   1.2e-13   1.6e-09      30      89 ..      88     148 ..      59     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.2e-13
  PF02225.17  30 sdvkGkIvlv.rrgvctfsekaevaqeaGAkgviiinpseaalpggtkvgpsdvgiPvvvi 89 
                 + ++G+ ++v r g+c+f++k+ vaq++GA++vi+ n +++ +  ++++++  ++iP+v+ 
  MMETSP0890-20130614|5090_1  88 RRLSGMAAIVnRGGGCGFGDKVLVAQKLGAAAVIVLNHKDKEPERMMADPAFRINIPAVMA 148
                 67899*****99999**********************999999***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 581.97
//
Query:       MMETSP0890-20130614|5091_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.2   0.1      0.024   13.9   0.1    1.1  1  PF00941.16 FAD binding domain in molybdopterin dehydrogenase


Domain annotation for each model (and alignments):
>> PF00941.16  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.8e-06     0.024      52      81 ..      27      58 ..      24      68 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.8e-06
                T-GGGC--EE-.--EEEE----BHHHHHHH.H CS
  PF00941.16 52 gipeLkeieet.eggleiGAavtlselaas.e 81
                + + L +i++t ++gl iGA+++++++a++ e
  MMETSP0890-20130614|5091_1 27 KTESLADIKTTaQEGLDIGATASHTDIAEIvE 58
                5678999999988***************9843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.73
# Mc/sec: 236.35
//
Query:       MMETSP0890-20130614|5094_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   43.0   0.0    3.9e-11   42.2   0.0    1.3  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.4e-06   27.8   0.0      8e-05   22.2   0.0    2.2  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.2e-05   25.1   0.0    1.8e-05   24.5   0.0    1.3  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   8.6e-15   3.9e-11       1      64 [.      72     131 ..      72     134 .. 0.95

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 8.6e-15
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkkl 64 
                 lf  nLp +++++ L  lF+++ +++++++v+     +kg+af+eF++  +a  Al+ lng  l
  MMETSP0890-20130614|5094_1  72 LFAQNLPDECNQNMLVILFQQYTGYKEVRMVPG----KKGIAFIEFADDVQASLALAGLNGFSL 131
                 5778****************************7....************************865 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.011        50      42      56 .]       2      16 ..       1      16 [. 0.89
   2 !   22.2   0.0   1.8e-08     8e-05       4      45 ..      89     130 ..      87     142 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.011
   PF13893.1 42 ngvklygktLkveys 56
                +g ++y+k++++ ++
  MMETSP0890-20130614|5094_1  2 QGFPFYDKPMRIAFA 16
                7889********997 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.8e-08
   PF13893.1   4 lfskfGkverikifrkkggqAfvefdtveaArkakeylngvk 45 
                 lf+++   +++++ + k+g Af+ef++  +A  a++ lng  
  MMETSP0890-20130614|5094_1  89 LFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFS 130
                 6888888899*****************************965 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.9e-09   1.8e-05       2      59 ..      73     126 ..      72     132 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.9e-09
   PF14259.1   2 yvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkl 59 
                 +  +lp + +   l+ +f +y+  ++vr+++ k    +g Af+ef++  +A+ al+ l
  MMETSP0890-20130614|5094_1  73 FAQNLPDECNQNMLVILFQQYTGYKEVRMVPGK----KGIAFIEFADDVQASLALAGL 126
                 678*****************************8....9**************999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 565.70
//
Query:       MMETSP0890-20130614|5095_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-18   63.6   3.9    3.9e-12   45.4   0.2    3.5  4  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.012   13.7   0.2      0.018   13.1   0.1    1.2  1  PF11715.3  Nucleoporin Nup120/160
      0.078   12.4   0.0       0.11   12.0   0.0    1.1  1  PF08759.6  Domain of unknown function (DUF1792)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0049       2      28 ..      29      55 ..      28      55 .. 0.93
   2 ?   -1.1   0.0       0.4   1.8e+03      34      39 .]      58      63 ..      58      63 .. 0.88
   3 !   45.4   0.2   8.7e-16   3.9e-12       3      39 .]      69     105 ..      67     105 .. 0.95
   4 ?    0.4   0.0      0.13   5.9e+02       2      11 ..     110     119 ..     109     120 .] 0.83

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-06
                EEEEEEESSSSSEEEEEEESSSTEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllas 28
                ++++tl+gHt+ + c  fs dg+++++
  MMETSP0890-20130614|5095_1 29 NLLQTLEGHTDIILCYEFSKDGRRVVT 55
                5799*******************9997 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.4
                EEEEEE CS
  PF00400.27 34 tirlWd 39
                t ++Wd
  MMETSP0890-20130614|5095_1 58 TAKIWD 63
                78***9 PP

  == domain 3    score: 45.4 bits;  conditional E-value: 8.7e-16
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 ++ tlrgHt+ V++++fs  g+ll+++S D+t r+W+
  MMETSP0890-20130614|5095_1  69 LLLTLRGHTHDVRACDFSSGGTLLVTASNDRTARVWS 105
                 6789********************************7 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.13
                 EEEEEEESSS CS
  PF00400.27   2 eckatlrgHt 11 
                 +++ +l+gHt
  MMETSP0890-20130614|5095_1 110 TLLLVLEGHT 119
                 67899****8 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-06     0.018     222     254 ..      84     112 ..      72     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-06
   PF11715.3 222 dvsssevegqtfvftlsrDgkLRvWnletgqcl 254
                 d+s    +g t+++t s D++ RvW++e+g++l
  MMETSP0890-20130614|5095_1  84 DFS----SGGTLLVTASNDRTARVWSTENGTLL 112
                 444....499********************984 PP

>> PF08759.6  Domain of unknown function (DUF1792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.11     117     190 ..      13      89 ..       9      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
   PF08759.6 117 diliveGeksrsgvgndLfdnvksikril.cp..skdafskieeieeaikkvakdkliLlaLGptakvlaydLaklg 190
                 +i +  G+       n+L++ ++ +  i+ c   skd  + + ei+ +i +   d+l+L   G+t  v a d+++ g
  MMETSP0890-20130614|5095_1  13 KIFVARGRXILDTDTNNLLQTLEGHTDIIlCYefSKDGRRVVTEITAKIWDSMTDTLLLTLRGHTHDVRACDFSSGG 89 
                 5777788888889999***9999887765153559*********************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 463.81
//
Query:       MMETSP0890-20130614|5096_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-40  137.5   1.7    3.6e-40  137.2   1.2    1.1  1  PF01012.16 Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> PF01012.16  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   1.2   2.7e-44   3.6e-40      10     164 .]       5     160 ..       1     160 [. 0.94

  Alignments for each domain:
  == domain 1    score: 137.2 bits;  conditional E-value: 2.7e-44
                 CCEE-CHHHHHHHHHHHHHHHS.SSEEEEEE---GGGGHHHHHHHHH.----EEEEEE-GG..CS---CCCHHHHHHHHHHHH.-SEEEEESSTTTT-...-HHHHHHHHT--EEEEEEEEEE---EEEEEEE--TTSCEEEEESS..SEEEEE-TTSS-- CS
  PF01012.16  10 egklnpvdlealeaArrlaekl.ggevtalvvGpveeaaealrealaamGadevllledpa..lagydpeatakalaalikkekpdlvllgatstgkd...laprlAalLgtplitdvteleaeggkltvtRpieggnavvtvklpdrpavltvrpgafep 164
                 ++++np+++ a e+A rl+e++  +e++a+++Gp ++a+e+lr ala mGad+++++ ++    +++ p+atak+l+a+++ke p+lv+lg++s++ d   ++p+lA+lL++pl+t +++l++e+++++v R+++ g   v+++lp   av+t + +++ p
  MMETSP0890-20130614|5096_1   5 KMSMNPFCEIACEEAIRLKEAKiATEIVAVSIGP-KQAVETLRSALA-MGADRAIHIATDVrlDQEMQPLATAKLLKAVVEKEAPSLVILGKQSIDTDnatTGPMLAELLDWPLVTFASKLKIEANTAIVDRETDTGIDSVQISLP---AVITADLRLNTP 160
                 789*******************888*********.************.********97654114556*******************************************************************************...******999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 796.44
//
Query:       MMETSP0890-20130614|5103_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-39  134.5   0.0      6e-39  133.8   0.0    1.3  1  PF00732.14 GMC oxidoreductase
    1.6e-12   47.7   0.0    3.2e-12   46.7   0.0    1.5  1  PF05199.8  GMC oxidoreductase
    1.7e-08   33.6   1.0    3.7e-07   29.2   0.7    2.3  1  PF01266.19 FAD dependent oxidoreductase
      2e-07   30.1   0.0    0.00012   20.9   0.1    2.5  2  PF00890.19 FAD binding domain
    5.6e-07   29.3   0.9    1.8e-06   27.7   0.3    2.1  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    0.00094   18.2   0.3     0.0026   16.8   0.0    1.8  2  PF01946.12 Thi4 family
     0.0023   16.9   0.0     0.0093   14.9   0.0    1.8  2  PF01494.14 FAD binding domain
     0.0067   16.2   0.1       0.02   14.6   0.1    1.7  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.031   12.6   0.2       0.12   10.7   0.1    2.0  3  PF03486.9  HI0933-like protein
       0.17   10.6   0.1       0.47    9.1   0.1    1.7  2  PF01134.17 Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> PF00732.14  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   4.4e-42     6e-39       1     298 []     186     443 ..     186     443 .. 0.91

  Alignments for each domain:
  == domain 1    score: 133.8 bits;  conditional E-value: 4.4e-42
                 EEEEEE-------HHHHHHTTSTT--EEEE------TT--TTTBGGG-------TT---EE----TTT.S---EE---------TTT---------HHHHHHHHHT-------HHHHHHHHHHHEEE----GGG------EEE--------THHHHHHHHHHT----...--------..-----B----B-TT-BB--HHHHHTTTTTT-TTEEEE---------E------EE---EE------.-EE-EEEEEEEE-----SHHHHHHH-----HHHHTT-----SS---.--------EE CS
  PF00732.14   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrlimvlalalklidkklntayetepekaln.grrlilpaGktlGGgslvNwsayiRtpaadldeWeeefglegwstdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlp...vprdlngk..hqcGvcllgvtcrtgarqstarawLrpalerpnleiltgakaekiileegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlpgvGkNLqdHpv 298
                 vd++++g+G  g+v+A++L+  +  +vl+le g+  k       a+++ + +   +  ye++   a+n g+++il aG+tlGGgs++Nw++++Rtp ++ +eW  +   +  ++ ++++a++ +e             +rl+v+++ ++++ +n+all+++e+l l+    p+++++   + c  c +g   r  ++q +  ++L++al+  n  i  ++++  ii  ++ +++a+GV++ d  +       ++k +v++aG+l +P +L+rS++ ++++              +G NL++Hpv
  MMETSP0890-20130614|5103_1 186 VDFIIVGSGCGGAVTAYKLASAG-YTVLILEKGSAPK------YADFYGDEKTAFASMYERAGLVASNdGSIAIL-AGATLGGGSTINWGCSLRTPPNVQEEWGFDWCKP--GSSKLDKALDAIE-------------KRLSVNTSTIKHNVANAALLRGSEQLLLDvkpAPQNFKNAgtEACSLCAYG--DRFANKQAMPITYLQDALATGNCWIQPNTEVVSIIR-NPDSGKAQGVRCVDGLTL-----FSNKGIVLSAGSLHTPCILLRSAV-PNPN--------------IGYNLKLHPV 443
                 699****************9876.6899*****9755......56777777777888888877666651555555.****************************996555..799**********.............**************************99988999**99888899*******..**********************************77.99**********999888.....889*********************.9999..............********97 PP

>> PF05199.8  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.4e-15   3.2e-12       6     113 ..     546     652 .]     543     652 .] 0.88

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2.4e-15
   PF05199.8   6 svtlsssdpsgapsidvnylsdprDvaalvealkklrkileaaalskll......laeltpgpekeekdaaeasdealleavrraav.ttwHplGtcrMGkdekdgVVDsdlrvy 113
                 +v l+   ++++p   ++y+ ++ D +++ +al+++ ki+e+a ++k+         e++ g+  +++++a+  +e      +++a+  ++H++GtcrMG++++++VVD +++++
  MMETSP0890-20130614|5103_1 546 RVMLDP--KTSQP--MIKYTLNQIDSNRMKKALATAGKIWEKAGAQKIWtchianPIEWCRGQSIQTFENAVLARE----LTTNNATfFSAHQMGTCRMGTNPRTSVVDDRGQSW 652
                 555555..55566..789999999*******************8888889*************************9....666666669**********************9987 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.7   2.7e-10   3.7e-07       1     229 [.     187     453 ..     187     480 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.7e-10
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTS.......SCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHH............HHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTT.TEEEE-HHHHHHHSTTBTT...TT--E......EEETTEEEEEHHHHHHHHHHHHHHG-.-EEEESEEEEEEEEETTC..EE.EEEEES...EEEEEEEE----.THHHHHCCGTCCT.......TEEEEEEEEEEEE-T CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdias.......gaSgrngglihagllkerdprllrlalesldllrel............aaetgidvdfrrtgvldlasdeeeleelerlaerarangl.dvellsaeevrerepllsp...dlkgg......lfypddgqvdpaklvkalaraaeelG.veiiegtkVtglereggr..vsgvetedgs..iradkvvlAaGa.wsskllkllgldl.......pirpvrgqvlvtepl 229
                 d +i+G+G  G+ tAy La +g++V++lekg+ ++       + ++ ++   +agl++ +d +++ la ++l   +++            ++e g  +d+ + g+ +l    + +e+      + +++++ ++ ll+++e + +     p   ++k +      l  ++d  ++ +++   +++ a + G   i  +t+V+++ r+ +    +gv++ dg   +  + +vl+aG  +++ +l +  +         ++ pv +  + ++p+
  MMETSP0890-20130614|5103_1 187 DFIIVGSGCGGAVTAYKLASAGYTVLILEKGSAPKyadfygdEKTAFASMYERAGLVASNDGSIAILAGATLGGGSTInwgcslrtppnvQEEWG--FDWCKPGSSKLDKALDAIEKRLSVNTSTIKHNVaNAALLRGSEQLLLDVK--PapqNFKNAgteacsLCAYGDRFANKQAMPITYLQDALATGnCWIQPNTEVVSIIRNPDSgkAQGVRCVDGLtlFSNKGIVLSAGSlHTPCILLRSAVPNpnigynlKLHPVTACCALVPPT 453
                 789****************************9888899999977777777777777655666666666666666666433433333332144444..55556677777755555554433333333344434444443333333311..12223333333333488999999999999999999999999999**********9877666699*******544666999999996344444333333334555555666666666555555 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1     9e-08   0.00012       1      33 [.     187     219 ..     187     235 .. 0.93
   2 !    6.5   0.0     0.002       2.8     129     202 ..     351     417 ..     284     435 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 9e-08
                 SEEEE-------HHHHHHHCHTT-EEEE-SS-C CS
  PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeqe 33 
                 D +++GsG +G + A+++a ag +v+++ek+++
  MMETSP0890-20130614|5103_1 187 DFIIVGSGCGGAVTAYKLASAGYTVLILEKGSA 219
                 88****************************976 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.002
                 TT-......---HHHHHHHHHHHC-TTEEEE-SEEEEE--BG..--BB---EEEETTT-SEEEEEES.EEEE---- CS
  PF00890.19 129 adarretlvtghallarllesareagkvdfqerhradeLive..dgrvtGvvvenprsgrevrirakaavvlatgG 202
                 +d+     ++ +a+  + l+ a++ g++ +q++++++++i++  +g+++Gv +      +++ + +k ++vl +g 
  MMETSP0890-20130614|5103_1 351 GDR----FANKQAMPITYLQDALATGNCWIQPNTEVVSIIRNpdSGKAQGVRCV----DGLTLFSNK-GIVLSAGS 417
                 444....78899999999***********************63377*****999....555556677.88888886 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.3   1.3e-09   1.8e-06       1      30 [.     190     219 ..     190     220 .. 0.96
   2 ?   -2.4   0.0       3.4   4.6e+03      22      35 ..     534     547 ..     524     548 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.3e-09
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdr 30 
                 IvG+G++G+v+Ay La ag+ vl+lek++ 
  MMETSP0890-20130614|5103_1 190 IVGSGCGGAVTAYKLASAGYTVLILEKGSA 219
                 9**************************985 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.4
   PF13450.1  22 vlvlekrdrlGGra 35 
                   +l++ +++GGr+
  MMETSP0890-20130614|5103_1 534 FIILQRDSGIGGRV 547
                 568999999***85 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       4.8   6.6e+03      69      88 ..      32      51 ..      31      54 .. 0.86
   2 !   16.8   0.0   1.9e-06    0.0026      16      50 ..     184     218 ..     174     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 4.8
                ETTTHHHHHH-----EE-SS CS
  PF01946.12 69 rkeakelLdelgiryedegd 88
                ++eak+l++e +i+ ++++d
  MMETSP0890-20130614|5103_1 32 QEEAKLLIKEEDIPTNESDD 51
                689999*******9999987 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.9e-06
                 TEEEEEEE-------HHHHHHHTSTS-EEEEESSS CS
  PF01946.12  16 aesDvvivGaGssGltaayylakkdlkvailerkl 50 
                  ++D +ivG+G  G ++ay la ++  v+ile+  
  MMETSP0890-20130614|5103_1 184 QDVDFIIVGSGCGGAVTAYKLASAGYTVLILEKGS 218
                 56899***************************965 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.8e-06    0.0093       2      35 ..     186     219 ..     185     224 .. 0.90
   2 ?   -1.0   0.0      0.47   6.5e+02     101     146 ..     349     394 ..     308     402 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.8e-06
                 ECEEE--------HHHHHHHHH.HHEEEEESSSC CS
  PF01494.14   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekhst 35 
                 +d +IVG+G  G+++a  L++aG  v+++ek s 
  MMETSP0890-20130614|5103_1 186 VDFIIVGSGCGGAVTAYKLASAGYTVLILEKGSA 219
                 7889**************************9776 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.47
                 GTT-CCE--ECCCCCCHHHHHHC--.EEESS-CECCSCCCHHHHHHC CS
  PF01494.14 101 spervtvypqteleriLvehaeerg.lqvrfktevlsleqdeegvta 146
                  + +  +  q +   +L ++  ++g + ++ +tev+s+ ++ ++ +a
  MMETSP0890-20130614|5103_1 349 AYGDRFANKQAMPITYLQDA-LATGnCWIQPNTEVVSIIRNPDSGKA 394
                 55555556677778888888.55666**********99998887666 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.4e-05      0.02       1      32 [.     187     218 ..     187     247 .. 0.87
   2 ?   -3.0   0.0       3.7   5.1e+03      61      88 ..     356     390 ..     323     421 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-05
                 SEEEE----HHHHHHHHHHHTTSEEEEECSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeg 32 
                 d +i+G+G +G  +a +la +g+ v+++ek  
  MMETSP0890-20130614|5103_1 187 DFIIVGSGCGGAVTAYKLASAGYTVLILEKGS 218
                 679************************97644 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.7
                 H.......HHHHHHHHCTCEEEHCHEEEEEETTTT CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9  61 l.......kvvdelekagieilleknvvkidsgsk 88 
                 +       +++d l +++  i+ +++vv+i++ + 
  MMETSP0890-20130614|5103_1 356 NkqampitYLQDALATGNCWIQPNTEVVSIIRNPD 390
                 04444555556666667777777777777744433 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.7e-05      0.12       2      34 ..     187     219 ..     186     222 .. 0.93
   2 ?   -2.2   0.0      0.69   9.5e+02     112     168 ..     362     421 ..     354     423 .. 0.74
   3 ?   -3.8   0.0       2.1   2.9e+03     104     137 ..     550     583 ..     544     592 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.7e-05
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakk 34 
                 d i++G G  G  +A ++a++g  Vl+l+k+++
  MMETSP0890-20130614|5103_1 187 DFIIVGSGCGGAVTAYKLASAGYTVLILEKGSA 219
                 789***************************975 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.69
   PF03486.9 112 vdallkelkeagvkirletevksvekeed..gafrvkt.kseeeleadklvlAtGGkSiP 168
                 ++ l+ +l   ++ i+ +tev s+ ++ d  +a  v++ ++ + ++ + +vl+ G++  P
  MMETSP0890-20130614|5103_1 362 ITYLQDALATGNCWIQPNTEVVSIIRNPDsgKAQGVRCvDGLTLFSNKGIVLSAGSLHTP 421
                 46799999999999*********9876551145567776677777888899998887666 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2.1
   PF03486.9 104 vsdkakdivdallkelkeagvkirletevksvek 137
                 + ++++++++  l++++++++k  l t+ k +ek
  MMETSP0890-20130614|5103_1 550 DPKTSQPMIKYTLNQIDSNRMKKALATAGKIWEK 583
                 4455555555555555555555555555444444 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00034      0.47       1      28 [.     187     214 ..     187     236 .. 0.86
   2 ?   -2.4   0.0       1.1   1.4e+03     117     154 ..     381     421 ..     378     430 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00034
                 SEEEE-------HHHHHHHH----EEEE CS
  PF01134.17   1 dviViGgGhAGceAAlaaarlGakvlLi 28 
                 d i++G G  G   A+++a +G+ vl++
  MMETSP0890-20130614|5103_1 187 DFIIVGSGCGGAVTAYKLASAGYTVLIL 214
                 579********************99988 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.1
                 -EEE--BSS..SBB---EE----B-.EESEEEE-----B-- CS
  PF01134.17 117 eveelivee..kkvkgvvtedgeti.kakavviatGtflkg 154
                 ev ++i +   +k +gv+  dg t+ ++k +v+++G+  + 
  MMETSP0890-20130614|5103_1 381 EVVSIIRNPdsGKAQGVRCVDGLTLfSNKGIVLSAGSLHTP 421
                 55556443355999****999987615569999***95544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.08u 0.38s 00:00:01.46 Elapsed: 00:00:00.88
# Mc/sec: 1775.48
//
Query:       MMETSP0890-20130614|5111_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-18   64.8   0.1    1.6e-17   64.0   0.0    1.4  1  PF00828.14 Ribosomal protein L18e/L15
  ------ inclusion threshold ------
      0.093   10.2   0.0       0.12    9.8   0.0    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF00828.14  Ribosomal protein L18e/L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   2.3e-21   1.6e-17       3     128 ..      96     224 ..      95     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 2.3e-21
                 CCSHHHHHHH---S-----STT-T......STSSSCHHH-----GG.HSGGGGCEEEEHHHHHHCTTTCTTSB---TTTCEEEHHHT....SSEEEEE---..--.-S-..-EEEESEE-HHHHHHHCC----EEE CS
  PF00828.14   3 dgktrgrgnkggrgraGvhkhkriflgklvklyrrlgkrgfnrpkl.rksrrnvapvnlgkLdelikklksgkleeegktvvvlgev....tgyvKvlGsG..kl.tkp..ltVkalkfSkkArekIeaaGGevvl 128
                 +g ++g g++g+++r+G+   +++f+g+++ lyrrl+k    rp      ++ +  + l++L      ++s+   ++ +t++  g+v    +  +Kv+Gs   +l + p  ltVka++f+++Are+Iea GG++v+
  MMETSP0890-20130614|5111_1  96 KGASCGFGMRGQKSRSGR-PARPGFEGGQTALYRRLPKL-VGRPTGpGHTKEIYSLIKLDDLTA--CTENSQ---VNFETLLTQGTVtkakHSIFKVVGSKneELdSLPkgLTVKAHAFTRTAREAIEANGGKCVT 224
                 67899************8.999****************8.333333344568899999999975..433333...7999999999999999999*****852245533345***********************98 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   1.8e-05      0.12      40      71 ..     140     171 ..     133     192 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.8e-05
   PF12722.2  40 pestedvfsLispaelrkirdenpeNletLir 71 
                 p  t++++sLi  ++l    +++++N+etL+ 
  MMETSP0890-20130614|5111_1 140 PGHTKEIYSLIKLDDLTACTENSQVNFETLLT 171
                 66899*************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.65
# Mc/sec: 870.06
//
Query:       MMETSP0890-20130614|5110_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-14   52.2   0.0      1e-13   51.6   0.0    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
  ------ inclusion threshold ------
      0.062   11.5   0.0      0.074   11.2   0.0    1.1  1  PF02705.11 K+ potassium transporter


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.5e-17     1e-13       4     126 ..     105     225 ..     102     245 .. 0.77

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 1.5e-17
  PF00160.16   4 ietsskGrivieLfedkaPktvenFlklakegfYd.gtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh......krGalamartgpepnsngsqFfItlgdaphlDgky.tvFGkVv 126
                  +t ++G+++ie+++d aP  +e+Fl+++ +gf+d  +  +r +++f++q+G   +    g+ k +++ e i+d+++            krG+l++a +g  +ns++++Ff+ ++d +  +    + F +++
  MMETSP0890-20130614|5110_1 105 CQT-TAGPLEIEVHKDWAPLGAERFLTMVVSGFFDtRVALFRAVENFICQTGI--S----GDPKvHRKYEAIADDVQWL--DLtkpqpmKRGYLSFAGSG--QNSRTTEFFFAFRDLQLGNAPWeVPFAQII 225
                 566.48*****************************66889*************..2....2223355666688888533..2223556799******776..6***********997766653346666666 PP

>> PF02705.11  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.1e-05     0.074     396     454 ..      25      83 ..      20     134 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
  PF02705.11 396 idvlflsanlkKvpeGgwlplllaavlllimltWkygrkkkvekekeeevsleellell 454
                  + +   a+ +K +eG+w+p++l++++++++++    +    ++++++ +sl++ +++ 
  MMETSP0890-20130614|5110_1  25 AESVWEYAEKEKEAEGAWFPIMLGVFVIAMVILGLLVSTSSPQSRQHKWLSLNDDNKKE 83 
                 5666778899999***********99988877655555555544444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:01.07
# Mc/sec: 656.20
//
Query:       MMETSP0890-20130614|5116_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-22   80.9   0.0    1.4e-22   80.5   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0     1e-26   1.4e-22      12     155 ..      49     213 ..      35     214 .. 0.73

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 1e-26
                 XXX.XXXXXX.---........-TTTTT--------TTT------------------S--TT--..STT--.---......--S-TT.THHHH---HHHHHHHHTT---------------.............--------------------STTT----TTTTT------- CS
  PF00504.16  12 dlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.waeag.gls......lptllalqillligflelareqelkapesegsekraypGg.............lgfdplglakdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  +g +Dpl+  + +        t+ +lr++E++HGRvAM+a+lG++v+      s    +++lp   +e g + +      +p ++ lqi++lig+le +   e+ +     + + ++pG               + dp+++ +++++k + ++ Ei+nGRlAM+++l+++ +a
  MMETSP0890-20130614|5116_1  49 SIGlWDPLNALNLKfwtlsneaTIGYLRHSEIKHGRVAMAAFLGYCVQSTPLV-S--GPHLKLPYkGYEPGlT-PpeqwdaIPLAGKLQIFTLIGMLESY--GEILDV---HYCNGGQPGYyppikgnrpelifDLYDPFKWFDESKDKVFGRQCEINNGRLAMLGILSILSEA 213
                 4568999998855577788889***************************3322.2..2233444221111221.11233359999**************7..555443...3444666776777788899977745899999999999999*****************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:01.14
# Mc/sec: 508.44
//
Query:       MMETSP0890-20130614|5113_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   89.8   0.0    1.5e-25   89.4   0.0    1.1  1  PF13380.1  CoA binding domain
     0.0033   17.7   0.0     0.0045   17.3   0.0    1.2  1  PF02629.14 CoA binding domain


Domain annotation for each model (and alignments):
>> PF13380.1  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   2.2e-29   1.5e-25       2     102 ..      24     126 ..      23     134 .. 0.95

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 2.2e-29
   PF13380.1   2 tiaVvGasdkpekysnkvlrylqekgypvipVnpkeeeilgvkvyaslaedl..pvdlvsvftppervpavveealalgakavwfqpgseneeaaeaaeeagi 102
                 t+a+vG sdk ++ snk+ +yl ++g++v+pVnp   +i+g  +yasl+e++  ++d+v+vf+++e + ++ ++a+ lga+a+w q+g+ +++a ++a++++ 
  MMETSP0890-20130614|5113_1  24 TVALVGFSDKANRESNKIGHYLINQGFHVYPVNPAVASIDGMSSYASLKEVPvdHIDIVNVFRRSEFLYDITQQAIHLGAGAIWAQLGVMDDKAEALAQQNDT 126
                 89***********************************************944579*******************************************99765 PP

>> PF02629.14  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.6e-07    0.0045       2      91 ..      21     107 ..      20     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.6e-07
                 TTEEEEEE-----..TTT.HHHHHHHHEEEEEEEES-TTT---B----BEESSHHHHHHHCT-SEEEE-S-HHHHHHHHHHHHH----EEE CS
  PF02629.14   2 ketkviviGasglgiqll.yhfkellkygikkvfgvnprkvgtevggipvyksvdeleekvdvdvavitvPaeeaqeaidelveagikgiv 91 
                 ++t v+++G+s ++  +    ++ l++    +v++vnp      ++g++ y s++e++ +  +d+  ++  +e+  + ++++++ g   i+
  MMETSP0890-20130614|5113_1  21 NQTTVALVGFSDKANRESnKIGHYLINQ-GFHVYPVNPA--VASIDGMSSYASLKEVPVD-HIDIVNVFRRSEFLYDITQQAIHLGAGAIW 107
                 6899**************6666767665.579*******..899**************99.566666677999999999999988888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 531.50
//
Query:       MMETSP0890-20130614|5128_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-13   47.5   0.0    1.3e-12   46.8   0.0    1.4  1  PF13475.1 Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   9.7e-17   1.3e-12       1      38 [.      16      53 ..      13      54 .] 0.98

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 9.7e-17
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqng 38
                D+E++l av +ng al+y++ eLk+Dke+vlkAv qng
  MMETSP0890-20130614|5128_1 16 DKEVALIAVAQNGHALEYADAELKKDKEVVLKAVAQNG 53
                9************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 235.28
//
Query:       MMETSP0890-20130614|5125_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-58  195.7   0.6      4e-58  194.8   0.4    1.5  1  PF01798.13 Putative snoRNA binding domain
    2.9e-26   90.9   0.0    5.2e-26   90.1   0.0    1.4  1  PF08060.8  NOSIC (NUC001) domain
  ------ inclusion threshold ------
      0.049   13.6   0.6      0.049   13.6   0.5    2.0  2  PF08156.8  NOP5NT (NUC127) domain


Domain annotation for each model (and alignments):
>> PF01798.13  Putative snoRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8   0.4   8.7e-62     4e-58       1     149 [.     250     403 ..     250     404 .. 0.95

  Alignments for each domain:
  == domain 1    score: 194.8 bits;  conditional E-value: 8.7e-62
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---HHHHHHHHH---HHHHHT--HHHHTT----------------------GGGSHHHHTS-SS----HHHHHHHHHHHHHHHHHH-----TH..........HHHHHHHHHHH--- CS
  PF01798.13   1 nikelaerveeLaelrkqleeyieskmekiAPnltalvGekvgArLishaGsleeLaklpastiqvlGaekalfralktkaktpkyGliyqseliqkapkkvkgkiaRllaaKlalAarvDalseesdes.....vlgkelreelekrleklee 149
                 ++++lae+v eL+++r++l +y++ +m+++APnlt+lvG  vgArL++haGs+ +Lak+pastiq+lGaekalfralktk++tpkyGliy+++l+++a++k+kgki+R+laaK+alA+r+Dal e+ d++      lg elr+++e rl++le+
  MMETSP0890-20130614|5125_1 250 HVRSLAEQVVELSKYRARLAQYLSARMQAVAPNLTVLVGDLVGARLVQHAGSILNLAKHPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQAAPKNKGKISRVLAAKCALAVRLDALGEDDDTNggvnnDLGLELRAKVEMRLRQLES 403
                 58899***********************************************************************************************************************998864333337999***********9985 PP

>> PF08060.8  NOSIC (NUC001) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   1.1e-29   5.2e-26       1      52 [.     149     200 ..     149     201 .. 0.97

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 1.1e-29
   PF08060.8   1 mIiqaiellddiDkeinlfhmrlrewYswhFPELekivkdnidYakvVklig 52 
                 m++qai lldd+Dkein+++mr+rewY+whFPEL+ + +dn++Yak+V+ +g
  MMETSP0890-20130614|5125_1 149 MVVQAIGLLDDLDKEINTYAMRVREWYGWHFPELAALLNDNLKYAKIVLTVG 200
                 9***********************************************9887 PP

>> PF08156.8  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5   1.1e-05     0.049      28      66 ..       5      43 ..       1      44 [. 0.89
   2 ?   -5.0   0.9         3   1.4e+04      20      32 ..     456     468 ..     454     473 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.1e-05
   PF08156.8 28 evqksfkdvekfsksvkLksFqkFesaaeALeeaaalse 66
                ++ + f+d e+  k +kLk+F  +++++eA+++a++ +e
  MMETSP0890-20130614|5125_1  5 ALSSLFSDRESTAKKLKLKAFGAYKDTTEAVAAATEFVE 43
                56778999**************************99887 PP

  == domain 2    score: -5.0 bits;  conditional E-value: 3
   PF08156.8  20 kllikdekevqks 32 
                 k+ +k++++v++s
  MMETSP0890-20130614|5125_1 456 KKNKKSKDDVDSS 468
                 4444444466555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1046  (0.0765067); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.92
# Mc/sec: 1307.58
//
Query:       MMETSP0890-20130614|5135_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-06   25.3   8.0    6.2e-06   25.3   5.6    2.2  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   5.1    0.0029        39      11      23 ..     122     134 ..     121     136 .. 0.57
   2 !   25.3   5.6   4.5e-10   6.2e-06       1      30 [.     135     164 ..     135     165 .] 0.91

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0029
   PF04886.7  11 TvqPTgqPtaqPT 23 
                 T+ PT +Pt++PT
  MMETSP0890-20130614|5135_1 122 TGTPTFEPTPGPT 134
                 5556666666665 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 4.5e-10
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqP 30 
                 +pT  Pt +PT  PT  Pt  PT++Pta P
  MMETSP0890-20130614|5135_1 135 PPTYKPTYHPTPRPTMRPTMRPTSKPTAKP 164
                 799999999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.86
# Mc/sec: 459.77
//
Query:       MMETSP0890-20130614|5141_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.4    6.9   8.1        2.7    8.1   0.8    2.2  2  PF10247.4 Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.9    0.0064        88      12      29 ..       4      17 ..       1      25 [. 0.43
   2 ?    8.1   0.8    0.0002       2.7       8      23 ..      20      35 ..      17      46 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0064
   PF10247.4 12 imGaaVGgafGllfGgya 29
                 +Ga VG+++G    +  
  MMETSP0890-20130614|5141_1  4 SVGADVGLGVG----LGV 17
                34444444444....333 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0002
   PF10247.4  8 kmGfimGaaVGgafGl 23
                ++G+ +G+ VG+++G 
  MMETSP0890-20130614|5141_1 20 TVGVNVGSRVGLCVGP 35
                6788888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.30s 00:00:00.57 Elapsed: 00:00:00.83
# Mc/sec: 132.81
//
Query:       MMETSP0890-20130614|5142_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.73
# Mc/sec: 183.83
//
Query:       MMETSP0890-20130614|5144_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.4   0.2      0.033   13.9   0.1    1.3  1  PF04152.9 Mre11 DNA-binding presumed domain


Domain annotation for each model (and alignments):
>> PF04152.9  Mre11 DNA-binding presumed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.4e-06     0.033      96     150 ..      92     145 ..      71     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.4e-06
   PF04152.9  96 gqrFvgkVANpndvllfykkkkkkekkkkkekeekeeeeeeleeeeldelkvedl 150
                  ++F ++V N+ndv+  + k++ +++  +k+k+++  e++ +e+ +ld  + +  
  MMETSP0890-20130614|5144_1  92 ANEFDDEVLNINDVISSSTKRTASNR-GRKRKRDAITESDLEEMRNLDMESRKAK 145
                 689**************999998885.4555555555555555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.79
# Mc/sec: 536.91
//
Query:       MMETSP0890-20130614|5147_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.087   12.3   0.0       0.11   12.0   0.0    1.1  1  PF03775.11 Septum formation inhibitor MinC, C-terminal domain


Domain annotation for each model (and alignments):
>> PF03775.11  Septum formation inhibitor MinC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.9e-06      0.11      17      50 ..      31      64 ..      27      65 .] 0.94

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.9e-06
  PF03775.11 17 kgdlivlgdVnpGaeiiAdGnihvyGklrGralA 50
                 ++li+++d ++ a+i+ + + ++y +l G ++A
  MMETSP0890-20130614|5147_1 31 CNHLIIVSDGSECANIAGAASTIIYDPLNGSIHA 64
                489******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 202.29
//
Query:       MMETSP0890-20130614|5140_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-07   28.2   0.0    1.9e-06   27.2   0.0    1.5  1  PF00534.15 Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.074   13.0   0.0        1.5    8.8   0.0    2.6  2  PF13938.1  Domain of unknown function (DUF4213)


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.8e-10   1.9e-06      19     126 ..     154     258 ..     140     302 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 2.8e-10
                 EE---BSTTT-HHHHHHHHHCSTT..GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTB CS
  PF00534.15  19 lsvgrlekeKgvdllikafallkeqenpnlklvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvgg 126
                  ++g     Kg+d+l+ ++++  + +   l+l  +Gdg+ ++  +  a+ l+      f g+ ++ d  +++ n difv ps+sE ++ +  EA+a+g+++++  ++ 
  MMETSP0890-20130614|5140_1 154 YFLGKALWAKGYDQLLLLLSINSN-LCTSLQLDCYGDGPDLEAISTKAKVLGA-SGLAFKGRADHGDA-KVFGNYDIFVNPSISEVLCTATAEALAMGKVIVIARHPS 258
                 588999999***********8765.7**************9999999999998.67899999997775.678888************************999887665 PP

>> PF13938.1  Domain of unknown function (DUF4213)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00022       1.5      13      65 ..      31      79 ..      21      90 .. 0.71
   2 ?    1.0   0.0     0.063   4.3e+02      31      80 ..     204     254 ..     200     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
                EEEEEE----EEEEE----B---EE--GGG-.....S-S----SS--HHHHHH CS
   PF13938.1 13 rvedvviGlswtlVklsnGslGvAytpreeessarrlpeageligksaeelae 65
                 +  ++ G+ wt V +    +G+A+t  e    +++l e +e +  s ++lae
  MMETSP0890-20130614|5140_1 31 HINWYRNGPRWTSVFTH--VVGIAHTNYEAY--TTTLTENREGRSLSFDALAE 79
                5666888**********..9*********99..44444444444444455555 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.063
                 -B---EE--GGG-.....S-S----SS--HHHHHHTTT-SS.HHHHH---H CS
   PF13938.1  31 GslGvAytpreeessarrlpeageligksaeelaelllsen.plerslglA 80 
                 G+ G+A+  r ++ +a++ +++  ++++s++e++  + +e  ++ + + +A
  MMETSP0890-20130614|5140_1 204 GASGLAFKGRADHGDAKVFGNYDIFVNPSISEVLCTATAEAlAMGKVIVIA 254
                 567999999999999999**************9988887776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.84
# Mc/sec: 1603.28
//
Query:       MMETSP0890-20130614|5151_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-19   68.5   0.0    4.4e-19   67.9   0.0    1.3  1  PF08373.5 RAP domain
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.25   10.8   0.0    1.6  2  PF10881.3 Protein of unknown function (DUF2726)


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   6.4e-23   4.4e-19       1      57 [.     115     174 ..     115     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 6.4e-23
   PF08373.5   1 ieidGpthF..yrns.gvllgktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57 
                 ie+dGpth+  +++  +v +g tk+K r+L++lGw vi++pyfeW  l +   + +Yl++
  MMETSP0890-20130614|5151_1 115 IEVDGPTHYlkCKEKqRVTNGRTKFKSRLLHQLGWSVIHVPYFEWDALTDAATQDAYLQS 174
                 9********88777745555****************************99999999**87 PP

>> PF10881.3  Protein of unknown function (DUF2726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.5   3.4e+03      83     107 ..      64      88 ..      58      97 .. 0.69
   2 ?   10.8   0.0   3.6e-05      0.25      68     107 ..     109     154 ..     102     168 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.5
   PF10881.3  83 qgkaekrDalkeealekAgipllrv 107
                 ++  + +D   +++ +++g+ l r+
  MMETSP0890-20130614|5151_1  64 RKAFKCQDSKPSQLQREVGLALTRI 88 
                 5555667777777788888888887 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.6e-05
   PF10881.3  68 lkpvavIeldgashk......qgkaekrDalkeealekAgipllrv 107
                  + + +Ie+dg++h+      q+  + r ++k+++l++ g  +++v
  MMETSP0890-20130614|5151_1 109 PETMTAIEVDGPTHYlkckekQRVTNGRTKFKSRLLHQLGWSVIHV 154
                 56788**********99999999999************99888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.63
# Mc/sec: 711.30
//
Query:       MMETSP0890-20130614|5146_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.3   0.0       0.23   10.4   0.0    1.5  1  PF00360.15 Phytochrome region


Domain annotation for each model (and alignments):
>> PF00360.15  Phytochrome region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.7e-05      0.23      19      58 ..      51      90 ..      39     134 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.7e-05
                T---TT-HHHH---------EEE----EEE------HHHH CS
  PF00360.15 19 peglvtqspnlldlvkadGaalllegkvttlGetPseeqi 58
                 +g+++++++ ldl++a+  a+    ++++ G+tP+e + 
  MMETSP0890-20130614|5146_1 51 SNGFTESQSKTLDLFDATSSAVAALVRWSCCGSTPPELAQ 90
                578999999***************************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       664  (0.0485664); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 1091.67
//
Query:       MMETSP0890-20130614|5157_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.9   1.3        1.7    8.9   0.1    2.6  2  PF03373.9 Octapeptide repeat


Domain annotation for each model (and alignments):
>> PF03373.9  Octapeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00012       1.7       1       6 [.      38      43 ..      38      44 .. 0.96
   2 ?    3.5   0.0    0.0084   1.1e+02       1       7 [.      51      57 ..      51      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00012
   PF03373.9  1 PgkEDn 6 
                PgkEDn
  MMETSP0890-20130614|5157_1 38 PGKEDN 43
                9****9 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0084
   PF03373.9  1 PgkEDnn 7 
                P  EDn 
  MMETSP0890-20130614|5157_1 51 PEREDNR 57
                889***5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       118  (0.00863078); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 349.30
//
Query:       MMETSP0890-20130614|5158_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 215.32
//
Query:       MMETSP0890-20130614|5159_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-38  130.3   0.6    6.5e-38  128.8   0.0    2.1  3  PF03462.13 PCRF domain
    3.9e-36  123.2   0.3    3.9e-36  123.2   0.2    1.9  2  PF00472.15 RF-1 domain
  ------ inclusion threshold ------
      0.048   13.8   8.5      0.037   14.2   4.0    1.9  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF03462.13  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1     5e+03      16      34 ..      22      40 ..      16      55 .. 0.65
   2 ?   -3.3   0.0       1.4   6.3e+03      23      26 ..      65      68 ..      34      81 .. 0.56
   3 !  128.8   0.0   1.4e-41   6.5e-38       4     116 .]      87     199 ..      84     199 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.1
                CCCCCCCCCCHHHCCCHHH CS
  PF03462.13 16 aeeelkeleeeleelekel 34
                +e +l+e+ +++eel+ +l
  MMETSP0890-20130614|5159_1 22 METQLNEMVKSFEELTARL 40
                5556666666666665553 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.4
                CCCH CS
  PF03462.13 23 leee 26
                + e+
  MMETSP0890-20130614|5159_1 65 TVEK 68
                2222 PP

  == domain 3    score: 128.8 bits;  conditional E-value: 1.4e-41
                 HSSTTTCCHHCCCCCCCCCCCCHHHCCCHHHHHHH-CTSTCGCS-EEEEEE------HHHHHHHHHHHHHHHHHHH---BEEEEEEE--------EEEEEEB-------GCCC CS
  PF03462.13   4 eeeeddeelrelaeeelkeleeeleelekelkelllpkdeadkknaileiraGaGGteaalfaedLlrMYqryaerkgwkvevldlseseeggikeatleiegegaygkLkyE 116
                 ee++d++elrela++e++ele++++ele+el+ lllp+d++d++n++leiraG+GG+ea+++a +Ll+ Y++y++++gw+++++d+s+++ gg++++t+ei g+++y+kLk+E
  MMETSP0890-20130614|5159_1  87 EESSDEPELRELARSEVRELESKIKELENELQLLLLPSDPNDERNVMLEIRAGTGGSEASIWAGNLLKAYTAYSQSQGWSTKIVDTSPADDGGYRSVTVEIAGDSVYSKLKFE 199
                 688999**********************************************************************************************************9 PP

>> PF00472.15  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.61   2.8e+03      66     103 ..      35      72 ..      24      84 .. 0.49
   2 !  123.2   0.2   8.5e-40   3.9e-36       4     114 .]     231     341 ..     228     341 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.61
  PF00472.15  66 rLkallaeaelkkkrektketrkskkrrlerkskiRtY 103
                  L+a+la+    +  e+  ++ +++++  e  +k   Y
  MMETSP0890-20130614|5159_1  35 ELTARLADPDVVSDVEALTRISRQRAKAAETVEKYEEY 72 
                 55555555554444444444444444434433332233 PP

  == domain 2    score: 123.2 bits;  conditional E-value: 8.5e-40
  PF00472.15   4 ekkeieikekdleietirssGpGGQnVNkvesaVrlthkptgivvkaqeeRsqeqNrekAlerLkallaeaelkkkrektketrkskkrrlerkskiRtYnlprsrvkdhr 114
                 ++ +i+i++kd++++t rs+G+GGQnVNkve+a  l hkptgi + +++eRsq +N+e A+++L+++l+e+++++++++ ++tr  +++++ r++kiRtYn ++sr +dhr
  MMETSP0890-20130614|5159_1 231 DEVTIQIDPKDIDMSTARSGGAGGQNVNKVETACDLLHKPTGIRIFCTQERSQLKNKELAMQLLRTKLYEIAQQERNAEIRNTRLMQVGTGGRSEKIRTYNWKDSRCTDHR 341
                 6789**********************************************************************************************************9 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   4.0   8.2e-06     0.037     143     202 .]      46     118 ..       9     118 .. 0.66
   2 ?   -0.2   0.0       0.2   9.2e+02     116     145 ..     279     307 ..     231     351 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.2e-06
   PF13476.1 143 r.........ekekfklkekkkrleelekeleeledekellekllqeeekek....eleeleeeleelleele 202
                           + ++ k +e+ +++ee++k+ +el d ++l+e+  +e e+++    e  ele++++el++el+
  MMETSP0890-20130614|5159_1  46 VsdvealtriSRQRAKAAETVEKYEEYKKSNNELIDAQNLFEESSDEPELRElarsEVRELESKIKELENELQ 118
                 0333333333345667789999*********************8666666666666**************996 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.2
   PF13476.1 116 deleqfleellksdkeilpliaylgqerek 145
                 +e  q  +++l  +  + +l+ + +qer +
  MMETSP0890-20130614|5159_1 279 QERSQLKNKELAMQLLRTKLYEIAQQER-N 307
                 2222222333333333333333333333.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       987  (0.0721913); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:01.04
# Mc/sec: 880.20
//
Query:       MMETSP0890-20130614|5160_1  [L=910]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.6e-144  479.8   0.0   4.3e-143  477.3   0.0    1.9  1  PF00133.17 tRNA synthetases class I (I, L, M and V)
    4.4e-43  146.5   0.7    2.8e-42  143.9   0.0    2.4  2  PF08264.8  Anticodon-binding domain of tRNA
    3.2e-06   25.9   0.0      0.015   13.8   0.0    2.6  3  PF09334.6  tRNA synthetases class I (M)
    3.6e-06   26.8   0.9    9.6e-06   25.4   0.6    1.7  1  PF10458.4  Valyl tRNA synthetase tRNA binding arm
    1.6e-05   24.1   0.0    0.00024   20.3   0.0    2.3  2  PF13603.1  Leucyl-tRNA synthetase, Domain 2
    0.00012   21.7   0.3    0.00028   20.4   0.1    1.5  1  PF12761.2  Actin cytoskeleton-regulatory complex protein END3
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.062   12.3   0.0    1.6  1  PF01406.14 tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.3   0.0  2.2e-146  4.3e-143      94     601 .]       2     570 ..       1     570 [. 0.95

  Alignments for each domain:
  == domain 1    score: 477.3 bits;  conditional E-value: 2.2e-146
                 TS-CHHHHHHHCHHHHHHHHHHHHHHHC------TTS---TTSHHHHHHHHHH---TTT---EE---EEEEEETTTTCE--GGGEEEEEEE..................EEEEE--BEE-S---.....--B--EES-CCCCCG-BEEE--TTS---------B--TTTCHHHHCCTT---S-------TT--EE-GC.C--SEEEEE--.-S----------B------HHHH----SS-----------------......................---.----SSHHHHCCHHHCTT------BEEEEEEEEEETTT--B-EEEEE---EE-HHHHCCHHHHHHH..TSEESS----HHHHHHHCC---EE-EES-----B---EE-----EE-SCC.HHH.HHHHHHCC---HHHHHS-CHHHS...-------EE---EE-CCCC---TT---TT....TSTTS-..SSECEEEE--CCG---HHHHHHHHHCC----SECEEEE---EE--------TT------CHHHHH.....................................H---HHHHHHHC.TS-TTS-EE-- CS
  PF00133.17  94 klgrekfrekvrewkaeyaeeirkqvkrLGvsvdwdreylTldeeleeavievfvelakkGliyrgkklvnwstklktalselEveykdvk..................dalihvafpladkke.....aklviwTTtPwTllgntavavnpeleyvvedellilaeallesllkkkkeeledergkeLegkkvelpl.ldreipiiade.yvdkeaGtGiVkiaPahgedDyevgkkhnlevinvldedGtlneea......................eef.eglkrfkarkkiveeLkekglllkkekiehsypfcwrsktpiiyrateqWfvkvkelaeaalkave..kvkfvpkskekrykswleniqdWcisRqrwWGtripvwvsketeevvvreelke.lvakrleeeaeekalekeakdkl...kkekgklekdedvlDvWFdSgstpfsvlgypeentkefkkffpadllleGlDqirgWvarlillslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvik.....................................kygadalRltliassdvgrdinls 601
                 +lgre+f+++v++wk++y ++i +q++rL  svdw+re++T+d+   +av+e+fv+l++ Gl+yr ++l+nws +lk+a+s+lEv+y + +                  ++++++a+++ d k+      +++++TT+ +T+lg++avav+p+                             d r+k+L+g+++ +p+  +r++ ii d+  vd++ GtG+Vki+Pah+++Dye gk+h l++i++  +dGt+ ++a                      +++ +g+ r +ar  + ++Lk+++l+  k +  + + +c+rs+++i++ +++qWfv  +++a++a +av+  + ++ pk +ek+ ++wlen++ Wc+sRq+wWG+++p+w++ +++e +++ ++++   ++r   +++e++++ +a++ l    k+ g l++dedvlD+WF+Sg+ pfsv g+pe+ t++f+ f+p+ ll++GlD++++Wvar+++l+l+lt++ p+++v++h++v+d+eGrKMSKslgNvidpl+vi+                                     k+g+dalR  l+a++ +grdinl+
  MMETSP0890-20130614|5160_1   2 DLGREQFINQVWKWKEQYGSRICQQLRRLASSVDWNRERFTMDPVCAHAVTEAFVQLHDAGLMYRDSRLINWSCSLKSAISDLEVDYIELEgadkrtvpghpkdkqyefGMFTEFAYKVIDPKTrkptgDEVIVATTRLETMLGDVAVAVHPN-----------------------------DPRYKKLHGMQLLHPFfPHRQMDIILDDiLVDMNLGTGCVKITPAHDPNDYECGKRHSLPFITIFSRDGTVVQNAtpfivggkgdeassrfaqiqhfPDWiAGQPRYEARIIVENRLKQADLFRDKYPKPMRLALCSRSGDIIEPLVQPQWFVDCNDMARRACDAVRsgELSILPKIHEKTWFHWLENVRPWCVSRQLWWGHQVPAWFAYAKDEDMTKIDKDSpAFKHRWIVARNEHEANIKAIEILkaeAKTLGILRRDEDVLDTWFSSGLFPFSVFGWPEK-TPDFEAFYPTTLLETGLDILFFWVARMVMLGLQLTNHLPFTTVYLHAMVRDKEGRKMSKSLGNVIDPLEVIDgcsidqliaklhsgnlrqteitraekahrddfpdgipKCGTDALRAGLLAYTVQGRDINLD 570
                 89*************************************************************************************99999999************************777776777789**********************.............................9**************966789999999836****************************************************************99955538*****************************************************************999**************************************9999999988855541455566777777777888888884444455678**************************.**********************************************************************************************************************************986 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.36   7.1e+02      73      83 ..     163     173 ..     161     175 .. 0.90
   2 !  143.9   0.0   1.4e-45   2.8e-42       1     152 [.     623     779 ..     623     780 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.36
   PF08264.8  73 llrllaPfmPf 83 
                 +++ll+Pf P+
  MMETSP0890-20130614|5160_1 163 GMQLLHPFFPH 173
                 589*******9 PP

  == domain 2    score: 143.9 bits;  conditional E-value: 1.4e-45
   PF08264.8   1 drwilselnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaeds.rr.aqtvlaevletllrllaPfmPfltEelwqrl....eeellgkkesimlaewPedseel...eeele..eeevellkeivkairklrselkikpsselkvv 152
                 dr ils+l+ ++ +v+++++ey f+++++aly ff ndlcd+ylelvkp+ y+es+++  ++ a ++l+ +l+++lr l+P++Pf+tEelwqrl    e    ++ +sim a++P +s+ l       +  e++++ + + v+a r+lr++++i +++++k  
  MMETSP0890-20130614|5160_1 623 DRFILSRLSYALDTVNKSLNEYAFADVVQALYAFFLNDLCDVYLELVKPIVYNESEKSMqKNnALQTLWICLDAGLRALHPICPFVTEELWQRLprppE--DAKNLGSIMTAAYP-TSTTLpprL---QllETDIAKFLDCVTAGRSLRNQYNITNKTPAKFF 779
                 89***************************************************9986669888********************************9542..45677*********.776664443...23499*************************99865 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.65   1.3e+03      69     134 ..      22      85 ..      16     109 .. 0.72
   2 !    8.9   0.0   0.00024      0.46     179     238 ..     300     359 ..     276     371 .. 0.77
   3 !   13.8   0.0   7.6e-06     0.015     312     350 ..     477     516 ..     453     527 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHT---SB---TTSHHHHHHHHHHHHHHHH---EEEEEEEEEEBTTTTB---GGG CS
   PF09334.6  69 kvseefkelfkklnisfDkfirTtseehkelvqeffkklkekgliyekeieqlYcvsderflpdry 134
                 ++ ++ ++l+++++ + ++f  T ++   ++v e f +l++ gl+y+++    +++s ++ ++d +
  MMETSP0890-20130614|5160_1  22 RICQQLRRLASSVDWNRERF--TMDPVCAHAVTEAFVQLHDAGLMYRDSRLINWSCSLKSAISDLE 85 
                 55566666666666666666..6677788899999999*******999988888888887777766 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00024
                 EEEEEEEE-GGGTHHHHHHHHSS-....--HHHHHHHHHHH------EE-EE------B-S CS
   PF09334.6 179 keeehyffklskfeeklkewikenkel.pkenvkevlkewlkegLkdlsisrdlkwGipvp 238
                   + ++f + ++++ +  + +++ + +  ++  ++   +wl++ ++++++sr+l wG +vp
  MMETSP0890-20130614|5160_1 300 LVQPQWFVDCNDMARRACDAVRSGELSiLPKIHEKTWFHWLEN-VRPWCVSRQLWWGHQVP 359
                 4458899999999999999996665555777777777799977.****************9 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 7.6e-06
                 -SB--B---EE.E---B-BTTTTBS-BHHHHTTTS-HHHH CS
   PF09334.6 312 pkkvvahgylt.vegekmSkSrgnvvdpeelleelgvdal 350
                  ++v+ h ++   eg+kmSkS+gnv+dp e+++ +++d+l
  MMETSP0890-20130614|5160_1 477 FTTVYLHAMVRdKEGRKMSKSLGNVIDPLEVIDGCSIDQL 516
                 4556666666525789*****************9999986 PP

>> PF10458.4  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.6   4.9e-09   9.6e-06       1      60 [.     841     900 ..     841     904 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.9e-09
   PF10458.4   1 DlekeraRLeKelaklekeierlqkKLsnpgFvakAPaeVVeeekaklaeleeqleklke 60 
                 D+++e+ +L K++a+l+  i + ++K  np + +k   eV  +e +kl+++ e +++  +
  MMETSP0890-20130614|5160_1 841 DIDAEILKLRKQIAELDPLITKFENKRDNPAYTSKCKPEVLAKEAEKLTQYTERRQAALD 900
                 9***************************************************99887655 PP

>> PF13603.1  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.079   1.5e+02      20      51 ..     130     161 ..     114     163 .. 0.83
   2 !   20.3   0.0   1.3e-07   0.00024      85     145 ..     162     224 ..     160     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.079
   PF13603.1  20 eeklevfttrpdtlfGvtflalapehplvkkl 51 
                  +++ v ttr +t+ G   +a+ p+ p  kkl
  MMETSP0890-20130614|5160_1 130 GDEVIVATTRLETMLGDVAVAVHPNDPRYKKL 161
                 4689999***************9999977765 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.3e-07
   PF13603.1  85 tglkaihPlt.gekipvwvanf.vlmeygtgavmavPahdqrDfeFakkynlpikqvikpede 145
                 +g++ +hP+  ++++++ + +  v m+ gtg+v   Pahd +D+e  k++ lp+ ++ +++++
  MMETSP0890-20130614|5160_1 162 HGMQLLHPFFpHRQMDIILDDIlVDMNLGTGCVKITPAHDPNDYECGKRHSLPFITIFSRDGT 224
                 5788999998899999999996256******************************99986553 PP

>> PF12761.2  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.4e-07   0.00028      90     150 ..     838     898 ..     820     908 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
   PF12761.2  90 atqdtdwEevrLrreLaeLeeklekvqkesekrkkksknesalvkkeleqLLkYkeeqlre 150
                    d d E  +Lr+++aeL+ +++k ++++++ + +sk + +++ ke+e+L +Y e++   
  MMETSP0890-20130614|5160_1 838 GLVDIDAEILKLRKQIAELDPLITKFENKRDNPAYTSKCKPEVLAKEAEKLTQYTERRQAA 898
                 5568899************************9999999999*************9987655 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05     0.062     236     281 ..     476     521 ..     453     533 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.2e-05
                 --EEEE-----EEETTBE--TT-----BHHHHHTTS-HHHHHHHHH CS
  PF01406.14 236 qlvkywlhnghlkiegekmsksLknfltikdvlkkfdprqlRllll 281
                 +++  +lh+ +   eg+kmsksL+n++   +v+   +  ql   l 
  MMETSP0890-20130614|5160_1 476 PFTTVYLHAMVRDKEGRKMSKSLGNVIDPLEVIDGCSIDQLIAKLH 521
                 678899***9999**************9999988887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:01.40
# Mc/sec: 1557.63
//
Query:       MMETSP0890-20130614|5166_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-34  118.1   1.2    3.4e-34  116.8   0.9    1.7  1  PF04366.7  Family of unknown function (DUF500)
    0.00043   20.2   1.1     0.0043   17.0   0.1    2.7  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0008   19.1   0.1      0.002   17.8   0.1    1.6  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.9   7.4e-38   3.4e-34       3     124 ..     209     333 ..     207     335 .. 0.96

  Alignments for each domain:
  == domain 1    score: 116.8 bits;  conditional E-value: 7.4e-38
   PF04366.7   3 glgaGfqiGveitdvVivlntkealeaftk.gklslGadlsvaagpvGrgaeadtdvse.gsapvysysksrGlfaGvslegtvlterkdanakfYg.rkvtvkdIlkgeveappaakkLlevlk 124
                 g+++G+qiG++i d+ ivlnt +a+eaf+  g++++G+++ ++agpvG++ ea + +++   ap+++ys s+G+f+Gvsleg+v++er + n++ Y   ++ +++Il+g+++a+p a kLl+ l+
  MMETSP0890-20130614|5166_1 209 GMSFGIQIGAQIADFLIVLNTLQAVEAFSGgGQVTIGGQIGAVAGPVGASREAGVVAQQsAIAPIFTYSISKGVFVGVSLEGSVINERSSVNERHYSmPGIRAQQILSGQIQATPDAGKLLADLA 333
                 89*********************************************************9899**********************************9*******************99987765 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   9.5e-07    0.0043      11      77 ..      54     115 ..      45     119 .. 0.79
   2 ?    0.8   0.0      0.11   5.1e+02      11      43 ..     177     208 ..     173     222 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.5e-07
                 H---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS.EEE CS
  PF00595.19  11 glGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkg.evt 77 
                 +lG++++        +  vs +vpgg ae+ g+  +D++++v+ ++v   +  +a+ ai++ ++ ++t
  MMETSP0890-20130614|5166_1  54 QLGLTVSDHGG----EGLVSAIVPGGEAERIGVALNDRVIKVGTTTVK--TYKDAIVAIRNHTErPMT 115
                 68888887666....89**************************99999..556666666665544554 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.11
                 H---EEEESSTTSSSSEEEEESTTT.HHTTTTS.B CS
  PF00595.19  11 glGfslkggsdkrdkgifvsevvpg.gaaeagg.l 43 
                 +lGf l+       +g++v++++ g +a+ a g +
  MMETSP0890-20130614|5166_1 177 KLGFALSARIG---TGLVVARTSGGwSAPSAIGtI 208
                 78999999888...69******9999998887655 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   4.3e-07     0.002       1      60 [.      53     110 ..      53     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.3e-07
   PF13180.1   1 gdiGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslllkkk 60 
                 + +G +vs+  +  + lv  + +++ a++ g++ +D ++kv+ ++vk+ +d + +++++ 
  MMETSP0890-20130614|5166_1  53 PQLGLTVSDHGG--EGLVSAIVPGGEAERIGVALNDRVIKVGTTTVKTYKDAIVAIRNHT 110
                 579999999998..667899*********************************9999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:01.04
# Mc/sec: 864.07
//
Query:       MMETSP0890-20130614|5171_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-77  258.8   0.0    3.5e-77  258.3   0.0    1.3  1  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
    6.9e-30  103.1   0.0    1.8e-29  101.8   0.0    1.7  1  PF02787.14 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
    2.1e-25   88.8   0.0    2.9e-11   43.3   0.0    3.4  2  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
    4.8e-12   45.8   0.0    8.7e-12   45.0   0.0    1.4  1  PF13535.1  ATP-grasp domain
    2.9e-06   26.6   0.0    4.9e-06   25.8   0.0    1.3  1  PF02222.17 ATP-grasp domain
    1.9e-05   24.0   0.0      4e-05   22.9   0.0    1.5  1  PF07478.8  D-ala D-ala ligase C-terminus
  ------ inclusion threshold ------
      0.043   13.5   0.0       0.09   12.5   0.0    1.6  1  PF02655.9  ATP-grasp domain
        0.5   10.4   2.4        1.1    9.3   0.4    2.7  3  PF13380.1  CoA binding domain


Domain annotation for each model (and alignments):
>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.3   0.0     2e-80   3.5e-77       1     210 [.     193     397 ..     193     398 .. 0.98

  Alignments for each domain:
  == domain 1    score: 258.3 bits;  conditional E-value: 2e-80
                 SHHHHHHHHHH---BB---B-B..SSHHHHHHHHHH-.---EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEE..TTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH----CCC CS
  PF02786.12   1 Dkesakealkkinvpvvpssaapvetleealaiakei.gyPviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLee 210
                 D+e +k+ l+ki++pv+ s+a+  +++++al++a+++ gyP++ +aaf+lGG+G+++++d e+l++l++kala +      +q+l+eks+ g+ke+E+ev+rD+++n+itvc++en+++l  +t++++++APsqtL+++e++ lr aa++vvr++g+vg+++++++l+p+skey viEvN+Rls++sala+kaTG++l+++aak+a+g +L++
  MMETSP0890-20130614|5171_1 193 DREIFKNELAKIGEPVATSVAV--TSVKDALEAAENVtGYPCMARAAFALGGLGSGIVQDAEQLEKLARKALAVS------PQLLIEKSMLGWKEVEYEVVRDSADNCITVCNMENFDPLgvHTGDSMVIAPSQTLSNDEYHFLRDAALRVVRHLGIVGECNIQYALHPTSKEYAVIEVNPRLSRSSALASKATGYPLAFVAAKLAMGVHLPQ 397
                 9********************9..9*********98659************************************......8********************************************************************************************************************************987 PP

>> PF02787.14  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   1.1e-32   1.8e-29       3     121 .]     483     622 ..     481     622 .. 0.86

  Alignments for each domain:
  == domain 1    score: 101.8 bits;  conditional E-value: 1.1e-32
  PF02787.14   3 eklkkptderlfaiaealrrgvs......veeiheltkidpwFleklkeivele..eelkk.............eelleellreaKklGfsDaqiakllgvteeevrklrkelgikpvykrvDtcAaeFeaktpylYsty 121
                 ++++ ptd r++ ia+al rg+s      v+ +h+l+kid+wFl++l  i+ ++  e+l k              ++l+e++ ++KklGfsD+qia  +++te +vr  r +lg+ p +k++Dt+A+eF+a t+ylY+ty
  MMETSP0890-20130614|5171_1 483 DDIRIPTDGRIWKIAQALYRGASgdsrwgVDAVHDLSKIDKWFLSRLFPIATASadENLWKqlsqaisstndisCPNLKEQFLRLKKLGFSDKQIATRCNATETAVRTTRLSLGVEPCVKQIDTLAGEFAAATNYLYTTY 622
                 6899***************996433344499*******************977533333334555888777666566777***********************************************************9 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.7e-14   2.9e-11       3     109 ..      60     187 ..      59     188 .. 0.89
   2 !   39.9   0.0   1.9e-13   3.2e-10       5      63 ..     648     709 ..     645     712 .] 0.94

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.7e-14
  PF00289.17   3 kkvlianrGei...........avriiralrelgietvavnsnpdtvst.............dvrladelyflgpaeasesYldveaildiaeke...gvdavhpGygflsenaelaeace..kagvkfiGpsaea 109
                 kkvl +++G             + ++i+al+e+g+e+v++n n ++v+t             d+++ad+++f++        ++ + + +++ +e   ++ + ++G+++l++  el++++   k+gv+++G++++a
  MMETSP0890-20130614|5171_1  60 KKVLLLGSGGLsigqagefdysGAQAIKALKEEGVEVVLMNPNIASVQTnvdpsstaaqrraDPSAADHVFFIP--------VTPAFVEQVIIREkpdAILISMGGQTALNCGIELHNKGIfaKYGVRVLGTQIDA 187
                 899******9999*******************************999996666666667777777788888888........9*********99978889999*****************9999********9987 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1.9e-13
  PF00289.17   5 vlianrGei...........avriiralrelgietvavnsnpdtvstdvrladelyflgpaeasesYldv 63 
                 vl++++G++           av+++ralr  g + +++n+np+tvstd++++d lyf++        l++
  MMETSP0890-20130614|5171_1 648 VLVLGSGPYrigssvefdwcAVSAMRALRAAGARGIMINCNPETVSTDYDECDALYFEE--------LSL 709
                 9*********************************************************9........555 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   5.1e-15   8.7e-12      10     182 ..     199     370 ..     191     372 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 5.1e-15
   PF13535.1  10 ellaeaglpvprfalvdseedleaaaeeig.fpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyieG.deysvdglvl.dgel.vflgisryletsppdfsdgaelgsvspseepleealrelaerllkalglkngvfHlEfkltpd.GrlvliEinaRpgGa 182
                   la+ g pv+ +++v+s  d+ +aae++  +p+ +  a   g lg  +v+da++le++++++ a ++    ++l+E+ + G  e+ ++++ +  +++  ++++   ++    + +d+  + + +  ++++ + lr++a r++++lg+  g +++++ l+p+  ++ +iE+n+R+  +
  MMETSP0890-20130614|5171_1 199 NELAKIGEPVATSVAVTSVKDALEAAENVTgYPCMARAAFALGGLGSGIVQDAEQLEKLARKALAVSP----QLLIEKSMLGwKEVEYEVVRDsADNCiTVCNMENFDPL-GVHTGDSMVIAPSQTLSNDEYHFLRDAALRVVRHLGI-VGECNIQYALHPTsKEYAVIEVNPRLSRS 370
                 556778999*******************9999***************************999999999....**********99*****999987777244444444433.555445444444556666777****************.*************************9765 PP

>> PF02222.17  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.9e-09   4.9e-06       2     160 ..     202     366 ..     201     373 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.9e-09
                 HT-------EEEEEHH.HH-------.---EEEEES-------------------------..---EEEEEE----SEEEEE---B-----B----EEEEEE----EE...EEEEEEE.....--HHHHHHHHHHHHHTT-----EEEEEE-----.EEEEEEESS CS
  PF02222.17   2 eelglpvprflaveskeeleeaveel.glpvvvKarrlgydGkGqsvvkseeeleqaleal..keeklivEefvpfekElsvlvvRsveGevafypvvetvqkdgilr...lsvapaevsek.qqkkaeeiakkiveeLggvGvlavElFvledgeellvnElapR 160
                 ++ g pv++++av+s +++ ea+e++ g+p++ + +  +  G G+ +v+++e+le++++++   + +l++E+ +   kE+   vvR+   +++++  +e+    g+     +++ap+++ ++ + +   + a ++v++Lg+vG   +   +  +++e +v E+ pR
  MMETSP0890-20130614|5171_1 202 AKIGEPVATSVAVTSVKDALEAAENVtGYPCMAR-AAFALGGLGSGIVQDAEQLEKLARKAlaVSPQLLIEKSMLGWKEVEYEVVRDSADNCITVCNMENFDPLGVHTgdsMVIAPSQTLSNdEYHFLRDAALRVVRHLGIVGECNIQYALHPTSKEYAVIEVNPR 366
                 577889*********9965555555449****99.999********************999888999*******999*********88888999999999999888743338999988766615556677777**************9999999999999999999 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.3e-08     4e-05      22     173 ..     218     365 ..     201     374 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.3e-08
                 --H..HHHHH----EEEEE---------EEESSGGGHHHHHHHHHTT-SSEEEEE--.---EEEE--EE---EE------EE---SSS-HHHHH..C-TT-EE-SS----HHHHHHHHHHHHHHHHHTT-----EEEEE-.-.----EEEEEES CS
   PF07478.8  22 keklekvveklgypvfvKpareGSSvGiskveseeeleeaieeafqydekvlveeai.egreievavlgneklevsevgeivlkkgfydyeekyelidssaeievpakleeeveekikelakkaykalglkGlaRvDffl.teegeivlnEvNt 173
                 k++le+ ++  gyp++ ++a +   +G   v+++e+le+  ++a+  + + l+e+ +   +e+e  v+ +++    +++ +   ++f         +++s+ i     l++++++ ++++a+++ + lg+ G + +   l  ++ e  + EvN+
  MMETSP0890-20130614|5171_1 218 KDALEAAENVTGYPCMARAAFALGGLGSGIVQDAEQLEKLARKALAVSPQLLIEKSMlGWKEVEYEVVRDSAD---NCITVCNMENFDPLGVH---TGDSMVIAPSQTLSNDEYHFLRDAALRVVRHLGIVGECNIQYALhPTSKEYAVIEVNP 365
                 34467789999**********9999******************************99789*********5554...44444444444333333...4567777777789999************************999955667778889995 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.2e-05      0.09     116     159 ..     324     368 ..     206     370 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.2e-05
   PF02655.9 116 lkeelvelaeevvealegllGyvGvDlvlkd..eepyviEvNPRlt 159
                 + + l+++a +vv++l g++G + +   l+   +e  viEvNPRl 
  MMETSP0890-20130614|5171_1 324 EYHFLRDAALRVVRHL-GIVGECNIQYALHPtsKEYAVIEVNPRLS 368
                 33446889999*****.99**9999999876668999*******96 PP

>> PF13380.1  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   0.00064       1.1      16      87 ..      82     156 ..      72     267 .. 0.86
   2 ?   -2.6   0.0       3.2   5.5e+03      26      37 ..     356     367 ..     348     381 .. 0.75
   3 ?   -3.3   0.0       5.4   9.2e+03      94     109 ..     672     687 ..     666     693 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00064
   PF13380.1  16 snkvlrylqekgypvipVnpkeeeilgvkvyaslaedl..pvdlvsvftppervpavveea.lalgakavwfqpg 87 
                 + ++++ l+e+g++v++ np+  +++     +s+a++   ++ +++ +    ++pa ve++ +++++ a+ +  g
  MMETSP0890-20130614|5171_1  82 GAQAIKALKEEGVEVVLMNPNIASVQTNVDPSSTAAQRraDPSAADHVFFIPVTPAFVEQViIREKPDAILISMG 156
                 67899*****************9999965445555322457778888888899******9978889999988777 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.2
   PF13380.1  26 kgypvipVnpke 37 
                 k+y vi Vnp+ 
  MMETSP0890-20130614|5171_1 356 KEYAVIEVNPRL 367
                 778899999986 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 5.4
   PF13380.1  94 aeaaeeagirvvgpnC 109
                  +a+++ag r ++ nC
  MMETSP0890-20130614|5171_1 672 MRALRAAGARGIMINC 687
                 3444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.97u 0.51s 00:00:01.48 Elapsed: 00:00:00.97
# Mc/sec: 1758.98
//
Query:       MMETSP0890-20130614|5174_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-17   61.5   0.1    1.4e-16   60.6   0.1    1.5  1  PF00849.17 RNA pseudouridylate synthase
    2.1e-11   42.9   0.1    4.3e-11   41.9   0.1    1.6  1  PF01479.20 S4 domain
  ------ inclusion threshold ------
      0.096   12.1   0.0        0.2   11.1   0.0    1.5  1  PF13275.1  S4 domain


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.1   3.1e-20   1.4e-16       2     162 ..      99     246 ..      98     248 .. 0.65

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 3.1e-20
  PF00849.17   2 lvvvnKPagvpvtpeakggsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahl 162
                 l++++KP gv++t  + +   k    +  +s++++ +++l++v+RLD +tsGlll++ s+e+ ++l +  ++rk+ K+Yla+++   + +++  + +  +++     +  +     +  ++++l  l+     +++++++ +  ++l   +G+++ +R++l
  MMETSP0890-20130614|5174_1  99 LLAYHKPVGVHSTMSD-QLGRKDLVSELFNSVPRSWQRSLHPVGRLDADTSGLLLFSSSGELTHRLLH--PKRKINKQYLAHCH--LSDTCDLDQDDTFQLLST---RLETGVLTATGTHRAKLISLQ-----KVQENQNLIIQIRLLVSEGKHRMVRRML 246
                 5799************.777777788888999999*********************************..*************6..333333333333332111...111111112222222222222.....2233344444444444566666666665 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   9.5e-15   4.3e-11       1      48 []      37      84 ..      37      84 .. 0.96

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 9.5e-15
                TBHHHHHHHHH--SSHHHHHHHHHTT-EEE---B---TT-BE-TTSEE CS
  PF01479.20  1 rRLDkvLarlglassrseArqlIehGhVrVNGkvvkdpsyrVkpgDvi 48
                +RLDk+L+  g assr+    lI+ G+Vr+NG+++++ + +V+p+  i
  MMETSP0890-20130614|5174_1 37 VRLDKYLVDVGCASSRTLSASLIKKGRVRINGEIARSGKLKVDPDATI 84
                6******************************************98765 PP

>> PF13275.1  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.4e-05       0.2       8      62 ..      37      91 ..      32      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.4e-05
   PF13275.1  8 ItLgqlLKlaglvesGgeAKafiaegeVlvNGevetrRgkKlraGdvVeidgeei 62
                ++L++ L  +g+++s      +i++g V++NGe+      K+ ++ ++++dg  i
  MMETSP0890-20130614|5174_1 37 VRLDKYLVDVGCASSRTLSASLIKKGRVRINGEIARSGKLKVDPDATISLDGVVI 91
                6777777777777777777789***************999********9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.78
# Mc/sec: 875.59
//
Query:       MMETSP0890-20130614|5177_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-23   82.7   2.5    2.4e-23   82.7   1.7    3.7  4  PF04152.9  Mre11 DNA-binding presumed domain
  ------ inclusion threshold ------
        3.8    6.9   7.7       0.25   10.7   1.4    2.1  2  PF07557.6  Shugoshin C terminus


Domain annotation for each model (and alignments):
>> PF04152.9  Mre11 DNA-binding presumed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   1.7   3.5e-27   2.4e-23      11     175 .]       2     179 ..       1     179 [. 0.81
   2 ?   -0.9   0.8      0.17   1.2e+03     114     137 ..     231     250 ..     218     261 .. 0.38
   3 ?   -1.1   1.4      0.19   1.3e+03     116     141 ..     267     292 ..     257     310 .. 0.47
   4 ?   -1.3   0.3      0.22   1.5e+03     108     129 ..     358     378 ..     335     396 .. 0.59

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 3.5e-27
   PF04152.9  11 vRpfvmkevvLkeek......lekkpenkeevtkfLeekVeelIeeAkeewleeeeeseeeeaeeeepplPLiRLrVdysgefevenpqRFgqrFvgkVANpndvllfykkkkkkekkkkke.....keek...eeeeeeleeeeldelkvedlvkeyl..kaqqlslLpenglneAvkeF 175
                 +R+f+ +e +L++++         +  +++++ ++L++kVe+++++Ak +  +   + +++  +  +p+l LiRLrVd+ g f+  n++ +g  Fv+k ANp+ vllf+++ ++k+++k+ +     ++++   +e+ +  ee el e+++  lvk  l  ++++ls+L+e+++ +A++++
  MMETSP0890-20130614|5177_1   2 IRTFIHDEFILANDEdlaesrDRGEIIDETNIVQVLQNKVESMVTQAKDNI-SIP-RFSDQLFQLLQPELALIRLRVDHRG-FPKVNAKNLGASFVQKLANPEQVLLFSRSSTTKKNNKRDDtntinEDDDlpyQEDLDIDEEDELGENQLAALVKGRLlnSTKRLSVLDETQMLDALHDY 179
                 6************99988766566667899999******************.444.4455568999***************.***************************9877776532222344553333111333344566678899*******9998999***************998 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.17
   PF04152.9 114 kkkkkkekkkkkekeekeeeeeel 137
                 kkk +k+    ++++++ ++++e+
  MMETSP0890-20130614|5177_1 231 KKKPPKK----NTSSKHIHDDDEE 250
                 2222222....2222222222221 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.19
   PF04152.9 116 kkkkekkkkkekeekeeeeeeleeee 141
                 kk+k+ +++++k++++ +++++++ e
  MMETSP0890-20130614|5177_1 267 KKRKAPTATTKKKKTVPDSDDENDDE 292
                 33333322222222222222222222 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.22
   PF04152.9 108 dvllfykkkkkkekkkkkekee 129
                 +v++  k+  +k++ ++++++e
  MMETSP0890-20130614|5177_1 358 EVVIQAKRTASKKR-SRNDDDE 378
                 44444444444432.2222111 PP

>> PF07557.6  Shugoshin C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   3.6e-05      0.25       2      17 ..     329     344 ..     328     345 .. 0.93
   2 ?   -3.4   0.2      0.95   6.5e+03       5      11 ..     364     370 ..     363     370 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.6e-05
   PF07557.6   2 gRpsRRaakkVsYaEP 17 
                 +Rp+R+a++k sY+EP
  MMETSP0890-20130614|5177_1 329 ARPRRTARAKQSYVEP 344
                 7********99****9 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.95
   PF07557.6   5 sRRaakk 11 
                 +R+a+kk
  MMETSP0890-20130614|5177_1 364 KRTASKK 370
                 8***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1503  (0.109933); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.42s 00:00:01.69 Elapsed: 00:00:00.99
# Mc/sec: 1004.53
//
Query:       MMETSP0890-20130614|5181_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-144  481.2   3.4   3.3e-144  481.0   2.4    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.0   2.4  2.4e-148  3.3e-144       2     486 ..      33     525 ..      32     527 .. 0.97

  Alignments for each domain:
  == domain 1    score: 481.0 bits;  conditional E-value: 2.4e-148
  PF00118.19   2 adivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvd.k..reellkvartslnsklssresellsklvvdAvkiieeea..eldvgnigvikieggsledselieGvvldkgylspdmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkveeeeige..dkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaah..kkgenlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiika 486
                 + +v+t+LGPkG++kmlv++ g+++itndgatil ++ ++h+va+l+ve++ sqdee+GDGtt +v+Lag+Lle+aekl+++g+hp++i +g+e+a++ a ++Le+i+ +++ d +  +  l   a+t l+sk+++ +++++++++vdAv+++ + +  ++++++i+v+  +gg+led+eli+G+v+dk++ +p+mpk ++++k ++l c++e +k+ tk+k +++++e +ekl  +e+k++ +++ek+++ g+nlvi+++g+ddea+h+L  +++ a+r+v   +le +a++tg+++v r+e+l+  +lG+a+ v+e ++g+  +++++ie  ++ +++++til+rg +++++de++r+++da+++v++++kd++vv+GGGaae++++ ++ + a ++ g +q++i++fa+Al+ ip  LaeN+gl+p + lak+k+++  +++ +lg+d+ +    d++++ +++ l  k++ ++ a++v+++iL+id++i++
  MMETSP0890-20130614|5181_1  33 SGLVRTSLGPKGMDKMLVSPDGDVTITNDGATILDKMAVEHQVARLMVELSASQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRIAEGFEKACAVASQHLEEIAEKIEFDlHanDAVLIDTAMTTLSSKIINMHKKKMARIAVDAVLSVADVSrhDVNFDMIKVEGKPGGRLEDTELIRGIVVDKDFSHPQMPKCVKDAKMCILTCPFEPPKPkTKHKLDITSKEAYEKLHTNEQKYFTDMVEKVKKCGANLVICQWGFDDEANHLLLHHELPAVRWVGGVELELIAIATGGRIVPRFEELDAAKLGHAGIVREVSFGTskERVLIIE--DCAKSSAVTILVRGGNKMIVDEAKRSLHDAVCVVRNLVKDNRVVYGGGAAEVACALAVARVADDTLGHDQYAIRAFADALDDIPMALAENSGLSPLAELAKVKSQQiaQNKPYLGVDCLQLGTNDMKQQHVFETLIGKKQQMQLATQVVKMILKIDDVISN 525
                 568****************999**********************************************************************************9999888888536789******************************7777666799*********************************************************9*****************************************************************************************88*******99999987688999*9..********************************************************************************************************77645556***********************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.43s 00:00:01.34 Elapsed: 00:00:01.27
# Mc/sec: 998.17
//
Query:       MMETSP0890-20130614|5187_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   17.6   1.1     0.0019   17.3   0.8    1.0  1  PF09468.5 Ydr279p protein family (RNase H2 complex component)
  ------ inclusion threshold ------
      0.025   13.8   2.1       0.03   13.5   1.5    1.1  1  PF08961.5 Domain of unknown function (DUF1875)
      0.037   13.5   0.5      0.041   13.3   0.4    1.1  1  PF13500.1 AAA domain
      0.074   12.9   3.5       0.24   11.2   0.4    2.0  2  PF05756.6 S-antigen protein


Domain annotation for each model (and alignments):
>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   5.7e-07    0.0019     210     304 ..      15     114 ..       9     114 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.7e-07
                 HXXXGGGSXGGGGTXXXXXXXXXX.XXXXXXX.....XXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXX-------GGG CS
   PF09468.5 210 AidllksslpkealkellkellksvdFaplekylaelasdlskkreaeedaeaaesra.....ekkrkkeeeekkkkakeskgvkalkkvnasGmkkiss 304
                 A++l+++ ++ + ++e  + +l+   + +++kyl+++ +d+ k++ +ee  +++ s +       +    ++++  ++++s++  ++ +v  ++m +i++
  MMETSP0890-20130614|5187_1  15 ATGLIQKMYLHPRYQEFKNFELELKRVYAFHKYLQSIDEDSDKRQRIEEPFQNQQSGQqdnplHLNAPIHKKTQLAESNQSQQAVETQQVESEDMSSITD 114
                 899*****************99997777777777777767887777877777777777677664444455555556666778888889999999999986 PP

>> PF08961.5  Domain of unknown function (DUF1875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.5   8.8e-06      0.03      10      75 ..      33      98 ..      27     121 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.8e-06
   PF08961.5 10 rlslelqrd.shvkqlllieer.wkrakreerlkaqqatekdaaahlqashkasvedaegqsplsqky 75
                ++ lel+r  +  k l+ i+e   kr + ee  + qq+ ++d   hl+a+ +  ++ ae++    q+ 
  MMETSP0890-20130614|5187_1 33 NFELELKRVyAFHKYLQSIDEDsDKRQRIEEPFQNQQSGQQDNPLHLNAPIHKKTQLAESNQS--QQA 98
                567999996245577778877516788889999***************997666566655433..333 PP

>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   1.2e-05     0.041      33      94 ..      43     110 ..      16     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
   PF13500.1  33 gyfKPvqtglesdsdaelvqellgldetheeaeplalseplsphl.aaaregstidlekiv.....sk 94 
                 +++K +q+  e+ +++++++e ++++++ ++ +pl l++p+ ++   a+ ++s++++e  +     ++
  MMETSP0890-20130614|5187_1  43 AFHKYLQSIDEDSDKRQRIEEPFQNQQSGQQDNPLHLNAPIHKKTqLAESNQSQQAVETQQvesedMS 110
                 599999999999999**************************655415555555555665544444444 PP

>> PF05756.6  S-antigen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4     7e-05      0.24      16      76 ..      22      81 ..      16      99 .. 0.79
   2 ?    3.3   0.3     0.021        72      66      92 ..      98     124 ..      79     126 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7e-05
   PF05756.6 16 lyiyktygkvkntdkelsniygtkyylrsgllnekngkgqky.edleeegegenddeedsns 76
                +y++  y   kn + el  +y  + yl+s  ++e   k q+  e +++++ g++d+  + n+
  MMETSP0890-20130614|5187_1 22 MYLHPRYQEFKNFELELKRVYAFHKYLQS--IDEDSDKRQRIeEPFQNQQSGQQDNPLHLNA 81
                799999*********************98..4555566666515589999999998777665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.021
   PF05756.6  66 genddeedsnseesnndeenkliegqe 92 
                   + ++ +s++  s++d  n+li+ q+
  MMETSP0890-20130614|5187_1  98 AVETQQVESEDMSSITDSSNTLIKIQD 124
                 2223334556666789*******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1169  (0.0855032); expected 273.4 (0.02)
Passed bias filter:                      578  (0.0422762); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.84
# Mc/sec: 368.01
//
Query:       MMETSP0890-20130614|5185_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-26   90.8   0.2    2.4e-25   88.6   0.0    1.9  2  PF01661.16 Macro domain
     0.0031   16.6   0.5     0.0039   16.2   0.4    1.2  1  PF09310.5  POU domain, class 2, associating factor 1


Domain annotation for each model (and alignments):
>> PF01661.16  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   3.5e-29   2.4e-25       1     110 [.      34     148 ..      34     154 .. 0.89
   2 ?   -0.2   0.0      0.11   7.7e+02      53      99 ..     224     266 ..     201     268 .] 0.55

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 3.5e-29
                 EEEE-TT----S--HHHHHHHH--HHHHHHHHH...HHHHHH--TT-EEEEE-GGCSSSEEEEEE-------.--CCHHHHHHHHHHHHHHHH.HHTT-SEEEEE-TT------- CS
  PF01661.16   1 VNAaNsnllgggGvagaihraagkalkeeckel...ekkqggillGeavvtpaynlpakyvihavgplftss.kskeeeellasayknalela.eekgiksvafPaistGifgvp 110
                 VNAaN     ggGv+gai +a+g al ++  +l   ++++ ++++G+a++t +++l+ak+ ihavgp+++   ++k++++ll say +al++a e+++iks+afP++s+Gif+ +
  MMETSP0890-20130614|5185_1  34 VNAANIGCITGGGVDGAISKAGGLALHNARIALpilRDEYVRCETGDAKITVGGELKAKFCIHAVGPDYRIIkDKKQADDLLSSAYLAALAKAkENEHIKSLAFPLLSSGIFRGD 148
                 9***********************999987655111555666***************************97789999999************846678**************976 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.11
                 CSSSEEEEEE---------CCHHHHHHHHHHHHHHHHHHTT-SEEEE CS
  PF01661.16  53 lpakyvihavgplftsskskeeeellasayknalelaeekgiksvaf 99 
                   ++ v +av p  +  +++e++  +a++   ++++ e+   ++  +
  MMETSP0890-20130614|5185_1 224 VVPPLVANAVPPPQQ--EKEEDAVAIANNSTTVVAEEED--DNTTTI 266
                 445666677666543..4455555555555555444444..444444 PP

>> PF09310.5  POU domain, class 2, associating factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   5.7e-07    0.0039     188     245 ..     207     264 ..     151     268 .] 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.7e-07
   PF09310.5 188 anvlqyqpasstlpapqllplpvsvsepepqeledarrviGtlalekllleeeeddky 245
                 a+ +q q  sst+p  q++p  v+ + p pq++++   v  +     ++ eee+d++ 
  MMETSP0890-20130614|5185_1 207 AKLFQKQGYSSTVPNQQVVPPLVANAVPPPQQEKEEDAVAIANNSTTVVAEEEDDNTT 264
                 4567999*************99999999999988887777777778888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:01.39
# Mc/sec: 462.03
//
Query:       MMETSP0890-20130614|5189_1  [L=1045]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-34  117.6   0.0    5.7e-34  117.0   0.0    1.2  1  PF00501.23 AMP-binding enzyme
    1.3e-29  102.7   0.0    3.2e-27   94.9   0.0    2.3  1  PF07993.7  Male sterility protein
    8.6e-09   35.0   0.3    1.1e-07   31.4   0.1    2.6  2  PF01370.16 NAD dependent epimerase/dehydratase family
    6.1e-07   29.5   0.0    1.7e-06   28.0   0.0    1.9  1  PF00550.20 Phosphopantetheine attachment site
    8.6e-05   22.1   2.1     0.0085   15.6   0.0    3.2  3  PF08659.5  KR domain
     0.0012   19.0   0.0     0.0054   16.9   0.0    2.1  3  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
     0.0055   16.4   0.0      0.017   14.9   0.0    1.9  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.012   15.4   0.1       0.11   12.2   0.0    2.4  2  PF00106.20 short chain dehydrogenase
      0.038   12.5   0.0      0.092   11.3   0.0    1.7  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
        0.1   11.7   0.0        0.2   10.7   0.0    1.5  1  PF05368.8  NmrA-like family


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.0   4.2e-37   5.7e-34      34     415 ..      74     460 ..      58     463 .. 0.89

  Alignments for each domain:
  == domain 1    score: 117.0 bits;  conditional E-value: 4.2e-37
                 SHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTTECCS-EECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-TTCCHHCTTTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC..CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT..-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTT.........................EEE---EEEE-TT--EEEE--GG..GEEE----EEEHHHHHHHHHTSTTEEE CS
  PF00501.23  34 spewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivrtdkeedsvgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllplhfdgsilellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek..kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeeg..kevppgevGEllirgpgvakGYlkdpeltaeafdedgw.........................lyrTGDlgrldedGyleiiGRkk..dqikirGeniepgeiEsallehpgvae 415
                 s+  +++ +++l +G  +v + +++ + +++ +l+  ++ v++ d++++  +++  ++ +++  + +            + ll++ +  +ke     + + + dd +y i TSGtT   K Vml   +l+   ++++  ++ +++ rv +++        + ++a++ +G+tvvl  +  + d + +l+ + + +   ++++p+++ ++l+++ +    + ++ +++i + ge ++ +l +rl+ ++++ +++ +Y   E++ ++++++ +        i +plp+v++kivd+++    vp ge G + +   + + GY+ d+ +   +   d                           ++rTGDl+++ e++++e++ R    ++  i+G+ + p+ iEs l++hp+++ 
  MMETSP0890-20130614|5189_1  74 SIYGIVSTITALLSGFQFVEIPSNSEMSEMSRVLKLICPDVVLSDQNHYLQKKKLSAIGISPIFIAV------------DKLLENGKTQQKELLSFNNGW-NHDDGVYCIMTSGTTSLSKIVMLPTSALICASSYFEIDMNNSESFRVGLFWI------QYYMFAVWNHGGTVVLLNEKAFVDMNIFLRSVLDQQLDAVFVTPSIISACLDSVSEqeFIKAFALIKVIWFTGESVTIQLRRRLNNLLPQLKVISVYSTMESGDIAICRDETG-------IFKPLPNVSLKIVDPNDssSIVPLGEIGAIHVLTKWSMIGYFTDETQFIHKVSDDESvdslasissmsnvdvsspiltkkntFFRTGDLVKRGEQDNFEFVAREAnaHVKVIGGFKVFPQIIESLLMRHPQIEF 460
                 4556899999**************************************************9987766............456666666666666666777.99***************************99999888888877755555554......445889999*********************************************995555788999*******************************9999886666555444.......69**************9999*******************************776666**********************************************998566666*******************975 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   2.3e-30   3.2e-27       1     247 [.     701     927 ..     701     929 .. 0.92

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 2.3e-30
   PF07993.7   1 lTGaTGfLGkvllekllrtqpev.kiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepykellrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivg........esetGwiegsdlgldgllggvakgvlpeilgdpearldlvpvDyvan 247
                 +TG TG++G+++ + + ++  +v  +y+lvRa+++++a+ Rl + l k ++ ++++k++++++++++gD++ep+lgL +++ +     v+ iih AA+vn+ ++ ++l ++N+ G  +++ +a+ l+k +l++ ST    g+ e                     +++Y  sK +aE+++  a ++ g+p+ ++ ++ i          + +   +  +d+++ +l +++  g++pe   ++   + ++ vD +a+
  MMETSP0890-20130614|5189_1 701 VTGCTGYVGAYMTRCIAEQP-NVtVVYALVRADDDSTATSRLYSILSKRGIINQEKKSWWNKVICIAGDITEPYLGLRSSARDMP---VHGIIHAAAEVNMLKSKSALEAPNIFGCANAIAFAR-LQKSPLVFTSTILPVGNSE---------------------STGYRASKEVAEHICAIANEKYGVPINVLQLGDIGIgddlvnnlSDPAAVLPPDDYIIILLRACILIGKIPERSDWS---ISILNVDAIAR 927
                 8***********99999776.576*******************************99**********************999877...9***********************************.9999*******66555555.....................479*******************************999******8555567888888***************999997...9******9997 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.42   5.7e+02      50      97 ..      21      68 ..       9      73 .. 0.80
   2 !   31.4   0.1   7.8e-11   1.1e-07       1     166 [.     699     869 ..     699     873 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.42
                -TT-HHHHHHHHHHH.T.SEEEE--S---HHHCCCSHHHHHHHHT---H CS
  PF01370.16 50 dltdkdalerlfaee.qpdaVihlAaesgvdassedpadfieanvegtl 97
                ++++++a+e +  ++  ++ ++hlA     ++ +e+  d++e+ + ++l
  MMETSP0890-20130614|5189_1 21 NYKSRTAVEGADNQVlTFHQIVHLASVL-QHEIIETTRDTMEKKLTIAL 68
                56667777777777788999******64.66666********9998875 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 7.8e-11
                 EEEE--------HHHHHHHHH-TE.EE.EESSCSTCCCCCCHHH...................TBEEEB--TT-HHHHHHHHHHH.T.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
  PF01370.16   1 ilVtGatGfiGsalveallekgye.vv.nlirrtrseslatvri...................rvelveldltdkdalerlfaee.qpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetplgplspYaaaKlageklveayaeeyglnaiilr 166
                 ilVtG tG++G+++++ ++e++   vv +l+r+++ ++    r                    +v ++ +d+t++    r  a++  ++ +ih+Aae+    ++ ++++++   n+ g  n +  ar ++   ++f+s+    g+ ++            + Y a+K  +e+++  ++e+yg+++ +l 
  MMETSP0890-20130614|5189_1 699 ILVTGCTGYVGAYMTRCIAEQPNVtVVyALVRADDDSTATS-RLysilskrgiinqekkswwnKVICIAGDITEPYLGLRSSARDmPVHGIIHAAAEV----NMlKSKSALEAPNIFGCANAIAFARLQKS-PLVFTSTILPVGNSES------------TGYRASKEVAEHICAIANEKYGVPINVLQ 869
                 8********************99955589999988774444.44699**************************77665555555549999******97....55599999*****************7777.9***999655555534............44********************9987765 PP

>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.3e-09   1.7e-06       4      67 .]     581     645 ..     579     645 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 1.3e-09
  PF00550.20   4 leivaevlgldpdei.dldtdlfelGlDSllaveliarleeefgveipve...dlfelptlaelaayl 67 
                 + i+a+vl  + d i ++d ++f+lG  Sl +v+l arl  ef  ++p+    +++e ptl++++a+l
  MMETSP0890-20130614|5189_1 581 AKIWADVLSMPLDAIsSADMNFFDLG-GSLNFVKLKARLGIEF--NVPPQiidKIIEVPTLRNMVAAL 645
                 579*****96667778*********9.8***************..77777779***********9975 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.025        35      59     102 ..      15      58 ..       4      67 .. 0.84
   2 ?   -0.9   0.2      0.71   9.7e+02     117     140 ..     373     396 ..     370     400 .. 0.89
   3 !   15.6   0.0   6.2e-06    0.0085       3      92 ..     699     795 ..     698     808 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.025
                 E--TTSHHHHHHHH----TTS.---EEEE---------TTT--H CS
   PF08659.5  59 aaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemta 102
                 ++ ++d+ + ++++e ++++  + + +vh+A vl+ + ++ + +
  MMETSP0890-20130614|5189_1  15 EIGLSDNYKSRTAVEGADNQVLTFHQIVHLASVLQHEIIETTRD 58 
                 56678999999*************************99976544 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.71
                 HHHHHHHCC----EEEEEEEGGGT CS
   PF08659.5 117 wnLhelladepldffvlfSSiagv 140
                 + +h++++de++d +  +SS++ v
  MMETSP0890-20130614|5189_1 373 QFIHKVSDDESVDSLASISSMSNV 396
                 6689*****************976 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 6.2e-06
                 EEE----SHHHHHHHHHHHH-----EEEEE--.--------.-HHHHHH---..........-EEEEE--TTSHHHHHHHH----TTS.---EEEE----- CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaea.llaelealga..........evtvvaaDvadrdavealleeveaeepplrGvvhaAgvl 92 
                  LvtG +g +G+ ++r +ae+ + ++v +  +a  d++a++ l + l+++g           +v ++a D++++     l +++  +  p++G++haA+ +
  MMETSP0890-20130614|5189_1 699 ILVTGCTGYVGAYMTRCIAEQPNVTVVYALVRADDDSTATSrLYSILSKRGIinqekkswwnKVICIAGDITEPYL--GLRSSA--RDMPVHGIIHAAAEV 795
                 59********************9999998888555555544255667777878888888888*********99853..333333..3449********755 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.1   8.4e+03      13      35 ..     291     314 ..     288     325 .. 0.85
   2 ?   -3.6   0.0       8.7   1.2e+04      16      36 ..     449     469 ..     435     478 .. 0.72
   3 !   16.9   0.0     4e-06    0.0054       1      46 [.     698     743 ..     698     759 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.1
                 -HHHHHHHC.TSSEEEEEEEETTT CS
  PF01118.19  13 qellrlLee.hpelelvalvassr 35 
                  +l r+L++  p+l+++ ++++ +
  MMETSP0890-20130614|5189_1 291 IQLRRRLNNlLPQLKVISVYSTME 314
                 68999999999*******999887 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 8.7
                 HHHHHCTSSEEEEEEEETTTT CS
  PF01118.19  16 lrlLeehpelelvalvassrs 36 
                   lL +hp++e +   +++ s
  MMETSP0890-20130614|5189_1 449 ESLLMRHPQIEFALCGTTDIS 469
                 568888**9998877766655 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 4e-06
                 EEEEB--------HHHHHHHCTSSEEEEEEEETTTT---BHHHHSG CS
  PF01118.19   1 kvaivGatGyvGqellrlLeehpelelvalvassrsaGkklaeahk 46 
                 ++ + G tGyvG+ + r ++e+p++ +v+++ ++ ++ ++ ++ + 
  MMETSP0890-20130614|5189_1 698 RILVTGCTGYVGAYMTRCIAEQPNVTVVYALVRADDDSTATSRLYS 743
                 68899****************************9987777777766 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.017       2      37 ..     698     733 ..     697     764 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
                 EE--B--------HHHHHHHH.---EE-EE-----. CS
  PF01113.15   2 kvavvGasGrmGkevikaieeaedlelvaavdrkes 37 
                 +++v+G++G +G  ++++i e++++++v a++r + 
  MMETSP0890-20130614|5189_1 698 RILVTGCTGYVGAYMTRCIAEQPNVTVVYALVRADD 733
                 89******************************9883 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.5   6.9e+02      61     105 ..      18      61 ..       5      70 .. 0.77
   2 ?   12.2   0.0   8.2e-05      0.11       2      92 ..     698     796 ..     697     858 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.5
                 TTSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHH CS
  PF00106.20  61 vadrdalaallaeirkalgpldgvvhnagvlddgpleeltperle 105
                 ++d  + +++++ ++++  + + +vh a vl+++ +e++  +++e
  MMETSP0890-20130614|5189_1  18 LSDNYKSRTAVEGADNQVLTFHQIVHLASVLQHEIIETT-RDTME 61 
                 56666777889999999999999*********8877765.55444 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 8.2e-05
                 EEEE---------HHHHHHHHH.SSEEEEEEESS..SHHHHHHH..........HHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT CS
  PF00106.20   2 tvliTGGlgglGlalArwLvee.garhlvlvsrr.edapgaael..........iaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld 92 
                  +l+TG++g +G+ + r ++e+  + +++ + r   d+ + + l           +e ++ + +v  +a D++++     l +++r  + p++g++h+a+ ++
  MMETSP0890-20130614|5189_1 698 RILVTGCTGYVGAYMTRCIAEQpNVTVVYALVRAdDDSTATSRLysilskrgiiNQEKKSWWNKVICIAGDITEPY--LGLRSSAR--DMPVHGIIHAAAEVN 796
                 58********************777777777777644444444477789888755666666699999999999985..45666666..568999999998777 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.7e-05     0.092       1     125 [.     700     839 ..     700     861 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.7e-05
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvld..............lrespelleelsklqvkt...........vlegDvtdke.kleealegvdv..vihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvk 125
                 lVtG +G++G+++ r + e  +++ v  l               +         lsk ++++           ++ gD+t+    l+   +++ v  +ih aa +++l+  ++  + + n+ G  n +  ++ ++   lv+tS++  vg+ ++
  MMETSP0890-20130614|5189_1 700 LVTGCTGYVGAYMTRCIAEQPNVTVVYALVradddstatsrlysI---------LSKRGIINqekkswwnkviCIAGDITEPYlGLRSSARDMPVhgIIHAAAEVNMLK--SKSALEAPNIFGCANAIAFARLQK-SPLVFTSTILPVGN-SE 839
                 79***********99999998876665554222354444333331.........33333333344556666779******98636999999976633677777666666..77888999*********8877655.679*****999987.44 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015       0.2       1      37 [.     699     737 ..     699     751 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00015
                 EEESS----HHHHHHHHHHH..---EEEEE-S-----HH CS
   PF05368.8   1 ilviGaTGrqGksvvraslk..aghkvralvRdlksela 37 
                 ilv+G TG++G++++r +++  +   v+alvR  +  +a
  MMETSP0890-20130614|5189_1 699 ILVTGCTGYVGAYMTRCIAEqpNVTVVYALVRADDDSTA 737
                 8*******************644556899***8855544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.54u 0.39s 00:00:01.93 Elapsed: 00:00:01.28
# Mc/sec: 1956.40
//
Query:       MMETSP0890-20130614|5183_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   12.4   0.2       0.09   11.6   0.1    1.3  1  PF10536.4 Plant mobile domain


Domain annotation for each model (and alignments):
>> PF10536.4  Plant mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.6e-06      0.09     282     354 ..     711     783 ..     654     791 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.6e-06
   PF10536.4 282 fdivewylPeRvarqFgldQdiPppvsielliklnrtdergrawedyaakkqrlveewesrsesispe..phdee 354
                 f+    y P+R+ rq+  dQ++ p++    l ++++++   +++++ +++ ++ ++e  ++ +s++p   ++de+
  MMETSP0890-20130614|5183_1 711 FVGESNYAPHRIWRQLSPDQEVAPREYPYNLRTNDQSE--IHNKNSKHKQNNEILDESIKKNNSAAPDnqAMDES 783
                 555568***************98554433333333333..37777777777777777777777777776667766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1010  (0.0738736); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.26u 0.42s 00:00:01.68 Elapsed: 00:00:00.94
# Mc/sec: 2177.12
//
Query:       MMETSP0890-20130614|5193_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44   10.1   7.3        2.1    7.9   3.0    2.8  2  PF06203.9 CCT motif


Domain annotation for each model (and alignments):
>> PF06203.9  CCT motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.0   0.00015       2.1      13      37 ..      61      85 ..      42      86 .. 0.94
   2 ?    2.0   0.0     0.011   1.5e+02      16      24 ..      94     102 ..      91     107 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00015
   PF06203.9 13 ktRkFeKkirYesRKavAesRpRvK 37
                k+R+Fe  +rYes  ++ ++R R +
  MMETSP0890-20130614|5193_1 61 KQRNFEDDVRYESESQRIDTRRRAR 85
                89********************976 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.011
   PF06203.9  16 kFeKkirYe 24 
                 + eK+irY+
  MMETSP0890-20130614|5193_1  94 RHEKRIRYD 102
                 579*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 324.21
//
Query:       MMETSP0890-20130614|5190_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.002   16.4   1.9     0.0016   16.6   1.3    1.1  1  PF03547.13 Membrane transport protein
  ------ inclusion threshold ------
       0.03   12.8   6.5      0.041   12.3   4.5    1.3  1  PF04791.11 LMBR1-like membrane protein
      0.067   13.0   0.1       0.14   12.0   0.1    1.5  1  PF11149.3  Protein of unknown function (DUF2924)
       0.75    8.2  18.0        1.1    7.7  12.5    1.2  1  PF10428.4  RAM signalling pathway protein
        1.5    6.3   8.0        1.9    5.9   5.5    1.1  1  PF13779.1  Domain of unknown function (DUF4175)
        5.2    5.2  16.5        6.9    4.8  11.4    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
        7.2    4.1   9.4        9.6    3.7   6.5    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        9.2    5.3  29.2         13    4.9  20.2    1.1  1  PF12118.3  SprA-related family


Domain annotation for each model (and alignments):
>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.3   9.6e-07    0.0016     142     224 ..      10      98 ..       1     393 [. 0.71

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.6e-07
  PF03547.13 142 lflfesrgaklliseefp.etaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs.....stprpsnltnaei 224
                  + f+ ++  ++ +++++ ++++++ +++++++ + +++s+  +t++++ ++++ h++  k+n++ +++++      +++ +n+tn++ 
  MMETSP0890-20130614|5190_1  10 NNCFNNNNNNNTNNNNNStNNTNNNSTNNNNNNNSKSNNSNNNNTNNNNTNNKSNHTNNNKNNNNTNNKSNnksnnNSKSSNNKTNNNX 98 
                 56677777777777777766666666666666666666666888888888999999998888888888877666653344444444433 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.5   2.4e-05     0.041     209     301 ..      18     111 ..       8     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-05
  PF04791.11 209 essvddilesvdrl.srlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlksletlknkkaqrkva 301
                 +++ ++  +s +   +   ++++++ sks+  +++ +++ + + +sn++ +++ + +++++ ++ks++ + + ++++ ++ e+l++k      a
  MMETSP0890-20130614|5190_1  18 NNNTNNNNNSTNNTnNNSTNNNNNNNSKSNNSNNNNTNNNNTNNKSNHTNNNKNNNNTNNKSNNKSNNNSKSSNNKTNNNXEELYKKLHEITEA 111
                 555666666677777888899999999999999999999999*******************************************996555444 PP

>> PF11149.3  Protein of unknown function (DUF2924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   8.2e-05      0.14      64     125 ..      78     139 ..      38     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.2e-05
   PF11149.3  64 aekeekkkkkkkreerelapGtrLvRewkgqehevtvledGfeyegrtykSLsaiAraitGt 125
                  ++++++++ k++++++     +L ++ ++ +    vl+d ++  +++y+ L aiA++i  t
  MMETSP0890-20130614|5190_1  78 KSNNKSNNNSKSSNNKTNNNXEELYKKLHEITEAYRVLNDKYKNLDEKYQELDAIAKNIRST 139
                 2333444445577888888999************************************9766 PP

>> PF10428.4  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  12.5   0.00066       1.1     202     307 ..      19     127 ..       5     163 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00066
   PF10428.4 202 salessrsvvsnlqvttdvpip..ssngtsrsstqss.sakssaissgatprsgesfrslptsstssvn..agssldeaeedrideqlfekLetatklvlrv...lpqlteeis 307
                 + ++++   +s   ++++++     +n++s++s+ ++  ++  +++s++t +    ++ ++t++ s+++  ++s++ + + ++  e+l++kL+++t++  ++   + +l e+++
  MMETSP0890-20130614|5190_1  19 NNTNNN--NNSTNNTNNNSTNNnnNNNSKSNNSNNNNtNNNNTNNKSNHTNNN---KNNNNTNNKSNNKsnNNSKSSNNKTNNNXEELYKKLHEITEAYRVLndkYKNLDEKYQ 127
                 222222..122222333333210023333333333332222222223333333...33333333333332245555666666669********999875333111444444443 PP

>> PF13779.1  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.5    0.0011       1.9     624     709 ..      29     115 ..       7     168 .. 0.39

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0011
   PF13779.1 624 geegqgqqgqg.qqgqqqgqgqgqqqgqqgeegqqeeeslaerqqalreeleklkkelkgeggeageaaeealgeAeeaMedAeeaL 709
                 ++ ++++ +++ +++ ++++ ++++ +++++++++++ + +++ ++ +++ +++ ++ +++++++++++ e+l +  ++  +A + L
  MMETSP0890-20130614|5190_1  29 NNTNNNSTNNNnNNNSKSNNSNNNNTNNNNTNNKSNHTNNNKNNNNTNNKSNNKSNNNSKSSNNKTNNNXEELYKKLHEITEAYRVL 115
                 222221111110111111111112222222222222222223333333333333333333333333333333333333333333333 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.4    0.0041       6.9     369     466 ..      23     120 ..       7     171 .. 0.44

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0041
   PF09531.5 369 qskssgkeektssessskel.srlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdkkassiitkiqsklela.qvlkklqik 466
                  +  s+++++++s+++++++ s+  ++ +++ +++++ + +++ +++++ n+++++s  ++++++++++ + ++  +++++k+    e a +vl++ + k
  MMETSP0890-20130614|5190_1  23 NNNNSTNNTNNNSTNNNNNNnSKSNNSNNNNTNNNNTNNKSNHTNNNKNNNNTNNKSNNKSNNNSKSSNNKTNNNXEELYKKLHEITE-AyRVLND-KYK 120
                 2222222222222222222212222222222222222222222222222333333333333333333333333566666666666555.3333333.333 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.5    0.0056       9.6      44     126 ..      51     137 ..      17     203 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0056
                 XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....... CS
  PF01496.14  44 eseikkakielk.dekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelr....els 126
                 +++++++++++k +++++++ +++++ +  +++ ++ ++  ++ +++ e+L k+l+e++e   vl+ + + l+e+  +el     ++ 
  MMETSP0890-20130614|5190_1  51 NNNTNNNNTNNKsNHTNNNKNNNNTNNKSNNKSNNNSKSSNNKTNNNXEELYKKLHEITEAYRVLNDKYKNLDEKY-QELDaiakNIR 137
                 3344444444443333333333333455555566666677777777777777777777777777777777777743.33322222222 PP

>> PF12118.3  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  20.2    0.0075        13      18     114 ..      16     113 ..       3     153 .. 0.31

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0075
   PF12118.3  18 stsalsgantsesassassssenssnssvessssataetqs.knseaqstseeqfaevkgqaeaqasqaeeeaekaasekneeeeaaeeeeekqqaaa 114
                 ++++++++n++++++++ +s++n++n++++s++s+ ++t++ +++++++++++++++ ++++++++++++++++++++++n+ ee  ++  e ++a  
  MMETSP0890-20130614|5190_1  16 NNNNNTNNNNNSTNNTNNNSTNNNNNNNSKSNNSNNNNTNNnNTNNKSNHTNNNKNNNNTNNKSNNKSNNNSKSSNNKTNNNXEELYKKLHEITEAYR 113
                 22222222222222222222222222223333333333333222333333333333333333334444444444444444333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2978  (0.217817); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                       262  (0.0191633); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.52u 0.43s 00:00:01.95 Elapsed: 00:00:00.93
# Mc/sec: 1100.26
//
Query:       MMETSP0890-20130614|5194_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00075   18.6   7.9      0.034   13.2   3.0    2.4  2  PF07808.8 RED-like protein N-terminal region


Domain annotation for each model (and alignments):
>> PF07808.8  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   3.0   2.5e-06     0.034       8      39 ..      28      59 ..      15      63 .. 0.77
   2 !    7.6   0.1   0.00013       1.8      82     123 ..      61     102 ..      55     151 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.5e-06
   PF07808.8  8 klkkkeekkekelaekYrDRArERRkgknkdy 39
                +  + +++   + ++ YrDRArERR ++++ +
  MMETSP0890-20130614|5194_1 28 TVNESDDEGITKSQKVYRDRARERRRQVDDSQ 59
                4556677777888899**********988755 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00013
   PF07808.8  82 hLvKGLDfaLLnkvrselkkkedeeeekkekvekskekslqa 123
                  + KGLD+++L+k r + +      e  +++ e+  + +l +
  MMETSP0890-20130614|5194_1  61 LMHKGLDYSMLKKPRPNETPVPPPVESRTQDSEQARKIQLWL 102
                 578**********99653333322222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       750  (0.0548566); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.57
# Mc/sec: 1053.57
//
Query:       MMETSP0890-20130614|5197_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   20.7   0.0    0.00027   20.0   0.0    1.2  1  PF00069.20 Protein kinase domain
     0.0092   15.0   0.0      0.014   14.4   0.0    1.2  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     4e-08   0.00027     164     254 ..      49     142 ..      41     146 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4e-08
                 GS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC..---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH......HHHHHHHHHHT-SSGGGS--HHHH CS
  PF00069.20 164 YmAPEvllkakeytkkvDvWslGvilyellt..gklpfsgeseedqleliekilkkkleedepksssks......eelkdlikkllekdpakRltaeei 254
                 Y+APE+ + + + ++k+Dv+sl +i+ el++  ++ +f +     + ++++++ +     +  +s+ ++      +++ ++++ +l++dp +R+ a+ i
  MMETSP0890-20130614|5197_1  49 YCAPELTQ-GVDVDTKIDVFSLYLIVLELFNhdHRQIFIDC----SDSVYQHKTGAARAVEAATSTMNRsgyiccSKIVEILQHTLKPDPLARPEAAAI 142
                 ********.**********************4444666655....3333333333322222222222223466679******************99876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-06     0.014     169     257 ..      47     144 ..      38     146 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-06
                 GGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GT.........TTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12 169 vkWmapEslkekkftsksDvWsfGvllwEiftlgesp.........ypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                 + ++apE+ +   + +k Dv+s   ++ E+f++ ++          y++ + +  +    +++  +    c +++ e++++ ++ +p  Rp+ ++++ 
  MMETSP0890-20130614|5197_1  47 LCYCAPELTQGVDVDTKIDVFSLYLIVLELFNHDHRQifidcsdsvYQHKTGAARAVEAATSTMNRSGYICCSKIVEILQHTLKPDPLARPEAAAIRP 144
                 689*****************************988777777776655544333333333333344445679********************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.66
# Mc/sec: 2534.33
//
Query:       MMETSP0890-20130614|5202_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   10.4  16.3       0.16   10.2  11.3    1.0  1  PF03344.10 Daxx Family
       0.38    9.9  22.4       0.43    9.7  15.5    1.1  1  PF04652.11 Vta1 like
          2    6.6  25.2        2.3    6.4  17.5    1.0  1  PF10243.4  Microtubule-binding protein MIP-T3
        6.6    5.8  14.4        9.2    5.3  10.0    1.2  1  PF03353.10 Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  11.3   4.8e-05      0.16     463     623 ..       3     173 ..       1     195 [. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.8e-05
  PF03344.10 463 eeeeeeeeeeeeeeeadneeeedleassegegddeeeeedee........kndevakgi.rvseeqqkressvqpespke.epqepeavdaekegeesdeellaeeeplsshtelesvatveerdisskrklspepvstsleedsavvisetengnvsastpqeeqeeeer 623
                 ++e eee e e e++ d++  + +e+ s + +d++++++ ++        +++e+      ++e   +++ss +p  p++ +++++++  +ek+++  +e  ++ + + s+ t  ++ + ++  + ss+   +  + st++e+ s + +s+ + ++v a+  q ++  ++r
  MMETSP0890-20130614|5202_1   3 DKESEEELEKELEVSDDSDDHTKVEQLSLDGEDGTDKSKRKRkppsfwynEKEEPHYTRrSLNETMDEKNSSSVPVAPRKrKSKNQNSSPTEKSKKPRKETKTSRSRVKSQATTKSGDNAPDATNSSSTTATPSFTSSTQTEDTSPTLLSTNTRARVIADLFQAKDIAQKR 173
                 555566666677888888888899998876666666655555689999986667666653455555566666777666541566667788888888889999999999999999999999988888888888888889999999999999999999988888877766665 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  15.5   0.00013      0.43     192     338 ..       9     166 ..       1     185 [. 0.46

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00013
                 ....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX.......................................................XXXXXXXXXXXHHHHHH................. CS
  PF04652.11 192 aspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfp..spdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakp...slssakPtaqsassaqaqplqsvapqi..........a 338
                 + +k+ e s +s+ +++++ + s +  +g+d+++++++p +   +++++p+    s  e+ +++++s+ P aP    k++s++q+  P ++ +++++ ++ +    +s+++++  ++ +     s+ +a P+ +s++++  ++++  + ++          a
  MMETSP0890-20130614|5202_1   9 ELEKELEVSDDSDDHTKVE-QLSLDGEDGTDKSKRKRKPPSFWYNEKEEPHYTrrSLNETMDEKNSSSVPVAP---RKRKSKNQNSSPTEKSKKPRKETKTSRSRVKSQATTKSGDNAPDAtnsSSTTATPSFTSSTQTEDTSPTLLSTNTrarviadlfqA 166
                 3333333333333333333.33344444444444444444444444555555345888888888888888888...66666666666666665555555544444444444422222222222234444444444444444444333333355555555543 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  17.5   0.00067       2.3     105     246 ..       4     145 ..       1     189 [. 0.57

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00067
   PF10243.4 105 skkeeekrkekkkeekkkkeekekeeekerkqkeelkekrkpkekekekeKkkeeekdrekekererkkaserekkekkkdsknkkkdk.ekekkkeksrksekgkeeerskdeerekeedkgkdretnrakeeeeesrksse 246
                 ++ eee +ke + +++ ++  k ++ + +  +  ++++++++  +   +eK+++   +r  ++  ++k+ s+ +++++k++skn+++++ ek+kk+ k+ k   +  ++++  + ++++ d+ + + t+ a+++  +s + + 
  MMETSP0890-20130614|5202_1   4 KESEEELEKELEVSDDSDDHTKVEQLSLDGEDGTDKSKRKRKPPSFWYNEKEEPHYTRRSLNETMDEKNSSSVPVAPRKRKSKNQNSSPtEKSKKPRKETKTSRSRVKSQATTKSGDNAPDATNSSSTT-ATPSFTSSTQTED 145
                 333444444444444444444444444444333344444444444455899999999999999999999999999999999999999987777777777777777777766666666666666655555.5554444432222 PP

>> PF03353.10  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  10.0    0.0027       9.2     138     269 ..      18     176 ..       3     182 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0027
  PF03353.10 138 dddeddiiydgife..vdktrseqeaeeqdevdeveveEvke..eysanlaereeeesnlsrpeavkqsskneqapktqqqpdlsassesaniksastaresqpaskrteapksdnt.....................eaeqite..qvkrlfqeqPer 269
                 dd++d +  +++     d t+++++  + ++    e eE  +  +  ++++++++++s    p++ k++++n++++++ ++p+ +++   +++ks++t ++  +a++ t++++++ t                      a  i++  q+k+++q+ P+ 
  MMETSP0890-20130614|5202_1  18 DDSDDHTKVEQLSLdgEDGTDKSKRKRKPPSFWYNEKEEPHYtrRSLNETMDEKNSSSVPVAPRKRKSKNQNSSPTEKSKKPRKETKTSRSRVKSQATTKSGDNAPDATNSSSTTATpsftsstqtedtsptllstntRARVIADlfQAKDIAQKRPDA 176
                 344444444433223344455555555555544444444433003334444444455555566666777777777777777777766666666666655555444444444444444555555666666788888888888887666999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1332  (0.0974254); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.59
# Mc/sec: 804.20
//
Query:       MMETSP0890-20130614|5205_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.8   0.1      0.036   13.8   0.1    2.7  1  PF01145.20 SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.6e-06     0.036       6     174 ..     106     338 ..      19     352 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.6e-06
  PF01145.20   6 gevgvvvr..fGkvkr..vlepGlhfklP.fgekvtvvstrvqtldvsde..........................svtvptkDglnvtvdvtvryrvsdakkliaavaqeeenlenllrrllesalrevlsqmtldeil.........sn......rselaaelknelneq........................lqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiar 174
                 +e+ v+++    k+ r  v +p + +  P fge+++ +  ++ + + +++                          + ++ t+Dg ++ + v+++  + ++ kli ++    ++l + l + les+l  +  + +++ +          ++      +++ +  + n + e+                        ++++gie+ +v ++  d +pe+++++ ++ + ++ +  a+ a+
  MMETSP0890-20130614|5205_1 106 SEAIVIYQtaKEKLARlvVSGPATVC--PqFGERIHQFTWTQFENNEERVlgrinngikkctfqtlkigsllpqevRAKLTTNDGPSAILRVSLNLVIHNVEKLIDNT----DDLTADLANSLESDLIVLGRRLDASSLRnlrgvaalvEGtteeddAAAASHMMDNTISEKteipvviasqeppfrrafirlvrrCEELGIELRSVELRGLDASPELIERWSAEDNRVKAQSAAAEAK 338
                 44555544223333334444444333..55555555555555555555559999999999999999999999999899999999999999999999999999999999....666666666666666555533333333322122222222333333566666666666655555555555566666666666666*************************555555444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.91
# Mc/sec: 1277.18
//
Query:       MMETSP0890-20130614|5215_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 908.62
//
Query:       MMETSP0890-20130614|5211_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-24   84.6   3.8      2e-15   57.1   0.1    3.8  3  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    9.4e-17   61.0   1.0    4.6e-11   42.8   0.0    2.8  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.6e-16   60.1   0.0    4.6e-16   58.7   0.0    1.8  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    1.8e-10   40.1   8.2    2.1e-08   33.3   0.1    2.5  3  PF01134.17 Glucose inhibited division protein A
    1.7e-09   37.2   0.8    1.7e-09   37.2   0.6    2.1  2  PF12831.2  FAD dependent oxidoreductase
    3.6e-09   36.8   0.0      1e-08   35.3   0.0    1.8  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    2.1e-08   33.9   7.1    5.2e-07   29.4   0.5    2.7  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    1.3e-06   27.5   0.3    1.3e-06   27.5   0.2    2.2  2  PF01946.12 Thi4 family
    1.5e-06   26.8   3.7     0.0011   17.4   0.1    3.3  3  PF03486.9  HI0933-like protein
    3.6e-06   26.6   0.3     0.0022   17.5   0.0    2.4  2  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
      6e-06   25.4   2.8    0.00048   19.1   0.1    2.3  2  PF01494.14 FAD binding domain
    7.4e-06   24.9   1.7    7.4e-06   24.9   1.2    2.2  2  PF00890.19 FAD binding domain
    1.4e-05   24.6   0.0      0.087   12.2   0.0    2.5  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
    1.9e-05   23.6   6.6    0.00094   18.0   1.4    2.4  2  PF01266.19 FAD dependent oxidoreductase
    2.1e-05   23.6   0.3      0.021   13.8   0.0    2.8  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
     0.0002   20.2   3.5      0.026   13.3   0.1    2.3  2  PF05834.7  Lycopene cyclase protein
    0.00062   19.9   0.1       0.81    9.8   0.0    2.5  2  PF13478.1  XdhC Rossmann domain
     0.0016   18.0   0.2       0.37   10.3   0.0    2.4  2  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
     0.0046   15.8   0.0      0.015   14.1   0.0    1.8  2  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0054   16.8   0.2        1.5    8.9   0.0    2.7  2  PF13241.1  Putative NAD(P)-binding
     0.0087   15.5   0.0      0.049   13.0   0.0    2.0  2  PF00208.16 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
  ------ inclusion threshold ------
      0.038   14.2   1.9      0.071   13.4   0.0    2.5  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
      0.049   13.6   0.2       0.44   10.5   0.0    2.5  2  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
       0.13   11.7   0.7       0.53    9.7   0.0    2.2  2  PF04127.10 DNA / pantothenate metabolism flavoprotein
       0.19   11.0   1.0        5.3    6.3   0.0    2.7  2  PF02558.11 Ketopantoate reductase PanE/ApbA
       0.37   10.5   5.2       0.41   10.3   0.7    2.4  2  PF00899.16 ThiF family
       0.73    9.6   5.9       0.55   10.0   0.1    2.9  3  PF00106.20 short chain dehydrogenase


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   3.9e-18     2e-15       1     128 [.      42     192 ..      42     205 .. 0.76
   2 !   21.7   0.1   2.6e-07   0.00013       1     127 [.     212     318 ..     212     333 .. 0.71
   3 ?    5.4   0.0     0.025        13     172     197 ..     332     356 ..     318     359 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 3.9e-18
                 SEEEE----HHHHHHHHHHHTTSEEEEE...CSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH...................HHHHHHHHCTCEEEHCHEEEEEETTTTEE.EEEEEEEEEEEETEEEEEEESEEEE----B----TGCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali...ekeggtcvnrgclpkkllvevaegreelee.lal...................kvvdelekagieilleknvvkidsgskkv.vqeagavkadekgkgrdikydklviAtGarprtlgipg 128
                 d++++G+G+aGl+aak+ a+ g++v+li   + +gg c   gc+p+k+l+++++ +      +a+                   k vd++++  + +   +++ + ++g ++v ++   + k+  k ++ +++y kl+i+tG++p +++i  
  MMETSP0890-20130614|5211_1  42 DLLVVGAGSAGLTAAKFGADLGARVLLIerrQVLGGDCTWYGCVPSKALIAAGHAAAARMGaRAEkmlgkrkdleqqvvgsdvaKHVDQVRHSVYAL-ETPEILRSEHGVETVfGEAIFTSKNIVKVNEIKYSYWKLIICTGSKPLVPDIYK 192
                 689*************************8888899*****************999887776455599988888888888885544444443333333.225555556666655866666777788889999***************997753 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.6e-07
                 SEEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreeleelalkvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgip 127
                 ++++iG+Gp G++ a  +a+ g++v ++   g     rg lpk+ + e+ e  +       +++      +i+il +++  +   ++++    + ++ + ++ +g  +++d+l+iA+G ++ ++++ 
  MMETSP0890-20130614|5211_1 212 RLAVIGAGPIGCELAQACAKLGAEVSVL--VG----SRGLLPKERA-EAREIITR------AFI----DDNIKILEPPKGSRSLAKTAT---YESNIFQLQTFHGSILEFDRLLIAVGRKSVIPPTL 318
                 589*************************..55....899****998.44444433......344....567777555555555333332...344455556777889*************9999654 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.025
                 SSSSBBE-TTSBCSSTTEEE---TCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9 172 prggivVdeylrtsvpgiyaiGDvae 197
                 + ggi V+++l     + ya+GD+++
  MMETSP0890-20130614|5211_1 332 KSGGIIVNKFLSF-AANAYAAGDCIA 356
                 6899*******55.99********96 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   2.4e-05     0.012       2      34 ..      43      75 ..      42      79 .. 0.93
   2 !   42.8   0.0   9.2e-14   4.6e-11       1      58 [.     212     269 ..     212     276 .. 0.97

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.4e-05
                EEEE---HHHHHHHHHHHHTTSEEEEEESSSSS CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierrdrl 34
                ++vvG+G  Gl +A + a+lg++V +ierr+ l
  MMETSP0890-20130614|5211_1 43 LLVVGAGSAGLTAAKFGADLGARVLLIERRQVL 75
                79***************************9866 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 9.2e-14
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievl 58 
                 r++v+G+G iG+ElA+a aklg++V+v+  +  ll+++ +e+++i+++ + + +i++l
  MMETSP0890-20130614|5211_1 212 RLAVIGAGPIGCELAQACAKLGAEVSVLVGSRGLLPKERAEAREIITRAFIDDNIKIL 269
                 799****************************************************997 PP

>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     9e-19   4.6e-16       1     105 [.     393     507 ..     393     512 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 9e-19
                 BEEEEESSSEEEE---..-HHHHHHHT.....EEEEEEEECCGHHTTTTT..CCEEEEEE....EETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGG CS
  PF02852.17   1 vpsvvftdpeiasvGl..teeeAkkagge...ikvgklpfkandralayae.tkgfvKlv....vdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsea 105
                 +p+v++tdpe++svG+   e   k  +++   i++++ + ++ndral ++e  + fv lv     + +t ++lG +++G +a+el+ e+a++ +++l++ ++a+ ++++Pt++ +
  MMETSP0890-20130614|5211_1 393 MPRVTYTDPEVGSVGIadVETAVKVLNVPieqIEIISYKTSHNDRALCEREdPDAFVELVllilSNGKTARILGGTVIGSRAGELLCEIALIAQNKLSTLQVAKSLHPYPTHAFV 507
                 699*************54344445555558899*******************777777652221678*********************************************944 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   4.1e-11   2.1e-08       1     150 [.      42     183 ..      42     201 .. 0.80
   2 !   12.0   0.2   0.00012     0.063       3      28 ..     214     239 ..     212     258 .. 0.88
   3 ?   -3.4   0.3       5.9     3e+03     359     385 ..     349     377 ..     345     379 .. 0.67

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 4.1e-11
                 SEEEE-------HHHHHHHH----EEEE...ES-GGG-----SSSEE-------HHHHHHH-------HHHH--EEEEEESTT---TT-EEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEE--BSSSBB---EE----B-EESEEEE---- CS
  PF01134.17   1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 d+ V+G+G AG+ AA   a lGa+vlLi   +   +++ + +C ps   ia+g+  +   ++g    k+  k +   ++  +  G  v ++  qv  + y+ e  e l++e+ +e + +e+          k +v+ ++ +++  + +i tG+
  MMETSP0890-20130614|5211_1  42 DLLVVGAGSAGLTAAKFGADLGARVLLIerrQVLGGDCTWYGCVPSKALIAAGHAAA--ARMGARAEKMLGKRK---DLEQQVVGSDVAKHVDQVRHSVYALETPEILRSEHGVETVFGEAIFT------SKNIVKVNEIKYSYWKLIICTGS 183
                 578*************************99888899*****************9765..455555555444433...23344569999999999999999999999999988888776665433......45788888888888899999997 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00012
                 EEE-------HHHHHHHH----EEEE CS
  PF01134.17   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                  ViG+G  Gce A a+a+lGa+v  +
  MMETSP0890-20130614|5211_1 214 AVIGAGPIGCELAQACAKLGAEVSVL 239
                 7*********************9876 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 5.9
                 EE----------TTT--..-------HHH CS
  PF01134.17 359 flAGqinGteGYeEaaa..qGllAGinaa 385
                 ++AG+      +  ++a  qG +A++na 
  MMETSP0890-20130614|5211_1 349 YAAGDCIANVPQFTHVAgqQGYIAARNAL 377
                 66666555554555555579999999996 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.6   3.3e-12   1.7e-09       1     111 [.      42     156 ..      42     173 .. 0.64
   2 ?    1.2   1.7      0.26   1.3e+02       2      28 ..     213     240 ..     213     246 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 3.3e-12
   PF12831.2   1 DvvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglvatddgnkdee....qvigglareflerlrergaakqe....erkkwvseltfepevakevleeml.aeagvtvllht 111
                 D++VvG+g+aG++AA   a lGa+vlL+err+vlGG  t  + ++     +++    +++g  a+++l + ++    +q+    +  k v+   ++++v++    e+l +e+gv+ ++++
  MMETSP0890-20130614|5211_1  42 DLLVVGAGSAGLTAAKFGADLGARVLLIERRQVLGGDCTWYGCVPSKALIAAGhaaaARMGARAEKMLGKRKD---LEQQvvgsDVAKHVD--QVRHSVYALETPEILrSEHGVETVFGE 156
                 9*************************************98887777776655543322333333333333222...222222221112222..356666666666666555666666665 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.26
   PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakv.lLv 28 
                 ++V+G+gp G+  A a+a+lGa+v +Lv
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVsVLV 240
                 57********************993444 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     2e-11     1e-08       1     197 [.      44     240 ..      44     246 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2e-11
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrlhqpsffssdfgvn...dleklsldsspkwrikaelasgeeisayledvarrl.glk...vrlstrvteveregdrfe....vrvtdgrevrakalvlatgavskpktlglpgsadkeavhle.evlepedlkgkrvvVvGgghsAidallnLldlgqkltwit 197
                 lVvGAG aGl +a    + ga+ +++++r++  Gg  + +y   ++  ps+   + g     ++++ +++   k++  ++   g+++++ +++v      l+   +  s+   e +++++ f+    v+v++ +++++ +l+++tg  skp ++++ + +    + ++ +++e+    g+r +V+G+g  + + +++ ++lg++++++ 
  MMETSP0890-20130614|5211_1  44 LVVGAGSAGLTAAKFGADLGAR-VLLIERRQVLGGDCT-WYG--CV--PSKALIAAGHAaaaRMGARAEKMLGKRKDLEQQVVGSDVAKHVDQVRHSVyALEtpeILRSEHGVETVFGEAIFTskniVKVNE-IKYSYWKLIICTG--SKPLVPDIYK-NVP--YDTNeTIFENPPVSGARLAVIGAGPIGCELAQACAKLGAEVSVLV 240
                 7*********************.*******99999975.773..45..444444444331135555555555577777888888888887777655543443448666666666667766666111155544.59***********..7*****9999.533..333337799999**************************9998875 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.5     1e-09   5.2e-07       1      36 [.      45      80 ..      45      87 .. 0.97
   2 !    7.1   0.6    0.0098       4.9       1      25 [.     215     239 ..     215     241 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1e-09
   PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraa 36
                +vGaG +Gl+aA + a+ g +vl++e+r  lGG+++
  MMETSP0890-20130614|5211_1 45 VVGAGSAGLTAAKFGADLGARVLLIERRQVLGGDCT 80
                8*********************************96 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0098
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvl 25 
                 ++GaG  G+ +A+++ak g +v vl
  MMETSP0890-20130614|5211_1 215 VIGAGPIGCELAQACAKLGAEVSVL 239
                 8******************999886 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   2.6e-09   1.3e-06      14      67 ..      37      91 ..      28     108 .. 0.84
   2 ?    0.9   0.4      0.35   1.8e+02      20      46 ..     213     239 ..     208     244 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.6e-09
                HHTEEEEEEE-------HHHHHHHTSTS-EEEEESSS-----.----------EE CS
  PF01946.12 14 kyaesDvvivGaGssGltaayylakkdlkvailerklsiGGG.awlGGqlfskvv 67
                k+ + D+++vGaGs+Gltaa+  a  + +v+++er+  +GG  +w G    ++++
  MMETSP0890-20130614|5211_1 37 KNFDYDLLVVGAGSAGLTAAKFGADLGARVLLIERRQVLGGDcTWYGCVPSKALI 91
                56789******************************99999952788876655555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.35
                 EEEE-------HHHHHHHTSTS-EEEE CS
  PF01946.12  20 vvivGaGssGltaayylakkdlkvail 46 
                 ++++GaG+ G   a+  ak +  v +l
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVSVL 239
                 6899***************99999886 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   2.1e-06    0.0011       1      36 [.      41      76 ..      41      80 .. 0.93
   2 !    6.3   0.3    0.0051       2.6       3      29 ..     213     239 ..     211     249 .. 0.88
   3 ?    2.1   0.0     0.091        46     134     168 ..     280     316 ..     266     338 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.1e-06
   PF03486.9  1 kdviviGgGaAGlmaAisaakrgakVllldkakklg 36
                +d++v+G+G AGl aA   a+ ga+Vll+++ + lg
  MMETSP0890-20130614|5211_1 41 YDLLVVGAGSAGLTAAKFGADLGARVLLIERRQVLG 76
                5899**************************998776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0051
   PF03486.9   3 viviGgGaAGlmaAisaakrgakVlll 29 
                 ++viG+G+ G   A ++ak ga+V +l
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVSVL 239
                 79**********************998 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.091
   PF03486.9 134 svekeedgafrvktkseeeleadklvlAtGGkSi..P 168
                 + ++ e+++f+++t +++ le d+l++A+G kS+  P
  MMETSP0890-20130614|5211_1 280 KTATYESNIFQLQTFHGSILEFDRLLIAVGRKSVipP 316
                 5556678889****999***************97444 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0077       3.9       3      32 ..      44      73 ..      42     144 .. 0.71
   2 !   17.5   0.0   4.3e-06    0.0022       2      56 ..     213     267 ..     212     292 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0077
                EEE---------HHHHHCT.SEEEEE-S-H CS
  PF02737.13  3 aVvGaGtmGagiAavfaragleVvlvdise 32
                 VvGaG  G   A+  a+ g +V l+++++
  MMETSP0890-20130614|5211_1 44 LVVGAGSAGLTAAKFGADLGARVLLIERRQ 73
                59************************9943 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 4.3e-06
                 EEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH..... CS
  PF02737.13   2 vaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklk 56 
                  aV+GaG +G ++A+++a+ g eV ++  s+  l k ++++++ + ++    ++k
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVSVLVGSRGLLPKERAEAREIITRAFIDDNIK 267
                 69*************************9999999999999999887776555555 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   9.6e-07   0.00048       2      34 ..      41      73 ..      40      75 .. 0.94
   2 !    6.3   0.2    0.0075       3.8       5      42 ..     214     251 ..     211     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9.6e-07
                ECEEE--------HHHHHHHHH.HHEEEEESSS CS
  PF01494.14  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekhs 34
                +d l+VGaG aGl++a++ +  G rv+l+e+++
  MMETSP0890-20130614|5211_1 41 YDLLVVGAGSAGLTAAKFGADLGARVLLIERRQ 73
                6889***************************86 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0075
                 EE--------HHHHHHHHH.HHEEEEESSSCCCH---- CS
  PF01494.14   5 lIVGaGpaGlmlallLseaGvrvvlvekhsttvvlprA 42 
                 +++GaGp G  la+  ++ G +v ++   +   ++ rA
  MMETSP0890-20130614|5211_1 214 AVIGAGPIGCELAQACAKLGAEVSVLVGSRGLLPKERA 251
                 69********************9998777777666666 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   1.2   1.5e-08   7.4e-06       1      40 [.      42      81 ..      42     137 .. 0.90
   2 ?    0.8   1.4      0.31   1.6e+02       3      28 ..     214     239 ..     212     243 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.5e-08
                SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG CS
  PF00890.19  1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggataw 40
                D++V+G+G AGl+AA + a+ g++v+++e  q+ gg  +w
  MMETSP0890-20130614|5211_1 42 DLLVVGAGSAGLTAAKFGADLGARVLLIERRQVLGGDCTW 81
                89*********************************96555 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.31
                 EEE-------HHHHHHHCHTT-EEEE CS
  PF00890.19   3 vViGsGlAGlaAAleaaeaglkvavv 28 
                  ViG+G  G+  A ++a+ g++v v+
  MMETSP0890-20130614|5211_1 214 AVIGAGPIGCELAQACAKLGAEVSVL 239
                 7********************99886 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00017     0.087      22      53 ..      42      73 ..      20      76 .. 0.82
   2 !    9.6   0.0    0.0011      0.57      15     113 ..     205     311 ..     198     326 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
                EEEEE-------HHHHHHHH---EEEE--SST CS
  PF01262.16 22 kvvviGaGvvGlgAievakglgaevvaldkrp 53
                 ++v+GaG +Gl A+++   lga+v  +++r+
  MMETSP0890-20130614|5211_1 42 DLLVVGAGSAGLTAAKFGADLGARVLLIERRQ 73
                579**********************9988875 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0011
                 ---B---EEEEE-------HHHHHHHH---EEEE--SS.....TTHHHHHHH----BSSS.-TTTCTTSB...-B-----HHHHHHHHHHHHHHTT-SEEEE----- CS
  PF01262.16  15 aggvkpakvvviGaGvvGlgAievakglgaevvaldkr.....perleqveslgaefvevdrseeeerke...ydkeeseefiesntellaekiapadlvivtalip 113
                 ++ v+ a++ viGaG  G + ++   +lgaev +l  +     +er+e+ e +   f++ +++  e  k     +k+ ++e    + ++++  i + d +++++  +
  MMETSP0890-20130614|5211_1 205 NPPVSGARLAVIGAGPIGCELAQACAKLGAEVSVLVGSrgllpKERAEAREIITRAFIDDNIKILEPPKGsrsLAKTATYESNIFQLQTFHGSILEFDRLLIAVGRK 311
                 6678889*************************998654111114666666666666666666666555557777777777777777777777777777766666555 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.4   1.9e-06   0.00094       1      39 [.      42      81 ..      42     152 .. 0.85
   2 !    7.8   0.1    0.0024       1.2       2      28 ..     213     239 ..     212     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.9e-06
                EEEEE----HHHHHHHHHHHTT-EEEEEESS.STTSSCGG CS
  PF01266.19  1 dvviiGgGivGlstAyeLarrglkVtllekg.diasgaSg 39
                d++++G+G +Gl++A + a  g++V+l+e++  +++  ++
  MMETSP0890-20130614|5211_1 42 DLLVVGAGSAGLTAAKFGADLGARVLLIERRqVLGGDCTW 81
                89*****************************666665554 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0024
                 EEEE----HHHHHHHHHHHTT-EEEEE CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtll 28 
                 +++iG+G +G+  A  +a+ g++V +l
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVSVL 239
                 69*****************99988775 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0059         3      32      69 ..      36      73 ..      13      83 .. 0.83
   2 !   13.8   0.0   4.1e-05     0.021      29      65 ..     203     239 ..     189     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0059
                -.GGGSEEE-B-------HHHHHHHH---EEEE--SS- CS
  PF02826.14 32 kelsgktvGiiGlGrIGqavakrlkafgmkvlaydrsk 69
                ++  +  + ++G+G+ G ++ak  + +g++vl ++r++
  MMETSP0890-20130614|5211_1 36 RKNFDYDLLVVGAGSAGLTAAKFGADLGARVLLIERRQ 73
                555667899***********************999874 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4.1e-05
                 G-B-.GGGSEEE-B-------HHHHHHHH---EEEE- CS
  PF02826.14  29 llgkelsgktvGiiGlGrIGqavakrlkafgmkvlay 65 
                 +    +sg ++++iG+G IG ++a+ ++++g++v + 
  MMETSP0890-20130614|5211_1 203 FENPPVSGARLAVIGAGPIGCELAQACAKLGAEVSVL 239
                 5556789************************998764 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.2e-05     0.026       1      44 [.      42      81 ..      42      90 .. 0.90
   2 !    7.5   0.3    0.0028       1.4       2      35 ..     213     244 ..     212     251 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.2e-05
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpkllfgnnytW 44
                Dl++vGaG Agl  A     a +g rvlli+ ++ l  g++ tW
  MMETSP0890-20130614|5211_1 42 DLLVVGAGSAGLTAAKFG--ADLGARVLLIERRQVL--GGDCTW 81
                9***********999888..9*********888777..999999 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0028
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagpk 35 
                 l+++GaG+ g+ lA++   ak+g +v ++  +++
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQAC--AKLGAEVSVLVGSRG 244
                 78***************..888888877755555 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0074       3.7       1      32 [.      43      74 ..      43     132 .. 0.78
   2 !    9.8   0.0    0.0016      0.81       1      35 [.     213     247 ..     213     278 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0074
                EEEE-----HHHHHHHHHH---EEEEEES-GG CS
   PF13478.1  1 LlifGaghvaqalaklaaelgfrvtvvddree 32
                Ll++Gag  +   ak+ a+lg rv ++++r+ 
  MMETSP0890-20130614|5211_1 43 LLVVGAGSAGLTAAKFGADLGARVLLIERRQV 74
                79**************************9953 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0016
                 EEEE-----HHHHHHHHHH---EEEEEES-GGG-T CS
   PF13478.1   1 LlifGaghvaqalaklaaelgfrvtvvddreerfp 35 
                 L+++Gag+++ +la+  a+lg +v+v+   +  +p
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVSVLVGSRGLLP 247
                 789**********************9877765554 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.025        13       4      32 ..      45      73 ..      43     135 .. 0.87
   2 !   10.3   0.0   0.00073      0.37       2      32 ..     213     243 ..     212     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.025
                EE-------HHHHHHHTTEEEEEEE-S-H CS
  PF01210.18  4 vlGaGswGtalAkvlaenghevrlWvree 32
                v+GaGs G + Ak  a+ g +v l  r++
  MMETSP0890-20130614|5211_1 45 VVGAGSAGLTAAKFGADLGARVLLIERRQ 73
                89********************9999986 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00073
                 EEEE-------HHHHHHHTTEEEEEEE-S-H CS
  PF01210.18   2 vavlGaGswGtalAkvlaenghevrlWvree 32 
                  av+GaG +G  lA+ +a+ g ev++ v ++
  MMETSP0890-20130614|5211_1 213 LAVIGAGPIGCELAQACAKLGAEVSVLVGSR 243
                 69*******************9999876555 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   1.6e+03       3      22 ..      41      60 ..      40      74 .. 0.69
   2 !   14.1   0.0   2.9e-05     0.015     142     250 ..     168     267 ..     137     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.2
   PF13434.1  3 lDligiGiGpfnLsLaalle 22
                +Dl+ +G+G + L+ a   +
  MMETSP0890-20130614|5211_1 41 YDLLVVGAGSAGLTAAKFGA 60
                89999999999998765544 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.9e-05
   PF13434.1 142 eeeellarnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqkaaelkwvtrspafeplddskfvneifsPeyvdyfya 250
                 +e +++  +l++ tG++p +P+++k++      + ++e + ++    ++ r av+G+G  + e+++ +++  +  e+++++ s+++ p + ++   ei++ +++d  ++
  MMETSP0890-20130614|5211_1 168 NEIKYSYWKLIICTGSKPLVPDIYKNVP-----YDTNETIFEN-PPVSGARLAVIGAGPIGCELAQACAKLGA--EVSVLVGSRGLLPKERAEA-REIITRAFIDDNIK 267
                 566777789****************986.....3445555544.3899********************99887..7888888889999999887.77777777766554 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.048        24      10      39 ..      43      72 ..      39     147 .. 0.83
   2 !    8.9   0.0     0.003       1.5       6      47 ..     209     254 ..     207     312 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.048
                EEEE-------HHHHHHTT---EEEEE-SS CS
   PF13241.1 10 vlvvGgGevAarkvrklleagakvtvvspe 39
                 lvvG+G+ +++ ++  ++ ga+v ++  +
  MMETSP0890-20130614|5211_1 43 LLVVGAGSAGLTAAKFGADLGARVLLIERR 72
                79**********************999876 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.003
                 TT-EEEEE-------HHHHHHTT---EEEEE-SS-....-TT-T.. CS
   PF13241.1   6 kgkkvlvvGgGevAarkvrklleagakvtvvspei....keleelv 47 
                 +g +  v+G+G+++ + +++ ++ ga+v v+  +     ke  e  
  MMETSP0890-20130614|5211_1 209 SGARLAVIGAGPIGCELAQACAKLGAEVSVLVGSRgllpKERAEAR 254
                 688999**********************998766544442333333 PP

>> PF00208.16  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.3   6.7e+02      35      60 ..      43      68 ..      34      72 .. 0.88
   2 !   13.0   0.0   9.6e-05     0.049      29      80 ..     207     258 ..     194     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.3
                EEEE----HHHHHHHHHHHT--EEEE CS
  PF00208.16 35 vaiqGsGnvgsyaaelltelgakvva 60
                  + G G  g  aa++  +lga+v+ 
  MMETSP0890-20130614|5211_1 43 LLVVGAGSAGLTAAKFGADLGARVLL 68
                5789******************9976 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 9.6e-05
                 -CCC-EEEEE----HHHHHHHHHHHT--EEEEE------EE-S-HHHHHHHH CS
  PF00208.16  29 slegkrvaiqGsGnvgsyaaelltelgakvvavsDssGviydpngldleell 80 
                  ++g+r a+ G G +g  +a+ + +lga+v +++ s+G + ++     e ++
  MMETSP0890-20130614|5211_1 207 PVSGARLAVIGAGPIGCELAQACAKLGAEVSVLVGSRGLLPKERAEAREIIT 258
                 5899**********************************99887766555555 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00014     0.071       1      35 [.     212     244 ..     212     271 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00014
  PF03807.12   1 kigiiGaGnigealakglaaagaqkheviiaasrs 35 
                 ++++iGaG ig  la+ +a+ g ++ +v+++ sr+
  MMETSP0890-20130614|5211_1 212 RLAVIGAGPIGCELAQACAKLG-AEVSVLVG-SRG 244
                 689*******************.55555645.776 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.7   1.4e+03       5      31 ..      43      69 ..      41      73 .. 0.87
   2 ?   10.5   0.0   0.00088      0.44       4      31 ..     212     239 ..     209     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.7
  PF00289.17  5 vlianrGeiavriiralrelgietvav 31
                +l++++G +++ +++   +lg ++ ++
  MMETSP0890-20130614|5211_1 43 LLVVGAGSAGLTAAKFGADLGARVLLI 69
                79*********9999999999999887 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00088
  PF00289.17   4 kvlianrGeiavriiralrelgietvav 31 
                 ++ ++++G+i++ +++a+ +lg e+ ++
  MMETSP0890-20130614|5211_1 212 RLAVIGAGPIGCELAQACAKLGAEVSVL 239
                 789********************98765 PP

>> PF04127.10  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.2   1.6e+03      29      51 ..      49      71 ..      47      78 .. 0.87
   2 ?    9.7   0.0    0.0011      0.53      29      56 ..     219     246 ..     214     266 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 3.2
  PF04127.10 29 GkmGvalAeaaaerGaeVtlvsg 51
                G  G++ A+  a++Ga+V l++ 
  MMETSP0890-20130614|5211_1 49 GSAGLTAAKFGADLGARVLLIER 71
                8899999*************975 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0011
  PF04127.10  29 GkmGvalAeaaaerGaeVtlvsgpvele 56 
                 G  G++lA+a+a++GaeV +  g+  l 
  MMETSP0890-20130614|5211_1 219 GPIGCELAQACAKLGAEVSVLVGSRGLL 246
                 889*****************99986433 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4      0.19        98       2      31 ..      44      73 ..      43      81 .. 0.83
   2 ?    6.3   0.0      0.01       5.3       2      33 ..     214     246 ..     213     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.19
                EEE-----------HHHHHHH-EEEE---- CS
  PF02558.11  2 ailGaGaiGsllaakLakagadvtlilrsr 31
                +++GaG+ G + a   a  ga v li r++
  MMETSP0890-20130614|5211_1 44 LVVGAGSAGLTAAKFGADLGARVLLIERRQ 73
                79*****997755555559*******9997 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.01
                 EEE-----------HHHHHHH-EEEE----.HH CS
  PF02558.11   2 ailGaGaiGsllaakLakagadvtlilrsr.rl 33 
                 a++GaG iG+ la   ak ga+v +++ sr  l
  MMETSP0890-20130614|5211_1 214 AVIGAGPIGCELAQACAKLGAEVSVLVGSRgLL 246
                 89*********************9999888555 PP

>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.51   2.6e+02       5      27 ..      43      65 ..      40      70 .. 0.81
   2 ?   10.3   0.7   0.00081      0.41       3      26 ..     211     234 ..     209     240 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.51
  PF00899.16  5 vlvvGaGglGseaaeaLaraGvg 27
                 lvvGaG  G +aa+  a +G +
  MMETSP0890-20130614|5211_1 43 LLVVGAGSAGLTAAKFGADLGAR 65
                69***********9977776665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00081
  PF00899.16   3 skvlvvGaGglGseaaeaLaraGv 26 
                 ++ +v+GaG +G+e+a+a a++G 
  MMETSP0890-20130614|5211_1 211 ARLAVIGAGPIGCELAQACAKLGA 234
                 7899****************9996 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.58   2.9e+02       4      35 ..      44      77 ..      43     154 .. 0.68
   2 ?   10.0   0.1    0.0011      0.55       8      41 ..     217     254 ..     213     263 .. 0.79
   3 ?   -1.8   0.0       4.5   2.3e+03     100     143 ..     490     533 ..     482     546 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.58
                EE---------HHHHHHHHHSSEEEEEEESS.... CS
  PF00106.20  4 liTGGlgglGlalArwLveegarhlvlvsrr...e 35
                l++G +g  Gl  A+  ++ gar+l++  r+    
  MMETSP0890-20130614|5211_1 44 LVVG-AGSAGLTAAKFGADLGARVLLIERRQvlgG 77
                5555.788899999999999776655555545551 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0011
                 -------HHHHHHHHHSSEEEEEEESS.....SHHHHH CS
  PF00106.20   8 GlgglGlalArwLveegarhlvlvsrr....edapgaa 41 
                 G+g +G +lA+ +++ ga++ vlv+ r    ++ ++a+
  MMETSP0890-20130614|5211_1 217 GAGPIGCELAQACAKLGAEVSVLVGSRgllpKERAEAR 254
                 699**********************9977543333333 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 4.5
                 .HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHHHSST CS
  PF00106.20 100 tperlervlapkvtgawllheltldadlgafvlfSSvagvlgsp 143
                 +  ++++ l+p  t a++l   ++d    +f  fS  +  + + 
  MMETSP0890-20130614|5211_1 490 STLQVAKSLHPYPTHAFVLQVMCADDAYRRFFHFSFFGKRFRAK 533
                 55578899999999999999999998888888888666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:01.78
# Mc/sec: 755.26
//
Query:       MMETSP0890-20130614|5224_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   15.2   1.8     0.0097   15.2   1.3    2.2  2  PF00038.16 Intermediate filament protein
  ------ inclusion threshold ------
        9.6    6.3  28.5        1.4    9.0   2.8    2.2  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.3   1.4e-06    0.0097     194     250 ..     114     170 ..     100     189 .. 0.87
   2 ?   -7.7  15.9         2   1.4e+04     197     280 ..     304     380 ..     294     388 .. 0.39

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.4e-06
  PF00038.16 194 kakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaele 250
                 k+ le+++++ ++++  +++ k+  t l  ++++ ++el++l+k++++l +q++el 
  MMETSP0890-20130614|5224_1 114 KRELEHARDKRNEHETVMKALKQKTTTLTLKLDQEQAELAKLRKENAKLREQIKELG 170
                 677899999999999999999999999999999999999999999999999999986 PP

  == domain 2    score: -7.7 bits;  conditional E-value: 2
  PF00038.16 197 leelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkeemar 280
                 +  ++++ ++  ++ +s++++ +  r+q q+  i+ +s ++q+ +  +q + ++++        q++ ++ +++lq+++++m +
  MMETSP0890-20130614|5224_1 304 SMAARQQQQQPIQQQQSSQQQSMASRQQ-QQQPIQQQSSQQQSMAARQQPQPIQQQQ------QQQNNAQQQQQLQQTQQQMRH 380
                 3333444444444444444444443333.2233333333333333333333333333......333333333333333333322 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.8   0.00021       1.4     137     202 .]      73     167 ..      42     168 .. 0.64
   2 ?    2.9  11.5     0.015     1e+02     131     200 ..     294     377 ..     220     379 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00021
   PF13476.1 137 aylgqer...................ekekfkl..kekkkrleelekeleeledekellek............llqeeekekeleeleeeleelleele 202
                 ++++++                    e  +  +  ++ ++ le+l++ele + d++++ e              l++ ++++el +l++e ++l e+++
  MMETSP0890-20130614|5224_1  73 ILQEEGAppaptsrtgqrvgpgtpreE--Q--RpfSKAFQILESLKRELEHARDKRNEHETvmkalkqktttlTLKLDQEQAELAKLRKENAKLREQIK 167
                 444444466666666666666655331..2..2336667777777777777777777655555555546665438999999999999999999999986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.015
   PF13476.1 131 e.......ilpliaylgqerekekfklkekkkrleelekeleeledekellek.......l.lqeeekekeleeleeeleellee 200
                 +       + +  a ++q++   +++++++++ +++ +++++ ++++ + +++       + +q+++++++  + +++l++ +++
  MMETSP0890-20130614|5224_1 294 QqppppaqQQSMAARQQQQQ-PIQQQQSSQQQSMASRQQQQQPIQQQSSQQQSmaarqqpQpIQQQQQQQNNAQQQQQLQQTQQQ 377
                 13444442222223333333.2223334444444444444444444444444454454342667777777777778888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3206  (0.234494); expected 273.4 (0.02)
Passed bias filter:                      698  (0.0510532); expected 273.4 (0.02)
Passed Vit filter:                       277  (0.0202604); expected 13.7 (0.001)
Passed Fwd filter:                        74  (0.00541252); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.02u 0.48s 00:00:03.50 Elapsed: 00:00:01.76
# Mc/sec: 705.29
//
Query:       MMETSP0890-20130614|5228_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.083   12.5   0.0       0.15   11.7   0.0    1.4  1  PF13456.1  Reverse transcriptase-like
      0.092   12.5   0.1          1    9.2   0.0    2.4  2  PF01371.14 Trp repressor protein


Domain annotation for each model (and alignments):
>> PF13456.1  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05      0.15      36      78 ..     114     156 ..     110     159 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.3e-05
   PF13456.1  36 qqvqgedeekselaallaeirsllkkfesvsvshvpReqNrvA 78 
                 +q+ ++++ +sel +l++ i s       +s+ h+ R+ N+v+
  MMETSP0890-20130614|5228_1 114 EQLDNSSPLTSELVQLISGITSRCVTVARFSIAHIVRDFNQVV 156
                 68888999999******************************97 PP

>> PF01371.14  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00015         1      57      78 ..      52      73 ..      44      81 .. 0.84
   2 ?    0.5   0.0     0.075   5.1e+02      61      84 ..      85     108 ..      74     117 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00015
  PF01371.14 57 eelgvSiAtItRgsnsLktgsd 78
                 e+ +S+At +Rgsn+L++ + 
  MMETSP0890-20130614|5228_1 52 REYPTSTATNGRGSNTLHSTPG 73
                57899************98765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.075
  PF01371.14  61 vSiAtItRgsnsLktgsdeykavL 84 
                   i tI+R   +L++ +d+ +  L
  MMETSP0890-20130614|5228_1  85 KEIPTIGRAILALQKYDDDADIHL 108
                 568899999999998888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.57
# Mc/sec: 665.20
//
Query:       MMETSP0890-20130614|5230_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 268.68
//
Query:       MMETSP0890-20130614|5232_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0035   16.4   0.0     0.0035   16.4   0.0    1.0  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.6e-07    0.0035      93     131 ..      13      52 ..       1      57 [. 0.81

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.6e-07
                 CCB-HHHHHHHHHHHHHHHHHHHH.TCEE-S--SGGGEEE CS
  PF00069.20  93 gklseeeikkialqilegleylHs.ngiiHrDLKpeNiLl 131
                   l+++++k +a++i++gl+y+H+  ++++ D  p+ +L+
  MMETSP0890-20130614|5232_1  13 SLLTTDQAKIVAYKIAKGLAYMHDtCNLCFWDFTPSKVLV 52 
                 46799******************96699999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.50s 00:00:00.73 Elapsed: 00:00:00.90
# Mc/sec: 157.09
//
Query:       MMETSP0890-20130614|5229_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-14   51.7   9.7    5.9e-14   51.3   6.7    1.1  1  PF13520.1  Amino acid permease
    2.7e-07   29.2   5.0    2.7e-07   29.2   3.4    1.5  2  PF00324.16 Amino acid permease


Domain annotation for each model (and alignments):
>> PF13520.1  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   6.7   8.6e-18   5.9e-14     210     409 ..      17     231 ..       2     255 .. 0.69

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 8.6e-18
   PF13520.1 210 vseevkk..rdvpkaifigllivlvlyllvaiaflgvlpddei.......alssgllsvaalffeavggk.vvaiivvillalsllgaintlvigssrvlealardgvlPkflakvnkfgspiraiiltaivslillllfllassaaynfll.nlssvgliivyllliigalilrkknkdlkr................ipgk....ipvaiiailfllflvvalffppkn 409
                 +   +k+  r +p+a +++ + ++++y+ v ia+l++lp+d+        +  +   +v+alf+e+v ++  +a+++++l+al+++g+ ++l++g + +  a+a+dg + +++ak + +    r++ ++  +s +l+    ++   ++ +l+ ++++  l+  +++ ++g++++++ + +  +                ++++    ++  i+ il++ f+++     ++n
  MMETSP0890-20130614|5229_1  17 IGDTFKNpkRIIPLACILSAATIGLVYFAVYIAVLAALPWDGNngfvarcSRRD-QCYVGALFAEKVTSSnLFARVFALLVALTIFGSSFALLVGYATIPAAAAKDGLFFSWFAKDDGT----RSLYFIGALSAALC----FI---DLEILIeAVATTRLLAQFAAQAFGLWLIKYNETNNTTidqgipslkknhqnnqHFWRipahPLPEIFVILGFSFVFI----TSPN 231
                 44554544167*****************************99977776654333.3558*********988**********************************************65....55555555553322....22...34444404555555555555588888888887766445556666666888888777734444444444444444443....3333 PP

>> PF00324.16  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   3.4   3.9e-11   2.7e-07     210     378 ..       5     174 ..       1     184 [. 0.81
   2 ?   -2.3   0.0      0.13   9.1e+02      23      45 ..     235     257 ..     191     263 .. 0.62

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.9e-11
  PF00324.16 210 ffaftGielvaiiagEvknPekaiPkailqaviritifYvlsllaigllvprndlglladsasa....aspfvifqkssgisvlaplinaviltaalsaansslysasRvlyalakdglaPkkflkkvsksgvPlraillsmiisllalllaslnlaivfnfllaisalinli 378
                 +   tG+  +  i++  knP++ iP a ++   +i+++Y  + +a+ + +p++ ++ + +  s     + +  ++ k + ++ +a ++++++ +++++++ ++l+ ++ +  a akdgl+  ++++k +  ++ +  i + +++ +++ l + l  a++++ lla  a+ ++ 
  MMETSP0890-20130614|5229_1   5 IYDMTGYFDINFIGDTFKNPKRIIPLACILSAATIGLVYFAVYIAVLAALPWDGNNGFVARCSRrdqcYVGALFAEKVTSSNLFARVFALLVALTIFGSSFALLVGYATIPAAAAKDGLFF-SWFAKDDGTRSLYF-IGALSAALCFIDL-EILIEAVATTRLLAQFAAQAFG 174
                 55678888888899999************************************999999888889***999999***********************************************.88888777665333.3333333344442.4444445555555555555555 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.13
  PF00324.16  23 lsqagplgallayllagvviflv 45 
                  +q+++l+  +++ll+g+v+f v
  MMETSP0890-20130614|5229_1 235 HRQVPLLESGILVLLSGLVVFSV 257
                 34444555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.46s 00:00:01.00 Elapsed: 00:00:00.97
# Mc/sec: 713.97
//
Query:       MMETSP0890-20130614|5238_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   17.7   0.1     0.0078   16.0   0.0    2.0  2  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
        0.6    9.9   5.2        2.6    7.9   0.0    3.6  4  PF13374.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.56   3.8e+03       7      17 ..      31      41 ..      29      45 .. 0.65
   2 !   16.0   0.0   1.1e-06    0.0078      10      57 ..     104     152 ..      95     154 .] 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.56
   PF13424.1  7 ilnnlalvlrr 17
                +l+n+al+l++
  MMETSP0890-20130614|5238_1 31 VLYNYALSLFE 41
                56677776665 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.1e-06
   PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlyl 57 
                  l ++l  ++++ eA ++++ +l+  +r+lg+ h  t ++l  +a++++
  MMETSP0890-20130614|5238_1 104 LLCNILTFQRKFAEANQILNPCLQKaQRVLGPSHVATKNLLGIYARICQ 152
                 5889999******************************9***99999997 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         2   1.4e+04      13      20 ..       6      13 ..       6      15 .. 0.75
   2 ?    0.5   0.1      0.08   5.5e+02      18      27 ..      61      70 ..      59      76 .. 0.85
   3 ?    1.1   0.2     0.054   3.7e+02      17      27 ..      76      86 ..      73      90 .. 0.89
   4 ?    7.9   0.0   0.00038       2.6      11      40 ..     108     137 ..     107     139 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2
   PF13374.1 13 rargryee 20
                ++r++ye+
  MMETSP0890-20130614|5238_1  6 FNRRNYEK 13
                57899987 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.08
   PF13374.1 18 yeeAlaleee 27
                +eeA++l++e
  MMETSP0890-20130614|5238_1 61 LEEAERLMRE 70
                69*****997 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.054
   PF13374.1 17 ryeeAlaleee 27
                r eeA++l++e
  MMETSP0890-20130614|5238_1 76 RDEEAERLMRE 86
                789*****997 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00038
   PF13374.1  11 alrargryeeAlaleeealairrrllGddH 40 
                 +l  +++++eA +++  +l   +r+lG+ H
  MMETSP0890-20130614|5238_1 108 ILTFQRKFAEANQILNPCLQKAQRVLGPSH 137
                 567799**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 576.62
//
Query:       MMETSP0890-20130614|5243_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1771  (0.129535); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.89
# Mc/sec: 1319.34
//
Query:       MMETSP0890-20130614|5245_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-13   48.7   0.0    6.2e-08   32.1   0.0    2.5  2  PF10539.4 Development and cell death domain


Domain annotation for each model (and alignments):
>> PF10539.4  Development and cell death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-06     0.024      49     115 ..       1      62 [.       1      71 [. 0.81
   2 !   32.1   0.0   4.5e-12   6.2e-08       2      86 ..      92     171 ..      91     179 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.8e-06
   PF10539.4  49 kkLhGifeaaskGklnieskaflsegkgetkypaqvrfkvrve.CkPLaeskfkkvilenykdkkkfr 115
                 k L+G f+   + +lni+++af +      +y aqvrf+ +    + ++ +++k+v++  +++ ++f 
  MMETSP0890-20130614|5245_1   1 KILYGSFRKDGECSLNIDPNAFGG------RYKAQVRFRSFDAiATQIKPTSLKSVLAGPFENVQQFV 62 
                 679********************9......9*******988651456777888888888888877775 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 4.5e-12
   PF10539.4   2 ggviFvcnnktikecfkkqlf.GlparridyvkkikpglpLFLfnydkkkLhGifeaaskGklnieskaflsegkgetkypaqvrf 86 
                 ++++  c+    +e +k+++f G+++r  +y ++i p+++LFL+n+ +kk  Gif+ ++  +l+i+++   +      ++paq+ +
  MMETSP0890-20130614|5245_1  92 DAYVLACTDGHESEILKHRIFiGMKSRLETYQNNIGPNTKLFLYNTISKKCQGIFKMSAPPGLHINPECLNG------RFPAQLPV 171
                 57999************99977*********************************************99887......89999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2519  (0.184245); expected 273.4 (0.02)
Passed bias filter:                      662  (0.0484201); expected 273.4 (0.02)
Passed Vit filter:                       350  (0.0255998); expected 13.7 (0.001)
Passed Fwd filter:                       171  (0.0125073); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 4.61u 0.47s 00:00:05.08 Elapsed: 00:00:02.34
# Mc/sec: 480.30
//
Query:       MMETSP0890-20130614|5242_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2688  (0.196606); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.95u 0.39s 00:00:02.34 Elapsed: 00:00:02.37
# Mc/sec: 546.01
//
Query:       MMETSP0890-20130614|5250_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-05   23.4   0.3     0.0067   16.6   0.1    2.3  2  PF03067.10 Chitin binding domain


Domain annotation for each model (and alignments):
>> PF03067.10  Chitin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.9e-07    0.0067      69     121 ..     151     197 ..     113     244 .. 0.62
   2 !    4.8   0.0     0.002        27     149     180 ..     282     313 ..     264     316 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.9e-07
  PF03067.10  69 deaksdrWrktqikagasiefkwkitapHetsyfevyiTkpgwdpsqpeltws 121
                 d+a +++W    i ag+s+e+kw i+a+H  + +++ ++k+  ++s+   t++
  MMETSP0890-20130614|5250_1 151 DQAMVRTW----I-AGSSVEVKWSIQANH-GGGYQYRLCKKPNSASTFWQTEE 197
                 33333344....4.5667***********.888******75444444322333 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.002
  PF03067.10 149 tvtlPed.rsgkhvllvvWqradtagEaFynCa 180
                 ++ +P   + g+  l ++W++++t +    +Ca
  MMETSP0890-20130614|5250_1 282 QLHIPMSlERGRYALSWRWDAEQTPQ-VWLSCA 313
                 5678888899****************.999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:01.01
# Mc/sec: 851.77
//
Query:       MMETSP0890-20130614|5252_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-42  144.6   0.0    3.9e-42  144.1   0.0    1.2  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.0   2.8e-46   3.9e-42       8     204 ..       6     212 ..       3     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 144.1 bits;  conditional E-value: 2.8e-46
                 HHHHHHHHHHHHH-----BHHHHHHHHHHHHHHTT....TTCGCS-SCCEEEECCCCE----...-S-B-----EEEEEEEEEETTEEEEEEEEEE--.GHH-HHHHHHHHHHHHHHHHHH---.--BHHHHHHHHHHHHHT..-E.E--S-------...-SS-S--.-.SSTT---B-----EEEE------TTTS-EEE-BEEEE-- CS
  PF00557.19   8 riaaaaleavlreikpgvterelaalieaalkreg....akgqafppivasgenaallhytp...ndrvlkdgdlvlldvgaeydgyasditrTvvvg.ftpeqrelyeavleaqeaaiaavkp.GvtlseihaaaekvleegGlseffphglGHgvg..levhdeps.v.srkgrgrkleegmvftiePgiyfapgeggvriedtvlvt 204
                 +++ +a+ ++ ++i++g t+++ + + e+ +k+++    + +++fp+i+++g n+a++hy+    + +++++  l+l+d+g++y   ++d+trT+++g +t+e+++++++vl++  a+ +av+p  +++++i+a a+++l+++Gl  ++ hg+GHgvg  l+vh+ p+ + +r  + ++l +gm++++ePg+y  p+++g+rie+ +lv 
  MMETSP0890-20130614|5252_1   6 AAVVRAFATINQRIQEGDTTLDECSVDEELCKARKrdplFFEPSFPTIAGFGGNGAIVHYVAkpeSCARVDASNLLLVDSGGQYLDGTTDVTRTFHFGqPTAEEKDAFTRVLKGNIALDSAVFPsTTPGCAIDAFARQHLWAAGL--DYGHGTGHGVGaaLNVHEGPQsIsPRFSNLQPLLPGMIVSNEPGFY-LPNRFGIRIENLLLVE 212
                 455666777766799**997766666665554444457899*******************662333555999**************************99999************77778****7777*************99**..79**********99*****995423334789***************.88999*******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.82
# Mc/sec: 914.71
//
Query:       MMETSP0890-20130614|5254_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       847  (0.0619514); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:00.65
# Mc/sec: 2337.37
//
Query:       MMETSP0890-20130614|5258_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.4   0.3      0.071   13.2   0.2    1.6  1  PF12948.2 MSP7-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> PF12948.2  MSP7-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.2e-06     0.071      52     121 ..      64     146 ..      56     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.2e-06
   PF12948.2  52 kLidaffkknkkekenkksiv...eifkkaLedekfreeFknfiyglYnfakkknyls..........edkkeneeeykqlfe 121
                 +Li + ++k+++++    ++    + + k +++ kf + F+ f+  lY+   ++n  +          ++++ +e+e + +fe
  MMETSP0890-20130614|5258_1  64 NLILTNVMKKDQDDAVDAEVWaegNGLRKRMTNRKFGTSFTVFLEPLYSGYTTNNNSKveddslvnitTQQQSKEKEERMFFE 146
                 677777777777775666665677889*********************98888887777888888887555555555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.62
# Mc/sec: 1016.52
//
Query:       MMETSP0890-20130614|5256_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.64    9.9   7.5        1.6    8.6   5.2    1.7  1  PF11214.3 Mediator complex subunit 2


Domain annotation for each model (and alignments):
>> PF11214.3  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.2   0.00012       1.6      27     103 ..     145     232 ..     131     236 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00012
   PF11214.3  27 eqlkniqldsklitgfnnqlqksLkekikkFhsiLDdlevklndaksyvdtlvelkkkqe.............ekklkeEeEkkkkeeee 103
                   +++iq++++ + + +++ q  L+e++++ +  L d  ++l+++   vd+ ve +k ++                +++EeE++  e+ee
  MMETSP0890-20130614|5256_1 145 RLIDTIQQENDTLRAQSAAAQAALAERLRNQERALEDDCIRLENSLVLVDHDVEEEKFNDlsnievlesisvtT--EQNEEEAEEEEDEE 232
                 6799**************************************************9999889*******998542..44555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1470  (0.107519); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1307.10
//
Query:       MMETSP0890-20130614|5261_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   20.4   0.1    0.00058   19.5   0.0    1.4  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.3e-08   0.00058     172     198 .]     473     499 ..     465     499 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.3e-08
   PF04755.7 172 kgwLeitYlDedLRIsRGdeGslfvla 198
                  g ++i Y Ded R++RG++++lfvl+
  MMETSP0890-20130614|5261_1 473 LGYMDILYADEDFRVTRGNRNTLFVLK 499
                 5889*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.71
# Mc/sec: 1761.83
//
Query:       MMETSP0890-20130614|5263_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 760.22
//
Query:       MMETSP0890-20130614|5260_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 881.37
//
Query:       MMETSP0890-20130614|5267_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.9   0.2      0.026   14.6   0.2    1.7  1  PF09026.5 Centromere protein B dimerisation domain
      0.056   12.7   0.1       0.21   10.8   0.0    1.9  2  PF05473.7 UL45 protein


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   3.8e-06     0.026      20      78 ..      48     109 ..      33     127 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.8e-06
   PF09026.5  20 eedeeedeededeedeee.ddevpvpsfgeamayfa....mvkryltsspiddrvqshilhleh 78 
                  +d+eed  dede+dee+ +    v    + ma+f+    +vk   +++p+   +   il leh
  MMETSP0890-20130614|5267_1  48 FDDDEEDIYDEDEDDEEQpGSRAWVVKSLQKMAWFTtrmtVVKPLASAAPVARLI--AILFLEH 109
                 589999999****999983456667777788999963321345544555554333..4677776 PP

>> PF05473.7  UL45 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.3     2e+03     140     176 ..     143     179 ..     124     189 .. 0.68
   2 ?   10.8   0.0     3e-05      0.21      18      66 ..     325     379 ..     309     385 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.3
   PF05473.7 140 tsassseqkvnddslascltpkesvalvedcsetalv 176
                 ++ +ss       +l +c+ + e+++lv ++se a+ 
  MMETSP0890-20130614|5267_1 143 GQRASSAMEQFTRQLIDCVSSAEGETLVYESSEAAVK 179
                 4444444445556778899899988888888877765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3e-05
   PF05473.7  18 rfevrailedepsvlsstsssrtkrkspaaa......lllilggialGvlltvfv 66 
                  +  r i+++++  +++  ++ +k++s++           +lg+i++G++ ++f+
  MMETSP0890-20130614|5267_1 325 HIRNRSIQQNKNHKTKKSAKRIAKKESRHSIlftlcaYACLLGWIFFGIIGFIFI 379
                 5667788888888888888888999999998555444445677888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       827  (0.0604886); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.69
# Mc/sec: 1621.88
//
Query:       MMETSP0890-20130614|5266_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   16.5   2.6       0.01   15.5   1.8    1.6  1  PF08700.6  Vps51/Vps67
     0.0059   15.8   0.7     0.0086   15.3   0.5    1.2  1  PF00809.17 Pterin binding enzyme
  ------ inclusion threshold ------
      0.045   12.7   0.5          5    5.9   0.1    2.1  2  PF00764.14 Arginosuccinate synthase
        0.1   12.0   0.0       0.17   11.3   0.0    1.3  1  PF10401.4  Interferon-regulatory factor 3
       0.15   11.8   9.5       0.27   11.0   6.1    1.8  1  PF13863.1  Domain of unknown function (DUF4200)
        0.4   10.3   5.0       0.29   10.8   0.1    2.3  2  PF13543.1  SAM like domain present in kinase suppressor RAS 1
        7.9    5.9  11.5        4.4    6.7   6.0    1.8  2  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF08700.6  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.8   5.1e-06      0.01      10      83 ..      61     134 ..      49     143 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.1e-06
   PF08700.6  10 ayvrellakstlkellkveaklrseiraldselkalVydnYskLisasdtIrkmksemekldpklselkqaiek 83 
                 ++v++  +k+ ++  ++ +   ++e +++ ++ k+++ d  s+Lisa ++I++ k++ ++l+++   l++++++
  MMETSP0890-20130614|5266_1  61 ELVKNWNSKAIIAFTRAQHDLTQAELKNKLNSYKTVIADQMSELISAKKEIAEAKKKEKELEDNFIRLHNELQH 134
                 55555555666677778888889******************************************999998875 PP

>> PF00809.17  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   4.4e-06    0.0086      86     152 ..      38     103 ..      34     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.4e-06
                 HHHHHCSS-EEEEEEBS-HHHHHHHHHHH---EEEEE---...-----SHHHHHHHHHHHHHHHHHC CS
  PF00809.17  86 eaAlkagadiindvsglendeemaklaaeygaavVlmhmdgkpktmqeeleyevdvveellealeer 152
                 +aA+k  ad++ d + ++ +e++++l+++ + + ++ +++ + +  q el+ +++  + ++++  ++
  MMETSP0890-20130614|5266_1  38 RAAVKQEADCLEDLATAS-FENIHELVKNWNSKAIIAFTRAQHDLTQAELKNKLNSYKTVIADQMSE 103
                 79**************98.*********************888777777665555555444443333 PP

>> PF00764.14  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0029       5.6     172     204 ..      35      67 ..      26      70 .. 0.90
   2 ?    5.9   0.1    0.0025         5     268     306 ..      67     105 ..      64     109 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0029
  PF00764.14 172 DenllgrsieagiLedpkteppediyeltkdpa 204
                 D+n +    ea+ Led+ t++ e+i+el+k+ +
  MMETSP0890-20130614|5266_1  35 DKNRAAVKQEADCLEDLATASFENIHELVKNWN 67 
                 9999***********************999865 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0025
  PF00764.14 268 eapaalvLikahkdleeltlerevlkfkeiveekyaelv 306
                 +  a ++ ++a++dl +  l+ +++ +k+++ ++++el+
  MMETSP0890-20130614|5266_1  67 NSKAIIAFTRAQHDLTQAELKNKLNSYKTVIADQMSELI 105
                 567888999****************************98 PP

>> PF10401.4  Interferon-regulatory factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.6e-05      0.17       2      40 ..     137     177 ..     136     191 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.6e-05
                 EEEEEEEEE---EEEEEEEEE-..---EEE------TT-.. CS
   PF10401.4   2 tqlevsvfYrgrlvleqtvssp..eGvrlvyrpslqqghlc 40 
                 ++l+++++Y++ +v+e +v+++  +G++l+++++l++++++
  MMETSP0890-20130614|5266_1 137 HALRIQLKYFQDQVGELVVKNNqtQGMHLSSKKRLRESSVD 177
                 579****************9873369999998888887765 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.1   0.00014      0.27      35      92 ..      77     134 ..      67     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00014
   PF13863.1  35 eelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqlee 92 
                 ++ +  q+el+ +l+ ++  + d   +   a+k+++e+kk+ ke+e    +l+++l++
  MMETSP0890-20130614|5266_1  77 AQHDLTQAELKNKLNSYKTVIADQMSELISAKKEIAEAKKKEKELEDNFIRLHNELQH 134
                 5667789***************************************999888877654 PP

>> PF13543.1  SAM like domain present in kinase suppressor RAS 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015      0.29      51     114 ..       3      69 ..       1      82 [. 0.86
   2 ?    1.6   0.5       0.1     2e+02      26      61 ..      79     119 ..      72     144 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
   PF13543.1  51 ksrlaereraaeLqey...pkleqwLrvvglsqetieailkklltleqlLemsdeelkeilekvgae 114
                 +s+l+e+++a++ +e      l +wL+ + +s++   a+ ++   le+l + s e+++e++++++++
  MMETSP0890-20130614|5266_1   3 RSNLEESDEANGWDEEkelADLDKWLNNLPISDKNRAAVKQEADCLEDLATASFENIHELVKNWNSK 69 
                 578899999999988866678899**************************************99854 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.1
   PF13543.1  26 seltqqeira.lEa.Klv..kyisqqllaksrlaerer.aa 61 
                 ++ltq e+++ l + K+v    +s++++ak+++ae ++  +
  MMETSP0890-20130614|5266_1  79 HDLTQAELKNkLNSyKTViaDQMSELISAKKEIAEAKKkEK 119
                 66777666532322244422467888888888887766333 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.48   9.4e+02     144     177 ..      19      51 ..      11      64 .. 0.55
   2 ?    6.7   6.0    0.0023       4.4     104     189 ..      83     173 ..      75     175 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.48
   PF04156.9 144 keirelreeisdlkeevqelrselerlqedlqrl 177
                 ke+++l  ++      +++ r ++++++++l++l
  MMETSP0890-20130614|5266_1  19 KELADLD-KWLNNLPISDKNRAAVKQEADCLEDL 51 
                 4555555.44444444444444444444444444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0023
   PF04156.9 104 laeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl.....qedlqrlqeklaelqrlle 189
                 +ael+ +l++ + +  +  +el s ++++ +++++ kel++ + +l++e+++  ++++ + +  ++        + q +  +l++++rl+e
  MMETSP0890-20130614|5266_1  83 QAELKNKLNSYKTVIADQMSELISAKKEIAEAKKKEKELEDNFIRLHNELQHDIHALRIQLKYFQDQvgelvVKNNQTQGMHLSSKKRLRE 173
                 6778888888888888888888999999999999999999999999988888888877777777766677789999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1469  (0.107446); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.91
# Mc/sec: 589.87
//
Query:       MMETSP0890-20130614|5265_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                       95  (0.00694851); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.35s 00:00:00.75 Elapsed: 00:00:00.52
# Mc/sec: 649.78
//
Query:       MMETSP0890-20130614|5268_1  [L=1076]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   18.0   0.2     0.0037   17.1   0.1    1.4  1  PF13800.1 Sigma factor regulator N-terminal
  ------ inclusion threshold ------
      0.021   13.9   1.7      0.042   12.9   1.2    1.5  1  PF05454.6 Dystroglycan (Dystrophin-associated glycoprotein 1)
      0.021   14.5   0.2      0.074   12.7   0.1    1.9  1  PF12575.3 Protein of unknown function (DUF3753)
       0.13   12.1   0.1       0.13   12.1   0.0    3.0  2  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.52    9.7   3.3       0.45    9.9   1.1    1.8  1  PF04156.9 IncA protein
        2.5    5.5   5.9        3.5    5.0   4.1    1.2  1  PF05758.7 Ycf1
        2.7    7.2  33.6        2.4    7.3   0.0    2.6  2  PF07423.6 Protein of unknown function (DUF1510)


Domain annotation for each model (and alignments):
>> PF13800.1  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.9e-06    0.0037       9      53 ..     987    1031 ..     981    1036 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.9e-06
   PF13800.1    9 Krksilritvlsvilllliviililisllyygvakskesnklrev 53  
                  K+k  +  +v+++i+++++v++l+   +lyy ++k++++++  e+
  MMETSP0890-20130614|5268_1  987 KKKKSTDSSVITIIVVIILVVVLFCAGALYYLCSKQSTKEETPEF 1031
                  4455555599*****9999999************99666665555 PP

>> PF05454.6  Dystroglycan (Dystrophin-associated glycoprotein 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   2.2e-05     0.042      54     211 ..     900    1058 ..     885    1067 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.2e-05
   PF05454.6   54 ftnntlkkepcpkeqvaslskkildedgslreafkralePelkltnisvvgtsscrh.lefiplnqleeiP...sevasteapeedaeksseddvylhtvipavvvaailliagiiamicyrkkrkGkltledqatfik..kGvPiifadelddskPeisssmP 211 
                   t ++l++   ++  +  + +  +d++ +  + +++  + e +  + ++++++s  + +  ++++  + +    ++++  e +  + +k+   d  ++t+i  ++++++l+ ag +  +c ++  k     e+   f++   G P+ ++   +d +P+ ++s+P
  MMETSP0890-20130614|5268_1  900 ITITSLERRRLQNTGIVVVYSITVDSEENAASLATKLEGVEAEDIQTAISQVASTVDaFDELEVTSVDDVSivvDDSTEDEESTSSKKKKKSTDSSVITIIVVIILVVVLFCAGALYYLCSKQSTK-----EETPEFVElvAGKPLPLNSYNEDQQPPLAASVP 1058
                  55566666666666666677777777766666665544444444444444444333225555555555444101443333333444445555677899**********************876543.....333333321135555555555566666666666 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.8e-05     0.074      33      65 ..     979    1011 ..     967    1019 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.8e-05
   PF12575.3   33 dkkklkkkkensssniiiliiliiivvivvllv 65  
                  d++++ +kk+++s+ + +++i+++i+++vvl++
  MMETSP0890-20130614|5268_1  979 DEESTSSKKKKKSTDSSVITIIVVIILVVVLFC 1011
                  555555566666666667777777777777775 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.3  13.5         7   1.4e+04      13      54 ..     756     796 ..     750     848 .. 0.58
   2 ?   12.1   0.0   6.9e-05      0.13      46      94 ..     978    1027 ..     956    1032 .. 0.58

  Alignments for each domain:
  == domain 1    score: -15.3 bits;  conditional E-value: 7
   PF06024.7  13 kVeyIPlkLalnd.............dedennkaenkkntksaapknditeeesk 54 
                 +++ I l+L   +             d              + +++n+i+e++++
  MMETSP0890-20130614|5268_1 756 AIDDIKLCLTSCEiededndegeiddD--------------EDEDENEIDEDDDE 796
                 677788888755533333333333221..............33333333333222 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.9e-05
   PF06024.7   46 nditeeeskaekaqatnillisllavlcvlvllyv..iyYFvilrerqkss 94  
                  +d ++++s ++k+++t+  +i++++v+ ++v+l+    +Y++ +++ +k+ 
  MMETSP0890-20130614|5268_1  978 EDEESTSS-KKKKKSTDSSVITIIVVIILVVVLFCagALYYLCSKQSTKEE 1027
                  22233333.455666666666666666666666542346666666666554 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.1   0.00023      0.45      38      72 ..     995    1029 ..     991    1069 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00023
   PF04156.9   38 sallgivliAlgvvLlalgllllllkapvqseede 72  
                  s++ +iv+i+l+vvL+ +g l+ l+++++  ee  
  MMETSP0890-20130614|5268_1  995 SVITIIVVIILVVVLFCAGALYYLCSKQSTKEETP 1029
                  67788888888888888887777777776665543 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   4.1    0.0018       3.5     237     290 ..     783     890 ..     729    1011 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0018
   PF05758.7 237 eeekkkeieaesekkrakqeqeeeeeed.......sslaseekedkdkideqeekkveek...............................................k 290
                 e+e ++ei+++ +++++++e+e +e+ed       +   + e+ed+++ide+ ++++ ++                                                
  MMETSP0890-20130614|5268_1 783 EDEDENEIDEDDDEDEDEDENEIDEDEDddededdEDEDDGEDEDENEIDEDDDEGEIDEddgedededngdgiadsrtiessfsirglsleeaetnidlfaqaiadV 890
                 222223333332222222222222222211111112223445555555555555555544455555555666666666665555555555555555555555555550 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5  21.7      0.31     6e+02      44     121 ..     772     850 ..     757     862 .. 0.42
   2 ?    7.3   0.0    0.0012       2.4       6      40 ..     985    1021 ..     920    1051 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.31
   PF07423.6  44 asadeeeeeksedeekteeeevkeee..keaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnv 121
                 + +de e +  ede+++e++e ++e+  +++++ +++ed ++++++de++++ e+e++++ +e+++e+e  ++++e++++
  MMETSP0890-20130614|5268_1 772 EDNDEGEIDDDEDEDENEIDEDDDEDedEDENEIDEDED-DDEDEDDEDEDDGEDEDENEIDEDDDEGEIDEDDGEDEDE 850
                 233333333333333333333333330033333333333.3333333333333334444444444444444444444443 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0012
   PF07423.6    6 rskrrkanvvLniaiaiVvvliv..ivaaqllvgnsk 40  
                   +k++k++    i i++V++l+v  + a+ l    sk
  MMETSP0890-20130614|5268_1  985 SKKKKKSTDSSVITIIVVIILVVvlFCAGALYYLCSK 1021
                  3455666555555555555555400555555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1516  (0.110884); expected 273.4 (0.02)
Passed bias filter:                      664  (0.0485664); expected 273.4 (0.02)
Passed Vit filter:                       161  (0.0117759); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.74u 0.39s 00:00:03.13 Elapsed: 00:00:01.63
# Mc/sec: 1581.89
//
Query:       MMETSP0890-20130614|5269_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-16   57.7   0.0    1.5e-15   57.1   0.0    1.2  1  PF08007.7 Cupin superfamily protein
    1.8e-07   30.8   0.0    4.7e-06   26.1   0.0    2.3  1  PF13621.1 Cupin-like domain
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.075   12.4   0.0    1.5  1  PF07883.6 Cupin domain


Domain annotation for each model (and alignments):
>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   3.3e-19   1.5e-15     115     234 ..     131     251 ..     119     275 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 3.3e-19
                 --EEEEE--------SEE-SSEEEEEEEE--EEEEEE--SSTT-SS-EE--TTT--...--SEEEEE----EEEE----EEEEE---..----EEEEEEEE-TT..-----HHHHH----HH CS
   PF08007.7 115 gsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvykptvpelelkseeplkildef.epvedfvLepGDlLYlPrgviHqgvaed.esltlSvglraptaaellesvldllldklpeide 234
                  + vY++++g + +g+H D  D+ + Q+ G+k W +  p     ++++  +++  ++       + Le+GD +++Pr+++H+++a d  s++l++g+ a    ++ ++++ ++ ++ +++ +
  MMETSP0890-20130614|5269_1 131 TAHVYVSTAGGSALGNHTDVTDIAVYQVAGHKDWLLCPPDLTAIKFDKCRTFSPSEMSdLECSKVRLEAGDAMFIPRRTVHSARASDaLSVHLTIGIPARANGDFYSDIVAAVHYSSERR-H 251
                 6789*********************************98888888888888876665533355899*********************************999999999988888777665.3 PP

>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     1e-09   4.7e-06      82     238 ..      88     223 ..      48     227 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1e-09
   PF13621.1  82 fldkleagedkrseeylylq..nsnlaeefpelredsdlpfapelfgkkpeavnlWlGnsa.sssslHhDhyeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvdvenpdlekfprfkdakalevelepGevLYlPalWfHeVsssseegvhi 238
                 +l++++a+  ++  +++y++  ++ ++ee++ +  d  lp+     + k+  +++++++ + s  + H D+ +   ++v+G K+++L+pp+ +                 +++++       +++d +  +v+le+G+++++P    H  + s+   vh+
  MMETSP0890-20130614|5269_1  88 LLESMKAQG-QS--AVFYIEklSTGVPEEYEPFLGD-ALPMV----QAKKWTAHVYVSTAGgSALGNHTDVTDIAVYQVAGHKDWLLCPPDLTA----------------IKFDKCRTFSPSEMSDLECSKVRLEAGDAMFIPRRTVHSARASDALSVHL 223
                 344444442.23..3444433377788888888875.56654....456778899999988799**************************8332................3333444444458899999**********************995555554 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05     0.075      38      60 ..     194     216 ..     188     225 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
                 EEEE-TT-EEEE-TT-EBEEB-- CS
   PF07883.6  38 eveleaGdsvyfpagtpHrfrNt 60 
                 +v+leaGd++++p+ t H  r  
  MMETSP0890-20130614|5269_1 194 KVRLEAGDAMFIPRRTVHSARAS 216
                 799***************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       971  (0.0710211); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.61
# Mc/sec: 1543.88
//
Query:       MMETSP0890-20130614|5271_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-09   35.3   0.0    1.4e-08   34.3   0.0    1.6  1  PF04564.10 U-box domain
    1.9e-05   24.0   0.1    3.7e-05   23.1   0.1    1.4  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00041   19.7   0.3    0.00085   18.6   0.2    1.4  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   3.2e-12   1.4e-08       3      50 ..      54     100 ..      52     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 3.2e-12
                 GGGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT.SSB-TTT-SB-- CS
  PF04564.10   3 defldpitlelmkdPvilPsgitvDrstiekhllsrdktdPftreplt 50 
                 +   +pit  lm++P+++ +g++++r +iek+l++ ++ +P t+e + 
  MMETSP0890-20130614|5271_1  54 ESHTCPITHNLMCQPCVAEDGHMYERIAIEKWLDK-HRRSPKTNESMG 100
                 5678*******************************.999**9998764 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   8.1e-09   3.7e-05      10      48 ..      55      90 ..      50     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.1e-09
                X-B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHH CS
   PF13445.1 10 ifaCpiske.qsteqnpPvvLpCGhvisrealeklakggr 48
                + +Cpi+   +++    P v   Gh ++r a+ek++ ++r
  MMETSP0890-20130614|5271_1 55 SHTCPITHNlMCQ----PCVAEDGHMYERIAIEKWLDKHR 90
                458**********....*******************9655 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   1.9e-07   0.00085       9      47 ..      53      90 ..      48      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.9e-07
                XXX-B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT- CS
   PF11789.3  9 rislkCpltlkpfkePvtskkCnHvFEkeaIlkmlkrkk 47
                + s +Cp+t + + +P       H++E+ aI+k l++++
  MMETSP0890-20130614|5271_1 53 IESHTCPITHNLMCQPCVAED-GHMYERIAIEKWLDKHR 90
                56899***********99987.9************5443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.61
# Mc/sec: 1166.75
//
Query:       MMETSP0890-20130614|5270_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-45  155.2   0.1    5.4e-45  153.6   0.1    2.4  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    1.7e-38  130.9   0.2    3.7e-38  129.8   0.1    1.6  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    3.9e-23   81.5   8.3    1.3e-19   70.2   0.5    3.9  4  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.6e-10   40.5   0.3    2.4e-10   39.9   0.2    1.3  1  PF12831.2  FAD dependent oxidoreductase
    1.4e-09   37.2   2.3    6.8e-09   34.9   0.2    2.2  2  PF01134.17 Glucose inhibited division protein A
    6.8e-09   35.9   0.0      2e-06   27.8   0.0    2.4  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    2.2e-06   26.6   1.9    2.2e-06   26.6   1.3    2.3  3  PF00890.19 FAD binding domain
    2.4e-06   26.7   2.2    2.3e-05   23.4   0.1    2.3  2  PF01946.12 Thi4 family
    4.8e-06   26.3   6.3     0.0036   17.1   1.4    2.7  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    2.5e-05   22.8   5.2    0.00051   18.5   0.6    3.2  3  PF03486.9  HI0933-like protein
    8.1e-05   21.5   0.0       0.27    9.9   0.0    2.8  3  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0003   19.8   6.4      0.034   13.0   0.7    2.5  2  PF01494.14 FAD binding domain
     0.0046   16.4   0.9       0.31   10.4   0.1    2.3  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
      0.006   15.4   7.8      0.018   13.8   0.2    3.1  3  PF01266.19 FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.45   10.0   5.1       0.12   11.9   0.2    2.3  3  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
       0.56    8.9   2.7       0.47    9.1   0.2    1.9  2  PF05834.7  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.1   6.3e-48   5.4e-45       1     199 [.      30     347 ..      30     348 .. 0.96

  Alignments for each domain:
  == domain 1    score: 153.6 bits;  conditional E-value: 6.3e-48
                 SEEEE----HHHHHHHHHHHTTSEEEEE...CSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH.....................HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----.TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-................................................................................................-GGGC.HHSS--BESSSSBBE-TTSBCSSTTEEE---TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali...ekeggtcvnrgclpkkllvevaegreelee.lal.....................kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtl.gipgvevailargvedsdeilellekpkkvvvvG................................................................................................tklla.ekagveldprggivVdeylrtsvpgiyaiGDvaegk 199
                 dvv++GgGp+G+ aa+++ q glk+a++   +k+ggtc+n+gc+p+k+l+++++ +ee+++ ++                      k vd l ++gie+l++k +v++ +g +k++ ++    +  +g ++d+  ++++iAtG++p+ l ++p   v+++++++ ds+ +lel++ pkk++vvG                                                                                                t +l+ e++g+e+d++g+i+V+e+++t+ p+i+a GD+++g+
  MMETSP0890-20130614|5270_1  30 DVVVVGGGPGGYVAAIKASQLGLKTACVesrGKLGGTCLNVGCIPSKALLQSSHLYEEAKThFKThgiqingeivvdleammknkaKSVDGL-TGGIEYLFKKYKVDYLKGFGKLKGPNAVHVDLLDGGTEDLDTKNIMIATGSEPTPLkPCP---VDNKLKKIVDSTGALELEAIPKKMAVVGggviglemgsvwrrlgsevtviefldrivpgvdaelgknflrvlkkqgmkfklstgvvasqvtdngvtltvapakggdetnldfdvvlvatgrrpfTSGLGlEELGIETDRQGRIQVNEHFQTKYPSIFAFGDCIDGP 347
                 8**********************************************************997777***************************.***************9999999555555557788999***************99888888...88999*************************************************************************************************************************************************************9976 PP

>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.1   4.4e-41   3.7e-38       1     109 [.     376     484 ..     376     485 .. 0.99

  Alignments for each domain:
  == domain 1    score: 129.8 bits;  conditional E-value: 4.4e-41
                 BEEEEESSSEEEE----HHHHHHHT..EEEEEEEECCGHHTTTTT.CCEEEEEEEETTTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHHH CS
  PF02852.17   1 vpsvvftdpeiasvGlteeeAkkaggeikvgklpfkandralayaetkgfvKlvvdaetgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealkea 109
                 +p v++t+pe+a++G+tee++k+ag+++kvg++pf+an+ra+a a+++g+vK+++++ ++++lG+hi+G +a+e+i e  + +++g++ ed+a+tv++hPtlsea+kea
  MMETSP0890-20130614|5270_1 376 IPGVIYTHPELATAGKTEEQLKEAGINYKVGTFPFSANSRARAVADSEGIVKILTEETSDRILGVHIIGSNAGEMIMEGVIGMEYGASSEDIARTVHPHPTLSEAFKEA 484
                 79*********************************************************************************************************98 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.5   0.00012     0.099       2      35 ..      31      64 ..      30      70 .. 0.93
   2 !   70.2   0.5   1.5e-22   1.3e-19       1      78 [.     204     279 ..     204     288 .. 0.93
   3 ?   -2.2   0.0       5.8     5e+03      46      61 ..     392     407 ..     385     432 .. 0.76
   4 ?   -1.1   0.0       2.6   2.3e+03       8      25 ..     454     471 ..     453     478 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
                EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierrdrll 35
                vvvvGGG  G  +A+ +++lg k+ ++e r +l 
  MMETSP0890-20130614|5270_1 31 VVVVGGGPGGYVAAIKASQLGLKTACVESRGKLG 64
                8****************************99986 PP

  == domain 2    score: 70.2 bits;  conditional E-value: 1.5e-22
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEEEEEEEEE CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsadgvevkle 78 
                 +++vvGGG+iGlE+++++++lg++Vtvie +dr+ +++d+e++k++ + l+k+g++++l t v++   +++g  v+l+
  MMETSP0890-20130614|5270_1 204 KMAVVGGGVIGLEMGSVWRRLGSEVTVIEFLDRIVPGVDAELGKNFLRVLKKQGMKFKLSTGVVASQVTDNG--VTLT 279
                 689****************************************************************99999..5543 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 5.8
                 HHHHHHHTTEEEETTE CS
  PF00070.22  46 lqkklekngievllnt 61 
                  +++l++ gi+ + +t
  MMETSP0890-20130614|5270_1 392 TEEQLKEAGINYKVGT 407
                 5688999999988777 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 2.6
                 -HHHHHHHHHHHHTTSEE CS
  PF00070.22   8 GyiGlElAaalaklgkkV 25 
                 G+iG+E++a   +++  V
  MMETSP0890-20130614|5270_1 454 GVIGMEYGASSEDIARTV 471
                 99*****99887777655 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   2.9e-13   2.4e-10       1      38 [.      30      67 ..      30     101 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.9e-13
   PF12831.2  1 DvvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGml 38
                DvvVvGGgp+G +AAi+A++lG+k++ ve rg lGG+ 
  MMETSP0890-20130614|5270_1 30 DVVVVGGGPGGYVAAIKASQLGLKTACVESRGKLGGTC 67
                9***********************************86 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.2     8e-12   6.8e-09       1      58 [.      30      90 ..      30     173 .. 0.85
   2 ?    2.2   0.1     0.068        58       2      30 ..     205     232 ..     204     290 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 8e-12
                SEEEE-------HHHHHHHH----EEEE...ES-GGG-----SSSEE-------HHHHHHH CS
  PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEida 58
                dv+V+GgG  G+ AA++a++lG+k++ +    +  +t+++++C ps   + +++l +E + 
  MMETSP0890-20130614|5270_1 30 DVVVVGGGPGGYVAAIKASQLGLKTACVesrGKLGGTCLNVGCIPSKALLQSSHLYEEAKT 90
                79**************************88878889******************9999864 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.068
                 EEEE-------HHHHHHHH----EEEEES CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 + V+GgG  G+e      rlG +v+ i +
  MMETSP0890-20130614|5270_1 205 MAVVGGGVIGLEMGSVWRRLGSEVTVI-E 232
                 67**********************998.3 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.4e-09     2e-06       1     177 [.      32     212 ..      32     232 .. 0.60
   2 ?    5.6   0.0     0.015        13      86     159 ..     247     329 ..     241     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.4e-09
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysf..vrlhqpsf.fssdfgvndleklsldsspkwrikaelasgeeisayledvarrl.....glk..vrlstrvtevere............gdr..fevrvtdg..revrakalvlatgavskpktlglpg..sadkeavhleevlepedlkgkrvvVvGggh 177
                 +VvG+G+ G  +a+++ + g++  + v+++ k Gg+ l+++      l q+s  ++++ +  +   +              +   ei+  le ++++      gl+  + +  +      +            +++   +v++ dg  +++++k++++atg   +p +l+      + k+ v ++ +le e + +k+++VvGgg 
  MMETSP0890-20130614|5270_1  32 VVVGGGPGGYVAAIKASQLGLK-TACVESRGKLGGTCLNVGCIpsKALLQSSHlYEEAKTHFKTHGI--------------QINGEIVVDLEAMMKNKaksvdGLTggIEYLFK------KykvdylkgfgklKGPnaVHVDLLDGgtEDLDTKNIMIATGS--EPTPLKPCPvdNKLKKIVDSTGALELE-AIPKKMAVVGGGV 212
                 6*********************.59*************87744223333433303333333344444..............444455555555555542222211122111111......11122222223333332266666555799************6..555554333212445889999999997.569********96 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.015
   PF13738.1  86 ayledvarrlglkvrlstrvteveregdrfevrvtdg.....revrakalvlatgavskpktlglpg...sadk.eavhleev 159
                 + + +v++++g+k++lst v + + ++++ +++v         +++ +++++atg +  ++ lgl+    ++d+  +++++e 
  MMETSP0890-20130614|5270_1 247 KNFLRVLKKQGMKFKLSTGVVASQVTDNGVTLTVAPAkggdeTNLDFDVVLVATGRRPFTSGLGLEElgiETDRqGRIQVNEH 329
                 5677899*********************999999443457889999*********7655555555557775555355777765 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   1.3   2.6e-09   2.2e-06       1      37 [.      30      66 ..      30      69 .. 0.95
   2 ?   -3.0   0.1       2.5   2.2e+03       3      29 ..     206     232 ..     205     235 .. 0.89
   3 ?   -1.6   0.0      0.95   8.1e+02     379     408 ..     315     346 ..     313     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.6e-09
                SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSG CS
  PF00890.19  1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetgga 37
                DvvV+G+G +G++AA++a++ glk+a+ve  ++ gg+
  MMETSP0890-20130614|5270_1 30 DVVVVGGGPGGYVAAIKASQLGLKTACVESRGKLGGT 66
                9****************************99998885 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.5
                 EEE-------HHHHHHHCHTT-EEEE- CS
  PF00890.19   3 vViGsGlAGlaAAleaaeaglkvavve 29 
                  V+G+G+ Gl  +   ++ g +v+v+e
  MMETSP0890-20130614|5270_1 206 AVVGGGVIGLEMGSVWRRLGSEVTVIE 232
                 69********99999999999999987 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.95
                 --B-------........S-B--EE-----B- CS
  PF00890.19 379 Gvrtdenarv..ldadgqpipGLYAaGevagg 408
                 G++td ++r+   ++ ++  p  +A G ++ g
  MMETSP0890-20130614|5270_1 315 GIETDRQGRIqvNEHFQTKYPSIFAFGDCIDG 346
                 89999999986566667899999999998855 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.7e-08   2.3e-05       3      69 ..      14      80 ..      12     109 .. 0.85
   2 ?    2.6   0.2     0.064        55      15      63 ..     200     249 ..     187     282 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.7e-08
                HHHHHHHHHHHHHTEEEEEEE-------HHHHHHHTSTS-EEEEESSS---------------EEEE CS
  PF01946.12  3 aiveryfedllkyaesDvvivGaGssGltaayylakkdlkvailerklsiGGGawlGGqlfskvvvr 69
                ai +r ++ + +  + Dvv+vG+G+ G +aa   ++ +lk+a +e++  +GG     G + sk +++
  MMETSP0890-20130614|5270_1 14 AIASRLVRCMSSSEQYDVVVVGGGPGGYVAAIKASQLGLKTACVESRGKLGGTCLNVGCIPSKALLQ 80
                788888999999999*************************************988777776666655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.064
                 HTEEEEEEE-------HHHHHHHTSTS-EEEEE..SSS------------- CS
  PF01946.12  15 yaesDvvivGaGssGltaayylakkdlkvaile..rklsiGGGawlGGqlf 63 
                  + + +++vG+G  Gl  + +  + +  v+++e   ++ +G  a lG   f
  MMETSP0890-20130614|5270_1 200 AIPKKMAVVGGGVIGLEMGSVWRRLGSEVTVIEflDRIVPGVDAELGK-NF 249
                 5566789**************999999999999545777777777654.34 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.4   4.2e-06    0.0036       1      36 [.      33      68 ..      33      72 .. 0.96
   2 !   10.3   0.1   0.00057      0.49       1      30 [.     207     236 ..     207     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.2e-06
   PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraa 36
                +vG+G +G vaA  +++ g +   +e+r  lGG + 
  MMETSP0890-20130614|5270_1 33 VVGGGPGGYVAAIKASQLGLKTACVESRGKLGGTCL 68
                8********************************996 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00057
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdr 30 
                 +vG+G+ Gl +   +++ g +v+v+e  dr
  MMETSP0890-20130614|5270_1 207 VVGGGVIGLEMGSVWRRLGSEVTVIEFLDR 236
                 8************************96666 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.6   5.9e-07   0.00051       1      36 [.      29      64 ..      29      71 .. 0.93
   2 ?    1.5   0.1     0.087        74       2      30 ..     204     232 ..     203     238 .. 0.89
   3 ?    2.9   0.0     0.033        28     115     188 ..     249     327 ..     243     341 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.9e-07
   PF03486.9  1 kdviviGgGaAGlmaAisaakrgakVllldkakklg 36
                +dv+v+GgG+ G  aAi+a++ g k++ +++  klg
  MMETSP0890-20130614|5270_1 29 YDVVVVGGGPGGYVAAIKASQLGLKTACVESRGKLG 64
                69****************************999998 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.087
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllld 30 
                 +++v+GgG  Gl    +  + g++V++++
  MMETSP0890-20130614|5270_1 204 KMAVVGGGVIGLEMGSVWRRLGSEVTVIE 232
                 689*********9999999********99 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.033
   PF03486.9 115 llkelkeagvkirletevksvekeedgafrvktk.....seeeleadklvlAtGGkSiP.klGstgkgyklaeqfghtiv 188
                 +l+ lk++g+k++l+t v + + +++g +++++      +e++l  d +++AtG   +   lG ++ g++  +q  +++ 
  MMETSP0890-20130614|5270_1 249 FLRVLKKQGMKFKLSTGVVASQVTDNG-VTLTVApakggDETNLDFDVVLVATGRRPFTsGLGLEELGIETDRQGRIQVN 327
                 678899************999998888.55555334566788999*********87654157777777776666666665 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.75   6.4e+02     187     200 ..      25      38 ..       9      54 .. 0.75
   2 !    9.9   0.0   0.00032      0.27     134     204 ..     149     216 ..     133     233 .. 0.79
   3 !    8.2   0.0    0.0011      0.94     288     339 ..     252     302 ..     245     304 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.75
   PF13434.1 187 llkkkriavvGsGq 200
                 + ++ +++vvG+G 
  MMETSP0890-20130614|5270_1  25 SSEQYDVVVVGGGP 38 
                 56777888888874 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00032
   PF13434.1 134 veskdaegeeeellarnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaae 204
                 v+++  +g +e l ++n++++tG+ep+  + +   ++ ++++ s+  le    ++ +k++avvG+G  + e
  MMETSP0890-20130614|5270_1 149 VHVDLLDGGTEDLDTKNIMIATGSEPTPLKPCPVDNKLKKIVDSTGALEL---EAIPKKMAVVGGGVIGLE 216
                 555447889999***********887654444443445788888888876...5899*********87766 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0011
   PF13434.1 288 vegekrvrllpnreveaveaegkgeveltlrneesgeeetleadavvlATGY 339
                 v +++ ++++ ++ v a + +  ++v+lt+   + g+e++l++d+v++ATG 
  MMETSP0890-20130614|5270_1 252 VLKKQGMKFKLSTGVVASQVTD-NGVTLTVAPAKGGDETNLDFDVVLVATGR 302
                 5566667777788888877776.6***************************5 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.7     4e-05     0.034       2      34 ..      29      61 ..      28      65 .. 0.93
   2 !    9.2   0.3   0.00058       0.5       5     125 ..     206     357 ..     203     373 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4e-05
                ECEEE--------HHHHHHHHH.HHEEEEESSS CS
  PF01494.14  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekhs 34
                +dV++VG+Gp G ++a   s+ G ++ +ve + 
  MMETSP0890-20130614|5270_1 29 YDVVVVGGGPGGYVAAIKASQLGLKTACVESRG 61
                79***************************9875 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00058
                 EE--------HHHHHHHHH.HHEEEEESSSCCCH------BEHHHHHHHHC---HHHHHCT-.EEE--EEEEEEE...............................HHTTSS-EE-SEEEEECCCHGGTT-CCE--ECCC..CCCHHHHHHC-- CS
  PF01494.14   5 lIVGaGpaGlmlallLseaGvrvvlvekhsttvvlprAdglnqrtmellrqlGledrilaegapnelmgealyne...............................lsdtrikverpkaradlelesspervtvypqtel..eriLvehaeerg 125
                 ++VG+G  Gl  +++ ++ G +v+++e  ++ v+   A+ l +  +++l++ G++ ++    + ++++   +  +                               l++  i + r+ +    e +++ +++++++  +    ++L+++aee+g
  MMETSP0890-20130614|5270_1 206 AVVGGGVIGLEMGSVWRRLGSEVTVIEFLDRIVPGVDAE-LGKNFLRVLKKQGMKFKLSTGVVASQVTDNGVTLTvapakggdetnldfdvvlvatgrrpftsglgLEELGIETDRQGRIQVNE-HFQTKYPSIFAFGDCidGPMLAHKAEEEG 357
                 79*************************999999888886.566788888888888776655555555555555446666777777777777777777777777666555555544443333333.44444444443333311466777776666 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.029        25      16      48 ..      24      56 ..      11      63 .. 0.83
   2 !   10.4   0.1   0.00036      0.31      20      54 ..     202     236 ..     188     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.029
                --B---EEEEE-------HHHHHHHH---EEEE CS
  PF01262.16 16 ggvkpakvvviGaGvvGlgAievakglgaevva 48
                ++ +   vvv+G+G  G  A+  a++lg ++  
  MMETSP0890-20130614|5270_1 24 SSSEQYDVVVVGGGPGGYVAAIKASQLGLKTAC 56
                5666778*********************98765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00036
                 --EEEEE-------HHHHHHHH---EEEE--SSTT CS
  PF01262.16  20 pakvvviGaGvvGlgAievakglgaevvaldkrpe 54 
                 p k+ v+G+Gv Gl+  +v ++lg ev++++ ++ 
  MMETSP0890-20130614|5270_1 202 PKKMAVVGGGVIGLEMGSVWRRLGSEVTVIEFLDR 236
                 899**************************997765 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   2.1e-05     0.018       1      35 [.      30      65 ..      30      96 .. 0.90
   2 ?    3.4   0.5     0.031        26       2      29 ..     205     232 ..     204     233 .. 0.86
   3 ?    1.0   0.0      0.17   1.4e+02     149     200 ..     245     301 ..     242     329 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
                EEEEE----HHHHHHHHHHHTT-EEEEEESS.STTS CS
  PF01266.19  1 dvviiGgGivGlstAyeLarrglkVtllekg.dias 35
                dvv++GgG  G  +A+ +++ glk++ +e++  +++
  MMETSP0890-20130614|5270_1 30 DVVVVGGGPGGYVAAIKASQLGLKTACVESRgKLGG 65
                9*****************************955554 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.031
                 EEEE----HHHHHHHHHHHTT-EEEEEE CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtlle 29 
                  +++GgG++Gl       r g +Vt++e
  MMETSP0890-20130614|5270_1 205 MAVVGGGVIGLEMGSVWRRLGSEVTVIE 232
                 58*********98888888888888887 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES......EEEEEEEE--- CS
  PF01266.19 149 lvkalaraaeelGveiiegtkVtglereggrvsgvetedg....s.iradkvvlAaG 200
                 l k ++r ++++G ++   t V+  ++ +++v+  +++ +    + ++ d+v +A+G
  MMETSP0890-20130614|5270_1 245 LGKNFLRVLKKQGMKFKLSTGVVASQVTDNGVTLTVAPAKggdeTnLDFDVVLVATG 301
                 5567889999*********************88333322223333255599999998 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7       2.6   2.3e+03       2      30 ..      31      59 ..      30      66 .. 0.86
   2 ?   11.9   0.2   0.00014      0.12       2      56 ..     205     259 ..     204     281 .. 0.86
   3 ?   -2.4   0.0       3.2   2.8e+03     114     137 ..     306     330 ..     305     335 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.6
                EEEE---------HHHHHCT.SEEEEE-S CS
  PF02737.13  2 vaVvGaGtmGagiAavfaragleVvlvdi 30
                v VvG G  G   A  + + gl++  v+ 
  MMETSP0890-20130614|5270_1 31 VVVVGGGPGGYVAAIKASQLGLKTACVES 59
                89*****9999999999999999998876 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00014
                 EEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH..... CS
  PF02737.13   2 vaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklk 56 
                  aVvG G++G ++ +v  r g eV++++  +  +    +++ k++ ++ +k+ +k
  MMETSP0890-20130614|5270_1 205 MAVVGGGVIGLEMGSVWRRLGSEVTVIEFLDRIVPGVDAELGKNFLRVLKKQGMK 259
                 79***************************99999999999999988888887776 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.2
                 -SSS-HHHHCTTSSSGGG.EE--EE CS
  PF02737.13 114 TSslsitelaealkrper.vvglHf 137
                 TS+l ++el  +++r+ r  v  Hf
  MMETSP0890-20130614|5270_1 306 TSGLGLEELGIETDRQGRiQVNEHF 330
                 9***************996677788 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00055      0.47       1      35 [.      30      62 ..      30      69 .. 0.91
   2 ?   -1.3   0.1      0.85   7.3e+02       2      31 ..     205     232 ..     205     239 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00055
   PF05834.7  1 DlvivGaGlAglllAlrlreakpglrvllidagpk 35
                D+v+vG+G+ g   A +   +++gl+ ++++ + k
  MMETSP0890-20130614|5270_1 30 DVVVVGGGPGGYVAAIKA--SQLGLKTACVESRGK 62
                9**************999..9*********98765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.85
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllid 31 
                 +++vG+G  gl +      +++g +v++i+
  MMETSP0890-20130614|5270_1 205 MAVVGGGVIGLEMGSVW--RRLGSEVTVIE 232
                 589*********99988..88888999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:01.03
# Mc/sec: 1151.65
//
Query:       MMETSP0890-20130614|5273_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-77  260.7   5.2    1.7e-77  260.5   3.6    1.0  1  PF00231.14 ATP synthase
  ------ inclusion threshold ------
       0.01   15.9   0.1      0.039   14.0   0.0    1.9  2  PF00582.21 Universal stress protein family
       0.13   11.4   0.5       0.52    9.5   0.1    2.0  2  PF07299.6  Fibronectin-binding protein (FBP)
       0.33   10.7   2.7       0.17   11.7   0.2    1.6  2  PF04871.8  Uso1 / p115 like vesicle tethering protein, C terminal region


Domain annotation for each model (and alignments):
>> PF00231.14  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   3.6   4.8e-81   1.7e-77       1     290 []       6     292 ..       6     292 .. 0.90

  Alignments for each domain:
  == domain 1    score: 260.5 bits;  conditional E-value: 4.8e-81
                 --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHTT---...-----------....-EEEEEE---------HHHHHHHHHHHHCTSSTTS....EEEEE--HHHHHHHT.STTTEEEEEE----S--HHHHHHHHHHHHHTS-----SEEEEEEEEESSSSEEEEEEEEE--......HHHHHTSTT----B--..TSSSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------ CS
  PF00231.14   1 aslkeikrriksvkntqkItkAMkmvaasklrkaqerveaarpYae...klekvlselasks...eelehplleqreevkkvllivitsDrGLcGgfNsnvikaaeellkelkaegkevkllvvGkkgrdflkr.rkkevvaevtgvsdkptfeeaqeiaeelielfekgevdevelvynkfknalsqeptveqllpiekeakeeeeeeeesesdyefep.daeevleellpkyvesqlyrallesaasEhaaRmtAMksAtdNakelikkLtlqynraRQaaITqEliEIvsGaeal 290
                 a+ kei  ri+++kn++kIt++Mkmv+asklr  q r+eaa+++a+   +l ++ +++ ++    +++  +l+e +e +kk++++++tsD+GLcGg+Ns +++ ++ l  ++++   +++l+vvG+kgr++l+r  ++++  ++t+v    +f+ a+++a++l+e++ ++++   ++ ynkf++a+ + pt  +++p       + + e+e+ ++yefep  ++evl +l + y++++l++ ++e+a+sE+++Rm+AM++A++Na+eli+kLtl ynraRQa IT+EliEI+sGa+al
  MMETSP0890-20130614|5273_1   6 ATEKEIAMRITATKNIKKITSSMKMVSASKLRGDQMRLEAAKAFAAyanNLGTLRTSF-EEMnneKDSLLTLFEDKEGKKKNVVVALTSDKGLCGGVNSAIARGVRGLCGQNQE--ADISLVVVGEKGRSQLRRmVGDKLDFAYTEVAAPLNFSFASSVAQNLLESYPDNSI--YHIAYNKFISAIAYIPTLATIMP------FAFDGEKETLASYEFEPeAKQEVLFNLSEYYLATELFYGMMEAATSEQSSRMQAMENASKNAGELIDKLTLLYNRARQARITTELIEIISGASAL 292
                 5779*******************************99888877665111444443333.22223266778899999**********************************9998..579***************78888****************************98755..89*********************......4556789999*******55689***********************************************************************97 PP

>> PF00582.21  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.039      54     120 ..      69     138 ..      35     143 .. 0.72
   2 ?   -1.2   0.0      0.56   1.9e+03      14      37 ..     246     270 ..     240     281 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHH...HHHHHH---EEEEEEESSSHHHHHHHHHHHCT-SEEEEE--CC-TTTTCC CS
  PF00582.21  54 eeeeeleeelaeaeada...kkaaeaggekvevvvlegdpaeaivevaeeenadliVmGsrgrsglrrll 120
                 e++++l   ++++ +++    ++  ++g +  v      + + ++   +e +++l+V+G +grs lrr++
  MMETSP0890-20130614|5273_1  69 EKDSLLTLFEDKEGKKKnvvVALTSDKGLCGGVNSAIARGVRGLCGQNQEADISLVVVGEKGRSQLRRMV 138
                 444444444444444445566777777777777777778888999999*******************975 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.56
                 HHH.HHHHHHHHHHHCSEEEEEEEE CS
  PF00582.21  14 esk.rAlewAlelakargaelillh 37 
                 +s+ +A e A + a++  ++l+ll+
  MMETSP0890-20130614|5273_1 246 SSRmQAMENASKNAGELIDKLTLLY 270
                 4445899999999999988899988 PP

>> PF07299.6  Fibronectin-binding protein (FBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00015      0.52     106     172 ..      64     132 ..      58     137 .. 0.73
   2 ?   -1.1   0.0      0.25   8.7e+02      42      80 ..     249     287 ..     235     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00015
   PF07299.6 106 eeldlkeltYlg.Wndegsqkkyivyke.kgkliGikgtissstvkgiCsiCn..kesevslflaktksks 172
                 ee++ ++ + l+ ++d+  +kk +v+   ++  +G+ g ++s + +g+  +C   +e ++sl++   k++s
  MMETSP0890-20130614|5273_1  64 EEMNNEKDSLLTlFEDKEGKKKNVVVALtSD--KGLCGGVNSAIARGVRGLCGqnQEADISLVVVGEKGRS 132
                 5555555555552566666666666665244..6******************74478899***99888766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.25
   PF07299.6  42 lelfeelseeekellekllkvkdrkeaeklLeelkeyvi 80 
                 ++++e+ s++  el++kl+ + +r++ +++ +el e++ 
  MMETSP0890-20130614|5273_1 249 MQAMENASKNAGELIDKLTLLYNRARQARITTELIEIIS 287
                 456788899999999999999999999999999988876 PP

>> PF04871.8  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.8e-05      0.17      43     102 ..       8      86 ..       2      96 .. 0.81
   2 ?   -2.7   0.1       1.3   4.5e+03       7      22 ..     241     256 ..     237     270 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.8e-05
   PF04871.8  43 ekalkearltrkkeleksasttkeleaik...ekldeE.................alkesqkeqdDLLvlladqeeKvek 102
                 ek+++  r t+ k ++k  s +k + a k   ++++ E                 + +e+++e+d LL l+ d+e K + 
  MMETSP0890-20130614|5273_1   8 EKEIAM-RITATKNIKKITSSMKMVSASKlrgDQMRLEaakafaayannlgtlrtSFEEMNNEKDSLLTLFEDKEGKKKN 86 
                 556665.777777888888888888777755567777799999999999999999889*****************99765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.3
   PF04871.8   7 aeeeqslaakalelet 22 
                 a +eqs+  +a+e   
  MMETSP0890-20130614|5273_1 241 ATSEQSSRMQAMENAS 256
                 3344444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.86
# Mc/sec: 816.43
//
Query:       MMETSP0890-20130614|5275_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-25   88.8   0.0    1.3e-24   86.8   0.0    1.9  1  PF00685.22 Sulfotransferase domain
    0.00036   21.3   0.7     0.0023   18.6   0.5    2.2  1  PF13469.1  Sulfotransferase family
  ------ inclusion threshold ------
       0.85    9.5   3.2        3.2    7.6   2.2    2.0  1  PF13081.1  Domain of unknown function (DUF3941)


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   2.9e-28   1.3e-24       1     244 [.      90     399 ..      90     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 2.9e-28
                 TTSEEEEESTT---HHHHHHHHHHHTCCETTGGG-TGCCT-HHHSEETT-TCCGSGCCGCCCCCCHHGG-TTHHHHHCHCTSS.EEEE...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCT.................CSTTT--.-HHHHHHHHH.................................................HHHCCH-HHHHHHHHHHTCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--.................HHHHHHHTCHHHHHC-CCCSSTCCH.S-SSEE---TTGGGT--HHHHHH CS
  PF00685.22   1 dddvlivtypKSGttwlqellslitsegdfekaeepalfnardrspfLelydlyfpnslkpqehlsyshvaekvvrlralesprllktHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslk.................llkepet.pfeeffdlfle................................................grvvcgsyfdhveewlklrkkgnvlflrYEdlkkdpakeikeiaeFlGip.................lekivkhlsfenmksnpvsnkskls.ekffrkgqvgdWkneltveqaek 244
                 ++d+li++yp++G +w+q++++ +    d      p   +++d s++  ++        +      +  + + ++r++++++pr+++tH   +  p+ +  +  Kii + R+p+d++vS +   r+l+                 +  + +t +++++fd f++                                                    +  ++  + + +  +  +++l+++YEdl+++p k++k ++ Fl  +                 + k++ ++  +n  +++++++ + + +  +rkg vgd++ +lt+e+ e+
  MMETSP0890-20130614|5275_1  90 PSDILIASYPRCGLSWIQAITWFLMRSDDE--GRLPNGWQRWDGSRGPTYC--------ED-----RTATRMAPKRVANQQDPRIFTTHARPEHWPNII-ADGGKIIIITRDPRDAMVSTFFRLRELGielrafgglddrvfkcaK--ACDTqSLDSVFDDFNDngdkvnclslliddpqeknnasshqtnlqqgknggvepydatksknrrFYADYYTWHAEIAKLMDIYGSDRFLLVTYEDLQENPVKVTKDVYAFLVQApttsngnedprqyrqgiMSKVASQAKINNAIDFASFENIQARgNAALRKGVVGDHRVYLTPEHWEA 399
                 579********************6655555..2333333336666666665........22.....357889***********************8877.5569******************************999999999651..333334567777777777777777777777777777777777777777788888888777743344444455666666666******************************9889********7777777777777777777777777777655559*******************9886 PP

>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5   5.1e-07    0.0023       3     180 ..      93     256 ..      91     336 .. 0.49

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 5.1e-07
   PF13469.1   3 vfilGlpRSGttlLaraLlalhpaelgllapqapaladapkglaeraallpllradllsalrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahllfpd.rfvvllRdPlavlasllrlllasllrrspyalrlalrkleallrllllgla..................................l 180
                 ++i++ pR+G ++++ a+                    ++ + +               ++r + +++r+++ r+  ++ ++ +  +a+ r ++    r + ++ +  ++++++           + ++++++RdP+++++s        ++r++++  +l+   +++++ + ++  +                                  +
  MMETSP0890-20130614|5275_1  93 ILIASYPRCGLSWIQ-AIT-------------------WFLMRSD-------------DEGRLPNGWQRWDGSRGPTYCEDRTATRMAPKRVANQQDPRIFTTHARPEHWPNII---------ADGgKIIIITRDPRDAMVS----T---FFRLRELGIELRAFGGLDDRVFKCAKACdtqsldsvfddfndngdkvnclslliddpqeknnA 256
                 567777888877777.555...................2222222.............33333334444444444444444444444444444444444444444555555555.........444466********98888....4...455555555554444444444444444466664444444444444444444444444444440 PP

>> PF13081.1  Domain of unknown function (DUF3941)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.2    0.0007       3.2       3      17 ..     252     268 ..     251     269 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0007
   PF13081.1   3 eKNmqk..qKNiQqGKr 17 
                 eKN++   q N QqGK+
  MMETSP0890-20130614|5275_1 252 EKNNASshQTNLQQGKN 268
                 8***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:01.09
# Mc/sec: 1211.37
//
Query:       MMETSP0890-20130614|5274_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-28   97.3   4.6    1.3e-27   96.5   3.2    1.3  1  PF05700.6 Breast carcinoma amplified sequence 2 (BCAS2)
  ------ inclusion threshold ------
      0.029   14.1   1.6      0.054   13.3   1.1    1.4  1  PF08359.6 YsiA-like protein, C-terminal region


Domain annotation for each model (and alignments):
>> PF05700.6  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   3.2   1.9e-31   1.3e-27       7     208 ..      48     233 ..      40     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 1.9e-31
   PF05700.6   7 vvvDaLPYiDddydepsvreaadalveeElkrerptknllkelpslqkpdyslfetpllekelervekgqpmkeldmsrYelpeppagkkeddkawkealknaaaqlehqairlenlellskygkeaWkvyneqLeallkrlekelaelkeeieevNreRKyeQeeagekLssleqrwqelvsknleievaceeLekeieql 208
                 v +D L Y+++ y  +++r ++d+++e+E+   + t+        +  +++s +  +l+ ++++r e+    ++++++rY+ ++p+ ++  ddk+w +a++n  aqle q +r  nlell+++g+ aW+ + ++L+ l+ +le  + + ++++ ++N +RK++Qe  + ++   e++ ++ ++  le+++a+++Le++i + 
  MMETSP0890-20130614|5274_1  48 VRMDGLDYMES-Y-PAQERRRIDEMIESEMT-AMATE-------GIIADPVSPI--ELSARAIDRGENM--EGSFSLERYSCEPPKDST--DDKEWVKAVNNVSAQLENQTNRVLNLELLETFGEAAWRRHIQDLQGLKLQLETLVSAKRRKADAINVQRKTHQESISPHILHYEASYNSALHHHLELRLANTQLEQQILRI 233
                 56899999997.7.4455*************.22222.......2333555556..8999999988887..689**********99988..89**********************************************************************************************************875 PP

>> PF08359.6  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.1   7.9e-06     0.054       4      64 ..     172     232 ..     169     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.9e-06
                 H---HHHHHHHHHCC--SHHHHHHHHHHHHHHHH---HHHHHHHHCTTS-SSHHHHHHHHH CS
   PF08359.6   4 klgqfvekikeeikekesaeeklkllvekhfsqlsadkelaivtqlelrqsnlelrlkine 64 
                 +l+++v+  +++ ++++  ++  +  ++ h+ + +a ++ a+   lelr +n++l ++i  
  MMETSP0890-20130614|5274_1 172 QLETLVSAKRRKADAINVQRKTHQESISPHILHYEASYNSALHHHLELRLANTQLEQQILR 232
                 57788998888888888888888899*******************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.65
# Mc/sec: 973.29
//
Query:       MMETSP0890-20130614|5272_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-22   79.2   0.1      1e-11   44.5   0.0    2.3  2  PF00481.16 Protein phosphatase 2C
  ------ inclusion threshold ------
      0.012   14.3   0.0      0.017   13.7   0.0    1.1  1  PF05782.6  Extracellular matrix protein 1 (ECM1)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.5e-15     1e-11      10     152 ..      14     165 ..       6     168 .. 0.76
   2 !   32.3   0.0   7.9e-12   5.4e-08     169     251 ..     346     427 ..     331     431 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.5e-15
                 CCCHHHHHHHHH----SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHH....HHHHHHHHTTXX....XXGGHCHHHHHH..HHCHHHHHHCCS.HTT---EEEEEEESSSE.......EEEEEE---EEEEEE..---EEEESS---STTSHHHHHHHH CS
  PF00481.16  10 gfrksmedahialknlekssgkssvaffavfdghggreaakyarehle....eilkerksflele...klekalrksfla.dtdeelksseantepsksGstavvalirgqk.......lyvAnvGDSravLcr..sdnakkeltedHkpsnedEreRIe 152
                 g++ ++ed+++ +    + +  ++ +ff vfdghgg eaa+++   l+    ++l+++  f++     + ek+l++++++ + d   ++ +   + ++ G+ta++ l+  ++         +A++GDS  +  +  +++ +  +t+ H+p++++E++ ++
  MMETSP0890-20130614|5272_1  14 GRKGKNEDRLAKKS--IRLRNGKKLQFFSVFDGHGGKEAAEKCVDELHvrvaDLLNSS--FSTILekdEEEKILKSAVAKaFWDIDDDLGS---QGITAGTTATTLLLLFNEdsnqpykAMIAWIGDSIGLCYDvvQGTRF-NMTTRHNPEQDSEMQKLQ 165
                 67778888887444..556778999***********************9654444444..4443345677778888888855555555533...57*******99877655558999*9*********8766543377777.9************99876 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 7.9e-12
                 BSBSB----HHHC---ST-TSB---EEE..EEEE-TT.--E.....EEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHHHHH CS
  PF00481.16 169 LavsRalGdfelkpkekeqlvsaePdvt..svkidee.def.....liLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdeaiar 251
                   vsR++Gd++  +     +v++e d      + +e+ d+      ++LasDGlwdvl+ q+ ++++  +  +   p++a+++l+d+a+++
  MMETSP0890-20130614|5272_1 346 TTVSRSIGDWDASR-----AVIPEADFVswNLPPTENtDHIqfyhrVLLASDGLWDVLP-QKRIEFILATTLD---PQDACDKLMDDAKKK 427
                 579**********9.....8888888884444445554432334448*********775.6667888777775...************986 PP

>> PF05782.6  Extracellular matrix protein 1 (ECM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.5e-06     0.017     316     387 ..     141     213 ..     123     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-06
   PF05782.6 316 ichlkrfrsvprnlpatdslqrellalirleaefqrccrqgnnhtctwkawedtldgycdrel.aikthhhsc 387
                 +++  rf    r  p  ds  ++l+a+ +l ++ qr  r     t + k   +tldg c  +  ai   + sc
  MMETSP0890-20130614|5272_1 141 VVQGTRFNMTTRHNPEQDSEMQKLQAIWKLRKKAQRSGRALLSTTSSQKKIFETLDGSCSGQTsAIGDRNLSC 213
                 556689*****************************************************86541555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1237.68
//
Query:       MMETSP0890-20130614|5276_1  [L=1095]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.41u 0.39s 00:00:01.79 Elapsed: 00:00:01.62
# Mc/sec: 1619.76
//
Query:       MMETSP0890-20130614|5282_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 194.70
//
Query:       MMETSP0890-20130614|5289_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.78    8.5   5.3       0.79    8.5   3.7    1.0  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit


Domain annotation for each model (and alignments):
>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.7   5.8e-05      0.79      23      94 ..       5      74 ..       1      80 [. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 5.8e-05
  PF03896.11 23 gavkklaasaqdltedeeaeddvvdedeedeaeveedekteaeeeedeeeagevkaspdadttilFvkgeed 94
                +++ ++ ++a  + +++++ d+++ +d+ de  v++d  +++e++ d  +++ +  spd  ++   +++++d
  MMETSP0890-20130614|5289_1  5 DSPDEPIVAAT-TEAKKDILDEQMIVDSSDEPIVADD-AASTEAKKDIRDEQMMADSPDEPIVAATTEAKKD 74
                55566666663.3344455699999*********999.7789999999988899999998776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.98
# Mc/sec: 198.07
//
Query:       MMETSP0890-20130614|5288_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-42  144.0   0.0    6.9e-42  143.5   0.0    1.2  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.051   13.7   0.0    1.9  1  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0     1e-45   6.9e-42       2     234 ..     303     546 ..     302     564 .. 0.92

  Alignments for each domain:
  == domain 1    score: 143.5 bits;  conditional E-value: 1e-45
                 TSEEEEESTT---HHHHHHHHHHHTCCET.TGGG-TGCCT-HHHSEETT-TCCGSGCCGCCCCCCHHGG-TTHHHHHCHCTSS.EEEE...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHH....TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--......HHHHHHHTCHHHHHC-CCCSSTCCH..........S-SSEE---TTGG CS
  PF00685.22   2 ddvlivtypKSGttwlqellslitsegdf.ekaeepalfnardrspfLelydlyfpnslkpqehlsyshvaekvvrlralesprllktHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslkllkepetpfeeffdlflegrvvcgsyfdhveewlk....lrkkgnvlflrYEdlkkdpakeikeiaeFlGip......lekivkhlsfenmksnpvsnkskls..........ekffrkgqvgdWk 234
                 +d+ ivt+pK Gttw+q+++ l+ ++gd+ ++  +p +   ++  p+Le +  ++p+   p       ++ +   +l   + +r++k+H p +l     + ++ K iy++Rn+kd++ S y + + l +++ +e+ ++ f+ lf++g v  gs+++h ++w      +++++ +l++++E lk++p k i +ia+F+Gi+      ++ +v+h+sf +mk++ +s ++++           +++fr+g vg+W+
  MMETSP0890-20130614|5288_1 303 SDIYIVTFPKAGTTWMQQIILLLLHNGDAtKVDPHPKI---QSQAPWLEACYCRTPRWGGPC------PYLDAHSTLPRHAGRRVFKSHAPEELAIFRNKLNRGKTIYVARNAKDTCCSLYSHCKTLPPYEYKES-IDHFVPLFCQGLVEHGSWRSHHLGWFNkaaaQENDNDILYIHFEFLKENPNKAITRIAQFIGIShpsdelIRAVVHHSSFAAMKQRTSSTSVSTLyqaststnfaTSRFRSGAVGKWH 546
                 699**************************888899999...9*********77777666666......556666677777778***********9989999999***********************99999999.9*************************9999999********************************************************98887799********************6 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.4e-06     0.051      21      71 ..      39      92 ..      18      95 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.4e-06
                ---EEE----TTTT..HHHHHHH-TT--SSEEE--.--EEESHHHHHHHHHHH- CS
   PF13417.1 21 glpyelvevtpgkk..rpellalnpkgkvPvLedd.gevltdSlvIieyLeerf 71
                ++++  v++   ++  +p++++++p+g +P+L++  g+ +++ +v+++ L e +
  MMETSP0890-20130614|5288_1 39 NIEFIRVDTARLQHelDPMIRQVTPLGELPALTTSrGDGYYGATVVLRALGEDY 92
                455555666666777899**************9877************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:00.85
# Mc/sec: 1660.53
//
Query:       MMETSP0890-20130614|5291_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-11   43.0   0.1    3.8e-09   36.2   0.0    2.2  2  PF00454.22 Phosphatidylinositol 3- and 4-kinase
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.17   10.9   0.0    1.2  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0029        20      35      70 ..       9      44 ..       3      54 .. 0.86
   2 !   36.2   0.0   5.6e-13   3.8e-09     131     219 ..      62     142 ..      50     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0029
                --------B--SSS----EE--TTEEEHHHHHCH-- CS
  PF00454.22 35 lrelaaYlviplasksglielvdsaltlaevprtdl 70
                l+ +a+Y v + +s++g ielv+    l ev  +d 
  MMETSP0890-20130614|5291_1  9 LISIATYGVCAFSSRVGCIELVQGVRALTEVKANDI 44
                5679********************999999988775 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 5.6e-13
                 HHHHH-------CCCEEE.E----EEE------------SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHH CS
  PF00454.22 131 vldyilgngDRhldNilvdkktgklvhIDfGlclpskheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdllt 219
                 v+ ++ g+ DRh dN l+  ++gk+ hIDfG+ l+      +++  f  t+++ +++      sk  + f + c++++  lr+++d+l 
  MMETSP0890-20130614|5291_1  62 VAAHVTGIRDRHSDNVLI-ADDGKCLHIDFGHVLD--DKVCLDTDFFATTPELRSAL-----GSKRWNEFCDACVDAFLGLRENADILS 142
                 6677889***********.****************..99999999999999******.....67*********************9985 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05      0.17      61     145 ..      12      93 ..       2     120 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
                 --EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------ CS
  PF00069.20  61 vkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGla 145
                 + +++v+   ++ + ++e+v+g +  + +k++  +s++++ +++ + + g    H  gi  rD  ++N+L+ ++g++  +DFG+ 
  MMETSP0890-20130614|5291_1  12 IATYGVCA-FSSRVGCIELVQGVRALTEVKANDIFSTQQLNRLVATAAGGYVAAHVTGI--RDRHSDNVLIADDGKCLHIDFGHV 93 
                 55666664.445556899999999999999*****************************..999*******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.61
# Mc/sec: 1602.81
//
Query:       MMETSP0890-20130614|5286_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-05   22.5  19.0     0.0053   16.4   0.9    3.3  3  PF13229.1 Right handed beta helix region
    0.00036   20.6   5.2      0.038   14.0   0.1    2.9  2  PF12708.2 Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.9   7.7e-07    0.0053      67     109 ..     169     211 ..     146     217 .. 0.48
   2 ?   -1.9   0.0      0.33   2.3e+03      43      60 ..     335     347 ..     301     366 .. 0.49
   3 !   11.0   5.8   3.6e-05      0.24      58     145 ..     462     578 ..     446     588 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.7e-07
   PF13229.1  67 s.ggiklsgssnntienntitnnggaGiylnynssnntitnNti 109
                 s +gi+ + ++++ i+n++i + +++Gi+ln  +++++i  ++i
  MMETSP0890-20130614|5286_1 169 ShSGIHGNFNTGVEIRNVHIRDFETTGIQLNE-GKHVIIDECNI 211
                 23444444444444444444444444444443.44444444443 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.33
   PF13229.1  43 nggegiyiqns....snntisg 60 
                           s    s +ti++
  MMETSP0890-20130614|5286_1 335 A---------SdltvSATTIHH 347
                 1.........111122233333 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 3.6e-05
   PF13229.1  58 isgnyienns..ggiklsgssnntienntitnngga.......................Giylny.....nssnntitnNtisnnggsGiyvegsssgnititnntisnnggaGiyli 145
                  +++  ++n+  +gi ++ s+++++e++ i+n +++                       Gi ++       s+ ++i +   +  +++Gi v ++  +n+ i++  i +n  +Gi   
  MMETSP0890-20130614|5286_1 462 NEDCMAHSNKgvIGIRVEFSADVLLEDVSIHNLTNNgtrtnfwpdscagksnylgsdarGIVTSVstairTSNTVEIADIYSDAGSAYGIEVRDGV-SNTHIHDDLIISNVLSGIDTE 578
                 556667777788999999999999999999999888777777777777777777777777755425777666668888888888889999999999.888899999999999999665 PP

>> PF12708.2  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   5.5e-06     0.038      33     154 ..      49     204 ..      41     212 .. 0.71
   2 !    6.9   0.9   0.00083       5.6      94     217 ..     402     558 ..     340     589 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.5e-06
   PF12708.2  33 gatVyfPaGtYlisspiiipsnttlvGdggnvpvlklsdaassfvstegngvidagdpyseg..........................................gi.tnnfyrqirnividgtgialdntasgihwqvaqntsidnvkainigkdgiefntgtae 154
                 g  ++ ++GtY++++ i     t     + +  ++    aa+ +    g +   a+++   +                                          +     + ++ +n++i++   +l ++ sgih +  + ++i+nv+++++   gi++n+g+ +
  MMETSP0890-20130614|5286_1  49 GTLIIASPGTYVVEEDIVFAPKTDKMFPPADSNIYS---AAAGYA--LGFFAAIAVTA---DdvtidlngheirssvefslrqrffsiielantpflpgtgppqFAkLEEELISANNFKIMNGVLGL-SSHSGIHGNFNTGVEIRNVHIRDFETTGIQLNEGKHV 204
                 667778899999999999999998888888888877...555554..23332222221...124455677777778888888888888777777776666666533333344669999999999999.5569******************999999999876654 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00083
   PF12708.2  94 g.....gi.tnnfyrqirnividgtgialdntasgihwqv...aqntsidnvkainigkdgiefntgtaetiegstqvrgifiengs....ggivvenlvfnggddGatlgs............................qqltirnltfentcatGigisggst 217
                        + + n++   +ni+    gi++   ++ ++wq+   ++  ++d++     ++ g+ f+ +++  + +++ v gi +e ++    + + + nl+ ng +    +                              + + i++++ +   a Gi++ +g  
  MMETSP0890-20130614|5286_1 402 RiknyyLEfQANLNLDDENIFERFGGINV--PEAVLQWQKgkqGKYKTLDKL----LQNGGFSFTCNEDCMAHSNKGVIGIRVEFSAdvllEDVSIHNLTNNGTRTN--FWPdscagksnylgsdargivtsvstairtsNTVEIADIYSDAGSAYGIEVRDGVS 558
                 13444444566666666666666666666..357888888666666666666....555688888888888888888888888885544444444445544444444..23311222222333344444444444444444555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.84
# Mc/sec: 1771.59
//
Query:       MMETSP0890-20130614|5294_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-15   54.0   0.1    3.2e-14   52.3   0.0    1.8  2  PF09409.5  PUB domain
    5.7e-06   26.2   0.0    1.3e-05   25.1   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    1.7e-05   24.4   0.0    3.5e-05   23.4   0.0    1.5  1  PF13180.1  PDZ domain
  ------ inclusion threshold ------
        7.4    6.8   9.9        2.3    8.5   4.1    2.1  3  PF11716.3  Mycothiol maleylpyruvate isomerase N-terminal domain


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55   1.9e+03       2      15 ..     115     128 ..     114     128 .. 0.85
   2 !   52.3   0.0   9.4e-18   3.2e-14       4      70 ..     277     344 ..     274     360 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.55
   PF09409.5   2 qkeefkkaleiLlk 15 
                 ++++fkk+++iL k
  MMETSP0890-20130614|5294_1 115 EIDTFKKCMDILKK 128
                 5799*******986 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 9.4e-18
   PF09409.5   4 eefkkaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeee..eeflvlp 70 
                 e+ + ++ +Llkll+N+l+  ++ek+Rr+rl N  ++ kil +eg++e+L ++GF+ + +  e+ l+lp
  MMETSP0890-20130614|5294_1 277 EAQEACVATLLKLLDNVLNK-TDEKFRRVRLANANIQAKILEIEGGLEILIAAGFQLQPDgdETILQLP 344
                 66788*************98.99***********************************99555555555 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.8e-09   1.3e-05       8      60 ..      70     119 ..      63     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.8e-09
                 TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTS CS
  PF00595.19   8 krgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenv 60 
                 + g lG+++++g+++      v+ v + g ae++g+++GD+++ +Ng+ + ++
  MMETSP0890-20130614|5294_1  70 EAGTLGMTVSRGEKN---LPQVTTVHREGVAEKAGICKGDIVTTLNGEEIDTF 119
                 5688**********7...79****************************99987 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     1e-08   3.5e-05       2      57 ..      73     127 ..      72     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1e-08
   PF13180.1   2 diGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslll 57 
                  +G +vs  e+ +   v++V  ++ a+kag+ +GDi++ ++g+++++ ++    l 
  MMETSP0890-20130614|5294_1  73 TLGMTVSRGEK-NLPQVTTVHREGVAEKAGICKGDIVTTLNGEEIDTFKKCMDILK 127
                 57888888886.88899****************************99877766665 PP

>> PF11716.3  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.97   3.3e+03      36      68 ..      30      62 ..      29      78 .. 0.73
   2 ?    8.5   4.1   0.00068       2.3      47     120 ..     154     231 ..     138     238 .. 0.71
   3 ?   -3.2   0.0       2.7   9.3e+03      73      81 ..     263     271 ..     241     299 .. 0.54

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.97
                HHHHHHHHHHHHHHHH..HH------.SSS.-H CS
   PF11716.3 36 aHlarsaralaaalageaaesglardaaaplvt 68
                +H+  s +  +a++ g+++  ++ +++  +++t
  MMETSP0890-20130614|5294_1 30 GHVLGSKSDNSATASGSGHKLSESTTEPKAQST 62
                699999999999999998888888776555544 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00068
                 HHHHH..HH------.SSS.-HHH.........HHHHH----S-HHHHHHHHHHHHHHHHHHHHT--TCGGG-EE.E-----EE CS
   PF11716.3  47 aalageaaesglardaaaplvtaa.........aeavdlaaslapeallaafraavtrlaaalaalppdaradtl.giplgprs 120
                 aal++++a+ ++++ +       +             +++a l+ ++ +aa++aa++r a++ ++l  d   + l g+ ++ +s
  MMETSP0890-20130614|5294_1 154 AALERDGAWNRRVASRP------QggklantrnPVSSTEEANLSNPETRAAWEAAAQRHAEQTRELGYDPYKPLLtGTSASSQS 231
                 23333334443333322......02223335559********************************999999999888887777 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 2.7
                 HHH----S- CS
   PF11716.3  73 avdlaasla 81 
                 +v+l+a ++
  MMETSP0890-20130614|5294_1 263 QVALQALAS 271
                 222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1217.87
//
Query:       MMETSP0890-20130614|5296_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-05   24.3   0.0    6.3e-05   22.6   0.0    1.9  2  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
        0.1   11.8   0.0        0.2   10.9   0.0    1.4  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   9.1e-09   6.3e-05      10      98 ..     145     262 ..     139     303 .. 0.86
   2 ?   -2.6   0.0      0.47   3.2e+03     221     252 ..     386     417 ..     380     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 9.1e-09
   PF03567.9  10 kivfcrvpKvasttfkrvlvrlig...k.kctcnrrsinetwlfsrrstgwscglfadltelsstei.pkrldk...........................yfkfifvRdPfeRllSayrn 98 
                 ++ f +  K+++t+f ++   + g   + k++c + +  +   +  r   w++ + a++ + + + + ++   +                           ++  ++vRdP++Rl+Say++
  MMETSP0890-20130614|5296_1 145 VLWFEHLSKAGGTSFCKFARQNVGfhrTpKYYCMPSDGAKIQGTDGRVGRWQEEKIAEYLRRTGHLVlAN---EwdafpadalihklpnlptppdnsppiePVLATVVRDPLDRLVSAYKF 262
                 6778899*****************9996699998888777776677777888888888866666665444...155589****************************************97 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.47
   PF03567.9 221 strasevevdlseklrqrleelYelDfelFey 252
                 ++ +s  ++dl+++  + l+  +  D++lF++
  MMETSP0890-20130614|5296_1 386 AKQNSAAQSDLQPTHYHSLRLRNIPDLLLFDF 417
                 566777888999999**************997 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.9e-05       0.2     108     135 ..     247     274 ..     245     314 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.9e-05
                 EEE--HHHHHHHHHHHHHHCTCSTTT-- CS
  PF00685.22 108 ylvRnpkdvavSryhfsrslkllkepet 135
                 ++vR+p d++vS y f+  ++  ++ ++
  MMETSP0890-20130614|5296_1 247 TVVRDPLDRLVSAYKFWGITHGGPKAKD 274
                 69***************99884444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.94
# Mc/sec: 1172.69
//
Query:       MMETSP0890-20130614|5297_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.9   0.3         10    6.4   0.1    4.4  6  PF13516.1 Leucine Rich repeat
      0.063   12.9   0.2         20    4.9   0.0    3.1  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0015        10       2      24 .]     137     160 ..     137     160 .. 0.87
   2 ?   -2.9   0.0       1.5     1e+04       4      16 ..     166     179 ..     165     182 .. 0.74
   3 ?   -0.8   0.0      0.31   2.1e+03       1      11 [.     189     199 ..     189     203 .. 0.84
   4 ?   -3.4   0.0         2   1.4e+04       9      21 ..     259     271 ..     257     271 .. 0.67
   5 ?   -1.7   0.0      0.64   4.4e+03       2      23 ..     302     324 ..     302     325 .. 0.76
   6 ?    0.9   0.0     0.092   6.3e+02       1      17 [.     327     343 ..     327     348 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0015
   PF13516.1   2 knLtsLdLsnNq.igdeGlsaLan 24 
                 + L s+dLs++  i+d+ +s La+
  MMETSP0890-20130614|5297_1 137 PRLISIDLSSCLlIDDNAVSQLAK 160
                 57999******8799999999986 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.5
   PF13516.1   4 LtsLdLsnNq.igd 16 
                 L+ L L ++  i++
  MMETSP0890-20130614|5297_1 166 LQRLGLRDCRkITN 179
                 77888999964765 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.31
   PF13516.1   1 lknLtsLdLsn 11 
                 l+ L +Ld+s+
  MMETSP0890-20130614|5297_1 189 LPRLIDLDISG 199
                 68899****95 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 2
   PF13516.1   9 LsnNqigdeGlsa 21 
                 +s+ +++d++l+a
  MMETSP0890-20130614|5297_1 259 ISGLGVDDDFLMA 271
                 5666778888765 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.64
   PF13516.1   2 knLtsLdLsnNq.igdeGlsaLa 23 
                 ++L +L+++ ++ ++d  l aLa
  MMETSP0890-20130614|5297_1 302 PHLIDLRVQWTPsFDDFALDALA 324
                 68899999999867776677876 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.092
   PF13516.1   1 lknLtsLdLsnNqigde 17 
                 ++ Lt Ld  +++i+ +
  MMETSP0890-20130614|5297_1 327 CPRLTALDATGTPITID 343
                 99******999999866 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0029        20       3      34 ..     166     199 ..     164     210 .. 0.83
   2 ?    2.7   0.0     0.014        94      19      61 .]     296     340 ..     288     340 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0029
   PF13855.1   3 LkeLdLsnN.rlk.vipdgaFkglsnLkvLdLsg 34 
                 L++L L+++ +++ +i d + ++l++L  Ld+sg
  MMETSP0890-20130614|5297_1 166 LQRLGLRDCrKITnTIFDLVIQDLPRLIDLDISG 199
                 7888999888888778889999999999999994 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.014
   PF13855.1  19 gaFkglsnLkvLdLs.gnnlksispe.afkgLpsLreLnLsgNrl 61 
                  +F+ +++L  L  +   +   +  + + +++p+L+ L+  g+++
  MMETSP0890-20130614|5297_1 296 KTFQAWPHLIDLRVQwTPSFDDFALDaLAAHCPRLTALDATGTPI 340
                 577777777777777666665444431478999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:01.11
# Mc/sec: 841.96
//
Query:       MMETSP0890-20130614|5298_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-35  122.7   1.5    6.8e-35  120.7   1.0    1.9  1  PF00091.20 Tubulin/FtsZ family, GTPase domain
    8.3e-30  102.6   0.6    8.3e-30  102.6   0.4    2.0  2  PF12327.3  FtsZ family, C-terminal domain
  ------ inclusion threshold ------
       0.43    9.9   3.5       0.29   10.5   0.4    2.2  2  PF02863.13 Arginine repressor, C-terminal domain
        5.5    5.7   7.3        1.4    7.6   1.8    2.0  2  PF13809.1  Tubulin like


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   1.0     2e-38   6.8e-35       2     213 ..      16     184 ..      15     187 .. 0.97

  Alignments for each domain:
  == domain 1    score: 120.7 bits;  conditional E-value: 2e-38
                 EEEE-------HHHHHHHH.............................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--TT---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HH CS
  PF00091.20   2 ivvvgvGqcGnqigdelweqlalehsiaaddkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPsalevvvqpynailtlkeliehaDavlvldNdallaicgkslkiekea 213
                 i+vvgvG++G +++++++e                             ++++++++ +++t++++l+++ a++   + +++++++g  gag+ +avG+      aaee+  ei  ++    g++++++++++gGgTGSG+a+ ++ ++k++  +al+v++v+ P+ +e+  ++ +a++++++l+e +D+++v++Nd+ll+i+ + +++  +a
  MMETSP0890-20130614|5298_1  16 IKVVGVGGGGGNAVNRMVE-----------------------------TAIEGVEFWALNTDAQALSRSLAPNT--MNIGRETTRGL-GAGGAPAVGEA-----AAEESRAEIAAAM---AGADMVFVTAGMGGGTGSGAAPIVAGIAKDM--GALTVGVVTKPFGFEGRKRQTQAMEAIRNLQEAVDTLIVVSNDRLLEIVPEGTPVS-NA 184
                 89*****************.............................88999***************999999..***********.***********.....*************...*******************************..************************************************98887777.55 PP

>> PF12327.3  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.3   4.4e+03       8      23 ..      80      96 ..      73     109 .. 0.57
   2 !  102.6   0.4   2.4e-33   8.3e-30       1      95 []     224     318 ..     224     318 .. 0.99

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.3
                --B--.--HHHHHHHHH CS
   PF12327.3  8 Geasg.edraeeaaeaa 23
                Gea + e+rae aa  a
  MMETSP0890-20130614|5298_1 80 GEAAAeESRAEIAAAMA 96
                44433244555444433 PP

  == domain 2    score: 102.6 bits;  conditional E-value: 2.4e-33
                 --BB-----B----HHHHHHHHHHTSGGGT---------EEEEEE--------TTT---HHHHHS-TTS--B---EE-TT--S-BEEEEEB---- CS
   PF12327.3   1 GvammgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltleEveevaeeireevdeeanvivGasideeledeirvtvvatGie 95 
                 G+a+mg+G+ +g+ ra eaa aa ++pLLd  ++ Ak+v++ni gg+dl+l+E++e+a+ ++++v+ +anvi+Gasid+++   + vtv+atG++
  MMETSP0890-20130614|5298_1 224 GTALMGIGQGKGKGRAVEAAIAATACPLLDSPIRHAKAVVFNIVGGPDLSLQEIQEAADIVYDTVERDANVIFGASIDDNMGSDVSVTVLATGFK 318
                 89*******************************************************************************************96 PP

>> PF02863.13  Arginine repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   8.3e-05      0.29      23      54 ..      74     105 ..      70     108 .. 0.94
   2 ?   -2.9   0.1       1.3   4.5e+03      20      31 ..     111     122 ..     111     127 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.3e-05
  PF02863.13  23 GnAqlvaslldslkleeIlGtiAGdDtilvic 54 
                 G A++v+++  ++   eI++ +AG D ++v++
  MMETSP0890-20130614|5298_1  74 GGAPAVGEAAAEESRAEIAAAMAGADMVFVTA 105
                 99****************************85 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.3
  PF02863.13  20 TlpGnAqlvasl 31 
                 T +G+A++va +
  MMETSP0890-20130614|5298_1 111 TGSGAAPIVAGI 122
                 678999999975 PP

>> PF13809.1  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1     0.093   3.2e+02       2      43 ..      18      50 ..      18      71 .. 0.67
   2 ?    7.6   1.8    0.0004       1.4     149     168 ..     100     119 ..      72     158 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.093
   PF13809.1  2 vIGlGGtGsevlarlrrkieeelgglekepiveFlavDtdks 43
                v+G+GG G++++ r+ ++           + veF a+ td +
  MMETSP0890-20130614|5298_1 18 VVGVGGGGGNAVNRMVETAI---------EGVEFWALNTDAQ 50
                79999999988766544333.........4666777776666 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0004
   PF13809.1 149 nvfvvgslsGGTGSGillDl 168
                 +vfv++++ GGTGSG    +
  MMETSP0890-20130614|5298_1 100 MVFVTAGMGGGTGSGAAPIV 119
                 7**************76444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:00.60
# Mc/sec: 1557.63
//
Query:       MMETSP0890-20130614|5308_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.082   12.9   0.0       0.17   11.9   0.0    1.5  1  PF01713.16 Smr domain


Domain annotation for each model (and alignments):
>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.2e-05      0.17       2      55 ..      68     125 ..      67     138 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
                 E-----HHHHHHHHHHHHHHHHHHHH-EEEE..E----....---..HHHHHHHHHHT CS
  PF01713.16   2 DLHgltveeAlealeefldrarskglrtvli..itGkGshseggv..LkkavkewLde 55 
                 DL  l    A+++++  +++  s+   +v i  itG G   + g   L++++ e+L+ 
  MMETSP0890-20130614|5308_1  68 DLTSLPFPLARSLVRLTINKHLSSSTPPVDIifITGVGARRTPGHtsLRSHLLEYLQL 125
                 7888888889999999999999999988886337****777777669*********43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       869  (0.0635606); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 1032.61
//
Query:       MMETSP0890-20130614|5306_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 364.82
//
Query:       MMETSP0890-20130614|5305_1  [L=1563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-72  241.1   0.0    2.3e-71  239.9   0.0    1.7  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    1.6e-23   83.4   0.2    3.1e-13   49.6   0.0    3.6  3  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
    8.1e-14   51.7   0.1    4.6e-13   49.3   0.1    2.5  1  PF06337.7  DUSP domain
  ------ inclusion threshold ------
      0.043   13.6   0.1       0.28   11.0   0.0    2.4  3  PF02820.13 mbt repeat
      0.059   12.5   0.0       0.17   11.0   0.0    1.8  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.9   0.0   8.4e-75   2.3e-71       2     272 .]     683    1544 ..     682    1544 .. 0.97

  Alignments for each domain:
  == domain 1    score: 239.9 bits;  conditional E-value: 8.4e-75
                  ----------THHHHHHHHHHHTSHHHHHHHHTTHCCH....H-TTHHTTTHHHHHHHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-.......................-SCHHHHC-EEEEEEEEETTCEEE.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SE.EE-GGGBSCHHH..--BTTSSCEEEEEEEEEE---TT---EEEEEE....SS-TT-.....................EEEEETTEEEEE-HHHHTTCEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxx.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00443.24    2 gvtGleNlGntCYmnsvlQcLvsipelrdyllryeervaeineeneleeeaqlaraladlfkklvenssekkavsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqkaeds...................ndslitdlfkgqlksrlkclecknv.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kvklkrlPeiLiihlkRfkyseerssnkKlnekvefple.Ldlssyvneekk..eeseskpkkYeLvavvvHsGslssGHYvayvk....nneknk.....................WlkfdDetvtevkeeevlkesaYvlfY 272 
                  g tGl+NlGntCY+ns+lQcL+++p lr y+l+   +  e+n++n+l+ ++++++++a+++k+l+  s++ ++++P++fk+tl+k ++qf+g +Q+D++Efl+ +Ld lhed+nr+ +k++  +++ ++                    n s+i+dlf+gql s+  c  c+++                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ++  ++lP+iL+ih+kRf ys +   ++K+n++v+fpl+ Ld+s +v  + +  +  ++  ++Y+L++v++H G++ +GHY++yv+         +                     Wl++dD+ v+ev  +++++e+aYvlfY
  MMETSP0890-20130614|5305_1  683 GSTGLVNLGNTCYINSALQCLSHTPLLRAYILSEGYSG-EVNRTNPLGTQGRMVEEFASILKQLW--SEQYRYIAPNKFKRTLAKLKPQFAGNDQHDSQEFLAEMLDMLHEDVNRVVEKPYVVEPDDDEVdkltsidaareawdryllrNRSVIVDLFQGQLMSERTCAVCSKRslkfetfmylsvplpaprdrlvklvlltraegskldlsrlevptnrpastaisvdmppdngaisdktteinaskiekrsswsamlskpieknetseedksialngallqpklvvprvvkyvfeiprlgtvaelkkaiakrsgiaasdlvigdvfrhrfiklwhdteplarmadedflvayestpepppdapedtfpntfdalrvgsrvdaldlrghwfvgmvvainesgqrrvsfdhfaskwdewygpndfstklappytyskrkarimeiqvihrrlrtkptktetqqknsidydddvkqgdnevctkeeskelapctaetensekmntvsadenekvrrqptiprrpsnpngvelfgtpfvvriesdmqveklyskimnqaqafvnpkwrnslttlttekagpkrpfeirlaalaqptlvrvvnniktsaeekketveaqslssqehfssapdifysgrkvlvtdildeargavtldwldptayddcfeaseaardpscnehlddegrlrqnngqnvslatcldafskeetlsddnfwfcpkckvnrhaisRILPWKLPDILVIHMKRFLYSANW--REKINTRVDFPLTsLDMSTWVHPDASgcDVHHHGAMTYDLFGVINHLGGMTGGHYTSYVRavpcT----RdgveevassfpteedglvdyrWLHVDDDLVEEVGPQQIVTEAAYVLFY 1544
                  679********************************555.9************************5..9999***************************************************99999944568999***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************999***************887775..89*******************977667778899999************************76541....2335667888888889999999*************************** PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   8.5e-10   2.3e-06       2     160 ..     686     871 ..     685     952 .. 0.83
   2 ?    1.2   0.7     0.065   1.8e+02      96     205 ..    1127    1310 ..    1115    1318 .. 0.55
   3 !   49.6   0.0   1.2e-16   3.1e-13     158     295 .]    1367    1526 ..    1335    1526 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 8.5e-10
   PF13423.1   2 GlennlnncYlnaLLqllfftldlfeailkhs...e......cskencllceLgflfnmLdsstkgtpcqasnllralstipeaaalgeqqdvqeanrFileqlslelltlkvdifh...................ererdkseaesslselfgtklisqnrciscqaekvkeesllnlelpyppse 160
                 Gl n +n+cY+n+ Lq l  t+ l+  il +    e        ++ +++ e + +++ L  s +       ++ r+l++ + ++a   q d qe+ + +l+ l+ +++  +++ +                    + +r    + s +++lf+ +l s+ +c  c++ + k e++++l++p+p+  
  MMETSP0890-20130614|5305_1 686 GLVNLGNTCYINSALQCLSHTPLLRAYILSEGysgEvnrtnpLGTQGRMVEEFASILKQLW-SEQYRYIAPNKFKRTLAKLKPQFAGNDQHDSQEFLAEMLDMLHEDVNRVVEKPYVvepdddevdkltsidaareAWDRYLLRNRSVIVDLFQGQLMSERTCAVCSKRSLKFETFMYLSVPLPAPR 871
                 9****************************99954324444443344555555555555555.566666666788888888888899999**********************9887779999************9988889999999*************************************9843 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.065
   PF13423.1   96 lslelltlkvdifh...............ererdkseaesslselfgtklisqnrc.iscqaekvkeesllnlelpyppsek.......................................................giklenileeslnseknkeikcesckkkss......................aevakkftslPpiL 205 
                  +++ l+t+  +++                 +e ++ e++++l  +++ ++++++++ + + +e++k+ ++ +    +++ +                                                         i+l+ + + +                                         ++++ +f+s P+i+
  MMETSP0890-20130614|5305_1 1127 IHRRLRTKPTKTETqqknsidydddvkqgDNEVCTKEESKELAPCTA-ETENSEKMnTVSADENEKVRRQPTIPRRPSNPNGvelfgtpfvvriesdmqveklyskimnqaqafvnpkwrnslttlttekagpkrpfEIRLAALAQPT------------------LvrvvnniktsaeekketveaqsLSSQEHFSSAPDIF 1310
                  55555555444433555666667777777788899999999999887.5555555523444455666666666555555333455555555555554444444444444444444444444444444444555444434444333333..................0333333333333333333444488888888888885 PP

  == domain 3    score: 49.6 bits;  conditional E-value: 1.2e-16
   PF13423.1  158 psekgiklenileeslnseknke...ikcesckkkssaevakkftslPpiLgIclkrynekefgakrlntkvdiple.lrlphfiqddeqenekplsgefkyeLqavVchigdsltsghlvSlirvae.sek..................sqWylFnDfrv 295 
                  ++ ++++l+ +l+ ++++e+      ++c +ck    a +++   +lP+iL+I++kr  +  ++  + nt+vd+pl+ l+++  + +d    +   +g + y L +v+ h g  +t gh+ S++r  + +++                   +W   +D +v
  MMETSP0890-20130614|5305_1 1367 NNGQNVSLATCLDAFSKEETLSDdnfWFCPKCKVNRHAISRILPWKLPDILVIHMKRFLYSANWREKINTRVDFPLTsLDMSTWVHPDASGCDVHHHGAMTYDLFGVINHLGG-MTGGHYTSYVRAVPcTRDgveevassfpteedglvdYRWLHVDDDLV 1526
                  47889************99998899***************************************************99***********99999*******************.***********988755566666666666655555555999998776 PP

>> PF06337.7  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   1.7e-16   4.6e-13       1      98 [.     153     256 ..     153     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.7e-16
   PF06337.7   1 gqkwyliskkWleqwkdyvkydekeedsekss..........................aqkpGpIdnssLveteeekakstllengrlkpqlqegkdyelvpeevweaLyewYgggpeiprkvi 98 
                 g+++++i ++W+++w +yv+ +++  +    +                          +q+p++Idns  ++++             lk      + + l+p +vwe+L++wYgggp++pr ++
  MMETSP0890-20130614|5305_1 153 GDTVFAIDSDWWQRWAKYVQLSSPLPS----AiiqlqvdtgnnnnkynctsaeyssssQQRPDEIDNSLVIKKDG-----------ALK-----ADAFLLLPRSVWELLSRWYGGGPALPRTIV 256
                 789******************987743....23446777788888888888888888888888888888887775...........666.....456************************875 PP

>> PF02820.13  mbt repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.28      25      57 ..     583     615 ..     580     620 .. 0.90
   2 ?   -3.3   0.0       2.8   7.7e+03      28      42 ..    1085    1099 ..    1071    1118 .. 0.64
   3 ?   -3.6   0.0       3.6   9.8e+03      35      62 ..    1154    1181 ..    1146    1183 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0001
                 -EEEEEE----CCG-EEEETT-TTEE----TTT CS
  PF02820.13  25 erlrlrldgydsendfwvdvdSpdIfPvGwcek 57 
                 +r+r+r+d ++++ d w+dv S+ + P+G+  +
  MMETSP0890-20130614|5305_1 583 RRVRVRFDHFHPKWDEWYDVSSSGLAPLGTRAN 615
                 589**************************8655 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.8
                  EEEE----CCG-EEE CS
  PF02820.13   28 rlrldgydsendfwv 42  
                  r+++d + s+ d w+
  MMETSP0890-20130614|5305_1 1085 RVSFDHFASKWDEWY 1099
                  677777777777776 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3.6
                  -CCG-EEEETT-TTEE----TTT----E CS
  PF02820.13   35 dsendfwvdvdSpdIfPvGwceknghkl 62  
                  + +n++  + +S+++ P+   ++n++k+
  MMETSP0890-20130614|5305_1 1154 QGDNEVCTKEESKELAPCTAETENSEKM 1181
                  3445666677799999998877777765 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.2e-05      0.17       7      35 ..     972    1000 ..     962    1003 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.2e-05
                  EEEEEECTTSBHHHHHHHHHHHHTS-GGG CS
  PF00240.18    7 titlevepsdtvselKekieekegipvdq 35  
                  ++++e+++  tv+elK++i+++ gi+++ 
  MMETSP0890-20130614|5305_1  972 KYVFEIPRLGTVAELKKAIAKRSGIAASD 1000
                  5899*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1563 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.07u 0.36s 00:00:02.42 Elapsed: 00:00:01.95
# Mc/sec: 1920.77
//
Query:       MMETSP0890-20130614|5311_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   19.7   0.1     0.0013   18.7   0.1    1.5  1  PF10551.4 MULE transposase domain


Domain annotation for each model (and alignments):
>> PF10551.4  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   9.6e-08    0.0013      16      92 ..     459     549 ..     443     550 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.6e-08
   PF10551.4  16 vlvgvdeedegv.plafalvedesaeswtwfle.............tlkkalne.....k.pvvvitDgdkalakAikevfpdarhrlClwHilrnv 92 
                 +++g +  ++ + +l + ++ +e+ + ++ +l+             +              p++v++D+   ++ A+++ +  +r + C +H ++ v
  MMETSP0890-20130614|5311_1 459 IVTGNHDLRQHFhLLSITVAWTENMDIYSVVLQttwragvvvsrefG------LlrvdlSfPTYVMSDNADEIQGAVQNAWYLTRLLNCHFHHMKSV 549
                 5778888888888899*****************96666665555553......05444478********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.42s 00:00:01.53 Elapsed: 00:00:01.37
# Mc/sec: 1359.10
//
Query:       MMETSP0890-20130614|5313_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-13   47.6   0.1    3.2e-12   45.9   0.0    1.9  3  PF00085.15 Thioredoxin
    8.9e-08   32.6   0.0      0.005   17.3   0.0    2.6  2  PF12681.2  Glyoxalase-like domain
      9e-06   25.6   0.0     0.0037   17.2   0.0    2.6  2  PF13905.1  Thioredoxin-like
    0.00025   20.9   0.0      0.098   12.5   0.0    2.6  2  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
     0.0074   16.3   0.0       0.64   10.1   0.0    2.6  1  PF13098.1  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.044   13.6   0.0    1.7  2  PF13899.1  Thioredoxin-like
      0.074   12.9   0.0       0.15   11.9   0.0    1.4  1  PF00462.19 Glutaredoxin


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   4.4e+03      24      31 ..     139     146 ..     121     147 .. 0.64
   2 ?   -3.1   0.0       2.8   5.5e+03      33      46 ..     195     208 ..     193     214 .. 0.78
   3 !   45.9   0.0   1.7e-15   3.2e-12      14     103 ..     300     384 ..     289     385 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.3
                 EEE-TT-- CS
  PF00085.15  24 efyApwCG 31 
                 +  A wCG
  MMETSP0890-20130614|5313_1 139 KTEAYWCG 146
                 55688998 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHH CS
  PF00085.15  33 CkalaPeyeklaee 46 
                 C +++P ye+++ +
  MMETSP0890-20130614|5313_1 195 CPQVEPFYEAAKAS 208
                 99999*99998765 PP

  == domain 3    score: 45.9 bits;  conditional E-value: 1.7e-15
                 HHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEE..EE---.-HHHHHHHHHH CS
  PF00085.15  14 vaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkve..evegarekeklvaflkk 103
                 +++s+kl l++f A+wC  Ck+l P ++++++ l+       +dvde + las+++v+++P ++ ++     +  +++g+ +++++ af++k
  MMETSP0890-20130614|5313_1 300 LSASSKLALLDFGASWCKNCKKLLPFLHTISTPLA------TIDVDEAEALASKFQVSAVPHFIGLNPKTGETlfSYVGS-SETEINAFIQK 384
                 45569*************************98877......9*********************9886544444459***9.99999999986 PP

>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.6e-05      0.13       5      33 ..       6      36 ..       3      92 .. 0.77
   2 !   17.3   0.0   2.5e-06     0.005       2     108 .]     133     244 ..     132     244 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.6e-05
   PF12681.2  5 dleaaraFYeklLGfevae..eegdfvtlsl 33
                +l+++++F+e+++Gf+v    e++++++ ++
  MMETSP0890-20130614|5313_1  6 NLKKSLRFFEQVFGFRVLRheEFESGCEATC 36
                899**************99665556666655 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.5e-06
   PF12681.2   2 pvsdleaaraFYeklLGfevae..eegdfvtlslglalgsgvrellgldepeapggggvhlafevedldalvarlkaaG.akvlgeped..epwggr..efyvrDPdGnlielv 108
                 + +dl++++a++  +LG +     +   +  l  g   +++   ++    + ++++++ ++a +++ ++ +++++ka+G +++ + p++  +p+++   +  ++DPd + i++v
  MMETSP0890-20130614|5313_1 133 NSTDLKKTEAYWCGVLGATKFKvpPGSPEDALAIGWK-EDQCYLVFKT-GEVDHAEASGRIANACPQVEPFYEAAKASGqGEIMNTPITlpTPGKADvvVTILADPDKYEICFV 244
                 6789************987666553334445555544.3344444443.35667889999999*************************955444443335556*********96 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0037       2      27 ..     305     330 ..     303     337 .. 0.89
   2 !    6.1   0.0    0.0058        11      67      94 ..     336     364 ..     330     366 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.9e-06
   PF13905.1   2 kivllyfaaswcppckaftpelkely 27 
                 k+ ll+f+aswc++ck+ +p l+ + 
  MMETSP0890-20130614|5313_1 305 KLALLDFGASWCKNCKKLLPFLHTIS 330
                 8899******************9876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0058
   PF13905.1  67 fndkrrnklkklykvkaiPtlvvld.kdg 94 
                 ++ ++ ++l+++++v+a+P+++ l+ k g
  MMETSP0890-20130614|5313_1 336 IDVDEAEALASKFQVSAVPHFIGLNpKTG 364
                 5667889***************9995555 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     5e-05     0.098      10      34 ..       5      37 ..       3      69 .. 0.81
   2 !    5.9   0.0    0.0055        11       5      32 ..     130     157 ..     126     243 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-05
                S-HHHHHHHHHHHH--EEEEEEEE........S CS
  PF00903.20 10 gdleksldFYtkvLGfklvkktdn........t 34
                g+l+ksl+F+++v+Gf++++ +++        +
  MMETSP0890-20130614|5313_1  5 GNLKKSLRFFEQVFGFRVLRHEEFesgceatcN 37
                6899***************99996555555443 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0055
                 EEEEES-HHHHHHHHHHHH--EEEEEEE CS
  PF00903.20   5 valavgdleksldFYtkvLGfklvkktd 32 
                 v+l+ +dl+k+ +++++vLG++ +k+ +
  MMETSP0890-20130614|5313_1 130 VVLNSTDLKKTEAYWCGVLGATKFKVPP 157
                 78999***************99888766 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00033      0.64       4      28 ..     303     327 ..     300     380 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00033
   PF13098.1   4 ngkrvivvftdpdCpyCkklhkelk 28 
                   k  +++f + +C +Ckkl + l 
  MMETSP0890-20130614|5313_1 303 SSKLALLDFGASWCKNCKKLLPFLH 327
                 57889999**********9976665 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-05     0.044      13      35 ..     300     322 ..     295     329 .. 0.88
   2 ?   -2.7   0.0       2.9   5.7e+03      57      78 ..     335     357 ..     332     361 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.3e-05
   PF13899.1  13 areegkpllvifgadwcpdCqal 35 
                 + ++ k  l++fga+wc  C++l
  MMETSP0890-20130614|5313_1 300 LSASSKLALLDFGASWCKNCKKL 322
                 56788999************997 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.9
   PF13899.1  57 rvdvterdanleldr.qgvPvvv 78 
                  +dv+e +a ++ ++   vP+++
  MMETSP0890-20130614|5313_1 335 TIDVDEAEALASKFQvSAVPHFI 357
                 57777777766555535588876 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.7e-05      0.15       4      46 ..     311     349 ..     306     357 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.7e-05
                 EE-STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHHS CS
  PF00462.19   4 ftkptCpyCkkakrlLdelgvkyeeidvdedpeireelkelsg 46 
                 f+ ++C+ Ckk   +L++   + ++idvde +++  +      
  MMETSP0890-20130614|5313_1 311 FGASWCKNCKKLLPFLHTISTPLATIDVDEAEALASKF----Q 349
                 66789*************************86554443....4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.86
# Mc/sec: 1078.36
//
Query:       MMETSP0890-20130614|5319_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.44s 00:00:01.05 Elapsed: 00:00:00.72
# Mc/sec: 1045.08
//
Query:       MMETSP0890-20130614|5322_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   13.2   0.5      0.032   12.9   0.3    1.1  1  PF02181.18 Formin Homology 2 Domain
      0.056   12.9   0.1       0.07   12.6   0.1    1.1  1  PF08878.6  Domain of unknown function (DUF1837)


Domain annotation for each model (and alignments):
>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   4.7e-06     0.032     261     320 ..      33      97 ..      21     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.7e-06
                 GHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHCHHT.....TSSTT-THHHHHHHHHH CS
  PF02181.18 261 dlsselsnvekaakvdleelekdvkklekglkklekeleksee.....keeesdkfvekleefle 320
                  lsse+   ++aa+++l+++  +  +l++ l  +e++lek ++     k ++++++ ekl++ l+
  MMETSP0890-20130614|5322_1  33 TLSSEPVAARSAAEMELKSVPGESTDLKDMLSGFETKLEKDKRvaeqkKLDDEKPLQEKLKDSLK 97 
                 6899*************************************999888766777777777777665 PP

>> PF08878.6  Domain of unknown function (DUF1837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     1e-05      0.07     120     162 ..      57     101 ..      46     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1e-05
   PF08878.6 120 eslkkfl..sddslnkelnlisdriddedeeekealkklldpsss 162
                 ++lk++l   + +l+k++++ ++++ d++++++e+lk+ l+p++s
  MMETSP0890-20130614|5322_1  57 TDLKDMLsgFETKLEKDKRVAEQKKLDDEKPLQEKLKDSLKPNTS 101
                 567777777799***********999999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.82
# Mc/sec: 379.91
//
Query:       MMETSP0890-20130614|5317_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.20u 0.45s 00:00:01.65 Elapsed: 00:00:01.07
# Mc/sec: 1711.04
//
Query:       MMETSP0890-20130614|5321_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 296.02
//
Query:       MMETSP0890-20130614|5325_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-36  125.7   2.5    1.7e-36  125.2   1.7    1.2  1  PF01061.19 ABC-2 type transporter
    3.2e-12   46.7   0.0    6.9e-12   45.6   0.0    1.5  1  PF00005.22 ABC transporter
  ------ inclusion threshold ------
      0.083   12.7   0.0      0.083   12.7   0.0    2.8  4  PF13304.1  AAA domain
       0.23   11.7   2.3       0.34   11.2   0.0    2.4  3  PF12292.3  Protein of unknown function (DUF3624)


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   1.7     5e-40   1.7e-36       2     209 .]     309     518 ..     308     518 .. 0.96

  Alignments for each domain:
  == domain 1    score: 125.2 bits;  conditional E-value: 5e-40
  PF01061.19   2 qikallkreflqryrdpslgllwkliqpllmalvfgtvfgnlg.nssgglqrpgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldls...fflflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrsnll 209
                 q+++ll r ++  +rd ++  l+++ + +++++++g vf+nl+ n +++ +r+g++ fsvl +a +l++ ++++f++er ++ re++++l+ +s+++ a++ +elp  l++++i+ +i+y+++g++ +   f+l++ ++ l +++++s+ +++++la++f  a++la++++ ++l++ G +i+ + +p+  +++  ln+l y+++al  n++
  MMETSP0890-20130614|5325_1 309 QFRVLLSRALRYKIRDDEVA-LTQISMSIIFSVIIGAVFFNLNkNVESVTNRIGAISFSVLLMA-FLAFDVVILFPKERDLYRREKRAGLHCASSFFHARCCAELPSHLIAGAIYAIISYYMMGFQNDtrkFLLYISMMELELFTGTSVLIACGCLARDFAGANNLATIFICIFLMFDGHYINNKEIPSGARFVKDLNYLNYGISALSLNEF 518
                 99***************999.**********************7777777**************.6666666*********************************************************999*******************************************************9899****************99887 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0     2e-15   6.9e-12      36     118 .]      40     134 ..       9     134 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 2e-15
                 H.EEEE-------.--BHHHHHH----S--.......-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  36 r.igyipqdpllfpeltvrenldmakeekk.......tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 r  g+++q+ l f +lt+re+l+++    +        +k++  vl+++ l +++d+    +r ++LSgG+ +r+++A++ll +p  ll+DEPt+
  MMETSP0890-20130614|5325_1  40 RaCGMVEQHSLFFWNLTARETLKYQAMLRQpddstesITKKVNSVLADLDLLQAADTycgdERHKGLSGGELRRLSIAQELLADPSTLLADEPTS 134
                 259*******************98887767999999999999*********9999999999********************************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.26   8.9e+02       9      22 ..       4      17 ..       4      38 .. 0.77
   2 ?   12.7   0.0   2.4e-05     0.083     236     272 ..     105     138 ..      22     150 .. 0.69
   3 ?   -3.1   0.1       1.6   5.4e+03     118     155 ..     320     357 ..     287     390 .. 0.47
   4 ?   -1.4   0.0      0.48   1.6e+03     163     203 ..     472     514 ..     431     530 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.26
   PF13304.1  9 gsGKSnlLkaldfl 22
                gsGK++lL + ++ 
  MMETSP0890-20130614|5325_1  4 GSGKTSLLGICAGH 17
                8*******887665 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.4e-05
   PF13304.1 236 dlSdGtkrllalltallsalekgsvlliDEpEngLHP 272
                  lS G++r l+++  ll ++   s+ll DEp +gL+ 
  MMETSP0890-20130614|5325_1 105 GLSGGELRRLSIAQELLADP---STLLADEPTSGLDA 138
                 34******************...99**********85 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.6
   PF13304.1 118 irggikifslltlslnsandllflkiltdilkrfisil 155
                  +   ++  l ++s+++ ++ + +  ++++ k+ +s  
  MMETSP0890-20130614|5325_1 320 YKIRDDEVALTQISMSIIFSVIIGAVFFNLNKNVESVT 357
                 33333333334444444444444444444444444444 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.48
   PF13304.1 163 ni..eislfelfkdlflesklkrlldllikgiddleielsdlk 203
                  +  +i +f +f+ ++ ++k+++   +++k++++l++ +s l 
  MMETSP0890-20130614|5325_1 472 LAtiFICIFLMFDGHYINNKEIPSGARFVKDLNYLNYGISALS 514
                 3344566666666666666666666666666666666666553 PP

>> PF12292.3  Protein of unknown function (DUF3624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.34      26      68 ..     332     377 ..     315     385 .. 0.85
   2 ?   -3.5   0.0       3.7   1.3e+04      33      57 ..     455     479 ..     444     480 .. 0.67
   3 ?   -1.6   0.0      0.94   3.2e+03      59      74 ..     554     569 ..     547     576 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
   PF12292.3  26 tvlsvvswllwwvlfkdtpksvesialllaavafsgLlllhl...v 68 
                 + +s++  ++   +f++  k+ves++  + a++fs Ll++ l   v
  MMETSP0890-20130614|5325_1 332 ISMSIIFSVIIGAVFFNLNKNVESVTNRIGAISFSVLLMAFLafdV 377
                 4589999999999**************************9885553 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.7
   PF12292.3  33 wllwwvlfkdtpksvesialllaav 57 
                  l+   + + + + ++ +a++++++
  MMETSP0890-20130614|5325_1 455 VLIACGCLARDFAGANNLATIFICI 479
                 4555556666777788899999885 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.94
   PF12292.3  59 fsgLlllhlvvlayra 74 
                 ++  ++l l++la+r+
  MMETSP0890-20130614|5325_1 554 ATNFWALALIALAWRT 569
                 4567778888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:01.14
# Mc/sec: 1210.68
//
Query:       MMETSP0890-20130614|5327_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.73
# Mc/sec: 600.73
//
Query:       MMETSP0890-20130614|5331_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-14   51.4   0.1    6.4e-14   51.4   0.1    2.0  3  PF05064.8  Nsp1-like C-terminal region
  ------ inclusion threshold ------
      0.034   14.0   3.8      0.064   13.1   2.7    1.5  1  PF07798.6  Protein of unknown function (DUF1640)
      0.041   12.9   3.7       0.83    8.6   1.4    2.1  2  PF04582.7  Reovirus sigma C capsid protein
       0.43   10.5   5.6        4.8    7.1   1.4    2.1  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.58    8.4   5.4        2.5    6.3   3.7    1.8  1  PF13166.1  AAA domain
          1    9.5   6.4       0.48   10.6   1.5    2.4  3  PF00435.16 Spectrin repeat
        1.7    7.9   9.1       0.45    9.7   3.7    1.7  2  PF09321.5  Domain of unknown function (DUF1978)
        2.9    7.9  12.9       0.69    9.9   2.5    3.1  3  PF13747.1  Domain of unknown function (DUF4164)


Domain annotation for each model (and alignments):
>> PF05064.8  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   3.8e-17   6.4e-14      10     109 ..     170     267 ..     161     274 .. 0.91
   2 ?   -2.5   0.1         2   3.4e+03      91     106 ..     293     308 ..     286     315 .. 0.58
   3 ?   -2.8   0.0       2.4   4.2e+03      79     101 ..     338     360 ..     332     363 .. 0.61

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.8e-17
   PF05064.8  10 pssasrlknktLdelinkWateLeeqekeFeeqakkvneWDrlLvengekiskLysevvkaeqeqnkldqeLdfvesqqdeLeslLdryEeeieellskl 109
                 ps   +l++kt +++++ W++ L+ + + Fe+qa++ +eW++ +     +i ++ +  +++  eq++ ++ Ld v++ qdeL++ L+ +E+++++ + ++
  MMETSP0890-20130614|5331_1 170 PS--AKLRQKTVEKIVHGWKETLTANLDDFEKQADTLREWENEIRAAQRDIVQVSRYAERLYIEQQRTERILDEVRAYQDELDANLEGMERQVDDHFARA 267
                 33..47***************************************************************************************9988655 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2
   PF05064.8  91 LeslLdryEeeieell 106
                 L+++Ld++ + + +l+
  MMETSP0890-20130614|5331_1 293 LNAMLDQLKQLVTQLN 308
                 4555555555555444 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.4
   PF05064.8  79 qeLdfvesqqdeLeslLdryEee 101
                 q+L+f++++ +e ++ ++++E++
  MMETSP0890-20130614|5331_1 338 QSLAFLNTKASEIDTDVSSLESD 360
                 56666666666666666666554 PP

>> PF07798.6  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.7   3.7e-05     0.064      20     146 ..     178     310 ..     170     362 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.7e-05
   PF07798.6  20 qaeaivkalvevlndslevvakdlvtkeeqekseyqqksdlaklkselvs...........lekse..fsnlqaeneklksdleklknkLrdeinkvraevrLDlnLEksrireelaeqekkiketntkidteiagLktq 146
                 +       + ++++   e+++ +l   e+q  + ++++ ++ +++ ++v+            +++e  +  ++a ++ l ++le ++ ++ d   ++ + + LD  +E+ +  +++ + e +++ +  ++ + +++L ++
  MMETSP0890-20130614|5331_1 178 T-------VEKIVHGWKETLTANLDDFEKQADTLREWENEIRAAQRDIVQvsryaerlyieQQRTEriLDEVRAYQDELDANLEGMERQVDDHFARAASRAPLDADIEREQTYDLAIDLEIRLNAMLDQLKQLVTQLNAR 310
                 3.......4444444445555555555556666666666666666666633333333444444444226789999***********************************888888888888666555555555555443 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.012        21      19      99 ..     186     266 ..     169     280 .. 0.85
   2 ?    8.6   1.4   0.00049      0.83      60     135 ..     288     361 ..     268     363 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.012
   PF04582.7  19 ltssvtinpGdltavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsse 99 
                    + t n  d+ +  + l + e   ++ ++ + ++s     l  + q + + ld+v+a  +el ++++ ++  vd   + 
  MMETSP0890-20130614|5331_1 186 WKETLTANLDDFEKQADTLREWENEIRAAQRDIVQVSRYAERLYIEQQRTERILDEVRAYQDELDANLEGMERQVDDHFAR 266
                 5556788999999999999*************************************************9999999876655 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00049
   PF04582.7  60 dlsadlqdvtsslddvkaelkelst.evaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdv 135
                 dl+  l+ +   l+++ ++l+  +  +  ++ +s+d    +  d+ ++ +ah+++l++l+t+     td+s l+sd+
  MMETSP0890-20130614|5331_1 288 DLEIRLNAMLDQLKQLVTQLNARQDlDSGTVGTSIDP---DSRDIVKILNAHHQSLAFLNTKASEIDTDVSSLESDL 361
                 4444555555555555555443221122333444443...4467889999************************985 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.4    0.0028       4.8      24      99 ..     190     266 ..     173     275 .. 0.84
   2 ?    4.8   0.1     0.014        24      24      99 ..     283     356 ..     273     363 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0028
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
  PF02403.17  24 dkedvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelka.leaelkeleaelek 99 
                  ++++d++ +  +  re+++e+  +q+   ++s+  +++  +++ +e++++ev++ ++el+a le  ++++++ + +
  MMETSP0890-20130614|5331_1 190 LTANLDDFEKQADTLREWENEIRAAQRDIVQVSRYAERLYIEQQRTERILDEVRAYQDELDAnLEGMERQVDDHFAR 266
                 57899******************************************************975256677777776655 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.014
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  24 dkedvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 
                  ++ +d  + l++   +l++ + +l+a++   s ++g   +   d  ++++  ++  + l+ l+ + +e+++++ +
  MMETSP0890-20130614|5331_1 283 YDLAIDLEIRLNAMLDQLKQLVTQLNARQDLDSGTVGTSIDP--DSRDIVKILNAHHQSLAFLNTKASEIDTDVSS 356
                 56667777888999999*********************9985..56667777777777777777777777766654 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.7    0.0015       2.5     324     442 ..     235     356 ..     173     364 .] 0.41

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0015
   PF13166.1 324 veelkaelealeeeleklekaleeKlkdpfsslel.esiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlv...aelkedideyekklkklekkinslekeleklekeikk 442
                 +e + +e++a+++el+++ + +e + +d f + +    ++++ie  ++++d + +l  + N + d+lk+ ++++++++ l       +++ d  ++ k l++  ++++ l+++++++++++++
  MMETSP0890-20130614|5331_1 235 TERILDEVRAYQDELDANLEGMERQVDDHFARAASrAPLDADIE-REQTYDLAIDLEIRLNAMLDQLKQLVTQLNARQDLDSGtvgTSIDPDSRDIVKILNAHHQSLAFLNTKASEIDTDVSS 356
                 55555555555555555555555555555553332133344443.223333333333333444444444443333333333221112333333333333333333333333333333333333 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00028      0.48      30      97 ..     191     261 ..     169     266 .. 0.80
   2 ?   -0.4   0.0      0.75   1.3e+03      37      54 ..     294     311 ..     279     318 .. 0.70
   3 ?   -2.7   0.0       3.9   6.6e+03      58      86 ..     331     351 ..     324     360 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00028
                 SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTSTTH..HHHHHHHHHHHHHHHHHHHHHH CS
  PF00435.16  30 gkdleevqallkkhkaleaelaaqqervealnelaekl.ideghsas..eeieerleelnerWeeLlelaa 97 
                    l++ +++ +++++ e+e++a+q+ + ++   ae+l i+ +  +   +e+++ ++el+ + e ++++++
  MMETSP0890-20130614|5331_1 191 TANLDDFEKQADTLREWENEIRAAQRDIVQVSRYAERLyIEQQRTERilDEVRAYQDELDANLEGMERQVD 261
                 67899999******************************888875555667777777777777777766665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHHHH CS
  PF00435.16  37 qallkkhkaleaelaaqq 54 
                  a+l+++k+l  +l+a+q
  MMETSP0890-20130614|5331_1 294 NAMLDQLKQLVTQLNARQ 311
                 455566666666666655 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHTTSTTHHHHHHHHHHHH CS
  PF00435.16  58 ealnelaeklideghsaseeieerleeln 86 
                 + ln+  ++l          ++++ +e++
  MMETSP0890-20130614|5331_1 331 KILNAHHQSL--------AFLNTKASEID 351
                 3334333333........33333333333 PP

>> PF09321.5  Domain of unknown function (DUF1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.7   0.00026      0.45     142     217 ..     187     262 ..     175     271 .. 0.86
   2 ?   -1.1   0.1      0.55   9.4e+02     140     171 ..     278     312 ..     270     314 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00026
   PF09321.5 142 qetvseevrdLeealdkieeearqlvreqedywkeedvkeaElreeggekkrleevqeglesleellketkkeLde 217
                 +et + +  d e+  d + e+ +++ ++q+d +++ +  e    e++   + l ev+ +   l+  l+ +  ++d+
  MMETSP0890-20130614|5331_1 187 KETLTANLDDFEKQADTLREWENEIRAAQRDIVQVSRYAERLYIEQQRTERILDEVRAYQDELDANLEGMERQVDD 262
                 788999999*******************************6666666666779****9999999999998888875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.55
   PF09321.5 140 ekqetvseevr...dLeealdkieeearqlvreqe 171
                 e+++t +  +     L+ +ld++ +   ql++ q+
  MMETSP0890-20130614|5331_1 278 EREQTYDLAIDleiRLNAMLDQLKQLVTQLNARQD 312
                 44445444443333788888888888888888887 PP

>> PF13747.1  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.7     0.054        93      12      42 ..     189     219 ..     178     245 .. 0.47
   2 ?    9.9   2.5    0.0004      0.69       4      61 ..     240     303 ..     237     312 .. 0.74
   3 ?   -2.3   0.0       2.7   4.6e+03      34      48 ..     347     361 ..     336     364 .] 0.56

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.054
   PF13747.1  12 rLeaaldsLesaverrleaerkrdeleaeiq 42 
                 +L a ld  e++ ++ +e e++ ++++++i 
  MMETSP0890-20130614|5331_1 189 TLTANLDDFEKQADTLREWENEIRAAQRDIV 219
                 4444444444444444444444433333332 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0004
   PF13747.1   4 eeleaalkrLeaaldsLesaverrleaerkrdeleaeiqa.....ld.adrsrLaqeLdkaear 61 
                 +e++a++++L+a l+ +e +v+++  + ++r+ l+a+i++     l  + + rL++ Ld+ ++ 
  MMETSP0890-20130614|5331_1 240 DEVRAYQDELDANLEGMERQVDDHFARAASRAPLDADIEReqtydLAiDLEIRLNAMLDQLKQL 303
                 57899**************************888888865222222213466777777766555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.7
   PF13747.1  34 rdeleaeiqaldadr 48 
                 ++e+++++++l++d 
  MMETSP0890-20130614|5331_1 347 ASEIDTDVSSLESDL 361
                 344444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       800  (0.0585138); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.82
# Mc/sec: 1063.75
//
Query:       MMETSP0890-20130614|5332_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-21   75.5   6.8    4.3e-21   74.9   4.7    1.3  1  PF01595.15 Domain of unknown function DUF21
  ------ inclusion threshold ------
      0.037   13.5   0.0        1.2    8.7   0.0    2.7  2  PF00571.23 CBS domain
       0.06   13.1   2.0       0.12   12.1   1.4    1.5  1  PF00137.16 ATP synthase subunit C


Domain annotation for each model (and alignments):
>> PF01595.15  Domain of unknown function DUF21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   4.7   9.4e-25   4.3e-21       2     175 ..      30     196 ..      29     204 .. 0.91

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 9.4e-25
  PF01595.15   2 llliivlllllsaffsaaEtAlvslsrsrleelaeegn....kkakrllkllknp..erllatlllgntlanillg.alatlalaellgellavllavlvltllilvfgEilPktlal.rnperialllapplrvllkllyPlvwllsklanlllrllgvkpeeepavteeelralveesee 175
                 +l+ +++++ l+a+ +++++++vsl  ++l+  +e+g+     +a+rll+l+++   + +l++lll n++an +l+ +l +l+           ++a++++++++l++gE++P ++++    +r+a++++p+ ++l+ + +Pl+++l ++++ ++    +        + +e++a+v++ ++
  MMETSP0890-20130614|5332_1  30 NLIGALICVSLAAIAAGLTIGIVSLEAIDLRVKIETGTskekGYASRLLPLVEKTphHLVLVSLLLANSFANEALPlFLDELV---------PSWAAIVISVTVVLFVGELIPSAVFTgPSKLRVASACVPLAKFLIGFASPLAYPLALILDRVMPEEPSF------TSIQEVQAMVNIERQ 196
                 7999********************************998888999********954588899**************6666666.........9*************************779******************************9999888775......599999999998875 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.045     2e+02      21      39 ..     249     266 ..     230     274 .. 0.83
   2 ?    8.7   0.0   0.00026       1.2      38      53 ..     346     361 ..     317     364 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.045
                 HHHHHHHHTTSEEEEEEET CS
  PF00571.23  21 aleilrktgvsrlpVvDed 39 
                  l+++ + g+sr+p+  e+
  MMETSP0890-20130614|5332_1 249 TLQTIVNSGYSRIPIR-EE 266
                 578999********97.65 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00026
                 ETTEB---EEHHHHHH CS
  PF00571.23  38 edgrlvGiitlrDllk 53 
                 ++++l+Giitl+D+++
  MMETSP0890-20130614|5332_1 346 KYKNLLGIITLEDIIE 361
                 6799**********97 PP

>> PF00137.16  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.4   2.7e-05      0.12       2      29 ..      30      57 ..      29      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
  PF00137.16  2 aalgaglavglaalgagigigiagaaai 29
                +++ga ++v laa++ag+ igi+   ai
  MMETSP0890-20130614|5332_1 30 NLIGALICVSLAAIAAGLTIGIVSLEAI 57
                68********************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:00.69
# Mc/sec: 1927.50
//
Query:       MMETSP0890-20130614|5338_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        96  (0.00702165); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.33s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|5339_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.59
# Mc/sec: 763.58
//
Query:       MMETSP0890-20130614|5333_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.79
# Mc/sec: 676.44
//
Query:       MMETSP0890-20130614|5341_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-20   71.8   0.4    5.5e-09   35.6   0.0    3.2  3  PF00481.16 Protein phosphatase 2C
  ------ inclusion threshold ------
       0.14   11.7   0.0        1.4    8.4   0.0    2.1  2  PF07228.7  Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     8e-13   5.5e-09      31     152 ..      87     201 ..      71     230 .. 0.80
   2 !    6.6   0.0   0.00057       3.9     171     205 ..     348     378 ..     339     388 .. 0.85
   3 !   26.1   0.0   6.4e-10   4.4e-06     204     251 ..     405     448 ..     393     451 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 8e-13
                 CCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSE.....EEEEEE---EEEEEE---EE.EESS---STTSHHHHHHHH CS
  PF00481.16  31 kssvaffavfdghggreaakyarehleeilkerksfleleklekalrksfladtdeelksseantepsksGstavvalirgqk.....lyvAnvGDSravLcrsdnak.keltedHkpsnedEreRIe 152
                  ++ +ff++fdghgg ++a+  +++++  lk++k+++       ++++++ + +deel       e  ++Gsta +a +   +     + + +vGDSrav ++    k    +  H+ +ne E eR++
  MMETSP0890-20130614|5341_1  87 AENAHFFGIFDGHGGGQLARALAKKMPRRLKKAKTKE-------QIIDAYYE-IDEELGP-----EFATEGSTAACAKVERIDntkaiVTLSWVGDSRAVAIDMASKKlIWQSSIHHMTNEFELERLR 201
                 57889**********************6666655554.......56999999.9999997.....346789999998765433344888889*********99888886567999**********997 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00057
                 BSB----HHHC---ST-TSB---EEEEEEE-TT.-- CS
  PF00481.16 171 vsRalGdfelkpkekeqlvsaePdvtsvkidee.de 205
                 vsR+lGd+++ +       +++Pd++  +++ e d+
  MMETSP0890-20130614|5341_1 348 VSRSLGDYDSSR-----CLIPHPDISIDELSVEiDK 378
                 9**********9.....9********7666655554 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 6.4e-10
                 --EEEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHHHHH CS
  PF00481.16 204 defliLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdeaiar 251
                 ++  +LasDGlwdv+++q+++ lv +e +    p+ aa++l+ +a +r
  MMETSP0890-20130614|5341_1 405 WRRYVLASDGLWDVVNSQQVAKLVANEPT----PQLAADALLAYARRR 448
                 66779*********************987....9********999876 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.05   3.5e+02       6      90 ..      92     176 ..      88     187 .. 0.68
   2 ?    8.4   0.0   0.00021       1.4     128     192 ..     409     475 ..     406     476 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.05
                 EEEB--------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHG.GG----.TT--EEE-E...EES----EEEEEE-----EEE- CS
   PF07228.7   6 alvvgDvvGhGleAalimgllrsalrelataglepaevlerlnealarnleeeerfatavlae...ydpstgkleyanaGhpppllvr 90 
                 ++++ D+ G G  A +++  +   l+++ t++ +  ++  +++e l  ++++e  + ta +a+   +d  +  ++++ +G++ ++ ++
  MMETSP0890-20130614|5341_1  92 FFGIFDGHGGGQLARALAKKMPRRLKKAKTKE-QIIDAYYEIDEELGPEFATE--GSTAACAKverIDNTKAIVTLSWVGDSRAVAID 176
                 56777777777777777777766666666665.46666667777776777777..888888875567777777777777777766655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00021
                 EEE-----S--HHHHHH....HHHHHT----------HHHHHHHHHHH...........HCT----S-EEEEEEE- CS
   PF07228.7 128 llyTDGvtEardpdgelfgkerllallaeaegesleelldalveelle...........lgsgeleDDitllvlrv 192
                 +l++DG+ +  ++++         +l+a   + +++  +dal++ +++            g ++ +DD+t++v++v
  MMETSP0890-20130614|5341_1 409 VLASDGLWDVVNSQQVA-------KLVA--NEPTPQLAADALLAYARRrylkmldktkpSGTDPFKDDTTVIVFDV 475
                 79999999988665544.......3333..122366666666666666666677777778899**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.66
# Mc/sec: 1851.73
//
Query:       MMETSP0890-20130614|5345_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.033   14.2   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.4e-06     0.033       3      80 ..      36     112 ..      34     113 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.4e-06
                 EEETTTTSH---EEEESSTTSSSSEEEEESTTT.HHTTTTS.BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEEEE CS
  PF00595.19   3 slekekrgglGfslkggsdkrdkgifvsevvpg.gaaeagg.lkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLti 80 
                 +++++ +g+lG+ + + +d     ++v     +     a g + +GD Il+v g+ + +  + +  +++k++ ++v L++
  MMETSP0890-20130614|5345_1  36 TIPRQPNGSLGMVVREREDG---DCYVEGFADDaAELTARGsVIPGDHILAVAGKFIDGKGQRHLRELLKDAPDPVVLLL 112
                 678889*************7...8*********877888889******************************99888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.40s 00:00:01.44 Elapsed: 00:00:00.84
# Mc/sec: 1899.97
//
Query:       MMETSP0890-20130614|5347_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-32  111.3   0.2    1.1e-16   60.6   0.0    2.3  2  PF00069.20 Protein kinase domain
      1e-09   37.7   0.0    5.1e-08   32.2   0.0    2.1  2  PF07714.12 Protein tyrosine kinase
     0.0015   17.5   0.0     0.0024   16.8   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0059   15.9   0.0      0.011   15.0   0.0    1.4  1  PF05259.6  Herpesvirus glycoprotein L


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.1   1.5e-16   5.2e-13     114     154 ..       1      41 [.       1      56 [. 0.86
   2 !   60.6   0.0   3.2e-20   1.1e-16     149     260 .]      89     253 ..      58     253 .. 0.93

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.5e-16
                 HHHTCEE-S--SGGGEEEETT--EEE------EEECEESS- CS
  PF00069.20 114 lHsngiiHrDLKpeNiLldkkgelkiaDFGlakklekssek 154
                 +Hs +++HrD+Kp+NiLl+++g++k++D+Gl++ +++++e+
  MMETSP0890-20130614|5347_1   1 MHSANVVHRDIKPSNILLQENGHMKLCDLGLCRSISTRNED 41 
                 7********************************98555543 PP

  == domain 2    score: 60.6 bits;  conditional E-value: 3.2e-20
                 CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.....................................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20 149 eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.....................................................eelkdlikkllekdpakRltaeeilkhpwl 260
                 ++s ++ + +v+tr+Y+APE ll+++   +  D+W++++i+ e++ g ++++ges++dq ++i + l  + + d+  +s+++                                                     e+++ l+ k+++ dp+kR +a+++l+hpwl
  MMETSP0890-20130614|5347_1  89 QQSTGQREYYVATRWYRAPESLLGSSLCLPGLDIWAAACIIGEMYHGAPILPGESTTDQIYRILELLCISPDDDNTYDSNQQtndsqhnifakkncsrpespivtrlrhvliadsysddqksstfvdwflsedggEDARPLCAKMFRLDPQKRTSARDALSHPWL 253
                 6778888999*******************************************************999888888887777669999******************************************************************************6 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.5e-11   5.1e-08     119     159 ..       1      41 [.       1      62 [. 0.84
   2 !    3.5   0.0    0.0086        29     156     209 ..      88     142 ..      74     186 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.5e-11
                 HHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCE CS
  PF07714.12 119 LeskklvHrdLaarNvLleeekvvkisDfGLardiekddyy 159
                 ++s ++vHrd+   N+Ll+e+ ++k++D GL+r+i ++++ 
  MMETSP0890-20130614|5347_1   1 MHSANVVHRDIKPSNILLQENGHMKLCDLGLCRSISTRNED 41 
                 6899*******************************544443 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0086
                 TSCEEESTT-EECGGGS.-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTS CS
  PF07714.12 156 ddyykkkeeaklpvkWm.apEslkekk.ftsksDvWsfGvllwEiftlgespypgl 209
                 d++ + ++e  +  +W+ apEsl  ++ +    D+W+  +++ E++  g+   pg 
  MMETSP0890-20130614|5347_1  88 DQQSTGQREYYVATRWYrAPESLLGSSlCLPGLDIWAAACIIGEMYH-GAPILPGE 142
                 44556667778999**99****99887356678***********998.44444444 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.9e-07    0.0024     134     186 ..       1      53 [.       1      68 [. 0.77

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.9e-07
   PF06293.9 134 mhragvnHtdlnahnilldeeeekakvwliDldkarrrlrakk...wkekdLarLk 186
                 mh+a+v H+d+ + nill+e++   ++ l Dl  +r  +++++   w ++ +a  +
  MMETSP0890-20130614|5347_1   1 MHSANVVHRDIKPSNILLQENG---HMKLCDLGLCRSISTRNEdqlWTDQTFAGFY 53 
                 9********************9...99999**999987764431125566665555 PP

>> PF05259.6  Herpesvirus glycoprotein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.2e-06     0.011       8      56 ..     144     189 ..     137     197 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-06
   PF05259.6   8 radevssilkleClslpaesllytaeavenlsealtGifvkahCsppev 56 
                   d++ +il+l C+s p ++ +y++++  ++++    if k +Cs pe 
  MMETSP0890-20130614|5347_1 144 TTDQIYRILELLCIS-PDDDNTYDSNQ--QTNDSQHNIFAKKNCSRPES 189
                 678899*********.77777777766..55556689**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:01.18
# Mc/sec: 867.16
//
Query:       MMETSP0890-20130614|5352_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.46s 00:00:00.77 Elapsed: 00:00:00.81
# Mc/sec: 286.97
//
Query:       MMETSP0890-20130614|5356_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   11.0   6.0       0.18   11.7   2.0    2.2  2  PF10774.4 Domain of unknown function (DUF4226)
        2.6    8.4   7.5       0.62   10.4   0.4    2.5  2  PF07743.8 HSCB C-terminal oligomerisation domain
        5.8    5.7   7.9       0.66    8.8   1.3    1.9  2  PF13393.1 Histidyl-tRNA synthetase


Domain annotation for each model (and alignments):
>> PF10774.4  Domain of unknown function (DUF4226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.0     4e-05      0.18      20      77 ..      28      84 ..      19     119 .. 0.80
   2 ?    0.3   0.2      0.13   6.1e+02      39      57 ..     102     120 ..      84     141 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4e-05
   PF10774.4 20 qhsalseadrqlveallsAhasavegrrrLdaiqqeieeavakqadalDTpaGarefq 77
                q s + e  ++  +a+++Ah++++++ rr+ + q  +  a+++ +++l   +Ga++fq
  MMETSP0890-20130614|5356_1 28 QASKILESQNNNPQAITNAHENLQKA-RRIAEAQSALSYAIKRARNTLHSRVGAKQFQ 84
                66777777778889*******99875.78999************************98 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
   PF10774.4  39 hasavegrrrLdaiqqeie 57 
                 ++ ++eg++ L++++ +ie
  MMETSP0890-20130614|5356_1 102 NDLTKEGENLLEELKSQIE 120
                 4557788888888877665 PP

>> PF07743.8  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.9     0.087     4e+02      13      40 ..      46      71 ..       9      98 .. 0.60
   2 ?   10.4   0.4   0.00014      0.62       7      45 ..     115     154 ..     102     160 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.087
   PF07743.8 13 lrEaLedaqasdddealeelkkeveari 40
                ++E+L+ a+     ea ++l+  ++  +
  MMETSP0890-20130614|5356_1 46 AHENLQKARR--IAEAQSALSYAIKRAR 71
                3455555532..1244444444444444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00014
   PF07743.8   7 LmeqMelrEaLedaqas.dddealeelkkevearikella 45 
                 L  q+e+r +Le a ++ +  +al++ kk ++ + +++++
  MMETSP0890-20130614|5356_1 115 LKSQIEIRHNLEHATSAtERRNALDAAKKANQTQLAAYEQ 154
                 788***********99855559999999999888877765 PP

>> PF13393.1  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3   0.00014      0.66     184     247 ..      11      74 ..       3     100 .. 0.79
   2 ?    0.8   0.6      0.04   1.8e+02     175     207 ..     109     142 ..      72     161 .. 0.43

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00014
   PF13393.1 184 peleellaekglkeaaadlleallelegdaevleealeelaaapalqaaldeleklaalleala 247
                  el+  l++ +l++a +++ + l + +++++++ +a+e+l++a+++++a+++l +  + ++++ 
  MMETSP0890-20130614|5356_1  11 VELRPDLQSPALESARTQASKILESQNNNPQAITNAHENLQKARRIAEAQSALSYAIKRARNTL 74 
                 555555566667666667766677999***************************9999888764 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.04
   PF13393.1 175 raalqr.kdlpeleellaekglkeaaadlleall 207
                  ++l++ k+  e+++ l+++  +++ +++l+a +
  MMETSP0890-20130614|5356_1 109 ENLLEElKSQIEIRHNLEHATSATERRNALDAAK 142
                 2222221222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1350  (0.098742); expected 273.4 (0.02)
Passed bias filter:                      707  (0.0517115); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:01.23
# Mc/sec: 325.36
//
Query:       MMETSP0890-20130614|5365_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.9   0.2      0.048   13.5   0.1    1.8  2  PF03855.8 M-factor


Domain annotation for each model (and alignments):
>> PF03855.8  M-factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.26   3.5e+03      30      34 ..      36      40 ..      28      46 .. 0.68
   2 ?   13.5   0.1   3.5e-06     0.048       4      32 ..      56      84 ..      54      86 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.26
   PF03855.8 30 vKNYT 34
                +KNY 
  MMETSP0890-20130614|5365_1 36 LKNYE 40
                57885 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.5e-06
   PF03855.8  4 iAtsvsSSSvVNAyNknPadvlktktvKN 32
                +A ++ S SvV   Nkn ++ +  k  KN
  MMETSP0890-20130614|5365_1 56 MAQETFSNSVVPLQNKNHTQAVIEKHFKN 84
                9*******************999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.49
# Mc/sec: 493.94
//
Query:       MMETSP0890-20130614|5362_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-39  133.5   0.0    8.3e-39  133.2   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0     6e-43   8.3e-39       3     155 ..      33     188 ..      31     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: 133.2 bits;  conditional E-value: 6e-43
                 XXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--...STT-------S-TT.THHHH---HHHHHHHHTT------..------------------.-----------STTT----TTTTT------- CS
  PF00504.16   3 aeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa..waeagglslptllalqillligflelareqelkapeseg..sekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 ++l+g ++++ g fDpl+ls+     +lk++reaEl+HGRvAMla+lG+lv e++  l    + +++p+   ++a        ++ ++++++g++e+   ++++ p+++    + ++  G+lgfdplgl+ +d++e+ el++kE++nGRlAM++++g+v+q+
  MMETSP0890-20130614|5362_1  33 EDLPG-VIAPTGfFDPLSLSSGLspaRLKYYREAELKHGRVAMLAALGFLVGENFHPLF--GGDIDVPSyiAFQAT---PLENFWPIVIAAVGWFEYINIEKFNVPGEGFwtLKPEYENGDLGFDPLGLKpTDAAELSELQTKELQNGRLAMLGIAGMVAQE 188
                 78999.999***********433457***************************997654..467899997644444...6677888************999998887777*75556778******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 757.56
//
Query:       MMETSP0890-20130614|5360_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-77  260.9   1.8    1.6e-76  257.2   1.2    2.6  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2   1.2   1.2e-80   1.6e-76      25     415 ..      40     514 ..      35     516 .. 0.89

  Alignments for each domain:
  == domain 1    score: 257.2 bits;  conditional E-value: 1.2e-80
                 -EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTTECC.......S-E...ECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTS..EEEEES-TTCCHHCTTTHHHHTTT-EEE....................EESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.........................................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT-BEE-S--.................--EEEESTTS--B-TT-HHHHHHHBCCSTTEEE---EEEE-TT--EEEE--GGGEEE--.--EEEHHHHHHHHHTSTTEEE CS
  PF00501.23  25 drVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivrtdk.......eed...svgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpdd..rvlsllplhfdgsilellaplllGatvv....................lvspedlkdpalllddiekykvtvlalvptvlelllkaiek.........................................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeegkevppgev.................GEllirgpgvakGYlkdpeltaeafdedgwlyrTGDlgrldedGyleiiGRkkdqikir.GeniepgeiEsallehpgvae 415
                 +++ ++ ++s++w+ a+l++++++ v+++ y+tl+ + +a+++n s + v++t+ ++++++       +  + + i++td        ++d      ++ +++e   + +  ++ ++ +++p+++a+i+yTSG+TGkPKGVm+ h ++++++ g+++ +   ++   ++l +lp ++++++++ l++l lG+ v                     + ++           +i+++++ ++a+vp +++ l ka+e+                                         +k   ++l++ +sgg ++s e++ ++r af +++ v+gY ltEt++ +t+++ ++ +   g +G+pl+ ve+k+ d e  + ++g +                 GE++irgp +  GY+k+p++tae+f +dgw ++TGD+g +++dG+l+i++R k++ik++ Ge+i+ +  E  ++++ +va 
  MMETSP0890-20130614|5360_1  40 HTILLFEDTSAQWMTAALGAAYYSLVVATSYATLGIDSVAEAVNVSTVPVVVTNRKQVDAVTNLVTGGKCASLKHIIYTDVyvspedvQNDlvqAGSVNLFKFESMISMGINNPTKPIKPSPESVALIMYTSGSTGKPKGVMIKHSSICSSIGGLSDVLSTMAKPgdTYLGYLPQAHILEFCAELTCLNLGVSVGyadprtlsstgavrerpdgtVNTKAG---YPYPPGAIQEFRPCFMAGVPKIWDILKKAMEDnvskmspikkmlfqiafvgraaalrqhreapllkalvfsklAKMLGGNLKATVSGGGAISSEVQTFVRVAF-ACPAVQGYALTETCCSATFQPADAGN-LDGVVGPPLSSVEIKLQDVE-VTDADGKPyrasdtkhaggipcrgrGEICIRGPPLSIGYFKQPDKTAEVFGNDGW-FHTGDVGIWRPDGMLQIVDRLKNLIKLKgGEYIAIEHMEKEYATCTYVAP 514
                 5789999******************************************************999999998888888885555777777333565555666666666666667777777889**********************************998876655555****************************66666666666655555553222222...455556666**********************************************************************************************.5************************7.***************99999.6666776677788889999999999******************************.***************************66*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:01.19
# Mc/sec: 1302.89
//
Query:       MMETSP0890-20130614|5367_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   47.6   0.2    1.2e-12   47.4   0.1    1.0  1  PF13593.1 SBF-like CPA transporter family (DUF4137)


Domain annotation for each model (and alignments):
>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   8.7e-17   1.2e-12     262     312 ..       4      56 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 8.7e-17
   PF13593.1 262 fcgsaKslalgvplasvlfgsnp..qlgllllPlllyhliqlvvasvLvsrla 312
                 f   +K++algvpl+  +f +++  q+g+lllPll+yh+ ql+v s+L++rla
  MMETSP0890-20130614|5367_1   4 FGSCQKTVALGVPLIDAIFSDASrsQIGILLLPLLIYHPAQLIVHSALSPRLA 56 
                 6667***************988888************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 422.04
//
Query:       MMETSP0890-20130614|5373_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-57  193.1   0.1    3.2e-57  191.9   0.0    1.7  1  PF01798.13 Putative snoRNA binding domain
    1.3e-24   85.6   0.0    3.4e-24   84.2   0.0    1.8  1  PF08060.8  NOSIC (NUC001) domain
    3.9e-12   46.0   0.1    1.1e-11   44.5   0.0    1.9  1  PF08156.8  NOP5NT (NUC127) domain


Domain annotation for each model (and alignments):
>> PF01798.13  Putative snoRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.0     7e-61   3.2e-57       1     148 [.     284     430 ..     284     432 .. 0.98

  Alignments for each domain:
  == domain 1    score: 191.9 bits;  conditional E-value: 7e-61
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---HHHHHHHHH---HHHHHT--HHHHTT----------------------GGGSHHHHTS-SS----HHHHHHHHHHHHHHHHHH-----TH.....HHHHHHHHHHH-- CS
  PF01798.13   1 nikelaerveeLaelrkqleeyieskmekiAPnltalvGekvgArLishaGsleeLaklpastiqvlGaekalfralktkaktpkyGliyqseliqkapkkvkgkiaRllaaKlalAarvDalseesdesvlgkelreelekrlekle 148
                 ni +++er+  La +r+ql  y+e+km+++APnlt++vG +vgArLi++aGsl++Lak+past+q+lGaekalfralk+k +tpkyGliy+s+++++a+kk kg+i+R+la+K+a+A+r+Da+ +e ++ ++g+++re++e+rl+ + 
  MMETSP0890-20130614|5373_1 284 NIMNFTERMVALATYRAQLGLYLEDKMRHVAPNLTTIVGDTVGARLIAKAGSLSSLAKCPASTVQILGAEKALFRALKNKGNTPKYGLIYHSTFVGRATKKDKGRISRYLANKCAIASRIDAFADELTD-KYGIQMREQVEERLRFFD 430
                 6899*****************************************************************************************************************************.5*************9875 PP

>> PF08060.8  NOSIC (NUC001) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   7.5e-28   3.4e-24       1      53 []     165     217 ..     165     217 .. 0.98

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 7.5e-28
   PF08060.8   1 mIiqaiellddiDkeinlfhmrlrewYswhFPELekivkdnidYakvVklign 53 
                 mIiq+i lld++Dk+in+++mr+rewYswhFPEL  +v+dn  +a++++++g+
  MMETSP0890-20130614|5373_1 165 MIIQCIGLLDTLDKDINTLAMRCREWYSWHFPELRDLVRDNFAFARAAAVLGD 217
                 9***********************************************99986 PP

>> PF08156.8  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   2.5e-15   1.1e-11       8      66 ..       2      60 ..       1      61 [. 0.96

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.5e-15
   PF08156.8  8 aaGYaLfkvkdekllikde.kevqksfkdvekfsksvkLksFqkFesaaeALeeaaalse 66
                aaGY L++v  e ++i++  +e+qk+++d++ +s+++kL +F+ F sa+eALe++ alse
  MMETSP0890-20130614|5373_1  2 AAGYMLLEVI-EMDEIGALkSEMQKAMNDANVLSRMCKLRAFSAFVSAEEALEDILALSE 60
                8*********.999999998**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1010  (0.0738736); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.85
# Mc/sec: 1609.79
//
Query:       MMETSP0890-20130614|5374_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-32  111.0  12.9      4e-32  111.0   9.0    2.8  4  PF04172.11 LrgB-like family
     0.0035   16.9  10.3     0.0077   15.8   2.7    2.9  2  PF03788.9  LrgA family
  ------ inclusion threshold ------
      0.092   12.1   0.0       0.41   10.0   0.1    2.1  2  PF06196.7  Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> PF04172.11  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.015        67      53     103 ..     106     154 ..      65     161 .. 0.73
   2 ?   -3.3   0.0      0.81   3.7e+03      14      37 ..     194     217 ..     190     226 .. 0.66
   3 ?   -3.8   0.0       1.2   5.3e+03       1      18 [.     231     248 ..     231     249 .. 0.89
   4 !  111.0   9.0   8.7e-36     4e-32      12     207 ..     272     473 ..     262     481 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.015
  PF04172.11  53 flLgpatValAvPLYkqlkllkkhwlpilvglvvgsvvailsvvllakllg 103
                 ++ +p  +   +PL k ++    +w+++ + ++ g +v +++++l+a ++ 
  MMETSP0890-20130614|5374_1 106 VFFAPNLIT--LPLAKPIASGLIEWTKLSCVVIFGLFVTMATSALVAAAFD 154
                 444444443..3666666666667888888888888888888888887775 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.81
  PF04172.11  14 ktkslllnPlllaivllialllll 37 
                 ++ ++ll Pl+l+  +  ++  ++
  MMETSP0890-20130614|5374_1 194 NFGKPLLLPLILTSFISFVVFSCT 217
                 556677777777777666665554 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.2
  PF04172.11   1 tllayliakllykktksl 18 
                 tl+ay+i+ +l+++ +++
  MMETSP0890-20130614|5374_1 231 TLAAYAISCRLSDRLNNF 248
                 899*********999986 PP

  == domain 4    score: 111.0 bits;  conditional E-value: 8.7e-36
  PF04172.11  12 ykktkslllnPlllaivllialllllk........isyetYkk.ggellsflLgpatValAvPLYkqlkllkkhwlpilvglvvgsvvailsvvllakllglseeliasllpksvTtpiAlevsekiggipaltavaviltgilgavlgelllkllki..kdpvarGlalGtashavGtakalelgeeegamaslalvlagiltvll 207
                   kt +    P++l+ +l++a+l+l++         ++e Y + gg +l+ +Lgp ++ lA  +Y +++ +++ wlp+ +++ +g+++++  ++l  ++l+l+ ++ +sllp+ vT+p+Al++ + ++ +p  + +++ +tgilga+lg+++l+ ++i  k++ arGla+G+a+h+vGta+    ++ +  +as+a++l++ l v l
  MMETSP0890-20130614|5374_1 272 VAKTAH----PVILTSLLVTAILYLTGaflgfsniAATELYAAtGGPFLTRMLGPCVIGLACGVYARRRDIARAWLPVSTAVGTGAITGLYGTALAVNFLQLPLQAKLSLLPRCVTSPLALPILSTLKVDPGAALAIISVTGILGAALGPVFLSAIGIgaKKSRARGLAMGAAAHGVGTAQMA-SEPYAQPYASIAMALTAALSVAL 473
                 444444....45555555555555554444455544567786537899***********************************************************************************************************999445669****************965.5778889*********9887765 PP

>> PF03788.9  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.7   1.7e-06    0.0077      13      95 ..      66     150 ..      57     151 .. 0.77
   2 !    3.8   0.3    0.0088        40      15      95 ..     279     364 ..     266     365 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.7e-06
   PF03788.9  13 alplPgsviGlllLlllLllkvvklewvekvaelLlahlsLlFvPagvgvveyldl..laaeglaillvlvvstllvllvtglvv 95 
                 +  + gsv+++ll ++    + ++ + ++ +++ Ll+ ++++F P  + +     +     e+ ++ +v++++ ++++++ +lv+
  MMETSP0890-20130614|5374_1  66 HSLVAGSVLAILLTMTRNFGESIHEKCLAPGSKILLKWMAVFFAPNLITLPLAKPIasGLIEWTKLSCVVIFGLFVTMATSALVA 150
                 344566666666666666656677799******************99987655554005569******************99986 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0088
   PF03788.9  15 plPgsviGlllLll..lLl.lkvvklewv..ekvaelLlahlsLlFvPagvgvveyldllaaeglaillvlvvstllvllvtglvv 95 
                  + +s++  ++L+l  ++l +  + ++++  ++++ +L++ l    +  + gv +  + +a+ +l++ +++  + ++ l  t+l+v
  MMETSP0890-20130614|5374_1 279 VILTSLLVTAILYLtgAFLgFSNIAATELyaATGGPFLTRMLGPCVIGLACGVYARRRDIARAWLPVSTAVGTGAITGLYGTALAV 364
                 4444544444444311334455555554411566789999999999999****************************999999876 PP

>> PF06196.7  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1     9e-05      0.41      38      74 ..     121     158 ..      99     164 .. 0.74
   2 ?   -3.5   0.0       1.4   6.6e+03      45      75 ..     342     372 ..     341     374 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9e-05
   PF06196.7  38 yilglPlWFelsCillpilfivlvy.livkfvfkdipl 74 
                    gl +W  lsC++++ lf+++   ++v   f  ++ 
  MMETSP0890-20130614|5374_1 121 IASGLIEWTKLSCVVIFGLFVTMATsALVAAAFDTVDK 158
                 567999************99988641677777877765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.4
   PF06196.7  45 WFelsCillpilfivlvylivkfvfkdipld 75 
                 W  +s  +++  ++ l  +++ + f ++pl+
  MMETSP0890-20130614|5374_1 342 WLPVSTAVGTGAITGLYGTALAVNFLQLPLQ 372
                 8888888888899999999888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:01.12
# Mc/sec: 1052.69
//
Query:       MMETSP0890-20130614|5380_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 399.39
//
Query:       MMETSP0890-20130614|5377_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   13.3   1.0        0.1   12.4   0.7    1.5  1  PF12489.3 Nuclear coactivator


Domain annotation for each model (and alignments):
>> PF12489.3  Nuclear coactivator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   7.7e-06       0.1      69     124 ..     402     462 ..     353     465 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.7e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXX.--.- CS
   PF12489.3  69 rkrnsnssssqfsieleklsdlelkpeee.....dLsdwlvtadtvalrqkitsfgsiktd 124
                  +++  +s+s+fs  +e+++++ ++ +++       +++++ ad+++  + ++++gs++++
  MMETSP0890-20130614|5377_1 402 DEEEGRDSASTFSESKEEEQKFMMDLTDDqpnvlSPTTIYFSADSTTNANSTEDGGSLSPN 462
                 5677789**********************9*9777789******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:01.34
# Mc/sec: 842.30
//
Query:       MMETSP0890-20130614|5386_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-14   52.1   0.0    9.8e-14   51.1   0.0    1.5  1  PF10184.4  Uncharacterized conserved protein (DUF2358)
    1.2e-08   34.6   0.0      2e-08   34.0   0.0    1.2  1  PF07819.8  PGAP1-like protein
    9.5e-08   32.0   0.4    2.6e-07   30.6   0.1    1.9  2  PF12697.2  Alpha/beta hydrolase family
    3.8e-06   26.5   0.0    5.6e-06   26.0   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    2.9e-05   23.6   0.0    6.1e-05   22.5   0.0    1.5  1  PF00561.15 alpha/beta hydrolase fold
    0.00035   19.9   0.0    0.00062   19.1   0.0    1.3  1  PF10230.4  Uncharacterised conserved protein (DUF2305)
     0.0006   20.0   0.0     0.0014   18.9   0.0    1.6  1  PF12680.2  SnoaL-like domain
     0.0019   18.3   0.0     0.0067   16.5   0.0    1.9  3  PF00975.15 Thioesterase domain
     0.0044   16.4   0.0     0.0071   15.7   0.0    1.3  1  PF01764.20 Lipase (class 3)
  ------ inclusion threshold ------
      0.017   14.5   0.0      0.037   13.4   0.0    1.5  1  PF07859.8  alpha/beta hydrolase fold
       0.02   13.9   0.0      0.031   13.3   0.0    1.3  1  PF11288.3  Protein of unknown function (DUF3089)
       0.03   13.5   0.0      0.048   12.9   0.0    1.2  1  PF11187.3  Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> PF10184.4  Uncharacterized conserved protein (DUF2358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   8.6e-17   9.8e-14       2     111 ..      56     171 ..      55     173 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 8.6e-17
   PF10184.4   2 evieaLredlpk...lfekeldysiYsedveFedpltkfrtlerYkknlallr.flgrlff..advklellkitqteed.eiktrWtlsglprlpwkpklsfdGtStlklnkdgliv 111
                 e++e Lr+dl +   l++ +++ ++Y+ed++F dp+ kf++l  +++nl  l+ fl+r f   ++ +++l+++  ++e+  +++ W++ g ++lpw+p+l++dG + ++ ++dg+i+
  MMETSP0890-20130614|5386_1  56 ELVEGLRSDLVEreyLWSGDINSELYAEDCIFSDPTLKFEGLATFERNLESLEpFLKR-FApaSQRRVSLVDLFVDSEKkFVEACWRMVGDLALPWRPRLELDGRTRFTYGDDGRII 171
                 678889999854222669******************************9988736666.5322567899999988887779*********************************996 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.7e-11     2e-08      65     169 ..     317     414 ..     309     439 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.7e-11
   PF07819.8  65 ylnqairkilslysssekeptsviliGHSmGGlVArsaltlpnyikdsvntivtlasPhalpplafdkdleklyasvnefwkketeeksklenvllvsitgGirD 169
                 yl+ a + +l++  +++  +t +il GHS GG +Ar++l      + s++ +vtl++Ph +pp   d  + ++ + +     ++ ++++    + +++++g   D
  MMETSP0890-20130614|5386_1 317 YLETARNSVLEMI-QKSDTDTPLILCGHSAGGWLARALLRRYPELEMSITAVVTLGAPH-YPPRDRDCATRGVLSAL-----RHADQRDGPPTIPFITVAGDAID 414
                 999**********.88889999*****************988878889**********9.57767777777777765.....23333344566777777666655 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   1.2e+03     145     191 ..     126     172 ..      31     231 .. 0.66
   2 !   30.6   0.1   2.3e-10   2.6e-07      39     107 ..     288     394 ..     235     452 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1
                 HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHH CS
   PF12697.2 145 ealvradaaalaellraalldadlrealarldvPvlviageaDrvvp 191
                 + +v+++++ + +++r     a++++    ld  + + +g++ r++ 
  MMETSP0890-20130614|5386_1 126 DLFVDSEKKFVEACWRMVGDLALPWRPRLELDGRTRFTYGDDGRIIM 172
                 33334444444455554323333333333346666666666666655 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 2.3e-10
                 -....................--S...S--HHHHHHHHHHHHHH--..--EEEE--------HHHHHH----....EEEEEEE------STT..............- CS
   PF12697.2  39 d....................rppdydpdtledlaadlaalldalgl.rpvvlvGHSlGgavalaaaarrpd...lvrglvlidppgplpas..............a 107
                 d                    +   + +  le+    +++++++ ++ +p++l+GHS Gg++a a+++r+p+    + ++v +++p + p+               a
  MMETSP0890-20130614|5386_1 288 DwvkvftrgltdsnflrgnadWNTKAYDWYLETARNSVLEMIQKSDTdTPLILCGHSAGGWLARALLRRYPElemSITAVVTLGAPHYPPRDrdcatrgvlsalrhA 394
                 0444444433334444333223222223335666678899999988888*************************************976555555444444444331 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.9e-09   5.6e-06       2     141 ..     242     462 ..     241     463 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4.9e-09
   PF12695.2   2 vvlvhGaggdssay.........eplaealakrgfavvav............................dlpghgasegaa............aakrvlaadlldleriilvGhSlGGgvalelagrdd....rvkglvllap..f.pdgedlakltl................pvllihGtr.Dgvvppeeaek...................lakalpgdaelvviegasH 141
                 +++++G+g d+ +y          +l+  l +rg++ v+v                            +          +             + +++ ++ ++  ++il GhS+GG++a +l +r++    ++ ++v l++  + p++ d a+ ++                p+  + G++ D v +++  ++                   +a++l  +++ ++i+ga H
  MMETSP0890-20130614|5386_1 242 IIILPGFGNDAIDYqeplgqpkeVGLVSCLERRGCSSVTVvpiarsdwvkvftrgltdsnflrgnadwN----------TkaydwyletarnSVLEMI-QKSDTDTPLILCGHSAGGWLARALLRRYPelemSITAVVTLGAphYpPRDRDCATRGVlsalrhadqrdgpptiPFITVAGDAiDAVDSFTLDSYsrvatkdaqyfcgdgvvplTAAHLDFASKCITIDGALH 462
                 678888888877774444444333455589999999999988888888888877777654333333221..........1223333333233444555.5555557*******************8753444888*****99765455667777777788888888999988888888888876665444333322333344444444444333333333334466666666 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.4e-08   6.1e-05      22      80 ..     313     398 ..     276     452 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.4e-08
                 GGGGSHHHHHHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGG...GEEEEEEESB--.......................H CS
  PF00561.15  22 lphyttddlardleavldalglkk.ltlvGhSmGGmialayaaeypd...rvkamvllgtva.......................v 80 
                   +++ + +++ +   +++   +  l+l GhS GG +a+a++ +yp+   ++ a+v+lg+++                       +
  MMETSP0890-20130614|5386_1 313 AYDWYLETARNSVLEMIQKSDTDTpLILCGHSAGGWLARALLRRYPElemSITAVVTLGAPHypprdrdcatrgvlsalrhadqrD 398
                 5667778888888899999999999***********************************98888877777777555555555550 PP

>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.5e-07   0.00062      69     118 ..     322     370 ..     317     372 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.5e-07
   PF10230.4  69 idflkelvekkkkkkvklilvgHSvGaYialevlkrlseakfrikkvvlL 118
                 ++ + e+++k++  ++ lil gHS G ++a  +l+r++e +++i +vv L
  MMETSP0890-20130614|5386_1 322 RNSVLEMIQKSD-TDTPLILCGHSAGGWLARALLRRYPELEMSITAVVTL 370
                 556667777555.69******************************99987 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-06    0.0014      18     100 ..      79     171 ..      71     173 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.2e-06
                 HTEEEEEEEECTS--E---HHHHH.......HHTTHHHCEECEEEEEEEEESSTTEEEEE..EEEE-E.ESBS--EEEEEEEEEEEE.----EE CS
   PF12680.2  18 allapdvvwedpfgelrGrealra.......ffrallaafpdlrfevedviadgdrvvvr..wtvtgt.ipptgrgvtvrgvdvfrv.edGkIv 100
                 +l+a+d+++ dp+ +++G + + +       f++++    +++r++++d+++d ++ +v+  w++ g+   p   +++++g + f+  +dG+I+
  MMETSP0890-20130614|5386_1  79 ELYAEDCIFSDPTLKFEGLATFERnleslepFLKRFA-PASQRRVSLVDLFVDSEKKFVEacWRMVGDlALPWRPRLELDGRTRFTYgDDGRII 171
                 89**********8899999999996665555666664.79999*******999998888767****9999999999999999999999999996 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.8   7.8e+03     132     164 ..      15      49 ..       9      70 .. 0.58
   2 ?   -2.9   0.0         5   5.7e+03     153     209 ..     101     166 ..      92     176 .. 0.62
   3 !   16.5   0.0   5.9e-06    0.0067      54     103 ..     324     373 ..     318     397 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6.8
                 CCCCTTCCHCCHHHHHHHHHHHHHHTCC-..-CTS CS
  PF00975.15 132 pealledeellsellpalradkralenys..irpi 164
                 +e++ +  + l++ l+a++   + +++ +  +r++
  MMETSP0890-20130614|5386_1  15 YERSSAIAKTLVKSLTAVVTSTASVPKQRerKRSK 49 
                 56666666666666666666666666665333333 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5
                 HHHHTCC-......-CTSECCHHCEEEEEEGCS-SCCCCCCCCC-S...TTTTCSSSEEEEEE--- CS
  PF00975.15 153 kralenys......irpiaaqkvdatlfygsddplneldtllaaar...wreytpgafsvhvlpgd 209
                 +r+le+ +      ++++++ +    lf+ s+ ++ e+ + +  +    wr +  ++ ++++  gd
  MMETSP0890-20130614|5386_1 101 ERNLESLEpflkrfAPASQRRVSLVDLFVDSEKKFVEACWRMVGDLalpWRPRLELDGRTRFTYGD 166
                 445555444444444444444455677777777777777766666677788888888887777766 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 5.9e-06
                 HHHHHHHHH--S-SEEEE------HHHHHHHHHHHHHS--CEEEEEESS- CS
  PF00975.15  54 eyaealrqiqpegPyaLfGySlGGllAfevArqLerqgeevasLiliDap 103
                  ++e +++ +++ P+ L G+S+GG lA ++ r+  +  +++ +++  +ap
  MMETSP0890-20130614|5386_1 324 SVLEMIQKSDTDTPLILCGHSAGGWLARALLRRYPELEMSITAVVTLGAP 373
                 57899**********************99999988888888888888754 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.3e-06    0.0071      40     106 ..     311     375 ..     283     408 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHHHHHHHHHHHHHHST.TSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S-- CS
  PF01764.20  40 leayksareqvlkelkrllekyp.dykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrv 106
                  +ay +  e+ + ++ ++++k   d+ ++++GHS GG lA  +   + e +    s   v+t+G+P  
  MMETSP0890-20130614|5386_1 311 TKAYDWYLETARNSVLEMIQKSDtDTPLILCGHSAGGWLARALLRRYPELE---MSITAVVTLGAPHY 375
                 356667778888888886666664688**********88754444443333...46888999999976 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.2e-05     0.037      55     105 ..     313     369 ..     307     410 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.2e-05
                 HHHHHHHTT.......TTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEE CS
   PF07859.8  55 alrwlaeqa.......welgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvl 105
                 a+ w +e+a        +++     ++++G SaGG La a+++r  +  e +i+a+v 
  MMETSP0890-20130614|5386_1 313 AYDWYLETArnsvlemIQKSDTDTPLILCGHSAGGWLARALLRRYPEL-EMSITAVVT 369
                 6666666666666653244555669*****************999887.555555443 PP

>> PF11288.3  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.031      87     115 ..     328     356 ..     298     398 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
   PF11288.3  87 ylaeenegrpiiLaGhsQGsllllrLlre 115
                  +++ + ++p+iL Ghs G+ l++ Llr+
  MMETSP0890-20130614|5386_1 328 MIQKSDTDTPLILCGHSAGGWLARALLRR 356
                 578899*********************97 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.048      74     125 ..     325     376 ..     285     382 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.2e-05
   PF11187.3  74 Ylnkileesegk.iylgGHSKGGnlAvyaaanaeddlqeriskiysfDgpGls 125
                  l++i + + ++ ++l+GHS GG lA  a+++  ++l+  i++++++ +p ++
  MMETSP0890-20130614|5386_1 325 VLEMIQKSDTDTpLILCGHSAGGWLAR-ALLRRYPELEMSITAVVTLGAPHYP 376
                 3444444444435*************7.67777999999****9999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.94
# Mc/sec: 1213.47
//
Query:       MMETSP0890-20130614|5387_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-50  170.5   0.1    2.4e-49  166.4   0.0    2.2  2  PF02747.10 Proliferating cell nuclear antigen, C-terminal domain
    2.1e-47  159.6   0.9    3.6e-47  158.8   0.6    1.4  1  PF00705.13 Proliferating cell nuclear antigen, N-terminal domain
    4.9e-14   51.6   1.2    2.4e-13   49.3   0.8    1.8  1  PF02144.11 Repair protein Rad1/Rec1/Rad17
    7.1e-07   28.3   0.0    0.00015   20.6   0.0    2.2  2  PF04005.7  Hus1-like protein
    1.5e-06   27.4   0.1    2.5e-06   26.6   0.1    1.3  1  PF04139.8  Rad9


Domain annotation for each model (and alignments):
>> PF02747.10  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.059   1.6e+02      21     105 ..      30     109 ..      17     119 .. 0.66
   2 !  166.4   0.0   8.6e-53   2.4e-49       1     128 []     142     272 ..     142     272 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.059
                 HHHHHTTT-SEEEEEECTTEEEEEE--------EEE--BCCTTSCCCEBEEEESS-EEEEEECHHHHHHCGGGCC-SEEEEEEET CS
  PF02747.10  21 icrDlsqlsdsvvisvtkegvkfsasGdiGtgnivlkqttdvdkeeeavkiemkepvtltfalrYlnsftkatpLservtlslss 105
                 i+  + +l  + +i +t  g+  +a     ++ + l  ++ + ++  + + + +++vtl   l  l+++ k +   + vtl+  +
  MMETSP0890-20130614|5387_1  30 IVDSIKDLVTDANIEITETGLSLQAMD---SSHVSL--VSLSMHQHLFGHYRCDKAVTLGLNLPNLAKILKCAGNDDSVTLKAMD 109
                 555555555555566666665555532...222222..23333455566677889999999999999999999999999987655 PP

  == domain 2    score: 166.4 bits;  conditional E-value: 8.6e-53
                 ----S--SEEEEEEHHHHHHHHHHHTTT-SEEEEEECTTEEEEEE--------EEE--BCCTTSCCCEBEEEESS-EEEEEECHHHHHHCGGGCC-SEEEEEEETTSEEEEEE--TT...--EEEEEE-BC CS
  PF02747.10   1 gipeseydavvklpsaefaricrDlsqlsdsvvisvtkegvkfsasGdiGtgnivlkqttdvdkeeeavkiemkepvtltfalrYlnsftkatpLservtlslssevPlvveykikd...vgllkyylapk 128
                 gip++ey+++ kl+saef+ri+rD++ l+d+ +isvtkeg+kfs +Gd+G+g+i+l+q+++vdke++ ++++m+epv+l falrYln+ftkatpL +rv+ls+s evP+vv y++ +    g l +ylapk
  MMETSP0890-20130614|5387_1 142 GIPDQEYQTTTKLSSAEFQRIVRDMAVLGDTCNISVTKEGIKFSVNGDMGNGSIQLRQNSSVDKEDDQIEVQMEEPVDLSFALRYLNFFTKATPLNTRVSLSMSPEVPVVVSYNVGEedgQGSLSFYLAPK 272
                 8*****************************************************************************************************************97623357889999986 PP

>> PF00705.13  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.6   1.3e-50   3.6e-47       1     123 [.      16     138 ..      16     140 .. 0.96

  Alignments for each domain:
  == domain 1    score: 158.8 bits;  conditional E-value: 1.3e-50
                 SEEEEESSHHHHHHHHHHHCTTBSEEEEEES----EEEEE-TTSSEEEEEE---TTSSEEEESS-EEE-EEHHHHHHHHTT--TSSEEEEEEETTSSEEEEEEEESSSSEEEEEEEEEE--S- CS
  PF00705.13   1 mlearleqasllkkvlealkdlvneanfdcsesGislqalDsshvaLvslelrsegfekyrCDrnlslgvnltslskilkcagnedivtlkaednadtlalvfesekkekvkesdlklklidl 123
                 m+ea l +a llkk+++++kdlv++an++++e+G+slqa+Dsshv+Lvsl ++++ f +yrCD+ ++lg+nl +l+kilkcagn+d+vtlka d+ + l++ fes+ +e+ +e+ lkl+ id 
  MMETSP0890-20130614|5387_1  16 MFEATLDKAQLLKKIVDSIKDLVTDANIEITETGLSLQAMDSSHVSLVSLSMHQHLFGHYRCDKAVTLGLNLPNLAKILKCAGNDDSVTLKAMDDGELLTIAFESPGQERHSEFALKLMEIDS 138
                 9***************************************************************************************************************77777777665 PP

>> PF02144.11  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.8   8.9e-17   2.4e-13       1     263 [.      16     244 ..      16     247 .. 0.92

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 8.9e-17
  PF02144.11   1 vfsavlsnvreLatlLksia.fkdkalvqisedGlkfiv.eenrvlqaaafldkalFssYtfnnaeadeedeedeeeesvsfeisLsallecLnifgkadssskeasssrapkvasssakatscklsYkgeGsPLvliLeeagvtttcelsTyepe.edldleldrqevvlkvilkselLhsalteLdatnskklkilassekapylalsasgdlgsskvefpkekdvl...ekfevseeevsqssYkfallkkaakalrlssKvslrm 263
                 +f+a+l++++ L ++  si  ++++a ++i+e+Gl++ + + ++v  ++++++++lF  Y+               ++ v++ ++L  l++ L+  g+ ds                      ++l+ +++G+ L++ +e  g + + e+    +e ++++l + +qe + ++ l s+ ++ +++++     ++++i++++e    +++s +gd+g+ ++++ ++++v    +++ev++ee +  s+ + +l+  +ka+ l + vsl m
  MMETSP0890-20130614|5387_1  16 MFEATLDKAQLLKKIVDSIKdLVTDANIEITETGLSLQAmDSSHVSLVSLSMHQHLFGHYRC--------------DKAVTLGLNLPNLAKILKCAGNDDS----------------------VTLKAMDDGELLTIAFESPGQERHSEFALKLMEiDSENLGIPDQEYQTTTKLSSAEFQRIVRDMAVL-GDTCNISVTKE---GIKFSVNGDMGNGSIQLRQNSSVDkedDQIEVQMEEPVDLSFALRYLNFFTKATPLNTRVSLSM 244
                 59*****************746779************75278899999**************..............789*****************99887......................8999**************9999999998888888899999***************************.**********7...8*********************8622256888898888888********************998 PP

>> PF04005.7  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.6e-08   0.00015       3     102 ..      17     110 ..      16     130 .. 0.88
   2 !    5.7   0.0    0.0019       5.3      10      49 ..     156     196 ..     148     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.6e-08
   PF04005.7   3 FkaklrdietlkkvlqalsslakecilrLtpeklrfiiiekaaqgvqvwaqlevdllFeeyeieSaseneInlevdldqLlraLksaenansvklrLtkk 102
                 F a+l+++++lkk++ +++ l  ++ + +t++ l++  +  + + v++++   ++ lF +y+++      ++l ++l +L+++Lk a n  sv+l+    
  MMETSP0890-20130614|5387_1  17 FEATLDKAQLLKKIVDSIKDLVTDANIEITETGLSLQAM--DSSHVSLVSLSMHQHLFGHYRCDK----AVTLGLNLPNLAKILKCAGNDDSVTLKAMDD 110
                 7899999********************************..899999999999999*******84....579*****************99999986555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0019
   PF04005.7  10 ietlkkvlqalsslakecilrLtpeklrfiiiek.aaqgvq 49 
                   +++++++ ++ l+ +c + +t+e + f ++++  ++ +q
  MMETSP0890-20130614|5387_1 156 SAEFQRIVRDMAVLGDTCNISVTKEGIKFSVNGDmGNGSIQ 196
                 6789****************************994444455 PP

>> PF04139.8  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   9.2e-10   2.5e-06       1     225 [.      27     243 ..      27     260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 9.2e-10
   PF04139.8   1 laralqclsrigdelvleisedglelrtvnssrSayalflfkksfFqkylaekevsdqirckilvKsvlsvfrslsakektvekikisidekksrliiqllck.hgvtkthslsleeseslqavfdketcpsklrissrvLsdllehfsssleeitlelakervllksyteeekdnkkalstelsideee.FeqyqlqedveitlslKefrailvfaeslslslala 225
                 l++++ ++  +  + ++ei+e+gl+l++++ss+ + +++++++++F +y    + ++ + + +++  + ++++++     + + ++++  ++   l i +    ++   ++ l+l e +s ++ +  ++ + + + ss  ++ ++  ++   ++  ++++ke ++++   + ++++  +l+ + s+d+e+   ++q++e v++++ l+ +  + + a  l++ ++l+
  MMETSP0890-20130614|5387_1  27 LKKIVDSIKDLVTDANIEITETGLSLQAMDSSHVSLVSLSMHQHLFGHY----RCDKAVTLGLNLPNLAKILKCAG----NDDSVTLKAMDDGELLTIAFESPgQERHSEFALKLMEIDSENLGIPDQEYQTTTKLSSAEFQRIVRDMAVLGDTCNISVTKEGIKFSVNGDMGNGS-IQLRQNSSVDKEDdQIEVQMEEPVDLSFALRYLN-FFTKATPLNTRVSLS 243
                 568888888888999**********************************....77777777777789999**9998....55778999988888999999875145556788888999999999999***************************************9888888888.99********9651558999999*******9887.555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.82
# Mc/sec: 806.58
//
Query:       MMETSP0890-20130614|5395_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00019   21.0   1.4        7.3    7.1   0.0    4.9  4  PF13504.1  Leucine rich repeat
    0.00067   19.1   1.5        1.2    8.7   0.0    3.0  2  PF12799.2  Leucine Rich repeats (2 copies)
     0.0073   16.1   6.9       0.69   10.0   0.0    4.5  4  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.011   15.4   5.4        9.3    6.6   0.1    4.8  4  PF00560.28 Leucine Rich Repeat
      0.037   13.6   2.8       0.34   10.5   0.1    3.3  3  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1      0.02        53       2      12 ..      51      61 ..      50      74 .. 0.80
   2 ?    3.9   0.0      0.03        83       2      15 ..      84      97 ..      83      99 .. 0.82
   3 ?   -0.9   0.0       1.2   3.2e+03       4      13 ..     149     159 ..     146     163 .. 0.79
   4 !    7.1   0.0    0.0027       7.3       1      12 [.     177     188 ..     177     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.02
   PF13504.1  2 nLkeLdLsgnr 12
                 L+eL++ +++
  MMETSP0890-20130614|5395_1 51 GLRELSIYNCN 61
                69*******96 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.03
   PF13504.1  2 nLkeLdLsgnrLts 15
                 L  L++sgnrL+ 
  MMETSP0890-20130614|5395_1 84 ALNALSISGNRLDY 97
                6778*******986 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1.2
   PF13504.1   4 keLdLsgnr.L 13 
                 k L+L++n+ +
  MMETSP0890-20130614|5395_1 149 KILSLACNPqI 159
                 679***99755 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0027
   PF13504.1   1 pnLkeLdLsgnr 12 
                 ++L++LdLs+++
  MMETSP0890-20130614|5395_1 177 HRLERLDLSDCG 188
                 69********96 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.3   0.00074         2       2      38 ..      51      97 ..      50     106 .. 0.69
   2 !    8.7   0.0   0.00043       1.2       3      36 ..     148     189 ..     146     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00074
   PF12799.2  2 nLevLdLsnN.........nIkd.lppelanLpnLktLnLsnNpisd 38
                 L++L++ n+          ++  l+ + ++Lp L  L++s+N+++ 
  MMETSP0890-20130614|5395_1 51 GLRELSIYNCnagpstlscLLTAlLERSSGGLPALNALSISGNRLDY 97
                6888888888444443333355523335578*************975 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00043
   PF12799.2   3 LevLdLsnN.nIkd..lppelanLpn.....LktLnLsnNpi 36 
                  + L+L+ N +I+d  l +  +nL++     L+ L+Ls + +
  MMETSP0890-20130614|5395_1 148 IKILSLACNpQIQDeaLAAIMKNLSSskthrLERLDLSDCGC 189
                 578*****96699777999659998555666*******9865 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3      0.06   1.6e+02       1      18 [.      49      66 ..      49      72 .. 0.78
   2 ?    0.6   0.0      0.29   7.9e+02       4      18 ..      85      99 ..      82     105 .. 0.77
   3 ?    2.6   0.0     0.062   1.7e+02       5      22 ..     149     167 ..     147     173 .. 0.83
   4 !   10.0   0.0   0.00025      0.69       3      22 ..     178     197 ..     176     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.06
   PF13516.1  1 lknLtsLdLsnNqigdeG 18
                ++ L++L + n++ g   
  MMETSP0890-20130614|5395_1 49 CTGLRELSIYNCNAGPST 66
                788*********976555 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.29
   PF13516.1  4 LtsLdLsnNqigdeG 18
                L  L +s+N ++ +G
  MMETSP0890-20130614|5395_1 85 LNALSISGNRLDYIG 99
                66799****987554 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.062
   PF13516.1   5 tsLdLsnNq.igdeGlsaL 22 
                 + L L  N+ i de l a+
  MMETSP0890-20130614|5395_1 149 KILSLACNPqIQDEALAAI 167
                 6799999967*****9888 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00025
   PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  L+ LdLs+++ g   +saL
  MMETSP0890-20130614|5395_1 178 RLERLDLSDCGCGPLAASAL 197
                 69************999998 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.24   6.7e+02       2      11 ..      52      61 ..      51      61 .. 0.92
   2 ?    4.1   0.0     0.023        62       2      16 ..      85      99 ..      84     106 .. 0.82
   3 ?    2.3   0.0     0.085   2.3e+02       3      15 ..     149     167 ..     147     174 .. 0.72
   4 ?    6.6   0.1    0.0034       9.3       1      12 [.     178     189 ..     178     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.24
                ESEEEETSSB CS
  PF00560.28  2 LeeLdLsgNn 11
                L+eL++ ++n
  MMETSP0890-20130614|5395_1 52 LRELSIYNCN 61
                9*******97 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.023
                ESEEEETSSBCBCHH CS
  PF00560.28  2 LeeLdLsgNnltslp 16
                L  L++sgN+l ++ 
  MMETSP0890-20130614|5395_1 85 LNALSISGNRLDYIG 99
                5679*******9875 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.085
                 SEEEETSS.BCBC.....H CS
  PF00560.28   3 eeLdLsgN.nlts.....l 15 
                 ++L+L +N ++++     +
  MMETSP0890-20130614|5395_1 149 KILSLACNpQIQDealaaI 167
                 79********996565553 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0034
                 TESEEEETSSBC CS
  PF00560.28   1 nLeeLdLsgNnl 12 
                 +Le+LdLs++  
  MMETSP0890-20130614|5395_1 178 RLERLDLSDCGC 189
                 59********65 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   3.5e+03      49      59 ..      50      60 ..      47      61 .. 0.45
   2 ?   10.5   0.1   0.00012      0.34      11      40 ..      69      98 ..      66     110 .. 0.79
   3 ?    1.4   0.1     0.085   2.3e+02      24      34 ..     176     186 ..     147     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.3
   PF13855.1 49 psLreLnLsgN 59
                + LreL++ ++
  MMETSP0890-20130614|5395_1 50 TGLRELSIYNC 60
                34444444443 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00012
   PF13855.1 11 NrlkvipdgaFkglsnLkvLdLsgnnlksi 40
                + l+ + +++ +gl+ L  L++sgn+l  i
  MMETSP0890-20130614|5395_1 69 CLLTALLERSSGGLPALNALSISGNRLDYI 98
                678888888889999999999999998755 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.085
   PF13855.1  24 lsnLkvLdLsg 34 
                  ++L+ LdLs+
  MMETSP0890-20130614|5395_1 176 THRLERLDLSD 186
                 35666666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 992.78
//
Query:       MMETSP0890-20130614|5393_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   40.6   7.1    2.8e-10   39.7   4.9    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.3e-09   37.5   9.1    1.3e-09   37.5   6.3    2.0  2  PF13639.1  Ring finger domain
    2.4e-07   30.1   8.5    4.9e-07   29.2   5.9    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00013   21.4   5.8     0.0003   20.2   4.0    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0071   15.8   2.3      0.015   14.7   1.6    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
       0.64    9.4   2.9         15    5.0   0.1    2.4  2  PF04423.9  Rad50 zinc hook motif
        1.8    8.0   8.2        6.2    6.3   5.7    1.9  1  PF02891.15 MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   4.9   1.4e-13   2.8e-10       2      45 ..     224     279 ..     223     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.4e-13
   PF13923.1   2 rfsCpiCleelenpviltpCgHlyCkkCieqwleks............kkkCPiCr 45 
                 +++CpiCl++l ++++ tpCgH  C +C+ +  + +            + +CP+Cr
  MMETSP0890-20130614|5393_1 224 SDVCPICLSDLDECAARTPCGHFACAECLARTRRMTrtninqrtepfrEMRCPLCR 279
                 689***************************988877778887777766668****9 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.1   2.1e+03      14      27 ..     133     146 ..     126     147 .. 0.70
   2 !   37.5   6.3   6.5e-13   1.3e-09       2      46 .]     226     281 ..     225     281 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.1
   PF13639.1  14 eevvrlpCgHvfHe 27 
                 +  +++pC    H+
  MMETSP0890-20130614|5393_1 133 SYWRVCPCDDNTHR 146
                 55678889888776 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 6.5e-13
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssn.............sCPlCrkp 46 
                 +C+iCl++l  +e++ r+pCgH+ ++eCl++  r+ +             +CPlCr+p
  MMETSP0890-20130614|5393_1 226 VCPICLSDL--DECAARTPCGHFACAECLARTRRMTRtninqrtepfremRCPLCRAP 281
                 8********..68999**************98755322346678999999******86 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   5.9   2.5e-10   4.9e-07       2      46 ..     224     281 ..     223     283 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.5e-10
   PF13920.1   2 kktCvvCler.eadvlllpCgHlclCeeCaerllk.............rkkkCpiCrsp 46 
                 ++ C++Cl+  +++++ +pCgH  +C+eC  r ++             r+++Cp+Cr+p
  MMETSP0890-20130614|5393_1 224 SDVCPICLSDlDECAARTPCGHF-ACAECLARTRRmtrtninqrtepfREMRCPLCRAP 281
                 578*****9857888999*****.*********99**********************98 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   4.0   1.6e-07    0.0003       1      41 []     227     278 ..     227     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.6e-07
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCS...........T-----TTT CS
  PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilks...........rkkvkCPlC 41 
                 CpiCl+ + e    ++C+H  C +C+ + ++             ++  CPlC
  MMETSP0890-20130614|5393_1 227 CPICLSDLDECAARTPCGHFACAECLARTRRMtrtninqrtepFREMRCPLC 278
                 **********999*************99999888898887666444559999 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.6   7.9e-06     0.015       7      57 ..     222     276 ..     217     277 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.9e-06
                 XXXX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHH...HHHTTT-....-B--- CS
   PF13445.1   7 fhsifaCpiske.qsteqnpPvvLpCGhvisrealeklak...ggrsnkg....rfkCP 57 
                 f+s+ +Cpi+   +   ++   + pCGh  + e+l +  +   ++ ++++    +++CP
  MMETSP0890-20130614|5393_1 222 FESD-VCPICLSdL---DECAARTPCGHFACAECLARTRRmtrTNINQRTepfrEMRCP 276
                 4666.8******99...57899*************998875543332222333468887 PP

>> PF04423.9  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.016        31      21      32 ..     225     236 ..     222     240 .. 0.83
   2 ?    5.0   0.1    0.0075        15      22      30 ..     274     282 ..     262     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.016
                 ---S-------H CS
   PF04423.9  21 gcCPvCgreLde 32 
                 ++CP+C ++Lde
  MMETSP0890-20130614|5393_1 225 DVCPICLSDLDE 236
                 49********98 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0075
                 --S------ CS
   PF04423.9  22 cCPvCgreL 30 
                 +CP+C  ++
  MMETSP0890-20130614|5393_1 274 RCPLCRAPF 282
                 9****9998 PP

>> PF02891.15  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.7    0.0032       6.2       4      49 ..     226     280 ..     224     281 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0032
  PF02891.15   4 kCplslsrisiPvrgekCkHiqCfdlksflesnertkt.........WnCPvCsk 49 
                  Cp++ls +   +  + C H+ C ++ +  + + rt+           +CP+C++
  MMETSP0890-20130614|5393_1 226 VCPICLSDLDECAARTPCGHFACAECLARTRRMTRTNInqrtepfreMRCPLCRA 280
                 6*********999999**********99988888877777888999999****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:01.04
# Mc/sec: 940.11
//
Query:       MMETSP0890-20130614|5397_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-33  115.8   0.1    1.7e-32  112.6   0.1    1.9  1  PF00144.19 Beta-lactamase


Domain annotation for each model (and alignments):
>> PF00144.19  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.1   1.2e-36   1.7e-32      19     312 ..      10     294 ..       7     306 .. 0.86

  Alignments for each domain:
  == domain 1    score: 112.6 bits;  conditional E-value: 1.2e-36
                 EEEE---EEEEEE.....BTTTTBESSTTSBEE-GGTHHHHHHHHHHTTTCTGG..TTSBGGGGSTTG.SGTTCSCBHHHHHTTHHHH.BSS.HTTCHSHHH....................HHHHHHHHHG..SS....EE.--TTTHHHHHHHCCHHHHHHHHHHHHHHTTTTTTST.TEESSHHGGGGGGBEEEC.CTT....EE....HHHH......EEEHHHHHHHHHHHHHTGGGSSSHHHHHH.........HCHCHSEEEE--SEEE--EEESSEEHHHHHSEEEEE..SSTCEEEEEEGGGTEEEEEEESSS CS
  PF00144.19  19 vavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada..................aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmk.dtelgppesgdprdaagytgngpearappanlpaeaegagglistardlarflglalegglllsaetlaql.........taklssgttrpagiraglglGwvladktgapgtfghtGggygtyvfvdpeanlvvavltnrd 312
                 ++++++gk+v++k++G         +++d +++ +Sv+Ktft+++   lv eG l+ +++  +y+Pe+ ++++g+ ++r+ l++t Gl + +++ +++ +   +                  ++  ++l+t +  +++G +++Y  ++ +++g ++ +vt +s+ ++l+e+i++pLg + d ++  + +g +                          +gg  +++rd+a f+++ +++g  +++++l +           +++ s  +  ++ + ++   w++++    +g+f   G  +g+ +++dp a++v++ +++  
  MMETSP0890-20130614|5397_1  10 ILILHKGKIVYEKYFG--------ELDPDGVHAAMSVSKTFTGTLGGLLVAEGILEENKRAVEYVPELENSAFGDASIREILDMTTGLKYSEDYSDPKAEI--WtfsaagnplpkpanytgpRSYYEYLETVQKSGEHGDAFAYKTINTDVMGWIVSRVTNKSIPEILSERIWKPLGTNyDGYFQIDGAGIAFA------------------------GGGFNANLRDMAMFGEMIRNKGYFNGQQILPRVliedimkggDQEAFSKSVYSSLENWSYRNMWWITHNE--HGAFAARG-VHGQTIYIDPTAEMVLVRFASHP 294
                 6899************........****************************************************************8774444444443..268999******************************************************************9655155555555553333........................3556***********7777777777777777777666667779999999999999999998889998766..569*****.****************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1061.72
//
Query:       MMETSP0890-20130614|5396_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-34  116.9   0.1    3.8e-34  115.9   0.1    1.5  1  PF01191.14 RNA polymerase Rpb5, C-terminal domain
    2.6e-23   82.1   0.7    4.6e-23   81.3   0.5    1.4  1  PF03871.9  RNA polymerase Rpb5, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01191.14  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.1   5.6e-38   3.8e-34       1      74 []     146     219 .]     146     219 .] 0.99

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 5.6e-38
                 ---TTSSS--B--B--TTTHHHHHHH----TTSSS---TT-TTTTTTT------BEEEE--S----EEEE---- CS
  PF01191.14   1 vnitkHelvPkHellseeekkkllkeykikeeqLPrilstDPiarylglkrgdvvkIiRksetageyvtYRlvv 74 
                 v+it+H+lvP H+ ls+++k kll++yk+ke+qLPri+++DP+ary+glk+gdvvkI+R+setag+y+tYR+++
  MMETSP0890-20130614|5396_1 146 VDITEHKLVPTHQPLSPDDKAKLLDRYKLKETQLPRIQKSDPVARYFGLKTGDVVKITRPSETAGKYITYRICI 219
                 79*********************************************************************996 PP

>> PF03871.9  RNA polymerase Rpb5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.5   6.7e-27   4.6e-23       6      91 ..      20     102 ..      15     104 .. 0.95

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 6.7e-27
   PF03871.9   6 elarlfrvrrTvlemlrDRgYlvaeeeinlsleeFkekygdeegspkrsklsisaerkedesgkilvfFceeekvgvktirtfvek 91 
                 e+  l+rvrrTvl+mlr R Y+++++  n++++eF ++yg+   +p r++++i a +++d  ++i++fF+e+ekvgvk i+ +   
  MMETSP0890-20130614|5396_1  20 EAMSLYRVRRTVLKMLRKRHYEIEDDHFNMDINEFINRYGE---KPVRKDMTIMADHETDADDSIVIFFAEDEKVGVKPIKGYSDF 102
                 6789*************************************...8************************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 656.00
//
Query:       MMETSP0890-20130614|5399_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-47  162.0   0.0    1.9e-47  161.2   0.0    1.5  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   1.4e-51   1.9e-47       4     144 ..     319     456 ..     316     459 .] 0.88

  Alignments for each domain:
  == domain 1    score: 161.2 bits;  conditional E-value: 1.4e-51
  PF00160.16   4 ietsskGrivieLfedkaPktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkgangeekkagges.....ipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekieavetde..kp 144
                 ++t +kG+iv+eL+++ +PktvenF  la++g+Ydg +fhr+i++fmiq+Gdp+g+g+       gges     ++dEi+ ++l+h  + +l+ma+ g  pn+ngsqFfIt+ ++p+l+gk+tv+GkVv+gm vv++ie+ +t++  kp
  MMETSP0890-20130614|5399_1 319 LHT-TKGDIVLELYPTDCPKTVENFCGLARKGYYDGHIFHRTIRNFMIQTGDPNGDGT-------GGESiwgaeFEDEIR-PHLNHdSPFVLSMANAG--PNTNGSQFFITTIPTPWLNGKHTVWGKVVQGMTVVKEIESAPTNRfdKP 456
                 567.49************************************************9987.......333223333*****6.66777688******998..7**************************************9988876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.74
# Mc/sec: 1486.39
//
Query:       MMETSP0890-20130614|5405_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-17   61.0   0.0    1.1e-16   60.6   0.0    1.2  1  PF13847.1  Methyltransferase domain
      5e-12   45.6   0.0    7.1e-12   45.2   0.0    1.2  1  PF13489.1  Methyltransferase domain
    1.1e-10   41.7   0.0    2.3e-10   40.7   0.0    1.6  1  PF08241.7  Methyltransferase domain
    7.2e-10   39.3   0.0    1.4e-09   38.3   0.0    1.5  1  PF12847.2  Methyltransferase domain
    2.6e-09   37.2   0.0    1.2e-08   35.1   0.0    2.1  2  PF13649.1  Methyltransferase domain
    1.4e-06   28.5   0.0    3.2e-06   27.4   0.0    1.6  1  PF08242.7  Methyltransferase domain
    3.9e-06   26.7   0.0    5.8e-06   26.2   0.0    1.4  1  PF13659.1  Methyltransferase domain
    2.5e-05   23.4   0.0    3.3e-05   23.0   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
     0.0017   17.4   0.0     0.0024   16.9   0.0    1.2  1  PF03848.9  Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.017   14.1   0.0      0.021   13.8   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
      0.021   14.2   0.0      0.044   13.1   0.0    1.5  2  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.044   13.6   0.0      0.064   13.1   0.0    1.3  1  PF01728.14 FtsJ-like methyltransferase
        0.1   12.1   0.0       0.17   11.4   0.0    1.4  1  PF13679.1  Methyltransferase domain
       0.12   11.3   0.0       0.22   10.4   0.0    1.4  1  PF02390.12 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.1e-19   1.1e-16       4     112 ..      86     195 ..      83     256 .. 0.85

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 1.1e-19
   PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieelekl.le.esfDlvisnevlnalad.pqkvlkeiervlkpggrlivesps 112
                 g++vlDlG+G+G+ +le+a++  ++a  +G+D ++  i++A+e+ ++     ++F++g++++l+++ le ++fD+v+s+  ++++   ++ ++ +++rv+ p ++l+v++  
  MMETSP0890-20130614|5405_1  86 GTTVLDLGAGKGRACLEIAQL--TNASCFGLDLTPANIKRANELKSQYPELSLRFEVGSFTNLPQSvLEfAPFDIVFSQVSFCHVHLqLDTIFTQVKRVMGPTSYLLVNDYL 195
                 789****************54..699*****************655444449***************************988888752677889**************9975 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   7.2e-15   7.1e-12       7     159 ..      71     235 ..      64     238 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 7.2e-15
   PF13489.1   7 reladllerllarlkpggrvLDiGcGtGillellaen.gfdvtgvDpspaaigk............akqaqksqfdeedaaepag.................kfdlivarevlehvp.dpeellrqiaellkpgGylllstpnaslasdeafakw.dylvprgthi.sffsaeslkelleeaGfei 159
                  +l ++  +l+ +  pg +vLD+G+G+G+ + ++a+  ++++ g D+ pa+i++                              +                 +fd++ +  +++hv+ +++  ++q+++ + p  yll+ +++ s  +d+  ++  +y  +r  h   ++s++++++ +  aG+ +
  MMETSP0890-20130614|5405_1  71 TALTEKMMALG-KVGPGTTVLDLGAGKGRACLEIAQLtNASCFGLDLTPANIKRanelksqypelsL-----------------RfevgsftnlpqsvlefaPFDIVFSQVSFCHVHlQLDTIFTQVKRVMGPTSYLLVNDYLGS--EDKYSDDTkKYVFQR-LHFeTLYSPSQWRKTADAAGLVL 235
                 44556666666.489999**********9999997774779********999876655555554432.................033333333444566677***************99***********************975..455555554677777.6666****************976 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.3e-13   2.3e-10       1      94 [.      90     190 ..      90     191 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.3e-13
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle...lvvadaeel...pfednsfDvvvssevlehl.edpekalkeiaRvLkpgGllv 94 
                 Ld+G+G+g+++  +a+  +a+++g+Dl ++++++a+e +++       + v+++++l    +e + fD+v+s+  ++h+  +++ ++ +++Rv+ p  +l+
  MMETSP0890-20130614|5405_1  90 LDLGAGKGRACLEIAQLTNASCFGLDLTPANIKRANELKSQYPELslrFEVGSFTNLpqsVLEFAPFDIVFSQVSFCHVhLQLDTIFTQVKRVMGPTSYLL 190
                 8********************************999988887544899*********44336678**************9999***********9999886 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.5e-12   1.4e-09       1     110 [.      85     192 ..      85     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.5e-12
   PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsller..fDavllkg.ltldallaldeprrvlealpkllkpggrlvie 110
                 +g ++lDlG+G G+ +le+a+l  +a  +g+D+ ++++++a+e   s+  e  +++  g + +  +s+le   fD+v+    +++   l+l   + ++ ++++ + p ++l+++
  MMETSP0890-20130614|5405_1  85 PGTTVLDLGAGKGRACLEIAQL-TNASCFGLDLTPANIKRANELK-SQYPELSLRFEVGSFtNLPQSVLEFapFDIVFSQVsFCHV-HLQL---DTIFTQVKRVMGPTSYLLVN 192
                 5789*****************7.9******************998.889999999******999999999999******9866554.3333...56699999999999999987 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.2e-11   1.2e-08       1      98 [.      89     184 ..      89     187 .. 0.86
   2 ?   -1.4   0.0       2.7   2.7e+03      77      97 ..     214     235 ..     199     257 .. 0.69

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.2e-11
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpf...eegefdlvvcaglslehlspkqlealleeiarvlk 98 
                 +ldlG G Gr   ++++      ++++ g+D+++  ++ a+e  s+ ++    +f ++++++lp+   e ++fd+v++   s++h++  ql  ++ ++ rv  
  MMETSP0890-20130614|5405_1  89 VLDLGAGKGRACLEIAQLT----NASCFGLDLTPANIKRANELKSQ-YPelSLRFEVGSFTNLPQsvlEFAPFDIVFS-QVSFCHVH-LQLDTIFTQVKRVMG 184
                 79**************985....59******************965.4445*************8665667*******.56699987.789999998888865 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.7
   PF13649.1  77 sleh.lspkqlealleeiarvl 97 
                  +e  +sp+q+++  +++  vl
  MMETSP0890-20130614|5405_1 214 HFETlYSPSQWRKTADAAGLVL 235
                 3555577777777766666555 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.3e-09   3.2e-06       1      96 [.      90     186 ..      90     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3.3e-09
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg....ssfDvvvasnvlhhl.kdirevldnirklLkpg 96 
                 L++G+G G++  ++++   +++  g+D+ p+ i++a e  +++++ +  +     ++l +        + fD+v++   + h+  +++ ++ ++++++ p 
  MMETSP0890-20130614|5405_1  90 LDLGAGKGRACLEIAQL-TNASCFGLDLTPANIKRANELKSQYPELSLRFEVGSFTNLPQ---SvlefAPFDIVFSQVSFCHVhLQLDTIFTQVKRVMGPT 186
                 8*************999.999999*********888888888887665555555555554...45559********977777779999*******999885 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   5.9e-09   5.8e-06       2      84 ..      87     169 ..      86     257 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5.9e-09
   PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdla.ellragsfdlvvtnpPygpra 84 
                  +vld+g+G G   l  ++l +a  +g++l p+ ++ a++  ++++   ++r+ +g++++l+ ++l  ++fd+v++ + +++ +
  MMETSP0890-20130614|5405_1  87 TTVLDLGAGKGRACLEIAQLTNASCFGLDLTPANIKRANELKSQYPE-LSLRFEVGSFTNLPqSVLEFAPFDIVFSQVSFCHVH 169
                 68********************************9999988777643.468*********98567888************9643 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.4e-08   3.3e-05      52     186 ..      75     210 ..      49     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.4e-08
                 HHHHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT---......--SEEEE---GGGT--TCHHHHHHHHHHCS-----EEEEEEE---HHHHCC----THHHH CS
  PF02353.15  52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevklldyedlde......kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfid 186
                 + ++   ++ pG t+Ld+G+G G  + + ++  +++ +gl l   + k+a++  +++  e + + ++  + +l++      ++d v s   f hv   ++dt f ++k+++ +   ll++     + k   +++   k++ 
  MMETSP0890-20130614|5405_1  75 EKMMALGKVGPGTTVLDLGAGKGRACLEIAQLTNASCFGLDLTPANIKRANEL-KSQYPELSLRFEVGSFTNLPQsvlefaPFDIVFSQVSFCHVH-LQLDTIFTQVKRVMGPTSYLLVNDYLGSEDKYSDDTK---KYVF 210
                 4455555789***********************************99999875.5555578888999999999998998999************95.579***********99999998877766665555322...4444 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.5e-06    0.0024      25     169 ..      79     229 ..      64     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.5e-06
                 HTTTS---.-EEE-------HHHHHHH-.---EEEEES-HHHHHHHHHHHHHT.T-TEEEEE...--GGG----.--BSEEEEES-GGGS-GGG----HHHHHHTB-----EEEEEEB--SSS---------B----HHHHT---EEEEEE- CS
   PF03848.9  25 avkvvkpg.kaldlGcGqGrnslflsll.gydvtavdkneasiailqeiaeke.nldlkaal...ydinaasld.eeydfilstvvlmflqaeripeiianmqektkvGGynlivaamstddvpctvpfsftfkeeelkeyyedwellkyne 169
                 a+  v pg  +ldlG G+Gr +l +++l +     +d   a i+  +e++++  +l+l+ ++    ++ +  l+   +d ++s v +  ++ + + +i +++++   +  y l+   + ++d     +  + f+   ++++y+ ++  k  +
  MMETSP0890-20130614|5405_1  79 ALGKVGPGtTVLDLGAGKGRACLEIAQLtNASCFGLDLTPANIKRANELKSQYpELSLRFEVgsfTNLPQSVLEfAPFDIVFSQVSFCHVHLQ-LDTIFTQVKRVMGPTSYLLVNDYLGSEDKYSDDTKKYVFQRLHFETLYSPSQWRKTAD 229
                 555555652589***********9997615677899********9999998743677665541114666777774579********9988764.7889999999999999*99999999999999999999999999999998887777655 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.021     159     231 ..      83     161 ..      67     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
   PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvake.NaelNkveaklev....allkelpk.ekadviva 231
                 v +g++vlD+G+G G   + +a+L  ++ +++D+ +  +k a+e   ++ +++ ++ev    +l++++++ +++d++++
  MMETSP0890-20130614|5405_1  83 VGPGTTVLDLGAGKGRACLEIAQLTNASCFGLDLTPANIKRANElKSQYPELSLRFEVgsftNLPQSVLEfAPFDIVFS 161
                 56789**********999999*******************998824555677778888444335555555788888876 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.5e-05     0.044      38     151 ..      50     164 ..      46     220 .. 0.80
   2 ?   -2.6   0.0       2.9   2.8e+03      36      51 ..     242     257 ..     225     274 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.5e-05
                 GGGGTTSSS-EE-----EE--HHHHHHHHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--.SEEEE-----...---GGG--BSEEEESSB CS
  PF01135.14  38 fkekaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGr...kGyeekaPYdaihvgaa 151
                 f  +++ d   si  +    a  +  +++ l ++ +g+ vL++G+G G     +a+l ++++   +++ ++  +++a++ lk +  e ++ + vg  +   + + e+aP+d ++  ++
  MMETSP0890-20130614|5405_1  50 FGYFPHLDEKTSIVLDHRQAATALTEKMMALGKVGPGTTVLDLGAGKGRACLEIAQLTNASC--FGLDLTPANIKRANE-LKSQYPElSLRFEVGSFTnlpQSVLEFAPFDIVFSQVS 164
                 5557888899999999999999**************************99988999988888..899988887777754.55444444777777654323367888899998886665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.9
                 GGGGGGTTSSS-EE-- CS
  PF01135.14  36 esfkekaYedaplsig 51 
                 +++ + aY+d++++  
  MMETSP0890-20130614|5405_1 242 DKHLQRAYVDMAQEAR 257
                 4455566666666533 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.5e-05     0.064      13      73 ..      57     138 ..      53     217 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.5e-05
  PF01728.14  13 dekfkll..................kvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttlqgdi......t 73 
                 dek +++                  kvg g+tv+Dlga+ G  +  ++q +  +++ +++Dl p+ ++++++ l+         +
  MMETSP0890-20130614|5405_1  57 DEKTSIVldhrqaataltekmmalgKVGPGTTVLDLGAGKGRACLEIAQLT--NASCFGLDLTPA-NIKRANELKSQYpelslrF 138
                 555554455555555556666666688999**************99*****..9*********99.9999999887764443331 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.17      21      77 ..      81     132 ..      66     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00017
   PF13679.1  21 akeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklg 77 
                  k    +tv+D+GaGkg     +a+       + + +g+d+ ++++++a+el++++ 
  MMETSP0890-20130614|5405_1  81 GKVGPGTTVLDLGAGKGRACLEIAQ-----LTNASCFGLDLTPANIKRANELKSQYP 132
                 56667899*********98888887.....67899****************999876 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.22      21      61 ..      82     126 ..      56     146 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
                 -.....EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHH CS
  PF02390.12  21 k.....lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlk 61 
                 k     +vl++G G+G++ +++A+   + +++G++   + ++++++
  MMETSP0890-20130614|5405_1  82 KvgpgtTVLDLGAGKGRACLEIAQLT-NASCFGLDLTPANIKRANE 126
                 04445589***************986.57899**999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:01.04
# Mc/sec: 677.43
//
Query:       MMETSP0890-20130614|5415_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.94
# Mc/sec: 1177.78
//
Query:       MMETSP0890-20130614|5407_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 682.35
//
Query:       MMETSP0890-20130614|5417_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   13.2  11.6          3    8.1   8.0    2.6  1  PF06005.7 Protein of unknown function (DUF904)
       0.99    9.3   4.4        2.9    7.8   1.6    2.6  2  PF07334.8 Interferon-induced 35 kDa protein (IFP 35) N-terminus
        2.4    7.3   6.0        1.3    8.2   0.1    2.1  2  PF10494.4 Serine-threonine protein kinase 19


Domain annotation for each model (and alignments):
>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.0   0.00065         3      16      58 ..       5      47 ..       2     102 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00065
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
   PF06005.7 16 AvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeereaw 58
                 v++  lLq++i+eL++e++q + e +++  +n+ l+ +++ +
  MMETSP0890-20130614|5417_1  5 CVEENLLLQERIQELEQEKYQDNPESSAIIIKNDSLQMNHQVQ 47
                69999********************************999865 PP

>> PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.6   0.00064       2.9       2      29 ..       2      29 ..       1      39 [. 0.81
   2 ?    0.5   0.0      0.12   5.5e+02      60      73 ..      38      51 ..      26      61 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00064
   PF07334.8  2 iaeiqkenirLkeeiqkLeaELQelkre 29
                +++  +en  L+e+iq Le E  +++ e
  MMETSP0890-20130614|5417_1  2 LHSCVEENLLLQERIQELEQEKYQDNPE 29
                68899***********999997666555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
   PF07334.8 60 kslqvnlkvlyeLq 73
                 slq+n +v   Lq
  MMETSP0890-20130614|5417_1 38 DSLQMNHQVQAALQ 51
                57888888888777 PP

>> PF10494.4  Serine-threonine protein kinase 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   2.1     0.055   2.5e+02      33      82 ..      38      88 ..       8     138 .. 0.58
   2 ?    8.2   0.1   0.00028       1.3       7      61 ..     130     183 ..     124     188 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.055
   PF10494.4 33 pplvlvsqlysllenptkVereieeliregkirklvinnr.k.qlgkvlvlv 82
                 +l + +q+++ l++  +V  e+e+l+r  +   +  ++r + + ++v+  +
  MMETSP0890-20130614|5417_1 38 DSLQMNHQVQAALQAVDTVALELEQLARDRDQT-VNTARReRdEARRVAETA 88
                45888999999999999********99986633.334443322333333333 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00028
   PF10494.4   7 eelpaslsglnstrkaevlklrrsklpplvlvsqlysllenptkVereieelire 61 
                 e l+a   +l+++ +ae    ++s   +++ ++q++ ll ++t+Ve+++++ + +
  MMETSP0890-20130614|5417_1 130 EALTATSVALELKTAAEFQ-AQTSFAARIAFEAQVQDLLLAKTTVEQQLKDALAA 183
                 5555555567777777776.44443555*********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1401  (0.102472); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.51s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 539.18
//
Query:       MMETSP0890-20130614|5413_1  [L=1342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   56.6   0.0    2.3e-15   55.9   0.0    1.4  1  PF01302.20 CAP-Gly domain
    3.7e-15   55.5   0.0    9.7e-15   54.1   0.0    1.6  1  PF02181.18 Formin Homology 2 Domain
    1.8e-09   37.8   0.0    1.8e-09   37.8   0.0    4.7  4  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF01302.20  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   5.1e-19   2.3e-15       2      68 ..     105     177 ..     104     178 .. 0.89

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 5.1e-19
                 ----EE.....SSSS-B----------S.S---..--B----SS--------------S---TT----B-GGGE CS
  PF01302.20   2 gkrvev.....dpekerrGtvryvGpvptfksg..iwvGveldeprGkndGsvdGvrYFeckpkrGvFvkperv 68 
                 g+r+ v     +p +   G + ++Gp++ f++g  +w+G+eld   G +dG+vdGvrYF+  ++rG+Fv++e +
  MMETSP0890-20130614|5413_1 105 GCRIDVldkkgQPRRLDCGKLLFLGPTK-FSTGrqVWCGIELDFDLGAHDGTVDGVRYFTAGKSRGLFVPAELC 177
                 788888888777777788**********.***8556**********************************9976 PP

>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   2.1e-18   9.7e-15      28     167 ..     323     464 ..     288     495 .. 0.77

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 2.1e-18
                 HHHHTTCHHHHCTSHHHHHHHHTBSC--HCCH-----HCCCCTTCCESSS-HHHHHHHHHHCHHH....T.S-HHHHHHHHHTTTT.CCCTHHHHHHHHHHCGGHHHHHHHHTTCCCGTTB-HHHHHHHCCCTCTTHHHHHHHHHH CS
  PF02181.18  28 vWdkleeesfekdldldeleelFsakakkksskkekkkkkkkkkkkikvLdpkrsqnvaIllrkl....k.lpaeeivqailelde.evlslellenLlkmlPtkeeleklkeykgdeskLseaeqFllelvkiprleeRleallf 167
                  W+ + ++   +  ++    e+ s+++ + ++++ +k+ ++++  k  +Ld++r  nvaI+l k+    +  +a+ + +a+le  +   ls+e+le+L+ m+Pt +e  kl + ++++s  s+aeqFl++l+++p+ ++R++a l 
  MMETSP0890-20130614|5413_1 323 EWTMVVAA---FGKKTILQHEIASTQQHQFRNQP-NKTLEQQQLPKPPILDSRRGMNVAIMLAKVcndtHyPDAQAVARALLERPSqHRLSVEQLESLAAMCPTPDECAKLIAVNNSTSLNSQAEQFLWQLARVPHCRQRIDAELC 464
                 55555554...24455555667777877777777.999**************************985442244678999***9988899**********************99****************************99554 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     4e-13   1.8e-09      93     144 ..     211     262 ..     154     265 .. 0.73
   2 ?  -16.3  12.5         3   1.4e+04      65      65 ..     753     753 ..     629     914 .. 0.63
   3 ?   -2.3   0.1      0.95   4.3e+03      77      78 ..    1034    1042 ..     977    1095 .. 0.47
   4 ?   -2.6   0.3       1.2   5.5e+03      64      78 ..    1255    1272 ..    1224    1324 .. 0.55

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 4e-13
   PF10152.4  93 etpaeqe.....pealaegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpe 144
                 +     +     p+  +     +r+ p +akYfkm++lgVp+ av  Km+++G+d++
  MMETSP0890-20130614|5413_1 211 Q-----PivtpqPKIGNDRYEAMRNNPDLAKYFKMVELGVPKSAVACKMISDGIDKN 262
                 2.....1333337777778889*********************************87 PP

  == domain 2    score: -16.3 bits;  conditional E-value: 3
   PF10152.4  65 a 65 
                 +
  MMETSP0890-20130614|5413_1 753 T 753
                 1 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.95
   PF10152.4   77 g.......a 78  
                  +       a
  MMETSP0890-20130614|5413_1 1034 KpaflaaiA 1042
                  122322221 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 1.2
   PF10152.4   64 aaarrsggpppppg...a 78  
                   +++rsg+ ppp +   +
  MMETSP0890-20130614|5413_1 1255 TPKHRSGSAPPPRSpsnS 1272
                  233333333333332330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1211  (0.0885752); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.63u 0.76s 00:00:02.38 Elapsed: 00:00:01.04
# Mc/sec: 3092.22
//
Query:       MMETSP0890-20130614|5408_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-19   68.2   6.0    2.6e-08   33.3   0.0    7.0  7  PF13418.1  Galactose oxidase, central domain
    1.2e-18   66.4   4.1    0.00012   21.8   0.0    6.9  6  PF13854.1  Kelch motif
    6.1e-15   54.5   2.8    2.1e-06   27.5   0.0    6.3  6  PF13964.1  Kelch motif
    7.5e-15   54.5   7.7    0.00055   19.8   0.0    7.0  7  PF13415.1  Galactose oxidase, central domain
    8.4e-09   34.7   0.9    2.6e-06   26.7   0.0    4.4  5  PF01344.20 Kelch motif
    9.7e-08   31.6   3.9     0.0012   18.7   0.0    5.5  6  PF07646.10 Kelch motif
    0.00011   21.0   0.2       0.15   10.6   0.0    2.7  3  PF03089.9  Recombination activating protein 2


Domain annotation for each model (and alignments):
>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.3e-11   2.6e-08       1      42 [.     122     163 ..     122     173 .. 0.90
   2 !    8.2   0.0   0.00096       1.9       1      46 [.     177     229 ..     177     232 .. 0.73
   3 !    6.2   0.0     0.004       7.8       3      39 ..     237     276 ..     236     294 .. 0.77
   4 !    6.2   0.0     0.004       7.8       5      36 ..     297     345 ..     295     345 .. 0.72
   5 !    8.4   0.0   0.00082       1.6       2      20 ..     376     394 ..     376     403 .. 0.92
   6 ?   -2.3   0.0       1.8   3.5e+03      28      37 ..     416     425 ..     414     427 .. 0.88
   7 ?    1.4   0.0      0.13   2.5e+02      14      22 ..     455     463 ..     446     465 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.3e-11
   PF13418.1   1 pRaghsavav.pdgrlylfGGenedggplnDlyvfDlstntWt 42 
                 +R+ hsa+ +  +g++++fGG+ ++   +nD++ fD++t  Wt
  MMETSP0890-20130614|5408_1 122 ARFAHSAIVDaSNGKIVIFGGRHDPY-MFNDTWSFDPKTAIWT 163
                 79*******955589**********5.************9998 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00096
   PF13418.1   1 pRaghsava.v...pdgrlylfGGenedggplnDlyvfDlstntWtrl....ps 46 
                 pR  hsa + +   + + ++++GG n    +++D+++ Dl++++ t++    +s
  MMETSP0890-20130614|5408_1 177 PRRAHSAHYrCrqgRHNEMLIIGGGNAV-ETFGDVWLRDLDNKSTTPWqlvtSS 229
                 6777777775554344788888877775.6*************99888666555 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.004
   PF13418.1   3 aghsavavpdgrlylfGGenedg...gplnDlyvfDlstn 39 
                 +gh++++ + ++l+++GG+  +     +l+D+ +f ++  
  MMETSP0890-20130614|5408_1 237 FGHASSFFAQKYLLVHGGARQSSegfNALDDILLFEFAKD 276
                 79999999999*******9877777899999998877655 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.004
   PF13418.1   5 hsavav....pd.grlylfGGenedg.............gplnDlyvfDl 36 
                 hs++ +    ++  r+++fGG++                 ++nD+yv+Dl
  MMETSP0890-20130614|5408_1 297 HSLTLLdqtnKNtTRFVMFGGYTV-FpvsypafnahecyYCSNDIYVLDL 345
                 6666663322112489******99.8888888888888888888888886 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.00082
   PF13418.1   2 RaghsavavpdgrlylfGG 20 
                 R+gh+av +  +++ +fGG
  MMETSP0890-20130614|5408_1 376 RGGHAAVRLSPDKIMIFGG 394
                 99*******889******8 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 1.8
   PF13418.1  28 lnDlyvfDls 37 
                 l+D++++++s
  MMETSP0890-20130614|5408_1 416 LSDIWLLSIS 425
                 79****9987 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.13
   PF13418.1  14 rlylfGGen 22 
                 ++++fGG++
  MMETSP0890-20130614|5408_1 455 GIFVFGGRD 463
                 79*****97 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.9e-08   0.00012       2      40 ..     120     158 ..     119     160 .. 0.87
   2 !   12.4   0.0   5.2e-05       0.1       2      36 ..     175     212 ..     174     217 .. 0.83
   3 ?    4.9   0.0     0.012        23       7      33 ..     239     267 ..     235     272 .. 0.70
   4 !   11.6   0.4   9.7e-05      0.19       1      39 [.     290     345 ..     290     345 .. 0.70
   5 !    5.7   0.0    0.0067        13       5      25 ..     376     397 ..     374     426 .. 0.64
   6 ?    3.6   0.0     0.031        61      17      28 ..     456     467 ..     443     471 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.9e-08
   PF13854.1   2 PppRarhcavvv..sgniylyGGksgnddsvsddvyvLslp 40 
                 P++R+ h+a+v+  +g+i ++GG+   d+  ++d + ++++
  MMETSP0890-20130614|5408_1 120 PSARFAHSAIVDasNGKIVIFGGRH--DPYMFNDTWSFDPK 158
                 9*********9854589********..9******9977765 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.2e-05
   PF13854.1   2 PppRarhcavv.vs....gniylyGGksgnddsvsddvyv 36 
                 P+pR+ h+a + ++    ++++++GG ++   + + dv+ 
  MMETSP0890-20130614|5408_1 175 PAPRRAHSAHYrCRqgrhNEMLIIGGGNA--VETFGDVWL 212
                 99*******65375446669********5..********5 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.012
   PF13854.1   7 rhcavvvsgniylyGGksg..nddsvsdd 33 
                 ++++  ++ +++++GG  +   + + +dd
  MMETSP0890-20130614|5408_1 239 HASSFFAQKYLLVHGGARQssEGFNALDD 267
                 67778899********9964333333455 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 9.7e-05
   PF13854.1   1 lPppRarhcavvvs......gniylyGGks.......g.nddsv...sddvyvLsl 39 
                 +P+p +rh+   ++      + + ++GG++       + n  +    s+d+yvL+l
  MMETSP0890-20130614|5408_1 290 PPSPCYRHSLTLLDqtnkntTRFVMFGGYTvfpvsypAfNAHECyycSNDIYVLDL 345
                 59*********99744333337********88776442433333335599999997 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.0067
   PF13854.1   5 Rarhcavvvs.gniylyGGksg 25 
                 R +h+av +s ++i ++GG ++
  MMETSP0890-20130614|5408_1 376 RGGHAAVRLSpDKIMIFGGGIQ 397
                 7899***98769*******994 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.031
   PF13854.1  17 iylyGGksgndd 28 
                 i+++GG++++d+
  MMETSP0890-20130614|5408_1 456 IFVFGGRDYRDE 467
                 9*******8443 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.1e-09   2.1e-06       4      43 ..     125     165 ..     122     172 .. 0.85
   2 ?    3.4   0.0     0.044        87      15      43 ..     196     226 ..     177     233 .. 0.79
   3 !    7.1   0.0    0.0031         6       4      47 ..     239     291 ..     236     296 .. 0.78
   4 ?    3.1   0.2     0.053     1e+02      13      35 ..     311     345 ..     295     346 .. 0.80
   5 !    5.5   0.0    0.0093        18      11      35 ..     386     424 ..     376     428 .. 0.79
   6 ?    0.8   0.0      0.29   5.6e+02      13      22 ..     455     464 ..     446     470 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.1e-09
   PF13964.1   4 ghsavs..vggkiyifGGytnsgkylndvlvydpetksWeql 43 
                 +hsa++   +gki+ifGG+ +  + +nd + +dp+t  W+ l
  MMETSP0890-20130614|5408_1 125 AHSAIVdaSNGKIVIFGGRHD-PYMFNDTWSFDPKTAIWTNL 165
                 56665543779**********.699**************965 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.044
   PF13964.1  15 yifGGytnsgkylndvlvydpetks...Weql 43 
                  i+GG ++  +++ dv++ d+++ks   W+ +
  MMETSP0890-20130614|5408_1 196 LIIGGGNA-VETFGDVWLRDLDNKSttpWQLV 226
                 68888888.7********99999985666665 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0031
   PF13964.1   4 ghsavsvggkiyifGGytns...gkylndvlvyd......petksWeqlpplp 47 
                 + s+  +++++ ++GG+ +s   +++l+d+l++       pe ++++q++ +p
  MMETSP0890-20130614|5408_1 239 HASSFFAQKYLLVHGGARQSsegFNALDDILLFEfakdtaPELMRIDQCGEPP 291
                 46788899**********999************96666666666677775555 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.053
   PF13964.1  13 kiyifGGytns............gkylndvlvydp 35 
                 ++++fGGyt              ++ +nd++v+d+
  MMETSP0890-20130614|5408_1 311 RFVMFGGYTVFpvsypafnahecYYCSNDIYVLDL 345
                 6899****998899888888888888888888775 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0093
   PF13964.1  11 ggkiyifGGytns..............gkylndvlvydp 35 
                  +ki+ifGG ++               + +l+d++++++
  MMETSP0890-20130614|5408_1 386 PDKIMIFGGGIQVedhppppinevdpfEIDLSDIWLLSI 424
                 479********9999888888888888888888887776 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.29
   PF13964.1  13 kiyifGGytn 22 
                 +i++fGG++ 
  MMETSP0890-20130614|5408_1 455 GIFVFGGRDY 464
                 69*****975 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.19   3.8e+02      35      48 ..     117     130 ..     107     131 .. 0.82
   2 !   19.8   0.0   2.8e-07   0.00055       1      46 [.     134     183 ..     134     185 .. 0.83
   3 !    8.4   0.1    0.0011       2.2       2      39 ..     193     232 ..     192     244 .. 0.74
   4 !   11.5   0.0   0.00012      0.23       3      47 ..     248     300 ..     246     302 .. 0.86
   5 !    8.9   0.0   0.00075       1.5       3      47 ..     311     382 ..     309     384 .. 0.78
   6 ?   -1.9   0.0       1.9   3.7e+03      18      28 ..     416     426 ..     413     432 .. 0.86
   7 ?    1.4   0.2      0.18   3.4e+02       4      12 ..     456     464 ..     455     481 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.19
   PF13415.1  35 gslPppRaghtata 48 
                  s P++R  h+a +
  MMETSP0890-20130614|5408_1 117 NSSPSARFAHSAIV 130
                 578********976 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2.8e-07
   PF13415.1   1 gdelyvfGGlgddgqtrl..ndvyvldldtntweei......gslPppRaghta 46 
                 ++++++fGG+     +++  nd++ +d++t  w+ +       + P pR+ h+a
  MMETSP0890-20130614|5408_1 134 NGKIVIFGGRH----DPYmfNDTWSFDPKTAIWTNLdhqaiqEERPAPRRAHSA 183
                 578********....56778**************9966555444599*****97 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0011
   PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtn...tweei.gslPp 39 
                 +e++++GG +    +  +dv+  dld+     w+ + +sl p
  MMETSP0890-20130614|5408_1 193 NEMLIIGGGN--AVETFGDVWLRDLDNKsttPWQLVtSSLTP 232
                 79********..89999********76633366644555554 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00012
   PF13415.1   3 elyvfGGlgd..dgqtrlndvyvldldtn......tweeigslPppRaghtat 47 
                 +l+v+GG +   +g ++l d + +  +++       ++++g++P+p + h++t
  MMETSP0890-20130614|5408_1 248 YLLVHGGARQssEGFNALDDILLFEFAKDtapelmRIDQCGEPPSPCYRHSLT 300
                 79*******988889999********888788777888889999999999987 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.00075
   PF13415.1   3 elyvfGGlgd........dgqtrl...ndvyvldl.......dtn....tweei......gslPppRaghtat 47 
                 ++++fGG++         +  +++   nd yvldl       d++     w+ i      +++ p R gh+a+
  MMETSP0890-20130614|5408_1 311 RFVMFGGYTVfpvsypafNAHECYycsNDIYVLDLlfphiphDDDrpylVWTSIetpldmPDI-PVRGGHAAV 382
                 689999999999999888777777999********9999998444689999988666664444.577777775 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 1.9
   PF13415.1  18 lndvyvldldt 28 
                 l+d + l++++
  MMETSP0890-20130614|5408_1 416 LSDIWLLSISK 426
                 79******987 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.18
   PF13415.1   4 lyvfGGlgd 12 
                 ++vfGG++ 
  MMETSP0890-20130614|5408_1 456 IFVFGGRDY 464
                 89****995 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.3e-09   2.6e-06       3      43 ..     126     165 ..     125     166 .. 0.92
   2 ?    0.4   0.0      0.22   4.4e+02      12      22 ..     193     203 ..     192     220 .. 0.79
   3 ?   -1.5   0.0      0.84   1.6e+03      25      35 ..     335     345 ..     315     347 .. 0.71
   4 ?   -0.3   0.0      0.37   7.3e+02      12      22 ..     387     397 ..     379     413 .. 0.80
   5 ?    0.5   0.0       0.2     4e+02      14      22 ..     456     464 ..     456     479 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.3e-09
                 SCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEEEE CS
  PF01344.20   3 ssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWekl 43 
                 +sa v + +gki ++GGr +     n+++ +Dp+t +W+ l
  MMETSP0890-20130614|5408_1 126 HSAIVDASNGKIVIFGGRHD-PYMFNDTWSFDPKTAIWTNL 165
                 56778999************.*****************976 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.22
                 TEEEEE---BS CS
  PF01344.20  12 gkiYviGGrdg 22 
                 +++ +iGG + 
  MMETSP0890-20130614|5408_1 193 NEMLIIGGGNA 203
                 7899****997 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.84
                 S-TTEEEEEET CS
  PF01344.20  25 nalnsVerYDp 35 
                  ++n+++++D+
  MMETSP0890-20130614|5408_1 335 YCSNDIYVLDL 345
                 45777777775 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.37
                 TEEEEE---BS CS
  PF01344.20  12 gkiYviGGrdg 22 
                 +ki ++GG  +
  MMETSP0890-20130614|5408_1 387 DKIMIFGGGIQ 397
                 79******877 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.2
                 EEEE---BS CS
  PF01344.20  14 iYviGGrdg 22 
                 i+v+GGrd 
  MMETSP0890-20130614|5408_1 456 IFVFGGRDY 464
                 89*****95 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     6e-07    0.0012       6      45 ..     129     165 ..     122     166 .. 0.86
   2 ?   -0.9   0.0      0.92   1.8e+03      14      38 ..     195     216 ..     193     219 .. 0.80
   3 ?   -2.1   0.0       2.2   4.3e+03       4      20 ..     238     255 ..     237     272 .. 0.68
   4 ?    1.3   0.0      0.19   3.7e+02      12      21 ..     310     331 ..     293     362 .. 0.63
   5 ?    5.0   0.0     0.012        24       2      40 ..     376     427 ..     375     428 .. 0.84
   6 ?    2.2   0.0     0.099   1.9e+02      14      25 ..     456     468 ..     454     496 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6e-07
  PF07646.10   6 savvpggkiyvvGGahtdngllsssdlnvldpeknvWeel 45 
                 ++  ++gki+++GG+   +++  ++d + +dp++  W++l
  MMETSP0890-20130614|5408_1 129 IVDASNGKIVIFGGR---HDPYMFNDTWSFDPKTAIWTNL 165
                 34478**********...*******************986 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.92
  PF07646.10  14 iyvvGGahtdngllsssdlnvldpe 38 
                 ++++GG    n ++ ++d+++ d++
  MMETSP0890-20130614|5408_1 195 MLIIGGG---NAVETFGDVWLRDLD 216
                 7899998...999999999987766 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.2
  PF07646.10   4 ghsavvp.ggkiyvvGGa 20 
                 gh+++   +  ++v GGa
  MMETSP0890-20130614|5408_1 238 GHASSFFaQKYLLVHGGA 255
                 677775547788999999 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.19
  PF07646.10  12 gkiyvvGGa............h 21 
                  + +++GG+            h
  MMETSP0890-20130614|5408_1 310 TRFVMFGGYtvfpvsypafnaH 331
                 5779999996666655555550 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.012
  PF07646.10   2 ryghsav.vpggkiyvvGGa............htdngllsssdlnvldpekn 40 
                 r+gh+av  + +ki ++GG             + d +  ++sd+++l  +k 
  MMETSP0890-20130614|5408_1 376 RGGHAAVrLSPDKIMIFGGGiqvedhppppinEVDPFEIDLSDIWLLSISKS 427
                 8999999555788888888779999999999999999999999999988875 PP

  == domain 6    score: 2.2 bits;  conditional E-value: 0.099
  PF07646.10  14 iyvvGGa.htdng 25 
                 i+v+GG+ + d+g
  MMETSP0890-20130614|5408_1 456 IFVFGGRdYRDEG 468
                 9******755554 PP

>> PF03089.9  Recombination activating protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00076       1.5      84     111 ..     119     144 ..     114     154 .. 0.87
   2 !   10.6   0.0   7.9e-05      0.15      42     140 ..     250     347 ..     236     351 .. 0.72
   3 ?   -4.2   0.1       2.4   4.7e+03     105     115 ..     457     467 ..     455     469 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00076
   PF03089.9  84 vPearyGhtinvvysrGktacvlfGGrs 111
                  P+ar+ h+  v  s+Gk  +v+fGGr+
  MMETSP0890-20130614|5408_1 119 SPSARFAHSAIVDASNGK--IVIFGGRH 144
                 69***************9..59*****7 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 7.9e-05
   PF03089.9  42 lihGGktPnnelsdklyllsleskgankkvtlsctekelvGdvPearyGhtinvvysrGk..tacvlfGGrsylpsgqrttenWnsvvdclPevflidlef 140
                 l+hGG    +e  + l  + l   +  k +    +  +  G+ P++ y h++ ++ +  k  t  v+fGG +  p +  + +  +    c  +++++dl f
  MMETSP0890-20130614|5408_1 250 LVHGGARQSSEGFNALDDILLFEFA--KDTAPELMRIDQCGEPPSPCYRHSLTLLDQTNKntTRFVMFGGYTVFPVSYPAFNAHE-CYYCSNDIYVLDLLF 347
                 5677777666666666655555444..4444444556779**************98766521668********999887766655.467999999999977 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 2.4
   PF03089.9 105 vlfGGrsylps 115
                  +fGGr y+ +
  MMETSP0890-20130614|5408_1 457 FVFGGRDYRDE 467
                 58******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1647.91
//
Query:       MMETSP0890-20130614|5426_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-16   58.1   0.0    6.9e-16   58.0   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    5.2e-07   29.1   0.0    6.4e-07   28.9   0.0    1.2  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     1e-19   6.9e-16      14      66 ..       1      53 []       1      53 [] 0.81

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 1e-19
   PF13306.1 14 ltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
                lt++t+p  +t+Ig+yaFs+c+sl++++lp  +t ig+ aF++c+slt+it+p
  MMETSP0890-20130614|5426_1  1 LTQLTLPVGLTTIGDYAFSGCTSLTQLSLPAGITMIGDDAFEDCTSLTQITLP 53
                67888888888888888888888888888888888888888888888888876 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   9.4e-11   6.4e-07       8      56 ..       6      52 ..       1      53 [] 0.90

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 9.4e-11
   PF13855.1  8 LsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                L    l++i+d aF+g+++L+ L+L    ++ i ++af++++sL+++ L
  MMETSP0890-20130614|5426_1  6 LPVG-LTTIGDYAFSGCTSLTQLSLP-AGITMIGDDAFEDCTSLTQITL 52
                5555.9********************.*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       107  (0.00782621); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.38s 00:00:00.66 Elapsed: 00:00:00.62
# Mc/sec: 204.85
//
Query:       MMETSP0890-20130614|5434_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0009   18.9   0.5     0.0024   17.6   0.1    1.8  2  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.7e-07    0.0024     134     164 .]      34      68 ..       4      68 .. 0.74
   2 ?   -0.7   0.0     0.073     1e+03     114     133 ..     114     133 ..      95     150 .. 0.49

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.7e-07
  PF00849.17 134 t....pksgksakvtlveleletGrkhQiRahlaa 164
                 t    +k  ++++ +  ++++ +Gr++QiR++++a
  MMETSP0890-20130614|5434_1  34 TktkpCKIIQGENRYSFQITITEGRNRQIRRMCQA 68 
                 0334467778999999*****************96 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.073
  PF00849.17 114 eeldgkkavtylrvlksgsk 133
                  ++d  k+ t +++ +s s 
  MMETSP0890-20130614|5434_1 114 SDDDSGKKTTFHKMTQSPSS 133
                 23333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.44s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 444.20
//
Query:       MMETSP0890-20130614|5438_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-10   39.2  39.4         18    4.6  27.3    3.5  1  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6  27.3    0.0013        18       2      27 ..      17      41 ..       1      57 [] 0.52

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0013
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPt 27
                pT+qPt++PTv PT +Pt +PT +Pt
  MMETSP0890-20130614|5438_1 17 PTVQPTAKPTVSPTVAPT-EPTVAPT 41
                455555555555554433.2333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                       88  (0.00643651); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 195.13
//
Query:       MMETSP0890-20130614|5429_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-50  171.6   0.1      2e-50  171.5   0.1    1.0  1  PF00503.15 G-protein alpha subunit
    3.4e-06   26.2   0.4      0.011   14.8   0.0    2.5  3  PF00025.16 ADP-ribosylation factor family
     0.0005   19.1   0.5       0.56    9.2   0.3    3.0  3  PF04670.7  Gtr1/RagA G protein conserved region
     0.0049   16.2   0.1      0.013   14.8   0.0    1.7  2  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.067   12.2   0.0       0.72    8.8   0.0    2.0  2  PF08433.5  Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   0.1   7.2e-54     2e-50      45     242 ..       4     191 .]       1     191 [] 0.91

  Alignments for each domain:
  == domain 1    score: 171.5 bits;  conditional E-value: 7.2e-54
                 XXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXXXXXHHHHHHHHHHHHHHHHHHHHXXXHHHHHHXSS..XHHHHHXXXHHHHXXXXXSSXX..XXHHHHXXXCTCHHXHHHHHHHTXXXXSXXXTTHHHHHTTHHHHHSTTXXXXHHHHHHXXXXXXXXEEEEEXX.XXXEEEEEEXXXXGGGGGGT CS
  PF00503.15  45 skkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpgfsreeraswraviylnivrsiktilealekleielslskseeneeqleklksrldpldeiealvleelaedikelwndpgvqevlerrrkikledsaeyFldnleriaspdYvPtddDilrarlkttGiseikfevesktefrlvDvGGqrserkkW 242
                 ++++ +++ k++  +klLlLG geSGKsT +kq+klly++g+s++er+ w + i+   + ++k+++ a  +l+ +++       ++++  ++s+ ++ +     ++ e+a+ i +lw+dpg++e+ +rr+++++ +s e +++++ +i++  Y P+ddDil +r++t+Gi e ++ + +++ef ++DvGGqr+erkkW
  MMETSP0890-20130614|5429_1   4 EENNLKDHAKNEMSIKLLLLGPGESGKSTMFKQMKLLYGKGYSDDERRDWLPKIQMGAIGAMKSVCVAAARLGLDEK-----VINKEALSVMSKVNEREA----LTVEIANMIMQLWEDPGIKETWDRRSEFQVIESNELYFEKILQISRAGYLPSDDDILASRVRTCGIVEESYII-ENVEFVIIDVGGQRNERKKW 191
                 455556777788899**********************************************************9985.....334444455555544444....899**********************************************************************.9******************* PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00022      0.59       7      35 ..      10      38 ..       5      42 .. 0.85
   2 ?   -3.1   0.0       1.2   3.4e+03      52      63 ..     100     111 ..      81     119 .. 0.66
   3 !   14.8   0.0   4.2e-06     0.011      42      75 ..     158     191 .]     150     191 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00022
                CC--.TSEEEEEEE--TT---HHHHHHHH CS
  PF00025.16  7 klklkkkelrilllGLDnaGKtTilkklk 35
                   ++++++++lllG  ++GK+T+ k++k
  MMETSP0890-20130614|5429_1 10 DHAKNEMSIKLLLLGPGESGKSTMFKQMK 38
                45566899*****************9987 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.2
                 EEEETTEEEEEE CS
  PF00025.16  52 eleiknlkftvw 63 
                 ++ei n+ +++w
  MMETSP0890-20130614|5429_1 100 TVEIANMIMQLW 111
                 566666666666 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 4.2e-06
                 E-S--S-EEEEEEETTEEEEEEE----GGGGGCG CS
  PF00025.16  42 tvPTigfnveeleiknlkftvwDvGGqeklRplW 75 
                  v T+g   e+  i+n++f + DvGGq++ R+ W
  MMETSP0890-20130614|5429_1 158 RVRTCGIVEESYIIENVEFVIIDVGGQRNERKKW 191
                 5678999999999*******************99 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.3    0.0002      0.56       1      17 [.      19      35 ..      19      42 .. 0.91
   2 ?    3.2   0.0     0.014        38      29      68 ..      87     126 ..      59     139 .. 0.75
   3 ?    3.4   0.0     0.011        31      39      61 ..     166     187 ..     146     190 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0002
   PF04670.7  1 klLLmGksgsGKtSmrs 17
                klLL+G+++sGK++m +
  MMETSP0890-20130614|5429_1 19 KLLLLGPGESGKSTMFK 35
                89************965 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.014
   PF04670.7  29 lrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsr 68 
                 l++ + ++ ++      +n+ ++lw+ +G +e  +   + 
  MMETSP0890-20130614|5429_1  87 LSVMSKVNEREALTVEIANMIMQLWEDPGIKETWDRRSEF 126
                 4544444444444455789**********99998876544 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.011
   PF04670.7  39 qshvrflgnlklnlwDcgGqeef 61 
                 ++++ + +n+++ ++D+gGq + 
  MMETSP0890-20130614|5429_1 166 EESY-IIENVEFVIIDVGGQRNE 187
                 3333.4899***********875 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.8e-06     0.013      25      49 ..      19      42 ..       5      47 .. 0.76
   2 ?   -2.8   0.0       1.5   4.1e+03      30      42 ..      60      72 ..      59      74 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.8e-06
   PF13555.1 25 ntlltGasGsGKSTllDAiqtlLvp 49
                + ll G+ +sGKST++  ++ lL++
  MMETSP0890-20130614|5429_1 19 KLLLLGPGESGKSTMF-KQMKLLYG 42
                489************9.45566665 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.5
   PF13555.1 30 GasGsGKSTllDA 42
                Ga G+ KS  + A
  MMETSP0890-20130614|5429_1 60 GAIGAMKSVCVAA 72
                8889989988876 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.049   1.3e+02       5      22 ..      21      38 ..      19      52 .. 0.85
   2 ?    8.8   0.0   0.00026      0.72     114     167 ..      88     141 ..      58     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.049
   PF08433.5  5 vltGlPssGKstvakeLa 22
                +l G   sGKst+ k+++
  MMETSP0890-20130614|5429_1 21 LLLGPGESGKSTMFKQMK 38
                6889999******99986 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00026
   PF08433.5 114 kwneereekekyekelleaLiqRfEePdsknrWDs.Plftvlsaeeklpldeilk 167
                 ++ ++ +e+e  + e+ + ++q +E P  k  WD+   f+v   +++l +++il+
  MMETSP0890-20130614|5429_1  88 SVMSKVNEREALTVEIANMIMQLWEDPGIKETWDRrSEFQVI-ESNELYFEKILQ 141
                 33355556666999********************73679997.999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 663.34
//
Query:       MMETSP0890-20130614|5436_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       962  (0.0703628); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.43s 00:00:01.31 Elapsed: 00:00:01.10
# Mc/sec: 1139.36
//
Query:       MMETSP0890-20130614|5445_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-23   80.7   0.0    1.2e-22   79.9   0.0    1.3  1  PF11815.3  Domain of unknown function (DUF3336)
    2.5e-19   69.8   0.0      1e-18   67.8   0.0    2.0  1  PF01734.17 Patatin-like phospholipase
  ------ inclusion threshold ------
       0.13   12.0   0.0        0.5   10.2   0.0    1.8  2  PF04970.8  Lecithin retinol acyltransferase


Domain annotation for each model (and alignments):
>> PF11815.3  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   2.5e-26   1.2e-22      13     128 ..      10     129 ..       2     146 .. 0.90

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 2.5e-26
   PF11815.3  13 reklrkelraaesyeeWkaaAkelDelegndaWkeedesayYDyklvkerlkqlrearekkdieellallrtclkrnlggienprlYsksyvG.TKklveeYideveasleflaes...k 128
                  ++lr++l +aesy +W + A++lD+  g   W ++  s +Y+++ vke++++lr    ++d+++++  lr c+  n+gg+  ++l+s +++G  K +v++++dev +sle la+    +
  MMETSP0890-20130614|5445_1  10 HRELRRKLGRAESYSQWLKSARRLDASKGAALWLSDLRSTRYNWRFVKETIRRLRLGVGEDDWRAVVGALRLCTRPNVGGVMTQQLFSATHTGdPKTIVTDFVDEVAHSLEWLANRavkQ 129
                 469*****************************************************************************************86899*****************986642 PP

>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.3e-22     1e-18       1     201 [.     159     356 ..     159     359 .. 0.84

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.3e-22
  PF01734.17   1 LvlsGGGtrGafslgalkaLkkelgdrfdiisGtSaGaiiaallalgrdpaalvedlrelllnkffdrdllirelaanlaarlsgllgpgglfdaealrellr.......kvlgdltlkrlsarlgklpllkslataaqavpaittataasastantanslyteddeddvpladavraSsafPglf..............ppvsldgelyvDGGildNnPil 201
                 L+lsGGG++G +++g+ +a+ + +g  + ++sGtSaGai+aa++++ + ++ +++ +++  l      +       +  ++ l ++l  g  +d++++ +l r         + ++t+ ++  r g+                  +a ++ a+    +  l+t+ + + v +a+a+ a++ +Pgl+               +++++ge y+DG+i+  +P+l
  MMETSP0890-20130614|5445_1 159 LSLSGGGALGTYHFGVCRAI-YSEGLLPHVVSGTSAGAIVAAFICSRTKAELDRDLYDDHALQSHLVCF------DQTPWQCLCHFLKHGVAYDGDHWMQLCRwfandqpDGVPNMTFLEAYQRSGRS-----------------LAITVCAKGKRAPPVLLTHHTSPHVLVASAIVATAGVPGLIkptillekdpetgkVARQVGGEAYMDGSIVHDIPTL 356
                 89******************.********************9988888888888888887777777766......456666666777777889**********7777666667777777777777777.................7888999999999999*************************6666666666666666666999************97 PP

>> PF04970.8  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011       0.5      49     106 ..      96     154 ..      82     156 .. 0.86
   2 ?   -1.7   0.0      0.51   2.3e+03      64     102 ..     470     508 ..     468     513 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00011
                 GGGGT--S-EEEEEE-HHHH----EEEE--TTTTT---S-HHHHHHHHHHH---EE.SS CS
   PF04970.8  49 svlgvlskkasVkkssleefaaggklrvnekldtkaeslpneeviqrAeellgqev.eY 106
                  ++ ++ + +++  + ++e+a++ ++  n+  +++ +s +ne+ i+ A+el+ ++  +Y
  MMETSP0890-20130614|5445_1  96 FSATHTGDPKTIVTDFVDEVAHSLEWLANRAVKQNGSSTENEKCIRAARELVTNGAaSY 154
                 556667778899999*************************************9976566 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.51
                 -HHHH----EEEE--TTTTT---S-HHHHHHHHHHH--- CS
   PF04970.8  64 sleefaaggklrvnekldtkaeslpneeviqrAeellgq 102
                 s++ f++gg++   +k++++++++++e+  ++A++ l++
  MMETSP0890-20130614|5445_1 470 SMQRFIRGGRVAAYQKIAMIRTRYTVEHAFSTARKALER 508
                 578899999999999999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.44s 00:00:01.33 Elapsed: 00:00:01.08
# Mc/sec: 1227.02
//
Query:       MMETSP0890-20130614|5442_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-14   51.9   0.1    2.1e-13   50.1   0.0    2.0  2  PF01926.18 50S ribosome-binding GTPase
    2.6e-13   49.4   0.0    5.9e-13   48.3   0.0    1.6  1  PF06858.9  Nucleolar GTP-binding protein 1 (NOG1)
    3.6e-06   26.2   0.3      1e-05   24.7   0.1    2.0  2  PF02421.13 Ferrous iron transport protein B
    0.00011   21.3   0.0    0.00026   20.0   0.0    1.6  1  PF03193.11 Protein of unknown function, DUF258
     0.0013   18.9   0.0     0.0046   17.1   0.0    2.0  1  PF13238.1  AAA domain
     0.0024   18.1   0.2     0.0024   18.1   0.1    2.8  3  PF13191.1  AAA ATPase domain
     0.0032   18.1   0.0      0.013   16.1   0.0    2.1  2  PF13207.1  AAA domain
     0.0075   16.6   0.1      0.055   13.8   0.0    2.4  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.018   14.7   0.8       0.52    9.9   0.1    2.8  2  PF00350.18 Dynamin family
      0.019   14.8   0.1       0.07   12.9   0.1    2.2  1  PF13521.1  AAA domain
      0.029   13.3   1.5       0.25   10.3   0.1    2.6  2  PF04548.11 AIG1 family
      0.063   13.0   1.5          2    8.1   0.0    3.0  2  PF13671.1  AAA domain
       0.23   11.4   1.9        2.2    8.2   0.0    2.7  3  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8     4e+03      78      86 ..     176     184 ..     152     212 .. 0.48
   2 !   50.1   0.0     2e-16   2.1e-13       2      90 ..     224     352 ..     223     381 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.8
                 SSEEEEEEE CS
  PF01926.18  78 advlllvvd 86 
                 ++ ++lv++
  MMETSP0890-20130614|5442_1 176 TEEVILVIE 184
                 222333333 PP

  == domain 2    score: 50.1 bits;  conditional E-value: 2e-16
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE..........................ETTE...........E.EEEE---SSSHHHHHHHHHHHHHHHHHHCTS.SEEEEEEETTS....H CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev..........................kkek...........i.ilvDtPGiiegasedkeiegikkylekvera.dvlllvvdasa....v 90 
                 v++vG pNvGKStL++ L+  +   +++yp+tTr +  ++v                             +           i ++vDtPG++ +++++ + ++ + +l+ ++ +  ++++v+d+s      
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTGEP-TIGNYPFTTRGVSMGHVlretdakisqfqekekyddntqsladM--NgrhvrrrrmdiIgQVVDTPGLLARSDDETRNDMEELTLATMRFLpSAVVFVLDLSGaagdD 352
                 89*****************8766.9***********66665566677777777777666555555551..034455556674357*******9877776666677777888766646799999966534431 PP

>> PF06858.9  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   5.6e-16   5.9e-13       2      58 .]     324     383 ..     323     383 .. 0.96

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 5.6e-16
   PF06858.9   2 iEkqaitALahlraavlflfDlseqcgy...sleeQlkLfkeikelFknkpvivVlnKiD 58 
                 +E ++++ +++l++av+f++Dls+  g    s+++Q+k +++++ lF+++p+i+V++K+D
  MMETSP0890-20130614|5442_1 324 MEELTLATMRFLPSAVVFVLDLSGAAGDdksSPQDQIKVRDSLRALFPKRPWIDVVSKAD 383
                 9***********************9998888***************************99 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   9.7e-09     1e-05       2      43 ..     223     264 ..     222     315 .. 0.86
   2 ?   -4.0   0.0       6.1   6.5e+03     141     163 ..     432     454 ..     429     464 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 9.7e-09
                 EEEEE--TT---HHHHHHH----TB--------S--BB--EE CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklk 43 
                 tv+lvG pnvGK+tl+  l+  + ++gN+p +T   + g++ 
  MMETSP0890-20130614|5442_1 223 TVVLVGAPNVGKSTLVRLLSTGEPTIGNYPFTTRGVSMGHVL 264
                 699***************************999777777665 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 6.1
                 EBCCGTB--HHHHHHHHHHCTCG CS
  PF02421.13 141 tvarkkkgieelleaiievaeke 163
                 ++ ++ +g+++l++a+++++++ 
  MMETSP0890-20130614|5442_1 432 VSVKHDRGTDDLKAAVAHLHSQV 454
                 56677888999999888776654 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.5e-07   0.00026      33      99 ..     219     314 ..     198     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.5e-07
                 CTTSBEEEE-------HHHHHHH----...................................----S--------------S-BEEE-.---EEES----TS CS
  PF03193.11  33 lkdktsvlvGqSGvGKSsLinallpel...................................dlkvgevseklgrGkhTTtavellklsegglliDtPGfre 99 
                 l+  t+vlvG   vGKS+L+  l+  +                                   d +++  s ++ +G+h  ++ ++  +   g ++DtPG+  
  MMETSP0890-20130614|5442_1 219 LSTPTVVLVGAPNVGKSTLVRLLSTGEptignypfttrgvsmghvlretdakisqfqekekyDDNTQ--SLADMNGRHVRRR-RMDII---GQVVDTPGLLA 314
                 67789*******************9999*********************999999999884444444..5556689997554.44444...9*******854 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.3e-06    0.0046       1      51 [.     224     282 ..     224     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.3e-06
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl...........gdvlrdlakengleeevddkidtkeskel 51 
                 ++++G+p vGK+Tl ++L+  +           g+++ +++ e +   +++++   ke+ + 
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTGEptignypfttrGVSMGHVLRETDAKISQFQE---KEKYDD 282
                 789***************98878899999999999999999999999999999...333322 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.51   5.3e+02      48     140 ..      87     186 ..      63     201 .. 0.51
   2 !   18.1   0.1   2.3e-06    0.0024       8     138 ..     203     344 ..     189     371 .. 0.67
   3 ?   -3.1   0.0       7.4   7.8e+03      77      92 ..     445     460 ..     421     478 .. 0.53

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.51
   PF13191.1  48 llerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga.................lipelegiiglqalvalldaalartrrpklvlvlDDl 140
                 +++r r++a  + q+   +        +rel+++   +  ++   + e++ a l+a                 l+   +g+ +++ ++ + ++ +++t+   ++lv+++l
  MMETSP0890-20130614|5442_1  87 VRKRSREQANAIGQAVSIP--------VRELIQAYDLKNLEQRLHPFEFATARLTArhrtregymsmedilveLKNLRNGVLETSKATIQQSKNATNTE--EVILVIENL 186
                 4444444444444444432........555555555555555555555555555554555445555555544422222222222222222222222222..177777764 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.3e-06
   PF13191.1   8 eleaLlaalrrvse..gsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn......lpysaiiqalrellrqlltelaaelggwreallaalga...lipelegiiglqalvalldaalartr...............rpklvlvlD 138
                 el+ L +a+rr      s+  ++++G++ +GKS+L+r      l   + + + + + ++++      +        lre  +++++ +++e  +++++ la+ +    +  ++++i    +++ ll +  ++tr               ++ +v+vlD
  MMETSP0890-20130614|5442_1 203 ELKLLGRAFRRLPTvdLSTpTVVLVGAPNVGKSTLVRL-----LS-TG-EPTIGNYPFTTRgvsmghV--------LRETDAKISQFQEKEKYDDNTQSLADMNGrhvRRRRMDIIGQVVDTPGLLARSDDETRndmeeltlatmrflpSA-VVFVLD 344
                 677777888874332333369***************87.....43.34.4444444454442322222........555555555555555555555555544448977777777777778888888888888888888888888776443.999999 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 7.4
   PF13191.1  77 ellrqlltelaaelgg 92 
                 +++++l +++aa +++
  MMETSP0890-20130614|5442_1 445 AAVAHLHSQVAAVARA 460
                 3333333333333322 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.8   5.1e+03      28      76 ..     143     184 ..     110     213 .. 0.56
   2 !   16.1   0.0   1.3e-05     0.013       2      60 ..     224     290 ..     223     348 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 4.8
                 EEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH....H..HHHHH CS
   PF13207.1  28 lslddllreeglkelddgereskdadadllaaildglaakkdtlswvid 76 
                  s++d  +   lk l++g++e+  a ++  ++  + +     + ++vi+
  MMETSP0890-20130614|5442_1 143 MSMED--ILVELKNLRNGVLETSKATIQQSKNATNTE-----EVILVIE 184
                 45555..444444444455444333333333332222.....2233333 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.3e-05
                 E--B--TT---HHHHHHHHHHS....TEEE....EEGGG.B--GGGS-B-----B--SSGGGB-HHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl....glpv....lsldd.llreeglkelddgereskdadadllaai 60 
                 ++++G+p +GKsTl ++L+       ++p     +s++  l re + k+ + +e e +d + + la+ 
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTGEptigNYPFttrgVSMGHvL-RETDAKISQFQEKEKYDDNTQSLADM 290
                 7899**************98433555677777889999944.77777777755545555555444444 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.4   1.5e+03      30      65 ..     164     198 ..     148     206 .. 0.71
   2 !   13.8   0.0   5.3e-05     0.055       2      62 ..     224     279 ..     223     346 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.4
   PF08477.8  30 peeikgdtlavktlevdvdtellelwdlggreelkk 65 
                 +  i++++ a +t+ev+   e   l d++gr+++k+
  MMETSP0890-20130614|5442_1 164 KATIQQSKNATNTEEVILVIEN-LLKDVEGRIKAKA 198
                 4556666666666666666666.3899999999887 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5.3e-05
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp.........kkklpeeikgdtlavktlevdvdtellelwdlggree 62 
                 vv+vG ++vGKs+l++ l ++e                       ++     v  +t+  ++ +++++e+
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTGEPTignypfttrG-----------VS--MGHVLRETDA-KISQFQEKEK 279
                 89*******************9993333333221...........22..2222222222.2233333333 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7     5e+03     125     165 ..     142     183 ..     133     188 .. 0.57
   2 ?    9.9   0.1   0.00049      0.52       1      71 [.     224     290 ..     224     365 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.7
                 HHSTTEEEEEEEETTS-STT-SHHHHHHHH------.EE-EE CS
  PF00350.18 125 yikkadiilavtdanhdlstsealflarevdpkgkr.tivVl 165
                 y+  +di++ + +  + + ++ +  ++++    ++  +i+V+
  MMETSP0890-20130614|5442_1 142 YMSMEDILVELKNLRNGVLETSKATIQQSKNATNTEeVILVI 183
                 566666666666666655555555555555544444345544 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00049
                 EEEE--TT---HHHHHHH-----------------EEEEEEE------------E-EET-----CHHHHHH CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeraseravkeevkeeekkledfdevree 71 
                 +++vG+ + GKS+l+  L   +   +g+ p T r + + ++  e+   +a + +++e+ek +++ + +++ 
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTGE-PTIGNYPFTTRGVSMGHVLRET---DAKISQFQEKEKYDDNTQSLADM 290
                 799***************9988.6788889999988887755544...34444444444444444444443 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.6e-05      0.07       2      22 ..     224     244 ..     223     374 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.6e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar 22 
                 +v++G+p +GK+tl++ L+  
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTG 244
                 8*****************853 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.9     2e+03     164     191 ..     166     193 ..     140     203 .. 0.65
   2 ?   10.3   0.1   0.00024      0.25      41     101 ..     294     353 ..     222     362 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.9
                 .----HHHHHHHHHHHHHHHHHHHT--- CS
  PF04548.11 164 taskeekeeQvkellelveaivkenggk 191
                 t +++++++  +e++ ++e++ k  +g+
  MMETSP0890-20130614|5442_1 166 TIQQSKNATNTEEVILVIENLLKDVEGR 193
                 5566677777778888888877777765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00024
                 EEEEEETTEEEEEEE--CGCCTTCHHCCHHHHHHHHHHHH-----EEEEEEE----SHHHH CS
  PF04548.11  41 kksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslgrfteede 101
                 +++r++ + + +V+DTPgl+  s+++ +   e    l   +  + a+++vl+l+    +d+
  MMETSP0890-20130614|5442_1 294 HVRRRRMDIIGQVVDTPGLLARSDDETRNDMEELT-LATMRFLPSAVVFVLDLSGAAGDDK 353
                 344456666669*******8877655544444443.3444555899999999985555555 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4      0.13   1.4e+02      58     101 ..      82     108 ..      47     169 .. 0.55
   2 ?    8.1   0.0    0.0019         2       2      24 ..     224     246 ..     223     345 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.13
   PF13671.1  58 ilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvri 101
                 +l +++rk+ ++++++i  a                 ++ pvr 
  MMETSP0890-20130614|5442_1  82 HLSQRVRKRSREQANAIGQA-----------------VSIPVRE 108
                 44455555544444444433.................3333333 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0019
   PF13671.1   2 vllvGlpGsGKstlaerllkklg 24 
                 v+lvG+p  GKstl++ l    +
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTGEP 246
                 89*************98865444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.043        46      37     125 ..     126     230 ..     103     230 .. 0.67
   2 ?    8.2   0.0    0.0021       2.2       7      27 ..     224     244 ..     217     308 .. 0.62
   3 ?   -2.8   0.0       5.4   5.7e+03      36      57 ..     422     446 ..     401     460 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.043
   PF13401.1  37 karvvfveapastspkel.lqkllsalglpakg.rltteellealqealrrrrtrlliiDEaqr.L......seealeelrslldd........etgvklvlvGtp 125
                 +  +++ +a + t    + ++++l +l+   +g   t+++ +++  +a +++++ +l+i ++   +      ++ +l+el+ l  +         +  ++vlvG p
  MMETSP0890-20130614|5442_1 126 EFATARLTARHRTREGYMsMEDILVELKNLRNGvLETSKATIQQSKNATNTEEV-ILVIENLLKdVegrikaKAHVLNELKLLGRAfrrlptvdLSTPTVVLVGAP 230
                 566667777777755555678888888887777555666666888888888888.*****9999677766554999999988844444444444777788888876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0021
   PF13401.1   7 lvvtGesGvGKTtllrrlarq 27 
                 +v++G + vGK+tl+r l   
  MMETSP0890-20130614|5442_1 224 VVLVGAPNVGKSTLVRLLSTG 244
                 799*************99885 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 5.4
   PF13401.1  36 e...karvvfveapastspkellqk 57 
                 +   +++++fv ++++    +l  +
  MMETSP0890-20130614|5442_1 422 NiqaPPEAIFVSVKHDRGTDDLKAA 446
                 2556788889988888855555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:01.12
# Mc/sec: 1031.29
//
Query:       MMETSP0890-20130614|5452_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00097   19.1   0.0     0.0019   18.1   0.0    1.5  1  PF00665.21 Integrase core domain
     0.0041   16.8   0.2       0.01   15.5   0.1    1.6  1  PF02796.10 Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
      0.015   15.3   0.1       0.03   14.4   0.0    1.4  1  PF07750.6  GcrA cell cycle regulator
        0.1   10.6   0.1       0.15   10.0   0.1    1.1  1  PF06160.7  Septation ring formation regulator, EzrA


Domain annotation for each model (and alignments):
>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.7e-07    0.0019       9      77 ..     137     203 ..     130     222 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.7e-07
                 EEEEEE.EET......TEEEEEEEES----EEEEEESSS-HHHHHHHHHH.HHHHS--SE...EE----- CS
  PF00665.21   9 wqiDvt.pgripskggkaylltaiddfsrfivaealkdessaetvadlleraverrggkepkrllsDngs 77 
                 +++D    ++  + g    +++aid +sr+ + +   +  +a t a++++r+v++   + p ++++D+g+
  MMETSP0890-20130614|5452_1 137 VHLDQNeKINLAKAG--IKFFAAIDGHSRYPIYWEAVTNLRAVTHARFFQRMVRNMMRV-PAHIVVDRGP 203
                 566666666666666..789**********9999999999*******************.*********7 PP

>> PF02796.10  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     3e-06      0.01       7      32 ..      12      36 ..       7      45 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3e-06
                STTSHHHHHHHHH----HHHHHHHHT CS
  PF02796.10  7 skndinrvvkLleeGisiskIAkevn 32
                 + +++rv++L+eeG s+s+IA +++
  MMETSP0890-20130614|5452_1 12 AE-RQERVKQLYEEGLSASAIATRLQ 36
                44.89*****************9875 PP

>> PF07750.6  GcrA cell cycle regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.7e-06      0.03       6      29 ..      13      36 ..      10      43 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.7e-06
   PF07750.6  6 ErvelLkklwleGlSasqiaaqlg 29
                Er e  k+l++eGlSas ia  l 
  MMETSP0890-20130614|5452_1 13 ERQERVKQLYEEGLSASAIATRLQ 36
                9*******************9885 PP

>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   4.5e-05      0.15     389     439 ..       9      55 ..       3      67 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.5e-05
   PF06160.7 389 eeiekeqeelseelqsLrkeekeAreklkelkkklseikRkleksnLPGlP 439
                 ++i +     +e++++L +e  +A + +++l++ +++i+R l+ ++LP  +
  MMETSP0890-20130614|5452_1   9 KAIAE----RQERVKQLYEEGLSASAIATRLQESIYKIRRDLQSMDLPLWS 55 
                 44444....457899*********************************655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:01.39
# Mc/sec: 715.46
//
Query:       MMETSP0890-20130614|5449_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-10   38.7   0.8    9.1e-10   38.0   0.6    1.3  1  PF13639.1  Ring finger domain
    2.8e-07   29.9   0.2    3.3e-06   26.4   0.0    2.7  3  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    4.3e-07   29.5   0.3    6.7e-07   28.9   0.2    1.3  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00016   21.6   3.5    0.00033   20.6   2.4    1.5  1  PF12678.2  RING-H2 zinc finger
      0.002   17.2   0.0     0.0031   16.6   0.0    1.3  1  PF04641.7  Replication termination factor 2
     0.0024   17.3   0.3     0.0043   16.5   0.2    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0073   15.6   0.1      0.014   14.7   0.0    1.5  1  PF04423.9  Rad50 zinc hook motif
  ------ inclusion threshold ------
      0.018   14.5   1.2      0.032   13.7   0.9    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
       0.02   14.3   0.3      0.041   13.2   0.2    1.6  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
      0.085   12.7   0.8       0.11   12.4   0.6    1.3  1  PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
      0.087   12.2   0.2       0.15   11.4   0.2    1.3  1  PF06658.7  Protein of unknown function (DUF1168)
       0.27   10.9   2.0       0.44   10.3   1.3    1.5  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.6     8e-13   9.1e-10       2      45 ..     147     190 ..     147     191 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 8e-13
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssnsCPlCrk 45 
                 eC i  +++  g+++++lpCgH+f ++ +++w++ ++sCP+Cr+
  MMETSP0890-20130614|5449_1 147 ECGIFKEPFGIGQKAITLPCGHIFLDDAIHRWFKDHHSCPVCRH 190
                 577777888669*******************************7 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   1.5e+03      36      46 ..     124     134 ..     124     144 .. 0.72
   2 !   26.4   0.0   2.9e-09   3.3e-06       6      57 ..     141     186 ..     136     187 .. 0.85
   3 ?    2.7   0.1     0.073        83       9      22 ..     181     195 ..     179     202 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.3
                 EHHHHHHHHHH CS
   PF13445.1  36 srealeklakg 46 
                 s+ a+++l+k+
  MMETSP0890-20130614|5449_1 124 SKRAINQLCKT 134
                 6889****994 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 2.9e-09
                 XXXXX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
   PF13445.1   6 hfhsifaCpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57 
                 h+   + C i ke ++   ++ ++LpCGh++  +a+++++k      ++  CP
  MMETSP0890-20130614|5449_1 141 HIDDGWECGIFKEpFGI-GQKAITLPCGHIFLDDAIHRWFK------DHHSCP 186
                 6667788********88.7778******************9......466777 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.073
                 XX-B-TTT-S.-SS. CS
   PF13445.1   9 sifaCpiske.qste 22 
                  +  Cp+++  + te
  MMETSP0890-20130614|5449_1 181 DHHSCPVCRHaLPTE 195
                 5667*****977554 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2   5.8e-10   6.7e-07       4      46 .]     147     190 ..     144     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5.8e-10
   PF13923.1   4 sCpiCleel..enpviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                 +C i +e +   +++i++pCgH +  + i +w++  + +CP+Cr+
  MMETSP0890-20130614|5449_1 147 ECGIFKEPFgiGQKAITLPCGHIFLDDAIHRWFKD-HHSCPVCRH 190
                 57777777744458899******************.*******96 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.4   2.9e-07   0.00033      22      75 .]     148     189 ..     127     189 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.9e-07
   PF12678.2  22 CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                 C+i ++++          +  +    +   CgH F  + i++W k + +CP+cr
  MMETSP0890-20130614|5449_1 148 CGIFKEPF-------GIGQ--KA---ITLPCGHIFLDDAIHRWFKDHHSCPVCR 189
                 55555555.......1111..22...3336***********************8 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.7e-06    0.0031     106     160 ..     138     192 ..     103     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.7e-06
   PF04641.7 106 rkdtkeapfiCpvtglelngktkfvalrkcGcVfsekalkev.keekvCpvCnkef 160
                 +++  +  + C + +  +   +k + l +cG++f + a+    k+++ CpvC +++
  MMETSP0890-20130614|5449_1 138 QQKHIDDGWECGIFKEPFGIGQKAITL-PCGHIFLDDAIHRWfKDHHSCPVCRHAL 192
                 5566778899********999999887.9**********776489999****9876 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   3.8e-06    0.0043      14      45 ..     160     190 ..     147     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.8e-06
   PF13920.1  14 dvlllpCgHlclCeeCaerllkrkkkCpiCrs 45 
                 +++ lpCgH+ +  +  +r+ k +++Cp+Cr 
  MMETSP0890-20130614|5449_1 160 KAITLPCGHI-FLDDAIHRWFKDHHSCPVCRH 190
                 57899*****.8899999999**********7 PP

>> PF04423.9  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-05     0.014      19      36 ..     181     198 ..     171     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-05
                 -----S-------HHHHH CS
   PF04423.9  19 akgcCPvCgreLdeeheq 36 
                 ++++CPvC + L++e e+
  MMETSP0890-20130614|5449_1 181 DHHSCPVCRHALPTEAEE 198
                 455************985 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   2.8e-05     0.032      12      41 .]     155     188 ..     130     188 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.8e-05
                 E.......BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20  12 n......elleCkHsfCskCirkilksrkkvkCPlC 41 
                         +l+C+H f  + i ++ k   + +CP+C
  MMETSP0890-20130614|5449_1 155 FgigqkaITLPCGHIFLDDAIHRWFK--DHHSCPVC 188
                 155556689*****************..8889**** PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   3.6e-05     0.041      28      56 ..     160     188 ..     135     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.6e-05
                 S....----EEEHHHHHHHHTTT--B------- CS
   PF11789.3  28 k....kCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                 k     C H+F  +aI + +  k++  CPv  C
  MMETSP0890-20130614|5449_1 160 KaitlPCGHIFLDDAIHRWF--KDHHSCPV--C 188
                 344557**************..999*****..7 PP

>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   9.5e-05      0.11     123     177 ..      11      70 ..       1     113 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.5e-05
   PF09849.4 123 aaq.......qpgyaqpap.gsFLggalqtAAGVaGGmlLanglenlfgghsqpeeiveaike 177
                 ++q       ++ ++  +p +s L+g+     G+  G l+a+++++++++ ++++e+ ++ + 
  MMETSP0890-20130614|5449_1  11 NEQnvrgnrnTNRAQ--RPrSSILRGM-GSSSGASSGELVASAIRHMLSQAQHESEASTVVAG 70 
                 222222332122222..336*****96.6789******************9988888776655 PP

>> PF06658.7  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013      0.15       8      38 ..      16      46 ..       8      48 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   PF06658.7  8 pekskektasappeivrnVqGSSAGAGSgeF 38
                  ++++++a+ p + +   +GSS+GA+Sge+
  MMETSP0890-20130614|5449_1 16 RGNRNTNRAQRPRSSILRGMGSSSGASSGEL 46
                4444555556888999999**********97 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.3   0.00038      0.44      51      81 ..     165     192 ..     134     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00038
   PF12861.2  51 kckhnfhlhcilkwletetskglcpmcrqtf 81 
                  c h+f +  i +w++ ++s   cp+cr ++
  MMETSP0890-20130614|5449_1 165 PCGHIFLDDAIHRWFKDHHS---CPVCRHAL 192
                 5**************98765...****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.73
# Mc/sec: 702.49
//
Query:       MMETSP0890-20130614|5457_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-39  134.0   0.4    4.7e-39  133.4   0.3    1.3  1  PF00270.24 DEAD/DEAH box helicase
    5.7e-21   74.0   0.0    1.5e-20   72.6   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
    0.00015   21.5   1.8    0.00027   20.7   0.0    2.3  2  PF04851.10 Type III restriction enzyme, res subunit
     0.0072   15.1   0.0      0.018   13.8   0.0    1.7  1  PF00437.15 Type II/IV secretion system protein
  ------ inclusion threshold ------
        3.6    5.9  21.8        5.1    5.4  15.1    1.2  1  PF08639.5  DNA replication regulator SLD3


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.3   1.7e-42   4.7e-39       2     173 .]      81     277 ..      80     277 .. 0.92

  Alignments for each domain:
  == domain 1    score: 133.4 bits;  conditional E-value: 1.7e-42
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H.......TTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT................SEEEEEESS-THHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk.......kttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr................lqvivlSATlpkdvkkl 173
                 +iQa +ip++lgg++++ aaeTGsGKTla+l+p+l++l  +++        +++ +ali++PtreL  q+l+ +k + k   kl++ +i+gg+    +q++ l +  vd++v+ pgr+++l +++   +s+++++VlDE+d++l qgf+d+l+qil+++ + +                  q+iv +ATl++ vkk+
  MMETSP0890-20130614|5457_1  81 EIQAITIPAVLGGENLVFAAETGSGKTLAYLLPILEKLRAEEQlgliedrIEKRPRALILVPTRELGIQVLSVCKALSKAgIKLSCRAIVGGSVGTGKQRKDLaNTAVDVLVASPGRFLKLWRQRDVFISRISVVVLDEVDTMLTQGFGDDLRQILKATLHTNFleikkldtplskvrkqAQLIVTTATLTNAVKKI 277
                 79************************************99877999876644667************************9999******999997778888888889****************98889999***************************9777447788899999999999***********999986 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   5.6e-24   1.5e-20       9      78 .]     370     438 ..     365     438 .. 0.95

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 5.6e-24
                 -EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   9 kvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +++++hge++++ere+ l++f++    +l++t+ a+rG+dlp v++Vi+fd+pr++ +y++r+GRt+Rag
  MMETSP0890-20130614|5457_1 370 HIFCYHGEMNSREREASLKSFRD-LGGILICTDLAARGLDLPVVDNVIMFDFPRDPITYLHRVGRTARAG 438
                 5789*******************.778*****************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.8e-08   0.00027      26      86 ..      94     170 ..      78     271 .. 0.81
   2 ?   -2.0   1.1      0.86   2.4e+03     118     118 ..     526     526 ..     446     590 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 9.8e-08
  PF04851.10  26 krglivmaTGtGKTlvaasliarlar................kflflvprkelleqaleefkkfeskkiefekknia 86 
                 ++++++++TG+GKTl ++  i++ +r                ++l+lvp++el  q l   k  +++ i++++  i+
  MMETSP0890-20130614|5457_1  94 ENLVFAAETGSGKTLAYLLPILEKLRaeeqlgliedriekrpRALILVPTRELGIQVLSVCKALSKAGIKLSCRAIV 170
                 6899**************766666666777777778888*****************998887777777777666664 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.86
  PF04851.10 118 t 118
                 +
  MMETSP0890-20130614|5457_1 526 S 526
                 1 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.7e-06     0.018     123     174 ..      88     139 ..      39     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.7e-06
  PF00437.15 123 qavqargnilvsGgTgsGKttll.nallaeinkdderivtiEDpvElqlegen 174
                  av    n++++  TgsGKt      +l+++ ++ e++ +iED +E + ++  
  MMETSP0890-20130614|5457_1  88 PAVLGGENLVFAAETGSGKTLAYlLPILEKLRAE-EQLGLIEDRIEKRPRALI 139
                 5666678999**********86427889999999.***********8887655 PP

>> PF08639.5  DNA replication regulator SLD3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  15.1    0.0019       5.1     288     392 ..     483     588 ..     481     592 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0019
   PF08639.5 288 klkgsmkisplkkkktssskeskeepgaplkrqs.essqkssrrslqrvltdeqk...sssssrapsLlrsrtnssieglkressenllpsllsrtksdlqkekrlekr 392
                 kl++s++ + +k+  +s++ ++k+++g++++++s +s++k s++++ r +  ++k   ++ ++++ +L+r+r++ss  g + +s  +++p   ++++ ++    r +kr
  MMETSP0890-20130614|5457_1 483 KLGPSIDNKHAKRVISSRTTAQKKDKGRSTSSSSsSSTKKPSTSRTRRSSHRDRKynvQAIEQQPRKLSRQRSTSSSVGFTASSLKKKRPPKAAQSNKNN---DRQQKR 588
                 99***********99999999999******99995444444444444444455558889*****************666666666677776666666665...444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:01.38
# Mc/sec: 1029.74
//
Query:       MMETSP0890-20130614|5460_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-17   62.1   7.5    6.2e-17   61.6   5.2    1.2  1  PF03798.11 TLC domain


Domain annotation for each model (and alignments):
>> PF03798.11  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   5.2   4.5e-21   6.2e-17       1     192 [.      72     285 .]      72     285 .] 0.80

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 4.5e-21
  PF03798.11   1 kfaerlvsliqavlssvaglivlssspelwegyperivgathfllkayylfalgYflydllvlllyekkrk...........dfalmvlHHvitlfllllsyvrglgryglavlllhelstpflslrkilkylrgk....skl...skdllfn.gvlfllsFfvcRlvlfpylillsyldvasisveaap......lvlpviclilllvL..qllnlyW 192
                 ++++rlvs+++a++s++    + ++ +  w++   + v  ++    + ++  +gY + d  v++    + +           d +l ++HHv+ ++ + +++++ l   ++a lll e+stpf+++r +++ +       sk+   + +++f+ gv+++ls+fv+Rl +  +++ ++++  + ++++ +       ++lpv+ l+ +l+L  +++n+ W
  MMETSP0890-20130614|5460_1  72 DWDSRLVSTANAIISIWNYGKLQKHLD--WHTSSFDAVVVPSCERDLAMAKIAGYLIFDGTVSFSIIIQMNqsvkkatpggyDDPLVLIHHVLIIVAFGIGVYFRLATAYMAALLLNEASTPFVNVRALINAT-YPpslrSKRprgLELIYFAnGVCLALSYFVFRLGWTAFVLAHAFR-AW-YDLWRVGivlngqYHLPVVSLLTMLLLghFIINCLW 285
                 699999999999999999889999998..777766666677788888999999*****94444443333332334577888855********************************************99999.44676622266689999999****************997666666.44.367777788888888888888888887779999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.74
# Mc/sec: 922.92
//
Query:       MMETSP0890-20130614|5459_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-51  175.4   0.0    1.5e-51  175.1   0.0    1.1  1  PF00459.20 Inositol monophosphatase family
     0.0009   18.0   0.0     0.0015   17.3   0.0    1.2  1  PF00316.15 Fructose-1-6-bisphosphatase


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.0   2.3e-55   1.5e-51       9     247 ..      23     274 ..      16     291 .. 0.83

  Alignments for each domain:
  == domain 1    score: 175.1 bits;  conditional E-value: 2.3e-55
                 HHHHHHHHHHHHHHHCC-HCCHSEEE...H..-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHCHHHHC--B...---.EEEEEEEEE--HHHH------EEEEEEEETTEEEEEEEEETTTTE...EEE-------EEE-.........EEEE----S........-GGG-CCBEE--SSSSSCHHHCCCHHHH.CCHHCCHEEEBE-SHHHHHHHHH----SEEEEEEEEBHHHH----HHHHH---EEEECSS-.....S.CSS- CS
  PF00459.20   9 avelaakagevlreafsnslvveeke...ksgeedlvtaadkaveelilealaakfpgdkilgeetlaagekselgesgltwvvDPiDGTknFirgipqfavsiglleegkpvlGviaaPllnq...lysaakgkGaflng.........qklkvsrap........ptseallatlfavssvkdtseaellekv.lsavsspgvrrvgssalklalvAeGkadayiefgrekkWDhaAGvaiveeaGGvvtdlkge.....gltllk 247
                 + e+a++ag++++e +++   +e+k+    + +  ++taadk+++e+i++al++kfp+++i++eet+ a+   e+++++++w+vDP+DGTk+Fi+++ qf+v+igl+ +gkp++Gv++ P+++    +y+++kg G  + +                 +        +++e+l + ++a++ +++t    +++k+ ++ ++s+     gss lkl++vAeG+a++y +  ++ +WD++A++aive aGG+v++l+ +     +l ++k
  MMETSP0890-20130614|5459_1  23 VAEIAKEAGKAIMEIYNKTPLSEWKKiadFKADGSPLTAADKKANEIICTALEKKFPSIPIMSEETVMASY-EERKTWKVYWCVDPLDGTKEFIKRNGQFTVNIGLVQDGKPIAGVVHVPAAEDgpiTYKGVKGLGPPVREtddplgydsY-------KsifaaafsESDEKLKIVASASHNTPETDA--FIKKYkNPILTSK-----GSS-LKLLMVAEGAAHIYPRCAPTSEWDTCAAHAIVECAGGEVLQLSTSgqpsgPLIYNK 274
                 57899************888899999988445566***********************************9.7777777*****************************************9886677**********99996655444441.......145555566888998888777777666666..5555504444444.....665.*****************99*********************9998866776555555 PP

>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-07    0.0015      27     113 ..      27     111 ..       6     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.1e-07
  PF00316.15  27 laeaaktiaskirkaglaellglagatnvtGdeqkklDvladdilieaLkaseavkvlaSEEeeelvvlegekegkyavaiDPlDGS 113
                  +ea k+i +  +k+ l e   + +   ++G    + D  a++i+ +aL+++     ++SEE+  +    ++k+ k+  ++DPlDG 
  MMETSP0890-20130614|5459_1  27 AKEAGKAIMEIYNKTPLSEWK-KIADFKADGSPLTAADKKANEIICTALEKKFPSIPIMSEETVMASYE-ERKTWKVYWCVDPLDGT 111
                 456667777777777776654.4456678999999**************************99877665.679999999*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.88
# Mc/sec: 912.25
//
Query:       MMETSP0890-20130614|5454_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-20   71.7  15.9    5.7e-12   45.6   2.2    3.0  3  PF00505.14 HMG (high mobility group) box
    4.1e-16   59.0   8.5    5.4e-09   36.2   0.7    2.9  3  PF09011.5  Domain of unknown function (DUF1898)
     0.0092   15.3   0.0      0.019   14.3   0.0    1.6  1  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.4         3   1.4e+04      14      28 ..     118     132 ..     117     134 .. 0.76
   2 !   45.6   2.2   1.2e-15   5.7e-12       1      69 []     152     218 ..     152     218 .. 0.98
   3 !   35.3   0.2     2e-12   9.2e-09       1      64 [.     230     289 ..     230     292 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3
                 HHHHHHHHHSTTS-H CS
  PF00505.14  14 eqraklkaenPdlkv 28 
                 +q+++ k+ nP+ ++
  MMETSP0890-20130614|5454_1 118 QQQQQQKKRNPKSNN 132
                 678888999998776 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 1.2e-15
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 pkRp++a+ +f+++ r++   + P+  ++e+sk l+e+Wk     +K  Ye+ ae++k ey+++ +eY+
  MMETSP0890-20130614|5454_1 152 PKRPRTAYHFFYDHRRQEELRKDPKRDNNELSKVLAEEWKTI--TDKTNYERLAEAAKVEYDRACREYE 218
                 8*****************************************..789********************96 PP

  == domain 3    score: 35.3 bits;  conditional E-value: 2e-12
                 ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHH CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyeke 64 
                 pk+p++a++lf+++q+      n + +v + sk +g  Wk+++ +e+k Y+++a+ +k +ye++
  MMETSP0890-20130614|5454_1 230 PKKPPTAYMLFFRAQHVP----NVGKQVDNFSKVVGTLWKSMTNDERKIYHDQAADLKFKYERA 289
                 8*************9975....66778***********************************98 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       2.3     1e+04      17      29 ..     118     130 ..     117     137 .. 0.72
   2 !   36.2   0.7   1.2e-12   5.4e-09       1      68 [.     149     212 ..     149     214 .. 0.93
   3 !   27.1   0.0   8.2e-10   3.7e-06       4      68 ..     230     288 ..     229     290 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.3
   PF09011.5  17 tmrpelkregpqv 29 
                 + ++++k+++p+ 
  MMETSP0890-20130614|5454_1 118 QQQQQQKKRNPKS 130
                 5678888888875 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.2e-12
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydr 68 
                 p +pkr+r AY +F+   r+e  r+ p+     +e sk + e+Wk+++  +K++Ye+ A + k +ydr
  MMETSP0890-20130614|5454_1 149 PIRPKRPRTAYHFFYDHRRQEELRKDPKR--DNNELSKVLAEEWKTIT--DKTNYERLAEAAKVEYDR 212
                 669**************999999999998..589*************7..69**************98 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 8.2e-10
   PF09011.5   4 pkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydr 68 
                 pk+++ AY+lF     +   + g+qv     ++sk ++  Wk+++++e++ Y+++A+ +k +y+r
  MMETSP0890-20130614|5454_1 230 PKKPPTAYMLFF--RAQHVPNVGKQV----DNFSKVVGTLWKSMTNDERKIYHDQAADLKFKYER 288
                 788899******..345556667777....59****************************99987 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.2e-06     0.019       9      35 .]     498     524 ..     495     524 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.2e-06
                 HHHHHHHTT------HHHHHHHHHHHH CS
  PF02037.22   9 LKaeLkkrGLptsGkKaeLieRLkehl 35 
                 L+++++ +GLp++G+K  L  RL+ +l
  MMETSP0890-20130614|5454_1 498 LRKMCATLGLPINGNKVILGNRLEMYL 524
                 9***************99988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:01.65
# Mc/sec: 912.07
//
Query:       MMETSP0890-20130614|5461_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.57
# Mc/sec: 1693.98
//
Query:       MMETSP0890-20130614|5467_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-60  203.9  22.0    2.3e-60  203.9  15.2    1.7  2  PF10234.4  Clusterin-associated protein-1
  ------ inclusion threshold ------
        0.2   10.5   4.9       0.23   10.2   2.7    1.6  2  PF09703.5  CRISPR-associated protein (Cas_Csa4)
       0.59    9.9   3.7        1.5    8.6   0.5    2.3  2  PF01291.12 LIF / OSM family


Domain annotation for each model (and alignments):
>> PF10234.4  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9  15.2     5e-64   2.3e-60      46     265 ..       2     254 ..       1     257 [. 0.95
   2 ?   -1.9   0.0      0.31   1.4e+03     174     195 ..     266     287 ..     253     309 .. 0.57

  Alignments for each domain:
  == domain 1    score: 203.9 bits;  conditional E-value: 5e-64
   PF10234.4  46 eedRVlfikavaeflvtkariklntkklYaadgyavkEllkvtsvlykamkst................eeeeeee...skakvdlssklsdlkaarqlaseitekgakLydlLekeldlkesrqkals..............rplelaevekalkeaikelaeelqklkaelenlksdeanLeekiekkkqelertqkrLkalqsvrPafleEyeklEeeLkklyeeYlekfrnldyLesqLeaknrkeqer 265
                 e dRV+fi++v++ l+tkarikln k+lYaadg av+Ellk++svl +a  +                 e+++e+     +++  lss+++++k+ar+la+eit+ ga+L dlL++e+++k++r+++l               ++ e   +ek + ++++ +ae++++ k++ e+l++de +Le+ki+kk++e+er+ krL++lq+vrPaf++Eye+lE+eL+k+y  Yle+frnldyL+++L+a++++e+e+
  MMETSP0890-20130614|5467_1   2 EDDRVEFITNVVTALATKARIKLNAKRLYAADGRAVRELLKLASVLFQANCAVahlnlpgeaqvkvkdsEAKNEDIvkhNQEEQPLSSRVKEIKQARALATEITDIGARLHDLLSREKQIKNERNAVLMflenavssvnsssaNSKEHRRLEKDINNILSIVAEDIETNKKQCEELEADERALETKIKKKQAEVERHDKRLRSLQTVRPAFMDEYERLERELEKQYAFYLERFRNLDYLQHELNAYDKAEDEK 254
                 89*********************************************998877899********9987644444446667778899*****************************************999***********99999*******************************************************************************************************9987 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.31
   PF10234.4 174 laeelqklkaelenlksdeanL 195
                  ++e+++ +++l+ +  d++nL
  MMETSP0890-20130614|5467_1 266 RKKEIENERDALRGAFCDDDNL 287
                 2344555555555555555555 PP

>> PF09703.5  CRISPR-associated protein (Cas_Csa4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   5.1e-05      0.23      51     131 ..      98     176 ..      87     189 .. 0.83
   2 ?   -1.4   0.0      0.18   8.1e+02     109     145 ..     175     210 ..     174     218 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.1e-05
   PF09703.5  51 raladq.esieegLrdaleevhaallgeestkesgrllsdkdvsvgasilnpervrvyleeleaeleklekkskkgkkslkg 131
                 rala    +i   L d+l+ ++++ ++++ +     +l+++++sv+ s  n+++ r+ ++ ++++l+++ ++++  kk+ ++
  MMETSP0890-20130614|5467_1  98 RALATEiTDIGARLHDLLSREKQIKNERNAV---LMFLENAVSSVNSSSANSKEHRRLEKDINNILSIVAEDIETNKKQCEE 176
                 4454333778889999999999988777777...88999***********************************99998765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.18
   PF09703.5 109 eeleaeleklekkskkgkkslkgkkkklltvpltLmP 145
                 eelea+   le k+kk++++++ + k+l +  +t  P
  MMETSP0890-20130614|5467_1 175 EELEADERALETKIKKKQAEVERHDKRL-RSLQTVRP 210
                 5788899999999999999999985554.44455555 PP

>> PF01291.12  LIF / OSM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.037   1.7e+02      41      99 ..      81     139 ..      69     189 .. 0.76
   2 ?    8.6   0.5   0.00032       1.5       7     103 ..     171     266 ..     165     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.037
                 --TTS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH CS
  PF01291.12  41 rvtdFPsedtlrelsrlvfLqtlvatLgavLtnltalqkklnkaaalllekLqaardni 99 
                 ++ + P     +e  +   L t ++ +ga L+ l   +k++++  +  l  L++a + +
  MMETSP0890-20130614|5467_1  81 NQEEQPLSSRVKEIKQARALATEITDIGARLHDLLSREKQIKNERNAVLMFLENAVSSV 139
                 55566777778888889999999999999999999999999888877667777666555 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00032
                 HHHHHHH---HHHHHHHHHH----SGGHHHHT----TTS-.------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH---H CS
  PF01291.12   7 qnqadllqdsssLldpYirlqgldvPklrelCrervtdFP.sedtlrelsrlvfLqtlvatLgavLtnltalqkklnkaaalllekLqaardnirGlr 103
                 ++q + l+  ++ l++ i+ +  +v   ++  r  +t  P + d   +l r  +L++ +a      +nl+ lq++ln + + + ek+++a++ i  lr
  MMETSP0890-20130614|5467_1 171 KKQCEELEADERALETKIKKKQAEVERHDKRLRSLQTVRPaFMDEYERLER--ELEKQYAFYLERFRNLDYLQHELNAYDKAEDEKIKQAQEQIDRLR 266
                 678888888888888888888888888888888888888888888888877..5777788777789*************************9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1865  (0.13641); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.05u 0.43s 00:00:01.48 Elapsed: 00:00:00.69
# Mc/sec: 1347.52
//
Query:       MMETSP0890-20130614|5470_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-213  709.9   9.0     7e-213  707.7   6.3    1.8  1  PF00012.15 Hsp70 protein
    5.3e-11   41.5   1.9    5.1e-06   25.2   0.0    2.8  3  PF06723.8  MreB/Mbl protein
    7.3e-05   21.6   0.1      0.049   12.3   0.0    2.4  2  PF08841.5  Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  707.7   6.3  1.5e-216    7e-213       1     594 [.       5     654 ..       5     661 .. 0.93

  Alignments for each domain:
  == domain 1    score: 707.7 bits;  conditional E-value: 1.5e-216
                 EEXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXXSEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.....................................XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXX...CCCESEEEEEXXETTSHHHHHHHHHHTX.XXEE.XSSXTTTTTTXXXTTCHHHCSSS......SXXXXXXECEEESS-E-EEEEE--.EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--..--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC....GGGSSHHHHHHHHHHHHHHHHHHT----......HHHHHHHHHHHHHCHH CS
  PF00012.15   1 viGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd....................................kernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklk...keeidevvlvGGstRiPkvqelvkelfg.keps.ksvnpDeavAiGaAvqaavlsge......eevkdllllDvtpLslgietlggv.mtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg..lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleee....kekvseaekekkveeaieelkeeleged......keeieakleelekvve 594
                 ++GiDLGtt+s+v+v+++++ve+ian+ g+r+ Ps+vaF ++er+vG+ Ak+q  + ++ntv++vkrliGrkf++++vq+++k +p++v++ +ng+++v+v   +++ +f+ eeisamvL+klketa++ylg++vt avitvPaYFndaqRqatk A+kiAGL+vlRi+neptaaala+Gldkk                                     +e+  l+fDlGggt dvSil++++Gvfevkatag+thlGG dfD++++e++++ef k +++dl++++ka+ rL++++e+aK+ LS+  +t+++++ie + + g+d++ +++Rakfe ++++l++++lepve++lkda++    + +i++vvlvGGstRiPk+q+l++e+f+ ke++  svnpDeavA+Ga++qaavl+g+      +  +d+ll+DvtpL+lgie+ ++  m+k i+rnt ip +k++ ++t   nqt+v+i++++gere+++dn+ lg+f+ltgippap+G+pqi+V+f+idanGil+v+a+ +s+g++++iti+ + +  ls ++i+km+++ e+++++d++ + +i+ak +le+++++l+++  ++      k+++++  ++++++i+ +k+ +++         +++++k+++le  v 
  MMETSP0890-20130614|5470_1   5 AVGIDLGTTYSCVGVWQNNRVEIIANDMGTRIMPSYVAFFDHERVVGDGAKNQFSQHIQNTVYDVKRLIGRKFDEETVQEDMKRWPFEVNRGNNGEPKVKVIDGDKELEFAVEEISAMVLSKLKETAQNYLGREVTAAVITVPAYFNDAQRQATKAAAKIAGLEVLRILNEPTAAALAFGLDKKIekaifqndstdldseqnefdldevkdqveietkeeqEESLALIFDLGGGTLDVSILALSRGVFEVKATAGNTHLGGGDFDACMAEYFCTEFSKIYKKDLRTSSKAMGRLHQHCERAKRRLST--NTTATIDIENIID-GIDFEHTISRAKFEAINAHLFKQCLEPVERCLKDARILkqrVRKINSVVLVGGSTRIPKIQQLLSEFFQgKELTfGSVNPDEAVAYGATIQAAVLTGQiddsanNVLSDILLMDVTPLTLGIEVGDDAqMSKQIKRNTRIPVEKNKLYTTSRTNQTQVRIRIFEGEREFTRDNHFLGQFDLTGIPPAPAGTPQIDVKFSIDANGILSVRATCNSSGSTQQITIQRDAKshLSPEAIQKMIQDGEKYQARDAAIRLKIDAKSQLETTCEQLKRATWDDtddlYAKLDQDAR-TELSDKIALVKTWISKPTtldlsqPSDFQEKQKDLEDFVR 654
                 59*************************************************************************************************************************************************************************************9889*******************************997788899********************************************************************************..9***********9.***********************************986222567899*********************999987368********************98877756679****************998769*********************************************************************************************9887667****************************************99887774444555555555.5555555555444433332223447778888888877665 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.095   4.3e+02       3      17 ..       5      19 ..       3      50 .. 0.81
   2 !   14.2   0.3   2.5e-06     0.011      86     140 ..     132     186 ..     113     194 .. 0.77
   3 !   25.2   0.0   1.1e-09   5.1e-06     145     317 ..     228     414 ..     221     422 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.095
                EE--B----EEEE-- CS
   PF06723.8  3 dlgiDLGtantlvyv 17
                 +giDLGt+   v v
  MMETSP0890-20130614|5470_1  5 AVGIDLGTTYSCVGV 19
                689*****9988854 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.5e-06
                 -----SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------ CS
   PF06723.8  86 kkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglp 140
                 ++    + +  vi+vP   ++ +r+A k aak aG +   +++ep aAA+  gl+
  MMETSP0890-20130614|5470_1 132 QNYLGREVTAAVITVPAYFNDAQRQATKAAAKIAGLEVLRILNEPTAAALAFGLD 186
                 333333566789*************************************988886 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 1.1e-09
                 ---EEEE-----EEEEEE----EE.....EEEEES----HHHHHHHHHHHHHHSB----HHHHHHHHH----S--HHHH........-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH.---EEE---------HHHHHHH-----EE..-SSTTTTTT----- CS
   PF06723.8 145 sgnmvvdiGggttevavislggiv.....tsksvrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeee........kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivd.rgivltGGgallkgldkllseetglpvkv..aedpltcvakGtgk 317
                 s  ++ d+Gggt +v++++l+  v     t+   +++G ++d  + +y  ++++ +  ++  ++  +++g ++++ e+         + +i   +++ g+  e ++s ++ +   ++ +++ +e v++ L+++   L   + + +++vl+GG++ +  +++llse ++ +  +  + +p ++va G+ +
  MMETSP0890-20130614|5470_1 228 SLALIFDLGGGTLDVSILALSRGVfevkaTAGNTHLGGGDFDACMAEYFCTEFSKIY-KKDLRTSSKAMGRLHQHCERAkrrlstntTATIDIENIIDGIDFEHTISRAKFEAINAHLFKQCLEPVERCLKDARI-LKQRVRKiNSVVLVGGSTRIPKIQQLLSEFFQGKELTfgSVNPDEAVAYGATI 414
                 5579**************997544121113345789****************98554.444444445555444332222122544457789999*****************9999999************99765.6666654489*******************998664332267899999999875 PP

>> PF08841.5  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00054       2.5     137     168 ..     231     261 ..     221     263 .. 0.84
   2 !   12.3   0.0   1.1e-05     0.049     259     310 ..     351     403 ..     306     422 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00054
   PF08841.5 137 ailDlGaGstDasiinkegkvtavhlaGaGem 168
                  i DlG+G+ D si+  ++ v  v  a aG++
  MMETSP0890-20130614|5470_1 231 LIFDLGGGTLDVSILALSRGVFEV-KATAGNT 261
                 589*************99999985.5788875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.1e-05
   PF08841.5 259 nalRalkkvs.PtgnirdiefvvlvGGsalDfeipqlvteaLseyrvvaGrgn 310
                  + R+lk      + +r+i+ vvlvGGs+   +i ql++e  +  ++  G  n
  MMETSP0890-20130614|5470_1 351 PVERCLKDARiLKQRVRKINSVVLVGGSTRIPKIQQLLSEFFQGKELTFGSVN 403
                 567999998867899**********************9998887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.87
# Mc/sec: 2046.54
//
Query:       MMETSP0890-20130614|5478_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.32s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 591.10
//
Query:       MMETSP0890-20130614|5487_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1100.0   0.2          0 1099.8   0.2    1.0  1  PF03971.9 Monomeric isocitrate dehydrogenase
  ------ inclusion threshold ------
       0.03   13.7   0.4       0.12   11.7   0.1    2.0  2  PF08521.5 Two-component sensor kinase N-terminal


Domain annotation for each model (and alignments):
>> PF03971.9  Monomeric isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1099.8   0.2         0         0       2     733 ..       5     736 ..       4     738 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1099.8 bits;  conditional E-value: 0
   PF03971.9   2 iiytltdeapalatysllpivkafaksa.gidvetsdislagrilaefpdvlteeqrvsddlaelgelakspdaniiklpnisasvpqlkaaikelqdkGyavpdypedpktdeekavkerydrikGsavnpvlreGnsdrrapkavknyarknphsmGawskaskshvasmregdffaseksvvlakatkvkielvakdGkvkvlkekvalkdgeiidaavlskkallafleeqlkdakekgvlfslhlkatmmkvsdpiifGhavkvfykdvfdkygdlldelGvdvnnGlgdlyakieslpaeq.reeieadiqavyakrpelamvdsdkGitnlhvpsdvivdasmpamirasGkmwgkdGklkdtkavipdstyagvyqevidfckehGafdpttmGsvpnvGlmaqkaeeyGshdktfeleadGvvrvv.daaGevlleesveaGdiwrmcqvkdapikdwvklavtrarlsnvpavfwldearahdkelikkveaylkdhdteGldikilspveaikfslerlkkGkdtisvtGnvlrdyltdlfpilelGtsakmlsivplmaGGGlfetGaGGsapkhvqqlveenylrwdslGeflalaasleelgiktgnakakvlakaldaatgklldndkspsrkvGeldnrGshfylalywaqalaaqdedaelkakfaslakaltekeakivaelnavqGkpadiGGyyapdlekvaavmrpsktfnaal 733
                 ++yt+tdeapalat+sllpiv+af++ +  ++++  dislagrila+fp+++ e++rvsd+la lg+l+k+p++ +iklpnisas+pql+aai elq++Gy++p yp+   t ee+ +k ry++i+GsavnpvlreGnsdrr  k vk++a+ nph+   ws +skshva+m++gdff+seks v  +  +v++e+ +   ++ +lke + l+ +eiidaa +  + l++f+ ++++dakekgvlfslhlkatmmkvsdpi+fGhav+ fy+d ++k++d l+ +G+d   G+gd+ +k+++l++++ r++i++d++a  a++p +amvdsd+Gitnlhvps+vi+das+pa ir +Gkmw+ +G+l dtk vipd++ya+vy+ v ++c ++Ga+dp+ +G+v nvGlmaqka+eyGsh+ktfe+++dG+vrv+ + +G+vlle+ v+ Gdiwrmcq+ d  ikdw++lav rar++n p++fwlde+rahd+ li+kv++yl++hdt+Gldi+i spvea++++l+r ++G dtisvtGnvlrdyltdlfpilelGtsakmlsivpl+aGGGlfetGaGGsapkhvqqlv+en+lrwdslGe+lala++le+l+ kt + k k+la al++a+ ++l+ndksp+rk G+ld rG+h++la ywa+ala+q+ d +l+ak+a++a+ l++kea+i++e+++    ++d+GGyy+ d++k+ a+mrps+t+n ++
  MMETSP0890-20130614|5487_1   5 LLYTYTDEAPALATHSLLPIVRAFTEPScKVSLKLVDISLAGRILAAFPENISEDKRVSDELAVLGQLVKQPQTLVIKLPNISASIPQLEAAILELQSQGYNIPSYPKICTTTEEEGIKSRYAKILGSAVNPVLREGNSDRRVAKPVKQFAQANPHKNYPWSPDSKSHVAYMSHGDFFGSEKSYVARENLDVRVEFEN--TEKIILKESILLQMNEIIDAATMNAEELRQFYIREMNDAKEKGVLFSLHLKATMMKVSDPIMFGHAVECFYQDFLKKHKDALHLIGFDSRSGIGDIISKLSQLDNQTeRATITRDLEAFLAEHP-IAMVDSDRGITNLHVPSNVIIDASVPAAIRDGGKMWDPQGQLADTKFVIPDRSYAKVYEVVFEDCIKNGALDPSKIGAVSNVGLMAQKAQEYGSHNKTFEMKDDGIVRVInNVTGDVLLEHTVQKGDIWRMCQTTDIAIKDWIRLAVCRARATNSPTIFWLDENRAHDRALIQKVHTYLNNHDTSGLDISIKSPVEAMRITLARSRQGLDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQLVKENHLRWDSLGEYLALAVALEDLAAKTSDIKVKLLAAALNTAISRILENDKSPKRKKGQLDTRGAHYFLAYYWARALASQSYDPSLAAKYAPIAQELEDKEAQILSEISSSGAISVDLGGYYNMDFAKADAIMRPSVTLNTII 736
                 78***********************965389*********************************************************************************************************************************************************************65..67899**************************************************************************************************98753899*******999998.9*************************************************************************************************************5568*****************************************************************************************************************************************************************************************************************************************************************************************************998 PP

>> PF08521.5  Two-component sensor kinase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.15     1e+03      22      56 ..     490     524 ..     489     533 .. 0.74
   2 ?   11.7   0.1   1.8e-05      0.12      10      51 ..     660     701 ..     656     706 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.15
   PF08521.5  22 neayDraLlasaraiaeqvevedgelqvdlPpaal 56 
                 n+a+DraL +++++  ++ +++  +++++ P +a+
  MMETSP0890-20130614|5487_1 490 NRAHDRALIQKVHTYLNNHDTSGLDISIKSPVEAM 524
                 79*******99988777766655556666666665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1.8e-05
   PF08521.5  10 lllayrvarraaneayDraLlasaraiaeqvevedgelqvdl 51 
                 ++lay  ar++a+++yD +L+a+   ia+++e ++ ++  ++
  MMETSP0890-20130614|5487_1 660 YFLAYYWARALASQSYDPSLAAKYAPIAQELEDKEAQILSEI 701
                 789****************************99988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:01.23
# Mc/sec: 1441.71
//
Query:       MMETSP0890-20130614|5496_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-55  187.1   0.0      7e-55  186.4   0.0    1.3  1  PF02450.10 Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.14   11.9   0.0    1.6  2  PF12697.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF02450.10  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   0.0     1e-58     7e-55       2     378 ..      78     526 ..      77     554 .. 0.80

  Alignments for each domain:
  == domain 1    score: 186.4 bits;  conditional E-value: 1e-58
  PF02450.10   2 leiWldln....vflkrlvdcwikllemvldksvq..lveldpgvkirppgfg..aaqsveklDksviagyl.iwkklvknlvkiGyeknktvsaaPYDWRlspa...erddyfkkLkelieealkls.gkkvvLiaHSmGnllvlyfLkwveaei..WvdqhikafislgapllGsvkavkallsGenkgtpilsslslkslekfp...akerlltsrtwg....mlpkgaakkykdv.ekld..edelnlktdslgknirq...........kedkktknvtvkdiveffqdvsletlls..keysqgvlykeke...vddkvvnpLeanlp.apikkvyciygvglptergyyyaee.........pdsedvldgiveteqkves........................nvilsdgDgtvpkvsls.vc.kkwagtkve...ievvhekplrg.r 378
                 le+W ++       ++r++ +++  ++ +ld+ +   +++ldp+   +p++++  aa+++ ++D   + g+l  w + + nl+ +Gy +  +  aa YDWRl p+   +rd yf++L+ +ie+ l+ + g kv +i+HS+G+++ +yf++wvea    Wv++++++   +g+ llG++k ++ ++sGe+ +  ++ +  l+ +e+     +      +rtw     +lpkg    ++   ++++   d++ +++ +  + i q           ++    + +  + + ef+ ++s+e++    +ey    + ++ +    +  ++npL ++lp ap  k+yc+ygvg pt+r   + ++         p      +  ++te  ++                          +  +dgDgtvp  sl+ +c + w+ +k +   + v +++ l++  
  MMETSP0890-20130614|5496_1  78 LEVWQGTGcyadATRQRVWSSRSSTTTFLLDPECLqkHLMLDPKSWDDPQDIRvrAASGLSSAD---AFGPLnLWGEFIVNLAMLGYDETSVALAA-YDWRLDPTrleRRDAYFTRLQRTIETLLETNcGRKVAIISHSLGGNHAFYFFHWVEARRsgWVEKYVDSLSFVGGALLGAPKCLPYIVSGEMTDAFQIGEFFLRLSEMHGglsRDAIFNLTRTWSsvpsLLPKGGNTFWSLPpAPISkiKDQIDKENLTI-QSINQtvpllelahprNQSITAQSLSADAATEFLYEISPEYMRLvdQEYDLRAQNNNTNttlDPRAWSNPLLTPLPyAPSLKIYCLYGVGRPTPRIIRFVPNtaatknastP----LNETPIPTEIDQQQttlkefllehavhlgtderqfeisRISDEDGDGTVPLLSLGyMCvEGWKSQKLNparVRVITKEYLHQeI 526
                 68999999999999********************889****************99*********...779999***********************.**********99*******************************************987777*********************************999999999954444343233334567899999998888877777653122221134444444444.333334666665555444444556677788999999999999556544444444444448888999***********************************99999855552....444444444444334555799999999999*****99999999************96735677777767776666666667642 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.76   5.2e+03     133     162 ..      19      48 ..       6      86 .. 0.51
   2 ?   11.9   0.0     2e-05      0.14      14      86 ..     149     224 ..     136     419 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.76
                 ..HHHHH-----HHHHHH--GGGG....GG CS
   PF12697.2 133 rafarlfdgdelealvradaaalaellraa 162
                 ++f + +  +++++l+++++++++e l+++
  MMETSP0890-20130614|5496_1  19 HGFRDCLEHKQMQSLLERNTTRVYEQLNRN 48 
                 333344444455555555554444444443 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2e-05
                 --HHHHHHT.TTSEEEEE-----------S......S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH- CS
   PF12697.2  14 wrplaeaLa.agyrvvapDlpGhGrSdrppd...ydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaar 86 
                 w +++  La  gy+  ++ l  + +   p +    d++ + +l + ++ ll++ ++r+v ++ HSlGg +a ++ + 
  MMETSP0890-20130614|5496_1 149 WGEFIVNLAmLGYDETSVALAAYDWRLDPTRlerRDAY-FTRLQRTIETLLETNCGRKVAIISHSLGGNHAFYFFHW 224
                 55566666644665333333333333333322223333.34444788999999999************999887743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.89
# Mc/sec: 1755.53
//
Query:       MMETSP0890-20130614|5498_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-12   45.3   0.0    6.5e-12   44.9   0.0    1.1  1  PF04139.8 Rad9


Domain annotation for each model (and alignments):
>> PF04139.8  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.8e-16   6.5e-12      34     251 ..       6     244 ..       3     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 4.8e-16
   PF04139.8  34 Sayalflfkks.fFqkylaekevsdqirckilvKsvlsvfrslsake.....ktvekikisi....dekksrliiqllckhgvtkthslsleesesl.qavfdketcpsklrissrvLsdllehfsssleeitl.......elak.ervllksyteeekdnkkalstelsideeeFeqyqlqed......veitlslKefrailvfaeslsls.lalafseaGkPlllsleklslieaefiLaT 251
                 + y+ ++f+ + fF k   +   +  i ck+l Ks+l+ +r ++ak      + v +++i+     d+++ rl +++  + g ++ ++l +e+s+     +f +e+ + ++++ + ++  + eh +s   ei++         ++ e  +l + ++++  + k  + ++ i+e + + ++l ++       ++ +  K f+a+  fa++  +s l+l   ++G+P++l  e+     a+f ++T
  MMETSP0890-20130614|5498_1   6 ACYGEIKFSGDiFFTKV--HRVERTSIGCKVLAKSLLPALRRATAKSgvggiSAVYTLHIRHergdDDEAPRLTLEIEHEDGTRRRWRLFYEQSDLAfVPEF-EERENGEISAAPLQFLSIFEHVGSGNIEISIedgllitG-NPsETDSLPNIEDNATIR-KRAQAQIRISETDLDILKLPNTilpgheFKLHFHAKQFKALAKFADIFGSSvLRLRCTQPGQPIALDAESPAGATATFLIST 244
                 67999999987255666..8889999***************5554432212245666666669998888999**********************99845566.5666889999999999***************99998742.332445667776666666.9*************************99*******************97763699**************9999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.68
# Mc/sec: 1120.65
//
Query:       MMETSP0890-20130614|5503_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-27   92.6  13.3      1e-09   37.7   0.0    4.1  4  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.025   13.3   0.3      0.031   13.0   0.2    1.2  1  PF02166.11 Androgen receptor
       0.06   12.0   3.2        0.1   11.2   1.3    2.1  1  PF08801.6  Nup133 N terminal like
       0.06   13.6   0.1        0.7   10.2   0.0    2.4  1  PF12876.2  Sugar-binding cellulase-like


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.9   3.1e-08   0.00011       7      39 .]       2      35 ..       1      35 [. 0.97
   2 !   37.7   0.0   2.9e-13     1e-09       4      39 .]      47      83 ..      45      83 .. 0.97
   3 !   22.2   0.0   2.3e-08     8e-05       4      37 ..      91     125 ..      88     127 .. 0.91
   4 !   17.4   0.4   7.9e-07    0.0027       6      38 ..     163     196 ..     159     197 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.1e-08
                EESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  7 lrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                ++gH+s V++va++   + ++ s ++D+ i +Wd
  MMETSP0890-20130614|5503_1  2 YSGHSSVVEDVAWHCGtPYIFGSVGDDKRILIWD 35
                68*******************************9 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 2.9e-13
                EEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  4 katlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                +++l +H++ ++++af+p+   +la++S+D +i+lWd
  MMETSP0890-20130614|5503_1 47 IQVLNAHEKDINSLAFHPThNFILATASSDQSIKLWD 83
                689*********************************9 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 2.3e-08
                 EEEEESSSSSEEEEEEESS.STEEEEEETTSEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspd.gpllasgSrDgtirl 37 
                 + +l+gH+s ++ + ++p+ ++ll s+++D+ + +
  MMETSP0890-20130614|5503_1  91 IVSLQGHQSDIYQLQWNPTfPSLLSSCGADRRVII 125
                 5689***************************9865 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 7.9e-07
                 EEESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                 +  gHt+ V+  ++s +  +l+as  +D+ + +W
  MMETSP0890-20130614|5503_1 163 VHGGHTGKVSEHSWSSScANLVASVAEDNHLQIW 196
                 679******************************* PP

>> PF02166.11  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.2e-06     0.031     142     181 ..     107     153 ..      98     190 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.2e-06
                 XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXX CS
  PF02166.11 142 gptfpg.lsscsadlkdilseagtmqllqqq......qqeavsegss 181
                  ptfp  lssc ad + i+s+ + +   qqq      qq   +e  s
  MMETSP0890-20130614|5503_1 107 NPTFPSlLSSCGADRRVIISDISRLGTTQQQtplqssQQTNYTEQQS 153
                 69***9459***********999887777662221113333444333 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.3     3e-05       0.1     180     227 ..      46      93 ..      21     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3e-05
   PF08801.6 180 sllpsaseqeteivqlridssr.rilytlsskgtirvwdlspsgeslks 227
                 s++   ++ e++i +l+ ++++  il t+ss+ +i+ wd+ + ++ ++s
  MMETSP0890-20130614|5503_1  46 SIQVL-NAHEKDINSLAFHPTHnFILATASSDQSIKLWDIRNMSNAIVS 93 
                 44222.555999**********99****************997776666 PP

>> PF12876.2  Sugar-binding cellulase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00021       0.7       4      39 ..      24      61 ..      21     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00021
   PF12876.2  4 qfgnddrilgwdlwNEvpdnya..dsypaersakkaer 39
                  g+d+ril+wd  N  p+  a  ++++a+++++++ +
  MMETSP0890-20130614|5503_1 24 SVGDDKRILIWDTRNASPKGAAsiQVLNAHEKDINSLA 61
                6799************9995555677777887774444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 688.53
//
Query:       MMETSP0890-20130614|5494_1  [L=2007]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-08   33.0   0.7    6.9e-08   32.0   0.5    1.5  1  PF00397.21 WW domain
  ------ inclusion threshold ------
      0.025   14.6   0.0      0.049   13.7   0.0    1.5  1  PF00169.24 PH domain
       0.83    9.4  22.8        1.1    9.1   0.1    7.9  7  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.5   1.5e-11   6.9e-08       4      31 .]       2      28 ..       1      28 [. 0.96

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.5e-11
                SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21  4 gWeersddddGrvYYyNheTgetqWekP 31
                gWeer d + Gr+++++h +++tqW++P
  MMETSP0890-20130614|5494_1  2 GWEERQDAQ-GRTFFVDHVNKKTQWTRP 28
                8*****999.*****************9 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.049       3      96 ..     136     244 ..     134     245 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-05
                 BEEEEEEEE.TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTS........SCTTSSSSEEEEEETTT................CEEEEEESSHHHHHHHH CS
  PF00169.24   3 keGyllkks.ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkf........alqkesnnyfeitfkdv................esyllsaeseeerkrWv 96 
                 +eG+l  ++  +   w+k+y+   ++ L ++ ++k   + + +  + l+++++ + +s  +        a        f+i    +                 + ++ a+s+++r +W+
  MMETSP0890-20130614|5494_1 136 YEGWLQTRKeVKGLGWRKVYARVCGSTLAVYTDDK---KPKAELRVELTGAELSESESLGKlvskkdeiA-------RFKIAPSAQnnkgedsilgkakialAETEFAADSDDQRAEWL 244
                 799*9988878999********************9...57777888888888888888865444333330.......333333333333333333334444669**************6 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4      0.12   5.7e+02      16      36 ..     351     371 ..     339     372 .. 0.87
   2 ?    9.1   0.1   0.00024       1.1       8      36 ..     390     418 ..     390     419 .. 0.96
   3 ?    1.0   0.1     0.081   3.7e+02      13      35 ..     445     467 ..     441     469 .. 0.86
   4 ?   -3.0   0.1       1.5   6.9e+03      16      31 ..     815     831 ..     812     834 .. 0.70
   5 ?    1.7   0.0     0.049   2.2e+02       2      16 ..    1024    1038 ..    1023    1052 .. 0.81
   6 ?    5.8   0.3    0.0025        11      10      41 .]    1680    1711 ..    1672    1711 .. 0.89
   7 ?   -0.8   0.0       0.3   1.4e+03      11      23 ..    1802    1816 ..    1796    1830 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.12
                 HHHHHHC-SSHHHHHHHHHHH CS
  PF00514.18  16 pLvqLLksgdeevqeeAawAL 36 
                 +L+ LL+  d+++q+ Aa+AL
  MMETSP0890-20130614|5494_1 351 KLIPLLTAADDGLQRWAAAAL 371
                 89*************999999 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00024
                 HHHCHHHHHHHHHHC-SSHHHHHHHHHHH CS
  PF00514.18   8 vieaGavppLvqLLksgdeevqeeAawAL 36 
                 ++++G+v  Lv+LL+  + +vq  A++AL
  MMETSP0890-20130614|5494_1 390 IVDSGGVFTLVALLSASSRDVQSHALAAL 418
                 79**************************9 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.081
                 HHHHHHHHHC-SSHHHHHHHHHH CS
  PF00514.18  13 avppLvqLLksgdeevqeeAawA 35 
                 +  +L  L  ++d++v ++A+ +
  MMETSP0890-20130614|5494_1 445 GCAALAPLCADPDPRVAKAALDC 467
                 67899***************976 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 1.5
                 HHHHHHC.-SSHHHHHH CS
  PF00514.18  16 pLvqLLk.sgdeevqee 31 
                 +L q+L+ +  +e++++
  MMETSP0890-20130614|5494_1 815 ALAQCLQsTAPTELRRA 831
                 799****6666666665 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.049
                  HHHHHHHHHCHHHHH CS
  PF00514.18    2 penkqavieaGavpp 16  
                  p   +av+eaGav++
  MMETSP0890-20130614|5494_1 1024 PARADAVVEAGAVQA 1038
                  56679********98 PP

  == domain 6    score: 5.8 bits;  conditional E-value: 0.0025
                  HCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18   10 eaGavppLvqLLksgdeevqeeAawALsNLaa 41  
                  +a  +++L++L +s ++++ + A+ +L N aa
  MMETSP0890-20130614|5494_1 1680 RADLLDALLKLCDSISQRTATRALVVLANVAA 1711
                  566799***********************985 PP

  == domain 7    score: -0.8 bits;  conditional E-value: 0.3
                  CHHHHHHHHHHC..- CS
  PF00514.18   11 aGavppLvqLLk..s 23  
                  +Ga++ L+ +L+   
  MMETSP0890-20130614|5494_1 1802 SGAIECLIPCLSdnV 1816
                  79*********9544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2007 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       722  (0.0528087); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.54u 0.38s 00:00:02.92 Elapsed: 00:00:01.90
# Mc/sec: 2531.31
//
Query:       MMETSP0890-20130614|5501_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   92.5   0.4    1.4e-26   92.5   0.2    2.7  3  PF00012.15 Hsp70 protein
    1.2e-15   56.7   6.2    2.2e-11   43.1   0.1    2.9  2  PF13414.1  TPR repeat
    9.4e-13   46.9   1.8    1.5e-06   27.5   0.0    4.4  4  PF07719.12 Tetratricopeptide repeat
    5.2e-11   41.5   0.7      5e-05   22.6   0.0    4.1  3  PF00515.23 Tetratricopeptide repeat
    4.9e-08   32.6   1.5    1.9e-07   30.7   0.4    2.5  2  PF13371.1  Tetratricopeptide repeat
    4.4e-07   30.2   2.2    6.4e-06   26.5   0.2    3.1  2  PF13432.1  Tetratricopeptide repeat
    2.2e-06   26.9   0.1      0.023   14.3   0.0    3.6  4  PF13181.1  Tetratricopeptide repeat
    7.2e-06   25.6   0.1    1.4e-05   24.7   0.1    1.5  1  PF02782.11 FGGY family of carbohydrate kinases, C-terminal domain
    0.00024   21.3   2.6     0.0057   17.0   0.1    3.8  3  PF13428.1  Tetratricopeptide repeat
    0.00024   20.8   1.5     0.0022   17.7   0.2    3.0  2  PF13424.1  Tetratricopeptide repeat
     0.0052   16.3   0.1        2.2    8.1   0.0    3.2  2  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.8   0.4       0.31   11.4   0.0    3.1  3  PF13174.1  Tetratricopeptide repeat
      0.029   14.4   1.4       0.26   11.4   0.0    3.3  4  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.2   1.3e-29   1.4e-26       2     381 ..       9     375 ..       8     402 .. 0.81
   2 ?    1.9   0.3     0.033        35     496     593 ..     385     484 ..     372     493 .. 0.66
   3 ?   -5.8   5.1       7.1   7.5e+03     501     589 ..     498     537 ..     465     582 .. 0.49

  Alignments for each domain:
  == domain 1    score: 92.5 bits;  conditional E-value: 1.3e-29
                 EXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXXSEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX......XEEEEEEEEXXXXEEEEEEEEEXX...EEEEEEEEEETTXXX..XHHHHHHHHHHHHHHHHHSS.XG.GGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXX.CCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSX.TTTTTTXXXTTCHHHCSSSS CS
  PF00012.15   2 iGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd.....kernvlvfDlGggtfdvSileiedG...vfevkatagDthlGG..edfDealvehlveefkkkegidl.skdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklk.keeidevvlvGGstRiPkvqelvkelfg.kepsksvn.pDeavAiGaAvqaavlsgee 381
                 +G+D+G  +s+++  +g   +++ ne g +t  s+ ++ ++er +GeaA  q+ tn++ t+     liG+ + +    +   +   ++++keng++vv+    +e+ ++    + a+++kkl +     lg+  +++  +vP+ ++d+q   ++ A ++A L+ + i     +    Y l+++      + r+v+++D+G   +++Si+++++      e +at + th G      D+al ++l ++  +++  ++ +  +k   rL + ++ ++k LS+   +e+++ +e lde ++d+s++ltR +f + +e++l     +++++l++ k k +  id+v+++GG  R+   ++++ e+f+  e   +    D  +A GaA++a  l+ ++
  MMETSP0890-20130614|5501_1   9 VGLDVGGSTSAISLPNG---DIVRNELGGHTSSSLCSYLNQERFIGEAAVAQVSTNASGTI-----LIGELMYE----ESALKSHRRFQEKENGNVVVNYG-DNENFELDKASVLAALVKKLAK-----LGK-TSKVSFAVPTCWDDSQLSLVATAVQVAKLELIAIPKYEECLCAVYVLKHTPsislgERRVVAMIDIGRCQTTCSIVAFSNPeekEPETLAT-VSTHQGVsvAALDAALFDWLKQTKLSNHVAEAaAPGTKKGARLLSSVQALRKLLST--MKEASVVCENLDE-DNDVSITLTRTEFTSATESVL----FALRSLLENCKNKcQCPIDAVEVLGGGGRVTLFRSVIAEVFDvPEDALGAKlDDASIAHGAALIALSLAQKN 375
                 8***********99776...69**************************************9.....79986555....33333445778888999988887.4565777778888888888854.....666.588999*****************************999999999***99999999889999*****************9762224566666.456666522689********988777776665155788999***************..7888999999999.99***********99987765....56777777777775668*************************85555555515667********98887753 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.033
                 EEE-TT--..--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----....HHHHHHHHHHHHHCH CS
  PF00012.15 496 itieaseg..lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeeleged....keeieakleelekvv 593
                 it ++ ++  ++e  ++ ++  ++e++e+d+  +    ++n+le+l+ +l++  e +    s+++ +++++e++++l e+ e  d     +++ +k+ +le+ +
  MMETSP0890-20130614|5501_1 385 ITDKSPSSfsVDETRVKALIALEDEMSERDNLMALVKGERNRLESLILELRRPEELS----SHSQLMNALDEHEDWLWENKEIADpkdfCQRLVEKRTKLEEFA 484
                 333333443467778999*****************************9998753322....3333356788888888777654443344455555555555554 PP

  == domain 3    score: -5.8 bits;  conditional E-value: 7.1
                 T----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHH CS
  PF00012.15 501 seglsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeelegedkeeieakleel 589
                 ++  +e eie    +ae+++++++  + + e k                                                i+a++ +l
  MMETSP0890-20130614|5501_1 498 ERAKTEAEIEASAAQAEKHQDDEDDDE-RREDK------------------------------------------------INADTRKL 537
                 222333333333333333322211111.11122................................................22222211 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.2   1.2e-08   1.3e-05       8      68 ..     551     627 ..     547     627 .. 0.75
   2 !   43.1   0.1   2.1e-14   2.2e-11      11      69 .]     605     662 ..     601     662 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.2e-08
   PF13414.1   8 elGnalfkegdydeAieayekAl....eldpnnae.............lyynlAlaylklgkdyeeAledyekAleld 68 
                  ++ +lfk g+   A + y+ Al    +ldp++ +             l  nl+l++ kl+ + e+ l+++e Al+ld
  MMETSP0890-20130614|5501_1 551 DEATELFKDGNILHAAKRYKDALghaiKLDPDSIQpdeaqqllkmkidLNVNLSLCWTKLN-NLEQSLRACEAALKLD 627
                 4455555555555555555555533338998875555788********************8.79************98 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 2.1e-14
   PF13414.1  11 nalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +  k+++++++++a+e Al+ld +++++++++A +y++   ++eeA++d+++Al+l P
  MMETSP0890-20130614|5501_1 605 LCWTKLNNLEQSLRACEAALKLDDSHPKALFRRAFVYEQTK-RFEEARTDLKRALSLVP 662
                 566789*********************************96.8*************977 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.3   5.5e+03      15      25 ..     548     558 ..     546     560 .. 0.85
   2 ?    1.8   0.2      0.24   2.5e+02       8      23 ..     560     575 ..     553     583 .. 0.76
   3 !   13.7   0.0   3.8e-05      0.04       4      33 ..     600     629 ..     597     630 .. 0.90
   4 !   27.5   0.0   1.4e-09   1.5e-06       1      34 []     631     664 ..     631     664 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 5.3
                 T-HHHHHHHHH CS
  PF07719.12  15 gdyeeAleafe 25 
                 ++ +eA e+f+
  MMETSP0890-20130614|5501_1 548 KNKDEATELFK 558
                 7999**99996 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.24
                 HHHHHHTT-HHHHHHH CS
  PF07719.12   8 GlayyklgdyeeAlea 23 
                 G+++ ++++y++Al +
  MMETSP0890-20130614|5501_1 560 GNILHAAKRYKDALGH 575
                 7778888888888754 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 + nl l++ kl+++e+ l+a+e Al+ld  
  MMETSP0890-20130614|5501_1 600 NVNLSLCWTKLNNLEQSLRACEAALKLDDS 629
                 6799***********************975 PP

  == domain 4    score: 27.5 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++al++++ +y++ +++eeA+ ++++Al+l P++
  MMETSP0890-20130614|5501_1 631 PKALFRRAFVYEQTKRFEEARTDLKRALSLVPED 664
                 689****************************986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.074        78       8      21 ..     560     573 ..     553     583 .. 0.82
   2 !   11.3   0.0   0.00017      0.18       9      33 ..     605     629 ..     602     630 .. 0.90
   3 !   22.6   0.0   4.7e-08     5e-05       1      33 [.     631     663 ..     631     664 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.074
                 HHHHHHTT-HHHHH CS
  PF00515.23   8 GnaylklgkydeAl 21 
                 Gn+++  ++y++Al
  MMETSP0890-20130614|5501_1 560 GNILHAAKRYKDAL 573
                 99999999999998 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00017
                 HHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   9 naylklgkydeAleyyekALelnPn 33 
                 ++  kl+++++ l ++e AL+l+ +
  MMETSP0890-20130614|5501_1 605 LCWTKLNNLEQSLRACEAALKLDDS 629
                 5889******************965 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 4.7e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                 +kal++++ +y + ++++eA  + ++AL+l P+
  MMETSP0890-20130614|5501_1 631 PKALFRRAFVYEQTKRFEEARTDLKRALSLVPE 663
                 68****************************987 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.2   2.3e+03      28      64 ..     552     585 ..     535     595 .. 0.49
   2 !   30.7   0.4   1.8e-10   1.9e-07      11      72 ..     613     674 ..     609     675 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.2
   PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                  + e+   G +l+   ++  A   L ++++l+pd  +
  MMETSP0890-20130614|5501_1 552 EATELFKDGNILHAAKRYKDA---LGHAIKLDPDSIQ 585
                 555555555555555555444...4556666664433 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 1.8e-10
   PF13371.1  11 ferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaeliraql 72 
                  e+ L+++e  l l+  +p  +  r+++++q+ ++++A++dL ++l l p++ +  ++ +++
  MMETSP0890-20130614|5501_1 613 LEQSLRACEAALKLDDSHPKALFRRAFVYEQTKRFEEARTDLKRALSLVPEDKALNQLLKRV 674
                 57789************************************************999998775 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.42   4.4e+02       3      28 ..     552     581 ..     550     593 .. 0.70
   2 !   26.5   0.2   6.1e-09   6.4e-06      10      63 ..     610     663 ..     609     665 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.42
   PF13432.1   3 lArallraGdydeAlaaleaalala....P 28 
                 +A +l+++G+   A++ +++al  a    P
  MMETSP0890-20130614|5501_1 552 EATELFKDGNILHAAKRYKDALGHAikldP 581
                 678888888888888888888877664442 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 6.1e-09
   PF13432.1  10 aGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                 ++++++ l+a eaal+l+  ++ al+++a ++ + +r++eA+  l++al+l P 
  MMETSP0890-20130614|5501_1 610 LNNLEQSLRACEAALKLDDSHPKALFRRAFVYEQTKRFEEARTDLKRALSLVPE 663
                 689***************99*************************999999886 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.5   5.8e+03      15      25 ..     548     558 ..     547     559 .. 0.84
   2 ?   -2.8   0.0       6.1   6.5e+03      23      33 ..     572     582 ..     570     583 .. 0.81
   3 !    8.3   0.0    0.0018       1.9       4      32 ..     600     628 ..     597     630 .. 0.91
   4 !   14.3   0.0   2.2e-05     0.023       2      32 ..     632     662 ..     631     665 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5.5
                 T-HHHHHHHHH CS
   PF13181.1  15 GdydkAkeyle 25 
                 +++d+A e ++
  MMETSP0890-20130614|5501_1 548 KNKDEATELFK 558
                 89****99876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.1
                 HHH---HHHH. CS
   PF13181.1  23 ylekalelkpr 33 
                 +l  a++l+p+
  MMETSP0890-20130614|5501_1 572 ALGHAIKLDPD 582
                 6789*****96 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0018
                 TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                   nl+++  +l++ ++++ + e al+l+ 
  MMETSP0890-20130614|5501_1 600 NVNLSLCWTKLNNLEQSLRACEAALKLDD 628
                 679************************85 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 2.2e-05
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ka+++++ +Y+q++++++A   l++al+l p
  MMETSP0890-20130614|5501_1 632 KALFRRAFVYEQTKRFEEARTDLKRALSLVP 662
                 799************************9976 PP

>> PF02782.11  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.3e-08   1.4e-05      49     194 ..     229     369 ..     193     372 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.3e-08
  PF02782.11  49 lvkwlrdnlglreeirdaeeveeslaelaaaaavedaggvvfvpafsGlrapywdpdargtitglsagtt.....kahiarAalegvalqlrailealekdsgaplsrlavdGGgsrndllmqllAdilgvpVerprt...aeatalGaAllAa 194
                 l++wl ++ +          +++ +ae aa  ++  a  +  v a+  l ++  +++a+ +  +l+++ +        ++ +a e+v ++lr  le  +++++ p++ + v GGg r +l++ ++A++++vp   +     +++ a+GaAl+A+
  MMETSP0890-20130614|5501_1 229 LFDWLKQT-K----------LSNHVAEAAAPGTKKGARLLSSVQALRKLLST--MKEASVVCENLDEDNDvsitlTRTEFTSATESVLFALRSLLENCKNKCQCPIDAVEVLGGGGRVTLFRSVIAEVFDVPEDALGAkldDASIAHGAALIAL 369
                 34477777.2..........24666777777778888888888888888875..566666677777777777777777888999**********************************************7744333222389999****9996 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         3   3.2e+03      16      34 ..     568     583 ..     554     595 .. 0.55
   2 ?    5.6   0.1     0.026        28      13      42 ..     609     638 ..     602     639 .. 0.89
   3 !   17.0   0.1   5.4e-06    0.0057       1      41 [.     631     671 ..     631     674 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 3
   PF13428.1  16 dpdeAiallrralalaPdd 34 
                 ++++A+     a++l+Pd+
  MMETSP0890-20130614|5501_1 568 RYKDALG---HAIKLDPDS 583
                 4444443...334446654 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.026
   PF13428.1  13 alGdpdeAiallrralalaPddaealllLa 42 
                  l+++++ ++++++al+l+ +++ al++ a
  MMETSP0890-20130614|5501_1 609 KLNNLEQSLRACEAALKLDDSHPKALFRRA 638
                 5899*******************9999887 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 5.4e-06
   PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaealllL 41 
                 p+al ++a ++++  +++eA+  l+ral+l P+d ++  lL
  MMETSP0890-20130614|5501_1 631 PKALFRRAFVYEQTKRFEEARTDLKRALSLVPEDKALNQLL 671
                 6799*****************************99887766 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.042        44      50      76 ..     601     627 ..     551     629 .. 0.79
   2 !   17.7   0.2   2.1e-06    0.0022      10      76 ..     602     661 ..     596     663 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.042
   PF13424.1  50 nnlanlylalgdydeAleylekAleia 76 
                  nl+ ++ +l++++++l+  e Al+++
  MMETSP0890-20130614|5501_1 601 VNLSLCWTKLNNLEQSLRACEAALKLD 627
                 688899999999999999999999886 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.1e-06
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 nl l+  +l +++++l  +e al+l     d hp   +al+  a +y++ ++++eA+  l++Al + 
  MMETSP0890-20130614|5501_1 602 NLSLCWTKLNNLEQSLRACEAALKLD----DSHP---KALFRRAFVYEQTKRFEEARTDLKRALSLV 661
                 7778877999*************883....6665...68*************************986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0021       2.2       3      34 ..     601     630 ..     599     632 .. 0.82
   2 ?    4.5   0.0     0.029        31       2      32 ..     634     662 ..     633     666 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0021
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdpld 34 
                 +nL  ++++l++ e+ ++++e+  al+ d+++
  MMETSP0890-20130614|5501_1 601 VNLSLCWTKLNNLEQSLRACEA--ALKLDDSH 630
                 588889****************..66666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.029
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdp 32 
                 l++ a +y++  ++e+A + ++raL l   p
  MMETSP0890-20130614|5501_1 634 LFRRAFVYEQTKRFEEARTDLKRALSL--VP 662
                 6677779****************5544..43 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       8.5   8.9e+03      14      24 ..     548     558 ..     543     559 .. 0.79
   2 ?   -2.6   0.0       8.7   9.2e+03       8      28 ..     605     625 ..     602     628 .. 0.75
   3 ?   11.4   0.0    0.0003      0.31       2      31 ..     633     662 ..     632     664 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 8.5
                 HHHHHHHHHHH CS
   PF13174.1  14 gdtdeAleale 24 
                 +++deA e+++
  MMETSP0890-20130614|5501_1 548 KNKDEATELFK 558
                 699***99997 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 8.7
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   8 lsyyklgdtdeAlealerlik 28 
                 l+  kl++ +++l+a e  +k
  MMETSP0890-20130614|5501_1 605 LCWTKLNNLEQSLRACEAALK 625
                 677787899999998887765 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlikeyP 31 
                 Al+++a +y+++++++eA++ l+r ++  P
  MMETSP0890-20130614|5501_1 633 ALFRRAFVYEQTKRFEEARTDLKRALSLVP 662
                 9**********99**********9998766 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.5   4.7e+03      20      33 ..     560     573 ..     560     574 .. 0.91
   2 ?   -1.5   0.0       3.4   3.6e+03       5      12 ..     576     583 ..     575     593 .. 0.86
   3 ?   -2.0   0.0         5   5.2e+03      15      32 ..     599     616 ..     596     618 .. 0.82
   4 ?   11.4   0.0   0.00025      0.26       1      33 [.     619     651 ..     619     652 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 4.5
   PF13431.1  20 AelllnnGdleeAe 33 
                 +++l++++++++A+
  MMETSP0890-20130614|5501_1 560 GNILHAAKRYKDAL 573
                 799********996 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3.4
   PF13431.1   5 aleldPnn 12 
                 a++ldP++
  MMETSP0890-20130614|5501_1 576 AIKLDPDS 583
                 899***97 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5
   PF13431.1  15 aynnLAelllnnGdleeA 32 
                 +  nL +++ ++++le++
  MMETSP0890-20130614|5501_1 599 LNVNLSLCWTKLNNLEQS 616
                 557999999999999987 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 0.00025
   PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                 ++e al+ld  ++ a++++A ++   +++eeA+
  MMETSP0890-20130614|5501_1 619 ACEAALKLDDSHPKALFRRAFVYEQTKRFEEAR 651
                 589****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       951  (0.0695582); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.19u 0.35s 00:00:01.54 Elapsed: 00:00:01.00
# Mc/sec: 1665.47
//
Query:       MMETSP0890-20130614|5509_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-11   42.3   0.0    1.9e-05   24.3   0.0    2.2  2  PF00334.14 Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> PF00334.14  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.8e-07    0.0079       2      54 ..       8      64 ..       7      72 .. 0.77
   2 !   24.3   0.0   1.4e-09   1.9e-05      55     130 ..     151     243 ..     144     247 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.8e-07
                -EEEEE-HHHHCTT-HHHHHHHHHH---EEEEEEEE--....-HHHHHHHTGGGTTS CS
  PF00334.14  2 rtlvliKPdavkrgligeiisrleekglkivalkmlql....teeqaeehYaehkgk 54
                +++v +KP+av ++ i+ + +++ ++gl+i++   +      +++++ +hY   ++k
  MMETSP0890-20130614|5509_1  8 KAFVFVKPHAVTEKTIELVKTEMDKAGLTITEEGSISSetidSKMLVDQHYYAIASK 64
                789***************************986544321111567777788666555 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1.4e-09
                 TTHHHHHHHHT-..--EEEEEEE---CHHHHH....HH----STTCS------------G...........GG-SEEE--SHHHHHHHHHHHS CS
  PF00334.14  55 pffeelvefits..gpvvalvlegenavekvr....ellGatnpaeaapgtiRgdfavsl...........geNlvHgSdseesaereiklfF 130
                  f+ ++ e  t+  g +  +v+e +  v  ++    ellG+t+pa a p++iRg+   ++           g+N vH+S+s+ +a  e   ++
  MMETSP0890-20130614|5509_1 151 AFYASMRERFTKpgGSIYYFVVEWDAEVLPWSkfrgELLGPTDPASAPPNSIRGQIFSKWkdlglsaepntGDNGVHASASPFEALAERMNWL 243
                 577777777777767888888888877777761113467**************98777776888888888777*********99998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.70
# Mc/sec: 1057.82
//
Query:       MMETSP0890-20130614|5514_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00012   19.9  22.9    0.00013   19.9  15.9    1.0  1  PF04147.7  Nop14-like family
  ------ inclusion threshold ------
      0.012   14.0  21.7      0.012   14.0  15.0    1.1  1  PF03344.10 Daxx Family
      0.012   14.5  14.9      0.013   14.4  10.3    1.2  1  PF09073.5  BUD22
      0.033   14.1  11.9      0.039   13.9   8.3    1.1  1  PF09805.4  Nucleolar protein 12 (25kDa)
       0.04   13.1  26.0      0.042   13.0  18.0    1.0  1  PF05285.7  SDA1
       0.16   11.9  10.5       0.21   11.5   7.3    1.3  1  PF11081.3  Protein of unknown function (DUF2890)
       0.53    9.6   5.6       0.58    9.4   3.9    1.1  1  PF12685.2  SpoIIIAH-like protein
       0.82    8.9  73.1    1.4e+04  -36.7  50.7    3.9  0  PF04886.7  PT repeat
        1.2    7.0  15.7        1.2    6.9  10.9    1.0  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
        1.3    7.4   3.3        1.2    7.5   2.3    1.0  1  PF04499.10 SIT4 phosphatase-associated protein
        7.4    5.3  11.0        8.3    5.1   7.6    1.1  1  PF10846.3  Protein of unknown function (DUF2722)


Domain annotation for each model (and alignments):
>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  15.9     1e-07   0.00013     325     384 ..       5      61 ..       1     120 [. 0.42

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1e-07
   PF04147.7 325 denfglgsaeeeeeeee.eegvededeeeddddeeeeeedvdedeeeedeedeesddeeee 384
                 d+ + +  +e++e+++e +++ +dede+eddd+     ed+dede+e++++d+e++de++ 
  MMETSP0890-20130614|5514_1   5 DKYYYNYGDEDDEDDDEdKDEDDDEDEDEDDDEY----EDEDEDEDEDEDKDDEDEDEDDG 61 
                 3333333333333333302222222222222222....23333222222222222222222 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  15.0   9.8e-06     0.012     446     494 ..      13      61 ..       3     111 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.8e-06
  PF03344.10 446 ekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegeg 494
                 +++++++d++k+e+d+++e+e+++e e+e+e++d++e++d e   e++g
  MMETSP0890-20130614|5514_1  13 DEDDEDDDEDKDEDDDEDEDEDDDEYEDEDEDEDEDEDKDDEDEDEDDG 61 
                 4445555555555555555555555555555555555555555555554 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  10.3     1e-05     0.013     181     259 ..      14      58 ..       3     134 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1e-05
   PF09073.5 181 ssddeeseeddsdsdeeeesdsedlsqydallvsssdeesgeeqdesddeeesesesesdeedeedsdsrsvsdseese 259
                 ++d++++e++d+d+de+e++d++   +y+++                               de+ ++++ ++d++e e
  MMETSP0890-20130614|5514_1  14 EDDEDDDEDKDEDDDEDEDEDDD---EYEDE-------------------------------DEDEDEDEDKDDEDEDE 58 
                 11111111111222222211111...11111...............................11111111111111111 PP

>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   8.3   3.1e-05     0.039      81     123 ..      17      59 ..       7     103 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.1e-05
   PF09805.4  81 eeeddeeeeeeekeeeeeedewegfnedeeeeeteeeedsded 123
                 e++d++++e+++++e+e++de e  +ede+e+e++ +ed+ded
  MMETSP0890-20130614|5514_1  17 EDDDEDKDEDDDEDEDEDDDEYEDEDEDEDEDEDKDDEDEDED 59 
                 2222223333333333333344444444444444444444444 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  18.0   3.4e-05     0.042      89     139 ..      11      60 ..       2     103 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.4e-05
   PF05285.7  89 egleseedddeeWdvdsdeededeDeegewvdvesdeee.essDsedeeees 139
                  g+e++eddde+ d+d+de+++++  ++e +d+++de+e e++D+ede+e++
  MMETSP0890-20130614|5514_1  11 YGDEDDEDDDEDKDEDDDEDEDED--DDEYEDEDEDEDEdEDKDDEDEDEDD 60 
                 566777788877655444444333..45555555553332666666665543 PP

>> PF11081.3  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.3   0.00017      0.21      18      90 ..      17      99 ..       8     138 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00017
   PF11081.3 18 edeeEdwdsqaeevs.eeeeeledw.edSldeedeeaeeveeetaak..........skapssssksssqetksapprpaarrps 90
                ed +Ed d++ +e   e+++e ed+ ed  ++ed+++e+++e +             ++ap+ + +++ +++++ p + + ++p 
  MMETSP0890-20130614|5514_1 17 EDDDEDKDEDDDEDEdEDDDEYEDEdEDEDEDEDKDDEDEDEDD--GdyyyffyygdEPAPTVNPTAEPRRPTKCPTSDPSQHPT 99
                56666666555444446666666653333333333444444444..245889999999999999999999999999999987665 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.9   0.00047      0.58      24      67 ..      14      57 ..       6     106 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00047
   PF12685.2 24 nkdkdnkasvaaesseassaeeseaenkaasaedqae.eeaased 67
                ++d ++++++++e  +++++e+ ++ ++++++ed++e +++++ed
  MMETSP0890-20130614|5514_1 14 EDD-EDDDEDKDEDDDEDEDEDDDEYEDEDEDEDEDEdKDDEDED 57
                222.22222222222222222222222222222222111111111 PP

>> PF04886.7  PT repeat
   [No individual domains that satisfy reporting thresholds (although complete target did)]

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.9     0.001       1.2     223     267 ..      16      60 ..      10     105 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.001
   PF05327.6 223 ddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeedee 267
                 d++dde+++e ++e+e+e+++e +d d+d++e+e++++ede++++
  MMETSP0890-20130614|5514_1  16 DEDDDEDKDEDDDEDEDEDDDEYEDEDEDEDEDEDKDDEDEDEDD 60 
                 444555555555555566666666666666666666666554433 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.3   0.00098       1.2     270     319 ..      17      55 ..       3     124 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00098
  PF04499.10 270 eeeaedtsadaeqdsaedkreleasnasedseeededdeeseeseesees 319
                 e++ ed+            ++ +++++++d+e eded++e+e++++++e+
  MMETSP0890-20130614|5514_1  17 EDDDEDKD-----------EDDDEDEDEDDDEYEDEDEDEDEDEDKDDED 55 
                 11111111...........1111111111111111111111111111111 PP

>> PF10846.3  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.6    0.0067       8.3     360     394 ..      19      51 ..       7     107 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0067
   PF10846.3 360 ddddekerkkeeeedkekdsikddddkdlsedssi 394
                 dd+d++e++ e+e+  e+d++ +d+d+d +ed+ +
  MMETSP0890-20130614|5514_1  19 DDEDKDEDDDEDED--EDDDEYEDEDEDEDEDEDK 51 
                 22221111111111..1111222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                       193  (0.0141164); expected 13.7 (0.001)
Passed Fwd filter:                        84  (0.00614394); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.08u 0.45s 00:00:01.53 Elapsed: 00:00:01.23
# Mc/sec: 307.82
//
Query:       MMETSP0890-20130614|5515_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   56.2   0.0    4.7e-15   55.5   0.0    1.3  1  PF13474.1 SnoaL-like domain
      4e-07   30.2   0.1    1.1e-06   28.8   0.1    1.8  1  PF12680.2 SnoaL-like domain
      0.003   17.4   0.0     0.0064   16.3   0.0    1.5  1  PF07858.7 Limonene-1,2-epoxide hydrolase catalytic domain


Domain annotation for each model (and alignments):
>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     1e-18   4.7e-15       3     116 ..      96     206 ..      94     209 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1e-18
   PF13474.1   3 alldafyeaaeegDldallalfa...ddvvfigtgadelatgreevraylkpdfaktepisfeledvrv.tvsgdvawvteeldlqakadgseaegqvrgtgvlrktdgg.Wkivhyhl 116
                 ++++afy+a+++gD++a+ + +    ++v+ +++g ++l+ gr++v++++++ +a   p s+++++ rv + ++d+aw+++ ++l+    g+++   + +t+++++  +g W+iv +h+
  MMETSP0890-20130614|5515_1  96 SANRAFYAAFRSGDFEAMANALHpddEQVSVVHPGIPPLY-GRKAVLQSWRAVLA--SPPSVFPSEARVvQIHDDIAWLHCFESLD----GTDG-VKLAATNIFKRDSEGiWRIVLHHA 206
                 689********************99999********9997.9**********998..455555555555499***********995....4444.5589*****8876644****9996 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   2.4e-10   1.1e-06       2      64 ..      99     168 ..      98     204 .. 0.66

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.4e-10
                 HHHHHHHHTT-HHHHHHTEEEEEEEE...CT.S--E---HHHHHHHTTHHH...CEECEEEEEEEEESST CS
   PF12680.2   2 raflaalnagdldalaallapdvvwe...dp.fgelrGrealraffralla...afpdlrfevedviadg 64 
                 raf+aa+ +gd++a+a  l+pd ++    +p  ++l Gr a+ + +ra+la   +++  +++v+++ +d 
  MMETSP0890-20130614|5515_1  99 RAFYAAFRSGDFEAMANALHPDDEQVsvvHPgIPPLYGRKAVLQSWRAVLAsppSVFPSEARVVQIHDDI 168
                 89******************996654344897777***************95553333344444443333 PP

>> PF07858.7  Limonene-1,2-epoxide hydrolase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0064       8      71 ..      99     167 ..      95     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHGGG--.HHHHGGGB-SS--B..EETTS--B---HHHHHHH---...TEEEEEEEE..EE---- CS
   PF07858.7   8 eaFlaalqeddydaavrelftedtvy..envglstitGrdeaiallerl...vasiaavevkilriaad 71 
                 +aF aa+++ d++a  ++l ++d+      +g+++ +Gr+++ + ++ +     s+   e ++++i  d
  MMETSP0890-20130614|5515_1  99 RAFYAAFRSGDFEAMANALHPDDEQVsvVHPGIPPLYGRKAVLQSWRAVlasPPSVFPSEARVVQIHDD 167
                 79*****************999886511678***************99855334555667777777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 712.16
//
Query:       MMETSP0890-20130614|5516_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 546.37
//
Query:       MMETSP0890-20130614|5523_1  [L=701]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-72  239.4   0.0    1.3e-45  154.7   0.0    2.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.9e-12   46.7   6.8    4.6e-06   26.9   0.1    3.4  2  PF13191.1  AAA ATPase domain
    1.1e-11   44.8   0.1     0.0021   18.0   0.0    4.4  3  PF13401.1  AAA domain
    6.9e-11   42.0   0.0    0.00016   21.4   0.0    2.3  2  PF13173.1  AAA domain
      8e-10   38.3   0.1    6.2e-05   22.3   0.0    2.3  2  PF01695.12 IstB-like ATP binding protein
    5.6e-09   36.7   0.0     0.0054   17.3   0.0    2.8  2  PF13207.1  AAA domain
    2.8e-08   33.0   0.0    0.00022   20.2   0.0    3.3  3  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    3.1e-08   33.4   0.1     0.0032   17.2   0.0    3.5  3  PF13671.1  AAA domain
    3.5e-08   32.6   0.2     0.0031   16.5   0.0    2.9  3  PF06414.7  Zeta toxin
      6e-08   32.3   0.0     0.0022   17.5   0.0    3.5  2  PF07728.9  AAA domain (dynein-related subfamily)
    1.8e-07   30.7   0.0      0.074   12.5   0.0    3.6  3  PF05729.7  NACHT domain
    1.9e-07   30.5   0.0     0.0039   16.5   0.0    2.6  2  PF00158.21 Sigma-54 interaction domain
    2.4e-07   29.7   0.1     0.0045   15.6   0.0    2.2  2  PF06068.8  TIP49 C-terminus
    4.1e-07   29.2   0.2      0.031   13.3   0.0    2.7  2  PF01078.16 Magnesium chelatase, subunit ChlI
    7.9e-07   29.0   0.0     0.0012   18.7   0.0    2.4  2  PF07724.9  AAA domain (Cdc48 subfamily)
    1.7e-06   28.0   0.0      0.037   14.0   0.0    2.5  2  PF00910.17 RNA helicase
    1.9e-06   27.4   3.7       0.03   13.9   0.2    3.8  2  PF13245.1  Part of AAA domain
      1e-05   25.7   0.0       0.19   11.9   0.0    2.7  2  PF13238.1  AAA domain
    1.6e-05   23.8   0.0      0.045   12.5   0.0    2.2  2  PF00931.17 NB-ARC domain
    1.9e-05   23.8   0.0      0.051   12.6   0.0    2.4  2  PF02562.11 PhoH-like protein
    2.6e-05   23.3   0.0       0.11   11.4   0.0    2.6  2  PF06745.8  KaiC
    3.3e-05   23.8   0.3       0.13   12.0   0.0    3.0  2  PF13521.1  AAA domain
    5.2e-05   22.9   0.0       0.45   10.0   0.0    2.9  2  PF01637.13 Archaeal ATPase
    0.00017   20.9   2.4        0.2   10.9   0.1    3.9  4  PF13481.1  AAA domain
     0.0003   20.3   0.0       0.16   11.3   0.0    2.3  2  PF13479.1  AAA domain
     0.0021   17.4   0.0        0.3   10.4   0.0    2.3  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0022   16.8   0.0        1.4    7.6   0.0    2.4  2  PF05673.8  Protein of unknown function (DUF815)
     0.0023   17.4   0.0        1.9    7.9   0.0    2.4  2  PF01443.13 Viral (Superfamily 1) RNA helicase
     0.0059   16.0   0.0        4.1    6.7   0.0    2.6  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
     0.0072   15.8   0.0       0.58    9.6   0.0    2.7  2  PF13086.1  AAA domain
     0.0089   14.8   0.0       0.13   10.9   0.0    2.2  2  PF00437.15 Type II/IV secretion system protein
     0.0099   16.1   0.0        0.7   10.0   0.0    2.3  2  PF13476.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.3   0.0        3.1    7.2   0.0    2.4  2  PF00308.13 Bacterial dnaA  protein
      0.011   15.2   0.0        3.7    7.0   0.0    2.3  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.012   15.3   0.0       0.48   10.1   0.0    2.3  2  PF04851.10 Type III restriction enzyme, res subunit
      0.012   15.1   0.0       0.91    9.0   0.0    3.0  3  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.013   14.5   0.1        9.3    5.2   0.0    3.4  3  PF01745.11 Isopentenyl transferase
      0.021   13.5   0.0        3.2    6.3   0.0    2.1  2  PF03215.10 Rad17 cell cycle checkpoint protein
      0.022   13.6   0.0        3.1    6.5   0.0    2.4  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.027   13.9   0.0       0.33   10.4   0.0    2.3  2  PF07931.7  Chloramphenicol phosphotransferase-like protein
      0.034   13.2   0.0        6.1    5.8   0.0    2.6  2  PF09439.5  Signal recognition particle receptor beta subunit
      0.036   12.9   0.0        9.4    4.9   0.0    3.2  4  PF10236.4  Mitochondrial ribosomal death-associated protein 3
      0.044   12.3   0.0        2.5    6.5   0.0    2.2  2  PF02456.10 Adenovirus IVa2 protein
      0.062   12.6   0.0        1.3    8.3   0.0    2.6  2  PF00270.24 DEAD/DEAH box helicase
      0.091   11.5   0.0        2.5    6.7   0.0    2.3  2  PF01057.12 Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   8.5e-26   2.6e-23       1     130 [.     155     290 ..     155     292 .. 0.91
   2 !  154.7   0.0   4.2e-48   1.3e-45       1     131 [.     430     571 ..     430     572 .. 0.97

  Alignments for each domain:
  == domain 1    score: 82.5 bits;  conditional E-value: 8.5e-26
                 EEEE-------HHHHHHHHHHC....THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
  PF00004.24   1 vllyGppGtGKTllakavakel....gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 vl++Gp G+GKTlla+av +e+    +  ++e++g+el     g++ek ++ +f+ + ++  p  lfiD++dal++++     +++ + +++r +++L   ld    + +++ +igat + d+ld+ l+r gRf+r+i +
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREAcvdeKCAYFEVNGAELA--CCGDAEKVTQRVFQLVVAST-PALLFIDDLDALFGASsgsssNRALEISGRRFASTLCGCLDAIGPE-QRISIIGATASADSLDSRLRRfGRFEREIAL 290
                 79*******************97777799**********..***************98886.****************77654445566899*************996.66*************************9976 PP

  == domain 2    score: 154.7 bits;  conditional E-value: 4.2e-48
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH............SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr............sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vllyGppG+GKTlla+ava+e++++f++i+g+ell+kyvgese+ +r+lf +a+++a p+i+f+DEidal+++r            s++++ +++rvvnqLlteldg++++ ++v v++atnrp+ ldpal r gR+d+ ++++
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANFISIKGPELLDKYVGESERAVRNLFARARSSA-PCIVFFDEIDALCPRRagsaisgasataSDGSNAVTDRVVNQLLTELDGLESR-GQVYVVAATNRPELLDPALTRpGRIDKLLFVP 571
                 79******************************************************9.**************************99999*********************7.66*************************99987 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.5e-08   4.6e-06      18      87 ..     146     213 ..     139     290 .. 0.61
   2 !   22.3   0.1   4.1e-07   0.00012      24     100 ..     427     517 ..     402     585 .. 0.63

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.5e-08
   PF13191.1  18 rvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn...lpysaiiqalrellrqlltela 87 
                 +    +p ++l++Gp G+GK+ L+r++ ++++ +      +k+  ++ n   l+    ++++ + + ql  +++
  MMETSP0890-20130614|5523_1 146 ELGIQGPrAVLIHGPTGCGKTLLARAVSREACVD------EKCAYFEVNgaeLACCGDAEKVTQRVFQLVVAST 213
                 44555566******************77777743......3444444443333333333334444444444444 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 4.1e-07
   PF13191.1  24 p.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn................lpysaiiqa......lrellrqlltelaaelggwreallaa 100
                 p  +l++Gp+G+GK+ L+r++a +   + + f++ k  +ll                   +      +      ++e+ + + ++ +++++g+ + +++ 
  MMETSP0890-20130614|5523_1 427 PaGVLLYGPPGCGKTLLARAVASE---SSANFISIKGPELLDKyvgeseravrnlfaraRS------SapcivfFDEIDALCPRRAGSAISGASATASDG 517
                 257*****************5533...3333333333333333444555544433333311......123333355555555555555555555555555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-05     0.003       3      29 ..     151     177 ..     149     191 .. 0.84
   2 ?    3.3   0.0      0.24        72      67     105 ..     195     239 ..     187     270 .. 0.74
   3 !   18.0   0.0     7e-06    0.0021       7      44 ..     430     459 ..     427     534 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1e-05
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqld 29 
                 + + ++++G++G+GKT+l+r + r++ 
  MMETSP0890-20130614|5523_1 151 GPRAVLIHGPTGCGKTLLARAVSREAC 177
                 67899****************999875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.24
   PF13401.1  67 kgrltteellealqealrrrrtrlliiDEaqrL........seeale 105
                  g  ++e++++++ + + +    ll iD+++ L        s +ale
  MMETSP0890-20130614|5523_1 195 CG--DAEKVTQRVFQLVVASTPALLFIDDLDALfgassgssSNRALE 239
                 55..7788888888888888888*********888875543355555 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 7e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfve 44 
                 ++++G++G+GKT+l+r +a++         +a+++++ 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASES--------SANFISIK 459
                 689****************987........44444443 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.6e-06    0.0014       3      73 ..     153     225 ..     151     284 .. 0.78
   2 !   21.4   0.0   5.4e-07   0.00016       5      74 ..     430     515 ..     427     574 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.6e-06
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe.llelflek.lkekkkylflDEiqev 73 
                 ++++i Gp ++GKt l++ + +e   +e++ y++++ +el    d e + + ++++   +   +lf+D    +
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREACVDEKCAYFEVNGAELACCGDAEkVTQRVFQLvVASTPALLFIDDLDAL 225
                 789*****************99999999999999999999887776666777777744557889****88766 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 5.4e-07
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev................p 74 
                 ++++Gp ++GKt l++ +a+e     +++ i+  +  ++   ++e  + +lf +  ++   ++f+DEi  +                 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESS--ANFISIKGPELLDKYVGESEraVRNLFARARSSAPCIVFFDEIDALcprragsaisgasataS 515
                 689****************9988..8899998887666555555455667777765557889******98766555555544444440 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     2e-07   6.2e-05      48     117 ..     153     222 ..     137     236 .. 0.77
   2 !   13.4   0.0   0.00011     0.033      49      71 ..     429     451 ..     426     459 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2e-07
  PF01695.12  48 enlvllGpsGvGKthlAialgveavraglsvlfvrledLveeLkrakgdgrleralkrlakvdllilDdl 117
                 + +++ Gp+G GKt lA a+  ea+ +++ ++f      +++   a++  +   +l       ll +Ddl
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREACVDEKCAYFEVNGAELACCGDAEKVTQRVFQLVVASTPALLFIDDL 222
                 6799**********************99998886554444555555444444445555566678888886 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 0.00011
  PF01695.12  49 nlvllGpsGvGKthlAialgvea 71 
                  ++l Gp+G GKt lA a++ e 
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARAVASES 451
                 689***************99875 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.9e-05     0.012       2      32 ..     155     189 ..     154     288 .. 0.79
   2 !   17.3   0.0   1.8e-05    0.0054       2      32 ..     430     460 ..     430     504 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.9e-05
                 E--B--TT---HHHHHHHHHHS....TEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl....glpvlsldd 32 
                 ++i+Gp+G+GK+ la++++++      + +++ + 
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREAcvdeKCAYFEVNG 189
                 79*****************9975555566766665 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.8e-05
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd 32 
                 ++++GppG+GK+ la+++a +   + +s++ 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANFISIKG 460
                 789****************998888888877 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0027      0.82      53      79 ..     155     181 ..     139     225 .. 0.88
   2 ?   -1.4   0.0       2.8   8.6e+02     149     173 ..     261     284 ..     259     291 .. 0.83
   3 !   20.2   0.0   7.1e-07   0.00022      53      86 ..     430     463 ..     425     501 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0027
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelk 79 
                 vl++Gp G Gkt la+ +++e  v+ k
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREACVDEK 181
                 9******************99877655 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.8
   PF05496.7 149 kftlvgattraglltsPlrdrfgiv 173
                 +  ++gat+ a  l s lr rfg  
  MMETSP0890-20130614|5523_1 261 RISIIGATASADSLDSRLR-RFGRF 284
                 6789************998.77755 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 7.1e-07
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvl 86 
                 vllyGpPG Gkt la+ +a+e  +++ +  gP l
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANFISIKGPEL 463
                 9*************************99999976 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.67     2e+02      17      72 ..      35      96 ..      29     109 .. 0.79
   2 !   10.1   0.0    0.0016       0.5       2      22 ..     155     175 ..     154     209 .. 0.87
   3 !   17.2   0.0   1.1e-05    0.0032       2      80 ..     430     550 ..     430     557 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.67
   PF13671.1 17 erllkklg.yvrlsqdtlrkrlfg.....tdqqsktdytrvlkrlyqilnklarkalsagrs 72
                  l ++++ y r sq++lr+++++     ++  s++ + ++++r  ++++++  + +++gr+
  MMETSP0890-20130614|5523_1 35 STLTQRHQeYARKSQPALREAVREalamaRGETSEEISLNASQREAYAVARRSSSGARKGRN 96
                5555566669999****999999988887666677778888888888888888888888876 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0016
   PF13671.1   2 vllvGlpGsGKstlaerllkk 22 
                 vl++G+ G+GK+ la+++ ++
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSRE 175
                 899*************98765 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 1.1e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqskt........................................dytrvlkrlyqilnklarkalsagrsvivdatnl 80 
                 vll G+pG+GK+ la++++ +    ++ +  ++l ++  g+     +                                         +  v++r+ ++l+  +    s+g+ ++v atn+
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSanFISIKGPELLDKYVGESERAVRnlfararssapcivffdeidalcprragsaisgasatasdGSNAVTDRVVNQLLTELDGLESRGQVYVVAATNR 550
                 7899***************999955555666665555555333322223333333444444444444444444444444444444434556777777777777777777777777777775 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       4.9   1.5e+03     102     147 ..      38      83 ..      29     115 .. 0.63
   2 !   12.7   0.0   0.00015     0.046      14      40 ..     150     176 ..     138     188 .. 0.86
   3 !   16.5   0.0     1e-05    0.0031      16      53 ..     427     463 ..     424     481 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 4.9
   PF06414.7 102 tlrspdkarkiarklkkagykvevvivavpkelSelgilqRyeeel 147
                 t r++++ark + +l++a ++   ++     e   l + qR+   +
  MMETSP0890-20130614|5523_1  38 TQRHQEYARKSQPALREAVREALAMARGETSEEISLNASQREAYAV 83 
                 6678888888888888877776665544333333345566666553 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00015
   PF06414.7  14 ekpkavllgGqpGAGKtslaellleel 40 
                 + p+avl+ G++G+GKt la+++ +e+
  MMETSP0890-20130614|5523_1 150 QGPRAVLIHGPTGCGKTLLARAVSREA 176
                 669*******************99986 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1e-05
   PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                 p  vll G+pG+GKt la+++  e  + n++ i++ el
  MMETSP0890-20130614|5523_1 427 PAGVLLYGPPGCGKTLLARAVASES-SANFISIKGPEL 463
                 6779********************9.*******99887 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0013      0.39       2      23 ..     155     176 ..     154     191 .. 0.79
   2 !   17.5   0.0   7.3e-06    0.0022       1      86 [.     429     507 ..     429     560 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0013
                 EEEE------HHHHHHHGGGGB CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal 23 
                 vl+ Gp+G+gK+ la+ +++  
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREA 176
                 899*************998755 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 7.3e-06
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLl 86 
                 +vlL GppG+gK+ la+ +a+   +++  + +++      l+ ++    g+ ++    l   ar   ++i+++DE++ + +  ++s +
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARAVASESSANFISIKGPE------LLDKYV---GESERAVRNLFARARssAPCIVFFDEIDALCPRRAGSAI 507
                 59*****************998888888777776......666666...344444455555555566778888888755555555444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00024     0.074       1      24 [.     153     176 ..     153     187 .. 0.86
   2 ?    2.7   0.0      0.25        76      65      96 ..     198     228 ..     192     249 .. 0.69
   3 !   10.9   0.0   0.00073      0.22       3      23 ..     430     450 ..     429     454 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00024
   PF05729.7   1 rtvilqGeaGsGKTtLlqklasaw 24 
                 r v+++G+ G+GKT L++ + +++
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREA 176
                 579**************9998765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.25
   PF05729.7  65 paapvsevwivllelperlLlilDglDelvsd 96 
                  ++ +++v++++++  + +Ll++D+lD l   
  MMETSP0890-20130614|5523_1 198 AEKVTQRVFQLVVA-STPALLFIDDLDALFGA 228
                 44444455665555.56677889****98764 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00073
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 v+l G++G+GKT L++ +as+
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASE 450
                 789*************99986 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-05    0.0039      20      61 ..     150     192 ..     129     202 .. 0.77
   2 !   11.0   0.0   0.00066       0.2      20      51 ..     425     453 ..     412     469 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.3e-05
                 TS-S-EEEE-------HHHHHHHHH.TSTTTTS--EEEETTTS CS
  PF00158.21  20 ktdltvlitGesGtGKellAraihe.askrkkkpfvavncaai 61 
                 + +  vli+G +G+GK+llAra+ + a   +k  + +vn a++
  MMETSP0890-20130614|5523_1 150 QGPRAVLIHGPTGCGKTLLARAVSReACVDEKCAYFEVNGAEL 192
                 45689******************98344455567888887765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00066
                 TS-S-EEEE-------HHHHHHHHHTSTTTTS CS
  PF00158.21  20 ktdltvlitGesGtGKellAraiheaskrkkk 51 
                 + ++ vl+ G  G+GK+llAra+ ++s+   +
  MMETSP0890-20130614|5523_1 425 PLPAGVLLYGPPGCGKTLLARAVASESS---A 453
                 55788*****************988775...3 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05    0.0045      50      89 ..     152     193 ..     141     208 .. 0.84
   2 !   11.8   0.0   0.00021     0.063      52      98 ..     429     473 ..     397     483 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.5e-05
   PF06068.8  50 GravLlaGppgtGktalaiaiskelg..edvpfvalsgsevy 89 
                  ravL+ Gp+g Gkt la a+s+e    e+  +  ++g+e+ 
  MMETSP0890-20130614|5523_1 152 PRAVLIHGPTGCGKTLLARAVSREACvdEKCAYFEVNGAELA 193
                 49*********************9654499999999999985 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00021
   PF06068.8  52 avLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 +vLl Gppg Gkt la a++ e +    f++++g e+    v  +e 
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARAVASESS--ANFISIKGPELLDKYVGESER 473
                 79******************9966..78******9998887777764 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00013     0.041      14      43 ..     144     173 ..     132     210 .. 0.83
   2 !   13.3   0.0    0.0001     0.031      25      43 ..     430     448 ..     419     452 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
  PF01078.16  14 aleiaaaGgHnlllvGppGsGKtmlakrlp 43 
                   e+ + G   +l+ Gp G+GKt+la++++
  MMETSP0890-20130614|5523_1 144 YSELGIQGPRAVLIHGPTGCGKTLLARAVS 173
                 5578899999****************9876 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 0.0001
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 +ll+GppG+GKt+la++++
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVA 448
                 79*************9875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.009       2.7       6      39 ..     155     188 ..     153     216 .. 0.71
   2 !   18.7   0.0   3.8e-06    0.0012       6      91 ..     430     508 ..     427     534 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.009
                 EEEE-------HHHHHHHHHHTT-....--EEEE CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekklirad 39 
                 +l+ gptg+Gkt+la+a+++   v+++ +   ++
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREACVDEKCAYFEVN 188
                 6899***************999885554444444 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 3.8e-06
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--...-EEEETGGG------------ CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvS 91 
                 +ll gp g+Gkt+la+a+a+  ++    ++i +   ell      ++v + + a     +++ +    iv++DEid  +p+ ++g+ +S
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSA----NFISIKGPELLD-----KYVGESERAVRNLFARARSSapcIVFFDEIDALCPR-RAGSAIS 508
                 6899****************9996....***********9.....66666655555555555544588************4.4444444 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00081      0.25       1      23 [.     155     177 ..     155     193 .. 0.85
   2 !   14.0   0.0   0.00012     0.037       1      26 [.     430     455 ..     430     493 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00081
  PF00910.17   1 iwlyGpsgeGKStlakeLakall 23 
                 ++++Gp+g+GK++la+ ++++ +
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREAC 177
                 689*************9888776 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 0.00012
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 ++lyGp+g+GK++la+ +a++ + ++
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANF 455
                 689**************777665444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00033       0.1       9      34 ..     151     175 ..     141     215 .. 0.78
   2 !   13.9   0.2    0.0001      0.03      11      33 ..     429     449 ..     419     499 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00033
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaal 34 
                 g + +++ G+ G GKT +la+++++ 
  MMETSP0890-20130614|5523_1 151 GPRAVLIHGPTGCGKT-LLARAVSRE 175
                 5677999*********.777777664 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 0.0001
   PF13245.1  11 pllvvtGgPGtGKTttlaaiiaa 33 
                 ++ ++ G+PG GKT +la+++a 
  MMETSP0890-20130614|5523_1 429 GV-LLYGPPGCGKT-LLARAVAS 449
                 45.559********.66666554 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0012      0.38       1      22 [.     155     176 ..     155     201 .. 0.84
   2 !   11.9   0.0   0.00063      0.19       1      22 [.     430     451 ..     430     483 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0012
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl 22 
                 +li G++G+GKt la++ +++ 
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREA 176
                 79***************99874 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00063
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl 22 
                 +l+ G+pG+GKt la++ a++ 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASES 451
                 6899**************9874 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00015     0.045      18      46 ..     151     179 ..     141     205 .. 0.86
   2 !    9.0   0.0    0.0017      0.51      22      43 ..     430     451 ..     427     457 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00015
                 SSEEEEEE-------HHHHHHHTS-SS-- CS
  PF00931.17  18 elkvvglvGmgGvGKttlakqvykdesve 46 
                 +   v ++G  G+GKt la++v ++  v+
  MMETSP0890-20130614|5523_1 151 GPRAVLIHGPTGCGKTLLARAVSREACVD 179
                 567899****************9987665 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0017
                 EEEE-------HHHHHHHTS-S CS
  PF00931.17  22 vglvGmgGvGKttlakqvykde 43 
                 v l+G +G+GKt la++v  + 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASES 451
                 779**************98664 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00017     0.051      20      48 ..     153     181 ..     140     186 .. 0.84
   2 !    8.5   0.0    0.0031      0.95      22      42 ..     430     450 ..     427     457 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00017
  PF02562.11  20 divfaiGpaGtGKTylavalavealkkkk 48 
                   v+++Gp+G+GKT+la a++ ea+ ++k
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREACVDEK 181
                 57999*************99988877765 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0031
  PF02562.11  22 vfaiGpaGtGKTylavalave 42 
                 v++ Gp G+GKT+la a+a e
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASE 450
                 6789************99976 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00037      0.11      15      53 ..     148     184 ..     135     206 .. 0.82
   2 !    9.0   0.0     0.002      0.62      15      38 ..     423     446 ..     416     457 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00037
   PF06745.8  15 GipegrvvlitGepGtGKtifalqFlikgaeeygepgvf 53 
                 Gi   r+vli G +G+GKt++a     + ++   e++ +
  MMETSP0890-20130614|5523_1 148 GIQGPRAVLIHGPTGCGKTLLARAVSREACVD--EKCAY 184
                 888999***************98765555544..66666 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.002
   PF06745.8  15 GipegrvvlitGepGtGKtifalq 38 
                 G+p  + vl++G pG+GKt++a  
  MMETSP0890-20130614|5523_1 423 GVPLPAGVLLYGPPGCGKTLLARA 446
                 77888889*************975 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0052       1.6       2      22 ..     155     175 ..     154     190 .. 0.85
   2 !   12.0   0.0   0.00043      0.13       2      23 ..     430     454 ..     429     483 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0052
   PF13521.1   2 ivitGgpstGKTtlleaLaar 22 
                 + i G+ ++GKT l++a++++
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSRE 175
                 789**************9975 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00043
   PF13521.1   2 ivitGgpstGKTtlleaLaar...g 23 
                 + + G+p++GKT l++a+a++   +
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASEssaN 454
                 6799**************9654333 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0032      0.97      21      44 ..     153     176 ..     146     194 .. 0.78
   2 !   10.0   0.0    0.0015      0.45      23      44 ..     430     451 ..     427     460 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0032
                 SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13  21 siiviyGprrsGKTaLlkeileel 44 
                 + ++i Gp ++GKT L + + +e 
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREA 176
                 5689**********9999888776 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0015
                 EEEE--TT---HHHHHHHHHH- CS
  PF01637.13  23 iviyGprrsGKTaLlkeileel 44 
                 +++yGp ++GKT L + +++e 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASES 451
                 689***********99999886 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.096        29      36      50 ..     155     169 ..     148     177 .. 0.87
   2 ?    2.8   0.0       0.2        61     130     164 ..     202     237 ..     192     252 .. 0.76
   3 !   10.9   0.1   0.00064       0.2      12      56 ..     406     450 ..     398     479 .. 0.73
   4 ?   -2.3   0.0       7.3   2.2e+03     129     157 ..     474     501 ..     460     529 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.096
   PF13481.1  36 tllaGapgtGKStla 50 
                 +l+ G++g+GK+ la
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLA 169
                 79***********98 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.2
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg..densnsd 164
                  +r+ +++ +   p+l+ iD l++l+g+  ++ sn++
  MMETSP0890-20130614|5523_1 202 TQRVFQLVVA-STPALLFIDDLDALFGAssGSSSNRA 237
                 4788899999.78*************99655555554 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00064
   PF13481.1  12 aedldtppppldwlvkgllprgsltllaGapgtGKStlalqlaaa 56 
                 a+ + +p++ ++      +p+ + +ll+G+pg+GK+ la + a  
  MMETSP0890-20130614|5523_1 406 AASILAPIASPEKFAALGVPLPAGVLLYGPPGCGKTLLARAVASE 450
                 5556666666666666555666668*************9887765 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 7.3
   PF13481.1 129 dlerllaaieelegpdlvviDtlsrlvgg 157
                 ++++l a++++   p +v +D +++l++ 
  MMETSP0890-20130614|5523_1 474 AVRNLFARARS-SAPCIVFFDEIDALCPR 501
                 57788888888.66999999999998876 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.017       5.2       6      30 ..     155     179 ..     152     180 .. 0.87
   2 !   11.3   0.0   0.00054      0.16       6      23 ..     430     447 ..     427     459 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.017
   PF13479.1   6 vliYGkpGiGKTslaktlpktlfld 30 
                 vli G+ G GKT la+ +++  ++d
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREACVD 179
                 89*************9988877776 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00054
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 vl+YG+pG GKT la+ +
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAV 447
                 89************9876 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0     0.001       0.3       3      46 ..     154     197 ..     152     222 .. 0.80
   2 ?    4.5   0.0     0.064        20       4      24 ..     430     450 ..     428     455 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.001
   PF10662.4   3 killiGkvgaGKTtLtqalkgeelkykkTQaielseeviDtPGe 46 
                  +l+ G++g+GKT L++a++ e+   +k  + e++ + + + G+
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAVSREACVDEKCAYFEVNGAELACCGD 197
                 57889******************999999999988877777775 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.064
   PF10662.4   4 illiGkvgaGKTtLtqalkge 24 
                 +ll G+ g+GKT L++a+  e
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASE 450
                 899************999876 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0047       1.4      55     116 ..     154     222 ..     147     237 .. 0.75
   2 ?    6.4   0.0     0.011       3.2      55      82 ..     429     456 ..     419     495 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0047
   PF05673.8  55 nvLLwGarGtGKSslvkallneya.eegLrlievekedlkdl...pkivellr...erperfilfvDDL 116
                  vL+ G  G+GK  l +a+ +e + +e+ +  ev+  +l+     +k+++ +     +++  +lf+DDL
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAVSREACvDEKCAYFEVNGAELACCgdaEKVTQRVFqlvVASTPALLFIDDL 222
                 69*****************998762566999***99999755111344443332225567788999998 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.011
   PF05673.8  55 nvLLwGarGtGKSslvkallneyaeegL 82 
                  vLL+G  G+GK  l +a+ +e +++ +
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARAVASESSANFI 456
                 59*****************999887764 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0061       1.9       2      24 ..     156     180 ..     155     225 .. 0.64
   2 ?    7.2   0.0      0.01       3.1       5      67 ..     434     495 ..     430     502 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0061
  PF01443.13   2 vvhGvpGcGKStlirkllrt..ltv 24 
                 ++hG  GcGK+ l r + r+  + +
  MMETSP0890-20130614|5523_1 156 LIHGPTGCGKTLLARAVSREacVDE 180
                 79***********999999963222 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.01
  PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                 G pGcGK+ l r ++++    + +++   el+ + + ++     r v+ +   +  s   i+++DE+
  MMETSP0890-20130614|5523_1 434 GPPGCGKTLLARAVASEssanFISIKG-PELLDKYVGES----ERAVRNLFARARSSAPCIVFFDEI 495
                 88*************994444333333.34444433322....333333333333333447777776 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.013       4.1      18      42 ..     155     179 ..     149     270 .. 0.89
   2 ?    6.5   0.0     0.016       4.8      19      60 ..     431     479 ..     427     551 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.013
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  18 tlipGafgcGktvisqslsknsnsd 42 
                 +li G+ gcGkt ++  +s++++ d
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREACVD 179
                 6899**************9998644 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.016
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx RF
  PF00006.20  19 lipGafgcGktvisqslsknsnsdaiiyvg.......iGergnevaevl 60 
                 l+ G++gcGkt ++  ++ +s+++ i + g       +Ge ++ v+++ 
  MMETSP0890-20130614|5523_1 431 LLYGPPGCGKTLLARAVASESSANFISIKGpelldkyVGESERAVRNLF 479
                 789******************9999844444444444566666666555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.18        54      19      37 ..     154     172 ..     128     236 .. 0.79
   2 !    9.6   0.0    0.0019      0.58      20      87 ..     430     544 ..     413     560 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.18
   PF13086.1  19 itliqGpPgtGKtttivel 37 
                   li+Gp g+GKt    ++
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAV 172
                 68***********544443 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0019
   PF13086.1  20 tliqGpPgtGKtttivelisql..............lsek..................................seseakkkkrvLvcapsnaavDeilerlle.ldeegkkynpki 87 
                  l+ GpPg+GKt    ++ s+               +  +                                   + +a +++   +   sna  D ++ +ll+ ld    + ++ +
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESsanfisikgpelldK--YvgeseravrnlfararssapcivffdeidalcprRAGSAISGASATASDGSNAVTDRVVNQLLTeLDGLESRGQVYV 544
                 5899********8888888887555555555555550..0555555566666666667777777777788888889999999*******************9998444444444444 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00044      0.13     126     154 ..     150     178 ..     110     201 .. 0.81
   2 ?    1.1   0.0      0.44   1.3e+02     131     151 ..     430     450 ..     417     459 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00044
  PF00437.15 126 qargnilvsGgTgsGKttllnallaeink 154
                 q  + +l+ G+Tg GKt l+ a+  e   
  MMETSP0890-20130614|5523_1 150 QGPRAVLIHGPTGCGKTLLARAVSREACV 178
                 445789**************999887655 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.44
  PF00437.15 131 ilvsGgTgsGKttllnallae 151
                 +l+ G+ g GKt l+ a+ +e
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASE 450
                 7999**********9998776 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0023       0.7      22      39 ..     155     172 ..     147     174 .. 0.89
   2 ?    3.4   0.0      0.24        73      23      39 ..     431     447 ..     430     449 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0023
   PF13476.1  22 tlItGpNGsGKTTildAi 39 
                 +lI+Gp+G+GKT +  A 
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAV 172
                 79**********999885 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.24
   PF13476.1  23 lItGpNGsGKTTildAi 39 
                 l++Gp G+GKT +  A 
  MMETSP0890-20130614|5523_1 431 LLYGPPGCGKTLLARAV 447
                 89*********999885 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0      0.01       3.1      37      60 ..     155     178 ..     149     230 .. 0.77
   2 ?    5.5   0.0     0.035        11      37      62 ..     430     455 ..     425     464 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.01
                 EEEE-------HHHHHH---HHHH CS
  PF00308.13  37 lfiygevGlGKtHLLqaignevle 60 
                 ++i+g +G GKt L +a+  e+  
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSREACV 178
                 79****************988754 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.035
                 EEEE-------HHHHHH---HHHHHS CS
  PF00308.13  37 lfiygevGlGKtHLLqaignevlena 62 
                 +++yg  G GKt L +a++ e  +n+
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANF 455
                 79****************99988776 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.032       9.8      17      38 ..     154     175 ..     143     183 .. 0.84
   2 ?    7.0   0.0     0.012       3.7      18      40 ..     430     452 ..     419     469 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.032
  PF02367.12  17 vvlLsGdlGaGKTtlvkglakg 38 
                  vl++G+ G GKT l++++ ++
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAVSRE 175
                 6899*************98765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.012
  PF02367.12  18 vlLsGdlGaGKTtlvkglakglg 40 
                 vlL G+ G GKT l++++a++ +
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESS 452
                 89***************998765 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0016      0.48      23      44 ..     150     171 ..     115     188 .. 0.78
   2 ?    2.7   0.0      0.29        89      27      54 ..     429     456 ..     397     470 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0016
  PF04851.10  23 dekkrglivmaTGtGKTlvaas 44 
                 +  + +li+ +TG+GKTl+a +
  MMETSP0890-20130614|5523_1 150 QGPRAVLIHGPTGCGKTLLARA 171
                 567889************9864 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.29
  PF04851.10  27 rglivmaTGtGKTlvaasliarlarkfl 54 
                  +l+  + G+GKTl+a +++++   +f+
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARAVASESSANFI 456
                 67888899********988777766776 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       9.6   2.9e+03      54      97 ..      24      67 ..      19      71 .. 0.70
   2 ?    2.3   0.0      0.34     1e+02       2      22 ..     155     175 ..     154     185 .. 0.87
   3 ?    9.0   0.0     0.003      0.91       2      31 ..     430     459 ..     429     503 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 9.6
   PF07726.6 54 fefkkGpvfanllladeinrappktqsalleameerqvtveget 97
                ++++ Gp +    l+      + k+q al ea++e    ++get
  MMETSP0890-20130614|5523_1 24 ISLSDGPSVVVSTLTQRHQEYARKSQPALREAVREALAMARGET 67
                55666666666666666666778999999999999876666655 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.34
   PF07726.6   2 vllegvPGlaktllvkalaka 22 
                 vl++g  G +ktll++a+++ 
  MMETSP0890-20130614|5523_1 155 VLIHGPTGCGKTLLARAVSRE 175
                 899**************9975 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.003
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG +ktll++a+a+  +++f  i+
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANFISIK 459
                 7999****************9999997775 PP

>> PF01745.11  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.031       9.3       3      25 ..     154     176 ..     152     179 .. 0.87
   2 ?    0.4   0.0      0.87   2.6e+02       3      86 ..     222     308 ..     220     313 .. 0.84
   3 ?    4.0   0.0      0.07        21       5      32 ..     431     458 ..     428     460 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.031
  PF01745.11   3 vylifGatttGKtaeaiklaket 25 
                 + li+G+t+ GKt  a ++++e 
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAVSREA 176
                 579*************9999986 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.87
  PF01745.11   3 vylifGatttGKtaeaiklaketgapvi..vlDRvqcyselavgsGrpleeelegtrRiyld.drslseGvidaeeanerLikeves 86 
                 + ++fGa +   ++ a +++ ++ a+ +   lD +   + +++ +  ++++ l++  R +   +r+++ G  +a++   +L + + +
  MMETSP0890-20130614|5523_1 222 LDALFGASSGSSSNRALEISGRRFASTLcgCLDAIGPEQRISIIGATASADSLDSRLRRFGRfEREIALGAPNAKDRAAMLAAFLAK 308
                 568999999999999****9999888884459**********999999999999877777666***********9999999877666 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.07
  PF01745.11   5 lifGatttGKtaeaiklaketgapvivl 32 
                 l++G+ + GKt  a ++a e +a  i++
  MMETSP0890-20130614|5523_1 431 LLYGPPGCGKTLLARAVASESSANFISI 458
                 89********************998875 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026       7.9      46      69 ..     153     176 ..     133     188 .. 0.84
   2 ?    6.3   0.0     0.011       3.2      49      84 ..     431     466 ..     427     495 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.026
  PF03215.10  46 rillltGPsGcgKsTtvkvlskel 69 
                 r +l+ GP+GcgK+   + +s+e 
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREA 176
                 4689**********9888888876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.011
  PF03215.10  49 lltGPsGcgKsTtvkvlskelgikliewlnpvslke 84 
                 ll GP+GcgK+   + ++ e   ++i    p++l +
  MMETSP0890-20130614|5523_1 431 LLYGPPGCGKTLLARAVASESSANFISIKGPELLDK 466
                 899****************99999999888888765 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.01       3.1       2      43 ..     153     191 ..     152     207 .. 0.80
   2 ?    4.5   0.0     0.042        13       4      25 ..     430     451 ..     427     483 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.01
   PF09848.4   2 kvilvtGvaGtGKtvvalnllaeledseeertavflsgNhpl 43 
                 + +l++G  G GKt++a ++  e+     +++ +++ +N+++
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSREA---CVDEKCAYFEVNGAE 191
                 579**************9999887...555566666666665 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.042
   PF09848.4   4 ilvtGvaGtGKtvvalnllael 25 
                 +l  G +G GKt++a ++++e 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASES 451
                 6778***********9999887 PP

>> PF07931.7  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1   3.4e+02       3      22 ..     154     173 ..     152     180 .. 0.88
   2 ?   10.4   0.0    0.0011      0.33       4      93 ..     430     527 ..     428     545 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.1
                 EEEE-----------HHHHH CS
   PF07931.7   3 iilLnGgsssGKsslaralq 22 
                  +l++G +  GK+ lara+ 
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAVS 173
                 699**************985 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0011
                 EEE-----------HHHHHHHSSS-EEEE--HHHHHHS-GGGGT-----B-------B.........--HHHHH--------HHHHH---EEEEE---- CS
   PF07931.7   4 ilLnGgsssGKsslaralqevldepwlhlgvDafvealppkrqdeadglefeteleei.........gpeldlllaalyeavaamaraGnnvivDdvil 93 
                 +lL G +  GK+ lara+ + + + ++ ++  +++++   +   +  +l f+  +  +         ++++++ + + + +  a a  G n + D v+ 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESSANFISIKGPELLDKYVGESERAVRNL-FARARSSApcivffdeiDALCPRRAGSAISGASATASDGSNAVTDRVVN 527
                 89***************************98888887666666655555.222222223345555559***************************8875 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.02       6.1       4      26 ..     153     175 ..     150     194 .. 0.83
   2 ?    4.4   0.0     0.057        17       6      43 ..     430     467 ..     427     476 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.02
                 -EEEEE--TT---HHHHHHHHHS CS
   PF09439.5   4 pavllvGlsdsGKTslftrLttd 26 
                 +avl+ G++ +GKT+l   ++ +
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTLLARAVSRE 175
                 68*************98877766 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.057
                 EEEE--TT---HHHHHHHHHSS-------S.S-EEETT- CS
   PF09439.5   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv 43 
                 vll G+  +GKT+l   + ++s     +S+  +++ +k+
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVASESS-ANFISIkGPELLDKY 467
                 89**********99877766654.445555455555555 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         8   2.4e+03     189     220 ..      11      43 ..      10      67 .. 0.63
   2 ?    3.2   0.0      0.11        32      24      41 ..     153     169 ..     135     176 .. 0.80
   3 ?   -0.5   0.0       1.4   4.4e+02     153     173 ..     212     230 ..     198     276 .. 0.82
   4 ?    4.9   0.0     0.031       9.4      26      53 ..     430     456 ..     427     474 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 8
   PF10236.4 189 lvrlfldlls.gksdlknggvvlalaatsssns 220
                 lv l+++l+s g+ +l+ g +v++   t++ ++
  MMETSP0890-20130614|5523_1  11 LVYLIKKLVSnGEISLSDGPSVVVSTLTQRHQE 43 
                 788888898888888888888744333333322 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.11
   PF10236.4  24 krvvltGekgsGKSvlLa 41 
                 + v+++G++g+GK++ La
  MMETSP0890-20130614|5523_1 153 RAVLIHGPTGCGKTL-LA 169
                 66899********86.45 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.4
   PF10236.4 153 skrvpvlvavDglnalfrtse 173
                 s   p l+ +D+l+alf+ s+
  MMETSP0890-20130614|5523_1 212 S--TPALLFIDDLDALFGASS 230
                 3..599***********9975 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.031
   PF10236.4  26 vvltGekgsGKSvlLaqavayAlekgwv 53 
                 v+l+G++g+GK+ lLa+ava   + +++
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKT-LLARAVASESSANFI 456
                 689********7.688888876666666 PP

>> PF02456.10  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0081       2.5      86     107 ..     151     172 ..     123     181 .. 0.87
   2 ?    3.3   0.0     0.077        23      89     110 ..     429     450 ..     420     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0081
  PF02456.10  86 qPvigvvygptgsGksqllrnl 107
                  P ++++ gptg+Gk+ l r++
  MMETSP0890-20130614|5523_1 151 GPRAVLIHGPTGCGKTLLARAV 172
                 588999***********99976 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.077
  PF02456.10  89 igvvygptgsGksqllrnllsa 110
                  +++ygp g+Gk+ l r++ s 
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARAVASE 450
                 5678*************99875 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0042       1.3      13      32 ..     151     170 ..     137     218 .. 0.85
   2 ?    0.9   0.0      0.82   2.5e+02      16      33 ..     429     446 ..     420     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0042
                 SS-EEEEEC-TT---HHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  13 gggdvlvaaeTGsGKTlafl 32 
                 g + vl++++TG GKTl + 
  MMETSP0890-20130614|5523_1 151 GPRAVLIHGPTGCGKTLLAR 170
                 4578************9875 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.82
                 EEEEEC-TT---HHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
  PF00270.24  16 dvlvaaeTGsGKTlafli 33 
                  vl+ ++ G GKTl +  
  MMETSP0890-20130614|5523_1 429 GVLLYGPPGCGKTLLARA 446
                 58999********98865 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.22        68     116     134 ..     154     172 ..     123     184 .. 0.83
   2 ?    6.7   0.0    0.0084       2.5     117     136 ..     430     449 ..     428     453 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.22
  PF01057.12 116 tvwfyGpantGktnlaeaI 134
                 +v+++Gp  +Gkt la+a 
  MMETSP0890-20130614|5523_1 154 AVLIHGPTGCGKTLLARAV 172
                 7999************997 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0084
  PF01057.12 117 vwfyGpantGktnlaeaIak 136
                 v++yGp+ +Gkt la+a a 
  MMETSP0890-20130614|5523_1 430 VLLYGPPGCGKTLLARAVAS 449
                 799*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        45  (0.0032914); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:01.57
# Mc/sec: 1069.97
//
Query:       MMETSP0890-20130614|5528_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-06   27.6   4.2    2.8e-06   27.2   2.9    1.2  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
       0.34   10.5   7.7        1.8    8.2   1.7    2.6  2  PF11381.3  Protein of unknown function (DUF3185)


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   2.9     4e-10   2.8e-06       4     118 ..      17     132 ..      14     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4e-10
  PF02466.14   4 ektvlagvagfalGavyGlfmrsmhaatklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleglrgkndllnsvaAGaltGavlarrg.gpqaaavgaagfaafs 118
                 ek +  +++g+a+G++yG + ++++  ++  ++ +l   +  ++++m +     a+ +a v+++Y + e +++++rg+ d + ++ + +++Ga++++r+     a + ++ fa++ 
  MMETSP0890-20130614|5528_1  17 EKLLRNMGLGVAIGGIYGSIRSAWDVPRTGSDGITLAVDVLPSFKKMWNYVGGGAALLAGVALTYTLSEGLVASVRGEYDYYSTMSGSFMSGAFIGARSlRALRAFSYGVAFAIVG 132
                 67888999**************9965555556666666777777777776666****************************************88888765556666666666654 PP

>> PF11381.3  Protein of unknown function (DUF3185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.7   0.00027       1.8      27      58 ..      48      79 ..      21      80 .. 0.77
   2 ?    4.9   0.2    0.0029        20      26      57 ..     103     134 ..      85     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00027
   PF11381.3 27 sqvtravTGsptdktilyligGvvavivGlvl 58
                + +t av   p+ k ++ ++gG++a+++G+ l
  MMETSP0890-20130614|5528_1 48 DGITLAVDVLPSFKKMWNYVGGGAALLAGVAL 79
                556666666677899**************875 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0029
   PF11381.3  26 esqvtravTGsptdktilyligGvvavivGlv 57 
                 +s ++ a+ G+ + ++   +  Gv++ ivGl+
  MMETSP0890-20130614|5528_1 103 GSFMSGAFIGARSLRALRAFSYGVAFAIVGLT 134
                 4667888889999999999999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:01.25
# Mc/sec: 302.90
//
Query:       MMETSP0890-20130614|5513_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   29.1   0.1    8.4e-07   28.3   0.1    1.4  1  PF00569.12 Zinc finger, ZZ type


Domain annotation for each model (and alignments):
>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   6.2e-11   8.4e-07       2      32 ..     190     219 ..     189     226 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 6.2e-11
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-H CS
  PF00569.12   2 kkqykCniCkecpiigvRyhclkcsdYDLCq 32 
                 ++   C++C   piig+R+h lk +dYDLC+
  MMETSP0890-20130614|5513_1 190 HFGIVCDGCDMSPIIGTRWH-LKGKDYDLCD 219
                 77889***************.9********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       856  (0.0626097); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.72
# Mc/sec: 1337.97
//
Query:       MMETSP0890-20130614|5531_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   14.0   3.4        2.3    8.0   1.3    2.4  2  PF10241.4 Uncharacterized conserved protein
       0.11   12.3   3.8        3.2    7.6   2.1    3.3  2  PF08826.5 DMPK coiled coil domain like
       0.16   11.0   9.7       0.27   10.2   6.8    1.3  1  PF10234.4 Clusterin-associated protein-1
       0.17   11.7   3.8       0.39   10.5   2.7    1.5  1  PF09543.5 Protein of unknown function (DUF2379)


Domain annotation for each model (and alignments):
>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0059        20      40      78 ..     195     234 ..     187     239 .. 0.78
   2 ?    8.0   1.3   0.00068       2.3      27      83 ..     292     348 ..     283     352 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0059
   PF10241.4  40 lsqarLkevraefaegtrllkemkkDL.dwifkkvrslks 78 
                 + +++L+++ a++ e+t+ +k++  D  ++    ++s+++
  MMETSP0890-20130614|5531_1 195 KDDECLSSIIANYLENTKHAKDIDTDIaQSLTTNIKSISA 234
                 5678*******************99983345556666665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00068
   PF10241.4  27 LekknreLlelnalsqarLkevraefaegtrllkemkkDLdwifkkvrslksklakq 83 
                 Le +n++L    +l+++ + ++++e+ +   ++ +++  L+++  +++   s+l+++
  MMETSP0890-20130614|5531_1 292 LEIQNEMLKAALDLADKEITSLSSELTQAKSTASQTQFTLQHTKSRLQHTESRLQRT 348
                 7889*********************************************99999987 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   1.5e+03      16      32 ..     131     147 ..     127     150 .. 0.86
   2 ?    7.6   2.1   0.00092       3.2      20      51 ..     331     362 ..     298     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.42
   PF08826.5  16 lqeeLekvkaanlafes 32 
                 ++eeL  v a+++af +
  MMETSP0890-20130614|5531_1 131 IREELASVPASSVAFAR 147
                 899********999965 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00092
   PF08826.5  20 LekvkaanlafeskLkeaEkknreLeeeleqL 51 
                 L+  k   +++es+L+ +E++ + +   +++L
  MMETSP0890-20130614|5531_1 331 LQHTKSRLQHTESRLQRTESREKKMRGXIDML 362
                 66666677788888888888888888777776 PP

>> PF10234.4  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.8   7.9e-05      0.27      87     216 ..     221     348 ..     207     352 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.9e-05
   PF10234.4  87 vtsvlykamksteeeeeeeskakvdlssklsdlkaarqlaseitekgakLydlLek..eldlkesrqkalsrplelaevekalkeaikelaeelqklkaelenlksdeanLeekiekkkqelertqkrLkal 216
                 +++ l++ +ks  ++e   s  +++l  +l+d+ +++       +k  +++  L    +   k+++++a+++++ l+  +++lk+a++ +++e+++l+ el+++ks  ++ +  +++ k+ l++t+ rL+  
  MMETSP0890-20130614|5531_1 221 IAQSLTTNIKSI-SAEASLSLLRFALRYQLKDIEKLCVT---AASKNRHIISNLVSpsHCLGKKRKSAAMEEEIPLEIQNEMLKAALDLADKEITSLSSELTQAKSTASQTQFTLQHTKSRLQHTESRLQRT 348
                 788888888888.66666699999997777777665555...555666666555431144667777788888888888899************************************************976 PP

>> PF09543.5  Protein of unknown function (DUF2379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.7   0.00011      0.39      17      88 ..     286     358 ..     280     361 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   PF09543.5  17 leegepLeLtdev.ralLrrtArevaiseadaeeaLateesAlaLlreisrRiregskrlvealtralrlrda 88 
                 +ee+ pLe+++e+ +a L  + +e++   ++ ++a +t+++ +  l++++ R+++  +rl+++ +r +++r  
  MMETSP0890-20130614|5531_1 286 MEEEIPLEIQNEMlKAALDLADKEITSLSSELTQAKSTASQTQFTLQHTKSRLQHTESRLQRTESREKKMRGX 358
                 58899****9997699*************************************************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       952  (0.0696314); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.67
# Mc/sec: 1301.90
//
Query:       MMETSP0890-20130614|5539_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.2   1.1       0.15   11.8   0.0    1.8  2  PF08109.6 Lactocin 705 family


Domain annotation for each model (and alignments):
>> PF08109.6  Lactocin 705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5         1   1.4e+04      13      16 ..      62      65 ..      62      66 .. 0.86
   2 ?   11.8   0.0   1.1e-05      0.15      10      28 ..      97     113 ..      92     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 1
   PF08109.6 13 LKGY 16
                LKGY
  MMETSP0890-20130614|5539_1 62 LKGY 65
                8999 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.1e-05
   PF08109.6  10 PDFLKGYLHGISAANKHKK 28 
                 PDF    L GIS  NKHKK
  MMETSP0890-20130614|5539_1  97 PDFS--TLSGISLCNKHKK 113
                 6663..499*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.65
# Mc/sec: 1102.32
//
Query:       MMETSP0890-20130614|5541_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-05   23.2   7.7    6.6e-05   23.2   5.3    4.3  5  PF07001.6 BAT2 N-terminus


Domain annotation for each model (and alignments):
>> PF07001.6  BAT2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   5.3   4.8e-09   6.6e-05      58     158 ..      75     183 ..      37     212 .. 0.69
   2 ?   -2.3   0.9      0.31   4.3e+03     115     115 ..     247     247 ..     195     302 .. 0.56
   3 ?   -2.8   0.1      0.45   6.1e+03     104     126 ..     293     312 ..     277     340 .. 0.48
   4 ?   -2.4   3.8      0.32   4.4e+03      89     122 ..     441     474 ..     390     534 .. 0.57
   5 ?   -5.3   6.0         1   1.4e+04     123     168 ..     522     569 ..     468     593 .. 0.57

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.8e-09
   PF07001.6  58 PPPanLPSLkaEnkgndpnvslVpkdGtGwaskqeqs....dekssavaaaqtpesqpaavsqssass...kpkpsqe..atdevpggakswaqasakegaqgdgskasq 158
                 P P n PSL+ En+g+d  v+lVp +G+ was q  +    +ek    +a++++  +p a  +++a +    p+p+qe  +++e    +k +a+ ++ +    d  +++q
  MMETSP0890-20130614|5541_1  75 PTPLNTPSLRRENRGQDLSVKLVPGGGS-WASPQTPPkpleEEKAPRKLAPSASVDKPLAPWAKPAENeinVPQPKQEifHSQEPKIEPKEEAKLEVIHDEISDSHQKLQ 183
                 889*************************.***998651111444455566677778888888899988555333333311222222445555555555555545444433 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.31
   PF07001.6 115 s 115
                  
  MMETSP0890-20130614|5541_1 247 R 247
                 1 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 0.45
   PF07001.6 104 aqtpesqpaavsqssasskpkps 126
                 +qt++s p++++    +++p p+
  MMETSP0890-20130614|5541_1 293 QQTQTSLPEPHP---MPHQPMPQ 312
                 222222222222...22222222 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.32
   PF07001.6  89 skqeqsdekssavaaaqtpesqpaavsqssassk 122
                 +k e++ ek+++ +++qt  ++++ + +  +s++
  MMETSP0890-20130614|5541_1 441 QKPEKTIEKTTDKTTKQTNSTKQHNGKKVNGSNT 474
                 2222222222222222222222222222222221 PP

  == domain 5    score: -5.3 bits;  conditional E-value: 1
   PF07001.6 123 pkpsqeatdevpggakswaqasakegaqgdgskas..qlssfsreefp 168
                  ++  e++ e +   +s a++ +k+g+++d +++   ++s++sr+++ 
  MMETSP0890-20130614|5541_1 522 INADDEHKIEKAHPRQSSATGRNKRGGRKDATEKKksTTSEKSRNNNN 569
                 344444444555556667777777777766654332255555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1607  (0.117539); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.41u 0.44s 00:00:01.85 Elapsed: 00:00:01.07
# Mc/sec: 1404.22
//
Query:       MMETSP0890-20130614|5540_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-47  162.8   1.7    1.5e-47  162.3   1.2    1.2  1  PF12849.2  PBP superfamily domain
    0.00076   18.8   2.0     0.0014   18.0   1.4    1.4  1  PF13828.1  Domain of unknown function (DUF4190)
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.023   14.4   0.0    1.3  1  PF04103.10 CD20-like family
      0.026   14.2   1.1         11    6.0   0.1    2.8  2  PF04508.7  Viral A-type inclusion protein repeat
       0.03   13.8   0.0      0.076   12.5   0.0    1.7  2  PF13531.1  Bacterial extracellular solute-binding protein
      0.037   13.2   0.0      0.061   12.5   0.0    1.3  1  PF13343.1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> PF12849.2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   1.2   6.5e-51   1.5e-47      12     281 .]      57     366 ..      26     366 .. 0.89

  Alignments for each domain:
  == domain 1    score: 162.3 bits;  conditional E-value: 6.5e-51
   PF12849.2  12 ltgaGsstvspalrqvada.faksipgatvtyaavGSgtgikaflegd......vdfalsdrplseeelaaeagnatgqsavgeliqipvaydavaivvnkd....nplnkltreqlckIfagkitnWnd.........lgapadlpItvvsRsdgSGttelftnylkealpst.............aagigangsegvasavst.dgaigyvssdfelqlasasiadvdnaaggivlptpanv.....akalkalti......nyldgdlvpveeniaagaYPisrplyiivkqcykgs...salakaFldfllsde 281
                 l+g+G++++s+++++ ++   a+++p +++ty+avGS+tg+ +f+  d       df++ d+pl ++e +    +++g    + ++++p+  +a  +++n++    ++l  lt + l++If + it+W+d         +++p+++pI+v++R  gS+tt   t+yl  a+ps+             +++ +a+gs+g++ a+s+ +++igy++s++++++ ++ + +++n  g++  + +a +     a+a++al++        +d + v++++ +++ ++Pi+  +y++++ + + +    al+kaF++++lsd+
  MMETSP0890-20130614|5540_1  57 LHGSGTTNPSKFYWEIMSLfEAQAKPSVKMTYRAVGSSTGQLEFIGADqdyaayNDFGSGDIPLDSDEYT--ELTGQG----VTVLHVPFSLGAMSFFHNVPdapsDGLR-LTSCVLADIFNRDITTWDDdeilalnpdFSPPSGQPIKVYHRVFGSSTTAGITTYLHAACPSKwpesqvgstidwaEGTFEAQGSGGMSAAISGeEYTIGYIDSGHGHDD-GLFEIALQNDFGTYQTSIEASAnggvkAAADEALQLgvlpsdPTADFSAVSLHNMPGEFTWPIVAISYLYLRADQTENgekGALLKAFVEYVLSDD 366
                 9****************996566677788*****************99*******************994..466777....******************7757777777.****************************88899**************************6666666666666666577777999************************99.7777779***********99999999999999999899**99668889999***********************9999****************96 PP

>> PF13828.1  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.4   6.1e-07    0.0014       1      37 [.     481     512 ..     481     524 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.1e-07
   PF13828.1   1 lAiaSLvlgilglvllglllsivaiilGhvAlrqIrr 37 
                 lA ++L+l+i+gl     ++++++iilG++A  +++r
  MMETSP0890-20130614|5540_1 481 LARIALILAIIGL-----IFGLAGIILGIMAYMRVNR 512
                 6888999999885.....99***********988877 PP

>> PF04103.10  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.023      53     105 ..     475     528 ..     470     551 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1e-05
  PF04103.10  53 kkptkllvkgslglnivSlilalagiillivslalqssyesyqsse.....tspcsee 105
                 +++ k l++  l+l i++li+ lagiil+i+ + ++  ++s  +++     +     +
  MMETSP0890-20130614|5540_1 475 NNSAKRLARIALILAIIGLIFGLAGIILGIMAYMRVNRMFSSSQQNgrsasE----IC 528
                 5667899*****************************9999996666754431....22 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0046        11       1      14 [.      22      35 ..      22      36 .. 0.94
   2 ?    6.0   0.1    0.0046        11       1      14 [.     435     448 ..     435     449 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0046
   PF04508.7  1 rEldrlRrkIsdLe 14
                +El++++ ++sdLe
  MMETSP0890-20130614|5540_1 22 TELESEKADVSDLE 35
                6************9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0046
   PF04508.7   1 rEldrlRrkIsdLe 14 
                 +El++++ ++sdLe
  MMETSP0890-20130614|5540_1 435 TELESEKADVSDLE 448
                 6************9 PP

>> PF13531.1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.7   3.8e+03      15      36 ..      71      94 ..      62     103 .. 0.75
   2 ?   12.5   0.0   3.4e-05     0.076     200     231 .]     346     377 ..     278     377 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.7
   PF13531.1 15 elaaaFea..ktgvkvevsaggsg 36
                e+   Fea  k++vk +++a+gs+
  MMETSP0890-20130614|5540_1 71 EIMSLFEAqaKPSVKMTYRAVGSS 94
                666778663478899999999986 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.4e-05
   PF13531.1 200 lknakhpeaAraFlafLrspeaqailrkyGfr 231
                 + n+++ +  +aF+++++s+++q+ l+ky f+
  MMETSP0890-20130614|5540_1 346 TENGEKGALLKAFVEYVLSDDGQELLTKYNFE 377
                 3456667899*******************995 PP

>> PF13343.1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.061     183     217 ..     347     386 ..     290     401 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.7e-05
   PF13343.1 183 g.akkkelakafidfllspevqailaeagf.kfPvn...t 217
                 +  +k +l+kaf++++ls+++q+ l++ +f   P++   +
  MMETSP0890-20130614|5540_1 347 EnGEKGALLKAFVEYVLSDDGQELLTKYNFeGVPADvlnV 386
                 1478999**********************98899866332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.99
# Mc/sec: 1338.57
//
Query:       MMETSP0890-20130614|5542_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-05   24.9   0.2    3.5e-05   24.1   0.1    1.5  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    8.9e-05   22.6   0.3    0.00035   20.7   0.2    2.0  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.093   11.9   0.1       0.16   11.1   0.0    1.4  1  PF09859.4  Uncharacterized protein conserved in bacteria (DUF2086)


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   7.7e-09   3.5e-05       3      98 ..     124     229 ..     122     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 7.7e-09
   PF13640.1   3 lnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdr..............segvakevedeevv.pkpgrlvlFksdrslHrvtpvgaqgrrlaitgw 98 
                 +n y+ gg+++ H D+  s+s+  tl++ l      +eGG+l+l  +++               e+++ ++++ +   pk+   + F + ++ H+v++v ++g r++it  
  MMETSP0890-20130614|5542_1 124 INIYTTGGHFKSHKDTPNSDSQFGTLVIQLP-TF--FEGGQLVLTHQENvvtalapevshrryGEKPEDAIKRMNNFvPKNMHWAAFFG-DVTHQVKQV-TAGCRITITYV 229
                 899*************999999999999999.66..7********87767*****999877775666666665443369999*******.*********.99999999865 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   7.6e-08   0.00035       6      98 ..     123     231 ..     119     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 7.6e-08
                 EEEEEES--E-EEEEEEEESS...SCEEEEEEE....T--EEEEEE-EE.......................SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
  PF03171.15   6 rvnrYpppekglglgpHtDne...nriltillq....ddggglqfrked.......................kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                  +n Y     g+++++H D+    +++ t++ q    ++gg l +++++                       k   + +              +    ++ +v+H+v+ +t+g Ri++++ l+
  MMETSP0890-20130614|5542_1 123 KINIYT---TGGHFKSHKDTPnsdSQFGTLVIQlptfFEGGQLVLTHQEnvvtalapevshrrygekpedaiKRMNNFVP-----------KNMHWAAFFGDVTHQVKQVTAGCRITITYVLH 231
                 6899**...***************88888888888998888888888888999999988995555444444433333333...........344555666669*****************987 PP

>> PF09859.4  Uncharacterized protein conserved in bacteria (DUF2086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.6e-05      0.16      69     171 ..     127     231 ..     111     233 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.6e-05
   PF09859.4  69 ygegdynaLHqdl.yGelvFPlqvvilLsepgedftGGefvlteqrpraqs.raevvplkqG....dalifavrerPvkgkrgvyrvklrhgvsrvrsGeRltlglifH 171
                 y++g++   H+d+ + +  F    vi      + f+GG++vlt+q++   +  +ev + + G    da+    +  P + + ++    + h v++v +G R+t++ ++H
  MMETSP0890-20130614|5542_1 127 YTTGGHFKSHKDTpNSDSQFGTL-VIQ---LPTFFEGGQLVLTHQENVVTAlAPEVSHRRYGekpeDAIKRMNNFVPKNMHWAAFFGDVTHQVKQVTAGCRITITYVLH 231
                 66666666666652334444432.223...34569**********99887725677777778333234555667789999999999*******************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:01.18
# Mc/sec: 1275.35
//
Query:       MMETSP0890-20130614|5537_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.3e-103  344.3  13.7   5.3e-103  344.3   9.5    1.7  2  PF00262.13 Calreticulin family


Domain annotation for each model (and alignments):
>> PF00262.13  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.3   9.5  3.9e-107  5.3e-103       1     367 []      19     336 ..      19     336 .. 0.94
   2 ?  -10.6   6.5         1   1.4e+04     240     265 ..     354     380 ..     340     392 .. 0.43

  Alignments for each domain:
  == domain 1    score: 344.3 bits;  conditional E-value: 3.9e-107
  PF00262.13   1 vsffeqFedkdewekrWikseakkedeekkykGkwkveegkkykglekdkgLvlkskakhyaisaklekpisnkkkdLvvqYevklq..qklecggayiKLlskesdqeeefssetpyeimFGpdkcgsenk.vhfilrkknpktkekeekhlkkkpisr...kddklthlYtLiikpdntfeiriDgesvkegslledfepplnppkeIkdpedkKPedWddrekipDpeakkpedwdekepetipdpeavkpedwdedepeyIpDpeakkPedwdeeedgeweapliknpkcekkgcgkwkppliknpkYkgkwkppeikNPnYkgkWkprkipnpdytedkeplveepigaigfelwsvksdilfdnili 367
                 v+f+e+F++    e+rW+ks +k e+      G+w  + g++y +++k kg++++s+ k++aisak++ + ++k++dL++q++vk++  +   cgg+yiKLl+ e + e +f ++tpy+imFGpd cg++ + +h+i+       ++++e+ lk+ +++     +d++thlYt+++kp+ ++e++ D++s+ +g++++d+     p+keI+dp+ +KP+dW+d++kipDp+a+kp++wd                    d+p+ IpDpea+kP+dwdeeedgeweap+i+np                  +Ykg+wk+p+i+NP+Ykg+W ++ ipnpdy  d    + + ++ +gfelw+v+++++fdnili
  MMETSP0890-20130614|5537_1  19 VYFEERFDSG-IDESRWKKSMWKGEE----SMGEWVYTPGDWYVDEAKAKGMQVSSDMKFHAISAKMDAEAETKNSDLIIQFTVKHEkkDYAFCGGGYIKLLPGEVNPE-TFGGDTPYSIMFGPDLCGYDISrIHLIF-------EHNGENLLKEDELKLdysDKDEFTHLYTMVLKPSGEYEVFFDQTSKASGNIVDDWA---FPKKEIQDPNVSKPDDWVDEKKIPDPQASKPQGWD--------------------DIPAEIPDPEAEKPDDWDEEEDGEWEAPMIDNP------------------DYKGEWKAPMIDNPAYKGEWIHPLIPNPDYAPDTYAKYDK-LSTVGFELWTVNAGSIFDNILI 336
                 69*****777.99*******999776....59******************************************************9544578**************99.****************************.......666666666666654555678***********************************...89*********************************....................9********************************..................********************************99887666.********************98 PP

  == domain 2    score: -10.6 bits;  conditional E-value: 1
  PF00262.13 240 ipdpeavkpedwde.depeyIpDpeak 265
                 i++ e++  e+w++ +epe  +D+++ 
  MMETSP0890-20130614|5537_1 354 IKEGEKEAKEEWKKlNEPEDSSDEDED 380
                 333333333333321222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.78
# Mc/sec: 1210.47
//
Query:       MMETSP0890-20130614|5545_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.77
# Mc/sec: 886.96
//
Query:       MMETSP0890-20130614|5543_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-37  126.6   0.0    8.5e-37  126.0   0.0    1.2  1  PF01137.16 RNA 3'-terminal phosphate cyclase
    1.2e-19   70.0   0.0    2.4e-19   69.1   0.0    1.5  1  PF05189.8  RNA 3'-terminal phosphate cyclase (RTC), insert domain
  ------ inclusion threshold ------
      0.093   12.5   0.3         13    5.6   0.0    2.5  2  PF02066.10 Metallothionein family 11


Domain annotation for each model (and alignments):
>> PF01137.16  RNA 3'-terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   1.9e-40   8.5e-37       7     227 ..      25     370 ..      21     371 .. 0.94

  Alignments for each domain:
  == domain 1    score: 126.0 bits;  conditional E-value: 1.9e-40
                 -----HHHHHHHHHHH----EEE-STT---------HHHHHHHHHHHHH---EEE--------EEEE--------EEEE----.--HHHHHHHHHHHHTT----EEEEEE----B.TTS--HHHHHHTHHHHH.HH---EEEEEE-----TT.......-----EEEEEE--S------...................................................................................................................--B--HHHHHHHHHHHH---..--EEESS--HHHHHHHHHHHHHSS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx...................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01137.16   7 egGgqilrtalalsalsgkpvrieniRanrskpGLkrqhlsavrllakitnaeveglelgsteleFePgkikggeyevdigta.gsitlvlqtllplllfakeplkitlkGgTdv.kkapsvdylkevtlpll.ekfgieaelkvlkrGfyP.......eGgGevlltvepvkslkaik...................................................................................................................aavDehladqlillmaLaggdvsevrvgeltlhlktnlrviekflgvkfeie 227
                  +Gg  +r +l++s+ls++ + i++iR+ +++pGL r + s+vrll+k+t ++  ++++++++l   Pg + gg++e+d++ + ++i+ +l+ llpl++f+ +pl++ l G T + +   svd +k+  l  l   f ie++l ++kr            G G+++++++pv slk+i+                                                                                                                   + vD+  a + ++lmaL++ dvs  + ++l++   + lr+++ f+g++f i+
  MMETSP0890-20130614|5543_1  25 LRGGREFRARLVMSILSKRRITITGIREAEEEPGLGRDEASFVRLLDKLTSGSRVEINQTGSALKLVPGFLVGGKIEHDVSRSgRGIGWFLEGLLPLAPFCGKPLELILLGATCAgPSWRSVDAIKHGPLVWLaSDFKIECSLIIEKRQAVSskqeqiqDGPGRIIFKCTPVRSLKPIHavdaglvakirgvayatrvapalanrtvaaarktldpyladihiitdaaskrdsapgpgfglalvattttqrsivvdldsscldsseekdtttaknpellakicvehlltqiqsnGIVDSLSAPLFLTLMALSQDDVSVAVLPSLSTACISRLRLLKIFFGTEFVIS 370
                 68******************************************************************************766269***************************76255689******9887662579******99999765422222227**************************************************************************************************************************************************************************************9875 PP

>> PF05189.8  RNA 3'-terminal phosphate cyclase (RTC), insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   5.4e-23   2.4e-19       2     102 ..     206     317 ..     205     318 .. 0.92

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 5.4e-23
                 S----SEEE--EEEESS-THHHHHHH---HHHHTTTSSEE---EEEE-------------EEEEE-----EEEEE--...........------TTT---HHHHHHHHHHHT CS
   PF05189.8   2 ergevkrirGvaysarvpasvaeRmaeaArgvLnklvpdvyietdvkkgrkkgkspGsgisLvaetetgcvlgadal...........gekgkpaEdvGeeaAeqLleeiss 102
                 + g v +irGvay++rv + +a+R ++aAr+ L  ++ d++i td+ ++r+++ +pG+g+ Lva t+t   ++ d                 k +E +++ ++e Ll +i+s
  MMETSP0890-20130614|5543_1 206 DAGLVAKIRGVAYATRVAPALANRTVAAARKTLDPYLADIHIITDAASKRDSAPGPGFGLALVATTTTQRSIVVDLDsscldsseekdTTTAKNPELLAKICVEHLLTQIQS 317
                 67999************************************************************9995555444336789*****99999*******************97 PP

>> PF02066.10  Metallothionein family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0028        13       8      40 ..     263     296 ..     261     300 .. 0.78
   2 ?    4.3   0.0    0.0073        33      33      46 ..     397     410 ..     394     414 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0028
  PF02066.10   8 fGasLvfskktqkkhnL.vdsCCCskstekssnp 40 
                 fG +Lv ++ tq+   +  ds C  +s ek +  
  MMETSP0890-20130614|5543_1 263 FGLALVATTTTQRSIVVdLDSSCLDSSEEKDTTT 296
                 999****998887654335889999999988875 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0073
  PF02066.10  33 stekssnpasCaCs 46 
                 +t +s +p  CaC 
  MMETSP0890-20130614|5543_1 397 ATRESKMPVRCACI 410
                 799**********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.82
# Mc/sec: 1233.25
//
Query:       MMETSP0890-20130614|5544_1  [L=1069]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   20.9   0.3    0.00047   19.6   0.2    1.7  1  PF05699.9 hAT family dimerisation domain


Domain annotation for each model (and alignments):
>> PF05699.9  hAT family dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   3.4e-08   0.00047      28      75 ..     970    1017 ..     962    1022 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.4e-08
   PF05699.9   28 ssryPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnve 75  
                  ++++P+ + l++ v s  +s a++Er  s+++ +l+++r++l +++ e
  MMETSP0890-20130614|5544_1  970 RDKIPVYYALFKSVASSLASQANTERINSKAKLTLSDHRRRLLSKTFE 1017
                  6899***************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       848  (0.0620246); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.40s 00:00:01.81 Elapsed: 00:00:01.28
# Mc/sec: 2001.33
//
Query:       MMETSP0890-20130614|5546_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   12.7   0.4       0.04   12.1   0.3    1.1  1  PF01602.15 Adaptin N terminal region


Domain annotation for each model (and alignments):
>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   2.9e-06      0.04     305     371 ..      78     145 ..      74     151 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-06
  PF01602.15 305 kifllktdddvsirlkaldlllklvdesNvkeivkeLkk.yvsevadeefksklvkaIgrlaekfatd 371
                 +if+l+td+    ++  l+ ++k++  +N + i k L   yv++++ ++f+s+l++a g+la+k+ + 
  MMETSP0890-20130614|5546_1  78 IIFRLQTDRLQCMKKISLEFIVKMAPNNNKENIAKILADcYVADSKQYDFRSALIEACGTLAQKYDEF 145
                 789999999999999*************99999999987699**********************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.84
# Mc/sec: 898.63
//
Query:       MMETSP0890-20130614|5550_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-11   44.6   0.0    2.6e-11   43.4   0.0    1.6  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.9e-15   2.6e-11       2     163 ..       9     170 ..       8     171 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.9e-15
  PF00849.17   2 lvvvnKPagvpvtpeak..ggsekekettatssraeeekkelklvhRLDkatsGllll.....Aksseaan.klakafeerkvrKkYlalvf.....gapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlvelele.tGrkhQiRahla 163
                 + vv KP +vpv+      g  +k +e+   ++ +    +++ lvhRLD+++sG++l+      ++++++  +l++  + r  rK+Y+alv+     ++ +  + ++  ++       e++ +++++ + ++a+t +r+l ++    +  +s +++lv  e++ +Gr hQi++hl+
  MMETSP0890-20130614|5550_1   9 VAVVAKPPSVPVHASPYvgGTIKKIEEKPLLQRARDALGSRINLVHRLDRGASGCVLCvcidrCREPQTLTsELHE--ALRVGRKRYVALVRgtgvfKGQSLGANHTWFDV-------ERPIKDSRG-KINDARTSFRFLGYA----NHLNSDRCSLVLAEPQrSGRWHQIKRHLN 170
                 679************998888899999999999999******************9876444445666655404444..45669********95544433333333333333.......335555555.457899*********....89999*********9548*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.91
# Mc/sec: 711.01
//
Query:       MMETSP0890-20130614|5548_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   12.1   0.0       0.15   11.5   0.0    1.4  1  PF06365.7 CD34/Podocalyxin family


Domain annotation for each model (and alignments):
>> PF06365.7  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.1e-05      0.15      90     131 ..      63     104 ..      57     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.1e-05
   PF06365.7  90 sskeekedk..lpllialvtlgaillLiialltlYclhqRrsqk 131
                  +k+++     ++ l  +++ + +l L  + l+ +c++qR s +
  MMETSP0890-20130614|5548_1  63 KNKKNN--NlnTGALAGIIVAAIVLFLFCCCLAFFCCFQRSSSN 104
                 233333..244789999999997778888889999*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      553  (0.0404476); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.73
# Mc/sec: 574.47
//
Query:       MMETSP0890-20130614|5552_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:01.46
# Mc/sec: 753.38
//
Query:       MMETSP0890-20130614|5555_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-30  104.0   0.0    5.4e-30  103.6   0.0    1.1  1  PF06212.7 GRIM-19 protein


Domain annotation for each model (and alignments):
>> PF06212.7  GRIM-19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0     4e-34   5.4e-30       5     119 ..      37     152 ..      33     156 .. 0.97

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 4e-34
   PF06212.7   5 vkqDlpPpGGykpidfkRvlpkrglsgvamfatligvtavglyklletnkerrreeiEklearnailpllqAErDrrylkqlrrnreeEaelmkdvpgWkvGEsvfkt.drwvePi 119
                   qD+pP+GGy +i  + +  +rg+ g+a+  + +  + +g+y++  +n++r++ + Ek+ ar    p lqAE+D ry  +l  + e Ea++m  v+gWkvGEsv++  d+w++P+
  MMETSP0890-20130614|5555_1  37 PIQDMPPEGGYPKITVANENVSRGPPGWALWLGAVVTISFGYYQVGMGNRQRNAAKREKRCARLSFAPYLQAEEDVRYHAHLTSKIEDEAKIMNGVKGWKVGESVYNNrDHWIPPT 152
                 56*********************************************************************************************************99****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 527.20
//
Query:       MMETSP0890-20130614|5551_1  [L=1098]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-22   78.1   0.0    3.1e-21   75.4   0.0    2.3  3  PF00285.16 Citrate synthase
      1e-12   47.8   0.0    2.8e-12   46.3   0.0    1.8  2  PF00549.14 CoA-ligase
    1.8e-11   43.6   0.0    3.7e-11   42.6   0.0    1.5  1  PF08442.5  ATP-grasp domain
    1.2e-10   41.6   0.1    4.5e-10   39.7   0.0    2.2  2  PF02629.14 CoA binding domain
  ------ inclusion threshold ------
      0.042   13.3   0.0        0.2   11.1   0.0    2.1  3  PF13607.1  Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> PF00285.16  Citrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.85   2.3e+03     286     312 ..     225     250 ..     221     253 .. 0.83
   2 ?   -1.5   0.0      0.27   7.3e+02      12      48 ..     842     880 ..     841     884 .. 0.76
   3 !   75.4   0.0   1.1e-24   3.1e-21     157     355 ..     877    1086 ..     865    1087 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHHHT.TGGG----HHHH CS
  PF00285.16 286 lelaekleevaledlkekklypNvDfy 312
                 l+la k+ e+a+  l ++k  pN+Df 
  MMETSP0890-20130614|5551_1 225 LDLAAKIDETAAF-LVQQKWGPNIDFP 250
                 5788899999888.78889******97 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.27
                 SEEE------.EEE---BHHHHHH.H--HHHHHHHHH-- CS
  PF00285.16  12 issidgekgk.llYrGydiedlae.kssfeevaylLltg 48 
                 is+i  ++g+ l Y G+ i ++      +  v+ lL++ 
  MMETSP0890-20130614|5551_1 842 ISTISDDRGEeLKYSGMLISEVFHeDIGVGGVLSLLWFR 880
                 56666665544***********96477788999999975 PP

  == domain 3    score: 75.4 bits;  conditional E-value: 1.1e-24
                  H..----..-TTHHHHHHHHHHHS--SS-HH.HHHHHHHHTTT--HHHHH---------------TTTHHHHHHH-.--GGGHHHHHHHHHHHT---------S..-SS--HHHHHHHHHHHHH-TT...-HHHHHHHHHHHHHHHT.TGGG----HHHHHHH....HHHH--..........--GGGHHHHHHHHHT---HHHHHHHHT.T----- CS
  PF00285.16  157 lgakgeepseeeaealdlalilhaDHglnaS.TftarvvaStlsdlysavsaaigaLkGplHGgAneevlkmleei.gseeeveeyiekaldkgerimGfGHrv..YkteDPRakilkelaeelaaekgddellelaekleevaledlkekklypNvDfysgv....vlkalg..........ipeelftplFavsRvvGwlAhvieqleknnkiiR 355 
                  l   +++  + +++ ++++l++ aDHg  +S ++ + v++ ++ dl+s++++++ ++ Gp+ GgA   +  m+    ++  ++++++++ ++++  imG+GHr+  +++ D R+ i+ke+a++      ++++l++a ++e+v+++  k+ +l  NvD   +v    +l+++g          i +  +  lF+++R++G + h++ q++ +++++R
  MMETSP0890-20130614|5551_1  877 L-WFRKKLPPYATKFIEMILMVTADHGPAVSgAHNTIVTTRAGKDLVSSLVSGLLTI-GPRFGGALDGAASMMTTAcDKGMTAKDFVNDCKKRNLLIMGIGHRIksLENPDMRVVIIKEYAKKHF---PKTPVLDFALAVEQVTTQ--KRSNLILNVDGCIAVcfvdLLRYCGaftveeadelIANGCMNGLFVLGRSIGFIGHYLDQMRLKQPLYR 1086
                  4.34566789999*************9999978999999****************97.***********999999978899**********************855789999*********6665...89****************..4558999999888883333334444333333334355567788***********************999 PP

>> PF00549.14  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   5.5e+03      84     113 ..     354     388 ..     348     397 .. 0.60
   2 !   46.3   0.0     1e-15   2.8e-12       1     153 []     661     786 ..     661     786 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2
  PF00549.14  84 Gygahedpa...aellkaikeaka..egrelpvva 113
                 G+ + +d+a   ++l+ka+ke k+  ++ ++ v +
  MMETSP0890-20130614|5551_1 354 GIANFTDVAatfKGLIKALKEFKDelKAGNISVFV 388
                 55555555511157899999999866555555544 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 1e-15
  PF00549.14   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkaikeakaegrelpvvarvaGtead..pqels.eqakaleeagveiasskaqalraakav 153
                 ++++G++++e++++i+ +               ++  e +++G+d+++         ++++i++l ++  +p  k+++l +++G g+ e+ +   ++aik+ +    ++p++a+++Gt+a     e++ ++a+a + +  e+a  k+qal+ a+a+
  MMETSP0890-20130614|5551_1 661 VSKSGGMSNELNNIISRN--------------SNGVCEGVAIGGDRYP---------GSRFIDHLLRYNDNPDCKILVLLGEVG-GTDEYDV---VDAIKSGR---IHKPIIAWCIGTCASafSFEVQfGHAGACARGMGETARDKNQALAQAGAI 786
                 579***************..............9**************9.........***************************.9999976...56666666...777************66455557**********************99875 PP

>> PF08442.5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.4e-14   3.7e-11       3     202 .]      27     216 ..      26     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.4e-14
   PF08442.5   3 hEyqakellakygvkvpegavassaeeaeeaakklgakelvvKaQvlaGGRGKagGvklvkskeevkeaakellgkklvtkqtgkegkkvekvlveeavdi..krElYlaivlDraskkpvviaSseGGvdiEevaaksPekilkvaidpakglkeeqareiakklglekelvkqaadiikklyklfvekdatlvEiNPLve 202
                 hE++++ +l k gv+ p+++v+ ++    +  + +++++lv K   l+  RGKag + + k+ +e k+ ++e ++k  +    ++     ++ l+e  v    + E+Y+ iv  r+ +++++   +eGGvdi +v ak     l+++i  +++++ +q+ + +  ++++ e + ++a+++++l k++ e     +EiNP+v+
  MMETSP0890-20130614|5551_1  27 HEFEGRGILVKSGVNDPTSTVTWETLL--QDNAWVKETKLVAKPDQLIKRRGKAGLLAINKTFDECKAWVNERMNKAWK---VENVEGVLNTFLIEPFVPHeqSDEYYICIVSNRDGEEILF--WHEGGVDIGDVDAKA----LRLQIGLTEDVTASQITQKL-LMHVPVERQAKLASFFVTLTKVYRELHFVYMEINPIVV 216
                 9******************99866555..55555669999************************************999...44445578999999987651157**********9998765..68*********9874....89999999988887765543.36677788999************************985 PP

>> PF02629.14  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         5   1.4e+04      62      77 ..     442     458 ..     434     459 .. 0.67
   2 !   39.7   0.0   1.7e-13   4.5e-10       3      96 .]     495     601 ..     493     601 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5
                 T-SEEEE.-S-HHHHHH CS
  PF02629.14  62 dvdvavi.tvPaeeaqe 77 
                 d+++++i tvP+ +a++
  MMETSP0890-20130614|5551_1 442 DPEAKIIhTVPKTSAAD 458
                 5666666488*999987 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1.7e-13
                 TEEEEEE-----..TTTHHHHHHHHEEEEEEEES-TTT--.-B--........--BEESSHHHHHHHC.T-SEEEE-S-HHHHHHHHHHHHH...----EEEE-SS- CS
  PF02629.14   3 etkviviGasglgiqllyhfkellkygikkvfgvnprkvg.tevg........gipvyksvdeleekv.dvdvavitvPaeeaqeaidelve...agikgiviiteg 96 
                 +t++iv+G ++++ q++ +f++++k++ ++v++  + + g   v+         ipvy++++++ +k+ d++v+v +++ +++ e++++  e   ++ik+++ii+eg
  MMETSP0890-20130614|5551_1 495 DTRCIVYGLQQRAVQGMLDFDFMCKRKKPSVAAMVYPFQGnHYVKfywgteetLIPVYTKIKDACDKHiDATVMVNFASFRSVYETCMDTFEnhaNQIKTVAIIAEG 601
                 89*************************99888877775551555599999999***************99******************999866579*******997 PP

>> PF13607.1  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.92   2.5e+03      45      73 ..     581     612 ..     576     617 .. 0.69
   2 ?   11.1   0.0   7.4e-05       0.2       1     131 [.     655     794 ..     655     798 .. 0.81
   3 ?   -3.4   0.0       2.1   5.9e+03     115     132 ..    1036    1053 ..    1033    1055 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.92
   PF13607.1  45 lldylaedp.etkvillylEgirdg..rkfls 73 
                 ++d ++++  ++k++++  Eg+ ++  r++++
  MMETSP0890-20130614|5551_1 581 CMDTFENHAnQIKTVAIIAEGVPEAqtRRLVA 612
                 67777775449999999999998852355555 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.4e-05
   PF13607.1   1 pgkvalisqSGalatalldwaaergigfskvvslGnea..dvdvadlldylaedpetkvillylE.girdgrkflsaarraarkkpvvvlksgr..seagaraaashtgalag....sdavydaafrqaGvlrvdsleel 131
                 pg+v ++s+SG++  +l +  ++++ g+   v +G        + d l  +++ p++k+++l  E g  d  + ++a+++ + +kp++++  g+  s+ + +    h ga a       +  ++a++qaG+++ +s+ e+
  MMETSP0890-20130614|5551_1 655 PGSVCYVSKSGGMSNELNNIISRNSNGVCEGVAIGGDRypGSRFIDHLLRYNDNPDCKILVLLGEvGGTDEYDVVDAIKSGRIHKPIIAWCIGTcaSAFSFEVQFGHAGACARgmgeTARDKNQALAQAGAIVPKSFAEF 794
                 799******************************997542466677777778889*********995556789*********************98777777888888888774111123334578999999888888776 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.1
   PF13607.1  115 aafrqaGvlrvdsleelf 132 
                   ++r +G+  v++ +el+
  MMETSP0890-20130614|5551_1 1036 DLLRYCGAFTVEEADELI 1053
                  67999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.53u 0.40s 00:00:01.93 Elapsed: 00:00:01.46
# Mc/sec: 1802.19
//
Query:       MMETSP0890-20130614|5554_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-18   65.2   2.8    4.1e-09   35.8   0.1    3.2  3  PF13414.1  TPR repeat
    5.1e-10   38.3   4.9    4.6e-05   22.8   0.0    4.5  4  PF07719.12 Tetratricopeptide repeat
    1.3e-09   37.0   2.5    7.9e-05   21.9   0.0    4.2  4  PF00515.23 Tetratricopeptide repeat
    1.3e-06   28.7   1.3    0.00026   21.4   0.0    3.7  4  PF13432.1  Tetratricopeptide repeat
      5e-06   25.8   0.2    5.5e-05   22.5   0.0    2.6  2  PF13181.1  Tetratricopeptide repeat
    2.2e-05   24.1   0.8    0.00077   19.2   0.0    3.0  3  PF13424.1  Tetratricopeptide repeat
    2.6e-05   23.9   0.0        0.5   10.6   0.0    4.9  5  PF13431.1  Tetratricopeptide repeat
    0.00038   20.7   3.3     0.0025   18.1   0.0    3.3  4  PF13428.1  Tetratricopeptide repeat
     0.0022   17.5   0.9      0.012   15.2   0.1    2.6  3  PF13176.1  Tetratricopeptide repeat
     0.0098   15.6   0.5         14    5.5   0.0    3.9  4  PF13371.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.7   0.1      0.062   13.6   0.0    2.2  1  PF07721.9  Tetratricopeptide repeat
      0.018   14.8   0.3      0.018   14.8   0.2    3.1  4  PF13374.1  Tetratricopeptide repeat
      0.069   13.5   0.6       0.49   10.8   0.0    2.4  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.1e-07   0.00011       9      50 ..      33      74 ..      30      81 .. 0.81
   2 !   35.8   0.1   3.9e-12   4.1e-09       3      69 .]      95     165 ..      93     165 .. 0.87
   3 !   20.5   0.0   2.3e-07   0.00024       2      65 ..     133     200 ..     132     210 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.1e-07
   PF13414.1  9 lGnalfkegdydeAieayekAleldpnnaelyynlAlaylkl 50
                lG al+++g+ ++A++ y++Al++ p++ ++      + l l
  MMETSP0890-20130614|5554_1 33 LGDALLERGQTEKALAVYQEALRIKPSYGKAKRKVNETTLLL 74
                8**************************998766555555555 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 3.9e-12
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpn.....naelyynlAlaylklgkdyeeAledyekAleldP 69 
                 ++++ke+Gn++f++g+++eA  +y  A++  ++     +a+l+ n+A+++l    +++ A+ d +k++e+dP
  MMETSP0890-20130614|5554_1  95 PYEAKERGNKHFNAGKFEEAWYEYCIAIDAIEKqgkmpDAKLHTNRAACLLTAH-RWVPAAFDGRKSIEIDP 165
                 6789************************9754423344788***********99.68**************9 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 2.3e-07
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylkl..g.kdyeeAled.yekAl 65 
                 +A+ + +++ +l++++++  A    +k++e+dp+ ++ y   ++a+l +  g k+y  A+++ ++ Al
  MMETSP0890-20130614|5554_1 133 DAKLHTNRAACLLTAHRWVPAAFDGRKSIEIDPEWWKGYWYFGQALLGQlkGkKRYGPAIKEkAQSAL 200
                 5899*****************************************99873323356666554344444 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.4e-08   4.6e-05       6      33 ..      32      59 ..      29      60 .. 0.94
   2 ?    5.6   0.0     0.014        15       6      20 ..     100     114 ..      95     114 .. 0.91
   3 !    8.1   0.0    0.0024       2.5       1      33 [.     134     166 ..     134     167 .. 0.95
   4 ?    0.1   0.3      0.87   9.2e+02      18      28 ..     197     207 ..     193     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.4e-08
                HHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  6 nlGlayyklgdyeeAleafekAleldPn 33
                 lG+a++++g+ e+Al+ +++Al++ P 
  MMETSP0890-20130614|5554_1 32 TLGDALLERGQTEKALAVYQEALRIKPS 59
                69***********************996 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.014
                 HHHHHHHHTT-HHHH CS
  PF07719.12   6 nlGlayyklgdyeeA 20 
                 ++G+ ++++g++eeA
  MMETSP0890-20130614|5554_1 100 ERGNKHFNAGKFEEA 114
                 69************9 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+++ n++ +++ + ++  A+ + +k++e+dP+
  MMETSP0890-20130614|5554_1 134 AKLHTNRAACLLTAHRWVPAAFDGRKSIEIDPE 166
                 68999***************************8 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.87
                 HHHHHHHHHHH CS
  PF07719.12  18 eeAleafekAl 28 
                 + Al+a+e+A 
  MMETSP0890-20130614|5554_1 197 QSALKALERAS 207
                 67999999985 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.5e-08   7.9e-05       7      34 .]      33      60 ..      29      60 .. 0.95
   2 !    6.0   0.1    0.0082       8.6       6      20 ..     100     114 ..      98     114 .. 0.93
   3 !    5.9   0.0    0.0085       8.9       1      33 [.     134     166 ..     134     166 .. 0.93
   4 ?   -1.2   0.1       1.6   1.6e+03      20      27 ..     199     206 ..     194     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 7.5e-08
                HHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  7 lGnaylklgkydeAleyyekALelnPnn 34
                lG a+l+ g+ ++Al+ y++AL++ P++
  MMETSP0890-20130614|5554_1 33 LGDALLERGQTEKALAVYQEALRIKPSY 60
                89************************97 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0082
                 HHHHHHHHTT-HHHH CS
  PF00515.23   6 nlGnaylklgkydeA 20 
                  +Gn +++ gk++eA
  MMETSP0890-20130614|5554_1 100 ERGNKHFNAGKFEEA 114
                 59************9 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                 ak + n+++++l   ++  A  + +k +e++P+
  MMETSP0890-20130614|5554_1 134 AKLHTNRAACLLTAHRWVPAAFDGRKSIEIDPE 166
                 789**************9999999999999995 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 1.6
                 HHHHHHHH CS
  PF00515.23  20 AleyyekA 27 
                 Al++ e+A
  MMETSP0890-20130614|5554_1 199 ALKALERA 206
                 77777777 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.5e-07   0.00026      28      63 ..      24      59 ..      12      60 .. 0.89
   2 ?   -0.2   0.0       1.5   1.6e+03       3      16 ..     101     114 ..     100     114 .. 0.88
   3 ?   -0.6   0.0         2   2.1e+03      21      51 ..     123     154 ..     121     157 .. 0.70
   4 ?    2.7   0.0      0.18   1.9e+02      34      60 ..     171     202 ..     158     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.5e-07
   PF13432.1 28 PeaaeallllaeallrlgrldeAaallraalalaPd 63
                P+++  +  l++all++g+ ++A+a++++al++ P+
  MMETSP0890-20130614|5554_1 24 PRHVPLRITLGDALLERGQTEKALAVYQEALRIKPS 59
                99999999************************9997 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.5
   PF13432.1   3 lArallraGdydeA 16 
                 +++  ++aG+++eA
  MMETSP0890-20130614|5554_1 101 RGNKHFNAGKFEEA 114
                 788999******99 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 2
   PF13432.1  21 eaalala..PeaaeallllaeallrlgrldeAa 51 
                 +a+ ++   P +a  + ++a +ll + r+  Aa
  MMETSP0890-20130614|5554_1 123 DAIEKQGkmP-DAKLHTNRAACLLTAHRWVPAA 154
                 5566666777.7888888888888777766665 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.18
   PF13432.1  34 llllaeallrl....grldeAa.allraalal 60 
                 +++ ++all +    +r+  A+ +  ++al++
  MMETSP0890-20130614|5554_1 171 YWYFGQALLGQlkgkKRYGPAIkEKAQSALKA 202
                 78889999987899999999999999999865 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.2e-08   5.5e-05       3      33 ..      29      59 ..      27      60 .. 0.92
   2 ?   -0.8   0.1       1.4   1.5e+03      16      27 ..     195     206 ..     192     209 .. 0.66

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.2e-08
                -TTT---HHHHTT-HHHHHHHHH---HHHH. CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkpr 33
                +++ lGd++++ G+++kA++ +++al +kp 
  MMETSP0890-20130614|5554_1 29 LRITLGDALLERGQTEKALAVYQEALRIKPS 59
                6788*************************95 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.4
                 -HHHHHHHHH-- CS
   PF13181.1  16 dydkAkeyleka 27 
                 +  +A+++le+a
  MMETSP0890-20130614|5554_1 195 KAQSALKALERA 206
                 445678888777 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.3e-07   0.00077      46      76 ..      27      57 ..       7      80 .. 0.75
   2 ?    1.3   0.0      0.27   2.9e+02      34      66 ..     124     154 ..      99     166 .. 0.51
   3 ?   -0.1   0.0      0.77   8.1e+02      61      72 ..     195     206 ..     192     221 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 7.3e-07
   PF13424.1 46 aralnnlanlylalgdydeAleylekAleia 76
                + +   l++++l++g+ ++Al+ +++Al+i 
  MMETSP0890-20130614|5554_1 27 VPLRITLGDALLERGQTEKALAVYQEALRIK 57
                5566778888888888888888888888875 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.27
   PF13424.1  34 llrelgddhpdtaralnnlanlylalgdydeAl 66 
                  ++++g   pd a++ +n a ++l + +   A 
  MMETSP0890-20130614|5554_1 124 AIEKQG-KMPD-AKLHTNRAACLLTAHRWVPAA 154
                 455555.3345.555555555555555555555 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.77
   PF13424.1  61 dydeAleylekA 72 
                 + ++Al+ le+A
  MMETSP0890-20130614|5554_1 195 KAQSALKALERA 206
                 556677777776 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00047       0.5       9      33 ..      23      47 ..      18      48 .. 0.91
   2 ?   -0.1   0.0       1.2   1.2e+03       2      12 ..      50      60 ..      49      63 .. 0.84
   3 ?   -0.4   0.0       1.5   1.6e+03      10      32 ..      90     114 ..      83     116 .. 0.70
   4 ?    0.6   0.0      0.73   7.7e+02      12      28 ..     133     149 ..     122     151 .. 0.80
   5 ?    4.4   0.0     0.045        48       3      25 ..     158     182 ..     158     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00047
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                 P +++++  L+ +ll++G++e+A+
  MMETSP0890-20130614|5554_1 23 KPRHVPLRITLGDALLERGQTEKAL 47
                59999*******************7 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.2
   PF13431.1  2 yekaleldPnn 12
                y++al++ P +
  MMETSP0890-20130614|5554_1 50 YQEALRIKPSY 60
                9*******987 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.5
   PF13431.1  10 Pnnadayn..nLAelllnnGdleeA 32 
                 P++ d y   ++++ ++n+G++eeA
  MMETSP0890-20130614|5554_1  90 PEDCDPYEakERGNKHFNAGKFEEA 114
                 6666666666677778899999988 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.73
   PF13431.1  12 nadaynnLAelllnnGd 28 
                 +a +++n+A +ll + +
  MMETSP0890-20130614|5554_1 133 DAKLHTNRAACLLTAHR 149
                 79999****99997765 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.045
   PF13431.1   3 ekaleldPnnadaynnLAelll..n 25 
                 +k++e+dP+ +  y +++++ll   
  MMETSP0890-20130614|5554_1 158 RKSIEIDPEWWKGYWYFGQALLgqL 182
                 69********999988888887554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-06    0.0025       4      33 ..      30      59 ..      27      65 .. 0.88
   2 ?   -2.3   0.0       8.7   9.2e+03      11      20 ..     105     114 ..      99     119 .. 0.71
   3 ?   -1.3   0.0       4.2   4.4e+03       4      33 ..     137     166 ..     134     181 .. 0.71
   4 ?    1.0   0.1      0.79   8.4e+02      18      34 ..     197     215 ..     193     227 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.3e-06
   PF13428.1  4 llalarallalGdpdeAiallrralalaPd 33
                +  l++all++G++++A+a++++al+  P+
  MMETSP0890-20130614|5554_1 30 RITLGDALLERGQTEKALAVYQEALRIKPS 59
                6689*********************98886 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 8.7
   PF13428.1  11 llalGdpdeA 20 
                 ++++G ++eA
  MMETSP0890-20130614|5554_1 105 HFNAGKFEEA 114
                 5677777776 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 4.2
   PF13428.1   4 llalarallalGdpdeAiallrralalaPd 33 
                 +  +a+ ll ++++  A+   r+ ++ +P+
  MMETSP0890-20130614|5554_1 137 HTNRAACLLTAHRWVPAAFDGRKSIEIDPE 166
                 556778888888888877767777777776 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.79
   PF13428.1  18 deAiallrra..lalaPdd 34 
                 + A+++l+ra  ++ +P+d
  MMETSP0890-20130614|5554_1 197 QSALKALERAseCQGFPED 215
                 6799999999333345665 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.1e-05     0.012       5      30 ..      33      58 ..      30      64 .. 0.86
   2 ?   -2.1   0.0       3.9   4.2e+03       9      18 ..     105     114 ..     105     114 .. 0.88
   3 ?   -2.1   0.0         4   4.2e+03      17      26 ..     198     207 ..     195     217 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-05
   PF13176.1  5 LarlysrlgdyekAielyeraLaltk 30
                L+++  ++g++ekA+ +y++aL+++ 
  MMETSP0890-20130614|5554_1 33 LGDALLERGQTEKALAVYQEALRIKP 58
                9*******************777665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.9
   PF13176.1   9 ysrlgdyekA 18 
                 +++ g++e+A
  MMETSP0890-20130614|5554_1 105 HFNAGKFEEA 114
                 7889****98 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 4
   PF13176.1  17 kAielyeraL 26 
                  A++++era 
  MMETSP0890-20130614|5554_1 198 SALKALERAS 207
                 5777788754 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        14       4      26 ..      36      58 ..      21      68 .. 0.68
   2 ?    2.7   0.0     0.097     1e+02      28      49 ..      94     115 ..      87     128 .. 0.86
   3 ?    0.1   0.0      0.62   6.5e+02      28      60 ..     133     165 ..     117     167 .. 0.84
   4 ?    1.6   0.0      0.22   2.3e+02       9      31 ..     194     218 ..     191     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.013
   PF13371.1  4 iylreedferALavverllllaP 26
                ++l+++++e+ALav++  l+++P
  MMETSP0890-20130614|5554_1 36 ALLERGQTEKALAVYQEALRIKP 58
                45666666666666666666665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.097
   PF13371.1  28 dpyerRDrGlllaqlgclaaAa 49 
                 dpye  +rG  ++  g +++A 
  MMETSP0890-20130614|5554_1  94 DPYEAKERGNKHFNAGKFEEAW 115
                 9******************996 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.62
   PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                 d+ ++  r+ +l    ++  Aa d +  +e +p
  MMETSP0890-20130614|5554_1 133 DAKLHTNRAACLLTAHRWVPAAFDGRKSIEIDP 165
                 67788899****999999999999777777666 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.22
   PF13371.1   9 edferALavverllll..aPddpye 31 
                 e+ ++AL+++er  ++   P+d +e
  MMETSP0890-20130614|5554_1 194 EKAQSALKALERASECqgFPEDKRE 218
                 6788999999999888555665555 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.9e-05     0.062       3      25 ..      29      51 ..      27      52 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.9e-05
                HH---HHHHHH-------HHHHH CS
   PF07721.9  3 allaLArallalGdldeAralle 25
                +++ L+ all++G+ + A+a+ +
  MMETSP0890-20130614|5554_1 29 LRITLGDALLERGQTEKALAVYQ 51
                5899****************976 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.6         2   2.1e+03      19      34 ..       4      19 ..       3      26 .. 0.82
   2 ?   14.8   0.2   1.7e-05     0.018       7      31 ..      32      56 ..      30      57 .. 0.93
   3 ?   -2.1   0.0       3.4   3.6e+03      35      41 ..      73      79 ..      66      80 .. 0.83
   4 ?   -3.1   0.0         7   7.3e+03      12      21 ..     105     114 ..     105     115 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2
   PF13374.1 19 eeAlaleeealairrr 34
                ee ++ +ee++ ir++
  MMETSP0890-20130614|5554_1  4 EEEEEEDEEIRKIREE 19
                67888899******97 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.7e-05
   PF13374.1  7 nLAlalrargryeeAlaleeealai 31
                +L+ al +rg++e+Ala ++eal i
  MMETSP0890-20130614|5554_1 32 TLGDALLERGQTEKALAVYQEALRI 56
                7999*******************98 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 3.4
   PF13374.1 35 llGddHP 41
                llG dH 
  MMETSP0890-20130614|5554_1 73 LLGKDHR 79
                69***96 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 7
   PF13374.1  12 lrargryeeA 21 
                 +++ g++eeA
  MMETSP0890-20130614|5554_1 105 HFNAGKFEEA 114
                 6889999998 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00047      0.49       6      28 ..      33      55 ..      32      58 .. 0.89
   2 ?   -0.2   0.0       1.5   1.6e+03      15      25 ..     195     205 ..     168     208 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00047
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                l+ ++++ g+t++Al+++++ ++
  MMETSP0890-20130614|5554_1 33 LGDALLERGQTEKALAVYQEALR 55
                789999988**********9886 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.5
                 HHHHHHHHHHH CS
   PF13174.1  15 dtdeAlealer 25 
                 +++ Al+aler
  MMETSP0890-20130614|5554_1 195 KAQSALKALER 205
                 55667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.72
# Mc/sec: 808.77
//
Query:       MMETSP0890-20130614|5556_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-35  120.3   0.2    1.2e-25   89.3   0.0    3.1  3  PF13905.1  Thioredoxin-like
    1.5e-12   47.5   0.1      7e-07   29.3   0.0    2.8  3  PF13098.1  Thioredoxin-like domain
    1.9e-12   46.6   0.1    4.4e-07   29.4   0.1    3.7  4  PF00085.15 Thioredoxin
    2.5e-05   23.8   0.1    0.00014   21.3   0.0    2.2  3  PF00578.16 AhpC/TSA family
    4.6e-05   22.8   0.2    0.00048   19.5   0.0    2.6  3  PF08534.5  Redoxin
    0.00024   20.9   0.0       0.06   13.2   0.0    3.5  3  PF13899.1  Thioredoxin-like
  ------ inclusion threshold ------
      0.014   14.7   0.1       0.92    8.8   0.0    2.8  3  PF13728.1  F plasmid transfer operon protein
      0.066   12.5   0.1        5.7    6.2   0.0    2.6  3  PF06110.6  Eukaryotic protein of unknown function (DUF953)
        0.1   12.0   0.6       0.16   11.4   0.0    1.5  2  PF02630.9  SCO1/SenC


Domain annotation for each model (and alignments):
>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     2e-09   3.1e-06      61      96 .]       2      39 ..       1      39 [. 0.94
   2 !   89.3   0.0   7.7e-29   1.2e-25       4      92 ..      92     180 ..      90     182 .. 0.96
   3 ?   -1.7   0.0       1.9   2.9e+03       4      26 ..     266     288 ..     263     292 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2e-09
   PF13905.1 61 pwlavpfndkr.rnklkklykvkaiPtlvvld.kdgev 96
                pwla+pf++ + ++ l k+ykvk+iPtl++ld k+ge+
  MMETSP0890-20130614|5556_1  2 PWLALPFENRQaKKNLSKKYKVKGIPTLILLDaKSGEI 39
                9********98799******************999987 PP

  == domain 2    score: 89.3 bits;  conditional E-value: 7.7e-29
   PF13905.1   4 vllyfaaswcppckaftpelkelyeklkaskdkveivyVsldrdeeefkkylkknkkpwlavpfndkr.rnklkklykvkaiPtlvvldk 92 
                 +llyf+a+wcppc++ftp+l ++ye++k +++++ei++ s+drd+e+f++y +k ++ w+a+pfndk+ +++l +++++ +iP+l+ l++
  MMETSP0890-20130614|5556_1  92 LLLYFSAHWCPPCRNFTPVLSQWYEENK-TTKDLEIIFCSSDRDQEAFNEYYNKFMPSWTALPFNDKTtKDALSQAFEIRGIPSLIALGP 180
                 69*************************9.7*************************************8678***************9986 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.9
   PF13905.1   4 vllyfaaswcppckaftpelkel 26 
                 +l++f++ + +p ++  + lk  
  MMETSP0890-20130614|5556_1 266 ILVFFSTKNEGPAMRLRQLLKSA 288
                 68999999999999988888865 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05     0.021      69     100 ..      12      43 ..       2      50 .. 0.78
   2 !   29.3   0.0   4.6e-10     7e-07       7      90 ..      91     179 ..      87     187 .. 0.77
   3 ?   -1.4   0.0       1.5   2.4e+03      45      78 ..     217     260 ..     206     287 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
   PF13098.1  69 leekelgrklgvrgtPtivfldge.Gklvarlp 100
                   +k+l +k++v+g Pt+++ld++ G+++  ++
  MMETSP0890-20130614|5556_1  12 QAKKNLSKKYKVKGIPTLILLDAKsGEII-TVN 43 
                 46899*****************7625554.455 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 4.6e-10
   PF13098.1   7 rvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskersea........vld..kdgekevkleekelgrklgvrgtPtivfld 90 
                  ++++f++ +Cp C+ + + l +  +  k + ++ e+i+++ d+++e+  +        +++  ++     k+++++l +++ +rg P+++ l 
  MMETSP0890-20130614|5556_1  91 NLLLYFSAHWCPPCRNFTPVLSQWYEENKTT-KDLEIIFCSSDRDQEAFNEyynkfmpsWTAlpFND----KTTKDALSQAFEIRGIPSLIALG 179
                 5789*****************9876655555.599*******9888654444444444455476444....36889**************9874 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.5
   PF13098.1  45 yvnidkskersea..........vldkdgekevkleekelgrkl 78 
                 +v++d+++++  +          v+d + ++    + k+++++ 
  MMETSP0890-20130614|5556_1 217 SVAVDCKESDINEttsllllldhVTDTSAQQHAVQTAKDFAQRH 260
                 56666666555442333333333444555555555666666654 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00029      0.45      59      83 ..      12      36 ..       9      53 .. 0.79
   2 !   29.4   0.1   2.9e-10   4.4e-07      11      78 ..      83     151 ..      75     160 .. 0.75
   3 ?    2.1   0.0     0.089   1.4e+02      57      79 ..     156     178 ..     154     186 .. 0.85
   4 ?   -0.6   0.0      0.63   9.6e+02       4      53 ..     250     297 ..     247     305 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00029
                TTTHHHHHHTT--SSSEEEEESSSS CS
  PF00085.15 59 denkdlaseygvegiPtlklfkngk 83
                +++k+l+++y+v+giPtl+l+ + +
  MMETSP0890-20130614|5556_1 12 QAKKNLSKKYKVKGIPTLILLDAKS 36
                56789**************987643 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.9e-10
                 HHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-..TSEEEEEETTTTHHHHHHTT--SSSEEEE CS
  PF00085.15  11 eeevaksdklvlvefyApwCGhCkalaPeyeklaeelke..kvvlakvdvdenkdlaseygvegiPtlkl 78 
                  + ++  ++++l+ f A+wC +C+++ P++ +  ee k+  ++ ++ +  d  ++  +ey  + +P    
  MMETSP0890-20130614|5556_1  83 AQIIK-PTSNLLLYFSAHWCPPCRNFTPVLSQWYEENKTtkDLEIIFCSSDRDQEAFNEYYNKFMPSWTA 151
                 44454.4999**********************99998888855555555555566777877777776655 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.089
                 ETTTTHHHHHHTT--SSSEEEEE CS
  PF00085.15  57 dvdenkdlaseygvegiPtlklf 79 
                 d ++++ l++ ++++giP l+ +
  MMETSP0890-20130614|5556_1 156 DKTTKDALSQAFEIRGIPSLIAL 178
                 66788899**********99765 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.63
                 ESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEE CS
  PF00085.15   4 vltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvl 53 
                 v t++ f +  a+ + ++lv f ++  G+  +l   ++++ ++   k  l
  MMETSP0890-20130614|5556_1 250 VQTAKDFAQRHAN-NPDILVFFSTKNEGPAMRLRQLLKSARNDPV-KAFL 297
                 5678889999999.9999999999888887777777777766655.4455 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   1.7e+03      91     118 ..      14      35 ..      11      41 .. 0.79
   2 !   21.3   0.0   9.4e-08   0.00014      27      76 ..      91     138 ..      71     175 .. 0.80
   3 ?   -2.2   0.0       1.8   2.7e+03      24      39 ..     261     276 ..     238     323 .. 0.59

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
  PF00578.16  91 egevakaygvlneekglalratfvidke 118
                 +++++k+y+v        +++++++d +
  MMETSP0890-20130614|5556_1  14 KKNLSKKYKVK------GIPTLILLDAK 35 
                 67889999999......88888888876 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 9.4e-08
  PF00578.16  27 pvvLffypkdfcpvCttelpalaelyeefk.kkgvevigvsvdspeshkkf 76 
                  ++L+f ++ +cp+C++  p l++ yee k  k++e+i +s+d  +  ++f
  MMETSP0890-20130614|5556_1  91 NLLLYFSAH-WCPPCRNFTPVLSQWYEENKtTKDLEIIFCSSDRDQ--EAF 138
                 467888888.*******************9678*********9877..344 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.8
  PF00578.16  24 kgkpvvLffypkdfcp 39 
                 +++p +L+f+++++  
  MMETSP0890-20130614|5556_1 261 ANNPDILVFFSTKNEG 276
                 3455566666664433 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   1.6e+03      96     124 ..      16      35 ..      11      47 .. 0.64
   2 !   19.5   0.0   3.2e-07   0.00048      27      76 ..      88     138 ..      62     177 .. 0.77
   3 ?   -0.7   0.0      0.54   8.1e+02      44      77 ..     244     279 ..     199     312 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.1
                 -HHHHHT..-EE------EE--EEEEEE- CS
   PF08534.5  96 sfakalglrltedasagirtpryavided 124
                 +++k+++++         ++p+++++d++
  MMETSP0890-20130614|5556_1  16 NLSKKYKVK---------GIPTLILLDAK 35 
                 455666655.........66666666655 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 3.2e-07
                 TTSEEEEE---------IIIIIHHHHTH.HHH.HH----EEEEE-SS-HH.H CS
   PF08534.5  27 kgkkvvlvfvpgafcptCsaehpylekl.aklakekgvdvvavvaqndaf.v 76 
                 ++ +++l+f +  +cp+C++ +p l +  ++ +  k+ ++++++++ d+   
  MMETSP0890-20130614|5556_1  88 PTSNLLLYFSAH-WCPPCRNFTPVLSQWyEENKTTKDLEIIFCSSDRDQEaF 138
                 566789999999.**********999997888999***********998753 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.54
                 IIIIIH..HHHTHHHH.HH----EEEEE-SS-HHHH CS
   PF08534.5  44 Csaehp..yleklaklakekgvdvvavvaqndafvk 77 
                   ++h     +++a++++++    v+ +++n+ +++
  MMETSP0890-20130614|5556_1 244 SAQQHAvqTAKDFAQRHANNPDILVFFSTKNEGPAM 279
                 455665555666777766666666777777777644 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.11   1.7e+02      61      82 .]      11      34 ..       3      34 .. 0.69
   2 !   13.2   0.0     4e-05      0.06      13      38 ..      85     110 ..      76     180 .. 0.82
   3 ?    1.0   0.0      0.25   3.8e+02       8      39 ..     254     285 ..     247     298 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.11
   PF13899.1 61 terdanleldr..qgvPvvvfldp 82
                 + ++nl+ +   +g+P++++ld+
  MMETSP0890-20130614|5556_1 11 RQAKKNLSKKYkvKGIPTLILLDA 34
                455667754445688*******96 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 4e-05
   PF13899.1  13 areegkpllvifgadwcpdCqaldrd 38 
                   +    ll++f a wcp+C+ +  +
  MMETSP0890-20130614|5556_1  85 IIKPTSNLLLYFSAHWCPPCRNFTPV 110
                 55566789*************98654 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.25
   PF13899.1   8 ealakareegkpllvifgadwcpdCqaldrdv 39 
                 +++a+ ++++  +lv+f  ++ ++ ++l + +
  MMETSP0890-20130614|5556_1 254 KDFAQRHANNPDILVFFSTKNEGPAMRLRQLL 285
                 56789999999******988888887777665 PP

>> PF13728.1  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00061      0.92     166     208 ..       8      52 ..       5      53 .. 0.84
   2 ?    2.6   0.0     0.048        73     124     149 ..      93     118 ..      85     144 .. 0.76
   3 ?   -2.6   0.0       1.9   2.8e+03      62     118 ..     245     260 ..     237     276 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00061
   PF13728.1 166 lpnsrkdtgqaqklgvkttPalvlvdpktkkvkpva..yGfisqd 208
                 ++n +  +++++k +vk +P+l+l d k++++++v    G+is d
  MMETSP0890-20130614|5556_1   8 FENRQAKKNLSKKYKVKGIPTLILLDAKSGEIITVNgrDGVISND 52 
                 6677789999***********************996335777765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.048
   PF13728.1 124 lfffyrsdcpycealapilqafaeky 149
                 l++f  + cp c+++ p+l++  e+ 
  MMETSP0890-20130614|5556_1  93 LLYFSAHWCPPCRNFTPVLSQWYEEN 118
                 7899999***********99876554 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.9
   PF13728.1  62 lqkvildkaskFadvwqrvllqnPeLdynlrrpvsnaarqalleqkkqkkekalkkl 118
                 +q+ +++ a++Fa+                                          +
  MMETSP0890-20130614|5556_1 245 AQQHAVQTAKDFAQR-----------------------------------------H 260
                 334444444444443.........................................3 PP

>> PF06110.6  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.03        46      83      98 ..      19      34 ..       9      41 .. 0.80
   2 ?    6.2   0.0    0.0038       5.7      36      66 ..      99     131 ..      94     152 .. 0.79
   3 ?   -4.1   0.0       5.9     9e+03      84      96 ..     166     178 ..     161     181 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.03
                .CC---SSSEEEEE-- CS
   PF06110.6 83 pklkltavPtLlrwkg 98
                 k+k++++PtL+  + 
  MMETSP0890-20130614|5556_1 19 KKYKVKGIPTLILLDA 34
                589********98776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0038
                 BSSHHHHHHHHHHH---TT..-SS-EEEEEEE- CS
   PF06110.6  36 sWCPdCvkaepvieealke..apedvklirvdv 66 
                  WCP C +  pv+ +  +e   ++d ++i +  
  MMETSP0890-20130614|5556_1  99 HWCPPCRNFTPVLSQWYEEnkTTKDLEIIFCSS 131
                 5**************998755677999998865 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 5.9
                 CC---SSSEEEEE CS
   PF06110.6  84 klkltavPtLlrw 96 
                  +++ ++P L+  
  MMETSP0890-20130614|5556_1 166 AFEIRGIPSLIAL 178
                 5789999*99965 PP

>> PF02630.9  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       6.3   9.5e+03     125     137 ..      12      24 ..       8      25 .. 0.73
   2 ?   11.4   0.0   0.00011      0.16      56     132 ..      93     164 ..      86     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6.3
                 ---HHHHHHHHHH CS
   PF02630.9 125 eeikevakkfkvf 137
                 +  k++ kk+kv+
  MMETSP0890-20130614|5556_1  12 QAKKNLSKKYKVK 24 
                 4567888999985 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00011
                 EEEEE-SSSSSS-SSTHHHHHHHHHHHHHTTTT-EEEEEESSTTTS-HHHHHHHHTTST--GGGEEEEB---HHHHH CS
   PF02630.9  56 liyFgftncpdicpealekltdllkkLkeekidvqvvfisvDPerDtpevlkeylknfdesfigltgtveeikevak 132
                 l+yF    cp  c + + +l ++ ++ k   +d++++f s D  rD+ e   ey ++f +s   l ++ +  k++  
  MMETSP0890-20130614|5556_1  93 LLYFSAHWCP-PCRNFTPVLSQWYEENK-TTKDLEIIFCSSD--RDQ-EAFNEYYNKFMPSWTALPFNDKTTKDALS 164
                 899**99**6.59999*******99854.478******9998..665.6799****************999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.93
# Mc/sec: 873.51
//
Query:       MMETSP0890-20130614|5560_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.45s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 357.61
//
Query:       MMETSP0890-20130614|5561_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-10   39.6   4.6    2.4e-10   39.6   3.2    1.8  2  PF05151.7 Photosystem II reaction centre M protein (PsbM)
  ------ inclusion threshold ------
        1.1    9.2   4.0        2.1    8.3   2.8    1.6  1  PF14342.1 Domain of unknown function (DUF4396)


Domain annotation for each model (and alignments):
>> PF05151.7  Photosystem II reaction centre M protein (PsbM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.39   2.7e+03      12      14 ..      14      16 ..       7      22 .. 0.55
   2 !   39.6   3.2   3.5e-14   2.4e-10       2      30 ..      67      95 ..      66      96 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.39
                HHH CS
   PF05151.7 12 lLF 14
                lLF
  MMETSP0890-20130614|5561_1 14 LLF 16
                444 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 3.5e-14
                -------HHHHHHHHHHHHHHHHHHHHHH CS
   PF05151.7  2 EVNiLgFiAtlLFilvPtvFLliLYvqTs 30
                EV++++F+A+lL++++P+ FL++LY+q++
  MMETSP0890-20130614|5561_1 67 EVTTAAFLAVLLGTFFPVFFLITLYIQSE 95
                9**************************97 PP

>> PF14342.1  Domain of unknown function (DUF4396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8    0.0003       2.1       8     125 ..       8      83 ..       1     101 [. 0.51

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0003
   PF14342.1   8 satlhClagcaigdilgmwilta...............................tllglsmlaemilavalafllgllletallremkglslgealkeAlkadtlSmlameigmnlvmllltfagaleledllfWfamqlallvGflta 125
                 +atl Cl + a+  ++ m+ +t+                               +                                                                         l +l + +a+ la+l+G +++
  MMETSP0890-20130614|5561_1   8 IATLVCLLFAAVNAFAPMPSTTSsavrsarsapvvsmtplevapamdvvsqlptQ-------------------------------------------------------------------------LVSLEVTTAAFLAVLLGTFFP 83 
                 4455555555555555555555555554444444444444444444444444444.........................................................................455555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 364.66
//
Query:       MMETSP0890-20130614|5557_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   31.2   0.0    2.1e-07   30.5   0.0    1.4  1  PF00168.25 C2 domain
     0.0001   21.7   0.1    0.00024   20.6   0.1    1.6  1  PF01839.18 FG-GAP repeat
     0.0077   16.4   0.0      0.016   15.4   0.0    1.7  1  PF13517.1  Family description
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.034   13.9   0.0    1.7  1  PF01556.13 DnaJ C terminal domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   6.2e-11   2.1e-07       1      82 [.       9      92 ..       9      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6.2e-11
                EEEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-.SSEEEEEEEEEE.ESCGGGTE.EEEEEEECHSSSC.SEE-- CS
  PF00168.25  1 LkvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrviknt.lnPvWnekftfe.vvaeelae.leleVkdedrfgk.ddflG 82
                L ++ ie+++L n d   + dpyv+ ++g+ k+   +Tr ++    + v+ +k+++  ++++el+  + +  +d+d+    dd+lG
  MMETSP0890-20130614|5557_1  9 LVISNIECHGLRNADFLTKNDPYVVFKIGNVKK--VKTRYKSGAgRDVVFPDKLEIAmISDAELEAgIDVNAWDYDVGPDpDDLLG 92
                568889************************555..**********************9999999999*********9887788888 PP

>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     7e-08   0.00024       4      27 ..     271     292 ..     268     303 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 7e-08
                 CEEEE.-TT---S-EEEEETEECTC CS
  PF01839.18   4 svavg.DfnGDGrpDlavGpmgggh 27 
                 +v+++ D++GDGrpD +v   +++ 
  MMETSP0890-20130614|5557_1 271 AVGTAvDIDGDGRPDYYV---PHAA 292
                 677777***********9...4555 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.7e-06     0.016      46      61 .]     273     288 ..     213     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.7e-06
   PF13517.1  46 vafgDldgDGdlDllv 61 
                  +++D+dgDG++D++v
  MMETSP0890-20130614|5557_1 273 GTAVDIDGDGRPDYYV 288
                 4799**********97 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.034      12      46 ..     206     240 ..     201     241 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1e-05
  PF01556.13  12 eAllGgtvevptldgrkikvkippgtkpgeklrik 46 
                 +A  G +v+v+ ++g++++v ip+g++pg ++r++
  MMETSP0890-20130614|5557_1 206 NARGGSQVVVQAPSGERLTVLIPQGVQPGGQFRVP 240
                 6778999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:01.04
# Mc/sec: 806.47
//
Query:       MMETSP0890-20130614|5564_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.80
# Mc/sec: 152.77
//
Query:       MMETSP0890-20130614|5567_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 595.22
//
Query:       MMETSP0890-20130614|5566_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   50.9   0.0    4.4e-13   49.1   0.0    1.8  2  PF12695.2  Alpha/beta hydrolase family
    3.8e-10   39.9   0.4    8.5e-10   38.7   0.3    1.5  1  PF12697.2  Alpha/beta hydrolase family
    1.3e-08   34.4   0.0    2.9e-08   33.3   0.0    1.5  1  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
    1.8e-08   33.7   0.1      1e-07   31.2   0.0    2.2  2  PF00326.16 Prolyl oligopeptidase family
    3.7e-05   23.2   2.8    0.00011   21.6   0.9    2.1  2  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.017   14.1   0.0      0.041   12.8   0.0    1.5  1  PF06028.6  Alpha/beta hydrolase of unknown function (DUF915)
      0.074   12.3   0.1       0.18   11.0   0.0    1.6  2  PF00756.15 Putative esterase
       0.13   12.0   0.0       0.29   10.9   0.0    1.5  1  PF12146.3  Putative lysophospholipase


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   1.8e+03      82     115 ..      88     124 ..      48     143 .. 0.78
   2 !   49.1   0.0   2.6e-16   4.4e-13       1     137 [.     356     549 ..     356     553 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
   PF12695.2  82 vkglvllap...fpdgedlakltlpvllihGtrDgvv 115
                 +kg + l+    + d  +l+k + pvl i G + + +
  MMETSP0890-20130614|5566_1  88 IKGNIGLGQahiHSDVRTLKKEKTPVLEIVGPKAQHT 124
                 5666666655445667899999999999999876655 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 2.6e-16
   PF12695.2   1 lvvlvhGaggdssayeplaealakrgfavvavdlpghgasegaa......aakrvl.....aadlldleriilvGhSlGGgvalelagrd.drvkglvllapf..................pdgedlakltl...........................pvllihGtrDgvvppeeaeklakalpgdaelvvie 137
                 +++++hG+++ + +  +        g+av a+d  g+g+s+g+       +a++v+      +++  + +++l+G+S+G+ ++l+++++  ++++ +++ +pf                  pdg++l ++++                           p l+ihG +D+++ p++ +++aka++g++++   +
  MMETSP0890-20130614|5566_1 356 VIIYLHGNASCRLEALSALSLCLGLGCAVCAIDCAGSGQSDGEFvslgyyEADDVVavvdyLKSQYAMTKYALWGRSMGAVTSLLFVSEKaPDAACVIADSPFasikrlcydlvhkaakrvPDGATLLAVRKirrsvkyragfdiykcnpqlhvnaaapPGLIIHGRDDDFILPTHTDAIAKAYGGKVQVSKPP 549
                 699******9999888888888889***************77777777774444443334425555899*******************99999999999999766666666777777777788887777777999**************************************************998876555 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.3     5e-13   8.5e-10       1     215 [.     357     552 ..     357     555 .. 0.69

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 5e-13
                 EEE------------HHHHHH.TTTSEEEEE-----------S....S--HHHHHHHHHHHHHH--.....--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTT.EEEEE---SSS CS
   PF12697.2   1 vvllHGlggsaeswrplaeaL.aagyrvvapDlpGhGrSdrppd.ydpdtledlaadlaalldalgl....rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpg.arvvvlpgagH 215
                 ++ lHG+ +   +  + +++    g+ v a+D  G G+Sd+     +++     a+d++a++d l      +++ l+G S+G++++l+++++   + + +++ +p+++           +l  +l++  a++  d a+     l++ +  ++ v+  ++a  ++++    ++ l  ++ +   P l+i+g++D+++ p + +++a+a +g ++v   p ++H
  MMETSP0890-20130614|5566_1 357 IIYLHGNASCRLEALSALSLClGLGCAVCAIDCAGSGQSDGEFVsLGYY----EADDVVAVVDYLKSqyamTKYALWGRSMGAVTSLLFVSEKAPDAACVIADSPFASIK---------RLCYDLVHKAAKRVPDGAT-----LLAVRKIRRSVK--YRAGFDIYK---CNPQL--HVNAAAPPGLIIHGRDDDFILPTHTDAIAKAYGGkVQVSKPP-GNH 552
                 678999999998888888866358*****************77324444....3789999999999888889******************99777899999999999322.........2333333332222222221.....222333333333..334444444...33444..4445579**************999999999976515666555.666 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.7e-11   2.9e-08      52     139 ..     370     462 ..     333     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.7e-11
                 H......HHC---EEEEEE----TT------TTTCCHHHHHHHHHHHHHHCTTBE-EEEE---TT---HHHHHTTS--TTB-EBEEBSB-SBCH CS
  PF02129.13  52 a......fvarGYavVvvdvrGtgaSeGeftvgsedevedgadvidWlakqpwsnGkVGmtGiSYdGttqlaaaatgvpalkaivpesaisdly 139
                 a      ++  G av   d+ G+g+S+Gef++ ++ e++d+++v+d l+ q   + k + +G S +++t+l+  +++ p  +++++ s+ ++  
  MMETSP0890-20130614|5566_1 370 AlsalslCLGLGCAVCAIDCAGSGQSDGEFVSLGYYEADDVVAVVDYLKSQYAMT-KYALWGRSMGAVTSLLFVSEKAPDAACVIADSPFASIK 462
                 0555555777899999*********************************996665.89*****************************9988765 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.69   1.2e+03     168     195 ..     104     131 ..      96     152 .. 0.57
   2 !   31.2   0.0   6.1e-11     1e-07       9     168 ..     376     537 ..     370     545 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.69
                 HHHH..--SEEEEEES---------HHH CS
  PF00326.16 168 aaLqkagknvlllifpdegHgigkprak 195
                 ++L+k++++vl ++ p+++H +  ++ k
  MMETSP0890-20130614|5566_1 104 RTLKKEKTPVLEIVGPKAQHTLLFQSLK 131
                 4555555556666666666643333322 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 6.1e-11
                 HHHH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-...---GGGGT---TTS.........HHH.HHHHHHH-GGG---.----EEEEEETT-SSS-THHHHHHHH CS
  PF00326.16   9 lladrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsl.lteaeymeygnpee.........neegyeelspyspadnvk.aypplllihGeeDdrvppaealklva 168
                 l+  +G +v++++  Gsg+   ++       lg +e+dD++a++++l++++     + a++G S G ++++  + ++    ++++a ++++   +  +d  +   ++++ +  +             ++g+ ++ + +p  +v+ a pp l+ihG  Dd + p ++  +++
  MMETSP0890-20130614|5566_1 376 LCLGLGCAVCAIDCAGSGQSDGEFVS-----LGYYEADDVVAVVDYLKSQY--AMTKYALWGRSMGAVTSLLFVSEKAPDAACVIADSPFASIKRLCYDLVHkA-AKRVPDGATLLAvrkirrsvkYRAGF-DIYKCNPQLHVNaAAPPGLIIHGRDDDFILPTHTDAIAK 537
                 55578999**********99999998.....9999************9995..55789*****************888888**********9998877733332.22444443333222221111133344.3444444444448****************9999977665 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.9   6.7e-08   0.00011       3      79 ..     384     459 ..     382     512 .. 0.84
   2 ?   -0.0   0.0      0.28   4.7e+02     177     216 ..     515     554 ..     512     572 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.7e-08
                 EEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB-- CS
  PF00561.15   3 viglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtva 79 
                 v+++D  G+g+S+   +  l  y  dd+++ ++++  +   +k++l+G SmG+ ++l + +e     + +++++++a
  MMETSP0890-20130614|5566_1 384 VCAIDCAGSGQSDG-EFVSLGYYEADDVVAVVDYLKSQYAMTKYALWGRSMGAVTSLLFVSEKAPDAACVIADSPFA 459
                 899**********5.38*****************************************9988877788888888865 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.28
                 SEEEEECCTTSCCHHCHHHHHHHCSTT.EEEEEETTHHCSH CS
  PF00561.15 177 ptlvisgtdDplvpykaseklaelipk.sqlvvidgpgHla 216
                 p l+i+g+dD ++ + +  ++a++ +  +q+ + +g  H a
  MMETSP0890-20130614|5566_1 515 PGLIIHGRDDDFILPTHTDAIAKAYGGkVQVSKPPG-NHNA 554
                 789*********999999997666554367777777.7765 PP

>> PF06028.6  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.041      90     127 ..     411     448 ..     405     467 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.4e-05
   PF06028.6  90 kkvlseLkkkYnikkvnlvGhSmGglaltsYledyand 127
                  +v+++Lk++Y+++k  l G SmG+++ + ++ + a d
  MMETSP0890-20130614|5566_1 411 VAVVDYLKSQYAMTKYALWGRSMGAVTSLLFVSEKAPD 448
                 579**************************999988776 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         4   6.8e+03     171     215 ..     183     227 ..     180     238 .. 0.69
   2 ?   11.0   0.0    0.0001      0.18     103     153 ..     414     462 ..     408     499 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4
                 CCCCCGTTTTT-EEEEEEE-----TTTTTTHHCHHHHHHCCCCCC CS
  PF00756.15 171 vllakelsaslkalriyldvGtseddlgeqlsveilevlarnrel 215
                 ++ + ++++ l++l+i l v ++e+d+++ ++++    l++ r+ 
  MMETSP0890-20130614|5566_1 183 WVAILQSQQLLRKLDIELGVEEDEEDAQDYDEMDDPNALTPRRAG 227
                 556666777888888888888888888887777776666666554 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0001
                 HHHHHHHH-B----EEEE--THHHHHHHHHHHH-TTT-SEEEEES----TT CS
  PF00756.15 103 lplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnps 153
                 +++l++++  ++   a++G SmG++++L+  ++     ++v++ Sp+++  
  MMETSP0890-20130614|5566_1 414 VDYLKSQYAMTKY--ALWGRSMGAVTSLLFVSEKAPDAACVIADSPFASIK 462
                 6777777777777..**************9999555557999999998766 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.29      41      67 ..     379     405 ..     349     416 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
   PF12146.3  41 aqGyavyayDhrGhGksegerghvpsf 67 
                   G av+a+D  G G+s+ge   +  +
  MMETSP0890-20130614|5566_1 379 GLGCAVCAIDCAGSGQSDGEFVSLGYY 405
                 4799**************987655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:01.12
# Mc/sec: 1478.11
//
Query:       MMETSP0890-20130614|5570_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-19   68.6   0.0    5.9e-19   67.7   0.0    1.5  1  PF08542.6  Replication factor C C-terminal domain
    2.1e-13   50.5   0.5    4.3e-13   49.4   0.1    1.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.7e-11   42.8   0.0      4e-08   32.9   0.0    2.3  2  PF13177.1  DNA polymerase III, delta subunit
    2.9e-07   29.5   0.0     0.0028   16.3   0.0    2.2  2  PF03215.10 Rad17 cell cycle checkpoint protein
    8.4e-07   28.8   0.0    3.6e-06   26.7   0.0    1.8  2  PF13173.1  AAA domain
    4.7e-06   26.1   0.4    1.3e-05   24.7   0.3    1.9  1  PF13245.1  Part of AAA domain
    6.1e-06   26.2   0.4     0.0011   18.9   0.1    2.7  1  PF13401.1  AAA domain
    1.3e-05   25.5   0.1    0.00017   21.9   0.0    2.4  3  PF13191.1  AAA ATPase domain
    9.6e-05   21.5   0.1     0.0011   18.0   0.0    2.1  2  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00027   19.9   0.0    0.00059   18.8   0.0    1.5  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00029   20.4   0.1    0.00045   19.7   0.1    1.3  1  PF13086.1  AAA domain
     0.0005   19.3   0.2     0.0014   17.9   0.1    1.7  1  PF13481.1  AAA domain
    0.00081   18.9   2.0     0.0061   16.0   1.4    2.2  1  PF13604.1  AAA domain
    0.00085   18.8   0.0     0.0014   18.1   0.0    1.4  1  PF01443.13 Viral (Superfamily 1) RNA helicase
    0.00091   18.6   0.4        0.1   11.9   0.2    2.8  1  PF00270.24 DEAD/DEAH box helicase
     0.0013   17.9   0.6      0.023   13.8   0.1    2.5  3  PF12846.2  AAA-like domain
     0.0015   18.3   0.0     0.0029   17.4   0.0    1.5  1  PF13521.1  AAA domain
      0.005   16.4   0.1      0.011   15.3   0.0    1.6  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0053   16.2   0.1     0.0087   15.5   0.1    1.3  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0077   16.4   0.0      0.013   15.6   0.0    1.5  1  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.021   14.1   0.2      0.047   12.9   0.1    1.7  1  PF01695.12 IstB-like ATP binding protein
      0.025   13.6   0.1        1.1    8.3   0.0    2.3  2  PF02562.11 PhoH-like protein
      0.046   13.7   0.0      0.094   12.7   0.0    1.7  1  PF00910.17 RNA helicase
      0.055   13.0   0.2       0.56    9.7   0.0    2.2  2  PF03266.10 NTPase
      0.073   11.9   0.1        0.4    9.4   0.1    1.9  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.081   11.5   0.2       0.26    9.9   0.1    1.8  2  PF03308.11 ArgK protein
      0.098   12.4   0.4       0.22   11.2   0.3    1.7  1  PF13671.1  AAA domain
       0.15   12.7   0.9       0.58   10.8   0.5    1.8  1  PF13207.1  AAA domain


Domain annotation for each model (and alignments):
>> PF08542.6  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.2e-21   5.9e-19       1      88 [.     224     314 ..     224     315 .. 0.98

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 1.2e-21
                 TS--HHHHHHHHHHHHTS...SHHHHHHHHHHHHH----HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHH CS
   PF08542.6   1 dwphpeliknilssilkg...klaearetlyellkkgisaedIltqlyevlkdqdideqlklelidlaaeyearlseGskeilqLeallas 88 
                 d+php++iknil+++l +   +l++a  tl++l + g+++ d   ++++v k++di+e lkl+ +++++ +++r+++G+ ++lqL+allas
  MMETSP0890-20130614|5570_1 224 DQPHPQIIKNILQAVLIQeprNLDTALATLQNLYQRGYAPVDLCATIFKVAKTLDIPEPLKLDTLKQIGLTHMRIADGAASLLQLSALLAS 314
                 68***************99**********************************************************************98 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   8.9e-16   4.3e-13       1     127 [.      40     156 ..      40     161 .. 0.87
   2 ?   -2.1   0.0       7.4   3.6e+03      80     111 ..     195     225 ..     191     240 .. 0.70

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 8.9e-16
                 EEEE-------HHHHHHHHHHC.....THEEEEEECCSSSSST-HHHHHHHHHHHHH.HHHTS....-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHHTTSCCE CS
  PF00004.24   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfke.akeka....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrk 127
                 v+l+GppGtGKT+ +  +a+++        +le+++s+ +   +    ++i+++ k+ +   a    +++ +++DE+da++++            ++++ + ++ ++ +   + + +a+n+ +k+ +a+  +R+ + 
  MMETSP0890-20130614|5570_1  40 VILSGPPGTGKTTSMLCLARQMlgdaaTEAVLELNASDDR--GIDVVRERIKMFAKKkV---AvpsgAHKLVILDEADAMTTAA-----------QQAMRRTMEVYSAS---TRFALACNTSSKIAEAIQ-SRCAIL 156
                 68*******************7654445889*********..99999999999988732...2346778***********9999...........***********994...89****************.9*9875 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 7.4
                 THCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS CS
  PF00004.24  80 eeeervvnqLlteldgvkkkeskvivigatnr 111
                 ++ ++++n L + ++g+++ ++ ++v+ ++ +
  MMETSP0890-20130614|5570_1 195 GDMRNAINNLQSTFSGFNSVTE-TTVLKVCDQ 225
                 5667888899999999988644.777777766 PP

>> PF13177.1  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0048       2.3       2      49 ..      21      67 ..      20      78 .. 0.85
   2 !   32.9   0.0   8.1e-11     4e-08      83     161 ..      80     161 ..      74     162 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0048
   PF13177.1  2 qeeilkilsnaikkgrlahayLfyGeegigkkelalelakallcekkn 49
                +ee +  l+ ++k+g+l +  +++G+ g+gk ++ l la+++l    +
  MMETSP0890-20130614|5570_1 21 NEESIGRLKAIAKSGNLPNV-ILSGPPGTGKTTSMLCLARQMLGDAAT 67
                677788999********997.78*****************99876654 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 8.1e-11
   PF13177.1  83 kideireikeelskkpre...skkkiiiIegaekmnkeaaNaLLKtLEEPpentifiLitsnknkllpTirSRcqelkfspl 161
                 +id +re ++ + kk+     + +k +i+++a+ m+++a+ a+ +t+E  +++t f L+++  +k+ + i+SRc +l+f +l
  MMETSP0890-20130614|5570_1  80 GIDVVRERIKMFAKKKVAvpsGAHKLVILDEADAMTTAAQQAMRRTMEVYSASTRFALACNTSSKIAEAIQSRCAILRFTRL 161
                 57889988888887777556588********************************************************986 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.8e-06    0.0028       5      68 ..       2      60 ..       1      68 [. 0.92
   2 !   11.2   0.0   0.00021       0.1     233     271 ..     177     215 ..     148     238 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.8e-06
  PF03215.10  5 enelwvekykPekaeelavHkkKikeveewlkadflesakkrillltGPsGcgKsTtvkvlske 68
                en +wveky P+ + ++   ++ i  ++   k+  l++      +l+GP+G+gK+T +  l+++
  MMETSP0890-20130614|5570_1  2 ENMPWVEKYRPQLLGDVVGNEESIGRLKAIAKSGNLPNV-----ILSGPPGTGKTTSMLCLARQ 60
                5679*********************************98.....89***********9998875 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00021
  PF03215.10 233 lkspkkqsvlelicqeaeGDlRsAinsLQlsssGenniR 271
                  ++  ++s l  +   aeGD+R Ain LQ   sG n++ 
  MMETSP0890-20130614|5570_1 177 ESVEYNDSGLAALVFTAEGDMRNAINNLQSTFSGFNSVT 215
                 4566677778888999*************9999988765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   7.4e-09   3.6e-06       4     106 ..      39     149 ..      36     163 .. 0.76
   2 ?   -0.6   0.0       2.2   1.1e+03      63      93 ..     236     267 ..     201     270 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 7.4e-09
   PF13173.1   4 ilvitGpRrvGKttllkqlakell...keesilyinlddeelrkladpellelflek..lke..kkkylflDEiqevp.ewedalkslvddg.rnldviltGsnskllskei 106
                  +++ Gp ++GKtt +  la++ l    +e +l++n  d++      +   ++f +k  + +   +k+++lDE+  +   +++a+++ ++ +    ++ l    s+ + + i
  MMETSP0890-20130614|5570_1  39 NVILSGPPGTGKTTSMLCLARQMLgdaATEAVLELNASDDRGIDVVRE-RIKMFAKKkvAVPsgAHKLVILDEADAMTtAAQQAMRRTMEVYsASTRFALACNTSSKIAEAI 149
                 799*******************99*9999*******999888776655.3677777744333788899******99972578888888885545567776666555554444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.2
   PF13173.1  63 kylflDEiqevpewedalkslvddg.rnldvi 93 
                 + +++ E  +++++  +l++l+++g  ++d++
  MMETSP0890-20130614|5570_1 236 QAVLIQEPRNLDTALATLQNLYQRGyAPVDLC 267
                 34899999999999999999999875556655 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.3   2.6e-08   1.3e-05      11      63 ..      38      96 ..      27     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.6e-08
   PF13245.1 11 pllvvtGgPGtGKTttlaaiiaallaarekpgrsvllv.aptgraakrlserl.......l 63
                p +++ G+PGtGKTt  ++++++ l   ++  + vl + a+ +r  + ++er+       +
  MMETSP0890-20130614|5570_1 38 PNVILSGPPGTGKTTSMLCLARQML--GDAATEAVLELnASDDRGIDVVRERIkmfakkkV 96
                33899********************..3333556776656666666777777766654441 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.2e-06    0.0011       7      86 ..      40     125 ..      38     143 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.2e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg.........rltteellealqealrrr 86 
                 ++++G++G+GKTt++  larq    a++     v+  +a+++     +++++    + +             ++++++++a q+a+rr+
  MMETSP0890-20130614|5570_1  40 VILSGPPGTGKTTSMLCLARQMLGDAAT---EAVLELNASDDRGIDVVRERIKMFAKKKVAVpsgahklviLDEADAMTTAAQQAMRRT 125
                 689*****************97554433...3344555555554444444444444433333444555554444455555555555554 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.4e-07   0.00017       2      54 ..      18      68 ..      17      89 .. 0.83
   2 ?    1.3   0.0      0.71   3.5e+02     129     157 ..      92     128 ..      63     138 .. 0.66
   3 ?   -2.2   0.0       8.7   4.2e+03      75      87 ..     231     243 ..     165     280 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.4e-07
   PF13191.1  2 lvGRereleaLlaalrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrf 54
                +vG e+ + +L+a  ++  +    +++++Gp+G+GK++ + +la+++l +++ +
  MMETSP0890-20130614|5570_1 18 VVGNEESIGRLKAIAKS-GN--LpNVILSGPPGTGKTTSMLCLARQMLGDAATE 68
                68999999999977773.33..339*****************999999887765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.71
   PF13191.1 129 r.........rpklvlvlDDlqwadresldlLealler 157
                 +          +  +++lD+++ +++++++++++ +e 
  MMETSP0890-20130614|5570_1  92 AkkkvavpsgAH-KLVILDEADAMTTAAQQAMRRTMEV 128
                 244444444322.5899**********99999988876 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 8.7
   PF13191.1  75 lrellrqlltela 87 
                 ++ +l+++l ++ 
  MMETSP0890-20130614|5570_1 231 IKNILQAVLIQEP 243
                 3333333333333 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.3e-06    0.0011       3      59 ..      16      75 ..      14      92 .. 0.80
   2 ?    1.3   0.0      0.29   1.4e+02     105     132 ..     102     128 ..      89     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.3e-06
  PF01078.16  3 kdvkGqeeakral.eiaaaGg.HnlllvGppGsGKtmlakrlp.sllpplseeealevak 59
                 dv+G+ee+   l  ia +G+  n++l GppG+GKt    +l+ ++l +  +e +le ++
  MMETSP0890-20130614|5570_1 16 GDVVGNEESIGRLkAIAKSGNlPNVILSGPPGTGKTTSMLCLArQMLGDAATEAVLELNA 75
                689999888755516999998459***********9988777526888888888888765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.29
  PF01078.16 105 ahnGvLfLDElpefkrkvleaLRePled 132
                 ah  +++LDE+  +++ + +a+R+ +e 
  MMETSP0890-20130614|5570_1 102 AH-KLVILDEADAMTTAAQQAMRRTMEV 128
                 44.46789***************99996 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-06   0.00059      16      77 ..       8      64 ..       2      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.2e-06
   PF05496.7 16 kslrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgve 77
                ++ rP+ l + +g e+   +lk +     +++ +l  v+l+GpPG Gktt    +a+++  +
  MMETSP0890-20130614|5570_1  8 EKYRPQLLGDVVGNEESIGRLKAI-----AKSGNLPNVILSGPPGTGKTTSMLCLARQMLGD 64
                5789***********999999855.....44567899**************99999998655 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   9.3e-07   0.00045       9      72 ..      30     104 ..      21     224 .. 0.55

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 9.3e-07
   PF13086.1   9 aikealsssgitliqGpPgtGKtttivelisqllsek............seseakkkkrvLvcapsnaavDeiler 72 
                 ai+++ + ++  ++ GpPgtGKtt ++ l +q+l ++                    +r+ + a+  +av   + +
  MMETSP0890-20130614|5570_1  30 AIAKSGNLPN-VILSGPPGTGKTTSMLCLARQMLGDAateavlelnasdDRGIDVVRERIKMFAKKKVAVPSGAHK 104
                 4444444445.899*******************6443444444433333222222222223333333333222222 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.8e-06    0.0014      36     137 ..      40     126 ..      17     136 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.8e-06
   PF13481.1  36 tllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEds..eaelrrrlsailaalddpenlllvslagvgslrltaddrrdalltadlerllaai 137
                 ++l G+pgtGK+t +l la +++ G+     +     +Vl l+a d+   + +r+r++ ++a+    + +  ++       +l+  d+ da++ta+ +++++++
  MMETSP0890-20130614|5570_1  40 VILSGPPGTGKTTSMLCLARQML-GD-----A--ATEAVLELNASDDrgIDVVRERIK-MFAKK-KVAVPSGAH-------KLVILDEADAMTTAAQQAMRRTM 126
                 799********************.44.....3..346888888877744568888887.44442.233333333.......46666666666666666666655 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.4   1.3e-05    0.0061      20     122 ..      39     131 ..      27     205 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.3e-05
   PF13604.1  20 vavvqGpAGtGKttvlkalr.ealeaag.krvv.glAptgkaakvLeeelgiearTiasllerldkeeaegrkeldaktllvvDEAgmvdtrqlarlleaaekaga 122
                  ++++Gp+GtGKtt++  l+ ++l +a    v+ + A   +  +v++e+           ++  +k++   +    a++l+++DEA  + t   +++ +++e ++a
  MMETSP0890-20130614|5570_1  39 NVILSGPPGTGKTTSMLCLArQMLGDAAtEAVLeLNASDDRGIDVVRER-----------IKMFAKKK--VAVPSGAHKLVILDEADAMTTAAQQAMRRTMEVYSA 131
                 46889*********99875504444432122220334444444444444...........33333322..223378899999999999998887777776666555 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.9e-06    0.0014       2      71 ..      41     115 ..      40     128 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.9e-06
  PF01443.13   2 vvhGvpGcGKStlirkllrt.....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEylllh 71 
                 + +G pG GK+t+   l+r+      t+ +   ++  ++  ++ +++++++ +   a   +  k++ilDE+ +++
  MMETSP0890-20130614|5570_1  41 ILSGPPGTGKTTSMLCLARQmlgdaATEAVLELNASDDRGIDVVRERIKMFAKKKVAVPSGAHKLVILDEADAMT 115
                 67899***************875543333333444444449999999999999888888889********96655 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   0.00021       0.1      16      74 ..      39     176 ..      26     219 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00021
                 EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTS..................................................................................EEEEEESSHHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  16 dvlvaaeTGsGKTlaflipvlqilletlkkttik..................................................................................kalivaPtreLaeqtlnnlkkfkky 74 
                 +v+++++ G+GKT+ +l  + q+l +     +                                                                                    ++ i+  tr   +q+l +l++++k 
  MMETSP0890-20130614|5570_1  39 NVILSGPPGTGKTTSMLCLARQMLGDAAT--E-AvlelnasddrgidvvrerikmfakkkvavpsgahklvildeadamttaaqqamrrtmevysastrfalacntsskiaeaiqsRCAILRFTRLTDAQVLLRLEQVCKA 176
                 67788888888888888777777754322..2.235555556666677777777777777777777777777777777777777777777777777777666666666666666666666666666666666666666655 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.7e-05     0.023       2      27 ..      38      63 ..      37      86 .. 0.87
   2 ?    1.2   0.0      0.32   1.6e+02     237     259 ..      90     117 ..      83     134 .. 0.69
   3 ?   -1.4   0.0         2   9.9e+02      63      97 ..     201     241 ..     139     266 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.7e-05
   PF12846.2  2 pntlilGppGsGKSvllkklvlqlla 27
                pn++++GppG GK++ +  l++q+l 
  MMETSP0890-20130614|5570_1 38 PNVILSGPPGTGKTTSMLCLARQMLG 63
                89*******************99986 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.32
   PF12846.2 237 frapkdlrd.....kllviDEahrllgs 259
                 ++a+k+ +      kl+++DEa  ++ +
  MMETSP0890-20130614|5570_1  90 MFAKKKVAVpsgahKLVILDEADAMTTA 117
                 55555555556666********988865 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2
   PF12846.2  63 lNPfdigpteagaekleaea....dphsreldllla..lle 97 
                 +N ++    +++  ++++      +ph++ ++++l+  l++
  MMETSP0890-20130614|5570_1 201 INNLQSTFSGFNSVTETTVLkvcdQPHPQIIKNILQavLIQ 241
                 44444444444444433333555566666666666644433 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.9e-06    0.0029       2      49 ..      40     106 ..      39     142 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.9e-06
   PF13521.1   2 ivitGgpstGKTtlleaLaar...................gypvvpEvarevleeklakgeealpwe 49 
                 ++++G+p+tGKTt +  La++                   g+ vv+E   ++ ++k+a   +a + +
  MMETSP0890-20130614|5570_1  40 VILSGPPGTGKTTSMLCLARQmlgdaateavlelnasddrGIDVVRERIKMFAKKKVAVPSGAHKLV 106
                 89***********998887433333333344444445555888888888888888886555544443 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-05     0.011       1      84 [.      39     121 ..      39     133 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-05
                 EEEEE------HHHHHHHGGGGB.....S--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG---HHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaeal.....nreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEveraesevlns 84 
                 +v+L GppGtgK++ +  la+ +     +  v++ + ++d   + +  r+++       +++++v ++   + ++lDE + + ++++++
  MMETSP0890-20130614|5570_1  39 NVILSGPPGTGKTTSMLCLARQMlgdaaTEAVLELNASDDRGIDVVRERIKM-----FAKKKVAVPSGA-HKLVILDEADAMTTAAQQA 121
                 69************99999998887655555555555555555555555555.....333333333332.2556677777666666665 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.8e-05    0.0087       2      88 ..      40     128 ..      39     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.8e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevyeekekefefkkGpv...fanllladeinrappktqsalleamee 88 
                 v+l g PG++kt+ + +la+++  +        +l  sd  G++v++e+ k f  kk +v    ++l++ de +  ++ +q a+  +me 
  MMETSP0890-20130614|5570_1  40 VILSGPPGTGKTTSMLCLARQMLGDAA-TEAVLELNASDDRGIDVVRERIKMFAKKKVAVpsgAHKLVILDEADAMTTAAQQAMRRTMEV 128
                 899*****************9987765.567789999*************9999999888444569******************999985 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-05     0.013       1      79 [.      40     109 ..      40     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.7e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviid 79 
                 ++++G+pG+GKtT    La+ +   l d a e  le    d+   +  ++++e++++ + +k++  +   ++++ vi+d
  MMETSP0890-20130614|5570_1  40 VILSGPPGTGKTTSMLCLARQM---LGDAATEAVLELNASDD---RGIDVVRERIKMFAKKKVAVPS---GAHKLVILD 109
                 79************99999875...77777777666666666...6666666666666665555532...445555554 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.6e-05     0.047      48     119 ..      38     113 ..      21     164 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.6e-05
  PF01695.12  48 enlvllGpsGvGKthlAialgveavr..aglsvlfvrl.edLveeLkrakgdgrleralkrla.kvdllilDdlgl 119
                  n++l Gp+G+GKt     l+ +     a  +vl +++ +d    + r++ +  ++++++      +l+ilD++  
  MMETSP0890-20130614|5570_1  38 PNVILSGPPGTGKTTSMLCLARQMLGdaATEAVLELNAsDDRGIDVVRERIKMFAKKKVAVPSgAHKLVILDEADA 113
                 59************87777777765422222333222213444455555555555555544330446777776654 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0022       1.1      20      49 ..      38      67 ..      23      76 .. 0.79
   2 ?    2.8   0.0      0.11        54     120     138 ..     103     121 ..     101     132 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0022
  PF02562.11 20 divfaiGpaGtGKTylavalavealkkkkv 49
                  v++ Gp GtGKT   ++la ++l +   
  MMETSP0890-20130614|5570_1 38 PNVILSGPPGTGKTTSMLCLARQMLGDAAT 67
                47999**********999999999877655 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.11
  PF02562.11 120 dafvilDEaqnttkeqmkm 138
                 +++vilDEa  +t++  + 
  MMETSP0890-20130614|5570_1 103 HKLVILDEADAMTTAAQQA 121
                 578*******999876554 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019     0.094       1      26 [.      40      65 ..      40     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00019
  PF00910.17  1 iwlyGpsgeGKStlakeLakallkkl 26
                ++l+Gp+g+GK+t +  La+++l++ 
  MMETSP0890-20130614|5570_1 40 VILSGPPGTGKTTSMLCLARQMLGDA 65
                689******************99655 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0011      0.56       1      20 [.      39      58 ..      39      67 .. 0.83
   2 ?    0.9   0.0      0.59   2.9e+02      95     147 ..     102     152 ..      74     173 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0011
                EEEEE-------HHHHHHHH CS
  PF03266.10  1 rvfiTGepgvGKtTlvkkvl 20
                +v+++G+pg+GKtT +  ++
  MMETSP0890-20130614|5570_1 39 NVILSGPPGTGKTTSMLCLA 58
                589***********876655 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.59
                 HH-EEEE------GGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT- CS
  PF03266.10  95 eadviviDEIGkmElkskkfkeaveevlssekpvlatvhrrkelalveeirkr 147
                   +++++DE  +m   +++  +   ev s ++++      +  ++++e i++r
  MMETSP0890-20130614|5570_1 102 AHKLVILDEADAMTTAAQQAMRRTMEVYSASTRFALACNTS--SKIAEAIQSR 152
                 44599999999999999888888888888555554444444..4677777777 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00083       0.4       4      55 ..      40      92 ..      38     134 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00083
   PF09848.4  4 ilvtGvaGtGKtvvalnllael.edseeertavflsgNhplvkvlrealakkl 55
                ++ +G +GtGKt  +l l+ ++  d + e   ++   + + ++v+re+++  +
  MMETSP0890-20130614|5570_1 40 VILSGPPGTGKTTSMLCLARQMlGDAATEAVLELNASDDRGIDVVRERIKMFA 92
                6789***************9993333333333444444555667777664333 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00053      0.26      22      83 ..      30      90 ..      19     103 .. 0.82
   2 ?    1.9   0.0      0.15        71     205     231 ..      68      94 ..      53     128 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00053
                HGGG----EEE--B-------HHHHHH---HHHH----EEEEEE------------------ CS
  PF03308.11 22 ilpkaGralvvGltGvPGaGkstlveklikelrrrGkrvavlavDPsspftGGsilGDrlRl 83
                 ++k+G+   v l G PG+Gk t +  l+ ++       avl ++ s    G  ++ +r+++
  MMETSP0890-20130614|5570_1 30 AIAKSGNLPNVILSGPPGTGKTTSMLCLARQMLGDAATEAVLELNAS-DDRGIDVVRERIKM 90
                56899*********************999999999999999988754.45577777777776 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.15
                 -EEEE-BTTTTB--HHHHHHHHHHHHH CS
  PF03308.11 205 ppvlktsavegeGidelvdaieehrev 231
                  +vl+  a+ ++Gid + ++i+ +++ 
  MMETSP0890-20130614|5570_1  68 EAVLELNASDDRGIDVVRERIKMFAKK 94 
                 679999***************998753 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00045      0.22       2      23 ..      40      65 ..      40     172 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00045
   PF13671.1  2 vllvGlpGsGKstl....aerllkkl 23
                v+l G+pG+GK+t     a+++l + 
  MMETSP0890-20130614|5570_1 40 VILSGPPGTGKTTSmlclARQMLGDA 65
                799**********7333344444433 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5    0.0012      0.58       2      14 ..      40      52 ..      39      59 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0012
                E--B--TT---HH CS
   PF13207.1  2 iaitGppGsGKsT 14
                ++++GppG+GK+T
  MMETSP0890-20130614|5570_1 40 VILSGPPGTGKTT 52
                899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:00.86
# Mc/sec: 886.09
//
Query:       MMETSP0890-20130614|5576_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-21   75.1   0.1    4.9e-20   71.5   0.0    2.3  2  PF00620.22 RhoGAP domain
  ------ inclusion threshold ------
        6.6    6.6   8.6        9.3    6.2   6.0    1.2  1  PF02993.9  Minor capsid protein VI


Domain annotation for each model (and alignments):
>> PF00620.22  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   7.1e-24   4.9e-20       6     146 ..      51     188 ..      47     191 .. 0.89
   2 ?   -3.9   0.0       1.2   8.2e+03      84     107 ..     320     343 ..     314     345 .. 0.55

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 7.1e-24
                 HHHHHHHHH-TT-TTTTSS---HHHHHHHHHHHHH----S.......CCCSS-HHHHHHHHHHHHHHSSS-TT-GGHHHHHHHHHCCSHGGGHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHCTHHHH---HHHHHHHHHHHHCT- CS
  PF00620.22   6 kcvefiekrgldtegiyRvsgsksrvkelreafergkavde......dleeedvhavasvLKrfLrelpepLltkelyeelleaaksedeeerlealkellekLpkenretLryLlehLkrvaenseenkMtaenLaivfaPtLlrp 146
                  ++++i++rgl+  g++Rv+g+++ vke  +++++g + +         ++ ++  +a++LK++ r  p+ +lt+e  + l  a   +++  + + l +++e+      +   +L+++L  va+++e nkM+a+nLa+vfaP+L+ +
  MMETSP0890-20130614|5576_1  51 ALINYIKNRGLEKAGLFRVPGNAEAVKEASDKLDAGVSIEDillgigLDDDSTIDFLATLLKQWVRCRPNTILTDETRSLLS-A---RCAAGQDDYLADIIEQ-----NSAAGMLFSLLADVADREEMNKMSAYNLAVVFAPNLVDD 188
                 689***********************************9989****999999999********************9988777.3...5666666667777764.....456689******************************976 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.2
                 HCCSHGGGHHHHHHHHHCTS-HHH CS
  PF00620.22  84 aksedeeerlealkellekLpken 107
                 a+++  e r+ al++ ++++ +++
  MMETSP0890-20130614|5576_1 320 ARTQALEARIAALERECQNFRQQH 343
                 444555555666665555555555 PP

>> PF02993.9  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.0    0.0014       9.3      99     199 ..     204     311 ..     182     338 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0014
   PF02993.9  99 ekdlekrlekrlge.....eepatqeetvedlkqaeekkkrpeaeetlvpaapepPsleealkqkpapveepveesatavla....ldkpvtlelppaeqkapkvvpqas 199
                  + +++ +  +++        p++ e++ +  +     + + e+e+ +vpa++ pP+    +k++p   e+p+ ++ ++ +     +++p+ ++  pa+ ++p+    + 
  MMETSP0890-20130614|5576_1 204 ISSIQQSRYAMPPSsldsySSPQSDEALTQGEEDHRISHSHYEEEQHAVPAQKPPPPPPARRKTHPDTNERPHSPPSQNRTPppmpEHTPKDSQFHPAPPPPPPP--RQK 311
                 556666666666665554444455555555222333333444578899999999999999999999777777777666555434457888888887766554443..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:00.96
# Mc/sec: 873.67
//
Query:       MMETSP0890-20130614|5573_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-11   44.7   0.0    2.7e-11   43.7   0.0    1.5  1  PF13519.1 von Willebrand factor type A domain
    6.2e-09   35.6   0.0    2.8e-08   33.4   0.0    2.1  1  PF13768.1 von Willebrand factor type A domain
    0.00035   20.4   0.0      0.023   14.6   0.0    2.4  2  PF13620.1 Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.079   12.7   0.0        1.3    8.8   0.0    2.4  2  PF03752.8 Short repeats of unknown function


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   7.8e-15   2.7e-11       4     158 ..     286     456 ..     284     461 .] 0.75

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 7.8e-15
   PF13519.1   4 lvlDvSgSMnaedvsptrldaakaalkdllde...lpgdrvglvafsgsaelvap.....ltsdraalkaalnsldprlmpgggtnlaaalalalellakadgrraaivlvtDGedn....................ssdie....aasalkragikiyvvgvgsdegaeallkelaeatggryfda 158
                 ++ DvS SM        r+d ++ ++ d+ld+   + g++++l +f++++   +        + + a   ++ +l++    + gtn+ +a+++al  + +a+    ++++++DGe +                    +   +    a++a +  +i+ ++v++g+d + ++ +++++ a+gg+  d+
  MMETSP0890-20130614|5573_1 286 VLGDVSYSMEKG----HRMDILRRSFLDFLDHgivQRGASAALASFDDGPLDWCSeewinSADMAYAASVWIGKLTA----RSGTNVRRAVEEALHKFPDAT----DVFVLGDGETEpfcidtgvtltkpddnpefyP---DtnfaAFRASRFPQIRFHFVAFGKDAD-RQKMQQMTAAGGGAHTDV 456
                 556******988....7**************98755799*********87544331210033445555666777776....6*****************886....********655555555555555433344442...04444777777889***********88.5************98887 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   8.1e-12   2.8e-08       3     153 ..     284     452 ..     282     455 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 8.1e-12
   PF13768.1   3 vVivvDvsssmsgep.velvk.daLsailrs.Lpprdkvnvvlfgtearplfpgsravssae.lqellqkvkeleadlGasnlegaLkealrqp.............akpgearhvllls..dgsstsgaervlqliraaa.rkirifalglgetlsadmlqeLAeaggGs 153
                  +++ Dvs sm+    ++ ++ + L +++ +  + + + ++++f++ + ++  +  +++sa+   ++  ++ +l+a ++++n+++a +eal ++               p ++++ + l+  d ++  +++  +++ ra++  +ir++++++g++++++++q++  aggG+
  MMETSP0890-20130614|5573_1 284 AIVLGDVSYSMEKGHrMDILRrSFLDFLDHGiVQRGASAALASFDDGPLDWCSE-EWINSADmAYAASVWIGKLTA-RSGTNVRRAVEEALHKFpdatdvfvlgdgeTEPFCIDTGVTLTkpDDNPEFYPDTNFAAFRASRfPQIRFHFVAFGKDADRQKMQQMTAAGGGA 452
                 6899******999888887761567777777667777*********98766543.44444440557889*******.9*************9888888899999988888899999999967777666778889*****99999**************************7 PP

>> PF13620.1  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.7e-06     0.023      29      79 ..     102     150 ..      92     155 .. 0.86
   2 ?    3.1   0.0     0.025        87      26      58 ..     196     229 ..     187     241 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.7e-06
   PF13620.1  29 vagtttdadGrFrleglppgtytltvsapgyatatvkdvtlsagqtttldi 79 
                 +++  +d++Gr  ++++p g+y+++v a+g  +a    +++++ ++++++i
  MMETSP0890-20130614|5573_1 102 SHSLLSDENGRVDISSIPDGKYSVQVFASGISPAL--PLKIEDAENSSVEI 150
                 67889**************************9998..48888888888877 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.025
   PF13620.1  26 tgtvagtttdadGrFrleglppgty..tltvsapg 58 
                  + + +t td+dG   l  lp g+   ++tv+a++
  MMETSP0890-20130614|5573_1 196 RSYQVSTETDEDGVAALV-LPDGSTlsQVTVQAEN 229
                 345678999999999997.8887742256666665 PP

>> PF03752.8  Short repeats of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.11   3.7e+02      15      24 ..     316     325 ..     315     331 .. 0.78
   2 ?    8.8   0.0   0.00038       1.3       7      23 ..     356     372 ..     355     384 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.11
   PF03752.8  15 VrtAAaaALd 24 
                 V++ A aAL+
  MMETSP0890-20130614|5573_1 316 VQRGASAALA 325
                 89*******3 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00038
   PF03752.8   7 llatgGpaVrtAAaaAL 23 
                 l+a +G++Vr+A ++AL
  MMETSP0890-20130614|5573_1 356 LTARSGTNVRRAVEEAL 372
                 78999************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:01.01
# Mc/sec: 1093.78
//
Query:       MMETSP0890-20130614|5579_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 115.38
//
Query:       MMETSP0890-20130614|5577_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-96  317.9   0.4    5.8e-52  174.9   0.4    2.4  2  PF03367.8  ZPR1 zinc-finger domain
  ------ inclusion threshold ------
       0.21   11.2   7.6          3    7.4   0.6    2.4  2  PF01155.14 Hydrogenase expression/synthesis hypA family


Domain annotation for each model (and alignments):
>> PF03367.8  ZPR1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   0.4   8.5e-56   5.8e-52       2     160 ..      43     202 ..      42     203 .. 0.96
   2 !  140.5   0.0   3.3e-45   2.3e-41       2     159 ..     283     442 ..     282     444 .. 0.96

  Alignments for each domain:
  == domain 1    score: 174.9 bits;  conditional E-value: 8.5e-56
                 E--TTT--.TT-EEEEEE--TTS--EEEEEEE-S----EEEEEE----------EEEEEE-SGGGGG-EEE--TT-EEEEGGGTEEE-.-------EEE----HHHHHHHHHSS--------GGG-HHHHHHHHH----.------EEEEEE------EE- CS
   PF03367.8   2 sdCpsCgk.egetklkltkiPyFkeviimsleCekCgyksnevksaeeiepkGvritlkvekeedlnrdvvksesasieipEldleiePgkalegelttvEGllerveeelskaqekrdsedeekkkkieefleklkel.kegkekltlileDplgnsyie 160
                 s C+sC++ +g t+l+ltkiPyF+e+i++s+eCe Cg ++++v+ ++ei +kG++++l++e+ +dl r+++ks++a+i+ip ++lei P++a++g+++t+EG+l+r+ +el++ q +r++ d+e+++ki++++++l+ + ++++ ++t++leDp+gns+ie
  MMETSP0890-20130614|5577_1  43 SYCMSCEEsSGVTRLMLTKIPYFREIILSSFECESCGERNTQVQFGGEIAEKGCKYSLQCEDVKDLDRRIIKSDTAIIQIPQIELEI-PTNAQRGTISTIEGVLKRAADELETLQPARQQIDPETANKIQNVIHHLRLYaQATNLPFTFLLEDPSGNSFIE 202
                 68****97258999*************************************************************************.*************************************************98356778**************97 PP

  == domain 2    score: 140.5 bits;  conditional E-value: 3.3e-45
                 E--TTT--TT-EEEEEE--TTS--EEEEEEE-S----EEEEEE----------EEEEEE-SGGGGG-EEE--TT-EEEEGGGTEEE-.-------EEE----HHHHHHHHHSS--..------GGG-HHHHHHHHH---------.-EEEEEE------EE CS
   PF03367.8   2 sdCpsCgkegetklkltkiPyFkeviimsleCekCgyksnevksaeeiepkGvritlkvekeedlnrdvvksesasieipEldleiePgkalegelttvEGllerveeelskaqe..krdsedeekkkkieefleklkelkegke.kltlileDplgnsyi 159
                  +Cp C+++g+ ++ + ++P+Fk+ iims++Ce Cg++++e+k +++i +kG+  +l + + +dl+rd++ks++as eip+ldl ++   +l g  t vEGll++++++ls+a    + ds+d+ k + ++++l+ l+++++g++ ++t+il+Dpl+ns+i
  MMETSP0890-20130614|5577_1 283 VNCPTCQHPGNERMCTAQVPHFKQCIIMSFVCEMCGFRNSEIKAGGAIPDKGICAQLLLVDINDLSRDILKSDTASFEIPDLDLTLT-RGSLGGVYTSVEGLLSKIKSNLSAADPfsAGDSADHTKRTTMNALLNSLDRFIQGESfPMTIILTDPLANSFI 442
                 58************************************************************************************7.89*********************988767999********************9987549*************9 PP

>> PF01155.14  Hydrogenase expression/synthesis hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6   0.00044         3      70     105 ..      42      91 ..      26      97 .. 0.88
   2 ?    6.9   0.7   0.00063       4.3      64     102 ..     276     327 ..     268     331 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00044
                 EEE-SSSS-EE-S--S---..............-SSSSS---EEEE---- CS
  PF01155.14  70 svrCreCgeeveleerale..............CpkCgsadveivsgeel 105
                 + +C++C+e+  +++  l+              C++Cg+++++++ g e+
  MMETSP0890-20130614|5577_1  42 QSYCMSCEESSGVTRLMLTkipyfreiilssfeCESCGERNTQVQFGGEI 91 
                 5689****99999999977799999*******************999886 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00063
                 E-----EEE-SSSS-EE-S--S---.............-SSSSS---EEEE- CS
  PF01155.14  64 ieevpvsvrCreCgeeveleerale.............CpkCgsadveivsg 102
                 i++v+  v C +C++ ++ +  +++             C+ Cg ++ ei++g
  MMETSP0890-20130614|5577_1 276 IQMVQFAVNCPTCQHPGNERMCTAQvphfkqciimsfvCEMCGFRNSEIKAG 327
                 889999*********999998887778999****************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:01.08
# Mc/sec: 1195.96
//
Query:       MMETSP0890-20130614|5585_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.71
# Mc/sec: 280.14
//
Query:       MMETSP0890-20130614|5583_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-13   48.8   0.1    3.5e-13   48.8   0.1    2.3  3  PF00013.24 KH domain
    7.4e-06   25.4   1.4    4.5e-05   22.9   0.3    2.8  2  PF13014.1  KH domain
     0.0026   17.1   0.3      0.031   13.6   0.1    2.7  2  PF07650.12 KH domain


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   7.6e-17   3.5e-13       2      57 ..      14      73 ..      13      74 .. 0.88
   2 ?   -2.6   0.0      0.87     4e+03      23      36 ..     111     129 ..     111     146 .. 0.51
   3 ?   -3.1   0.1       1.2   5.7e+03      33      55 ..     366     390 ..     365     393 .. 0.62

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 7.6e-17
                CEEEEECCCCHHH---TTHHHHHHHHHHT-EEEE..--SE...EEEEEESHHHHHHHHHH CS
  PF00013.24  2 arvkvpnskigriIGkgGsnIkeIeeetgakIdv..pkdr..dtvtisGdpesvekAkkl 57
                ++v +p ++ig++IGk G+ + +I++et++++ +  +++   + v+i+G+ ++v +A kl
  MMETSP0890-20130614|5583_1 14 LTVWIPYEQIGAVIGKSGKIVTKIQNETKCNVVIdySEKSawTPVHIKGNIDNVFNAGKL 73
                5799******************************653322577**************987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.87
                 HHHHHHHT-EEEE.....- CS
  PF00013.24  23 keIeeetgakIdv.....p 36 
                 k+I    +++I +     +
  MMETSP0890-20130614|5583_1 111 KRISATHHVRIYIsllqnE 129
                 6777777888887555431 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.2
                 EEE--S.E..EEEEEESHHHHHHHH CS
  PF00013.24  33 Idvpkd.r.dtvtisGdpesvekAk 55 
                 I+v ++ r   + ++G  ++v++A 
  MMETSP0890-20130614|5583_1 366 IQVLEEkReVAFIVKGIEANVNAAA 390
                 7774442445566678888888885 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.3     1e-08   4.5e-05       1      26 [.      22      47 ..      22      53 .. 0.94
   2 ?   -0.9   0.0      0.29   1.3e+03      14      27 ..     111     124 ..     111     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1e-08
   PF13014.1  1 lvgliIGkgGetIkeIreetGakIrf 26
                ++g++IGk+G+++ +I++et +++ +
  MMETSP0890-20130614|5583_1 22 QIGAVIGKSGKIVTKIQNETKCNVVI 47
                79*********************988 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.29
   PF13014.1  14 keIreetGakIrfp 27 
                 k+I +++ ++I ++
  MMETSP0890-20130614|5583_1 111 KRISATHHVRIYIS 124
                 6899999****996 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   6.9e-06     0.031      18      58 ..       5      45 ..       2      67 .. 0.85
   2 ?   -0.4   0.0      0.17   7.7e+02      43      58 ..     398     413 ..     398     422 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.9e-06
                EEEEBSSSEEEEEEEESCCCCC------HHHHHHHHHHHHC CS
  PF07650.12 18 veIertenrviiviresqpgivIGkgGsnikklgkelrkri 58
                + I+++e r+++ i  +q+g vIGk G+ + k+++e +  +
  MMETSP0890-20130614|5583_1  5 INIKDQELRLTVWIPYEQIGAVIGKSGKIVTKIQNETKCNV 45
                78999999*************************99977665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.17
                 ---HHHHHHHHHHHHC CS
  PF07650.12  43 gGsnikklgkelrkri 58 
                 +G+ ik++ ++lrk++
  MMETSP0890-20130614|5583_1 398 EGEPIKEVLAALRKQF 413
                 5999**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1668  (0.122001); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.57u 0.38s 00:00:01.95 Elapsed: 00:00:01.10
# Mc/sec: 1074.00
//
Query:       MMETSP0890-20130614|5588_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-42  146.0   0.0    1.9e-42  145.6   0.0    1.1  1  PF00251.15 Glycosyl hydrolases family 32 N-terminal domain


Domain annotation for each model (and alignments):
>> PF00251.15  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0   1.4e-46   1.9e-42       1     304 [.      25     327 ..      25     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 145.6 bits;  conditional E-value: 1.4e-46
                 SB--SSSBEEEEE-EEE----EEEEEEE-TTSS---.-EEEEEEESSSSSBEEEEEEE.-SSSGGCT-------EEE----EEEEEEEEETCS..EEEEEEEEESSTT-SEEE-TT.--SB-S-S---TTS----EEEE---S-EEEEE---BT.TB--BEEEEESSSSSEEE-SS-CB-TT.--S-EEEEEEEEEE---E---TEEEEEEEEE....TTTTEEEEEE-EEETTTTEEEEE.......................-----BSB---.--S-EEEEETTTTCEEEE---S-TTTHHHHCHG---B--B---EEEEEET--TEE CS
  PF00251.15   1 HfqpekgwmNDPnglvyykgeYhlFYQynpkgavwgnisWghavSkDlvhWeelpval.apdeeydknGvfSGsavvlpdklvllYTgntkke..eqvqnlayskdkgrewtkyekknpvlvekpeentkdfRDPkvawkedgkwrmvvgakdk.kkgkvllYkskdlkewelasellhseekeggmwEcpdlfpvskkeeeekkvkhvlkvspqgledntsqdyyfigefdaekkkftae.......................sgellrlDyGkdfYAsqtfydekkkrriligwmgewdseaadvpekgwagllslpReltlkdsgkkL 304
                 H++p+++w+NDPngl y   +Y  +YQ+np +++wg++sWg+a S+Dl+ W+++ + l +p+ +y++ G++SG av+    l+   T  ++++  ++  +la +  +g++ +k    npvl+ +p++ t   RDP   ++e +   +++ga+   ++g+vll +   +k+  +   +  +   +  m+Ecpd+  ++++       ++vlk+s+ +  +++++d +++g +++++++   +                          +lrlD G+  YAsq+f+   +++ i +gw++  d++      + ++g+ls+pR+l ++d  ++L
  MMETSP0890-20130614|5588_1  25 HVAPARNWLNDPNGLHYDGSKYRAYYQHNPGSPQWGDMSWGQASSTDLLYWQRETTILtSPRPSYETAGAWSGNAVIGG-LLAYSCTRWSNSKgiDSSLCLAST--DGIRSKK----NPVLQ-TPAQATGGWRDPAP-FQEGNSTFLAFGASLGpRRGAVLLTSFPQVKHIVQPLFTVPRIRGAPDMIECPDVAWLDEN-------VVVLKLSIMAN-RSQRHDLFILGLLERNTENS--PvftplnksrnlprcggirpdwevAVGALRLDCGD-LYASQSFKLMPNQQLIYMGWIKDQDTN------ELYNGALSFPRHLFFQD--DRL 327
                 9***************************************************999888358899***********9965.444455555554433445555554..6666666....9***9.58999*********.777677788888888867777777766776666544444444444499************8.......58999999555.59**********97666554..235779**************998856689*****9.*********7777*********76664......789************87..555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:01.15
# Mc/sec: 913.09
//
Query:       MMETSP0890-20130614|5591_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    8.4   5.5       0.78    9.6   0.6    2.1  2  PF05103.8 DivIVA protein


Domain annotation for each model (and alignments):
>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   5.7e-05      0.78      33      63 ..      13      41 ..      11      53 .. 0.89
   2 ?    0.4   0.2     0.042   5.7e+02      33     100 ..      63     127 ..      54     154 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 5.7e-05
   PF05103.8 33 dyeallkeneelkeeieeleekleeykelee 63
                dye+l +en++l+++++++e+  ++y+  ee
  MMETSP0890-20130614|5591_1 13 DYERLMAENRALQRRLAAAERTTRNYE--EE 41
                9*************************6..33 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.042
   PF05103.8  33 dyeallkeneelkeeieeleekleeykeleeslkkslvvaqeta.eevkanakkeaeliikeaekkaek 100
                  +e++++ n+ l + +     + +++     +   s+++a ++a e+ +  +k++++ +i++++ ++++
  MMETSP0890-20130614|5591_1  63 ALENMIAANRLLAASVGSQVPEEDDL---VAD-AASVLTASRVAlERARHYTKRRTKPKIRSTRPDSSA 127
                 44444444444444443333222222...222.234444444443556666666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.99
# Mc/sec: 568.83
//
Query:       MMETSP0890-20130614|5593_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 183.25
//
Query:       MMETSP0890-20130614|5595_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-09   38.1   0.0    1.5e-09   37.5   0.0    1.2  1  PF02678.11 Pirin
    1.3e-05   25.0   0.0    2.2e-05   24.3   0.0    1.4  1  PF05726.8  Pirin C-terminal cupin domain


Domain annotation for each model (and alignments):
>> PF02678.11  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.2e-13   1.5e-09      14      94 ..      36     113 ..      26     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 2.2e-13
                 EEEEESS-BTTB--SS----TTEEE-----EEE--S-EEEEEEEE--EEEEE----EEEE--...--EEEEE-----EEEEE-- CS
  PF02678.11  14 lqlvdpFlfldhfgpaklsagedelgagfppHpHrgletvtylleGeiehrDslGnkgvirp...gdvqwmtAGsGivHsEmpe 94 
                 l+ vdpF++ d  +   +  ++     +f +HpH g  + ++++eG +  rDs ++k+  +p   gdv   +AG+Gi H+E+++
  MMETSP0890-20130614|5595_1  36 LHDVDPFVLCDVAK---IPKAN---MPDFGAHPHFGCIACSVVIEGGLLDRDSVTRKEFAEPsksGDVYAASAGRGIYHEEVSA 113
                 56799***999855...44334...49******************************998654449***************986 PP

>> PF05726.8  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.3e-09   2.2e-05       5      78 ..     177     250 ..     173     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.3e-09
   PF05726.8   5 tleagakfelplpegl.eafvyvleGsgevggersaieeeqlvvlg.dgdsvevkaeekgarvlllaGePlgepvv 78 
                 +l+a+ + +l++p+++   f + + Gsg+v ge  ++++++++v+g +gds++++a++++ +v + +G Pl ep +
  MMETSP0890-20130614|5595_1 177 RLKAKDTPKLSIPDTYpHGFCFAIYGSGSVCGE--PLTQNEVLVFGgNGDSLTFEADSDDFEVFVGSGLPLPEPWI 250
                 55555555555555542789*************..5*************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.95
# Mc/sec: 729.00
//
Query:       MMETSP0890-20130614|5594_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.85
# Mc/sec: 696.35
//
Query:       MMETSP0890-20130614|5598_1  [L=1283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-42  144.6   0.0    1.2e-41  142.5   0.0    2.0  2  PF03097.13 BRO1-like domain
    3.1e-06   26.2   8.7     0.0045   15.8   3.7    2.6  2  PF13949.1  ALIX V-shaped domain binding to HIV


Domain annotation for each model (and alignments):
>> PF03097.13  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   1.8e-45   1.2e-41      11     337 ..       7     480 ..       2     488 .. 0.89
   2 ?   -3.9   0.2      0.55   3.7e+03     247     303 ..     703     736 ..     680     771 .. 0.49

  Alignments for each domain:
  == domain 1    score: 142.5 bits;  conditional E-value: 1.8e-45
  PF03097.13  11 kevdlskpLkdyIlety.gedsssyeddlaelnklRqaavtps..srdesglel.........................llrYyaqLellekrfpdrslkveFtWydal.............................dtgsplaqrslafEkasvlFnlaalysqiaasqnrssdeglkaAvkyfqrAagaFeylkenflhapse......DlspetlkflvklmlAqAqecllekail.dkkkdsliaklaaqvaelYeealealqespvktg..............................................................................ipkewaklvqlKaeyfkAlahyyqalal.....eekkkyGeaiarLqeAlellkealklakkc..kskselledlkelkdrikekleeaekdNdfiyheevpdeveltsikkaalvkalpine 337
                 ++v+++k + + ++e + + ++s y+  l+ +++ R+aa ++     +++gl++                         l rY   L  +e+r   +      +W da                              +  +++ q  l +E+ s+l+nla+  +  +a  +r s++g++aA+ +fqrAag+F+yl++  +++ s       D +p+ l + ++  lAqAq c++ekai+ ++ ++ ++aklaaq+a +Y  a +al + +   g                                                                                + wa +++++a  f+A++ +  ++++     ++ + yG ++  L++    +++al  a+    +++ e     ++l + + ++++ +e+dNd iy e+ p+ +el+ + +++l+k++++++
  MMETSP0890-20130614|5598_1   7 EKVEFVKIVGKWVEEEFgEGEASRYRVRLRSVDTARNAALEAIaeLVKQQGLAAeavgqrtqvnelsndgeanerllkpLRRYAFELLSIERRTECDLS--GISWQDAWpkeetssssfasggkrllaalkkksndnfTAYNTVVQGGLSLERWSLLYNLACAETIAGAGLERGSEQGIRAACRHFQRAAGIFSYLRKSAQNQTSSeissqrDSTPAALLIAENTALAQAQACFYEKAIAsEQVNAGVVAKLAAQAAAYYWRARAALPTPSGLVGsnledtsrtppttsdtpflppgqttdtmndpvlvsstvsstqherehfpslqtqrslimkqwprapeyvektssklteAHEAWAIHLEFQARCFEAASALWSSRKIgqdasNSGNGYGLQLSWLRRCGRWCSSALIVAELDgsRVTAEAARGATGLREHAAAQFSALERDNDTIYRERLPEDNELPLVHGVPLAKPAKPES 480
                 5788888888889999955566669999999999998888765554555555557888888888888888888888888***************65554..69******999999999999999999999776655443444999999***************************************************5555555466678****************************77*********************88888887766688888888899999***********************************************9999999999998887777***************************999999*********************96655548899999999*********************************************98875 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.55
  PF03097.13 247 lal.......eekkkyGeai...........arLqeAlellkealklakkckskselledlkelkdrikekleea 303
                 ++        ++++++Ge++           +                                         ++
  MMETSP0890-20130614|5598_1 703 MERhrgnqspQKTQSVGEEVtlavaecraalT-----------------------------------------RL 736
                 32233333345555555555444444443331.........................................22 PP

>> PF13949.1  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.7   6.5e-07    0.0045       6     159 ..     577     739 ..     573     762 .. 0.83
   2 !   10.8   0.0   2.2e-05      0.15     209     282 ..     845     918 ..     808     920 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.5e-07
                 ---HHHHHHHHHHH.H-.---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS.......-HHHHCHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHTSSHHHHHHHS------SSG--.-HHHHHHHHHHHHHHHHHHH CS
   PF13949.1   6 glpesllekaeelr.se.ggiesleeslddldelkqavesileeikeqLdeeesedeklrakygerwtrs.......psseltaelreelrkyrealeeAsesDsqlrskleeieedlelLsspeeeleaslpssspeksdev.seqikrlrelleklnelkae 159
                  lpesl ++a+e + ++  + +sl+ +  +l+  ++++   +ee+ ++    e  d+   ++ ++r +r        +ss+ ta+ r+elr+++e  +  +++D+ l  +l++ e  ++ L++ +e +e+   ++sp+k+++v +e+  ++ e+   l +l+a+
  MMETSP0890-20130614|5598_1 577 ALPESLTRRAAEAMpDQtPAEQSLRGAYGRLESARSKALVAIEEAAKIVLPNEDNDSIHDTQASTRLSRMlgipdaeDSSPKTAKQRQELRELKEQTSLGAKTDAALMARLDDAE-VVASLAALDEAMERHRGNQSPQKTQSVgEEVTLAVAECRAALTRLRAN 739
                 589999998888876666889********************************************************************************************86.666666667778887788888888888555555555555555555554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.2e-05
                 HHHHHHHH---HHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH CS
   PF13949.1 209 leqniskQesllkelkeaneeflqdkkskyekkerekvlqrleeaydkykelssnlekglkFYndLlkileslr 282
                  ++  +kQ +l+++l +a  e++ + + +++++   ++l r ++   + ++l   l++g +FY +L+++++ l+
  MMETSP0890-20130614|5598_1 845 AQACAEKQHELVEALAAARHECSAAARRDSAARAARDALTRVADGARNMEQLALSLAEGASFYLELQRRAHALA 918
                 566679****************99999999999999********************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:01.59
# Mc/sec: 1933.66
//
Query:       MMETSP0890-20130614|5596_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-67  225.4   0.0    5.7e-67  225.2   0.0    1.0  1  PF03102.9  NeuB family
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.035   13.8   0.0    1.7  1  PF02557.12 D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> PF03102.9  NeuB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0   8.3e-71   5.7e-67       1     237 [.      10     252 ..      10     256 .. 0.95

  Alignments for each domain:
  == domain 1    score: 225.2 bits;  conditional E-value: 8.3e-71
                 HHHHHHH----EEEEEE--HHHH--GGGGG--......---S-HHHHHHHH---HHHHHHHHHHHHH---EEEEEE-SHHHHHHHHHHT-S-EEE----TT-HHHHHHHHT.----EEEE-----HHHHHHHHHHH...HH----EEEE-----SS--GGG------HHHHHH-T...SB---B--SSSSTTT---------EEEEEB-S-TT-----GGG-B-HHHHHHHH---HHHHHH-- CS
   PF03102.9   1 lieaAaeagadavKfQtfkaeelvskeakkaeyqkknkeeeesqlellkklelseeehkelkeyckekgieflstpfdlesvdfleelgvpayKiaSgeitnlpllekvak.tgkpvilStGmatleeieeavevl..keagkeklvllhCtseYPapledvnLraiktlkeafg...vkvGySDHtlgieaaiaAvalGakviEkHftldrnlegpDhkaSlepeelkelvkeirevekalg 237
                 l++ A++aga+++KfQ++ a+el+++e+ +a     +++ + ++ e+++ le+s+e+h +l++y ke+gie+ ++++d +s++ + e+ ++++K++S+ ++++++l+ + + ++ +v++StGm+t +eie++v+++  +++ k++l++++Cts+YP+p++dv++ ++ +l+e++g    ++ +S+H+lgi+++iaA++lGa++iE+Hft dr+++g+Dh+aSlep+ l ++++++ ++++al 
  MMETSP0890-20130614|5596_1  10 LMKLAKDAGAQYAKFQKRCAKELLTPEQYSAPHPVPHNAYGATYGEHREFLEFSKEQHMALHAYGKEIGIEWATSVWDVTSAREMIEIPCEFLKVPSACNNHFDMLKVLRDeFNGDVHVSTGMTTKKEIEDVVQFFeaTNQAKSRLIIYNCTSGYPVPFKDVCMLELVRLQEQYGnriKEFAFSGHHLGIAIDIAAYTLGASWIERHFTKDRTWKGTDHAASLEPAGLGKMCRDLVATHQALS 252
                 5789************************99999999998889*******************************************************************987999*********************776788899*****************************8564445*********************************************************99986 PP

>> PF02557.12  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.2e-06     0.035      64      98 ..     193     227 ..     180     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.2e-06
                 -GGG---EEEEEEE----E--HHHHHHH---B--- CS
  PF02557.12  64 SeHqtGlavDlglktndgiklevsfekaeafkwlk 98 
                 S H++G a+D++++t    ++e +f+k + +k + 
  MMETSP0890-20130614|5596_1 193 SGHHLGIAIDIAAYTLGASWIERHFTKDRTWKGTD 227
                 99*************999*******9999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 980.00
//
Query:       MMETSP0890-20130614|5599_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00028   20.3   0.5     0.0034   16.8   0.0    2.2  2  PF02156.10 Glycosyl hydrolase family 26


Domain annotation for each model (and alignments):
>> PF02156.10  Glycosyl hydrolase family 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.5e-07    0.0034     175     234 ..     131     192 ..     124     215 .. 0.86
   2 ?    1.4   0.0     0.012   1.6e+02     168     244 ..     274     339 ..     261     359 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.5e-07
                 HHHHHHHHHHHHHHHHHCT----SEEEE---BTTSS-T..CCC-----S-SEE-EE---S-G CS
  PF02156.10 175 rpeaykklwkllyerlvdtrglnnliwvyspdnsrdva..eafyPgdeyvDivglDiYaeda 234
                  p+ yk +++ +   l++t  ++ + + +   n+++ a  ++++Pg++ vD vgl i+++ +
  MMETSP0890-20130614|5599_1 131 DPKVYKAAFRNIATSLRNTDNIETVWHSWCFPNTWQSAkfSEWWPGSDVVDWVGLSIFQQGY 192
                 699**********************99999888887652269***************99855 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.012
                 ----STCHHHHHHHHHHHHHHHHHCT----SEEEE---BTTSS-TCCC-----S-SEE-EE---S-GCC-HHHHHHH CS
  PF02156.10 168 WGakgyerpeaykklwkllyerlvdtrglnnliwvyspdnsrdvaeafyPgdeyvDivglDiYaedaassadaynel 244
                 WG++   r e y +l kl    + +   ln   +  s +++ d+ +     d+y+Di  +  Y +   ++a+ ++++
  MMETSP0890-20130614|5599_1 274 WGDT---RLEHYPQLAKLWATNILH---LNS--FSLSSQQNFDKPSTASLDDDYIDIANEQNYDD---QQAGSFSSI 339
                 5555...466666665555444433...333..23455555677777777899********9998...445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.60s 00:00:01.21 Elapsed: 00:00:01.08
# Mc/sec: 1060.61
//
Query:       MMETSP0890-20130614|5605_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-61  201.4   1.7    4.1e-20   71.1   0.0    4.1  4  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-10   2.6e-06      10      46 ..      22      67 ..      15      86 .. 0.68
   2 !   36.2   0.0   2.4e-13   3.3e-09      47      92 ..     143     188 ..     131     191 .. 0.90
   3 !   63.8   0.0   5.8e-22     8e-18       8      95 ..     198     283 ..     193     284 .. 0.89
   4 !   71.1   0.0     3e-24   4.1e-20       5      95 ..     291     385 ..     287     386 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.9e-10
                H----HHHC.CHHHCHHHHHHHHHHH........-SS--GCGS--- CS
  PF00153.22 10 laGaiAgai.aalvttPldvvKtrlq........ksaasasskykg 46
                la+a+Aga+ +alv+tP+dvvKtr+q        + +++ +++ ++
  MMETSP0890-20130614|5605_1 22 LASACAGALlTALVVTPFDVVKTRMQmmrsdeigSGTSGINQSSSS 67
                56777777659***************88777665333333333344 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 2.4e-13
                 -HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22  47 ildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 +l++l +i ++eG rgly G++p+l+  vp++a++f++y+ l++++
  MMETSP0890-20130614|5605_1 143 TLNTLTYIARTEGARGLYAGIGPTLVMAVPNTALYFAAYDELRSHF 188
                 678899***********************************99887 PP

  == domain 3    score: 63.8 bits;  conditional E-value: 5.8e-22
                 HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---.GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
  PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGi.rglyrGllpnllrvvpaaaikfvtyetlkkllskk 95 
                   +aGa A ++aa++++P+++++t+lq   a ++++  + ++ l+k+++++Gi ++l+rGl+p+l r+vp +ai+++ty+++ + l++k
  MMETSP0890-20130614|5605_1 198 PGIAGASARIVAATAVAPFELARTQLQ---ALSPERRFTYINELSKLIRTQGIfTSLFRGLGPTLWRDVPFSAIYWGTYDSVYTRLRTK 283
                 569************************...66666666777888********87***************************99988765 PP

  == domain 4    score: 71.1 bits;  conditional E-value: 3e-24
                 HHHHHH----HHHCCHHHCHHHHHHHHHHH....-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
  PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlq....ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllskk 95 
                 ++  +++G+ Aga+aal+ttP+dvvKtr +      a+s ++ + +++  l +i ++eG+ +l++G +p+ll+v+pa ai+++tyet k+l+ ++
  MMETSP0890-20130614|5605_1 291 LATAFTSGLSAGALAALLTTPFDVVKTRRMvqshIGAPSTNNLNFSTVTLLAHIARNEGPSALFSGSIPRLLKVAPACAIMIATYETAKDLFARH 385
                 567899**********************9987766666666777788888*****************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.54s 00:00:01.07 Elapsed: 00:00:00.95
# Mc/sec: 1006.47
//
Query:       MMETSP0890-20130614|5607_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-16   58.0  27.2    6.8e-16   57.6  18.8    1.1  1  PF05160.8 DSS1/SEM1 family
  ------ inclusion threshold ------
       0.04   13.3   5.7      0.052   13.0   4.0    1.2  1  PF11163.3 Protein of unknown function (DUF2947)
       0.11   12.2   1.7       0.11   12.2   1.1    1.1  1  PF03998.8 Utp11 protein


Domain annotation for each model (and alignments):
>> PF05160.8  DSS1/SEM1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6  18.8   1.5e-19   6.8e-16       2      62 ..      33      92 ..      32      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 1.5e-19
   PF05160.8  2 kkeekklkllEeDDEFEdFpvedweeeeeekeaskelWeedWDDddveddFskqLkeelek 62
                +k+ k+++ +EeDDEFE+F   dw+e++e+++++ +lW++dWDDdd+eddF++ L+eel k
  MMETSP0890-20130614|5607_1 33 EKKRKDVEFFEEDDEFEEFVSADWDETKEDAQDE-RLWQDDWDDDDAEDDFCRHLREELAK 92
                57789999*******************9999997.************************98 PP

>> PF11163.3  Protein of unknown function (DUF2947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.0   1.1e-05     0.052      47      82 ..      44      79 ..      33      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
   PF11163.3 47 ksseadkfskkdWaakekawleeekWqkaWdsddee 82
                + +e ++f + dW + ++  ++e  Wq+ Wd+dd+e
  MMETSP0890-20130614|5607_1 44 EDDEFEEFVSADWDETKEDAQDERLWQDDWDDDDAE 79
                5677899*************************9975 PP

>> PF03998.8  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.1   2.4e-05      0.11     119     162 ..      31      71 ..       3     100 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.4e-05
   PF03998.8 119 ksaalnkhivFvddeeeqksfkpakefdteeeeldekenrpkke 162
                  +++++k + F+++++e+++f +a++ +t+e+++de+  +   +
  MMETSP0890-20130614|5607_1  31 GEEKKRKDVEFFEEDDEFEEFVSADWDETKEDAQDERLWQ---D 71 
                 3334479999****************88888887776544...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       627  (0.0458602); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 379.73
//
Query:       MMETSP0890-20130614|5611_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-12   45.5   1.1      1e-08   34.5   0.0    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0095   15.4   0.2      0.011   15.2   0.1    1.1  1  PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   5.7e-05      0.39      29      40 ..       4      15 ..       3      16 .. 0.91
   2 !   34.5   0.0   1.5e-12     1e-08       2      40 ..      18      56 .]      17      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.7e-05
                HHHHHHHHHHHH CS
  PF00514.18 29 qeeAawALsNLa 40
                +e+Aa++L+NLa
  MMETSP0890-20130614|5611_1  4 KENAAGVLRNLA 15
                69*********9 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 1.5e-12
                HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  2 penkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                + nk ++  aGa+ pLv+LL+sg   ++  Aa+AL+NLa
  MMETSP0890-20130614|5611_1 18 DYNKVIIAGAGAISPLVNLLTSGTAVTKGKAAGALWNLA 56
                66899999******************************8 PP

>> PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.6e-06     0.011      23      59 ..      16      52 ..       4      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.6e-06
                ------EEEEE---GGGGS-TT-TTTTTT-------E CS
   PF08545.5 23 sgaaknvLvvgaetlsrildwkdrstavlfGDGAgAv 59
                 + +++v + ga ++s +++   + tav+ G +AgA+
  MMETSP0890-20130614|5611_1 16 VNDYNKVIIAGAGAISPLVNLLTSGTAVTKGKAAGAL 52
                4579*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:01.30
# Mc/sec: 103.23
//
Query:       MMETSP0890-20130614|5618_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       705  (0.0515652); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 637.90
//
Query:       MMETSP0890-20130614|5616_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-16   59.3   4.9    1.5e-06   27.7   0.0    3.2  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   2.3e-06     0.032      11      73 ..      51     114 ..      42     129 .. 0.78
   2 !   19.0   0.0   5.3e-08   0.00073      10      94 ..     149     226 ..     140     228 .. 0.81
   3 !   27.7   0.0   1.1e-10   1.5e-06       4      92 ..     239     324 ..     236     328 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-06
                 ----HHHCCHHHCHHHHHHHHHHH-SS--GCGS-.---HHHHHHHHHH--.....-GGGG---HHHHHH CS
  PF00153.22  11 aGaiAgaiaalvttPldvvKtrlqksaasassky.kgildalkkiykeeG.....irglyrGllpnllr 73 
                 +Ga++g++  l +  l  ++t +       + +y +g+l+a++ +yk  G     i  +yrGl+p+l++
  MMETSP0890-20130614|5616_1  51 SGAAGGVAMGLNILCLMWLRTTVN-----YQYRYgTGTLSAIGALYKDGGgglkgIARFYRGLVPALMQ 114
                 566666666666666666777776.....555666**************999999***********996 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 5.3e-08
                 H----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22  10 laGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                 +  ++++a  +l+ +P+d+ Kt +q      ++  kg+     k + e+G+  ly G   +++ +++    +f+ty+tl + + k
  MMETSP0890-20130614|5616_1 149 AFCSFSAASWRLFLMPIDTWKTTMQ------TEGAKGLALL-MKKIGEKGPIVLYNGGYGAVVANMVGYYPWFATYNTLEEKIPK 226
                 4557788888999************......4555666655.5556788*****************************9998876 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 1.1e-10
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG.---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirgly.rGllpnllrvvpaaaikfvtyetlkkll 92 
                 ++++++l G +A a++++  + + vvK+  q    ++s +  + ++a k+++ ++G++gl  rGl+++l+ + ++ a+   + +++  ll
  MMETSP0890-20130614|5616_1 239 KLARRALLGFCASAVSDTTSNSIRVVKVYKQ----THSDPSITYIGAAKEVIAKDGVLGLLgRGLGTKLIANGIQGAMFSILWKSIEPLL 324
                 677899*************************....999999****************99766*************999887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.95
# Mc/sec: 827.37
//
Query:       MMETSP0890-20130614|5620_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-17   62.6   0.0    4.1e-17   62.3   0.0    1.1  1  PF01105.19 emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> PF01105.19  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0     3e-21   4.1e-17      61     182 .]      57     188 ..       2     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 3e-21
  PF01105.19  61 segdfsftalesgeykiCfdnsfstksskkvsldievgseakd...........ykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvvyLkrfFk 182
                     +s++a+e g y++C++ns+s++ +  v+ld+++ ++ +d            ++ ++++++ +l +++  l   l  ++++q   r+r + +r++n + +  +v  s+l+++v v+ +++q++++++ F+
  MMETSP0890-20130614|5620_1  57 P-TTISISAKEGGAYRACVENSHSHFDDEVVTLDWRTIASGNDgdedelpiallHDSKDTTSSVADLARRVVALRADLATLREKQARERRRLAHHRAINDDSHISIVEGSLLETAVYVISSLFQIIFVRNWFQ 188
                 2.38999999***************************65555566678899995555666999*******************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.75
# Mc/sec: 642.22
//
Query:       MMETSP0890-20130614|5626_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 438.66
//
Query:       MMETSP0890-20130614|5633_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-25   87.7   9.2    3.9e-22   77.8   1.9    2.3  2  PF14312.1 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   3.2e-06     0.044      18      49 .]       1      23 [.       1      23 [. 0.84
   2 !   77.8   1.9   2.8e-26   3.9e-22       1      49 []      32      80 ..      32      80 .. 0.97

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-06
   PF14312.1 18 FGssVaisgdtavVGAygdddngtnsGsaYvf 49
                FG+sVa+ ++++vVG            saYvf
  MMETSP0890-20130614|5633_1  1 FGTSVALYETRIVVGGQ---------DSAYVF 23
                9********99****77.........456665 PP

  == domain 2    score: 77.8 bits;  conditional E-value: 2.8e-26
   PF14312.1  1 wteqaKLtAsDgaagDyFGssVaisgdtavVGAygdddngtnsGsaYvf 49
                w+++aKL+AsDgaa+D+FG+sVai ++++vVGA+gdd    +sGsaYvf
  MMETSP0890-20130614|5633_1 32 WSQTAKLVASDGAADDWFGRSVAIYETRIVVGAHGDDEVDRESGSAYVF 80
                **************************99**********8889******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:01.09
# Mc/sec: 208.86
//
Query:       MMETSP0890-20130614|5628_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.80
# Mc/sec: 1012.46
//
Query:       MMETSP0890-20130614|5634_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:01.55
# Mc/sec: 71.12
//
Query:       MMETSP0890-20130614|5640_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-28   97.1   0.1    4.1e-23   81.2   0.1    2.2  2  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.1     3e-27   4.1e-23       1     312 [.     101     434 ..     101     474 .. 0.82
   2 !   14.0   0.0   7.6e-07      0.01     368     408 ..     477     518 ..     469     530 .. 0.88

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 3e-27
                 EHHHHHHHHHHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTT.ECC..............S-EECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTS...EEEEES-.TTCCHHCTTTHHHHTTT-EEEEESSCCT..T-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.......CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH..CCH--- CS
  PF00501.23   1 TYreldervnrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivr.tdk..............eedsvgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpdd...rvlsllp.lhfdgsilellaplllGatvvlvspedl..kdpalllddiekykvtvlalvptvlelllkaiek.......kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdee.tkpgsiG 312
                 +Y+e+ +r+ + a+ L+   + +g   a+l+  ++   i+++a+  +G ++v l+p+l+ae la +l++ e ++    + l  ++l+a+ + ++++ +  ++                  e+     +        ++   ++  +e+++ ++  +i++TSGtTG PK  +++ + ll +++ + ++   +       +ls+lp +h +g+ +++++ ll+ +++ +         + +lll++   ++++ l +v    e+l +            ++ l+s++ + +gg++ls+++++ l++a    ++++ YG tE +g+v ++l + ++ +k  s  
  MMETSP0890-20130614|5640_1 101 SYAEFAARCAATASRLTV--IVKGRATAMLVHATVPAHIVIVALSALGQAAVLLNPRLRAEVLATLLSKLEESCGCLVTGLSFRALAARVAPAVNSLINAKTaL-LlgindidlhldtthEC--LLPTGATSKVPPKGWWVPKSDHETTENEQGTVIMFTSGTTGAPKPMIISSKMLLKSAHRMWRYESQRGLTgdsGTLSFLPlFHMMGLAHNFCLNLLSSGKLLVHAAAASmpLTLGLLLEAAPTLQPSQLESVAVTAEQLSEMLSVggeiardIRSRLGSVKCFKIGGSKLSRRVVDTLASAS--LPVLEHYGSTELCGYVLAALTPSKNkKKQQSLQ 434
                 79************9984..667999999999***************************************999999999999999888888888777776640.25555678888765433..3333333333333333444444555556899************************999998877666544557*******99*******************998888777899*****************************988******99***************************99..9**************999887777654444444 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.6e-07
                 E---EEEE-TT--EEEE--GGGEEE--.--EEEHHHHHHHHH CS
  PF00501.23 368 rTGDlgrldedGyleiiGRkkdqikir.GeniepgeiEsall 408
                  TGD+ + ++ + +++  R++ ++ ++ Ge +ep+ iE+ +l
  MMETSP0890-20130614|5640_1 477 ATGDIFVETARNKFTFRSRVDGMLVLGsGEMVEPTAIEATVL 518
                 6*************************77**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:01.00
# Mc/sec: 1516.89
//
Query:       MMETSP0890-20130614|5645_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.43s 00:00:01.25 Elapsed: 00:00:00.83
# Mc/sec: 1339.65
//
Query:       MMETSP0890-20130614|5654_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-07   28.3   0.4    1.3e-06   27.7   0.3    1.2  1  PF00520.26 Ion transport protein
  ------ inclusion threshold ------
        0.1   11.8   0.0       0.23   10.6   0.0    1.5  1  PF08412.5  Ion transport protein N-terminal


Domain annotation for each model (and alignments):
>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.3   1.9e-10   1.3e-06       1      84 [.     397     495 ..     397     507 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.9e-10
                 XXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF00520.26   1 ileyvftiiftlemllkiialgfkl...........kftylrdpwnilDflvvlpslvslilrllnkas........gllavlrllrvlRllrllsrieglrt 84 
                 i+e++ +++f+ + +l++++ ++ +           +++ylr+++  +D+++ +p +v+li   +   s        +    +rllr+ Rllr +++++ +++
  MMETSP0890-20130614|5654_1 397 IFEWCLDAFFISDLILNFRTGYLDSrgrivmnpnrcAMHYLREWFI-VDLISSIPPIVDLINLATRGTSaytgtdatS---GTRLLRIGRLLRGFKLVRIFKV 495
                 6899***************999988******************999.**************977776669****6551...5555555555555555553333 PP

>> PF08412.5  Ion transport protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.3e-05      0.23      35      70 ..     352     387 ..     328     389 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.3e-05
   PF08412.5  35 GvwiihPysdfrfYwdllmllllvgnliilPvgitF 70 
                    +i P s+ r+ wdl + l +   +i++P ++ F
  MMETSP0890-20130614|5654_1 352 SSCMINPHSTWRVCWDLAIALAVGYLVILIPYQLGF 387
                 4568*************9877666667789998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       955  (0.0698508); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.98
# Mc/sec: 1266.65
//
Query:       MMETSP0890-20130614|5655_1  [L=847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-38  131.7   1.1    4.4e-38  130.5   0.8    1.6  1  PF00441.19 Acyl-CoA dehydrogenase, C-terminal domain
      2e-31  109.4   0.1    3.6e-31  108.5   0.1    1.4  1  PF01636.18 Phosphotransferase enzyme family
    2.3e-15   56.8   3.3    3.1e-15   56.4   0.7    2.2  2  PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
    1.3e-11   44.9   0.1    5.5e-11   42.9   0.0    2.1  1  PF02771.11 Acyl-CoA dehydrogenase, N-terminal domain
    2.1e-11   43.0   0.0      5e-11   41.8   0.0    1.6  1  PF02770.14 Acyl-CoA dehydrogenase, middle domain
    7.1e-08   32.1   0.0    1.3e-07   31.2   0.0    1.4  1  PF01633.15 Choline/ethanolamine kinase
    4.9e-06   25.8   0.0    8.8e-06   24.9   0.0    1.3  1  PF02958.15 Ecdysteroid kinase
     0.0055   15.2   0.0      0.009   14.5   0.0    1.2  1  PF07914.6  Protein of unknown function (DUF1679)
     0.0082   15.6   0.0      0.019   14.4   0.0    1.5  1  PF07210.7  Protein of unknown function (DUF1416)


Domain annotation for each model (and alignments):
>> PF00441.19  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.8   2.9e-41   4.4e-38       1     147 [.     686     834 ..     686     837 .. 0.98

  Alignments for each domain:
  == domain 1    score: 130.5 bits;  conditional E-value: 2.9e-41
                 ---...-HHHHHHHHHH--------HHHHHHHHHHHHHH-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTS-..HHHHHHHHHHHHHHHHHHHHHHHHH---GGGBTTSSHHHHHHHHTTTTT-------HHHHHHH CS
  PF00441.19   1 gkGfavametlnheRlliaaaalglarraleealeyakqrkafgkplidfqlireklaemaaeleaarllvyraaealdagkpd..saeaslaKllaselaqevadeamqllGgrGyaeeyplerlyrdarvlrigeGtseiqrniiar 147
                 g+Gf++a+ +l  +R++++++a+g+++rale + +++ +r+afgkp+  + +i++ +a+ ++++++arllv  +a+ +d+++++  +++++++K+ ++++a++v d++mq++Gg G+++++pl+++y +arvlr ++G++e+++ +ia+
  MMETSP0890-20130614|5655_1 686 GRGFDIAQARLGPGRVHHCMRAIGACERALELTKHRIATRTAFGKPISHHGSIQHDIANARIDIDQARLLVQSCAAVIDEKGNKeaRKQIAMIKVAVPRMACRVLDSLMQMWGGLGLSTDTPLAHFYAQARVLRQADGPDEVHLATIAK 834
                 79****************************************************************************99999999*************************************************************98 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.1   2.4e-34   3.6e-31       2     210 ..      64     297 ..      63     324 .. 0.85

  Alignments for each domain:
  == domain 1    score: 108.5 bits;  conditional E-value: 2.4e-34
                 EEEEE--SSEEEEEEEETT.TEEEEEESSC...CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT.....CSHHHHHHHHHHHHHHHHHHHHHS--T........TSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHH.HHHHHHHHHHC..........SS--EEB-SS-SGGGEEEETTTTEE.EE---TT-BBE-TCHHHHCCCTC CS
  PF01636.18   2 vrelsgGasnrtyrvttgagryvlrrarpa...raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler.....klnarqlpallealaellaalhqadpa........adpladflapyltllrllesataalvasellelleeleer.vlaalaallpg..........aeppvllHgDlhpgNllvdpddgrv.gviDfedaglgpplyDlasllrr 210
                 vr++s G+sn+ty+++ +++ +v+r  + +   r a ++ re++l+ lL+ +++p+P  l +++d d + + f  ++yv+g+++ +     ++n ++++a++  +a   a lh+a  +         ++++ +l+   +l+r++  ++++++ ++ +   +e +++ vl+++ al  +           + p++ HgDl+ +N+++d +++rv +++D+e+a+ g+p+ Dl +l++ 
  MMETSP0890-20130614|5655_1  64 VRQFSHGQSNPTYILRWPNRSLVVRKQPSGsllRGAHDVTREYRLATLLRPLDVPAPNALVLCEDTDIIDTKFWCYDYVEGRHFKDaylgeTNNLSDREAIYISAAKCAATLHSAKLEttalqyalGRGPDEPLKLGNYLARQVRTWQKQYQSADAKL--GESTSQyVLDHCIALSEKidnykdqvdeRQVPCIAHGDLRCDNMIFD-TENRVvALLDWELATSGHPVSDLSYLAMP 297
                 89****************************8888888888***************************************************9***********************8664666666677777888888999999999976555544444..44555566666666666666666667557778888************.889999*******************9954 PP

>> PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.92   1.4e+03      28      56 ..     152     180 ..     139     189 .. 0.79
   2 !   56.4   0.7     2e-18   3.1e-15       4     126 ..     704     818 ..     701     820 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.92
                 S----B----HHHHHHHHHHHHHHHHHHH CS
   PF08028.6  28 aaggaklaedpatqlrlAeaaaeldaAra 56 
                  + +++l++++a+ +  A++aa l++A++
  MMETSP0890-20130614|5655_1 152 LGETNNLSDREAIYISAAKCAATLHSAKL 180
                 56788999*****************9987 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 2e-18
                 HHHH---HHHHHHHHHHHHTT-B-S----B----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTT---GGGBTT-HHHHHHHHHHH- CS
   PF08028.6   4 aavalGaargalaafierarervraaggaklaedpatqlrlAeaaaeldaAralleraaerlealadrgaevtpeeraearrdaalavelavaavdrlfeaaGgsalfkesplqRfwRDahaa 126
                 ++ a+Ga+++al+   +r ++r+   +g++++ +  +q+ +A a++++d+Ar+l+++ a+     +d++   ++e r+++++ ++ + ++a ++ d l++++Gg +l+++ pl  f+  a+++
  MMETSP0890-20130614|5655_1 704 CMRAIGACERALELTKHRIATRTA--FGKPISHHGSIQHDIANARIDIDQARLLVQSCAAV----IDEKG--NKEARKQIAMIKVAVPRMACRVLDSLMQMWGGLGLSTDTPLAHFYAQARVL 818
                 6779********************..**********************************9....55544..4589*************************************9998777775 PP

>> PF02771.11  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   3.6e-14   5.5e-11       5     113 .]     426     564 ..     423     564 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 3.6e-14
                 HHHHHHHHHHHHHHTTTTHHHHHHHT.-.........--..HHHHHHHHH---TSTTS-................TT-------.HHHHHHHHHHHHHH--TTCH.HHHHHHHCCHHHHHH---HHHHHHHHHHHHCSS CS
  PF02771.11   5 ealrdevrefaeeelapeaaewdeee.e.........fp..relwrklaelGllgitvp................eeyGGagld.alelalvleelaradaglav.algvhsslvapailrfGteeqkkkyLpklasge 113
                 ++l ++v++f++ee+ p +ae  e+  +         +p   +l  k++++Gl+++ +                 e+y G gl+ ++++a ++e  +   ++  v   +++++ +++++++fGt++qkk++L++l++ge
  MMETSP0890-20130614|5655_1 426 DELAKSVEAFIREEILPIEAELLEKSySssqeerwkpYPklDQLKAKAKAAGLWNLFFLqkeedsitsspyqlanEQYPGGGLSrLIDYACICEITGMSLLAPEVfNCSAPDTGNMEVLAAFGTDAQKKQWLKPLLAGE 564
                 6899***********998888743221133333444455333348888999*******99**********************888*************99888988889999999**********************98 PP

>> PF02770.14  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.3e-14     5e-11       1      46 [.     568     617 ..     568     623 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 3.3e-14
  PF02770.14   1 alalTEpg.aGsDvanlsTtArrdgdg.yvlnGtKwfisng..giadlal 46 
                 ++a+TEp+ a sD +nl+   + dgd+  ++nGtK+++s++  +++++a+
  MMETSP0890-20130614|5655_1 568 CFAMTEPAvASSDPTNLEASITDDGDDyLIINGTKHWTSGAmdPRCKIAI 617
                 9**************************99***********9455556555 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   8.9e-11   1.3e-07      61     182 ..     157     292 ..     131     299 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 8.9e-11
                 GGGS.HHHHHHHHHHHHHHTT---..............SS--SS-HHHHHHHHH-----TT--EE--TT----EE-HHHHHHHHHHHHHHHTT----EEEE-S------EEE-------EE---TT-EEEEHHHHHH CS
  PF01633.15  61 dlre.peilkkiakklaelHslel..............seskeskslwktiqkwlnkeaqtkqkkeskkkqlklinledlekeleeleklleekespvvfCHnDlqegNillnkeekklvlIDFEYasynyrafDlA 182
                 +l++ + i+   ak  a+lHs +l              ++ k  + l +++++w+++ +   +k  ++ +q  l  +  l +++++++  ++  ++  +++H Dl   N+++++e++ + l D+E a+    + Dl+
  MMETSP0890-20130614|5655_1 157 NLSDrEAIYISAAKCAATLHSAKLettalqyalgrgpdEPLKLGNYLARQVRTWQKQYQSADAKLGESTSQYVLDHCIALSEKIDNYKDQVD-ERQVPCIAHGDLRCDNMIFDTENRVVALLDWELATSGHPVSDLS 292
                 333313477889999***************************************66666667777778888888999999999999999994.45556889*************************99888887775 PP

>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   5.8e-09   8.8e-06     177     259 ..     207     294 ..     197     297 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 5.8e-09
  PF02958.15 177 lkeelpelekeaekleklke.nlferlaelve........enesefnvLnHGDlwvnNimfkydeegepedvilvDFQlsrygspalDLlyf 259
                 +++ +++++  ++kl + ++  +++++ +l e         +e ++  + HGDl + N++f ++++     v+l+D+ l+  g p+ DL+y+
  MMETSP0890-20130614|5655_1 207 VRTWQKQYQSADAKLGESTSqYVLDHCIALSEkidnykdqVDERQVPCIAHGDLRCDNMIFDTENRV----VALLDWELATSGHPVSDLSYL 294
                 433344444444555444441445555555556667877788899999*************999886....*******************97 PP

>> PF07914.6  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.9e-06     0.009     234     314 ..     218     295 ..     157     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.9e-06
   PF07914.6 234 eekveelvdiveeylkeililkkatnvskvlGikkv..lvhgDlwqaNiLfseeeegklklkkiiDyQlvslgnpaeDlvrll 314
                 + k+ e+++ +    + i+  +k++n ++ +  ++v  + hgDl   N++f +e+     + +++D+ l++ g p  Dl+ l 
  MMETSP0890-20130614|5655_1 218 DAKLGESTSQYVLD-HCIALSEKIDNYKDQVDERQVpcIAHGDLRCDNMIFDTENR----VVALLDWELATSGHPVSDLSYLA 295
                 45555555544333.3466677777777777775552278*************888....99*****************9875 PP

>> PF07210.7  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-05     0.019      22      70 ..     327     375 ..     322     390 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-05
   PF07210.7  22 vagayvRLLdssgeFtaevvtsatGeFrFfAapGtWtvRaLakkakgdr 70 
                 + + y + L++++e   +vv  a  +F  fAa G W++  ++++  + +
  MMETSP0890-20130614|5655_1 327 LIHEYTKSLNTDNETLRDVVDRALPHFELFAAVGYWRLASIVRGVYARA 375
                 55789999*****************************999998876644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.27u 0.38s 00:00:01.65 Elapsed: 00:00:01.04
# Mc/sec: 1951.65
//
Query:       MMETSP0890-20130614|5659_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-43  146.7   0.1    5.9e-43  146.4   0.1    1.1  1  PF04452.9 RNA methyltransferase


Domain annotation for each model (and alignments):
>> PF04452.9  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4   0.1   4.3e-47   5.9e-43       1     224 [.      22     250 ..      22     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 146.4 bits;  conditional E-value: 4.3e-47
                 EEE-HHHHHHHHTTTT-----EEEEEE---EEEEEEEEEEESSEEEEEEEEEEE---S-SSE.EEEEEE---HHHHHHHHHHHHH----EEEEEE-TT------HHHHHHHHHHHHHHHHHHHHHHT-SS--EE---EEHHHHHCHGGGCSEEEE-TT-SEBCCCSSHHHHHHHC-......EEEEE--------HHHHHHHHHCCSE......EEB-------HHHHHHHHHHHHH CS
   PF04452.9   1 vsltdeeahHlvkVlRlkegdeiklfdgdgkeylaeieeiskkkvevkilekeeenkeepek.itlaqalpkgdklelilqkatElGvseivplisersvvkldekkkdkklerwqkilieAaeQsgrtvlPevkepislkelleelkeadllilyeeekksleelsekkkelkev......kvlliiGPEGGfseeEiellkeagfk......pvsLgpriLRteTAalaalsalq 224
                 v+l+ ++++Hl +VlR+keg+e+++f  + +e+++++e   +++ +v ++++ ++++ ++ + i l++a++++++   +++katElGv+++ p+ ++++    +    ++   + + ++i+AaeQ++r+ +P ++++ +l+++l++ ++   +++ e+++++   l +   e++ +       ++++iGPEGGfs++E++l+k+  ++      p+sLg++iLR+eTAal al+++ 
  MMETSP0890-20130614|5659_1  22 VELNTNQLNHL-SVLRIKEGEEVRCFGANMGEWSGRLELMGRRRGRVVMESEIRAPQLKNARkIELCFAPLRKKRTSVLIEKATELGVTALRPIATQFT----QAAALASLGSHPHPAAIQAAEQCERLDVPILENVTRLSDFLDSNTTI--FVCLERQEDHVPHLLTVLLEKS-FeedvvdAAAVLIGPEGGFSDSELALFKQVTARpnstlvPISLGSSILRAETAALSALAIIL 250
                 57899******.*********************************999997766666555444************************************....55667777789999***************************988875..8888887777776666665543.347889**********************977642222228*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:01.07
# Mc/sec: 620.37
//
Query:       MMETSP0890-20130614|5660_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   38.6   0.0    4.1e-07   30.2   0.0    2.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     3e-11   4.1e-07       2     164 .]      26     128 ..      25     128 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 3e-11
                 ---EESS-B----EEEEECCCEEECCCCHH...............----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE....-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   2 rGvfAtedipkGefvceyvgelltddeaekaddagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNH....SCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                 rGvfAt+  ++ e++ eyvg++ t+d +                     ++                                                  +e +   ++ da  +g+  rf+N     S  pN+ +++   ++ p+ +l+ t+ I+ GeEl+ dYg
  MMETSP0890-20130614|5660_1  26 RGVFATRRWRPFEIIGEYVGQIKTPDVEGGF----------------VVALD------------------------------------------------PDEAPSQSLSLDADSYGNELRFVNDfrgvSQAPNVILSAATIQGLPTRILVCTKIIKRGEELLTDYG 128
                 9************888*************92................33444................................................799999**********************9999**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.66
# Mc/sec: 697.12
//
Query:       MMETSP0890-20130614|5662_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-28   99.0   0.2      2e-28   98.7   0.1    1.2  1  PF03928.9 Domain of unknown function (DUF336)


Domain annotation for each model (and alignments):
>> PF03928.9  Domain of unknown function (DUF336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.1   1.5e-32     2e-28       3     132 .]      48     180 ..      46     180 .. 0.95

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 1.5e-32
   PF03928.9   3 ltleaAeklgaaavaaaeeegvr.vtvavvdagGnllaflrmdgaalhsaeiaqrKaytaaslgtstselaealqqkpalrkgival.dkglvlfgGGvpik.vkgevvGaigVSGgseeeDeelAeagleal 132
                 l+l aA+++++ + ++++e g+  ++v+v+dagG+ +++lr d++   ++eia++Ka+ a+++g+s++++ ++l+++p + +++++  ++++v+++GGv+i   +g  +Ga+gVSG+++++De +A+ +++a+
  MMETSP0890-20130614|5662_1  48 LELIAARAIADGVLEKGREVGLLpLAVVVLDAGGKDVVVLREDNCGNMRCEIARGKANAALAMGMSSRQIRDRLKDRPFFIGALSDVsQGRFVPVPGGVLILdHNGTAIGAVGVSGDTSDKDEMCAIHAINAI 180
                 777899***************87799999***********************************************99999999999***************666699*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:01.08
# Mc/sec: 448.21
//
Query:       MMETSP0890-20130614|5667_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 826.11
//
Query:       MMETSP0890-20130614|5670_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-12   46.2   1.4    5.3e-09   35.5   0.2    2.2  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   3.5e-05      0.48      28      38 ..       2      12 ..       1      13 [. 0.96
   2 !   35.5   0.2   3.9e-13   5.3e-09       4      34 ..      20      50 ..      17      54 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.5e-05
                EEETTSEEEEE CS
  PF00400.27 28 sgSrDgtirlW 38
                ++S+D+t ++W
  MMETSP0890-20130614|5670_1  2 TASEDNTAKIW 12
                89********* PP

  == domain 2    score: 35.5 bits;  conditional E-value: 3.9e-13
                EEEEESSSSSEEEEEEESSSTEEEEEETTSE CS
  PF00400.27  4 katlrgHtspVtcvafspdgpllasgSrDgt 34
                + tl+gHt++Vt+++fspdg++ +++S+D t
  MMETSP0890-20130614|5670_1 20 LLTLSGHTNWVTDCDFSPDGTRAVTASDDET 50
                789*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:00.60
# Mc/sec: 251.62
//
Query:       MMETSP0890-20130614|5668_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-55  185.2   1.6    1.1e-54  185.0   1.1    1.1  1  PF13852.1 Protein of unknown function (DUF4197)


Domain annotation for each model (and alignments):
>> PF13852.1  Protein of unknown function (DUF4197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   1.1   7.8e-59   1.1e-54       3     203 .]      33     248 ..      31     248 .. 0.95

  Alignments for each domain:
  == domain 1    score: 185.0 bits;  conditional E-value: 7.8e-59
   PF13852.1   3 sslsqseiaeGlkeaLslgaekavselgkedGFlknaavkiplPeelqkvekllrkvglgklvdelekslNraAeaAvpeaapifvdaiksmtvtDakailqGgddAaTqylkkktstkLqaafkPivkkalekvgatkaykqlasky..................aslglvkkedadlekyvtqkaldglFsmiaeeEkkIRanpaarttdlLkkvfg 203
                 +s s+ ++++ + e L++g+e+av++l+  dGF+++++vkiplP+++   +++l+ +g+++ ++el ++lNraAe+Av  +++if  a++ ++++D+++i++G ddAaT+yl+++++++L ++fkP v++a+++vga++a+ +l s++                  ++lgl   +++dl++ v++kaldglF +i+e E+ +Ranp a+ +dl  +vf+
  MMETSP0890-20130614|5668_1  33 ESFSDGDLTQVILETLKKGIEEAVERLASADGFFGDEKVKIPLPDAVLRLQSVLEAAGQNEKANELSLALNRAAEKAVAISTEIFLHALSVLSLDDVRNIVAGTDDAATKYLEDSSRDDLFDKFKPLVNQATQDVGAADALRNLDSALdkgeetggifgmaadmvqNQLGL---DNFDLDEFVASKALDGLFIKIKEIEAHVRANPTAAASDLASQVFS 248
                 5678999999***************************************************************************************************************************************87788888888888776666666666...99*****************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 914.97
//
Query:       MMETSP0890-20130614|5673_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.55
# Mc/sec: 466.20
//
Query:       MMETSP0890-20130614|5675_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-37  124.0   8.2    1.3e-08   34.0   0.3    6.9  7  PF12799.2  Leucine Rich repeats (2 copies)
    4.9e-31  106.1  38.3    1.8e-09   37.0   0.7    5.3  7  PF13855.1  Leucine rich repeat
    2.1e-15   54.2  10.2        1.8    8.8   0.0   10.2 10  PF00560.28 Leucine Rich Repeat
    8.2e-11   40.1   8.8        2.9    8.3   0.1    9.2 10  PF13504.1  Leucine rich repeat
    1.2e-10   40.2  11.5        6.7    6.9   0.0    9.5 10  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.59   10.2   0.0    2.1  2  PF13415.1  Galactose oxidase, central domain
       0.11   12.1   0.0         14    5.4   0.0    2.6  2  PF13418.1  Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.2e-06     0.012      14      43 ..      89     117 ..      80     118 .. 0.89
   2 !   18.8   0.0   4.1e-07   0.00081       2      38 ..     122     157 ..     121     162 .. 0.92
   3 !   17.4   0.3   1.1e-06    0.0022       1      42 [.     165     205 ..     165     206 .. 0.97
   4 !   34.0   0.3   6.9e-12   1.3e-08       1      40 [.     207     245 ..     207     250 .. 0.94
   5 !   24.0   0.0   9.8e-09   1.9e-05       3      43 ..     255     297 ..     253     298 .. 0.90
   6 !   30.9   0.0   6.9e-11   1.3e-07       3      43 ..     280     319 ..     278     320 .. 0.94
   7 !   10.6   0.0   0.00015      0.29       3      36 ..     302     336 ..     300     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.2e-06
   PF12799.2  14 kdlppelanLpnLktLnLsnNpisdlsaLa 43 
                 + l++ l +L++L+ + L +N i d+s++a
  MMETSP0890-20130614|5675_1  89 TVLDG-LERLKKLRIIVLRSNLIADMSVIA 117
                 66899.********************9875 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 4.1e-07
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpisd 38 
                  Le++ L +N++ +l++ +  +p Lk L++s N i +
  MMETSP0890-20130614|5675_1 122 TLEHIELYDNQVRSLKG-VEACPHLKILDMSFNVIRS 157
                 59***************.***************9976 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 1.1e-06
   PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsaL 42 
                 t+L++L+L+ N+   +++ + +L+ L  L+L  N++ ++++L
  MMETSP0890-20130614|5675_1 165 TKLTELYLAANKFRTIEN-VDRLNELIKLDLGANRLREIPSL 205
                 79****************.********************998 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 6.9e-12
   PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdls 40 
                 +n ++L L +N+I+++++ l  L++L++L++++N++++l+
  MMETSP0890-20130614|5675_1 207 PNIKHLFLGKNRIESISG-LEALKDLRVLDVQSNRLTSLK 245
                 79****************.*******************96 PP

  == domain 5    score: 24.0 bits;  conditional E-value: 9.8e-09
   PF12799.2   3 LevLdLsnNnIk.dlppe.lanLpnLktLnLsnNpisdlsaLa 43 
                 L +L+L++N I  dl+++ l  L+ L t++Ls+N+i+ l+++a
  MMETSP0890-20130614|5675_1 255 LSELYLAHNAIGqDLSASdLEPLKALGTIDLSHNRITTLNPFA 297
                 568********659**966*******************99986 PP

  == domain 6    score: 30.9 bits;  conditional E-value: 6.9e-11
   PF12799.2   3 LevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsaLa 43 
                 L ++dLs+N+I+ l+p +a L  L+ L+Ls+N++ +l+a+a
  MMETSP0890-20130614|5675_1 280 LGTIDLSHNRITTLNP-FAPLHALEDLWLSYNQVPSLDAIA 319
                 7799************.********************9986 PP

  == domain 7    score: 10.6 bits;  conditional E-value: 0.00015
   PF12799.2   3 LevLdLsnNnIkdlppelanLpn..LktLnLsnNpi 36 
                 Le L+Ls+N++ +l++ +a      L  ++L++Np+
  MMETSP0890-20130614|5675_1 302 LEDLWLSYNQVPSLDA-IAAIVHlpLACIYLEHNPC 336
                 8999999999999999.8866655599999999986 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   7.5e-05      0.15       2      60 ..      99     154 ..      98     155 .. 0.89
   2 !   22.1   0.8   4.4e-08   8.6e-05       2      61 .]     166     219 ..     165     219 .. 0.93
   3 !   25.6   1.2   3.4e-09   6.6e-06       3      61 .]     189     241 ..     187     241 .. 0.91
   4 !   27.9   1.3   6.6e-10   1.3e-06       1      61 []     207     265 ..     207     265 .. 0.92
   5 !   37.0   0.7   9.4e-13   1.8e-09       3      61 .]     231     290 ..     229     290 .. 0.97
   6 !   28.9   0.2   3.2e-10   6.2e-07       2      60 ..     254     311 ..     253     312 .. 0.96
   7 !   19.2   0.0   3.4e-07   0.00066       3      59 ..     280     334 ..     278     335 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.5e-05
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 +L+ + L++N + +++  a +g + L+++ L +n   s+     + +p+L+ L++s N 
  MMETSP0890-20130614|5675_1  99 KLRIIVLRSNLIADMSVIAANGAT-LEHIELYDNQVRSLK--GVEACPHLKILDMSFNV 154
                 79**************87777665.**************5..5799**********995 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 4.4e-08
   PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +L+eL+L  N++++i+     +l+ L +LdL+ n+l +i++      p++++L+L  Nr+
  MMETSP0890-20130614|5675_1 166 KLTELYLAANKFRTIE--NVDRLNELIKLDLGANRLREIPS----LPPNIKHLFLGKNRI 219
                 8**************9..69*******************96....689*******99997 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 3.4e-09
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 L +LdL  Nrl++ip  ++   +n k+L L++n+++sis   ++ L+ Lr L++++Nrl
  MMETSP0890-20130614|5675_1 189 LIKLDLGANRLREIP--SLP--PNIKHLFLGKNRIESISG--LEALKDLRVLDVQSNRL 241
                 789************..444..9***************95..9999999********98 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 6.6e-10
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 pn+k+L L +Nr+++i+   ++ l+ L+vLd ++n+l+s+     ++  +L+eL+L +N +
  MMETSP0890-20130614|5675_1 207 PNIKHLFLGKNRIESISG--LEALKDLRVLDVQSNRLTSLKNAFSESQAHLSELYLAHNAI 265
                 89**************96..99999***************776667888**********87 PP

  == domain 5    score: 37.0 bits;  conditional E-value: 9.4e-13
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgNrl 61 
                 L++Ld+++Nrl+++ + + ++  +L +L+L +n++ + +s+  ++ L++L  ++Ls+Nr+
  MMETSP0890-20130614|5675_1 231 LRVLDVQSNRLTSLKNAFSESQAHLSELYLAHNAIgQDLSASDLEPLKALGTIDLSHNRI 290
                 99*************999999**************99*********************98 PP

  == domain 6    score: 28.9 bits;  conditional E-value: 3.2e-10
   PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                 +L+eL+L +N +  +++ + ++ l+ L ++dLs+n++++++p  f+ L++L+ L Ls+N+
  MMETSP0890-20130614|5675_1 254 HLSELYLAHNAIGqDLSASDLEPLKALGTIDLSHNRITTLNP--FAPLHALEDLWLSYNQ 311
                 8*********9999****************************..***************7 PP

  == domain 7    score: 19.2 bits;  conditional E-value: 3.4e-07
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp.eafkgLpsLreLnLsgN 59 
                 L ++dLs+Nr++++    F  l+ L+ L Ls+n   s+++  a+ +L  L  ++L++N
  MMETSP0890-20130614|5675_1 280 LGTIDLSHNRITTLN--PFAPLHALEDLWLSYNQVPSLDAiAAIVHL-PLACIYLEHN 334
                 567788888888887..588888888888888888777773356666.4555666555 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.7   1.4e+03       1      13 [.      99     111 ..      99     117 .. 0.83
   2 ?    1.7   0.0       0.2   3.8e+02       2      15 ..     123     136 ..     122     141 .. 0.87
   3 ?    3.8   0.0     0.039        77       1      13 [.     144     156 ..     144     164 .. 0.84
   4 ?    4.0   0.0     0.032        63       1      17 [.     166     182 ..     166     186 .. 0.87
   5 !    7.1   0.0    0.0033       6.4       2      17 ..     189     204 ..     188     207 .. 0.90
   6 ?    5.5   0.0     0.011        21       1      21 [.     208     227 ..     208     228 .. 0.87
   7 !    8.7   0.0   0.00096       1.9       2      20 ..     231     249 ..     230     251 .. 0.87
   8 ?    4.9   0.0     0.016        32       1      20 [.     254     275 ..     254     277 .. 0.84
   9 !    8.8   0.0    0.0009       1.8       4      20 ..     282     297 ..     279     299 .. 0.84
  10 ?    4.3   0.0     0.026        52       2      16 ..     302     316 ..     301     336 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.7
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 +L+++ L++N + 
  MMETSP0890-20130614|5675_1  99 KLRIIVLRSNLIA 111
                 69********775 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.2
                 ESEEEETSSBCBCH CS
  PF00560.28   2 LeeLdLsgNnltsl 15 
                 Le++ L +N++ sl
  MMETSP0890-20130614|5675_1 123 LEHIELYDNQVRSL 136
                 9********99875 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.039
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 +L++Ld+s+N + 
  MMETSP0890-20130614|5675_1 144 HLKILDMSFNVIR 156
                 79********665 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.032
                 TESEEEETSSBCBCHHH CS
  PF00560.28   1 nLeeLdLsgNnltslpp 17 
                 +L+eL+L  N++ ++ +
  MMETSP0890-20130614|5675_1 166 KLTELYLAANKFRTIEN 182
                 69********9999876 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.0033
                 ESEEEETSSBCBCHHH CS
  PF00560.28   2 LeeLdLsgNnltslpp 17 
                 L +LdL  N+l ++p+
  MMETSP0890-20130614|5675_1 189 LIKLDLGANRLREIPS 204
                 889**********998 PP

  == domain 6    score: 5.5 bits;  conditional E-value: 0.011
                 TESEEEETSSBCBCHHHHHHH CS
  PF00560.28   1 nLeeLdLsgNnltslppslsn 21 
                 n+++L L  N+++s++  l++
  MMETSP0890-20130614|5675_1 208 NIKHLFLGKNRIESISG-LEA 227
                 789***********997.665 PP

  == domain 7    score: 8.7 bits;  conditional E-value: 0.00096
                 ESEEEETSSBCBCHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppsls 20 
                 L++Ld+++N+ltsl + +s
  MMETSP0890-20130614|5675_1 231 LRVLDVQSNRLTSLKNAFS 249
                 9***********9987665 PP

  == domain 8    score: 4.9 bits;  conditional E-value: 0.016
                 TESEEEETSSBCB.CHHHH.HH CS
  PF00560.28   1 nLeeLdLsgNnlt.slpps.ls 20 
                 +L eL+L +N +  +l+ s l+
  MMETSP0890-20130614|5675_1 254 HLSELYLAHNAIGqDLSASdLE 275
                 699*********9889888776 PP

  == domain 9    score: 8.8 bits;  conditional E-value: 0.0009
                 EEEETSSBCBCHHHHHH CS
  PF00560.28   4 eLdLsgNnltslppsls 20 
                 ++dLs+N++t+l p + 
  MMETSP0890-20130614|5675_1 282 TIDLSHNRITTLNP-FA 297
                 79*********998.75 PP

  == domain 10    score: 4.3 bits;  conditional E-value: 0.026
                 ESEEEETSSBCBCHH CS
  PF00560.28   2 LeeLdLsgNnltslp 16 
                 Le L Ls+N++ sl 
  MMETSP0890-20130614|5675_1 302 LEDLWLSYNQVPSLD 316
                 899*******98854 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.8   7.4e+03       2       8 ..      96     102 ..      96     114 .. 0.66
   2 ?   -2.3   0.0       4.8   9.4e+03       3      16 ..     123     136 ..     121     137 .. 0.75
   3 ?    1.0   0.0       0.4   7.9e+02       1      11 [.     143     153 ..     143     157 .. 0.87
   4 ?    5.6   0.0     0.012        23       1      16 [.     165     180 ..     165     181 .. 0.88
   5 ?    4.6   0.0     0.025        49       3      17 .]     189     203 ..     187     203 .. 0.91
   6 ?    1.5   0.0      0.28   5.4e+02       1      16 [.     207     222 ..     207     223 .. 0.88
   7 !    8.3   0.1    0.0015       2.9       3      16 ..     231     244 ..     229     245 .. 0.93
   8 ?    3.5   0.0     0.058   1.1e+02       2      15 ..     254     267 ..     253     270 .. 0.84
   9 !    6.3   0.1    0.0069        13       3      16 ..     280     293 ..     277     294 .. 0.79
  10 ?    3.3   0.0     0.067   1.3e+02       1      13 [.     300     312 ..     300     325 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.8
   PF13504.1   2 nLkeLdL 8  
                 +Lk+L++
  MMETSP0890-20130614|5675_1  96 RLKKLRI 102
                 5888874 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4.8
   PF13504.1   3 LkeLdLsgnrLtsL 16 
                 L+   L +n+  sL
  MMETSP0890-20130614|5675_1 123 LEHIELYDNQVRSL 136
                 66667999998776 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.4
   PF13504.1   1 pnLkeLdLsgn 11 
                 p+Lk Ld s n
  MMETSP0890-20130614|5675_1 143 PHLKILDMSFN 153
                 79*****9988 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.012
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 ++L+eL+L+ n++ ++
  MMETSP0890-20130614|5675_1 165 TKLTELYLAANKFRTI 180
                 68*********99876 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.025
   PF13504.1   3 LkeLdLsgnrLtsLP 17 
                 L +LdL  nrL ++P
  MMETSP0890-20130614|5675_1 189 LIKLDLGANRLREIP 203
                 679*********998 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.28
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 pn k L L  nr++s+
  MMETSP0890-20130614|5675_1 207 PNIKHLFLGKNRIESI 222
                 68899********997 PP

  == domain 7    score: 8.3 bits;  conditional E-value: 0.0015
   PF13504.1   3 LkeLdLsgnrLtsL 16 
                 L++Ld+ +nrLtsL
  MMETSP0890-20130614|5675_1 231 LRVLDVQSNRLTSL 244
                 9***********98 PP

  == domain 8    score: 3.5 bits;  conditional E-value: 0.058
   PF13504.1   2 nLkeLdLsgnrLts 15 
                 +L eL+L++n + +
  MMETSP0890-20130614|5675_1 254 HLSELYLAHNAIGQ 267
                 799*******8764 PP

  == domain 9    score: 6.3 bits;  conditional E-value: 0.0069
   PF13504.1   3 LkeLdLsgnrLtsL 16 
                 L + dLs+nr+t+L
  MMETSP0890-20130614|5675_1 280 LGTIDLSHNRITTL 293
                 44569*******99 PP

  == domain 10    score: 3.3 bits;  conditional E-value: 0.067
   PF13504.1   1 pnLkeLdLsgnrL 13 
                 + L++L Ls+n+ 
  MMETSP0890-20130614|5675_1 300 HALEDLWLSYNQV 312
                 579********83 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.1   9.9e+03       1      14 [.      97     110 ..      97     115 .. 0.74
   2 ?    1.0   0.0       0.3   5.8e+02       3      15 ..     122     134 ..     121     141 .. 0.81
   3 !    6.8   0.0    0.0038       7.4       1      14 [.     142     155 ..     142     159 .. 0.91
   4 ?    4.7   0.0     0.018        35       1      14 [.     164     177 ..     164     182 .. 0.89
   5 ?    0.1   0.0      0.58   1.1e+03       4      14 ..     189     199 ..     186     202 .. 0.80
   6 !    5.7   0.0     0.009        18       2      21 ..     207     227 ..     206     230 .. 0.80
   7 ?    3.7   0.0      0.04        78       1      16 [.     228     243 ..     228     245 .. 0.87
   8 !    6.9   0.0    0.0034       6.7       3      18 ..     254     269 ..     253     281 .. 0.83
   9 ?    4.2   0.0     0.028        54       6      16 ..     282     292 ..     277     295 .. 0.80
  10 ?    3.9   0.0     0.034        66       3      15 ..     301     313 ..     299     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 5.1
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 lk+L+ + L +N i
  MMETSP0890-20130614|5675_1  97 LKKLRIIVLRSNLI 110
                 57788888888877 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.3
   PF13516.1   3 nLtsLdLsnNqig 15 
                 +L+++ L +Nq+ 
  MMETSP0890-20130614|5675_1 122 TLEHIELYDNQVR 134
                 699********85 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0038
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 +++L+ Ld+s+N i
  MMETSP0890-20130614|5675_1 142 CPHLKILDMSFNVI 155
                 9***********87 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.018
   PF13516.1   1 lknLtsLdLsnNqi 14 
                 +++Lt+L L  N++
  MMETSP0890-20130614|5675_1 164 CTKLTELYLAANKF 177
                 99*********986 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.58
   PF13516.1   4 LtsLdLsnNqi 14 
                 L  LdL+ N +
  MMETSP0890-20130614|5675_1 189 LIKLDLGANRL 199
                 789****9987 PP

  == domain 6    score: 5.7 bits;  conditional E-value: 0.009
   PF13516.1   2 knLtsLdLsnNqigd.eGlsa 21 
                 +n+++L L++N i +  Gl+a
  MMETSP0890-20130614|5675_1 207 PNIKHLFLGKNRIESiSGLEA 227
                 79***********87455555 PP

  == domain 7    score: 3.7 bits;  conditional E-value: 0.04
   PF13516.1   1 lknLtsLdLsnNqigd 16 
                 lk L++Ld+++N +++
  MMETSP0890-20130614|5675_1 228 LKDLRVLDVQSNRLTS 243
                 5789*********986 PP

  == domain 8    score: 6.9 bits;  conditional E-value: 0.0034
   PF13516.1   3 nLtsLdLsnNqigdeG 18 
                 +L++L L +N ig++ 
  MMETSP0890-20130614|5675_1 254 HLSELYLAHNAIGQDL 269
                 79***********986 PP

  == domain 9    score: 4.2 bits;  conditional E-value: 0.028
   PF13516.1   6 sLdLsnNqigd 16 
                 ++dLs+N i+ 
  MMETSP0890-20130614|5675_1 282 TIDLSHNRITT 292
                 89*******96 PP

  == domain 10    score: 3.9 bits;  conditional E-value: 0.034
   PF13516.1   3 nLtsLdLsnNqig 15 
                  L++L Ls+Nq+ 
  MMETSP0890-20130614|5675_1 301 ALEDLWLSYNQVP 313
                 599********74 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0003      0.59      15      39 ..     183     207 ..     177     209 .. 0.91
   2 ?   -1.0   0.0      0.98   1.9e+03       9      34 ..     215     244 ..     212     254 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0003
   PF13415.1  15 qtrlndvyvldldtntweeigslPp 39 
                  +rln++  ldl +n  +ei+slPp
  MMETSP0890-20130614|5675_1 183 VDRLNELIKLDLGANRLREIPSLPP 207
                 689*********************9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.98
   PF13415.1   9 Glgd....dgqtrlndvyvldldtntweei 34 
                 G ++    +g ++l d+ vld+++n  + +
  MMETSP0890-20130614|5675_1 215 GKNRiesiSGLEALKDLRVLDVQSNRLTSL 244
                 555555556788999999****99976655 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.023        44      27      49 .]     185     207 ..     180     207 .. 0.92
   2 ?    5.4   0.0     0.007        14      26      44 ..     226     244 ..     220     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.023
   PF13418.1  27 plnDlyvfDlstntWtrlpslPs 49 
                 +ln+l  +Dl  n+ +++pslP+
  MMETSP0890-20130614|5675_1 185 RLNELIKLDLGANRLREIPSLPP 207
                 89********************7 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.007
   PF13418.1  26 gplnDlyvfDlstntWtrl 44 
                  +l+Dl v+D+++n+ t l
  MMETSP0890-20130614|5675_1 226 EALKDLRVLDVQSNRLTSL 244
                 579***********97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.81
# Mc/sec: 1100.55
//
Query:       MMETSP0890-20130614|5674_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-10   39.3   1.1    1.1e-09   37.7   0.7    1.9  1  PF05347.10 Complex 1 protein (LYR family)
    1.8e-07   30.7   0.0    4.1e-07   29.6   0.0    1.5  1  PF01245.15 Ribosomal protein L19
    7.4e-07   29.1   0.7    7.4e-07   29.1   0.5    1.8  2  PF13232.1  Complex1_LYR-like
  ------ inclusion threshold ------
      0.011   14.7   0.2      0.011   14.7   0.2    1.7  2  PF08172.7  CASP C terminal


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.7   3.3e-13   1.1e-09       3      55 ..     175     227 ..     173     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 3.3e-13
  PF05347.10   3 vLsLYRalLRaarkfpdynareyirrriReeFrknkn.vtdpekieallkegke 55 
                  L+LYR++L aa++fp+ n r+ i ++iR+eFr+n + +++  +  a++k +++
  MMETSP0890-20130614|5674_1 175 TLNLYRRILFAAKRFPSKN-RQRIYEEIRKEFRQNASlEPNSPEALACIKVAQD 227
                 699****************.*****************66677777888888776 PP

>> PF01245.15  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.2e-10   4.1e-07       6      89 ..      74     156 ..      65     165 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.2e-10
                 HHHCCC--.-S-------EEEEEEECC---BEEEEEE---EEEEE------EEEEE--------EEEEETTTTTEEEEEECE-- CS
  PF01245.15   6 eleeeqlkkdlpefrvGdtvkvevkikegekeriqafeGvviairnkginksftvRkisqgvgvervfplysplikkievvkrg 89 
                 el++++ k ++p+fr+Gd +++e+  +  + e+ q  +G+v+ + n+g+++s+++  +++++   r +p+ys l++++++++r+
  MMETSP0890-20130614|5674_1  74 ELKARSQKYTVPDFRAGDAIEMELLFS-VDSEKRQFAKGLVLGRVNRGVDSSVLLYCVVANTPHIRSIPFYSLLVQNVRIIERN 156
                 4556666789****************9.889999**********************************************9985 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.3   7.8e+03      26      29 ..      40      43 ..      31      72 .. 0.61
   2 !   29.1   0.5   2.2e-10   7.4e-07       3      40 ..     175     211 ..     173     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.3
   PF13232.1 26 frrr 29
                +rr+
  MMETSP0890-20130614|5674_1 40 IRRI 43
                3333 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2.2e-10
   PF13232.1   3 vLsLYRalLrearrfpsyssreyfrrriRdeFrknknv 40 
                  L LYR++L +a+rfps +++  + + iR eFr+n ++
  MMETSP0890-20130614|5674_1 175 TLNLYRRILFAAKRFPSKNRQ-RIYEEIRKEFRQNASL 211
                 699******************.68888********875 PP

>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   3.1e-06     0.011     117     198 ..     168     250 ..     158     255 .. 0.66
   2 ?   -3.7   0.4       1.3   4.4e+03      29      50 ..     265     286 ..     262     292 .. 0.47

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.1e-06
   PF08172.7 117 laklkaDnlkLYEKirYlqsynkk.aspssdsavaastapsalsvearlsidles.dryskaYeeslnPfaaFrkrEseraykr 198
                 + + k  +l+LY +i + ++   + + ++  +++ +++ ++  s+e++++  l+  + ++++Ye +l+Pf +F++ ++e  y+ 
  MMETSP0890-20130614|5674_1 168 IMTSKSSTLNLYRRILFAAKRFPSkNRQRIYEEI-RKEFRQNASLEPNSPEALACiKVAQDSYEHNLKPFINFSEDDKEWVYNT 250
                 6677889999999999987644331333333333.34444555555555444443367899**************999877765 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.3
   PF08172.7  29 latvqaeisasrafnenaslas 50 
                 ++++ +e+s+++++++ ++++s
  MMETSP0890-20130614|5674_1 265 VEEIAEESSIEKSQKQRKQVHS 286
                 4555555444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       873  (0.0638531); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.81
# Mc/sec: 872.75
//
Query:       MMETSP0890-20130614|5669_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-07   28.1   0.0     0.0013   18.1   0.0    3.3  3  PF01465.15 GRIP domain


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.087   1.2e+03       5      12 ..     446     453 ..     445     454 .. 0.88
   2 !    5.6   0.0    0.0008        11      21      39 ..     475     493 ..     471     497 .. 0.83
   3 !   18.1   0.0   9.7e-08    0.0013       4      41 ..     640     678 ..     637     679 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.087
  PF01465.15   5 leYLKNVl 12 
                  eYL++V+
  MMETSP0890-20130614|5669_1 446 TEYLRSVV 453
                 59****97 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0008
  PF01465.15  21 sngreqllpVistlLkFse 39 
                 +  r++l+pV+ +lL ++ 
  MMETSP0890-20130614|5669_1 475 TATRQRLIPVLRSLLGLPH 493
                 6679***********9875 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 9.7e-08
  PF01465.15   4 nleYLKNVllqFLeqke.sngreqllpVistlLkFseee 41 
                 +l YL++ l+ FL   + + +r+qllpV+ ++Lk ++++
  MMETSP0890-20130614|5669_1 640 QLDYLRSTLICFLRGFSqPKLRSQLLPVLVQILKIPPDD 678
                 789*******************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1797  (0.131437); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:01.17
# Mc/sec: 1421.43
//
Query:       MMETSP0890-20130614|5676_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   13.7   0.3       0.13   11.2   0.0    2.3  2  PF09890.4 Uncharacterized protein conserved in archaea (DUF2117)


Domain annotation for each model (and alignments):
>> PF09890.4  Uncharacterized protein conserved in archaea (DUF2117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.7e-06      0.13      87     128 ..     145     185 ..     102     214 .. 0.73
   2 ?   -1.6   0.0     0.082   1.1e+03      35      68 ..     347     380 ..     335     409 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.7e-06
   PF09890.4  87 egktrvlRkisgvspgenilvngiviGkatssevelvsengk 128
                   +++v Rk+s+ + ++ + v+g+viG   +se e v +ngk
  MMETSP0890-20130614|5676_1 145 I-NKKVRRKVSAPDDNDVLWVQGVVIGWLPASESEFVDDNGK 185
                 2.25789******************************99997 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.082
   PF09890.4  35 qierpgesdgeiilwnkkaeeekelaeklsekln 68 
                 q  rp++s   i+  ++++++e+  a +l+e+l+
  MMETSP0890-20130614|5676_1 347 QFKRPDTSVQRILDDEDESDVEDDEASELAEELE 380
                 7789999999999999888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1346  (0.0984494); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.41s 00:00:01.31 Elapsed: 00:00:01.13
# Mc/sec: 1015.30
//
Query:       MMETSP0890-20130614|5680_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-12   46.6   0.0    1.2e-11   44.4   0.0    2.1  2  PF09229.6  Activator of Hsp90 ATPase, N-terminal
    2.3e-07   30.2   2.5    0.00048   19.6   0.4    2.5  2  PF13414.1  TPR repeat
    0.00059   19.2   0.0     0.0018   17.6   0.0    1.9  1  PF00515.23 Tetratricopeptide repeat
     0.0048   16.5   0.0     0.0048   16.5   0.0    3.5  4  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.1   0.0      0.092   12.4   0.0    1.9  1  PF13176.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF09229.6  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.2   3.3e+03      97     125 ..      30      58 ..      12      64 .. 0.62
   2 !   44.4   0.0   4.6e-15   1.2e-11       1     133 [.     283     428 ..     283     432 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.2
                 --SS-SHHHHHHHHTTTT---HHHHHHHT CS
   PF09229.6  97 kvtdkkkeskelkallkkklvpkireklk 125
                 +v + ++e++e ka l ++l+++ ++++k
  MMETSP0890-20130614|5680_1  30 DVLKAEPETEEEKASLVDELKERAKKAFK 58 
                 44456666666777777777777776665 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 4.6e-15
                 -EE-HHHHHHHHHHHHHT.......-EE.E-SSE.........EEEEEEEE.EE-EEEEEE----EEEEEEEEEEEEEEEEETT---.EE----EEEEEEECCC..CTT----EE--SS-SHHHHH..HHHTTTT---HHHHHHHTTHHHHHHH CS
   PF09229.6   1 eKdatkwakeklkellkn.......lkvkedees.........kikitevskveGdasvsqrKGKkiflfelklklewegekkeeee.kkvkGtveipelssen..eeedyeieikvtdkkkeske..lkallkkklvpkireklkkfvkeLke 133
                 e++++ w k++ + ++k+                          ++ite+++v Gdas ++ +GKk  + +l + l+w+ +++ ++    ++Gt + p++s ++  +++ +++ ++v++ ++++++  +++ +k++    +r ++ +++ +L++
  MMETSP0890-20130614|5680_1 283 ERNHITWVKNWVRHKFKSellvelpP-------MplaesfiprLLTITEIKDVRGDASTAVARGKKKYVLDLAVDLSWSFQTDATNPkSIASGTASFPDISADAihDADPLDCIVSVDNTTPQNARavVDSHIKSETQG-LRPAVLELCTKLLT 428
                 78888888888888888854433330.......1334444555899***********************************8888875778************667999999999999999887777777777777654.77777777777665 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.4   1.8e-07   0.00048       4      68 ..      47     109 ..      44     110 .. 0.93
   2 !   14.3   0.2   7.7e-06     0.021      27      68 ..     103     143 ..      98     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.8e-07
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 ++lke++ ++fk +d++   ++y+kAl     +a ly+n++++ l +g +  +A  d+++A + d
  MMETSP0890-20130614|5680_1  47 DELKERAKKAFKTRDMAVCDALYSKALLVKA-DATLYANRSAVRLTMG-RTLDAKYDATEATKND 109
                 689************************9885.9***************.589*********9987 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.7e-06
   PF13414.1  27 ekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 ++A++ d+n+ + +y+l++a +k  + + eA+ +ye   +l 
  MMETSP0890-20130614|5680_1 103 TEATKNDKNYSKGWYRLGQACEKA-QLFSEAVSAYETGKALE 143
                 899********************6.6*********9655544 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.7e-07    0.0018       2      33 ..     114     145 ..     113     146 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 k +y+lG+a+ k + + eA+ +ye    l+P+
  MMETSP0890-20130614|5680_1 114 KGWYRLGQACEKAQLFSEAVSAYETGKALEPS 145
                 78**********************99999996 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.3   3.7e+03       6      28 ..      51      73 ..      47      74 .. 0.58
   2 ?    0.7   0.0      0.21   5.8e+02       2      33 ..      80     111 ..      79     112 .. 0.87
   3 !   16.5   0.0   1.8e-06    0.0048       2      33 ..     114     145 ..     113     146 .. 0.93
   4 ?   -1.0   0.2      0.73     2e+03      13      26 ..     152     165 ..     151     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.3
                HHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  6 nlGlayyklgdyeeAleafekAl 28
                ++++ ++k +d + + +++ kAl
  MMETSP0890-20130614|5680_1 51 ERAKKAFKTRDMAVCDALYSKAL 73
                45555556666555556666665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  ++ n+  + + +g+  +A+ +  +A + d n
  MMETSP0890-20130614|5680_1  80 TLYANRSAVRLTMGRTLDAKYDATEATKNDKN 111
                 5788999999999*************999887 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++y+lG+a++k++ + eA+ a+e   +l+P 
  MMETSP0890-20130614|5680_1 114 KGWYRLGQACEKAQLFSEAVSAYETGKALEPS 145
                 68**********************99999985 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.73
                 HTT-HHHHHHHHHH CS
  PF07719.12  13 klgdyeeAleafek 26 
                 +l + ++A+ +fe+
  MMETSP0890-20130614|5680_1 152 ALERTKKARIDFEE 165
                 578899******98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.4e-05     0.092       2      30 ..     116     142 ..     116     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.4e-05
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                 +++L++++++ + +++A+++ye   + + 
  MMETSP0890-20130614|5680_1 116 WYRLGQACEKAQLFSEAVSAYET--GKAL 142
                 689*******************8..5444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       822  (0.0601229); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.98
# Mc/sec: 1061.24
//
Query:       MMETSP0890-20130614|5688_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-17   61.8   0.0    5.9e-17   61.3   0.0    1.2  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
     0.0052   16.0   0.0      0.012   14.8   0.0    1.5  1  PF00078.22 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   8.7e-21   5.9e-17     113     242 ..       4     142 ..       1     147 [. 0.85

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 8.7e-21
   PF07727.9 113 kvckLkkslYgLkqapraWyeklsevll.klgfkkseadkclfvkkkeeel..iivllYVDDlliagsskelieelkeeLkkefemkd....lgelkyfLgleier..keegillsqekyvkkllkkfkmedakpvstp 242
                 ++++L+ slYgL  +p    ++l++ l+ klgf++s++d++l++k +++++  ii++++VDD+l++++++++  el ++L++e+   +    + +++ fLg+e +   k +++++s  + v++ll+++++e  k++  p
  MMETSP0890-20130614|5688_1   4 YAMRLRTSLYGLSNSPALFSRTLNKWLTtKLGFSRSRSDSTLYMKFNKSTKkwIIICVFVDDVLVVSNDDDETYELRTKLREEYGEGQgnlwTDSISSFLGIECHLnsKCTKLTMSMGAKVRQLLEDVQLEPHKKKLNP 142
                 789***********************96368************9977665556*******************************7654222257899******98743667889999999*********9998887666 PP

>> PF00078.22  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-06     0.012     129     184 ..      14      85 ..       9      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-06
  PF00078.22 129 GsvlSPllfnlflhellkflrkaf.................kprllyvrYaDDiligakskeeleeileevee 184
                 G+ +SP+lf ++l++ l      f                 k+ + +++++DD+l+++++ +e+ e+ ++++e
  MMETSP0890-20130614|5688_1  14 GLSNSPALFSRTLNKWLTTKLG-FsrsrsdstlymkfnkstKKWIIICVFVDDVLVVSNDDDETYELRTKLRE 85 
                 899**********999887776.459999***********999*****************9999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:01.00
# Mc/sec: 1262.88
//
Query:       MMETSP0890-20130614|5686_1  [L=1151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.54u 0.47s 00:00:02.00 Elapsed: 00:00:01.31
# Mc/sec: 2105.50
//
Query:       MMETSP0890-20130614|5692_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-21   74.7   0.0    1.1e-20   73.9   0.0    1.3  1  PF04427.13 Brix domain


Domain annotation for each model (and alignments):
>> PF04427.13  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   8.2e-25   1.1e-20       2     190 ..      45     244 ..      44     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 8.2e-25
  PF04427.13   2 itsrkpskrlrqllkdlrslmppnakklkrgkknklk.....dllelagekgvthllvvgeskk.rpsslrigrlpngptl...efrvenykllkdikkakkrpk.gskpllvfngftteldpegkllkellqdlFpppnvekislksidrvilfsnqrdt...........visfRhy.ifksgskvvkkllravkLeeiGPrftlrlik 190
                 ++s+k+s+r++q l+ +r l+ p ak l+r++   ++     + +e ++++++  l+ v +++k rp +l++gr+++g++l   ef+v+ +  +    ++    + gskp+l+f g   ++ +  ++lk+ ++d+F++++v++i+l ++d v +f +++ +            +s+R+  + ksg++ + +     kL   G  + l+l++
  MMETSP0890-20130614|5692_1  45 LRSTKTSERVNQALRVVRCLKTPDAKLLNRRRE-DVRvfddaSGVERICQREDAALFGVISHSKkRPDNLILGRIFDGQILdmfEFGVDFVDMQAKGINK----MlGSKPCLCFVGDW-NTCELARKLKNFFIDFFRGEEVDTINLAGLDAVYVFAANKVEetigliqiipfRLSLRRAnKLKSGNNIPIT-----KLMPAGAPLVLKLRR 244
                 79******************************7.888899999**************99888888**********************9877555444333....34999*******65.56799********************************96433678999977777777777445556655555.....999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.68
# Mc/sec: 1120.65
//
Query:       MMETSP0890-20130614|5694_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-10   39.5   9.1    6.1e-10   39.2   6.3    1.1  1  PF01086.12 Clathrin light chain
  ------ inclusion threshold ------
      0.026   14.0   0.1      0.026   13.9   0.1    1.1  1  PF05235.9  CHAD domain
        7.3    6.6  19.7        4.6    7.2   2.5    2.3  2  PF06886.6  Targeting protein for Xklp2 (TPX2)


Domain annotation for each model (and alignments):
>> PF01086.12  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   6.3   1.3e-13   6.1e-10     119     223 ..       6     103 ..       1     105 [. 0.93

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.3e-13
  PF01086.12 119 eerdkeieerdeasekkkeeliekAkkeiddfYenynekkektkaqtrkeeeeflaerddtskdgTeWervakLvdfsdkgskqgkdksRfrelLlsLKkdeqaP 223
                  e +++i+e+ +++e+   e +  A++++d fY++  +kk +++aq+r+ ee + +e ++  ++    erv++L+d + +++    + + + +lL++LK   q P
  MMETSP0890-20130614|5694_1   6 REFEEKIQEKQRKEEECLSERKAAAERDLDVFYDQLTDKKAQRQAQNREHEEILKNEIENANNQENPFERVMNLIDSQAVST----EMQIMHSLLIRLK---QQP 103
                 57899*********************************************9999999999999************9988888....8899*********...766 PP

>> PF05235.9  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   5.8e-06     0.026      64     133 ..      26     103 ..       6     163 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.8e-06
   PF05235.9  64 raLGraRDldVllerllpaleqe.....ealkallerlearrrra..herllaaldserytallqaleell.aappll 133
                 r  ++ RDldV+ ++l ++++q      e  + l  ++e +  ++  +er+   +ds+++   +q ++ ll + ++++
  MMETSP0890-20130614|5694_1  26 RKAAAERDLDVFYDQLTDKKAQRqaqnrEHEEILKNEIENANNQEnpFERVMNLIDSQAVSTEMQIMHSLLiRLKQQP 103
                 567899***********4444444455546666777777777665669999999999999999999998774433333 PP

>> PF06886.6  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.7    0.0043        19      11      36 ..       6      31 ..       2      35 .. 0.72
   2 ?    7.2   2.5     0.001       4.6      13      42 ..      37      66 ..      35      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0043
   PF06886.6 11 keFdkkleEkekaeeaekeevearqk 36
                +eF++k++Ek+ +ee+  +e++a+++
  MMETSP0890-20130614|5694_1  6 REFEEKIQEKQRKEEECLSERKAAAE 31
                57888888888888877777777655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.001
   PF06886.6 13 FdkkleEkekaeeaekeevearqkeeeeea 42
                F+ +l  k+++++a+++e e+  k e e a
  MMETSP0890-20130614|5694_1 37 FYDQLTDKKAQRQAQNREHEEILKNEIENA 66
                9********************999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1350  (0.098742); expected 273.4 (0.02)
Passed bias filter:                      588  (0.0430076); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.45s 00:00:00.97 Elapsed: 00:00:00.63
# Mc/sec: 654.24
//
Query:       MMETSP0890-20130614|5707_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-12   45.9   0.2    7.4e-12   44.9   0.1    1.6  1  PF10507.4  Protein of unknown function (DUF2453)
    3.2e-10   39.5   0.0    5.1e-09   35.7   0.0    2.4  1  PF00027.24 Cyclic nucleotide-binding domain
    0.00013   21.5   0.0    0.00037   20.1   0.0    1.7  2  PF05099.8  Tellurite resistance protein TerB
  ------ inclusion threshold ------
      0.013   14.7   0.2      0.021   14.0   0.1    1.2  1  PF04391.7  Protein of unknown function (DUF533)


Domain annotation for each model (and alignments):
>> PF10507.4  Protein of unknown function (DUF2453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   2.2e-15   7.4e-12      48     110 ..       2      66 ..       1      67 [. 0.92

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 2.2e-15
   PF10507.4  48 sdvlGiqlaglieklvqrlg..lkepkltkkqlkskatrlatkvgsvlGilvGllLGmlpLlfld 110
                 sdv+Gi+++ +ie++ + +    ++ +lt +q++ ++ r  ++ +svlGi +G+lLGm+pLlf+ 
  MMETSP0890-20130614|5707_1   2 SDVVGIGVGDIIERYSSAILgkRAHAALTIEQMELNICRAVKSWASVLGISIGCLLGMIPLLFIG 66 
                 9*************9987653567899************************************96 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.5e-12   5.1e-09       2      89 ..     105     220 ..     104     222 .. 0.95

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.5e-12
                 EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EE........................EEEEE-TTEECSGGGCCSSS....B-SSEEEEEEEEEEEEEEHHHHHHHHCC- CS
  PF00027.24   2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkes........................ilaelgpGdffGelalltge....prsatvvaltdvevlvipredfrellekn 89 
                 rs+++g +++k G++ d++ ++ sG v  y++++dg  +                              +G ++G  all+++    p++ tv+a + +++++++++++re +++n
  MMETSP0890-20130614|5707_1 105 RSYEAGATLLKAGQTLDRVLLVASGAVDSYETTPDGGLKrlyryrakrdiasmnsvmppkdkiDAPPNIRGCVIGGTALLDETvrrqPYPSTVIASESTRIVEWKYKSLREEMDSN 220
                 89***********************************99********************9998777777899999999999999999**************************998 PP

>> PF05099.8  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         2   6.8e+03      41      76 ..      74     108 ..      73     112 .. 0.76
   2 !   20.1   0.0   1.1e-07   0.00037      95     138 ..     272     315 ..     256     339 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2
   PF05099.8  41 teeEiqairellrsrygldpeeakalielfeeaeee 76 
                 t+eE+   ++ l + yg++p+   +l+++++  + e
  MMETSP0890-20130614|5707_1  74 TPEEMMLYESAL-RPYGVSPQHFFDLMRAAQWRSYE 108
                 677888888888.88899999888888888876655 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.1e-07
   PF05099.8  95 erlallealwevAlADGeldeeEdavlrrvaelLglshadfira 138
                 +rl++ +a+ +vAl+DG+++++E+++l   a+   +++++ ++a
  MMETSP0890-20130614|5707_1 272 DRLQVYQAIVQVALSDGVVHAAEREFLAGFAQQYDITQEEHEQA 315
                 68888888888888888888888888887777766666666554 PP

>> PF04391.7  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.2e-06     0.021      61     120 ..     248     313 ..     214     318 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.2e-06
   PF04391.7  61 aagepeelaqsep......aeeearaellLrAmiaAAkADGhideeErarIeeeleelgadaeeqa 120
                 ++++ ++l+++++      ++   +   + +A+++ A +DG + ++Er+ + +  ++ ++++ee++
  MMETSP0890-20130614|5707_1 248 KTRAGAPLSPHSTlpgddhTTMVVDRLQVYQAIVQVALSDGVVHAAEREFLAGFAQQYDITQEEHE 313
                 333333333333333443355556667788**********************99999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.43s 00:00:01.10 Elapsed: 00:00:00.66
# Mc/sec: 1390.61
//
Query:       MMETSP0890-20130614|5709_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-55  186.4   0.5    1.7e-52  177.6   0.4    2.4  1  PF00448.17 SRP54-type protein, GTPase domain
    5.2e-07   29.5   0.1      1e-06   28.6   0.0    1.5  1  PF02881.14 SRP54-type protein, helical bundle domain
    5.9e-07   28.6   0.2    1.7e-06   27.1   0.1    1.7  2  PF06414.7  Zeta toxin
    3.1e-06   27.2   0.1    8.4e-06   25.8   0.0    1.7  2  PF13401.1  AAA domain
    4.8e-06   25.4   0.1    1.2e-05   24.1   0.0    1.7  1  PF03308.11 ArgK protein
    6.5e-06   25.7   0.0    1.5e-05   24.5   0.0    1.6  1  PF13604.1  AAA domain
    3.6e-05   23.3   0.5    0.00057   19.4   0.1    2.3  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    3.9e-05   23.9   0.1    0.00013   22.3   0.1    1.9  2  PF13191.1  AAA ATPase domain
    5.8e-05   22.4   0.9    0.00019   20.8   0.6    1.8  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    0.00051   19.6   2.1       0.07   12.7   0.2    3.0  2  PF03266.10 NTPase
    0.00073   19.6   0.0     0.0021   18.1   0.0    1.9  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0018   18.1   0.1     0.0055   16.5   0.1    1.8  1  PF01926.18 50S ribosome-binding GTPase
     0.0037   17.0   0.0     0.0095   15.7   0.0    1.7  1  PF13671.1  AAA domain
     0.0065   15.4   0.0       0.01   14.7   0.0    1.3  1  PF01591.13 6-phosphofructo-2-kinase
     0.0094   15.3   0.3       0.63    9.5   0.0    2.4  2  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.016   14.9   0.0       0.05   13.3   0.0    2.0  1  PF13173.1  AAA domain
      0.038   13.1   0.1      0.099   11.7   0.0    1.8  2  PF12846.2  AAA-like domain
      0.039   14.6   0.2      0.039   14.6   0.1    2.1  2  PF13207.1  AAA domain
      0.048   12.7   0.1       0.18   10.8   0.1    1.9  1  PF03193.11 Protein of unknown function, DUF258
      0.049   13.1   0.0       0.11   11.9   0.0    1.6  1  PF01583.15 Adenylylsulphate kinase
      0.058   13.2   0.2       0.17   11.6   0.0    1.9  1  PF13521.1  AAA domain
      0.061   12.3   0.5       0.15   11.0   0.1    1.8  2  PF00142.13 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
      0.066   12.5   0.1       0.54    9.5   0.1    2.3  1  PF05272.6  Virulence-associated protein E
      0.082   11.7   0.0       0.13   11.1   0.0    1.3  1  PF09848.4  Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   0.4     3e-55   1.7e-52       2     195 ..     147     359 ..     146     360 .. 0.91

  Alignments for each domain:
  == domain 1    score: 177.6 bits;  conditional E-value: 3e-55
                 EEEEEE-------TTTHHHHHHHHHHT---EEEEE--TSSHHHHHHHHHHHHHTT-EEEE-SS--EHHHHHHHHHHHHHHTT-SEEEEE----GTTCHHHHHHHHHHHHHSSSSEEEEEEETTS-HCHHHHHHHHH..................HHS---EEEEESTTT.-S----HHHHHHHTT--EEEEE----CCGCEE--HHHHHHHHC CS
  PF00448.17   2 nvillvGlqGaGKTTtlaKLAallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikekeekdpaavakeavekakeekidvvlvDTaGrlqndkelmeelkkikkvlkpdevllvldatigqealkqakaFk..................eaveltgviltklDg.dakgGaalsiaaelklPikfigvGekiedleefdperlvsrll 195
                  +i++vG++G+GK Ttl+K+A +lk++g  v ++a+DtfR +AveQL+ +a+ l+v+++++ + kdpa+va++a+++a + k+dvvlvDTaGr+qn+++lm++l+k+  + +pd vl+v +a++g++ + q + F+                  +av+++g++ltk+D  d k Ga+ls+++++++P+ figvG+k++ l++ + +++v +l+
  MMETSP0890-20130614|5709_1 147 YIIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACDTFRSGAVEQLRRHADCLHVDLFERGYLKDPADVARAAIDHATKAKHDVVLVDTAGRMQNNDKLMRQLAKLIAINNPDLVLFVGEALVGNDGIDQLNMFNsslkhfaneqfttsgserRAVGIDGLVLTKFDCiDDKVGAVLSMTYKTGQPVCFIGVGQKYTHLKKLSVNSVVTSLF 359
                 689********************************************************************************************************************************999973332222322222222223689**********7589************************************99986 PP

>> PF02881.14  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.8e-09     1e-06      10      74 ..      49     116 ..      40     117 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.8e-09
                 -----..---------HHHHHHHHHHT----HHHHHHHHHHHHHHHH....H-----TTT----HHHH CS
  PF02881.14  10 nkltgklfltekkidelleeleeaLleaDVgvevvkkliervreklvg...kkgvspkeeikkilkde 74 
                    t ++ lte+++  +++el++ L++++V+ e++++++++v  +l g   ++ v p+ +ik++l d+
  MMETSP0890-20130614|5709_1  49 TAWTTGSRLTESDVTPVMDELKDRLVSKNVASEIATEITQSVSTQLCGkqiERFVRPSTMIKQALIDA 116
                 4556668999******************************************************9885 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   1.2e+03     154     173 ..      72      91 ..      49     105 .. 0.54
   2 !   27.1   0.1     3e-09   1.7e-06       5     118 ..     134     252 ..     130     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2
   PF06414.7 154 Rrvpkevhdeayeglpesve 173
                 R+v+k+v +e ++++ +sv+
  MMETSP0890-20130614|5709_1  72 RLVSKNVASEIATEITQSVS 91 
                 44444444444444444443 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 3e-09
   PF06414.7   5 lsnkk.vpeqekpkavllgGqpGAGKtslaellleela.agnivrida.Delrkyhpayrelekkdpkeaseltqkd....aselveklidralekgyniilegtlrspdkarkiarklkk 118
                 l++k+ ++++++p +++ +G  G GK+++++++   l+ +g +v i a D++r+    +++l+++ +   ++l+++        +++++id+a++++ +++l  t    ++ +k++r+l+k
  MMETSP0890-20130614|5709_1 134 LRRKAqTQSSKRPYIIVFVGINGVGKSTTLSKVAYYLKaHGATVSIAAcDTFRSGA--VEQLRRHADCLHVDLFERGylkdPADVARAAIDHATKAKHDVVLVDTAGRMQNNDKLMRQLAK 252
                 5667767888************************************877****975..66777766666666665443333999****************988888888888899999987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.1   3.5e+03      55      97 ..      79     118 ..      55     136 .. 0.56
   2 !   25.8   0.0   1.5e-08   8.4e-06       3     112 ..     145     255 ..     139     278 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 6.1
   PF13401.1  55 lqkllsalglpakgrltteellealqealrrrrt.rlliiDEaq 97 
                 +++++ ++ ++ +     + + +++++ +r   + +  +iD ++
  MMETSP0890-20130614|5709_1  79 ASEIATEITQSVST----QLCGKQIERFVRPSTMiKQALIDAVE 118
                 34444444433322....44445555444444434334444444 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.5e-08
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkel.lqkllsalglpakg......rltteellealqealrrrrtrlliiDEaqrL..seealeelrslld 112
                 + +i+v++G  GvGK+t+l ++a  l        ka+ ++v ++a  + ++   ++l +  +  + +       ++ +++ +a  +++++++++++++D a r+  +++++ +l  l  
  MMETSP0890-20130614|5709_1 145 RPYIIVFVGINGVGKSTTLSKVAYYL--------KAHGATVSIAACDTFRSGaVEQLRRHADCLHVDlfergyLKDPADVARAAIDHATKAKHDVVLVDTAGRMqnNDKLMRQLAKLIA 255
                 679*********************99........778887777777754444355555555554444777999999999999999999999999**********654666666644433 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.1e-08   1.2e-05      24     148 ..     141     255 ..     117     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.1e-08
                 GG----EEE--B-------HHHHHH---HHHH----EEEEEE-------------------TTTT-TTEEEEEE---------HHHHHHHHHHHHH----EEEEE------HHHHHHTT-SS-EE CS
  PF03308.11  24 pkaGralvvGltGvPGaGkstlveklikelrrrGkrvavlavDPsspftGGsilGDrlRlerlavdegvfiRslasrGalGGlakktreviklldaaGfDvilvetvGvGqsevdiievadtvvl 148
                 +++ r +++ + G+ G+Gkst+++k++  l+++G  v++ a D   +f  G++  ++lR +    +       l  rG l   a  +r++i     a +Dv+lv+t G  q + ++++    +++
  MMETSP0890-20130614|5709_1 141 QSSKRPYIIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACD---TFRSGAV--EQLRRHADCLHV-----DLFERGYLKDPADVARAAIDHATKAKHDVVLVDTAGRMQNNDKLMRQLAKLIA 255
                 4456789999*******************************99...6888887..444444444444.....44567888888999999999999999999999999988887777766655555 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.6e-08   1.5e-05      18     122 ..     146     259 ..     134     269 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.6e-08
   PF13604.1  18 drvavvqGpAGtGKttvlkalrealeaagkrvvglAptg...kaakvLeeelgiearTiasllerldkeeaegrke........ldaktllvvDEAgmvdtrq..larlleaaekaga 122
                   + v +G  G GK+t+l+ ++ +l+a g +v ++A       a+++L+++    a+ ++  l++ +  ++ ++ +          ++++++vD Ag +++++  +++l ++++ ++ 
  MMETSP0890-20130614|5709_1 146 PYIIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACDTfrsGAVEQLRRH----ADCLHVDLFERGYLKDPADVAraaidhatKAKHDVVLVDTAGRMQNNDklMRQLAKLIAINNP 259
                 3456778****************************9865111455555555....6666655555554444433335677766555666********998754448899888876554 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     1e-06   0.00057       2      34 ..     148     179 ..     147     188 .. 0.90
   2 ?    1.6   0.0      0.32   1.8e+02      58     108 ..     229     274 ..     212     305 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1e-06
                 EEEEE-------HHHHHHHHHHHHH-------E CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyrvavv 34 
                 i+++vG  ++GK+t++ k++ +lk+ g +v  +
  MMETSP0890-20130614|5709_1 148 IIVFVGINGVGKSTTLSKVAYYLKAHGATVS-I 179
                 899************************9998.4 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.32
                 --EEEEE-SSEEEEEEE-SSS----HHHHHHCS--S-EEEE---S.--SEE CS
   PF03205.9  58 adlvlvsieeplavvtgfllekeadLeallsvlsvDlvlveGfkspkenpk 108
                  d+vlv +  +++  +++      +L++l+   + Dlvl+ G      n+ 
  MMETSP0890-20130614|5709_1 229 HDVVLVDTAGRMQNNDKL----MRQLAKLIAINNPDLVLFVGEAL-VGNDG 274
                 455566555544444444....33333444444499****99887.55554 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.1   2.3e+03      75     108 ..      87     117 ..      35     138 .. 0.50
   2 !   22.3   0.1   2.2e-07   0.00013      12      82 ..     130     200 ..     125     283 .. 0.62

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 4.1
   PF13191.1  75 lrellrqlltelaaelggwreallaalgalipel 108
                  +++  ql++++ +++ ++ + +++al +   ++
  MMETSP0890-20130614|5709_1  87 TQSVSTQLCGKQIERFVRPSTMIKQALID---AV 117
                 34444444444444444444444444443...33 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.2e-07
   PF13191.1  12 Llaalrrvsegsp.....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrql 82 
                 L+a+lrr +++++     +++++G  G+GKS+ l ++a  + ++++ +  + +d +         +++lr  +++l
  MMETSP0890-20130614|5709_1 130 LAAVLRRKAQTQSskrpyIIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACDTFRSGA-----VEQLRRHADCL 200
                 5666666444444456799***********************************999882.....22333333332 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.6   3.3e-07   0.00019       9     127 ..     156     269 ..     148     337 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.3e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxx RF
  PF01656.18   9 GvGKTtlaanLaralakrglrVlliDlDpqannssllgkvseilkkgeekasal.....lenfeagllaegeeglvesllkkalealikeayDvviiDtapglgel........vanalqaadllvvviepe 127
                 GvGK+t+    a++l+ +g  V    +     +++  g+v e+l+   +             fe+g+l++        ++++a+++  k++ Dvv++Dta+ +  +           a++++dl++ v e+ 
  MMETSP0890-20130614|5709_1 156 GVGKSTTLSKVAYYLKAHGATVSIAAC-----DTFRSGAV-EQLR---R----HadclhVDLFERGYLKD-----PADVARAAIDHATKAKHDVVLVDTAGRMQNNdklmrqlaKLIAINNPDLVLFVGEAL 269
                 9*********************98888.....45555545.2222...2....12344634477777777.....56689******99999************99999988866556788888888877765 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.3   1.3e+03     112     136 ..     111     137 ..     108     145 .. 0.70
   2 !   12.7   0.2   0.00012      0.07       5      41 ..     152     188 ..     148     280 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHT..TTSEEEEE--SS- CS
  PF03266.10 112 kkfkeaveevls..sekpvlatvhrrk 136
                 + +++ave+vl+   ++ vla v rrk
  MMETSP0890-20130614|5709_1 111 QALIDAVERVLTpkISTDVLAAVLRRK 137
                 678999999999433455888777775 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00012
                 E-------HHHHHHHHHH-...---EE--EEE----- CS
  PF03266.10   5 TGepgvGKtTlvkkvlellksegvkvgGfyteevreg 41 
                  G  gvGK+T ++kv+  lk++g +v+   +   r+g
  MMETSP0890-20130614|5709_1 152 VGINGVGKSTTLSKVAYYLKAHGATVSIAACDTFRSG 188
                 5889*******************99987777777765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.7e-06    0.0021       1      91 [.     149     252 ..     149     284 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.7e-06
                 EEEE-------HHHHHHHHHHCTHE..EEEEECCSSSSS.....................T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHH CS
  PF00004.24   1 vllyGppGtGKTllakavakelgve..fleisgsellsk.....................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 ++++G  G+GK+++ + va  l+++   ++i + + + +                     y+++ ++  r+ +++a + + + ++++D + ++ +++         +++ qL +
  MMETSP0890-20130614|5709_1 149 IVFVGINGVGKSTTLSKVAYYLKAHgaTVSIAACDTFRSgaveqlrrhadclhvdlfergYLKDPADVARAAIDHATKAK-HDVVLVDTAGRMQNND---------KLMRQLAK 252
                 5799*****************985533566666666645689999999***********9***************98887.9******999996666.........45555544 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.6e-06    0.0055       2      86 ..     149     267 ..     148     294 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 9.6e-06
                 EEEE--TT---HHHHHHHH...CSTCTEETS-TT-SSSESEEE.........E...............................ETTE....EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLt...gekaakvsdypgtTrditene.........v...............................kkek....iilvDtPGiiegasedkeiegikkylekveradvlllvvd 86 
                 +++vG   vGKSt + +     +         +g T +i  +          +                               +  k    ++lvDt+G ++  ++dk + +++  l ++++ d++l+v +
  MMETSP0890-20130614|5709_1 149 IVFVGINGVGKSTTLSKVAyylK--------AHGATVSIAACDtfrsgaveqLrrhadclhvdlfergylkdpadvaraaidhaT--KakhdVVLVDTAGRMQ--NNDKLMRQLA-KLIAINNPDLVLFVGE 267
                 799************99973332........333333332211122222222133333444444455555555555555555442..1335579******763..3444333333.3667788899999866 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-05    0.0095       1      93 [.     148     252 ..     148     265 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.7e-05
   PF13671.1   1 lvllvGlpGsGKstlaerl...lkklg..yvrlsqdtlrkrlfgtdqqskt.........dytrvlkrlyqilnklarkalsagrsviv.datnlsreerarfvklak 93 
                 ++++vG  G GKst + ++   lk++g    +   dt+r+   ++ + +                lk+  ++ ++ +  a +a+++v++ d   +++++ + +++lak
  MMETSP0890-20130614|5709_1 148 IIVFVGINGVGKSTTLSKVayyLKAHGatVSIAACDTFRSGAVEQLRRHADclhvdlferG---YLKDPADVARAAIDHATKAKHDVVLvDTAGRMQNNDKLMRQLAK 252
                 589************9998555677776555577788888776655544445555443221...44445567788899999999996652666777777777777776 PP

>> PF01591.13  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.8e-05      0.01       6      59 ..     139     192 ..     135     249 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.8e-05
  PF01591.13   6 vknlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreavka 59 
                  ++ ++++ +iv+vG+   gK+++ +k+  ylk  g +  +     +r  av++
  MMETSP0890-20130614|5709_1 139 QTQSSKRPYIIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACDTFRSGAVEQ 192
                 5677899**************************766655444444444444443 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.081        46      37      50 ..     111     124 ..     110     132 .. 0.84
   2 !    9.5   0.0    0.0011      0.63      26      40 ..     149     163 ..     136     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.081
   PF13555.1  37 STllDAiqtlLvpa 50 
                   l+DA+  +L+p+
  MMETSP0890-20130614|5709_1 111 QALIDAVERVLTPK 124
                 579**********7 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0011
   PF13555.1  26 tlltGasGsGKSTll 40 
                  +++G +G+GKST l
  MMETSP0890-20130614|5709_1 149 IVFVGINGVGKSTTL 163
                 6899*********98 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.8e-05      0.05       4      42 ..     148     187 ..     145     303 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.8e-05
   PF13173.1   4 ilvitGpRrvGKttllkqlakell.keesilyinlddeel 42 
                 i+v  G+ +vGK+t+l ++a+ l+ +   +   ++d+ + 
  MMETSP0890-20130614|5709_1 148 IIVFVGINGVGKSTTLSKVAYYLKaHGATVSIAACDTFRS 187
                 8999***************987775333333334555444 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.8   1.1e+03     127     127 ..      78      78 ..      14     141 .. 0.52
   2 ?   11.7   0.0   0.00017     0.099       3      55 ..     148     204 ..     146     281 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.8
   PF12846.2 127 g 127
                  
  MMETSP0890-20130614|5709_1  78 V 78 
                 1 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00017
   PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvvii..Dp..ggeysglaralggqvidl 55 
                  ++++G  G GKS++l k+++ l a+g+ v i   D+   g  ++l r  +  ++dl
  MMETSP0890-20130614|5709_1 148 IIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAacDTfrSGAVEQLRRHADCLHVDL 204
                 6799*************************9999666643333333333334455555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       5.4   3.1e+03      61      61 ..      39      39 ..       7     138 .. 0.64
   2 ?   14.6   0.1   6.8e-05     0.039       1      46 [.     148     216 ..     148     263 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 5.4
                H CS
   PF13207.1 61 l 61
                +
  MMETSP0890-20130614|5709_1 39 V 39
                1 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 6.8e-05
                 EE--B--TT---HHHHHHHHHHS.........................TEEEEEGGGB--GGGS-B----- CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl.........................glpvlslddllreeglkelddge 46 
                 +i+++G+ G+GKsT   ++a +l                           ++l+ d    e+g+ + ++++
  MMETSP0890-20130614|5709_1 148 IIVFVGINGVGKSTTLSKVAYYLkahgatvsiaacdtfrsgaveqlrrHADCLHVDL--FERGYLKDPADV 216
                 7999***************99985554333333222222222221122133444444..444444444443 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00031      0.18      34      61 ..     145     172 ..     120     183 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00031
                 TTSBEEEE-------HHHHHHH------ CS
  PF03193.11  34 kdktsvlvGqSGvGKSsLinallpeldl 61 
                 +  ++v+vG  GvGKS+ + +++  l++
  MMETSP0890-20130614|5709_1 145 RPYIIVFVGINGVGKSTTLSKVAYYLKA 172
                 45799************99888766555 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.11       2      49 ..     146     193 ..     145     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0002
                 --EEEEE-ETT---HHHHHHHHHHHHCTS--EEEE---TTT----TT- CS
  PF01583.15   2 gvvvwltGlsgsGKstiavalekkLvekgikvylLdGdnvRhgLnkdL 49 
                 + ++ + G+ g GKst   +++ +L+++g +v +   d+ R g  ++L
  MMETSP0890-20130614|5709_1 146 PYIIVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACDTFRSGAVEQL 193
                 7899*************************************9987776 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.17       2      81 ..     149     237 ..     148     243 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0003
   PF13521.1   2 ivitGgpstGKTtlleaLa....argypvvpEvarevleeklakgeealpweedllafaeavleaqleqeaaa......aaskllfcDrg 81 
                 iv++G  ++GK+t+l+++a    a+g  v   +  ++ + ++++ +++++       f+++ l+  +  ++aa      a+++++++D+ 
  MMETSP0890-20130614|5709_1 149 IVFVGINGVGKSTTLSKVAyylkAHGATVSIAACDTFRSGAVEQLRRHADCL-HVDLFERGYLKDPADVARAAidhatkAKHDVVLVDTA 237
                 89***************99777777776654444444444444444444432.4457888888888777777777777778999999986 PP

>> PF00142.13  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   1.6e+03     210     264 ..      64     115 ..      49     121 .. 0.62
   2 ?   11.0   0.1   0.00027      0.15       3      37 ..     149     183 ..     147     191 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.8
  PF00142.13 210 PrdnivrkaelrkktvieyaeeseqakeyrelakkileneklviPkplsedeLee 264
                 P  ++++   + k++  e+a+e +q+   +   k+i   e++v+P  + +++L +
  MMETSP0890-20130614|5709_1  64 PVMDELKDRLVSKNVASEIATEITQSVSTQLCGKQI---ERFVRPSTMIKQALID 115
                 555566666666666666666666554444333333...3467777777777765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00027
  PF00142.13   3 iaiYGkGGiGksttsqnlaaalaemgkkvlivGCD 37 
                 i + G  G+Gkstt + +a+ l + g +v i  CD
  MMETSP0890-20130614|5709_1 149 IVFVGINGVGKSTTLSKVAYYLKAHGATVSIAACD 183
                 6788999***************************9 PP

>> PF05272.6  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00095      0.54      24      73 ..     117     167 ..      81     176 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00095
   PF05272.6  24 edseytrevsklfliaavarvleP.gckfDevliLqGeqgigKstflkkLg 73 
                  +  +t ++s+ +l a+  r  +    k  ++++++G  g+gKst+l+k++
  MMETSP0890-20130614|5709_1 117 VERVLTPKISTDVLAAVLRRKAQTqSSKRPYIIVFVGINGVGKSTTLSKVA 167
                 456677788888888888887766488999****************99875 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.13       3     127 ..     148     267 ..     146     293 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00023
   PF09848.4   3 vilvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakkl...ekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrlltkkdqkekksgenqlkellkrak.vvvalvDe 127
                 +i+  G  G GK+  ++++++ l  ++++ t  +      ++    e+l++++   + + +++   k  + + ++ +++++k k+dvv+vD A r+ ++       +   ql +l+  ++  +v++v+e
  MMETSP0890-20130614|5709_1 148 IIVFVGINGVGKSTTLSKVAYYL--KAHGATVSI-AACDTFRSGAVEQLRRHAdclHVDLFERGYLKDPADVARAAIDHATKAKHDVVLVDTAGRMQNND------KLMRQLAKLIAINNpDLVLFVGE 267
                 5566699999***********99..555555444.4455667777777877776776666666666555555555578999***************9933......23456777776633367777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.63
# Mc/sec: 1373.15
//
Query:       MMETSP0890-20130614|5710_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00029   19.8   0.1      0.026   13.4   0.1    2.3  2  PF02126.13 Phosphotriesterase family


Domain annotation for each model (and alignments):
>> PF02126.13  Phosphotriesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.9e-06     0.026      36     110 ..      23      98 ..       2     136 .. 0.71
   2 !    4.0   0.0    0.0014        19     229     280 ..     220     275 ..     206     295 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-06
                 HHHHHH---HHHHH----EEE.E---TT----HHHHHHHHHHH.T-EEE--B---S..---HHHHT--HHHHHHHHH CS
  PF02126.13  36 evaaiveelrelkarGvrtiv.elttiglgRdvsllaevarat.evnivaatGlyvdadvpaavrlrsveeltdvlv 110
                  ++ +v+el  l  r ++ +v ++tt   gRd++ll++va++  + ni  + G  +  ++  + ++++v+ l + l+
  MMETSP0890-20130614|5710_1  23 SYEDAVRELSALEGREGNILVaDVTTKAEGRDIRLLQRVAEQVrKRNIFLTYGASILQNTNDNEEAMAVQ-LKQQLI 98 
                 7899**********988876659*****************997234666666655544555555555553.444444 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0014
                 ----HHHHHHHHH.HHHH---G.GGB-----------SSSTTHHHHH-TH..HHHH CS
  PF02126.13 229 disddqkRirlvk.alvdrGyl.drillshDiltkfrslkkelvgvahaf..iltn 280
                 d ++d kRi+ +   l+++ ++ + il+s  i  kf++  +++ g+++a   ++ +
  MMETSP0890-20130614|5710_1 220 DEPNDLKRIAELStYLREKSLAlKNILISDGIRHKFQLRAYGGFGYGYAIniLQHH 275
                 5677888998775268899875388******************9999554324444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 1158.74
//
Query:       MMETSP0890-20130614|5716_1  [L=879]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-21   75.4   0.4    1.1e-09   38.1   0.0    3.2  3  PF00307.26 Calponin homology (CH) domain
    1.1e-12   47.9   0.1    3.7e-12   46.2   0.0    2.0  2  PF00169.24 PH domain
    0.00014   21.6   0.0    0.00063   19.5   0.0    2.2  1  PF04908.10 SH3-binding, glutamic acid-rich protein
      0.004   16.6   0.0        1.1    8.8   0.0    3.2  2  PF11971.3  CAMSAP CH domain
     0.0089   15.2   0.1      0.021   14.0   0.0    1.5  1  PF12090.3  Spt20 family


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.51   1.4e+03       5      19 ..      89     103 ..      86     140 .. 0.70
   2 !   33.5   0.0   1.1e-11   3.1e-08       6     104 ..     227     332 ..     222     336 .. 0.88
   3 !   38.1   0.0   4.2e-13   1.1e-09       7     106 ..     558     650 ..     546     653 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.51
                 HHHHHHHHTTSTCTS CS
  PF00307.26   5 lrWinkvlekleqsr 19 
                  rW+n++l+  ++s+
  MMETSP0890-20130614|5716_1  89 RRWMNELLQAQDESL 103
                 589999988774233 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 1.1e-11
                 HHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTS.........SSGGGSTCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHTST-HHHHHHHHHHH CS
  PF00307.26   6 rWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdl.........vdlediskclkesvadsleNlqlalefaeeklgvscvl..tledllysgnkknvlaflaeL 104
                 +Wi +vl+++  +++ + + + l+DG +L+ l h++   +         ++ +++  +++e  a +leN++l+l+++++ + +++    ++ dl++ +  ++vl  l++L
  MMETSP0890-20130614|5716_1 227 QWISNVLKEY--RPKSQVFWDWLKDGTILCRLAHALLKASvggiaadacINISKL--HRSERRAYHLENISLFLQACRHDFELPESRlfDALDLYDGTGTRQVLYSLHAL 332
                 8*********..78888999****************9988899999998899999..666789****************9999887777999999888888888888877 PP

  == domain 3    score: 38.1 bits;  conditional E-value: 4.2e-13
                 HHHHHHTTSTCTSSHS..HHHHHTCTSHHHHHHHHHHSTTSSSGGGS.TCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHTST-HHHHHHHHHHHHH CS
  PF00307.26   7 Winkvlekleqsrqve..nlskdlsDGvaLaallhkycpdlvdledi.skclkesvadsleNlqlalefaeeklgvscvl..tledllysgnkknvlaflaeLfr 106
                 Wi++v++            + ++l++Gv+L++l++ + pd+v  + + + +   +++ +++N++++l+ a++  gv++     + dl++  + ++v+++l++L +
  MMETSP0890-20130614|5716_1 558 WIEQVTGYV------FrlPFAEELKSGVILCKLINGIVPDTV--TRVyEGN---TAFGQMDNITTFLKYAKK-WGVRSSDafNTVDLYEGRDLNLVVQCLFALSN 650
                 555555433......02357899*****************75..6662333...78************8888.9***99999*****99*************987 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.4e-15   3.7e-12       3     102 ..       8      98 ..       7     100 .. 0.96
   2 ?   -3.7   0.0       4.6   1.3e+04      19      36 ..     361     378 ..     337     396 .. 0.52

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.4e-15
                 BEEEEEEEE.TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24   3 keGyllkks.ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                 ++G+l kk    + +w++ryf L+++ L++  +++   +++ + si++ +++v   ++       e++  f ++  ++ s++l a+s++er+rW++ l ++
  MMETSP0890-20130614|5716_1   8 YAGWLEKKNkINNASWRQRYFALRGQHLVCLSDPE---KEKIIASIDVVKVEVAGPDAD------EDDSIFNLKVLEG-SIKLRAPSADERRRWMNELLQA 98 
                 68*******99***********************9...7*******************8......7************.*****************99876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.6
                 EEEEEEETTEEEEESSSS CS
  PF00169.24  19 kryfvLtsnyLlyfkssk 36 
                 kr  +++++ ++++ s +
  MMETSP0890-20130614|5716_1 361 KRQQMFNNSFMHETVSIQ 378
                 333333344444444443 PP

>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.3e-07   0.00063       3      96 ..     756     842 ..     754     844 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.3e-07
                 EEEEE-TT---HCHHHHHHHHHHHCTTTT---EEEETTT-HHHHHHHHHHS.-CCCS---TT--S-EEEETTEE---HHHHHHHHCTT-HHHHH CS
  PF04908.10   3 lkvyvasssgskeikkkqqevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakeentleefL 96 
                 l v+++s+ ++ ++ k  ++ + +L akk +++ v +  + e+r ++r          +n+ plP  +  + +Y GDy++ +e ++   l e L
  MMETSP0890-20130614|5716_1 756 LVVWSSSTKSNLAMEKNERRLIALLAAKKKKYEMVYLDVSPERRIELRTIC------QDNEVPLPA-LTFGPDYHGDYEKLQELEDDGLLDELL 842
                 67999*******************************************655......467788875.666788*******99987777766665 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.02        55      21      80 ..     248     312 ..     234     317 .. 0.57
   2 !    8.8   0.0   0.00039       1.1      16      66 ..     571     617 ..     569     626 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.02
   PF11971.3  21 sDGvaLaalihfYcPklvp..ledic.....lketmsvadslyNlqllqefceekLgnkvseleled 80 
                 +DG +L+ l h +  ++v     d c     l ++   a  l+N++l+ ++c + +  + +e  l+d
  MMETSP0890-20130614|5716_1 248 KDGTILCRLAHALLKASVGgiAADACiniskLHRSERRAYHLENISLFLQACRHDF--ELPESRLFD 312
                 67777777777665554421111111001113345555667888888888888876..555555555 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00039
   PF11971.3  16 ltrdlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefce 66 
                 ++++l++Gv+L++li+   P+ v    +   e ++ + +++N+ ++ + ++
  MMETSP0890-20130614|5716_1 571 FAEELKSGVILCKLINGIVPDTVTR--VY--EGNTAFGQMDNITTFLKYAK 617
                 67899******************65..55..89999999999999987665 PP

>> PF12090.3  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.7e-06     0.021      71     112 ..     677     714 ..     651     733 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.7e-06
   PF12090.3  71 yeGclIvqirDyrstvaqssesee.saeneqqaktqksknqkk 112
                 ++ ++Iv + Dyr  +       + +++++qq+++q  kn ++
  MMETSP0890-20130614|5716_1 677 SNLKVIVAVNDYRDRNRR-----AiMQQQQQQQEQQAAKNLQE 714
                 6889*********93322.....24455555555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.29u 0.35s 00:00:01.64 Elapsed: 00:00:00.96
# Mc/sec: 2194.16
//
Query:       MMETSP0890-20130614|5724_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-38  129.3   0.0    1.6e-37  128.5   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.6e-06   27.6   0.0    9.4e-06   26.3   0.0    1.8  1  PF13207.1  AAA domain
    1.9e-05   25.0   0.8    6.5e-05   23.2   0.1    2.1  2  PF13191.1  AAA ATPase domain
    4.8e-05   23.3   0.0       0.01   15.8   0.0    3.3  2  PF13401.1  AAA domain
    9.4e-05   21.9   1.2    0.00047   19.7   0.6    2.3  2  PF13245.1  Part of AAA domain
    0.00011   21.1   0.0    0.00036   19.5   0.0    1.9  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00027   19.6   0.0    0.00043   18.9   0.0    1.2  1  PF06068.8  TIP49 C-terminus
    0.00044   19.8   0.0     0.0023   17.5   0.0    2.2  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00069   19.3   0.0     0.0015   18.3   0.0    1.5  1  PF13173.1  AAA domain
     0.0033   16.4   0.0     0.0088   15.1   0.0    1.7  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0042   16.4   0.0     0.0074   15.5   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
     0.0044   16.8   0.0      0.015   15.1   0.0    1.8  1  PF07724.9  AAA domain (Cdc48 subfamily)
     0.0055   15.7   0.1      0.015   14.2   0.0    1.8  2  PF06414.7  Zeta toxin
     0.0096   16.1   0.0      0.019   15.1   0.0    1.7  1  PF13238.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.1   0.4      0.041   13.1   0.3    2.1  1  PF13481.1  AAA domain
      0.014   15.1   0.1      0.053   13.2   0.0    1.8  1  PF13671.1  AAA domain
      0.026   14.0   0.0        0.2   11.1   0.0    2.3  2  PF07931.7  Chloramphenicol phosphotransferase-like protein
      0.054   13.3   0.0        0.1   12.4   0.0    1.5  1  PF13521.1  AAA domain
       0.08   12.2   0.0       0.24   10.7   0.0    1.8  1  PF00158.21 Sigma-54 interaction domain
      0.087   12.3   0.0       0.33   10.4   0.0    2.0  2  PF05729.7  NACHT domain
       0.11   11.9   0.0       0.24   10.8   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
       0.11   11.5   0.4       0.31   10.1   0.1    1.7  2  PF02562.11 PhoH-like protein


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   2.6e-40   1.6e-37       1     131 [.     237     381 ..     237     382 .. 0.98

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 2.6e-40
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.....SS..TTHCHHHHHHHHHHHHHTTTT.........S.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldgvkkk.........eskvivigatnrpdkldpallr.gRfdrkieie 131
                 vll+GppG GKTlla a a+e+gv+f++ s++ +++ +vg +++++r+lf +a+++a psi+fiDEida+a+sr     sg+ s+e+e+++nq+lteldg+++k         +++vi+i+atnrp+ ld+al r gR+dr++ ++
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAGVPFFSCSAAAFVEILVGRGAARVRDLFIKARTHA-PSIVFIDEIDAVARSRsassfSGGGSDEREQTLNQILTELDGFDEKfissskqqyKGPVILIAATNRPEILDSALTRpGRLDRIVSVP 381
                 79******************************************************9.********************9999*******************************999**************************9987 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.5e-08   9.4e-06       2      41 ..     237     287 ..     237     397 .. 0.65

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.5e-08
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B-.........-GGGS-B CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..ll.........reeglke 41 
                 +++tGppGsGK+ la + ae+ g+p +s+++  ++         r+++l +
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAGVPFFSCSAaaFVeilvgrgaaRVRDLFI 287
                 789**************************9963335554444443333332 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.8   2.4e+03     129     143 ..      61      98 ..      28     104 .. 0.50
   2 !   23.2   0.1   1.1e-07   6.5e-05      12      60 ..     216     271 ..     209     339 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3.8
   PF13191.1 129 r........................rpklvlvlDDlqwa 143
                 +                         ++lv +lD lqw+
  MMETSP0890-20130614|5724_1  61 AkgsvqrvligvdrvevkltngeryAARLVPWLD-LQWL 98 
                 2333333333333333333334444222888888.8886 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.1e-07
   PF13191.1  12 Llaalrrvse....gsp...lllvtGpsGiGKSsLlrelakpillerlrfaagkfd 60 
                 + ++l+r+ +    g +    +l+tGp+G+GK+ L+ ++a+++    +   a+ f+
  MMETSP0890-20130614|5724_1 216 IVEYLQRPERfisiGARcprGVLLTGPPGSGKTLLAAATAEEAGVPFFSCSAAAFV 271
                 555555444433332224589*****************555544443333333333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.1   6.8e+02      97     128 ..      40      76 ..      38      79 .. 0.65
   2 !   15.8   0.0   1.7e-05      0.01       7      49 ..     237     269 ..     232     364 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1.1
   PF13401.1  97 qrL...seealeelrslldd..etgvklvlvGtpele 128
                 qrL    ++ + +l++ + d  + +v+ vl+G+ ++e
  MMETSP0890-20130614|5724_1  40 QRLltrEASEMRLLSDVASDaaKGSVQRVLIGVDRVE 76 
                 77633224444455444444899*********99876 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.7e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast 49 
                 +++tG++G+GKT+l+   a++          a v f+ ++a +
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEE----------AGVPFFSCSAAA 269
                 799*************99995..........444444444444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         3   1.8e+03      41      62 ..     195     217 ..     189     228 .. 0.79
   2 !   19.7   0.6   7.5e-07   0.00047       9      33 ..     234     256 ..     225     283 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3
   PF13245.1  41 p.grsvllvaptgraakrlserl 62 
                 + g++ + va+ + a ++l+e +
  MMETSP0890-20130614|5724_1 195 QkGKGFCRVAGVDSAQRELAEIV 217
                 5588889999999****999976 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 7.5e-07
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaa 33 
                 ++++l+ tG+PG+GKT +laa+ a+
  MMETSP0890-20130614|5724_1 234 PRGVLL-TGPPGSGKT-LLAAATAE 256
                 556666.*********.55555444 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.8e-07   0.00036      53     115 ..     237     307 ..     183     312 .. 0.78
   2 ?   -2.7   0.0       3.4   2.1e+03      26      53 ..     340     367 ..     321     372 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.8e-07
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvle.........kagdlaalltnleekdvlfideihrlsr 115
                 vll+GpPG Gkt la   a+e gv + + s+ +           + +dl  + ++ ++  ++fidei  ++r
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAGVPFFSCSAAAFVeilvgrgaaRVRDLF-IKARTHAPSIVFIDEIDAVAR 307
                 9************************9988887643121111111333332.344556678999999987665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.4
   PF05496.7  26 yigqekvkeklkifieaakkreealdhv 53 
                 +i  +k + k  +++ aa +r e ld  
  MMETSP0890-20130614|5724_1 340 FISSSKQQYKGPVILIAATNRPEILDSA 367
                 5555555555556666666666666655 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.9e-07   0.00043      47      87 ..     231     269 ..     186     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.9e-07
   PF06068.8  47 klaGravLlaGppgtGktalaiaiskelgedvpfvalsgse 87 
                   + r+vLl+Gppg+Gkt la a ++e g  vpf + s++ 
  MMETSP0890-20130614|5724_1 231 ARCPRGVLLTGPPGSGKTLLAAATAEEAG--VPFFSCSAAA 269
                 457899*********************98..9999988865 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.7e-06    0.0023       1      79 [.     236     308 ..     236     370 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.7e-06
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG--.- CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEverae.s 79 
                 +vlL GppG+gK+ la   ae  + +++     ++   e l+gr       ++ +d  ++     ++i+++DE++ +  s
  MMETSP0890-20130614|5724_1 236 GVLLTGPPGSGKTLLAAATAEEAGVPFFSCSAAAFV--EILVGRGA-----ARVRDLFIKARTHAPSIVFIDEIDAVArS 308
                 59******************9999999876666643..34444444.....67777777777779999999999987744 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.4e-06    0.0015       5      74 ..     237     320 ..     234     352 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.4e-06
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe....llelfleklkekkkylflDEiqev..............p 74 
                 +++tGp ++GKt l+   a+e      + ++++  +++ ++   +    + +lf++  +   +++f+DEi  v              +
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAG----VPFFSCSAAAFVEILVGRgaarVRDLFIKARTHAPSIVFIDEIDAVarsrsassfsgggsD 320
                 79*************99997777....999999998885544222333478999998666889*******999555555555555554 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-05    0.0088      12      41 ..     224     253 ..     213     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-05
  PF01078.16  12 kraleiaaaGgHnlllvGppGsGKtmlakr 41 
                 +r + i a     +ll+GppGsGKt+la++
  MMETSP0890-20130614|5724_1 224 ERFISIGARCPRGVLLTGPPGSGKTLLAAA 253
                 6778888888899**************986 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05    0.0074      49      71 ..     236     258 ..     226     309 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.2e-05
  PF01695.12  49 nlvllGpsGvGKthlAialgvea 71 
                  ++l+Gp+G GKt lA+a + ea
  MMETSP0890-20130614|5724_1 236 GVLLTGPPGSGKTLLAAATAEEA 258
                 689***************99887 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05     0.015       6      84 ..     237     311 ..     235     335 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHH.HHTTT-HHHHT--..-EEEETGGG----..- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrli.gappgyvgaeegG..ivllDEidKihpk..e 84 
                 +ll+gp g+Gkt+la a+ae   v    ++    a ++ e      lv r     ++  ++a  +   iv++DEid ++++   
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAGV----PFFSCSAAAFVE-----ILVGRGAaRVRDLFIKARTHApsIVFIDEIDAVARSrsA 311
                 5899******************98....999999999999.....44444330334444444444467***********95331 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         4   2.5e+03     146     177 ..      45      74 ..      39      89 .. 0.69
   2 !   14.2   0.0   2.5e-05     0.015      16      40 ..     234     258 ..     218     271 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4
   PF06414.7 146 elaekgegRrvpkevhdeayeglpesvealea 177
                 +  e++e R++++  +d+a +++++++  +++
  MMETSP0890-20130614|5724_1  45 R--EASEMRLLSDVASDAAKGSVQRVLIGVDR 74 
                 3..33347999999999998888888877655 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.5e-05
   PF06414.7  16 pkavllgGqpGAGKtslaellleel 40 
                 p+ vll G+pG+GKt la ++ ee+
  MMETSP0890-20130614|5724_1 234 PRGVLLTGPPGSGKTLLAAATAEEA 258
                 899*****************99987 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.1e-05     0.019       1      23 [.     237     259 ..     237     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.1e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlg 23 
                 +l+tG+pG+GKt la + ae+ g
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAG 259
                 79***************999873 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   6.6e-05     0.041      27      55 ..     230     256 ..     212     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.6e-05
   PF13481.1  27 kgllprgsltllaGapgtGKStlalqlaa 55 
                 + ++prg  +ll+G+pg+GK+ la+++a 
  MMETSP0890-20130614|5724_1 230 GARCPRG--VLLTGPPGSGKTLLAAATAE 256
                 4566777..69*************98875 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.5e-05     0.053       2      25 ..     237     260 ..     237     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.5e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgy 25 
                 vll G+pGsGK+ la + +++ g 
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAGV 260
                 7899*************9999885 PP

>> PF07931.7  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.5   9.2e+02       5      32 ..     111     138 ..     108     141 .. 0.85
   2 ?   11.1   0.0   0.00033       0.2       4      52 ..     237     285 ..     234     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.5
                 EE-----------HHHHHHHSSS-EEEE CS
   PF07931.7   5 lLnGgsssGKsslaralqevldepwlhl 32 
                 +L+ ++s GK   a+++  +++  +l l
  MMETSP0890-20130614|5724_1 111 FLDETPSQGKKNFAKVIAVIAPIVYLGL 138
                 68889************99988877765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00033
                 EEE-----------HHHHHHHSSS-EEEE--HHHHHHS-GGGGT----- CS
   PF07931.7   4 ilLnGgsssGKsslaralqevldepwlhlgvDafvealppkrqdeadgl 52 
                 +lL G + sGK+ la a  e +  p++     afve l  +  +   +l
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEAGVPFFSCSAAAFVEILVGRGAARVRDL 285
                 89**********************************9988777766666 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016       0.1       2      31 ..     237     267 ..     236     301 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00016
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvvpEva 31 
                 + +tG+p++GKT l++a a++ g+p +   a
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEEaGVPFFSCSA 267
                 789**************99876888664444 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.24      17      63 ..     229     272 ..     214     278 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00039
                 HHTTS-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-H CS
  PF00158.21  17 kvaktdltvlitGesGtGKellAraiheaskrkkkpfvavncaaipe 63 
                   a+ +  vl+tG  G+GK+llA a  e   ++  pf +   aa+ e
  MMETSP0890-20130614|5724_1 229 IGARCPRGVLLTGPPGSGKTLLAAATAE---EAGVPFFSCSAAAFVE 272
                 55677788***************98654...4556777777777665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00053      0.33       3      23 ..     237     257 ..     235     271 .. 0.86
   2 ?   -1.7   0.0       2.8   1.8e+03      82      92 ..     328     338 ..     289     366 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00053
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 v+l+G++GsGKT L++  a++
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAEE 257
                 89************9987765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.8
   PF05729.7  82 rlLlilDglDe 92 
                 ++L  lDg+De
  MMETSP0890-20130614|5724_1 328 QILTELDGFDE 338
                 44444666666 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038      0.24      22      42 ..     235     252 ..     230     255 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00038
   PF13555.1  22 kgkntlltGasGsGKSTllDA 42 
                 +g  +lltG+ GsGK+ ll A
  MMETSP0890-20130614|5724_1 235 RG--VLLTGPPGSGKT-LLAA 252
                 45..9**********5.5444 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00049      0.31      22      41 ..     237     256 ..     225     260 .. 0.89
   2 ?   -2.1   0.0       2.6   1.6e+03     112     131 ..     286     305 ..     270     311 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00049
  PF02562.11  22 vfaiGpaGtGKTylavalav 41 
                 v+++Gp G+GKT+la a+a 
  MMETSP0890-20130614|5724_1 237 VLLTGPPGSGKTLLAAATAE 256
                 6789************9985 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.6
  PF02562.11 112 fmRGrTLddafvilDEaqnt 131
                 f+  rT + ++v++DE   +
  MMETSP0890-20130614|5724_1 286 FIKARTHAPSIVFIDEIDAV 305
                 678899999*******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.91u 0.41s 00:00:01.32 Elapsed: 00:00:00.64
# Mc/sec: 1726.13
//
Query:       MMETSP0890-20130614|5721_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-11   44.7   0.1    2.1e-11   44.0   0.0    1.3  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.6e-15   2.1e-11       1     251 []       6     309 ..       6     309 .. 0.66

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 1.6e-15
                 EEEEECE....................................CGTHCHHHHHHHTCG-SEEEEECC-TC.........................HHHHHHCHHCTTT-EEEE--------SEEEECTEEEEEEESCGCCEEEEEECTTSS-ECGGCEECCTCEEEEEEEEEECTEEEEEEECHHHCTSSTTSHHHHHHHHHH.HHHHCCHHHH.SEEEE---S--BSSGH............................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB.....--S--EEBHHHCCCCEEEEECTHHCHS.............SSS CS
  PF03372.18   1 ltwNvlg.............................wnarsdrakkldqladllqsedpDvllLQEvded.........................plsellatglasglglagdgkvggggggdalgggglallskypldksirrtfqldgkagiavprlssknkgdvpvrfrggktlalvntHltpgnrlrqrderallaei.dkladdsrgs.pvilaGDfNsrpdspd............................kgfrenaadflpgdgfddglrallphlllptspgttdtyekagepa.....rlDyilvssgwpalvvsgalllpdrgg.............SDH 251
                 +t+N+l+                             w +r d+   ++++ +l q+   D++++QEv+++                         +l+  ++ +l+  +                  + + +++ +++ + s+ +  +     + +         ++            ++n+Hl +g + ++  + +++++i +++  +++   +++++GD+N++++  +                            +g++e+++  ++     ++   l++ +l++ ++g+t +  ++++        lD+i++    + l  ++al+ ++ ++             SDH
  MMETSP0890-20130614|5721_1   6 ATYNILAplyvrpidkrlgtvqpfaafewcedhvleWDRRRDQ--LKKRISKLCQE--NDIVCFQEVEYEenfqppkwlldacgslkvvtvpsvrDLERNAERNLRVLGV---------------RHAVANMIVCRFEPQWSKASGTTQLAIDHNG---------WV------------VINVHLDAGDERKR--LDTVFKAIaNARLVRGP-MsRIVICGDWNAELRPASvlgtllctsrdckvtkedeeserviarfDGDFEEWRALRAA---TRAASSLSSLELIRVNSGPTRCGFDHDGSKrivswNLDHIIY---DRKLAQVTALEANPLDStsltigipnevepSDH 309
                 79*****888888888887777777777666666555555544..33335566666..78*******9988888888888888877777775554333333333333332...............224569******9999999998555333333.........22............********998887..66666666244444444.359************999***************99888888887774444444333322...2344445555567777777777777755553333377*****...555555555555555555577777778888999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.66
# Mc/sec: 1662.93
//
Query:       MMETSP0890-20130614|5726_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-14   51.4   0.2    1.7e-09   37.6   0.1    2.5  2  PF00615.14 Regulator of G protein signaling domain
      1e-05   25.5   0.1      0.023   14.8   0.0    2.7  2  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   2.5e-13   1.7e-09       7      86 ..     226     307 ..     223     337 .. 0.85
   2 !   11.1   0.0   4.3e-05      0.29      47     112 ..     378     438 ..     368     440 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.5e-13
                 TSS---HHHHHHHHTTTTHHHHHHHHHHHHHCTS..--HHHHHHHHHHHHHHHTSSSSTTSSTS-HHHHHHHHHHTCS..-- CS
  PF00615.14   7 edqpgrslFreFlesefseenleFwlaveefkka..keqeelskkakeIynkylapsspkelnidkklreeleknlekaqps 86 
                 +++  r   ++Fl ++ ++e ++Fw+ave +++   + +  +++ ak+I+ +++a+++p+++ ++ ++r++++++le   ++
  MMETSP0890-20130614|5726_1 226 ASSFARAQLKNFLIEQLASEVIDFWQAVETLRRIvaSGSGARKRIAKQIFAEFVADGAPRQVTLSAEIRAQTQRQLEAFVQT 307
                 556678999*************************98888889999******************************9986333 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHTSSSSTTSSTS-HHHHHHHHHHTCS..--TTTTHHHHHHHHHHHTTHHHHHHHCS CS
  PF00615.14  47 skkakeIynkylapsspkelnidkklreeleknlekaqpsrklfeeaqeevfrllekdsypkFlks 112
                 +++ + I+++y    +p  + ++kk  ++++   ++  +++++f+ a ++v   le+d+ ++F ++
  MMETSP0890-20130614|5726_1 378 KSDTQLILENYT---APPAVAVSKKKQNNCALPGQE--KCPTCFDTALKQVIIALEQDALSRFATT 438
                 566788999999...889999999999999999988..9************************876 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00045       3.1      26     102 ..      55     205 ..      13     207 .. 0.66
   2 !   14.8   0.0   3.3e-06     0.023      41     102 ..     511     569 ..     471     571 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00045
                 T....TEEEEESSSST.......TCECSECEEEECGGEEEEEEEETTS.........................................S......................CTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24  26 s....nyLlyfksskk.......ksykapkgsiplndctvkkasstkf.........................................a......................lqkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                      +yL+ +++++          ++ +k +i ++  ++  +s + +                                                                l +  n+ f++ +  +  + l + + +e+  W++al+ +
  MMETSP0890-20130614|5726_1  55 VvdgiSYLYGWEDDTIifsgrvgDDAFGLKEKIGIDAWDIVVWSINSNdlcsdhipnisndeirtrksesgkqisstssrrlsgkyysaDdvfskfqnkvvscfpgggrnqgLAPLGNYQFQVETAATGILQLACRTRYELGMWIDALRIA 205
                 455566666666666566666665555555555565555665655555555555555555555555555445577666666665555540455555556666666666654448899*******************************865 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.3e-06
                 CSECEEEECGGE.EEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
  PF00169.24  41 kapkgsiplndc.tvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                  + +++i++ ++ t+ + +s+    +    + ++++ +++ ++++sa+++ +r +Wv+ ++++
  MMETSP0890-20130614|5726_1 511 DNEIHMISVIGVeTIIDSKSS----TGGFSFALRLNDTSGARLIFSAPNAADRDAWVDLIRQA 569
                 467889999999888888887....477777777777777******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:00.81
# Mc/sec: 2047.26
//
Query:       MMETSP0890-20130614|5725_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-38  129.9   0.2    1.2e-37  129.0   0.1    1.4  1  PF00009.22 Elongation factor Tu GTP binding domain
    5.4e-37  125.5   0.7    1.3e-36  124.3   0.5    1.7  1  PF09173.6  Initiation factor eIF2 gamma, C terminal
    2.6e-12   46.5   5.1    5.6e-12   45.5   0.4    3.0  3  PF03144.20 Elongation factor Tu domain 2
     0.0026   17.6   0.0     0.0059   16.4   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
     0.0054   16.4   0.2      0.018   14.7   0.2    1.8  1  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.1   4.3e-41   1.2e-37       2     187 ..      23     232 ..      22     233 .. 0.93

  Alignments for each domain:
  == domain 1    score: 129.0 bits;  conditional E-value: 4.3e-41
                 GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE......................................T...ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.S-HHHHHHHHHHHHTT--.EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHSC CS
  PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle......................................k..etkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqTeevlrlakklgvk.iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivellp 187
                  ++nig+ighv hGK+T+++a+  ++               + ++k+e er+iTik+++++++                                      +   +  r+++++D+PGH+  ++++++g++v+D+a+l+v+ +e  ++pqT e+l +++ ++++ ii+++NK+D+v+ ++   ++e  +k++  ++ ++   +p++p+Sa+ ++++d ++e++v+ +p
  MMETSP0890-20130614|5725_1  23 ATINIGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKiykkkkentdeeeeilepganftsrgsstpdiyydektQssWELVRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPcPQPQTSEHLAAVEIMRLEnIIILQNKVDLVKPDAALAQHEQIRKFVAGTVADA---APIIPISAVLKYNVDCVCEYLVHAIP 232
                 679********************666...............899*********************************************9999998877651658889************************************99******************************9999888888888**99998876...7*********************9887 PP

>> PF09173.6  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.5   4.8e-40   1.3e-36       1      88 []     357     448 ..     357     448 .. 0.98

  Alignments for each domain:
  == domain 1    score: 124.3 bits;  conditional E-value: 4.8e-40
                 EEEEEEE----SBE----S.....-EB-----TT---EEE----EE---EEEE-SSEEEEEEEEEEE-SSSS--EEEEE----EEE-----E CS
   PF09173.6   1 yteleieykllerlvgvke....keakveklkkkEvlmlnvgsattggvvtavkkdevkveLkkPvcaekgekvaisrrvekrWrLigwGti 88 
                 + e+ei+++ll+rl+gvk     k+akv+kl+k+E+lm+n+gs+ tgg+v avk+d +k+ L++Pvc+ +gek+a+srrv+k+WrLigwG+i
  MMETSP0890-20130614|5725_1 357 FIEVEISFYLLRRLLGVKAqegsKQAKVQKLQKQEILMVNIGSTATGGKVLAVKNDLAKIVLTTPVCTIEGEKIALSRRVDKHWRLIGWGQI 448
                 6799**************999*********************************************************************98 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5     4e+03      15      52 ..      58      90 ..      55      92 .. 0.58
   2 !   45.5   0.4     2e-15   5.6e-12       1      73 [.     264     347 ..     264     348 .. 0.94
   3 ?    1.7   0.1     0.093   2.5e+02      11      23 ..     446     458 ..     445     467 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.5
                TTEEEEEET.TTCTEEEEEEEEEEEEETTCEESEE..ECEE CS
  PF03144.20 15 kGdtvrilg.ndtskkeivtrvrsletfngdldea..vaga 52
                ++ t+ ++  n        +++ + +++n d++e+  ++ga
  MMETSP0890-20130614|5725_1 58 RNITIKLGYaN--------AKIYKKKKENTDEEEEilEPGA 90
                55555552222........6777777777777776445555 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 2e-15
                 EEEEEEEEEE--EETTEEEEEETTTCTEEE.........EEEEEEEEEETTCEESEEECEE--EEEESSSGGGG..GTT---EE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskke.........ivtrvrsletfngdldeavaganaGvivaikgled..aiikGdtl 73 
                 G va+g++ +G+l++Gd++++++  + k++         i++r++sl++++++l+ av+g  +Gv + i+++ +  +  +G++l
  MMETSP0890-20130614|5725_1 264 GGVAGGSILQGVLRVGDEIEVRPGIVLKDNqsgtitctpILSRITSLFAEQNPLQYAVPGGLIGVGTHIDPTLTraDRLVGQVL 347
                 89*********************66777779****************************************9999888999998 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.093
                 --EETTEEEEEET CS
  PF03144.20  11 GtlkkGdtvrilg 23 
                 G++++G +v+i++
  MMETSP0890-20130614|5725_1 446 GQIRRGAKVEIVR 458
                 99*********77 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0059       2      91 ..      27     155 ..      26     194 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-06
                 EEEE--TT---HHHHHHHH.............CST.......CTEETS-TT-SSSESEEEE......................ETTE........EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS..HH CS
  PF01926.18   2 vaivGrpNvGKStLinaLt.............gek.......aakvsdypgtTrditenev......................kkek........iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa..vl 91 
                 ++ +G+   GKSt+++a++             +         +ak+++++ + +d +e+ +                      +  +        + +vD+PG        + i+ ++ +l  +  +d++ll+v  ++  ++
  MMETSP0890-20130614|5725_1  27 IGTIGHVAHGKSTVVKAISgvqtvrfknelerN-ItiklgyaNAKIYKKKKENTDEEEE-IlepganftsrgsstpdiyydekT--QsswelvrhVSFVDCPGH-------D-IL-MATMLNGAAVMDAALLLVAGNEpcPQ 155
                 7889**************833333332222220.0112222233344444444444232.124444456666667777766431..24457766556******2.......3.44.44577778888888888886555522 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   6.4e-06     0.018       1     111 [.      27     126 ..      27     137 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.4e-06
                 EEEE--TT---HHHHHHH-----------------EEEEEEE------------E-EET-----CHHHHHHHHHHH-----------SS-EEEEEEETTS-SEEEEE---- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeraseravkeevkeeekkledfdevreeieketeklagankgiskkvillkilsllvkgltlvDtPGl 111
                 i  +G++ +GKS++++a+ g +  +r ++   r+ ++++lg  +        ++ ke+++++e++ e   +++ + +       +i    +  +   +lv ++++vD PG 
  MMETSP0890-20130614|5725_1  27 IGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERN-ITIKLGYANAK----IYKKKKENTDEEEEILEPGANFTSRGSSTP----DI-YYDEKTQSSWELVRHVSFVDCPGH 126
                 5679******************.45555555554.56788886662....223333334444444444444443333333....22.122334444556777788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.62
# Mc/sec: 1820.46
//
Query:       MMETSP0890-20130614|5727_1  [L=1027]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-26   93.0   0.0    2.3e-26   92.4   0.0    1.3  1  PF00069.20 Protein kinase domain
    2.5e-22   79.1   0.0    4.1e-22   78.4   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    2.6e-09   37.2   0.1    4.8e-09   36.3   0.0    1.5  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     5e-30   2.3e-26      13     200 ..     299     497 ..     291     576 .. 0.87

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 5e-30
                 EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.......HHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT...CEE-S--SGGGEEEETT--E..EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTT CS
  PF00069.20  13 GkVykakkkktgkkvAvKilkkeeekskkektavr.......ElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsn...giiHrDLKpeNiLldkkgel..kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfs 200
                 G+Vy a+  + g+ vAvK l+  + +++ + +++        E++ l+kl  +n+++ll++ +   ++ +lv e++ gg+l + l+  ++ls+ e   ial  ++gl +lH +   + +H D+ p+Ni+l+  ++l  k+a FGla+++ ++ +++ +  gt+ Y+ PE  + +   + + D++++Gv+l +lltg++   
  MMETSP0890-20130614|5727_1 299 GTVYAARLPEVGD-VAVKWLRVGDDHEDVNVATRVneanffrEVQTLAKLVDSNVIRLLGFAHGtGTDRFLVYELCAGGSLESRLAGTQTLSWGERLLIALDAARGLFFLHAHgecKYVHGDVTPSNIMLSAPSVLpaKLAEFGLAREIDRTLTHVISPGGTEGYVCPERKR-NGSLSLSGDIYAMGVTLLNLLTGQPTAI 497
                 78**********7.********99999998776558999*********************987669999******************************************988889**************8888899********************************99.999********************97654 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0     9e-26   4.1e-22      13     205 ..     299     496 ..     291     542 .. 0.81

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 9e-26
                 --EEEEEEETTTTSSEEEEEEEEECTTSBHHH........HHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHT...TEEEST-SGGGEEEETTT..EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GT CS
  PF07714.12  13 GkVvegtlkgekekkevkVavKtlkesaeeee........keefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLesk...klvHrdLaarNvLleeek..vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp 205
                 G+V+ ++l      +  +VavK l+ ++++e+        +++f++e++++ kl  +n+++llg+   ++   ++v e+++gG+L++ L  +  ++l+  + l +al+ a+G+ +L+++   k+vH d++  N++l+  +    k+++fGLar+i  d + ++  +      ++ pE  ++++++   D+++ Gv+l  ++t   + 
  MMETSP0890-20130614|5727_1 299 GTVYAARLP-----EVGDVAVKWLRVGDDHEDvnvatrvnEANFFREVQTLAKLVDSNVIRLLGFAHgTGTDRFLVYELCAGGSLESRLAGT--QTLSWGERLLIALDAARGLFFLHAHgecKYVHGDVTPSNIMLSAPSvlPAKLAEFGLAREI--DRTLTHVISPGGTEGYVCPERKRNGSLSLSGDIYAMGVTLLNLLTGQPTA 496
                 456666666.....7889*****98655555434444444899************************767779*****************97..9**********************873336**************9773368***********..5555555555677789****************************955444 PP

>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.1e-12   4.8e-09      30     251 .]     671     936 ..     633     936 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.1e-12
                 -SEEE..EECC-TCHHHHHHCHHCTTT-EEEE--------SEEE......ECTEEEEEEESCGCCEEEEEECTTS..........S-ECGGCEECCTCEEEEEEEEEECTEEEEEEECHHHCTSSTTSHHHHHHHHHHHHHHCCHHHH..SEEEE---S--BSSGH........................................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB--S--EEBHHHCCCCEEEEECTHHCHS...........SSS CS
  PF03372.18  30 pDvll..LQEvdedplsellatglasglglagdgkvggggggda......lgggglallskypldksirrtfqld..........gkagiavprlssknkgdvpvrfrggktlalvntHltpgnrlrqrderallaeidkladdsrgs..pvilaGDfNsrpdspd........................................kgfrenaadflpgdgfddglrallphlllptspgttdtyekageparlDyilvssgwpalvvsgalllpdrgg...........SDH 251
                 +D+++   QE +  +++  +++ +++      d  ++++ + d+        g  l+++ + + + +i ++ ++                 +++  s   g            ++ n+Hl++g++  + + +a+l+  +++ad s+++   ++++GD+N+r++                                           +gf++++++flp++++++                ++++y+  + p+++D++ + s++++lv+ + ++   +++           SDH
  MMETSP0890-20130614|5727_1 671 ADIVVigTQECFSKANPREFTNLVNAVQKHFVDVSPCAYEYVDSassghtRLGMRLMIFIRSD-RLKIESVAKDAltagglfkgaL----SAFVVVSDAAGRR-------SAYVFANCHLPSGEGRVDDRNAAVLRVKQRIADLSPDGaaTMFIFGDLNYRSNPALnlalapisaasvaelaaqrnlnalysldelrqqldlggclEGFQSPKPTFLPTSRLERR---------------PGFHYSLSRLPSYTDRVVFASTGASLVDHSGHAKMRVNCldydavgevalSDH 936
                 78777779***99988888886666665545555566666666677888889999******74.4444444433332344433331....2222222222222.......223399*******999999999999999999999999999*************999***************************************************99988443...............347788889999*******4444444433333322222245577777777888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.44u 0.41s 00:00:01.85 Elapsed: 00:00:00.91
# Mc/sec: 2704.46
//
Query:       MMETSP0890-20130614|5732_1  [L=1601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-107  356.6   0.0    4.1e-78  261.3   0.0    2.4  2  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
    3.6e-49  165.4   0.0    1.2e-48  163.8   0.0    1.9  2  PF00988.17 Carbamoyl-phosphate synthase small chain, CPSase domain
    3.1e-44  150.6   0.0      1e-43  148.9   0.0    1.9  2  PF00117.23 Glutamine amidotransferase class-I
    2.3e-36  124.0   0.7    2.3e-34  117.6   0.5    2.7  1  PF02787.14 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
    3.9e-33  113.7   0.0      5e-19   68.3   0.0    3.5  2  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
    7.1e-31  107.2   0.2    6.9e-19   68.1   0.0    2.6  3  PF13535.1  ATP-grasp domain
    9.3e-17   60.7   0.0    3.8e-10   39.2   0.0    2.3  2  PF02222.17 ATP-grasp domain
    1.8e-11   43.7   0.2    2.2e-06   27.0   0.0    2.6  2  PF07478.8  D-ala D-ala ligase C-terminus
    1.9e-09   37.1   0.0    1.4e-08   34.4   0.0    2.6  2  PF02142.17 MGS-like domain
    1.1e-07   31.4   0.1    1.4e-05   24.5   0.1    2.5  1  PF07722.8  Peptidase C26
      7e-06   25.8   0.1      0.068   12.9   0.0    3.0  2  PF02655.9  ATP-grasp domain
    2.5e-05   23.8   0.0       0.12   11.7   0.0    2.7  2  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
  ------ inclusion threshold ------
      0.012   14.7   0.0        5.6    6.0   0.0    2.5  2  PF13549.1  ATP-grasp domain
      0.082   12.2   0.0       0.24   10.7   0.0    1.7  1  PF01965.19 DJ-1/PfpI family
        0.1   12.2   1.3         26    4.5   0.0    3.6  4  PF02789.12 Cytosol aminopeptidase family, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.3   0.0   4.5e-81   4.1e-78       1     208 [.     577     783 ..     577     786 .. 0.98
   2 !   92.9   0.0   1.6e-29   1.5e-26       1     206 [.    1164    1362 ..    1164    1365 .. 0.92

  Alignments for each domain:
  == domain 1    score: 261.3 bits;  conditional E-value: 4.5e-81
                 SHHHHHHHHHH---BB---B-B..SSHHHHHHHHHH----EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEE..TTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH----C CS
  PF02786.12   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekL 208
                 D++ ++++lk+in+++++s +a  +++++al++a++igyPv+++aaf+lGG+G+++a++e+el+el+++al++a      +q+l++k l+g+ke+E+ev+rD ++n+itvc++en+++l  +t+++i+vAPsqtLt++e+ +lr++a+kvvr++g++g+++++++l+pks++ ++iEvN+Rls++sala+kaTG++l+++a k++lg++L
  MMETSP0890-20130614|5732_1 577 DRQIFSNTLKQINERLAESYSA--NSVDQALEAARKIGYPVLVRAAFTLGGLGSGFAENEDELQELATSALSHAG-GNDGAQILIDKDLRGWKEVEYEVVRDVRDNCITVCNMENFDPLgvHTGDSIVVAPSQTLTNREYFKLRATALKVVRHLGIIGECNIQYALNPKSEDACIIEVNARLSRSSALASKATGFPLAYVATKLSLGHDL 783
                 9*********************..**************************************************6.666689*****************************************************************************************************************************998 PP

  == domain 2    score: 92.9 bits;  conditional E-value: 1.6e-29
                  SHHHHHHHHHH---BB---B-B..SSHHHHHHHHHH----EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEE..TTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH--- CS
  PF02786.12    1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialge 206 
                  D+++++++l++i+v+  p  +   +++ +a+++a+++gyPv+++++f l G  m+va++ +el+  +++a++ ++    ++ v v k++++ keiE++ ++  +g ++  +  e + +   + ++   v P+q L  ++ +++++ a k+++++ ++g  +++ +    +++  viE N R s++ +  +k+   + +  a ++ lg 
  MMETSP0890-20130614|5732_1 1164 DRHKFSAMLDEIGVDQPPWREL--QSTADAISFAERVGYPVLVRPSFVLSGAAMNVASSAAELTSFLNEASDVSP----DHPVVVSKFIQNAKEIEFDAVAS-DGHILNYAISEHVENAgvHSGDATLVLPAQKLYVQTQKQVKRIASKIAKHLRISGPFNIQLMAR--ENDVKVIECNLRASRSFPFLSKTLNCNFISLATRVMLGV 1362
                  99****************9999..9*************************************************6....9*****************98873.455555555555555455******************************************9887..699********************9999999999998886 PP

>> PF00988.17  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0   1.3e-51   1.2e-48       2     130 ..      35     173 ..      34     174 .. 0.98
   2 ?   -2.9   0.0       4.4     4e+03     106     123 ..     195     212 ..     188     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 163.8 bits;  conditional E-value: 1.3e-51
  PF00988.17   2 kavLvLedgtvfeGesfgaegeavGEvvfntsmtGYqeiltdpsYagqivvftypliGnyGvneed..........leskkiavkglivrelseepsnwrseesleeflkeegipgisgvDTRalvrklrekGamkgvi 130
                 ka LvLedgtv eG+sfg+ ++++GEvvfnt+m+GY e+ltdpsY+gqi+v+typliGnyGv++ +          +es++++++gl+v+++se++s+w s+ sl ++l+++g+p+i+gvDTR+l++++re+Ga+ g +
  MMETSP0890-20130614|5732_1  35 KAKLVLEDGTVCEGYSFGSGSSRSGEVVFNTGMVGYPEALTDPSYRGQILVLTYPLIGNYGVPSMEerddfdlpkyFESDQVQIAGLVVATYSEDHSHWASSGSLGAWLEASGVPAIHGVDTRRLTKNIRESGALLGWL 173
                 899***********************************************************9998899*****************************************************************98875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4.4
  PF00988.17 106 pgisgvDTRalvrklrek 123
                   +++v T+++++++r+k
  MMETSP0890-20130614|5732_1 195 HLVAEVSTKKVTKYVRSK 212
                 578999*********987 PP

>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   1.1e-46     1e-43       3     190 ..     234     412 ..     232     414 .. 0.95
   2 ?   -4.0   0.0       8.3   7.5e+03      39      51 ..     528     540 ..     513     550 .. 0.71

  Alignments for each domain:
  == domain 1    score: 148.9 bits;  conditional E-value: 1.1e-46
                 EE-S-SSHHHHHHHHHHTT.-EEEEEETTGGHHHHHHTTT--SEEEEE----TTTT-CCHHHHHHHHGT.TTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTTSCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS-GGGHHHHHHHH CS
  PF00117.23   3 iDnydsvtknleralrelg.vkvevvpndadaeeileklsnpdgilisgGpgspgevegkieaikeare.nkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgkaallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssstpggpellfnfll 190
                  D++  +++n++r+l+++  v++ vvp+d+d e+++++   +dgi+ s+Gpg+p+++e +i+++k++++ ++iPi+GICLG+Qlla++ g+k +k+k ++++g n+++ +         + +++ ++++H+y++++  +lp ++  ++ ++++ ++++i++ ++p+++vQFHPE+ ++p ++++lf+ + 
  MMETSP0890-20130614|5732_1 234 FDCG--MKYNIIRYLVSVHdVELYVVPHDYDLETNIDNIPPYDGIFCSNGPGDPARCEATIQTLKKLITqQDIPIFGICLGHQLLALAAGAKSYKMK-YGNRGMNQPCVD-------LRTTRCYMTSQNHGYAIDD-TTLPCEWRPLFVNANDHSNEGIIHTSKPFFSVQFHPEAAGGPIDTAFLFDSFA 412
                 6899..***********999***********9999987789**************************9989**************************.9**********9.......6667**************7.99***********************************************9986 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 8.3
                 TTT--SEEEEE-- CS
  PF00117.23  39 klsnpdgilisgG 51 
                 k++++dgi++s G
  MMETSP0890-20130614|5732_1 528 KEKDIDGIIVSMG 540
                 46789*****977 PP

>> PF02787.14  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.5   2.5e-37   2.3e-34       1     121 []     891    1038 ..     891    1038 .. 0.92

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 2.5e-37
  PF02787.14    1 leeklkkptderlfaiaealrrgvsveeiheltkidpwFleklkeiveleeelkk...........................eelleellreaKklGfsDaqiakllgvteeevrklrkelgikpvykrvDtcAaeFeaktpylYsty 121 
                  le++lk+p+d+rlfa+  a+++g+s++++heltkid+wFl+kl++i++l   +++                           e l  + +r++K+ GfsDaqia ++++te+ vr++r +lg+kp++k++Dt+++e +a+t+ylY+ty
  MMETSP0890-20130614|5732_1  891 LEQRLKQPNDQRLFAVQLAFEKGYSIDKVHELTKIDRWFLAKLRRIARLRVAVETrfaqqvtenhntlmrssvgsggisasiEALGYDAMRKLKQAGFSDAQIASYARCTEARVRRARLALGVKPAVKQIDTLGGEVPARTNYLYMTY 1038
                  5899******************************************999988888888899999999999999988876554444444***********************************************************9 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   3.9e-13   3.6e-10       2     110 .]     437     572 ..     436     572 .. 0.89
   2 !   68.3   0.0   5.5e-22     5e-19       3     110 .]    1050    1159 ..    1048    1159 .. 0.97

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 3.9e-13
  PF00289.17   2 ikkvlianrGei...........avriiralrelgietvavnsnpdtvstdvrladelyflgpaeas.......esYl...dveaildiaeke....gvdavhpGygflsenaelaeace..kagvkfiGpsaeai 110
                 +k+vl +++G             + ++i+al+e+g++++++n n +tv+t  +  +   fl+p++++       + Yl   +++ +++++ ke    g+++ ++G+++l++  el ++++  k+gv+++G++++ai
  MMETSP0890-20130614|5732_1 437 LKRVLLLGSGGLsigqagefdysGSQAIKALKEEGLQVILINPNIATVQTSRDDDNPGQFLNPHAQNwggacadHVYLlpvTADWVRRVLDKEkdidGIIVSMGGQTALNVGVELWKSGDlqKRGVRVLGTKIDAI 572
                 689*******9999************************************888887777777555556777777777544499**********99999*******************999989*********9997 PP

  == domain 2    score: 68.3 bits;  conditional E-value: 5.5e-22
  PF00289.17    3 kkvlianrGei...........avriiralrelgietvavnsnpdtvstdvrladelyflgpaeasesYldveaildiaeke...gvdavhpGygflsenaelaeacekagvkfiGpsaeai 110 
                  + v+++++G +           av+++r +r  g+++++vn+np+tvstd++ +d+lyf++        l++e++ldi+e+e   g ++ ++G++++++++ l+    + gv+++G+s++ i
  MMETSP0890-20130614|5732_1 1050 RAVIVLGCGAYcigssvefdwsAVSCVRQCRASGYRAIVVNCNPETVSTDYDVSDRLYFEE--------LSLERVLDIYEQEsawGLVVSVGGQIPNNLAKPLH----DCGVHILGTSPQDI 1159
                  6799*********************************************************........*************9999******************....699*******9876 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   4.3e-12   3.9e-09      20     182 ..     593     758 ..     580     760 .. 0.85
   2 !   68.1   0.0   7.6e-22   6.9e-19       2     180 ..    1162    1337 ..    1161    1340 .. 0.91
   3 ?   -3.6   0.0         8   7.3e+03      66      91 ..    1566    1594 ..    1553    1598 .. 0.52

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 4.3e-12
   PF13535.1  20 prfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeve.ldegeflvEeyieG.deysvdglvl.dgel.vflgisryletsppdfsdgaelgsvspseepleealrelaerllkalglkngvfHlEfkltpd.GrlvliEinaRpgGa 182
                 ++++++ s +++ +aa++ig+pv +  a   g lg  ++++++el+++++ + ++    d+ ++l+++ + G  e+ ++++ +  +++  ++++   + +   + +d++ + + +  ++ +  +lr+ a +++++lg+  g +++++ l+p+  ++++iE+naR+  +
  MMETSP0890-20130614|5732_1 593 AESYSANSVDQALEAARKIGYPVLVRAAFTLGGLGSGFAENEDELQELATSALSHAGgNDGAQILIDKDLRGwKEVEYEVVRDvRDNCiTVCNMENFD-PLGVHTGDSIVVAPSQTLTNREYFKLRATALKVVRHLGI-IGECNIQYALNPKsEDACIIEVNARLSRS 758
                 5678899999**************************************77765555589*************99*****9999978883444444444.33666666677777778888888****************.*************************9765 PP

  == domain 2    score: 68.1 bits;  conditional E-value: 7.6e-22
   PF13535.1    2 lrdKllmrellaeaglpvprfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyieG.deysvdglvldgelvflgisryletsppdfsdg...aelgsvspseepleealrelaerllkalglkngvfHlEfkltpdGrlvliEinaRpg 180 
                  + d +++ ++l+e g+++p++++++s +d+ ++ae++g+pv + P+   +     ++++aael+++l+++++ ++  +++++v ++i+   e+ +d++ +dg ++   is+++e+   + +d     + +   ++++   +++++ a++++k+l +  g+f+++++ ++++ +++iE+n R  
  MMETSP0890-20130614|5732_1 1162 AEDRHKFSAMLDEIGVDQPPWRELQSTADAISFAERVGYPVLVRPSFVLSGAAMNVASSAAELTSFLNEASDVSP--DHPVVVSKFIQNaKEIEFDAVASDGHILNYAISEHVENAGVHSGDAtlvLPAQKLYVQTQ---KQVKRIASKIAKHLRI-SGPFNIQLMAREND-VKVIECNLRAS 1337
                  67999**********************************************************************..***********55*************************9988777654333333333333...9***************.************97.9********86 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 8
   PF13535.1   66 aalealaaeve...ldegeflvEeyieGd 91  
                   ++eal ++ +   l++++f v+e+ +G 
  MMETSP0890-20130614|5732_1 1566 LFVEALVRSLNdpvLRTTPFHVDEFYSGA 1594
                  34444444444444556666666666555 PP

>> PF02222.17  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.3e-07   0.00057       3     149 ..     587     743 ..     585     758 .. 0.84
   2 !   39.2   0.0   4.1e-13   3.8e-10       2     156 ..    1173    1331 ..    1172    1339 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 6.3e-07
                 T-------EEEEEHH.HH----------EEEEES-------------------------.......---EEEEEE----SEEEEE---B-----B----EEEEEE----EE...EEEEEEE.....--HHHHHHHHHHHHHTT-----EEEEEE---- CS
  PF02222.17   3 elglpvprflaveskeeleeaveelglpvvvKarrlgydGkGqsvvkseeeleqaleal.......keeklivEefvpfekElsvlvvRsveGevafypvvetvqkdgilr...lsvapaevsek.qqkkaeeiakkiveeLggvGvlavElFvledg 149
                 + + ++++++ ++s +++ ea++++g+pv+v+ +     G G+ ++++e+el+++++++       ++ ++++ +     kE+   vvR+v+ +++++  +e+    g+     ++vap+++ ++ +  k  ++a k+v++Lg++G   +   +  ++
  MMETSP0890-20130614|5732_1 587 QINERLAESYSANSVDQALEAARKIGYPVLVR-AAFTLGGLGSGFAENEDELQELATSAlshaggnDGAQILIDKDLRGWKEVEYEVVRDVRDNCITVCNMENFDPLGVHTgdsIVVAPSQTLTNrEYFKLRATALKVVRHLGIIGECNIQYALNPKS 743
                 6666789999**********************.88999****************9999999****9999***********************99999999999998888743337888877655426778889999********99777766555555 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 4.1e-13
                  HT-------EEEEEHH.HH----------EEEEES-------------------------....---EEEEEE----SEEEEE---B-----B----EEEEEE----E....EEEEEEEE....--HHHHHHHHHHHHHTT-----EEEEEE-----.EEEEE CS
  PF02222.17    2 eelglpvprflaveskeeleeaveelglpvvvKarrlgydGkGqsvvkseeeleqaleal....keeklivEefvpfekElsvlvvRsveGevafypvvetvqkdgil....rlsvapaevsekqqkkaeeiakkiveeLggvGvlavElFvledgeellvnE 156 
                  +e g+  p++  ++s +++ +++e++g+pv+v+ +    +G    v+ s++el+++l+++     +++++v +f++  kE+   +v + +G++  y + e+v++ g+      l++  +++  + qk++++ia+ki+++L + G + + l + e++  + v E
  MMETSP0890-20130614|5732_1 1173 DEIGVDQPPWRELQSTADAISFAERVGYPVLVR-PSFVLSGAAMNVASSAAELTSFLNEAsdvsPDHPVVVSKFIQNAKEIEFDAV-ASDGHILNYAISEHVENAGVHsgdaTLVLPAQKLYVQTQKQVKRIASKIAKHLRISGPFNIQLMAREND--VKVIE 1331
                  688999***************************.999*********************999988899**************88666.679************98877522215666666788899************************9999444..55555 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.7e-05     0.025      24     173 ..     603     753 ..     584     754 .. 0.78
   2 !   27.0   0.0   2.5e-09   2.2e-06       4     169 ..    1174    1330 ..    1171    1334 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.7e-05
                 H..HHHHH----EEEEE---------EEESSGGGHHHHHHHHHTT-.....SSEEEEE--.---EEEE--EE---EE------EE---SSS-HHHHH..C-TT-EE-SS----HHHHHHHHHHHHHHHHHTT-----EEEEE-.-.----EEEEEES CS
   PF07478.8  24 klekvveklgypvfvKpareGSSvGiskveseeeleeaieeafqyd.....ekvlveeai.egreievavlgneklevsevgeivlkkgfydyeekyelidssaeievpakleeeveekikelakkaykalglkGlaRvDffl.teegeivlnEvNt 173
                 +  +  +k+gypv+v++a     +G    e+e+el+e  ++a+++       ++l+++ +   +e+e  v+ + + +   ++ +   ++ +d       +++s+ +     l++ ++ k++++a+k+ + lg+ G + +   l  +++   + EvN 
  MMETSP0890-20130614|5732_1 603 QALEAARKIGYPVLVRAAFTLGGLGSGFAENEDELQELATSALSHAggndgAQILIDKDLrGWKEVEYEVVRDVRDN---CITVCNMEN-FDPLGVH--TGDSIVVAPSQTLTNREYFKLRATALKVVRHLGIIGECNIQYALnPKSEDACIIEVNA 753
                 35677889**********99999999999******999999888753333379*******5669*******944433...333333333.4444434..5688888888899999*************************99966778899999995 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 2.5e-09
                  H-------EEEE-TT--S--H..HHHHH----EEEEE---------EEESSGGGHHHHHHHHHTT..-SSEEEEE--.---EEEE.--EE---EE------EE---SSS-HHHHH..C-TT-EE-SS--.--HHHHHHHHHHHHHHHHHTT-----EEEEE--.----EEE CS
   PF07478.8    4 aaglpvapfivlekeeakkeklekvveklgypvfvKpareGSSvGiskveseeeleeaieeafqy..dekvlveeai.egreiev.avlgneklevsevgeivlkkgfydyeekyelidssaeievpak.leeeveekikelakkaykalglkGlaRvDfflteegeivln 169 
                  ++g+ ++p+  l++ +       ++ e++gypv+v+p+   S   ++  +s+ el+++++ea     d+ v+v ++i +++eie  av  +++    ++ e+v + g+            +a++++pa+ l  + ++++k +a k+ k l ++G   + ++  e++  v  
  MMETSP0890-20130614|5732_1 1174 EIGVDQPPWRELQSTADA----ISFAERVGYPVLVRPSFVLSGAAMNVASSAAELTSFLNEASDVspDHPVVVSKFIqNAKEIEFdAVASDGHILNYAISEHVENAGVH---------SGDATLVLPAQkLYVQTQKQVKRIASKIAKHLRISGPFNIQLMARENDVKV-I 1330
                  566666666666654433....35799***********************************76533899*******99*****8344444555555555555555543.........356677778753788999*******************99999998666544.3 PP

>> PF02142.17  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.9   6.3e+03      33      69 ..    1299    1335 ..    1290    1341 .. 0.71
   2 !   34.4   0.0   1.5e-11   1.4e-08       4      94 ..    1452    1558 ..    1449    1559 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 6.9
                  -EEECCCCC---B-B..BHHHHHHHHHT-SEEEEE-- CS
  PF02142.17   33 vtevvektgegerlggrvsildlikegeidlvintly 69  
                  v++++ k+ ++ r  g  +i+ + +e++++++ ++l 
  MMETSP0890-20130614|5732_1 1299 VKRIASKIAKHLRISGPFNIQLMARENDVKVIECNLR 1335
                  5566666666667777778999999999998877765 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 1.5e-11
                  HHHHHH.HH-GSEEEEEHHHHHHHHHTT---EEECCCCC---B-B..B...........HHHHHHHHHT-SEEEEE--SCHHHHH........HHHHHHHHHHHTT-EEE CS
  PF02142.17    4 elakkl.kelgfellATggTaklLkeagipvtevvektgegerlggrv...........sildlikegeidlvintlypfkatva.......kdgykirraaenidiplp 94  
                  elakk  ++lgf+++A+ gTak+L   gip  +v+ ++++  + +                 +++++g+i +vin++++ k           ++gy +rraa++++++l+
  MMETSP0890-20130614|5732_1 1452 ELAKKIaVDLGFHIVASPGTAKALISLGIP--NVQSILSST-QEETALssprarpawadATIAQLEQGNIAFVINIPSSAKLSSFcddqesvTNGYLVRRAAIDFGVGLI 1558
                  5666664799********************..555555555.3332235678*******99*****************998776677888999***************97 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.5e-08   1.4e-05      85     217 .]     281     396 ..     277     396 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHHH.HHHHH------BB------HHHHHHH------EEE.............EEEEEEE--ET-STTTTS-HHHS--EEEEEEEE-BH..HHHH-EEEEEEE.----EEEEEEE--S-B----S-TT CS
   PF07722.8  85 eeldperdafela.LiraalergvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavslekgsllarllgaeeievnslHhqaike..lakglevlAtae.dgvieaieseeakyfvlgvQWHPE 217
                 ++ dp+r + ++  L +  +++++P++giC+G qll +a g + y+  +    +          ++  v+l+  ++          ++ ++H +ai++  l  +++ l +++ d   e i +++  +++++vQ+HPE
  MMETSP0890-20130614|5732_1 281 GPGDPARCEATIQtLKKLITQQDIPIFGICLGHQLLALAAGAKSYKMKYG---NRG-------MNQPCVDLRTTRC---------YMTSQNHGYAIDDttLPCEWRPLFVNAnDHSNEGIIHTS--KPFFSVQFHPE 396
                 56677887777761455567899******************999987773...222.......2233344444433.........345677999998877888888888877788888888888..36889999998 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00067      0.61     117     159 ..     713     756 ..     602     758 .. 0.76
   2 !   12.9   0.0   7.4e-05     0.068       2     157 ..    1163    1335 ..    1162    1339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00067
   PF02655.9 117 keelvelaeevvealegllGyvGvDlvlkd..eepyviEvNPRlt 159
                   +l+++a +vv++l g+ G + +   l+   e+ ++iEvN+Rl 
  MMETSP0890-20130614|5732_1 713 YFKLRATALKVVRHL-GIIGECNIQYALNPksEDACIIEVNARLS 756
                 33677889999****.*********999877799*********95 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 7.4e-05
   PF02655.9    2 sdKlktykaLkeagvkvP.......skleaeeleeeekklvvKprdGaGgesvrvvenkeeaeealeele........vvqefie.GeplSvsvlsdgekvlllavnrqlieleekkfvyaGnlt......pietelkeelvelaeevvealegllGyvGvDlvlkdeepyviEvNPR 157 
                  +d  k+   L+e gv  P       +   ++ +e++ +++ v p +   g ++ v++   e +++l+e +        vv++fi+  +++  + +++  ++l  a+++ + +      v +G  t      +  ++ ++++ ++a+++ ++l  + G + + l+ ++++  viE N R
  MMETSP0890-20130614|5732_1 1163 EDRHKFSAMLDEIGVDQPpwrelqsTADAISFAERVGYPVLVRPSFVLSGAAMNVASSAAELTSFLNEASdvspdhpvVVSKFIQnAKEIEFDAVASDGHILNYAISEHVENA----GVHSGDATlvlpaqKLYVQTQKQVKRIASKIAKHL-RISGPFNIQLMARENDVKVIECNLR 1335
                  6888888999999999998866643333334456669******************************9999*************73689999***999888888888877766....55555544222111445566999************.***********************88 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00014      0.12       8     102 ..     583     676 ..     577     722 .. 0.86
   2 !    9.0   0.0   0.00092      0.84       8     188 ..    1170    1335 ..    1165    1338 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
                 HHHHHTT--B--EEEESSHHHHHHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS-----TTSSEEEEE----.-EEEEEEEE-- CS
  PF01071.14   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsvlalvdg 102
                 + lk+++ + ae  + +++++a e+ ++ + ++  v+a    +g g   a++e+e  + +++ l+ ++ G+ g++++i++ l+G +Ev   ++ d 
  MMETSP0890-20130614|5732_1 583 NTLKQINERLAESYSANSVDQALEAARKIGYPV-LVRAAFTLGGLGSGFAENEDELQELATSALS-HAGGNDGAQILIDKDLRGwKEVEYEVVRDV 676
                 5578888999999999*****************.899999999*********************6.99****************668877777664 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00092
                  HHHHHTT--B--EEEESSHHHHHHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS-----TTSSEEEEE---.--EEEEEEEE----EEE---BB---ECE---E-EE------EES-TTS-HHHHHHHHHHTHHHHHHHHCC--------EEE-EE------BBS--BS- CS
  PF01071.14    8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelle.GeEvsvlalvdgktvkplpaaqdhkrvlegDegpnTGGmGayspapvvteellekikeeileptveglkkegikfkGvLyaglmlteegpkvlefnvR 188 
                  ++l+++g+  + +++++++++a ++ e+++ ++  v+++ + +g  + va+s +e ++ ++e  +     +  ++vv+ ++++  +E+ + a+    ++ + +++           g+  G    + pa  +  ++++++k  i ++++++l+       G    +lm  e+  kv+e n R
  MMETSP0890-20130614|5732_1 1170 AMLDEIGVDQPPWRELQSTADAISFAERVGYPV-LVRPSFVLSGAAMNVASSAAELTSFLNEASD----VSPDHPVVVSKFIQnAKEIEFDAVASDGHILNYAISEHVE-----NAGVHSGDATLVLPAQKLYVQTQKQVKR-IASKIAKHLRIS-----GPFNIQLMARENDVKVIECNLR 1335
                  57899****************************.99**************999998777777664....56899******997368******99999999888775433.....3566666666666766665555555544.666666666554.....7777899999999999999998 PP

>> PF13549.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0061       5.6      20      52 ..     586     618 ..     578     621 .. 0.84
   2 ?    5.8   0.0    0.0069       6.3      13      51 ..    1166    1204 ..    1160    1207 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0061
   PF13549.1  20 eaygipvvptrlassaeeaveaaeeigypvvlK 52 
                 ++++ +++++  a+s+++a eaa++igypv ++
  MMETSP0890-20130614|5732_1 586 KQINERLAESYSANSVDQALEAARKIGYPVLVR 618
                 555666788899******************887 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0069
   PF13549.1   13 aeakelleaygipvvptrlassaeeaveaaeeigypvvl 51  
                  ++  + l+ +g++ +p r  +s+++a++ ae++gypv +
  MMETSP0890-20130614|5732_1 1166 HKFSAMLDEIGVDQPPWRELQSTADAISFAERVGYPVLV 1204
                  667789******************************977 PP

>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00027      0.24      26      95 ..     263     327 ..     255     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00027
                 TSEEGGG--GGGESEEEE----HHHHHHCT-.HHHHHHHHHHHH----EEEE----HHHHHHC-TT--EE CS
  PF01965.19  26 adktledvnaddydalvlPGGhaaaedlradaeklvelvkefaaagkpiaaiChgpalLaaagllkgkrv 95 
                   ++++++++  yd+++   G + +++     + +++l k + +++ pi+ iC g +lLa a+  k++++
  MMETSP0890-20130614|5732_1 263 LETNIDNIPP--YDGIFCSNGPGDPARCE---ATIQTLKKLITQQDIPIFGICLGHQLLALAAGAKSYKM 327
                 5789999999..*********88666666...5677777777888***************9999998876 PP

>> PF02789.12  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.028        26      44      94 ..     429     479 ..     420     495 .. 0.87
   2 ?    3.4   0.0     0.062        56      57      95 ..     623     661 ..     586     676 .. 0.88
   3 ?   -3.3   0.1       7.2   6.6e+03      71      95 ..     972     996 ..     968    1010 .. 0.74
   4 ?   -0.2   0.0       0.8   7.3e+02      52      95 ..    1049    1092 ..    1043    1104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.028
  PF02789.12  44 lpslggekakrvllvGLGkeeeltaealrkaagaaaralkklkvatvavel 94 
                 ++ ++  + krvll+G G  +  +a  +  ++ +a++alk+++ + +++  
  MMETSP0890-20130614|5732_1 429 IYRTDRASLKRVLLLGSGGLSIGQAGEFDYSGSQAIKALKEEGLQVILINP 479
                 567777789********************************9998888765 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.062
  PF02789.12  57 lvGLGkeeeltaealrkaagaaaralkklkvatvavelp 95 
                 l GLG+  +++++ l+++a +a+++++++  a+++++ +
  MMETSP0890-20130614|5732_1 623 LGGLGSGFAENEDELQELATSALSHAGGNDGAQILIDKD 661
                 5599**99********************99999998765 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 7.2
  PF02789.12  71 lrkaagaaaralkklkvatvavelp 95 
                 +  ++  a+r+lk+++++++ ++  
  MMETSP0890-20130614|5732_1 972 IEALGYDAMRKLKQAGFSDAQIASY 996
                 6667778899999999988887765 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.8
  PF02789.12   52 akrvllvGLGkeeeltaealrkaagaaaralkklkvatvavelp 95  
                  +++v+++G+G  +  ++  +  +a + +r++++ +   ++v + 
  MMETSP0890-20130614|5732_1 1049 ERAVIVLGCGAYCIGSSVEFDWSAVSCVRQCRASGYRAIVVNCN 1092
                  799********999999999999999999988877777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1601 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 2.25u 0.43s 00:00:02.68 Elapsed: 00:00:01.15
# Mc/sec: 3307.39
//
Query:       MMETSP0890-20130614|5734_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-46  156.2   3.5    2.7e-46  156.0   2.4    1.0  1  PF01776.12 Ribosomal L22e protein family
    0.00078   18.7   0.0    0.00084   18.6   0.0    1.3  1  PF02639.9  Uncharacterized BCR, YaiI/YqxD family COG1671


Domain annotation for each model (and alignments):
>> PF01776.12  Ribosomal L22e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   2.4     4e-50   2.7e-46       2     110 ..      11     119 ..      10     120 .] 0.98

  Alignments for each domain:
  == domain 1    score: 156.0 bits;  conditional E-value: 4e-50
  PF01776.12   2 kkvalkfvidcskpvedkildvaafekflkerikvegktgnlgekvsierekekievtaevkfskrYlkyLtKkyLkknnlrdwlrvvasskdsyelryfqineeedee 110
                 kk+++kfvidc +pved++ldv++fekfl e ikv++ktgnlg+++s+  ek+k+ vta++++skrYlkyLtKk+Lkk++lrd+l+v+a++k++ye+ryf+in+e de+
  MMETSP0890-20130614|5734_1  11 KKKQQKFVIDCWQPVEDSVLDVSTFEKFLTESIKVDKKTGNLGDSISVATEKTKVIVTADIPLSKRYLKYLTKKFLKKQQLRDYLHVIATNKQTYEMRYFSINSEGDED 119
                 7999**************************************************************************************************9998887 PP

>> PF02639.9  Uncharacterized BCR, YaiI/YqxD family COG1671
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-07   0.00084      26      68 ..      37      79 ..       7     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.2e-07
   PF02639.9 26 splvetvvVsagaDaaDdaIveraeagdlvvTqDipLAarvle 68
                + l+e++ V+++     d I   +e++ ++vT+DipL +r l+
  MMETSP0890-20130614|5734_1 37 KFLTESIKVDKKTGNLGDSISVATEKTKVIVTADIPLSKRYLK 79
                58999**********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 442.40
//
Query:       MMETSP0890-20130614|5739_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 306.59
//
Query:       MMETSP0890-20130614|5741_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-16   60.0   0.5    2.9e-16   59.3   0.3    1.3  1  PF00505.14 HMG (high mobility group) box
    2.8e-08   33.9   0.1    4.8e-08   33.2   0.1    1.4  1  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.025   14.0   0.0    1.4  1  PF00993.15 Class II histocompatibility antigen, alpha domain


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.3   6.5e-20   2.9e-16       3      63 ..      26      86 ..      24      91 .. 0.93

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 6.5e-20
                -S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHH CS
  PF00505.14  3 RplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyek 63
                R  +a+++fs  qr  +++++P+l+  +isk++g++W+++++++K++Ye+ a+ke ++ ++
  MMETSP0890-20130614|5741_1 26 RFINAYIMFSTSQRSIIAQQHPNLNTVQISKIMGDQWRSMTDHDKQHYEDLAKKENAKRQA 86
                6679***************************************************998665 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1     1e-11   4.8e-08       6      69 ..      26      87 ..      19      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1e-11
   PF09011.5  6 rkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69
                r  nAY +F    r   +++ p+   +   +sk ++ +W+++++++K+ Ye+ Ak+  ++ ++e
  MMETSP0890-20130614|5741_1 26 RFINAYIMFSTSQRSIIAQQHPNL--NTVQISKIMGDQWRSMTDHDKQHYEDLAKKENAKRQAE 87
                447********99**9****9999..6999*************************998887776 PP

>> PF00993.15  Class II histocompatibility antigen, alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.5e-06     0.025      22      62 ..      65     107 ..      50     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.5e-06
                 EETTEEEEEEETTTTEEEESSTT-----B--...-----HHHH CS
  PF00993.15  22 efDgdelfyvDlekketVwrlPeFadlasfdg..yqgalania 62 
                 + D d + y Dl kke  +r+ eFa   + ++     alan +
  MMETSP0890-20130614|5741_1  65 MTDHDKQHYEDLAKKENAKRQAEFASKQQKQQepSSTALANKN 107
                 6799********************9765555447777888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       987  (0.0721913); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 862.69
//
Query:       MMETSP0890-20130614|5736_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-69  234.9   1.2    3.4e-29  101.6   0.0    3.4  3  PF04710.9 Pellino
     0.0012   18.3   1.7       0.29   10.6   0.1    2.7  2  PF13920.1 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.018   14.5   0.0        1.9    8.0   0.0    3.0  2  PF13445.1 RING-type zinc-finger, LisH dimerisation motif
        0.3   10.7   6.8       0.58    9.8   0.1    3.2  2  PF13639.1 Ring finger domain
       0.44   10.3   9.2       0.16   11.7   0.1    3.3  3  PF13923.1 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF04710.9  Pellino
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.2e-32   3.4e-29      14     177 ..     306     486 ..     293     493 .. 0.80
   2 !   36.8   0.0   5.6e-13   1.5e-09     176     263 ..     537     614 ..     513     622 .. 0.86
   3 !   92.6   0.4   6.4e-30   1.7e-26     267     412 ..     653     799 ..     636     802 .. 0.82

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 1.2e-32
   PF04710.9  14 kyGelivlGynGslpngdr....grrksrfalrrrekanGvkkstvhivetpsaska..v...kskeqhsisytl............srnksvvveyahdsdtdmfqiGrsteepidfvvidtvpgsqdkkeakskqstisrfaCrivvdreepytariyaaGfdsskniflgekaakWkksdge 177
                  yG+l+vlGy  +  +g +    g r+ +f lrrr++anG+++s  ++++ +  +++  +   ++++ hs++ ++            +++k v vey  d  +dmfq+Gr    + dfvv     g  + +   +    +sr+aCri + r +p+++++yaaGf+ +++ifl+e a+kW+ +  e
  MMETSP0890-20130614|5736_1 306 VYGQLVVLGYKEYRVEGSTwhpvGPRNEKFELRRRKRANGIRRSRAYVLQDSDITEKknLtkrSTEASHSVTMNVaaskepdtgritQSSKRVTVEYIPDAREDMFQLGRMIVPQNDFVVR----GPLHLDSGGVLCGPVSRYACRITCSRLPPFHCKLYAAGFNNERDIFLSEMAPKWQLKPDE 486
                 6***********9999986555589***********************97765544311311134568999886522222222222245688***************************96....556778899999******************************************976554 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 5.6e-13
   PF04710.9 176 geidGlttnGvlvlhPkkgftedskpgvWreisvcGdvyelresrsaqakGklveeesnvlqdGtlidlcgatllWrtaeglersPtk 263
                  + d ltt Gv + +P+         g Wre+sv G v+e+r+   a++ G++ ++e+  l dGt+idl+g  ll+ +a+++++  t+
  MMETSP0890-20130614|5736_1 537 CQWDALTTFGVRIWKPEI--------GAWREVSVHGGVHEPRQ--RADVAGARYPDENSTLTDGTIIDLAGIQLLFESADSMRNHDTV 614
                 46899********99975........68**************7..5899*******************************99887665 PP

  == domain 3    score: 92.6 bits;  conditional E-value: 6.4e-30
   PF04710.9 267 ealldelnaarPqcPvglntlai..PkkkrakkeeekqpyvylqcGhvkGrhewgvqeeeesrerecPlcrsvgeyvplslGaepafyvdsGapthafvPcGhvasektakywaqiplPhG...taafeaacPfcatelege.....rgyvklifq 412
                 ++++ + na+rPqcPv l t+ +   ++kr+  ++++ py++ +cGhv+ +         e r   cPlcr+ g+ v+l l  epa++ +   p+ af+PcGh+ se+ a+ w++++lP+    +a++ ++cPfca++l+++     ++y k+ fq
  MMETSP0890-20130614|5736_1 653 DRIVARFNARRPQCPVQLHTIRLeyDEEKRKALSKDRTPYIFPACGHVHAYAP-------ELRGAPCPLCRTRGPFVELKLEWEPAICDE--EPEVAFNPCGHIISERVARKWSNLALPDNappNARYRPICPFCAKPLKTDarhsdQPYNKILFQ 799
                 6788999*************7761156677888999************98853.......345678********************6644..699************************97333589************97522222567777776 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0028       7.8      16      45 ..     693     717 ..     682     719 .. 0.77
   2 !   10.6   0.1   0.00011      0.29       8      47 ..     733     782 ..     731     784 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0028
   PF13920.1  16 lllpCgHlclCeeCaerllkrkkkCpiCrs 45 
                 ++  CgH+   ++ a +l  r + Cp+Cr+
  MMETSP0890-20130614|5736_1 693 IFPACGHV---HAYAPEL--RGAPCPLCRT 717
                 45559999...8888888..89*******7 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00011
   PF13920.1   8 ClereadvlllpCgHlclCeeCaerllk............rkkkCpiCrspi 47 
                 C  +e +v++ pCgH+ + e  a+++ +             +  Cp+C +p 
  MMETSP0890-20130614|5736_1 733 CD-EEPEVAFNPCGHI-ISERVARKWSNlalpdnappnarYRPICPFCAKPL 782
                 54.566899*******.9999999997799*******9999999****9986 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.028        75      21      34 ..     686     700 ..     680     702 .. 0.83
   2 ?    8.0   0.0    0.0007       1.9      29      45 ..     742     758 ..     731     777 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.028
                 S....EEEES.---E CS
   PF13445.1  21 teqnpPvvLp.CGhv 34 
                 +++  P+++p CGhv
  MMETSP0890-20130614|5736_1 686 SKDRTPYIFPaCGHV 700
                 55677*********9 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0007
                 ES---EEEHHHHHHHHH CS
   PF13445.1  29 LpCGhvisrealeklak 45 
                  pCGh+is+    k+++
  MMETSP0890-20130614|5736_1 742 NPCGHIISERVARKWSN 758
                 46********9999998 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.8      0.11     3e+02      39      45 ..     711     717 ..     682     718 .. 0.71
   2 ?    9.8   0.1   0.00021      0.58       4      46 .]     731     781 ..     729     781 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.11
   PF13639.1  39 sCPlCrk 45 
                  CPlCr+
  MMETSP0890-20130614|5736_1 711 PCPLCRT 717
                 6999997 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00021
   PF13639.1   4 aiCldelsegeevvrlpCgHvfHeeCldewl............rssnsCPlCrkp 46 
                 aiC +e     ev   pCgH++ e+  ++w             r ++ CP C kp
  MMETSP0890-20130614|5736_1 731 AICDEEP----EVAFNPCGHIISERVARKWSnlalpdnappnaRYRPICPFCAKP 781
                 5666666....789999*************75555655555445567*****875 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.1   1.1e+04      36      43 ..     662     668 ..     657     668 .. 0.71
   2 ?    1.7   1.2     0.073     2e+02      13      45 ..     689     716 ..     678     717 .. 0.59
   3 ?   11.7   0.1   5.8e-05      0.16       7      44 ..     732     778 ..     731     780 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.1
   PF13923.1  36 kskkkCPi 43 
                 + +++CP+
  MMETSP0890-20130614|5736_1 662 R-RPQCPV 668
                 4.789996 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.073
   PF13923.1  13 enpviltpCgHl.yCkkCieqwlekskkkCPiCr 45 
                 + p i+  CgH+    + +     +  + CP+Cr
  MMETSP0890-20130614|5736_1 689 RTPYIFPACGHVhAYAPEL-----R-GAPCPLCR 716
                 4577888888872222221.....1.45566666 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 5.8e-05
   PF13923.1   7 iCleelenpviltpCgHlyCkkCieqwleks...........kkkCPiC 44 
                 iC ee+e +  + pCgH + ++ + +w + +           ++ CP+C
  MMETSP0890-20130614|5736_1 732 ICDEEPEVA--FNPCGHIISERVARKWSNLAlpdnappnaryRPICPFC 778
                 899998865..79**************999999999998888888**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       864  (0.0631949); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.24u 0.40s 00:00:01.64 Elapsed: 00:00:00.79
# Mc/sec: 2541.96
//
Query:       MMETSP0890-20130614|5744_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.46   10.2   3.8       0.47   10.1   0.4    2.1  2  PF07800.7  Protein of unknown function (DUF1644)
        3.7    7.1  37.7       0.25   10.9   8.0    3.4  2  PF07926.7  TPR/MLP1/MLP2-like protein
        5.1    6.6  10.9        4.1    6.9   2.0    2.5  2  PF09769.4  Apolipoprotein O


Domain annotation for each model (and alignments):
>> PF07800.7  Protein of unknown function (DUF1644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4    0.0001      0.47      60     150 ..      67     157 ..      26     168 .. 0.73
   2 ?    0.8   0.1     0.075   3.4e+02      91     134 ..     251     294 ..     191     310 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
   PF07800.7  60 eeeasrdaseeeesekeelaelaCPlCrGevkgwkvvee.areflnekkrsCseekCsfsGnykeLrkhvrkehpsarPsevdparerkWer 150
                 + +a+++ +++e++ek++  + + P  + +v+  +  ++ +++ l+ekkr+ +eekC+   + + Lr+ +  + ++++ +  d +re +  +
  MMETSP0890-20130614|5744_1  67 NGNADTNRESTEDTEKQNPLSTNVPRHQSSVTSDIDAQKdTQKILEEKKRA-EEEKCALEAETARLREELADSRRKVKDAASDLERELAMAE 157
                 334566677777888888888999999999987666555378889999986.89****************9999999999988888766554 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.075
   PF07800.7  91 kgwkvveeareflnekkrsCseekCsfsGnykeLrkhvrkehps 134
                      v+ea +  ++ +r  s ek s + + +e+++h+ ++ ++
  MMETSP0890-20130614|5744_1 251 ALELAVKEAEQKCQSAERELSAEKISSAAKIREFEQHIMQQDEE 294
                 44456788888888888888888888888888888888776654 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   8.0   5.5e-05      0.25       2      76 ..     104     178 ..     103     186 .. 0.88
   2 ?   -0.1  11.8      0.14   6.2e+02      52     118 ..     219     285 ..     191     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.5e-05
   PF07926.7   2 eaeisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeas 76 
                 ++  +++ ee+kr+e+++ a e++   l+++l + +++++ a ++ erel    +  +e +++k++++ l +e  
  MMETSP0890-20130614|5744_1 104 QKDTQKILEEKKRAEEEKCALEAETARLREELADSRRKVKDAASDLERELAMAEAELNEARSTKASANALVEESR 178
                 56678999******************************************9999988888888888888777654 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.14
   PF07926.7  52 ikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkieeln 118
                 +++a+  + L+ ++++l++  + +++ r++a + +  ++e+e+k ++ +++L  e+ ++  ki e +
  MMETSP0890-20130614|5744_1 219 QEKARLEEGLSLVRQQLESQTTLLAKEREKALALELAVKEAEQKCQSAERELSAEKISSAAKIREFE 285
                 556777888999***************************************************9976 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.0   0.00089       4.1       4      71 ..      83     152 ..      77     178 .. 0.72
   2 ?    3.6   1.4    0.0097        44      34      76 ..     212     267 ..     158     307 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00089
   PF09769.4   4 ddedskpvppeelpiytk...peeeakllgenslysvrptdrLeaqirsaRlfleeklsavedavntvksr 71 
                 +++ s++vp  ++++++    ++ ++k+l+e++ + +++  +Lea+ +++R+ l++  + v+da ++ +  
  MMETSP0890-20130614|5744_1  83 QNPLSTNVPRHQSSVTSDidaQKDTQKILEEKK-RAEEEKCALEAETARLREELADSRRKVKDAASDLERE 152
                 556667788888888888776666666666666.8888888899999999999888888888877665544 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0097
   PF09769.4  34 l...ysvrptdrLeaqirsaRlfleeklsaved..........avntvksrvldte 76 
                 +   +  ++  rLe++ + +R++le++++ + +          av++++++ ++ e
  MMETSP0890-20130614|5744_1 212 AlmnAAAQEKARLEEGLSLVRQQLESQTTLLAKerekalalelAVKEAEQKCQSAE 267
                 13445566677888888888888888888777755555555554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1498  (0.109567); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:01.37
# Mc/sec: 631.45
//
Query:       MMETSP0890-20130614|5751_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-06   26.1   0.9    2.1e-05   24.5   0.6    1.9  1  PF00505.14 HMG (high mobility group) box
  ------ inclusion threshold ------
       0.02   14.4   7.7      0.028   13.9   5.4    1.1  1  PF07763.8  FEZ-like protein
       0.96    9.4   4.0       0.37   10.7   0.4    2.1  2  PF04900.7  Fcf1
        1.3    8.7   0.0        1.3    8.7   0.0    2.6  2  PF07283.6  Conjugal transfer protein TrbH
        5.7    5.5  21.6        7.5    5.1  15.0    1.1  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.6   7.7e-09   2.1e-05       1      68 [.     101     169 ..     101     170 .] 0.93

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 7.7e-09
                 ---S--HHHHHHHHHHHHHHHHST.TS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
  PF00505.14   1 pkRplsaFflfskeqraklkaenP.dlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                 pk+p+ a   f++ + ++l+++ P + + + ++ +l e++++ + +++ +  + ae++k++yeke ++Y
  MMETSP0890-20130614|5751_1 101 PKKPRDALRCFMRRNVRELRKKYPpGTTETKLKHILKEMFQQAPSDVQTQMSRLAEQDKARYEKELADY 169
                 89*************9999999862566***************************************99 PP

>> PF07763.8  FEZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.4     1e-05     0.028      76     210 ..      19     166 ..       5     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1e-05
   PF07763.8  76 kedaktedsel...desddeelreqldmhslivsglneePlktadqvieEieemmqespdpeeeeeeseseslsklseelralkksssns..lyeeklrel........svseLnelleevEvlireysEeLvqeLAlRdELefEKEv 210
                  +++  +++++   +++++ +l++q d++ l+++  n       + v+ E+e + +  + +   ++  + e l+++s+ l+ +kk        +  ++rel        + ++L+++l+e+ ++  +   + ++ LA  d   +EKE+
  MMETSP0890-20130614|5751_1  19 FQQQPPQQQQFaqqQQQQQFALQQQQDVERLLLQDENLALKAISNAVVAEVERLKDANQAQLTAQTAKHAEELKSISKRLHEPKKPRDALrcFMRRNVRELrkkyppgtTETKLKHILKEMFQQAPSDVQTQMSRLAEQDKARYEKEL 166
                 44444445555333555666899*********95555444456789*************************************87654334445555555533334443789************999999*****************8 PP

>> PF04900.7  Fcf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.51   1.4e+03      27      38 ..      23      34 ..       3      54 .. 0.55
   2 ?   10.7   0.4   0.00014      0.37      11      79 ..      60     135 ..      50     145 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.51
   PF04900.7 27 fkgalkiakakr 38
                 ++++++a++++
  MMETSP0890-20130614|5751_1 23 PPQQQQFAQQQQ 34
                333333343333 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
   PF04900.7  11 mitqcvlaeleklgkefkgalkiakakrlerlkckhkee.....elsadecilelva.khnk.yiVATqDkeLrkk 79 
                  i++ v+ae+e+l+   + +l+  +ak+ e lk   k       +++a +c++++   + +k y   T   +L++ 
  MMETSP0890-20130614|5751_1  60 AISNAVVAEVERLKDANQAQLTAQTAKHAEELKSISKRLhepkkPRDALRCFMRRNVrELRKkYPPGTTETKLKHI 135
                 68999*********99999888888877777665444334434778888888776532222237666666666665 PP

>> PF07283.6  Conjugal transfer protein TrbH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   7.1      0.67   1.8e+03       4      37 ..       6      38 ..       3      95 .. 0.90
   2 ?    8.7   0.0   0.00047       1.3      12      40 ..     115     143 ..     109     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.67
   PF07283.6  4 aaqalaedavkqLaklypPaktrleLkqktadaf 37
                ++q+l ++  +qL ++ pP + ++  +q++  +f
  MMETSP0890-20130614|5751_1  6 QQQQLQQQQQQQLFQQQPPQQQQFAQQQQQ-QQF 38
                7999********************985554.444 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00047
   PF07283.6  12 avkqLaklypPaktrleLkqktadafgaa 40 
                  v++L k+ypP++t  +Lk+  ++ f +a
  MMETSP0890-20130614|5751_1 115 NVRELRKKYPPGTTETKLKHILKEMFQQA 143
                 5899**************99988888765 PP

>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  15.0    0.0027       7.5     292     377 ..       7      97 ..       2     108 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0027
   PF04684.8 292 qvqlqhqhqhq..qqr..dvqhqhqqqsqdqhqeqhqshvdsdnnvyqd...rigsisdqdeaavhnlddtnvrvaaaaaaaaaaalqsresh 377
                 q+qlq+q+q+q  qq+  ++q+  qqq+q+q   q+q+ v+  + + qd    +++is+   a v  l d+n    +a +a  a  l+s  + 
  MMETSP0890-20130614|5751_1   7 QQQLQQQQQQQlfQQQppQQQQFAQQQQQQQFALQQQQDVE--RLLLQDenlALKAISNAVVAEVERLKDANQAQLTAQTAKHAEELKSISKR 97 
                 44444444444434441133333455555566666666665..5556652234789999999********99988899999999999886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2305  (0.168593); expected 273.4 (0.02)
Passed bias filter:                      636  (0.0465184); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.43s 00:00:01.25 Elapsed: 00:00:00.86
# Mc/sec: 473.70
//
Query:       MMETSP0890-20130614|5748_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-26   92.3   2.8    1.3e-13   50.9   0.5    2.7  2  PF07603.6  Protein of unknown function (DUF1566)
      0.009   14.2   0.0      0.018   13.2   0.0    1.4  1  PF02480.11 Alphaherpesvirus glycoprotein E
  ------ inclusion threshold ------
       0.13   11.9   0.4       0.25   11.0   0.2    1.4  1  PF12575.3  Protein of unknown function (DUF3753)


Domain annotation for each model (and alignments):
>> PF07603.6  Protein of unknown function (DUF1566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   4.7e-14   2.1e-10       1      67 [.      64     113 ..      64     114 .. 0.93
   2 !   50.9   0.5   2.9e-17   1.3e-13       1      68 []     221     272 ..     221     272 .. 0.95

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 4.7e-14
   PF07603.6   1 VtDnatgLiWercsegqtwnggsdgcsgatslnwqdalayvnqlnanglagktdWRLPtikELesLv 67 
                 VtD +tgL+We+  ++               + +++a +y+n++   +++g++dWRLPti+EL sL+
  MMETSP0890-20130614|5748_1  64 VTDLNTGLMWEQGFSEA--------------MYYREATRYANAA---TTGGYDDWRLPTITELYSLI 113
                 89*********999843..............7899*********...*******************8 PP

  == domain 2    score: 50.9 bits;  conditional E-value: 2.9e-17
   PF07603.6   1 VtDnatgLiWercsegqtwnggsdgcsgatslnwqdalayvnqlnanglagktdWRLPtikELesLvd 68 
                 + D++  L+W++  +g t             ++wq+al+y+++l   ++ag +dWRLP+ kEL+ Lvd
  MMETSP0890-20130614|5748_1 221 IYDSVWDLTWMQADDGNT-------------YDWQGALNYCENL---DFAGESDWRLPNAKELQALVD 272
                 5688999*********99.............*************...*******************97 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.9e-06     0.018     318     386 ..     573     639 ..     565     648 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.9e-06
  PF02480.11 318 Pragaaadseesdppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye 386
                 P+++ + d+++s++ +++ ++++++ +++++++  + +++v ++ +lllv ++++++c+  + ++++ye
  MMETSP0890-20130614|5748_1 573 PTLSLNVDPPTSQGAVETPTNKSKK-SNSSETNIIIIVIFV-VLGTLLLVGATSFVLCTSSKKNKQEYE 639
                 5555555555555555544444444.443444443333333.577899999***************999 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   5.5e-05      0.25      38      65 ..     592     619 ..     588     626 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.5e-05
   PF12575.3  38 kkkkensssniiiliiliiivvivvllv 65 
                 ++k+++s+s+ +++ii++i+vv+ +ll+
  MMETSP0890-20130614|5748_1 592 TNKSKKSNSSETNIIIIVIFVVLGTLLL 619
                 3444445555567888888888887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.22u 0.39s 00:00:01.61 Elapsed: 00:00:00.96
# Mc/sec: 1630.02
//
Query:       MMETSP0890-20130614|5752_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.76
# Mc/sec: 510.80
//
Query:       MMETSP0890-20130614|5749_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.026   13.6   1.0       0.15   11.1   0.5    2.3  2  PF01110.12 Ciliary neurotrophic factor


Domain annotation for each model (and alignments):
>> PF01110.12  Ciliary neurotrophic factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.054   7.4e+02      78     139 ..     142     204 ..     134     218 .. 0.76
   2 ?   11.1   0.5   1.1e-05      0.15      89     139 ..     326     373 ..     319     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.054
  PF01110.12  78 aayrafrvllarlleeqrvlltdteae.lgqalaalllqvaafvyqleelli.llerkipraee 139
                 aay a  v+ + ++++ ++ +    a+ + q ++ +l  v  fv  +e l++  l+++i ra+ 
  MMETSP0890-20130614|5749_1 142 AAYTAVDVVDSGIIKHSKESYEAMAAKcFTQRISDMLESV-PFVKSVEGLIKdALDYGIERADY 204
                 6788888888888888888888777664788888887666.69999999986367888888765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.1e-05
  PF01110.12  89 rlleeqrvlltdteaelgqalaalllqvaafvyqleellillerkipraee 139
                  +l+++   +t+t++++   l+++ lq+aa   ++ee  +l+e+ +  ae+
  MMETSP0890-20130614|5749_1 326 AMLDDEFDNFTPTQSDIVTLLSTMKLQLAA---EIEERKKLEEQIAAEAEK 373
                 5999************************99...566666666655554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1577  (0.115345); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.42s 00:00:01.36 Elapsed: 00:00:00.90
# Mc/sec: 1283.38
//
Query:       MMETSP0890-20130614|5747_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-10   39.8   0.0    2.3e-09   36.9   0.0    2.1  1  PF13679.1 Methyltransferase domain
     0.0097   15.3   0.0      0.024   14.1   0.0    1.6  2  PF13847.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.019   14.1   0.0      0.033   13.3   0.0    1.3  1  PF05206.9 Methyltransferase TRM13


Domain annotation for each model (and alignments):
>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   5.1e-13   2.3e-09       4     134 ..      78     229 ..      75     233 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 5.1e-13
   PF13679.1   4 keveklaelveklvkea..akeegsltvvDvGaGkgYLafvlasylkek..........e.yklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatp...........kesvdvviaLHaCdtltdealrlale.keakllvlvpCC 134
                 ke+ ++a ++++++  +  +++ +++t+vD+++GkgYL+  l+  l+ k          +  + +v gi+ ++++++ ++ l e +   +   l  ++++i++++               + +++a H C+tl+  a++l+ e ++a +l+l pCC
  MMETSP0890-20130614|5747_1  78 KEIGETAPILDATLCLLrgNQDLKDVTIVDLCSGKGYLSMLLSE-LAPKgnvyrcllvdKaWPRSVEGIEPQSHHIDWSH-LYEPYS--WPIPLISSKQDIKSRSAlrsfrekvldnAPGPLLILAVHLCGTLSLRAVELFNEqPNASFLALKPCC 229
                 7777888888876665555778899*****************99.66663444444444235566777777777766554.344444..44555555666665555999******98888999********************9************ PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.2e-06     0.024       3      32 ..     101     129 ..      99     136 .. 0.88
   2 ?   -3.0   0.0      0.96   4.4e+03      99     112 ..     289     302 ..     288     346 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.2e-06
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvv 32 
                 ++++++Dl++G+Gyl+  l+ el p+++v+
  MMETSP0890-20130614|5747_1 101 KDVTIVDLCSGKGYLSMLLS-ELAPKGNVY 129
                 6789****************.899999865 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.96
   PF13847.1  99 vlkpggrlivesps 112
                 +lk+ggr+ +e +s
  MMETSP0890-20130614|5747_1 289 LLKDGGRYATEQIS 302
                 68999999988888 PP

>> PF05206.9  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-06     0.033      18     119 ..     101     211 ..      88     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.2e-06
   PF05206.9  18 kstayvEfGaGkgeLsrylnqalkeekkenakvvlvdrasnrlKaDrklrkdese...........lalkRlridIkdL.nLkkvle..leekkkkvvavsKHLCGaaTDltLrcl 119
                 k+ ++v++++Gkg+Ls  l + + +   + ++ +lvd+a  r       ++++ +           ++l  ++ dIk    L+ + e  l+++  ++++++ HLCG+   l+Lr +
  MMETSP0890-20130614|5747_1 101 KDVTIVDLCSGKGYLSMLLSELAPKG--NVYRCLLVDKAWPRSVEGIEPQSHHIDwshlyepyswpIPLISSKQDIKSRsALRSFREkvLDNAPGPLLILAVHLCGT---LSLRAV 211
                 67799****************98777..99**********99865544444443366778899999999999999997515777766334488889999999***97...566554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1273.68
//
Query:       MMETSP0890-20130614|5757_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 580.53
//
Query:       MMETSP0890-20130614|5755_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-89  299.8   0.1    2.2e-89  299.3   0.0    1.1  1  PF00225.18 Kinesin motor domain


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.3   0.0   1.6e-93   2.2e-89      25     334 ..      28     368 ..       5     369 .. 0.92

  Alignments for each domain:
  == domain 1    score: 299.3 bits;  conditional E-value: 1.6e-93
                 EEEEEEECCTTTCCTEEEEEESEEEETTS-.......HHHHHHHHHHHHHHHHH-.---EEEEEE--TT---HHHHH-........TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT............................TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCT CS
  PF00225.18  25 keeekkskkenkeekekeftFdkvfdeeat.......qeevyeelakplvesvle.GynvtifaYGqtgsGKTytmeGk.......eeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaen...........................kkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakn 334
                 +++ ++s+  +++e +++f+Fd+vfd ea+       qe +ye+l+ pl+e++++ G+n+t+++YGqtgsGKTy+m G        +  + +Gi+ r+++ +F++ie+ +e+  ++++++ sy EiY+e+++DLL ++     k+l++re++++g   + +lt+v v+s +e+ +l + g++ r++a+t++n+ SSRSHaift+++++++  ++++    +++ + LvDLAGsEr+++tg+ +++rl+Ea++IN+SL +L +v++aL  n                           +k ++vpYR+S+LT+lL+ds++g+s ++++++vsp +s+++et+ tL++a+ra+ 
  MMETSP0890-20130614|5755_1  28 TQSCSSSNGMKAAEWHRDFKFDAVFDDEAEmmtaseeQEALYESLGVPLIERAFDgGFNSTLMTYGQTGSGKTYSMCGPslvfnkeNAFSLRGILWRVCDGVFDQIEKLQET--HSIKIEASYCEIYQENVRDLLMPT---G-KNLRVREHPERG-AWLPDLTTVYVSSRDELRALVAIGNEARATAATNVNTYSSRSHAIFTLNIQRQTCIQNSR---PTQACIRLVDLAGSERVAQTGT-DGDRLTEAKSINRSLATLCNVVQALIVNarqenllddfstlshrrrrstptkqnaNKLRFVPYRNSRLTWLLKDSFSGHSFVTLLACVSPVASHYDETIATLKYAQRARY 368
                 45666677778888899**********999999*********************7369************************9877555679***************98877..889*******************98...3.45********98.***************************************************988554444...46799****************5.6788**********************999************************99999*************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:01.23
# Mc/sec: 1453.40
//
Query:       MMETSP0890-20130614|5760_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.82
# Mc/sec: 865.03
//
Query:       MMETSP0890-20130614|5765_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   15.3   0.0       0.01   14.9   0.0    1.1  1  PF06912.6 Protein of unknown function (DUF1275)
  ------ inclusion threshold ------
      0.026   13.5   0.7      0.034   13.1   0.5    1.3  1  PF05477.6 Surfeit locus protein 2 (SURF2)
      0.038   13.9   0.0      0.054   13.4   0.0    1.3  1  PF02960.9 K1 glycoprotein


Domain annotation for each model (and alignments):
>> PF06912.6  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.3e-06      0.01     160     190 ..     125     159 ..     109     162 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.3e-06
   PF06912.6 160 r....nrrrlllrlllvlsfllGavvGallfkllg 190
                 +     r r l++ll++++f++G++vG+l+f + g
  MMETSP0890-20130614|5765_1 125 QgqttGRYRRLMLLLAIVLFIVGGIVGGLIFLRSG 159
                 2344567788899999**************98776 PP

>> PF05477.6  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   7.4e-06     0.034     113     173 ..       4      66 ..       2     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.4e-06
   PF05477.6 113 eecqkqgveyvPacllkkrrrkedeedgskkpkkkekeesdfWePks..sdeddadseDsmsD 173
                 ee +k++ve+v   l + +r k +  + ++   + ++ +  +W P+s  sd+d+ ds+    D
  MMETSP0890-20130614|5765_1   4 EEKRKRSVEFVKCFLDDDERTKSSPPTLDNMEAELTEGNVSMWLPRSdeSDDDGVDSSTHSVD 66 
                 677899******99999999999888888877555556899******5555555555555555 PP

>> PF02960.9  K1 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.054      73     111 ..     135     174 ..      86     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   PF02960.9  73 fmtlvalig.tmcgilgtiifahcqkqsdsnktvqqqlrd 111
                 +m l+a++   + gi+g +if +  k++ds+ ++ +  +d
  MMETSP0890-20130614|5765_1 135 LMLLLAIVLfIVGGIVGGLIFLRSGKKNDSSSSTTKTSQD 174
                 56666655415679***************98776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:01.14
# Mc/sec: 470.94
//
Query:       MMETSP0890-20130614|5768_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-19   70.0   0.0    1.9e-19   69.6   0.0    1.1  1  PF10294.4  Putative methyltransferase
    0.00018   20.6   0.0    0.00022   20.3   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    0.00098   18.4   0.0     0.0015   17.8   0.0    1.2  1  PF05175.9  Methyltransferase small domain
     0.0025   18.1   0.0     0.0053   17.0   0.0    1.6  1  PF08242.7  Methyltransferase domain
     0.0036   16.6   0.0     0.0057   15.9   0.0    1.3  1  PF03602.10 Conserved hypothetical protein 95
     0.0085   16.5   0.0      0.015   15.7   0.0    1.5  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
      0.032   14.1   0.0      0.063   13.1   0.0    1.5  1  PF13659.1  Methyltransferase domain
      0.062   13.6   0.0       0.12   12.7   0.0    1.5  1  PF08241.7  Methyltransferase domain
       0.15   11.0   0.0       0.24   10.3   0.0    1.3  1  PF02527.10 rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.3e-22   1.9e-19      17     173 ..      42     188 ..      27     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 1.3e-22
   PF10294.4  17 vgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDlee.llellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketkilvaykkr.reaekkFfkllek 173
                  g ++W+ +  l+ ++++k        +ls++s +ELG+G+Gl Gi++ ++     v+ltD +e +l ll++n++ln+   ++k +++   Wge+ + + ++   +D +l aD+v   +s+e+L++t++ +l+++  +++ +  r  ++e  Ff+++++
  MMETSP0890-20130614|5768_1  42 TGLIIWPISEYLAWFVARK-------VNLSEKSCIELGAGSGLPGIVASKK--AKYVVLTDGNElVLSLLERNLALNR--GDHKQEVRRVCWGERSSVEGFTD-YFDCVLGADVVAWPNSIEPLLQTVTAILATDGAFYCGFVVRaLSTERLFFQKAQE 188
                 5789999999988888884.......699*******************999..789*****999789*********88..88899999********9999966.69************************************99955778889998876 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.4e-07   0.00022     157     257 ..      60     169 ..      39     202 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.4e-07
   PF06325.8 157 klvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva..l..lkelpk...ekadviv.aNILa..evlieLaedikelvkeggllil 257
                 k++ ++++ + +G+GSG+  i+a+k  ak vv +D +e+ ++  ++N++lN+ ++k ev      +++ ++     +d ++ a ++a  + +  L+++++++++++g + +
  MMETSP0890-20130614|5768_1  60 KVNLSEKSCIELGAGSGLPGIVASK-KAKYVVLTDGNELVLSLLERNLALNRGDHKQEVRrvCwgERSSVEgftDYFDCVLgADVVAwpNSIEPLLQTVTAILATDGAFYC 169
                 56778899***************99.799************************9999995322222222224448899888689999555699999999999999999865 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.7e-07    0.0015      31      85 ..      64     117 ..      50     139 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 9.7e-07
                 ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--E CS
   PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vev 85 
                  +++ ++lG+G G+ g++++k+ +   v+l+D n+  +++ ++nl+ n+ ++  ev
  MMETSP0890-20130614|5768_1  64 SEKSCIELGAGSGLPGIVASKKAKY--VVLTDGNELVLSLLERNLALNRGDHkQEV 117
                 56789****************9999..*********************98865444 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.5e-06    0.0053       2      98 ..      70     166 ..      69     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.5e-06
   PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg..ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 e+G+G+G    +  +k     ++ +D ++ ++   ++ la +++++ ++v+       ++ +g  ++fD v+ ++v+ + + i+ +l+ + + L+ +G 
  MMETSP0890-20130614|5768_1  70 ELGAGSGLPGIVASKK--AKYVVLTDGNELVLSLLERNLALNRGDHKQEVRRVCWGERSSVEGftDYFDCVLGADVVAWPNSIEPLLQTVTAILATDGA 166
                 9******999999999..66666*********7777778777777777777777766655555789*****************************9996 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.8e-06    0.0057      39      97 ..      60     117 ..      53     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.8e-06
  PF03602.10  39 e.elegarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavl 97 
                 + +l ++++++l aGsG  g+ A S +ak vvl + ++ ++++l++nl+  + ++  +++
  MMETSP0890-20130614|5768_1  60 KvNLSEKSCIELGAGSGLPGIVA-SKKAKYVVLTDGNELVLSLLERNLALNRGDH-KQEV 117
                 33689999*************76.************************9877443.3333 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.7e-06     0.015       2      79 ..      65     144 ..      64     194 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9.7e-06
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller...fDavllkg.l 79 
                 +k+ ++lG+G+G+ ++++++  +   vv  D +e  l+l+++n++ ++ +++ e+++  + e++s+ +    fD+vl  + +
  MMETSP0890-20130614|5768_1  65 EKSCIELGAGSGLPGIVASK--KAKYVVLTDGNELVLSLLERNLALNRGDHKQEVRRVCWGERSSVEGFtdyFDCVLGADvV 144
                 56779***************..7777******************55666666666664443334444445568888766644 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.2e-05     0.063       3      59 ..      67     122 ..      65     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
   PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdl 59 
                 +++++g+GsG   ++a + + + ++ ++ ++  + l +rnla+++ +++ +vr+  +
  MMETSP0890-20130614|5768_1  67 SCIELGAGSGLPGIVASKKA-KYVVLTDGNELVLSLLERNLALNRGDHKQEVRRVCW 122
                 689****************9.***********************9988877766544 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.7e-05      0.12       2      95 .]      70     169 ..      69     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.7e-05
   PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle.......lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                 ++G+G+gl     +++ a+ v+ +D +e +l+  +++l+ ++ +       +  +   ++    ++fD+v+   v+ + ++ e +l+ +  +L  +G +++
  MMETSP0890-20130614|5768_1  70 ELGAGSGLPGIVASKK-AKYVVLTDGNELVLSLLERNLALNRGDhkqevrrVCWGERSSVEGFTDYFDCVLGADVVAWPNSIEPLLQTVTAILATDGAFYC 169
                 7899999999999999.999999999999888777777666555556664444444555544489********************************9986 PP

>> PF02527.10  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.24      47      66 ..      63      82 ..      52     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00016
                GGC..EEE--------HHHH CS
  PF02527.10 47 ekrskviDvGsGaGlPGipL 66
                 +++++i +G+G GlPGi+ 
  MMETSP0890-20130614|5768_1 63 LSEKSCIELGAGSGLPGIVA 82
                445469************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.49s 00:00:00.99 Elapsed: 00:00:00.87
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|5766_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-49  167.4   0.0    4.5e-49  166.9   0.0    1.2  1  PF02913.14 FAD linked oxidases, C-terminal domain
      4e-38  129.9   0.5    6.4e-38  129.2   0.4    1.3  1  PF01565.18 FAD binding domain
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.22   11.1   0.0    1.4  1  PF01981.11 Peptidyl-tRNA hydrolase PTH2
       0.12   11.7   0.0       0.24   10.8   0.0    1.4  1  PF00355.21 Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF02913.14  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.0   1.3e-52   4.5e-49       3     249 .]     250     503 ..     248     503 .. 0.95

  Alignments for each domain:
  == domain 1    score: 166.9 bits;  conditional E-value: 1.3e-52
                 TSS-SEEEEEEHHHHHHHHHGGGTHC.TSS-S-HHHHHHHHHHHCHHTEEE....TTS.TTT.EEEEE--HHHHHHHHHHHHHHHHHHHHTCB---E.EEECCCS-TCTCHHHHHHHTHHCCHCHHCTTEEEEEEEEE--HHHHHHHHHHHHHHHHHHH.........EEEEEEEE-EEEEEEEEEEEETT-HHHHHHHHHHHHHH.HHHHHH----BSS--GGGHHHHHHHTHHHHHHHHHHHHHHHHHH-TT--BSTT-- CS
  PF02913.14   3 eavavavlgfpsfeaavkavrelass.gigpaalelmdkaaldlvlatkgl....kglpdeeealllvefegddeevaeerveaavealleatgagdvvvaqdeaeqerlwkarkkalpylrdallgagalvftedvsvpvselpdlvaeikellakyg.........lvvvlfgHvgdgnlhlyilfdakdeeeeeraeelvdev.idlavalGGsisgeHGvGrdkkawlkeekgeeglalmrriKaalDPnniLNPgkv 249
                 +av+va++  +sf ++ k +++++   g++++a+e++d++al++vl++++      + +++  + +l+e++g+d e++++++ a +++++e   + d+vva d +++ +lw+ r+++        ++  ++v+++dvs+p+  l++lv+ ++++l ++g         ++v+ +gHvgd nlhl+i+      ++ +++ +l + + +  + a++Gsis+eHGvG++k++++   k++ +l++m+ +K ++DP++iLNP+kv
  MMETSP0890-20130614|5766_1 250 SAVNVALFSCSSFSSVRKILVRARVMcGEILSAVEFFDSQALNAVLKYEPDlvdpLSDDTSSSFRVLIETSGSDIEHDRAKLDAFLTHAFETELVNDGVVAPDTNKAHALWRLREGISD-----SMSNSGYVYKYDVSLPLNSLYKLVELTRRRLTDNGyqlnddtngITVAGYGHVGDSNLHLNIASHS---GQDDNLLALIEPWlFNQVQAFHGSISAEHGVGICKRDYMVDVKSKPLLDTMHGLKHLFDPHGILNPYKV 503
                 6789*************************************************665566667789*****************99***********************************.....89************************************************************9655...88888889999998999**************************************************98 PP

>> PF01565.18  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.4   1.9e-41   6.4e-38       3     139 .]      73     210 ..      71     210 .. 0.98

  Alignments for each domain:
  == domain 1    score: 129.2 bits;  conditional E-value: 1.9e-41
                 CEEEESSHHHHHHHHHHHHHHT-CEEEE-----CCSTTC.SS-EEEEEGTT---EEEEETTTTEEEEE---BHHHHHHHHHHH--B-S-GGCTCCGSB---TTTTT-----TTCG--HHGCEEEEEEEET---EEEEE CS
  PF01565.18   3 avvrpeseeevaaivrlanekglpvlvrGgGssllgqav.atggvvldlsrlnrileideesgtatveaGvtlgdleealaakglllglepgslipgtvGGaiatngggygsekyGlirdnvlslevvladGevvrls 139
                 +v+rp+s+eev+aiv+ ++  +l + ++Gg ++l+g++v  +++++l+l+r+n+i+++de+sg+++veaGv+l+ l+e+l+++g++++l+ g+  ++t+GG+ atn+gg +  +yG++r  +++levv+a+G+v++++
  MMETSP0890-20130614|5766_1  73 IVLRPKSTEEVQAIVERCQHSRLALCLQGGKTGLVGGSVpVFDEIILSLKRMNQIIDFDEDSGIVRVEAGVVLETLDEFLRERGYVAPLDLGAKGTCTLGGNAATNAGGVRYLRYGSLRGSIVGLEVVTAQGQVLDCG 210
                 799********************************999989********99************************************************************************************996 PP

>> PF01981.11  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.4e-05      0.22      35      78 ..      57      98 ..      38     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.4e-05
                HHHHHHHHHHHHH----EEEEEESSHHHHHHHHHHHHHTT---E CS
  PF01981.11 35 ekkkkellkaWlkegqkKvvlkveseeellelaekakseglpaa 78
                e+++ +++k+W+  g++K+vl+ +s+ee++ + e+ ++++l  +
  MMETSP0890-20130614|5766_1 57 EEYNLDWMKKWR--GKSKIVLRPKSTEEVQAIVERCQHSRLALC 98
                56677999***8..99******************9999888665 PP

>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.1e-05      0.24      22      56 ..      67     101 ..      51     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.1e-05
                 G.GSEEEEEE.CTCC-EEEEESB-STSS-BTTECEBC CS
  PF00355.21  22 l.gedlvvvr.dkdgeivalnniCtHrgcplsegkag 56 
                   g++ +v+r ++ +e+ a+  +C+H +  l+ +  g
  MMETSP0890-20130614|5766_1  67 WrGKSKIVLRpKSTEEVQAIVERCQHSRLALCLQ--G 101
                 44889999**9*******************9998..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.45s 00:00:01.18 Elapsed: 00:00:00.98
# Mc/sec: 1256.86
//
Query:       MMETSP0890-20130614|5772_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-08   32.8   0.5    3.6e-07   29.6   0.0    2.2  3  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0029   17.7   0.4      0.004   17.2   0.3    1.3  1  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.071   13.1   0.4       0.15   12.1   0.0    1.7  2  PF05036.8  Sporulation related domain
       0.12   12.1   0.1       0.15   11.7   0.0    1.4  1  PF12862.2  Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.8   9.6e+03       6      11 ..       9      14 ..       7      17 .. 0.63
   2 ?    1.2   0.0     0.093   3.2e+02      29      41 .]      27      39 ..      27      39 .. 0.84
   3 !   29.6   0.0     1e-10   3.6e-07       2      37 ..      42      77 .]      41      77 .] 0.95

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.8
                HHHHHC CS
  PF00514.18  6 qaviea 11
                 a+i++
  MMETSP0890-20130614|5772_1  9 SALIDS 14
                567766 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.093
                HHHHHHHHHHHHT CS
  PF00514.18 29 qeeAawALsNLaa 41
                +eeA++AL  La+
  MMETSP0890-20130614|5772_1 27 KEEAVAALKVLAR 39
                599*****88875 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 1e-10
                HHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHH CS
  PF00514.18  2 penkqavieaGavppLvqLLksgdeevqeeAawALs 37
                +++k ++ eaGa+p Lv+LL+sg    +eeAa+AL+
  MMETSP0890-20130614|5772_1 42 SDHKVTIAEAGAIPSLVNLLTSGTAVAKEEAAAALR 77
                678999****************************97 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   1.2e-06     0.004      10      55 ..      23      76 ..      12      77 .] 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.2e-06
   PF13646.1 10 kdpdpevraaaieaLg........qlgseealpaLlelLkdsdpevRraAaeaL 55
                +d+d e   aa+++L+        +++++ a+p L+ lL++  +  +++Aa aL
  MMETSP0890-20130614|5772_1 23 TDNDKEEAVAALKVLArdksdhkvTIAEAGAIPSLVNLLTSGTAVAKEEAAAAL 76
                3888888999999999998888888888899********************999 PP

>> PF05036.8  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05      0.15      45      70 ..      18      42 ..      13      47 .. 0.85
   2 ?   -1.4   0.1      0.72   2.5e+03      54      61 ..      69      76 ..      61      77 .] 0.59

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.4e-05
                EEE--------HHHHHHHHHT.T--- CS
   PF05036.8 45 rVrvGpfasreeAqaalkkLkkaagi 70
                r+r+G   ++eeA aalk L+ + ++
  MMETSP0890-20130614|5772_1 18 RLRFGTDNDKEEAVAALKVLA-RDKS 42
                99****************999.4444 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.72
                --HHHHHH CS
   PF05036.8 54 reeAqaal 61
                +eeA+aal
  MMETSP0890-20130614|5772_1 69 KEEAAAAL 76
                55555554 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.5e-05      0.15      36      78 ..       3      45 ..       1      63 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.5e-05
   PF12862.2 36 qkksyqyalLnlaslhadf...ghaeeAlkaleeairlArenkDks 78
                qk +y++al+ + +   +f   +++eeA++al+    lAr+++D++
  MMETSP0890-20130614|5772_1  3 QKTNYHSALIDSHVQRLRFgtdNDKEEAVAALK---VLARDKSDHK 45
                4689***************44334566777666...7999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.73
# Mc/sec: 252.77
//
Query:       MMETSP0890-20130614|5774_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-32  108.8   0.6    6.8e-32  108.5   0.4    1.1  1  PF02427.12 Photosystem I reaction centre subunit IV / PsaE


Domain annotation for each model (and alignments):
>> PF02427.12  Photosystem I reaction centre subunit IV / PsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.4     5e-36   6.8e-32       1      61 []      28      88 ..      28      88 .. 0.98

  Alignments for each domain:
  == domain 1    score: 108.5 bits;  conditional E-value: 5e-36
                ------EEE--TT-TTBT----EEEE--------EEEE-SS-------EEEE-CCCEEE-- CS
  PF02427.12  1 ikrgskVrilRkeSYWynevGtVasvdksgirYpvvvrfekvnyagvntnnfaedeleeve 61
                +++gs+VrilR+eSYW ne GtVas+d+sg rYpvvvrfekvny+gvn+nn+a+del+eve
  MMETSP0890-20130614|5774_1 28 VEKGSVVRILRPESYWANELGTVASIDQSGARYPVVVRFEKVNYQGVNSNNYAMDELVEVE 88
                689*******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 433.03
//
Query:       MMETSP0890-20130614|5775_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-23   82.7  63.6    5.9e-21   74.4  23.9    2.1  2  PF07690.11 Major Facilitator Superfamily
    7.6e-12   44.4  10.1    1.9e-11   43.0   7.0    1.6  1  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4  23.9   8.6e-25   5.9e-21      14     354 .]      83     481 ..      68     481 .. 0.75
   2 !   22.6  14.7   5.1e-09   3.5e-05      18     174 ..     344     522 ..     325     570 .. 0.74

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 8.6e-25
  PF07690.11  14 ilgpalplalaedlg......ispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaav..lvllllprepperkrkspaeel..........................................rkepaplvp.......awklllkppvlwillialllfffvfsglltllply.....lqevlglsp.glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft.......ssavwlllvlvliGf.glglvfptllalasdlappeerGtasglfntagslggalgp 354
                  +++++  +la+dlg      +++ ++gwl ++ +lg + +++l G  sd++Grr++lll++++ ++g  +++ f s   ++ l+lr++   +  + ++++  l+++++ +e+++ ++++++a+ +l  +lgp+++++l+  +  r + l+ a+l++ +a   l+l +l+ +++   ++s a  +                                                  +       ++ l +++p+++  +++  ++++++++ +  +pl+         l +s   l  ++++ +++++i+ i+  + +++++ +g+r  l la ++++l+++++ l++ +        +++++l+++++i   + g+ f ++ a++++++   +rG+a+g+++++ ++g a+gp
  MMETSP0890-20130614|5775_1  83 SVFTIAG-FLASDLGwvsnkdSAGYVAGWLGSALTLGRIPTAVLHGLASDKYGRRPTLLLTFFWIGVG-NIAFgF-SRNLYIALALRFIFLGALNGWVSLVGPLVTEIAGPERQNDVNAYVMASGALTQLLGPAAAAILYGKI-PRHPALAPALLGFALAClsLFLGFLWLPETLALKNSIAISKsraytrisietqntsnndsqevhsiesalqdvdlendqpeeeF-------DsdlhqedILPLHHNRPFIL-GVTIRSITGLALFASFDVIPLWaiatkHSGGLAFSRhQLAAVLTVAAFGQFIFNIS--AMAKVLRSIGNRVGLRLATAFGALGSAMIPLVGRFllssanfRDQLLALAPCIMIYYaAGGMSFNAVGAVVNNSVQDFARGKANGVATMFEAIGKAVGP 481
                 3444444.899999966555555666******************************************.666668.55555999999955555567777788**************************************666.466666666666555333566677777777777777777777799999999999999999998888888888887765555330.......13555564444555555555.55555555568888888888873333334444444474444444477777777777..888888999999999999999999999999999998888888777777777777666599999**********************************98 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 5.1e-09
  PF07690.11  18 alpl.alaed....lgispseigwlltlyslgyaiaslla.GrlsdrfGrrrvlllglllfalg.lllll...f..a.....sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslg.......WravFlilailsllaavlvllllp 174
                 ++pl a+a+     l +s +++  +lt+ ++g++i+++ a + +   +G r  l l+ ++ alg +++ l   f  +      +l  +l+ + ++  +++g+ f a+ a++   + +  rg+a+g+++++ ++G ++gp lg+ +  +s+           +F+++a +++++ vl   ll+
  MMETSP0890-20130614|5775_1 344 VIPLwAIATKhsggLAFSRHQLAAVLTVAAFGQFIFNISAmAKVLRSIGNRVGLRLATAFGALGsAMIPLvgrFllSsanfrDQLL-ALAPCIMIYYAAGGMSFNAVGAVVNNSVQDFARGKANGVATMFEAIGKAVGPTLGATMFaASIDmrpgplgAATTFFFIASALAVCSVL--TLLL 522
                 3344344444233366**********************995666666*****************6666664444441545544466.789999999***********************************************888466669999988777788888888888885..3332 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   7.0   2.9e-15   1.9e-11      37     431 ..     100     517 ..      35     529 .. 0.68

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 2.9e-15
  PF00083.19  37 sksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvi.vGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglgl.nktsnadgwrillglqlvpall.llllllflpeSprylvlkgkle.eArevlkk.....lrgsedadqeiqeekdslersreee.............aswkelfsqktvrqrlligvvlqifqqltGinaimyY.....sptifetlglsks..llvtiivgvvnfvftlvai.....flvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaig.......ggyvflvfagllvlfilf 431
                 +k++   +    g++ s++ +g++ ++++ gl++d++GR+++ll + +   +g++  +++    +++  ++ R+i +G   G++s++ P+ + EiA ++ +  + ++   + ++ +l++   +++l +k+        +  l +++a l l+l++l+lpe+   l lk+ +     + + +      ++s  ++qe+  + ++l+  + e+              ++++l     + +++++gv++ +++ l   +++ +      +++    l +s    ++v  +    +f+f + a+      +  r+G R +  +G++g a++ ++  + +ll +a+     +++  +i+++ a+ +++++ v  v+         R+ka ++a++   ++ ++ ++l ++++ a+        g+ + ++f + +++++ +
  MMETSP0890-20130614|5775_1 100 NKDS---AGYVAGWLGSALTLGRIPTAVLHGLASDKYGRRPTLLLTFFWIGVGNIAFGFSR---NLYIALALRFIfLGALNGWVSLVGPL-VTEIAGPERQNDVNAYVMASGALTQLLGPAAAAILyGKIPR-HPALAPALLGFALACLsLFLGFLWLPET---LALKNSIAiSKSRAYTRisietQNTSNNDSQEVHSIESALQDVDLENdqpeeefdsdlhqEDILPLH----HNRPFILGVTIRSITGLALFASFDVIplwaiATKHSGGLAFSRHqlAAVLTVAAFGQFIFNISAMakvlrSIGNRVGLRLATAFGALGSAMIPLV--GRFLLSSANFRDQLLALAPCIMIYYAAGGMSFNAVGAVV-NNSVQDFARGKANGVATMFEAIGKAVGPTLGATMFAASIdmrpgplGAATTFFFIASALAVCSV 517
                 2222...34678*************************************************...99999999998579999999999997.569**999998888888888899999999999999888888.444445555555554427888899****...7666666542223333334332666689999999999998888777788887777775333333333....34789999998888866666666554111113444444444444652222222244555555553322234445555555555555444433333..34555555556667777789****************888.88888999***********************999999888998888444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.91
# Mc/sec: 1537.88
//
Query:       MMETSP0890-20130614|5779_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-36  123.8   0.3    2.5e-35  120.8   0.0    2.3  2  PF01798.13 Putative snoRNA binding domain
    7.6e-25   87.6   1.4    1.2e-24   86.9   0.3    1.8  2  PF09785.4  Prp31 C terminal domain
    5.1e-17   61.3   0.3      1e-16   60.3   0.2    1.6  1  PF08060.8  NOSIC (NUC001) domain
  ------ inclusion threshold ------
      0.016   14.9   0.1      0.044   13.5   0.0    1.7  1  PF14201.1  Domain of unknown function (DUF4318)


Domain annotation for each model (and alignments):
>> PF01798.13  Putative snoRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.1   3.4e+02       2      41 ..      82     121 ..      81     128 .. 0.87
   2 !  120.8   0.0   7.2e-39   2.5e-35       6     146 ..     178     319 ..     173     323 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---H CS
  PF01798.13   2 ikelaerveeLaelrkqleeyieskmekiAPnltalvGek 41 
                 i e +e +++++e+ +++++ + +k ++  P l +lv ek
  MMETSP0890-20130614|5779_1  82 IVESNEVLSKIDEESNRVHRLLVEKYSHKFPELETLVPEK 121
                 567788889999***********************99876 PP

  == domain 2    score: 120.8 bits;  conditional E-value: 7.2e-39
                 HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---HHHHHHHHH---HHHHHT--HHHHTT------.----------------GGGSHHHHTS-SS----HHHHHHHHHHHHHHHHHH-----TH.....HHHHHHHHHHH CS
  PF01798.13   6 aerveeLaelrkqleeyieskmekiAPnltalvGekvgArLishaGsleeLaklpastiqvlGaeka.lfralktkaktpkyGliyqseliqkapkkvkgkiaRllaaKlalAarvDalseesdesvlgkelreelekrlek 146
                 ++++  L++ r  + +y+es+m kiAPn t+l+G+++ A Li++aG+le+La +pa+++  lG++k   ++++ ++a +p+ G++y ++l+q ap+  + ki +++aaK++l arvDa s++ ++   ++++ +e+++++e 
  MMETSP0890-20130614|5779_1 178 CNEIIGLDNDRIMILNYLESRMAKIAPNTTELIGAALTAMLIGTAGGLEKLAAVPACNLTCLGQHKYrDLAGFGNQAIMPHTGILYYADLVQAAPPPLRRKILKIVAAKTTLCARVDAHSNSLTDTSAAQAMVQEIKSKIEL 319
                 78999**********************************************************99952578888************************************************9999999**********986 PP

>> PF09785.4  Prp31 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.3   3.6e-28   1.2e-24       2     122 ..     326     445 ..     325     448 .. 0.86
   2 ?   -1.7   0.0      0.95   3.2e+03      87     117 ..     449     479 ..     445     481 .. 0.80

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 3.6e-28
   PF09785.4   2 akgkkaLPaPedkkkk.KRGGrraRkaKerlaltelrkaqNRmeFGkeeeevvq.edeevglGmlgkkagg.rirltqidektkaklskklkkrlqskkatasgvtsgtasslaftplqglelv 122
                 a+++kaLPaP+ + +k KRGG+r+RkaK++l++telr ++N+ +FG++   ++  + ++  +G++g+++ g r  ++q+++ +  + +kk+++++q ++ +     sg+assl+ftp+qg+el 
  MMETSP0890-20130614|5779_1 326 AQQVKALPAPDIATSKsKRGGKRVRKAKDKLRITELRGLANKRAFGTDFGTEYGdDAMGNDFGLMGQEGAGvRAPAQQKSSLSLHNKNKKQRTSIQLSSSAP----SGLASSLVFTPVQGIELA 445
                 6899*******966555*****************************999888886778999******99876777788877788888888888888766666....8***************96 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.95
   PF09785.4  87 kklkkrlqskkatasgvtsgtasslaftplq 117
                  +++ +l++++a++ +++sg++s la   ++
  MMETSP0890-20130614|5779_1 449 ASQQAKLDAANAKWFNSSSGFQSALATNKNE 479
                 5678889999999988889999999987766 PP

>> PF08060.8  NOSIC (NUC001) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.2     3e-20     1e-16       2      53 .]      82     133 ..      81     133 .. 0.98

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 3e-20
   PF08060.8   2 IiqaiellddiDkeinlfhmrlrewYswhFPELekivkdnidYakvVklign 53 
                 I++++e+l +iD+e n++h  l e+Ys +FPELe++v++++dYakvV+ i+n
  MMETSP0890-20130614|5779_1  82 IVESNEVLSKIDEESNRVHRLLVEKYSHKFPELETLVPEKLDYAKVVLRIRN 133
                 9************************************************987 PP

>> PF14201.1  Domain of unknown function (DUF4318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05     0.044      23      60 ..      49      86 ..      41      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
   PF14201.1 23 aiekYceengeslkFiskekPvtfeldnklYeveidye 60
                + e+Yc+   + l+F+s+++ v +e  nk Ye+ ++++
  MMETSP0890-20130614|5779_1 49 ESERYCQHMRSILNFMSRTNDVVAEEGNKEYEIIVESN 86
                569******************************88665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.80
# Mc/sec: 1449.80
//
Query:       MMETSP0890-20130614|5783_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-18   64.0   0.1    1.1e-17   63.9   0.0    1.0  1  PF08294.6 TIM21
      0.009   15.3   0.0      0.026   13.9   0.0    1.8  1  PF08695.5 Cytochrome oxidase complex assembly protein 1


Domain annotation for each model (and alignments):
>> PF08294.6  TIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.6e-21   1.1e-17      32     145 .]       3     114 ..       1     114 [. 0.91

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 1.6e-21
   PF08294.6  32 elf.spsgdtkifnrAlekveedeevrsvlgerlkayGeetrrdrWtRnrpivstrkldkeGkehlrmkFhvegkrkkgtvklelkesdasgklefryly.vdvpgekriylednk 145
                 elf s  ++++if++Al++v++de++ +++ge++k+yG  +   r +R   i  t+    +G +++r++F + g+  ++ v +e+ ++++    +++yl   d +  k ++l dn+
  MMETSP0890-20130614|5783_1   3 ELFpSRLSPNSIFDKALDQVRADERIARLVGEPIKGYGRDHGGHREGRRNFIENTNYKASDGSKRVRVRFNIAGPYSQAFVYAEVADNQK----DWVYLMvQDRRSGKVVVLVDNR 114
                 77734459**********************************99999999999999999***************************9995....9999995688888888888886 PP

>> PF08695.5  Cytochrome oxidase complex assembly protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.8e-06     0.026      23     104 ..       9     100 ..       1     112 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.8e-06
   PF08695.5  23 ktsssvvrsalyqlrrspevrelLGeeiplkssw............pwisGsintv..........qGkidlsfsvkGskgeGtvyltasReskeepfeleels 104
                  +  s++++al q+r++++++ l Ge  p+k               +        +          + ++ ++f++ G+ +++ vy +   ++k   + +  ++
  MMETSP0890-20130614|5783_1   9 LSPNSIFDKALDQVRADERIARLVGE--PIKGYGrdhgghregrrnF--------IentnykasdgSKRVRVRFNIAGPYSQAFVYAEVADNQKD--WVYLMVQ 100
                 5667899*******************..7776666677666666644........2222333454444799************999877666666..8776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 584.87
//
Query:       MMETSP0890-20130614|5782_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-15   54.8   1.0    1.5e-05   24.8   0.0    7.1  8  PF03457.9  Helicase associated domain
    5.4e-10   38.4   0.0    1.9e-09   36.6   0.0    2.0  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
      0.098   12.7   0.0       0.39   10.8   0.0    2.0  1  PF09969.4  Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.3e-09   1.5e-05       5      68 .]      61     135 ..      58     135 .. 0.89
   2 ?    0.1   0.0      0.17   7.9e+02      12      35 ..     159     192 ..     153     211 .. 0.68
   3 ?   -1.8   0.0      0.67   3.1e+03      57      66 ..     237     246 ..     231     248 .. 0.87
   4 !   13.1   0.0   1.5e-05     0.069       4      67 ..     306     379 ..     303     380 .. 0.91
   5 ?    3.9   0.0     0.011        51       5      30 ..     461     486 ..     458     493 .. 0.87
   6 ?    0.7   0.0      0.12   5.3e+02      56      68 .]     634     646 ..     632     646 .. 0.90
   7 ?   -0.2   0.0      0.22   9.8e+02      56      68 .]     718     730 ..     657     730 .. 0.68
   8 ?    0.0   0.0      0.18   8.2e+02      44      66 ..     806     828 ..     802     830 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.3e-09
   PF03457.9   5 ddaWeeglaaLrafaaehGhlnvPrdatee...........gfkLGqWlknqRaaarkgtLsperieqLealgfs 68 
                 +  W+  l aL+++++e+G+ +vP++ + +           + +LG+ ++ +R+a +    ++ r+e L++lgf+
  MMETSP0890-20130614|5782_1  61 ENEWQIVLKALKKYKEEYGNMRVPTRFRVPnddaswpedthDLRLGNKVAAIRSAGKYVSRDDSRREILDSLGFE 135
                 678****************76677776666777777**********************99*************95 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.17
   PF03457.9  12 laaLrafaaehG....h.ln.vPrdatee....g 35 
                 l aL+ +++ hG    h l  vPr +  +    g
  MMETSP0890-20130614|5782_1 159 LSALETYVELHGrksvHkLFvVPRLDPWPadirG 192
                 789*********6555343335554433355554 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.67
   PF03457.9  57 erieqLealg 66 
                  ri++Le+lg
  MMETSP0890-20130614|5782_1 237 KRIQRLEQLG 246
                 69******99 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 1.5e-05
   PF03457.9   4 addaWeeglaaLrafaaehGhlnvPrdatee..........gfkLGqWlknqRaaarkgtLsperieqLealgf 67 
                  d+a++  +a L+a+++  G  +vP++ + +          g+ LG  l+++R +    +  p+r+++L +lg+
  MMETSP0890-20130614|5782_1 306 SDEAFQVIIASLQAYRRIVGPGKVPQTFVIPdgepwpvhvrGVTLGLRLSKIRLNGSYVRDRPDRRQKLLELGV 379
                 5899****************88899987766999999****************9999999*********99997 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.011
   PF03457.9   5 ddaWeeglaaLrafaaehGhlnvPrd 30 
                 d ++++ l+aL +f +++G++ +P++
  MMETSP0890-20130614|5782_1 461 DFDFDDVLRALTEFERRYGDFDIPEN 486
                 6789999************9999987 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.12
   PF03457.9  56 perieqLealgfs 68 
                 p r+++L+++gf+
  MMETSP0890-20130614|5782_1 634 PKRRAALDRIGFD 646
                 78*********96 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.22
   PF03457.9  56 perieqLealgfs 68 
                 ++r ++L+a+gf+
  MMETSP0890-20130614|5782_1 718 KHRAQLLDAMGFV 730
                 4899999999996 PP

  == domain 8    score: 0.0 bits;  conditional E-value: 0.18
   PF03457.9  44 nqRaaarkgtLsperieqLealg 66 
                 ++R     g+L ++ +++L + +
  MMETSP0890-20130614|5782_1 806 RARGLSTSGKLKQDYVDRLTEYD 828
                 67888889***********9866 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   4.2e-13   1.9e-09       5      35 .]     797     828 ..     794     828 .. 0.97

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 4.2e-13
                 -HHHHHHHHHHTT------.HHHHHHHHHHHH CS
  PF02037.22   5 tVaeLKaeLkkrGLptsGk.KaeLieRLkehl 35 
                 tV +LK+++++rGL+tsGk K++ ++RL+e++
  MMETSP0890-20130614|5782_1 797 TVVQLKEICRARGLSTSGKlKQDYVDRLTEYD 828
                 9*****************************96 PP

>> PF09969.4  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.6e-05      0.39      58      91 ..     234     267 ..     228     269 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.6e-05
   PF09969.4  58 qiraaieeieelGvevkdldegLvDFpalldgee 91 
                  +++ i+++e+lG+++k +++ LvD+ a+ d  e
  MMETSP0890-20130614|5782_1 234 TVHKRIQRLEQLGLKLKHFQARLVDYDAVNDKTE 267
                 67899***********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.39u 0.42s 00:00:01.80 Elapsed: 00:00:00.95
# Mc/sec: 2128.97
//
Query:       MMETSP0890-20130614|5785_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   13.0   0.0       0.14   10.6   0.0    1.8  2  PF12259.3 Protein of unknown function (DUF3609)
       0.23   11.5   4.3       0.11   12.5   1.5    1.5  1  PF13908.1 Wnt and FGF inhibitory regulator


Domain annotation for each model (and alignments):
>> PF12259.3  Protein of unknown function (DUF3609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.032   2.2e+02     301     352 ..      40      91 ..      19      94 .. 0.76
   2 ?   10.6   0.0   2.1e-05      0.14     293     337 ..     131     174 ..     124     197 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.032
   PF12259.3 301 iavcpvivliillislawlYrtyrrkqlraaqrpvrevddlqdtknetstsn 352
                 ++++ +i   +++++  +l +t+ r+ ++a+ +   +v +  dt+ +tst +
  MMETSP0890-20130614|5785_1  40 FTIVDAINAAAVVLTHMMLPVTHARRMTAAVTHVAAVVRPYXDTSCDTSTLD 91 
                 5667777777778888888889999999888888888999999988888876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.1e-05
   PF12259.3 293 vedyplvviavcpvivliillislawlYrtyrrkqlraaqrpvre 337
                  +d ++++ a+++++v+i +l++l++  r+++ k++ ++ ++  +
  MMETSP0890-20130614|5785_1 131 SGDSKMTLYAIIGLVVVI-ILVGLGCCVRMHHIKKAGNMMKTDDT 174
                 57999********98765.679******99998887665544333 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.5   1.6e-05      0.11      30     125 ..      85     177 ..      77     198 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.6e-05
   PF13908.1  30 CGtCalrYCCsdlkearldqstCknedesvstd.g....kfrkpvedptkdlkvvlivsiilivvfivvliviftcskcvlekavrrqrpvvtsassttvq 125
                 C t +l   C++    +  + tC  + +s  ++ g       +++ d   d k++l+  i l+vv+i+v+ +  +c   v+   + ++  +++++  t + 
  MMETSP0890-20130614|5785_1  85 CDTSTLDTSCDA--SCDVCEDTCSSGGSSGGSSgGssggSSGDSSGDSSGDSKMTLYAIIGLVVVIILVGLG--CC---VRMH-HIKKAGNMMKTDDTATL 177
                 777777778884..6677889999998888777436667667777777777677776666555555555555..43...3333.34444444444422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       892  (0.0652428); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 701.54
//
Query:       MMETSP0890-20130614|5788_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-30  103.1   0.2    9.7e-30  102.4   0.1    1.4  1  PF04408.18 Helicase associated domain (HA2)
    1.5e-16   59.9   0.0    2.9e-16   59.0   0.0    1.4  1  PF07717.11 Oligonucleotide/oligosaccharide-binding (OB)-fold
  ------ inclusion threshold ------
      0.093   12.4   0.3       0.22   11.2   0.2    1.6  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.1   2.1e-33   9.7e-30       2     102 .]      95     184 ..      94     184 .. 0.94

  Alignments for each domain:
  == domain 1    score: 102.4 bits;  conditional E-value: 2.1e-33
                 HHHHHHHTTSB-----B------GGGSSS-HHHHHHH---GGGT-HHHHHHHHHHHTS---B---TTGHHHHHH..HHHTT-----.........-HHHHH CS
  PF04408.18   2 alklLkklgAldengnLTdlGkklaelPldprlakmLllsaefgcldeiltivallsvdsiflnpdkkkenaekdnaknkfkikearrklshpdgDhltll 102
                 al++L++lgAld++g LT+lG++++elPldp+lak+Ll+s ef+c++e+ltival+sv+++fl+p++k+++a++  ak++f          h dgDhltll
  MMETSP0890-20130614|5788_1  95 ALEQLNYLGALDDDGVLTELGRHMSELPLDPQLAKLLLASPEFKCANEALTIVALMSVPNVFLRPKQKQREADE--AKAQF---------AHVDGDHLTLL 184
                 99**************************************************************9888887776..88888.........68889****97 PP

>> PF07717.11  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   6.4e-20   2.9e-16       2      85 ..     219     296 ..     214     300 .. 0.88

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 6.4e-20
                 HHHHHHHHTT----......---TTSTTHHHHHHHHHH---TTSEEE.------EETT.G-B-EE-TTS---.---.SEEEEEEE CS
  PF07717.11   2 QLrelledlglkeeaakasrssenesakdaellrkallaGlypniarldekgdYktvr.kqrvfiHpsSvlaekkppewvvyael 85 
                 QL+++l ++   +       s++ +s k + ++rkal+aG+++++a+l+ +g+Y tv+ +q+v iHpsSvl  +kp +wv++ e 
  MMETSP0890-20130614|5788_1 219 QLSRILSKILQAP-----FISTDFSSPKYYTNIRKALVAGCFMQVAHLELEGHYLTVKdNQTVIIHPSSVLD-SKP-PWVLFDEF 296
                 6666666655442.....368999************************99**********************.777.*****986 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   4.8e-05      0.22      61      77 ..      16      32 ..       4      33 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.8e-05
                BSSHHHHHHH------T CS
  PF00271.26 61 prsvtsyiQriGRtgRa 77
                p s++s  Qr+GR+gR 
  MMETSP0890-20130614|5788_1 16 PISRASAKQRAGRAGRT 32
                99**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 961.74
//
Query:       MMETSP0890-20130614|5787_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   15.8   7.0      0.079   12.2   0.0    3.3  3  PF02735.11 Ku70/Ku80 beta-barrel domain


Domain annotation for each model (and alignments):
>> PF02735.11  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.9     0.003        41      13      83 ..     103     175 ..      98     188 .. 0.80
   2 ?    1.1   0.2     0.014   1.9e+02      19      67 ..     299     357 ..     287     362 .. 0.64
   3 !   12.2   0.0   5.8e-06     0.079     116     177 ..     425     491 ..     396     499 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.003
                 -B-SB----------EETTT--BEEEEEEEEES-------GGGEEEEE.E----EEEE-HHHHHHTT--S-.- CS
  PF02735.11  13 vysaveeakpkfksqlyeedneekrvktkkvvkktgkevsrediikgy.eyggekivlddeeleevkeess.k 83 
                 + + +e +++++k+ ++e+++++ + k++++ +k +k +   +i   +    ++   l+de+ ++++ +++ k
  MMETSP0890-20130614|5787_1 103 LLAKTELEERRRKQDKDERQRQQDIDKRETTKEKAEKKIPNFSISEFIiWLSNDTAFLSDEDKKDLNFKKTvK 175
                 56778889999999999********************988888888887888888888888888888877752 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.014
                 ---------EETTT--BEEEEEEEEES----..........---GGGEEEEEE----EE CS
  PF02735.11  19 eakpkfksqlyeedneekrvktkkvvkktgk..........evsrediikgyeyggeki 67 
                 eak+++ + +y ++n++    ++   +k+++           v+ ++i ++y ygg+++
  MMETSP0890-20130614|5787_1 299 EAKVTSMTSYYINNNDMDDDDDEPEQPKQDFtthimaandtSVDYNKICRAYDYGGKIV 357
                 55555555555554444444444444444445555555555999************998 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 5.8e-06
                 E--HHHHHHHHHHHHHCTEEEEEEE--SS.S---....EEEEEE----EEEE----EEEE---GGGB CS
  PF02735.11 116 egStaafsaLleallerdkaaicryvsrs.kskp....rlvaLvPqekekelpeglvlvqLpfaddv 177
                 + + aa++aL  +l++ d+  ++r +    ks++    +lvaL P++++ +l ++l l  Lp++d+ 
  MMETSP0890-20130614|5787_1 425 PRACAALTALCNSLRSMDQGLVARLTKPPtKSHMkptdKLVALAPYSSDSDLSDTLLLRPLPWRDQT 491
                 44679999****************985444555522337*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       851  (0.062244); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:01.05
# Mc/sec: 1807.54
//
Query:       MMETSP0890-20130614|5791_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   69.1   0.0    2.9e-19   68.3   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.8e-13   50.1   0.0    3.8e-13   49.1   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    8.8e-06   25.3   0.0    1.6e-05   24.5   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   6.4e-23   2.9e-19       1      69 [.      42     111 ..      42     112 .. 0.99

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 6.4e-23
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 ++Vgn+p+++t ++L++ F++ G+i ++ +++d  tgrs+gf++++F++  +ae+A+e+ ++k +ggr++
  MMETSP0890-20130614|5791_1  42 VYVGNIPYSMTTDDLYDTFGQEGRIIDAIVKTDvPTGRSRGFGIITFQEAAAAEHAIENWHNKLIGGRPI 111
                 7*******************************************************************98 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   8.3e-17   3.8e-13       1      68 [.      42     111 ..      42     111 .. 0.95

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 8.3e-17
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkk.lnlvlkgrti 68 
                 +yv+++p+s+t +dl + f++ g++ +  ++ +   gr+rgf++++f  +++A+ a+++ +n+ ++gr+i
  MMETSP0890-20130614|5791_1  42 VYVGNIPYSMTTDDLYDTFGQEGRIIDAIVKTDVPtGRSRGFGIITFQEAAAAEHAIENwHNKLIGGRPI 111
                 8*******************************9555***********************888******97 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.4e-09   1.6e-05      20      55 ..      78     115 ..      56     116 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.4e-09
   PF13893.1  20 k..ggqAfvefdtveaArkakeylngvklygktLkvey 55 
                 +  +g++ ++f+ ++aA++a+e+ ++++++g+++ v y
  MMETSP0890-20130614|5791_1  78 GrsRGFGIITFQEAAAAEHAIENWHNKLIGGRPIVVRY 115
                 1458******************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       731  (0.0534669); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.94
# Mc/sec: 938.15
//
Query:       MMETSP0890-20130614|5793_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   11.9   0.0      0.088   11.3   0.0    1.2  1  PF04710.9 Pellino
        0.1   11.1   0.0       0.15   10.6   0.0    1.1  1  PF04860.7 Phage portal protein


Domain annotation for each model (and alignments):
>> PF04710.9  Pellino
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05     0.088     207     235 ..      10      38 ..       6      47 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   PF04710.9 207 isvcGdvyelresrsaqakGklveeesnv 235
                 i vcG v + r srsa+ +G++ve  + +
  MMETSP0890-20130614|5793_1  10 IGVCGYVVDARTSRSAEIRGHQVERANQQ 38 
                 78*********************887655 PP

>> PF04860.7  Phage portal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.2e-05      0.15     248     297 ..     106     155 ..     100     162 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
   PF04860.7 248 iarafgVpphllgildkatysnieqqslaFvtntLlpllkrieqelnrkl 297
                 +a ++++p+ l  +  k+  s +  ++++F++++  p ++ri+q+++  +
  MMETSP0890-20130614|5793_1 106 VAVLYEIPKALADDILKNPTSQLAIAYRTFIRFEWVPEVERIAQAIETGM 155
                 8899*************999*************************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|5786_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-30  103.8   2.1    1.1e-28  100.3   1.2    2.6  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    7.1e-28   96.7   0.1    1.2e-27   95.9   0.0    1.4  1  PF02852.17 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
    7.9e-18   64.5   0.5    6.6e-14   51.9   0.0    2.7  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.3e-06   27.4   1.1    3.4e-06   26.0   0.8    1.7  1  PF00890.19 FAD binding domain
    3.9e-06   26.0   0.6    6.8e-06   25.2   0.4    1.4  1  PF01946.12 Thi4 family
    0.00014   20.3   3.0    0.00084   17.7   0.2    2.3  3  PF03486.9  HI0933-like protein
    0.00021   20.3   0.1    0.00029   19.9   0.1    1.3  1  PF12831.2  FAD dependent oxidoreductase
    0.00026   19.8   1.3    0.00031   19.6   0.3    1.6  2  PF01266.19 FAD dependent oxidoreductase
     0.0017   17.1   1.9      0.003   16.3   1.3    1.4  1  PF01134.17 Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.024   14.5   0.6      0.024   14.5   0.4    2.0  1  PF13450.1  NAD(P)-binding Rossmann-like domain
      0.045   12.5   0.1      0.063   12.0   0.0    1.3  1  PF05834.7  Lycopene cyclase protein
       0.11   12.1   0.2        3.9    7.0   0.0    2.4  2  PF13454.1  FAD-NAD(P)-binding
       0.15   10.9   0.1       0.15   10.9   0.1    1.6  2  PF01494.14 FAD binding domain


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   1.2   1.1e-31   1.1e-28       1     199 [.      99     419 ..      99     420 .. 0.83

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 1.1e-31
                 SEEEE----HHHHHHHHHHHTTSEEEEE...........CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH...................HHHHHHHHCTCEE..EHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-...........................................................................................-GGGC.HHSS--B...ESSSSBBE-TTSBC.SSTTEEE---TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................................................................xxxxx.xxxxxxx...xxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali...........ekeggtcvnrgclpkkllvevaegreeleelal...................kvvdelekagiei..lleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG...........................................................................................tklla.ekagvel...dprggivVdeylrt.svpgiyaiGDvaegk 199
                 dvviiGgG++Gl+++k++a+ g+kva++           +++ggtcvn+gc+pkkl++ ++   e+++e+a                    +v+d++++ ++++   l++  +++ +  ++++  +  + +d+kg++ ++++ + +iA+G+rp++l+ipg+e+      v+dsd++++l+++p +v+ +G                                                                                           tk+l+  ++  +l   dp+ + ++ ey +  + p+ y iGDv++g+
  MMETSP0890-20130614|5786_1  99 DVVIIGGGSGGLACSKECARLGAKVAVLdfvkpspagstWGLGGTCVNVGCIPKKLMHTASILGETVKEDAGafgwkdavigahdwesmvsSVQDHIKSLNFKYrvALREAGITYLNRYATFKDAHTLECVDKKGTISTLTAARFIIAVGGRPSRLDIPGSEY------VIDSDDLFSLEKSPGRVLCIGagyialecggflaglgypttcmvrsvplrtfdrecatkiethmknhginfqigvtpkkiekstsgtllvtdssgatneydtvllavgriadTKNLNlVAVPGALdsvDPKSAKLICEYEQLpTAPHLYGIGDVVHGR 419
                 8*************************************************************99999985557******************7777777766666115557777777888888666666778899**************************854......9***********************************************************99999999999888888777777777777777777777777777777666664444222221112223444444444444447799999999999875 PP

>> PF02852.17  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   1.2e-30   1.2e-27       1     108 [.     450     564 ..     450     566 .. 0.96

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 1.2e-30
                 BEEEEESSSEEEE----HHHHHHHT....EEEEEEEECCGHHTTTTT.....CCEEEEEEEET.TTTBB---EEEETTHHHHHHHHHHHHHCT-BHHHHHTSBSSSSSSGGGHHH CS
  PF02852.17   1 vpsvvftdpeiasvGlteeeAkkagge..ikvgklpfkandralayae....tkgfvKlvvda.etgkvlGahivGpgaseliqelavaikagltvedlantvfihPtlsealke 108
                 v+++vft +e++++Gl+eeeAk++ ge  i+++ ++f +++++l +      +  f+Kl++d+ ++ k++G+h +Gp+a+e+ q++avai++g+t +d+a+tv+ihPt++e++++
  MMETSP0890-20130614|5786_1 450 VATTVFTPLEYGTIGLSEEEAKEKLGEnnIEIYISEFIPLEQTLSESRnergDGAFAKLICDKtQNSKIIGFHYLGPNAGEVTQGFAVAIRKGATYTDFASTVGIHPTVAEEFTT 564
                 689**********************999***************999988888899********999**********************************************986 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.5     0.001       1.1       2      29 ..     100     127 ..      99     130 .. 0.94
   2 !   51.9   0.0   6.3e-17   6.6e-14       1      74 [.     277     348 ..     277     356 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.001
                 EEEE---HHHHHHHHHHHHTTSEEEEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvie 29 
                 vv++GGG  Gl +  + a+lg+kV v++
  MMETSP0890-20130614|5786_1 100 VVIIGGGSGGLACSKECARLGAKVAVLD 127
                 8***********************9976 PP

  == domain 2    score: 51.9 bits;  conditional E-value: 6.3e-17
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEESEEEEE CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkklekngievllntkveeiegsadgve 74 
                 rv+ +G+Gyi+lE++++la lg  +t++ r+  l+ ++d+e+a+ ++++++++gi++  + ++++ie+s++g +
  MMETSP0890-20130614|5786_1 277 RVLCIGAGYIALECGGFLAGLGYPTTCMVRSVPLR-TFDRECATKIETHMKNHGINFQIGVTPKKIEKSTSG-T 348
                 799*********************99999987777.********************************9998.3 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.8   3.3e-09   3.4e-06       1      47 [.      99     145 ..      99     152 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.3e-09
                 SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-----B- CS
  PF00890.19   1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsqGgida 47 
                 Dvv+iG+G +Gla++ e+a+ g+kvav++ +++    ++w  Gg ++
  MMETSP0890-20130614|5786_1  99 DVVIIGGGSGGLACSKECARLGAKVAVLDFVKPSPAGSTWGLGGTCV 145
                 9******************************9988899999999875 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.4   6.4e-09   6.8e-06      12      62 ..      92     144 ..      81     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6.4e-09
                 HHHHTEEEEEEE-------HHHHHHHTSTS-EEEEE.SSS--------.---- CS
  PF01946.12  12 llkyaesDvvivGaGssGltaayylakkdlkvaile.rklsiGGGawl.GGql 62 
                  ++  e Dvvi+G+Gs Gl++++  a+ + kva+l+  k s+ G +w+ GG  
  MMETSP0890-20130614|5786_1  92 KDHGYEYDVVIIGGGSGGLACSKECARLGAKVAVLDfVKPSPAGSTWGlGGTC 144
                 4556799****************************945889*****9636655 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2     8e-07   0.00084       1      30 [.      98     127 ..      98     142 .. 0.94
   2 ?   -4.1   0.0       3.5   3.7e+03     150     164 ..     235     249 ..     220     250 .. 0.77
   3 ?    2.5   0.0     0.033        35     116     163 ..     322     369 ..     315     374 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8e-07
   PF03486.9   1 kdviviGgGaAGlmaAisaakrgakVllld 30 
                 +dv++iGgG  Gl ++ ++a+ gakV++ld
  MMETSP0890-20130614|5786_1  98 YDVVIIGGGSGGLACSKECARLGAKVAVLD 127
                 69***************************9 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 3.5
   PF03486.9 150 eeeleadklvlAtGG 164
                  ++l+a++ ++A+GG
  MMETSP0890-20130614|5786_1 235 ISTLTAARFIIAVGG 249
                 467899999****99 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.033
   PF03486.9 116 lkelkeagvkirletevksvekeedgafrvktkseeeleadklvlAtG 163
                 ++++k+ g++++   + k++ek+++g++ v+ +s+ + e d+++lA+G
  MMETSP0890-20130614|5786_1 322 ETHMKNHGINFQIGVTPKKIEKSTSGTLLVTDSSGATNEYDTVLLAVG 369
                 678999********************9999999999**********99 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   2.8e-07   0.00029       1      29 [.      99     127 ..      99     232 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.8e-07
   PF12831.2   1 DvvVvGGgpaGvaAAiaAarlGakvlLve 29 
                 Dvv++GGg++G+a+   +arlGakv++++
  MMETSP0890-20130614|5786_1  99 DVVIIGGGSGGLACSKECARLGAKVAVLD 127
                 9************************9875 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   2.9e-07   0.00031       1      45 [.      99     144 ..      99     218 .. 0.88
   2 ?   -3.0   0.0       2.2   2.3e+03     153     200 ..     321     369 ..     313     386 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.9e-07
                 EEEEE----HHHHHHHHHHHTT-EEEEEESS.STTSSCGGGS-EEE CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekg.diasgaSgrnggli 45 
                 dvviiGgG  Gl++  e+ar g+kV++l+   + ++g+++  gg +
  MMETSP0890-20130614|5786_1  99 DVVIIGGGSGGLACSKECARLGAKVAVLDFVkPSPAGSTWGLGGTC 144
                 9****************************99999999999988887 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.2
                 HHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES.EEE.EEEEE--- CS
  PF01266.19 153 laraaeelGveiiegtkVtglereggrvsgvetedgsira.dkvvlAaG 200
                 +  + +++G ++  g++ +++e++ ++   v+ ++g + + d+v lA G
  MMETSP0890-20130614|5786_1 321 IETHMKNHGINFQIGVTPKKIEKSTSGTLLVTDSSGATNEyDTVLLAVG 369
                 5556677888888888888888888886645557777555599999988 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.3   2.8e-06     0.003       1      45 [.      99     154 ..      99     173 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.8e-06
                 SEEEE-------HHHHHHHH----EEEE...........ES-GGG-----SSSEE- CS
  PF01134.17   1 dviViGgGhAGceAAlaaarlGakvlLi...........thkldtiaelsCnpsig 45 
                 dv++iGgG  G++++ ++arlGakv+ +               +t+++++C p   
  MMETSP0890-20130614|5786_1  99 DVVIIGGGSGGLACSKECARLGAKVAVLdfvkpspagstWGLGGTCVNVGCIPKKL 154
                 79*************************99999999888767778999999988665 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   2.3e-05     0.024       1      26 [.     102     127 ..     102     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.3e-05
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvle 26 
                 I+G+G +Gl++  ++a+ g +v vl+
  MMETSP0890-20130614|5786_1 102 IIGGGSGGLACSKECARLGAKVAVLD 127
                 9************************9 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     6e-05     0.063       1      44 [.      99     138 ..      99     248 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6e-05
   PF05834.7   1 DlvivGaGlAglllAlrlreakpglrvllidagpkllfgnnytW 44 
                 D+vi+G+G  gl+++ +   a++g +v+++d  +    ++  tW
  MMETSP0890-20130614|5786_1  99 DVVIIGGGSGGLACSKEC--ARLGAKVAVLDFVKPS--PAGSTW 138
                 9*****************..**********976666..666677 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.082        86       1      37 [.     101     135 ..     101     140 .. 0.78
   2 ?    7.0   0.0    0.0038       3.9     102     154 ..     316     369 ..     310     371 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.082
   PF13454.1   1 aIiGaGprGlsvlerLlarakkekpleitvfdpspag 37 
                 +IiG+G  Gl++ ++ ++    +k   ++ + pspag
  MMETSP0890-20130614|5786_1 101 VIIGGGSGGLACSKECARLG--AKVAVLDFVKPSPAG 135
                 6***********99999985..666666677777776 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0038
   PF13454.1 102 wvfeelvarlpegvtvrvhraevvdlepegdgq.tvlladgesleadaVvlAtG 154
                 +++++++++++++    ++  +  ++e++++g   v+ ++g++ e+d V+lA+G
  MMETSP0890-20130614|5786_1 316 ECATKIETHMKNHGINFQIGVTPKKIEKSTSGTlLVTDSSGATNEYDTVLLAVG 369
                 55666666665554444455666789999999725556788999*********9 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014      0.15       1      31 [.      97     127 ..      97     132 .. 0.94
   2 ?   -4.1   0.2       5.1   5.3e+03       4      26 ..     278     300 ..     277     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
                 EECEEE--------HHHHHHHHH.HHEEEEE CS
  PF01494.14   1 etdVlIVGaGpaGlmlallLseaGvrvvlve 31 
                 e+dV+I+G+G  Gl  +++ ++ G +v +++
  MMETSP0890-20130614|5786_1  97 EYDVVIIGGGSGGLACSKECARLGAKVAVLD 127
                 689************************9998 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 5.1
                 EEE--------HHHHHHHHH.HH CS
  PF01494.14   4 VlIVGaGpaGlmlallLseaGvr 26 
                 Vl +GaG   l  + +L+  G  
  MMETSP0890-20130614|5786_1 278 VLCIGAGYIALECGGFLAGLGYP 300
                 999*****999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:01.01
# Mc/sec: 1376.13
//
Query:       MMETSP0890-20130614|5790_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.3   0.3    1.9e-11   43.7   0.1    2.6  2  PF13921.1  Myb-like DNA-binding domain
    2.5e-16   59.3   3.1    7.5e-09   35.3   0.0    3.8  4  PF00249.26 Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   2.8e-15   1.9e-11       1      59 [.     116     175 ..     116     176 .. 0.96
   2 !   14.1   0.0   4.9e-06     0.034      18      44 ..     217     247 ..     206     265 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 2.8e-15
   PF13921.1   1 WtdeEdeiLlklveeyg.ndWseIaeelgrRtplacqdrwknkLrpkisrapwtkeedqk 59 
                 Wtd+Ed +L   v ++g + W+ Ia   g+R++ +c +rwk+ L+  + +++wt+eed++
  MMETSP0890-20130614|5790_1 116 WTDAEDAALVAGVDKFGeRRWKAIAAGVGSRDHMQCLQRWKKVLKRGLAKGQWTREEDEL 175
                 ****************8459********99****************************86 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 4.9e-06
   PF13921.1  18 n....dWseIaeelgrRtplacqdrwknkLr 44 
                 n    dW +Ia  l  R++ ++++rwk+ L+
  MMETSP0890-20130614|5790_1 217 NserfDWGSIAAKLPLRSAREVRERWKYALS 247
                 33445*********88***********9765 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.1e-12   7.5e-09       3      48 .]     115     159 ..     113     159 .. 0.97
   2 !    8.9   0.3    0.0002       1.3       1      16 [.     165     180 ..     165     183 .. 0.89
   3 !   13.0   0.0   1.1e-05     0.074      23      45 ..     222     243 ..     187     246 .. 0.89
   4 ?   -2.2   0.0       0.6   4.1e+03      15      25 ..     250     260 ..     250     285 .. 0.63

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.1e-12
                 SS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHHT CS
  PF00249.26   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                 rWT  Ed  lv +v ++G ++Wk+Ia+ +g  R   qc  rw k+l
  MMETSP0890-20130614|5790_1 115 RWTDAEDAALVAGVDKFGERRWKAIAAGVG-SRDHMQCLQRWKKVL 159
                 9*****************************.************976 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0002
                 TTSS-HHHHHHHHHHH CS
  PF00249.26   1 rgrWTteEdellvdav 16 
                 +g WT eEdel+ +a 
  MMETSP0890-20130614|5790_1 165 KGQWTREEDELIREAM 180
                 799*********9996 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 1.1e-05
                 .HHHHHHHCTTTS-HHHHHHHHH CS
  PF00249.26  23 tWktIartmgkgRtlkqcksrwq 45 
                 +W +Ia++++  R++ ++++rw 
  MMETSP0890-20130614|5790_1 222 DWGSIAAKLP-LRSAREVRERWK 243
                 7*********.9**********6 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.6
                 HHHHTTS-.HH CS
  PF00249.26  15 avkqlGggtWk 25 
                 a +++G++t++
  MMETSP0890-20130614|5790_1 250 AQHRHGTDTPS 260
                 56899999554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1348  (0.0985957); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:00.99
# Mc/sec: 1621.78
//
Query:       MMETSP0890-20130614|5797_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-26   90.3   2.8    9.8e-14   50.5   0.1    2.1  2  PF00400.27 WD domain, G-beta repeat
     0.0012   16.9   0.4      0.027   12.5   0.0    2.0  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.02   14.4   0.1       0.19   11.3   0.1    2.0  2  PF08662.6  Eukaryotic translation initiation factor eIF2A
      0.034   13.5   0.3      0.057   12.7   0.2    1.3  1  PF13360.1  PQQ-like domain
      0.042   13.3   0.1        3.4    7.3   0.0    2.2  2  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.2   4.5e-14   1.2e-10       2      39 .]       1      37 [.       1      37 [. 0.97
   2 !   50.5   0.1   3.6e-17   9.8e-14       2      39 .]      42      79 ..      41      79 .. 0.96

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 4.5e-14
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++++l+gHt++ tc++fs dg++++++++ +t ++Wd
  MMETSP0890-20130614|5797_1  1 KLLHILEGHTHFLTCCKFSKDGRRVVTSGD-KTAKIWD 37
                5799**************************.******9 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 3.6e-17
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++ tl+gHt+ V++++fspdg++++++S+Dgt r+W+
  MMETSP0890-20130614|5797_1 42 TLLLTLSGHTHLVNACDFSPDGTRVVTASYDGTARVWN 79
                7789*********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.1    0.0054        15     238     256 ..      28      46 ..      14      56 .. 0.83
   2 !   12.5   0.0   9.9e-06     0.027     219     253 ..      55      85 ..      47      89 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0054
   PF11715.3 238 srDgkLRvWnletgqclrt 256
                 s D++ ++W+  tg++l t
  MMETSP0890-20130614|5797_1  28 SGDKTAKIWDAVTGTLLLT 46 
                 779***********99655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 9.9e-06
   PF11715.3 219 asldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                 ++ d+s+    + t v+t s Dg+ RvWn e+g++
  MMETSP0890-20130614|5797_1  55 NACDFSP----DGTRVVTASYDGTARVWNAENGTL 85 
                 5566666....556677***************998 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011        31     146     162 ..      13      29 ..       3      53 .. 0.73
   2 ?   11.3   0.1   6.9e-05      0.19     108     171 ..      18      79 ..      15      87 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.011
   PF08662.6 146 atlvewspdgryvlTat 162
                  t +++s dgr v+T+ 
  MMETSP0890-20130614|5797_1  13 LTCCKFSKDGRRVVTSG 29 
                 5889********99985 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.9e-05
   PF08662.6 108 wspqgrlvllaGfgnlaGeleiydvkklkkiaka..easnatlvewspdgryvlTattsprlrvdn 171
                 +s+ gr v+++G +      +i+d  + + + +   +      +++spdg+ v+Ta+     rv n
  MMETSP0890-20130614|5797_1  18 FSKDGRRVVTSGDKTA----KIWDAVTGTLLLTLsgHTHLVNACDFSPDGTRVVTASYDGTARVWN 79 
                 6666666666665554....78888855555443114556678*************9776666654 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.1e-05     0.057      36      98 ..      21      85 ..      13      87 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-05
   PF13360.1 36 ggtlfvasakgrlvaldaatGkvlWskslegeiega.p.lvaggrvvvvtadnslvaldaetGkl 98
                +g+ +v+s++ +   +da tG++l + s    +++a     +g rvv ++ d++ +  +ae+G+l
  MMETSP0890-20130614|5797_1 21 DGRRVVTSGDKTAKIWDAVTGTLLLTLSGHTHLVNAcDfSPDGTRVVTASYDGTARVWNAENGTL 85
                56666667999999999999999999998777777763478888888888999999999999976 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.012        33      15      24 ..      17      26 ..      14      32 .. 0.85
   2 ?    7.3   0.0    0.0012       3.4      15      24 ..      58      67 ..      55      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.012
                EE-----EEE CS
   PF07676.7 15 awSPDGkkiv 24
                 +S+DG++ v
  MMETSP0890-20130614|5797_1 17 KFSKDGRRVV 26
                59*****987 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0012
                EE-----EEE CS
   PF07676.7 15 awSPDGkkiv 24
                 +SPDG++ v
  MMETSP0890-20130614|5797_1 58 DFSPDGTRVV 67
                69*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.44s 00:00:00.84 Elapsed: 00:00:00.67
# Mc/sec: 321.90
//
Query:       MMETSP0890-20130614|5804_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 822.96
//
Query:       MMETSP0890-20130614|5806_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 386.84
//
Query:       MMETSP0890-20130614|5807_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.74
# Mc/sec: 1667.73
//
Query:       MMETSP0890-20130614|5805_1  [L=851]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-86  285.6   0.0    1.5e-45  154.4   0.0    2.5  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.1e-16   60.6   0.0    8.4e-08   32.9   0.0    3.2  2  PF13207.1  AAA domain
    6.1e-13   48.2   0.0    1.2e-05   24.3   0.0    2.7  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    1.2e-12   48.3   3.9    1.4e-05   25.4   1.1    3.7  2  PF13191.1  AAA ATPase domain
      2e-12   47.1   0.0    3.6e-05   23.5   0.0    2.9  2  PF13671.1  AAA domain
    2.8e-12   46.7   0.1    0.00042   20.3   0.0    4.2  2  PF13401.1  AAA domain
    6.9e-11   41.9   0.0    0.00018   21.1   0.0    3.6  2  PF07728.9  AAA domain (dynein-related subfamily)
    1.2e-10   40.5   0.0    8.1e-05   21.3   0.0    2.5  2  PF06068.8  TIP49 C-terminus
    5.6e-10   39.5   0.0    0.00016   21.8   0.0    2.9  2  PF13238.1  AAA domain
    1.3e-09   37.7   0.0    2.9e-09   36.6   0.0    1.7  1  PF02359.13 Cell division protein 48 (CDC48), N-terminal domain
    1.6e-09   37.6   0.0     0.0021   17.8   0.0    2.4  2  PF13173.1  AAA domain
    2.2e-09   37.3   0.0     0.0015   18.3   0.0    2.7  2  PF07724.9  AAA domain (Cdc48 subfamily)
    2.3e-09   36.5   0.6    0.00058   18.9   0.0    3.2  3  PF06414.7  Zeta toxin
    1.9e-07   31.0   0.2      0.019   14.8   0.0    3.0  2  PF13521.1  AAA domain
    2.4e-07   30.2   3.4      0.065   12.5   0.0    3.7  3  PF13481.1  AAA domain
    3.9e-07   30.1   0.0      0.016   15.2   0.0    2.7  2  PF00910.17 RNA helicase
    1.2e-06   27.9   0.1      0.057   12.7   0.0    2.5  2  PF01695.12 IstB-like ATP binding protein
    1.5e-06   27.4   0.2      0.041   12.9   0.0    2.6  2  PF01078.16 Magnesium chelatase, subunit ChlI
    4.4e-06   26.2   0.0       0.27   10.7   0.0    3.6  3  PF05729.7  NACHT domain
    7.2e-06   25.6   0.0      0.027   13.9   0.0    2.5  2  PF01443.13 Viral (Superfamily 1) RNA helicase
    1.3e-05   24.8   0.2      0.039   13.4   0.0    2.4  2  PF13479.1  AAA domain
    1.6e-05   24.4   3.2      0.055   13.0   0.1    3.3  2  PF13245.1  Part of AAA domain
    2.3e-05   23.2   0.0       0.15   10.7   0.0    2.3  2  PF01057.12 Parvovirus non-structural protein NS1
    2.4e-05   24.0   0.0      0.059   12.9   0.0    3.1  2  PF01637.13 Archaeal ATPase
     0.0003   20.5   0.1        0.5   10.1   0.0    2.5  2  PF01202.17 Shikimate kinase
    0.00053   19.0   0.0       0.11   11.4   0.0    2.5  2  PF06745.8  KaiC
    0.00082   19.2   0.0       0.48   10.2   0.0    2.5  2  PF13189.1  Cytidylate kinase-like family
     0.0013   18.2   0.0        1.4    8.3   0.0    2.5  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0013   18.0   0.0        1.2    8.4   0.0    3.0  2  PF00158.21 Sigma-54 interaction domain
     0.0014   18.1   0.0       0.93    9.0   0.0    2.6  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0022   16.7   0.0       0.38    9.4   0.0    2.2  2  PF00931.17 NB-ARC domain
     0.0026   18.0   0.0       0.51   10.5   0.0    2.5  2  PF13476.1  AAA domain
     0.0032   16.1   0.0       0.95    8.0   0.0    2.2  2  PF03215.10 Rad17 cell cycle checkpoint protein
     0.0035   16.4   0.1       0.73    8.8   0.0    2.3  2  PF01745.11 Isopentenyl transferase
     0.0039   16.5   0.0        2.4    7.4   0.0    2.4  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0041   15.9   0.0       0.46    9.2   0.0    2.4  2  PF05673.8  Protein of unknown function (DUF815)
     0.0064   15.6   0.5        1.3    8.1   0.0    3.0  3  PF12846.2  AAA-like domain
  ------ inclusion threshold ------
       0.01   14.9   0.1        1.5    7.8   0.0    2.5  2  PF02562.11 PhoH-like protein
      0.011   15.4   0.0       0.94    9.1   0.0    2.3  2  PF04851.10 Type III restriction enzyme, res subunit
      0.012   15.1   0.0       0.16   11.4   0.0    2.3  2  PF07931.7  Chloramphenicol phosphotransferase-like protein
      0.016   14.8   0.1        3.4    7.2   0.0    2.8  2  PF03266.10 NTPase
      0.016   15.0   0.0       0.27   11.1   0.0    2.5  2  PF01926.18 50S ribosome-binding GTPase
      0.017   14.2   0.1       0.66    9.0   0.0    2.5  2  PF08433.5  Chromatin associated protein KTI12
      0.017   14.4   0.0       0.99    8.8   0.0    2.4  2  PF13555.1  P-loop containing region of AAA domain
      0.018   14.3   0.0         15    4.8   0.0    3.7  4  PF00270.24 DEAD/DEAH box helicase
      0.027   13.9   0.0        2.6    7.4   0.0    2.5  2  PF13604.1  AAA domain
       0.03   13.6   0.0        1.6    7.9   0.0    3.2  3  PF00625.16 Guanylate kinase
      0.031   14.1   0.3       0.83    9.4   0.0    2.7  2  PF13304.1  AAA domain
      0.047   13.2   0.0        7.1    6.0   0.0    3.0  3  PF00308.13 Bacterial dnaA  protein
      0.049   13.3   0.0       0.14   11.8   0.0    1.7  1  PF01568.16 Molydopterin dinucleotide binding domain
      0.057   12.3   1.7         16    4.3   0.8    3.1  2  PF00154.16 recA bacterial DNA recombination protein
      0.077   12.3   0.1        4.1    6.6   0.0    2.5  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.095   12.1   0.0        5.6    6.4   0.0    2.4  2  PF13086.1  AAA domain
       0.12   11.2   0.0         12    4.6   0.0    2.6  3  PF07693.9  KAP family P-loop domain
       0.12   11.2   0.0        8.8    5.0   0.0    2.2  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
       0.15   10.3   0.0        1.9    6.7   0.0    2.1  2  PF13166.1  AAA domain
       0.16   11.3   0.0        6.7    6.0   0.0    2.7  3  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.0   5.7e-40   1.4e-37       1     131 [.     292     428 ..     292     429 .. 0.88
   2 !  154.4   0.0   6.4e-48   1.5e-45       1     131 [.     577     709 ..     577     710 .. 0.97

  Alignments for each domain:
  == domain 1    score: 128.7 bits;  conditional E-value: 5.7e-40
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTT...S.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkk...eskvivigatnrpdkldpallr.gRfdrkieie 131
                 vllyGppG GKT++a+a+a+e+g++f+ i+g+e+lsk+ ge+e+++r+ f++a+++a p i+fiDE+dala++r    +++ +ee+r++ +L   ld++ ++   +s v+v++atnrp+ +d  l+r gR+dr++ ++
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYFFVINGAEILSKTPGEAEANLRKAFEQARKHA-PAIIFIDELDALAPRRdakAQASGGEEQRAARALCDLLDELADDmssTSAVVVLAATNRPNGIDASLRRfGRLDREVDVG 428
                 79******************************************************9.*****************994555555666666655555555555555888*************************99875 PP

  == domain 2    score: 154.4 bits;  conditional E-value: 6.4e-48
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vl+yGppG+GKTlla+avake+g++f++i+g+ell +++gese+++r+lf +a+++a p+ilf+DEida+ak+r   sg++se ++rv+nq+lte+dgv  ++ +v+vigatnrpd ld a+ r gR+d  ++i+
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSIKGPELLTMWFGESEANVRDLFAKARTSA-PCILFFDEIDAIAKQRgggSGGASEAGDRVINQILTEIDGVGVRK-DVFVIGATNRPDVLDAAITRpGRLDTLVYIP 709
                 79******************************************************9.******************9999*********************75.5*************************99998 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   3.5e-10   8.4e-08       2      92 ..     292     398 ..     292     490 .. 0.64
   2 !   24.0   0.0     2e-07   4.8e-05       2     109 ..     577     721 ..     577     738 .. 0.55

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 3.5e-10
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B-......-GGGS-B-----B--..SSGGGB-HHHHHHHH............H..HHHHHHTTS-----------......E CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..ll......reeglkelddgeres..kdadadllaaildglaa........kkdtlswvidgaleseldlrleead......e 92 
                 ++++GppGsGK+++a++Lae+ g   + ++   +l       e +l++  ++ r+    ++ +d+l+a + + +a        ++++   ++d           e ad      +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYFFVINGaeILsktpgeAEANLRKAFEQARKHapAIIFIDELDALAPRRDAkaqasggeEQRAARALCDL--------LDELADdmsstsA 398
                 789********************99888888655465555433333322222221134455555555443333323445555544444455555........3333332344322 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 2e-07
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B--GGGS-.B-----B..........--SSGGGB-HHHHHHHH..................H..HHHHHH.............TTS.---.--.------EEEEE----TTGGTTT-S CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..llreeglk.elddger..........eskdadadllaaildglaa..............kkdtlswvidg.............ale.sel.dl.rleeadeiiyldaplpecrkrllk 109
                 ++++GppG+GK+ la+++a++ g + +s++   l     +  e ++++r           + +   d+++ai+++                 +       idg             ++  +   ++ r  + d+++y+ +p+ ++r+ ++k
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSIKGpeL--LTMWFgESEANVRdlfakartsaPC-ILFFDEIDAIAKQRGGgsggaseagdrvinQ---ILTEIDGvgvrkdvfvigatNRPdVLDaAItRPGRLDTLVYIPLPDQASRASIFK 721
                 689**************************99643..3444433334443111111111133.3444444555444422444444444442222...2244444555555555544522222221333333666677777666666666666 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.2e-07   0.00015      53     114 ..     292     361 ..     287     366 .. 0.70
   2 !   24.3   0.0   5.1e-08   1.2e-05      53     113 ..     577     645 ..     532     650 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.2e-07
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgP.vlek.agdlaalltn.leek.....dvlfideihrls 114
                 vllyGpPG Gkt++a+ +a+e g+ + v  g  +l+k +g+  a l + +e+       ++fide+  l+
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYFFVINGAeILSKtPGEAEANLRKaFEQArkhapAIIFIDELDALA 361
                 9***********************9887776515555256655555431222111223699999988776 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 5.1e-08
   PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvl......ekagdlaalltnleekd..vlfideihrl 113
                 vl+yGpPG Gkt la+ +ake g+++ +  gP l      e ++++  l+++ +++   +lf dei  +
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSIKGPELltmwfgESEANVRDLFAKARTSApcILFFDEIDAI 645
                 9*******************************8844444444455555555444332337788887666 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.1   5.8e-08   1.4e-05      23     129 ..     288     394 ..     279     402 .. 0.60
   2 !   19.6   0.0   3.4e-06   0.00081      23      46 ..     574     597 ..     565     633 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 5.8e-08
   PF13191.1  23 sp.lllvtGpsGiGKSsLlrelakpille..rlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalgalipelegiiglq...alvalldaalartr 129
                  p  +l++Gp+G+GK+s++r+     l+e  +++f   +  ++l   + +++   lr++++q   +  a +  ++  +la   + +++++g +++    al++lld+++++  
  MMETSP0890-20130614|5805_1 288 PPrGVLLYGPPGSGKTSIARA-----LAEetGAYFFVINGAEILSK-TPGEAEANLRKAFEQARKHAPAIIFIDELDALAPRRDAKAQASGGEEQRaarALCDLLDELADDMS 394
                 3348*****************.....54411444444444444443.233333348888888888877777777777777777744444444555323366776666665544 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.4e-06
   PF13191.1  23 splllvtGpsGiGKSsLlrelakp 46 
                 s+ +l++Gp+G+GK+ L++++ak+
  MMETSP0890-20130614|5805_1 574 SRGVLFYGPPGCGKTLLAQAVAKE 597
                 338*****************6654 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.5e-07   3.6e-05       2     109 ..     292     432 ..     292     465 .. 0.61
   2 !   20.4   0.0   1.4e-06   0.00033       2      45 ..     577     622 ..     577     668 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.5e-07
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdt...............................lrkrlfgtdqqskt................dytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvrivylevpee 109
                 vll G+pGsGK+  a++l++++g  +++++  +                               +                             + +r++ +l + l +la +  s  + v++ atn+ +     +++ ++r+g  +r v + vp++
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGayFFVINGAEilsktpgeaeanlrkafeqarkhapaiifidE------------LdalaprrdakaqasggEEQRAARALCDLLDELADDMSSTSAVVVLAATNRPN----GIDASLRRFGRLDREVDVGVPDA 432
                 7899*******************977778888766666677766666666666666666665553............03333333333333333778888888889989998888888888888888754....23333333333334444444444 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.4e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfgtdqqsk 45 
                 vl+ G+pG+GK+ la++++k++g  +v +  ++l + +fg+   + 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGanFVSIKGPELLTMWFGESEANV 622
                 799********************88888899999999998655444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.7e-06   0.00042       7     123 ..     292     404 ..     288     408 .. 0.64
   2 !   16.4   0.0   2.8e-05    0.0068       7      44 ..     577     606 ..     573     683 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.7e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL........s..........eealeelrslldd..etgvklvlvG 123
                 ++++G++G+GKT  +r la+          ++ ++f+ ++           +ls+   +a++      l++a+++a +++   ++ iDE++ L        +            + ++l  l+dd  +t+  +vl+ 
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAE----------ETGAYFFVINGAE--------ILSKTPGEAEA-----NLRKAFEQARKHAPA-IIFIDELDALaprrdakaQasggeeqraaRALCDLLDELADDmsSTSAVVVLAA 404
                 799*****************..........6677777776666........66666644444.....455555555555555.999999999988766655145656634433333333444444777777777665 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 2.8e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfve 44 
                 ++++G++G+GKT+l++ +a++          a++v++ 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKEC--------GANFVSIK 606
                 789****************987........45554444 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   7.3e-07   0.00018       1      76 [.     291     359 ..     291     417 .. 0.77
   2 !   16.4   0.0   2.1e-05     0.005       1      37 [.     576     612 ..     576     649 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7.3e-07
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEver 76 
                 +vlL GppG+gK+++a+ lae +++ ++++++ + ++++    + ++          ++ ++ar   ++i+++DE++ 
  MMETSP0890-20130614|5805_1 291 GVLLYGPPGSGKTSIARALAEETGAYFFVINGAEILSKTPGEAEANL---------RKAFEQARkhAPAIIFIDELDA 359
                 59***************************999887776655555554.........5555555555666777777665 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 2.1e-05
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT-- CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtt 37 
                 +vl  GppG+gK+ la+ +a+  +++++ + +++ +t
  MMETSP0890-20130614|5805_1 576 GVLFYGPPGCGKTLLAQAVAKECGANFVSIKGPELLT 612
                 5899*******************99999998887444 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.4e-07   8.1e-05      51      98 ..     290     335 ..     285     348 .. 0.86
   2 !   16.4   0.0   1.1e-05    0.0026      51      97 ..     575     619 ..     570     629 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.4e-07
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 r+vLl Gppg+Gkt++a a+++e g    f +++g+e+ s     +e+
  MMETSP0890-20130614|5805_1 290 RGVLLYGPPGSGKTSIARALAEETG--AYFFVINGAEILSKTPGEAEA 335
                 89*********************99..7899********998777776 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.1e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 r+vL+ Gppg Gkt la a++ke g    fv+++g e+ ++    +e
  MMETSP0890-20130614|5805_1 575 RGVLFYGPPGCGKTLLAQAVAKECG--ANFVSIKGPELLTMWFGESE 619
                 89**********************9..679*****999877666555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.5e-07   0.00016       1      30 [.     292     321 ..     292     368 .. 0.78
   2 !   14.4   0.0   0.00013     0.031       1      29 [.     577     605 ..     577     634 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.5e-07
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdla 30 
                 +l+ G+pG+GKt++a++Lae++g   + ++
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYFFVIN 321
                 6899*****************855544444 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 0.00013
   PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdl 29 
                 +l+ G+pG+GKt la++ a+++g +  ++
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSI 605
                 6789*****************96555443 PP

>> PF02359.13  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.2e-11   2.9e-09      14      85 ..      76     148 ..      66     150 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.2e-11
  PF02359.13  14 grgivrvspedmeelgleegdvveieg.krk.tvaivwparpedegkgiIrmdgvtRknagvsigdeVtvrkae 85 
                   g + +s+e+meel l+egdvv+++g + + t + +++  + ++ ++   m++   kn++ +igd+V+++  e
  MMETSP0890-20130614|5805_1  76 NDGEIGLSEEKMEELALFEGDVVRVTGhRGRwTLCTAVTLGHLES-ENDCVMNQASLKNCRGRIGDQVKIKASE 148
                 5566779********************87789***********77.88888*******************9876 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-05    0.0035       5      73 ..     292     360 ..     289     406 .. 0.73
   2 !   17.8   0.0   8.6e-06    0.0021       5      74 ..     577     658 ..     574     710 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-05
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev 73 
                 ++++Gp ++GKt +++ la+e      ++ in  +   ++  + e  l ++f +  k    ++f+DE   +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETG--AYFFVINGAEILSKTPGEAEanLRKAFEQARKHAPAIIFIDELDAL 360
                 789****************9999..9999999999666443333343556666655668899*****9877 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 8.6e-06
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe..llelfleklkekkkylflDEiqev............p 74 
                 ++ +Gp ++GKt l++ +ake     +++ i+  +  +  + ++e  + +lf +  ++   +lf+DEi  +            +
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECG--ANFVSIKGPELLTMWFGESEanVRDLFAKARTSAPCILFFDEIDAIakqrgggsggasE 658
                 6789***********99998888..7777777666555333333343667777776668899******9986666666666653 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.3e-05    0.0078       6      94 ..     292     374 ..     288     392 .. 0.76
   2 !   18.3   0.0   6.4e-06    0.0015       6     106 ..     577     674 ..     573     680 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.3e-05
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG--------------- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSreg 94 
                 +ll gp g+Gkt +a+alae   +     + +++  e+l   +     +  + ++    ++    i+++DE+d  +p++ ++a+ S+ +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGA----YFFVINGAEILS--KTPGEAEANLRKAFEQARKHAPAIIFIDELDALAPRRDAKAQASGGE 374
                 6889*****************996....999999999999..33333333344444444444555************988888888754 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 6.4e-06
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT---EEEETGGG----...------------HHHHHHHH--- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdLLqilegg 106
                 +l+ gp g+Gkt+la+a+a+   +    +++ +   ell+    e+e  v  l  ++          i+++DEid i+++   +s ga   ++ V + +L  ++g 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGA----NFVSIKGPELLTmwFGESEANVRDLFAKAR----TSAPCILFFDEIDAIAKQrggGSGGASEAGDRVINQILTEIDGV 674
                 799*******************96....999999999999443444444444444333....23345************997777777777888999999877775 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.4e-06   0.00058      16      53 ..     289     325 ..     284     349 .. 0.86
   2 !   12.9   0.0   0.00016     0.038      19      53 ..     577     610 ..     574     632 .. 0.89
   3 ?    0.6   0.1      0.98   2.4e+02     152     193 ..     775     820 ..     753     828 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.4e-06
   PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                 p+ vll G+pG+GKts+a++l ee+ +  + +i++ e+
  MMETSP0890-20130614|5805_1 289 PRGVLLYGPPGSGKTSIARALAEET-GAYFFVINGAEI 325
                 899*********************9.999999988776 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00016
   PF06414.7  19 vllgGqpGAGKtslaellleelaagnivridaDel 53 
                 vl  G+pG+GKt la+++ +e  + n+v i++ el
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKEC-GANFVSIKGPEL 610
                 6677******************.*******99988 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.98
   PF06414.7 152 e....gRrvpkevhdeayeglpesvealeaekavdrir.vydrdgkt 193
                 +    +  +++++++ a+ ++++sv   e +k +d +    +r+++t
  MMETSP0890-20130614|5805_1 775 IseapPKIIQRKHFELAMANARRSVTDAELAK-FDAYAaKAQRKKTT 820
                 134535999******************99987.88888444555544 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.7e-05     0.019       2      35 ..     292     326 ..     291     389 .. 0.70
   2 !   13.1   0.0   0.00025     0.061       2      35 ..     577     615 ..     576     641 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.7e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvvpEvarevl 35 
                 + + G+p++GKT++++aLa++ g   +   + e+l
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEEtGAYFFVINGAEIL 326
                 6799***************8655443333333333 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00025
   PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvv....pEvarevl 35 
                 + + G+p++GKT l++a+a++ g + v    pE  ++++
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKEcGANFVsikgPELLTMWF 615
                 6799***************87754444225666666555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00056      0.13      12      54 ..     268     310 ..     261     315 .. 0.80
   2 ?    4.4   0.1      0.08        19     130     177 ..     337     384 ..     325     410 .. 0.67
   3 !   12.5   0.0   0.00027     0.065      29      57 ..     570     598 ..     546     623 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00056
   PF13481.1  12 aedldtppppldwlvk.gllprgsltllaGapgtGKStlalqla 54 
                  e ++tp++ +d     g+ p+ + +ll+G+pg+GK+++a +la
  MMETSP0890-20130614|5805_1 268 RELVETPLRNPDIFGAvGIAPPRG-VLLYGPPGSGKTSIARALA 310
                 455777777777776678899888.9************998887 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.08
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg.densnsdvgaviaalerlak 177
                 l++  + +++ + p+++ iD l++l++  d +++++ g+  +a+++l++
  MMETSP0890-20130614|5805_1 337 LRKAFEQARK-HAPAIIFIDELDALAPRrDAKAQASGGEEQRAARALCD 384
                 3444444555.44*************99755555553444444444443 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 0.00027
   PF13481.1  29 llprgsltllaGapgtGKStlalqlaaav 57 
                  lp+   +l++G+pg+GK+ la++ a  +
  MMETSP0890-20130614|5805_1 570 GLPPSRGVLFYGPPGCGKTLLAQAVAKEC 598
                 56888889**************9998765 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00064      0.15       1      26 [.     292     317 ..     292     336 .. 0.79
   2 !   15.2   0.0   6.7e-05     0.016       1      27 [.     577     603 ..     577     641 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00064
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                 ++lyGp+g GK+++a+ La++    +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYF 317
                 689***************99877655 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 6.7e-05
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklk 27 
                 +++yGp+g+GK++la+ +ak+   ++ 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFV 603
                 689**************9999887663 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00026     0.063      49      70 ..     291     312 ..     286     366 .. 0.89
   2 !   12.7   0.0   0.00024     0.057      48      70 ..     575     597 ..     571     606 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00026
  PF01695.12  49 nlvllGpsGvGKthlAialgve 70 
                  ++l Gp+G GKt +A al+ e
  MMETSP0890-20130614|5805_1 291 GVLLYGPPGSGKTSIARALAEE 312
                 689****************976 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00024
  PF01695.12  48 enlvllGpsGvGKthlAialgve 70 
                 + +++ Gp+G GKt lA a++ e
  MMETSP0890-20130614|5805_1 575 RGVLFYGPPGCGKTLLAQAVAKE 597
                 57899**************9976 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00038      0.09      24      43 ..     291     310 ..     283     315 .. 0.86
   2 !   12.9   0.0   0.00017     0.041      25      42 ..     577     594 ..     573     598 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00038
  PF01078.16  24 nlllvGppGsGKtmlakrlp 43 
                  +ll+GppGsGKt +a++l+
  MMETSP0890-20130614|5805_1 291 GVLLYGPPGSGKTSIARALA 310
                 68**************9986 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00017
  PF01078.16  25 lllvGppGsGKtmlakrl 42 
                 +l++GppG+GKt+la+++
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAV 594
                 89*************987 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0031      0.75       3      23 ..     292     312 ..     290     315 .. 0.89
   2 ?    1.5   0.0      0.72   1.7e+02      77     129 ..     344     405 ..     322     425 .. 0.63
   3 !   10.7   0.0    0.0011      0.27       3      23 ..     577     597 ..     575     603 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0031
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 v+l G++GsGKT  ++ la++
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEE 312
                 899*************99976 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.72
   PF05729.7  77 lelperlLlilDglDelvsdlgq.........lkekqpvrtlLselirkkllpeasllltvr 129
                 ++    + +++D lD l+   ++            ++++ +lL el    + ++a ++l+++
  MMETSP0890-20130614|5805_1 344 ARKHAPAIIFIDELDALAPRRDAkaqasggeeQRAARALCDLLDELADDMSSTSAVVVLAAT 405
                 34444556889****99998888889997765555556667777777775555555544443 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.0011
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 v+  G++G+GKT L+q +a++
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKE 597
                 7889*************9986 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0035      0.85       5      69 ..     296     359 ..     292     370 .. 0.68
   2 !   13.9   0.0   0.00011     0.027       5      67 ..     581     642 ..     577     646 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0035
  PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEyll 69 
                 G pG+GK+++ r l+++    + v++  ae++++   +++++  + ++++ +++      i+++DE  +
  MMETSP0890-20130614|5805_1 296 GPPGSGKTSIARALAEEtgayFFVING-AEILSKTPGEAEANLRKAFEQARKHA----PAIIFIDELDA 359
                 88*************997777555555.66666655444444344444444443....57999999755 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 0.00011
  PF01443.13   5 GvpGcGKStlirkllrt....ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEy 67 
                 G pGcGK+ l + ++++    +++++   el+t+++ +++++    + ++  ++ +    il++DE+
  MMETSP0890-20130614|5805_1 581 GPPGCGKTLLAQAVAKEcganFVSIKG-PELLTMWFGESEANVRDLFAKARTSAPC----ILFFDEI 642
                 78*******************889999.9*******88777766666666666554....8999997 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00016     0.039       6      24 ..     292     311 ..     290     318 .. 0.87
   2 !    8.8   0.0     0.004      0.96       6      22 ..     577     593 ..     575     598 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00016
   PF13479.1   6 vliYGkpGiGKTslaktl.p 24 
                 vl+YG+pG+GKTs a+ l +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALaE 311
                 79************998754 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.004
   PF13479.1   6 vliYGkpGiGKTslakt 22 
                 vl YG+pG GKT la  
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQA 593
                 789*********99976 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   0.00023     0.055       9      32 ..     289     310 ..     282     327 .. 0.75
   2 !   10.1   0.0     0.002      0.47      16      33 ..     580     596 ..     571     606 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00023
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiia 32 
                 ++++l + G+PG+GKT  +a++ a
  MMETSP0890-20130614|5805_1 289 PRGVL-LYGPPGSGKT-SIARALA 310
                 35555.5*********.6666555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.002
   PF13245.1  16 tGgPGtGKTttlaaiiaa 33 
                  G+PG GKT +la+++a 
  MMETSP0890-20130614|5805_1 580 YGPPGCGKT-LLAQAVAK 596
                 6********.77777775 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.001      0.25     117     141 ..     292     316 ..     287     323 .. 0.87
   2 !   10.7   0.0   0.00064      0.15     117     137 ..     577     597 ..     572     601 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.001
  PF01057.12 117 vwfyGpantGktnlaeaIakavply 141
                 v++yGp+  Gkt +a+a+a+ +  y
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAY 316
                 89*****************988777 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00064
  PF01057.12 117 vwfyGpantGktnlaeaIaka 137
                 v+fyGp+ +Gkt la+a ak 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKE 597
                 89****************986 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00024     0.059      23      83 ..     292     358 ..     287     403 .. 0.61
   2 ?    7.1   0.0     0.015       3.5      23      43 ..     577     597 ..     572     608 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00024
                 EEEE--TT---HHHHHHHHHH-..---HHHHH------HHHHHHHH....HHHS-SHHHH............H CS
  PF01637.13  23 iviyGprrsGKTaLlkeileelkekgkrvvyyinlreefeskleefieeeeekkklakal............g 83 
                 +++yGp +sGKT++ + ++ee+   g   +++in  e+  ++  e   e + +k +++a              
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEET---G-AYFFVINGAEILSKTPGEA--EANLRKAFEQARkhapaiifidelD 358
                 799******************9...3.4578888888888777777..3333333333333333334555541 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.015
                 EEEE--TT---HHHHHHHHHH CS
  PF01637.13  23 iviyGprrsGKTaLlkeilee 43 
                 ++ yGp ++GKT L + +++e
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKE 597
                 678*********999988877 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0021       0.5       1      21 [.     298     318 ..     298     333 .. 0.92
   2 !    8.0   0.0    0.0092       2.2       1      22 [.     583     604 ..     583     616 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0021
                 -----HHHHHHHHHHT--EEE CS
  PF01202.17   1 mGaGKstvGkllAkalglefi 21 
                 +G+GK++++++lA++ g  f+
  MMETSP0890-20130614|5805_1 298 PGSGKTSIARALAEETGAYFF 318
                 7**************999886 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0092
                 -----HHHHHHHHHHT--EEEE CS
  PF01202.17   1 mGaGKstvGkllAkalglefiD 22 
                 +G+GK+ +++++Ak+ g +f+ 
  MMETSP0890-20130614|5805_1 583 PGCGKTLLAQAVAKECGANFVS 604
                 7*****************9985 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.046        11      14      37 ..     284     307 ..     271     368 .. 0.91
   2 !   11.4   0.0   0.00045      0.11       9      38 ..     564     593 ..     557     603 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.046
   PF06745.8  14 gGipegrvvlitGepGtGKtifal 37 
                  Gi   r vl++G pG+GKt +a 
  MMETSP0890-20130614|5805_1 284 VGIAPPRGVLLYGPPGSGKTSIAR 307
                 58888899************8875 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00045
   PF06745.8   9 DellkgGipegrvvlitGepGtGKtifalq 38 
                 D+  k G+p  r vl +G pG+GKt++a+ 
  MMETSP0890-20130614|5805_1 564 DKYRKFGLPPSRGVLFYGPPGCGKTLLAQA 593
                 5666779********************985 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0     0.002      0.48       8      56 ..     298     346 ..     292     404 .. 0.65
   2 ?    6.2   0.0     0.032       7.6       8      49 ..     583     624 ..     579     659 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.002
   PF13189.1   8 yGSgGreigekLaeklgipyydkeileeaakesgiseeevekydekass 56 
                  GSg++ i+++Lae+ g  ++  +  e ++k  g  e+ ++k+ e+a +
  MMETSP0890-20130614|5805_1 298 PGSGKTSIARALAEETGAYFFVINGAEILSKTPGEAEANLRKAFEQARK 346
                 7****************99987777777777777777777666666553 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.032
   PF13189.1   8 yGSgGreigekLaeklgipyydkeileeaakesgiseeevek 49 
                  G+g++ +++++a++ g ++++ +  e +   +g se+ v++
  MMETSP0890-20130614|5805_1 583 PGCGKTLLAQAVAKECGANFVSIKGPELLTMWFGESEANVRD 624
                 6*******************9987777777777777666655 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.013         3       2      27 ..     292     317 ..     291     331 .. 0.89
   2 !    8.3   0.0     0.006       1.4       2      31 ..     577     606 ..     576     613 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.013
   PF07726.6   2 vllegvPGlaktllvkalakaldlef 27 
                 vll g PG +kt +++ala+  ++ f
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYF 317
                 7999***************9998877 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.006
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vl+ g PG +ktll++a+ak  +++f  i+
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSIK 606
                 788999*****************9998775 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0051       1.2      24      61 ..     291     325 ..     283     367 .. 0.84
   2 ?    6.1   0.0     0.026       6.2      24      46 ..     576     598 ..     565     611 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0051
                 -EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS CS
  PF00158.21  24 tvlitGesGtGKellAraiheaskrkkkpfvavncaai 61 
                  vl+ G  G+GK+ +Ara+ e++    + f  +n a+i
  MMETSP0890-20130614|5805_1 291 GVLLYGPPGSGKTSIARALAEET---GAYFFVINGAEI 325
                 69****************97654...466777777765 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.026
                 -EEEE-------HHHHHHHHHTS CS
  PF00158.21  24 tvlitGesGtGKellAraiheas 46 
                  vl  G  G+GK+llA+a+ ++ 
  MMETSP0890-20130614|5805_1 576 GVLFYGPPGCGKTLLAQAVAKEC 598
                 599**************997754 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0039      0.93      18      40 ..     292     314 ..     286     321 .. 0.89
   2 ?    6.0   0.0     0.032       7.8      16      46 ..     575     606 ..     568     613 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0039
  PF02367.12  18 vlLsGdlGaGKTtlvkglakglg 40 
                 vlL G+ G+GKT+++++la++ g
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETG 314
                 89*****************9876 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.032
  PF02367.12  16 dvvlLsGdlGaGKTtlvkglakglgvkg.evt 46 
                 + vl  G+ G GKT l++++ak+ g +  +++
  MMETSP0890-20130614|5805_1 575 RGVLFYGPPGCGKTLLAQAVAKECGANFvSIK 606
                 558899****************9988654555 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.039       9.3      22      40 ..     292     310 ..     289     316 .. 0.86
   2 !    9.4   0.0    0.0016      0.38      22      42 ..     577     597 ..     572     606 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.039
                 EEEE-------HHHHHHHT CS
  PF00931.17  22 vglvGmgGvGKttlakqvy 40 
                 v l+G +G+GKt +a++  
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALA 310
                 679************9865 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0016
                 EEEE-------HHHHHHHTS- CS
  PF00931.17  22 vglvGmgGvGKttlakqvykd 42 
                 v ++G +G+GKt la++v k+
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKE 597
                 678***************987 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0021      0.51      23      39 ..     293     309 ..     289     312 .. 0.93
   2 ?    4.6   0.0      0.14        33      22      39 ..     577     594 ..     564     595 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0021
   PF13476.1  23 lItGpNGsGKTTildAi 39 
                 l++Gp GsGKT+i  A+
  MMETSP0890-20130614|5805_1 293 LLYGPPGSGKTSIARAL 309
                 89************997 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.14
   PF13476.1  22 tlItGpNGsGKTTildAi 39 
                 +l++Gp G+GKT + +A 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAV 594
                 59**********999985 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.019       4.6      48      76 ..     292     320 ..     287     367 .. 0.79
   2 !    8.0   0.0    0.0039      0.95      48      83 ..     577     612 ..     572     645 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.019
  PF03215.10  48 llltGPsGcgKsTtvkvlskelgikliew 76 
                 +ll GP+G+gK+ + + l+ e g  +   
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYFFVI 320
                 5899****************998765544 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0039
  PF03215.10  48 llltGPsGcgKsTtvkvlskelgikliewlnpvslk 83 
                 +l  GP+GcgK+   + ++ke g ++     p++l 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSIKGPELLT 612
                 5778*******************9998887777764 PP

>> PF01745.11  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0     0.003      0.73       5      29 ..     293     317 ..     290     329 .. 0.89
   2 ?    5.1   0.0     0.042        10       5      31 ..     578     604 ..     575     606 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.003
  PF01745.11   5 lifGatttGKtaeaiklaketgapv 29 
                 l++G+ ++GKt+ a +la+etga  
  MMETSP0890-20130614|5805_1 293 LLYGPPGSGKTSIARALAEETGAYF 317
                 89********************865 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.042
  PF01745.11   5 lifGatttGKtaeaiklaketgapviv 31 
                 l +G+ + GKt  a ++ake ga  ++
  MMETSP0890-20130614|5805_1 578 LFYGPPGCGKTLLAQAVAKECGANFVS 604
                 789*******************99887 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0      0.01       2.4       4      46 ..     292     332 ..     290     359 .. 0.77
   2 ?    6.5   0.0     0.019       4.6       4      24 ..     577     597 ..     574     600 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.01
   PF10662.4   4 illiGkvgaGKTtLtqalkgeelkykkTQaielseeviDtPGe 46 
                 +ll G+ g+GKT++++al +e+  y     i+  e +  tPGe
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYF--FVINGAEILSKTPGE 332
                 899****************9988875..345555555556665 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.019
   PF10662.4   4 illiGkvgaGKTtLtqalkge 24 
                 +l+ G+ g+GKT L+qa+ +e
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKE 597
                 899**************9875 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0019      0.46      52      80 ..     288     316 ..     249     367 .. 0.78
   2 ?    4.2   0.0     0.067        16      52      80 ..     573     601 ..     526     640 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0019
   PF05673.8  52 pannvLLwGarGtGKSslvkallneyaee 80 
                 p + vLL+G  G+GK s+ +al +e+ + 
  MMETSP0890-20130614|5805_1 288 PPRGVLLYGPPGSGKTSIARALAEETGAY 316
                 55679*****************9997665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.067
   PF05673.8  52 pannvLLwGarGtGKSslvkallneyaee 80 
                 p++ vL++G  G+GK  l +a+ +e+ ++
  MMETSP0890-20130614|5805_1 573 PSRGVLFYGPPGCGKTLLAQAVAKECGAN 601
                 5778******************9998765 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0053       1.3       4      26 ..     292     314 ..     290     327 .. 0.85
   2 ?   -1.6   0.0       4.6   1.1e+03     234     256 ..     338     360 ..     328     425 .. 0.66
   3 ?    4.3   0.0     0.073        18       4      22 ..     577     595 ..     574     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0053
   PF12846.2   4 tlilGppGsGKSvllkklvlqll 26 
                 +l++GppGsGK++ +++l+++  
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETG 314
                 6899************9987765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 4.6
   PF12846.2 234 rrnfrapkdlrdkllviDEahrl 256
                 r++f++ ++ ++ +++iDE+  l
  MMETSP0890-20130614|5805_1 338 RKAFEQARKHAPAIIFIDELDAL 360
                 55555555555566666665443 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.073
   PF12846.2   4 tlilGppGsGKSvllkklv 22 
                 +l++GppG+GK+ l+ +++
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVA 595
                 799*********9998875 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.073        18      22      40 ..     292     310 ..     286     316 .. 0.88
   2 ?    7.8   0.0    0.0063       1.5      22      41 ..     577     596 ..     571     603 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.073
  PF02562.11  22 vfaiGpaGtGKTylavala 40 
                 v++ Gp G+GKT +a ala
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALA 310
                 6789***********9988 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0063
  PF02562.11  22 vfaiGpaGtGKTylavalav 41 
                 v+  Gp G+GKT+la a+a 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAK 596
                 6778***********99985 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0039      0.94      24      70 ..     288     333 ..     261     378 .. 0.73
   2 ?    3.8   0.0      0.17        41      26      54 ..     575     603 ..     525     611 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0039
  PF04851.10  24 ekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleef 70 
                   + +l+  + G+GKT +a + +a+     +f++++ e+l+++  e 
  MMETSP0890-20130614|5805_1 288 PPRGVLLYGPPGSGKTSIARA-LAEETGAYFFVINGAEILSKTPGEA 333
                 5677889999**********6.666666999**********998777 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.17
  PF04851.10  26 krglivmaTGtGKTlvaasliarlarkfl 54 
                 + +l+  + G+GKTl+a ++++++  +f+
  MMETSP0890-20130614|5805_1 575 RGVLFYGPPGCGKTLLAQAVAKECGANFV 603
                 56789999*********999888887776 PP

>> PF07931.7  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00068      0.16       4      32 ..     292     320 ..     290     348 .. 0.88
   2 ?    1.0   0.0       1.1   2.6e+02       4      41 ..     577     614 ..     574     671 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00068
                 EEE-----------HHHHHHHSSS-EEEE CS
   PF07931.7   4 ilLnGgsssGKsslaralqevldepwlhl 32 
                 +lL G + sGK+s+aral e + + ++ +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAYFFVI 320
                 89****************99988888766 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 1.1
                 EEE-----------HHHHHHHSSS-EEEE--HHHHHHS CS
   PF07931.7   4 ilLnGgsssGKsslaralqevldepwlhlgvDafveal 41 
                 +l  G +  GK+ la+a+ +   + ++ ++  +++ + 
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANFVSIKGPELLTMW 614
                 7889999***********99999999888766666655 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.11        27       2      23 ..     292     313 ..     291     325 .. 0.82
   2 ?    7.2   0.0     0.014       3.4       6      32 ..     581     607 ..     577     612 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.11
                 EEEE-------HHHHHHHHHH- CS
  PF03266.10   2 vfiTGepgvGKtTlvkkvlell 23 
                 v++ G+pg+GKt + + ++e+ 
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEET 313
                 5788**********99999876 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.014
                 -------HHHHHHHHHH-...---EE- CS
  PF03266.10   6 GepgvGKtTlvkkvlellksegvkvgG 32 
                 G+pg GKt l + v++++ ++ v+++G
  MMETSP0890-20130614|5805_1 581 GPPGCGKTLLAQAVAKECGANFVSIKG 607
                 9*****************999999998 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0011      0.27       2      51 ..     292     355 ..     291     405 .. 0.63
   2 ?    0.8   0.0       1.7   4.1e+02       2      21 ..     577     596 ..     576     612 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0011
                 EEEE--TT---HHHHHHHHCST.........CTEETS-TT-SSSESEEEEETTE.....EEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek.........aakvsdypgtTrditenevkkek.....iilvD 51 
                 v ++G p +GK+++ +aL +e+         a + s++pg+ +   ++++++ +     ii++D
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETgayffvingAEILSKTPGEAEANLRKAFEQARkhapaIIFID 355
                 7899**************8422222222222444555555544443333322222233333333 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 1.7
                 EEEE--TT---HHHHHHHHC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg 21 
                 v ++G p +GK+ L  a  +
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAK 596
                 6899********99998874 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0028      0.66       4      24 ..     292     312 ..     291     347 .. 0.83
   2 ?    2.2   0.0      0.32        76       4      24 ..     577     597 ..     576     611 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0028
   PF08433.5   4 vvltGlPssGKstvakeLaka 24 
                 v+l G P sGK+ +a+ La++
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEE 312
                 799***************986 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.32
   PF08433.5   4 vvltGlPssGKstvakeLaka 24 
                 v++ G P  GK+ +a+  ak+
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKE 597
                 799*************99987 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0041      0.99      21      42 ..     289     308 ..     281     311 .. 0.82
   2 ?    2.9   0.0      0.28        68      22      42 ..     574     593 ..     564     596 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0041
   PF13555.1  21 pkgkntlltGasGsGKSTllDA 42 
                 p+g  +ll G+ GsGK+++  A
  MMETSP0890-20130614|5805_1 289 PRG--VLLYGPPGSGKTSIARA 308
                 455..9***********99766 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.28
   PF13555.1  22 kgkntlltGasGsGKSTllDA 42 
                 +   +l+ G+ G GK+ l  A
  MMETSP0890-20130614|5805_1 574 SR-GVLFYGPPGCGKTLLAQA 593
                 33.59**********877666 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.3        73      15      31 ..     290     306 ..     278     313 .. 0.85
   2 ?    4.8   0.0     0.063        15      97     138 ..     320     363 ..     305     411 .. 0.64
   3 ?    1.1   0.0      0.89   2.1e+02      15      33 ..     575     593 ..     568     601 .. 0.83
   4 ?   -0.8   0.0       3.3     8e+02     125     167 ..     635     688 ..     607     694 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.3
                 -EEEEEC-TT---HHHH CS
                 xxxxxxxxxxxxxxxxx RF
  PF00270.24  15 gdvlvaaeTGsGKTlaf 31 
                 + vl+ ++ GsGKT ++
  MMETSP0890-20130614|5805_1 290 RGVLLYGPPGSGKTSIA 306
                 67999*********987 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.063
                 T..-SEEEEEHHHHHHHHHHCCH.HTTT.EEEEEECTHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxx RF
  PF00270.24  97 dngvdivvgTpgrlddlvstgkl.nlsq.vrllVlDEadrllsq 138
                  ng++i+  Tpg     +++      ++   ++ +DE d l   
  MMETSP0890-20130614|5805_1 320 INGAEILSKTPGEAEANLRKAFEqARKHaPAIIFIDELDALAPR 363
                 578****************9544366777889999*****9883 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.89
                 -EEEEEC-TT---HHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
  PF00270.24  15 gdvlvaaeTGsGKTlafli 33 
                 + vl  ++ G GKTl ++ 
  MMETSP0890-20130614|5805_1 575 RGVLFYGPPGCGKTLLAQA 593
                 6799999********9875 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 3.3
                 EEEEECTHHHHHCT.TTHH..........HHHHHHHHSHHT.TTSEEEEEESS-T CS
                 xxxxxxxxxxxxxx.xxxx..........xxxxxxxxxxxx.xxxxxxxxxxxxx RF
  PF00270.24 125 rllVlDEadrllsq.gfsd..........qlnqilqilcdg.krlqvivlSATlp 167
                  +l +DE+d + +q g +            +nqil  ++    r  v v+ AT  
  MMETSP0890-20130614|5805_1 635 CILFFDEIDAIAKQrG-GGsggaseagdrVINQILTEIDGVgVRKDVFVIGATNR 688
                 56789****9999752.22355666777778887777644423344788777766 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.011       2.6      21      47 ..     292     323 ..     283     344 .. 0.74
   2 ?    3.5   0.0      0.17        41      21      45 ..     577     601 ..     567     609 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.011
   PF13604.1  21 avvqGpAGtGKttvlkalrealea.....agk 47 
                 +++ Gp+G+GKt++ +al+e   a     +g 
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETGAyffviNGA 323
                 5677*************999766655555555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.17
   PF13604.1  21 avvqGpAGtGKttvlkalrealeaa 45 
                 ++  Gp+G GKt + +a+++ + a+
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGAN 601
                 5667**************9987765 PP

>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0068       1.6       3      32 ..     290     319 ..     289     336 .. 0.89
   2 ?    1.0   0.0      0.89   2.1e+02       4      31 ..     576     603 ..     574     607 .. 0.85
   3 ?   -1.7   0.0       6.1   1.5e+03      78     103 ..     614     643 ..     611     648 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0068
                 -EEEEE------HHHHHHHHHHH-TTTEE- CS
  PF00625.16   3 rpivlvGpsgvGkstlkkaLldelpekfgi 32 
                 r + l Gp g+Gk++++ aL +e   +f++
  MMETSP0890-20130614|5805_1 290 RGVLLYGPPGSGKTSIARALAEETGAYFFV 319
                 56899******************9999975 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.89
                 EEEEE------HHHHHHHHHHH-TTTEE CS
  PF00625.16   4 pivlvGpsgvGkstlkkaLldelpekfg 31 
                  +   Gp g Gk+ l++a+ +e   +f+
  MMETSP0890-20130614|5805_1 576 GVLFYGPPGCGKTLLAQAVAKECGANFV 603
                 57789**************999888875 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 6.1
                 ----BHHHHHHHHHTT-E...EEEE--.CC CS
  PF00625.16  78 lygtskeaveeiaesgki...viLDvd.iq 103
                  +g+s+++v+  ++++++   +iL  d i+
  MMETSP0890-20130614|5805_1 614 WFGESEANVRDLFAKARTsapCILFFDeID 643
                 59***************9888888666555 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0035      0.83       3      20 ..     293     310 ..     292     334 .. 0.80
   2 ?    1.4   0.0      0.98   2.3e+02       3      20 ..     578     595 ..     577     617 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0035
   PF13304.1   3 viiGpNgsGKSnlLkald 20 
                 +++Gp gsGK+++ +al+
  MMETSP0890-20130614|5805_1 293 LLYGPPGSGKTSIARALA 310
                 69***************6 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.98
   PF13304.1   3 viiGpNgsGKSnlLkald 20 
                 +++Gp g+GK+ l +a +
  MMETSP0890-20130614|5805_1 578 LFYGPPGCGKTLLAQAVA 595
                 69***********99986 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.4   3.4e+02      37      58 ..     292     313 ..     288     327 .. 0.89
   2 ?    2.0   0.0      0.52   1.3e+02     131     197 ..     398     460 ..     370     473 .. 0.70
   3 ?    6.0   0.0      0.03       7.1      37      62 ..     577     602 ..     573     612 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.4
                 EEEE-------HHHHHH---HH CS
  PF00308.13  37 lfiygevGlGKtHLLqaignev 58 
                 +++yg  G GKt + +a++ e+
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEET 313
                 79************99998775 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.52
                 -EEEEE-SS-TTT-SS--HHHHHHHH---EEE-----HHHHHHHHHHHHHHH-----TTHHHHHHHH CS
  PF00308.13 131 kqivlssDraPkeleeledrlrsrfeaGlvveiekpdletrlailekkleeenleipeevlefiaqr 197
                   +vl++   P+   ++++ lr   +    v++  pd   rl+il+ k ++++l+i  + le ia++
  MMETSP0890-20130614|5805_1 398 AVVVLAATNRPN---GIDASLRRFGRLDREVDVGVPDALARLDILRVKTRKARLNIDVD-LETIAKN 460
                 456777777775...45566654334455788889******************998776.4556655 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.03
                 EEEE-------HHHHHH---HHHHHS CS
  PF00308.13  37 lfiygevGlGKtHLLqaignevlena 62 
                 +++yg  G GKt L qa+++e  +n+
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQAVAKECGANF 602
                 789****************9987766 PP

>> PF01568.16  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00058      0.14      30      65 ..      79     114 ..      62     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00058
                 -EEEEHHHHHH-------EEEEEESSEEEEEEEEEE CS
  PF01568.16  30 vveinpedaaalgikdGdlVevesrrGsvvvkakvt 65 
                  + +++e++++l + +Gd V+v+  rG+ ++  +vt
  MMETSP0890-20130614|5805_1  79 EIGLSEEKMEELALFEGDVVRVTGHRGRWTLCTAVT 114
                 68899***********************99877776 PP

>> PF00154.16  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.8     0.065        16     105     185 ..     322     402 ..     272     409 .. 0.72
   2 ?    1.9   0.0      0.35        83      49      75 ..     570     596 ..     565     604 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.065
                 GGG-EEE------HHHHHHHHHHT----SEEEEE-TTT---STT------------HHHHHHHHHHHHHHHHTT---EEEE CS
  PF00154.16 105 idellvsqPdtGeqaleiadalvrsgavdlivvdsvaalvPkaeieGemgdshvglqarlmsqalrkltgsisksntlvif 185
                   e+l   P + e  l  a   +r  a  +i +d + al P+ + + + +  +    ar + + l +l+  +s + ++v++
  MMETSP0890-20130614|5805_1 322 GAEILSKTPGEAEANLRKAFEQARKHAPAIIFIDELDALAPRRDAKAQASGGEEQRAARALCDLLDELADDMSSTSAVVVL 402
                 445555667777777777777777777778888888888888888888877777778888888888888777777777765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.35
                 --B---EEEEE-------HHHHHHHHH CS
  PF00154.16  49 GlPkGriieiyGpessGkttlalhaia 75 
                 GlP  r +  yGp   Gkt la  +  
  MMETSP0890-20130614|5805_1 570 GLPPSRGVLFYGPPGCGKTLLAQAVAK 596
                 8999***************99866544 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.017       4.1       4      33 ..     293     320 ..     291     326 .. 0.76
   2 ?    2.7   0.0      0.28        67       4      23 ..     578     597 ..     576     605 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.017
                 EEE-------HHHHHHHHCHS---S-EEEE CS
  PF02492.14   4 vltGflGsGKTtLleklleknreglkiaVi 33 
                  l G++GsGKT++ ++l e  + g  + Vi
  MMETSP0890-20130614|5805_1 293 LLYGPPGSGKTSIARALAE--ETGAYFFVI 320
                 689*********9998883..345555555 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.28
                 EEE-------HHHHHHHHCH CS
  PF02492.14   4 vltGflGsGKTtLlekllek 23 
                  + G++G GKT L +++ ++
  MMETSP0890-20130614|5805_1 578 LFYGPPGCGKTLLAQAVAKE 597
                 578********998887754 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.023       5.6      20      42 ..     292     347 ..     276     472 .. 0.63
   2 ?    3.1   0.0      0.23        54      20      36 ..     577     593 ..     567     650 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.023
   PF13086.1  20 tliqGpPgtGKtttivelisql.................................l 42 
                  l+ GpPg+GKt+   +l  +                                  +
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEETgayffvingaeilsktpgeaeanlrkafeqarkH 347
                 699*********88777777665556665555555555555555555554444440 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.23
   PF13086.1  20 tliqGpPgtGKtttive 36 
                  l  GpPg+GKt    +
  MMETSP0890-20130614|5805_1 577 VLFYGPPGCGKTLLAQA 593
                 6899********44333 PP

>> PF07693.9  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.13        30      18      43 ..     287     312 ..     265     321 .. 0.83
   2 ?    4.6   0.0     0.049        12     156     187 ..     333     363 ..     318     367 .. 0.69
   3 ?   -2.7   0.0       8.4     2e+03      25      44 ..     579     598 ..     574     645 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.13
   PF07693.9  18 atpiviglyGkWGsGKssllnllede 43 
                 a+p  + lyG+ GsGK+s+   l +e
  MMETSP0890-20130614|5805_1 287 APPRGVLLYGPPGSGKTSIARALAEE 312
                 6677799***********98877665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.049
   PF07693.9 156 veelradiekkLda..lqkrlVvviDdLDRcepe 187
                 +e   a++ k++++  ++ + +++iD+LD + p 
  MMETSP0890-20130614|5805_1 333 AE---ANLRKAFEQarKHAPAIIFIDELDALAPR 363
                 33...3333444445569***********98775 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 8.4
   PF07693.9  25 lyGkWGsGKssllnlledel 44 
                  yG+ G+GK+ l + + +e 
  MMETSP0890-20130614|5805_1 579 FYGPPGCGKTLLAQAVAKEC 598
                 588889****9988887775 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.08        19       4      25 ..     292     313 ..     289     357 .. 0.82
   2 ?    5.0   0.0     0.037       8.8       5      25 ..     578     598 ..     574     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.08
   PF09848.4   4 ilvtGvaGtGKtvvalnllael 25 
                 +l  G +G+GKt +a +l+ e 
  MMETSP0890-20130614|5805_1 292 VLLYGPPGSGKTSIARALAEET 313
                 6778***********9999886 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.037
   PF09848.4   5 lvtGvaGtGKtvvalnllael 25 
                 l  G +G GKt++a ++++e+
  MMETSP0890-20130614|5805_1 578 LFYGPPGCGKTLLAQAVAKEC 598
                 6689*************9998 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0078       1.9      20      38 ..     293     311 ..     288     317 .. 0.89
   2 ?    0.9   0.0      0.43     1e+02      20      38 ..     578     596 ..     566     603 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0078
   PF13166.1  20 lIYGrNGsGKtTlSrllrs 38 
                 l+YG+ GsGKt+++r l++
  MMETSP0890-20130614|5805_1 293 LLYGPPGSGKTSIARALAE 311
                 79**************997 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.43
   PF13166.1  20 lIYGrNGsGKtTlSrllrs 38 
                 l+YG+ G+GKt l++  ++
  MMETSP0890-20130614|5805_1 578 LFYGPPGCGKTLLAQAVAK 596
                 8**********99987765 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.8   1.6e+03     178     199 ..      65      86 ..      60      89 .. 0.85
   2 ?    1.7   0.0      0.57   1.4e+02      19      46 ..     293     320 ..     289     414 .. 0.74
   3 ?    6.0   0.0     0.028       6.7      19      44 ..     578     603 ..     574     689 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 6.8
                 xxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20 178 sdpvttstlgitdvfivLdkkl 199
                 ++ ++t+t g+ d++i+L+++ 
  MMETSP0890-20130614|5805_1  65 KALIVTETNGVNDGEIGLSEEK 86 
                 56899*************9875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.57
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  19 lipGafgcGktvisqslsknsnsdaiiy 46 
                 l+ G++g Gkt+i+  l++++ +  +++
  MMETSP0890-20130614|5805_1 293 LLYGPPGSGKTSIARALAEETGAYFFVI 320
                 789*************999876555544 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.028
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  19 lipGafgcGktvisqslsknsnsdai 44 
                 l  G++gcGkt ++q ++k+  ++ +
  MMETSP0890-20130614|5805_1 578 LFYGPPGCGKTLLAQAVAKECGANFV 603
                 5679***************9866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        57  (0.0041691); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.64u 0.41s 00:00:02.04 Elapsed: 00:00:01.46
# Mc/sec: 1396.78
//
Query:       MMETSP0890-20130614|5812_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   89.3   0.1    2.3e-25   88.3   0.0    1.5  1  PF02847.12 MA3 domain
  ------ inclusion threshold ------
      0.011   15.6   0.4       0.12   12.2   0.0    2.5  3  PF01877.12 Protein of unknown function DUF54


Domain annotation for each model (and alignments):
>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   3.3e-29   2.3e-25       1     113 []     161     267 ..     161     267 .. 0.99

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 3.3e-29
  PF02847.12   1 lkrkiflileeylssgdyeeavskleeLklp.kqhheivkillecaleekktyneyyalLlsklceknlisskqfekgfsrvlesledleldipeairnlaeflarliaedilp 113
                 l+r+i+l++++++    +ee+++k+ +L lp   + e++k+++ec+ +e +ty +yy+lL +++c  +l ++ +f ++fs+ ++++++le++   ++rn+a+f+a+l ++d+lp
  MMETSP0890-20130614|5812_1 161 LRRTIYLTIMSSV---GFEECAHKIAKLDLPqGAEIEVCKMIIECCSQE-RTYLRYYGLLGQRFCLLHLPWQYAFIQCFSEQYTMIHRLETN---KLRNVAKFFAHLFSTDALP 267
                 69***********...*********************************.******************************************...****************997 PP

>> PF01877.12  Protein of unknown function DUF54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.12       5      27 ..      15      46 ..      14     102 .. 0.62
   2 ?   -3.0   0.0      0.91   6.2e+03      46      71 ..     240     264 ..     235     267 .. 0.72
   3 ?    0.6   0.0     0.073     5e+02      46      94 ..     286     335 ..     246     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
                EEEEE-TTB-HHHHHHHHHCCT.........C CS
  PF01877.12  5 vrvivhaTEdeekVleAlenlf.........e 27
                +r+i+h+ E +++V  A+enlf          
  MMETSP0890-20130614|5812_1 15 FRAILHDGEIDKRVQYAIENLFsirkdkfahY 46
                699*******************6654333221 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.91
                 EEEEEEEECHHHHHHHHHHHHHHHHT CS
  PF01877.12  46 tilevrlerkeakksleklrellree 71 
                 t++  rle ++ ++++++++ l++ +
  MMETSP0890-20130614|5812_1 240 TMIH-RLETNKLRNVAKFFAHLFSTD 264
                 4444.888889999999999888765 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.073
                 EEEEEEEECH.HHHHHHHHHHHHHHHTCHHHHHHHHHHHCB-TSEEEEEE CS
  PF01877.12  46 tilevrlerk.eakksleklrellreeeildtarselekrlegnklylrl 94 
                  i+   l ++ +++  l++l++++++ ++ dt+ s ++ +l+   + +++
  MMETSP0890-20130614|5812_1 286 RIFIKILCQElAERLGLHSLKKRFQDPNMSDTFASLFPMGLNVRDTRFSI 335
                 34455666777999999999999999999999999999999855555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1090  (0.079725); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                       133  (0.00972791); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.19u 0.40s 00:00:01.59 Elapsed: 00:00:01.07
# Mc/sec: 1016.77
//
Query:       MMETSP0890-20130614|5820_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-15   57.3   0.0    2.3e-15   57.1   0.0    1.1  1  PF00929.19 Exonuclease
  ------ inclusion threshold ------
       0.15   11.7   0.1       0.34   10.6   0.0    1.6  2  PF09961.4  Uncharacterized protein conserved in bacteria (DUF2195)


Domain annotation for each model (and alignments):
>> PF00929.19  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   3.4e-19   2.3e-15       1     112 [.      10     137 ..      10     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 3.4e-19
                 EEEEEEE----T.......TT--EEEEEEEEEETTEE..........EEEEEEEEEE-SSS.S--HHHHHH----HHHHTTSEEHHHHHHHHHHHHCHS-EEEETSHHHHCCHHHHHHHHCTTS-TT....E CS
  PF00929.19   1 vviDcEttglda.......ekdeiieiaavsivggee.........eigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklemp....k 112
                 vv+D+E+t+ +           eiie++a+ i+ + e         +  ++f++yv+p e +k+t ++t++tgi+qe +dka+s + vl +++++l+k +   + n  +++  +  d++ fl  e+     +
  MMETSP0890-20130614|5820_1  10 VVVDFECTCESSkksqndwI-YEIIEFPAILIDLQVEikeessrkqHNRPVFHEYVRPIEQPKLTQFCTNLTGISQEIVDKADSLDRVLLRFQDWLDKYTN--GEN-YAFAADAPSDFRFFLLAECYrkrlQ 137
                 89*********988855541.37**********9999999*********************************************************5433..333.5677777777777776666665553 PP

>> PF09961.4  Uncharacterized protein conserved in bacteria (DUF2195)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3      0.92   6.3e+03      58      63 ..      15      20 ..      14      22 .. 0.87
   2 ?   10.6   0.0   4.9e-05      0.34      25      60 ..     127     162 ..     108     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.92
   PF09961.4 58 eCgCmS 63
                eC+C S
  MMETSP0890-20130614|5820_1 15 ECTCES 20
                8***98 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4.9e-05
   PF09961.4  25 kLaaCvdlrpgkrqvaenlvalkadlelrksiGeCg 60 
                  La+C + r++ +++a   + l ++l++   iG+C 
  MMETSP0890-20130614|5820_1 127 LLAECYRKRLQPPRNARSWIDLSLHLKAYYNIGKCN 162
                 59*********************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.49s 00:00:00.88 Elapsed: 00:00:00.90
# Mc/sec: 481.93
//
Query:       MMETSP0890-20130614|5821_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.2   2.2      2e-07   30.5   1.5    1.4  1  PF13639.1  Ring finger domain
    0.00034   20.2   0.5    0.00064   19.3   0.4    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0019   18.1   0.8     0.0038   17.2   0.5    1.5  1  PF12678.2  RING-H2 zinc finger
     0.0074   15.8   1.5     0.0074   15.8   1.0    2.0  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.018   14.9   4.1      0.028   14.2   2.5    1.6  1  PF13801.1  Heavy-metal resistance
      0.033   13.2   6.0      0.049   12.6   4.2    1.3  1  PF01056.13 Myc amino-terminal region
      0.042   13.4   0.6      0.073   12.6   0.4    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
      0.067   12.6   0.5       0.14   11.6   0.3    1.5  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
       0.13   11.3   0.4        1.4    8.0   0.3    2.0  2  PF01213.14 Adenylate cyclase associated (CAP) N terminal
       0.74    9.7   4.6        1.1    9.1   3.2    1.2  1  PF08432.5  Fungal protein of unknown function (DUF1742)
        5.6    6.3  12.2         10    5.5   8.4    1.4  1  PF03066.10 Nucleoplasmin
        6.8    5.7   9.0         13    4.7   6.2    1.5  1  PF06524.7  NOA36 protein


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   1.5   1.8e-10     2e-07       1      33 [.     227     259 .]     227     259 .] 0.97

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.8e-10
   PF13639.1   1 deCaiCldelsegeevvrlpCgHvfHeeCldew 33 
                 ++C+iC  e+++++++++lpC+H  H +Cl++w
  MMETSP0890-20130614|5821_1 227 EQCSICRLEFESEDNLTVLPCNHADHTDCLAQW 259
                 58********99********************9 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   5.6e-07   0.00064       4      33 ..     228     259 .]     226     259 .] 0.90

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.6e-07
   PF13923.1   4 sCpiCleelen..pviltpCgHlyCkkCieqw 33 
                  C+iC  e+e+   ++++pC+H  + +C+ qw
  MMETSP0890-20130614|5821_1 228 QCSICRLEFESedNLTVLPCNHADHTDCLAQW 259
                 7********87777778*************99 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   3.4e-06    0.0038      20      64 ..     227     259 .]     210     259 .] 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.4e-06
   PF12678.2  20 dnCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskW 64 
                 ++C iCr e+          +++d+ +v+   C+Ha H++C+ +W
  MMETSP0890-20130614|5821_1 227 EQCSICRLEF----------ESEDNLTVL--PCNHADHTDCLAQW 259
                 679******9..........223556765..4************* PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.65   7.4e+02       8      19 ..      14      25 ..      12      26 .. 0.80
   2 !   15.8   1.0   6.5e-06    0.0074       1      29 [.     229     259 .]     229     259 .] 0.95

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.65
                -SSEE.BSCTS- CS
  PF00097.20  8 akepnelleCkH 19
                +ke+n + +C+H
  MMETSP0890-20130614|5821_1 14 MKEKNAPEKCGH 25
                677888999**9 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 6.5e-06
                 -TTTSSS-SSEE...BSCTS-EE-CHHHHHH CS
  PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirki 29 
                 C+iC  e++ ++  ++l+C+H+ +++C+ ++
  MMETSP0890-20130614|5821_1 229 CSICRLEFESEDnlTVLPCNHADHTDCLAQW 259
                 ********999989**************987 PP

>> PF13801.1  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.5   2.5e-05     0.028      18      75 ..      50     104 ..      42     115 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.5e-05
   PF13801.1  18 lrgpgppgggpparrhelrpaalaLpeeqrralraalrearrevralrralraarrel 75 
                 l++p+pp+++pp   + l pa +++++e+r++lr a++ + +e +   +++r a+r l
  MMETSP0890-20130614|5821_1  50 LGRPSPPPPPPPT--PLLPPADDGMTAEERESLRLAMELESEEEQYFEEQRRGAER-L 104
                 4444555444444..**********************9888766666666555543.3 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.2   4.3e-05     0.049     211     246 ..     107     141 ..      69     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-05
  PF01056.13 211 vlrtspnsssssgedseseeeeeeeeeeeeeeeiDv 246
                   r+ ++s  +++ed e++e++++ eee++eeeiD 
  MMETSP0890-20130614|5821_1 107 LERARAASKGTRDEDNEDDEDDDY-EEENDEEEIDE 141
                 456667788889999997777777.66677889984 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   6.4e-05     0.073       3      30 ..     227     256 ..     225     259 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-05
   PF13920.1   3 ktCvvCler...eadvlllpCgHlclCeeCa 30 
                 ++C +C+ +   e + ++lpC+H+    +C 
  MMETSP0890-20130614|5821_1 227 EQCSICRLEfesEDNLTVLPCNHA-DHTDCL 256
                 6899**875333788********9.777776 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00012      0.14      12      43 ..     228     259 .]     218     259 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
                 B-TTT-S.-SS....EEEES---EEEHHHHHHH CS
   PF13445.1  12 aCpiske.qsteqnpPvvLpCGhvisrealekl 43 
                 +C i++  + +e+n  v LpC h    ++l ++
  MMETSP0890-20130614|5821_1 228 QCSICRLeFESEDNLTV-LPCNHADHTDCLAQW 259
                 7*****99******966.*****9999988776 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3    0.0012       1.4     228     245 ..      51      70 ..      27     116 .. 0.62
   2 ?    1.2   0.0      0.14   1.6e+02     258     293 ..     151     188 ..     137     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXXXX..XX... CS
  PF01213.14 228 sktaaPppPpppp..pPsvd 245
                 ++++ PppPpp+p  pP  d
  MMETSP0890-20130614|5821_1  51 GRPSPPPPPPPTPllPPADD 70 
                 33333333333222234322 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.14
                 ..XXXXXXXXXXXXXXXXXXXX..XXXXXXXXX.XXXX CS
  PF01213.14 258 skgslgavFaelnkGeeitkgL..kkvdddekthKnpe 293
                 ++++  a+F  ln G++i + +  ++v+ +++t+   +
  MMETSP0890-20130614|5821_1 151 QEEDDRALFMVLNGGSDIPSDVvpRNVSPSQMTYDQLN 188
                 4667789***********99876699******997765 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.2   0.00098       1.1      51     126 ..      66     140 ..      62     158 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00098
   PF08432.5  51 Pivdaeaeeakkkkkelkeeiekvkkeyeekqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelk 126
                 P  d+  ++++++  +l+ e+e+ +++y e+q++ +e  ++ + + ++ +   d++++++e+++++e e+++ee++
  MMETSP0890-20130614|5821_1  66 PPADDGMTAEERESLRLAMELESEEEQYFEEQRRGAERLAELERARAASKGTRDEDNEDDEDDDYEE-ENDEEEID 140
                 5556666677778889999999999999999999888888763333322222222222222222222.22222222 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.4    0.0088        10     117     138 ..      96     140 ..      72     145 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0088
                 ........................----XXXXXXXXXXXXXXXXX CS
  PF03066.10 117 e.......................eddeedeeeeddeedddeeee 138
                 e                       ed+e+de+++ +ee+d+ee +
  MMETSP0890-20130614|5821_1  96 EqrrgaerlaeleraraaskgtrdEDNEDDEDDDYEEENDEEEID 140
                 366666677777777777666332333333333333333333332 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.2     0.012        13     261     294 ..     107     140 ..      69     156 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.012
   PF06524.7 261 ygdaksvnygyesdddeeesaedydeeededddd 294
                    a++++ g + +d+e+++++dy+ee+de++ d
  MMETSP0890-20130614|5821_1 107 LERARAASKGTRDEDNEDDEDDDYEEENDEEEID 140
                 3334556677777788888999999988776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       939  (0.0686805); expected 273.4 (0.02)
Passed bias filter:                      594  (0.0434465); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.61s 00:00:01.08 Elapsed: 00:00:00.81
# Mc/sec: 766.24
//
Query:       MMETSP0890-20130614|5830_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   19.0   0.0     0.0033   17.7   0.0    1.6  2  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.4e-07    0.0033       8      87 ..     147     247 ..     141     260 .. 0.75
   2 ?   -3.6   0.0         1   1.4e+04      66      79 ..     305     319 ..     293     322 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.4e-07
   PF13640.1   8 pggflspHvDnse........sssrrltlllylndpeweeeGGelelypsd.r........segvakeved..........eevv...pkpgrlvlFksdrslHrvtpv......g 87 
                 + ++l +H+D++e        + s +++ ++yl+ ++    GG ++l +                    +d             +   p  gr + F++ r +H+v p+      +
  MMETSP0890-20130614|5830_1 147 RSQRLDWHFDKDEelcagtgiYLSPQISTVTYLT-AN----GGPTVLLDCAaHpatgipvsI-------DDlncpiqscqtL--ElvyPAIGRHLSFDG-RKMHAVVPAlqrqsaS 247
                 56899******99*********************.77....9******87744955555551.......5444333333222..1447***********.******9996544443 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1
   PF13640.1  66 pkpg.rlvlFksdrs 79 
                 ++p  r++lF++++s
  MMETSP0890-20130614|5830_1 305 LVPApRIALFPGEDS 319
                 566668999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.72
# Mc/sec: 1214.82
//
Query:       MMETSP0890-20130614|5836_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.1   0.1       0.13   12.0   0.0    1.1  1  PF10256.4 Golgin subfamily A member 7/ERF4 family


Domain annotation for each model (and alignments):
>> PF10256.4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.3e-06      0.13      70     104 ..      17      51 ..       6      58 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.3e-06
   PF10256.4  70 lssllleshskrklaklekyieelNeellhkrglk 104
                  +s + +++ k++la+l+++++++N +l  +r+l 
  MMETSP0890-20130614|5836_1  17 SISVIDHTYAKEELASLSDLVAQQNATLNTQRNLI 51 
                 445555999*****************999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 188.51
//
Query:       MMETSP0890-20130614|5831_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-64  216.7   0.0    3.1e-64  216.2   0.0    1.2  1  PF01434.13 Peptidase family M41
    1.2e-29  103.0   0.0    5.8e-26   91.1   0.0    2.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
  ------ inclusion threshold ------
      0.027   13.7   0.0       0.05   12.8   0.0    1.4  1  PF13398.1  Peptidase M50B-like
      0.032   14.0   0.2        2.4    7.9   0.0    2.5  3  PF07724.9  AAA domain (Cdc48 subfamily)


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   0.0   9.2e-68   3.1e-64       3     212 ..     164     372 ..     162     373 .. 0.93

  Alignments for each domain:
  == domain 1    score: 216.2 bits;  conditional E-value: 9.2e-68
                 HHHHHCCHHHH------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01434.13   3 keleeaidrvlaGlekksrvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlflpeedkll...ltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmse.klGpvaleeeeeeevflgrelkkekelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeiee 212
                 +e++ aidr+ +Gl+k + + +  +++lvAyHEaGHa++++l+++ d+v+K tiiPR + a+G+tlf+p+ed+ +   ++ + l  ++av+lgGr+aEel++g +evttGasnDl++v ++ar+mv+++G+s+  l p a e +++      +++   ++ se+t+++id+ev +lv++ay+ ++e++ +nr  l+al+e+Lle Et+d+ ++++
  MMETSP0890-20130614|5831_1 164 DEIDYAIDRLTVGLAKTTGMNNPSRQRLVAYHEAGHAIMAALTEGYDTVAKLTIIPRSNgAGGFTLFTPSEDRAEsgmYSYKFLKGQLAVALGGRVAEELVYGGEEVTTGASNDLQQVRNIARRMVAQWGFSSdALSPTAWEAADAG-----QQM-MPQSASEQTESTIDAEVAKLVNDAYQVCRETIAQNRPLLDALVEELLECETIDGTDLDR 372
                 799*********************************************************************998887899999***********************************************8615777887776663.....344.35689*************************************************99987 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   1.7e-29   5.8e-26      36     131 ..       3     101 ..       1     102 [. 0.92
   2 !    9.5   0.0   0.00027      0.92      28      71 ..     124     170 ..     115     193 .. 0.85

  Alignments for each domain:
  == domain 1    score: 91.1 bits;  conditional E-value: 1.7e-29
                 SST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24  36 skyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++vg ++++ir+lf+eak++a p+i+fiDEida++++r      ++++e+e+++nq+lte+dg++ +++ viv++atnr d ld allr gRfdr++ ++
  MMETSP0890-20130614|5831_1   3 EMFVGVGASRIRNLFDEAKKNA-PCIVFIDEIDAIGRQRsgggGFATNDEREQTLNQILTEMDGFSGNTG-VIVLAATNRGDILDTALLRpGRFDRRVPVD 101
                 579******************9.****************8875455999******************866.*************************99775 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00027
                 EEECCSSSSST-HHHHHHHHHHHHHHHHTS...-SEEEEEETGGGC- CS
  PF00004.24  28 eisgsellskyvgesekkirelfkeakeka...kpsilfiDEidala 71 
                 e++++e+   ++g s + +++l++ea  +a   ++ ++ +DEid  +
  MMETSP0890-20130614|5831_1 124 EVDLAEIAARTIGFSGASLQNLMNEAAIMAarrNKDVITFDEIDYAI 170
                 6778888888999999*********9888888777*********765 PP

>> PF13398.1  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.5e-05      0.05      19      54 ..     186     223 ..     174     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
   PF13398.1  19 pfkllvvlvHElGHalaalltGg..rvkgielhsdesG 54 
                 p +   v  HE+GHa++a lt g   v ++++ +++ G
  MMETSP0890-20130614|5831_1 186 PSRQRLVAYHEAGHAIMAALTEGydTVAKLTIIPRSNG 223
                 566667999************76445888888887544 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0007       2.4      70      86 ..      24      42 ..       8      65 .. 0.70
   2 ?    3.5   0.0     0.016        54      52      82 ..     141     171 ..     124     186 .. 0.84
   3 ?   -4.0   0.0       3.1   1.1e+04      39      48 ..     317     329 ..     302     340 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0007
                -..-EEEETGGG------- CS
   PF07724.9 70 G..ivllDEidKihpkess 86
                   iv++DEid i +++s 
  MMETSP0890-20130614|5831_1 24 ApcIVFIDEIDAIGRQRSG 42
                245**********997333 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.016
                 HHHHHHHHTTT-HHHHT---EEEETGGG--- CS
   PF07724.9  52 lvsrligappgyvgaeegGivllDEidKihp 82 
                 ++++l+ ++  + ++ ++ ++ +DEid +  
  MMETSP0890-20130614|5831_1 141 SLQNLMNEAAIMAARRNKDVITFDEIDYAID 171
                 5677888888888899999********8765 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 3.1
                 EGGG---...--- CS
   PF07724.9  39 daselle...eee 48 
                  ase +e   + e
  MMETSP0890-20130614|5831_1 317 SASEQTEstiDAE 329
                 3333333111222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.89
# Mc/sec: 1052.78
//
Query:       MMETSP0890-20130614|5839_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.34s 00:00:00.63 Elapsed: 00:00:00.61
# Mc/sec: 212.14
//
Query:       MMETSP0890-20130614|5832_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-45  152.9   0.1    4.9e-45  152.6   0.1    1.1  1  PF00719.14 Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> PF00719.14  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.1   3.6e-49   4.9e-45       2     155 ..      67     244 ..      66     245 .. 0.96

  Alignments for each domain:
  == domain 1    score: 152.6 bits;  conditional E-value: 3.6e-49
                 EE-SB-TT--EEEEE-S----EEEEE.......E-SSS.B--SSBB--BTT---............-----BEEEE--SS---TTEEEEEEE---EEEEE---BEEEEEEEETT-CCG.TT--SGGGS-HHHHHHHHHHHHHTTTTS...TT--EEE--B--HHHHHHHHHHHHHHHH CS
  PF00719.14   2 vviEipkgsraKyeidkeegllpvdr.......llyvs.lkypanYGfipqtle............gDgDplDvlvlgseplapgsvvkvrvlGvlaliDegetDdKilavpvedpey.kdikdvedlppgllkeieefFetykdle...enkfvkvegwkdaeeAlkvieeaieryk 155
                 +v+Eip g+r+K+ei+k+ +++p+ +       ++y++  + ++nYG+ipqt+e            gD+Dp+Dvl+l +++++ g v +vrvlG+laliD+getD+K+l+v+v+d++   + k+++d+p + ++++ ++F+ yk++e    nk +++++  da++Al+v ++++e+++
  MMETSP0890-20130614|5832_1  67 FVCEIPLGTRQKMEIHKSLKMNPMVQdkfkdgsPRYYKySPSIVNYGAIPQTWEnpdfldpdtglgGDNDPIDVLQLNEKSCERGAVQRVRVLGALALIDDGETDWKLLVVDVDDSSNaTTWKQLSDIPTERIDQVTDWFRVYKMIEgkpMNKYAFNDKPVDAQHALRVAKQTHEHWQ 244
                 79************************9999999777776899************************************************************************988856****************************999**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.85
# Mc/sec: 772.47
//
Query:       MMETSP0890-20130614|5848_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   53.2  11.5      3e-14   53.0   8.0    1.0  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
      0.027   14.1   0.1      0.062   12.9   0.0    1.5  1  PF13940.1  Toxin Ldr, type I toxin-antitoxin system


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   8.0   4.4e-18     3e-14       3     123 ..      40     165 ..      38     169 .. 0.93

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 4.4e-18
  PF02466.14   3 lektvlagvagfalGavyGlfmrsmhaatklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleglr.g....kndllnsvaAGaltGavlarrggpqaaavgaagfaafsaaiea 123
                 le+ ++ ++  +++G+ +G+++++  a +   ++++++   +++++  ++r++  ++ f++++++Ys+ e++  +l+ +     +d+ n ++AG +tG  +++ +gp+a++ ++a+++ ++a + +
  MMETSP0890-20130614|5848_1  40 LERMFFNCGSMYLVGMFGGGIYGAGAAYRSEASGASFRVITNSMMNGFGKRGANAGNAFGAIALLYSCYESIADSLQlHafvqNHDAANPIFAGIATGFTYKAFAGPRAIVLAGALGGSLAASLHY 165
                 78999******************999888899*******************************************986556656**********************************99997766 PP

>> PF13940.1  Toxin Ldr, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-06     0.062      12      26 ..     124     138 ..     118     140 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9e-06
   PF13940.1  12 HDLAAPilaGIiagl 26 
                 HD A Pi aGI++g 
  MMETSP0890-20130614|5848_1 124 HDAANPIFAGIATGF 138
                 *************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 646.64
//
Query:       MMETSP0890-20130614|5845_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-13   47.8   9.8    5.2e-06   25.2   0.7    4.1  4  PF00036.27 EF hand
    1.1e-11   44.6   4.5    1.6e-10   40.8   2.7    2.9  2  PF13499.1  EF-hand domain pair
    8.6e-11   41.1   6.5    8.7e-05   21.9   0.2    3.9  4  PF13833.1  EF-hand domain pair
    1.5e-10   39.8   4.8    7.9e-05   22.1   0.2    3.7  4  PF13405.1  EF-hand domain
    1.1e-09   37.0   4.7    0.00012   21.1   0.1    2.7  2  PF13202.1  EF hand
    0.00039   20.3   0.3     0.0014   18.5   0.1    1.9  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.86     2e+03       9      17 ..       2      10 ..       1      10 [. 0.86
   2 ?    3.8   0.0     0.017        38       2      27 ..      67      92 ..      66      94 .. 0.80
   3 !   22.1   0.3   2.3e-08   5.3e-05       1      26 [.     154     179 ..     154     181 .. 0.91
   4 !   25.2   0.7   2.3e-09   5.2e-06       1      28 [.     195     222 ..     195     223 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.86
                HCTTTSSEB CS
  PF00036.27  9 fDkDgdGkI 17
                +D  +dG I
  MMETSP0890-20130614|5845_1  2 VDEENDGAI 10
                7999***87 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.017
                HHHHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealk 27
                +  a+k++D D  G++   ++ +a++
  MMETSP0890-20130614|5845_1 67 IILAMKKLDPDTKGTVKAIDWARAMT 92
                5669**********998777777776 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkeal 26 
                 e+ ++F+++D Dg+G ++ +Ef++ +
  MMETSP0890-20130614|5845_1 154 EFTKLFRILDNDGSGLLDRDEFVKGC 179
                 6789******************9876 PP

  == domain 4    score: 25.2 bits;  conditional E-value: 2.3e-09
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 ++++++k +D++gdG+Isf Ef e l++
  MMETSP0890-20130614|5845_1 195 DVDKFMKQLDVNGDGRISFVEFTEGLMN 222
                 5899*******************99987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27   6.1e+02      43      57 ..      68      82 ..      46      91 .. 0.65
   2 !   40.8   2.7   7.2e-14   1.6e-10       4      64 ..     157     218 ..      70     220 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.27
   PF13499.1 43 dyifkelDkngdGvl 57
                   +k+lD +  G++
  MMETSP0890-20130614|5845_1 68 ILAMKKLDPDTKGTV 82
                344777777777765 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 7.2e-14
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels.....deevrevldyifkelDkngdGvlsfeEflq 64 
                 ++F+ lD dg+g ld++e+++ +  ++s +      +++v+++    +k+lD ngdG++sf Ef +
  MMETSP0890-20130614|5845_1 157 KLFRILDNDGSGLLDRDEFVKGCEIINSLKGeqvfdPSDVDKF----MKQLDVNGDGRISFVEFTE 218
                 26*************************9988888888888888....*****************87 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.74   1.7e+03      34      42 ..       2      10 ..       1      10 [. 0.88
   2 ?    3.4   0.0     0.023        51      31      53 ..      71      93 ..      67      94 .. 0.92
   3 !   16.6   0.2   1.7e-06    0.0039      25      49 ..     153     177 ..     152     182 .. 0.93
   4 !   21.9   0.2   3.8e-08   8.7e-05      18      49 ..     187     218 ..     180     220 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.74
   PF13833.1 34 fDtdgdGki 42
                +D ++dG+i
  MMETSP0890-20130614|5845_1  2 VDEENDGAI 10
                699****98 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.023
   PF13833.1 31 frefDtdgdGkisfeEFcvller 53
                ++++D d +G ++  ++ +++++
  MMETSP0890-20130614|5845_1 71 MKKLDPDTKGTVKAIDWARAMTD 93
                789****************9987 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.7e-06
   PF13833.1  25 eevdilfrefDtdgdGkisfeEFcv 49 
                 +e++ lfr +D dg+G ++ +EF++
  MMETSP0890-20130614|5845_1 153 DEFTKLFRILDNDGSGLLDRDEFVK 177
                 78999******************96 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 3.8e-08
   PF13833.1  18 glkglseeevdilfrefDtdgdGkisfeEFcv 49 
                 g + + +++vd  ++ +D +gdG+isf EF +
  MMETSP0890-20130614|5845_1 187 GEQVFDPSDVDKFMKQLDVNGDGRISFVEFTE 218
                 5555999***********************86 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.4   7.9e+03      10      17 ..       3      10 ..       2      10 .. 0.84
   2 ?    0.1   0.0      0.41   9.3e+02       6      27 ..      71      92 ..      66      98 .. 0.81
   3 !   22.1   0.2   3.5e-08   7.9e-05       1      25 [.     154     178 ..     154     183 .. 0.91
   4 !   16.6   0.1     2e-06    0.0045       3      27 ..     197     221 ..     195     225 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.4
                -------B CS
   PF13405.1 10 DkdgdGki 17
                D  +dG i
  MMETSP0890-20130614|5845_1  3 DEENDGAI 10
                8999**87 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.41
                -GCC-------B---HHHHHHH CS
   PF13405.1  6 FklfDkdgdGkidaeELrdaLr 27
                 k++D d +G++ a +  +a++
  MMETSP0890-20130614|5845_1 71 MKKLDPDTKGTVKAIDWARAMT 92
                5899999999998888888776 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 3.5e-08
                 HHH---GCC-------B---HHHHH CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrda 25 
                 e+ ++F+++D+dg+G +d++E+++ 
  MMETSP0890-20130614|5845_1 154 EFTKLFRILDNDGSGLLDRDEFVKG 178
                 6889******************985 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 2e-06
                 H---GCC-------B---HHHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                  ++ k++D +gdG+i++ E+   L 
  MMETSP0890-20130614|5845_1 197 DKFMKQLDVNGDGRISFVEFTEGLM 221
                 67889***************99886 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.6   1.2e-06    0.0027       3      21 ..     157     175 ..     155     178 .. 0.92
   2 !   21.1   0.1   5.2e-08   0.00012       3      23 ..     198     218 ..     196     221 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.2e-06
                 HHHHHH--S----B-HHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                 ++Fr +D +g+G ++r+E+
  MMETSP0890-20130614|5845_1 157 KLFRILDNDGSGLLDRDEF 175
                 68****************9 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.2e-08
                 HHHHHH--S----B-HHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkr 23 
                 ++ +++D+NgDG+Is+ E+ +
  MMETSP0890-20130614|5845_1 198 KFMKQLDVNGDGRISFVEFTE 218
                 6789************99976 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.81   1.9e+03      70     111 ..      47      88 ..      34      90 .. 0.62
   2 !   18.5   0.1   6.2e-07    0.0014      34     112 ..     118     218 ..      88     219 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.81
   PF10591.4  70 vlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                 +l+ + ++ +++ l+ +++ i   +k+ D d +++++   W+
  MMETSP0890-20130614|5845_1  47 KLESAAMQRVETALLDHRREIILAMKKLDPDTKGTVKAIDWA 88 
                 455555666666666666666666677777777777777775 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 6.2e-07
   PF10591.4  34 k...............ehseelekeaekknskeckeaveWkFnqlDtnkdkvlsk.......sElaplraplvklehCikeffksCDadkdkkisleEWck 112
                                 +++e +e+++ k+n ++++++    F  lD +  ++l++       + +++l+ + v   + +++f+k+ D++ d++is+ E+++
  MMETSP0890-20130614|5845_1 118 LisyssflrkltsafgDEQEPQEEKEYKENLHRMRDEFTKLFRILDNDGSGLLDRdefvkgcEIINSLKGEQVFDPSDVDKFMKQLDVNGDGRISFVEFTE 218
                 35555555566666767788889999999**************************333333222456666668888889*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.83
# Mc/sec: 658.28
//
Query:       MMETSP0890-20130614|5847_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-27   94.5   0.2    8.3e-27   93.4   0.2    1.6  1  PF03109.11 ABC1 family
  ------ inclusion threshold ------
      0.044   12.8   0.0        0.2   10.7   0.0    1.7  1  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.2   1.2e-30   8.3e-27       2     119 .]     120     248 ..     119     248 .. 0.90

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 1.2e-30
  PF03109.11   2 elgkpveevFaefdeePlAaASiaQVHrAvlks.geeVavKvqrpgvkkriksDlkllkllakllkkiskea....rldleelvdelskelaeeldfkrEAknaekfrenfakl......kevkvPkvy 119
                 elg+p + +F+e+++eP+AaAS+aQV++A+l+s ++ Va+Kvqrp+v  ++++Dl++l++ a++++++  ++    + ++  l+++++   ++eldf +E +n++++r  + +       + v+vPkvy
  MMETSP0890-20130614|5847_1 120 ELGEPADVFFSEISPEPVAAASLAQVYKARLRSnNQWVAIKVQRPQVLATVSKDLYVLRRAAEIYQRLIDRFapqqKTNYVDLLNTFAVGFYSELDFLNEVQNQKRIRAILVDQdtnkakNGVYVPKVY 248
                 89******************************9899***********************99988776554443333999*****************************998877778888889999997 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.9e-05       0.2     114     166 ..     251     305 ..     187     322 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.9e-05
   PF06176.6 114 yvkvyimlieyieGvelndlpe..isedlkdkikesikelhehgmvsGdphkGnf 166
                 +    + + e+ieG  ln++ +  i e +    ++ +++l + g++  dphkGn+
  MMETSP0890-20130614|5847_1 251 FCTARLAVTEWIEGKALNEIDDqsIRELIPYAQEAFLTQLLKEGFLHADPHKGNW 305
                 666667899********99864337888888888999*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:01.05
# Mc/sec: 1707.12
//
Query:       MMETSP0890-20130614|5840_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.4   0.2    2.3e-12   46.5   0.1    1.4  1  PF08498.5  Sterol methyltransferase C-terminal
    1.3e-07   31.8   0.0      3e-07   30.7   0.0    1.6  1  PF08241.7  Methyltransferase domain
    2.4e-06   27.0   0.0    4.8e-06   26.1   0.0    1.4  1  PF13847.1  Methyltransferase domain
    4.8e-06   26.2   0.0    8.9e-06   25.3   0.0    1.5  1  PF13489.1  Methyltransferase domain
    2.7e-05   23.2   0.0    4.3e-05   22.6   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
    0.00032   20.9   0.0    0.00052   20.3   0.0    1.3  1  PF08242.7  Methyltransferase domain
     0.0086   16.5   0.0      0.015   15.7   0.0    1.3  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
      0.054   12.4   0.0      0.082   11.8   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
      0.058   13.2   0.0       0.13   12.1   0.0    1.5  1  PF04075.9  Domain of unknown function (DUF385)


Domain annotation for each model (and alignments):
>> PF08498.5  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   1.5e-15   2.3e-12       1      64 [.     307     370 ..     307     372 .. 0.97

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.5e-15
   PF08498.5   1 lltifrttklGrlitrnlvkvlEkiglaPkGskkvtdaLekAaegLVaGgkkklFTPmflfvar 64 
                 ++t +r++++Gr +t++ v++lEkig+a  G+++++ ++e+   +   +g+ ++FTP+  ++a+
  MMETSP0890-20130614|5840_1 307 FFTKMRSSHVGRKLTMATVWALEKIGIAEPGTYRTALMMEHCGYSAAVAGEMGIFTPLWVMIAK 370
                 6899**********************************************************96 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     2e-10     3e-07       2      93 ..     129     228 ..     128     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2e-10
   PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle.......lvvadaeel..pfednsfDvvvssevlehledpekalkeiaRvLkpgGll 93 
                 d+G+G g  ++ +ae  +a++ gv   + +l++a +  k+   +       + ++d  +l   +e ++fD v++ e l h+ed++k l++++ +Lk++G++
  MMETSP0890-20130614|5840_1 129 DLGMGVGGPARRIAEFTGASIEGVTNCKYQLQRAANITKPLP-QwhkdrlkYTEGDYNNLptSMEKGTFDRVYFLESLSHCEDRAKPLEQARLLLKEDGYV 228
                 99***************************9998877665543.34678899*********4445588********************************96 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.2e-09   4.8e-06       2     106 ..     122     228 ..     121     230 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.2e-09
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe...nveFiqgdieelekl.leesfDlvisnevlnaladpqkvlkeiervlkpggrl 106
                 k g+kv DlG G G  ++++a e  +ga + G+   + ++++A ++++ l      ++++ +gd ++l+++  + +fD v + e l ++ d +k l++++ +lk++g++
  MMETSP0890-20130614|5840_1 122 KPGMKVADLGMGVGGPARRIA-E-FTGASIEGVTNCKYQLQRAANITKPLPQWhkdRLKYTEGDYNNLPTSmEKGTFDRVYFLESLSHCEDRAKPLEQARLLLKEDGYV 228
                 789******************.3.679999***************888665433459************99666********************************985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.9e-09   8.9e-06      20     159 ..     121     279 ..     109     282 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.9e-09
   PF13489.1  20 lkpggrvLDiGcGtGillellaen.gfdvtgvDpspaaigk.....................akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas.......lasdeafakwdylvprgthisffsaeslkelleeaGfei 159
                  kpg++v D+G G G  ++ +ae+ g++++gv   + + ++                     ++++ ++++        +g+fd +++ e+l h  d ++ l+q++ llk++Gy++   +  +       ++++e+     ++   g+ +++  +e+    +e+aG+e+
  MMETSP0890-20130614|5840_1 121 IKPGMKVADLGMGVGGPARRIAEFtGASIEGVTNCKYQLQRaanitkplpqwhkdrlkytegDYNNLPTSM-------EKGTFDRVYFLESLSHCEDRAKPLEQARLLLKEDGYVGAWQWMLTpafnysdPYHIELKRG--MEYG-GGLRNLNKPEERIAEMERAGLEV 279
                 699************99****999999*******9999988888888887777765555544333333333.......688*********************************9876654433333333223333222..2222.25555666666666666666665 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.8e-08   4.3e-05      58     160 ..     119     226 ..     114     236 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.8e-08
                 T------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B-..--TT---.....--SEEEE---GGGT--TCHHHHHHHHHHCS---- CS
  PF02353.15  58 lelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevkll..dyedlde.....kvdrvvsvgafehvgkenydtffkklkkllkedG 160
                 l++kpGm++ d+G G G+ +rr +e  ++++ g+T  k q ++a +  + l   +k ++k++  dy++l+       +drv  ++ + h   +   +  +++  llkedG
  MMETSP0890-20130614|5840_1 119 LGIKPGMKVADLGMGVGGPARRIAEFTGASIEGVTNCKYQLQRAANITKPLPQWHKDRLKYTegDYNNLPTsmekgTFDRVYFLESLSHCEDRA--KPLEQARLLLKEDG 226
                 899**********************************************9999998888876448***9877777899***9999999986554..33566666666666 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.4e-07   0.00052       2      98 ..     129     227 ..     128     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.4e-07
   PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 ++G G+G  +r+++e   ++++ gv   ++++++a++ ++  ++ + +++++ + d  +l      ++fD v+ ++ l+h++d+ + l+++r lLk +G 
  MMETSP0890-20130614|5840_1 129 DLGMGVGGPARRIAEF-TGASIEGVTNCKYQLQRAANITKPLPQWHKDRLKYTEGDYNNLPTSmekGTFDRVYFLESLSHCEDRAKPLEQARLLLKEDGY 227
                 7888999999999777.6666667777777776777666666666666666666665555444666********************************96 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.7e-06     0.015       2     107 ..     124     228 ..     123     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9.7e-06
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgv...Dpseeslelarenaksldleeriellqgdakeelsller..fDavllkgltldallal.deprrvlealpkllkpggrl 107
                 g ++ DlG G+G  +  +a+ + ga + gv    ++ + ++ + + +  +   +r+++ +gd ++ ++  e+  fD v   +      l++ +++ + le+++ llk +g++
  MMETSP0890-20130614|5840_1 124 GMKVADLGMGVGGPARRIAE-FTGASIEGVtncKYQLQRAANITKPL-PQWHKDRLKYTEGDYNNLPTSMEKgtFDRVYFLE-----SLSHcEDRAKPLEQARLLLKEDGYV 228
                 6789****************.79999888822244555555555555.57788**********88888888889******99.....77777888888***********985 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.4e-05     0.082      33     166 ..     108     245 ..     102     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.4e-05
  PF01209.13  33 rlWkk.fveklvavkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaeeLp..feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqay 166
                   W + fv    + k+g kv D+  G g  a ++++  g++   v+ + ++ +      k l +  k ++++  ++ ++Lp  +e+++fD v     l    D+ k L++a+  lk  G +          + +s +y
  MMETSP0890-20130614|5840_1 108 AFWEEvFVGTYLGIKPGMKVADLGMGVGGPARRIAEFTGASIeGVTNCKYQLQRAANITKPLPQWHKDRLKYTEGDYNNLPtsMEKGTFDRVYFLESLSHCEDRAKPLEQARLLLKEDGYVGAWQWMLTPAFNYSDPY 245
                 6799999********************************99835778888888777788889999999************933467********9*********************9998876665555555555555 PP

>> PF04075.9  Domain of unknown function (DUF385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-05      0.13      10      87 ..     307     381 ..     301     389 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.2e-05
   PF04075.9  10 ryrrteg.kigrrleglpvllLetvGrrsGkprrtpLvsardgdrvlvvaslGGapknpdwykNlkAnPkvrvqvggkt 87 
                 ++ ++   ++gr+l ++ v  Le +G      +rt+L++ + g++ +v  ++G     p w+    A+Pk    v+++t
  MMETSP0890-20130614|5840_1 307 FFTKMRSsHVGRKLTMATVWALEKIGIAEPGTYRTALMMEHCGYSAAVAGEMG--IFTPLWVM--IAKPKKTTTVKQET 381
                 666777779********************************************..66777774..56666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.43s 00:00:01.11 Elapsed: 00:00:00.68
# Mc/sec: 1377.91
//
Query:       MMETSP0890-20130614|5850_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-44  149.8   0.4    7.8e-44  149.5   0.3    1.1  1  PF00852.14 Glycosyltransferase family 10 (fucosyltransferase)


Domain annotation for each model (and alignments):
>> PF00852.14  Glycosyltransferase family 10 (fucosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.3   5.7e-48   7.8e-44      45     335 ..     116     437 ..      87     440 .] 0.77

  Alignments for each domain:
  == domain 1    score: 149.5 bits;  conditional E-value: 5.7e-48
  PF00852.14  45 k.........ekevvillwtepfgkefd....alkdCkekfnisgCvlttdrsllseadavvfhhrdisedlenlpkepRppgqkwvwfnlEsPsns..krlkgleglFNlTltYrrdSdifl...pygylvkkeeeeekfelpellekKkklvawvvsncneesk..RvkyykeLskhievdvyGkc.........leskaleeee......llktlaqykFyLafENs.lckDYiTEKlwknalaagaVPVvlGpsranyerfvPs.dsfIhvddFs.spkeLaeyLkkLdkndeeYrkYfeWrkkykv........kalsewee..........plckvCkklq 335
                 +         + +vv+l+++++ g   +     +kd ++k   s+C +t+dr++ls+a+++vfh+ + s  ++++p+     + k+ +++lE+       +l+++++ F  T+t+r+dS +++   p ++  ++    +  +++ ++++K + ++ +vsnc++  +  R +++ +Ls+  e+++yG+c         +   +             +++++ykFyLa+EN    kDY+ EK++ + l ag+ P++ G   +++++++P+ d+  ++ d++ +++++a+ L+ L+k++++Y  Yf+Wr+k +         +      +           lc++C++ +
  MMETSP0890-20130614|5850_1 116 QylwdgssksRPRVVVLVYNKIRGYLDWlredFVKDARNKC-SSECIFTADRRQLSSANVIVFHAVTHS--MHDFPRA----KGKFLLVSLEQGRYAklLNLPRYTTKFDATATFRLDSTLPMltiPPHWDADAY--YKAYDTSIPWHQKLNAAVAFVSNCRNAGAqdRLDFLGRLSRVYEIHSYGRClhnkdepspR---P----GesrsdlKRRIVSKYKFYLALENNiDAKDYVSEKVF-EGLLAGSLPIYRG--TDTVAALLPApDAILNTRDYQdDAQKIANRLSLLAKDESAYATYFQWRQKPNDtpnarakfQ------KvldmtaykytALCRICAYAA 437
                 13333334437788888888888777668887566665555.577*******************98887..9999999....8899*******999877999******************986211333333333..333566667***************976544499******************9977765421...2....12233447789************9679*********.99***********..*********99*********83599************************9887665443331......345566666556699999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.71
# Mc/sec: 1485.07
//
Query:       MMETSP0890-20130614|5851_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-23   81.6   0.3    3.5e-23   81.1   0.2    1.2  1  PF01287.15 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
    8.1e-06   25.0   0.1      2e-05   23.8   0.0    1.7  2  PF00467.24 KOW motif
     0.0003   20.4   0.0    0.00048   19.8   0.0    1.4  1  PF08207.7  Elongation factor P (EF-P) KOW-like domain


Domain annotation for each model (and alignments):
>> PF01287.15  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.2   7.8e-27   3.5e-23       1      69 []      83     153 ..      83     153 .. 0.96

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 7.8e-27
  PF01287.15   1 iVkrkeyqLidisdDgfvsLmdedgetkeDlklP..egelaeeikekfeegkevlVtvlsamGeekivavk 69 
                 +V r+ey+L+disd++++sLmd++g+ +eDlk+P   ++l + i++ f +g+++++tv++amGee+++++k
  MMETSP0890-20130614|5851_1  83 NVFRSEYTLLDISDEDYLSLMDDTGDQREDLKMPtyPDDLVKTIRDGFANGDQLILTVVKAMGEEHVMSAK 153
                 688*******************************7666******************************987 PP

>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.5e-09     2e-05       1      26 [.      27      47 ..      27      61 .. 0.89
   2 ?   -2.7   0.0         1   4.7e+03       1      13 [.     119     131 ..     119     132 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.5e-09
                TTBEEEE-----TT-EEEEEEEETTT CS
  PF00467.24  1 kGdyVrvisGpfkGrpGkvvevdrsk 26
                kG+y+ +     kGrp+kvv+v++sk
  MMETSP0890-20130614|5851_1 27 KGGYICI-----KGRPCKVVNVSTSK 47
                8******.....*************9 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1
                 TTBEEEE-----T CS
  PF00467.24   1 kGdyVrvisGpfk 13 
                 ++d V+ i+  f+
  MMETSP0890-20130614|5851_1 119 PDDLVKTIRDGFA 131
                 5799998877666 PP

>> PF08207.7  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   0.00048       2      51 ..      22      72 ..      21      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-07
                GGG-----EEE----EEEEEEEEEEE---.---EEEEEEEES----EEEEE CS
   PF08207.7  2 asdfkkGlvieidgnpwrvvefehvkpGk.gsAfvrtklrnlltGnivekt 51
                a +++kG  i i+g p++vv +  +k Gk g A       ++ tG+++e  
  MMETSP0890-20130614|5851_1 22 AGQIRKGGYICIKGRPCKVVNVSTSKTGKhGHAKCNFTATDIFTGKKLEDI 72
                789***********************8875889999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 620.70
//
Query:       MMETSP0890-20130614|5853_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-29  102.4  38.4    2.8e-14   52.5   8.9    2.2  2  PF07690.11 Major Facilitator Superfamily
    1.8e-07   30.0   3.3    1.8e-07   30.0   2.3    2.3  2  PF00083.19 Sugar (and other) transporter
  ------ inclusion threshold ------
        0.6    8.0  30.7       0.03   12.3   9.9    2.0  2  PF05977.8  Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4  14.7   6.4e-18   2.9e-14       2     178 ..      47     223 ..      46     262 .. 0.89
   2 !   52.5   8.9   6.2e-18   2.8e-14      17     188 ..     268     438 ..     248     499 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 6.4e-18
  PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailslla.avlvllllprepp 178
                 ++++ +++l+r ++ +++p +  ++lg+++ +ig+++++ +lg ++++ +++ l+  +G r +  +gl +++++++ l++  ++w  l+v+ +  Gl ++++  + ++++   +++  rg +l++++++  l++i+gp+lgg+ a++++ r++  i+ +++  + +vl l++lp   +
  MMETSP0890-20130614|5853_1  47 YCVTGVVGLGRQLAVTLVPVFAVQSLGLNSRQIGIATACVGLGRILGNGPGACLGKSIGDRATAAVGLSVLVVAGAGLAV-VTSWIGLCVAQAGLGLHSSVFELGRQSYLRIAVADHVRGTVLSFVGSAKRLASIIGPALGGAAAHAASPRSAIAIFVPACGALsFVLHLCFLPIISS 223
                 6788999*************999***************************************************888885.777889**********************************************************************999988857787788876544 PP

  == domain 2    score: 52.5 bits;  conditional E-value: 6.2e-18
  PF07690.11  17 palplalaedlgispseigwlltlyslgy.aiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaee 188
                  +lp + a  l++++ ++g +++l ++   ++a  + Gr++dr+Grr+  +++ ++++lg+l++++ s     l ++ +l G+g g+   + +++ +d++p ++r+  l+++  ++ +G++lg+ l+g  +++ +  ++  ++a++++l a++v+  lp+++p +   ++ + 
  MMETSP0890-20130614|5853_1 268 LLLP-LRALRLHLDARTLGGVVALGFVSDaGLALSVSGRIMDRHGRRPAGFMSCVGLSLGFLAAAL-SRDVIDLSIAALLLGAGNGLSSGLLMTVSTDLAPSQHRATFLSIFRFCSDCGVLLGAYLAGETCALTNTAVSCGLNALFAILTAIFVVTGLPETRPLSASAKKSQL 438
                 4455.44556788899999988887776548888888***********999999999999555556.676645*******************************************************************************877777777777777666555 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   7.9     0.011        49      44     192 ..      75     219 ..      49     228 .. 0.88
   2 !   30.0   2.3   3.9e-11   1.8e-07      65     194 ..     302     426 ..     279     449 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.011
  PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsnadgwrillglqlvpallllllllflp 192
                  s ++g+ ++++ +g++ G   +  l++ +G + + +v+l ++v++++  a+ +   s+  l+v+++ +Gl   +  +    y+      ++rg++ s+  +a  +  +++  +g + ++ ++  +  i +++++  al ++l l+flp
  MMETSP0890-20130614|5853_1  75 NSRQIGIATACVGLGRILGNGPGACLGKSIGDRATAAVGLSVLVVAGAGLAVVT---SWIGLCVAQAGLGLHSSVFELGRQSYLRIAVADHVRGTVLSFVGSAKRLASIIGPALGGAAAHAAS-PRSAIAIFVPACGALSFVLHLCFLP 219
                 45689****************************999999988888888888888...8*****************999999999988899999999999999999888888888888877777.7888888888888888888888888 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 3.9e-11
  PF00083.19  65 faglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglgl.nktsnadgwrillglqlvpallllllllf.lpeS 194
                 + g ++dr GR+++  +++v ++ g +  a++     v  l ++ +++G g Gl s+l  +    +Ap ++r ++ s++ ++   G l++a ++ ++ + t+      +++gl +++a+l ++++++ lpe+
  MMETSP0890-20130614|5853_1 302 VSGRIMDRHGRRPAGFMSCVGLSLGFLAAALSR---DVIDLSIAALLLGAGNGLSSGLLMTVSTDLAPSQHRATFLSIFRFCSDCGVLLGAYLAGETcALTNT----AVSCGLNALFAILTAIFVVTgLPET 426
                 5788*****************************...9********************************************************9999777777....9************999985438888 PP

>> PF05977.8  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   6.0     0.013        59     229     346 ..      52     169 ..      39     175 .. 0.85
   2 ?   12.3   9.9   6.6e-06      0.03     151     400 ..     178     428 ..     171     447 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.013
   PF05977.8 229 lFglsasavlaLLPlvardelggdalvyGillgalGaGAvlgalllsrlrrrlsserlvllaavalAlvllslalssslwvavlvlllgGaaWiaalstlnvavqlavprWvrgRals 346
                 + gl     ++L+P+ a ++lg ++ + Gi  + +G+G +lg    + l ++++ ++  +++  +l ++ + la+++s   ++++ +  G    +   + ++   +av++ vrg +ls
  MMETSP0890-20130614|5853_1  52 VVGLGRQLAVTLVPVFAVQSLGLNSRQIGIATACVGLGRILGNGPGACLGKSIGDRATAAVGLSVLVVAGAGLAVVTSWIGLCVAQAGLGLHSSVFELGRQSYLRIAVADHVRGTVLS 169
                 55666666789**********************************************999999999999999****999999999888887666666667788888888888888877 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.6e-06
   PF05977.8 151 aRsvGPAlgGvlvaavgaalaf.....avnalsylavivalarwkrevrksalprEkllaalraglRytaaSrelksvlvraalFglsasavlaLLPlvardelggdalvyGillg.alGaGAvlgalllsrlrrrlsserlvllaavalAlvllslalssslwvavlvlllgGaaWiaalstlnvavqlavprWvrgRalsvYltvlaGglaaGsllWGtvaealslelaLllaavall.lgallllllrlpegee 400
                 a  +GPAlgG+   a+ + +a      a  als+++ ++ l  +  +v ++++   +l ++    lR    S  l++v+  a+ +  +  a   LLPl a  +l+ da + G +++ ++ + A l+  ++ r+  r + +    +++v+l l  l++als+++  + ++ ll Ga+  +    l ++   ++p   r+  ls++   +  g+ +G++l G +   ++ +++   +  al+ + +++++++ lpe++ 
  MMETSP0890-20130614|5853_1 178 ASIIGPALGGAAAHAASPRSAIaifvpACGALSFVLHLCFLPIISSSV-EQSINDVSLCTSYATVLRQHMRSLSLTAVFGLAMFWLRT--ARDLLLPLRAL-RLHLDARTLGGVVAlGFVSDAGLALSVSGRIMDRHGRRPAGFMSCVGLSLGFLAAALSRDVIDLSIAALLLGAGNGLSSGLLMTVSTDLAPSQHRATFLSIFRFCSDCGVLLGAYLAGETCALTNTAVSC--GLNALFaILTAIFVVTGLPETRP 428
                 5569*******9988876555400022456899999999888877666.5678999***********999999999887655444444..44559***986.57888888875443134455656666677888899999999*********************************9999999998889999***************************9887665544443..33333303344555666776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:01.15
# Mc/sec: 1229.17
//
Query:       MMETSP0890-20130614|5852_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-11   42.9   0.0    8.6e-11   42.1   0.0    1.5  1  PF00005.22 ABC transporter
    3.1e-05   23.1   0.2    4.8e-05   22.4   0.1    1.2  1  PF01061.19 ABC-2 type transporter
    0.00032   20.6   0.2     0.0023   17.8   0.2    2.1  1  PF13304.1  AAA domain
      0.001   18.1   0.0     0.0023   17.0   0.0    1.6  2  PF03193.11 Protein of unknown function, DUF258
      0.004   17.4   0.0      0.008   16.4   0.0    1.5  1  PF13191.1  AAA ATPase domain
     0.0094   15.2   0.1      0.034   13.4   0.0    1.9  2  PF13481.1  AAA domain
  ------ inclusion threshold ------
      0.026   12.3   0.0      0.044   11.6   0.0    1.2  1  PF05858.7  Bovine immunodeficiency virus surface protein (SU)
      0.032   13.6   0.5       0.13   11.7   0.2    2.0  2  PF13555.1  P-loop containing region of AAA domain
      0.035   13.5   0.0       0.11   11.9   0.0    1.7  2  PF01818.12 Bacteriophage translational regulator
      0.055   14.1   0.1       0.16   12.6   0.0    1.8  1  PF13207.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   6.3e-14   8.6e-11      14     117 ..     109     220 ..      91     221 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 6.3e-14
                 ----EEE-...--BGGGB-HHHHH.EEEE-------.--BHHHHHH----S--.......-HHHHHHHHHH---HHHH--....----------HHHHHHHH.HHTT--SEEEEESTT CS
                 xxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  PF00005.22  14 tegeievd.ndrkdlesdkleklr.igyipqdpllfpeltvrenldmakeekk.......tdkrieevlekvgldelldk....srvstLSgGqkqrvalAr.allkkpklllLDEPt 117
                 ++g+i+++ n        ++e+ r i+++ q    f +ltvre+l+++ + k        ++kri  v++++gld+ ld+    s  ++LSgG+  r+++    +l++++l lLDEP 
  MMETSP0890-20130614|5852_1 109 YNGKIKINgNPL------DTESRReIAFVLQRDIFFDSLTVREELNFSARLKLhhlgsdeRNKRINTVIKALGLDSVLDSkigsSIERGLSGGETTRLKIGVdFFLSEARLALLDEPL 220
                 589999995433......3444456*********************9999987***********************7777799788899***********7626789999*******7 PP

>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   3.5e-08   4.8e-05       2      93 ..     364     458 ..     363     460 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.5e-08
  PF01061.19   2 qikallkreflqryrdpslgllwkliqpllmalvfgtvfgnlg.....nssgglqr.....pgllffsvlflafslltsiapiferergvlerelvsplysl 93 
                 q+ al++r f +++++  l   + +i  l +a + g +f+++g            r     + ++ff+v  +++  +++++++f+ er vl +el+s++ys 
  MMETSP0890-20130614|5852_1 364 QLEALTRRAFVTAKGTV-LK-PLDWILVLSLASIWGWLFFDVGrtakkRG-----RhaadiVSIIFFFVAQFSWGPAFQQVTSFPAERDVLTKELASQTYSI 458
                 78899999999998888.77.569999*************9886433222.....23445699999999999999999999*******************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.7e-06    0.0023       2      97 ..      80     171 ..      79     259 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.7e-06
   PF13304.1   2 nviiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeel 97 
                  +i Gp g+GKS+lL++l     ++ +lg++ + ++++ i++ p    +  +   +  ++++f+s  +r + +f+   + ++ ++ ++ ++++  +
  MMETSP0890-20130614|5852_1  80 LAILGPSGAGKSSLLSVLG----SRPQLGVDGYYNGKIKINGNPLDTESRREIAFVLQRDIFFDSLTVREELNFSARLKLHHLGSDERNKRINTVI 171
                 589****************....9999**********************************9********99999999999433333333333333 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.7e-06    0.0023      32      61 ..      74     103 ..      40     129 .. 0.88
   2 ?   -3.9   0.0       4.4   6.1e+03      69      82 ..     407     420 ..     405     424 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.7e-06
                 HCTTSBEEEE-------HHHHHHH------ CS
  PF03193.11  32 llkdktsvlvGqSGvGKSsLinallpeldl 61 
                 ll++++ +++G+SG+GKSsL+ +l ++ +l
  MMETSP0890-20130614|5852_1  74 LLTGELLAILGPSGAGKSSLLSVLGSRPQL 103
                 5788999***************99887665 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4.4
                 ----------S-BE CS
  PF03193.11  69 klgrGkhTTtavel 82 
                 +++rG+h +  v++
  MMETSP0890-20130614|5852_1 407 AKKRGRHAADIVSI 420
                 679****9877766 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.8e-06     0.008      12      42 ..      63      96 ..      58     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.8e-06
   PF13191.1 12 Llaalrrvsegsp....lllvtGpsGiGKSsLlre 42
                L+ al+ +++g+     ll ++GpsG GKSsLl  
  MMETSP0890-20130614|5852_1 63 LKCALE-SCSGRLltgeLLAILGPSGAGKSSLLSV 96
                677777.44444456779**************976 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.5e-05     0.034      27      54 ..      71      98 ..      45     105 .. 0.85
   2 ?   -2.1   0.0       1.4   1.9e+03     162     189 ..     225     252 ..     221     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.5e-05
   PF13481.1 27 kgllprgsltllaGapgtGKStlalqla 54
                +g+l  g+l+++ G++g+GKS+l+  l+
  MMETSP0890-20130614|5852_1 71 SGRLLTGELLAILGPSGAGKSSLLSVLG 98
                577889*****************98775 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
   PF13481.1 162 nsdvgaviaalerlakrtgaavllvhHt 189
                 +s +++v++al + ++  +a ++l +H 
  MMETSP0890-20130614|5852_1 225 ASRAYSVLRALAQRCTDDNAGIMLSIHQ 252
                 4556799999999999999999988885 PP

>> PF05858.7  Bovine immunodeficiency virus surface protein (SU)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.2e-05     0.044     230     275 ..     390     438 ..     379     450 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
   PF05858.7 230 gslslmwgmllveigrrltrrewsvsrvvvilli...sfswgmyvskve 275
                  sl+++wg l+ ++gr   +r    + +v i++     fswg   ++v 
  MMETSP0890-20130614|5852_1 390 LSLASIWGWLFFDVGRTAKKRGRHAADIVSIIFFfvaQFSWGPAFQQVT 438
                 5899*****************99999988776532237****8777764 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   9.3e-05      0.13      23      40 ..      77      94 ..      73      98 .. 0.86
   2 ?   -1.8   0.0       1.5     2e+03      45      61 ..     265     281 ..     263     282 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.3e-05
   PF13555.1 23 gkntlltGasGsGKSTll 40
                g+  ++ G+sG+GKS+ll
  MMETSP0890-20130614|5852_1 77 GELLAILGPSGAGKSSLL 94
                556789**********98 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.5
   PF13555.1  45 tlLvpakkvafNkaana 61 
                  l+ p++++ +N  a a
  MMETSP0890-20130614|5852_1 265 LLMAPGGRIVYNGKASA 281
                 45667779****88765 PP

>> PF01818.12  Bacteriophage translational regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       6.8   9.4e+03      69      90 ..     162     183 ..     158     187 .. 0.77
   2 ?   11.9   0.0   7.7e-05      0.11      49      84 ..     302     337 ..     301     361 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6.8
  PF01818.12  69 errnsiaklledwglieivdee 90 
                 er ++i ++++  gl +++d++
  MMETSP0890-20130614|5852_1 162 ERNKRINTVIKALGLDSVLDSK 183
                 6788888888888888888776 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 7.7e-05
  PF01818.12  49 hfkellkldGrqvelteedverrnsiaklledwgli 84 
                 hf e++ ldG + + +++ ++++ +ia l++ w+  
  MMETSP0890-20130614|5852_1 302 HFIEIVSLDGEDDDTSKDMTTKKIQIAALVQAWNAY 337
                 9********************************965 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.16       2      32 ..      80     107 ..      79     190 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
                 E--B--TT---HHHHHHHHHH..STEEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaer..lglpvlsldd 32 
                  ai Gp+G+GKs+l   L  r  lg++      
  MMETSP0890-20130614|5852_1  80 LAILGPSGAGKSSLLSVLGSRpqLGVD-----G 107
                 5899**************998443333.....3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:01.61
# Mc/sec: 686.16
//
Query:       MMETSP0890-20130614|5854_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   17.1   0.6     0.0016   16.6   0.1    1.4  2  PF02480.11 Alphaherpesvirus glycoprotein E
     0.0071   15.4   0.1     0.0092   15.1   0.1    1.1  1  PF05795.6  Plasmodium vivax Vir protein
  ------ inclusion threshold ------
      0.042   13.9   0.0      0.072   13.1   0.0    1.4  1  PF13908.1  Wnt and FGF inhibitory regulator
      0.044   13.7   0.5       0.56   10.1   0.0    2.2  2  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
      0.056   12.7   0.0       0.12   11.6   0.0    1.6  1  PF04478.7  Mid2 like cell wall stress sensor
      0.061   13.1   0.2        0.2   11.5   0.2    1.8  1  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
       0.17   10.0   2.9        0.2    9.7   2.0    1.3  1  PF09726.4  Transmembrane protein
       0.24   10.5   5.5       0.41    9.7   3.8    1.2  1  PF05285.7  SDA1
       0.82    7.3  14.2       0.95    7.1   9.8    1.2  1  PF05110.8  AF-4 proto-oncoprotein
        2.6    6.8  12.4       0.21   10.4   3.0    2.0  2  PF09073.5  BUD22


Domain annotation for each model (and alignments):
>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.15   2.1e+02     412     430 ..     121     144 ..     107     160 .. 0.38
   2 !   16.6   0.1   1.2e-06    0.0016     330     425 ..     142     233 ..     129     239 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.15
  PF02480.11 412 eesedeevdvdeeeeasd.....k 430
                 +++++e++++d+ +++ +     +
  MMETSP0890-20130614|5854_1 121 GNTNGEDSSSDSSDSSGSfdssgS 144
                 333333333333332222222210 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.2e-06
  PF02480.11 330 dppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye.krlspfspvYtsLPtnel.vedvsedeesedeevdvdeee 425
                 +++  + +s+++ +++++++   +l+++vl++a+  +++l+l+++c  k+    a++ ++ ++  pv    P++ +        e+++ ++ +vdeee
  MMETSP0890-20130614|5854_1 142 SGSSDSSSSDSSDSSSSSKKGNHILIISVLCFALGAILALILAWCCRSKKQPVIASAvSTEEDDVPVMLAKPVDAKkD------EKDKSNDNNVDEEE 233
                 5556666777777788888899999******************************99666666777777767766631......22222222233333 PP

>> PF05795.6  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.7e-06    0.0092     228     328 ..     115     234 ..      85     238 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.7e-06
   PF05795.6 228 aellekekaeletsskteaarsesgtkndaspessasspsslestssektsdpfrniv.aaavlglgifliffilyk.....................lgsslrkkrgkkkkiiennyeeeye 328
                 +++l+++++++e ss+   + s    + d+s +s++ss++s++s+ss k+++ ++ i+ +  +lg+++ li+  +++                     l +++  k+ +k k+  nn  ee e
  MMETSP0890-20130614|5854_1 115 ETSLGDGNTNGEDSSSDSSDSS---GSFDSSGSSDSSSSDSSDSSSSSKKGNHILIISvLCFALGAILALILAWCCRskkqpviasavsteeddvpvmLAKPVDAKKDEKDKSNDNNVDEEEE 234
                 2222222222222222222222...223455566677777777777777777777777799999*********9999******************9999999999999999988888888766 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.3e-05     0.072      63     139 ..     150     218 ..     125     237 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.3e-05
   PF13908.1  63 gkfrkpvedptkdlkvvlivsiilivv.fivvliviftcskcvlekavrrqrpvvtsassttvqatplpqeeskapsy 139
                 ++  +++ +  k+    li+s++++ + +i++li++++    ++ k    ++pv  sa+st     p    + +++++
  MMETSP0890-20130614|5854_1 150 SDSSDSSSSSKKG-NHILIISVLCFALgAILALILAWC----CRSK----KQPVIASAVSTEEDDVPVMLAKPVDAKK 218
                 2444455555555.778899999987636677777666....4666....6788888887777666666655553333 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00041      0.56      29      82 ..     131     183 ..     117     197 .. 0.56
   2 ?    0.6   0.8      0.38   5.2e+02      16      43 ..     205     230 ..     196     242 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00041
   PF06024.7  29 ennkaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyviy 82 
                 ++++ + + +++ +++++++++++s ++  ++ n +li+ + ++++  +l +i+
  MMETSP0890-20130614|5854_1 131 DSSDSSGSFDSSGSSDSSSSDSSDS-SSSSKKGNHILIISVLCFALGAILALIL 183
                 2222222222333333333333344.4556666777777777778877777665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.38
   PF06024.7  16 yIPlkLalnddedennkaenkkntksaa 43 
                  +P+ La   d+++++k++   n++++ 
  MMETSP0890-20130614|5854_1 205 DVPVMLAKPVDAKKDEKDKS--NDNNVD 230
                 56666664332222222211..111111 PP

>> PF04478.7  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.6e-05      0.12      27      86 ..     141     197 ..     113     200 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.6e-05
   PF04478.7  27 ytptataspskkskehGLskknkniviGcvvGigvPlllvilvliyifCikekrtdfids 86 
                  + ++ +s+s+ s ++  skk  +i+i  v   +     +il+li   C ++k+   i s
  MMETSP0890-20130614|5854_1 141 SSGSSDSSSSDSSDSSSSSKKGNHILIISVLCFAL---GAILALILAWCCRSKKQPVIAS 197
                 455555566666788899999999*9988876664...567889999******9988876 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00014       0.2      24      77 ..     135     187 ..     121     194 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
   PF09716.5  24 ssnsveakkagtskalkkiddelekkkknkKillisaiatalallvggalGlgi 77 
                 ss s+ ++++++s + ++ d + + k k + il+is++  al ++++ +l    
  MMETSP0890-20130614|5854_1 135 SSGSFDSSGSSDSSSSDSSDSSSSSK-KGNHILIISVLCFALGAILALILAWCC 187
                 56666666776888999999999999.9**************999999987655 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.0   0.00015       0.2     330     388 ..     116     160 ..       8     239 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00015
   PF09726.4 330 ssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssg 388
                 +s  ++++++              + s++  + ++gs  ss +++++s d   s+sss+
  MMETSP0890-20130614|5854_1 116 TSLGDGNTNG--------------EDSSSDSSDSSGSFDSSGSSDSSSSDSSDSSSSSK 160
                 1111111111..............11111111222222222222222222221111111 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.8    0.0003      0.41      92     175 ..     114     233 ..     106     239 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0003
   PF05285.7  92 eseedddeeWdv.dsdeededeDeegewvdvesdeeeessDsedeeeesee.................................................eeeeeesekkkkeesdeekseeeeeeaaeeeeee 175
                 e+++  d++     +d++++++D++g + +  s+ +  ssDs d +++s++                                                             +  d++k+e++++++++  eee
  MMETSP0890-20130614|5854_1 114 EETSLGDGN--TnGEDSSSDSSDSSGSFDSSGSS-DSSSSDSSDSSSSSKKgnhiliisvlcfalgailalilawccrskkqpviasavsteeddvpvmlA-----------KPVDAKKDEKDKSNDNNVDEEE 233
                 222222333..22467788888876666655554.55788888888877778889*********************9999999999999765444444431...........2222222222222222222222 PP

>> PF05110.8  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.8    0.0007      0.95     424     467 ..     113     156 ..      34     165 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0007
   PF05110.8 424 sapsskpepaasasdsSsSeSeSeSsSgSDSesESSssdSEene 467
                 +  +s +++ ++ +dsSs +S+S  s +S   s+SSssdS ++ 
  MMETSP0890-20130614|5854_1 113 EEETSLGDGNTNGEDSSSDSSDSSGSFDSSGSSDSSSSDSSDSS 156
                 23333444444444444433333333333333444444442222 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.0   0.00015      0.21     215     264 ..     110     161 ..      30     164 .. 0.77
   2 ?    1.7   0.7     0.068        93     179     200 ..     214     235 ..     190     241 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00015
   PF09073.5 215 ssdeesgeeq..desddeeesesesesdeedeedsdsrsvsdseeseppskk 264
                 s +ee+ +    + + +++ s+s+ +s + d++ s+++s+sds++s+ +skk
  MMETSP0890-20130614|5854_1 110 SNEEEETSLGdgNTNGEDSSSDSSDSSGSFDSSGSSDSSSSDSSDSSSSSKK 161
                 3444444333444444444444444455556666666666666666666665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.068
   PF09073.5 179 edssddeeseeddsdsdeeees 200
                  d+++de+++++d++ deeee+
  MMETSP0890-20130614|5854_1 214 VDAKKDEKDKSNDNNVDEEEEA 235
                 4556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       992  (0.0725571); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.46s 00:00:01.28 Elapsed: 00:00:00.79
# Mc/sec: 737.11
//
Query:       MMETSP0890-20130614|5857_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-11   41.2   6.3    1.2e-10   40.7   4.3    1.2  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    3.9e-07   29.6   7.8    5.8e-07   29.1   5.4    1.2  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.3e-05   24.7   7.1    1.9e-05   24.1   4.9    1.3  1  PF13639.1  Ring finger domain
     0.0056   16.1   8.3     0.0086   15.5   5.7    1.3  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   4.3   3.4e-14   1.2e-10       2      49 ..     126     174 ..     125     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 3.4e-14
   PF13920.1   2 kktCvvClereadvlllp.CgHlclCeeCaerllkrkkkCpiCrspies 49 
                 ++ C++C+e+ a+++++  C+H  +C++C+ ++  ++ +Cp+Cr++i +
  MMETSP0890-20130614|5857_1 126 SDLCCICFEKGANAVFVNgCNHGGICYSCSIDVFITSGSCPFCRTDIAQ 174
                 578*******999888855**************************9976 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   5.4   1.7e-10   5.8e-07       2      46 .]     126     170 ..     125     170 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.7e-10
   PF13923.1   2 rfsCpiCleelenpviltpCgHl.yCkkCieqwlekskkkCPiCrn 46 
                 ++ C iC+e+  n+v++  C+H  +C++C  +++ + + +CP+Cr+
  MMETSP0890-20130614|5857_1 126 SDLCCICFEKGANAVFVNGCNHGgICYSCSIDVFIT-SGSCPFCRT 170
                 678*************99****88******999999.9******96 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   4.9   5.6e-09   1.9e-05       2      45 ..     128     170 ..     127     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.6e-09
   PF13639.1   2 eCaiCldelsegeevvrlpCgHv.fHeeCldewlrssnsCPlCrk 45 
                  C+iC+++   +++v +  C+H  ++++C  + + +s+sCP Cr+
  MMETSP0890-20130614|5857_1 128 LCCICFEKG--ANAVFVNGCNHGgICYSCSIDVFITSGSCPFCRT 170
                 5******97..67888888***77*****8888888********8 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   5.7   2.5e-06    0.0086       1      41 []     129     168 ..     129     168 .. 0.97

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-06
                 -TTTSSS-SSEE.BSCTS-E.E-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                 C iC+e+ ++++ +  C+H  +C++C   +    ++ +CP C
  MMETSP0890-20130614|5857_1 129 CCICFEKGANAVFVNGCNHGgICYSCSIDVFI--TSGSCPFC 168
                 ********************9***********..8899***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.53
# Mc/sec: 1039.93
//
Query:       MMETSP0890-20130614|5859_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-34  116.8   0.5    7.8e-34  116.5   0.3    1.1  1  PF00133.17 tRNA synthetases class I (I, L, M and V)
    1.5e-08   33.6   1.1    2.4e-08   32.9   0.0    1.8  2  PF09334.6  tRNA synthetases class I (M)
    0.00068   18.4   0.0      0.001   17.8   0.0    1.2  1  PF00750.14 tRNA synthetases class I (R)
  ------ inclusion threshold ------
      0.031   12.8   0.0      0.059   11.9   0.0    1.4  1  PF00749.16 tRNA synthetases class I (E and Q), catalytic domain


Domain annotation for each model (and alignments):
>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.3   2.3e-37   7.8e-34       2     110 ..      77     190 ..      76     191 .] 0.93

  Alignments for each domain:
  == domain 1    score: 116.5 bits;  conditional E-value: 2.3e-37
                 HHHHHHHCTH..HHHHHHHC--.--B--EE----B---------HHHHHHHHHHHHHHHC---B-------B----HHHH.HHHC-.---ST.....TS-CHHHHHHHCHHHHH CS
  PF00133.17   2 ilekWeeedl..fkkslekeke.kekFvlvdgPPnatGslHiGhalaktlkdivirykrmkGkdveyvpGwDhhGlpiea.kvekklgkkek.kereklgrekfrekvrewkae 110
                 ++e+We+++   +++sl+++k+  +kFv+v++PPn+tGslH+Ghal+ +++d ++r++rm+G  ++yvpG+Dh+G+++++  vek+l+k++   +r++lgre+f+++ ++wk++
  MMETSP0890-20130614|5859_1  77 WQEWWEKSGWygYEASLAQKKGaDKKFVMVIPPPNVTGSLHLGHALTAAIEDSLARWHRMRGDATLYVPGTDHAGIATQSgGVEKQLAKQNPpVSRHDLGREQFINQAWKWKEQ 190
                 89*******95668888999998999*****************************************************846*****99986369****************986 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4      0.19   6.7e+02     266     278 ..      71      83 ..      59      87 .. 0.72
   2 !   32.9   0.0   6.9e-12   2.4e-08       8      61 ..     110     163 ..     103     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.19
                 ---TTTTHHHH-- CS
   PF09334.6 266 ageeekfkkfwak 278
                 ++ e++++++w+k
  MMETSP0890-20130614|5859_1  71 TDVEKNWQEWWEK 83 
                 456899*****43 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 6.9e-12
                 -B-----B-------HHHHHHHHHHHH---EEEEE---B----HHHHHHHH--- CS
   PF09334.6   8 pYvngkpHlGhlystiaaDvlarykrlrgeevlfvtgtDehGtkielkAekegl 61 
                 p v g++HlGh++++ + D lar++r+rg+ +l+v gtD+ G ++++   +++l
  MMETSP0890-20130614|5859_1 110 PNVTGSLHLGHALTAAIEDSLARWHRMRGDATLYVPGTDHAGIATQSGGVEKQL 163
                 66899*************************************999876666555 PP

>> PF00750.14  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.1e-07     0.001      14      60 ..      95     141 ..      89     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.1e-07
  PF00750.14  14 satkekkkvvvefsspNiakeiHvGhlRstiiGdalsrlleflGykv 60 
                 +++ ++kk v+    pN+++ +H+Gh   ++i d+l+r   + G ++
  MMETSP0890-20130614|5859_1  95 QKKGADKKFVMVIPPPNVTGSLHLGHALTAAIEDSLARWHRMRGDAT 141
                 566777888888899***********************999998765 PP

>> PF00749.16  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05     0.059       7      32 ..     109     134 ..     104     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
                 --------B---HHHHHHHHHHCCCT CS
  PF00749.16   7 aPsPtGyLHiGhaktallnyllAkka 32 
                 +P+ tG LH+Gha ta ++  lA+ +
  MMETSP0890-20130614|5859_1 109 PPNVTGSLHLGHALTAAIEDSLARWH 134
                 99***************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 750.33
//
Query:       MMETSP0890-20130614|5858_1  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-16   57.4  59.0    2.7e-06   26.7   2.4    6.7  6  PF07699.8 GCC2 and GCC3
     0.0002   20.8  44.5     0.0071   15.9   1.2    6.2  6  PF07562.9 Nine Cysteines Domain of family 3 GPCR


Domain annotation for each model (and alignments):
>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   2.6    0.0013       8.7      14      39 ..     454     476 ..     440     482 .. 0.59
   2 !   22.9   4.0     6e-09   4.1e-05       9      43 ..     481     516 ..     471     520 .. 0.80
   3 !   26.7   2.4   3.9e-10   2.7e-06       1      42 [.     523     562 ..     523     566 .. 0.86
   4 !   23.5   5.1   3.9e-09   2.7e-05       9      48 .]     573     611 ..     565     611 .. 0.93
   5 ?    2.2   0.3     0.018   1.2e+02       3      33 ..     616     629 ..     612     641 .. 0.59
   6 !    5.4   0.9    0.0018        12      10      37 ..     689     713 ..     683     716 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0013
   PF07699.8  14 CprGtYkneegqkkCiaCppgttTsk 39 
                 C++G+Y +    +kC++Cppg++ ++
  MMETSP0890-20130614|5858_1 454 CGIGSYFD---GTKCTSCPPGSYSDI 476
                 55555532...335666666655444 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 6e-09
   PF07699.8   9 kkCepCprGtYkneegqkkCiaCppg.ttTskkgsk 43 
                  +C +C+ GtY++e+g ++C++C+++   Ts++g++
  MMETSP0890-20130614|5858_1 481 FTCKLCEPGTYQSESGLNSCLSCGSTeIATSEEGAT 516
                 69***********************95567888887 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 3.9e-10
   PF07699.8   1 GtylkkgnkkCepCprGtYkneegqkkCiaCppgttTskkgs 42 
                 G yl  +++ C+ C+ GtY+++ +  +C++Cppg +Ts  ++
  MMETSP0890-20130614|5858_1 523 GSYL--EDSVCQICGPGTYSDTINAESCQKCPPGWYTSNDHE 562
                 6677..4557************************99998765 PP

  == domain 4    score: 23.5 bits;  conditional E-value: 3.9e-09
   PF07699.8   9 kkCepCprGtYkneegqkkCiaCppgttTskkgsksesdC 48 
                 ++C pCp ++Y+n + +  C +Cp+   Ts +gs+s ++C
  MMETSP0890-20130614|5858_1 573 STCLPCPADSYSNDTTSALCMPCPDR-LTSDEGSTSCDKC 611
                 68************************.9********9999 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.018
   PF07699.8   3 ylkkgnkkCepCprGtYkneegqkkCiaCpp 33 
                 y++ ++                  +C++C +
  MMETSP0890-20130614|5858_1 616 YYDDRDG-----------------SCQQCKD 629
                 4444444.................5555555 PP

  == domain 6    score: 5.4 bits;  conditional E-value: 0.0018
   PF07699.8  10 kCepCprGtYkneegqkkCiaCppgttT 37 
                  C  C+ G+Y +    ++C +C +  +T
  MMETSP0890-20130614|5858_1 689 LCAQCQSGYYLSG---DNCSECKQSYVT 713
                 5999999999653...447777777776 PP

>> PF07562.9  Nine Cysteines Domain of family 3 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.013        92      31      54 .]     454     474 ..     447     474 .. 0.61
   2 !   13.6   2.9   5.4e-06     0.037       7      52 ..     466     507 ..     462     509 .. 0.90
   3 !   10.9   1.0   3.7e-05      0.26      28      51 ..     531     554 ..     530     557 .. 0.92
   4 !   15.9   1.2     1e-06    0.0071      27      51 ..     574     598 ..     573     601 .. 0.92
   5 ?   -0.1   1.8       0.1     7e+02      28      50 ..     608     629 ..     606     632 .. 0.83
   6 !    3.6   1.7    0.0071        49      28      52 ..     690     711 ..     689     713 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.013
   PF07562.9  31 CpegeisnetdettCkkCpeeqws 54 
                 C  g++    d t+C++Cp +++s
  MMETSP0890-20130614|5858_1 454 CGIGSYF---DGTKCTSCPPGSYS 474
                 4444443...56799999988765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 5.4e-06
   PF07562.9   7 epCkpGqrkkvqkgkpkCCfdCvpCpegeisnetdettCkkCpeeq 52 
                 ++C+pG +  +  g+    f+C  C+ g++++e++  +C +C +++
  MMETSP0890-20130614|5858_1 466 TSCPPGSYSDI-IGMR---FTCKLCEPGTYQSESGLNSCLSCGSTE 507
                 48999999988.9999...***********************9875 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 3.7e-05
   PF07562.9  28 CvpCpegeisnetdettCkkCpee 51 
                 C  C  g++s++ ++ +C+kCp +
  MMETSP0890-20130614|5858_1 531 CQICGPGTYSDTINAESCQKCPPG 554
                 9**********99*********87 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 1e-06
   PF07562.9  27 dCvpCpegeisnetdettCkkCpee 51 
                 +C+pCp+ ++sn t +  C++Cp++
  MMETSP0890-20130614|5858_1 574 TCLPCPADSYSNDTTSALCMPCPDR 598
                 6**********************87 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.1
   PF07562.9  28 CvpCpegeisnetdettCkkCpe 50 
                 C +C e  + + +   +C++C++
  MMETSP0890-20130614|5858_1 608 CDKCVELYYYDDR-DGSCQQCKD 629
                 99***99999955.559****85 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.0071
   PF07562.9  28 CvpCpegeisnetdettCkkCpeeq 52 
                 C +C+ g +++    ++C +C++++
  MMETSP0890-20130614|5858_1 690 CAQCQSGYYLSG---DNCSECKQSY 711
                 ***********4...4899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.69u 0.40s 00:00:02.09 Elapsed: 00:00:01.31
# Mc/sec: 1962.82
//
Query:       MMETSP0890-20130614|5862_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   14.2   0.4      0.022   14.2   0.3    1.5  2  PF11313.3  Protein of unknown function (DUF3116)
      0.088   12.3   1.5      0.089   12.3   1.1    1.1  1  PF01067.17 Calpain large subunit, domain III


Domain annotation for each model (and alignments):
>> PF11313.3  Protein of unknown function (DUF3116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.76   5.2e+03      68      71 ..      10      13 ..       4      26 .. 0.53
   2 ?   14.2   0.3   3.2e-06     0.022      13      46 ..      53      86 ..      47     103 .] 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.76
   PF11313.3 68 YsiT 71
                Y+ T
  MMETSP0890-20130614|5862_1 10 YTTT 13
                3322 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.2e-06
   PF11313.3 13 LlvvksknakiedlsievldfegarnftknElLl 46
                L+++k+k+ ki+dl ++ +d+e+a   t+nE   
  MMETSP0890-20130614|5862_1 53 LSIIKKKERKINDLKKKAMDIEKASMETRNEKEA 86
                7899**************************9544 PP

>> PF01067.17  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   1.3e-05     0.089      19      96 ..      15      98 ..       1     103 [] 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
  PF01067.17 19 GcrnfeetfltNP...........qfrlslkepddedekctvliaLmqknrrkkrkkgeenltigfavykvkkkekeldkeffkknksi 96
                  ++ ++tfl++P           +++ +l+++ +     ++ +++++k++rk +  +++ + i+ a ++  ++++ l k++  +++++
  MMETSP0890-20130614|5862_1 15 YYKKQKDTFLKEPrklcekrkegiKYHYELYDQAK-----NISLSIIKKKERKINDLKKKAMDIEKASMETRNEKEALLKKMELFKQQK 98
                5567788******999999999999999***9997.....6*****************************9666666666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1939  (0.141823); expected 273.4 (0.02)
Passed bias filter:                      660  (0.0482738); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.44s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 257.11
//
Query:       MMETSP0890-20130614|5860_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.6   2.1       0.11   12.3   0.1    2.1  2  PF07934.7 8-oxoguanine DNA glycosylase, N-terminal domain
       0.07   13.0   0.1       0.15   11.9   0.1    1.6  1  PF08946.5 Osmosensory transporter coiled coil


Domain annotation for each model (and alignments):
>> PF07934.7  8-oxoguanine DNA glycosylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.7e-05      0.11      47     109 ..      71     138 ..      31     144 .. 0.71
   2 ?    2.3   0.1      0.02   1.4e+02      58      99 ..     178     217 ..     135     222 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
   PF07934.7  47 dtleyralase.....asseeakeedteellrdYfnLdvdleelyeewskkdplfkkaadkfrGiRll 109
                 +t+ +++l +e     +s++++ +e+++ l+++Y++L+++++ + e+++k +++ ++++++   +R +
  MMETSP0890-20130614|5860_1  71 ETIVWTRLGDEvyhilESDALTVDESDALLMNEYLKLEISIQGIKESMQKLQKKQRRSIRRAPRLRST 138
                 33333333333666666999****************************99888777777776666655 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.02
   PF07934.7  58 asseeakeedteellrdYfnLdvdleelyeewskkdplfkka 99 
                  +s e   +++ e+lr  f+Ld  l++ ++ + +kd+ +k++
  MMETSP0890-20130614|5860_1 178 GDSFEIFPNSELEFLR--FRLDATLQSYLNAVDDKDKDIKTQ 217
                 5566666666667776..99*******999999999999865 PP

>> PF08946.5  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.2e-05      0.15       5      45 ..      95     135 ..      92     136 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.2e-05
   PF08946.5   5 EAkElLqehhdnIEqkIedideqIaeLekKRqkLvdqHPri 45 
                 E   lL + + + E  I  i e  + L+kK+ + + + Pr+
  MMETSP0890-20130614|5860_1  95 ESDALLMNEYLKLEISIQGIKESMQKLQKKQRRSIRRAPRL 135
                 667799999***********************999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.88
# Mc/sec: 607.26
//
Query:       MMETSP0890-20130614|5861_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.2   0.0      0.066   12.4   0.0    1.3  1  PF00078.22 Reverse transcriptase (RNA-dependent DNA polymerase)
       0.09   12.2   0.0       0.17   11.3   0.0    1.4  1  PF12000.3  Gkycosyl transferase family 4 group


Domain annotation for each model (and alignments):
>> PF00078.22  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.7e-06     0.066      23      81 ..     385     444 ..     374     454 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.7e-06
  PF00078.22  23 qkllakrLeeileplfsepshgfrpgrslht..........ikalnklkgskwllklDlkkaFdsiphd 81 
                   l+++         +s+    f+++r +++            ++++l++   ++++D++kaFd++ph 
  MMETSP0890-20130614|5861_1 385 TNLVTS---------LSDTIELFESNRCIISvrlrphpqapFFNTKQLRQIYDWMTTDCSKAFDQVPHL 444
                 555555.........444444455555555555555555663445689999****************95 PP

>> PF12000.3  Gkycosyl transferase family 4 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.5e-05      0.17      53      88 ..     221     257 ..     214     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
   PF12000.3  53 vlraaeqLkkegfkPdvivaHsGwGeslflkd.vwPd 88 
                  +++a+qL +e+ ++d+i+aH+ +G  + l+d ++P+
  MMETSP0890-20130614|5861_1 221 TAQVAQQLLDENNQIDLILAHAVYGGKTGLRDeIIPS 257
                 6899*********************999998724565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:01.10
# Mc/sec: 1128.47
//
Query:       MMETSP0890-20130614|5867_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-60  203.8   0.0    4.6e-60  203.0   0.0    1.4  1  PF04857.15 CAF1 family ribonuclease
     0.0015   17.1   0.0     0.0023   16.5   0.0    1.2  1  PF09710.5  Treponema clustered lipoprotein (Trep_dent_lipo)


Domain annotation for each model (and alignments):
>> PF04857.15  CAF1 family ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.0   6.7e-64   4.6e-60       1     261 [.      64     290 ..      64     291 .. 0.97

  Alignments for each domain:
  == domain 1    score: 203.0 bits;  conditional E-value: 6.7e-64
                 EEE-TTTHHHHHHHHHHHTTTS-EEE---B------------SSSHHHHHHHHHHHHHHS---EE--EEE.-------TT-S.EEEEE--.--TTTS---HHHHHHHHH----HHHHHH----HHHHH......HHH------S-T.T..-EEEES----HHHHHHHHHH-.---SSHHHHHHHHHHHSSSEEEHHHHHT..T....--HHHHHHTT---.......................---.TT----HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04857.15   1 teVnrsNfkeelkeirqaiksadfvaiDtEftGlvakaelsrkdtlderYealrknakslkilqlGlalfkkedskltdsve.ispfnfkefskeedfsstsslefLaeqgfdFnklireGveylrfneeeekkqllgvrllfdeiikskktvvghnglyDllylykllyg.dLPesldeFkkkltelFprvyDtkylaetnegssedlqelaeelkadrnekkktksketqnfieeknnmlivgeglheAGsDslltallfi 261
                 ++V++s ++ee+++ir++++++++va+DtEf+G+vak+++    ++ ++Y++l++n++ lk++qlG+++  +e++k ++s    ++fnf+ f+ +ed+++++s+++L+e+g+dF ++  eG++++rf       +l+++++l++ + +   ++++++++yD++yl+kll++  LP++ + F++ l+ +Fp+++D+k+l++  +g + +lq++ae+lk++r                       vg   h+AGsDs+lt  +f+
  MMETSP0890-20130614|5867_1  64 RDVWASTLDEEMSRIRELVERYPYVAMDTEFPGVVAKPIGD-AYSSGYQYQTLQCNVDLLKVIQLGMSFC-DEKGKTPESGCfCYQFNFR-FDLNEDMYAEDSIQLLKESGIDFARHASEGIDVHRFG------ELVMMSGLVLTE-D--IKWISFHSGYDFGYLIKLLTCtTLPSDEQAFFDLLHIYFPTLFDIKLLMSCVDGLHGGLQRVAEDLKVER-----------------------VGP-MHQAGSDSMLTNATFF 290
                 58*************************************97.78899***********************.9999999998889******.*************************************......9******99999.6..89********************************************************************.......................999.***********99998 PP

>> PF09710.5  Treponema clustered lipoprotein (Trep_dent_lipo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.3e-07    0.0023      98     176 ..     108     185 ..      92     195 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.3e-07
   PF09710.5  98 igiDnlaqqknlevikvekdkefiyCkqkataknGkeliydvkykwykiekkflnlkyellseknivkineelieeqvh 176
                 +g  +++ q n++++kv + +    C  k ++++ + + y+  ++++  e ++++ + +ll+e  i   ++  +   vh
  MMETSP0890-20130614|5867_1 108 SGYQYQTLQCNVDLLKVIQLGM-SFCDEKGKTPESGCFCYQFNFRFDLNEDMYAEDSIQLLKESGIDFARHASEGIDVH 185
                 5667777888******999887.89****************************************99999988877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.99
# Mc/sec: 985.17
//
Query:       MMETSP0890-20130614|5868_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  112.3   0.0    1.7e-30  105.9   0.0    3.0  1  PF00202.16 Aminotransferase class-III
  ------ inclusion threshold ------
       0.13   11.0   0.0       0.19   10.5   0.0    1.2  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   2.5e-34   1.7e-30       4     319 ..     100     418 ..      97     425 .. 0.88

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 2.5e-34
                 EEETTEEEETT--EEEBTTHHHHTT------.HHHHHHHHHHHCC-S---TTTCEEHHHHHHHHHHHHHS-----EEEEE----HHHHHHHHHHH...SS.HHCT--EEEEETTT-----HHCCCHT--TTTT-------TTEEEE-TT-TTC.-BHHHHHHHHHHHHHHHHTCCCEEEEEE-S..EE-----EE--CCCHHHHHHHHHHCT-EEEEE-S----------SGGGG-----SEEEE-CTC------EEEEE-HHHHTTSHH--........-SSTT-HHHHHHHHHHHHHH...HHTTHHHHHHH---TTTHHHH.HHHCC CS
  PF00202.16   4 kakGvyltdvdGrrylDflsgiavvnlGhah.pkiveavkeqadklshvsfralttepalklaeklaeltPkgldkvflansGseanetAlKlarayekkkgatektkiiafegafhGrtlgalsvtkskkykklfgpllpgveilpypdlka.aeeekalleeaerlikevkkeeiaAvivEP..iqgegGvvvasegflaklreickkhnvllivDEvqtGfGrtGklfAaehagvepDlmtlaKaltgGlplsavlataevmqafqpgs......hgttfggnplacavalavlevi...eeeellenaqekgerlkkgLe.eLkek 319
                  ++G  l dvdG   +D+  ++ v + G+   ++ ++ + +  ++l      +  ++ + ++  +l+++   + ++v + +sG+ea++ A++l+r       +t+++ i++f+ga+hG   g    +  ++ ++ +  +l++++ + +  ++a ++e +a+l + ++  +  k +    v++ +     + G   a +++l++lre c+k +v l +DEv tGf r     A e+++v+ D+++ +K+l+gGl +  v ++ ++m++f p+         +tf + pl  a++++ l+ +   + ++l+++++++ +++++ L+ eL ek
  MMETSP0890-20130614|5868_1 100 SSRGPELIDVDGVASVDVSGSYGVNVCGYDAyKRFLDQAWKNSKALGPNV-LGPIHPIINRVLPRLKAIA--KKEEVSFHMSGTEAVMCAVRLCR------FNTKRKLIVQFAGAYHGWWDGVQP-GPGSERANNDVLYLKDMSSASLAVIRArNDEIAAVLVSPLQGLNPGKPPPSDLVLLDAkaRETAKGSKLAYKQWLHELRECCTKAEVPLMFDEVYTGF-RMAPGGAQEYYEVTADVVVYGKTLGGGLAVGVVCGPSHLMRRFDPTRplrvayVIGTFAAAPLTLAAMAEFLDWLdkaKADNLYAKMEAATDQFVNDLNkELVEK 418
                 678999***********************642667777777777777744.7888999999999999999..99*********************......*****************9998887.77888888888888999999999998856677788888888888888888888999986567889*********************************.*******************************************9999999999889*******999999988766111667899999999999999999777765 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.8e-05      0.19     168     243 ..     288     356 ..     280     444 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-.EEEEE--CCCCTBGGG----EEEE-HHHHHH CS
  PF00155.16 168 eeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsql 243
                 + l++l + ++k ++ l++De+Y gf + +        +++e+ + ++ v  ++K +G  G+ vG ++g +++ +  
  MMETSP0890-20130614|5868_1 288 QWLHELRECCTKAEVPLMFDEVYTGFRMAP-------GGAQEYYEvTADVVVYGKTLG-GGLAVGVVCGPSHLMRRF 356
                 446899999*******************94.......444555444333444567776.366668888877554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.38s 00:00:01.30 Elapsed: 00:00:00.83
# Mc/sec: 1547.53
//
Query:       MMETSP0890-20130614|5866_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-23   81.5   0.0    1.4e-22   79.8   0.0    2.0  2  PF04607.12 Region found in RelA / SpoT proteins
    5.9e-08   32.4   0.0    2.4e-07   30.4   0.0    2.1  1  PF13328.1  HD domain
  ------ inclusion threshold ------
      0.039   13.5   0.5        5.3    6.7   0.0    3.0  2  PF08606.6  Prp19/Pso4-like


Domain annotation for each model (and alignments):
>> PF04607.12  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0     3e-26   1.4e-22       1     114 [.     371     511 ..     371     513 .. 0.89
   2 ?   -2.9   0.0       1.3     6e+03      48      80 ..     563     594 ..     547     618 .. 0.55

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 3e-26
                 -----HHHHHHHHHH--............-CCCCCCC-S--E-EEEEESS.............TTHHHHHHHHHHT-SSSEEEEEEEES---------EEEEEE------EEEEEEEEEEEHHHHHHHH..HHHHHHHHC- CS
  PF04607.12   1 sRvKsiysiieKlrrkg............kveekfeeitDligiRvivef.............kddcykvlelvkklwdpkpkrfkdyiaepkengYrslHtvveaekgeekvlvEiQiRtiemeawae..iehhlrYkek 114
                 +R+K + si++K ++ +              ++ +    D i++Rvi++              +  c+++lelv++ w  +p+r kdyi +pk+ngY+slHt+v +  +  ++++E+QiRt +m+++ae   ++h+ Y ++
  MMETSP0890-20130614|5866_1 371 HRLKAPWSIWKKQNKLQtkmaageliqpfLDTQGILYPLDTIALRVILDPqnsndsqakqlhgEALCRRALELVHDSWPAVPDRIKDYIMQPKKNGYQSLHTTVMMRLHGVSIPFEVQIRTKDMHSVAEfgEAAHVFYSCG 511
                 699*******99888777889999998773344555556*********7667999*************************************************99999999*****************998999999865 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.3
                 HHHT-SSSEEEEEEEES---------EEEEEE...- CS
  PF04607.12  48 lvkklwdpkpkrfkdyiaepkengYrslHtvv...e 80 
                 ++ ++  p+ +r+  y    k+n   sl t+    +
  MMETSP0890-20130614|5866_1 563 IIVEQEGPHRRRSTSY----KRNALDSLDTTTslaS 594
                 3334555555556666....7777777777774442 PP

>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.3e-11   2.4e-07       3     152 ..     131     305 ..     129     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.3e-11
   PF13328.1   3 elAaklha.qqrkgtgepylshalevaailael..gldeetiiAalLhdvvedtett.eeirerfGeevarlVegvtelkrlekl...............dtaerk............eeqleelrkmLlamaedirvvlikladrlhnlrslaaakrekrrdvaretldvyaplanrlgi 152
                 +l +++     + ++ + +l+ +++va+ +a+   g d ++i++a+L  + +  +   + ++++ G + a+l   +  l++l+ l               +    +            ++++ +lr+mL+a+a d+r + + l  rl +l +   ++   +  + r++ldvyapla r g+
  MMETSP0890-20130614|5866_1 131 QLLKRWAMkSPSSPSVTHALRQGAAVAKYMAKTpfGSDGAIIAVAFLCQAHKLGGLPaALVETQIGIDSANLLTSLNSLDHLTILqrsrwdaemfenyktK----TneiqilescrlpATHATNLRQMLVALATDFRSLPLLLVRRLISLGNE--HDTIDSISLGRDALDVYAPLAERFGL 305
                 555555554666777777888888999999877668999************9665555999*********************9999986666666655441....0556677777777*********************99999999999444..34447789***************987 PP

>> PF08606.6  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011        48      26      47 ..      75      96 ..      73      99 .. 0.92
   2 ?    6.7   0.0    0.0012       5.3      10      30 ..     212     233 ..     204     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.011
   PF08606.6 26 elrkqleqlrqeLsqaLYqhDA 47
                e+r++l++l +eL    Y++D+
  MMETSP0890-20130614|5866_1 75 ETRQALDELDRELMMMTYEKDS 96
                79******************98 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0012
   PF08606.6  10 LstLq.neWDaimlEtFelrkq 30 
                 L+ Lq + WDa m E+++++++
  MMETSP0890-20130614|5866_1 212 LTILQrSRWDAEMFENYKTKTN 233
                 67777368**********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.36s 00:00:01.37 Elapsed: 00:00:01.12
# Mc/sec: 1459.21
//
Query:       MMETSP0890-20130614|5869_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-57  194.7   0.0    2.3e-57  194.5   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
    5.9e-08   31.7   0.0    8.5e-08   31.2   0.0    1.2  1  PF00266.14 Aminotransferase class-V
    1.1e-06   27.0   0.0    1.7e-06   26.5   0.0    1.2  1  PF01053.15 Cys/Met metabolism PLP-dependent enzyme
    2.3e-05   23.5   0.0      3e-05   23.1   0.0    1.2  1  PF01212.16 Beta-eliminating lyase
    0.00031   19.8   0.1    0.00044   19.3   0.1    1.1  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.025   13.0   0.1       0.22    9.9   0.1    2.2  3  PF12897.2  Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.5   0.0     1e-60   2.3e-57       3     363 .]      70     450 ..      68     450 .. 0.92

  Alignments for each domain:
  == domain 1    score: 194.5 bits;  conditional E-value: 1e-60
                 --BE--------------HHHHHHHHHHCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EET.....TTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHT.T-EEEEEES-------.-HHHHHHHHHHH-S-....EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC-TCHHHH----EE-----HH..........................HHHCCH---BE--...............---EE-----TTTHHHHHHHH CS
  PF00155.16   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyse.....edfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakky.nlllfvDeaYagfvfgsldavatranveeepn....llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae....................takelskkLleevgvyvtpgtsftv.......pgrlRitvAglteeeleelveal 363
                  +nLg++ ++++     ++ v++a+ e  + +g++n+y+ + g+  l  +la  +  + +++l++ +++ v +Ga+ +i  +  +l ++p+de++  +p+++  k ++ l+g++ + +pl+       +d++ldl++le+a+++      +tk++++++phNPtG+v+t +el  ++d+++++ +l++++De+Y+++v+++l+    +  ++ +p     +l+v s +K f+++G+RvGy++g + +v+ l +++++ ++  +++lq a+a a +  ++ + +le+ + +lq++r++l+  L+ +gl+ + +q+g+fll d+++                     ++ ++++ L e+ gv  +p + f          +  R+++ +  +++l+e+ +++
  MMETSP0890-20130614|5869_1  70 AVNLGQGYPDFA----MPEFVKEAATE--AIFGNYNQYSRPGGHTRLVRTLAARYTPKFGKNLNATDEIAVVGGATNAIFSAVVAL-VDPSDEVVCVEPFFDAPKIAADLMGAKTIGVPLRADwaktsADWKLDLNELEAAITS------RTKLLVLNTPHNPTGKVFTIDELDGIADIVQRHpGLVVLSDEVYEAMVYDDLE----HIHFASRPGmferTLTVFSAGKTFSATGWRVGYVIGPSQFVQPLVRVHQASNFstPTPLQVAIAIAFERCDEFN-YLENLKLTLQAKRDKLCRLLRVAGLAPIVPQGGYFLLADTTKIaantpfplweapediplrdrRDFAVCRLLCERAGVTAIPASAFFSqghrhitDSLARFCF-CKEDDTLDEAFRRI 450
                 58**********....99999999998..***************************9999**************************.9********************************99899999****************......**************************************************884....333333333356699**************************************666666666666666666664.********************999******************999998888888888888877666667777**************9999*****9999*****.**********9987 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.7e-11   8.5e-08      49     177 ..     119     249 ..      82     262 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 3.7e-11
                 HHHHHHHTT-S-GGGEE---------HHHHHH---------EEEEETT--GGGTHHHHHHH.HH---EEE..EE-B-----B-GGGHHHH--TTEEEEEEESB-S---...-B--HHHHHHHHHH-.--EEEEE-- CS
  PF00266.14  49 rekvaelinaeseeeiiFtsgttealnlvalslarslkagdeilvteaehhanlvpwqela.krtgakvk..vipvdeegsldldeleklltpktklvaithvsnvtG...vvqpveeiaklakea.galvvvDaa 177
                 + k+ + +na +  ei ++ g+t+a+  ++ +l   +++ de++ +e    a  +++  +  k+ g+ ++  +++  ++++ldl+ele+++t +tkl++++   n tG   ++++++ ia++++++ g +v+ D +
  MMETSP0890-20130614|5869_1 119 TPKFGKNLNATD--EIAVVGGATNAIFSAVVAL---VDPSDEVVCVEPFFDAPKIAADLMGaKTIGVPLRadWAKTSADWKLDLNELEAAITSRTKLLVLNTPHNPTGkvfTIDELDGIADIVQRHpGLVVLSDEV 249
                 556667788885..*********9999999999...9**********9999999888877514557666566************************************4333566777899999988999998876 PP

>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   7.2e-10   1.7e-06      67     182 ..     126     252 ..      87     259 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 7.2e-10
                 HCT-SEEE-B----HHHHHHHHCCS----EEEEESS----HHHHHHCCHHH.---..EEEEEST.....TCHHHHHHHTTTTEEEEEEESSBTTTTB---H...HHHHHHHHHCSS-EEEEE-TTTH CS
  PF01053.15  67 LeggeaalavsSGmaAiaaallallkaGdevvatddlYggtqrllekvlkk.lgv..evkfvdt.....sdleelekaikpntklvylEtptnpllkvvDi...eaiaklakkkgdvlvvvDntfas 182
                 L+ +++  +v   + Ai++a++al++  devv+ +  +   +   + +  k +gv  ++++ +t      dl+ele+ai+++tkl+ l tp np+ kv  i     ia++++++ +++v+ D ++ +
  MMETSP0890-20130614|5869_1 126 LNATDEIAVVGGATNAIFSAVVALVDPSDEVVCVEPFFDAPKIAADLMGAKtIGVplRADWAKTsadwkLDLNELEAAITSRTKLLVLNTPHNPTGKVFTIdelDGIADIVQRHPGLVVLSDEVYEA 252
                 555666666666678************************977666665555455421455555544444799***********************99876511167999999999899998988765 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.3e-08     3e-05      30     157 ..     110     239 ..      79     248 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHH------EE...-----HHHHHHHHHHH..HHT-EEEEETT-HHHHSS---HHHHH--EEEEE--TT........S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH- CS
  PF01212.16  30 tvarledavaellgkeaalf...vpsGtaAnqialsall..qreeevvvtepshihfdetgaikelggvklrtlknkea.......gkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakey 157
                  v+ l+++ +  +gk+        + G a+n+i  ++++   + +evv+ ep   +fd  + ++ l g+k + ++ + +        kldl++lea+i+       +++l++l +++n   G+v +++el+ ia+i++++
  MMETSP0890-20130614|5869_1 110 LVRTLAARYTPKFGKNLNATdeiAVVGGATNAIFSAVVAlvDPSDEVVCVEP---FFDAPKIAADLMGAKTIGVPLRADwaktsadWKLDLNELEAAITS------RTKLLVLNTPHNP-TGKVFTIDELDGIADIVQRH 239
                 445555555555666544322226778899*99987666548********98...66666666677777777777666555666779*************......599****999995.7****************988 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.9e-07   0.00044      44     146 ..     133     247 ..      93     249 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.9e-07
  PF01041.12  44 vavssGtaAlllaLralgigpGdeVIvpsltfvAtanavlqlGakpvfvDvd......petlnldpaaieaaitprtkaIl...pVhlyGqpadmdairaiaa...eh.glkvieD 146
                   v  +t+A+  a +al  +p deV+ ++  f A   a+  +Gak + v          +++ ld +++eaait rtk  +   p +  G+++ +d++  ia+   +h gl+v+ D
  MMETSP0890-20130614|5869_1 133 AVVGGATNAIFSAVVALV-DPSDEVVCVEPFFDAPKIAADLMGAKTIGVPLRadwaktSADWKLDLNELEAAITSRTKLLVlntPHNPTGKVFTIDELDGIADivqRHpGLVVLSD 247
                 345677999999999975.8************************97766555444455678*****************98633367889999988877776642223336666666 PP

>> PF12897.2  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   9.6e-05      0.22     124     254 ..     153     281 ..     133     310 .. 0.78
   2 ?   -0.0   0.0     0.097   2.2e+02     342     359 ..     362     379 ..     338     387 .. 0.80
   3 ?   -3.8   0.0       1.4   3.1e+03     364     383 ..     405     424 ..     403     426 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 9.6e-05
   PF12897.2 124 kvkllvtvpGydrhfllletlGielltvdlqddGpdvda.....verlvaedasvkGilavpkysnpgGetisaekarrlaalkaaapdfrifaddayrvhdlvaeedkdapvnivalardaGhpdrafvfastsk 254
                    +++  p +d   +  + +G + + v+l+ d     a     +++l a+ +s   +l++ +  np+G++++ +    +a +    p + ++ d+ y +      +d     + +  a   G  +r++ + s+ k
  MMETSP0890-20130614|5869_1 153 SDEVVCVEPFFDAPKIAADLMGAKTIGVPLRADWAKTSAdwkldLNELEAAITSRTKLLVLNTPHNPTGKVFTIDELDGIADIVQRHPGLVVLSDEVYEAMVY---DDL----EHIHFASRPGMFERTLTVFSAGK 281
                 5678999999999999999*************9876654222236778888888889999**************************************87544...222....23455566666666665555555 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.097
   PF12897.2 342 sprGGyfisldtldgvak 359
                  p+GGyf+  dt + +a+
  MMETSP0890-20130614|5869_1 362 VPQGGYFLLADTTKIAAN 379
                 69*********9987776 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.4
   PF12897.2 364 laeeaGvsltaaGatypaGe 383
                 l e+aGv+  +a a + +G+
  MMETSP0890-20130614|5869_1 405 LCERAGVTAIPASAFFSQGH 424
                 7899**********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:01.12
# Mc/sec: 982.08
//
Query:       MMETSP0890-20130614|5870_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-23   82.8   0.0    1.3e-22   80.2   0.0    1.9  2  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    0.00026   19.9   0.0     0.0004   19.3   0.0    1.2  1  PF00398.15 Ribosomal RNA adenine dimethylase
     0.0039   16.6   0.0     0.0075   15.7   0.0    1.5  1  PF13847.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.028   14.8   0.0      0.065   13.6   0.0    1.6  1  PF12847.2  Methyltransferase domain
      0.045   12.9   0.0       0.07   12.3   0.0    1.2  1  PF08123.8  Histone methylation protein DOT1
        5.6    4.4   7.1        9.7    3.7   5.0    1.3  1  PF04931.8  DNA polymerase phi


Domain annotation for each model (and alignments):
>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   5.8e-26   1.3e-22       4     195 ..      65     268 ..      62     275 .. 0.83
   2 ?    0.1   0.0      0.19   4.2e+02     179     208 ..     312     340 ..     307     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 5.8e-26
                 HHHHHHHHH--.---HHHHHHHHHS-GGGGS-GGGGGGTTSSS-EE----......-EE--HHHHHHHHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE--------G.....GG--BSEEEESSB-SS--HHHHHT.B-----EEEEE-.--SEEEEEEEE--.--EEEE CS
  PF01135.14   4 ealieelkkkgviksdkvaealeevdReefvpesfkekaYedaplsigyn......atiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGye.....ekaPYdaihvgaaapeiPealidQ.LkeGGrlvvPvgeeeeQvlklvdkkadgkvvik 195
                 e+l   l+++g i+s  va a++++dR++fvpe+  + aY+d+pl+          +  Sap++ a++le l+lk+ +  L++GsGsGyl+ + a+++g++     +er ++l+++ +++  ++  ++ ++v+  G   +e      +  +d+i+ +a+a++  ++l+   Lk+ G lv P ++++  ++  ++ +++  + ++
  MMETSP0890-20130614|5870_1  65 ESLAILLERRGSIRSSSVAGAFRKIDRAQFVPEQCIDCAYDDSPLRALDTksdgciVHLSAPSIYAAVLEALDLKPRDAFLNIGSGSGYLSTLAATILGPDSVHHCLERCPSLARRCQETFANDPNMRHVIVHQGGVSLFEldvdnSTLRFDKIYCAAGAKSSDKQLLARfLKPNGVLVGPFETDNIIRVAIFQAQQEYDLDQN 268
                 5667778999**********************************975444577888999*******************************************999****************99988855555555776665323213457*************999875439**********9977766666666665555554 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.19
                 EEEEEEEE--.--EEEEEEEEE---B---- CS
  PF01135.14 179 Qvlklvdkkadgkvvikkleevrfvpltdk 208
                 Q l +++ k+ ++++i++l+ v f pl+ +
  MMETSP0890-20130614|5870_1 312 QCLIRAQLKD-DTLEIQELMPVQFTPLVRE 340
                 6666666666.99**************975 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-07    0.0004      15      79 ..     125     192 ..     121     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.7e-07
  PF00398.15  15 nkkvineIldklnlqekdtvlEigpGkGalTeeLakra...kqvvalEidsklvkrlqkklakdenve 79 
                  ++++  +l++l+l++ d  l ig+G+G l++  a ++     +  lE  ++l++r q+++a+d+n++
  MMETSP0890-20130614|5870_1 125 APSIYAAVLEALDLKPRDAFLNIGSGSGYLSTLAATILgpdSVHHCLERCPSLARRCQETFANDPNMR 192
                 6789999*************************99999999777899****************999986 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-06    0.0075       6     107 ..     143     243 ..     138     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.3e-06
   PF13847.1   6 kvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklle...esfDlvisnevlnaladpqkvlkeiervlkpggrli 107
                  +l +G+G+Gyl+  +a  lgp++  +++++ +    +++e +++      v ++qg +  +e  +     +fD + +        ++++  + + r+lkp+g+l+
  MMETSP0890-20130614|5870_1 143 AFLNIGSGSGYLSTLAATILGPDSVHHCLERCPSLARRCQETFANDPNMrHVIVHQGGVSLFELDVDnstLRFDKIYCA-----AGAKSSDKQLLARFLKPNGVLV 243
                 5789*************************************98887766688888865555442233466899999994.....444555558999*******998 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.9e-05     0.065       4     108 ..     143     243 ..     140     244 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.9e-05
   PF12847.2   4 rilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsller...fDavllkgltldallaldeprrvlealpkllkpggrlv 108
                   l +G+G+G+ls  +a  l p++  + +++ +  +++++e  ++  +  ++ ++qg +  +el++++    fD + +     +a  +        + l++ lkp+g+lv
  MMETSP0890-20130614|5870_1 143 AFLNIGSGSGYLSTLAATiLGPDSVHHCLERCPSLARRCQETFANDPNMRHVIVHQGGVsLFELDVDNStlrFDKIYCAA---GAKSSD------KQLLARFLKPNGVLV 243
                 4699********999999999**********************44445567779**9997666666666889**999977...223333......334557788888886 PP

>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.1e-05      0.07      28      65 ..     126     163 ..     122     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHTT-----EEEEE------HHHHHHHH-- CS
   PF08123.8  28 peflsevldkvnlkkedvFvDLGSGvGnvvlqaalevg 65 
                 p++ + vl+ ++lk+ d F+ +GSG G + ++aa  +g
  MMETSP0890-20130614|5870_1 126 PSIYAAVLEALDLKPRDAFLNIGSGSGYLSTLAATILG 163
                 567789***********************999998765 PP

>> PF04931.8  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   5.0    0.0042       9.7     656     694 ..     261     299 ..     258     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0042
   PF04931.8 656 eetDddedelkeiedseseseddsEdgeedEkedddeav 694
                 +e D d +++ + +d + e+ + +E+++edE+e++ + +
  MMETSP0890-20130614|5870_1 261 QEYDLDQNQEAAAQDHDHEQNNVDESDSEDEEEEEEQLH 299
                 577899999999999999999999*******99998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       862  (0.0630486); expected 273.4 (0.02)
Passed bias filter:                      608  (0.0444705); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:01.41
# Mc/sec: 691.71
//
Query:       MMETSP0890-20130614|5871_1  [L=898]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-180  601.4   0.0   3.1e-180  600.5   0.0    1.4  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  600.5   0.0  2.3e-184  3.1e-180       1     738 [.      21     898 .]      21     898 .] 0.93

  Alignments for each domain:
  == domain 1    score: 600.5 bits;  conditional E-value: 2.3e-184
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXX.....XXXXXXXX.XXXXXX....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXX.XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....................................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXSSSTTTCCHHHHHHHHCHCCHHHHHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14   1 vsaLgelglvqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpesk.............evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk.............veelrelssldeefkalraaeglklg...................fvaGvikreklealerllwralrgnlyikqaeieevledpk..ekvekevfiiffvgeellekvkkilesfgaelyevpetee....erse.llskvnkriedlktvleeteselekvlakiadellaweeqvskekavyetlnlfsidstktliaegWvpakeleelkkaleeateesgs.evpsilnrietneepPtylktnkftagfqsivdaYgiakYrEvnpalltiitFpflFgvmlGDlGyGlilllialllvlkekklkakk..dEifqmffkgryilllmgvfSiytGliyndvfskslnifgsgwknpaa.................lkkkesltlakkeg....pypfgidpiwnlaenkLlflnsfkmklsvilGvihmtfglllsffnhvkekskldildafipqlifllsilgYlviliiykwlvdwake.....................................................skeapslliglinmflfpgtldsqlYpgQakvqviLvvlalvcvpillllkplflkregkkks..............ekedlenqdeeevesdaeeeeeefefgevmihqvihtiefllgcvshtaSYlRLwALsLAhaqlssvlwtmvirlafeskslvialvvvfaivfvltvvilvlmeglsAflhaLRLhw 738
                 v++Lg +g +q+ Dln++++ fqr++v  ++r++e+erklr++++ei+  ++++++ +e++ +++                ++ +e+ le++ee+l e++ ++++L +++ne+ e+++ l++ k f++  +             ++++++  + d+ ++ l +++ + lg                     +Gv+ ++    +er+l r +rgn  ++  e+e ++ d      ++k vfiif+++e +++ v++i++ fga+ y+vp++ +    er + l ++  +++ d  +vl +  + + ++  ++a +  +w++ v  ekavy+++nlf+ d++ +l  egWv a+   e +  l++a +++++     ++++ +    pPty++tn ft ++q++vd+Yg+++Y+E+np+l+t++tFpflFg+m GD+G+G  ++l +l+l  +  +++++k  dE+++ +++ r +l++mg  ++y Gl+ynd+fs +ln+f+sg++ p a                 ++++ +++++   g    +y fg+dp+w++ +n+Llf ns+kmk +v++G+i+mt g++l   n +++k+    + +fip ++f l ++gY+vili+ kw++dw ++                                                       ++p l+++lin  l+pg +d+ +Y gQa  q+iL+v+a ++vp+ll++kpl+++++ + ++              ++ dlen + +e+++++  eeee +f ev ihq i+tief+lg+vs+taSYlRLwALsLAh++l++v+w+ +++ a +s++ ++a++++  i++ +t ++l++m +l  flhaLRLhw
  MMETSP0890-20130614|5871_1  21 VQQLGMQGQMQLTDLNPELTPFQRRYVSYIKRCEELERKLRYMQKEISGFGLKMEEGNESTIAESVAikggsgaprtggaILDAVEADLEKYEEQLLELNSYSKELTSRYNEKIEYQECLDKGKAFFDLYQqggtgllptsgsyQHATSNPMRGDDGTQPLLDDDTVFLGstggnfgghrtvetdmkfsSAVGVVSATEKLRFERMLFRSTRGNCLVRFTEVERPIADASsgTSERKLVFIIFYKSEVIASIVNRICSAFGARQYPVPDHTQpgdaERLDaLRRETLSELADAREVLLKNLELRLALCSRLARRYNEWRKIVLEEKAVYHAMNLFKADVAGMLRGEGWVVADAEAEARVLLQRAHAAVDLpGAAMLAHVPKPWPRPPTYFETNAFTYAYQEFVDTYGVPRYKEINPSLFTAVTFPFLFGMMYGDVGHGTCIFLGGLFLCASYASFAKSKstDEMMAGIYSARFMLTMMGFAAVYCGLVYNDCFSLALNLFNSGYEFPKAisdakspsdaaskidseTNRTATIKTYY--GdpsnVYAFGVDPAWHISDNELLFFNSMKMKTAVVIGIIQMTGGIFLKGCNALYFKEYDVFFLEFIPMIVFDLALFGYMVILIFTKWAIDWNERqargtcfapstssarhpctssdincvlydgttpcnyddelkdkcdlnfggssnGCSPPNLINQLINIALQPGVVDEPMYDGQASTQTILLVVAFLAVPVLLIGKPLYVYMTTQHNQhhalstdntqiemqHHTDLENLNGNEHHDQHGDEEEEHNFTEVAIHQCIETIEFVLGMVSNTASYLRLWALSLAHSELAQVFWEKTMQSAINSNN-AFAIFIAYGIFAAVTAAVLLAMDLLECFLHALRLHW 898
                 689****************************************************888888888887999*********99999********************************************977899999999998877777777777777777777777777777777799999999999899**************************************9999999********************************98753333344314566778888999999888888889999************************************************************956667777888899*************************************************************************999***********************************************8899***99999998775433333333333..25689***************************************************7777889******************************9***************************************************97788999***********************************************999988776679****99888777677777777777777777779999****************************************************99998.9*********************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.41u 0.39s 00:00:01.79 Elapsed: 00:00:00.93
# Mc/sec: 2313.90
//
Query:       MMETSP0890-20130614|5872_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-90  295.5  24.6      1e-22   79.7   0.6    5.0  5  PF13424.1  Tetratricopeptide repeat
    9.9e-83  269.8  17.9    1.5e-13   50.0   0.0    8.0  8  PF13374.1  Tetratricopeptide repeat
    2.8e-42  140.5  42.3      2e-07   30.2   0.2    8.1  8  PF00515.23 Tetratricopeptide repeat
    8.9e-39  130.8  23.8    2.3e-11   43.0   1.0    5.2  5  PF13414.1  TPR repeat
    3.1e-37  123.3  18.7    9.2e-05   21.8   0.0    7.8  8  PF13176.1  Tetratricopeptide repeat
    3.6e-33  110.6  37.2    1.4e-05   24.4   0.2    8.1  8  PF07719.12 Tetratricopeptide repeat
    1.2e-21   74.6  32.6    0.00029   20.2   0.0    8.1  8  PF13181.1  Tetratricopeptide repeat
    1.1e-20   73.5  24.1    3.8e-07   30.4   0.4    5.5  7  PF13432.1  Tetratricopeptide repeat
    1.6e-19   68.2  19.2     0.0015   18.4   0.0    8.6  7  PF13431.1  Tetratricopeptide repeat
    2.2e-18   64.9  16.9       0.11   13.0   0.0    7.2  7  PF13428.1  Tetratricopeptide repeat
    3.8e-14   52.4   9.9    7.4e-05   22.6   0.1    4.2  4  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      7e-14   50.6   0.2       0.86   10.1   0.0    6.3  6  PF07721.9  Tetratricopeptide repeat
      7e-13   48.0  17.9       0.23   11.8   0.0    7.2  7  PF13174.1  Tetratricopeptide repeat
      5e-07   29.3  19.9       0.29   10.9   0.2    6.5  5  PF04212.13 MIT (microtubule interacting and transport) domain
      1e-06   27.8   0.1       0.32    9.8   0.0    4.8  5  PF04910.9  Transcriptional repressor TCF25
    6.7e-06   25.1   2.3       0.19   10.8   0.0    5.4  6  PF10516.4  SHNi-TPR
    1.1e-05   25.6   0.9        1.3    9.4   0.0    4.6  5  PF14357.1  Domain of unknown function (DUF4404)
    0.00013   21.6  27.1       0.82    9.4   0.0    7.4  7  PF07720.7  Tetratricopeptide repeat
    0.00096   18.9   1.1     0.0027   17.4   0.8    1.6  1  PF01935.12 Domain of unknown function DUF87
     0.0013   18.0   6.0       0.61    9.3   2.2    3.5  2  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
     0.0059   16.1   6.2        4.7    6.6   0.2    4.5  5  PF01076.14 Plasmid recombination enzyme
     0.0066   16.3   7.4       0.79    9.6   0.3    4.8  4  PF12688.2  Tetratrico peptide repeat
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.049   12.9   0.6    1.8  1  PF09712.5  Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
      0.015   15.1   0.5         57    3.6   0.0    4.4  5  PF09094.6  Domain of unknown function (DUF1925)
      0.019   14.7   8.8        4.4    7.0   0.1    5.0  4  PF11846.3  Domain of unknown function (DUF3366)
      0.085   12.7   2.4         15    5.6   0.0    3.7  3  PF06069.6  PerC transcriptional activator
       0.21   11.2   6.5         13    5.5   0.0    4.6  5  PF10975.3  Protein of unknown function (DUF2802)
       0.25   10.6   1.7         27    3.9   0.0    4.1  6  PF10602.4  26S proteasome subunit RPN7
       0.72    9.6   8.7         23    4.8   0.2    4.5  4  PF09145.5  Ubiquitin-associated


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   2.2e-17     1e-14      21      77 ..       2      59 ..       1      60 [. 0.97
   2 !   73.5   0.6   1.8e-23   8.5e-21       1      77 [.      66     143 ..      66     144 .. 0.97
   3 !   72.6   0.1   3.5e-23   1.7e-20      10      78 .]     117     186 ..     115     186 .. 0.97
   4 !   79.7   0.6   2.2e-25     1e-22       1      78 []     192     270 ..     192     270 .. 0.97
   5 !   58.7   1.0   7.7e-19   3.6e-16       8      75 ..     241     309 ..     240     310 .] 0.98

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 2.2e-17
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                yd+A  +ye al++   ++g+dhp +a+aln+la l++a+g+y +A++++e+A++i++
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKIcEDKFGPDHPKVAKALNHLALLLHAQGEYVKAKPLHERAVRIRQ 59
                9*************888***************************************98 PP

  == domain 2    score: 73.5 bits;  conditional E-value: 1.8e-23
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                 h+d+a +l nla++l+ + +ydeA ++ye+a+++  +++g+dh ++a+ l  la+l++ +g+y +A++++e+A+ei e
  MMETSP0890-20130614|5872_1  66 HSDVAESLKNLAGLLQDQAKYDEAKTYYERAIQIwEKVYGHDHFQVANGLGKLADLFQDQGKYNQAKPLYERAVEIGE 143
                 89********************************99999************************************976 PP

  == domain 3    score: 72.6 bits;  conditional E-value: 3.5e-23
   PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                  la++++ +g+y +A  lye+a+e+  ++lg++hpd+a+ lnnla l+ a+g+ydeA++y+e+ l+i e+
  MMETSP0890-20130614|5872_1 117 KLADLFQDQGKYNQAKPLYERAVEIgEKTLGPNHPDVATGLNNLALLLKAQGNYDEAKPYYERTLRILEQ 186
                 79*****************************************************************885 PP

  == domain 4    score: 79.7 bits;  conditional E-value: 2.2e-25
   PF13424.1   1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78 
                 h+ +at+lnnla++l  +g+ydeA  +ye+a+++  +++g+dhp++a  l nla l++++g+y eA+ ++++A +++ek
  MMETSP0890-20130614|5872_1 192 HQAVATVLNNLAELLNNQGKYDEAKPFYERAIQIwEKVYGHDHPEVALGLSNLAGLLRKQGKYTEAELLYRRAFAMDEK 270
                 8899******************************99999************************************9986 PP

  == domain 5    score: 58.7 bits;  conditional E-value: 7.7e-19
   PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 l+nla++lr++g+y eA+ ly++a ++  +++g +hp +a  lnnla l+ a+g+ydeA+  +e+A++i
  MMETSP0890-20130614|5872_1 241 LSNLAGLLRKQGKYTEAELLYRRAFAMdEKTVGLNHPTLAIHLNNLAFLLSAQGKYDEAKSSYERAINI 309
                 78**************************99************************************987 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.3e-06    0.0025      18      41 ..       2      25 ..       1      26 [. 0.97
   2 !   40.3   0.3   3.5e-13   1.7e-10       1      42 []      27      68 ..      27      68 .. 0.97
   3 !   35.6   0.0   1.1e-11   5.1e-09       1      40 [.      69     108 ..      69     110 .. 0.97
   4 !   37.7   0.0   2.3e-12   1.1e-09       5      42 .]     115     152 ..     111     152 .. 0.92
   5 !   39.2   0.5     8e-13   3.8e-10       1      41 [.     153     193 ..     153     194 .. 0.96
   6 !   50.0   0.0   3.2e-16   1.5e-13       1      42 []     195     236 ..     195     236 .. 0.98
   7 !   34.5   0.1   2.3e-11   1.1e-08       2      41 ..     238     277 ..     237     278 .. 0.95
   8 !   21.3   0.0   3.3e-07   0.00016       2      31 ..     280     309 ..     279     310 .] 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.3e-06
   PF13374.1 18 yeeAlaleeealairrrllGddHP 41
                y++A +++e al i++  +G+dHP
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKICEDKFGPDHP 25
                99*********************9 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 3.5e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a aln+LAl+l+a+g+y +A +l+e+a+ ir++ lG++H d
  MMETSP0890-20130614|5872_1 27 VAKALNHLALLLHAQGEYVKAKPLHERAVRIRQEKLGPNHSD 68
                789*************************************76 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 1.1e-11
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40 
                 +a +l nLA +l+++ +y+eA  ++e+a  i+++++G dH
  MMETSP0890-20130614|5872_1  69 VAESLKNLAGLLQDQAKYDEAKTYYERAIQIWEKVYGHDH 108
                 799************************************* PP

  == domain 4    score: 37.7 bits;  conditional E-value: 2.3e-12
   PF13374.1   5 lnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 l  LA +++++g+y++A +l+e+a++i ++ lG++HPd
  MMETSP0890-20130614|5872_1 115 LGKLADLFQDQGKYNQAKPLYERAVEIGEKTLGPNHPD 152
                 667999*******************************8 PP

  == domain 5    score: 39.2 bits;  conditional E-value: 8e-13
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 +a+ lnnLAl+l a+g+y+eA +++e++l i ++++G +H 
  MMETSP0890-20130614|5872_1 153 VATGLNNLALLLKAQGNYDEAKPYYERTLRILEQIYGLNHQ 193
                 6888************************************5 PP

  == domain 6    score: 50.0 bits;  conditional E-value: 3.2e-16
   PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                 +a+ lnnLA +l+++g+y+eA +++e+a  i+++++G dHP+
  MMETSP0890-20130614|5872_1 195 VATVLNNLAELLNNQGKYDEAKPFYERAIQIWEKVYGHDHPE 236
                 799**************************************6 PP

  == domain 7    score: 34.5 bits;  conditional E-value: 2.3e-11
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrrllGddHP 41 
                 a  l+nLA +lr++g+y eA+ l+++a a+ ++ +G +HP
  MMETSP0890-20130614|5872_1 238 ALGLSNLAGLLRKQGKYTEAELLYRRAFAMDEKTVGLNHP 277
                 56699**********************************9 PP

  == domain 8    score: 21.3 bits;  conditional E-value: 3.3e-07
   PF13374.1   2 aaalnnLAlalrargryeeAlaleeealai 31 
                 a  lnnLA +l+a+g+y+eA   +e+a  i
  MMETSP0890-20130614|5872_1 280 AIHLNNLAFLLSAQGKYDEAKSSYERAINI 309
                 6679****************9999998766 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.5   0.00079      0.37      17      33 ..       2      18 ..       1      19 [. 0.93
   2 !   18.7   0.2   1.8e-06   0.00085       1      32 [.      28      59 ..      28      61 .. 0.94
   3 !   22.5   0.9   1.1e-07   5.2e-05       1      30 [.      70      99 ..      70     102 .. 0.94
   4 !   18.4   0.2   2.2e-06     0.001       2      30 ..     113     141 ..     112     144 .. 0.91
   5 !   27.0   0.3   4.1e-09   1.9e-06       2      30 ..     155     183 ..     154     186 .. 0.92
   6 !   30.2   0.2   4.2e-10     2e-07       1      30 [.     196     225 ..     196     228 .. 0.92
   7 !   18.4   0.2   2.2e-06     0.001       2      32 ..     239     269 ..     238     270 .. 0.90
   8 !   22.9   0.1   8.5e-08     4e-05       4      29 ..     283     308 ..     280     310 .] 0.93

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00079
                HHHHHHHHHHHHHHHTT CS
  PF00515.23 17 ydeAleyyekALelnPn 33
                yd+A  +ye AL++ ++
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKICED 18
                9*************876 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.8e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                akal+ l+++++ +g+y +A    e+A++++ 
  MMETSP0890-20130614|5872_1 28 AKALNHLALLLHAQGEYVKAKPLHERAVRIRQ 59
                89*************************99975 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 1.1e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a++l+nl+ +++ + kydeA  yye+A+++
  MMETSP0890-20130614|5872_1 70 AESLKNLAGLLQDQAKYDEAKTYYERAIQI 99
                789*************************98 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                 + l  l+ +++ +gky++A   ye+A+e+
  MMETSP0890-20130614|5872_1 113 NGLGKLADLFQDQGKYNQAKPLYERAVEI 141
                 667889*********************98 PP

  == domain 5    score: 27.0 bits;  conditional E-value: 4.1e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                   l+nl++++  +g+ydeA  yye+ L++
  MMETSP0890-20130614|5872_1 155 TGLNNLALLLKAQGNYDEAKPYYERTLRI 183
                 579**********************9987 PP

  == domain 6    score: 30.2 bits;  conditional E-value: 4.2e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a +l+nl+ ++ ++gkydeA  +ye+A+++
  MMETSP0890-20130614|5872_1 196 ATVLNNLAELLNNQGKYDEAKPFYERAIQI 225
                 5689************************98 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnP 32 
                   l nl+ +++k+gky eA+  y++A   ++
  MMETSP0890-20130614|5872_1 239 LGLSNLAGLLRKQGKYTEAELLYRRAFAMDE 269
                 6799**********************88876 PP

  == domain 8    score: 22.9 bits;  conditional E-value: 8.5e-08
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALe 29 
                 l+nl+ ++  +gkydeA   ye+A+ 
  MMETSP0890-20130614|5872_1 283 LNNLAFLLSAQGKYDEAKSSYERAIN 308
                 89**********************95 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1     2e-07   9.5e-05      19      67 ..       2      57 ..       1      59 [. 0.86
   2 !   23.1   0.8   8.2e-08   3.9e-05       2      35 ..      69     102 ..      68     119 .. 0.85
   3 !   40.0   0.1   4.3e-13     2e-10       8      67 ..     117     183 ..     110     185 .. 0.85
   4 !   43.0   1.0   4.9e-14   2.3e-11       3      68 ..     196     268 ..     194     269 .. 0.90
   5 !   16.7   0.2   7.8e-06    0.0037       3      32 ..     280     309 ..     278     310 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2e-07
   PF13414.1 19 ydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                yd+A  +ye Al+++     p++++   +++ lAl++  +g +y++A    e+A+++
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKICedkfgPDHPKvakALNHLALLLHAQG-EYVKAKPLHERAVRI 57
                9*************77778866655555*************.6*******9999987 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 8.2e-08
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpn 35 
                 +Ae+lk+l+  l  + +ydeA  +ye+A++++++
  MMETSP0890-20130614|5872_1  69 VAESLKNLAGLLQDQAKYDEAKTYYERAIQIWEK 102
                 79*****************************854 PP

  == domain 3    score: 40.0 bits;  conditional E-value: 4.3e-13
   PF13414.1   8 elGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67 
                  l+  +  +g+y +A  +ye+A+e+      pn+++    ++nlAl++  +g +y+eA  +ye+ l++
  MMETSP0890-20130614|5872_1 117 KLADLFQDQGKYNQAKPLYERAVEIGektlgPNHPDvatGLNNLALLLKAQG-NYDEAKPYYERTLRI 183
                 689999******************844444488877777*************.7**********9986 PP

  == domain 4    score: 43.0 bits;  conditional E-value: 4.9e-14
   PF13414.1   3 AealkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 A +l++l++ l ++g+ydeA  +ye+A++++        p+ a  ++nlA +++k+g +y eA   y++A + d
  MMETSP0890-20130614|5872_1 196 ATVLNNLAELLNNQGKYDEAKPFYERAIQIWekvyghdhPEVALGLSNLAGLLRKQG-KYTEAELLYRRAFAMD 268
                 7899**************************87777766677777*************.6***********9877 PP

  == domain 5    score: 16.7 bits;  conditional E-value: 7.8e-06
   PF13414.1   3 AealkelGnalfkegdydeAieayekAlel 32 
                 A  l++l+  l  +g+ydeA   ye+A+ +
  MMETSP0890-20130614|5872_1 280 AIHLNNLAFLLSAQGKYDEAKSSYERAINI 309
                 788999999999999999999999999987 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       2.2     1e+03      15      34 ..       2      21 ..       1      23 [. 0.85
   2 !   14.2   0.0   5.4e-05     0.025       1      31 [.      30      60 ..      30      65 .. 0.84
   3 !   20.0   0.2   7.3e-07   0.00035       1      30 [.      72     101 ..      72     106 .. 0.88
   4 !   17.5   0.0   4.6e-06    0.0021       3      28 ..     116     141 ..     115     149 .. 0.82
   5 !   20.0   0.2   7.5e-07   0.00035       2      28 ..     157     183 ..     156     191 .. 0.86
   6 !   21.8   0.0     2e-07   9.2e-05       1      30 [.     198     227 ..     198     232 .. 0.88
   7 !   20.5   0.1   5.1e-07   0.00024       2      32 ..     241     269 ..     240     272 .. 0.91
   8 !   15.7   0.1   1.7e-05    0.0082       2      26 ..     283     307 ..     283     310 .] 0.92

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 2.2
   PF13176.1 15 yekAielyeraLaltkdpld 34
                y+kA  +ye aL++ +d ++
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKICEDKFG 21
                99*******99999888776 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.4e-05
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                al+ La l  ++g+y kA  l+era +++++
  MMETSP0890-20130614|5872_1 30 ALNHLALLLHAQGEYVKAKPLHERAVRIRQE 60
                79**********************5555554 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 7.3e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +l nLa l +++ +y++A ++yera+++++
  MMETSP0890-20130614|5872_1  72 SLKNLAGLLQDQAKYDEAKTYYERAIQIWE 101
                 689*********************877765 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 4.6e-06
   PF13176.1   3 lnLarlysrlgdyekAielyeraLal 28 
                   La+l++++g+y +A  lyera ++
  MMETSP0890-20130614|5872_1 116 GKLADLFQDQGKYNQAKPLYERAVEI 141
                 57********************6554 PP

  == domain 5    score: 20.0 bits;  conditional E-value: 7.5e-07
   PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                 l+nLa l  ++g+y++A  +yer L++
  MMETSP0890-20130614|5872_1 157 LNNLALLLKAQGNYDEAKPYYERTLRI 183
                 89*********************5543 PP

  == domain 6    score: 21.8 bits;  conditional E-value: 2e-07
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltk 30 
                 +l+nLa+l  ++g+y++A  +yera+++++
  MMETSP0890-20130614|5872_1 198 VLNNLAELLNNQGKYDEAKPFYERAIQIWE 227
                 59**********************877765 PP

  == domain 7    score: 20.5 bits;  conditional E-value: 5.1e-07
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdp 32 
                 l+nLa l +++g+y +A+ ly+r  a++ d+
  MMETSP0890-20130614|5872_1 241 LSNLAGLLRKQGKYTEAELLYRR--AFAMDE 269
                 89*********************..777765 PP

  == domain 8    score: 15.7 bits;  conditional E-value: 1.7e-05
   PF13176.1   2 llnLarlysrlgdyekAielyeraL 26 
                 l+nLa l s++g+y++A + yera+
  MMETSP0890-20130614|5872_1 283 LNNLAFLLSAQGKYDEAKSSYERAI 307
                 89*********************54 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.31   1.5e+02      17      32 ..       2      17 ..       1      19 [. 0.89
   2 !   15.0   0.3   3.3e-05     0.015       1      30 [.      28      57 ..      28      60 .. 0.94
   3 !   18.0   0.8   3.6e-06    0.0017       1      30 [.      70      99 ..      70      99 .. 0.95
   4 !   16.1   0.1   1.4e-05    0.0067       2      30 ..     113     141 ..     112     144 .. 0.90
   5 !   24.4   0.2     3e-08   1.4e-05       2      30 ..     155     183 ..     154     187 .. 0.91
   6 !   19.6   0.0   1.1e-06    0.0005       1      30 [.     196     225 ..     196     225 .. 0.94
   7 !   18.0   0.3   3.4e-06    0.0016       1      32 [.     238     269 ..     238     271 .. 0.91
   8 !   20.6   0.1   5.2e-07   0.00025       4      29 ..     283     308 ..     283     309 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHHH-T CS
  PF07719.12 17 yeeAleafekAleldP 32
                y++A+ ++e Al+++ 
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKICE 17
                9********9999986 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 3.3e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+al+ l+l++ ++g+y +A+ + e+A+++
  MMETSP0890-20130614|5872_1 28 AKALNHLALLLHAQGEYVKAKPLHERAVRI 57
                799************************997 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 3.6e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAlel 30
                ae l nl+ ++  + +y+eA+ ++e+A+++
  MMETSP0890-20130614|5872_1 70 AESLKNLAGLLQDQAKYDEAKTYYERAIQI 99
                78899***********************96 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  +l  l+++   +g+y++A+ ++e+A+e+
  MMETSP0890-20130614|5872_1 113 NGLGKLADLFQDQGKYNQAKPLYERAVEI 141
                 567789*********************97 PP

  == domain 5    score: 24.4 bits;  conditional E-value: 3e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  +l+nl+l++ ++g+y+eA+ ++e+ l++
  MMETSP0890-20130614|5872_1 155 TGLNNLALLLKAQGNYDEAKPYYERTLRI 183
                 689**********************9997 PP

  == domain 6    score: 19.6 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a +l+nl++++ ++g+y+eA+ ++e+A+++
  MMETSP0890-20130614|5872_1 196 ATVLNNLAELLNNQGKYDEAKPFYERAIQI 225
                 5689************************96 PP

  == domain 7    score: 18.0 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a +l nl+ +++k+g+y eA+ ++++A + d 
  MMETSP0890-20130614|5872_1 238 ALGLSNLAGLLRKQGKYTEAELLYRRAFAMDE 269
                 56899**********************99886 PP

  == domain 8    score: 20.6 bits;  conditional E-value: 5.2e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                 l+nl+ ++ ++g+y+eA+  +e+A+ 
  MMETSP0890-20130614|5872_1 283 LNNLAFLLSAQGKYDEAKSSYERAIN 308
                 68**********************96 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.15        70      17      31 ..       2      16 ..       1      19 [. 0.87
   2 ?    4.1   0.0     0.087        41       1      27 [.      28      54 ..      28      61 .. 0.82
   3 !   13.2   0.8   0.00011     0.052       3      30 ..      72      99 ..      70      99 .. 0.88
   4 !   12.9   0.1   0.00014     0.065       4      30 ..     115     141 ..     112     144 .. 0.90
   5 !   19.6   0.3   9.7e-07   0.00046       4      30 ..     157     183 ..     154     188 .. 0.89
   6 !   20.2   0.0   6.1e-07   0.00029       3      30 ..     198     225 ..     196     225 .. 0.94
   7 ?    5.0   0.0     0.047        22       6      32 ..     243     269 ..     238     272 .. 0.87
   8 !   15.1   0.2   2.7e-05     0.013       4      28 ..     283     307 ..     280     309 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.15
                HHHHHHHHH---HHH CS
   PF13181.1 17 ydkAkeylekalelk 31
                ydkAk ++e al++ 
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKIC 16
                9********999986 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.087
                ---TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1  1 akayynlGdiYrqlGdydkAkeyleka 27
                aka++ l++++   G+y kAk   e+a
  MMETSP0890-20130614|5872_1 28 AKALNHLALLLHAQGEYVKAKPLHERA 54
                5899****************9755555 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 0.00011
                -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                ++ nl+ ++ +  +yd+Ak y+e+a+++
  MMETSP0890-20130614|5872_1 72 SLKNLAGLLQDQAKYDEAKTYYERAIQI 99
                56688889999***************97 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 0.00014
                 TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                 +  l+d++ + G+y +Ak  +e+a+e+
  MMETSP0890-20130614|5872_1 115 LGKLADLFQDQGKYNQAKPLYERAVEI 141
                 5679*********************98 PP

  == domain 5    score: 19.6 bits;  conditional E-value: 9.7e-07
                 TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                 ++nl+++++  G+yd+Ak y+e+ l +
  MMETSP0890-20130614|5872_1 157 LNNLALLLKAQGNYDEAKPYYERTLRI 183
                 89********************98876 PP

  == domain 6    score: 20.2 bits;  conditional E-value: 6.1e-07
                 -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                 +++nl++++ + G+yd+Ak ++e+a+++
  MMETSP0890-20130614|5872_1 198 VLNNLAELLNNQGKYDEAKPFYERAIQI 225
                 799***********************97 PP

  == domain 7    score: 5.0 bits;  conditional E-value: 0.047
                 T---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   6 nlGdiYrqlGdydkAkeylekalelkp 32 
                 nl+ ++r+ G+y +A+  +++a  ++ 
  MMETSP0890-20130614|5872_1 243 NLAGLLRKQGKYTEAELLYRRAFAMDE 269
                 788899**************9988875 PP

  == domain 8    score: 15.1 bits;  conditional E-value: 2.7e-05
                 TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   4 yynlGdiYrqlGdydkAkeylekal 28 
                 ++nl+ ++   G+yd+Ak+++e+a+
  MMETSP0890-20130614|5872_1 283 LNNLAFLLSAQGKYDEAKSSYERAI 307
                 57999999***************98 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0023       1.1      27      59 ..      24      61 ..       2      67 .. 0.80
   2 !   15.5   2.0   3.9e-05     0.018       4      60 ..      35      99 ..      34     107 .. 0.89
   3 !    8.1   0.2    0.0082       3.9       3      27 ..      76     100 ..      74     116 .. 0.73
   4 !   30.4   0.4   8.1e-10   3.8e-07       3      59 ..     118     182 ..     117     186 .. 0.95
   5 !   27.2   1.6   8.6e-09   4.1e-06       3      60 ..     160     225 ..     158     229 .. 0.90
   6 !   26.8   1.1   1.1e-08   5.2e-06       3      57 ..     202     264 ..     200     271 .. 0.94
   7 !   22.4   1.1   2.6e-07   0.00012       3      58 ..     244     307 ..     242     310 .] 0.92

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0023
   PF13432.1 27 aPeaaeallllaeallrlgrldeAaallraal.....a 59
                +P+ a al  la +l+++g++ +A  l ++a+     +
  MMETSP0890-20130614|5872_1 24 HPKVAKALNHLALLLHAQGEYVKAKPLHERAVrirqeK 61
                4999********************99999998555555 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.9e-05
   PF13432.1  4 ArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60
                A++l ++G+y +A +++e+a++           + ae l +la +l ++ ++deA  ++++a+++
  MMETSP0890-20130614|5872_1 35 ALLLHAQGEYVKAKPLHERAVRIRqeklgpnhSDVAESLKNLAGLLQDQAKYDEAKTYYERAIQI 99
                777779***********99999998998866666***************************9976 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0082
   PF13432.1   3 lArallraGdydeAlaaleaalala 27 
                 lA +l ++ +ydeA  ++e+a+  +
  MMETSP0890-20130614|5872_1  76 LAGLLQDQAKYDEAKTYYERAIQIW 100
                 7888889999999999999998766 PP

  == domain 4    score: 30.4 bits;  conditional E-value: 8.1e-10
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraala 59 
                 lA+++ ++G+y +A +++e+a++          P+ a  l +la +l ++g++deA  ++++ l+
  MMETSP0890-20130614|5872_1 118 LADLFQDQGKYNQAKPLYERAVEIGektlgpnhPDVATGLNNLALLLKAQGNYDEAKPYYERTLR 182
                 89****************************99999*************************99875 PP

  == domain 5    score: 27.2 bits;  conditional E-value: 8.6e-09
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalal 60 
                 lA++l ++G+ydeA +++e+ l+             a +l +lae+l  +g++deA  ++++a+++
  MMETSP0890-20130614|5872_1 160 LALLLKAQGNYDEAKPYYERTLRILeqiyglnhQAVATVLNNLAELLNNQGKYDEAKPFYERAIQI 225
                 8999**************88888887998887766***************************9976 PP

  == domain 6    score: 26.8 bits;  conditional E-value: 1.1e-08
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57 
                 lA++l ++G+ydeA + +e+a+  +        Pe a  l +la +l ++g++ eA+ l+r+a
  MMETSP0890-20130614|5872_1 202 LAELLNNQGKYDEAKPFYERAIQIWekvyghdhPEVALGLSNLAGLLRKQGKYTEAELLYRRA 264
                 7888889**************************************************999997 PP

  == domain 7    score: 22.4 bits;  conditional E-value: 2.6e-07
   PF13432.1   3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58 
                 lA +l ++G+y eA+ ++++a a +        P  a  l +la +l ++g++deA   +++a+
  MMETSP0890-20130614|5872_1 244 LAGLLRKQGKYTEAELLYRRAFAMDektvglnhPTLAIHLNNLAFLLSAQGKYDEAKSSYERAI 307
                 7999*********************9999998888**********************7777775 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00054      0.25       9      33 ..      24      48 ..      20      49 .. 0.92
   2 ?    3.4   0.0       0.2        95      11      33 ..      65      90 ..      52      91 .. 0.84
   3 ?    4.6   0.2     0.087        41       2      33 ..      93     132 ..      92     133 .. 0.60
   4 !   16.8   0.1     1e-05    0.0049       2      33 ..     135     174 ..     134     175 .. 0.69
   5 !   14.8   0.1   4.4e-05     0.021      13      33 ..     196     216 ..     191     217 .. 0.92
   6 ?    5.4   0.0     0.048        23       9      33 ..     234     258 ..     218     259 .. 0.68
   7 !   18.4   0.0   3.2e-06    0.0015       8      33 ..     275     300 ..     269     301 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00054
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a a+n LA+ll+++G++ +A+
  MMETSP0890-20130614|5872_1 24 HPKVAKALNHLALLLHAQGEYVKAK 48
                68889*****************996 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.2
   PF13431.1 11 nn...adaynnLAelllnnGdleeAe 33
                n+   a+++ nLA ll+++ +++eA+
  MMETSP0890-20130614|5872_1 65 NHsdvAESLKNLAGLLQDQAKYDEAK 90
                5444589999*************997 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.087
   PF13431.1   2 yekaleld.....Pnn...adaynnLAelllnnGdleeAe 33 
                 ye+a+++       ++   a+ +  LA l++++G++ +A+
  MMETSP0890-20130614|5872_1  93 YERAIQIWekvygHDHfqvANGLGKLADLFQDQGKYNQAK 132
                 6666666533333444333344447788888*****9996 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 1e-05
   PF13431.1   2 yekaleld.....Pnn...adaynnLAelllnnGdleeAe 33 
                 ye+a+e+      Pn+   a  +nnLA+ll+++G+++eA+
  MMETSP0890-20130614|5872_1 135 YERAVEIGektlgPNHpdvATGLNNLALLLKAQGNYDEAK 174
                 666666633344455522277778**************97 PP

  == domain 5    score: 14.8 bits;  conditional E-value: 4.4e-05
   PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                 a ++nnLAell n+G+++eA+
  MMETSP0890-20130614|5872_1 196 ATVLNNLAELLNNQGKYDEAK 216
                 5689***************97 PP

  == domain 6    score: 5.4 bits;  conditional E-value: 0.048
   PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                 +P+ a  + nLA ll ++G++ eAe
  MMETSP0890-20130614|5872_1 234 HPEVALGLSNLAGLLRKQGKYTEAE 258
                 3666777889***********9997 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 3.2e-06
   PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                 ++P+ a  +nnLA ll+++G+++eA+
  MMETSP0890-20130614|5872_1 275 NHPTLAIHLNNLAFLLSAQGKYDEAK 300
                 58**********************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.015       6.9       2      30 ..      29      57 ..      28      73 .. 0.78
   2 !    9.1   0.2    0.0044       2.1       4      30 ..      73      99 ..      70     103 .. 0.88
   3 !   13.0   0.0   0.00023      0.11       3      38 ..     114     154 ..     112     158 .. 0.81
   4 !   11.5   0.1   0.00072      0.34       4      29 ..     157     182 ..     154     192 .. 0.89
   5 !   12.4   0.0   0.00036      0.17       4      31 ..     199     226 ..     195     242 .. 0.83
   6 !   11.6   0.2   0.00069      0.33       4      33 ..     241     270 ..     235     276 .. 0.87
   7 ?    7.1   0.0     0.018       8.6       6      28 ..     285     307 ..     279     309 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.015
   PF13428.1  2 eallalarallalGdpdeAiallrralal 30
                +al  la +l a+G++ +A  l +ra++ 
  MMETSP0890-20130614|5872_1 29 KALNHLALLLHAQGEYVKAKPLHERAVRI 57
                578889********************973 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0044
   PF13428.1  4 llalarallalGdpdeAiallrralal 30
                l  la +l ++  +deA  +++ra++ 
  MMETSP0890-20130614|5872_1 73 LKNLAGLLQDQAKYDEAKTYYERAIQI 99
                6789********************986 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 0.00023
   PF13428.1   3 allalarallalGdpdeAiallrrala.....laPddaeal 38 
                  l +la+++ ++G + +A  l++ra++     l+P+++++ 
  MMETSP0890-20130614|5872_1 114 GLGKLADLFQDQGKYNQAKPLYERAVEigektLGPNHPDVA 154
                 6789**********************966655567777665 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00072
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l  la +l a+G++deA  +++r l+
  MMETSP0890-20130614|5872_1 157 LNNLALLLKAQGNYDEAKPYYERTLR 182
                 5679*******************887 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 0.00036
   PF13428.1   4 llalarallalGdpdeAiallrralala 31 
                 l  la++l ++G +deA   ++ra++  
  MMETSP0890-20130614|5872_1 199 LNNLAELLNNQGKYDEAKPFYERAIQIW 226
                 5689********************9965 PP

  == domain 6    score: 11.6 bits;  conditional E-value: 0.00069
   PF13428.1   4 llalarallalGdpdeAiallrralalaPd 33 
                 l  la +l+ +G + eA+ l+rra a + +
  MMETSP0890-20130614|5872_1 241 LSNLAGLLRKQGKYTEAELLYRRAFAMDEK 270
                 6689********************998876 PP

  == domain 7    score: 7.1 bits;  conditional E-value: 0.018
   PF13428.1   6 alarallalGdpdeAiallrral 28 
                  la +l a+G +deA   ++ra+
  MMETSP0890-20130614|5872_1 285 NLAFLLSAQGKYDEAKSSYERAI 307
                 6999*****************97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.8   0.00013     0.062       5      84 .]       2      96 ..       1      96 [. 0.68
   2 !   18.2   0.1   3.8e-06    0.0018       3      83 ..      91     179 ..      89     180 .. 0.82
   3 !   10.5   0.3   0.00095      0.45       2      48 ..     167     219 ..     166     221 .. 0.73
   4 !   22.6   0.1   1.6e-07   7.4e-05       5      84 .]     219     306 ..     216     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHCCC-ST.....-H...HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHHH CS
   PF12895.2  5 yknAlflaekllaespk.....dp...edaylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLeka 84
                y++A  ++e +l+ +        p   ++ +   lAl l  +gey +A  l ++      ++l +++ + +     lA  l ++ kydeA + +e+a
  MMETSP0890-20130614|5872_1  2 YDKAKPHYECALKICEDkfgpdHPkvaKALNH--LALLLHAQGEYVKAKPLHERavrirqEKLGPNHSDVAEslkNLAGLLQDQAKYDEAKTYYERA 96
                66677777777777765555431233223344..6**********88877776688888888888884444432355889999999******99985 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 3.8e-06
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2   3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83 
                   y+ A+ + ek++  ++++  +  l  lA  ++ +g+y++A  l+++      + l +++++ +     lA  l ++g ydeA   +e+
  MMETSP0890-20130614|5872_1  91 TYYERAIQIWEKVYGHDHFQ-VANGLGKLADLFQDQGKYNQAKPLYERaveigeKTLGPNHPDVATglnNLALLLKAQGNYDEAKPYYER 179
                 579*************9975.33344445*****************99*****999999**9999954444566668888****888876 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00095
                 TT-HHHHHHHHHHHCCC-ST....-H..HHHCHHHHHHHHHH---HHHHHHHH CS
   PF12895.2   2 qhnyknAlflaekllaespk....dp..edaylyalAlclylngeykrAyell 48 
                 q+ny++A  ++e+ l    +    ++   +++l +lA+ l ++g+y++A  ++
  MMETSP0890-20130614|5872_1 167 QGNYDEAKPYYERTLRILEQiyglNHqaVATVLNNLAELLNNQGKYDEAKPFY 219
                 788888888888888888776665322244466679***********997666 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH...HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2   5 yknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk......leldssslgcryll...ArcllklgkydeAiavLeka 84 
                 y+ A+ + ek++  ++  p  +  l +lA  l ++g+y++A  l+r+      + +  ++++ ++ l   A  l ++gkydeA + +e+a
  MMETSP0890-20130614|5872_1 219 YERAIQIWEKVYGHDH--PeVALGLSNLAGLLRKQGKYTEAELLYRRafamdeKTVGLNHPTLAIHLnnlAFLLSAQGKYDEAKSSYERA 306
                 899***********98..5377788889*****************99****9866666887777755302566669*********99985 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0054       2.6       3      20 ..      30      47 ..      28      53 .. 0.85
   2 ?   -0.1   0.0       3.4   1.6e+03       7      26 .]     118     137 ..     113     137 .. 0.86
   3 !    9.5   0.0    0.0027       1.3       4      20 ..     157     173 ..     154     178 .. 0.90
   4 !   10.1   0.0    0.0018      0.86       4      26 .]     199     221 ..     196     221 .. 0.85
   5 ?    4.1   0.1      0.15        72       3      21 ..     240     258 ..     238     263 .. 0.84
   6 !    9.5   0.0    0.0028       1.3       4      22 ..     283     301 ..     280     305 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0054
                HH---HHHHHH------- CS
   PF07721.9  3 allaLArallalGdldeA 20
                al  LA +l+a+G++  A
  MMETSP0890-20130614|5872_1 30 ALNHLALLLHAQGEYVKA 47
                6678**********9988 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 3.4
                 -HHHHHH-------HHHHHT CS
   PF07721.9   7 LArallalGdldeAraller 26 
                 LA + +++G + +A  l er
  MMETSP0890-20130614|5872_1 118 LADLFQDQGKYNQAKPLYER 137
                 899999***99999988886 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0027
                 H---HHHHHH------- CS
   PF07721.9   4 llaLArallalGdldeA 20 
                 l +LA +l a+G++deA
  MMETSP0890-20130614|5872_1 157 LNNLALLLKAQGNYDEA 173
                 569*************9 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.0018
                 H---HHHHHH-------HHHHHT CS
   PF07721.9   4 llaLArallalGdldeAraller 26 
                 l +LA++l  +G +deA    er
  MMETSP0890-20130614|5872_1 199 LNNLAELLNNQGKYDEAKPFYER 221
                 679**************877775 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.15
                 HH---HHHHHH-------H CS
   PF07721.9   3 allaLArallalGdldeAr 21 
                  l++LA +l  +G + eA+
  MMETSP0890-20130614|5872_1 240 GLSNLAGLLRKQGKYTEAE 258
                 689***************8 PP

  == domain 6    score: 9.5 bits;  conditional E-value: 0.0028
                 H---HHHHHH-------HH CS
   PF07721.9   4 llaLArallalGdldeAra 22 
                 l +LA +l a+G +deA  
  MMETSP0890-20130614|5872_1 283 LNNLAFLLSAQGKYDEAKS 301
                 669**************65 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       3.1   1.5e+03       5      20 ..      33      48 ..      30      56 .. 0.86
   2 !   11.4   0.2   0.00067      0.31       6      28 ..      77      98 ..      75     100 .. 0.88
   3 !    8.2   0.0    0.0071       3.4       5      28 ..     117     140 ..     117     141 .. 0.92
   4 !   11.8   0.0   0.00049      0.23       5      27 ..     159     181 ..     159     183 .. 0.90
   5 !    9.3   0.0    0.0031       1.5       5      28 ..     201     224 ..     201     226 .. 0.92
   6 ?    3.6   0.2      0.21        97       5      26 ..     243     264 ..     240     270 .. 0.84
   7 !    9.9   0.0     0.002      0.96       5      28 ..     285     308 ..     285     310 .] 0.89

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAl 20
                +lal++ ++g++ +A+
  MMETSP0890-20130614|5872_1 33 HLALLLHAQGEYVKAK 48
                5899999999999997 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00067
                HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                ++l+++++ ++deA++++er i+
  MMETSP0890-20130614|5872_1 77 AGLLQDQA-KYDEAKTYYERAIQ 98
                57889989.***********997 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 kla +++ +g++ +A+ ++er ++
  MMETSP0890-20130614|5872_1 117 KLADLFQDQGKYNQAKPLYERAVE 140
                 689999999************986 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 0.00049
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerli 27 
                 +lal+++++g++deA+ ++er +
  MMETSP0890-20130614|5872_1 159 NLALLLKAQGNYDEAKPYYERTL 181
                 699*****************965 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la+++ ++g++deA+  +er i+
  MMETSP0890-20130614|5872_1 201 NLAELLNNQGKYDEAKPFYERAIQ 224
                 689999999************997 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerl 26 
                 +la +++k+g+++eA  +++r 
  MMETSP0890-20130614|5872_1 243 NLAGLLRKQGKYTEAELLYRRA 264
                 7788889999*****9999885 PP

  == domain 7    score: 9.9 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la ++ ++g++deA+  +er i+
  MMETSP0890-20130614|5872_1 285 NLAFLLSAQGKYDEAKSSYERAIN 308
                 5788888999***********997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2    0.0006      0.29       4      38 ..      46     103 ..      43     107 .. 0.71
   2 !   10.0   0.5    0.0012      0.55       2      38 ..     128     187 ..     127     193 .. 0.91
   3 !    8.6   0.0    0.0031       1.5      17      38 ..     208     229 ..     201     236 .. 0.91
   4 ?    0.2   0.0       1.3   6.3e+02      18      31 ..     251     264 ..     249     267 .. 0.88
   5 !    7.3   0.1    0.0082       3.9      18      34 ..     293     309 ..     279     310 .] 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHHHTT.......................-HHHHHHHHHHHHHHHHHH CS
  PF04212.13   4 kAlelikkAveaDeag.......................kyeeAlelYkeAlelLlqa 38 
                 kA++l  +Av++ +++                       ky+eA ++Y+ A+++++++
  MMETSP0890-20130614|5872_1  46 KAKPLHERAVRIRQEKlgpnhsdvaeslknlagllqdqaKYDEAKTYYERAIQIWEKV 103
                 566666666666555555666666666666666666666***************9875 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHTT.......................-HHHHHHHHHHHHHHHHHH CS
  PF04212.13   2 lskAlelikkAveaDeag.......................kyeeAlelYkeAlelLlqa 38 
                 +++A++l  +Ave++e+                        +y+eA  +Y+  l +L+q+
  MMETSP0890-20130614|5872_1 128 YNQAKPLYERAVEIGEKTlgpnhpdvatglnnlalllkaqgNYDEAKPYYERTLRILEQI 187
                 68999999999999998888999999999999999999999***************9985 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0031
                 HTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13  17 eagkyeeAlelYkeAlelLlqa 38 
                 ++gky+eA   Y+ A+++++++
  MMETSP0890-20130614|5872_1 208 NQGKYDEAKPFYERAIQIWEKV 229
                 78****************9876 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 1.3
                 TT-HHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeA 31 
                 +gky eA  lY+ A
  MMETSP0890-20130614|5872_1 251 QGKYTEAELLYRRA 264
                 79*********998 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0082
                 TT-HHHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAlel 34 
                 +gky+eA  +Y+ A+++
  MMETSP0890-20130614|5872_1 293 QGKYDEAKSSYERAINI 309
                 79*************97 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.45   2.1e+02      42      84 ..      30      72 ..      24      77 .. 0.84
   2 ?    4.0   0.0     0.038        18      41      76 ..      71     106 ..      66     114 .. 0.88
   3 ?    2.6   0.0       0.1        49      41      76 ..     113     148 ..     108     155 .. 0.85
   4 ?    4.9   0.0      0.02       9.5      42      74 ..     156     188 ..     148     197 .. 0.88
   5 !    9.8   0.0   0.00067      0.32      43      78 ..     199     234 ..     195     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.45
   PF04910.9 42 tLlqlsevyreqgdfevAndlieraLfilervfhpsFspllln 84
                +L  l+ +++ qg++ +A  l era+ i ++ + p+ s + ++
  MMETSP0890-20130614|5872_1 30 ALNHLALLLHAQGEYVKAKPLHERAVRIRQEKLGPNHSDVAES 72
                68889999******************99999988888776555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.038
   PF04910.9  41 dtLlqlsevyreqgdfevAndlieraLfilervfhp 76 
                 ++L +l+ +++ q ++ +A ++ era+ i e+v  +
  MMETSP0890-20130614|5872_1  71 ESLKNLAGLLQDQAKYDEAKTYYERAIQIWEKVYGH 106
                 789999************************999754 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.1
   PF04910.9  41 dtLlqlsevyreqgdfevAndlieraLfilervfhp 76 
                 ++L +l+++++ qg++++A  l era+ i e+ + p
  MMETSP0890-20130614|5872_1 113 NGLGKLADLFQDQGKYNQAKPLYERAVEIGEKTLGP 148
                 678899********************9777776665 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.02
   PF04910.9  42 tLlqlsevyreqgdfevAndlieraLfilervf 74 
                 +L +l+ +++ qg++ +A  + er L ile++ 
  MMETSP0890-20130614|5872_1 156 GLNNLALLLKAQGNYDEAKPYYERTLRILEQIY 188
                 7899*************************9986 PP

  == domain 5    score: 9.8 bits;  conditional E-value: 0.00067
   PF04910.9  43 LlqlsevyreqgdfevAndlieraLfilervfhpsF 78 
                 L +l+e++++qg++ +A  + era+ i e+v  ++ 
  MMETSP0890-20130614|5872_1 199 LNNLAELLNNQGKYDEAKPFYERAIQIWEKVYGHDH 234
                 789**************************9987776 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.6   4.5e+03      25      33 ..      52      60 ..      52      64 .. 0.76
   2 ?    2.2   0.0       0.2        93      16      35 ..      85     104 ..      73     107 .. 0.87
   3 !   10.8   0.0   0.00041      0.19       5      37 ..     116     148 ..     115     149 .. 0.91
   4 ?    2.5   0.0      0.16        75      14      35 ..     167     188 ..     166     190 .. 0.91
   5 ?    2.9   0.0      0.12        57       3      35 ..     198     230 ..     196     233 .. 0.86
   6 ?    0.9   0.0      0.54   2.5e+02      14      30 ..     293     309 ..     292     309 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 9.6
   PF10516.4 25 rkaLeLreq 33
                ++a+ +r++
  MMETSP0890-20130614|5872_1 52 ERAVRIRQE 60
                589999998 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.2
   PF10516.4  16 nFpqAveDlrkaLeLreqll 35 
                 ++++A + +++a+++ e+++
  MMETSP0890-20130614|5872_1  85 KYDEAKTYYERAIQIWEKVY 104
                 89*************99988 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00041
   PF10516.4   5 dlLGEiSlEnEnFpqAveDlrkaLeLreqllpp 37 
                  +L+++++ +++++qA   +++a+e+ e++l p
  MMETSP0890-20130614|5872_1 116 GKLADLFQDQGKYNQAKPLYERAVEIGEKTLGP 148
                 59************************9988765 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.16
   PF10516.4  14 nEnFpqAveDlrkaLeLreqll 35 
                 ++n+++A   +++ L + eq++
  MMETSP0890-20130614|5872_1 167 QGNYDEAKPYYERTLRILEQIY 188
                 689*****************98 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.12
   PF10516.4   3 vydlLGEiSlEnEnFpqAveDlrkaLeLreqll 35 
                 v+  L+E+   ++++++A   +++a+++ e+++
  MMETSP0890-20130614|5872_1 198 VLNNLAELLNNQGKYDEAKPFYERAIQIWEKVY 230
                 6777888888999**************999887 PP

  == domain 6    score: 0.9 bits;  conditional E-value: 0.54
   PF10516.4  14 nEnFpqAveDlrkaLeL 30 
                 ++++++A + +++a+++
  MMETSP0890-20130614|5872_1 293 QGKYDEAKSSYERAINI 309
                 579***********997 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0027       1.3      60      82 ..      18      40 ..       5      42 .. 0.86
   2 ?   -1.3   0.0       5.7   2.7e+03       4      23 ..      71      90 ..      68     125 .. 0.72
   3 ?    1.6   0.0       0.7   3.3e+02      62      81 ..     146     165 ..     118     168 .. 0.72
   4 ?    6.7   0.0     0.018       8.3      25      82 ..     193     250 ..     179     252 .. 0.79
   5 ?    1.8   0.0      0.61   2.9e+02      65      82 ..     275     292 ..     266     294 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0027
   PF14357.1 60 erFeaeHPklagtlrnildsLan 82
                ++F  +HPk+a++l++++  L+ 
  MMETSP0890-20130614|5872_1 18 DKFGPDHPKVAKALNHLALLLHA 40
                68999************999975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 5.7
   PF14357.1  4 elLekLheeLeqtdsldeet 23
                e L++L   L+++ + de++
  MMETSP0890-20130614|5872_1 71 ESLKNLAGLLQDQAKYDEAK 90
                56666666666666666654 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.7
   PF14357.1  62 FeaeHPklagtlrnildsLa 81 
                    +HP++a  l+n++  L+
  MMETSP0890-20130614|5872_1 146 LGPNHPDVATGLNNLALLLK 165
                 5568**********999886 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.018
   PF14357.1  25 aeLkelrddieealeeedaseaedeslaerlneaver.FeaeHPklagtlrnildsLan 82 
                 ++++++ +++ e+l++ + + +e +++ er  ++ e+    +HP++a  l n++  L +
  MMETSP0890-20130614|5872_1 193 QAVATVLNNLAELLNN-QGKYDEAKPFYERAIQIWEKvYGHDHPEVALGLSNLAGLLRK 250
                 6678888999999999.777788888888888866652679**********99988876 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.61
   PF14357.1  65 eHPklagtlrnildsLan 82 
                 +HP+la  l+n++  L+ 
  MMETSP0890-20130614|5872_1 275 NHPTLAIHLNNLAFLLSA 292
                 7***********988875 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.29   1.4e+02       7      20 ..      34      47 ..      30      50 .. 0.91
   2 ?    6.3   0.8     0.016       7.4       2      27 ..      71      94 ..      70      96 .. 0.90
   3 !    9.4   0.0    0.0017      0.82       6      26 ..     117     135 ..     113     144 .. 0.83
   4 ?    2.2   0.1       0.3   1.4e+02      13      26 ..     166     177 ..     159     179 .. 0.78
   5 ?    3.9   0.4     0.092        43      13      26 ..     208     219 ..     184     222 .. 0.82
   6 !    9.2   0.1     0.002      0.92      14      35 ..     251     270 ..     247     271 .. 0.93
   7 ?    2.4   0.1      0.27   1.3e+02       8      20 ..     287     299 ..     285     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.29
                HHHHHHHTT-HHHH CS
   PF07720.7  7 lAaefynkkkyqeA 20
                lA  ++++++y +A
  MMETSP0890-20130614|5872_1 34 LALLLHAQGEYVKA 47
                799********988 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.016
                HHHHHHHHHHHHTT-HHHHHHH..HH CS
   PF07720.7  2 dylyslAaefynkkkyqeArelfsYa 27
                + l+ lA  ++++ ky+eA  +  Y+
  MMETSP0890-20130614|5872_1 71 ESLKNLAGLLQDQAKYDEAKTY--YE 94
                67999999************99..64 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0017
                 HHHHHHHHTT-HHHHHHH..H CS
   PF07720.7   6 slAaefynkkkyqeArelfsY 26 
                 +lA  f++++ky++A  l  Y
  MMETSP0890-20130614|5872_1 117 KLADLFQDQGKYNQAKPL--Y 135
                 57778**********888..5 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.3
                 HTT-HHHHHHH..H CS
   PF07720.7  13 nkkkyqeArelfsY 26 
                 ++++y+eA  +  Y
  MMETSP0890-20130614|5872_1 166 AQGNYDEAKPY--Y 177
                 79******877..4 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.092
                 HTT-HHHHHHH..H CS
   PF07720.7  13 nkkkyqeArelfsY 26 
                 n++ky+eA  +  Y
  MMETSP0890-20130614|5872_1 208 NQGKYDEAKPF--Y 219
                 8*******777..4 PP

  == domain 6    score: 9.2 bits;  conditional E-value: 0.002
                 TT-HHHHHHH..HHHHHHH-TT CS
   PF07720.7  14 kkkyqeArelfsYallaildke 35 
                 ++ky+eA+ l  Y+ ++++d++
  MMETSP0890-20130614|5872_1 251 QGKYTEAELL--YRRAFAMDEK 270
                 8*********..99***99976 PP

  == domain 7    score: 2.4 bits;  conditional E-value: 0.27
                 HHHHHHTT-HHHH CS
   PF07720.7   8 AaefynkkkyqeA 20 
                 A+ + +++ky+eA
  MMETSP0890-20130614|5872_1 287 AFLLSAQGKYDEA 299
                 5555589*****9 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.8   5.8e-06    0.0027      56     184 ..      36     212 ..      28     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.8e-06
  PF01935.12  56 lilDpHGEYgkalekllsekvkvitpspeakdtelkinpwsldpeelldlleelkddepaaeaqrsvleealeqaka...................keekeklssdepveklleelk.......................................kekeelrklknqairrlldklerllrkggsf 184
                 l+l ++GEY+ka+   l e+++ i+++        k+ p++ d+ e l+ l +l +d++++++ + ++e+a++ +++                    ++++k++ + p+++ + e+                                        +  e++  l++qa +++l+ l +ll+++g+ 
  MMETSP0890-20130614|5872_1  36 LLLHAQGEYVKAK--PLHERAVRIRQE--------KLGPNHSDVAESLKNLAGLLQDQAKYDEAKTYYERAIQIWEKvyghdhfqvanglgkladlFQDQGKYNQAKPLYERAVEIGektlgpnhpdvatglnnlalllkaqgnydeakpyyertlRILEQIYGLNHQAVATVLNNLAELLNNQGKY 212
                 567789*******..888888888887........*****************************************988888888888877777774455555555555555555556666688888888888876666666666666666555554444555556666666666666666655555 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   2.2    0.0013      0.61      88     160 ..      81     154 ..       2     225 .. 0.64
   2 !    8.0   0.6    0.0033       1.6      93     194 ..     170     267 ..     164     309 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0013
   PF09986.4  88 skertldeaiesYkLallcyelkkekks.kkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpie 160
                 +++ ++dea + Y  a++  e +  ++  + A  + +lA l++d+++ ++ k ++++A+e+ ++++  ++ ++ 
  MMETSP0890-20130614|5872_1  81 QDQAKYDEAKTYYERAIQIWEKVYGHDHfQVANGLGKLADLFQDQGKYNQAKPLYERAVEIGEKTLGPNHPDVA 154
                 34566777777777777775554444443777777777777777777666666666666666666554444333 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0033
   PF09986.4  93 ldeaiesYkLallc.yelkkekkskkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvigs 194
                 +dea   Y   l    ++   +++  A ++ +lA l +++++  + k f+++A+++++++y +++ ++     + +  L   L r+ g+++ea   +++ + +
  MMETSP0890-20130614|5872_1 170 YDEAKPYYERTLRIlEQIYGLNHQAVATVLNNLAELLNNQGKYDEAKPFYERAIQIWEKVYGHDHPEVA----LGLSNLA-GLLRKQGKYTEAELLYRRAFAM 267
                 566666666666653455566777889999999999999999999999999999999999998876433....3333333.3446667777777777666665 PP

>> PF01076.14  Plasmid recombination enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   6.7e+02      97     118 ..       2      23 ..       1      34 [. 0.76
   2 !    6.6   0.2      0.01       4.7      93     119 ..      82     108 ..      79     114 .. 0.89
   3 ?   -0.7   0.0       1.8   8.6e+02      89     116 ..     120     147 ..     107     150 .. 0.83
   4 ?    3.7   0.0     0.078        37      94     124 ..     167     197 ..     164     201 .. 0.86
   5 ?    4.9   0.1     0.035        16      93     118 ..     208     233 ..     193     235 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.4
  PF01076.14  97 keeakeffeealkffeekyGke 118
                 +++ak  +e alk  e+k+G +
  MMETSP0890-20130614|5872_1   2 YDKAKPHYECALKICEDKFGPD 23 
                 5789999999*********975 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.01
  PF01076.14  93 ekltkeeakeffeealkffeekyGken 119
                 ++++++eak+++e a +  e+ yG + 
  MMETSP0890-20130614|5872_1  82 DQAKYDEAKTYYERAIQIWEKVYGHDH 108
                 68999*******************986 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.8
  PF01076.14  89 keffekltkeeakeffeealkffeekyG 116
                 + f+++ ++++ak  +e a++  e++ G
  MMETSP0890-20130614|5872_1 120 DLFQDQGKYNQAKPLYERAVEIGEKTLG 147
                 5688999999999999999999999988 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.078
  PF01076.14  94 kltkeeakeffeealkffeekyGkenvlsAv 124
                 + +++eak ++e +l  +e+ yG +  + A+
  MMETSP0890-20130614|5872_1 167 QGNYDEAKPYYERTLRILEQIYGLNHQAVAT 197
                 6899*******************87766666 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.035
  PF01076.14  93 ekltkeeakeffeealkffeekyGke 118
                 ++ +++eak f+e a +  e+ yG +
  MMETSP0890-20130614|5872_1 208 NQGKYDEAKPFYERAIQIWEKVYGHD 233
                 78899*******************87 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       3.4   1.6e+03      15      28 ..      42      55 ..      28      94 .. 0.65
   2 ?    5.5   0.0     0.031        15      12      31 ..     123     142 ..     114     151 .. 0.86
   3 ?    5.0   0.1     0.045        21      14      63 ..     167     221 ..     154     226 .. 0.65
   4 !    9.6   0.3    0.0017      0.79      11      97 ..     206     302 ..     196     308 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 3.4
   PF12688.2 15 GeeakAvplYrrAl 28
                Ge  kA pl +rA 
  MMETSP0890-20130614|5872_1 42 GEYVKAKPLHERAV 55
                55555555555554 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.031
   PF12688.2  12 DstGeeakAvplYrrAlaaG 31 
                    G+ ++A plY+rA + G
  MMETSP0890-20130614|5872_1 123 QDQGKYNQAKPLYERAVEIG 142
                 557999**********9987 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.045
   PF12688.2  14 tGeeakAvplYrrAla.....aGLagarrrratiqlaSsLRnlGrveeslallea 63 
                  G+ ++A p Y+r l       GL+ +    +   la  L n G+ +e+  + e+
  MMETSP0890-20130614|5872_1 167 QGNYDEAKPYYERTLRileqiYGLNHQAVATVLNNLAELLNNQGKYDEAKPFYER 221
                 5677777777777664222224777777766677777777777777777655554 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0017
   PF12688.2  11 rDstGeeakAvplYrrAla..aGLagarrrrati...qlaSsLRnlGrveeslalleaelae.apgdelddalaaf....lALaLssagrereavai 97 
                     G+ ++A p Y+rA++  + + g+ ++ + +    la  LR  G+  e+  l +++ a   +  +l+ ++ a+    lA  Ls++g+ +ea ++
  MMETSP0890-20130614|5872_1 206 LNNQGKYDEAKPFYERAIQiwEKVYGHDHPEVALglsNLAGLLRKQGKYTEAELLYRRAFAMdEKTVGLNHPTLAIhlnnLAFLLSAQGKYDEAKSS 302
                 5678999**********8744556677777666622267889*************999866313455677766654333368889999998888665 PP

>> PF09712.5  Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6    0.0001     0.049      76     230 ..      59     232 ..      37     236 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.0001
   PF09712.5  76 kqaeeqaaaeleqvaaqfaglldtgdtasqevaaaWelpldglqrllsslslspgdglenl........plqqlreqlekllsaP..alGytreeQa....qlqeliraameYQqaleeY......leqlsevgeksverlrqeLseveasgkkltslraLyDlWvevaEeaYae 230
                 +++ + +  ++++  +++agll++ ++  +e++   e++++ ++++    +++ ++gl+ l          +q +   e++ ++    lG++    a    +l  l++a+ +Y +a   Y      leq+  +++++v+   + L+e ++++ k + ++  y + +++ E++Y++
  MMETSP0890-20130614|5872_1  59 QEKLGPNHSDVAESLKNLAGLLQD-QAKYDEAKTYYERAIQIWEKVYGHDHFQVANGLGKLadlfqdqgKYNQAKPLYERAVEIGekTLGPNHPDVAtglnNLALLLKAQGNYDEAKPYYertlriLEQIYGLNHQAVATVLNNLAELLNNQGKYDEAKPFYERAIQIWEKVYGH 232
                 455566677799999999999963.34456778899999999999999999999999999988876655334444444444444322588876654422227888999999999998877333333566677899**************************************85 PP

>> PF09094.6  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.12        57       8      30 ..      84     106 ..      80     125 .. 0.84
   2 ?    1.0   0.0      0.82   3.9e+02       9      49 ..     127     169 ..     121     173 .. 0.71
   3 ?   -0.8   0.0         3   1.4e+03       9      33 ..     169     193 ..     165     210 .. 0.71
   4 ?    3.5   0.0      0.13        63       6      30 ..     208     232 ..     204     252 .. 0.83
   5 ?    0.4   0.0       1.2   5.8e+02       9      27 ..     253     271 ..     246     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.12
                 HH-HHHHHHHHHHHHHHHHHTT- CS
   PF09094.6   8 vkYeesnemhkrmlevskklksl 30 
                 +kY+e+++ ++r +++++k+   
  MMETSP0890-20130614|5872_1  84 AKYDEAKTYYERAIQIWEKVYGH 106
                 79***************998655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.82
                 H-HHHHHHHHHHHHHHHHHTT-........HHHHHHHHHTTBG CS
   PF09094.6   9 kYeesnemhkrmlevskklksl.esekea.eeareelyraqcn 49 
                 kY++++ +++r +e+ +k     ++++++  +    l++aq+n
  MMETSP0890-20130614|5872_1 127 KYNQAKPLYERAVEIGEKTLGPnHPDVATgLNNLALLLKAQGN 169
                 9999999****99998774333133433313477788899988 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 3
                 H-HHHHHHHHHHHHHHHHHTT-... CS
   PF09094.6   9 kYeesnemhkrmlevskklkslese 33 
                  Y+e++  ++r l + +++  l+ +
  MMETSP0890-20130614|5872_1 169 NYDEAKPYYERTLRILEQIYGLNHQ 193
                 6999999999999999888776333 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.13
                 HHHH-HHHHHHHHHHHHHHHHHTT- CS
   PF09094.6   6 FlvkYeesnemhkrmlevskklksl 30 
                    kY+e++ +++r +++++k+   
  MMETSP0890-20130614|5872_1 208 NQGKYDEAKPFYERAIQIWEKVYGH 232
                 5679***************998655 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 1.2
                 H-HHHHHHHHHHHHHHHHH CS
   PF09094.6   9 kYeesnemhkrmlevskkl 27 
                 kY+e++ +++r +++ +k 
  MMETSP0890-20130614|5872_1 253 KYTEAELLYRRAFAMDEKT 271
                 9**********99988775 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3      0.69   3.2e+02     147     147 ..      73      73 ..      19     141 .. 0.58
   2 ?    5.7   0.1     0.024        11     147     172 ..     157     182 ..     125     196 .. 0.76
   3 ?    7.0   0.1    0.0093       4.4     143     173 ..     195     225 ..     180     272 .. 0.76
   4 ?    2.2   0.0      0.28   1.3e+02     147     170 ..     283     306 ..     269     309 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.69
   PF11846.3 147 i 147
                 +
  MMETSP0890-20130614|5872_1  73 L 73 
                 2 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.024
   PF11846.3 147 irrlalalallGkeeeArdamaeaaa 172
                 +++lal+l  +G+ +eA+ + +++ +
  MMETSP0890-20130614|5872_1 157 LNNLALLLKAQGNYDEAKPYYERTLR 182
                 6899*************887777644 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0093
   PF11846.3 143 rpavirrlalalallGkeeeArdamaeaaal 173
                  ++v+++la +l  +Gk +eA+   ++a  +
  MMETSP0890-20130614|5872_1 195 VATVLNNLAELLNNQGKYDEAKPFYERAIQI 225
                 57899999************97666666544 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.28
   PF11846.3 147 irrlalalallGkeeeArdamaea 170
                 +++la +l  +Gk +eA+   ++a
  MMETSP0890-20130614|5872_1 283 LNNLAFLLSAQGKYDEAKSSYERA 306
                 6899*************9888877 PP

>> PF06069.6  PerC transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.031        15       6      27 ..      83     104 ..      79     109 .. 0.87
   2 ?    4.3   0.0     0.078        37       8      27 ..     211     230 ..     204     236 .. 0.86
   3 ?   -1.0   0.1       3.5   1.6e+03       6      19 ..     251     264 ..     247     270 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.031
   PF06069.6   6 vaekLeakGlyRRaadRWaevm 27 
                  a++ eak +y Ra + W +v 
  MMETSP0890-20130614|5872_1  83 QAKYDEAKTYYERAIQIWEKVY 104
                 59999**************996 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.078
   PF06069.6   8 ekLeakGlyRRaadRWaevm 27 
                 ++ eak +y Ra + W +v 
  MMETSP0890-20130614|5872_1 211 KYDEAKPFYERAIQIWEKVY 230
                 6779*************996 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 3.5
   PF06069.6   6 vaekLeakGlyRRa 19 
                   ++ ea+ lyRRa
  MMETSP0890-20130614|5872_1 251 QGKYTEAELLYRRA 264
                 5678899999**99 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.058        28       6      42 ..      65     101 ..      60     112 .. 0.87
   2 ?    0.3   0.0       1.1   5.2e+02      19      39 ..     120     140 ..     103     144 .. 0.67
   3 ?    5.5   0.0     0.027        13       8      42 ..     193     227 ..     186     238 .. 0.85
   4 ?   -1.9   0.0       5.5   2.6e+03      60      66 ..     256     262 ..     253     269 .. 0.74
   5 ?   -0.8   0.0       2.5   1.2e+03      16      39 ..     285     308 ..     278     309 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.058
   PF10975.3   6 rlqeleqklkqleerleeleqqdpesrlYsrAaklve 42 
                 + ++++++lk+l+  l+  ++ d+++  Y+rA+++ e
  MMETSP0890-20130614|5872_1  65 NHSDVAESLKNLAGLLQDQAKYDEAKTYYERAIQIWE 101
                 55788999999999******************99765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.1
   PF10975.3  19 erleeleqqdpesrlYsrAak 39 
                 +  +   + +++++lY+rA++
  MMETSP0890-20130614|5872_1 120 DLFQDQGKYNQAKPLYERAVE 140
                 444444455667778999986 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.027
   PF10975.3   8 qeleqklkqleerleeleqqdpesrlYsrAaklve 42 
                 q+++  l++l+e l++  + d+++++Y+rA+++ e
  MMETSP0890-20130614|5872_1 193 QAVATVLNNLAELLNNQGKYDEAKPFYERAIQIWE 227
                 67888899999999999999**********99866 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 5.5
   PF10975.3  60 EAELlls 66 
                 EAELl++
  MMETSP0890-20130614|5872_1 256 EAELLYR 262
                 7777764 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 2.5
   PF10975.3  16 qleerleeleqqdpesrlYsrAak 39 
                 +l++ l+   + d+++ +Y+rA+ 
  MMETSP0890-20130614|5872_1 285 NLAFLLSAQGKYDEAKSSYERAIN 308
                 55555666667788999****985 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.8   8.4e+02      33      63 ..      67      97 ..      49     101 .. 0.83
   2 ?    3.9   0.0     0.058        27      35      64 ..     111     140 ..     107     150 .. 0.90
   3 ?   -0.3   0.0       1.1   5.3e+02      35      63 ..     153     181 ..     149     194 .. 0.84
   4 ?    1.0   0.0      0.46   2.2e+02      35      63 ..     195     223 ..     190     225 .. 0.87
   5 ?   -1.5   0.0       2.6   1.2e+03      35      63 ..     237     265 ..     234     291 .. 0.77
   6 ?   -2.4   0.0       5.1   2.4e+03      46      62 ..     290     306 ..     278     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.8
   PF10602.4 33 esirraledlaehYlkigdleeAlkaysrar 63
                +++++ l++la    +  +++eA  +y+ra 
  MMETSP0890-20130614|5872_1 67 SDVAESLKNLAGLLQDQAKYDEAKTYYERAI 97
                5677788888888888899999999999976 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.058
   PF10602.4  35 irraledlaehYlkigdleeAlkaysrard 64 
                 ++++l +la+ + + g++++A  +y+ra++
  MMETSP0890-20130614|5872_1 111 VANGLGKLADLFQDQGKYNQAKPLYERAVE 140
                 788999*********************976 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1.1
   PF10602.4  35 irraledlaehYlkigdleeAlkaysrar 63 
                 ++ +l++la      g+++eA  +y+r++
  MMETSP0890-20130614|5872_1 153 VATGLNNLALLLKAQGNYDEAKPYYERTL 181
                 6778888888999999**********976 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.46
   PF10602.4  35 irraledlaehYlkigdleeAlkaysrar 63 
                 ++  l++lae   + g+++eA  +y+ra 
  MMETSP0890-20130614|5872_1 195 VATVLNNLAELLNNQGKYDEAKPFYERAI 223
                 566788999*****************986 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 2.6
   PF10602.4  35 irraledlaehYlkigdleeAlkaysrar 63 
                 ++ +l +la    k g++ eA  +y+ra+
  MMETSP0890-20130614|5872_1 237 VALGLSNLAGLLRKQGKYTEAELLYRRAF 265
                 56677788888889999999999999965 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 5.1
   PF10602.4  46 YlkigdleeAlkaysra 62 
                     g+++eA   y+ra
  MMETSP0890-20130614|5872_1 290 LSAQGKYDEAKSSYERA 306
                 55668999999999987 PP

>> PF09145.5  Ubiquitin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.049        23      20      32 ..      86      98 ..      80     104 .. 0.86
   2 ?    3.5   0.0      0.12        57      19      31 ..     169     181 ..     160     188 .. 0.85
   3 ?    2.7   0.0      0.21     1e+02      20      32 ..     212     224 ..     202     230 .. 0.85
   4 ?    0.1   0.0       1.4   6.5e+02      17      31 ..     293     307 ..     285     309 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.049
                SHHHHHHHHHH-S CS
   PF09145.5 20 idkAseYYergit 32
                 d+A  YYer i+
  MMETSP0890-20130614|5872_1 86 YDEAKTYYERAIQ 98
                69********985 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.12
                 -SHHHHHHHHHH- CS
   PF09145.5  19 sidkAseYYergi 31 
                 + d+A  YYer  
  MMETSP0890-20130614|5872_1 169 NYDEAKPYYERTL 181
                 679*******976 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.21
                 SHHHHHHHHHH-S CS
   PF09145.5  20 idkAseYYergit 32 
                  d+A  +Yer i+
  MMETSP0890-20130614|5872_1 212 YDEAKPFYERAIQ 224
                 699*******985 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 1.4
                 ---SHHHHHHHHHH- CS
   PF09145.5  17 GLsidkAseYYergi 31 
                     d+A + Yer i
  MMETSP0890-20130614|5872_1 293 QGKYDEAKSSYERAI 307
                 556799999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.96u 0.43s 00:00:01.39 Elapsed: 00:00:00.86
# Mc/sec: 863.80
//
Query:       MMETSP0890-20130614|5877_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       818  (0.0598303); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.80
# Mc/sec: 844.72
//
Query:       MMETSP0890-20130614|5875_1  [L=733]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-69  234.4   0.0    2.6e-69  233.8   0.0    1.1  1  PF03639.8 Glycosyl hydrolase family 81


Domain annotation for each model (and alignments):
>> PF03639.8  Glycosyl hydrolase family 81
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.8   0.0   1.9e-73   2.6e-69     263     684 ..     206     649 ..     187     660 .. 0.88

  Alignments for each domain:
  == domain 1    score: 233.8 bits;  conditional E-value: 1.9e-73
   PF03639.8 263 yefsyttaGysasGstlmfalPhhkksfssdmqe.tvldlslastikGvlvgyltdswvlkkslprqvgfdpvsvtlgskkeyskeslqeiiealakdvnlsdseaestldssYfsgKiiakyarillvaeeilqdevltkilleklkiaeerllgneqvypllYDtkwkGliskglGskssqaDfGntyYnDHHfHygYfvyaiA.vialvDp.sWlennrdqvnsLlrDy...............anpsesdsyfarlRnFDlFkgHsWAaGlfesgdGkneEstsEdvnalYaakLlGlvigdkklveranlvltilknalksyfyvkednavqPkeiignkvsGilfsnkiDsatyFgaeeeykhgihllPitpvssvlrse.tfvkqevnak...lepii...dsveegWkGilyanealyDkkgayekfka.stfddansld 684
                  + +   + ++a  ++l++alPhh + +  d q+   +++s    +kG+l+ + + +w + + l + + f +      s+++  + +l++ +      + + d ++ ++l ssY sgK   + a ++l  + +   +   k   + l+   ++l+ +     l+YD +++G+++k+ G ++ qaDfG ++YnDHHfHygY+++a+A v+  + p s +  +++   ++l D+               ++++ +++yf+  R  D+++gHsWA+Glfe   Gkn+Es+sE+   +Y + LlG++++d +l + + l+l+++  a++ y++v   n  +P+ + +n v+ i+  n   s t+Fg+++     ++ +P tp+s+ l ++  ++++ v++    l+++    d   + W+ +l  + a+ D+ +a+  + a s+ +   +ld
  MMETSP0890-20130614|5875_1 206 KNTNHRSQYETARRDLLLLALPHHVAVLQVDPQIdIPIQKSPFTCVKGDLTYVKGSTWRMLEGL-TAIEFSAPRRATPSMLNPTQSALKKDVLS-LPPIGAFDEHKLAKLTSSYGSGKRATQLALLALACNSLNLIDEAKKAAETTLRALNPWLDPDYISSLLVYDKSYGGIVTKT-GLENIQADFGQGWYNDHHFHYGYHLFAAAcVLHILGPhSLTSTQKAALAAMLGDVateipktipgkrtirRGNAPNQNYFPVARHKDFYEGHSWASGLFEMPMGKNQESSSEATHCYYGVSLLGVATNDYELRDWGRLLLAMEMRAARYYWHVSGFNR-YPEPFGSNVVVSIIGGNLLSSQTFFGTNKLFAILVNSMPFTPISEDLLTPpRYIHKCVEQAvaeLPSLHdddDPALSSWRALLLQLVAITDPTQAFSVIIAlSMANPPPQLD 649
                 344455566788889***************8886156999999*****************7744.67999888888889977777777664433.356888899999**************************99999*************************************5.**************************99857788889555666999999********************988888999***************************************************************************87775.9******************************9**************999889**999987611156666433346689******************9987756655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.39s 00:00:01.44 Elapsed: 00:00:01.67
# Mc/sec: 1051.81
//
Query:       MMETSP0890-20130614|5876_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-65  220.3   0.5    6.3e-65  218.9   0.3    1.5  1  PF03781.11 Formylglycine-generating sulfatase enzyme


Domain annotation for each model (and alignments):
>> PF03781.11  Formylglycine-generating sulfatase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   0.3   4.6e-69   6.3e-65       5     259 ..      60     366 ..      57     367 .. 0.91

  Alignments for each domain:
  == domain 1    score: 218.9 bits;  conditional E-value: 4.6e-69
                 -EEE----EEE--.----TT----S-EEEB-.--EEE-SS--BHHHHHHHHHH-----H..........................---TTEEEE---BTTB---B-------..TTSB--S--HHHHHHHHHH---......B---HHHHHHHH--..------S-----S----..........................------TTT-B-----...--S.---TT-S-B.-----B-------EEEEEE--.THHHH--SBS-..--------EEEE---TT--T.T--TTSTT--.EEE-TT----------E CS
  PF03781.11   5 mvlipgGsfemGs.eektandeeapahevtv.raFaidkteVTnaqyaafveatgyete..........................aasqwwaeveganvrhpegrksdikkr..adhPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArg..gkkgreypwgdelkpak..........................niwqGslakfekeaaaadsqngrtspvgsfpp.nalGlyDmaGNvwEWtsdwyk.kyalapaeels..qeaekgelrvvkGgswlkae.lssllraafrasaetpdtaasdvGfRlv 259
                  v++++G+f+mGs  +k   d e+p + v++ r+F+id +e Tn+++a+f++ tgyete                             +ww +v+g+ +++p+g+ s+ +kr   + Pvv+Vsw+Da aY+ w+g       rLPteaEweyAArg  g +g    + de+++++                          niwqG   +f++ ++++d++ + +spvgsfpp  + G++D++GNvwEW++dw+   ++ +++  l+  +   +g  ++ kGgs+l++  +++++r+a+r+++ tpd+a+s+ GfR+v
  MMETSP0890-20130614|5876_1  60 RVRLNAGEFRMGSdRPKILGDGEGPSRLVRLsRGFEIDMYETTNEDFAEFIKVTGYETEserfgwsfvfhlelteairnridqavLGTEWWLPVNGSYWKEPQGPGSNVFKRglGNAPVVQVSWNDALAYCHWIGG------RLPTEAEWEYAARGygGAAGHNSSTHDEYTKEEkkynlqnnalfpwgndllfhnnshraNIWQG---DFPTLNTRQDGFAF-VSPVGSFPPqTSTGIHDIIGNVWEWVNDWWYlPTENDAIFGLTdpKGPASGTEKLKKGGSFLCHRsYCYRYRVAARHKN-TPDSATSNNGFRCV 366
                 6999*********999999************************************************************999887778*****************99987762269********************......*************74366888888888888766888999********************9****...9*************.*********99********************95556665555411456788899**********************666.8************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:01.30
# Mc/sec: 687.57
//
Query:       MMETSP0890-20130614|5879_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-34  117.9   0.0    3.5e-34  117.3   0.0    1.3  1  PF13288.1  DXP reductoisomerase C-terminal domain
    3.7e-33  113.1   0.0    7.9e-33  112.0   0.0    1.6  1  PF08436.7  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
    1.2e-24   87.2   0.7    1.9e-24   86.5   0.5    1.4  1  PF02670.11 1-deoxy-D-xylulose 5-phosphate reductoisomerase


Domain annotation for each model (and alignments):
>> PF13288.1  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   7.6e-38   3.5e-34       2     119 ..     241     363 ..     240     365 .. 0.92

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 7.6e-38
   PF13288.1   2 gvpDMrlPIayaLayperlesgv....erldlaklgsLtFeepdlerFpclklayealeaggtapavlnaAnEvaveaFlegk.isFldIaklvekvlekvesesveeesleeileadaeaRe 119
                 g+pDMrlP  y++a+p+r+++++    +r+d+++lgs+tF++pd+ ++pc+ lay a++aggt++ +lnaAnE+a e+F ++k + +ldI+k++++++e+++++   ++sl++i+++da+aR+
  MMETSP0890-20130614|5879_1 241 GWPDMRLPLLYSVAWPKRVRMPAdqweRRFDFVQLGSMTFKAPDNIKYPCIGLAYTAGRAGGTMTGALNAANEMANEMFRDNKgLDYLDIPKVIAQTMEDHRQDFDPNPSLDTIIQVDAWARD 363
                 89****************866442223789**************************************************87669******************95599**************7 PP

>> PF08436.7  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   1.7e-36   7.9e-33       1      84 []     118     208 ..     118     208 .. 0.89

  Alignments for each domain:
  == domain 1    score: 112.0 bits;  conditional E-value: 1.7e-36
   PF08436.7   1 llPvDsEHsaifqlleeekkkevekliltasGgpfrkkeleelkkv.......tveealkHPnWkmGkkitidsatlvnkglEviEakllf 84 
                 ++P DsEHsaifq+l++    +++k+iltasGg+fr+ +++el ++         ++a++HPnW+mG+kit+dsat++nkglEviEa++lf
  MMETSP0890-20130614|5879_1 118 MTPADSEHSAIFQCLQGVPPGSLRKVILTASGGAFRDVSADELLDAcsnkpewVRQKATTHPNWDMGAKITVDSATMMNKGLEVIEAHYLF 208
                 57**************************************99976522111114578*********************************9 PP

>> PF02670.11  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.5   4.2e-28   1.9e-24      32     129 .]       2     104 ..       1     104 [. 0.93

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 4.2e-28
                 ESS-HHHHHHHHHHC..T-SEEEESSHHHHHHHHHHCHH---...-SEEE---HHHHHHHTHTT-SEEEE--------HHHHHHHH---EEEE--THHHHC-- CS
  PF02670.11  32 agsnvellaeqakef..kpklvavadeeaakelkealkekel...ktevlaGeealkelaeeeeadvvvnaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                 agsn+ella+qa+ef  ++kl+ ++d +++ elkealk+ ++   ++e+++G++a++++a+ ++advvv+++vG+aGL+pt+aai+agk+iaLANKE+L+++G
  MMETSP0890-20130614|5879_1   2 AGSNYELLAQQAAEFrdTVKLIGLSDGSKVLELKEALKRYDVdekSVEIVCGDDAAIAAATCTDADVVVTGVVGCAGLQPTVAAIEAGKDIALANKETLIAGG 104
                 799************444678999*************9865555599******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.63
# Mc/sec: 1441.62
//
Query:       MMETSP0890-20130614|5882_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-15   56.0   0.0    5.4e-15   55.4   0.0    1.2  1  PF08547.7 Complex I intermediate-associated protein 30 (CIA30)


Domain annotation for each model (and alignments):
>> PF08547.7  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0     4e-19   5.4e-15      11     147 ..       8     151 ..       2     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 4e-19
   PF08547.7  11 kwtavnDkvmGGlSksslels..kedktavFsGnlslenrgGFasvrtkkrkesldlseyeglelrvk....Gdg..rtYklnlkteskqsglsyqadfetkkgewqtvkipfsdfvptfrGrvvedapel...dlskiksiglllsd 147
                   + ++D+vmGG+S+s+l      +++++v+sG + ++ +gGF++ rt + ++++dls y+gl ++ k    +d   r +k+ ++ e++  +l+y+++   + g  ++  +pfs+f+ +   r v +a++l    l+k+  igl++s+
  MMETSP0890-20130614|5882_1   8 FLKXIDDQVMGGVSTSNLLQVqnGDNTQVVWSGLVRTD-GGGFCGTRTVRLEKPIDLSIYSGLWIQGKltsdSDIrrRVWKCSMRLEQNAGELVYSSEWI-PDG--TQCLVPFSSFKLVRGPRFVPNASPLsieLLRKVYGIGLTVSK 151
                 56889************97776756799**********.************************9987777445544478******************997.344..79***********99999******944456799999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:01.15
# Mc/sec: 663.13
//
Query:       MMETSP0890-20130614|5888_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-29   99.7   0.2    5.2e-16   57.9   0.1    2.1  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.4e-21   76.1   0.1      2e-13   50.0   0.0    2.2  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    4.4e-17   61.5   0.0    1.7e-08   34.0   0.0    2.2  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00073   19.0   0.0       0.63    9.4   0.0    2.5  2  PF04847.7  Calcipressin
  ------ inclusion threshold ------
      0.031   13.4   3.4      0.047   12.8   2.4    1.2  1  PF04935.7  Surfeit locus protein 6
      0.043   13.5   0.0       0.76    9.5   0.0    2.4  2  PF08777.6  RNA binding motif


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.1   2.3e-19   5.2e-16       1      70 []      57     126 ..      57     126 .. 0.98
   2 !   40.0   0.0   8.6e-14     2e-10       1      69 [.     160     225 ..     160     226 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 2.3e-19
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70 
                 ++ gnL++ ++ + L++ +skfG+i++i ++ d +gr++gfafV+F++  +a ++ ++l+ ++++gr+++
  MMETSP0890-20130614|5888_1  57 VYFGNLNFQTDRNFLERELSKFGEIKDILIPLDDNGRRRGFAFVTFTDDHAAHECTKELDDQEFDGRRIR 126
                 6789***************************************************************996 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 8.6e-14
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                 ++V++Lp d+ e+eL +l   +G+i  i+++r+   r +  a+V F++ +dae A ++ +g+ +++++l
  MMETSP0890-20130614|5888_1 160 IIVSGLPDDIRERELDDLYYRCGRIAYIEIFRN---RGRLEAIVAFDDIRDAEYACRQTDGMRFEKQRL 225
                 78******************************7...****************************99887 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   8.8e-17     2e-13       1      69 []      57     126 ..      57     126 .. 0.98
   2 !   24.4   0.0   8.3e-09   1.9e-05       1      63 [.     160     220 ..     160     226 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 8.8e-17
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                 +y ++l+++++   l + +s++g ++++ ip++ +gr+rgfAfv+f +  +A ++ k l+ + ++gr ir
  MMETSP0890-20130614|5888_1  57 VYFGNLNFQTDRNFLERELSKFGEIKDILIPLDDNGRRRGFAFVTFTDDHAAHECTKELDdQEFDGRRIR 126
                 789******************************99************************99*******97 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 8.3e-09
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvl 63 
                 ++v+glp ++ e +l ++  ++g++  ++i+rn   rgr +A+v f++  dA+ a ++ + + +
  MMETSP0890-20130614|5888_1 160 IIVSGLPDDIRERELDDLYYRCGRIAYIEIFRN---RGRLEAIVAFDDIRDAEYACRQTDgMRF 220
                 78******************************9...7****************99998775555 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   7.3e-12   1.7e-08       4      56 .]      74     130 ..      73     130 .. 0.93
   2 !   25.3   0.0   3.9e-09   8.8e-06       7      54 ..     180     228 ..     177     230 .. 0.96

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.3e-12
   PF13893.1   4 lfskfGkveriki.frkk...ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  +skfG++++i+i ++++   +g+Afv+f +  aA  + + l+ + ++g++++++ +
  MMETSP0890-20130614|5888_1  74 ELSKFGEIKDILIpLDDNgrrRGFAFVTFTDDHAAHECTKELDDQEFDGRRIRCNIA 130
                 69***********87777*988*******************************9875 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 3.9e-09
   PF13893.1   7 kfGkverikifrkk.ggqAfvefdtveaArkakeylngvklygktLkve 54 
                 ++G++  i ifr+  + +A v fd++++A+ a ++ +g  +  ++L+v+
  MMETSP0890-20130614|5888_1 180 RCGRIAYIEIFRNRgRLEAIVAFDDIRDAEYACRQTDGMRFEKQRLRVD 228
                 69**********9988********************************8 PP

>> PF04847.7  Calcipressin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0019       4.3      35      73 ..      98     134 ..      92     140 .. 0.85
   2 !    9.4   0.0   0.00028      0.63      11      66 ..     172     227 ..     165     228 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0019
   PF04847.7  35 vivifsseeaaeaarsksdwegeefegkklrlyfaqpln 73 
                 + v+f +++aa++  +++d  ++ef g+++r+  a p +
  MMETSP0890-20130614|5888_1  98 AFVTFTDDHAAHECTKELD--DQEFDGRRIRCNIARPRT 134
                 579**************88..89********98776665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00028
   PF04847.7  11 dklrelfeqlneivafqllksFrr..vivifsseeaaeaarsksdwegeefegkklrl 66 
                  +l +l+   ++i+ +++++  +r  +iv f++   ae a +++d  g+ fe+++lr+
  MMETSP0890-20130614|5888_1 172 RELDDLYYRCGRIAYIEIFRNRGRleAIVAFDDIRDAEYACRQTD--GMRFEKQRLRV 227
                 6899*******************94459***************66..********986 PP

>> PF04935.7  Surfeit locus protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.4   2.1e-05     0.047      17      77 ..       8      68 ..       2      85 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
   PF04935.7 17 erkerkkekrkeakkkekeqkeekeekkeeeeksskskkakkkeneekkivFskvefadge 77
                e+k+   ++++e+ +k++ +++++ +++   ++++ +k++++++++++++ F++++f+++ 
  MMETSP0890-20130614|5888_1  8 ESKDDEYRNEEEQHEKKRLAEDDAPQDAHPPPDKQIRKEESDDREAKRTVYFGNLNFQTDR 68
                222222222222222222222222233323333333337889999999*********9874 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11   2.5e+02       9      60 ..      62     118 ..      56     129 .. 0.65
   2 ?    9.5   0.0   0.00033      0.76       6      58 ..     162     216 ..     158     228 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
                 --SS--HHHHHHHT-----EEEE-------...-..--EEESS-..HHHH---TTTT CS
   PF08777.6   9 lnkelsredikelfsklgevkyvdfkegdk...e..gevrFkedeaakkalekatea 60 
                 ln ++ r+ +   +sk+ge+k + +  +d+      + v F +d+aa +  +++ + 
  MMETSP0890-20130614|5888_1  62 LNFQTDRNFLERELSKFGEIKDILIPLDDNgrrRgfAFVTFTDDHAAHECTKELDDQ 118
                 666777888888889999888765543332111322567788888888777776655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00033
                 EE---SS--HHHHHHHT-----EEEE--..--------EEESS-..HHHH---TT CS
   PF08777.6   6 lsGlnkelsredikelfsklgevkyvdf..kegdkegevrFkedeaakkalekat 58 
                 +sGl +++  +++ +l  + g ++y+++  ++g  e++v F++  +a+ a+++  
  MMETSP0890-20130614|5888_1 162 VSGLPDDIRERELDDLYYRCGRIAYIEIfrNRGRLEAIVAFDDIRDAEYACRQTD 216
                 79999999999****************856789***************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.81
# Mc/sec: 683.41
//
Query:       MMETSP0890-20130614|5884_1  [L=1528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-20   72.7   0.0    3.1e-20   71.8   0.0    1.5  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    1.1e-15   57.4   0.3    2.5e-15   56.3   0.2    1.6  1  PF00072.19 Response regulator receiver domain
    4.6e-15   55.2   0.2    1.2e-14   53.8   0.2    1.8  1  PF00512.20 His Kinase A (phospho-acceptor) domain
      2e-10   40.8   0.0    9.1e-10   38.7   0.0    2.2  2  PF01590.21 GAF domain
     0.0037   16.3   0.0     0.0097   14.9   0.0    1.7  1  PF00360.15 Phytochrome region


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   1.1e-23   3.1e-20       2     110 ..     957    1118 ..     956    1119 .. 0.94

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 1.1e-23
                  HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEC................................................TCEEEEEEE-----THHHHHHHCSTTTCCSC.SSGGGTT----THHHHHHCCEEEEEEEEECTC....T-CEEEEEEEEC CS
  PF02518.21    2 dedrlrqivselvdNavkateesgeievrvkree................................................gelvieVeDnGiGipeedlervfepffqtdd.dsrkvggtGlGlsivkklvellggeieveske....ggGttvtlrlpl 110 
                  d  r+rq++ +l++Na+k+++++  ++v+++  +                                                 +l  +V+D+GiGi+++ ++++f +f q+dd ++++++gtGlGl+i++ l+ llgg+i++ s +    g  +++++ +p+
  MMETSP0890-20130614|5884_1  957 DGGRIRQVLVNLISNAIKFSKPNSPVTVKISLHSangrrlidsdiereylknanshrpladifqeidqaiennvqlspnkssLWLLATVKDRGIGISQAGMPKLFRRFSQVDDsKTKQYQGTGLGLAICEHLIHLLGGRIWCFSTDknddGSKSCFQFIIPV 1118
                  66799******************7777777777777**********************************************************************************************************99999988888888888875 PP

>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.2   9.1e-19   2.5e-15       1     110 [.    1413    1525 ..    1413    1527 .. 0.95

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 9.1e-19
                  EEEESSSHHHHHHHHHHHH.HTTSEEEEEESSSHHHHHHHHHHH..ESEEEEESS-TT----HHHHHHHHHT..TTSEEEEEES-TTHHHHHHHHHTT-SEEEESS--HHHHHHH CS
  PF00072.19    1 vlivdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireee..pklpiivvtahgeeedalealkaGakdflsKpfdpeelvka 110 
                  +l+vdD +++r +++++++ k+gy ++  a+dg +a++ +k+    +  i+lD+ mp mdG+e++++ir+ +  ++lp i+vta   ++  +e +k+  + ++ Kp+ +++++++
  MMETSP0890-20130614|5884_1 1413 ILCVDDIENNRAVMAVMMQhKKGY-HCMLAEDGLAAVNAWKQFGtrIKAIILDWHMPIMDGIEAARQIRALPhgKDLPLILVTADI-MPRNEEDMKYLFNHVVIKPVTRSKILHM 1525
                  89*****************99***.***************999889************************999999*******888.6999999**************9999876 PP

>> PF00512.20  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.2   4.5e-18   1.2e-14       3      67 ..     839     902 ..     837     903 .. 0.95

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 4.5e-18
  PF00512.20   3 grflagvsHELrtPLtailgnaellervgelteeelrealeiirdeaerlraliedlLdlsriea 67 
                 + fla++sHELrtP +++ g++++l++++ l+ee  +++l+ + ++ae ++ l++d+L++s++e+
  MMETSP0890-20130614|5884_1 839 RNFLANMSHELRTPFNGVVGMLSVLLEDETLPEES-MRMLRVVNRSAECMLLLLDDILTISKLEN 902
                 78*************************89999999.**************************996 PP

>> PF01590.21  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   3.3e-13   9.1e-10       3     154 .]     335     508 ..     333     508 .. 0.83
   2 ?   -2.7   0.0       1.9   5.1e+03     128     149 ..     795     814 ..     792     818 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 3.3e-13
                 HHHHHHHHHHHHHHCTECEEEEEEEETTTEEEEEEEEEEGHHS........................HHHHHEECHCCCCCEECCTCTSTEEESSCGGSTTTECHHCTHHCTB--THHHHHHHHH-T-SEEEEEE-BETTEBEEEEEEEESS-.----HHHHHHHHHHHHHHHHHH CS
  PF01590.21   3 eelldtilrelrellgadrcavalpdldglelylvlgyplsdi........................pqaelslppaggiageviatgrpvvipdvqddprfqdqtlagselrapsgchehymrrlgvrsllavPllargkliGvlvlhnkspgrpftdddlellealaaqaaval 154
                  e+++ ++r++  ++g +r++++  d++g+e  ++ g   ++                         p ++++l+   ++   v  + +p++   v++ +  +   l++++lr  s+ h  y++++gvr++++  ++ +++l+G++++h+++  +p + +    l  ++++ ++a+
  MMETSP0890-20130614|5884_1 335 NEVFEHTARIVLYMTGFERVMIYNFDARGEEY-DGYGEVVAEAiappeigkeaatsylgmkfpaadvPRQARQLYKRTQVRSIVDIESKPIP-LIVSKNHHGNAVDLSDTRLRYTSPIHLVYLKNMGVRASASSSIIIGNRLVGLIACHDTRGAHPISTSVWKWLSLIGSHTSMAI 508
                 68999*****************6666666665.3333333333466666666666666666666666*************************.88888888999999999*************************99999*************99999988888888888887776 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.9
                 ESS-.----HHHHHHHHHHHHH CS
  PF01590.21 128 nkspgrpftdddlellealaaq 149
                 n sp  +++++d+e+++ l++ 
  MMETSP0890-20130614|5884_1 795 NYSP--AWSFEDREIVRYLGSW 814
                 4556..9*******99877765 PP

>> PF00360.15  Phytochrome region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.6e-06    0.0097     135     176 ..     776     817 ..     767     821 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.6e-06
                 ---EEEE-S----EEEEE-S------HHHHHHHHHHHHHHHH CS
  PF00360.15 135 egsrlsPRkSFeawkevvkgrSlpWeeveleaaesLrlalle 176
                  ++ l PR+SFe +++v+ + S  W+  + e+++ L + l++
  MMETSP0890-20130614|5884_1 776 VSNSLLPRRSFEEFNQVHGNYSPAWSFEDREIVRYLGSWLVQ 817
                 46899*****************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1528 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.93u 0.41s 00:00:02.34 Elapsed: 00:00:01.46
# Mc/sec: 2507.97
//
Query:       MMETSP0890-20130614|5889_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.22   11.6   0.0    1.3  1  PF13721.1 SecD export protein N-terminal TM region


Domain annotation for each model (and alignments):
>> PF13721.1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.6e-05      0.22      18      89 ..     200     277 ..     198     281 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.6e-05
   PF13721.1  18 igllyalPnl.ygedpavqisaakrgvkvdeq.k...qveeaLkeagievksielenesllvrlks.teeqlkAkdvl 89 
                 i+ lya P l +g   a+ +s  +++++  ++ +   +    L+ ++i+++si+l+++++ + +++ ++ +l  kd++
  MMETSP0890-20130614|5889_1 200 ISGLYAGPRLiFGPFFALTVSDLRTKISQPHKcHldpNTALYLDGSNIKIDSITLKGDAAAIIINTrNDASLLIKDLV 277
                 677999998549**********99999887763244688999***************999888765156666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.99
# Mc/sec: 820.57
//
Query:       MMETSP0890-20130614|5899_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-21   75.8   0.4    3.9e-21   75.1   0.3    1.3  1  PF06426.9  Serine acetyltransferase, N-terminal
      1e-10   40.4   5.3    6.6e-07   28.4   0.2    3.0  3  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF06426.9  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.3   5.8e-25   3.9e-21       1     105 []      42     145 ..      42     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 5.8e-25
                 HHHHHHHHHHHHHHH-TT---HHHHHTTT-SSHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH-TT--STHHHHHH----HHHHH CS
   PF06426.9   1 vWskiraeAeeaaekeplLasflyatilshkslesalafllanklasselsaealrelfeealaadpeiveaaraDlkavkerDpAcesyleplLyfKGFqAlqa 105
                 +Ws++++eA  ++ +ep+L++ +++til  +sl++a++ ++a+k++ +   + +  e +e + ++     e + aD+ a+++rDpA+ syl+++ +fKGF+A+qa
  MMETSP0890-20130614|5899_1  42 LWSRLQEEAMMLI-DEPMLGEWFESTILASSSLHEAISSIVARKMSREMADTRMRLESLEYLTSQILANDERIGADIIAIMSRDPAAMSYLQVVQFFKGFHAVQA 145
                 7********8766.69****************************999987777777777777777777778889******************************7 PP

>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   6.1e-06     0.041       3      23 ..     195     215 ..     193     216 .. 0.80
   2 !   28.4   0.2   9.7e-11   6.6e-07       1      34 [.     226     259 ..     226     260 .. 0.96
   3 ?   -1.6   0.0       0.3     2e+03      20      27 ..     268     275 ..     268     278 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.1e-06
                 EE-TTEEE-TTEEEESSEBE- CS
  PF00132.19   3 vIGenvlIgpnvvigggviIG 23 
                 vIGe +++g +++i+++v++G
  MMETSP0890-20130614|5899_1 195 VIGETAVVGRDCTILHNVTLG 215
                 788888888888888888887 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 9.7e-11
                 CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   1 gtvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                 ++++G+ v+Ig++++++g++ I ++v+Ig+++v+
  MMETSP0890-20130614|5899_1 226 HPKLGDRVTIGAGATLVGPIRIESDVVIGSQAVV 259
                 6899*****************************8 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.3
                 EBE-TTEE CS
  PF00132.19  20 viIGdnvi 27 
                 v++G+n+ 
  MMETSP0890-20130614|5899_1 268 VVVGRNSL 275
                 56666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1012.55
//
Query:       MMETSP0890-20130614|5900_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-09   35.0   3.6    4.5e-07   28.8   0.3    3.1  3  PF02163.17 Peptidase family M50


Domain annotation for each model (and alignments):
>> PF02163.17  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0015        21       4      26 ..     298     320 ..     294     330 .. 0.83
   2 !   28.8   0.3   3.3e-11   4.5e-07      78     180 ..     344     487 ..     337     493 .. 0.89
   3 ?    1.1   0.1     0.011   1.5e+02     101     145 ..     497     544 ..     493     545 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
  PF02163.17   4 lalgilvlvHElgHllvAkrvgv 26 
                   +++  l+HE +H ++Ak++++
  MMETSP0890-20130614|5900_1 298 TLIVTNTLLHEGAHIFIAKKYNF 320
                 45666778***********9876 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 3.3e-11
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-.............................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02163.17  78 qfkskspwkrililaAGplaNfllavllfalllllggrvk.............................................asvglsellaflallslnlgilNllPipvLDGgkillslleavrrrplneeveeiillvglal 180
                 q + ks+ + ++i++AGp +++l+++l++++ ++    ++                                                 +++ +++++l s ++  l l+Pi   DG++ l +l+    +r+    v +i++ v+++ 
  MMETSP0890-20130614|5900_1 344 QAFPKSRSDLMAISLAGPSIGLLFSLLCLFAGAFCFEPPHlnaaidadlflphipaaairsstiasiilalanpqlatsvvneatNAQLIVSPIFVAGLASSIINALQLIPIGRTDGSRALGALI----GRNAAVAVTAIVTTVVFFN 487
                 6678999****************************99998*******************************************9988899999*****************************999....6666666666666555554 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.011
                 XXXXXXXXXXXXXXXX-...XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02163.17 101 lavllfalllllggrvk...asvglsellaflallslnlgilNllPip 145
                 la ll+al +++   ++     +  ++ la l+ + ++++++ llP+p
  MMETSP0890-20130614|5900_1 497 LAHLLIALTFYARTDPPcrdEATEPEAGLANLYAIAVSVAVFVLLPCP 544
                 5555555555555555444344556677888999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:01.32
# Mc/sec: 1025.71
//
Query:       MMETSP0890-20130614|5907_1  [L=996]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-59  199.6   0.1    6.3e-59  199.1   0.1    1.2  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase
    7.7e-35  118.8   0.3    2.1e-28   98.2   0.0    2.6  2  PF08771.6  Rapamycin binding domain
    6.5e-16   57.3   0.1    1.4e-15   56.2   0.1    1.6  1  PF02260.15 FATC domain
  ------ inclusion threshold ------
       0.41    8.9  33.6     0.0057   15.0  16.9    2.1  2  PF03344.10 Daxx Family


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.1   0.1   1.8e-62   6.3e-59       2     234 ..     453     702 ..     452     703 .. 0.96

  Alignments for each domain:
  == domain 1    score: 199.1 bits;  conditional E-value: 1.8e-62
                 EEEEE-----HHHHHHHHHHHHHHHHHHHCTT----.....-----B--SSS----EE--TTEEEHHHHHCH--------T....................................THHHHHHHHHSSSHHHHHHHHHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------..----SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCCCCS--CCCC CS
  PF00454.22   2 safifkggadlrqdervlqlvrlfnkllsgegalre.....laaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvkl...............felqkkkkpkvgslqlFlkeypdaeeflearsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp..skheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdlltrlLqafveigllkwr 234
                 + f++kg++dlrqder +ql++l n ll  ++ + e     ++ Y v pl+ ++g++ +v+s++tl+ + r +   +++   n++++ + +                f+   +  p +++ ++++ ++   e++le r++++rsla +s++++ilg+gDRh++N+++d+ tgk+ hIDfG c++  + +e+ pe+vpfrltr+++++m    + s+ eg+fr +ce+++++lr + d l+++L+af++++l++wr
  MMETSP0890-20130614|5907_1 453 YGFLLKGHEDLRQDERAMQLFGLANALLARDRRTCEhghlfIQRYAVTPLSHNCGVVGWVPSCDTLHALVRDFREARKIVL-NIEHRTMLQHapdydaltlaqkievFDAALADAPGQDLMKVLWLKSAHSEQWLERRTHYTRSLATMSMVGHILGLGDRHPSNLMLDRRTGKILHIDFGDCFEvaQLREKMPERVPFRLTRMLVNAM----EVSGVEGTFRATCEKVMRVLRDNRDSLLSMLEAFIHDPLISWR 702
                 89***********************************************************************86666555.77777776667********************************************************************************************99*********************....******************************************8 PP

>> PF08771.6  Rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   6.2e-32   2.1e-28       1      79 [.     237     315 ..     237     323 .. 0.96
   2 !   18.1   0.1   5.5e-07    0.0019      76     100 .]     361     385 ..     345     385 .. 0.80

  Alignments for each domain:
  == domain 1    score: 98.2 bits;  conditional E-value: 6.2e-32
   PF08771.6   1 ELiRvailwhElWyealeeasrayfkeknvekmleileplheelekepeTlkEisFvqqfgseLkeAkellqkykstkd 79 
                 ELiRvailwhE+W+e+leeasr+yf++ +v++m++il+plh+el+++p+Tl+E++F+++fg++L+eA e+l+ky++  +
  MMETSP0890-20130614|5907_1 237 ELIRVAILWHEKWHEGLEEASRLYFGDGDVDGMMAILRPLHAELDEGPHTLREAAFQTAFGRDLTEASECLDKYEHAAE 315
                 9*************************************************************************98765 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5.5e-07
   PF08771.6  76 stkdeeelnqAwdlyysvfkkiekq 100
                 +++  + lnqAwdlyy+vf++i+kq
  MMETSP0890-20130614|5907_1 361 QNQADAALNQAWDLYYTVFRRINKQ 385
                 4555788****************98 PP

>> PF02260.15  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   4.1e-19   1.4e-15       3      33 .]     966     996 .]     964     996 .] 0.98

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 4.1e-19
  PF02260.15   3 LsveqQVdrLIseAtspeNLaqmYiGWcPfw 33 
                 Lsve QVdrLI +At++ NL+q+++GWcPfw
  MMETSP0890-20130614|5907_1 966 LSVEDQVDRLILQATDVGNLCQAFVGWCPFW 996
                 8****************************** PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.2      0.18   6.2e+02     438     471 ..      84     115 ..      73     142 .. 0.46
   2 ?   15.0  16.9   1.7e-06    0.0057     370     618 ..     676     923 ..     672     936 .. 0.57

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.18
  PF03344.10 438 eseeeekaekeedeeddekeeedkseeeeeeeee 471
                 +++++e++ +++d ++d+  ee +se++   ++e
  MMETSP0890-20130614|5907_1  84 DCDHDENVCDDNDTQNDDYTEERTSEQQG--VDE 115
                 44444444433333333222222221111..111 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.7e-06
  PF03344.10 370 aRkLRsnRevAvsrLeevisk....YAnkqddtEeeErrkrqerkrrgkesrskdkslassestesPllasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedeekndevakgirvseeqqkr.essvqpespkeepqepeavdaekegeesdeellaeeeplsshtelesvatveerdisskrklspepvstsleedsavvisetengnvsastpqeeq 618
                 +R LR+nR+  +s Le  i      +      t+ +E    q     + e++ +  ++a+  s ++P+++ +e  +ee+ e+e+  e++e++ e++  e+ee +++e+  ++ +n+ +ed+ +sse++++  +ee d++ + + ++g   +  +    e +  +   +  ++e+e++ +  +  +s +    + +  s h ++++ a +    + s+r  + +    +  ++ + v++ + n+++ +++ +e+q
  MMETSP0890-20130614|5907_1 676 MRVLRDNRDSLLSMLEAFIHDplisWRLLGATTNPDETVDDQPGAATSFEAE-AAAATAANVSYKAPQISEHEVLQEEEEEEEDISEEEEDD-EEEISEDEEGNNNEHGSQKPQNDDDEDVVSSSEEDEEISDEESDQS-HPSHSEGSDEEGSDYGSyEANSGETGDSGRANESESTSVAAV-SSSRRLRAPSHSRASLHHKMSKLAAS--LSLNSTRYSAHSVHDGVRTNNIGSVVGSIANSRLDHRSARERQ 923
                 6888888888888888888752222555566666666666555554444444.555666667778887777777766666644444444444.4444445555666666777777778887777776665555555444.556666664333333220222222222333333333333332.34445555677788889999999855..6666666655555555555555666777777777766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1040  (0.0760679); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.97u 0.43s 00:00:02.40 Elapsed: 00:00:01.51
# Mc/sec: 1580.64
//
Query:       MMETSP0890-20130614|5909_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-62  207.0  26.5    1.1e-15   56.7   0.2    6.1  6  PF00432.16 Prenyltransferase and squalene oxidase repeat
    7.3e-38  129.3   5.3    2.3e-18   66.5   0.2    3.7  4  PF13249.1  Prenyltransferase-like
    1.1e-13   50.9   0.2    1.3e-06   28.2   0.0    2.9  3  PF13243.1  Prenyltransferase-like
     0.0019   17.3   0.1       0.13   11.3   0.0    2.6  3  PF07678.9  A-macroglobulin complement component


Domain annotation for each model (and alignments):
>> PF00432.16  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.4    0.0073        25      31      44 .]      36      49 ..      35      49 .. 0.91
   2 !   45.0   0.1   1.5e-15   5.1e-12       2      44 .]      58     100 ..      57     100 .. 0.97
   3 !   56.7   0.2   3.2e-19   1.1e-15       1      44 []     105     148 ..     105     148 .. 0.98
   4 !   42.7   0.6   7.5e-15   2.6e-11       2      44 .]     154     196 ..     153     196 .. 0.96
   5 !   36.5   1.5   6.4e-13   2.2e-09       1      44 []     201     244 ..     201     244 .. 0.97
   6 !   36.7   0.0   5.9e-13     2e-09       1      43 [.     249     292 ..     249     293 .. 0.96

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0073
                CCHHHHHHHHHHHH CS
  PF00432.16 31 yytywalaaLallG 44
                ++ yw++++LallG
  MMETSP0890-20130614|5909_1 36 SGVYWGITSLALLG 49
                789**********8 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 1.5e-15
                 HHHHHHHHHHHHSH-----BS-TCCCCSCCCHHHHHHHHHHHH CS
  PF00432.16   2 dvekavdfLlscQnpdGGwggrpgsesdtyytywalaaLallG 44 
                 +v++++++++ cQ+++GG+gg+ ++++++ yt+ al++Lall+
  MMETSP0890-20130614|5909_1  58 NVDALIEWVIQCQHDSGGFGGSEDQDAHMLYTLSALQILALLD 100
                 7899*************************************96 PP

  == domain 3    score: 56.7 bits;  conditional E-value: 3.2e-19
                 HHHHHHHHHHHHHSH-----BS-TCCCCSCCCHHHHHHHHHHHH CS
  PF00432.16   1 idvekavdfLlscQnpdGGwggrpgsesdtyytywalaaLallG 44 
                 id eka++++ s Q++dG+++g+ ++e dt+++y+al+aLallG
  MMETSP0890-20130614|5909_1 105 IDTEKAAQYIASLQQADGSFAGDEWGEIDTRFSYCALSALALLG 148
                 699****************************************8 PP

  == domain 4    score: 42.7 bits;  conditional E-value: 7.5e-15
                 HHHHHHHHHHHHSH-----BS-TCCCCSCCCHHHHHHHHHHHH CS
  PF00432.16   2 dvekavdfLlscQnpdGGwggrpgsesdtyytywalaaLallG 44 
                 dv  a+df+ +c n dGG+g  pg es++++ +++++aL+++G
  MMETSP0890-20130614|5909_1 154 DVSLAADFVCKCKNFDGGYGAIPGAESHAGQIFCCVGALCIAG 196
                 67889************************************98 PP

  == domain 5    score: 36.5 bits;  conditional E-value: 6.4e-13
                 HHHHHHHHHHHHHSH-----BS-TCCCCSCCCHHHHHHHHHHHH CS
  PF00432.16   1 idvekavdfLlscQnpdGGwggrpgsesdtyytywalaaLallG 44 
                 id++ + ++L  +Q++ GG++grp++ sd++y++w l+++++lG
  MMETSP0890-20130614|5909_1 201 IDRDLLGWWLAERQCDGGGLNGRPEKQSDVCYSWWILSSMCMLG 244
                 6999**************************************98 PP

  == domain 6    score: 36.7 bits;  conditional E-value: 5.9e-13
                 HHHHHHHHHHHHHSH.-----BS-TCCCCSCCCHHHHHHHHHHH CS
  PF00432.16   1 idvekavdfLlscQn.pdGGwggrpgsesdtyytywalaaLall 43 
                 id ++++ f+l+cQ+ ++GG ++rpg  +d+++t++++++L+ll
  MMETSP0890-20130614|5909_1 249 IDTDALATFILRCQDdDNGGIADRPGNVADVFHTFFGIGGLSLL 292
                 68899*************************************97 PP

>> PF13249.1  Prenyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   0.00047      48     112 ..      12      77 ..       2      78 .. 0.81
   2 !   66.5   0.2   6.8e-22   2.3e-18       1     112 [.      63     173 ..      63     174 .. 0.92
   3 !   35.1   0.0   3.8e-12   1.3e-08      11     111 ..     169     269 ..     169     271 .. 0.89
   4 !   29.3   0.0   2.4e-10   8.2e-07       3      86 ..     209     293 ..     207     305 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
   PF13249.1  48 ldwllsqqnedGgfgssgagneadlsttaaalallellggtkd..keavekavdyllstQnpdGgwr 112
                 ++++++  ++  ++ +  +++  ++s ++++++ l+llg++     ++v+  +++++++Q++ Gg++
  MMETSP0890-20130614|5909_1  12 VNYIRQVSEDTESLEYALTEYM-RMSGVYWGITSLALLGRDISkeLNNVDALIEWVIQCQHDSGGFG 77 
                 6777777776777777666655.69***************987777788889**************8 PP

  == domain 2    score: 66.5 bits;  conditional E-value: 6.8e-22
   PF13249.1   1 lewLlsqQnpdGgwgaa.gqesdvasTalallaLaalgete..drdkvegldwllsqqnedGgfgssgagneadlsttaaalallellggtkdkeavekavdyllstQnpdGgwr 112
                 +ew++++Q++ Gg+g++ +q+++   T  al+ La l   +  d +k+  ++++ s+q+ dG+f+++++g   d++ +++al +l+llg+ +    v  a+d+++++ n dGg++
  MMETSP0890-20130614|5909_1  63 IEWVIQCQHDSGGFGGSeDQDAHMLYTLSALQILALLDALDriDTEKA--AQYIASLQQADGSFAGDEWGE-IDTRFSYCALSALALLGKLHL-VDVSLAADFVCKCKNFDGGYG 173
                 69***************999************9998888884458888..****************98775.68*****************96.99999**************97 PP

  == domain 3    score: 35.1 bits;  conditional E-value: 3.8e-12
   PF13249.1  11 dGgwgaa.gqesdvasTalallaLaalgeted..rdkvegldwllsqqnedGgfgssgagneadlsttaaalallellggtkdkeavekavdyllstQnp.dGgw 111
                 dGg+ga  g es++   ++++ aL+++g+ +d  rd     +wl ++q + Gg++++++++ +d+ ++++ l  + +lg t+    ++  + ++l++Q + +Gg+
  MMETSP0890-20130614|5909_1 169 DGGYGAIpGAESHAGQIFCCVGALCIAGRANDidRDLL--GWWLAERQCDGGGLNGRPEKQ-SDVCYSWWILSSMCMLGCTHW-IDTDALATFILRCQDDdNGGI 269
                 8******9***********************8546666..9999999997888****9765.68******************8.888889********8768987 PP

  == domain 4    score: 29.3 bits;  conditional E-value: 2.4e-10
   PF13249.1   3 wLlsqQnpdGgwgaa.gqesdvasTalallaLaalgete..drdkvegldwllsqqn.edGgfgssgagneadlsttaaalallellg 86 
                 wL+++Q + Gg ++  +++sdv  + + l ++++lg t+  d d+   + ++l++q+ ++Gg+++++ gn ad+ +t+ ++ +l+ll+
  MMETSP0890-20130614|5909_1 209 WLAERQCDGGGLNGRpEKQSDVCYSWWILSSMCMLGCTHwiDTDAL--ATFILRCQDdDNGGIADRP-GNVADVFHTFFGIGGLSLLR 293
                 9*************9999*********************9889999..*********7788899988.99**************9985 PP

>> PF13243.1  Prenyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.7e-07   0.00059      26      85 ..      35      98 ..      12     108 .. 0.73
   2 !   28.2   0.0   3.8e-10   1.3e-06       2      86 ..     108     195 ..     107     205 .. 0.77
   3 ?   -1.4   0.0      0.59     2e+03      54      81 ..     209     237 ..     208     266 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.7e-07
   PF13243.1 26 vsvtaallralaaagda..avdeaikkavdwlldqqqedGgfgydgaeeay..stataiallll 85
                +s++++ ++ la++g +  +    ++  ++w++++q+++Ggfg++++++a    t +a+++l+l
  MMETSP0890-20130614|5909_1 35 MSGVYWGITSLALLGRDisKELNNVDALIEWVIQCQHDSGGFGGSEDQDAHmlYTLSALQILAL 98
                5677788877777776655888999999*****************6666551155666665533 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 3.8e-10
   PF13243.1   2 eraveyilntQnedGsWk.ynsgd.dvsvtaallralaaagdaavdeaikkavdwlldqqqedGgfgyd.gaeeaystata.ialllly 86 
                 e+a++yi++ Q++dGs+  +++g+ d+   +++l ala++g+  +   +  a+d++ ++++ dGg+g+  gae+ + ++ + + +l+++
  MMETSP0890-20130614|5909_1 108 EKAAQYIASLQQADGSFAgDEWGEiDTRFSYCALSALALLGK-LHLVDVSLAADFVCKCKNFDGGYGAIpGAESHAGQIFCcVGALCIA 195
                 799**************626699746999999999**99999.77888999****************9864444333332225555555 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.59
   PF13243.1  54 wlldqqqedGgfgyd.gaeeaystataia 81 
                 wl + q + Gg+ ++ ++++  +++ +i 
  MMETSP0890-20130614|5909_1 209 WLAERQCDGGGLNGRpEKQSDVCYSWWIL 237
                 77777777777777754444445554433 PP

>> PF07678.9  A-macroglobulin complement component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   3.7e-05      0.13     187     234 ..      35      82 ..       7      98 .. 0.72
   2 ?    3.2   0.0     0.011        38      46      70 ..     102     126 ..      88     134 .. 0.74
   3 ?   -2.3   0.0      0.55   1.9e+03     199     228 ..     140     172 ..     131     174 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
   PF07678.9 187 aaslevettaYaLLallkledleyaekivrWLtsqrnsgGGFsStqdt 234
                 ++ +   +t+ aLL     ++l+ ++  ++W+++ ++  GGF  + d 
  MMETSP0890-20130614|5909_1  35 MSGVYWGITSLALLGRDISKELNNVDALIEWVIQCQHDSGGFGGSEDQ 82 
                 45555567888888877779**********************988664 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.011
   PF07678.9  46 idekkiakslewLlkkqkedGsFee 70 
                 +d+ + +k+ +++ + q++dGsF  
  MMETSP0890-20130614|5909_1 102 LDRIDTEKAAQYIASLQQADGSFAG 126
                 4555667888888888888888865 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.55
   PF07678.9 199 LLallkl...edleyaekivrWLtsqrnsgGGF 228
                  L++l+l    +l  ++ ++ ++ + +n +GG+
  MMETSP0890-20130614|5909_1 140 ALSALALlgkLHLVDVSLAADFVCKCKNFDGGY 172
                 444444442245555778889999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.67
# Mc/sec: 1301.90
//
Query:       MMETSP0890-20130614|5911_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-14   51.9   0.0    1.3e-12   46.9   0.0    2.1  2  PF05935.6 Arylsulfotransferase (ASST)
    4.4e-05   22.6   0.3      0.011   14.8   0.3    2.7  2  PF14269.1 Arylsulfotransferase (ASST)


Domain annotation for each model (and alignments):
>> PF05935.6  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.9e-16   1.3e-12     235     362 ..       8     167 ..       5     181 .. 0.74
   2 !    2.9   0.0    0.0042        28     394     433 ..     231     271 ..     228     300 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1.9e-16
   PF05935.6 235 vvkvwdlkkiL....dpyrdallk............dl.............................kepfgdiagvgggrdWlHiNsveydekddsiivSsRhqsavvkidyrtkkvkWilgdkegWskelqkklLtpvdeegdfdwtwgqHtavlipng.t.iielmvFDNgd 362
                 +++ w+ +++L    dp+                  dl                               + + + g+ g+rdWlH+Ns++yde +  i++S   +s v+ i +rt+++ + +g++  ++         p       ++   qH+a +++++ t  +++++F+Ng 
  MMETSP0890-20130614|5911_1   8 ETWRWRQFDHLvqdaDPR-----IaetfgnvrtrwrDLdfnftppggkarqrnsipphtpphptgfaRFDTNWKLGKTGERDWLHVNSISYDEDRALILLSYNVTSEVFIISRRTDQLVFRFGNPAVYRAG------DP----HADRVLFSQHSAIFVSSNeTsNVRFLCFNNGC 167
                 566777777772222222.....12333344444331144555555555555556666666666654444555667889**************************************************99......67....77788889*********9769*********95 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0042
   PF05935.6 394 eqvweygkerGa..efYSsivssveylsdkgnilvdsglagl 433
                 + vw+ g + G    fYS   s v+ +s+ gn+l++ g  g+
  MMETSP0890-20130614|5911_1 231 QLVWSHGPKAGHygSFYSTHSSGVDRCSN-GNTLITLGPQGI 271
                 7899999999874479*************.*****9987665 PP

>> PF14269.1  Arylsulfotransferase (ASST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   1.6e-06     0.011     138     243 ..      80     195 ..      42     226 .. 0.70
   2 !    4.3   0.0    0.0024        16     262     297 ..     251     286 ..     240     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-06
   PF14269.1 138 skpedyfHlNsvekfedgdy.LiSlrelsslflirpkegkvlWqlqGpkggdfel....dnstfsrQHdariveet.edkivislfnN...entdt......nerepttglildvdlqnke 243
                 +  +d  H+Ns+ + ed  + L+S +  s +f+i+ ++++++ +   p  + ++      +     QH a +v+    +++++  fnN              +e + tt l+ +++ ++++
  MMETSP0890-20130614|5911_1  80 TGERDWLHVNSISYDEDRALiLLSYNVTSEVFIISRRTDQLVFRFGNP--AVYRAgdphADRVLFSQHSAIFVSSNeTSNVRFLCFNNgcmP---YrpwssvDEFQITTTLLESMNQDTSI 195
                 556899******99999776378*******************999877..55555544434445569***999777577888999***5541...33333335555566555555555443 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0024
   PF14269.1 262 qGsyqllpnghvlveegsigrveeydangkivlear 297
                 +  ++  +ng+ l++ g +g ++e + + + +++++
  MMETSP0890-20130614|5911_1 251 SSGVDRCSNGNTLITLGPQGIIFEITPDHQEAWRYI 286
                 44578899************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.75
# Mc/sec: 1233.33
//
Query:       MMETSP0890-20130614|5904_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-92  307.5   7.4    1.6e-91  306.8   5.1    1.3  1  PF11940.3  Domain of unknown function (DUF3458)
    6.4e-62  209.7   0.0    1.3e-61  208.7   0.0    1.5  1  PF01433.15 Peptidase family M1
    2.3e-15   56.6   0.0    5.4e-15   55.4   0.0    1.7  1  PF13485.1  Peptidase MA superfamily
     0.0056   15.5   0.0       0.01   14.6   0.0    1.3  1  PF00897.12 Orbivirus inner capsid protein VP7
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.046   13.5   0.0    1.7  1  PF05299.7  M61 glycyl aminopeptidase
      0.044   12.4   0.0      0.073   11.7   0.0    1.4  1  PF00496.17 Bacterial extracellular solute-binding proteins, family 5 Middle


Domain annotation for each model (and alignments):
>> PF11940.3  Domain of unknown function (DUF3458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.8   5.1     7e-95   1.6e-91      17     367 .]     468     828 ..     459     828 .. 0.89

  Alignments for each domain:
  == domain 1    score: 306.8 bits;  conditional E-value: 7e-95
                 SS-SS-----EEEEE-EE-T---EEEEEE..EEEE-SSEEEEEES---S--B--------SSSEEE-..---HHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHCTSS----HHHHHHHHHHHT-TTS----HHHHTS---HHHHGGG-TTB-HHHHHHHHHHHHHH----SHHHHHHHHHHT......HT--TTT......--HHHHHHHHHHHHHHHHHHHTT-TTHHHHHHHHTT-S.-HHHHHHHHHHGGGS............TTHHHHHHHHHHHHT..TSHHHHHHHHHHHHT---TTHHHHHHHHHHHTTTT---HHHHHHHHHHHH.T-HHHHT-------HHHHHHHHHHHTT-HHHHHHHG CS
   PF11940.3  17 pgqkekqplhIPvavgLldedGkelplqlervlelteaeqtftfegvaekPvpSllrgFSAPVkley..dlsdeellfLlahdsDpfnRweagqqLakrallalvaekqageeleldealiealkalledesldpalkallLtlPseaelaeqlkevdpdaihaarealrkalaealedellalyeal......aeeeays......pdaeaagkRaLknlaLsylaaaddeeaaelakeqyeeadnmTdrlaALsalvkse..........apereealadfyerwk..ddalvlDkWfalqasspredalervkallehpaFdlknPNrvRaligaFaaanpaafhaadGsGYrfladqilkldklNpqvAaRll 367
                 + ++ + pl+IP+a + +++ G++     e+v+el++aeqtf++   + ++vpSllrgFSAP+kl +  +l+ e+  +L+a+d+Dpf++w+a qqL ++++++++++ +++ + el++ li+a+ka+l+d++++ +l+a +L+lP+ ++la  +++ dp ++ +a +  rk+la+a ++el+a+y +l      +            ++ eaag+R+L+n++L+y+a++d     + + +++++a++mTd++aA s+l+  +           +e+++ +++fy++ k   d lv++kWf++qa+++ ++al++v++l++hp+F+ +nPNr+R+li +Fa anp +fh+a G  Y+f+++qi+++d++Np vAaRl+
  MMETSP0890-20130614|5904_1 468 QSNDGQPPLVIPIAAATVSSAGTS----SEQVFELNQAEQTFELATDDPEAVPSLLRGFSAPIKLIFepPLTVEQISILAAYDTDPFCKWDAWQQLSTKVIIDRYNAPADKMP-ELPSYLIDAFKATLADTEAETRLRAYALALPAYSTLALPIDDLDPSKLCNALDMTRKQLAQASSKELEAVYVSLasaataD-----AvatdtmYSVEAAGARSLRNACLNYMATLDA----RPVLAHFDAATCMTDKIAAASLLAGLDpskenmqhvdPKEKDDRIHAFYQTAKanRDDLVINKWFSIQAMANVDSALQNVRDLMNHPDFSAENPNRFRSLINTFAGANPNQFHNALG--YEFITEQIIAVDQINPLVAARLA 828
                 3344568***************77....479*********************************98844799***********************************997755.9***********************************************************************886554331.....123445599********************99....689*****************99987743333333332467888******976622689********************************************************876..*********************96 PP

>> PF01433.15  Peptidase family M1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.0   5.6e-65   1.3e-61      25     390 .]      38     386 ..      21     386 .. 0.89

  Alignments for each domain:
  == domain 1    score: 208.7 bits;  conditional E-value: 5.6e-65
                 E-EEEEEEEE-----EEEEB-SSEEEEEEEE---B--.......EEE----STEEEE-TTSSSE...EEEEEEEEE.....-TT-SSEEEE-C-----.-EEEE--TTTTGGGTS-B--STT--EEEEEEEE-SS....--B----B-------..TTEEEEEEEEEE-GGG---EE---EEEE-----........EEEE-HHHHHHHHHHHHTTHHHHHHHHHHHS---------EEE--T--------TTS.EEE-GGG--S........SSTSTTTHHHHHHHTT----EEESSGGGGGGT---HHHHHHHH------..HHHHHHH---HHH..HHHHHTSSSHHHHT---GSSS-GGGG-SSHHHH-- CS
  PF01433.15  25 eGsvtielkvkeatneivlhskeleitsvklrgeseseekateefeleeeqellvielaeklqaeksytLeieyegeladnmegiyrsqylektngekkevatTqfeptdaRkafPcfDePsvKatfeitikapkel..talsnmpeeesekledgrkiteFektpkmstYLlafavgdlesletktks....gvlvrvyarpgakeagqyalevtkkllefleeyfgipYplpkldlvalpdFsaGAmENwGlityreaaLLydpeestesdkqsvaeviaHElaHqWfGnlVTmkwWddlwLnEGfasyleylitdelep..ewrieeqfvleevqsalasDaldsshpisqevnkpseiselFdaisYeKG 390
                 ++ v+ +l+v++ t  ++l+ ++l +ts++++g s +       +++ +++  l+i ++ +   + +  +ei+ ++  +++++g+y           +  +++Tq+e++  R++++ +D+P++ ++++++++a++++  + lsn++e+e+ +  ++r++  Fe++ k + YL+a++ gdl ++e++ ++     v++ v+++  + +a ++a+   k+ + + e  +g +Y+l+ + +va+ +F++GAmEN Gl ++++a++L+ ++++t+ d ++v  viaHE++H+W Gn VT++ W +l L+EG++++ ++++++e  +    rie++ +++ +  ++++Da+  +hpi+   ++  + +++++ ++Y+KG
  MMETSP0890-20130614|5904_1  38 KAIVKSKLTVTQGTGPLILDGEDLVLTSIQINGISPE-------YDVGKDT--LTILAPPPAPFTLETVVEIDPKA--NTQLSGLY----------VSDGILCTQCEAEGFRRITYFLDRPDIMCKYRVRVEADSKKypVLLSNGNEIENGDAGNDRHYRIFEDPFKKPCYLFALVAGDLGHIEDTFTTcsgrSVKLAVWSEHHNVKALDWAMFSLKESMRWDEIAYGREYDLDVYHVVAVSSFNMGAMENKGLNVFNTACVLATKDTATDGDFERVLGVIAHEYFHNWSGNRVTCRDWFQLTLKEGLTVFRDQHFSEEKTSaaAKRIEDVRIMRSA--QFSQDASPLKHPIR--PESVIKQDNFYTVTVYNKG 386
                 4667788899999999999999999999999999988.......7777666..55555555444433577777666..78899999..........346799********************************9988999******************************************6665555577899*************************************************************************************************************************99999788889999999988..**************..666788899*********9 PP

>> PF13485.1  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   2.4e-18   5.4e-15      16     128 .]     284     409 ..     261     409 .. 0.73

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 2.4e-18
   PF13485.1  16 evtpgdrdwlrrvlaHEltHlvlgalvggngrlplWldEGlAeyve............grleaerlaalrdaleagrlppleelsssfsa...ssengslaYakgallvrylaerygeeklrallral 128
                  +t+gd +++ +v+aHE++H++ g++v+++++++l l EGl+++ +             r+e+ r ++  +a  ++++ pl++  +++s    ++ ++ ++Y+kga ++r+ ++  g e++r +++ +
  MMETSP0890-20130614|5904_1 284 TATDGDFERVLGVIAHEYFHNWSGNRVTCRDWFQLTLKEGLTVFRDqhfseektsaaaKRIEDVRIMR--SAQFSQDASPLKHPIRPESVikqDNFYTVTVYNKGAEIIRMYRTLLGIETFRTAMDLY 409
                 568899999*************************************6665544433333344444444..333333344444434445456557777778**********************999865 PP

>> PF00897.12  Orbivirus inner capsid protein VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.5e-06      0.01      70     110 ..      63     101 ..      50     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.5e-06
  PF00897.12  70 laalginvgnvspdYtqnlatlgiLArdeiPYtseaanrva 110
                 l  + i+++ +sp+Y+    tl+iLA +  P+t e+++++ 
  MMETSP0890-20130614|5904_1  63 L--TSIQINGISPEYDVGKDTLTILAPPPAPFTLETVVEID 101
                 4..5799******************************9985 PP

>> PF05299.7  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.046       3      29 ..     292     318 ..     290     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
   PF05299.7   3 tsldllaHEffHswnvkrirpadLetf 29 
                 + l+++aHE+fH+w ++r++  d  + 
  MMETSP0890-20130614|5904_1 292 RVLGVIAHEYFHNWSGNRVTCRDWFQL 318
                 56899*************998886655 PP

>> PF00496.17  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.2e-05     0.073      31     100 ..     413     486 ..     344     516 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.2e-05
                 ----B-SHHHHHHHHHHHHHGGGGGTTGGCHC....CCECCEEEEETTEEEEEESSETTTTSCHCCHHHHHHH. CS
  PF00496.17  31 sDGtpltAdDvvfslerladpdgasgaaslla....qdikeveavddytvrftlkepnalflplladvaaaiak 100
                 +DG+++t+dD+  ++  + ++d +    ++++    + ++e ++++d  + +++k+ n  ++pl+ ++aaa ++
  MMETSP0890-20130614|5904_1 413 HDGQAVTCDDFRQAMADASGKDLTQFEEWYKQagtpLVTVEHSKKNDGSIILKMKQSNDGQPPLVIPIAAATVS 486
                 9*************************9999999***99*********************999999999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:01.01
# Mc/sec: 2066.56
//
Query:       MMETSP0890-20130614|5914_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-43  147.8   2.5    1.2e-42  145.9   0.3    2.7  2  PF00481.16 Protein phosphatase 2C
    3.1e-06   26.8   0.1    0.00054   19.5   0.1    2.6  2  PF07228.7  Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.3   1.8e-46   1.2e-42       3     252 ..      34     321 ..      32     327 .. 0.83
   2 ?   -0.6   0.1     0.089   6.1e+02      30     103 ..     435     506 ..     419     507 .. 0.78

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 1.8e-46
                 -B--TCCCCCHHHHHHHHH----SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHH..HHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSE........EEEEEE---EEEEEE---EE...EESS---STTSHHHHHHHHH----EE-..T--EE---...........BSBSB----HHHC---....ST-TSB---EEE.................EEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHHHHHH CS
  PF00481.16   3 vgaselqgfrksmedahialknlekssgkssvaffavfdghggreaakyarehle..eilkerksfleleklekalrksfladtdeelksseantepsksGstavvalirgqk........lyvAnvGDSravLcrsdnak...keltedHkpsnedEreRIeeaggsvsn..gngRvngs...........LavsRalGdfelkpke....keqlvsaePdvt.................svkideedefliLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdeaiarg 252
                 + + e+qg+r   edah++ +      +++ +a f+v dghgg e+a++a+ +     +l+  k+ +++ +lek +  +f + td +l+ + +    ++sGst+vva ir+ +         y+An+GDSr +++r++n++      +edHkp+++dE +RI +agg+vs+     R+ g            LavsR lGdf +k+++    +eq vs+ P+++                  ++++   + liLa+DG++dv+s+++++  + + l +  ++ ++a  +v  +++  
  MMETSP0890-20130614|5914_1  34 GAVAEMQGWRADHEDAHFFRD------SENGFATFGVLDGHGGCEVARLAAHDRLpeALLDAGKTAKNGHELEKKIEAAFIQ-TDAWLRERPEV-TRDQSGSTCVVAGIRQADdtdqtnyeWYIANAGDSRGIIFRKNNTRpqlIIYSEDHKPDRQDEHARIAAAGGFVSDvdAARRLGGGlatvvarldgnLAVSRGLGDFAYKRDDhrqpSEQKVSCVPEIYrsnyhsttmkkddsdhsYHTLKTG-DILILACDGIFDVMSNEQLACAIATYLAQDVDLGDIASTIVSACLREL 321
                 67889*************999......6889******************998777567888888888888************.******96666.49**************9999**************************766667***********************9963333333366667777777**************99****666777777766666553322222222214444444.59****************998888888887899999999999998764 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.089
                 CCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS..HTT---E CS
  PF00481.16  30 gkssvaffavfdghggreaakyarehleeilkerksfleleklekalrksfladtdeelksseant.epsksGst 103
                 ++s ++f+++++   +r++ + ar+ l+ ++ke   +++    e++ rk f    d +l++++ +t +++ sG++
  MMETSP0890-20130614|5914_1 435 KRSYISFLEYCQADKSRKLPREARSLLRRVAKEEARKHSA-AREAIARKRFGV--DISLEDEKIHTtSDDGSGTS 506
                 5677889999999999999999999999988888888888.678888888877..77777766666688888885 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0033        23      56      95 ..     122     165 ..      74     173 .. 0.79
   2 !   19.5   0.1     8e-08   0.00054     114     192 ..     263     334 ..     248     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0033
                 ---.TT--EEE-E......EES----EEEEEE-----EEE-TTS-E CS
   PF07228.7  56 eeeerfatavlae......ydpstgkleyanaGhpppllvrpdggt 95 
                 ++ + + t+v+a        d  + + ++anaG++  +++r++  t
  MMETSP0890-20130614|5914_1 122 RD-QSGSTCVVAGirqaddTDQTNYEWYIANAGDSRGIIFRKNN-T 165
                 33.589999999988888889999999**************944.4 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 8e-08
                 ---EEE------EEEEE-----S--.HHHHHH....HHHHHT----------HHHHHHHHHHHHCT----S-EEEEEEE- CS
   PF07228.7 114 yeeaelqlepgdllllyTDGvtEar.dpdgelfgkerllallaeaegesleelldalveellelgsgeleDDitllvlrv 192
                  +    +l++gd+l+l+ DG+++ + +++       + +++la  +  +l ++++++v+++l+  + + +D +tl++++v
  MMETSP0890-20130614|5914_1 263 SDHSYHTLKTGDILILACDGIFDVMsNEQLAC----AIATYLA--QDVDLGDIASTIVSACLR--ELNSKDNMTLMIIQV 334
                 5666789*****************94444444....4445555..7778**************..5689********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.88
# Mc/sec: 1386.07
//
Query:       MMETSP0890-20130614|5918_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-22   77.4   0.2    7.2e-22   76.8   0.1    1.3  1  PF00312.17 Ribosomal protein S15


Domain annotation for each model (and alignments):
>> PF00312.17  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   5.2e-26   7.2e-22       8      83 .]     115     190 ..     108     190 .. 0.95

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 5.2e-26
  PF00312.17   8 seilkeekdtgsvevqvalLterivrLrkHleehkkDysskrgLiklvskrkrLlaYlkkkntakYeelieklglr 83 
                 +e   +e+d gs +vq+al+ +ri+++++H  e+ kD+ss+rgL++lvskr+rLl+Y+ +++ +  e+li+klg+r
  MMETSP0890-20130614|5918_1 115 QEYAVHENDVGSPPVQIALFSARIKHITEHVIENTKDHSSRRGLLALVSKRRRLLNYYYTQDPQGAEDLIQKLGIR 190
                 577889********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.55
# Mc/sec: 941.11
//
Query:       MMETSP0890-20130614|5921_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.78
# Mc/sec: 251.92
//
Query:       MMETSP0890-20130614|5924_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   17.3  16.5      0.002   17.3  11.4    6.1  5  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.3         1   1.4e+04      10      10 ..     156     156 ..     146     166 .. 0.48
   2 ?   -8.8  16.0         1   1.4e+04       6      32 ..     233     261 ..     226     272 .. 0.57
   3 !    3.3   6.5    0.0033        46       3      31 ..     288     314 ..     287     319 .. 0.59
   4 !   17.3  11.4   1.4e-07     0.002       2      35 ..     342     375 ..     335     376 .. 0.97
   5 ?   -1.9   1.7      0.14     2e+03      10      15 ..     380     385 ..     377     387 .. 0.53

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 1
   PF04886.7  10 P 10 
                 P
  MMETSP0890-20130614|5924_1 156 P 156
                 1 PP

  == domain 2    score: -8.8 bits;  conditional E-value: 1
   PF04886.7   6 Pte.qPTvqPTgqPtaq.PTdqPtaqPtd 32 
                 Pt+  PT+ PT  Pt + PT +Pt ++++
  MMETSP0890-20130614|5924_1 233 PTTfLPTTIPTKTPTTNyPTVAPTTSSPT 261
                 54423666666666433366666544332 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0033
   PF04886.7   3 TaqPteqP.TvqPTgqPtaqPTdqPtaqPt 31 
                 T+qP+  P T  PT     +PT+qP+ +Pt
  MMETSP0890-20130614|5924_1 288 TNQPSLLPkTSKPTT---LEPTSQPSLSPT 314
                 677766666666664...355555555555 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 1.4e-07
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pT  +te+PT  PT  Pt +PT  Pt  Pt+ Pt
  MMETSP0890-20130614|5924_1 342 PTYKATEEPTLDPTPRPTQEPTYMPTLVPTSTPT 375
                 8999****************************98 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 0.14
   PF04886.7  10 PTvqPT 15 
                 PT  PT
  MMETSP0890-20130614|5924_1 380 PTPKPT 385
                 555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.94
# Mc/sec: 1001.88
//
Query:       MMETSP0890-20130614|5923_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-24   85.6   0.2    3.4e-24   84.4   0.1    1.6  1  PF08498.5  Sterol methyltransferase C-terminal
    2.9e-14   52.7   0.0    4.3e-14   52.1   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
    6.6e-14   51.6   0.0    1.1e-13   50.9   0.0    1.3  1  PF13847.1  Methyltransferase domain
    6.5e-13   48.5   0.0    1.2e-12   47.6   0.0    1.4  1  PF13489.1  Methyltransferase domain
    2.2e-12   47.1   0.0    4.3e-12   46.2   0.0    1.5  1  PF08241.7  Methyltransferase domain
    3.6e-08   33.5   0.1    6.4e-08   32.7   0.0    1.4  1  PF13649.1  Methyltransferase domain
      5e-07   29.9   0.0    9.9e-07   29.0   0.0    1.5  1  PF08242.7  Methyltransferase domain
    8.9e-07   29.3   0.0    3.4e-06   27.5   0.0    1.9  2  PF12847.2  Methyltransferase domain
    0.00055   19.0   0.0     0.0011   18.0   0.0    1.4  1  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0028   17.5   0.0     0.0067   16.3   0.0    1.6  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.024   13.8   0.0       0.06   12.6   0.0    1.6  1  PF05175.9  Methyltransferase small domain
      0.044   13.5   0.0      0.079   12.7   0.0    1.3  1  PF03072.9  MG032/MG096/MG288 family 1
       0.11   11.9   0.1       0.18   11.2   0.1    1.3  1  PF09445.5  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> PF08498.5  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.1   3.2e-27   3.4e-24       2      65 ..     349     412 ..     348     412 .. 0.98

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 3.2e-27
   PF08498.5   2 ltifrttklGrlitrnlvkvlEkiglaPkGskkvtdaLekAaegLVaGgkkklFTPmflfvarK 65 
                 +++fr+t++Gr+ t+++v++lEk+++aPkG+ +v+++L+ +a  LV+Ggk ++FTP ++f+arK
  MMETSP0890-20130614|5923_1 349 ISGFRMTRIGRVCTHAMVTILEKLRIAPKGTTHVSAMLNATAIDLVEGGKAEIFTPSYFFLARK 412
                 789************************************************************9 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   4.1e-17   4.3e-14       7     216 ..     114     325 ..     107     348 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 4.1e-17
                 HHHHHHHHTS-HHHHCCCS-TT---S----SSTT--HHHHHHHHHHHHHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT---....--SEEEE---GGGT--TCHHHHHHHHHHCS-----EEEEEEE---HHHHCC----THHHHHHT--------H...HHHHHHHHH---EEEEEE CS
  PF02353.15   7 venikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevklldyedlde....kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelpsi...eeieeeiseagftvvdve 216
                 ++ + + YDl  df++    ++  ++  +    ++ Le+ ++a + +++ +l++kpG + Ld+GcG G+ +r+++   ++++ g+T+ + q ++ ++  ++++le+  + +  d+++l++    ++d    ++a+ h   +   + f+++ k lk++Gl++    + l  +   +++ k   i++ i  g  lp++   e++++   +agf+v+d+ 
  MMETSP0890-20130614|5923_1 114 ATMVTNFYDLVTDFYEYGWCQSFHFAPRWI--GETFLESIKRAEY-HLCSRLGMKPGIKALDVGCGVGGPMRNMAVFSGASIEGVTINEYQVRVGNKYHAQQGLEDICHTTQGDFQNLPQewtgQFDVAYEIEATCHSPDK--TQTFSQVAKCLKKGGLFAGYEWVVLPDRGYDANNSKHVAIKEGIEIGNGLPTLatpEDVQKALVDAGFEVLDAY 325
                 556777888888888877666666654433..3455677666665.6799************************9999****************************************9989999**99999999996544..345788999********998888777777777777778899999877777765222679999999999999875 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0     1e-16   1.1e-13       2     106 ..     165     268 ..     164     299 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 1e-16
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrl 106
                 k gik lD+GCG G   +++a  + +ga + G+ i+e ++ + ++  +++g+e  ++  qgd+++l++ +  +fD+    e+ ++++d+ +++ ++ ++lk+gg +
  MMETSP0890-20130614|5923_1 165 KPGIKALDVGCGVGGPMRNMA--VFSGASIEGVTINEYQVRVGNKYHAQQGLEdICHTTQGDFQNLPQEWTGQFDVAYEIEATCHSPDKTQTFSQVAKCLKKGGLF 268
                 6799*****************..9*********************9999****99************776699******************************987 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   1.2e-15   1.2e-12      14     161 ..     160     323 ..     147     324 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 1.2e-15
   PF13489.1  14 erllarlkpggrvLDiGcGtG.illellaengfdvtgvDpspaaigk...........akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthisff.............saeslkelleeaGfeive 161
                 +rl+   kpg + LD+GcG G ++  +   +g++++gv +++ ++             +++   + ++++ ++e  g+fd+ + +e ++h pd +++++q+a++lk+gG++   ++ +       + +  y+++++ h+                ++e+++++l +aGfe+++
  MMETSP0890-20130614|5923_1 160 SRLG--MKPGIKALDVGCGVGgPMRNMAVFSGASIEGVTINEYQVRVgnkyhaqqgleDICHTTQGDFQNLPQEWTGQFDVAYEIEATCHSPDKTQTFSQVAKCLKKGGLFAGYEWVV-------LPDRGYDANNSKHVAIKegieignglptlaTPEDVQKALVDAGFEVLD 323
                 5666..689999*********5555555667*********999888899999999999888888888888899999***************************************875.......444455555444443333333444444444***************986 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   4.1e-15   4.3e-12       1      93 [.     171     268 ..     171     270 .. 0.98

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 4.1e-15
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeelpfe.dnsfDvvvssevlehledpekalkeiaRvLkpgGll 93 
                 LdvGcG g  ++ +a  ++a++ gv ++e ++++ ++ ++++gle    + ++d+++lp e  ++fDv +  e+ +h +d  ++++++a++Lk+gGl+
  MMETSP0890-20130614|5923_1 171 LDVGCGVGGPMRNMAVFSGASIEGVTINEYQVRVGNKYHAQQGLEdichTTQGDFQNLPQEwTGQFDVAYEIEATCHSPDKTQTFSQVAKCLKKGGLF 268
                 8************************************************************999********************************98 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   6.1e-11   6.4e-08       1     101 []     170     266 ..     170     266 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 6.1e-11
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpfeeg.efdlvvcaglslehlspkqlealleeiarvlkpgG 101
                 +ld+GCG G   r ++  + +g  +++ gv i+e +++ ++++++++gl    +  q+d+++lp+e+  +fd+ +   +  +  + ++  + ++++a++lk+gG
  MMETSP0890-20130614|5923_1 170 ALDVGCGVGGPMRNMA-VF-SG--ASIEGVTINEYQVRVGNKYHAQQGLedICHTTQGDFQNLPQEWTgQFDVAYEIEA-TC--HSPDKTQTFSQVAKCLKKGG 266
                 59*******9998887.45.56..9************************988889*********99988*******655.44..45677778*********998 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   9.4e-10   9.9e-07       1      98 [.     171     267 ..     171     268 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 9.4e-10
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg..ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 L++GcG+G  +r ++   +++++ gv i+++++    + +a+++ +++  ++  + d  +l ++  ++fDv++ +++  h +d+++++++++k+Lk+gG 
  MMETSP0890-20130614|5923_1 171 LDVGCGVGGPMRNMAVF-SGASIEGVTINEYQVRVGNKYHAQQGLEDI--CHTTQGDFQNLPQEwtGQFDVAYEIEATCHSPDKTQTFSQVAKCLKKGGL 267
                 8**********999655.999999*********777777788777664..44444444444444559********************************7 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         8   8.4e+03      70      79 ..     109     130 ..      71     151 .. 0.69
   2 !   27.5   0.0   3.2e-09   3.4e-06       1     107 [.     166     268 ..     166     270 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 8
   PF12847.2  70 r...........fDavllkg.l 79 
                 r           +D+v++   +
  MMETSP0890-20130614|5923_1 109 RqqgyatmvtnfYDLVTDFYeY 130
                 2444445555668888887644 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 3.2e-09
   PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsllerfDavllkgltldallal.deprrvlealpkllkpggrl 107
                 +g + lD+GcG+G     +a  + ga + gv ++e  +++ ++  ++++le+ ++  qgd+ +  +++ ++fD++   +     ++++ +++++ +++++k lk+gg +
  MMETSP0890-20130614|5923_1 166 PGIKALDVGCGVGGPMRNMAV-FSGASIEGVTINEYQVRVGNKYHAQQGLEDICHTTQGDFqNLPQEWTGQFDVAYEIE-----ATCHsPDKTQTFSQVAKCLKKGGLF 268
                 57789********99999999.8*******************999889*************999*************88.....88888******************86 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     1e-06    0.0011      42     151 ..     161     270 ..     151     281 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1e-06
  PF01209.13  42 lvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinief.lqanaeeLpfed.dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                 + + k+g k+lDv +G g    +++    +   ++++ ine  ++vg+k   ++g  +i +  q++ ++Lp e  + fDv          +Dk++++ ++ + lk GG +  
  MMETSP0890-20130614|5923_1 161 RLGMKPGIKALDVGCGVGGPMRNMAVF--SGASIEGVTINEYQVRVGNKYHAQQGLEDICHtTQGDFQNLPQEWtGQFDVAYEIEATCHSPDKTQTFSQVAKCLKKGGLFAG 270
                 567899************988887654..555799**********************9965268999****99769999754334455679*****************9875 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.4e-06    0.0067       3      76 ..     169     241 ..     167     271 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.4e-06
   PF13659.1   3 rvldpgcGsGtfllaal.ellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvt 76 
                 + ld+gcG G  +  ++   + a + gv ++++ +++ ++  a+ gl++ ++ +qgd+++l+++  +g+fd+ + 
  MMETSP0890-20130614|5923_1 169 KALDVGCGVGGPMRNMAvFSG-ASIEGVTINEYQVRVGNKYHAQQGLEDICHTTQGDFQNLPQEW-TGQFDVAYE 241
                 569********7755551556.****************************************877.699999765 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.7e-05      0.06      23      93 ..     158     228 ..     148     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.7e-05
                 HHHHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-STTTT CS
   PF05175.9  23 LletlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdllee 93 
                 L + l  k++ k+lD+GcG+G    ++a  s   +++ v in+  v++ ++  ++++le+ +++++ d  + 
  MMETSP0890-20130614|5923_1 158 LCSRLGMKPGIKALDVGCGVGGPMRNMAVFSGA-SIEGVTINEYQVRVGNKYHAQQGLEDiCHTTQGDFQNL 228
                 778888889999********9988888887776.8************************9999999887654 PP

>> PF03072.9  MG032/MG096/MG288 family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.5e-05     0.079      54     101 ..     199     247 ..     189     257 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.5e-05
   PF03072.9  54 kfkfevklkyegsyklkwwtallak.lggiPgeWkGelkvkfvvdGdvp 101
                 ++++ v  ky+ + +l+ +  ++   + ++P+eW G+++v ++++ + +
  MMETSP0890-20130614|5923_1 199 EYQVRVGNKYHAQQGLEDICHTTQGdFQNLPQEWTGQFDVAYEIEATCH 247
                 58888899999999999988777556*****************987665 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00018      0.18       4      63 ..     170     230 ..     168     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00018
   PF09445.5   4 vlDlfaGaGGnviqfanv.fdkviaieinlsklklaqhNaevYgvsdkitlvlgdvfella 63 
                  lD+ +G+GG + ++a   + ++ ++ in++++++ ++     g +d  ++ +gd+++l +
  MMETSP0890-20130614|5923_1 170 ALDVGCGVGGPMRNMAVFsGASIEGVTINEYQVRVGNKYHAQQGLEDICHTTQGDFQNLPQ 230
                 69**************97699****************99999999**999*****998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.67
# Mc/sec: 1477.16
//
Query:       MMETSP0890-20130614|5927_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.64
# Mc/sec: 670.23
//
Query:       MMETSP0890-20130614|5929_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-30  106.3   0.0    1.8e-30  105.8   0.0    1.2  1  PF02146.12 Sir2 family


Domain annotation for each model (and alignments):
>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   1.3e-34   1.8e-30       1     181 []      53     232 ..      53     232 .. 0.84

  Alignments for each domain:
  == domain 1    score: 105.8 bits;  conditional E-value: 1.3e-34
                 -----TT-------.-----TTTS-HHHHTCHHHHHC-HHHHHH...HHHHCCCCCCT..S---HHHHHHHHHHH---EEEEEE--SS-HHHH----..SEEE----TTEEEETTTS-EEEECC.GGTCCCHH--.B-ST---BEEESS--B-----.HHHHHHHHHHHH-SEEEE----S-STT CS
  PF02146.12   1 GAGiStesGipdfRskkeGlyaklakeelaspealfsnkllkeepevfynlarellpkaeakpnaaHkflkklekkgkllrliTQNidnLekkaGsk..kvvelHGslakakcvkCeakesgee.lkeeieaekveecekcgkllkpdvvfFGealp.eklkkllekveeadlllviGtSlkVap 181
                 GAGiS+++GipdfR   +G+++  +k + +  +  +++k + e+  v  ++a +   +++a+p+++H +l  l+k+gkl+ + TQN+d L+ ++G+   ++  lHG +++ +c +C++++ +++ l     +++ + c++cg  ++ +v  + + ++ ++++  ++++++adl l++GtSl+++p
  MMETSP0890-20130614|5929_1  53 GAGISVAAGIPDFRG-PQGIWTLEDKAKREGDKRKKRKKNKIES--VDTSIAGAS--FETAEPTKTHLALVALQKAGKLSFCATQNVDRLHITSGMPrdRLAILHGCVFTEQCETCDYEVVHDRdLGGVSFQSTGNLCPRCGDNMRDTVLDWNDGIQdQEWEPSVSEFKNADLALCLGTSLRITP 232
                 9*************5.*****98777764433333333333333..334444444..458************************************9899******************9876651566666667779********************99**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       822  (0.0601229); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:01.44
# Mc/sec: 560.81
//
Query:       MMETSP0890-20130614|5931_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.077   13.1   3.3       0.13   12.4   2.3    1.3  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
        1.1    8.1   3.0        1.4    7.8   2.1    1.1  1  PF01544.13 CorA-like Mg2+ transporter protein
        2.5    7.3  10.7       0.75    8.9   5.0    1.8  2  PF05308.6  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.3   2.8e-05      0.13      24     105 ..      26     141 ..      19     152 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-05
   PF10152.4  24 veiersLqqlElklqlLeakLasidgleeledqd.........................elpappaaarrsggpppppg.........araeaaaqeaeaaraetpaeqepealae 105
                 +++ +++ +lEl+ + Le+ L  + g+ee ++                           +  +++++++++gg+p p +         +++++a   +e++++++p++ e+++++ 
  MMETSP0890-20130614|5931_1  26 LALRQRVHELELRCETLERELRVARGEEEDTVMLrgvrtrtrrddkdepllfdnlrhqqSIYKSTVKRQNRGGRPRPLAserraakscKQVATATLREEEPPPPPPPPIESPRESD 141
                 6788999**************99997777755447788888888899999999999888788888888999999988887765555552222222222333333333223333333 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.1    0.0003       1.4     142     229 ..      14      94 ..       3      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0003
  PF01544.13 142 edetkkellreilqlrrelvrlrrallplrdvlkrllrrkdkkllteedkeylrdlldelerllemaealrerlrslqdtylsllsnr 229
                 +++ ++e ++eil+lr+++ +l+    +l++ l r+ r   ++   eed   lr ++ +++r +++  +l + lr+ q++y s++  +
  MMETSP0890-20130614|5931_1  14 DESDDEERADEILALRQRVHELELRCETLEREL-RVAR---GE---EEDTVMLRGVRTRTRRDDKDEPLLFDNLRHQQSIYKSTVKRQ 94 
                 7889999**************************.9999...44...444455******************************998754 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.064   2.9e+02      62     102 ..      48      88 ..      41     110 .. 0.64
   2 ?    8.9   5.0   0.00016      0.75     165     204 ..     101     140 ..      76     152 .. 0.62

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.064
   PF05308.6  62 vaedeeesyarlRsdvrskreeekksellvlk.lsrnssvPn 102
                 va+ eee  + lR  vr ++++  k+e l +  l +++s+ +
  MMETSP0890-20130614|5931_1  48 VARGEEEDTVMLR-GVRTRTRRDDKDEPLLFDnLRHQQSIYK 88 
                 6777777777777.4555544444554444443777776654 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00016
   PF05308.6 165 lslkssstasvvisdpteepelevppppppPpPlpavslq 204
                  +l+s  +a+  + ++ +++  e++pppppPpP+ ++   
  MMETSP0890-20130614|5931_1 101 RPLASERRAAKSCKQVATATLREEEPPPPPPPPIESPRES 140
                 4455567888888888788877777777777777665433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 564.07
//
Query:       MMETSP0890-20130614|5933_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-23   81.4   3.2      1e-22   80.7   2.3    1.4  1  PF00480.15 ROK family
  ------ inclusion threshold ------
      0.023   14.1   0.8      0.068   12.6   0.6    1.8  1  PF02625.11 XdhC and CoxI family


Domain annotation for each model (and alignments):
>> PF00480.15  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   2.3   1.5e-26     1e-22      53     179 .]      29     159 ..       4     159 .. 0.89

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 1.5e-26
  PF00480.15  53 v...gvgigvpGivnkdqgtivstPnikwadvdlvkkleerlnv...pvvlendanaaalaEkvfgaakdvsnviyvtigtGiGaGviingklirGangeaGeighilldengekcgCgnkgClEtiaSgral 179
                 +   gvg+g pG v +d g+++ + n++w+ v+l+ ++  +l++    vv+ nda aa  aE ++gaa+  ++  ++t+gtG+G G+++ gk+++G+  ++ e gh+ + +ng +c+Cg +gClE+ aS +a+
  MMETSP0890-20130614|5933_1  29 ShiiGVGVGTPGAVIDD-GYVTGSGNLGWHRVPLKWMMADALGLndtKVVVLNDADAAIHAELWVGAASRRNSAALLTLGTGVGCGIAVFGKVVTGTTSTM-EGGHMIIVQNGRQCACGGRGCLEAHASATAI 159
                 04469************.7**********************9863337************************************************76665.88**************************997 PP

>> PF02625.11  XdhC and CoxI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6     1e-05     0.068      15      56 ..     120     159 ..     114     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1e-05
                 EEEE----SS----EEEEE----EE-------HHHHHHHHHH CS
  PF02625.11  15 VveteGSaprkaGakmlvsadgrivGtiGGGclEadvieeAr 56 
                 Vv   G +   +G +m++ ++gr++   G GclEa + + A 
  MMETSP0890-20130614|5933_1 120 VVT--GTTSTMEGGHMIIVQNGRQCACGGRGCLEAHASATAI 159
                 554..888889************999999*******998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.74
# Mc/sec: 1071.88
//
Query:       MMETSP0890-20130614|5938_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   12.5   1.5      0.083   12.2   1.0    1.2  1  PF04521.8 ssRNA positive strand viral 18kD cysteine rich protein


Domain annotation for each model (and alignments):
>> PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0     6e-06     0.083      58     106 ..      12      60 ..      11      74 .] 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6e-06
   PF04521.8  58 eKHkklveslawrsaqlseleleLekL.erreeqLktqiqkltaaaklak 106
                 eKH ++  s    +a l++++ eL +L er++e L +  q+  ++ k ++
  MMETSP0890-20130614|5938_1  12 EKHSEYITSYERENASLQKADVELFYLfERQNEDLNLCKQN-GKKGKRKR 60 
                 8***********************99967778888874444.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1206  (0.0882095); expected 273.4 (0.02)
Passed bias filter:                      645  (0.0471767); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.72
# Mc/sec: 246.29
//
Query:       MMETSP0890-20130614|5942_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-19   69.1   0.1    2.7e-08   33.2   0.0    3.2  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.4e-06     0.046      47      74 ..       1      28 [.       1      45 [. 0.87
   2 !   19.2   0.0   4.8e-08   0.00065       9      92 ..      64     140 ..      57     144 .. 0.90
   3 !   33.2   0.0     2e-12   2.7e-08       5      91 ..     153     236 ..     151     241 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.4e-06
                -HHHHHHHHHH---GGGG---HHHHHHH CS
  PF00153.22 47 ildalkkiykeeGirglyrGllpnllrv 74
                +++++ k+y+e Gi  ly+G++ +l+++
  MMETSP0890-20130614|5942_1  1 MIKTIAKLYDEGGIGRLYKGVGFALVQS 28
                578999*****************99965 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 4.8e-08
                 HH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH--..-GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   9 llaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeG..irglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                  +++++Aga+ +++ tP+d++Kt  q           g ld lk  +k+ G  ++ ly G l+    + + +  +f+ty+tl  ++
  MMETSP0890-20130614|5942_1  64 QAVASAAGAVWRIFLTPIDTLKTSSQ---------VGGGLDSLKIKLKNSGdnLLILYNGALTGAAATWIGSYPWFLTYNTLDGFF 140
                 567899********************.........8899************99999********9999999********9998776 PP

  == domain 3    score: 33.2 bits;  conditional E-value: 2e-12
                 HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG.---HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirgly.rGllpnllrvvpaaaikfvtyetlkkl 91 
                 ++++++ G++A  +++++ + l v+Kt +q    +++ ++ ++l++ k+i++e+G++gl  rGl ++l  ++++ a+   + +++ ++
  MMETSP0890-20130614|5942_1 153 LIHRATLGVCASSVSDICSNSLRVIKTGIQ----TSDDPQANALSIAKQIIDEDGFTGLLgRGLQTRLAVNAIQGAVFSIAWKYFESI 236
                 567899************************....999999****************99866**************9987777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:01.08
# Mc/sec: 536.96
//
Query:       MMETSP0890-20130614|5941_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-23   80.8   0.0    1.7e-22   79.9   0.0    1.5  1  PF00005.22 ABC transporter
    1.2e-07   31.9   0.1     0.0026   17.6   0.1    2.4  2  PF13304.1  AAA domain
      4e-07   29.3   0.0    3.2e-05   23.1   0.0    2.1  2  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00065   19.9   0.3     0.0029   17.9   0.1    1.9  2  PF13191.1  AAA ATPase domain
     0.0015   18.5   0.0     0.0034   17.3   0.0    1.7  1  PF13401.1  AAA domain
     0.0026   18.4   1.1      0.013   16.1   0.1    2.1  2  PF13207.1  AAA domain
     0.0035   16.7   0.5     0.0074   15.6   0.4    1.5  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.013   15.2   0.0       0.04   13.6   0.0    1.8  2  PF01935.12 Domain of unknown function DUF87
      0.014   13.8   0.1        2.1    6.7   0.0    2.1  2  PF09818.4  Predicted ATPase of the ABC class
      0.021   13.9   0.0      0.045   12.8   0.0    1.6  1  PF12846.2  AAA-like domain
      0.024   14.0   0.0       0.25   10.7   0.0    2.1  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.039   14.1   0.0      0.091   12.9   0.0    1.7  1  PF13238.1  AAA domain
      0.057   13.2   0.3       0.85    9.4   0.2    2.5  1  PF13558.1  Putative exonuclease SbcCD, C subunit
      0.086   12.6   0.2       0.68    9.7   0.0    2.3  3  PF13521.1  AAA domain
      0.091   12.6   0.0       0.25   11.2   0.0    1.8  2  PF01926.18 50S ribosome-binding GTPase
      0.098   12.4   1.9        1.2    8.8   1.3    2.3  1  PF13671.1  AAA domain
      0.099   12.2   0.0       0.21   11.1   0.0    1.5  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.13   11.3   0.0       0.23   10.5   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
       0.13   11.4   0.8       0.22   10.7   0.3    1.7  2  PF13481.1  AAA domain
       0.19   11.8   0.9         17    5.5   0.0    3.1  3  PF00910.17 RNA helicase


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   2.4e-25   1.7e-22       1     118 []      25     150 ..      25     150 .. 0.96

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 2.4e-25
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 STLl+ll + ++p +g+i +d  +kd+++ ++++lr  +g++pqd +l  + t++ n+++++ +k +++++ +++++  ++ ++++          +r+ +LSgG+kqrvalAra+lk++++ ++DE+t+
  MMETSP0890-20130614|5941_1  25 STLLRLLFRFYDPWSGRILLD--GKDIKDVDVRQLRrlLGVVPQDTTLL-NDTIFHNIAYGDLSK-SKDQVLAAAQAAAIHTAIQRmpngyetnvgERGLKLSGGEKQRVALARAILKDAPVCIWDEATS 150
                 9********************..678899999999999***********.*************98.****************99999*****************************************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   3.8e-06    0.0026       3      47 ..      15      43 ..      13      61 .. 0.71
   2 !   12.1   0.0   0.00019      0.13     220     286 ..     103     168 ..      54     193 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.8e-06
   PF13304.1  3 viiGpNgsGKSnlLkaldflfr..delvlglnldrslnvniekipfl 47
                +i+G  gsGKS+lL+ l+ +++  +                   + l
  MMETSP0890-20130614|5941_1 15 GIVGGSGSGKSTLLRLLFRFYDpwS------------------GRIL 43
                79*****************986531..................2222 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00019
   PF13304.1 220 dviflkkgdggelplsdl..SdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkels 286
                  +  +++g++ ++  + l  S G+k+  al+ a+l +    +v ++DE  + L+ +   ++++ +++ +
  MMETSP0890-20130614|5941_1 103 AIQRMPNGYETNVGERGLklSGGEKQRVALARAILKDA---PVCIWDEATSALDSHTEAEIVKHFQDVT 168
                 55556666666666666666******************...**************99999999886554 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.035        24      28      42 ..      15      29 ..       4      36 .. 0.83
   2 !   23.1   0.0   4.6e-08   3.2e-05     111     209 ..      42     190 ..      33     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.035
                EE--------HHHHH CS
                xxxxxxxxxxxxxxx RF
  PF02463.14 28 aivGpNGSGKsnvld 42
                 ivG  GSGKs +l 
  MMETSP0890-20130614|5941_1 15 GIVGGSGSGKSTLLR 29
                69*********9985 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4.6e-08
                 EEE---EE-HHHHHHHHHCTT--TT......................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 111 ykingkevtkkevaellesagiske......................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklv 209
                 + ++gk+++  +v++l +  g+ ++                                                      +LSgGek+ vala   A    k ap+++ De  +aLD +  +++++ ++  +     + i++r ++l ++++++
  MMETSP0890-20130614|5941_1  42 ILLDGKDIKDVDVRQLRRLLGVVPQdttllndtifhniaygdlskskdqvlaaaqaaaihtaiqrmpngyetnvgerglKLSGGEKQRVALAR--A--ILKDAPVCIWDEATSALDSHTEAEIVKHFQDVTYGRTCLTIAHRLSTLMNSHSII 190
                 56788888888888888888888778888888888888888888888888888888888888999999999999999999******9888764..3..578999999************************9999*******99999988776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   4.2e-06    0.0029      22      86 ..      11      65 ..       5     108 .. 0.71
   2 ?   -1.1   0.0       2.9     2e+03      75     118 ..     214     261 ..     181     273 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.2e-06
   PF13191.1 22 gsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa...lrellrqlltel 86
                g+ +l ++G sG+GKS+Llr      l++ +  ++g++ + + ++       +   +r+l r l+   
  MMETSP0890-20130614|5941_1 11 GQ-SLGIVGGSGSGKSTLLRL-----LFRFYDPWSGRILLDGKDI-------KdvdVRQLRRLLGVVP 65
                44.7779**************.....*999999999999999983.......1123555544444433 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.9
   PF13191.1  75 lrellrqlltelaaelggwreallaalga....lipelegiiglqalv 118
                 + el++q ++ la+ ++++ + l a+++        e ++i + +++ 
  MMETSP0890-20130614|5941_1 214 YAELWNQQASWLADDISDDDDDLGADSPYsnnsDNDEEDDIRDHTNTS 261
                 666777777777777777777666666664444333444444444444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     5e-06    0.0034       8      83 ..      15      99 ..      10     184 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5e-06
   PF13401.1  8 vvtGesGvGKTtllrrlarqldeeaeaae.........karvv...fveapastspkellqkllsalglpakgrltteellealqeal 83
                 ++G sG+GK+tllr l+r +d ++             + r++   +  +p+  + + l  ++++++ ++  + ++++++l+a q a+
  MMETSP0890-20130614|5941_1 15 GIVGGSGSGKSTLLRLLFRFYDPWSGRILldgkdikdvDVRQLrrlLGVVPQ--DTTLLNDTIFHNIAYGDLS-KSKDQVLAAAQAAA 99
                58999***************99877666699888888855555421333344..4477888888888888888.66666665555544 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1     2e-05     0.013       3      32 ..      15      56 ..      14     105 .. 0.67
   2 ?    0.5   0.0       1.4   9.3e+02      14      66 ..     175     230 ..     174     267 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2e-05
                --B--TT---HHHHHHHHHHS............TEEEEEGGG CS
   PF13207.1  3 aitGppGsGKsTlakeLaerl............glpvlsldd 32
                +i+G +GsGKsTl ++L + +            +++ ++  +
  MMETSP0890-20130614|5941_1 15 GIVGGSGSGKSTLLRLLFRFYdpwsgrilldgkDIKDVDVRQ 56
                79**************96655444322233333355444444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHST...EEEEEGGGB--GGGS-B--.---B--SSGGGB-HHHHHHHH.. CS
   PF13207.1  14 TlakeLaerlg...lpvlslddllreeglkeld.dgereskdadadllaaildglaa 66 
                 T+a +L+   +   ++vl+ ++++ + + +el  ++   ++ +  + +a++l+++  
  MMETSP0890-20130614|5941_1 175 TIAHRLSTLMNshsIIVLDRGSIVEQGTHAELMlKPQ-GRYAELWNQQASWLADDIS 230
                 5666665554333366777777533344446665555.4445566666666665532 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   1.1e-05    0.0074      22      40 ..      10      28 ..       2      31 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-05
   PF13555.1 22 kgkntlltGasGsGKSTll 40
                +g++  ++G sGsGKSTll
  MMETSP0890-20130614|5941_1 10 AGQSLGIVGGSGSGKSTLL 28
                677888***********97 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.8e-05      0.04      24      45 ..      12      33 ..       9      45 .. 0.88
   2 ?   -1.6   0.0       2.5   1.7e+03      43      59 ..     176     193 ..     128     253 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.8e-05
  PF01935.12 24 rHlAilgsTGsGKSntvavLle 45
                ++l+i+g +GsGKS++ ++L++
  MMETSP0890-20130614|5941_1 12 QSLGIVGGSGSGKSTLLRLLFR 33
                679***************9975 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.5
  PF01935.12  43 Lleelle.kkgatililD 59 
                 + ++l    ++ +i++lD
  MMETSP0890-20130614|5941_1 176 IAHRLSTlMNSHSIIVLD 193
                 333444422333555555 PP

>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0089       6.1     247     263 ..      14      30 ..       4      38 .. 0.80
   2 ?    6.7   0.0    0.0031       2.1     301     352 ..      99     151 ..      92     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0089
   PF09818.4 247 tlIvGggyhGKsTLLeA 263
                   IvGg   GKsTLL+ 
  MMETSP0890-20130614|5941_1  14 LGIVGGSGSGKSTLLRL 30 
                 459************85 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0031
   PF09818.4 301 dispFinnLPegkdtt.efstedASGStsqAanimealeagakllLiDEDtsA 352
                  i + i+ +P+g++t+      + SG  +q +++++a+   a++ + DE tsA
  MMETSP0890-20130614|5941_1  99 AIHTAIQRMPNGYETNvGERGLKLSGGEKQRVALARAILKDAPVCIWDEATSA 151
                 57888***********65666689****************************9 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.6e-05     0.045       5      23 ..      15      33 ..      11      62 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-05
   PF12846.2  5 lilGppGsGKSvllkklvl 23
                 i+G +GsGKS+ll+ l++
  MMETSP0890-20130614|5941_1 15 GIVGGSGSGKSTLLRLLFR 33
                69*************9975 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00036      0.25       7      35 ..       3      31 ..       2      59 .. 0.92
   2 ?    0.7   0.0      0.41   2.8e+02      95     145 ..     159     210 ..     148     221 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00036
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  7 DslfPivqGqttlipGafgcGktvisqsl 35
                D+ f++  Gq  +i+G++g Gk++++  l
  MMETSP0890-20130614|5941_1  3 DISFTVPAGQSLGIVGGSGSGKSTLLRLL 31
                78899*******************98766 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.41
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20  95 tlAeyfrd..qgknVlliaDslsrwaealreisgrlgempadqgypaylgakl 145
                 ++ ++f+d   g+ +l ia  ls ++++ + i +  g    +qg  a+l+ k 
  MMETSP0890-20130614|5941_1 159 EIVKHFQDvtYGRTCLTIAHRLSTLMNSHSIIVLDRGS-IVEQGTHAELMLKP 210
                 55667777666888999999999999999999999998.67888888887765 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.091       3      21 ..      16      33 ..      14     108 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
   PF13238.1  3 itGtpGvGKtTlakeLaer 21
                i+G +G+GK+Tl+++L  r
  MMETSP0890-20130614|5941_1 16 IVGGSGSGKSTLLRLL-FR 33
                99*************9.33 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2    0.0012      0.85      17      86 ..     106     162 ..      90     166 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0012
   PF13558.1  17 rdedgkekelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniaslle 86 
                 r ++g e+++ +r  +lSGGEkq         Ala ++ +          ++ DEA+s lD+++ a++++
  MMETSP0890-20130614|5941_1 106 RMPNGYETNVGERGLKLSGGEKQR-------VALARAILK------DAPVCIWDEATSALDSHTEAEIVK 162
                 468899999999999*******43.......333333333......134677788888888887777666 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00099      0.68       4      19 ..      16      31 ..      14      41 .. 0.90
   2 ?   -2.3   0.0       5.1   3.5e+03      81     100 ..      74      92 ..      56     118 .. 0.58
   3 ?   -0.3   0.0       1.2   8.1e+02      51      86 ..     165     200 ..     127     224 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00099
   PF13521.1  4 itGgpstGKTtlleaL 19
                i+Gg+++GK+tll+ L
  MMETSP0890-20130614|5941_1 16 IVGGSGSGKSTLLRLL 31
                89***********988 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 5.1
   PF13521.1  81 glldtlaYarllggdaekel 100
                  +++ +aY +l+  + ++ l
  MMETSP0890-20130614|5941_1  74 TIFHNIAYGDLSKSK-DQVL 92 
                 344444444444443.2222 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1.2
   PF13521.1  51 dllafaeavleaqleqeaaaaaskllfcDrglldtl 86 
                 + + + + +l+ + +  +  +++ ++++Drg + + 
  MMETSP0890-20130614|5941_1 165 QDVTYGRTCLTIAHRLSTLMNSHSIIVLDRGSIVEQ 200
                 335566777776666666678899999999988765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.25       2      20 ..      14      32 ..      13     105 .. 0.91
   2 ?   -1.5   0.0       3.2   2.2e+03      13      13 ..     181     181 ..     121     221 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00036
                EEEE--TT---HHHHHHHH CS
  PF01926.18  2 vaivGrpNvGKStLinaLt 20
                ++ivG + +GKStL++ L+
  MMETSP0890-20130614|5941_1 14 LGIVGGSGSGKSTLLRLLF 32
                68*************9997 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3.2
                 H CS
  PF01926.18  13 S 13 
                 S
  MMETSP0890-20130614|5941_1 181 S 181
                 1 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3    0.0018       1.2       4      21 ..      16      33 ..      14     185 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0018
   PF13671.1  4 lvGlpGsGKstlaerllk 21
                +vG +GsGKstl++ l++
  MMETSP0890-20130614|5941_1 16 IVGGSGSGKSTLLRLLFR 33
                5899*********99875 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00031      0.21       3      22 ..      14      33 ..      12      37 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00031
                EEEE-------HHHHHHHHH CS
   PF03205.9  3 vavvGpkdsGKTtlieklvn 22
                + +vG ++sGK+tl++ l +
  MMETSP0890-20130614|5941_1 14 LGIVGGSGSGKSTLLRLLFR 33
                579************99876 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034      0.23      36      56 ..      12      32 ..       2      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00034
                SBEEEE-------HHHHHHH- CS
  PF03193.11 36 ktsvlvGqSGvGKSsLinall 56
                +   +vG SG GKS+L+  l 
  MMETSP0890-20130614|5941_1 12 QSLGIVGGSGSGKSTLLRLLF 32
                66779************9886 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00032      0.22      30      50 ..       8      28 ..       4     109 .. 0.90
   2 ?   -2.3   0.0       3.1   2.1e+03     133     133 ..     132     132 ..      78     178 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00032
   PF13481.1 30 lprgsltllaGapgtGKStla 50
                +p+g+ + ++G +g+GKStl+
  MMETSP0890-20130614|5941_1  8 VPAGQSLGIVGGSGSGKSTLL 28
                699****************98 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.1
   PF13481.1 133 l 133
                 l
  MMETSP0890-20130614|5941_1 132 L 132
                 1 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.024        17       3      19 ..      16      32 ..      14      43 .. 0.89
   2 ?    2.1   0.0      0.29     2e+02      49     103 ..     139     191 ..     135     193 .. 0.79
   3 ?    1.3   0.1      0.51   3.5e+02      36      64 ..     207     235 ..     175     247 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.024
  PF00910.17  3 lyGpsgeGKStlakeLa 19
                ++G sg GKStl + L 
  MMETSP0890-20130614|5941_1 16 IVGGSGSGKSTLLRLLF 32
                78**********98875 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.29
  PF00910.17  49 gqevvvidDfgqvkdeenpsdlaelirlvsstpyplnmasleekg.tlftSkvviv 103
                 + +v+++d+  +  d+   + +ae+++ ++ ++y   +  ++    tl++S  +iv
  MMETSP0890-20130614|5941_1 139 DAPVCIWDEATSALDS---HTEAEIVKHFQDVTYGRTCLTIAHRLsTLMNSHSIIV 191
                 6799*****9999999...7888888888888887777777776668888888886 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.51
  PF00910.17  36 srnpeddfwdgYtgqevvvidDfgqvkde 64 
                 + +p+  + + +++q+  + dD++ + d+
  MMETSP0890-20130614|5941_1 207 MLKPQGRYAELWNQQASWLADDISDDDDD 235
                 5678889999999**********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.86
# Mc/sec: 788.57
//
Query:       MMETSP0890-20130614|5939_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-44  150.7   0.0    5.5e-44  149.7   0.0    1.4  1  PF00009.22 Elongation factor Tu GTP binding domain
    1.9e-16   59.9   0.0    1.4e-15   57.2   0.0    2.4  2  PF03143.12 Elongation factor Tu C-terminal domain
    1.1e-08   34.9   2.0    2.4e-08   33.8   1.4    1.6  1  PF03144.20 Elongation factor Tu domain 2
    0.00016   21.5   0.0    0.00054   19.8   0.0    1.9  1  PF01926.18 50S ribosome-binding GTPase
    0.00097   17.8   0.1     0.0015   17.1   0.1    1.2  1  PF00503.15 G-protein alpha subunit
     0.0057   15.7   0.0     0.0092   15.0   0.0    1.3  1  PF07165.6  Protein of unknown function (DUF1397)
  ------ inclusion threshold ------
       0.34   10.4   3.9        1.2    8.6   2.4    2.1  2  PF07145.10 Ataxin-2 C-terminal region


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   2.8e-47   5.5e-44       2     176 ..     151     348 ..     150     385 .. 0.90

  Alignments for each domain:
  == domain 1    score: 149.7 bits;  conditional E-value: 2.8e-47
                 GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHH...HC-..............HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.......S-HHHHHHHHHHHHTT--.EEEEEE-TTST.....CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHH CS
  PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeea...egerl............ldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.......vepqTeevlrlakklgvk.iivviNKiDrv.....eaeleeiveelkekllekylekgeeevpvvpgSalkgegid 176
                 +++n+++ighvD+GK+Tl +++ly +  ++kr+ e+   e  +             +d+++eer++g T++++ + ++  t+ ++++++D+PGH++++  +i+g++++D+ +lv++a+ G          qT+e+++lak+lgv+ +ivv+NK+D++     ++++ee+v +l+  +l++ ++  ++ev+++ +S+l+g ++ 
  MMETSP0890-20130614|5939_1 151 QHLNLVFIGHVDAGKSTLSGNMLYLTDHVDKRTIEKyerE--AKqrnreswflafiMDTNEEERAKGKTVEVGRAPFT--TEAKRYTILDAPGHKNYVPHMISGAAQADVGILVISARRGefetgfeRGGQTREHAMLAKTLGVRhLIVVVNKMDDPtvkwdKKRYEECVTKLR-PFLKQCGYTIKKEVKFLAISGLTGANVL 348
                 79*******************************9996432..3356799*****************************..*******************************************9*9999*********************************************.999999999999************9986 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         1     2e+03      49      68 ..     442     461 ..     426     469 .. 0.68
   2 !   57.2   0.0   6.9e-19   1.4e-15       4      95 ..     483     592 ..     480     594 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1
  PF03143.12  49 sekkefvkpGdnvkveveli 68 
                 ++ ++ +kpG+nv++++  i
  MMETSP0890-20130614|5939_1 442 THIVRSAKPGENVSIKLANI 461
                 44558899*****9998765 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 6.9e-19
  PF03143.12   4 ahtkfkAqvyvlnk...ptpikagYrpvlyvrTadvtgkivellkkld.sekk........efvkpGdnvkvevelikpiavekgk......rFaiReggrTvavGvvte 95 
                 a+t+f+Aq+ +++    +  ++agY ++l+ +T+d ++++++ll +++ ++ k         f+k+G  v + +++ ++i++e +       rF++R++g+ +a+G+v +
  MMETSP0890-20130614|5939_1 483 AVTRFTAQIALVELlehRPVFSAGYDCMLHAHTCDSEVTVTKLLYQVNaTKAKsapskkalAFAKQGAVVVAVLSVPQSICLEAFDdveqlgRFTLRDEGKSIAIGKVLS 592
                 6899999998755444388899**********************9999744446889999***********************************************987 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   1.4   1.3e-11   2.4e-08       1      74 []     405     473 ..     405     473 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.3e-11
                 EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTC.EESEEECEE--EEEESSSGGGGGTT---EEE CS
  PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfng.dldeavaganaGvivaikgledaiikGdtlt 74 
                 Gt+a+g+v++G + +Gd v++  + t   +i+t++ ++       ++ a +g+n+++++a +g+ed i kG +l+
  MMETSP0890-20130614|5939_1 405 GTIALGKVEQGRVTVGDDVVL--SPT---NIRTKIEQVIIGEThIVRSAKPGENVSIKLANIGTED-INKGFVLC 473
                 9********************..655...56688877766555478889*****************.******98 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-07   0.00054       2     114 .]     155     299 ..     154     332 .. 0.58

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.7e-07
                 EEEE--TT---HHHHHHHH.......CSTCTE....................................ETS-TT-SSSESEEEEETTEEEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS...HHHH.........HHHHHHHHHHTCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLt.......gekaak....................................vsdypgtTrditenevkkekiilvDtPGiiegasedkeiegikkylekveradvlllvvdasa...vlke.........adkellneleakkplilvlnk 114
                 ++++G+  +GKStL   ++       +  +                                      v+  p+tT+          +++++D PG          ++ +  ++  + +adv +lv++a++   +  +         +   l++ l   + li+v+nk
  MMETSP0890-20130614|5939_1 155 LVFIGHVDAGKSTLSGNMLyltdhvdK--R-TiekyereakqrnreswflafimdtneeerakgktveVGRAPFTTEAK--------RYTILDAPGH---------KNYVPHMISGAAQADVGILVISARRgefE--TgferggqtrEHAMLAKTL-GVRHLIVVVNK 299
                 689***********9988745443220..2.212233333344444445444444444333333333344444444444........279******2.........12344566777888888888877664430..1333344332333343444.34555555555 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.9e-07    0.0015      14      85 ..     102     179 ..      92     208 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.9e-07
                 ............................--TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXX CS
  PF00503.15  14 lkeapesspseteeqrq.........seeekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkqfkllykpg 85 
                  +++ +++pse++e++           +eek+     ++ ++ +  e+++ +++ +l+++G+ + GKsT+  ++ +l  + 
  MMETSP0890-20130614|5939_1 102 NENELPPPPSEAQEKEItldpptvdsPNEEKSP---TTNTKEADNIEEEDARQHLNLVFIGHVDAGKSTLSGNMLYLTDHV 179
                 223333333333333334569987532233333...3333333445566666789***************99996665443 PP

>> PF07165.6  Protein of unknown function (DUF1397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.7e-06    0.0092     119     175 ..     298     357 ..     276     364 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.7e-06
   PF07165.6 119 kkdGdqialfiaekgpeCleeskdniaeClnklfnsyedveiskllslpe...lgekqCe 175
                 +k  d   ++++++++eC+++ +  +++C  +++++++ + is l+  +    +++kqC+
  MMETSP0890-20130614|5939_1 298 NKMDDPTVKWDKKRYEECVTKLRPFLKQCGYTIKKEVKFLAISGLTGANVlkeVDPKQCD 357
                 555677789999*************************9999998765443345******8 PP

>> PF07145.10  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.15     3e+02       7      14 ..       2       9 ..       2      10 .. 0.90
   2 ?    8.6   2.4   0.00064       1.2       2      18 .]       6      22 ..       5      22 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.15
  PF07145.10  7 NPnAkEFV 14
                NP A+ F 
  MMETSP0890-20130614|5939_1  2 NPDAPAFN 9 
                9****996 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00064
  PF07145.10  2 kkSkLNPnAkEFVPsva 18
                + + +NP+A EF+P++a
  MMETSP0890-20130614|5939_1  6 PAFNFNPSAGEFIPPSA 22
                6789**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:01.17
# Mc/sec: 1226.85
//
Query:       MMETSP0890-20130614|5943_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-21   73.2   0.2    1.1e-20   73.0   0.1    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.1   7.8e-25   1.1e-20       1      57 [.       4      64 ..       4      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 7.8e-25
   PF08373.5  1 ieidGpthFyrns.gvll...gktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57
                ie+dGpth++ +  g+++   g+tk+K riL++lGw+vi++pyfeW+ + +   + +Yl++
  MMETSP0890-20130614|5943_1  4 IEVDGPTHYLIKAkGKHRienGHTKFKSRILRQLGWNVIHVPYFEWEAHIDFAAQDAYLES 64
                9********8777677779******************************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 210.88
//
Query:       MMETSP0890-20130614|5946_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-50  169.4   0.0      2e-48  164.7   0.0    2.0  1  PF00069.20 Protein kinase domain
      5e-45  153.5   0.0    3.2e-36  124.6   0.0    2.1  2  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.097   12.2   0.0       0.19   11.3   0.0    1.5  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.0   4.4e-52     2e-48       4     256 ..      69     359 ..      66     361 .. 0.90

  Alignments for each domain:
  == domain 1    score: 164.7 bits;  conditional E-value: 4.4e-52
                 EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHT...CEE-S--SGGGEEEETT--EEE------EEE.......................................CEESS-CSS----GGGS-HHHHH.....TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsn...giiHrDLKpeNiLldkkgelkiaDFGlakkl.......................................eksseklttlvgtreYmAPEvll.....kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 +++lG+GsfG+V  a++++t+  vA+Kil ++ ++++++    +E++++++l+Hpniv++l++  +  +l lv+ey+++g+l d+++ + k +++   +++ ++++gleylHs+    +iHrD+Kp+N+Ll+ ++++k+ DFG+a++                                          s e+lt+ +gt ++mAPEv       + ++yt+k+D++sl ++++ + ++ lp   ++++ + ++++ + +k+ ++ +++     ++++d+i ++++ d+++R++a+++l 
  MMETSP0890-20130614|5946_1  69 GKELGRGSFGVVRAAVWRHTP--VAIKILYQDAQSEDQS-LFEQEVAMMATLHHPNIVQFLGYT-RTPSLTLVIEYFPEGSLEDYIR-KHKSNQKVSLRFCFEMACGLEYLHSRspsIVIHRDIKPANFLLTASHRVKLGDFGIARTRrhnephdpasmlflppepigvsgstttalpssissirrdLPSTEDLTSNCGTVRFMAPEVASpdgkkTYTKYTAKADIFSLSLVYFFVWERVLPAIPNHNTPATHFLAIRAGKRPPFTSRTP----KTARDIIVSMWNLDADARPSAADLLD 359
                 689*****************9..******9999888775.3345******************99.5778999***************.555566666677789**********967679***************************989************************************9999999****************7777777999*********************9999888777777777777777777776655....99********************9986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0   6.9e-40   3.2e-36       4     157 ..      69     215 ..      66     237 .. 0.91
   2 !   27.0   0.0   4.4e-10     2e-06     165     258 ..     260     360 ..     245     361 .. 0.85

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 6.9e-40
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTT...EEEST-SGGGEEEETTTEEEE-----CEESTTTS CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskk...lvHrdLaarNvLleeekvvkisDfGLardiekdd 157
                 gk+lG+G+fG V  ++++      ++ Va+K+l ++a++e+++ f +e+++m +l+hpniv++lg+   + +l +v+ey ++G+L++++rk+   k + k  l+f++++a G+eyL+s++   ++Hrd+   N Ll+ ++ vk++DfG+ar+  +++
  MMETSP0890-20130614|5946_1  69 GKELGRGSFGVVRAAVWR------HTPVAIKILYQDAQSEDQSLFEQEVAMMATLHHPNIVQFLGYTR-TPSLTLVIEYFPEGSLEDYIRKH---KSNQKVSLRFCFEMACGLEYLHSRSpsiVIHRDIKPANFLLTASHRVKLGDFGIARTRRHNE 215
                 799***************......9****************************************988.7789******************9...77778889***************988889***************************985544 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 4.4e-10
                 -EECGGGS-HHHHHHSE......EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  PF07714.12 165 aklpvkWmapEslkekk......ftsksDvWsfGvllwEiftlgespypgl.sneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelvek 258
                 +   v++mapE+ +         +t k+D++s + + + + ++    +p+  ++++ + ++++gkr +  + +p++  +++ + w+ +++ Rp+ ++l ++
  MMETSP0890-20130614|5946_1 260 NCGTVRFMAPEVASPDGkktytkYTAKADIFSLSLVYFFVWERVLPAIPNHnTPATHFLAIRAGKRPPFTSRTPKTARDIIVSMWNLDADARPSAADLLDT 360
                 55689*******98655567778*************9999999988888886666677788*********************************9999876 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05      0.19      88     187 ..     100     200 ..      79     210 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHHHHHHHHHHHHS-.-TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHH...HHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEE CS
  PF01636.18  88 arqlpallealaellaalhqad.paadpladflapyltllrllesataalvasellelleeleer...vlaalaallpgaeppvllHgDlhpgNllvdpddgrv 187
                 +++++ l+e+ ++++a lh+    ++ + ++ +     +  ++++  + +  ++ +   +++  r    +a  ++ l++ +p  ++H+D++p+N l++    rv
  MMETSP0890-20130614|5946_1 100 QSEDQSLFEQEVAMMATLHHPNiVQFLGYTRTPSL-TLVIEYFPEGSLEDYIRKHKS-NQKVSLRfcfEMACGLEYLHSRSPSIVIHRDIKPANFLLT-ASHRV 200
                 55566666666666666666655555555555522.334444444433222222222.3333333444445556666667779***************.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.45s 00:00:01.13 Elapsed: 00:00:00.82
# Mc/sec: 1092.97
//
Query:       MMETSP0890-20130614|5945_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   12.3   6.5      0.023   11.9   4.5    1.1  1  PF12128.3  Protein of unknown function (DUF3584)
      0.018   13.6   0.1      0.029   12.9   0.1    1.3  1  PF00503.15 G-protein alpha subunit
      0.035   13.9   0.1       0.48   10.2   0.0    2.5  2  PF09941.4  Uncharacterized conserved protein (DUF2173)
       0.18   11.3   4.5       0.52    9.7   1.6    2.5  2  PF04048.9  Sec8 exocyst complex component specific domain
       0.22   11.2   8.0       0.34   10.6   4.9    1.8  1  PF04043.10 Plant invertase/pectin methylesterase inhibitor
       0.32   11.1   2.3       0.78    9.8   1.6    1.8  1  PF01519.11 Protein of unknown function DUF16
       0.44   10.3  12.9        1.9    8.2   0.3    3.1  3  PF09486.5  Bacterial type III secretion protein (HrpB7)
        0.6   10.0   9.5        6.7    6.6   0.7    3.3  4  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        1.6    7.7   5.1        4.5    6.2   3.5    1.8  1  PF04582.7  Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.5   1.5e-05     0.023     600     696 ..      32     128 ..      17     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
   PF12128.3 600 aseeeLrerlqaleealqsaeakqkqaeeqlkqlnaeleeakravaeakqa.lkqarlelqrlkneqqslkdklekalaerkqqaeeqlqkldaelkq 696
                 ++ ++L+   ++++++l +a+a+q+qa + l+++na++ ++k++ a a  + ++ ++l ++    e +++ ++l++a+++ ++ a+++l+ ++ + k 
  MMETSP0890-20130614|5945_1  32 QNHNKLKGTFAVAKSELMDAKASQAQAQQDLNKANAKMAQLKKSNASAVDTlVEVQDLAIKECVFELDAMTKRLNEATTAVRD-AQTELNAFATQVKT 128
                 56669************************************999988876615778888889999999999999999988765.78899999998875 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.9e-05     0.029     148     209 ..      78     192 ..      11     212 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
                 ............................................................XXHHHHXXXCTCHHXHHHHHHHTXXXXSXXXTTHHHHHTTHHHHHSTTXXXXHHHHHHXXX CS
  PF00503.15 148 l...........................................................vleelaedikelwndpgvqevlerrrkikledsaeyFldnleriaspdYvPtddDilrarl 209
                 +                                                           +l+el+ +++++w+  ++ + +     +k  +++ yF+++le++as++ v  +   +rarl
  MMETSP0890-20130614|5945_1  78 SavdtlvevqdlaikecvfeldamtkrlneattavrdaqtelnafatqvktgplatrlaqILDELNIQVQAFWQA-FIGNHC-----VKGLENSAYFFNELEKVASKNNVEAEFKDIRARL 192
                 233335556666666666666666666666666666666666777777777777777777999999999999997.444444.....57799****************9988877778887 PP

>> PF09941.4  Uncharacterized conserved protein (DUF2173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2       0.3   4.5e+02       3      55 ..      14      68 ..      12      87 .. 0.48
   2 ?   10.2   0.0   0.00032      0.48      44     107 ..     222     284 ..     209     285 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.3
   PF09941.4  3 lkkLlklpGvvaag..efsddGklveykgelseelaellaklcaantamvemqae 55
                lk L++l+G  +a   e +++ kl  +    + el++  a  ++a + + +++a+
  MMETSP0890-20130614|5945_1 14 LKALVALDGSTTAAltEIQNHNKLKGTFAVAKSELMDAKASQAQAQQDLNKANAK 68
                5666777776655311222222222222222333333333333444333333333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00032
   PF09941.4  44 aantamvemqaegfsalsgkkGweplkGwavagaelsvcvvgnsgvlvenaeadlnkilkalee 107
                 +    +v+  a+g+ + s+k+G  plk  ++a    sv + +++g ++e    ++ +i++ le+
  MMETSP0890-20130614|5945_1 222 RGCGTFVR-LAQGLRQSSDKEGLVPLKRHMYAHMIDSVKIHKTVGLFAESPFESIHAIINKLEA 284
                 55555554.599**************************************99999999999986 PP

>> PF04048.9  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.6   0.00035      0.52      70     118 ..      30      78 ..      14      92 .. 0.87
   2 ?    0.3   0.0      0.28   4.2e+02      81     115 ..      91     125 ..      84     145 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00035
   PF04048.9  70 sigsYskilssitesqekirelKesleeakkklstrkkeLkeLnaesak 118
                  i++++k+  ++  +++++ + K s ++a+++l++ ++++ +L++++a 
  MMETSP0890-20130614|5945_1  30 EIQNHNKLKGTFAVAKSELMDAKASQAQAQQDLNKANAKMAQLKKSNAS 78 
                 69*****************************************998764 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.28
   PF04048.9  81 itesqekirelKesleeakkklstrkkeLkeLnae 115
                 i+e+  ++ ++ ++l+ea++++++ + eL+  +++
  MMETSP0890-20130614|5945_1  91 IKECVFELDAMTKRLNEATTAVRDAQTELNAFATQ 125
                 55566666777788999999999999999887765 PP

>> PF04043.10  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.9   0.00023      0.34      42     119 ..      53     128 ..      43     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHHHHHHHHHHH--......--THHHHHHHHHHHHHHHHH---HHHHHHHH..H-------HHHHHHHH---HH CS
  PF04043.10  42 aavkaalanassaaarlsslskra.....akdprakaaledClelyddavddLsralaalkskasdyddvktwlsaaltnqet 119
                 a+ ++a++ +++a a+++ l+k++     +  +++  a++ C+  +d++ ++L++a++a+    +d   ++t l a  t ++t
  MMETSP0890-20130614|5945_1  53 ASQAQAQQDLNKANAKMAQLKKSNasavdTLVEVQDLAIKECVFELDAMTKRLNEATTAV----RD---AQTELNAFATQVKT 128
                 5556777777888888877877766667777777788***********************....99...99999999998776 PP

>> PF01519.11  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.6   0.00051      0.78      25      91 ..      45     113 ..      27     148 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00051
  PF01519.11  25 hkqldeFKd...andqrltkiEtkvdql..aqgeqikkltetvekqgeqikelqveqkaqgetlqlilktle 91 
                 + +l + K    + +q+l+k ++k++ql  ++    + +   ve+q  +ike   e +a+ ++l+   ++  
  MMETSP0890-20130614|5945_1  45 KSELMDAKAsqaQAQQDLNKANAKMAQLkkSN---ASAVDTLVEVQDLAIKECVFELDAMTKRLNEATTAVR 113
                 5556666633556799**********994444...4444556********************9987666555 PP

>> PF09486.5  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.8    0.0072        11      46     114 ..       7      74 ..       6      85 .. 0.89
   2 ?    8.2   0.3    0.0012       1.9      23      62 ..      90     129 ..      82     166 .. 0.77
   3 ?    0.5   0.0      0.29   4.4e+02      16      39 ..     177     200 ..     163     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0072
   PF09486.5  46 eakadrlaahdarlddlagggasltidaylqlrryrdvlveelaaaeqavaaarqalqakvaelaavrr 114
                 +a+ d+l + + +ld  ++  a  +i++  +l+   +v+  el  a + +a+a+q l+++ a++a+ ++
  MMETSP0890-20130614|5945_1   7 RACYDELLKALVALDGSTT-AALTEIQNHNKLKGTFAVAKSELMDAKASQAQAQQDLNKANAKMAQLKK 74 
                 6788888888999999999.78889999999999999************************99988765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
   PF09486.5  23 elsalraalealdrelaecraaveakadrlaahdarlddl 62 
                 +++++  +l+a+ + l+e   av+ ++++l+a++ ++++ 
  MMETSP0890-20130614|5945_1  90 AIKECVFELDAMTKRLNEATTAVRDAQTELNAFATQVKTG 129
                 57889999**************************999883 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.29
   PF09486.5  16 rderlraelsalraalealdrela 39 
                  +++++ae +++ra+le +  +l 
  MMETSP0890-20130614|5945_1 177 SKNNVEAEFKDIRARLEPVWEALY 200
                 568999999999999997766654 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.2    0.0073        11      26      90 ..      12      76 ..       7      92 .. 0.58
   2 ?    4.8   4.4     0.017        25      46     101 ..      56     109 ..      43     127 .. 0.59
   3 ?    6.6   0.7    0.0044       6.7      20      66 ..      72     119 ..      67     149 .. 0.71
   4 ?    0.0   0.0      0.48   7.3e+02      72     100 ..     174     202 ..     164     205 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0073
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHH CS
  PF02403.17 26 edvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleael 90
                e++++l++ld    ++++e+++ ++ + + + + ++++++k   ++  ++ ++ ++++++l++  
  MMETSP0890-20130614|5945_1 12 ELLKALVALDGSTTAALTEIQNHNKLKGTFAVAKSELMDAKASQAQAQQDLNKANAKMAQLKKSN 76
                67788888888888888888888888887777777777777333333344444444444433322 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  46 eelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekll 101
                  ++q+  N+++++++++kk++  a + + ev++l+  +k+   el++++++l+++ 
  MMETSP0890-20130614|5945_1  56 AQAQQDLNKANAKMAQLKKSNASAVDTLVEVQDLA--IKECVFELDAMTKRLNEAT 109
                 46677789999999999998855555555666554..3333333333333333332 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0044
                 H-.TTHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHGGGTTT.. CS
  PF02403.17  20 kRgedkedvdellelde.errelqveleelqaerNelskeIgkakkkk 66 
                  ++ +++ vd+l+e+++ + +e+ +el+ + ++ Ne++ ++  a  + 
  MMETSP0890-20130614|5945_1  72 LKKSNASAVDTLVEVQDlAIKECVFELDAMTKRLNEATTAVRDAQTEL 119
                 345678899999997553789999999999999999999998888765 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  72 liaevkelkeelkaleaelkeleaelekl 100
                  +a+ +++ +e+k++ a+l+ + ++l ++
  MMETSP0890-20130614|5945_1 174 KVASKNNVEAEFKDIRARLEPVWEALYEI 202
                 56777888888888888888888877776 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.5     0.003       4.5      65     138 ..      48     122 ..      10     177 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.003
   PF04582.7  65 lqdvtsslddvkaelkelstevaalqssvdslsseladlselvsah.daalsslqtevdanstdisnlksdvsan 138
                 l d   s ++++ +l++ ++++a+l++s +s   +l ++ +l+ ++    l  + +  +  +t++ + ++++ a 
  MMETSP0890-20130614|5945_1  48 LMDAKASQAQAQQDLNKANAKMAQLKKSNASAVDTLVEVQDLAIKEcVFELDAMTKRLNEATTAVRDAQTELNAF 122
                 444444444444444444444444444444444444444443322202233333333333344333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1315  (0.096182); expected 273.4 (0.02)
Passed bias filter:                      622  (0.0454944); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:00.76
# Mc/sec: 1037.37
//
Query:       MMETSP0890-20130614|5948_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-83  278.5   0.0    6.3e-83  278.2   0.0    1.0  1  PF00814.20 Glycoprotease family


Domain annotation for each model (and alignments):
>> PF00814.20  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.2   0.0   4.6e-87   6.3e-83      12     267 ..      53     323 ..      45     324 .. 0.95

  Alignments for each domain:
  == domain 1    score: 278.2 bits;  conditional E-value: 4.6e-87
                 -------.-------THHHHCCHHHHHHHHHHH..S-GGG--EEE---------HHHHHHHHHHHHHHCC.T--EE---HHHHHHH---TTT..-S-EEEEE----EEEEEEETTCEEE---BSSS----HHHHHHHHTT-------..HHHHHHT--..-------B----B-----HHHHHHHH...........HHHHHHHHHHHHHHHHHHHHHHHCCC----EEEE--ETT-HHHHHHHHHHH--.---EE---GGG------HHH CS
  PF00814.20  12 elhakyG.GvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalal.dkplvgVnhleahalaarleekeefPvvllvsGghtqvylvkegryeilgetlddaagealdkvarllglpypggp..aieklakeg.kkiefprplkgldfsfsGlktavlkelek.........edlaasfqeavvdhlvekteralklpkakelvvlGGvaankrLrealeeeaee.glkliiPplkyctdnaamia 267
                 ++++++G G+ P++++ +H++++  lie+al+eagl+ +dld+I++t+gPG++ +L vG+++Ak + + + +kpl++Vnh+ +h++++r+ ++ ++Pv+l+vsGg+tqv++++++ry+i+get+d a+g++ldk+ar+l+l+++++p  +ie+lak+g k +++p++ kg+d+sfsGl t + + + k         edl++s+qe+++++lve+tera+++ + ++ +++GGv++nkrL+++++++a++ g +l++ + +yc dn+amia
  MMETSP0890-20130614|5948_1  53 TFITPPGeGFRPSETAVHHERHVSGLIEKALEEAGLQAQDLDCICYTRGPGMGACLEVGCNAAKKMVVRAgNKPLIAVNHCIGHIEMGRVATRISDPVILYVSGGNTQVIAYSSKRYRIFGETIDLAVGNCLDKFARVLQLSNDPSPgyNIEQLAKKGsKLLDLPYVTKGMDVSFSGLLTHIEQRAPKlladgsytrEDLCMSLQETIFAMLVEVTERAMAHCDRNDALLVGGVGCNKRLQAMMANMARNrGGTLCAMDANYCIDNGAMIA 323
                 67799999*******************************************************9988755389****************998889*****************99*****************************877777*********777*************************556899******************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.63
# Mc/sec: 1331.31
//
Query:       MMETSP0890-20130614|5949_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.8   0.7       0.19   11.1   0.5    1.4  1  PF03066.10 Nucleoplasmin
        1.3    8.8   7.0        3.8    7.3   4.9    1.8  1  PF14442.1  N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   2.7e-05      0.19     115     141 ..     247     273 ..     184     278 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.7e-05
                 ...----XXXXXXXXXXXXXXXXXXXX CS
  PF03066.10 115 ldeeddeedeeeeddeedddeeeeeee 141
                 ld++     ++++dd++ddd++  ee+
  MMETSP0890-20130614|5949_1 247 LDDDTGSTVSDDDDDDDDDDDDLCEEN 273
                 343444444555555555555444443 PP

>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.9   0.00056       3.8      94     117 ..     245     267 ..     236     281 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00056
   PF14442.1  94 lradddgaaasarasdddddddda 117
                 ++ ddd  ++  +++dddddddd 
  MMETSP0890-20130614|5949_1 245 ANLDDDTGST-VSDDDDDDDDDDD 267
                 4445554444.3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.88
# Mc/sec: 800.60
//
Query:       MMETSP0890-20130614|5954_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   13.0   0.0      0.077   12.9   0.0    1.1  1  PF01467.21 Cytidylyltransferase
       0.11   11.6   0.0       0.11   11.5   0.0    1.0  1  PF01115.12 F-actin capping protein, beta subunit


Domain annotation for each model (and alignments):
>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.077      79     156 ..      17      84 ..       4      85 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-05
                 .TTCEEEEEEECTTTCHHHHSTTHHHHHHHHEE..EECCCHHCCCSECGGCCCHCCSEE.EEEEECCSTTCC.H-HHHHHH CS
  PF01467.21  79 gpdvdlyliigadvleslekwraiqelleevkl..vvvsrpgddkletvldreeldkkplgiivikeppsnd.iSstkire 156
                 + ++d+ ++ g+d         ++++ le++++   ++ r+g++         +++++++ i+v++ + + + iSs+kir 
  MMETSP0890-20130614|5954_1  17 KFGTDVVFLFGSD-------HPEFSTTLEKYGFsgMCLTREGHQVP------RQMRQGSKRIHVVTTKHRYAgISSSKIRD 84 
                 5678999999999.......88899999999982235566666543......567788888888888888888******96 PP

>> PF01115.12  F-actin capping protein, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.11     103     164 ..       6      75 ..       1      83 [. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
  PF01115.12 103 eafdvyrdlyyeggvssvYlwdldeed........gfagvvllkkeekkeekksgkwdsihvfevteeas 164
                 e++  y + y + g+  v+l+  d+ +        gf+g++l ++ ++  +++++    ihv++ +++ +
  MMETSP0890-20130614|5954_1   6 EVIAHYSQEYEKFGTDVVFLFGSDHPEfsttlekyGFSGMCLTREGHQVPRQMRQGSKRIHVVTTKHRYA 75 
                 6778999999999***********9889******************9*99****99*******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 384.32
//
Query:       MMETSP0890-20130614|5947_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 235.95
//
Query:       MMETSP0890-20130614|5955_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 501.06
//
Query:       MMETSP0890-20130614|5956_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-18   65.8   0.3    5.2e-18   64.4   0.2    1.8  1  PF00226.26 DnaJ domain
    2.8e-12   46.6  31.8      1e-06   28.4   4.9    4.0  4  PF10269.4  Transmembrane Fragile-X-F protein
  ------ inclusion threshold ------
       0.01   14.8   0.1       0.01   14.8   0.0    1.7  2  PF01545.16 Cation efflux family
       0.03   12.9   1.2      0.057   12.0   0.9    1.4  1  PF10337.4  Protein of unknown function (DUF2422)
      0.094   11.9   0.1      0.094   11.9   0.1    2.6  3  PF08006.6  Protein of unknown function (DUF1700)
       0.13   11.5   2.1       0.45    9.7   0.1    2.4  2  PF13567.1  Domain of unknown function (DUF4131)
       0.16   10.4   0.0        1.8    6.9   0.0    2.2  2  PF09972.4  Predicted membrane protein (DUF2207)
        1.7    7.1   6.5       0.32    9.5   0.1    2.2  2  PF03739.9  Predicted permease YjgP/YjgQ family
        2.6    8.0   8.5       0.38   10.7   0.2    3.2  4  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.2   3.4e-21   5.2e-18       1      64 []       7      74 ..       7      74 .. 0.97

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 3.4e-21
                HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC....HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde....eeaeekfkeineAyevLsdpekraeyd 64
                +yY +Lgv+++as + Ik+aY++la+  HPDk  + +    e     f++i+eAye Lsd ++r+ yd
  MMETSP0890-20130614|5956_1  7 EYYRLLGVDRKASGQAIKRAYHNLARSQHPDKRAQRGemisESDVAEFQRIKEAYECLSDGKRRRVYD 74
                69******************************99999****999999********************8 PP

>> PF10269.4  Transmembrane Fragile-X-F protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.6   1.8e-05     0.027     128     175 ..     123     167 ..      89     183 .. 0.59
   2 !   28.4   4.9   6.6e-10     1e-06       1      94 [.     131     276 ..     131     299 .. 0.92
   3 !   12.0   1.2   6.5e-05     0.099     125     161 ..     350     387 ..     344     406 .. 0.79
   4 !   26.0   5.4   3.5e-09   5.3e-06       8      99 ..     369     510 ..     361     527 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.8e-05
   PF10269.4 128 iaatvlllLkLdkvvelswwvvfipliivlclallvvlylvilsvril 175
                 +   +l+ L  d+  ++sw  vf p++i+  l l+    +v ++ +++
  MMETSP0890-20130614|5956_1 123 LYTPILVSLNVDGATNISWGAVFLPIWIIDVLVLI---NAVAWVYEGF 167
                 34445555666777777777777777777764333...5555555444 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 6.6e-10
   PF10269.4   1 lrldgeiswswwavFaPlWalklvvllgalllias.....................................................gesrnefkamlialvlhllllafellvvikLetsnalswkivfiPlyvllvlsilalvd 94 
                 l +dg+ + sw avF P+W++ ++vl+ a+  +                                                       +   + ++  +i+l+ +ll+l f++l+vi+L   +++ +  +fiPl++  +l ++ l+ 
  MMETSP0890-20130614|5956_1 131 LNVDGATNISWGAVFLPIWIIDVLVLINAVAWVYEgfsstntassdgaedidvenerqhqgsgappnadrpayeeddepyqtdeedmaIIDDTPKLVRIIGLIRTLLILCFQILLVIHL-DTEKIALIYIFIPLFAREALALIELIP 276
                 5689*********************99998888778999***********************************************998888999999*********************.999************999999988875 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 6.5e-05
   PF10269.4 125 vfaiaatvlllLkL.dkvvelswwvvfipliivlclal 161
                 ++ i++  lllLkL +     sww +f p++i   + l
  MMETSP0890-20130614|5956_1 350 LLRISFELLLLLKLnGPARTCSWWLIFFPVWIEAAFYL 387
                 55688899999999777888999999999999777654 PP

  == domain 4    score: 26.0 bits;  conditional E-value: 3.5e-09
   PF10269.4   8 swswwavFaPlWalklvvllgalllias..........................................gesrnefkamlialvlhllllafellvvikLetsnalswkivfiPly...vllvlsilalvdafrf.......k 99 
                   sww +F+P+W+  +   l ++l ++                                             ++ + ++ l + ++ +l+ ++ +l +i+L + + +   ++f+Pl+   + + + i+a+++ fr        +
  MMETSP0890-20130614|5956_1 369 TCSWWLIFFPVWIE-AAFYLQRFLSLGRvaneienslanstfspmladqddtngnnhdkekneqlkqqavATAQANALSSLCSCICLILIAIIIVLRCIRL-RNPIVPAAVIFSPLFlivFCCYCTIAAFIWRFRSlddltfaQ 510
                 469*********54.4455556655555689999***********************************98899999999*********************.89************543477899**********955433332 PP

>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       1.5   2.2e+03     100     100 ..     140     140 ..     108     177 .. 0.43
   2 ?   14.8   0.0   6.7e-06      0.01     126     225 ..     426     531 ..     227     535 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
  PF01545.16 100 d 100
                  
  MMETSP0890-20130614|5956_1 140 S 140
                 1 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 6.7e-06
  PF01545.16 126 agrksskrssalravalhvlgdalgslgvlvaallilft......glnl......ylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalreldgvlsvhd 225
                 +++  + +++a  a+a+ +++ +l+s+++l+ +++i+++      +  +      ++ p++ ++++++  ++++     sl++L  a   +++++ + + +   ++v+++++
  MMETSP0890-20130614|5956_1 426 KEKNEQLKQQA-VATAQANALSSLCSCICLILIAIIIVLrcirlrN--PivpaavIFSPLFLIVFCCYCTIAAFIWRFRSLDDLTFAQDTEDEENHIAQSA---EEVEDIQS 531
                 33334555666.4899999**************9999996666541..15677889******************999999999999986666678888888...66666665 PP

>> PF10337.4  Protein of unknown function (DUF2422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   3.8e-05     0.057      77     179 ..     392     491 ..     375     499 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.8e-05
   PF10337.4  77 ciawavaviamkiankareqitqaelaqllieeglc..tssaslaacaqeqvfdGkyldarvsaVyavllfvfiyfvgrlraknpkfalgvIfgiIaanvfltyg 179
                  ++ + + i    an  ++     +la +  ++g    +++ ++ ++++ +  +++ l + +s ++ +l+ + i++   +r +np+   +vIf+   + vf++y 
  MMETSP0890-20130614|5956_1 392 SLGRVANEIENSLANSTFSP----MLADQDDTNGNNhdKEKNEQLKQQAVATAQANALSSLCSCICLILIAIIIVLRC-IRLRNPIVPAAVIFSPLFLIVFCCYC 491
                 55555555555555555544....666666677777655555555555566677899********9999888777766.************************96 PP

>> PF08006.6  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.9      0.31   4.7e+02     104     144 ..     109     148 ..     104     171 .. 0.65
   2 ?   -6.7   3.0         9   1.4e+04      91      97 ..     254     260 ..     226     283 .. 0.46
   3 ?   11.9   0.1   6.2e-05     0.094      64     137 ..     423     497 ..     386     507 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.31
   PF08006.6 104 illvlslliiglvlllspliLlvkgilkgfvellls.vfvsi 144
                 ++l ++++++g++ l +p+++ +++  +g+++++   vf  i
  MMETSP0890-20130614|5956_1 109 LVLFFIFCCVGFFTLYTPILVSLNV--DGATNISWGaVFLPI 148
                 5677788888888899998766543..444444433355555 PP

  == domain 2    score: -6.7 bits;  conditional E-value: 9
   PF08006.6  91 lnliiil 97 
                 + li i+
  MMETSP0890-20130614|5956_1 254 IALIYIF 260
                 2233333 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 6.2e-05
   PF08006.6  64 saiekaekkksvknilrailavlgLgllnliiilipliilill.vlslliiglvlllspliLlvkgilkgfvell 137
                 ++ ++ +++ +++ + +a + +l+     +++ili++ii++    l   i+  ++++spl+L+v  +  ++  ++
  MMETSP0890-20130614|5956_1 423 NHDKEKNEQLKQQAVATAQANALSSLCSCICLILIAIIIVLRCiRLRNPIVPAAVIFSPLFLIVFCCYCTIAAFI 497
                 4445566777788888888888888888889999888887766258888999999********998887776655 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.22   3.4e+02      42      61 ..     107     126 ..      94     152 .. 0.70
   2 ?    9.7   0.1    0.0003      0.45      17      61 ..     451     501 ..     437     548 .. 0.48

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.22
   PF13567.1  42 llllglllllaglylllrap 61 
                 + l++++++++++++ l++p
  MMETSP0890-20130614|5956_1 107 RCLVLFFIFCCVGFFTLYTP 126
                 44555555555555555555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0003
   PF13567.1  17 lllalllalllllllflkr........rkrrrlllllglllllaglylllrap 61 
                  + ++l+a++++l ++++r          ++  l+l+ +++ +  + + +r+ 
  MMETSP0890-20130614|5956_1 451 CICLILIAIIIVLRCIRLRnpivpaavIFSP--LFLIVFCCYCTIAAFIWRFR 501
                 2333333333333333333555443332222..22222222222222222222 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.086   1.3e+02     398     447 ..      97     156 ..      15     182 .. 0.62
   2 ?    6.9   0.0    0.0012       1.8     398     448 ..     433     495 ..     397     521 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.086
   PF09972.4 398 l.........gllilgilllilsfili.ifllalfaglllaalvllvivlvigliialll 447
                           ++l+l ++++ ++f+ + + +l      +++ + + +++l i++i +l+l
  MMETSP0890-20130614|5956_1  97 RkvskvgnrcRCLVLFFIFCCVGFFTLyTPILVSLNVDGATNISWGAVFLPIWIIDVLVL 156
                 044444555645555555555555544345555555555555555555555555544444 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0012
   PF09972.4 398 l.............gllilgilllilsfiliifllalfaglllaalvllvivlvigliiallll 448
                 +             +l   ++l+li+ +i+   +++l  +++ aa+++  ++l+++++  ++  
  MMETSP0890-20130614|5956_1 433 KqqavataqanalsSLCSCICLILIAIIIV-LRCIRLRNPIVPAAVIFSPLFLIVFCCYCTIAA 495
                 122233344444332333333333333333.589999999999999999999999998888773 PP

>> PF03739.9  Predicted permease YjgP/YjgQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.4      0.24   3.7e+02     305     348 ..     114     159 ..      97     165 .. 0.70
   2 ?    9.5   0.1   0.00021      0.32     257     321 ..     426     488 ..     328     496 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.24
   PF03739.9 305 lvlailiffiyyvlsslgealaengll..ppilaawlpnilflilg 348
                 ++ ++ +f++y ++ +  ++ ++++ +    +l +w++ +l li +
  MMETSP0890-20130614|5956_1 114 IFCCVGFFTLYTPILVSLNVDGATNISwgAVFLPIWIIDVLVLINA 159
                 7888999999999999999988886662222556666666666655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00021
   PF03739.9 257 alksaglkvrkyeaelhkrlalplsclilvligaplglvkprggrglr.lvlailiffiyyvlssl 321
                 + k+++lk++  +++  + l+  +sc+ l+li++  +l+     r  + +v+a +if  ++++ ++
  MMETSP0890-20130614|5956_1 426 KEKNEQLKQQAVATAQANALSSLCSCICLILIAIIIVLRC---IRLRNpIVPAAVIFSPLFLIVFC 488
                 446666779999999*******************999994...44444577777776665555554 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.23   3.4e+02      34      80 ..     202     247 ..     177     267 .. 0.64
   2 ?   10.7   0.2   0.00025      0.38      27      82 ..     416     462 ..     398     470 .. 0.46
   3 ?   -3.6   0.1       6.8     1e+04      29      39 ..     514     524 ..     506     542 .. 0.39
   4 ?   -3.0   0.3       4.4   6.7e+03      36      49 ..     562     575 ..     548     588 .. 0.49

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.23
   PF06024.7  34 enkkntksaapknditeeeskaekaqatnillisllavlcvlvllyv 80 
                 +++++++  + +++  +  +  + +    i li  l +lc  +ll +
  MMETSP0890-20130614|5956_1 202 AYEEDDEPYQTDEEDMAIID-DTPKLVRIIGLIRTLLILCFQILLVI 247
                 44444433333333222222.35666677888888888887777743 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00025
   PF06024.7  27 edennkaenkkntksaapknditeeeskaekaqatnillisllavlcvlvllyviy 82 
                 +d++n ++++k+++++ +++++         a a+ + l sl +++c++++ ++i+
  MMETSP0890-20130614|5956_1 416 QDDTNGNNHDKEKNEQLKQQAV---------ATAQANALSSLCSCICLILIAIIIV 462
                 2222222222222222222222.........2333344555555555555544443 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 6.8
   PF06024.7  29 ennkaenkknt 39 
                 +++++ +++ +
  MMETSP0890-20130614|5956_1 514 DEENHIAQSAE 524
                 22222222111 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 4.4
   PF06024.7  36 kkntksaapkndit 49 
                 ++nt++++ +n+ +
  MMETSP0890-20130614|5956_1 562 TENTEDMTTSNQDD 575
                 22332222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       925  (0.0676565); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:01.62
# Mc/sec: 921.56
//
Query:       MMETSP0890-20130614|5952_1  [L=2720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-76  254.6   0.0    1.2e-45  155.5   0.0    2.8  3  PF02010.10 REJ domain
    5.5e-06   26.2  16.4     0.0002   21.3   3.8    2.8  2  PF01825.16 Latrophilin/CL-1-like GPS domain
     0.0007   19.7   3.2      0.011   15.8   0.1    3.1  2  PF07729.7  FCD domain


Domain annotation for each model (and alignments):
>> PF02010.10  REJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   3.4e-31   1.5e-27     114     424 ..       3     311 ..       1     327 [. 0.82
   2 ?   -1.9   0.0      0.15     7e+02     217     279 ..     656     945 ..     639     959 .. 0.70
   3 !  155.5   0.0   2.6e-49   1.2e-45      10     403 ..    1026    1420 ..    1016    1451 .. 0.87

  Alignments for each domain:
  == domain 1    score: 95.8 bits;  conditional E-value: 3.4e-31
  PF02010.10 114 hs.sqltyeWlcqrsngr..egcnnplynippeasrssvltipaselkpnleytfkltvskdsrksasaeqtirvvdgepplvsiecvqncngkvnpnsrlvLrgscl..ncdkdikdvtfewsl....atllqtseceselptlk.setttgrrarnLviregklqpgksyrlslrVrdkeakkg..lAsisfkvNepPvgGrcsvfPleGveletaftvrCqgwkdkdqPLgYevsysqrrasgpyrlLyegsnnrs.ssviLPsgpsqqdykvyvmvsVydnkgarvsvnltitVkpaavnnstieellnnrtrngnelsv 424
                 +s  +lt+ W c   +++    c   ++    +a+ s +l++p s l +++ ytf +tvs  + ++++a+  +       p+vs+  +   +g+++++ +  +++ +   +  +++  +  +wsl    +  ++ + ++++l+ ++  +  +g   + Lvi++g l pg++y+++l + ++e+ ++  +As ++ +  +P++G+++v P++G +l t+f ++ ++w  +  P  Y++s+   +a+g+ + L + +      +v L  g      +v+v+v+  dn+g+ ++   +i+V p + +++  e+ l +++ ++  l  
  MMETSP0890-20130614|5952_1   3 GSaAGLTFAWNCSAITSEtqASC---DDLSSILAAASEILSFPGSALAEGT-YTFGVTVSAIDGRMSTASVELSAAGVTRPDVSLIGPI--GGLTTTSTKTTIEAKVAipSNGEETGELESTWSLvsgtLPVSLDEAASTPLTMTRiATRAEGIVHHDLVIQSGMLIPGSEYTFRLEAQYSESNSDlgFASLTIFTARLPSSGSIQVLPTSGMALVTKFELTALNWAADALPIRYRFSV--LNAEGSLSTLRKATIVPVlGGVTLEAG------EVTVIVTAIDNFGSEAQAERKINVEPLDLSSE-EEDELTITSVTDELLAE 311
                 56689*******99888855667...666666999****************.*********9988*******************98876..555555555555554444244555899999999999774445555666677777779999********************************99999**************************************99999********..999999999998876666678888888......9***************************9999.33334444444444444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.15
  PF02010.10 217 clncdkdikdvtfewslatllqtseceselp...................................................................................................................................................................................................................................tlksetttgrrarnLviregklqpgksyrlsl 279
                 c + +++++ vt+  ++ ++++t++ ++++                                                                                                                                                                                                                                    +++ +t t+ ++++L++++ k + g+s ++sl
  MMETSP0890-20130614|5952_1 656 CVATTSTTTHVTCACDVDATAETPTDYTTIDetvafavigqafihsqeptnsptlrpvpnptatpgnptrsptsgpptaspteascesirekflnelpadpiltkasfsstgaavtflfngptdqmnietgipfacsrllsfptveaaecqwtnegevyadvsaafgilpdidvelisnvlyakcpqddliyghrcecleaasasitvveppdpplvpvpiiqgptlaaacegftldtsqssggggreftwyawdvelDFSDSTPTSVENATLALDTAKARIGESSTFSL 945
                 55444455566666666555555555555556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777778888888888888888888888888888888888888788999999999999999999999999999988 PP

  == domain 3    score: 155.5 bits;  conditional E-value: 2.6e-49
  PF02010.10   10 ahkllynWsvfsvnsnqil.trvln..etteptliippstLpyG.eytflltvtilseevleatdikkvrvepspLvavIkGGtsrvigyr.snitLDGseSyDPDsdshs...sqltyeWlcqrsngr.egcnnplynippeasrssvltipaselkpnleytfkltvskdsrksasaeqtirvvdgepplvsiecvqncngkvnpnsrlvLrgscl..ncdkd.ikdvtfewsl..atllqtseceselptlk..setttgrrarnLviregklqpgksyrlslrVrdkeakkg.lAsisfkvNepPvgGrcsvfPleGveletaftvrCqgwkdkdqPLgYevsysqrrasgpyrlLyegsnnrs.ssviLPsgpsqqdykvyvmvsVydnkgarvsvnltitVkpaav 403 
                  + ++ y+W+ ++ n+ + l +++l+  +t+ ++  + p++L++G  yt+++tvt  +  ++ ++ +  + v  s +va I+GG+ +v  +   +i+  +s SyD D+ + +    +l++ W+cqr +   ++c    ++ ++e+ +s vl i+ + l +++ + + ++v+  + + +sa  +i vv+++pp vs+  + +    v+ + rlvL + c   + d + ++d+ f+ +   +++l   ++ +e+ t++    t+ ++r + Lv+ +g+l +g++y++ l ++ +e+++   Asi++ v  pP+ G  +  P+ G +let+f+++++ w  +d PL+Ye++    +++g+ + L   +++ s ++v+LP g +    +++++v   d  g+  +   +++V+p + 
  MMETSP0890-20130614|5952_1 1026 ERSVSYTWQLDEINDEGALiPTGLTstSTDPRQFKLEPYSLTAGsTYTLSVTVT-DDVLGVGSSTAAELVVIRSAVVALIDGGDRVVPFFGrVEII--ASPSYDEDVADLTgvtAGLSFYWTCQRLSAGlHDC----TSAFWEQRESEVLDINGQDLGSGV-FSIAVNVTSIDGRLSSAAVRIEVVNDDPPRVSLGAIPTR---VTVAARLVLLAECApsSLDLAvSEDLGFNSTWrvQSALAGGRGLEEWATTEthLVTSAQTRRHDLVVPSGALVSGATYTFVLEAALEEGSSRgSASITVVVARPPSAGIVNSEPQAGFALETRFQFSTSYWVAEDLPLSYEFLS--LQSNGQSSTLRGPTRQTSlAGVVLPAGTP----NISIVVVAHDTIGGEGKAARSVRVSPTNL 1420
                  67899*********99887345555789999**********8884588888888.9999999*********************9888877755666..********99988889**************99999....************************.8999999888877**********************9955...*************9644555555555554333778888888888888888744667888999*************************999988**************************************************9..***************************66....56999999999999999999999988765 PP

>> PF01825.16  Latrophilin/CL-1-like GPS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   2.2   0.00019      0.88       2      35 ..     636     671 ..     635     671 .. 0.87
   2 !   21.3   3.8   4.3e-08    0.0002       4      34 ..    1755    1786 ..    1753    1788 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00019
  PF01825.16   2 naqCvyWnetqgsWs.tdG.CrvvksdstttqClCn 35 
                 ++ Cv ++e+ g Ws + G C    s+ t+++C C+
  MMETSP0890-20130614|5952_1 636 TTVCVGFDEDLGIWSqSIGnCVATTSTTTHVTCACD 671
                 678************66677888999999******6 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 4.3e-08
  PF01825.16    4 qCvyWnetqgsWstdGCrv.vksdstttqClC 34  
                   Cv W+ +++sW +d C+   +sd  tt+C+C
  MMETSP0890-20130614|5952_1 1755 DCVVWDDSTSSWNDDYCEAlRASDGLTTTCKC 1786
                  7******************999********** PP

>> PF07729.7  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.5e-06     0.011      16      99 ..     483     566 ..     479     594 .. 0.87
   2 ?    2.7   0.3      0.03   1.4e+02      19      48 ..    2332    2361 ..    2323    2369 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-06
   PF07729.7  16 laarratdadlaelralleemeaaaaegdleefaeadlaFHralaeaagnprlaellerlrarlrrlrrlslsapgrleevlae 99 
                  a++r++d++la  + +++ m+a a  +++ +++ ad +F   l+e  +npr  e+  ++ + + r+  ++   +++ ++ l+e
  MMETSP0890-20130614|5952_1 483 SAVQRISDDQLANSQIAIDGMDAFAVVTEATDIQGADDEFEIYLYEFNRNPRATEASASVDTSVVRFKLIAVVIEEDQRRQLEE 566
                 599*********************************************************999999888877755555555544 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.03
   PF07729.7   19 rratdadlaelralleemeaaaaegdleef 48  
                  + a  ++l+el+al++em++ +++++l+++
  MMETSP0890-20130614|5952_1 2332 ADAVNQQLEELAALHDEMIRRPGRDALRSA 2361
                  455669***************999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       886  (0.064804); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.46u 0.38s 00:00:03.84 Elapsed: 00:00:01.95
# Mc/sec: 3342.61
//
Query:       MMETSP0890-20130614|5959_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.55
# Mc/sec: 962.90
//
Query:       MMETSP0890-20130614|5957_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-14   53.6   0.0    3.1e-14   53.1   0.0    1.2  1  PF00106.20 short chain dehydrogenase
  ------ inclusion threshold ------
       0.02   14.4   0.0       0.03   13.8   0.0    1.2  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   4.5e-18   3.1e-14       2     144 ..      39     186 ..      38     195 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 4.5e-18
                 EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHH..HH----SEEEEE---.TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHHHSSTT CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeir..kalgpldgvvhnagv.lddgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagvlgspg 144
                  +++TG+++glGl  A +L+++g   ++l+ r+   ++a+ +++e+  +  + tv+++ +++ +++++++ +++  k  + ld +v na+v l++ p  ++t++ +e  + ++  g +ll++l+l+     + ++++++ S++g     g
  MMETSP0890-20130614|5957_1  39 LAVVTGASSGLGLYGALELAKSGDYYVILACRN--VERAESIAQEMGFPKNSYTVLKLELGSLESVRNFVFNLKafKGPRGLDRLVCNAAVyLPKDPNPRFTEDGFEMSMGVNHLGHFLLTQLLLPdlkkVKNSRVIIVGSITGNQNTVG 186
                 589******************************..************************************9997777788887777666636699999***************************985533888888888888665544 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.3e-06      0.03       4     124 ..      41     161 ..      39     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-06
                 EE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS...--.-EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHC CS
   PF08659.5   4 LvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaee..ppl.rGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhella 124
                 +vtG+  glGl  a +La++g   ++l+ r+    e+ae+  +e+     + tv+++++ + ++v++ + +++a +  + l r v +aA  l + +  + t++ ++  +     G   L +ll 
  MMETSP0890-20130614|5957_1  41 VVTGASSGLGLYGALELAKSGDYYVILACRN---VERAESIAQEMGFPKNSYTVLKLELGSLESVRNFVFNLKAFKgpRGLdRLVCNAAVYLPKDPNPRFTEDGFEMSMGVNHLGHFLLTQLLL 161
                 8******************************...444555678888889999999999999999999999998877443452456677777778888888888888888887777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.63
# Mc/sec: 1422.60
//
Query:       MMETSP0890-20130614|5961_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-21   74.9   1.0    1.2e-20   73.5   0.1    2.0  2  PF02254.13 TrkA-N domain
  ------ inclusion threshold ------
      0.016   14.9   0.1      0.026   14.2   0.1    1.4  1  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
      0.085   11.3   0.1       0.12   10.8   0.0    1.2  1  PF05502.8  Dynactin p62 family
      0.093   12.1   0.3        2.1    7.7   0.0    2.8  3  PF00107.21 Zinc-binding dehydrogenase
       0.11   11.4   0.0       0.18   10.8   0.0    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
       0.14   12.0   0.1       0.39   10.6   0.0    1.7  2  PF13916.1  PP1-regulatory protein, Phostensin N-terminal


Domain annotation for each model (and alignments):
>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.1   5.1e-24   1.2e-20       1     109 [.      46     155 ..      46     161 .. 0.90
   2 ?   -0.6   0.1       0.5   1.1e+03      45      45 ..     209     209 ..     176     260 .. 0.61

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 5.1e-24
                 EEEE---HHHHHHHCCCHH--..EEEEES-HHHHHHHHH---EEEE--TTSHHHHHHTT-----EEEE--SSHHHHHHHHHHHCCC-TTSEEEEEESSGGGHHHHHH.-- CS
  PF02254.13   1 iiiiGlGrvGrslaeeLregekdvvvidkdeerveelreeglevvvgdatdeevLeeagieeadaviaatgddeanllavllakelnpkkkiiaraqdeenakllkk.lg 109
                 ++++G+GrvG+ ++e+L ++  d+v+ d d++++  +r+ g +v+ gd +++evL+  +i +a++v++a++d +a   +v  ++   p+  iiara d++++++l++ lg
  MMETSP0890-20130614|5961_1  46 VVVCGYGRVGKVVCELLDAKFVDYVAFDLDPKKATDARAAGKPVFFGDLAQTEVLDYFKIGDAKLVVVAVSDQKAINRIVVGLRRKYPDLDIIARATDKQHQQRLNDvLG 155
                 79*****************7768************************************************995555555666668******************977455 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.5
                 E CS
  PF02254.13  45 v 45 
                  
  MMETSP0890-20130614|5961_1 209 T 209
                 2 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.1e-05     0.026      25      67 ..      45      87 ..      32     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.1e-05
                EEEEE---------HHHHHH---EEEE--S-HHHHHHHHC--- CS
  PF00670.16 25 vavvaGyGdvGkGcaaslkalGarvivtevdPicalqaameGf 67
                 +vv+GyG vGk  ++ l a+    +  ++dP  a  a   G 
  MMETSP0890-20130614|5961_1 45 PVVVCGYGRVGKVVCELLDAKFVDYVAFDLDPKKATDARAAGK 87
                489*****************99999999****99999887775 PP

>> PF05502.8  Dynactin p62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.3e-05      0.12     442     477 ..     225     260 ..     211     274 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.3e-05
   PF05502.8 442 laakeekvaeagkvwekgrnwvsivlevvpasleak 477
                 +a+++++ +e g ++++g n +s++l+vv    +++
  MMETSP0890-20130614|5961_1 225 SATNNDQDDENGTIMQQGTNSTSVILDVVSLDNDST 260
                 56788999*********************9666633 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.13     3e+02       2      34 ..      54      86 ..      43     131 .. 0.62
   2 ?   -0.9   0.0      0.45     1e+03      45      64 ..     166     192 ..     138     202 .. 0.73
   3 ?    7.7   0.0   0.00092       2.1      19      71 ..     208     258 ..     196     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.13
                ---HHHHHHHHH--EEEEEESSHHHHHHHHH-- CS
  PF00107.21  2 vGlaavqlAkalGarviavdsseeklelakelG 34
                vG  +++l+ a     +a d +++k+  a++ G
  MMETSP0890-20130614|5961_1 54 VGKVVCELLDAKFVDYVAFDLDPKKATDARAAG 86
                566667777777777777777777777777776 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.45
                 -.......HHHHHHHHTTT--BSEEEE CS
  PF00107.21  45 d.......fvkaireltggkgvdvvie 64 
                 +       f+ ++ ++ + ++vd++ie
  MMETSP0890-20130614|5961_1 166 NsrllslpFAGSVLKALNYEDVDIIIE 192
                 445555557777778888889999998 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00092
                 EEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTH CS
  PF00107.21  19 avdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvgagat 71 
                 a+ ++ee+ +l+++lG  ++ n +d++ ++ +++ t+     v+++ v  +  
  MMETSP0890-20130614|5961_1 208 ATLIDEEQEALLEQLGLSATNNDQDDENGTIMQQGTNS--TSVILDVVSLDND 258
                 78899**********************99999999998..9999999886555 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.1e-05      0.18      35      79 ..      42      86 ..       9      98 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.1e-05
                GGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH-- CS
  PF02826.14 35 sgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelg 79
                ++  v + G+Gr+G+ v ++l a  ++ +a+d  +kk+++++++g
  MMETSP0890-20130614|5961_1 42 KKNPVVVCGYGRVGKVVCELLDAKFVDYVAFDLDPKKATDARAAG 86
                456699**************************9999877555544 PP

>> PF13916.1  PP1-regulatory protein, Phostensin N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.1   4.8e+03      64      78 ..     143     157 ..     139     161 .. 0.66
   2 ?   10.6   0.0   0.00017      0.39      17      68 ..     192     242 ..     189     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.1
   PF13916.1  64 rrqqqqaseelLeer 78 
                  +q+qq+ +++L+  
  MMETSP0890-20130614|5961_1 143 DKQHQQRLNDVLGVV 157
                 567777778888765 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00017
   PF13916.1  17 LerrrakLallpGepgpGaaePdesavLlealGPvhqnrfirlererrrqqq 68 
                  e rr+ L+l +G++++   +  e++ Lle lG    n     e+    qq+
  MMETSP0890-20130614|5961_1 192 EESRRSALGLYSGQQSATLIDE-EQEALLEQLGLSATNNDQDDENGTIMQQG 242
                 588*************999886.9*********8888876666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 931.92
//
Query:       MMETSP0890-20130614|5964_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-31  108.5   6.6    2.7e-17   62.4   1.4    2.8  2  PF00575.18 S1 RNA binding domain
    0.00042   20.0   0.0        1.3    8.8   0.0    3.3  3  PF13509.1  S1 domain
     0.0073   16.2  21.8      0.013   15.4  15.1    1.4  1  PF08432.5  Fungal protein of unknown function (DUF1742)
  ------ inclusion threshold ------
       0.13   11.9   4.2       0.96    9.1   2.0    2.3  2  PF02599.11 Global regulator protein family
       0.54    8.5  32.6       0.72    8.1  22.6    1.1  1  PF10243.4  Microtubule-binding protein MIP-T3
       0.95    8.6  19.6        1.8    7.8  13.6    1.5  1  PF07423.6  Protein of unknown function (DUF1510)
        2.2    7.2  20.8        4.2    6.3  10.6    2.1  2  PF07222.7  Proacrosin binding protein sp32
        5.2    6.4  21.6        9.3    5.5  15.0    1.4  1  PF03064.11 HSV U79 / HCMV P34
        6.9    5.1  23.6        9.9    4.6  16.4    1.2  1  PF12569.3  NMDA receptor-regulated protein 1
          7    5.8  16.7         12    5.0  11.6    1.5  1  PF03839.11 Translocation protein Sec62


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   1.4     2e-20   2.7e-17       3      74 .]      23      92 ..      21      92 .. 0.96
   2 !   47.5   0.1   9.2e-16   1.3e-12       3      61 ..      99     158 ..      98     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 2e-20
                STT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
  PF00575.18  3 ekGevvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74
                e +++v+G+V ++t++GafV+l ng +g+++ise+ + + e+ e+v+k++d v+vkv+k+d +  ri+Lsik
  MMETSP0890-20130614|5964_1 23 EMNAIVQGRVARITNFGAFVNLKNGCDGLVHISELQNGYCEKVEDVVKIDDIVRVKVIKIDGD--RISLSIK 92
                6789*********************************************************99..7999987 PP

  == domain 2    score: 47.5 bits;  conditional E-value: 9.2e-16
                 STT-EEE--EEEEETTEEEEE--..--EEEEEGGGS-CCEEEECCCCEETT----EEEEE CS
  PF00575.18   3 ekGevvkGtVtsvtkgGafVdlg.ngvegfipiseissdrvedpeevlkvgdevevkvlk 61 
                 ++G++v GtV +v+++G fV+l+  g +g+++is+++s rv++  +v+ ++++v  kvl+
  MMETSP0890-20130614|5964_1  99 RIGSIVRGTVLRVVDYGCFVELDeTGESGLVHISDLASYRVDKVRDVIDINQRVFCKVLD 158
                 589***************************************************999985 PP

>> PF13509.1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0031       4.2       4      38 ..      27      61 ..      26      79 .. 0.79
   2 !    8.8   0.0   0.00094       1.3       1      26 [.     100     125 ..     100     139 .. 0.84
   3 ?   -2.8   0.0         4   5.5e+03       6      25 ..     334     353 ..     333     358 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0031
   PF13509.1  4 intLkVlretefgffLdggengevlLpkkevpeel 38
                i++ +V r+t+fg+f++ +++ + l + +e+++++
  MMETSP0890-20130614|5964_1 27 IVQGRVARITNFGAFVNLKNGCDGLVHISELQNGY 61
                66789************999899999999877654 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00094
   PF13509.1   1 iGkintLkVlretefgffLdggenge 26 
                 iG i++ +Vlr +++g f++ +e ge
  MMETSP0890-20130614|5964_1 100 IGSIVRGTVLRVVDYGCFVELDETGE 125
                 8*****************99777555 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 4
   PF13509.1   6 tLkVlretefgffLdggeng 25 
                 ++ ++r + +g+ L+  +++
  MMETSP0890-20130614|5964_1 334 SMSISRTNHHGAQLSSYKQN 353
                 78899999999999754444 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  15.1   9.4e-06     0.013      47     151 ..     210     313 ..     206     366 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.4e-06
   PF08432.5  47 qFat..PivdaeaeeakkkkkelkeeiekvkkeyeekqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldelkprkyaLhkefy 151
                 +Fa+   +++  ++   + +k+ k + +k+kk+y++k+k+kk+k+kkk ++d+ k+kkk+kk+ k ek ++++++ek+ + +  +++   +l++ + +   L ++ y
  MMETSP0890-20130614|5964_1 210 HFAQeeNNITLDHHIDDRDRKRQKTDSKKIKKKYDRKHKKKKKKSKKKRHEDH-KKKKKHKKKHKREKADKEQDSEKEPTFEPPTKRI-RHLEN-TTQLHDLPRQHY 313
                 6666432333344444567888899999***********99998777755555.5555555555555555555455444444444432.22333.444444544444 PP

>> PF02599.11  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.0    0.0007      0.96       7      35 ..      64      92 ..      63     111 .. 0.90
   2 ?    1.3   0.0      0.19   2.6e+02       7      36 ..     141     170 ..     141     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0007
  PF02599.11  7 kvgEsIvIgddIeitvlevkggqVrlGIe 35
                kv++ + I+d ++++v++++g+++ l I+
  MMETSP0890-20130614|5964_1 64 KVEDVVKIDDIVRVKVIKIDGDRISLSIK 92
                788999********************996 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.19
  PF02599.11   7 kvgEsIvIgddIeitvlevkggqVrlGIeA 36 
                 kv + I I++ + ++vl+ +++  +l   A
  MMETSP0890-20130614|5964_1 141 KVRDVIDINQRVFCKVLDPSERGLKLSMRA 170
                 5678899***********999999998776 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  22.6   0.00053      0.72     164     318 ..     222     416 ..     183     418 .. 0.45

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00053
   PF10243.4 164 ekekererkkaserekkekkk.dsknkkkdk.ekekkkeksrksekgkeeerskdeerekeedkgkdretnrakeeeeesrksseksrrssksekkaeseveasksee..kktekeskaeaeqeakakasksktkkt........................................nskeevqr.ertslrrpsarpas 318
                 +   +r+rk++++  kk kkk d+k kkk+k +k+k  e+ +k++k+k++++++++++e++++k+++ e +++   +      ++  + ++ ++++ +     + + +   ++++e+++++++  + +a+ s  k++                                        ++ + + r +r+s+ + s rp+s
  MMETSP0890-20130614|5964_1 222 HHIDDRDRKRQKTDSKKIKKKyDRKHKKKKKkSKKKRHEDHKKKKKHKKKHKREKADKEQDSEKEPTFEPPTKRIRHL-----ENTTQLHDLPRQHYDNTRLDPPHLSddVQNFQEQSMSISRTNHHGAQLSSYKQNdhledasaqlflppslksqgtedastfppmrqdnnldhrqQQIPPNCReDRSSSPPNSRRPPS 416
                 334445555555554444444334444444335555555555555666666666666666666666655552222221.....122222222222222222222111100122222222222222222222222222223333455555555555555555555555555555555555554444046666666667766 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.6    0.0013       1.8      49     127 ..     213     290 ..     171     315 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0013
   PF07423.6  49 eeeeksedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedeketeekeesnvekeitn 127
                 +ee++ + +++ ++ + k+++ + +k+ +k+ d +++kk+++s+++ +e+++kk+++++++++e+++ke++ +++ + +
  MMETSP0890-20130614|5964_1 213 QEENNITLDHHIDDRDRKRQK-TDSKKIKKKYDRKHKKKKKKSKKKRHEDHKKKKKHKKKHKREKADKEQDSEKEPTFE 290
                 333333333444444444433.333333333345556666666666666666666555555555555555555554444 PP

>> PF07222.7  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  10.6    0.0031       4.2     145     229 ..     204     286 ..     181     295 .. 0.75
   2 ?    4.0   0.2     0.015        21     149     211 ..     333     397 ..     317     408 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0031
   PF07222.7 145 qsvtstlPiaehakvterqsfekeeerlsnnveellksslsldekekvkaakpkeeqllekkqeqleehkteekkkqeeqeeeek 229
                    t t    e+ ++t     +  +++ +++  + +k  +    k+k+k++k+k+++  +kk+++ ++hk+e++   +eq+ e++
  MMETSP0890-20130614|5964_1 204 LDATNTHFAQEENNITLDHHIDDRDRKRQKTDSKKIKKKYDRKHKKKKKKSKKKRHEDHKKKKKHKKKHKREKA--DKEQDSEKE 286
                 456677777889999*9999******************999999888888777777766666666666666655..556665552 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.015
   PF07222.7 149 stlPiaehakvterqsfekeeerlsnnveel.lksslsldekekvka.akpkeeqllekkqeqle 211
                  ++ i+ + +   + s+ k++++l+++  +l l  sl++++ e +++    ++++ l+++q+q+ 
  MMETSP0890-20130614|5964_1 333 QSMSISRTNHHGAQLSSYKQNDHLEDASAQLfLPPSLKSQGTEDASTfPPMRQDNNLDHRQQQIP 397
                 34556677777788899999999999876653789*********999545578899*****9985 PP

>> PF03064.11  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  15.0    0.0068       9.3     150     228 ..     212     301 ..     189     324 .. 0.42

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0068
  PF03064.11 150 aekvcralsrkks.dderkkksakqkekRrdedskkkkedrkkkqeekrtsdedkrsgkgdesGsggqsskstkq............rrled 228
                 a+ +     +  + dd  +k+ + + +k +++  ++k+ ++kkk+++kr++d++k+++++ +   ++ + ++  +            r le+
  MMETSP0890-20130614|5964_1 212 AQEEN-NITLDHHiDDRDRKRQKTDSKKIKKK-YDRKHKKKKKKSKKKRHEDHKKKKKHKKKHKREKADKEQDSEkeptfepptkriRHLEN 301
                 33333.44444442443333333333333333.44444555555555555555544444444433333322222212222333322344444 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  16.4    0.0073       9.9     400     461 ..     223     284 ..     201     307 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0073
   PF12569.3 400 eeeaanaelsaaerkklrkkakka.ekkaekeeaekaekeeekkaaekkakkedeetkkkdpd 461
                 + +    + ++++ kk++kk  ++ +kk++k +++++e++++kk++ kk++k++++ k++d++
  MMETSP0890-20130614|5964_1 223 HIDDRDRKRQKTDSKKIKKKYDRKhKKKKKKSKKKRHEDHKKKKKH-KKKHKREKADKEQDSE 284
                 3333444666666677766654441333333333333333333322.2222222222223322 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  11.6    0.0089        12      17      85 ..     234     297 ..     180     327 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0089
  PF03839.11  17 edekykkekdkkkaeiaetkkskkeeskekkkekakeekkdteaeevdkelkkeekkeekkkkkkkkvk 85 
                 +d+k+ k+k+ +k++ + +kkskk+  ++++++k k++kk+++ e+ dke  ++ +ke   ++  k+++
  MMETSP0890-20130614|5964_1 234 TDSKKIKKKYDRKHKKK-KKKSKKK--RHEDHKKKKKHKKKHKREKADKE--QDSEKEPTFEPPTKRIR 297
                 22222222222221111.2222222..33333333333333444444443..33333344444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2645  (0.193461); expected 273.4 (0.02)
Passed bias filter:                      624  (0.0456407); expected 273.4 (0.02)
Passed Vit filter:                       190  (0.013897); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.24u 0.41s 00:00:01.65 Elapsed: 00:00:01.19
# Mc/sec: 855.84
//
Query:       MMETSP0890-20130614|5966_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:01.15
# Mc/sec: 353.26
//
Query:       MMETSP0890-20130614|5965_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.03u 0.45s 00:00:01.48 Elapsed: 00:00:01.07
# Mc/sec: 1740.16
//
Query:       MMETSP0890-20130614|5970_1  [L=859]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0041   16.7   0.0      0.058   13.0   0.0    2.7  1  PF00017.19 SH2 domain
  ------ inclusion threshold ------
      0.028   13.3   3.0      0.059   12.2   2.1    1.4  1  PF10846.3  Protein of unknown function (DUF2722)


Domain annotation for each model (and alignments):
>> PF00017.19  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   8.5e-06     0.058       5      54 ..     663     711 ..     659     761 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.5e-06
                 S--HHHHHHHHCT.S.---EEEEE-SS---EEEEEEEEET.EEEEEEEEEE CS
  PF00017.19   5 kisreeaerlLlegkkdGtFLvReSeskpGdytlsvvddg.kvkhyriqsl 54 
                 + s + ae+ L + +++G+ ++R+S+ + G +tls+      ++h+ i+  
  MMETSP0890-20130614|5970_1 663 ANSYALAEKELAN-RPEGEAIIRPSS-QRGRLTLSWALMPeIIRHIPIEDI 711
                 5556779******.************.8********876656677766654 PP

>> PF10846.3  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.1   8.6e-06     0.059     317     412 ..     124     220 ..     115     223 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.6e-06
   PF10846.3 317 hkRrkSs.ssfevidlnsas.eilqpsikfensaiasqekeddddddddekerkkeeeedkekdsikddddkdlsedssi.ksesrqrsnvgryPhdil 412
                 h Rrk       +id+ + s    q +  + +s+ ++   +dddd+ ++++ ++++ ++d++kd+ +dd+d   + ++ +  ++++++s+ +r P++ +
  MMETSP0890-20130614|5970_1 124 HLRRKARqYLARSIDGMIQSrR--QLAELVAPSQYLEMDDDDDDDEPEKMDIDDEDLKDDEKKDHAQDDNDSLATPKELVaPKKKKKSSARKRNPQYLS 220
                 556666624578******9954..445667777788887777777777888888888999999999999888777777764456667778889999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       892  (0.0652428); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.46s 00:00:01.73 Elapsed: 00:00:01.39
# Mc/sec: 1480.91
//
Query:       MMETSP0890-20130614|5973_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.89
# Mc/sec: 794.30
//
Query:       MMETSP0890-20130614|5974_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-13   49.9   1.4    1.3e-05   25.0   0.2    2.7  2  PF00249.26 Myb-like DNA-binding domain
    8.6e-11   41.3   0.2    8.6e-11   41.3   0.2    3.1  3  PF00226.26 DnaJ domain
    8.7e-10   38.4   3.9     0.0004   20.3   0.3    3.2  2  PF13921.1  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   9.4e-09   4.3e-05       2      47 ..     392     446 ..     391     447 .. 0.92
   2 !   25.0   0.2   2.8e-09   1.3e-05       4      48 .]     476     524 ..     473     524 .. 0.96

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 9.4e-09
                 TSS-HHHHHHHHHHHHHTTS-....HHHHHHHCT.......TTS-HHHHHHHHHHH CS
  PF00249.26   2 grWTteEdellvdavkqlGgg...tWktIartmg.......kgRtlkqcksrwqky 47 
                 ++WT+eE   l++a+k+++ g   +W+ Ia ++          Rt  +c+ ++q +
  MMETSP0890-20130614|5974_1 392 KPWTEEELSMLAKAIKRFPAGarqRWEMIADHVSsqlrleiP-RTKDECIAKYQEL 446
                 68********************************99999955.9999999999975 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 2.8e-09
                 S-HHHHHHHHHHHHHTTS-......HHHHHHHCTTTS-HHHHHHHHHHHT CS
  PF00249.26   4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 
                 WT++ +++l ++ +++        +Wk+Ia+ +  g++ k+c++r+ +++
  MMETSP0890-20130614|5974_1 476 WTEQQQKQLERGLAMYAASleaneRWKLIAAQVD-GKSKKECVERYKQLR 524
                 *****************99***************.***********9986 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   1.9e-14   8.6e-11      11      64 .]       8      73 ..       4      73 .. 0.95
   2 ?   -3.3   1.8       1.6   7.1e+03      40      60 ..     251     271 ..     184     275 .. 0.68
   3 ?   -3.4   0.0       1.6   7.3e+03      38      52 ..     514     528 ..     509     529 .. 0.68

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 1.9e-14
                T--HHHHHHHHHHHHHHT-TTT--SCC............HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26 11 dasdeeIkkaYrklalkyHPDknkdde............eeaeekfkeineAyevLsdpekraeyd 64
                + +de +++aY+k  l+yHPDk ++ +             + +  f  +++A+ +Lsd+++r+ yd
  MMETSP0890-20130614|5974_1  8 GVDDEMLRRAYHKALLLYHPDKLSGTSsdatkekkkkkdDQGDAVFLAVQKAFAILSDEQTRRAYD 73
                5799*******************************9999778899********************8 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHTSHHHH CS
  PF00226.26  40 aeekfkeineAyevLsdpekr 60 
                  +++ k+ ++A + L++ ++r
  MMETSP0890-20130614|5974_1 251 DADAAKQRKAARDKLKKAKRR 271
                 334444445555555555555 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHH CS
  PF00226.26  38 eeaeekfkeineAye 52 
                 +e  e+ k++ +A +
  MMETSP0890-20130614|5974_1 514 KECVERYKQLRKAVQ 528
                 356788888888866 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   5.4e-07    0.0025       1      51 [.     394     454 ..     394     459 .. 0.88
   2 !   20.3   0.3   8.8e-08    0.0004       1      47 [.     476     527 ..     476     537 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.4e-07
   PF13921.1   1 WtdeEdeiLlklveey....gndWseIaeelg.......rRtplacqdrwknkLrpkisrap 51 
                 Wt+eE   L+k  +++    ++ W  Ia +          Rt+++c  ++++ L + ++r++
  MMETSP0890-20130614|5974_1 394 WTEEELSMLAKAIKRFpagaRQRWEMIADHVSsqlrleiPRTKDECIAKYQE-LQAAPKRTK 454
                 ***************87754679****9998668889***************.998888775 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 8.8e-08
   PF13921.1   1 WtdeEdeiLlklveey......gndWseIaeel.grRtplacqdrwknkLrpki 47 
                 Wt++ ++ L +    y      +  W++Ia +  g +++++c +r+k+ Lr+ +
  MMETSP0890-20130614|5974_1 476 WTEQQQKQLERGLAMYaasleaNERWKLIAAQVdG-KSKKECVERYKQ-LRKAV 527
                 *********8888888544442338********88.************.98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1653  (0.120904); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.38s 00:00:01.31 Elapsed: 00:00:00.95
# Mc/sec: 1359.62
//
Query:       MMETSP0890-20130614|5983_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-27   93.3   0.1    1.1e-26   92.7   0.0    1.3  1  PF02678.11 Pirin
    1.6e-08   33.7   0.1    4.5e-08   32.3   0.0    1.7  2  PF07883.6  Cupin domain
  ------ inclusion threshold ------
      0.093   12.0   0.0        0.2   10.9   0.0    1.5  1  PF05899.7  Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> PF02678.11  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   2.3e-30   1.1e-26      10     107 .]      47     150 ..      38     150 .. 0.88

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 2.3e-30
                 ----EEEEESS-BTTB--.SS----TT....EEE..-----EEE--S-EEEEEEEE--EEEEE----EEEE----EEEEE-----EEEEE---SS--EEEEEEEE CS
  PF02678.11  10 kaawlqlvdpFlfldhfg.paklsage....del..gagfppHpHrgletvtylleGeiehrDslGnkgvirpgdvqwmtAGsGivHsEmpeeeeeslhglQlWv 107
                 + +wl+++ +F+f+++ + p+++ + +    d +  ++ f +HpH+++e++ty++eG ++h+Ds Gn+++++pg +q m+AG+Gi HsE +++e ++l+++Q W+
  MMETSP0890-20130614|5983_1  47 NGNWLKSRFHFSFAEYGDgPQQFGVLRvqndDLVqpKRMFGTHPHSNMEIITYVVEGDLTHKDSRGNEETLGPGSIQFMSAGTGIRHSEGNPNE-KPLRFIQSWI 150
                 4689*********99864366666555888555598999******************************************************8.*********8 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0     1e-11   4.5e-08       5      68 ..      80     146 ..      78     150 .. 0.94
   2 ?   -2.6   0.0      0.79   3.6e+03      21      42 ..     221     242 ..     217     248 .. 0.65

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1e-11
                 E----EE-EBE-TT-EEEEEEEE--EEEE.E-TEEEEE-TT-EEEE-TT..-EBEEB--SSS-EEEE CS
   PF07883.6   5 lppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag..tpHrfrNtgdeparll 68 
                 ++p ++++ h H++ + + yV+eG ++ +   g+e +l++G + +  ag   +H  +N+ ++p+r++
  MMETSP0890-20130614|5983_1  80 VQPKRMFGTHPHSNMEIITYVVEGDLTHKdSRGNEETLGPGSIQFMSAGtgIRHSEGNPNEKPLRFI 146
                 79999************************999****************87799999*********96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.79
                 EEEEEEE--EEEEE-TEEEEE- CS
   PF07883.6  21 effyVleGegeltvdgeevele 42 
                 +++ +++G + +   +e   le
  MMETSP0890-20130614|5983_1 221 AYLLCVDGAVDISSQDEAKSLE 242
                 6778888888887555555555 PP

>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.5e-05       0.2      28      60 ..      96     129 ..      90     137 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.5e-05
                 EE.EEEE-EEEEEE----EEEE-TT-EEEE---- CS
   PF05899.7  28 tc.yileGevtvtpeggetvelgaGDlvvfpkgl 60 
                 ++ y++eG  t ++  g++ +lg+G + ++ +g+
  MMETSP0890-20130614|5983_1  96 IItYVVEGDLTHKDSRGNEETLGPGSIQFMSAGT 129
                 555****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 810.20
//
Query:       MMETSP0890-20130614|5984_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   24.2   7.3     0.0019   17.2   0.1    3.7  4  PF00036.27 EF hand
    2.3e-05   23.7   5.9       0.21   11.4   0.0    3.8  4  PF13405.1  EF-hand domain
    2.3e-05   24.3   0.6    0.00016   21.6   0.0    2.6  3  PF13499.1  EF-hand domain pair
    0.00029   20.2   0.1      0.029   13.8   0.0    3.1  3  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
       0.36   10.1   2.0          2    7.8   0.0    3.0  3  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00048       1.3       4      22 ..      53      71 ..      52      77 .. 0.87
   2 !   17.2   0.1   7.1e-07    0.0019       4      27 ..      93     116 ..      92     117 .. 0.93
   3 ?    0.4   0.1      0.16   4.4e+02       4      15 ..     286     297 ..     284     299 .. 0.81
   4 ?   -2.7   0.1       1.6   4.3e+03       9      14 ..     349     354 ..     348     356 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00048
                HHHHHHCTTTSSEBEHHHH CS
  PF00036.27  4 eaFkefDkDgdGkIsfeEf 22
                ea k+fD  gdG++++  +
  MMETSP0890-20130614|5984_1 53 EAYKLFDARGDGQVTVAQL 71
                899************9877 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 7.1e-07
                 HHHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkealk 27 
                 ++F+++D Dgd  Is eEf+e+++
  MMETSP0890-20130614|5984_1  93 KLFEVLDIDGDAVISSEEFCEVVR 116
                 79*******************986 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.16
                 HHHHHHCTTTSS CS
  PF00036.27   4 eaFkefDkDgdG 15 
                  +Fk++D  +d 
  MMETSP0890-20130614|5984_1 286 IFFKIYDATNDN 297
                 58******9996 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 1.6
                 HCTTTS CS
  PF00036.27   9 fDkDgd 14 
                 fD+D++
  MMETSP0890-20130614|5984_1 349 FDQDNS 354
                 9***98 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.7e-05      0.21       4      26 ..      53      75 ..      51      83 .. 0.87
   2 !    9.3   0.1   0.00036      0.97       4      27 ..      93     116 ..      90     124 .. 0.91
   3 ?    3.5   0.2     0.026        72       4      15 ..     286     297 ..     284     299 .. 0.82
   4 ?   -4.4   0.1         5   1.4e+04       9      14 ..     349     354 ..     348     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.7e-05
                ---GCC-------B---HHHHHH CS
   PF13405.1  4 eaFklfDkdgdGkidaeELrdaL 26
                ea+klfD  gdG+++ ++L+   
  MMETSP0890-20130614|5984_1 53 EAYKLFDARGDGQVTVAQLLFTA 75
                799**************998655 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00036
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 ++F+ +D dgd  i+ eE+  + r
  MMETSP0890-20130614|5984_1  93 KLFEVLDIDGDAVISSEEFCEVVR 116
                 89*****************99987 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.026
                 ---GCC------ CS
   PF13405.1   4 eaFklfDkdgdG 15 
                  +Fk++D ++d+
  MMETSP0890-20130614|5984_1 286 IFFKIYDATNDN 297
                 59*******997 PP

  == domain 4    score: -4.4 bits;  conditional E-value: 5
                 C----- CS
   PF13405.1   9 fDkdgd 14 
                 fD+d++
  MMETSP0890-20130614|5984_1 349 FDQDNS 354
                 899986 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.9e-08   0.00016       4      64 ..      53     113 ..      43     115 .. 0.88
   2 ?   -2.2   0.0       1.5   4.1e+03      45      55 ..     287     297 ..     272     300 .. 0.65
   3 ?   -1.2   0.0      0.77   2.1e+03      27      48 ..     346     365 ..     340     368 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.9e-08
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels..deevrevldyifkelDkngdGvlsfeEflq 64 
                 ea kl+D  gdg+++++ Ll  +++++s ++   +  +e+  ++f+ lD +gd v+s eEf++
  MMETSP0890-20130614|5984_1  53 EAYKLFDARGDGQVTVAQLLFTARKTSSAHRkrGSIFDEM--KLFEVLDIDGDAVISSEEFCE 113
                 4799***********************9999966666667..88*****************98 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.5
   PF13499.1  45 ifkelDkngdG 55 
                 +fk +D  +d 
  MMETSP0890-20130614|5984_1 287 FFKIYDATNDN 297
                 45555555554 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.77
   PF13499.1  27 khlgselsdeevrevldyifke 48 
                 +h  ++  d +++ +l+++f +
  MMETSP0890-20130614|5984_1 346 QHNFDQ--DNSSKPFLQDFFSC 365
                 444444..88889999999987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.033        91      31      43 ..      55      67 ..      52      71 .. 0.87
   2 !   13.8   0.0     1e-05     0.029      30      52 ..      94     116 ..      93     118 .. 0.92
   3 ?   -1.7   0.0      0.73     2e+03      27      42 ..     284     299 ..     272     299 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.033
   PF13833.1 31 frefDtdgdGkis 43
                +++fD+ gdG ++
  MMETSP0890-20130614|5984_1 55 YKLFDARGDGQVT 67
                689*******997 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1e-05
   PF13833.1  30 lfrefDtdgdGkisfeEFcvlle 52 
                 lf ++D+dgd  is eEFc++++
  MMETSP0890-20130614|5984_1  94 LFEVLDIDGDAVISSEEFCEVVR 116
                 899****************9986 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.73
   PF13833.1  27 vdilfrefDtdgdGki 42 
                 ++i f+  D+ +d+++
  MMETSP0890-20130614|5984_1 284 FQIFFKIYDATNDNML 299
                 7999***9*9999986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.32   8.8e+02       7      17 ..      57      67 ..      56      69 .. 0.78
   2 ?    7.8   0.0   0.00072         2       3      21 ..      93     111 ..      92     115 .. 0.91
   3 ?   -1.4   0.2      0.57   1.6e+03       4      14 ..     287     297 ..     284     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.32
                HH--S----B- CS
   PF13202.1  7 afDlNgDGkIs 17
                 fD+ gDG+++
  MMETSP0890-20130614|5984_1 57 LFDARGDGQVT 67
                57888***997 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00072
                 HHHHHH--S----B-HHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                 ++F+++D +gD  Is eE+
  MMETSP0890-20130614|5984_1  93 KLFEVLDIDGDAVISSEEF 111
                 68***************99 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.57
                 HHHHH--S--- CS
   PF13202.1   4 tFrafDlNgDG 14 
                 +F+ +D+ +D 
  MMETSP0890-20130614|5984_1 287 FFKIYDATNDN 297
                 7*****99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:00.79
# Mc/sec: 1280.08
//
Query:       MMETSP0890-20130614|5989_1  [L=1016]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-58  196.2   0.0      6e-58  195.5   0.0    1.4  1  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
    6.5e-39  133.2   0.0    1.2e-38  132.3   0.0    1.5  1  PF00551.14 Formyl transferase
    1.4e-25   89.9   0.0    5.3e-25   88.0   0.0    2.0  1  PF02769.17 AIR synthase related protein, C-terminal domain
    2.6e-25   88.3   0.4      1e-24   86.3   0.1    2.2  2  PF02843.11 Phosphoribosylglycinamide synthetase, C domain
      9e-23   80.5   0.1    2.5e-22   79.1   0.1    1.8  1  PF02844.10 Phosphoribosylglycinamide synthetase, N domain
    7.6e-15   54.8   3.4    3.4e-14   52.7   0.9    2.9  2  PF00586.19 AIR synthase related protein, N-terminal domain
      2e-07   30.8   0.0    4.2e-07   29.7   0.0    1.5  1  PF13535.1  ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.0   3.1e-61     6e-58       1     194 []      88     282 ..      88     282 .. 0.96

  Alignments for each domain:
  == domain 1    score: 195.5 bits;  conditional E-value: 3.1e-61
                 H-HHHHHHHHHHTT--B--EEEES..SHHHHHHHHHH-SS-EEEEEE---------EEE..SSHHHHHHHHHHHCTS-----TTSSEEEEE-----EEEEEEEE----EEE---BB---ECE---E-EE------EES-TTS-HHHHHHHHHHTHHHHHHHHCC--------EEE-EE--.----BBS--BS-----CH CS
  PF01071.14   1 asKsfakdllkkagiptaeyeaft..dpeeakeyieeatakalVvKadglaagKgviva..kseeealkavkeilekkkfGeagekvviEelleGeEvsvlalvdgktvkplpaaqdhkrvlegDegpnTGGmGayspapvvteellekikeeileptveglkkegikfkGvLyaglmlt.eegpkvlefnvRfgDpet 194
                 asK+++k++++++g++ta++e+f+  + +eak++i+++++++ V+Ka+glaagKgv v+   + e a++av+e+    +  ea++++viEe+l G E+s+la +dg+  + +p+aqdhkr+l gD+g nTGGmGay+p  ++t+++l++++  +++ +v +lk+eg +f G Ly+g+ml  + g  +lefn+RfgDpe+
  MMETSP0890-20130614|5989_1  88 ASKAWSKKFMQRHGLRTAHFEVFSrnEISEAKAWITHFKKDV-VIKASGLAAGKGVLVPpcGDFEAACAAVDELAG--QPDEASDEIVIEERLCGPEMSLLAWCDGEFAVCMPPAQDHKRALFGDRGKNTGGMGAYAPSCAATPAQLNEARR-MMQTAVSALKEEGRPFIGCLYGGFMLDpQLGVSLLEFNARFGDPEA 282
                 79*********************854689***********99.***************766899*********986..7789*******************************************************************998.9**************************7778*************97 PP

>> PF00551.14  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   6.1e-42   1.2e-38       2     180 ..     417     604 ..     416     605 .. 0.89

  Alignments for each domain:
  == domain 1    score: 132.3 bits;  conditional E-value: 6.1e-42
                 EEEEEE-----HHHHHHHHHHCTS-EE-EEEEEES-TT----HHHHHHH-EEEEB-GCG.....SCSHHHCHHHHHHHHHCG--SEEEES---S---HHHHCCT---EEEEESS-TTTTB-...--HHHHHHH----EE-EEEEE--SS----EEEEEEEEE--T.T--HHHHHHHCCCCHHHHHHHH CS
  PF00551.14   2 kivvlisgtgsnlqalldalrkgnleaeivlvvtnkdkaaglekaeqasiptevfeekk.....ltprsqseselakslaelkadlivlagygkllpkellqafplkilniHpSlLPrfrG...aaaiqraleaGdketGvtvhfvdeelDtGpilaqkkvevia.edtseelenrvaeaehkalvea 180
                 k+ vl+s  g+ lq +lda+ + + + eiv+v +nk++a  lek ++a +p   f           +r+++e+ + + l++++++ ++l+g++++l++++++++++++ln+HpSlLP + G   ++++ ++l  G++e+G+tvhfv++++D G+i+aq+ ++v+    + e+l++ v+ +e   l++a
  MMETSP0890-20130614|5989_1 417 KVGVLGSTRGTSLQPILDAAAQPDCFFEIVSVLSNKKDALILEKGRNARVPDVGFISCLtaqnkKMSRAEYEEIISERLENARVECVLLVGWMRILTSTFVKRWQGRCLNVHPSLLPDYAGgmdLEVHAAVLKDGQRESGCTVHFVTDQVDGGEIVAQRICPVLSsYTKPEQLKATVQALEGPCLLDA 604
                 7889**************************************9999998886655443333333445568999999********************************************98777999*************************************666779******99998888776 PP

>> PF02769.17  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   2.7e-28   5.3e-25       2     141 ..     823     993 ..     822    1001 .. 0.93

  Alignments for each domain:
  == domain 1    score: 88.0 bits;  conditional E-value: 2.7e-28
                 SSEEEEEE-----TT-HHHHHHHHHHHCT-GT......................B---CCCH.HHHHHHHHHHHH..HT--SEEEE------CCCHHHHHHT---EEEEEGG....GSHHHHHHH......-HHHHHHCS-SS-EEEEEEGGGH.HHHHHHHHHTT-GGEEEEEE CS
  PF02769.17   2 pGdvliltgslglggsgtslkrkllessglpl......................qlgdlllektliyvvqalaae..kglvkaahDitgGGLlgalaemafasgvgaeidld....evplfeele......lalemlfsensGrllvvvppeda.eavlalleeeglheaaviGe 141
                 pGdvli+++s+g++ +g+sl+rkl+ +   ++                       l+d ll +t++y++++++ +  ++ ++aa++itgGGLl++l+++++++ + a i+ +     +plf +l+       + +ml+++n+G++lv+v+++ + + +l +l++++    + iG 
  MMETSP0890-20130614|5989_1 823 PGDVLIGIPSSGIHANGFSLVRKLIDTRLSEKqnalskpassffqvqakqnenkSLADILLAPTKLYAAPIAVLSssSDSLLAAAHITGGGLLENLPRVLPDN-LNAHIHKPtilpFPPLFQWLQslagelPDKDMLRTFNCGIGLVLVVAAAHaDTALIKLKQYQ---PKRIGI 993
                 9*********************9988776655999******************55***********************************************8.*******************************************99998888********996...577775 PP

>> PF02843.11  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.8   3.5e+03      56      81 ..     224     249 ..     217     252 .. 0.84
   2 !   86.3   0.1   5.4e-28     1e-24       2      91 ..     318     410 ..     317     412 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.8
  PF02843.11  56 vvaqgesleeArekayeavdrirfeg 81 
                 + a+ ++l+eAr+ +++av++++ eg
  MMETSP0890-20130614|5989_1 224 CAATPAQLNEARRMMQTAVSALKEEG 249
                 5678899**********999998776 PP

  == domain 2    score: 86.3 bits;  conditional E-value: 5.4e-28
  PF02843.11   2 avgvvlaskGYPesyekgaeie..elaeeeegvkvfhagtsee.dgklvtsGGRvltvvaqgesleeArekayeavdrirfegatyRsDIGtk 91 
                 a++vvlaskGYP+sy kg+ i+  ++a + +g+ +fhagt+ + +++l+tsGGRv++++a +++l+ A ++ay+a+  i+f+g++yR D+G++
  MMETSP0890-20130614|5989_1 318 AATVVLASKGYPGSYAKGKLISglAQALSVPGASIFHAGTNLKqNKELITSGGRVVACTAVAAELKGALRAAYAAATCINFDGVFYRGDVGRT 410
                 789*******************9877999************76599*********************************************86 PP

>> PF02844.10  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   1.3e-25   2.5e-22      18     100 .]       2      87 ..       1      87 [. 0.94

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 1.3e-25
                 HH..HH---EEEE-------TT---B......------HHHHTS-SS..-EE----GGGT--------TT....B----HHHHTT- CS
  PF02844.10  18 klaqspkvekvyvapgnagiaelaekvei...kaediealaefakeekidlvvvGpeapLvaGlvdaleeagikvfGPskaaArlE 100
                 +l++s++v  +yv+pgn+g+a + +  +i   +++d +++a+fa e++  lvv+GpeapLvaG++da+++ gi+vfGPsk+aA++E
  MMETSP0890-20130614|5989_1   2 ALRKSSQVGVIYVLPGNGGTALMDQVENIlqvSPTDGAHVAKFALEKEAALVVIGPEAPLVAGVSDAVRAVGIPVFGPSKEAAEIE 87 
                 6899****************999888655556*****************************************************9 PP

>> PF00586.19  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.35   6.8e+02      76      93 ..      61      78 ..      19      78 .. 0.84
   2 !   52.7   0.9   1.7e-17   3.4e-14       2      96 .]     676     789 ..     675     789 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.35
                HH---HHHHHHCT-EE-- CS
  PF00586.19 76 iveGladaanefgvplvg 93
                 v+G++da +++g+p+ g
  MMETSP0890-20130614|5989_1 61 LVAGVSDAVRAVGIPVFG 78
                578***********9976 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 1.7e-17
                 --B--EEGG............-SEEE-BEEEEE--CCCHH........T.-TTT---HHHHHHHHHHHC------EEEEEEEETTTSBHHHHHHHH---HHHHHHCT-EE----E CS
  PF00586.19   2 ddaavielg............kdeelvvttdkvethnhpt........aidpydgaatavagnlrDiaamGAkplalldglalsnlldpealeeiveGladaanefgvplvgGdt 96 
                 +++av++l+            ++  lv+ td+v+t+++++        +   ++++ ++va++++D+a++GA+pl++ld++a+++ ldp+  +++v+G+a +++e g++lvgG+t
  MMETSP0890-20130614|5989_1 676 GFGAVFDLSaagfgaastpseDQVLLVSGTDGVGTKLKLAaearlvtgFSYDQNLGVDLVAMCANDVATTGAQPLFFLDYYATGK-LDPSRCADVVAGVALGCKESGCALVGGET 789
                 56778888788888888888677778999*********9999998887445566******************************8.599************************98 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.2e-10   4.2e-07       5     180 ..      90     278 ..      88     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2.2e-10
   PF13535.1   5 Kllmrellaeaglpvprfalvdsee...dleaaaeeigfpvvlKPadgagslgvrr..vddaaeleaalealaaeveldegeflvEeyieGdeysvdglvldgelvflgisryletsppdfsdg.........aelgsvspseepleealrelaerllkalglk.ngvfHlEfkltpd.GrlvliEinaRpg 180
                 K+  +++++++gl+++ +++v s++   +++a++ +++  vv+K +  a+ +gv +  + d + + aa+++la+  ++  +e+++Ee + G+e+s+  +++dge  +++   +++++++ + +g         a+  +++p + ++++++++ a  +lk+ g    g+    f+l+p+ G + l+E naR+g
  MMETSP0890-20130614|5989_1  90 KAWSKKFMQRHGLRTA-HFEVFSRNeisEAKAWITHFKKDVVIKASGLAAGKGVLVppCGDFEAACAAVDELAGQPDEASDEIVIEERLCGPEMSLL-AWCDGEFAVCMPPAQDHKRALFGDRGkntggmgayAPSCAATPAQLNEARRMMQTAVSALKEEGRPfIGCLYGGFMLDPQlG-VSLLEFNARFG 278
                 6666899999999988.5555555500055555555558***************775565666666666666666559******************9.788999999999999999998877778785555444444444445544455555555555555544899***********99.9********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.38u 0.41s 00:00:01.78 Elapsed: 00:00:01.04
# Mc/sec: 2341.06
//
Query:       MMETSP0890-20130614|5986_1  [L=909]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1184  (0.0866004); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.30u 0.40s 00:00:02.70 Elapsed: 00:00:01.34
# Mc/sec: 1625.59
//
Query:       MMETSP0890-20130614|5990_1  [L=884]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-92  307.0   0.0    7.2e-92  306.2   0.0    1.3  1  PF06434.8  Aconitate hydratase 2 N-terminus
    1.9e-57  193.2   0.1    3.6e-57  192.3   0.0    1.5  1  PF11791.3  Aconitate B N-terminal domain
    3.2e-25   88.4   0.2    6.3e-13   47.8   0.1    2.7  2  PF00330.15 Aconitase family (aconitate hydratase)
       0.01   15.5   0.0      0.022   14.5   0.0    1.5  1  PF02801.17 Beta-ketoacyl synthase, C-terminal domain
  ------ inclusion threshold ------
       0.15   10.1   0.0       0.27    9.2   0.0    1.3  1  PF05592.6  Bacterial alpha-L-rhamnosidase


Domain annotation for each model (and alignments):
>> PF06434.8  Aconitate hydratase 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.2   0.0   2.6e-95   7.2e-92       2     200 ..     187     390 ..     186     393 .. 0.96

  Alignments for each domain:
  == domain 1    score: 306.2 bits;  conditional E-value: 2.6e-95
   PF06434.8   2 vvfkveGetntDdlsPaseAfsRsDiplHakamlkkraeg...sletikelkkkgrevvyvgdvvGtGssRksainsvlWhlgedipyvPnkrtggiviGgkiaPiFfntaedsGalpieadvskletGdvidikpyegkivkesge..viakfelkpntlldevraggripliiGrgltakarealgleaeevfakpeepsee 200
                 +vfkv+GetntDdlsPa +A+sR+DiplHa amlk+ +eg   + ++i+elk+kg +++yvgdvvGtGssRksa+ns+lW++g+dipyvPnkr ggi+iGgkiaPiFfnt++d+Galp+e+dv+++e+Gdvidi+pyeg  +k++++  v+a+f++k +++ devraggripliiGrglt++are+l++ea+++f+ p  p+++
  MMETSP0890-20130614|5990_1 187 TVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNPREGitdAPKQIAELKEKGFPLAYVGDVVGTGSSRKSATNSILWYMGHDIPYVPNKRGGGICIGGKIAPIFFNTMQDAGALPLEMDVTQMEMGDVIDIYPYEGLATKHNEKstVLAEFQVKNQVIFDEVRAGGRIPLIIGRGLTNRARETLKMEATDIFRLPAIPQSQ 390
                 8************************************999777789**********************************************************************************************9995555559***********************************************9988876 PP

>> PF11791.3  Aconitate B N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   1.3e-60   3.6e-57       1     154 []      22     174 ..      22     174 .. 0.98

  Alignments for each domain:
  == domain 1    score: 192.3 bits;  conditional E-value: 1.3e-60
   PF11791.3   1 eYrkhveeRaalgipplpldaeqtaelvellknppae.eeeflldLlanrvppGvdeaakvKaefLkeiikgelkskliskeeAvelLgtmlGGynvevLiellksedeelakaaaeaLkktllvydafedvlelakknklAkevleswaeaewF 154
                 eY++h++eR a+g+ p+plda+qt++l+e lk+++++   e+ll+ +++r+ppGvdeaa+vKa+fL++i+k+e++s+lis++eA +lLgtm+GGynv++Li++l  +dee+ + a++aL+ktllv+daf dv+e++k+   Ak+v+eswa+aewF
  MMETSP0890-20130614|5990_1  22 EYEAHTAERLAEGLVPKPLDAAQTSKLIEELKKSKSDdPPEYLLKAFSERIPPGVDEAAYVKASFLTAILKNEASSPLISRIEAAKLLGTMQGGYNVTPLIDAL--DDEEVGEVAVDALSKTLLVFDAFFDVEEKMKTSINAKRVMESWANAEWF 174
                 7*******************************999884689***************************************************************..************************************************9 PP

>> PF00330.15  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.2e-13   5.9e-10     102     305 ..     484     709 ..     474     712 .. 0.74
   2 !   47.8   0.1   2.3e-16   6.3e-13     338     465 .]     711     830 ..     706     830 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.2e-13
                 ----.--HHHHHHHH.T------EE---TTTT--------B------HHHHHH----EEEE---EE-EEEE--------HHHHHHHH......------------EEEEE-.....---TTS-----HHHHH--------EEE----HH.HHHHHHH-.........--HHHHHHHHHH...GG.......GGS-------SS--EEETTT-.--EEB---STT--EEGGG-- CS
  PF00330.15 102 kpgstGIvHqivlEngltlpgltlvgtDSHTatagglGalafGvGgseaedvlagqplelkkpkvlgikltGklkegitakDlilkv......iglltvkggtgkvvEflG.....egidslslegraticNmaiEiGAtaglfpvdee.tlkYlkat.........graekaeeldeavakak.......tlkadkdakydkvveldlsdv.epsvtgpttPddavslselv 305
                 +pg+ GI+H       + +p ++  g+DSHT     lG ++f  G+  +  + a+  + l +p+++ ++++G +++git +Dl+ ++       glltv+   gk   f+G     eg+++l +e+   ++  ++E  A   ++++d+e  ++Yl+           +   +++++++ va+++        ++adkdaky ++++++l+++ ep +  p  Pdda  lse++
  MMETSP0890-20130614|5990_1 484 NPGD-GIIHSWL-NR-MLIPDTVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAATSVMPLDMPESVLVRFSGTMQPGITLRDLVHAIpyaaiqRGLLTVEK-RGKKNIFSGrvleiEGLSQLKCEQAFELSDASAERSAAGCTIKLDKEpIIEYLNSNivmlkwmiaNGYGDTRTIERRVARMQewlenpvLMEADKDAKYAEIIDINLDEItEPILCAPNDPDDARTLSEVA 709
                 5555.****965.44.688999999******986..54.79999999999999*******************************99833332223444432.23333355544444799***************************987467888754221111111112233445555554442222222799*****************956999*********9999875 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 2.3e-16
                 -SEEE--B--CCC-STTT---HHHHHHHHHT-----SS---B----HHHHHHHHH---HHHHHH----B--S--------B---SS-----EEEEESSS-------SS-TTEEEE--HHHHHHHHH-- CS
  PF00330.15 338 lkvdvalIgSCTNssiedlrraasivkkkaakklkpkvkalvvPGSevvkatleregldkifkeaGfellengCstCigqndrpDqlkeeketivsssNRNFegRqdanvrthflaSPalvaAaaiaG 465
                 +++d ++IgSC  + i   r+a +++++   ++ +  ++  + P  ++  a+l +eg+  +f ++G++   +gCs C+g++ r    ++ k t+vs+s RNF  R ++ ++   laS +l+a  +i G
  MMETSP0890-20130614|5990_1 711 TNIDEVFIGSCM-TNIGHFRAAGKLLANM--QEGAIPTRLWICPPTKMDAAQLIEEGYYATFGKIGARTEMPGCSLCMGNQARV---QD-KSTVVSTSTRNFPNRLGKGANVF-LASAELAAVSSILG 830
                 6899*******6.6799**********97..6777778999***************************************9433...33.5679*************998775.********999987 PP

>> PF02801.17  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.9e-06     0.022      58     112 ..     697     743 ..     694     749 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.9e-06
                 --HHHHHHHHHH--...TT..CEEE-GGGT----------HHHHHHHHHHH---B CS
  PF02801.17  58 gDpiEaealkavfgekarkqplavgSvKsniGHleaAaGvaelikvvlalrhgvi 112
                 +Dp  a+ l++v g++ +  ++++gS+ +niGH  aA       k++  +++g i
  MMETSP0890-20130614|5990_1 697 NDPDDARTLSEVAGTNID--EVFIGSCMTNIGHFRAAG------KLLANMQEGAI 743
                 8*************9884..5*************9996......55555555555 PP

>> PF05592.6  Bacterial alpha-L-rhamnosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   9.9e-05      0.27     208     246 ..     634     672 ..     630     713 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTB-- CS
   PF05592.6 208 aivivpwelyetygDekvlkkqYesmkryldylkersed 246
                  iv++ w++ + ygD+++++++ + m+++l+     + d
  MMETSP0890-20130614|5990_1 634 NIVMLKWMIANGYGDTRTIERRVARMQEWLENPVLMEAD 672
                 5899**************************975544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.96
# Mc/sec: 2206.65
//
Query:       MMETSP0890-20130614|5993_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-17   61.2   0.0    2.1e-16   59.8   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
    1.7e-15   56.7   0.1    4.4e-15   55.4   0.1    1.8  1  PF13167.1  GTP-binding GTPase N-terminal
      6e-07   28.9   0.0      0.002   17.5   0.0    2.4  2  PF00009.22 Elongation factor Tu GTP binding domain
    2.2e-06   26.9   0.4      0.057   12.5   0.0    2.6  2  PF02421.13 Ferrous iron transport protein B
    0.00021   21.0   0.0      0.015   15.0   0.0    2.9  2  PF00350.18 Dynamin family
     0.0037   17.3   4.2     0.0037   17.3   2.9    3.8  3  PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
     0.0065   16.8   0.0      0.023   15.0   0.0    2.0  1  PF08477.8  Miro-like protein
     0.0091   15.1   0.2          2    7.4   0.1    2.6  2  PF00025.16 ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.044   13.1   0.0        3.1    7.1   0.0    2.7  3  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.049   12.9   1.1        1.1    8.4   0.0    3.0  3  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.056   13.7   0.1      0.056   13.7   0.1    3.3  3  PF13191.1  AAA ATPase domain
      0.056   13.0   0.0       0.16   11.5   0.0    1.8  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.12   12.6   5.1       0.48   10.6   0.7    3.1  3  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.9e-19   2.1e-16       2     114 .]     439     566 ..     438     566 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 1.9e-19
                 EEEE--TT---HHHHHHHH........CSTCTEETS-TT-SSSESEEEEETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS....HHHHHHHHHHHHHH.TCCCEEEEEEC CS
  PF01926.18   2 vaivGrpNvGKStLinaLt........gekaakvsdypgtTrditenevkkek...iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa....vlkeadkellnele.akkplilvlnk 114
                 +a+vG++N+GK++L+naL+        +e++    d+ + T+d+t+++++  +   + ++Dt G++++ + +  i +++ +le++++a +l++vvdas+    ++ +a+++++++l   ++p i +lnk
  MMETSP0890-20130614|5993_1 439 IALVGYTNAGKTSLLNALVdataaarsDEQQLYADDKLFATLDPTTRRIILPRgrvCKFTDTVGFLQKLPTRL-IASFRATLEEINDACLLIHVVDASSdlakRHVDAVNAIISQLGaSDIPQIRCLNK 566
                 89****************9443333222346669999*******88777444444557********9988888.889*******************666443322336666666664477888888887 PP

>> PF13167.1  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   4.2e-18   4.4e-15       2      94 ..     236     336 ..     235     337 .. 0.87

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 4.2e-18
   PF13167.1   2 edfnfestleelkalsetcqlevveqitqnkdrvdekyyvGkGkleeikefveledidvvvvndelttaqsks.lndaldv.......kiidrtqlileif 94 
                  d+  +++leel  l+et++l v ++  q  +  + ++ vGkGkleei + +  ++ d ++ +del  aq ++ l + +++       +i+drtql+l+if
  MMETSP0890-20130614|5993_1 236 ADWSVHDSLEELAKLCETARLRVCGRTYQRLESANGQTMVGKGKLEEIATAIIENEADAIIFDDELNLAQQRNiLSELINIgnipastQILDRTQLVLQIF 336
                 6888999*******************************************9999**************9988625565554333444489**********9 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00067      0.71       3      36 ..     436     469 ..     434     501 .. 0.77
   2 !   17.5   0.0   1.9e-06     0.002      98     186 ..     529     617 ..     511     619 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00067
                 EEEEEEEESTT---HHHHHHHHHHCCCCEHHHHH CS
  PF00009.22   3 irnigiighvDhGKtTltdallykagaiskrgee 36 
                 i  i+++g +++GKt+l++al+ +++a ++++++
  MMETSP0890-20130614|5993_1 436 IPLIALVGYTNAGKTSLLNALVDATAAARSDEQQ 469
                 678999****************888776554443 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.9e-06
                 EEEEETTS-....S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHS CS
  PF00009.22  98 vlvvdaveG....vepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivell 186
                 + vvda+ +         + ++ ++ + +++ i ++NK+Dr e++l    ++ + +    +le g     ++++Sa +g+gi +Lle+i + l
  MMETSP0890-20130614|5993_1 529 IHVVDASSDlakrHVDAVNAIISQLGASDIPQIRCLNKLDRYEENLAASNDNDHVDP--AALEIG--ARVIARTSATSGDGIHELLEQIEDAL 617
                 4567777665444445567788899999999**************999888777333..333333..45799*****************9876 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.4e-05     0.057       3      24 ..     439     460 ..     437     463 .. 0.91
   2 !   11.8   0.0   8.5e-05     0.089      81     165 ..     527     622 ..     515     642 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.4e-05
                 EEEE--TT---HHHHHHH---- CS
  PF02421.13   3 valvGnpnvGKttlfnaltgak 24 
                 +alvG  n+GKt+l+nal +a+
  MMETSP0890-20130614|5993_1 439 IALVGYTNAGKTSLLNALVDAT 460
                 89****************9875 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 8.5e-05
                 EEEEEEEGGG..HHHHH....HHHHHHHHTT-SEEEEEETHHHHHC-......--EB-HHHHHHH----EE.EEBCCGTB--HHHHHHHHHHCTCG-X CS
  PF02421.13  81 viinvvDasn..lernL....yLtlqllelgvpvvvalnmiDeaekk......gikidlkkLselLgvpvv.ktvarkkkgieelleaiievaekeek 165
                 ++i+vvDas+   +r++     ++ ql   ++p + +ln++D  e++      + ++d ++L  ++g +v+ +t+a++++gi+elle+i ++ ++ ++
  MMETSP0890-20130614|5993_1 527 LLIHVVDASSdlAKRHVdavnAIISQLGASDIPQIRCLNKLDRYEENlaasndNDHVDPAAL--EIGARVIaRTSATSGDGIHELLEQIEDALSSMNE 622
                 578888886433456553333578999999************98765211111445555555..58888873699**************887776544 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-05     0.015       1      26 [.     439     464 ..     439     468 .. 0.87
   2 ?    2.6   0.0     0.088        92     119     148 ..     511     544 ..     479     558 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.4e-05
                 EEEE--TT---HHHHHHH-------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilpr 26 
                 ia+vG  +aGK+SllnaL+ +    r
  MMETSP0890-20130614|5993_1 439 IALVGYTNAGKTSLLNALVDATAAAR 464
                 89*****************8876655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.088
                 -....HHHHHHHSTTEEEEEEEETTS-STT-SHH CS
  PF00350.18 119 q....elveeyikkadiilavtdanhdlstseal 148
                        + e i++a+++++v+da++dl++   +
  MMETSP0890-20130614|5993_1 511 LiasfRATLEEINDACLLIHVVDASSDLAKRHVD 544
                 246667889999****************987665 PP

>> PF08028.6  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.9   3.5e-06    0.0037      20      87 ..      16      81 ..      13      88 .. 0.89
   2 ?    1.5   1.8      0.28     3e+02      29      63 ..     138     172 ..     123     200 .. 0.67
   3 ?    3.5   0.2     0.069        72      14      50 ..     332     367 ..     328     374 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.5e-06
                HHHTT-B-S----B----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH CS
   PF08028.6 20 erarervraaggaklaedpatqlrlAeaaaeldaAralleraaerlealadrgaevtpeeraearrda 87
                +r r+r ++ + ++ + +p+   +++ a+a+ +aAra+le+  +++ea ++r ++ t+ era+arr++
  MMETSP0890-20130614|5993_1 16 SRRRGRSQDRNDEPSSLEPTSAKNVGSAKAAARAARAALENDSSQMEA-VKRETS-TARERATARRKK 81
                5778999999***********************************776.666665.89*******997 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.28
                 ----B----HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08028.6  29 aggaklaedpatqlrlAeaaaeldaAralleraae 63 
                   g ++ae++ +  +lA aaa+++  +++  + ++
  MMETSP0890-20130614|5993_1 138 LRGVAAAESVSAAAELAAAAAAVEDEALITAAGFS 172
                 34778888888888888888888776666555444 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.069
                 HHHHHHHHHTT-B-S----B----HHHHHHHHHHHHH CS
   PF08028.6  14 alaafierarervraaggaklaedpatqlrlAeaaae 50 
                 +l+ f+era++r   +++ +la +++++ rlA +++ 
  MMETSP0890-20130614|5993_1 332 VLQIFSERAKTREA-KTQVALARAEYMLPRLATFMTT 367
                 58899********9.*****************98875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-05     0.023       2     119 .]     439     568 ..     439     568 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-05
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel..................lelwdlggreelkkehell.lkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 +++vG +++GK+sll++lv  +       +  +++ +a+++l++  d                     + l+ l  r ++++   l  +++a   + v+d +++    +v+++ a +++l +  + ip i + nklD
  MMETSP0890-20130614|5993_1 439 IALVGYTNAGKTSLLNALVDATAA----ARSDEQQLYADDKLFATLDPTTrriilprgrvckftdtvgF-LQKLPTRLIASFRATLEeINDACLLIHVVDASSDLAKRHVDAVNAIISQLGA--SDIPQIRCLNKLD 568
                 689****************99999....33333333333444444443333445666667444444433.4455555666665555578999999999999999999999999888888874..6799999999987 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        12      17      37 ..     439     459 ..     423     466 .. 0.79
   2 !    7.4   0.1    0.0019         2      85     173 ..     528     615 ..     519     617 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.011
                 EEEE--TT---HHHHHHHHHS CS
  PF00025.16  17 illlGLDnaGKtTilkklkle 37 
                 i l+G  naGKt +l+ l + 
  MMETSP0890-20130614|5993_1 439 IALVGYTNAGKTSLLNALVDA 459
                 6689************99765 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0019
                 EEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTS.TT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHHH CS
  PF00025.16  85 vifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDl.pealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 +i+vvD++  +  +   + ++a++++   ++++ +   NK D  +e l +++ +++++   l+      i+ +sa++g+g++e le++ +
  MMETSP0890-20130614|5993_1 528 LIHVVDASS-DLAKRHVDAVNAIISQLGASDIPQIRCLNKLDRyEENLAASNDNDHVDPAALE-IGARVIARTSATSGDGIHELLEQIED 615
                 799999865.34556667789999999999999999******724567788888889999999.6677899**************99876 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0029       3.1       4      25 ..     439     460 ..     437     478 .. 0.82
   2 ?   -2.4   0.0       2.5   2.6e+03     100     131 ..     537     566 ..     528     571 .. 0.79
   3 ?    2.6   0.0     0.075        79     116     142 ..     588     614 ..     566     615 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0029
   PF10662.4   4 illiGkvgaGKTtLtqalkgee 25 
                 i l+G ++aGKT+L +al + +
  MMETSP0890-20130614|5993_1 439 IALVGYTNAGKTSLLNALVDAT 460
                 679*************998765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.5
   PF10662.4 100 dlaedeenielveelLkaaGaekifevsavek 131
                 dla  + ++++v+  +++ Ga+ i ++  ++k
  MMETSP0890-20130614|5993_1 537 DLA--KRHVDAVNAIISQLGASDIPQIRCLNK 566
                 555..788999999999***999988877765 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.075
   PF10662.4 116 kaaGaekifevsavekegieellkyle 142
                  + Ga+ i ++sa++ +gi+ell+ +e
  MMETSP0890-20130614|5993_1 588 LEIGARVIARTSATSGDGIHELLEQIE 614
                 5689******************99886 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.26   2.8e+02      27      63 ..     282     320 ..     273     343 .. 0.72
   2 ?    8.4   0.0    0.0011       1.1       2      24 ..     438     459 ..     437     501 .. 0.75
   3 ?   -0.1   0.0      0.47   4.9e+02     104     157 ..     514     573 ..     495     583 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.26
                 -S-EEEEES-----HCCCCCHHT-.S-.EEEE.----EC CS
  PF02492.14  27 glkiaVivndfgetkiDaellret.gveivel.nnGciC 63 
                 +  +a+i+n+   +  D el  ++  + + el n G+i+
  MMETSP0890-20130614|5993_1 282 EIATAIIENEADAIIFDDELNLAQqRNILSELiNIGNIP 320
                 5678*********99999986555133344441335555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0011
                 EEEEE-------HHHHHHHHCHS CS
  PF02492.14   2 vtvltGflGsGKTtLlekllekn 24 
                  + l+G+  +GKT+Ll++l++  
  MMETSP0890-20130614|5993_1 438 LIALVGYTNAGKTSLLNALVD-A 459
                 6789****************5.2 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.47
                 H.SHHHHHHEEE-EEEEEEETTTH..CHHHHHHHHHHHHHCT-SE...EEEE-CCCTTTT CS
  PF02492.14 104 t.eeelksdlgldavvtvvdvknl..tegedkpekledqlaaAdl...ivlnKiDlldae 157
                 +   +l++  ++  ++ vvd+++   +++ d  + + +ql a+d+     lnK D  +++
  MMETSP0890-20130614|5993_1 514 SfRATLEEINDACLLIHVVDASSDlaKRHVDAVNAIISQLGASDIpqiRCLNKLDRYEEN 573
                 246667777777788999999665677788889999999999986322478888887776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       9.4   9.9e+03      91     114 ..      41      60 ..      31      84 .. 0.46
   2 ?   -2.2   2.4       4.1   4.3e+03      75     129 ..     280     343 ..     117     352 .. 0.56
   3 ?   13.7   0.1   5.3e-05     0.056      18      66 ..     427     482 ..     403     564 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 9.4
   PF13191.1  91 ggwreallaalgalipelegiigl 114
                 g++++a++aa +a    le   ++
  MMETSP0890-20130614|5993_1  41 GSAKAAARAARAA----LENDSSQ 60 
                 4444444444444....2222222 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.1
   PF13191.1  75 lrellrqlltelaaelggwreallaalga.........lipelegiiglqalvalldaalartr 129
                 l+e++ +++ ++a+++  + e  la             +ip++++i + ++lv ++    a+tr
  MMETSP0890-20130614|5993_1 280 LEEIATAIIENEADAIIFDDELNLAQQRNilselinigNIPASTQILDRTQLVLQIFSERAKTR 343
                 3333333333333333333333333333344445555666666666666666665555555555 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 5.3e-05
   PF13191.1  18 rvsegsp....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn...l 66 
                 + +  ++    l+ ++G+   GK+sLl++l ++ +++r  ++    d+ l+    +
  MMETSP0890-20130614|5993_1 427 KRNIEQTqdipLIALVGYTNAGKTSLLNALVDATAAARSDEQQLYADDKLFAtldP 482
                 4333333456599****************888888888777777777666664441 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.16       1      23 [.     437     459 ..     437     465 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
                 -EEEEE-------HHHHHHHHHH CS
   PF03205.9   1 pivavvGpkdsGKTtlieklvnk 23 
                 p++a+vG+++ GKT+l+  lv  
  MMETSP0890-20130614|5993_1 437 PLIALVGYTNAGKTSLLNALVDA 459
                 6799*************999865 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.7   7.3e+02     163     196 ..      67     110 ..      22     180 .. 0.62
   2 ?    1.6   0.1      0.26   2.7e+02     110     128 ..     298     316 ..     213     436 .. 0.49
   3 ?   10.6   0.7   0.00046      0.48      20      40 ..     437     457 ..     414     476 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.7
   PF13476.1 163 eleeledekellek..........llqeeekek...eleeleeelee 196
                 e  ++ +     +k          l    +++k   +  ++e+e e+
  MMETSP0890-20130614|5993_1  67 ETSTARERATARRKkqglgnenndL---SNMKKggkRQSAVEKEKED 110
                 3333333333222222222221110...1111122222222222222 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.26
   PF13476.1 110 lelleideleqfleellks 128
                 +++l++++ +++l+el++ 
  MMETSP0890-20130614|5993_1 298 DDELNLAQQRNILSELINI 316
                 2222223333333333332 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00046
   PF13476.1  20 gltlItGpNGsGKTTildAic 40 
                 +l++++G + +GKT++l+A+ 
  MMETSP0890-20130614|5993_1 437 PLIALVGYTNAGKTSLLNALV 457
                 799****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1093  (0.0799444); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.19u 0.41s 00:00:01.60 Elapsed: 00:00:01.29
# Mc/sec: 1257.62
//
Query:       MMETSP0890-20130614|5999_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                       56  (0.00409596); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.73
# Mc/sec: 1979.46
//
Query:       MMETSP0890-20130614|5995_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.0   8.5    0.00018   20.9   0.1    3.9  5  PF13414.1  TPR repeat
    2.5e-06   26.7   5.5    7.4e-05   22.0   0.2    3.8  4  PF00515.23 Tetratricopeptide repeat
    3.2e-05   23.6   9.1      0.023   14.5   1.5    3.0  3  PF13424.1  Tetratricopeptide repeat
    7.6e-05   22.2  11.4     0.0025   17.5   0.1    4.7  5  PF07719.12 Tetratricopeptide repeat
      0.003   17.1   3.6       0.25   11.1   0.0    3.4  4  PF13176.1  Tetratricopeptide repeat
     0.0032   17.0   0.3      0.048   13.3   0.1    2.8  3  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   15.5   3.3        5.2    7.8   0.0    3.1  3  PF13578.1  Methyltransferase domain
      0.038   14.5  11.6        4.3    8.0   0.1    4.3  4  PF13432.1  Tetratricopeptide repeat
      0.059   13.1   3.6        1.2    8.9   0.0    2.7  2  PF13371.1  Tetratricopeptide repeat
        1.5    9.5  11.0        3.6    8.3   0.7    4.1  5  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   1.5e+03      22      34 ..      22      34 ..      18      35 .. 0.56
   2 !   20.9   0.1   1.3e-07   0.00018       1      31 [.      45      75 ..      45      98 .. 0.93
   3 !    5.4   0.0    0.0091        13      39      64 ..     146     170 ..     130     175 .. 0.84
   4 !    7.0   1.0    0.0029         4       6      69 .]     147     215 ..     143     215 .. 0.77
   5 ?    4.2   0.2     0.022        30      12      37 ..     193     218 ..     186     239 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.1
   PF13414.1 22 AieayekAleldp 34
                A   +e+Al+l+p
  MMETSP0890-20130614|5995_1 22 ATVRCEEALALEP 34
                4445555555554 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.3e-07
   PF13414.1  1 enAealkelGnalfkegdydeAieayekAle 31
                ++A+ lke+G  lfk++dy  A e+y+++l+
  MMETSP0890-20130614|5995_1 45 QDAKILKERGSILFKLKDYVAAAECYKRGLD 75
                5799************************996 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0091
   PF13414.1  39 lyynlAlaylklgkdyeeAledyekA 64 
                  y+nlA +  + g++ ++A+ ++++A
  MMETSP0890-20130614|5995_1 146 TYLNLARCASHVGRN-KDAVVCATLA 170
                 79***********76.8999888877 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0029
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnae......lyynlAlaylklgkdyeeAledyekAleldP 69 
                 + +l+ ++ + g+ ++A+ + + A  +  ++        +   ++ a+l ++ + ++Al+d   A el+P
  MMETSP0890-20130614|5995_1 147 YLNLARCASHVGRNKDAVVCATLAAGIAQHDEHtdhlitAKILRSRAHLAQN-HLKQALRDSAAATELAP 215
                 7888889999999999999999998886543333466778888888888875.88999999998888887 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.022
   PF13414.1  12 alfkegdydeAieayekAleldpnna 37 
                 a++ ++ +++A++    A+el p++ 
  MMETSP0890-20130614|5995_1 193 AHLAQNHLKQALRDSAAATELAPSDH 218
                 56677777778887777888877765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.65   8.9e+02      24      32 ..      26      34 ..      26      35 .. 0.91
   2 !   22.0   0.2   5.4e-08   7.4e-05       1      28 [.      47      74 ..      47      75 .. 0.95
   3 ?    3.9   0.0     0.028        38       3      23 ..     146     166 ..     145     176 .. 0.90
   4 ?   -0.8   0.0      0.85   1.2e+03      10      23 ..     193     206 ..     192     217 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.65
                HHHHHHHHT CS
  PF00515.23 24 yekALelnP 32
                +e+AL l+P
  MMETSP0890-20130614|5995_1 26 CEEALALEP 34
                89*****99 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 5.4e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekAL 28
                ak+l+ +G +++kl++y  A e+y++ L
  MMETSP0890-20130614|5995_1 47 AKILKERGSILFKLKDYVAAAECYKRGL 74
                7899*********************988 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHTT-HHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAley 23 
                 ++ nl+ +  + g+ ++A+ +
  MMETSP0890-20130614|5995_1 146 TYLNLARCASHVGRNKDAVVC 166
                 699***************998 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.85
                 HHHHTT-HHHHHHH CS
  PF00515.23  10 aylklgkydeAley 23 
                 a+l ++ +++Al +
  MMETSP0890-20130614|5995_1 193 AHLAQNHLKQALRD 206
                 56778888888876 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.6e-05      0.09       5      38 ..      47      81 ..      42      98 .. 0.82
   2 !   14.5   1.5   1.7e-05     0.023       4      67 ..     143     205 ..     138     216 .. 0.77
   3 ?   -2.2   0.0       2.7   3.6e+03      33      33 ..     240     240 ..     220     268 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.6e-05
   PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalel.lrel 38
                a+il + + +l++l+dy  A e+y++ l+   r++
  MMETSP0890-20130614|5995_1 47 AKILKERGSILFKLKDYVAAAECYKRGLDSmKRQY 81
                789999*********************99966665 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.7e-05
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAle 67 
                 + t++ nla +  + g+ ++A  +   a  ++++  + dh+ ta++l+  a  +la++ +++Al+
  MMETSP0890-20130614|5995_1 143 MLTTYLNLARCASHVGRNKDAVVCATLAAGIAQHDeHTDHLITAKILRSRA--HLAQNHLKQALR 205
                 57999**************************76662668999998887664..555566666665 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.7
   PF13424.1  33 e 33 
                 +
  MMETSP0890-20130614|5995_1 240 K 240
                 2 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.78   1.1e+03      24      32 ..      26      34 ..      20      35 .. 0.80
   2 !   17.5   0.1   1.8e-06    0.0025       1      28 [.      47      74 ..      47      79 .. 0.92
   3 ?    1.9   0.0      0.18   2.4e+02       4      25 ..     147     168 ..     145     176 .. 0.86
   4 !    6.8   0.1    0.0046       6.4       6      34 .]     189     217 ..     185     217 .. 0.89
   5 ?   -1.8   0.2       2.7   3.7e+03      15      27 ..     226     238 ..     222     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.78
                HHHHHHH-T CS
  PF07719.12 24 fekAleldP 32
                +e+Al+l+P
  MMETSP0890-20130614|5995_1 26 CEEALALEP 34
                79*****98 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.8e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAl 28
                a++l ++G +++kl+dy  A+e++++ l
  MMETSP0890-20130614|5995_1 47 AKILKERGSILFKLKDYVAAAECYKRGL 74
                678999*******************988 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.18
                 HHHHHHHHHHTT-HHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafe 25 
                 + nl++++ + g+ ++A+ +  
  MMETSP0890-20130614|5995_1 147 YLNLARCASHVGRNKDAVVCAT 168
                 889**************98765 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0046
                 HHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ +a+++++++++Al++   A el+P +
  MMETSP0890-20130614|5995_1 189 LRSRAHLAQNHLKQALRDSAAATELAPSD 217
                 7899*************999999999975 PP

  == domain 5    score: -1.8 bits;  conditional E-value: 2.7
                 T-HHHHHHHHHHH CS
  PF07719.12  15 gdyeeAleafekA 27 
                 +d e+A++a  +A
  MMETSP0890-20130614|5995_1 226 RDVERAKRAALRA 238
                 6889999998887 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.1   4.2e+03      22      34 ..      26      36 ..      25      40 .. 0.58
   2 !   11.1   0.0   0.00018      0.25       6      29 ..      54      75 ..      50      84 .. 0.88
   3 ?    5.3   0.0     0.013        18       1      19 [.     146     164 ..     146     179 .. 0.86
   4 ?   -3.6   0.0       9.3   1.3e+04      20      29 ..     198     205 ..     193     208 .. 0.58

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3.1
   PF13176.1 22 yeraLaltkdpld 34
                +e+aLal  +p++
  MMETSP0890-20130614|5995_1 26 CEEALAL--EPFE 36
                6895555..4444 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00018
   PF13176.1  6 arlysrlgdyekAielyeraLalt 29
                +++ ++l dy  A+e+y+r  +l+
  MMETSP0890-20130614|5995_1 54 GSILFKLKDYVAAAECYKR--GLD 75
                8999***************..887 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.013
   PF13176.1   1 allnLarlysrlgdyekAi 19 
                 ++lnLar+ s +g+ ++A+
  MMETSP0890-20130614|5995_1 146 TYLNLARCASHVGRNKDAV 164
                 79**************998 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 9.3
   PF13176.1  20 elyeraLalt 29 
                 +++++  al+
  MMETSP0890-20130614|5995_1 198 NHLKQ--ALR 205
                 45666..444 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   3.5e-05     0.048       2      29 ..      48      75 ..      47      78 .. 0.89
   2 ?   -2.1   0.0       2.8   3.9e+03       3      20 ..     146     163 ..     145     173 .. 0.75
   3 ?   -0.7   0.0       1.1   1.5e+03      18      28 ..     194     204 ..     191     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.5e-05
                --TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekale 29
                k++ ++G+i+++l+dy +A e++++ l+
  MMETSP0890-20130614|5995_1 48 KILKERGSILFKLKDYVAAAECYKRGLD 75
                567789******************9886 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.8
                 -TTT---HHHHTT-HHHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkA 20 
                 +y+nl+++    G+ + A
  MMETSP0890-20130614|5995_1 146 TYLNLARCASHVGRNKDA 163
                 589999987766666555 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.1
                 HHHHHHHH--- CS
   PF13181.1  18 dkAkeylekal 28 
                 ++A ++l++al
  MMETSP0890-20130614|5995_1 194 HLAQNHLKQAL 204
                 6899*****98 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0038       5.2      63      93 ..       3      34 ..       1      58 [. 0.86
   2 ?    1.3   0.0      0.41   5.5e+02      64      84 ..     104     124 ..      39     143 .. 0.70
   3 ?    5.6   0.5     0.019        26      20      87 ..     159     238 ..     145     258 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0038
   PF13578.1 63 asla.dgsiDllfiDgghaaeavladleallp 93
                +sl+ dg+iD++++D++ +a+ + ++  al+p
  MMETSP0890-20130614|5995_1  3 SSLNgDGTIDVVYFDSDAEATVRCEEALALEP 34
                5677789**********999888888777776 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.41
   PF13578.1  64 sladgsiDllfiDgghaaeav 84 
                  l++ s+D+ + Dg+++ ++v
  MMETSP0890-20130614|5995_1 104 CLEETSVDVSYEDGSPDDDDV 124
                 333789999999*99988776 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.019
   PF13578.1  20 rngagrlysvdpdpg....aeeaaalaeeagladrvrllkgdseealasla.........dgsiDllfiDgghaaeavlad 87 
                 rn+   +++    +g    +e+++ l+  + l++r++l +  + +al++ a         ++s+ ll  D + a++a+l++
  MMETSP0890-20130614|5995_1 159 RNK-DAVVCATLAAGiaqhDEHTDHLITAKILRSRAHLAQNHLKQALRDSAaatelapsdHKSVQLLARDVERAKRAALRA 238
                 333.35555555555555567888888889999999999888877766444455566887889999999998877777665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0031       4.3      21      56 ..      27      72 ..      20      80 .. 0.69
   2 ?    4.4   0.0     0.042        57      34      51 ..     147     164 ..     144     178 .. 0.86
   3 ?    6.0   1.0     0.013        17      32      64 ..     185     217 ..     167     218 .. 0.81
   4 ?    0.0   0.2      0.96   1.3e+03      11      23 ..     226     238 ..     222     260 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0031
   PF13432.1 21 eaalalaPe..........aaeallllaeallrlgrldeAaallra 56
                e+alal+P+          +a +l +++ +l++l+++ +Aa+ +++
  MMETSP0890-20130614|5995_1 27 EEALALEPFeeeegkemsqDAKILKERGSILFKLKDYVAAAECYKR 72
                5566666444444444555999999999999999999999875555 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.042
   PF13432.1  34 llllaeallrlgrldeAa 51 
                 +l+la+++ + gr ++A+
  MMETSP0890-20130614|5995_1 147 YLNLARCASHVGRNKDAV 164
                 89***********99996 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.013
   PF13432.1  32 eallllaeallrlgrldeAaallraalalaPdd 64 
                  a+ l+ +a+l++++l++A++  +aa +laP+d
  MMETSP0890-20130614|5995_1 185 TAKILRSRAHLAQNHLKQALRDSAAATELAPSD 217
                 5889999************95555555888876 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.96
   PF13432.1  11 GdydeAlaaleaa 23 
                 +d+++A +a  +a
  MMETSP0890-20130614|5995_1 226 RDVERAKRAALRA 238
                 5566666444333 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00086       1.2      28      56 ..      46      74 ..      19      82 .. 0.88
   2 ?    4.0   0.7      0.03        41       4      64 ..     193     219 ..     189     238 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00086
   PF13371.1 28 dpyerRDrGlllaqlgclaaAaedLeafl 56
                d+  + +rG +l++l ++ aAae++ + l
  MMETSP0890-20130614|5995_1 46 DAKILKERGSILFKLKDYVAAAECYKRGL 74
                677789*****************998765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.03
   PF13371.1   4 iylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                 ++l +++  +AL+ ++   +laP d                                  + 
  MMETSP0890-20130614|5995_1 193 AHLAQNHLKQALRDSAAATELAPSD----------------------------------HK 219
                 3455555555555555555555554..................................44 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0        10   1.4e+04      22      32 ..      24      34 ..      20      38 .. 0.67
   2 ?    4.5   0.0     0.046        63       3      29 ..      49      75 ..      47      91 .. 0.86
   3 ?    0.8   0.0      0.71   9.8e+02       3      23 ..     146     166 ..     144     183 .. 0.79
   4 ?    8.3   0.7    0.0026       3.6       6      43 ..     189     226 ..     185     227 .. 0.89
   5 ?    0.3   0.1      0.99   1.4e+03      13      39 ..     224     250 ..     220     255 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 10
   PF13428.1 22 allrralalaP 32
                  +++alal P
  MMETSP0890-20130614|5995_1 24 VRCEEALALEP 34
                55678888776 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.046
   PF13428.1  3 allalarallalGdpdeAiallrrala 29
                 l +++ +l+ l d+ +A+++++r l 
  MMETSP0890-20130614|5995_1 49 ILKERGSILFKLKDYVAAAECYKRGLD 75
                5778999****************9985 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.71
   PF13428.1   3 allalarallalGdpdeAial 23 
                 ++l lar   + G+ ++A+ +
  MMETSP0890-20130614|5995_1 146 TYLNLARCASHVGRNKDAVVC 166
                 689999999999999999865 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0026
   PF13428.1   6 alarallalGdpdeAiallrralalaPddaealllLar 43 
                 ++ ra+la++++++A++   +a +laP+d     lLar
  MMETSP0890-20130614|5995_1 189 LRSRAHLAQNHLKQALRDSAAATELAPSDHKSVQLLAR 226
                 5789************************9988888876 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.99
   PF13428.1  13 alGdpdeAiallrralalaPddaeall 39 
                  + d+++A +++ ra ++  ++   + 
  MMETSP0890-20130614|5995_1 224 LARDVERAKRAALRANKQLAKEVSTWV 250
                 567888888888888666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 886.32
//
Query:       MMETSP0890-20130614|5998_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-07   30.9   0.0    5.4e-07   29.4   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
    1.2e-05   24.4   0.1    0.00097   18.1   0.0    2.3  2  PF00735.13 Septin
    0.00036   20.2   3.2       0.26   10.9   0.0    3.3  4  PF00350.18 Dynamin family
    0.00057   19.0   0.0     0.0019   17.3   0.0    1.9  1  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.043   13.6   0.1      0.043   13.6   0.1    2.2  2  PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
      0.075   13.4   0.0       0.24   11.7   0.0    2.0  1  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.4e-10   5.4e-07       2     113 ..     191     327 ..     190     328 .. 0.61

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.4e-10
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEE...........ETTE............EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHH.....HTCCCEEEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenev...........kkek............iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasavlkeadkellnel.....eakkplilvln 113
                 ++ +G p  GKSt +n   ge+    +++ + T      ++            +  +            + lvDtPG+ +++ ++   e ++ ++++  +r++++l+v++ +++++++ ++  + l     + ++p+il++n
  MMETSP0890-20130614|5998_1 191 FVCIGAPGHGKSTCLNEFAGEE-FAGEKKLFATSASgSSCTQagnalwdkrenH--RdihvvrgntaytMHLVDTPGFPDPDLKKA-AECYDWVIKACnKRINGVLYVMNPEREIQDTMNRY-RVLmrqfiNLRVPMILLIN 327
                 688****************864.3556666666666333221333345544330..144444444554447******976644444.778888999999**********9655444422222.2222222224566666665 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.3e-07   0.00097       4      99 ..     188     293 ..     185     315 .. 0.70
   2 !    3.7   0.2    0.0098        22     145     202 ..     460     521 ..     452     523 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.3e-07
  PF00735.13   4 eftlmvvGesglGkttlintlfetdlieee.........eeleeakeekkktveikkkkaeieedgvklnltvidtpgfGd..aidnskswkpiveyideqfeeyle 99 
                 e+t +++G+ g Gk+t +n +  ++   e+         ++ ++a +    + e  +++  +   ++  ++ ++dtpgf d      +++++ +++  +++++ +l 
  MMETSP0890-20130614|5998_1 188 EITFVCIGAPGHGKSTCLNEFAGEEFAGEKklfatsasgSSCTQAGNALWDKREN-HRDIHVVRGNTAYTMHLVDTPGFPDpdLKKAAECYDWVIKACNKRINGVLY 293
                 6899*******************99999984444333322222222222233333.33334445568999*********873145679************9998764 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0098
  PF00735.13 145 liPviaKaDtltkeElkefKkkireeiee...qeikiyk.pdeeededeekelaeklkeslP 202
                 l+Pvi+ a+   ++   e+K+  ++e+e+   + i  ++  +e + ++e ++++++l+e l 
  MMETSP0890-20130614|5998_1 460 LVPVIGWANLAYSKHKAEIKRSRIRELEQieqNFIIQHDnINEAKLKEEYEKQKKELDELLS 521
                 89******999888777777655555544110444333334444444444788888887765 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0008       1.8       3      33 ..     193     223 ..     191     226 .. 0.86
   2 !   10.9   0.0   0.00012      0.26      97     146 ..     251     306 ..     229     327 .. 0.80
   3 ?   -2.8   0.0       1.8   4.2e+03      28      47 ..     394     413 ..     385     463 .. 0.51
   4 ?   -1.7   0.3      0.86     2e+03      64      83 ..     485     504 ..     465     525 .. 0.48

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0008
                 EE--TT---HHHHHHH--------------- CS
  PF00350.18   3 vvGsqSaGKSSllnaLlgedilprgpgptTr 33 
                  +G+  +GKS+ ln   ge++   ++   T+
  MMETSP0890-20130614|5998_1 193 CIGAPGHGKSTCLNEFAGEEFAGEKKLFATS 223
                 689999***************9888777765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00012
                 ETTS-SEEEEE------------....HHHHHHH.STTEEEEEEEETTS-STT-.S CS
  PF00350.18  97 sllvkgltlvDtPGldsvnkrdq....elveeyi.kkadiilavtdanhdlsts.e 146
                   +  ++ lvDtPG+ +++ ++     ++v + + k+ + +l+v++ ++++ ++ +
  MMETSP0890-20130614|5998_1 251 GNTAYTMHLVDTPGFPDPDLKKAaecyDWVIKACnKRINGVLYVMNPEREIQDTmN 306
                 56677899*******88666666899988888888999********9999887643 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.8
                 --------EEEEEEE----- CS
  PF00350.18  28 pgptTrrplvlqlgeeeras 47 
                 ++p T+++ +lq  ++   +
  MMETSP0890-20130614|5998_1 394 EEPKTSNIKTLQELQDDVDR 413
                 45666666666653322211 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.86
                 -CHHHHHHHHHHH------- CS
  PF00350.18  64 dfdevreeieketeklagan 83 
                 +++++++++  +++++++a+
  MMETSP0890-20130614|5998_1 485 ELEQIEQNFIIQHDNINEAK 504
                 33444444443333333221 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.3e-07    0.0019      31     105 ..     184     273 ..     155     279 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8.3e-07
                 HHCTTSBEEEE-------HHHHHHH----.................----S--------------S-BEEE-.---EEES----TS--GCCS CS
  PF03193.11  31 ellkdktsvlvGqSGvGKSsLinallpel.................dlkvgevseklgrGkhTTtavellklsegglliDtPGfrelelekv 105
                 + lk+ t v +G  G GKS+ +n +++e+                 +++ +++ +k  r  h   +v   + +    l+DtPGf  ++l+k 
  MMETSP0890-20130614|5998_1 184 RRLKEITFVCIGAPGHGKSTCLNEFAGEEfagekklfatsasgsscTQAGNALWDK--RENHRDIHVVRGNTAYTMHLVDTPGFPDPDLKKA 273
                 57899999*********************999999999999998765555555444..4445555555555555669********9999865 PP

>> PF09036.5  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.9e-05     0.043      14      56 ..     390     432 ..     383     448 .. 0.90
   2 ?   -2.4   0.2       1.9   4.3e+03      39      47 ..     480     488 ..     472     514 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-05
                 HSTTS-------S----HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF09036.5  14 klpdseppfmelrsvgdleqelerCkasirrlekevnkerfrm 56 
                  ++ +ep   ++++ ++l+++++rC++s    eke n+ r r+
  MMETSP0890-20130614|5998_1 390 SFSLEEPKTSNIKTLQELQDDVDRCRDSKYAAEKERNEFRTRI 432
                 57889999*****************************999886 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.9
                 HHHHHHHHH CS
   PF09036.5  39 kasirrlek 47 
                 ++ ir le+
  MMETSP0890-20130614|5998_1 480 RSRIRELEQ 488
                 556777776 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.24       2      47 ..     191     237 ..     190     327 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp...............kkklpeeikgdtlavktlevdv 47 
                 +v +G +g GKs+ l++++geef                +              +  ++ +
  MMETSP0890-20130614|5998_1 191 FVCIGAPGHGKSTCLNEFAGEEFAgekklfatsasgsscT--------------QAGNALW 237
                 5789********************8533333333333332..............3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1065  (0.0778964); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:00.72
# Mc/sec: 1750.67
//
Query:       MMETSP0890-20130614|6007_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.9   0.0       0.04   13.8   0.0    1.1  1  PF13636.1 pre-rRNA processing and ribosome biogenesis


Domain annotation for each model (and alignments):
>> PF13636.1  pre-rRNA processing and ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-06      0.04      33      69 ..      18      54 ..       1      61 [. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.9e-06
   PF13636.1 33 shalal.alkkeeaknvlelsdeqaeaYlkgetielde 69
                + +la+ +lk+ ea++ ++l++e +eaY +g+ i++  
  MMETSP0890-20130614|6007_1 18 R-QLAIrILKTPEAEEKCRLTRETVEAYRSGKIIQIVG 54
                2.333337************************999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 269.06
//
Query:       MMETSP0890-20130614|6010_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-13   49.6   0.0    4.2e-13   49.0   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    3.1e-10   40.1   0.1    4.1e-10   39.6   0.1    1.2  1  PF13420.1  Acetyltransferase (GNAT) domain
    2.8e-08   33.7   0.1      5e-08   32.8   0.1    1.4  1  PF13508.1  Acetyltransferase (GNAT) domain
    1.1e-05   25.4   0.0    1.4e-05   25.0   0.0    1.3  1  PF13673.1  Acetyltransferase (GNAT) domain
    3.1e-05   23.7   0.0    3.8e-05   23.5   0.0    1.3  1  PF13523.1  Acetyltransferase (GNAT) domain
    0.00076   19.0   0.1     0.0012   18.4   0.0    1.3  1  PF08445.5  FR47-like protein
     0.0057   16.4   0.0     0.0075   16.0   0.0    1.3  1  PF13527.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.18   11.3   0.0    1.3  1  PF12568.3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.5e-16   4.2e-13       3      83 .]      73     154 ..      71     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.5e-16
                 ETTEBEEEEEEEEECTTSCSTTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHHHTT-E CS
  PF00583.19   3 edgelvGfaslsvigedgraertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYeklGFk 83 
                  +g +vG++++++ + +   ++++yi+++ V+ +yr+ GiG++Ll++l+  a + + +  i+l+v+ +n+ a+++Y k GF+
  MMETSP0890-20130614|6010_1  73 LGGFVVGAICGRLESLPNSNKKKLYIMTIGVLVAYRKAGIGQQLLDYLMNNATKmNDVALIYLHVQTNNESALRFYSKAGFQ 154
                 577788888888777754448*********************************999************************6 PP

>> PF13420.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   2.4e-13   4.1e-10      74     145 ..      93     164 ..      52     167 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 2.4e-13
   PF13420.1  74 yrwkaelsiylakdnkdeglgrklldalieylfkemnienilaeiastnikaiqflkklGFekvgilkncgk 145
                 +++  +++i +  +++++g+g++lld+l++ + k+ ++  i+  +  +n++a +f++k GF+ +g++ n++k
  MMETSP0890-20130614|6010_1  93 KKKLYIMTIGVLVAYRKAGIGQQLLDYLMNNATKMNDVALIYLHVQTNNESALRFYSKAGFQRLGKINNYYK 164
                 66667777888889******************9***********************************9987 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   2.9e-11     5e-08      13      78 ..      76     154 ..      66     155 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 2.9e-11
   PF13508.1  13 eivGflvl......redgetayiggvavdpeyrgkGlGskllnklkeeygekp....ivlla...rparkkFYeklGFk 78 
                  +vG ++       +++++  yi  + v  +yr+ G+G++ll +l++++ + +    i+l++   ++++++FY k GF+
  MMETSP0890-20130614|6010_1  76 FVVGAICGrleslpNSNKKKLYIMTIGVLVAYRKAGIGQQLLDYLMNNATKMNdvalIYLHVqtnNESALRFYSKAGFQ 154
                 466644445577777777788************************99997666222345665333579**********8 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.2e-09   1.4e-05      50     117 .]      72     153 ..      18     153 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 8.2e-09
   PF13673.1  50 erggevvGfag..lk..pdas.....lsllyvrpeargrGigraLldaieaeark..gikvltte...asklarplyerlGf 117
                   gg vvG+++  l+  p+++     +  + v+ ++r+ Gig +Lld++++ a+k  +++ ++++   ++  a ++y + Gf
  MMETSP0890-20130614|6010_1  72 YLGGFVVGAICgrLEslPNSNkkklyIMTIGVLVAYRKAGIGQQLLDYLMNNATKmnDVALIYLHvqtNNESALRFYSKAGF 153
                 5566666665534223422223466677799********************9988899998888888**************9 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.2e-08   3.8e-05      77     149 ..      97     166 ..      29     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.2e-08
   PF13523.1  77 sdrgfhllvaeprargkgltrawlrsllhylfadprtervvvepdvdNkrmialleraGFekvgefdlphkra 149
                 + +++++lva   +r+ g+++++l  l++ + + + +  + + +  +N+ +++++ +aGF+++g ++ + kr+
  MMETSP0890-20130614|6010_1  97 YIMTIGVLVA---YRKAGIGQQLLDYLMNNATKMNDVALIYLHVQTNNESALRFYSKAGFQRLGKINNYYKRI 166
                 5577777776...8**************99998778******************************9888775 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.9e-07    0.0012      23      80 ..      97     156 ..      78     163 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.9e-07
                 -----EE-GGG--------HHHHHHHHHH---S-..EEEEEETT-HHHHHHHHH---B-- CS
   PF08445.5  23 elgalqvlpehrrrGlgsrlvkalakeiaergkt..vllvvvasNtpsirlyeklGfeki 80 
                 ++  + vl   r+ G g++l   l ++  + ++   + l+v+++N+ + r+y+k Gf+ +
  MMETSP0890-20130614|6010_1  97 YIMTIGVLVAYRKAGIGQQLLDYLMNNATKMNDValIYLHVQTNNESALRFYSKAGFQRL 156
                 57778899999****************99966651156899****************986 PP

>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.4e-06    0.0075      67     126 ..      89     154 ..      34     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.4e-06
   PF13527.1  67 pGkelpaagvtgVatapehrgrgllrkLlarlleemrer.gqplsilfP.....ssypiYrrfGye 126
                 p++  +  +++ +++   +r+ g+ ++Ll++l+ ++ +  ++ l++l+      s+ ++Y + G++
  MMETSP0890-20130614|6010_1  89 PNSNKKKLYIMTIGVLVAYRKAGIGQQLLDYLMNNATKMnDVALIYLHVqtnneSALRFYSKAGFQ 154
                 556667789*************************99887588999999998888888999999996 PP

>> PF12568.3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.18      60     122 ..      94     155 ..      90     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0001
   PF12568.3  60 kkavlsdlcvRevTRrRGVGlyLleearrqlpevkewvlaledveeaekavleaflealgfaa 122
                 kk  ++ + v    R+ G+G++Ll+   +++ +++ ++l   +v++++ + + +f +++gf++
  MMETSP0890-20130614|6010_1  94 KKLYIMTIGVLVAYRKAGIGQQLLDYLMNNATKMNDVALIYLHVQTNN-ESALRFYSKAGFQR 155
                 555666666777789***************************999765.55567888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 733.65
//
Query:       MMETSP0890-20130614|6011_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   11.3   0.1       0.82    8.1   0.0    2.1  2  PF14236.1 Domain of unknown function (DUF4338)


Domain annotation for each model (and alignments):
>> PF14236.1  Domain of unknown function (DUF4338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0     6e-05      0.82     217     258 ..     139     181 ..     118     196 .. 0.83
   2 ?    0.8   0.0    0.0099   1.4e+02     172     215 ..     231     275 ..     222     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 6e-05
   PF14236.1 217 eteGrGkl.hlseelyeklreyeskgektakgygnGpkirlrv 258
                    G  ++ ++++ ly  + +++++++ + k+yg+G k r+r 
  MMETSP0890-20130614|6011_1 139 HSAGLERFkDIKDYLYGWISAFRKTTMMYDKSYGVGLKARRRI 181
                 55555554267899*************************9986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.0099
   PF14236.1 172 erptlleteelqakLvavtttsalGr.SsiYnranynerliwisl 215
                 e   l+ ++ ++a+ +++t+++a+G  Ss+   a+ +++ i++ +
  MMETSP0890-20130614|6011_1 231 EDHQLIASRYIKAESMILTKNRAHGEdSSMWTCASRCNKRIVTFI 275
                 556678888999*************65788887777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.78
# Mc/sec: 903.24
//
Query:       MMETSP0890-20130614|6017_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-27   93.9   0.0    5.2e-27   93.4   0.0    1.3  1  PF01588.15 Putative tRNA binding domain


Domain annotation for each model (and alignments):
>> PF01588.15  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   3.8e-31   5.2e-27       1      94 [.      59     153 ..      59     154 .. 0.99

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 3.8e-31
                 EEEEEEEEEEEETTSTTEEEEEEE----C.EEEEE-ETTTS-HCCCTT-EEEEETSSESEE----EE-SEB-EEETE-S--EEEEEESSS----- CS
  PF01588.15   1 lrvGkvleaekhpnadkLlvlkvdvGeee.rqivsgaknvyapeelvaklvvvvanlkpkklrGveSeGMilsaeeleeeevellelpeeveaGe 94 
                 +rvGk ++a +hp+++kL+v+ +d+Geee rqivsg++ +y+  +l+++   vvanl  +kl G+ S GM+l+ +e+++e+ve++++p++++ G+
  MMETSP0890-20130614|6017_1  59 IRVGKFVSAHEHPESEKLFVEDIDIGEEEpRQIVSGLRAYYSLSDLEDRRCLVVANLPKAKLAGIDSFGMVLCGSENDKEKVEFISPPDDAKIGD 153
                 79*******************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:01.06
# Mc/sec: 490.57
//
Query:       MMETSP0890-20130614|6019_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-45  153.1   0.0    4.3e-45  152.8   0.0    1.1  1  PF00071.17 Ras family
    2.4e-20   73.1   0.0    3.5e-20   72.5   0.0    1.3  1  PF08477.8  Miro-like protein
    1.6e-12   46.9   0.0    2.1e-12   46.5   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    6.9e-07   28.5   0.0      9e-07   28.1   0.0    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
    8.1e-06   25.2   0.0    8.4e-05   21.9   0.0    2.4  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0011   17.6   1.1      0.021   13.4   0.0    2.9  3  PF00503.15 G-protein alpha subunit
     0.0058   15.7   0.0     0.0079   15.3   0.0    1.3  1  PF09439.5  Signal recognition particle receptor beta subunit
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.21   11.3   0.0    1.4  1  PF06858.9  Nucleolar GTP-binding protein 1 (NOG1)
       0.13   11.7   0.0       0.22   10.9   0.0    1.3  1  PF03764.13 Elongation factor G, domain IV


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   2.8e-48   4.3e-45       1     160 [.      32     187 ..      32     189 .. 0.97

  Alignments for each domain:
  == domain 1    score: 152.8 bits;  conditional E-value: 2.8e-48
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHH CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 Kl+l+GdsavGKt ++ rf  d+++ ++ sT     ++k++e+dgk+v+++iwDTAGqe+f++++++yy+ a++++l++d+t++++++++++w+ee+++ +e ++p++Lv+nK+D++   +v++++ + +a++ +l+f+ +SA + +nv +af ++++++
  MMETSP0890-20130614|6019_1  32 KLILLGDSAVGKTKMVERFLMDEYNPQQLSTYALTLFRKNLEIDGKNVSVDIWDTAGQERFNKMHPAYYHRAHACILCFDVTRKATYQHLANWYEELRESCE-SIPCILVANKIDIDY--QVTRKNFK-FASSRNLPFYFVSAADGTNVVKAFRAAIEAA 187
                 89****************************************************************************************************.5************96..99998866.*************************999875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   2.3e-23   3.5e-20       1     119 []      32     145 ..      32     145 .. 0.94

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 2.3e-23
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 k++++Gd+ vGK+ ++++++ +e+     ++ +   tl  k le+d+++ ++ +wd++g+e+++k+h+   ++a a +l +d+t++++++++    +w++elr++ ++ip ilv+nk+D
  MMETSP0890-20130614|6019_1  32 KLILLGDSAVGKTKMVERFLMDEYN--PQQLSTYALTLFRKNLEIDGKNVSVDIWDTAGQERFNKMHPAYYHRAHACILCFDVTRKATYQHL---ANWYEELRESCESIPCILVANKID 145
                 7899*******************99..677788888999999*************************************************7...7899999998889*********99 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.4e-15   2.1e-12      12     136 ..      28     155 ..      21     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.4e-15
                 TSEEEEEEE--TT---HHHHHHHHHS-EEE.....E-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHH CS
  PF00025.16  12 kkelrilllGLDnaGKtTilkklkleelvt.....tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeel 136
                 + e++++llG  + GKt +++++ ++e +         T+  +  e+  kn+++ +wD  Gqe+  ++   Y+++ +a i + D++ +   ++  +  ++l  +e  ++++ +++aNK+D+  ++++++ 
  MMETSP0890-20130614|6019_1  28 EAEIKLILLGDSAVGKTKMVERFLMDEYNPqqlstYALTLFRKNLEIDGKNVSVDIWDTAGQERFNKMHPAYYHRAHACILCFDVTRKATYQHLANWYEEL--RESCESIPCILVANKIDIDYQVTRKNF 155
                 679*******99********99988876542121144555555667777*************************************999888888888887..5678899***********999988766 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     6e-10     9e-07       1     122 [.      32     145 ..      32     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 6e-10
   PF04670.7   1 klLLmGksgsGKtSmrs.iiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvlihKmD 122
                 kl+L+G s  GKt m +  + ++y +++  + + T   ++ ++   +n+++++wD+ Gqe+f +      +   ++  ++ i  fD++    +++ +++ +  e l+++ + +      +K+D
  MMETSP0890-20130614|6019_1  32 KLILLGDSAVGKTKMVErFLMDEYNPQQLSTYALTLFRKNLEID-GKNVSVDIWDTAGQERFNKM-----HPAYYHRAHACILCFDVT---RKATYQHLANWYEELRESCESIPCILVANKID 145
                 89************97625789**************87777775.899***********998877.....588999999********9...45666666666677777666666666666666 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.5e-08   8.4e-05      54     181 ..      65     182 ..      28     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5.5e-08
                 -BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--...EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHH CS
  PF00009.22  54 iTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvk...iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLlea 181
                 +T   ++ +++  +k+  + + Dt G + F k+  +  + + +++l +d++   + q    +    ++ ++    i+v NKiD  ++  ++  + ++         +  ++ p++++Sa +g+++ + + a
  MMETSP0890-20130614|6019_1  65 LTLFRKNLEID--GKNVSVDIWDTAGQERFNKMHPAYYHRAHACILCFDVTRKATYQHLANWYEELRESCEsipCILVANKIDIDYQVTRKNFKFAS---------S--RNLPFYFVSAADGTNVVKAFRA 182
                 56666666777..9***************************************9999999998887766555449********87665555544444.........2..3578888888888887654444 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.4e-05     0.021      32      78 ..       4      50 ..       1      73 [. 0.82
   2 ?   -0.5   0.0      0.23   3.5e+02     221     255 ..      72     109 ..      58     113 .. 0.75
   3 ?    1.4   0.0      0.06        91     335     373 ..     149     182 ..     125     198 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
                .--TTT---XXXXXXXXXXXXXXXXXEEEEEEEXXXXXXXHHHHHHH CS
  PF00503.15 32 eeekkrsslnddiskkleeekkkkkkevklLlLGqgeSGKsTilkqf 78
                e++++++++ d+++k+l+ e+  ++ e+kl+lLG +  GK+  +  f
  MMETSP0890-20130614|6019_1  4 ESKHSEEKKDDAEDKNLRPEELPDEAEIKLILLGDSAVGKTKMVERF 50
                5666777888999999*************************988766 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.23
                 X....XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEE CS
  PF00503.15 221 ve...sktefrlvDvGGqrserkkWipcfedvdaiiFl 255
                 +e   +++ + ++D++Gq    k    +++ ++a+i +
  MMETSP0890-20130614|6019_1  72 LEidgKNVSVDIWDTAGQERFNKMHPAYYHRAHACILC 109
                 34556899999*******88777788888888888876 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.06
                 HHHHHHHHHHHHHTXXGSXEEEEEXXTTXHHHHHHHHHH CS
  PF00503.15 335 kylrnkfkeinrensenrkiythftsatdtenvrkvfaa 373
                 +  r+ fk   +     r++ ++f+sa d +nv k f a
  MMETSP0890-20130614|6019_1 149 QVTRKNFKFASS-----RNLPFYFVSAADGTNVVKAFRA 182
                 333333333322.....5666667777777777666665 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.2e-06    0.0079       5      76 ..      32     105 ..      28     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.2e-06
                 EEEEE--TT---HHHHHHHHHSS-------SS-EEETT-......-----EEEE----GGGGHHHHHHHHHHGGB CS
   PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSqessaalkv...ksekgkkltliDfPGheklrqklleklkakssl 76 
                 +++l+G s  GKT + +r + d++++ + S  + +  +     + k+ ++++ D  G+e++ + +   + +++++
  MMETSP0890-20130614|6019_1  32 KLILLGDSAVGKTKMVERFLMDEYNPQQLSTYALTLFRKnleIDGKNVSVDIWDTAGQERFNK-MHPAYYHRAHA 105
                 689***************************95544333323446789999*********9964.44443444444 PP

>> PF06858.9  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.21      16      58 .]     105     145 ..      98     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
   PF06858.9  16 avlflfDlseqcgysleeQlkLfkeikelFknkpvivVlnKiD 58 
                 a +  fD++ +  y  +  ++ ++e++e  ++ p i V+nKiD
  MMETSP0890-20130614|6019_1 105 ACILCFDVTRKATY--QHLANWYEELRESCESIPCILVANKID 145
                 45557899999999..666899********************9 PP

>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.22      23      71 ..     143     191 ..     130     194 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
                 -----------EEEEEE------EEEE--------GGGHHHHH---TTT CS
  PF03764.13  23 qsggdgqyakvilriePlegggnefvdetkggqvpkefkeavekGfqea 71 
                 + ++d q  ++  ++    + ++ fv++  g +v k f  a+e+++++ 
  MMETSP0890-20130614|6019_1 143 KIDIDYQVTRKNFKFASSRNLPFYFVSAADGTNVVKAFRAAIEAAIDWK 191
                 5789999999*******99***************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 638.03
//
Query:       MMETSP0890-20130614|6023_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   13.9   1.9      0.047   12.8   0.1    2.0  2  PF12795.2 Mechanosensitive ion channel porin domain
      0.029   12.9   0.5      0.033   12.8   0.3    1.1  1  PF03739.9 Predicted permease YjgP/YjgQ family
      0.053   11.8   6.1      0.065   11.5   4.3    1.0  1  PF09786.4 Cytochrome B561, N terminal
      0.082   12.5   2.4        2.9    7.5   0.0    2.7  2  PF07544.8 RNA polymerase II transcription mediator complex subunit 9
       0.15   11.8   3.4       0.76    9.5   1.4    2.0  2  PF05852.6 Gammaherpesvirus protein of unknown function (DUF848)
       0.19   10.9   7.5       0.25   10.6   4.9    1.3  1  PF04961.7 Formiminotransferase-cyclodeaminase
        0.5   10.1   7.7       0.28   11.0   0.1    2.2  2  PF13863.1 Domain of unknown function (DUF4200)
       0.83    9.9   6.3       0.95    9.7   0.0    3.1  3  PF04102.7 SlyX
       0.83    8.6   6.0        4.7    6.1   0.2    2.0  2  PF04582.7 Reovirus sigma C capsid protein
        1.1    9.3   8.8        5.7    7.1   6.2    1.7  2  PF03234.9 Cdc37 N terminal kinase binding
        1.3    8.8   5.4        2.4    8.0   0.3    2.6  2  PF04316.8 Anti-sigma-28 factor, FlgM
          3    6.5   6.5        5.2    5.7   4.4    1.4  1  PF14362.1 Domain of unknown function (DUF4407)
          4    7.3  11.0        9.5    6.1   7.7    1.7  1  PF08432.5 Fungal protein of unknown function (DUF1742)
        7.3    6.7  12.7         32    4.7   6.0    2.2  2  PF08232.7 Striatin family


Domain annotation for each model (and alignments):
>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.29   2.8e+02      53     160 ..      25      45 ..       4      82 .. 0.55
   2 ?   12.8   0.1   4.8e-05     0.047       6      75 ..      92     161 ..      89     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.29
   PF12795.2  53 elrelrqelealksaeeavkqelanlslsqLeqelaqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpegetplseaqrtllqaela 160
                 +  + ++e+e++++                                                                                       + +++ +
  MMETSP0890-20130614|6023_1  25 KKSDEKKEIENMET---------------------------------------------------------------------------------------EDKTKKE 45 
                 33333333333322.......................................................................................2222222 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 4.8e-05
   PF12795.2   6 lkkrkkntpeqkaliqdLeqalnfldeikkskqkadqyqkiiddapkelrelrqelealksa.eeavkqel 75 
                  k+ k+ +p  +  + +L++a + l + k+  ++ ++++k+i++   + ++l  ++ +l++    ++++ +
  MMETSP0890-20130614|6023_1  92 TKD-KSTEPPPTSRLTALRSAMATLGQWKERTDEVAELKKQISNLNLLVASLSDRIVTLEKHnNIEPPPLP 161
                 455.8889999999*********************************************988655555555 PP

>> PF03739.9  Predicted permease YjgP/YjgQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   3.3e-05     0.033     155     258 ..      22     135 ..       5     174 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.3e-05
   PF03739.9 155 yvgkvddngnelkdvtiydftadegvtsiitAksavleknne...klqltLkngeiyevnkdkaeysqesfdryeikinllpadlktlkenpeelsl..........seLksaikal 258
                 ++ k++d+++e++++   d+t++e+++  ++A +a++e++++   +l   +k  e+++  ++  e s+e+  +++ +++++p    t  ++  + +l          +eLk++i++l
  MMETSP0890-20130614|6023_1  22 FTTKKSDEKKEIENMETEDKTKKERLKAFVDASRASVETASTrlsGLMASMKSPESTTGESK--EDSTENDSTKDKSTEPPPTSRLTALRS-AMATLgqwkertdevAELKKQISNL 135
                 56677888889***************************999976555555555555554443..444444444444444444444444443.3444422222222224444444444 PP

>> PF09786.4  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.3   6.6e-05     0.065     238     355 ..      18     135 ..       3     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.6e-05
   PF09786.4 238 llekflkeedeevkkitesakknatpeetinsfgssspsfvnt.sknasdaarslkkrsyqlspspvaskqkastspkkgegelpn.mslesaeevlkrvgvldqleqwranlRqWiset 355
                 ++++f  ++ +e+k+i++++++  t++e+ + f ++s  +v t s+ +s+   s+k       +s   s+++   s+k  ++e+p+   l +   +++ +g+ ++  + +a+l + is+ 
  MMETSP0890-20130614|6023_1  18 TMQRFTTKKSDEKKEIENMETEDKTKKERLKAFVDASRASVETaSTRLSGLMASMKSPESTTGESKEDSTEND--STKDKSTEPPPtSRLTALRSAMATLGQWKERTDEVAELKKQISNL 135
                 579999999999*********************9999999887367799999999999999988877777755..5555568889978899999***********9*******9988874 PP

>> PF07544.8  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4     0.036        35      55      78 ..      27      50 ..      19      55 .. 0.87
   2 ?    7.5   0.0     0.003       2.9      55      82 ..     119     146 ..     103     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.036
   PF07544.8 55 eeqeaeIeeleeqiarkrevLkkl 78
                ++ ++eIe+ e + ++k+e Lk +
  MMETSP0890-20130614|6023_1 27 SDEKKEIENMETEDKTKKERLKAF 50
                56789****************988 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.003
   PF07544.8  55 eeqeaeIeeleeqiarkrevLkklkerv 82 
                 +e+ +e++el++qi++++ + ++l +r+
  MMETSP0890-20130614|6023_1 119 KERTDEVAELKKQISNLNLLVASLSDRI 146
                 7999*************99999998875 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.4   0.00078      0.76      61     128 ..      17      84 ..       5      99 .. 0.78
   2 ?    2.0   0.0      0.16   1.5e+02      51      81 ..     120     150 ..     101     177 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00078
   PF05852.6  61 ekvssleteieekkkelelLkkfdrkklerleaLtdrveelkeelefelerleaeegeeeelsseeee 128
                   ++  +t+ +++kke+e +++ d+ k erl a++d+ +   e+ + +l+ l a+ ++ e+ ++e++e
  MMETSP0890-20130614|6023_1  17 DTMQRFTTKKSDEKKEIENMETEDKTKKERLKAFVDASRASVETASTRLSGLMASMKSPESTTGESKE 84 
                 568888999999*************************9999999999999998774444444433332 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.16
   PF05852.6  51 eklkkekelkekvssleteieekkkelelLk 81 
                 e++++ +elk+++s+l+  +++ +  + +L+
  MMETSP0890-20130614|6023_1 120 ERTDEVAELKKQISNLNLLVASLSDRIVTLE 150
                 3344444455555555555544444444444 PP

>> PF04961.7  Formiminotransferase-cyclodeaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.9   0.00025      0.25      22     114 ..       5     100 ..       2     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00025
   PF04961.7  22 vaAlvgalgaALvsMVanlTi....gkkkyeeveeelkelleeaeklreelleladeDaeaFnevmaayklPketeeekaareeaiqealkeAaevP 114
                  aA+  a++aA  +M  ++T+    +kk+ e++e+e k+  e+++++ +   + ++  +   + +ma++k P +t+ e+++++++ ++   +++e P
  MMETSP0890-20130614|6023_1   5 TAAAGTAMSAAGDTMQ-RFTTkksdEKKEIENMETEDKTKKERLKAFVDASRASVETASTRLSGLMASMKSPESTTGESKEDSTENDSTKDKSTEPP 100
                 4555566666655554.55551222566777777788888999999999999999999999999*******************99999999999987 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   4.5       1.2   1.2e+03      24      60 ..      20      56 ..       8      98 .. 0.70
   2 ?   11.0   0.1   0.00029      0.28      34     111 ..      76     153 ..      55     155 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.2
   PF13863.1 24 erkeeelkereeelekkqeelqeslikfnkflkdnea 60
                +r + + + +++e+e ++ e + ++++ + f+  + a
  MMETSP0890-20130614|6023_1 20 QRFTTKKSDEKKEIENMETEDKTKKERLKAFVDASRA 56
                4455555555555555555555555555555555555 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00029
   PF13863.1  34 eeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekleeyqkYe 111
                 e+   +++e   e+    +k ++     r  a+++a +   + ke++ e+++lk+q+++l+   + l +++ +++k++
  MMETSP0890-20130614|6023_1  76 ESTTGESKEDSTENDSTKDKSTEPPPTSRLTALRSAMATLGQWKERTDEVAELKKQISNLNLLVASLSDRIVTLEKHN 153
                 5555555555555555555555556666778999999999999************************99999998886 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.35   3.4e+02      30      55 ..      29      54 ..      15      64 .. 0.80
   2 ?    0.2   0.4      0.92   8.9e+02      52      67 ..      88     101 ..      58     101 .. 0.54
   3 ?    9.7   0.0   0.00097      0.95      25      59 ..     123     157 ..     102     161 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.35
   PF04102.7 30 qqkeidrlqrqlrllaerlkeleess 55
                 +kei++++ + +  +erlk+  + s
  MMETSP0890-20130614|6023_1 29 EKKEIENMETEDKTKKERLKAFVDAS 54
                57899999999999999999988554 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.92
   PF04102.7  52 eessneaseaeeepPP 67 
                 e + +  +++  epPP
  MMETSP0890-20130614|6023_1  88 E-NDS-TKDKSTEPPP 101
                 1.221.2223336666 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00097
   PF04102.7  25 evvaeqqkeidrlqrqlrllaerlkeleessneas 59 
                 ++vae +k+i++l+  ++ l++r+  le+  n+++
  MMETSP0890-20130614|6023_1 123 DEVAELKKQISNLNLLVASLSDRIVTLEKHNNIEP 157
                 679***********************996655533 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.6     0.021        20      57     118 ..      25      83 ..       1     115 [. 0.62
   2 ?    6.1   0.2    0.0048       4.7     122     154 ..     119     151 ..     102     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.021
   PF04582.7  57 klsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslq 118
                 k sd + +++++     + k++ + l++ v a + sv++ s+ l++l    ++ +++  + +
  MMETSP0890-20130614|6023_1  25 KKSDEKKEIENME---TEDKTKKERLKAFVDASRASVETASTRLSGLMASMKSPESTTGESK 83 
                 2222222222222...2345556677788888888888888888888777666666555444 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0048
   PF04582.7 122 danstdisnlksdvsanglnitdleervksles 154
                 +  + ++++lk ++s   l +++l +r+ +le 
  MMETSP0890-20130614|6023_1 119 KERTDEVAELKKQISNLNLLVASLSDRIVTLEK 151
                 456778999999999999999999999999886 PP

>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.2    0.0059       5.7      40     162 ..      25     154 ..      18     157 .. 0.63
   2 ?    5.4   0.1     0.019        19      40      94 ..     117     171 ..     109     181 .] 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0059
   PF03234.9  40 kreqrkkeieelekelkinkkllervdkllselkeeeelssekvlkklneeadkedka.......sveeeeeeqpkynemledLldqvkdevdekkaaklieelkkhrkklkkeekelekkleelekeek 162
                 k+++ kkeie++e+e k++k++l+      ++  e++++  + ++ ++++++ ++ ++        ++++++  p+ +  l++L + + +  + k+ ++++ elkk+ + l+ +  +l+ +  +lek+++
  MMETSP0890-20130614|6023_1  25 KKSDEKKEIENMETEDKTKKERLKAFVDASRASVETASTRLSGLMASMKSPESTTGESkedstenDSTKDKSTEPPPTSRLTALRSAMATLGQWKERTDEVAELKKQISNLNLLVASLSDRIVTLEKHNN 154
                 5555666666666666555555554433333333333444456666666655544444455555444555566677888888888888888888888999999999999999999998888888888765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.019
   PF03234.9  40 kreqrkkeieelekelkinkkllervdkllselkeeeelssekvlkklneeadke 94 
                 + ++r+ e +el+k+++  + l++ ++ ++  l+++++ +   +  ++n +++  
  MMETSP0890-20130614|6023_1 117 QWKERTDEVAELKKQISNLNLLVASLSDRIVTLEKHNNIEPPPLPATINPNEQDP 171
                 6689999***************************999998877777777665433 PP

>> PF04316.8  Anti-sigma-28 factor, FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.099        97      17      35 ..      24      49 ..       3      55 .. 0.70
   2 ?    8.0   0.3    0.0025       2.4      21      39 ..     116     134 ..      57     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.099
                ..........TGHHHCSHHHHHHHHH CS
   PF04316.8 17 ta.......letqetvraaKVeelKa 35
                t+       +e++et ++ K e+lKa
  MMETSP0890-20130614|6023_1 24 TKksdekkeIENMETEDKTKKERLKA 49
                44454554468999999999999997 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0025
                 GHHHCSHHHHHHHHHHHH- CS
   PF04316.8  21 tqetvraaKVeelKaaIad 39 
                  q + r++ V+elK++I++
  MMETSP0890-20130614|6023_1 116 GQWKERTDEVAELKKQISN 134
                 56678999*********87 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.4    0.0053       5.2     117     217 ..      25     131 ..      17     156 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0053
   PF14362.1 117 kqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGt..........ggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankr 217
                 k ++++++ ++++++ +++k+++l+a ++a +a +++a++++  +++ +++ +++t          ++t+++ + p  ++  +al +a a l ++k++ ++++ael+  k+
  MMETSP0890-20130614|6023_1  25 K-KSDEKKEIENMETEDKTKKERLKAFVDASRASVETASTRLSGLMASMKSPESTTgeskedstenDSTKDKSTEPPPTSRLTALRSAMATLGQWKER-TDEVAELK--KQ 131
                 4.4455556666666699********************************999999777777777777777777777777777777777777777777.55555555..33 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.7    0.0098       9.5      54     149 ..      34     131 ..      17     156 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0098
   PF08432.5  54 daeaeeakkkkkelkeeiekvkkeyeekqkakkekkkkk...kekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldelkprkyaLhke 149
                 ++ ++e k+kk++lk  ++  ++ +e++ ++ +  ++++   + +  e +++++++d++++k++e+ + ++ ++l+++ + +  + +e + ++ +L+k+
  MMETSP0890-20130614|6023_1  34 ENMETEDKTKKERLKAFVDASRASVETASTRLSGLMASMkspESTTGESKEDSTENDSTKDKSTEPPPTSRLTALRSAMA-TLGQWKERTDEVAELKKQ 131
                 445677789999999999999******99999999998854322222333334444455566666666666666655554.445555555555555554 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.0     0.033        32      45     116 ..      23      94 ..      16     119 .. 0.60
   2 ?    4.3   0.1     0.043        42      34      71 ..     125     162 ..     116     181 .] 0.67

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.033
   PF08232.7  45 enlkedLkrrvkmLekalkqeraklkslkagveses..............kqeskssaeeeeleekkdeesessakdekelkksre 116
                 +  k+d k++++ +e++ k ++++lk+   +++++               k              + ++ + +s++d++e +++++
  MMETSP0890-20130614|6023_1  23 TTKKSDEKKEIENMETEDKTKKERLKAFVDASRASVetastrlsglmasmK--------------SPESTTGESKEDSTENDSTKD 94 
                 566889999999999999999999998777777666667777777665432..............222222222222222222111 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.043
   PF08232.7  34 IakLeGerrglenlkedLkrrvkmLekalkqeraklks 71 
                 +a+L+ +  +l+ l  +L  r+  Lek ++ e   l +
  MMETSP0890-20130614|6023_1 125 VAELKKQISNLNLLVASLSDRIVTLEKHNNIEPPPLPA 162
                 78888888888888889999999999988766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1432  (0.10474); expected 273.4 (0.02)
Passed bias filter:                      706  (0.0516384); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 586.14
//
Query:       MMETSP0890-20130614|6022_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-27   96.0   0.0    3.3e-26   91.5   0.0    2.2  2  PF02515.12 CoA-transferase family III
  ------ inclusion threshold ------
       0.13   11.4   0.0       0.24   10.5   0.0    1.3  1  PF12237.3  Phosphorylated CTD interacting factor 1 WW domain


Domain annotation for each model (and alignments):
>> PF02515.12  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.012        82     162     183 ..      10      31 ..       3      38 .. 0.79
   2 !   91.5   0.0   4.8e-30   3.3e-26       2     141 ..     184     326 ..     183     334 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.012
  PF02515.12 162 paaapyglyrtadGrwvaiaal 183
                 + ++  ++y+++dGr +++ ++
  MMETSP0890-20130614|6022_1  10 TVNPTRKAYTCGDGRSIFLHGG 31 
                 5677889**********99765 PP

  == domain 2    score: 91.5 bits;  conditional E-value: 4.8e-30
  PF02515.12   2 alDlkteeGrallkrLladaDVlienfrpgvlerlgldyealrainprliyvsisgfgqdgpyadrpgyDlvvqalsGllsltgepagepPvrvglpiaDiatGllaaaavlaAllerertGe......Gqrvdvslleaalalla 141
                  l+l+t++++++l +Ll+ aDVli++++ gvl+r+g+d+++l    p+liy+++s +g+ gp+a+++g+  +++ ++G+ ++   ++++  +   ++ +D++tG l a+av+ Al +r++  +      G  v vsl ++a ++++
  MMETSP0890-20130614|6022_1 184 HLNLETDQDKERLWDLLTVADVLIDGYTSGVLARFGFDDDSLFTKCPHLIYLRVSCYGHIGPWAKHKGFQQNANFATGVGTI---EDEQLLCYQLTSQVDYTTGFLGAIAVIVALTKRQQAATnynkvlGFKVYVSLCQTATWMAK 326
                 59*****************************************************************************999...455478999999*******************999755434555677788888888877765 PP

>> PF12237.3  Phosphorylated CTD interacting factor 1 WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.5e-05      0.24     106     143 ..      99     137 ..      90     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.5e-05
   PF12237.3 106 evnPPFveelmdaaaehleelL.eaekskealsfvvivp 143
                  + PPF+ e+++   ++ +++L + +ks+++ls ++++ 
  MMETSP0890-20130614|6022_1  99 AALPPFCLEIVQSNKSQNKNFLrILQKSTRPLSDIIVID 137
                 567***********9999999986788*******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.62
# Mc/sec: 1488.06
//
Query:       MMETSP0890-20130614|6025_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   56.0   0.0    5.8e-15   55.0   0.0    1.5  1  PF13884.1  Chaperone of endosialidase
  ------ inclusion threshold ------
      0.018   14.9   1.6      0.039   13.8   1.1    1.6  1  PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
      0.029   12.4   0.0      0.029   12.4   0.0    1.1  1  PF05911.6  Plant protein of unknown function (DUF869)
      0.034   13.6   0.3        1.5    8.4   0.0    2.5  3  PF02244.11 Carboxypeptidase activation peptide
       0.36   10.0   3.0       0.14   11.4   0.3    1.5  2  PF10422.4  Monopolin complex subunit LRS4
        2.8    7.3  10.9         37    3.7   7.5    2.6  1  PF04156.9  IncA protein
        7.4    6.5  11.5         10    6.1   0.1    3.7  4  PF04508.7  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> PF13884.1  Chaperone of endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0     3e-18   5.8e-15       1      58 []      54     107 ..      54     107 .. 0.94

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3e-18
   PF13884.1   1 SDrrlKtnIreledalakvlklrpvtYrykdesirkskdsgrreyGfIAQeveavlpe 58 
                 SD rlK+nI++le+  +++l++ +v+Y++ +    ++  ++ +++GfIAQev+ ++pe
  MMETSP0890-20130614|6025_1  54 SDVRLKRNITSLESRSERLLEIHGVSYQWIN----ETRFDNSTHFGFIAQEVARIFPE 107
                 9****************************86....4657788***************8 PP

>> PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.1     2e-05     0.039      21     101 ..     134     218 ..     130     221 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2e-05
   PF10473.4  21 lLkdkvenLErELelseenqelvileaenskaevetLktkieemaeelkdLeldLvsvrsekenLakelqekq....ervseLek 101
                  L  +ve+LE E+ + ++  +    e+  +k  ve+Lk+ +      ++ L+ dL  +  + + L ++lq        r+++Le+
  MMETSP0890-20130614|6025_1 134 RLYRRVESLEGEIIVEKKRSDSFQNELSGTKIYVESLKEMLYGAMAYIESLKEDLAITNRNLDLLRRDLQSSHrsyeTRIENLES 218
                 57889**********************************99888889**********************9764112146666665 PP

>> PF05911.6  Plant protein of unknown function (DUF869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05     0.029     584     649 ..     122     211 ..      30     221 .] 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   PF05911.6 584 d........................evktaeekstleeletlklekeklevelskckedleesklklketekkleelkselkaaeesksl 649
                 d                         v+++ ++s ++el   k  +e+l+  l+ + + +e+ k  l  t+++l  l+++l+++++s + 
  MMETSP0890-20130614|6025_1 122 DaigpllveafrrlyrrveslegeiIVEKKRSDSFQNELSGTKIYVESLKEMLYGAMAYIESLKEDLAITNRNLDLLRRDLQSSHRSYET 211
                 155555555555555555555555566777778888888888888888888888888888888888888888888888888887777553 PP

>> PF02244.11  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.1   6.1e+03      49      62 ..      70      83 ..      68      85 .. 0.79
   2 ?    2.7   0.0     0.047        91      35      60 ..     143     168 ..     136     172 .. 0.85
   3 ?    8.4   0.0   0.00075       1.5      40      70 ..     190     220 ..     185     221 .] 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.1
                HHHHHHTT-EEEEE CS
  PF02244.11 49 ealLeqngisyevl 62
                e+lLe +g+sy+ +
  MMETSP0890-20130614|6025_1 70 ERLLEIHGVSYQWI 83
                67899999999865 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.047
                 EEEEEE-GGGHHHHHHHHHHTT-EEE CS
  PF02244.11  35 pvdvmVpphkladfealLeqngisye 60 
                 + +++V ++ +++f++ L   +i  e
  MMETSP0890-20130614|6025_1 143 EGEIIVEKKRSDSFQNELSGTKIYVE 168
                 6789**************99999776 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00075
                 E-GGGHHHHHHHHHHTT-EEEEEES-HHHHH CS
  PF02244.11  40 VpphkladfealLeqngisyevliedvqeli 70 
                 +   +l+ +++ L++++ sye  ie++++++
  MMETSP0890-20130614|6025_1 190 ITNRNLDLLRRDLQSSHRSYETRIENLESQL 220
                 556677888999****************998 PP

>> PF10422.4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.86   1.7e+03     224     249 .]      45      70 ..      32      70 .. 0.76
   2 ?   11.4   0.3     7e-05      0.14      39     106 ..     148     220 ..     130     221 .] 0.84

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.86
                 XXXXXXXXXXXXXXXX.XXXXXXXXX CS
   PF10422.4 224 sflletiqptkstlrrsisaLkkrnd 249
                 +  ++ + ++ ++l+r i +L +r++
  MMETSP0890-20130614|6025_1  45 IAATSYSTTSDVRLKRNITSLESRSE 70 
                 45566777888899999999988875 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 7e-05
                 -----XXXXXXX..--------------.....---------------------------------------- CS
   PF10422.4  39 ldalktnatdselqnekltdEklllqeQ.....inqLnsdlqiqkseneklrklnKdqkalleSklsskesev 106
                 ++ ++ ++ ++el++ k+  E l +        i++L  dl i +++ + lr+        +e ++++ es++
  MMETSP0890-20130614|6025_1 148 VEKKRSDSFQNELSGTKIYVESLKEMLYgamayIESLKEDLAITNRNLDLLRRDLQSSHRSYETRIENLESQL 220
                 45667788999***********99987788999*****************999888888899******99998 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.5     0.019        37      21     148 ..       2     211 ..       1     221 [] 0.70

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.019
   PF04156.9  21 sGiallvlfasslgvlisallgivliAlg..vvLlalgllllllkapvqseedekiee.................................................................................srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeire 148
                 +G+++ v ++ s g+++sa+ +i++ A+   + L+a g+ + ++ a+ + +  ++++                                                                                   +l++e++ ++++ + ++ el+    ++++l++ l     + e+l+e+l   + +l+ l++++++  ++++ 
  MMETSP0890-20130614|6025_1   2 AGVITAVSTIES-GGVFSAAGIISSSAITgtSTLFANGITSTSAIAATSYSTTSDVRLkrnitslesrserlleihgvsyqwinetrfdnsthfgfiaqevarifpeivyedesgwrslqidaigpllveafrrlyrrvESLEGEIIVEKKRSDSFQNELSGTKIYVESLKEMLYGAMAYIESLKEDLAITNRNLDLLRRDLQSSHRSYET 211
                 577777777755.444444444444444335899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999666666666666666666666666666666666666666666666655555555555555554444333332 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.6    0.0064        12       5      16 ..      57      68 ..      57      71 .. 0.93
   2 ?   -1.9   0.1       1.9   3.8e+03       8      14 ..     137     143 ..     134     146 .. 0.79
   3 ?   -1.5   0.0       1.4   2.7e+03      10      18 ..     181     189 ..     181     191 .. 0.81
   4 ?    6.1   0.1    0.0052        10       8      17 ..     211     220 ..     209     221 .] 0.93

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0064
   PF04508.7  5 rlRrkIsdLekq 16
                rl+r+I++Le++
  MMETSP0890-20130614|6025_1 57 RLKRNITSLESR 68
                89********86 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.9
   PF04508.7   8 rkIsdLe 14 
                 r++++Le
  MMETSP0890-20130614|6025_1 137 RRVESLE 143
                 7899998 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.4
   PF04508.7  10 IsdLekqLs 18 
                 I++L+++L+
  MMETSP0890-20130614|6025_1 181 IESLKEDLA 189
                 788999886 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0052
   PF04508.7   8 rkIsdLekqL 17 
                 ++I++Le+qL
  MMETSP0890-20130614|6025_1 211 TRIENLESQL 220
                 79*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|6026_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|6021_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   46.9   0.1    3.5e-12   46.0   0.1    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    1.2e-10   40.9   0.0    1.9e-10   40.3   0.0    1.3  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    0.00014   21.8   0.0    0.00034   20.6   0.0    1.7  2  PF02798.15 Glutathione S-transferase, N-terminal domain
    0.00034   20.6   0.0    0.00067   19.7   0.0    1.5  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    0.00046   20.0   0.0     0.0014   18.4   0.0    1.9  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1   1.3e-15   3.5e-12      32      95 .]     184     250 ..     180     250 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.3e-15
                 HHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHH...HHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
  PF00043.20  32 kvlevlealeeelsgkkylvGdkltlADialfpale...wlqrldgnfleeefPklkawlkriaarp 95 
                 +v++ l++l+++l++k +++Gd++++AD+a+ p++    +++  ++++  +++ +l+aw+kr++ rp
  MMETSP0890-20130614|6021_1 184 EVKRELDVLDKHLADKVWICGDEYSIADMAIWPWIYcikHFYKAQQFVQLDSYINLMAWYKRVEDRP 250
                 7999********************************65444444444449**************998 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   7.1e-14   1.9e-10       4      69 .]     178     245 ..     175     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 7.1e-14
                 HS--GGGTT-THGGG------SS.-------HHHHHHHHHHHHHHHHH---..---TT----HHHHHH CS
   PF13410.1   4 leraraqlraaLdaleahLadgpfllGdrpslaDialapflvrldaagpgl..direayPnlrawler 69 
                 ++r+  ++++ Ld+l++hLad+++++Gd+ s+aD a++p++  ++  +  +    +++y nl aw++r
  MMETSP0890-20130614|6021_1 178 INRFTMEVKRELDVLDKHLADKVWICGDEYSIADMAIWPWIYCIKHFYKAQqfVQLDSYINLMAWYKR 245
                 678888999******************************998776665544115569*********98 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07   0.00034      17      76 .]      65     130 ..      53     130 .. 0.83
   2 ?   -3.9   0.0         5   1.4e+04      27      38 ..     168     179 ..     167     188 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.2e-07
                 HHHH....HTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEET...TTEEEESHHHHHHHHHH CS
  PF02798.15  17 illa....ekgveyeivrvdfeagegkspewlklnpkigrvPaledg...dglklteSlAIarYlar 76 
                 +ll+     kg+ey+ +++d+ +  + s ++++ np+ +++Pa+ d        ++eS  I++Y+a+
  MMETSP0890-20130614|6021_1  65 MLLEelvdMKGIEYDAHKIDIFDLDQFSTGFCQVNPN-SKIPAMYDYdysPAVRVFESCSILKYIAE 130
                 4454444489**********95555555*********.********98887799***********96 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 5
                 EEEEEGTTCCHC CS
  PF02798.15  27 eivrvdfeageg 38 
                 +++++++e g++
  MMETSP0890-20130614|6021_1 168 KYAPINIEYGIN 179
                 566666666655 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.4e-07   0.00067      18      72 ..      72     133 ..      52     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.4e-07
                 HH----EEE----...TTTTHHHHHHH-TT--SSEEE-.-...--EEESHHHHHHHHHHH-- CS
   PF13417.1  18 eekglpyelvevt...pgkkrpellalnpkgkvPvLed.d...gevltdSlvIieyLeerfp 72 
                   kg++y  ++++    ++ +  + ++np+ k+P+++d d      +++S +I++y+ e+++
  MMETSP0890-20130614|6021_1  72 DMKGIEYDAHKIDifdLDQFSTGFCQVNPNSKIPAMYDyDyspAVRVFESCSILKYIAEKYN 133
                 4689**999999843344448899************853564455899**********9986 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.2e-07    0.0014      14      69 ..      73     130 ..      58     131 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.2e-07
                 H----EEEEEEH....TTSHHHHHHHH------SEEE.----...EEESHHHHHHHHHH CS
   PF13409.1  14 lkgledeisvvplepkgfekseellalsprgtVPvLwdkdgt...vineSseIlrylne 69 
                  kg+e++   + + ++  ++s  + +++p+ ++P++ d d +    ++eS  Il+y++e
  MMETSP0890-20130614|6021_1  73 MKGIEYDAHKI-DIFDLDQFSTGFCQVNPNSKIPAMYDYDYSpavRVFESCSILKYIAE 130
                 47***999888.44556677788***************9888887788*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.71
# Mc/sec: 955.17
//
Query:       MMETSP0890-20130614|6027_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-15   55.0   0.1    1.6e-14   53.7   0.1    1.7  1  PF13365.1  Trypsin-like peptidase domain
    2.8e-08   33.5   0.0    5.5e-08   32.5   0.0    1.4  1  PF00089.21 Trypsin
    2.4e-07   30.4   0.0    5.7e-07   29.2   0.0    1.7  1  PF13180.1  PDZ domain
    0.00038   20.4   0.0     0.0033   17.4   0.0    2.4  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   4.7e-18   1.6e-14       1     120 []      61     203 ..      61     203 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 4.7e-18
                 xxxxxx..xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x.xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13365.1   1 gtGfvv..nkdg...lilTnaHvveparkgkghrasevrvvsldgrkedhkakvvkvsaeqlDlAllqve...............................sedivgkggvkagsksssskqstkgnrvli..........i.tdaathpGsSGgPvldsdGrvvGl 120
                 g+Gfvv  +  +   +i+Tn Hvv+         a+e+r+ +++g ++    + ++ sa++ DlAll ve                                              +  ++   ++ + +           +  d a+++G+SGgP ld++G v G+
  MMETSP0890-20130614|6027_1  61 GSGFVVrlS--EeklVIVTNQHVVA--------SATEIRLRKYGGVQKY--RAMLALSAHTADLALLDVEdanfwkdmaplklgalprlyenvvclgfsfpG------------ENACVTRGIVSRVDTMSyvrgaeellvLqVDSAVNSGNSGGPALDDSGCVAGV 203
                 8*****653..4447**********........89************99..9*************************************6555555554432............44444444444444444455555554346*********************997 PP

>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.6e-11   5.5e-08       9     214 ..      46     222 ..      42     228 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.6e-11
                 TTSSTTEEEEEEETTEEEE-EEEE...ETT.EEEEEGGGGTSGGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTSBESBCBCEEEEEBEHHHHHHTTTTTSTTTEEEEESTSSSB---------EEEEETEB---BEEETTCCBTTB-EEEEEGG CS
  PF00089.21   9 kgsfpwqvslsvksgkhlCgGsli...sen.wvLTAaHcvknasdvkvvlgehnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekgksdtlqevevpvvsretcksayggkvtenmlcagakggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgvytkvs 214
                 ++ +pw+v+l+ +    + +G+++    e+  ++T++H+v +  + +++     l+k+ g ++++ +         ++ t   D+all ++   ++++ + p++l a    +   + ++  G+  + e+       +v+  +vsr +  s+ +g  +   l+++     + + G+SGGP++ ++g ++G+ + ++  + + ++g+ ++ +
  MMETSP0890-20130614|6027_1  46 DYTQPWSVFLEEEC---TGSGFVVrlsEEKlVIVTNQHVVAS--ATEIR-----LRKYGGVQKYRAMLA------LSAHT--ADLALLDVEDA-NFWKDMAPLKLGA---LPRLYENVVCLGFSFPGENA------CVTRGIVSRVDTMSYVRGAEELLVLQVDS----AVNSGNSGGPALDDSGCVAGVAFSSYAGSAD-NIGYVIPTA 222
                 67899999999855...45677763323446888*******8..55553.....445666444444444......55666..8********98.*************...33566778888999888888......66666666665555444443334455555....****************999998888444444.478888776 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.7e-10   5.7e-07      12      82 .]     267     357 ..     255     357 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.7e-10
   PF13180.1  12 n..........trgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlk..........slllkkkpGdtvkltvlRdgkkktvevkl 82 
                            ++gv +  V+  +  + ag+ +GDi+l++d ++v ++ ++           +l+++k++G++++l++lRdg  +++ v+l
  MMETSP0890-20130614|6027_1 267 AfrkrkqmsldQTGVCINRVARLGCGHAAGICVGDILLSIDSIAVANDGTVPlrnservgceHLISSKRIGTQISLQILRDGIPLNLHVTL 357
                 255555566667899999999999999******************77744444455566676999******************99999997 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.6e-07    0.0033      23      59 ..     269     313 ..     255     345 .. 0.75
   2 ?   -0.6   0.0      0.39   1.3e+03      50      63 ..     457     470 ..     455     473 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 9.6e-07
                 S........SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTT CS
  PF00595.19  23 r........dkgifvsevvpggaaeagglkeGDkIlsvNgvdven 59 
                 r        ++g+ +++v + g  +a+g+++GD++ls++   v+n
  MMETSP0890-20130614|6027_1 269 RkrkqmsldQTGVCINRVARLGCGHAAGICVGDILLSIDSIAVAN 313
                 45556667789***************************9854443 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.39
                 EEETTEBGTTSHHH CS
  PF00595.19  50 lsvNgvdvenvshd 63 
                  ++Ng++v n++h+
  MMETSP0890-20130614|6027_1 457 RALNGTPVINLAHL 470
                 679********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1021  (0.0746782); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.15u 0.42s 00:00:01.56 Elapsed: 00:00:00.91
# Mc/sec: 1635.32
//
Query:       MMETSP0890-20130614|6034_1  [L=908]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-144  482.0  14.2   1.9e-144  481.7   9.8    1.1  1  PF01602.15 Adaptin N terminal region
    4.2e-30  104.7   4.6    1.6e-29  102.8   0.1    3.4  3  PF12717.2  non-SMC mitotic condensation complex subunit 1
    4.2e-20   71.7  10.7    4.8e-08   33.0   0.5    5.6  5  PF13646.1  HEAT repeats
    1.1e-18   67.0   0.0    3.2e-18   65.5   0.0    1.9  1  PF09066.5  Beta2-adaptin appendage, C-terminal sub-domain
    2.1e-11   42.8   6.7     0.0016   18.2   0.0    5.9  6  PF02985.17 HEAT repeat
      5e-06   26.8   4.2       0.99    9.9   0.0    6.2  6  PF13513.1  HEAT-like repeat
    0.00026   20.5   3.8      0.014   15.0   0.0    4.1  5  PF00514.18 Armadillo/beta-catenin-like repeat
     0.0012   17.8   0.2     0.0038   16.2   0.0    1.9  2  PF04826.8  Armadillo-like
     0.0013   18.0   2.0     0.0036   16.6   0.4    2.5  2  PF12783.2  Guanine nucleotide exchange factor in Golgi transport N-terminal
     0.0059   15.4   1.2      0.013   14.3   0.1    2.1  2  PF12719.2  Nuclear condensing complex subunits, C-term domain
     0.0073   16.0   1.7        2.2    8.1   0.0    4.2  3  PF10363.4  Protein of unknown function (DUF2435)
     0.0074   16.4   0.1      0.021   15.0   0.1    1.8  1  PF02883.15 Adaptin C-terminal domain
  ------ inclusion threshold ------
      0.082   12.1   1.3        1.8    7.7   0.0    3.3  4  PF12348.3  CLASP N terminal
        0.6   10.6   6.0         13    6.5   0.1    4.8  4  PF03130.11 PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.7   9.8    2e-147  1.9e-144      32     521 ..       1     507 [.       1     509 [. 0.97

  Alignments for each domain:
  == domain 1    score: 481.7 bits;  conditional E-value: 2e-147
  PF01602.15  32 ialGedvsflffevvklvaskdfelKrlvYlylellaeesedlallvtnslqkDlkspnqlirglALrvLssirvpelaedladaikkllkdrspyVrkkAalailklykkdpdlvrke.lieeikellsdkdpgVvlaAvalleei..kkndrlllkllpklvrrLcnlltelnpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvkliv..............elapkne....livlavnaLvrllsskdenlryvaLrnlnkilekekavqhkdlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvsevadeefksklvkaIgrlaekfatdaewvldvllellslsgeyvkdeivevirdiiqkvpelhekivekLaellekiespearaaaiWllGeygelventesasdllrslaekfvlesekvklailtalvKlsltspdketqeeliqlvlslatqdss..dlelrdRaveylqllss 521
                 ++ G+dvs lf +vv++++++++elK+lvYlyl ++a+++++l+ll++n++ kD+ +pn+l+r+lA+r++++irv++++e+l+++++k l+d++pyVrk+Aa++++kly+++p+lv +  +++ + +l+sd++p Vv++Ava+l ei  + +d++ l+l+ +  ++L  +l+e+++w+qv i++ l ++ +++ +++   +++e+++++lq++n aV+l++vk+i+              ++++++e    ++++++ +Lv+ll s  e + yvaLrn+n i++ e+++ ++++k+f++k++d+++++l++l+++++lv+e+N+++++ eLk+y++ev d +f++ +v+aIgr+a+k ++ a+ +++vllel++++ +yv++e+v v  di++++p+++e i+++L+e le++++p+a+a++iW++Gey++++en   a +ll+ ++ +f +e++ v+l+++ta+vKl+l++pdk++  e++q+vl lat+d+s  +++lrdR + y++lls 
  MMETSP0890-20130614|6034_1   1 MTVGKDVSMLFTDVVNCIQTSNIELKKLVYLYLINYAKSQPELILLSVNTFVKDAADPNPLVRALAIRTMGCIRVERIIEYLCEPLQKTLRDEDPYVRKTAAMCVAKLYDIQPELVIDRgFVDALRDLVSDPNPTVVANAVAALNEIaeTSSDDSVLELSTSALQKLLAALNECTEWGQVSILDALAKYQPTDAKDA--LSVIERVMPRLQHANSAVVLSAVKVILrymktcyfhtenvnSIEDDTEtlnsIRKKLAPPLVTLLNSDLEEITYVALRNINLIVQAEPKILENEVKVFFCKYNDPIYVKLEKLEIMIRLVSERNIDQVLLELKEYAQEV-DVDFVRRAVRAIGRCAIKLEKAAQRCINVLLELIQTKINYVVQESVIVTTDIFRRYPQKYEAIIATLCENLESLDEPQAKASMIWIIGEYADEIEN---ADELLENFIDSFEDETAPVQLQLVTAAVKLFLKQPDKTSAHEMVQKVLGLATDDASfgNPDLRDRGFVYWRLLSA 507
                 689************************************************************************************************************************************************9777788877****************************************..88*************************99999999777776444444477879*************99999********************************************************************.************************************************************************************************...****************************************************88866699************985 PP

>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.5   3.4e+03      64     104 ..      10      52 ..       8      53 .. 0.78
   2 !  102.8   0.1   1.7e-32   1.6e-29       1     177 [.      59     227 ..      59     228 .. 0.93
   3 ?    1.8   0.0      0.17   1.7e+02      23      61 ..     433     471 ..     375     488 .. 0.52

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.5
   PF12717.2  64 lflemlkllaDedeeiralAelffsellkkknpnll...ynllp 104
                 lf +++ +++ ++ e ++l  l + +++k+ +p+l+   +n+++
  MMETSP0890-20130614|6034_1  10 LFTDVVNCIQTSNIELKKLVYLYLINYAKS-QPELIllsVNTFV 52 
                 678888999999999999999999999997.8888856666665 PP

  == domain 2    score: 102.8 bits;  conditional E-value: 1.7e-32
   PF12717.2   1 dpliranaiialgDLcvrypnlvdpyleklyacLkdedalvRktallvlshLiledmvKvkgqlflemlkll.aDedeeiralAelffsellkkknpnll....ynllpelisvLnnctehelveeldeerrkkiyrfllefikk.....dkqkeslveklcsrllaanveadakvlsdilvilsll 177
                 +pl+ra ai+++g  c+r++ ++++++e+l + L+ded++vRkta++++++L+ +    v +++f++ l+ l +D++++++a+A ++++e++++++   +     + l +l+++Ln+cte+++v              +l+ ++k      k++ s++e+++ rl++an   +a+vls ++vil  +
  MMETSP0890-20130614|6034_1  59 NPLVRALAIRTMG--CIRVERIIEYLCEPLQKTLRDEDPYVRKTAAMCVAKLYDIQPELVIDRGFVDALRDLvSDPNPTVVANAVAALNEIAETSSDDSVlelsTSALQKLLAALNECTEWGQV-------------SILDALAKyqptdAKDALSVIERVMPRLQHAN---SAVVLSAVKVILRYM 227
                 689**********..*********************************************************9*********************9666666888999***************98.............466666666666899*****************...***********9877 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.17
   PF12717.2  23 vdpyleklyacLkdedalvRktallvlshLiledmvKvk 61 
                  d++le+++ +++de a v+ + ++   +L+l+   K  
  MMETSP0890-20130614|6034_1 433 ADELLENFIDSFEDETAPVQLQLVTAAVKLFLKQPDKTS 471
                 344455555555555566666666666666666555555 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   9.4e-10   9.2e-07       5      60 ..      52     110 ..      48     119 .. 0.82
   2 !   33.0   0.5   4.9e-11   4.8e-08       6      62 ..      88     162 ..      86     173 .. 0.68
   3 ?    6.3   0.1     0.011        11       1      59 [.     164     242 ..     164     278 .. 0.64
   4 !    9.1   0.1    0.0014       1.4      28      84 ..     321     383 ..     309     386 .. 0.66
   5 !   12.6   0.0   0.00011      0.11       2      74 ..     401     486 ..     400     490 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 9.4e-10
   PF13646.1   5 laaLekdpdpevraaaieaLgqlgseea....lpaLlelLkdsdpevRraAaeaLgklgd 60 
                 ++ +  dp+p vra ai+++g ++ e++     ++L + L+d+dp+vR++Aa++ +kl d
  MMETSP0890-20130614|6034_1  52 VKDA-ADPNPLVRALAIRTMGCIRVERIieylCEPLQKTLRDEDPYVRKTAAMCVAKLYD 110
                 5555.6***************9999988555577888888***************99865 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 4.9e-11
   PF13646.1   6 aaLekdpdpevraaaieaLg.......qlgseea......lpaLlelLkdsdpevRraAaeaLgklg...........dpe 62 
                 + L +d+dp+vr +a+++ +       +     +      ++aL++l +d++p v ++A+ aL++++           + +
  MMETSP0890-20130614|6034_1  88 KTL-RDEDPYVRKTAAMCVAklydiqpE-----LvidrgfVDALRDLVSDPNPTVVANAVAALNEIAetssddsvlelSTS 162
                 556.9***************55533331.....3444444**************************744432222222222 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.011
   PF13646.1   1 leaLlaaLekdpdpevraaaieaLgqlgseea......lpaLlelLkdsdpevRraAaeaLgkl...............g 59 
                 l++LlaaL ++  +  + ++++aL+++   +a      ++ +   L++ +++v  +A++++ ++               +
  MMETSP0890-20130614|6034_1 164 LQKLLAAL-NECTEWGQVSILDALAKYQPTDAkdalsvIERVMPRLQHANSAVVLSAVKVILRYmktcyfhtenvnsieD 242
                 57899999.666677799999****8776644444344666666669**********99876654555554444444331 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.0014
   PF13646.1  28 gseealpaLlelLkdsdpevRraAaeaLgklg......dpealpaLlklldddedavvreaaa 84 
                 + +++l +L e ++  d +  r A++a+g+++       ++++++Ll+l+++  + vv+e+++
  MMETSP0890-20130614|6034_1 321 NIDQVLLELKEYAQEVDVDFVRRAVRAIGRCAiklekaAQRCINVLLELIQTKINYVVQESVI 383
                 555666667777777777777788888887743333335777888888888777777777654 PP

  == domain 5    score: 12.6 bits;  conditional E-value: 0.00011
   PF13646.1   2 eaLlaaLekdpdpevraaaieaLgqlgse.....ealpaLlelLkdsdpevRraAaeaLgkl........gdpealpaLlkllddd 74 
                 + L+++Le+  +p+ +a+ i+++g++++e     e+l+  ++  +d+ + v+ + + a  kl        +  e ++  l l++dd
  MMETSP0890-20130614|6034_1 401 ATLCENLESLDEPQAKASMIWIIGEYADEienadELLENFIDSFEDETAPVQLQLVTAAVKLflkqpdktSAHEMVQKVLGLATDD 486
                 6799***99999************99998887788999999999****************99887654433466677777777776 PP

>> PF09066.5  Beta2-adaptin appendage, C-terminal sub-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   3.3e-21   3.2e-18       1     113 [.     789     905 ..     789     906 .. 0.94

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 3.3e-21
   PF09066.5   1 lvedgkldreeFeetWqslpesnkqeltlqlq.akvlnpesikekLqrnniftiAkgeeed..qqkllyfsakt..tngvlvlieliintgsskvqisvKsknpevaqlflqlvekiL 113
                 +++dg+++r++F e+W+s+++s  ++++++ +    +++++++ kLq+ + f++A++ +++  + ++ +fs kt   + + +l+el++++g ++++++vK++++ +a+l+ +++e+iL
  MMETSP0890-20130614|6034_1 789 FSPDGAVERSTFIEMWKSIDDSL-ETYSTVSDlPTGPSIDAASAKLQARRAFHVARRTVPNaqGTEVVFFSIKTlgPQPHHFLVELTFKAGLPACKVCVKTTSQPFANLAKTAIETIL 905
                 789*******************9.788888888999***********************99666799******966699**************************************9 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.006       5.9       7      25 ..      53      71 ..      48      73 .. 0.81
   2 !   18.2   0.0   1.6e-06    0.0016       2      28 ..      83     109 ..      82     111 .. 0.90
   3 !   15.0   0.0   1.7e-05     0.017       3      29 ..     123     149 ..     121     151 .. 0.90
   4 ?    0.3   0.0      0.95   9.3e+02       3      30 ..     202     229 ..     200     230 .. 0.82
   5 ?   -1.2   0.0       2.8   2.8e+03       2      17 ..     255     270 ..     254     282 .. 0.70
   6 ?   -2.6   0.0       8.1   7.9e+03       1      19 [.     436     454 ..     436     459 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.006
                HHHTSSSHHHHHHHHHHHH CS
  PF02985.17  7 kllnDpspeVReaAaeaLg 25
                k   Dp+p VR+ A++++g
  MMETSP0890-20130614|6034_1 53 KDAADPNPLVRALAIRTMG 71
                5567************998 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                 + +l+k l+D++p VR++Aa +++ l 
  MMETSP0890-20130614|6034_1  83 CEPLQKTLRDEDPYVRKTAAMCVAKLY 109
                 6789******************99886 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.7e-05
                 HHHHHHHTSSSHHHHHHHHHHHHHHHH CS
  PF02985.17   3 PlllkllnDpspeVReaAaeaLgalae 29 
                  +l  l +Dp+p V ++A+ aL ++ae
  MMETSP0890-20130614|6034_1 123 DALRDLVSDPNPTVVANAVAALNEIAE 149
                 67899********************98 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.95
                 HHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
  PF02985.17   3 PlllkllnDpspeVReaAaeaLgalaev 30 
                   ++  l++ +  V  +A++ + + ++ 
  MMETSP0890-20130614|6034_1 202 ERVMPRLQHANSAVVLSAVKVILRYMKT 229
                 56778899***********999887765 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 2.8
                 HHHHHHHHTSSSHHHH CS
  PF02985.17   2 lPlllkllnDpspeVR 17 
                  P+l++lln++ +e+ 
  MMETSP0890-20130614|6034_1 255 APPLVTLLNSDLEEIT 270
                 599******9876665 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 8.1
                 HHHHHHHHHTSSSHHHHHH CS
  PF02985.17   1 llPlllkllnDpspeVRea 19 
                 ll  ++  ++D+++ V  +
  MMETSP0890-20130614|6034_1 436 LLENFIDSFEDETAPVQLQ 454
                 6788999999*99888766 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.69   6.8e+02      39      53 ..      57      71 ..      50      73 .. 0.81
   2 !    9.9   0.0     0.001      0.99       3      54 ..      62     107 ..      60     108 .. 0.74
   3 ?    5.4   0.0     0.027        26      30      55 .]     122     147 ..     119     147 .. 0.89
   4 ?    1.1   0.0      0.61     6e+02      19      40 ..     244     265 ..     235     269 .. 0.83
   5 ?    4.6   0.0     0.046        45       5      42 ..     342     375 ..     340     384 .. 0.80
   6 ?   -0.9   0.0       2.6   2.5e+03      26      54 ..     396     425 ..     390     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.69
   PF13513.1 39 ddddeVReaAawALg 53
                d+++ VR++A+++ g
  MMETSP0890-20130614|6034_1 57 DPNPLVRALAIRTMG 71
                56669*******988 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.001
   PF13513.1   3 vRraAawaLGrlaggeprllepavpellpaLlelLeddddeVReaAawALgr 54 
                 vR+ A+++ G+++      +e +++ l ++L++ L+d+d+ VR++Aa + ++
  MMETSP0890-20130614|6034_1  62 VRALAIRTMGCIR------VERIIEYLCEPLQKTLRDEDPYVRKTAAMCVAK 107
                 8899999998866......555555666666699999999******977665 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.027
   PF13513.1  30 lpaLlelLeddddeVReaAawALgrl 55 
                 ++aL++l +d+++ V ++A+ AL ++
  MMETSP0890-20130614|6034_1 122 VDALRDLVSDPNPTVVANAVAALNEI 147
                 7899999999999*********9765 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.61
   PF13513.1  19 prllepavpellpaLlelLedd 40 
                  ++l+ + ++l p+L+ lL++d
  MMETSP0890-20130614|6034_1 244 TETLNSIRKKLAPPLVTLLNSD 265
                 677889999**********887 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.046
   PF13513.1   5 raAawaLGrlaggeprllepavpellpaLlelLedddd 42 
                 r A++a+    g+++  le a + ++  Llel++++ +
  MMETSP0890-20130614|6034_1 342 RRAVRAI----GRCAIKLEKAAQRCINVLLELIQTKIN 375
                 679****....688899999999999999999877655 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 2.6
   PF13513.1  26 vpellpaLlelLed.dddeVReaAawALgr 54 
                  +++++ L+e Le+ d+++ +++ +w +g+
  MMETSP0890-20130614|6034_1 396 YEAIIATLCENLESlDEPQAKASMIWIIGE 425
                 568999999999998999999999999885 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.3   2.2e+03      19      36 ..      88     105 ..      78     108 .. 0.79
   2 !   15.0   0.0   1.5e-05     0.014       4      40 ..     112     148 ..     110     149 .. 0.92
   3 ?   -3.0   0.0       7.1   6.9e+03      23      37 ..     151     165 ..     150     168 .. 0.84
   4 ?    3.6   0.0     0.058        56      15      33 ..     256     274 ..     254     275 .. 0.89
   5 ?   -2.4   0.0       4.4   4.3e+03      13      29 ..     362     379 ..     360     382 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.3
                 HHHC-SSHHHHHHHHHHH CS
  PF00514.18  19 qLLksgdeevqeeAawAL 36 
                 + L+++d+ v++ Aa ++
  MMETSP0890-20130614|6034_1  88 KTLRDEDPYVRKTAAMCV 105
                 568899********9775 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.5e-05
                 HHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18   4 nkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40 
                 + ++vi+ G v++L +L +++++ v+ +A++AL ++a
  MMETSP0890-20130614|6034_1 112 QPELVIDRGFVDALRDLVSDPNPTVVANAVAALNEIA 148
                 56789999*************************8887 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 7.1
                 -SSHHHHHHHHHHHH CS
  PF00514.18  23 sgdeevqeeAawALs 37 
                 s d++v+e ++ AL+
  MMETSP0890-20130614|6034_1 151 SSDDSVLELSTSALQ 165
                 88999***9999997 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.058
                 HHHHHHHC-SSHHHHHHHH CS
  PF00514.18  15 ppLvqLLksgdeevqeeAa 33 
                 ppLv LL+s+ ee++ +A+
  MMETSP0890-20130614|6034_1 256 PPLVTLLNSDLEEITYVAL 274
                 9*********999988876 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 4.4
                 HHHHHHHHHC.-SSHHHH CS
  PF00514.18  13 avppLvqLLk.sgdeevq 29 
                 ++ +L++L++ + +  vq
  MMETSP0890-20130614|6034_1 362 CINVLLELIQtKINYVVQ 379
                 7999****9954444444 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.9e-06    0.0038      25      89 ..      93     155 ..      79     173 .. 0.87
   2 ?   -2.4   0.1       1.8   1.8e+03      15      50 ..     364     399 ..     359     458 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.9e-06
   PF04826.8  25 edpliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnvenqk 89 
                 edp++ + a  +++ ++ y ++ +++ + g +  + +l+s++np+v  +a+ aln++++ + + +
  MMETSP0890-20130614|6034_1  93 EDPYVRKTA--AMCVAKLYDIQPELVIDRGFVDALRDLVSDPNPTVVANAVAALNEIAETSSDDS 155
                 799998866..7999*****************************************999877665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.8
   PF04826.8  15 ekllallestedpliqeialitlgnsaaysfnqdii 50 
                 + ll+l+++  + ++qe + +t  +   y+ + + i
  MMETSP0890-20130614|6034_1 364 NVLLELIQTKINYVVQESVIVTTDIFRRYPQKYEAI 399
                 678999999999999999999999999999887766 PP

>> PF12783.2  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   3.7e-06    0.0036      35     120 ..     209     300 ..     179     319 .. 0.84
   2 ?   -1.9   0.0       1.7   1.7e+03      87     121 ..     356     390 ..     342     398 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.7e-06
   PF12783.2  35 eerskllsLeliesiLenhgd.lflsse.....ehtellqlirqklcpsLlrnlasskfpvferslrifllLlkklrskLkleievflseli 120
                 ++    ++L+ ++ iL+  ++  f++++     + te l+ ir+kl p L+ +l+s   +++ + lr + l+++   ++L++e++vf+ + +
  MMETSP0890-20130614|6034_1 209 QHANSAVVLSAVKVILRYMKTcYFHTENvnsieDDTETLNSIRKKLAPPLVTLLNSDLEEITYVALRNINLIVQAEPKILENEVKVFFCKYN 300
                 46667788999999999888834665559999899********************999*****************************97655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.7
   PF12783.2  87 fpvferslrifllLlkklrskLkleievflselil 121
                  +  +r+++++l L+++  ++   e+ ++ ++++ 
  MMETSP0890-20130614|6034_1 356 EKAAQRCINVLLELIQTKINYVVQESVIVTTDIFR 390
                 55678899999999988888888888888877776 PP

>> PF12719.2  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   1.6e+03     256     288 ..     139     170 ..     126     180 .. 0.75
   2 !   14.3   0.1   1.3e-05     0.013      37     147 ..     334     466 ..     319     496 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.6
   PF12719.2 256 lavdilqeveqdeskekeekkalikaLskLkis 288
                  av  l+e+  ++s+++++  ++++aL+kL  +
  MMETSP0890-20130614|6034_1 139 NAVAALNEIA-ETSSDDSVLELSTSALQKLLAA 170
                 5678888994.4555557999999999999877 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.3e-05
   PF12719.2  37 rseeasirelglkCLglfsLldkklaeenlplllqafskg.deelkiialkalvDllllhgvelldseskeek......................tedvdsksllklllkalksespevqaiaaeglcKLllag 147
                 +  + +  +++++ +g +++  +k a+ ++ +ll+ ++ + +  +++ ++ + +D++  ++ ++     +  +                      +e +++++ll  ++  +++e + vq+ +++++ KL+l++
  MMETSP0890-20130614|6034_1 334 QEVDVDFVRRAVRAIGRCAIKLEKAAQRCINVLLELIQTKiNYVVQESVI-VTTDIFRRYPQKYEAIIATLCEnlesldepqakasmiwiigeyaDEIENADELLENFIDSFEDETAPVQLQLVTAAVKLFLKQ 466
                 666778889****************************6664888888777.78**********9999988555899*****************999999999***********99*9***************74 PP

>> PF10363.4  Protein of unknown function (DUF2435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0023       2.2      11      82 ..      53     118 ..      47     120 .. 0.76
   2 ?    3.5   0.1      0.06        59      12      43 ..     128     159 ..     118     230 .. 0.65
   3 ?   -1.8   0.0       2.7   2.6e+03       4      36 ..     435     467 ..     432     489 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0023
   PF10363.4  11 kslqdplvPvrahgLllLrrlvekksaedvadvpkilelllsqlkdedsfvYLnaikgLaalaevdpeevlk 82 
                 k+ +dp + vra ++ ++  +  ++       ++ + e l + l+ded++v   a  ++a+l +++pe v++
  MMETSP0890-20130614|6034_1  53 KDAADPNPLVRALAIRTMGCIRVER------IIEYLCEPLQKTLRDEDPYVRKTAAMCVAKLYDIQPELVID 118
                 5666666666666666665433333......36777888899*************************99986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.06
   PF10363.4  12 slqdplvPvrahgLllLrrlvekksaedvadv 43 
                  ++dp + v a++++ L+++ e++s+++v+++
  MMETSP0890-20130614|6034_1 128 LVSDPNPTVVANAVAALNEIAETSSDDSVLEL 159
                 45788888888888888888888884444333 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.7
   PF10363.4   4 ealkkalkslqdplvPvrahgLllLrrlvekks 36 
                 e l++ ++s +d+  Pv+ + ++   +l  k+ 
  MMETSP0890-20130614|6034_1 435 ELLENFIDSFEDETAPVQLQLVTAAVKLFLKQP 467
                 567777888888888888766666556555555 PP

>> PF02883.15  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.2e-05     0.021       8      65 ..     672     723 ..     669     775 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-05
                 -SSEEEEEEEE.EESSSEEEEEEEEEE-SSS-EEEEEEEEE--TTSEE-----S-S-B CS
  PF02883.15   8 ddglqIgfkfekperpnqiritlfftNkssqpitnfsfqaavpkslklqlqppssttl 65 
                 + g+ I+  fe   +++q +++l   N+s+ p++n+ +q+   ++  l l p+ + ++
  MMETSP0890-20130614|6034_1 672 SGGIGISAAFEL--ENGQPQLELVVLNQSQRPLNNLAIQF---NKSALGLAPA-KAQI 723
                 556667777766..**************************...8888888888.3333 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3   2.9e+03     176     197 ..      45      66 ..      14      74 .. 0.68
   2 ?    7.7   0.0    0.0019       1.8     177     210 ..      81     114 ..      73     116 .. 0.87
   3 ?   -0.2   0.0      0.48   4.7e+02     179     204 ..     122     147 ..     117     177 .. 0.68
   4 ?   -0.1   0.1      0.45   4.4e+02      87     131 ..     354     396 ..     342     422 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3
   PF12348.3 176 dliekslkkgleDanpeVReaa 197
                  l +++++k  +D+np VR  a
  MMETSP0890-20130614|6034_1  45 LLSVNTFVKDAADPNPLVRALA 66 
                 3667788888899999999766 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0019
   PF12348.3 177 liekslkkgleDanpeVReaaRatfweffkvwPs 210
                  + + l+k l D +p VR++a  ++ +++++ P+
  MMETSP0890-20130614|6034_1  81 YLCEPLQKTLRDEDPYVRKTAAMCVAKLYDIQPE 114
                 556779***********************99996 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.48
   PF12348.3 179 ekslkkgleDanpeVReaaRatfwef 204
                 +++l+ +++D+np+V  +a a++ e+
  MMETSP0890-20130614|6034_1 122 VDALRDLVSDPNPTVVANAVAALNEI 147
                 56788888888888866665554444 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.45
   PF12348.3  87 qldpmveillptLlkllgdtkkiisqnanqaladllenasftsrl 131
                 +l++ +++ +++Ll+l++ + + + q++ ++ +d+++  +  ++ 
  MMETSP0890-20130614|6034_1 354 KLEKAAQRCINVLLELIQTKINYVVQESVIVTTDIFRRYP--QKY 396
                 6788899999999999999999999999999999999988..444 PP

>> PF03130.11  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   1.1e+03       2      23 ..      63      84 ..      62      87 .. 0.71
   2 ?    1.3   0.1       0.6   5.9e+02       3      26 ..     138     172 ..     136     173 .. 0.82
   3 ?    6.5   0.1     0.013        13       3      26 ..     342     371 ..     341     372 .. 0.94
   4 ?    0.2   0.0       1.4   1.3e+03      15      26 ..     397     408 ..     387     409 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.1
                SSSHHHHCCH--SHTTHHHHHH CS
  PF03130.11  2 RraAakaLgqlgdeeaipaLle 23
                R+ A++ +g ++ e++i+ L+e
  MMETSP0890-20130614|6034_1 63 RALAIRTMGCIRVERIIEYLCE 84
                5555666666666*****9986 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.6
                 SSHHHHCCH--S...........HTTHHHHHHHCC CS
  PF03130.11   3 raAakaLgqlgd...........eeaipaLleaLq 26 
                 ++A+ aL ++             + a++ Ll+aL+
  MMETSP0890-20130614|6034_1 138 ANAVAALNEIAEtssddsvlelsTSALQKLLAALN 172
                 56888888888888888999888999999999996 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.013
                 SSHHHHCCH--S......HTTHHHHHHHCC CS
  PF03130.11   3 raAakaLgqlgd......eeaipaLleaLq 26 
                 r+A++a+g++        +++i +Lle+ q
  MMETSP0890-20130614|6034_1 342 RRAVRAIGRCAIklekaaQRCINVLLELIQ 371
                 79*************************987 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 1.4
                 HTTHHHHHHHCC CS
  PF03130.11  15 eeaipaLleaLq 26 
                 e++i++L+e+L+
  MMETSP0890-20130614|6034_1 397 EAIIATLCENLE 408
                 799*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.40u 0.35s 00:00:01.75 Elapsed: 00:00:01.26
# Mc/sec: 1726.90
//
Query:       MMETSP0890-20130614|6035_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.60
# Mc/sec: 1465.77
//
Query:       MMETSP0890-20130614|6039_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   73.8   2.2    5.3e-20   71.8   1.4    1.9  1  PF00106.20 short chain dehydrogenase
    6.8e-10   39.0   0.0    8.5e-10   38.7   0.0    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    2.9e-08   33.4   1.1      6e-07   29.1   0.8    2.2  1  PF08659.5  KR domain
  ------ inclusion threshold ------
      0.047   13.4   0.1      0.086   12.5   0.1    1.4  1  PF01190.12 Pollen proteins Ole e I like
      0.081   11.4   0.1       0.11   11.0   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   1.4   1.9e-23   5.3e-20       7     166 ..       3     155 ..       2     156 .. 0.88

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 1.9e-23
                 --------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.....HHHHHHHHHHHTHHHHHHHHHHHH.....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20   7 GGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleel....tperlervlapkvtgawllheltld.....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 GG++glG+a+Ar L e+ a++l+  +           +    ++ +++++v c+v +++++++++++++      ++ ++ ag+    +++++       e++ervl+++v g++++++l+ +     +  g +++++S+a++ g  gq aYaa+k a+ a++  +++++
  MMETSP0890-20130614|6039_1   3 GGSSGLGAATARALSERFAKVLIADKKV---------V----ERKENTEFVECNVCSEKDVSKAFDRVP----DANVAINCAGIGFaRKVFSKKhgthPLEDFERVLRVNVLGSFNVARLASErfvqrNTNGLIINTASIAAFEGQRGQVAYAASKGAVAAMTLPLARDL 155
                 9****************99888877743.........2....2345789********************....7899*******6547777776787799***********************9997444********************************99888775 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   3.1e-13   8.5e-10       6     240 ..       6     224 ..       3     227 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 3.1e-13
                 -----HHHHHHHH---EEEE---HH----------------------TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB.-----EEEEEE-------------------THHHHHHHHHH----S---EEEEEE-------------------------------.-CCC---HHHHHCSGGGTT----EEE--- CS
   PF13561.1   6 nsigwaiakalaeaGaevilttwvpaklkkkvqelakelpadvvplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlm.neggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggiekmieyseenapLgkel.saeevaeaaafLlsdlasaiTgetlyvDg 240
                 +++g+a a+al e  a+v++   +  +         ++ ++++v+++v se+dvs+ +++v + +   + i    i+++ +   +k+  +   +++++ l ++++   ++++ a ++ +  n +g i+ +  +a+ +  +g+  ++++K a+   t  lA++l++ + iRv ti+ G  +t   +a++  e + +  +++    ++l  +ee a+ +++++ +    i+g++++ Dg
  MMETSP0890-20130614|6039_1   6 SGLGAATARALSERFAKVLIADKKVVE---------RKENTEFVECNVCSEKDVSKAFDRVPDAN---VAINCAGIGFARK-VFSKKHGTHPLEDFERVLRVNVLGSFNVARLASERFVQrNTNGLIINTASIAAFEGQRGQVAYAASKGAVAAMTLPLARDLAE-HSIRVVTIAPGLFRTPLLEALP--ESVQTDLANSILFPSRLgLPEEFAKLVLAIIDND--YINGTVIRLDG 224
                 799999999999999999998777654.........344789*******************9997...4444566666666.3566767789**********************995443255699999******99999999*********************9.*********************9..4444444444444444559**********99965..8******9998 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.8   2.2e-10     6e-07       7     159 ..       3     147 ..       2     172 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.2e-10
                 ---SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---..EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC.....----EEEEEEEGGGT-------------HHHHHH CS
   PF08659.5   7 GGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplr..GvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad.....epldffvlfSSiagvlgsagqanyaaanaflDal 159
                 GG  glG+++ar L er a+ l+   +                ++  + ++v+++v ++++v++++++v +++ +++  G+  a  v++ +    +  ed+++vl+  v G+ n+ +l ++     ++  +++ ++Sia++ g++gq++yaa++  + a+
  MMETSP0890-20130614|6039_1   3 GGSSGLGAATARALSERFAKVLIADKKV---V-----------ERKENTEFVECNVCSEKDVSKAFDRVPDANVAINcaGIGFARKVFS-KKHGTHPLEDFERVLRVNVLGSFNVARLASErfvqrNTNGLIINTASIAAFEGQRGQVAYAASKGAVAAM 147
                 8999999999999999999877654444...2...........23336789******************99995543214444444444.344556789*******************9998888566678899******************98776664 PP

>> PF01190.12  Pollen proteins Ole e I like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.1e-05     0.086       5      33 ..      40      69 ..      37      89 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.1e-05
  PF01190.12  5 vyCdtcsk.gfkasayplsgakVkieCkdk 33
                v C+ cs+ +++++   +++a+V+i+C + 
  MMETSP0890-20130614|6039_1 40 VECNVCSEkDVSKAFDRVPDANVAINCAGI 69
                99******888888888**********984 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.9e-05      0.11      33     109 ..      20     112 ..       7     148 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.9e-05
  PF01073.14  33 espelleelsklqvkt...vlegDvtdkekleeale...gvdvvihtaaiidvlg..........kaerdeilkvnvkGTqnvleacvkagvr 109
                 + + l  + + +++k+   ++e+ v++++++++a +   +++v i  a+i   ++             ++++l+vnv G  nv   + +  v+
  MMETSP0890-20130614|6039_1  20 FAKVLIADKKVVERKEnteFVECNVCSEKDVSKAFDrvpDANVAINCAGIGFARKvfskkhgthpLEDFERVLRVNVLGSFNVARLASERFVQ 112
                 55555555555555555569**************8744478999**999976655555777776667789999******99998877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 892.84
//
Query:       MMETSP0890-20130614|6037_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-07   29.9   0.0    2.4e-07   29.7   0.0    1.0  1  PF01007.15 Inward rectifier potassium channel


Domain annotation for each model (and alignments):
>> PF01007.15  Inward rectifier potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.8e-11   2.4e-07     244     307 ..      58     122 ..      46     123 .] 0.92

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.8e-11
  PF01007.15 244 eeedfeivvilegvvestgattqartsYlaeeilWGhrfepvvse.eegkykvdyskfektveva 307
                 ++ ++ei+ i+eg  e t+   qar sY  e++ +   f+p v    +g+ ++d+s+f++tv+v+
  MMETSP0890-20130614|6037_1  58 NDREIEIIAIVEGNDEYTSRLIQARHSYKLEDLGFWRTFSPAVGRlPDGSCRIDFSHFHRTVRVR 122
                 56899****************************9999******9889***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 439.93
//
Query:       MMETSP0890-20130614|6036_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-11   44.4   1.0    1.4e-10   41.3   0.7    2.2  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.7     1e-14   1.4e-10      93     204 ..     173     292 ..      17     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 1e-14
   PF04577.9  93 srlalkprkkprilyisR.lkagsRriaNedell.kllkkrg....fevvdpeelsfeeQvalfssakvivgphGsgLtnllFa.ppg.trvlelvspprldle.fenlaallgldyvyvi 204
                 +r + ++   p i++++R ++ ++R i N  e++ + l+++     ++ +++++l  +eQ  + +   +++g hG+gL+n+  + + g ++++e+++ ++   + +  +a+l++++ v ++
  MMETSP0890-20130614|6036_1 173 ERRNDTR-MLPLITIVDRgANDRRRTIPNIAEIEkQMLREFMgkalIQRINFAHLKPCEQWCVTHASTILIGQHGAGLANAALLrGDGrAALIEITPKSTAFKTiYPCVARLREVHFVRIH 292
                 3333333.667999****88888**********9755554444555**************************************55558******6665555559********99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:01.19
# Mc/sec: 1363.31
//
Query:       MMETSP0890-20130614|6041_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-45  153.2   0.0    9.7e-45  152.0   0.0    1.5  1  PF01163.17 RIO1 family
    1.4e-06   28.1   0.1    3.1e-06   27.0   0.1    1.6  1  PF09202.6  Rio2, N-terminal
    1.7e-06   27.8   2.4    0.00045   19.8   0.2    3.0  4  PF01636.18 Phosphotransferase enzyme family
    5.2e-06   25.6   0.0    1.3e-05   24.4   0.0    1.6  1  PF00069.20 Protein kinase domain
     0.0016   17.4   0.0     0.0063   15.4   0.0    1.9  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0045   16.0   0.0      0.018   14.0   0.0    1.9  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   4.3e-48   9.7e-45       1     180 [.      43     216 ..      43     222 .. 0.93

  Alignments for each domain:
  == domain 1    score: 152.0 bits;  conditional E-value: 4.3e-48
                 EEEEEB-S----EEEEEE-S---SS-HHHHHT---TTS-GG..G--HHHHHHHHHHHHHHHHHHCHH--.--S--EEEEETTEEEEE----TTCEGGCTTTS-.-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE---TTEEETTSTTHHHHHHHHHHHHHHHHHCHH-- CS
  PF01163.17   1 nVyhaasedgkevavKiyktstteFkkvkkyvdgdarfkdrksktnprklvklwaekEfrnLkrleeag.vrvPkpialkrnvlvmefigedgvaapklkdveleeaeelyeeileemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveldhpnalefLerDveniikfFrrkgve 180
                 +Vy+a+ +dg  +a+K+++++ t+Fk vk+++d+ +    r+s  n+ ++++l+a++E + L+++++   +rvP pi+ +r+++vm  ++  g+ +++l   +  + e++y e++++ ++ ++  glvH+DL+e+N+++d d  v+iID++Q+v+++h+na  +++rD++ i kfFr k  +
  MMETSP0890-20130614|6041_1  43 DVYEAMGNDGIPLAIKFHRLGKTSFKAVKQKRDYLQG---RTSAGNWFNMSRLAAQREWTFLNAIAQNTdIRVPMPIDQNRHAVVMTRLE--GMTMYQLAGFS--QPERVYTECIHA-ARTLASRGLVHCDLNEFNIFIDPDeVVTIIDFPQMVSTSHENATYYFQRDIKSIRKFFRTKIFK 216
                 69********************************998...6789*******************9876544********************..********999..9**********5.55556*******************7788*******************************98766 PP

>> PF09202.6  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.3e-09   3.1e-06      59      82 .]       3      26 ..       1      26 [. 0.92

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.3e-09
   PF09202.6 59 akydGYkLtyeGyDyLALktlskr 82
                 +ydGY+Lt +GyD+LAL++l +r
  MMETSP0890-20130614|6041_1  3 SRYDGYRLTWSGYDVLALRALCQR 26
                68*******************987 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00055       1.2       5     105 ..      36     156 ..      33     158 .. 0.77
   2 !   19.8   0.2     2e-07   0.00045     159     193 ..     152     186 ..     139     193 .. 0.75
   3 ?   -2.6   0.1       1.4   3.2e+03     113     141 ..     280     308 ..     251     329 .. 0.68
   4 ?   -2.8   0.0       1.7   3.8e+03     103     129 ..     416     457 ..     331     467 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00055
                 EE--SSEEEEEEEETT..TEEEEEESSCCHHHHHHHHHH.........................HHHHHC.CSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHH CS
  PF01636.18   5 lsgGasnrtyrvttgag.ryvlrrarparaaeelrreva.........................llrlLa.kagipvPevlagdtdddvlgllfalleyvpgevlerklnarqlpallealaellaal 105
                 +++G ++++y+    +g +++ +++r +++  ++ ++ +                         +l ++a +++i vP +++       + ++++++++++g ++++ +  +q ++++ +++++ + l
  MMETSP0890-20130614|6041_1  36 IGEGKESDVYEAMGNDGiPLAIKFHRLGKTSFKAVKQKRdylqgrtsagnwfnmsrlaaqrewtFLNAIAqNTDIRVPMPID-------QNRHAVVMTRLEGMTMYQLAGFSQPERVYTECIHAARTL 156
                 7788899999999988779999998888666666666667777888888888877777777777888888688889******.......8889**************556667777776666665554 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2e-07
                 HHHCSS--EEB-SS-SGGGEEEETTTTEE.EE---.T CS
  PF01636.18 159 llpgaeppvllHgDlhpgNllvdpddgrv.gviDf.e 193
                 + +   +++l+H+Dl+  N+++d  +++v  +iDf +
  MMETSP0890-20130614|6041_1 152 AARTLASRGLVHCDLNEFNIFID--PDEVvTIIDFpQ 186
                 44445689***************..667779****44 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.4
                 SHGGHCTBCTHHHHHHHHHHHHHHHHHCT CS
  PF01636.18 113 dpladflapyltllrllesataalvasel 141
                  p+   +a++ + ++ll ++ +++++ + 
  MMETSP0890-20130614|6041_1 280 APPKKKTAQDNDDDALLRAYFQRSLHDDE 308
                 45555555555555555555555544444 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 1.7
                 H...............HHHHS--TTSHGGHCTBCTHHHHHHH CS
  PF01636.18 103 a...............alhqadpaadpladflapyltllrll 129
                 +                l   d++++p ++++a++++++++ 
  MMETSP0890-20130614|6041_1 416 RgtdhpiedsvsppasSLPGTDQQFRPSSYYAATTIEEQQKA 457
                 033333333333333344445555555555555555555555 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.5e-09   1.3e-05       3     142 ..      32     184 ..      30     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5.5e-09
                 EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.........HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH......HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE--- CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.........ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk......kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDF 142
                 l++k+G+G+ + Vy+a+ ++     A+K  +  +++ k+ k+++              + +l  +   ++l+++ +++++ + + + ++ +   +++       ++     +  ++ ++ + + + l s+g++H+DL   Ni++d ++++ i+DF
  MMETSP0890-20130614|6041_1  32 LGSKIGEGKESDVYEAMGNDGI-PLAIKFHRLGKTSFKAVKQKRDylqgrtsagNWFNMSRLAAQREWTFLNAIAQNTDIRVPMPIDQNRHAV-VMTrlegmtMYQLAGFSQPERVYTECIHAARTLASRGLVHCDLNEFNIFIDPDEVVTIIDF 184
                 5789************987775.7****99998888888777666788999999666677777777777777777755555555555553222.22222222223444677788999************************************** PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-06    0.0063      51     185 ..      87     206 ..      63     230 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.8e-06
   PF06293.9  51 fklgetrsvrEfrllkrLre.agvpvpkpvaaaaqkvgleyqAdllteklegaq..dLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarrrlr..akkwkekdLarL 185
                 f+++++ + rE+  l++  +   ++vp p+  +          ++++ +leg+    La + +      e++      +   +++ + ++g+ H dln  ni++d +e    v +iD+++ +  +   a+   ++d++ +
  MMETSP0890-20130614|6041_1  87 FNMSRLAAQREWTFLNAIAQnTDIRVPMPIDQNRH--------AVVMTRLEGMTmyQLAGFSQP-----ERVY----TECIHAARTLASRGLVHCDLNEFNIFIDPDE---VVTIIDFPQMVSTSHenATYYFQRDIKSI 206
                 56777777777777777754156777777754433........445566777542245555553.....4444....444456788999******************9...********998777532344445666655 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.8e-06     0.018     111     159 ..     148     198 ..      31     213 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.8e-06
                 HHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES..TTTSCE CS
  PF07714.12 111 qiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi..ekddyy 159
                 +  ++ + L+s+ lvH dL   N++++ ++vv i Df  + ++  e+  yy
  MMETSP0890-20130614|6041_1 148 ECIHAARTLASRGLVHCDLNEFNIFIDPDEVVTIIDFPQMVSTshENATYY 198
                 555677889****************************74433311333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.78
# Mc/sec: 1456.25
//
Query:       MMETSP0890-20130614|6043_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.015   15.2   0.1    1.4  1  PF14137.1 Domain of unknown function (DUF4304)


Domain annotation for each model (and alignments):
>> PF14137.1  Domain of unknown function (DUF4304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.1e-06     0.015      60     108 ..      34      80 ..      11     107 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
   PF14137.1  60 ksnkeypkeydchirsrlgallpeetrdkwyelddgtdiekvleeised 108
                 +++   p+++d+h   rl ++l++++   + +++ +t+  +  eei ed
  MMETSP0890-20130614|6043_1  34 QEAIISPEYMDFHLYCRLRTILLRKN--VRKHFQYKTNEFRIYEEIDED 80 
                 566778*******************5..666666666669999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.32s 00:00:00.74 Elapsed: 00:00:00.93
# Mc/sec: 401.97
//
Query:       MMETSP0890-20130614|6042_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-30  105.8   0.0    1.7e-29  102.9   0.0    2.0  1  PF13460.1  NADH(P)-binding
    1.6e-06   27.4   0.0    3.6e-06   26.3   0.0    1.6  1  PF05368.8  NmrA-like family
    1.6e-05   24.3   0.0    2.8e-05   23.5   0.0    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family
     0.0059   15.2   0.3     0.0081   14.7   0.2    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
  ------ inclusion threshold ------
      0.025   13.3   0.2       0.39    9.4   0.1    2.4  1  PF07993.7  Male sterility protein
      0.058   13.5   0.1       0.17   12.1   0.1    1.9  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   7.5e-33   1.7e-29       1     182 [.       7     214 ..       7     215 .. 0.87

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 7.5e-33
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe...............ssgvtivkkDlfdledlaeala..gvdvvvdafgarped......regvkhlldalkaagvrrlvvvsaaglyrdkpgl...felldkplfkeylrakaaaeelle...asgldwtivrPaalfeaeet.tyelitegdpagesaisraDvAaalvdele 182
                 Iav+GAtG tGr+++ +lla+++ v+al R pskl                 ++++  +k+D+++l d+++ ++  +v  vv+++g +++d      ++g+ ++++++k+ +v+r+ vv++ g+++++++    f+ l+   + +++++k ++e+l++    s+ldwtivrP++l+ ++ t  + +i    + + ++i+raDvA++++ +++
  MMETSP0890-20130614|6042_1   7 IAVFGATGLTGREVTYQLLAQDVPVRALCRDPSKLVTplgscgedgankiveNDNLFKFKGDVTKLDDVEKIFEtnDVTGVVISLGGKTSDvgktmlTDGTTNVIQCMKKYDVSRIAVVTSIGTGDSSNQApffFKVLMGTVMRSIFEDKNNQEKLFTqgiGSDLDWTIVRPGGLTVEPPTgVINVI----DGEAGSIARADVASFCIGAVL 214
                 9********************************88877887887777777767999999**************9778999**********9999999*****************************877754445555555669999**********634468***********9998855377777....57789***********98875 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.6e-09   3.6e-06       1      67 [.       7      84 ..       7     123 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.6e-09
                EEESS----HHHHHHHHHHH---EEEEE-S--..........---HHHHHHHSTTEEE.---TT-HHHHHHHH----E CS
   PF05368.8  1 ilviGaTGrqGksvvraslkaghkvralvRdl..........kselakslkaaGvelv.egdlddkeslvealkgvdv 67
                i+v+GaTG  G+ v+  +l+++ +vral Rd+           ++ a+++ ++ + +  +gd+   + +++++++ dv
  MMETSP0890-20130614|6042_1  7 IAVFGATGLTGREVTYQLLAQDVPVRALCRDPsklvtplgscGEDGANKIVENDNLFKfKGDVTKLDDVEKIFETNDV 84
                89******************************7777777766555666666665555556665555555555555444 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.2e-08   2.8e-05       1     120 [.       7     131 ..       7     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.2e-08
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH..............TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG- CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri..............rvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasSsevy 120
                 i V GatG+ G+ ++ +ll+++  v++l+r++++                      ++  +++d+t+ d++e++f+ ++++ V+   + +     ++d  +++   + gt+n++++++k++v r+  + S  + 
  MMETSP0890-20130614|6042_1   7 IAVFGATGLTGREVTYQLLAQDVPVRALCRDPSKLVTPL--GscgedgankivendNLFKFKGDVTKLDDVEKIFETNDVTGVVISLGGK-----TSDVGKTML--TDGTTNVIQCMKKYDVSRIAVVTSIGTG 131
                 679*********************998888877652222..24577888889999999999*****************887766555532.....233444444..4599999999999999998888876555 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   3.5e-06    0.0081       2     116 ..       9     127 ..       8     139 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.5e-06
  PF01073.14   2 VtGgsGFlGrrlvreLleleelkevrvldlrespell......eelsklqvkt........vlegDvtdkekleealegvdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSs 116
                 V G++G  Gr++  +Ll  +    vr l ++ s+ +       e+ ++    +          +gDvt+ +++e+  e  dv  ++   i + g  ++d    +   GT nv++  +k +v ++  + s
  MMETSP0890-20130614|6042_1   9 VFGATGLTGREVTYQLLAQD--VPVRALCRDPSKLVTplgscgEDGAN----KivendnlfKFKGDVTKLDDVEKIFETNDVTGVV---ISLGG-KTSDVGKTMLTDGTTNVIQCMKKYDVSRIAVVTS 127
                 89***************999..78999986666544211111122222....122235687899**************99986444...44444.66777888999***************99866665 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00017      0.39     176     213 ..     160     195 ..       9     208 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00017
   PF07993.7 176 EklvreasrrsglpvviiRpsiivgesetGwiegsdlg 213
                 Ekl  +    s+l ++i+Rp+ ++ e++tG i+  d g
  MMETSP0890-20130614|6042_1 160 EKLFTQGI-GSDLDWTIVRPGGLTVEPPTGVINVID-G 195
                 55555555.46999******************9888.4 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.4e-05      0.17       2      26 ..       7      32 ..       6     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.4e-05
                EEEB--------HH.HHHHHCTSSEE CS
  PF01118.19  2 vaivGatGyvGqel.lrlLeehpele 26
                +a+ GatG +G+e+  +lL+++ ++ 
  MMETSP0890-20130614|6042_1  7 IAVFGATGLTGREVtYQLLAQDVPVR 32
                89************899999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:01.03
# Mc/sec: 579.31
//
Query:       MMETSP0890-20130614|6047_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   13.5   0.1       0.12   11.9   0.0    1.8  2  PF00715.12 Interleukin 2


Domain annotation for each model (and alignments):
>> PF00715.12  Interleukin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.1e-06      0.12      20      72 ..      31      84 ..      22     108 .. 0.75
   2 ?   -2.7   0.0      0.29     4e+03      13      31 ..     138     156 ..     131     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.1e-06
  PF00715.12 20 stketqkqleqllldlqlllekvnnyknlklsrlltfkfylPkk.atelkhlqc 72
                 +k++q ++++ll+d+q+ le+++ + +  +sr ++ +   P    ++++hl+ 
  MMETSP0890-20130614|6047_1 31 DQKKKQAEINSLLIDIQKALEGMKYNVDSAISRRHSQHKISPSShPAKFRHLKK 84
                5899999*****************999999999887554445432677777764 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.29
  PF00715.12  13 nsaPtssstketqkqleql 31 
                 + +P+ ss k++ + +e+l
  MMETSP0890-20130614|6047_1 138 DCTPCVSSVKKKDRAIEKL 156
                 5789999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.94
# Mc/sec: 688.32
//
Query:       MMETSP0890-20130614|6050_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.3   0.0      0.068   12.5   0.0    1.3  1  PF08465.5 Thymidine kinase from Herpesvirus C-terminal


Domain annotation for each model (and alignments):
>> PF08465.5  Thymidine kinase from Herpesvirus C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-06     0.068      12      28 ..      30      46 ..      29      46 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-06
   PF08465.5 12 eIYtQilknsaIKtrav 28
                 IYtQ + n ++Kt+++
  MMETSP0890-20130614|6050_1 30 QIYTQQRENGDVKTNFL 46
                6*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.91
# Mc/sec: 584.61
//
Query:       MMETSP0890-20130614|6046_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-56  190.0   0.0    4.9e-56  189.6   0.0    1.1  1  PF00069.20 Protein kinase domain
    3.6e-41  140.8   0.0    5.4e-41  140.3   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.063   12.8   0.0       0.11   12.1   0.0    1.3  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   0.0   1.1e-59   4.9e-56       1     260 []      29     300 ..      29     300 .. 0.88

  Alignments for each domain:
  == domain 1    score: 189.6 bits;  conditional E-value: 1.1e-59
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..HHCCB....-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE...CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.......HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..kegkl....seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl...eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.......eelkdlikkllekdpakRltaeeilkhpwl 260
                 y++++ +G G+f+kVy a+ ++++k+vA+K+++ +    + ++ + +E+++++++ Hpn++ +++ f +++el+lv+ ++e+g+  ++++  k + l     ee +  i+ q l+gl+ylHsng iHrD+K  NiLld +g + +aDFG++  l    +++++++t+vgt+ +mAPEv+++ ++y+ k+DvWs+G++  el++g +p+  +    ++ l+  i++++ +  ++ +++ s       +++k++++ +l+k+++kR+t++ +l+++++
  MMETSP0890-20130614|6046_1  29 YKMKQLIGHGAFAKVYVAEIRGDSKRVAIKVMDLDLIAVEITEIS-KEVQMMRMCAHPNVLCCYSNFVHNSELHLVMPLMEKGSSLHIMHvaKGKGLcdgmAEEWLGYILFQALQGLRYLHSNGQIHRDIKAGNILLDPEGGVALADFGVSSWLvkaGQRQHQAQTFVGTPCWMAPEVMEQIDGYDYKADVWSVGITALELAKGFAPYAYHP--PMKVLLLTIQEEPPSLRSYATEK-SctgasfsRSFKEMVRMCLQKEARKRPTVHTLLNTRFF 300
                 678999*****************************9999888764.5************************************8887777775555456669999**********************************************988999999*************************************************884..44444444444444444333322.33568999**************************9987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   1.2e-44   5.4e-41       2     256 ..      30     295 ..      29     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 140.3 bits;  conditional E-value: 1.2e-44
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT....GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-E.ECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-B....S---TTS.....BHHHHHHHHHHT-SSGGGS--HHHHH CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk....ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeak.lpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlell.kegkr....lekpekc.....peelyelmkqCweeepeeRptfkelv 256
                 ++++ +G+Gaf+kV+ ++++     ++ +Va+K+++ +    e +e+ +e+++m+ + hpn++ ++  ++++++l +v+ ++++G+ l++++        + +  ++l  + +q  +G++yL+s+  +Hrd+ a N+Ll+ e  v ++DfG+++ + k  + +++ ++      WmapE++++   +  k+DvWs G++  E+++ g  py+   +++vl l+ +e+       ++ ++c     +++++e+++ C+++e+++Rpt ++l 
  MMETSP0890-20130614|6046_1  30 KMKQLIGHGAFAKVYVAEIR----GDSKRVAIKVMDLDLIAVEITEISKEVQMMRMCAHPNVLCCYSNFVHNSELHLVMPLMEKGSSLHIMHVAkgkgLCDGMAEEWLGYILFQALQGLRYLHSNGQIHRDIKAGNILLDPEGGVALADFGVSSWLVKAGQRQHQAQTFvGTPCWMAPEVMEQIDgYDYKADVWSVGITALELAK-GFAPYAYHPPMKVLLLTiQEEPPslrsYATEKSCtgasfSRSFKEMVRMCLQKEARKRPTVHTLL 295
                 57889***************....88899******99999999******************************************9999999993333334567889999********************************************99887777666666536789*******99877*****************99.88******999987766344322222234444452222257899****************99886 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.3e-05      0.11     167     197 ..     151     180 ..     128     181 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.3e-05
                 EEB-SS-SGGGEEEETTTTEEEE---TT-BB CS
  PF01636.18 167 vllHgDlhpgNllvdpddgrvgviDfedagl 197
                 + +H+D++ gN+l+dp++g+ ++ Df+ +++
  MMETSP0890-20130614|6046_1 151 GQIHRDIKAGNILLDPEGGV-ALADFGVSSW 180
                 559************88777.5999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:01.19
# Mc/sec: 994.79
//
Query:       MMETSP0890-20130614|6054_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-27   94.0   0.1    6.4e-27   93.8   0.1    1.0  1  PF02460.13 Patched family
    1.6e-25   89.2   3.7    2.1e-25   88.8   2.6    1.2  1  PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
  ------ inclusion threshold ------
       0.84    8.1   9.7        1.3    7.5   6.7    1.4  1  PF03176.10 MMPL family


Domain annotation for each model (and alignments):
>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   1.4e-30   6.4e-27     259     415 ..       2     171 ..       1     193 [. 0.78

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 1.4e-30
  PF02460.13 259 lspllAivsalGllfllGfrfnsillvtPFLvLaiGvDdvflmvaawqrttkkes.........vkkRisevlseagvaItitslTdvlsFgiGai.TttpeiqlfClytavavlfdfiYqitffaavlaivakaeaegrevllkr......iakeesaqriesessrksdks 415
                 l  +l+ v  lG+ ++ G  f s +  + FL L+ G+Dd+f++v a++r+  + +         + + ++++l+ +g +I++ts+Td+++F++ a+ T++p++  fC+++++av +df++q+t f+a +a+  +  + +++   +       i++++     ++    +++++
  MMETSP0890-20130614|6054_1   2 LGIILSLVVTLGIWMASGGYFHSLMGAVLFLTLGLGIDDAFVIVDAMDRVWLEADsdefsgsldTGELVGKALATSGASILVTSVTDAAAFAACALtTNIPALRSFCAVASIAVTMDFFFQVTWFVAFVALETNKRIDSKRRHRVEailggtIEEDKE---EHKPYQPQNKAF 171
                 5567899999****************************************9998889**********************************998761579*******************************988776654443333336655443222...222221222222 PP

>> PF12349.3  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   2.6   4.6e-29   2.1e-25      15     147 ..       3     145 ..       1     150 [. 0.90

  Alignments for each domain:
  == domain 1    score: 88.8 bits;  conditional E-value: 4.6e-29
   PF12349.3  15 ivllsvasslgllallglkltliileviPflvlavGvdnmfllvkavqrtskslsv.........eeriaealgevgpsilltsltellafl.igaltdvpavqeFclfaavavlfdFllqitfFvavLsldirre.esnrldl 147
                  ++ls++++lg++++ g  +  +++ ++ fl l+ G+d+ f++v a++r   + +           e +++al + g sil+ts+t+ +af+  ++ t++pa+++Fc+ a +av++dF++q+t+Fva+ +l+++++  s+r  +
  MMETSP0890-20130614|6054_1   3 GIILSLVVTLGIWMASGGYFHSLMG-AVLFLTLGLGIDDAFVIVDAMDRVWLEADSdefsgsldtGELVGKALATSGASILVTSVTDAAAFAaCALTTNIPALRSFCAVASIAVTMDFFFQVTWFVAFVALETNKRiDSKRRHR 145
                 5789********************9.7889******************98766665568888888999************************99999************************************99976666554 PP

>> PF03176.10  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.7   0.00029       1.3     234     312 ..      64     143 ..       1     154 [. 0.73

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00029
  PF03176.10 234 edreeaviravastgkvvtaaGltvaiamlg.LvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakprr 312
                  d+ e v +a+a++g  ++   +t a+a+++  +++++p+l+++  +++++v +d++  +T   A+++l   ++  ++rr
  MMETSP0890-20130614|6054_1  64 LDTGELVGKALATSGASILVTSVTDAAAFAAcALTTNIPALRSFCAVASIAVTMDFFFQVTWFVAFVALETNKRIDSKRR 143
                 4566678999999999999999999999987255689**************************99999988775433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.91
# Mc/sec: 510.87
//
Query:       MMETSP0890-20130614|6056_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.66    7.4  14.7       0.98    6.8  10.2    1.2  1  PF12722.2 High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  10.2   7.2e-05      0.98     588     728 ..     108     248 ..      96     258 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 7.2e-05
   PF12722.2 588 rhrkvfeqlkelilsiskelkeksnqkkkkeaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvn.....svdkqlevleekdrekesalsleeeeenlalrpksptglssks 728
                 rh++++ +++ l   ++k ++e+s+q+++++ k+ +++ ++++++s s   +s ++   s ++ +v ++++s++++d++++++e+ ++   +++++ +      ++++l++++ek r ++++ +  ee+e+  +++ sp g+  k+
  MMETSP0890-20130614|6056_1 108 RHARRLAAIQRLEERKKKRASERSRQRTIRK-KNLPKEHFSEDSESVSD--DSDSTSTFSSRPPQVTTLTSSVTPSDNQSEKDESGQEGAIQIDRADSqqdtlLENQELKEVAEKVRVNKPINQ--EEQEEVVIQKDSPQGIFLKN 248
                 9999******************999987754.33333333333333333..3323334444455667777777777777777777777777777776666666666777777777777777777..77778888888888886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1207  (0.0882826); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.83
# Mc/sec: 802.64
//
Query:       MMETSP0890-20130614|6055_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-25   89.2   0.5      2e-25   88.8   0.3    1.1  1  PF01965.19 DJ-1/PfpI family
    1.5e-13   50.2   0.6    1.9e-13   49.9   0.4    1.1  1  PF13278.1  Putative amidotransferase


Domain annotation for each model (and alignments):
>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.3   2.9e-29     2e-25       2     146 ..      54     192 ..      53     193 .. 0.93

  Alignments for each domain:
  == domain 1    score: 88.8 bits;  conditional E-value: 2.9e-29
                 EEEEES-HHH..EECECTSCCCCCECTSEEGGG--GGGESEEEE----HHHHHHCT-.HHHHHHHHHHHH----EEEE----.HHHHHHC-TT--EE---GGGHHHHHHTT-EEHHHHCSCEEETT.EEEESSGGGHHHHHHHHHHHH CS
  PF01965.19   2 vdvvshnsgk..evkgkegkfvvkvtadktledvnaddydalvlPGGhaaaedlradaeklvelvkefaaagkpiaaiChgp.alLaaagllkgkrvtgfpnvkedleeagaeyvdedalvvvdgnklvTsanpgsaeefakelleal 146
                 v+v+s n++   +v++++g    k+  d++++ v+  + d++ +PGG+++a +l+a   kl  ++ ++a+++k ++a+C++p ++L   g+l++k++t++p+ k  + + g ++ +    vvvd  ++vTs++pg++ +fa++l+e+l
  MMETSP0890-20130614|6055_1  54 VVVASANADGstTVTMSRG---IKIATDVHIDAVEG-EWDLVAVPGGMPGASNLAAS-SKLTSILTAQAEKNKNLGAVCASPaIVLEPLGILQNKQATCYPAPKF-IDAIGTKFTQ--GDVVVDA-NIVTSRGPGTSLKFALALVEKL 192
                 7888888888889999999...*************9.7*****************66.*********************************************88.7777888888..8899***.5*******************98 PP

>> PF13278.1  Putative amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.4   2.8e-17   1.9e-13       2     166 .]      31     190 ..      30     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 2.8e-17
   PF13278.1   2 vfdgfneldlaialdvlsaaneldeeevfevtivspdkapvtssngvkitadhplad.aaeaDvllvpggpg.lqkeaadpallaqlqkldaegqllaavcsG.allLaeaglLdgreatthwtlkealreaypkvsldedrlfvadgkliTagGvlaaldlalhlie 166
                 + dg +e++ +   d+l +a+     +v+  +  +   ++vt s g+ki+ d +++    e D++ vpgg+   +  aa+++l++ l  ++++ + l+avc   a +L  +g+L++ +at++    + +++ + k +   +  +v d +++T+ G   +l++al+l+e
  MMETSP0890-20130614|6055_1  31 IADGSEEIETTCITDTLVRAG----AQVVVASANADGSTTVTMSRGIKIATDVHIDAvEGEWDLVAVPGGMPgASNLAASSKLTSILTAQAEKNKNLGAVCASpAIVLEPLGILQNKQATCYPA-PKFIDAIGTKFT---QGDVVVDANIVTSRGPGTSLKFALALVE 190
                 679*****************9....3455555555556789999***********9967799********999**************9999999*******652789999***********985.345677777765...899999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 677.37
//
Query:       MMETSP0890-20130614|6060_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   14.7  24.4       0.58   10.0   2.9    4.2  4  PF00170.16 bZIP transcription factor
      0.021   14.8  22.4       0.31   11.0   5.7    2.3  2  PF04576.10 Zein-binding
      0.083   12.5  12.6        2.8    7.6   0.2    4.1  3  PF11414.3  Adenomatous polyposis coli tumour suppressor protein
       0.17   10.9   1.9       0.35    9.9   0.2    1.9  2  PF13714.1  Phosphoenolpyruvate phosphomutase
       0.19   10.4   6.4       0.25   10.0   4.5    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
       0.42    9.0   4.1       0.51    8.7   2.8    1.1  1  PF04285.7  Protein of unknown function (DUF444)
       0.44   10.8  14.1      0.073   13.3   1.3    3.2  3  PF12711.2  Kinesin motor
        0.5   10.5  11.6        2.1    8.5   1.3    3.5  3  PF03131.12 bZIP Maf transcription factor
       0.61    9.3   6.0          5    6.4   0.1    3.6  3  PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
       0.87    8.2  13.4          3    6.4   9.3    1.7  1  PF04912.9  Dynamitin
       0.95    8.5  16.1       0.31   10.0   1.5    2.2  2  PF13851.1  Growth-arrest specific micro-tubule binding
        1.1    8.4   9.1        4.1    6.6   0.7    2.2  2  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
        1.3    8.8   6.2         34    4.2   0.0    3.8  5  PF11166.3  Protein of unknown function (DUF2951)
        1.3    8.8  15.1        2.1    8.2   4.2    2.5  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        2.8    8.1  18.5         20    5.4   2.7    3.3  2  PF06005.7  Protein of unknown function (DUF904)
        4.3    6.6  12.4        2.7    7.2   6.5    2.0  2  PF06810.6  Phage minor structural protein GP20
        4.7    6.8  19.2        0.9    9.2   2.9    3.1  3  PF01920.15 Prefoldin subunit
        5.6    6.5  14.2        8.7    5.9   3.2    2.4  2  PF08286.6  Spc24 subunit of Ndc80
          6    6.5  22.3        3.7    7.2   0.2    4.4  4  PF02183.13 Homeobox associated leucine zipper
        6.1    5.0  11.7         11    4.1   8.1    1.5  1  PF03961.8  Protein of unknown function (DUF342)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.9   0.00086      0.58      28      63 ..      34      69 ..      33      70 .. 0.91
   2 ?    4.8   1.0     0.037        25      27      56 ..      65      94 ..      59      98 .. 0.84
   3 ?    8.4   0.9    0.0027       1.8      29      57 ..      98     126 ..      91     131 .. 0.87
   4 ?    6.8   0.4    0.0081       5.6      28      53 ..     129     154 ..     126     155 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00086
                HHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16 28 ieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                ++eL+ k++ Leae   L +ele+l+k   +l +e+
  MMETSP0890-20130614|6060_1 34 TQELKAKAEMLEAEKVGLMNELEHLRKSQLSLSDEL 69
                589************************998888765 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.037
                HHHHHHHHHHHHHHHH.......HHHHHHH CS
  PF00170.16 27 eieeLeekvkeLeaeNkaLkkeleelkkev 56
                  +eL+ + ++ e+e  aL  el++ + ++
  MMETSP0890-20130614|6060_1 65 LSDELKARTEKAESEKAALLTELDQFRTQA 94
                5689********************998776 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHH.......HHHHHHHH CS
  PF00170.16  29 eeLeekvkeLeaeNkaLkkeleelkkeva 57 
                 +e+ ++++ +e+e +aL +ele+lk +++
  MMETSP0890-20130614|6060_1  98 DEYLTRAQLIESEKSALLDELEQLKATAK 126
                 68889********************9876 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0081
                 HHHHHHHHHHHHHHH.......HHHH CS
  PF00170.16  28 ieeLeekvkeLeaeNkaLkkeleelk 53 
                  e L  ++++Le+e  a+ ++le+++
  MMETSP0890-20130614|6060_1 129 SEVLSARIEALETEKAAMTEQLERIN 154
                 67899****************99975 PP

>> PF04576.10  Zein-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.7   0.00045      0.31       3      67 ..      36     100 ..      34     108 .. 0.88
   2 ?    9.1   4.8    0.0018       1.2      13      53 ..     109     149 ..     101     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00045
  PF04576.10   3 rlrealeeerkaleallkELeeERsAaasAadeamamilrLqeEKaalemearqykrmaeekaey 67 
                 +l+ + e  ++++  l++ELe+ R++  s  de  a  ++ ++EKaal  e +q++  a    ey
  MMETSP0890-20130614|6060_1  36 ELKAKAEMLEAEKVGLMNELEHLRKSQLSLSDELKARTEKAESEKAALLTELDQFRTQASTSDEY 100
                 6777777777788899****************************************999887777 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0018
  PF04576.10  13 kaleallkELeeERsAaasAadeamamilrLqeEKaaleme 53 
                 ++++all ELe+ ++ a s+ +   a i+ L+ EKaa+  +
  MMETSP0890-20130614|6060_1 109 SEKSALLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQ 149
                 56789*******99999999888999***********9754 PP

>> PF11414.3  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   3.2     0.089        61      10      43 ..      42      75 ..      34      89 .. 0.83
   2 ?    7.6   0.2    0.0041       2.8       6      26 ..     101     121 ..      96     126 .. 0.84
   3 ?    2.3   0.0      0.19   1.3e+02       7      25 ..     134     152 ..     128     155 .] 0.67

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.089
   PF11414.3 10 keLererdlLLqgLeklekardWYqqqlqnvqer 43
                + Le e+  L+++Le l k++    + l++ +e+
  MMETSP0890-20130614|6060_1 42 EMLEAEKVGLMNELEHLRKSQLSLSDELKARTEK 75
                6799**************9998888888777776 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0041
   PF11414.3   6 lkrlkeLererdlLLqgLekl 26 
                 l r + +e e+++LL +Le l
  MMETSP0890-20130614|6060_1 101 LTRAQLIESEKSALLDELEQL 121
                 6677889************87 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.19
   PF11414.3   7 krlkeLererdlLLqgLek 25 
                  r+++Le e+ ++ + Le 
  MMETSP0890-20130614|6060_1 134 ARIEALETEKAAMTEQLER 152
                 4677777777777777765 PP

>> PF13714.1  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.24   1.7e+02     104     163 ..      44     106 ..      33     111 .. 0.76
   2 ?    9.9   0.2   0.00052      0.35     122     162 ..     114     154 ..      97     155 .] 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.24
   PF13714.1 104 iEDkkdn..raerqll.sieefaekiaaaraaakeagfvinARtdalllagagleeaieRara 163
                 +E +k +  ++ ++l+ s  +  + ++a  ++a++++  +    d + +++++ +e ++Ra++
  MMETSP0890-20130614|6060_1  44 LEAEKVGlmNELEHLRkSQLSLSDELKARTEKAESEKAALLTELDQFRTQASTSDEYLTRAQL 106
                 555544443355666666667788899999999999999999999999999999999999986 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00052
   PF13714.1 122 faekiaaaraaakeagfvinARtdalllagagleeaieRar 162
                   + +++ +a+ak++  v+ AR++al +++a+++e +eR++
  MMETSP0890-20130614|6060_1 114 LLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQLERIN 154
                 4678899999999999*********999***********86 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.5   0.00037      0.25     135     234 ..      46     152 ..      26     155 .] 0.55

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00037
   PF14362.1 135 aklaaltaeiaalqaeldeaqaevnaaeeevqceleGt.........ggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaaleeeraakvaeeqa 234
                 a++  l +e++ l++   ++++e++a +e++++e             + +    + ++++  +++ +a+  ele+lka+ ++  + l   +r +ale+e+aa++++ ++
  MMETSP0890-20130614|6060_1  46 AEKVGLMNELEHLRKSQLSLSDELKARTEKAESEKAALlteldqfrtQASTSDEYLTRAQLIESEKSALLDELEQLKATAKSSSEVLS--ARIEALETEKAAMTEQLER 152
                 3333333333333333333333333333333333333333333333355555556677777777777777888888888888888888..8888888888887776655 PP

>> PF04285.7  Protein of unknown function (DUF444)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.8   0.00075      0.51     130     225 ..      54     153 ..      30     154 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00075
   PF04285.7 130 dLelpnLkkkeakeiveakveragiqksGvpanisvkRtlrsa....lkRraaaerakraeldelaeelaeieakessdlvee.ealreeieklrakierv 225
                 +Le     + + ++ ++a++e+a+ +k  + ++++  Rt+ s     l R+++ e  k+a lde  e+l+  +++ s+ l    eal++e + + ++ er+
  MMETSP0890-20130614|6060_1  54 ELEHLRKSQLSLSDELKARTEKAESEKAALLTELDQFRTQASTsdeyLTRAQLIESEKSALLDE-LEQLKATAKSSSEVLSARiEALETEKAAMTEQLERI 153
                 444433344455666678999*****************99865333379***********9999.888888888877777666789999999998888887 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   3.0       1.1   7.2e+02       7      34 ..      43      70 ..      33      92 .. 0.48
   2 ?    1.9   1.9       0.4   2.7e+02      12      41 ..      66      95 ..      52     106 .. 0.66
   3 ?   13.3   1.3   0.00011     0.073      11      57 ..      96     142 ..      94     155 .] 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.1
   PF12711.2  7 rLeklldgslsaeslleeeneeLkeEik 34
                +Le+ + g + + ++l +   +L +E+k
  MMETSP0890-20130614|6060_1 43 MLEAEKVGLMNELEHLRKSQLSLSDELK 70
                3333334444444444444444444433 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.4
   PF12711.2 12 ldgslsaeslleeeneeLkeEiklLreqve 41
                 d+   + + +e+e ++L  E+++ r+q  
  MMETSP0890-20130614|6060_1 66 SDELKARTEKAESEKAALLTELDQFRTQAS 95
                344445556667777888888888887765 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 0.00011
   PF12711.2  11 lldgslsaeslleeeneeLkeEiklLreqveknpevtrfalEnlrlr 57 
                 + d+ l + +l e+e ++L +E+++L++     +ev+ +++E l ++
  MMETSP0890-20130614|6060_1  96 TSDEYLTRAQLIESEKSALLDELEQLKATAKSSSEVLSARIEALETE 142
                 5678899999999************************9999977654 PP

>> PF03131.12  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.3    0.0031       2.1      55      91 ..      41      77 ..      34      81 .. 0.88
   2 ?    3.0   0.1      0.16   1.1e+02      64      90 ..      68      94 ..      64     100 .. 0.74
   3 ?    4.7   1.5     0.047        32      56      90 ..     116     150 ..      91     155 .] 0.54

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0031
  PF03131.12 55 keelekekselaqeveklkeevarlarerdalkekle 91
                 e+le+ek  l++e+e+l++ + +l  e  a  ek e
  MMETSP0890-20130614|6060_1 41 AEMLEAEKVGLMNELEHLRKSQLSLSDELKARTEKAE 77
                578***********************99999888877 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.16
  PF03131.12 64 elaqeveklkeevarlarerdalkekl 90
                el++  ek ++e a+l  e d ++++ 
  MMETSP0890-20130614|6060_1 68 ELKARTEKAESEKAALLTELDQFRTQA 94
                566677788888888888888887764 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.047
  PF03131.12  56 eelekekselaqeveklkeevarlarerdalkekl 90 
                 +ele+ k++ ++  e l + + +l+ e+ a+ e+l
  MMETSP0890-20130614|6060_1 116 DELEQLKATAKSSSEVLSARIEALETEKAAMTEQL 150
                 34444444444444444444555555555555555 PP

>> PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4      0.56   3.8e+02      22      22 ..      64      64 ..      35      89 .. 0.59
   2 ?    3.2   0.0     0.071        49       9      36 ..     100     127 ..      92     129 .. 0.87
   3 ?    6.4   0.1    0.0074         5      12      29 ..     135     152 ..     131     155 .] 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.56
   PF10073.4 22 e 22
                 
  MMETSP0890-20130614|6060_1 64 S 64
                1 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.071
   PF10073.4   9 fieRierLeeEkkeiaedikdvyaeaks 36 
                 +  R   +e+Ek+++ ++  ++ a aks
  MMETSP0890-20130614|6060_1 100 YLTRAQLIESEKSALLDELEQLKATAKS 127
                 67788899************99999998 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0074
   PF10073.4  12 RierLeeEkkeiaedikd 29 
                 Rie Le Ek++++e+   
  MMETSP0890-20130614|6060_1 135 RIEALETEKAAMTEQLER 152
                 9************99765 PP

>> PF04912.9  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.3    0.0044         3     119     236 ..      33     154 ..      28     155 .] 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0044
   PF04912.9 119 eskeekistvalaevvetlkkqleslklekvlgkktvidssdtegnlskkllsqieefkkekakskspdksnfvt.YE...lyyrkeqsklsqasklaeLekRlakLEkaiGndedklslLt 236
                 +++e k++ + l  +   l ++le+l+  ++  ++ ++  ++  + +++ ll+++++f+++ ++s +  +   ++  E   l ++ eq k   +s  + L  R++ LE+   + +++l++++
  MMETSP0890-20130614|6060_1  33 DTQELKAKAEMLEAEKVGLMNELEHLRKSQLSLSDELKARTEKAESEKAALLTELDQFRTQASTSDEYLTRAQLIeSEksaLLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQLERIN 154
                 5667788888897777789999****99999999999999999999999*********8887777766665555423344488888888888888888899999999988888777777776 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   4.6     0.051        35      57     114 ..      34      92 ..      30      99 .. 0.73
   2 ?   10.0   1.5   0.00045      0.31      94     132 ..     114     152 ..      98     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.051
   PF13851.1  57 nkrlkepLkkaeeeveeLkkklkqyekdkqsLk.nlkaklkelekelknlkwesevleq 114
                 +++lk++ + +e+e+  L ++l+   k + sL+ +lka+ ++ e e+ +l  e ++++ 
  MMETSP0890-20130614|6060_1  34 TQELKAKAEMLEAEKVGLMNELEHLRKSQLSLSdELKARTEKAESEKAALLTELDQFRT 92 
                 56777777788888888888888888888888536888888888888888777777665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00045
   PF13851.1  94 klkelekelknlkwesevleqrfekverErdelykkfea 132
                  l+ele+ + + k  sevl+ r+e +e+E+ +++++ e+
  MMETSP0890-20130614|6060_1 114 LLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQLER 152
                 467899999999**********************99986 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.4    0.0068       4.7     103     159 ..      46     102 ..      35     107 .. 0.89
   2 ?    6.6   0.7     0.006       4.1     103     146 ..     109     152 ..      98     155 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0068
   PF05791.6 103 kdketlkeglekLqeeiqknqkevkqlleeLkafknklakdtksfksdvdeltsiLk 159
                 ++k++l+++le+L+++  + ++e k+  e+ +  k++l +++ +f +++++  + L 
  MMETSP0890-20130614|6060_1  46 AEKVGLMNELEHLRKSQLSLSDELKARTEKAESEKAALLTELDQFRTQASTSDEYLT 102
                 68999*****************************************99988777665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.006
   PF05791.6 103 kdketlkeglekLqeeiqknqkevkqlleeLkafknklakdtks 146
                  +k  l ++le+L+ ++++ ++   + +e L++ k+++++ +++
  MMETSP0890-20130614|6060_1 109 SEKSALLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQLER 152
                 46788999***************************999998765 PP

>> PF11166.3  Protein of unknown function (DUF2951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.4   1.6e+03      22      35 ..       4      17 ..       1      20 [. 0.80
   2 ?    0.9   0.1      0.55   3.7e+02      12      35 ..      40      63 ..      31      82 .. 0.71
   3 ?   -0.1   0.0       1.1   7.5e+02       9      36 ..      69      96 ..      64     103 .. 0.77
   4 ?    4.2   0.0      0.05        34       8      40 ..      99     131 ..      92     135 .. 0.83
   5 ?    4.1   0.1     0.053        36      11      31 ..     134     154 ..     130     155 .] 0.91

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.4
   PF11166.3 22 kifesldkikegqk 35
                 + e+l++i+++q 
  MMETSP0890-20130614|6060_1  4 AMTEQLERINSSQY 17
                68999999999985 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.55
   PF11166.3 12 rikrleendkkifesldkikegqk 35
                + + le ++  ++++l++++++q 
  MMETSP0890-20130614|6060_1 40 KAEMLEAEKVGLMNELEHLRKSQL 63
                556788888888888888888774 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.1
   PF11166.3  9 qerrikrleendkkifesldkikegqkt 36
                 + r ++ e+++  ++ +ld+ ++   t
  MMETSP0890-20130614|6060_1 69 LKARTEKAESEKAALLTELDQFRTQAST 96
                5678889999999999999998876554 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.05
   PF11166.3   8 eqerrikrleendkkifesldkikegqktqekv 40 
                 e+  r + +e+++  ++++l+++k + k+  +v
  MMETSP0890-20130614|6060_1  99 EYLTRAQLIESEKSALLDELEQLKATAKSSSEV 131
                 556788999***************999987665 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.053
   PF11166.3  11 rrikrleendkkifesldkik 31 
                  ri+ le ++  + e+l++i+
  MMETSP0890-20130614|6060_1 134 ARIEALETEKAAMTEQLERIN 154
                 69*****************96 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.2    0.0031       2.1      29      92 ..      39     103 ..      32     111 .. 0.87
   2 ?    4.5   3.9     0.045        31      29      92 ..      88     152 ..      79     155 .] 0.53

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  29 delleldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelke 92 
                 ++   l++e+  l++ele l++ + +ls e++   +k   ++++l+ e ++  ++ ++ ++ l+ 
  MMETSP0890-20130614|6060_1  39 AKAEMLEAEKVGLMNELEHLRKSQLSLSDELKARTEKAeSEKAALLTELDQFRTQASTSDEYLTR 103
                 567789999**********************9998877789999********9999999988766 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  29 delleldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelke 92 
                 d++    +   e +++++ + +e+ +l  e++++k+      e l a++++l +e +a++++l+ 
  MMETSP0890-20130614|6060_1  88 DQFRTQASTSDEYLTRAQLIESEKSALLDELEQLKATAkSSSEVLSARIEALETEKAAMTEQLER 152
                 44444455555555666666666666666666666554344444555555555555555555554 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.7     0.029        20      28      64 ..      35      71 ..      33      75 .. 0.89
   2 ?    1.0   6.9      0.68   4.7e+02       5      62 ..     114     150 ..      68     155 .] 0.54

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.029
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHH CS
   PF06005.7 28 eeLkeeneqlkeeneeLeeenkklkeereawqerlra 64
                +eLk ++e l+ e+  L +e ++l++ + +  + l+a
  MMETSP0890-20130614|6060_1 35 QELKAKAEMLEAEKVGLMNELEHLRKSQLSLSDELKA 71
                7999999999999************999988888876 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHH CS
   PF06005.7   5 lleeLeskiqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerl 62 
                 ll+eLe+  ++A                      ++ e L + ++ l  e++a++e+l
  MMETSP0890-20130614|6060_1 114 LLDELEQLKATAK---------------------SSSEVLSARIEALETEKAAMTEQL 150
                 2333333333333.....................333334444444445555444444 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5      0.58     4e+02      60     131 ..      41      61 ..      30      77 .. 0.42
   2 ?    7.2   6.5     0.004       2.7      16      86 ..      72     144 ..      56     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.58
   PF06810.6  60 ieklkeknkkkkeeyeaklkdlklnnaielalkkakaknakavkalldkdklkldddglkGLdeqieaLkes 131
                  e l+++                                                     GL + +e L++s
  MMETSP0890-20130614|6060_1  41 AEMLEAEKV---------------------------------------------------GLMNELEHLRKS 61 
                 333333333...................................................333333333333 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.004
   PF06810.6  16 qeeKskldka..eeeldslkeqlkerdkqiedLkkkvkdneeLkkkieklkeknkkkkeeyeaklkdlklnna 86 
                 + eK++ +ka   +eld+ ++q ++ d+ ++  +  + +++ L +++e+lk++ k  +e + a ++ l++++a
  MMETSP0890-20130614|6060_1  72 RTEKAESEKAalLTELDQFRTQASTSDEYLTRAQLIESEKSALLDELEQLKATAKSSSEVLSARIEALETEKA 144
                 224444444433459*******************************************999999999988876 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.3     0.035        24      65     103 ..      35      73 ..      33      76 .. 0.86
   2 ?    4.0   0.6     0.053        36      64      97 ..      66      99 ..      61     105 .. 0.77
   3 ?    9.2   2.9    0.0013       0.9      55     100 ..     106     151 ..     100     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- CS
  PF01920.15  65 eeLeerketlekeiktlekqleklekeleelkeelykkl 103
                 +eL++++e le+e   l ++le+l+k + +l +el+++ 
  MMETSP0890-20130614|6060_1  35 QELKAKAEMLEAEKVGLMNELEHLRKSQLSLSDELKART 73 
                 789999999999999999999999999999999999876 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.053
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15 64 keeLeerketlekeiktlekqleklekeleelke 97
                 +eL++r e++e e  +l  +l++ +++ +   e
  MMETSP0890-20130614|6060_1 66 SDELKARTEKAESEKAALLTELDQFRTQASTSDE 99
                6788888888888888888888888888776655 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0013
                 EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  55 lvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeely 100
                 l++ +k  + +eLe+ k+t++   + l+ ++e le+e + + e+l 
  MMETSP0890-20130614|6060_1 106 LIESEKSALLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQLE 151
                 7889999999*************************99999998885 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.2     0.013       8.7       4      64 ..      44     104 ..      33     110 .. 0.58
   2 ?    5.8   1.4     0.014       9.3       2      40 ..     116     154 ..     115     155 .] 0.93

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.013
   PF08286.6   4 ldnekvrlakelndleselenlqseleelkeeleeleeqenegkeedeeeaeeedsnilkl 64 
                 l+ ekv l++el++l ++  +l++el+  +e+ e  +  + ++ ++ + +a++ d+ + ++
  MMETSP0890-20130614|6060_1  44 LEAEKVGLMNELEHLRKSQLSLSDELKARTEKAESEKAALLTELDQFRTQASTSDEYLTRA 104
                 5666666666666666666666666665555555555555555555555555555555555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.014
   PF08286.6   2 eeldnekvrlakelndleselenlqseleelkeeleele 40 
                 +el+++k +    ++ l +++e l++e++ ++e+le ++
  MMETSP0890-20130614|6060_1 116 DELEQLKATAKSSSEVLSARIEALETEKAAMTEQLERIN 154
                 799*******************************99876 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.8      0.06        41      16      39 ..      36      59 ..      35      64 .. 0.83
   2 ?    5.2   0.9     0.023        16      15      40 ..      67      92 ..      66      97 .. 0.87
   3 ?    4.9   1.0     0.027        18      19      42 ..     109     132 ..     105     135 .. 0.71
   4 ?    7.2   0.2    0.0054       3.7      11      39 ..     126     154 ..     125     155 .] 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.06
  PF02183.13 16 aLkaendsLqkEkekLraevlsLk 39
                 Lka+ + L++Ek  L +e++ L+
  MMETSP0890-20130614|6060_1 36 ELKAKAEMLEAEKVGLMNELEHLR 59
                589999999999999999998886 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.023
  PF02183.13 15 daLkaendsLqkEkekLraevlsLke 40
                d Lka+ ++ ++Ek++L++e+ + + 
  MMETSP0890-20130614|6060_1 67 DELKARTEKAESEKAALLTELDQFRT 92
                89******************987665 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.027
  PF02183.13  19 aendsLqkEkekLraevlsLkekl 42 
                 +e  +L+ E e+L+a  +s +e l
  MMETSP0890-20130614|6060_1 109 SEKSALLDELEQLKATAKSSSEVL 132
                 455677888888888877777766 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0054
  PF02183.13  11 KrnydaLkaendsLqkEkekLraevlsLk 39 
                 K++ + L a+ ++L+ Ek+++  ++++ +
  MMETSP0890-20130614|6060_1 126 KSSSEVLSARIEALETEKAAMTEQLERIN 154
                 566688999**************999865 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   8.1     0.016        11     308     407 ..      44     152 ..       2     155 .] 0.74

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.016
   PF03961.8 308 vkakklGs..elgtkteievgldepelkeklkeleeeleeleeeleklkkk.......lkklpklka.egqlesekkeqleklletkeklkeeleeleaelkelkeeles 407
                 ++a+k+G   el+   + +++l+  elk+++++ e e  +l  el++ + +       l++ + ++  +++l +e ++  + ++ + e l+ ++e+le+e++++ e+le+
  MMETSP0890-20130614|6060_1  44 LEAEKVGLmnELEHLRKSQLSLS-DELKARTEKAESEKAALLTELDQFRTQastsdeyLTRAQLIESeKSALLDELEQLKATAKSSSEVLSARIEALETEKAAMTEQLER 152
                 45667777767788888888888.88888888888888888888888877766666665555554441344444444444444555588999999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1221  (0.0893066); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        38  (0.0027794); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.64
# Mc/sec: 580.37
//
Query:       MMETSP0890-20130614|6053_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-33  114.0  32.6    8.9e-18   64.1   7.2    3.0  3  PF01699.19 Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.072   12.9   0.1       0.14   12.0   0.1    1.4  1  PF04927.7  Seed maturation protein


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   4.6   7.5e-21   5.1e-17       3     138 ..     104     234 ..     102     235 .. 0.91
   2 ?   -0.8   0.6      0.14   9.7e+02      98     135 ..     439     476 ..     409     480 .. 0.48
   3 !   64.1   7.2   1.3e-21   8.9e-18       2     138 ..     481     619 ..     480     620 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 7.5e-21
  PF01699.19   3 islladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkg..agdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivllsdgrltvweglvllllyilylvl 138
                   ++ +++++++eq++  +gl++ ++g+tllAlg+ ap++ s i a+ +     +lalgs++G+ +f+ ++v g +++++   +       +  + +d+s ++l++ll+++++  s gr+++    ++l++y+ +++l
  MMETSP0890-20130614|6053_1 104 GTTADEYFSPALEQLSTDFGLPPRFAGVTLLALGNGAPDVSSTIHAVASSshGYRLALGSLTGAGMFVGTVVAGAVIYVGNGAK------AKGALLRDVSAYMLACLLIVFVFG-SVGRVSYAGITLFLFAYCGFVIL 234
                 567889*****************************************997779*********************9999887754......899************777777676.********************986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.14
  PF01699.19  98 dfsflllvllllllivll..sdgrltvweglvllllyily 135
                  + ++l  +l+l+l   l  + gr+    + + l+l+++ 
  MMETSP0890-20130614|6053_1 439 LICLILGSILALVLA--LytNNGRTLPGAASLALSLFGFA 476
                 222222222333333..24567776666666777776665 PP

  == domain 3    score: 64.1 bits;  conditional E-value: 1.3e-21
  PF01699.19   2 lislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekr..iqkvlvfkvtldfsflllvllllllivll.sdgrltvweglvllllyilylvl 138
                 +i +lad lv+ +e ++   ++++t lglt+lA+g+s++++ ++i++a+k+ +++a+ + + ++lfn+l+++gl + +  + +        l+  + ++f fl++  +l +liv +   g++ ++ g++ +++y++yl++
  MMETSP0890-20130614|6053_1 481 WIDVLADELVSLLEFFGILANIPDTALGLTVLAWGNSIGDFSTNIAMAKKNMANMAITASFAGPLFNALVGLGLGFAARLASIDDpsVPVSLNPALYASFAFLVFN-CLSMLIVGIaCNGVIPRMFGIASVVFYFAYLLT 619
                 999**********************************************************************999999887554644444444455555555555.33333333368*******************987 PP

>> PF04927.7  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     2e-05      0.14      41      59 ..     243     261 ..     238     264 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2e-05
   PF04927.7  41 ttpGGvAaaaqaAAdlNar 59 
                  +pGG+A++++ AA++N +
  MMETSP0890-20130614|6053_1 243 RRPGGPAEQIRRAARANDE 261
                 58***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.36s 00:00:01.31 Elapsed: 00:00:00.91
# Mc/sec: 1645.85
//
Query:       MMETSP0890-20130614|6063_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   18.5   1.0     0.0026   18.5   0.7    2.9  3  PF12868.2 Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> PF12868.2  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.11   1.4e+03      52      71 ..      13      32 ..       5      48 .. 0.66
   2 ?    0.6   2.0     0.064   8.8e+02      21      73 ..      82     132 ..      64     137 .. 0.63
   3 !   18.5   0.7   1.9e-07    0.0026       4     106 ..     132     240 ..     129     241 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.11
   PF12868.2 52 yeesydpapypaspevdekr 71
                 +++y+p+p ++ p+v++ r
  MMETSP0890-20130614|6063_1 13 QDHDYEPHPITTPPDVNRGR 32
                45566777766666555544 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.064
   PF12868.2  21 yAAhkysqrrerkkaekererkkededysdsyeesydpapypaspevdekryy 73 
                  A + y+q++++ ++e    ++++++++++  +++   ++   + ++++++y 
  MMETSP0890-20130614|6063_1  82 TALRAYEQKKHHVQEEMLHFSSRQKHQHQQQQQQQQ--SSLWVHAPSERQQYS 132
                 466778888888887777777777777544443333..344445556666665 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 1.9e-07
   PF12868.2   4 SRsRdlaeaaLaaaG.vGyAAhkysqrrerkkaekererkkeded.ysdsyeesydpapypasp....evdekryypesnyfppPpgsapvpppnaappYnPadYPppP 106
                 S + d+ + a a+aG vG AA+ ++ +++ ++  ++re++       ++  + + d + ++++      ++e + ++ s ++ppP +s p+ ++n + p  P   P  P
  MMETSP0890-20130614|6063_1 132 SAIEDMGQLARAVAGlVGSAAKTVELHEDAQRRAQQREHTLAAFHfWQERAQRQLDASLRMQQQqfatSMAELQARAASLQHPPPSASVPIYSKNSTSPSFPQHHPEEP 240
                 56678889999****99*****999777777777777776666555677777777777777776677789999******************888888878899999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1842  (0.134728); expected 273.4 (0.02)
Passed bias filter:                      570  (0.041691); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.59
# Mc/sec: 978.85
//
Query:       MMETSP0890-20130614|6065_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.61
# Mc/sec: 1272.82
//
Query:       MMETSP0890-20130614|6072_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.2   0.9      0.016   14.9   0.6    1.1  1  PF02575.11 YbaB/EbfC DNA-binding family
       0.19   11.9   1.8       0.22   11.7   1.3    1.1  1  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF02575.11  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.6   2.3e-06     0.016      43      84 ..      24      65 ..      21      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.3e-06
  PF02575.11 43 ksveidpelldpedkemledlivaAindAlkkaeelakeems 84
                +svei++++ +  +++ le+++vaA ++  k++++++k++ +
  MMETSP0890-20130614|6072_1 24 RSVEIKENVESSVEVDSLEEAVVAARQSTSKQSSTKKKKQQE 65
                58********99********************9999888655 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3   3.2e-05      0.22      35      75 ..      28      67 ..      12      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.2e-05
   PF06156.8 35 leenaelkleneklrerleeleeeekkkekkkkkkklgegk 75
                ++en e ++e+++l+e +   +++++k++++kkk k++e++
  MMETSP0890-20130614|6072_1 28 IKENVESSVEVDSLEEAVVAARQSTSKQSSTKKK-KQQESQ 67
                789*************999988844433333333.333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1860  (0.136044); expected 273.4 (0.02)
Passed bias filter:                      934  (0.0683148); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.46s 00:00:00.86 Elapsed: 00:00:00.99
# Mc/sec: 181.54
//
Query:       MMETSP0890-20130614|6076_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-25   87.1   0.0    1.4e-24   86.6   0.0    1.1  1  PF02958.15 Ecdysteroid kinase
    6.9e-11   42.2   1.0    1.7e-10   40.9   0.7    1.5  1  PF01636.18 Phosphotransferase enzyme family
    2.7e-08   32.7   0.0    3.5e-08   32.3   0.0    1.2  1  PF07914.6  Protein of unknown function (DUF1679)
     0.0045   16.4   0.1     0.0066   15.9   0.0    1.2  1  PF01633.15 Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0     4e-28   1.4e-24      93     284 ..      65     253 ..      54     257 .. 0.92

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 4e-28
  PF02958.15  93 lvlEDLkekgykvadrlkgldlehlklvlkkLAkfHAaslalkeekpevfkqlkkglleedyvssakeefeelleellkaalealkeelpelekea.ekleklkenlferlaelve.enesefnvLnHGDlwvnNimfkydeegepedvilvDFQlsrygspalDLlyflytsteeelrkekfdellrtYhesL 284
                 l l D+++++++    ++ ld+eh  + lk LAkfHAa     +   + ++ + +g++ e+  ++  + f+++   + k+ ++a+++++ + ++++   l +  + l+++la  v+ +n+++ +++ HGD +  N+ f+  ++++  ++ l+DFQ   yg +  D+++fl   +e +   e+++ ll++Y+++L
  MMETSP0890-20130614|6076_1  65 LFLSDFAPSNFWYQ--RNLLDFEHGAAGLKALAKFHAAFWGNTSI--DNLQIWPHGAYFEPDKQE-PDHFDKVGGDSWKRHYTAFADSFSQQKEHDfSTLGDRLQPLVRHLAYSVHpRNRENQQTIIHGDPKAANLFFRKSSQDADLQASLIDFQWTGYGKVGADVAHFLAAAVEASTLYEYESSLLDIYYDAL 253
                 67899999999998..48*********************999998..89999****999999988.799****************9999999888897777777789999999999899*************************************************************************99 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.7   4.9e-14   1.7e-10      45     212 ..      33     233 ..      13     257 .. 0.62

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 4.9e-14
                 HHHCCSSSB--BEEE..E-CSSCSC........EEEEEE---HHBCCT...CSHHHHHHHHHHHHHHHHHHHHHS...................--T........TSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHH.HHHHHHHHHHCSS--EEB-SS-SGGGEEEE....TTTTEE.EE---TT-BBE-TCHHHHCCCTCHT CS
  PF01636.18  45 rlLakagipvPevlagdtdddvlgl........lfalleyvpgevler...klnarqlpallealaellaalhqa...................dpa........adpladflapyltllrllesataalvasellelleeleer.vlaalaallpgaeppvllHgDlhpgNllvd....pddgrv.gviDfedaglgpplyDlasllrrwr 212
                 +++  agipvP+vl      d+++          + +l+   +  ++          + + ++a   +la++h+a                   +p+        + + +++ ++y +++  + ++ + ++ s l ++l+ l +  ++  +++++  + +++++HgD++ +Nl+++    + d     +iDf+ +g+g + +D+a +l++ +
  MMETSP0890-20130614|6076_1  33 DAVKSAGIPVPQVLG---IPDLRRDytnplnssFALFLSDFAPSNFWYqrnL----LDFEHGAAGLKALAKFHAAfwgntsidnlqiwphgayfEPDkqepdhfdKVGGDSWKRHYTAFADSFSQQ-KEHDFSTLGDRLQPLVRHlAYSVHPRNR--ENQQTIIHGDPKAANLFFRkssqDADL-QaSLIDFQWTGYGKVGADVAHFLAAAV 233
                 778888999999997...3333333355667776666666666666662322....3333344444566677777444444444444444444412233333333555557777777777777777.5788888888566666653444444444..59*******************743333.369********************5543 PP

>> PF07914.6  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0     1e-11   3.5e-08     267     356 ..     182     270 ..      89     273 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1e-11
   PF07914.6 267 kkvlvhgDlwqaNiLfseeeegklklkkiiDyQlvslgnpaeDlvrlllscLsgedRrarkeelLeqyyetflkaledngeepytleqLk 356
                 ++ ++hgD  +aN+ f +++++      +iD+Q    g+ + D++ +l++++ ++   + +++lL+ yy+ + ++   n ++ +++ +L+
  MMETSP0890-20130614|6076_1 182 QQTIIHGDPKAANLFFRKSSQDADLQASLIDFQWTGYGKVGADVAHFLAAAVEASTLYEYESSLLDIYYDALCSSN-PNISASFSRLDLQ 270
                 67899*************9887777778*******************************************99987.6768888877765 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.9e-06    0.0066      75     188 ..      94     232 ..      66     256 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.9e-06
                 HHHHTT---.................SS--SS-HHHHHH..HHH-----TT--EE--TT----EE-HHHHHHHHHHHHHHHT......T----EEEE-S------EEE....-------EE---TT-EEEEHHHHHHHHHHHT CS
  PF01633.15  75 laelHslel.................seskeskslwkti..qkwlnkeaqtkqkkeskkkqlklinledlekeleeleklle......ekespvvfCHnDlqegNill....nkeekklvlIDFEYasynyrafDlAnhfcEw 188
                 la++H+                    ++ k+++  ++++  ++w    ++  +   ++ +q k +++++l + l+ l ++l       + e++ ++ H D    N+ +    ++ + +  lIDF + +y   + D A +++ +
  MMETSP0890-20130614|6076_1  94 LAKFHAAFWgntsidnlqiwphgayfEPDKQEPDHFDKVggDSW----KRHYTAFADSFSQQKEHDFSTLGDRLQPLVRHLAysvhprNRENQQTIIHGDPKAANLFFrkssQDADLQASLIDFQWTGYGKVGADVAHFLAAA 232
                 55555554455555555555555555666666666666544567....3333333444556666777777777777777776566676667779999***********887777888899*****************988633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.14s 00:00:00.78 Elapsed: 00:00:00.89
# Mc/sec: 899.31
//
Query:       MMETSP0890-20130614|6085_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   19.7   0.2    0.00061   19.2   0.1    1.2  1  PF07039.6 SGF29 tudor-like domain
  ------ inclusion threshold ------
      0.036   13.7   0.2       0.19   11.4   0.0    1.9  2  PF09038.5 Tumour suppressor p53-binding protein-1 Tudor
      0.071   13.1   0.1        1.3    9.1   0.1    2.1  2  PF05641.7 Agenet domain
      0.093   12.3   0.1       0.14   11.8   0.1    1.3  1  PF09148.5 Domain of unknown function (DUF1934)
        0.2   11.2   1.5       0.33   10.4   0.0    1.9  2  PF09465.5 Lamin-B receptor of TUDOR domain
       0.27   11.2   1.3         15    5.6   0.1    2.2  2  PF11396.3 Protein of unknown function (DUF2874)


Domain annotation for each model (and alignments):
>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.7e-07   0.00061      33     121 ..       4      87 ..       1      96 [. 0.81

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.7e-07
   PF07039.6  33 ryevqDvddeeekktyklsrkkiiplPkklsketsklaefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedkereVk 121
                 +y+++ +d ++e+++ +   + i  + ++   ++ ++++f  g+kV A+Y + + +Y++ + ++  +++++y++ ++d e e    +V+
  MMETSP0890-20130614|6085_1   4 TYDIEYDDGDKETRVQTSFIRAIGDIQSTRAMSPLNQSAFNIGEKVEARYRKRSRYYPGRIARV--RADNTYDVDYDDGEIET---SVE 87 
                 57777666665555666667777788888899999*****************************..99**********98654...454 PP

>> PF09038.5  Tumour suppressor p53-binding protein-1 Tudor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.19   4.3e+02      29      41 ..       1      13 [.       1      33 [. 0.81
   2 ?   11.4   0.0   8.2e-05      0.19       5      41 ..      45      81 ..      40      96 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.19
                ----EEEE----- CS
   PF09038.5 29 gegkykllfddgy 41
                g+g y + +ddg 
  MMETSP0890-20130614|6085_1  1 GDGTYDIEYDDGD 13
                7899*******95 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 8.2e-05
                -----EEE-ST---BB---EEEE-----EEEE----- CS
   PF09038.5  5 vglrvvakwssngyfysgkitkdagegkykllfddgy 41
                +g +v a++     +y g+i +   +  y + +ddg 
  MMETSP0890-20130614|6085_1 45 IGEKVEARYRKRSRYYPGRIARVRADNTYDVDYDDGE 81
                7999*******************************94 PP

>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.07   1.6e+02      32      50 ..       3      21 ..       1      40 [. 0.71
   2 ?    9.1   0.1   0.00056       1.3       1      46 [.      43      85 ..      43      96 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.07
   PF05641.7 32 skykveyddlsledgeskl 50
                 +y +eydd ++e++ ++ 
  MMETSP0890-20130614|6085_1  3 GTYDIEYDDGDKETRVQTS 21
                479999*999999887765 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00056
   PF05641.7  1 fskGseVEVsseeeglrgaWfrAkVlkelkeskykveyddlsledg 46
                f+ G +VE + ++   r  ++++ +  +  +++y v ydd + e++
  MMETSP0890-20130614|6085_1 43 FNIGEKVEARYRK---RSRYYPGRIARVRADNTYDVDYDDGEIETS 85
                7789999999999...999********************9887765 PP

>> PF09148.5  Domain of unknown function (DUF1934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.9e-05      0.14      31     128 ..       3     103 ..       1     104 [. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.9e-05
                 TEEEEEEEE-----.-EEEEEEE----EEEEEE---BEEEEE----EEEEEEB---....--EEEEEEEEEEEE---S----EEEEEEEE-------EEEEE CS
   PF09148.5  31 gkyylrYeeeeesgmktkttlKieedevtliRsgavkskmvFekgkktlskYktpy....GqlelevkTkkleidldeeggkikidYeLkvngqlvgeykle 128
                 g+y + Y++ ++++ +++t +  + + ++ +R  ++  +  F+ g+k +++Y+       G++      + +++d+d+ +++  ++Y++  + +   ey+l+
  MMETSP0890-20130614|6085_1   3 GTYDIEYDDGDKET-RVQTSFIRAIGDIQSTRAMSPLNQSAFNIGEKVEARYRKRSryypGRIARVRADNTYDVDYDDGEIETSVEYHFIRSMECAREYQLS 103
                 67778999998777.9999998899999************************9765223356666666789*******99************9999999986 PP

>> PF09465.5  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       0.5   1.1e+03      37      44 ..       5      12 ..       2      18 .. 0.79
   2 ?   10.4   0.0   0.00015      0.33       5      44 ..      42      80 ..      38      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.5
   PF09465.5 37 YtviYkDG 44
                Y + Y DG
  MMETSP0890-20130614|6085_1  5 YDIEYDDG 12
                88899998 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00015
   PF09465.5  5 kyadGevvmGRWPGssLYYevkvlsfdsksqlYtviYkDG 44
                 +++Ge v  R+   s YY  ++     +++ Y v Y DG
  MMETSP0890-20130614|6085_1 42 AFNIGEKVEARYRKRSRYYPGRIARV-RADNTYDVDYDDG 80
                699******************99876.57789*******9 PP

>> PF11396.3  Protein of unknown function (DUF2874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.014        31      30      45 ..       3      18 ..       1      21 [. 0.89
   2 ?    5.6   0.1    0.0066        15      30      47 ..      71      88 ..      64      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.014
   PF11396.3 30 kyYevelekgnnekev 45
                + Y++e  +g++e+ v
  MMETSP0890-20130614|6085_1  3 GTYDIEYDDGDKETRV 18
                78***********987 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0066
   PF11396.3 30 kyYevelekgnnekevyf 47
                + Y+v+  +g+ e++v++
  MMETSP0890-20130614|6085_1 71 NTYDVDYDDGEIETSVEY 88
                78**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.80
# Mc/sec: 317.52
//
Query:       MMETSP0890-20130614|6086_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.79
# Mc/sec: 224.47
//
Query:       MMETSP0890-20130614|6084_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.87
# Mc/sec: 845.61
//
Query:       MMETSP0890-20130614|6080_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-12   44.4  36.2    1.2e-05   24.7   3.2    4.9  5  PF01839.18 FG-GAP repeat
    2.4e-09   37.3  13.6    1.1e-05   25.5   3.5    2.8  2  PF13517.1  Family description
    3.7e-07   29.9  30.8       0.26   11.2   0.0    7.0  7  PF14312.1  FG-GAP repeat
  ------ inclusion threshold ------
      0.094   11.8   0.1       0.16   11.0   0.1    1.3  1  PF00335.15 Tetraspanin family
        0.2   10.9   7.0        2.1    7.6   0.1    3.0  3  PF12256.3  Insecticide toxin TcdB middle/N-terminal region


Domain annotation for each model (and alignments):
>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   3.3   3.9e-08   0.00011       2      33 ..      46      83 ..      45      84 .. 0.78
   2 !   14.6   2.5   6.6e-06     0.018       7      27 ..     116     141 ..     109     149 .. 0.70
   3 !   24.7   3.2   4.4e-09   1.2e-05       2      28 ..     180     202 ..     179     215 .. 0.77
   4 ?   -1.6   0.0      0.78   2.1e+03      18      34 .]     268     284 ..     268     284 .. 0.67
   5 ?   -1.4   0.1      0.72     2e+03      18      32 ..     411     429 ..     410     429 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.9e-08
                CECEEEE-TT---S-EEEEE.T.....EECTCE--EEE CS
  PF01839.18  2 gnsvavgDfnGDGrpDlavG.p.....mggghnGavyv 33
                ++ +++gD++GDG +D+a G p     +   ++Gavy+
  MMETSP0890-20130614|6080_1 46 TAIASLGDIDGDGVNDVAFGaPgdshgKTVKNAGAVYI 83
                67899***************966566444444499997 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 6.6e-06
                 EE-TT---S-EEEEE.T....EECTC CS
  PF01839.18   7 vgDfnGDGrpDlavG.p....mgggh 27 
                 + D++G+G +Dl+vG p    +g+ +
  MMETSP0890-20130614|6080_1 116 ISDIDGNGVDDLVVGvPgidrNGFVD 141
                 56************995566633333 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 4.4e-09
                 CECEEEE-TT---S-EEEEETEECTCE CS
  PF01839.18   2 gnsvavgDfnGDGrpDlavGpmggghn 28 
                 g+ + +gD+nGDG++Dla+G    + n
  MMETSP0890-20130614|6080_1 180 GAIANLGDLNGDGYDDLAIG----AKN 202
                 88899**************5....444 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.78
                 EEEETEECTCE--EEEE CS
  PF01839.18  18 lavGpmggghnGavyvy 34 
                 +avG++g+++ Ga+y++
  MMETSP0890-20130614|6080_1 268 IAVGSPGFEDTGAAYIL 284
                 68864555555999996 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 0.72
                 EEEE..T.EECTCE.--EE CS
  PF01839.18  18 lavG..p.mggghn.Gavy 32 
                 l+vG  + +  g++ G+v+
  MMETSP0890-20130614|6080_1 411 LLVGvmYdDAAGYAsGSVW 429
                 8899976766666679998 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   4.4   6.4e-09   1.8e-05       1      61 []      53     129 ..      53     129 .. 0.78
   2 !   25.5   3.5     4e-09   1.1e-05       1      60 [.     118     197 ..     118     198 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 6.4e-09
   PF13517.1   1 DldgDGdlDlvva...........gdgglrlylnngdGtftdvaetslgag....gggtg.vafgDldgDGdlDllv 61 
                 D+dgDG  D+ ++           + g++++ l n+dG++++ +++   +       g++ +++ D+dg+G +Dl+v
  MMETSP0890-20130614|6080_1  53 DIDGDGVNDVAFGapgdshgktvkNAGAVYIVLRNADGSVKKSTRWIREDAskndFFGSSlARISDIDGNGVDDLVV 129
                 9************887777666655666*************9999833333332244444578************98 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 4e-09
   PF13517.1   1 DldgDGdlDlvva..........gdgg.lrlylnngdGtft..........dvaetslgaggggtgvafgDldgDGdlDll 60 
                 D+dg+G +Dlvv+          ++gg  +l+ln+ dGt++          + ++  + ++ gg+ + +gDl+gDG++Dl+
  MMETSP0890-20130614|6080_1 118 DIDGNGVDDLVVGvpgidrngfvDSGGfATLFLNS-DGTVErmvestrslrPLRMLNVQDEFGGAIANLGDLNGDGYDDLA 197
                 9************9988666555333368888887.***88444333332233344555557777799***********97 PP

>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.5    0.0013       3.5      24      48 ..      54      83 ..      43      84 .. 0.80
   2 !   10.7   2.0   0.00014      0.37      11      41 ..     102     139 ..     100     149 .. 0.80
   3 !    4.8   0.4    0.0091        25      15      48 ..     175     216 ..     173     217 .. 0.76
   4 !   11.0   0.1   0.00011      0.29      14      48 ..     244     283 ..     243     285 .. 0.85
   5 ?   -0.8   0.1      0.51   1.4e+03      21      49 .]     324     350 ..     322     350 .. 0.58
   6 !   11.2   0.0   9.6e-05      0.26      17      46 ..     398     428 ..     395     431 .. 0.92
   7 ?   -0.2   0.0      0.33     9e+02      25      44 ..     533     555 ..     532     559 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
   PF14312.1 24 isgd...tavVGAygddd..ngtnsGsaYv 48
                i+gd   ++  GA+gd++    +n+G++Y+
  MMETSP0890-20130614|6080_1 54 IDGDgvnDVAFGAPGDSHgkTVKNAGAVYI 83
                55666645999*******6544599****7 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
   PF14312.1  11 DgaagDyFGssVa....isgd...tavVGAygdddngt 41 
                 D++++D+FGss a    i+g+   ++vVG +g d+ng 
  MMETSP0890-20130614|6080_1 102 DASKNDFFGSSLArisdIDGNgvdDLVVGVPGIDRNGF 139
                 99**********9666677779955*********9864 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0091
   PF14312.1  15 gDyFGssVaisgd.......tavVGAygdddngt.nsGsaYv 48 
                 +D+FG ++a  gd       ++ +GA + d +g  ++G +Y+
  MMETSP0890-20130614|6080_1 175 QDEFGGAIANLGDlngdgydDLAIGAKNYDEGGIqDTGCVYI 216
                 699999999777777779955******777755426899997 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00011
   PF14312.1  14 agDyFGssVaisgd.........tavVGAygdddngtnsGsaYv 48 
                 + DyFG s+a+ g+          + VG++g +d    +G+aY+
  MMETSP0890-20130614|6080_1 244 SRDYFGESIAVLGSmnsddttvkMIAVGSPGFED----TGAAYI 283
                 68*********98888889999559*****9888....4****6 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 0.51
   PF14312.1  21 sVaisgdt.avVGAygdddngtnsGsaYvf 49 
                 s++  g+t + +G     +   + G++ +f
  MMETSP0890-20130614|6080_1 324 SISTTGNTrLAIGDDKSAN---EFGAVVIF 350
                 6777777777777553322...23777766 PP

  == domain 6    score: 11.2 bits;  conditional E-value: 9.6e-05
   PF14312.1  17 yFGssVaisgdt.avVGAygdddngtnsGsa 46 
                 +F ss+a  +   ++VG  +dd+ g +sGs+
  MMETSP0890-20130614|6080_1 398 HFASSIAFLDKKeLLVGVMYDDAAGYASGSV 428
                 899****999988*****************9 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.33
   PF14312.1  25 sgdtavVGAy..gddd.ngtnsG 44 
                 ++d a++G     dd+  +++  
  MMETSP0890-20130614|6080_1 533 DDDEALIGVQlpEDDGeTSNENQ 555
                 5667****996455554333334 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     6e-05      0.16      37      68 ..     459     490 ..     425     498 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6e-05
  PF00335.15  37 asnssksavilliiviGviililgilGcigal 68 
                 + +s+ + vil++++ G+iililgi  c+  l
  MMETSP0890-20130614|6080_1 459 SKDSTDTHVILPLVIFGIIILILGITACCYVL 490
                 34445677899999899999********9755 PP

>> PF12256.3  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.003       8.1      26      46 ..      48      68 ..      26      89 .. 0.76
   2 ?    7.6   0.1   0.00075       2.1      28      50 ..     115     137 ..     104     182 .. 0.84
   3 ?   -0.3   0.2      0.21   5.6e+02      29      42 ..     185     198 ..     172     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.003
   PF12256.3 26 qlslaDinGdGladlvlsvph 46
                  sl Di+GdG+ d+ +  p+
  MMETSP0890-20130614|6080_1 48 IASLGDIDGDGVNDVAFGAPG 68
                46899*********9985554 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00075
   PF12256.3  28 slaDinGdGladlvlsvphikek 50 
                 ++ Di+G+G+ dlv+ vp+i ++
  MMETSP0890-20130614|6080_1 115 RISDIDGNGVDDLVVGVPGIDRN 137
                 678***************99776 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.21
   PF12256.3  29 laDinGdGladlvl 42 
                 l D+nGdG  dl +
  MMETSP0890-20130614|6080_1 185 LGDLNGDGYDDLAI 198
                 78*******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.36s 00:00:01.28 Elapsed: 00:00:01.00
# Mc/sec: 1377.91
//
Query:       MMETSP0890-20130614|6092_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-49  166.3   0.0    5.1e-45  153.3   0.0    2.7  2  PF07724.9  AAA domain (Cdc48 subfamily)
    2.2e-23   82.8   0.0      1e-12   48.2   0.0    2.6  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.6e-17   62.7   0.1    9.1e-10   38.2   0.0    3.5  2  PF07728.9  AAA domain (dynein-related subfamily)
    4.7e-13   48.7   0.0    1.2e-12   47.4   0.0    1.7  1  PF10431.4  C-terminal, D2-small domain, of ClpB protein
    1.4e-11   44.9   4.2    2.5e-06   27.8   0.1    3.6  3  PF13191.1  AAA ATPase domain
    2.9e-11   43.4   1.1    0.00013   21.9   0.0    3.9  2  PF13401.1  AAA domain
    8.7e-10   38.2   0.0    3.2e-06   26.6   0.0    2.5  2  PF00158.21 Sigma-54 interaction domain
    7.2e-09   35.3   5.2    0.00023   20.8   0.1    3.7  3  PF02861.15 Clp amino terminal domain
    1.9e-07   30.8   0.0      0.012   15.3   0.0    2.7  2  PF13173.1  AAA domain
    4.2e-07   30.6   0.2     0.0066   17.1   0.0    3.1  2  PF13207.1  AAA domain
    7.1e-07   28.6   1.8     0.0056   15.8   0.2    4.2  4  PF12846.2  AAA-like domain
    1.2e-06   27.9   0.1      0.006   15.9   0.0    2.4  2  PF01695.12 IstB-like ATP binding protein
    2.5e-06   27.6   0.7      0.084   13.0   0.0    2.9  2  PF13238.1  AAA domain
    6.8e-06   25.8   0.0    2.3e-05   24.1   0.0    1.8  1  PF06309.6  Torsin
    1.8e-05   24.5   0.0      0.072   12.7   0.0    3.3  3  PF04851.10 Type III restriction enzyme, res subunit
    3.5e-05   23.6   0.0       0.34   10.6   0.0    2.5  2  PF13671.1  AAA domain
    8.4e-05   22.1   0.3        3.3    7.1   0.0    4.2  4  PF13479.1  AAA domain
    0.00022   20.3   0.0        3.1    6.7   0.0    3.4  3  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00026   20.3   0.0       0.33   10.2   0.0    2.6  2  PF13481.1  AAA domain
    0.00036   19.5   0.0      0.026   13.5   0.0    2.6  2  PF06414.7  Zeta toxin
    0.00042   20.3   0.1        1.5    8.9   0.0    3.0  3  PF00910.17 RNA helicase
    0.00046   19.7   0.0       0.54    9.7   0.0    2.5  2  PF05729.7  NACHT domain
     0.0011   18.0   0.2        9.8    5.0   0.0    3.5  3  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0041   16.7   0.4        1.8    8.2   0.0    3.5  2  PF13245.1  Part of AAA domain
     0.0058   15.7   0.1          2    7.4   0.0    2.4  2  PF02562.11 PhoH-like protein
  ------ inclusion threshold ------
      0.011   15.2   0.0        4.2    6.8   0.0    3.3  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.014   13.9   0.0      0.058   11.8   0.0    2.0  3  PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
      0.028   13.7   0.0         14    5.0   0.0    3.4  3  PF00270.24 DEAD/DEAH box helicase
      0.029   12.9   0.1       0.23   10.0   0.0    2.3  3  PF06068.8  TIP49 C-terminus
       0.05   13.4   0.0         15    5.4   0.0    2.6  2  PF13521.1  AAA domain
       0.06   12.2   0.0        1.5    7.6   0.0    2.2  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.068   11.8   0.0       0.21   10.2   0.0    1.8  2  PF03969.11 AFG1-like ATPase
      0.092   12.3   0.3         13    5.3   0.0    3.2  3  PF03266.10 NTPase
       0.12   11.4   0.0         11    5.0   0.0    2.3  2  PF03193.11 Protein of unknown function, DUF258


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012      0.47       3      77 ..     228     308 ..     226     325 .. 0.89
   2 !  153.3   0.0   1.3e-47   5.1e-45       1     171 []     509     671 ..     509     671 .. 0.97

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
                 ---EEEE-------HHHHHHHHHHTT-..........--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETG CS
   PF07724.9   3 iisilllgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEi 77 
                 +++  l+g+ gvGkt +a+ la  l+        + k+l ++++s+l  + + +   ++ +++    v  + + i+++DEi
  MMETSP0890-20130614|6092_1 228 KSNPCLIGEPGVGKTAIAEGLAIRLSTnnvpkrLNGKRLHTLEMSALVGGTKYRGEFEERLQSIINEVIDDGNTILFIDEI 308
                 6777899***************9999999999888899***********9999999999999888888888888******9 PP

  == domain 2    score: 153.3 bits;  conditional E-value: 1.3e-47
                 -----EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--............-EEEETGGG----------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT-----EE CS
   PF07724.9   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEllgRlpei 171
                 rp++s+ ++gptgvGkt++ak+lae+ f ++++++ir+d+ e++e    +h+v+r++g+ppgyvg+++gG             +l+DEi+K+h+           +++++LL +le+g+++d++gr +d++n+++I+t+++gs+ i +++    ++++++k  v ++l++ ++pE+l+R++ei
  MMETSP0890-20130614|6092_1 509 RPVASFFFAGPTGVGKTLVAKSLAETYF-GSQDAMIRFDMGEFAE----QHTVARFLGSPPGYVGFDDGGqltnavrrrphsLILFDEIEKAHS-----------DIYNALLGLLEDGRIQDAKGRVIDFTNVIVIFTSNMGSQIILQNA----ATDQDHKPLVYEALRSNFRPEFLNRIDEI 671
                 6899************************.9***************....*********************************************...........*******************************************55....569999*********************86 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.6e-15     1e-12       2     111 ..     232     344 ..     231     364 .. 0.74
   2 !   31.8   0.0     3e-10   1.2e-07       3     111 ..     516     633 ..     514     644 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.6e-15
                 EEE-------HHHHHHHHHHC..........THEEEEEECCSSS..SST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS CS
  PF00004.24   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr 111
                 +l+G pG+GKT++a+ +a  l          g ++ ++++s l+   ky ge e++++ +++e+      +ilfiDEi+ l+++    + e + +++n L t+l +         v+gat+ 
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLstnnvpkrlnGKRLHTLEMSALVggTKYRGEFEERLQSIINEVIDDG-NTILFIDEIHTLIGAG---AGEGAIDAANILKTALARSGI-----QVLGATTL 344
                 79******************9444444333323355555555554478***************65554.6***************...88999999***9999998766.....47777765 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3e-10
                 EE-------HHHHHHHHHHC...THEEEEEECCSSSSS............T-H.HHHHHHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT........S.TEEEEEE-SS CS
  PF00004.24   3 lyGppGtGKTllakavakel...gvefleisgsellsk............yvg.esekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk........eskvivigatnr 111
                 + Gp G+GKTl+ak++a++    +  ++++++ e+ ++            yvg +   ++ + +++      p s +++DEi++ +++             n+Ll  l++ + +          +vivi ++n 
  MMETSP0890-20130614|6092_1 516 FAGPTGVGKTLVAKSLAETYfgsQDAMIRFDMGEFAEQhtvarflgsppgYVGfDDGGQLTNAVRR---R--PhSLILFDEIEKAHSDI-----------YNALLGLLEDGRIQdakgrvidFTNVIVIFTSNM 633
                 89*****************65446889*********7789***99999997762333444444433...3..339**********8777...........***********99988888888555888888886 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     8e-07   0.00032       3      76 ..     232     310 ..     230     314 .. 0.75
   2 !   38.2   0.0   2.3e-12   9.1e-10       2     125 ..     514     635 ..     513     647 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 8e-07
                 EEE------HHHHHHHGGGGB.....S--EEEEE--TT--HHHH---B--.........--------.G-SEEEEESGGG CS
   PF07728.9   3 lLvGppGtgKselaerlaeal.....nreveyvqltrdtteedlkgrreiangttslvdsplvraar.egeilvlDEver 76 
                 +L+G+pG+gK+ +ae la +l      ++++ + l+  ++ + l+g+++++++ +++ +s++ + +     il++DE+++
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLstnnvPKRLNGKRLHT-LEMSALVGGTKYRGEFEERLQSIINEVIDdGNTILFIDEIHT 310
                 9********************8654444444555554.78899*******655555555555555555667999***985 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 2.3e-12
                 EEEE------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--............--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS-- CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreia..ngttslvd.splvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpld 125
                 ++  Gp+G+gK+ +a++lae + +++  ++ +  +  +e+ +  r +   +g   + d + l++a+r    + +++DE+e+a+s++ n+Ll lle+ r++ +  g+++++ n       + vi+t+n  +
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAKSLAETYfGSQDAMIRFDMGEFAEQHTVARFLGspPGYVGFDDgGQLTNAVRrrPHSLILFDEIEKAHSDIYNALLGLLEDGRIQ-DAKGRVIDFTN-------VIVIFTSNMGS 635
                 6889*******************5555555544443333333333333468888888835899999998888999*************************.88888888887.......*******9765 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   2.9e-15   1.2e-12       1      75 [.     677     752 ..     677     757 .. 0.92

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 2.9e-15
                 --HHHHHHHHHHHHHHHHHHHHT.TT-EEEE-HHHHHHHHC----TT---TTHHHHHHHHTHHHHHHHHH------ CS
   PF10431.4   1 LskeelkkIvdlqlkklekrlae.rgveleltdealdalaekgydpeyGARpLrriiereiedplaelilsgelke 75 
                 Ls ++l+k++dl+++++  r ++  + ++++ de++ a++ ++ d++yGARpLrr+++r +edp+ae   + +l +
  MMETSP0890-20130614|6092_1 677 LSSDDLTKVLDLAINDVLSRTKNsINRDVQVGDELRVAILLAASDKRYGARPLRRAVQRFLEDPIAESAFASHLDP 752
                 899******************987889***************************************9887776665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   6.2e-09   2.5e-06       1      58 [.     208     263 ..     208     335 .. 0.75
   2 !   16.3   0.0   2.2e-05    0.0089       4      48 ..     485     536 ..     482     554 .. 0.85
   3 ?   -1.7   0.0       7.1   2.9e+03     129     157 ..     580     609 ..     551     628 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 6.2e-09
   PF13191.1   1 elvGRereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagk 58 
                 ++vGR++ +e++l+ l r + ++p  +++G++G+GK+++++ la ++  +++ +   +
  MMETSP0890-20130614|6092_1 208 PCVGRDAIIERVLQSLVRRRKSNP--CLIGEPGVGKTAIAEGLAIRLSTNNVPKRLNG 263
                 58***************9999986..79************998877776666555444 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.2e-05
   PF13191.1   4 GRereleaLlaalrrvsegsp.......lllvtGpsGiGKSsLlrelakpil 48 
                 G    ++++++a+rr++ g +       ++++ Gp G+GK+ ++++la++ +
  MMETSP0890-20130614|6092_1 485 GQHVAIKSIAKAIRRARIGLRppnrpvaSFFFAGPTGVGKTLVAKSLAETYF 536
                 66677999999****99977778999*99*****************887766 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 7.1
   PF13191.1 129 rrpk.lvlvlDDlqwadresldlLealler 157
                 rr++  ++++D++  a ++  ++L+ lle 
  MMETSP0890-20130614|6092_1 580 RRRPhSLILFDEIEKAHSDIYNALLGLLED 609
                 333348999999999999999999999987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.2e-07   0.00013       8     128 ..     232     348 ..     224     351 .. 0.77
   2 !   16.2   0.1   1.9e-05    0.0077       9     113 ..     516     609 ..     512     631 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.2e-07
   PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkel.lqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL......s..eealeelrsllddetgvklvlvGtp.ele 128
                 +++Ge+GvGKT  ++ la +l        +++ v   ++ +   ++l +++l++  ++  +    +e+l + ++e++++  t +l iDE++ L          +a + l++ l  ++g++++ + t  e +
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRL--------STNNVPKRLNGKR-LHTLeMSALVGGTKYRGEF---EERLQSIINEVIDDGNT-ILFIDEIHTLigagagEgaIDAANILKTALA-RSGIQVLGATTLnEYR 348
                 79*****************98........6666655555555.5555566666666666666...88888999999999999.*********9887765156999999999999.9999998776665555 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.9e-05
   PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrslldd 113
                 + G++GvGKT++++ la+++        +   ++++  + +++    +++++ lg+p+       +   +l++a+rrr + l++ DE++  + + ++ l  ll+d
  MMETSP0890-20130614|6092_1 516 FAGPTGVGKTLVAKSLAETYFGS-----QDAMIRFDMGEFAEQ----HTVARFLGSPPGY--VGFDDGGQLTNAVRRRPHSLILFDEIEKAHSDIYNALLGLLED 609
                 67****************98532.....555556666666644....4556666666666..55557789999*****************999999999888875 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0019      0.77      20     105 ..     226     311 ..     210     316 .. 0.74
   2 !   26.6   0.0   7.9e-09   3.2e-06      23     143 ..     512     633 ..     483     653 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0019
                 TS-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH-----..-------S-----TTTG----EEEET---- CS
  PF00158.21  20 ktdltvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhek..GaFtGAekekkGlfekadgGtLfLDeigel 105
                 + +++  + Ge G+GK+ +A+ +  + + ++ p  ++n ++  ++L +s L G +k  G F    ++    +    + +Lf+Dei++l
  MMETSP0890-20130614|6092_1 226 RRKSNPCLIGEPGVGKTAIAEGLAIRLSTNNVP-KRLN-GKRLHTLEMSALVGGTKyrGEFEERLQSIINEVIDDGNTILFIDEIHTL 311
                 445667789************997766655544.4566.4556788999999976433888888888888888888889999999987 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 7.9e-09
                 S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH------------S---..--TTTG----EEEET-----HHHHHHHHHHHH---BE------EB-----EEEE-SS CS
  PF00158.21  23 ltvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekk..GlfekadgGtLfLDeigelplelQekLlrvlqegeverlGsekeikvdvriiaatne 143
                 ++ +  G +G+GK+l+A+++ e+   ++  ++++++++++e+   +++ G   G + G ++ ++   ++++  ++ +++Dei++   ++ + Ll +l++g+++   ++    ++v +i+++n 
  MMETSP0890-20130614|6092_1 512 ASFFFAGPTGVGKTLVAKSLAETYFGSQDAMIRFDMGEFAEQHTVARFLGSPPG-YVGFDDGGQltNAVRRRPHSLILFDEIEKAHSDIYNALLGLLEDGRIQDAKGRVIDFTNVIVIFTSNM 633
                 778899********************************************9998.777766554457788888999**************************999888888888888888775 PP

>> PF02861.15  Clp amino terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.2e-05     0.017       1      45 [.      30      73 ..      30      78 .. 0.95
   2 !   20.8   0.1   5.8e-07   0.00023       2      50 ..     118     167 ..     117     170 .. 0.79
   3 ?   -1.8   0.1       6.9   2.8e+03      20      52 ..     470     501 ..     470     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.2e-05
                HHHHHHHTTBSEE-HHHHHHHHTTSCTSHHHHHHHHTT--HHHHH CS
  PF02861.15  1 AqelAkelgdqyistEHLLLALleeddgiaariLkkaGvdlealr 45
                Aq++ ++lg  +++tEH+++++l  + g a+ +L+ a++ l++++
  MMETSP0890-20130614|6092_1 30 AQQETRRLGMTEVGTEHVFMGVLAFP-GNAGGALRTAKIKLADVQ 73
                9*************************.99**********999987 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 5.8e-07
                 HHHHHHTTBSEE-HHHHHHHHTTSCTS.HHHHHHHHTT--HHHHHHHHHH CS
  PF02861.15   2 qelAkelgdqyistEHLLLALleeddg.iaariLkkaGvdlealreaiek 50 
                   +A   g +++s+EHLLLALl+++++   a++L  + vd++al + + k
  MMETSP0890-20130614|6092_1 118 LNEADTTGSAEVSSEHLLLALLKDGSSkSVASVLDYLQVDVAALDTSVRK 167
                 567778899**************997745788888888888888777665 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 6.9
                 HHHTTSCTSHHHHHHHHTT--HHHHHHHHHHHH CS
  PF02861.15  20 LALleeddgiaariLkkaGvdlealreaieklr 52 
                 LALl+ +d + ++++ ++ v ++ + +ai ++r
  MMETSP0890-20130614|6092_1 470 LALLDLEDTLHRSVIGQH-VAIKSIAKAIRRAR 501
                 799999999888888876.99999999997765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00025       0.1       6      74 ..     232     318 ..     228     366 .. 0.65
   2 !   15.3   0.0     3e-05     0.012       8      87 ..     517     610 ..     513     622 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00025
   PF13173.1   6 vitGpRrvGKttllkqlakellkeesilyinlddeel..........rkla.dpe..llelfleklkekkkylflDEiqev......p 74 
                 +++G  +vGKt +++ la +l +++    +n ++ ++          + ++ ++e  l++++ e + +++++lf+DEi+ +      +
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLSTNNVPKRLNGKRLHTlemsalvggtK-YRgEFEerLQSIINEVIDDGNTILFIDEIHTLigagagE 318
                 5788899*******9999888844444455555544433333333322.222333434444444467799*********984544441 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3e-05
   PF13173.1   8 tGpRrvGKttllkqlakell.keesilyinlddeel......rkladpe..............llelfleklkekkkylflDEiqevp.ewedalkslvddg 87 
                  Gp +vGKt ++k la++++ +++ ++ +++ + ++      +                    l ++++++    ++++++DEi ++  ++++al +l++dg
  MMETSP0890-20130614|6092_1 517 AGPTGVGKTLVAKSLAETYFgSQDAMIRFDMGEFAEqhtvarF-----LgsppgyvgfddggqLTNAVRRR---PHSLILFDEIEKAHsDIYNALLGLLEDG 610
                 69**************999977777777777665443333220.....13333444432223233333333...7789********9648999999999977 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0     0.002      0.81       3      33 ..     232     274 ..     231     368 .. 0.68
   2 !   17.1   0.0   1.6e-05    0.0066       4      35 ..     516     562 ..     514     773 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.002
                 --B--TT---HHHHHHHHHHS.........T...EEEEEGGGB CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl.........g...lpvlslddl 33 
                 +++G pG+GK+ +a+ La rl         +   l  l++++l
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLstnnvpkrlNgkrLHTLEMSAL 274
                 789**************99985552222222233334555552 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.6e-05
                 -B--TT---HHHHHHHHHHS.....TEEEEEGGGB-..........- CS
   PF13207.1   4 itGppGsGKsTlakeLaerl.....glpvlslddll..........r 35 
                 + Gp+G+GK+ +ak Lae +      ++ ++++++            
  MMETSP0890-20130614|6092_1 516 FAGPTGVGKTLVAKSLAETYfgsqdAMIRFDMGEFAeqhtvarflgS 562
                 67****************76655443667888884345555555442 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.8   7.4e+02      82     129 ..      81     128 ..      56     173 .. 0.74
   2 ?    3.3   0.0     0.087        35       5      30 ..     232     257 ..     228     262 .. 0.85
   3 ?    5.0   0.0     0.026        11     245     268 ..     294     323 ..     262     342 .. 0.81
   4 !   15.8   0.2   1.4e-05    0.0056       3     205 ..     513     763 ..     512     770 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.8
   PF12846.2  82 a..dphsreldlllalletdselrnrpledeeeaalsralrelyeeegia 129
                 +   p+sre + l +l++   e++  p ++  +a+++ al+e+ ++    
  MMETSP0890-20130614|6092_1  81 QtsPPLSRETKKLEDLFN--REQDPLPFTPKSKALFRLALNEADTTGSAE 128
                 044789999999999999..888888888899999999999888776665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.087
   PF12846.2   5 lilGppGsGKSvllkklvlqllargp 30 
                 +++G+pG GK+  +  l+ +l+ +++
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLSTNNV 257
                 689***********999999887775 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.026
   PF12846.2 245 d......kllviDEahrllgspegadflde 268
                 +      ++l+iDE h l+g+++g  ++d+
  MMETSP0890-20130614|6092_1 294 EviddgnTILFIDEIHTLIGAGAGEGAIDA 323
                 055555599************999888875 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 1.4e-05
   PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvviiDpggeys...glaralgg..qvidlgegkgislNPfdigpteagaekleaea.....................dphsreldllla..lle....tdselrnrpledeeeaalsralrelyeeegia.............tlaqrqayPtlgdllea.lreeeeelaeealarde...............rreaaeelalalerlldgalge.lFdgpttfdldldariivfd 205
                 ++++ Gp+G GK+  +k+l++ +      ++ +D+g e++   + ar lg+   ++ ++ g+    N  + +p +       +e                      d+++r +d+     +++    +++ l+n  ++++++ ++ +alr  ++ e                ++        l+++l++ +++   + ++  +++                  r  a++l++a+ r+l++ ++e  F+ + + d+++   ii fd
  MMETSP0890-20130614|6092_1 513 SFFFAGPTGVGKTLVAKSLAETYFGSQDAMIRFDMG-EFAeqhTVARFLGSppGYVGFDDGGQL-TNAVRRRPHSLILF---DEIekahsdiynallglledgriqDAKGRVIDFTNVivIFTsnmgSQIILQNAATDQDHKPLVYEALRSNFRPEFLNrideiiifdmlssDD--------LTKVLDLaINDVLSRTKNSINRDVQvgdelrvaillaasdKRYGARPLRRAVQRFLEDPIAEsAFASHLDPDDSSP-LIIDFD 763
                 79*********************************5.555588999999623466666666666.55555444221111...11121234445555556666666555555555555543333677777777777777788888888888666666665555556665444311........4456666666666666666666666666677777777778999999999999999999999988999986666555.555555 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-05     0.006      45      76 ..     226     257 ..     210     355 .. 0.76
   2 !    9.6   0.0    0.0012      0.48      50      69 ..     514     533 ..     509     549 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.5e-05
  PF01695.12  45 eqaenlvllGpsGvGKthlAialgveavragl 76 
                 ++++n +l+G +GvGKt +A +l+++  ++++
  MMETSP0890-20130614|6092_1 226 RRKSNPCLIGEPGVGKTAIAEGLAIRLSTNNV 257
                 6789******************9998766554 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0012
  PF01695.12  50 lvllGpsGvGKthlAialgv 69 
                 + + Gp+GvGKt +A +l+ 
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAKSLAE 533
                 6789*************986 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00021     0.084       2      65 ..     232     297 ..     232     318 .. 0.62
   2 !   12.1   0.0   0.00041      0.16       3      21 ..     516     534 ..     515     665 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00021
   PF13238.1   2 litGtpGvGKtTlakeLaerl..gdvlrdlakengleeevddkidtkeskeldedkldelldklee 65 
                 ++ G pGvGKt +a+ La rl    v + l+ ++    e    +   +++ + e++l+++++++++
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLstNNVPKRLNGKRLHTLEMSALVGGTKYRGEFEERLQSIINEVID 297
                 689**************9998763333333333333344444445555555555555555555555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00041
   PF13238.1   3 itGtpGvGKtTlakeLaer 21 
                 ++G++GvGKt +ak Lae 
  MMETSP0890-20130614|6092_1 516 FAGPTGVGKTLVAKSLAET 534
                 79**************986 PP

>> PF06309.6  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.8e-08   2.3e-05      14      78 ..     470     536 ..     462     552 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.8e-08
   PF06309.6  14 anleeLekdlekklfGqhlvkklvvksvk.aylenekpkkpLv.lsfhGwtGtGknfvaeiiaenly 78 
                   l +Le  l+++++Gqh++ k++ k+++ a +    p++p++ + f G tG Gk  va+ +ae  +
  MMETSP0890-20130614|6092_1 470 LALLDLEDTLHRSVIGQHVAIKSIAKAIRrARIGLRPPNRPVAsFFFAGPTGVGKTLVAKSLAETYF 536
                 5677899*********************73778888999998735678***************9987 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.029        12      11      51 ..     215     254 ..     211     259 .. 0.86
   2 ?    1.6   0.0      0.47   1.9e+02     126     161 ..     278     314 ..     258     343 .. 0.70
   3 !   12.7   0.0   0.00018     0.072       8      49 ..     486     535 ..     481     546 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.029
  PF04851.10  11 aienllesiekedekkrglivmaTGtGKTlvaasliarlar 51 
                  ie++l+s+ +  +k + ++  + G+GKT +a  l+ rl +
  MMETSP0890-20130614|6092_1 215 IIERVLQSLVRR-RKSNPCLIGEPGVGKTAIAEGLAIRLST 254
                 588999999999.99****************9887777765 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.47
  PF04851.10 126 leeeeend.eskseslealldefdviiiDEaHrlsak 161
                  + + e +   +s+ +e  +d + +++iDE H l   
  MMETSP0890-20130614|6092_1 278 TKYRGEFEeRLQSIINEVIDDGNTILFIDEIHTLIGA 314
                 555555554444477788888999********98765 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 0.00018
  PF04851.10   8 Qeeaienllesieke........dekkrglivmaTGtGKTlvaasliarl 49 
                 Q  ai++++++i+++        +  +++ ++ +TG+GKTlva sl++ +
  MMETSP0890-20130614|6092_1 486 QHVAIKSIAKAIRRAriglrppnRPVASFFFAGPTGVGKTLVAKSLAETY 535
                 8899999999999999999999888899***************9877665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012      0.46       4      72 ..     233     301 ..     232     309 .. 0.68
   2 !   10.6   0.0   0.00084      0.34       3      79 ..     515     624 ..     514     631 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
   PF13671.1   4 lvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfgtdqqskt.....dytrvlkrlyqilnklarkalsagrs 72 
                 l+G pG GK+  ae+l+     +rls++++ krl+g+  ++++       t+ + ++ ++l+ ++ +++ +g++
  MMETSP0890-20130614|6092_1 233 LIGEPGVGKTAIAEGLA-----IRLSTNNVPKRLNGKRLHTLEmsalvGGTKYRGEFEERLQSIINEVIDDGNT 301
                 6899***********99.....9***********9966665552222323334444555555555555555555 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00084
   PF13671.1   3 llvGlpGsGKstlaerllkklgyvrlsqdtlrk.rlfg.tdqqskt..................................dytr.vlkrlyqilnklarkal.sagrsvivdatn 79 
                 ++ G+ G GK+ +a++l+    +++ sqd++++  + +    ++ t                                  d ++ +++++y++l++l+++ + ++ +  ++d tn
  MMETSP0890-20130614|6092_1 515 FFAGPTGVGKTLVAKSLA---ETYFGSQDAMIRfDMGEfA--EQHTvarflgsppgyvgfddggqltnavrrrphslilfDEIEkAHSDIYNALLGLLEDGRiQDAKGRVIDFTN 624
                 799*************99...4567788875552554432..2222345666667777777777777777777777777644443777788888888887554777778888887 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.027        11       4      23 ..     229     248 ..     226     309 .. 0.75
   2 !    7.1   0.0    0.0082       3.3       8      28 ..     516     536 ..     512     553 .. 0.85
   3 ?   -0.2   0.0       1.4   5.6e+02      58      98 ..     664     703 ..     599     709 .. 0.68
   4 ?    3.7   0.0     0.087        35      24      50 ..     755     781 ..     744     805 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.027
   PF13479.1   4 ikvliYGkpGiGKTslaktl 23 
                  + ++ G+pG+GKT  a  l
  MMETSP0890-20130614|6092_1 229 SNPCLIGEPGVGKTAIAEGL 248
                 566899********999877 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0082
   PF13479.1   8 iYGkpGiGKTslaktlpktlf 28 
                   G+ G+GKT +ak+l +t f
  MMETSP0890-20130614|6092_1 516 FAGPTGVGKTLVAKSLAETYF 536
                 579*************88876 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.4
   PF13479.1  58 alkeleedlaeydtlviDsitklerlilaeilkqkekkskr 98 
                 +l+ + +++  +d+l  D +tk+ +l+++++l++++++++r
  MMETSP0890-20130614|6092_1 664 FLNRI-DEIIIFDMLSSDDLTKVLDLAINDVLSRTKNSINR 703
                 44444.33336778888888999999999998877776665 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.087
   PF13479.1  24 pktlfldleagakavkdlkrgdsvdvr 50 
                 +++l++d++a+++ v  +++ +s++++
  MMETSP0890-20130614|6092_1 755 SSPLIIDFDASNDNVLCTAGSKSWRIA 781
                 79**********999999999999987 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0078       3.1      26      65 ..     232     271 ..     227     302 .. 0.78
   2 !    6.6   0.0    0.0083       3.4      25      43 ..     514     532 ..     508     558 .. 0.90
   3 ?    2.5   0.0      0.15        60     107     197 ..     584     672 ..     562     682 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0078
  PF01078.16  26 llvGppGsGKtmlakrlpsllpplseeealevakiasvag 65 
                  l+G pG GKt +a+ l+  l+  +  + l+ +++++++ 
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLSTNNVPKRLNGKRLHTLEM 271
                 699************9999888888777777777776665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0083
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 ++++Gp G GKt++ak l+
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAKSLA 532
                 7899************997 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.15
  PF01078.16 107 nGvLfLDElpefkrkvleaLRePledgevtisrakakveyparfqlvaamNpcpcgklgdkekecacspkeierYlsklsgplldRidlqv 197
                 + ++++DE+ + ++++ +aL   ledg+++ ++  + +++ +++ ++ + N      l+++ ++   +p   e  +s+    +l+Rid  +
  MMETSP0890-20130614|6092_1 584 HSLILFDEIEKAHSDIYNALLGLLEDGRIQDAKG-RVIDF-TNVIVIFTSNMGSQIILQNAATDQDHKPLVYEALRSNFRPEFLNRIDEII 672
                 667889*********************9875543.34555.78899999999988888888888888888888888888888888888555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00081      0.33      32      64 ..     227     258 ..     198     339 .. 0.65
   2 !    7.3   0.0    0.0061       2.5      34      54 ..     512     532 ..     486     558 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00081
   PF13481.1  32 rgsltllaGapgtGKStlalqlaaavatGepfl 64 
                 r+s  +l+G+pg+GK+ +a  la++++t  +++
  MMETSP0890-20130614|6092_1 227 RKSNPCLIGEPGVGKTAIAEGLAIRLSTN-NVP 258
                 5566699******************9963.232 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0061
   PF13481.1  34 sltllaGapgtGKStlalqla 54 
                 +  ++aG++g+GK+ +a +la
  MMETSP0890-20130614|6092_1 512 ASFFFAGPTGVGKTLVAKSLA 532
                 56789************9998 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.098        39      21      43 ..     233     254 ..     221     268 .. 0.83
   2 !   13.5   0.0   6.4e-05     0.026      14      83 ..     508     589 ..     495     604 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.098
   PF06414.7  21 lgGqpGAGKtslaellleelaag 43 
                 l G pG GKt++ae l  +l+ +
  MMETSP0890-20130614|6092_1 233 LIGEPGVGKTAIAEGLAIRLS-T 254
                 669***********9998884.3 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 6.4e-05
   PF06414.7  14 ekpka.vllgGqpGAGKtslaellleela..agnivridaDelrkyh.........payrelekkdpkeaseltqkdaselv 83 
                  +p+a ++ +G++G GKt +a+ l e +   ++ ++r+d  e+ ++h         p y ++   ++ +++   ++++ +l 
  MMETSP0890-20130614|6092_1 508 NRPVAsFFFAGPTGVGKTLVAKSLAETYFgsQDAMIRFDMGEFAEQHtvarflgspPGYVGFDDGGQLTNAVRRRPHSLILF 589
                 566653789**************9999988*****************77777777766666555555555555555555555 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0075         3       2      25 ..     232     255 ..     231     271 .. 0.85
   2 !    8.9   0.0    0.0037       1.5       2      22 ..     515     535 ..     514     554 .. 0.88
   3 ?   -1.8   0.0       7.7   3.1e+03      94     107 .]     620     633 ..     613     633 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0075
  PF00910.17   2 wlyGpsgeGKStlakeLakallkk 25 
                 +l G++g+GK+ +a+ La +l+++
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLSTN 255
                 689**************9999854 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0037
  PF00910.17   2 wlyGpsgeGKStlakeLakal 22 
                 ++ Gp+g+GK+++ak+La++ 
  MMETSP0890-20130614|6092_1 515 FFAGPTGVGKTLVAKSLAETY 535
                 689*************99865 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 7.7
  PF00910.17  94 tlftSkvvivtsNv 107
                 + ft ++vi tsN+
  MMETSP0890-20130614|6092_1 620 IDFTNVIVIFTSNM 633
                 67999********5 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0014      0.54       4      31 ..     232     259 ..     230     271 .. 0.91
   2 !    7.2   0.0    0.0077       3.1       5      95 ..     516     597 ..     513     614 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0014
   PF05729.7   4 ilqGeaGsGKTtLlqklasawakgklpq 31 
                 +l Ge+G+GKT+ + +la  + +++ p+
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLSTNNVPK 259
                 789***************9999988876 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0077
   PF05729.7   5 lqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrsknarsladlLfsqlpepaapvsevwivllelperlLlilDglDelvs 95 
                   G+ G+GKT  +++la++   ++      + ++ + ++e+ ++    ++a++L s+   ++ +    +++ +++++  L+++D +++++s
  MMETSP0890-20130614|6092_1 516 FAGPTGVGKTLVAKSLAETYFGSQ------DAMIRFDMGEFAEQH---TVARFLGSPPGYVGFDDGGQLTNAVRRRPHSLILFDEIEKAHS 597
                 67**************98877666......556777777777775...5677777776666666666666677777777777777777666 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.024       9.8      54      76 ..     232     254 ..     204     263 .. 0.82
   2 ?    3.6   0.0     0.062        25     101     113 ..     299     311 ..     283     316 .. 0.73
   3 ?    4.8   0.0     0.027        11      26      72 ..     483     533 ..     464     543 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.024
   PF05496.7  54 llyGpPGlGkttlakiiakelgv 76 
                  l+G PG+Gkt++a+ +a  l +
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIRLST 254
                 478***********999887765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.062
   PF05496.7 101 ekdvlfideihrl 113
                  + +lfideih l
  MMETSP0890-20130614|6092_1 299 GNTILFIDEIHTL 311
                 3679*******88 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.027
   PF05496.7  26 yigqekvkeklkifieaak....kreealdhvllyGpPGlGkttlakiiak 72 
                  igq+   ++++ +i+ a+      ++++   +++Gp G+Gkt +ak +a+
  MMETSP0890-20130614|6092_1 483 VIGQHVAIKSIAKAIRRARiglrPPNRPVASFFFAGPTGVGKTLVAKSLAE 533
                 566666666666666666511113467788899*************99886 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0045       1.8       9      35 ..     229     252 ..     218     267 .. 0.71
   2 ?    4.6   0.0      0.06        24      16      35 ..     517     535 ..     493     556 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0045
   PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaall 35 
                  np+l+  G PG GKT ++a + a +l
  MMETSP0890-20130614|6092_1 229 SNPCLI--GEPGVGKT-AIAEGLAIRL 252
                 366655..********.8888777665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.06
   PF13245.1  16 tGgPGtGKTttlaaiiaall 35 
                  G+ G GKT ++a+  a+ +
  MMETSP0890-20130614|6092_1 517 AGPTGVGKT-LVAKSLAETY 535
                 69*******.8887777776 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.005         2      19      98 ..     228     310 ..     216     328 .. 0.72
   2 ?    5.8   0.0     0.016       6.5      22      42 ..     514     534 ..     508     542 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.005
  PF02562.11  19 ndivfaiGpaGtGKTylavalavealkkkkvkriiltRpav.eageelGfl..pgdleekvdpylrplydaLkdllgaekvek 98 
                 ++  ++iG+ G GKT +a  la+++ +++  kr+   R +  e+   +G +  +g+ ee+++ +++ ++d  + +l  +++++
  MMETSP0890-20130614|6092_1 228 KSNPCLIGEPGVGKTAIAEGLAIRLSTNNVPKRLNGKRLHTlEMSALVGGTkyRGEFEERLQSIINEVIDDGNTILFIDEIHT 310
                 5566789******************9999999987777554366666654311577777777777777776666665555555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.016
  PF02562.11  22 vfaiGpaGtGKTylavalave 42 
                  f +Gp+G GKT++a +la +
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAKSLAET 534
                 5889***********998855 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.14        57       4      25 ..     233     254 ..     231     263 .. 0.85
   2 ?    6.8   0.0     0.011       4.2      63     111 ..     584     632 ..     514     637 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.14
   PF07726.6   4 legvPGlaktllvkalakaldl 25 
                 l g PG++kt +++ la  l++
  MMETSP0890-20130614|6092_1 233 LIGEPGVGKTAIAEGLAIRLST 254
                 5589************988765 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.011
   PF07726.6  63 anllladeinrappktqsalleameerqvtvegethklpepflvlatqn 111
                 ++l+l dei +a + +  all  +e+ ++  ++ +    ++ +v+ t n
  MMETSP0890-20130614|6092_1 584 HSLILFDEIEKAHSDIYNALLGLLEDGRIQDAKGRVIDFTNVIVIFTSN 632
                 46899******************99999976554444444555666655 PP

>> PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   9.3e+02      14      35 ..     227     248 ..     221     254 .. 0.83
   2 ?   11.8   0.0   0.00014     0.058       9      59 ..     504     554 ..     496     598 .. 0.83
   3 ?   -3.6   0.0         7   2.8e+03     225     252 ..     684     711 ..     682     712 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.3
   PF10412.4  14 etqhilivGttGtGKtqalrel 35 
                  +++ +++G  G GKt + + l
  MMETSP0890-20130614|6092_1 227 RKSNPCLIGEPGVGKTAIAEGL 248
                 56777899********999887 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00014
   PF10412.4   9 l.pkesetqhilivGttGtGKtqalrelldqirargdraiiyDkkGefvekf 59 
                 l p ++ +  +++ G tG GKt + ++l ++    +d +i +D  Gef e++
  MMETSP0890-20130614|6092_1 504 LrPPNRPVASFFFAGPTGVGKTLVAKSLAETYFGSQDAMIRFDM-GEFAEQH 554
                 5577889999********************************95.7888776 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 7
   PF10412.4 225 lwldlaikallslpesrerrlWfflDEl 252
                  +ldlai+ +ls+++++ +r   + DEl
  MMETSP0890-20130614|6092_1 684 KVLDLAINDVLSRTKNSINRDVQVGDEL 711
                 589**********999999988888887 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.23        94      14      40 ..     228     254 ..     213     279 .. 0.73
   2 ?    1.6   0.0      0.36   1.5e+02     124     165 ..     300     342 ..     282     350 .. 0.63
   3 ?    5.0   0.0     0.034        14      17      32 ..     514     529 ..     483     557 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.23
                 S-EEEEEC-TT---HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  14 ggdvlvaaeTGsGKTlaflipvlqill 40 
                 +++ ++ +e G GKT+++   +++  +
  MMETSP0890-20130614|6092_1 228 KSNPCLIGEPGVGKTAIAEGLAIRLST 254
                 46788999*********9877776544 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.36
                 EEEEEECTHHHHHCTTTHH...HHHHHHHHSHHTTTSEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24 124 vrllVlDEadrllsqgfsd...qlnqilqilcdgkrlqvivlSAT 165
                   +l +DE+++l   g ++   +  +il+    ++r  + vl AT
  MMETSP0890-20130614|6092_1 300 NTILFIDEIHTLIGAGAGEgaiDAANILKTA--LARSGIQVLGAT 342
                 67889*********99999545444454443..233335555555 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.034
                 EEEEC-TT---HHHHH CS
                 xxxxxxxxxxxxxxxx RF
  PF00270.24  17 vlvaaeTGsGKTlafl 32 
                  + a++TG GKTl++ 
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAK 529
                 57899********986 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00057      0.23      38      94 ..     219     272 ..     198     275 .. 0.80
   2 ?   -1.6   0.0       1.8   7.4e+02     265     290 ..     291     311 ..     278     312 .. 0.65
   3 ?   -1.3   0.0       1.5     6e+02      52      72 ..     513     533 ..     474     541 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00057
   PF06068.8  38 vivelikekklaGravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevk 94 
                 v+ +l++ +k       l G+pg Gkta+a +++  l+++     l+g  +++le++
  MMETSP0890-20130614|6092_1 219 VLQSLVRRRKSN-P--CLIGEPGVGKTAIAEGLAIRLSTNNVPKRLNGKRLHTLEMS 272
                 556667666632.3..356*******************7666689999999999986 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.8
   PF06068.8 265 kvakyveegkaeivpGvlfiDevhml 290
                 ++++ +++g+      +lfiDe+h l
  MMETSP0890-20130614|6092_1 291 IINEVIDDGN-----TILFIDEIHTL 311
                 4444555554.....58*******76 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.5
   PF06068.8  52 avLlaGppgtGktalaiaisk 72 
                 +  +aGp+g Gkt +a ++++
  MMETSP0890-20130614|6092_1 513 SFFFAGPTGVGKTLVAKSLAE 533
                 46799********99988775 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.039        16       3      22 ..     232     251 ..     230     262 .. 0.81
   2 ?    5.4   0.0     0.037        15       3      22 ..     515     534 ..     513     557 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.039
   PF13521.1   3 vitGgpstGKTtlleaLaar 22 
                 +++G p++GKT ++e La r
  MMETSP0890-20130614|6092_1 232 CLIGEPGVGKTAIAEGLAIR 251
                 799**************954 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.037
   PF13521.1   3 vitGgpstGKTtlleaLaar 22 
                  + G+ ++GKT +++ La++
  MMETSP0890-20130614|6092_1 515 FFAGPTGVGKTLVAKSLAET 534
                 588***************97 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0036       1.5       8     122 ..     235     338 ..     231     339 .. 0.78
   2 ?    2.0   0.0      0.18        74       4      25 ..     514     535 ..     512     596 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0036
   PF09848.4   8 GvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrlltkkdqkekksgenqlkellkrakvvv 122
                 G++G GKt +a  l+ +l   + ++  + l g +     + +al + +  k ++e  ++++s+in++      ++  +++++DE h l   +  +     +n lk+ l r+ + v
  MMETSP0890-20130614|6092_1 235 GEPGVGKTAIAEGLAIRL---STNNVPKRLNGKRLHTLEM-SALVGGT--KYRGEFEERLQSIINEVI-----DDGNTILFIDEIHTLIGAGAGEGAIDAANILKTALARSGIQV 338
                 9*****************...4445555444443333333.4454544..688899999*******99.....788899**********99999999999999999999987655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.18
   PF09848.4   4 ilvtGvaGtGKtvvalnllael 25 
                 ++  G  G GKt+va +l+ ++
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAKSLAETY 535
                 677899**********999887 PP

>> PF03969.11  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.2   2.9e+03      91     136 ..     263     308 ..     196     312 .. 0.55
   2 ?   10.2   0.0   0.00053      0.21      21      82 ..     467     531 ..     461     607 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 7.2
  PF03969.11  91 krrvhfhafmarvhdeltklrkekdplaivadrlane.arvLcfDEf 136
                 ++r+h+   m ++ +  +++ + ++ l+ +++++ ++  ++L +DE 
  MMETSP0890-20130614|6092_1 263 GKRLHTL-EMSALVGGTKYRGEFEERLQSIINEVIDDgNTILFIDEI 308
                 3444432.344444445555555566666666655541345566765 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00053
  PF03969.11  21 aqanavealerltqelaaaelvrqas...aalgklfgrkrsaepvrglYlwGgvGrGKtyLldlf 82 
                 aq  a  +le   ++    ++v+ +s   a  +  +g ++ ++pv ++++ G+ G+GKt +  + 
  MMETSP0890-20130614|6092_1 467 AQSLALLDLEDTLHRSVIGQHVAIKSiakAIRRARIGLRPPNRPVASFFFAGPTGVGKTLVAKSL 531
                 6666777777666655555555554446566677888899999****************886655 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.033        13       4      28 ..     233     257 ..     231     263 .. 0.88
   2 ?    0.2   0.0       1.2   4.9e+02      80     104 ..     283     308 ..     273     311 .. 0.78
   3 ?    2.3   0.0      0.27   1.1e+02       2      21 ..     514     533 ..     513     540 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.033
                 EE-------HHHHHHHHHH-...-- CS
  PF03266.10   4 iTGepgvGKtTlvkkvlellksegv 28 
                 + GepgvGKt + + ++ +l+ ++v
  MMETSP0890-20130614|6092_1 233 LIGEPGVGKTAIAEGLAIRLSTNNV 257
                 569***********99999988877 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHH.HHH-EEEE--- CS
  PF03266.10  80 efeelalpalrnal.eeadviviDEI 104
                 efee + +++++ +  +  +++iDEI
  MMETSP0890-20130614|6092_1 283 EFEERLQSIINEVIdDGNTILFIDEI 308
                 6788888888888744555******9 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.27
                 EEEE-------HHHHHHHHH CS
  PF03266.10   2 vfiTGepgvGKtTlvkkvle 21 
                 +f  G+ gvGKt + k ++e
  MMETSP0890-20130614|6092_1 514 FFFAGPTGVGKTLVAKSLAE 533
                 6889********99888876 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.028        11      36      70 ..     229     261 ..     205     277 .. 0.74
   2 ?    3.8   0.0     0.065        26      39      58 ..     515     534 ..     507     579 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.028
                 SBEEEE-------HHHHHHH--------S------ CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpeldlkvgevsekl 70 
                 +  +l+G+ GvGK+++ + l+ +  l++++v ++l
  MMETSP0890-20130614|6092_1 229 SNPCLIGEPGVGKTAIAEGLAIR--LSTNNVPKRL 261
                 45689***********9999865..6666766664 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.065
                 EEE-------HHHHHHH--- CS
  PF03193.11  39 vlvGqSGvGKSsLinallpe 58 
                 +++G++GvGK+ + ++l+++
  MMETSP0890-20130614|6092_1 515 FFAGPTGVGKTLVAKSLAET 534
                 799*******9888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.48u 0.40s 00:00:01.88 Elapsed: 00:00:01.10
# Mc/sec: 1782.02
//
Query:       MMETSP0890-20130614|6102_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       117  (0.00855764); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.72
# Mc/sec: 206.35
//
Query:       MMETSP0890-20130614|6101_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-33  115.1   0.0    7.6e-33  113.7   0.0    1.8  2  PF00857.15 Isochorismatase family


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.46   6.3e+03      24      49 ..     185     210 ..     178     232 .. 0.54
   2 !  113.7   0.0   5.5e-37   7.6e-33       1     172 [.     262     459 ..     262     461 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.46
  PF00857.15  24 avvenikkllkaarkagipviftrdv 49 
                 av +++++++k++ k++  +++t   
  MMETSP0890-20130614|6101_1 185 AVARALQDAAKKHEKNSEAIYATDTM 210
                 44555555555555554434444333 PP

  == domain 2    score: 113.7 bits;  conditional E-value: 5.5e-37
  PF00857.15   1 talvviDmqndfl.......egvleseeieavvenikkllkaarkagipviftrdvhe................leeakgdlekkkasphfepgttgaelvdelaplegdvvvdKtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlk...qafatvitt 172
                 tal+viD+q+df+        ++ ++   ++ ++ ++k+l a+r+++i++i+tr+ ++                l      + +++  ++++++++g++l d+++p +++ +vdKt  +af  tdl+ iL+  gi++l+++G + dvCV++t+r+a dlG++  +++D+++a+sp lh+a ++ ++     f+tv ++
  MMETSP0890-20130614|6101_1 262 TALLVIDLQRDFTdaggymaAMGYDVTPLAKPLSTVAKVLSACRAKKIRIIHTRQGYRpdladcpshtrqrfisLCGIDIGTTTGPLGKVLIRDQPGWQLNDSVRPFATESIVDKTACDAFLFTDLELILRTWGITNLIFCGNTLDVCVHSTLRHASDLGFQNLLLQDCCGAVSPSLHNAMIESVQvesGIFGTVANA 459
                 8******************99999*******************************************9999988555555567788999***********************************************************************************************99777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.73
# Mc/sec: 1542.86
//
Query:       MMETSP0890-20130614|6111_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-23   82.9   0.0    2.6e-23   82.3   0.0    1.2  1  PF05903.9 PPPDE putative peptidase domain
  ------ inclusion threshold ------
        1.1    7.4   5.6        1.3    7.1   3.9    1.0  1  PF09726.4 Transmembrane protein
        3.6    6.8  13.5        5.7    6.2   9.4    1.2  1  PF10500.4 Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   5.7e-27   2.6e-23      31     139 ..       9     113 ..       3     122 .. 0.94

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 5.7e-27
   PF05903.9  31 egiyhtgvevygkeyalggkekeesgitelkpkt.tsegakfresielgeTevteeevreileelsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPkwinrlarikls 139
                  g++htgv+v++ ey++       +gi++++p+  +se ++++e+i +g+   t +e+r +l+el  ++ + +Y+L+++NCnhF+d++   Ltg +iP++ nr+a+ + s
  MMETSP0890-20130614|6111_1   9 LGVFHTGVVVDNYEYSFND-----QGIFRTRPRAiESEKCDYKETIRIGSYIGTANEFRGLLNELHVDFPKGAYDLMTRNCNHFSDAFSFKLTGIHIPSHLNRIASLGAS 113
                 489**************88.....***********9999****************************************************************9988765 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.9   0.00028       1.3     290     402 ..      91     200 ..      76     208 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00028
   PF09726.4 290 yssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksaagsvssssvkkneskdkkasksssgaldskkvisglsan 402
                 +s kl+ i++ ++     ++ ++  ++s++++    + +sss+ + +++  s++++++ ++++s   p+  +s  + ++sss +++ +    +++sss a d++k+     ++
  MMETSP0890-20130614|6111_1  91 FSFKLTGIHIPSHLNRIASLGASLFGSSGTKAY---QISSSSNGRSNISDDSFNKSNHPNEEESTRTPSFWSSLFSLTTSSSPSDSPNAVAPSTSSSSAAADKRKKKELTPQQ 200
                 555666666666666666666665555555544...34578888888889999999999999999999999998888888887777666555555555555555554444443 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.4    0.0013       5.7      29      93 ..     123     199 ..     111     202 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0013
   PF10500.4  29 ksrseksrkksksskesrkkrekkkkkrrers............ssssssssssssssssssskseekrkkrkkkkk 93 
                  + s++s+ +s+ s +s +k+++ +++  +r+            sss s s  + ++s ssss++ +krkk++   +
  MMETSP0890-20130614|6111_1 123 YQISSSSNGRSNISDDSFNKSNHPNEEESTRTpsfwsslfslttSSSPSDSPNAVAPSTSSSSAAADKRKKKELTPQ 199
                 33444444444555554444444444444444445656776654555555666678999999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:01.40
# Mc/sec: 364.59
//
Query:       MMETSP0890-20130614|6114_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.4   2.1      0.033   13.9   1.4    1.2  1  PF13643.1  Domain of unknown function (DUF4145)
      0.025   13.8   0.5      0.032   13.5   0.4    1.1  1  PF00625.16 Guanylate kinase
      0.035   13.2   1.5      0.068   12.3   1.0    1.4  1  PF08558.5  Telomere repeat binding factor (TRF)
      0.038   14.0   5.1      0.053   13.6   3.6    1.1  1  PF03879.9  Cgr1 family
      0.039   13.4   1.8      0.047   13.2   1.3    1.1  1  PF08374.6  Protocadherin
      0.055   13.4   3.0      0.074   13.0   2.1    1.2  1  PF03449.10 Transcription elongation factor, N-terminal
      0.063   11.5   5.0      0.075   11.2   3.5    1.0  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
       0.34   10.2   5.4       0.41   10.0   3.8    1.1  1  PF03286.9  Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> PF13643.1  Domain of unknown function (DUF4145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   1.9e-05     0.033      32      84 ..      23      70 ..       7      72 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
   PF13643.1 32 kkgknLkkkInklvekglpeklkesldaiRvlGNdaaHelkeltkedaeelie 84
                +++++Lkkk++kl++++     k+ l++i+   Nd aH+++e+  +d++ +++
  MMETSP0890-20130614|6114_1 23 PRQEQLKKKLKKLKKDR----EKNILQQIKD-ANDDAHYEEEHRYDDINNAMD 70
                44558**********98....799*****86.6*****99*******999987 PP

>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.9e-05     0.032     122     176 ..      22      76 ..      21      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.9e-05
                 ECSHHHHHHH.TTS.HHHHHHHHHHHHHHHHHHGGG..-SEEEEE--HHHHHHHH CS
  PF00625.16 122 ppslkelqrrlksrgkeqeekiakrleaaekelqeyaeFdvvivnddldealkkl 176
                 +p +++l+++lk+  k+ e++i ++++ a+ ++++ +e+ +   n+ +d  l++ 
  MMETSP0890-20130614|6114_1  22 APRQEQLKKKLKKLKKDREKNILQQIKDANDDAHYEEEHRYDDINNAMDAYLRHA 76 
                 577899***************************9999976666688888777765 PP

>> PF08558.5  Telomere repeat binding factor (TRF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.0     4e-05     0.068     182     234 ..      34      86 ..       9      89 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-05
                 ...STTHHHHHHHHHTTS--HHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08558.5 182 erckkrrekLlniinkkdslksLlqkyswesflkellsYvsknigllvwgakk 234
                 +  k r++++l++i++ ++     +++ ++++   + +Y++  +++l w+ ++
  MMETSP0890-20130614|6114_1  34 KLKKDREKNILQQIKDANDDAHYEEEHRYDDINNAMDAYLRHAMNFLGWQESE 86 
                 334566777888*************************************9886 PP

>> PF03879.9  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.6   3.1e-05     0.053      39      88 ..      23      71 ..       7      73 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.1e-05
   PF03879.9 39 keqeaiKerekelkeEkeeerqrrieaikerraakeekeRyeklaakmha 88
                 +qe++K+++k+lk+++e++  ++i++  +  a+ ee +Ry+ +++ m a
  MMETSP0890-20130614|6114_1 23 PRQEQLKKKLKKLKKDREKNILQQIKDANDD-AHYEEEHRYDDINNAMDA 71
                4689*********************999886.6678889****9999975 PP

>> PF08374.6  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.3   2.7e-05     0.047      74     129 ..      11      68 ..       4      81 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.7e-05
   PF08374.6  74 agkke.eedfvsPkqedkqkkkkkkkkkksdkslllnivtveelk..eddeeseqkeek 129
                  gk++ +ed  +P+qe+ +kk kk kk + +k++l +i   ++    e+++++++ ++ 
  MMETSP0890-20130614|6114_1  11 TGKRQnTEDDTAPRQEQLKKKLKKLKKDR-EKNILQQIKDANDDAhyEEEHRYDDINNA 68 
                 46665599********9999999888877.56667766554443301233333444444 PP

>> PF03449.10  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.1   4.3e-05     0.074       7      49 ..      21      63 ..      15      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.3e-05
  PF03449.10  7 TaegyeklkeeleeLkkverpeiikaiaeArelGDlsENaeYk 49
                Ta   e+lk++l++Lkk + ++i ++i++A +     E   Y+
  MMETSP0890-20130614|6114_1 21 TAPRQEQLKKKLKKLKKDREKNILQQIKDANDDAHYEEEHRYD 63
                5566799*************************99999998887 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.5   4.4e-05     0.075     316     366 ..      10      60 ..       4      75 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXX CS
   PF05793.7 316 qdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsD 366
                 + ++ ++ e+++++++++l+kk kk+kk+++k+  ++ kd +d+   +++ 
  MMETSP0890-20130614|6114_1  10 RTGKRQNTEDDTAPRQEQLKKKLKKLKKDREKNILQQIKDANDDAHYEEEH 60 
                 6788999*************************9988888887776655543 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.8   0.00024      0.41      50     102 ..      13      66 ..       9      78 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00024
   PF03286.9  50 kkpkkkrkttkrkpvkkkksk..kkekekeeeeekkeeededkdteenendddek 102
                 k+++++  t++r++  kkk k  kk++ek+  ++ k+ +d+ + +ee+   dd +
  MMETSP0890-20130614|6114_1  13 KRQNTEDDTAPRQEQLKKKLKklKKDREKNILQQIKDANDDAHYEEEHRY-DDIN 66 
                 67788888999987666654411677777777787777777775555544.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1816  (0.132826); expected 273.4 (0.02)
Passed bias filter:                     1126  (0.0823581); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.96
# Mc/sec: 284.57
//
Query:       MMETSP0890-20130614|6115_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-14   53.8   0.0    1.7e-14   53.7   0.0    1.0  1  PF01323.15 DSBA-like thioredoxin domain
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.013   15.5   0.0    1.4  1  PF13098.1  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> PF01323.15  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   2.4e-18   1.7e-14      88     191 ..       2     109 ..       1     111 [. 0.89

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 2.4e-18
                 HHHHHHHHHHHHH..GHHHHHHHHHHHHHTST---SSHHHHHHHHHH----HHHHHHHCTSHHHHHHHHHHHHHHHHTT-----EEEE...---.EEE--SSSHHHHHHH CS
  PF01323.15  88 raarlllaagaeg..laekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvv...dgk.rmvfGadrldtlada 191
                 +a+rl+ +a+  g  +++ +v+elf+ ++++ + ++d+++l ++aek+G+  + + e ++++++ e    ++ + ++ gv+GvP++++    gk ++++Ga+++d + da
  MMETSP0890-20130614|6115_1   2 SAHRLIAYAETFGteKQNLLVEELFKNYFGQEKFLNDKEVLIAAAEKVGI--TGAVEIINDPKAYESTVIEQYNTYAKGVRGVPFFILeapSGKtVTLSGAQPVDAFIDA 109
                 59********9999999*********************************..55999999987777777777788999**********88855669*********99776 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0     2e-06     0.013      76     110 ..      75     108 ..      14     110 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2e-06
   PF13098.1  76 rklgvrgtPtivfldgeGklvarlpGylpaeelek 110
                  + gvrg+P ++++ ++Gk+v+ l+G+ p + + +
  MMETSP0890-20130614|6115_1  75 YAKGVRGVPFFILEAPSGKTVT-LSGAQPVDAFID 108
                 3446***************985.******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 471.01
//
Query:       MMETSP0890-20130614|6116_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.1e-152  506.7   0.1   5.9e-152  506.5   0.1    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  506.5   0.1  4.3e-156  5.9e-152       1     485 [.      28     528 ..      28     531 .. 0.98

  Alignments for each domain:
  == domain 1    score: 506.5 bits;  conditional E-value: 4.3e-156
  PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdkreellkvartslnsklssresellsklvvdAv.kiieeea..........eldvgn.igvikieggsledselieGvvldkgylspdmpkrlenpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrlesleeedlGkakkv.eeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkgenlgidaetgeiidlveag.....ilDplkvkrsalksavevasliLtidqiik 485
                 ++div++tLGP+ ++k+l++++g ++ tnd ++il+e++++hp+ak + e+++sqdeevGDGtt++++L+geLl++a+ ++++++hpt i+rg+  al+ al+  ek++++++ +  e + +++++++++k+s+r+ e + +++++A  ++ +e            e+dv++  +v+ki+gg+++d ++ +Gv+++k++++p m++r+e+p+illldc+le++k  + ++v+++ ++++++l++ ee+++++++ +iv ++ ++vi++kg++d+a+h+L k++i a+rr++k+d +rla+++gat+vsr ++++e+d+G+ +++ e+++ig++++ ++e  +++++k++t+llrg ++++l+e+er+++da+ +vk+++ +++++pGGGa+e++++k+L ++a ++ g  q+ i ++akAle+ip+tLa+N+g +   vla+lka+h ++  +gi+ etg iid+++       i+Dpl+vk +++k a+e++sliL+id+i++
  MMETSP0890-20130614|6116_1  28 VSDIVTSTLGPRAMLKLLLDPMGGVIMTNDANSILREIDVSHPAAKQMLELSRSQDEEVGDGTTSVIVLTGELLRAAIPVLERKLHPTVIVRGYAQALRVALDTCEKLAKPVDLNDIEVMNNLVMSCVGTKFSKRWGETVMNMALEATlRVARE-LgpatgggvikEVDVKRyAKVEKIPGGEISDCRVLKGVMFNKDVTHPRMRRRIEKPRILLLDCPLEYKKGeSAANVQIEVEQDWNALLRLEEEYIEHVCAEIVAARPDIVITEKGVSDLAQHYLMKANITAFRRLRKTDNNRLARACGATIVSRTDEIQESDVGTQCNLfEVRKIGDEYFAFFE--DCEDPKACTVLLRGGSKDVLNEIERNLQDAMQVVKNVVIEPKLLPGGGATEMAIAKALTDYAHTDVGVLQYPIAAVAKALEVIPRTLAKNCGAKTVRVLAQLKAKHLESGTWGINGETGDIIDMANPPagtdpIWDPLAVKIQMIKTAIEASSLILRIDDIVS 528
                 689*********************************************************************************************************9999998669******************************555544.36********************************************************************99****************************************************************************************99**999999**************..****************************************************************************************************************************987788999****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.82
# Mc/sec: 1563.48
//
Query:       MMETSP0890-20130614|6122_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.47s 00:00:00.94 Elapsed: 00:00:00.65
# Mc/sec: 1050.71
//
Query:       MMETSP0890-20130614|6121_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.52s 00:00:01.17 Elapsed: 00:00:00.89
# Mc/sec: 1157.79
//
Query:       MMETSP0890-20130614|6129_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-21   75.1   0.1    9.8e-21   73.4   0.0    1.9  2  PF00179.21 Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.042   13.6   3.3       0.84    9.4   0.0    2.4  2  PF14408.1  Ribosomally synthesized peptide in actinomycetes
          1    7.8   8.3        1.3    7.5   5.8    1.1  1  PF05782.6  Extracellular matrix protein 1 (ECM1)
        3.4    5.8   8.1        4.4    5.4   5.6    1.1  1  PF09531.5  Nucleoporin protein Ndc1-Nup
        7.8    3.9  12.5        9.7    3.6   8.7    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   3.6e-24   9.8e-21       1     113 [.      10     121 ..      10     143 .. 0.88
   2 ?   -2.6   0.1         1   2.9e+03     113     136 ..     218     241 ..     214     244 .. 0.76

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 3.6e-24
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGS..TTT--TT--HHHHHHHHHHHHHS--T CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLk..eekWspaltlesvLlsiqsllaepnp 113
                 r++ +l+el+++++e++ka + ed ++++w+++++gp+gt + ggl++ +i +p e+PfkPP++ ++t   +   + + +icl++     e+W+pa+ ++++L ++++++ +p +
  MMETSP0890-20130614|6129_1  10 RIRADLMELQRNPSEMYKAFPLED-DVFQWHFTVRGPAGTEFVGGLYHGRILLPAEWPFKPPSIMLMT--PNGRFEVNKKICLSLTAhhPEHWQPAWGIRTILEALVAFFPTPAD 121
                 6888999****************8.*******************************************..5555667778999776533566******************88855 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1
                 TTS-SSHHHHHHHHHTHHHHHHHH CS
  PF00179.21 113 pesplnkeaakllkknreeykkkv 136
                   +p++k+  +llk+++ee +kkv
  MMETSP0890-20130614|6129_1 218 SPHPVQKNETNLLKNEEEEEEKKV 241
                 557888888888999888888887 PP

>> PF14408.1  Ribosomally synthesized peptide in actinomycetes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.6     0.014        39      33      59 .]     167     193 ..     148     193 .. 0.61
   2 ?    9.4   0.0   0.00031      0.84       4      23 ..     256     275 ..     253     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.014
   PF14408.1  33 sttsetstttspDgqnqqdsdsdtteD 59 
                 s ts+ts +  +D ++qq+++ +++ D
  MMETSP0890-20130614|6129_1 167 SDTSNTSKSKLGDDEQQQQQQPEQQHD 193
                 444555545445555556666666555 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00031
   PF14408.1   4 rrtalDPdtQtavyvDraGq 23 
                 ++t++DP+tQ a  +D+++q
  MMETSP0890-20130614|6129_1 256 QATRIDPSTQHAALIDTTTQ 275
                 5788************9875 PP

>> PF05782.6  Extracellular matrix protein 1 (ECM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.8   0.00047       1.3      60     144 ..     166     249 ..     118     266 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00047
   PF05782.6  60 pvdhprtsqhdlpfegqsevqpppsqediplqeedlltallpavdkvgpalpqeaiplqkelpplqvpieqkeekpapladqspp 144
                   d ++ts+ +l  ++q++ q p  q+di  ++ + +t     ++++  ++p    p+qk+  +l ++ e+ eek    + q p 
  MMETSP0890-20130614|6129_1 166 SSDTSNTSKSKLGDDEQQQQQQPEQQHDINQEQVN-ITRDSSLEQEATESIPSSPHPVQKNETNLLKNEEEEEEKKVEPMSQQPQ 249
                 46788999999998888888888887777644443.45566778999*************9998877777666665555554443 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.6    0.0016       4.4     361     449 ..     166     263 ..     151     308 .. 0.47

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0016
   PF09531.5 361 tvatkgraqskssgkeektssessskel...........srlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakd.kkassiitk 449
                 +++t+++++sk    e++++++++++ +           s+l+++ +e+  s++ p +k++ ++l++ ++++ +++  ++++p+ e    + ++a++i  +
  MMETSP0890-20130614|6129_1 166 SSDTSNTSKSKLGDDEQQQQQQPEQQHDinqeqvnitrdSSLEQEATESIPSSPHPVQKNETNLLKNEEEEEEKKVEPMSQQPQDE---LNlSQATRIDPS 263
                 33333333333333333333333333334444455655555666666666666666666666666553333333333333333322...111333333222 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.7    0.0036       9.7     626     727 ..     165     265 ..     130     289 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0036
   PF12722.2 626 nleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenlalrpksptglssk 727
                 n+++++++++++  + +++++++ ++++  +++++ it d++ ++e +++ ++s +++++++++ l+  ee++++k +++s ++ +++l+l++++ +  s++
  MMETSP0890-20130614|6129_1 165 NSSDTSNTSKSKLGDDEQQQQQQPEQQHDINQEQVNITRDSSLEQEATESIPSSPHPVQKNETNLLKNEEEEEEKKVEPMS-QQPQDELNLSQATRIDPSTQ 265
                 333333333333333222222222222223455555555555555555555555555555444444444444444444444.44444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1386  (0.101375); expected 273.4 (0.02)
Passed bias filter:                      633  (0.046299); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.50s 00:00:01.21 Elapsed: 00:00:00.80
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|6131_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   85.7   0.0    3.4e-24   84.3   0.0    1.7  1  PF06968.8  Biotin and Thiamin Synthesis associated domain
    2.3e-08   34.2   0.0    4.2e-08   33.4   0.0    1.4  1  PF04055.16 Radical SAM superfamily
  ------ inclusion threshold ------
      0.093   11.2   0.2       0.29    9.6   0.0    1.8  2  PF03320.8  Bacterial fructose-1,6-bisphosphatase, glpX-encoded


Domain annotation for each model (and alignments):
>> PF06968.8  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   7.4e-28   3.4e-24       1      90 [.     121     211 ..     121     213 .. 0.98

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 7.4e-28
   PF06968.8   1 pinfLrpiegtpl.dkkpvsdeellkliaaaRlllPkagirlstgreaelrdlqaltfmsganstfvGgyltttdnrsvdedikmlkklgl 90 
                 p+n L+p+egtp+ +++ vs  e++++iaaaR+llP +++rls+gr + ++++qal+f++gans+f G++l+tt n++ ded  ++ +lg+
  MMETSP0890-20130614|6131_1 121 PVNALVPVEGTPMaNNQAVSAFEVIRMIAAARILLPTTMVRLSAGRLSFSESEQALMFLAGANSIFDGDKLLTTPNPDRDEDSHLFDTLGI 211
                 89************************************************************************************99997 PP

>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   9.3e-12   4.2e-08      60     162 ..       8     105 ..       5     108 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 9.3e-12
                 TTHHHHHHHHHHCHEECCEEEEEE-SSCH.HHHHHHHHHTT-SEEEEEEESSSHHHHHHCCTCTS-HHHHHHHHHHHHHHSSETEEEEEEEECTTTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF04055.16  60 pdfvellerlaklalpgirialetngtlpdeeileelaelgvdrvslglesgdeekvlklmrrghtfeevlealeklreagikrvvdfivglpgetdeeleel 162
                 + f+++l++ +++   +  + + +  ++++ e++++l+e+g++ ++++l++  +  +  ++    +++++le++ ++r+agi  v+++ +++ ge +++++ +
  MMETSP0890-20130614|6131_1   8 KAFNDILDMVQQI--SNEGLEVCATLGMLNQEQAKKLKEAGLTAYNHNLDTSRDF-YPSVV-TSRSYDDRLETIANVRAAGIS-VCSGGILGLGEEHQDRASM 105
                 6688888999999..677777777777777*************************.*****.88*******************.6666666667777776655 PP

>> PF03320.8  Bacterial fructose-1,6-bisphosphatase, glpX-encoded
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.11   5.1e+02     226     256 ..      26      56 ..      19      60 .. 0.82
   2 ?    9.6   0.0   6.3e-05      0.29      50     112 ..      91     154 ..      74     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.11
   PF03320.8 226 emqgrLlleeeeererakkmGiedldkvykl 256
                 e+ + L + ++e+ +++k++G++ +++ +++
  MMETSP0890-20130614|6131_1  26 EVCATLGMLNQEQAKKLKEAGLTAYNHNLDT 56 
                 56677888899999********999988765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 6.3e-05
   PF03320.8  50 gtvviGegerdeapmLyiGekvGtgkgpevdi.avdpleGttlvAkgkpnaiavlavaekgsll 112
                 g + +Ge+++d+a mL++  ++  g+ +++ + a+ p+eGt ++ +++  a  v+ +     +l
  MMETSP0890-20130614|6131_1  91 GILGLGEEHQDRASMLHTYATLPGGHPESLPVnALVPVEGTPMANNQAVSAFEVIRMIAAARIL 154
                 56669****************988877777765899***********99999999876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 879.97
//
Query:       MMETSP0890-20130614|6137_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-12   47.2   0.0    1.3e-11   44.1   0.0    1.9  1  PF01789.11 PsbP
  ------ inclusion threshold ------
      0.094   12.7   0.0       0.15   12.1   0.0    1.3  1  PF12033.3  Protein of unknown function (DUF3519)


Domain annotation for each model (and alignments):
>> PF01789.11  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.8e-15   1.3e-11      21     175 ..      79     255 ..      62     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.8e-15
                 .---EEEE-S----EEEE----...................EEE--TTEEEEEE-.SS-TTSEEEEEEE--SS---STT.---.TTT---HHHHHTTS-TT---EEEEEEEEEEEETTEEEEEEEEEEE---.--EEEEEEEEEE..----EEEEEEEEEGGGHHHHHHHHHHHHHT-B- CS
  PF01789.11  21 aaglqayvdtkdgYeflyPsgW...................tevevdGqdvvfrD.liesdenvsvvvssvdkkksled.lGs.peevgerllkkvlaeegstreaelleasereadgktYYdlevlvklad.egdrhelatvtv..ergkLYtlklqtnekrwekvkkllervvdSFsv 175
                  +++++y+d ++  e lyPs+W                   ++++ + +   f   +  + en+s+  s++ + +s++  lG  p  +++rll+ ++a++ s+++a+ll as+r+++    +++e+  +l++  ++ h++a++ v     +L+t+++  +e++w++ +  ++ v++SF++
  MMETSP0890-20130614|6137_1  79 VQNFKRYIDDENHLECLYPSSWlgdtsvylkrnaqgaeallQKRAGPTPLAAFSSpNTRKLENLSIFRSDIPEVDSISSvLGDdPIVAAQRLLDSAIAPPSSGKSASLLTASQRVDGA---FTFEYMLTLPSgGNTFHNIAVIIVppRMSQLFTFTILCPEDSWSQREAIFRLVAESFRL 255
                 578**********************999999999888888767777777777765267889*************999874785377799*************************9887...5679999999977789*****99954578****************************97 PP

>> PF12033.3  Protein of unknown function (DUF3519)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.2e-05      0.15      26      55 ..      64      93 ..      60     118 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.2e-05
   PF12033.3 26 lkdkkkgeklknhyvitsfedyrdnsesle 55
                l d+  ++kl ++y++++f+ y d++ +le
  MMETSP0890-20130614|6137_1 64 LADFARNNKLDTYYSVQNFKRYIDDENHLE 93
                678999*******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 751.05
//
Query:       MMETSP0890-20130614|6136_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   14.2   0.0       0.06   13.2   0.0    1.4  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.4e-06      0.06     118     150 ..     244     276 ..     218     299 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.4e-06
                 EE----EE-EEEESS-B-S----EEEE------ CS
   PF05721.8 118 tdpeesvvgvwialedateenGclrfiPGSHkw 150
                 +d   sv+ +w  l +  +  G+lrf+PGSH  
  MMETSP0890-20130614|6136_1 244 VDSFASVIKLWRFLPPLDQRHGPLRFVPGSHIH 276
                 444678999**********************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.99
# Mc/sec: 1023.90
//
Query:       MMETSP0890-20130614|6135_1  [L=851]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   16.5   0.1      0.017   15.0   0.1    1.8  1  PF13574.1 Metallo-peptidase family M12B Reprolysin-like
       0.01   16.2   0.1      0.049   14.0   0.1    2.2  1  PF13582.1 Metallo-peptidase family M12B Reprolysin-like
  ------ inclusion threshold ------
      0.023   14.0   0.0      0.045   13.1   0.0    1.5  1  PF13583.1 Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.8e-06     0.017     111     149 ..     389     438 ..     353     449 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.8e-06
   PF13574.1 111 feidv.vaHElGHqfGanHdfts.gceessat.........epgsgstIM 149
                 f+ d  + HElGH++Ga+H     g+ ++++          e g++ + M
  MMETSP0890-20130614|6135_1 389 FDYDAsMIHELGHNLGAEHASLMsGGAKGAKAyidsldtwsEYGNAHSTM 438
                 45555789***********9874243333322244444455555555555 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.1e-05     0.049     109     123 ..     393     407 ..     368     408 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   PF13582.1 109 dtvaHEiGHqfGanH 123
                   ++HE+GH++Ga H
  MMETSP0890-20130614|6135_1 393 ASMIHELGHNLGAEH 407
                 5799*********** PP

>> PF13583.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.8e-06     0.045     137     161 ..     390     415 ..     287     446 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.8e-06
   PF13583.1 137 eydi.vaHEiGHlfGaaHdltssgep 161
                 +yd  + HE+GH++Ga+H +  sg  
  MMETSP0890-20130614|6135_1 390 DYDAsMIHELGHNLGAEHASLMSGGA 415
                 6777799***********98865544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.23u 0.40s 00:00:01.63 Elapsed: 00:00:00.91
# Mc/sec: 2240.99
//
Query:       MMETSP0890-20130614|6142_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-53  180.0   1.5    6.1e-53  179.7   1.0    1.0  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   1.0   4.4e-57   6.1e-53      32     268 ..      13     256 ..       2     258 .. 0.88

  Alignments for each domain:
  == domain 1    score: 179.7 bits;  conditional E-value: 4.4e-57
                 EEEH..-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHCHHHHC--.......B...---.EEEEEEEEE--HHHH------EEEEEEEETTEEEEEEEEETTTTEEEE-------EEE-.....EEEE----S-GGG-CCBEE--SSSSSCHHHCCCHHHHCCHHCCH.EEEBE-SHHHHHHHHH----SEEEEEEEEBHHHH----HHHHH---EEEECSS-S.CSS-EEEEEEC.HHHHHHHHHHHHT CS
  PF00459.20  32 ekeksgeedlvtaadkaveelilealaakfpgdkilgeetlaage.......kselgesgltwvvDPiDGTknFirgipqfavsiglleegkpvlGviaaPllnqlysaakgkGaflng.....qklkvsrapptseallatlfavssvkdtseaellekvlsavssp.gvrrvgssalklalvAeGkadayiefgrekkWDhaAGvaiveeaGGvvtdlkgegltllkkgviaasqkelaellaaavee 268
                 ++ k++++dl+t++d a++ +i ++l + +++  +lgee++ +g+       k  l++sg +wvvDPiDGT+nF+  ip  ++si+ +++g+ ++Gv+++P+ ++l+sa+k +Ga+l +     +++ vs a+++++a++ +  +   +  ++    l+++++  +++  +r +gs+al la+vA+G+  ay+e++ + +WD+aAG++++ eaGG+vtd++g+ +  ++++ i+a+++ ++++l++++e+
  MMETSP0890-20130614|6142_1  13 AT-KANSKDLLTETDLACQHVIYDVLGK-VKDTRFLGEEDVPSGAaaataaaKNALTQSGICWVVDPIDGTANFVDSIPLSTISIAAVDQGETLIGVVYDPFRDELFSAVKDQGATLINsssekKRIVVSAAKTLEDAIVYAGAPPTLKALQPS---LRGYNAVAPKArTMRLLGSAALMLAYVAAGRGAAYFEAD-LAAWDTAAGSLLIAEAGGKVTDADGQLYRPASTRQIVATNGHIHDQLLSTLEA 256
                 22.689*******************965.58**************99****99999***********************************************************996668987778899999999999988777666666666...888888777777789************************.**************************666666666666669999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 1084.45
//
Query:       MMETSP0890-20130614|6145_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 691.91
//
Query:       MMETSP0890-20130614|6148_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.7    6.4   7.9         12    5.6   5.5    1.5  1  PF14079.1 Domain of unknown function (DUF4260)


Domain annotation for each model (and alignments):
>> PF14079.1  Domain of unknown function (DUF4260)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.5   0.00089        12       9      87 ..      42     118 ..      32     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00089
   PF14079.1   9 glvvlaaalvlyallglswllflllllvpDlsmlgYlagpriGalvYNlaHtyilpllllalgvllkselllaialiWl 87 
                 +++v +++lv+ + l +s++l++l +lvp +++++  +   + al+  ++ ++++p+ l++l++l++ +l++ +al+ l
  MMETSP0890-20130614|6148_1  42 AATVTLTTLVAPISLTTSVTLVTLTILVPPVTLVALTTSVNLVALT--TLVSLTAPVTLVTLTALVTLTLTAPVALVAL 118
                 57888999999999*********************99888877765..6778999999999999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       823  (0.060196); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.85
# Mc/sec: 436.98
//
Query:       MMETSP0890-20130614|6144_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.3   0.4       0.13   11.6   0.3    1.3  1  PF11931.3 Domain of unknown function (DUF3449)
       0.42   10.1   3.6        1.7    8.2   0.2    2.7  2  PF07918.6 CAP160 repeat


Domain annotation for each model (and alignments):
>> PF11931.3  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.9e-05      0.13      26      92 ..      65     131 ..       5     134 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
   PF11931.3  26 erkqalteeerekeeelekeassksesseeeseeeseeeseeeeekkiynplnlpLgadgkPiPyWL 92 
                   k + + +e+ +++e ++++ ++++++  +++  +  + e+ ++++ y++++lp   dg P P+WL
  MMETSP0890-20130614|6144_1  65 PIKRDEKIDETAQNSEESRRIGERKKHHLLTTKYPRMMDPERMDDDEYYKDTELPAMIDGVPGPRWL 131
                 333333333333334444444444444444444445788888999999******************9 PP

>> PF07918.6  CAP160 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.023   1.6e+02       7      12 ..     140     145 ..     136     146 .. 0.83
   2 ?    8.2   0.2   0.00025       1.7       8      22 ..     245     259 ..     244     259 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.023
   PF07918.6   7 vvaDKA 12 
                 v+aDKA
  MMETSP0890-20130614|6144_1 140 VIADKA 145
                 9****9 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00025
   PF07918.6   8 vaDKAvsAKnvVASK 22 
                 v+DKA++A+  V +K
  MMETSP0890-20130614|6144_1 245 VIDKAALATQFVKTK 259
                 89*******999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.65
# Mc/sec: 1146.56
//
Query:       MMETSP0890-20130614|6146_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-30  104.0   0.3    4.7e-30  103.2   0.2    1.4  1  PF10609.4  ParA/MinD ATPase like
    4.5e-19   68.5   0.0    7.1e-19   67.8   0.0    1.3  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    9.1e-09   34.6   2.8    5.4e-07   28.8   0.3    2.7  2  PF02374.10 Anion-transporting ATPase
    5.4e-08   32.1   0.0    1.9e-07   30.3   0.0    1.7  1  PF09140.6  ATPase MipZ
    1.2e-07   31.6   0.0    2.1e-06   27.6   0.0    2.2  2  PF13614.1  AAA domain
    0.00023   20.5   0.5    0.00044   19.5   0.1    1.6  2  PF13481.1  AAA domain
      0.002   16.8   0.1      0.003   16.2   0.0    1.2  1  PF03308.11 ArgK protein
     0.0022   17.5   0.4        1.4    8.3   0.0    2.7  3  PF13500.1  AAA domain
     0.0049   16.4   0.0     0.0079   15.7   0.0    1.3  1  PF01583.15 Adenylylsulphate kinase
     0.0064   16.0   0.6        0.3   10.7   0.1    2.5  2  PF13245.1  Part of AAA domain
       0.01   14.9   0.0      0.021   13.8   0.0    1.5  1  PF00142.13 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.025   13.6   0.0    1.5  1  PF03193.11 Protein of unknown function, DUF258
      0.016   14.5   0.0       0.03   13.6   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
      0.026   13.3   0.2       0.69    8.7   0.0    2.5  3  PF10236.4  Mitochondrial ribosomal death-associated protein 3
      0.028   13.6   0.1      0.039   13.1   0.1    1.4  1  PF06564.7  YhjQ protein
      0.052   12.6   0.2       0.09   11.9   0.1    1.3  1  PF12846.2  AAA-like domain
      0.091   11.8   0.0       0.15   11.0   0.0    1.2  1  PF08433.5  Chromatin associated protein KTI12
        0.1   11.3   0.0       0.17   10.5   0.0    1.3  1  PF00931.17 NB-ARC domain
        0.1   12.0   0.2       0.19   11.2   0.1    1.4  1  PF05729.7  NACHT domain
       0.15   12.7   0.1       0.29   11.8   0.1    1.5  1  PF13207.1  AAA domain
       0.15   11.4   0.1       0.41   10.0   0.0    1.7  1  PF13555.1  P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PF10609.4  ParA/MinD ATPase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.2   7.1e-33   4.7e-30       1      70 [.     171     243 ..     171     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: 103.2 bits;  conditional E-value: 7.1e-33
                 -S-EEEE-------HHHHHHHHH-...----EEEE-CCC--HHHHHHHHHHHHCTT------EECT-EEE-S- CS
   PF10609.4   1 lDyLliDlPPGtgDehlslvqklp...ldgavivttpqevaladvrkeiklfkkleipilGvveNmsyfvcpk 70 
                 lD+L+iD+PPGt+Deh+sl+q+l+   ++g+++vttpqe+a++dvrke+++++k+++pilGv+eNm+++v p 
  MMETSP0890-20130614|6146_1 171 LDFLVIDTPPGTSDEHISLAQYLKlaqVSGCLVVTTPQEIAMQDVRKELNFCQKTSLPILGVIENMANIVTPL 243
                 8**********************766689***************************************99885 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   1.1e-21   7.1e-19       2     159 ..      63     238 ..      62     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 1.1e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01656.18   2 aiasgkGGvGKTtlaanLaralakrglrVlliDlDpqannssllgkvseilkkgeekasal......................lenfeagllaegeeg.......lvesllkkalealikeayDvviiDtapglgel...vanalqaadl..lvvviepekfsvegakrilellerlgkklkilgvvlnkvd 159
                  + sgkGGvGK+t+++ La+ala rg+ V l+D+D  ++    +++     k ++ + s                        l + +         +       +++ l+k+ l++++  + D+++iDt+pg ++    +a  l++a++   +vv++p+ ++++++++ l+ +++    l ilgv+ n+ +
  MMETSP0890-20130614|6146_1  63 LVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVDLCGPSVPRMLGL----KGRGVHRS-SsgwspvylesmpdlgvmsvgfmLPEDD---------KaviwrgpRKNGLIKQFLTEVDWGDLDFLVIDTPPGTSDEhisLAQYLKLAQVsgCLVVTTPQEIAMQDVRKELNFCQKTS--LPILGVIENMAN 238
                 689********************************999877666634....22222222.1367778876666655544444321222.........1223344788999*******99999***************99977777777764479*****************9999766..899******974 PP

>> PF02374.10  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.3   8.3e-10   5.4e-07       2      38 ..      61      97 ..      60     100 .. 0.90
   2 ?    4.7   0.1     0.019        12     197     289 ..     188     281 ..     156     285 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 8.3e-10
                CEEEE--------HHHHHHHHHHHHHTTS-EEEEE-- CS
  PF02374.10  2 kviffgGKGGVGKttvsaatavklseqgkkvllvstD 38
                k+++++GKGGVGK+t+s+ +a  l+  g+ v l+  D
  MMETSP0890-20130614|6146_1 61 KLLVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVD 97
                7899************************999777665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.019
                 HHHHHHT-TTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E-GCC-STSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--SS- CS
  PF02374.10 197 kveeilsdpertsfvlVvipeklslkEteRaikeLakygikvdavivNk.vlpeeeqeckflearkeiqkkylkeieekfedlpvvklplleee 289
                 ++ + l+  + +   +V++p++++++++++ ++  +k ++ +  vi N   +    ++c+++++r + q    k +  ++++  +++ p+++++
  MMETSP0890-20130614|6146_1 188 SLAQYLKLAQVSGCLVVTTPQEIAMQDVRKELNFCQKTSLPILGVIENMaNIVTPLSKCTVIDSRDHSQLDLSKYLPPDLQQSLIIQHPIFPHD 281
                 4666677777778889999999999999999999999999999999998767777777999999999999999999999999888888888765 PP

>> PF09140.6  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   2.9e-10   1.9e-07       4     113 ..      63     186 ..      60     199 .. 0.65

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.9e-10
   PF09140.6   4 vlgnekGGsGksttavhvavaLlkkgakvaaiDlDlrqrtltryle..nraataerkgle...lp.vpkl......lalkeevkeveeeesaevaeleeavaelea.eaDfiviDtP.Gsdsal 113
                 ++   kGG Gkst++  +a aL+++g+ v+ +D+Dl   ++ r l    r    +++g +   l+ +p+l      ++l+e+ k v      +   +++ ++e++  + Df+viDtP G+ ++ 
  MMETSP0890-20130614|6146_1  63 LVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVDLCGPSVPRMLGlkGRGVHRSSSGWSpvyLEsMPDLgvmsvgFMLPEDDKAVIWRGPRKNGLIKQFLTEVDWgDLDFLVIDTPpGTSDEH 186
                 45567**************************************986114444444444321113212322111112456775555544444444677888888874378999999973555544 PP

>> PF13614.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.3e-09   2.1e-06       4      53 ..      63     112 ..      62     132 .. 0.93
   2 ?    1.6   0.0      0.32   2.1e+02     108     154 ..     160     211 ..     156     214 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.3e-09
   PF13614.1   4 gvySpvggegkttlAlnlaqslaenrkkvLlldleeysgslalflgleek 53 
                  v+S +gg+gk+t++  la +la ++++v lld ++ ++s  ++lgl+++
  MMETSP0890-20130614|6146_1  63 LVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVDLCGPSVPRMLGLKGR 112
                 699*******************************************9877 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.32
   PF13614.1 108 eqLlerlke.rYdvvilDlgsllded....fallllklcdevllvvradvas 154
                 +q+l++    + d++++D++++++++    +++l l +++ +l+v+ ++ ++
  MMETSP0890-20130614|6146_1 160 KQFLTEVDWgDLDFLVIDTPPGTSDEhislAQYLKLAQVSGCLVVTTPQEIA 211
                 56666666677799******99887611114444566666666666666665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   6.8e-07   0.00044      31      59 ..      58      87 ..      33     108 .. 0.75
   2 ?   -2.9   0.0         5   3.3e+03     127     150 ..     156     178 ..     140     178 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.8e-07
   PF13481.1 31 prgsltllaGapgtGKStlalqlaaava.t 59
                +++ l++l G +g+GKSt+ +qla a+a +
  MMETSP0890-20130614|6146_1 58 VKHKLLVLSGKGGVGKSTISCQLAFALAaR 87
                4789***********************953 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5
   PF13481.1 127 tadlerllaaieelegpdlvviDt 150
                 ++ +++ l +++   ++d++viDt
  MMETSP0890-20130614|6146_1 156 NGLIKQFLTEVDW-GDLDFLVIDT 178
                 5566777777777.7899999997 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.6e-06     0.003      31      70 ..      62     101 ..      49     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.6e-06
                 EE--B-------HHHHHH---HHHH----EEEEEE----- CS
  PF03308.11  31 vvGltGvPGaGkstlveklikelrrrGkrvavlavDPssp 70 
                  + l G  G+Gkst+  +l+  l++rG+ v++l vD   p
  MMETSP0890-20130614|6146_1  62 LLVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVDLCGP 101
                 56789*******************************5544 PP

>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.8   1.8e+03       6      20 ..      15      29 ..      13      40 .. 0.87
   2 ?    6.0   0.1     0.011       7.1       2      33 ..      61      92 ..      60      94 .. 0.89
   3 !    8.3   0.0    0.0022       1.4     101     196 ..     172     308 ..     154     310 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.8
   PF13500.1  6 tgtdtgvGKTlvslg 20
                 ++++++GK ++++g
  MMETSP0890-20130614|6146_1 15 GPSSENAGKASTCAG 29
                58999********98 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.011
   PF13500.1  2 timvtgtdtgvGKTlvslgLvsalkrkgnkvg 33
                +++v +   gvGK+++s  L+ al ++g+ vg
  MMETSP0890-20130614|6146_1 61 KLLVLSGKGGVGKSTISCQLAFALAARGYAVG 92
                678889999***************99999887 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0022
   PF13500.1 101 divvvEGagglavpltseslnadiakslglpvlLVargglgtinhtllaiealrsrgvrilgviink..vnep.........e..................................nvealrkkspvpvlgavPedpdlr 196
                 d++v+++  g+++  +s     ++a+  g   l+V+++++ +++++   ++ +++  ++ilgvi n   +            +                                  + e++ ++ +++ lga+P dp+l 
  MMETSP0890-20130614|6146_1 172 DFLVIDTPPGTSDEHISLAQYLKLAQVSG--CLVVTTPQEIAMQDVRKELNFCQKTSLPILGVIENManI--VtplskctviDsrdhsqldlskylppdlqqsliiqhpifphdttwTPEQMAQTYNTTFLGALPLDPNLA 308
                 77777777777777777666666666665..566777777899*********************999442..2335555555155666777777788888888889999999999998888888889999*****999996 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05    0.0079       4      49 ..      62     107 ..      59     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.2e-05
                 EEEEE-ETT---HHHHHHHHHHHHCTS--EEEE---TTT----TT- CS
  PF01583.15   4 vvwltGlsgsGKstiavalekkLvekgikvylLdGdnvRhgLnkdL 49 
                  + l+G  g GKsti+++l+ +L ++g++v lLd d    ++ + L
  MMETSP0890-20130614|6146_1  62 LLVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVDLCGPSVPRML 107
                 5789******************************987665555555 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00045       0.3       8      37 ..      56      87 ..      49      97 .. 0.77
   2 ?    3.0   0.0      0.12        75      13      62 ..     174     219 ..     170     238 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00045
   PF13245.1  8 a..gnpllvvtGgPGtGKTttlaaiiaallaa 37
                +  +++llv+ G  G GK+t  ++++ al+a+
  MMETSP0890-20130614|6146_1 56 SnvKHKLLVLSGKGGVGKSTISCQLAFALAAR 87
                33569**************8888888777754 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.12
   PF13245.1  13 lvvtGgPGtGKTttlaaiiaallaarekp.grsvllv.aptgraakrlserl 62 
                 lv++ +PGt   +  +a    l+    ++ g  +l+v +p+  a + +++ l
  MMETSP0890-20130614|6146_1 174 LVIDTPPGTSDEHISLAQYLKLA----QVsG--CLVVtTPQEIAMQDVRKEL 219
                 78899999977766555555555....4445..8888777777777776665 PP

>> PF00142.13  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.3e-05     0.021       4      31 ..      64      91 ..      61     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.3e-05
  PF00142.13  4 aiYGkGGiGksttsqnlaaalaemgkkv 31
                 + GkGG+Gkst s+ la ala++g  v
  MMETSP0890-20130614|6146_1 64 VLSGKGGVGKSTISCQLAFALAARGYAV 91
                567*******************998766 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.9e-05     0.025      30      56 ..      55      81 ..      43      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.9e-05
                HHHCTTSBEEEE-------HHHHHHH- CS
  PF03193.11 30 aellkdktsvlvGqSGvGKSsLinall 56
                 +++k+k+ vl G+ GvGKS++  +l+
  MMETSP0890-20130614|6146_1 55 LSNVKHKLLVLSGKGGVGKSTISCQLA 81
                467899***************987775 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.6e-05      0.03      46      81 ..      59      94 ..      40      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.6e-05
  PF01695.12 46 qaenlvllGpsGvGKthlAialgveavraglsvlfv 81
                +++ lvl G  GvGK+ + + l+ + + +g++v  +
  MMETSP0890-20130614|6146_1 59 KHKLLVLSGKGGVGKSTISCQLAFALAARGYAVGLL 94
                47789**************************99765 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0011      0.69      18      45 ..      55      82 ..      43      91 .. 0.81
   2 ?   -0.8   0.0      0.79   5.2e+02      38      59 ..     187     208 ..     185     211 .. 0.92
   3 ?    1.1   0.0      0.22   1.4e+02     141     173 ..     211     245 ..     206     261 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0011
   PF10236.4 18 ekkkktkrvvltGekgsGKSvlLaqava 45
                  + k+k +vl+G+ g+GKS+  +q+ +
  MMETSP0890-20130614|6146_1 55 LSNVKHKLLVLSGKGGVGKSTISCQLAF 82
                66789999*************9999754 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.79
   PF10236.4  38 vlLaqavayAlekgwvVlhvpe 59 
                 ++Laq +  A+ +g +V++ p+
  MMETSP0890-20130614|6146_1 187 ISLAQYLKLAQVSGCLVVTTPQ 208
                 78*****************997 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.22
   PF10236.4 141 vfqallkELkaqsk.rvpvlvavDglnalfrt.se 173
                 ++q + kEL+  +k  +p+l ++ +++ ++++ s+
  MMETSP0890-20130614|6146_1 211 AMQDVRKELNFCQKtSLPILGVIENMANIVTPlSK 245
                 579999***9877778*************999865 PP

>> PF06564.7  YhjQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     6e-05     0.039       3      63 ..      62     126 ..      60     204 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6e-05
   PF06564.7   3 vlaLqGvrGGvGttsllaaLgwalqelgesv..LviDls.Pd..nlLrlsfnvdleqseGWarael 63 
                  l+L G +GGvG++++   L++al   g  v  L +Dl+ P+   +L+l+     + s+GW+   l
  MMETSP0890-20130614|6146_1  62 LLVLSG-KGGVGKSTISCQLAFALAARGYAVglLDVDLCgPSvpRMLGLKGRGVHRSSSGWSPVYL 126
                 577777.8********************99943446677343225788887777778888876555 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014      0.09       5      40 ..      64     102 ..      61     116 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
   PF12846.2   5 lilGppGsGKSvllkklvlqllargprvviiDp...gge 40 
                 +++G+ G GKS+    l+++l+arg+ v  +D+   g++
  MMETSP0890-20130614|6146_1  64 VLSGKGGVGKSTISCQLAFALAARGYAVGLLDVdlcGPS 102
                 789****************************98555555 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00024      0.15       3      40 ..      62      99 ..      61     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00024
   PF08433.5  3 LvvltGlPssGKstvakeLakaleeegrsvvvisdesl 40
                L+vl+G   +GKst++ +La al+++g++v +++ + +
  MMETSP0890-20130614|6146_1 62 LLVLSGKGGVGKSTISCQLAFALAARGYAVGLLDVDLC 99
                99****************************99987766 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00027      0.17       8      38 ..      51      79 ..      48      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00027
                HHHHHHTTTSSSEEEEEE-------HHHHHH CS
  PF00931.17  8 viekLleeeeelkvvglvGmgGvGKttlakq 38
                v+e+L++   + k++ l+G+gGvGK+t++ q
  MMETSP0890-20130614|6146_1 51 VAERLSN--VKHKLLVLSGKGGVGKSTISCQ 79
                5677777..66788999**********9865 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00029      0.19       2      29 ..      62      89 ..      61      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00029
   PF05729.7  2 tvilqGeaGsGKTtLlqklasawakgkl 29
                +++l G+ G+GK+t  ++la a+a++ +
  MMETSP0890-20130614|6146_1 62 LLVLSGKGGVGKSTISCQLAFALAARGY 89
                689********************98865 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00044      0.29       3      26 ..      64      90 ..      62     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00044
                --B--TT---HHHHHHHHHHS...TEE CS
   PF13207.1  3 aitGppGsGKsTlakeLaerl...glp 26
                +++G  G+GKsT++ +La +l   g+ 
  MMETSP0890-20130614|6146_1 64 VLSGKGGVGKSTISCQLAFALaarGYA 90
                688999***********9988555554 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00064      0.41      22      39 ..      59      76 ..      53      88 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00064
   PF13555.1 22 kgkntlltGasGsGKSTl 39
                k+k  +l+G+ G+GKST+
  MMETSP0890-20130614|6146_1 59 KHKLLVLSGKGGVGKSTI 76
                456689***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.48s 00:00:01.21 Elapsed: 00:00:01.06
# Mc/sec: 809.34
//
Query:       MMETSP0890-20130614|6150_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.87
# Mc/sec: 1495.66
//
Query:       MMETSP0890-20130614|6157_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.3   0.0    2.1e-06   27.1   0.0    1.0  1  PF00698.16 Acyl transferase domain
  ------ inclusion threshold ------
       0.14   11.6   0.3       0.21   11.0   0.2    1.2  1  PF09811.4  Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> PF00698.16  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.1e-10   2.1e-06     182     285 ..      25     128 ..      12     133 .] 0.87

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 3.1e-10
                 ---EEEEEEETTTEEEEE--HHHHHHHHHHHHHHHHTT--HHHHHHHH---HHHHHHHHHHHHHTS-TT-------EEE-----S--SSGGGG---TTHHHGG- CS
  PF00698.16 182 alveavdyavhspqveaiadalalelakiaprkpkvpkistvsldksdereldaeywernlrspVrfaeavlslaeqgylvfvevspHpvllaaveetlksedv 285
                 + + av  a+h+  ++++ +al+++l++    +p++p is v +++++ + +  +  +r + spV+ ++  ++++  g++ + e+ p  v++  +++  k+++v
  MMETSP0890-20130614|6157_1  25 TVRLAVAGAFHTDFMAPAVEALKSALKETNIITPRIPVISNVDAKPHSDPDVIKDLLARQVTSPVLWEDSAQAILSAGFEQGYELGPGKVVAGIIKRIDKQAQV 128
                 55778999********************999************************************9999999888888888888888777777777666555 PP

>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   3.1e-05      0.21       7      25 ..      92     110 ..      92     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.1e-05
   PF09811.4   7 eeGkeeglqeGfdeGfqeG 25 
                 e+  ++ l +Gf++G++ G
  MMETSP0890-20130614|6157_1  92 EDSAQAILSAGFEQGYELG 110
                 5788999*********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.34s 00:00:00.75 Elapsed: 00:00:00.77
# Mc/sec: 413.92
//
Query:       MMETSP0890-20130614|6154_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.5e-135  449.5   0.0   4.5e-135  449.2   0.0    1.1  1  PF00113.17 Enolase, C-terminal TIM barrel domain
    2.5e-57  192.3   0.7    4.3e-57  191.5   0.5    1.4  1  PF03952.11 Enolase, N-terminal domain
    1.2e-05   24.2   0.6    2.5e-05   23.2   0.4    1.5  1  PF07476.6  Methylaspartate ammonia-lyase C-terminus
     0.0083   15.9   0.0      0.018   14.8   0.0    1.6  1  PF13378.1  Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> PF00113.17  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.2   0.0  1.3e-138  4.5e-135       2     295 ..     185     480 ..     184     481 .. 0.97

  Alignments for each domain:
  == domain 1    score: 449.2 bits;  conditional E-value: 1.3e-138
  PF00113.17   2 vvlPvPalnvinGGshagnklalqefmilPtGassfkealrlGaevyhklksvikkkygksatnvGdeGGfaPnlqsnkealdlikeaiekaGykgkvkialdvassefykekdgkydldf...kneesdkskkltseeladlykelvkkyPivsiedpfdeddweawkklteelgdkiqivGddltvtnpkrlkkaiekkaanalllkvnqiGsvtesleavklakkagygvvvshrsGetedtfiadlavglkaGqiktGapcrserlakynqllrieeelgekakyaGkkfrkk 295
                 ++lPvPa+nvinGGshagn+la+qe+ ++P Ga+sf+ea+++G+evyh+lks+ikkk+g +at +GdeGGfaP  + ++++++l+++ai+ aGy+gk +i+ldva+sef  ++++ ydl     +++++d+s kl++++la++y++l++++Piv+ied+fdeddw+aw    ++lg  iq+vGddltvtnp+++++ai++ka+nalllkvnqiGsvtes++avklak++ +gv+ shrsGetedt+iad+avgl++GqiktGapcrserlakynqllrie +lg+ka+yaG++ rk+
  MMETSP0890-20130614|6154_1 185 FILPVPAFNVINGGSHAGNALAFQEYFVIPDGAESFSEAMQIGCEVYHTLKSIIKKKFGGDATLIGDEGGFAPPCD-ARSGVELVMQAISDAGYQGKCSIGLDVAASEFKVKDEDIYDLGKwypEDQKDDPSLKLSAAQLAQFYQDLCNDFPIVTIEDAFDEDDWSAWIDSCASLGTSIQLVGDDLTVTNPEKIQRAINEKACNALLLKVNQIGSVTESIDAVKLAKSDNWGVMTSHRSGETEDTYIADIAVGLCTGQIKTGAPCRSERLAKYNQLLRIESQLGDKASYAGSSWRKP 480
                 79***********************************************************************985.789***************************************753447788999****************************************************************************************************************************************************************998875 PP

>> PF03952.11  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5   0.5   1.3e-60   4.3e-57       2     132 .]      47     175 ..      46     175 .. 0.99

  Alignments for each domain:
  == domain 1    score: 191.5 bits;  conditional E-value: 1.3e-60
                 --EEE-EEEE-----EEEEEEEE----.-EEEE----------S--------TTTT-----HHHHHHHHHT---------TT-HHHHHHHHHHH---TT------TTT---HHHHHHHHHHH----HHHHH CS
  PF03952.11   2 IekikareildSrGnpTvevevtlesgalgraavPsgaStgekealelrdgdkkrylgkgvekavenvneeiapaligldvedqkeiDkllieldgtenksklGanailavSlAvakaaAaakklplyryl 132
                 I+ ++areildSrGnpTvevevt+e g ++ra+vPsgaStg++ea+elrdg+ +ry+gkgv++a++nv++e+ap +ig+++ +q++iD++++e+dgt+nk+k+Ganail+vSlAvaka+Aa+k++ply+++
  MMETSP0890-20130614|6154_1  47 IQAVEAREILDSRGNPTVEVEVTTELG-VFRASVPSGASTGAYEAVELRDGG-SRYMGKGVLQAIKNVQQELAPLVIGMNTIEQRAIDEAMLEADGTKNKAKFGANAILGVSLAVAKAGAASKNIPLYQHI 175
                 899************************.89**********************.****************************************************************************97 PP

>> PF07476.6  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4   7.4e-09   2.5e-05     134     217 ..     356     440 ..     320     446 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 7.4e-09
                 HH----EEEEE-TT--S.HHHHHHHHHTT--SEEE--GGG----HHHHHHHHHHHH---EEEE---TTS-HHHHHHHHHHHHHH- CS
   PF07476.6 134 kergvkvelvaDeWcnt.ledikefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatr 217
                 ++ g++++lv D+ + t  e i++ ++++a++++ +k+  +G+++++i+av  +k+ + g+++   + et+ +  + + v+l t+
  MMETSP0890-20130614|6154_1 356 ASLGTSIQLVGDDLTVTnPEKIQRAINEKACNALLLKVNQIGSVTESIDAVKLAKSDNWGVMTSHRSGETEDTYIADIAVGLCTG 440
                 4568999*****998662689*************************************************999888888888876 PP

>> PF13378.1  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.3e-06     0.018       4      53 ..     371     420 ..     368     462 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.3e-06
                 SSSHHHHHHHHHTT--SEEEEBTTTCH-HHHHHHHHHHHHHTT-EEEEBS CS
   PF13378.1   4 ltsrrdfrrlleagavdiiqpdlakvGGitealriaalaeayglpvaphs 53 
                 +t+++ ++r++ ++a+  + +++ ++G +te++ +++la++ ++ v+   
  MMETSP0890-20130614|6154_1 371 VTNPEKIQRAINEKACNALLLKVNQIGSVTESIDAVKLAKSDNWGVMTSH 420
                 78999***********99**************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.79
# Mc/sec: 1468.15
//
Query:       MMETSP0890-20130614|6158_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   98.5   0.1    1.8e-28   98.1   0.1    1.2  1  PF06093.8 Spt4/RpoE2 zinc finger
     0.0076   15.6   1.0      0.014   14.8   0.7    1.5  1  PF14445.1 Prokaryotic RING finger family 2


Domain annotation for each model (and alignments):
>> PF06093.8  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   2.6e-32   1.8e-28       1      76 [.      27     102 ..      27     103 .. 0.98

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 2.6e-32
   PF06093.8   1 lrACllCklvktedqFeeegCpnCellelkgdkekvsectseefeGlvaildpekSwvAkwqrldkkvpglYAlkv 76 
                 lrACl+C+lvk +dqF++ gC+nC +le+++ +++v+ect+++feG++a+++pe+Sw  kw+ l k+ pg+YA+++
  MMETSP0890-20130614|6158_1  27 LRACLRCGLVKCMDQFYTIGCENCPFLEMAERQDRVNECTTSDFEGVIALMKPEDSWLSKWEGLRKFYPGVYAVRL 102
                 69************************************************************************86 PP

>> PF14445.1  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.7     2e-06     0.014       6      35 ..      11      40 ..       6      54 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-06
   PF14445.1  6 argeCdlCrtsaelaelrqCvlCgrwqCaa 35
                 +ge d+C+   ++++lr C  Cg  +C +
  MMETSP0890-20130614|6158_1 11 GHGEVDFCEPPNGMTGLRACLRCGLVKCMD 40
                57899*********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 536.13
//
Query:       MMETSP0890-20130614|6170_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.6   0.3    0.00063   19.4   0.2    1.7  1  PF00855.12 PWWP domain


Domain annotation for each model (and alignments):
>> PF00855.12  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   4.6e-08   0.00063       2      29 ..      14      41 ..      13      70 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.6e-08
                -----EEEE-B---BSEEEEEE-GCCTS CS
  PF00855.12  2 fkigdlVlaKvkgfpwWPArvvsqketp 29
                ++ g +V+a v++ pwWP++v+  ++  
  MMETSP0890-20130614|6170_1 14 YRSGSVVWARVGRRPWWPCVVFGSWSET 41
                567899***************9887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.81
# Mc/sec: 890.50
//
Query:       MMETSP0890-20130614|6171_1  [L=1182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-47  160.4   2.2    3.3e-21   75.4   0.0    3.8  4  PF02181.18 Formin Homology 2 Domain
      1e-18   67.9   1.2    6.5e-12   45.8   0.5    4.6  4  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   7.2e-06     0.049       2      41 ..     386     428 ..     385     478 .. 0.67
   2 ?   -3.5   0.6      0.46   3.1e+03      61      90 ..     549     588 ..     502     592 .. 0.61
   3 !   69.8   0.0   2.4e-23   1.6e-19      41     192 ..     628     790 ..     617     798 .. 0.90
   4 !   75.4   0.0   4.9e-25   3.3e-21     194     367 ..     822    1008 ..     813    1012 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.2e-06
                 ------SS-B--------SSGGCSSSHHHHTTCHHHHC...TS CS
  PF02181.18   2 kkeekpkkklkplhWdkvnaaqdrgtvWdkleeesfek...dl 41 
                 k+ee+   kl+ l+W +++ a+  gt+W+k++++++     d 
  MMETSP0890-20130614|6171_1 386 KEEEEHYIKLRGLYWHRIKLAEIGGTIWEKINATKYDLmnhDS 428
                 567777789*************************765544322 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.46
                 -..........---HCCCCTTCCESSS-HHHHHHHHHHCH CS
  PF02181.18  61 k..........ekkkkkkkkkkkikvLdpkrsqnvaIllr 90 
                 +          + + ++++kk+++ v ++krs++++  lr
  MMETSP0890-20130614|6171_1 549 DenssvqqetsSSTISSSSKKESVAVHEQKRSTTLSAKLR 588
                 1333333334455677778888888888888877765555 PP

  == domain 3    score: 69.8 bits;  conditional E-value: 2.4e-23
                 SHHHHHHHHTBSC--HCCH--...---HCCCCTTCCESSS-HHHHHHHHHHCHHHTS.-HHHHHHHHHTTTTCCCT....HHHHHHHHHHCGGHHHHHHHHTTCCC...GTTB-HHHHHHHCCCTCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH CS
  PF02181.18  41 ldldeleelFsakakkksskk...ekkkkkkkkkkkikvLdpkrsqnvaIllrklkl.paeeivqaileldeevls....lellenLlkmlPtkeeleklkeykgd...eskLseaeqFllelvkiprleeRleallfksefeeeveelkrkletleaaseeL 192
                 +d++ le++F   + ++s+        kk  k + +i++Ldpkr+q v+I+l ++k+ +  ei +ai+++d+++l         e Ll ++Pt+ee+ k+++y +d   +skL++ae+F+  + +iprl+ Rl + l   +f+e+++++ ++ +++e a   L
  MMETSP0890-20130614|6171_1 628 VDMQALEDFFCDVTANNSNLHrlsGGGKKTPKIPSEIRILDPKRAQSVQITLGSIKVgSFGEIRDAIIAIDANKLPhlsnAAGTEVLLSICPTQEEYGKVRAYVDDgkdVSKLAPAERFFAIIGEIPRLTPRLTCVLELLRFDETLNHILEQADAVELAGLRL 790
                 58889999999888887776677666677788899********************762568***********99999999999*****************999998999*******************************************99999886655 PP

  == domain 4    score: 75.4 bits;  conditional E-value: 4.9e-25
                  H-HHHHHHHHHHHH---TTT-CCTT.G------GGGGGGCCCSB-STTTS.BHHHHHHHHHHTTSGGGGGHHHHTTT.HHHCCTS-HHHHHHHHHHHHHHHH.HHHHHHHCHHT...TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..........---TTCCHHHHHHHHHHHHH CS
  PF02181.18  194 eseklkklLeliLalGNymNggtrr.gqAkGFkLdsLlkLsdvKstdnkt.tLLhfvvkiveeklpevldlsselsn.vekaakvdleelekdvkklekglk.klekeleksee...keeesdkfvekleefleeaeeklkkleeelkeakelfkelteYf..........gedpkevspeeffkilreFl 367 
                  +s  l  +L +iLa+GN+mN+g++  g+A GF+L++L+kL ++K +d k  t+L fvv+    +l+  ++l  els+ +++a++v+++++e + ++lek ++ ++ +el+++     +   + +f+ +  +f + a ++l++ +    +a++l++++++++           e+++    ++ff +l+ Fl
  MMETSP0890-20130614|6171_1  822 SSAPLAAFLCVILAAGNRMNQGSKGrGDAAGFQLEILTKLTNIKCNDPKAgTFLTFVVDQ--IGLDRTSKLIGELSSpIQRASRVNYDSVEREFDQLEKIIEtRVFRELQHGTGtleDDTYRRPFLNFCGKFASHATRRLESARIVVARARSLVERVARFLkvdlydtsafAENCD--GVQQFFGTLKLFL 1008
                  6778999****************988********************876549******98..4899999999888644***********************8468999*9999999899999***************************************888766654333333..5778888888887 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.5   9.5e-16   6.5e-12      57     147 ..     183     294 ..     147     295 .. 0.61
   2 !   29.8   0.0   8.1e-11   5.5e-07      99     147 ..     303     351 ..     296     352 .. 0.89
   3 ?   -5.4   4.6         2   1.4e+04      45      45 ..     500     500 ..     427     597 .. 0.57
   4 ?   -1.0   0.3      0.25   1.7e+03      79      92 ..    1043    1056 ..     989    1102 .. 0.52

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 9.5e-16
   PF10152.4  57 d....................elpappaaarrsggpppppgara.eaaaqeaeaaraetpaeqepealaegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpelld 147
                 d                    + +a++++  r+ + +++  a + +a++  +++++ +   e++ +++ ++ +t  +dpr++kY kml++ Vp  av  Km++eGldp lld
  MMETSP0890-20130614|6171_1 183 DqdieklkrqaagvesgivnkNGDAVSQNVLRNTQDANSSVAGVlAASSLLVQKNEDTSGDEEKKKEQIQAAVTKDEDPRLKKYRKMLAMHVPRGAVEIKMRSEGLDPALLD 294
                 2334444444445555555444444444444444333333333313444455555555555556677788899999***********************************9 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 8.1e-11
   PF10152.4  99 epealaegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpelld 147
                 e + ++ + ++v+kd r+ k+ kml++ +p +a+  Km+aeGl+p +ld
  MMETSP0890-20130614|6171_1 303 EQNDVKSDIVEVSKDARFIKFWKMLSFHIPRAAIDVKMRAEGLNPAILD 351
                 445678899**************************************99 PP

  == domain 3    score: -5.4 bits;  conditional E-value: 2
   PF10152.4  45 a 45 
                 +
  MMETSP0890-20130614|6171_1 500 S 500
                 0 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.25
   PF10152.4   79 raeaaaqeaeaara 92  
                  ra+a++ + +a+ +
  MMETSP0890-20130614|6171_1 1043 RAAAEERKRKAEIE 1056
                  11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1229  (0.0898917); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.77u 0.31s 00:00:02.08 Elapsed: 00:00:01.76
# Mc/sec: 1609.37
//
Query:       MMETSP0890-20130614|6165_1  [L=1248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-27   94.8   0.6    6.4e-27   94.1   0.4    1.3  1  PF00149.23 Calcineurin-like phosphoesterase
    1.2e-09   36.6   0.4     0.0002   20.3   0.0    2.7  2  PF00036.27 EF hand
    1.9e-09   37.4   0.1    5.7e-09   35.8   0.1    1.9  1  PF13499.1  EF-hand domain pair
    7.9e-08   31.1   0.3      0.001   18.1   0.1    2.8  2  PF13202.1  EF hand
    1.3e-07   30.9   0.2      0.017   14.5   0.0    3.1  3  PF13833.1  EF-hand domain pair
      1e-06   27.9   0.2     0.0032   17.1   0.0    3.0  2  PF13405.1  EF-hand domain
  ------ inclusion threshold ------
      0.042   13.5  12.8      0.099   12.3   8.9    1.7  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.4   3.3e-30   6.4e-27       2     200 ..     264     543 ..     263     544 .. 0.95

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 3.3e-30
                 EEEEEEEBTBBHHHHH....................H...HHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEES....EEEEEESSSSCHHHCTTTTH............................................................................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
  PF00149.23   2 rilvigDlHgglddle....................g...lllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvd....gkilltHgplsssggssddi..........................................................................................gggelfgpdalekllekygvdlvlrGHeHv 200
                 + l++gDlHg+++dl                         l    ++ ++++    +lflGD+vdrg ++ e++ +l  l+lkl++p++++l+rGNHEs++++  +gf+ e+                                    ++ + ++ e++++f+alpl+a+v     g++l++Hg+++++  +  di                                                                                          g+++ f+ +a++k+l ++++ +++r+He +
  MMETSP0890-20130614|6165_1 264 PLLCVGDLHGQYEDLLtvlhgdgrddtlrlaracvhApryLNTTNNNDNEKSSRGSILFLGDYVDRGARGCEVFLYL--LALKLRYPHHIHLIRGNHESRSLTGHFGFRVECR----------------------------------RKYSMTAYHEICRVFEALPLAAKVTganyGDVLCCHGGIGPHFSTIQDIqnidrfteppddgplcdilwadparhsnprraamarrslhqkpinqcssgneslgddesdfdqgeydsdqglsddedeedfqdfetnvarGCSVVFSQRATRKFLSNNNLVAIVRAHEVQ 543
                 6899*******************9999998887665167999999999999999***********************..*********************************8..................................7999999999999999999999987344469*************99999*********************************************************************************************************************975 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     1e-07    0.0002       2      25 ..    1161    1184 ..    1160    1188 .. 0.89
   2 !   14.1   0.0     1e-05     0.019       6      27 ..    1201    1222 ..    1196    1224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1e-07
                  HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27    2 lkeaFkefDkDgdGkIsfeEfkea 25  
                  l+ +F++fD D++G I+ eE+ ++
  MMETSP0890-20130614|6165_1 1161 LRLIFSLFDIDNSGSIDREELAKY 1184
                  6789*****************876 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1e-05
                  HHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27    6 FkefDkDgdGkIsfeEfkealk 27  
                   + +D DgdG Is+++++++ +
  MMETSP0890-20130614|6165_1 1201 LQAIDIDGDGCISLDDWVSFAA 1222
                  6789*************98865 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.9e-12   5.7e-09       2      65 ..    1161    1220 ..    1159    1221 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.9e-12
   PF13499.1    2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65  
                  l+ +F+l+D d++g++d+eeL +++        +  +++ +d +++ +D +gdG++s+++ +++
  MMETSP0890-20130614|6165_1 1161 LRLIFSLFDIDNSGSIDREELAKYAEEVD----ECVSPRDVDCCLQAIDIDGDGCISLDDWVSF 1220
                  5669*************************....77777777777****************8775 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   5.3e-07     0.001       4      23 ..    1164    1183 ..    1161    1185 .. 0.89
   2 !   10.2   0.0   0.00017      0.34       5      23 ..    1201    1219 ..    1197    1221 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.3e-07
                  HHHHH--S----B-HHHHHH CS
   PF13202.1    4 tFrafDlNgDGkIsreELkr 23  
                  +F+ fD +++G I+reEL +
  MMETSP0890-20130614|6165_1 1164 IFSLFDIDNSGSIDREELAK 1183
                  6*****************65 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00017
                  HHHH--S----B-HHHHHH CS
   PF13202.1    5 FrafDlNgDGkIsreELkr 23  
                  ++a+D +gDG Is +++  
  MMETSP0890-20130614|6165_1 1201 LQAIDIDGDGCISLDDWVS 1219
                  79************99965 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6     5e+03       6      33 ..     210     232 ..     207     233 .. 0.71
   2 !   14.5   0.0   8.8e-06     0.017      26      51 ..    1160    1185 ..    1143    1187 .. 0.79
   3 !   12.9   0.1   2.8e-05     0.055      22      52 ..    1192    1222 ..    1185    1224 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.6
   PF13833.1   6 treeLkralallglkglseeevdilfre 33 
                    +L++     +   +s+e v+++f+ 
  MMETSP0890-20130614|6165_1 210 NTISLSS-----KAALPSPENVRAVFDQ 232
                 5555555.....55669*******9985 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 8.8e-06
   PF13833.1   26 evdilfrefDtdgdGkisfeEFcvll 51  
                   ++ +f++fD+d++G i+ eE  ++ 
  MMETSP0890-20130614|6165_1 1160 ALRLIFSLFDIDNSGSIDREELAKYA 1185
                  34668****************98876 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 2.8e-05
   PF13833.1   22 lseeevdilfrefDtdgdGkisfeEFcvlle 52  
                  +s+ +vd+ + ++D+dgdG is+++++++ +
  MMETSP0890-20130614|6165_1 1192 VSPRDVDCCLQAIDIDGDGCISLDDWVSFAA 1222
                  6788999999*****************9865 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-06    0.0032       2      24 ..    1161    1183 ..    1160    1188 .. 0.89
   2 !    7.7   0.0    0.0017       3.4       7      25 ..    1202    1220 ..    1196    1229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.6e-06
                  HH---GCC-------B---HHHH CS
   PF13405.1    2 lreaFklfDkdgdGkidaeELrd 24  
                  lr +F lfD d++G id+eEL +
  MMETSP0890-20130614|6165_1 1161 LRLIFSLFDIDNSGSIDREELAK 1183
                  6779*****************87 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0017
                  GCC-------B---HHHHH CS
   PF13405.1    7 klfDkdgdGkidaeELrda 25  
                  +++D dgdG+i++++ +++
  MMETSP0890-20130614|6165_1 1202 QAIDIDGDGCISLDDWVSF 1220
                  689***********98875 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   8.9   5.1e-05     0.099       3      44 ..      10      56 ..       8      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.1e-05
   PF13923.1  3 fsCpiCleelen.....pviltpCgHlyCkkCieqwlekskkkCPiC 44
                ++Cp+C++++e      p +l +Cg l+C  C+ +++   +  CP C
  MMETSP0890-20130614|6165_1 10 KECPLCYDQFELvgiraPRVLPCCGALTCVGCLADMICDDEVCCPEC 56
                68********99999999999***********88865555999**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       724  (0.0529549); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.74u 0.44s 00:00:02.18 Elapsed: 00:00:01.76
# Mc/sec: 1699.23
//
Query:       MMETSP0890-20130614|6167_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-15   54.4   0.3    3.2e-08   33.6   0.0    2.6  2  PF00505.14 HMG (high mobility group) box
    1.1e-11   44.9   0.1    1.4e-06   28.5   0.0    2.7  3  PF09011.5  Domain of unknown function (DUF1898)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.7e-12   3.2e-08       6      69 .]     170     239 ..     165     239 .. 0.93
   2 !   18.4   0.0   2.5e-07    0.0017       2      62 ..     279     337 .]     278     337 .] 0.97

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 4.7e-12
                 -HHHHHHHHHHHHHHHHSTTS-......HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   6 saFflfskeqraklkaenPdlk......vaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 saF+ f+k +r  l  +nP+l       ++ ++++ g++Wk l  +e++ Y+ +a ++k +y ke+++Y+
  MMETSP0890-20130614|6167_1 170 SAFNYFAKSFRNGLGDQNPGLDirspeqNNRLNRITGRRWKLLLSSEREYYDIAAVRDKIRYLKEMKAYQ 239
                 9*******************96555556899*************************************95 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.5e-07
                 --S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHH CS
  PF00505.14   2 kRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeye 62 
                 +Rp s + +f+++    +  ++ +l++   s+  g +Wk+++++e + Ye  a+k  ++++
  MMETSP0890-20130614|6167_1 279 PRPISEYTVFVQQEIMDIGVKCANLSNH--SRYFGMRWKSMTQDEHRLYEYLADKMNKRHM 337
                 7************************999..8****************************97 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   9.3e+03      36      49 ..     123     136 ..     118     138 .. 0.76
   2 !   28.5   0.0     2e-10   1.4e-06       1      70 []     162     235 ..     162     235 .. 0.89
   3 !   13.4   0.0     1e-05     0.069       8      64 ..     282     334 ..     277     336 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.4
   PF09011.5  36 vsklcsekWkalse 49 
                    + s  W ++++
  MMETSP0890-20130614|6167_1 123 YFDETSGFWNNMTK 136
                 55677888999986 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 2e-10
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevskl....csekWkalseeeKekYeekAkedkkrydrea 70 
                 p+kp++  +A+++F++  r+ l  ++p   ++  e         + +Wk l ++e+e Y+  A  dk ry +e+
  MMETSP0890-20130614|6167_1 162 PNKPRGYISAFNYFAKSFRNGLGDQNPGLDIRSPEQNNRlnriTGRRWKLLLSSEREYYDIAAVRDKIRYLKEM 235
                 9**************************9999888865541111689************************9998 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 1e-05
   PF09011.5   8 rnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkk 64 
                  + Y +Fv   ++e    g + + +l++ s++ + +Wk+++++e   Ye  A +  k
  MMETSP0890-20130614|6167_1 282 ISEYTVFV---QQEIMDIGVKCA-NLSNHSRYFGMRWKSMTQDEHRLYEYLADKMNK 334
                 68899999...677777899998.999**********************99977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.57
# Mc/sec: 1392.37
//
Query:       MMETSP0890-20130614|6172_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-14   52.0   0.5    3.3e-07   29.4   0.0    2.3  2  PF01266.19 FAD dependent oxidoreductase
    9.8e-11   41.7   0.1    3.3e-09   36.7   0.0    2.5  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    1.8e-10   39.7   0.2    9.4e-08   30.8   0.1    2.4  2  PF03486.9  HI0933-like protein
    1.2e-09   37.4   1.2    1.6e-06   27.1   0.1    2.6  2  PF00890.19 FAD binding domain
      3e-09   36.1   0.1     0.0012   17.6   0.0    3.2  3  PF01134.17 Glucose inhibited division protein A
    1.3e-08   34.9   0.2    4.6e-07   29.9   0.1    2.9  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    7.4e-08   31.6   0.1    1.5e-05   24.0   0.0    2.6  2  PF01946.12 Thi4 family
    2.5e-06   26.6   0.1    2.3e-05   23.5   0.0    2.1  2  PF01494.14 FAD binding domain
    4.8e-06   26.3   0.0    1.9e-05   24.4   0.0    2.1  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    1.2e-05   25.0   2.2      0.027   14.1   0.2    2.5  2  PF13454.1  FAD-NAD(P)-binding
    3.1e-05   24.1   0.2     0.0052   17.0   0.0    3.1  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    6.2e-05   22.1   3.1      0.063   12.2   0.0    2.6  3  PF01593.19 Flavin containing amine oxidoreductase
    0.00051   18.9   0.2     0.0024   16.7   0.0    2.1  2  PF05834.7  Lycopene cyclase protein
     0.0012   17.8   0.2     0.0068   15.4   0.0    2.0  2  PF12831.2  FAD dependent oxidoreductase
     0.0067   16.3   0.4      0.017   14.9   0.1    1.8  1  PF13460.1  NADH(P)-binding
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.082   12.6   0.0    2.5  2  PF00899.16 ThiF family
      0.012   14.9   0.0       0.04   13.2   0.0    1.9  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.049   13.6   0.0       0.15   12.0   0.0    1.8  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
       0.06   12.3   0.1       0.13   11.3   0.1    1.5  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.066   13.1   0.1        1.6    8.6   0.0    2.8  2  PF02254.13 TrkA-N domain
      0.066   12.4   0.0       0.13   11.5   0.0    1.4  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
       0.13   11.7   0.0       0.37   10.2   0.0    1.8  1  PF08199.6  Bacteriophage E2-like protein


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   5.2e-10   3.3e-07       1      47 [.     129     175 ..     129     217 .. 0.85
   2 !   20.6   0.1   2.4e-07   0.00015     148     226 ..     241     323 ..     229     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 5.2e-10
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTSSCGGGS-EEE-S CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekgdiasgaSgrnggliha 47 
                 ++++iG+G +Gl++A eLa++g+kV+lle+g++ +   +  g+lih+
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILLERGEPVEKRGADIGKLIHR 175
                 59*****************************8766555555565555 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHH.HHG--EEEESEEEEEEEEETTC..EE.EEEEES..EEEEEEEE----THHHHHCCGTCCTTEEEEEEEEEEE CS
  PF01266.19 148 klvkalaraa.eelGveiiegtkVtglereggr..vsgvetedgs.iradkvvlAaGawsskllkllgldlpirpvrgqvlvt 226
                 +l++ l +++ ++l v+i+++t+Vt++ ++     v+g  t dg  ++ad++v+A+G+ +++  + l ++  i++ +g ++ +
  MMETSP0890-20130614|6172_1 241 RLLRNLRHYLvQQLDVHIHFRTRVTSICTDQTNtcVTGCLTVDGIrYDADALVVATGHSADEMYHALANAGAILQPKGIAVGY 323
                 556666666515569************77666677*********98***************9877776655666666655555 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   5.4e-12   3.3e-09       1     122 [.     129     301 ..     129     319 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 5.4e-12
                 SEEEE----HHHHHHHHHHHTTSEEEEE......................CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH............................................................HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvali......................ekeggtcvnrgclpkkllvevaegreeleelal............................................................kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarpr 122
                 ++++iG+GpaGl +ak+la +g+kv+l+                      + e + c+                        +                                                            ++v   ++ ++ i+++++v++i  ++ + ++ +g+     + +g ++ +d+lv+AtG ++ 
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILLergepvekrgadigklihrrllDPESNFCFG-----------------------EggagtwsdgklttrigrneiwsrrvletfvqngasaniliagaphlgtdtlvrllrnlrhYLV---QQLDVHIHFRTRVTSICTDQTN-TCVTGC----LTVDGIRYDADALVVATGHSAD 301
                 69**************************7777776666666666666666333333332.......................02333344444444444444445556788888899999999999*********99*98876666...567999999*******555442.244444....4667889***********7654 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   1.5e-10   9.4e-08       2      35 ..     129     162 ..     128     167 .. 0.91
   2 !    6.5   0.0    0.0035       2.2     119     164 ..     251     298 ..     236     360 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.5e-10
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakkl 35 
                 ++iviG+G+AGl++A ++a++g kV+ll++++ +
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILLERGEPV 162
                 79***************************99755 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0035
   PF03486.9 119 lkeagvkirletevksvekeedgafrvkt..kseeeleadklvlAtGG 164
                 +++++v+i+ +t+v+s+ +++ ++    +   ++ ++ ad+lv+AtG 
  MMETSP0890-20130614|6172_1 251 VQQLDVHIHFRTRVTSICTDQTNTCVTGCltVDGIRYDADALVVATGH 298
                 57889************887777655444324899**********885 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   2.6e-09   1.6e-06       2      34 ..     130     162 ..     129     167 .. 0.93
   2 !    8.4   0.1    0.0013      0.78     139     231 ..     235     348 ..     220     352 .. 0.59

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.6e-09
                 EEEE-------HHHHHHHCHTT-EEEE-SS-CC CS
  PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqet 34 
                 ++ViG+G AGl +A e+ae+g kv+++e ++++
  MMETSP0890-20130614|6172_1 130 IIVIGAGPAGLFCAKELAEQGFKVILLERGEPV 162
                 79***************************9985 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0013
                 --HHHHHHHHHHHC-T....TEEEE-SEEEEE--BG.--BB---EEEET................TT-SEEEEEES.EEEE-----GG..............GSSSBSS-TT--- CS
  PF00890.19 139 ghallarllesareag....kvdfqerhradeLive.dgrvtGvvvenp................rsgrevrirakaavvlatgGfgrd.rrallkellgaaaeaettnapantG 231
                 g   l+rll+++r++     +v++++r+r++++ ++ ++++++  ++ +                +  +     a+a+ +l+  G+    r + ++ l++++ +  +++    tG
  MMETSP0890-20130614|6172_1 235 GTDTLVRLLRNLRHYLvqqlDVHIHFRTRVTSICTDqTNTCVTGCLTVDgirydadalvvatghsA-DEMYHALANAGAILQPKGIAVGyRIEHPQALINRITYGPSLARRVKTG 348
                 555566666666666566669**************7444444444442223444446666555422.222234444466666666666665556666666666666555555555 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.9e-06    0.0012       1      28 [.     129     156 ..     129     174 .. 0.83
   2 !    8.5   0.0    0.0011      0.69     100     150 ..     245     298 ..     240     367 .. 0.83
   3 !    6.3   0.0    0.0052       3.2     301     388 ..     515     604 ..     460     607 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.9e-06
                 SEEEE-------HHHHHHHH----EEEE CS
  PF01134.17   1 dviViGgGhAGceAAlaaarlGakvlLi 28 
                 ++iViG+G AG+ +A ++a+ G+kv+L+
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILL 156
                 69*************************9 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0011
                 HHHHHHHTSTTEEE.EES-EEE--BSS..SBB---EE----B-EESEEEE---- CS
  PF01134.17 100 evteklenepnlei.ieeeveelivee..kkvkgvvtedgetikakavviatGt 150
                 +++++l ++ +++i ++ +v+++ +++  + v+g +t dg  + a+a v+atG 
  MMETSP0890-20130614|6172_1 245 NLRHYLVQQLDVHIhFRTRVTSICTDQtnTCVTGCLTVDGIRYDADALVVATGH 298
                 567778888888885688999998866768899********************8 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0052
                 EEE-----S-HHHHHHHHTT----TT--EEE---EEEEEE--GGGB-T.TSBBSS-B--EE---------.-TTT---------HHHHHH CS
  PF01134.17 301 ylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqlln.tLetkkvkgLflAGqinGteG.YeEaaaqGllAGinaarka 388
                 y++ +  +l +   +++  s+pG+   e + +G+  +  +    q  + tLe   +++Lf +G+  G  G  + aa  G+  ++ +a k+
  MMETSP0890-20130614|6172_1 515 YPEVIHETLATALLDHFEPSMPGFICPEAILHGVETRTSAPVQVQRDKdTLEAIGITNLFPCGEGAGHAGgIVSAAVDGIRVAHAVAEKF 604
                 5555555555555555555666666666666666666655444444455*******************662777777***9999998876 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   7.4e-10   4.6e-07       1     138 [.     131     300 ..     131     335 .. 0.62

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 7.4e-10
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakp...Gghwlkaysfvrlhqpsffssdfgvndleklsldsspkwrikaelasgeei.sa..................................yledvarrlglkvrlstrvteveregdr....fevrvtdgrevrakalvlatgavs 138
                 +V+GAG+aGl  a +l e+g + +i+++r++ +   G+ + k   ++rl +p+   +++    +++  + ++   ++ +      ei s+                                      ++++l++ ++++trvt++  ++ +     +++v++  +++a+alv+atg+  
  MMETSP0890-20130614|6172_1 131 IVIGAGPAGLFCAKELAEQGFK-VILLERGEPVekrGADIGKL-IHRRLLDPES--NFC----FGEGGAGTWSDGKL-TTRIGRNEIwSRrvletfvqngasaniliagaphlgtdtlvrllrnLRHYLVQQLDVHIHFRTRVTSICTDQTNtcvtGCLTVDGI-RYDADALVVATGHSA 300
                 69********************.*****886541114444443.5777777762..222....22222222222221.1112222221223333455555555666667777777766655553333355555777**********999777334455666666.************743 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.4e-08   1.5e-05      13      48 ..     123     158 ..     115     166 .. 0.89
   2 ?    4.6   0.1     0.021        13     124     166 ..     258     301 ..     209     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.4e-08
                 HHHTEEEEEEE-------HHHHHHHTSTS-EEEEES CS
  PF01946.12  13 lkyaesDvvivGaGssGltaayylakkdlkvailer 48 
                  ++ ++ ++++GaG++Gl +a+ la++++kv++ler
  MMETSP0890-20130614|6172_1 123 KENHKKKIIVIGAGPAGLFCAKELAEQGFKVILLER 158
                 5667789****************************8 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.021
                 ---.------EEEEHHHHT-...T---EE-EEEEEEE------- CS
  PF01946.12 124 vrdgervaGvvinwtlvelag.lhvDPlvieakvvvdatGhdae 166
                 ++  +rv+ ++++ t   ++g l vD    +a ++v atGh a+
  MMETSP0890-20130614|6172_1 258 IHFRTRVTSICTDQTNTCVTGcLTVDGIRYDADALVVATGHSAD 301
                 444579******999887777377*****************986 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.7e-08   2.3e-05       3      34 ..     129     160 ..     127     179 .. 0.89
   2 ?    0.7   0.0      0.32     2e+02      37      79 ..     201     243 ..     196     285 .. 0.67

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.7e-08
                 CEEE--------HHHHHHHHH.HHEEEEESSS CS
  PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekhs 34 
                 +++++GaGpaGl  a++L+e+G +v+l+e+ +
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILLERGE 160
                 679**************************976 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.32
                 CH------BEHHHHHHHHC---HHHHHCT-.EEE--EEEEEEE CS
  PF01494.14  37 vvlprAdglnqrtmellrqlGledrilaegapnelmgealyne 79 
                 ++ +r ++ + r +e++ q G  ++il  gap+ ++ ++++  
  MMETSP0890-20130614|6172_1 201 TRIGRNEIWSRRVLETFVQNGASANILIAGAPHLGTDTLVRLL 243
                 5566778888888888888888888888888888877777665 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.1e-08   1.9e-05       1      28 [.     132     159 ..     132     162 .. 0.96

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.1e-08
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekr 28 
                 ++GaG +Gl +A +La++g++v +le++
  MMETSP0890-20130614|6172_1 132 VIGAGPAGLFCAKELAEQGFKVILLERG 159
                 8*************************98 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00074      0.46       2      33 ..     132     158 ..     131     167 .. 0.78
   2 !   14.1   0.2   4.3e-05     0.027     105     155 ..     244     298 ..     237     299 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00074
   PF13454.1   2 IiGaGprGlsvlerLlarakkekpleitvfdp 33 
                 +iGaGp+Gl ++++L+++      +++ + ++
  MMETSP0890-20130614|6172_1 132 VIGAGPAGLFCAKELAEQG-----FKVILLER 158
                 9***************994.....55555555 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 4.3e-05
   PF13454.1 105 eelvarlpegvtvrvh.raevvdlepegdgqtv...lladgesleadaVvlAtGh 155
                 ++l+  l ++++v++h r++v+++ +++++ +v   l+ dg +++ada v+AtGh
  MMETSP0890-20130614|6172_1 244 RNLRHYLVQQLDVHIHfRTRVTSICTDQTNTCVtgcLTVDGIRYDADALVVATGH 298
                 4455555566677777699*******999987744355899************** PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.8   1.8e+03      34      68 ..      37      71 ..      31      80 .. 0.78
   2 !   17.0   0.0   8.3e-06    0.0052       1      50 [.     129     177 ..     129     189 .. 0.88
   3 ?    3.0   0.0      0.19   1.2e+02      45      72 ..     245     273 ..     236     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.8
                SSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEEEE CS
  PF00070.22 34 llraldeeiakilqkklekngievllntkveeieg 68
                +  + d+ + +   kk +k+ ++ l n kv +i+ 
  MMETSP0890-20130614|6172_1 37 PGAGSDPAVVSSALKKATKRRVKKLVNGKVLSIDR 71
                556778888888889999999**999999999985 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 8.3e-06
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHH CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrllraldeeiakilqkkl 50 
                 +++v+G+G  Gl +A +la+ g kV ++er++ +  + +++i+k++ ++l
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILLERGEPVE-KRGADIGKLIHRRL 177
                 699***************************99888.66777777777766 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.19
                 HHHHHH.HHTTEEEETTEEEEEEEESEEE CS
  PF00070.22  45 ilqkkl.ekngievllntkveeiegsadg 72 
                 +l+++l +++ + +++ t+v++i +++++
  MMETSP0890-20130614|6172_1 245 NLRHYLvQQLDVHIHFRTRVTSICTDQTN 273
                 5667773556*************998886 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0    0.0001     0.063       2      23 ..     138     159 ..     137     162 .. 0.93
   2 !    9.9   0.1   0.00049      0.31     209     262 ..     241     297 ..     225     301 .. 0.75
   3 ?   -2.7   0.1       3.4   2.1e+03     406     449 ..     559     600 ..     551     601 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
                 ---HHHHHHHH---EEEEEESS CS
  PF01593.19   2 aGLaAArqLlqaGfdVtvlEAr 23 
                 aGL +A++L+++Gf+V++lE+ 
  MMETSP0890-20130614|6172_1 138 AGLFCAKELAEQGFKVILLERG 159
                 9*******************86 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00049
                 HHHHHHHHHCCCCEGTTEETTEEEEEEEEETSCEEEEEECSS......EEEESEEEE-S- CS
  PF01593.19 209 gylsvlvalaegldggvvrlnkrVksitkegdgvtvttedgr......tykaDaVvvTlp 262
                 ++l  l +    +++ ++++++rV+si ++    t t+++g        y aDa vv++ 
  MMETSP0890-20130614|6172_1 241 RLLRNLRHYLVQQLDVHIHFRTRVTSICTDQ---TNTCVTGCltvdgiRYDADALVVATG 297
                 55566666666777899************95...66666666666677******888876 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 3.4
                 HHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHH CS
  PF01593.19 406 gddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAari 449
                 ++d + l +  + +lf +Ge     + g++  A   G+r+A ++
  MMETSP0890-20130614|6172_1 559 QRDKDTLEAIGITNLFPCGEGAG--HAGGIVSAAVDGIRVAHAV 600
                 45666666655589999999988..559*************887 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.8e-06    0.0024       2      34 ..     130     160 ..     129     166 .. 0.91
   2 ?   -1.4   0.0       1.2   7.5e+02      91     146 ..     248     304 ..     241     323 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.8e-06
   PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagp 34 
                 ++++GaG+Agl +A +l  a++g++v+l++ g+
  MMETSP0890-20130614|6172_1 130 IIVIGAGPAGLFCAKEL--AEQGFKVILLERGE 160
                 79***************..99********9876 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
   PF05834.7  91 eellkrlveegvllleakvesveeeea...eslvvledgetiearlvidargasakkal 146
                 + l ++l    ++  +++v+s+  ++     + + + dg + +a++ ++a+g+sa++ +
  MMETSP0890-20130614|6172_1 248 HYLVQQLD--VHIHFRTRVTSICTDQTntcVTGCLTVDGIRYDADALVVATGHSADEMY 304
                 44555544..567788999999888884322334466788999*********9988554 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05    0.0068       2      31 ..     130     159 ..     129     162 .. 0.95
   2 ?   -0.1   0.0      0.54   3.4e+02      94     148 ..     245     298 ..     192     303 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.1e-05
   PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLverr 31 
                 ++V+G+gpaG+++A   a +G kv+L+er+
  MMETSP0890-20130614|6172_1 130 IIVIGAGPAGLFCAKELAEQGFKVILLERG 159
                 79**************************96 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.54
   PF12831.2  94 evleemlaeagvtvllhtrlvsvekegdr..itavtvesksgrltirAkvfiDATgd 148
                 ++ + ++++ +v++ + tr++s+ +++++  +t+  +     ++++ A+  + ATg+
  MMETSP0890-20130614|6172_1 245 NLRHYLVQQLDVHIHFRTRVTSICTDQTNtcVTGCLTV---DGIRYDADALVVATGH 298
                 44455668999***********9998522245555554...4999999999999986 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.8e-05     0.017       1      33 [.     130     161 ..     130     178 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-05
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnps 33 
                 I+viGA G +G  ++kel+++g++v +l R + 
  MMETSP0890-20130614|6172_1 130 IIVIGA-GPAGLFCAKELAEQGFKVILLERGEP 161
                 89***9.*********************99874 PP

>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013     0.082       2      31 ..     127     156 ..     126     165 .. 0.87
   2 ?   -1.3   0.0       2.5   1.5e+03       3      23 ..     224     244 ..     222     280 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
  PF00899.16   2 eskvlvvGaGglGseaaeaLaraGvgkltl 31 
                 ++k++v+GaG  G ++a++La  G++ + l
  MMETSP0890-20130614|6172_1 127 KKKIIVIGAGPAGLFCAKELAEQGFKVILL 156
                 689**********************98876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.5
  PF00899.16   3 skvlvvGaGglGseaaeaLar 23 
                 +++l++Ga  lG+ ++  L r
  MMETSP0890-20130614|6172_1 224 ANILIAGAPHLGTDTLVRLLR 244
                 678888888888888877766 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.4e-05      0.04       1      35 [.     130     164 ..     130     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.4e-05
                 EEEE-----------HHHHHHH-EEEE----HHHH CS
  PF02558.11   1 iailGaGaiGsllaakLakagadvtlilrsrrlea 35 
                 i ++GaG  G ++a +La++g +v+l+ r++++e+
  MMETSP0890-20130614|6172_1 130 IIVIGAGPAGLFCAKELAEQGFKVILLERGEPVEK 164
                 78***************************996664 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00024      0.15      10      42 ..     125     156 ..     116     161 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00024
                 ..--EEEEE----HHHHHGGG--TTT-E.EEE- CS
  PF01488.15  10 lkgkkvlviGAGemarlvakhLlekgvkkivia 42 
                  ++kk++viGAG ++   ak L+e+g+k ++++
  MMETSP0890-20130614|6172_1 125 NHKKKIIVIGAGPAGLFCAKELAEQGFK-VILL 156
                 4689***********************9.5444 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00021      0.13      19      73 ..     111     164 ..      96     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00021
                 CTT--.--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--... CS
  PF02826.14  19 regewssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkee 73 
                 ++g+  ++  +++ke ++k++ +iG+G  G   ak l++ g+kv+  +r +  e+
  MMETSP0890-20130614|6172_1 111 KDGQK-KNIVHHSKENHKKKIIVIGAGPAGLFCAKELAEQGFKVILLERGEPVEK 164
                 45544.56678899********************************999866444 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0026       1.6       1      32 [.     130     161 ..     130     181 .. 0.80
   2 ?    0.9   0.0      0.64     4e+02      62      82 ..     288     308 ..     284     334 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0026
                 EEEE---HHHHHHHCCCHH--..EEEEES-HH CS
  PF02254.13   1 iiiiGlGrvGrslaeeLregekdvvvidkdee 32 
                 ii+iG+G  G   a+eL e++ +v+++++ e 
  MMETSP0890-20130614|6172_1 130 IIVIGAGPAGLFCAKELAEQGFKVILLERGEP 161
                 8******************6645999988664 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.64
                 ---EEEE--SSHHHHHHHHHH CS
  PF02254.13  62 eadaviaatgddeanllavll 82 
                 +ada+++atg+ ++ +  +l+
  MMETSP0890-20130614|6172_1 288 DADALVVATGHSADEMYHALA 308
                 79********99888776554 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00021      0.13       2      30 ..     129     157 ..     128     163 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
                 EEEEE------------TTT---EEE--- CS
   PF03721.9   2 kiaviGlGYvGlptavvlaekghevvgvD 30 
                 ki viG+G  Gl +a  lae+g++v++++
  MMETSP0890-20130614|6172_1 129 KIIVIGAGPAGLFCAKELAEQGFKVILLE 157
                 9*************************875 PP

>> PF08199.6  Bacteriophage E2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0006      0.37      11      28 ..     170     186 ..     167     188 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0006
   PF08199.6  11 GKsIKRRvLIDNFSNFCy 28 
                 GK I RR+ +D  SNFC+
  MMETSP0890-20130614|6172_1 170 GKLIHRRL-LDPESNFCF 186
                 9******5.5*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.08u 0.40s 00:00:01.48 Elapsed: 00:00:00.89
# Mc/sec: 1655.91
//
Query:       MMETSP0890-20130614|6176_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-13   48.4   0.0    1.7e-06   27.1   0.0    2.3  2  PF03803.10 Scramblase


Domain annotation for each model (and alignments):
>> PF03803.10  Scramblase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.3e-10   1.7e-06      16     100 ..      91     183 ..      78     212 .. 0.78
   2 !   19.0   0.0   3.9e-08   0.00053     142     222 ..     256     341 ..     220     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.3e-10
  PF03803.10  16 eyLleldtllveqqiellevll..gfEtkNrYvik..dvngqkvyyaaeesnalaRqllgtrRpfkvkivDnlg..nevltlkR.pfscis.c 100
                 ++L +  +l ++q++++le l   + E++N ++++  ++ g +v +a e+s +  R +++ + +f ++++ + +  n ++tl+R   +c++ c
  MMETSP0890-20130614|6176_1  91 SFLGSSTKLEINQKVQWLEALSlgCCEQQNVFDVRldNKEGAHVLTAKEKSACADRICCKPKHSFLLHVTPAYDvnNVLVTLERrGCECTKlC 183
                 5677788999*********8643389******98655999*****************************976542155566654156666655 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 3.9e-08
  PF03803.10 142 vlsvegplv..kisacvldkeFevktadgs...evvgsisrkwsGllrEaftDadtyvvrFpldLdvklkavllgaafliDfdyFe 222
                 v+sv+gp++   +s+ + +++F+ ++a g+    +v  i r+ + + + + tD+d+y++++++  +++ ka  + + + +D ++Fe
  MMETSP0890-20130614|6176_1 256 VASVKGPFIfgGCSELCCKSTFNYQSAGGNesaDIVHLIPRDCGEFCKFLCTDSDNYSLTYDKSASPDTKAHAILSSLILDTMFFE 341
                 56788887522577788888999988865411157888999********************************99**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.47s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1237.12
//
Query:       MMETSP0890-20130614|6175_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-41  134.1  14.2    1.2e-09   36.6   0.8    4.2  4  PF00036.27 EF hand
    5.4e-37  125.6   5.1      2e-20   72.5   1.0    2.1  2  PF13499.1  EF-hand domain pair
    1.2e-32  111.1  12.2    1.6e-17   62.6   0.7    4.1  4  PF13833.1  EF-hand domain pair
    8.9e-30   99.7   8.3    1.1e-09   37.2   0.1    4.3  4  PF13405.1  EF-hand domain
    1.8e-27   93.3   8.7    7.1e-07   28.1   0.1    4.3  4  PF13202.1  EF hand
    3.3e-10   39.4   0.5    9.2e-05   22.0   0.1    2.2  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
    2.8e-09   36.8   0.0    0.00022   21.1   0.0    2.1  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
    2.9e-06   26.6   0.3      0.045   13.2   0.0    3.6  4  PF03672.8  Uncharacterised protein family (UPF0154)
    4.1e-06   26.5   1.3    4.2e-05   23.3   0.2    2.4  2  PF08726.5  Ca2+ insensitive EF hand
     0.0011   18.5   0.2       0.28   10.7   0.0    2.3  2  PF05099.8  Tellurite resistance protein TerB
     0.0016   17.8   0.1      0.033   13.6   0.1    2.5  1  PF05042.8  Caleosin related protein
     0.0024   17.7   1.1      0.019   14.8   0.2    2.4  2  PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
     0.0044   16.8   0.4       0.29   11.0   0.1    2.5  2  PF03874.11 RNA polymerase Rpb4
     0.0051   16.1   1.3     0.0058   15.9   0.9    1.2  1  PF06513.6  Repeat of unknown function (DUF1103)
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.093   12.1   0.0    1.8  2  PF08235.8  LNS2 (Lipin/Ned1/Smp2)
      0.027   12.7   0.1       0.48    8.5   0.0    2.0  2  PF05872.7  Bacterial protein of unknown function (DUF853)
      0.067   12.8   0.2         12    5.6   0.0    2.4  2  PF09114.5  Transcription factor MotA, activation domain
      0.068   13.3   0.7         12    6.2   0.0    2.6  2  PF13155.1  Toprim-like
      0.096   12.6   0.5        1.4    8.9   0.1    2.6  2  PF07308.8  Protein of unknown function (DUF1456)
       0.13   12.3   0.0        1.7    8.7   0.0    2.1  2  PF08976.6  Domain of unknown function (DUF1880)
       0.13   11.9   0.3          1    9.0   0.0    2.0  2  PF14292.1  SusE outer membrane protein
        1.1    9.4   5.6         28    5.0   0.6    2.7  2  PF13517.1  Family description
        1.6    8.1   4.7         31    4.0   0.2    3.1  3  PF12368.3  Protein of unknown function (DUF3650)


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   2.7e-12   1.6e-09       1      29 []      12      40 ..      12      40 .. 0.96
   2 !   33.1   0.1   2.7e-11   1.6e-08       1      28 [.      48      75 ..      48      76 .. 0.94
   3 !   36.2   0.1   2.6e-12   1.6e-09       1      29 []      85     113 ..      85     113 .. 0.95
   4 !   36.6   0.8     2e-12   1.2e-09       1      28 [.     121     148 ..     121     149 .] 0.95

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.7e-12
                HHHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkkl 29
                e+keaF++fDkDgdG+I+ +E+ +++++l
  MMETSP0890-20130614|6175_1 12 EFKEAFSLFDKDGDGTITTKELGTVMRSL 40
                79************************986 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 2.7e-11
                HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkk 28
                el ++++e+D Dg+G+I+f Ef++++++
  MMETSP0890-20130614|6175_1 48 ELADMINEVDADGNGTIDFPEFLTMMAR 75
                7889**********************86 PP

  == domain 3    score: 36.2 bits;  conditional E-value: 2.6e-12
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkkl 29 
                 e+ eaFk+fDkDg+G+Is  E+++++++l
  MMETSP0890-20130614|6175_1  85 EILEAFKVFDKDGNGFISAAELRHIMTNL 113
                 789***********************975 PP

  == domain 4    score: 36.6 bits;  conditional E-value: 2e-12
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 e++e+ +e+D DgdG+I++eEf++++++
  MMETSP0890-20130614|6175_1 121 EVDEMLREADIDGDGQINYEEFVKMMMS 148
                 79************************86 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.1   1.1e-17   6.7e-15       3      66 .]      14      73 ..       8      73 .. 0.92
   2 !   72.5   1.0   3.4e-23     2e-20       2      66 .]      86     146 ..      84     146 .. 0.96

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.1e-17
   PF13499.1  3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                keaF+l+Dkdgdg+++  eL  +++ lg    +  ++ +l + ++e+D +g+G+++f+Efl+++
  MMETSP0890-20130614|6175_1 14 KEAFSLFDKDGDGTITTKELGTVMRSLG----QNPTEAELADMINEVDADGNGTIDFPEFLTMM 73
                789*************************....77777777777*******************98 PP

  == domain 2    score: 72.5 bits;  conditional E-value: 3.4e-23
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 + eaFk +Dkdg+g+++ +eL++++++lg++l+deev+e+    ++e+D +gdG++++eEf++++
  MMETSP0890-20130614|6175_1  86 ILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEM----LREADIDGDGQINYEEFVKMM 146
                 6799*************************99999999999....*******************98 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   0.00017       0.1      27      47 ..      13      33 ..       3      38 .. 0.85
   2 !   47.1   0.1     2e-15   1.2e-12       2      53 ..      25      75 ..      24      76 .. 0.96
   3 !    9.3   0.1    0.0012      0.72      23      43 ..      82     102 ..      77     102 .. 0.91
   4 !   62.6   0.7   2.8e-20   1.6e-17       2      51 ..      98     146 ..      97     149 .] 0.96

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00017
   PF13833.1 27 vdilfrefDtdgdGkisfeEF 47
                + + f++fD dgdG i+ +E 
  MMETSP0890-20130614|6175_1 13 FKEAFSLFDKDGDGTITTKEL 33
                55679***********99885 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 2e-15
   PF13833.1  2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53
                +G It +eL   +++lg++ ++e e+ ++++e+D+dg+G i+f EF+++++r
  MMETSP0890-20130614|6175_1 25 DGTITTKELGTVMRSLGQN-PTEAELADMINEVDADGNGTIDFPEFLTMMAR 75
                89***********999***.******************************98 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0012
   PF13833.1  23 seeevdilfrefDtdgdGkis 43 
                 seee+ + f++fD dg+G is
  MMETSP0890-20130614|6175_1  82 SEEEILEAFKVFDKDGNGFIS 102
                 7899999***********876 PP

  == domain 4    score: 62.6 bits;  conditional E-value: 2.8e-20
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvll 51 
                 +G I+++eL++++++lg k l++eevd+++re+D+dgdG i++eEF++++
  MMETSP0890-20130614|6175_1  98 NGFISAAELRHIMTNLGEK-LTDEEVDEMLREADIDGDGQINYEEFVKMM 146
                 8************999***.*****************************9 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   1.8e-12   1.1e-09       1      31 []      12      41 ..      12      41 .. 0.96
   2 !   15.0   0.1   2.5e-05     0.015       7      27 ..      54      74 ..      48      81 .. 0.86
   3 !   34.0   0.1   1.9e-11   1.1e-08       1      31 []      85     114 ..      85     114 .. 0.93
   4 !   16.4   0.0   8.7e-06    0.0051       4      27 ..     124     147 ..     121     149 .] 0.84

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.8e-12
                HHH---GCC-------B---HHHHHHH.H-- CS
   PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrkslg 31
                e++eaF lfDkdgdG+i+ +EL+ ++r slg
  MMETSP0890-20130614|6175_1 12 EFKEAFSLFDKDGDGTITTKELGTVMR-SLG 41
                79*************************.887 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.5e-05
                GCC-------B---HHHHHHH CS
   PF13405.1  7 klfDkdgdGkidaeELrdaLr 27
                +  D dg+G+id+ E++ ++ 
  MMETSP0890-20130614|6175_1 54 NEVDADGNGTIDFPEFLTMMA 74
                678*************99986 PP

  == domain 3    score: 34.0 bits;  conditional E-value: 1.9e-11
                 HHH---GCC-------B---HHHHHHH.H-- CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrkslg 31 
                 e+ eaFk fDkdg+G+i+a+ELr++++ +lg
  MMETSP0890-20130614|6175_1  85 EILEAFKVFDKDGNGFISAAELRHIMT-NLG 114
                 6889**********************9.776 PP

  == domain 4    score: 16.4 bits;  conditional E-value: 8.7e-06
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 e  +  D dgdG+i+ eE+++++ 
  MMETSP0890-20130614|6175_1 124 EMLREADIDGDGQINYEEFVKMMM 147
                 55678899************9986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   1.2e-09   7.1e-07       2      25 .]      14      37 ..      13      37 .. 0.90
   2 !   19.1   0.0   8.8e-07   0.00052       3      25 .]      51      73 ..      49      74 .. 0.87
   3 !   27.3   0.0   2.1e-09   1.3e-06       1      24 [.      87     109 ..      87     110 .. 0.90
   4 !   21.9   0.1   1.1e-07   6.6e-05       3      25 .]     124     146 ..     122     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.2e-09
                HHHHHHH--S----B-HHHHHHHH CS
   PF13202.1  2 kdtFrafDlNgDGkIsreELkrlv 25
                k++F+ fD++gDG+I+ +EL +++
  MMETSP0890-20130614|6175_1 14 KEAFSLFDKDGDGTITTKELGTVM 37
                678*****************9975 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 8.8e-07
                HHHHHH--S----B-HHHHHHHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreELkrlv 25
                d+ +++D++g G+I++ E+ +++
  MMETSP0890-20130614|6175_1 51 DMINEVDADGNGTIDFPEFLTMM 73
                67789**************9865 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 2.1e-09
                 HHHHHHHH--S----B-HHHHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                 l++ F++fD++g G+Is+ EL+ +
  MMETSP0890-20130614|6175_1  87 LEA-FKVFDKDGNGFISAAELRHI 109
                 567.*****************975 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 1.1e-07
                 HHHHHH--S----B-HHHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrlv 25 
                 +++r++D +gDG+I+ eE+ +++
  MMETSP0890-20130614|6175_1 124 EMLREADIDGDGQINYEEFVKMM 146
                 4799***************8864 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.2e-05    0.0069       3      69 ..       4      73 ..       1      80 [. 0.82
   2 !   22.0   0.1   1.6e-07   9.2e-05      12      69 ..      89     146 ..      76     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.2e-05
   PF12763.2  3 kleeleikkyweifsgl.kpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciam 69
                +l e +i ++ e fs   k+ d ++t +++ +v+++   + +e +l+ + +  d d +g++df ef  +m
  MMETSP0890-20130614|6175_1  4 QLTEEQIAEFKEAFSLFdKDGDGTITTKELGTVMRSlgQNPTEAELADMINEVDADGNGTIDFPEFLTMM 73
                788888999999999872467899**********983234567899999999999999********9888 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.6e-07
   PF12763.2  12 yweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciam 69 
                  +++f+  k+ +  ++  ++  ++ n   kl++++++++   adid dg++++eef+ +m
  MMETSP0890-20130614|6175_1  89 AFKVFD--KDGNGFISAAELRHIMTNlgEKLTDEEVDEMLREADIDGDGQINYEEFVKMM 146
                 344443..5678899999999999985569**************************9877 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.1e-05     0.031      59     111 ..      16      70 ..       3      72 .. 0.90
   2 !   21.1   0.0   3.8e-07   0.00022      52     112 ..      82     144 ..      70     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.1e-05
   PF10591.4  59 kFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                  F+ +D++ d+ ++++El  + ++l   + e+  + ++++ Dad +++i++ E+ 
  MMETSP0890-20130614|6175_1  16 AFSLFDKDGDGTITTKELGTVMRSLgqNPTEAELADMINEVDADGNGTIDFPEFL 70 
                 5999*********************88899***********************96 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 3.8e-07
   PF10591.4  52 ckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWck 112
                  +e++   F+ +D++ ++++s +El+++ ++l     ++ ++e+++++D+d d++i+ eE+ k
  MMETSP0890-20130614|6175_1  82 SEEEILEAFKVFDKDGNGFISAAELRHIMTNLgeKLTDEEVDEMLREADIDGDGQINYEEFVK 144
                 45666678************************886778889*******************975 PP

>> PF03672.8  Uncharacterised protein family (UPF0154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0036       2.1      32      61 ..      28      57 ..      25      59 .. 0.87
   2 ?    0.8   0.0      0.58   3.4e+02      37      59 ..      70      92 ..      67      97 .. 0.81
   3 !   13.2   0.0   7.6e-05     0.045      31      60 ..     100     129 ..      89     132 .. 0.89
   4 ?   -0.8   0.1       1.8   1.1e+03      34      42 ..     140     148 ..     137     149 .] 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0036
   PF03672.8 32 inedairlmlaqmGrkpSekqinqilkaik 61
                i+ + +  ++ ++G++p e  + ++++++ 
  MMETSP0890-20130614|6175_1 28 ITTKELGTVMRSLGQNPTEAELADMINEVD 57
                666778889****************99876 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.58
   PF03672.8 37 irlmlaqmGrkpSekqinqilka 59
                + +m  +m    Se+ i + +k 
  MMETSP0890-20130614|6175_1 70 LTMMARKMKDTDSEEEILEAFKV 92
                67999999999999999887775 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 7.6e-05
   PF03672.8  31 PinedairlmlaqmGrkpSekqinqilkai 60 
                  i+   +r +++++G k+ ++ ++++l+++
  MMETSP0890-20130614|6175_1 100 FISAAELRHIMTNLGEKLTDEEVDEMLREA 129
                 588889*********************986 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 1.8
   PF03672.8  34 edairlmla 42 
                 e+ +++m+ 
  MMETSP0890-20130614|6175_1 140 EEFVKMMMS 148
                 778999997 PP

>> PF08726.5  Ca2+ insensitive EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.26   1.6e+02       1      64 [.       3      70 ..       3      75 .. 0.57
   2 !   23.3   0.2   7.1e-08   4.2e-05       1      68 [.      79     147 ..      79     148 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.26
   PF08726.5  1 dtdsaeqv...eeaFral.aegKpYvTeedL...raallpeqaeyllerMpeysgpegdetegayDYesFl 64
                d+ ++eq+   +eaF    ++g   +T ++L    ++l ++ +e  l+ M +  +++    +g  D+ +Fl
  MMETSP0890-20130614|6175_1  3 DQLTEEQIaefKEAFSLFdKDGDGTITTKELgtvMRSLGQNPTEAELADMINEVDAD---GNGTIDFPEFL 70
                677888873334688888778888888888733235666666644444444444344...34455555555 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 7.1e-08
   PF08726.5   1 dtdsaeqveeaFral.aegKpYvTeedLraallp..eqa.eyllerMpeysgpegdetegayDYesFleklf 68 
                 dtds+e+++eaF++  ++g  ++ + +Lr+ +++  e+  +  +++M +  + +     g+  Ye+F++ ++
  MMETSP0890-20130614|6175_1  79 DTDSEEEILEAFKVFdKDGNGFISAAELRHIMTNlgEKLtDEEVDEMLREADID---GDGQINYEEFVKMMM 147
                 89***************************9766433444477778887777777...557778888888876 PP

>> PF05099.8  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00047      0.28      37     102 ..      25      89 ..      23      99 .. 0.82
   2 ?    6.1   0.0     0.013       7.8      40      87 ..     101     146 ..      90     149 .] 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00047
   PF05099.8  37 DgqvteeEiqairellrsrygldpeeakalielfeeaeeeaadleeftralkdafd.yeerlallea 102
                 Dg++t +E   +++ l ++    ++e++++i + ++    ++d+ ef   ++++++ ++  +++lea
  MMETSP0890-20130614|6175_1  25 DGTITTKELGTVMRSLGQNPT--EAELADMINEVDADGNGTIDFPEFLTMMARKMKdTDSEEEILEA 89 
                 9***************55555..77778888888888888************999966666666665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.013
   PF05099.8  40 vteeEiqairellrsrygldpeeakalielfeeaeeeaadleeftral 87 
                 ++++E + i++ l    +l++ee+++++++++   + ++ +eef++ +
  MMETSP0890-20130614|6175_1 101 ISAAELRHIMTNL--GEKLTDEEVDEMLREADIDGDGQINYEEFVKMM 146
                 6888999999999..77888**********************999876 PP

>> PF05042.8  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   5.6e-05     0.033       4      49 ..       8      53 ..       5     134 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.6e-05
   PF05042.8  4 eemsvlqkhvaffdrnkdGivyPwetyqGlralGfnvivsvvlail 49
                e+ +++++  ++fd+++dG+++  e  + +r+lG n   + ++ ++
  MMETSP0890-20130614|6175_1  8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMI 53
                66778888999************************99887766554 PP

>> PF09279.6  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.64   3.8e+02       3      45 ..      14      55 ..      12      76 .. 0.52
   2 !   14.8   0.2   3.2e-05     0.019       1      70 [.      85     149 .]      85     149 .] 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.64
                HHHHHHH--.--SSEEHHHHHHHHHHTS--TT---HHHHHHHHH CS
   PF09279.6  3 eelfkeyse.nkevltaeeLrrFLneeQkeerlteeeakaiiek 45
                +e f  +++ +++++t++eL   ++   + +  te e +++i++
  MMETSP0890-20130614|6175_1 14 KEAFSLFDKdGDGTITTKELGTVMRSLGQNP--TEAELADMINE 55
                6666666444666777776655544443332..34444444444 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHH--.--SSEEHHHHHHHHHHTS--TT---HHHHHHHHHH---HHHHHTTEE-----HHHHHS- CS
   PF09279.6   1 eieelfkeyse.nkevltaeeLrrFLneeQkeerlteeeakaiiekyepneelkkkglLslegFlryLfSd 70 
                 ei e fk +++ ++++++a+eLr+ +++  ++  lt+ee+ +++ + + +     +g+++ e+F+++++S+
  MMETSP0890-20130614|6175_1  85 EILEAFKVFDKdGNGFISAAELRHIMTNLGEK--LTDEEVDEMLREADIDG----DGQINYEEFVKMMMSK 149
                 8999*****7769***********99776655..999*****999987776....6**************6 PP

>> PF03874.11  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        64      85     113 ..      29      57 ..      27      58 .. 0.91
   2 !   11.0   0.1   0.00049      0.29      85     111 ..     102     128 ..     100     130 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.11
                 SCCCCCCCSTTGTTSS-HHHHHHHHHHHH CS
  PF03874.11  85 tavelkalieslekrfsdeqleeiLdels 113
                 t+ el +++ sl +  ++ +l ++++e+ 
  MMETSP0890-20130614|6175_1  29 TTKELGTVMRSLGQNPTEAELADMINEVD 57 
                 7889**********************985 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00049
                 SCCCCCCCSTTGTTSS-HHHHHHHHHH CS
  PF03874.11  85 tavelkalieslekrfsdeqleeiLde 111
                 +a+el+ ++  l ++++de+++e+L e
  MMETSP0890-20130614|6175_1 102 SAAELRHIMTNLGEKLTDEEVDEMLRE 128
                 799*********************976 PP

>> PF06513.6  Repeat of unknown function (DUF1103)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.9   9.8e-06    0.0058      79     168 ..      47     143 ..       9     148 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.8e-06
   PF06513.6  79 kqvedgikendtegndkvkgpeiiteevkeeikkqveegi....kendtegndkvkgqei..iteevkeei.kkqveegikendteskdklkgqeii 168
                  ++ d i+e d++gn  +  pe +t   ++    + ee i    k  d +gn  +   e+  i  ++ e++   +v+e ++e d +++ ++  +e +
  MMETSP0890-20130614|6175_1  47 AELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIleafKVFDKDGNGFISAAELrhIMTNLGEKLtDEEVDEMLREADIDGDGQINYEEFV 143
                 56789999**************9998766655555555441111677999999999887433445555554167899*******9999998887765 PP

>> PF08235.8  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016     0.093       5      45 ..      23      62 ..      20      97 .. 0.80
   2 ?   -0.1   0.0      0.86   5.1e+02       8      39 ..      99     129 ..      91     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
   PF08235.8  5 diDGtitksdalGhllslvGkdktraGvaklvrkiqenGYk 45
                d DGtit    lG ++  +G++ t+a  a++++++++ G  
  MMETSP0890-20130614|6175_1 23 DGDGTITTK-ELGTVMRSLGQNPTEAELADMINEVDADGNG 62
                569****98.8************************999864 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.86
   PF08235.8   8 GtitksdalGhllslvGkdktraGvaklvrki 39 
                 G i+++  l h+++ +G+  t + v +++r+ 
  MMETSP0890-20130614|6175_1  99 GFISAA-ELRHIMTNLGEKLTDEEVDEMLREA 129
                 445555.7899999999998888888877765 PP

>> PF05872.7  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.068        41     124     166 ..       5      47 ..       3      65 .. 0.84
   2 ?    8.5   0.0   0.00081      0.48     117     164 ..      72     118 ..      68     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.068
   PF05872.7 124 lndvqegvLnivfriaDeeGllLlDlkDLrallkevadnakel 166
                 l++ q + ++ +f + D++G   +  k+L  +++ +++n+ e 
  MMETSP0890-20130614|6175_1   5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA 47 
                 788899999999************************9998765 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00081
   PF05872.7 117 lLarllelndvqegvLnivfriaDeeGllLlDlkDLrallkevadnak 164
                 ++ar ++ +d+ e +L+ +f++ D++G  ++   +Lr ++++++++  
  MMETSP0890-20130614|6175_1  72 MMARKMKDTDSEEEILE-AFKVFDKDGNGFISAAELRHIMTNLGEKLT 118
                 78999**********98.7************************99754 PP

>> PF09114.5  Transcription factor MotA, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.02        12      61      79 ..      19      37 ..      14      57 .. 0.86
   2 ?    5.4   0.0     0.023        14      62      95 ..      93     126 ..      74     147 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.02
   PF09114.5 61 lveksGdGliiteeaddii 79
                l +k GdG i+t+e   ++
  MMETSP0890-20130614|6175_1 19 LFDKDGDGTITTKELGTVM 37
                889*********9976665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.023
   PF09114.5  62 veksGdGliiteeaddiiveaaelyaqenavell 95 
                  +k G+G+i + e + i+++  e   +e+  e+l
  MMETSP0890-20130614|6175_1  93 FDKDGNGFISAAELRHIMTNLGEKLTDEEVDEML 126
                 5667777777777777776666665555555544 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019        12      45      84 ..       9      51 ..       1      70 [. 0.70
   2 ?    5.6   0.2     0.029        17      49      84 ..      89     124 ..      55     149 .] 0.75

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.019
   PF13155.1 45 re...keivlalDnDeaGrkaaeklkkalkekgkenekvkvvr 84
                +    ke    +D+D  G  ++++l   +++ g++ ++++ ++
  MMETSP0890-20130614|6175_1  9 QIaefKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELAD 51
                33344668899**************988888875444444444 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.029
   PF13155.1  49 ivlalDnDeaGrkaaeklkkalkekgkenekvkvvr 84 
                     +D+D  G   a++l++++++ g++ +  +v +
  MMETSP0890-20130614|6175_1  89 AFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDE 124
                 555799**********99999999885544444444 PP

>> PF07308.8  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.43   2.6e+02      29      42 ..      27      40 ..      15      90 .. 0.67
   2 ?    8.9   0.1    0.0023       1.4      15      55 ..     102     147 ..     100     149 .] 0.76

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.43
   PF07308.8 29 evtkeelsallkke 42
                ++t +el ++++  
  MMETSP0890-20130614|6175_1 27 TITTKELGTVMRSL 40
                55555555555542 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0023
   PF07308.8  15 kdddmveifklagvevtkeelsallkk.....edeenykecsdqvl 55 
                 + +++ +i+   g ++t ee+ ++l++     +++ ny+e   +++
  MMETSP0890-20130614|6175_1 102 SAAELRHIMTNLGEKLTDEEVDEMLREadidgDGQINYEEFVKMMM 147
                 6678889999*****************5554444447777666665 PP

>> PF08976.6  Domain of unknown function (DUF1880)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.48   2.9e+02       8      35 ..      48      75 ..      42      83 .. 0.80
   2 ?    8.7   0.0    0.0028       1.7       4      33 ..     117     146 ..     115     149 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.48
                HHHHHHTTS-B-----EEHHHHHHHT-- CS
   PF08976.6  8 qfdrlwselpvnakgrlkyqdflsklsi 35
                ++  + +e+  + +g + +++fl+ ++ 
  MMETSP0890-20130614|6175_1 48 ELADMINEVDADGNGTIDFPEFLTMMAR 75
                5666789999999**********98875 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0028
                 --HHHHHHHHTTS-B-----EEHHHHHHHT CS
   PF08976.6   4 ltdeqfdrlwselpvnakgrlkyqdflskl 33 
                 ltde+ d +  e  ++  g+++y++f+  +
  MMETSP0890-20130614|6175_1 117 LTDEEVDEMLREADIDGDGQINYEEFVKMM 146
                 9*************************9765 PP

>> PF14292.1  SusE outer membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0017         1      75     113 ..      12      47 ..       5      52 .. 0.82
   2 ?    1.1   0.0      0.48   2.9e+02      69     109 ..      93     132 ..      76     144 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0017
   PF14292.1  75 dfskavslgttdnsetsvsitvkeLNdilaklglepget 113
                 +f++a sl + d+     +it+keL ++++ lg++p+e+
  MMETSP0890-20130614|6175_1  12 EFKEAFSLFDKDG---DGTITTKELGTVMRSLGQNPTEA 47 
                 6777777766665...568*****************986 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.48
   PF14292.1  69 ldkkgndfskavslgttdnsetsvsitvkeLNdilaklgle 109
                 +dk gn f +a +l  + +     ++t +e + +l+++ + 
  MMETSP0890-20130614|6175_1  93 FDKDGNGFISAAELRHIMT-NLGEKLTDEEVDEMLREADID 132
                 7888888888888887766.555577777777777777665 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.6     0.048        28      17      55 ..      16      62 ..      10      66 .. 0.57
   2 ?    3.4   2.3      0.15        87      19      56 ..      91     136 ..      57     137 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.048
   PF13517.1 17 glrlylnngdGtft..dvaetslgaggggtg......vafgDldgDG 55
                + +l+  +gdGt t  + +++  + g+++t       +  +D dg+G
  MMETSP0890-20130614|6175_1 16 AFSLFDKDGDGTITtkELGTVMRSLGQNPTEaeladmINEVDADGNG 62
                56789999999977334455555555666662232333445555555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.15
   PF13517.1  19 rlylnngdGtftdvaetslgag....gggtg.......vafgDldgDGd 56 
                 +++  +g+G  + ++   + ++        +       ++ +D+dgDG 
  MMETSP0890-20130614|6175_1  91 KVFDKDGNGFISAAELRHIMTNlgekL---TdeevdemLREADIDGDGQ 136
                 566666666444333222222221111...122333337889*****95 PP

>> PF12368.3  Protein of unknown function (DUF3650)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.069        41      15      23 ..       4      12 ..       1      13 [. 0.88
   2 ?    0.7   0.0      0.56   3.3e+02      17      27 ..      82      92 ..      82      93 .. 0.83
   3 ?    4.0   0.2     0.053        31      15      25 ..     116     126 ..     115     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.069
   PF12368.3 15 nLSeEEvae 23
                +L+eE++ae
  MMETSP0890-20130614|6175_1  4 QLTEEQIAE 12
                8******98 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.56
   PF12368.3 17 SeEEvaeRLea 27
                SeEE+ e ++ 
  MMETSP0890-20130614|6175_1 82 SEEEILEAFKV 92
                9****998875 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.053
   PF12368.3  15 nLSeEEvaeRL 25 
                 +L++EEv e L
  MMETSP0890-20130614|6175_1 116 KLTDEEVDEML 126
                 69*****9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.50u 0.44s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 510.08
//
Query:       MMETSP0890-20130614|6177_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-15   55.1   0.3    5.8e-15   54.7   0.2    1.2  1  PF00313.17 'Cold-shock' DNA-binding domain
    5.1e-05   22.6   0.0    0.00012   21.3   0.0    1.8  1  PF08206.6  Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.2   8.4e-19   5.8e-15       4      65 ..      63     123 ..      60     124 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 8.4e-19
                 -B----S..----B--------BB--TTT----T.TS------EEEEE--..-----BEEEEEE CS
  PF00313.17   4 tVkwfnakkgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevve..gekgpeAanVtk 65 
                 t +  n+ +gfGFI+++dg++d+FvH+s+i++ +   L+eG++V++ev+    +++  A+nV++
  MMETSP0890-20130614|6177_1  63 TACRWNT-RGFGFIKQDDGGEDLFVHVSEIKDGN--CLEEGNKVTYEVIYddTRQKYRAQNVQG 123
                 5555566.8************************9..************9876788999***985 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.8e-08   0.00012       6      30 ..      68      92 ..      64     119 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.8e-08
   PF08206.6  6 hkkGFGFvipDdgeeDifippeqmk 30
                + +GFGF+++Ddg+eD+f++ +++k
  MMETSP0890-20130614|6177_1 68 NTRGFGFIKQDDGGEDLFVHVSEIK 92
                789****************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 666.05
//
Query:       MMETSP0890-20130614|6178_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     5e-101  338.3   0.0    9.9e-87  291.1   0.3    2.3  2  PF11443.3  Domain of unknown function (DUF2828)
    2.8e-06   26.5   0.0    4.6e-06   25.8   0.0    1.3  1  PF05762.9  VWA domain containing CoxE-like protein
    0.00017   21.2   0.0     0.0004   20.0   0.0    1.6  1  PF00092.23 von Willebrand factor type A domain
     0.0063   16.0   0.0      0.012   15.1   0.0    1.5  1  PF13768.1  von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.017   15.1   0.2       0.22   11.5   0.0    2.7  2  PF13519.1  von Willebrand factor type A domain
      0.047   13.5   0.0       0.11   12.3   0.0    1.6  1  PF11516.3  Protein of unknown function (DUF3120)
      0.066   12.4   0.0       0.28   10.4   0.0    1.9  2  PF11775.3  Cobalamin biosynthesis protein CobT VWA domain
      0.076   12.9   2.5      0.067   13.1   0.5    1.8  2  PF07500.9  Transcription factor S-II (TFIIS), central domain


Domain annotation for each model (and alignments):
>> PF11443.3  Domain of unknown function (DUF2828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   2.6e-15   4.5e-12       2     101 ..      19     126 ..      18     141 .. 0.79
   2 !  291.1   0.3   5.8e-90   9.9e-87     155     526 ..     141     573 ..     130     574 .. 0.91

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 2.6e-15
   PF11443.3   2 engavtykts..gnacldlffkvvp.dteseelksll....eaaweedpel.alkivfnlRdvrtgkgeregfyaaalwlakehpktlalnvesvaefGywkDllell 101
                 eng+++y+++  g+a + lf+  v+ + + ++l++ +    ++  + +  +  + ++f+ Rd+r+gkgere fy+++  l +e pk   + +e+++e+GywkDl+++ 
  MMETSP0890-20130614|6178_1  19 ENGSPEYTAAgvGDARVALFAGCVRnSYNLDSLYNSVidlaKRTNDINVWVdLMTLIFHTRDCRGGKGERELFYRLFFLLYREFPKITLELLEKIPEYGYWKDLVNIW 126
                 79999999987789*******99994455555544430000333333332224789*************************************************996 PP

  == domain 2    score: 291.1 bits;  conditional E-value: 5.8e-90
   PF11443.3 155 ralhdtvaklfaeqLkkDlellesgkkekisLaAKWaPsekssadkatllaeaiarllfpreslklvreryRkevlvpLrkaLelvEvkmsarqwdkieYsrvpSvAmkrykklFlkhdeer.......................feeYledvkkGkakiaagallPheivksvlsgeeeaekv....aelqWktlvddlresgs..............lenviavcDvSgSmsgepmdvaiaLgllvselseepfkgkvitFsekpelheikgd.sLrekvkfvrkadwgmstnfqkvFdliLetAvenklkpedmikklfvfsDmeFdqastsksekweteyeaiqrkfkeaGYe.......vPelvfWnlagsask..kpvtsnkegvalvSGfSkellklfleaga.....................kevdPlsvllkav 526
                   + ++++kl+a+qL  D  +  +++++k+sL+AK+aP+e++++ k    a+a+a++++p++  +  r++yR+ ++v L  +L++ E+km+ ++w +i+ s vpS+++++ +k+Fl ++ +r                        ++ l d+   k+ i++++l+Ph++v+++ +++++ ++     +++qW++l  ++res                l n +a++DvSgSm+g+p++vaia+gl v+el++++f+++v+tF+++p++h i+++ +L ekv+ +++++wg+stnf ++ ++iLe  ++ klk +++++ l+vfsDm+Fd a+ ++  kwet+ye+ +r+f++aG         vP++ fWnl++ +++    + s+  gv l+SGfS +llkl+l++ +                     +  +P+s+++ka+
  MMETSP0890-20130614|6178_1 141 ESIRTAIVKLMAKQLLLD--S-VNDDLKKLSLCAKYAPRENKKFSKL---AKALAHEIYPND--TNHRQKYRQ-LIVSLNTKLSTTEIKMCGKRWREISISSVPSLCLAKTRKAFLNEKLKRqkpltgelavtgdrypddedrveCRQNLRDAVIKKKSIKGSQLFPHQLVHTIIKQHRSTSTLeddvMNAQWQNLIASVRESFAqvndsdianekkidLGNLVALVDVSGSMYGQPLEVAIAMGLVVAELAAPAFQNRVLTFESTPRWHRIESHhNLPEKVRALMRMPWGGSTNFAAALEMILESSIKHKLKSDQIPD-LIVFSDMQFDSANHGQG-KWETHYERLVRRFAQAGIAahgepwqVPTITFWNLRATRHGaaYMAESDRIGVRLLSGFSTSLLKLLLDGSSleeeseievvddqgnvtttktNGPTPYSTMRKAI 573
                 5678899********877..3.3577**************9988775...889*******95..5789*****.*********************************************9999**********************9999********************9999888777765546666999***9999998864333344455555677899**************************************************9999**************************************99885.99************999.*****************766666677***********99995566778889******************98689*****************99999********99 PP

>> PF05762.9  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.7e-09   4.6e-06      59     160 ..     353     458 ..     327     488 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.7e-09
   PF05762.9  59 rlvllvDvSgSmeay...savflallhallaqls.rtelfaFst..rltdltsalrerDpaeaLlrvsaavedlgGgTrigealaeflelvtrpal.rrav..vvivSDgl 160
                 +lv lvDvSgSm       a+++ l+ a la    + ++++F++  r  +++s+ +  + ++aL+r+      +gG T+ ++al+ +le+  ++ l ++ +  ++++SD++
  MMETSP0890-20130614|6178_1 353 NLVALVDVSGSMYGQpleVAIAMGLVVAELAAPAfQNRVLTFEStpRWHRIESHHNLPEKVRALMRMP-----WGGSTNFAAALEMILESSIKHKLkSDQIpdLIVFSDMQ 458
                 79**********8741112344444444444444999999998755789999988888**********.....****************9999999766555588888853 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.3e-07    0.0004       1     110 [.     353     454 ..     353     468 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.3e-07
                 EEEEEEE-STTS-HHHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEEE CS
  PF00092.23   1 DivfvlDgSgSigeenfekvkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvill 110
                 ++v ++D+SgS+ ++ +e +  +   + e         +  ++++ s++++  ++ ++++  e+ +a+ +++++ gg+tn ++AL+ +le+  +  +    ++p  +i++
  MMETSP0890-20130614|6178_1 353 NLVALVDVSGSMYGQPLEVAIAMGLVVAE---LAAPAFQNRVLTFESTPRW-HRIESHHNLPEKVRAL-MRMPW-GGSTNFAAALEMILESSIKH-KLKSDQIPD-LIVF 454
                 7999**********998888876666666...6****************75.589999999*******.9****.8**************97764.444444444.4445 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.2e-06     0.012       2     109 ..     353     459 ..     352     474 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.2e-06
   PF13768.1   2 evVivvDvsssmsgepvelvkdaLsailrsLpprd.kvnvvlfgtearplfpgsravssaelqellqkvkeleadlGasnlegaLkealrqp....akpgearhvlllsdgss 109
                 ++V +vDvs+sm g+p+e v+ a+ +++  L     +  v++f +++r+   +s  + +++ ++l    ++++   G++n ++aL+ +l++      k+ ++  ++++sd  +
  MMETSP0890-20130614|6178_1 353 NLVALVDVSGSMYGQPLE-VAIAMGLVVAELAAPAfQNRVLTFESTPRWHRIESHHNLPEKVRAL----MRMPW-GGSTNFAAALEMILESSikhkLKSDQIPDLIVFSDMQF 459
                 79*************955.45566666666665553889*********88899888888777666....55555.89999999999999865555556677777888888765 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.9   4.9e+03       9      41 ..     311     343 ..     309     344 .. 0.81
   2 ?   11.5   0.0   0.00013      0.22       1     109 [.     353     460 ..     353     489 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.9
   PF13519.1   9 SgSMnaedvsptrldaakaalkdlldelpgdrv 41 
                 S S+ ++dv    ++++ a++++ +++ +++++
  MMETSP0890-20130614|6178_1 311 STSTLEDDVMNAQWQNLIASVRESFAQVNDSDI 343
                 888899999888999999999999888877665 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00013
   PF13519.1   1 dlvlvlDvSgSMnaedvsptrldaakaalkdlldelpgd.rvglvafsgsael.vapltsdraalkaalnsldprlmpgggtnlaaalalalellakad...grraaivlvtD...G 109
                 +lv ++DvSgSM+ +      l++a a    + +    + +  + +f + ++  ++   +++++l +++ +l  r+ +gg+tn aaal+  le   k +   ++  ++++++D   +
  MMETSP0890-20130614|6178_1 353 NLVALVDVSGSMYGQ-----PLEVAIAMGLVVAELAAPAfQNRVLTFESTPRWhRI---ESHHNLPEKVRALM-RMPWGGSTNFAAALEMILESSIKHKlksDQIPDLIVFSDmqfD 460
                 7899*********99.....366666544444443333448889999988874233...66777888888888.57889*********99998775554445667899999994442 PP

>> PF11516.3  Protein of unknown function (DUF3120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.4e-05      0.11      66     103 ..     301     338 ..     259     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.4e-05
                 HHHHGGGT-----STTT-----SHHHHHHHHTTTT--- CS
   PF11516.3  66 leaqwakqhgtpptasdvvgmpqwqeytamlrerfagl 103
                 l     kqh +  t  d v   qwq+  a +re fa +
  MMETSP0890-20130614|6178_1 301 LVHTIIKQHRSTSTLEDDVMNAQWQNLIASVRESFAQV 338
                 555678*****************************976 PP

>> PF11775.3  Cobalamin biosynthesis protein CobT VWA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.92   1.6e+03     189     215 ..     113     141 ..     104     144 .. 0.79
   2 ?   10.4   0.0   0.00016      0.28      17      45 ..     356     383 ..     344     410 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.92
   PF11775.3 189 vtr..yykravlvvdveelGgavveklae 215
                 ++   y+k  v + d  el ++ v + ae
  MMETSP0890-20130614|6178_1 113 IPEygYWKDLVNIWDQVELQPSAVRENAE 141
                 5554599***************9998876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00016
   PF11775.3  17 llldlsGsmrGrkitlalasadiladale 45 
                  l+d sGsm G+++++a+a   ++a+ l 
  MMETSP0890-20130614|6178_1 356 ALVDVSGSMYGQPLEVAIAMGLVVAE-LA 383
                 689****************9999986.44 PP

>> PF07500.9  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   3.9e-05     0.067       3      64 ..     141     211 ..     139     254 .. 0.87
   2 ?   -2.4   0.0       2.5   4.3e+03       9      29 ..     277     297 ..     271     347 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-05
                 -HHHHHHHHHHHHHTTSS..SS-.............STTHHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHH CS
   PF07500.9   3 esvrdkcrellaaalakd..see.ke..........teeevdslaaeieeelfkeikntdkkYknkvRslifNLk 64 
                 es+r+ +++l+a++l  d  +++ k+          ++++  +la+++ +e++ +    d + ++k+R li++L 
  MMETSP0890-20130614|6178_1 141 ESIRTAIVKLMAKQLLLDsvNDDlKKlslcakyaprENKKFSKLAKALAHEIYPN----DTNHRQKYRQLIVSLN 211
                 799************99965555555*******9999999999999999999975....7999999999999987 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.5
                 HHHHHHHHTTSSSS-..STTH CS
   PF07500.9   9 crellaaalakdseeketeee 29 
                 cr+ l +a+ k+++ k ++  
  MMETSP0890-20130614|6178_1 277 CRQNLRDAVIKKKSIKGSQLF 297
                 555555555555433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:00.95
# Mc/sec: 1586.64
//
Query:       MMETSP0890-20130614|6179_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   20.5   0.4    0.00068   18.3   0.1    2.0  2  PF05686.7  Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.017   15.2   0.3        4.6    7.4   0.1    2.5  2  PF00042.17 Globin


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.13   9.1e+02      11      60 ..      19      64 ..      15      81 .. 0.71
   2 !   18.3   0.1   9.9e-08   0.00068     135     317 ..     132     354 ..     113     379 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.13
   PF05686.7 11 rvieeDLkpwretgitreaverakrkalfrlviingrvyvekykksvqtr 60
                r +++ L+ ++e  i ++ v+      + ++ +in+r++v    + +++r
  MMETSP0890-20130614|6179_1 19 RELDRSLNEFSEHLIFEDFVACE----KHFVLLINNRIFVSPNYENLGKR 64
                66777788888877777777665....456778999***98655555555 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 9.9e-08
   PF05686.7 135 nikrwslllkelkegnkkvkweerepyaywkGnpsvae.........tReeLlkcnrskkelvdarltkq..............................dekkeskegvkessledqckhkYk..iyie...GvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlt 317
                 n+ +w+ ++    e +++  +++r++ a w+G+ +  +         +R   l  + ++++l+da+ t +                              +e ++  +++++s+l ++    Y+  +++    G  +s  + +i + +s+v+l ++++ +++   L+  e  +  +     +++   ++ ++ ++  ++++  ++++  ++ ++ + + +Y    ++
  MMETSP0890-20130614|6179_1 132 NVTNWDIERSLYDEYSDRNAFKKRKARALWRGSIECFKncakdmgiwQRWGALVQSWKHPDLLDAKATPKhnealsirnvshidcepsglvvypdmvaayKELQKFPSAFQDSHLDHHKYVEYQflLNLAgskGGGYSRNLNHIWSLGSVVVLWDAHFTEWYFPALHDGETHITGDY----NNVIDTLKSVRRDPVMVEKLRTNARQIFETFISGEGLSNYVAAAFK 354
                 7899****************************9654331100112234666677889999*****9999999************************99887777788899999998876655551167652225679999**************************99998775444....5555555666888888888888888888888888888888766555 PP

>> PF00042.17  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0034        23      10      47 ..     209     247 ..     204     255 .. 0.80
   2 ?    7.4   0.1   0.00067       4.6      34      87 ..     332     381 ..     327     398 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0034
                 HHHCH.HHHHHHHHHHHHHHHHSGGGGGGGCCCTTTTHH CS
  PF00042.17  10 ekvka.naeeigaeilkrlfkaypdtkklFkkfgdlsae 47 
                 + v++ ++e  g+ ++  + +ay++++k+++ f+d++++
  MMETSP0890-20130614|6179_1 209 RNVSHiDCEPSGLVVYPDMVAAYKELQKFPSAFQDSHLD 247
                 556566888899999****************99995544 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00067
                 GGGGGCCC.TTTTHHHHHTSCHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH CS
  PF00042.17  34 tkklFkkf.gdlsaedlksspkfkahakkvlaaldeavknldnddnlkaalkklg 87 
                 ++++F+ f ++        s+ ++a  kk+ + ++++ k ld+  +l+++lk+lg
  MMETSP0890-20130614|6179_1 332 ARQIFETFiSG-E----GLSNYVAAAFKKLREKFHNVTKVLDDHLELNEHLKQLG 381
                 67888888555.3....4799999*****************9999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1264  (0.0924517); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.42s 00:00:01.38 Elapsed: 00:00:00.87
# Mc/sec: 1553.50
//
Query:       MMETSP0890-20130614|6180_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-12   46.8   0.0    8.3e-11   41.8   0.0    2.6  2  PF13361.1  UvrD-like helicase C-terminal domain
    5.4e-12   45.5   0.0    5.4e-12   45.5   0.0    2.4  2  PF00580.16 UvrD/REP helicase N-terminal domain
    2.9e-06   27.2   0.0    2.2e-05   24.4   0.0    2.3  2  PF13538.1  Family description
      9e-05   22.0   0.1       0.12   11.7   0.0    2.9  3  PF01443.13 Viral (Superfamily 1) RNA helicase
    9.7e-05   21.9   1.0    0.00028   20.4   0.7    1.7  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF13361.1  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.039   1.1e+02      62     105 ..     247     289 ..     186     297 .. 0.51
   2 !   41.8   0.0     3e-14   8.3e-11     178     315 ..     311     446 ..     283     450 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.039
                 HHHHHHHHC--GGGEEEEESSGHHHHHHHHHHHHTT--EEET-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1  62 ikkleekknisakdiavLvRsnrqarnleeaLkkagipyklvgq 105
                 + +  ++   + +  a+L+R+n+   +l+ +L+++gi   + g+
  MMETSP0890-20130614|6180_1 247 LANNPAT-AKPDETTAILCRTNAPLLALRGILLARGILSDMLGR 289
                 3332222.344556788999988888888888888886666655 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 3e-14
                 HHHHHHHHHHHTTHHHHHHHH..HHHHHHHHHH.HHHHHHHHHH.-HHCSSCCHHHHH.HHHHHCT-SS-STTS--TTGGGSEEEEECGGG----EEEEEETTTB----S-CCHH.CCHHHHHHHHHHHHHHHTTEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13361.1 178 lselvekiveetglkelltkd..eegeeklenl.rellellkelenknknseesLldf.leelslsseeeeeevilrtkkdaVkimTvHkaKGLEfpvVflsgleegtfpsersi.ekeenleeerRlfYVAiTRAkkqLylt 315
                  +e +e+ +++ ++  + + d  +   e+ +++ + + ++lk l  k++++ ++L +f ++ l+l s+++++    ++ k+ +++ T HkaKGLEf vV+l   e   +p +  + +   +  +e++l YV  TR+ ++L++ 
  MMETSP0890-20130614|6180_1 311 FEEALESYMRRNSMLGVENDDipQ---ESARDMvSCFKVILKLL--KESEDPKTLEQFkMKMLQLLSDDDTKGIPPDKRKKIITLATGHKAKGLEFSVVYLL--EPHLLPLQWVLdKGGWQARQELNLQYVCYTRSTNKLIFL 446
                 444455554444444444444331...22222213344555555..566788899999455678888888888677777788*******************8..88********966777888*****************976 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0     2e-15   5.4e-12     221     307 ..      87     174 ..      16     178 .. 0.76
   2 ?   -1.7   4.3      0.46   1.3e+03     168     227 ..     460     606 ..     294     614 .. 0.62

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 2e-15
                 HHHHHHHTC.....EECCHHHHHHHHHHHHSHHHHHHHHHHSSEEEESSGGG--HHHHHHHHHHHTTTTT..EEEE--GGG--GTT----TCHH CS
  PF00580.16 221 qeqkkeena.....lDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasghee..lfmvGDpkQsIYgFRgAdielf 307
                 +++ k++++     +Df+d +  +l++       a+ + ++ k++l+DE QDTn +   +l ++ +++++  l+ vGDp Q+IYgF gA+ + f
  MMETSP0890-20130614|6180_1  87 LHRTKKNKLiklpvVDFDDQIFMALAV------NAQLFTKKLKYLLVDECQDTNTARRFLLCRILEQNPQakLVAVGDPLQAIYGFAGANADAF 174
                 344444444566667888877777663......3567899**********************9999999999*****************99887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.46
                 C.......................................................................................HHHHHHHHGG-SHHH....HHHHHHHHTTSSTTHHTC--TS--HHHHHHHHHHHHHHHHHHHH CS
  PF00580.16 168 k.......................................................................................keelslskskaeelr....elvskakekqlspkelkkafekasdlqkkiaeflkeyqeqkkee 227
                 +                                                                                        + ++ +k+k+  l     +  +k ++ qls++e     ++a+ + k +++ l+ y+e+   +
  MMETSP0890-20130614|6180_1 460 RdklrqglfpdptstpsfsiprpeseaeeeeeedydpaifgesmhdvnxgedepsqdesatrntdddtvtslrmacaelridlinthlTKSEVRKKYKLRLLDvhpdKQAQKSPDTQLSEEES----NAATRRAKTAYDYLEGYLEKQASN 606
                 155555555555555555555555555555555555555555555566666666666666666666666666666666666666555544444444444444300113334444444444444....558899999999999999876654 PP

>> PF13538.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.1e-09   2.2e-05      25     103 ..     353     445 ..     323     446 .. 0.73
   2 ?   -0.7   0.0      0.51   1.4e+03      12      45 ..     492     525 ..     487     555 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 8.1e-09
   PF13538.1  25 eiedlaeeeeekedketvradd..eevkydvk..layaltihkaqGsefdaVvvpdpdaaafr..........elrrrllYtavTRAkeklvl 103
                 e ed++  e++k +  ++ +dd  + +++d++   +++ t hka+G+ef +V++  p + + +            + +l Y+  TR+  kl++
  MMETSP0890-20130614|6180_1 353 ESEDPKTLEQFKMKMLQLLSDDdtKGIPPDKRkkIITLATGHKAKGLEFSVVYLLEPHLLPLQwvldkggwqaRQELNLQYVCYTRSTNKLIF 445
                 4455555555554444444444553334444467999***********************7778899999977777777**********9986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.51
   PF13538.1  12 ndedkgllngslgeiedlaeeeeekedketvrad 45 
                 +d+d++++ +s+++++  ++e +++e++ + ++d
  MMETSP0890-20130614|6180_1 492 EDYDPAIFGESMHDVNXGEDEPSQDESATRNTDD 525
                 678889999******9999888765444443333 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.5e-05      0.12      55     137 ..     118     205 ..     101     233 .. 0.74
   2 !    6.9   0.0    0.0014       3.8     107     225 ..     308     446 ..     297     447 .. 0.69
   3 ?   -2.0   0.1      0.74     2e+03     124     167 ..     533     575 ..     518     592 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.5e-05
  PF01443.13  55 vkskgkililDEylllhaG..yill.laalssaklvilfGDplQ..ipfhsraasfllahlpsslshrvgrrttyllpslvaeilsak 137
                   +k k+l++DE++  +++   +l  ++ ++    ++++GDplQ  ++f   +a++  +  +s++ +r+  ++ y++ps  +++ ++ 
  MMETSP0890-20130614|6180_1 118 FTKKLKYLLVDECQDTNTArrFLLCrILEQNPQAKLVAVGDPLQaiYGFAGANADAFDRVPFSTVKERFFLSINYRCPSSHIDLANSI 205
                 4447899******9877651144446555555567999******44466667777777777788899999999*****9999998876 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0014
  PF01443.13 107 lahlpsslshrvgrrttyllpslvaeilsakgteveversgedvetepkgqekvlvyltftqalkealgvr...............vttvhevqGltfdkVtlvldketdlllis.........srenllvAlTRhrkslvil 225
                 l  ++  l+++ +r+ +    ++ ++++sa+  ++++ +++   +   +++ +  ++++f++++++ l+++                 t h + Gl+f++V l+  +  +l+ +          + +  +v+ TR++++l++l
  MMETSP0890-20130614|6180_1 308 LDEFEEALESYMRRNSMLGVENDDIPQESAR--DMVSCFKVIL-KLLKESE-DPKTLEQFKMKMLQLLSDDdtkgippdkrkkiitLATGHKAKGLEFSVVYLLEPHLLPLQWVLdkggwqarqELNLQYVCYTRSTNKLIFL 446
                 5556666666666666666667777777776..5556665666.2222222.35777778887777777778888888888898888899999999999999986655555544455777776688899***********986 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.74
  PF01443.13 124 yllpslvaeilsakgteveversged..vetepkgqekvlvyltft 167
                   +++l++++ + ++t++ev ++ +      + ++  k ++ ++ t
  MMETSP0890-20130614|6180_1 533 MACAELRIDLINTHLTKSEVRKKYKLrlL--DVHPD-KQAQKSPDT 575
                 56888888888888888888877776442..33333.233333333 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.7     1e-07   0.00028       9      55 ..     544     597 ..     542     605 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1e-07
                 -TT--HHHHHHHHHHHHHHT-TTT--SCC.......HHHHHHHHHHHHHHHHHT CS
  PF00226.26   9 pkdasdeeIkkaYrklalkyHPDknkdde.......eeaeekfkeineAyevLs 55 
                 +++ +++e++k+Y+   l +HPDk  +++       ee + + ++ ++Ay+ L+
  MMETSP0890-20130614|6180_1 544 NTHLTKSEVRKKYKLRLLDVHPDKQAQKSpdtqlseEESNAATRRAKTAYDYLE 597
                 56789*******************999999****99889999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.08u 0.39s 00:00:01.47 Elapsed: 00:00:00.78
# Mc/sec: 1910.94
//
Query:       MMETSP0890-20130614|6183_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3679  (0.26909); expected 273.4 (0.02)
Passed bias filter:                      754  (0.0551492); expected 273.4 (0.02)
Passed Vit filter:                       421  (0.0307929); expected 13.7 (0.001)
Passed Fwd filter:                       169  (0.012361); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.93u 0.52s 00:00:05.44 Elapsed: 00:00:02.31
# Mc/sec: 253.06
//
Query:       MMETSP0890-20130614|6182_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-40  137.4   1.5    1.6e-40  137.2   1.0    1.0  1  PF03297.10 S25 ribosomal protein
    0.00012   21.2   0.2    0.00017   20.8   0.1    1.3  1  PF13412.1  Winged helix-turn-helix DNA-binding
     0.0005   19.5   0.0    0.00067   19.1   0.0    1.1  1  PF12802.2  MarR family
     0.0017   17.9   0.1     0.0026   17.3   0.1    1.2  1  PF01047.17 MarR family
     0.0017   18.1   0.1     0.0024   17.6   0.0    1.2  1  PF01325.14 Iron dependent repressor, N-terminal DNA binding domain
     0.0075   16.4   0.0       0.01   16.0   0.0    1.3  1  PF13463.1  Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.029   13.9   0.0      0.038   13.5   0.0    1.2  1  PF01978.14 Sugar-specific transcriptional regulator TrmB
      0.072   12.4   0.1        0.1   11.9   0.0    1.3  1  PF00392.16 Bacterial regulatory proteins, gntR family
      0.079   12.6   0.0        0.1   12.3   0.0    1.2  1  PF12840.2  Helix-turn-helix domain
      0.089   12.5   0.1       0.14   11.9   0.0    1.4  1  PF10007.4  Uncharacterized protein conserved in archaea (DUF2250)


Domain annotation for each model (and alignments):
>> PF03297.10  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   1.0   1.1e-43   1.6e-40      14     104 ..       2      92 ..       1      93 [. 0.98

  Alignments for each domain:
  == domain 1    score: 137.2 bits;  conditional E-value: 1.1e-43
  PF03297.10  14 aaasaggkakkKkWskgkvkdklnnavlldkatydkllkevpkyklitpsvlsdrlkingslArkalkeLeekglikevvkhsaqkiYTra 104
                 aaa+aggk+kkKkWskgk+++k++n +l+d+ ty +ll+e+pk+klitps l++rlking+lAr+a+keLeekglik+v+ h++q iYTr 
  MMETSP0890-20130614|6182_1   2 AAAMAGGKSKKKKWSKGKTREKMANKILFDEDTYARLLSEIPKMKLITPSALVERLKINGALARAAIKELEEKGLIKMVSYHHTQWIYTRD 92 
                 799**************************************************************************************95 PP

>> PF13412.1  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.2e-07   0.00017      18      48 .]      48      78 ..      33      78 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.2e-07
   PF13412.1 18 isqreLAerlglSlgtvnrrlkrLeekGlIk 48
                i+ + L erl ++    ++ +k+LeekGlIk
  MMETSP0890-20130614|6182_1 48 ITPSALVERLKINGALARAAIKELEEKGLIK 78
                89999*************************8 PP

>> PF12802.2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.9e-07   0.00067       6      54 ..      34      80 ..      30      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.9e-07
                HHHHHHHHHTCS-...BE---HHHH----HHHHHHHHHHHHHTTSEEE- CS
   PF12802.2  6 aqarvLaaLgrrpgrdltvselarrlglsksavsrilkrLvaaGLverr 54
                + ar+L ++ +     +t+s l +rl +  + +  ++k+L+++GL+  +
  MMETSP0890-20130614|6182_1 34 TYARLLSEIPKMKL--ITPSALVERLKINGALARAAIKELEEKGLIKMV 80
                67888888888887..8*****************************865 PP

>> PF01047.17  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.9e-06    0.0026       7      48 ..      37      78 ..      33      80 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.9e-06
                HHHHHHHHSSCEEHHHHHHHCSS-HHHHHHHHHHHHHTTSEE CS
  PF01047.17  7 viLrilyesgplsvseLakklgvsrstvtrvldrLEkkGlie 48
                ++L  +  +  ++ s+L ++l+++ + +  ++++LE+kGli+
  MMETSP0890-20130614|6182_1 37 RLLSEIPKMKLITPSALVERLKINGALARAAIKELEEKGLIK 78
                567777777778888*************************96 PP

>> PF01325.14  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06    0.0024      21      59 ..      46      84 ..      38      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.8e-06
                ---BHHHHHHHCTS-HHHHHHHHHHHHHTTSEEE-TTSB CS
  PF01325.14 21 kvvktkdlAerLnvspstVsemlkkLekdGyveyekykg 59
                k ++++ l erL++ ++ +   +k+Le++G+++ ++y +
  MMETSP0890-20130614|6182_1 46 KLITPSALVERLKINGALARAAIKELEEKGLIKMVSYHH 84
                789999******************************987 PP

>> PF13463.1  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.4e-06      0.01      20      52 ..      49      81 ..      37      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 7.4e-06
   PF13463.1 20 tlaelskvlnidkstiseslkeLvekGllektg 52
                t ++l+++l+i  + +  ++keL ekGl+++ +
  MMETSP0890-20130614|6182_1 49 TPSALVERLKINGALARAAIKELEEKGLIKMVS 81
                5689*************************8765 PP

>> PF01978.14  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-05     0.038      13      55 ..      34      80 ..      30      90 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-05
  PF01978.14 13 vYlaLl....kkgpatadeiaeelgvprskvyevLrsLekkGlvere 55
                +Y+ Ll    k +  t + + e+l++  + ++ +++ Le+kGl++ +
  MMETSP0890-20130614|6182_1 34 TYARLLseipKMKLITPSALVERLKINGALARAAIKELEEKGLIKMV 80
                677777555566668999**************************986 PP

>> PF00392.16  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.3e-05       0.1      28      56 ..      51      79 ..      33      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.3e-05
  PF00392.16 28 reLaaefgVsrttvReALrrLeaeglver 56
                ++L+++++++    R A+++Le++gl+  
  MMETSP0890-20130614|6182_1 51 SALVERLKINGALARAAIKELEEKGLIKM 79
                789***********************975 PP

>> PF12840.2  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.4e-05       0.1      10      57 ..      33      80 ..      24      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.4e-05
                HHHHHHHHHH..H----HHHHHHHHT--HHHHHHHHHHH.H---EEE- CS
   PF12840.2 10 PvRrrilraLareegltaselaerldlpqstlsyHLrvLeeaGLieve 57
                 + +r+l+++++ +  t+s+l erl++  + ++  +++Lee GLi+ +
  MMETSP0890-20130614|6182_1 33 DTYARLLSEIPKMKLITPSALVERLKINGALARAAIKELEEKGLIKMV 80
                6667888888888889*****************************976 PP

>> PF10007.4  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.14       7      56 ..      32      81 ..      26      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0001
   PF10007.4  7 delalkilkhlkkanvdyaksiaketkipleevrellkkLeemGLlerve 56
                ++ + ++l  + k++   +  +++++ki+   +r ++k+Lee GL++ v+
  MMETSP0890-20130614|6182_1 32 EDTYARLLSEIPKMKLITPSALVERLKINGALARAAIKELEEKGLIKMVS 81
                56667788888888888889999***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.52
# Mc/sec: 442.40
//
Query:       MMETSP0890-20130614|6181_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-09   36.4  28.5    3.9e-09   35.8  19.8    1.3  1  PF05162.8  Ribosomal protein L41
    1.6e-06   27.2   0.0    2.1e-06   26.8   0.0    1.2  1  PF00240.18 Ubiquitin family
     0.0079   15.7   0.0      0.011   15.2   0.0    1.2  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like


Domain annotation for each model (and alignments):
>> PF05162.8  Ribosomal protein L41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8  19.8   8.5e-13   3.9e-09       1      25 []      90     114 .]      90     114 .] 0.98

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 8.5e-13
   PF05162.8   1 mrakWKkKRmRRLkrKRRKMRQRSK 25 
                 mr+kWKkKR+RRL+rKRRKMR R K
  MMETSP0890-20130614|6181_1  90 MRWKWKKKRTRRLQRKRRKMRARAK 114
                 9**********************98 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.6e-10   2.1e-06       6      66 ..      12      72 ..       7      74 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 4.6e-10
                E.EEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEE CS
  PF00240.18  6 k.titlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvl 66
                  t t++v+p  tv+ l e i+++e ip + qrL+   k L    tl++ ++++g+ + l l
  MMETSP0890-20130614|6181_1 12 EdTKTVDVDPALTVAGLRELIADEEFIPEELQRLVVGTKTL-TMGTLEDNGLEEGDSVQLLL 72
                34889************************************.8889**********998865 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.4e-06     0.011       2      71 ..       3      71 ..       2      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.4e-06
                EEEEEESSS-.-EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE CS
   PF11976.3  2 kivlkgkdgk.evkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvv 71
                ++++  ++g+ + +++V+p  t++ L e  ++++ ipe e +rL+   + L    t+ed ++e+gd ++++
  MMETSP0890-20130614|6181_1  3 QLFVNLPTGEdTKTVDVDPALTVAGLRELIADEEFIPE-ELQRLVVGTKTLT-MGTLEDNGLEEGDSVQLL 71
                788888999977889***********************.******9888886.67*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 496.70
//
Query:       MMETSP0890-20130614|6184_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-07   29.4   5.6     0.0029   17.2   0.0    2.5  3  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.059   13.2   0.3      0.068   13.0   0.2    1.1  1  PF02872.13 5'-nucleotidase, C-terminal domain
      0.095   11.6   1.2       0.11   11.4   0.8    1.1  1  PF04826.8  Armadillo-like
       0.17   11.6   0.7        0.2   11.4   0.5    1.2  1  PF13344.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.9   8.4e-06     0.029      19      41 .]       2      24 ..       1      24 [. 0.93
   2 !   17.2   0.0   8.6e-07    0.0029       1      29 [.      26      54 ..      26      58 .. 0.88
   3 ?   -2.3   0.0       1.2     4e+03       2      12 ..      63      73 ..      62      75 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.4e-06
                HHHC-SSHHHHHHHHHHHHHHHT CS
  PF00514.18 19 qLLksgdeevqeeAawALsNLaa 41
                +LL+sg    +e+Aa+AL+NLaa
  MMETSP0890-20130614|6184_1  2 ALLSSGTATAKENAAAALQNLAA 24
                5999*****************96 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 8.6e-07
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevq 29
                ++ n+ a+ +aGa++pL+ L +sg+   +
  MMETSP0890-20130614|6184_1 26 NDNNRIAIANAGAIRPLIILANSGNSTSK 54
                689*******************9887655 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.2
                HHHHHHHHHCH CS
  PF00514.18  2 penkqavieaG 12
                + n + +i+ +
  MMETSP0890-20130614|6184_1 63 NNNVKKIIKNN 73
                45566666555 PP

>> PF02872.13  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2     2e-05     0.068      30      70 ..      19      67 ..       4      72 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-05
  PF02872.13 30 aqreaagad...ialangggirad.....aGeitrgdvlailpfgntlv 70
                 q+ aa+ d   ia+an+g ir       +G+ t +++l+il  +n++ 
  MMETSP0890-20130614|6184_1 19 LQNLAANNDnnrIAIANAGAIRPLiilanSGNSTSKEALKILACNNNVK 67
                232222222444*********99445679*****************985 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   3.3e-05      0.11     141     211 ..       2      74 ..       1      78 [. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
   PF04826.8 141 sLLskGnektkvqvLkvllnlseNpamtreLl.sakvpssllslfnk.keakeillriltlfeninenlkkea 211
                 +LLs G  + k +    l nl++N+++ r  + +a +   l+ l n+ + +++  l+il+  +n+++ +k+++
  MMETSP0890-20130614|6184_1   2 ALLSSGTATAKENAAAALQNLAANNDNNRIAIaNAGAIRPLIILANSgNSTSKEALKILACNNNVKKIIKNNG 74 
                 5999*******************999999655278889999999887356677889**********9999876 PP

>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   5.9e-05       0.2      15      52 ..      11      61 ..       4      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.9e-05
   PF13344.1 15 aipgaaealkalraag.............kpvvllTNnsskseeeyakkle 52
                a ++aa al+ l a++              p+++l N+++++++e +k l 
  MMETSP0890-20130614|6184_1 11 AKENAAAALQNLAANNdnnriaianagaiRPLIILANSGNSTSKEALKILA 61
                56899***************************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 332.13
//
Query:       MMETSP0890-20130614|6188_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-35  118.3   1.2    1.1e-34  117.3   0.6    1.6  2  PF00240.18 Ubiquitin family
    1.5e-20   72.5   0.8    2.9e-20   71.6   0.6    1.5  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
    3.1e-17   61.9   1.3    6.6e-17   60.9   0.9    1.6  1  PF01599.14 Ribosomal protein S27a
    8.7e-05   22.1   0.6    0.00019   21.0   0.4    1.7  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
    0.00031   20.3   0.1    0.00072   19.1   0.0    1.6  2  PF13019.1  Telomere stability and silencing
     0.0023   18.0   0.6     0.0032   17.5   0.4    1.3  1  PF10302.4  DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
      0.014   15.2   0.2      0.026   14.3   0.0    1.6  2  PF11470.3  GLUT4 regulating protein TUG
      0.036   13.9   0.4      0.078   12.8   0.3    1.7  1  PF11069.3  Protein of unknown function (DUF2870)
      0.084   11.0   2.7          1    7.4   0.1    2.2  2  PF08337.7  Plexin cytoplasmic RasGAP domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.6   7.4e-38   1.1e-34       1      69 []       6      74 ..       6      74 .. 0.99
   2 ?   -2.2   0.0       1.5   2.3e+03      51      61 ..     103     114 ..     101     119 .. 0.71

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 7.4e-38
                EESSSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEESSS CS
  PF00240.18  1 ktlsgktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlrlr 69
                ktl+gktitl+vepsdt++++K+ki++kegip+dqqrLi++Gk+LeD+rtls+yniq++stlhlvlrlr
  MMETSP0890-20130614|6188_1  6 KTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                89*****************************************************************87 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.5
                 TTTTTT-TTE.E CS
  PF00240.18  51 lseyniqdgs.t 61 
                 l++y+++d+  +
  MMETSP0890-20130614|6188_1 103 LKYYKVDDDGkV 114
                 789999987634 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.6   1.9e-23   2.9e-20       1      72 []       1      71 [.       1      71 [. 0.99

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1.9e-23
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
   PF11976.3  1 ikivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+p++t+ +++++ ++k+gip+ +q+rLiF G++L++ +t+ d++i++++t+++v+
  MMETSP0890-20130614|6188_1  1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************996 PP

>> PF01599.14  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.9   4.4e-20   6.6e-17       2      47 .]     102     146 ..     101     146 .. 0.90

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 4.4e-20
  PF01599.14   2 vlkyYkvdeeGkverlrreCpnerCGa.GvFmAehkdRqyCGkCglt 47 
                 vlkyYkvd++Gkv+rlr+  p  + G+ G FmA+h dR+yCGk g t
  MMETSP0890-20130614|6188_1 102 VLKYYKVDDDGKVVRLRKYSP--TAGNtGCFMAQHSDRYYCGKTGHT 146
                 89*******************..666439**************9876 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.4   1.3e-07   0.00019      12     105 ..      10      90 ..       1      99 [. 0.73

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
                 --EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGGS--TTS-----EEEEEEE---SS----.--.------ CS
   PF13881.1  12 GkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkelrlplgevkggvtvmHvvvrealaekeeekk.kkkakk 105
                 Gk +  + +++++t++++k+k+     ++ke  p  +++ +li aGk Led +tL++++++ +      +++H+v+r     k+++kk  +k+kk
  MMETSP0890-20130614|6188_1  10 GK-TITLDVEPSDTIDNVKQKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLRLRGGGKKRKKKtYTKPKK 90 
                 66.5566778899999999998.....5677755..44559*****************66554......469****9887777666664555554 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.8e-07   0.00072       1      88 [.       1      76 [.       1      79 [. 0.86
   2 ?   -1.4   0.0      0.99   1.5e+03      54      83 ..      92     121 ..      78     133 .. 0.52

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.8e-07
   PF13019.1  1 invlvssldglslpktlsltlpstatvsdlvdklserlpaslteslvLtttsnkqlssssdlslssllsssedaeflslrlslrlcGG 88
                ++++v++l+g    kt++l ++++ t++++ +k++++ ++++++++++  +  kql  ++  +ls++  ++e+    +l+l+lrl+GG
  MMETSP0890-20130614|6188_1  1 MQIFVKTLTG----KTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIF-A-GKQL--EDGRTLSDYNIQKES----TLHLVLRLRGG 76
                69********....9**************************99865443.3.4566..788889999988888....99*******98 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.99
   PF13019.1  54 kqlssssdlslssllsssedaeflslrlsl 83 
                 k++ ++++l++ ++ + ++d +++ lr   
  MMETSP0890-20130614|6188_1  92 KHVRKKEKLRVLKYYKVDDDGKVVRLRKYS 121
                 334444444445555555555555555555 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.4   2.1e-06    0.0032      14      69 ..      13      84 ..       2     120 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-06
   PF10302.4 14 lrldinspnsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdlkee....................t 69
                ++ld++   s t+ + k+ i+++ +   +  + rlI+aGk L+d  +l++   ++                    t
  MMETSP0890-20130614|6188_1 13 ITLDVE--PSDTIDNVKQKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYNIQKestlhlvlrlrgggkkrkkkT 84
                566677..899***********9955554..4578*************9877666678887777666654332220 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.026       5      65 .]       9      69 ..       5      69 .. 0.90
   2 ?   -2.6   0.0       3.2   4.8e+03      25      33 ..     101     109 ..      80     117 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.7e-05
   PF11470.3  5 nfrrvkvkvtpsttltqVleeackkfkldsneytLkhnnkpldlslpfRlanLpngakLeL 65
                ++++ ++ v+ps+t+  V ++   k ++ +++ +L + +k+l+   ++   n+   + L L
  MMETSP0890-20130614|6188_1  9 TGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69
                68999*************************************9988888888888887765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.2
   PF11470.3  25 eackkfkld 33 
                 +++k++k+d
  MMETSP0890-20130614|6188_1 101 RVLKYYKVD 109
                 355566655 PP

>> PF11069.3  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   5.1e-05     0.078       3      47 ..      42      85 ..      40     124 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.1e-05
   PF11069.3  3 qLwfagkelkrgkklsdy.vGkNektkiivklqkkgegapsrepvi 47
                 L fagk+l+ g++lsdy + k     ++ +l  +g g   ++++ 
  MMETSP0890-20130614|6188_1 42 RLIFAGKQLEDGRTLSDYnIQKESTLHLVLRL--RGGGKKRKKKTY 85
                689***************88888888999888..444433333322 PP

>> PF08337.7  Plexin cytoplasmic RasGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2    0.0084        13     198     223 ..       7      32 ..       1      41 [. 0.83
   2 ?    7.4   0.1   0.00068         1     271     323 ..      54     106 ..      39     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0084
                 TTTS-SEEEEEETTSBHHHHHHHHHH CS
   PF08337.7 198 eeaeeavsvkvldcDtisqvkekvld 223
                   + +++++ v  +Dti  vk+k+ d
  MMETSP0890-20130614|6188_1   7 TLTGKTITLDVEPSDTIDNVKQKIQD 32 
                 55667899****************87 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00068
                 -BHHHHT--TT-EEEEEESX.XXXXXXXXXXXXXX.................. CS
   PF08337.7 271 ntlahYkvsdgatlalvkkvsesynssleksddssrerkdlleeaeesgvkvf 323
                  tl +Y+++  +tl+lv +     ++ ++k+ ++++++k++ ++++   +k++
  MMETSP0890-20130614|6188_1  54 RTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTKPKKVKHVRKKEKLRVLKYY 106
                 5999*************999988777777777777777776666555545555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       731  (0.0534669); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 687.84
//
Query:       MMETSP0890-20130614|6185_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.93
# Mc/sec: 1765.06
//
Query:       MMETSP0890-20130614|6186_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-252  837.2  32.1   4.5e-252  837.0  22.3    1.0  1  PF00183.13 Hsp90 protein
    3.4e-13   49.1   0.0    6.6e-13   48.2   0.0    1.5  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    3.3e-12   46.1   0.1    1.7e-11   43.8   0.1    2.3  1  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
  ------ inclusion threshold ------
        2.2    8.0  10.0         12    5.6   0.2    2.6  2  PF11801.3  Tom37 C-terminal domain


Domain annotation for each model (and alignments):
>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  837.0  22.3  1.3e-255  4.5e-252       1     531 []     185     710 .]     185     710 .] 0.94

  Alignments for each domain:
  == domain 1    score: 837.0 bits;  conditional E-value: 1.3e-255
                 GGGSHHHHHHHHHHHHTT-SS-EEEEEEE---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHCCCTTTSXXSEEEEEEEXXXXXEEEEEEEXSSXXSTTTXXX..XXXXXSXEEETTEEEESSXTTSSXGGGTTXEXEEEESSSXSSSXCCCCCTXHHHHHHHHHHHHHHHHHHHCCHTCHHHHHCHHHHHHHCCCXXXXSXCCCHHHHHTTXEEEETTEEEEEEEHHHHHHCSXTTXXEEEEEXXXXHHHHCCSCCHHHHHHTTXXEEEXXSCCHHHHHHCHSBXXXXEEEETTBX.XXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXXXXXXXXHHHHHHHHHHHXXTSXSSSSXXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHHHXXXXXSXTTTXXXHHHHHHTTTTHXXSTTTTTTGGGXGGGXXXXXX..XXXXXXXXXXXXX CS
  PF00183.13   1 eyleekklkelvkkhsefisypiklvvekevekevpdeeeeeekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteeellnktkpiWtrnpkdvteeeyaafyksltndwedplavkhfsveGqlefkallfvPkraPfdlfesk..kkknniklyvrrvfitddaedliPeylsfvkGvvdsedlPlnvsretlqqnkilkvirkklvkkalelikeiaedkedykkfyeefskniklGihedaanrkklakllrfestksedelvslkdyvtrmkeeqkkiyyitGeskkqvekspflerlkkknyevlyltdpvdeyaiqqlkefegkklvnvtkeGleleeseeekkkreelkeefeeltkllkeiledkvekvvvsnrlvdsPcvlvtskyGWsanmerimkaqalrdssksaymsskktleinPkhpiikelrkrveedkedksvkdlvvllyetallesGfsledpkefasrierliklglsidedeeveeeeeeeeaeekesa..eeeaeesemeevd 531
                 eylee++lk+lvkkhsef+++pikl+vek++ekev+d+++++e++   +eee  ++++k+e+++e e ++e  k +kk+ke+t+e++ ln +kpiW+r+p++vt+eeyaafyk+ltndwed+ avkhfsveGqlefk++lfvP+raPfd+fe    kk nniklyvrrvfi+d++edl+Pe+l+fvkG+vdsedlPln+sretlqqnkilkvi+k+lvkk++el++e+aed+++ykkfye+f kn+klG+hed++nr+klakllrf+stks++e +sl+dyv rm e+q  iy++tGesk++ve+spflerlkkk+yevl+++dp+dey++qqlke+egkkl + tkeGl++eese+ekk+ ee k+  e l+kl+ke+l+dkv+kvvvs rl+dsPcvlvt++yGWsanmerimkaqalrd+s saymsskktleinP +pi+k lr+++e+d+ dk+vkdl++lly+t+ll+sGfsle+p +fasri+rliklglsid+d+e    +  +++e+  +   ++ +ees+me+vd
  MMETSP0890-20130614|6186_1 185 EYLEERRLKDLVKKHSEFVGFPIKLYVEKTQEKEVTDDDDDDEEK--ADEEED-DDKPKVEDVDEAETKKEX-KNKKKIKEVTHEWDHLNGQKPIWMRKPEEVTQEEYAAFYKALTNDWEDHAAVKHFSVEGQLEFKSVLFVPRRAPFDMFEGGtkKKFNNIKLYVRRVFIMDNCEDLMPEFLTFVKGIVDSEDLPLNISRETLQQNKILKVIKKNLVKKSIELFNELAEDEDKYKKFYEAFNKNLKLGVHEDSTNRAKLAKLLRFHSTKSGEEQTSLDDYVARMSENQPGIYFVTGESKRAVESSPFLERLKKKGYEVLFMVDPMDEYCVQQLKEYEGKKLISATKEGLKMEESEDEKKEFEEAKAATEGLCKLIKEVLDDKVDKVVVSARLADSPCVLVTGEYGWSANMERIMKAQALRDASSSAYMSSKKTLEINPTNPIVKSLRDKAEADQSDKTVKDLIWLLYDTSLLTSGFSLEEPATFASRIHRLIKLGLSIDDDDED---D--ADMEDLPPLedDAIDEESSMEQVD 710
                 8*************************************9876444..334433.444666666666555544.56789**************************************************************************6433888******************************************************************************************************************************************************************************************************************************************************************************************************************************************************9764...3..333444443004446788999998 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.9e-16   6.6e-13       3     110 ..      29     181 ..      27     182 .. 0.94

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 1.9e-16
                 HHHHHHHHHHHHHHHHHHHHHH..........SEEEEEEEEECTCEEEEEEE-----TH...........HHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEEECTC........................T-CEEEEEEEEC CS
  PF02518.21   3 edrlrqivselvdNavkatees..........geievrvkreegelvieVeDnGiGipe...........edlervfepffqtdddsrkvggtGlGlsivkklvellggeieveske........................ggGttvtlrlpl 110
                 e +lr+++s++ d   k  ++s          + +e+++ +++ +++++++D+GiG+++           +   + f++  q+++d +++g++G+G++++ +++e++ ++ + ++ e                        g+Gt++ l+l+ 
  MMETSP0890-20130614|6186_1  29 EIFLRELISNASDALDKIRYQSltdasvldaePNLEIHIIPDKANNTLTITDTGIGMTKadlinnlgtiaKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVTSKHNDDEqytwessaggsftvtpdppeskrlGRGTRIVLTLKE 181
                 6789999999999999999999****************************************************************************************7777777999999999999999999999999999999999975 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   4.9e-15   1.7e-11       2     100 ..      26     148 ..      25     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 4.9e-15
   PF13589.1   2 sl.edAiaelvdNsldAdatn................vkisidedkkekseisieDnGkGmskeelvnal.klgrsskdeekeekt.......lGrkGiGmklAslklgrkvtviskkegeks.t 100
                 s+ e  + el+ N+ dA  +                 ++i+i  dk ++++++i+D G Gm+k++l+n+l ++++s +++  e+ +       +G++G+G  ++++ +++kv v+sk++++++ t
  MMETSP0890-20130614|6186_1  26 SNkEIFLRELISNASDALDKIryqsltdasvldaepnLEIHIIPDK-ANNTLTITDTGIGMTKADLINNLgTIAKSGTKAFMEALQagadismIGQFGVG-FYSAYLVAEKVVVTSKHNDDEQyT 148
                 66677899********875556677888888999999999999985.789******************6626777666644322224455566*******.9999************99887633 PP

>> PF11801.3  Tom37 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.8    0.0045        16      64     112 ..     216     264 ..     184     287 .. 0.57
   2 ?    5.6   0.2    0.0035        12      80     145 ..     515     579 ..     489     618 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0045
   PF11801.3  64 vavleseedeedeeddeseeaaevaqsklherqltakskekeelkeskn 112
                  +++++++d ++e+ de+e++++     + e +++++ k+k+++ke+  
  MMETSP0890-20130614|6186_1 216 EKEVTDDDDDDEEKADEEEDDDKPKVEDVDEAETKKEXKNKKKIKEVTH 264
                 2333344444444445555555555555555555556666666666544 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0035
   PF11801.3  80 eseeaaevaqsklherqltakskekeelkesknsle.cltlleelldekvefkflfsdskisssdlL 145
                 ++ e++++  + ++  ++++++ ek+e+ e+k+++e + +l++e+ld+kv  ++++ +++ + s ++
  MMETSP0890-20130614|6186_1 515 KEYEGKKLISATKEGLKMEESEDEKKEFEEAKAATEgLCKLIKEVLDDKV--DKVVVSARLADSPCV 579
                 555666666677777888889999******999987366889******94..444444434444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1257  (0.0919397); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.40s 00:00:01.59 Elapsed: 00:00:01.11
# Mc/sec: 1532.80
//
Query:       MMETSP0890-20130614|6190_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-26   91.7   0.1    3.4e-26   90.9   0.1    1.4  1  PF08512.7  Histone chaperone Rttp106-like
    1.1e-25   90.1   0.2    2.1e-25   89.2   0.1    1.5  1  PF03531.9  Structure-specific recognition protein (SSRP1)
    5.2e-16   58.5   1.9    5.2e-16   58.5   1.3    1.9  2  PF00505.14 HMG (high mobility group) box
    1.8e-11   44.1   0.8    6.3e-11   42.4   0.5    2.0  1  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
        9.2    4.0  36.3       0.15    9.9  11.7    2.2  2  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF08512.7  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.1   1.2e-29   3.4e-26       2      93 ..     135     235 ..     134     236 .. 0.96

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 1.2e-29
   PF08512.7   2 pgvkcsrkakeglLyplekgllfglkkpvlviplediesvefeRv....sssssrtfdlvvtlkd......egkelefsmIdkeeldvikeflkskgikikn 93 
                 ++v cs ka +g+Lyple++++f +++p+lv+++edi  vefeR     + s +r+fdl vt+k+      +++e+ f++I+++e++ + efl +k++kikn
  MMETSP0890-20130614|6190_1 135 HAVSCSVKARTGQLYPLERSFVF-IHQPTLVLRFEDIAAVEFERFsgygQGSATRNFDLRVTMKSsstdsgKNDEHVFTSIERTEYNILSEFLSNKNLKIKN 235
                 68*********************.************************9999***********9667788999***************************98 PP

>> PF03531.9  Structure-specific recognition protein (SSRP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.1   7.8e-29   2.1e-25     145     217 ..       3      75 ..       1      81 [. 0.95

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 7.8e-29
   PF03531.9 145 ltPrGrydielyetflrLrGktydykieyssvvrLfllPkkderqvffvisLdPPirqGqtrypylvlqfekd 217
                 l PrGry +e+y++f+r++G+ ydyki ys v r  llPk+d+ + +++i+Ld PirqGq ry +lv q+++ 
  MMETSP0890-20130614|6190_1   3 LLPRGRYGVEMYSSFFRMHGNMYDYKIAYSDVERYILLPKNDDIHYVLIIALDKPIRQGQQRYAFLVWQLKRS 75 
                 78******************************************************************99875 PP

>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.4       4.6   1.2e+04      14      24 ..     337     347 ..     330     349 .. 0.65
   2 !   58.5   1.3   1.9e-19   5.2e-16       2      69 .]     351     418 ..     350     418 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.6
                 HHHHHHHHHST CS
  PF00505.14  14 eqraklkaenP 24 
                 ++++k k++ P
  MMETSP0890-20130614|6190_1 337 KKKKKRKKKDP 347
                 45566666666 PP

  == domain 2    score: 58.5 bits;  conditional E-value: 1.9e-19
                 --S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
  PF00505.14   2 kRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                 k  +sa++ f++e+r+++k++ P+l++ +  k+lg+ Wk+l +e+K+pY++ ae++ ++ ++e +eYk
  MMETSP0890-20130614|6190_1 351 KGKTSAYIYFCNEKRPSIKEKDPSLSAPDTLKELGRLWKALDDEAKEPYKKLAEADAARWKSETEEYK 418
                 6679***************************************************************8 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.5   2.3e-14   6.3e-11       1      69 [.     347     413 ..     347     414 .. 0.95

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 2.3e-14
   PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                 p+ pk+k++AY +F  ++rp  k++ p  +    +  k+++  Wkal +e Ke+Y++ A +d +r ++e
  MMETSP0890-20130614|6190_1 347 PNAPKGKTSAYIYFCNEKRPSIKEKDPSLS--APDTLKELGRLWKALDDEAKEPYKKLAEADAARWKSE 413
                 899**************************6..99***************************99988776 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  11.7   5.6e-05      0.15     105     187 ..     237     336 ..     209     360 .. 0.50
   2 ?    0.1   7.9     0.051   1.4e+02     138     173 ..     405     440 ..     374     442 .] 0.45

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.6e-05
   PF02724.9 105 gdieeelekeeeerdayealvemkeeee.......eesdedsdseddeeeeessasekrksesdedeeddddeededee.qrkrsnessl...............a 187
                 ++ e+e       ++   +l ++++ ++       +  d++++++d   e++  +s+k+k + d+de+ddd+++d+++  q k++++  +               +
  MMETSP0890-20130614|6190_1 237 QTAETEQ------QQQLSNLLDDDDDDDddagadgSMLDSEEEDDDFVPEKPLPSSSKKKRKADDDESDDDESDDDEPViQTKKKKTVAKstssskqkrksaapdQ 336
                 3333332......233344444333333456775433333333333334444445555555555555555555555554044444443335555444444433321 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.051
   PF02724.9 138 dsdseddeeeeessasekrksesdedeeddddeede 173
                  +    ++e ee ++++k+++e++ede+dddd++de
  MMETSP0890-20130614|6190_1 405 ADAARWKSETEEYKKNRKEEEEEEEDEDDDDDDDDE 440
                 222223333333333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1559  (0.114029); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.54u 0.37s 00:00:01.91 Elapsed: 00:00:01.00
# Mc/sec: 1059.19
//
Query:       MMETSP0890-20130614|6191_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-37  125.9   2.0    4.2e-37  125.5   1.4    1.1  1  PF01198.14 Ribosomal protein L31e


Domain annotation for each model (and alignments):
>> PF01198.14  Ribosomal protein L31e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   1.4   3.1e-41   4.2e-37       2      82 ..      12      93 ..      11      94 .. 0.98

  Alignments for each domain:
  == domain 1    score: 125.5 bits;  conditional E-value: 3.1e-41
                EEEE....EE-GGG.GGS-GGGHHHHHHHHHHHHHHHHTTS-GEEE-HHHHHHHH-B---B--SEEEEEEEE-S--...--E CS
  PF01198.14  2 evvtreytinLrkv.kkvsfkkrAprAvkeirkfaakhmktedvridtklNkaiWsrGiekvPsrvrvrvsrkenededgke 82
                + vtr+yti ++k+ +++sfkkrAprA++ei+kfa+ hm+t dvrid++lNka+W++Gi++vP+r+rvr+srk+nede+++e
  MMETSP0890-20130614|6191_1 12 DLVTRDYTILMHKRlHGISFKKRAPRAIREIKKFAQMHMGTADVRIDARLNKAVWANGIRNVPHRLRVRLSRKRNEDEEAEE 93
                689****************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.50
# Mc/sec: 560.75
//
Query:       MMETSP0890-20130614|6192_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.5e-101  338.7   0.1   4.2e-101  338.0   0.1    1.3  1  PF01515.14 Phosphate acetyl/butaryl transferase
      7e-13   47.9   0.4    3.6e-10   39.2   0.0    3.4  3  PF07085.7  DRTGG domain


Domain annotation for each model (and alignments):
>> PF01515.14  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.0   0.1  6.1e-105  4.2e-101       2     319 .]     342     673 ..     341     673 .. 0.94

  Alignments for each domain:
  == domain 1    score: 338.0 bits;  conditional E-value: 6.1e-105
                 HHHHHHHHHHHS--EEEE--TTSHHHHHHHHHHHH--SSEEEE---HHHHHHHHHHTTB-..........-TT.SEE--TTT-TTH.HHHHHHHHHHCTT-.--HHHHHHHTT.SCCCHHHHHHH-------EE---S-HHHHHHHHHHCT-S-----S-EEEEEEE-T--EEEEE-SSS-SS--HHHHHHHHHHHHHHHHHCC.S--EEEEE-SS------SHHHHHHHHHHHHHHHH-TTSEEE-EE-HHHHH-HHHHHHH-..TTSS-----SEEE-SSST---HHHHHHHHHS--EEE-EEEE---S--EE------HHHHHHHHHHHH CS
  PF01515.14   2 lleriverakkkkkrIvlpegedervlkAakelleegladliLigneaeikakakeldld..........lsg.ieivdpeesekl.eeyadelyelrkrkgvtleeakeivr.datyfaamlVklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfvmlleerllffaDcavnvnPtaeelaeialnaaktakalgeieprvAlLSyStkgsakgesvekvrealkivkekepdlvvdGelqlDaAlseevaakka..pesevagkAnvlvfPdLeagnigykivqrlakaeaiGPilqGlakPvndlSrgasvedivnviaita 319
                 +++r++++a+++k +Ivlpeg+d rv+ Aa el+e+ l++++L+g++  i++ a e ++d           +  +ei+dp+ + +l  +++d l++ rk+kgvt++ a + +r d++y+++ml++lg aDg+vsGa ++ta t+rp lqiik k+gv++vSs+f+mll++++ +f+Dca+n+nP+a+ela+ia  +a+ta+a+g  eprvAlLSy t  s  g+ ++kvr+a+  ++e  p+   +G++q+DaA++++va  k+  +e +vagkAnv +fP+L++gn +yk+vq+ +k  a+GPi+qG++kPvndlSrg++ +divn++++ta
  MMETSP0890-20130614|6192_1 342 FQHRLFSKARSQKMTIVLPEGDDRRVVAAAGELVERALCKVVLLGDREAIRRLAIETRVDsalfpvlastTDPlFEIYDPQADTELrAKMVDGLFNARKHKGVTYDGALTLLReDPNYYGTMLLQLGLADGMVSGACHSTAATMRPPLQIIKMKSGVSIVSSIFFMLLQDGVKIFGDCAININPSADELATIACASAETARAFG-LEPRVALLSYATGDSNTGALIDKVRDATTKAREMLPNELFEGPIQFDAAVDPAVALVKFkgKENSVAGKANVCIFPSLDSGNSAYKAVQQASKCVAVGPIMQGMRKPVNDLSRGCTINDIVNTVVVTA 673
                 77899****************************************9999999888888872222222221234689*****9999878999*****************************************************************************************************************.******************************************************97766115699************************************************************997 PP

>> PF07085.7  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   5.2e-14   3.6e-10       1      72 [.     144     226 ..     144     229 .. 0.95
   2 !    4.2   0.0    0.0043        29      86     104 ..     264     282 ..     250     283 .. 0.84
   3 ?    0.1   0.0     0.078   5.3e+02      44      62 ..     382     400 ..     349     415 .. 0.62

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 5.2e-14
   PF07085.7   1 eiaealgaevlsggeellrr.vekvvigamsvenvleylke...gdlvitpgDRediqlaaleag.......laalilTggle 72 
                 eia al+a+vl g++ l+ +  ++vv++++ v++ le l++   g+l++t g R+d++la+++a+       +a+++l g+++
  MMETSP0890-20130614|6192_1 144 EIAYALNANVLLGRDLLSSQvAKGVVVATRYVPETLETLRNmepGQLLVTHGERTDLLLAVVMAQqspdfppVAGIVLSGSFN 226
                 7999****************999*************99998888***********************************9985 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0043
   PF07085.7  86 lpvlsteydtfttakrinq 104
                  pv+s++  t+++a+ +++
  MMETSP0890-20130614|6192_1 264 PPVISVDASTYEAASAVHE 282
                 59************99987 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.078
   PF07085.7  44 vitpgDRediqlaaleagl 62 
                 v+  gDRe i   a+e+ +
  MMETSP0890-20130614|6192_1 382 VVLLGDREAIRRLAIETRV 400
                 3444666666666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:01.12
# Mc/sec: 1469.91
//
Query:       MMETSP0890-20130614|6193_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.89
# Mc/sec: 778.14
//
Query:       MMETSP0890-20130614|6194_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-15   57.3   0.0    7.5e-14   51.9   0.0    2.9  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    8.6e-10   38.7   0.2    3.9e-09   36.6   0.1    2.2  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   1.1e-17   7.5e-14       2     197 ..      55     382 ..      54     385 .. 0.76

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 1.1e-17
                 EEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH....HHHHHHHHCTCEEEHCHEEEEEETTTTEE...........EEEEEEEEEEEETEEEEEEESEEEE----B----TGCCH.TEEEC.SSHHHHHHHHHHCST...............TT..EEEEE-............................................................................................................-GGGCHHSS--BESSSSBBE-TTSBC.......SSTTEEE---TCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...............xx..xxxxxx............................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
   PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreelee.lal....kvvdelekagieilleknvvkidsgskkv...........vqeagavkadekgkgrdikydklviAtGarprtlgipgv.evailargvedsdeilellek...............pk..kvvvvG............................................................................................................tkllaekagveldprggivVdeylrt.......svpgiyaiGDvae 197
                 +v++G+G++ ++++k ++ ++++++++  ++ + +++++++ +++ ++ e r+  e+ ++     ++            +e ++ +id+ +k+v              + ++  +++++ ++i+yd+lv+A+G + +   +pg+ ++++ ++ ved+ ++++ l++               ++  ++vv G                                                                                                              ll + +      +  + Vd++lr+        + +i a+GD+  
  MMETSP0890-20130614|6194_1  55 IVVLGSGWGSHAFIKVIDVRKYNCIVV--SPINHFCFTPMLPSAASGNVEYRSMTETvRRSnplvEY------------VEGSANDIDPVAKTVtvaltppekyqR--RNEEAFENDQELQTISYDQLVVACGVQVNDKIVPGAsKFCYRLKVVEDAVRLRRALSSrferaarspknsserKRllTFVVAGggptgvelagefsdfikdigrnfpginlddearvilvhsgsqllqqfdmpqreealralqaqgvevrlntrvgevfeehlvfqqnekkedipygiavwcagtapqpfmETLL-DRLPQSARAGRLVAVDDWLRVrlndssiELGSIMALGDCSR 382
                 8*****************99*******..77778999999999999998888777765555666633............333333333333333333333333332..22233334556999***********9988888***955*****************999*********99998544899*********************************************************999777777777777777777777777777666666666666666666666666642223.44444444477789999999988887666999999999975 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   5.7e-13   3.9e-09       2      66 ..     225     304 ..     224     316 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 5.7e-13
                 EEEE---HHHHHHHHHH......HHTT...........SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEETTEEEEEE CS
  PF00070.22   2 vvvvGGGyiGlElAaal......aklg...........kkVtvierrdrllraldeeiakilqkklekngievllntkveei 66 
                  vv GGG +G+ElA+++         g           ++V +++ +++ll+++d   +++  + l+++g+ev+lnt+v e+
  MMETSP0890-20130614|6194_1 225 FVVAGGGPTGVELAGEFsdfikdI--GrnfpginlddeARVILVHSGSQLLQQFDMPQREEALRALQAQGVEVRLNTRVGEV 304
                 59***************9999550..3444455555669****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.42s 00:00:01.27 Elapsed: 00:00:01.02
# Mc/sec: 1195.83
//
Query:       MMETSP0890-20130614|6195_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1931  (0.141238); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:00.72
# Mc/sec: 795.46
//
Query:       MMETSP0890-20130614|6196_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-10   38.8   0.3    9.4e-10   38.1   0.0    1.4  2  PF02290.10 Signal recognition particle 14kD protein


Domain annotation for each model (and alignments):
>> PF02290.10  Signal recognition particle 14kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   6.8e-14   9.4e-10      50      93 .]       8      50 ..       2      50 .. 0.92
   2 ?   -2.6   0.0      0.34   4.7e+03      61      70 ..      55      64 ..      51      72 .. 0.58

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 6.8e-14
  PF02290.10 50 seykiLiRatdgkkvKiSTvVkaedlekFlasYaevlkasmtgl 93
                 ++++LiRa+  kk KiST+ +a+d+ +F++s  +vlk + t+l
  MMETSP0890-20130614|6196_1  8 PTNRCLIRAKTEKK-KISTILEAKDVLRFHTSLTNVLKVQATNL 50
                6789**********.***********************999886 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.34
  PF02290.10 61 gkkvKiSTvV 70
                ++k K +T V
  MMETSP0890-20130614|6196_1 55 RSKAKKATEV 64
                3444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 314.52
//
Query:       MMETSP0890-20130614|6197_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-05   23.0  11.4    5.2e-05   23.0   7.9    2.1  2  PF02135.11 TAZ zinc finger
  ------ inclusion threshold ------
      0.043   13.4   0.4       0.16   11.6   0.1    2.0  1  PF10737.4  Spore germination protein GerPC
        0.1   12.1   0.1        0.1   12.1   0.0    2.2  2  PF01155.14 Hydrogenase expression/synthesis hypA family


Domain annotation for each model (and alignments):
>> PF02135.11  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.2   5.7e+03      38      58 ..     304     311 ..     298     335 .. 0.57
   2 !   23.0   7.9   1.1e-08   5.2e-05       5      74 ..     549     622 ..     545     623 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.2
  PF02135.11  38 HlksCkkkkckvgrCasskql 58 
                 H             Cas+ ++
  MMETSP0890-20130614|6197_1 304 H-------------CASCGEM 311
                 4.............4444433 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.1e-08
  PF02135.11   5 eqlelLlHakkCkkreeakCklkaCkklkkllkHlksCkk.....kkckvgrCasskqlikHakeCkdseCpvcl 74 
                  +l l+ Ha++C  ++ ++ +   C  +k ++ H+++C+      ++c ++ C+  k++++H+ +C d +Cpvc+
  MMETSP0890-20130614|6197_1 549 ALLDLFHHARHCPGKHVSRKHADICLAAKYVMLHVRDCQGtlpcgENCPFAWCKALKRFLRHVLQCVD-QCPVCT 622
                 678999********99999999****************96233324599999**************98.6****7 PP

>> PF10737.4  Spore germination protein GerPC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.5e-05      0.16      80     128 ..      67     113 ..      18     140 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.5e-05
   PF10737.4  80 lvqqirekveaylekelpelleeleqqyessldesyrqfiieDikkqld 128
                 +  +  ek eaylek +  + + le+q++s +des+ + ++ D +k   
  MMETSP0890-20130614|6197_1  67 I--EALEKFEAYLEKTILPVKRRLEKQLSSAVDESNAEKMLSDERKRKR 113
                 3..34789***********************************998755 PP

>> PF01155.14  Hydrogenase expression/synthesis hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.3e-05       0.1      58      97 ..     290     339 ..     271     351 .. 0.88
   2 ?   -3.2   1.9       1.3   5.9e+03      88      98 ..     608     627 ..     555     637 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.3e-05
                 SS--EEE-----EEE-SSSS-EE-S--S---..........-SSSSS--- CS
  PF01155.14  58 egaeLeieevpvsvrCreCgeeveleerale..........CpkCgsadv 97 
                 + a +++  ++v++ C +Cge ++ ++++l           CpkC++ ++
  MMETSP0890-20130614|6197_1 290 RRASIQVLPKKVEYHCASCGEMYTSKSSSLYnpwwslvrqaCPKCEEPQF 339
                 5688999999******************97779************99876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.3
                 -.........-SSSSS---E CS
  PF01155.14  88 e.........CpkCgsadve 98 
                           Cp C + + +
  MMETSP0890-20130614|6197_1 608 LrhvlqcvdqCPVCTADAHR 627
                 13455555559999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.38s 00:00:01.46 Elapsed: 00:00:01.17
# Mc/sec: 1468.54
//
Query:       MMETSP0890-20130614|6201_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-32  111.0   0.0    5.7e-31  107.5   0.0    2.1  1  PF00069.20 Protein kinase domain
    2.2e-25   89.1   0.0    1.8e-16   59.9   0.0    2.1  2  PF07714.12 Protein tyrosine kinase
      0.002   17.8   0.2     0.0079   15.8   0.1    1.7  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   1.2e-34   5.7e-31       5     202 ..     170     420 ..     167     429 .. 0.90

  Alignments for each domain:
  == domain 1    score: 107.5 bits;  conditional E-value: 1.2e-34
                 EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH...............HHCCB-HHHHHHHHHHHHHHHHHHHHT......CEE-S--SGGGEEEETT--EEE------EEE...................................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST CS
  PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk...............kegklseeeikkialqilegleylHsn......giiHrDLKpeNiLldkkgelkiaDFGlakkl...................................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge 202
                 +++G+Gs + +y  ++ +    +A+K+l+ e ++++ e ++++ E+++l++l Hpni +++++   k+  + +le+++ + + + l+                ++++      +++ q++++++ylHs        ++HrD+Kp+N+ + ++++lk+ DFGla++l                                   ++   +ltt +g+++YmA Ev + +++y+ k+D++s++++ +e+l    p+ g 
  MMETSP0890-20130614|6201_1 170 HQVGKGSQAIIYATSHDHVL--MALKVLRPELASDEIEHETFErEVNLLARLAHPNINSVFGIGLYKSMPCALLEWCPSD-ITRTLRlrqvdadhstktrtaVKKQFPASRRLQFIFQLASAMAYLHSGhalprcFVLHRDIKPDNLGVAEDNSLKLLDFGLACCLssddseveamlgadatkgnglgssldttiirrgkaYHAVYDLTTATGSPRYMANEVGR-GRKYGLKADIYSFAIVSWEILILARPYGGL 420
                 789**********9999986..9********9888887776656**********************************96.44444445555566666667788999*********************87999999*****************************9********************************998888889*****************.*******************99877777665 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.9e-20   1.8e-16       6     159 ..     171     338 ..     163     347 .. 0.85
   2 !   27.0   0.0   4.2e-10   1.9e-06     162     214 ..     374     425 ..     358     429 .. 0.83

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 3.9e-20
                 EE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT.............GTTGSBHHHHHHHHHHHHHHHHHHHHTT......EEEST-SGGGEEEETTTEEEE-----CEESTTTSCE CS
  PF07714.12   6 klGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk.............ekekltlkdllkfalqiakGmeyLeskk......lvHrdLaarNvLleeekvvkisDfGLardiekddyy 159
                 ++G+G+ + ++        ++++v  a+K+l+    ++e e+e f +e++++ +l hpni ++ g+ + ++  + ++e+++  d+ + Lr +              k+++  ++ l+f++q+a++m+yL+s +      ++Hrd+   N  ++e++  k+ DfGLa  + +dd+ 
  MMETSP0890-20130614|6201_1 171 QVGKGSQAIIYAT------SHDHVLMALKVLRPelASDEIEHETFEREVNLLARLAHPNINSVFGIGLYKSMPCALLEWCPS-DITRTLRLRqvdadhstktrtaVKKQFPASRRLQFIFQLASAMAYLHSGHalprcfVLHRDIKPDNLGVAEDNSLKLLDFGLACCLSSDDSE 338
                 4555555555544......445999******772345555699*************************88888*******96.78888887788**********999************************9877777678*************************988766655 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 4.2e-10
                 STT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHH CS
  PF07714.12 162 keeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneev 214
                  ++a+ + ++ma E+ + +k+  k+D++sf ++ wEi+ l+ +py gls++++
  MMETSP0890-20130614|6201_1 374 LTTATGSPRYMANEVGRGRKYGLKADIYSFAIVSWEILILA-RPYGGLSPNDL 425
                 456667889******************************88.9**99998876 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.24   1.1e+03      32      52 ..     204     224 ..     170     251 .. 0.68
   2 !   15.8   0.1   1.7e-06    0.0079     128     196 ..     260     330 ..     236     331 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.24
                 CHHHHHHHHHHHHHHHCCSSS CS
  PF01636.18  32 raaeelrrevallrlLakagi 52 
                   +e ++rev ll++La  +i
  MMETSP0890-20130614|6201_1 204 IEHETFEREVNLLARLAHPNI 224
                 568889999999999986555 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHCTHH.HHHHHHHHHHHHHHHHHHC..SS--EEB.-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 128 llesataalvaselle.lleeleervlaalaallpg..aeppvll.HgDlhpgNllvdpddgrvgviDfedag 196
                 ++  +t+  v+ +++  +++++  +++ a+a l  +  a+p++++ H+D++p+Nl v  +d+ + ++Df++a+
  MMETSP0890-20130614|6201_1 260 DHSTKTRTAVKKQFPAsRRLQFIFQLASAMAYLH-SghALPRCFVlHRDIKPDNLGVA-EDNSLKLLDFGLAC 330
                 3333333444444444555555554333333333.24769999877************.555555*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.57
# Mc/sec: 656.33
//
Query:       MMETSP0890-20130614|6199_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:01.93
# Mc/sec: 867.90
//
Query:       MMETSP0890-20130614|6203_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-13   49.4   0.1    3.2e-12   46.2   0.0    2.2  2  PF09445.5  RNA cap guanine-N2 methyltransferase
    1.7e-05   25.2   0.0    6.5e-05   23.3   0.0    1.9  2  PF12847.2  Methyltransferase domain
    0.00036   19.8   0.0    0.00064   19.0   0.0    1.5  1  PF03602.10 Conserved hypothetical protein 95
     0.0012   17.8   0.0     0.0017   17.3   0.0    1.2  1  PF00398.15 Ribosomal RNA adenine dimethylase
     0.0033   16.6   0.0     0.0058   15.8   0.0    1.3  1  PF04989.7  Cephalosporin hydroxylase
     0.0037   17.1   2.0     0.0053   16.6   0.0    2.1  2  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   15.5   0.1      0.079   13.2   0.0    2.1  2  PF13649.1  Methyltransferase domain
      0.032   13.7   0.0      0.055   12.9   0.0    1.4  1  PF02475.11 Met-10+ like-protein
      0.042   12.8   0.0      0.074   12.0   0.0    1.4  1  PF04445.8  Putative SAM-dependent methyltransferase
       0.08   11.7   0.0       0.17   10.6   0.0    1.5  1  PF01564.12 Spermine/spermidine synthase
      0.082   12.9   0.2       0.17   11.9   0.1    1.5  1  PF08227.6  DASH complex subunit Hsk3 like


Domain annotation for each model (and alignments):
>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.25   3.1e+02      22      58 ..      36      72 ..      29     113 .. 0.78
   2 !   46.2   0.0   2.5e-15   3.2e-12       3      80 ..     209     290 .]     207     290 .] 0.88

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.25
   PF09445.5 22 fdkviaieinlsklklaqhNa.evYgvsdkitlvlgdv 58
                f ++  ++ ++++ k+a  Na + Y  +d+i  + +  
  MMETSP0890-20130614|6203_1 36 F-RILHCDEEETRWKMAILNAaRDYLDNDQIVAIRCRR 72
                5.788899999999999888526787799999998865 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 2.5e-15
   PF09445.5   3 vvlDlfaGaGGnviqfanvfdkviaieinlsklklaqhNaevYgv...sdkitlvlgdvfellaklkleei.vdlvflSpPw 80 
                 +++D+ a +GGn+++fa+ fd+via ei+ +k+++ +hN           ++++ +gd+ ell ++ ++ +   lvf+ pPw
  MMETSP0890-20130614|6203_1 209 TIIDATACVGGNTVAFARRFDHVIAFEIDAEKIRMLKHNLTHVRQhlsITQVQIHHGDCLELLPNILTKVTaPVLVFADPPW 290
                 79*************************************8655431125788999**********9999888899******9 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.3   2.9e+03      71     107 ..      36      66 ..      11      84 .. 0.60
   2 !   23.3   0.0   5.2e-08   6.5e-05       3      70 ..     208     277 ..     206     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.3
   PF12847.2  71 fDavllkg.ltldallaldeprrvlealpkllkpggrl 107
                 f ++ +++  t +  +a+      l+a+++ l ++ ++
  MMETSP0890-20130614|6203_1  36 FRILHCDEeETRW-KMAI------LNAARDYLDNDQIV 66 
                 4444444433333.4444......55555555555554 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 5.2e-08
   PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarena...ksldle...eriellqgda.keelsller 70 
                  +i+D  +++G  ++++ar  +  +v+++++++e +++++ n+   +   ++   +++++++gd+ +  +++l++
  MMETSP0890-20130614|6203_1 208 TTIIDATACVGGNTVAFAR--RFDHVIAFEIDAEKIRMLKHNLthvR---QHlsiTQVQIHHGDClELLPNILTK 277
                 5799***************..9999******************5542...333349999******7777776665 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.1e-07   0.00064      45     124 ..     209     290 .]     176     290 .] 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 5.1e-07
  PF03602.10  45 rvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealklee...evavlredaaeallklakkkeefdlvflDPPY 124
                 +++D  a  G+  + A  R  ++v+++e d++ +++lk+nl++++ +    +v+++  d  e l++   k     lvf+DPP+
  MMETSP0890-20130614|6203_1 209 TIIDATACVGGNTV-AFARRFDHVIAFEIDAEKIRMLKHNLTHVRQHLsitQVQIHHGDCLELLPNILTKVTAPVLVFADPPW 290
                 56666666666655.899**************************9776887888888899999998877777778*******6 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0017      30      87 ..     206     269 ..     188     289 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.4e-06
  PF00398.15  30 ekdtvlEigpGkGalTeeLakrakqvvalEidsklvkrlqkkla......kdenvevvhqDflk 87 
                 + +t+++  +  G  T+++a+r+++v a+Eid + ++ l+++l+      + ++v++ h+D l+
  MMETSP0890-20130614|6203_1 206 KPTTIIDATACVGGNTVAFARRFDHVIAFEIDAEKIRMLKHNLThvrqhlSITQVQIHHGDCLE 269
                 6689*************************************99998877777889999999886 PP

>> PF04989.7  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.6e-06    0.0058      22      96 ..     196     269 ..     189     284 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.6e-06
   PF04989.7  22 vayqellwelkPdliiEtGiahGGSllflasllelleekgkVlgiDidirehnreaieahplakrieliqgssvd 96 
                 + +  +  e kP +ii+   + GG  + +a   +++   +++ +  i++ +hn +++++h    ++++++g++++
  MMETSP0890-20130614|6203_1 196 AKISTICAECKPTTIIDATACVGGNTVAFARRFDHV-IAFEIDAEKIRMLKHNLTHVRQHLSITQVQIHHGDCLE 269
                 56778999*************************999.999********************************986 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.93   1.2e+03      23      48 ..      62      79 ..      50     182 .. 0.50
   2 !   16.6   0.0   4.2e-06    0.0053       3      80 ..     209     290 .]     207     290 .] 0.75

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.93
   PF13659.1 23 aalllgvEldpraaalaarnlaragl 48
                +++++++ + ++aa+        +g+
  MMETSP0890-20130614|6203_1 62 NDQIVAIRCRREAAE--------NGW 79
                444444444444332........222 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 4.2e-06
   PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlar....aglaervrvrqgdlrdlaellra..gsfdlvvtnpPy 80 
                 +++d ++  G  ++a++++  ++++++E+d++ +++ ++nl++     ++  +v++++gd ++l + + +   +  lv+++pP+
  MMETSP0890-20130614|6203_1 209 TIIDATACVGGNTVAFARRF-DHVIAFEIDAEKIRMLKHNLTHvrqhLSI-TQVQIHHGDCLELLPNILTkvTAPVLVFADPPW 290
                 57777777777788888899.9****************998884443333.369******988865444323567788888885 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   1.6e+03      59      88 ..      39      67 ..      11      77 .. 0.64
   2 ?   13.2   0.0   6.3e-05     0.079       2      62 ..     211     271 ..     210     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.3
   PF13649.1 59 ralpfeegefdlvvcaglslehlspkqlea 88
                 ++++ee ++++ ++ ++  ++l+++q++a
  MMETSP0890-20130614|6203_1 39 LHCDEEETRWKMAIL-NAARDYLDNDQIVA 67
                334445555555555.45578899888886 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.3e-05
   PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss..kgl...kvkfvqadaralp 62 
                 +d+  + G ++ a++r++     ++vi+ +i++e ++  k++l+   ++l   +v+ +++d+ +l 
  MMETSP0890-20130614|6203_1 211 IDATACVGGNTVAFARRF-----DHVIAFEIDAEKIRMLKHNLTHvrQHLsitQVQIHHGDCLELL 271
                 566666777889999999.....9****************88877654447889999*****8874 PP

>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.4e-05     0.055      85     165 ..     188     271 ..     177     286 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.4e-05
                 -TT----HHHHHTT--T..T-EEEETT-----HHHHTT...TSSEEEEEES-HHHHHHHHHHHHHT..T-T.TTEEEEES-GGG-. CS
  PF02475.11  85 ssrleaErerlaklvee..gevvvdvfAGvgpfaipiakyskaklvlavdlnpeavkylkeniklN..kve.kvvkpileDvrevi 165
                 s  +e+  +++ +++ e    +++d  A vg  +++ a+  + + v+a +++ e +++lk+n +    +++   v++ ++D+ e++
  MMETSP0890-20130614|6203_1 188 SVSNETTAAKISTICAEckPTTIIDATACVGGNTVAFAR--RFDHVIAFEIDAEKIRMLKHNLTHVrqHLSiTQVQIHHGDCLELL 271
                 555555556665554331135899**************9..9999*****************875411332234555566666665 PP

>> PF04445.8  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     6e-05     0.074      64     159 ..     194     288 ..     185     290 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6e-05
                 HHHHH----------.EEETT-----HHHHHHH----EEEEE--HHHHHHHH---------S-----HHHHEEEEES-TTTSST...T-SS--SEEEE-- CS
   PF04445.8  64 aiakavGikksvlPt.vlDataGLGrDafvlaslGckvrlverhPvvaaLLeDGlqrayqdkeiGealqerlkLlvassleale...kalekpdvvYLDP 159
                 + ak++ i  + +Pt ++Data +G ++  +a    +v+++e +     +L+  l+  +q   i     +++++++++ le l    +++++p +v+ DP
  MMETSP0890-20130614|6203_1 194 TAAKISTICAECKPTtIIDATACVGGNTVAFARRFDHVIAFEIDAEKIRMLKHNLTHVRQHLSI-----TQVQIHHGDCLELLPnilTKVTAPVLVFADP 288
                 568999999999995499****************************99************9999.....7889999***999997777888899999998 PP

>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014      0.17      96     148 ..     224     276 ..     216     288 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
                 TSTT-SEEEEEES-HHHHHHHHHH-HHHH--TT-TTEEEEE----HHHHTCSS CS
  PF01564.12  96 khntvekitlvdiDqkvidfsrkflpslaislndervkvvigdgfkflkaylv 148
                 +   + +++  +iD + i + + +l ++   l+ ++v+++ gd+ ++l ++l 
  MMETSP0890-20130614|6203_1 224 FARRFDHVIAFEIDAEKIRMLKHNLTHVRQHLSITQVQIHHGDCLELLPNILT 276
                 55567899999************************************998876 PP

>> PF08227.6  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014      0.17       9      33 ..     239     263 ..     238     268 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
   PF08227.6   9 sqLaqLqaNLadteelLettsiQae 33 
                 ++++ L +NL +  ++L +t +Q +
  MMETSP0890-20130614|6203_1 239 EKIRMLKHNLTHVRQHLSITQVQIH 263
                 7899*****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.62
# Mc/sec: 1120.88
//
Query:       MMETSP0890-20130614|6204_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-16   58.3   7.0    1.1e-15   56.9   4.8    1.8  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    1.5e-09   37.4   7.1    1.5e-09   37.4   4.9    1.9  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    4.5e-06   26.1   8.7    5.1e-06   26.0   4.7    2.1  2  PF13639.1  Ring finger domain
    5.1e-05   22.7  10.6    0.00012   21.5   7.4    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0043   16.8   2.4       0.61    9.9   0.0    2.7  2  PF01166.13 TSC-22/dip/bun family
     0.0043   16.7   1.9      0.013   15.1   1.2    1.9  2  PF05812.7  Herpesvirus BLRF2 protein
     0.0046   17.3   0.8     0.0068   16.8   0.1    1.6  1  PF02670.11 1-deoxy-D-xylulose 5-phosphate reductoisomerase
     0.0055   16.1   4.7      0.017   14.5   3.3    1.8  1  PF14447.1  Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.039   13.9   2.8       0.38   10.8   0.4    2.2  2  PF05837.7  Centromere protein H (CENP-H)
      0.042   13.2   6.4       0.26   10.6   0.1    2.5  2  PF04977.10 Septum formation initiator
      0.053   13.6   0.2        0.1   12.7   0.1    1.4  1  PF11011.3  Protein of unknown function (DUF2849)
       0.07   11.2   0.2       0.11   10.6   0.1    1.2  1  PF11885.3  Protein of unknown function (DUF3405)
      0.095   12.6   2.1        3.3    7.6   0.1    2.4  2  PF03980.9  Nnf1
       0.39   10.6   4.1         11    5.9   1.3    2.3  2  PF00170.16 bZIP transcription factor
       0.57    9.5   8.3       0.17   11.2   3.2    2.1  2  PF03854.9  P-11 zinc finger
       0.73    9.5   8.5       0.24   11.1   0.3    2.3  2  PF07716.10 Basic region leucine zipper
        1.9    8.1   5.4        5.6    6.6   3.8    1.8  1  PF10571.4  Uncharacterised protein family UPF0547
        2.6    7.8   7.0         16    5.2   4.9    2.3  2  PF12773.2  Double zinc ribbon
        2.6    8.2   6.9         14    5.9   0.1    2.3  2  PF06156.8  Protein of unknown function (DUF972)
        8.3    6.5   9.6        4.1    7.4   3.9    2.6  1  PF12678.2  RING-H2 zinc finger


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   4.8   1.6e-18   1.1e-15       3      50 .]     271     318 ..     269     318 .. 0.95

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 1.6e-18
   PF13920.1   3 ktCvvClereadvlllpCgHlclCeeCaerllkrkkkCpiCrspiesv 50 
                   C +C ++e++++l+pC Hl++C++Cae++ +++k+Cp+Cr piesv
  MMETSP0890-20130614|6204_1 271 ILCAICNDNERSIVLQPCSHLAVCASCAEKISEKSKECPLCRGPIESV 318
                 57*****************************99************986 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.6   6.6e+03      39      43 ..      75      79 ..      71      85 .. 0.63
   2 !   37.4   4.9   2.2e-12   1.5e-09       2      45 ..     270     312 ..     269     313 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 9.6
   PF13923.1 39 kkCPi 43
                ++CPi
  MMETSP0890-20130614|6204_1 75 ESCPI 79
                34443 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 2.2e-12
   PF13923.1   2 rfsCpiCleelenpviltpCgHl.yCkkCieqwlekskkkCPiCr 45 
                 +  C iC+++ ++  +l pC Hl +C +C+e++ ek +k+CP+Cr
  MMETSP0890-20130614|6204_1 270 EILCAICNDNERSI-VLQPCSHLaVCASCAEKISEK-SKECPLCR 312
                 678**********9.57*****999***********.*******9 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.5   2.4e+03      25      31 ..      73      79 ..      67      85 .. 0.65
   2 !   26.0   4.7   7.5e-09   5.1e-06       3      45 ..     273     313 ..     271     314 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.5
   PF13639.1 25 fHeeCld 31
                +He+C  
  MMETSP0890-20130614|6204_1 73 IHESCPI 79
                4555544 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 7.5e-09
   PF13639.1   3 CaiCldelsegeevvrlpCgHv.fHeeCldewlrssnsCPlCrk 45 
                 CaiC d+    +++v  pC+H+  +++C ++  ++s++CPlCr 
  MMETSP0890-20130614|6204_1 273 CAICNDNE---RSIVLQPCSHLaVCASCAEKISEKSKECPLCRG 313
                 ******96...6888888***88********************6 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   7.4   1.7e-07   0.00012       1      41 []     273     311 ..     273     311 .. 0.98

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.7e-07
                 -TTTSSS-SSEE.BSCTS-E.E-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                 C+iC ++   ++ l +C H  +C +C +ki +  k+++CPlC
  MMETSP0890-20130614|6204_1 273 CAICNDNERSIV-LQPCSHLaVCASCAEKISE--KSKECPLC 311
                 ************.******99***********..8899**** PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00089      0.61      22      44 ..     173     195 ..     171     199 .. 0.88
   2 ?    5.7   0.4     0.019        13      21      43 ..     230     252 ..     226     267 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00089
  PF01166.13  22 qIkeLeeknsklerEnellksla 44 
                 ++++L+e++++le En+  ++ +
  MMETSP0890-20130614|6204_1 173 HVHDLYEQIQQLEAENQQVRQQV 195
                 6899*************999876 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.019
  PF01166.13  21 eqIkeLeeknsklerEnellksl 43 
                 +qI eL +++  ++rEn  ++++
  MMETSP0890-20130614|6204_1 230 QQIDELGNRLVSVKRENIEMRQV 252
                 69***************999986 PP

>> PF05812.7  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.2     2e-05     0.013       5      69 ..     174     251 ..     171     275 .. 0.76
   2 ?    1.9   0.3      0.25   1.7e+02       2      41 ..     229     272 ..     228     307 .. 0.52

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHHHHHHHHHHCHHH---............--TT--B--HHH...HHHHHHHHHHH---HHHHHHHHHH CS
   PF05812.7   5 veeLaaelakLklENkaLkkklksstg..........pkespkdevLtprq...kealitsavskLssqAskkieakv 69 
                 v +L +++++L+ EN++ ++++  ++            +e p ++  t+++   k+ +i ++ ++L+s   + ie + 
  MMETSP0890-20130614|6204_1 174 VHDLYEQIQQLEAENQQVRQQVTGTKYypihineavdDDEPPVKKLCTNNNfsiKNQQIDELGNRLVSVKRENIEMRQ 251
                 789*******************99888999998888444444444445543555899999999999999999998763 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.25
                 -CCHHHHHHHHHHHHHHHHHHHHCHHH---......--TT--B- CS
   PF05812.7   2 dltveeLaaelakLklENkaLkkklksstg....pkespkdevL 41 
                 +++++eL ++l   k EN ++++     ++     +++ +de+L
  MMETSP0890-20130614|6204_1 229 NQQIDELGNRLVSVKRENIEMRQVNDALVQeklkLEHKVDDEIL 272
                 66788888888888888888876433222222334555555555 PP

>> PF02670.11  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.9e-06    0.0068      25      99 ..     214     289 ..     203     306 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9.9e-06
                 EEEEEEEESS-HHHHHHHHHHCT-SEEEESSHHH.HHHHHHHCHH----SEEE---HHHHHHHTHTT-SEEEE--- CS
  PF02670.11  25 fevvalaagsnvellaeqakefkpklvavadeea.akelkealkekelktevlaGeealkelaeeeeadvvvnaiv 99 
                   v  l  ++n++  ++q+ e+  +lv+v++e+  ++++++al +++lk e  + +e l+++++ +e  +v++  +
  MMETSP0890-20130614|6204_1 214 PPVKKLCTNNNFSIKNQQIDELGNRLVSVKRENIeMRQVNDALVQEKLKLEHKVDDEILCAICNDNERSIVLQPCS 289
                 56889999*********************999864899********************************998655 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   3.3   2.4e-05     0.017       4      51 ..     267     317 ..     264     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-05
   PF14447.1   4 qqpeqpcllcgtvgtkrvllpCgHl.vpdetFd..lerYsgCPfCgtrlet 51 
                  ++e+ c  c+ ++   vl pC Hl v++ + +   e+   CP+C  ++e+
  MMETSP0890-20130614|6204_1 267 VDDEILCAICNDNERSIVLQPCSHLaVCASCAEkiSEKSKECPLCRGPIES 317
                 5799********************88*****9843366678*******996 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15     1e+02      13      73 ..     175     194 ..     166     200 .. 0.61
   2 ?   10.8   0.4   0.00055      0.38       9      46 ..     229     266 ..     222     280 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.15
   PF05837.7  13 retreeLsdvekerlqlkqknrelvrellelkkkkesdredeelkeklekleaelkkskkk 73 
                 +                                         +l e++++leae ++ +++
  MMETSP0890-20130614|6204_1 175 H-----------------------------------------DLYEQIQQLEAENQQVRQQ 194
                 3.........................................4555566666655555555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00055
   PF05837.7   9 qqasretreeLsdvekerlqlkqknrelvrellelkkk 46 
                 +q++ e+ ++L +v++e++++ q n +lv+e l+l+ k
  MMETSP0890-20130614|6204_1 229 NQQIDELGNRLVSVKRENIEMRQVNDALVQEKLKLEHK 266
                 688999*************************9999877 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00038      0.26       9      40 ..     164     195 ..     157     199 .. 0.75
   2 ?    4.5   1.3     0.032        22      18      48 ..     238     268 ..     222     270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00038
  PF04977.10   9 lifgksgllalyqlkqeiaalqaelaklkaen 40 
                 ++  k  ++ +++l ++i++l+ae+++++++ 
  MMETSP0890-20130614|6204_1 164 VWAEKFYVHHVHDLYEQIQQLEAENQQVRQQV 195
                 55556667778889999999999999999975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.032
  PF04977.10  18 alyqlkqeiaalqaelaklkaeneeLeaevk 48 
                 +l ++k+e  +  + +++l +e+ +Le++v+
  MMETSP0890-20130614|6204_1 238 RLVSVKRENIEMRQVNDALVQEKLKLEHKVD 268
                 4567777777777777777777777777776 PP

>> PF11011.3  Protein of unknown function (DUF2849)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00015       0.1      10      63 ..     153     205 ..     150     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00015
   PF11011.3  10 ldGavvyltadgsWsedlaeAevledeeaaeallaaaaaqanevvgpyladvea 63 
                  dG+vv+   +  W e++   +v +  e+ ++l+a++++ +++v+g    +++ 
  MMETSP0890-20130614|6204_1 153 DDGRVVWAGCTV-WAEKFYVHHVHDLYEQIQQLEAENQQVRQQVTGTKYYPIHI 205
                 79******8877.************************999*****987766654 PP

>> PF11885.3  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00016      0.11     263     312 ..     167     219 ..     162     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00016
   PF11885.3 263 arfyipsvhgswedfrqlveeqakgektvwgp...ekdkleeplgpeppvsse 312
                 ++fy+ +vh+ +e+++ql  e+++ +++v g    + + +e+  + eppv++ 
  MMETSP0890-20130614|6204_1 167 EKFYVHHVHDLYEQIQQLEAENQQVRQQVTGTkyyPIHINEAVDDDEPPVKKL 219
                 79*******************9999******9998677778888999999876 PP

>> PF03980.9  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0049       3.3      83     106 ..     173     196 ..     168     200 .. 0.88
   2 ?    4.2   0.1     0.057        39      69     103 ..     217     251 ..     206     260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0049
   PF03980.9  83 qleeLnarlqklqaeNaeladeiq 106
                 + ++L +++q+l+aeN++++++++
  MMETSP0890-20130614|6204_1 173 HVHDLYEQIQQLEAENQQVRQQVT 196
                 678899****************97 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.057
   PF03980.9  69 eellaahLvpllekqleeLnarlqklqaeNaelad 103
                 ++l+  +  + +++q++eL +rl ++++eN e+++
  MMETSP0890-20130614|6204_1 217 KKLCTNNNFSIKNQQIDELGNRLVSVKRENIEMRQ 251
                 667777777899******************99876 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.049        33      30      49 ..     176     195 ..     172     199 .. 0.74
   2 ?    5.9   1.3     0.016        11      24      63 ..     228     267 ..     228     268 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHH....... CS
  PF00170.16  30 eLeekvkeLeaeNkaLkkel 49 
                  L e +++LeaeN++ ++++
  MMETSP0890-20130614|6204_1 176 DLYEQIQQLEAENQQVRQQV 195
                 57788888999998887665 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
  PF00170.16  24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 K ++i+eL ++  + + eN ++++ ++ l +e  kl+ +v
  MMETSP0890-20130614|6204_1 228 KNQQIDELGNRLVSVKRENIEMRQVNDALVQEKLKLEHKV 267
                 889**************************99999998775 PP

>> PF03854.9  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         5   3.4e+03      36      43 ..      75      82 ..      72      86 .. 0.74
   2 ?   11.2   3.2   0.00025      0.17       5      49 ..     273     319 ..     269     320 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5
                SEETTTTE CS
   PF03854.9 36 erCpiCkk 43
                e Cpi + 
  MMETSP0890-20130614|6204_1 75 ESCPIIWL 82
                78999984 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00025
                 --SS-S-----E..E-SS-EE-HHHHHHT-SSSSEETTTTEE----S CS
   PF03854.9   5 CksCWfkdksLv..eCsdHYLClrClqllLsvserCpiCkkPLPtkl 49 
                 C  C  ++ s+v   Cs   +C  C + +   s+ Cp+C+ P+   l
  MMETSP0890-20130614|6204_1 273 CAICNDNERSIVlqPCSHLAVCASCAEKISEKSKECPLCRGPIESVL 319
                 78888888887743599999**********************87665 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00035      0.24      29      48 ..     176     195 ..     172     198 .. 0.85
   2 ?    1.7   1.7      0.29     2e+02      27      54 .]     232     259 ..     228     266 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00035
  PF07716.10  29 eleervkeLeeeNaqLrqkv 48 
                 +l e++++Le+eN+q rq+v
  MMETSP0890-20130614|6204_1 176 DLYEQIQQLEAENQQVRQQV 195
                 67789999999999999998 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.29
  PF07716.10  27 eeeleervkeLeeeNaqLrqkveqLeke 54 
                  +el +r+ ++++eN + rq +++L +e
  MMETSP0890-20130614|6204_1 232 IDELGNRLVSVKRENIEMRQVNDALVQE 259
                 5677788888888888888888887665 PP

>> PF10571.4  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.8    0.0081       5.6       3      20 ..     294     311 ..     293     311 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0081
   PF10571.4   3 CPnCrkeVptaakrCphC 20 
                 C  C+++++  +k+Cp+C
  MMETSP0890-20130614|6204_1 294 CASCAEKISEKSKECPLC 311
                 778*************** PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.3   1.6e+03      25      36 ..     266     277 ..     256     282 .. 0.69
   2 ?    5.2   4.9     0.024        16      14      49 ..     272     311 ..     264     316 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.3
   PF12773.2  25 ataeevlCpsCg 36 
                 + ++e+lC  C+
  MMETSP0890-20130614|6204_1 266 KVDDEILCAICN 277
                 445678888887 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.024
   PF12773.2  14 fCpqCgaklk....eataeevlCpsCgesvspkarfCpnC 49 
                  C  C+   +    ++     +C sC e++s+k++ Cp C
  MMETSP0890-20130614|6204_1 272 LCAICNDNERsivlQPCSHLAVCASCAEKISEKSKECPLC 311
                 5666666666666644444567888888888888888877 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1      0.02        14       4      28 ..     175     199 ..     172     214 .. 0.62
   2 ?    4.3   1.4     0.065        44      21      57 ..     229     265 ..     215     283 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.02
   PF06156.8   4 kelfdklseleeqleelleeleelk 28 
                 ++l++++++le + +++ ++++  k
  MMETSP0890-20130614|6204_1 175 HDLYEQIQQLEAENQQVRQQVTGTK 199
                 3566666666666666666665555 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.065
   PF06156.8  21 leeleelkkelkelleenaelkleneklrerleelee 57 
                 +++++el ++l ++  en e++  n++l ++  +le+
  MMETSP0890-20130614|6204_1 229 NQQIDELGNRLVSVKRENIEMRQVNDALVQEKLKLEH 265
                 4555566666666666666665555555443333322 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.9     0.006       4.1      40      75 .]     273     312 ..     242     312 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.006
   PF12678.2  40 g...ksdecpvawgeCgH.aFHlhCiskWlktrktCPlcr 75 
                     +++e ++++  C+H a    C +k  +++k+CPlcr
  MMETSP0890-20130614|6204_1 273 CaicNDNERSIVLQPCSHlAVCASCAEKISEKSKECPLCR 312
                 033345678899999***445689***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1071  (0.0783353); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:01.20
# Mc/sec: 647.02
//
Query:       MMETSP0890-20130614|6206_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-15   54.5   0.0    1.2e-14   53.9   0.0    1.2  1  PF00466.15 Ribosomal protein L10


Domain annotation for each model (and alignments):
>> PF00466.15  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   8.5e-19   1.2e-14       3      97 ..      25     125 ..      23     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 8.5e-19
                 HHHHHHHHHHHHHHHCTTSEEEEE--.----HHHHHHHHHHHHHH--EEEEE-HHHHHHHHHHTT-...-.....-GGGG---EEEEEE---THHHHHHHHH CS
  PF00466.15   3 kekKeelvkelkellkkyssvlvvdy.dgltvkqlqelRkelrekgaelkvgkntlmkrAlektgeee.k.....lkellkgptaliftnedpvelakvlek 97 
                 +ek+  +v+ l+e+++k +sv+++++ +g +++q++ lR +l ++ ++l+ gk+tlm++Al++t  +e +     l+  ++g++al++++e+ ++++ +le+
  MMETSP0890-20130614|6206_1  25 SEKRSGYVEGLRECVEKKNSVYLISVgSGTRNRQFKSLRSALPSN-SRLFLGKKTLMQLALGTTVGSElRpnlskLAVRIEGNMALLVSDEPQQSIKAILES 125
                 689999********************99****************9.*******************986447877788899*********9988888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 779.66
//
Query:       MMETSP0890-20130614|6207_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-77  256.7   0.0      1e-76  256.4   0.0    1.1  1  PF01214.13 Casein kinase II regulatory subunit


Domain annotation for each model (and alignments):
>> PF01214.13  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.4   0.0   7.5e-81     1e-76       1     184 []      41     224 ..      41     224 .. 0.99

  Alignments for each domain:
  == domain 1    score: 256.4 bits;  conditional E-value: 7.5e-81
  PF01214.13   1 sWissflslkgneyfvevdeefieddfnltgLqeevknykealelildkekeeeeklkeekkseieksaellYglihaRyiltkkglqqmkekyeegefgtCPrvlcnkqkvLPvGlsdkpgeetvklyCpkCedvYepkssrlssiDGafFGtsfphlllktypelepkkkkkkyepkifGfk 184
                 sWi +flsl+gne+f+evde++i+ddfnltgL+  v++y+ al++ild+e ++ee+l +e+++ +e++ae+lYglihaR+ilt++g+q+m+eky++++fg+CPr++c +q+vLP+G sd p++ tv+++Cp C+d+Y p+s+r +siDGa+FGt+f hl+l+t+pe+ p+++ ++y+p+ifGf+
  MMETSP0890-20130614|6207_1  41 SWIAWFLSLRGNEFFCEVDEDYIQDDFNLTGLSPLVPYYDYALDMILDVELNTEEALADEQQELVESAAEMLYGLIHARFILTNRGMQTMYEKYTSATFGRCPRAFCCGQPVLPLGRSDLPRNFTVHVFCPMCRDIYIPRSTRAASIDGAYFGTTFSHLFLMTFPEHIPSRPIQTYVPRIFGFR 224
                 7**************************************************************************************************************************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:01.05
# Mc/sec: 787.37
//
Query:       MMETSP0890-20130614|6208_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1126  (0.0823581); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:01.13
# Mc/sec: 681.07
//
Query:       MMETSP0890-20130614|6210_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-09   36.7   2.7    0.00013   21.2   0.0    3.6  4  PF02037.22 SAP domain
     0.0035   16.9   0.0       0.22   11.0   0.0    2.4  2  PF10208.4  Degradation arginine-rich protein for mis-folding
  ------ inclusion threshold ------
      0.011   15.1   0.4       0.21   11.1   0.1    2.4  2  PF09124.5  T4 recombination endonuclease VII, dimerisation
       0.11   12.1   0.8         12    5.6   0.1    2.5  2  PF09312.6  SurA N-terminal domain


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00051       1.7       2      18 ..      66      82 ..      65      83 .. 0.91
   2 !    5.7   0.1    0.0028       9.5      24      34 ..      90     100 ..      90     100 .. 0.95
   3 !   21.2   0.0   3.8e-08   0.00013       2      34 ..     130     164 ..     129     165 .. 0.93
   4 ?   -3.5   0.0       2.1   7.2e+03       8      16 ..     292     300 ..     291     300 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00051
                TT--HHHHHHHHHHTT- CS
  PF02037.22  2 skltVaeLKaeLkkrGL 18
                 k++ a+ + eL++rG 
  MMETSP0890-20130614|6210_1 66 RKMRAAQIQTELRERGV 82
                69*************95 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHH CS
  PF02037.22  24 KaeLieRLkeh 34 
                 K++L++RL+e+
  MMETSP0890-20130614|6210_1  90 KEDLVQRLLEY 100
                 99*******98 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 3.8e-08
                 TT--HHHHHHHHHHTT------..HHHHHHHHHHH CS
  PF02037.22   2 skltVaeLKaeLkkrGLptsGk..KaeLieRLkeh 34 
                 ++++ ++L++ Lk +G++t G   K +L++ ++++
  MMETSP0890-20130614|6210_1 130 NGMRLSQLQSALKDMGISTRGMfeKSQLVDAYVKA 164
                 68****************************99887 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 2.1
                 HHHHHHHHT CS
  PF02037.22   8 eLKaeLkkr 16 
                 e +++L+++
  MMETSP0890-20130614|6210_1 292 EVRDLLREL 300
                 779999985 PP

>> PF10208.4  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   6.5e-05      0.22     102     141 ..      63     102 ..      55     115 .. 0.87
   2 ?    3.2   0.0     0.016        54     106     135 ..     131     160 ..     123     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10208.4 102 vdlkklkvkelkkilaeWgeeckgcleksdfikkieelkp 141
                   ++k+++++++  l+e g   + c ek+d+++++ e ++
  MMETSP0890-20130614|6210_1  63 ETIRKMRAAQIQTELRERGVRYDDCFEKEDLVQRLLEYHK 102
                 5689******************************988654 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10208.4 106 klkvkelkkilaeWgeeckgcleksdfikk 135
                  ++  +l+  l++ g + +g  eks++++ 
  MMETSP0890-20130614|6210_1 131 GMRLSQLQSALKDMGISTRGMFEKSQLVDA 160
                 58999********************98864 PP

>> PF09124.5  T4 recombination endonuclease VII, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.1e-05      0.21      16      43 ..      67      95 ..      65     103 .. 0.81
   2 ?    1.4   0.0     0.063   2.2e+02      23      48 ..     139     164 ..     132     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.1e-05
   PF09124.5 16 lkkeemi.aelqsrGfeYndkdtkaeLvk 43
                + ++++i  el++rG+ Y+d  +k++Lv+
  MMETSP0890-20130614|6210_1 67 KMRAAQIqTELRERGVRYDDCFEKEDLVQ 95
                5566555269*****************97 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.063
   PF09124.5  23 aelqsrGfeYndkdtkaeLvkkfrKq 48 
                   l+++G+      +k++Lv+ + K 
  MMETSP0890-20130614|6210_1 139 SALKDMGISTRGMFEKSQLVDAYVKA 164
                 568888999899999********986 PP

>> PF09312.6  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0035        12      70     106 ..      53      89 ..      41      97 .. 0.84
   2 ?    4.4   0.0    0.0086        29      81     104 ..     128     151 ..     116     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0035
   PF09312.6  70 eelnqaiaeiAkqnklsldqlraalaedGlsyeefre 106
                 +++++a ++    +k+  +q++++l e G+ y++  e
  MMETSP0890-20130614|6210_1  53 DNMEAAAQSAETIRKMRAAQIQTELRERGVRYDDCFE 89 
                 456777777777899*****************98755 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0086
   PF09312.6  81 kqnklsldqlraalaedGlsyeef 104
                 k n++ l+ql++al++ G+s   +
  MMETSP0890-20130614|6210_1 128 KANGMRLSQLQSALKDMGISTRGM 151
                 679***************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:01.56
# Mc/sec: 466.98
//
Query:       MMETSP0890-20130614|6219_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   53.4  18.2     0.0011   18.9   0.1    8.5  9  PF01851.17 Proteasome/cyclosome repeat
     0.0091   15.2   0.3      0.066   12.4   0.0    2.2  2  PF04278.7  Tic22-like family
  ------ inclusion threshold ------
      0.038   13.8   0.0        9.7    6.0   0.0    3.0  2  PF10363.4  Protein of unknown function (DUF2435)


Domain annotation for each model (and alignments):
>> PF01851.17  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         3   1.4e+04      11      22 ..     185     197 ..     184     199 .. 0.77
   2 !   15.0   0.0   4.2e-06     0.019       2      34 ..     437     468 ..     436     469 .. 0.91
   3 !    8.9   0.0   0.00038       1.7       1      25 [.     470     496 ..     470     505 .. 0.73
   4 !   11.3   0.1   6.7e-05       0.3       2      31 ..     512     541 ..     511     544 .. 0.85
   5 ?    1.8   0.0     0.068   3.1e+02       2      25 ..     548     571 ..     548     575 .. 0.82
   6 ?   -0.7   0.0      0.43   1.9e+03       8      16 ..     628     636 ..     628     644 .. 0.76
   7 ?   -1.0   0.0      0.53   2.4e+03       9      33 ..     736     762 ..     735     764 .. 0.82
   8 !   18.9   0.1   2.5e-07    0.0011       2      31 ..     766     795 ..     765     798 .. 0.89
   9 ?    1.7   0.5     0.071   3.2e+02       4      14 ..     804     814 ..     804     819 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3
  PF01851.17  11 aGsgne.ealelL 22 
                 + ++ e ea++lL
  MMETSP0890-20130614|6219_1 185 LQHNAEaEAIDLL 197
                 66777789***99 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4.2e-06
  PF01851.17   2 AalALGlihaGsgneealelLspylsdtsnevr 34 
                 Aa++LG+i+++ + ee+l  ++++l++t+++v+
  MMETSP0890-20130614|6219_1 437 AAASLGMIMMW-DVEEGLTKIDKFLHSTDDNVK 468
                 9**********.7777**************997 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00038
  PF01851.17   1 GAalALGlihaGsgne..ealelLspy 25 
                 GA+lA+Gl+ a+  ++  + ++lL +y
  MMETSP0890-20130614|6219_1 470 GACLAIGLVSANIRHDadPPIALLPEY 496
                 9**********9776645555555555 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 6.7e-05
  PF01851.17   2 AalALGlihaGsgneealelLspylsdtsn 31 
                 A  ALG+++aG  +e+a elL +++++ ++
  MMETSP0890-20130614|6219_1 512 ASTALGIAYAGCQREDAKELLASIVQSHDD 541
                 6669*******99999*******9887665 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.068
  PF01851.17   2 AalALGlihaGsgneealelLspy 25 
                 Aal+LG i+ Gs+++++   +++ 
  MMETSP0890-20130614|6219_1 548 AALSLGEIYVGSCDQDVAGTILQR 571
                 89*************888777665 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 0.43
  PF01851.17   8 lihaGsgne 16 
                 +++aG+gn 
  MMETSP0890-20130614|6219_1 628 MAYAGTGNV 636
                 69*****97 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 0.53
  PF01851.17   9 ihaGsgne..ealelLspylsdtsnev 33 
                 + + +gn   ++++ +s + +d +nev
  MMETSP0890-20130614|6219_1 736 ALLKVGNPeyAVVDAMSRLTHDADNEV 762
                 556677888889999****9****998 PP

  == domain 8    score: 18.9 bits;  conditional E-value: 2.5e-07
  PF01851.17   2 AalALGlihaGsgneealelLspylsdtsn 31 
                 A+ +LGl+ +G++n ++  lL++++ ++ +
  MMETSP0890-20130614|6219_1 766 AIVGLGLLACGTNNSRVAGLLRQLAEHSRD 795
                 99*********************9887765 PP

  == domain 9    score: 1.7 bits;  conditional E-value: 0.071
  PF01851.17   4 lALGlihaGsg 14 
                 lA+Gl+h+G g
  MMETSP0890-20130614|6219_1 804 LAQGLLHLGKG 814
                 8********87 PP

>> PF04278.7  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.11     5e+02      99     146 ..      17      64 ..       9      78 .. 0.67
   2 !   12.4   0.0   1.5e-05     0.066      83     142 ..     499     557 ..     489     566 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.11
   PF04278.7  99 gksvgllfisqedAeallkelkkqnpel.kkgakvvpislgqvyklaqe 146
                 +k+v ++ +s ed +all+ l    ++l +++a+v++++l++ +k +++
  MMETSP0890-20130614|6219_1  17 EKKVEEVELSAED-QALLEGLELAVERLqENDAQVQAMALEHLVKEVRA 64 
                 6677777777666.67777777777777677788888888777665444 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.5e-05
   PF04278.7  83 anskgepllvsgkreggksvgllfisqedAeallkelkkqnpelkkgakvvpislgqvyk 142
                  +++ +p++v ++++    ++ + +++edA++ll+ + +++++++  a+++++slg++y 
  MMETSP0890-20130614|6219_1 499 EDADSTPVIVKVAASTALGIAYAGCQREDAKELLASIVQSHDDVAL-ASLAALSLGEIYV 557
                 58999*********99999999********************9986.6899*******95 PP

>> PF10363.4  Protein of unknown function (DUF2435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1    0.0079        36       6      45 ..      36      74 ..      32      86 .. 0.84
   2 ?    6.0   0.0    0.0021       9.7      48      91 ..     749     792 ..     742     795 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0079
   PF10363.4  6 lkkalkslqdplvPvrahgLllLrrlvekksaedvadvpk 45
                l+ a+++lq++   v+a +L +L + v+  +  ++++vpk
  MMETSP0890-20130614|6219_1 36 LELAVERLQENDAQVQAMALEHLVKEVRAAT-SSMTSVPK 74
                677999********************99988.66666666 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0021
   PF10363.4  48 elllsqlkdedsfvYLnaikgLaalaevdpeevlktLveeYadk 91 
                 + + +  +d d+ v Lnai gL+ la  +++  ++ L+++ a++
  MMETSP0890-20130614|6219_1 749 DAMSRLTHDADNEVTLNAIVGLGLLACGTNNSRVAGLLRQLAEH 792
                 5555666777999************************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.37u 0.37s 00:00:01.74 Elapsed: 00:00:01.20
# Mc/sec: 1909.10
//
Query:       MMETSP0890-20130614|6226_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 352.41
//
Query:       MMETSP0890-20130614|6221_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-20   71.7   0.2    1.5e-19   70.5   0.1    1.7  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    5.2e-05   23.2   0.0    9.4e-05   22.4   0.0    1.4  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
    0.00045   20.0   0.1     0.0012   18.6   0.0    1.8  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus
    0.00057   20.1   0.0     0.0016   18.7   0.0    1.7  1  PF03447.11 Homoserine dehydrogenase, NAD binding domain
     0.0065   16.6   0.0      0.012   15.7   0.0    1.5  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
     0.0098   15.5   0.0      0.024   14.3   0.0    1.6  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain
  ------ inclusion threshold ------
      0.014   15.5   0.1      0.031   14.4   0.1    1.7  1  PF13241.1  Putative NAD(P)-binding
      0.052   12.3   0.4      0.076   11.8   0.3    1.3  1  PF03435.13 Saccharopine dehydrogenase


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   8.9e-23   1.5e-19       2     119 ..      18     137 ..      17     138 .. 0.95

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 8.9e-23
                 EEEEE----HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHH.HHHCTHHCCSSHHHHHHST..T-SEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE CS
  PF01408.17   2 rvgivGaGkigsrhlrplnesqrreelvalvdpdperaeav.aesfgveaysdleelledp..kidavivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsvg 119
                 +v +vG+G++g+ + + + +s  +++lv++vd+d++ + ++ +++ g+ea+  le+ ++     id+v+v+ p+  h  ++  a+e g hv +EKP+a+t++++++ +e ++++g+ +s++
  MMETSP0890-20130614|6221_1  18 NVIVVGGGRMGEIRCEHVARS-AKARLVGFVDRDASTSARLaSKHAGCEAFVRLEDAIDAMfePIDVVWVCAPSPVHLSIITSAAEYGAHVAVEKPVAMTMDDIEDAYEVCDANGVYLSCA 137
                 789************999999.9*************999997899********99999988878***************************************************999876 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.5e-08   9.4e-05       5      94 ..       9     101 ..       5     135 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 5.5e-08
                 H--....--EEEEE----HHHHHGGG--TT.T-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEEE-S--SS-..SB-GGG CS
  PF01488.15   5 kkleslkgkkvlviGAGemarlvakhLlek.gvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvisatsapep..iiekea 94 
                 k  ++ + ++v+v+G+G m++  ++h +++ +++ +  + R+a+  ++La+++ g e+ +   + ++++ ++ dvv  +  +p +  ii+  a
  MMETSP0890-20130614|6221_1   9 KVSPDCRPANVIVVGGGRMGEIRCEHVARSaKARLVGFVDRDASTSARLASKHAGCEAFVRLEDAIDAMFEPIDVVWVCAPSPVHlsIITSAA 101
                 455578889******************99989999******************7775555555566799********9999987665554443 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.8e-07    0.0012       2      71 ..      18      84 ..      17     116 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.8e-07
                EE--B--------HHHHHHHH.---EE-EE-----...........................-EE--S-- CS
  PF01113.15  2 kvavvGasGrmGkevikaieeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvl 71
                +v+vvG  GrmG+  ++ + ++++++lv+ vdr+  ++ ++ a++ +g+ +  v ++d +++++e  dv+
  MMETSP0890-20130614|6221_1 18 NVIVVGG-GRMGEIRCEHVARSAKARLVGFVDRDA-STSARLASKHAGC-EAFVRLEDAIDAMFEPIDVV 84
                79****8.*************************98.5555555555554.44455556666666666654 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.4e-07    0.0016       2     112 ..      24     132 ..      23     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.4e-07
                 ------HHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHH..S-EEEEE-S--TTT---HHHHHH---EEE----TGGG-HCHHHCCCSSSTT--- CS
  PF03447.11   2 lGaiGsallellkrqqeeiplelvavadrdsllskarkallgdeavtldlddlvadl..rvdvvVEcasseavaelvlkaLeagkhvvtankgAladealyeeLreaaeasgv 112
                  G+ G   +e+++r +   +++lv+++drd  +s++ +++ + +    +l+d ++ +  ++dvv  ca+s    ++++ a e g hv +    A++ ++  e+ +e++ a+gv
  MMETSP0890-20130614|6221_1  24 GGRMGEIRCEHVARSA---KARLVGFVDRDASTSARLASKHAGCEAFVRLEDAIDAMfePIDVVWVCAPSPVHLSIITSAAEYGAHVAVEKPVAMT-MDDIEDAYEVCDANGV 132
                 5777777788888887...79*********888999999999999999999999999967****************************99998988.7777777777777776 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.2e-06     0.012       1      93 [.      18     107 ..      18     141 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.2e-06
                 EEEEB--------HHHHHHHCTSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEEGCGCCCTC-SEEEE---HHHHHHHHHCHHHTTSEE CS
  PF01118.19   1 kvaivGatGyvGqellrlLeehpelelvalvassrsaGkklaeahkaleegkdlvledadeeelkevdivflalpagvskelapklleagvkv 93 
                 +v +vG  G +G+   +  +++ ++ lv +v ++ s   +la++h      + ++leda ++ ++ +d+v +++p+ v+ +++  ++e g++v
  MMETSP0890-20130614|6221_1  18 NVIVVG-GGRMGEIRCEHVARSAKARLVGFVDRDASTSARLASKHA--GCEAFVRLEDAIDAMFEPIDVVWVCAPSPVHLSIITSAAEYGAHV 107
                 699999.999**999***************************9988..5556677888888999************************99977 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.4e-05     0.024       3      62 ..     152     206 ..     151     233 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
                 HHHTTGG--SSEEEEEEEEEEECCSCHHCTTSSCCHHCHHCCTTCHHHHHHHHHHHT-EE CS
  PF02894.12   3 liengklGevvsvsvwflddragrpskkrwkrrakkggGvlgdlgiHdiDllqwLfGepp 62 
                 +++ g +Ge++s+     +d +g+p+ +        gg ++ d+++HdiD ++ L+  + 
  MMETSP0890-20130614|6221_1 152 AVAHGDIGEPLSIR-AVFRDHPGPPAAFLKD----AGGDIFHDIATHDIDYILDLVKRRL 206
                 577899*******9.7777777777777777....6***************999886665 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.8e-05     0.031       5      73 ..      14      93 ..      10     129 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-05
                -TT-EEEEE-------HHHHHHTT---EEEE...E-SS--TT-T.......................-TT--EEEEE--S-HHH CS
   PF13241.1  5 lkgkkvlvvGgGevAarkvrklleagakvtv...vspeikeleelvklaeee............feedlegadlviaatddeel 73
                ++  +v+vvGgG++++ ++++++++ ak  +   v+ +   ++   +la ++            +++ +e +d+v+++ + +  
  MMETSP0890-20130614|6221_1 14 CRPANVIVVGGGRMGEIRCEHVARS-AKARLvgfVDRD---ASTSARLASKHagceafvrledaIDAMFEPIDVVWVCAPSPVH 93
                66789******************97.555551224444...3333333322222222222111145556667788888765544 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.4e-05     0.076       1      95 [.      19     108 ..      19     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.4e-05
  PF03435.13   1 vlvlGaGsvGqavaellarhgdvdeitvadrtlekaqalaakalglrveaialdvsnyeaLeallkegdlvvnlappilsltvlkaCietgvhyv 95 
                 v+v+G+G++G+   e +ar+ + + +  +dr+ +  ++la+    + + ++a+ +  ++a++a+ +  d+v  +ap   +l+++ +++e g+h+ 
  MMETSP0890-20130614|6221_1  19 VIVVGGGRMGEIRCEHVARSAKARLVGFVDRDASTSARLAS----KHAGCEAFVRL-EDAIDAMFEPIDVVWVCAPSPVHLSIITSAAEYGAHVA 108
                 89******************999788899999999888875....45555555544.45599*******************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.79
# Mc/sec: 1183.01
//
Query:       MMETSP0890-20130614|6227_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-17   61.4   0.4    3.1e-16   58.8   0.0    2.6  4  PF00271.26 Helicase conserved C-terminal domain
    2.8e-13   49.2   0.1    8.2e-13   47.7   0.0    1.7  2  PF00176.18 SNF2 family N-terminal domain
    1.7e-07   30.2   0.0    3.8e-07   29.1   0.0    1.5  1  PF11496.3  Class II histone deacetylase complex subunits 2 and 3


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.46   2.1e+03      24      42 ..     164     182 ..     163     185 .. 0.84
   2 !   58.8   0.0   6.8e-20   3.1e-16       2      78 .]     192     271 ..     191     271 .. 0.97
   3 ?   -3.8   0.0       2.4   1.1e+04      10      28 ..     308     326 ..     302     327 .. 0.75
   4 ?   -3.9   0.1       2.5   1.1e+04      10      32 ..     407     429 ..     405     432 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.46
                 HHHHHHHTTTSSEEEESTT CS
  PF00271.26  24 eileqfnagkskvlvatnv 42 
                  il +f+ag  +vl  +++
  MMETSP0890-20130614|6227_1 164 NILPKFKAGGHRVLMFSQM 182
                 68999*********98876 PP

  == domain 2    score: 58.8 bits;  conditional E-value: 6.8e-20
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 +++ +g+ +++l+g++ ++ere+ + +fn+ +s    +l++t++++ G++l ++++V++fd +++++   Q+ +R++R+g
  MMETSP0890-20130614|6227_1 192 FFTYRGYTYLRLDGSTHAEERERQVARFNDPSSpifIFLLSTRAGGLGLNLASADTVVIFDSDWNPMMDSQAQDRAHRIG 271
                 78899****************************9999*****************************************87 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2.4
                 EEEE-TTS-HHHHHHHHHH CS
  PF00271.26  10 vailhgelpqnereeileq 28 
                 + +++ e  + er+++le+
  MMETSP0890-20130614|6227_1 308 AGKFNKESRAHERRKMLEE 326
                 6677788888888888875 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 2.5
                 EEEE-TTS-HHHHHHHHHHHHTT CS
  PF00271.26  10 vailhgelpqnereeileqfnag 32 
                 va + +++ +n++++  ++f ++
  MMETSP0890-20130614|6227_1 407 VAHYEAQIAHNQQQAKTNNFEDS 429
                 56677778888888888877765 PP

>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.8e-16   8.2e-13     204     296 .]      13     141 ..       6     141 .. 0.89
   2 ?   -1.6   0.0      0.18   8.4e+02     202     259 ..     314     385 ..     275     430 .. 0.57

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.8e-16
                 HHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHHHHHH---------....................................-----.....THHHHHHHHHHHHH-GGGS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18 204 kskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYnklltkaravlkkav....................................eaaeeevrlksvltelqqlrkicnhpelv 296
                 +++ +++rl+++l+p++lrr+k+ v  +lp+k+e++l+++l+  q+ +Y+++   + +++k+ +                                      ++ +    ++ ++l+qlrk+cnhp+l+
  MMETSP0890-20130614|6227_1  13 ERMLVINRLHEVLRPFVLRRVKAAVLGQLPEKVEKVLRCQLTPWQRIVYEQIQRARLNTIKPGTprssileqldddkdlqddddlftngndiegsgskamITSQPKAARGGLNNILMQLRKCCNHPYLF 141
                 667789*********************************************9999999999999999***************************9976552333333334999*************986 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.18
                 TTHHHHHHHHHHHGGGG.............G-BB--GGGGTTTS--EEEEEEE.E---HHHHHHHHHHHHH- CS
                 xxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  PF00176.18 202 eekskeglrrllkllkp.............lllrrtkkdvekglppksehlle.vrlskeqkelYnklltka 259
                 e+  +e+++ l++ll++                 r ++d e+++  k   l e +  s+++ e+Y++l  ka
  MMETSP0890-20130614|6227_1 314 ESRAHERRKMLEELLREyctpndeasdvggGRSTRGSDDEEDNVRSKADALCEtIATSDQEYEIYKDLDRKA 385
                 555555555555555553333444444433333333344444454454444331445556666666544444 PP

>> PF11496.3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   8.3e-11   3.8e-07      51     293 ..     119     327 ..      78     329 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 8.3e-11
   PF11496.3  51 tlkksiklllenlslvanHPsL.lvdHymPkklllkeppeklaetSgKFevLndlinliidrkreeselkvvvisnsvkeldLiEglllGkklkykrlsgeslyeekkkvsenktkkstkekkkgkkkkqsaslwihlittdgltskdssllknakfdliisfDpsldtsspsieslrkqnrkk.npipiirlvvvnSieHaklcfkkkk.ekldylvkviaslrdsvgdlpddslpikeqk.lkyl 293
                   +  ++ +l +l+  +nHP+L   d y         + e l+++SgKF++L +++        +    +v++ s+    +dL+E +    + +y rl+g   +ee + +               + ++ s  ++i+l++t+         l+ a  d ++ fD++ +++ +s  + r +   + n++ ++rl+   ++e+  l +  +k + ++        l  + g+ +++s+ ++ +k l++l
  MMETSP0890-20130614|6227_1 119 AARGGLNNILMQLRKCCNHPYLfRSDAYR--------IDEDLIRSSGKFLLLDNILPKF-----KAGGHRVLMFSQMTAVMDLLEEFFTYRGYTYLRLDGSTHAEERERQV-------------ARFNDPSSPIFIFLLSTRAGGL----GLNLASADTVVIFDSDWNPMMDSQAQDRAHRIGQrNDVRVFRLIAAAPVEERILARATDKlNVNS--------LVVEAGKFNKESRAHERRKmLEEL 327
                 445567778899**********8888886........899*****************99.....9999********************************99999987777.............3567778889999999987654....5667789***************99988877755568*********************97754444........666677777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.59
# Mc/sec: 2014.56
//
Query:       MMETSP0890-20130614|6228_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-27   96.2   0.0    2.5e-26   92.4   0.0    2.2  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   1.8e-30   2.5e-26       3     217 ..     267     449 ..     265     460 .. 0.92

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 1.8e-30
                 EEEE-----HHHHHHHHHHHHHHHHHHHCTT---------B--SSS----EE--TTEEEHHHHHCH--------T.....................THHHHHHHHHSSSHHHHHHHHHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------.----S.SSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHH CS
  PF00454.22   3 afifkggadlrqdervlqlvrlfnkllsgegalrelaaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvklfelqkkkkpkvgslqlFlkeypdaeeflearsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp.skhee.kpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdl 217
                 ++i+k ++dlrq++  +ql+ l   +l+  +++++l++Y +++++++ g+++ + ++++l+ + r+d        ++                     +l++F   + +a  + +ar++f++sla  +++ y+l++ DRh++Nil+ + +g + hIDfG++l  s+ ++  +e+ pf+lt++f e++       +d  +f ++c++ + alr++ + 
  MMETSP0890-20130614|6228_1 267 PIIVKANDDLRQEQFASQLIALAAAILRAANVSVQLRPYECLATGPDAGIVQALSDTVSLDALRRNDD-------RY-------------------TTLLDFFERFFGRA-RLPAARTAFIESLAPACIICYLLNLKDRHNGNILL-DNKGRISHIDFGYMLAsSPGGNiGFEAAPFKLTNDFLEVI------GADRRKFDDLCYRSFIALRKHRHR 449
                 79*****************************************************************4.......45...................67899888888888.6667*******************************.****************966554169***************......6799**************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.79
# Mc/sec: 1583.42
//
Query:       MMETSP0890-20130614|6229_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.75
# Mc/sec: 1313.20
//
Query:       MMETSP0890-20130614|6230_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.4e-100  334.3   0.1    1.1e-99  333.7   0.0    1.2  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.7   0.0  7.9e-104   1.1e-99      14     462 .]       2     450 ..       1     450 [. 0.92

  Alignments for each domain:
  == domain 1    score: 333.7 bits;  conditional E-value: 7.9e-104
                 TTTEEEEEEEE---HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHH...........HHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECTTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHHTS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--E.....E.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEEEEES.SHHHH.HHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTT.S-B---TTTEE--BSSHHHHHHTEEEEEE CS
  PF00171.17  14 PatgeviakvaaataedvdaavaaAkaafkawaklpaeeRaeilrkaadl...........leerrdelaelevletGkplaearaevaeaidvlryyagaaeklegevlpssegkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleeaglPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGe.....eekaglekgyfvePtvladvtpdmriaqeEiFGPVlsvikfk.deeea.ielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaea.lpfgGvkqSglGreggkegleeytevktv 462
                 Patge+i kv+ ++ e+v++ v +Ak+a+++wa lp++eR ++l+ka ++            +er +ela l+ +e+Gk  +ea+ ev+ a+d  + + +++e+ ++ v    + ++al+ reP G v++ +PWNfP+  +   ++p laaGN+v++Kpse +pl+ + +++ l+   lP+gvl +v+g+g+ vg+ l +  d++  ++tGs ++g+k+++a+a++lk+++ ElGGk+p+++ledaD++ka+++++   ++naGQvC+ ++r+++++s  +ef ++++++a++           ++ Pl++  q++ v +++e+a ++ga+ll GG       ++++++   f++ t+l+dv+++++i +eE+FGPV+++++++ ++eea ++laNd+eyGL+a v++e+ ++a ++a++++aG+v +N++   +a+   pf G+k Sg+G  +g +g++++++ k++
  MMETSP0890-20130614|6230_1   2 PATGEIIEKVRVSSVEEVKEKVVKAKKAQPKWAGLPLNERVSLLKKAIKIgfgqskdgstkNAERVKELASLMNKEMGKLENEATEEVEGAVDK-DTFLDLIEEANKPV----DLETALIIREPHGLVGVSAPWNFPMDEILLLALPSLAAGNVVICKPSEVAPLCGAEVINSLKS-YLPEGVLDLVQGDGA-VGSLLFDLADMN--ALTGSAATGKKVMAACANTLKPLVCELGGKDPCLILEDADIEKAAKDALDFSVFNAGQVCCGIERVYIPSSKQKEFEAAILKHAENY---------EEIAPLVTLTQQAIVSNHVESALSAGARLLKGGPpqaeiLKSTKPQGSSFYPLTILSDVPQSAKITREETFGPVVALTPYDpKDEEAlVQLANDSEYGLTACVYGEK-SHAATIAAKIQAGQVGVNCWPLAAAPPqCPFVGHKSSGFGYHSGFDGWRQFSKPKSI 450
                 9*********************************************987533333333322578999***********************9997.56677888865544....36789********************************************************99.9***********996.9*****976655..68*********************************************************************************9877.........4699*****************************9988866666677779999*****************************9667776*****************76.8999****************888777779***********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.97
# Mc/sec: 1124.06
//
Query:       MMETSP0890-20130614|6231_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-41  141.0   0.1    7.3e-41  140.2   0.0    1.3  1  PF08214.6  Histone acetylation protein
    9.1e-11   41.5  12.0    9.1e-11   41.5   8.3    2.3  2  PF02135.11 TAZ zinc finger
  ------ inclusion threshold ------
      0.015   14.8   0.8      0.015   14.8   0.6    2.2  2  PF01258.12 Prokaryotic dksA/traR C4-type zinc finger


Domain annotation for each model (and alignments):
>> PF08214.6  Histone acetylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0   1.6e-44   7.3e-41      15     332 ..      38     324 ..      30     342 .. 0.78

  Alignments for each domain:
  == domain 1    score: 140.2 bits;  conditional E-value: 1.6e-44
   PF08214.6  15 ftirhvsskpkevealilfpkkeaeenlkpeftykekhflalsendgveviifglevlvYgtecdeanertiFvSkaDstgylkllklrvadvheilisYLisikqrgytrkvilaLFtraqdqYLF...PessknpkKHvLddrgLlkWwikvldkaleesaksakaklvipgsdkyetrkfipaeaksktWtvghileeisddkavyeiPlFpDDpkgrfleelieegrwksvsldqfweelafrqEfslgrlvgfiglvikpkklvkskkqykkikkaikkeeydseesaqelvqnlsskllesiekkkedlisitla 332
                 + +r vs   +e + +++f ++  ++ + +  + +++ + +++ +dgv+v+++ ++v++Y +  + +ner++++S++Ds+ +l++++ r+a++he l++YL ++k+rg+ +++i+a++++ +d+Y+F   P+ + +p+     d++L+kW+ + l+ka        ++ +v++ +   ++  ++ +  + +t       e++++d+  + +P+F++D+++  +e l e     + + +q  e+ a+r +  +  + g        +++ +s ++ k  kk+ kk ++  +  + e   +++s+l+++++ +k+ + + +l+
  MMETSP0890-20130614|6231_1  38 LLVREVSNIIEEHSIKPRFLEHV-KP-TVKTIQTRSRCITLFQTIDGVDVVLLCMYVYEYEQ--PGSNERRLYLSYLDSVNFLRPKHARTAVYHELLVGYLGDAKRRGFHTAHIWACPPKRGDDYIFnvkPKYQRTPS-----DDRLRKWYNAALEKAK-------NEGIVVNITTFWDD--LLAPLVS-ET-------ESNNNDQFLTSLPYFDGDWWCSEVERLLEA----DAKAKQAAEQEAARADDDADTVSGYTSTK---SGSPNSASSRKPPKKKRKKLTTARQRTVIE-PPSVISRLAKTMQLMKDSFLVAHLE 324
                 56677777778888888888776.33.34455778999************************..**************************************************************************.....****************.......*********99998..6666665.33.......5778889**********************9....55677777777777777777777776543...333344333333333322222222222222.2456666667777777777776665 PP

>> PF02135.11  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.3   5.8e+03      50      55 ..     456     461 ..     435     485 .. 0.48
   2 !   41.5   8.3     2e-14   9.1e-11       4      75 .]     559     630 ..     556     630 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.3
  PF02135.11  50 grCass 55 
                 ++Ca++
  MMETSP0890-20130614|6231_1 456 SSCARC 461
                 444444 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 2e-14
  PF02135.11   4 qeqlelLlHakkCkkreeakCklkaCkklkkllkHlksCkkkkckvgrCasskqlik....HakeCkdseCpvclc 75 
                 + +l+lL Ha+ C k   ++C + +C+++k+ + Hlk+C  ++ + ++C+ ++++ +    Ha++C++ +Cpv lc
  MMETSP0890-20130614|6231_1 559 NSLLRLLDHATVCDK---SECPVTQCANMKQQILHLKNCGIPN-RHNDCRDCRRIYSllqfHARSCRHPQCPVFLC 630
                 67899**********...78**********************9.8999*****9999999*************877 PP

>> PF01258.12  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.6   3.3e-06     0.015       5      35 ..     456     485 ..     452     486 .. 0.87
   2 ?   -4.4   0.5         3   1.4e+04      27      30 ..     603     606 ..     603     609 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.3e-06
  PF01258.12   5 s.CedCGEpIpeaRlralpgarlCveCqeere 35 
                 s C++CG +I++     +p+  +C++Cq++++
  MMETSP0890-20130614|6231_1 456 SsCARCGIEIGDG--ARSPTHAICRSCQQKAH 485
                 45***********..666***********987 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 3
  PF01258.12  27 CveC 30 
                 C++C
  MMETSP0890-20130614|6231_1 603 CRDC 606
                 7777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       977  (0.0714599); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:02.58
# Mc/sec: 617.67
//
Query:       MMETSP0890-20130614|6234_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.31s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 420.98
//
Query:       MMETSP0890-20130614|6238_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-19   66.8   2.7    6.8e-19   66.8   1.8    1.8  2  PF02953.10 Tim10/DDP family zinc finger
  ------ inclusion threshold ------
      0.014   14.7   3.4      0.019   14.3   2.4    1.2  1  PF05811.8  Eukaryotic protein of unknown function (DUF842)
      0.088   11.5   0.3       0.19   10.4   0.0    1.5  2  PF12818.2  dsDNA viral tegument protein


Domain annotation for each model (and alignments):
>> PF02953.10  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   1.8   1.5e-22   6.8e-19       5      64 ..      19      78 ..      15      83 .. 0.94
   2 ?   -0.9   0.5       0.2   9.3e+02       2       9 ..      84      91 ..      79      99 .. 0.49

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.5e-22
  PF02953.10  5 aqelelanaqelvnkltekCfkkCvtkypgseLskgeesCldrCvekyldvnnlvskrlq 64
                 ++ e++++++l+nk++ +C+kkCv k ++++L+ ge sC+drCv ky+ ++ +v++ l+
  MMETSP0890-20130614|6238_1 19 TAKIEMEMMTDLFNKMSATCHKKCVAKHNEGDLNIGEMSCIDRCVGKYMLAHSKVGEVLK 78
                6789***************************************************99875 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.2
  PF02953.10  2 kqlaqele 9 
                + ++qe++
  MMETSP0890-20130614|6238_1 84 MKQQQEAQ 91
                22233333 PP

>> PF05811.8  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.4   4.1e-06     0.019      17      80 ..      21      87 ..       9     100 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.1e-06
   PF05811.8 17 dldreilrklQkkm.fkCaaeCfedkkasleeve..nCverCsvplakaqqlveselekfqdrLqrc 80
                +++ e++ +l +km   C ++C++++++   ++    C++rC  + + a++ v + l+k ++++++ 
  MMETSP0890-20130614|6238_1 21 KIEMEMMTDLFNKMsATCHKKCVAKHNEGDLNIGemSCIDRCVGKYMLAHSKVGEVLKKVEEQMKQQ 87
                5666666666666525799999988888777775236**********************99999874 PP

>> PF12818.2  dsDNA viral tegument protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.18   8.3e+02     154     172 ..      28      46 ..       7      48 .. 0.62
   2 ?   10.4   0.0   4.1e-05      0.19      32      74 ..      56      98 ..      52     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.18
   PF12818.2 154 lqtlklfsellespcissl 172
                 +   + +s++++++c+ ++
  MMETSP0890-20130614|6238_1  28 TDLFNKMSATCHKKCVAKH 46 
                 4445566666666776665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.1e-05
   PF12818.2 32 gstqasalGlYvtspsesgklseavhrqiaaalkaqaellarl 74
                +s +  ++G Y+++ s++g++ ++v++q++++ +aqa  +a+l
  MMETSP0890-20130614|6238_1 56 MSCIDRCVGKYMLAHSKVGEVLKKVEEQMKQQQEAQAAIAAQL 98
                5677889******************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1377  (0.100717); expected 273.4 (0.02)
Passed bias filter:                      956  (0.0699239); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.46s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 404.63
//
Query:       MMETSP0890-20130614|6232_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-174  580.5   0.0   4.9e-174  580.2   0.0    1.1  1  PF02901.10 Pyruvate formate lyase
    2.4e-41  140.2   0.0    7.9e-41  138.6   0.0    2.0  1  PF01228.16 Glycine radical


Domain annotation for each model (and alignments):
>> PF02901.10  Pyruvate formate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  580.2   0.0  7.1e-178  4.9e-174      24     648 .]      98     657 ..      67     657 .. 0.96

  Alignments for each domain:
  == domain 1    score: 580.2 bits;  conditional E-value: 7.1e-178
                 HHHHHHHHHHHH----.-HHHHHHHHHHHHHHHS----.-TT-S-----SSSTTBB---TTT--HHHHHH.TTTGGG------B--HHHHHHHHHHHHHT----HHHHHHHHS-HHHHHHHTSSSEE---TTT-----B------TTT------HHHHHHHHHHT-SSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHH-----B--BSHHHHHHHHHHH-TT...-.-HHHHHHHHHHHHHHTTTB-----TTHHHH------.--EEEE------------HHHHHHHHHHHHH.--S-SEEEEEE-TT--HHHHHHHHHHHH------EEEEHHHHHHHHHH----HHHHHT---B---B------EE--TTS-EE-HHHHHHHHHT---BTT..C------.--G.G..G--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCTSTT-------TT-----EE-B--B---------HHHHHHHHTTTS-SS-HHHHHHHHHTTTTT-HHHHHHH.HS-------HHHHHHHH---HHHHHHHTT--------B------TTHHHH-- CS
  PF02901.10  24 erarllteseketege.pvdirrakalakilsnkplyI.rddelIvGsqtkkprkraiyPegsvrmlede.ldtlaereadgfeideeekkelreifpywkgktvnegvfdaytdetkkaresgiitvglpdasgrGhiipdyrrvlkyGldglieeikeklakldlddaeaiekaefykaviialeavieyaeryarlaeelaeqetdpkrkaeLkeiaeicgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRldqylypyyekDleeGrl.teeeaqelidclwlklrevrklrseeyaelfaGydp.fqnltvGGqnedGrdavnelsyliLealenl.klpePnlsvrvskklpeeflkkaaevsrdGlgspayenddviipallnkgvsledardyaiaGCvepqipGkeeqffdaarinlakvLelalnnGvdektgkqvgpkt.gdv.t..efksyeelmeafkkqleylvklyvealniidyahdkyapepllsalvddciergkdvgegGarynfsgpqgvGlanvaDSLsAIkklVfdekkvtleelkealaanFegeeelrqlllnaPkYGndddevDeiakelvetfadevkkyknyrggkftaslltissnvpfg 648
                 +++++l+++e e +g+ +vd++++++   i+++ p+y+ +++e+IvG+qt++p+kra+ P+g++r+++++ +++       g+e+d+  +k+++e     + kt+ne+vfd+y++e+++ar+++++t glpda+grG+i++dyrrv++ G+d li+++k+++a  d                    +  + ++e+++r++ee+++q   +k+++ Lk +a+++g+++skpa++++EAiQ+++f++l++vk+++gaa+sl Rld +++ +++ Dl++G l +eeeaqelid+++lklr+v++lr++ey+ lf+G dp +++lt GG++ +G+ +v+++s++++++l+nl + pePnl+v++sk+lp+ f++++a+ s + ++s++yendd++        ++ +d  dy i++Cv++++ G + qff +ar+nl+k+L+++ln+G+de+t kqvgpk+  dv +   ++sy+++ + f+++++++++ly++++n+i+y hd y +e+l  al+d+ ++r  ++g+             G+a+vaDSL+AIk+     k++++++ ++++a++F ++     ++ ++P++G ddd+vD+i+ke+v  f+ ++k++ +yr++++t+sllti+snv++g
  MMETSP0890-20130614|6232_1  98 KKLEELNKIEHE-KGVlDVDTKTVAT---ITAFGPGYLdKENEVIVGLQTDAPLKRAVKPFGGWRVAKSAcEAY-------GYELDPTIEKIFSE-----YTKTHNEAVFDVYSPEMRAARSAKLLT-GLPDAYGRGRIVGDYRRVALFGVDELIKRKKNDFAMSD--------------------Q--AVMTEDVIRQREEISDQ---IKALKALKIMAKSYGFDISKPATNAKEAIQWTYFGYLGTVKSNDGAATSLPRLDLFFDSFIQDDLNSGLLkSEEEAQELIDQFFLKLRMVNHLRTPEYNSLFSG-DPvWATLTFGGCDLQGQPLVCKTSFRFIQTLYNLgRHPEPNLTVLWSKHLPQTFKNFCARASAE-TSSIQYENDDMMKD------IY-GD--DYLISCCVSAMAAGEQTQFF-GARTNLPKLLLYSLNGGCDEVTMKQVGPKFdLDVvDddGYLSYDKVTKHFDANMDWIARLYANTMNVIHYSHDHYFYEALPFALHDTNVHRFISFGA------------SGIATVADSLAAIKY----GKVKPVRN-EQGVATDFIID----TDMAELPRFGTDDDRVDNIVKEVVASFHSKLKQQYTYRNSQPTLSLLTITSNVVYG 657
                 688999999999.5666********9...*****************************************9999.......**************.....***************************.***********************************999....................4..4589*************...*********************************************************************735889*****************************.888*************************************************************.************99......88.99..9*******************.****************************99645533679**********************************************************............***************....********.**********9....77779**************************************************8 PP

>> PF01228.16  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   1.2e-44   7.9e-41       1     106 []     673     779 ..     673     779 .. 0.98

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 1.2e-44
                 ----------------HHHHHHHTTS-TTT-------EEEE-GGGG..------HHHHHHHHHHH.H---EEEEEE--HHHHHHHHH-GGGGTT-EEE----EEEGG CS
  PF01228.16   1 vapginpmegrdkegplaslasvaklpyeseldgisvnlkatpdalgkedeerienlatlldgyf.eggqhlnvnvlsretLldAqehPekypqLtiRVsGYavrfn 106
                 ++pg np++grd+ g+l sl+svak+py s++dgis+++++tp++lgk++e r++nl++lldgyf +gg+hlnvn+++re+L+dA+ hPekyp+L++R+sGYav+f+
  MMETSP0890-20130614|6232_1 673 FSPGSNPYHGRDTAGALSSLNSVAKIPYMSCQDGISNTFSITPKTLGKTSEARQNNLVSLLDGYFaQGGHHLNVNCMDREMLIDAMDHPEKYPNLVVRISGYAVNFM 779
                 799**************************************************************88**************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.44s 00:00:01.64 Elapsed: 00:00:00.84
# Mc/sec: 2276.54
//
Query:       MMETSP0890-20130614|6240_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   31.5   0.2    4.7e-07   30.1   0.1    1.7  1  PF04969.11 CS domain
    0.00077   19.0   0.0     0.0015   18.1   0.0    1.5  1  PF12957.2  Domain of unknown function (DUF3846)
  ------ inclusion threshold ------
       0.18   11.5   0.4       0.47   10.1   0.3    1.6  1  PF13124.1  Protein of unknown function (DUF3963)


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1     1e-10   4.7e-07       3      78 .]     232     316 ..     231     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1e-10
                 -EEEEETTEEEEEEE----..---S-EEEEE----EEEEE---....EEE---BSS-EEEE.EEEEEE---.........EEEEEEEE CS
  PF04969.11   3 ydWyQtleeVtitipvkgv..ikkedvkveikkkslkvsikgpgekeyllegeLfgeIdpe.esswkiedt.........kieitLkK 78 
                 ++W+Qt+e+++i+ip++++   +k+++++ ++++ ++v       ++ l++ +L+++Id e  +sw++ +          +++itL+K
  MMETSP0890-20130614|6240_1 232 FSWTQTSEDLEIRIPLPEDiqFPKRQINIALNRQAITVIAIT---NKLLVSPKLYAPIDLEvGYSWTLDKEicendniktSLVITLSK 316
                 68*****************999****************9966...88************99447888877666666666666666655 PP

>> PF12957.2  Domain of unknown function (DUF3846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.2e-07    0.0015      37      85 ..     107     157 ..      76     169 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.2e-07
   PF12957.2  37 ddgvslvvneeGklkglplNraata.leeegdlqdpivGdvvllg.ededg 85 
                 + ++s++++  +++k lplN++a+  + + g+ ++  +Gd ++    d+d 
  MMETSP0890-20130614|6240_1 107 PYAISIYCDAKAQAKSLPLNPRACGlAAACGAKNQQFRGDLFVSRyFDDDE 157
                 5689*********************99999************999666654 PP

>> PF13124.1  Protein of unknown function (DUF3963)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3    0.0001      0.47       7      21 ..     147     161 ..     146     163 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
   PF13124.1   7 iFIerYFdDIQKWiR 21 
                  F+ rYFdD   W+R
  MMETSP0890-20130614|6240_1 147 LFVSRYFDDDEQWLR 161
                 59***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1150.93
//
Query:       MMETSP0890-20130614|6241_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-15   55.6   0.0    6.8e-15   55.2   0.0    1.2  1  PF00106.20 short chain dehydrogenase
    7.1e-08   32.4   0.1    9.5e-08   32.0   0.1    1.2  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0     1e-18   6.8e-15      17     166 ..       2     161 ..       1     162 [. 0.92

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1e-18
                 HHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH--..-EEEEEE--TT...SHHHHHHHHHHHHHH----SEEEEE---TT..-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH........HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
  PF00106.20  17 ArwLveegarhlvlvsrredapgaaeliaelealg..aevtvvacDva...drdalaallaeirkalgpldgvvhnagvld..dgpleeltperlervlapkvtgawllheltld........adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                 A +L+++ + +++l+sr+  + ++ ++ +e+ea+   ++v++v +D a   d++++++l ++i+  +  + ++++n g++   ++  +el+ ++  + +a+++++++ l++l+l+        ++ ga++++SS+ag+  sp  a Y+ ak ++ ++++s++ae+
  MMETSP0890-20130614|6241_1   2 AFELAKQ-GLKILLISRT--ESKLIQVKEEIEAKVkdVQVRYVSLDFAgglDKHKISTLAQAIK--DLDIGILINNVGMSYpfTKYYHELNMNECSDLVALNLESTMILTKLVLGdsscgmiaRKRGAIINTSSAAGTQISPLLAGYSGAKGGIVMFSKSLAAEL 161
                 7789999.6799******..99999999****77767999999***765559999999999999..779**********9889999*****************************9999999888*************************************997 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.1   1.4e-11   9.5e-08      15     176 ..       4     170 ..       1     185 [. 0.84

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.4e-11
                 HHHH---EEEE---HH------------------.......----TT...-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG......GB-----EEEEEE-------------------THHHHHHHHHH----S---EE CS
   PF13561.1  15 alaeaGaevilttwvpaklkkkvqelakelpadv.......vplDvt...seedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpk....nlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvn 176
                  la++G +++l +++++kl +  +e+ ++    v       v lD++   +++++s+la+++k+    +i il++ +++s +   +k ++e++ ++ ++ +  +  s + l+k +l      ++  + g+i+ +s  a  ++ p   g+s aK  +    ++lA el +k gi v 
  MMETSP0890-20130614|6241_1   4 ELAKQGLKILLISRTESKLIQVKEEIEAK----VkdvqvryVSLDFAgglDKHKISTLAQAIKDL---DIGILINNVGMSYP--FTKYYHELNMNECSDLVALNLESTMILTKLVLGDsscgMIARKRGAIINTSSAAGTQISPLLAGYSGAKGGIVMFSKSLAAELKPKFGIDVQ 170
                 6899***********99754333344333....22223366999*99776677799999988877...599***********..*****************************998752333688999********************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.60
# Mc/sec: 1058.39
//
Query:       MMETSP0890-20130614|6249_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-30  104.7   0.0    4.4e-30  104.6   0.0    1.0  1  PF00069.20 Protein kinase domain
    1.7e-27   96.0   0.0    1.8e-27   95.9   0.0    1.0  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.11   11.3   0.1       0.17   10.8   0.1    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   9.6e-34   4.4e-30     112     221 ..       2     116 ..       1     119 [] 0.89

  Alignments for each domain:
  == domain 1    score: 104.6 bits;  conditional E-value: 9.6e-34
                 HHHHHTCEE-S--SGGGEEEETT--EEE------EEE.....CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST.HHHHHHHHHCCCHHTTS-- CS
  PF00069.20 112 eylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.....eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge.seedqleliekilkkklee 221
                 eyl+s+++ HrDLK++N+Lld+k+++ki+DFGla++      ++s ++ +  vgt  +mAPEvl+ a++ ++k+Dv+s++++l+e+++++lp++g  +++ ++++  k+ +++l+ 
  MMETSP0890-20130614|6249_1   2 EYLYSRHVQHRDLKTSNVLLDHKSSCKISDFGLARCEelqthTSSTTRRHGAVGTLPFMAPEVLE-ASGFSEKSDVYSYAMTLVEIVSRTLPWKGLtEKQIMMQVAMKKNHPELPA 116
                 7**********************************989999888889999***************.****************************9945555666666666665554 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0     4e-31   1.8e-27     117     228 ..       2     116 ..       1     119 [] 0.88

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 4e-31
                 HHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES...TTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---T CS
  PF07714.12 117 eyLeskklvHrdLaarNvLleeekvvkisDfGLardi...ekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpe 228
                 eyL s+++ HrdL + NvLl++++ +kisDfGLar     +++++++++++a   + +mapE+l+++ f++ksDv+s+ ++l Ei+++   p++gl++++++ ++  ++++ e p+
  MMETSP0890-20130614|6249_1   2 EYLYSRHVQHRDLKTSNVLLDHKSSCKISDFGLARCEelqTHTSSTTRRHGAVGTLPFMAPEVLEASGFSEKSDVYSYAMTLVEIVSRT-LPWKGLTEKQIMMQVaMKKNHPELPA 116
                 8**********************************8866566777788999999*********************************66.******99999999855555555555 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.7e-05      0.17     136     167 ..       6      34 ..       2      51 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.7e-05
   PF06293.9 136 ragvnHtdlnahnilldeeeekakvwliDldk 167
                 +++v+H+dl   n+lld +     + + D+  
  MMETSP0890-20130614|6249_1   6 SRHVQHRDLKTSNVLLDHKS---SCKISDFGL 34 
                 799***************98...777777643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 491.67
//
Query:       MMETSP0890-20130614|6254_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.053   12.9   6.1       0.12   11.7   4.2    1.7  2  PF09577.5  Sporulation protein YpjB (SpoYpjB)
      0.068   12.2   1.0        0.1   11.6   0.7    1.2  1  PF00318.15 Ribosomal protein S2
       0.19   10.9   1.0       0.64    9.2   0.4    2.1  2  PF00634.13 BRCA2 repeat
        1.2    8.8   5.2          3    7.5   3.4    1.9  1  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
        4.8    6.5   9.5        6.1    6.2   0.0    3.7  4  PF01997.11 Translin family


Domain annotation for each model (and alignments):
>> PF09577.5  Sporulation protein YpjB (SpoYpjB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.2   4.4e-05      0.12      44     134 ..      30     127 ..       8     185 .. 0.85
   2 ?   -2.0   0.0      0.69   1.9e+03     119     136 ..     176     193 ..     154     198 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.4e-05
   PF09577.5  44 e.ltaaelRqvtlayekavkaleaedvseeekl....ravtqfrlvvDA..iesksePLWselekpvmeafsalkkavekedseafkeklneflslyd 134
                   +++++l++v +  +++ +al+++++++++ +    +av++f   +D   +++k +PL    ++++   + +++++ ++++ ++++ +l+++ s ++
  MMETSP0890-20130614|6254_1  30 AcVSEENLKKVRIQLKNVAQALHQAQIDHQNEMtvleKAVAAFEERIDSesLQKKWKPLLDTEKESIDRRVRHIEQETKQQEYNELNLQLERLESSFQ 127
                 348999*************************9955555799998888862268999*******************************99999988875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.69
   PF09577.5 119 seafkeklneflslydli 136
                 +++f++kl++++ l+d++
  MMETSP0890-20130614|6254_1 176 ERDFQAKLRTIMALFDVL 193
                 578999999999999886 PP

>> PF00318.15  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   3.7e-05       0.1      38     135 ..      36     127 ..      29     139 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHCCCHH.-GGEEEE--SCCHHHHHHHHHHC---EEE-SS-----GTTCCHCCCHHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHH. CS
  PF00318.15  38 tlkaLkralkvvkelakkkgkilfvgtkkqaqkivekaakrtgqsyvnnrWlgGtLTNwktikkslkkleklekleklskkeklklkkelkkleksle 135
                  lk+ + +lk v++  ++  +i   +  +  +k+v+ + +r+++ +++++W + + T ++ i ++++++e     ++++++e ++l+ +l++le s++
  MMETSP0890-20130614|6254_1  36 NLKKVRIQLKNVAQALHQ-AQIDHQNEMTVLEKAVAAFEERIDSESLQKKWKPLLDTEKESIDRRVRHIE-----QETKQQEYNELNLQLERLESSFQ 127
                 444444444545444443.46666666555589*******************9999*******9999999.....47888999999999999999996 PP

>> PF00634.13  BRCA2 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00023      0.64      17      27 ..      31      41 ..      28      41 .. 0.95
   2 ?   -2.5   0.0         1   2.8e+03       5      10 ..     232     237 ..     229     237 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00023
  PF00634.13 17 sVSeeSLkKak 27
                +VSee+LkK++
  MMETSP0890-20130614|6254_1 31 CVSEENLKKVR 41
                9********98 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1
  PF00634.13   5 flgFqT 10 
                 +++FqT
  MMETSP0890-20130614|6254_1 232 PPSFQT 237
                 89***9 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.4    0.0011         3      21     100 ..      36     125 ..      31     171 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0011
   PF04513.7  21 vLnairlqnvqilaqlatlldaietqLnalsedlksllaeldt.........rldtlltnLtdalnalq.dtlrneLtnlnsiltnLlss 100
                  L+ +r q+ +++ +l ++  + +++++ l++++ +  + +d+          ldt  + +++ + +++ +t ++e + ln +l  L ss
  MMETSP0890-20130614|6254_1  36 NLKKVRIQLKNVAQALHQAQIDHQNEMTVLEKAVAAFEERIDSeslqkkwkpLLDTEKESIDRRVRHIEqETKQQEYNELNLQLERLESS 125
                 68999************9999999999999999999988888888888999899999999********978889999*******999998 PP

>> PF01997.11  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0022       6.1     174     197 ..       5      28 ..       2      31 .. 0.92
   2 ?    0.3   0.2      0.15     4e+02      12      40 ..      38      68 ..      33      89 .. 0.52
   3 ?    2.2   0.3     0.039   1.1e+02      23      52 ..      98     127 ..      78     150 .. 0.76
   4 ?    0.7   0.0      0.11   3.1e+02     144     166 ..     196     217 ..     167     230 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0022
                 -HHHHHHHHHHHHHHHHHHHC--- CS
  PF01997.11 174 lrkKldvlrqsvekvervvydlsv 197
                 +r+Kl+ l+ sve ve++++d++v
  MMETSP0890-20130614|6254_1   5 FRRKLERLEASVEAVESDAVDAEV 28 
                 79*******************988 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHCCT-GG..---HHHHHHH CS
  PF01997.11 12 rditalskkiifavhrida..eeaeeiikea 40
                +++ ++ k++  a+h+++   +++  ++++a
  MMETSP0890-20130614|6254_1 38 KKVRIQLKNVAQALHQAQIdhQNEMTVLEKA 68
                4455555666566666555222222333333 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.039
                 HHCCT-GG---HHHHHHHHHHHHHHHHHS- CS
  PF01997.11  23 favhridaeeaeeiikeakerlkklsella 52 
                 + v++i++e+++++++e++ +l++l++ ++
  MMETSP0890-20130614|6254_1  98 RRVRHIEQETKQQEYNELNLQLERLESSFQ 127
                 348999999999999999999999999988 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.11
                 HHHHHHHH--------TTS--.. CS
  PF01997.11 144 kpleileflrelyagfellnlpr 166
                 +++eil+fl ++++ f+ +   +
  MMETSP0890-20130614|6254_1 196 SEEEILTFLWQIEEDFMPFRA-N 217
                 3899*************9976.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1270  (0.0928906); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 863.30
//
Query:       MMETSP0890-20130614|6250_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   13.5   1.0        0.2   11.8   0.1    2.3  2  PF12874.2  Zinc-finger of C2H2 type
      0.083   12.9   0.6       0.41   10.7   0.2    2.3  2  PF12171.3  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> PF12874.2  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.9e-05       0.2       2      17 ..      36      51 ..      35      54 .. 0.84
   2 ?   -1.7   0.0      0.49   3.4e+03       7      17 ..     306     316 ..     306     317 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.9e-05
                EETTTTEE-SSHHHHH CS
   PF12874.2  2 yCelCnvtftSesqlk 17
                 Ce+C++ f++e  l 
  MMETSP0890-20130614|6250_1 36 SCEVCKKWFKDEVELF 51
                5**********98775 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.49
                 TEE-SSHHHHH CS
   PF12874.2   7 nvtftSesqlk 17 
                 n++f+++ +l 
  MMETSP0890-20130614|6250_1 306 NIHFKDQVSLS 316
                 89*****9986 PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2     6e-05      0.41       4      16 ..      37      49 ..      35      55 .. 0.85
   2 ?   -2.0   0.0       0.6   4.1e+03       7      16 ..     305     314 ..     304     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6e-05
                -TTT--B-SSHHH CS
   PF12171.3  4 CvaCdkyFksenq 16
                C++C k+Fk+e +
  MMETSP0890-20130614|6250_1 37 CEVCKKWFKDEVE 49
                **********965 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.6
                 T--B-SSHHH CS
   PF12171.3   7 CdkyFksenq 16 
                  +++Fk++ +
  MMETSP0890-20130614|6250_1 305 TNIHFKDQVS 314
                 699***9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.85
# Mc/sec: 1426.54
//
Query:       MMETSP0890-20130614|6255_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-10   39.4   0.1      5e-10   39.0   0.0    1.1  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.7e-14     5e-10     122     199 ..      15     126 ..       3     128 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 3.7e-14
                 ETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH....................................SCCHHHHHHHHHHHHTTSSEEEE-SSS CS
  PF00149.23 122 sglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi..................................gggelfgpdalekllekygvdlvlrGHeH 199
                 +   ++++ ++++e+   f+ lpl a +++++++ H++ls+s+++ d i                                  g+g+ fg d +e +l  ++++ ++r+H+ 
  MMETSP0890-20130614|6255_1  15 NAYVKYGNANVWKEFTSLFDTLPLSAAIENQVFCPHAGLSPSLDTIDHIqalhrfqeiphegpmcdlvwsdpdercgwgisprGAGYTFGADITEQFLTTNNFKFIVRAHQL 126
                 5678999***************************************999*************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.60
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|6248_1  [L=1820]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-82  274.9   0.0      1e-81  274.3   0.0    1.2  1  PF00501.23 AMP-binding enzyme
      4e-10   39.6   0.0      1e-09   38.4   0.0    1.8  1  PF00550.20 Phosphopantetheine attachment site
    3.4e-05   23.0  12.7        2.4    7.7   0.0    7.4  7  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.3   0.0   2.2e-85     1e-81      21     417 ..     189     615 ..     180     616 .. 0.91

  Alignments for each domain:
  == domain 1    score: 274.3 bits;  conditional E-value: 2.2e-85
                 --TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTT.ECC..............S-E..ECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-TTCCHHCTTTHHHHTTT-EEEEESSCCTT-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.......CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH...CCH---EBSTTTEEEEEBSTT-BEE-S----EEEESTTS--B-TT-HHHHHHHBCCSTT...............EEE---EEEE-TT--EEEE--GG.GEEE----EEEHHHHHHHHHTSTTEEEEE CS
  PF00501.23  21 vkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivr.tdk..............eed..svgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllplhfdgsilellaplllGatvvlvspedlkdpalllddiekykvtvlalvptvlelllkaiek.......kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdee..tkpgsiGrplpgvevkivdeegkevppgevGEllirgpgvakGYlkdpeltaeafdedgw...............lyrTGDlgrldedGyleiiGRkk.dqikirGeniepgeiEsallehpgvaeaa 417
                 + p++ Va+ll + p +v+a++a+l aG+ yvp+ p++p er+  i+nd++++v++t+ ++ +   +   ++  +     ++ +d+              +++     + ++ +e+++  k+ ++ ++    p +l+yi yTSGtTGkPKGVm++hr+l+  +a+++++++l ++d++l+ + + f  s +el+++ ++Ga++v+++ + +k ++ ++d++++   tv + vp++l +l + + +       +    +++rl + +ge+l+p+++e + +af+++++ n+YG+tE+ +  t++++++e+  +++ +iG p+++v v+++d++gk vppg+ GEl ++ p  a+GY++ p   ++a +++++               ly TGDl+r+++ ++l + GR+  dqik+rG++ie+ ++ +al++hp v+ aa
  MMETSP0890-20130614|6248_1 189 IHPDEPVALLLRREPSMVVAIYAVLLAGGCYVPIEPDYPTERILTIINDAGCRVVLTQRRFFSVFTSLFNRQRLV----FCDdGDPrritihqglihpdhSNQdaVLARYDDINEENLWLKARDASKQTI--PTSLVYIFYTSGTTGKPKGVMVEHRGLVRRIAWFQRKYPLQNNDAMLLKTTYTFGISEWELFWAPTCGAAIVIARHDGHKITSYIADLMSA--TTVCCFVPSALLALSELVLAdttddtrHPDAYKNVRLAIACGEALTPATIEPFFQAFPNAVLCNVYGPTEADM--TYYELSQENyqRRAPPIGLPMDNVVVYLLDPHGKSVPPGALGELHFGAPAPARGYVGLPN--NKAWIKNPYlhecqknakiavcpmLYATGDLARWLPTNFLGFFGRVNgDQIKLRGFRIELDDVANALQSHPRVSRAA 615
                 57999**********************************************************999888877643....333333377899999999998444454455555555555555555555555..78****************************************************************************9999999999965..89**************999999************************************************986..66666666666************************************************7..9*************************************************************************998 PP

>> PF00550.20  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.2e-13     1e-09       2      66 ..     723     788 ..     722     789 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.2e-13
  PF00550.20   2 klleivaevlg.ldpdeidldtdlfelGlDSllaveliarleeefgveipvedlfelptlaelaay 66 
                 ++ ++++++lg + +++i++++d+ +lG++Slla +++ +l+  ++v++p + ++ +pt+++la y
  MMETSP0890-20130614|6248_1 723 AIETVWQAMLGmDSATPISVNADFVSLGGNSLLAGRVTTKLRHVLNVQLPGTAVYMYPTISALATY 788
                 68899*******999************************************************987 PP

>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.43     2e+03      19      26 ..     125     132 ..     124     133 .. 0.56
   2 !    3.8   0.1    0.0086        39      19      34 ..     949     964 ..     947     966 .. 0.63
   3 ?    0.2   0.0      0.12   5.5e+02      16      34 ..     972     984 ..     968     986 .. 0.56
   4 !    5.2   0.1    0.0032        15      21      35 ..    1202    1216 ..    1201    1217 .. 0.90
   5 !    6.2   0.0    0.0015       6.9       2      29 ..    1230    1257 ..    1229    1260 .. 0.84
   6 ?   -0.2   0.1      0.16   7.5e+02      14      26 ..    1373    1385 ..    1371    1386 .. 0.74
   7 !    7.7   0.0   0.00053       2.4      19      34 ..    1478    1493 ..    1476    1509 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.43
                 SEBE-TTE CS
  PF00132.19  19 gviIGdnv 26 
                  + IG+n+
  MMETSP0890-20130614|6248_1 125 FCLIGANC 132
                 56666666 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0086
                 SEBE-TTEEE-TTEEE CS
  PF00132.19  19 gviIGdnviIgagvvi 34 
                 g+ IG++v+I +++ i
  MMETSP0890-20130614|6248_1 949 GADIGSGVTIESHANI 964
                 4556777777666665 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.12
                 EESSEBE-TTEEE-TTEEE CS
  PF00132.19  16 igggviIGdnviIgagvvi 34 
                 +++g++IG++++      +
  MMETSP0890-20130614|6248_1 972 LCDGAHIGRHSR------V 984
                 455555555554......4 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0032
                  BE-TTEEE-TTEEEE CS
  PF00132.19   21 iIGdnviIgagvvig 35  
                  +IGd v+ g++vv++
  MMETSP0890-20130614|6248_1 1202 EIGDEVVFGSCVVLA 1216
                  8************86 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.0015
                  EEE-TTEEE-TTEEEESSEBE-TTEEE- CS
  PF00132.19    2 tvIGenvlIgpnvvigggviIGdnviIg 29  
                  ++I  ++ +  ++v+++gvi+ ++++ g
  MMETSP0890-20130614|6248_1 1230 IQIQRGANVLDHSVLLPGVIVEAGAVTG 1257
                  5788999999999999999999999876 PP

  == domain 6    score: -0.2 bits;  conditional E-value: 0.16
                  EEEESSEBE-TTE CS
  PF00132.19   14 vvigggviIGdnv 26  
                  v+i+  ++IG ++
  MMETSP0890-20130614|6248_1 1373 VIILKFCVIGTYT 1385
                  6788888888776 PP

  == domain 7    score: 7.7 bits;  conditional E-value: 0.00053
                  SEBE-TTEEE-TTEEE CS
  PF00132.19   19 gviIGdnviIgagvvi 34  
                  +v+IG+++  ga++v+
  MMETSP0890-20130614|6248_1 1478 PVTIGEGCDMGANAVL 1493
                  7999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1820 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.23u 0.38s 00:00:02.61 Elapsed: 00:00:01.86
# Mc/sec: 2344.82
//
Query:       MMETSP0890-20130614|6257_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.85
# Mc/sec: 967.00
//
Query:       MMETSP0890-20130614|6256_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-154  513.6   0.0   4.3e-154  513.3   0.0    1.1  1  PF00330.15 Aconitase family (aconitate hydratase)
    7.9e-38  129.4   0.0    1.6e-37  128.4   0.0    1.6  1  PF00694.14 Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> PF00330.15  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.3   0.0  6.3e-158  4.3e-154      47     465 .]       2     427 ..       1     427 [. 0.98

  Alignments for each domain:
  == domain 1    score: 513.3 bits;  conditional E-value: 6.3e-158
                 ----S-SS-.EEEE--SS--B-----H.......HHHHHHHHTHHHHHHHHH---------B----...--HHHHHHHH.T------EE---TTTT--------B------HHHHHH----EEEE---EE-EEEE--------HHHHHHHH------------EEEEE----TTS-----HHHHH--------EEE----HHHHHHHHH---HHHHHHHHHH...GGGGS-------SS--EEETTT---EEB---STT--EEGGG---HHH.................H----......-SEEE--B--CCC-STTT---HHHHHHHHHT..-----SS---B----HHHHHHHHH---HHHHHH----B--S--------B---SS-----EEEEESSS-------SS-TTEEEE--HHHHHHHHH-- CS
  PF00330.15  47 agravrrvdkttltiDHsietqkrkek.......dlkieeernkeqvefLeknvkkfgvklvkpgst..GIvHqivlEngltlpgltlvgtDSHTatagglGalafGvGgseaedvlagqplelkkpkvlgikltGklkegitakDlilkviglltvkggtgkvvEflGegidslslegraticNmaiEiGAtaglfpvdeetlkYlkatgraekaeeldeavakaktlkadkdakydkvveldlsdvepsvtgpttPddavslselveeaksvadevkkakkeraleyvelkpdtqlkelkvdvalIgSCTNssiedlrraasivkkkaa..kklkpkvkalvvPGSevvkatleregldkifkeaGfellengCstCigqndrpDqlkeeketivsssNRNFegRqdanvrthflaSPalvaAaaiaG 465
                 a+r+vrr d+t +t DH+++t++r++        + + e+  +++qv +Leknv+kfg+++++++++  GIvH++++E+g+tlpg+t+v++DSHTat+g++G+lafG+G+se+e+vla+q++ ++kp ++ ++++G l++g+t+kDl+l +ig ++ +ggtgk +Ef G+ +++ls+e+r++++NmaiE+GA+agl+++de t++Ylk+++ a+k+e +d+a++++k+l++d+dakyd ++++d+ +v p+ t++t+P+d+v+++++v+ + +  de +++++ ral+y++l+p++ l+++ +d+++IgSCTN++iedlr+aa+i++ +    k ++++  a++vPGS++vk ++e+egldkif  aGfe++e+gCs+C+++n  pD+lk  +++++s+sNRNFegRq++ +rth l+SP+ ++A a+ G
  MMETSP0890-20130614|6256_1   2 AQRPVRRPDCTLVTADHNVPTTSRADYhggtvsvESFLEDVASRTQVLTLEKNVQKFGLTYFGMKDArqGIVHVVGPEQGFTLPGATIVCGDSHTATHGAFGSLAFGIGTSEVEHVLATQTILQQKPGTMLVNINGDLAPGVTSKDLVLFLIGQIGAAGGTGKAIEFGGNTMSKLSMEARMSMSNMAIEAGARAGLVAPDEITFAYLKDRPMAPKGELWDQALKYWKSLVSDPDAKYDITIDIDAAQVPPMATWGTSPQDVVPINANVPFIDDAIDENRANAMRRALSYMGLEPGQALSQIPIDYVFIGSCTNGRIEDLRAAAQIIQSAGPnaKVANNIEAAIIVPGSGLVKLQAEQEGLDKIFIHAGFEWREPGCSMCLAMN--PDKLKP-QQRCASTSNRNFEGRQGSGGRTH-LVSPPSAVACALKG 427
                 6799********************98899999888889999************************9999*****************************************************************************************************************************************************************************************************************************************************************99865646667777899****************************************..******.***********************.***********988 PP

>> PF00694.14  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   2.4e-41   1.6e-37       7     130 ..     505     631 ..     499     632 .. 0.91

  Alignments for each domain:
  == domain 1    score: 128.4 bits;  conditional E-value: 2.4e-41
                 B-----HHHHS----GGGG---HHHHGGGTT---BBTTTS-BS----TTT----....-HHHHHHHHHH----EEEE----B------THHHHHHHH----EEEES-B-HHHHHHHHH---EEEEESS CS
  PF00694.14   7 ekGvatkdeksnvdtdlkipkqflgtianiglgnklfeekrankttnlddgeke....dvvdaaekykkegakivviagknfGeGSSRehAalalldlGikaviakSFarIfennliknglLplelke 130
                 ++ +a++++++nvdtd++ipk+ l+t++++glg + f e r+++ +++  g k+    d+v++  ++  ++aki++++ +nfG+GSSRehA++a++d G k++ia+SFa+If+nn++kng+Lp+ l++
  MMETSP0890-20130614|6256_1 505 KNALAAPLDIQNVDTDMIIPKEYLKTVKRTGLGFAAFAELRYENPDDVARGVKPiekpDFVLNRAPWAGKNAKILICG-ENFGCGSSREHAPWAIKDAGLKVIIAPSFADIFYNNCFKNGMLPVVLPR 631
                 566889***********************************99877766654434444********************.*********************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:01.48
# Mc/sec: 1190.08
//
Query:       MMETSP0890-20130614|6261_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-20   70.5   0.0    1.3e-19   69.6   0.0    1.5  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   9.1e-24   1.3e-19       1      57 [.     117     177 ..     117     178 .. 0.90

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 9.1e-24
   PF08373.5   1 ieidGpthFyrns.gvll...gktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57 
                 ie+dGpthF++ s g  +   g tk+K r+L++lGw +i+ipyf+Wn l++   +  Yl++
  MMETSP0890-20130614|6261_1 117 IEVDGPTHFLKFSkGTQRvenGRTKFKSRLLRQLGWTLIHIPYFDWNALNDAVAQDSYLQS 177
                 9********666655555677****************************99999999**87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.34s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 592.61
//
Query:       MMETSP0890-20130614|6260_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   18.7   0.5     0.0026   17.3   0.1    1.9  2  PF07347.7 NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
  ------ inclusion threshold ------
      0.043   13.5   0.6       0.15   11.8   0.1    2.2  3  PF08130.6 Type A lantibiotic family


Domain annotation for each model (and alignments):
>> PF07347.7  NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.8e-07    0.0026      30      86 ..      78     135 ..      60     144 .. 0.83
   2 ?   -1.8   0.0      0.34   2.3e+03      75      96 ..     193     215 ..     163     216 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.8e-07
   PF07347.7  30 tqPppklPdGp.shklsanyYvtRDaRrevkppidivssqkallaekeaekaavkakk 86 
                   P p++P  + s+ +++ +Y+ RD+ r+  p  ++++++k+l+  + +++++ k+k+
  MMETSP0890-20130614|6260_1  78 SRPAPRVPRVSnSDNVFDIKYYSRDTTRNGRPKLVVFKNKKNLSESEIKAIEDGKTKE 135
                 679*****8652689****************************998888887766655 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.34
   PF07347.7  75 keaekaavka.kkavtPgklyaw 96 
                 +e  +a+ +a    +tPg+ y+w
  MMETSP0890-20130614|6260_1 193 QEDIIAECQAkGIPITPGRPYKW 215
                 33333444443455677777776 PP

>> PF08130.6  Type A lantibiotic family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.61   4.2e+03      12      23 ..      16      30 ..      14      35 .. 0.62
   2 ?   -2.3   0.0      0.57   3.9e+03       2      11 ..      88      97 ..      87     107 .. 0.66
   3 ?   11.8   0.1   2.1e-05      0.15       2      28 ..     115     141 ..     114     155 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.61
   PF08130.6 12 ikketse...ntdeL 23
                ikk+ s    n de+
  MMETSP0890-20130614|6260_1 16 IKKDVSSrswNADEI 30
                888865423366766 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.57
   PF08130.6  2 knkkdLFDLe 11
                 n  ++FD+ 
  MMETSP0890-20130614|6260_1 88 SNSDNVFDIK 97
                5888999986 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 2.1e-05
   PF08130.6   2 knkkdLFDLeikketsentdeLeaqsl 28 
                 knkk+L + eik  +   t eLea ++
  MMETSP0890-20130614|6260_1 115 KNKKNLSESEIKAIEDGKTKELEASTA 141
                 9***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.59
# Mc/sec: 917.93
//
Query:       MMETSP0890-20130614|6258_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1333.25
//
Query:       MMETSP0890-20130614|6265_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-13   49.9   0.9    5.8e-13   48.7   0.1    2.0  2  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.036   13.7   0.0       0.21   11.3   0.0    2.1  2  PF13545.1  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   8.5e-17   5.8e-13       2      68 ..     109     170 ..     108     234 .. 0.84
   2 ?   -1.8   0.0      0.46   3.1e+03      72      88 ..     309     325 ..     299     331 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 8.5e-17
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkde 68 
                 Fl++l +++e+  + ++i+w++   ++++ d+++++k  Lp y+kh+n+aSF RQLn +g+h+   +
  MMETSP0890-20130614|6265_1 109 FLRQLKKMIEE--VPNVIQWDNG--NIIIPDPKQLEK-TLPLYYKHNNYASFQRQLNNFGYHRKFAH 170
                 9999****985..999****977..89*********9.***********************987555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.46
  PF00447.12  72 skkkekiweFkhksFkk 88 
                  ++++++++F+++sF+ 
  MMETSP0890-20130614|6265_1 309 VSDRQQVQSFNNQSFHP 325
                 33457888999999865 PP

>> PF13545.1  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.18   1.2e+03      61      75 ..      27      41 ..      23      42 .. 0.88
   2 ?   11.3   0.0     3e-05      0.21      56      75 ..     122     141 ..     109     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.18
   PF13545.1 61 srrririldieaLke 75
                s+++i+i+ ++ Lke
  MMETSP0890-20130614|6265_1 27 SDDKITIKSVSSLKE 41
                5789*********98 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 3e-05
   PF13545.1  56 glIelsrrririldieaLke 75 
                 ++I++ +++i+i+d+++L++
  MMETSP0890-20130614|6265_1 122 NVIQWDNGNIIIPDPKQLEK 141
                 89****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.55s 00:00:01.19 Elapsed: 00:00:00.99
# Mc/sec: 1111.04
//
Query:       MMETSP0890-20130614|6267_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-60  204.4   0.0    1.6e-60  204.0   0.0    1.1  1  PF01564.12 Spermine/spermidine synthase
     0.0011   18.9   0.0     0.0021   17.9   0.0    1.5  1  PF13659.1  Methyltransferase domain
     0.0026   18.1   0.0     0.0049   17.3   0.0    1.4  1  PF12847.2  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0   0.0   3.4e-64   1.6e-60      12     236 ..      93     321 ..      71     329 .. 0.96

  Alignments for each domain:
  == domain 1    score: 204.0 bits;  conditional E-value: 3.4e-64
                 ---EEEEEEEEEEEEEEESSSEEEEEEES----EEEE---EEEETTTCHHHHHHHHHHHHHHSS..S--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--..TT-TTEEEEE----HHHHTCSS.-BSEEEESSS-----GGGCCSHHHHHHHHHHB-----EEEE---TTTSHHHHHHHHHHHHHHSSCEEEEEE--TTS-SS-EEEEEEE CS
  PF01564.12  12 pglgveykvekvlyeekskiqeieifesspfGkillLdgrvqltekdefaykemivhvplllhp..npkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslais..lndervkvvigdgfkflkaylvrkfDvvivdstdpvgpaenlFskefydllkkalkedGvivlQakspelekelvinvdksgkqvfaqvepyavlvptylsgminfvves 236
                 +g+  + ++++v+ e +s +q+i i+++ + G+ l+Ldg +q++ekde +y+em++hvp+l h+  +  ++LiiGGgDGg++re++k++ +e+ ++v+iDq v+d ++kflp +      +d+r++++ +d+ +f++ ++ + +D +i d +dp+gp ++l++  fy+ +k+ l+ +G +v+Q +s+++ + ++ +v   ++  f++v+py + +  y++g +n+++++
  MMETSP0890-20130614|6267_1  93 KGVVWSADIKNVIMEVQSAYQQISIVDTVSLGRALILDGALQCAEKDEAGYHEMMTHVPMLRHKagKISDILIIGGGDGGIAREILKYKYFERLDMVEIDQVVVDTCQKFLPRVFPAsiAQDDRFHLFYEDAATFVTSAESQSYDLIIIDASDPIGPGASLYTPTFYAEIKRLLRREGAVVAQCGSFFYLPCVFRTVYHGLSAHFPVVMPYSCFTAVYPGGSWNLAIAT 321
                 67777899********************************************************77778********************************************9777799********************************************************************************************************99876 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.6e-07    0.0021       4     113 ..     163     274 ..     161     278 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.6e-07
   PF13659.1   4 vldpgcGsGtfllaalell.aalllgvEldpraaalaarnlar.....aglaervrvrqgdlrdlaellragsfdlvvtnp..PygpragaraalrdlydafleaaarllkpgGvlvl 113
                 +l +g G G ++   l++    +l  vE+d   ++ +++ l+r      + ++r+++++ d++++++ + ++s+dl++++   P gp a         +  f +++ rll++ G++v 
  MMETSP0890-20130614|6267_1 163 ILIIGGGDGGIAREILKYKyFERLDMVEIDQVVVDTCQKFLPRvfpasIAQDDRFHLFYEDAATFVTSAESQSYDLIIIDAsdPIGPGA------SLYTPTFYAEIKRLLRREGAVVA 274
                 566788999999999998556999**************9999977755345799*************************9977777653......23556889999999999999875 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0049       4     108 ..     162     273 ..     159     277 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
   PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarena.....ksldleeriellqgda..keelsllerfDavllkgl.....tldallaldeprrvlealpkllkpggrlv 108
                  il +G G G ++ e+++ ++  +++ v++++  ++ +++ +     +s ++++r++l   da  ++ +++ + +D+++++         + +++      + +++++ll+ +g +v
  MMETSP0890-20130614|6267_1 162 DILIIGGGDGGIAREILKYKYFERLDMVEIDQVVVDTCQKFLprvfpASIAQDDRFHLFYEDAatFVTSAESQSYDLIIIDASdpigpGASLYTPT-----FYAEIKRLLRREGAVV 273
                 5888**************889999***************88888887677899999955555558888888888******8833555522223333.....4777778888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.83
# Mc/sec: 1151.98
//
Query:       MMETSP0890-20130614|6272_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   18.5   0.0     0.0017   18.0   0.0    1.3  1  PF12695.2 Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-07    0.0017       3     113 ..      41     171 ..      39     186 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.3e-07
   PF12695.2   3 vlvhGaggdssay................eplaealakrgfavvav.....dlpghgasegaaaakrvlaadll....dleriilvGhSlGGgvalelagrddrvkglvllapfpdgedlakltlpvllihGtrDg 113
                 +l+hG   +++++                ++++++  +rg++vv+v     d+    a  ++++ + v+ +  +     ++ri+ +G S GG +a+ l +    ++g+v + ++  + +++ ++lp+ ++h  rD+
  MMETSP0890-20130614|6272_1  41 LLLHGCHHSATDMwprsescprciglpieSKIVKESLSRGWVVVSVssvnrDHKCWHAERDEPRIAIVI-DTIQsktgAPRRIAAIGASSGGIMATSLYK----IDGIVGVVSQVMSTRVRPDHLPTRFVHMRRDE 171
                 666777666665546666666666666655777788899*******66655555544456666666666.44444456999****************887....7899988888778889999********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.74
# Mc/sec: 974.73
//
Query:       MMETSP0890-20130614|6275_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-10   37.8   0.1      5e-09   35.1   0.0    2.2  1  PF06990.6  Galactose-3-O-sulfotransferase
     0.0097   15.4   0.0      0.011   15.2   0.0    1.4  1  PF03567.9  Sulfotransferase family
  ------ inclusion threshold ------
      0.035   13.3   0.0       0.71    9.1   0.0    2.4  2  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF06990.6  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.1e-12     5e-09      69     316 ..      10     268 ..       2     278 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.1e-12
   PF06990.6  69 ivflkthktasstvlnilfrfaekhnlkvalPagsrndldyPrlfaarlveavgatrrfnilcnhlrfdldevrklvPtdtvyvtilrePaallessfsyykqyvPafrkvpaadleaflraPeayy.dasehravyaknllffdlGydnerdprseeayvrerileverrfrlvliaeyldeslvllrrllaWelddvlyfkl.naraassva..rlsaelae..............rar.aWnaldarlyehfnatlWrkvaelG 316
                 +vf+kt+kt s+ v + l   a    l+   P++  n  +    + a+  e +     +       r+d d +++l+P+ + +vti+reP+a + s++ + k++  + ++     + + +r+ +    da+ +   +a+  l    G      + s+e   +++il++e+r  lvl+++ l  sl +l   + W  d +  + + nar++  v+  r  ++ +               ra    na+d++ly h+   + r++a++ 
  MMETSP0890-20130614|6275_1  10 LVFVKTYKTGSTSVAEFLSAIAYVKGLHCLHPSSGGNYREGELKMRAKRGE-I---YDMSFRHPTPRLDEDALENLIPN-AKWVTIIREPIARFVSTMFFVKKI-GMRYGFDPIRIAEAIRNKQIPPdDANAFCENFAH-VLSGRRGTTALAYSDSPEIIAHDLILRLEKRNYLVLVQDDLLSSLAILALEMNWTPDVIQGIGIsNARKSL-VSggRRGPKRQTtnnqvscqsgsscaRAVlQCNAIDQHLYLHYKEVFARRLAAFP 268
                 89**************************99998755444444444444444.2...23333344579**********96.679************998766665.5566666667777777776655056667778877.57778898888888899989999*******************************98777666653666543.322244443333344556666666444432579******************9885 PP

>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-06     0.011       7      96 ..       6     102 ..       3     257 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.5e-06
   PF03567.9   7 pddkivfcrvpKvasttfkrvlvrlig.kkctcnrrsin.......etwlfsrrstgwscglfadltelssteipkrld.kyfkfifvRdPfeRllSay 96 
                 ++  +vf    K++st++ ++l      k + c ++s+         ++ ++r ++++    + ++ +l+++   ++l  +   ++++R+P++R++S  
  MMETSP0890-20130614|6275_1   6 KNCGLVFVKTYKTGSTSVAEFLSAIAYvKGLHCLHPSSGgnyregeLKMRAKRGEIYDMSFRHPTP-RLDEDAL-ENLIpNAKWVTIIREPIARFVSTM 102
                 56689999999******9999988766634444444444112222255555556666444444444.3333333.333335999*************63 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00016      0.71     101     129 ..      82     129 ..      10     152 .. 0.69
   2 ?   -2.1   0.0      0.39   1.8e+03     146     179 ..     227     260 ..     218     263 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00016
                 HTT-EEEEEE--HHHHHHHHHHHHHHCT...................C CS
  PF00685.22 101 dknlKiiylvRnpkdvavSryhfsrslk...................l 129
                  +n+K ++++R p +++vS + f ++++                   +
  MMETSP0890-20130614|6275_1  82 IPNAKWVTIIREPIARFVSTMFFVKKIGmrygfdpiriaeairnkqiP 129
                 589********************9998877666666666555554432 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.39
                 .HHHCCH-HHHHHHHHHHTCCCCCEEEEEHHHHH CS
  PF00685.22 146 egrvvcgsyfdhveewlklrkkgnvlflrYEdlk 179
                 +++v c s ++ ++ +l++   ++ l+l+Y +++
  MMETSP0890-20130614|6275_1 227 NNQVSCQSGSSCARAVLQCNAIDQHLYLHYKEVF 260
                 4788888999999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.85
# Mc/sec: 826.04
//
Query:       MMETSP0890-20130614|6274_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-15   55.3   0.0    7.6e-15   54.8   0.0    1.2  1  PF01866.12 Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> PF01866.12  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   5.6e-19   7.6e-15      36     295 ..      43     319 ..       9     326 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 5.6e-19
  PF01866.12  36 iddeeakalgadllvHyGHsclsp.......vkkeipvlyvfvei.....kidveelleklkenlkk.k..krialvttvqfvhaleevkeiLee.kgieveigkpdsrplspgqvlGctfsalkeedeadavlyvGdgrfhll.gvalatkkpvlaydPyksleveeveedaekilrrRyaaiekakdakkfgiivgtkggqgr.lklaerlekllkekgke.aylillseispdkLanld.vDafVqvaCPRlsidd.geaF.kkplLtPyEleialgkr 295
                 +d   a++++a+++v +G + +++       +  + +v++++        +++  + ++k+ + + k +  +++++++  ++ + +++ ++iL++  +++ +i   +++   + q+ G   + ++++  ++ vl++G+    ++ ++  a ++ v+ +dP  + +   ++++ ++ l+rR  + e a+ ak++g++v+  g+  + +++a+   +++++++ + ay+++l+  ++ kLa ++ ++afV+++     +   +++F  kp++t +El++al+ +
  MMETSP0890-20130614|6274_1  43 VDAIGAAHVDAEVIVYFGGEGVKSlpqdpnlT--RPRVVHIPNWFdqgneHVSEITKAQKCADFVLKtDdfSDVVVLYAPRWESVAKKCTDILQAsDKFNQVIIGTNEEKEESFQICGLWIKGNEKTFRVQGVLFLGSSHMAAEiSLRCAANTAVVLVDPE-TCQL--IQNSPSRRLARRHHRLELASTAKRWGVVVADVGRLDKlTQVADACCDWIERNEQRcAYVLALGVPTSTKLAHFNeLEAFVLIGADTTFLESlSSEFsAKPIITAAELRVALRMD 319
                 67778899999999999999888888888643..4777777754411111333333344455544443469************************534444444445555999*********99888779********999886256666***********.5554..599*****************************997662589999*****997665379999************88********8876655424556269***********9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 1257.38
//
Query:       MMETSP0890-20130614|6276_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-34  116.8   0.0    8.7e-34  116.2   0.0    1.3  1  PF02222.17 ATP-grasp domain
    4.5e-06   26.4   0.1    8.9e-06   25.4   0.0    1.5  1  PF13535.1  ATP-grasp domain
     0.0008   18.6   0.2     0.0028   16.8   0.1    1.8  1  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain


Domain annotation for each model (and alignments):
>> PF02222.17  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.9e-37   8.7e-34      25     171 ..     124     269 ..     107     270 .. 0.90

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.9e-37
                 ------EEEEES----------------------------EEEEEE----SEEEEE---B-----B----EEEEE..E----EEEEEEEEE....--HHHHHHHHHHHHHTT-----EEEEEE-----..EEEEEEESS------GGG-- CS
  PF02222.17  25 eelglpvvvKarrlgydGkGqsvvkseeeleqalealkeeklivEefvpfekElsvlvvRsveGevafypvvetv..qkdgilrlsvapaevsekqqkkaeeiakkiveeLggvGvlavElFvledge.ellvnElapRpHnsGhytlda 171
                 +++g+pvv K rr+g+dG+G++v++s+++l++++     +++++E+ v   kE+sv+++R  +  ++++p+ e v  ++ ++  + vapae++   ++k  +i+ k+v+eL+++G+l vElFv++++e ++lvnE+apR HnsGh t++a
  MMETSP0890-20130614|6276_1 124 SAMGFPVVQKLRRGGFDGRGVQVLHSKDDLQKCFP----GECLLENKVAILKEVSVVIARRDHHDIKAFPPCEAVfdERANVALYMVAPAELEPLVAEKCLTITTKLVQELDYIGLLCVELFVVDNEEkSVLVNEIAPRCHNSGHHTIEA 269
                 578***************************99875....66*******************99999********984457799******************************************655548******************97 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     2e-09   8.9e-06       3     179 ..      98     259 ..      96     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2e-09
   PF13535.1   3 rdKllmrellaeaglpvprfalvdseedleaaaeeigfpvvlKPadg.agslgvrrvddaaeleaalealaaeveldegeflvEeyie.Gdeysvdglvl.dgelvflgisryletsppdfsdgaelgsvspseeple..ealrelaerllkalglkngvfHlEfkltpd.Gr.lvliEinaRp 179
                  dK l+++++ae g+p+++f+l ++ +         gfpvv K ++g +  +gv++++++++l+++           +ge l+E+ +    e+sv  +   ++ + ++  ++ ++++  +++    l  v+p e ++   e+    + +l+++l++  g+  +E+++ ++  + + + Ei++R 
  MMETSP0890-20130614|6276_1  98 QDKGLQKQFFAERGIPTAPFVLSSDPS-------AMGFPVVQKLRRGgFDGRGVQVLHSKDDLQKC--------F--PGECLLENKVAiLKEVSVVIARRdHHDIKAFPPCEAVFDERANVA----LYMVAPAELEPLvaEKCLTITTKLVQELDY-IGLLCVELFVVDNeEKsVLVNEIAPRC 259
                 79**************98888888777.......357**********5558***************........5..899********6599999888887999999999999999777754....33333333333245****************.********99877544377779**996 PP

>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   6.1e-07    0.0028      37     205 ..     126     284 ..     121     290 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.1e-07
                 ----EEEEETT.-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEE.CCEETTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEE.EEE-TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH-- CS
  PF02786.12  37 igyPviikaaf.glGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvceren.slqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtve.flldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialg 205
                 +g+Pv+ k    g  G+G +v +++++l++ +              ++l+e  ++  ke+ v + r  + ++      e  ++++ +  +  vAP++ L++   ++  + + k+v+e++++g   ve f++d+++k+  v E+ +R   +   + +a       + +++al 
  MMETSP0890-20130614|6276_1 126 MGFPVVQKLRRgGFDGRGVQVLHSKDDLQKCFP------------GECLLENKVAILKEVSVVIARRDHHDIKAFPPCEAvFDERANVALYMVAPAE-LEPLVAEKCLTITTKLVQELDYIGLLCVElFVVDNEEKSVLVNEIAPRCHNSGHHTIEANATSQFSQLLRVALD 284
                 688888876541457888888888888887763............68***************999877777777766776156667888899***97.7888999999999***********98888689999*************98875555555555555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.87
# Mc/sec: 1043.93
//
Query:       MMETSP0890-20130614|6283_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.7   0.0       0.14   11.4   0.0    1.1  1  PF11130.3 F pilus assembly Type-IV secretion system for plasmid transfer


Domain annotation for each model (and alignments):
>> PF11130.3  F pilus assembly Type-IV secretion system for plasmid transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     1e-05      0.14     114     182 ..      25      98 ..       8     125 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1e-05
   PF11130.3 114 navtqlRrfrlvisvkvp.....kakeseeekeelnelrerleasLasaglaarrldpedllawlrellnpdpd 182
                 ++ ++ Rr+rl + v+++     + +++   +++    ++rl+++L +++l  ++l ++dl + +++l n+ ++
  MMETSP0890-20130614|6283_1  25 ESLIPMRRIRLTVAVSCTlskaaRVLATLLIDDDCTPGVQRLVKQLHGLNLGKQTLAADDLRKTIHQLANHPNS 98 
                 344489************9766555667777777777889*****************************76433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 511.95
//
Query:       MMETSP0890-20130614|6281_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-58  197.7   0.0    1.8e-58  197.4   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   1.3e-62   1.8e-58      33     282 ..      20     274 ..      15     275 .. 0.98

  Alignments for each domain:
  == domain 1    score: 197.4 bits;  conditional E-value: 1.3e-62
  PF00248.16  33 lfDtAeyYgkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveileka...kkkkkvkivvvqveynll.neleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd..........aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeidell 282
                 ++DtAe+Yg g+se+l+ge+ k+   ++ +  iatK+   ++ +++ s++++ +++e+sLkrl++ ++ l+++h p+ +    e+ ++ l++++++G+++++GvSn++ e ++++   + +++++++++q++y+ll +  ee+gll++c++++v++ aysplg Gl t+ y++e++k +k+pr++             + + l+ +a+ h+  +a++al+++    ++ ++i ga++++q+++nl++l++++s++e+ae+d ++
  MMETSP0890-20130614|6281_1  20 FIDTAEVYGFGRSENLIGEFAKG--IPNFKTPIATKF---AALPWRTSANDVVKACEASLKRLDRPCIELYQIHFPNGWAN--EQYWDGLADCVDKGLVKAVGVSNYGSEAIKACqasLARRGIPLTSNQIQYSLLyRYPEENGLLQTCKNLNVDVLAYSPLGLGLCTNTYTRENQKLPKGPREQltktyladdrFVALQNSLDMIARRHNAVPAAVALNWVR--AKGAIPIAGARNLKQVKQNLASLDWDFSTDELAELDTIA 274
                 8**********************..************...*****************************************..***************************************************************************************************************99999999*********************..9***********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1089.25
//
Query:       MMETSP0890-20130614|6280_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.93
# Mc/sec: 1069.34
//
Query:       MMETSP0890-20130614|6284_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-05   22.4   1.8      0.023   14.2   0.1    2.8  3  PF13414.1  TPR repeat
    0.00069   18.9   0.1       0.01   15.2   0.0    2.3  2  PF00515.23 Tetratricopeptide repeat
     0.0023   17.6   2.2     0.0046   16.6   0.0    2.5  3  PF07719.12 Tetratricopeptide repeat
     0.0059   16.8   0.8       0.18   12.2   0.0    2.6  2  PF13174.1  Tetratricopeptide repeat
     0.0062   17.0   8.2     0.0091   16.5   2.0    2.5  2  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.4   2.4      0.025   15.0   0.2    2.2  2  PF13428.1  Tetratricopeptide repeat
        0.1   11.8   0.6       0.12   11.6   0.4    1.1  1  PF12729.2  Four helix bundle sensory module for signal transduction


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.011        21      39      51 ..       7      19 ..       2      40 .. 0.65
   2 !   14.2   0.1   1.2e-05     0.023      21      69 .]      26      80 ..      24      80 .. 0.76
   3 !   14.0   0.1   1.4e-05     0.027      10      52 ..      56      98 ..      50     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.011
   PF13414.1 39 lyynlAlaylklg 51
                + +nlA+++lk+ 
  MMETSP0890-20130614|6284_1  7 IRLNLAQCLLKQA 19
                679*******986 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.2e-05
   PF13414.1 21 eAieayekAleldpnnae.......lyynlAlaylklgkdyeeAledyekAleldP 69
                eA ++++  le  +++         ++y +A+a l  g  y++A  d+ kA+  dP
  MMETSP0890-20130614|6284_1 26 EAARQLDLVLEAVEKYQLdgkwqtkALYWRAKARLAAG-VYDQAESDLVKAVTHDP 80
                5666666666655554444445556*************.9***********99887 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.4e-05
   PF13414.1 10 GnalfkegdydeAieayekAleldpnnaelyynlAlaylklgk 52
                + a + +g yd+A+  + kA+  dpn+  + ++lA +  ++ +
  MMETSP0890-20130614|6284_1 56 AKARLAAGVYDQAESDLVKAVTHDPNDKLIRSALADVRHQRRQ 98
                4555667778999999999999999999999999988887764 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.14   2.7e+02       5      14 ..       9      18 ..       6      18 .. 0.88
   2 !   15.2   0.0   5.3e-06      0.01       2      34 .]      50      82 ..      49      82 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.14
                HHHHHHHHHT CS
  PF00515.23  5 ynlGnaylkl 14
                 nl++++lk+
  MMETSP0890-20130614|6284_1  9 LNLAQCLLKQ 18
                69*****997 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 5.3e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnPnn 34
                kaly ++ a l  g yd+A+ +  kA++++Pn+
  MMETSP0890-20130614|6284_1 50 KALYWRAKARLAAGVYDQAESDLVKAVTHDPND 82
                79*****************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   2.5e+03       6      14 ..      10      18 ..       8      18 .. 0.85
   2 ?   -1.6   0.0       1.6   3.1e+03      14      24 ..      31      41 ..      25      42 .. 0.52
   3 !   16.6   0.0   2.3e-06    0.0046       2      34 .]      50      82 ..      49      82 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.3
                HHHHHHHHT CS
  PF07719.12  6 nlGlayykl 14
                nl+++++k+
  MMETSP0890-20130614|6284_1 10 NLAQCLLKQ 18
                899999986 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.6
                TT-HHHHHHHH CS
  PF07719.12 14 lgdyeeAleaf 24
                l+   eA+e +
  MMETSP0890-20130614|6284_1 31 LDLVLEAVEKY 41
                44444666666 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 2.3e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                +aly++++a +++g y++A+ ++ kA+ +dPn+
  MMETSP0890-20130614|6284_1 50 KALYWRAKARLAAGVYDQAESDLVKAVTHDPND 82
                69*****************************97 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.089   1.7e+02       4      14 ..       9      23 ..       7      42 .. 0.66
   2 !   12.2   0.0   9.2e-05      0.18       2      32 ..      51      81 ..      50      82 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.089
                HHHHHHHHHH....H CS
   PF13174.1  4 yklalsyykl....g 14
                ++la++++k+     
  MMETSP0890-20130614|6284_1  9 LNLAQCLLKQagsvP 23
                899****99644442 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 9.2e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1  2 AlyklalsyyklgdtdeAlealerlikeyPd 32
                Aly++a++++++g +d+A   l + ++  P+
  MMETSP0890-20130614|6284_1 51 ALYWRAKARLAAGVYDQAESDLVKAVTHDPN 81
                9**********99*****9988888877776 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.074   1.4e+02      33      48 ..       7      23 ..       5      44 .. 0.68
   2 !   16.5   2.0   4.6e-06    0.0091       3      50 ..      55     102 ..      50     109 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.074
   PF13432.1 33 allllaeallrl.grld 48
                ++l+la++ll++ g ++
  MMETSP0890-20130614|6284_1  7 IRLNLAQCLLKQaGSVP 23
                58999999996655444 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 4.6e-06
   PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeA 50 
                 +A+a+l+aG yd+A+  l +a+  +P +  ++ +la++ +++ +l + 
  MMETSP0890-20130614|6284_1  55 RAKARLAAGVYDQAESDLVKAVTHDPNDKLIRSALADVRHQRRQLRQD 102
                 699*************************************99998765 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.1   2.2e+03      18      25 ..      25      32 ..       5      43 .. 0.51
   2 ?   15.0   0.2   1.3e-05     0.025       2      43 ..      50      91 ..      49      92 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.1
   PF13428.1 18 deAiallr 25
                 eA+++l+
  MMETSP0890-20130614|6284_1 25 SEAARQLD 32
                44444444 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.3e-05
   PF13428.1  2 eallalarallalGdpdeAiallrralalaPddaealllLar 43
                +al+ +a a la+G +d+A+  l +a+ ++P+d  ++ +La+
  MMETSP0890-20130614|6284_1 50 KALYWRAKARLAAGVYDQAESDLVKAVTHDPNDKLIRSALAD 91
                58999***********************************97 PP

>> PF12729.2  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4     6e-05      0.12     120     177 ..      64     121 ..      25     122 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6e-05
   PF12729.2 120 aYrevrkkvlelakegkkdeAyelyetelkparekviealdelvdlnlkvAeeayeen 177
                  Y+++++++++ ++   +d+ ++   ++++++r++++++ + l + +l ++ +++++n
  MMETSP0890-20130614|6284_1  64 VYDQAESDLVKAVTHDPNDKLIRSALADVRHQRRQLRQDQRSLYQGKLVQSSNENDDN 121
                 6*******************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 460.55
//
Query:       MMETSP0890-20130614|6288_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   21.7   0.1    0.00043   20.6   0.0    1.6  1  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.2e-08   0.00043       2      84 ..     153     224 ..     152     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.2e-08
   PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsd.r.segvakevedeevvpkpgrlvlFksdrslHrvt 84 
                 ++++y++g +l  H D+   ++++++ ++++ + +      +l  +p +   + g+ +e+      +kpg+++l++s+++lH+ t
  MMETSP0890-20130614|6288_1 153 GIRVYERGSYLHLHDDT--AGTHVVSGIINIDQTD------CLTDWPVHiFdHQGKLHELP-----MKPGDMLLYESAKLLHGRT 224
                 6899*************..5********8888666......78888766212445555555.....****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:01.18
# Mc/sec: 503.64
//
Query:       MMETSP0890-20130614|6286_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-10   38.9   7.7    3.2e-06   26.5   2.4    3.5  2  PF13414.1  TPR repeat
    1.5e-09   36.8   2.8      0.015   15.0   0.0    4.2  4  PF07719.12 Tetratricopeptide repeat
      5e-09   35.2   2.5      0.042   13.3   0.0    3.5  3  PF00515.23 Tetratricopeptide repeat
    3.7e-05   23.4   0.2     0.0018   18.0   0.0    2.6  2  PF13424.1  Tetratricopeptide repeat
    0.00082   19.8   0.6       0.67   10.5   0.0    3.4  3  PF13432.1  Tetratricopeptide repeat
     0.0055   17.1   0.0        0.3   11.7   0.0    3.1  3  PF13428.1  Tetratricopeptide repeat
      0.006   16.1   8.3       0.22   11.2   0.1    3.9  4  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.055   13.1   0.5          2    8.2   0.0    3.3  4  PF13176.1  Tetratricopeptide repeat
      0.086   13.2   7.9        3.5    8.1   0.1    3.9  5  PF13174.1  Tetratricopeptide repeat
       0.25   11.4   4.1        6.2    6.9   0.3    3.1  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   2.4   2.3e-09   3.2e-06       2      65 ..      17     108 ..      16     112 .. 0.83
   2 !    9.6   0.1   0.00046      0.63      38      69 .]     118     154 ..     110     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.3e-09
   PF13414.1   2 nAealkelGnalfkegdydeAieayekAleld......pnnae..........................lyynlAlaylklgkdyeeAledyekAl 65 
                 +Ae++k +Gn lf++++y++Ai  +++  ++           e                          +  n+A++yl+lg d ++ ++++e+++
  MMETSP0890-20130614|6286_1  17 KAEEYKLAGNDLFQKKEYKKAIIRFSRVRAYTwqpsgeA---EqyagnrseaakftpeerskllrldqiACGNIAQSYLNLG-DSRQCIHYCELVI 108
                 79****************************954443330...345555666677888899999999999999**********.68********876 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00046
   PF13414.1  38 e......lyynlAlaylklgkdyeeAledyekAleldP 69 
                 +      ++++ A+a l+   d ++A  ++++Al +dP
  MMETSP0890-20130614|6286_1 118 NpdllvkALSRSAQASLNSL-DLDKAKSYINRALTIDP 154
                 444555699999******99.689************99 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2   0.00058      0.79       1      26 [.      18      43 ..      18      48 .. 0.87
   2 ?    0.3   0.1      0.54   7.4e+02       8      22 ..      53      67 ..      52      69 .. 0.85
   3 !    8.9   0.0   0.00098       1.3       3      26 ..      83     106 ..      81     113 .. 0.89
   4 !   15.0   0.0   1.1e-05     0.015       2      33 ..     124     155 ..     123     156 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00058
                HHHHHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafek 26
                ae + + G+ ++++++y++A+  f +
  MMETSP0890-20130614|6286_1 18 AEEYKLAGNDLFQKKEYKKAIIRFSR 43
                6889999*************987766 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.54
                HHHHHHTT-HHHHHH CS
  PF07719.12  8 GlayyklgdyeeAle 22
                G+a  ++g+  eA++
  MMETSP0890-20130614|6286_1 53 GEAEQYAGNRSEAAK 67
                6788899******98 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00098
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafek 26 
                 a+ n++++y++lgd  ++++++e 
  MMETSP0890-20130614|6286_1  83 ACGNIAQSYLNLGDSRQCIHYCEL 106
                 7889****************9985 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +al + ++a +++ d+++A+ + ++Al +dP+
  MMETSP0890-20130614|6286_1 124 KALSRSAQASLNSLDLDKAKSYINRALTIDPK 155
                 689999*************************7 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.3    0.0031       4.2       1      21 [.      18      38 ..      18      39 .. 0.89
   2 !   13.3   0.0   3.1e-05     0.042       3      26 ..      83     106 ..      82     109 .. 0.91
   3 !   13.2   0.0   3.4e-05     0.047       2      33 ..     124     155 ..     123     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0031
                HHHHHHHHHHHHHTT-HHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAl 21
                a+ ++  Gn ++++++y++A+
  MMETSP0890-20130614|6286_1 18 AEEYKLAGNDLFQKKEYKKAI 38
                5678888*************8 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyyek 26 
                 a+ n+++ yl+lg+  +++ y+e 
  MMETSP0890-20130614|6286_1  83 ACGNIAQSYLNLGDSRQCIHYCEL 106
                 789*******************96 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                 kal + ++a l+  ++d+A  y ++AL+++P+
  MMETSP0890-20130614|6286_1 124 KALSRSAQASLNSLDLDKAKSYINRALTIDPK 155
                 677777888888889****************7 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.08   1.1e+02      11      39 ..      24      53 ..      16      67 .. 0.78
   2 !   18.0   0.0   1.3e-06    0.0018       9      77 ..      85     154 ..      79     155 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.08
   PF13424.1 11 lalvlrrlgdydeAlelyekalel.lrelg 39
                 ++ l+++++y++A+  + ++ +  ++  g
  MMETSP0890-20130614|6286_1 24 AGNDLFQKKEYKKAIIRFSRVRAYtWQPSG 53
                568888999999999999888877665555 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.3e-06
   PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrel.gddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  n+a++++ lgd  +++ ++e ++  +    ++++  +++al   a++ l   d+d+A+ y ++Al+i++
  MMETSP0890-20130614|6286_1  85 GNIAQSYLNLGDSRQCIHYCELVIGKFDDDkHPNPDLLVKALSRSAQASLNSLDLDKAKSYINRALTIDP 154
                 59************************6666367888899****************************986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.066        91       3      28 ..      24      51 ..      22      67 .. 0.80
   2 !   10.5   0.0   0.00049      0.67       4      64 ..      88     156 ..      86     157 .. 0.91
   3 !    8.5   0.2    0.0022         3       4      50 ..     130     176 ..     127     188 .] 0.73

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.066
   PF13432.1  3 lArallraGdydeAlaaleaalala..P 28
                 +++l++ ++y++A+  +++++a+   P
  MMETSP0890-20130614|6286_1 24 AGNDLFQKKEYKKAIIRFSRVRAYTwqP 51
                5899999999999999999999987774 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00049
   PF13432.1   4 ArallraGdydeAlaaleaalala.......Pe.aaeallllaeallrlgrldeAaallraalalaPdd 64 
                 A+++l++Gd ++++++ e ++ ++       P+  + al + a+a l   +ld+A  ++++al ++P++
  MMETSP0890-20130614|6286_1  88 AQSYLNLGDSRQCIHYCELVIGKFdddkhpnPDlLVKALSRSAQASLNSLDLDKAKSYINRALTIDPKS 156
                 899*********************9999977447*************999*************999986 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0022
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeA 50 
                 A+a l++ d+d+A  ++++al  +P+   a+  +  + ++ +++  +
  MMETSP0890-20130614|6286_1 130 AQASLNSLDLDKAKSYINRALTIDPKSTAARSVYRSLQAAFKQYNSE 176
                 89999999*****************9666666555555555555544 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.9   2.7e+03       4      27 ..      21      44 ..      18      60 .. 0.73
   2 ?    1.8   0.0      0.34   4.6e+02       7      30 ..      87     110 ..      83     129 .. 0.70
   3 !   11.7   0.0   0.00022       0.3       3      39 ..     125     161 ..     122     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.9
   PF13428.1  4 llalarallalGdpdeAiallrra 27
                + + ++ l++  ++++Ai  + r+
  MMETSP0890-20130614|6286_1 21 YKLAGNDLFQKKEYKKAIIRFSRV 44
                555666788888899998777766 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.34
   PF13428.1   7 larallalGdpdeAiallrralal 30 
                  a+ +l+lGd  + i +++ ++ +
  MMETSP0890-20130614|6286_1  87 IAQSYLNLGDSRQCIHYCELVIGK 110
                 689999999999998888877653 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00022
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaeall 39 
                 al + a+a l++ d+d+A  + +ral  +P++ +a+ 
  MMETSP0890-20130614|6286_1 125 ALSRSAQASLNSLDLDKAKSYINRALTIDPKSTAARS 161
                 67777888889999******************99985 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.34   4.6e+02      11      21 ..      28      38 ..      15      39 .. 0.81
   2 ?   -2.8   0.1       4.8   6.6e+03       9      22 ..      54      67 ..      53      68 .. 0.65
   3 !    6.7   0.0    0.0044       6.1       3      27 ..      83     107 ..      81     109 .. 0.86
   4 !   11.2   0.1   0.00016      0.22      16      32 ..     138     154 ..     129     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.34
                HHHTT-HHHHH CS
   PF13181.1 11 YrqlGdydkAk 21
                ++q+++y+kA+
  MMETSP0890-20130614|6286_1 28 LFQKKEYKKAI 38
                57899999986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.8
                -HHHHTT-HHHHHH CS
   PF13181.1  9 diYrqlGdydkAke 22
                +++   G+ ++A +
  MMETSP0890-20130614|6286_1 54 EAEQYAGNRSEAAK 67
                56666788888765 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0044
                 -TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeyleka 27 
                 a+ n+++ Y++lGd  + + y e +
  MMETSP0890-20130614|6286_1  83 ACGNIAQSYLNLGDSRQCIHYCELV 107
                 5779**********99999998876 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00016
                 -HHHHHHHHH---HHHH CS
   PF13181.1  16 dydkAkeylekalelkp 32 
                 d dkAk+y ++al ++p
  MMETSP0890-20130614|6286_1 138 DLDKAKSYINRALTIDP 154
                 679*************9 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.1   4.2e+03      12      19 ..      31      38 ..      25      41 .. 0.77
   2 ?   -1.2   0.1       1.5   2.1e+03       8      20 ..      55      67 ..      53      68 .. 0.76
   3 ?    8.2   0.0    0.0015         2       1      30 [.      83     113 ..      83     118 .. 0.82
   4 ?    0.6   0.0      0.42   5.7e+02      14      32 ..     138     154 ..     125     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3.1
   PF13176.1 12 lgdyekAi 19
                  +y+kAi
  MMETSP0890-20130614|6286_1 31 KKEYKKAI 38
                56899998 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.5
   PF13176.1  8 lysrlgdyekAie 20
                + +  g++++A++
  MMETSP0890-20130614|6286_1 55 AEQYAGNRSEAAK 67
                566789****997 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0015
   PF13176.1   1 allnLarlysrlgdyekAielyeraL.altk 30 
                 a+ n+a+ y +lgd ++ i ++e  + ++++
  MMETSP0890-20130614|6286_1  83 ACGNIAQSYLNLGDSRQCIHYCELVIgKFDD 113
                 799******************9995544444 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.42
   PF13176.1  14 dyekAielyeraLaltkdp 32 
                 d +kA ++  r  alt dp
  MMETSP0890-20130614|6286_1 138 DLDKAKSYINR--ALTIDP 154
                 67999999999..888777 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.85   1.2e+03      10      27 ..      28      45 ..      20      47 .. 0.72
   2 ?   -2.7   0.1       7.5     1e+04      11      20 ..      58      66 ..      53      67 .. 0.49
   3 ?    7.2   0.0    0.0052       7.2       5      31 ..      86     112 ..      86     114 .. 0.87
   4 ?    8.1   0.1    0.0026       3.5       2      33 .]     125     156 ..     124     156 .. 0.93
   5 ?   -2.4   0.1       5.7   7.8e+03      19      29 ..     159     169 ..     157     173 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.85
                HHHHHHHHHHHHHHHHHH CS
   PF13174.1 10 yyklgdtdeAlealerli 27
                +++ +++ +A+  + r++
  MMETSP0890-20130614|6286_1 28 LFQKKEYKKAIIRFSRVR 45
                455569999999888876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 7.5
                HHHHHHHHHH CS
   PF13174.1 11 yklgdtdeAl 20
                y +g+ +eA 
  MMETSP0890-20130614|6286_1 58 Y-AGNRSEAA 66
                3.44555554 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
   PF13174.1   5 klalsyyklgdtdeAlealerlikeyP 31 
                 ++a+sy++lgd+++ + + e +i ++ 
  MMETSP0890-20130614|6286_1  86 NIAQSYLNLGDSRQCIHYCELVIGKFD 112
                 69******99*****999999987775 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1   2 Alyklalsyyk.lgdtdeAlealerlikeyPdS 33 
                 Al + a++ ++ l d d+A+ + +r ++  P+S
  MMETSP0890-20130614|6286_1 125 ALSRSAQASLNsL-DLDKAKSYINRALTIDPKS 156
                 888999999999*.****************998 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 5.7
                 HHHHHHHHHHH CS
   PF13174.1  19 Alealerlike 29 
                 A+ +++ l + 
  MMETSP0890-20130614|6286_1 159 ARSVYRSLQAA 169
                 67777766554 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.098   1.3e+02      35      45 ..      28      38 ..       5      49 .. 0.70
   2 ?    6.9   0.3    0.0045       6.2      27      48 ..      83     104 ..      30     124 .. 0.68
   3 ?    1.9   0.1      0.16   2.2e+02       4      38 ..     138     172 ..     135     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.098
                HHH---HHHHH CS
   PF12895.2 35 lylngeykrAy 45
                l++ +eyk+A+
  MMETSP0890-20130614|6286_1 28 LFQKKEYKKAI 38
                67777777774 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0045
                 CHHHHHHHHHH---HHHHHHHH CS
   PF12895.2  27 ylyalAlclylngeykrAyell 48 
                 +  ++A++++++g+ +++++++
  MMETSP0890-20130614|6286_1  83 ACGNIAQSYLNLGDSRQCIHYC 104
                 44457***************98 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.16
                 -HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH- CS
   PF12895.2   4 nyknAlflaekllaespkdpedaylyalAlclyln 38 
                 + ++A  +++++l+ +pk++ + + y+  ++ +++
  MMETSP0890-20130614|6286_1 138 DLDKAKSYINRALTIDPKSTAARSVYRSLQAAFKQ 172
                 6788889999*****99876777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:01.64
# Mc/sec: 274.70
//
Query:       MMETSP0890-20130614|6285_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-24   86.8   0.0    1.7e-24   86.1   0.0    1.3  1  PF05903.9 PPPDE putative peptidase domain
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.023   14.5   0.0    1.4  1  PF04970.8 Lecithin retinol acyltransferase
       0.11   11.7   0.0       0.17   11.0   0.0    1.2  1  PF04301.8 Protein of unknown function (DUF452)


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   3.8e-28   1.7e-24       3     134 ..      33     168 ..      32     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 3.8e-28
   PF05903.9   3 vklivydlsliktglarrvsllllGkk.....legiyhtgvevygkeyalggkekeesgitelkpkttsegakfresielgeTevteeevreileelsaeyhgdkYnLiskNCnhFtddlvdlLtg.kkiPkwinrla 134
                 v ++vydl  i   +  +  ll l ++       gi+h+g++++g+ey++g++e+  +g+++++pk+   ga fr+si++g+ +++   v+  l +++++++g++Y L++kNCnhF+++++  L   +++P win la
  MMETSP0890-20130614|6285_1  33 VVVNVYDLADIGVCMDLSSVLLSLNEQtmslwDMGIFHSGIVINGVEYSFGYCENG-TGVYCCEPKS-ACGAVFRRSIPMGNAKYPSRFVDIQLVRMAEKWQGSSYSLLTKNCNHFCEQVCLTLGVpEPFPAWINGLA 168
                 678888887444444433333333333445443589****************8888.**********.8899****************************************************763789*****986 PP

>> PF04970.8  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.1e-06     0.023      92     120 ..     124     150 ..     100     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.1e-06
                 HHHHHHHH---EESS---HHHHHHHHHHH CS
   PF04970.8  92 viqrAeellgqeveYsllsnNCEhFvtyc 120
                  +++Ae+  g   +Ysll++NC hF+ ++
  MMETSP0890-20130614|6285_1 124 LVRMAEKWQG--SSYSLLTKNCNHFCEQV 150
                 6777887766..89***********9875 PP

>> PF04301.8  Protein of unknown function (DUF452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.8e-05      0.17      41     106 ..      37     106 ..      24     119 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.8e-05
   PF04301.8  41 cydyrdlnldvdfsay....rhirlvawsmgvwvaervlqgirlksatavngtglpcddqygipeavfkg 106
                 +yd  d+ + +d+s+     +   +  w mg++ +  v++g++     + ngtg+ c +      avf+ 
  MMETSP0890-20130614|6285_1  37 VYDLADIGVCMDLSSVllslNEQTMSLWDMGIFHSGIVINGVEYSFGYCENGTGVYCCEPKSACGAVFRR 106
                 699999999999886422225678899******************************9988888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:01.78
# Mc/sec: 494.08
//
Query:       MMETSP0890-20130614|6289_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.066   13.1   0.4       0.14   12.1   0.3    1.5  1  PF05229.10 Spore Coat Protein U domain


Domain annotation for each model (and alignments):
>> PF05229.10  Spore Coat Protein U domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3     1e-05      0.14      50     114 ..       4      61 ..       2      83 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1e-05
  PF05229.10  50 gtsytvaldgGangsggtarrlknatgaaylpYqLYqdaarstvwgsgtgvslasttltgtsqtl 114
                 ++ ++v+l+ ++  +++t r+l n+++++     LY+d ++++ ++ +++ +  s + +++++t+
  MMETSP0890-20130614|6289_1   4 TVDASVKLGEDSEVKSST-RYLNNSEEKT-----LYKDFQHTQSLQKTNDDNHESIS-STANETV 61 
                 678899999999999999.*****76666.....***************99999876.4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       813  (0.0594646); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.45s 00:00:01.05 Elapsed: 00:00:00.61
# Mc/sec: 986.04
//
Query:       MMETSP0890-20130614|6282_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   24.6   0.0    2.8e-05   23.7   0.0    1.4  1  PF13489.1 Methyltransferase domain
    0.00072   19.8   0.0     0.0013   19.0   0.0    1.5  1  PF08242.7 Methyltransferase domain
     0.0012   18.3   0.0     0.0028   17.1   0.0    1.6  1  PF13847.1 Methyltransferase domain
     0.0014   19.0   0.0     0.0025   18.1   0.0    1.5  1  PF08241.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   8.2e-09   2.8e-05      25     130 ..     124     241 ..      86     264 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 8.2e-09
   PF13489.1  25 rvLDiGcGtGil......lell..aen.gfdvtgvDpspaaigk............akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakw 130
                 +vL iG+G+ +l         l  +++ +  +t +Dps++  +             a+q+         + +p + fd +   + l+hv d+e +l+ +  +++ +G++++ +   +  ++++ +++
  MMETSP0890-20130614|6282_1 124 QVLSIGSGDCRLelqitkI--LeiRTSiFLGFTCFDPSDEGYHGslknigsesrhrAIQSLA-------DCQPEANFDAVFIHHALHHVTDLEGTLDFVTGNMARDGVVVIADMVGRSGHRRWPEQL 241
                 8999999999985555332..22244424478899998876666666555555322222222.......333778**************************************87765555554443 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.9e-07    0.0013       2      98 ..     127     222 ..     126     223 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.9e-07
   PF08242.7   2 eiGcGtGsllrallekl.....pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  iG+G+ +l   + + l     + + +t+ D+s +   +  +k    e ++ +   l      d ++++ fD+v+++++lhh+ d++ +ld +   ++ +Gv
  MMETSP0890-20130614|6282_1 127 SIGSGDCRLELQITKILeirtsIFLGFTCFDPSDEGY-HGSLKNIGSESRHRAIQSL-----ADCQPEANFDAVFIHHALHHVTDLEGTLDFVTGNMARDGV 222
                 6788888887777777777788899999999999999.5555555555433333333.....34455579*********************99998888886 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.1e-07    0.0028      59     125 ..     175     245 ..     119     264 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.1e-07
   PF13847.1  59 iqgdieelekl.leesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps...llaelpeeleels 125
                 ++  i++l  +  e+ fD v+ + +l++++d++ +l  +  ++  +g++++++++   +++  pe+le  +
  MMETSP0890-20130614|6282_1 175 RHRAIQSLADCqPEANFDAVFIHHALHHVTDLEGTLDFVTGNMARDGVVVIADMVgrsGHRRWPEQLELAH 245
                 5566777444433489**************************************96664444445555444 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.2e-07    0.0025      22      94 ..     153     224 ..     126     225 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.2e-07
   PF08241.7  22 vtgvDlseemlatakerlkeeglelvvadaeel.pfe.dnsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                 +t++D+s e  + + +++  e    ++  +++l + + +++fD+v+++++l+h++d+e +l+ +   +  +G++v
  MMETSP0890-20130614|6282_1 153 FTCFDPSDEGYHGSLKNIGSE---SRHRAIQSLaDCQpEANFDAVFIHHALHHVTDLEGTLDFVTGNMARDGVVV 224
                 567777777555444444444...4555566665333389*****************999988877777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.62
# Mc/sec: 1685.18
//
Query:       MMETSP0890-20130614|6292_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   56.7   1.2    4.8e-15   55.5   0.1    1.9  2  PF04417.7 Protein of unknown function (DUF501)


Domain annotation for each model (and alignments):
>> PF04417.7  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   3.5e-19   4.8e-15       1     133 [.      24     159 ..      24     165 .. 0.88
   2 ?   -0.2   0.1     0.052   7.1e+02      56      84 ..     194     222 ..     192     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.5e-19
   PF04417.7   1 vaarcasgnPtVvktaplledgkpfptlfwLtcpelkkavsrlEaegvikeleekldedeelaeayeaaherylakReellseeerellerkg...avealkkvgvGGiadad..kvkCLHalvAhaLagegknpvGe 133
                 v  rca+g P+    ap  +++     l +L+cp l++ +++ E+ g++++ +++l+ed++ + ++++  +r++++R++l+ +++ +  ++k    a+e + + g++G++  +  ++kC Ha vA+ L +++k  +++
  MMETSP0890-20130614|6292_1  24 VGSRCAHGYPQAEILAP--RQRGISGHLVRLSCPLLCQFIDKWENDGAVRTESTRLSEDQNWKCDLDRINARHANTRKNLIDARRIAAARAKYgdhATETVMNSGIAGLSPHKhnDIKCIHAIVADELLADQKGLIAT 159
                 6789*******977889..77888889******************************************************77777766666689888999999999998877557***********99877776665 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.052
   PF04417.7  56 ldedeelaeayeaaherylakReellsee 84 
                 l++ ++l+++ ++  + y+++R+++   +
  MMETSP0890-20130614|6292_1 194 LKNKQRLRQRRDRRRALYAKNRRSIFDIK 222
                 67788888889999999999999887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 1033.98
//
Query:       MMETSP0890-20130614|6295_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    9.0   9.9       0.35   10.5   4.7    1.7  2  PF09745.4 Coiled-coil domain-containing protein 55 (DUF2040)


Domain annotation for each model (and alignments):
>> PF09745.4  Coiled-coil domain-containing protein 55 (DUF2040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.7   2.6e-05      0.35      94     126 ..       4      36 ..       2      38 .. 0.87
   2 ?   -0.5   0.0     0.064   8.8e+02      40      40 ..      55      55 ..      36      76 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.6e-05
   PF09745.4  94 AYkkkleerkkleeeekkreeleeeedktkkkd 126
                  Yk+  eer+++++ee+++e  ++ +d+ +++d
  MMETSP0890-20130614|6295_1   4 GYKAEIEERDRMNQEEEEEEDNKNDDDNANQGD 36 
                 6**************999999999888888776 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.064
   PF09745.4 40 e 40
                e
  MMETSP0890-20130614|6295_1 55 E 55
                1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1239  (0.0906232); expected 273.4 (0.02)
Passed bias filter:                      811  (0.0593183); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.46s 00:00:00.88 Elapsed: 00:00:01.02
# Mc/sec: 183.25
//
Query:       MMETSP0890-20130614|6296_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       175  (0.0127999); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 522.41
//
Query:       MMETSP0890-20130614|6302_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   14.3   0.1      0.029   13.6   0.0    1.3  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-06     0.029     138     194 ..       4      60 ..       1      81 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.1e-06
                 HHHHHHHH.HHHCCH-HHHHHHHHHHTCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT CS
  PF00685.22 138 eeffdlflegrvvcgsyfdhveewlklrkkgnvlflrYEdlkkdpakeikeiaeFlG 194
                 + f dlf +      + + ++ +w+  +    +l++rYEdl+  ++ +++++a Fl+
  MMETSP0890-20130614|6302_1   4 QRFADLFESLAFAEIKTWCQFNRWWLEARGVELLVIRYEDLIIHTRHTLRRVAWFLN 60 
                 567777777777777889999**********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.85
# Mc/sec: 851.41
//
Query:       MMETSP0890-20130614|6305_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                       72  (0.00526624); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:01.12
# Mc/sec: 1287.25
//
Query:       MMETSP0890-20130614|6303_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-16   58.4   0.7    7.2e-16   58.4   0.5    3.4  2  PF01145.20 SPFH domain / Band 7 family
     0.0012   18.2   4.6     0.0057   16.0   0.1    2.4  2  PF13421.1  SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.5   1.1e-19   7.2e-16       2     167 ..      39     287 ..      38     309 .. 0.79
   2 ?  -10.7  10.2         2   1.4e+04      86     175 ..     296     392 ..     281     431 .. 0.51

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 1.1e-19
  PF01145.20   2 tvepgevgvvvrfGkvkr......vlepGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..........sdakkliaavaqeeenlenllrrllesalrevl............sqmtldeilsnrselaaelkneln....................................................................eqlqkygievvdvritdvdpppevkqalakkqaaeaea 167
                 ++++g++++v+  G++ +      v++ G h   Pf ++ ++vs r +++d ++      t+D++ v++d  +++rv          + ++k++++v  +++ len+l+  l +++r ++            + +t+ e+++          ++                                                                      +++++ g+e++dv i++v++p+e+++++  k   + ++
  MMETSP0890-20130614|6303_1  39 IIPEGYYALVTTSGREIKhssgscVWPSGYHSAGPFTKVSHLVSKRAIVFDAPV--KGCKTADNVTVQIDTALVFRVmgdekygespELVRKFVYQV--TPAGLENQLKDSLAESIRVLArslkhtsvyacrTGRTAVEAVAA---------DDDEqgtaeakisdyqkrskdvvsplvsgeigsgdielvgevgevevkpldetdeadydgaevvkvlidqlnKEFKEQGVEIIDVLIQNVKLPEEIARQMSGKTLVRSKQ 287
                 89**********9999999***********************************..***************************76666667777777..9999****************988855555555544444444433.........22222233333335555566666677778888888888888887777777777777777777777777777799************************987766554444 PP

  == domain 2    score: -10.7 bits;  conditional E-value: 2
  PF01145.20  86 eenlenllrrllesalrevl...sqmtl..deilsnr.selaaelkneln...eqlqkygievvdvritdvdppp..evkqa.lakkqaaeaeaaeaeiara 175
                 ++  + +l++ +e++  e+    ++m++   ++++ + ++l+++++ + +   e l++  ++     +  v+ +    +++  ++k+qa ++ + eae++ a
  MMETSP0890-20130614|6303_1 296 YDMQDIQLKNEVEKTKLEIQeksAKMEAegKKAVKAAsDKLNERMTVRQReltELLSETRVQ-----VDTVNAESkeATQKLrFEKEQALQRLRLEAEQEAA 392
                 55555555555555444444444444444434443333444444444333111334444444.....44444333312222224444444444444444433 PP

>> PF13421.1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   8.4e-07    0.0057     165     208 ..     239     282 ..     232     285 .. 0.89
   2 !    3.0   0.9    0.0082        56     134     203 ..     333     405 ..     320     413 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 8.4e-07
   PF13421.1 165 elseklreaikkelaeyGleleellienislpeevekaldkrss 208
                 e+ + l ++++ke++e G+e+ ++li+n+ lpee+ +++  ++ 
  MMETSP0890-20130614|6303_1 239 EVVKVLIDQLNKEFKEQGVEIIDVLIQNVKLPEEIARQMSGKTL 282
                 566778899******************************99876 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0082
   PF13421.1 134 seqlrslivtr...fsdllkeskipvldlaanseelseklreaikkelaeyGleleellienislpeevekal 203
                 s++l + +++r   +++ll+e+++ v  ++a+s+e ++klr + ++ l+++ le e+         ++++k++
  MMETSP0890-20130614|6303_1 333 SDKLNERMTVRqreLTELLSETRVQVDTVNAESKEATQKLRFEKEQALQRLRLEAEQEAASLQATADATTKKI 405
                 4555555544444699*********************************999998876554334444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1485  (0.108616); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.77
# Mc/sec: 1702.35
//
Query:       MMETSP0890-20130614|6308_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   15.9   0.0     0.0039   15.4   0.0    1.1  1  PF02480.11 Alphaherpesvirus glycoprotein E
     0.0029   16.7   0.0     0.0044   16.1   0.0    1.2  1  PF12768.2  Cortical protein marker for cell polarity
     0.0083   15.3   0.9      0.017   14.3   0.6    1.4  1  PF08693.5  Transmembrane alpha-helix domain
  ------ inclusion threshold ------
      0.046   12.9   0.4      0.068   12.4   0.3    1.2  1  PF07423.6  Protein of unknown function (DUF1510)
      0.051   13.4   0.1        1.8    8.4   0.0    2.3  2  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
      0.085   12.2   0.1       0.16   11.3   0.1    1.4  1  PF06305.6  Protein of unknown function (DUF1049)
       0.11   11.4   0.0       0.17   10.8   0.0    1.2  1  PF04917.7  Bacterial shufflon protein, N-terminal constant region


Domain annotation for each model (and alignments):
>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-06    0.0039     341     404 ..     384     449 ..     362     461 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2e-06
  PF02480.11 341 pakpeartapyllllaavlgaavlllvvlllvlvcvtkrrrrkaye..krlspfspvYtsLPtnel 404
                 +++++++++  +  +a v+g+av+l+vv++++ ++ + +  rk++   +  ++++p+++ L ++e+
  MMETSP0890-20130614|6308_1 384 TSRTSSNKKSTKKNVALVVGLAVALAVVVIAAFAMIFSNYLRKRRLqrQFEDTKNPTFVELTSSEE 449
                 344455556666666667777777777777777776666655555443477899*********999 PP

>> PF12768.2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.2e-06    0.0044     204     262 ..     380     432 ..     336     444 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.2e-06
   PF12768.2 204 issifleksnsfssskdlkklsrgiVVlIsLaiAlgtvfLlgllgiilalirrkrqkys 262
                  +s+ +       +s+++k  ++ +  +++La+Al++v++ + + i  +++r++r + +
  MMETSP0890-20130614|6308_1 380 RRSVTSR------TSSNKKSTKKNVALVVGLAVALAVVVIAAFAMIFSNYLRKRRLQRQ 432
                 4444333......3344466667777789*********************999975544 PP

>> PF08693.5  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   8.6e-06     0.017       4      40 .]     391     427 ..     388     427 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.6e-06
   PF08693.5   4 dsslkttVaIAvgVviPVgvIalvLlaiLflvyRRkk 40 
                 ++s k++Va +vg ++ ++v++++  a+ f +y Rk+
  MMETSP0890-20130614|6308_1 391 KKSTKKNVALVVGLAVALAVVVIAAFAMIFSNYLRKR 427
                 5677889**9999999988888888888999998876 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   3.5e-05     0.068       1      67 [.     385     452 ..     385     461 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.5e-05
   PF07423.6   1 sRfekrskrrkanvvLniaiaiVvvlivivaaqllvgnskskkasad.eeeeeksedeekteeeevke 67 
                 sR   ++k+ k+nv+L + +a+++ ++vi a  ++++n   k+  +   e++++ +  e t++ee++e
  MMETSP0890-20130614|6308_1 385 SRTSSNKKSTKKNVALVVGLAVALAVVVIAAFAMIFSNYLRKRRLQRqFEDTKNPTFVELTSSEEKDE 452
                 7889999****************999999999999977766665554233333333344444444433 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.063   1.2e+02      45      65 ..     196     216 ..     185     223 .. 0.67
   2 ?    8.4   0.0    0.0009       1.8      44      77 ..     387     420 ..     336     427 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.063
   PF09716.5  45 elekkkknkKillisaiatal 65 
                 +++k  +nkK+++i++ ++ +
  MMETSP0890-20130614|6308_1 196 DVTKGGQNKKKVVIASYISSV 216
                 455555677777776666655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0009
   PF09716.5  44 delekkkknkKillisaiatalallvggalGlgi 77 
                 ++ +kk  +k+ +l+  +a ala++v +a+ + +
  MMETSP0890-20130614|6308_1 387 TSSNKKSTKKNVALVVGLAVALAVVVIAAFAMIF 420
                 567899999999************9999998765 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.3e-05      0.16      23      60 ..     399     436 ..     393     440 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.3e-05
   PF06305.6  23 llliafllGallglLlsvlfllklrrqlrrlqkqlkkl 60 
                 +l++ +++ +++++++++ ++++ +++ rrlq+q + +
  MMETSP0890-20130614|6308_1 399 ALVVGLAVALAVVVIAAFAMIFSNYLRKRRLQRQFEDT 436
                 45555666677777778888999999999***997765 PP

>> PF04917.7  Bacterial shufflon protein, N-terminal constant region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.7e-05      0.17       2      49 ..     391     438 ..     390     447 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.7e-05
   PF04917.7   2 kktdkGvaalevgaallivlllialaaeiledylkskewqvaaeqanr 49 
                 kk  k  +al vg+a+ + +++ia  a i+ +yl++++ q + e +++
  MMETSP0890-20130614|6308_1 391 KKSTKKNVALVVGLAVALAVVVIAAFAMIFSNYLRKRRLQRQFEDTKN 438
                 788888999******************************998877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      613  (0.0448362); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:00.98
# Mc/sec: 1129.71
//
Query:       MMETSP0890-20130614|6309_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-05   20.6  14.1    9.8e-05   20.1   9.7    1.1  1  PF01576.14 Myosin tail
    0.00094   18.8   1.5    0.00094   18.8   1.0    2.1  2  PF07889.7  Protein of unknown function (DUF1664)
  ------ inclusion threshold ------
      0.013   13.6   1.5      0.019   13.0   1.1    1.2  1  PF04587.10 ADP-specific Phosphofructokinase/Glucokinase conserved region
      0.034   13.8  16.8       0.12   12.0  11.6    2.0  1  PF12718.2  Tropomyosin like
      0.034   13.2  13.6      0.021   13.9   7.6    1.9  2  PF13851.1  Growth-arrest specific micro-tubule binding
       0.11   11.7   2.3       0.23   10.7   1.6    1.6  1  PF04799.8  fzo-like conserved region
       0.18   11.3   7.3       0.25   10.8   4.4    1.7  1  PF05266.9  Protein of unknown function (DUF724)
       0.19    9.7  12.4       0.38    8.7   8.6    1.5  1  PF06160.7  Septation ring formation regulator, EzrA
        0.2   11.4   5.1       0.33   10.6   2.3    2.3  2  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
       0.28   10.6   7.8       0.34   10.3   4.3    2.0  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.28    8.8   5.0        0.4    8.3   3.5    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.43   10.2  20.6        1.2    8.7   6.8    2.8  2  PF07926.7  TPR/MLP1/MLP2-like protein
       0.92    8.5  12.0       0.83    8.6   7.1    1.8  1  PF10234.4  Clusterin-associated protein-1
       0.94    9.8  10.9        8.2    6.8   4.4    3.0  3  PF09177.6  Syntaxin 6, N-terminal
          1    8.2   7.4        1.8    7.4   5.1    1.5  1  PF01544.13 CorA-like Mg2+ transporter protein
        2.4    7.9  15.5        6.6    6.6   0.2    3.1  3  PF08826.5  DMPK coiled coil domain like
        2.6    7.5   9.6        5.6    6.4   2.7    2.6  3  PF04048.9  Sec8 exocyst complex component specific domain
        2.9    7.7  19.8        6.1    6.7   9.8    3.1  3  PF14197.1  Centrosome localisation domain of PPC89
        4.1    7.0   8.9        1.7    8.3   3.8    2.2  2  PF00669.15 Bacterial flagellin N-terminal helical region
        4.6    7.5  10.0        3.1    8.0   4.4    2.4  3  PF06156.8  Protein of unknown function (DUF972)
        5.5    6.9   7.6        5.4    7.0   2.6    2.3  2  PF08702.5  Fibrinogen alpha/beta chain family
        7.1    6.4  10.0        2.1    8.1   0.3    3.2  3  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   9.7   1.6e-07   9.8e-05     246     404 ..      67     196 ..      39     228 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.6e-07
  PF01576.14 246 eeakrsleeesrerakLqaklrqlesdldslreqleeeseakaelerqlskanaeiaqwrskfeeegaaraeelEelkkklekkiseleeavealeakasslekaKsrlqseledlqieleranaaaselekkqknfdkvlaElkkkvdelqaeldtaq 404
                 +e++ +l  es++ a L++ l  +e+++ s r +++e+s   +e e+    ++  +++ rsk+e+e   r   lEe    l kk++e++++ e + +ka+ lek  + l  e + l   +++ + +a el                           a 
  MMETSP0890-20130614|6309_1  67 NELRAALHKESQRVASLENALFLAEKEATSCRLARDEASTRLSESEKVQRTLSGHLNSYRSKLEAEIETR-STLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQSYRDSA-EL---------------------------AR 196
                 4667777777777777777777777777777777777777777777777777777777777777777764.45666666677777777777777777777777777777777665555554444333.23...........................22 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.0   1.5e-06   0.00094      60     124 ..     112     176 ..     100     178 .. 0.93
   2 ?    0.4   0.0      0.74   4.6e+02      52     110 ..     167     225 ..     165     229 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.5e-06
   PF07889.7  60 asakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesles 124
                 ++ ++ Ls+++++  +kl+++ e+  + +ee+t++r+++++i++  +   +  e+Le++ + le 
  MMETSP0890-20130614|6309_1 112 EKVQRTLSGHLNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALER 176
                 457899******************************************************99996 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.74
   PF07889.7  52 lekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkq 110
                 lek  +a++  +  L+q +++  d+ +  +  +++ ++e+++ r++l a++++  ++++
  MMETSP0890-20130614|6309_1 167 LEKRAKALERERDLLAQAVQSYRDSAELARGDARSARDELQHTRDQLLALNNNHTNVNH 225
                 55666666666667777777777777777777777777777777777777777766665 PP

>> PF04587.10  ADP-specific Phosphofructokinase/Glucokinase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1   3.1e-05     0.019     188     268 ..      93     169 ..      68     174 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.1e-05
                 -SSGGGT---GGGSTTHHHHGGG-S-EEE---TT--T.....TT-HHHHHHHHHHHHHHH..HTT--EEE-------HHHHH CS
  PF04587.10 188 ddensrleikeelresleeigeqvdlailSGlqaleekysdgkeaearlkrvkedikllkk.ekgikvHlElAsiqdrelrk 268
                 +  + rl +++e   +l+e +e+v+   lSG   l+   s+ + + + +  ++e++++l+k  ++i+ H E+As++ + l k
  MMETSP0890-20130614|6309_1  93 EATSCRL-ARDEASTRLSE-SEKVQR-TLSGH--LNSYRSKLEAEIETRSTLEEELTSLRKkVQEIQQHYEFASTKAETLEK 169
                 3334444.57788888888.778876.57884..5554467777777888999******9989*************999876 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  11.6    0.0002      0.12      29     125 ..      72     179 ..      67     196 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0002
   PF12718.2  29 enekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae........altrriq...lLEeeleesekrLketteklreadkkaeeseRkvkaLEeerd 125
                    k  + ++sL++ +  +E+e    + + +ea + l+e+ek + +          +l+  i+   +LEeel +  k+++e  +  + a+ kae++e++ kaLE+erd
  MMETSP0890-20130614|6309_1  72 ALHKESQRVASLENALFLAEKEATSCRLARDEASTRLSESEKVQRTLSghlnsyrsKLEAEIEtrsTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERD 179
                 4556667788999999999999999999999999999999998888888898777755555542227***************************************98 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.67   4.2e+02      58      94 ..      67     103 ..      22     119 .. 0.75
   2 ?   13.9   7.6   3.3e-05     0.021      48     128 ..     106     183 ..      89     196 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.67
   PF13851.1  58 krlkepLkkaeeeveeLkkklkqyekdkqsLknlkak 94 
                 ++l++ L+k  ++v+ L+++l  +ek+ +s + ++ +
  MMETSP0890-20130614|6309_1  67 NELRAALHKESQRVASLENALFLAEKEATSCRLARDE 103
                 4677778888888888888887777777766655544 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.3e-05
   PF13851.1  48 klmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelyk 128
                  +++e +k ++ l+     +++ + +L+ ++++ +   ++L++l++k++e +++++  + + e+le+r + +erErd l +
  MMETSP0890-20130614|6309_1 106 TRLSESEKVQRTLSGH---LNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQ 183
                 4455555555555544...4556789**************************************************98874 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   0.00037      0.23     100     159 ..     115     177 ..      94     187 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00037
   PF04799.8 100 shqvqqelastfarleqqvdvtkkdleeeikelekeieklet....iqskakllrnkanllese 159
                 ++ +  +l+s +++le++++ t+++leee+++l k+++++++     ++ka +l ++a++le e
  MMETSP0890-20130614|6309_1 115 QRTLSGHLNSYRSKLEAEIE-TRSTLEEELTSLRKKVQEIQQhyefASTKAETLEKRAKALERE 177
                 33444567777888888886.5669**********99987551111567788888888888876 PP

>> PF05266.9  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.4    0.0004      0.25     110     178 ..     124     188 ..     102     193 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0004
   PF05266.9 110 eerkklekeiaekeieqqeleseiaelerkilelrrkeallkekkeaedkeiarlkseasklkqeledv 178
                  +r kle ei+ +     +le+e+  l +k++e++++ + ++ k e+ +k+ ++l+ e + l q++++ 
  MMETSP0890-20130614|6309_1 124 SYRSKLEAEIETR----STLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQSY 188
                 5788999999999....99********************************************999976 PP

>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.6   0.00061      0.38      75     215 ..      78     225 ..      59     304 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00061
   PF06160.7  75 nslpeieellfeaeelndkfrflk..akkelkeieelldeieedieeireeleeLkeseeknrkeveelkekYeelrktl...laksfsyGealdeLekqLeeleeefeqfeelte..sGdyleArevlekleeelealekkmeeiPe 215
                 ++++++e+ lf ae+++++ r+ +  a + l e e+  ++++ ++++ r++le  +e+ ++ ++e ++l++k +e++++    ++k+++  + +++Le + + l + ++++ +  e   Gd   Ar+ l++++++l al++   ++ +
  MMETSP0890-20130614|6309_1  78 QRVASLENALFLAEKEATSCRLARdeASTRLSESEKVQRTLSGHLNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQHYefaSTKAETLEKRAKALERERDLLAQAVQSYRDSAElaRGDARSARDELQHTRDQLLALNNNHTNVNH 225
                 6677777777777777777777542255566666666666777777777777777777777777777777777777765411145666667777777777777777777776655433688888888888888777777777666665 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.3   0.00054      0.33      60     121 ..     118     186 ..     105     196 .. 0.77
   2 ?    0.2   0.0      0.89   5.5e+02      64      96 ..     185     217 ..     180     224 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00054
   PF06148.6  60 lSgsLvglqeeleel.......esplaaarkkvesvrsklseveeeveskikekkdleeekellklllk 121
                 lSg+L +++++le         e +l+++rkkv+++++  + ++++ e+  k++k+le+e++ll   ++
  MMETSP0890-20130614|6309_1 118 LSGHLNSYRSKLEAEietrstlEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQ 186
                 899999999888754355555588888888888888888888888888888888888888877655544 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.89
   PF06148.6  64 Lvglqeeleelesplaaarkkvesvrsklseve 96 
                  ++++++ e  +++  +ar++++ +r++l + +
  MMETSP0890-20130614|6309_1 185 VQSYRDSAELARGDARSARDELQHTRDQLLALN 217
                 577888888889999999999999999987655 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.3   0.00054      0.34      63     143 ..     132     210 ..     102     227 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00054
   PF07106.8  63 qdqlellsdeelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeankevt 143
                 + ++++  +eel+ l ++++e+++  + +++++++lek  k+L++e   + l + +q+++ + e  +   +s +++ ++++
  MMETSP0890-20130614|6309_1 132 EIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERER--DLLAQAVQSYRDSAELARGDARSARDELQHTR 210
                 4456677789999******************************9988..9999******9998877776666666666654 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.5   0.00064       0.4      31     118 ..     106     192 ..      70     238 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00064
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01496.14  31 rrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk 118
                  rl+e e+  r l+  ++  +++l+ e e +++ e+ e+  l+++++e+++  + + ++ e+Lek+ + le +r +l ++ ++  +++
  MMETSP0890-20130614|6309_1 106 TRLSESEKVQRTLSGHLNSYRSKLEAEIETRSTLEE-ELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQSYRDSA 192
                 466667777777777777777777766666666665.577777777777777777777777777777777777777777777776654 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.8    0.0019       1.2      57     119 ..      76     155 ..      68     156 .. 0.89
   2 ?    7.4   8.8    0.0049       3.1      10     103 ..     120     213 ..     113     228 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0019
   PF07926.7  57 tiqeLtklkkelaelqkeaselrkeadsakael..................neleekweeeksmLevelselekkieelne 119
                  +q + +l+++l +++kea+++r  +d+a+  l                  ++le+++ e +s Le+el +l+kk++e+++
  MMETSP0890-20130614|6309_1  76 ESQRVASLENALFLAEKEATSCRLARDEASTRLsesekvqrtlsghlnsyrSKLEAEI-ETRSTLEEELTSLRKKVQEIQQ 155
                 4789999****************************************98855555555.5689****************97 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0049
   PF07926.7  10 eelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmL 103
                   l++++s+ +a  e+ ++l+++l + +++++e q+ Ye   +k  +  +  ++l+ e ++l + +++ r++a+ a+     ++++ +  +++L
  MMETSP0890-20130614|6309_1 120 GHLNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQSYRDSAELARGDARSARDELQHTRDQL 213
                 5678889999999999999********************9999988889999999999999999999999999999999999888888888877 PP

>> PF10234.4  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.1    0.0013      0.83     120     218 ..      71     169 ..      40     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0013
   PF10234.4 120 kaarqlaseitekgakLydlLekeldlkesrqkalsrplelaevekalkeaikelaeelqklkaelenlksdeanLeekiekkkqelertqkrLkalqs 218
                  a+++ ++ + +   +L+   ++ +  + +r++a +r +e ++v+++l   +++  ++l+   ++ ++l+++ ++L +k+++ +q++e ++++ ++l++
  MMETSP0890-20130614|6309_1  71 AALHKESQRVASLENALFLAEKEATSCRLARDEASTRLSESEKVQRTLSGHLNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEK 169
                 455666777777778887666666799*************************************************************99999999986 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.014       8.4      39      90 ..      64     115 ..      48     120 .. 0.80
   2 ?    6.8   4.4     0.013       8.2       7      89 ..     101     184 ..     100     191 .. 0.74
   3 ?   -0.5   0.1       2.4   1.5e+03      21      47 ..     181     209 ..     168     221 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.014
   PF09177.6  39 eltkeLenalesiewdledLeeavsvveknpekfglseeeisrRkqfvaeir 90 
                    +eL++al++ ++ +  Le+a  ++ek+ ++++l ++e s R +  ++++
  MMETSP0890-20130614|6309_1  64 MPPNELRAALHKESQRVASLENALFLAEKEATSCRLARDEASTRLSESEKVQ 115
                 45689************************************99977666665 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.013
   PF09177.6   7 keevqksidkleslyrsweelrsdstsskelk.eltkeLenalesiewdledLeeavsvveknpekfglseeeisrRkqfvaei 89 
                 ++e+++ +++ e++ r+++  +++ +s+ e++ e+++ Le++l s++++++++++  + ++ + e  + +++ ++r ++++a++
  MMETSP0890-20130614|6309_1 101 RDEASTRLSESEKVQRTLSGHLNSYRSKLEAEiETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQA 184
                 677777778888888877777777775555543778888999999999999998888888888888888888888888777765 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 2.4
   PF09177.6  21 yrsweelrsdst..sskelkeltkeLena 47 
                 + +  +  +ds   ++  + ++++eL+ +
  MMETSP0890-20130614|6309_1 181 LAQAVQSYRDSAelARGDARSARDELQHT 209
                 33333333333334334455555555443 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.1    0.0028       1.8     129     233 ..     121     224 ..      71     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0028
  PF01544.13 129 kleeeldeledeledetkkellreilqlrrelvrlrrallplrdvlkrllrrkdkkllteedkey...lrdlldelerllemaealrerlrslqdtylsllsnrlNri 233
                 +l++ + +le e+  et+  l +e++ lr+++ ++++++        ++l+ k++k l++e+ ++    +  +d +e +  +a + r+ l++ +d++l+l +n++N +
  MMETSP0890-20130614|6309_1 121 HLNSYRSKLEAEI--ETRSTLEEELTSLRKKVQEIQQHYEFASTKA-ETLE-KRAKALERERDLLaqaVQSYRDSAELARGDARSARDELQHTRDQLLALNNNHTNVN 224
                 3444455556666..88888889999*********88888888877.5555.34444444432221237777777777999***********************9976 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2     0.011       6.6      22      56 ..      96     130 ..      89     130 .. 0.84
   2 ?    6.5   6.0     0.011       6.8       4      54 ..     127     177 ..     125     190 .. 0.61
   3 ?   -2.2   0.0       5.9   3.7e+03      16      26 ..     282     292 ..     269     296 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.011
   PF08826.5  22 kvkaanlafeskLkeaEkknreLeeeleqLkkemE 56 
                   + a  +++ +L e+Ek  r L  +l++ + ++E
  MMETSP0890-20130614|6309_1  96 SCRLARDEASTRLSESEKVQRTLSGHLNSYRSKLE 130
                 5566777899*****************99988876 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.011
   PF08826.5   4 sALeaEirakQslqeeLekvkaanlafeskLkeaEkknreLeeeleqLkke 54 
                 s LeaEi ++  l+eeL+  ++  ++ +     a  k   Le+  + L +e
  MMETSP0890-20130614|6309_1 127 SKLEAEIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERE 177
                 67***************8655554444444444444444444443333333 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 5.9
   PF08826.5  16 lqeeLekvkaa 26 
                 +  eL  v+ a
  MMETSP0890-20130614|6309_1 282 IDSELSSVQRA 292
                 55666666665 PP

>> PF04048.9  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.7     0.009       5.6      33     106 ..      94     168 ..      74     186 .. 0.76
   2 ?    3.9   0.1     0.054        34      79     123 ..     183     227 ..     178     228 .. 0.84
   3 ?   -3.1   0.0       7.8   4.8e+03      42      65 ..     326     349 ..     317     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.009
   PF04048.9  33 dtsvglahrlkef.eelkkqiekaLqevvnehhqgfnssigsYskilssitesqekirelKesleeakkklstrk 106
                  ts  la+++ +     +++++++L    n +  ++   i++ s++ +++t+ ++k++e++++ e a +k +t +
  MMETSP0890-20130614|6309_1  94 ATSCRLARDEASTrLSESEKVQRTLSGHLNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLE 168
                 55666666554431467899******************************************9887766544433 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.054
   PF04048.9  79 ssitesqekirelKesleeakkklstrkkeLkeLnaesakykevi 123
                 + +++ +++ +  + + ++a+ +l+ ++++L  Ln++  ++++ +
  MMETSP0890-20130614|6309_1 183 QAVQSYRDSAELARGDARSARDELQHTRDQLLALNNNHTNVNHYL 227
                 566777777788899999******************999888765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 7.8
   PF04048.9  42 lkefeelkkqiekaLqevvnehhq 65 
                 ++ f+ +  + ++++q+ v+e+h+
  MMETSP0890-20130614|6309_1 326 KRTFSSTPPNADDTVQSAVDENHT 349
                 566777778889999999999986 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4       1.7     1e+03      26      44 ..      92     110 ..      69     130 .. 0.63
   2 ?    4.2   4.0      0.06        37      17      65 ..     104     152 ..      90     156 .. 0.62
   3 ?    6.7   9.8    0.0098       6.1       9      69 .]     138     212 ..     127     212 .. 0.67

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.7
   PF14197.1  26 ielksLnkErdsalrqLgv 44 
                  e  s +  rd+a ++L++
  MMETSP0890-20130614|6309_1  92 KEATSCRLARDEASTRLSE 110
                 4445555555556665554 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.06
   PF14197.1  17 ltrkvqvheielksLnkErdsalrqLgvAyeelneLkaevealrkELee 65 
                 ++++++ +e    +L+   +s+ ++L+  +e+   L +e+ +lrk+ +e
  MMETSP0890-20130614|6309_1 104 ASTRLSESEKVQRTLSGHLNSYRSKLEAEIETRSTLEEELTSLRKKVQE 152
                 5555555565555666666666666666666666666666666665443 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0098
   PF14197.1   9 tLrnrldsltrkvqvhe..............ielksLnkErdsalrqLgvAyeelneLkaevealrkELeeqlar 69 
                 tL+++l+sl++kvq  +                 k+L +Erd  +++ ++ ++ ++  + + ++ r EL++++++
  MMETSP0890-20130614|6309_1 138 TLEEELTSLRKKVQEIQqhyefastkaetleKRAKALERERDLLAQAVQSYRDSAELARGDARSARDELQHTRDQ 212
                 466666666666666666666666666555599999*****998888877555555556678888888***9986 PP

>> PF00669.15  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.8    0.0027       1.7      44     129 ..     133     224 ..     100     231 .. 0.82
   2 ?   -3.0   0.0       8.4   5.2e+03      80      87 ..     284     291 ..     268     310 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0027
  PF00669.15  44 taisvslrsqinglsqlsrnnslgisrlqtaqgaleelkdalqrlkelavqaandstssa.....drasaqaelqqliselnria.nttsfN 129
                      +l+ ++++l + +++ +   +  +t    le+ ++al+r ++l++qa ++  +sa     d +sa++elq  +++l  +  n+t++N
  MMETSP0890-20130614|6309_1 133 IETRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQSYRDSAelargDARSARDELQHTRDQLLALNnNHTNVN 224
                 55667899999*********************************9999888888888777777999*************9984431344444 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 8.4
  PF00669.15  80 elkdalqr 87 
                 +  +++qr
  MMETSP0890-20130614|6309_1 284 SELSSVQR 291
                 22222222 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3       0.9   5.6e+02      13      58 ..      69     115 ..      67     135 .. 0.75
   2 ?    8.0   4.4    0.0049       3.1       7      79 ..     105     182 ..      99     189 .. 0.78
   3 ?    7.0   3.0      0.01       6.4       5      81 ..     138     216 ..     134     226 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.9
   PF06156.8  13 leeqleelleeleelkkelkelleenaelkleneklrerleelee.e 58 
                 l   l++  + +++l++ l    +e ++ +l  ++  +rl+e+e+ +
  MMETSP0890-20130614|6309_1  69 LRAALHKESQRVASLENALFLAEKEATSCRLARDEASTRLSESEKvQ 115
                 66677788888899999999999999999999999999999887731 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0049
   PF06156.8   7 fdklseleeqleelleeleelkkelkelleenaelkleneklrerleelee.....eekkkekkkkkkklgegkdnLa 79 
                  ++lse e+  ++l  +l++ +++l++ +e  ++l+ e ++lr++++e+++     ++k+++ +k++k l++ +d La
  MMETSP0890-20130614|6309_1 105 STRLSESEKVQRTLSGHLNSYRSKLEAEIETRSTLEEELTSLRKKVQEIQQhyefaSTKAETLEKRAKALERERDLLA 182
                 56777778888888899999*****************************99887754455555555555666666665 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.01
   PF06156.8   5 elfdklseleeqleelleeleelkkelkelleenaelkleneklrerleelee..eekkkekkkkkkklgegkdnLakl 81 
                  l ++l++l ++++e+++++e   ++ ++l ++ ++l+ e + l + +++ ++  e ++ +++++ ++l++ +d+L  l
  MMETSP0890-20130614|6309_1 138 TLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALERERDLLAQAVQSYRDsaELARGDARSARDELQHTRDQLLAL 216
                 4566667777777777666666666666677777777777777777777666544334444555555566777766655 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.6    0.0087       5.4      35     132 ..      77     176 ..      68     179 .. 0.89
   2 ?    1.0   0.1      0.62   3.8e+02      33     122 ..     201     291 ..     192     294 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0087
                 CHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  35 dkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekki..ililekkilaqesqirvLqevlrsneskiqrLeqdiaqker 132
                 ++++ +len L  ++++ ++ +    + ++ l e +k +   +   +++ ++le +i    +le+  ++  +++++ q+ ++  + k + Le+  + +er
  MMETSP0890-20130614|6309_1  77 SQRVASLENALFLAEKEATSCRLARDEASTRLSESEKVQRTLSGHLNSYRSKLEAEIetRSTLEEELTSLRKKVQEIQQHYEFASTKAETLEKRAKALER 176
                 689999***************9999999999999999999999999*********998778899999999999******999999999999998777665 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.62
                 CCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCH.HHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  33 dvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdn.dniesavskslekki.ililekkilaqesqirvLqevlrsneskiqr 122
                 + + ++++ +++L  l+n++++++++ +    +    ++q+ +  +++ +++ ++ +++i  +++e  ++    ++++Lq+ ++s  s +qr
  MMETSP0890-20130614|6309_1 201 SARDELQHTRDQLLALNNNHTNVNHYLNGGRGQTFIGKPQQRPLlSAKLESIGDE-QSIIaDTDFELADDDLLLRVDALQSRIDSELSSVQR 291
                 5567788888899999999999999988766666555555555413444445555.555566777777777778888888888888777775 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.4      0.11        70      30      47 ..     139     156 ..     127     159 .. 0.75
   2 ?    8.1   0.3    0.0033       2.1      26      52 ..     163     189 ..     162     191 .. 0.90
   3 ?   -1.6   0.1       3.6   2.2e+03      25      42 ..     201     218 ..     198     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.11
  PF07716.10  30 leervkeLeeeNaqLrqk 47 
                 lee++ +L+++ ++++q 
  MMETSP0890-20130614|6309_1 139 LEEELTSLRKKVQEIQQH 156
                 677777777777777776 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0033
  PF07716.10  26 keeeleervkeLeeeNaqLrqkveqLe 52 
                 k e le+r+k+Le+e + L q v++++
  MMETSP0890-20130614|6309_1 163 KAETLEKRAKALERERDLLAQAVQSYR 189
                 6789****************9999876 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 3.6
  PF07716.10  25 akeeeleervkeLeeeNa 42 
                    +el+++  +L + N+
  MMETSP0890-20130614|6309_1 201 SARDELQHTRDQLLALNN 218
                 567899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1363  (0.0996928); expected 273.4 (0.02)
Passed bias filter:                      630  (0.0460796); expected 273.4 (0.02)
Passed Vit filter:                       118  (0.00863078); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.20u 0.44s 00:00:01.64 Elapsed: 00:00:01.00
# Mc/sec: 1006.47
//
Query:       MMETSP0890-20130614|6310_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2287  (0.167276); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.38u 0.43s 00:00:01.80 Elapsed: 00:00:01.04
# Mc/sec: 981.58
//
Query:       MMETSP0890-20130614|6315_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-06   26.4   0.0    3.6e-06   26.2   0.0    1.0  1  PF01593.19 Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.6e-10   3.6e-06     308     449 ..       8     148 ..       2     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.6e-10
                 CEECEECCCS....CCS-EEEEECECCCCC..HCCSEEEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH.SSB--S..EEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHH CS
  PF01593.19 308 dlfgllvsds....asrgelvldwskssgs..pkrpvllsyvlgdaareleslsdeellervledLrkllgnedvpdpk..dtvvtrWstdplargsysyvsvgssgddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAari 449
                 dl+g++  ++    ++  + ++  s ++ +  p  ++ll y++g  +  +++l++e++l++v    r+ l ++d+p pk        W + +++++   + +   +   +++  ++  p+ ++ G++ +++    + ++v+ Gl  A+ i
  MMETSP0890-20130614|6315_1   8 DLPGFGNLNPrsqnIRTLGTIWSSSLFPNRcpPEYNLLLNYIGGSRDVAIADLTPEQILQQVDTGCRATLLKPDAPPPKllG--LKLWPK-AIPQYELRHQPDILD--KLDQFESKF-PGCYLGGNYRTGV---AFGDCVQFGLDQANTI 148
                 678888888844555555555555555555999*************************************999******551..569999.999998888888888..999999999.8**********99...8999999999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 703.19
//
Query:       MMETSP0890-20130614|6314_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:01.02
# Mc/sec: 1494.20
//
Query:       MMETSP0890-20130614|6318_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    7.3   9.0        2.4    6.6   6.3    1.3  1  PF07227.6 Protein of unknown function (DUF1423)


Domain annotation for each model (and alignments):
>> PF07227.6  Protein of unknown function (DUF1423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.3   0.00017       2.4     293     422 ..     179     303 ..     160     320 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00017
   PF07227.6 293 deiaevvqeavkkkevvaeeklrllkkarvildaldreleekakevselkaerqkkkeqidelesivrlkqaeaemfqkkadearkeaerlkrivlakkekieeeYaskllklrleeaeeekrkkleelk 422
                 d++ + +  a ++  + ae+kl +l     +l+a     + ++++ +++  e  + + + d le  ++  +a ++ fq+ a++a+ + e + r  l  ++k   e  ++ l lr++ a+e+ + +  +l 
  MMETSP0890-20130614|6318_1 179 DQRRAATLSASEQARADAEQKLAFLSGRDKALEASV---DAQLRDSHDKAREALELRARSDALEVALKAERARSQQFQLEAEQAKADLEDVSRA-LDNEQKWQLELQER-LDLRIQLAKEREQDLAQRLA 303
                 333334444555555678888888888888887765...56899999999999999**********************************9995.45666777776665.46778888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       745  (0.0544909); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.43s 00:00:01.21 Elapsed: 00:00:00.70
# Mc/sec: 1482.32
//
Query:       MMETSP0890-20130614|6320_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       750  (0.0548566); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|6321_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.3   0.1    2.9e-11   42.9   0.0    1.8  1  PF04564.10 U-box domain
    5.8e-05   22.4   0.1     0.0014   18.0   0.0    2.9  2  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00071   18.9   0.1     0.0048   16.2   0.0    2.3  3  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.043   13.5   1.2       0.12   12.1   0.2    2.1  2  PF05886.6  Orthopoxvirus F8 protein
       0.11   11.9   1.4       0.26   10.7   1.0    1.5  1  PF04120.7  Low affinity iron permease


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.1e-14   2.9e-11       2      71 ..     264     335 ..     263     337 .. 0.92

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.1e-14
                 -GGGB-TTT-SB-SSEEE.-TTT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHC CS
  PF04564.10   2 PdefldpitlelmkdPvi.lPsgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfleek 71 
                 P ef++p+t  ++++Pv+ l +g +++rs+ie++l  + k dP+t ++     ++ pn++l e ++++ +++
  MMETSP0890-20130614|6321_1 264 PQEFICPLTQKIFIEPVLlLTDGRSFERSAIERWLAIHPKQDPITyKMYDFPLQIAPNRALLELVNRWRHAR 335
                 99***************736899**********************77777799***************8776 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   3.9e+02      36      46 ..      92     102 ..      90     114 .. 0.78
   2 !   18.0   0.0   5.3e-07    0.0014      10      45 ..     266     299 ..     260     308 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.14
                 EHHHHHHHHHH CS
   PF13445.1  36 srealeklakg 46 
                 ++eal+kla++
  MMETSP0890-20130614|6321_1  92 CEEALKKLASD 102
                 99*******93 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 5.3e-07
                 X-B-TTT-S.-SS....EEEES.---EEEHHHHHHHHH CS
   PF13445.1  10 ifaCpiske.qsteqnpPvvLp.CGhvisrealeklak 45 
                  f+Cp +++ + +    Pv+L   G+ ++r a+e+++ 
  MMETSP0890-20130614|6321_1 266 EFICPLTQKiFIE----PVLLLtDGRSFERSAIERWLA 299
                 7**********99....**6555************987 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06    0.0048      11      43 ..     266     298 ..     263     308 .. 0.87
   2 ?   -1.5   0.0      0.59   1.6e+03      11      25 ..     302     316 ..     299     318 .. 0.79
   3 ?   -2.7   0.0       1.4   3.8e+03      12      19 ..     420     427 ..     417     429 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.8e-06
                 X-B-TTT-SB-SSEEEES----EEEHHHHHHHH CS
   PF11789.3  11 slkCpltlkpfkePvtskkCnHvFEkeaIlkml 43 
                 +  Cplt+k f ePv   +   +FE++aI++ l
  MMETSP0890-20130614|6321_1 266 EFICPLTQKIFIEPVLLLTDGRSFERSAIERWL 298
                 567***************************998 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.59
                 X-B-TTT-SB-SSEE CS
   PF11789.3  11 slkCpltlkpfkePv 25 
                 ++++p+t k +  P+
  MMETSP0890-20130614|6321_1 302 PKQDPITYKMYDFPL 316
                 7899***99888775 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.4
                 -B-TTT-S CS
   PF11789.3  12 lkCpltlk 19 
                  +Cpl+ k
  MMETSP0890-20130614|6321_1 420 YRCPLSPK 427
                 57888865 PP

>> PF05886.6  Orthopoxvirus F8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   3.8e+03      39      49 ..       8      18 ..       6      20 .. 0.89
   2 ?   12.1   0.2   4.3e-05      0.12      14      35 ..     369     390 ..     366     396 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.4
   PF05886.6 39 nvkrftneemc 49
                 vkr++  emc
  MMETSP0890-20130614|6321_1  8 QVKRMALPEMC 18
                59********9 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.3e-05
   PF05886.6  14 qqeqeqhrprtppsyeeiakyG 35 
                 qqeqe++ p tpp+  +i k G
  MMETSP0890-20130614|6321_1 369 QQEQENKNPSTPPTSAKIKKKG 390
                 9*****************9988 PP

>> PF04120.7  Low affinity iron permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   9.5e-05      0.26      50     130 ..     143     225 ..     137     229 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.5e-05
   PF04120.7  50 tiitFLmvfLiqntqnrddaalqlkldeLiaavknaknkl...igleelteeeleelakeyerlaeaaeereevdkaesseaae 130
                 +++  L+  L+q+    d++   +++ +++++++ +++k+     +++ +   + ++++e++r+a+ +ee+e+ +++++++++e
  MMETSP0890-20130614|6321_1 143 SVLGLLLLALVQEGVATDEEDARQQIAQIVRQQE-DEEKFtdlFYVNDQEAACIGRFSEECSRAAHISEEEEKEERSNNHAEKE 225
                 677889*************************987.6666611155566666778888999999888888777666665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:00.61
# Mc/sec: 1807.09
//
Query:       MMETSP0890-20130614|6326_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-51  173.4   0.0    8.6e-51  173.2   0.0    1.0  1  PF01593.19 Flavin containing amine oxidoreductase
    2.9e-17   62.3   0.1    6.6e-17   61.1   0.0    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    1.4e-07   30.6   0.0    1.4e-06   27.3   0.0    2.1  1  PF01266.19 FAD dependent oxidoreductase
      7e-06   26.2   0.0    2.1e-05   24.7   0.0    1.8  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    4.4e-05   21.7   0.1    6.4e-05   21.2   0.0    1.2  1  PF00743.14 Flavin-binding monooxygenase-like
    0.00043   20.1   0.0    0.00078   19.2   0.0    1.4  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0017   16.8   0.1     0.0044   15.4   0.1    1.7  2  PF03486.9  HI0933-like protein
     0.0023   17.8   0.0     0.0047   16.8   0.0    1.5  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
     0.0046   15.9   0.0     0.0083   15.1   0.0    1.3  1  PF01946.12 Thi4 family
  ------ inclusion threshold ------
       0.02   13.6   0.0       0.03   13.0   0.0    1.2  1  PF00890.19 FAD binding domain
      0.037   12.2   0.1        1.6    6.9   0.0    2.1  2  PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
      0.037   12.9   0.0       0.06   12.2   0.0    1.3  1  PF01494.14 FAD binding domain
      0.086   12.4   0.0       0.19   11.3   0.0    1.5  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
       0.15   11.0   0.0        0.2   10.6   0.0    1.3  1  PF12831.2  FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.0   8.8e-54   8.6e-51       1     413 [.      75     485 ..      75     486 .] 0.92

  Alignments for each domain:
  == domain 1    score: 173.2 bits;  conditional E-value: 8.8e-54
                 ----HHHHHHHH---EEEEEESSS-------EEE---..-EEE----EE-TTTCHHHHHHHHHHHCTSEEEEEE-S-TCEEEEEEECCTCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHCTHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEETSCEEEEEECSS.....EEEESEEEE-S-HHHCCCSEEES-EEHHHHHHH.HHSEEE-EEEEEEEESSCCSGGT-CEECEECCCS..CCS-EEEEECECCCCCHCCSEEEEEEEECCC.....HHHTTS-HHHHHHHHHHHHHHHHHH..SSB--SEEEEEETTTSTTT---ECCHBHHHHHHHHHHHH CS
  PF01593.19   1 laGLaAArqLlqaGfdVtvlEArdrvGGRirtfrskgdgylielGamwftgvygnllnlllelglelnlelfpftqkvflrlkygggvpkekdddlepeegllsllssllefrrslespeslsqalesglllaepellelalesfssllsaqgflersleslfralldgalgflefensarlallslklndqeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkegdgvtvttedgr.....tykaDaVvvTlplgvlkkilflPplpdakqeai.rrlgfgsvnkvileferpfwpenldlfgllvsds..asrgelvldwskssgspkrpvllsyvlgdaa.....releslsdeellervledLrkllgne.dvpdpkdtvvtrWstdplargsysyvsvgssgddrpala 413
                 l+GL++A++L++aG++ t++EArd +GG+++ ++++ dg +ie+G ++f+g+y+n+lnll+el+l+++l+++ +++++  r k g+   +e++   +++ ++ +++++ ++ ++sl ++++   +l++ ll+ + ++ ++++ s  +++++ g+++r +++ f a+  ++ + +++ +s++  l+ ++ + +e dg++  +++  +    l+ +++++ +  gg+v ++k++++i  +gd++  +++  r     +++aD +++++p++ lk   f P  +   + ++ +   + +v++++l+ +  + +   +l+gl +s+s  +s +++     + ++  + +  ls+v ++         +++ sd+e++++++++L +l++ + ++ +      ++ ++++++r++y++++ ++   +rp++a
  MMETSP0890-20130614|6326_1  75 LSGLSCAKYLSDAGHEPTIYEARDVLGGKVSAWQDE-DGDWIETGLHIFFGAYPNMLNLLAELNLRNRLQWKAHRMSFAMREKPGEFTSFEFPQNVPAPFNM-AYAILTNDEMLSLVDKIRMIPGLLPMLLQGQQFIDAQDEVSVLQFMQKYGMPDRVNKEIFIAMAKALDFLDPEDMSMTVILTAMNRFINEADGSQTAFLD-GNQSDRLCAPIKEYIKNCGGNVYTSKPLREIIIDGDDDMHQIKCLRlanneIIQADEYISAMPVDCLK--RFIPRQWS-TMPFFrQLDELEGVPVINLQIWLNKRLST-SLDGLAFSRSplLSVYADLAKSVREYS--SDNSILSLVFAPVVpndtnINWLARSDDEIIHATVQELERLFPGDiSINNV-----RKAAVVRTPRSVYAAIPGRNK--YRPSQA 485
                 7**********************************9.599**********************************************************9776.****************************************************************************************************.9999999****************************6665555555555666*****************..********.89***89999*************999996.9*********88666666666666555..77788888888888888888899999999**************74244444.....499******************..**9987 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   6.7e-20   6.6e-17       1      68 []      70     136 ..      70     136 .. 0.96

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 6.7e-20
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasvev.dgirvdygahifhgsgyyenlrrllrel 68 
                 I+G+GlsGl++A +L++ag++ +++e+rd lGG+++ +++ dg  +++g+hif+g   y+n+ +ll+el
  MMETSP0890-20130614|6326_1  70 IIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGKVSAWQDeDGDWIETGLHIFFG--AYPNMLNLLAEL 136
                 9***************************************677************..69******9987 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.5e-09   1.4e-06       1      71 [.      67     203 ..      67     451 .. 0.69

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.5e-09
                 EEEEE----HHHHHHHHHHHTT-EEEEEESS.STTSSCGGGS...-EEE-SST......CHCSCHHHHHHHHHHHHHHHH........................................................H CS
  PF01266.19   1 dvviiGgGivGlstAyeLarrglkVtllekg.diasgaSgrn...gglihagl......lkerdprllrlalesldllre........................................................l 71 
                 +++iiGgG +Gls+A +L+ +g++ t++e++  +++  S+     g +i +gl      + +    l++l l+ +  +++                                                        l
  MMETSP0890-20130614|6326_1  67 KIAIIGGGLSGLSCAKYLSDAGHEPTIYEARdVLGGKVSAWQdedGDWIETGLhiffgaYPNMLNLLAELNLRNRLQWKAhrmsfamrekpgeftsfefpqnvpapfnmayailtndemlslvdkirmipgllpmlL 203
                 599****************************4555555544356677887777887766444445777777777777776555555555555555555555555555555555555555555555555555555541 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.1e-08   2.1e-05       1      35 [.      67     101 ..      67     109 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.1e-08
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrll 35 
                 +++++GGG++Gl +A +l++ g++ t+ e+rd l 
  MMETSP0890-20130614|6326_1  67 KIAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLG 101
                 69*****************************9886 PP

>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.6e-08   6.4e-05       1      39 [.      65     103 ..      65     114 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6.6e-08
  PF00743.14   1 akkvaviGaGvsGlasikccleegleptcfersddiGGl 39 
                 +kk+a+iG+G+sGl+  k   + g ept +e  d +GG 
  MMETSP0890-20130614|6326_1  65 KKKIAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGK 103
                 69***********************************95 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     8e-07   0.00078       1      32 [.      67      98 ..      67     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 8e-07
                SEEEE----HHHHHHHHHHHTTSEEEEECSSS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07992.9  1 dvviiGgGpaGlsaakdlaqkglkvaliekeg 32
                +++iiGgG  Gls+ak+l ++g++ +++e+ +
  MMETSP0890-20130614|6326_1 67 KIAIIGGGLSGLSCAKYLSDAGHEPTIYEARD 98
                689*************************6644 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   4.6e-06    0.0044       2      39 ..      67     104 ..      66     106 .. 0.95
   2 ?   -3.0   0.0       1.7   1.7e+03     102     159 ..     273     334 ..     257     337 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.6e-06
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakklgrKi 39 
                 ++++iGgG +Gl +A  ++++g++ +++++ + lg K+
  MMETSP0890-20130614|6326_1  67 KIAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGKV 104
                 799********************************998 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.7
   PF03486.9 102 Fpvsdkakdivdallkelkeagvkirletevksvekeed.gafrvkt...kseeeleadklv 159
                 F + +++ ++   +++ +k+ g ++++++ ++++  + d  ++++k+    ++e ++ad+ +
  MMETSP0890-20130614|6326_1 273 FLDGNQSDRLCAPIKEYIKNCGGNVYTSKPLREIIIDGDdDMHQIKClrlANNEIIQADEYI 334
                 66777888888888899999999999999999986554313344443222577777777666 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.8e-06    0.0047       1      42 [.      69     109 ..      28     150 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 4.8e-06
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkays 42 
                 +++G+G+ Gl  a +l ++g +p  i+++++  Gg+++ ++ 
  MMETSP0890-20130614|6326_1  69 AIIGGGLSGLSCAKYLSDAGHEP-TIYEARDVLGGKVSAWQD 109
                 57888888888888888888886.788888888888887765 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.5e-06    0.0083      15      55 ..      63     103 ..      48     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.5e-06
                 HTEEEEEEE-------HHHHHHHTSTS-EEEEESSS----- CS
  PF01946.12  15 yaesDvvivGaGssGltaayylakkdlkvailerklsiGGG 55 
                   ++ ++i+G+G sGl++a+yl+ ++   +i e++  +GG 
  MMETSP0890-20130614|6326_1  63 SQKKKIAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGK 103
                 456789***************************99999985 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.1e-05      0.03       2      40 ..      68     107 ..      67     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.1e-05
                 EEEE-------HHHHHHHCHTT-EEEE-SS-CCGS.GGGG CS
  PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqetgg.ataw 40 
                 + +iG+Gl+Gl++A  +++ag++ ++ e+ ++ gg  +aw
  MMETSP0890-20130614|6326_1  68 IAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGkVSAW 107
                 57********************999999999999855555 PP

>> PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0016       1.6       2      59 ..      65     118 ..      64     137 .. 0.79
   2 ?    3.2   0.0      0.02        19     182     245 ..     259     318 ..     245     334 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0016
   PF06100.6   2 nksayliGsGlaalaaavflirdgqmdGekihileeldlaGGsldGaeleelGyvvrG 59 
                 +k++ +iG+Gl++l++a +l      +G++ +i e  d+ GG +   + e+  ++  G
  MMETSP0890-20130614|6326_1  65 KKKIAIIGGGLSGLSCAKYLSD----AGHEPTIYEARDVLGGKVSAWQDEDGDWIETG 118
                 68899**************954....47788999*99999999988877776666655 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.02
   PF06100.6 182 lkrfihhisglkdlsalkftkynqyeslvlPlvkylkshgvdfeynvkvedievdiskskkvak 245
                 ++rfi++ +g        f   nq + l  P+++y+k+ g ++   + + +i +d  ++ +  k
  MMETSP0890-20130614|6326_1 259 MNRFINEADGS----QTAFLDGNQSDRLCAPIKEYIKNCGGNVYTSKPLREIIIDGDDDMHQIK 318
                 77788777664....4578899******************999999999999997666654433 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05      0.06       3      32 ..      67      96 ..      65     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.1e-05
                CEEE--------HHHHHHHHH.HHEEEEES CS
  PF01494.14  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                +++I+G+G++Gl+ a+ Ls aG + ++ e 
  MMETSP0890-20130614|6326_1 67 KIAIIGGGLSGLSCAKYLSDAGHEPTIYEA 96
                679*******************88777665 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.19       1      31 [.      67      97 ..      67     110 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
                EEEEE-------HHHHHHHTTEEEEEEE-S- CS
  PF01210.18  1 kvavlGaGswGtalAkvlaenghevrlWvre 31
                k+a++G+G  G + Ak+l++ ghe +++  +
  MMETSP0890-20130614|6326_1 67 KIAIIGGGLSGLSCAKYLSDAGHEPTIYEAR 97
                89********************999998766 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002       0.2       2      40 ..      68     106 ..      67     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0002
   PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmlts 40 
                 ++++GGg++G+ +A   + +G + ++ e r+vlGG +++
  MMETSP0890-20130614|6326_1  68 IAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGKVSA 106
                 68*********************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.77
# Mc/sec: 1512.51
//
Query:       MMETSP0890-20130614|6328_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 605.87
//
Query:       MMETSP0890-20130614|6329_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-09   35.5   0.6    2.5e-08   33.5   0.1    2.2  3  PF13410.1 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.24   3.3e+03      30      43 ..       6      19 ..       3      34 .. 0.75
   2 ?   -1.7   0.0      0.18   2.5e+03      57      67 ..      91     103 ..      58     106 .. 0.60
   3 !   33.5   0.1   1.8e-12   2.5e-08      11      68 ..     107     165 ..      94     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.24
                -----HHHHHHHHH CS
   PF13410.1 30 GdrpslaDialapf 43
                G+++   Di++++ 
  MMETSP0890-20130614|6329_1  6 GGQFVEEDIVVWGL 19
                78888889999986 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.18
                 -..TT----HHHH CS
   PF13410.1  57 r..eayPnlrawl 67 
                    + y  ++aw+
  MMETSP0890-20130614|6329_1  91 YtgQQYQQVKAWY 103
                 2446788888887 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 1.8e-12
                 TT-THGGG------SS...----.---HHHHHHHHHHHHHHHHH------TT----HHHHH CS
   PF13410.1  11 lraaLdaleahLadgp..fllGd.rpslaDialapflvrldaagpgldireayPnlrawle 68 
                 l + L +le++Ladg   f++G+  p++aD++++++l+ +++a p++d++  +P+l +w++
  MMETSP0890-20130614|6329_1 107 LPESLFQLENQLADGEdlFFCGSkVPTHADFNIFHMLHNVKVAEPHYDWP--HPKLDKWFQ 165
                 4566779**************************************99998..999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|6330_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-13   49.8   2.3    2.7e-12   46.9   0.4    2.3  2  PF13459.1  4Fe-4S single cluster domain
    1.8e-07   31.3   1.6    7.3e-07   29.3   0.2    2.2  2  PF13370.1  4Fe-4S single cluster domain
     0.0072   16.5   0.0       0.44   10.8   0.0    2.4  2  PF12838.2  4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.047   13.4   1.0      0.047   13.4   0.7    2.4  3  PF12837.2  4Fe-4S binding domain
       0.12   11.4   0.2       0.85    8.6   0.1    1.9  1  PF11251.3  Protein of unknown function (DUF3050)
       0.13   11.8  10.4       0.13   11.8   0.7    3.0  3  PF00037.22 4Fe-4S binding domain
        4.1    7.6   7.0         45    4.3   4.9    2.5  1  PF13187.1  4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> PF13459.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   2.2e+02      12      37 ..      43      64 ..      41      91 .. 0.73
   2 !   46.9   0.4   1.4e-15   2.7e-12       1      64 [.     126     182 ..     126     183 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
   PF13459.1 12 gaCvelapdvfeldedgkarvlvddq 37
                g+C e++  v+e d+++++++l   q
  MMETSP0890-20130614|6330_1 43 GLCTEEC--VIEEDDEQFSQILD--Q 64
                7899998..89***999998883..2 PP

  == domain 2    score: 46.9 bits;  conditional E-value: 1.4e-15
   PF13459.1   1 vfvDrdtCigcgaCvelapdvfelded.gkarvlvddqegegevpddleedaqeAadaCPvdaIh 64 
                 v vD+++C gc +C ++a  +f  ++  gkarv+++         +d+ + ++eA++aCP+daI+
  MMETSP0890-20130614|6330_1 126 VIVDENACHGCSQCTSIAAMTFGTESHfGKARVHLQ--------GGDNFAVIKEAIHACPRDAIK 182
                 78************************99******97........47999***************7 PP

>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.31     6e+02      19      37 ..      50      67 ..      41      99 .. 0.68
   2 !   29.3   0.2   3.7e-10   7.3e-07       1      57 [.     128     182 ..     128     183 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.31
   PF13370.1 19 vFeyddeggaavvldqpeg 37
                v e+dde + +++ldq   
  MMETSP0890-20130614|6330_1 50 VIEEDDE-QFSQILDQVYA 67
                6678887.68999997433 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 3.7e-10
   PF13370.1   1 VDrdtCiaCgaCreaAPdvFeyddeggaavvldqpegeeekedaeeAlesCPvesIk 57 
                 VD++ C +C +C ++A  +F  + + g+a+v+ q    +  + ++eA+ +CP ++Ik
  MMETSP0890-20130614|6330_1 128 VDENACHGCSQCTSIAAMTFGTESHFGKARVHLQGG--DNFAVIKEAIHACPRDAIK 182
                 9******************************87665..56899*************8 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00023      0.44       8      46 ..      45     141 ..      41     143 .. 0.55
   2 ?    3.3   0.0     0.051     1e+02      10      23 ..     174     187 ..     171     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00023
   PF12838.2   8 CvaaC........................................................ptgaitldeeeeekgk..kkvevdpekCtgCgaCvt 46 
                 C++ C                                                         ++ +++++++  +++    v vd+  C gC +C +
  MMETSP0890-20130614|6330_1  45 CTEECvieeddeqfsqildqvyaetlvlpntseknedtvylprpadeiamwdqlekigqvaSHELVEMNKKTGLPEQkeSFVIVDENACHGCSQCTS 141
                 6666666666666666666666666666666666666666666444444444443333333334444444332222221335678889*******75 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.051
   PF12838.2  10 aaCptgaitldeee 23 
                  aCp +ai+l + +
  MMETSP0890-20130614|6330_1 174 HACPRDAIKLVDFD 187
                 69******998753 PP

>> PF12837.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       2.6     5e+03      15      19 ..      45      49 ..      43      51 .. 0.58
   2 ?   13.4   0.7   2.4e-05     0.047       2      17 ..     126     141 ..     125     142 .. 0.89
   3 ?    0.1   0.1       0.4   7.7e+02      17      24 .]     174     181 ..     173     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.6
   PF12837.2 15 CvrvC 19
                C++ C
  MMETSP0890-20130614|6330_1 45 CTEEC 49
                65555 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.4e-05
   PF12837.2   2 vtidrdkCigCgdCvr 17 
                 v +d+++C gC  C+ 
  MMETSP0890-20130614|6330_1 126 VIVDENACHGCSQCTS 141
                 889***********85 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.4
   PF12837.2  17 rvCPegAi 24 
                 ++CP +Ai
  MMETSP0890-20130614|6330_1 174 HACPRDAI 181
                 79**9887 PP

>> PF11251.3  Protein of unknown function (DUF3050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00044      0.85      32     153 ..      16     150 ..       3     155 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00044
   PF11251.3  32 msLlkalqqeltcvevPWvpaknpelarlineivlaEEsDeeleg...............eklsHfelYldameevgadtekieeflklveegesveealkkaevpeavkeFlkttfelieegkaheiaaafafGRE 153
                  sL  ++  +  ++ +PW p+k  +   l  e  + EE De+ ++               +++    +Yl    +  a   ++e++ + +++  ++ e+ kk+ +pe+ ++F+ +  + ++  ++ +  aa++fG E
  MMETSP0890-20130614|6330_1  16 YSLSSTINDRFVATPLPWQPPKGWNKEGLCTEECVIEEDDEQFSQildqvyaetlvlpntSEKNEDTVYLPRPADEIAMWDQLEKIGQVASH--ELVEMNKKTGLPEQKESFVIVDENACHGCSQCTSIAAMTFGTE 150
                 688888999999999**************999999999999988755444444444433333333334444444444444444443333322..3566667777777777777777777777777777777777777 PP

>> PF00037.22  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.59   1.2e+03      12      18 ..      43      49 ..      43      49 .. 0.92
   2 ?   11.8   0.7   6.5e-05      0.13       1      15 [.     126     140 ..     126     142 .. 0.89
   3 ?    5.5   0.0    0.0064        13      16      24 .]     174     182 ..     173     182 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.59
                -HHHHH- CS
  PF00037.22 12 GaCvevC 18
                G+C e C
  MMETSP0890-20130614|6330_1 43 GLCTEEC 49
                89***99 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 6.5e-05
                 EEEETTT-----HHH CS
  PF00037.22   1 vvideekCigCGaCv 15 
                 v++de+ C gC +C 
  MMETSP0890-20130614|6330_1 126 VIVDENACHGCSQCT 140
                 689***********7 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0064
                 HH-TTTBEE CS
  PF00037.22  16 evCPvgAIe 24 
                  +CP +AI+
  MMETSP0890-20130614|6330_1 174 HACPRDAIK 182
                 59******6 PP

>> PF13187.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   4.9     0.023        45      35      55 .]     120     181 ..      42     181 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.023
   PF13187.1  35 e........vaekCtgCga.................................CvevCPtgai 55 
                 e         +++C gC +                                  +++CP++ai
  MMETSP0890-20130614|6330_1 120 EqkesfvivDENACHGCSQctsiaamtfgteshfgkarvhlqggdnfavikeAIHACPRDAI 181
                 25666667778889999995555555555555555555555555555555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.83
# Mc/sec: 661.16
//
Query:       MMETSP0890-20130614|6331_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-31  108.0   0.0    6.1e-31  107.4   0.0    1.2  1  PF02816.13 Alpha-kinase family


Domain annotation for each model (and alignments):
>> PF02816.13  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.0   4.5e-35   6.1e-31       4     189 .]     157     374 ..     156     374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 107.4 bits;  conditional E-value: 4.5e-35
                 ---EEEEEEEE-HHHT----EEEEEEE-----.......T--HHHHHHHHHHHHHHHH---HHHHT.....--SS--EE---E.EEEETTS--............--EEEEEEE----...-----B-----B...-S--SHH.....HHHHHHHHHHTTTS-EEE--B--TT.........EEBS-EEE------.-------.----HHHHHH----HHH CS
  PF02816.13   4 GalrkafrvkdldeneesgskyVaKvykkkak.......laeeelyfeevksqliakelakkFnkelqeeenkkkkieflpsllvyelenksk............ekklilvEpflkg...efkKynsnsgkv...etkrrseveelaqaFShFtYeesggqllvvdlqgvgd.........iltDpqihtkdgkg.fgtgnlg.eegiekFleqhkcneic 189
                 Ga+r+  ++  ++   e g+k+VaK y ++ +          +e yf++  + l +  la  Fn+    +e++k +i++ p+  v+e+ ++++             +++++vEpf++g   +f K+nsn+       ++ rs   ++  aFShFt++ ++g+llv+d+qgv           ++tDpqiht +  + +g gn g e++i+ ++ +h c + c
  MMETSP0890-20130614|6331_1 157 GAMRELAAIDGTEIIPEIGQKCVAKAYTRETTewlwenhGSGDEVYFRDAFAYLETSRLAAAFNQARG-KEKNKSRITVTPCR-VIEIIESQNqepiqrtknlfdLRNYLFVEPFIQGsleHFSKFNSNAFNPrllLNE-RSG-HSFSDAFSHFTHHHTHGRLLVCDIQGVCRtslqnfvslTITDPQIHTREPCNdYGVGNGGsEDHIRAWFASHVCRSDC 374
                 788888888888889999***********55445444445667*********************9955.9999999*******.66666666669*********999**********************8444775333.333.6899***********************95567789999**********9554379999873679**********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.79
# Mc/sec: 1346.81
//
Query:       MMETSP0890-20130614|6335_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   12.9   1.8       0.09   12.7   1.3    1.1  1  PF00992.15 Troponin
        7.1    6.5   8.1         11    5.9   5.6    1.5  1  PF05164.8  Cell division protein ZapA


Domain annotation for each model (and alignments):
>> PF00992.15  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   1.3e-05      0.09      15      61 ..      21      68 ..      15      84 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
                HHCHHHHHHCHHHHHHHCCCSXSXX.XXX.XHHHHHHHHHHHHHHHHH CS
  PF00992.15 15 elekeqrkkeeekekaLkerieklk.lsgasraelqeickklheriar 61
                ++ +e  +keeek  +L e   ++  ++ +s a +  ++++lh  +a 
  MMETSP0890-20130614|6335_1 21 NMSQELSQKEEEKAMYLTETEARHAiTEAESAARVLSLTQQLHSTQAD 68
                578999************99999995666889999999*****99975 PP

>> PF05164.8  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.6    0.0016        11      42      78 ..       7      52 ..       1      85 [. 0.72

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0016
   PF05164.8 42 krlseerlavLaaLnladellkakeeaaelee.........leelk 78
                +++  +  a L aLn+ +el +++ee+a + +          +e +
  MMETSP0890-20130614|6335_1  7 RHAAAAADAALLALNMSQELSQKEEEKAMYLTetearhaitEAESA 52
                555566668899************9998887745555555533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       864  (0.0631949); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.64
# Mc/sec: 325.75
//
Query:       MMETSP0890-20130614|6338_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   82.4   0.0    1.2e-23   82.2   0.0    1.1  1  PF01248.21 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family


Domain annotation for each model (and alignments):
>> PF01248.21  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   8.9e-28   1.2e-23       2      94 ..      13     105 ..      12     106 .. 0.97

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 8.9e-28
                 HHHHHHHHHHHHTEEE---HHHHHHHHH-TECEEEEETTTSSGGHHCHHHHHHH..HTTEEEEEESTTTTHHHHHHHTST-SEEEECE-TTCTTH CS
  PF01248.21   2 aleeklkkalktgklvlGlkevtkalergeaklviiAedvepeekkkllealck..ekevpyvkvkskkeLGelvgkkrpvsalaikdegdskdl 94 
                 +l++ l++++k+gk++lG+k ++k+l+  + klv+iA++++p +k++ +e++++  +++v ++ +++  +LG+++gk ++vs l+i+d+gds+++
  MMETSP0890-20130614|6338_1  13 NLNSRLQLVMKSGKVALGYKSSLKTLRASKSKLVLIANNTPPVRKSE-VEYYAMlsKCQVILYNGSN-VDLGTACGKYFRVSMLTIIDPGDSDIV 105
                 68999******************************************.*******************.************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 324.38
//
Query:       MMETSP0890-20130614|6337_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-54  183.5   0.1    9.1e-54  182.5   0.1    1.5  1  PF04100.7 Vps53-like, N-terminal
    3.8e-13   48.2   1.5    2.1e-12   45.8   0.6    2.2  2  PF06046.8 Exocyst complex component Sec6
    4.5e-08   31.3   0.5    7.1e-08   30.7   0.3    1.3  1  PF10191.4 Golgi complex component 7 (COG7)
    7.4e-05   21.3   3.5    0.00077   18.0   2.4    2.4  1  PF04437.8 RINT-1 / TIP-1 family


Domain annotation for each model (and alignments):
>> PF04100.7  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.1   2.7e-57   9.1e-54     108     381 ..       1     306 [.       1     308 [. 0.89

  Alignments for each domain:
  == domain 1    score: 182.5 bits;  conditional E-value: 2.7e-57
   PF04100.7 108 iTtLkrLkmLvsgveslkkliskrsykeavsllqavlqllnhFekykdvekiaeLsesisklkkslksqiledfkeaF.............gsqketeegllleklsdaCrvvdilepsvkeelikwfisreLeeyekifreneelasLdkidrrYawlkrklrdfeekyakiFpadWevaeRltvefckqTrkqlekilkrkkekldvkllllalqsTleFEkllekrFgGgkli...................sqkakkkkekkelas..............nfrgaisscFephltlyiesqekelsellekfvsee 381
                 +T+Lkr++mL+ +v +l+     + y+ea++ll+a+ +l+ +Fe + dv++i+eL+ ++ + +k l+ +++e fk+               g+ +  + +     lsdaC+v+d++    ++  +   i+++Le y ++f  + +  sL+++drr+ w++r+lr f+e + + Fp +W++++Rl+  f ++Tr    +il    e+ +v  +l alq+ l FEk+++ r     +                    +                            ++ g++ss+F+p++++y+  ++k+++e++ k+++ee
  MMETSP0890-20130614|6337_1   1 MTALKRMHMLTAAVSQLRSSSAAKRYGEAANLLEAIGHLISYFEPHGDVPRISELKAEVAATRKRLEDEVFEAFKKIGklvetttagrttdGKSEMSQGSGEFASLSDACLVLDAVGQAARDRQMAALIQNQLEPYAQLFPRGGQYSSLEDVDRRFSWIRRLLRVFQERFHDSFPIHWQMERRLIFGFIEETRTMFLEIL-SSGEEHSVTAILKALQKSLVFEKEVQARLDDLDHRrkksddtttventsinkniT-------------IpnknntihdnkiagTVLGTLSSVFDPFMQPYVALEKKNMQEMMSKVAAEE 306
                 8**************************************************************************987888999998876666666666778899***********************************************************************************************.67888999999******************55544455556666666555544430.............04444444444444499******************************9987 PP

>> PF06046.8  Exocyst complex component Sec6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.42   1.4e+03     478     509 ..     148     179 ..     123     214 .. 0.66
   2 !   45.8   0.6   6.1e-16   2.1e-12     205     478 ..     283     550 ..     275     652 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.42
   PF06046.8 478 daakllsklrvleklldlleledidavvleve 509
                 + + ++ ++ ++ +ll+  + ++ d+++ +++
  MMETSP0890-20130614|6337_1 148 SLEDVDRRFSWIRRLLRVFQERFHDSFPIHWQ 179
                 44455555555555555555555555544443 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 6.1e-16
   PF06046.8 205 LlddYlklivkkvkeWldnllktekkeFseeeppeedddgly.vtplpvdvfqmleeqldvaaeslqakilvgvleelsellrsrqdawielleeelkkyssvnnne.....skeglveyliAlaNdqlkcadyaeklkqkyeekvsskyeeriteefeelldgfvelskeairllleiifnDlkpalsklftkkWytg.......elmeqivetiedYleDyqeylspelfqvlleelldelvleYlrallekklkfkakkkrkqfaeklkrDaeqlyqffeklgd 478
                  ++ Y++l +k+++e + ++  +e            d dg + v ++ v vf  ++  ++  ++  +++++ +  ++++e+l+++++ + + ++e +   ss+++++       +  +   + ++N+ + cad +e+l + ++ k+++ y e+  +e e+  d+f e+  +a+r+l+ +i + l+pa++ + t++W          + +  iv  ++  +   +++ls  +f  +++++  +++ ++ +a+l+      +k+ ++ ++ +l  D   l+ ++ +l++
  MMETSP0890-20130614|6337_1 283 FMQPYVALEKKNMQEMMSKVAAEED----------VDRDGALpVFSSSVHVFAYIKTSVRRCTALTTGQTFFKLYRAFCECLSEYANRLTSAVDEAAV-HSSAKEESrrnfwATQDAISVACYALNTAEYCADTMEQLGDIVKAKIDKDYIEQ--IETETQIDAFREVIGRAVRKLVAVIDAALEPAFKRIATTNWSILdavdeesKYVGDIVFALKSKIPAARNLLSALYFRNVCDKIVASFLPKLYKAILN------TKRINETATHQLLLDLHSLKPLLLDLPN 550
                 67789**************999998..........56777664899***********************************************77665.4555555579999888999999999***********************777776..678899***********************************887334444455555555555555555555555555555555555555555555555......5788999999999999999999999983 PP

>> PF10191.4  Golgi complex component 7 (COG7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.3   2.1e-11   7.1e-08     344     489 ..     264     411 ..     211     446 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2.1e-11
   PF10191.4 344 sdllkllellkavyspfetfkkkYgklEesllsaelaaldlegaevsdtVreleesvakviklleaAveRCiklTqgleldeLvkaLddlllkyvskfqevlkslrlkckvdntaass..sskedWsllQlslqilqvlgellsqlse 489
                 +d +++  +l ++ s f++f + Y  lE+ +++ +++++  e+    d    + +s  +v+ +++  v RC++lT g    +L +a+ + l +y ++++++  + +++   ++ +  +  + ++  s+  ++l+  +++++ ++ql++
  MMETSP0890-20130614|6337_1 264 HDNKIAGTVLGTLSSVFDPFMQPYVALEKKNMQEMMSKVAAEEDVDRDGALPVFSSSVHVFAYIKTSVRRCTALTTGQTFFKLYRAFCECLSEYANRLTSAVDEAAVHSSAKEESRRNfwATQDAISVACYALNTAEYCADTMEQLGD 411
                 5666666778889999****************************999*9999999999*************************************99999887766655544433332012334556666666666666666666555 PP

>> PF04437.8  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.4   2.3e-07   0.00077     177     424 ..     318     545 ..     125     557 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.3e-07
   PF04437.8 177 kiaerfnklletiteryqpLpslsqklrFlrsiqlelldqflerLlsaleeyllmtst.....qesleddaelerlckvlnaaeylekkLedwsddvfFlqervkenkdkgnsladiasrtsssegalFdetiealerlrlrlessivsrlvkelksalrnYsklstWsslseesaaaslslSselvealraLkteisfLersLnvaiflriirqvlesldtyiissilkrnkFsegGaaQlefDmeaLfevf 424
                  ++  +   ++t ++r+ +L + +  ++   +   e+l+++ +rL+sa+ e+   +s+      +  + ++++  +c  ln aey+ +++e++ d v           +k    +d+ ++++       + +i a++++  r ++++v+++   l+ a +     ++Ws l           S+ + +++ aLk++i    ++L++  f+++  ++++s    +++ il +++ +e    Ql  D+ +L+ ++
  MMETSP0890-20130614|6337_1 318 SSSVHVFAYIKTSVRRCTALTTGQTFFKLY-RAFCECLSEYANRLTSAVDEAAVHSSAkeesrRNFWATQDAISVACYALNTAEYCADTMEQLGDIVK----------AKID--KDYIEQIET------ETQIDAFREVIGRAVRKLVAVIDAALEPAFKRIAT-TNWSILDAV-----DEESKYVGDIVFALKSKIPAARNLLSALYFRNVCDKIVASFLPKLYKAILNTKRINETATHQLLLDLHSLKPLL 545
                 556677788888889999988877777655.67789**************9999999876655555567899999********************764..........3333..788888888......88999999999*******************99888.9***99998.....4457778888999*******************************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       687  (0.0502487); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.26s 00:00:01.45 Elapsed: 00:00:01.53
# Mc/sec: 1171.55
//
Query:       MMETSP0890-20130614|6341_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-38  130.3  10.4      1e-23   82.9   2.7    2.1  2  PF14312.1 FG-GAP repeat
     0.0081   15.9   0.8        2.8    7.8   0.0    2.2  2  PF06669.6 Xylella fastidiosa surface protein related
  ------ inclusion threshold ------
       0.45   10.9   5.9        4.1    7.8   1.4    2.1  2  PF07020.6 Orthopoxvirus C10L protein


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   2.7   2.2e-27     1e-23       1      49 []       8      56 ..       8      56 .. 0.98
   2 !   51.7   0.3   1.3e-17   5.7e-14       1      31 [.      64      94 ..      64      94 .. 0.97

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 2.2e-27
   PF14312.1  1 wteqaKLtAsDgaagDyFGssVaisgdtavVGAygdddngtnsGsaYvf 49
                w+++aKLtAsDga+gDyFG+sVaisg++a++GA++d+d g++sGsaY f
  MMETSP0890-20130614|6341_1  8 WSQTAKLTASDGASGDYFGYSVAISGSRAIIGAPYDEDLGSASGSAYTF 56
                **************************************9999*****98 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 1.3e-17
   PF14312.1  1 wteqaKLtAsDgaagDyFGssVaisgdtavV 31
                w++++KLtAsDga gDyFG+sVaisg++a++
  MMETSP0890-20130614|6341_1 64 WSQTSKLTASDGAGGDYFGQSVAISGSRAII 94
                ***************************9987 PP

>> PF06669.6  Xylella fastidiosa surface protein related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1     0.001       4.7       8      39 ..       9      40 ..       5      56 .. 0.85
   2 !    7.8   0.0   0.00061       2.8       8      33 ..      65      90 ..      59      94 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.001
   PF06669.6  8 sqpvtfsGneGavkrslGqavvisGesstaGt 39
                sq   ++  +Ga    +G +v isG  +  G+
  MMETSP0890-20130614|6341_1  9 SQTAKLTASDGASGDYFGYSVAISGSRAIIGA 40
                88899999*****************9888776 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00061
   PF06669.6  8 sqpvtfsGneGavkrslGqavvisGe 33
                sq   ++  +Ga    +Gq+v isG 
  MMETSP0890-20130614|6341_1 65 SQTSKLTASDGAGGDYFGQSVAISGS 90
                7888899999**************96 PP

>> PF07020.6  Orthopoxvirus C10L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0062        28      41      66 ..       8      33 ..       3      41 .. 0.83
   2 ?    7.8   1.4    0.0009       4.1      26      66 ..      48      89 ..      38      92 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0062
   PF07020.6 41 WGgleakkhvgggsggifGgssgvkg 66
                W    +     g sg +fG s +++g
  MMETSP0890-20130614|6341_1  8 WSQTAKLTASDGASGDYFGYSVAISG 33
                77777777889999*******99987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0009
   PF07020.6 26 avkrpkslssGgG..smWGgleakkhvgggsggifGgssgvkg 66
                ++ ++ +++ G      W    +     g +g +fG s +++g
  MMETSP0890-20130614|6341_1 48 SASGS-AYTFGENsdRTWSQTSKLTASDGAGGDYFGQSVAISG 89
                33333.44444433379**99998999999999******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.82
# Mc/sec: 277.63
//
Query:       MMETSP0890-20130614|6339_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.2   2.5        1.2    9.0   0.6    2.3  2  PF09403.5 Adhesion protein FadA
        7.5    6.4  10.1        1.3    8.8   3.9    2.0  2  PF12619.3 Mini-chromosome maintenance protein 2


Domain annotation for each model (and alignments):
>> PF09403.5  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.022   1.5e+02       6     104 ..      56     152 ..      53     155 .. 0.64
   2 ?    9.0   0.6   0.00017       1.2      27      66 ..     211     252 ..     207     266 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.022
   PF09403.5   6 LlavlilsalsyaaeeaaevvselkaleaeYqdLvkkeeaRfeeekeekeaaekevaklkelkaeleeklaklkee..sktrfykdeykkLlkkyeeylkk 104
                 L+a++++ ++++ a  a ++++   ++e e   L+kk  +   + k++ e  + ++a   + + +   ++ +++    +k+ f + + +  l +y + l++
  MMETSP0890-20130614|6339_1  56 LCAFTAIFSVAMVAIPA-SMLT--FGFEIEATRLAKKRREARLKRKARIELDDPAIASTSDSESDDAALIRRAQRRrrRKVAFQRKQSRT-LDNYVDILRR 152
                 66777666666666653.3333..366777788988877777778888888888888877777777777777765411567777766544.4566666655 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00017
   PF09403.5  27 selkaleaeYqdLv..kkeeaRfeeekeekeaaekevaklke 66 
                  el + eaeY++Lv  k e++ ++e k+e  a ++e ++ + 
  MMETSP0890-20130614|6339_1 211 EELDSSEAEYEELVlgKTEADAYDEVKNEIMAKQREKQQANT 252
                 699999******9866899999****9998887777777655 PP

>> PF12619.3  Mini-chromosome maintenance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.9   0.00019       1.3      72     133 ..      89     144 ..      80     187 .. 0.60
   2 ?   -0.7   0.1      0.17   1.1e+03      80      80 ..     236     236 ..     209     280 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00019
   PF12619.3  72 raaeaeLdrRDrllararrrrrllpalfldddddedgdidllvqr.rrrRrrydeaadeddl.d 133
                 ++ ea+L+r+ r +          pa+   +d++  +d++l++   rrrRr++ +++++ ++ d
  MMETSP0890-20130614|6339_1  89 KRREARLKRKARIEL-------DDPAIASTSDSE-SDDAALIRRAqRRRRRKVAFQRKQSRTlD 144
                 333444444444443.......335555444433.33555666655888888888443343334 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.17
   PF12619.3  80 r 80 
                  
  MMETSP0890-20130614|6339_1 236 V 236
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       762  (0.0557343); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:01.08
# Mc/sec: 698.94
//
Query:       MMETSP0890-20130614|6343_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-08   34.4   0.2    3.7e-08   33.2   0.0    1.7  2  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.015   14.6   0.0        1.2    8.4   0.0    2.2  2  PF00009.22 Elongation factor Tu GTP binding domain
      0.027   14.1   0.3       0.44   10.2   0.0    2.4  2  PF00350.18 Dynamin family
      0.057   12.4   0.1       0.28   10.2   0.0    2.0  1  PF03193.11 Protein of unknown function, DUF258
       0.16   10.5   0.0       0.24    9.9   0.0    1.1  1  PF09547.5  Stage IV sporulation protein A (spore_IV_A)


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.3   6.3e+03      74      87 ..      72      86 ..      60     119 .. 0.49
   2 !   33.2   0.0   1.4e-11   3.7e-08       2      61 ..     185     262 ..     184     275 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.3
                HHCTSSE.EEEEEET CS
  PF01926.18 74 kveradv.lllvvda 87
                 v++a + ++l vd+
  MMETSP0890-20130614|6343_1 72 TVKEARGvVILFVDL 86
                345554414444442 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 1.4e-11
                 EEEE--TT---HHHHHHHHC........STCTE..............ETS-TT-SSSESEEEEETTEEEEEE---SSSHHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg........ekaak..............vsdypgtTrditenevkkekiilvDtPGiiegase 61 
                 v  vG  N+GKSt+in+ +g        +   k               s+ pgtT+  ++ + ++++ +l+DtPG+++g+s 
  MMETSP0890-20130614|6343_1 185 VYAVGAANAGKSTFINRAIGawvgspskK---KklkqkktrlihgvtASNAPGTTLGLVRVATDNDQ-VLYDTPGLLTGDSL 262
                 7789**************95444333221...12445566677777799999999999554447778.9*******987554 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00044       1.2     120     182 ..     108     174 ..      97     179 .. 0.72
   2 ?    3.8   0.0     0.011        30       9      63 ..     188     244 ..     184     256 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00044
                 HTT--EEEEEE-TTST.....CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHH CS
  PF00009.22 120 klgvkiivviNKiDrv.....eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleai 182
                 +   +++v+ NK D++     + +l e ++++ ++++    e       v+ +Sa++g g+ +Ll+a 
  MMETSP0890-20130614|6343_1 108 RKYRRVLVAANKFDLLpndvsRIRLVEWIRKAVTNYIPALREHL-GPDDVFLMSAKTGLGVHTLLNAA 174
                 44455999********8876655555555555556644443333.2557****************986 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.011
                 EESTT---HHHHHHHHHHCCCCEHHHHHH...HC-..HHHCCHHHH---BBSSEEEEE CS
  PF00009.22   9 ighvDhGKtTltdallykagaiskrgeea...egerlldklkeerergiTiksaaisl 63 
                 +g  ++GK+T++++ + ++    ++++ +   +++rl+  + + ++ g T  +  +  
  MMETSP0890-20130614|6343_1 188 VGAANAGKSTFINRAIGAWVGSPSKKK-KlkqKKTRLIHGVTASNAPGTTLGLVRVAT 244
                 78899*******998887754333222.223344666777777777777765555544 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00016      0.44       2      21 ..     186     205 ..     185     213 .. 0.86
   2 ?    1.4   0.0     0.078   2.1e+02      97     111 ..     242     256 ..     210     263 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00016
                 EEE--TT---HHHHHHH--- CS
  PF00350.18   2 avvGsqSaGKSSllnaLlge 21 
                   vG+ +aGKS+++n  +g+
  MMETSP0890-20130614|6343_1 186 YAVGAANAGKSTFINRAIGA 205
                 679************87775 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.078
                 ETTS-SEEEEE---- CS
  PF00350.18  97 sllvkgltlvDtPGl 111
                   ++++ +l+DtPGl
  MMETSP0890-20130614|6343_1 242 VATDNDQVLYDTPGL 256
                 56777888******9 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0001      0.28      39     100 ..     186     259 ..     131     277 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0001
                 EEE-------HHHHHHH----..............----S--------------S-BEEE-.---EEES----TS- CS
  PF03193.11  39 vlvGqSGvGKSsLinallpel..............dlkvgevseklgrGkhTTtavellklsegglliDtPGfrel 100
                   vG + +GKS++in+ ++                +  ++ v++++  G  TT     ++ +++ +l DtPG+ + 
  MMETSP0890-20130614|6343_1 186 YAVGAANAGKSTFINRAIGAWvgspskkkklkqkkTRLIHGVTASNAPG--TTLGLVRVATDNDQVLYDTPGLLTG 259
                 3478899999999999988778888888887744333344444444444..6666666777999********8654 PP

>> PF09547.5  Stage IV sporulation protein A (spore_IV_A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   8.7e-05      0.24      11      51 ..     178     217 ..     172     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.7e-05
   PF09547.5  11 aertnGdiyigvvGpvrtGkstfikrfmellv.lPniedeyk 51 
                 a+r +Gd+y   vG+  +Gkstfi+r +   v  P+ +++ k
  MMETSP0890-20130614|6343_1 178 AARLKGDVY--AVGAANAGKSTFINRAIGAWVgSPSKKKKLK 217
                 67999****..59*************9987772354444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.43s 00:00:01.27 Elapsed: 00:00:00.81
# Mc/sec: 1402.31
//
Query:       MMETSP0890-20130614|6344_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-38  129.9   4.3    1.1e-37  129.5   2.9    1.1  1  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.049   13.0   0.0      0.063   12.6   0.0    1.3  1  PF12813.2  XPG domain containing
      0.051   13.3   0.4       0.11   12.2   0.3    1.6  1  PF05307.6  Bundlin
      0.053   12.4   0.0      0.053   12.4   0.0    2.3  3  PF00122.15 E1-E2 ATPase
          5    6.6   8.6          2    7.9   0.6    3.0  3  PF11026.3  Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   2.9   4.2e-41   1.1e-37      33     317 ..       5     304 ..       1     306 [. 0.77

  Alignments for each domain:
  == domain 1    score: 129.5 bits;  conditional E-value: 4.2e-41
  PF02535.17  33 asklvlslllafavGvllgtaflhLlpealealeesdcveefeeshplkgllvllGffllllleelltmikesdahshgegrghdkehsettsdeaskskes............................kvenaeseeeeteeeesdhdheskeksesdkeselaaa.....viaillvlglglHsfidGLAiGvsssedt..gislflAvllHelphelglgaiLlkagasrkkavllnllfaltaplGaliGiavsaadnsgrsdlvsgillalaaGtflYvalvellpeelanekslkqnllqllglllGfalmll 317
                 ask vl l+la ++Gv+l+ +f+ +l +++ a e+    +   + ++ +    ++G++++  ++ l++ + +++++ h+ + ++   ++ +++ +                                   +      + ++ + ++ + +   +   e+   ++l+ +     ++++++++++glH+f++GLA++v+  ++   gi+l++A+++H++p++l++ ++++ a  +r++a+ +++l+++++p+Gal+G++v     + ++++++gi+++  aG+++ + l ellp+ ++ +    +  + + g+++G+a+m++
  MMETSP0890-20130614|6344_1   5 ASKQVLALALAVSAGVMLYVSFVEILVKSQVAFEGPL--GP-SDAYMAATASLFGGMIFMGAVDVLVHRLDPQHDANHSSDPQQFVATQLQDEAA------LasavelgtlgnceggpaaadkstttsndE-----TTFSQISPKSTSSKDMTDIANEKNLLKHLEPRpdelkRMGVMTAIAIGLHNFPEGLATFVATIAEPtvGIALSIAIAIHNIPEGLCVAMPIYFACGDRWRAFRWAILSGISEPIGALLGWIV---LAHAFNQVIYGIIFGAVAGMMVMIVLHELLPTAHKYDP---NDQVVTKGFCAGMAIMAA 304
                 5799*****************************7743..33.35679999999****************98882222222222222222222222......123456799999999988887766443331.....2222222222222222222222233333333333444669**********************99988*******************************************************...999**********************************9...56666778999***9986 PP

>> PF12813.2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.063       8      60 ..      25      74 ..      20     155 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
   PF12813.2  8 vvveaLkerwkfavitevvpgEADkycAilArklgcaVLtsDSDllvhdlgpe 60
                 +ve+L ++   +v++e   g  D+y A++A+ +g++++ +  D+lvh l p+
  MMETSP0890-20130614|6344_1 25 SFVEILVKS---QVAFEGPLGPSDAYMAATASLFGGMIFMGAVDVLVHRLDPQ 74
                799999999...99***********************************9543 PP

>> PF05307.6  Bundlin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3     4e-05      0.11      18      50 ..       5      37 ..       1      64 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4e-05
   PF05307.6 18 esamvlalaatvtagvmfyyqsasdsnkaqnai 50
                 s  vlala +v+agvm+y        k+q a 
  MMETSP0890-20130614|6344_1  5 ASKQVLALALAVSAGVMLYVSFVEILVKSQVAF 37
                5788***************98888888888775 PP

>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.21   5.7e+02     161     225 ..       9      71 ..       2      73 .. 0.61
   2 ?   12.4   0.0   1.9e-05     0.053     122     211 ..     122     222 ..     118     227 .. 0.72
   3 ?   -3.0   0.2      0.99   2.7e+03     189     189 ..     265     265 ..     239     307 .. 0.53

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.21
  PF00122.15 161 vlavailifiislvtdvaeklleallia.lallvvaiPegLplavtltlavgaqrlakkgvlvrkl 225
                 vla+a+++ +  ++     +++e+l+ + +a+     P+  ++a t +l+ g+  +    vlv++l
  MMETSP0890-20130614|6344_1   9 VLALALAVSAGVML---YVSFVEILVKSqVAFEGPLGPSDAYMAATASLFGGMIFMGAVDVLVHRL 71 
                 33344433322222...3456677777767777777777777777777777777777777777776 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.9e-05
  PF00122.15 122 atgketeigkiarlvqeaksae.........tplqkkldrlaklllilvlavailif...iislvtdvaeklleallialallvvaiPegLplavtltlavg 211
                 ++ +et++++i+    ++k+            +l+ + d+l +  ++ ++a+++  f   +  +v ++  + +  +  ++a+++  iPegL +a+++ +a g
  MMETSP0890-20130614|6344_1 122 TSNDETTFSQISPKSTSSKDMTdianeknllKHLEPRPDELKRMGVMTAIAIGLHNFpegLATFV-ATIAEPTVGIALSIAIAIHNIPEGLCVAMPIYFACG 222
                 55667777777776666666334666766667777777777777777777777777777555555.555666666777899****************99875 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.99
  PF00122.15 189 l 189
                 +
  MMETSP0890-20130614|6344_1 265 V 265
                 1 PP

>> PF11026.3  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.1     0.069   1.9e+02      67     108 ..      13      54 ..       4      70 .. 0.46
   2 ?   -1.7   0.0      0.69   1.9e+03      45      73 ..     145     173 ..     130     202 .. 0.68
   3 ?    7.9   0.6   0.00073         2      66     117 ..     260     311 ..     223     312 .] 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.069
   PF11026.3  67 llatlsallivlvilllflsallelelslavailFilallll 108
                 +la+ +++++ ++ + + +++ + +e  l ++  +++a ++l
  MMETSP0890-20130614|6344_1  13 ALAVSAGVMLYVSFVEILVKSQVAFEGPLGPSDAYMAATASL 54 
                 333333333333333333333333333333333333333333 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.69
   PF11026.3  45 lrkekaelknlrrRlrlirraillatlsa 73 
                 +++ek+ lk+l+ R   ++r+ +++++++
  MMETSP0890-20130614|6344_1 145 IANEKNLLKHLEPRPDELKRMGVMTAIAI 173
                 34446677888888888888877777765 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00073
   PF11026.3  66 illatlsallivlvilllflsallelelslavailFilallllilslllflr 117
                 i++++++++++++v   l   a        +v+  F ++++ +++sl+lf++
  MMETSP0890-20130614|6344_1 260 IIFGAVAGMMVMIVLHELLPTAHKYDPNDQVVTKGFCAGMAIMAASLILFVY 311
                 67888888888888888888666666677888899***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.63
# Mc/sec: 1186.77
//
Query:       MMETSP0890-20130614|6345_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-74  251.2   0.0    1.7e-74  250.7   0.0    1.2  1  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.7   0.0   1.3e-78   1.7e-74      42     305 ..       2     282 ..       1     283 [. 0.94

  Alignments for each domain:
  == domain 1    score: 250.7 bits;  conditional E-value: 1.3e-78
                 --HHHHHTTS-HHHHHHHHHHH.....HS----..------------HHHHHH----HHHHHHHH--------B--S-------TT------SS-HHHHH---TTT..........T-----EEEEE-SS------TTTTTT-TTEEEEEEEE........TT..SSST---TT----------EEEEEE----.--HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-TT----B-----HHHHHHHHHHHH----EEEB------TTTTTT---HHHHHH CS
  PF00850.14  42 atkeelllvhspeYleqleelasekeeelallg..lesdtplspgsleaallaagavieavdlvlegevrkafvairppGHHAekdsasGFCllNnvaiaakyllk..........khglkrvlivDfDvHhGnGtqeifysdpsvltlSlHd........yeeefyPgtgaadevgegkgkgynlniplepgt.sdeeylkafekilkpllekfkpelvlvsaGfDalagDplgrlnlteegyaeltrdllelalakgkvvlvleGGYnlealaraalavlagl 305
                 at+ee++  h+++Y+e +e++a++++++l++++   ++d++l+++s+e a+la+g+++ea+ +v++gev++  v++rpp HHA +++a+GFCl+N +a  ak +++           + ++rvlivDfDvHhGnGtq++ ++dp+++++S+H+        +e++fyPgtg+  evg  k++g+++n+p+++ + +d ey++ ++++l p++++fkpel+l+saGfDa+ gDplg+++++++ y +l++ l+ela    +v+lvleGGYnl+ la+a   + ++l
  MMETSP0890-20130614|6345_1   2 ATQEEMECLHTRSYIEAMEKTATMNRRQLDKVErkYDDDIYLNNSSFECARLAMGCMVEACARVAAGEVSHSLVIARPPSHHAYANKAMGFCLMNSIATCAKLAINgelmchdgchAEAVERVLIVDFDVHHGNGTQALTWDDPNIVYFSVHRafesrrrwKERTFYPGTGKSLEVGGPKARGSIINLPWSEPKiGDPEYITCWHRLLLPIARNFKPELILISAGFDAACGDPLGGCDVSPTLYGSLVKPLAELA----PVCLVLEGGYNLQVLAEAFPTCARAL 282
                 6899***********************999999888888*****************************************************************99777776665546799*******************************666556667789*******99***9999**********87766************************************************************....****************9988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.75
# Mc/sec: 1351.55
//
Query:       MMETSP0890-20130614|6347_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-11   42.6   0.0    1.3e-10   41.4   0.0    1.7  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   9.7e-15   1.3e-10       1     251 []      44     425 ..      44     425 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 9.7e-15
                 EEEEECE.......CGTHCHHHHHHHTCG......-S..EEEEECC-TC..............................HHHHHHCHHCTTT-EEEE--------SEEE......................ECTEEEEEEESCGCCEEEEEEC.TTSS-ECGGCEECCTCEEEEEEEEEE.CTEEEEEEECHHHCTSSTTSHHHH.HHHHHHHHHHCCHHHH.............................................................SEEEE---S--BSSGH................................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCC.CHHB--S--EE..........BHHHCCCCEEEEECTHHCHS.....SSS CS
  PF03372.18   1 ltwNvlgwnarsdrakkldqladllqsed......pD..vllLQEvded..............................plsellatglasglglagdgkvggggggda......................lgggglallskypldksirrtf.qldgkagiavprlssknkgdvpvrfr.ggktlalvntHltpgnrlrqrder.allaeidkladdsrgs.............................................................pvilaGDfNsrpdspd................................kgfrenaadflpgdgfddglrallphlllptspgttdtyeka.geparlDyilv..........ssgwpalvvsgalllpdrgg.....SDH 251
                 +t+Nv+g+++ + +      l  +l++        p   v++LQE+ +                                                            +                      + g +++++      + + ++    + +   +++++  +nkg+++ r++  + ++++v +Hl+++    +   r a++a i++   ++r++                                                              v+++GD+N+r+  ++                                +gf e+ + f+p++++  g+ ++        + g+ + + k+ + pa++D+i++           +g+++l++s + +l dr       SDH
  MMETSP0890-20130614|6347_1  44 GTYNVNGKRESGLM------LSHWLKCGWtaeeeaPSiwVIALQEMIDLsatnvlkdavadtlsrsaceewtneiqrafV----------------------------YlqslrqdcfkknglprliakeyMCGLAIMVFTSL--PTGVETLKeIATARIPTGAVGGRLGNKGACATRMKlIDSSVCFVGAHLSAHRTDVE--SRnADYATIAAKKCFRRDRfgtvlssdrvggasecngspgggtlarpqsansalafpplqsvndpyadlgiesfgildhdIVFFFGDLNYRIVKSTpdkevhyliqadlnrlllldqlrlemyahrvlSGFIEPQIQFPPTYKYVAGTVLYEH---QSIPEGERNASGKKiRCPAWCDRIMYrvcprgarpiANGHSDLGESVECVLYDRADdrlrvSDH 425
                 599****8888888......8888877447777776655788****9887777777766664444444433333333221............................02222233333444455567855555555555554..44444444133345555666688899999999999*9*************999999..8889999999999998888899999*******************************************************************9999************************************************999877733...4455666666666666667*******99888888886666666666666666666688888999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.39s 00:00:01.37 Elapsed: 00:00:00.90
# Mc/sec: 1752.00
//
Query:       MMETSP0890-20130614|6353_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   17.6   1.2     0.0035   17.3   0.8    1.1  1  PF02413.12 Caudovirales tail fibre assembly protein
  ------ inclusion threshold ------
       0.64    9.5  13.9        0.8    9.2   9.7    1.1  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
        1.1    7.4  13.3        1.2    7.2   9.2    1.0  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
        1.4    6.8   8.9        1.6    6.6   6.2    1.0  1  PF05505.7  Ebola nucleoprotein
        1.8    9.0  12.3        2.6    8.5   8.5    1.2  1  PF09538.5  Protein of unknown function (FYDLN_acid)
        2.4    6.8   6.9        2.7    6.6   4.8    1.0  1  PF04514.7  Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> PF02413.12  Caudovirales tail fibre assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   1.5e-06    0.0035      52     104 ..       3      53 ..       1      55 [. 0.93

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.5e-06
  PF02413.12  52 lpvwvtdakeelqaqaeekkqqllaqasekiaplqdavdlgmatdeekaqLta 104
                  p w t  +++  ++aee+k++ +++ se i p++++ +   +t  e+++Lt+
  MMETSP0890-20130614|6353_1   3 SPSWMT--EDRDEEKAEEEKESIMSAESEGITPKKRKTQSLDSTANERTALTE 53 
                 578888..89999*************************************997 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   9.7   0.00035       0.8      84     150 ..       9      72 ..       3      75 .. 0.44

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00035
   PF04889.7  84 enakkeeeleaakeaeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDetae 150
                 e++++e+++e++++  + e+e  + k++k+++ ++  ++  +    +es  sddd d+ddd+D++ e
  MMETSP0890-20130614|6353_1   9 EDRDEEKAEEEKESIMSAESEGITPKKRKTQSLDSTANERTA---LTESIASDDDGDNDDDDDDDDE 72 
                 444444444444444444444444455544333333333332...2225555555555555555544 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.2   0.00054       1.2     316     370 ..      11      71 ..       4      76 .] 0.45

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00054
                 XXXXXXXXXXXX...XXXXXXXXXXXXXX...XXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
   PF05793.7 316 qdedeeekeeek...keeegklskkkkka...kklkkkkkekdkkdSddeedsddsDidee 370
                 +de++ e+e+e+   +e+eg   kk+k +    +  ++++ ++   Sdd+ d+dd+D+d++
  MMETSP0890-20130614|6353_1  11 RDEEKAEEEKESimsAESEGITPKKRKTQsldSTANERTALTESIASDDDGDNDDDDDDDD 71 
                 3333333333321113455444444443311134445555555666666666666666554 PP

>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.2   0.00068       1.6     519     580 ..       9      70 ..       2      75 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00068
   PF05505.7 519 snqkqedeeenpekktssrlqeltPvqeedesedqaddddsslp.slesddddasdseqdedl 580
                 +++ +e  ee++e  +s+  + +tP + + +s d++ ++  +l+ s+ sddd + ++++d d 
  MMETSP0890-20130614|6353_1   9 EDRDEEKAEEEKESIMSAESEGITPKKRKTQSLDSTANERTALTeSIASDDD-GDNDDDDDDD 70 
                 4555566677788888999999*****************9999835666666.5444444443 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.5    0.0011       2.6      47     100 ..      13      71 ..       2      75 .. 0.31

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0011
   PF09538.5  47 vaadeeeea....aeekeeeeeeeeddvledddeeedl.dddledeadddvdldeddDd 100
                  ++ eee++    ae++  + +++++++l+ + +e ++  + + +++d d d d+ddDd
  MMETSP0890-20130614|6353_1  13 EEKAEEEKEsimsAESEGITPKKRKTQSLDSTANERTAlTESIASDDDGDNDDDDDDDD 71 
                 11111211133332222222233333333333333332322222222222233333332 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.8    0.0012       2.7     201     269 ..       4      71 ..       1      75 [. 0.52

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0012
   PF04514.7 201 kemtpetskqekeeerreavekrleerveklkldleekredlkkeqeeeekvetesddedeegedseee 269
                 +++++e + +ek ee +e+++    e     k +++  ++  ++++  +e++  + d  d++++d +++
  MMETSP0890-20130614|6353_1   4 PSWMTEDRDEEKAEEEKESIMSAESEGITPKKRKTQSLDSTANERTALTESIASDDDG-DNDDDDDDDD 71 
                 6788888888888888888777666665543334444444444444444444443333.3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       902  (0.0659743); expected 273.4 (0.02)
Passed bias filter:                      622  (0.0454944); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:01.03
# Mc/sec: 176.82
//
Query:       MMETSP0890-20130614|6356_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-60  201.7   0.0    1.2e-59  201.3   0.0    1.1  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0     9e-64   1.2e-59       1     268 [.      86     423 ..      86     434 .. 0.93

  Alignments for each domain:
  == domain 1    score: 201.3 bits;  conditional E-value: 9e-64
  PF00248.16   1 elglGtwslgnd...eisedealellraal.eaGinlfDtAeyY........gkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslp.......................sieevlealeelkkeGkirhiGvSnfs.veilekakkkkkvk...ivvvqveynll.neleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd...................................aqdaleelselakehgv.slaqlalryalsrpavgsvipgassieqleenlkalel 268
                 elglGt ++ ++   + +e+ + +l+++a+ e+Ginl+DtAe Y         +g+ e+++g++l+k  +kr++++i+tK+    +   ++++ ni++ +e+sLkrl+tdy+D++l+h+p +++p                       +  ev+ea  el+++Gkir++G  n + v+ +  +  +k++    + v q+ y+l+ +++ee+g+ e+   ++vg++ay +l+gG+ltgky  +++ +   p ++                                   a+ a++++ +la+++++ s+ +lalr+  sr+av+++++g +sieql+ +++a+++
  MMETSP0890-20130614|6356_1  86 ELGLGTQRWVSEdfnAPDEALCHALMDKAIkEYGINLIDTAEQYpipssrehPEGETERVIGKWLSK--NKRDSIVISTKI----TGGLNINKRNIIRDCENSLKRLQTDYIDIYLCHWPARYSPqsnwgqsleyvweygrrnqrvasDFVEVVEAFGELIQAGKIRGYGSCNDNaVGLMGMVSAAKELGinlPCVMQNDYSLInRRIEENGMSEASCLYDVGFMAYNVLAGGMLTGKYGLSSENDALPPPSVddpdqkraqitaskprgrmdsrgwgltlqryrtpaARRAAQQYFALAEQYKLsSPTELALRFPASRDAVTTSLIGHTSIEQLDSSVQAFRT 423
                 69*******9999766677777788*************************99***************..************....****************************************************************************************999999998855555555579*********************99999*******************9887766555555599**************************************************************************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:01.10
# Mc/sec: 1021.72
//
Query:       MMETSP0890-20130614|6355_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-29  101.1  16.4    6.8e-29  100.7  11.3    1.1  1  PF01040.13 UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7  11.3     5e-33   6.8e-29       7     253 ..       8     257 ..       2     268 .. 0.76

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 5e-33
  PF01040.13   7 pvlaglalaaggrldllllllllllllllqaavnvlNdyfDyeiDrdnkrkpeRPlpsGrisprealllglallllglllalllgplllllallglll.g.llYspplrlkrrgllgelvvglafgllillgaaavggdi.....plpllllalllfllalallltndirDvegD.raaGirt......lpvrlgrkatly.alllaaallatallllllaplllllavalaalallrallllrrrdpesgaksflflallf 253
                 ++ ++ +l+agg++d+  ++l+  +++l+ a++n+lN+++ +++D++++r+++RPlpsG+ s++ al l+l  ++ g+++++l+g ++++ +++g ++ +  +Y+   +lk r  ++++v++l++g+++l+g+aa+g  +     +l++ ll l++f +++al++      +++D  + ++++       ++r  r  + y + ++a++ +a  ++l+ ++  + l   al al l +a ++ r r++  ++++f +++ll+
  MMETSP0890-20130614|6355_1   8 AATGAPLLSAGGVIDT-SAILATGGVFLCSASANALNQVYECDRDAVMERTKRRPLPSGKCSKNMALGLALTSGVCGIGALALTGSGTAAQLGAGNIAlYaGIYT---PLKQRSEFNTWVGALVGGIPPLIGWAAAGESLyasdpWLLATLLYLWQFPHFFALAWR-----YKADyTRGNYKMvavndpTGLRTARLVSNYaIYATALPPIA--IALGAQGSMFALEGFALNALLLHAANHFHRDRSKANATRIF-RVTLLY 257
                 4444445666777777.8999999999***********************************999999*********9999888877777666654443679***...9**************************5555555555*********************.....***********966665555555444444477777777777..55556666666666666666666666666655555555555.333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:01.20
# Mc/sec: 734.88
//
Query:       MMETSP0890-20130614|6358_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   12.7   0.6       0.16   11.6   0.1    1.8  2  PF06648.6 Protein of unknown function (DUF1160)


Domain annotation for each model (and alignments):
>> PF06648.6  Protein of unknown function (DUF1160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.2e-05      0.16      67     113 ..     126     175 ..     119     186 .. 0.86
   2 ?   -3.0   0.0      0.39   5.3e+03      87     101 ..     201     215 ..     195     219 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.2e-05
   PF06648.6  67 kLtkkQi...dylvkqvyenekiisilqkfvdeqrLtddeisdlaeFlvt 113
                 kL+++ i   dyl++++  +++i ++l  f+d+ +L+ ++ +++++ lv+
  MMETSP0890-20130614|6358_1 126 KLSQRGIhhpDYLLRKLRIDNYIRELLIPFTDDIQLNPEQFKAVSDLLVE 175
                 66666554449*************************************96 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.39
   PF06648.6  87 isilqkfvdeqrLtd 101
                 i+i+++ +++q++ +
  MMETSP0890-20130614|6358_1 201 IQIMETIIQNQTIAS 215
                 667777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.96
# Mc/sec: 576.62
//
Query:       MMETSP0890-20130614|6361_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.75
# Mc/sec: 1837.21
//
Query:       MMETSP0890-20130614|6362_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.1   9.9       0.36   10.6   0.2    5.7  6  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.059   13.5   0.2         24    5.2   0.0    3.6  4  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   5.2e-05      0.36      11      39 .]      25      53 ..      20      53 .. 0.94
   2 ?    2.8   0.2     0.015     1e+02      23      39 .]      77      93 ..      66      93 .. 0.79
   3 !    4.6   0.0    0.0043        29       6      35 ..     103     130 ..      98     132 .. 0.83
   4 ?   -3.4   0.0       1.4   9.6e+03      20      39 .]     158     177 ..     151     177 .. 0.67
   5 !    7.8   0.0   0.00041       2.8      21      37 ..     203     217 ..     190     219 .. 0.83
   6 !    3.7   0.0    0.0083        57      12      37 ..     236     261 ..     230     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
                SSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 11 tspVtcvafspdgpllasgSrDgtirlWd 39
                +++++ v+++     ++ g + g ir+Wd
  MMETSP0890-20130614|6362_1 25 SGSCRVVDWAGWTENIVAGYESGQIRIWD 53
                5899************************9 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.015
                STEEEEEETTSEEEEEE CS
  PF00400.27 23 gpllasgSrDgtirlWd 39
                 +++a g + g+i +Wd
  MMETSP0890-20130614|6362_1 77 ENVFAIGDDQGCISVWD 93
                689*************9 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0043
                 EEESSSSSEEEEEEESSSTEEEEEETTSEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgti 35 
                 +l+ H++ V+++  + +  ll+ +++Dg +
  MMETSP0890-20130614|6362_1 103 SLQVHEDYVSDLTKASN--LLLASGADGRL 130
                 68889999999999999..99999998976 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 1.4
                 ESSSTEEEEEETTSEEEEEE CS
  PF00400.27  20 spdgpllasgSrDgtirlWd 39 
                    g+ +++g   g + +W+
  MMETSP0890-20130614|6362_1 158 MKQGKKVVCGTQTGALVIWS 177
                 45577788887777777775 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.00041
                 SSSTEEEEEETTSEEEE CS
  PF00400.27  21 pdgpllasgSrDgtirl 37 
                  d   l++gS+Dg irl
  MMETSP0890-20130614|6362_1 203 ED--TLCTGSSDGIIRL 217
                 44..89**********8 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.0083
                 SSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgSrDgtirl 37 
                 +p++ +a + d++++as S+D  +r 
  MMETSP0890-20130614|6362_1 236 FPIERLAHNADSSVIASISHDTIVRF 261
                 57888899999***********9997 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0035        24       5      39 ..      61      95 ..      57      96 .. 0.93
   2 ?    0.6   0.0     0.099   6.7e+02       8      38 ..     105     135 ..     103     136 .. 0.73
   3 ?   -2.5   0.0      0.93   6.4e+03      21      34 ..     161     174 ..     161     175 .. 0.82
   4 ?    2.5   0.0     0.025   1.7e+02       3      31 ..     174     213 ..     171     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0035
   PF13570.1  5 WsydtpgpvnsspavdgglvyvgtgdGrlyAlDae 39
                W+ +++g v +s+ + +++  +g+  G++ + D +
  MMETSP0890-20130614|6362_1 61 WKNKVGGSVCCSLGLQENVFAIGDDQGCISVWDVR 95
                ****************************9999987 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.099
   PF13570.1   8 dtpgpvnsspavdgglvyvgtgdGrlyAlDa 38 
                 +++++++s ++ + +l+ +++ dGrl  l++
  MMETSP0890-20130614|6362_1 105 QVHEDYVSDLTKASNLLLASGADGRLSILEP 135
                 5666666666667788999999***988776 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.93
   PF13570.1  21 gglvyvgtgdGrly 34 
                 g++v+ gt  G l+
  MMETSP0890-20130614|6362_1 161 GKKVVCGTQTGALV 174
                 67999999988875 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.025
   PF13570.1   3 vlWsy....dtpgpvnssp.......avdgglvyvgtgdG 31 
                 v+Ws+    d ++++++ p        +d++++  g++dG
  MMETSP0890-20130614|6362_1 174 VIWSWdrwgDSSDRAIGHPesvdtmlKIDEDTLCTGSSDG 213
                 6899955555556888888977777778899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1182.62
//
Query:       MMETSP0890-20130614|6365_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.074   11.9   5.5      0.086   11.7   0.4    2.2  2  PF08440.5  Potyviridae polyprotein
       0.78    9.4   7.2        2.4    7.8   0.1    2.7  2  PF07889.7  Protein of unknown function (DUF1664)
        1.4    8.8  11.8        1.6    8.6   0.2    2.9  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        1.5    8.0  29.0        0.4    9.8   3.1    3.2  3  PF04012.7  PspA/IM30 family


Domain annotation for each model (and alignments):
>> PF08440.5  Potyviridae polyprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.016        55     202     237 ..      26      60 ..       9      83 .. 0.77
   2 ?   11.7   0.4   2.5e-05     0.086     117     230 ..     112     224 ..     108     255 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.016
   PF08440.5 202 sryakdhteeNievLqaakaqLeefsnlssdkenee 237
                  ++ +dh++   ++L++ ++qL+ f   ++dk++ +
  MMETSP0890-20130614|6365_1  26 RDKLRDHCTATERRLEQIQNQLNSFLL-DKDKDTAQ 60 
                 4678999999999*********99987.44444433 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 2.5e-05
   PF08440.5 117 klyeklweavekyksdagfgrlssasaskiaytLstdptsiqrtiaiidelleeekqkkehfksvtssstssssfsllsiantirsryakdhteeNievLqaakaqLeefsnls 230
                 +l+e+l   ++++ s+    r+++a+a+++a  L  +   + + ++  ++ l+ +++ ++h++sv+++ +   sf  ++  n+  + +a + ++++  + ++ ++qLe  ++++
  MMETSP0890-20130614|6365_1 112 SLVEQLELQFKHSESKYREARRQAADAHSVATALAEERRLLSNDLEAAEARLKAQMNLESHLRSVVNELR-RGSFDQNHHHNSSTIFSAPSPLNNKPPITTTEHNQLETLRAVE 224
                 57788888899999999999**********************************************9998.4445444444444444444444444444444444444444333 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.1     0.011        37      43      93 ..      17      67 ..       8      78 .. 0.75
   2 ?    7.8   0.1   0.00071       2.4      54      98 ..     140     184 ..     132     216 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.011
   PF07889.7 43 dAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevte 93
                +A++++ +  +k+ ++ +++ ++L q  ++l++ l ++ + + ++k+++ +
  MMETSP0890-20130614|6365_1 17 EAIKKIRNARDKLRDHCTATERRLEQIQNQLNSFLLDKDKDTAQMKNQLLQ 67
                789999999999999999999999998889998765444444455555554 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00071
   PF07889.7  54 kvseavasakkhLsqridnlddkldeqkeiskeikeevteiredl 98 
                 +v +a+a+ ++ Ls+ ++  + +l++q ++  + ++ v+e+r+  
  MMETSP0890-20130614|6365_1 140 SVATALAEERRLLSNDLEAAEARLKAQMNLESHLRSVVNELRRGS 184
                 68899***********************************99864 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00046       1.6      62     102 ..      12      52 ..       2      54 .. 0.86
   2 ?    3.6   3.3     0.016        56      16     106 ..      86     178 ..      80     180 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00046
                 TTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  PF02403.17  62 akkkkedaeeliaevkelkeelkaleaelkeleaeleklll 102
                 a+++ e ++++++  ++l +   a e +l++++++l+++ll
  MMETSP0890-20130614|6365_1  12 ASDQREAIKKIRNARDKLRDHCTATERRLEQIQNQLNSFLL 52 
                 566779999999*************************9997 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.016
                 HHHHH-..TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT......HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-- CS
  PF02403.17  16 eklkkRg.edkedvdelleldeerrelqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaeleklllsiPN 106
                 ++l++R+ + + d +e  + + +r++ +ve  elq ++     +  +a ++       a++l +e + l+++l+a+ea+lk+ + +le+ l+s+ N
  MMETSP0890-20130614|6365_1  86 ARLNTRRaHLATDAAETAKHEVARQASLVEQLELQFKHS--ESKYREARRQAadahSVATALAEERRLLSNDLEAAEARLKA-QMNLESHLRSVVN 178
                 566666534444444444444445555554444444443..3333444433333559999********************98.6677777777766 PP

>> PF04012.7  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   0.00012       0.4      90     150 ..       2      62 ..       1      79 [. 0.83
   2 ?    6.9   5.1   0.00095       3.3      91     134 ..      91     134 ..      69     138 .. 0.83
   3 ?    2.0   2.1     0.029     1e+02      84     124 ..     140     180 ..     135     183 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
   PF04012.7  90 laeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqea 150
                 +  i +l+  a + ++  ++ r a+++lr   +a+e+++e+++++ +  ++ +    aq++
  MMETSP0890-20130614|6365_1   2 ANHITELATLASDQREAIKKIRNARDKLRDHCTATERRLEQIQNQLNSFLLDKDKDTAQMK 62 
                 56778899999************************************98876654444433 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00095
   PF04012.7  91 aeikslekqaealetqlaqqrsaveqlrkqlealetkieelkak 134
                 +++  +++ ae  + ++a+q+s veql+ q +  e k++e++++
  MMETSP0890-20130614|6365_1  91 RRAHLATDAAETAKHEVARQASLVEQLELQFKHSESKYREARRQ 134
                 467778999999*****************************998 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.029
   PF04012.7  84 eLArealaeikslekqaealetqlaqqrsaveqlrkqleal 124
                 + A ++++e+  l +++ea e+ l+ q   +  lr  +++l
  MMETSP0890-20130614|6365_1 140 SVATALAEERRLLSNDLEAAEARLKAQMNLESHLRSVVNEL 180
                 679999*****************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1429  (0.10452); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:01.54
# Mc/sec: 459.04
//
Query:       MMETSP0890-20130614|6370_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-18   66.3   0.5    1.9e-18   65.6   0.1    1.5  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.1e-14   54.0   0.1    1.9e-14   53.2   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    4.9e-12   45.3   0.0    9.6e-12   44.4   0.0    1.5  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00064   19.3   0.0     0.0013   18.2   0.0    1.6  1  PF11608.3  Limkain b1
  ------ inclusion threshold ------
      0.021   14.5   0.1      0.035   13.8   0.0    1.4  1  PF08777.6  RNA binding motif


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4   3.9e+03      20      28 ..      54      62 ..      54      63 .. 0.82
   2 !   65.6   0.1   7.1e-22   1.9e-18       1      69 [.      67     136 ..      67     137 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.4
                CTCTCEEEE CS
  PF00076.17 20 skfGpiesi 28
                s +Gp++s+
  MMETSP0890-20130614|6370_1 54 SSYGPVKSV 62
                579***998 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 7.1e-22
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 lfV+n+++++ e+++ + F++fG++++i +  d +tg  kg+a +eF+++ +ae+A+ +lngk + g+ +
  MMETSP0890-20130614|6370_1  67 LFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDrRTGFVKGYALIEFAEQAQAEAAITELNGKDMFGQSI 136
                 8*************************************************************99888765 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   7.1e-18   1.9e-14       1      68 [.      67     136 ..      67     137 .. 0.97

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 7.1e-18
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                 l+v++++++++e+d+++ f+++g v+++++ ++++ g  +g+A++ef+ +++A++a++ ln + ++g+ i
  MMETSP0890-20130614|6370_1  67 LFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRtGFVKGYALIEFAEQAQAEAAITELNgKDMFGQSI 136
                 79********************************99************************99****9987 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.7   7.4e+03       7      14 ..      55      62 ..      54      63 .. 0.79
   2 !   44.4   0.0   3.5e-15   9.6e-12       2      56 .]      82     141 ..      81     141 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.7
   PF13893.1  7 kfGkveri 14
                 +G+v+++
  MMETSP0890-20130614|6370_1 55 SYGPVKSV 62
                69**9986 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 3.5e-15
   PF13893.1   2 yklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                 ++ f  fG+v++i+++ +      +g+A++ef+  ++A+ a++ lng++++g+++ v+++
  MMETSP0890-20130614|6370_1  82 LDTFGEFGQVKNIHVNLDRrtgfvKGYALIEFAEQAQAEAAITELNGKDMFGQSILVDWA 141
                 67899**********98888**999**********************************8 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.9e-07    0.0013      38      85 ..     105     152 ..      91     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.9e-07
   PF11608.3  38 sgksavlrfanqeaaeRalkRleneDvfGnritvsespkerefndeee 85 
                  ++ a + fa+q  ae a   l++ D+fG+ i+v     +++ +++ +
  MMETSP0890-20130614|6370_1 105 VKGYALIEFAEQAQAEAAITELNGKDMFGQSILVDWAFCKENSTSQYS 152
                 567899****************************98755555444444 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05     0.035       1      58 [.      64     127 ..      64     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
                 --EEEEE---SS--HHHHHHHT-----EEEE----------EE......ESS-..HHHH---TT CS
   PF08777.6   1 GvivklsGlnkelsredikelfsklgevkyvdfkegdkegevr......Fkedeaakkalekat 58 
                 G i+ +s +++e + +di ++f ++g+vk + ++ +  +g v+      F+e+++a++a+ +++
  MMETSP0890-20130614|6370_1  64 GWILFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRTGFVKgyalieFAEQAQAEAAITELN 127
                 7899999999***********************9999998765433333777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 459.06
//
Query:       MMETSP0890-20130614|6371_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-09   36.6   8.8     0.0001   21.9   0.1    5.6  6  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.082   12.4   0.0         10    5.6   0.0    3.0  3  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0029        20      25      39 .]      88     102 ..      75     102 .. 0.89
   2 !   21.9   0.1   1.5e-08    0.0001       6      39 .]     113     152 ..     110     152 .. 0.93
   3 ?    2.7   0.1     0.017   1.2e+02      11      39 .]     170     201 ..     167     201 .. 0.76
   4 ?    2.0   0.0     0.028   1.9e+02      12      26 ..     215     233 ..     210     245 .. 0.73
   5 ?   -3.8   0.0       1.8   1.3e+04       8      15 ..     261     268 ..     257     275 .. 0.81
   6 !    5.2   0.0    0.0027        18      11      38 ..     326     354 ..     324     354 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0029
                 EEEEEETTSEEEEEE CS
  PF00400.27  25 llasgSrDgtirlWd 39 
                  +a+g +Dg + +Wd
  MMETSP0890-20130614|6371_1  88 SIATGDYDGGLAIWD 102
                 69************9 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 1.5e-08
                 EEESSSSSEEEEEEESS......STEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspd......gpllasgSrDgtirlWd 39 
                 + ++H+s ++ ++ +         p l++gSrDg++r+Wd
  MMETSP0890-20130614|6371_1 113 ISKAHKSIINGIDGAGGlgvgggAPELVTGSRDGCVRVWD 152
                 67899999999999999**********************9 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.017
                 SSSEEEEEEESS...STEEEEEETTSEEEEEE CS
  PF00400.27  11 tspVtcvafspd...gpllasgSrDgtirlWd 39 
                 t  ++ vaf  +    ++++ g ++g i+l+d
  MMETSP0890-20130614|6371_1 170 TRDCWTVAFGNSfgdERCVCAGYDNGDIKLFD 201
                 56788888888888667777777888888887 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.028
                 SSEEEEEEESS....STEE CS
  PF00400.27  12 spVtcvafspd....gpll 26 
                 ++Vtcv f+ +     +l+
  MMETSP0890-20130614|6371_1 215 NGVTCVQFDRPdiemNKLV 233
                 79******98877744444 PP

  == domain 5    score: -3.8 bits;  conditional E-value: 1.8
                 ESSSSSEE CS
  PF00400.27   8 rgHtspVt 15 
                 ++H+++V+
  MMETSP0890-20130614|6371_1 261 KAHKATVW 268
                 78999997 PP

  == domain 6    score: 5.2 bits;  conditional E-value: 0.0027
                 SSSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27  11 tspVtcvafspd.gpllasgSrDgtirlW 38 
                 t p+ + ++spd   l + ++ D t+r++
  MMETSP0890-20130614|6371_1 326 TQPIVAFDWSPDrEGLAVLACLDQTLRVY 354
                 6789999*****99999999999999996 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.14   9.9e+02     103     103 ..      71      71 ..      17     119 .. 0.48
   2 ?    5.6   0.0    0.0015        10      71     106 ..     183     217 ..     171     225 .. 0.79
   3 ?    2.7   0.0     0.011        77      58      78 ..     325     345 ..     315     356 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.14
   PF08662.6 103 r 103
                 +
  MMETSP0890-20130614|6371_1  71 A 71 
                 2 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0015
   PF08662.6  71 skefaviyGkmpakislfdlkvnvisklkekkrNti 106
                 ++e +v+ G+ + +i+lfdl+ n + + +++++N +
  MMETSP0890-20130614|6371_1 183 GDERCVCAGYDNGDIKLFDLRTNTM-RWETNANNGV 217
                 6788****************98864.5566666655 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.011
   PF08662.6  58 kegpihdvaWspkskefaviy 78 
                  + pi ++ Wsp+++ +av+ 
  MMETSP0890-20130614|6371_1 325 STQPIVAFDWSPDREGLAVLA 345
                 4569**********9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.81
# Mc/sec: 1070.96
//
Query:       MMETSP0890-20130614|6373_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-57  193.2   0.1    3.3e-57  192.7   0.1    1.2  1  PF00227.21 Proteasome subunit
    1.6e-13   49.5   0.2    3.2e-13   48.6   0.2    1.5  1  PF10584.4  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
      0.063   12.1   0.2       0.11   11.3   0.1    1.3  1  PF04123.8  Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.1   7.3e-61   3.3e-57       1     190 []      26     210 ..      26     210 .. 0.98

  Alignments for each domain:
  == domain 1    score: 192.7 bits;  conditional E-value: 7.3e-61
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE.-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiG.sgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                 vkkG ++vG+kg+ ++vl+++++a   +kl++ +t++K+ k+dd+i +afaGl+aDar+lv+rar+eaq+yrl+ ++ +sve+++++la+llq+ytqr+g+rpfgvs+++ag+  +++p  yqidpsG+++++k a aiG  ++++++++lek++k  l+ +ea +l +k l e+++   + +kn+e++vi
  MMETSP0890-20130614|6373_1  26 VKKGAATVGLKGESCIVLGVERKAV--AKLQEARTIRKVVKLDDKITLAFAGLTADARVLVQRARVEAQSYRLTCEDSPSVEYMARYLAQLLQRYTQRGGVRPFGVSAILAGFSSDNKPLMYQIDPSGTYFSWK-ANAIGgRNAKSMREFLEKSWKATLSDDEATTLCIKTLLEVVD---SGSKNMEIVVI 210
                 79***********************..**********************************************************************************************************8.******************************************...88899998886 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2     7e-17   3.2e-13       1      23 []       3      25 ..       3      25 .. 0.99

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 7e-17
                T---TT--------HHHHHHHHH CS
   PF10584.4  1 YDrslTtFSPdGRLfQVEYAlkA 23
                YDr+lT+FSPdG+LfQ++YA++A
  MMETSP0890-20130614|6373_1  3 YDRALTVFSPDGKLFQIDYAYEA 25
                **********************9 PP

>> PF04123.8  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.4e-05      0.11      54     100 ..     191     239 ..     181     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.4e-05
   PF04123.8  54 vkiydeLkaege.dvevavvsGskdvgveadrkia.eqldevlseldad 100
                 +k+  e  ++g+ ++e++v+s ++++gv+++ +++ e+ld ++++++a+
  MMETSP0890-20130614|6373_1 191 IKTLLEVVDSGSkNMEIVVISRDPNSGVQSETTLSdEKLDAIIATIEAE 239
                 7777888888777*********************8468*****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.73
# Mc/sec: 840.37
//
Query:       MMETSP0890-20130614|6378_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1125  (0.082285); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|6374_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-15   55.7   1.3    7.5e-10   38.2   0.1    2.2  2  PF13374.1  Tetratricopeptide repeat
    1.6e-13   50.2   0.1    2.2e-13   49.7   0.1    1.4  1  PF13424.1  Tetratricopeptide repeat
    1.3e-07   31.0   7.3    9.8e-05   21.8   2.0    2.0  2  PF13414.1  TPR repeat
    2.8e-06   26.6   3.0     0.0017   17.9   0.3    2.2  2  PF07719.12 Tetratricopeptide repeat
    4.9e-06   25.8   4.9     0.0015   17.8   0.3    2.2  2  PF00515.23 Tetratricopeptide repeat
    2.8e-05   23.4   0.2     0.0042   16.6   0.0    2.2  2  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.8   1.9      0.053   14.0   0.2    2.0  2  PF13432.1  Tetratricopeptide repeat
      0.017   15.5   1.6       0.18   12.4   0.2    2.1  2  PF13428.1  Tetratricopeptide repeat
      0.042   13.8   0.0      0.052   13.5   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.059   12.9   0.5      0.093   12.2   0.4    1.3  1  PF10938.3  YfdX protein
       0.09   12.9   0.5        1.1    9.5   0.3    2.4  1  PF13431.1  Tetratricopeptide repeat
       0.15   11.8   3.6        8.9    6.2   0.1    2.5  3  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1     4e-06    0.0046      18      42 .]       3      27 ..       2      27 .. 0.95
   2 !   38.2   0.1   6.6e-13   7.5e-10       1      42 []      28      69 ..      28      69 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
   PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
                ++eA  l+e+a +i ++ +G +HP+
  MMETSP0890-20130614|6374_1  3 HDEAKLLYERAIDIDEKTYGLNHPE 27
                89**********************6 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 6.6e-13
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +l ++++y eA++l+++alai  + l++ HP+
  MMETSP0890-20130614|6374_1 28 VATDLNNLAGLLKEQKKYKEARPLLQRALAILVAKLPPQHPH 69
                57779************************************6 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1     2e-16   2.2e-13      20      75 ..       2      58 ..       1      75 [. 0.97

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2e-16
   PF13424.1 20 dydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
                ++deA  lye+a+++  +++g +hp++a+ lnnla l+ ++++y+eA+++l++Al+i
  MMETSP0890-20130614|6374_1  2 KHDEAKLLYERAIDIdEKTYGLNHPEVATDLNNLAGLLKEQKKYKEARPLLQRALAI 58
                59*****************************************************99 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.0   8.6e-08   9.8e-05      18      67 ..       2      58 ..       1      59 [. 0.88
   2 !   17.3   0.1   2.1e-06    0.0024       2      37 ..      28      68 ..      27      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.6e-08
   PF13414.1 18 dydeAieayekAleld........pnnaelyynlAlaylklgkdyeeAledyekAlel 67
                ++deA  +ye+A+++d        p+ a  ++nlA ++ ++  +y+eA+  +++Al++
  MMETSP0890-20130614|6374_1  2 KHDEAKLLYERAIDIDektyglnhPEVATDLNNLAGLLKEQK-KYKEARPLLQRALAI 58
                79*************9777776666667799*********86.8************86 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.1e-06
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnna 37
                +A  l++l+  l ++++y+eA  ++++Al++      p+++
  MMETSP0890-20130614|6374_1 28 VATDLNNLAGLLKEQKKYKEARPLLQRALAILvaklpPQHP 68
                68889************************985444447776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00081      0.92      16      32 ..       2      18 ..       1      20 [. 0.90
   2 !   17.9   0.3   1.5e-06    0.0017       4      30 ..      32      58 ..      29      59 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00081
                -HHHHHHHHHHHHHH-T CS
  PF07719.12 16 dyeeAleafekAleldP 32
                +++eA+ ++e+A+ +d 
  MMETSP0890-20130614|6374_1  2 KHDEAKLLYERAIDIDE 18
                579***********997 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                l+nl+ ++ ++++y+eA+ ++++Al++
  MMETSP0890-20130614|6374_1 32 LNNLAGLLKEQKKYKEARPLLQRALAI 58
                89***********************86 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.3   0.00039      0.44      16      32 ..       2      18 ..       1      19 [. 0.92
   2 !   17.8   0.3   1.3e-06    0.0015       4      30 ..      32      58 ..      29      59 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00039
                -HHHHHHHHHHHHHHHT CS
  PF00515.23 16 kydeAleyyekALelnP 32
                k+deA   ye+A+ +++
  MMETSP0890-20130614|6374_1  2 KHDEAKLLYERAIDIDE 18
                79*************97 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.3e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                l+nl+ ++ +++ky+eA    ++AL +
  MMETSP0890-20130614|6374_1 32 LNNLAGLLKEQKKYKEARPLLQRALAI 58
                79***********************87 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.023        26      15      32 ..       3      18 ..       2      24 .. 0.74
   2 !   16.6   0.0   3.7e-06    0.0042       2      29 ..      32      59 ..      32      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.023
   PF13176.1 15 yekAielyeraLaltkdp 32
                +++A  lyer  a++ d+
  MMETSP0890-20130614|6374_1  3 HDEAKLLYER--AIDIDE 18
                7999999***..555544 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.7e-06
   PF13176.1  2 llnLarlysrlgdyekAielyeraLalt 29
                l+nLa l  ++ +y++A  l++raLa+ 
  MMETSP0890-20130614|6374_1 32 LNNLAGLLKEQKKYKEARPLLQRALAIL 59
                89*********************98775 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.57   6.5e+02      47      61 ..       3      17 ..       2      21 .. 0.73
   2 ?   14.0   0.2   4.7e-05     0.053       3      28 ..      35      65 ..      33      77 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.57
   PF13432.1 47 ldeAaallraalala 61
                +deA  l+++a++++
  MMETSP0890-20130614|6374_1  3 HDEAKLLYERAIDID 17
                577778888888766 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.7e-05
   PF13432.1  3 lArallraGdydeAlaaleaalala.....P 28
                lA +l ++++y+eA+++l++ala       P
  MMETSP0890-20130614|6374_1 35 LAGLLKEQKKYKEARPLLQRALAILvaklpP 65
                6778889999999999999999866555554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.22   2.5e+02      17      32 ..       3      18 ..       2      29 .. 0.84
   2 ?   12.4   0.2   0.00016      0.18       5      29 ..      33      57 ..      26      75 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.22
   PF13428.1 17 pdeAiallrralalaP 32
                +deA  l++ra+  + 
  MMETSP0890-20130614|6374_1  3 HDEAKLLYERAIDIDE 18
                79999******98776 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00016
   PF13428.1  5 lalarallalGdpdeAiallrrala 29
                  la +l ++  ++eA+ ll+rala
  MMETSP0890-20130614|6374_1 33 NNLAGLLKEQKKYKEARPLLQRALA 57
                57999******************98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.6e-05     0.052       5      58 ..       3      68 ..       1      79 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.6e-05
                HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HHHHHHHHHC......TSHCHCBH CS
   PF12895.2  5 yknAlflaekllaespk.....dp.edaylyalAlclylngeykrAyellrk......leldsssl 58
                +++A +l+e+++  + k      p  ++ l +lA  l ++++yk+A  ll++       +l ++++
  MMETSP0890-20130614|6374_1  3 HDEAKLLYERAIDIDEKtyglnHPeVATDLNNLAGLLKEQKKYKEARPLLQRalailvAKLPPQHP 68
                566666777777776665555423455577778*************99999887777766666664 PP

>> PF10938.3  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   8.1e-05     0.093     102     148 ..      13      60 ..       2      62 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.1e-05
   PF10938.3 102 dvdvviteallPLaktpaavkqAaelld.egkyyeAkaaLkkAedsvv 148
                 + d++ +++ l+   + ++++  a ll+ ++ky+eA+  L+ A++ +v
  MMETSP0890-20130614|6374_1  13 AIDIDEKTYGLNHPEVATDLNNLAGLLKeQKKYKEARPLLQRALAILV 60 
                 68999**********************825689**********98877 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00098       1.1       1      33 [.       9      49 ..       9      50 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00098
   PF13431.1  1 lyekaleld........PnnadaynnLAelllnnGdleeAe 33
                lye+a+++d        P+ a  +nnLA ll+++++++eA+
  MMETSP0890-20130614|6374_1  9 LYERAIDIDektyglnhPEVATDLNNLAGLLKEQKKYKEAR 49
                5788888875444444466688899**************98 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0079         9      17      32 ..       3      18 ..       2      21 .. 0.86
   2 ?    6.2   0.1    0.0078       8.9       4      29 ..      32      57 ..      29      58 .. 0.90
   3 ?   -3.3   0.0       8.5   9.6e+03      14      20 ..      77      83 ..      77      84 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0079
                HHHHHHHHH---HHHH CS
   PF13181.1 17 ydkAkeylekalelkp 32
                +d+Ak  +e+a++++ 
  MMETSP0890-20130614|6374_1  3 HDEAKLLYERAIDIDE 18
                79************97 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0078
                TTT---HHHHTT-HHHHHHHHH---H CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekale 29
                ++nl+ ++++ ++y++A   l++al 
  MMETSP0890-20130614|6374_1 32 LNNLAGLLKEQKKYKEARPLLQRALA 57
                6899999**************99996 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 8.5
                TT-HHHH CS
   PF13181.1 14 lGdydkA 20
                l+d+d++
  MMETSP0890-20130614|6374_1 77 LNDIDNQ 83
                6788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       831  (0.0607812); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.47s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 384.99
//
Query:       MMETSP0890-20130614|6380_1  [L=745]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-79  266.5   0.0    1.5e-79  265.9   0.0    1.2  1  PF00290.15 Tryptophan synthase alpha chain
    1.9e-40  138.8   0.9    3.4e-40  138.0   0.2    1.7  2  PF00291.20 Pyridoxal-phosphate dependent enzyme
    2.7e-06   26.7   0.0    8.1e-06   25.1   0.0    1.7  2  PF00977.16 Histidine biosynthesis protein
    0.00012   21.3   0.0    0.00029   20.0   0.0    1.6  1  PF01884.12 PcrB family
    0.00084   18.3   0.1    0.00084   18.3   0.1    2.4  3  PF05690.9  Thiazole biosynthesis protein ThiG
     0.0052   15.7   0.0      0.015   14.2   0.0    1.7  2  PF00218.16 Indole-3-glycerol phosphate synthase
  ------ inclusion threshold ------
      0.035   13.6   0.1        1.8    8.1   0.0    3.2  3  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF00290.15  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.9   0.0   7.9e-83   1.5e-79       1     255 [.      40     301 ..      40     306 .. 0.91

  Alignments for each domain:
  == domain 1    score: 265.9 bits;  conditional E-value: 7.9e-83
                 HHHHHH------EEB-------HHHHHHHHHHH------SEEE----S--TT---HHHHHHHHHHH----HHHHHHHHHHHG.GG-SS-EEEB--SGGGTTS-....SHHHHH------B-TT-BTTTH..HHHHHHHHHTT---BEEE-TTS-HHHHHHHHHH--....--EEE-S--------SS--TTHHHHHHHHHHH-.SS-EE------SHHHHHHHHH------EE--CCCCC--.--SSS----HHHHHHH---T CS
  PF00290.15   1 faklkakkeaafvpfvtagdpdletsleileaLeeagadviElGiPfsdpladGpviqeaslraLakgvtleqvlelveevr.kelevPivlltyynlvlkygiekfvaeakeagvdgliipDlPleea..eelveaaekkgielvflvapttsderlkeivekae....gfvYlvsraGvTGarealeeevkelvervkklt.avpvavGFGistpeqvkkvaekvadGvivGSalvdkieeeleekekklekleelagklk 255
                 f+k+++ +++a+v ++t g+p+le+++ ++ a+e++gad+iElG+Pf+dp+adG++iq+ +++aL++gv l++++++v+++r  +le+P+vl+ yyn+  +yg e++ +++++ag+dg+ii+DlP+eea  e + +a++++g+ +v+lvaptt++erl+ ++++a+    g +Y+vs++GvTGa +a+++e++ ++er ++    vp+avGFGis+pe+v+++a+ +adG++vGSa++++++ e+  + +  + l++++++l 
  MMETSP0890-20130614|6380_1  40 FKKSREAGKSALVGYLTCGYPKLEETAPLMVAMEKGGADIIELGVPFTDPMADGATIQQCNEMALEQGVGLNDCIKTVHNAReLGLEAPVVLMGYYNPFRAYGFENLAQDCANAGIDGFIIVDLPPEEAqlEGVLDACRNFGLGFVPLVAPTTTNERLSYLAQAAQstggGMLYCVSVLGVTGAAAATRAELEPFLERCQAQAnGVPLAVGFGISKPEHVSELASLGADGIVVGSAIIRALDLEATAH-ERSQALTTFTQTLT 301
                 78899999**************************************************************************999*******************************************933479***************************99886444479***************************976649**********************************998544333.33344444444444 PP

>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         1     2e+03      74     124 ..     176     230 ..     173     278 .. 0.59
   2 !  138.0   0.2   1.7e-43   3.4e-40       5     307 .]     382     705 ..     378     705 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1
                 HHHH---EEEEEEETTS-C....HHHHHHHC---EEEE-TT-SSSGGCHCCHHHH CS
  PF00291.20  74 aaallglkativvpsgapp....ekialiralGaevilvvssvegdyddaaelae 124
                 a++++gl ++ +v  ++++    + +++ ++ G     +vs ++ + ++aa+ ae
  MMETSP0890-20130614|6380_1 176 ACRNFGLGFVPLVAPTTTNerlsYLAQAAQSTGGGMLYCVSVLGVTGAAAATRAE 230
                 6777777766666444333255544455555555444444444444444444443 PP

  == domain 2    score: 138.0 bits;  conditional E-value: 1.7e-43
                 -----EEE...----------EEEEEGGGSTTSBCCHCHH.HHHHHCHHHC---EE.EEE--S----HHHHHHHH---EEEEEEETT.S-C..HHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..HHHHHHHHHHS...--TT.-CHHHHHHHHT-HHCCCHHHH..---.-..-B--------HHHHHHCCCCCTHTT---EEEEEGGG-TT-...................................S...----T.TT-GGGHHHHSS---E..EE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE-B CS
  PF00291.20   5 vgpTPlvrlpsallsklgganvflKlEslnptgSfKdRga.anallralakggkgv.veassGNhGaavAlaaallglkativvpsg.app..ekialiralGaevilvvssvegdyddaaelaekalelvrplkgei...ldqs.ndpdviaGygtiglEileqlg..kpd.pdavvvpvGgGgliaGiakglkelilpkirvigvepegsdalarslragervq..............ldkk......ttia.glscgtpldgelafelidelvd..evvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvltg 307
                  gpTPl +++ +l  ++gga+++lK+E l +tg++K+  a  +all a++ g++++ +e+ +G+hG+a+A ++allgl++++++ +  + +   ++ ++  lGa+vi v s+     d+  e++++++++v+   + i   ++++  +  v  +++ ig E  eq+   +++ pdavv++vGgG+++ G+ + +    ++ + + g+e++g  ++  s++  + +               +  +      ++i+ gl ++     +   ++  + ++  ++  +++eeal+a  +l r+egi++    ++a+a +++ +k+ +   + +k+v++ l+g
  MMETSP0890-20130614|6380_1 382 GGPTPLYYAE-RLTEQIGGAQIWLKREELAHTGAHKINNAiGQALL-AKRLGKTRIiAETGAGQHGVATATVCALLGLDCIVYMGAVdCARqsLNVFRMNVLGAQVIPVRSGQATLKDAINEAMRDWVTNVKDTHYLIgsaIGPHpFPTIVRDFQSVIGREAKEQFLkaNNKlPDAVVACVGGGSNAVGMFHDFIP--ESSVELHGAEADGD-SVQGSATLSRGSPgvlhgtrtyllqndQ--TgqvqatHSISaGLDYPG----VGPEHAFLKDSGraKYHPINNEEALDAFSRLSRTEGIIPALEPSHAVALAIKIAKSMN---DPNKSVLINLCG 705
                 69******87.889999***********************655555.5578898888***************************6655766689**************999955555555555556689998887777988888899*******************7774444557*******************9..88*********663.4444444444333333333555544331..144433355555776655....44444444444458888*********************97777777777777666654...466778877887 PP

>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8   3.5e+03      33      51 ..     145     163 ..     143     171 .. 0.84
   2 !   25.1   0.0   4.1e-09   8.1e-06      51     118 ..     220     289 ..     191     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.8
                 HHHHHHHH----EEEEEEH CS
  PF00977.16  33 elakkyeeegadelhvvDL 51 
                 +la++  ++g+d +++vDL
  MMETSP0890-20130614|6380_1 145 NLAQDCANAGIDGFIIVDL 163
                 5788889999999999998 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 4.1e-09
                 HHHHH.HHHHHHHHHHHHHHTT-S.SEEEEE----SHHHHHHHHH----EEEESHHHHH-THHHHHHHHH CS
  PF00977.16  51 Ldaak.egreanldlveeiaeevf.iplqvGgGIrsledveelleagadkviigtaavknpelikelaek 118
                 +++a+ + r++    +e+   + + +pl vG GI++ e+v+el ++gad +++g+a ++  +l  ++ e+
  MMETSP0890-20130614|6380_1 220 VTGAAaATRAELEPFLERCQAQANgVPLAVGFGISKPEHVSELASLGADGIVVGSAIIRALDLEATAHER 289
                 4544426677777899998766667**********************************99987776665 PP

>> PF01884.12  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00029     175     223 ..     237     285 ..     222     292 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.5e-07
                 HHHCT-SSSEEEE-----SHHHHHHHHTT.-SEEEE--HHHH-H..HHH CS
  PF01884.12 175 kvkkvledarlivGGGiksaEkAkelvkaGADvivvGnvveekkkveea 223
                 + +++ ++++l vG Gi ++E+  el+  GAD ivvG ++  + ++e +
  MMETSP0890-20130614|6380_1 237 RCQAQANGVPLAVGFGISKPEHVSELASLGADGIVVGSAIIRALDLEAT 285
                 567788899*******************************998888765 PP

>> PF05690.9  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.3e-07   0.00084     172     226 ..     240     295 ..     212     316 .. 0.82
   2 ?   -2.3   0.0      0.84   1.6e+03      70      94 ..     412     436 ..     404     444 .. 0.89
   3 ?   -3.9   0.0       2.6   5.1e+03     189     221 ..     687     719 ..     682     722 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.3e-07
                 HH-.SS-BEEE-----HHHHHHHHH----EEE-SCCCHTSSSHHHHHHHHHHHHH- CS
   PF05690.9 172 eea.kvPvivDAGigtpsdaaqamelGadavllntavaeakdpvamArafklavea 226
                 ++a  vP+ v  Gi +p+++ +   lGad++++ +a+ +a d  a A+  ++a+++
  MMETSP0890-20130614|6380_1 240 AQAnGVPLAVGFGISKPEHVSELASLGADGIVVGSAIIRALDLEATAHERSQALTT 295
                 44448*************************************99999877777655 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.84
                 ----SHHHHHHHHHHHHCTT--SCE CS
   PF05690.9  70 aGaktaeeAvriarlarevletnli 94 
                 +Ga++ ++A+  a la+ + +t++i
  MMETSP0890-20130614|6380_1 412 TGAHKINNAIGQALLAKRLGKTRII 436
                 699999**********999988876 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 2.6
                 HHHHHHH----EEE-SCCCHTSSSHHHHHHHHH CS
   PF05690.9 189 daaqamelGadavllntavaeakdpvamArafk 221
                 ++a++m+   ++vl+n      kd +++A+a++
  MMETSP0890-20130614|6380_1 687 KIAKSMNDPNKSVLINLCGRGDKDMITVAKALQ 719
                 667788888888999998888899999999887 PP

>> PF00218.16  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.4   4.7e+03     126     158 ..     176     208 ..     173     215 .. 0.82
   2 !   14.2   0.0   7.7e-06     0.015     214     252 ..     249     287 ..     226     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.4
                 HHHHTT-SEEEEECCCS-HHHHHHHHHHHCCTT CS
  PF00218.16 126 eAralgadavLLivavlsdeeleelaeaakslg 158
                   r++g   v L++ + ++e+l+ la+aa+s g
  MMETSP0890-20130614|6380_1 176 ACRNFGLGFVPLVAPTTTNERLSYLAQAAQSTG 208
                 568888889999999999999999999999987 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.7e-06
                 EE----SHHHHHHHCCT.--EEEE--CCCC-TTHHHHHH CS
  PF00218.16 214 aeSGiktredveklkkaganalLvGesLmraedvkkaik 252
                    Gi+++e+v++l++ ga+++ vG++++ra d++++ +
  MMETSP0890-20130614|6380_1 249 VGFGISKPEHVSELASLGADGIVVGSAIIRALDLEATAH 287
                 556*****************************9998776 PP

>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.28   5.5e+02      13      59 ..      26      77 ..      18      81 .. 0.75
   2 ?    8.1   0.0   0.00094       1.8      45      84 ..     142     182 ..     109     195 .. 0.81
   3 ?    0.1   0.0       0.3   5.8e+02      48      65 ..     257     274 ..     238     307 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.28
  PF02225.17 13 agygisegsckdddlaksdvkGkIvlvrrgvctf...seka..evaqeaGAk 59
                 ++ is+g +  d ++ks  +Gk +lv   +c++    e a  +va e+G++
  MMETSP0890-20130614|6380_1 26 EETRISGGKAILDAFKKSREAGKSALVGYLTCGYpklEETAplMVAMEKGGA 77
                56677888888999999999*******8888876665333355999999865 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00094
  PF02225.17  45 tfsekaevaqeaGAkgviiin.pseaalpggtkvgpsdvgi 84 
                 +f + a+ +++aG  g+ii++ p+e+a+ +g  + ++++g+
  MMETSP0890-20130614|6380_1 142 GFENLAQDCANAGIDGFIIVDlPPEEAQLEGVLDACRNFGL 182
                 678889999*************9999999998888888876 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.3
  PF02225.17  48 ekaevaqeaGAkgviiin 65 
                 e + + +++GA g+++++
  MMETSP0890-20130614|6380_1 257 EHVSELASLGADGIVVGS 274
                 55677899********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.11u 0.41s 00:00:01.52 Elapsed: 00:00:00.93
# Mc/sec: 1919.66
//
Query:       MMETSP0890-20130614|6383_1  [L=1108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.45u 0.38s 00:00:01.83 Elapsed: 00:00:01.23
# Mc/sec: 2158.67
//
Query:       MMETSP0890-20130614|6388_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-53  179.3   0.1    4.2e-53  179.0   0.1    1.1  1  PF04442.9 Cytochrome c oxidase assembly protein CtaG/Cox11


Domain annotation for each model (and alignments):
>> PF04442.9  Cytochrome c oxidase assembly protein CtaG/Cox11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.1   3.1e-57   4.2e-53       7     151 ..       1     148 [.       1     149 [. 0.94

  Alignments for each domain:
  == domain 1    score: 179.0 bits;  conditional E-value: 3.1e-57
   PF04442.9   7 lfCevtGlngktkk...kaeaaeekasevdksreikvefdanvakelpwefkpeqkevevkpGetalvfyeakNksdkeivgqAvysvtPeeaakYfnKieCFCFeeqtLkpgeevempvvfvidpelaedkelkkvktitLsYtffe 151
                 +fC++tG++g+tk+   ++ea++e  + v+ sr ++v+fd++v+++lpw+fkp q+++++ pGe  l+f++ kN+s+k+i+g+A+y+v+P +a+ YfnKi+CFCF+eq+L+p+eev+mpv+fvidp++ +d++l++v++itL Y ff+
  MMETSP0890-20130614|6388_1   1 MFCQTTGFGGTTKRledNEEAKREMLKPVEGSRILRVTFDGQVSSSLPWTFKPLQRDIKLIPGESVLAFFTCKNNSNKAITGIATYNVQPPKAGVYFNKIQCFCFDEQRLEPNEEVDMPVLFVIDPKFLQDPHLQRVSNITLYYNFFK 148
                 79***********976444444555588999********************************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 627.28
//
Query:       MMETSP0890-20130614|6389_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.0   0.1    0.00049   19.8   0.0    1.6  1  PF02820.13 mbt repeat
     0.0051   16.3   2.2      0.011   15.2   0.6    2.1  2  PF11717.3  RNA binding activity-knot of a chromodomain


Domain annotation for each model (and alignments):
>> PF02820.13  mbt repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.2e-08   0.00049      12      60 ..     177     228 ..     170     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 7.2e-08
                 CEEEEEEEEEE---...EEEEEE----CCG-EEEETT-TTEE----TTT--- CS
  PF02820.13  12 ssicvATVvevlge...rlrlrldgydsendfwvdvdSpdIfPvGwcekngh 60 
                 ++   AT+++v +e   r++++++g+ ++ d w+d+dSp I P  + + +g+
  MMETSP0890-20130614|6389_1 177 HQWLEATIMRVEQEpvrRVLIHYNGWPTRWDEWLDADSPRIAPFRTRTLHGQ 228
                 55566999999885333799***********************877766665 PP

>> PF11717.3  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.6   1.7e-06     0.011      15      51 ..     178     213 ..     167     216 .. 0.77
   2 ?   -1.3   0.0      0.23   1.6e+03       7      28 ..     447     467 ..     440     472 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.7e-06
                 EEEEEEEEEEEE----EEEEEE-----SS--EEE-TT CS
   PF11717.3  15 elrkAeilsirtkkgkyeYYVHYeefNkRlDeWVtae 51 
                 ++ +A+i+ +++++      +HY ++  R+DeW +a+
  MMETSP0890-20130614|6389_1 178 QWLEATIMRVEQEP-VRRVLIHYNGWPTRWDEWLDAD 213
                 56677777666655.45558*************9987 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.23
                 EEEEETTTEEEEEEEEEEEE-- CS
   PF11717.3   7 vlvekeegelrkAeilsirtkk 28 
                 v+ ++ ++e+ +A i s+++++
  MMETSP0890-20130614|6389_1 447 VPTQH-DNETTPAAISSAQEQA 467
                 56667.9*********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.93
# Mc/sec: 1839.78
//
Query:       MMETSP0890-20130614|6391_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-11   42.7   0.2      9e-11   41.2   0.1    1.8  1  PF00226.26 DnaJ domain
     0.0015   18.8   0.0     0.0038   17.6   0.0    1.8  1  PF13637.1  Ankyrin repeats (many copies)
     0.0019   18.1   0.7     0.0077   16.2   0.1    2.4  2  PF13606.1  Ankyrin repeat
     0.0035   17.4   0.1      0.012   15.7   0.0    2.0  1  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.041   14.0   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
      0.019   14.6   0.1      0.041   13.5   0.1    1.5  1  PF00023.25 Ankyrin repeat
       0.17   10.0   7.5       0.15   10.2   4.2    1.6  2  PF03547.13 Membrane transport protein
        0.2    9.5  10.7       0.28    9.0   7.4    1.2  1  PF01366.13 Herpesvirus processing and transport protein
       0.21   11.4  14.6        0.3   10.9  10.1    1.2  1  PF06217.7  GAGA binding protein-like family
       0.29    9.0  22.0       0.38    8.6  15.2    1.2  1  PF02724.9  CDC45-like protein
       0.56   10.1  10.8       0.88    9.5   7.5    1.2  1  PF04651.8  Poxvirus A12 protein
          2    8.0  12.9        2.9    7.4   8.9    1.4  1  PF02862.12 DDHD domain
        2.1    7.1  13.7        2.7    6.7   9.5    1.1  1  PF00740.13 Parvovirus coat protein VP2
        2.1    7.6  13.1        9.8    5.4   9.1    1.9  1  PF07565.8  Band 3 cytoplasmic domain
          7    5.3  11.4        9.4    4.9   7.9    1.3  1  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   9.8e-14     9e-11       4      52 ..     126     175 ..     123     182 .. 0.92

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 9.8e-14
                 HHTT--T.T--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHH CS
  PF00226.26   4 eiLgvpk.dasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAye 52 
                  +L++++ d + ++ kk+Yr l+lk+HPDkn ++e+ea+e+ + in+A +
  MMETSP0890-20130614|6391_1 126 RVLELDPnDWNLAQAKKNYRLLCLKHHPDKNRGNEKEAAERTATINKAMQ 175
                 589999889999************************************98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.1e-06    0.0038      25      52 ..     301     330 ..     268     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.1e-06
   PF13637.1  25 idinrt..desGntaLhiAalrgnieilkl 52 
                 +d  +t  d+ Gn++Lh+Aa+++ ie+++l
  MMETSP0890-20130614|6391_1 301 VDALATelDSAGNSLLHYAAYYNSIEAVEL 330
                 56667777********************97 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.8     9e+03       5      18 ..     271     284 ..     269     286 .. 0.75
   2 !   16.2   0.1   8.5e-06    0.0077       2      20 ..     312     330 ..     311     336 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 9.8
   PF13606.1   5 pLhlAasngrielv 18 
                 +  + a ng+ e++
  MMETSP0890-20130614|6391_1 271 AVLVLAINGNREFL 284
                 56778999998886 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 8.5e-06
   PF13606.1   2 GnTpLhlAasngrielvea 20 
                 Gn++Lh+Aa++++ie+ve+
  MMETSP0890-20130614|6391_1 312 GNSLLHYAAYYNSIEAVEL 330
                 9***************997 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05     0.012      12      36 ..     308     332 ..     300     338 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-05
   PF13857.1  12 tdeggntpLhlAakggalevvrlLl 36 
                 +d +gn++Lh+Aa++++ e+v+l+ 
  MMETSP0890-20130614|6391_1 308 LDSAGNSLLHYAAYYNSIEAVELIM 332
                 6899*****************9987 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.5e-05     0.041      56      80 ..     307     333 ..     239     337 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.5e-05
   PF12796.2  56 d..kegntpLhlAvrnghlelvklLle 80 
                 +    gn+ Lh+A+ ++++e+v+l++ 
  MMETSP0890-20130614|6391_1 307 EldSAGNSLLHYAAYYNSIEAVELIMR 333
                 134689999999999999999999875 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.5e-05     0.041       2      22 ..     312     332 ..     311     336 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.5e-05
                 SCBHHHHHHHTTHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLl 22 
                 G++ LH+Aa+++++e v+l  
  MMETSP0890-20130614|6391_1 312 GNSLLHYAAYYNSIEAVELIM 332
                 99***************9975 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.87     8e+02     239     263 ..      61      85 ..      49     116 .. 0.67
   2 ?   10.2   4.2   0.00016      0.15     150     229 ..     168     253 ..     161     308 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.87
  PF03547.13 239 lklilnPntyasllglilalvsfkw 263
                 l li n n   s+l+li++ v + +
  MMETSP0890-20130614|6391_1  61 LLLIHNRNHFFSILSLIFGIVFIGL 85 
                 5555555666666666666554433 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00016
  PF03547.13 150 aklliseefp.etaasivsikvdsdvvsldgse.aleteeeikedgklhvtvrksnasrsdivs....stprpsnltnaeiyslqm 229
                 a++ + ++   +   s +++k+d   +s+d+++ + ete++ ke++k   +  k  +++++  +    ++ +++++ +++++s+++
  MMETSP0890-20130614|6391_1 168 ATINKAMQDIkNFVTSTQNDKDDHYSTSSDEHNePQETEAQKKEEKKNTAEEEKKRTQERQAQEkrynEEVQARKNAQRRKKSKRS 253
                 5555556665577789999*******************************999999999888888988555566666666665553 PP

>> PF01366.13  Herpesvirus processing and transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.4    0.0003      0.28     377     471 ..     148     253 ..      85     257 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0003
  PF01366.13 377 cykaflskplfkrllkeenelyealkslLeelr..............saeketaeessg..........aeakaagearrgedkeaeeegadveellervekdvevRkkaYleklskrg 471
                 c+k++ +k   ++   e  e ++++++ +++++              s                     +ea++++ +++++++e+++++++ +++ +r +++v++Rk+a  +k skr+
  MMETSP0890-20130614|6391_1 148 CLKHHPDKNRGNEK--EAAERTATINKAMQDIKnfvtstqndkddhyS----------TssdehnepqeTEAQKKE-EKKNTAEEEKKRTQERQAQEKRYNEEVQARKNAQRRKKSKRS 253
                 77777777666554..78888999999999999666655555444431..........034444444322333333.33333334444557889999*************999999987 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  10.1   0.00033       0.3      69     207 ..     136     270 ..      80     274 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00033
   PF06217.7  69 alaernkalverdnkllalllvens..pvgvqvlsetksihslqmlkh.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvingvslDestlP 207
                  la+      +++ +ll l+++ ++   ++ ++ ++t +i++  +  + +++  s+++ ++ + +++   +++++e++ +kk++k+++a+++k+++++++ ++++ +++ +++++a++r+k+++ +i  +  +  +D  t P
  MMETSP0890-20130614|6391_1 136 NLAQ-----AKKNYRLLCLKHHPDKnrGNEKEAAERTATINKAMQ--DiKNFVTSTQNDKDDHYSTSSDEHNEPQETEAQKKEEKKNTAEEEKKRTQERQAQEKRYNEEVQARKNAQRRKKSKRSNISPTTKQNPMDLCTNP 270
                 2332.....344444444444333333555555555555554333..34556556555566666666665666667776777777777777777777777665555555555555556777777777777777777777766 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  15.2   0.00041      0.38     105     200 ..     158     253 ..      95     261 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00041
   PF02724.9 105 gdieeelekeeeerdayealvemkeeee......eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrreree 200
                 g+++e  e+  + ++a+++ +      +      +++d++ ++ +de +e+++ + ++k+e+++  e+++++++e+++q+kr ne+ +a++  +rr++ +++
  MMETSP0890-20130614|6391_1 158 GNEKEAAERTATINKAMQDIK------NfvtstqNDKDDHYSTSSDEHNEPQETEAQKKEEKKNTAEEEKKRTQERQAQEKRYNEEVQARKNAQRRKKSKRS 253
                 222222222222233333333......344433366666666667777777777777777777777777788888889999998866655555555544443 PP

>> PF04651.8  Poxvirus A12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.5   0.00096      0.88      16     105 ..     168     256 ..     164     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00096
   PF04651.8  16 etlnKltPqLrtlLahisgeqavkkgnlaeaenaaeeleakagkerasassskskrkskstskkksssassrsrrsGaprrrktalsste 105
                  t+nK    +++ ++  ++++  + + +++ +n+++e+ea++ +e+ +++++++kr+++ + ++k+ +   ++r++ a+rr+k++ s+  
  MMETSP0890-20130614|6391_1 168 ATINKAMQDIKNFVTSTQNDKDDHYSTSSDEHNEPQETEAQKKEEKKNTAEEEKKRTQERQAQEKRYNEEVQARKN-AQRRKKSKRSNIS 256
                 59**********************99999999999999**999999999999999999999999999977777665.5555555533322 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.9    0.0032       2.9      94     180 ..     163     241 ..      93     268 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0032
  PF02862.12  94 k....esltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekreelklr 180
                 +     ++++  +           +++++++s+   ++   s++++e +e++e++ ++ k+++++++e+e+++++e++ ++k+ +ee++ r
  MMETSP0890-20130614|6391_1 163 AaertATINKAMQ-----------DIKNFVTSTQNDKDDHYSTSSDEHNEPQETEAQK-KEEKKNTAEEEKKRTQERQAQEKRYNEEVQAR 241
                 2322222222223...........3333333333222222222222222222222221.11111111111111111111111111221111 PP

>> PF00740.13  Parvovirus coat protein VP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   9.5     0.003       2.7     264     424 ..     104     263 ..      86     281 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.003
  PF00740.13 264 karktrkgdtaqqpknwlpgPaqvgl.vpeqefeassagafkvpvvrsaststkeqptkledrkangaprytyakqhgedtaaskeaeerltfdakneeegettqkeknqrlptseeeikelnavavketlnlktneqsgkteinltnvknsyllpgavwns 424
                 + +++++ d+++ ++ ++ +   v    p++   a++++++   + ++  + +++++ +  +r a +++  +  k+ +++t+  k+++ + + d++ne  +et++++k+++ +t eee k +++++++e    +++ q  k+++  ++ k s + p+  +n+
  MMETSP0890-20130614|6391_1 104 RRHEKKEEDFFSSQEPNIDKALRVLElDPNDWNLAQAKKNYRLLCLKHHPDKNRGNEKEAAERTATINKAMQDIKNFVTSTQNDKDDHYSTSSDEHNE-PQETEAQKKEEKKNTAEEEKKRTQERQAQEKR-YNEEVQARKNAQRRKKSKRSNISPTTKQNP 263
                 44555555566666666666666666666666677777777777777777777888888888888888888888888888888866666666555444.44444444444444444444434444444422.345555555555555555555555554444 PP

>> PF07565.8  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.1     0.011       9.8     105     180 ..     185     300 ..     136     309 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.011
   PF07565.8 105 k..............................kaeqselslqkslelekakeseslekv..............................eeekkkanekllrkipegaE.AsvVLv....GevdfLeqpviafvRLseavll 180
                 +                              +                                                        +++k+++ ++++++ p +      VLv    G  +fL+++++ f+R ++ ++l
  MMETSP0890-20130614|6391_1 185 QndkddhystssdehnepqeteaqkkeekknT-------------------------AeeekkrtqerqaqekryneevqarknaqrrKKSKRSNISPTTKQNPMDLCtNPAVLVlainGNREFLQNTFMEFLRDQDKATL 300
                 23444433333322222211111110111110.........................0112222233334444455555555555554555555556677777777541234555558899*************8876665 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.9      0.01       9.4     132     223 ..     162     253 ..     114     311 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.01
   PF14362.1 132 slsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaalee 223
                  + ++ a+ +++++++++ +++ q++ ++++ + ++e +  ++t+ + k +   +++e+ ++ q++ ++ k+ +++ qa+ +a++rk+  ++
  MMETSP0890-20130614|6391_1 162 EAAERTATINKAMQDIKNFVTSTQNDKDDHYSTSSDEHNEPQETEAQKKEEKKNTAEEEKKRTQERQAQEKRYNEEVQARKNAQRRKKSKRS 253
                 33444445555555555556666666666666666666644444444444444444444444444444444444444444444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2813  (0.205749); expected 273.4 (0.02)
Passed bias filter:                      816  (0.059684); expected 273.4 (0.02)
Passed Vit filter:                       188  (0.0137507); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.29u 0.43s 00:00:01.72 Elapsed: 00:00:00.84
# Mc/sec: 967.10
//
Query:       MMETSP0890-20130614|6393_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-40  139.2   0.0    1.9e-40  138.5   0.0    1.3  1  PF00365.15 Phosphofructokinase
    0.00094   17.9   0.0     0.0019   16.9   0.0    1.4  1  PF01513.16 ATP-NAD kinase
  ------ inclusion threshold ------
      0.046   13.0   0.0       0.11   11.7   0.0    1.6  1  PF00781.19 Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> PF00365.15  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   4.1e-44   1.9e-40       4     280 ..     100     384 ..      98     386 .. 0.86

  Alignments for each domain:
  == domain 1    score: 138.5 bits;  conditional E-value: 4.1e-44
                 --EE--------HHHHHHHHHHHH.C---E.E-----------------B-GGGGTT-TT----TT-B---CGGCS--------HHHHH-----EEEE---------HHHH.H--.--EE-----TT---TT-SS----HHHHHHHHHHHHHHHHHHHHTT-EE.EEEE-------HHHH------..--EEEBTTS---HHHHHHHHHHHHH----SEEEEEE-----......H......HHHHHHHHHH-.---EEEEE---TT------HHHHHHHHH---HHHHHH CS
  PF00365.15   4 avltsGGDapGmnaavravvrsai.akGle.vfvireGyeGlvegeikklevesvsdiiqrgGtilgsarlkefkeeegrkkaiekLkkagidalvviGGDGsltGakllteehg.lnivglvGtiDnDlsgtDatiGfdtalervveaiDkirdtasshervf.vvevmGrhcgdlalvagiagg..advivipeaekseeelverlkksrergkrsaivivaegvid....lkai....tseavkklkkerlgldtrvtvLGhvqrGGtptafDrilasrlgaeaveal 280
                 a++t GG +pG+n  v+ + r+ +  +G++ v++i+ Gy Gl +++ +++e+    ++ ++gGtilg++r +  +ee      +++L+++ i+al v+GGDG+l+Gak++    + l +++++ tiDnD+   D   Gfdta+e + +ai   +  a++  r   +v +mGr +g+la+ a++a+    d+ +i e+ ++ ++l++ l+++  + k sa+++vaeg+ +    + +i    +++ +k+ + e+ g+  +    G+  r   p a D il+srl+a+av+a 
  MMETSP0890-20130614|6393_1 100 AIVTCGGLCPGLNTVVQELYRTLYeQYGVKrVYGIKGGYGGLADEDFEPMEKILNPSLYRQGGTILGTSRGQCSAEEM-----VKSLTNKKINALFVVGGDGTLRGAKTICTAAPeLRLIAVPKTIDNDIPIIDKSFGFDTAVEAARNAIHTASVEAQAFPRGLgLVRLMGRDAGFLAVHATLACPgdVDACLIKESGFDLDQLIHYLEHK-LNTKGSAVLVVAEGIGNklqpNVDIgpwlADTLKKRFALENGGFTLKYVDPGYAVRAIGPNAADTILCSRLAANAVHAA 384
                 89*******************97624687549**************************************98777665.....568999*******************99765545********************************************996449******************96225689**************99865.5678899********98765533331111444555555555578888888899999999*****************985 PP

>> PF01513.16  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.1e-07    0.0019      12      98 ..     110     207 ..      98     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.1e-07
                 CCCHHHHHHHHHTT-E-.EEEEEE----------------------..................EEEESS-TCCCGGSSEEEEE-----HHHHHCCHCC CS
  PF01513.16  12 eaeeraselarllldal.vlfvtveeklgesllsasefryevishkekvktld...........dtrnaaremveegvdlivvlGGDGTaldvarllqd 98 
                 + +++++el+r+l++   v  v+  ++  + l++  +f++ ++  +++++++              ++ ++++ ++++++++v+GGDGT++ + ++++ 
  MMETSP0890-20130614|6393_1 110 GLNTVVQELYRTLYEQYgVKRVYGIKGGYGGLAD-EDFEPMEKILNPSLYRQGgtilgtsrgqcSAEEMVKSLTNKKINALFVVGGDGTLRGAKTICTA 207
                 5678899999999999635556666655555555.48999999999999998899999999999999999**********************9988875 PP

>> PF00781.19  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.11      33      68 ..     164     199 ..     135     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
  PF00781.19  33 vvetee.ageaealeiaaalkdaddlivvvGGDGtvn 68 
                 +  t++ +  ae++++ ++ k++ ++++vvGGDGt+ 
  MMETSP0890-20130614|6393_1 164 ILGTSRgQCSAEEMVKSLTNKKI-NALFVVGGDGTLR 199
                 45566667788889988888888.7**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.78
# Mc/sec: 1459.32
//
Query:       MMETSP0890-20130614|6396_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-37  128.9   0.0    1.8e-37  128.4   0.0    1.2  1  PF00551.14 Formyl transferase


Domain annotation for each model (and alignments):
>> PF00551.14  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   1.3e-41   1.8e-37       2     180 ..      64     241 ..      63     242 .. 0.90

  Alignments for each domain:
  == domain 1    score: 128.4 bits;  conditional E-value: 1.3e-41
                 EEEEEE-----HHHHHHHHHHCTS-EE-EEEEEES-TT----HHHHHHH-EEEEB-GCG...SCSHHHCHHHHHHHHHCG--SEEEES---S---HHHHCCT---EEEEESS-TTTTB---HHHHHHH----EE-EEEEE--SS----EEEEEEEEE--TT--HHHHHHHCCCCHHHHHHHH CS
  PF00551.14   2 kivvlisgtgsnlqalldalrkgnleaeivlvvtnkdkaaglekaeqasiptevfeekk...ltprsqseselakslaelkadlivlagygkllpkellqafplkilniHpSlLPrfrGaaaiqraleaGdketGvtvhfvdeelDtGpilaqkkveviaedtseelenrvaeaehkalvea 180
                 ++vv++s++++ l ++l ++++ + e  + l+++n++ ++    aeq + p+  + +      + +++ e++  + ++e+kad+ivla y+++l++ + q+++++i+niH+SlLP+frGa+a+ +a+ +G+k +G t h+v+e lD Gpi+aq++v+ ++ d+  +l+++ ++ae  al +a
  MMETSP0890-20130614|6396_1  64 RVVVFASNESHALIEVLSRANDTTYE--VPLIISNHQSLY--PVAEQWKTPFVYLPRHGkqqEDDKRAIEEKEFALIEEAKADVIVLARYMQILSPHFCQLYQNRIINIHHSLLPSFRGARAHAQAYDRGVKLIGGTAHYVTEHLDDGPIIAQAAVPCDHRDSIADLRRKGQDAECLALSTA 241
                 89******************999998..999*********..5566666666666655533344447888888899***************************************************************************************************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 841.72
//
Query:       MMETSP0890-20130614|6402_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-40  139.2   0.0    1.8e-40  138.6   0.0    1.3  1  PF00069.20 Protein kinase domain
    7.3e-21   74.3   0.0    2.5e-20   72.5   0.0    1.7  1  PF07714.12 Protein tyrosine kinase
    0.00026   20.6   0.0    0.00026   20.6   0.0    2.2  2  PF01636.18 Phosphotransferase enzyme family
     0.0024   17.1   0.0     0.0041   16.3   0.0    1.3  1  PF01163.17 RIO1 family
  ------ inclusion threshold ------
      0.022   13.7   0.0      0.043   12.7   0.0    1.4  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   6.7e-44   1.8e-40      46     260 .]       9     265 ..       2     265 .. 0.90

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 6.7e-44
                 HHHHHHHHHH.H-TTB--EEEEEEE..STEEEEEEE--SC-EHHHHHH.............HHCCB.-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHHHH............................TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20  46 vrElkilkkl.sHpnivkllevfee..kdelylvleyveggdlfdllk.............kegkl.seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvll............................kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++E+ +l++l   p iv l+++  +  + ++ +++e  e+ dl+++l+             ++ +l   + i+  ++q+le+++ +H+++i+H DLKp+N+L+  +g+l+++DFG+a+ +   +++   +t+ gt +Ym+PE +                              +   ++++DvWslG+ily+++ g++pf +    + +++++ i ++k e d+p+    s+++ d ++ +l+++p++R+ +e +l+h++l
  MMETSP0890-20130614|6402_1   9 ANEITLLRRLkGKPGIVDLYAAHVDvkHGSINMIMEAGEA-DLATVLSqsttaqkanpqesNYPPLnHGNFIRLAWQQMLEAVRTIHDDRIVHGDLKPANFLFV-QGRLRLIDFGIARAIknDTTNIYRDTQIGTLNYMSPEAIHdtnplnqrerarfdknnqrmrsvapahkPKMRVGRASDVWSLGCILYQMIYGRPPFGHL---NLYAKLQAIANPKHEIDIPDAPLASDDAIDCLRGCLQREPSARPDIEALLHHRFL 265
                 45********55899*******9998899999******99.9999999888888888765555555444557777899**************************.*************987666666889*************99999**********************99878889************************99...8888888888999999999999999***************************985 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   9.3e-24   2.5e-20      49     257 ..       9     261 ..       2     263 .. 0.90

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 9.3e-24
                 HHHHHHHHHT.-BTTB--BEEEBE..SSSSEEEEEE---B--HHHHHHHT...........GTTGSBHHHHHHHHH.HHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.............................EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-B..S---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12  49 leeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlefLrkk...........ekekltlkdllkfal.qiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.............................ftsksDvWsfGvllwEiftlgespypglsneevlell.kegkr..lekpekcpeelyelmkqCweeepeeRptfkelve 257
                  +e+ ++++l   p iv l+++ +  k++++ +++e   + dL ++L ++           + + l++ + +++a+ q+ ++++ +++ ++vH dL   N L   +   ++ DfG+ar i++d +   ++++   +++m+pE++++++                             +  +sDvWs G++l+ ++  g+ p+ +l+    l+++ + +++  ++    ++++  + ++ C+++ep+ Rp++++l +
  MMETSP0890-20130614|6402_1   9 ANEITLLRRLkGKPGIVDLYAAHVdvKHGSINMIMEA-GEADLATVLSQSttaqkanpqesNYPPLNHGNFIRLAWqQMLEAVRTIHDDRIVHGDLKPANFLFV-QGRLRLIDFGIARAIKNDTTNIYRDTQIGTLNYMSPEAIHDTNplnqrerarfdknnqrmrsvapahkpkmrVGRASDVWSLGCILYQMIY-GRPPFGHLNLYAKLQAIaNPKHEidIPDAPLASDDAIDCLRGCLQREPSARPDIEALLH 261
                 68999*****899*********997778889****96.557*****************9999999999999999972689**********************99.78899**********999999999999***************9**********************************************98.99****9988887777754455511555567999********************99875 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.6e-08   0.00026     147     196 ..      77     124 ..      42     126 .. 0.72
   2 ?   -4.0   2.4       3.2   8.6e+03     101     101 ..     352     352 ..     285     405 .. 0.54

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 9.6e-08
                 HHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 147 eleervlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfedag 196
                  + + ++++++++++   + +++HgDl+p+N l+   +gr+ +iDf+ a+
  MMETSP0890-20130614|6402_1  77 NFIRLAWQQMLEAVRTIHDDRIVHGDLKPANFLFV--QGRLRLIDFGIAR 124
                 33333788888888888899***************..89999****9886 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 3.2
                 H CS
  PF01636.18 101 l 101
                 +
  MMETSP0890-20130614|6402_1 352 A 352
                 1 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0041     110     151 ..      83     123 ..      63     139 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHCS-EEESS-STTSEEEESSSEEE---TTE CS
  PF01163.17 110 yeeileemrklykeaglvHaDLSeyNvlvdedkvviIDvsQa 151
                  +++le   + +++ ++vH+DL   N l+ ++++ +ID++ a
  MMETSP0890-20130614|6402_1  83 WQQMLE-AVRTIHDDRIVHGDLKPANFLFVQGRLRLIDFGIA 123
                 566777.5556679************************9755 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.043     122     169 ..      81     124 ..      66     139 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   PF06293.9 122 alleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                   +++  ++++ +h+  + H+dl ++n+l+ +++    + liD+  ar
  MMETSP0890-20130614|6402_1  81 LAWQQMLEAVRTIHDDRIVHGDLKPANFLFVQGR----LRLIDFGIAR 124
                 57999999***********************996....9999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:01.03
# Mc/sec: 981.81
//
Query:       MMETSP0890-20130614|6401_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-59  198.9   0.1    5.5e-59  198.5   0.1    1.1  1  PF00227.21 Proteasome subunit
    7.1e-14   50.7   0.1    1.3e-13   49.8   0.0    1.5  1  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   0.1     8e-63   5.5e-59       1     189 [.      31     219 ..      31     220 .. 0.97

  Alignments for each domain:
  == domain 1    score: 198.5 bits;  conditional E-value: 8e-63
                 HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHH....HHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
  PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytq....rsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevav 189
                 vk G+t+vGik+++gvvla++kr+t  s+ll++ +veKi ++d hig+a++Gl+aDartlv++ar+e q++r++y++p+++  l++++++l+++       ++  rpfgv+lliag+d+  gpqly+ dpsG++  +k a aiGsg e a++ l++ly++ ++l++a+ la++ lk+++e dkl+++n+++a 
  MMETSP0890-20130614|6401_1  31 VKLGSTAVGIKTSEGVVLAVEKRLT--SSLLESASVEKILEVDSHIGVAMSGLIADARTLVDHARVESQNHRFTYNEPMNTMALTQSICDLALSFGEdgddKKMSRPFGVALLIAGYDQSRGPQLYYADPSGTFALYK-AKAIGSGGEGAQSNLQELYSDSMSLKDAEVLALSTLKQVME-DKLTDDNIDLAS 219
                 789**********************..9999****************************************************************9844445689********************************8.*****************************************.9*******9985 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0     2e-17   1.3e-13       1      23 []       8      30 ..       8      30 .. 0.98

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2e-17
                T---TT--------HHHHHHHHH CS
   PF10584.4  1 YDrslTtFSPdGRLfQVEYAlkA 23
                YDr ++tFSP+GRLfQVEYA++A
  MMETSP0890-20130614|6401_1  8 YDRGVNTFSPEGRLFQVEYAIQA 30
                *********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.71
# Mc/sec: 884.29
//
Query:       MMETSP0890-20130614|6400_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-09   36.0   0.2    1.2e-08   35.2   0.2    1.3  1  PF13147.1  Amidohydrolase
      2e-06   27.6   0.0    3.2e-06   26.9   0.0    1.3  1  PF01979.15 Amidohydrolase family


Domain annotation for each model (and alignments):
>> PF13147.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.2   1.7e-12   1.2e-08     209     304 .]     360     473 ..     333     473 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.7e-12
   PF13147.1 209 gallkvlpplrlrserdqealaellaaGvpdalgsDhapdase................gpgdllhaelllaal.aglspq...ealrlatlnpArllGleddrGrlepGadAdlv 304
                 ++ +kv pp r  +e+ ++al +++++G++ +++s hap++s+                +  ++ + elll+al   l+ +   ++ rl  +npArll+l + +G +++ a Ad++
  MMETSP0890-20130614|6400_1 360 ATIFKVQPPIR--HEAHRRALVRAVRSGLVHCISSGHAPCHSAgkpcppdndgdfnralPGTGSGANELLLPALwTALHRHnltDLARLLAFNPARLLQLYPAKGCIAVRAHADFT 473
                 6789999****..**********************************************66666666666666645555535569*****************************96 PP

>> PF01979.15  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.7e-10   3.2e-06     196     333 .]     349     476 ..     295     476 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 4.7e-10
                 SSC.CCHHHHHHHHHHHHTTCE..HCHHHHHHCHHHHSCHHHHHHHHHHHH---EEEEEHHBTCHHH-TTHHHHHHHHHHHHHHHETTS--HGHHHHHHH...HHHHHHHHHTTHHHHHH---TTT-----------EEEE- CS
  PF01979.15 196 lll.knaikggvtllahclhld..deaiellkergsgvahcplsnesvlhregrksllegdaqgigelgsggarlakvaeeagvklgtDgvaeelkvalllg.lslkealrmaTinpAkalglddeiGsievGkdADlvvvd 333
                 l++ ++ ++ g t++++ ++++  ++  +l+++ +sg++hc+ s+++++h +g+ + ++ d + + +l+  g+  ++++  a              + + l+   l ++ r    npA+ l l++ +G i+v   AD++++d
  MMETSP0890-20130614|6400_1 349 LFFsEEEVPYGATIFKVQPPIRheAHRRALVRAVRSGLVHCISSGHAPCHSAGKPCPPDNDGDFNRALPGTGSGANELLLPA--------------LWTALHrHNLTDLARLLAFNPARLLQLYPAKGCIAVRAHADFTIFD 476
                 34589999**************866677788*************************99999999999999999999999883..............23344459************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       825  (0.0603423); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.39s 00:00:01.40 Elapsed: 00:00:01.14
# Mc/sec: 1314.87
//
Query:       MMETSP0890-20130614|6404_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.64
# Mc/sec: 1130.78
//
Query:       MMETSP0890-20130614|6407_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-11   41.7   0.0    1.1e-10   40.9   0.0    1.5  1  PF09360.5 Iron-binding zinc finger CDGSH type
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.029   13.9   0.0    1.2  1  PF12194.3 Protein kinase Fus3-binding
      0.095   11.7   0.0      0.095   11.7   0.0    1.1  1  PF11904.3 GPCR-chaperone


Domain annotation for each model (and alignments):
>> PF09360.5  Iron-binding zinc finger CDGSH type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.5e-14   1.1e-10       8      38 .]      72     102 ..      53     102 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 2.5e-14
   PF09360.5   8 vegeeelek.etyalCrCGkSknkPFCDGsHk 38 
                 v+++e  e+ ++ ++CrC++S+++P+CDG+H+
  MMETSP0890-20130614|6407_1  72 VTMDEL-EAgKKKVYCRCWLSGTFPLCDGTHA 102
                 333444.4459********************5 PP

>> PF12194.3  Protein kinase Fus3-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.3e-06     0.029       2      33 ..      44      75 ..      43      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.3e-06
   PF12194.3  2 tsissiLslkrekPdelllllqiDerkvkedd 33
                 si s  slk e+P++++ ++ +D +kv   d
  MMETSP0890-20130614|6407_1 44 VSIRSFASLKAENPNKINTMIDLDSAKVVTMD 75
                5899***********************97544 PP

>> PF11904.3  GPCR-chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05     0.095     165     211 ..      49      96 ..      12     116 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.1e-05
   PF11904.3 165 peavtaeeyfspev..elkkkrdigrpkeesekkkkfkatlwlsedFPL 211
                  ++++ae+ ++ ++  +l+ ++++ +  e++  kkk+ +++wls  FPL
  MMETSP0890-20130614|6407_1  49 FASLKAENPNKINTmiDLD-SAKVVTMDELEAGKKKVYCRCWLSGTFPL 96 
                 4555555444444444665.666667789999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:00.48
# Mc/sec: 609.07
//
Query:       MMETSP0890-20130614|6405_1  [L=1072]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-110  360.4   8.2    4.5e-19   68.0   0.0    6.4  6  PF00439.20 Bromodomain
  ------ inclusion threshold ------
      0.052   13.1   0.1         61    3.3   0.0    4.3  5  PF00418.14 Tau and MAP protein, tubulin-binding repeat


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   2.8e-22   1.9e-18       4      83 ..      12      94 ..       9      95 .. 0.96
   2 !   68.0   0.0   6.5e-23   4.5e-19       3      82 ..     173     255 ..     171     257 .. 0.93
   3 !   50.3   0.0   2.2e-17   1.5e-13       1      82 [.     312     391 ..     312     393 .. 0.95
   4 !   62.0   0.1   4.9e-21   3.4e-17       2      82 ..     420     501 ..     419     503 .. 0.92
   5 !   59.5   0.2   2.9e-20     2e-16       3      79 ..     561     644 ..     559     649 .. 0.82
   6 !   53.8   0.1   1.8e-18   1.2e-14       1      83 [.     674     758 ..     674     759 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 2.8e-22
  PF00439.20  4 ilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyne.egsdvyedar 83
                +l +++e+ +a +F++pv   a+ +p+Y +iik P+dL tI  kl++g+y   ++  +d++l+++Na++yn+ ++s+v++da 
  MMETSP0890-20130614|6405_1 12 LLHQMRERRCARWFLRPVdpVADGVPNYLEIIKAPMDLGTIGHKLERGAYEEREDYAEDVRLMINNALTYNPdPQSRVHKDAI 94
                5678999***********9999***********************************************************96 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 6.5e-23
  PF00439.20   3 qilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyne.egsdvyeda 82 
                 ++l++l  +++a  F +pv   a  +p+Y+dii++P+dL+tI++k++ g+y + ++f  dl+l+f+Na+++n  ++ +v +da
  MMETSP0890-20130614|6405_1 173 KLLTYLVAQPHAYHFKEPVdaVALGIPEYHDIISEPMDLTTIREKIKAGQYETNEAFVRDLRLIFDNAITFNTePKNEVRKDA 255
                 68899**************888999***********************************************97777777776 PP

  == domain 3    score: 50.3 bits;  conditional E-value: 2.2e-17
  PF00439.20   1 ceqilndlqehklastFsapvdakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdvyeda 82 
                 c+q+l+++  +++a +F+ pvd   ap+Y +i+ +P+dL t+ +kl+  +y s++++  d++lv++Na+ yn   +  +++a
  MMETSP0890-20130614|6405_1 312 CRQLLEEIAARPEAFYFLVPVDLNMAPGYLEIVRQPMDLGTVAQKLD--TYASADEMIRDTQLVIDNALLYNTDATHPVRQA 391
                 99******************************************885..799*********************999888877 PP

  == domain 4    score: 62.0 bits;  conditional E-value: 4.9e-21
  PF00439.20   2 eqilndlqehklastFsapv..dakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyne.egsdvyeda 82 
                 ++++++lq h++a  Fs pv   a  +pdY++ii+rP+d+ t+++ +   +yqs+++f++d++l+f+Na++yn+ + ++v+ +a
  MMETSP0890-20130614|6405_1 420 SNLVEQLQAHENAFFFSTPVdpIAMGCPDYFQIIQRPMDIGTLNQMIP--EYQSPEAFYNDASLIFTNAKTYNPePTHPVHIQA 501
                 7899****************9999*********************995..8***********************7777777666 PP

  == domain 5    score: 59.5 bits;  conditional E-value: 2.9e-20
  PF00439.20   3 qilndlqehk.lastFsapv..dakeapdYydiikrPidLktIqkklasgkyqs....laqfekdlelvfsNavkyneegsdvy 79 
                 ++++ + +++  ++ F +pv  ++  + dY++iik+P+d+ tIq+k+a g+y++    ++ f  d++lvf+Na++yn++   ++
  MMETSP0890-20130614|6405_1 561 KLVDLILRQPnANQFFAEPVnpENYGIRDYFEIIKKPMDFGTIQNKIAHGTYRKeekpWEHFIDDVRLVFNNARTYNKSTKHIV 644
                 6677777888344555566677788889*************************888889*******************766554 PP

  == domain 6    score: 53.8 bits;  conditional E-value: 1.8e-18
  PF00439.20   1 ceqilndlqehk.lastFsapv..dakeapdYydiikrPidLktIqkklasgkyqsl.aqfekdlelvfsNavkyneegsdvyedar 83 
                 ++qil+ l+++  la  F++pv  ++  + dY++iik+P+dL tI++k+a+  y+sl  +f  d++lvf+Na++yn++    + da+
  MMETSP0890-20130614|6405_1 674 MRQILSALKSRTdLAFFFLEPVdpQKLGLHDYHEIIKEPMDLGTIESKIAQ--YKSLeSDFAYDVRLVFNNAITYNKNPKLAVHDAA 758
                 6899**99999989********8888899********************86..666548******************7777666665 PP

>> PF00418.14  Tau and MAP protein, tubulin-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.4   9.5e+03       1      10 [.      40      49 ..      40      49 .. 0.88
   2 ?   -0.2   0.0      0.11   7.4e+02       3      17 ..     204     218 ..     203     218 .. 0.83
   3 ?   -0.6   0.0      0.15     1e+03       1      13 [.     341     353 ..     341     356 .. 0.82
   4 ?    2.8   0.0     0.013        87       2      17 ..     592     607 ..     591     607 .. 0.91
   5 ?    3.3   0.0     0.009        61       2      17 ..     707     722 ..     707     722 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.4
  PF00418.14  1 VqivskklDl 10
                ++i+  ++Dl
  MMETSP0890-20130614|6405_1 40 LEIIKAPMDL 49
                58999****8 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.11
  PF00418.14   3 ivskklDlkkVqSKi 17 
                 i+s+++Dl  ++ Ki
  MMETSP0890-20130614|6405_1 204 IISEPMDLTTIREKI 218
                 89******8887665 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.15
  PF00418.14   1 VqivskklDlkkV 13 
                 ++iv +++Dl  V
  MMETSP0890-20130614|6405_1 341 LEIVRQPMDLGTV 353
                 689******9665 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.013
  PF00418.14   2 qivskklDlkkVqSKi 17 
                 +i+ k++D+  +q Ki
  MMETSP0890-20130614|6405_1 592 EIIKKPMDFGTIQNKI 607
                 699*******999997 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.009
  PF00418.14   2 qivskklDlkkVqSKi 17 
                 +i+ +++Dl  + SKi
  MMETSP0890-20130614|6405_1 707 EIIKEPMDLGTIESKI 722
                 5899***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1072 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2066  (0.151112); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.00u 0.39s 00:00:02.39 Elapsed: 00:00:01.75
# Mc/sec: 1467.94
//
Query:       MMETSP0890-20130614|6406_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-87  292.3   0.0    4.6e-86  288.8   0.0    2.0  1  PF06862.7 Protein of unknown function (DUF1253)


Domain annotation for each model (and alignments):
>> PF06862.7  Protein of unknown function (DUF1253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8   0.0   3.4e-90   4.6e-86       2     431 ..     293     761 ..     292     774 .. 0.90

  Alignments for each domain:
  == domain 1    score: 288.8 bits;  conditional E-value: 3.4e-90
   PF06862.7   2 trkrvlknneklekeqeaekekveedeelrdqgftrpkvLillpfrniakevvdlliklleaekqvenkkrFeeefdlteeekkeeeekalkkkkpedyralFkG..nndDeFrlGikl...tkkkikly............skfyssDiiiaSPLGlrliieeeekkkrdydflSSiEvlivdqadiilmQNwehlkevlkalnklpkkshd..adisRvrkwvldgqaknyRQtiilssietpeinslfnsklaNlrgkvklkkkekk...............................igvlekvvlkvrqvFerieaesilkeedarlkfFtknvlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefpefYseli.kllakskk.........eeaeeaeasvivlyskydaleLerivGterakk 431
                 +rk vlk+ +kl+k++ +     +  e++rdqg +rp+vLil p+r  a++v++l++k+l+a+  ++n+ + e  f        + e++++++k p+d++++F    n dD F lGi l    +++ k y            +++  sDiiiaS   lr  +e+    + + d  SS+E++++d adi+l+QNw+ +  vl+aln++p+       di+R+r   l++qak+ RQtiils++ ++++++ + +  +  + +  l   +++                               ++++++++ k r +F+r++++++++++da+l++F  ++ +kl+      ++lif  +Y d++  r  l+++ + F++i+ey+  ++israr+ F++gr ++LL+++R+hfy+R +i+g+++ if+s+P+ p f+ el+ ++++k ++            e+++  +++lys++dal++eri G++rak 
  MMETSP0890-20130614|6406_1 293 SRKAVLKHDAKLRKKDIT-----TALEQPRDQGISRPRVLILSPLRGHALDVISLILKILNARAIIKNRPQVELAFA-------SLEQETNSQKGPRDWEEVFGQgrNIDDDFELGITLtpgLRRSSKNYldktsligvtldTPLARSDIIIASAAKLRARLES----DGSLDEFSSLEICVLDAADIMLYQNWDFVLAVLNALNRRPRLELPptLDIRRIRLPELENQAKYCRQTIILSTFADARLRAAIDAPGRDPSARELLLLDKDDpiadtaslfarnragavrfsplpvseqdsalTIAMNQIQAKCRFIFTRLSGSTPAAASDAKLNYFKIHLASKLK-----PRTLIFANTYHDFLACRAALRSAAVDFVSIHEYSRGSEISRARSNFFHGRVSVLLYSGRAHFYQRLRIRGATTTIFVSPPDLPVFFPELVaRMFEKAAArenekeenhGLHENSQYAALILYSRFDALAMERILGADRAKS 761
                 688899999999976332.....23469************************************************5.......55555566789********643599**********66645666666799999999999*********************6....7889999*********************************97543349*************************************88888877777766666899**************************99999************************************9999.....9*****************************************************************************************67777766688888766555667788899******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       754  (0.0551492); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.20u 0.44s 00:00:01.64 Elapsed: 00:00:00.95
# Mc/sec: 1992.76
//
Query:       MMETSP0890-20130614|6409_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.9    6.3  10.0       0.42    9.4   0.5    2.2  2  PF09073.5 BUD22


Domain annotation for each model (and alignments):
>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.9      0.01   1.4e+02     217     281 ..     121     203 ..      80     224 .. 0.71
   2 ?    9.4   0.5   3.1e-05      0.42     231     278 ..     356     408 ..     320     410 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.01
   PF09073.5 217 deesgeeq......desddeeesesesesdeedeedsdsrsvsdseese.ppskkaKkkka..........ktsstfLPsL.m 281
                 d++ + ++      +e dd  + ++++   +++e +s ++  + ++ se pp+k   + k+           ++++ LP L  
  MMETSP0890-20130614|6409_1 121 DDSTDVSAaravpqKEIDDATDVSEAPRHHQASEVSSPKPIDDATDISEiPPPKVLLQGKStsnsetpislHSNDVTLPHLsQ 203
                 33333333677886555555555555666666666666666666666666888877666666679999999999999999944 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 3.1e-05
   PF09073.5 231 eesesesesdeedeedsdsrsvsdseeseppskkaKkkka.....ktsstfLP 278
                 e+s+  ++  ++d++dsd+ svsd++++ pp+  +K++++     k++ + LP
  MMETSP0890-20130614|6409_1 356 EDSQMIPHLPQDDDNDSDKTSVSDMPKKNPPKPPQKNQENtrvalKQTLIHLP 408
                 566667788999*******************9999999977777666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 1517.69
//
Query:       MMETSP0890-20130614|6411_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-08   31.5   4.5    1.7e-05   23.5   1.0    2.2  2  PF05686.7 Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0     4e-05      0.55     136     172 ..      92     129 ..      82     138 .. 0.80
   2 !   23.5   1.0   1.2e-09   1.7e-05     185     321 ..     188     325 ..     169     352 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 4e-05
   PF05686.7 136 ikrwslllk.elkegnkkvkweerepyaywkGnpsvae 172
                 +  w+ l +  l++++++ +we+r+p   w+G  ++++
  MMETSP0890-20130614|6411_1  92 LTVWNELNQfLLARAKREHPWENRDPRCIWRGTVNSKT 129
                 5567666551467889999*************988776 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.2e-09
   PF05686.7 185 kelvdarltkqdekkeskegv..kessledqckhkYkiy...ieGvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYak 321
                  + +++++++  +++++++++  +  s+ +  k+++ ++   ++G ++s  +  i   +s++ l ++ + ++++  L   +  + +    +++++ + +++ +++++k +++ +++++  +e L+ +++  Ym+++l+  ++
  MMETSP0890-20130614|6411_1 188 DSGMKTAYYNIIKNNAKRSQFfaHYLSFLNYTKYQFILNlpgVQGGSYSRNLNKIWNMNSVIALWNSLHVEWYYPALRHGHTHIGV----DCHNIIKELEYFKSDPRKLNRLRQTAQRVYNEFLSAESIALYMIQVLNALSQ 325
                 555677888876665555554115567778888888888333355567777899************************99999887....689999999**************************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.81
# Mc/sec: 1260.31
//
Query:       MMETSP0890-20130614|6414_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.2   0.2      2e-08   33.9   0.0    5.4  5  PF13041.1  PPR repeat family
    2.6e-10   39.6   0.3       0.12   12.6   0.0    5.6  6  PF13812.1  Pentatricopeptide repeat domain
    3.5e-09   35.9   0.1       0.48   10.4   0.0    6.0  7  PF01535.15 PPR repeat
    1.1e-07   31.0   1.0       0.31   10.4   0.0    5.4  5  PF12854.2  PPR repeat
  ------ inclusion threshold ------
      0.015   15.0   0.3      0.023   14.4   0.2    1.3  1  PF11846.3  Domain of unknown function (DUF3366)
      0.024   15.1   1.1         23    5.8   0.0    4.6  5  PF13428.1  Tetratricopeptide repeat
      0.031   13.5   0.0       0.81    9.0   0.0    2.3  2  PF00190.17 Cupin
      0.079   13.5   0.2         12    6.5   0.0    3.2  3  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01        18      13      30 ..       2      19 ..       1      26 [. 0.90
   2 ?    0.8   0.0      0.26   4.4e+02      15      46 ..      46      77 ..      45      80 .. 0.84
   3 !    6.2   0.0    0.0053       9.1      12      36 ..     117     141 ..     113     148 .. 0.82
   4 !   15.6   0.1   5.9e-06      0.01       6      48 ..     146     188 ..     142     190 .. 0.93
   5 !   33.9   0.0   1.2e-11     2e-08       1      46 [.     176     220 ..     176     221 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.01
   PF13041.1 13 lckkgkveeAfklfneMk 30
                l ++g+++ A++l+n+M 
  MMETSP0890-20130614|6414_1  2 LIHNGNLQRAIQLLNQMT 19
                6789*************5 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.26
   PF13041.1 15 kkgkveeAfklfneMkkrgikPnvyTYsilik 46
                ++  ++  ++l +e  +rg   + + ++  i+
  MMETSP0890-20130614|6414_1 46 QNQAWNTVLDLTDEIIQRGFVLDHVCFTAAID 77
                56678889999999999999999999999887 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0053
   PF13041.1  12 glckkgkveeAfklfneMkkrgikP 36 
                 +l + g  + A++lf++ k+r+i+ 
  MMETSP0890-20130614|6414_1 117 SLRRVGSSDLALRLFEDAKQRNIQL 141
                 566778899*************985 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 5.9e-06
   PF13041.1   6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 Y + + ++ + +++++ ++++ne ++++i P++++Y+  + ++
  MMETSP0890-20130614|6414_1 146 YGAAMWAYSSSKNLNKVLDILNESRQNNIMPTTVSYNAALAAC 188
                 7788999******************************999987 PP

  == domain 5    score: 33.9 bits;  conditional E-value: 1.2e-11
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilik 46 
                 p +v+YN+ + + c ++++  A++l++eM++ +++Pn+ T+ ili+
  MMETSP0890-20130614|6414_1 176 PTTVSYNAALAA-CGNDQLTHAMQLYEEMQRVKVEPNANTFGILIS 220
                 789*******87.779****************************97 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.019        32      13      28 ..       4      19 ..       1      24 [. 0.90
   2 ?   -3.6   0.0         8   1.4e+04       4      23 ..      50      56 ..      47      65 .. 0.54
   3 ?    5.4   0.0     0.014        24       7      33 ..     114     140 ..     111     141 .. 0.87
   4 !   12.6   0.0   6.7e-05      0.12       3      34 .]     145     176 ..     144     176 .. 0.95
   5 !    9.3   0.0   0.00078       1.3       3      34 .]     180     210 ..     178     210 .. 0.70
   6 ?   -2.4   0.0       4.5   7.7e+03       3      23 ..     214     234 ..     213     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.019
   PF13812.1 13 ksgrpeaAlalleeMe 28
                ++g+ ++A +ll++M+
  MMETSP0890-20130614|6414_1  4 HNGNLQRAIQLLNQMT 19
                78*************6 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 8
   PF13812.1  4 yntlitalaksgrpeaAlal 23
                +nt             +l+l
  MMETSP0890-20130614|6414_1 50 WNT-------------VLDL 56
                444.............4455 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.014
   PF13812.1   7 litalaksgrpeaAlalleeMeqqgvk 33 
                 ++  l + g+ ++Al+l+e+ +q++++
  MMETSP0890-20130614|6414_1 114 VMGSLRRVGSSDLALRLFEDAKQRNIQ 140
                 56678899***********99999875 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 6.7e-05
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 +y + ++a+++s + +++l++l+e +q+++ P
  MMETSP0890-20130614|6414_1 145 LYGAAMWAYSSSKNLNKVLDILNESRQNNIMP 176
                 58999*************************98 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.00078
   PF13812.1   3 tyntlitalaksgrpea..AlalleeMeqqgvkP 34 
                 +yn+ +   a +g+ ++  A++l+eeM++ +v+P
  MMETSP0890-20130614|6414_1 180 SYNAAL---AACGNDQLthAMQLYEEMQRVKVEP 210
                 555555...55566666556*******9988887 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 4.5
   PF13812.1   3 tyntlitalaksgrpeaAlal 23 
                 t+ +li    ++g+ ++A al
  MMETSP0890-20130614|6414_1 214 TFGILISLQEENGNLQQANAL 234
                 677888888899999998776 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.012        20      11      26 ..       3      18 ..       1      21 [. 0.90
   2 ?   -2.4   0.0       3.3   5.7e+03       4      29 ..      51      63 ..      49      65 .. 0.50
   3 ?    4.0   0.0     0.029        50       7      31 .]     115     139 ..     114     139 .. 0.86
   4 !    7.5   0.0    0.0023         4       3      31 .]     146     174 ..     144     174 .. 0.90
   5 !   10.4   0.0   0.00028      0.48       1      28 [.     179     205 ..     179     208 .. 0.90
   6 ?   -0.5   0.0      0.82   1.4e+03       2      24 ..     214     236 ..     214     243 .. 0.79
   7 ?   -1.0   0.0       1.2   2.1e+03       9      25 ..     332     348 ..     330     348 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
  PF01535.15 11 ckaGkleeAlelfkeM 26
                 ++G+l+ A++l+++M
  MMETSP0890-20130614|6414_1  3 IHNGNLQRAIQLLNQM 18
                579************* PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.3
  PF01535.15  4 nslIsgyckaGkleeAlelfkeMkek 29
                n++             l+l +e++++
  MMETSP0890-20130614|6414_1 51 NTV-------------LDLTDEIIQR 63
                444.............4555555555 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.029
  PF01535.15   7 IsgyckaGkleeAlelfkeMkekGv 31 
                 + ++ + G  + Al+lf++ k++++
  MMETSP0890-20130614|6414_1 115 MGSLRRVGSSDLALRLFEDAKQRNI 139
                 667889999*********9999876 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0023
  PF01535.15   3 ynslIsgyckaGkleeAlelfkeMkekGv 31 
                 y + + +y+++++l ++l++++e +++++
  MMETSP0890-20130614|6414_1 146 YGAAMWAYSSSKNLNKVLDILNESRQNNI 174
                 888899*****************988875 PP

  == domain 5    score: 10.4 bits;  conditional E-value: 0.00028
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMke 28 
                 v+yn+ + + c + +l  A++l++eM++
  MMETSP0890-20130614|6414_1 179 VSYNAALAA-CGNDQLTHAMQLYEEMQR 205
                 789999999.99**************98 PP

  == domain 6    score: -0.5 bits;  conditional E-value: 0.82
  PF01535.15   2 tynslIsgyckaGkleeAlelfk 24 
                 t+ +lIs    +G+l+ A  l+ 
  MMETSP0890-20130614|6414_1 214 TFGILISLQEENGNLQQANALMV 236
                 78999999999999999987765 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 1.2
  PF01535.15   9 gyckaGkleeAlelfke 25 
                 g  + ++l++A+ lf e
  MMETSP0890-20130614|6414_1 332 GNFRIRLLSDAENLFIE 348
                 667788999*****976 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00018      0.31      20      34 .]       5      19 ..       4      19 .. 0.94
   2 ?    1.1   0.0      0.14   2.4e+02       1      16 [.      63      78 ..      63      79 .. 0.89
   3 ?   -2.5   0.0       1.9   3.2e+03      21      32 ..     122     133 ..     120     134 .. 0.76
   4 !    5.4   0.4    0.0064        11       2      34 .]     173     204 ..     172     204 .. 0.83
   5 !    6.7   0.0    0.0026       4.5       3      26 ..     208     231 ..     207     238 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
   PF12854.2 20 aGrvdeAvelldeMe 34
                +G++ +A++ll++M+
  MMETSP0890-20130614|6414_1  5 NGNLQRAIQLLNQMT 19
                8*************5 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.14
   PF12854.2  1 kGlkPdvvTYNtLIdG 16
                +G++ d v+++  Id+
  MMETSP0890-20130614|6414_1 63 RGFVLDHVCFTAAIDS 78
                699********98886 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.9
   PF12854.2  21 GrvdeAvellde 32 
                 G  d A++l+++
  MMETSP0890-20130614|6414_1 122 GSSDLALRLFED 133
                 556789****85 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0064
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                 ++ P++v+YN  + + C +  +  A++l +eM+
  MMETSP0890-20130614|6414_1 173 NIMPTTVSYNAALAA-CGNDQLTHAMQLYEEMQ 204
                 578999999998865.89999999999999995 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0026
   PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeA 26 
                 ++P++ T+ +LI+    +G++ +A
  MMETSP0890-20130614|6414_1 208 VEPNANTFGILISLQEENGNLQQA 231
                 79**********966666666655 PP

>> PF11846.3  Domain of unknown function (DUF3366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.4e-05     0.023     116     175 ..     187     243 ..     146     275 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
   PF11846.3 116 llgitpenpellaayleqalkllrdkPrpavirrlalalallGkeeeArdamaeaaalyp 175
                   g  + + ++++  + q +k+    P +++   l++++  +G+ ++A+++m +a+ +  
  MMETSP0890-20130614|6414_1 187 ACGNDQLTHAMQLYEEMQRVKVE---PNANTFGILISLQEENGNLQQANALMVQARGYGL 243
                 23334445555555566777777...*****************************98754 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.013        23      11      27 ..       2      18 ..       1      26 [. 0.90
   2 ?    1.7   0.1      0.28   4.9e+02      10      30 ..     117     137 ..     109     153 .. 0.82
   3 ?    1.2   0.0       0.4   6.9e+02       6      42 ..     148     186 ..     142     200 .. 0.58
   4 ?    0.3   0.0       0.8   1.4e+03      25      40 ..     182     197 ..     177     207 .. 0.57
   5 ?   -0.6   0.0       1.6   2.7e+03       6      22 ..     217     233 ..     212     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.013
   PF13428.1 11 llalGdpdeAiallrra 27
                l+++G++++Ai+ll+++
  MMETSP0890-20130614|6414_1  2 LIHNGNLQRAIQLLNQM 18
                6899**********986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.28
   PF13428.1  10 allalGdpdeAiallrralal 30 
                  l++ G  d A++l+++a ++
  MMETSP0890-20130614|6414_1 117 SLRRVGSSDLALRLFEDAKQR 137
                 68899999********99654 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.4
   PF13428.1   6 alarallalGdpdeAiallrralala..PddaealllLa 42 
                 a  +a+  + ++ + ++ l++  + +  P+   +  +La
  MMETSP0890-20130614|6414_1 148 AAMWAYSSSKNLNKVLDILNESRQNNimPTTVSYNAALA 186
                 555666667777777766666554433344444444444 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.8
   PF13428.1  25 rralalaPddaealll 40 
                 ++ala++ +d   + +
  MMETSP0890-20130614|6414_1 182 NAALAACGNDQLTHAM 197
                 5555555555443332 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 1.6
   PF13428.1   6 alarallalGdpdeAia 22 
                  l  +++++G++++A a
  MMETSP0890-20130614|6414_1 217 ILISLQEENGNLQQANA 233
                 578899999**999965 PP

>> PF00190.17  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.058     1e+02      99     136 ..     147     184 ..     144     192 .. 0.87
   2 ?    9.0   0.0   0.00048      0.81      26      76 ..     265     313 ..     253     363 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.058
                 T-EEEEEEESSSSEEEEEEEESSSCT.ESCHHHHHHHC CS
  PF00190.17  99 gvahwlyndgdnelvavvlfdtnnpqnqldrevlaraf 136
                 g a+w y++++n +  + +++ + ++n+++++v ++a 
  MMETSP0890-20130614|6414_1 147 GAAMWAYSSSKNLNKVLDILNESRQNNIMPTTVSYNAA 184
                 899******9999999999999999999***9999875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00048
                 TCTHCCTEEEEEEEEE-TTEEEEEEEESSEEEEEEEE-EEEEEEEES.... CS
  PF00190.17  26 pgllqcagvaarrvliepgglllPhysnapeilyvlqGrgrlgvvvpgcpe 76 
                  + l++a  +a+ ++ e+  l +P+ ++ p +l++  Grgrl++vvp+  e
  MMETSP0890-20130614|6414_1 265 RTALRLALQVASQHI-EKSHLKVPNKHQEP-LLIINGGRGRLQQVVPSMFE 313
                 456788888888777.99999999999855.7789************9865 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16   2.7e+02       8      24 ..       3      19 ..       1      30 [. 0.73
   2 ?    6.5   0.0    0.0073        12       7      43 ..     118     154 ..     116     171 .. 0.84
   3 ?    0.1   0.1      0.74   1.3e+03       4      51 ..     184     232 ..     181     241 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.16
   PF13432.1  8 lraGdydeAlaaleaal 24
                + +G++++A+++l++  
  MMETSP0890-20130614|6414_1  3 IHNGNLQRAIQLLNQMT 19
                55788888888888755 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0073
   PF13432.1   7 llraGdydeAlaaleaalalaPeaaeallllaeallr 43 
                 l r G  d Al+++e+a  ++ +  + l++ a+ ++ 
  MMETSP0890-20130614|6414_1 118 LRRVGSSDLALRLFEDAKQRNIQLKDTLYGAAMWAYS 154
                 66789999*************99**********9994 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.74
   PF13432.1   4 ArallraGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAa 51 
                 A+a+  + ++  A +++e+  +    P +a+ +  l  +  + g+l++A 
  MMETSP0890-20130614|6414_1 184 ALAACGNDQLTHAMQLYEEMQRVKveP-NANTFGILISLQEENGNLQQAN 232
                 555555555555666666666666556.7777777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.79
# Mc/sec: 1146.61
//
Query:       MMETSP0890-20130614|6417_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.3   7.0       0.13   12.0   4.9    1.1  1  PF07133.6 Merozoite surface protein (SPAM)
       0.49   10.0   4.7       0.59    9.8   3.2    1.2  1  PF11671.3 Complementary sex determiner protein
       0.98    7.2   4.5        1.1    7.1   3.1    1.0  1  PF02724.9 CDC45-like protein


Domain annotation for each model (and alignments):
>> PF07133.6  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.9   2.8e-05      0.13      69     116 ..       4      49 ..       1      60 [. 0.68

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.8e-05
   PF07133.6  69 eedeeEivEeeeeEeekkeeeekkeekdeekkqsneisneeikldskk 116
                 eed  E+vE+ee+ e k+e ee++e+ ++   ++n++++e+ + +s++
  MMETSP0890-20130614|6417_1   4 EEDRFESVEDEEQKESKEEREEREER-KT-NTSTNDVFEERSRRSSPS 49 
                 45666888888888854444443333.33.356799***999999876 PP

>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2   0.00013      0.59       5      52 ..       7      54 ..       3      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00013
   PF11671.3  5 rysrsrereqksyknensyreyretsrersrdrkerersrekkiissl 52
                r+    + eqk  k+e++ re r+t   +    +er r     ii+++
  MMETSP0890-20130614|6417_1  7 RFESVEDEEQKESKEEREEREERKTNTSTNDVFEERSRRSSPSIITTV 54
                566667889****************99998888999999999999875 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.1   0.00023       1.1     140     187 ..       5      66 ..       1      86 [. 0.45

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00023
   PF02724.9 140 dseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl................a 187
                 ++  +++e+e+++++k++ e++e+++ +++++d  ee+ +rs+   +                +
  MMETSP0890-20130614|6417_1   5 EDRFESVEDEEQKESKEEREEREERKTNTSTNDVFEERSRRSSP--SiittvalgtydgiideQ 66 
                 22223333333333333344444444444444444444444333..135677777777665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1024  (0.0748976); expected 273.4 (0.02)
Passed bias filter:                      716  (0.0523698); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.47s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 417.03
//
Query:       MMETSP0890-20130614|6422_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 350.77
//
Query:       MMETSP0890-20130614|6429_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00086   18.9   0.0     0.0011   18.5   0.0    1.2  1  PF01979.15 Amidohydrolase family
     0.0045   16.9   0.1     0.0067   16.4   0.1    1.2  1  PF13147.1  Amidohydrolase
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.037   14.3   0.0    1.5  1  PF09278.6  MerR, DNA binding


Domain annotation for each model (and alignments):
>> PF01979.15  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.5e-07    0.0011     300     333 .]      31      62 ..       7      62 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.5e-07
                 HHHHTTHHHHHH---TTT-----------EEEE- CS
  PF01979.15 300 alrmaTinpAkalglddeiGsievGkdADlvvvd 333
                 al+ a  n+ kalg+  ++G+i +G +AD+ ++d
  MMETSP0890-20130614|6429_1  31 ALQLAARNGYKALGI--NAGAILPGMEADFALWD 62 
                 899************..99**************8 PP

>> PF13147.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.5e-06    0.0067     256     303 ..      12      58 ..       9      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.5e-06
   PF13147.1 256 llhaelllaalaglsp.qealrlatlnpArllGleddrGrlepGadAdl 303
                 +l+ ++   ++ + sp q al+la  n++++lG   ++G+++pG +Ad+
  MMETSP0890-20130614|6429_1  12 FLPTLHSPDYRDWPSPrQIALQLAARNGYKALG--INAGAILPGMEADF 58 
                 6777777788888888899**************..9************9 PP

>> PF09278.6  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.2e-06     0.037       4      28 ..      98     123 ..      95     135 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.2e-06
                 HHHHHHHHH----CCCHHHHH.HHHH CS
   PF09278.6   4 LafIrrarrlGFsLdEIrelL.alyd 28 
                 ++++ +++ lGF+L+E r+ L + y+
  MMETSP0890-20130614|6429_1  98 IQVVDKGQPLGFTLAELRSSLlHAYA 123
                 678899************98854444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:01.01
# Mc/sec: 427.07
//
Query:       MMETSP0890-20130614|6432_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-40  137.0   0.0      7e-40  136.1   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      3e-06   27.2   0.1    0.00047   20.1   0.1    2.4  1  PF13401.1  AAA domain
    2.9e-05   23.6   0.1    0.00016   21.2   0.1    2.2  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00012   21.8   0.0    0.00029   20.6   0.0    1.6  1  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00013   20.9   0.0     0.0002   20.2   0.0    1.3  1  PF05673.8  Protein of unknown function (DUF815)
    0.00095   19.4   0.0     0.0017   18.6   0.0    1.5  1  PF13191.1  AAA ATPase domain
      0.001   18.0   0.0     0.0018   17.2   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0011   18.0   0.1       0.18   10.7   0.1    2.3  2  PF06745.8  KaiC
     0.0028   18.2   0.1     0.0093   16.6   0.0    2.0  1  PF13207.1  AAA domain
     0.0037   17.0   0.0      0.007   16.1   0.0    1.5  1  PF13173.1  AAA domain
      0.004   15.9   0.1      0.075   11.7   0.0    2.1  2  PF00931.17 NB-ARC domain
      0.005   16.3   0.0      0.013   14.9   0.0    1.7  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0061   16.3   0.0      0.012   15.3   0.0    1.5  1  PF13671.1  AAA domain
      0.009   15.6   0.5      0.018   14.6   0.4    1.4  1  PF13245.1  Part of AAA domain
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.019   14.2   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
      0.014   15.5   0.2      0.044   13.9   0.0    2.0  1  PF13238.1  AAA domain
      0.025   14.4   0.3      0.052   13.3   0.0    1.7  1  PF13521.1  AAA domain
      0.041   13.7   1.5      0.041   13.7   1.1    2.7  2  PF10197.4  N-terminal domain of CBF1 interacting co-repressor CIR
      0.051   12.5   0.0      0.087   11.8   0.0    1.3  1  PF06414.7  Zeta toxin
      0.067   11.7   0.0       0.11   11.0   0.0    1.3  1  PF06068.8  TIP49 C-terminus
      0.085   11.7   0.2       0.13   11.1   0.1    1.3  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.087   11.8   0.0       0.18   10.8   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
        0.1   12.7   0.0       0.22   11.6   0.0    1.6  1  PF00910.17 RNA helicase
       0.14   11.6   0.0       0.28   10.6   0.0    1.4  1  PF13604.1  AAA domain
       0.15   11.3   1.0          2    7.6   0.2    2.2  2  PF13481.1  AAA domain
       0.15   11.1   0.3        0.4    9.7   0.1    1.7  2  PF02562.11 PhoH-like protein
       0.16   11.4   0.2       0.36   10.2   0.1    1.5  1  PF13479.1  AAA domain
       0.17   11.3   0.5       0.42   10.0   0.1    1.8  2  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.0   1.4e-42     7e-40       1     132 []     232     365 ..     232     365 .. 0.96

  Alignments for each domain:
  == domain 1    score: 136.1 bits;  conditional E-value: 1.4e-42
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 v+lyG pGtGKTllakava++++++fl++ gsel++ky+g+++k +relf+ a   + psi+fiDEida++++r   s++ ++e +r++ +Ll++ldg++++ ++v vi+atn++++ldpal+r gR+drkie++l
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS-PSIVFIDEIDAVGSKRydsSSGGTREIQRTMLELLNQLDGFDER-GDVKVIMATNKIESLDPALIRpGRIDRKIEFPL 365
                 79******************************************************9.****************99777789999999*************7.66****************************985 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   9.5e-07   0.00047       7     106 ..     232     322 ..     227     347 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.5e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL........s.......eealee 106
                 ++++G +G+GKT+l++ +a+q                       + ++l+ + s+l ++  g  +  +l++ l +++++ +  ++ iDE++ +        s        ++le+
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQT----------------------SATFLRVVGSELIQKYLG--DGPKLVRELFRVADDLSPSIVFIDEIDAVgskrydssSggtreiqRTMLEL 322
                 79******************95......................333344444444433333..444456666666666666666666666665554444314444444444444 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   3.4e-07   0.00016       1     136 [.     231     352 ..     231     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.4e-07
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EE.E---.......-EEEEE-SS--.-TT-TTHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelv.kaknddlleknfrviatanpldrslnelspalr 136
                 +v+L G pGtgK+ la+ +a  + ++++ v +++      l++++   +++ +lv   l r a   +++i+++DE++ + s+  +s      e ++++ e+ ++  ++++    + ++ vi+++n+ +    +l+pal+
  MMETSP0890-20130614|6432_1 231 GVILYGVPGTGKTLLAKAVANQTSATFLRVVGSE------LIQKYL--GDGPKLVRE-LFRVADdlSPSIVFIDEIDAVGSKRYDSSSGGTREIQRTMLELLNQLdGFDE----RGDVKVIMATNKIE----SLDPALI 352
                 59****************************9987......999998..444444443.44344457*************9999999999988887777666555404444....34899999999999....8888886 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.9e-07   0.00029       7     105 ..     233     325 ..     228     343 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.9e-07
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                 +l g  g+Gkt+laka+a+  ++    ++ r+  sel++    + l +  +  ++    a++    iv++DEid + +k+  ++     ++qr +L +l +
  MMETSP0890-20130614|6432_1 233 ILYGVPGTGKTLLAKAVANQTSA----TFLRVVGSELIQ----KYLGDGPKLVRELFRVADDLSpsIVFIDEIDAVGSKRYDSSSGGTREIQRTMLELLNQ 325
                 4568889************9996....9**********9....77777777777766666666677************877777777889*******9976 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.2e-07    0.0002      51     115 ..     227     296 ..     177     305 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.2e-07
   PF05673.8  51 lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkdlpkivellrerp...erfilfvDD 115
                 +p + v+L+G  GtGK  l ka+ n+++++ Lr++  e+ ++ l d pk+v++l +++      i+f+D 
  MMETSP0890-20130614|6432_1 227 KPPKGVILYGVPGTGKTLLAKAVANQTSATFLRVVgsELIQKYLGDGPKLVRELFRVAddlSPSIVFIDE 296
                 567889*****************************8889999********99876554111567999997 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.5e-06    0.0017      14      65 ..     219     271 ..     198     328 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.5e-06
   PF13191.1  14 aalrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                 +++++v    p  ++++G +G+GK+ L++++a +  +  lr+ ++   q +  
  MMETSP0890-20130614|6432_1 219 ELYEEVGIKPPkGVILYGVPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 271
                 5566666667799*****************88887777777777666666655 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.6e-06    0.0018      52     111 ..     231     298 ..     205     304 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.6e-06
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgve.lkvtsgPvleka.gdlaalltnl...eek...dvlfideih 111
                  v+lyG PG Gkt lak +a++  ++ l+v  + +++k  gd   l+ +l   +++    ++fidei 
  MMETSP0890-20130614|6432_1 231 GVILYGVPGTGKTLLAKAVANQTSATfLRVVGSELIQKYlGDGPKLVRELfrvADDlspSIVFIDEID 298
                 599*******************9987257777777887435544444444111221222689999996 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00037      0.18      14      37 ..     224     247 ..     195     257 .. 0.79
   2 ?    5.3   0.0     0.017       8.3     100     149 ..     273     326 ..     248     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00037
   PF06745.8  14 gGipegrvvlitGepGtGKtifal 37 
                  Gi   + v ++G+pGtGKt++a+
  MMETSP0890-20130614|6432_1 224 VGIKPPKGVILYGVPGTGKTLLAK 247
                 6888888899************97 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.017
   PF06745.8 100 leelieklaeaikeikakrvviDsitgl....yeekeavaReilrqlvrvlkkl 149
                   +l+++l ++ +++  + v iD i+++    y +++  +Rei r++++ l++l
  MMETSP0890-20130614|6432_1 273 GPKLVRELFRVADDLSPSIVFIDEIDAVgskrYDSSSGGTREIQRTMLELLNQL 326
                 568999*********************998888888999******999999886 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-05    0.0093       2      27 ..     232     257 ..     232     375 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.9e-05
                 E--B--TT---HHHHHHHHHHSTEEE CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv 27 
                 ++++G pG+GK+ lak++a++     
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTSATF 257
                 799****************9976443 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05     0.007       3      74 ..     230     313 ..     228     360 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.4e-05
   PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrklad.pe.llelfleklke.kkkylflDEiqev............p 74 
                 k ++++G+ ++GKt l+k +a++      +l +   +   + l d p+ + elf+    +   +++f+DEi  v            +
  MMETSP0890-20130614|6432_1 230 KGVILYGVPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGDgPKlVRELFRVA-DDlSPSIVFIDEIDAVgskrydsssggtR 313
                 5689****************98877..777777666644433334243333444433.2368899******9985555555555551 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.17        81     178     206 ..      98     126 ..      63     134 .. 0.66
   2 !   11.7   0.0   0.00015     0.075      21      44 ..     231     254 ..     219     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.17
                 ....HHHHHHHHHHT---HHHH.....HH CS
  PF00931.17 178 dseleevakeivekckGlPLalkvlggll 206
                 +++  +  +e +e+ +GlPLa+ +l +++
  MMETSP0890-20130614|6432_1  98 HEQKDKEEREKMEELRGLPLAVGSLEEMI 126
                 344444456778999*******9998887 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00015
                 EEEEE-------HHHHHHHTS-SS CS
  PF00931.17  21 vvglvGmgGvGKttlakqvykdes 44 
                  v l+G +G GKt lak+v ++ s
  MMETSP0890-20130614|6432_1 231 GVILYGVPGTGKTLLAKAVANQTS 254
                 588*****************9865 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05     0.013       2      30 ..     232     260 ..     231     268 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                 v+l gvPG++ktll+ka+a++ +++f r+
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTSATFLRV 260
                 7899**********************998 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.5e-05     0.012       2      29 ..     232     259 ..     232     289 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.5e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrls 29 
                 v+l G+pG+GK+ la+++++++ +++l+
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTSATFLR 259
                 7999***************999865554 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.4   3.7e-05     0.018      12      32 ..     231     250 ..     224     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-05
   PF13245.1  12 llvvtGgPGtGKTttlaaiia 32 
                  +++ G PGtGKT +la+++a
  MMETSP0890-20130614|6432_1 231 GVILYGVPGTGKT-LLAKAVA 250
                 46779********.7777766 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.9e-05     0.019      48      72 ..     230     254 ..     219     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.9e-05
  PF01695.12  48 enlvllGpsGvGKthlAialgveav 72 
                 + ++l G +G+GKt lA a++ +  
  MMETSP0890-20130614|6432_1 230 KGVILYGVPGTGKTLLAKAVANQTS 254
                 789***************9998865 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     9e-05     0.044       1      23 [.     232     262 ..     232     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9e-05
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl........g 23 
                 +++ G+pG+GKt lak+ a+ +        g
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTsatflrvvG 262
                 7999**************9987666653331 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00011     0.052       2      38 ..     232     269 ..     231     287 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00011
   PF13521.1   2 ivitGgpstGKTtlleaLaargypvv.pEvarevleek 38 
                 +++ G p+tGKT l++a+a++   ++ + v+ e++++ 
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTSATFlRVVGSELIQKY 269
                 7899***************8743333244444444433 PP

>> PF10197.4  N-terminal domain of CBF1 interacting co-repressor CIR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   3.7         1   5.1e+02      22      33 ..      22      33 ..      20      37 .. 0.61
   2 ?   13.7   1.1   8.4e-05     0.041       8      31 ..      90     113 ..      88     114 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1
   PF10197.4 22 eEqkkieerrke 33
                eE+kk++e+r++
  MMETSP0890-20130614|6432_1 22 EEEKKEKEKRRK 33
                566666666654 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 8.4e-05
   PF10197.4   8 kNqekVWkaEQkaleEqkkieerr 31 
                 +Nqe     EQk +eE++k+ee+r
  MMETSP0890-20130614|6432_1  90 RNQEVFRPHEQKDKEEREKMEELR 113
                 89999999**************97 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018     0.087      15      52 ..     228     264 ..     218     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00018
   PF06414.7  15 kpkavllgGqpGAGKtslaellleelaagnivridaDe 52 
                  pk v+l G pG GKt la+++ +++ +  ++r+ + e
  MMETSP0890-20130614|6432_1 228 PPKGVILYGVPGTGKTLLAKAVANQT-SATFLRVVGSE 264
                 5999********************99.88888776655 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00023      0.11      51      90 ..     230     267 ..     222     284 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00023
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++v+l G pgtGkt la a++++ +    f  ++gse+  
  MMETSP0890-20130614|6432_1 230 KGVILYGVPGTGKTLLAKAVANQTS--ATFLRVVGSELIQ 267
                 899******************9976..789999**99865 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00026      0.13       4      25 ..     232     253 ..     229     277 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00026
   PF09848.4   4 ilvtGvaGtGKtvvalnllael 25 
                 ++  Gv+GtGKt++a +++++ 
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQT 253
                 6789***********9999876 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00036      0.18      25      43 ..     232     250 ..     223     257 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00036
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 ++l+G pG+GKt+lak+++
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVA 250
                 89*************9875 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00045      0.22       1      48 [.     232     270 ..     232     307 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00045
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt 48 
                 ++lyG +g+GK++lak +a++ +          ++ r + ++  ++Y 
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQTS---------ATFLRVVGSELIQKYL 270
                 689**************655544.........4444555555555555 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00056      0.28      20      51 ..     231     262 ..     219     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00056
   PF13604.1  20 vavvqGpAGtGKttvlkalrealeaagkrvvg 51 
                  +++ G++GtGKt + ka+++  +a+  rvvg
  MMETSP0890-20130614|6432_1 231 GVILYGVPGTGKTLLAKAVANQTSATFLRVVG 262
                 57888****************99998888887 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0041         2      34      54 ..     231     250 ..     214     261 .. 0.84
   2 ?    1.9   0.0      0.22   1.1e+02     128     183 ..     275     337 ..     257     341 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0041
   PF13481.1  34 sltllaGapgtGKStlalqla 54 
                 + ++l+G pgtGK+ la + a
  MMETSP0890-20130614|6432_1 231 G-VILYGVPGTGKTLLAKAVA 250
                 4.79************99887 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.22
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvggdensnsd........vgaviaalerlakrtgaav 183
                   +++l + +++l  p++v iD ++++ +   +s+s+        + +++++l+ + +r ++ v
  MMETSP0890-20130614|6432_1 275 KLVRELFRVADDL-SPSIVFIDEIDAVGSKRYDSSSGgtreiqrtMLELLNQLDGFDERGDVKV 337
                 4678899999996.5***********99998888887555555544566666666666655555 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00083       0.4      22      42 ..     232     252 ..     223     261 .. 0.85
   2 ?   -2.9   0.0       6.1     3e+03      80     114 ..     319     353 ..     312     357 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00083
  PF02562.11  22 vfaiGpaGtGKTylavalave 42 
                 v++ G  GtGKT+la a+a +
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQ 252
                 7899***********999976 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 6.1
  PF02562.11  80 lrplydaLkdllgaekvekllekgkievaplafmR 114
                 +  l ++L+ + ++  v+ ++ ++kie ++ a +R
  MMETSP0890-20130614|6432_1 319 MLELLNQLDGFDERGDVKVIMATNKIESLDPALIR 353
                 55667777777788889999999999999988888 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00073      0.36       6      23 ..     232     249 ..     229     260 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00073
   PF13479.1   6 vliYGkpGiGKTslaktl 23 
                 v++YG pG+GKT lak +
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAV 249
                 789************987 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00085      0.42       3      23 ..     232     252 ..     230     258 .. 0.90
   2 ?   -2.3   0.0       5.2   2.6e+03     104     115 ..     313     324 ..     264     338 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00085
   PF05729.7   3 vilqGeaGsGKTtLlqklasa 23 
                 vil G +G GKT L++ +a++
  MMETSP0890-20130614|6432_1 232 VILYGVPGTGKTLLAKAVANQ 252
                 89**************99987 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 5.2
   PF05729.7 104 qpvrtlLselir 115
                 +++++ + el++
  MMETSP0890-20130614|6432_1 313 REIQRTMLELLN 324
                 333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:01.03
# Mc/sec: 1046.95
//
Query:       MMETSP0890-20130614|6435_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-38  132.7   0.0    1.3e-38  132.5   0.0    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   9.8e-43   1.3e-38       6     155 ..      11     163 ..       4     164 .. 0.85

  Alignments for each domain:
  == domain 1    score: 132.5 bits;  conditional E-value: 9.8e-43
                 XXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--...STT-------S-TT.THHHH---HHHHHHHHTT------..------------------.-----------STTT----TTTTT------- CS
  PF00504.16   6 dgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa..waeagglslptllalqillligflelareqelkapeseg..sekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                 +g + ++ g fDp+gl++++   +lk++re+El+HGRvAMla lG++v e +  l   ++ ++ p+   ++a      + l+ ++l++ig++e+ +  +++ap ++    + ++  G+lgfdplgl+ +d+e+++++++kEi+nGRlAM++++g+v+q+
  MMETSP0890-20130614|6435_1  11 PG-IVAPTGlFDPVGLAAKAtdaRLKYFRESELKHGRVAMLASLGFVVGEKFHPL--FNGAIDEPSyiAFQAT---PLQKLWPFVLTAIGTVEYISIDKFNAPAEGFwtLKAEYENGDLGFDPLGLKpTDPEKLKTMQTKEIQNGRLAMLGIAGMVAQE 163
                 44.5677789*******777788***************************77553..3456677876544444...5566888****************99998877987778899******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      126  (0.00921592); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 599.09
//
Query:       MMETSP0890-20130614|6441_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.46s 00:00:00.95 Elapsed: 00:00:00.75
# Mc/sec: 639.03
//
Query:       MMETSP0890-20130614|6444_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.2   5.3    1.9e-06   27.4   3.6    1.3  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   3.6   1.4e-10   1.9e-06       5      31 .]      89     115 ..      85     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.4e-10
                 EEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   5 WeersddddGrvYYyNheTgetqWekP 31 
                 W+ + d+++ r+YYy+  T+et+W kP
  MMETSP0890-20130614|6444_1  89 WKSVLDPNTERYYYYDVDTRETTWIKP 115
                 *96675458*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 494.02
//
Query:       MMETSP0890-20130614|6450_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.93
# Mc/sec: 685.41
//
Query:       MMETSP0890-20130614|6452_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-22   77.0   0.1      1e-21   76.3   0.0    1.3  1  PF01329.14 Pterin 4 alpha carbinolamine dehydratase
    7.6e-10   39.0   0.0    2.1e-09   37.6   0.0    1.8  1  PF08242.7  Methyltransferase domain
    2.8e-09   36.6   0.0    7.1e-09   35.3   0.0    1.7  1  PF13847.1  Methyltransferase domain
    3.2e-07   30.8   0.1    8.4e-07   29.4   0.0    1.7  1  PF12847.2  Methyltransferase domain
      8e-07   29.3   0.1    2.7e-06   27.6   0.0    2.0  2  PF08241.7  Methyltransferase domain
    1.7e-06   27.7   0.0    2.8e-06   26.9   0.0    1.3  1  PF13489.1  Methyltransferase domain
    2.3e-05   23.4   0.0    4.2e-05   22.6   0.0    1.4  1  PF01209.13 ubiE/COQ5 methyltransferase family
    2.7e-05   23.6   0.0    4.6e-05   22.9   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    0.00014   21.8   0.0    0.00027   20.8   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase
    0.00097   18.1   0.0     0.0017   17.3   0.0    1.3  1  PF00398.15 Ribosomal RNA adenine dimethylase
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.017   15.0   0.0    1.4  1  PF13659.1  Methyltransferase domain
      0.023   14.2   0.0      0.071   12.6   0.0    1.8  2  PF13679.1  Methyltransferase domain
      0.044   12.5   0.0      0.078   11.7   0.0    1.3  1  PF05219.7  DREV methyltransferase
      0.053   13.7   0.0       0.14   12.3   0.0    1.8  1  PF13649.1  Methyltransferase domain
       0.08   11.8   0.0       0.14   11.1   0.0    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase
       0.11   11.4   0.0       0.35    9.7   0.0    1.8  2  PF02390.12 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF01329.14  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.2e-24     1e-21      18      94 ..      26     104 ..      11     106 .. 0.92

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 1.2e-24
                 TTTSEE--.---EEEEEE-SSHHHH---HHHHHHHHHHHT---EEEE.ETTEEEEEE--GGG----HHHHHHHHHHHHH CS
  PF01329.14  18 lpgWelee.ekklerefkfkdfkealafvnavaelaekenHHPelsl.eynkveveltThdigglsenDfklAakidel 94 
                  + W l+  ek++ +++  k++++a++f+n v+e+aek+nHHP+++l +y++ve+ ltTh+ +gl++ D+++A+ id++
  MMETSP0890-20130614|6452_1  26 ASAWVLSGdEKRIMKKLVAKNWSAAIGFINDVSEIAEKMNHHPDIHLcNYRQVELILTTHASSGLTQIDLDMAQSIDKI 104
                 579****977************************************99*****************************97 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.5e-12   2.1e-09       2      95 ..     203     296 ..     202     300 .. 0.92

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.5e-12
   PF08242.7   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkp 95 
                 +iG+GtG l++al e+  +  +++++D+sp ++++ + +l + +  n++ +   + d + +d   + D+++ ++v hh+  +r +l+++r+ L+ 
  MMETSP0890-20130614|6452_1 203 DIGAGTGLLTQALSEAVtSSGKIIATDVSPVFLTALRDRLDRLNITNVTLLPATDKDPGIDDTI-TLDLALLIDVYHHFLFPRTILRKLRSRLSR 296
                 9****************99***********************9998888888888888888777.*************************99975 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   8.3e-12   7.1e-09       3     126 ..     197     329 ..     195     355 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 8.3e-12
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdiee..leklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps.........llaelpeeleelsk 126
                  g+ v D+G+GtG l+++l+e + +++k++  D s+  +   + r+ +l ++nv+   +  ++  ++ +   + Dl +  +v++++ +p  +l+++++ l+   +l+v +++         +++++  +++ ++ 
  MMETSP0890-20130614|6452_1 197 PGQIVADIGAGTGLLTQALSEAVTSSGKIIATDVSPVFLTALRDRLDRLNITNVTLLPATDKDpgIDDT--ITLDLALLIDVYHHFLFPRTILRKLRSRLSRTAALVVIDFHrdpkrvksqGEDWVLRHIRADQA 329
                 57899****************9999********************************977777677766..559999999999***************************9977777666666666666666655 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   9.8e-10   8.4e-07       5     109 ..     201     302 ..     197     305 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 9.8e-10
   PF12847.2   5 ilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller..fDavllkgltldallal.deprrvlealpkllkpggrlvi 109
                 + D+G+GtG+l+ +l++  +  +k+++ D s+ +l  +r+++++l++ ++++ll +   +++ +++    D++ll +     ++++   pr +l++l+++l     lv+
  MMETSP0890-20130614|6452_1 201 VADIGAGTGLLTQALSEaVTSSGKIIATDVSPVFLTALRDRLDRLNI-TNVTLLPATD-KDPGIDDTitLDLALLID-----VYHHfLFPRTILRKLRSRLSRTAALVV 302
                 69***************8778999******************55544.9999888665.444444446689988877.....566666677999999999987777765 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       9.7   8.3e+03      20      41 ..     101     122 ..      86     137 .. 0.62
   2 !   27.6   0.0   3.2e-09   2.7e-06       2      88 ..     203     295 ..     202     302 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 9.7
   PF08241.7  20 arvtgvDlseemlatakerlke 41 
                  + + v++s++ l++ k+ +++
  MMETSP0890-20130614|6452_1 101 IDKIQVEFSPKWLREEKAIAEQ 122
                 4556677777766655444443 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 3.2e-09
   PF08241.7   2 dvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle...lvvadaeelpfedn.sfDvvvssevlehledpekalkeiaRvLk 88 
                 d+G+Gtgll++al+e+  ++++++++D+s+ +l+  ++rl++ +++   l  a  ++   +d  + D+ ++  v +h+  p+ +l++++  L 
  MMETSP0890-20130614|6452_1 203 DIGAGTGLLTQALSEAvtSSGKIIATDVSPVFLTALRDRLDRLNITnvtLLPATDKDPGIDDTiTLDLALLIDVYHHFLFPRTILRKLRSRLS 295
                 9*****************************************99999777777777777877799*************999999999876665 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.3e-09   2.8e-06       8     130 ..     184     319 ..     178     344 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 3.3e-09
   PF13489.1   8 eladllerllarlkpggrvLDiGcGtGillellaengf...dvtgvDpspaaigkakqaqksqfdeedaaepag......................kfdlivarevlehvpdpeellrqiaellkpgGylllstpnasla.sdeafakw 130
                 e+ ++l  ++  l pg+ v DiG+GtG l++ l+e+     ++++ D sp+   +              + +++                      + dl ++++v +h+  p+  lr +++ l     l++ ++ ++++   + +++w
  MMETSP0890-20130614|6452_1 184 EIIHALCSHAG-LGPGQIVADIGAGTGLLTQALSEAVTssgKIIATDVSPVFLTA------------LRDRLDRlnitnvtllpatdkdpgiddtiTLDLALLIDVYHHFLFPRTILRKLRSRLSRTAALVVIDFHRDPKrVKSQGEDW 319
                 45555555554.8999******************99988899******9983333............33333335555555566666677799999*****************************999999999876544133334443 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.9e-08   4.2e-05      47     109 ..     197     259 ..     182     308 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.9e-08
  PF01209.13  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaee 109
                 +g+ v D+ +Gtg l+ +ls++v ++gk++  D+++  L   +++l +   +n+ +l a  ++
  MMETSP0890-20130614|6452_1 197 PGQIVADIGAGTGLLTQALSEAVTSSGKIIATDVSPVFLTALRDRLDRLNITNVTLLPATDKD 259
                 577899*************************************************99887654 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.4e-08   4.6e-05      65     129 ..     189     253 ..     177     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 5.4e-08
                 HHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE CS
  PF01135.14  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivv 129
                 ++ +  l +g+ v ++G+G+G lt  l++ v ++g++++ + ++ + ++ + +l +l+++nv++ 
  MMETSP0890-20130614|6452_1 189 LCSHAGLGPGQIVADIGAGTGLLTQALSEAVTSSGKIIATDVSPVFLTALRDRLDRLNITNVTLL 253
                 44566799*****************************************************9864 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.1e-07   0.00027      22     120 ..     196     326 ..     179     353 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.1e-07
  PF01728.14  22 gkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpm..............................aplqgvttlqgdi..............tdp.stqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlila 120
                 g g+ v D+ga++G  +q l++ ++  gk++a D+ p+                              +           i              + p    +k++++l+   r + lv+ D   d + v++  e   l+ i+a
  MMETSP0890-20130614|6452_1 196 GPGQIVADIGAGTGLLTQALSEAVTSSGKIIATDVSPVfltalrdrldrlnitnvtllpatdkdpgidDT----------ItldlallidvyhhfLFPrTILRKLRSRLS---RTAALVVIDFHRDPKRVKSQGEDWVLRHIRA 326
                 34599*********************************66666666666555444444444332222222..........022223333322222222233335555554...5888888888777666666665555555555 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     2e-06    0.0017      18      73 ..     185     243 ..     181     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2e-06
  PF00398.15  18 vineIldklnlqekdtvlEigpGkGalTeeLakra...kqvvalEidsklvkrlqkkla 73 
                 +i    +++ l + + v +ig+G+G lT++L + +    ++ a +  + ++  l+++l 
  MMETSP0890-20130614|6452_1 185 IIHALCSHAGLGPGQIVADIGAGTGLLTQALSEAVtssGKIIATDVSPVFLTALRDRLD 243
                 56666777788899*****************99999999*****************887 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.9e-05     0.017       4      49 ..     201     253 ..     198     341 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.9e-05
   PF13659.1   4 vldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaragl.....a 49 
                 v d+g+G+G ++ a+ e++    ++++++++p  + + + +l+r ++      
  MMETSP0890-20130614|6452_1 201 VADIGAGTGLLTQALSEAVtsSGKIIATDVSPVFLTALRDRLDRLNItnvtlL 253
                 99****************9999*****************99999887444440 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.2   1.8e+03      53      86 ..     100     133 ..      43     149 .. 0.66
   2 ?   12.6   0.0   8.3e-05     0.071      12      77 ..     185     246 ..     175     265 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.2
   PF13679.1  53 klkvvgidvkeelvekaeelaeklgkkfnkslsf 86 
                 ++  + ++ +++  ++ +++ae+ +  ++++++f
  MMETSP0890-20130614|6452_1 100 SIDKIQVEFSPKWLREEKAIAEQKNDVYEDEIEF 133
                 3344445555566666666666666666555555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 8.3e-05
   PF13679.1  12 lveklvkeaakeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklg 77 
                 ++++l+ +a      + v+D+GaG g L+++l+    ++  + k+++ dv++   ++ +++ ++l+
  MMETSP0890-20130614|6452_1 185 IIHALCSHA-GLGPGQIVADIGAGTGLLTQALSE---AVTSSGKIIATDVSPVFLTALRDRLDRLN 246
                 566666653.344456799***************...55578899999999988888888777776 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.2e-05     0.078      98     181 ..     201     297 ..     190     310 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.2e-05
   PF05219.7  98 lldlGaGdGeitkrvaptfee...vyatels....etmrdrlkkkkynvlsalelqetd......vkldlilclnlldrcfdplklledirsalepn 181
                 + d+GaG G +t+ +++ +     + at++s    + +rdrl++++   ++ l   + d      + ldl l +++      p ++l+ +rs l   
  MMETSP0890-20130614|6452_1 201 VADIGAGTGLLTQALSEAVTSsgkIIATDVSpvflTALRDRLDRLNITNVTLLPATDKDpgiddtITLDLALLIDVYHHFLFPRTILRKLRSRLSRT 297
                 78***************99877889999999444446789998888776665554333211111266777777777777777777777777755443 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.14       1      53 [.     201     252 ..     201     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00017
   PF13649.1   1 ildlGCGsGrviraltral.dkgpeqrvigvDiseealelakerlsskgl.kvkf 53 
                 + d+G G+G  ++al +a+ +   + ++i+ D+s+  l + + rl++ ++ +v+ 
  MMETSP0890-20130614|6452_1 201 VADIGAGTGLLTQALSEAVtS---SGKIIATDVSPVFLTALRDRLDRLNItNVTL 252
                 67****************933...479*************999998766656655 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.14      36      80 ..     170     215 ..     153     258 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
                 -SSTT-.-HHHHHHHHHHHHHHTT------EEEE-------HHHHH CS
  PF02353.15  36 ferddm.tLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrra 80 
                 fe++++ ++++A+++ ++ ++  ++l pG+ + diG+G G l++  
  MMETSP0890-20130614|6452_1 170 FEDPETrDIAAAKNEIIHALCSHAGLGPGQIVADIGAGTGLLTQAL 215
                 777654279999***************************9876543 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   1.1e+03      86     102 ..      97     112 ..      41     128 .. 0.57
   2 ?    9.7   0.0   0.00041      0.35      21      75 ..     199     254 ..     170     267 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.3
                 S----BSEEEEES---- CS
  PF02390.12  86 fadnslekifinFPDPW 102
                 +a +s++ki++ F+  W
  MMETSP0890-20130614|6452_1  97 MA-QSIDKIQVEFSPKW 112
                 22.55556665555444 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00041
                 -EEEE--------HHHHHHH-T.TSEEE---S-HHHHHHHHHHHHHH--TTB---- CS
  PF02390.12  21 klvleIGfGsGdflvalAkknP.dklflGiEirqkvvekvlkkiealglkNlrile 75 
                 ++v++IG G G ++ al+++   + ++++ +++   + ++ ++ ++l+++N+ +l 
  MMETSP0890-20130614|6452_1 199 QIVADIGAGTGLLTQALSEAVTsSGKIIATDVSPVFLTALRDRLDRLNITNVTLLP 254
                 39****************98651679**************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 990.14
//
Query:       MMETSP0890-20130614|6458_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-17   62.0  13.4    9.5e-15   54.4   2.6    2.3  2  PF05093.8 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis


Domain annotation for each model (and alignments):
>> PF05093.8  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.3   3.3e-06     0.045      20      39 ..     119     138 ..     105     147 .. 0.78
   2 !   54.4   2.6     7e-19   9.5e-15      67      99 ..     146     178 ..     135     181 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.3e-06
   PF05093.8  20 kkkkaCkdCtCGlkeeeeee 39 
                 + +k C +CtCG+++ + ++
  MMETSP0890-20130614|6458_1 119 SARKPCANCTCGRADSNPST 138
                 579***********987655 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 7e-19
   PF05093.8  67 gkkssCgsCaLGDAFRCssCPylGlpafkpgek 99 
                 + +ssCg+C  GDAFRC++CPylG pafkpg++
  MMETSP0890-20130614|6458_1 146 SMSSSCGNCHKGDAFRCAGCPYLGKPAFKPGQE 178
                 556****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 652.92
//
Query:       MMETSP0890-20130614|6460_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-07   28.3   0.0    1.5e-06   27.4   0.0    1.5  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
      0.045   13.5   1.0      0.082   12.6   0.0    1.8  2  PF09581.5  Stage III sporulation protein AF (Spore_III_AF)
      0.073   13.4   1.4       0.23   11.8   0.9    2.0  1  PF00096.21 Zinc finger, C2H2 type
       0.24   10.7   2.6       0.17   11.2   0.3    1.8  2  PF09128.6  Regulator of G protein signalling-like domain


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.4e-10   1.5e-06       3      34 ..     315     346 ..     313     347 .] 0.90

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.4e-10
                 T--HHHHHHHHHHTT------HHHHHHHHHHH CS
  PF02037.22   3 kltVaeLKaeLkkrGLptsGkKaeLieRLkeh 34 
                   +  eL+a+L++ GL+  G+K eLi RL+ h
  MMETSP0890-20130614|6460_1 315 DISTRELRAMLQSAGLSDRGTKSELITRLESH 346
                 55778************************998 PP

>> PF09581.5  Stage III sporulation protein AF (Spore_III_AF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.4e-05     0.082      66     140 ..      47     120 ..      30     189 .. 0.79
   2 ?   -1.3   0.1      0.43   1.5e+03      55      97 ..     285     326 ..     268     332 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.4e-05
   PF09581.5  66 eeqkkeleasqeaaaleeyrkrlekqieellkleygiktvdvevevaeeqesrkfaikevvvtvkeaetgktktg 140
                 + q ++ + +++ ++++ y+k++  +i+++l+ e++++ + vev++ +++   +f++++  + + +a +++  + 
  MMETSP0890-20130614|6460_1  47 KTQRRRRARKSNIQTVDRYKKEIDASISAKLE-EEEVDLAFVEVRLPKNEHGLTFKLNAAGIPIVSAVDEDSAAY 120
                 56778888999999******************.99**************99999977777777666555555543 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.43
   PF09581.5  55 kssedpvketieeqkkeleasqeaaaleeyrkrlekqieellk 97 
                 k  ++++k    ++k+  ++++ +++++ y++   +++++ l+
  MMETSP0890-20130614|6460_1 285 KT-KEINKILSTNDKDTAQDANADETTSFYSDISTRELRAMLQ 326
                 33.5666666677777777777777777777777777666665 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   6.7e-05      0.23       2      23 .]      23      45 ..      22      45 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.7e-05
                E------EESSHHHHHHHHCC.H CS
  PF00096.21  2 qCpdCgksFsrksnLlrHlrr.H 23
                +Cp C+  F ++ +++rHl + +
  MMETSP0890-20130614|6460_1 23 ECPNCKANFITSGMFHRHLQNgC 45
                6*****************98766 PP

>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.51   1.7e+03      69     110 ..      12      74 ..       8      90 .. 0.50
   2 ?   11.2   0.3   4.9e-05      0.17      35     105 ..     247     320 ..     244     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.51
   PF09128.6  69 lkvkvseelaadi.....................errrselrkeetlrrvlqelqqrvleeiq 110
                 l+++++++ +++                      ++++ + r+ + + + + + ++++ + i+
  MMETSP0890-20130614|6460_1  12 LRAEMPQSTTSECpnckanfitsgmfhrhlqngcTKTQRRRRARKSNIQTVDRYKKEIDASIS 74 
                 555555555555555555555555555555555533333333333333334444444444444 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 4.9e-05
   PF09128.6  35 lfyLiadlyksatsKearrlal...eihstFldrtaplkvkvseelaadierrrselrkeetlrrvlqelqqrv 105
                 +++L+ + +k+   K+ r l+l   +i s F  r+a lk k  +++++  ++   ++ +++ ++ + + +  r 
  MMETSP0890-20130614|6460_1 247 VCMLMKEHFKNKRDKDGRCLFLteqQIRSYFSRRAAALKTKEINKILSTNDKDTAQDANADETTSFYSDISTRE 320
                 799*****************965558************************999999999999888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 1385.89
//
Query:       MMETSP0890-20130614|6462_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.6   0.0      3e-07   30.2   0.0    1.8  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.2e-11     3e-07      46     112 ..       5      71 ..       1      72 [. 0.92

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.2e-11
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  46 sklpsleleirlpedYP.eeaPiitlsstelslkelrkrleekleelaeenleGepviftlidllqee 112
                 + ++sl+lei++ e YP + +P +++ + ++  k+  +++ee   + a en  G++++f++++ ++e 
  MMETSP0890-20130614|6462_1   5 KAFVSLSLEIEVDECYPsKNRPRFKVLEAKGLAKNHLNQIEEVAISTATENE-GMVCVFDVATAVKEW 71 
                 56789********************999888888*****************7.************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       930  (0.0680222); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 1060.61
//
Query:       MMETSP0890-20130614|6463_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-39  132.8   0.1    1.4e-38  132.1   0.0    1.3  1  PF00689.16 Cation transporting ATPase, C-terminus
    7.7e-34  117.8   0.0    1.7e-33  116.7   0.0    1.6  1  PF00702.21 haloacid dehalogenase-like hydrolase
    5.5e-20   71.2   1.0      1e-19   70.4   0.7    1.5  1  PF00122.15 E1-E2 ATPase
    2.6e-18   65.6   0.0    1.4e-17   63.2   0.0    2.2  2  PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
    3.7e-17   63.0   0.4    9.2e-17   61.7   0.3    1.7  1  PF12710.2  haloacid dehalogenase-like hydrolase
    2.8e-08   33.5   2.2    1.3e-05   24.8   1.0    2.2  2  PF08282.7  haloacid dehalogenase-like hydrolase
     0.0054   16.9   0.0      0.024   14.7   0.0    2.1  2  PF13419.1  Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.062   13.0   0.0       0.15   11.8   0.0    1.6  1  PF13344.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00689.16  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   7.9e-42   1.4e-38       1     182 []     627     844 ..     627     844 .. 0.89

  Alignments for each domain:
  == domain 1    score: 132.1 bits;  conditional E-value: 7.9e-42
  PF00689.16   1 plplsaiqiLwinLvtDslpalaLaleppekdimkrkPrkkkeplfskkmllriliqgllqalvtllafflgllgfgisekenkls........................................snfaqtaaFitlvlsqifnalnlrsrkeslfkfsgifsnkllllavllslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelrkll 182
                 p +l+++++Lw+nLvtD+ pa+aL+++pp++d ++++Prk ++p++++ +l+r ++ g++++++t+ +f+  +  +g+  ++   s                                         + aqt+a++tlv +++f+al + s ++s+++ +  ++nk l ++v+l l l++ ++y+p l+++fg++ l+l +w +++l a+ +l+vde +k l
  MMETSP0890-20130614|6463_1 627 PDVLTPLHLLWVNLVTDGPPATALGFNPPDPDALNQPPRKVSDPVLTPWLLTRYALTGAYVGFATIKIFLDDYAKHGVPLDKL--StwatcdtnvkpwkkfmplvassnvpfndncalafgehsplKANAQTLALTTLVSLELFKALGAVSMDQSIMR-VPPIKNKALCIGVALPLCLHLTLLYTP-LRSLFGLTALTLDDWRTVFLYAAPILIVDECLKAL 844
                 578******************************************************************88888554444432..22355556666666677777777777777778888888888889*****************************.88889*********************9.*******************************9975 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0     1e-36   1.7e-33       2     203 ..     127     557 ..     126     558 .. 0.81

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 1e-36
                 CEEEEECCTTTBETHHHH.......................................HHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH...CEECTCCHCCEECEEEE......EE.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.........................................................................................................................................H...............HHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC...........SEEEEHHH..............................TTSHHHHHHHHHHHTS-GG.GEEEEESSCTTHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx......xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................................................................................................................x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...........xxxxxxxx..............................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  PF00702.21   2 ktvvfDktGTLtegepsv.......................................lgnkaalalaaaletgsehpigkavvaaakanstr...tgfatfigrgvsgkvdg......av.....gnpewmtalglrviapdlvaaegqskgrtvvvla.........................................................................................................................................q...............aralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi...........dslvfaev..............................kPepklfvaaieeLqidpg.evamvGDgvnDapalaaA 203
                 +++++DktGTLt+++++v                                       l+   +l+la++l        ++   aa  a          ++++  g  ++v++       v     g pe ++a +  v + +++ +   s+  + v++                                                                                                                                                          + +lgv++++dp++p+a++a+a++ +agi v+++tgd +eta aia+++gi           +      +                              +Pe+k  +++i+ L ++ +  +am+GDgvnDapal++A
  MMETSP0890-20130614|6463_1 127 TVICSDKTGTLTTNQMTVasvltptaassklhrpvhiaerritgigydpsdgrveprLDDPSILDLAQDL--------AARDMAAVCA---LcndAKLQEDPTTGSLIRVGEpteaalSVlcekfGLPEFLKADAPSVEPWRKATTAWTSHAYERVATLefdrarksmsvltrprtdstelkpkylvpstdegtvatrsdtqeeatnnqpvitipngptarlfvkgapdsvlrrciairdpetgitrlltdeeraawevacahlaarplrclalavrdelpeeliayahagphappPislanpnlheavesgLTLLGVVGIRDPPRPDAKDAIARCEKAGIrVYMITGDSRETAIAIASELGIlknadpsrafqG------DaffrehseradtiraqllspdngnavfyrtAPEDK--QRIIKLLHEKHNdVTAMTGDGVNDAPALQQA 557
                 79****************9999999999999999999999999999999999999998888888888888........4444444444...234577899**************987722566789999999999999988888888877777767666788888888888999999999999999999999999999999999999999999999999988888888888888888888888888888877777777777777777777777776666666666666555555550555556666667777******************************************************997766661......2344445666666666777777777777777*****..********655599***************98 PP

>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.7   5.9e-23     1e-19     120     230 .]       2     122 ..       1     122 [. 0.92

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 5.9e-23
  PF00122.15 120 Vtatgketeigkiarlvqeaks..aetplqkkldrlaklllilvlavailifiislvt........dvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230
                 V+atg+ +e+g+i   v eak   a+tpl  kld +a  l++++ av++ +f+ s+ +        +  + +l+++  ++al v+aiPegLp+++tl+l++g++r+a++ v+vr+l+++Et
  MMETSP0890-20130614|6463_1   2 VVATGMTSEMGRIQAGVTEAKLdkAKTPLAIKLDAFAHQLTLVIGAVCAGTFAASVPRfssaifkgNAMRGALHYAKSSVALGVAAIPEGLPAVITLCLSLGTRRMAQRRVIVRRLPSVET 122
                 9****************999865689***********************999777777777887777889999999999*****************************************8 PP

>> PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   8.3e-21   1.4e-17       1      88 [.     206     350 ..     206     353 .. 0.78
   2 ?   -1.3   0.0       1.1     2e+03      18      33 ..     457     475 ..     442     504 .. 0.72

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 8.3e-21
   PF13246.1   1 alcnsasleeeeekenee..ilGdptEaALlvlaeklgvgkd...............veelreeykkvaelpFnserKrmsvv.........hk.................................ekeylllfvKGAperilerC 88 
                 alcn+a+l+e++   +++   +G+ptEaAL vl+ek+g  +                 ++    y++va+l+F++ rK+msv+          k                                 ++   +lfvKGAp+++l+rC
  MMETSP0890-20130614|6463_1 206 ALCNDAKLQEDP--TTGSliRVGEPTEAALSVLCEKFGLPEFlkadapsvepwrkatTAWTSHAYERVATLEFDRARKSMSVLtrprtdsteLKpkylvpstdegtvatrsdtqeeatnnqpvitipNGPTARLFVKGAPDSVLRRC 350
                 79******5555..4444569****************88766999****99999988788999********************555555555005555555556666666777778888889999964445556************* PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.1
   PF13246.1  18 e...ilGdptEaALlvlae 33 
                 +   i+Gd  E+A+  + e
  MMETSP0890-20130614|6463_1 457 RvymITGDSRETAIAIASE 475
                 1445899*****9976655 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.3   5.4e-20   9.2e-17       1     191 []     129     555 ..     129     555 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 5.4e-20
                 EEE------B---...........HHHHHHHHH--H...HHH.....................................................................................................................................................................................................................HHHHHHHHHHHHT-..HHHH----HHHHHHHHHH................................H--B.......HHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-----........................HH----HHHHHHHHHSHHHHHHHH---TT----S--EE---GGGHHHHH CS
   PF12710.2   1 avFDkDGTLtedd..tdflryllklldvlgealakdaslaslkdst.............................................................................................................................................................................................................cltlsdpkdllellaeyg..girviglaarylealake.ieea........................klfegfi.......pdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlateledeg........................ggkvdgritgkldgKaraverlvvlaykqvggrivvaiGDsanDlpalk 191
                 +++Dk+GTLt++   +          +vl+   a      +l++++                                                                                                                                                                                                                   +++ +e+  + +   ++++ la + +++l +e i+ a                        +++ g++       pda++++++  +ag+rv++++gd+r++a+++a+elgi+    ++  +                            g+ v+ r  ++ d K+r+++ l    ++ ++ + +++ GD+ nD pal+
  MMETSP0890-20130614|6463_1 129 ICSDKTGTLTTNQmtV---------ASVLTPTAAS----SKLHRPVhiaerritgigydpsdgrveprlddpsildlaqdlaardmaavcalcndaklqedpttgslirvgepteaalsvlcekfglpeflkadapsvepwrkattawtshayervatlefdrarksmsvltrprtdstelkpkylvpstdegtvatrsdtqeeatnnqpvitipngptarlfvkgapdsvlrrciairdpetgitrlltdE-----ERAAWEVACA-HlaARPLRCLALAVRDELPEElIAYAhagphapppislanpnlheavesgLTLLGVVgirdpprPDAKDAIARCEKAGIRVYMITGDSRETAIAIASELGILKNADPSRAF---QgdaffrehseradtiraqllspdnGNAVFYRTAPE-D-KQRIIKLL----HE-KHNDVTAMTGDGVNDAPALQ 555
                 7************532.........3333333322....2222222344556666667777888889999999*****************************************************************************************************************************************************************777777777776433330.....3333333332.13346666666667777776666666889999999998888888888888777777788888889999*****9899*************************977555555...224679999999999999999999877788888888.8.99999999....54.455679************97 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012         2      18      80 ..     442     510 ..     437     540 .. 0.75
   2 !   24.8   1.0   7.6e-09   1.3e-05     196     250 ..     531     586 ..     525     590 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHTT-EEEEEESS-HHHHHCCHCHTTCC...SEEE-E---EE....CCTTEEEEE---- CS
   PF08282.7  18 eetkeaikklqekgikvviaTGRslsevlplleelgld...lpvialNGali...ddekgeilsknels 80 
                 +  k+ai++++++gi+v+  TG s  +++ ++ elg+     p  a+ G      ++e+  ++ ++ ls
  MMETSP0890-20130614|6463_1 442 PDAKDAIARCEKAGIRVYMITGDSRETAIAIASELGILknaDPSRAFQGDAFfreHSERADTIRAQLLS 510
                 5689*******************************9644666666666655555545555555555555 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 7.6e-09
                 HHTT--GGGE.EEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE---GGG--- CS
   PF08282.7 196 kalnisleev.iafGDgeNDieMLelaglgvAmgnaspevkaaAdyvtdsnnedGv 250
                 k l+ ++++v +  GDg ND + L++a +g++mg +++ +k+aAd+v  + +  ++
  MMETSP0890-20130614|6463_1 531 KLLHEKHNDVtAMTGDGVNDAPALQQASIGISMGTGTEVAKEAADMVLMDDDFASI 586
                 55555555550556********************************9987776555 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-05     0.024      75     117 ..     437     479 ..     360     493 .. 0.88
   2 ?   -1.8   0.0       1.7     3e+03      51     102 ..     492     546 ..     484     557 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-05
   PF13419.1  75 rlelfpdvvellrrlkakglklvilSngsaeavellleklgle 117
                 r +++pd++++++r+ ++g+++++++  s+e++  + + lg++
  MMETSP0890-20130614|6463_1 437 RDPPRPDAKDAIARCEKAGIRVYMITGDSRETAIAIASELGIL 479
                 568************66***************99999999987 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.7
   PF13419.1  51 dllrelpkdaeeilealkea...nlesrlelfpdvvellrrlkakglklvilSng 102
                 +++re++++a+ i++ l+     n++++ ++ +d  ++++ l++k+  + +++  
  MMETSP0890-20130614|6463_1 492 AFFREHSERADTIRAQLLSPdngNAVFYRTAPEDKQRIIKLLHEKHNDVTAMTGD 546
                 5789999999998888777788888899999999999999999899999999875 PP

>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.7e-05      0.15       7      51 ..     432     476 ..     429     495 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.7e-05
   PF13344.1   7 GvLwrgdkaipgaaealkalraagkpvvllTNnsskseeeyakkl 51 
                 Gv+   d + p a++a+ ++++ag++v+++T  s+++  ++a +l
  MMETSP0890-20130614|6463_1 432 GVVGIRDPPRPDAKDAIARCEKAGIRVYMITGDSRETAIAIASEL 476
                 7777778899*********************99998866666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:01.08
# Mc/sec: 1930.40
//
Query:       MMETSP0890-20130614|6456_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-13   48.6   9.5    7.8e-13   47.7   6.6    1.5  1  PF06203.9 CCT motif
  ------ inclusion threshold ------
       0.03   13.8   0.9       0.63    9.6   0.0    3.1  4  PF11890.3 Domain of unknown function (DUF3410)


Domain annotation for each model (and alignments):
>> PF06203.9  CCT motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   6.6   1.1e-16   7.8e-13       1      44 [.     235     278 ..     235     279 .. 0.96

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.1e-16
   PF06203.9   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R+a++  + +Kr++R + Kk++Y++RK  A+sR RvKGrFvk++
  MMETSP0890-20130614|6456_1 235 RKARVGIFIQKRRNRVWTKKVKYNVRKNFADSRMRVKGRFVKKE 278
                 8999999***********************************97 PP

>> PF11890.3  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.042   2.9e+02      44      66 ..      89     111 ..      44     130 .. 0.82
   2 ?   -1.9   0.0      0.36   2.4e+03      59      74 ..     169     184 ..     167     198 .. 0.67
   3 ?    9.6   0.0   9.3e-05      0.63      44      64 ..     204     224 ..     189     237 .. 0.78
   4 ?   -3.2   0.0      0.87   5.9e+03      56      67 ..     257     268 ..     256     283 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.042
   PF11890.3  44 ekaegFdalRknYpeRrEfsalk 66 
                 +++++F + R nY +R+ ++++k
  MMETSP0890-20130614|6456_1  89 STHDDFFSSRLNYGDRYKIEQMK 111
                 67888999999999999888776 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.36
   PF11890.3  59 RrEfsalkveskgesk 74 
                 +rE+ + +++s+++  
  MMETSP0890-20130614|6456_1 169 HRELPTRQLMSQNNTT 184
                 6888888887666554 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 9.3e-05
   PF11890.3  44 ekaegFdalRknYpeRrEfsa 64 
                 +  +gFd+lR +Y  R  f +
  MMETSP0890-20130614|6456_1 204 ASDTGFDLLRSEYNPREKFPS 224
                 7789************98876 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 0.87
   PF11890.3  56 YpeRrEfsalkv 67 
                 Y +R+ f   ++
  MMETSP0890-20130614|6456_1 257 YNVRKNFADSRM 268
                 444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.60
# Mc/sec: 1158.24
//
Query:       MMETSP0890-20130614|6465_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-35  121.1   0.0    5.8e-35  120.7   0.0    1.1  1  PF00155.16 Aminotransferase class I and II
  ------ inclusion threshold ------
      0.066   11.8   0.1        4.7    5.7   0.0    2.1  2  PF12094.3  Protein of unknown function (DUF3570)
       0.11   12.1   0.0       0.31   10.7   0.0    1.7  2  PF01183.15 Glycosyl hydrolases family 25


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   1.3e-38   5.8e-35      24     356 ..     120     481 ..     106     488 .. 0.86

  Alignments for each domain:
  == domain 1    score: 120.7 bits;  conditional E-value: 1.3e-38
                 HHHHHHHCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HH.HHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHH...HHHHHH-S-.EEEEE--CCCC.TBGGG----EEEE-...HHHHHHHHHCCTTTS.-----CCHHHHCTSHHHHHH......HHHHHHHHHHHHHHHHHHCC.CC.-TCHHHH----EE-----HH......HH.............HCCH---BE--...........---EE-----TTTH CS
  PF00155.16  24 akaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagali.ealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat...ranveeepn.llivgslsKaf.GlaGeRvGyilgna...avvsqlrklsrpfls.ssllqaavaaalsdallkqs......eleemrqrlqkrrkelrdeLael.glkvlasqsgmflltdlsaetakelskk.............Lleevgvyvtpgtsftv...pgrlRitvAglteeel 356
                 a+a      +g+++  y++++g + ++e++a+f+ ++ + + +++ ++  + Ga+ +i  ++  l++ + +d+ ++p p y+ y+  + lsgg   +y l+ e d++++ ++le  ++ a  + kk++ +++ +p NP+G+ ++++ +e+++++++ ++l l+ De+Y++  + +++++++   ++++ +++  l+   s sK f G  G+R Gy  ++    +++ q+ kl++  l    ++q av  +++ +  +++      + +e  + l++r++ + d L++l g+++   q++++++  +   +   l+ k             +le  g++ +pg+ f+    + ++R ++   +e+++
  MMETSP0890-20130614|6465_1 120 AQAYL-AQVSGNSIGAYSDSKGIKLVREEVADFIYKRDGFECDPD-NIYITDGASTAIkRVVSLLMTGDSSDALFLPFPQYPLYSALVSLSGGVAAPYYLT-EGDWSINSHELEINYQAAIDQGKKPRAFVFLNPGNPSGATMNRQAIETIIRFCQDKKLPLLADEVYQDNIYHGPSFISArkvVHELGAHDLpLFSFHSISKGFtGECGLRGGYMEVTNldnEFKAQISKLANMSLCsNVPGQIAVGLMVNPPSSEIEahnyktQRDEILASLKRRSEIVADTLNALpGISCPRAQGALYVFPSIQVPKRAVLAAKqkniapdlfycirMLEATGLVTVPGSGFGQregTFHFRSSF-LPSESDI 481
                 33333.378999*********************************.**999998766515777777799*************************9999877.9*************************************************************************999998885555554446**********************99777999999999998765554999***********9999999988888888899999**********999****************999884444444445777999999*****************9985555677777.5555555 PP

>> PF12094.3  Protein of unknown function (DUF3570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.001       4.7     293     316 ..     214     237 ..     202     247 .. 0.80
   2 ?    4.0   0.0    0.0034        16      50      78 ..     507     535 ..     495     537 .] 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.001
   PF12094.3 293 sYRyysDdWginshtleaeyrqkl 316
                  Y     dW insh le+ y+  +
  MMETSP0890-20130614|6465_1 214 PYYLTEGDWSINSHELEINYQAAI 237
                 4556778*************9766 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0034
   PF12094.3  50 gsgsikkplgdkvsltaklvlDsltgASp 78 
                  + s++ p ++++sl+++lv D+ t+AS+
  MMETSP0890-20130614|6465_1 507 QLHSQSSPTAENESLSFNLVNDTPTSASA 535
                 5567788999******************7 PP

>> PF01183.15  Glycosyl hydrolases family 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5   6.8e+03      61      76 ..      33      48 ..      28      55 .. 0.80
   2 ?   10.7   0.0   6.7e-05      0.31      22      71 ..     212     262 ..     200     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.5
  PF01183.15 61 vdsseakaeadyflsn 76
                ++++ a ++a+y ++ 
  MMETSP0890-20130614|6465_1 33 ISMNPAVQQAKYAVRG 48
                57889999**999875 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 6.7e-05
  PF01183.15  22 fviiKateGtdyvdp.kakeqvasaraaglkvgaYhFarfvdsseakaead 71 
                 ++ + +teG++ +++  ++ +++ a+++g+k  a++F+++++ s a+ + +
  MMETSP0890-20130614|6465_1 212 AAPYYLTEGDWSINShELEINYQAAIDQGKKPRAFVFLNPGNPSGATMNRQ 262
                 566679****9998736899********************98877765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.68
# Mc/sec: 1892.42
//
Query:       MMETSP0890-20130614|6468_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   23.7   0.2      0.022   14.5   0.0    2.1  2  PF13374.1 Tetratricopeptide repeat
    0.00023   20.9   0.0    0.00047   19.9   0.0    1.5  1  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.035   13.6   0.3      0.073   12.6   0.1    1.6  2  PF13414.1 TPR repeat
      0.043   14.3   0.2       0.16   12.5   0.2    1.9  2  PF13428.1 Tetratricopeptide repeat
      0.052   13.3   0.0      0.052   13.3   0.0    1.3  1  PF06667.7 Phage shock protein B
        0.1   13.1   0.1       0.21   12.1   0.1    1.6  1  PF13432.1 Tetratricopeptide repeat
       0.13   12.4   0.1       0.78    9.9   0.0    2.0  2  PF13431.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0016         3      31      41 ..       5      15 ..       2      16 .. 0.89
   2 !   14.5   0.0   1.1e-05     0.022       2      41 ..      18      57 ..      17      58 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0016
   PF13374.1 31 irrrllGddHP 41
                i++ l+G+dHP
  MMETSP0890-20130614|6468_1  5 IWEDLHGPDHP 15
                8999******9 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.1e-05
   PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
                ++a+  LA +l a+g+ +eA++ +  a a+ +r+l ++ P
  MMETSP0890-20130614|6468_1 18 STARKYLAKLLKALGKDGEAERQYDIAIATLERILDPNSP 57
                678889**************99998888889999999998 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07   0.00047      35      74 ..       7      46 ..       2      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.4e-07
   PF13424.1 35 lrelgddhpdtaralnnlanlylalgdydeAleylekAle 74
                  ++g+dhp + +a   la l+ alg+  eA++ +  A++
  MMETSP0890-20130614|6468_1  7 EDLHGPDHPKVSTARKYLAKLLKALGKDGEAERQYDIAIA 46
                4578*****************************9987776 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.7e-05     0.073      34      66 ..      12      46 ..       2      54 .. 0.84
   2 ?    9.3   0.3    0.0004      0.78       8      38 ..      30      58 ..      24      63 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.7e-05
   PF13414.1 34 pnnae...lyynlAlaylklgkdyeeAledyekAle 66
                p++++   +   lA+++  lgk + eA + y+ A++
  MMETSP0890-20130614|6468_1 12 PDHPKvstARKYLAKLLKALGK-DGEAERQYDIAIA 46
                777777779999*********7.59********997 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0004
   PF13414.1  8 elGnalfkegdydeAieayekAle.....ldpnnae 38
                +       +g+  eA+++y+ A++     ldpn+++
  MMETSP0890-20130614|6468_1 30 A-------LGKDGEAERQYDIAIAtleriLDPNSPN 58
                3.......3444445555555554333334555554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.14   2.8e+02      30      44 .]      13      27 ..       2      28 .. 0.78
   2 ?   12.5   0.2   8.3e-05      0.16       3      35 ..      20      57 ..      18      63 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.14
   PF13428.1 30 laPddaealllLarl 44
                ++P+  +a+++La+l
  MMETSP0890-20130614|6468_1 13 DHPKVSTARKYLAKL 27
                467778899999976 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 8.3e-05
   PF13428.1  3 allalarallalGdpdeAiallrrala.....laPdda 35
                a+  la +l alG   eA+++++ a+a     l+P+++
  MMETSP0890-20130614|6468_1 20 ARKYLAKLLKALGKDGEAERQYDIAIAtleriLDPNSP 57
                56678888888888888888888887744444556655 PP

>> PF06667.7  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.052      56      73 ..      43      60 ..       3      62 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
   PF06667.7 56 eRietlErildaespnwr 73
                  i tlErild +spn+ 
  MMETSP0890-20130614|6468_1 43 IAIATLERILDPNSPNYA 60
                4699************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.21      28      63 ..      15      55 ..       7      60 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
   PF13432.1 28 PeaaeallllaeallrlgrldeAaallraal.....alaPd 63
                P+   a+ +la +l +lg+  eA++ ++ a+      l+P+
  MMETSP0890-20130614|6468_1 15 PKVSTARKYLAKLLKALGKDGEAERQYDIAIatlerILDPN 55
                788899999********999999999999886666555554 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0004      0.78       9      33 ..      14      38 ..      10      39 .. 0.87
   2 ?    0.2   0.0      0.53     1e+03       8      15 ..      52      59 ..      48      63 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0004
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ + a+ +LA+ll+++G+  eAe
  MMETSP0890-20130614|6468_1 14 HPKVSTARKYLAKLLKALGKDGEAE 38
                566688899************9998 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.53
   PF13431.1  8 ldPnnada 15
                ldPn+++ 
  MMETSP0890-20130614|6468_1 52 LDPNSPNY 59
                58998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 216.01
//
Query:       MMETSP0890-20130614|6471_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 208.83
//
Query:       MMETSP0890-20130614|6470_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-10   39.5   0.7    5.2e-10   38.8   0.5    1.3  1  PF00150.13 Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
      0.016   15.0   0.5       0.11   12.4   0.1    2.3  2  PF08578.5  Protein of unknown function (DUF1765)


Domain annotation for each model (and alignments):
>> PF00150.13  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.5   7.6e-14   5.2e-10      11     172 ..      74     238 ..      64     321 .. 0.70

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 7.6e-14
                 GGGCST-SSGCSHHHHHHHHHHH--SEEEEEEEH...GGGG-STTTTC--HHHHHHHHHHHHHHHTTT-EEEEEEEES...............SSSG.-S-CCCTHHHHHHHHHHHHHHHHHHCTT-...TTBEEEESSSS--TSS-TTBT-CCTTTBHHHHHHHHHHHHHCT-TT.SEEEEE- CS
  PF00150.13  11 kglstswgnpyttkalidevkdagfntvRlpvsw...gelvennpdykvdenslerveevvkyakenglyvildiHse...............egwltkadgnssedtaeeffkklwtqiAerykkn...devvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn.rliiveg 172
                 + l+ +w +   t++ ++ ++ ag+++vR+p+++   g +  +++ y   + + + +  +vk+a ++g+ v +d+H                 ++w ++++  + +      +++ +++i++r k +   +++ +f l+NEP ++ +   w       + ++++ a++ IR+   n   + ++ 
  MMETSP0890-20130614|6470_1  74 RRLNEHWRTW-VTEDDMEGLRLAGITHVRVPFGYwitGDIA-EDEPY--VSGQWKYFARMVKWARARGISVWIDLHAApgsqngfdnsgrignATWDKSMENVNRT------LSA-IEWISKRIKEEgllNDITGFGLLNEPDQHINY--W------RMLSFYNHAYELIRKELYNgVSVYIGD 238
                 5566677653.78999999*************954744444.56665..4667789*********************97777666665555554452233233333......333.5666666654333399************7665..9......666688999999998766655566655 PP

>> PF08578.5  Protein of unknown function (DUF1765)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.6e-05      0.11      73     113 ..      44      84 ..      41      86 .. 0.94
   2 ?   -0.4   0.0      0.15     1e+03      61     110 ..     204     253 ..     195     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
   PF08578.5  73 flfnvwdlipadlskkvalcvdfLlseevfekffthwspmV 113
                  lf+ wd ++ ++ +++  ++++L + e+f+++ +hw + V
  MMETSP0890-20130614|6470_1  44 SLFAEWDSFDPTSPRDEWTYCETLGKTECFRRLNEHWRTWV 84 
                 59***************9*******************9877 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.15
   PF08578.5  61 sdhvqsllralaflfnvwdlipadlskkvalcvdfLlseevfekffthws 110
                  d ++   r+l+f    ++li ++l + v++++  +++ + f+ f  + +
  MMETSP0890-20130614|6470_1 204 PDQHINYWRMLSFYNHAYELIRKELYNGVSVYIGDMFNPQSFNWFWHNGN 253
                 56667778899998889999999999999999999999888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.91
# Mc/sec: 1445.71
//
Query:       MMETSP0890-20130614|6474_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-09   35.3   8.6    1.2e-08   34.4   6.0    1.5  1  PF00628.24 PHD-finger
    9.8e-07   28.4   0.1    2.2e-06   27.3   0.0    1.6  1  PF00855.12 PWWP domain
  ------ inclusion threshold ------
      0.044   13.8   1.7       0.13   12.3   1.2    1.8  1  PF13771.1  PHD-like zinc-binding domain


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   6.0   2.6e-12   1.2e-08       2      50 ..      27      72 ..      26      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.6e-12
                BTTTTCTCTTS-EEEBS.SSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
  PF00628.24  2 CkiCgesdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCke 50
                C+ C++ ++e+ lv C  +C++wfH++C+gl++     peg w C+ C e
  MMETSP0890-20130614|6474_1 27 CDKCNDPNDEELLVECSaNCDRWFHTYCVGLSHV----PEGVWACPYCAE 72
                9*****99********768*************55....6677******86 PP

>> PF00855.12  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.7e-10   2.2e-06       4      23 ..      82     101 ..      80     149 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.7e-10
                 ---EEEE-B---BSEEEEEE CS
  PF00855.12   4 igdlVlaKvkgfpwWPArvv 23 
                 igd+V+aKv+ fpwWP++++
  MMETSP0890-20130614|6474_1  82 IGDIVFAKVEEFPWWPGVII 101
                 79****************97 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   2.9e-05      0.13      35      66 ..      23      55 ..       3      72 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.9e-05
   PF13771.1 35 rklkCslCkkk..kGaciqCskkkCkrafHvtCa 66
                 + kC  C+    +   ++Cs+ +C r fH++C 
  MMETSP0890-20130614|6474_1 23 DTIKCDKCNDPndEELLVECSA-NCDRWFHTYCV 55
                4679****95544789****99.9*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 1204.40
//
Query:       MMETSP0890-20130614|6482_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-72  241.3   0.0    9.4e-72  241.1   0.0    1.0  1  PF00069.20 Protein kinase domain
    4.1e-31  107.9   0.0    6.4e-31  107.2   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
     0.0011   18.6   0.0      0.002   17.7   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.022   13.7   0.0      0.059   12.3   0.0    1.7  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.1   0.0   2.8e-75   9.4e-72       3     260 .]      11     290 ..       9     290 .. 0.98

  Alignments for each domain:
  == domain 1    score: 241.1 bits;  conditional E-value: 2.8e-75
                 EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH......................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks......................eelkdlikkllekdpakRltaeeilkhpwl 260
                 ++   G+G++G+Vyk+k+++tg+ vA+K+++ e e++ +  ta+rE+++lk+l+Hpniv+l +v +++ +lylv+e++++ dl+++l   +g l+ + +k+++lq+l+g++++H +g++HrDLKp+N+L++k+g+lk+aDFGla+ +  + + lt+ v+t +Y++PE+ll+++ y +++D+W++G i++e++t+k++f+g+ e d+l +i +il+++ +  +p  ss +                      e   +l + +l++ p++R++a+ +l+h ++
  MMETSP0890-20130614|6482_1  11 KGASAGEGAYGVVYKGKDRQTGQFVAMKKIRLELEDEGMPSTALREISLLKELQHPNIVELKDVLQSDGRLYLVFEFLDK-DLKRYLDsVDGALKPKLVKSYTLQLLRGVAFCHMRGVMHRDLKPQNLLVTKDGVLKVADFGLARAFCPPIRPLTHEVVTLWYRPPEILLGSQTYAPPMDMWAVGTIIVEMVTKKPMFPGDCEIDELFKIFRILGTPQDITWPGVSSLRdyntafpnwprldlakfvpgidEAGLHLTDACLKYAPNDRISAKTALSHAFF 290
                 56778*************************************************************************99.******9889************************************************************************************************************************************9999889************************************************997 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   1.9e-34   6.4e-31       3     202 ..      11     204 ..       9     222 .. 0.90

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 1.9e-34
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTT.SBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkes.aeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlg 202
                  g + GeGa+G V++g+ +    ++ + Va+K+++ + ++e   +  l+e++++k+l+hpniv+l  v  ++++l++v+e++++ dL+++L +  + +l+ k + +++lq+ +G+++ + + ++HrdL  +N L++++ v k++DfGLar        +  +++ + + + +pE+l  ++ +    D+W+ G+++ E++t  
  MMETSP0890-20130614|6482_1  11 KGASAGEGAYGVVYKGKDR----QTGQFVAMKKIRLElEDEGMPSTALREISLLKELQHPNIVELKDVLQSDGRLYLVFEFLDK-DLKRYLDSV-DGALKPKLVKSYTLQLLRGVAFCHMRGVMHRDLKPQNLLVTKDGVLKVADFGLARAF--CPPIRPLTHEVVTLWYRPPEILLGSQtYAPPMDMWAVGTIIVEMVTKK 204
                 56678************99....99999******65504555578999**********************************97.9*******9.*********************************************************..56777888888888888***98766549999**************954 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.9e-07     0.002     166     196 ..     125     154 ..      61     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.9e-07
                 -EEB-SS-SGGGEEEETTTTEE.EE---TT-B CS
  PF01636.18 166 pvllHgDlhpgNllvdpddgrv.gviDfedag 196
                 ++++H+Dl+p+Nllv+  ++ v  v Df++a+
  MMETSP0890-20130614|6482_1 125 RGVMHRDLKPQNLLVT--KDGVlKVADFGLAR 154
                 6899************..444448****9997 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.059      57     159 ..      52     144 ..      29     155 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
   PF06293.9  57 rsvrEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekak 159
                 ++ rE++llk+L+   +  +k v           +  l+ e l+  +dL+ +l + +  l+ +l +    ++ r +a  h +gv+H+dl ++n+l+ +++    
  MMETSP0890-20130614|6482_1  52 TALREISLLKELQHPNIVELKDVLQSDG------RLYLVFEFLD--KDLKRYLDSVDGaLKPKLVKSYTLQLLRGVAFCHMRGVMHRDLKPQNLLVTKDG---V 144
                 5666666666666666666666654333......3457777777..599999999776888888888888999999********************9987...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.84
# Mc/sec: 850.14
//
Query:       MMETSP0890-20130614|6483_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-47  161.0   0.0    1.5e-46  158.5   0.0    1.9  1  PF00069.20 Protein kinase domain
    5.2e-18   64.9   0.0    8.9e-18   64.2   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.14   11.0   0.0       0.24   10.3   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.0   3.2e-50   1.5e-46       1     260 []      41     360 ..      41     360 .. 0.82

  Alignments for each domain:
  == domain 1    score: 158.5 bits;  conditional E-value: 3.2e-50
                 EEEEEEEE----EEEEEEEET..TCCEEEEEEEEEGGGHHHHHHHHHHH........HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E..........EE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST..............HHHHHHHHHCCCHHTTS--GGGGCSHHH.......................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkk..ktgkkvAvKilkkeeekskkektavr........ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel..........kiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge..............seedqleliekilkkkleedepksssks.......................................eelkdlikkllekdpakRltaeeilkhpwl 260
                 ye+l+ lG+G+f++V++++    +  k +A+K++kk + ++ + + + +        E+  +++++H  i++l++++++ +++ylv+e+ e  dlf+++        e  +k+i++ ++ +l+++H++gi+HrD+KpeN+L+  + e           k++DFGl+    k++  lt++vg++ + APE++ +++++++ +D WslG +l+el+ g++ f+                       +++ + + k           +                                       e + +l++kll+ +p++R ++e++++ +w+
  MMETSP0890-20130614|6483_1  41 YEILRLLGEGEFASVWECRSLigDGTKSMALKAIKKCKVQRHACILKSKrnirrvnmEVFAMRQCNHAGICHLFDTMQSISKVYLVMEIGER-DLFTFIDdFPDGCPELIVKQIMRILALALRHCHQRGIAHRDIKPENLLICGNPEEwiqnsdagiiKLCDFGLCAR-IKPGLLLTDFVGSPGFFAPELMTRRQYDGALADAWSLGAVLIELCLGHNGFNAVwcppyerlhdvngfA----AGIFAAVHRLKFGG--------EyfirldsdsdsdgggmlmsnisinhkpprpaerrvirlsEPVLQLLDKLLQIEPERRASVEQVCTARWF 360
                 7899**************98632344589999999998887766554445677999**********************************99.*******6667779************************************7777789****************99.9**********************************************9555555444344333333221....11222222222222........1222233456677889999999999999999999999999***************************998 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0     2e-21   8.9e-18       3     200 ..      43     253 ..      41     269 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 2e-21
                 EEEEE-------EEEEEEET.TTTSSEEEEEEEEECT......TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET..........TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEE.HHHHHHH---HHHHHHT CS
  PF07714.12   3 lgkklGeGafGkVvegtlkg.ekekkevkVavKtlke......saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee..........ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEift 200
                 + + lGeG+f++V+e++    + +k+    a+K++k        +++++ +++  e+ +m++++h  i +l   + + +++++v+e  +  dL +f+ +   + +    + +++  +a ++++ +++ + Hrd+   N L++             ++k++DfGL+ +i   +     ++   +  ++apE+++++++    +D Ws G +l E++ 
  MMETSP0890-20130614|6483_1  43 ILRLLGEGEFASVWECRSLIgDGTKSMALKAIKKCKVqrhaciLKSKRNIRRVNMEVFAMRQCNHAGICHLFDTMQSISKVYLVMEIGE-RDLFTFIDDF-PDGCPELIVKQIMRILALALRHCHQRGIAHRDIKPENLLICGnpeewiqnsdAGIIKLCDFGLCARI---KPGLLLTDFVGSPGFFAPELMTRRQYDgALADAWSLGAVLIELCL 253
                 6788************988645555555567777754223333344556788888*********************99********765.69*******9.8888888888999999*************************8899999998778*************...233445667788899**********983569***********985 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.3e-05      0.24     102     155 ..     131     185 ..     123     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.3e-05
   PF06293.9 102 aqdLaeilakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeee 155
                  +dL +++ ++ +  +e + +++++ ++ + +  h++g++H+d+ + n+l+  + 
  MMETSP0890-20130614|6483_1 131 ERDLFTFIDDFPDgCPELIVKQIMRILALALRHCHQRGIAHRDIKPENLLICGNP 185
                 5789999999888888999999**************************9986654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.69
# Mc/sec: 1653.14
//
Query:       MMETSP0890-20130614|6488_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-06   26.2   0.0    8.9e-06   25.2   0.0    1.4  1  PF09409.5  PUB domain
    0.00038   20.1   0.0    0.00084   19.0   0.0    1.6  1  PF11470.3  GLUT4 regulating protein TUG
     0.0021   17.9   0.0     0.0075   16.2   0.0    1.9  2  PF00789.15 UBX domain


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     2e-09   8.9e-06       8      68 ..     225     280 ..     222     294 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2e-09
   PF09409.5   8 kaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeeeeeflv 68 
                 +a +i+ k+++  lk+Pn +    i l+Nk+fk++i s+e+++++++l+G+ +     f+ 
  MMETSP0890-20130614|6488_1 225 EATKIISKYVSAALKQPNVPP---ISLENKVFKSQIASSEDGLKIMRLAGWSTHA--GFFL 280
                 6899****************9...***************************9994..3444 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07   0.00084       4      65 .]      12      81 ..       9      81 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.8e-07
   PF11470.3  4 ynfrrvkvkvtpst.tl.tqVleeackkfkldsn.eytLkhnnkp.....ldlslpfRlanLpngakLeL 65
                ++++r ++k+++s  +l  ++leea+++f++++   y L   +       +dls  +  ++L n + L L
  MMETSP0890-20130614|6488_1 12 WQGHREEIKIEASRqPLrITILEEALRRFNIKTGkCYGLRRSRARkaeanVDLSIDWMHSGLMNKCELDL 81
                66677777776664244259**************8889999886667999****************9987 PP

>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   4.7e+03       4      21 ..      88     105 ..      86     115 .. 0.81
   2 !   16.2   0.0   1.6e-06    0.0075       8      68 ..     434     495 ..     431     503 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1
                 SSEEEEEEEE----EEEE CS
  PF00789.15   4 edvcrlqiRlpDGsrlvr 21 
                 + ++r+ + + DG++++ 
  MMETSP0890-20130614|6488_1  88 QGQVRIGVSCDDGTTFTA 105
                 678999999999999875 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.6e-06
                 EEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTS..EEEEESSSTEEETSCCSBCCCH CS
  PF00789.15   8 rlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeep..FkLltsfPrrlltksdktlsea 68 
                 rl i   D   l   F+   tv ++  +++ +++e+++   F+L++ +P+ +l+ s  +lse 
  MMETSP0890-20130614|6488_1 434 RLKIMIDDHMALALSFSTMRTVADLITWLEIECFESDDHinFDLYQIYPKSKLDSSH-SLSEF 495
                 6666666667778889999******************9999***************6.99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.76
# Mc/sec: 1813.03
//
Query:       MMETSP0890-20130614|6490_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-30  106.0   3.5    8.6e-28   97.1   2.4    2.4  1  PF10558.4 Mitochondrial 18 KDa protein (MTP18)


Domain annotation for each model (and alignments):
>> PF10558.4  Mitochondrial 18 KDa protein (MTP18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   2.4   6.3e-32   8.6e-28       8     165 ..      55     192 ..      38     193 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 6.3e-32
   PF10558.4   8 yasRlrtillsahRyvaYasdiGEafrpvvppalvkaaYgvswaYilgDvadkgykaalkneevlspeleaekkaeelakekaskaedvalvmvkravfqslASvalPaftIhsvvryskellkka...knkllrkwgpvalGLavvPllikliDepveea 165
                  + R + i + + RyvaY+sdiGE++rp+++p+ v+a+Yg+++ Y+l D+  ++ ++ l   +++                       + +++++r++f++  S+alPa++Ihs+v+ ++++l++     +++l ++gp+++GL+++P+l+ ++Dep+e++
  MMETSP0890-20130614|6490_1  55 LLLRAKSIASNSIRYVAYSSDIGESMRPLLRPWAVNATYGIAIGYVLLDAGFETRRKHLLGVDNDV----------------------LVATAAHRLIFHTAVSLALPAVIIHSAVHRAHHFLHQPmfeTMPRLIRYGPTVIGLSIIPFLP-IVDEPAEHI 192
                 2345556667789*************************************9999887766654444......................567899******************************887666677789**************9.68***9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.84
# Mc/sec: 633.32
//
Query:       MMETSP0890-20130614|6484_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0095   16.1   0.2      0.014   15.6   0.1    1.3  1  PF02465.13 Flagellar hook-associated protein 2 C-terminus
  ------ inclusion threshold ------
      0.014   15.1   4.1      0.021   14.5   2.9    1.2  1  PF11559.3  Afadin- and alpha -actinin-Binding
      0.015   15.1   0.1      0.028   14.2   0.1    1.5  1  PF06771.6  Viral Desmoplakin N-terminus
       0.03   14.3   1.7      0.045   13.7   1.2    1.3  1  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
      0.031   13.7   0.6      0.047   13.1   0.4    1.2  1  PF00489.12 Interleukin-6/G-CSF/MGF family
      0.033   14.2   0.2      0.048   13.7   0.2    1.2  1  PF13339.1  Apoptosis antagonizing transcription factor
      0.033   13.6   6.2      0.047   13.1   4.3    1.2  1  PF04156.9  IncA protein
      0.048   12.7   0.7      0.064   12.3   0.5    1.1  1  PF04582.7  Reovirus sigma C capsid protein
      0.048   13.6   1.0      0.077   13.0   0.7    1.3  1  PF03646.10 FlaG protein
      0.049   13.3   3.7      0.066   12.9   2.6    1.1  1  PF12718.2  Tropomyosin like
       0.05   13.2   0.2       0.14   11.7   0.1    1.8  2  PF12957.2  Domain of unknown function (DUF3846)
      0.065   12.2   0.5      0.077   12.0   0.3    1.2  1  PF06705.6  SF-assemblin/beta giardin
      0.075   12.6   0.1       0.14   11.7   0.1    1.5  1  PF08825.5  E2 binding domain
      0.076   12.6   4.1       0.12   12.0   2.8    1.2  1  PF07926.7  TPR/MLP1/MLP2-like protein
       0.12   12.3   0.1       0.23   11.4   0.1    1.5  1  PF04837.7  MbeB-like, N-term conserved region
       0.16   10.8   1.7       0.23   10.2   1.2    1.2  1  PF03265.10 Deoxyribonuclease II
       0.18   11.5   5.0       0.28   10.9   3.5    1.3  1  PF03938.9  Outer membrane protein (OmpH-like)
       0.21    9.6   2.2       0.27    9.3   1.5    1.1  1  PF07902.6  gp58-like protein
       0.22   11.8   1.7       0.39   11.0   1.1    1.3  1  PF09177.6  Syntaxin 6, N-terminal
       0.61   10.1   4.3       0.85    9.6   3.0    1.2  1  PF04576.10 Zein-binding
       0.75    9.3   4.2        2.2    7.8   3.0    1.7  2  PF02996.12 Prefoldin subunit
        3.2    7.5   9.6        2.6    7.8   1.5    2.3  2  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.2e-05     0.014      22      62 ..       8      46 ..       2      98 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.2e-05
  PF02465.13 22 drlkqqeqkleaklsaygtlksalsdlqsalkalkstsafn 62
                ++l   e+++e  +sa+++l+s+++dlqs++++l+++  ++
  MMETSP0890-20130614|6484_1  8 QKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQN--LQ 46
                5666778999999*********************664..22 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.9   3.4e-05     0.021      67     118 ..       2      53 ..       1      59 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.4e-05
   PF11559.3  67 eierlqskierlktqleqlerelallqekerqlekklktleqklknekeelq 118
                 +++  q+k++ l++q+e  ++ ++ lq++ ++l++ +++l+q l+++  +l+
  MMETSP0890-20130614|6484_1   2 TMQECQQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLN 53 
                 5778889999999999999999999999999999999999999999988775 PP

>> PF06771.6  Viral Desmoplakin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   4.5e-05     0.028       9      47 ..      28      64 ..      11      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.5e-05
   PF06771.6  9 aktvknLlkTintmskriktlsstedvlerirsiillyr 47
                ++tv++L  T+++ ++++  +++ +d + rir ii++ +
  MMETSP0890-20130614|6484_1 28 QSTVQDLQSTVQSLQQNL--QQQINDLNGRIRPIIVVND 64
                689********9999855..5899***********9866 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.2   7.3e-05     0.045      16      59 ..       3      46 ..       1      59 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.3e-05
   PF10046.4 16 leisaedlklLeklNeataekykeleqkakslekeleklkqkye 59
                +++ +++l+ Le+ Ne   + +++l+  +++l++++++l+q  +
  MMETSP0890-20130614|6484_1  3 MQECQQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQ 46
                788999******************************99987544 PP

>> PF00489.12  Interleukin-6/G-CSF/MGF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   7.6e-05     0.047      72     108 ..      19      55 ..       3      70 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.6e-05
                 TT----TT---HHHHHHHHHHHHHHHHHHHHHH.... CS
  PF00489.12  72 alqneleenkekvetlqldvktliqilkqkvkdldkv 108
                 + q  +++ + +v++lq  v+ l q+l+q+++dl+  
  MMETSP0890-20130614|6484_1  19 IWQSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLNGR 55 
                 456678899999*******************998755 PP

>> PF13339.1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   7.7e-05     0.048      39      79 ..       8      48 ..       2      83 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.7e-05
   PF13339.1 39 ealsefkegneelqealksaekalkklldtlleLreaLlee 79
                ++l+ + e+ne  q+a++++++++++l++t+ +L+++L+++
  MMETSP0890-20130614|6484_1  8 QKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQ 48
                4555566999*****************************63 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.3   7.6e-05     0.047     143     180 ..       7      51 ..       2      57 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.6e-05
   PF04156.9 143 akeirelr.......eeisdlkeevqelrselerlqedlqrlqek 180
                 ++++r l+       ++++dl+++vq+l+s++++lq++lq++ + 
  MMETSP0890-20130614|6484_1   7 QQKLRYLEeqneiwqSAVQDLQSTVQDLQSTVQSLQQNLQQQIND 51 
                 333333335557777889999999999999999998888888765 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5    0.0001     0.064      34      90 ..       7      63 ..       2      97 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0001
   PF04582.7 34 yerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalq 90
                +++l  le  ++  +++v+++ s++ dl++ +q + + l++ + +l++ ++ +  ++
  MMETSP0890-20130614|6484_1  7 QQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLNGRIRPIIVVN 63
                567778888888888888888888888888888888888888877777665554443 PP

>> PF03646.10  FlaG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   0.00012     0.077      27      69 ..      14      56 ..       2      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00012
  PF03646.10 27 eeeaeekeeskeelekaveklneflqslntsleFsvdeesgrl 69
                ee++e  ++ +++l++ v++l+  +qsl+++l+ ++++ +gr+
  MMETSP0890-20130614|6484_1 14 EEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLNGRI 56
                344444678999************************9999884 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.6   0.00011     0.066      16      64 ..       3      51 ..       1      55 [. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
   PF12718.2 16 aeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakek 64
                ++e+++kl+ le++ne     +++Lq  +q l++ v  l+++l+++ + 
  MMETSP0890-20130614|6484_1  3 MQECQQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQIND 51
                6899***************************************998665 PP

>> PF12957.2  Domain of unknown function (DUF3846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00022      0.14      14      61 ..      25      78 ..       9      96 .. 0.65
   2 ?   -2.2   0.0         5   3.1e+03      50      80 ..     181     214 ..     172     218 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00022
   PF12957.2 14 aeieaslealqalVggdievvsl..............ddgvslvvneeGklkglplNraata 61
                +++++++++lq+ V       +                 ++++vvn++G l +l  N + ++
  MMETSP0890-20130614|6484_1 25 QDLQSTVQDLQSTV-------QSlqqnlqqqindlngRIRPIIVVNDNG-LSCLADNVVTSD 78
                33444444444444.......3333333335555665889*********.899999998887 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 5
   PF12957.2  50 lkglplNraata...leeegdlqdpivGdvvllg 80 
                 ++  p N + +    ++e +   +  +G++v+ +
  MMETSP0890-20130614|6484_1 181 FDSTPHNFTFSLtfgFHENDLKDRHFHGNIVVHK 214
                 6667777777777777777777777888888765 PP

>> PF06705.6  SF-assemblin/beta giardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00012     0.077      82     126 ..      11      56 ..       1     104 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
   PF06705.6  82 qvadlqael.kkavdslserlndleslireerekrrddieklaksl 126
                 +  + q+e+ ++av+ l+++++dl+s ++  +++ +++i+ l+  +
  MMETSP0890-20130614|6484_1  11 RYLEEQNEIwQSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLNGRI 56 
                 4445555553789999999999999999999999999999988765 PP

>> PF08825.5  E2 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00023      0.14      39      75 ..      32      69 ..      12      76 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00023
   PF08825.5 39 qsppsleeatrpnLskkLkeL.vsdgqeivvtDeklpv 75
                q ++s  + +++nL++++++L  +   +ivv+D+ l++
  MMETSP0890-20130614|6484_1 32 QDLQSTVQSLQQNLQQQINDLnGRIRPIIVVNDNGLSC 69
                5567778999***********55556677889998887 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.8   0.00019      0.12      27      72 ..       7      53 ..       2      59 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00019
   PF07926.7 27 qklkdDlenqaeiareaqdkYerelikhaetiqeLtk.lkkelaelq 72
                q+  + le+q ei+++a ++ +++++   +t+q+L++ l+++ ++l+
  MMETSP0890-20130614|6484_1  7 QQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQnLQQQINDLN 53
                44455689999999999999999999999999999743777877776 PP

>> PF04837.7  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00037      0.23      13      49 ..      21      57 ..      17      60 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00037
   PF04837.7 13 qkskeqaeSteemvksafekheksvkeaLkesekkis 49
                q++ ++ +St + ++s  + + +++++++++   +i+
  MMETSP0890-20130614|6484_1 21 QSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLNGRIR 57
                567799************************9999987 PP

>> PF03265.10  Deoxyribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   0.00038      0.23      27      70 ..       5      48 ..       1      53 [. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00038
  PF03265.10 27 e.gleylyldsanetwelaaknindtesalgrTlkqlyksskkse 70
                e +++  yl+++ne+w+ a +++++t + l++T+++l  ++ +++
  MMETSP0890-20130614|6484_1  5 EcQQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQ-QNLQQQ 48
                4478899****************************995.444444 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.5   0.00045      0.28      30      70 ..       9      49 ..       1      58 [. 0.52

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00045
   PF03938.9 30 aspkykelqaklqeeakekqqelqakkkelqkeqknlqser 70
                +  +++e ++  q   + +q+++q+ +  +q +q+nlq++ 
  MMETSP0890-20130614|6484_1  9 KLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQI 49
                44444444444455555555555555555555555555543 PP

>> PF07902.6  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.5   0.00043      0.27     288     324 ..      21      57 ..       2      85 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00043
   PF07902.6 288 ednyssltqTvkGlqsevsdpnskiesrvtqLaslie 324
                 +  +  l+ Tv+ lqs+v++ +++++ +++ L++ i 
  MMETSP0890-20130614|6484_1  21 QSAVQDLQSTVQDLQSTVQSLQQNLQQQINDLNGRIR 57 
                 3667788888888888888888888888888888876 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   0.00062      0.39       8      63 ..       4      57 ..       2      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00062
   PF09177.6  8 eevqksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLeeavs 63
                +e+q++++ le+  + w++  +d +   +++ l++ +++  ++++++++dL+  ++
  MMETSP0890-20130614|6484_1  4 QECQQKLRYLEEQNEIWQSAVQDLQ--STVQDLQSTVQSLQQNLQQQINDLNGRIR 57
                6788888888888899998888877..77777777777777888888888877665 PP

>> PF04576.10  Zein-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0    0.0014      0.85      52      94 .]       4      46 ..       1      46 [. 0.92

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0014
  PF04576.10 52 mearqykrmaeekaeydeeelesledllakrekeiealekele 94
                 e +q  r++ee+ e  + +++ l++ +++ + ++++l+++l+
  MMETSP0890-20130614|6484_1  4 QECQQKLRYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQ 46
                4889999********************************9876 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.0    0.0035       2.2      80     117 ..      11      48 ..       2      51 .. 0.68
   2 ?    3.4   0.1     0.083        51       2      20 ..      39      57 ..      38      60 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHH CS
  PF02996.12  80 ellkkkleelekqlekleeeleklkdqittleanlaql 117
                 ++l+++ e  +++++ l+  +++l++++++l++nl+q 
  MMETSP0890-20130614|6484_1  11 RYLEEQNEIWQSAVQDLQSTVQDLQSTVQSLQQNLQQQ 48 
                 56666777777777777777777777777777777776 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.083
                TTTTHHHHHHHHHHHHHHH CS
  PF02996.12  2 keeleslqaeleqlkeaie 20
                ++ +++lq++++ l+ +i+
  MMETSP0890-20130614|6484_1 39 QSLQQNLQQQINDLNGRIR 57
                68899*********99986 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.6      0.05        31      26      51 ..       2      27 ..       1      28 [. 0.83
   2 ?    7.8   1.5    0.0042       2.6      28      50 ..      25      47 ..      21      51 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.05
  PF07716.10 26 keeeleervkeLeeeNaqLrqkveqL 51
                 ++e ++++ +Lee+N+  +  v+ L
  MMETSP0890-20130614|6484_1  2 TMQECQQKLRYLEEQNEIWQSAVQDL 27
                589*************9877776665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0042
  PF07716.10 28 eeleervkeLeeeNaqLrqkveq 50
                ++l+++v++L++  + L+q+++q
  MMETSP0890-20130614|6484_1 25 QDLQSTVQDLQSTVQSLQQNLQQ 47
                89******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1461  (0.106861); expected 273.4 (0.02)
Passed bias filter:                     1237  (0.0904769); expected 273.4 (0.02)
Passed Vit filter:                       293  (0.0214307); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:01.29
# Mc/sec: 471.84
//
Query:       MMETSP0890-20130614|6489_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00052   19.9   0.0    0.00069   19.4   0.0    1.2  1  PF00061.18 Lipocalin / cytosolic fatty-acid binding protein family


Domain annotation for each model (and alignments):
>> PF00061.18  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.1e-08   0.00069       1     108 [.      92     203 ..      92     217 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.1e-08
                 SEEEEEEEEECSSGGHHHHHHHTTEEEEEEEEEHTTEEEEEEEEEETTE......EEEEEEEEEEEEEEEEEEEEEEECTTEE...EEEEEEEESSSEEEEEEEEEET.STEEEEEEE CS
  PF00061.18   1 aGkWyliasandnsefeeeekklrvyiaeikpteegnlevteiekdggk......ceeesitakkteepgklgvefdeyldgr...kvkvlttdydnylilylkkdke.gkttlvael 108
                 +G W+l  s+n    f+e++ +++v+ +++++++  ++e ++++ ++g       c+ +   +    e++++g++  e +d r    vk ++++++ + il +  d++ g+    ++l
  MMETSP0890-20130614|6489_1  92 SGHWRLERSEN----FDEYLTSMNVSATHRSFATRATVEQRITRNTDGDlaafeiCVLNR--LGVKCESFTVGKKPLESSDARgdpIVKHIDWEDKAKRILRTRVDSSvGTLVDKRFL 203
                 69*********....*****************************6665558999888888..55666889999884444444444477777777777777777777666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:01.38
# Mc/sec: 446.28
//
Query:       MMETSP0890-20130614|6492_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-151  503.9   0.0   2.2e-151  503.6   0.0    1.1  1  PF04551.9 GcpE protein
     0.0062   16.0   0.0      0.015   14.8   0.0    1.6  1  PF07085.7 DRTGG domain


Domain annotation for each model (and alignments):
>> PF04551.9  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.6   0.0  3.2e-155  2.2e-151       1     358 [.      39     694 ..      39     695 .. 0.99

  Alignments for each domain:
  == domain 1    score: 503.6 bits;  conditional E-value: 3.2e-155
                 ---EE----EE------EEEEE--S-TT-HHHHHHHHHHHHH----EEEEEE-SHHHHHHHHHHHHH.....-SS-EEEEE-S-CHHHHHHHH-----B------......................--.HHHHHHHHHHHHH----EEE-EE-----HHHHHH----HHHHHHHHHHHHHHHHH-----EEEEEE---HHHHHHHHHHHHHH--.....--EEE--TT--------HHHH-----TTT-----EE----SS-HHHHH........................................................................................................................................................................................................................................................................................HHHHHHHHH--------EEEE--------S-HHHHHHHHHHHT----S--EEEEE---TTT----TTS-E-EE.-----EEEE----EEEEE.-S-HHHHHHHHHHHHH CS
   PF04551.9   1 trevkvGnvkiGgnapiavqsmtntdtedveatvkqikeleeaGcdivRvtvqsekeaealeeikeklkkkgieiplvadihfnaklalkaveavdkvRiNPGnivk..............eyeeelekieekvkelvekakelkvaiRiGvNhGSlskrilskygdtpeglvesalefaeileeldfedivlSlKasnvlvmieayrllaekld.....yplHlGvTeaGegeegriksaigigsLLaegiGdTiRvSltedpveEv........................................................................................................................................................................................................................................................................................kvaleiLqslrlrksktelisCPsCgRtlfdlqevakeiekrlkhlkeglkiavmGCiVNGpGEaadadlGivgsgkgkidlykkkelvkkvikeeeavdelielikek 358
                 t +v+vG vkiG++++ia q+m +tdt+dvea+v+qi ++ e G+++vR+tvq++ ea+a  +i++ l++ + ++plvadihf++k+a+ +++a++k+R+NPGn+++              e+e+e + iee +++lv k+kel++a+RiG+NhGSls+ri+s ygd+p g+vesa+efa+i++++d++++v+S+Kasn+ vm++ayrlla+k++     yplHlGvTeaGege+gr+ksaigig+LLa+g+GdTiRvSltedp+ E+                                                                                                                                                                                                                                                                                        ++++ +Lq +r+r++kte++sCPsCgRtlfdlqev++ i++r+ hl+ g++ia+mGCiVNGpGE+adad+G+vg+++gk+dly++ke+vk+ i++e a+d+l++like+
  MMETSP0890-20130614|6492_1  39 TCTVEVGPVKIGSDHKIACQTMGTTDTRDVEASVAQILKCVENGAELVRLTVQGTAEAKAAAKIRQMLDEGNHNVPLVADIHFQPKAAMLVADAFEKIRVNPGNFADgrktfeeidydspeEFEAERAYIEEIFTPLVLKCKELNRAMRIGTNHGSLSARIMSFYGDSPLGMVESAIEFANICRKHDYHNFVFSMKASNPVVMVSAYRLLAAKMYqlnwnYPLHLGVTEAGEGEDGRMKSAIGIGALLADGLGDTIRVSLTEDPEFELepcrtlaalgteaysdearekakkvpkfddtktrpiasiikrqvqlasfvndgekisalhrdgsvisalrasdlndeqalyralgcatavgmpfrdiatsdsiylvpgtatsldakqirtldrlaqaglgiivpqsdaaaltndkkiksshvfttvniqnyldapskqkivviqgdesddqiqtflehneqipcvfididisqlsrlhasrrfvhlakeasfpiihkltyntetaktpginllrkdlfilklgmdggsllvdalgdgvlvdapfdidflrSASFGLLQGSRMRNVKTEFVSCPSCGRTLFDLQEVTQMISERTGHLP-GVTIAIMGCIVNGPGEMADADFGYVGGAPGKVDLYVGKEVVKRGIPNEIACDALVDLIKEY 694
                 678******************************************************************************************************9669*********************************************************************************************************99*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************.**********************************************************986 PP

>> PF07085.7  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-06     0.015      21      98 ..     454     540 ..     438     543 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.2e-06
   PF07085.7  21 vekvvigamsvenvleylkegdlvitpgDRediqlaaleag...laalilT......gglepseevlklaeeaglpvlsteydtftt 98 
                  ++ v+ + +++n+l+  +++++v+++gD +d q+++ + +   + ++ +       + l+ s + ++la+ea+ p++   +   +t
  MMETSP0890-20130614|6492_1 454 KSSHVFTTVNIQNYLDAPSKQKIVVIQGDESDDQIQTFLEHneqIPCVFIDidisqlSRLHASRRFVHLAKEASFPIIHKLTYNTET 540
                 578899999****************************99999**7777775222223678899999999999999999754444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.41s 00:00:01.42 Elapsed: 00:00:01.00
# Mc/sec: 1739.76
//
Query:       MMETSP0890-20130614|6499_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-32  110.1   0.0    1.3e-31  108.9   0.0    1.6  1  PF03109.11 ABC1 family
     0.0018   17.9   0.3      0.016   14.8   0.2    2.5  1  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.024   13.7   0.0      0.044   12.8   0.0    1.3  1  PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
        1.2    9.0   6.8        2.6    8.0   0.1    4.1  4  PF12277.3  Protein of unknown function (DUF3618)


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   3.7e-35   1.3e-31       5     119 .]     224     341 ..     220     341 .. 0.96

  Alignments for each domain:
  == domain 1    score: 108.9 bits;  conditional E-value: 3.7e-35
  PF03109.11   5 kpveevFaefdeePlAaASiaQVHrAvlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskea...rldleelvdelskelaeeldfkrEAknaekfrenfaklkevkvPkvy 119
                 k+++++F  fde+PlAaAS+aQVHrA+l +g eV+vKvqr g+k+ i +D+++++++a l++++ +e      ++  +++ +++ l++e+df+ E +n e f++n+a+l++vkvP+ y
  MMETSP0890-20130614|6499_1 224 KDISQIFVRFDEKPLAAASLAQVHRAQLLDGTEVVVKVQRDGLKEMIGVDFRNIRWVAALADRLDPEEegvSSNWLGIAKSAETVLWKEIDFRIERANCELFQQNMANLPYVKVPNTY 341
                 5799**************************************************************99877789999**************************************976 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   4.7e-06     0.016     148     199 ..     374     426 ..     228     440 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE...TTTTEEEE---TT-BBE- CS
  PF01636.18 148 leervlaalaallpgaeppvllHgDlhpgNllvd...pddgrvgviDfedaglgp 199
                 ++   ++   + l +  ++++ H+D+hpgN+ vd   pd gr+   Df+++   p
  MMETSP0890-20130614|6499_1 374 AAL-SARLTTSYLEQLCRHGFFHCDPHPGNVAVDnlyPD-GRIIYYDFGMCDRIP 426
                 333.344444444446799***************99766.565377999997665 PP

>> PF06176.6  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05     0.044     113     170 ..     343     407 ..     327     424 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.3e-05
   PF06176.6 113 ryvkvyimlieyieGvelndlpeise......dlkdkikes.ikelhehgmvsGdphkGnfivse 170
                 ++ +  ++++ey++G +++d  ++++       l +++  s +++l +hg+   dph Gn  v++
  MMETSP0890-20130614|6499_1 343 NFSSERVLVMEYVQGRKITDPSILDDpdidgaALSARLTTSyLEQLCRHGFFHCDPHPGNVAVDN 407
                 788999*********998875544432121135788998875799***************99986 PP

>> PF12277.3  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3      0.41   1.4e+03      13      25 ..     155     167 ..     152     168 .. 0.79
   2 ?   -0.1   0.1      0.25   8.6e+02      25      33 ..     282     290 ..     280     291 .. 0.85
   3 ?    0.4   0.0      0.17   5.9e+02      28      48 ..     463     483 ..     462     484 .. 0.86
   4 ?    8.0   0.1   0.00075       2.6       4      23 ..     494     513 ..     491     515 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.41
   PF12277.3  13 ertRaeLaeTvde 25 
                  ++R++La+++ e
  MMETSP0890-20130614|6499_1 155 IEARRQLASDLKE 167
                 6899999998865 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.25
   PF12277.3  25 eLaarlsPr 33 
                 +La+rl+P+
  MMETSP0890-20130614|6499_1 282 ALADRLDPE 290
                 8*******7 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.17
   PF12277.3  28 arlsPrrladrakervkarvg 48 
                 +r+s +r+a++ + ++ ++v+
  MMETSP0890-20130614|6499_1 463 DRFSIERIARDYVNTFADTVS 483
                 79*********9999888775 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.00075
   PF12277.3   4 dpdeierdIertRaeLaeTv 23 
                 +p+e +++  r+Ra L++++
  MMETSP0890-20130614|6499_1 494 SPEEVKAERRRRRAKLGADL 513
                 8****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.38s 00:00:01.41 Elapsed: 00:00:00.95
# Mc/sec: 1783.39
//
Query:       MMETSP0890-20130614|6496_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1726.79
//
Query:       MMETSP0890-20130614|6502_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-40  136.6   0.4    4.2e-40  136.2   0.3    1.2  1  PF00411.14 Ribosomal protein S11
  ------ inclusion threshold ------
      0.075   11.8   0.0      0.095   11.4   0.0    1.1  1  PF10009.4  Uncharacterized protein conserved in bacteria (DUF2252)
       0.11   12.2   0.0       0.15   11.8   0.0    1.4  1  PF04268.7  Sarcosine oxidase, gamma subunit family


Domain annotation for each model (and alignments):
>> PF00411.14  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   0.3   9.3e-44   4.2e-40       2     110 .]      29     146 ..      28     146 .. 0.99

  Alignments for each domain:
  == domain 1    score: 136.2 bits;  conditional E-value: 9.3e-44
  PF00411.14   2 iahiqasfnntiititDvkGrvvlsssaGslgvkasr.ksspyaaktaaekvakkalekgikavevkikg........pgiGkeaalralkksgliisqiedVtplphngcRkpkkrR 110
                 +ahi asfn+t++++tD++Gr++l++++G+++vka+r ++spyaa++aa++va +++e g++a+++ki++        pg+G+++alral+++g++i++iedVtp+p +++R++  rR
  MMETSP0890-20130614|6502_1  29 VAHIFASFNDTFVHVTDLSGRETLVRITGGMKVKADRdEASPYAAMLAAQDVAVRCKELGVTALHIKIRAtggnktkaPGPGAQSALRALARAGMKIGRIEDVTPIPSDSTRRKSGRR 146
                 79*****************************************************************************************************************998 PP

>> PF10009.4  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.1e-05     0.095     273     333 ..      20      80 ..       5      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.1e-05
   PF10009.4 273 enegeRvvegqrllqaasDlfLgwteldgrsfyvRelrpmkvsldlekldkkelkeyaklc 333
                   ege v +++ ++ +  D+f + t+l+gr+ +vR +  mkv++d ++ ++ +++ +a+ +
  MMETSP0890-20130614|6502_1  20 VAEGENVFAVAHIFASFNDTFVHVTDLSGRETLVRITGGMKVKADRDEASPYAAMLAAQDV 80 
                 5799******************************************999887777766655 PP

>> PF04268.7  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05      0.15      44      81 ..      20      58 ..       4     100 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.2e-05
   PF04268.7 44 vidpegkelaaalaealae.lasvvdlShgrvlieisGa 81
                v+++e+  ++a++++++++    v+dlS++ +l++i+G 
  MMETSP0890-20130614|6502_1 20 VAEGENVFAVAHIFASFNDtFVHVTDLSGRETLVRITGG 58
                44455555689999*****788***************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 733.58
//
Query:       MMETSP0890-20130614|6503_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-46  155.8   0.0      6e-46  155.2   0.0    1.3  1  PF08954.6  Domain of unknown function (DUF1900)
    6.6e-23   79.5   5.0    3.4e-08   32.9   0.1    4.1  4  PF00400.27 WD domain, G-beta repeat
    2.1e-16   59.2   0.0    3.8e-16   58.3   0.0    1.5  1  PF08953.6  Domain of unknown function (DUF1899)
     0.0036   15.4   0.0     0.0059   14.7   0.0    1.4  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF08954.6  Domain of unknown function (DUF1900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0   1.8e-49     6e-46       3     133 ..     257     392 ..     255     395 .. 0.93

  Alignments for each domain:
  == domain 1    score: 155.2 bits;  conditional E-value: 1.8e-49
   PF08954.6   3 aseelDtssgvlipfyDedtsllylagkGdtniryyevede..epyllelsefkssepqkglaflpkraldvkkcEiaralkltksk....iepvsfivpRkkselfqeDlYpdtaatepaltaeeWlsGknkqpkk 133
                  +++lD+++gv+ip+yD dts+lyl+gkGd+niryyev++e  +  +  lse++s+++ kg+ f+pkr+l+v+ cE ar+lkl+++     +ep+sfivpRk s+ fqeD++p+t++ +pa+ta+eWl+G++k p k
  MMETSP0890-20130614|6503_1 257 FKVDLDQAAGVIIPYYDVDTSILYLCGKGDGNIRYYEVNTEnkRSPIFALSEYRSTTAAKGCSFIPKRGLNVMACETARCLKLVSQGgqgaVEPLSFIVPRK-SDAFQEDIFPPTFNGNPAVTADEWLAGASKFPPK 392
                 5789**********************************8774356899************************************9966678***********.9**************************9987765 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   9.9e-12   3.4e-08       7      38 ..      75     107 ..      72     108 .. 0.96
   2 !   28.6   0.1   2.2e-10   7.7e-07       2      39 .]     120     158 ..     119     158 .. 0.96
   3 !   17.7   0.0   6.1e-07    0.0021       6      37 ..     167     198 ..     162     200 .. 0.90
   4 ?   -2.2   0.0       1.2   3.9e+03      17      30 ..     222     235 ..     220     248 .. 0.58

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 9.9e-12
                 EESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                 + gH+++V +++f+p   ++las+S+D ti++W
  MMETSP0890-20130614|6503_1  75 IGGHKGAVLDLDFNPFhEHILASCSDDTTIKIW 107
                 68******************************* PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.2e-10
                 EEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 e++  l+gH   Vt ++f+p+  ++l s S+D+t+++Wd
  MMETSP0890-20130614|6503_1 120 EPLVDLHGHGRKVTLIKFHPTaNSVLGSVSADHTLKIWD 158
                 68889*********************************9 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 6.1e-07
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirl 37 
                 + + H + + ++a++ dg++ a++++D+ +r+
  MMETSP0890-20130614|6503_1 167 SGETHPDLIQDIAWNYDGSYYATSCKDKIVRV 198
                 667899************************98 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 1.2
                 EEEESSSTEEEEEE CS
  PF00400.27  17 vafspdgpllasgS 30 
                 ++f  d p ++s +
  MMETSP0890-20130614|6503_1 222 LSFLGDKPQFISVG 235
                 67777777777766 PP

>> PF08953.6  Domain of unknown function (DUF1899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   1.1e-19   3.8e-16       2      65 .]       4      66 ..       3      66 .. 0.97

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1.1e-19
   PF08953.6  2 vvRsSkfRhVfGqpakkeqcyenirisksawdsnliavnpkflaviveasgGGaflVlPlnktG 65
                +vR+Sk+RhVf +p kke++y++ r+s+ + ++++i+ n+kf+a++++ +gGG+++++ ++++G
  MMETSP0890-20130614|6503_1  4 FVRNSKYRHVFVDPPKKEETYTGFRLSTATGEQSYIKGNTKFFALALQ-GGGGPVAIVDYKDKG 66
                8**********************************************7.89*******999987 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-06    0.0059     230     278 ..     141     192 ..     131     264 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.7e-06
   PF11715.3 230 gqtfvftlsrDgkLRvWnletgqclrttdil....eaaellpadslsyipeps 278
                  ++++ ++s+D++L++W++e g+ + +++      + +   + d ++y+++++
  MMETSP0890-20130614|6503_1 141 ANSVLGSVSADHTLKIWDIEKGCEIFSGETHpdliQ-DIAWNYDGSYYATSCK 192
                 577888*****************9666665555542.2223334555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1677.45
//
Query:       MMETSP0890-20130614|6504_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-25   88.4  15.5    2.5e-24   85.3   7.6    2.4  3  PF01699.19 Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.061   12.7   0.1       0.13   11.6   0.1    1.5  1  PF05084.8  Granule antigen protein (GRA6)
       0.14   11.4   1.9       0.24   10.6   1.0    1.7  1  PF06570.6  Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0031        14     117     138 ..      13      34 ..       2      35 .. 0.86
   2 ?   -0.8   0.0       0.2   9.3e+02      84     111 ..     118     145 ..     114     147 .. 0.68
   3 !   85.3   7.6   5.5e-28   2.5e-24       1     135 [.     143     272 ..     143     276 .. 0.98

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0031
  PF01699.19 117 dgrltvweglvllllyilylvl 138
                 +  l++++++++l++y++yl +
  MMETSP0890-20130614|6504_1  13 RQALSRLTSCMMLFVYVVYLNF 34 
                 67799**************976 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.2
  PF01699.19  84 ekriqkvlvfkvtldfsflllvllllll 111
                 +k++++ + ++++ld+ +l l+++ +++
  MMETSP0890-20130614|6504_1 118 HKEKSHDDEYVLQLDVALLWLAIITIII 145
                 5557777888888888888888665554 PP

  == domain 3    score: 85.3 bits;  conditional E-value: 5.5e-28
  PF01699.19   1 llislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll...sdgrltvweglvllllyily 135
                 ++i++l+++l  s+e +a++l+++++++g++ll+++++a+E++++i++a++ ++dla++ ++GSa++++l+v++l+vli+++         +++++l+f+++ +++++l +i+++   + g++++++gl+l+++yi++
  MMETSP0890-20130614|6504_1 143 IIIAILSEFLTGSLEGFAESLKIPDAFVGFVLLPIVGNAAEHATAISMAYRSKMDLAVAVALGSATQIALFVLPLMVLIGWI--------INQPLDLAFGTFQTAMTALSVIIVNsiaQQGEIHYLNGLCLVVAYIII 272
                 689*******************************************************************************........69********************************************96 PP

>> PF05084.8  Granule antigen protein (GRA6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.9e-05      0.13       2     106 ..       4     100 ..       3     129 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.9e-05
   PF05084.8   2 angrillrrkrafsPltvstlavvlvvfmGvllsslGavavaadsesvkatrsetgssGeqqeavGtsedyvnsselaGsrddslaeddeeaeevegdvdPfsvl 106
                 an  i l+ ++a+s lt  ++  v+vv++   lss  ++ v  + + ++ + +et+ss  ++       ++ +   la   +      +e+ +++e+ v P s  
  MMETSP0890-20130614|6504_1   4 ANAEITLKGRQALSRLTSCMMLFVYVVYLNFQLSSHSTIFVETEID-IE-NTQETASSQPRPA------NFADVVLLALDAGRRFITSEEKQADIETTVSPTSKS 100
                 8999********************************9998877765.44.4455555544433......333444455555555566666667777777776655 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   5.2e-05      0.24      65     123 ..     114     180 ..     101     254 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
   PF06570.6  65 kkkkekkrskenpwlmaldnsLlllgifallngitalfskkkqsas........GlitlllvslvgG 123
                 +   +k++s ++  ++ ld +Ll l+i++++++i+  f + + +          +++ ++l+ +vg 
  MMETSP0890-20130614|6504_1 114 QFTRHKEKSHDDEYVLQLDVALLWLAIITIIIAILSEFLTGSLEGFaeslkipdAFVGFVLLPIVGN 180
                 33334444445788999*****************995544221111122223334444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.75
# Mc/sec: 936.18
//
Query:       MMETSP0890-20130614|6506_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   19.2   4.8    0.00073   18.9   2.5    1.6  2  PF08598.6 Sds3-like
  ------ inclusion threshold ------
        3.9    7.4   6.1        5.9    6.8   0.3    2.6  2  PF13374.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08598.6  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.5   1.1e-07   0.00073      63     116 ..      32      85 ..       7      88 .. 0.87
   2 ?   -2.6   0.0      0.43   2.9e+03     177     204 ..      98     125 ..      87     126 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.1e-07
   PF08598.6  63 rldeeyklerieseyaeeiekakqeyeklvkllkerlinkleekikrLeeeres 116
                   + ey+ +++es y++ei+ a+  ye+ v+ ++e l+  l  k+++Le  r +
  MMETSP0890-20130614|6506_1  32 DCFFEYQKSNYESLYQYEIKEAEALYEQGVEACREHLLARLDFKRRKLEAARDL 85 
                 5789*********************************************98865 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.43
   PF08598.6 177 skapsrrlpaagn....lqslkdeeileDlaa 204
                 +k ++++     n    l  l   ei +Dl+ 
  MMETSP0890-20130614|6506_1  98 GKPKKGNS----NasalLHLLPATEIRNDLRE 125
                 43344422....12334777889999999876 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3   0.00086       5.9      19      36 ..      51      68 ..      49      68 .. 0.91
   2 ?    3.3   0.7     0.011        72       8      33 ..      69      94 ..      67      98 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00086
   PF13374.1 19 eeAlaleeealairrrll 36
                 eA+al+e+ ++ +r++l
  MMETSP0890-20130614|6506_1 51 KEAEALYEQGVEACREHL 68
                69*************996 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.011
   PF13374.1  8 LAlalrargryeeAlaleeealairr 33
                LA++ ++r+++e+A++l  + l  ++
  MMETSP0890-20130614|6506_1 69 LARLDFKRRKLEAARDLTKDRLRAYE 94
                89999***********9766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.88
# Mc/sec: 618.15
//
Query:       MMETSP0890-20130614|6507_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-07   30.3   0.0    2.9e-07   30.0   0.0    1.1  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.012   14.9   0.0    1.2  1  PF03665.8  Uncharacterised protein family (UPF0172)
      0.042   11.9   0.0      0.057   11.5   0.0    1.1  1  PF03387.9  Herpesvirus UL46 protein
      0.087   12.3   0.5       0.28   10.7   0.1    1.8  2  PF13108.1  Protein of unknown function (DUF3969)


Domain annotation for each model (and alignments):
>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   8.6e-11   2.9e-07       3      86 ..      29     104 .]      27     104 .] 0.84

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 8.6e-11
  PF01398.16   3 vqavhleslvllkildhalrtekeevmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklrgrervVGW 86 
                 v+ v+++ l+llk ++h +++ ++ v+G l+G+ ++   +e+t+++ +p +++ek        q  ++++ll +++ + + +GW
  MMETSP0890-20130614|6507_1  29 VKEVIIDGLALLKLVKHCTESLPNIVAGALLGLDSNS-KLEVTHCIPIPDNDEEKV------FQL-EMMKLLREINVDNNCIGW 104
                 899********************************99.***********9999887......222.344666666666777777 PP

>> PF03665.8  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.5e-06     0.012       3      49 ..      31      75 ..      29      98 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.5e-06
   PF03665.8  3 eveiseeAYaKllLHaakypaqaVnGlLvgkskksssevlitDavPL 49
                ev i+  A++Kl+ H+     + V G L+g  ++s+  +++t ++P+
  MMETSP0890-20130614|6507_1 31 EVIIDGLALLKLVKHCTESLPNIVAGALLGLDSNSK--LEVTHCIPI 75
                7889999***********************988777..7*******7 PP

>> PF03387.9  Herpesvirus UL46 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05     0.057     284     325 ..      12      54 ..       7      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.7e-05
   PF03387.9 284 lsalWeeskwksgteg.vkeaivaaveLvtlvhhhlqyllNli 325
                 ls++W++s+ k+ ++g vke i+  ++L+ lv+h    l N++
  MMETSP0890-20130614|6507_1  12 LSSAWTSSAEKKDEDGrVKEVIIDGLALLKLVKHCTESLPNIV 54 
                 899*******************************999999987 PP

>> PF13108.1  Protein of unknown function (DUF3969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.19   6.6e+02      50      64 ..      25      39 ..      17      71 .. 0.72
   2 ?   10.7   0.1   8.1e-05      0.28      30      53 ..      77     100 ..      69     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.19
   PF13108.1 50 lseeLieIIhkGmeL 64
                 + +++e+I +G +L
  MMETSP0890-20130614|6507_1 25 EDGRVKEVIIDGLAL 39
                566677777777665 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.1e-05
   PF13108.1  30 deaesllFspeilellkenslsee 53 
                 d+ e+ +F++e+++ll+e +++++
  MMETSP0890-20130614|6507_1  77 DNDEEKVFQLEMMKLLREINVDNN 100
                 778999***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 422.41
//
Query:       MMETSP0890-20130614|6509_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   12.6   3.6      0.052   12.4   2.5    1.0  1  PF09073.5 BUD22


Domain annotation for each model (and alignments):
>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.5   3.8e-06     0.052     224     291 ..      38     103 ..       6     112 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.8e-06
   PF09073.5 224 q......desddeeesesesesdeedeedsdsrsvsdseeseppskkaKkkkaktsstfLPsLmgGyfsgsede 291
                 +      de++++  ++ e+ sd +d  +++s+  sd+ ++ pp kk+K+++       LPs   G  +gs++ 
  MMETSP0890-20130614|6509_1  38 EdsplggDELTEDTVEALEKNSDASDGYSDASDGYSDA-SELPPLKKKKTSE-------LPSQNSGAAEGSSSG 103
                 03344435666666666666655555555554444444.5669999999888.......************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|6508_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   51.7   0.0    3.9e-09   35.7   0.0    2.6  3  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.054   13.3   0.6       0.12   12.2   0.4    1.6  1  PF07464.6 Apolipophorin-III precursor (apoLp-III)
      0.083   10.3   0.1       0.11    9.8   0.1    1.3  1  PF05478.6 Prominin


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   8.5e-13   3.9e-09       1      45 [.      15      59 ..      15      63 .. 0.95
   2 !   20.9   0.0   3.5e-08   0.00016       3      46 ..      42      85 ..      42      86 .. 0.94
   3 ?   -1.7   0.0      0.42   1.9e+03      15      28 ..     104     117 ..      91     118 .. 0.76

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 8.5e-13
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyas 45
                ++E+vle+++ n  + +y+++ L+ + ++vlkAv +n+ a+ +a+
  MMETSP0890-20130614|6508_1 15 NEEFVLELIEENATIMEYVNKDLRYNADFVLKAVARNPRAFWHAP 59
                79*****************************************99 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 3.5e-08
   PF13475.1  3 EivleavkkngsalkylseeLknDkeivlkAvkqngsalsyase 46
                ++vl+av +n+ a+ +++ +L++D  i+  Av ++g  l+  s+
  MMETSP0890-20130614|6508_1 42 DFVLKAVARNPRAFWHAPMSLQQDEKIIVGAVAKYGADLRETSK 85
                8***********************************98887776 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.42
   PF13475.1  15 alkylseeLknDke 28 
                 a+++l ee+ +D+e
  MMETSP0890-20130614|6508_1 104 AIEELREEIEHDRE 117
                 56677788888887 PP

>> PF07464.6  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   2.6e-05      0.12      46     106 ..      76     139 ..      59     158 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.6e-05
   PF07464.6  46 lkasLdealkdangkak...ealeqlrekiEktaeelrkahPevekkAqelrdklqaavqstvq 106
                   a L e  kd+ + ++    +l+ +r+ iE+ +ee+ ++  +  ++A+  +d+l a++  + +
  MMETSP0890-20130614|6508_1  76 YGADLRETSKDKAPTMSyymRVLASSRTAIEELREEIEHDRENFAAQAKLREDALNAKIAELTT 139
                 556666666676666653336899*********************************9987766 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   2.4e-05      0.11     647     717 ..      72     142 ..      28     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.4e-05
   PF05478.6 647 elkneakdlrslqqnlveplesllekLnssvksLdekssklqeavkdvLaeveaaeaflnnnaseivnees 717
                 ++ + + dlr+  +++++++  ++  L ss + ++e +++++   +++ a+++  e+ ln+++ e+  +++
  MMETSP0890-20130614|6508_1  72 AVAKYGADLRETSKDKAPTMSYYMRVLASSRTAIEELREEIEHDRENFAAQAKLREDALNAKIAELTTNVV 142
                 56677899******************************************************999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 902.63
//
Query:       MMETSP0890-20130614|6510_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   11.9   1.2       0.42   10.2   0.8    1.9  1  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   3.1e-05      0.42      20     111 ..     451     543 ..     435     545 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.1e-05
                 SEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTTTSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHH...SHHHHHHHH CS
  PF00787.19  20 syylievelktgakewtvkRrYsdFeeLhskLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrk...sevltsFLe 111
                 + yl+ v+l+    ++ ++RrYs+Fe L +k+ +    l +    +++  ++ r+k  + ++k    L  +L + + h  +++   se++++FLe
  MMETSP0890-20130614|6510_1 451 AEYLVVVKLRF--VTFGLWRRYSHFELLANKIISLNRPLDFENTLGSWRCVKRRQKWCRCLDKDYIVLKCFLLERFLHDAVFEstsSEIFLDFLE 543
                 45666666665..4889*************99988874444433333333333333334444444444444333333333333345667777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.14s 00:00:00.98 Elapsed: 00:00:01.12
# Mc/sec: 1181.06
//
Query:       MMETSP0890-20130614|6511_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-09   37.7   0.0    2.6e-09   36.4   0.0    1.7  1  PF03184.14 DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.073   12.6   0.0       0.15   11.6   0.0    1.5  1  PF13768.1  von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF03184.14  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   3.7e-13   2.6e-09       2     208 ..     238     451 ..     237     460 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.7e-13
  PF03184.14   2 ppedifnldEtglfykllldkavvesss..kekrevkgkkrgkerltvvlcanaagseklpplvigkgknprsfkn.............ekkkkkldveyksnkkawltseifeeWLekvfdprlk..aegrkvlLvlDgsgsHrtvelkakcklqniklvylPassssllqPldqgviselKarYrrqllkallalqesiskeqkkltlldalkfiakAwnav 208
                 +p +i nldEt  f+++  +k  +++     +  +  g  +++++  +v  +   ++    p +i+  k++ +                e + +++++ ++ +++++ t ++f ++L k +d++l     ++ v+ + D++ s ++v + ++ k+    l++ P+++s++lq ldq   +++  rY +       +l+++++    +++  d+++ +a+ w++ 
  MMETSP0890-20130614|6511_1 238 DPRRIVNLDETPAFVDFADNKGNAKTKRvaGKDDKCIGVSTENRECNTVTMCWGLDGFNYGPQIIVAKKTITEGLAvdalkvfkdeiheEFHCSTFGI-ISNTQYGVQTGDTFLDYL-KKLDRELSarGINEEVVVLSDSHASRKDVRVLQYAKDHRMRLFFEPPQTSHFLQSLDQYN-RQFHCRYNKAK----NNLKKQLDR---NMNTGDFISLVARIWKDW 451
                 57899************999875555441133334455555566666666668888899999999999999998888999888877653333333333.455678999*********.99***9998999*********************************************975.55555554433....333333333...667799999999999865 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05      0.15      83     127 ..     351     393 ..     339     413 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.2e-05
   PF13768.1  83 gaLkealrqpakpgearhvlllsdgsstsgaervlqliraaarki 127
                  +Lk++ r ++ +g+ ++v++lsd+++ +++ rvlq++++++  +
  MMETSP0890-20130614|6511_1 351 DYLKKLDRELSARGINEEVVVLSDSHASRKDVRVLQYAKDHR--M 393
                 56777777778899************9999*********995..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1379  (0.100863); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:01.80
# Mc/sec: 901.30
//
Query:       MMETSP0890-20130614|6515_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   27.4   0.1    2.4e-06   26.9   0.1    1.3  1  PF05699.9 hAT family dimerisation domain


Domain annotation for each model (and alignments):
>> PF05699.9  hAT family dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.8e-10   2.4e-06       8      80 ..      60     132 ..      56     136 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.8e-10
   PF05699.9   8 elpvlrrneefdvlewwk.qnssryPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallci 80 
                 e  ++r+++  + ++ wk      +P l ++a ++    v sa  Er+  + + ++++ rn+l++++v++ll+ 
  MMETSP0890-20130614|6515_1  60 E-VIMRQKKMSNCVNEWKvSGTAQFPRLAQIAVRLAQAAVQSADVERVCKAHKIIHSKARNRLKSQSVQQLLFC 132
                 5.777887777888888889999*************************9999999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.95
# Mc/sec: 464.14
//
Query:       MMETSP0890-20130614|6512_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.8   0.2       0.23   11.0   0.2    1.3  1  PF11770.3 GRB2-binding adapter (GAPT)


Domain annotation for each model (and alignments):
>> PF11770.3  GRB2-binding adapter (GAPT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   1.7e-05      0.23      18      79 ..      41     101 ..      37     118 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
   PF11770.3  18 lllllvlcgigcvwhwkrreatrftlpkflqrrssrkkdvtktvslsarvigprhkisvetk 79 
                 +l +l++  ig  w w+ ++a++   p++ ++rs  +    ++ s  ar+ g + ++ +e++
  MMETSP0890-20130614|6512_1  41 VLCVLLILIIGFLWLWQSETALKKISPRLAKKRSELRYREHRSHSKFARL-GQEFEAHLESD 101
                 567788888************************99888777777666664.55555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       716  (0.0523698); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:00.72
# Mc/sec: 1461.11
//
Query:       MMETSP0890-20130614|6518_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-38  130.4   0.0    1.1e-36  126.2   0.0    2.0  2  PF00202.16 Aminotransferase class-III


Domain annotation for each model (and alignments):
>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0   8.1e-41   1.1e-36     139     317 ..      23     209 ..       9     218 .. 0.87
   2 !    2.0   0.0     0.005        68     322     338 ..     286     302 ..     278     303 .. 0.90

  Alignments for each domain:
  == domain 1    score: 126.2 bits;  conditional E-value: 8.1e-41
                 ----TTEEEE-TT-TTC.-BHHHHHHHHHHHHHHHHTCCCE..EEEEE-SEE-----EE--CCCHHHHHHHHHHCT-EEEEE-S---------......-SGGGG-----SEEEE-CTC------EEEEE-HHHHTTSHH--...-SSTT-HHHHHHHHHHHHHHHHTTHHHHHHH---TTTHHHH.HHH CS
  PF00202.16 139 gpllpgveilpypdlka.aeeekalleeaerlikevkkeei..aAvivEPiqgegGvvvasegflaklreickkhnvllivDEvqtGfGrtGk......lfAaehagvepDlmtlaKaltgGlplsavlataevmqafqpgs.hgttfggnplacavalavlevieeeellenaqekgerlkkgLe.eLk 317
                 +p    v+ ++ pd+++ ++++kal+  +er   +++++    aA++vE   + +Gv+v+++++l+++ +  +k++ + i DE+qtG+Grt +      ++A+e+  vepD++tl+K l++G+p+++v++t+++++af++g  + +tfggnp+ ca+al vl+++e++ l +na ++g++lk++L  eL 
  MMETSP0890-20130614|6518_1  23 KPK--YVQAANIPDTYRgRASAKALVTDIERAAIHLENDGHglAAIFVESFMSVAGVIVPPPTYLQQAFKYVRKRGGVCICDEIQTGLGRTADtdfpniWYAFERHQVEPDIVTLGKPLGNGMPIACVVTTRKIADAFATGPeYFNTFGGNPVCCAAALVVLDLVEDS-LRKNAIRVGTYLKQRLTqELC 209
                 333..45677888888877888888888888887777765555************************************************9755555579*************************************9988899********************999.****************86665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.005
                 TEEEEE-----EEEEEE CS
  PF00202.16 322 vikevRgkGlliaielv 338
                  i++vRg+Gl ++ie+v
  MMETSP0890-20130614|6518_1 286 TIGDVRGAGLYLGIEFV 302
                 599************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.66
# Mc/sec: 1390.61
//
Query:       MMETSP0890-20130614|6517_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-61  207.0   0.0    3.4e-61  206.7   0.0    1.0  1  PF00316.15 Fructose-1-6-bisphosphatase


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.0   2.5e-65   3.4e-61      76     322 ..       6     242 ..       1     244 [. 0.93

  Alignments for each domain:
  == domain 1    score: 206.7 bits;  conditional E-value: 2.5e-65
  PF00316.15  76 kaseavkvlaSEEeeelvvlegekegkyavaiDPlDGSSnidtnvsvGTifsifrrasedeastidvlrpGreqvAagyviYGpstalvltlgkGvneftl..DldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkg.GiflypgdkkyekgkLRllyEaaPlaflieqagGkatdgk..kriLdlvpkklhqrtpivlGskdeverveeli 322
                 ++s +v   aSEEe+e+     ++ g+y+v+ DPlDGSS +d n +vGT+++i+      +++   +  +Gr+qv +  ++YGp+t+++++l++G+ ef +  + ++g++i  +e+++i +e kifs+ + +a ++ + +++++d+++e      + ++lRy g+lV+dv++ + kg G+f++p++ +   +kLRl +EaaP ++l+e+agG+++dg    ++Ld+v+++++qrt +++Gs++ev+r++++i
  MMETSP0890-20130614|6517_1   6 RESAVVFEGASEEEPEIKSC--NPDGQYVVCWDPLDGSSIVDNNWAVGTMIGIWD-----KKTGL-IGATGRDQVTSIVALYGPRTTVLVALDDGCYEFSYgvEGQEGSWICSRERIQISKECKIFSPANMRAAQDLPGYKELLDHYQE------NRFTLRYSGGLVPDVYQQFTKGqGVFSNPTSIS-SPAKLRLAFEAAPFGLLVEKAGGSTSDGVsgGSVLDVVINSVDQRTALCIGSSQEVDRFNSMI 242
                 566778888***********..89*******************************.....23233.5679*****************************98334579*****************************************9......78*****************************99.779*************************86689**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 1034.22
//
Query:       MMETSP0890-20130614|6520_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.67
# Mc/sec: 1849.13
//
Query:       MMETSP0890-20130614|6521_1  [L=833]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-22   77.5   0.0    1.2e-21   76.7   0.0    1.3  1  PF00650.15 CRAL/TRIO domain
  ------ inclusion threshold ------
       0.11   11.6   0.1       0.24   10.6   0.1    1.5  1  PF04016.7  Domain of unknown function (DUF364)
       0.14   11.9   0.0       0.39   10.5   0.0    1.7  1  PF00165.18 Bacterial regulatory helix-turn-helix proteins, AraC family


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   2.6e-25   1.2e-21       7     159 .]     582     748 ..     577     748 .. 0.82

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 2.6e-25
  PF00650.15   7 gkvgihgrDkngrpvlylrlgrfdpk.........kls.eeelvrllllv.lerllkllee.....dgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyidpeqlpkelGGt 159
                  k ++h+rD+ g+ + + ++++ + +         +++  ++ +++++ +   ++l+ ++e     + +++ +  viD++ ++l + + ++ +++k ++  +++nyPer+ + +i+naP++f v++++v+p+l +++reKi+++ + n ++ l++ +dp+ lp e+GG+
  MMETSP0890-20130614|6521_1 582 HKHFVHKRDRLGHILAFEVVDSPNRSfkqlanegiTVDdVANHMHFVSAFtYVKILDDVDEvgrkpKDPQGYFLKVIDLRHIGLGDCGGDTARYFK-LVAAINRNYPERVWRTIIINAPSVFGVIWTIVSPLLEPNVREKITVLRS-NYKDHLRELVDPDDLPVEYGGN 748
                 67899****************999998866666443332334444443330334445555589999999*******************77677775.888********************************************65.5558*****************7 PP

>> PF04016.7  Domain of unknown function (DUF364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   5.2e-05      0.24      52      87 ..     265     300 ..     243     308 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
                 -GGGHHHHGGG----EEEGGGTT---HHHHHHH-SS CS
   PF04016.7  52 pdeeaeellpeadvviitGstLvNgtlerllelakk 87 
                 ++ +++ l++++++v+i + +L+N+++  ll++a  
  MMETSP0890-20130614|6521_1 265 TKRKSNALIRRVKAVVIAAQSLANDNIFPLLKRALA 300
                 6778899*************************9864 PP

>> PF00165.18  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.5e-05      0.39       7      28 ..     614     636 ..     610     639 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.5e-05
                 ..--HHHHHHHHTS.-HHHHHHH CS
  PF00165.18   7 tnwsiadiAeevgf.Spsyfsrl 28 
                 ++++++d+A++++f S +++ + 
  MMETSP0890-20130614|6521_1 614 EGITVDDVANHMHFvSAFTYVKI 636
                 569**************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.22u 0.41s 00:00:01.63 Elapsed: 00:00:00.89
# Mc/sec: 2242.88
//
Query:       MMETSP0890-20130614|6524_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-09   35.0   0.0      2e-08   33.8   0.0    1.6  1  PF09830.4 ATP adenylyltransferase
  ------ inclusion threshold ------
       0.07   11.9   0.0       0.11   11.3   0.0    1.2  1  PF09565.5 NgoFVII restriction endonuclease


Domain annotation for each model (and alignments):
>> PF09830.4  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.9e-12     2e-08       1      53 [.     295     371 ..     295     383 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2.9e-12
   PF09830.4   1 sYNllltkewmllvPRssesa........................aggislNslgfaGtllvkseeeldelkkngpl 53 
                 +YNlllt++++llv+Rs+ +a                        +  + lN+l faGt+ v +++  + l +   +
  MMETSP0890-20130614|6524_1 295 PYNLLLTTDFILLVRRSKSKAlvqvpftamnseeeehffsssvatSWTLPLNGLAFAGTIAVNDQSLYNFLSSSSSS 371
                 8******************************************9988899***************988877766655 PP

>> PF09565.5  NgoFVII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.6e-05      0.11     210     268 ..      19      78 ..       8      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.6e-05
   PF09565.5 210 krkarnwy.eaeirvskeitreegyPekkkpftvitDDGtileaklegennKqltskgnk 268
                    +r w+ eaei +++  +    +P k k+ t+i D G+ l++ l +  +K+ +s  +k
  MMETSP0890-20130614|6524_1  19 IEWSRRWNlEAEIGIASVSAAAHLFPLKLKSSTIIQDQGMHLKLLLVESSKKASSSNEKK 78 
                 5556777669************************************99999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.78
# Mc/sec: 1204.32
//
Query:       MMETSP0890-20130614|6527_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-14   52.7   4.4    1.1e-05   25.3   0.1    4.8  5  PF13499.1  EF-hand domain pair
    8.7e-07   27.7   0.0      0.013   14.6   0.0    3.9  3  PF00036.27 EF hand
    2.2e-05   23.8   3.2      0.019   14.6   0.1    4.2  4  PF13405.1  EF-hand domain
    6.1e-05   22.0   0.3      0.011   14.8   0.0    3.9  3  PF13202.1  EF hand
  ------ inclusion threshold ------
       0.21   11.2   3.1       0.58    9.8   2.2    1.8  1  PF00404.13 Dockerin type I repeat


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.82   2.2e+03      21      47 ..      32      63 ..      29      65 .. 0.82
   2 !    9.4   0.0   0.00037         1      17      63 ..     245     303 ..     231     305 .. 0.79
   3 !   15.7   0.1   4.1e-06     0.011       6      32 ..     341     367 ..     322     437 .. 0.83
   4 !   25.3   0.1   4.1e-09   1.1e-05      10      61 ..     459     506 ..     459     511 .. 0.89
   5 ?   -2.0   0.0       1.3   3.6e+03      20      45 ..     536     557 ..     535     559 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.82
   PF13499.1 21 eLlrllkhlgsels.....deevrevldyifk 47
                 L+r+++++++el+     ++e+  ++d++ k
  MMETSP0890-20130614|6527_1 32 SLERVAQKHLEELFciflsRDETVAQVDEWTK 63
                58899999999999999998888888888876 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00037
   PF13499.1  17 ldkeeLlrllkhlgsels............deevrevldyifkelDkngdGvlsfeEfl 63 
                 + ke+L+ ll++  + +              + + +v+ +if ++++ ++G++s+ E++
  MMETSP0890-20130614|6527_1 245 IRKEDLEPLLRFVVTTHPglafleehaefqAKYSATVIARIFYRINLSRTGQISRRELC 303
                 6677777777777777777777666666666666779********************97 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 4.1e-06
   PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgse 32 
                 F++lD d+d ++++ +Ll++  h +s 
  MMETSP0890-20130614|6527_1 341 FWELDADKDAKITRSDLLKYGGHRLSR 367
                 ********************9887754 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 4.1e-09
   PF13499.1  10 DkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeE 61 
                 D ++ +  +++++++++        d++ + +l+y+f ++D +gdG+++ ++
  MMETSP0890-20130614|6527_1 459 DIHQADAMTYADFVYFMLSEE----DKGNEASLRYWFTCVDVDGDGFIDAAD 506
                 567778899*********999....***********************9776 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 1.3
   PF13499.1  20 eeLlrllkhlgselsdeevrevldyi 45 
                 ++Ll+  +h++    ++ +r +++++
  MMETSP0890-20130614|6527_1 536 ADLLHSGTHSQ----HSLLRLSIQDF 557
                 78999999999....66666666655 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.07   1.9e+02       4      24 ..     284     304 ..     281     306 .. 0.79
   2 !    6.3   0.0    0.0022       5.9       6      24 ..     341     359 ..     337     361 .. 0.90
   3 !   14.6   0.0   4.8e-06     0.013       2      21 ..     487     506 ..     486     511 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.07
                 HHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfke 24 
                 ++F  +   ++G+Is  E++ 
  MMETSP0890-20130614|6527_1 284 RIFYRINLSRTGQISRRELCL 304
                 56666777789********86 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0022
                 HHHHCTTTSSEBEHHHHHH CS
  PF00036.27   6 FkefDkDgdGkIsfeEfke 24 
                 F e+D D+d kI+ +++++
  MMETSP0890-20130614|6527_1 341 FWELDADKDAKITRSDLLK 359
                 889************9976 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 4.8e-06
                 HHHHHHHHCTTTSSEBEHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeE 21 
                 l+ +F  +D+DgdG+I+  +
  MMETSP0890-20130614|6527_1 487 LRYWFTCVDVDGDGFIDAAD 506
                 6779*************876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.018        49       4      23 ..     284     303 ..     281     305 .. 0.88
   2 ?    2.5   0.1     0.056   1.5e+02       9      24 ..     344     359 ..     343     361 .. 0.91
   3 ?   -3.3   0.2       4.1   1.1e+04       9      16 ..     425     432 ..     424     447 .. 0.56
   4 !   14.6   0.1   7.1e-06     0.019       2      25 ..     487     510 ..     486     518 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.018
                 ---GCC-------B---HHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELr 23 
                 ++F  +   ++G+i++ EL 
  MMETSP0890-20130614|6527_1 284 RIFYRINLSRTGQISRRELC 303
                 7899999***********95 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.056
                 C-------B---HHHH CS
   PF13405.1   9 fDkdgdGkidaeELrd 24 
                 +D d+d ki++++L++
  MMETSP0890-20130614|6527_1 344 LDADKDAKITRSDLLK 359
                 8************986 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 4.1
                 C------- CS
   PF13405.1   9 fDkdgdGk 16 
                 +D d d +
  MMETSP0890-20130614|6527_1 425 YDLDDDDT 432
                 56665554 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 7.1e-06
                 HH---GCC-------B---HHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrda 25 
                 lr+ F+  D dgdG+ida++ +++
  MMETSP0890-20130614|6527_1 487 LRYWFTCVDVDGDGFIDAADAKHF 510
                 7999**************997776 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11   3.1e+02      13      21 ..     294     302 ..     291     302 .. 0.89
   2 ?    0.7   0.0      0.12   3.2e+02       8      21 ..     344     357 ..     341     360 .. 0.86
   3 !   14.8   0.0   4.2e-06     0.011       4      21 ..     490     507 ..     487     511 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.11
                 ---B-HHHH CS
   PF13202.1  13 DGkIsreEL 21 
                  G+Isr EL
  MMETSP0890-20130614|6527_1 294 TGQISRREL 302
                 6*******8 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.12
                 H--S----B-HHHH CS
   PF13202.1   8 fDlNgDGkIsreEL 21 
                 +D+++D kI+r++L
  MMETSP0890-20130614|6527_1 344 LDADKDAKITRSDL 357
                 8*****99999887 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 4.2e-06
                 HHHHH--S----B-HHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                 +F ++D++gDG+I++ + 
  MMETSP0890-20130614|6527_1 490 WFTCVDVDGDGFIDAADA 507
                 799***********9865 PP

>> PF00404.13  Dockerin type I repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2   0.00021      0.58       1      13 [.     495     507 ..     495     507 .. 0.97

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00021
                 -TT-SS--SHHHH CS
  PF00404.13   1 DVNgDGkVnalDl 13 
                 DV+gDG ++a D+
  MMETSP0890-20130614|6527_1 495 DVDGDGFIDAADA 507
                 9***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.93
# Mc/sec: 1703.22
//
Query:       MMETSP0890-20130614|6528_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.88
# Mc/sec: 667.17
//
Query:       MMETSP0890-20130614|6532_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.7e-111  371.7   3.9   5.4e-111  371.5   2.7    1.0  1  PF00450.17 Serine carboxypeptidase
  ------ inclusion threshold ------
      0.054   13.2   0.1       0.18   11.5   0.0    1.9  1  PF09134.5  Invasin, domain 3


Domain annotation for each model (and alignments):
>> PF00450.17  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.5   2.7  7.9e-115  5.4e-111       1     416 [.      25     473 ..      25     475 .. 0.89

  Alignments for each domain:
  == domain 1    score: 371.5 bits;  conditional E-value: 7.9e-115
                 CC--ST...-EEB--EEET.TTTEEE-EEEE--SS-TTTS-EEEE--------TT----S-----B--.....--S--B--TT-GGGCSEEEEE--STT----B------......STTT---HHHHHHHHHHHH-CHHCH--EEEE--TT---HHHHHHHHHHC-SS-....SS-EEEEEE------H.........HHHGGGHHH.-------S-HHHHHHHHHCH.....HHH---HHHHHHH--HHHHHHHHHHHH---TT-TTS--..................................-----SSTTHHHHHHHHCSCCHHHH--...--SSS--S--HHHHHT---TT.S-TCHH.HHHHHHTT--EEEEE----STT-----HHHHCC--STTHHHHHHS--BB.TT-SB---EEEE....TTEEEEE-------HHHH-HHHHHHHHHHHH CS
  PF00450.17   1 PgleetvnfkqysGYldveekedkslFYwfvesennpetdplvlWLnGGPGCSSlgGlleElGpfrvn...kdstkkleenpysWnkvanvlfldqPvgvGFSysntssd...yktddeetaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeileenkkgekpninlkGvligNglide.........atqvnsyve.fayehgliseeeyeklkkackkna.kalekestkcaklveeaskevvlkengginvyniyedcct.lss.....................lkksstdsqggldcysesavekylnreeVrkalhvnkaevkeweecndevfeqtgddvsksveei.lekllesglrvliysGdvDlicnflgteawikklnlsgkkefrpwevsl.edgqvaGyvkey....rnltfltvkgaGHmvpedqPeaalqmikrfl 416
                 Pg ++ ++ k ysG+++++  ++k+l+Y+fves+n p++dp+ +W+nGGPGCSSl+G+l+E+Gpfr++    ++ ++le  +ysW+ +an+++l+qPvgvGFSys+ +++   y+ +d+++a d++++++ ffekfpe+k++df+itGESYaG+yvP  a++il++ ++   +   lkG+ +gNg+  +          tq ++y+  ++++ +++ ++  ++++ +c++++ ++  +  ++c++ v ++++      ++++++y +y dc +   s                      +k+ +++  +  c++ +a++++ln+++V++alhv++a+v++w  c+d +  + ++ +++++  + ++ l+++ +rv iy+Gd D +++++ +eaw+ ++n+++kke++pw+ ++   + v+Gy ++y     +++f+tv+g+ H+vpe  Pe+a++m    +
  MMETSP0890-20130614|6532_1  25 PGYNGSLPSKIYSGFINAS--ATKHLHYVFVESQNAPSDDPIAIWMNGGPGCSSLDGFLYEHGPFRFKaynGTGLPELELFEYSWTYIANMVYLEQPVGVGFSYSSAQDTtedYTCSDDTVAVDNLAAIQAFFEKFPEFKNNDFFITGESYAGIYVPVTAEAILQAGDNY--TGAALKGIGVGNGCSGDeigicafsdSTQGSYYTTkYLMQTAFVPDTLKDEISATCDFDTwSQGGEIGSACSEIVLKLDA-----LTEKLDTYCVYCDCGEqF-SattlqqhtflqsspkisrhqmRHKNIKKNVATTACIDSDAASAWLNTPSVQEALHVTQAQVSNWAVCTDAA-GWSYESTRPNLPRDtYPGLISQ-IRVTIYNGDWDACVPYTDNEAWTSNMNYTTKKEWHPWTLQVdGYTSVGGYATTYevdgPGFQFTTVRGGRHEVPETAPERAYAMAAAIF 473
                 788888999**********..99********************************************988777889*****************************77666666*****************************************************9886..79*************998888888874444444435**********************9875555666788888888876.....356889999999986652.145677788999999999999866677889999*************************************88.6777777788776515566666.***************************************9668999********875444************************98766 PP

>> PF09134.5  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.6e-05      0.18      11      74 ..     139     203 ..     128     217 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.6e-05
   PF09134.5  11 stsdiladgsmssilsf...vpvdknnefvsgitdlefiqsgvpvsispvteqadsytas.vvgnsvg 74 
                 s  d +a   + +i +f    p  knn+f   it+ ++    vpv+   + +  d+yt + + g  vg
  MMETSP0890-20130614|6532_1 139 S-DDTVAVDNLAAIQAFfekFPEFKNNDFF--ITGESYAGIYVPVTAEAILQAGDNYTGAaLKGIGVG 203
                 3.3455555555555542227999****97..89999********************96514455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:01.04
# Mc/sec: 1101.40
//
Query:       MMETSP0890-20130614|6536_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:01.12
# Mc/sec: 325.22
//
Query:       MMETSP0890-20130614|6535_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-54  183.8   0.3    3.1e-54  183.2   0.2    1.3  1  PF00742.14 Homoserine dehydrogenase
      6e-18   65.2   0.2    1.3e-17   64.0   0.1    1.6  1  PF03447.11 Homoserine dehydrogenase, NAD binding domain
    0.00075   18.8   0.1     0.0019   17.5   0.1    1.8  1  PF01842.20 ACT domain
  ------ inclusion threshold ------
      0.016   15.3   0.1      0.047   13.8   0.1    1.8  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00742.14  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   0.2   9.2e-58   3.1e-54       1     179 []     131     312 ..     131     312 .. 0.98

  Alignments for each domain:
  == domain 1    score: 183.2 bits;  conditional E-value: 9.2e-58
  PF00742.14   1 PiiktlkellagdeiekieGilnGTlnyiltemeeeglsfeealkeAqelGyaEadPreDveGlDaarKllIlarlafgleleledvevegiskltledieeakekgkvlrlvaeaere.eekleasvkpelvpkehp..lasvkgsdnavsietdrlgelvisGpgaGaevTAsavlsDll 179
                 Pii+tl++ la d++++++Gi+nGT+n++l++me eg+++ ++l++Aq+lGyaEadP++DveG+D+++K++Ila+lafg+++ +e+v++ gisk+++ d+e+ak  +++++l++ a ++ ++++ + v+p++v++ehp  +a  +g +navsi +d lg   + G+gaG+++TA++v++D++
  MMETSP0890-20130614|6535_1 131 PIISTLSTHLAKDQVHSVKGIMNGTTNFMLSKMEAEGADYGQVLAQAQALGYAEADPTADVEGHDVCAKIAILAKLAFGITVPPEKVPTYGISKIQAVDFEYAKILNATVKLLGCAVKNpDNSIAVYVAPHVVANEHPsgFAGARGPTNAVSIVSDQLGIASLVGAGAGRDPTARSVVADVI 312
                 9*****************************************************************************************************************99886799***************966789*************************************96 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.1   3.9e-21   1.3e-17       1      98 [.      11     108 ..      11     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 3.9e-21
                 -------HHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-.S--TTT---HHHHHH---EEE----TGGG.-HC CS
  PF03447.11   1 GlGaiGsallellkrqqeeiplelvavadrdsllskarkallgdeavtldlddlvadlrvdvvVEc.asseavaelvlkaLeagkhvvtankgAla.dea 98 
                 G G++G++++++l+++++e  +e++ va+rd+++  ++k ++ ++ +t++++d+v d  +++v+E+ +++  ++e+v++aL++gkhvvtank++la  ++
  MMETSP0890-20130614|6535_1  11 GGGVVGGGTYTILTEKAAE-LCEITRVAVRDMKKPRDWK-MASHTVLTDKWQDIVYDDSIQLVIEVaGGTGVAKEVVCEALKKGKHVVTANKALLAtCLD 108
                 77****************9.9**********88888896.899*************999*******99999************************94444 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   5.5e-07    0.0019       2      55 ..     345     400 ..     344     411 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.5e-07
                 EEEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS...EEEEEEEEEECHHHHH CS
  PF01842.20   2 vlevgvpDrPGlLaevfgaLadrgiNidsisqstsgdk..agivfvtvvvdeedle 55 
                 +++++++D+ G++  +  +  +rg++i  + q++ +d+    +v++t++v  ++++
  MMETSP0890-20130614|6535_1 345 YVRISAADQLGIIKSIGDVAEKRGVSINAVLQNPIKDPkqIAFVVTTDSVKFSSAQ 400
                 79***********************************8766666666655555555 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.4e-05     0.047       1     100 [.       6     102 ..       6     112 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
                 EEEEB--------HHHHHHHC..TSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEE..GCGCCCTC-SEEEE.---HHHHHHHHHCHHHTTSEEEE-SSTT CS
  PF01118.19   1 kvaivGatGyvGqellrlLee..hpelelvalvassrsaGkklaeahkaleegkdlvled..adeeelkevdivfl.alpagvskelapklleagvkviDlssaf 100
                 k+++vG  G vG    ++L e   + +e+++++ ++ ++ + ++ a          vl+d   d+   +++++v+  a + gv+ke++ ++l++g++v+ + +a+
  MMETSP0890-20130614|6535_1   6 KIGLVG-GGVVGGGTYTILTEkaAELCEITRVAVRDMKKPRDWKMASH-------TVLTDkwQDIVYDDSIQLVIEvAGGTGVAKEVVCEALKKGKHVVTANKAL 102
                 799***.9*************755558888888888866666666544.......333332333444478999996156679*****************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.75
# Mc/sec: 1351.55
//
Query:       MMETSP0890-20130614|6537_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.065   12.8   0.0        0.1   12.1   0.0    1.3  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.3e-06       0.1      55     117 ..      15      93 ..       4      99 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.3e-06
  PF00578.16  55 fkkkgv..evigvsvdspeshkkfaekne...lnfpllsDeege..vakaygvlnee.........kglalratfvidk 117
                 ++++g+  ev+   +   e++k+  e+ +   l fp+lsD+e++  v +a +v+ ++         ++++++a++v+d 
  MMETSP0890-20130614|6537_1  15 LRAAGIdlEVVTAEPGGDEAVKARLEERGvtnLSFPVLSDPEHKllVLDAGDVYVTAhydwkvsgnYEMIQPALIVFDV 93 
                 55554422777777788889999999999999********999933457777777777778887777778888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|6543_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-24   86.1   0.5    1.9e-22   79.6   0.4    2.3  1  PF04603.7 Ran-interacting Mog1 protein


Domain annotation for each model (and alignments):
>> PF04603.7  Ran-interacting Mog1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.4   1.4e-26   1.9e-22       3     138 ..      27     142 ..      25     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 1.4e-26
   PF04603.7   3 plfgGalsailPpklldvselreiPdnqevflhdstdqsvivellekqekvsdeeaaryhfedvasdndaearevlsvkplsledlalrsekaeawvlsGlqrvakeneeaakdvaifvallrliqfqtdllitvn 138
                  l+gGa+   +P +++dvse+r+iPdnqevf+++  d+s+i+el+e           + hf+d+a  nda ++e++ +               +   + G+q vak+n+   +++ if+++ rl    +dllit+n
  MMETSP0890-20130614|6543_1  27 VLWGGAIQCRIPETFVDVSEMRQIPDNQEVFVDKNSDDSIILELMEIA-------SIQSHFDDLAIANDAISKEIKHQ--Y-----------DDDNFIIGTQSVAKFNDTNPTEIMIFLSIYRLYRADADLLITYN 142
                 699******************************************975.......4567************9999754..2...........34445779**********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 642.66
//
Query:       MMETSP0890-20130614|6542_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.8e-138  458.7   0.0   1.2e-137  458.4   0.0    1.0  1  PF00022.14 Actin
  ------ inclusion threshold ------
      0.069   13.4   0.0       0.14   12.4   0.0    1.4  1  PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.4   0.0  1.8e-141  1.2e-137       6     393 .]      40     408 .]      37     408 .] 0.98

  Alignments for each domain:
  == domain 1    score: 458.4 bits;  conditional E-value: 1.8e-141
  PF00022.14   6 avVlDnGssttkaGfagedaPkavipsvvgkprgekvea.....klyvgdealekrpelevrnpvedGvvedwdameelwehvlkeelkvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgkatglvvDsGasvtsvvpvleGlvLkkairrldlgGkalteqlkellsskkvevtprylikkkkavetesfktleeeevleeiKesvcevsddpeg.ekaeasseepessYeLPDgseiilgeerfrvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlwvskqeYeEkGssvverkck 393
                 av++DnGs+++kaGf+g++aP++ +ps+vg+p++ + ++     + +vgdea++kr++l +++p+e+G+v++w +me++w h++ +el+v peehp+llte+plnp+anre+++ei+fE+f+vpa+y+  +avl++yasg++tg+v+DsG++v++ vp++ G  +++airrld+gG++lte+l++ll+++                 +++f+t++e+e++++iKe+ ++v+ d+e+ ++ +++++++e+sYeLPDg++i++g+erfr+pE+lF+p lig+e         g++e ++++i +cdvd+r +L+aniv++GG++l+ g++ Rlekel++l+p+ ++v+++ap+ erkys++iGGSiL sl++fq +w+ ++eY++ G+++v+rkc+
  MMETSP0890-20130614|6542_1  40 AVIIDNGSGMCKAGFSGDEAPRCSFPSLVGRPKHPGIMTatnhkDEFVGDEAQAKRGMLILSYPIEHGIVTNWADMEKIWYHAFLNELRVSPEEHPILLTEAPLNPKANRERMLEIMFETFEVPAVYVQIQAVLALYASGRTTGCVLDSGDGVSHTVPIYHGHCFPHAIRRLDIGGRDLTEYLRKLLTER-----------------GYNFTTTAESEIVKDIKEKYTYVAFDFEQeMRLAQNATDIEVSYELPDGNNITIGNERFRAPEVLFNPALIGKEAM-------GVHESMFDTIIHCDVDVRDDLFANIVLSGGNTLFDGINFRLEKELTTLVPPAMNVTVYAPP-ERKYSVFIGGSILCSLDSFQPMWILRHEYDDAGAAIVHRKCF 408
                 89*********************************999999998999**********************************************************************************************************************************************6.................9***************************988888888************************************865.......*************************************************************.*****************************************7 PP

>> PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05      0.14      17      67 ..      76     123 ..      64     127 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
   PF10183.4  17 qsssssaarravegkederdppkgllfgkkpispGekrdwegwelafflgf 67 
                   ++++++++ v ++ +    + g+l   +pi +G    w+++e++++ +f
  MMETSP0890-20130614|6542_1  76 IMTATNHKDEFVGDEAQ---AKRGMLILSYPIEHGIVTNWADMEKIWYHAF 123
                 44555555555333333...55688***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1253.48
//
Query:       MMETSP0890-20130614|6546_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.2   0.0      0.094   11.9   0.0    1.1  1  PF11794.3 4-hydroxyphenylacetate 3-hydroxylase N terminal


Domain annotation for each model (and alignments):
>> PF11794.3  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-06     0.094      48     114 ..       7      72 ..       1      96 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-06
                 STTTHHHHEEE-C----EEEGCC----SHHHHHHHHHHHHHHHHHTSS---T-THHHHHHHHHHHHC CS
   PF11794.3  48 dpekadlltatseetgekvnrffhiprskeDllkkrkairllarktgGcmgRspDalnallvtlaaa 114
                  p++++ l   s+  +    r+f+   + e+     +a++ + + ++Gc+gR+ ++  +l++  +++
  MMETSP0890-20130614|6546_1   7 VPDNENNLIL-SPAASAALTRAFRRFCTDEQESMSLEATENWLQAINGCLGRGTEYRTTLAILNKKY 72 
                 5666665554.677777888999999999999999********************999888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 700.75
//
Query:       MMETSP0890-20130614|6548_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   18.0  19.6     0.0041   16.8   1.7    2.8  3  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4      0.66     9e+03      26      30 ..      33      37 ..      33      37 .. 0.85
   2 !   12.5   2.0   6.6e-06      0.09       5      31 .]     298     324 ..     296     324 .. 0.89
   3 !   16.8   1.7     3e-07    0.0041       4      31 .]     347     374 ..     345     374 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.66
                EESS- CS
  PF00397.21 26 tqWek 30
                t+W++
  MMETSP0890-20130614|6548_1 33 TTWDD 37
                9**96 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.6e-06
                 EEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   5 Weersddd.dGrvYYyNheTgetqWekP 31 
                 W ++ d   ++r+Y+ N  T +t+W+ P
  MMETSP0890-20130614|6548_1 298 WDKYLD-AtSQRYYWANRFTLQTTWTNP 324
                 888886.458****************99 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 3e-07
                 SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   4 gWeersddd.dGrvYYyNheTgetqWekP 31 
                 +W+ + d + +G +Y+ +  T+e +W +P
  MMETSP0890-20130614|6548_1 347 QWTPHLD-PrTGATYWAHNVTKEVTWLRP 374
                 5996674.447****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:01.21
# Mc/sec: 746.63
//
Query:       MMETSP0890-20130614|6547_1  [L=1313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-36  125.2   0.3    2.9e-26   92.4   0.0    2.5  2  PF00773.14 RNB domain
    1.3e-19   70.2   0.0    4.7e-18   65.1   0.0    2.7  1  PF00270.24 DEAD/DEAH box helicase
    1.8e-10   40.2   0.0    5.6e-10   38.6   0.0    1.9  1  PF08148.7  DSHCT (NUC185) domain
    9.2e-07   28.7   0.0    8.4e-06   25.6   0.0    2.3  2  PF04851.10 Type III restriction enzyme, res subunit
    7.4e-05   22.4   0.0    0.00015   21.4   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
       0.34   10.5   2.6       0.44   10.2   0.0    2.5  2  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF00773.14  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   1.3e-29   2.9e-26      11     126 ..       2     116 ..       1     125 [. 0.96
   2 !   30.0   0.0   1.2e-10   2.7e-07     285     319 ..     183     220 ..     170     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 1.3e-29
  PF00773.14  11 tIDpetakdlDdAisieklsdgnyelgVhIADvthyvkpdseldkearkrgtsvyLpekvvpMLPeelsedlcsllpgedrlalsveitldkkgevlsveiypsiirskarltyee 126
                 ++D+++++d+DdA+s+e ++d+  +lg+h+ADv++++  +s l ++a++r++s y  e++vpMLP+el+ d  sl++g++r a+s+++++  + e+l+ +  ++ii +    ty+ 
  MMETSP0890-20130614|6547_1   2 SVDNAGTRDIDDALSFEIKEDT-KVLGIHVADVASRIAVNSVLFSWAQERASSAYSMEHSVPMLPPELAHDELSLNQGVERNAISLFLEIGPNLEILNKRHARTIIINNDATTYAR 116
                 69***************99977.9**********************************************************************************9999999976 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.2e-10
  PF00773.14 285 y...ssepagHfgLglniYthfTSPirRYpDllvhrqL 319
                 y   + +pa H gLgl +Y+h+ SPirR+ Dl ++++L
  MMETSP0890-20130614|6547_1 183 YvssDMDPAAHIGLGLAHYAHCSSPIRRFCDLANQHVL 220
                 4555668899*************************998 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.1e-21   4.7e-18       2     169 ..     424     621 ..     423     625 .. 0.73

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2.1e-21
                 HHHHHHHHHHHS.S-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT..SS.EEEEETTSSBHHH...HHHHHH..............T..-SEEEEEHHH..............HHHHHHH....CCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx...xxxxxx..............xxxxxxxxxxxxx..............xxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilg.ggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky..pklrvlliiggvalar...dqlsvl..............dngvdivvgTpgr..............lddlvst....gkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 169
                 + Q+++++ i++ g d+l+ a+TGsGKT+++l+++lq+++++      ++a + +P ++L +q + ++++++     +  v+l++g+v+++     q++ +              ++g  i+  T                 l  + ++    +   +l++++++V DE++ + + ++++ +++ l+++  +k++q+++lSATl+ d
  MMETSP0890-20130614|6547_1 424 DFQKRCLRVIVEpGLDLLAMAPTGSGKTAVALMAILQAFARG------QRAAYTSPIKALSNQKYAEFTEWFRGrgIDAHVTLLTGDVKIRAppgTQRELMictseilrnklvkaSGGSGILTITAAAkaaaeagdqeaaraLEIMAREghteDADpDLERLGCVVSDEIHYINDVDRGAVWEETLMHM--PKQVQMVALSATLK-D 621
                 6799*******659*************************876......49**********************99664445555566555221000111111222333333333337777787777777777777777777763333333333333345678***********************99999..888**********8.4 PP

>> PF08148.7  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.4e-13   5.6e-10       7     180 .]    1142    1309 ..    1137    1309 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.4e-13
   PF08148.7    7 vtlkGrvaaeisseneLlltellfsgvfeeldpeelaallsalvfeerrddeesdlppslelaealeelkeiakklakveeehrldeeeyveredlglvevvyeWarGksfaeileet.dldeGdiVRlirRlddllrqianaakvigdpelaekaeeaielikRdiVfaaslYl 180 
                   t  G++aa+ s +++L+l+ ++ ++++ +l+ +e+ a l+ ++ ++++d++++d+    +l ++ + l ++    ++++e+         e++d  l+ +v eW++ k+++ i +       G++V++i Rl   ++ ++++    g+ e+++++++  + +  + V  +slYl
  MMETSP0890-20130614|6547_1 1142 LTPRGKCAAAFSDGEPLILGTMIADEALYGLSLPEVSAWLCLFIPNRTTDKSNADFLLA-SLSQPSAALVDVFDYADELSEQLDK------EKPDRILALLVLEWVKTKDIKVIAKLVdPHLLGSFVKVIMRLLSYIDVVREVLLGLGQYEIHNRLDNHADGLLAGLVTNESLYL 1309
                  5789******************************************9999886666555.9999999999999999888877776......7889**********************956789********************99*****************************7 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.7e-09   8.4e-06      29     183 ..     441     620 ..     422     621 .. 0.78
   2 ?   -0.5   0.1      0.36   8.2e+02      87     130 ..     801     844 ..     783     863 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3.7e-09
  PF04851.10  29 livmaTGtGKTlvaasliarlar...kflflvprkelleqaleef............kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esks.........eslealldefdviiiDEaHrlsakkkyreile......fkkafllglTATpe 183
                 l  ++TG+GKT va+ +i++ +    ++    p k+l +q + ef                +  +   k   ++ ++++l++ +++ + +k  k +  + i+ +t+    +a    +e++    +         e  +  l++  +++ DE H +++ +   ++ e       k+  ++ l+AT +
  MMETSP0890-20130614|6547_1 441 LAMAPTGSGKTAVALMAILQAFArgqRAAYTSPIKALSNQKYAEFtewfrgrgidahV---TLLTGDVKIRAPPGTQRELMICTSEILRNKLVKASGGSGILTITAAAKAAAEAGDQEAArA--LeimareghtEDADPDLERLGCVVSDEIHYINDVDR-GAVWEetlmhmPKQVQMVALSATLK 620
                 66789**********988888888*********************9999998874441...3333333445678999999999*******99999999999999888887776665555533..245877776655555666666**************5.55555555578777888******87 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.36
  PF04851.10  87 vakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeee 130
                 + kk+k++++e+++ +++ee+++k+++  +++i +  + +++++
  MMETSP0890-20130614|6547_1 801 KPKKKKNIDQEEGEDNEEEEEEEKKRKARISEIERKRRVMHQKH 844
                 45677777777777777777778888877787777666666655 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.5e-08   0.00015      10      78 .]     869     949 ..     862     949 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.5e-08
                 EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS.............BSSHHHHHHH------TT CS
  PF00271.26  10 vailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl.............prsvtsyiQriGRtgRag 78 
                 va++h+++ +  re +   f++   + ++at  ++ G+++p+ ++V ++ l             +  v+++ Q++GR+gR g
  MMETSP0890-20130614|6547_1 869 VAYHHSGMLPILREYVELCFQQRLVRLVFATETLAVGVNMPA-RCVAFTQLdkpddtgakqghrWLRVDEFWQMAGRAGRRG 949
                 699*************************************75.9999999999**********9999*************76 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00019      0.44      16      50 ..     443     473 ..     431     485 .. 0.84
   2 ?   -2.1   0.6       1.3   2.9e+03      16      35 ..     531     549 ..     498     569 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
   PF13245.1  16 tGgPGtGKTttlaaiiaallaarekpgrsvllvap 50 
                  ++ G+GKT++++ +i +++a+    g++  + +p
  MMETSP0890-20130614|6547_1 443 MAPTGSGKTAVALMAILQAFAR----GQRAAYTSP 473
                 5899****************87....777766655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
   PF13245.1  16 tGgPGtGKTttlaaiiaall 35 
                  +  G+G   t++a++ a++
  MMETSP0890-20130614|6547_1 531 KASGGSGIL-TITAAAKAAA 549
                 333344444.4444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1076  (0.078701); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.99u 0.36s 00:00:02.35 Elapsed: 00:00:02.20
# Mc/sec: 1430.19
//
Query:       MMETSP0890-20130614|6557_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 249.22
//
Query:       MMETSP0890-20130614|6558_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.32s 00:00:00.59 Elapsed: 00:00:00.71
# Mc/sec: 101.25
//
Query:       MMETSP0890-20130614|6556_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-20   70.5   0.6    8.1e-20   70.5   0.4    2.0  2  PF05241.7  Emopamil binding protein
  ------ inclusion threshold ------
       0.01   15.0   0.7      0.035   13.3   0.5    2.0  1  PF10766.4  Protein of unknown function (DUF2592)
      0.062   13.0   0.1        0.2   11.4   0.0    2.0  1  PF10177.4  Uncharacterised conserved protein (DUF2371)
       0.23    9.5   1.8       0.43    8.6   0.1    2.1  2  PF02480.11 Alphaherpesvirus glycoprotein E
        3.7    7.2  10.1       0.16   11.6   0.6    2.9  3  PF04544.7  Herpesvirus egress protein UL20
        8.6    6.6  10.3        3.8    7.7   0.0    3.9  4  PF09990.4  Predicted membrane protein (DUF2231)


Domain annotation for each model (and alignments):
>> PF05241.7  Emopamil binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.7      0.79   1.8e+03      94     113 ..     285     305 ..     244     356 .. 0.56
   2 !   70.5   0.4   3.5e-23   8.1e-20      27     185 ..     504     666 ..     498     674 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.79
   PF05241.7  94 ltvlveGpla.llvayliakk 113
                  ++lv + la +l++++ia +
  MMETSP0890-20130614|6556_1 285 YKCLVIANLAlCLICICIALA 305
                 555555554422444444433 PP

  == domain 2    score: 70.5 bits;  conditional E-value: 3.5e-23
   PF05241.7  27 lskrdrllflWflldaliHlvleGlfllnkasssaa......sqglfaqlwkeYakaDsRyltaDstvvslelltvlveGplallvayliakkkslrhilqivvsvaelyGgvlyfatewleglvksvelstsellylWvylvffnglWvviPlllliqsvkelk 185
                 ls++d++++l  ++ +l  ++++G++++++  + ++      +  +f  lw+ Y+  D+Ry  +D+++v+l++l +l+ Gpl+l+ ++++++ +++rh+  +v    +l   ++ f te   g+  +     +++ ++W+ +v +  +  +iPl +l+++   + 
  MMETSP0890-20130614|6556_1 504 LSRNDKVAILFGMIYGLGQIFFDGTYAIFNVLVRNHgqngrrRVPWFMALWRFYGNIDKRYHRSDNLIVVLNALSALILGPLCLVFVWMTYETRPARHLFGVVATALQLWTFIISFTTEARAGFRDCA--PIDDFAVFWLGFVGLSIVRFLIPLPILYNAASSII 666
                 788999999999999*999***********99999899998878899****************************************************************************76664..45678***********************9988775 PP

>> PF10766.4  Protein of unknown function (DUF2592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   1.6e-05     0.035      16      30 ..     510     524 ..     509     525 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
   PF10766.4  16 maviLGlIYGLGEvf 30 
                 +a++ G+IYGLG +f
  MMETSP0890-20130614|6556_1 510 VAILFGMIYGLGQIF 524
                 69**********998 PP

>> PF10177.4  Uncharacterised conserved protein (DUF2371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-05       0.2      11      65 ..     152     228 ..     133     272 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.8e-05
   PF10177.4  11 aakekkkakkkrkadvvvvrgklklvsasglvlilGvlvllvGiamavlGYwpk......................s 65 
                 ++k+ k++  ++  +v v+  + +l   s+ +l+ Gv +  +  + a   Y+ +                       
  MMETSP0890-20130614|6556_1 152 QMKDAKNRNDRQTRNVDVAVRQSRLALSSCSILMAGVGIAGIAYGAASTSYFVRrdiggaalapyllihscvsllvI 228
                 45555555555555666666677888888889999988888888888999998855555555555555555555551 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.15   3.5e+02     360     384 ..     328     352 ..     313     370 .. 0.63
   2 ?    8.6   0.1   0.00019      0.43     385     419 ..     690     719 ..     675     736 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.15
  PF02480.11 360 gaavlllvvlllvlvcvtkrrrrka 384
                 ++++lllvv++++l+c t++   ++
  MMETSP0890-20130614|6556_1 328 ASLALLLVVAMALLACGTIWISVHS 352
                 3445556666666666666555444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00019
  PF02480.11 385 yekrlspfspvYtsLPtnelvedvsedeesedeev 419
                 ++  +s +++vYt+LPtne     ++d    d+e+
  MMETSP0890-20130614|6556_1 690 RR-YFSSENTVYTTLPTNEASLPKEDD----DDEL 719
                 44.78999************3333333....3333 PP

>> PF04544.7  Herpesvirus egress protein UL20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.57   1.3e+03     107     155 ..      12      74 ..       6      81 .. 0.67
   2 ?    0.0   0.3      0.25   5.8e+02     102     159 ..     293     344 ..     272     357 .. 0.59
   3 ?   11.6   0.6     7e-05      0.16      26      99 ..     572     643 ..     567     686 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.57
   PF04544.7 107 vflvvayteiFaddelfakvlaaqakdktdalriv..............alavayllvialav 155
                 v + +  t +F   +l   v++aq +++t + r+                + +a++l++a ++
  MMETSP0890-20130614|6556_1  12 VVAQIPTTLVFLGLGLASLVMSAQGSADTFFVRSGgdtkirsqylalgtVGLIACFLLAAQII 74 
                 556666777888888888888888888888888778887776655555555555555555554 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.25
   PF04544.7 102 laraivflvvayteiFaddelfakvlaaqakdktdalrivalavayllvialavyaad 159
                 la  ++ + +a+ +iF+  +++++        ++ +  +++++ a llv+a+a+ a +
  MMETSP0890-20130614|6556_1 293 LALCLICICIALAQIFSVGNVVKRD------GDNRPQVARTASLALLLVVAMALLACG 344
                 3444566666666666666555432......222233334555566666666655554 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 7e-05
   PF04544.7  26 vvlflisalvlkplcclvflvYyritgdsrflvlglaitalyylrlalealllyrNikrDrLPLsklqqlllgl 99 
                 vvl ++sal+l plc++++ + y  t+  r  + g+++tal   ++++++    r   rD  P++ +  + lg+
  MMETSP0890-20130614|6556_1 572 VVLNALSALILGPLCLVFVWMTY-ETRPARH-LFGVVATALQLWTFIISFTTEARAGFRDCAPIDDFAVFWLGF 643
                 899***********987666554.4554443.346677777777777777666666666666666666555554 PP

>> PF09990.4  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0017       3.8      29      99 ..       9      81 ..       5      84 .. 0.75
   2 ?    0.3   0.1      0.34   7.8e+02      46      87 ..     186     227 ..     168     234 .. 0.67
   3 ?    2.1   0.3     0.092   2.1e+02      47      87 ..     292     340 ..     274     363 .. 0.59
   4 ?   -1.3   0.1       1.1   2.6e+03      55      82 ..     549     577 ..     510     595 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0017
   PF09990.4 29 laepsirakstallHaiggvlllalivvltvWryvlrlrdgeqvspsylalslv...vvllllvqgwlGaeLvy 99
                 a +  ++ +t+l++  +g++ l++ +  ++  +++r+  ++++   ylal++v   +++ll+ q  l ++L++
  MMETSP0890-20130614|6556_1  9 SA-HVVAQIPTTLVFLGLGLASLVMSAQGSADTFFVRSGGDTKIRSQYLALGTVgliACFLLAAQIILSSKLAA 81
                44.66777888888888888888888887888*****************9976611155677777777777765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.34
   PF09990.4  46 ggvlllalivvltvWryvlrlrdgeqvspsylalslvvvlll 87 
                  gv +++++   +   y++r + g +  + yl++   v ll+
  MMETSP0890-20130614|6556_1 186 AGVGIAGIAYGAASTSYFVRRDIGGAALAPYLLIHSCVSLLV 227
                 466666666665666899999999955555555554444444 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.092
   PF09990.4  47 gvlllalivvltvW......ryvlrlrdge.qvsps.ylalslvvvlll 87 
                 +++l ++ + +++       ++v r  d++ qv  +  lal lvv++ l
  MMETSP0890-20130614|6556_1 292 NLALCLICICIALAqifsvgNVVKRDGDNRpQVARTaSLALLLVVAMAL 340
                 4444444444443344555577777777776554430333333333333 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 1.1
   PF09990.4  55 vvltvWryvlrlrdge.qvspsylalslv 82 
                 +++++Wr++   +++  +   + ++l+++
  MMETSP0890-20130614|6556_1 549 WFMALWRFYGNIDKRYhRSDNLIVVLNAL 577
                 45677766555544443333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.93
# Mc/sec: 1927.39
//
Query:       MMETSP0890-20130614|6559_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-31  105.6  11.9    7.7e-11   41.3   0.2    4.2  4  PF13414.1  TPR repeat
    3.5e-23   79.4   9.7    0.00011   21.7   0.0    7.2  7  PF07719.12 Tetratricopeptide repeat
    2.2e-22   77.5  12.3    1.7e-05   24.0   0.0    7.2  7  PF00515.23 Tetratricopeptide repeat
    1.9e-16   58.7   8.6     0.0003   20.6   0.0    6.4  6  PF13431.1  Tetratricopeptide repeat
    1.1e-15   56.0  14.2     0.0016   17.9   0.0    6.3  7  PF13181.1  Tetratricopeptide repeat
    2.2e-14   53.0  18.5    1.8e-05   24.4   0.0    6.1  6  PF13424.1  Tetratricopeptide repeat
    4.9e-14   52.4   4.7    0.00021   21.7   0.0    4.3  4  PF13432.1  Tetratricopeptide repeat
    3.5e-13   48.8   6.6     0.0078   16.6   0.0    6.6  7  PF13428.1  Tetratricopeptide repeat
    1.1e-12   47.4   0.4    1.1e-05   25.0   0.0    3.2  3  PF13371.1  Tetratricopeptide repeat
    8.5e-11   40.7   4.6        0.7    9.7   0.0    6.2  6  PF13176.1  Tetratricopeptide repeat
    1.1e-08   34.8   8.6        2.7    8.5   0.0    6.3  6  PF13174.1  Tetratricopeptide repeat
      1e-07   31.2   3.7    0.00024   20.1   0.1    3.2  3  PF13429.1  Tetratricopeptide repeat
    4.2e-07   29.8  16.6      0.023   14.7   2.1    4.8  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0024   16.5   0.2     0.0043   15.7   0.1    1.5  1  PF12569.3  NMDA receptor-regulated protein 1
  ------ inclusion threshold ------
      0.063   12.3   1.7      0.097   11.7   0.3    1.9  2  PF04733.9  Coatomer epsilon subunit
      0.067   13.0   4.2         11    5.9   0.0    4.8  5  PF13374.1  Tetratricopeptide repeat
       0.49   10.2   9.3        7.5    6.3   0.3    4.4  4  PF04212.13 MIT (microtubule interacting and transport) domain
        0.8    9.0   4.0        1.8    7.8   1.0    2.4  2  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
        1.6    8.4  13.2         14    5.4   0.0    5.6  6  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   2.2   1.4e-07    0.0001      17      65 ..       2      48 ..       1      48 [. 0.93
   2 !   31.8   0.1   9.7e-11     7e-08       8      69 .]      26      86 ..      23      86 .. 0.92
   3 !   41.3   0.2   1.1e-13   7.7e-11       6      69 .]      92     154 ..      87     154 .. 0.94
   4 !   25.3   0.0   1.1e-08   7.9e-06       7      67 ..     162     221 ..     160     224 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.4e-07
   PF13414.1 17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65
                 +yd+Aieay+kA e++  n + + +lA++y+k++   + Al++y+ Al
  MMETSP0890-20130614|6559_1  2 SNYDQAIEAYKKANEINR-NEKTFIRLAKVYQKKN-LEKNALRAYQDAL 48
                59***************8.8*************86.8899*****9987 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 9.7e-11
   PF13414.1  8 elGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                +l+ ++ k++  ++A++ay+ Al+  p+na+l+   +laylklg+  ++  + ++kA++  P
  MMETSP0890-20130614|6559_1 26 RLAKVYQKKNLEKNALRAYQDALDCFPDNANLLTMVGLAYLKLGE-TQKSFDFLTKAIASEP 86
                789999999999********************************6.8999*******98766 PP

  == domain 3    score: 41.3 bits;  conditional E-value: 1.1e-13
   PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                   +lG  l ++gd d A+++y+ +  l+p+++ l++n+A a++++g ++ +A+++++kA++  P
  MMETSP0890-20130614|6559_1  92 ILALGSILQNNGDTDLALQKYRISAVLNPHCPRLWNNIAMALFQKG-KFISAIACLQKAHAAQP 154
                 5789******************************************.6***********99877 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 1.1e-08
   PF13414.1   7 kelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                 ++lG  ++++++y  A  +++  ++l+ n+a ++  lAla+ +l  d e+ +++++ A+++
  MMETSP0890-20130614|6559_1 162 FNLGIIHLHNQQYVSAFHYFSATTRLQTNYAPAFHYLALALAHLQ-DAESTRAAFHSAISI 221
                 699****************************************97.78**********987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00027      0.19      16      33 ..       3      20 ..       1      21 [. 0.91
   2 !   12.4   0.2   0.00015      0.11       4      34 .]      24      54 ..      22      54 .. 0.93
   3 !   13.4   0.0   6.9e-05      0.05       3      34 .]      57      88 ..      55      88 .. 0.90
   4 !    9.1   0.0    0.0016       1.1       5      33 ..      93     121 ..      90     122 .. 0.90
   5 !   21.7   0.0   1.5e-07   0.00011       1      32 [.     123     154 ..     123     155 .. 0.93
   6 !    7.8   0.0    0.0042         3       5      30 ..     162     187 ..     162     191 .. 0.87
   7 ?    3.3   0.0      0.12        83       2      30 ..     193     221 ..     192     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00027
                -HHHHHHHHHHHHHH-TT CS
  PF07719.12 16 dyeeAleafekAleldPn 33
                +y++A+ea++kA e++ n
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANEINRN 20
                8***********999976 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00015
                HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  4 lynlGlayyklgdyeeAleafekAleldPnn 34
                  +l+++y k++  + Al+a++ Al  +P+n
  MMETSP0890-20130614|6559_1 24 FIRLAKVYQKKNLEKNALRAYQDALDCFPDN 54
                5799*************************98 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 6.9e-05
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPnn 34
                +l + Glay+klg+ ++  +++ kA++ +P++
  MMETSP0890-20130614|6559_1 57 LLTMVGLAYLKLGETQKSFDFLTKAIASEPKH 88
                67788**********************99986 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                  +lG ++ ++gd + Al+ ++ +  l+P+
  MMETSP0890-20130614|6559_1  93 LALGSILQNNGDTDLALQKYRISAVLNPH 121
                 689******************99999997 PP

  == domain 5    score: 21.7 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 +++++n+++a++++g++  A+++++kA + +P
  MMETSP0890-20130614|6559_1 123 PRLWNNIAMALFQKGKFISAIACLQKAHAAQP 154
                 579************************99877 PP

  == domain 6    score: 7.8 bits;  conditional E-value: 0.0042
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   5 ynlGlayyklgdyeeAleafekAlel 30 
                 +nlG +++++++y  A ++f    +l
  MMETSP0890-20130614|6559_1 162 FNLGIIHLHNQQYVSAFHYFSATTRL 187
                 79*****************9876665 PP

  == domain 7    score: 3.3 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  a ++l+la+++l+d e  ++af  A+++
  MMETSP0890-20130614|6559_1 193 PAFHYLALALAHLQDAESTRAAFHSAISI 221
                 5889*********9998888888777776 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   2.1e-05     0.015      14      33 ..       1      20 [.       1      21 [. 0.87
   2 !   12.8   0.4   8.3e-05      0.06       3      34 .]      23      54 ..      22      54 .. 0.94
   3 !   13.1   0.0     7e-05      0.05       4      34 .]      58      88 ..      55      88 .. 0.87
   4 !    7.0   0.0    0.0056         4       6      33 ..      94     121 ..      90     122 .. 0.86
   5 !   24.0   0.0   2.4e-08   1.7e-05       2      30 ..     124     152 ..     123     154 .. 0.90
   6 ?    6.2   0.0      0.01       7.4       5      25 ..     162     182 ..     162     188 .. 0.92
   7 ?    0.9   0.0      0.47   3.4e+02       1      30 [.     192     221 ..     192     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-05
                TT-HHHHHHHHHHHHHHHTT CS
  PF00515.23 14 lgkydeAleyyekALelnPn 33
                + +yd+A+e+y+kA e+n n
  MMETSP0890-20130614|6559_1  1 MSNYDQAIEAYKKANEINRN 20
                679***********888876 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 8.3e-05
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALelnPnn 34
                ++ +l+ +y+k++  + Al +y+ AL   P+n
  MMETSP0890-20130614|6559_1 23 TFIRLAKVYQKKNLEKNALRAYQDALDCFPDN 54
                6789***********************99997 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 7e-05
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  4 lynlGnaylklgkydeAleyyekALelnPnn 34
                l   G+aylklg+ ++  ++  kA+  +P++
  MMETSP0890-20130614|6559_1 58 LTMVGLAYLKLGETQKSFDFLTKAIASEPKH 88
                56669********************988875 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0056
                 HHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   6 nlGnaylklgkydeAleyyekALelnPn 33 
                  lG +++++g+ d Al+ y+    lnP+
  MMETSP0890-20130614|6559_1  94 ALGSILQNNGDTDLALQKYRISAVLNPH 121
                 69***************99988888887 PP

  == domain 5    score: 24.0 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALel 30 
                 + ++n+++a++++gk+  A+++ +kA   
  MMETSP0890-20130614|6559_1 124 RLWNNIAMALFQKGKFISAIACLQKAHAA 152
                 78************************765 PP

  == domain 6    score: 6.2 bits;  conditional E-value: 0.01
                 HHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyye 25 
                 +nlG ++l++++y  A  y++
  MMETSP0890-20130614|6559_1 162 FNLGIIHLHNQQYVSAFHYFS 182
                 6***************99996 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                 a a+  l++a+ +l++ +   +++  A+++
  MMETSP0890-20130614|6559_1 192 APAFHYLALALAHLQDAESTRAAFHSAISI 221
                 568889999999999988888888888876 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.93   6.7e+02       2      27 ..      11      35 ..       3      41 .. 0.65
   2 !   20.5   0.1   4.5e-07   0.00032       1      31 [.      43      73 ..      43      74 .. 0.95
   3 !   20.6   0.0   4.1e-07    0.0003       2      34 .]      78     110 ..      77     110 .. 0.95
   4 ?    6.5   0.0     0.014        10       7      33 ..     117     143 ..     111     144 .. 0.80
   5 ?    1.8   0.0      0.43   3.1e+02      17      32 ..     162     177 ..     157     178 .. 0.88
   6 !    7.5   0.1    0.0064       4.6       7      30 ..     186     209 ..     180     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.93
   PF13431.1  2 yekaleldPnnadaynnLAelllnnG 27
                y+ka e++  n   + +LA+++++++
  MMETSP0890-20130614|6559_1 11 YKKANEIN-RNEKTFIRLAKVYQKKN 35
                55555555.44566667888887665 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 4.5e-07
   PF13431.1  1 lyekaleldPnnadaynnLAelllnnGdlee 31
                +y+ al++ P+na+++++ ++++l++G++++
  MMETSP0890-20130614|6559_1 43 AYQDALDCFPDNANLLTMVGLAYLKLGETQK 73
                69**************************987 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 4.1e-07
   PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAeq 34 
                 + ka++ +P++ da  +L+ +l+nnGd++ A+q
  MMETSP0890-20130614|6559_1  78 LTKAIASEPKHLDAILALGSILQNNGDTDLALQ 110
                 78****************************987 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.014
   PF13431.1   7 eldPnnadaynnLAelllnnGdleeAe 33 
                  l+P  + ++nn A +l+ +G++  A+
  MMETSP0890-20130614|6559_1 117 VLNPHCPRLWNNIAMALFQKGKFISAI 143
                 567777899************987776 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.43
   PF13431.1  17 nnLAelllnnGdleeA 32 
                 +nL+ ++l n+++  A
  MMETSP0890-20130614|6559_1 162 FNLGIIHLHNQQYVSA 177
                 8**********99765 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.0064
   PF13431.1   7 eldPnnadaynnLAelllnnGdle 30 
                 +l+ n+a+a+++LA++l+ ++d e
  MMETSP0890-20130614|6559_1 186 RLQTNYAPAFHYLALALAHLQDAE 209
                 57889************9998876 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.0   1.6e-05     0.011      16      33 ..       3      20 ..       1      22 [. 0.92
   2 !    9.3   0.3    0.0012      0.88       3      32 ..      23      52 ..      21      54 .. 0.88
   3 !   10.4   0.0   0.00057      0.41       2      32 ..      56      86 ..      55      88 .. 0.90
   4 ?    6.4   0.1      0.01       7.5       5      22 ..      93     110 ..      89     113 .. 0.88
   5 !   17.9   0.0   2.2e-06    0.0016       2      27 ..     124     149 ..     123     149 .. 0.96
   6 ?   -1.5   0.0       3.5   2.5e+03       5      24 ..     162     181 ..     162     183 .. 0.86
   7 ?   -1.5   0.0       3.6   2.6e+03       3      28 ..     194     219 ..     192     221 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-05
                -HHHHHHHHH---HHHH. CS
   PF13181.1 16 dydkAkeylekalelkpr 33
                +yd+A+e+++ka+e++++
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANEINRN 20
                9**************985 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0012
                -TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkp 32
                + ++l+++Y +++  ++A+ +++ al+  p
  MMETSP0890-20130614|6559_1 23 TFIRLAKVYQKKNLEKNALRAYQDALDCFP 52
                5789*********************99655 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00057
                --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelkp 32
                +++++ G++Y++lG++ k+  +l ka+   p
  MMETSP0890-20130614|6559_1 56 NLLTMVGLAYLKLGETQKSFDFLTKAIASEP 86
                789999********************99887 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.01
                 TT---HHHHTT-HHHHHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAke 22 
                 ++lG+i+ ++Gd+d+A++
  MMETSP0890-20130614|6559_1  93 LALGSILQNNGDTDLALQ 110
                 689*************85 PP

  == domain 5    score: 17.9 bits;  conditional E-value: 2.2e-06
                 --TTT---HHHHTT-HHHHHHHHH-- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeyleka 27 
                 ++++n++++++q+G++ +A+++l+ka
  MMETSP0890-20130614|6559_1 124 RLWNNIAMALFQKGKFISAIACLQKA 149
                 79***********************8 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 3.5
                 TT---HHHHTT-HHHHHHHH CS
   PF13181.1   5 ynlGdiYrqlGdydkAkeyl 24 
                 +nlG i++ + +y +A  y+
  MMETSP0890-20130614|6559_1 162 FNLGIIHLHNQQYVSAFHYF 181
                 69999999999998887776 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 3.6
                 -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekal 28 
                 a + l+++++ l d ++  +++  a+
  MMETSP0890-20130614|6559_1 194 AFHYLALALAHLQDAESTRAAFHSAI 219
                 55677888888888877666665555 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.7   5.8e-05     0.042      20      76 ..       3      51 ..       1      53 [. 0.87
   2 !   17.4   0.4     4e-06    0.0028       9      74 ..      25      83 ..      21      87 .. 0.92
   3 !   15.7   0.0   1.3e-05    0.0093       2      69 ..      52     112 ..      51     120 .. 0.85
   4 !   24.4   0.0   2.5e-08   1.8e-05       9      75 ..      93     152 ..      86     154 .. 0.90
   5 ?    2.9   0.0      0.13        94       9      28 ..     162     181 ..     157     188 .. 0.78
   6 !    7.7   0.8    0.0041         3       2      36 ..     189     223 ..     188     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.8e-05
   PF13424.1 20 dydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76
                +yd+A+e y+ka e+ +        +  ++   la +y++++  + Al+ +++Al+ +
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANEInR-------NE--KTFIRLAKVYQKKNLEKNALRAYQDALDCF 51
                89***********9933.......34..799************************966 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4e-06
   PF13424.1  9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74
                 +la v++++   + Al  y+ al+ +       pd a++l+  + +yl+lg+ +++ ++l kA++
  MMETSP0890-20130614|6559_1 25 IRLAKVYQKKNLEKNALRAYQDALDCF-------PDNANLLTMVGLAYLKLGETQKSFDFLTKAIA 83
                589*********************998.......777***************************97 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 1.3e-05
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                 pd a++l+  +l++++lg+ +++ +++ ka++         p  ++a + l+ +++  gd d Al+ +
  MMETSP0890-20130614|6559_1  52 PDNANLLTMVGLAYLKLGETQKSFDFLTKAIASE-------PKHLDAILALGSILQNNGDTDLALQKY 112
                 688999999**********************885.......444668888888899988888888755 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 2.5e-08
   PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                   l+ +l+  gd d Al+ y+ +  l       +p + r++nn+a ++ ++g++ +A+++l+kA+++
  MMETSP0890-20130614|6559_1  93 LALGSILQNNGDTDLALQKYRISAVL-------NPHCPRLWNNIAMALFQKGKFISAIACLQKAHAA 152
                 489*******************9866.......589****************************986 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.13
   PF13424.1   9 nnlalvlrrlgdydeAlely 28 
                 +nl+ ++++ ++y +A  ++
  MMETSP0890-20130614|6559_1 162 FNLGIIHLHNQQYVSAFHYF 181
                 57888888888888887776 PP

  == domain 6    score: 7.7 bits;  conditional E-value: 0.0041
   PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalellr 36 
                 +++a + ++lal+l +l+d ++ ++ +  a+ +++
  MMETSP0890-20130614|6559_1 189 TNYAPAFHYLALALAHLQDAESTRAAFHSAISIFS 223
                 5678899**********************999954 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1    0.0001     0.074      12      65 .]       3      55 ..       1      55 [. 0.91
   2 !   21.7   0.0   2.9e-07   0.00021       4      62 ..      62     120 ..      59     121 .. 0.94
   3 !   11.6   0.0   0.00043      0.31       4      54 ..     130     181 ..     127     192 .. 0.88
   4 ?    3.8   1.1      0.12        87      25      59 ..     186     220 ..     176     225 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.0001
   PF13432.1 12 dydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPddp 65
                +yd+A++a+++a + +  +   + +la ++ +++  + A+++++ al+  Pd++
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANEINR-NEKTFIRLAKVYQKKNLEKNALRAYQDALDCFPDNA 55
                89****99999999996.99**********9999999999***********986 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.9e-07
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62 
                 ++a+l++G+ ++  + l +a+a +P++ +a l+l+ +l   g+ d A++ +r  + l+P
  MMETSP0890-20130614|6559_1  62 GLAYLKLGETQKSFDFLTKAIASEPKHLDAILALGSILQNNGDTDLALQKYRISAVLNP 120
                 899*************************************************9988777 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00043
   PF13432.1   4 ArallraGdydeAlaaleaalalaPe.aaeallllaeallrlgrldeAaall 54 
                 A+al++ G++  A+a+l++a a++P+  +++ ++l+ ++l+  ++  A  ++
  MMETSP0890-20130614|6559_1 130 AMALFQKGKFISAIACLQKAHAAQPLgLWQIPFNLGIIHLHNQQYVSAFHYF 181
                 99**********************87799************99998876665 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.12
   PF13432.1  25 alaPeaaeallllaeallrlgrldeAaallraala 59 
                 +l+  +a a+ +la al++l + +  +a++ +a++
  MMETSP0890-20130614|6559_1 186 RLQTNYAPAFHYLALALAHLQDAESTRAAFHSAIS 220
                 55545899999*********888777788877765 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.23   1.6e+02      16      33 ..       3      20 ..       1      30 [. 0.72
   2 !   11.1   0.0   0.00063      0.45       6      40 ..      26      60 ..      21      62 .. 0.87
   3 !   16.6   0.0   1.1e-05    0.0078       2      43 ..      56      97 ..      55      98 .. 0.92
   4 !   12.8   0.0   0.00018      0.13       2      42 ..      90     130 ..      89     132 .. 0.91
   5 !   11.2   0.0   0.00057      0.41       1      32 [.     123     154 ..     123     159 .. 0.93
   6 ?    2.5   0.0      0.38   2.8e+02       6      42 ..     163     199 ..     157     201 .. 0.89
   7 ?    3.6   0.2      0.17   1.2e+02       3      30 ..     194     221 ..     192     229 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.23
   PF13428.1 16 dpdeAiallrralalaPd 33
                ++d+Ai+++++a + + +
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANEINRN 20
                79*********9665544 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00063
   PF13428.1  6 alarallalGdpdeAiallrralalaPddaealll 40
                +la ++   +  + A++++++al  +Pd+a +l++
  MMETSP0890-20130614|6559_1 26 RLAKVYQKKNLEKNALRAYQDALDCFPDNANLLTM 60
                78888888888899****************99876 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.1e-05
   PF13428.1  2 eallalarallalGdpdeAiallrralalaPddaealllLar 43
                ++l + + a+l lG++++  + l +a+a  P++++a l+L+ 
  MMETSP0890-20130614|6559_1 56 NLLTMVGLAYLKLGETQKSFDFLTKAIASEPKHLDAILALGS 97
                5778899********************************985 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 0.00018
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLa 42 
                 +a lal+ +l ++Gd+d A++ +r  + l+P+ ++++ + a
  MMETSP0890-20130614|6559_1  90 DAILALGSILQNNGDTDLALQKYRISAVLNPHCPRLWNNIA 130
                 689********************************996655 PP

  == domain 5    score: 11.2 bits;  conditional E-value: 0.00057
   PF13428.1   1 peallalarallalGdpdeAiallrralalaP 32 
                 p+++   a al++ G +  Aia+l++a a++P
  MMETSP0890-20130614|6559_1 123 PRLWNNIAMALFQKGKFISAIACLQKAHAAQP 154
                 6899999********************99988 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.38
   PF13428.1   6 alarallalGdpdeAiallrralalaPddaealllLa 42 
                  l++++l+++++  A  ++ +  +l+ + a a ++La
  MMETSP0890-20130614|6559_1 163 NLGIIHLHNQQYVSAFHYFSATTRLQTNYAPAFHYLA 199
                 6899*****************9999999999999998 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.17
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 a   la al++l+d +  +a++  a++ 
  MMETSP0890-20130614|6559_1 194 AFHYLALALAHLQDAESTRAAFHSAISI 221
                 5667999999999999999999999886 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.9e-06    0.0028      12      66 ..      38      92 ..      27      96 .. 0.90
   2 !   25.0   0.0   1.5e-08   1.1e-05       2      60 ..      96     154 ..      95     159 .. 0.94
   3 ?    1.8   0.0      0.28     2e+02       3      48 ..     166     211 ..     164     229 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.9e-06
   PF13371.1 12 erALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdae 66
                  AL++++  l + Pd + ++   Gl++ +lg+ +   + L+ +++++p + da 
  MMETSP0890-20130614|6559_1 38 KNALRAYQDALDCFPDNANLLTMVGLAYLKLGETQKSFDFLTKAIASEPKHLDAI 92
                679**********************************************999885 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.5e-08
   PF13371.1   2 kaiylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                  +i+++++d++ AL+ +  +++l+P+ p+++   +++l+q g +  A+++L+ + +  p
  MMETSP0890-20130614|6559_1  96 GSILQNNGDTDLALQKYRISAVLNPHCPRLWNNIAMALFQKGKFISAIACLQKAHAAQP 154
                 5899************************************************9987766 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.28
   PF13371.1   3 aiylreedferALavverllllaPddpyerRDrGlllaqlgclaaA 48 
                  i+l+++++ +A  +     +l+ + +      +l+la+l++ +  
  MMETSP0890-20130614|6559_1 166 IIHLHNQQYVSAFHYFSATTRLQTNYAPAFHYLALALAHLQDAEST 211
                 5899999999999998888888777444444455555555555444 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0025       1.8      13      27 ..       2      14 ..       1      22 [. 0.85
   2 ?    4.6   0.0      0.04        29       3      26 ..      25      48 ..      23      56 .. 0.83
   3 ?    5.4   0.0     0.022        16       6      33 ..      62      87 ..      57      90 .. 0.86
   4 !    9.7   0.0   0.00097       0.7       1      25 [.      91     115 ..      91     120 .. 0.89
   5 !    8.1   0.0    0.0031       2.2       2      27 ..     126     149 ..     125     156 .. 0.88
   6 ?   -0.7   0.1       2.1   1.5e+03       2      18 ..     197     213 ..     197     221 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0025
   PF13176.1 13 gdyekAielyeraLa 27
                 +y++Aie+y++  a
  MMETSP0890-20130614|6559_1  2 SNYDQAIEAYKK--A 14
                69*********9..4 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.04
   PF13176.1  3 lnLarlysrlgdyekAielyeraL 26
                 +La++y++ +  ++A+++y+ aL
  MMETSP0890-20130614|6559_1 25 IRLAKVYQKKNLEKNALRAYQDAL 48
                68*******999999999999955 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.022
   PF13176.1  6 arlysrlgdyekAielyeraLaltkdpl 33
                + +y +lg+++k  +++++  a++++p 
  MMETSP0890-20130614|6559_1 62 GLAYLKLGETQKSFDFLTK--AIASEPK 87
                679****************..9998886 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.00097
   PF13176.1   1 allnLarlysrlgdyekAielyera 25 
                 a+l+L+++ ++ gd++ A++ y+ +
  MMETSP0890-20130614|6559_1  91 AILALGSILQNNGDTDLALQKYRIS 115
                 689******************9975 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0031
   PF13176.1   2 llnLarlysrlgdyekAielyeraLa 27 
                 ++n+a + ++ g++  Ai ++++  a
  MMETSP0890-20130614|6559_1 126 WNNIAMALFQKGKFISAIACLQK--A 149
                 89********************9..6 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 2.1
   PF13176.1   2 llnLarlysrlgdyekA 18 
                 +l+La ++ ++ +  +A
  MMETSP0890-20130614|6559_1 197 YLALALAHLQDAESTRA 213
                 67888888887766665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.16   1.1e+02      15      25 ..       3      13 ..       1      16 [. 0.87
   2 !    8.4   0.1    0.0041         3       5      32 ..      26      53 ..      24      54 .. 0.89
   3 !    8.5   0.0    0.0038       2.7       6      33 .]      61      88 ..      58      88 .. 0.92
   4 ?    5.7   0.0     0.029        21       1      24 [.      90     113 ..      90     114 .. 0.91
   5 ?    5.8   0.0     0.027        19       5      28 ..     128     151 ..     128     154 .. 0.87
   6 ?    2.5   0.0       0.3   2.2e+02       2      28 ..     194     220 ..     194     223 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.16
                HHHHHHHHHHH CS
   PF13174.1 15 dtdeAlealer 25
                ++d+A+ea+++
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKK 13
                89*******98 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0041
                HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1  5 klalsyyklgdtdeAlealerlikeyPd 32
                +la++y+k +   +Al+a+++ ++ +Pd
  MMETSP0890-20130614|6559_1 26 RLAKVYQKKNLEKNALRAYQDALDCFPD 53
                79******87999********9998887 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0038
                HHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
   PF13174.1  6 lalsyyklgdtdeAlealerlikeyPdS 33
                 +l+y+klg+t+++ + l + i++ P++
  MMETSP0890-20130614|6559_1 61 VGLAYLKLGETQKSFDFLTKAIASEPKH 88
                69*****99**************99985 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   1 dAlyklalsyyklgdtdeAleale 24 
                 dA + l+ +++++gdtd Al+ ++
  MMETSP0890-20130614|6559_1  90 DAILALGSILQNNGDTDLALQKYR 113
                 78999*******99******9886 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 ++a+++++ g++  A++ l++  +
  MMETSP0890-20130614|6559_1 128 NIAMALFQKGKFISAIACLQKAHA 151
                 69******99**********9765 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                 A+ +lal++  l+d++  ++a+   i+
  MMETSP0890-20130614|6559_1 194 AFHYLALALAHLQDAESTRAAFHSAIS 220
                 566899999996699999999988876 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.4e-07   0.00024     131     183 ..       6      58 ..       1      61 [. 0.90
   2 !   10.6   0.0   0.00027       0.2     217     269 ..      58     110 ..      54     117 .. 0.90
   3 ?    0.7   0.0      0.28     2e+02      16      69 ..     166     217 ..     158     232 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.4e-07
   PF13429.1 131 ellasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpassdlr 183
                 + ++ +++ +++++++ +++++a+++++++ +k+Alr+++ al+ +p++++l 
  MMETSP0890-20130614|6559_1   6 QAIEAYKKANEINRNEKTFIRLAKVYQKKNLEKNALRAYQDALDCFPDNANLL 58 
                 567788889999************************************98875 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00027
   PF13429.1 217 wgpfaaayllLgrpkkALeylrkqaksnskdplwllaYADaleaaGradeAwr 269
                     + ayl+Lg+++k  ++l k  +s++k +   la   +l+ +G +d A++
  MMETSP0890-20130614|6559_1  58 LTMVGLAYLKLGETQKSFDFLTKAIASEPKHLDAILALGSILQNNGDTDLALQ 110
                 556789********************************************975 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.28
   PF13429.1  16 nllyakgdfkkAlevLksaadkaapskdeeyWrtladLAwalqdddtaraAyrq 69 
                  +++ ++++  A+    sa  + +++ + ++ ++  +LA  lqd +++raA   
  MMETSP0890-20130614|6559_1 166 IIHLHNQQYVSAFHYF-SATTRLQTNYAPAFHYLALALAH-LQDAESTRAAFHS 217
                 5788899999999999.66666667888899888888885.6777777777655 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.1   3.2e-05     0.023       3      83 ..       2      80 ..       1      81 [. 0.86
   2 !   13.4   0.0   7.9e-05     0.057      12      84 .]      78     149 ..      72     149 .. 0.81
   3 ?    4.5   1.8     0.046        33      30      67 ..     163     203 ..     159     206 .. 0.69
   4 ?    5.1   2.0     0.031        22       3      47 ..     172     216 ..     170     241 .. 0.65
   5 ?   -0.7   0.0         2   1.5e+03      37      70 ..     254     292 ..     245     293 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.2e-05
                T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
   PF12895.2  3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavLek 83
                 ny++A+  + k+ + +    +     +lA+++++ +  k A+ ++++ l+  + ++    + + ++lklg+ ++  + L k
  MMETSP0890-20130614|6559_1  2 SNYDQAIEAYKKANEINR---NEKTFIRLAKVYQKKNLEKNALRAYQDaLDCFPDNANLLTMVGLAYLKLGETQKSFDFLTK 80
                69***********99985...34556669*****************98999999998888899*********9998888876 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 7.9e-05
                 HHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHHHH CS
   PF12895.2  12 aekllaespkdpedaylyalAlclylngeykrAyellrkleldssslgcryll.ArcllklgkydeAiavLeka 84 
                 + k++a++pk  + ++++al+  l++ng+ + A++ +r   + + ++   +   A +l++ gk+  Aia+L+ka
  MMETSP0890-20130614|6559_1  78 LTKAIASEPK--HLDAILALGSILQNNGDTDLALQKYRISAVLNPHCPRLWNNiAMALFQKGKFISAIACLQKA 149
                 5688888884..45578888*************9999667777766566664448****************986 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.046
                 HHHHHHHH---HHHHHHHHHC.TSHCHCB.HHHHHHH.HHH CS
   PF12895.2  30 alAlclylngeykrAyellrk.leldsss.lgcryll.Arc 67 
                 +l+  +++n++y +A+++++    l+ +  ++ +yl+ A +
  MMETSP0890-20130614|6559_1 163 NLGIIHLHNQQYVSAFHYFSAtTRLQTNYaPAFHYLAlALA 203
                 567789*************7764444333366777666655 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.031
                 T-HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHH CS
   PF12895.2   3 hnyknAlflaekllaespkdp.edaylyalAlclylngeykrAyel 47 
                 ++y +A  ++     ++  +   + +++alAl++++ +e +rA + 
  MMETSP0890-20130614|6559_1 172 QQYVSAFHYFSATTRLQT-NYaPAFHYLALALAHLQDAESTRAAFH 216
                 566666666666666654.333445888899999999999666443 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 2
                 H---H.HHHHHHHHC...TSHCHCBHHHHHHH.HHHHHH CS
   PF12895.2  37 lngey.krAyellrk...leldssslgcryll.Arcllk 70 
                 + g++ ++A   +++     ld++sl++ ++  Ar+l++
  MMETSP0890-20130614|6559_1 254 EEGDFnHQAHSEFSQhikPFLDDKSLDADFIErARSLEQ 292
                 556666778777777787778889999999999999987 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     6e-06    0.0043     161     249 ..      22     109 ..       6     118 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6e-06
   PF12569.3 161 kileelveeyvkslessgklseee.dsekeppstllwalyflAqhydklgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAa 249
                 k++ +l++ y+k+  +++ l + +   +  p ++ l ++  lA  y klg+++k+ +++ kai+++p+ ++  ++ ++il++ Gd++ A 
  MMETSP0890-20130614|6559_1  22 KTFIRLAKVYQKKNLEKNALRAYQdALDCFPDNANLLTMVGLA--YLKLGETQKSFDFLTKAIASEPKHLDAILALGSILQNNGDTDLAL 109
                 5555666666665555555544442334445556555555555..899*************************************99886 PP

>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00014     0.097     146     258 ..       3     112 ..       1     132 [. 0.85
   2 ?   -1.6   0.0       1.5   1.1e+03     109     132 ..     165     188 ..     162     201 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
                 -HHHHHHHHHHHHHH-.TT-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHS---HHHH---HHHHHH---HHHH---HHHHHHH----HHHHHHHHHHHHH----HHHHHHH CS
   PF04733.9 146 rvdlAekelkkmqdid.edatltQLAqawvklavggekiqdAyyifqelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsern 258
                   d A +  kk+++i+ +++t   LA+ +    +  +  ++A+  +q+  + ++ +  ll+    + l+lg+ ++    L +a+ +++k+ +++  l    q++g  + + +++
  MMETSP0890-20130614|6559_1   3 NYDQAIEAYKKANEINrNEKTFIRLAKVY----QKKNLEKNALRAYQDALDCFPDNANLLTMVGLAYLKLGETQKSFDFLTKAIASEPKHLDAILALGSILQNNGDTDLALQKY 112
                 67889999999999974678999999765....44566689*****************************************************99999999999887777765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
                 HHHHHHTT-HHHHHHHHT----HH CS
   PF04733.9 109 aivflkegdfddalkllkksenLe 132
                 +i+ l+++++  a++  ++++ L+
  MMETSP0890-20130614|6559_1 165 GIIHLHNQQYVSAFHYFSATTRLQ 188
                 79999********99999888876 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0         1   7.2e+02      17      33 ..       3      19 ..       1      20 [. 0.87
   2 ?    2.5   0.0      0.18   1.3e+02       4      29 ..      57      82 ..      55      85 .. 0.83
   3 ?    0.7   0.1      0.65   4.7e+02       3      23 ..      90     110 ..      89     113 .. 0.83
   4 ?    5.9   0.0     0.016        11       6      30 ..     127     151 ..     124     153 .. 0.88
   5 ?   -2.2   0.0       5.3   3.8e+03       6      17 ..     196     207 ..     194     210 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1
   PF13374.1 17 ryeeAlaleeealairr 33
                +y++A + + +a +i r
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANEINR 19
                799**999999999987 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.18
   PF13374.1  4 alnnLAlalrargryeeAlaleeeal 29
                 l+ ++la+ ++g++++  +++ +a 
  MMETSP0890-20130614|6559_1 57 LLTMVGLAYLKLGETQKSFDFLTKAI 82
                67889***********9988887775 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.65
   PF13374.1   3 aalnnLAlalrargryeeAla 23 
                 +a   L+ +l++ g+++ Al+
  MMETSP0890-20130614|6559_1  90 DAILALGSILQNNGDTDLALQ 110
                 566779**********99986 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.016
   PF13374.1   6 nnLAlalrargryeeAlaleeeala 30 
                 nn+A+al++ g++  A a +++a a
  MMETSP0890-20130614|6559_1 127 NNIAMALFQKGKFISAIACLQKAHA 151
                 9***********9999999998877 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 5.3
   PF13374.1   6 nnLAlalrargr 17 
                 + LAlal+ + +
  MMETSP0890-20130614|6559_1 196 HYLALALAHLQD 207
                 678888887765 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3      0.01       7.5      20      33 ..       3      16 ..       2      18 .. 0.89
   2 ?    5.3   0.0     0.022        16      17      35 ..      32      51 ..      26      53 .. 0.89
   3 ?    0.6   0.0      0.67   4.8e+02       3      19 ..      72      88 ..      71     116 .. 0.60
   4 ?   -1.1   0.0       2.2   1.5e+03      20      38 ..     190     208 ..     188     222 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.01
                -HHHHHHHHHHHHH CS
  PF04212.13 20 kyeeAlelYkeAle 33
                +y++A+e+Yk+A e
  MMETSP0890-20130614|6559_1  3 NYDQAIEAYKKANE 16
                8**********966 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.022
                HTT-HHH.HHHHHHHHHHHH CS
  PF04212.13 17 eagkyee.AlelYkeAlelL 35
                +++++e+ Al++Y++Al+ +
  MMETSP0890-20130614|6559_1 32 QKKNLEKnALRAYQDALDCF 51
                57899999********9865 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.67
                HHHHHHHHHHHHHHHTT CS
  PF04212.13  3 skAlelikkAveaDeag 19
                +k++++++kA+  + ++
  MMETSP0890-20130614|6559_1 72 QKSFDFLTKAIASEPKH 88
                67778888887777654 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 2.2
                 -HHHHHHHHHHHHHHHHHH CS
  PF04212.13  20 kyeeAlelYkeAlelLlqa 38 
                 +y+ A+++   Al +L+ a
  MMETSP0890-20130614|6559_1 190 NYAPAFHYLALALAHLQDA 208
                 5555566655666665554 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.0    0.0025       1.8     100     150 ..       4      53 ..       1      88 [. 0.82
   2 ?    1.1   0.0      0.29   2.1e+02     115     168 ..     189     242 ..     169     294 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0025
   PF09986.4 100 YkLallcyelkkekkskkAklalrlAWlyrdledeekeklflkkAlelyke 150
                 Y  a+  y+  +e  ++  k+ +rlA +y++++ e++  + ++ Al+++ +
  MMETSP0890-20130614|6559_1   4 YDQAIEAYKKANE-INRNEKTFIRLAKVYQKKNLEKNALRAYQDALDCFPD 53 
                 6666666655444.3356689999*****9999999999999999999965 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.29
   PF09986.4 115 skkAklalrlAWlyrdledeekeklflkkAlelykeayekekfpiegideatvl 168
                 ++ A   + lA     l+d e+     + A++++   +  e +++++i+ + ++
  MMETSP0890-20130614|6559_1 189 TNYAPAFHYLALALAHLQDAESTRAAFHSAISIFSPNLDDELSSTHKINPLLLM 242
                 444555555555566677777777777788888877777777777777766633 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.019        14      16      30 ..       3      15 ..       1      19 [. 0.82
   2 ?    0.3   0.3      0.79   5.7e+02      10      19 ..      29      38 ..      28      45 .. 0.78
   3 ?    2.7   0.0      0.14     1e+02       2      33 ..      90     119 ..      89     121 .. 0.86
   4 ?    3.2   0.0     0.098        71       8      22 ..     130     144 ..     129     147 .. 0.84
   5 ?    0.4   0.1      0.76   5.5e+02      15      25 ..     172     182 ..     170     190 .. 0.84
   6 ?   -2.1   0.1       4.3   3.1e+03      16      33 ..     190     203 ..     183     204 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.019
                -HHHHHHH..HHHHH CS
   PF07720.7 16 kyqeArelfsYalla 30
                +y++A+e+  Y+ ++
  MMETSP0890-20130614|6559_1  3 NYDQAIEA--YKKAN 15
                8*******..88666 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.79
                HHHHTT-HHH CS
   PF07720.7 10 efynkkkyqe 19
                 +y+kk++++
  MMETSP0890-20130614|6559_1 29 KVYQKKNLEK 38
                68****9987 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHTT-HHHHHHH..HHHHHHH- CS
   PF07720.7   2 dylyslAaefynkkkyqeArelfsYallaild 33 
                 d + +l+  ++n ++ + A++   Y+ +a+l 
  MMETSP0890-20130614|6559_1  90 DAILALGSILQNNGDTDLALQK--YRISAVLN 119
                 566789***************9..99999885 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.098
                 HHHHHHTT-HHHHHH CS
   PF07720.7   8 AaefynkkkyqeAre 22 
                 A ++++k+k+  A+ 
  MMETSP0890-20130614|6559_1 130 AMALFQKGKFISAIA 144
                 6789*********85 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.76
                 T-HHHHHHH.. CS
   PF07720.7  15 kkyqeArelfs 25 
                 ++y  A ++fs
  MMETSP0890-20130614|6559_1 172 QQYVSAFHYFS 182
                 58999****99 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 4.3
                 -HHHHHHH..HHHHHHH- CS
   PF07720.7  16 kyqeArelfsYallaild 33 
                 +y  A ++    l+ +l+
  MMETSP0890-20130614|6559_1 190 NYAPAFHY----LALALA 203
                 67778888....666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.84
# Mc/sec: 861.55
//
Query:       MMETSP0890-20130614|6555_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 674.67
//
Query:       MMETSP0890-20130614|6560_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2709  (0.198142); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                        60  (0.00438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.37u 0.42s 00:00:04.79 Elapsed: 00:00:02.78
# Mc/sec: 591.33
//
Query:       MMETSP0890-20130614|6561_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-45  150.6  20.4    3.1e-09   36.2   0.1    8.5  8  PF00571.23 CBS domain
    1.8e-08   33.8   0.2    1.3e-07   31.0   0.1    2.6  2  PF00564.19 PB1 domain
  ------ inclusion threshold ------
      0.021   14.3   1.7       0.17   11.4   0.2    2.8  2  PF12324.3  Helix-turn-helix domain of alkylmercury lyase


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0082        37      20      54 ..       4      40 ..       2      43 .. 0.85
   2 !   22.8   0.0     1e-08   4.6e-05       1      36 [.      53      88 ..      53      93 .. 0.96
   3 !   13.5   0.0   8.6e-06     0.039      12      55 ..     178     220 ..     176     222 .. 0.85
   4 !   12.9   0.1   1.3e-05     0.057       2      40 ..     233     270 ..     232     281 .. 0.89
   5 !   25.0   0.1   2.1e-09   9.5e-06       7      55 ..     336     383 ..     329     385 .. 0.93
   6 !   26.7   0.0   6.2e-10   2.8e-06       2      48 ..     396     443 ..     395     449 .. 0.90
   7 !   17.0   0.2   6.7e-07    0.0031       1      55 [.     515     571 ..     515     573 .. 0.83
   8 !   36.2   0.1   6.7e-13   3.1e-09       1      47 [.     583     629 ..     583     635 .. 0.96

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0082
                HHHHHHHHHTTSEEEEEEET..TEB---EEHHHHHHH CS
  PF00571.23 20 ealeilrktgvsrlpVvDed..grlvGiitlrDllka 54
                ++ +++ k++ ++ ++   +    ++G++t++D+ ++
  MMETSP0890-20130614|6561_1  4 DVCQKMVKRRSDCCLILGSGseSVILGLVTDSDVTRR 40
                67889999999999999888878889*******9886 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1e-08
                HHHHCCSSCCEEETTSBHHHHHHHHHHHTTSEEEEE CS
  PF00571.23  1 vgdlmtkdvvtvppdetlsealeilrktgvsrlpVv 36
                ++++mt ++ +v+++ +  +al+++++ ++++lpV+
  MMETSP0890-20130614|6561_1 53 ISEIMTANPTCVEATSSALDALQLMINSRFRHLPVT 88
                589********************************8 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 8.6e-06
                 EETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHH CS
  PF00571.23  12 vppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkal 55 
                 ++ +++++ a + + +t+   +  vD +grlvGi++  D+l ++
  MMETSP0890-20130614|6561_1 178 LESTASVRTATQVMTQTRQA-IAAVDCEGRLVGILSPNDILVRV 220
                 67789999999999999775.777****************9776 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 1.3e-05
                 HHHCCSSCCEEETTSBHHHHHHHHHHHTTSEEEEEEETT CS
  PF00571.23   2 gdlmtkdvvtvppdetlsealeilrktgvsrlpVvDedg 40 
                 +++mt+++   +p++tl  +le + + ++   pVv +++
  MMETSP0890-20130614|6561_1 233 AEVMTTNPQRTTPTATLFSVLEQMHDGRFLTCPVV-DGN 270
                 79*********************************.554 PP

  == domain 5    score: 25.0 bits;  conditional E-value: 2.1e-09
                 SSCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHH CS
  PF00571.23   7 kdvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkal 55 
                 +++v+v+ +++++e  +++ k++ ++++V+ +d  l Gi+t++D+ + +
  MMETSP0890-20130614|6561_1 336 RRPVVVSCSTSIAELCSLMLKRRTDCALVT-NDASLSGIVTDTDIARKV 383
                 499***************************.**************9986 PP

  == domain 6    score: 26.7 bits;  conditional E-value: 6.2e-10
                 HHHCCSSCCEEETTSBHHHHHHHHHHHTTSEEEEEEET..TEB---EEH CS
  PF00571.23   2 gdlmtkdvvtvppdetlsealeilrktgvsrlpVvDed..grlvGiitl 48 
                 + +mt+++ +v  +++  + l+++ ++++++lpV  ++  g++vGi+ +
  MMETSP0890-20130614|6561_1 396 ECIMTPKPACVLGTDSALDSLKLMVSNRFRHLPVL-DRvnGKIVGILNI 443
                 569********************************.6668******865 PP

  == domain 7    score: 17.0 bits;  conditional E-value: 6.7e-07
                 HHHHCCSSCCE..EETTSBHHHHHHHHHHHTTSEEEEEEET.TEB---EEHHHHHHHH CS
  PF00571.23   1 vgdlmtkdvvt..vppdetlsealeilrktgvsrlpVvDed.grlvGiitlrDllkal 55 
                 vgd++ k+ vt  v++ +++++a+ei++ t+   ++ +De+ g +vGi++ +D+  ++
  MMETSP0890-20130614|6561_1 515 VGDAIVKNSVTavVSALAPVRRAAEIMATTRCA-VLAIDEEtGAVVGILSPKDIAHRV 571
                 67777887777445555*************996.777*9***************9876 PP

  == domain 8    score: 36.2 bits;  conditional E-value: 6.7e-13
                 HHHHCCSSCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EE CS
  PF00571.23   1 vgdlmtkdvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiit 47 
                 v+++ t+d+ t+++d++l eal++++++++++lpVvD  g+++G++ 
  MMETSP0890-20130614|6561_1 583 VEEVFTPDPDTINADASLLEALQMMSDRHYGHLPVVDAQGEVAGVVD 629
                 78999*******************************999******95 PP

>> PF00564.19  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.3   5.8e+03      14      34 ..     337     357 ..     335     374 .. 0.73
   2 !   31.0   0.1   2.9e-11   1.3e-07      18      79 ..     718     776 ..     704     780 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.3
                 EEEEETSSS-HHHHHHHHHHH CS
  PF00564.19  14 rilsvssnisfeeLrskveqr 34 
                 r + vs ++s  eL+s++ +r
  MMETSP0890-20130614|6561_1 337 RPVVVSCSTSIAELCSLMLKR 357
                 556777788888998888766 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 2.9e-11
                 ETSSS-HHHHHHHHHHHCTB-GSSEEEEEEETTCSEEEE-SHHHHHHHHHHHHHTTTCSEEE CS
  PF00564.19  18 vssnisfeeLrskveqrfklsdedvklkYpdedgdlvtitsdeDLkeaveearslksktlrl 79 
                  +s+ +f+++ + v +r++   + v+l Y+dedgd v +t+d  L +av +ars ++++l+l
  MMETSP0890-20130614|6561_1 718 QASDENFTQVTQSVVKRLQV--SAVHLTYQDEDGDDVVLTDDHSLVDAVAYARS-SGRPLKL 776
                 467889**************..7******************************9.6667776 PP

>> PF12324.3  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.7e-05      0.17       2      75 ..     126     209 ..     125     211 .. 0.72
   2 ?    0.6   0.0     0.084   3.8e+02      14      66 ..     491     548 ..     483     562 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.7e-05
                 -..-----------------------HHHHHHH----B-HHHH-----......--HHHHHHHHT...T.--SS.-B-----B-- CS
   PF12324.3   2 ktelakrleellakgeaakesawLlrpLLrsLakGrpVtveslanatg......ktveeVkkvLa...q.apsv.eydedgrivG 75 
                 k+ +a+ + e +++g ++ ++a +  pLL sL   ++ tv++l +a +       + ++V+++ +   q ++ +  +d +gr vG
  MMETSP0890-20130614|6561_1 126 KQRIAETVLEVVKSG-KTVGTAAVIAPLLESLTSDKAATVSTLLEAEDrsncilESTASVRTATQvmtQtRQAIaAVDCEGRLVG 209
                 889999999999999.6*******************************7777774455555433300021333323566666666 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.084
                 --------------HHHHHH....H----B-HHHH-----..--HHHHHHHHTT--SS- CS
   PF12324.3  14 akgeaakesawLlrpLLrsL....akGrpVtveslanatg..ktveeVkkvLaqapsve 66 
                 +++  +++ a++l pLL sL    + G+++ ++s+ + +    +v + ++++a+    +
  MMETSP0890-20130614|6561_1 491 KSV-DPNQLAKMLGPLLDSLdgqkRVGDAIVKNSVTAVVSalAPVRRAAEIMATTRCAV 548
                 455.4999999999999999444455777777777766666677888888877765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       908  (0.0664131); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.33u 0.33s 00:00:01.66 Elapsed: 00:00:01.04
# Mc/sec: 1947.04
//
Query:       MMETSP0890-20130614|6565_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.3   0.9    2.5e-07   30.2   0.0    2.1  2  PF06384.6  Beta-catenin-interacting protein ICAT
     0.0015   18.1   8.7     0.0033   17.0   0.1    2.4  2  PF05120.7  Gas vesicle protein G
  ------ inclusion threshold ------
      0.023   13.5   2.2      0.034   12.9   1.5    1.2  1  PF04111.7  Autophagy protein Apg6
      0.034   12.8   0.2      0.036   12.7   0.2    1.1  1  PF01093.12 Clusterin
      0.047   12.8   3.8       0.33   10.0   0.8    2.1  2  PF09325.5  Vps5 C terminal like
       0.13   12.4   2.7       0.36   11.0   1.9    1.8  1  PF02697.9  Uncharacterized ACR, COG1753


Domain annotation for each model (and alignments):
>> PF06384.6  Beta-catenin-interacting protein ICAT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.11   2.5e+02       3      57 ..      14      68 ..      12      85 .. 0.65
   2 !   30.2   0.0   1.1e-10   2.5e-07       4      45 ..     122     163 ..     119     178 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
   PF06384.6  3 RdlavGklsedvYiqQkveiLlaLkKlgekLtpeeeaFLsenagaalsqfekvse 57
                R +   k  ++   +Q  ++L+ L+ l+      + +  +e ++ ++ q+e   e
  MMETSP0890-20130614|6565_1 14 RGVDETKRLKESIEKQLNRLLMQLQDLEDFRDELDDEEYAETKAETMQQLEEFEE 68
                5555556666666788899999999997654444444445556667777777655 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 1.1e-10
   PF06384.6   4 dlavGklsedvYiqQkveiLlaLkKlgekLtpeeeaFLsena 45 
                 d  +G++s d ++  +veiLlaL+Klge L+ ee++ Ls + 
  MMETSP0890-20130614|6565_1 122 DRRLGRISDDGFNSLSVEILLALQKLGEPLSSEEKNILSLHH 163
                 7899********************************998765 PP

>> PF05120.7  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.0     0.035        80      31      70 ..      24      68 ..      14      78 .. 0.73
   2 !   17.0   0.1   1.4e-06    0.0033      29      70 ..     108     149 ..     103     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.035
   PF05120.7 31 enlrkeLaeLqlele.....aGeIseeeFdrrEeeLLdrlealkr 70
                e ++k+L +L ++l+     + e+++ee+ +   e +++le+ ++
  MMETSP0890-20130614|6565_1 24 ESIEKQLNRLLMQLQdledfRDELDDEEYAETKAETMQQLEEFEE 68
                566667666666665222234789999999999999999998876 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.4e-06
   PF05120.7  29 dpenlrkeLaeLqleleaGeIseeeFdrrEeeLLdrlealkr 70 
                 +p++lr++La+L     +G Is++ F+    e+L+ l++l +
  MMETSP0890-20130614|6565_1 108 EPDALRAKLASLREDRRLGRISDDGFNSLSVEILLALQKLGE 149
                 899***********************************9987 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.5   1.5e-05     0.034      70     143 ..      21      88 ..       8     100 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  70 seldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelkslelqle 143
                 + ++ ++k+ +rll +l++le+ +d+ld+      ee  + ++e  q l+e+++  +  ++l  el+s++l ++
  MMETSP0890-20130614|6565_1  21 RLKESIEKQLNRLLMQLQDLEDFRDELDD------EEYAETKAETMQQLEEFEESFRGDMTLVSELNSVQLAIQ 88 
                 33444555666666666666666666654......344556666666666666666666777777777666665 PP

>> PF01093.12  Clusterin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.6e-05     0.036     107     226 ..      25     145 ..       3     181 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
  PF01093.12 107 lvgrqleeflnrsspflilingddikslleedeqqdlqlddledsfsqleddvdelfndslkvfkqmqqefdqafqssff..lepslfpavekelakkksrlvrsllplslleslgleelfq 226
                 ++++ql+++l +++    + ++ d ++  e + +  +ql++ e+sf      v el   +l + + ++q f+++   ++f   ep  + a+  +l++ + rl r   + +++ s+++  ++q
  MMETSP0890-20130614|6565_1  25 SIEKQLNRLLMQLQDLEDFRDELDDEEYAETKAETMQQLEEFEESFRGDMTLVSELNSVQLAIQGAIRQAFRTPEVIKMFakREPDALRAKLASLREDR-RLGRISDDGFNSLSVEILLALQ 145
                 68899999999999999999999999999999*************************************998766555553666766655555554443.3555545555555555555555 PP

>> PF09325.5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8   0.00014      0.33      34      95 ..      24      88 ..      16      98 .. 0.84
   2 ?    3.4   0.0     0.015        33      34      74 ..     145     186 ..     134     192 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
   PF09325.5 34 dslesqLkklykalellvsqrkeLa..sataelakslesLasvels.kslsealsqLaeveekik 95
                +s+e+qL +l + l++l++ r eL   ++++  a+++++L ++e+s ++  ++ s+L  v+  i+
  MMETSP0890-20130614|6565_1 24 ESIEKQLNRLLMQLQDLEDFRDELDdeEYAETKAETMQQLEEFEESfRGDMTLVSELNSVQLAIQ 88
                789*********************6326778899***********97777888899999988876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.015
   PF09325.5  34 dslesqLkklykalell.vsqrkeLasataelakslesLasv 74 
                 ++l + L++ +k + +l  ++r +++sa +++++s+ sLa  
  MMETSP0890-20130614|6565_1 145 QKLGEPLSSEEKNILSLhHEHRDAFVSAGDDFTDSAVSLAHA 186
                 55666677777777666257999****************975 PP

>> PF02697.9  Uncharacterized ACR, COG1753
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.9   0.00016      0.36      18      69 ..      20      68 ..      16      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00016
   PF02697.9 18 KkekkSFSevIeeLiekkgnkkkLkevfGilseeeaeelekevkeerkkfre 69
                K+ k+S    +++L+    + ++L+++  +l++ee++e++ e+++++ +f+e
  MMETSP0890-20130614|6565_1 20 KRLKESIEKQLNRLLM---QLQDLEDFRDELDDEEYAETKAETMQQLEEFEE 68
                5556777778888888...99*************************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1038  (0.0759216); expected 273.4 (0.02)
Passed bias filter:                      734  (0.0536864); expected 273.4 (0.02)
Passed Vit filter:                        99  (0.00724108); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.68
# Mc/sec: 683.67
//
Query:       MMETSP0890-20130614|6564_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 390.64
//
Query:       MMETSP0890-20130614|6566_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.2   0.1    3.6e-05   23.7   0.1    1.8  1  PF00847.15 AP2 domain
  ------ inclusion threshold ------
       0.57   10.3   5.1       0.26   11.4   0.7    2.3  2  PF00954.15 S-locus glycoprotein family


Domain annotation for each model (and alignments):
>> PF00847.15  AP2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   5.2e-09   3.6e-05       1      52 [.      47      93 ..      47      94 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 5.2e-09
  PF00847.15  1 sgykGVrwdkkrgrWvAeirdpsengkr.krfslgkfgt.eeAakaaiaarkkl 52
                s++kGV++    grW++ i        + k+ ++g+++t  eAa a +  + +l
  MMETSP0890-20130614|6566_1 47 SQFKGVYYVL-GGRWESKITY------QsKTRHIGTYDTeLEAAFAFDTKAHEL 93
                789****988.9******999......44**********88***9999888775 PP

>> PF00954.15  S-locus glycoprotein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   3.8e-05      0.26       7      81 ..     142     215 ..     138     220 .. 0.85
   2 ?   -0.6   0.1       0.2   1.4e+03      29      61 ..     311     343 ..     286     359 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.8e-05
  PF00954.15   7 ngvrFsgipemqklsylvysftenkeevaytysvtnnsilsrlvlssegslerltwteksqewnlllsapkdeCd 81 
                 n+++F  +p++q+   + +  +++++ vay+ ++++ + + r  l  +++ +++  +++sqe +    + +++C 
  MMETSP0890-20130614|6566_1 142 NNQQFPQFPQQQSS-AMAQLEQQTAQAVAYANQMQQAHAMARAHLMRQEQAQQQVQEKQSQEKKEQGGQHTTSCG 215
                 67899999999854.454445689999***************************999999999999999999996 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.2
  PF00954.15  29 enkeevaytysvtnnsilsrlvlssegslerlt 61 
                  ++++ + +y  ++n++l + +l+++   +++ 
  MMETSP0890-20130614|6566_1 311 VTAHQQYHQYISAQNQKLRQHQLQQQKLASQIV 343
                 455666666666667777777776666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2404  (0.175834); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:01.19
# Mc/sec: 1061.24
//
Query:       MMETSP0890-20130614|6568_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-14   54.3   4.0    3.6e-14   52.6   2.5    1.9  2  PF02656.10 Domain of unknown function (DUF202)
  ------ inclusion threshold ------
      0.099   12.0   1.5        1.1    8.6   0.1    2.1  2  PF05978.11 Ion channel regulatory protein UNC-93


Domain annotation for each model (and alignments):
>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   2.5   5.3e-18   3.6e-14       1      72 [.      64     127 ..      64     128 .. 0.93
   2 ?   -0.4   0.0      0.18   1.2e+03      47      58 ..     145     156 ..     130     164 .. 0.66

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 5.3e-18
  PF02656.10   1 rdhlAnERTfLaWlRtslalaavglallrlflldhssssasrnaakilglllialailtllygivrylrrkk 72 
                 ++++AnERTfLaWl+++l l+++g++++ +           r+++++ g++l+ +a+++ +y++++y  r++
  MMETSP0890-20130614|6568_1  64 KVWFANERTFLAWLHMALILGGIGIGIISFSEK--------RGWSAAYGFVLLPVAMAFVIYALRQYYFRAH 127
                 579***************************877........88***********************987765 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.18
  PF02656.10  47 ilglllialail 58 
                 +l+++li+++i 
  MMETSP0890-20130614|6568_1 145 ALAIILILATIT 156
                 556666666554 PP

>> PF05978.11  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.01        68     131     151 ..      74      94 ..      67     100 .. 0.77
   2 ?    8.6   0.1   0.00016       1.1      24      61 ..     127     164 ..     108     166 .] 0.90

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.01
  PF05978.11 131 wallkssLiiGgiflifvfql 151
                  a l+++Li+Ggi + ++ + 
  MMETSP0890-20130614|6568_1  74 LAWLHMALILGGIGIGIISFS 94 
                 56789********99988443 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00016
  PF05978.11  24 eslaerdpdkiearaGYyslaiiyavftvsclvapsvv 61 
                 +++ +r+p+  e r+G y+laii+   t++++v+ ++ 
  MMETSP0890-20130614|6568_1 127 HAIRNREPGPYEDRNGPYALAIILILATITNVVIHFIA 164
                 67889999************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 473.57
//
Query:       MMETSP0890-20130614|6571_1  [L=1183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-14   51.8   7.8    1.1e-13   50.8   5.4    1.5  1  PF12906.2 RING-variant domain
  ------ inclusion threshold ------
      0.013   15.0   5.4      0.024   14.2   3.7    1.4  1  PF13920.1 Zinc finger, C3HC4 type (RING finger)
      0.036   13.6   6.3      0.073   12.7   4.4    1.5  1  PF13639.1 Ring finger domain
        0.7    9.2   5.0        1.7    8.0   3.5    1.6  1  PF06752.7 Enhancer of Polycomb C-terminus


Domain annotation for each model (and alignments):
>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   5.4   3.1e-17   1.1e-13       1      47 []      55      99 ..      55      99 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 3.1e-17
                ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
   PF12906.2  1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47
                CriC+ +  + + l +pC+C+Gs+k+vHe+Cl+ Wl+++++ kCelC
  MMETSP0890-20130614|6571_1 55 CRICRSS--DGNVLYMPCRCRGSIKYVHEDCLTAWLNHKGTDKCELC 99
                *****99..44579********************************* PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.7   6.9e-06     0.024       2      44 ..      52     100 ..      51     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.9e-06
   PF13920.1   2 kktCvvClereadvlllpCgHl....clCeeCaerllk..rkkkCpiCr 44 
                 +k+C++C++++ +vl++pC++     ++ e+C +++l+   + kC +C 
  MMETSP0890-20130614|6571_1  52 EKECRICRSSDGNVLYMPCRCRgsikYVHEDCLTAWLNhkGTDKCELCS 100
                 789****************986333379********99889999*9996 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.4   2.1e-05     0.073       2      43 ..      54      99 ..      53     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-05
   PF13639.1  2 eCaiCldelsegeevvrlpCg.....HvfHeeCldewlrss..nsCPlC 43
                eC iC ++     +v  +pC+      + He+Cl +wl+++  ++C lC
  MMETSP0890-20130614|6571_1 54 ECRICRSSD---GNVLYMPCRcrgsiKYVHEDCLTAWLNHKgtDKCELC 99
                8******94...588888884445669************9844599999 PP

>> PF06752.7  Enhancer of Polycomb C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.5   0.00048       1.7       4      45 ..     613     653 ..     610     664 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00048
   PF06752.7   4 aEqyqqHqeqLvlmqkqqlaqlqqkqlqqnssaatatqalvs 45 
                 + qy +H e L+l++  q +q +q+++++++ ++t+++++ s
  MMETSP0890-20130614|6571_1 613 QQQYENHTEELILVKE-QQQQEEQQEMKSSNITNTKEPEFSS 653
                 57************99.5578888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       849  (0.0620977); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.68u 0.39s 00:00:02.06 Elapsed: 00:00:01.73
# Mc/sec: 1638.66
//
Query:       MMETSP0890-20130614|6584_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-44  150.2   0.0    7.8e-44  149.5   0.0    1.3  1  PF01434.13 Peptidase family M41
    3.1e-43  147.0   0.0    6.5e-43  145.9   0.0    1.6  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.8e-05   25.3   0.0    6.8e-05   23.5   0.0    2.0  1  PF13207.1  AAA domain
    2.5e-05   23.3   0.0    0.00013   21.0   0.0    2.2  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    2.5e-05   24.5   1.9    0.00026   21.2   0.1    3.2  3  PF13191.1  AAA ATPase domain
    0.00018   21.5   0.0      0.013   15.4   0.0    2.7  1  PF13401.1  AAA domain
    0.00047   19.7   2.5    0.00054   19.5   0.1    2.5  1  PF13245.1  Part of AAA domain
    0.00063   18.4   0.0    0.00099   17.8   0.0    1.2  1  PF06068.8  TIP49 C-terminus
     0.0014   18.2   0.2     0.0078   15.8   0.1    2.2  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0019   17.9   0.0     0.0066   16.2   0.0    2.0  1  PF13671.1  AAA domain
     0.0032   16.7   0.0     0.0074   15.6   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
       0.01   15.6   0.3      0.033   14.0   0.0    2.0  2  PF13521.1  AAA domain
      0.028   13.6   1.3       0.79    8.9   0.1    2.5  2  PF13481.1  AAA domain
      0.037   13.0   0.1      0.076   12.0   0.1    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.038   13.7   0.0       0.09   12.5   0.0    1.6  1  PF07724.9  AAA domain (Cdc48 subfamily)
      0.061   13.5   0.1       0.19   11.9   0.0    1.9  2  PF13238.1  AAA domain
       0.12   12.0   0.0       0.33   10.7   0.0    1.7  1  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.0   9.6e-47   7.8e-44       2     211 ..     414     638 ..     413     640 .. 0.82

  Alignments for each domain:
  == domain 1    score: 149.5 bits;  conditional E-value: 9.6e-47
                 CHHHHHCCHHHH------XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX.XXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX.XXX..XXXXXX.XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF01434.13   2 mkeleeaidrvlaGlekksrvi..sekekklvAyHEaGHalvglllkeadpveKvtiiPR.gq.alGltlflpeedkll........ltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmsek.lGpvaleeeeee..evflgr.elkkekelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeie 211
                  k+l++a+drv  Gl k +++   s +++ l AyHEaGHalvg+l+++ dp+eKv+++   g+  lG t+f   +d+++        ++ ++l + +a++l+Gr+aEe++fg devttG++nDl+k+ +lar+mv+++G++++ +  ++   + ++  +  + +    +++  s++t++ +d+ v +l+++ay+++++il ++r  l+ +aeaLle+Et+da  ++
  MMETSP0890-20130614|6584_1 414 RKDLDRALDRVTLGLPKSNALFtsSPAARALCAYHEAGHALVGTLMPGFDPIEKVSLVQTtGRsELGATVFRSVDDDHHadtgsfghYSFTYLCSLLATTLAGRVAEEIVFGYDEVTTGSANDLQKARTLARNMVQRWGFADEaIHSLNPAPT-AWlpDETSPElYAFRRHFASPQTETFLDQAVAALIKHAYRSCRSILIKERPFLNVVAEALLEYETIDAITFN 638
                 689**************98876225689*****************************975255789****998887765333334446778999***********************************************962333332222.11111122220334566789***********************************************97776 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   8.1e-46   6.5e-43       1     131 [.     218     352 ..     218     353 .. 0.95

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 8.1e-46
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 vll GppGtGKTlla+ava e+gv+f+++sgs++++++vg ++++ir+lf++ak+ka psi+fiDE+da++++r       ++++e+e ++nq+lte+dg+  + s viv++atnrp+ ld allr gRfdr++ +e
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAGEAGVPFISTSGSQFVEMFVGVGASRIRDLFQQAKKKA-PSIIFIDELDAIGRQRsgasaGFAANDEREATLNQILTEMDGFHGH-SGVIVLAATNRPEILDAALLRpGRFDRRVLLE 352
                 79******************************************************9.****************98865445899******************7.55*************************99765 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.5e-08   6.8e-05       2      60 ..     218     286 ..     218     366 .. 0.56

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 8.5e-08
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG..B-.........-GGGS-B-----B--.....SSGGGB-HHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..ll.........reeglkelddgeres.....kdadadllaai 60 
                 +++ GppG+GK+ la+++a + g+p +s++   ++         r ++l         +      ++ +d+l+ai
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAGEAGVPFISTSGsqFVemfvgvgasRIRDLFQQ------AkkkapSIIFIDELDAI 286
                 6899***********************9999533244433333322222211......11111234444444444 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   2.3e+03     113     138 ..     104     129 ..      99     137 .. 0.81
   2 !   21.0   0.0   1.6e-07   0.00013      52     111 ..     217     284 ..     197     291 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.9
   PF05496.7 113 lsraveevlysamedfkldivigkGp 138
                 l r +e+++ +a++ ++++ +i++ +
  MMETSP0890-20130614|6584_1 104 LGRGTEDLILNAINKYNIEYMIERRQ 129
                 5577899999*********9998765 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.6e-07
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgPvlek......agdlaalltnleek..dvlfideih 111
                  vll GpPG Gkt la+ +a e gv + +tsg           a+ +  l+++ ++k   ++fide+ 
  MMETSP0890-20130614|6584_1 217 GVLLEGPPGTGKTLLARAVAGEAGVPFISTSGSQFVEmfvgvgASRIRDLFQQAKKKapSIIFIDELD 284
                 59*****************************9864331111112334444444443322678888776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   3.2e-07   0.00026      22      88 ..     213     276 ..     193     327 .. 0.68
   2 ?    0.1   0.0       1.1   8.5e+02     108     148 ..     431     498 ..     368     518 .. 0.52
   3 ?   -0.5   0.0       1.6   1.3e+03      42     103 ..     517     568 ..     504     629 .. 0.59

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.2e-07
   PF13191.1  22 gsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn....lpysaiiqa..lrellrqlltelaa 88 
                 + p  +l+ Gp+G+GK+ L+r++a     +++ f++   +q+ +             a  +r+l++q   +  +
  MMETSP0890-20130614|6584_1 213 RPPgGVLLEGPPGTGKTLLARAVA---GEAGVPFISTSGSQFVEMfvgvG-------AsrIRDLFQQAKKKAPS 276
                 23359*****************44...44455555555555555543330.......24477777777666555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.1
   PF13191.1 108 legiiglqalvalldaalartr...........................rpklvlvlDDlqwadresl 148
                 ++ + ++++++++l a ++ ++                            + +   +DD ++ad+ s 
  MMETSP0890-20130614|6584_1 431 SNALFTSSPAARALCAYHEAGHalvgtlmpgfdpiekvslvqttgrselGATVFRSVDDDHHADTGSF 498
                 33333344444444444444444444555555555555555554433321115556788888888776 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.6
   PF13191.1  42 elakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga 103
                 ++a++i++   ++++g  ++l+           +r+l+r+  ++ + + ++ ++   a ++ 
  MMETSP0890-20130614|6584_1 517 RVAEEIVFGYDEVTTGSANDLQK----------ARTLARNMVQRWGFADEAIHSLNPAPTAW 568
                 43333333333333333333333..........66666666666666655555554444444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05     0.013       5      42 ..     216     243 ..     212     333 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvf 42 
                 g +++ G++G+GKT+l+r +a ++           v f
  MMETSP0890-20130614|6584_1 216 GGVLLEGPPGTGKTLLARAVAGEA----------GVPF 243
                 567999*************99854..........3333 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   6.7e-07   0.00054      10      34 ..     216     238 ..     208     267 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.7e-07
   PF13245.1  10 npllvvtGgPGtGKTttlaaiiaal 34 
                  ++ ++ G+PGtGKT +la+++a  
  MMETSP0890-20130614|6584_1 216 GGV-LLEGPPGTGKT-LLARAVAGE 238
                 445.55*********.777777654 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06   0.00099      52      89 ..     217     252 ..     185     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.2e-06
   PF06068.8  52 avLlaGppgtGktalaiaiskelgedvpfvalsgsevy 89 
                 +vLl GppgtGkt la a++ e g  vpf++ sgs++ 
  MMETSP0890-20130614|6584_1 217 GVLLEGPPGTGKTLLARAVAGEAG--VPFISTSGSQFV 252
                 79********************98..*********975 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   9.7e-06    0.0078       1      76 [.     217     285 ..     217     342 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.7e-06
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEver 76 
                 +vlL GppGtgK+ la+ +a   + ++    ++++ +    +g  +i           l ++a+   ++i+++DE++ 
  MMETSP0890-20130614|6584_1 217 GVLLEGPPGTGKTLLARAVAGEAGVPFISTSGSQFVEMFVGVGASRI---------RDLFQQAKkkAPSIIFIDELDA 285
                 59***************999877777776666666554444444444.........4444444434555666666655 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.2e-06    0.0066       2      31 ..     218     247 ..     218     349 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.2e-06
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqd 31 
                 vll G+pG+GK+ la++++ + g  ++s+ 
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAGEAGVPFISTS 247
                 7899******************99888875 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.1e-06    0.0074      50     146 ..     218     312 ..     212     330 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.1e-06
  PF01695.12  50 lvllGpsGvGKthlAialgveavraglsvlfvrledLveeLkrakgdgrleralkrlakvdllilDdlgllplseeeakllfellskryerrsiilt 146
                 ++l Gp+G+GKt lA a++ ea    +s++  +  +++  + + +  + +++a k+     ++ +D+l  +  ++  a+  f   ++r  +   ilt
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAGEAGVPFISTSGSQFVEMFVGVGASRIRDLFQQAKKK--APSIIFIDELDAIGRQRSGASAGFAANDEREATLNQILT 312
                 8999***************9998777777777777777777777777777666554..456677777777766666666666666666666666655 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.5   3.6e+03      97     155 ..      66     126 ..      58     131 .. 0.56
   2 ?   14.0   0.0   4.1e-05     0.033       2      37 ..     218     254 ..     217     277 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.5
   PF13521.1  97 ekeleeaarekrydl.vfllppepeieqDgeR.redeee.aeaiderlrealeelgipviev 155
                 + el e+ ++ r ++  f+ +++  + qD +  +++++   + +++++++a ++++i++++ 
  MMETSP0890-20130614|6584_1  66 MSELFEEFEAARVKRvRFVSDHMLHA-QDSQGlWHRVSIlGRGTEDLILNAINKYNIEYMIE 126
                 55555666666666634444444444.33333244443325567788888888888888775 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.1e-05
   PF13521.1   2 ivitGgpstGKTtlleaLa.argypvvpEvarevlee 37 
                 + + G+p+tGKT l++a+a + g+p +   + +++e 
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAgEAGVPFISTSGSQFVEM 254
                 6789***************556*99998888887765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00098      0.79      30      56 ..     213     238 ..     193     257 .. 0.81
   2 ?    2.9   0.0     0.068        54     130     184 ..     263     326 ..     250     329 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00098
   PF13481.1  30 lprgsltllaGapgtGKStlalqlaaa 56 
                  p+g+ +ll G+pgtGK+ la + a+ 
  MMETSP0890-20130614|6584_1 213 RPPGG-VLLEGPPGTGKTLLARAVAGE 238
                 57888.899***********9888775 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.068
   PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg........densnsdv..gaviaalerlakrtgaavl 184
                 +++l + +++ + p+++ iD l+++ ++          n+++++  ++++ +++ +  + g+ vl
  MMETSP0890-20130614|6584_1 263 IRDLFQQAKK-KAPSIIFIDELDAIGRQrsgasagfAANDEREAtlNQILTEMDGFHGHSGVIVL 326
                 4555566666.56*********9999887778888877777777789999999999999999887 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.5e-05     0.076      25      43 ..     218     236 ..     208     244 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.5e-05
  PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                 +ll GppG+GKt+la++++
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVA 236
                 79*************9875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.09       4      84 ..     216     291 ..     213     313 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
                 --EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----.- CS
   PF07724.9   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.e 84 
                 + +ll gp g+Gkt+la+a+a    v    ++i    s++ e   +   v    +   + +++++    i+++DE+d i ++ +
  MMETSP0890-20130614|6584_1 216 GGVLLEGPPGTGKTLLARAVAGEAGV----PFISTSGSQFVE---MFVGVGASRIRDLFQQAKKK-ApsIIFIDELDAIGRQrS 291
                 668999******************98....************...44444444444444443333.346*********999643 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       7.1   5.7e+03      47      51 ..      54      58 ..      18     102 .. 0.59
   2 ?   11.9   0.0   0.00023      0.19       1      22 [.     218     239 ..     218     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 7.1
   PF13238.1 47 eskel 51
                + +el
  MMETSP0890-20130614|6584_1 54 RIEEL 58
                22222 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00023
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl 22 
                 +l+ G+pG+GKt la++ a + 
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAGEA 239
                 789*************997654 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00041      0.33       5      73 ..     218     286 ..     215     323 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00041
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkla....dpe.llelfleklkekkkylflDEiqev 73 
                 ++++Gp ++GKt l++ +a e      + +i+    ++ ++     + + + +lf + +k+  +++f+DE   +
  MMETSP0890-20130614|6584_1 218 VLLEGPPGTGKTLLARAVAGEAG----VPFISTSGSQFVEMFvgvgA-SrIRDLFQQAKKKAPSIIFIDELDAI 286
                 789***************98877....77777777666554422212.13667777766668899*****9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:01.51
# Mc/sec: 1037.89
//
Query:       MMETSP0890-20130614|6583_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   70.1   0.0    3.9e-19   68.8   0.0    1.7  1  PF00535.21 Glycosyl transferase family 2
    1.3e-07   31.5   0.0    4.2e-07   29.9   0.0    1.8  1  PF13641.1  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.032   14.9   2.2       0.13   13.0   0.3    2.7  2  PF13469.1  Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   8.5e-23   3.9e-19       1     120 [.     491     612 ..     491     645 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 8.5e-23
                 EEEEEESS-TTTHHHHHHHHHT-..S---EEEEEEE-S--HHHHHHHGGGGGE------HHHHHS-.HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHHHHHHHH.-T..T--EEEEEEE CS
  PF00535.21   1 sviiptyNeekylletlesllnq..typnfeiivvDDgStDetveileeyaksdprvrvirleknv.GkagarnaglkkatgdyilflDaDdepdpdwleklveklekdgadvvigsrvrifg 120
                 s+iip+ Ne+++++ t++++ ++   + ++eii+vD  StD+tv+i+++ ak++++ + i + k+  G ++a+  g+ +atg  ++fl aD++p+ d+   + ++l + ++++v++ r  +++
  MMETSP0890-20130614|6583_1 491 SIIIPALNEANNISTTIAAVFSRaqNPAKLEIILVDASSTDDTVKIAQDTAKKFQQNICILNVKRDaGRGKALRLGAHAATGSSLFFLHADTIPPFDYDLAIRSELSN-PNILVCAFRLGFSS 612
                 9*******************99999***************************777777777776777******************************88888888888.77677777666655 PP

>> PF13641.1  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   9.2e-11   4.2e-07       3     102 ..     490     586 ..     487     695 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 9.2e-11
   PF13641.1   3 vavvvptlneddvlarvlesil.aldyapr.levivvvdgsdaetldvaeelaaaypdvrvrvvvrprnpgptgkaralnealqaiksdlvlllDaDsvvdp 102
                 +++++p+lne+  +  ++ ++  +  + p+ le+i+v+  s+++t+++a+  a++++   + ++++ r+ g +gk  al  + +a++++ + +l+aD+++  
  MMETSP0890-20130614|6583_1 490 LSIIIPALNEANNISTTIAAVFsRAQN-PAkLEIILVDASSTDDTVKIAQDTAKKFQQN-ICILNVKRDAG-RGK--ALRLGAHAATGSSLFFLHADTIPPF 586
                 79********************54345.666**************************85.56666667667.477..6688999999999999999999855 PP

>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   2.8e-05      0.13       1     151 [.      27     135 ..      27     245 .. 0.53
   2 ?   -2.1   0.0       1.3     6e+03      44      44 ..     671     671 ..     565     725 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.8e-05
   PF13469.1   1 rpvfilGlpRSGttlLaraLlalhpaelgllapqapaladapkglaeraallpllradllsalrrwd.alprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahllfpdrfvvllRdPlavlasllrlllas 151
                 ++vf+lGlpR Gtt+L+  +                  +          +++ ++ + ll +++  + ++     ar +a + +g  +lv+e+        +l+   +l+++  + +              ++++R+Pl  l s+l+++l++
  MMETSP0890-20130614|6583_1  27 QLVFVLGLPRGGTTALE-KFV-----------------YEKIQ------FDGQINEPSLLGPPPKGKiSRIERTFARVLAHVQKGGIFLVKEVTN-----KVLPEMIPLWYRVVYSW--------------IIVVRNPLLQLESRLKSMLDR 135
                 589**************.555.................22222......3333333333322222221222111111111111111222221111.....11111122333333333..............777788877777755555433 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
   PF13469.1  44 g 44 
                  
  MMETSP0890-20130614|6583_1 671 A 671
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:01.41
# Mc/sec: 1250.86
//
Query:       MMETSP0890-20130614|6588_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-15   54.2   5.2    0.00042   19.7   0.1    4.4  5  PF12799.2  Leucine Rich repeats (2 copies)
    5.5e-13   48.3  21.5    1.7e-06   27.5   2.7    3.5  3  PF13855.1  Leucine rich repeat
      3e-06   26.3  10.1       0.73    9.9   0.0    6.2  6  PF00560.28 Leucine Rich Repeat
     0.0013   18.4   5.3        7.6    6.8   0.1    5.5  6  PF13516.1  Leucine Rich repeat
     0.0028   17.4  10.1         22    5.7   0.0    6.5  6  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.5e-07   0.00042       3      39 ..      81     118 ..      78     126 .. 0.88
   2 !    7.2   0.0    0.0013       3.5      24      39 ..     169     184 ..     159     188 .. 0.80
   3 !   17.3   0.1   8.7e-07    0.0024       1      40 [.     169     208 ..     169     213 .. 0.88
   4 !   18.6   0.9   3.5e-07   0.00095       2      43 ..     193     236 ..     192     237 .. 0.89
   5 !   15.1   0.1   4.3e-06     0.012       3      37 ..     217     255 ..     215     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.5e-07
   PF12799.2   3 LevLdLsnNnIkdlppe.lanLpnLktLnLsnNpisdl 39 
                 L  L+L++N + +l+++ la L  L+ L+++ N ++ l
  MMETSP0890-20130614|6588_1  81 LIALSLRKNCLRSLEAHtLAPLAALEFLDVAENELERL 118
                 6679***********955***************99865 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0013
   PF12799.2  24 pnLktLnLsnNpisdl 39 
                 p L++L+ s+N+is +
  MMETSP0890-20130614|6588_1 169 PRLRSLDASRNRISRC 184
                 6899999999999865 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 8.7e-07
   PF12799.2   1 tnLevLdLsnNnIk..dlppelanLpnLktLnLsnNpisdls 40 
                 + L++Ld s+N+I+  +++   ++ p L+ +nLs+N+i  +s
  MMETSP0890-20130614|6588_1 169 PRLRSLDASRNRISrcSIGS--GGAPCLERINLSHNKIRFIS 208
                 68************777999..****************7555 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 3.5e-07
   PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpi..sdlsaLa 43 
                  Le ++Ls+N+I  ++ +l++ p L +L+L  N +  ++ls+++
  MMETSP0890-20130614|6588_1 193 CLERINLSHNKIRFISQDLKGAPHLLHLDLRFNLLpqQNLSQFK 236
                 69*******************************99444788775 PP

  == domain 5    score: 15.1 bits;  conditional E-value: 4.3e-06
   PF12799.2   3 LevLdLsnN.....nIkdlppelanLpnLktLnLsnNpis 37 
                 L +LdL+ N     n+++ ++ +a L++L+ L L++N i 
  MMETSP0890-20130614|6588_1 217 LLHLDLRFNllpqqNLSQFKH-FAHLRKLRALALNGNVIA 255
                 668******888888899999.***************997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   3.7e-07     0.001      23      61 .]      77     115 ..      56     115 .. 0.90
   2 !   27.4   1.2   6.7e-10   1.8e-06       1      61 []     169     227 ..     169     227 .. 0.93
   3 !   27.5   2.7   6.1e-10   1.7e-06       3      59 ..     194     252 ..     192     254 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.7e-07
   PF13855.1  23 glsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 +l +L  L+L +n+l s+++++++ L +L+ L++  N+l
  MMETSP0890-20130614|6588_1  77 QLRSLIALSLRKNCLRSLEAHTLAPLAALEFLDVAENEL 115
                 599*******************************99987 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 6.7e-10
   PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                 p+L++Ld s+Nr+++ + g+ +g + L+ ++Ls+n++  is   +kg p+L +L+L+ N l
  MMETSP0890-20130614|6588_1 169 PRLRSLDASRNRISRCSIGS-GGAPCLERINLSHNKIRFISQ-DLKGAPHLLHLDLRFNLL 227
                 79************999988.77899**************97.67*************976 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 6.1e-10
   PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl..ksisp.eafkgLpsLreLnLsgN 59 
                 L++++Ls+N+++ i+++ +kg ++L +LdL  n l  +++s  + f++L++Lr L L gN
  MMETSP0890-20130614|6588_1 194 LERINLSHNKIRFISQD-LKGAPHLLHLDLRFNLLpqQNLSQfKHFAHLRKLRALALNGN 252
                 99************986.599**********99997667777667999999999999999 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.043   1.2e+02       1      18 [.      80      97 ..      80     102 .. 0.80
   2 ?    2.7   0.0     0.064   1.7e+02       2      17 ..     105     120 ..     104     124 .. 0.86
   3 !    6.3   0.0    0.0042        12       1      13 [.     170     182 ..     170     189 .. 0.84
   4 !    9.9   0.0   0.00027      0.73       2      20 ..     194     212 ..     193     214 .. 0.88
   5 ?    5.0   0.4     0.011        31       1      20 [.     216     236 ..     216     241 .. 0.75
   6 ?   -1.4   0.0       1.4   3.7e+03       1      12 [.     243     254 ..     243     265 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.043
                TESEEEETSSBCBCHHHH CS
  PF00560.28  1 nLeeLdLsgNnltslpps 18
                +L  L+L+ N+l sl   
  MMETSP0890-20130614|6588_1 80 SLIALSLRKNCLRSLEAH 97
                5888********998765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.064
                 ESEEEETSSBCBCHHH CS
  PF00560.28   2 LeeLdLsgNnltslpp 17 
                 Le Ld+  N l+ l p
  MMETSP0890-20130614|6588_1 105 LEFLDVAENELERLCP 120
                 99*********98776 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0042
                 TESEEEETSSBCB CS
  PF00560.28   1 nLeeLdLsgNnlt 13 
                 +L++Ld s+N+++
  MMETSP0890-20130614|6588_1 170 RLRSLDASRNRIS 182
                 59*********98 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.00027
                 ESEEEETSSBCBCHHHHHH CS
  PF00560.28   2 LeeLdLsgNnltslppsls 20 
                 Le+++Ls+N++  ++ +l+
  MMETSP0890-20130614|6588_1 194 LERINLSHNKIRFISQDLK 212
                 9***********9998876 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.011
                 TESEEEETSSBCBC..HHHHHH CS
  PF00560.28   1 nLeeLdLsgNnlts..lppsls 20 
                 +L +LdL++N l +  l+  ++
  MMETSP0890-20130614|6588_1 216 HLLHLDLRFNLLPQqnLSQ-FK 236
                 689*******998546555.55 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 1.4
                 TESEEEETSSBC CS
  PF00560.28   1 nLeeLdLsgNnl 12 
                 +L+ L L+gN +
  MMETSP0890-20130614|6588_1 243 KLRALALNGNVI 254
                 689999999966 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.54   1.5e+03       2      22 ..      79      99 ..      78     100 .. 0.74
   2 ?   -1.1   0.0      0.96   2.6e+03       4      14 ..     105     115 ..     102     124 .. 0.78
   3 !    6.7   0.0    0.0029         8       2      19 ..     169     191 ..     165     194 .. 0.70
   4 !    6.8   0.1    0.0028       7.6       2      14 ..     192     204 ..     191     212 .. 0.88
   5 ?    2.5   0.0     0.069   1.9e+02       2      14 ..     215     227 ..     214     239 .. 0.80
   6 ?   -3.0   0.0         4   1.1e+04       2      14 ..     242     254 ..     241     256 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.54
   PF13516.1  2 knLtsLdLsnNqigdeGlsaL 22
                 +L  L L +N + +  +  L
  MMETSP0890-20130614|6588_1 79 RSLIALSLRKNCLRSLEAHTL 99
                678889999999887766655 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.96
   PF13516.1   4 LtsLdLsnNqi 14 
                 L+ Ld+  N +
  MMETSP0890-20130614|6588_1 105 LEFLDVAENEL 115
                 88999988876 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0029
   PF13516.1   2 knLtsLd.....LsnNqigdeGl 19 
                 + L+sLd     +s++ ig+ G+
  MMETSP0890-20130614|6588_1 169 PRLRSLDasrnrISRCSIGSGGA 191
                 6799**84444566777777776 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0028
   PF13516.1   2 knLtsLdLsnNqi 14 
                 ++L+ ++Ls+N+i
  MMETSP0890-20130614|6588_1 192 PCLERINLSHNKI 204
                 78**********8 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.069
   PF13516.1   2 knLtsLdLsnNqi 14 
                 ++L +LdL +N +
  MMETSP0890-20130614|6588_1 215 PHLLHLDLRFNLL 227
                 7899*******87 PP

  == domain 6    score: -3.0 bits;  conditional E-value: 4
   PF13516.1   2 knLtsLdLsnNqi 14 
                  +L+ L L++N i
  MMETSP0890-20130614|6588_1 242 RKLRALALNGNVI 254
                 5677787888865 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.25   6.9e+02       2      16 ..      80      94 ..      79      95 .. 0.85
   2 ?    5.0   0.0     0.014        38       3      16 ..     105     118 ..     103     120 .. 0.89
   3 !    5.7   0.0     0.008        22       1      14 [.     169     182 ..     169     187 .. 0.87
   4 ?    3.5   0.0     0.042   1.2e+02       1      16 [.     192     207 ..     192     209 .. 0.85
   5 ?    0.5   0.1       0.4   1.1e+03       1      11 [.     215     225 ..     215     236 .. 0.78
   6 ?    0.8   0.0      0.34   9.2e+02       2      11 ..     243     252 ..     240     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.25
   PF13504.1  2 nLkeLdLsgnrLtsL 16
                +L  L+L+ n L sL
  MMETSP0890-20130614|6588_1 80 SLIALSLRKNCLRSL 94
                67789*****99987 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.014
   PF13504.1   3 LkeLdLsgnrLtsL 16 
                 L++Ld++ n+L+ L
  MMETSP0890-20130614|6588_1 105 LEFLDVAENELERL 118
                 9*********9876 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.008
   PF13504.1   1 pnLkeLdLsgnrLt 14 
                 p+L+ Ld s+nr+ 
  MMETSP0890-20130614|6588_1 169 PRLRSLDASRNRIS 182
                 79*********985 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.042
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 p+L++ +Ls+n++  +
  MMETSP0890-20130614|6588_1 192 PCLERINLSHNKIRFI 207
                 68999******98755 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.4
   PF13504.1   1 pnLkeLdLsgn 11 
                 p+L  LdL+ n
  MMETSP0890-20130614|6588_1 215 PHLLHLDLRFN 225
                 68999***988 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.34
   PF13504.1   2 nLkeLdLsgn 11 
                 +L+ L L+gn
  MMETSP0890-20130614|6588_1 243 KLRALALNGN 252
                 6788889988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.84
# Mc/sec: 821.61
//
Query:       MMETSP0890-20130614|6589_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.6   0.3      0.019   14.3   0.2    1.3  1  PF03066.10 Nucleoplasmin
      0.025   14.7   0.0      0.041   14.0   0.0    1.3  1  PF12796.2  Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   2.7e-06     0.019     120     137 ..     211     228 ..     134     230 .] 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.7e-06
                 --XXXXXXXXXXXXXXXX CS
  PF03066.10 120 deedeeeeddeedddeee 137
                 ++ed+e++dd++dd+eee
  MMETSP0890-20130614|6589_1 211 EDEDNEDDDDDDDDQEEE 228
                 223333333333333332 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     6e-06     0.041      28      78 ..      55     118 ..      16     128 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6e-06
   PF12796.2  28 t.........pLh.lAaeagnleivklLleagadvnakd...kegntpLhlAvrnghlelvklL 78 
                           pL  +A++ ++  +++lLl++ga   a +   + g+t+  lA +++   +v++L
  MMETSP0890-20130614|6589_1  55 LastrdqearPLIwYAVDTNDPIAAELLLSHGAASSAFSrikNGGKTAFELAYSKRYERVVRVL 118
                 03344455666654899999999*********998776678899**********9999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.69
# Mc/sec: 798.79
//
Query:       MMETSP0890-20130614|6579_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-08   31.7   7.7    1.7e-07   30.8   5.3    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.7e-06   27.4   6.1    3.6e-06   26.4   4.2    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    4.8e-06   26.0   8.0    9.8e-06   25.1   5.6    1.6  1  PF13639.1  Ring finger domain
      4e-05   23.0   7.1    9.7e-05   21.8   4.9    1.7  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.021   14.2   1.0      0.042   13.3   0.7    1.4  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   5.3   6.1e-11   1.7e-07       3      42 ..     169     217 ..     167     223 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6.1e-11
   PF13923.1   3 fsCpiCleelenpviltpCgHlyCkkCieqwleks.........kkkCP 42 
                 ++C+iC+ +++n + + pCgH +C  C + +l+++           +CP
  MMETSP0890-20130614|6579_1 169 KECQICFGDASNNALAAPCGHFFCAHCYTAYLSQKvqdegqacvTTQCP 217
                 69**********999*******************666554444433577 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   4.2   1.3e-09   3.6e-06       1      33 [.     171     211 ..     171     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.3e-09
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCS........T CS
  PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilks........r 33 
                 C+iC+  a+++  + +C+H fC +C++ +l++        +
  MMETSP0890-20130614|6579_1 171 CQICFGDASNNALAAPCGHFFCAHCYTAYLSQkvqdegqaC 211
                 ******************************98777444333 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   5.6   3.6e-09   9.8e-06       2      41 ..     170     217 ..     169     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.6e-09
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssn..........sCP 41 
                 eC iC+ +   ++++   pCgH+f+++C  ++l+++           +CP
  MMETSP0890-20130614|6579_1 170 ECQICFGDA--SNNALAAPCGHFFCAHCYTAYLSQKVqdegqacvttQCP 217
                 8*******9..69********************88633456667777887 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   4.9   3.6e-08   9.7e-05       3      41 ..     169     217 ..     167     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.6e-08
   PF13920.1   3 ktCvvCler.eadvlllpCgHlclCeeCaerllk..........rkkkCp 41 
                 k+C +C+    +++l  pCgH  +C+ C +++l+           + +Cp
  MMETSP0890-20130614|6579_1 169 KECQICFGDaSNNALAAPCGHF-FCAHCYTAYLSqkvqdegqacVTTQCP 217
                 78*****7527889********.*********998888866666555555 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.7   1.5e-05     0.042      13      52 ..     171     208 ..     161     218 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
                 -TTT-S-SS....EEEES---EEEHHHHHHHHHHHHTTT- CS
   PF13445.1  13 CpiskeqsteqnpPvvLpCGhvisrealeklakggrsnkg 52 
                 C i+  +++ +n+    pCGh ++ ++ + +++++ ++ g
  MMETSP0890-20130614|6579_1 171 CQIC--FGDASNNALAAPCGHFFCAHCYTAYLSQKVQDEG 208
                 5555..467789***************9998885554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       759  (0.0555149); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 885.61
//
Query:       MMETSP0890-20130614|6590_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-21   77.2   0.0    1.6e-21   76.8   0.0    1.1  1  PF00106.20 short chain dehydrogenase
    1.7e-20   73.7   0.1    2.1e-20   73.4   0.1    1.0  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    1.3e-09   37.8   0.0    1.9e-09   37.2   0.0    1.3  1  PF08659.5  KR domain
  ------ inclusion threshold ------
       0.19   11.5   1.5        2.6    7.9   0.0    2.4  2  PF07203.6  Protein of unknown function (DUF1412)


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   4.6e-25   1.6e-21       3     162 ..       1     169 [.       1     173 [. 0.90

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 4.6e-25
                 EEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHH.H---EEEEEE--TTSHHHHHHHHHHHH..HH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH.......HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHH CS
  PF00106.20   3 vliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaele.algaevtvvacDvadrdalaallaeir..kalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltld.......adlgafvlfSSvagvlgspgqaaYaaakaaldalaesr 162
                 +++TGG++glG  lA++L ++ga+ ++l++ r+d+p  ++   e++ ++g ++++++ ++a++d +++++ ++r   a ++ldg+ + ag +   +++e+++ + +++++a++ ++ + l + +         +++g++v++SS a++ g+  + +Y+ akaal   +++ 
  MMETSP0890-20130614|6590_1   1 IIVTGGSKGLGWSLAQELSKAGASFILLIGGRSDSPVDGKE--EWTtKEGCQMQYTKSNLASKDGVQEIMIKMRstFANKRLDGLANVAGKSFpRATIEQIDFDLFDQMIALNCRAPIFLMKEAISiikqqrsNKGGSIVNISSDAAFGGATDMFVYSLAKAALVNATKAA 169
                 59*****************************9666666665..5554899**********************99666789**********9777***********************999999999998875555*****************************9988875 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.1   6.3e-24   2.1e-20       5     236 ..       7     243 ..       5     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 6.3e-24
                 ------HHHHHHHH---EEEE..---HH--------.--------------TT-SGGHHHHHHHHHHH.-.--BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHH...GG..GB-----EEEEEE-------------------THHHHHHHHHH----S---EEEEEE--------------..------------------CCC---HHHHHCSGGGTT----EE CS
   PF13561.1   5 dnsigwaiakalaeaGaevil..ttwvpaklkkkvq.elakelpadvvplDvtseedvselaekvkedlg.gkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaa...lpknlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggi..ekmieyseenapLgkelsaeevaeaaafLlsdlasaiTgetl 236
                 ++++gw+ a+ l +aGa++il  ++++++++++k + + ++ ++++    +++s++ v+e++ k+++++  +++D+l + ++ s + r    + +++ + +++ +  ++   + l+k a    +++  n+ggSiv +s +a+      +  +s aKAaL   t+  A + +  ++iR+nt+++G ++t +  a+++   ++ +  ++++ p+g+ l++ ++   +  Lls+++++iTg+++
  MMETSP0890-20130614|6590_1   7 SKGLGWSLAQELSKAGASFILliGGRSDSPVDGKEEwTTKEGCQMQYTKSNLASKDGVQEIMIKMRSTFAnKRLDGLANVAGKSFP-R--ATIEQIDFDLFDQMIALNCRAPIFLMKEAisiIKQQRSNKGGSIVNISSDAAFGGATDMFVYSLAKAALVNATKAAALNCQS-YQIRINTVAMGQTATESELAFQSKsdQDWLSKADAQHPMGRLLRPIDIVASIGHLLSPASRMITGSVI 243
                 589***************986336777777765555344445556679********************98899*********9998.3..44556788888888888888877777765111456888999****************************************9.****************9999988744669************99***********************98 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   5.7e-13   1.9e-09       4     156 ..       2     162 ..       1     186 [. 0.81

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.7e-13
                 EE----SHHHHHHHHHHHH-----EEEEE--..---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS...---EEEE------.---TTT--HHHHHHHHHHHHHHHHHHHHHHCC.......----EEEEEEEGGGT-------------HHH CS
   PF08659.5   4 LvtGGlgglGlelarwLaergarhlvllsrs.aapdeeaeallaelealgaevtvvaaDvadrdavealleeveaee..pplrGvvhaAgvlr.dallaemtaedlaavlapKvtGawnLhellad.......epldffvlfSSiagvlgsagqanyaaanafl 156
                 +vtGG  glG +la++L + ga+ ++l++ +  +p +    + +  ++ g++ ++ + ++a++d v++++ +++ ++  ++l+G  ++Ag     a++++ + + +++++a  +++   L +   +       ++   +v +SS a++ g +    y+ a+a l
  MMETSP0890-20130614|6590_1   2 IVTGGSKGLGWSLAQELSKAGASFILLIGGRsDSPVDG---KEEWTTKEGCQMQYTKSNLASKDGVQEIMIKMRSTFanKRLDGLANVAGKSFpRATIEQIDFDLFDQMIALNCRAPIFLMKEAISiikqqrsNKGGSIVNISSDAAFGGATDMFVYSLAKAAL 162
                 7************************9998871333333...34555678**************************99999*********97552889*************999998877765443335556657777888888888888888888888888765 PP

>> PF07203.6  Protein of unknown function (DUF1412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3     0.049   1.7e+02      27      37 ..       3      13 ..       2      16 .. 0.87
   2 ?    7.9   0.0   0.00076       2.6       4      34 ..     127     152 ..     124     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.049
   PF07203.6 27 laGGptslGWa 37
                ++GG+  lGW 
  MMETSP0890-20130614|6590_1  3 VTGGSKGLGWS 13
                68********5 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00076
   PF07203.6   4 RdrRaiedyfnsngVvnNmvsDnlaGGptsl 34 
                 +++R      n++g ++N+ sD  +GG+t++
  MMETSP0890-20130614|6590_1 127 KQQR-----SNKGGSIVNISSDAAFGGATDM 152
                 5555.....57899**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1193.74
//
Query:       MMETSP0890-20130614|6592_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.55
# Mc/sec: 440.06
//
Query:       MMETSP0890-20130614|6587_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-19   67.8   0.0    1.6e-18   66.6   0.0    1.6  1  PF00180.15 Isocitrate/isopropylmalate dehydrogenase
    2.3e-07   29.5   0.3    6.2e-07   28.1   0.2    1.8  1  PF00036.27 EF hand
    5.9e-06   25.6   0.2    1.5e-05   24.3   0.1    1.7  1  PF13833.1  EF-hand domain pair
    5.3e-05   23.1   0.0    0.00015   21.6   0.0    1.7  1  PF13499.1  EF-hand domain pair
    8.4e-05   21.6   0.1    0.00022   20.2   0.1    1.7  1  PF13202.1  EF hand
    0.00023   20.6   0.0    0.00097   18.7   0.0    2.1  1  PF13405.1  EF-hand domain


Domain annotation for each model (and alignments):
>> PF00180.15  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   7.1e-22   1.6e-18      34     348 .]      22     387 ..       5     387 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 7.1e-22
                 EEEE------HHHH----S-HHHHHHHHTSSEEE-------T-GGGSTT-.-----TTT--.--EEEEEEE--.CCCGGGSSB-HHHHTT-EEEEEEE----------EEE........................E----E.EEEEEEEEHHHHHHHHHHHHHHHHTT.TSEEEEEE-TTT-HHHHHHHHHHHHHHT.............TSTTSEEEEEEHHHHHHHHHH-----SEEEE-S----HHHHHHCTT-------EEEEE-S....S----EEE-----GGG-----......------HHHHHHHHHHH---HHHH..........HHHHHHHHHHHH---B----------B--HHHHHHHH CS
  PF00180.15  34 efeevdvGgaaidetgeplpeetleaikeadavllgavgtpkgkevrpee.gLlalrkeld.lfanlrpvkvf.ekllvksplkrevvegvdlvivReltggiYfgeekeikg......................sgfteevavdtklyseeeieriaraAfelAlkrgrkkvtlvdKanvlksselwrkiveevake............eypdielehqlvDsaamqlvkspkqfdVivteNlfGDilSDeaaalvGslGllpSaslga....kkvalfEpvHGsapdiagkdk......aNpiavilSaammLrhslgleeeA..........dkiekavekvleegivTkDlageaakevstsefgeav 348
                 ++e +d++ aa+d+t++++  +++ea  +  a+ + ++ tp    +++e+ gL++   +++   +   +   +   +   + ++  +  ++ ++  R+++gg Y +  +ei +                      +  +++ +  +     +++e +a   f+  l++ + + ++v+K++v k +e + +i ++v+++            +  + el+h + D+a+mq+++  +    + ++N++GD+l De+a++  s G+++S  +g+      +  fE+ HG++ d+   +        Np+++  +    L+h++ l+ +           ++++ka++++++ g  T D+ag++ + ++t+ef+ +v
  MMETSP0890-20130614|6587_1  22 SWEFYDLSCAARDATDDQVLIDAVEAGSRIGAIFKEPTVTPS--ALQVESmGLKKALPSPNgAMRRGWNGVTIsRDTIHIEGIE--LGFKKPVLFERHAVGGEYGAGWREIPKgrlittffpddeesepqivdarRLCDSRNVAVVYHNPLDNVETLADHFFARCLEE-KVTPYVVTKKTVFKWQEPFWDIHKRVFDAkyktkfiqagllDDTGNELQHLISDAATMQIIRWTRGGFGMSAHNYDGDMLTDEVAQVHRSPGFITSNLVGKtkdgTLIKEFEASHGTVADLWHAHLrgeptsFNPLGMAEALMGALAHAAALSGNKnlttkynhfvTALRKALHNTFRYGQGTWDMAGKE-TGLTTEEFVSKV 387
                 689999999********************************9..4555553455444444432222222222212222222222..2223578888********87777776669**************999986333444444455556788999****9**99999.99999************8888888888888888***99999667889****************9555566789****************************987666788**********9998888999999****999999999998888766678999999999999999999999*********99.********9876 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   2.7e-10   6.2e-07       3      28 ..     431     456 ..     429     457 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.7e-10
                 HHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                   +F+efD+Dg+G Is+ Ef e++ k
  MMETSP0890-20130614|6587_1 431 AAMFNEFDVDGNGSISLTEFEEMIIK 456
                 68*********************977 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   6.8e-09   1.5e-05      20      47 ..     424     450 ..     415     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 6.8e-09
   PF13833.1  20 kglseeevdilfrefDtdgdGkisfeEF 47 
                 k +  e+v ++f+efD dg+G is+ EF
  MMETSP0890-20130614|6587_1 424 K-IDLEKVAAMFNEFDVDGNGSISLTEF 450
                 3.88999********************9 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.8e-08   0.00015       4      30 ..     432     458 ..     416     477 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.8e-08
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlg 30 
                  +F+++D+dg+g+++ +e+++++ +lg
  MMETSP0890-20130614|6587_1 432 AMFNEFDVDGNGSISLTEFEEMIIKLG 458
                 246666666666666666666666555 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   9.8e-08   0.00022       3      24 ..     432     453 ..     430     454 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 9.8e-08
                 HHHHHH--S----B-HHHHHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreELkrl 24 
                 ++F++fD++g G Is  E++++
  MMETSP0890-20130614|6587_1 432 AMFNEFDVDGNGSISLTEFEEM 453
                 68*****************986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.2e-07   0.00097       4      27 ..     432     455 ..     429     459 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.2e-07
                 ---GCC-------B---HHHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                 + F+ fD dg+G i++ E+  ++ 
  MMETSP0890-20130614|6587_1 432 AMFNEFDVDGNGSISLTEFEEMII 455
                 68*****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.80
# Mc/sec: 1443.81
//
Query:       MMETSP0890-20130614|6598_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   27.4   0.0    0.00016   21.0   0.0    2.5  2  PF04064.8 Domain of unknown function (DUF384)
    4.3e-06   26.2   0.1    1.1e-05   24.8   0.0    2.0  1  PF04063.9 Domain of unknown function (DUF383)


Domain annotation for each model (and alignments):
>> PF04064.8  Domain of unknown function (DUF384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-08   0.00016       1      40 [.     232     278 ..     232     284 .. 0.81
   2 !    3.7   0.0    0.0059        41      33      54 ..     303     324 ..     295     327 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.3e-08
   PF04064.8   1 slllLcttkaGRevLRskgvYpIlRelHky......e.edekvleac 40 
                 +l+ +c+t++ R++L++  vYp++R ++        e +d+ +l+a+
  MMETSP0890-20130614|6598_1 232 ALFCFCATRRIRKALKNACVYPVIRDCDYAfagvlhEdKDDSILDAS 278
                 6899**********************988766666533557777775 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0059
   PF04064.8  33 dekvleacervVqlLirdEeea 54 
                 +  + + c ++ ++L rd+ee+
  MMETSP0890-20130614|6598_1 303 NTRISRVCADLADMLLRDDEEQ 324
                 4678999***********9996 PP

>> PF04063.9  Domain of unknown function (DUF383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.7e-09   1.1e-05      91     146 ..     130     181 ..       5     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.7e-09
   PF04063.9  91 gRellvtpqetegvvpvskllvftehestirRgGvastikNvlfdksahklllade 146
                  R  l+ +++      ++kll+  +  st rR+Gva ++k ++ d+++h +l+++ 
  MMETSP0890-20130614|6598_1 130 FRSALLRRSTAI----IKKLLPHLRCASTERRRGVAAILKHCALDRDEHFYLFDEL 181
                 566666665555....***********************************99853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:01.04
# Mc/sec: 921.68
//
Query:       MMETSP0890-20130614|6600_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-21   75.1   0.0    4.1e-21   74.1   0.0    1.5  1  PF01849.13 NAC domain


Domain annotation for each model (and alignments):
>> PF01849.13  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0     3e-25   4.1e-21       1      57 [.      45     101 ..      45     102 .. 0.98

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 3e-25
                 XXXXXXXXXXXX-EEE----EEEEE-----EEEEEEEEEEEETTTTEEEEE-EEEEE CS
  PF01849.13   1 ekKlqkalkklglkeiegveeVtirkkdgkvlvfnnPeVqkspgsntyvvfGeakek 57 
                 +kKl ++lkklg+++i+ +eeV+++++dgkv++f+ P+Vq+s ++ntyv++G  ++k
  MMETSP0890-20130614|6600_1  45 DKKLGSTLKKLGVTNIPAIEEVNLFTDDGKVIHFTTPKVQASIAANTYVISGPNETK 101
                 79***************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 573.04
//
Query:       MMETSP0890-20130614|6601_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-25   87.9   0.0    9.5e-25   86.7   0.0    1.6  1  PF03109.11 ABC1 family
     0.0021   17.7   4.1     0.0058   16.2   0.3    3.1  4  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   1.4e-28   9.5e-25       8     119 .]     170     291 ..     165     291 .. 0.89

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 1.4e-28
  PF03109.11   8 eevFaefdeePlAaASiaQVHrAvlks....geeVavKvqrpgvkkriksDlkllkllakllkkiskea...rldleelvdelskelaeeldfkrEAknaekfrenfakl...kevkvPkvy 119
                 +++F+ ++eeP+AaASi+QV+rA+lk+    g  Va+Kvqrp+ ++ i++Dl +l++ a+ ++ + + +    ldl ++++++ + +++e+d+  EA+na++f   +a++     vk+P++y
  MMETSP0890-20130614|6601_1 170 SSIFELLEEEPVAAASIGQVYRARLKKgddqGAIVALKVQRPKCEEIITLDLFILRWWARRITDFLQIFfgrDLDLVSVIQDFGEIIFREIDYVAEAENARQFSLLYADFerqGLVKIPRIY 291
                 789************************9888999************************9988866554445599*****************************9988888554678888886 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         1   7.1e+03     120     136 ..     127     143 ..      97     160 .. 0.56
   2 ?    0.6   0.0     0.052   3.5e+02      32      84 ..     264     312 ..     245     337 .. 0.73
   3 !   16.2   0.3   8.5e-07    0.0058     164     225 ..     342     404 ..     309     411 .. 0.77
   4 ?   -1.4   0.0      0.21   1.4e+03      97     161 ..     462     527 ..     451     543 .. 0.56

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1
                 BCTHHHHHHHHHHHHHH CS
  PF01636.18 120 apyltllrllesataal 136
                 +p+l +  +l++ ++ +
  MMETSP0890-20130614|6601_1 127 RPDLLPSEYLNELQKLQ 143
                 34455555555553322 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.052
                 CHHHHHHHHHHHHHHHCCSSS.B--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
  PF01636.18  32 raaeelrrevallrlLakagi.pvPevlagdtdddvlgllfalleyvpgevler 84 
                 + ae++r++  l++ + ++g+ ++P+++      ++    +  +e+++g  l +
  MMETSP0890-20130614|6601_1 264 AEAENARQFSLLYADFERQGLvKIPRIYE-----EFTTNEVLTMEWIEGSRLVD 312
                 5567777777888999999999*******.....66666777789999887766 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 8.5e-07
                 S--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-TCHHHHCCC..TCHTCHHHHHHHHHHCH CS
  PF01636.18 164 eppvllHgDlhpgNllvdpddgrvgviDfedaglgpplyDlasll..rrwreeldpellaallr 225
                 ++ ++ H D+h gNll + ++gr+  +Df+++++ + ++ la++    +++++ +++l++ ++r
  MMETSP0890-20130614|6601_1 342 LDLGFFHADPHGGNLLAT-QEGRLVYLDFGMMSYLDEAQRLAIIEavVHLVNRDFEALADLYVR 404
                 3689**************.5566659********999999988543246777777777777776 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHS-.-TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH CS
  PF01636.18  97 alaellaalhqad.paadpladflapyltllrllesataalvasellelleeleervlaalaallp 161
                 a+++ l+ l  ++ + +  ++  ++ y++ + +l     + ++s+l +ll++ +   +a+++all 
  MMETSP0890-20130614|6601_1 462 AIIRCLGVLEGVAiQVDPDFRIVSDAYPYIASRLLTDDSPELKSALRRLLFKDDLPQWARFEALLE 527
                 667777777777633333344444555555555555544444444444333333334555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:01.52
# Mc/sec: 1116.20
//
Query:       MMETSP0890-20130614|6602_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-32  108.4   5.4    1.4e-15   56.5   0.4    2.3  2  PF00013.24 KH domain
    2.3e-25   87.6   8.4    3.7e-13   48.6   0.3    2.6  2  PF13014.1  KH domain
    1.1e-08   34.3   1.3    0.00097   18.5   0.1    2.4  2  PF07650.12 KH domain
    1.5e-06   27.6   0.0      0.047   13.1   0.0    2.5  2  PF13083.1  KH domain


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.4   4.1e-19   1.4e-15       2      55 ..     150     208 ..     149     211 .. 0.88
   2 !   54.1   0.3   2.2e-18   7.7e-15       3      57 ..     231     290 ..     229     291 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 4.1e-19
                 CEEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S......E.EEEEEESHHHHHHHH CS
  PF00013.24   2 arvkvpnskigriIGkgGsnIkeIeeetgakIdvpkd......rdtvtisGdpesvekAk 55 
                 ++v++p+s++gr+IGk+G++Ike+++++ga+I+++++      r +v+i+G++++ve   
  MMETSP0890-20130614|6602_1 150 ETVSCPQSLVGRLIGKQGETIKELQRRCGARIQIDQNfpdgeaR-VVMIQGETQAVEIGV 208
                 689*******************************6668776445.***********9765 PP

  == domain 2    score: 54.1 bits;  conditional E-value: 2.2e-18
                 EEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S...E...EEEEEESHHHHHHHHHH CS
  PF00013.24   3 rvkvpnskigriIGkgGsnIkeIeeetgakIdvpkd...r..dtvtisGdpesvekAkkl 57 
                 ++++p s++gr+IGkgG++I+e+++++ga+I++++    +  ++++++G  ++v++A++l
  MMETSP0890-20130614|6602_1 231 TFECPKSLVGRVIGKGGETINELQRRSGARIQIEQRvpeGapCIIEVQGHDNAVAEAIRL 290
                 789******************************5545544899**************875 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.3   1.1e-16   3.7e-13       1      43 []     158     199 ..     158     199 .. 0.98
   2 !   42.3   1.5   1.1e-14   3.7e-11       1      43 []     238     279 ..     238     279 .. 0.95

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.1e-16
   PF13014.1   1 lvgliIGkgGetIkeIreetGakIrfpkeaspgsnereitIrG 43 
                 lvg++IGk+GetIke+++++Ga+I++++ ++p+ + r++ I+G
  MMETSP0890-20130614|6602_1 158 LVGRLIGKQGETIKELQRRCGARIQIDQ-NFPDGEARVVMIQG 199
                 69**************************.************99 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 1.1e-14
   PF13014.1   1 lvgliIGkgGetIkeIreetGakIrfpkeaspgsnereitIrG 43 
                 lvg++IGkgGetI+e+++++Ga+I++++   p+  + +i+++G
  MMETSP0890-20130614|6602_1 238 LVGRVIGKGGETINELQRRSGARIQIEQ-RVPEGAPCIIEVQG 279
                 69**************************.99999999**9998 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   5.7e-06     0.019      36      59 ..     159     182 ..     151     208 .. 0.89
   2 !   18.5   0.1   2.9e-07   0.00097      34      62 ..     237     264 ..     228     278 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.7e-06
                 CCCC------HHHHHHHHHHHHCH CS
  PF07650.12  36 pgivIGkgGsnikklgkelrkrie 59 
                  g++IGk+G++ik+l+ + + ri+
  MMETSP0890-20130614|6602_1 159 VGRLIGKQGETIKELQRRCGARIQ 182
                 799***************999996 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.9e-07
                 SCCCCC------HHHHHHHHHHHHCHHC- CS
  PF07650.12  34 sqpgivIGkgGsnikklgkelrkriekle 62 
                 s  g+vIGkgG++i++l+ + + ri+ +e
  MMETSP0890-20130614|6602_1 237 SLVGRVIGKGGETINELQRRSGARIQ-IE 264
                 668*********************96.55 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.4e-05     0.047      34      55 ..     153     174 ..     135     175 .. 0.82
   2 !   11.7   0.0     4e-05      0.14      37      55 ..     236     254 ..     227     255 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
   PF13083.1  34 nvdgedlGrlIGkrGktldALq 55 
                 ++ ++ +GrlIGk+G+t++ Lq
  MMETSP0890-20130614|6602_1 153 SCPQSLVGRLIGKQGETIKELQ 174
                 5566679***********9777 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 4e-05
   PF13083.1  37 gedlGrlIGkrGktldALq 55 
                 ++ +Gr+IGk G+t++ Lq
  MMETSP0890-20130614|6602_1 236 KSLVGRVIGKGGETINELQ 254
                 5668***********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.92u 0.42s 00:00:01.34 Elapsed: 00:00:00.68
# Mc/sec: 2012.24
//
Query:       MMETSP0890-20130614|6606_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-15   54.9  12.1      4e-10   38.6   3.2    2.4  2  PF00132.19 Bacterial transferase hexapeptide (six repeats)
      7e-07   29.3   0.1    1.1e-06   28.6   0.1    1.3  1  PF06426.9  Serine acetyltransferase, N-terminal


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.6   2.3e-08   0.00016       2      23 ..      80     101 ..      79     102 .. 0.89
   2 !   38.6   3.2   5.9e-14     4e-10       1      36 []     111     146 ..     111     146 .. 0.96

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.3e-08
                 EEE-TTEEE-TTEEEESSEBE- CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIG 23 
                 +vIGe ++Ig+n++i++gv++G
  MMETSP0890-20130614|6606_1  80 VVIGETAKIGSNCTILHGVTLG 101
                 7999999999999999999998 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 5.9e-14
                 CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19   1 gtvIGenvlIgpnvvigggviIGdnviIgagvvigg 36 
                 +++IG+nv++g++++++g++i+Gd+++Ig+++v+++
  MMETSP0890-20130614|6606_1 111 HPKIGNNVVLGAGATVLGNIIVGDGATIGSQAVVTK 146
                 689*******************************86 PP

>> PF06426.9  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   1.7e-10   1.1e-06      79     105 .]       2      28 ..       1      28 [. 0.96

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.7e-10
                 HHHHH-TT--STHHHHHH----HHHHH CS
   PF06426.9  79 avkerDpAcesyleplLyfKGFqAlqa 105
                 a+ +rDpA+ s+l+ +++fKGF+A+qa
  MMETSP0890-20130614|6606_1   2 AILDRDPAAISCLQTVMFFKGFHAVQA 28 
                 99************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 686.23
//
Query:       MMETSP0890-20130614|6605_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-20   70.9   0.8    1.4e-19   69.8   0.6    1.6  1  PF06741.8  LsmAD domain
      0.001   19.3   3.0     0.0081   16.4   0.3    2.8  2  PF14438.1  SM domain found in Ataxin-2
  ------ inclusion threshold ------
       0.15   12.1   4.0       0.37   10.8   2.8    1.6  1  PF01783.18 Ribosomal L32p protein family


Domain annotation for each model (and alignments):
>> PF06741.8  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.6     3e-23   1.4e-19       1      72 []     117     185 ..     117     185 .. 0.97

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 3e-23
   PF06741.8   1 fGvkstFdeelYTtkLdkskpeykekeakAerlArEIessktknihiaeergdleddsgvdeEdkysaVsRk 72 
                 f+v stFde+lYTt++ + +    +  ++A+r+A +Ie   t+nih aeer+++ dds+++eEd +s+V R+
  MMETSP0890-20130614|6605_1 117 FNVSSTFDENLYTTPIPETS---PQLAERAARIAHDIEHARTSNIHRAEERNQKFDDSKFNEEDRFSGVTRN 185
                 89**************9998...788999*****************************************96 PP

>> PF14438.1  SM domain found in Ataxin-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   1.8e-06    0.0081      11     109 ..       2      80 ..       1      88 [. 0.79
   2 ?   -3.5   0.1       2.7   1.2e+04      46      63 ..     237     250 ..     227     266 .. 0.41

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.8e-06
   PF14438.1  11 iGskveVtlknGsvyeGilhaaspestn.fdvvLkaakvlkkedskgaksksivetliiqakdvvsieakdvdlssaestsaekkdgfrTDtdIsgsang 109
                 iG++++V+  + ++ +G++h+ +p ++   ++vLk               +s   t +i+ak + +i +k++ +++ +        +f+TD +Is+ + +
  MMETSP0890-20130614|6605_1   2 IGREIHVEQLENEEIQGLFHTSTPFKNSnHKFVLKGL-------------TSGGGTCVIDAKRISQIYVKSMVMARRQ--------KFETDEEISATTTK 80 
                 8999999999999999999999999764455555543.............344679******************8777........********887433 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.7
   PF14438.1  46 akvlkkedskgaksksiv 63 
                 ak+++ke    a +++++
  MMETSP0890-20130614|6605_1 237 AKETPKE----APRETPK 250
                 2333332....2222222 PP

>> PF01783.18  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.8   8.1e-05      0.37       3      25 ..     306     328 ..     304     332 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.1e-05
                 -SS---HHHHHHHTTTTS----- CS
  PF01783.18   3 PKrrtSksrrrkRrahwklkapn 25 
                 P+rr S+ rr+++r+h++ ++p+
  MMETSP0890-20130614|6605_1 306 PQRRNSNNRRNQHRQHHHQQPPQ 328
                 9****************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       686  (0.0501755); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:01.12
# Mc/sec: 1104.04
//
Query:       MMETSP0890-20130614|6609_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.22s 00:00:01.04 Elapsed: 00:00:01.12
# Mc/sec: 1130.32
//
Query:       MMETSP0890-20130614|6610_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-25   87.0   3.6    7.6e-07   29.0   0.0    6.9  7  PF13415.1  Galactose oxidase, central domain
    5.8e-25   86.7   1.2    5.1e-06   26.0   0.0    5.0  5  PF13418.1  Galactose oxidase, central domain
    4.6e-20   71.0   0.0    6.2e-05   22.7   0.0    5.6  5  PF13854.1  Kelch motif
      4e-16   58.3   0.1    0.00043   20.2   0.0    4.5  4  PF13964.1  Kelch motif
    7.1e-12   44.7   2.2     0.0008   19.2   0.1    4.7  5  PF07646.10 Kelch motif
    1.1e-10   40.7   0.0    0.00011   21.4   0.0    3.7  3  PF01344.20 Kelch motif


Domain annotation for each model (and alignments):
>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16   3.6e+02      34      47 ..      39      53 ..      25      55 .. 0.76
   2 !   14.5   0.0   1.1e-05     0.026       2      47 ..      58     109 ..      57     111 .. 0.90
   3 !   21.0   0.0   1.1e-07   0.00024       2      41 ..     113     160 ..     112     165 .. 0.88
   4 ?    1.1   0.0      0.18   4.1e+02      34      47 ..     196     210 ..     179     212 .. 0.81
   5 !   29.0   0.0   3.3e-10   7.6e-07       1      48 [.     213     263 ..     213     264 .. 0.90
   6 !   11.1   0.0   0.00014      0.32      14      35 ..     283     312 ..     268     324 .. 0.72
   7 ?    1.9   0.0       0.1   2.4e+02       2      17 ..     344     358 ..     344     367 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.16
   PF13415.1 34 i.gslPppRaghtat 47
                + g + ppR+g+ta 
  MMETSP0890-20130614|6610_1 39 TnGKITPPRSGATAI 53
                4577899*****985 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.1e-05
   PF13415.1   2 delyvfGGlgd..dgqtrlndvyvldldtntweei....gslPppRaghtat 47 
                 + +++f G+ +  ++   l d++ +  +++ w ++    +s P++R + +++
  MMETSP0890-20130614|6610_1  58 NGIILFSGYAEenESRRVLQDLWQFEENKDGWSRCektfSSEPGARLCSAGA 109
                 6699999988877789999**************999999**********987 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 1.1e-07
   PF13415.1   2 delyvfGGlgd....dgqtrlndvyvldldtntweei....gslPppR 41 
                 +e+++fGG+++    +g+  l d + l+l+t +w+++    ++ P+ R
  MMETSP0890-20130614|6610_1 113 NEFVLFGGWDPekegTGGIILDDIWSLNLATFEWTQLeqkmPRGPCSR 160
                 89***********9999******************9977777777766 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.18
   PF13415.1  34 i.gslPppRaghtat 47 
                 + g+ P+ R  h+a+
  MMETSP0890-20130614|6610_1 196 TkGPAPSSRGLHSAA 210
                 46999********97 PP

  == domain 5    score: 29.0 bits;  conditional E-value: 3.3e-10
   PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldtntweei....gslPppRaghtata 48 
                 gdel+vfGG +  +++ ++dvy l ++++tw+++     + P+pRag  a+a
  MMETSP0890-20130614|6610_1 213 GDELVVFGGAD-KSGNMCADVYALHTKSWTWRKVisqvEDGPTPRAGSCAAA 263
                 89*********.99******************88877777899999988876 PP

  == domain 6    score: 11.1 bits;  conditional E-value: 0.00014
   PF13415.1  14 gqtrlndvyvldldtntweei........g 35 
                 + ++ +d++ ldl++ tw+++        g
  MMETSP0890-20130614|6610_1 283 SLKPRADLWALDLSSATWTKLlddhhdaeG 312
                 566779*************98766665551 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.1
   PF13415.1   2 delyvfGGlgddgqtr 17 
                 d+++++GG+ +  q  
  MMETSP0890-20130614|6610_1 344 DRFLLHGGWHP-FQIT 358
                 6899*****95.3444 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.5e-07   0.00058       1      34 [.      46      82 ..      46     100 .. 0.88
   2 !   20.7   0.0   9.8e-08   0.00022       2      46 ..     103     155 ..     102     158 .. 0.82
   3 !   26.0   0.0   2.2e-09   5.1e-06       2      45 ..     204     247 ..     203     254 .. 0.88
   4 !   15.0   0.0     6e-06     0.014       1      44 [.     255     303 ..     255     313 .. 0.89
   5 ?   -1.6   0.0      0.94   2.1e+03      13      20 ..     344     351 ..     333     366 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.5e-07
   PF13418.1  1 pRaghsavavpdgrlylfGGenedg...gplnDlyvf 34
                pR g++a++++d++++lf G+ e+     +l Dl++f
  MMETSP0890-20130614|6610_1 46 PRSGATAISTDDNGIILFSGYAEENesrRVLQDLWQF 82
                8***********************9**********97 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 9.8e-08
   PF13418.1   2 RaghsavavpdgrlylfGGenedg.....gplnDlyvfDlstntWtrl....ps 46 
                 R + +  ++  + ++lfGG +++       +l+D++ ++l+t +Wt+l    p 
  MMETSP0890-20130614|6610_1 103 RLCSAGAFC-ENEFVLFGGWDPEKegtggIILDDIWSLNLATFEWTQLeqkmPR 155
                 555566667.479*********9999*********************9655555 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 2.2e-09
   PF13418.1   2 RaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl.p 45 
                 R+ hsa  v+ + l++fGG++ +g  + D+y + +++ tW+++ +
  MMETSP0890-20130614|6610_1 204 RGLHSAAMVG-DELVVFGGADKSGNMCADVYALHTKSWTWRKViS 247
                 999******7.6****************************99852 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 6e-06
   PF13418.1   1 pRaghsavav.pdgrlylfGGenedg....gplnDlyvfDlstntWtrl 44 
                 pRag +a a+ +d+++++  G++ +     +p  Dl+ +Dls+ tWt+l
  MMETSP0890-20130614|6610_1 255 PRAGSCAAALsDDRTFIMSCGAQRESdgslKPRADLWALDLSSATWTKL 303
                 89999999985667899999***99999*******************98 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 0.94
   PF13418.1  13 grlylfGG 20 
                 +r++l+GG
  MMETSP0890-20130614|6610_1 344 DRFLLHGG 351
                 78888988 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.022        51       3      24 ..      45      67 ..      45      82 .. 0.83
   2 !   22.7   0.0   2.7e-08   6.2e-05       2      42 .]     100     144 ..      99     144 .. 0.92
   3 !   22.2   0.0   3.8e-08   8.6e-05       2      41 ..     201     239 ..     200     240 .. 0.92
   4 !    9.0   0.0   0.00052       1.2       2      40 ..     253     296 ..     252     298 .. 0.76
   5 !    6.1   0.0    0.0043       9.8      15      39 ..     344     367 ..     318     368 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.022
   PF13854.1  3 ppRarhcavvvsgn.iylyGGks 24
                ppR+++ a+  ++n i+l++G+ 
  MMETSP0890-20130614|6610_1 45 PPRSGATAISTDDNgIILFSGYA 67
                79******9888777******97 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 2.7e-08
   PF13854.1   2 PppRarhcavvvsgniylyGGksg....nddsvsddvyvLslpsf 42 
                 P +R +++ + +++++ l+GG++     ++++++dd++ L+l +f
  MMETSP0890-20130614|6610_1 100 PGARLCSAGAFCENEFVLFGGWDPekegTGGIILDDIWSLNLATF 144
                 99*********************5556689999********9998 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 3.8e-08
   PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLslps 41 
                 P++R  h+a++v++++ ++GG +  +++ + dvy L ++s
  MMETSP0890-20130614|6610_1 201 PSSRGLHSAAMVGDELVVFGGAD-KSGNMCADVYALHTKS 239
                 999999*****************.59********998876 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.00052
   PF13854.1   2 PppRarhcavvvsg..niylyGGksgnddsvs....ddvyvLslp 40 
                 P+pRa++ca+++s+   +++  G +  ++++s     d++ L+l 
  MMETSP0890-20130614|6610_1 253 PTPRAGSCAAALSDdrTFIMSCGAQR-ESDGSlkprADLWALDLS 296
                 9**********997456888888885.555444677888888876 PP

  == domain 5    score: 6.1 bits;  conditional E-value: 0.0043
   PF13854.1  15 gniylyGGksgnddsvsddvyvLsl 39 
                 + ++l+GG+  + ++ +dd ++L +
  MMETSP0890-20130614|6610_1 344 DRFLLHGGWH-PFQITFDDTFILEI 367
                 5789******.8*********9965 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0003      0.68       1      44 [.      46      93 ..      46      98 .. 0.87
   2 !   15.3   0.0   6.6e-06     0.015       4      48 ..     105     155 ..     102     160 .. 0.84
   3 !   20.2   0.0   1.9e-07   0.00043       5      43 ..     207     245 ..     203     257 .. 0.91
   4 !    7.3   0.0    0.0022       5.1       5      43 ..     260     303 ..     254     306 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0003
   PF13964.1  1 praghsavs.vggkiyifGGytns...gkylndvlvydpetksWeqlp 44
                pr g +a+s ++++i +f+Gy       + l d++ +    + W++++
  MMETSP0890-20130614|6610_1 46 PRSGATAIStDDNGIILFSGYAEEnesRRVLQDLWQFEENKDGWSRCE 93
                5788888883567********9989**************999**9886 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 6.6e-06
   PF13964.1   4 ghsavsvggkiyifGGytns.....gkylndvlvydpetksWeqlpp.lpv 48 
                 + + + + + +++fGG +       g  l+d++ +++ t  W+ql++ +p 
  MMETSP0890-20130614|6610_1 105 CSAGAFCENEFVLFGGWDPEkegtgGIILDDIWSLNLATFEWTQLEQkMPR 155
                 444478999********9889************************854883 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.9e-07
   PF13964.1   5 hsavsvggkiyifGGytnsgkylndvlvydpetksWeql 43 
                 hsa+ vg+ +++fGG++ sg+ + dv+ ++ ++++W+++
  MMETSP0890-20130614|6610_1 207 HSAAMVGDELVVFGGADKSGNMCADVYALHTKSWTWRKV 245
                 9***********************************985 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0022
   PF13964.1   5 hsavsvggkiyifGGytns.....gkylndvlvydpetksWeql 43 
                 ++a++ +++ +i++   +       k+  d++ +d+++ +W++l
  MMETSP0890-20130614|6610_1 260 CAAALSDDRTFIMSCGAQResdgsLKPRADLWALDLSSATWTKL 303
                 445556665555533333346999*****************986 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00028      0.64       3      45 ..      48      92 ..      46      95 .. 0.83
   2 !    8.5   0.0   0.00086         2       9      47 ..     110     151 ..      98     153 .. 0.87
   3 ?   -3.0   0.0       3.7   8.4e+03       1      12 [.     157     169 ..     157     174 .. 0.61
   4 !   19.2   0.1   3.5e-07    0.0008       2      45 ..     204     245 ..     203     247 .. 0.93
   5 ?    2.9   0.0     0.052   1.2e+02       6      45 ..     261     303 ..     256     305 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00028
  PF07646.10  3 yghsavvp.ggkiyvvGGa.htdngllsssdlnvldpeknvWeel 45
                +g +a +  ++ i+++ G+ ++ +  +++ dl+ + ++k  W+++
  MMETSP0890-20130614|6610_1 48 SGATAISTdDNGIILFSGYaEENESRRVLQDLWQFEENKDGWSRC 92
                4444443349********************************986 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00086
  PF07646.10   9 vpggkiyvvGGa...htdngllsssdlnvldpeknvWeeltp 47 
                  +++  +++GG+    ++ g+  ++d++ l++ + +W+ l +
  MMETSP0890-20130614|6610_1 110 FCENEFVLFGGWdpeKEGTGGIILDDIWSLNLATFEWTQLEQ 151
                 4578889*******************************9876 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.7
  PF07646.10   1 pryghsavvp.gg 12 
                 p+++h+a+ + g 
  MMETSP0890-20130614|6610_1 157 PCSRHIACALpGK 169
                 5678888855255 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 3.5e-07
  PF07646.10   2 ryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeel 45 
                 r+ hsa+++g+ ++v+GGa  d  +  + d++ l +++++W+++
  MMETSP0890-20130614|6610_1 204 RGLHSAAMVGDELVVFGGA--DKSGNMCADVYALHTKSWTWRKV 245
                 889****************..99999999************997 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.052
  PF07646.10   6 savvpggkiyv.vGGa..htdngllsssdlnvldpeknvWeel 45 
                 +a+ +++++++  +Ga  ++d+ l    dl+ ld+++ +W++l
  MMETSP0890-20130614|6610_1 261 AAALSDDRTFImSCGAqrESDGSLKPRADLWALDLSSATWTKL 303
                 55555555543156777777777777789***********986 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.7e-05      0.15       1      43 [.     102     149 ..     102     153 .. 0.92
   2 !   21.4   0.0     5e-08   0.00011       2      43 ..     204     245 ..     203     247 .. 0.95
   3 ?    3.3   0.0     0.023        52      28      43 ..     288     303 ..     280     303 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
                 SSSCEEEEEETTEEEEE---BS.....TTS-TTEEEEEETTTTEEEEE CS
  PF01344.20   1 arssagvvvldgkiYviGGrdg.....dtnalnsVerYDpvtntWekl 43 
                 ar + + + + ++   +GG+d+      + +l++++ +++ t +W++l
  MMETSP0890-20130614|6610_1 102 ARLCSAGAFCENEFVLFGGWDPekegtGGIILDDIWSLNLATFEWTQL 149
                 577788889999999******************************987 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 5e-08
                 SSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEEEE CS
  PF01344.20   2 rssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWekl 43 
                 r  ++++ +++++ v+GG d ++n   +V+ +++++ tW+k+
  MMETSP0890-20130614|6610_1 204 RGLHSAAMVGDELVVFGGADKSGNMCADVYALHTKSWTWRKV 245
                 6789************************************97 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.023
                 TEEEEEETTTTEEEEE CS
  PF01344.20  28 nsVerYDpvtntWekl 43 
                  + + +D+ + tW+kl
  MMETSP0890-20130614|6610_1 288 ADLWALDLSSATWTKL 303
                 6899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.22s 00:00:00.85 Elapsed: 00:00:01.02
# Mc/sec: 866.92
//
Query:       MMETSP0890-20130614|6608_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-24   85.4   0.0    6.2e-24   83.5   0.0    2.0  2  PF00085.15 Thioredoxin
      0.002   18.1   0.1      0.011   15.7   0.0    2.4  1  PF13905.1  Thioredoxin-like
     0.0032   17.5   0.2      0.084   12.9   0.1    2.9  2  PF13098.1  Thioredoxin-like domain
     0.0072   16.2   0.0      0.023   14.6   0.0    1.9  1  PF13899.1  Thioredoxin-like


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   1.8e-27   6.2e-24       2     103 ..      33     134 ..      32     135 .. 0.94
   2 ?   -3.0   0.0       1.5   5.2e+03      41      63 ..     370     393 ..     368     395 .. 0.78

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 1.8e-27
                 EEESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-..TSEEEEEETTTTHHHHHHT.T--SSSEEEEESSSSEEEEE---.-HHHHHHHHHH CS
  PF00085.15   2 vlvltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelke..kvvlakvdvdenkdlasey.gvegiPtlklfkngkkveevegarekeklvaflkk 103
                 v++lt++n++++ +   ++ lv +yA wCGhCkalaP+++k+a++l++   v++  vd+++n+ + s+y +++g+Pt+k++ + +k+e+++g+re+++l++f k+
  MMETSP0890-20130614|6608_1  33 VVELTDANYDTKTKT--EPYLVMYYAVWCGHCKALAPKWKKAAKDLEKfsGVKMGAVDIENNRGIQSKYpDIRGFPTIKFVYG-NKAEDYNGPREADDLIQFAKE 134
                 6899*******9999..********************************9**************9999978********9975.6788*************9976 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.5
                 HHHHHHTT-.TSEEEEEETTTTHH CS
  PF00085.15  41 eklaeelke.kvvlakvdvdenkd 63 
                 ++la +++   +++a +d+++ ++
  MMETSP0890-20130614|6608_1 370 DALAVKYARnGFQFAALDTTNAPE 393
                 567778877789999999998765 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.2e-06     0.011       3      32 ..      49      78 ..      46     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.2e-06
   PF13905.1  3 ivllyfaaswcppckaftpelkelyeklka 32
                ++l++++a wc++cka +p++k+  ++l++
  MMETSP0890-20130614|6608_1 49 PYLVMYYAVWCGHCKALAPKWKKAAKDLEK 78
                789***********************9985 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.5e-05     0.084       4     110 ..      46     130 ..      43     132 .. 0.71
   2 ?   -2.3   0.0       1.3   4.3e+03      24      53 ..     363     393 ..     363     426 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-05
   PF13098.1   4 ngkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrkl.gvrgtPtivfldgeGklvarlpGylpaeelek 110
                 + ++ +v++ +++C+ Ck l ++ kk ++  ++++ ++++ +v+i++++                     +  k+ ++rg Pti f+   G++   ++G   a++l +
  MMETSP0890-20130614|6608_1  46 KTEPYLVMYYAVWCGHCKALAPKWKKAAKDLEKFS-GVKMGAVDIENNR--------------------GIQSKYpDIRGFPTIKFVY--GNKAEDYNGPREADDLIQ 130
                 6788999*****************98766555554.7888888888655....................4555555677777777776..445556777777776665 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.3
   PF13098.1  24 hkelkklndvtkyl.kdkfeviyvnidkske 53 
                 hk l+ l+++++++ +++f++++++  +++e
  MMETSP0890-20130614|6608_1 363 HKALQGLDALAVKYaRNGFQFAALDTTNAPE 393
                 5666667775555525568888887765543 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.6e-06     0.023      13      77 ..      43     108 ..      33     112 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.6e-06
   PF13899.1  13 areegkpllvifgadwcpdCqald.rdvlsdeevkaalaekfvllrvdvterdanl..eldrqgvPvv 77 
                  + +  p lv+ +a wc++C+al+ ++  + +++++ + +++ +  vd+++  + +   +d +g+P++
  MMETSP0890-20130614|6608_1  43 TKTKTEPYLVMYYAVWCGHCKALApKWKKAAKDLEK-F-SGVKMGAVDIENNRGIQskYPDIRGFPTI 108
                 567789*****************6145555556655.3.45666666665444422123333667766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:01.29
# Mc/sec: 895.38
//
Query:       MMETSP0890-20130614|6616_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-34  118.6   0.0    2.2e-27   95.8   0.0    2.0  2  PF01263.15 Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> PF01263.15  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   1.6e-31   2.2e-27       2     224 ..      36     238 ..      35     266 .. 0.86
   2 !   20.9   0.0   1.1e-08   0.00015     248     293 ..     286     332 ..     283     338 .. 0.92

  Alignments for each domain:
  == domain 1    score: 95.8 bits;  conditional E-value: 1.6e-31
                 EEEEETTTEEEEEEET---EEEEEEETT.SCEBSB---CSHHHHHHSCG-HHEETSC-SEEEGGEEE----EEECCECBT........TTEEETTBGGGSB-EEEEEEE.....CTEEEEEEEEEECTTHC..STS-EEEEEEEEEETTEEEEEEEEEEESC.SEEEEBEEE--EEETSCC-CTGGEEEEEEEEEEEECTTS-EE-EEEECTTECTCGSSCCCCCSSCTEEEEEEEESS CS
  PF01263.15   2 litlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdayfGatlgrvanRianGeFeldGkpyqlpknee........gknplHGgargrkWeveekke.....ddgvtvslvlkpdgeeg..fpgdlevrvtytLnednelkieyeatndg.kptpfnltnHtYFnlsgesidehelqieadeylevdeeliptgeikdvkgtpfdfrqpkaigedlkglDhayvlkk 224
                 +i+l +  g  a+++ +G+t++++ + d  + + l+ s++          ++++g++a+R   G     G+p  +p++++        + +++HG+ar + We++++ +       +++ +l+l++++e +  +p+++e+++ ++L+++  l+ e+++tn +  p   ++ +HtY++      d++ ++++++ +    +         ++++t++ ++++++i ++  ++D+++ +  
  MMETSP0890-20130614|6616_1  36 KIELLHSSGAFAEVYAFGGTVTKYVTAD--GVDMLWVSNS----------AKFDGKKAIR---G-----GIPLVYPQFGPkadsllgvESMSQHGFARISHWEIVSTLTevrvdSGDCQATLRLRENKETTkiWPHKFELTYIVRLSATA-LRTELRITNLDdAPVQPQALLHTYYRTD----DISDVRVSGLATKSKFD---------QLTSTTT-TQDATPISFTK-EFDCVFDGGI 238
                 67888889999*****************..99********..........6*********...8.....************************************99999***98999999999888885569***************98.**********7666666789********....*********55544444.........6777777.89999999997.9999998876 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.1e-08
                 SEEEEEE-TTS-.CEECCEEECCETTCECCCCCTTTTT-EEECTT-E CS
  PF01263.15 248 palvvytgnflk.kylsreglaletqflpdepnhpefpsiilkpGes 293
                 p++vv++++ +k k +s++ ++++t+++++ep+  +++  +  pG s
  MMETSP0890-20130614|6616_1 286 PDVVVWNPHINKaKAMSDFDDDGWTKMFCVEPGILNSRRPVISPGNS 332
                 89*******************************99999889988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 1052.58
//
Query:       MMETSP0890-20130614|6620_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   13.2   0.7      0.042   13.2   0.5    2.0  2  PF06298.6 Photosystem II protein Y (PsbY)
       0.29   10.1   5.2       0.44    9.5   3.6    1.3  1  PF09721.5 Transmembrane exosortase (Exosortase_EpsH)


Domain annotation for each model (and alignments):
>> PF06298.6  Photosystem II protein Y (PsbY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.6       1.7   1.1e+04      10      16 ..      44      50 ..      43      50 .. 0.70
   2 ?   13.2   0.5   6.1e-06     0.042      10      36 .]      72      98 ..      67      98 .. 0.90

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 1.7
   PF06298.6 10 aPIllAa 16
                +P +lAa
  MMETSP0890-20130614|6620_1 44 LPAVLAA 50
                7878886 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.1e-06
   PF06298.6 10 aPIllAagWAvfNIgkaAlgQlqklls 36
                 P+++Aa+ A+  Ig  Al+Qlq+++s
  MMETSP0890-20130614|6620_1 72 FPLIVAATVALLVIGPGALQQLQRVFS 98
                6***********************875 PP

>> PF09721.5  Transmembrane exosortase (Exosortase_EpsH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.6   6.5e-05      0.44      48     109 ..      27      94 ..       3      99 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 6.5e-05
   PF09721.5  48 l...akasakpspl.glfllalalllllyllgslsyv.lllailalpllllgllllll.grkslralt 109
                      +++++p++l g++ ++la++++ ++l   + v ++l ++++pl+++++++ll+ g+ +l++l 
  MMETSP0890-20130614|6620_1  27 QapaVQSPVAPAALaGVLPAVLAAQPAGAALPDVAGVpGALILTGFPLIVAATVALLViGPGALQQLQ 94 
                 1344555666666679999999999999999999**************99988877764777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.33s 00:00:00.71 Elapsed: 00:00:00.91
# Mc/sec: 287.04
//
Query:       MMETSP0890-20130614|6623_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:01.06
# Mc/sec: 241.90
//
Query:       MMETSP0890-20130614|6624_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-19   67.9   1.5    1.4e-18   67.0   1.1    1.4  1  PF11969.3  Scavenger mRNA decapping enzyme C-term binding
      9e-11   42.0   0.3    1.6e-10   41.3   0.2    1.4  1  PF01230.18 HIT domain


Domain annotation for each model (and alignments):
>> PF11969.3  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   1.1     2e-22   1.4e-18      11     116 .]      59     166 ..      54     166 .. 0.89

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 2e-22
                 SS-B-EEEE-SSEE.EEE-SS-SSSS-EEEEESS....--SSGGG--TTCCCHHHHHHHHHHHHHHH-------EEE----------S-S--EEEE-........----- CS
   PF11969.3  11 kepenvvyedekav.vfkDikpkaslHllvipkr...kdikslrdltkehlplLkemrekakkvieekynedlnkdelrlgfhyppsvyhLHlHvisldfespglkrkkh 116
                 + +++++y ++++v  + D+ pka++H+l++pk     +++++ dl++ hl+ Lk+ ++ +++++++   + l   +l +g+h +ps++ LH+H+is dfes+ lk+kkh
  MMETSP0890-20130614|6624_1  59 EPATELIYTEDDCVrFIYDAFPKAQIHILALPKIpslAKLDTVSDLRPIHLEHLKQFHRRIHEAAKSLA-A-LTNVQLLIGYHSEPSMALLHCHIISDDFESQYLKTKKH 166
                 456677886666662678**************987778999************************9988.4.8**********************************997 PP

>> PF01230.18  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   2.3e-14   1.6e-10       6      97 ..      62     156 ..      58     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 2.3e-14
  PF01230.18   6 stvvyeddlvl.afldidpkapghlLvipkk.hlselhdlt...eeelakllslvkkvakalqkkfknkglrvvinngahagqsvahlHiHviprre 97 
                 ++++y+ d+++  + d +pka++h+L +pk   l++l+ ++   +  l +l +  +++++a +   + + ++++i  g h+ +s+a lH H+i+ ++
  MMETSP0890-20130614|6624_1  62 TELIYTEDDCVrFIYDAFPKAQIHILALPKIpSLAKLDTVSdlrPIHLEHLKQFHRRIHEAAKSLAALTNVQLLI--GYHSEPSMALLHCHIISDDF 156
                 566776666652679**************9866555554444449999999999999999999966666666666..****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.80
# Mc/sec: 754.85
//
Query:       MMETSP0890-20130614|6625_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-16   58.5   0.0    8.7e-16   57.8   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    1.9e-12   47.5   0.2    4.3e-12   46.3   0.1    1.6  1  PF12697.2  Alpha/beta hydrolase family
    8.7e-10   38.3   0.0      2e-09   37.1   0.0    1.6  2  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
     0.0011   18.6   0.0     0.0023   17.6   0.0    1.5  1  PF12146.3  Putative lysophospholipase
     0.0017   17.8   0.1       0.13   11.6   0.0    2.3  2  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.016   14.3   0.0       0.14   11.2   0.0    2.1  1  PF00326.16 Prolyl oligopeptidase family
       0.02   13.6   0.0       0.58    8.8   0.0    2.3  2  PF09752.4  Uncharacterized conserved protein (DUF2048)
      0.061   12.6   0.0       0.13   11.5   0.0    1.4  1  PF00756.15 Putative esterase


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   5.1e-19   8.7e-16       1     129 [.     255     446 ..     255     460 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 5.1e-19
   PF12695.2   1 lvvlvhGaggd.ssayeplaealakr.gfavvavdlpghgasegaa.........aakrvlaadll....dleriilvGhSlGGgvalelagrd.drvkglvllapf...pd.gedlakltl.........................................pvllihGtrDgvvppeeaeklakalp...g 129
                 +++++hG++++  +a+++la  l    g++v+a+d  g+g+s+g+          ++ +v+ ++ +    ++++++l+G+S+G+ +a+++a+ + ++ ++l+l ++f   p+   d+a+ ++                                         p l+i +++D++v p+++++l++ lp   +
  MMETSP0890-20130614|6625_1 255 TIIYLHGNASSrVEALAQLALCLNLGnGVQVIALDCCGSGKSQGEYvslgfkeqeDVLAVV-DKEKqtkrGIGHLALWGRSMGAVTAMLVASTRlPETSALILDSAFsslPElALDIARRGAshlpafvfrsalrwirdgikrradfdivdvdaarhapecvvPALFIAASDDNFVEPKHSATLLSLLPdcgN 446
                 69********9557899***9998777***************7666667776555666666.3333467899*********************99***********85554444455555558889999999999999999*******************************************999995541 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.1   2.5e-15   4.3e-12       1     211 [.     256     456 ..     256     462 .. 0.71

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 2.5e-15
                 EEE--------.----HHHHHHT..TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--......--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTE......EEEE-- CS
   PF12697.2   1 vvllHGlggsa.eswrplaeaLa..agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl.....rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpga......rvvvlp 211
                 ++ lHG+ +s  e  + la  L   +g++v+a+D  G G S +   y    + ++ +d++a++d+        + + l+G S+G+++a+++a+ r    ++l+l +++ +lp+         l+ ++++++a  l ++  r+  r++         r+  ++ a++      d d++++++   vP+l+ia+++D +v p + + l   lp++      +  ++p
  MMETSP0890-20130614|6625_1 256 IIYLHGNASSRvEALAQLALCLNlgNGVQVIALDCCGSGKSQGE--YVSLGFKEQ-EDVLAVVDKEKQtkrgiGHLALWGRSMGAVTAMLVASTRLPETSALILDSAFSSLPE---------LALDIARRGASHLPAFVFRSALRWI---------RDGIKRRADFD---IVDVDAARHAPECVVPALFIAASDDNFVEPKHSATLLSLLPDCgnnnhsQQCIVP 456
                 6889****999444444444554779****************94..444555554.899****997777777799*****************998878***********6544.........3444444444444444444444444.........22111111111...35667778888888***************************97444444555555 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.2e-12     2e-09      33     140 ..     234     365 ..     209     411 .. 0.79
   2 ?   -2.7   0.0       1.6   2.7e+03     220     270 ..     407     459 ..     384     460 .. 0.75

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.2e-12
                 H.HHHHHCTCHHCCH...HH........................HHC---EEEEEE----TT------TTTCCHHHHHHHHHHHHHHCTTBE-EEEE---TT---HHHHHTTS--TTB-EBEEBSB-SBCHH CS
  PF02129.13  33 delaatlasalgekelqdka........................fvarGYavVvvdvrGtgaSeGeftvgsedevedgadvidWlakqpwsnGkVGmtGiSYdGttqlaaaatgvpalkaivpesaisdlyd 140
                 +++++++++ +++k++++ +                         + +G  v+  d+ G+g+S+Ge+++ + +e+ed+ +v+d  ++ +   G+ + +G S +++t++++a+t+ p+  a +  sa s+l +
  MMETSP0890-20130614|6625_1 234 SKRKKDQRQRTQKKTQERVQatiiylhgnassrvealaqlalclNLGNGVQVIALDCCGSGKSQGEYVSLGFKEQEDVLAVVDKEKQTKRGIGHLALWGRSMGAVTAMLVASTRLPETSALILDSAFSSLPE 365
                 3333333333333332322256888999999999999999999999*************************************88888*************************************9999755 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
                 HGGGHHG--SEEEEEE--B-SSS-.HHHHHHHHHHCCTT-...EEEEE---BS CS
  PF02129.13 220 lsedadkvkvpvllvsGwnDwnvk.rgviklyealkesgs.kekklvlgpwtH 270
                 + ++a +  vp+l+++   D+ v  +++  l + l++ g+ ++++  + p++H
  MMETSP0890-20130614|6625_1 407 AARHAPECVVPALFIAASDDNFVEpKHSATLLSLLPDCGNnNHSQQCIVPGSH 459
                 44567788899999999999666699999999999999875444666778888 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06    0.0023      10      62 ..     248     301 ..     240     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-06
   PF12146.3  10 lpeep.pkaavvlvhgla.EhsgrYqelaedLaa.qGyavyayDhrGhGksegerg 62 
                 +  ++  +a+++++hg a       ++la  L+  +G++v+a+D  G Gks+ge  
  MMETSP0890-20130614|6625_1 248 T--QErVQATIIYLHGNAsSRVEALAQLALCLNLgNGVQVIALDCCGSGKSQGEYV 301
                 3..33489*********8455668********976*****************9764 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.6e-05      0.13       2      78 ..     284     360 ..     283     397 .. 0.83
   2 ?    3.7   0.0      0.02        34     176     215 ..     416     460 ..     414     472 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.6e-05
                 EEEEEE--------E...S.GGGGSHHHHHHHHHHHHH.HSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB- CS
  PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavld.alglkkltlvGhSmGGmialayaaeypdrvkamvllgtv 78 
                 +vi+lD  G+g+S+      l     +d+ + +++  + + g+ +l+l+G SmG+ +a  +a+    + +a++l++++
  MMETSP0890-20130614|6625_1 284 QVIALDCCGSGKSQG-EYVSLGFKEQEDVLAVVDKEKQtKRGIGHLALWGRSMGAVTAMLVASTRLPETSALILDSAF 360
                 699999999999996.2677777788999*********999*********************9988889999999986 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.02
                 SSEEEEECCTTSCCHHCHHHHHHHCSTT......EEEEEETTHHCS CS
  PF00561.15 176 vptlvisgtdDplvpykaseklaelipk......sqlvvidgpgHl 215
                 vp l i + dD++v +k+s  l  l+p       sq + ++g +H 
  MMETSP0890-20130614|6625_1 416 VPALFIAASDDNFVEPKHSATLLSLLPDcgnnnhSQQCIVPG-SHN 460
                 79*******************999999988888888888888.775 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.2e-05      0.14      43     202 ..     306     471 ..     277     482 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-.............---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES---------HHHHHHHHHH CS
  PF00326.16  43 nefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsl...........lteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegHgigkprakveelarl 202
                 +e +D++a++++ + +      +la++G S G ++++ ++  r    +a++  ++++ +    +d                + ++  +g +++   +  ++ ++++a +    +p l+i ++ D+ v p+++++l++ L + g+n +  +      H + +p+   +   ++
  MMETSP0890-20130614|6625_1 306 KEQEDVLAVVDKEK-QTKRGIGHLALWGRSMGAVTAMLVASTRLPETSALILDSAFSSLPELALDIARrgashlpafvfRSALRWIRDGIKRRADFDIVDVDAARHAPE--CVVPALFIAASDDNFVEPKHSATLLSLLPDCGNNnHSQQCIVPGSHNSTRPT---HCFDQI 471
                 55666666666543.3344456788888888888777777755555566666666666555444421122333355554233377777777665555667777777777..*****************************88888776666666678444444...444444 PP

>> PF09752.4  Uncharacterized conserved protein (DUF2048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00034      0.58     171     195 ..     322     346 ..     306     363 .. 0.81
   2 ?    2.1   0.0     0.038        65     292     319 ..     417     444 ..     397     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00034
   PF09752.4 171 eeGygplgvtGlSmGGhmaslaasn 195
                 + G+g+l++ G SmG + a l+as+
  MMETSP0890-20130614|6625_1 322 KRGIGHLALWGRSMGAVTAMLVAST 346
                 44*******************9985 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.038
   PF09752.4 292 liivvaakdDayvpreevaslqeiwpgs 319
                  + ++aa+dD++v  ++ a+l ++ p++
  MMETSP0890-20130614|6625_1 417 PALFIAASDDNFVEPKHSATLLSLLPDC 444
                 5789*********888888888888877 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.4e-05      0.13     100     135 ..     309     346 ..     298     360 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.4e-05
                 TCHHHHHHHHH-B----..EEEE--THHHHHHHHHHHH CS
  PF00756.15 100 qeLlplldanfrtapdg..ravaGqSmGGlgALilalk 135
                 + +l ++d++++t++     a++G SmG+++A+++a++
  MMETSP0890-20130614|6625_1 309 EDVLAVVDKEKQTKRGIghLALWGRSMGAVTAMLVAST 346
                 56889999999999988999**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       667  (0.0487858); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.84
# Mc/sec: 1657.48
//
Query:       MMETSP0890-20130614|6622_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   12.8   0.3       0.38    9.8   0.0    2.2  2  PF11286.3 Protein of unknown function (DUF3087)
       0.62    9.7   6.6        1.3    8.7   1.5    3.2  2  PF13290.1 Chitobiase/beta-hexosaminidase C-terminal domain


Domain annotation for each model (and alignments):
>> PF11286.3  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.6e-05      0.38     123     162 ..      79     118 ..      73     120 .. 0.91
   2 ?    0.2   0.0     0.049   3.4e+02     128     163 ..     213     248 ..     207     249 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.6e-05
   PF11286.3 123 qvyeLDdNtltlselekeiekleeliaelgltldaddfee 162
                   y+LD+ t+tl++++++ + ++++++e+++tl+  ++++
  MMETSP0890-20130614|6622_1  79 EAYTLDGSTITLDNVDEDGDCVHDALDEYDVTLESITYDA 118
                 67*******************************9988875 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.049
   PF11286.3 128 DdNtltlselekeiekleeliaelgltldaddfees 163
                 D+ tltl++ +k+ + +++ ++e +++l+  ++++s
  MMETSP0890-20130614|6622_1 213 DGSTLTLDNASKSGDCVHDDLKEENVDLESISYDSS 248
                 8899************************99999875 PP

>> PF13290.1  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   0.00018       1.3       9      35 ..      69     112 ..      38     147 .. 0.66
   2 ?    1.6   0.1      0.03   2.1e+02      12      36 ..     199     221 ..     186     274 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00018
   PF13290.1   9 nqkvtlstatpgatIyYTtDGsePtt.....................s 35 
                 ++ v+ls+a++     YT+DGs+ t+                     +
  MMETSP0890-20130614|6622_1  69 SGPVSLSCADE----AYTLDGSTITLdnvdedgdcvhdaldeydvtlE 112
                 56778877554....4*********95444444444444444444433 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.03
   PF13290.1  12 vtlstatpgatIyYTtDGsePttss 36 
                 +tl + +++ t    tDGs+ t+++
  MMETSP0890-20130614|6622_1 199 ITLECDDEPYTL--ATDGSTLTLDN 221
                 555555555444..38999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.70
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|6631_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-22   79.3   0.0    4.4e-22   78.2   0.0    1.6  1  PF07738.8 Sad1 / UNC-like C-terminal


Domain annotation for each model (and alignments):
>> PF07738.8  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.2e-26   4.4e-22      18     134 ..     428     552 ..     423     553 .] 0.91

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.2e-26
   PF07738.8  18 kyspgeCwsfkgsrgfvvieLseeiiveavtlehveksvap......isSapkdfevlgseespeek..wvllgefsy.dedgknaqtFeleeskdslvkyvkleilsnyGseeytclyrlrVyGt 134
                 ++ +g C++f+g++g+++i+L+ ++i++++ leh++ ++a       + Sap +f+++g+ + + ++     lg f + +  +++ q Fele+s+ +l   v l++ sn+G+++ytc+yr+ Vy+t
  MMETSP0890-20130614|6631_1 428 HLPVGHCFAFSGTKGQLAIQLAVPVIPTKFVLEHAAAAMANssvfghTTSAPANFSLIGYPTHQLRQtpSYSLGSFIFqNPLSSHRQVFELEKSPVDLSALV-LQVHSNHGHPDYTCIYRVAVYAT 552
                 56689********************************99999999999************99998888899*******67778999********96666666.*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1377  (0.100717); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:00.65
# Mc/sec: 2038.75
//
Query:       MMETSP0890-20130614|6630_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   25.3   0.0    2.5e-05   24.3   0.0    1.5  1  PF13472.1 GDSL-like Lipase/Acylhydrolase family
  ------ inclusion threshold ------
      0.066   12.7   3.3       0.17   11.3   0.5    2.3  2  PF12790.2 Type VI secretion lipoprotein


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.6e-09   2.5e-05     125     178 ..      22      84 ..       2      85 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.6e-09
   PF13472.1 125 rdaldalnealaeaAaaygvtyvdlaaafa..dhegwdkdlla.......pdglHPnaaGyaa 178
                 +   +++ ++++++ +a++++++dl++ f+  d+e  d++ +        +d +HPn+aG+ +
  MMETSP0890-20130614|6630_1  22 NVINEEVPNVIQQMGQANDLPVIDLRPGFEfpDDEEQDDEDFLsanpdlyDDSIHPNDAGHLV 84 
                 555678889*******************7765544444443346999998***********65 PP

>> PF12790.2  Type VI secretion lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.038   2.6e+02      19      83 ..     384     448 ..     374     465 .. 0.86
   2 ?   11.3   0.5   2.5e-05      0.17      14      60 ..     549     595 ..     537     638 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.038
   PF12790.2  19 epkevtltltadadlNpnaegrpspvvvrvyqLkddsaFeqadfdslaeddkevlgadllavdel 83 
                  +++++++++ +   N +ae+ ++ ++ ++    +d ++++a  ++  ++ ++vl ++ +++d+ 
  MMETSP0890-20130614|6630_1 384 TATRIDFEVEESISANEDAEDIAEDIMTKLTTAIEDGSLDSALTNAASTQGSTVLTSASISRDDS 448
                 567888888888899****************************************9999998874 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.5e-05
   PF12790.2  14 adaekepkevtltltadadlNpnaegrpspvvvrvyqLkddsaFeqa 60 
                 ++  +++k+ +++ ++d+d+N+n +++ +p+vv  y  + +++ +++
  MMETSP0890-20130614|6630_1 549 PSLSPRTKKKNVETKSDQDINTNINDKETPLVVDTYPSSAAQKTDNM 595
                 555678889999************************99988887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       757  (0.0553686); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.30u 0.41s 00:00:01.71 Elapsed: 00:00:01.01
# Mc/sec: 1824.55
//
Query:       MMETSP0890-20130614|6636_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-06   25.9   0.0    1.9e-05   24.6   0.0    1.7  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    0.00024   20.9   0.0     0.0004   20.1   0.0    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
     0.0038   16.9   0.1     0.0099   15.6   0.0    1.8  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.078   13.1   0.0       0.22   11.6   0.0    1.8  1  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.5e-09   1.9e-05       2      72 ..      17      96 ..      16      99 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5.5e-09
                EEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHH..HHHHHHCTTT.......S-SSEEEETTTEEEESHHHHHH CS
  PF02798.15  2 tltlfnhrgraeslrillaekgveyeivrvdfeagegks..pewlklnpki.......grvPaledgdglklteSlAIar 72
                t+ ++++ g+ +++r++la ++++y +vr+d+++  + +    w  ++p +       + +P+    dg  l++S+AI+r
  MMETSP0890-20130614|6636_1 17 TYVYWDICGLQAPIRLALALANADYVEVRLDPGDPNTPDykGAWFAKKPALskkgcpfPDLPYAMMTDGSYLVQSNAILR 96
                788****************************95554422445566777777***********988889**********98 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-07    0.0004      34      95 .]     146     211 ..     133     211 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT....HTT-HHHHHHHHHHHHSH CS
  PF00043.20  34 levlealeeelsgkkylvGdkltlADialfpalewlqrldgnfl....eeefPklkawlkriaarp 95 
                   +l  + + l +k + +Gd++++AD+ +++++  lq +  +      ++++P+l  + +r+++ p
  MMETSP0890-20130614|6636_1 146 PQQLHDWAKFLGDKPFMAGDSVSIADCKVYEIFRKLQIIANEHAlpdlFAATPQLATYIQRFESIP 211
                 555555666677**********************777776665556889************99876 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06    0.0099      11      69 .]     145     206 ..     113     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
                 TT-THGGG------SS.-------HHHHHHHHHHHHHHHHH---...---TT----HHHHHH CS
   PF13410.1  11 lraaLdaleahLadgpfllGdrpslaDialapflvrldaagpgl...direayPnlrawler 69 
                 l + L  + + L+d+pf++Gd  s+aD+ ++  ++ l  +  ++   d+ +a P l+++++r
  MMETSP0890-20130614|6636_1 145 LPQQLHDWAKFLGDKPFMAGDSVSIADCKVYEIFRKLQIIANEHalpDLFAATPQLATYIQR 206
                 55667778999*****************9999888887774444345666888888888887 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.4e-05      0.22      13      67 ..      30      98 ..      19     104 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.4e-05
                HHHHHHH----EEE----TTTT............HHHHHHH-.TT--SSEEE.----EEESHHHHHHHH CS
   PF13417.1 13 vrlaLeekglpyelvevtpgkk............rpellaln.pkgkvPvLe.ddgevltdSlvIieyL 67
                +rlaL +++ +y +v ++pg++            +p+l+++  p   +P    +dg+ l +S +I++ +
  MMETSP0890-20130614|6636_1 30 IRLALALANADYVEVRLDPGDPntpdykgawfakKPALSKKGcPFPDLPYAMmTDGSYLVQSNAILRAI 98
                79****************997653333333333344555555788899987659***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 1005.61
//
Query:       MMETSP0890-20130614|6635_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-93  311.4   0.0    7.3e-93  311.1   0.0    1.1  1  PF00266.14 Aminotransferase class-V
    4.1e-09   35.8   0.0    5.7e-09   35.4   0.0    1.2  1  PF01212.16 Beta-eliminating lyase
    0.00032   19.1   0.0    0.00047   18.5   0.0    1.2  1  PF00282.14 Pyridoxal-dependent decarboxylase conserved domain
     0.0076   15.2   0.0      0.012   14.5   0.0    1.2  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.1   0.0   2.1e-96   7.3e-93       2     369 ..      45     406 ..      44     407 .. 0.95

  Alignments for each domain:
  == domain 1    score: 311.1 bits;  conditional E-value: 2.1e-96
                 B--TTTS----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT-S-GGGEE---------HHHHHH----.-----EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH--.TTEEEEEEESB-S----B--HHHHHHHHHH---EEEEE---STTTS---HHHHT-SEEE--------------EEE-HHHHHH----------EEE--S---EE--TTGGG---------------HHHHH.HH---HHHHHHHHHHHHHHHHH.HTTSTT-EEE--...TT----EEEE-----TTT---HHHH---B-B---TT-....HHHHHHTT-S.......--EEE---TT--HHHHH CS
  PF00266.14   2 yLdsaAttqkpqeVldalqeyytdyngnvhrsvhtlgkeatealeearekvaelinaeseeeiiFtsgttealnlvalslars.lkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldelekllt.pktklvaithvsnvtGvvqpveeiaklakeagalvvvDaaqavghipidvkklgvDflafSgHKllgPtGiGvlyvrrellekleplklggemveevsleettfaeapskfeaGTpniagiiglgaaleyl.eeigleaiekhekelaeylyer.LsalpgvellgpakaerrasivsfafkgveaedvatlLdergIavrsGhhca....qplmkrlale.......gtlRaSlyiynteeevd 369
                 yLd +At++++++Vlda+++y+  + gn+h+ +h++g+e  +a+eeare+v  li+a+s +eiiFtsg+te++n++++++ar   +++++++++++eh++ l  +++l+ ++g++v+++pvd+ g + l++l+k+++  +t+lv+i++v+n++G+ qp+++i k+a++aga++++Daaq+vg++p+dv+++g+D+l++SgHK++gP+GiG+lyvrr+   +lep+  gg+       +e++       +++GT ++a  +glgaa+++  +e++++  + h  +l+++l++r ++++p+v l+g  +++r +++v+++f++ve+e + + L++  Iav+sG++c+    +p+++++a+          +R+++++ +t +e+d
  MMETSP0890-20130614|6635_1  45 YLDVQATSMIDPRVLDAMMPYMLGSFGNAHSRTHSYGWESEAAVEEAREEVGSLIGASS-KEIIFTSGATESNNIAVKGVARFqKERKRHVITSQTEHKCVLDSCRKLE-TEGFDVTYLPVDSTGLISLEALKKAIRpGETSLVSIMAVNNEIGTTQPLKDISKIAHDAGAYFHTDAAQMVGKMPLDVHDIGIDLLSISGHKIYGPKGIGALYVRRRPRVRLEPVFSGGG-------QERG-------LRSGTLPTALCVGLGAAARLSgREMEYD--HLHISNLSKRLLSRvMDEIPQVILNG-HPTQRYPGCVNLSFAYVEGESLLMSLKN--IAVSSGSACTsaslEPSYVLRAIGvsedlahTSIRFGIGRFTTPQEID 406
                 9*********************************************************9.**********************99999*********************9.99*************************779******************************************************************************************.......9999.......99*****************996666666..577777777766652778******99.799******************9999987..**********99**999999999999****99**************98 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.7e-12   5.7e-09      23     210 ..      78     259 ..      57     337 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.7e-12
                 TT....H..HHHHHHHHHHHH------..EE-----HHHHHHHHHHHH....HT-EEEEETT-H.HHHSS---HHHHH--EEEEE--TT.S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE-E-HHHHHHHHT--HHHHHTT-SEEEE-S---------.-EEE--HH CS
  PF01212.16  23 eaYgedk..tvarledavaellgkeaa..lfvpsGtaAnqialsallq....reeevvvtepsh.ihfdetgaikelggvklrtlknkeagkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlDgARlaeaakslgeiakeiasyaDsvtislkKdlganvG.gilafrdk 210
                  +Yg ++   v+++ ++v  l+g++ +  +f+   t +n+ia++ +++    r++ v+ +++ h    d ++ + e +g  ++ l+ ++ g ++le+l+++i++  +   +++l+s+   nn+    + +++ l+ i++ia++ g  +h D+A ++    +++ ++++i  ++D ++is+ K +  + G g+l +r++
  MMETSP0890-20130614|6635_1  78 HSYGWESeaAVEEAREEVGSLIGASSKeiIFTSGATESNNIAVKGVARfqkeRKRHVITSQTEHkCVLDSCRKL-ETEGFDVTYLPVDSTGLISLEALKKAIRP--G---ETSLVSIMAVNNE----IGTTQPLKDISKIAHDAGAYFHTDAAQMVG---KMPLDVHDI--GIDLLSISGHK-IYGPKGiGALYVRRR 259
                 55554332267778888888999886543677778********8777555668889999999772567888998.9****************************..5...69*****888886....5577889999***************97654...334445544..56777777777.444555555555555 PP

>> PF00282.14  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.4e-07   0.00047     139     233 ..     129     221 ..      84     263 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.4e-07
                 -S-EEEEEETTS-CHHHHHHHHTT-E...EEEE--B-TTB--S-HHHHHHHHHHCT..EEEEEEEE---TTT-----CCCHHHHHHCT--EEEEE-S- CS
  PF00282.14 139 ldklvlytsdqahssvekaakiagve...lrlipldenfkllgkdlekaieedkekGliplfvvatlGttvsgafddlkelgdicekydlwlHvDAAy 233
                   k  + ts+  h +v   ++ ++ e   + ++p+d+ + +  ++l+kai   +     ++ v+  +Gtt+     +lk +++i++  +   H DAA 
  MMETSP0890-20130614|6635_1 129 ERKRHVITSQTEHKCVLDSCRKLETEgfdVTYLPVDSTGLISLEALKKAIRPGETSLVSIMAVNNEIGTTQ-----PLKDISKIAHDAGAYFHTDAAQ 221
                 3577789*********9999988877777**********************99999667889999999996.....89******************95 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.5e-06     0.012      38     152 ..      99     224 ..      75     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.5e-06
  PF01041.12  38 lg..vkhavavssGtaAlllaLra...lgigpGdeVIvpsltfvAtanavlql...GakpvfvDvdpetlnldpaaieaaitprt...kaIlpVhl.yGqpadmdairaiaaehglkvieDaAqAlG 152
                 +g  +k  + +s +t+++ +a +    ++ ++   VI+ +      + +  +l   G ++ +  vd  t  ++ +a+++ai p       I+ V+   G    ++ i +ia++ g +   DaAq +G
  MMETSP0890-20130614|6635_1  99 IGasSKEIIFTSGATESNNIAVKGvarFQKERKRHVITSQTEHKCVLDSCRKLeteGFDVTYLPVD-STGLISLEALKKAIRPGEtslVSIMAVNNeIGTTQPLKDISKIAHDAGAYFHTDAAQMVG 224
                 5544566777888899999999887675656899999999888777666655533389999999*9.9*************99665777899997538**************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.77
# Mc/sec: 1400.47
//
Query:       MMETSP0890-20130614|6634_1  [L=943]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-23   82.2   0.5    1.8e-13   50.4   0.1    2.8  3  PF12796.2  Ankyrin repeats (3 copies)
    9.9e-18   63.5   1.2    9.9e-18   63.5   0.8    2.3  2  PF00226.26 DnaJ domain
      9e-14   50.3   1.4    0.00036   20.0   0.0    4.3  4  PF00023.25 Ankyrin repeat
    5.1e-12   44.6   0.5     0.0021   18.0   0.1    4.6  4  PF13606.1  Ankyrin repeat
    8.1e-12   44.8   1.6     0.0014   18.7   0.1    3.8  3  PF13857.1  Ankyrin repeats (many copies)
    1.7e-08   34.6   0.2    1.7e-05   25.0   0.1    3.5  4  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.06   12.6   9.2      0.052   12.8   0.6    2.8  2  PF13870.1  Domain of unknown function (DUF4201)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.5   9.7e+02      57      80 ..     180     203 ..     160     211 .. 0.79
   2 !   39.1   0.0   3.1e-13     6e-10       5      81 ..     190     279 ..     186     285 .. 0.81
   3 !   50.4   0.1   9.4e-17   1.8e-13       1      88 [.     225     329 ..     225     330 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.5
   PF12796.2  57 kegntpLhlAvrnghlelvklLle 80 
                 k+++++L   + ng+ e+v+  l+
  MMETSP0890-20130614|6634_1 180 KDNMYCLDTLAANGKEEIVREFLS 203
                 577888888999999999987775 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 3.1e-13
   PF12796.2   5 aengnlelvklLle..kgadvdl..get.......pLhlAaeagnleivklLleagadvnakd...kegntpLhlAvrnghlelvklLlek 81 
                 a ng+ e+v+ +l+   g    +  + +       +L  Aa +g++ei+klL+ +ga   +      +g+t+Lh+A+ +g +e+++ L+  
  MMETSP0890-20130614|6634_1 190 AANGKEEIVREFLSgvTGERASRirK-RyykilgrALLNAANSGQVEICKLLIRRGALRSTPFvrgTNGYTALHYAAAAGAVEIIEALCAT 279
                 77889999998887666654444432.25778888*********************98766667779*********************976 PP

  == domain 3    score: 50.4 bits;  conditional E-value: 9.4e-17
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl.......getpLhlAaeagnleivklLle.........agadvnakd......kegntpLhlAvrnghlelvklLlekgadvnlr 88 
                 L +Aa++g++e++klL+  ga   +       g t+Lh+Aa+ag +ei+++L++         + +     d       +g+t+L++A++ ++  +++ Ll  gad +lr
  MMETSP0890-20130614|6634_1 225 LLNAANSGQVEICKLLIRRGALRSTpfvrgtnGYTALHYAAAAGAVEIIEALCAteayapqslQTN-----DpldlgdCQGKTALMIAAQEQQWSAARTLLRLGADAELR 329
                 678*****************866666778777888*******************555544444222.....244555699**************************9887 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.9   3.6e+03      15      24 ..     211     220 ..     207     222 .. 0.74
   2 !   63.5   0.8   5.1e-21   9.9e-18       2      64 .]     506     582 ..     505     582 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.9
                 HHHHHHHHHH CS
  PF00226.26  15 eeIkkaYrkl 24 
                 + I+k+Y+k 
  MMETSP0890-20130614|6634_1 211 SRIRKRYYKI 220
                 6788888874 PP

  == domain 2    score: 63.5 bits;  conditional E-value: 5.1e-21
                 HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC..............HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde..............eeaeekfkeineAyevLsdpekraeyd 64 
                 +Y+iLgv++ a+d+e+++aY++ ++++HPD+  +                ++ae++f++ineA e+L d+ kra yd
  MMETSP0890-20130614|6634_1 506 HYAILGVSTRADDAELRRAYKRASMRWHPDRRRNTItdkekqnedpsddaARAERQFRRINEAKEILLDSYKRAVYD 582
                 8******************************8888899************99************************8 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.42   8.2e+02       3      23 ..     183     203 ..     181     206 .. 0.82
   2 !    9.6   0.1   0.00036      0.71       6      26 ..     225     245 ..     224     247 .. 0.91
   3 !   20.0   0.0   1.8e-07   0.00036       1      23 [.     256     278 ..     256     290 .. 0.87
   4 !   15.8   0.0   4.1e-06     0.008       2      32 ..     300     330 ..     299     331 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.42
                 CBHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrgnlevvklLls 23 
                 + +L   a +g  e+v+ +ls
  MMETSP0890-20130614|6634_1 183 MYCLDTLAANGKEEIVREFLS 203
                 566777799*********997 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00036
                 HHHHHHTTHHHHHHHHHHTTS CS
  PF00023.25   6 LHlAalrgnlevvklLlsqGA 26 
                 L  Aa +g++e++klL+ +GA
  MMETSP0890-20130614|6634_1 225 LLNAANSGQVEICKLLIRRGA 245
                 6669****************9 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.8e-07
                 TSCBHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLls 23 
                 +G+T+LH+Aa  g +e+++ L  
  MMETSP0890-20130614|6634_1 256 NGYTALHYAAAAGAVEIIEALCA 278
                 7*******************975 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 4.1e-06
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G T+L++Aa+  + + ++ Ll  GAd  +++
  MMETSP0890-20130614|6634_1 300 GKTALMIAAQEQQWSAARTLLRLGADAELRT 330
                 99************************87776 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.2   3.8e+02       5      23 ..     185     203 ..     181     207 .. 0.86
   2 !    6.8   0.0    0.0042       8.2       5      26 ..     224     245 ..     222     247 .. 0.92
   3 !   18.0   0.1   1.1e-06    0.0021       1      22 [.     256     277 ..     256     282 .. 0.94
   4 !   12.3   0.0   7.4e-05      0.14       2      27 ..     300     325 ..     299     328 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.2
   PF13606.1   5 pLhlAasngrielveaLle 23 
                 +L++ a ng+ e+v++ l+
  MMETSP0890-20130614|6634_1 185 CLDTLAANGKEEIVREFLS 203
                 7999**********99885 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0042
   PF13606.1   5 pLhlAasngrielveaLlenga 26 
                 +L  Aa +g++e++++L+++ga
  MMETSP0890-20130614|6634_1 224 ALLNAANSGQVEICKLLIRRGA 245
                 67889***************97 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 1.1e-06
   PF13606.1   1 nGnTpLhlAasngrielveaLl 22 
                 nG+T+Lh+Aa  g +e++eaL+
  MMETSP0890-20130614|6634_1 256 NGYTALHYAAAAGAVEIIEALC 277
                 8********************8 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 7.4e-05
   PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                 G T+L++Aa+ +++++++ Ll+ gad
  MMETSP0890-20130614|6634_1 300 GKTALMIAAQEQQWSAARTLLRLGAD 325
                 78***********************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0069        13      19      41 ..     224     246 ..     221     250 .. 0.88
   2 !   18.7   0.1   7.1e-07    0.0014      12      36 ..     253     277 ..     248     286 .. 0.87
   3 !   16.9   0.0   2.5e-06    0.0049       7      46 ..     291     330 ..     286     334 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0069
   PF13857.1  19 pLhlAakggalevvrlLlapgad 41 
                 +L +Aa+ g++e+++lL+++ga 
  MMETSP0890-20130614|6634_1 224 ALLNAANSGQVEICKLLIRRGAL 246
                 7889**************88875 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 7.1e-07
   PF13857.1  12 tdeggntpLhlAakggalevvrlLl 36 
                 + ++g+t+Lh+Aa +ga+e+++ L+
  MMETSP0890-20130614|6634_1 253 RGTNGYTALHYAAAAGAVEIIEALC 277
                 6789********************9 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 2.5e-06
   PF13857.1   7 advnatdeggntpLhlAakggalevvrlLlapgadlnlrd 46 
                 + ++  d +g t+L++Aa  ++++++r Ll+ gad+ lr+
  MMETSP0890-20130614|6634_1 291 DPLDLGDCQGKTALMIAAQEQQWSAARTLLRLGADAELRT 330
                 44556688899*************************9997 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         7   1.4e+04       5      18 ..     186     199 ..     181     202 .. 0.51
   2 !   25.0   0.1   8.9e-09   1.7e-05       3      53 ..     223     276 ..     222     277 .. 0.91
   3 ?    5.2   0.0     0.014        28      26      54 .]     291     320 ..     287     320 .. 0.82
   4 ?   -1.7   0.0       2.2   4.3e+03      32      47 ..     633     648 ..     627     650 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 7
   PF13637.1   5 Lhyaaisgrlelvk 18 
                 L+ +a+ g +e+v+
  MMETSP0890-20130614|6634_1 186 LDTLAANGKEEIVR 199
                 44445555555554 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 8.9e-09
   PF13637.1   3 taLhyaaisgrlelvklLlekgid...inrtdesGntaLhiAalrgnieilklL 53 
                 +aL +aa+sg +e++klL+ +g+    +  +  +G taLh+Aa +g +ei++ L
  MMETSP0890-20130614|6634_1 223 RALLNAANSGQVEICKLLIRRGALrstPFVRGTNGYTALHYAAAAGAVEIIEAL 276
                 57889**************778777779999999*****************998 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.014
   PF13637.1  26 dinrt.desGntaLhiAalrgnieilklLl 54 
                 d+  + d +G taL iAa+ +++++++ Ll
  MMETSP0890-20130614|6634_1 291 DPLDLgDCQGKTALMIAAQEQQWSAARTLL 320
                 5555645579***************99887 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 2.2
   PF13637.1  32 esGntaLhiAalrgni 47 
                 ++G t + +A+ + n+
  MMETSP0890-20130614|6634_1 633 NYGLTSVRYAVPWKNK 648
                 78********987775 PP

>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.4     0.028        55     108     135 ..      77     104 ..      57     165 .. 0.63
   2 ?   12.8   0.6   2.7e-05     0.052      98     141 ..     727     770 ..     724     771 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.028
   PF13870.1 108 aklrkelykvklerdklrkenkklrqqg 135
                     + l+++k e+++lr++ ++ r q 
  MMETSP0890-20130614|6634_1  77 SARVEALHEMKRENARLRAQLEDARDQA 104
                 2222334444444444444444444333 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.7e-05
   PF13870.1  98 kelkekeeklaklrkelykvklerdklrkenkklrqqggllrkP 141
                 ++l++ e++l++ r+el ++k+ r+k+ +e ++l ++ g +++P
  MMETSP0890-20130614|6634_1 727 SRLRRYEDELKRQREELDRAKEVRQKVAREREQLAKSRGTFFAP 770
                 689999*********************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1073  (0.0784816); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.25u 0.60s 00:00:01.85 Elapsed: 00:00:01.39
# Mc/sec: 1625.73
//
Query:       MMETSP0890-20130614|6639_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-53  177.8   0.2    7.2e-53  177.6   0.1    1.0  1  PF01090.14 Ribosomal protein S19e
  ------ inclusion threshold ------
      0.051   12.0   0.0      0.068   11.6   0.0    1.1  1  PF09660.5  Protein of unknown function (DUF2397)


Domain annotation for each model (and alignments):
>> PF01090.14  Ribosomal protein S19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   0.1   1.1e-56   7.2e-53       1     137 [.      11     147 ..      11     150 .. 0.98

  Alignments for each domain:
  == domain 1    score: 177.6 bits;  conditional E-value: 1.1e-56
  PF01090.14   1 vtvkdVpadelikalaekLkkegkikvpewadlvKtgvakelaPededwwyvRaAsilRkvylrgpvGverlrkvYggkkrrgvkpekfvkgsgsvirkalqqLekaglvekdekgGrrltkkGrsllDkiAaevlk 137
                 +tv+dV++ ++i+++a +Lk++++ ++p+w d+vKtgv+ke+aP+ edw+++RaAsi+Rkvyl+ ++G+++lrk Ygg+ rrg++ + f+k+s  +ir +lqqLe+++++e++++gGrr+t+ G+++lD+iA +v++
  MMETSP0890-20130614|6639_1  11 ITVRDVKPATFIEQYAIHLKNSDRFEIPKWHDIVKTGVHKEQAPTSEDWYFIRAASIARKVYLKPGIGIGALRKWYGGQYRRGSRAKVFQKASAGIIRSILQQLEETKVLEQTPTGGRRITRVGQQDLDRIAGQVAR 147
                 69************************************************************************************************************************************986 PP

>> PF09660.5  Protein of unknown function (DUF2397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.9e-06     0.068     258     292 ..      81     115 ..      77     131 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.9e-06
   PF09660.5 258 gLraWFvgadgkpsqaelLreaareairkllrvva 292
                 +Lr+W+ g+  + s+a+++++a++ +ir++l+ ++
  MMETSP0890-20130614|6639_1  81 ALRKWYGGQYRRGSRAKVFQKASAGIIRSILQQLE 115
                 79*****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 639.03
//
Query:       MMETSP0890-20130614|6643_1  [L=1155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-24   84.2  18.2    8.1e-09   34.9   0.1    6.7  6  PF00400.27 WD domain, G-beta repeat
      1e-13   51.5   1.0    1.5e-13   51.0   0.0    1.8  2  PF12931.2  Sec23-binding domain of Sec16
    4.4e-09   35.9   2.4    9.6e-09   34.8   1.6    1.6  1  PF00397.21 WW domain
  ------ inclusion threshold ------
       0.17   11.6   0.1       0.17   11.6   0.1    2.0  2  PF02840.10 Prp18 domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.064   2.2e+02      17      39 .]      75     103 ..      69     103 .. 0.81
   2 !   17.0   0.1     1e-06    0.0034      10      36 ..     129     158 ..     125     159 .. 0.94
   3 !   17.7   0.1   6.4e-07    0.0022      10      39 .]     183     213 ..     180     213 .. 0.98
   4 !   11.4   0.1     6e-05      0.21      13      31 ..     230     249 ..     225     262 .. 0.86
   5 !   34.9   0.1   2.4e-12   8.1e-09       3      39 .]     270     307 ..     268     307 .. 0.97
   6 !    9.4   0.0   0.00027      0.91      16      38 ..     398     421 ..     397     422 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.064
                 EEEESS......STEEEEEETTSEEEEEE CS
  PF00400.27  17 vafspd......gpllasgSrDgtirlWd 39 
                 + +s        + l+a g +Dg++ +Wd
  MMETSP0890-20130614|6643_1  75 LTWSAQssdtlpYGLIAGGMSDGNVDIWD 103
                 56666666677788999999********9 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1e-06
                 SSSSEEEEEEESS...STEEEEEETTSEEE CS
  PF00400.27  10 HtspVtcvafspd...gpllasgSrDgtir 36 
                 H++ V+++ f+p+    +l+asg++D+ + 
  MMETSP0890-20130614|6643_1 129 HKGVVNSIQFNPHtssAHLIASGGADCEVF 158
                 99*************************886 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 6.4e-07
                 SSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  10 HtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 Ht+ Vt va++   +++la+g ++g + +Wd
  MMETSP0890-20130614|6643_1 183 HTAEVTTVAWNTQvSHILATGAANGMCVVWD 213
                 ******************************9 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 6e-05
                 SEEEEEEESS.STEEEEEET CS
  PF00400.27  13 pVtcvafspd.gpllasgSr 31 
                 +V++v+++p+ g +la++S 
  MMETSP0890-20130614|6643_1 230 SVSDVCWNPNeGLHLATCSG 249
                 89*****************4 PP

  == domain 5    score: 34.9 bits;  conditional E-value: 2.4e-12
                 EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 ++ tl+gHt ++ +++++pd ++ll+s++rD+   +Wd
  MMETSP0890-20130614|6643_1 270 PLGTLSGHTQGILSMSWCPDdPSLLVSCGRDNRTLIWD 307
                 689**********************************9 PP

  == domain 6    score: 9.4 bits;  conditional E-value: 0.00027
                 EEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27  16 cvafspd.gpllasgSrDgtirlW 38 
                  va+sp+ + lla++S D+++  +
  MMETSP0890-20130614|6643_1 398 QVAWSPTaRALLATSSFDRKVQFF 421
                 69******************9876 PP

>> PF12931.2  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.8   6.3e+03      65     115 ..     552     603 ..     541     606 .. 0.51
   2 !   51.0   0.0   4.4e-17   1.5e-13       2     221 ..     616     826 ..     615     833 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.8
   PF12931.2  65 avlyevfagnveesidelvpksavsnleeesaakn.WretvalilsNrssdd 115
                 a++ ++ + + e++++  +++  v++++++   ++  + +v+li +N +++d
  MMETSP0890-20130614|6643_1 552 ATTNNLRTASAEDVFSMSYKNDNVTATTTNTHDDTdTNTVVSLINNNIPKED 603
                 5555555555555555444444444444343333325555666666655555 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 4.4e-17
   PF12931.2   2 ilklLltGerekAvelavdqrlWahAllisstlgkekwkqVvqefireevkvgknskkltelLavlyevfagnveesidelvpksavsnleeesaaknWretvalilsNrssddsqalla.lGklLl.sygrveaahicflla.rvplspkpvlddseakfellgl..tslndlesilltEvYEfalsllkaspkf.g...iphLlayKlvhAavLaeyGlkseaqkYc 221
                 +++ Ll+G+ e Av+ +++  + a All++s+ g e w+q+  ++ +   k gk       +L v+  ++     + + elv+ks           ++Wret+a+++   +sd+ +al+  lG+ L  +++   aa++c++ a ++p + + ++++  ++ ++l    +sl++ +++ l+E  E ++  +   p+f g   +p+L  +   +A++La++G+ + a kYc
  MMETSP0890-20130614|6643_1 616 VKRSLLVGDFEAAVDKCLETNQLADALLVASCGGAELWEQTRMRYFEIATKNGKR-----PFLDVVSAII----TNELAELVAKS---------ELSKWRETLAVLATYGKSDEFAALCEqLGQRLEiEAQDNFAASLCYMCAvNLPKTLEFWIKELFKQRSSLKNdkSSLKQVDTLSLQELIERITVFTGRAPNFgGekdNPALGKVLDTYATILANQGELNVAAKYC 826
                 6789******************************************999777766.....4455555555....55678999983.........4678******99999999888888767***9963678899*********5555566668888777777777788999******************999999962556999*99999******************* PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   1.6   2.8e-12   9.6e-09       1      31 []     903     933 ..     903     933 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 2.8e-12
                 ---SEEE.E.E-.---EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWeersddd.dGrvYYyNheTgetqWekP 31 
                 lp +W+++ d + ++r+YY N++Tg+tqW++P
  MMETSP0890-20130614|6643_1 903 LPTPWVAVLD-QtSNRTYYANPQTGQTQWDPP 933
                 7889**99*5.779*****************9 PP

>> PF02840.10  Prp18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   0.8         4   1.4e+04      19      41 ..     943     965 ..     938     969 .. 0.58
   2 ?   11.6   0.1   4.8e-05      0.17      31      92 ..    1096    1155 .]    1082    1155 .] 0.85

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 4
  PF02840.10  19 kkeeekksaegkkaeailkqtkk 41 
                  +++ ++s++++++++ ++q ++
  MMETSP0890-20130614|6643_1 943 YQQQPATSYQQEQQTTSFQQQQT 965
                 34444566677777777766654 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.8e-05
  PF02840.10   31 kaeailkqtkkslkpLlkklrkkkleedileslaeivkllqereyvkandaYlkLaiGnaaW 92  
                  ++++++++  k+l+ L +k+ ++++e ++++ l++ v++l + +++ a+++ l L   n aW
  MMETSP0890-20130614|6643_1 1096 MERKQIAEIDKALDRLAEKMANNDVEAEVVDRLTSFVQALLRSDFHAASNEQLVL--VNSAW 1155
                  5677889999**************************************9986554..45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       839  (0.0613663); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.53u 0.53s 00:00:02.06 Elapsed: 00:00:01.44
# Mc/sec: 1922.08
//
Query:       MMETSP0890-20130614|6646_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-45  154.4   3.2    2.8e-45  154.2   2.2    1.0  1  PF04142.10 Nucleotide-sugar transporter


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   2.2     2e-49   2.8e-45      87     238 .]       2     155 ..       1     155 [. 0.93

  Alignments for each domain:
  == domain 1    score: 154.2 bits;  conditional E-value: 2e-49
  PF04142.10  87 vqlkqkes..eaekkreaeenivlGlvavlvacllsgfAgvYfEKiLKesnesiwirNiqlallgilfalltlllkdgekikekgffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgallV 238
                 vq++q +   ++++  e ++n  lGl++      +sgf gvYfE +LK+s  s+wirNi+la +++l++l++++ +d ++++ +gf+ Gy  + w+ v +qa gGl++a v+kyaDNilkafats++iv+++++s + +df+ s lf++ga+ V
  MMETSP0890-20130614|6646_1   2 VQISQMHPstKESHGDEGTKNLALGLAVTALISTISGFSGVYFEMVLKNSPISLWIRNIHLAAFSTLVGLIAVYSTDSDHVARCGFLGGYGPAAWTYVCVQAGGGLLIAAVIKYADNILKAFATSVSIVVVALVSAIFYDFQTSQLFFIGATGV 155
                 5555554432345556679999*********************************************************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 675.34
//
Query:       MMETSP0890-20130614|6650_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.85
# Mc/sec: 2052.41
//
Query:       MMETSP0890-20130614|6655_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-14   53.0   0.2    1.2e-13   51.1   0.3    1.7  2  PF08547.7 Complex I intermediate-associated protein 30 (CIA30)
  ------ inclusion threshold ------
      0.019   14.5   1.0       0.23   11.0   0.5    2.3  2  PF03425.8 Carbohydrate binding domain (family 11)


Domain annotation for each model (and alignments):
>> PF08547.7  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.3   1.7e-17   1.2e-13      10     122 ..      29     149 ..      22     161 .. 0.87
   2 ?   -1.3   0.0      0.23   1.6e+03     133     157 .]     181     204 ..     171     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 1.7e-17
   PF08547.7  10 dkwtavnDkvmGGlSksslelskedktavFsGnlsle...nrgGFasvrtkkrkesldlseyeglelrvk...GdgrtYklnlktesk.......qsglsyqadfetkkgewqtvkipfsdfvptf 122
                 + wt +nD vmGG+S+++ ++  + + + F+G++      +  GF++      +   ++s+y g++l+v+    d + +k++++             + sy+++f ++++ w+tv+++f++f   +
  MMETSP0890-20130614|6655_1  29 SLWTEMNDPVMGGSSSGNWSII-NGNIGLFQGTVTNVsflSAPGFCQTSA---NIFANASAYGGIALKVRsstPDYKGFKFAFSAIGAprhhgghELQGSYKTSFAATSD-WTTVTLNFNQFSSDW 149
                 45*******************8.55********9999999*******999...999**************54446677788887775588899988899*******8655.***********8765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.23
   PF08547.7 133 ldlskiksiglllsdkqegpfeLei 157
                   l++i++++l   +  eg f Lei
  MMETSP0890-20130614|6655_1 181 TRLARIDALSLWAEGT-EGAFHLEI 204
                 4578889999888776.99999998 PP

>> PF03425.8  Carbohydrate binding domain (family 11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.027   1.9e+02      97     116 ..      16      35 ..       5      39 .. 0.84
   2 ?   11.0   0.5   3.4e-05      0.23     102     132 ..     125     155 ..      44     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.027
   PF03425.8  97 gdyelwlasvkasktWkqie 116
                  +++l la++++++ W++ +
  MMETSP0890-20130614|6655_1  16 RANDLVLATFGDDSLWTEMN 35 
                 489**************976 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.4e-05
   PF03425.8 102 wlasvkasktWkqieipfsdlrqrtdyqpeg 132
                 + +s+ a ++W++++++f+++ +  ++  ++
  MMETSP0890-20130614|6655_1 125 YKTSFAATSDWTTVTLNFNQFSSDWSDYTGD 155
                 67899****************8865555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.53
# Mc/sec: 972.11
//
Query:       MMETSP0890-20130614|6660_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-07   28.2   0.0    1.1e-06   27.7   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.9e-11   1.1e-06      30     197 ..     254     431 ..     230     485 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 7.9e-11
   PF07727.9  30 geierykARlVakGftqkegidyeetfspvvklesirlll..alaaekkleleqlDvktaFLngele....eevYvkqpeGfedkkkenkvckLkkslYgLkqapraWyeklsevllklgfkkse.adkclfvkkke..eeliivllYVDD..lliagsskelieelkeeLkkefemkd 197
                    ++ k R V +G t +egid+     p + ++   ++l   +a +++ +  +lDv+ aFL   ++    ee  ++  +G+   + ++ +  L   lYg  +apr   +    vl + g ++ + +++ + + k +  +e+++v+ +VDD    i  ++++   e+ + ++++f +++
  MMETSP0890-20130614|6660_1 254 DVFQKVKVRGVMNGKTEREGIDFMPWQVPTTMVSRRAMILthMVALRRGKKPYRLDVDEAFLRTIIDaeddEEYLIDALPGYIGLEPDEIMAAL-AKLYGSHKAPRLFQKDYGGVLDSVGLRSIDfSEPEVRMDKPGniDESMLVSHHVDDseWNIPDKREKDYLEMRRIIERRFPLSE 431
                 35799*******************777776665555444411577889999***********9877522226688999*****99755555555.55*********************9999876245556665544114558888888883335556666666666667777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.41s 00:00:01.25 Elapsed: 00:00:00.87
# Mc/sec: 1479.13
//
Query:       MMETSP0890-20130614|6670_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   33.9   0.3    4.8e-08   32.7   0.2    1.7  1  PF04564.10 U-box domain
    1.7e-05   24.1   0.0      4e-05   23.0   0.0    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    6.1e-05   22.3   1.0    0.00038   19.7   0.4    2.2  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2     1e-11   4.8e-08       2      46 ..      49      95 ..      48     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1e-11
                -GGGB-TTT-SB-SSEEE-TTT..-EEEHHHHHHHHTT.SSB-TTT- CS
  PF04564.10  2 PdefldpitlelmkdPvilPsg..itvDrstiekhllsrdktdPftr 46
                P ef++pit+elm +P+ l     +t++r ++ek+l++  + dP+t+
  MMETSP0890-20130614|6670_1 49 PSEFVCPITRELMEEPITLFTEihQTYERDALEKFLHQYPCRDPITN 95
                89***************99887689********************95 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.8e-09     4e-05       7      45 ..      48      85 ..      42      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 8.8e-09
                XXXX-B-TTT-S.-SS....EEEES..---EEEHHHHHHHHH CS
   PF13445.1  7 fhsifaCpiske.qsteqnpPvvLp..CGhvisrealeklak 45
                  s f+Cpi++e + +    P++L      +++r+alek++ 
  MMETSP0890-20130614|6670_1 48 PPSEFVCPITRElMEE----PITLFteIHQTYERDALEKFLH 85
                579***********66....9975525789*********987 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.15   6.7e+02       6      19 ..      12      25 ..       9      31 .. 0.78
   2 !   19.7   0.4   8.4e-08   0.00038      11      48 ..      51      89 ..      46      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.15
                XXXXXX-B-TTT-S CS
   PF11789.3  6 eeerislkCpltlk 19
                ++e ++++C ++l 
  MMETSP0890-20130614|6670_1 12 DRELFEKVCKISLL 25
                57889999**9975 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 8.4e-08
                X-B-TTT-SB-SSEEEES----.EEEHHHHHHHHTTT-- CS
   PF11789.3 11 slkCpltlkpfkePvtskkCnH.vFEkeaIlkmlkrkkk 48
                + +Cp+t++ ++eP+t  +  H ++E++a++k+l++  +
  MMETSP0890-20130614|6670_1 51 EFVCPITRELMEEPITLFTEIHqTYERDALEKFLHQYPC 89
                678*************87554439**********77655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.85
# Mc/sec: 524.38
//
Query:       MMETSP0890-20130614|6672_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-10   40.8   0.1    2.9e-10   40.1   0.1    1.3  1  PF00106.20 short chain dehydrogenase
    7.7e-06   25.9   0.0    1.3e-05   25.1   0.0    1.5  1  PF13460.1  NADH(P)-binding
    0.00015   21.5   0.0    0.00029   20.5   0.0    1.4  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    0.00083   18.7   0.0     0.0013   18.0   0.0    1.3  1  PF01370.16 NAD dependent epimerase/dehydratase family
      0.005   16.4   0.1     0.0085   15.6   0.0    1.3  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   1.1e-13   2.9e-10       2     137 ..      86     217 ..      85     220 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.1e-13
                 EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHH..HH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH..HH.---EEEEEECH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeir..kalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld..ad.lgafvlfSSva 137
                 +v++TG+++g+Gl++  +L++  + ++vl++r+      ++l ++ +++  + ++v +D+++ +++aa  a+i+   + ++l+g+v nag+ +   l + t++ le  l+++  g +ll+  +    ++   ++v+ SS+a
  MMETSP0890-20130614|6672_1  86 WVCVTGATSGIGLEVGAELAKI-GYRVVLCGRD-----MSKL-KKAQENAPRSEIVCFDLESLESIAAGAAQIVdiCSPAQLKGLVLNAGAWP--ILLDETEDGLELGLQANYVGQALLADRLISasEPkNMSIVTLSSIA 217
                 799*******************.88*******9.....5555.33344667889999****************97778899***********9..566667***********88877777666664633689999999998 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.7e-09   1.3e-05       1      69 [.      87     156 ..      87     226 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 4.7e-09
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe.ssgvtivkkDlfdledlaealagvdvvvdafg 69 
                 + v+GAt+ +G ++ +el++ g+ v++  R  skl++ +++++  ++  fdle+l++  ag+  +vd  +
  MMETSP0890-20130614|6672_1  87 VCVTGATSGIGLEVGAELAKIGYRVVLCGRDMSKLKKaQENAPRSEIVCFDLESLESIAAGAAQIVDICS 156
                 579**********************************988888888888888888888889888888665 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.1e-07   0.00029       2     140 ..      92     219 ..      91     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
                 --S------HHHHHHHH---EEEE---HH---------------.-------TT-SGGHHHHHHHHHHH.-.--BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE---- CS
   PF13561.1   2 vaddnsigwaiakalaeaGaevilttwvpaklkkkvqelakelp.advvplDvtseedvselaekvkedlg.gkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylase 140
                 ++  ++ig+++   la+ G++v+l +++ +k    +++  ++ p +++v +D++s e+++  a+++ +     ++++lv  ++  p       ll+ +++gl+  l+++++  + l+  + +     ++ Siv+ls +a  
  MMETSP0890-20130614|6672_1  92 AT--SGIGLEVGAELAKIGYRVVLCGRDMSK----LKKAQENAPrSEIVCFDLESLESIAAGAAQIVDICSpAQLKGLVLNAGAWPI------LLDETEDGLELGLQANYVGQALLADRLIS-ASEPKNMSIVTLSSIAHA 219
                 44..9***********************887....566666666478********************997689*************8......9**************************97.788999*********965 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.8e-07    0.0013       1     162 [.      87     268 ..      87     274 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.8e-07
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH..TBEEEB--TT-HHHHHHHHHHHT.SE.........EEE--S---.HHHCCCSHHHHHHHH....T---HHHHHHHHHHTT.EEEEEEEGGG---B..SSS.....CB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EE CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri..rvelveldltdkdalerlfaeeqpda.........VihlAaesg.vdassedpadfiean....vegtlnlleaarkagvkrflfasSsevygkd..aeq.....pikEetplgplspYaaaKlageklveayaeeyglna 162
                 ++VtGat  iG  + ++l++ gy+v +l++r+ s+ ++++++  r e+v  dl + +++++  a+  +d          V++++a+    d++ +  +  ++an    + ++ +l+ a+  +++  ++ +sS +  g    + +     p   +  + p + Yaa Kl++  +++ +a  y+++a
  MMETSP0890-20130614|6672_1  87 VCVTGATSGIGLEVGAELAKIGYRV-VLCGRDMSKLKKAQENapRSEIVCFDLESLESIAAGAAQI-VDIcspaqlkglVLNAGAWPIlLDETEDGLELGLQANyvgqALLADRLISASEPKNM-SIVTLSSIAHAGYLnkDLEpilqdPAWRNREFDPNESYAAVKLMAIFYARILASFYKIKA 268
                 69**********************4.5555555554444444677778888888777777666666.333333345666888888888555555666667889944445556788888888888.999****555554423444223223455566688899*******9999888887777765 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.1e-06    0.0085       4     138 ..      88     217 ..      86     221 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.1e-06
                 EE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS...---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC...----EEEEEEEGG CS
   PF08659.5   4 LvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaee..pplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad...epldffvlfSSia 138
                  vtG++ g+Gle+  +La +   ++vl++r++++       l++ +++  + ++v  D+++ ++++a  +++ +     +l+G v  Ag++    l + t++ l+  l++   G   L   l +    +   +v++SSia
  MMETSP0890-20130614|6672_1  88 CVTGATSGIGLEVGAELA-KIGYRVVLCGRDMSK-------LKKAQENAPRSEIVCFDLESLESIAAGAAQIVDICspAQLKGLVLNAGAWP--ILLDETEDGLELGLQANYVGQALLADRLISasePKNMSIVTLSSIA 217
                 69****************.566789******433.......444445555666777777777777777777666554567888888888775..6777777888888888777777775433332322222345666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.67
# Mc/sec: 1530.81
//
Query:       MMETSP0890-20130614|6673_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.66    9.0  37.8      0.024   13.7  21.6    2.0  2  PF02463.14 RecF/RecN/SMC N terminal domain
        5.5    5.9  16.2       0.66    8.9   3.3    2.8  2  PF04582.7  Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3      0.63   4.3e+03      72     107 ..     232     253 ..     193     290 .. 0.55
   2 ?   13.7  21.6   3.6e-06     0.024      43     199 ..     485     914 ..     479     931 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.63
                 ----EEEEEEEEE----E.......EEEEEEEE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  72 akvksaeveitfdnedkelvieeeevsitrrvkrkg 107
                  ++k+ae+e t+              +i  +  ++ 
  MMETSP0890-20130614|6673_1 232 LQAKFAELEETL--------------KIAENQAQQA 253
                 233333333333..............3332222222 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3.6e-06
                 HHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT....................................................................................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH...HH-BTBEEEEE-S-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
  PF02463.14  43 AilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske....................................................................................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk...eksknaQfivislre 199
                  + F LG++++++   +++++ i +  +k+++++a+ e  +++++++ +i+++e   +r+ k+  +     ++  ++ + ++  l++a+ +++                                                                                                                                                                                                                                                                                    +LSgGe++ + la+l++i +    p+ ++De+d  +D+  ++   + l    ++ ++ Qfi i+ ++
  MMETSP0890-20130614|6673_1 485 PLGFALGDTQNTEQLVAETKNAIRQ--TKQQASEANREFELKKSQAN-EIKNSESAARRKFKQASD---AHDRALIQLNSMRADLAKAHTDSQteladvvledvdaaetelrnseeslhqaeasvaeatkalenhnndviapliavqnqhharnkelvqeeenvhceltdllalqkddeqkvmkekkkaekararlsefetaleeedkrleiitnkaidntqtflgkdytefphplskkfksaeaiqvkinalskqkdkalskkgieerdpqvakekvhraraaykekekgckqieqeskelkadaserwerlkeirrhicrfsdttfdeilqkkgssgtlkfshkeqtlglvfqkdnldastqienitSLSGGERSFTTLAMLLSIGSTIECPFRVMDEFDVFMDQVARKVAMKELVemaQHYESRQFIFITPQD 914
                 5779999988888778888888876..67777777777777888887.899999999998888877...334444455555555555555544555577788889**************************************************************************************************************************************************************************************************************************************************************************************************************99986655444254666779****99765 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.3   9.7e-05      0.66      52     155 ..     139     242 ..     119     307 .. 0.55
   2 ?    2.1   2.6     0.012        81      56     129 ..     558     636 ..     501     686 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.7e-05
   PF04582.7  52 ssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervkslesg 155
                 +++ ++l+ l+ +l+    s ++  ae+   +++ ++l+ + ds   e+  l + v ++ + + s ++   +   + s   s+ +a   ++++l+ +  +le +
  MMETSP0890-20130614|6673_1 139 TQLEEELTRLKNELDACHASTKKTAAEIAAARSDANKLKRARDSAEREVRALNTEVANNLKNVQSCKEANASRQQNQSQAGSKAAALEEQVANLQAKFAELEET 242
                 33333344444444444444444444444444444444444444444444443333333333333333333333333333333333333333333333333332 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.012
   PF04582.7  56 sklsdlsadlqdvtsslddvk.aelkelstevaalqssvdslsseladlselvsahda....alsslqtevdanstdis 129
                 s  +dl  +  d  + l+dv   +++  +te+++ ++s+++  +++a+ ++  ++h++     l  +q++ +a   ++ 
  MMETSP0890-20130614|6673_1 558 SMRADLAKAHTDSQTELADVVlEDVDAAETELRNSEESLHQAEASVAEATKALENHNNdviaPLIAVQNQHHARNKELV 636
                 4444444444444444444331234444444444455555555555554444444432100022334444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2139  (0.156451); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.92u 0.37s 00:00:03.29 Elapsed: 00:00:01.59
# Mc/sec: 1437.81
//
Query:       MMETSP0890-20130614|6679_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24   10.8   1.7       0.61    9.5   1.2    1.6  1  PF11131.3 Rap-phr extracellular signalling


Domain annotation for each model (and alignments):
>> PF11131.3  Rap-phr extracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.2   4.4e-05      0.61       6      22 ..     101     117 ..      98     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.4e-05
   PF11131.3   6 fviCLAaaaVFvateiA 22 
                 + iC A+a+VF a+ ++
  MMETSP0890-20130614|6679_1 101 AAICFAVATVFDAVDAG 117
                 569********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 878.66
//
Query:       MMETSP0890-20130614|6674_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-55  187.6   0.0    2.5e-55  187.2   0.0    1.1  1  PF00120.19 Glutamine synthetase, catalytic domain


Domain annotation for each model (and alignments):
>> PF00120.19  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   0.0   1.9e-59   2.5e-55      78     259 .]       1     185 [.       1     185 [. 0.96

  Alignments for each domain:
  == domain 1    score: 187.2 bits;  conditional E-value: 1.9e-59
                 HHH----EEE-EEEE----EEEEE--EEHHHHHHHHHHHHHHHHHHHHH---EEE--S-S---------BEEEEEE..----BSS-----...----HHHHHH----TTTHHHHHHHHS-STGGGGTS--......---SSSEEEEESS-TTEEEEE-----GGG--EEE-S------HHHHHHHHHH-- CS
  PF00120.19  78 lealgievetihhEvapgQfEidlkfadaleaaDnlvlfkyvvkevAekhGltatfmpKPlfgdnGsGmHvhlSlwdakdgknlfadedge..adlsetarqflgGllkhakaitaltaptvnsykRlvp......gteapvavawgarnRsalvRipaggkpkakrvEvRlpdpsanPYlalaallaag 259
                 +++lg+ v ++ hE + gQ+Eid++f +a e+aD+ vl++ ++ ++A+khG +at m+KP+++ +GsG+H+++S+ d + + n+f d+ ++   +ls++a++fl+G+lkh++aita+++ptvnsykRlv+       t++p+  ++g++nR+ ++Ripa      +r+E+R  dp  nPYl+ a +l+ag
  MMETSP0890-20130614|6674_1   1 MQELGWGVYSFDHEDGIGQVEIDFNFCEAGEMADRFVLLRSMANAIARKHGAYATWMAKPMAERTGSGAHLNISMHDFDSEANVFKDQADPkgLGLSKMAYSFLAGMLKHLPAITAVACPTVNSYKRLVKqgsmsgFTWSPIFQTYGDNNRTNAIRIPAP-----GRLELRAADPMYNPYLVSALILQAG 185
                 6899*********************88*************************************************985569***9998877789***********************************99999889**********************.....89********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.95
# Mc/sec: 696.20
//
Query:       MMETSP0890-20130614|6684_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.74
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|6686_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.82
# Mc/sec: 873.79
//
Query:       MMETSP0890-20130614|6681_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.93
# Mc/sec: 278.29
//
Query:       MMETSP0890-20130614|6685_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.1e-261  867.4  13.8   3.6e-261  867.2   9.6    1.0  1  PF00012.15 Hsp70 protein
    5.6e-14   51.3   1.1    6.1e-12   44.6   0.1    2.5  2  PF06723.8  MreB/Mbl protein
  ------ inclusion threshold ------
       0.01   15.5   9.8       0.14   11.9   0.4    4.9  3  PF14450.1  Cell division protein FtsA
      0.013   14.1   0.2      0.037   12.6   0.0    1.8  2  PF01031.15 Dynamin central region
      0.069   12.6   0.0       0.18   11.3   0.0    1.7  1  PF02782.11 FGGY family of carbohydrate kinases, C-terminal domain
        3.6    7.5   7.0        2.2    8.2   2.8    2.3  2  PF08702.5  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  867.2   9.6  1.6e-264  3.6e-261       1     601 [.      14     613 ..      14     614 .. 0.99

  Alignments for each domain:
  == domain 1    score: 867.2 bits;  conditional E-value: 1.6e-264
                 EEXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEET.TTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXT.EEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTXXXEEXSSXTTTTTTXXXTTCHHHCSSSSXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----..HHHHHHHHHHHHHCHHHHHHHHH CS
  PF00012.15   1 viGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkke.ngkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedg.kdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsksvnpDeavAiGaAvqaavlsgeeevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseglsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeeleged..keeieakleelekvvekivekly 601
                 v+GiDLGttns+va+meg++++vi+n+eg+rttPs+vaF+++  rlvG +Akrqavtnp+nt++++krliGrkf+d ev+k  k +pyk+vk++ n++a+v+++  ge  k++p+++++mvL+k+ketae++lg++v++a++tvPaYFnd+qRqatkdAg+iAGL+vlRi+neptaaalaYG+dk d+ + ++vfDlGggtfdvSilei+ Gvfevk+t+gDt lGGedfDeal+ hl++ef+k++gidlskd+ a+qrLreaaekaK+eL + +qt+++l+++t+d++g k+l+ k+++a fe+Lv+dl++rt++p+ k+++da+++k+ idev+lvGG+tR+P+vq++v+ +fgk+p+k+vnpDe+vA+GaA+q++vl+g  ++kd+lllDvtpLslgietlggv+tkli+rnttiptkk+qvfstaadnq++v+i+vlqgerela+dnkllg+f+l gippaprG+pqieV+fd+da+Gil+vsakdk+tgk++++ i++s glse+ei++mvk+ae+++e d+++++a+e+kne+++lvy+++k+l+e+++k+s++ k ++ve++i++l+e+++++    ee++ak+++l+++++ki+e++y
  MMETSP0890-20130614|6685_1  14 VVGIDLGTTNSCVAIMEGRNARVIENTEGSRTTPSMVAFADDdSRLVGMQAKRQAVTNPDNTLYATKRLIGRKFQDTEVKKVEKLVPYKIVKADaNDDAWVQIK-SGE--KLSPSQVGSMVLTKMKETAENFLGRTVSKAIVTVPAYFNDSQRQATKDAGRIAGLEVLRIINEPTAAALAYGMDKIDDGKLIAVFDLGGGTFDVSILEISGGVFEVKSTNGDTMLGGEDFDEALLTHLLAEFRKESGIDLSKDRLAMQRLREAAEKAKRELDNLAQTDVSLPFITADSTGpKHLNLKISKATFENLVADLIKRTIDPCAKCVSDAGIEKSSIDEVILVGGMTRMPQVQNTVETFFGKKPHKGVNPDEVVAMGAAIQGGVLRG--DIKDILLLDVTPLSLGIETLGGVFTKLIQRNTTIPTKKTQVFSTAADNQSQVQIKVLQGERELAADNKLLGQFDLVGIPPAPRGTPQIEVSFDLDADGILSVSAKDKATGKQQSVVIRSSGGLSEEEIDRMVKDAEANKELDEQRRKAAETKNEADALVYTAKKSLSEHSDKISAEVK-SEVETKITALEEATNKDPldLEELTAKINDLQAAAQKIGEAVY 613
                 79***************************************989*********************************************998653889******.577..7*******************************************************************************************************************************************************************************************************************************************************************************..**********************************************************************************************************************************************************************************.*************86665789******************9987 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0038       8.6       4      48 ..      15      66 ..      12     111 .. 0.71
   2 !   44.6   0.1   2.7e-15   6.1e-12      92     316 ..     146     384 ..     125     389 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0038
                E--B----EEEE.------..--EEE......ES-EEEEST---EEE---TTCC CS
   PF06723.8  4 lgiDLGtantlv.yvkgkg..ivlne......psvvAikkktkkvlavGeeAkk 48
                +giDLGt+n  v  ++g+   ++ n       ps+vA+  +++++  vG +Ak+
  MMETSP0890-20130614|6685_1 15 VGIDLGTTNSCVaIMEGRNarVIENTegsrttPSMVAFADDDSRL--VGMQAKR 66
                89*******998444554311343313333338899888887776..5666665 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 2.7e-15
                 S--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------.TTS----EEEE-----EEEEEE--.--EEEEEEES....----HHHHHHHHHHHHHHSB----HHHHH..HHHH----S--HHHH.....-EEE---BTT..-----..-EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-----EE-SSTTTTTT---- CS
   PF06723.8  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglp.veepsgnmvvdiGggttevavisl.ggivtsksvr....vaGdeldeaiikyirkkynlliGertaek..ikieigsavkeeeee.....kmeikGrdlv..tglpk..evevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 + ++ +++vP   ++ +r+A k+a + aG +   +i+ep aAA+  g++ +++ +   v d+Gggt +v+++ + gg+ + ks      ++G+++dea+++++  +++   G   +++    +++ +a++++++e     +++++   ++  +  pk  ++++s+++ ++ +++ +++ ++  ++   ++  e ++  +d+ ++l+GG + + +++++++  +g + + + +p ++va G++
  MMETSP0890-20130614|6685_1 146 TVSKAIVTVPAYFNDSQRQATKDAGRIAGLEVLRIINEPTAAALAYGMDkIDDGKLIAVFDLGGGTFDVSILEIsGGVFEVKSTNgdtmLGGEDFDEALLTHLLAEFRKESGIDLSKDrlAMQRLREAAEKAKREldnlaQTDVSLPFITadSTGPKhlNLKISKATFENLVADLIKRTIDPCAKCVSDAGIEKSS--IDE-VILVGGMTRMPQVQNTVETFFGKKPHKGVNPDEVVAMGAA 384
                 567899******************************************757777888899************972566666765333339************9999887777654332112333444444444442223444443322221123344114556666677777777777777777777666666443..444.6788********************************9986 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   5.9e-05      0.14       1      94 [.      14     147 ..      14     191 .. 0.68
   2 ?    2.8   0.3      0.04        90      51      51 ..     266     266 ..     202     389 .. 0.50
   3 ?   -1.0   0.1      0.57   1.3e+03      41      55 ..     597     611 ..     517     623 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.9e-05
                 xxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxx....xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxx RF
   PF14450.1   1 valvDiGagktdvavaekgklge..........lrvigvGeqks....rgikgghItdiddiakal.........ktaveeAeriaklkigsaivss.................ggaalknleelaeraggkpv 94 
                 v+++D+G++ ++va++e+ + +            ++++++  +s       k++ +t+ d + +a           t v++ e++   ki +a ++                  g+  l  ++e ae+ +g++v
  MMETSP0890-20130614|6685_1  14 VVGIDLGTTNSCVAIMEGRNARVientegsrttPSMVAFADDDSrlvgMQAKRQAVTNPDNTLYATkrligrkfqDTEVKKVEKLVPYKIVKADANDdawvqiksgeklspsqvGSMVLTKMKETAENFLGRTV 147
                 79***************944333444444454488888888888665545677888888777776666666666666666666665555555555446666667777777777766666666666666665444 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.04
                 x RF
   PF14450.1  51 a 51 
                 a
  MMETSP0890-20130614|6685_1 266 A 266
                 2 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.57
                 xxxxxxxxxxxxxxx RF
   PF14450.1  41 hItdiddiakalkta 55 
                  I+d++++a+ + +a
  MMETSP0890-20130614|6685_1 597 KINDLQAAAQKIGEA 611
                 355555555555444 PP

>> PF01031.15  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.037     179     245 ..     296     363 ..     267     373 .. 0.80
   2 ?   -2.3   0.1      0.59   1.3e+03     204     225 ..     556     577 ..     518     619 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
                 -------.----TTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH CS
  PF01031.15 179 rnsrGre.lplFvpekaFellvkkqikrLeepalkcvelvyeelekivkkvlskelkrfpnLkeeike 245
                   s+G++ l l +++ +Fe+lv + ikr  +p+ kcv++   e  +i + +l   ++r p++++++++
  MMETSP0890-20130614|6685_1 296 ADSTGPKhLNLKISKATFENLVADLIKRTIDPCAKCVSDAGIEKSSIDEVILVGGMTRMPQVQNTVET 363
                 556665426677999************************99998888888888899999999998876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.59
                 HTTHHHHHHHHHHHHHHHHHHH CS
  PF01031.15 204 krLeepalkcvelvyeelekiv 225
                 k+L e + k+  +v +e+e  +
  MMETSP0890-20130614|6685_1 556 KSLSEHSDKISAEVKSEVETKI 577
                 3333333344444444433333 PP

>> PF02782.11  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.8e-05      0.18     145     195 ..     338     389 ..     306     390 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.8e-05
  PF02782.11 145 sgaplsrlavdGGgsrndllmqllAdilg.vpVerprtaeatalGaAllAav 195
                 +++ +++++++GG++r + ++ +    +g +p + + ++e +a GaA+ ++v
  MMETSP0890-20130614|6685_1 338 EKSSIDEVILVGGMTRMPQVQNTVETFFGkKPHKGVNPDEVVAMGAAIQGGV 389
                 6778*************************888777777**********9986 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   3.1e+03      24      74 ..     395     445 ..     393     455 .. 0.68
   2 ?    8.2   2.8   0.00099       2.2      43     122 ..     531     607 ..     515     644 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.3
                 HHCHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHC CS
   PF08702.5  24 qdlldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqak 74 
                 +d+l    + ++  ie+l    ++l +++++i  + +++  + +++q+q +
  MMETSP0890-20130614|6685_1 395 KDILLLDVTPLSLGIETLGGVFTKLIQRNTTIPTKKTQVFSTAADNQSQVQ 445
                 555555556666667777777778888888777777777777777777654 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00099
                 CCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  43 nlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqr 122
                 ++L++  +k  e+++   ++  + k+ +++++  d+i  +v++++e+ki + le+  ++ +  +++L+  +++ +   q+
  MMETSP0890-20130614|6685_1 531 KELDEQRRKAAETKNEADALVYTAKKSLSEHS--DKISAEVKSEVETKI-TALEEATNKDPLDLEELTAKINDLQAAAQK 607
                 45566666666666666666555555555544..447777777777777.777777777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1395  (0.102033); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.21u 0.23s 00:00:01.44 Elapsed: 00:00:02.20
# Mc/sec: 710.19
//
Query:       MMETSP0890-20130614|6687_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-05   24.1   0.0        0.4   11.1   0.0    3.1  3  PF12681.2  Glyoxalase-like domain
    0.00016   21.4   0.0       0.63    9.9   0.0    2.4  2  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00032       2.2       1      23 [.      51      73 ..      51     133 .. 0.75
   2 !   11.1   0.0   5.8e-05       0.4       1      23 [.     176     197 ..     176     230 .. 0.86
   3 ?    0.3   0.0      0.14   9.6e+02      96     107 ..     294     305 ..     282     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00032
   PF12681.2  1 lpvsdleaaraFYeklLGfevae 23
                ++v++++ + +F+ek+LG++ ++
  MMETSP0890-20130614|6687_1 51 IRVPNVAVTGDFFEKALGMQRVG 73
                79*****************9988 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.8e-05
   PF12681.2   1 lpvsdleaaraFYeklLGfevae 23 
                 l+v+dl a++ FY++ LGf  a 
  MMETSP0890-20130614|6687_1 176 LRVTDLSASLSFYQN-LGFHKAP 197
                 78*************.9**9887 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.14
   PF12681.2  96 yvrDPdGnliel 107
                 +++DPdG ++++
  MMETSP0890-20130614|6687_1 294 FLYDPDGLPLRV 305
                 789****99987 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00015       1.1       7      61 ..      51     113 ..      45     132 .. 0.85
   2 !    9.9   0.0   9.2e-05      0.63       6      26 ..     175     194 ..     170     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00015
                 EEES-HHHHHHHHHHHH--EEEEEEEE........SCSCCEEEEEEEETSSCEEEEEEEECCT CS
  PF00903.20   7 lavgdleksldFYtkvLGfklvkktdn........teeteglriaffhaggghielvlneaps 61 
                 ++v++++ + dF++k+LG++ v    +         ++  +++i  f+ +ggh ++ l+e+++
  MMETSP0890-20130614|6687_1  51 IRVPNVAVTGDFFEKALGMQRVGTQLFafgptsleRPPSFFPGISTFDQDGGHFAIRLEEGAE 113
                 8899999999*************9999999988877777899999999999999888887766 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 9.2e-05
                 EEEES-HHHHHHHHHHHH--E CS
  PF00903.20   6 alavgdleksldFYtkvLGfk 26 
                 +l+v+dl++sl+FY++ LGf+
  MMETSP0890-20130614|6687_1 175 SLRVTDLSASLSFYQN-LGFH 194
                 689*************.9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.74
# Mc/sec: 1088.08
//
Query:       MMETSP0890-20130614|6689_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   62.8   1.9    3.4e-06   26.7   0.1    5.2  5  PF13854.1  Kelch motif
    2.8e-15   55.7   5.3    1.2e-07   31.3   0.0    5.5  5  PF13418.1  Galactose oxidase, central domain
    3.6e-15   55.5   9.5    4.9e-05   23.2   0.5    6.5  7  PF13415.1  Galactose oxidase, central domain
    1.2e-13   50.3   8.4     0.0013   18.5   0.0    5.5  6  PF07646.10 Kelch motif
    1.6e-09   37.4   2.4     0.0001   22.2   0.0    4.8  5  PF13964.1  Kelch motif
    7.9e-08   31.7   9.7    2.2e-07   30.3   6.7    1.8  1  PF00628.24 PHD-finger
      4e-06   26.1   0.0      0.018   14.4   0.0    3.9  3  PF01344.20 Kelch motif
     0.0001   21.8   0.9    0.00026   20.5   0.6    1.8  1  PF12937.2  F-box-like
     0.0016   17.9   0.2     0.0039   16.6   0.1    1.6  1  PF00646.28 F-box domain


Domain annotation for each model (and alignments):
>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.8   4.2e+03      29      39 ..     294     304 ..     288     305 .. 0.81
   2 !    7.2   0.0    0.0029       4.4       2      41 ..     331     371 ..     330     372 .. 0.77
   3 !   26.7   0.1   2.2e-09   3.4e-06       2      41 ..     465     507 ..     465     508 .. 0.92
   4 !   18.5   0.0   8.6e-07    0.0013       2      41 ..     520     557 ..     519     558 .. 0.95
   5 ?    5.2   0.0     0.012        18       9      23 ..     598     612 ..     596     633 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.8
   PF13854.1  29 svsddvyvLsl 39 
                 + +d vy L l
  MMETSP0890-20130614|6689_1 294 TTYDTVYLLRL 304
                 679****9987 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0029
   PF13854.1   2 PppRarhcavvvs.gniylyGGksgnddsvsddvyvLslps 41 
                 P pR  +  + ++ + ++l GG+s  +++++  +y L+l+ 
  MMETSP0890-20130614|6689_1 331 PLPRLDAVLCDDGqNRLLLSGGFSPDSNTYFQGLYLLDLQQ 371
                 6666666666444468********9889999******9985 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 2.2e-09
   PF13854.1   2 PppRarhcavvvsgniylyGGksg...nddsvsddvyvLslps 41 
                 P pRa+h+a+  s+ ++++GG++    +++++ d+v+ L++ s
  MMETSP0890-20130614|6689_1 465 PGPRAGHAAARTSTRLWYFGGMGRrtdGSMGYDDQVWTLDVDS 507
                 99*********************7778888889*******987 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 8.6e-07
   PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLslps 41 
                 P +Ra+h+++  ++ + ++GG +  +++++ d+ +L +p+
  MMETSP0890-20130614|6689_1 520 PRARAGHSMISIGSHLVVFGGLN--SKTFLADLAILHMPT 557
                 99*********************..5**********9997 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.012
   PF13854.1   9 cavvvsgniylyGGk 23 
                 ++++vs+ i+l+GG 
  MMETSP0890-20130614|6689_1 598 SSDTVSSRILLFGGT 612
                 6789**********7 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.26   3.9e+02       4      22 ..     176     194 ..     174     201 .. 0.85
   2 !   12.7   0.0   4.7e-05     0.072       1      44 [.     333     377 ..     333     384 .. 0.90
   3 !    7.6   0.2    0.0019       2.9       1      23 [.     467     488 ..     467     520 .. 0.70
   4 !   31.3   0.0   7.6e-11   1.2e-07       1      43 [.     522     562 ..     522     579 .. 0.91
   5 ?   -0.8   0.0      0.77   1.2e+03      12      20 ..     603     611 ..     598     613 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.26
   PF13418.1   4 ghsavavpdgrlylfGGen 22 
                 + ++v+vp  +l+ +GG+ 
  MMETSP0890-20130614|6689_1 176 STTSVFVPTLGLVSIGGYE 194
                 679999***********96 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.7e-05
   PF13418.1   1 pRaghsavavpdgrlylfGGenedg.gplnDlyvfDlstntWtrl 44 
                 pR +++++ ++ +rl+l GG ++d  + +  ly++Dl++ +W+ l
  MMETSP0890-20130614|6689_1 333 PRLDAVLCDDGQNRLLLSGGFSPDSnTYFQGLYLLDLQQHSWRCL 377
                 899999999999************87888888**********987 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0019
   PF13418.1   1 pRaghsavavpdgrlylfGGene 23 
                 pRagh+a  + + rl+ fGG++ 
  MMETSP0890-20130614|6689_1 467 PRAGHAAART-STRLWYFGGMGR 488
                 9*********.79******9874 PP

  == domain 4    score: 31.3 bits;  conditional E-value: 7.6e-11
   PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtr 43 
                 +Raghs+++++   l++fGG n++ ++l Dl ++   t tW+r
  MMETSP0890-20130614|6689_1 522 ARAGHSMISIG-SHLVVFGGLNSK-TFLADLAILHMPTLTWSR 562
                 7*********6.69999******9.9***************75 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 0.77
   PF13418.1  12 dgrlylfGG 20 
                 + r++lfGG
  MMETSP0890-20130614|6689_1 603 SSRILLFGG 611
                 579*****9 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.6   3.9e+03       8      47 ..     191     236 ..     187     238 .. 0.59
   2 ?    0.5   0.0      0.43   6.5e+02      14      42 ..     292     335 ..     286     340 .. 0.65
   3 !   11.3   0.0   0.00018      0.28       2      33 ..     345     376 ..     344     390 .. 0.90
   4 ?    5.0   0.0     0.017        25      36      47 ..     463     474 ..     447     476 .. 0.83
   5 !   23.2   0.5   3.2e-08   4.9e-05       3      48 ..     479     530 ..     477     531 .. 0.86
   6 !   14.0   0.0   2.6e-05     0.039       2      48 ..     533     589 ..     532     590 .. 0.82
   7 ?   -0.6   0.0      0.99   1.5e+03       3      23 ..     605     632 ..     604     636 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.6
   PF13415.1   8 GGlgddgqtrlndvyvldldtn....tweei..gslPppRaghtat 47 
                 GG+  ++ t++  v+ l+ + +     w+++     P++  + ++t
  MMETSP0890-20130614|6689_1 191 GGYELSSFTANRGVFLLSKSHGetlpMWKRLpiQGVPGADFCSHST 236
                 6666666666666666666666444556666544467777777666 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.43
   PF13415.1  14 gqtrlndvyvldl..dtn..........tweei...gslPppRa 42 
                 g+t + +vy l l  d++          +w      g++P pR 
  MMETSP0890-20130614|6689_1 292 GATTYDTVYLLRLtlDKTkskenkamcgSWISYsltGDIPLPRL 335
                 67778889988774433345555666665553355688888886 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00018
   PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntwee 33 
                 ++l++ GG+ +d++t+   +y ldl+  +w+ 
  MMETSP0890-20130614|6689_1 345 NRLLLSGGFSPDSNTYFQGLYLLDLQQHSWRC 376
                 799***************************85 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.017
   PF13415.1  36 slPppRaghtat 47 
                  +P+pRagh+a+
  MMETSP0890-20130614|6689_1 463 KCPGPRAGHAAA 474
                 58********97 PP

  == domain 5    score: 23.2 bits;  conditional E-value: 3.2e-08
   PF13415.1   3 elyvfGGlgd...dgqtrlndvyvldldtntweei...gslPppRaghtata 48 
                 +l+ fGG g+   ++  +   v+ ld+d+++w +    g  P +Ragh++ +
  MMETSP0890-20130614|6689_1 479 RLWYFGGMGRrtdGSMGYDDQVWTLDVDSWQWSRQpcrGASPRARAGHSMIS 530
                 6899***998775557777**************6667************976 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 2.6e-05
   PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntweei............gslPppRaghtata 48 
                   l+vfGGl+  + t+l+d+ +l + t tw +             + lP + ++h++ +
  MMETSP0890-20130614|6689_1 533 SHLVVFGGLN--SKTFLADLAILHMPTLTWSRPnfnlvpstrmrpAILPLASTSHSLFS 589
                 5699******..*******************6666667666667566788999999865 PP

  == domain 7    score: -0.6 bits;  conditional E-value: 0.99
   PF13415.1   3 elyvfGGlgd.......dgqtrlndvyv 23 
                 ++++fGG +        +++t ++d + 
  MMETSP0890-20130614|6689_1 605 RILLFGGTRAwglsafaPTATEYHDGDL 632
                 699****876555666655666655555 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.5   8.4e+03      32      46 ..      68      82 ..      67      84 .. 0.76
   2 ?   -0.3   0.0      0.76   1.1e+03      11      21 ..     184     201 ..     175     215 .. 0.65
   3 !   15.6   0.0   7.3e-06     0.011       5      45 ..     338     377 ..     334     380 .. 0.91
   4 !   14.2   0.3     2e-05     0.031       1      46 [.     467     514 ..     467     517 .. 0.95
   5 !   18.5   0.0   8.7e-07    0.0013       1      46 [.     522     564 ..     522     565 .. 0.95
   6 ?    1.7   0.0      0.19   2.8e+02       6      20 ..     598     612 ..     598     634 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.5
  PF07646.10 32 lnvldpeknvWeelt 46
                +  + + +++W++++
  MMETSP0890-20130614|6689_1 68 VGRWALVSKKWRNVS 82
                566888899999986 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.76
  PF07646.10  11 ggkiyvvGGa.......h 21 
                    ++++GG+       +
  MMETSP0890-20130614|6689_1 184 TLGLVSIGGYelssftaN 201
                 556899****55555444 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 7.3e-06
  PF07646.10   5 hsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeel 45 
                 + +  +++++++ GG+ +++ + ++  l++ld++ ++W++l
  MMETSP0890-20130614|6689_1 338 VLCDDGQNRLLLSGGF-SPDSNTYFQGLYLLDLQQHSWRCL 377
                 5677889*********.**********************97 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 2e-05
  PF07646.10   1 pryghsavvpggkiyvvGGa..htdngllsssdlnvldpeknvWeelt 46 
                 pr+gh+a+    ++  +GG+   td+   + + +++ld ++++W++ +
  MMETSP0890-20130614|6689_1 467 PRAGHAAARTSTRLWYFGGMgrRTDGSMGYDDQVWTLDVDSWQWSRQP 514
                 79******************************************9865 PP

  == domain 5    score: 18.5 bits;  conditional E-value: 8.7e-07
  PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeelt 46 
                 +r+ghs+ ++g+ ++v+GG    n   ++ dl +l   + +W++ +
  MMETSP0890-20130614|6689_1 522 ARAGHSMISIGSHLVVFGGL---NSKTFLADLAILHMPTLTWSRPN 564
                 599*****************...*******************9865 PP

  == domain 6    score: 1.7 bits;  conditional E-value: 0.19
  PF07646.10   6 savvpggkiyvvGGa 20 
                 s+ ++ ++i+++GG 
  MMETSP0890-20130614|6689_1 598 SSDTVSSRILLFGGT 612
                 577899********6 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   3.6e+03      12      33 ..     185     207 ..     178     222 .. 0.69
   2 !    6.1   0.0    0.0078        12      11      41 ..     344     375 ..     336     381 .. 0.88
   3 ?    4.4   0.1     0.027        41       2      41 ..     468     511 ..     467     518 .. 0.85
   4 !   22.2   0.0   6.6e-08    0.0001       1      42 [.     522     562 ..     522     570 .. 0.94
   5 ?   -1.6   0.0       2.2   3.3e+03       6      19 ..     598     611 ..     598     614 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.4
   PF13964.1  12 gkiyifGGytns.gkylndvlvy 33 
                  +++ +GGy+ s +++ + v+++
  MMETSP0890-20130614|6689_1 185 LGLVSIGGYELSsFTANRGVFLL 207
                 46888999998766666555555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0078
   PF13964.1  11 ggkiyifGGytns.gkylndvlvydpetksWe 41 
                 ++++ + GG++ + ++y+  ++++d++  sW+
  MMETSP0890-20130614|6689_1 344 QNRLLLSGGFSPDsNTYFQGLYLLDLQQHSWR 375
                 3689999****99******************7 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.027
   PF13964.1   2 raghsavsvggkiyifGGytns....gkylndvlvydpetksWe 41 
                 ragh+a+    ++++fGG +        y ++v+ +d++++ W+
  MMETSP0890-20130614|6689_1 468 RAGHAAARTSTRLWYFGGMGRRtdgsMGYDDQVWTLDVDSWQWS 511
                 77777777888999999999888999888999***********8 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 6.6e-08
   PF13964.1   1 praghsavsvggkiyifGGytnsgkylndvlvydpetksWeq 42 
                 +raghs++s+g+++++fGG++   ++l d+ +++  t +W++
  MMETSP0890-20130614|6689_1 522 ARAGHSMISIGSHLVVFGGLNS-KTFLADLAILHMPTLTWSR 562
                 599******************9.8****************85 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 2.2
   PF13964.1   6 savsvggkiyifGG 19 
                 s+ +v ++i +fGG
  MMETSP0890-20130614|6689_1 598 SSDTVSSRILLFGG 611
                 5678999******9 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   6.7   1.4e-10   2.2e-07       1      49 [.     123     166 ..     109     168 .. 0.95

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.4e-10
                 SBTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   1 rCkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 rC+ Cg    +ge+++Cd C+  +Hl+C++++l+  e p+g w C+ C 
  MMETSP0890-20130614|6689_1 123 RCEHCGL---GGEILMCDFCNCVYHLNCVDPPLS--EAPQGLWRCPACV 166
                 6999999...9**********************9..888899******7 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.28   4.3e+02      12      43 ..     345     377 ..     343     377 .. 0.83
   2 !    5.8   0.1    0.0059       8.9       1      44 [.     467     514 ..     467     515 .. 0.95
   3 !   14.4   0.0   1.2e-05     0.018       1      41 [.     522     561 ..     522     563 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.28
                 TEEEEE---BS.TTS-TTEEEEEETTTTEEEEE CS
  PF01344.20  12 gkiYviGGrdg.dtnalnsVerYDpvtntWekl 43 
                 +++   GG+++ ++++    + +D+  ++W+ l
  MMETSP0890-20130614|6689_1 345 NRLLLSGGFSPdSNTYFQGLYLLDLQQHSWRCL 377
                 56667799999999999999999*******975 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0059
                 SSSCEEEEEETTEEEEE---BS....TTS-TTEEEEEETTTTEEEEEC CS
  PF01344.20   1 arssagvvvldgkiYviGGrdg....dtnalnsVerYDpvtntWeklp 44 
                 +r++++++    +++ +GG       ++ + + V+ +D  + +W++ p
  MMETSP0890-20130614|6689_1 467 PRAGHAAARTSTRLWYFGGMGRrtdgSMGYDDQVWTLDVDSWQWSRQP 514
                 799*****************************************9987 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.2e-05
                 SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEE CS
  PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWe 41 
                 ar+++++ +++ ++ v+GG ++  ++l +  +++  t tW+
  MMETSP0890-20130614|6689_1 522 ARAGHSMISIGSHLVVFGGLNS-KTFLADLAILHMPTLTWS 561
                 79********************.999988877777777775 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.6   1.7e-07   0.00026       2      45 ..      49      90 ..      48      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.7e-07
                HHS-HHHHHHHHTTS-HHHHHHH----HHHHHHHHT-HHHHHHH CS
   PF12937.2  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtlLWrrlv 45
                 +LP E+ +++  +L++ +  r alV+++Wr+v l++  W+ ++
  MMETSP0890-20130614|6689_1 49 WQLPLEVSSKVVEWLEAVSVGRWALVSKKWRNVSLKH--WQSVH 90
                58*******************************9876..77765 PP

>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.5e-06    0.0039       5      37 ..      50      82 ..      48      86 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.5e-06
                HS-HHHHHHHHTTS-HHHHHHHCTS-HHHHHHH CS
  PF00646.28  5 rLPsevlenILerLpfsdllalrlVSkgwrili 37
                +LP+ev  ++ e+L+ +++ + +lVSk+wr++ 
  MMETSP0890-20130614|6689_1 50 QLPLEVSSKVVEWLEAVSVGRWALVSKKWRNVS 82
                7*****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:01.28
# Mc/sec: 1207.54
//
Query:       MMETSP0890-20130614|6691_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-99  331.5   4.1    4.5e-99  331.5   2.9    1.5  2  PF00750.14 tRNA synthetases class I (R)
    1.5e-27   95.7   0.0    3.8e-27   94.4   0.0    1.8  1  PF05746.10 DALR anticodon binding domain
    4.5e-20   71.8   0.1    2.4e-19   69.5   0.0    2.3  2  PF03485.11 Arginyl tRNA synthetase N terminal domain
    0.00061   18.8   0.3     0.0014   17.6   0.2    1.6  1  PF01406.14 tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.038   12.5   0.6       0.24    9.9   0.1    2.2  2  PF09334.6  tRNA synthetases class I (M)


Domain annotation for each model (and alignments):
>> PF00750.14  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.5   2.9  1.6e-102   4.5e-99      14     354 .]     194     531 ..     184     531 .. 0.93
   2 ?   -3.0   0.0      0.81   2.2e+03     216     240 ..     562     586 ..     561     589 .. 0.76

  Alignments for each domain:
  == domain 1    score: 331.5 bits;  conditional E-value: 1.6e-102
  PF00750.14  14 satkekkkvvvefsspNiakeiHvGhlRstiiGdalsrlleflGykvvrenyvgDwGtQfglliaslekaakeeltke..ieiqdledfYkeskidkiaeeieekakdalkerarsyvvllqsedeefrkawkkklvdlikselnkiytaldvtlie...gesvkkerlndivkelkdkglvyekdgalvvkltef.gddkdrvviksDgkalYittDvaaalerleerkfdlliyvldadqegyiarlfaaakklgydpesvevlhigfgvvLgkdgkvrlstRaGnvvtLddlldealeralq.ikeknkdltadeleavaeaigvdaikyadlssnrttdyefdl 354
                 ++++e+++vvv++sspNiake+HvGhlRst+iGd l+++lef G +v+r+n+vgDwGtQfg+l a+le+++++++ k+    i +l ++Y+ sk +++++e        +ke ar+ vv lq+++e+ rk+wk  +++ ++ e++++y++l v +     ges ++ +l+div++l+++g++ e++galvv+ +    +++++++ ksDg++ Y ttD+aaa++r +e+++ +++yv da+q+ +++++f +a+ +g +  +++++h+ fg+v g+dgk +++tR+G++v+L++lldea+ ra   ++ + +  +  +++++a aig+ a+kyadl+ nr+++y f++
  MMETSP0890-20130614|6691_1 194 VNNQEQIRVVVDYSSPNIAKEMHVGHLRSTVIGDCLANVLEFRGRHVIRQNHVGDWGTQFGMLLAYLEESTDDHVEKKesFTISNLVQVYRASKQRFDTDET-------FKEYARKRVVELQAGEENARKTWKA-ICEASRIEFDQVYQRLGVSSKLeekGESAYNAMLQDIVAKLEAQGMAIESEGALVVFDESQdKNKVPLIIRKSDGGFNYATTDLAAAAYRSQELNASRVLYVTDAGQASHFRQVFQVARRAGLVSTTISLEHVPFGLVQGEDGK-KFKTRSGDTVKLKELLDEAVVRAKAdLEQR-TSNPDLDQDELAAAIGIAAVKYADLKVNRESNYRFSF 531
                 567899*******************************************************************9876511689*******************.......*************************.*****************98743479*******************************9985534556789***************************************************************************.************************955554.44444445556789*********************97 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.81
  PF00750.14 216 DgkalYittDvaaalerleerkfdl 240
                 Dg +   ++D+a +le+ e+r+  +
  MMETSP0890-20130614|6691_1 562 DGLFDTYGSDIALILEKDEDRNLAR 586
                 666666789*******998887665 PP

>> PF05746.10  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   1.4e-30   3.8e-27       1     119 []     545     665 .]     545     665 .] 0.95

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 1.4e-30
                 HHHHHHHHHHHHHHHHH------HHHHHH..S--HHHHHHHHHHHHHHHHHHH------THHHHHHHHHHHHHHHHHHHH--STTS----H.HHHHHHHHHHHHHHHHHHHH------S-- CS
  PF05746.10   1 vqyahaRiksilrkaeeegekleeealal..leeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvkavrqvLangLdlLGieapekm 119
                 ++y++aRi+ i r+ +++g  +++  +    le++e+++L++ la+f  +l++   +l+p+ l+eylyeL++tf++fY++++v  ++  elaa+R  L+ a++++L+ gL+lLGi+++e++
  MMETSP0890-20130614|6691_1 545 MLYSYARIAGIKRQCADDGLFDTYGSDIAliLEKDEDRNLARVLARFAPTLADLDTDLRPNILCEYLYELSQTFNRFYEACPVRRASTTELAASRASLCAATANTLRLGLRLLGIPVLERL 665
                 58***********9999998888777766789999***********************************************************************************986 PP

>> PF03485.11  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   8.7e-23   2.4e-19       5      85 .]      91     170 ..      86     170 .. 0.86
   2 ?   -3.2   0.0       4.2   1.2e+04      56      70 ..     353     368 ..     340     370 .. 0.70

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 8.7e-23
                 HHHHHHHHHH.-TT---.-------SSTT---B---HHHHHHHHCTS-HHHHHHHHHHHHCTT--.--EEEE.----EEEE- CS
  PF03485.11   5 kaikealskalgldleveeavietpkdpefGDyatnvamklakklkknPreiAeeiaekleesel.iekvevagpGFiNffl 85 
                 +a+ e+l +   +++ + e++++t ++ efGDy++n+am+lakk++++Pr++Ae i e+l ++     +ve+agpGF+N++l
  MMETSP0890-20130614|6691_1  91 TAVIESLISR--FPEIEAEPMVTTATKFEFGDYQCNAAMALAKKVGMKPRQVAEVISEELVSRLGsSVEVEIAGPGFLNLRL 170
                 5555555555..456677999**99**************************************886779***********97 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.2
                 HHHHHHHHHCTT--.- CS
  PF03485.11  56 iAeeiaekleesel.i 70 
                   ++i++kle++++ i
  MMETSP0890-20130614|6691_1 353 MLQDIVAKLEAQGMaI 368
                 5577888888877655 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   5.3e-07    0.0014       7     138 ..     199     384 ..     193     407 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.3e-07
                 ---E-EEE---BTTS--B-----HHHHHHHHHHHHHH----EEEEE-BB--SHHH.HHHHHH----.....................................................HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHH---EEE-----EEE-GGG-TT CS
  PF01406.14   7 ekkvtlYvCGptvydashlGhaRslvvfDvlrrilqalgYdvqfvqnvtDidDki.ikrarqeeks.....................................................vkelaekfieeykkdleaLnvlkptletrvtekideiielvekliekgyaYvssdgdvyfdvsslke 138
                 + +v +    p +  ++h+Gh Rs+v+ D l+++l+ +g +v   + v D   +  ++ a  ee++                                                     +k+++e    e+ + ++ L+v     e+  + + + + ++v+kl ++g+a +s+   v+fd s++k+
  MMETSP0890-20130614|6691_1 199 QIRVVVDYSSPNIAKEMHVGHLRSTVIGDCLANVLEFRGRHVIRQNHVGDWGTQFgMLLAYLEESTddhvekkesftisnlvqvyraskqrfdtdetfkeyarkrvvelqageenarktWKAICEASRIEFDQVYQRLGVSSKLEEKGESAYNAMLQDIVAKLEAQGMAIESEGALVVFDESQDKN 384
                 5555555667889999**************************99999***9887534455555555699**************************************************9*********************9888888888999999****************9999***998876 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   8.7e-05      0.24      11      51 ..     212     252 ..     202     312 .. 0.73
   2 ?    0.1   0.0     0.078   2.1e+02      55     117 ..     308     371 ..     298     386 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.7e-05
                 ----B-------HHHHHHHHHHHH---EEEEE---B----H CS
   PF09334.6  11 ngkpHlGhlystiaaDvlarykrlrgeevlfvtgtDehGtk 51 
                  +++H+Ghl st+++D+la     rg++v+       +Gt+
  MMETSP0890-20130614|6691_1 212 AKEMHVGHLRSTVIGDCLANVLEFRGRHVIRQNHVGDWGTQ 252
                 5789***********************99876666666665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.078
                 HHHH--..--HHHHHHHHHHHHHHHHHHHT---SB---TTSHHHHHHHHHHHHHHHH---EEEEE CS
   PF09334.6  55 kAekeg..ltpqelvdkvseefkelfkklnisfDkfirTtseehkelvqeffkklkekgliyeke 117
                 +A +e+   t +++++  + ef++++++l++s     + +s + + + q+++ kl+++g+  e+e
  MMETSP0890-20130614|6691_1 308 QAGEENarKTWKAICEASRIEFDQVYQRLGVSSKLEEKGES-AYNAMLQDIVAKLEAQGMAIESE 371
                 55444411567899999999999999999999766555555.55678899999999999755443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:01.28
# Mc/sec: 1244.98
//
Query:       MMETSP0890-20130614|6694_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     3e-157  523.3   0.0   3.5e-157  523.1   0.0    1.0  1  PF06068.8  TIP49 C-terminus
    7.9e-12   45.3   0.6    1.1e-07   31.9   0.1    3.2  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.9e-07   29.8   0.1      0.028   14.4   0.0    2.7  2  PF13401.1  AAA domain
    8.9e-06   26.0   0.1    0.00027   21.2   0.0    2.5  3  PF13191.1  AAA ATPase domain
    1.3e-05   24.2   3.4      0.011   14.6   0.1    2.8  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00014   21.5   0.0      0.039   13.5   0.0    2.5  2  PF07728.9  AAA domain (dynein-related subfamily)
    0.00018   21.0   0.0    0.00046   19.7   0.0    1.7  1  PF13245.1  Part of AAA domain
    0.00076   19.3   0.0     0.0016   18.3   0.0    1.5  1  PF13521.1  AAA domain
     0.0021   17.3   0.0     0.0036   16.6   0.0    1.4  1  PF13481.1  AAA domain
     0.0026   16.8   0.1       0.17   10.9   0.0    2.4  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0035   17.1   0.0        3.4    7.4   0.0    2.4  2  PF13173.1  AAA domain
     0.0048   17.5   0.0      0.011   16.4   0.0    1.7  1  PF13207.1  AAA domain
     0.0075   15.2   0.2      0.014   14.4   0.1    1.4  1  PF06414.7  Zeta toxin
     0.0087   15.8   0.0      0.028   14.2   0.0    1.9  2  PF13671.1  AAA domain
     0.0088   16.2   0.0      0.029   14.5   0.0    2.0  2  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.0   0.0        2.1    7.6   0.0    2.3  2  PF00158.21 Sigma-54 interaction domain
      0.012   14.9   0.9      0.062   12.5   0.2    2.1  2  PF01695.12 IstB-like ATP binding protein
      0.027   13.1   0.0      0.049   12.3   0.0    1.4  1  PF03796.10 DnaB-like helicase C terminal domain
      0.028   13.2   0.0      0.046   12.5   0.0    1.3  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.074   11.2   0.2       0.39    8.8   0.0    2.1  3  PF07088.6  GvpD gas vesicle protein


Domain annotation for each model (and alignments):
>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.1   0.0  5.1e-160  3.5e-157      48     397 ..       1     358 [.       1     359 [. 0.99

  Alignments for each domain:
  == domain 1    score: 523.1 bits;  conditional E-value: 5.1e-160
   PF06068.8  48 laGravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalRksigvrikeekevleGevveleveeaenpls.kekkikevkitlkttkeekklklgskiieelqkekvkegDvivieketGkvkklGrsearakefDiekdefvelPkGevekkkevvqevtLhdlDvanarp.......qdllslllqllkgkkteiteklReeinkkvakyveegkaeivpGvlfiDevhmlDiecfsylnraleselaPivilatnrgiakirGtdiksphGipvDlldRlliiktepytkeeikkilkiRakeeeikldeealdllakigiktsLRyaiqLltpaki 397
                 +aGra+LlaG pgtGktala+a+++elg +vpf+ ++gsevys+e+kktevl++++R++ig+ri+e+kev+eGev+e+++ee  npl+ ++++i++v + l+t+k++k+l+l+++i+e++q+ekv++gDvi+ie++tG+vk+ Gr++++a efD+e++ +v+lPkG+v+kkkev+q+vtLhdlDvanarp        +l+s +    k kkteiteklR+ein++v++y+++g+ae+vpGvlfiDe+hmlDiecf+ylnrales++aPivi+atnrg+++irGtd++sphGip+DlldR+li++t++y+  ei +il+iRa++e++++ ++al  + +ig +ts+Rya q+ltpa++
  MMETSP0890-20130614|6694_1   1 MAGRALLLAGAPGTGKTALALAVAQELGPKVPFCPIVGSEVYSSEIKKTEVLMENFRRAIGLRIREQKEVYEGEVTEINLEEIANPLGgYGRTISHVVLGLRTNKGSKQLRLDPSIYEQMQREKVNVGDVIYIEASTGAVKRTGRCDHYAGEFDLEAEDYVPLPKGDVHKKKEVTQDVTLHDLDVANARPqsmspsdVGLMSSMGPFHKQKKTEITEKLRTEINRVVNRYIDQGVAELVPGVLFIDEIHMLDIECFTYLNRALESSIAPIVIFATNRGVCTIRGTDVISPHGIPIDLLDRMLILRTMQYSLAEIIDILAIRAETESLQIAHDALGAIGNIGAQTSVRYAGQVLTPASV 358
                 89**************************************************************************************9*****************************************************************************************************7777766678999*9******************************************************************************************************************************************************987 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   1.7e-10   1.1e-07       1      49 [.       6      56 ..       6     143 .. 0.82
   2 !   10.3   0.0   0.00077      0.53      26      70 ..     207     251 ..     187     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.7e-10
                EEEE-------HHHHHHHHHHCT..HEEEEEECCSSSSST-HHHHHHHHHH CS
  PF00004.24  1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirel 49
                +ll G pGtGKT+la ava+elg  v+f+ i gse+ s+ ++++e  ++++
  MMETSP0890-20130614|6694_1  6 LLLAGAPGTGKTALALAVAQELGpkVPFCPIVGSEVYSSEIKKTEVLMENF 56
                69********************655************88777777665554 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00077
                 EEEEECCSSSSST-HHHHHHHHHHHHH.HHHTS-SEEEEEETGGGC CS
  PF00004.24  26 fleisgsellskyvgesekkirelfke.akekakpsilfiDEidal 70 
                 f + + +e+++k+  e ++ ++ ++++ + e   p +lfiDEi+ l
  MMETSP0890-20130614|6694_1 207 FHKQKKTEITEKLRTEINRVVNRYIDQgVAEL-VPGVLFIDEIHML 251
                 66667788999999999999999999944455.59*********87 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00011     0.073       5      64 ..       4      62 ..       2     133 .. 0.73
   2 !   14.4   0.0     4e-05     0.028      68     125 ..     200     276 ..      89     279 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00011
   PF13401.1  5 gilvvtGesGvGKTtllrrlarqldeeaeaae..karvvfveapast..spkellqkllsalgl 64
                + l++ G +G+GKT l+  +a++l       +   +++v  e+ +s   +   l++++ +a+gl
  MMETSP0890-20130614|6694_1  4 RALLLAGAPGTGKTALALAVAQELGP-----KvpFCPIVGSEVYSSEikKTEVLMENFRRAIGL 62
                67899*****************9832.....123333333333333332333445555555555 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4e-05
   PF13401.1  68 g............rltteellealqealrrrrt........rlliiDEaqrLseealeelrsllddetgvklvlvGtp 125
                              +  te+l++ ++++++r           ++l iDE++ L  e++++l + l+ ++  ++v++ t+
  MMETSP0890-20130614|6694_1 200 LmssmgpfhkqkkTEITEKLRTEINRVVNRYIDqgvaelvpGVLFIDEIHMLDIECFTYLNRALE-SSIAPIVIFATN 276
                 04444445433443444555555555555555577789999*******************99899.888888888775 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.9e-07   0.00027      22     103 ..       3      77 ..       1     122 [. 0.83
   2 ?    2.0   0.0      0.31   2.1e+02     133     157 ..     241     265 ..     172     273 .. 0.77
   3 ?   -2.4   0.0       7.2   4.9e+03       3      23 ..     363     387 ..     361     392 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.9e-07
   PF13191.1  22 gsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga 103
                 g+ +ll+ G++G+GK++L+ +     ++++l  +   +  ++ ++ ys  i + + l+++  ++ + ++++ +e+ +   ++
  MMETSP0890-20130614|6694_1   3 GR-ALLLAGAPGTGKTALALA-----VAQELGPKVPFCPIVGSEV-YSSEIKKTEVLMENFRRAIGLRIREQKEVYEGEVTE 77 
                 55.9*****************.....9999999999999999994.777777899999999999999888888888777766 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.31
   PF13191.1 133 lvlvlDDlqwadresldlLealler 157
                  vl++D+++ +d e  + L ++le 
  MMETSP0890-20130614|6694_1 241 GVLFIDEIHMLDIECFTYLNRALES 265
                 79**********9999999888887 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 7.2
   PF13191.1   3 vGRere....leaLlaalrrvsegs 23 
                 +GRe+     +e++ ++++++ ++ 
  MMETSP0890-20130614|6694_1 363 YGREQIditdVEQVNELFKDAKASA 387
                 8998777777899999999887764 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.6e-05     0.011      53      78 ..       6      31 ..       3      39 .. 0.90
   2 !    9.3   0.4    0.0007      0.48     103     134 ..     241     272 ..     214     354 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.6e-05
   PF05496.7 53 vllyGpPGlGkttlakiiakelgvel 78
                +ll+G+PG Gkt+la  +a+elg ++
  MMETSP0890-20130614|6694_1  6 LLLAGAPGTGKTALALAVAQELGPKV 31
                69********************9765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0007
   PF05496.7 103 dvlfideihrlsraveevlysamedfkldivi 134
                  vlfideih l+ +   +l  a+e     ivi
  MMETSP0890-20130614|6694_1 241 GVLFIDEIHMLDIECFTYLNRALESSIAPIVI 272
                 59*********************998877777 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.6e-05     0.039       2      33 ..       6      39 ..       5      84 .. 0.83
   2 ?    5.6   0.0     0.016        11      66      91 ..     240     265 ..     193     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.6e-05
                EEEE------HHHHHHHGGGGB..S--EEEEE-- CS
   PF07728.9  2 vlLvGppGtgKselaerlaeal..nreveyvqlt 33
                +lL G+pGtgK+ la  +a+ l  + ++  + ++
  MMETSP0890-20130614|6694_1  6 LLLAGAPGTGKTALALAVAQELgpKVPFCPIVGS 39
                89****************9999755555555555 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.016
                 -SEEEEESGGG---HHHHHHHHHHHS CS
   PF07728.9  66 geilvlDEveraesevlnsLlsllee 91 
                 + +l++DE+++++ e +  L++ le 
  MMETSP0890-20130614|6694_1 240 PGVLFIDEIHMLDIECFTYLNRALES 265
                 679*******************9986 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.8e-07   0.00046      11      34 ..       4      27 ..       1      72 [. 0.82

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.8e-07
   PF13245.1 11 pllvvtGgPGtGKTttlaaiiaal 34
                + l++ G PGtGKT++++a++ +l
  MMETSP0890-20130614|6694_1  4 RALLLAGAPGTGKTALALAVAQEL 27
                56788***************9987 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.3e-06    0.0016       3      62 ..       7      67 ..       5      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.3e-06
   PF13521.1  3 vitGgpstGKTtlleaLaar...gypvvpEvarevleeklakgeealpweedllafaeavlea 62
                 + G+p+tGKT l+ a+a++   ++p  p v+ ev +++ +k+e  l++   + a+ +++ e+
  MMETSP0890-20130614|6694_1  7 LLAGAPGTGKTALALAVAQElgpKVPFCPIVGSEVYSSEIKKTEV-LMEN-FRRAIGLRIREQ 67
                578***************8888888899***********999986.7765.334555554443 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.2e-06    0.0036      33      62 ..       3      32 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.2e-06
   PF13481.1 33 gsltllaGapgtGKStlalqlaaavatGep 62
                g  +llaGapgtGK+ lal+ a  +  + p
  MMETSP0890-20130614|6694_1  3 GRALLLAGAPGTGKTALALAVAQELGPKVP 32
                7789****************9987765555 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00024      0.17      23      46 ..       4      27 ..       1      55 [. 0.83
   2 ?    3.4   0.0     0.048        33     107     133 ..     240     266 ..     227     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00024
  PF01078.16 23 HnlllvGppGsGKtmlakrlpsll 46
                  lll+G+pG+GKt la ++++ l
  MMETSP0890-20130614|6694_1  4 RALLLAGAPGTGKTALALAVAQEL 27
                479**************8877655 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.048
  PF01078.16 107 nGvLfLDElpefkrkvleaLRePledg 133
                  GvLf+DE+  ++ + +  L + le+ 
  MMETSP0890-20130614|6694_1 240 PGVLFIDEIHMLDIECFTYLNRALESS 266
                 6************99999999999986 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0053       3.6       2      27 ..       3      28 ..       2      94 .. 0.78
   2 !    7.4   0.0     0.005       3.4      52      92 ..     229     272 ..     207     284 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0053
   PF13173.1  2 rkilvitGpRrvGKttllkqlakell 27
                +++l++ G+ ++GKt l+  +a+el 
  MMETSP0890-20130614|6694_1  3 GRALLLAGAPGTGKTALALAVAQELG 28
                57899*************99998876 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.005
   PF13173.1  52 elfleklke.kkkylflDEiqevp.ewedalkslvddg.rnldv 92 
                 +++ +   e    +lf+DEi++++ e +++l++ +++   ++ +
  MMETSP0890-20130614|6694_1 229 RYIDQGVAElVPGVLFIDEIHMLDiECFTYLNRALESSiAPIVI 272
                 33333322245568*********879999999999976444444 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-05     0.011       3      56 ..       7      74 ..       6     165 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.6e-05
                --B--TT---HHHHHHHHHHST.....EEEEEGGGB-...............-GGGS-B--.---B--SSGGGB- CS
   PF13207.1  3 aitGppGsGKsTlakeLaerlg.....lpvlslddll...............reeglkeld.dgereskdadadl 56
                ++ G+pG+GK+ la ++a++lg     +p++  +  +               r+ gl++++ ++++      +++
  MMETSP0890-20130614|6694_1  7 LLAGAPGTGKTALALAVAQELGpkvpfCPIVGSEV-YsseikktevlmenfrRAIGLRIREqKEVY------EGE 74
                678******************97766666533333.223334444444444444444444422222......222 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     2e-05     0.014      17      41 ..       4      28 ..       2      40 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-05
   PF06414.7 17 kavllgGqpGAGKtslaellleela 41
                +a+ll+G pG GKt+la ++ +el+
  MMETSP0890-20130614|6694_1  4 RALLLAGAPGTGKTALALAVAQELG 28
                689******************9985 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     4e-05     0.028       2      42 ..       6      51 ..       5      81 .. 0.83
   2 ?   -3.3   0.0       9.5   6.5e+03      68      90 ..     265     287 ..     253     299 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4e-05
   PF13671.1  2 vllvGlpGsGKstlaerllkklg.....yvrlsqdtlrkrlfgtdq 42
                +ll G+pG+GK+ la +++++lg     + ++ + ++++++++t+ 
  MMETSP0890-20130614|6694_1  6 LLLAGAPGTGKTALALAVAQELGpkvpfCPIVGSEVYSSEIKKTEV 51
                5789******************999998888998888888877654 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 9.5
   PF13671.1  68 sagrsvivdatnlsreerarfvk 90 
                 s+ +++++ atn+  ++ +  + 
  MMETSP0890-20130614|6694_1 265 SSIAPIVIFATNRGVCTIRGTDV 287
                 34456888899998888766555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.3e-05     0.029       2      53 ..       7      64 ..       6     137 .. 0.76
   2 ?   -1.9   0.0       5.1   3.5e+03      11      30 ..     212     231 ..     212     254 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.3e-05
   PF13238.1  2 litGtpGvGKtTlakeLaerl......gdvlrdlakengleeevddkidtkeskelde 53
                l++G+pG+GKt la + a++l        ++ ++++++++ ++   ++++++   l++
  MMETSP0890-20130614|6694_1  7 LLAGAPGTGKTALALAVAQELgpkvpfCPIVGSEVYSSEIKKTEVLMENFRRAIGLRI 64
                689*****************99999995555555555555555555544444444444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 5.1
   PF13238.1  11 KtTlakeLaerlgdvlrdla 30 
                 Kt+++++L+ ++  v++ ++
  MMETSP0890-20130614|6694_1 212 KTEITEKLRTEINRVVNRYI 231
                 88999999888744444443 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.021        14      25      45 ..       6      26 ..       2      47 .. 0.84
   2 ?    7.6   0.0     0.003       2.1      94     119 ..     240     265 ..     232     271 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.021
                EEEE-------HHHHHHHHHT CS
  PF00158.21 25 vlitGesGtGKellAraihea 45
                +l+ G  GtGK+ lA a+ ++
  MMETSP0890-20130614|6694_1  6 LLLAGAPGTGKTALALAVAQE 26
                799************998765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.003
                 ---EEEET-----HHHHHHHHHHHH- CS
  PF00158.21  94 gGtLfLDeigelplelQekLlrvlqe 119
                  G+Lf+Dei+ l++e+ + L r+l++
  MMETSP0890-20130614|6694_1 240 PGVLFIDEIHMLDIECFTYLNRALES 265
                 59****************99999987 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   9.1e-05     0.062      49      70 ..       5      26 ..       2      33 .. 0.90
   2 ?   -0.0   0.0      0.65   4.5e+02     132     168 ..     357     390 ..     320     393 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.1e-05
  PF01695.12 49 nlvllGpsGvGKthlAialgve 70
                 l+l G +G+GKt lA a+++e
  MMETSP0890-20130614|6694_1  5 ALLLAGAPGTGKTALALAVAQE 26
                799***************9986 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.65
  PF01695.12 132 ellskryerrsiiltsnlpfsewdevfgdetlatAil 168
                 ++l++ y+r+ i +t    +++ +e+f+d++  +A+l
  MMETSP0890-20130614|6694_1 357 SVLARTYGREQIDIT---DVEQVNELFKDAKASAALL 390
                 688889999999998...5888999999999999987 PP

>> PF03796.10  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.2e-05     0.049      23      74 ..       7      62 ..       2      95 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.2e-05
                EEEESTT---HHHHHHHHHHHHHT-....------EESSS-HHHHHHHHHHHHTT- CS
  PF03796.10 23 iiaaRPsmGKtalalniarnvalke....kkpvlifSlEMsaeqlaerllaaesei 74
                ++a+ P+ GKtalal +a+++  k      +   ++S E ++ ++++    ++  +
  MMETSP0890-20130614|6694_1  7 LLAGAPGTGKTALALAVAQELGPKVpfcpIVGSEVYSSEIKKTEVLMENFRRAIGL 62
                79******************999986665567789999999999887766655544 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.7e-05     0.046       4      26 ..       6      35 ..       3      80 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.7e-05
   PF09848.4  4 ilvtGvaGtGKtvvalnllael.......e 26
                +l  G++GtGKt +al++++el        
  MMETSP0890-20130614|6694_1  6 LLLAGAPGTGKTALALAVAQELgpkvpfcP 35
                6789****************9966555551 PP

>> PF07088.6  GvpD gas vesicle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00057      0.39       9      30 ..       2      23 ..       1      45 [. 0.88
   2 ?   -0.6   0.0      0.42   2.9e+02      58     100 ..     135     177 ..     110     182 .. 0.81
   3 ?   -3.8   0.0       3.9   2.7e+03      93     115 ..     310     334 ..     303     376 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00057
   PF07088.6  9 aGktllikGaPGtGktlftlrg 30
                aG++ll+ GaPGtGkt ++l  
  MMETSP0890-20130614|6694_1  2 AGRALLLAGAPGTGKTALALAV 23
                699*************998865 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.42
   PF07088.6  58 eekssldktaiLDllkDpleleldvdvPiekldldsLlefvde 100
                 ++ +++++t   D +   + le +  vP+ k d++   e  ++
  MMETSP0890-20130614|6694_1 135 ASTGAVKRTGRCDHYAGEFDLEAEDYVPLPKGDVHKKKEVTQD 177
                 356889999999*****************99999987776665 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 3.9
   PF07088.6  93 sLlefvd..einaagerliialDsw 115
                 sL e +d  +i+a +e+l ia D+ 
  MMETSP0890-20130614|6694_1 310 SLAEIIDilAIRAETESLQIAHDAL 334
                 5666666334677888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      495  (0.0362054); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:01.11
# Mc/sec: 859.23
//
Query:       MMETSP0890-20130614|6701_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-14   52.2   0.0    1.4e-13   50.7   0.0    1.8  1  PF05046.9 Mitochondrial large subunit ribosomal protein (Img2)


Domain annotation for each model (and alignments):
>> PF05046.9  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0     1e-17   1.4e-13       1      87 []      59     135 .]      59     135 .] 0.92

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1e-17
   PF05046.9   1 rlsYfvrRkkssnlPVYldvknggtkilTeirkiqGdvsalekdLrsfleeelkkskevnvkelsgkikikGnrveevkkfLeskgf 87 
                 ++++ v R+k + lPVY+++++g  +  T++r++ Gdv+a+ k+L+ +  +e+         +  g+i+ikGn+v++v+++L + gf
  MMETSP0890-20130614|6701_1  59 NYPFAVLRSKAEWLPVYTRYRQG--HPFTLVRHVIGDVDAFAKELHHITDTEP--------IKRLGTIEIKGNHVRHVRRWLTHLGF 135
                 689*******************6..899*****************98875544........5788*****************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.30s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 399.39
//
Query:       MMETSP0890-20130614|6698_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   21.5   0.6    0.00011   21.5   0.4    3.6  3  PF08159.7 NUC153 domain


Domain annotation for each model (and alignments):
>> PF08159.7  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4     0.027   3.6e+02       1       6 [.      19      24 ..      19      24 .. 0.93
   2 ?   -1.9   0.0      0.17   2.4e+03       1      13 [.      35      47 ..      35      49 .. 0.76
   3 !   21.5   0.4   8.2e-09   0.00011       1      28 [.     499     527 ..     499     529 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.027
   PF08159.7  1 DdRFka 6 
                D+RFk+
  MMETSP0890-20130614|6698_1 19 DPRFKK 24
                9****7 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.17
   PF08159.7  1 DdRFkalFedpdF 13
                D RF+a  +d++F
  MMETSP0890-20130614|6698_1 35 DARFAAALTDDNF 47
                88**997777776 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 8.2e-09
   PF08159.7   1 DdRFk.alFedpdFaiDetspeFkklnps 28 
                 D+RF+ al +d+ Fa+D+ +peFk ++ +
  MMETSP0890-20130614|6698_1 499 DNRFAnALENDHRFAVDPANPEFKETAVM 527
                 7888734667899************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.97
# Mc/sec: 1356.29
//
Query:       MMETSP0890-20130614|6708_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 824.35
//
Query:       MMETSP0890-20130614|6707_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-30  104.4   9.9      9e-30  103.4   6.9    1.5  1  PF01694.17 Rhomboid family


Domain annotation for each model (and alignments):
>> PF01694.17  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   6.9   6.6e-34     9e-30       3     143 ..     643     795 ..     641     798 .. 0.85

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 6.6e-34
                 GCC-TTHHHHGGG--S.HHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHH---HHHHH----..-------HHHH---CCCHHHCCTTS.......--------HCCCCCHHH.----S---.............HH-------HHHHHHHH CS
  PF01694.17   3 kkgelwrlltsmflHagvlHllfNmlallvfGiplerelGsvrflllYllsglagsllsslfspagsplvGaSgaifgllgallvllllnrkqlra..ipaallllliiiainlllgflpgidnfa.............HlgGfivGlllgflllk 143
                 +++++wr++ + f+H++ +H+ fN+l++l +G+ple ++G+ r++l+Y ls+++g+++++++ p   ++vGaSg++++l+g++l + +ln+++l +       ++ ++i+ai + + +++ i+ ++             H+gGfi+Gl+l++++l 
  MMETSP0890-20130614|6707_1 643 YRRQVWRYIGYQFVHSNGAHITFNALVQLLVGTPLELVHGFYRIGLIYQLSVIIGAFMVVVVRPTD-VVVGASGGVYALFGIHLGHTILNWNELTRglL--NRWTRILILAIFIGIDTAIAIQDSGsgednrartsyaaHVGGFIAGLFLSIWILH 795
                 689***************************************************************.***************************98553..33333333333333333555555555588888888888***********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:01.21
# Mc/sec: 1782.41
//
Query:       MMETSP0890-20130614|6713_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.6   1.4      0.063   13.2   0.6    1.4  1  PF11233.3 Protein of unknown function (DUF3035)


Domain annotation for each model (and alignments):
>> PF11233.3  Protein of unknown function (DUF3035)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   4.6e-06     0.063      68     135 ..      54     120 ..      42     130 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.6e-06
   PF11233.3  68 aaaaasgaagasageaaLlaaagragadpnIRatvaaedaelrrkdkrfadellfwrdeykeayrkqa 135
                 ++++++     sa+  ++  +++ +++d  IR+t+ aed    r ++r+++++  w + y + yr++ 
  MMETSP0890-20130614|6713_1  54 KTLTKKRRIHSSAAKIKIHRHVSSQEQDTIIRNTTSAEDFTKLRTRSRLNNQRHRW-NAYVDFYRQKD 120
                 55667777889999999***************************************.55888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 563.35
//
Query:       MMETSP0890-20130614|6712_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.79
# Mc/sec: 1346.81
//
Query:       MMETSP0890-20130614|6715_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       761  (0.0556612); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.77
# Mc/sec: 1303.99
//
Query:       MMETSP0890-20130614|6718_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-28   98.1   0.0    1.1e-13   50.3   0.0    2.1  2  PF01150.12 GDA1/CD39 (nucleoside phosphatase) family


Domain annotation for each model (and alignments):
>> PF01150.12  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   8.1e-18   1.1e-13      91     184 ..      19     114 ..      11     122 .. 0.88
   2 !   46.0   0.0   1.7e-16   2.3e-12     213     431 ..     118     325 ..     115     330 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 8.1e-18
  PF01150.12  91 vllgATAGlRl.lkeeakekilkalrnklkkasefkvedqgvriidGaeEGlyawitvNYllgrlgkeaveq.skqktvgvidlGGaStQiaFalq 184
                 +l+  T G+R+ l+ e++  +l++l  +l+++  +  + +++ ii G  E +ya+ + N+l  +l+++ +++ +++++ g++dlGG StQi++  +
  MMETSP0890-20130614|6718_1  19 ILIRCTGGVRDeLEIEEQMEMLDHLFFGLQSHGILLKDRNQIDIISGYDEAAYAFNAANFLEKKLDHKLQKVqKNEELNGALDLGGSSTQITYLNN 114
                 67999*****869999**************988888888***************************9986651566789*************9765 PP

  == domain 2    score: 46.0 bits;  conditional E-value: 1.7e-16
  PF01150.12 213 yvvsfLgyGanealrkylaklisnaeeekgrilsdpClpkglnktvevseve.....ekvfkirgkgnyeqCsksikellnknkvcneeqClfngvhapsidaeqkkigassyfyttgdflklvseve....vakkekltkkikeacsesweqikssakktkeknvseelkeacfklayvlslLhdgFsldkeveliqsvkkieeseiawtlGavlellsalplqkke 431
                 +  s+ g+G ++a r+ l+  +         i +dpC+++g    v  ++++      +     ++   +qC+  +++     + c  e+ +++ + +p+  +  +++  +++fy + +     +e           +l++k++ +c+  w+q+ ++++++++   ++ l   cf++a vl +L+d + ld+ +      ++  + e+ wtlG+ l++l++++  + +
  MMETSP0890-20130614|6718_1 118 FAQSYAGLG-AQAVRARLKVNM---------IDNDPCAHRGDG--VGTGNLDacihtIRRLILSDNERLQQCNTAVEDTER-RNACAVEPWRYE-IPEPK--SSIRFLAMCNFFYAADAIRSFSAEPLegwpTPALSDLEEKARTFCALPWHQVRQQFSGKHHYTSDSLLSSRCFDAALVLFILRDVYALDQVTF---LLETQSGLEVEWTLGYFLDHLRQQQD-NTC 325
                 556666666.555555444322.........236899999853..444555544554555566778889999999999887.778999888774.77777..9**************88888777765689888899*********************98877666655**********************9933...334445679************99877.445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.72
# Mc/sec: 1268.07
//
Query:       MMETSP0890-20130614|6716_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.7   0.4       0.45   10.5   0.0    1.7  2  PF03862.8 SpoVA protein


Domain annotation for each model (and alignments):
>> PF03862.8  SpoVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.24   3.3e+03      95     117 ..      47      69 ..      39      74 .. 0.69
   2 ?   10.5   0.0   3.3e-05      0.45      62      82 ..     159     179 ..     156     182 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.24
   PF03862.8  95 aklfkiagavivagivfsyival 117
                  ++f+++  ++  g ++s ++al
  MMETSP0890-20130614|6716_1  47 LRVFQVTRNTFESGALTSAFIAL 69 
                 45677777777777777666666 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.3e-05
   PF03862.8  62 agAGatvPitgFanslvkgai 82 
                 +g+G+t+P tgF+ns ++g +
  MMETSP0890-20130614|6716_1 159 SGSGSTLPNTGFGNSTAQGRM 179
                 699**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 644.90
//
Query:       MMETSP0890-20130614|6722_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   23.9   0.7      2e-05   23.6   0.5    1.1  1  PF07466.6 Protein of unknown function (DUF1517)
  ------ inclusion threshold ------
        5.7    5.6  13.0       0.53    9.0   5.8    1.6  2  PF14362.1 Domain of unknown function (DUF4407)
        9.1    4.6  11.6         19    3.5   8.0    1.6  1  PF04375.9 HemX


Domain annotation for each model (and alignments):
>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.5   4.4e-09     2e-05       2     120 ..      43     152 ..      42     162 .. 0.66

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.4e-09
   PF07466.6   2 aasGGriGGgsfrapsrssssprssspsgggygsssssygggysgggfgfpflipifgfGggflglfgllilvaivgvlvnalrsaggge.egessaeasndkvsvvklqvgLlasakel 120
                 ++sGGr GG+ f  p r+ s  r+ + + +   +++   ++   +++     ++   g Ggg   + ++l+ + i+ ++++  r+a+    ++e+++e  ++++++++l+  L a+ k++
  MMETSP0890-20130614|6722_1  43 RKSGGRAGGNGFA-PKRRQSVTRRDATATKDAPTKE---SS---APTNTHTTVVMQQGYGGG---MGTALMGLSIMDAIIQEQRRAEMMRiQYEQQKELGKNSAELASLKAQLEAQEKKV 152
                 79**********9.9899999988777666655333...22...222222333333444443...3355555666666677777666655688999999999999999999999998887 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.25   1.1e+03     180     201 ..      54      75 ..      28      89 .. 0.49
   2 ?    9.0   5.8   0.00012      0.53     114     168 ..     108     162 ..     106     163 .] 0.95

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.25
   PF14362.1 180 kGpvykekkealdaaqaeletl 201
                   p  ++  + +da  ++ + +
  MMETSP0890-20130614|6722_1  54 FAPKRRQSVTRRDATATKDAPT 75 
                 2233333333333333333333 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00012
   PF14362.1 114 lkekqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqce 168
                 ++++ qe+ +a + +++  ++++l+++ ae+a+l+a+l++++++v ++++++++e
  MMETSP0890-20130614|6722_1 108 MDAIIQEQRRAEMMRIQYEQQKELGKNSAELASLKAQLEAQEKKVSEMQAQAEKE 162
                 78899*********************************************99988 PP

>> PF04375.9  HemX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   8.0    0.0042        19      76     122 ..     113     158 ..      54     163 .] 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0042
   PF04375.9  76 keaqlkqeleklirdnqealeqlekkleqldksleelqdkvaalega 122
                 +e q+++e+++++ ++q+ l +   +l+ l+++le+  +kv++++++
  MMETSP0890-20130614|6722_1 113 QE-QRRAEMMRIQYEQQKELGKNSAELASLKAQLEAQEKKVSEMQAQ 158
                 33.78888888888888888888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1483  (0.10847); expected 273.4 (0.02)
Passed bias filter:                      755  (0.0552224); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.70
# Mc/sec: 558.01
//
Query:       MMETSP0890-20130614|6726_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.83
# Mc/sec: 164.57
//
Query:       MMETSP0890-20130614|6725_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:01.01
# Mc/sec: 481.64
//
Query:       MMETSP0890-20130614|6734_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.3  15.1      0.062   11.5  10.4    1.4  1  PF05793.7 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
       0.29   10.4   6.1       0.73    9.1   4.2    1.7  1  PF11947.3 Protein of unknown function (DUF3464)


Domain annotation for each model (and alignments):
>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  10.4     9e-06     0.062     306     385 ..     166     242 ..     134     260 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05793.7 306 eEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekk 385
                   + + +++  d++++e e+e++++ +++ +++k++kkl kkkk+k k++   ++ ++d+D  +    ++v   K   kk
  MMETSP0890-20130614|6734_1 166 SIDYPDNDNIADDQNDEVEDEQAKKYDNERRERKRLKKLAKKKKKK-KREK--DDADEDNDCPSVVRDTMVVSAKAVVKK 242
                 3344444445567777778888888888888888888766665555.3333..223333333333333333333333322 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.2   0.00011      0.73      13      64 ..     186     234 ..     171     248 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00011
   PF11947.3  13 kkkrkkaekklrktaeteka.ekksaskekkkkkkdekeeeaIPevVadRmir 64 
                 ++++    k  +++ e +++ + ++++k+kk++k d++e++  P+vV d m++
  MMETSP0890-20130614|6734_1 186 EQAK----KYDNERRERKRLkKLAKKKKKKKREKDDADEDNDCPSVVRDTMVV 234
                 2222....22222222222313355555556666688999***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1618  (0.118344); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.21s 00:00:00.93 Elapsed: 00:00:00.92
# Mc/sec: 823.10
//
Query:       MMETSP0890-20130614|6735_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-17   64.0   0.0    2.7e-17   63.1   0.0    1.4  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0     2e-21   2.7e-17       2     155 ..      84     266 ..      83     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 2e-21
                 EEEEE---BHCCCTTB..........GGGTCC...........--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHHHCCCCE........EEEEE.GGGSHHHH.----.TTCHHHHHHHHH..CHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHH CS
  PF00300.17   2 lylvRHGeselnkegr..........lqgwsd...........vpLtekGreqarelgkkLkradlqidavytSplkRaiqTaeilleeld........ipiiqeprLrerdf.gewe.glpkaevkeelp..eeyekwkrdkkefrppegesladvyeRvapfleelieakdkgenvlivsHggvl 155
                 ++++RHG+  +n  g           ++g  d           +pLt+ Gr+qa+ l    +  +l+id v++Spl Ra+qTa++ + +l+        +p i  +++ e +    ++ +++ka++++ +p  +  +   +++ +++ +  e+++ v +R ++fl +l   ++++ ++ +v+H ++l
  MMETSP0890-20130614|6735_1  84 VHFIRHGQGFHNLLGDlyrdfgvevdSTGADDcgpyrrpeivdPPLTAIGRDQAKVLQPVTA--KLNIDLVVVSPLCRAVQTANLAMPHLRnrgegasvVPWIAREDVAEASGkNLCDkRRDKADIQDDFPhlDLSDLVSEEDARWSADARETAKSVSDRGHAFLLWLR--TRPESQITVVTHSAWL 266
                 789*****9988444444455555554444445555566666358*************8877..9********************77766678899999*************9667788************875555555677888888999*****************..8***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1042.92
//
Query:       MMETSP0890-20130614|6733_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.5   0.0    3.7e-07   29.7   0.0    2.4  2  PF00620.22 RhoGAP domain


Domain annotation for each model (and alignments):
>> PF00620.22  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.2e-11   9.9e-07       3      67 ..      39     107 ..      38     109 .. 0.93
   2 !   29.7   0.0   2.7e-11   3.7e-07     114     148 ..     116     150 ..     114     154 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 7.2e-11
                 HHHHHHHHHHHH-TT-TTTTSS---HHHHHHHHHHHHH----S.....CCCSS-HHHHHHHHHHHHHHS CS
  PF00620.22   3 ivekcvefiekrgldtegiyRvsgsksrvkelreafergkavde....dleeedvhavasvLKrfLrel 67 
                 i++++++ +ek+ l+ +g++Rv+g+++ ++     +erg+++d+       +e   a+as+LK++  +l
  MMETSP0890-20130614|6733_1  39 ILRSLMSVLEKKHLKRDGLFRVPGNAEAINDANGLLERGEDPDLvvasVDADEGADALASLLKKWTGKL 107
                 8999**************************************99**99888899*********997665 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 2.7e-11
                 HHHHHHHHHCTHHHH---HHHHHHHHHHHHCT-ST CS
  PF00620.22 114 LlehLkrvaenseenkMtaenLaivfaPtLlrpks 148
                 L+e+L +va+ se+n+M a+nLa+vf+P + +p++
  MMETSP0890-20130614|6733_1 116 LVEFLAKVADESESNRMPARNLATVFGPIFAPPPT 150
                 89**************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       623  (0.0455676); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.45s 00:00:01.15 Elapsed: 00:00:01.08
# Mc/sec: 725.56
//
Query:       MMETSP0890-20130614|6741_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   11.5   0.0       0.15   10.5   0.0    1.4  2  PF04559.7 Herpesvirus UL17 protein


Domain annotation for each model (and alignments):
>> PF04559.7  Herpesvirus UL17 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0     0.078   1.1e+03     147     175 ..     135     163 ..     112     179 .. 0.76
   2 ?   10.5   0.0   1.1e-05      0.15     289     326 ..     182     219 ..     151     253 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.078
   PF04559.7 147 gtrynadaerlralcrqllaytrlpaalp 175
                  t +n+ ++  + l ++++ay++++++++
  MMETSP0890-20130614|6741_1 135 ATPMNNIEKAKQDLMQRFHAYNKRQHDIN 163
                 57889999999999999999997777664 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 1.1e-05
   PF04559.7 289 aggdtpadawrrgpisivpvqhvetgkrfvvvsYenss 326
                 + gd  +++w+ +p+si +++ ++ g++f vv+ ++s+
  MMETSP0890-20130614|6741_1 182 PVGDDKEHLWTHRPLSIPTRSSFNKGEKFTVVAFHRSV 219
                 4588999***************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.85
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|6742_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 365.16
//
Query:       MMETSP0890-20130614|6745_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.89
# Mc/sec: 939.70
//
Query:       MMETSP0890-20130614|6743_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1380  (0.100936); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.96
# Mc/sec: 1857.18
//
Query:       MMETSP0890-20130614|6748_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-07   30.4  15.4    7.1e-07   28.8  10.7    1.9  1  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8  10.7   5.2e-11   7.1e-07       4      40 .]     521     553 ..     514     553 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.2e-11
                 T--.B----EE----S--EESSHHHHHHHHHHHTTTH CS
  PF01753.13   4 CgkaealkllrCsgCksvkYCskeCQradwkeHkkeC 40 
                 C k   +k  +C  Ck v YC++eCQ+a+wkeHk+eC
  MMETSP0890-20130614|6748_1 521 CTK-MGQK--KC-VCKLVSYCGTECQKAHWKEHKREC 553
                 666.7777..9*.8*********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       913  (0.0667788); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:01.42
# Mc/sec: 963.61
//
Query:       MMETSP0890-20130614|6757_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.7   0.2       0.15   12.1   0.1    1.5  1  PF06480.10 FtsH Extracellular


Domain annotation for each model (and alignments):
>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05      0.15      15      87 ..      64     113 ..      21     124 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
  PF06480.10  15 lnslfggsgtgspkeisyseFledleagnvskvvvdestispalirrptgdgvsktkkgnstttyytptlgsv 87 
                 ln    ++ t +++++ +s+Fl+ +e+g+v+  v +                   t++++s +++ ++    +
  MMETSP0890-20130614|6757_1  64 LN----LTVTITSRRLQFSTFLAAIEEGEVADTVEV----------------DVETSSPTSAPSFIPTL---T 113
                 33....4444489999**************987555................36777777777776666...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.90
# Mc/sec: 351.47
//
Query:       MMETSP0890-20130614|6754_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-22   78.2   0.0    9.9e-22   77.4   0.0    1.4  1  PF13692.1 Glycosyl transferases group 1
    0.00013   22.0   0.0    0.00077   19.5   0.0    2.3  2  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   1.4e-25   9.9e-22       2     135 .]     269     410 ..     268     410 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 1.4e-25
   PF13692.1   2 llligssgsltndkdleelleealprlreklp...dvelviiGkgpd.....elarllepnveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeeegvgglvaddpeelaealvrlled 135
                 +l++g+  + +n ++++ l++e+lp+++++ +   d+ l+i+G+g +     ++++ ++  v ++gfv +l  +l++ +v++aplr+g+g+++K+  ++  G+Pvva++ + eg+  +++v+++va +   +a+ + +l+ +
  MMETSP0890-20130614|6754_1 269 CLFVGNWEHTPNVDAVQFLIHEILPQIANNSEtpsDFALHIVGAGEPprwmnDIHDIGGIPVVMHGFVKDLGTILQQVRVAVAPLRYGAGVKGKVNSAMIHGVPVVATPMAIEGMFLTPNVDVIVAETGPLFATSILDLYLN 410
                 689************************987644468********75545443366665559999************************************************************************999975 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.42   2.9e+03       4      31 ..     111     145 ..     109     164 .. 0.74
   2 !   19.5   0.0   1.1e-07   0.00077       3      84 ..     350     432 ..     348     443 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.42
   PF13524.1   4 npsrsespnl..rlfEaaacGtpvvtddt.....s 31 
                 ++sr++s+ +   l+E   + tp+v d +      
  MMETSP0890-20130614|6754_1 111 FVSRRNSFAMwkPLLEHTCFKTPIVFDTVdlhflR 145
                 67899999999999999999999999955554444 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.1e-07
   PF13524.1   3 Lnpsrs.espnlrlfEaaacGtpvvtddtsgleel.fepgkeivlfedleelaeklryllanpeereaiaeaarervlaehtye 84 
                 ++p r+ +++++++  a+ +G+pvv++ + ++e++ ++p+ +++++e+   +a  +  l+ n +++ +i++aa   v++++++ 
  MMETSP0890-20130614|6754_1 350 VAPLRYgAGVKGKVNSAMIHGVPVVAT-PMAIEGMfLTPNVDVIVAETGPLFATSILDLYLNYDLWMKIRTAAFLNVKKHFSVS 432
                 5677776779*****************.6788887589999*************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:01.11
# Mc/sec: 1735.74
//
Query:       MMETSP0890-20130614|6752_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-33  114.9   0.4    1.9e-33  114.2   0.3    1.3  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
       0.04   13.8   0.1       0.08   12.9   0.0    1.5  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
       0.08   12.6   0.1       0.18   11.4   0.0    1.6  2  PF02291.10 Transcription initiation factor IID, 31kD subunit


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.3   4.1e-37   1.9e-33       1      75 []      58     132 ..      58     132 .. 0.99

  Alignments for each domain:
  == domain 1    score: 114.2 bits;  conditional E-value: 4.1e-37
  PF00125.19   1 ssdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75 
                 s++lli+klp++R+vre+ ++f+ +lr++++a++alqea+e++l+ ++ed++l+a+hakr+ti+p+diqlA+r++
  MMETSP0890-20130614|6752_1  58 STELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
                 799**********************************************************************97 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05      0.08       2      64 ..      65     128 ..      64     128 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-05
                 ---HHHHHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHH CS
  PF00808.18   2 eLPiarvkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaedikla 64 
                 +LP  r  + + +d + + ++ + A   ++e++e ++  l + ++  + ++kr Ti+++di+la
  MMETSP0890-20130614|6752_1  65 KLPFQRLVREIAQDfKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
                 788888777777777999999999*************************************997 PP

>> PF02291.10  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.6   2.7e+03      78      98 ..       8      28 ..       3      37 .. 0.67
   2 ?   11.4   0.0     4e-05      0.18      29      75 ..      84     130 ..      64     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.6
                --XXXXXXXXXXXXXXXXXXX CS
  PF02291.10 78 ldksftgppprelllqlAaer 98
                + ks+ g +pr+ l+  Aa +
  MMETSP0890-20130614|6752_1  8 ARKSTGGKAPRKQLATKAARK 28
                556677777777776666554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4e-05
                 -B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS
  PF02291.10  29 eyeprvvlqlldfafrytqkilddakvysehakkanieveDvrlAia 75 
                  ++ + +l l + a +y   +++d++  + hak+ +i   D++lA  
  MMETSP0890-20130614|6752_1  84 RFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130
                 688999999***********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.80
# Mc/sec: 407.38
//
Query:       MMETSP0890-20130614|6758_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       756  (0.0552955); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:01.13
# Mc/sec: 1481.96
//
Query:       MMETSP0890-20130614|6759_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2002  (0.146431); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:01.17
# Mc/sec: 796.74
//
Query:       MMETSP0890-20130614|6766_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   38.0   0.0    1.3e-07   31.3   0.0    2.7  2  PF13041.1  PPR repeat family
    1.4e-09   37.1   0.2     0.0077   16.0   0.0    4.4  4  PF01535.15 PPR repeat
      1e-08   34.6   9.8     0.0023   17.9   0.0    4.9  5  PF13812.1  Pentatricopeptide repeat domain
    5.7e-05   22.3   2.0       0.12   11.7   0.1    3.8  4  PF12854.2  PPR repeat
  ------ inclusion threshold ------
       0.16   11.7   4.0          1    9.2   0.0    2.9  3  PF13424.1  Tetratricopeptide repeat
       0.17   11.9   7.4          2    8.5   0.1    3.0  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.023        53       3      28 ..      67      92 ..      65      94 .. 0.88
   2 !   31.3   0.0   5.7e-11   1.3e-07       3      49 ..     100     149 ..      98     150 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.023
   PF13041.1  3 vvtYNtlIsglckkgkveeAfklfne 28
                   Y +++s+l  +++ +eA+ l++e
  MMETSP0890-20130614|6766_1 67 AYLYVAVLSALEAANRHNEALALLDE 92
                567889*****************987 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 5.7e-11
   PF13041.1   3 vvtYNtlIsglckkgkveeAfklfneMkkr...gikPnvyTYsilikglc 49 
                 v ++N+ ++ ++k+g+v++A+ +++eM+ +   +++P++y+Y + i+++ 
  MMETSP0890-20130614|6766_1 100 VAVFNIGLKLCAKRGDVRKAVAVLDEMRNSndlRCRPDAYSYATAIRACV 149
                 678*************************876668**************96 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.016        37      10      24 ..      36      50 ..      33      54 .. 0.89
   2 !    5.8   0.0    0.0059        13       2      25 ..      69      92 ..      68      94 .. 0.92
   3 !   16.0   0.0   3.4e-06    0.0077       7      29 ..     107     129 ..     102     131 .. 0.89
   4 !    5.5   0.0    0.0074        17       2      24 ..     140     162 ..     139     168 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.016
  PF01535.15 10 yckaGkleeAlelfk 24
                ++++G+ ++A +++ 
  MMETSP0890-20130614|6766_1 36 CGRCGDADKAKSVLS 50
                89**********986 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0059
  PF01535.15  2 tynslIsgyckaGkleeAlelfke 25
                 y +++s++  a+++ eAl l++e
  MMETSP0890-20130614|6766_1 69 LYVAVLSALEAANRHNEALALLDE 92
                58899*****************98 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 3.4e-06
  PF01535.15   7 IsgyckaGkleeAlelfkeMkek 29 
                 ++ ++k G++++A+ +++eM+ +
  MMETSP0890-20130614|6766_1 107 LKLCAKRGDVRKAVAVLDEMRNS 129
                 5789****************987 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.0074
  PF01535.15   2 tynslIsgyckaGkleeAlelfk 24 
                 +y + I++++ a++ ++Al l+ 
  MMETSP0890-20130614|6766_1 140 SYATAIRACVEARRSRDALNLLS 162
                 89999**************9986 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.26   5.9e+02       9      25 ..      34      50 ..      30      51 .. 0.85
   2 !    7.0   0.1    0.0033       7.5       2      26 ..      68      92 ..      67      94 .. 0.93
   3 !   17.9   0.0     1e-06    0.0023       4      31 ..     103     130 ..     100     136 .. 0.84
   4 !   11.1   0.3   0.00015      0.35       2      25 ..     139     162 ..     138     164 .. 0.93
   5 ?   -2.0   0.0       2.4   5.5e+03       2      11 ..     258     267 ..     257     267 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.26
   PF13812.1  9 talaksgrpeaAlalle 25
                  + ++g+ ++A  +l+
  MMETSP0890-20130614|6766_1 34 ATCGRCGDADKAKSVLS 50
                6799*******998885 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0033
   PF13812.1  2 etyntlitalaksgrpeaAlallee 26
                ++y +++ al  ++r+++Alall+e
  MMETSP0890-20130614|6766_1 68 YLYVAVLSALEAANRHNEALALLDE 92
                78*********************97 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 1e-06
   PF13812.1   4 yntlitalaksgrpeaAlalleeMeqqg 31 
                 +n+ ++ +ak+g++ +A a+l+eM++++
  MMETSP0890-20130614|6766_1 103 FNIGLKLCAKRGDVRKAVAVLDEMRNSN 130
                 6666899******************986 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.00015
   PF13812.1   2 etyntlitalaksgrpeaAlalle 25 
                 ++y+t i+a++++ r  +Al ll+
  MMETSP0890-20130614|6766_1 139 YSYATAIRACVEARRSRDALNLLS 162
                 89******************9986 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 2.4
   PF13812.1   2 etyntlital 11 
                 etyn  ++a+
  MMETSP0890-20130614|6766_1 258 ETYNLYVRAH 267
                 89**999985 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.97   2.2e+03      19      30 ..      38      49 ..      37      50 .. 0.87
   2 ?    2.3   0.0     0.046   1.1e+02      20      32 ..      80      92 ..      74      94 .. 0.92
   3 !   11.7   0.1   5.2e-05      0.12      19      34 .]     112     127 ..      98     127 .. 0.88
   4 !    5.2   0.0    0.0058        13       3      29 ..     134     160 ..     132     162 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.97
   PF12854.2 19 raGrvdeAvell 30
                r G+ d+A  +l
  MMETSP0890-20130614|6766_1 38 RCGDADKAKSVL 49
                789*****9987 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.046
   PF12854.2 20 aGrvdeAvellde 32
                a+r +eA+ llde
  MMETSP0890-20130614|6766_1 80 ANRHNEALALLDE 92
                6899********9 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 5.2e-05
   PF12854.2  19 raGrvdeAvelldeMe 34 
                 + G+v +Av +ldeM+
  MMETSP0890-20130614|6766_1 112 KRGDVRKAVAVLDEMR 127
                 89*************7 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0058
   PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvel 29 
                 ++Pd+++Y t I +   a r  +A+ l
  MMETSP0890-20130614|6766_1 134 CRPDAYSYATAIRACVEARRSRDALNL 160
                 9*********99886666666666555 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.9    0.0029       6.5      16      71 ..      37      92 ..      25      93 .. 0.79
   2 ?    9.2   0.0   0.00045         1      23      69 ..      78     123 ..      75     127 .. 0.87
   3 ?    3.7   0.1     0.024        54       9      73 ..     103     165 ..      95     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0029
   PF13424.1 16 rrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylek 71
                 r gd d+A + +  a    +r++    p  a ++     +++a++++ eAl++l +
  MMETSP0890-20130614|6766_1 37 GRCGDADKAKSVLSLAKLRaARRASASWPS-AYLYVAVLSALEAANRHNEALALLDE 92
                5889********999998877777777776.888888888899999******99976 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00045
   PF13424.1  23 eAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                 eA +  ++al+ll e++++++ +a+    l  l++++gd  +A++ l
  MMETSP0890-20130614|6766_1  78 EAANRHNEALALLDEVPPASLTVAVFNIGL-KLCAKRGDVRKAVAVL 123
                 788889**************9888777777.8999********9987 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.024
   PF13424.1   9 nnlalvlr.rlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                 +n++l l+ + gd  +A + + +  +      +  pd a ++    ++++++ +  +Al++l  Al
  MMETSP0890-20130614|6766_1 103 FNIGLKLCaKRGDVRKAVAVLDEMRNSN--DLRCRPD-AYSYATAIRACVEARRSRDALNLLSLAL 165
                 5777666668888888888888777662..2235677.8888888888888888888888887776 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.1    0.0053        12      37      83 ..      38      92 ..       1      93 [. 0.65
   2 ?    8.5   0.1   0.00087         2      37      81 ..     112     161 ..     106     164 .. 0.89
   3 ?   -3.2   0.0       3.9   8.9e+03      18      33 ..     324     338 ..     315     339 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0053
                H---HHHHHHHHHC.....TSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHHH CS
   PF12895.2 37 lngeykrAyellrk.....leldssslgcryll.A..rcllklgkydeAiavLek 83
                + g+ ++A  +l+          s s  ++yl+ A   +l++ ++++eA+a+L++
  MMETSP0890-20130614|6766_1 38 RCGDADKAKSVLSLaklraARRASASWPSAYLYvAvlSALEAANRHNEALALLDE 92
                56777777777755445433333344788899989989999***********987 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00087
                 H---HHHHHHHHHC....TSHCHCBHHHHHHHH.HHHHHTT-HHHHCCCH CS
   PF12895.2  37 lngeykrAyellrk....leldssslgcryllA.rcllklgkydeAiavL 81 
                 + g+ ++A+ +l++    ++l+++ ++++y  A r++++  +  +A+++L
  MMETSP0890-20130614|6766_1 112 KRGDVRKAVAVLDEmrnsNDLRCRPDAYSYATAiRACVEARRSRDALNLL 161
                 67999*******9999999999988999999978*************998 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.9
                 C-ST-H.HHHCHHHHHH CS
   PF12895.2  18 espkdp.edaylyalAl 33 
                  ++ d+ + ++ly  A+
  MMETSP0890-20130614|6766_1 324 DDDDDDdDPDFLY--AE 338
                 4443334666888..65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.73
# Mc/sec: 1116.11
//
Query:       MMETSP0890-20130614|6764_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-17   63.4   7.1    2.9e-17   62.9   4.9    1.2  1  PF01694.17 Rhomboid family
  ------ inclusion threshold ------
          5    6.7   7.2       0.97    9.0   0.2    3.1  4  PF14241.1  Domain of unknown function (DUF4341)


Domain annotation for each model (and alignments):
>> PF01694.17  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   4.9   4.2e-21   2.9e-17       7     145 ..      48     211 ..      43     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 4.2e-21
                 TTHHHHGGG--S.HHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHH---HHHHH----............-------HHHH---CCCHHHCCTTS.....--------HCCCCCHHH.----S---....................HH-------HHHHHHHHHH CS
  PF01694.17   7 lwrlltsmflHagvlHllfNmlallvfGiplerelGsvrflllYllsglagsllsslfspags..........plvGaSgaifgllgallvllllnrkqlraipaallllliiiainlllgflpgidnfa....................HlgGfivGlllgflllkrp 145
                  ++lltsmf+H +  Hll Nm+ l++fG+++   +G   fl lY  +g+++s+ +++ + + +            +GaSga+ + ++  ++  +++ + ++a      +l i ++++l+ gf +g d +a                    H++G++ G++  +l+++ p
  MMETSP0890-20130614|6764_1  48 PHTLLTSMFSHNDGYHLLGNMITLFFFGPEVVYAIGARAFLGLYGGAGIVSSICQIANDMSRNarmsyfrvtqRYLGASGAVNAAVAWSILANPWRLIIVFA-----EILPIPLPAILYGGFYIGKDVAAlinvhlpyisdrgagvahgaHVAGAACGVAHFLLFRRPP 211
                 6789*****************************************************99999999*******99*********9888877777777555554.....333333555555555555555555555566677777999*************9999888765 PP

>> PF14241.1  Domain of unknown function (DUF4341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.3   8.6e+03       6      11 ..       9      14 ..       6      18 .. 0.59
   2 ?   -0.3   0.0      0.12   7.9e+02      29      39 ..      93     103 ..      81     118 .. 0.67
   3 ?    9.0   0.2   0.00014      0.97      23      51 ..     119     147 ..     111     152 .. 0.86
   4 ?   -0.7   0.0      0.15     1e+03       5      20 ..     159     174 ..     155     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.3
   PF14241.1  6 laGGlL 11
                ++GGl+
  MMETSP0890-20130614|6764_1  9 VVGGLI 14
                455543 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.12
   PF14241.1  29 iSGilggllap 39 
                   Gi++++++ 
  MMETSP0890-20130614|6764_1  93 GAGIVSSICQI 103
                 35888888887 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00014
   PF14241.1  23 nGriaGiSGilggllapekpdrawrlafl 51 
                 + r++G+SG ++ ++a++   + wrl ++
  MMETSP0890-20130614|6764_1 119 TQRYLGASGAVNAAVAWSILANPWRLIIV 147
                 569*************9999999999887 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.15
   PF14241.1   5 alaGGlLiGlaavlll 20 
                  l GG+ iG  +++l+
  MMETSP0890-20130614|6764_1 159 ILYGGFYIGKDVAALI 174
                 578******9888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.98
# Mc/sec: 533.07
//
Query:       MMETSP0890-20130614|6765_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-12   44.7  11.7     0.0004   19.6   0.3    4.3  4  PF00132.19 Bacterial transferase hexapeptide (six repeats)
    0.00074   18.0   0.2    0.00095   17.7   0.1    1.2  1  PF07959.7  L-fucokinase


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.3e-05     0.091       6      36 .]      12      42 ..      11      42 .. 0.93
   2 ?    1.1   0.2     0.041   2.8e+02       3      16 ..      48      61 ..      45      63 .. 0.60
   3 !   17.4   0.1   2.8e-07    0.0019      18      35 ..      73      90 ..      68      91 .. 0.85
   4 !   19.6   0.3   5.9e-08    0.0004       2      34 ..      92     124 ..      91     125 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
                TTEEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19  6 envlIgpnvvigggviIGdnviIgagvvigg 36
                ++++I pn+ ++g+v I   + I+  +v++g
  MMETSP0890-20130614|6765_1 12 NDTWIAPNAAVIGDVLINYESSIWYRSVVRG 42
                89***************99999999999986 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.041
                EE-TTEEE-TTEEE CS
  PF00132.19  3 vIGenvlIgpnvvi 16
                vIG  + I   +vi
  MMETSP0890-20130614|6765_1 48 VIGAVTNIQEKCVI 61
                56666666665555 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 2.8e-07
                SSEBE-TTEEE-TTEEEE CS
  PF00132.19 18 ggviIGdnviIgagvvig 35
                + ++IGdn+ Igag+v++
  MMETSP0890-20130614|6765_1 73 ATCEIGDNTSIGAGSVLR 90
                679*************86 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 5.9e-08
                 EEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
  PF00132.19   2 tvIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                 ++IG+ v Ig  ++i++g+iI d++i+ +g+ +
  MMETSP0890-20130614|6765_1  92 CKIGSQVDIGDACIILDGAIIEDGAILEPGSLV 124
                 89999999*******************999976 PP

>> PF07959.7  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.4e-07   0.00095     263     318 ..      53     108 ..      36     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.4e-07
   PF07959.7 263 rklssspaieveliaatsvilsslleskvsvgedsvvedsrlggevriGsqcivsg 318
                  +++   +i+  ++  + +  ++++  + s+g +sv+  +++g +v iG+ ci+  
  MMETSP0890-20130614|6765_1  53 TNIQEKCVIDTVPSLDSGFPATCEIGDNTSIGAGSVLRSCKIGSQVDIGDACIILD 108
                 5566666666677778888899*******************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 625.14
//
Query:       MMETSP0890-20130614|6763_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-18   65.1   2.6    1.6e-15   56.3   0.7    2.8  3  PF13414.1  TPR repeat
    6.8e-13   47.5   2.8     0.0047   16.3   0.1    3.7  3  PF00515.23 Tetratricopeptide repeat
    3.4e-12   45.1   4.0     0.0026   17.4   0.0    3.7  3  PF07719.12 Tetratricopeptide repeat
    1.6e-08   33.9   2.5     0.0003   20.6   0.1    3.1  3  PF13431.1  Tetratricopeptide repeat
    3.1e-07   30.7   0.5     0.0054   17.1   0.0    3.1  3  PF04969.11 CS domain
    6.9e-06   26.4   4.9    8.8e-05   22.9   0.2    2.8  2  PF13432.1  Tetratricopeptide repeat
    3.2e-05   23.8   1.9    3.2e-05   23.8   1.3    1.9  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    6.7e-05   22.2   5.2       0.29   10.8   0.1    3.8  3  PF13181.1  Tetratricopeptide repeat
    0.00016   21.9   1.0      0.036   14.5   0.2    3.6  3  PF13428.1  Tetratricopeptide repeat
    0.00069   19.3   6.4      0.039   13.7   0.3    2.8  2  PF13424.1  Tetratricopeptide repeat
     0.0014   18.1   4.9      0.062   13.0   0.1    3.4  2  PF13176.1  Tetratricopeptide repeat
     0.0035   17.0   4.3      0.039   13.6   0.7    2.7  2  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   14.1   0.3      0.022   13.4   0.2    1.3  1  PF09295.5  ChAPs (Chs5p-Arf1p-binding proteins)
       0.06   13.1   0.5       0.36   10.6   0.2    2.5  2  PF13371.1  Tetratricopeptide repeat
       0.37   11.2   7.4          2    8.9   0.0    4.0  3  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.7   1.7e-18   1.6e-15       9      68 ..      82     140 ..      77     141 .. 0.95
   2 !   16.8   0.0   3.7e-06    0.0034      28      62 ..     135     168 ..     134     170 .. 0.92
   3 ?   -3.0   0.1       5.7   5.2e+03      51      51 ..     353     353 ..     337     368 .. 0.47

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.7e-18
   PF13414.1   9 lGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 +Gn+++ +++y +A+e+y+ A+e dp +a++y+n+A+a+l lg+ +++A+ed+++++++d
  MMETSP0890-20130614|6763_1  82 EGNKYYAKKQYRKAVEEYSFAIEADPYDASVYSNRAQAWLSLGQ-WQSAREDADECVRID 140
                 8******************************************5.79**********998 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 3.7e-06
   PF13414.1  28 kAleldpnnaelyynlAlaylklgkdyeeAledye 62 
                 +++++d+ n + +y+lA+a++kl  dye+A+  ++
  MMETSP0890-20130614|6763_1 135 ECVRIDSTNLKGWYRLAKAFEKLE-DYEQAISICD 168
                 899*******************97.8*****9887 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 5.7
   PF13414.1  51 g 51 
                  
  MMETSP0890-20130614|6763_1 353 A 353
                 2 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   3.6e-05     0.033       8      33 ..      83     108 ..      78     109 .. 0.94
   2 !   15.2   0.0   1.1e-05      0.01       1      34 []     110     143 ..     110     143 .. 0.95
   3 !   16.3   0.1   5.2e-06    0.0047       2      21 ..     145     164 ..     144     168 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.6e-05
                 HHHHHHTT-HHHHHHHHHHHHHHHTT CS
  PF00515.23   8 GnaylklgkydeAleyyekALelnPn 33 
                 Gn y+ +++y +A+e y+ A+e +P 
  MMETSP0890-20130614|6763_1  83 GNKYYAKKQYRKAVEEYSFAIEADPY 108
                 99**********************96 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                 a ++ n+++a l+lg+++ A e+ +++++++ +n
  MMETSP0890-20130614|6763_1 110 ASVYSNRAQAWLSLGQWQSAREDADECVRIDSTN 143
                 679****************************987 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 5.2e-06
                 HHHHHHHHHHHHTT-HHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAl 21 
                 k +y+l+ a+ kl++y++A+
  MMETSP0890-20130614|6763_1 145 KGWYRLAKAFEKLEDYEQAI 164
                 68*****************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.7   5.1e-05     0.046       2      32 ..      77     107 ..      76     109 .. 0.92
   2 !   17.4   0.0   2.9e-06    0.0026       2      34 .]     111     143 ..     110     143 .. 0.94
   3 !   13.0   0.1     7e-05     0.064       2      21 ..     145     164 ..     144     169 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 e++ + G+ yy++++y +A+e +  A+e dP
  MMETSP0890-20130614|6763_1  77 EWHRCEGNKYYAKKQYRKAVEEYSFAIEADP 107
                 799********************99999998 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++ n+++a++ lg+++ A+e+ ++++++d +n
  MMETSP0890-20130614|6763_1 111 SVYSNRAQAWLSLGQWQSAREDADECVRIDSTN 143
                 689**************************9886 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHTT-HHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAl 21 
                 +++y+l++a +kl dye+A+
  MMETSP0890-20130614|6763_1 145 KGWYRLAKAFEKLEDYEQAI 164
                 58*****************9 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       9.3   8.5e+03      23      33 ..      86      96 ..      83      97 .. 0.75
   2 !   20.6   0.1   3.3e-07    0.0003       5      34 .]     102     131 ..     102     131 .. 0.96
   3 !   12.2   0.0   0.00017      0.15       4      33 ..     135     164 ..     133     165 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 9.3
   PF13431.1 23 llnnGdleeAe 33
                +++++++++A 
  MMETSP0890-20130614|6763_1 86 YYAKKQYRKAV 96
                88889999886 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.3e-07
   PF13431.1   5 aleldPnnadaynnLAelllnnGdleeAeq 34 
                 a+e dP +a +y n+A+++l++G+++ A++
  MMETSP0890-20130614|6763_1 102 AIEADPYDASVYSNRAQAWLSLGQWQSARE 131
                 8*************************9985 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00017
   PF13431.1   4 kaleldPnnadaynnLAelllnnGdleeAe 33 
                 +++++d +n   +++LA+++ ++ d+e+A+
  MMETSP0890-20130614|6763_1 135 ECVRIDSTNLKGWYRLAKAFEKLEDYEQAI 164
                 799**************************8 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.2     2e+03      23      66 ..     179     223 ..     173     224 .. 0.68
   2 !   17.1   0.0   5.9e-06    0.0054       2      42 ..     390     430 ..     389     435 .. 0.94
   3 !    9.8   0.1    0.0011         1      24      69 ..     591     638 ..     583     658 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.2
                 --S-EEEEE----EEEEE---....EEE---.BSS-EEEEEEEEE CS
  PF04969.11  23 kkedvkveikkkslkvsikgpgekeyllege.LfgeIdpeesswk 66 
                 k+++v  ++k+  l+   k +++k+++ +++ L+ e  pee +wk
  MMETSP0890-20130614|6763_1 179 KDSQVIKKLKRHLLREAKKFKQKKKIQRDLReLCLEMTPEERRWK 223
                 44555555555555555555667889999989********99998 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 5.9e-06
                 --EEEEETTEEEEEEE-------S-EEEEE----EEEEE-- CS
  PF04969.11   2 rydWyQtleeVtitipvkgvikkedvkveikkkslkvsikg 42 
                 +y+W Q+l ++++++ ++  + + d+ v++++++l+v ++ 
  MMETSP0890-20130614|6763_1 390 NYSWRQKLYDIEVRLLLPPFTHATDLIVHLSPRRLRVTLNC 430
                 7************************************9876 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.0011
                 -S-EEEEE----EEEEE---.......EEE---BSS-EEEEEEEEEE-- CS
  PF04969.11  24 kedvkveikkkslkvsikgpge...keyllegeLfgeIdpeesswkied 69 
                 + ++k+ +++++  + +k+ ++     +ll+ +L++++ ++es w+i++
  MMETSP0890-20130614|6763_1 591 TANLKIIVSEDH-VFPCKNDQGlpsTIVLLDFQLSKKVLVDESIWHISK 638
                 567777777777.777888666775569******************986 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   9.6e-08   8.8e-05       4      56 ..      83     136 ..      82     143 .. 0.89
   2 ?    4.8   0.0     0.046        42       1      19 [.     148     166 ..     145     173 .. 0.62

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 9.6e-08
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.allra 56 
                 ++ +++ ++y++A++ ++ a++++P +a ++ ++a+a l lg+++ A+  +++ 
  MMETSP0890-20130614|6763_1  83 GNKYYAKKQYRKAVEEYSFAIEADPYDASVYSNRAQAWLSLGQWQSAReDADEC 136
                 7899********************************************666654 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.046
   PF13432.1   1 lalArallraGdydeAlaa 19 
                 ++lA+a+ ++ dy++A+ +
  MMETSP0890-20130614|6763_1 148 YRLAKAFEKLEDYEQAISI 166
                 4566666666666666554 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.3   3.5e-08   3.2e-05       3      79 ..      90     165 ..      86     169 .. 0.88
   2 ?   -3.0   0.1       7.9   7.2e+03      74      83 ..     354     363 ..     341     364 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.5e-08
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCC CS
   PF12895.2   3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAia 79 
                 ++y++A+  +  +++ +p   +++++ + A++ +++g++++A e  ++   +ds++l+  y lA++++kl++y++Ai+
  MMETSP0890-20130614|6763_1  90 KQYRKAVEEYSFAIEADP--YDASVYSNRAQAWLSLGQWQSAREDADEcVRIDSTNLKGWYRLAKAFEKLEDYEQAIS 165
                 677777777777777766..48999999******************99****************************98 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 7.9
                 HHHHCCCHHH CS
   PF12895.2  74 ydeAiavLek 83 
                  +eAi++L k
  MMETSP0890-20130614|6763_1 354 KNEAIDALAK 363
                 6788888876 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.9      0.25   2.3e+02      11      32 ..      86     107 ..      83     109 .. 0.83
   2 !    8.6   0.0    0.0017       1.5       2      32 ..     111     141 ..     110     143 .. 0.90
   3 !   10.8   0.1   0.00032      0.29       2      22 ..     145     165 ..     144     167 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.25
                 HHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  11 YrqlGdydkAkeylekalelkp 32 
                 Y  +++y kA e +  a+e +p
  MMETSP0890-20130614|6763_1  86 YYAKKQYRKAVEEYSFAIEADP 107
                 88899*****999987777777 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0017
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                  +y n++++ ++lG++ +A e   +++ ++ 
  MMETSP0890-20130614|6763_1 111 SVYSNRAQAWLSLGQWQSAREDADECVRIDS 141
                 5799***********************9986 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00032
                 --TTT---HHHHTT-HHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAke 22 
                 k +y+l++++++l dy++A++
  MMETSP0890-20130614|6763_1 145 KGWYRLAKAFEKLEDYEQAIS 165
                 57*****************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.014        13      11      44 .]      86     119 ..      83     119 .. 0.91
   2 !   14.5   0.2     4e-05     0.036       3      43 ..     112     152 ..     110     153 .. 0.94
   3 !    7.8   0.0    0.0056       5.1       3      26 ..     146     169 ..     144     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.014
   PF13428.1  11 llalGdpdeAiallrralalaPddaealllLarl 44 
                 + a  ++ +A++ +  a++++P da ++ + a++
  MMETSP0890-20130614|6763_1  86 YYAKKQYRKAVEEYSFAIEADPYDASVYSNRAQA 119
                 67889*********************99998885 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4e-05
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLar 43 
                 ++  +a+a l lG+++ A++ +++ ++ + +++  +++La+
  MMETSP0890-20130614|6763_1 112 VYSNRAQAWLSLGQWQSAREDADECVRIDSTNLKGWYRLAK 152
                 68899**********************************97 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0056
   PF13428.1   3 allalarallalGdpdeAiallrr 26 
                  +++la a++ l+d+++Ai  ++ 
  MMETSP0890-20130614|6763_1 146 GWYRLAKAFEKLEDYEQAISICDT 169
                 69****************987765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   4.2e-05     0.039      12      76 ..      83     140 ..      78     142 .. 0.84
   2 !    8.4   0.0    0.0019       1.8       8      29 ..     147     168 ..     140     181 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.2e-05
   PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                 ++ ++++++y +A e y  a+e       d++d a+++ n a+++l lg+ ++A+e   ++++i+
  MMETSP0890-20130614|6763_1  83 GNKYYAKKQYRKAVEEYSFAIEA------DPYD-ASVYSNRAQAWLSLGQWQSAREDADECVRID 140
                 66788888888888888888865......7788.*********************9999988886 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0019
   PF13424.1   8 lnnlalvlrrlgdydeAlelye 29 
                 +++la ++++l+dy++A++++ 
  MMETSP0890-20130614|6763_1 147 WYRLAKAFEKLEDYEQAISICD 168
                 689***************9986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.015        14       2      20 ..     113     131 ..     112     132 .. 0.91
   2 !   13.0   0.1   6.8e-05     0.062       2      22 ..     147     167 ..     147     170 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.015
   PF13176.1   2 llnLarlysrlgdyekAie 20 
                 ++n a+++ +lg+++ A e
  MMETSP0890-20130614|6763_1 113 YSNRAQAWLSLGQWQSARE 131
                 899************9965 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 6.8e-05
   PF13176.1   2 llnLarlysrlgdyekAiely 22 
                 +++La+++++l dye+Ai+++
  MMETSP0890-20130614|6763_1 147 WYRLAKAFEKLEDYEQAISIC 167
                 689***************987 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.7   4.3e-05     0.039      11      36 .]      86     109 ..      83     109 .. 0.92
   2 ?    3.7   0.1     0.053        49       1      21 [.     144     164 ..     144     166 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-05
                 HHHTT-HHHHHHH..HHHHHHH-TT- CS
   PF07720.7  11 fynkkkyqeArelfsYallaildken 36 
                 +y+kk+y +A+e +s  ++   d+++
  MMETSP0890-20130614|6763_1  86 YYAKKQYRKAVEEYS--FAIEADPYD 109
                 9************88..**9999997 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.053
                 HHHHHHHHHHHHHTT-HHHHH CS
   PF07720.7   1 ldylyslAaefynkkkyqeAr 21 
                 l+ +y lA +f   ++y++A+
  MMETSP0890-20130614|6763_1 144 LKGWYRLAKAFEKLEDYEQAI 164
                 578*****************8 PP

>> PF09295.5  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   2.4e-05     0.022     219     293 ..      95     169 ..      85     201 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-05
   PF09295.5 219 avkllndalkeeekdaelLslqaefllskkkeelalevakravksaPsefktWalLvkvYikledienALltLNs 293
                 av+    a++ ++ da++ s +a+  ls  + + a e a++ v++   + k W++L+k + kled+e+A+ +  +
  MMETSP0890-20130614|6763_1  95 AVEEYSFAIEADPYDASVYSNRAQAWLSLGQWQSAREDADECVRIDSTNLKGWYRLAKAFEKLEDYEQAISICDT 169
                 66666677889999999999999999*******************************************976555 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00039      0.36       8      57 ..      89     138 ..      84     158 .. 0.88
   2 ?   -2.8   0.0       5.8   5.3e+03       5      35 ..     418     449 ..     416     450 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00039
   PF13371.1   8 eedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeafle 57 
                  +++ +A + +   ++ +P d++ +  r+ +   lg+++ A+ed + ++ 
  MMETSP0890-20130614|6763_1  89 KKQYRKAVEEYSFAIEADPYDASVYSNRAQAWLSLGQWQSAREDADECVR 138
                 677888888888889999**************************998885 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 5.8
   PF13371.1   5 ylreedferALavverlll.laPddpyerRDr 35 
                 +l++++   +L++++++ + +aP+++  + D 
  MMETSP0890-20130614|6763_1 418 HLSPRRLRVTLNCQALRFWpFAPNSWTMISDV 449
                 78888888899999887542477777777666 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.44     4e+02      10      27 ..      86     103 ..      82     107 .. 0.70
   2 ?    2.2   0.0      0.29   2.7e+02       5      27 ..     115     137 ..     112     140 .. 0.80
   3 ?    8.9   0.0    0.0022         2       3      22 ..     147     166 ..     145     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyklgdtdeAlealerli 27 
                 yy+ +++++A+e +   i
  MMETSP0890-20130614|6763_1  86 YYAKKQYRKAVEEYSFAI 103
                 666668888888776555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerli 27 
                 ++a++ + lg+++ A+e  ++++
  MMETSP0890-20130614|6763_1 115 NRAQAWLSLGQWQSAREDADECV 137
                 7899999999**99999776665 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   3 lyklalsyyklgdtdeAlea 22 
                 +y+la++++kl d+++A+ +
  MMETSP0890-20130614|6763_1 147 WYRLAKAFEKLEDYEQAISI 166
                 7*********88*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:01.17
# Mc/sec: 1431.67
//
Query:       MMETSP0890-20130614|6772_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   38.1   0.0    1.9e-09   37.3   0.0    1.3  1  PF00089.21 Trypsin
  ------ inclusion threshold ------
      0.046   12.9  19.3      0.094   11.9  13.4    1.5  1  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.8e-13   1.9e-09      16     202 ..     155     350 ..     147     363 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.8e-13
                 EEEEEETT.EEEE-EEEEETTEEEEEGGGGTS.....GGGEEEEEECBBTTSCTTT.....TEEEEEEEEEEETTEBTTTT..........TTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTSBESBCBCEEEEEBEHHHHHHTTTTTSTTTEEEEESTSSSB---------EEEEET...EB---BEEE.TTCC CS
  PF00089.21  16 vslsvksg.khlCgGslisenwvLTAaHcvkn.....asdvkvvlgehnlkksegk.....eqklkvekvilhpnynpstl..........dnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekgksdtlqevevpvvsretcksayggkvtenmlcagakggkdacqGDSGGPlvcsdg...elvGivswg.kgca 202
                  ++s+++g +++C+G+l++++ +L+A+Hc  +     a +++v  g ++ + +eg      +  ++  +v+   +y++s++          d Di ll+l++   lg++  ++          + ++ +++G++ +++ +       +++p  +++++ + y ++v +++  + +++g+ a  G SGGP  ++dg   ++  ++s+g + c 
  MMETSP0890-20130614|6772_1 155 MFISYSNGaTYVCSGTLVGPYHLLSARHCSWDgclgaAVQIRVACG-YSYVDEEGVdnfahYGSAYGTNVVRFGEYDESAYcgadyidtriDLDIFLLRLDRA--LGEQLGWYGMTN-----RPASSLSQIGYPGNRQLN-------DYIPFATDKSIYR-YLDQVYQEYTNIYTTYGELAWGGESGGPWYRDDGssrYVGAVLSGGaSPCI 350
                 5677877889********************999**55445555334.45555555423322555566669999999999989*********************..************.....567899999999987777.......8999999988888.455577888888887899******************999999999977775 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  13.4   1.4e-05     0.094       1      27 [.     513     539 ..     513     540 .] 0.96

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPt 27 
                 +pT  P+ +PT qPT +P+a+PT +Pt
  MMETSP0890-20130614|6772_1 513 EPTPKPSFRPTSQPTPAPVANPTPKPT 539
                 79************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:01.06
# Mc/sec: 1220.79
//
Query:       MMETSP0890-20130614|6774_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   12.6   0.4       0.17   11.6   0.3    1.5  1  PF13373.1 DUF2407 C-terminal domain


Domain annotation for each model (and alignments):
>> PF13373.1  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.3e-05      0.17       6      61 ..     177     253 ..     170     305 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
   PF13373.1   6 LlsaGfseeevedLRrqFlsiygdseetedtipdee..neqrelrelEerWiesgsn...................s 61 
                 Ll+aG +++ +  LR+++ +++   +++ +  ++ e   ++++lr+ Ee+ + +  +                    
  MMETSP0890-20130614|6774_1 177 LLEAGKARAQIARLREYYEQTHQLVRSAVQIYSSSErlPSRKSLRHFEEAHLSDDDHendrqssldgpmlrasqqsI 253
                 899********************8777777777777888899*********97776656676666665555443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       903  (0.0660474); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:01.12
# Mc/sec: 678.61
//
Query:       MMETSP0890-20130614|6777_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        93  (0.00680222); expected 273.4 (0.02)
Passed bias filter:                       93  (0.00680222); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.41s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 112.77
//
Query:       MMETSP0890-20130614|6775_1  [L=1133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-108  362.5   0.1   3.7e-108  362.0   0.0    1.2  1  PF04053.9  Coatomer WD associated region
    2.2e-62  210.8   0.0    6.2e-62  209.3   0.0    1.7  2  PF06957.6  Coatomer (COPI) alpha subunit C-terminus
    5.9e-53  174.8  14.4    9.4e-10   37.9   0.7    7.6  7  PF00400.27 WD domain, G-beta repeat
     0.0068   16.2   0.9      0.023   14.5   0.3    2.0  2  PF05397.7  Mediator complex subunit 15
  ------ inclusion threshold ------
      0.017   13.2   6.4      0.021   12.9   0.1    3.0  3  PF11715.3  Nucleoporin Nup120/160
      0.032   12.9   1.8       0.55    8.8   0.0    2.9  3  PF08801.6  Nup133 N terminal like
      0.057   13.2   0.5         18    5.4   0.0    3.4  3  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.0   0.0  1.9e-111  3.7e-108       4     442 ..     341     775 ..     338     776 .. 0.94

  Alignments for each domain:
  == domain 1    score: 362.0 bits;  conditional E-value: 1.9e-111
   PF04053.9   4 vrqanikkkee..lkdgellslslkelgsieiypqslshnpngrfvlV...cgdgeyiiyt......alawrnkaygkaldfvwvssnrfavleksksvkifknfkekktksik..leysvekifg....GalLgvksesfisfYDweqkklvrridvkkvknViwsddgelvalvskdtvyilsynleaveedeeegvedafevlhelseriksgaWvgd..vfiYttsnrLkY.lvngevgiikhldktlyilgykgkenrlylldrdgnvvslelnlselefktavlrkdleevlkiiaksnllpsipkdegnkiirfLekkgypelAlqlvqDpetrFdLAlelgnLevAlelakeldseekWkkLgdaAlsqgniklaeeayqkakdfdkLllLylstgnkekLkkLakiaeekgdlniafqaalllgdvekcvdlLiksgrlpeAalfAktyg 442
                 +rq++i++ ++  l    ++   +++lg+     ++ s+np+++++l+   ++ g+y+++         + ++ ++g al +v+ ++nr+a+l+k++++ i ++  ++k k+i+   + s +++f     G +L+ ++++ +++++ ++++++ +i+   vk++ w+ d ++valvsk+ v+i++++le            ++++++e ++r+k gaW+++  +f+Ytt+n++kY + ng++g +++ld ++yi+ +++  +++ ++dr+++v++++++l+e  fk+a+ +k++++v++i+++s l+       g++ii++L +kg+ e+Al++v D ++rF LAl +gn+evA ++a+e+ se++W++L+ +A++qgn+k +e+ayq++k+f++L++Ly +tg++ekL+k+ kiae ++d++ +++++l lgdv +++ +L  +g  ++A+ +A+++ 
  MMETSP0890-20130614|6775_1 341 LRQYDISNGNDvpLLPLRRPVHMQSSLGNNLRSLEYNSMNPSEHSLLLfsdVDGGSYELLAfakdtaISEGSDAKRGAALAAVFFTRNRIAILDKNRQIVI-RDAMNEKRKAISflSNASPDGMFFggsaGRVLIRSDDK-MILFEPQSRRVLGEIQAARVKYIAWNHDASYVALVSKHGVIIANKELE------------QLCSITE-TVRVKGGAWDNSsrIFVYTTLNHIKYcIPNGDSGLVRTLDVPIYITEVQA--KKVICIDRECRVRVVSVDLTEAMFKLALDEKNYRQVMQIVRQSHLC-------GKAIINYLDNKGFAEVALHFVDDLRSRFKLALACGNIEVATDTAHEIGSEDCWNHLAIEAMRQGNYKTVEMAYQRIKNFERLSFLYFITGQNEKLRKMLKIAEMRKDIMAQYHNTLFLGDVVERCRILEIAGLSALAQTCAQAHA 775
                 6677777775555444444555567788888889999999***********************99976788999***************************.998877778777225677899*999*************.************************************************............*******.***********889************************************..**********************************************.......**********************************************************************************************************************************************986 PP

>> PF06957.6  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   2.3e+03     277     309 ..     412     447 ..     404     454 .. 0.70
   2 !  209.3   0.0   3.2e-65   6.2e-62      46     337 ..     837    1110 ..     806    1126 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.2
   PF06957.6 277 eqqkrlaelaa.yfthckLq..pvhliLvLrsalnl 309
                  ++kr a laa +ft+ ++      + +v+r a+n 
  MMETSP0890-20130614|6775_1 412 SDAKRGAALAAvFFTRNRIAilDKNRQIVIRDAMNE 447
                 689999999984678766551145677889999985 PP

  == domain 2    score: 209.3 bits;  conditional E-value: 3.2e-65
   PF06957.6   46 dlgldedelveaedgladaeeGeneedeeegGWdveddLelPpeldvpkdkag.nadsdvfvaPnkglsvsqeWankssLaadhvaaGsfetalrLLhdqlGvvnfaPlkslfldlyaasrssyralaslpsvsiavernysesalknslPavvlklsqleerLkaayklttsGkfeeavekfrsiLlsiPLlvvdskrevaeakqLitivreyvvgLklelkrkelkkdtleqqkrlaelaayfthckLqpvhliLvLrsalnlffklknlktaasfarrLLelaPkeevak 337 
                   +  d        d l+  ++ +   +ee+ GW+  ddL l +++d+++ +    + s+    P++g+++ + W++ ss aa h+aaGs+  ++ LL++q+   nfaPlks +l+++ + ++ + + a    ++i+   + +e+    + Pa ++ ls+ ++ Lk +y+   +G f++a e f siLlsiPL+vvd++  v+e+k+L++i rey+ +++l     + + + ++q     el+a fthckLqpvhl+L+L+ a++  +kl n+ taa farr+Lel    + a+
  MMETSP0890-20130614|6775_1  837 SI--D--------DDLGGPDNNNILPNEENDGWG--DDLDLGEDIDTSQVSKEqVVSSEKNLIPTPGVPPPSLWCRASSHAAHHAAAGSLVSSMNLLNRQIAATNFAPLKSKMLQTFHGVHTVLPGHAFSVPMTIHLSSQVHEN-PSTKIPASTFLLSDTVDNLKIGYRHFQKGNFSQAKESFISILLSIPLIVVDTRSAVNEVKELVEISREYITAIRLKNA--NAETEGVRQ----LELSALFTHCKLQPVHLMLALNLAMSQAYKLGNFITAAGFARRILELPDTSSGAQ 1110
                  22..3........22333333334568999***8..68*********996554156788899*****************************************************************99988999999999998.45699*******************************************************************998544..344455555....5*********************************************977766665 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00063       1.2      14      39 .]       1      26 [.       1      26 [. 0.95
   2 !   30.3   0.0   1.1e-10   2.2e-07       4      39 .]      33      68 ..      30      68 .. 0.93
   3 !   32.9   0.0   1.7e-11   3.4e-08       2      39 .]      73     110 ..      72     110 .. 0.97
   4 !   37.9   0.7   4.8e-13   9.4e-10       2      39 .]     115     152 ..     114     152 .. 0.98
   5 !   31.2   0.0   5.9e-11   1.2e-07       3      38 ..     197     232 ..     195     233 .. 0.96
   6 !   36.2   0.0   1.6e-12   3.1e-09       6      39 .]     244     277 ..     241     277 .. 0.96
   7 ?   -0.7   0.0      0.71   1.4e+03      14      30 ..     499     515 ..     497     521 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00063
                EEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27 14 VtcvafspdgpllasgSrDgtirlWd 39
                V  +af++++p+++++ ++g i lWd
  MMETSP0890-20130614|6775_1  1 VKGLAFHHHRPWILTSLHNGVIQLWD 26
                6789*********************9 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.1e-10
                EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +  +++H +pV+ v+f+  +pl++sg++D  +++Wd
  MMETSP0890-20130614|6775_1 33 IDRFDEHDGPVRGVDFHRAQPLIVSGGDDYRVKVWD 68
                66799******************************9 PP

  == domain 3    score: 32.9 bits;  conditional E-value: 1.7e-11
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  c+ tl gH + ++ v f+ ++p+l+s+S+D tir+W+
  MMETSP0890-20130614|6775_1  73 RCLFTLLGHLDYIRTVNFHIEYPWLVSASDDQTIRIWN 110
                 69***********************************7 PP

  == domain 4    score: 37.9 bits;  conditional E-value: 4.8e-13
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  c+++l+gH++ V c +f+    l++s+S D t+r+Wd
  MMETSP0890-20130614|6775_1 115 SCVSVLTGHNHYVMCASFHVKDDLIVSASLDQTVRVWD 152
                 7************************************9 PP

  == domain 5    score: 31.2 bits;  conditional E-value: 5.9e-11
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 +k++l+gH  +V+  +f+p+ pl++sg +D+ ++lW
  MMETSP0890-20130614|6775_1 197 VKYVLEGHDRGVNWASFHPTLPLIISGADDRQVKLW 232
                 699********************************* PP

  == domain 6    score: 36.2 bits;  conditional E-value: 1.6e-12
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 t rgH++ V+cv f+p + l++s S+D++ir+Wd
  MMETSP0890-20130614|6775_1 244 TMRGHNNNVSCVVFHPKQELIISNSEDRSIRVWD 277
                 789******************************9 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 0.71
                 EEEEEEESSSTEEEEEE CS
  PF00400.27  14 VtcvafspdgpllasgS 30 
                 V  +a+++d +++a  S
  MMETSP0890-20130614|6775_1 499 VKYIAWNHDASYVALVS 515
                 6779*****99998666 PP

>> PF05397.7  Mediator complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.1e+03      54      75 ..     603     624 ..     592     658 .. 0.79
   2 !   14.5   0.3   1.2e-05     0.023      42      91 ..     697     748 ..     689     754 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
   PF05397.7  54 liplfylltkneenvkrLlqmr 75 
                 l  ++++l  +e+n ++++q+ 
  MMETSP0890-20130614|6775_1 603 LTEAMFKLALDEKNYRQVMQIV 624
                 5567889999999999999974 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.2e-05
   PF05397.7  42 qkiqqllarvdsl..iplfylltkneenvkrLlqmrimlkeilekllkgiyl 91 
                 +++++ ++r+ ++  ++++y++t+++e+++++l+++ m k+i+ + ++  +l
  MMETSP0890-20130614|6775_1 697 KTVEMAYQRIKNFerLSFLYFITGQNEKLRKMLKIAEMRKDIMAQYHNTLFL 748
                 67788899999987789**************************998887765 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3     0.043        83     234     255 ..      97     118 ..      85     127 .. 0.84
   2 ?   12.9   0.1   1.1e-05     0.021     227     285 ..     132     181 ..     124     235 .. 0.72
   3 ?    0.5   0.1     0.061   1.2e+02     219     250 ..     248     280 ..     227     288 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.043
   PF11715.3 234 vftlsrDgkLRvWnletgqclr 255
                 +++ s D+++R+Wn   ++c++
  MMETSP0890-20130614|6775_1  97 LVSASDDQTIRIWNWQSRSCVS 118
                 678999***********99954 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.1e-05
   PF11715.3 227 evegqtfvftlsrDgkLRvWnletgqclrttdil....eaaellpadslsyipepsesslirv 285
                  + +++++++ s+D+++RvW++++  + +t+  +    ++a  ++a  +s            v
  MMETSP0890-20130614|6775_1 132 FHVKDDLIVSASLDQTVRVWDITGLRK-KTVRGAtpgaTPALQDAASASS------------V 181
                 456899******************999.4444445555333333333333............2 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.061
   PF11715.3 219 asldvssseve.gqtfvftlsrDgkLRvWnlet 250
                  +  vs++ ++ +q+++++ s D+ +RvW+++ 
  MMETSP0890-20130614|6775_1 248 HNNNVSCVVFHpKQELIISNSEDRSIRVWDISK 280
                 555555544442789999************975 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.82   1.6e+03     199     240 ..       8      47 ..       4      74 .. 0.65
   2 ?    1.6   0.2     0.043        83     193     219 ..     117     154 ..      74     181 .. 0.61
   3 ?    8.8   0.0   0.00028      0.55     186     228 ..     247     290 ..     206     305 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.82
   PF08801.6 199 ssrrilytlsskgtirvwdlspsgeslksevdirenlltilq 240
                 + r ++ t    g+i+ wd+     +l   +d+++ +++  +
  MMETSP0890-20130614|6775_1   8 HHRPWILTSLHNGVIQLWDYR--IGTLIDRFDEHDGPVRGVD 47 
                 5567888889999*****994..3444444666666666555 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.043
   PF08801.6 193 vqlridssr...........rilytlsskgtirvwdls 219
                 v++  ++ +           ++++++s + t+rvwd++
  MMETSP0890-20130614|6775_1 117 VSVLTGHNHyvmcasfhvkdDLIVSASLDQTVRVWDIT 154
                 33333333333333333334566666666666666664 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00028
   PF08801.6 186 seqeteivqlridssrrilytlsskgtirvwdlsp..sgeslkse 228
                 +++ + +++++ +++++++++ s++++irvwd+s+  + ++ ++e
  MMETSP0890-20130614|6775_1 247 GHNNN-VSCVVFHPKQELIISNSEDRSIRVWDISKrlGVQTFRRE 290
                 55466.999999*********************987777777765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.038        74       2      18 ..     681     697 ..     680     700 .. 0.92
   2 ?    5.4   0.0    0.0093        18       6      24 ..     988    1006 ..     986    1007 .. 0.91
   3 ?   -0.6   0.0      0.75   1.5e+03      11      30 ..    1083    1102 ..    1082    1102 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHTT-HH CS
  PF07719.12   2 ealynlGlayyklgdye 18 
                 ++++ l+  ++++g+y+
  MMETSP0890-20130614|6775_1 681 DCWNHLAIEAMRQGNYK 697
                 58**************6 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0093
                  HHHHHHHHTT-HHHHHHHH CS
  PF07719.12    6 nlGlayyklgdyeeAleaf 24  
                   +G+ ++++g++ +A+e f
  MMETSP0890-20130614|6775_1  988 KIGYRHFQKGNFSQAKESF 1006
                  5799************987 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.75
                  HHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   11 yyklgdyeeAleafekAlel 30  
                  +yklg++  A+ + ++ lel
  MMETSP0890-20130614|6775_1 1083 AYKLGNFITAAGFARRILEL 1102
                  69********9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.45u 0.43s 00:00:01.88 Elapsed: 00:00:02.15
# Mc/sec: 1262.82
//
Query:       MMETSP0890-20130614|6780_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-28   98.5   0.9    1.8e-28   98.3   0.6    1.1  1  PF02970.11 Tubulin binding cofactor A
    0.00041   19.0   0.7    0.00049   18.7   0.5    1.0  1  PF08317.6  Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.054   11.7   0.7      0.065   11.5   0.5    1.0  1  PF03961.8  Protein of unknown function (DUF342)
        0.1   11.3   0.1       0.11   11.3   0.1    1.0  1  PF14362.1  Domain of unknown function (DUF4407)
       0.14   11.6   1.6          5    6.6   0.3    2.1  2  PF14063.1  Protein of unknown function (DUF4254)


Domain annotation for each model (and alignments):
>> PF02970.11  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.6   6.5e-32   1.8e-28       1      77 [.      13      89 ..      13     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 98.3 bits;  conditional E-value: 6.5e-32
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHHHHHH CS
  PF02970.11  1 qLkiktsvvkRlvKEeasYekEveqqeerveklkaegedeydlkkqeeVlketekmlpdlkkrlqkavadLesllee 77
                q+ +kt++vkRlvKE+a+Y  E +++ +rv+k+++eg+d+yd+kk++eVl+et++m+pd+k+rl++a++dL+ +l+ 
  MMETSP0890-20130614|6780_1 13 QIAVKTNIVKRLVKEVAHYRAETQEHVDRVNKMRSEGKDPYDIKKAQEVLEETRMMIPDSKRRLNDAIEDLDVFLDA 89
                789**********************************************************************9654 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.5   1.8e-07   0.00049     160     249 ..       6      93 ..       3     103 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.8e-07
   PF08317.6 160 elkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkieal 249
                 ++++de+++  k + ++ +++++ ++ ++ +e+++  +++++  e  d+ +++k++e L+++   i  +++ l++  e+l+   +++ ++
  MMETSP0890-20130614|6780_1   6 TVQSDEKQIAVKTNIVKRLVKEVAHYRAETQEHVDRVNKMRS--EGKDPYDIKKAQEVLEETRMMIPDSKRRLNDAIEDLDVFLDAVGDK 93 
                 799*************************************99..889*************************999988888777777665 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   2.4e-05     0.065     367     441 ..      11      82 ..       3      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
   PF03961.8 367 gqlesekkeqleklletkeklkeeleeleaelkelkeeleskkkeakikvnkeiypgvkikigkkkriikreisn 441
                 +++ + k + +++l ++  +++ e +e+ ++ +++ +e ++      ik  +e+  +++++i + kr++++ i+ 
  MMETSP0890-20130614|6780_1  11 EKQIAVKTNIVKRLVKEVAHYRAETQEHVDRVNKMRSEGKDP---YDIKKAQEVLEETRMMIPDSKRRLNDAIED 82 
                 455677889999999999999999999999999999999988...58999999**************99998765 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.9e-05      0.11     135     220 ..       5      89 ..       2     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
   PF14362.1 135 aklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpv.ykekkealdaaqaeletlkaqldaaqaeleankrkaa 220
                 a+ +  +++ia + + ++ + +ev+  ++e+q+ ++   +   +Gk+p+  k+++e l++ +  + + k++l++a++ l+   +++a
  MMETSP0890-20130614|6780_1   5 ATVQSDEKQIAVKTNIVKRLVKEVAHYRAETQEHVDRVNKMRSEGKDPYdIKKAQEVLEETRMMIPDSKRRLNDAIEDLD--VFLDA 89 
                 56788899***************************************9846778888899999**************999..44444 PP

>> PF14063.1  Protein of unknown function (DUF4254)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0018         5      34      56 ..      20      42 ..       5      64 .. 0.82
   2 ?    4.7   0.0     0.007        19      36      64 ..      66      93 ..      53     108 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0018
   PF14063.1 34 klKRaIdklnqeRndlveaiDel 56
                 +KR ++++ + R++++e++D++
  MMETSP0890-20130614|6780_1 20 IVKRLVKEVAHYRAETQEHVDRV 42
                48*******************75 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.007
   PF14063.1 36 KRaIdklnqeRndlveaiDelllealkdv 64
                   I  + ++ nd++e++D ++l+a+ d 
  MMETSP0890-20130614|6780_1 66 RMMIPDSKRRLNDAIEDLD-VFLDAVGDK 93
                456888999**********.555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       977  (0.0714599); expected 273.4 (0.02)
Passed bias filter:                      747  (0.0546372); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 496.09
//
Query:       MMETSP0890-20130614|6783_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-07   30.8   0.0    2.4e-07   30.2   0.0    1.3  1  PF01789.11 PsbP


Domain annotation for each model (and alignments):
>> PF01789.11  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.7e-11   2.4e-07     102     174 ..     122     207 ..      75     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.7e-11
                 -EEEEEEEEEEEET.TEEEEEEEEEEE---...--.........EEEEEEEEEE----EEEEEEEEEGGGHHHHHHHHHHHHHT-B CS
  PF01789.11 102 reaelleaseread.gktYYdlevlvklad...eg.........drhelatvtvergkLYtlklqtnekrwekvkkllervvdSFs 174
                 +  ++++a++r+++ g  YYd +++v+  +   e+         d  +l++++v++gkL+ ++  ++  +w+   k l+++ +SF 
  MMETSP0890-20130614|6783_1 122 ARGDIVAARKRTDQnGIIYYDWDLAVSPLEcpkEQqlvvttclpDEVALISAAVSNGKLFVFECAVTPPQWKNFAKALRTLRNSFL 207
                 6779*********99***********988877633799999999*****************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 803.70
//
Query:       MMETSP0890-20130614|6785_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0045   16.7   2.9     0.0045   16.7   2.0    1.7  2  PF14197.1  Centrosome localisation domain of PPC89
  ------ inclusion threshold ------
       0.01   15.5   1.4       0.01   15.5   0.9    2.4  3  PF07716.10 Basic region leucine zipper
      0.015   15.1   3.3      0.015   15.1   2.3    2.0  2  PF13863.1  Domain of unknown function (DUF4200)
      0.048   13.6   8.4      0.063   13.2   5.8    1.1  1  PF05103.8  DivIVA protein
      0.097   11.2   6.8       0.11   10.9   4.7    1.0  1  PF09731.4  Mitochondrial inner membrane protein
       0.15   11.4   1.3       0.17   11.2   0.9    1.1  1  PF07994.7  Myo-inositol-1-phosphate synthase
       0.19   12.0   6.8       0.11   12.8   3.4    1.5  2  PF05957.8  Bacterial protein of unknown function (DUF883)
       0.21   11.8   3.0       0.27   11.4   2.1    1.2  1  PF07739.8  TipAS antibiotic-recognition domain
       0.21   11.5   2.1       0.25   11.2   1.5    1.1  1  PF11233.3  Protein of unknown function (DUF3035)
       0.36   10.7   3.7        2.4    8.0   2.5    2.0  1  PF06013.7  Proteins of 100 residues with WXG
       0.46    9.3   5.3       0.55    9.1   3.7    1.1  1  PF11727.3  Invariant surface glycoprotein
       0.67    9.7   4.9       0.74    9.6   0.6    2.4  2  PF07989.6  Microtubule associated
       0.79    9.1   4.8       0.97    8.8   3.4    1.1  1  PF12999.2  Glucosidase II beta subunit-like
       0.93    9.8   8.8         88    3.4   6.1    2.2  1  PF12711.2  Kinesin motor
        1.1    9.5   4.1        1.5    9.0   2.8    1.3  1  PF06156.8  Protein of unknown function (DUF972)
        1.4    8.3   6.8        1.8    8.0   4.7    1.3  1  PF04156.9  IncA protein
        1.7    8.0   5.0        1.9    7.9   3.0    1.5  1  PF04977.10 Septum formation initiator
        2.1    7.6   5.0        2.6    7.3   3.4    1.1  1  PF01988.14 VIT family
        4.8    5.9   8.3        5.7    5.6   5.8    1.0  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.0   6.3e-06    0.0045       9      62 ..      16      69 ..      12      83 .. 0.86
   2 ?   -0.5   0.3       1.5   1.1e+03      33      44 ..      82      93 ..      67      98 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.3e-06
   PF14197.1  9 tLrnrldsltrkvqvheielksLnkErdsalrqLgvAyeelneLkaevealrkE 62
                tL  r+ +++r+ + +e e+  L++E ++ ++q ++ + ++++ k+e  a +++
  MMETSP0890-20130614|6785_1 16 TLGGRWSEAERRARDYEKENIQLRQEIERLNSQVDSMIKDSVKVKSEAVAHEAK 69
                7889******************************************98776665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.5
   PF14197.1 33 kErdsalrqLgv 44
                + ++++ ++L++
  MMETSP0890-20130614|6785_1 82 AQENMMRQNLSQ 93
                344456666554 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.9   1.4e-05      0.01      29      52 ..      23      46 ..      20      48 .. 0.91
   2 ?   -1.9   1.4       3.9   2.8e+03      21      21 ..      77      77 ..      54      89 .. 0.57
   3 ?   -1.7   1.8       3.3   2.4e+03      21      34 ..      77      90 ..      67      97 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-05
  PF07716.10 29 eleervkeLeeeNaqLrqkveqLe 52
                e e+r+ + e+eN qLrq++e L+
  MMETSP0890-20130614|6785_1 23 EAERRARDYEKENIQLRQEIERLN 46
                6799*****************997 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.9
  PF07716.10 21 e 21
                e
  MMETSP0890-20130614|6785_1 77 E 77
                2 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3.3
  PF07716.10 21 ekkkakeeeleerv 34
                ek ++ +e+++++ 
  MMETSP0890-20130614|6785_1 77 EKSRRAQENMMRQN 90
                45555555555544 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.3     2e-05     0.015      64     103 ..      23      62 ..      20      67 .. 0.91
   2 ?    0.5   1.2      0.67   4.8e+02      62      82 ..      69      89 ..      64      98 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-05
   PF13863.1  64 raekkaeeekkekkekeeeikklkaqleelkaeiekleek 103
                 +ae++a++ +ke++++ +ei++l++q++++ ++  k++ +
  MMETSP0890-20130614|6785_1  23 EAERRARDYEKENIQLRQEIERLNSQVDSMIKDSVKVKSE 62 
                 79****************************9999998876 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.67
   PF13863.1 62 reraekkaeeekkekkekeee 82
                ++ra++ +e+ ++++++++++
  MMETSP0890-20130614|6785_1 69 KRRADHVMEKSRRAQENMMRQ 89
                445555555555555555443 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.8   8.8e-05     0.063      36      94 ..      30      90 ..      25      99 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.8e-05
   PF05103.8 36 allkeneelkeeieeleekleeykeleeslkkslvv..aqetaeevkanakkeaeliikea 94
                ++ ken +l++eie+l+++++++ +   ++k+  v+  a++ a++v +++++ +e+++++ 
  MMETSP0890-20130614|6785_1 30 DYEKENIQLRQEIERLNSQVDSMIKDSVKVKSEAVAheAKRRADHVMEKSRRAQENMMRQN 90
                6789*******************44444444333321244444555555555555444443 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.7   0.00016      0.11     253     321 ..      27      95 ..      17      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
   PF09731.4 253 liasakeevdqlskklaelkaeeeeeleraLkekkeellkkleeelskeleekeakleeklrqefekek 321
                   ++ ++e  ql +++++l+ +++  ++ ++k k e +  +++++    +e+++ ++e+ +rq++ +  
  MMETSP0890-20130614|6785_1  27 RARDYEKENIQLRQEIERLNSQVDSMIKDSVKVKSEAVAHEAKRRADHVMEKSRRAQENMMRQNLSQQS 95 
                 5567788999*************************9999999999999999999999999999887665 PP

>> PF07994.7  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   0.00023      0.17      86     136 ..      43      92 ..      19      98 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHC-B---G-GGSTCCGTTT--SBS----HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF07994.7  86 pnlqeklkpdleksvyykkdfiavnqgerldnvlkektkleevekiredir 136
                 + l++++ + +++sv+ k++++a++ ++r+d+v+++ +++ + + +r+++ 
  MMETSP0890-20130614|6785_1  43 ERLNSQVDSMIKDSVKVKSEAVAHEAKRRADHVMEK-SRRAQENMMRQNLS 92 
                 2344555555559**********************4.34444445555554 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.4   4.6e+03      59      68 ..      22      31 ..      14      35 .. 0.51
   2 ?   12.8   3.4   0.00015      0.11       2      54 ..      37      90 ..      36      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 6.4
   PF05957.8 59 keaaeaadey 68
                +ea ++a++y
  MMETSP0890-20130614|6785_1 22 SEAERRARDY 31
                3344444443 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00015
   PF05957.8  2 eleaeletlladleellksaad.eageeaeelReraeealerarerlrdaedav 54
                +l++e+e l +++++++k++ + +++  a+e+++ra++ +e++r + ++++++ 
  MMETSP0890-20130614|6785_1 37 QLRQEIERLNSQVDSMIKDSVKvKSEAVAHEAKRRADHVMEKSRRAQENMMRQN 90
                6899*************9987725666789**************9999988764 PP

>> PF07739.8  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.1   0.00038      0.27      14      72 ..      20      78 ..      14      97 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00038
                -------------------TTHHHHHHHHHHHHHHH----TT----HHHHHHHH---T.T CS
   PF07739.8 14 ayaeseeklkslskedkeelkkeweelfaelaaamekgvdpdseevqelakehrdlle.e 72
                 + e+e++ + ++ke+  +l +e e+l+ ++ ++++++v++ se+v + ak+  d+++  
  MMETSP0890-20130614|6785_1 20 RWSEAERRARDYEKENI-QLRQEIERLNSQVDSMIKDSVKVKSEAVAHEAKRRADHVMeK 78
                57889999988888765.7888*****************************999988743 PP

>> PF11233.3  Protein of unknown function (DUF3035)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.5   0.00034      0.25      63     142 ..      16      97 ..       7     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00034
   PF11233.3  63 aLgGpaaaaasgaagasageaaLlaaagr..agadpnIRatvaaedaelrrkdkrfadellfwrdeykeayrkqaldaeaea 142
                 +LgG  ++a++ a   ++ + +L ++++r  +++d+ I+ +v+ ++++++++ kr ad ++  + + +e+  +q+l +++e 
  MMETSP0890-20130614|6785_1  16 TLGGRWSEAERRARDYEKENIQLRQEIERlnSQVDSMIKDSVKVKSEAVAHEAKRRADHVMEKSRRAQENMMRQNLSQQSER 97 
                 57774445555677777777788777776335799***************************************99999886 PP

>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.5    0.0034       2.4       8      40 ..      23      56 ..      21      95 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0034
   PF06013.7  8 elrqaakrfqkaaeelesilqrlkaqidal.qsg 40
                e +  a++++k++ +l+++++rl++q+d++ +++
  MMETSP0890-20130614|6785_1 23 EAERRARDYEKENIQLRQEIERLNSQVDSMiKDS 56
                67889***********************996664 PP

>> PF11727.3  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.7   0.00077      0.55      70     129 ..      30      89 ..      21      96 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00077
   PF11727.3  70 eikealervkaylekveslsdsklsdsdkkkikellekakdkikealkeakkagreieka 129
                 + +++  ++ + +e+++s  ds  +ds k k +++  +ak+ ++  +++  +a+++++++
  MMETSP0890-20130614|6785_1  30 DYEKENIQLRQEIERLNSQVDSMIKDSVKVKSEAVAHEAKRRADHVMEKSRRAQENMMRQ 89 
                 444444455555566665569999999999999999999999999999999999999987 PP

>> PF07989.6  Microtubule associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6     0.001      0.74      33      64 ..      23      54 ..      20      66 .. 0.76
   2 ?    0.6   0.1      0.65   4.7e+02      32      50 ..      77      95 ..      71      98 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.001
   PF07989.6 33 raeesveellkenielkvevetlkrelkekkk 64
                +ae+   +  keni+l+ e+e l+ +++++ k
  MMETSP0890-20130614|6785_1 23 EAERRARDYEKENIQLRQEIERLNSQVDSMIK 54
                56777788889999999999999999987644 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.65
   PF07989.6 32 kraeesveellkenielkv 50
                +++ + +e+++++n   ++
  MMETSP0890-20130614|6785_1 77 EKSRRAQENMMRQNLSQQS 95
                5666777888888876555 PP

>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.4    0.0013      0.97     119     172 ..      35      89 ..      23      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
   PF12999.2 119 caeiarkfeelleeankkvkkglkikeell.laakkkldelkkklkeledslkak 172
                   ++ +++e+l+++++  +k ++k+k e +  +ak++ d++++k ++ +++++++
  MMETSP0890-20130614|6785_1  35 NIQLRQEIERLNSQVDSMIKDSVKVKSEAVaHEAKRRADHVMEKSRRAQENMMRQ 89 
                 567889999999**************886516789999****9999999888765 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   6.1      0.12        88      22      42 ..      31      51 ..      20     101 .] 0.68

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.12
   PF12711.2 22 leeeneeLkeEiklLreqvek 42
                 e+en +L++Ei+ L+ qv+ 
  MMETSP0890-20130614|6785_1 31 YEKENIQLRQEIERLNSQVDS 51
                456668888888888888885 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.8    0.0021       1.5      14      66 ..      32      86 ..      20     100 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0021
   PF06156.8 14 eeqleelleeleelkkelkelleenaelklen..eklrerleeleeeekkkekkk 66
                e++  +l +e+e+l +++ +++++  ++k e   ++ ++r +++ e++++++++ 
  MMETSP0890-20130614|6785_1 32 EKENIQLRQEIERLNSQVDSMIKDSVKVKSEAvaHEAKRRADHVMEKSRRAQENM 86
                5555566677777777777777777666666421344444444444333222222 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.7    0.0025       1.8      83     138 ..      21      82 ..       5      99 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0025
   PF04156.9  83 lsesesqlseleeeleqleerlaeleseledleedlellq......eelksleerleslees 138
                  se+e++  ++e+e +ql+++++ l s++++  +d  + +      e++++    +e+ +++
  MMETSP0890-20130614|6785_1  21 WSEAERRARDYEKENIQLRQEIERLNSQVDSMIKDSVKVKseavahEAKRRADHVMEKSRRA 82 
                 56666666777777777777777777777666666555554444433333333333333333 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.0    0.0026       1.9      27      64 ..      29      71 ..      20      80 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0026
  PF04977.10 27 aalqaelaklkaeneeLeaevkdLks.....dedyieeqARse 64
                 + ++e+ +l++e+e+L ++v+ + +       ++++  A+++
  MMETSP0890-20130614|6785_1 29 RDYEKENIQLRQEIERLNSQVDSMIKdsvkvKSEAVAHEAKRR 71
                5678899999999999999999886655555566666666655 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.4    0.0036       2.6      58     122 ..      22      92 ..      19     100 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0036
  PF01988.14  58 aerdleeaelereqqeverspegeveeladilkak.glsee....taaqvaeeltakeda.ldfllkeelg 122
                 +e ++++++ e+e+ ++++++e+  +++ +++k+  +++ e    +a++ a+++++k  + ++ ++++ l 
  MMETSP0890-20130614|6785_1  22 SEAERRARDYEKENIQLRQEIERLNSQVDSMIKDSvKVKSEavahEAKRRADHVMEKSRRaQENMMRQNLS 92 
                 56677777777777777888887777888888777777765111156677777777777779999998775 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.8    0.0079       5.7      24     137 ..      30      91 ..      20      99 .. 0.47

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0079
   PF10186.4  24 elrlrlanlkaeketlkkkveealeeaene....kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikrtksklns 137
                 ++ +++++l++e e+l+++v+++++++ +      +++a +++ +v++k++r +                                                        + +++ n 
  MMETSP0890-20130614|6785_1  30 DYEKENIQLRQEIERLNSQVDSMIKDSVKVkseaVAHEAKRRADHVMEKSRRAQ--------------------------------------------------------ENMMRQNL 91 
                 566667777777777777777777632222555533333333333333333332........................................................22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1796  (0.131363); expected 273.4 (0.02)
Passed bias filter:                      952  (0.0696314); expected 273.4 (0.02)
Passed Vit filter:                       139  (0.0101668); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 378.18
//
Query:       MMETSP0890-20130614|6784_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-31  106.0  11.0    2.5e-09   36.5   0.3    6.5  6  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00029         4       6      32 ..      61      90 ..      58      95 .. 0.81
   2 !   36.5   0.3   1.8e-13   2.5e-09       5      39 .]     103     137 ..      99     137 .. 0.93
   3 !   21.0   0.0   1.4e-08   0.00019       7      38 ..     146     176 ..     140     177 .. 0.87
   4 !   31.5   0.1   6.9e-12   9.4e-08       1      38 [.     181     218 ..     181     219 .. 0.98
   5 !    5.1   0.0    0.0015        21      12      36 ..     328     352 ..     318     354 .. 0.86
   6 !    6.4   0.0   0.00059       8.1       2      37 ..     361     404 ..     360     406 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00029
                EEESSSSSEEEEEEESS...STEEEEEETT CS
  PF00400.27  6 tlrgHtspVtcvafspd...gpllasgSrD 32
                +l++Ht++V++va  ++   + l ++g+ D
  MMETSP0890-20130614|6784_1 61 KLTAHTDSVYAVALGQSldgRLLALTGGGD 90
                699**********99999966666666665 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 1.8e-13
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +l+gH ++V++vafs+dg l+a+g++Dg + +W+
  MMETSP0890-20130614|6784_1 103 IELTGHGDSVSSVAFSHDGALCATGGYDGVVQIWE 137
                 689*******************************6 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 1.4e-08
                 EESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 ++g  + V+ ++f+p g +++ gS Dgt+ lW
  MMETSP0890-20130614|6784_1 146 IEGP-GDVEWLRFHPRGDVILAGSGDGTVWLW 176
                 5566.99************************* PP

  == domain 4    score: 31.5 bits;  conditional E-value: 6.9e-12
                 TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
  PF00400.27   1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                 gec++++ gH+++V+c  f  dg+ +++gS+D t+r W
  MMETSP0890-20130614|6784_1 181 GECLRVFVGHEGAVSCGEFTSDGNGIVTGSADATVRSW 218
                 79**********************************99 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.0015
                 SSEEEEEEESSSTEEEEEETTSEEE CS
  PF00400.27  12 spVtcvafspdgpllasgSrDgtir 36 
                 sp+    ++p++p+l  + +Dg ir
  MMETSP0890-20130614|6784_1 328 SPIVQAIWHPSQPRLTVATADGFIR 352
                 6777788***************998 PP

  == domain 6    score: 6.4 bits;  conditional E-value: 0.00059
                 EEEEEEESSSSSEEEEEEESS........STEEEEEETTSEEEE CS
  PF00400.27   2 eckatlrgHtspVtcvafspd........gpllasgSrDgtirl 37 
                 +++++l+gHt+   +++++           + ++s+++D+  r+
  MMETSP0890-20130614|6784_1 361 DPLYELSGHTDLLLALDVHWGphdyaqseVHTVLSAGDDRIPRI 404
                 78999****************99**************9986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:01.00
# Mc/sec: 1011.26
//
Query:       MMETSP0890-20130614|6789_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-23   81.0   0.1    1.8e-22   79.3   0.0    1.8  2  PF00790.14 VHS domain
      3e-05   23.7   0.1    0.00011   22.0   0.0    1.9  1  PF03127.9  GAT domain
  ------ inclusion threshold ------
      0.039   12.1   0.1       0.19    9.8   0.0    1.8  2  PF10508.4  Proteasome non-ATPase 26S subunit
        3.4    8.0  10.1        6.2    7.1   0.4    2.3  2  PF10667.4  Protein of unknown function (DUF2486)


Domain annotation for each model (and alignments):
>> PF00790.14  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   5.3e-26   1.8e-22       3     141 .]      12     150 ..      10     150 .. 0.91
   2 ?   -1.4   0.1      0.42   1.4e+03       9      54 ..     237     285 ..     232     291 .. 0.69

  Alignments for each domain:
  == domain 1    score: 79.3 bits;  conditional E-value: 5.3e-26
                 ---HHHHHHHHHC-TT-SS-.-HHHHHHHHHHHHCS.----HCHHHHHHHHHT-SSHHHHHHHHHHHHHHHHH---HHHHHHTSHHHHHHHHHCC-TTT----S-HHHHHHHHHHHHHHH-...TT.-HHHHHHHHHHHH-- CS
  PF00790.14   3 sasslekliekATdeslree.dlslileicDlinek.eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekknsklakvkkkvlelleeWadafknkpe.lkkisdvykllkrkg 141
                 +++ le  +++AT+e l+   d+ l+leicD++ ++  + + + v +++ +++sknp+ + la +l++++v+N+  ++h  ++sk fl+ l ++++ +++s++   ++k+l l+e+W  af++k++ + +  ++y +lk +g
  MMETSP0890-20130614|6789_1  12 EQNGLEDMVNRATSEVLDGIvDWGLNLEICDAVASNpLELAPNLVVAVELRLKSKNPKIQGLAVTLIETCVQNGSAEIHGAVGSKAFLSVLSSVAETSSSSET---RDKALALIEQWGLAFESKRDiYPAYVETYANLKVRG 150
                 5677999**********9989***************97888888999**********************************************9999999996...***************666652677789999999876 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.42
                 HHHHHHC-TT-SS--HHHHHHHHHHHHCS...----HCHHHHHHHHHT- CS
  PF00790.14   9 kliekATdeslreedlslileicDlinek...eagpkeavrlikkkins 54 
                 +li+ A +  l+++ l+ +l++ D + +    e +  +++++i+   n+
  MMETSP0890-20130614|6789_1 237 TLIDAASRGVLTDDLLAFALKVNDNLAKAledEINSSKSIDAINPNTNH 285
                 6788888888888889999999998887754455666666666655555 PP

>> PF03127.9  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.1e-08   0.00011       6      85 ..     187     267 ..     183     268 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.1e-08
   PF03127.9   6 vaklrseleeVkesvklLsemLqeydpgeesqsdaellqeLyercekmqprifrli....setedndalaellavndeLnrvle 85 
                 +akl+ +l+ V e+++l +emL + +pg e+ +d  +l e +  +e+ +pr + li      +  +d+la  l+vnd+L ++le
  MMETSP0890-20130614|6789_1 187 LAKLQADLNVVAEKINLCNEMLPN-SPGIENGDD--ALAEVVGFLEACRPRMLTLIdaasRGVLTDDLLAFALKVNDNLAKALE 267
                 68999*****************87.567777777..9*******************777655667889***********99986 PP

>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.6e-05      0.19      71     134 ..      48     111 ..      38     127 .. 0.88
   2 ?   -0.5   0.0     0.072   2.5e+02      26      83 ..     170     229 ..     155     235 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.6e-05
   PF10508.4  71 lddlienlqevlqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedls 134
                 + +l++nl ++++  lk+++p+++ l+++ ++ +v++ ++ ++ +  ++ ++ +l  ++++ +s
  MMETSP0890-20130614|6789_1  48 PLELAPNLVVAVELRLKSKNPKIQGLAVTLIETCVQNGSAEIHGAVGSKAFLSVLSSVAETSSS 111
                 56789***************************************99999888888888877655 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.072
   PF10508.4  26 ksaisaspelealsesilfdclntn...kreqvtlcveiLkrllktlalddlienlqevlq 83 
                 +s+ +++++ +a+ e ++++ l+++     e+++lc e+L +  + + +dd++ ++  +l+
  MMETSP0890-20130614|6789_1 170 SSNSQQEQNSSAV-EDAALAKLQADlnvVAEKINLCNEMLPNSPGIENGDDALAEVVGFLE 229
                 4555555555555.44455555555545589999999999988888888888877766665 PP

>> PF10667.4  Protein of unknown function (DUF2486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0018       6.2     131     180 ..     149     200 ..     128     203 .. 0.71
   2 ?    4.8   2.4    0.0094        32      69     132 ..     298     361 ..     240     395 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0018
   PF10667.4 131 aeatelpaadaapdavppaaasaavpeiaaa.aaeaaaaltdedAq..hiAER 180
                  +++ +p  ++ap++  paa+ +++ + +++ +a + aal+ ++A+  ++AE+
  MMETSP0890-20130614|6789_1 149 RGVA-FPERSDAPPVFTPAAHTSSNSQQEQNsSAVEDAALAKLQADlnVVAEK 200
                 4444.899999999999999988887776664566666676666652278887 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0094
   PF10667.4  69 aaesvavePvptpevpavelPaddtdapaepaaaeevvaeraaameaplpsaLaaddaaaesae 132
                 + + +  +Pv +p +  + +P +d +    + +a+ +++  a++ ++++p + a  +a+++  +
  MMETSP0890-20130614|6789_1 298 GGNDTPLQPVTAPAPISISQPLADMALEEDDDDASDALQTGARQPRMNQPPHPAMTTATTTDNS 361
                 44455679***************99999999999999999999999999999776666554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1248.63
//
Query:       MMETSP0890-20130614|6791_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       828  (0.0605617); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 1039.55
//
Query:       MMETSP0890-20130614|6794_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.34s 00:00:00.79 Elapsed: 00:00:00.81
# Mc/sec: 550.27
//
Query:       MMETSP0890-20130614|6798_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.84
# Mc/sec: 744.58
//
Query:       MMETSP0890-20130614|6799_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   23.8   0.0    3.8e-05   22.6   0.0    1.6  1  PF11907.3 Domain of unknown function (DUF3427)


Domain annotation for each model (and alignments):
>> PF11907.3  Domain of unknown function (DUF3427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.8e-09   3.8e-05     176     261 ..     181     272 ..     156     282 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.8e-09
   PF11907.3 176 kYeDyfis.pslfhWqSknnrslespegqrlinhker.......gik.........llLFvRkkkeedgegkpFyylGeakyvsheeeeekgskpvsitlkLe 261
                  Y++ f+   ++++W+ ++++   +p +qrlin+          + +         +lLF R+++      kpF+++G++ y+ h      ++ p+ + ++L+
  MMETSP0890-20130614|6799_1 181 CYKNVFLQgGQEISWFAQSRQWEGTPVIQRLINSDGGdiiddddN-NnntvleptnVLLFCREEN------KPFVFCGSLSYLGHD----PERVPIRFVWRLN 272
                 588888752689********************9987755544441.1568999999*********......*************99....57779*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.68
# Mc/sec: 1106.55
//
Query:       MMETSP0890-20130614|6800_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3749  (0.27421); expected 273.4 (0.02)
Passed bias filter:                      717  (0.0524429); expected 273.4 (0.02)
Passed Vit filter:                       328  (0.0239906); expected 13.7 (0.001)
Passed Fwd filter:                       109  (0.0079725); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.03u 0.46s 00:00:03.49 Elapsed: 00:00:02.16
# Mc/sec: 274.03
//
Query:       MMETSP0890-20130614|6802_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.3    7.2  11.1        6.4    6.3   3.0    2.3  2  PF10828.3 Protein of unknown function (DUF2570)


Domain annotation for each model (and alignments):
>> PF10828.3  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5    0.0015        20      19      69 ..     179     229 ..     170     244 .. 0.84
   2 ?    6.3   3.0   0.00047       6.4      25      85 ..     244     304 ..     236     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0015
   PF10828.3  19 wlwyqsqkidsLkaenkaqaqtieqqekankrLseaLeqErqAVekqqkia 69 
                 w  + + ++dsL  +  ++ qt+++ ++a k+  +++e  +q + k ++ a
  MMETSP0890-20130614|6802_1 179 WKASMATELDSLATNCFQRSQTLQRLHEAKKAYEKRIESAKQFISKAKDTA 229
                 5566678899*****************************999998887655 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00047
   PF10828.3  25 qkidsLkaenkaqaqtieqqekankrLseaLeqErqAVekqqkianelkrkveenaeevkt 85 
                   i++L a+ ++ +++i++  +   +  ++ + E     k+ +++++  ++ +e+ e+v+t
  MMETSP0890-20130614|6802_1 244 LVINQLTAQIEQVDKLINHYADSSSQFLQQFRAENASAVKINQKNDDGYQADTETSEQVTT 304
                 579****************************999865555555555555555666777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1155  (0.0844792); expected 273.4 (0.02)
Passed bias filter:                      525  (0.0383996); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.67
# Mc/sec: 1473.58
//
Query:       MMETSP0890-20130614|6801_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   24.8   0.1    1.6e-05   24.5   0.1    1.2  1  PF05903.9 PPPDE putative peptidase domain
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.017   14.9   0.0    1.1  1  PF05608.7 Protein of unknown function (DUF778)


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.4e-09   1.6e-05      94     132 ..      13      51 ..       5      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.4e-09
   PF05903.9  94 lsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPkwinr 132
                 l +e++++ Y+L + NCnhF+d++++   ++++P  +++
  MMETSP0890-20130614|6801_1  13 LFQEWNKKMYDLSTCNCNHFADAVLKAYGHGGLPGGYFS 51 
                 6679*********************99888888876665 PP

>> PF05608.7  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.5e-06     0.017      74     113 ..       2      40 ..       1     101 [. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.5e-06
   PF05608.7  74 etaefydralnatireFksadyslfsnnshsfvafvLeal 113
                 e+ +f++++ ++  +e+++++y+l ++n+ +f  +vL+a 
  MMETSP0890-20130614|6801_1   2 ESPQFWNKK-KDLFQEWNKKMYDLSTCNCNHFADAVLKAY 40 
                 667889887.677889*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.75
# Mc/sec: 341.88
//
Query:       MMETSP0890-20130614|6796_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00022   19.6   3.9    0.00026   19.3   2.3    1.3  1  PF09730.4  Microtubule-associated protein Bicaudal-D
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.034   13.8   0.1    1.7  1  PF08463.5  EcoEI R protein C-terminal
       0.87    9.6   4.2       0.57   10.2   1.2    1.9  2  PF13299.1  Cleavage and polyadenylation factor 2 C-terminal
        1.6    8.4   9.6        2.6    7.7   5.3    2.1  2  PF10211.4  Axonemal dynein light chain


Domain annotation for each model (and alignments):
>> PF09730.4  Microtubule-associated protein Bicaudal-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   2.3   7.6e-08   0.00026     287     432 ..      75     214 ..      63     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.6e-08
   PF09730.4 287 slqesqkqLeksekalseqkekvarLteklealrklqaskeqqaeedeekeegskedskeyevdikglevleckyrvavtevvelkkelkalkakyeeleeraedekdrleeevqklkeklssleksskedqekiaelekelrklt 432
                 +  e q q++  ++a+se+ +k + +++  + +r l  ++   ae +  ++ g++     +ev ++ +    +k ++ ++ + ++ + lk++ +k ++++ + + + d++e++v++l++k+ s+ek++  +qe+ +++ k+ ++ +
  MMETSP0890-20130614|6796_1  75 KFVEYQGQVKALKGAVSEYGAKCKAMSDASSSMRVLA-TQTLIAEGNPGAAWGENRV--GFEVSLNETG---TKAEEITKMIHNYYALLKSILEKTDKTATKGRRDADHYEKKVEALTKKVMSTEKTCATRQEREEKMLKDAETKR 214
                 56789****************************9954.5556666666666666665..7888888877...6777777888888888999999999999999*******************************999999887765 PP

>> PF08463.5  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   9.9e-06     0.034      28      92 ..     225     300 ..     222     309 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.9e-06
   PF08463.5  28 wnd.keltkellkeLeeklikdealrteeelwk.............eneeeltdlvdlirkivgldeplltreervera 92 
                 w+d  ++ ke l++L+++l+  e +++ +++w+             + +e+++++v ++  +v ld    + ++++e+ 
  MMETSP0890-20130614|6796_1 225 WEDpLPVAKEKLEKLKRRLARNEHKFEVAKVWQdrsinlgvltfttAVDENDQEIVPILQALVELD---ANLKQAAEAT 300
                 78878999*************************************988888899************...6667776665 PP

>> PF13299.1  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   0.00017      0.57      29     118 ..     162     251 ..     140     254 .. 0.70
   2 ?   -2.6   0.0       1.5     5e+03      48      48 ..     324     324 ..     277     350 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
   PF13299.1  29 egseeaeeeenqeekklnsstesslkaveeeekeeesskdkneqspeldklpanealesatrsa.sqslfiGdlrLadlkklllsagikAe 118
                 e++++++++   ++++ +++ e+ +k+v ++ek   ++++++e+  ++++++ +++ +s+t    +++l +   +L +lk++l+++++k e
  MMETSP0890-20130614|6796_1 162 EKTDKTATKGRRDADHYEKKVEALTKKVMSTEKTCATRQEREEKMLKDAETKREPP-PSKTHYFwEDPLPVAKEKLEKLKRRLARNEHKFE 251
                 32222323344444667777777777777766666566666666666666666665.77788888*********************99976 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.5
   PF13299.1  48 s 48 
                 +
  MMETSP0890-20130614|6796_1 324 N 324
                 1 PP

>> PF10211.4  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.27   9.2e+02     118     158 ..      65     105 ..      60     114 .. 0.81
   2 ?    7.7   5.3   0.00076       2.6      91     162 ..     144     215 ..     143     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.27
   PF10211.4 118 aeqgkselekeikkleeekeeLekevkelekkleeiekree 158
                 ++ + +e +++  +++ ++++L+  v e  +k+++++ +++
  MMETSP0890-20130614|6796_1  65 KDATYNEARSKFVEYQGQVKALKGAVSEYGAKCKAMSDASS 105
                 55667888999999999999999999999999999887765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00076
   PF10211.4  91 delrmtiaaYqtLyessvafglrkaleaeqgkselekeikkleeekeeLekevkelekkleeiekreeeere 162
                 +e++++i++Y +L++s ++   + a++   + +++ek++++l +++ + ek  ++ +++ e++ k++e++re
  MMETSP0890-20130614|6796_1 144 EEITKMIHNYYALLKSILEKTDKTATKGRRDADHYEKKVEALTKKVMSTEKTCATRQEREEKMLKDAETKRE 215
                 68999999999*****99999999999999999999999999999999999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1018  (0.0744587); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.73
# Mc/sec: 1168.63
//
Query:       MMETSP0890-20130614|6804_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   66.3   0.0    4.1e-18   65.3   0.0    1.5  1  PF02291.10 Transcription initiation factor IID, 31kD subunit
  ------ inclusion threshold ------
      0.088   12.8   0.0       0.19   11.7   0.0    1.5  1  PF00125.19 Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> PF02291.10  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   5.9e-22   4.1e-18      17     127 ..       7     118 ..       2     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 5.9e-22
                 HHHHHHHHTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT-..-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PF02291.10  17 llisiLkelgiqeyeprvvlqlldfafrytqkilddakvysehakkanieveDvrlAiaarl..dksftgppprelllqlAaernkkpLPqikpsyGlrLPpdryCltaknyk 127
                 + + +L ++gi+ ye rvv  +l+  +r +q il +a+ ++ ha+++  +v+D+ l  +  +  ++   + p re +l+lA+  n++p+ qi +  GlrLPp  + lt++ y+
  MMETSP0890-20130614|6804_1   7 VAHALLVSMGIDRYEGRVVGVVLEHMHRSVQAILTEARELAIHAGRDILQVNDIELVDDLAAedGYCASPLPSRETMLELARACNSEPI-QIPDGHGLRLPPPEFQLTGQCYQ 118
                 6799****************************************************87755511556677789***************9.9******************9987 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05      0.19      45      71 ..      37      63 ..      18      64 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
  PF00125.19 45 eeiledAgllaehakrktitprdiqlA 71
                  il++A  la+ha+r  ++  di+l+
  MMETSP0890-20130614|6804_1 37 QAILTEARELAIHAGRDILQVNDIELV 63
                569*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       793  (0.0580018); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:01.04
# Mc/sec: 474.66
//
Query:       MMETSP0890-20130614|6803_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   16.4   1.0      0.014   14.9   0.7    1.8  1  PF00628.24 PHD-finger
  ------ inclusion threshold ------
      0.013   15.1   1.2      0.028   14.0   0.8    1.5  1  PF14446.1  Prokaryotic RING finger family 1
      0.039   13.8   0.1      0.085   12.7   0.1    1.5  1  PF10217.4  Uncharacterized conserved protein (DUF2039)


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   3.1e-06     0.014       1      30 [.     474     505 ..     474     513 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.1e-06
                 SBTTTTCTCTTS-EE.EBSSSS.SEEETTTSS CS
  PF00628.24   1 rCkiCgesdeegelv.lCdgCk.ewfHlkClg 30 
                 rC++Cg+ d ++++v  C +C+ e fH +Cl+
  MMETSP0890-20130614|6803_1 474 RCALCGQVDIGDDFVtPCAQCHgEIFHRACLE 505
                 6******6665555516*****9*******97 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   6.1e-06     0.028       6      37 ..     473     505 ..     471     508 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.1e-06
   PF14446.1   6 trCavCgkklkdkddivv.CpeCg.apyHreCwe 37 
                 +rCa+Cg+    +dd v  C +C+  ++Hr C e
  MMETSP0890-20130614|6803_1 473 ARCALCGQVDI-GDDFVTpCAQCHgEIFHRACLE 505
                 69*****8764.6776644****7358*****86 PP

>> PF10217.4  Uncharacterized conserved protein (DUF2039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.9e-05     0.085      23      80 ..     440     497 ..     426     506 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
   PF10217.4  23 kikslaltslCerCkekieWkvkygKYkalkeekkCnkCeektvkkaYhsiCdkCakk 80 
                 ++++  ++ l +r +   +Wk+    Y++    ++C+ C + ++ + + + C +C  +
  MMETSP0890-20130614|6803_1 440 ALRRRVHSALADRSTVACAWKLACILYERGAPLARCALCGQVDIGDDFVTPCAQCHGE 497
                 56667788899999999**************************************755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.84
# Mc/sec: 1560.48
//
Query:       MMETSP0890-20130614|6806_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-17   61.5   0.1    7.1e-16   58.1   0.1    2.3  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    4.1e-10   39.3   0.0    8.3e-10   38.4   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    7.3e-07   28.8   0.1    1.3e-06   28.0   0.1    1.5  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    0.00036   20.3   0.0    0.00067   19.4   0.0    1.5  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1   2.1e-19   7.1e-16       1      72 [.      21     113 ..      21     118 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 2.1e-19
                 EE--TTSHHHHHHHHHHHH----EEE----TT...................TT..HHHHHHH-TT--SSEEE----EEESHHHHHHHHHHH-- CS
   PF13417.1   1 LygspfSpyarkvrlaLeekglpyelvevtpg...................kk..rpellalnpkgkvPvLeddgevltdSlvIieyLeerfp 72 
                 Ly+s+f+p+a+++++a+eek + y+++e++p+                   kk   p++ + +pkg+vP+ + ++e l +S++Iiey++ +f+
  MMETSP0890-20130614|6806_1  21 LYSSWFCPFAQRAWIAAEEKCVNYRWEEINPYqvdprqpggytkkqlplaeKKmlYPQFVQASPKGLVPAVQCGDELLAESQPIIEYIDLKFQ 113
                 9****************************9663333333344333222222224455669999**************************8887 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.4e-13   8.3e-10       1      68 [.      26     109 ..      26     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.4e-13
                 --HHHHHHHHHHHH----EEEEE..................EH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHH CS
   PF13409.1   1 acPwahRvlialalkgledeisv..................vplepkgfekseellalsprgtVPvLwdkdgtvineSseIlryln 68 
                 +cP+a+R++ia ++k + ++ ++                  +pl +k +   +++ ++sp+g VP+ ++ +++ ++eS+ I++y++
  MMETSP0890-20130614|6806_1  26 FCPFAQRAWIAAEEKCVNYRWEEinpyqvdprqpggytkkqLPLAEKKMLY-PQFVQASPKGLVPAVQC-GDELLAESQPIIEYID 109
                 7*******************9996666666666666655554444444444.478*************6.889***********97 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   3.9e-10   1.3e-06       3      55 ..     156     217 ..     125     234 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.9e-10
                 HHS--GGGTT-THGGG-----...-SS.-------HHHHHHHHHHHHHHHHH---......- CS
   PF13410.1   3 aleraraqlraaLdaleahLa...dgpfllGdrpslaDialapflvrldaagpgl......d 55 
                 a + a a+l ++ +++++ +a   +gpf++Gdr+s+ D+ +apf++r+ ++g ++       
  MMETSP0890-20130614|6806_1 156 ARQLAYADLIEGCKTFSRAMApatQGPFFMGDRFSYTDVSFAPFFQRILVVGSHYrqislpQ 217
                 444588889999999999999555555*********************99965444444441 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     2e-07   0.00067      35      94 ..     169     235 ..     132     236 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2e-07
                 HHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.......HTT-HHHHHHHHHHHHS CS
  PF00043.20  35 evlealeeelsgkkylvGdkltlADialfpalewlqrldgnfl.......eeefPklkawlkriaar 94 
                 + +++  ++  +  +++Gd++++ D+ ++p+++ +  ++            ++   l+ w++ + +r
  MMETSP0890-20130614|6806_1 169 KTFSRAMAPATQGPFFMGDRFSYTDVSFAPFFQRILVVGSHYRqislpqdDADITRLMHWWDACKNR 235
                 4444445555599********************5544444444444567889999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.87
# Mc/sec: 886.93
//
Query:       MMETSP0890-20130614|6808_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-20   71.0   0.0    8.2e-20   70.9   0.0    1.0  1  PF00725.17 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00725.17  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0     6e-24   8.2e-20      18      95 ..       1      79 [.       1      81 [. 0.96

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 6e-24
                HHHTTSS-HHHHHHHHHH.-------HHHHHH---HHHHHHHHHHHCTCCCH.GG-..HHHHHHHHTT----------- CS
  PF00725.17 18 lveegvatpediDaamkkglGlpmGpfelsdlvgldvakkilevlaeelger.ayapsplleklveagrlgrktgkgfy 95
                ++e+  a++ diD+am++g+G pmGp+ l+d+vgld+  +il+ +++e++ + a+  ++ le  v+ag+lgrk+g+gfy
  MMETSP0890-20130614|6808_1  1 MAERRDASISDIDTAMQLGAGNPMGPILLCDYVGLDTTLNILRGWKQEFPHEpAFFVPNALEAKVKAGKLGRKSGEGFY 79
                678889********************************************99988889********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.99
# Mc/sec: 234.79
//
Query:       MMETSP0890-20130614|6809_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-19   70.1   0.1    1.9e-19   69.7   0.0    1.2  1  PF02308.11 MgtC family
  ------ inclusion threshold ------
      0.071   12.2   4.3        0.1   11.7   3.0    1.3  1  PF06197.8  Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> PF02308.11  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   2.8e-23   1.9e-19      29     120 ..       3     100 ..       1     113 [. 0.92

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 2.8e-23
  PF02308.11  29 liavgsalfvlvsikaeedssklaedpsriaaqvvsgigflgagvilreg.......dnvsGlttaatiwvtaaiGlligaglyklavigtilvlvill 120
                 l+++gs++f++ s+ a+ +s+  a d sr+aa + sg+gflgag+i +++       ++v Gltta ++w +aa G+++g gl   a+++t ++l++l 
  MMETSP0890-20130614|6809_1   3 LVSLGSCVFTIDSMFAFSSSP-DAWDSSRVAAAIPSGVGFLGAGLIYKQSprtpeehHEVHGLTTASSVWLSAAAGIAAGGGLAVIAFFSTCTMLIVLR 100
                 89******************8.455************************9999999999**********************************997654 PP

>> PF06197.8  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.0   1.5e-05       0.1      64     145 ..      21      97 ..       1     107 [. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.5e-05
   PF06197.8  64 argkagrvgallla.vaglglvlvglfpedtgggspslsgviHglaslvaflalalavlllasaarrrawallrllglvalll 145
                 ++  a+  ++++ a  +g+g++++gl  +  + + p+ ++ +Hgl+++  + ++a+a ++++     ++ a+++++++ ++l+
  MMETSP0890-20130614|6809_1  21 SSPDAWDSSRVAAAiPSGVGFLGAGLIYKQSP-RTPEEHHEVHGLTTASSVWLSAAAGIAAG-----GGLAVIAFFSTCTMLI 97 
                 34444444444444259********6666655.3567************************9.....6666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.79
# Mc/sec: 700.71
//
Query:       MMETSP0890-20130614|6811_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.47s 00:00:00.85 Elapsed: 00:00:01.00
# Mc/sec: 510.42
//
Query:       MMETSP0890-20130614|6810_1  [L=1194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   25.1   0.0    3.4e-05   23.9   0.0    1.6  1  PF01909.18 Nucleotidyltransferase domain
    0.00019   21.1   0.1    0.00059   19.6   0.1    1.9  1  PF03828.14 Cid1 family poly A polymerase


Domain annotation for each model (and alignments):
>> PF01909.18  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0     5e-09   3.4e-05       3      39 ..     577     614 ..     575     620 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 5e-09
                 HHHHHHHCT-T.TSEEEEE-ETTTT---TT-EEEEEEE CS
  PF01909.18   3 kllerlkelyg.vakvvlfGSyarGtllpgSDiDllvv 39 
                 ++  ++k  +g  ++v+l+GS  +G+ lp SD+D++v 
  MMETSP0890-20130614|6810_1 577 NVSAVVKAMWGpHVDVALYGSSLTGLDLPSSDVDIVVR 614
                 567789999***************************95 PP

>> PF03828.14  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   8.6e-08   0.00059       2      30 ..    1090    1118 ..    1089    1149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 8.6e-08
                  ---HHHHHHHH--------SEEB------ CS
  PF03828.14    2 lgeLLigFFeyYgseFdyenvvisirtgg 30  
                  lg LL+ FF+++g++Fd   ++is+ +g 
  MMETSP0890-20130614|6810_1 1090 LGYLLVFFFDFFGRQFDPASQAISVLRGD 1118
                  899*********************96654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1149  (0.0840404); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.59u 0.50s 00:00:02.09 Elapsed: 00:00:01.58
# Mc/sec: 1810.92
//
Query:       MMETSP0890-20130614|6814_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.7    7.7   5.5        1.6    7.8   3.8    1.0  1  PF09520.5  MjaII restriction endonuclease
        2.7    7.3   6.5          3    7.1   4.5    1.0  1  PF05405.9  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
        3.5    7.3   8.0          4    7.1   5.5    1.1  1  PF00472.15 RF-1 domain


Domain annotation for each model (and alignments):
>> PF09520.5  MjaII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.8   0.00036       1.6      73     127 ..       4      60 ..       1      65 [] 0.76

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00036
   PF09520.5  73 eiariiAegthavaekqydvqgkidseakekideilnklkk..kenlakkeseneel 127
                 eia+i A++  a a++++ + +++++e+ +k++++ +  k   +e++ ++ + ++++
  MMETSP0890-20130614|6814_1   4 EIAKIEAAEEKARAQNKQAALTAMEAERADKLRQLAQIEKDaaRERKLNVARAKKAM 60 
                 89********************************97665542255555555554444 PP

>> PF05405.9  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5   0.00065         3      45     104 ..       4      65 .]       2      65 .] 0.95

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00065
                 XXXXXXXXXXXXXX--------------..-----------TTTTTTTTTTTSSTTHHHHTT CS
   PF05405.9  45 riekiqeelnqsrnekekalkerieqqk..klqslveetksLfevskeqvaleaeaaerelq 104
                 +i ki++  +++r+++++a  +++e ++  kl++l+++ k+     k +va+  +a e e+q
  MMETSP0890-20130614|6814_1   4 EIAKIEAAEEKARAQNKQAALTAMEAERadKLRQLAQIEKDAARERKLNVARAKKAMEAERQ 65 
                 799****************999999999889***************************9987 PP

>> PF00472.15  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.5   0.00088         4      47      96 ..       7      55 ..       3      65 .] 0.58

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00088
  PF00472.15 47 vvkaqeeRsqeqNrekAlerLkallaeaelkkkrektketrkskkrrler 96
                 ++a ee+ + qN+++Al  ++a  a+  ++  + +++++r+ k + ++r
  MMETSP0890-20130614|6814_1  7 KIEAAEEKARAQNKQAALTAMEAERADKLRQLAQIEKDAARERKLN-VAR 55
                6899*****************8754444333333333333333322.111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1217  (0.089014); expected 273.4 (0.02)
Passed bias filter:                      593  (0.0433733); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 268.56
//
Query:       MMETSP0890-20130614|6812_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.82
# Mc/sec: 908.86
//
Query:       MMETSP0890-20130614|6813_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-05   22.6  31.7    4.8e-05   22.1  22.0    1.2  1  PF10446.4  Protein of unknown function (DUF2457)
    0.00036   19.0  16.2    0.00049   18.6  11.2    1.2  1  PF03344.10 Daxx Family
     0.0012   16.8  13.7     0.0015   16.5   9.5    1.2  1  PF02724.9  CDC45-like protein
     0.0015   16.4  21.7     0.0019   16.0  15.1    1.2  1  PF04147.7  Nop14-like family
  ------ inclusion threshold ------
      0.074   11.0  13.6        0.1   10.5   9.4    1.1  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
        0.8    8.5  19.3        1.3    7.9  13.4    1.3  1  PF09073.5  BUD22
        1.5    7.9  28.1        2.2    7.3  19.5    1.2  1  PF05285.7  SDA1
        3.6    5.8  13.0        4.3    5.6   9.0    1.2  1  PF06957.6  Coatomer (COPI) alpha subunit C-terminus
          9    4.2   8.7         10    4.1   6.0    1.2  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1  22.0   3.2e-08   4.8e-05      56     131 ..      39     118 ..      16     153 .. 0.61

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.2e-08
   PF10446.4  56 deddeeddddeDeddddddddeDdeddelddddstladaseaddGnktdneagfadS.dDedd....dgseyefWapkalt 131
                 d++d+edddd+D++ddddddd+D+edde+dd+++++ d++ +dd ++ +++   a   d e+d    ++s  ++W pk  +
  MMETSP0890-20130614|6813_1  39 DDEDDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDD-DDDDYENEEDLLAAMQiDMENDeiisAESHAVLWVPKYYN 118
                 3334444444555555555555555555455554444444.4677777776655543133444222268999****99754 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  11.2   3.2e-07   0.00049     443     504 ..      40     101 ..      25     181 .. 0.58

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.2e-07
  PF03344.10 443 ekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedleassegegddeeeeedee 504
                 ++ ++++d++dd+++++d++++ee++ee++e+ee  d++ ++d e+ ++     + + e++e
  MMETSP0890-20130614|6813_1  40 DEDDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDDDYENEEDLLAAMQIDMENDE 101
                 33334444444444444444444444444444444445555555555555555555555554 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   9.5     1e-06    0.0015     128     172 ..      42      86 ..      11     153 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1e-06
   PF02724.9 128 keeeeeesdedsdseddeeeeessasekrksesdedeeddddeed 172
                 ++e+++++d+++d++dd+++ee ++++++++e d+d++ddd e++
  MMETSP0890-20130614|6813_1  42 DDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDDDYENE 86 
                 122222222222222222222222222222222222222222222 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  15.1   1.2e-06    0.0019     336     389 ..      40      88 ..       5     145 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-06
   PF04147.7 336 eeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee 389
                 +e     ++++d+d+++ ddd++++++++d++e++e+ee +++dd++++e+ee+
  MMETSP0890-20130614|6813_1  40 DE-----DDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDDDYENEED 88 
                 22.....22222222222222222333333333444444444444444444444 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   9.4   6.6e-05       0.1     222     303 ..      38     175 ..      29     203 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.6e-05
   PF05327.6 222 lddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeedee..........................................................akstkkikelsekLDailellfehleseftseelde 303
                 +dd dde++++ +++++++++++ +++d++d+e+e+ +++d++d +                                                          + ++   ++++ kLD +l   f+ ++s+f+++e+d 
  MMETSP0890-20130614|6813_1  38 IDDEDDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDD-DyeneedllaamqidmendeiisaeshavlwvpkyynseyarlfahvsmghgetskmkaTLQEGGSEAATLKLDLLLAE-FNAMKSRFSKNETDL 175
                 55555444444444444333333333333333333333333322.2346778888889999999999999999999999999999999999999999988887544555556667788887776.567777888877776 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  13.4   0.00083       1.3     162     220 ..      40      98 ..      28     144 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00083
   PF09073.5 162 kkedesedkdeeessesedssddeeseeddsdsdeeeesdsedlsqydallvsssdees 220
                 +++de+ d+d++ + + +d +d+e++eedd++++++ ++d++d++  ++ll++ + + +
  MMETSP0890-20130614|6813_1  40 DEDDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDDDYENEEDLLAAMQIDME 98 
                 44444445555555555555555555555555555555555566666666665544444 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  19.5    0.0014       2.2      94     145 ..      39      88 ..      15     120 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0014
   PF05285.7  94 eedddeeWdvdsdeededeDeegewvdvesdeeeessDsedeeeeseeeeee 145
                 +++dde+ d d+d++d+d+D++++++d+e+d+e+e+ D++d++++ e+ ee+
  MMETSP0890-20130614|6813_1  39 DDEDDED-DDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDDDYEN-EED 88 
                 2333333.2345555555555566666666655555555555442222.222 PP

>> PF06957.6  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.0    0.0029       4.3      29     105 ..      36     110 ..       7     172 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0029
   PF06957.6  29 aaldidvvgeddwGedadlgldedelveaedgladaeeGeneedeeegGWdveddLelPpeldvpkdkagnadsdvf 105
                 a++  d  +++d   d d + d+d++++ ed + d+e+ e ++d+++  ++ e+dL    ++d+ +d+  +a+s+  
  MMETSP0890-20130614|6813_1  36 ANI--DDEDDEDDDDDDDHDDDDDDDDDEEDDEEDDENEEMDDDDDDDDYENEEDLLAAMQIDMENDEIISAESHAV 110
                 344..444444434666776667778888888888888889999999**********99999999998888877654 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.0    0.0066        10     662     719 ..      40      96 ..       4     177 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0066
   PF03115.9 662 aeepaedlvseeetdtetestedesdeldrfdlkassgsesededennrvtllstlin 719
                 +e++++d+ ++++ d +++++++e+de d    ++ ++++++d+ en+  +l +  i+
  MMETSP0890-20130614|6813_1  40 DEDDEDDDDDDDHDDDDDDDDDEEDDEEDDE-NEEMDDDDDDDDYENEEDLLAAMQID 96 
                 2233333223333333333333333333322.23333334444346665555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                       122  (0.00892335); expected 13.7 (0.001)
Passed Fwd filter:                        47  (0.00343768); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.02u 0.45s 00:00:01.47 Elapsed: 00:00:00.99
# Mc/sec: 760.06
//
Query:       MMETSP0890-20130614|6818_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-16   58.6   0.1    6.8e-16   57.5   0.0    1.6  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    5.5e-12   45.4   0.0      1e-11   44.5   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.7e-09   36.6   0.1    4.8e-09   35.8   0.1    1.4  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.047   12.9   0.0    1.1  1  PF06314.6  Acetoacetate decarboxylase (ADC)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0     2e-19   6.8e-16       1      69 [.      44     113 ..      44     114 .. 0.97

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 2e-19
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 +++g +p+   e++++++Fs+fG++++++++r  +tg skg++f eFes+e a+ A  ++n++ +g+++l
  MMETSP0890-20130614|6818_1  44 IYIGHIPHGFYEDQMEKFFSQFGQVNNVRVSRSkRTGGSKGYGFLEFESSEVARIAALTMNKYLMGNKQL 113
                 8**************************************************************9999986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0     3e-15     1e-11       1      66 [.      44     110 ..      44     113 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3e-15
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgr 66 
                 +y++ +p    e++  +ffs++g v++vr+ r+k+ g ++g++f+efes e A+ a   +n+ l+g 
  MMETSP0890-20130614|6818_1  44 IYIGHIPHGFYEDQMEKFFSQFGQVNNVRVSRSKRtGGSKGYGFLEFESSEVARIAALTMNKYLMGN 110
                 89****************************************************9999999777765 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   1.4e-12   4.8e-09       3      53 ..      60     115 ..      60     117 .. 0.96

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.4e-12
   PF13893.1   3 klfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 k+fs+fG+v+++++ r+k     +g++f ef++ e Ar a  ++n+ ++++k+L v
  MMETSP0890-20130614|6818_1  60 KFFSQFGQVNNVRVSRSKrtggsKGYGFLEFESSEVARIAALTMNKYLMGNKQLVV 115
                 68*******************999****************************9987 PP

>> PF06314.6  Acetoacetate decarboxylase (ADC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.4e-05     0.047     125     217 ..       8     108 ..       3     112 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.4e-05
   PF06314.6 125 tverggkrlaeltvtlkerapdseealpslka..pffllkiips.vdggkad.....vtelvryelsdtrvgeawtGpaslelepsaddplaelpvlevls 217
                 ++++  krl++++ +lke++++s+e+ ++++a  +++++ +ip+   + +++     + ++ + ++s+++ ++  +G + le+e+s+ + +a l ++++l 
  MMETSP0890-20130614|6818_1   8 KAKALSKRLVNIESELKEKVSSSKEKIEEKEAdsKVIYIGHIPHgFYEDQMEkffsqFGQVNNVRVSRSKRTGGSKGYGFLEFESSEVARIAALTMNKYLM 108
                 5666789*************9999999999999***********8666666689889889999999999999************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1060  (0.0775307); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 878.66
//
Query:       MMETSP0890-20130614|6821_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-21   74.0   3.3    3.3e-15   55.1   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
     0.0014   16.7   1.9       0.13   10.2   0.3    2.0  2  PF11715.3  Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.15   11.6   0.3       0.34   10.4   0.0    1.8  2  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   7.8e-08   0.00035      20      39 .]       2      21 ..       1      21 [. 0.93
   2 !   55.1   0.1   7.2e-19   3.3e-15       2      39 .]      26      63 ..      25      63 .. 0.96

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.8e-08
                ESSSTEEEEEETTSEEEEEE CS
  PF00400.27 20 spdgpllasgSrDgtirlWd 39
                s dg +++++S+D+t ++Wd
  MMETSP0890-20130614|6821_1  2 SKDGGRVVTASDDRTAKIWD 21
                56899**************9 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 7.2e-19
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                +++ tlrgHt++V+++afspdg++++++S Dgt r+W+
  MMETSP0890-20130614|6821_1 26 TLLLTLRGHTDWVNACAFSPDGTRVITASNDGTARVWN 63
                7889*********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.3   2.9e-05      0.13     234     257 ..       8      31 ..       3      49 .. 0.80
   2 !    7.3   0.0   0.00022      0.99     221     248 ..      41      64 ..      31      65 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.9e-05
   PF11715.3 234 vftlsrDgkLRvWnletgqclrtt 257
                 v+t s D++ ++W++ tg++l t 
  MMETSP0890-20130614|6821_1   8 VVTASDDRTAKIWDTLTGTLLLTL 31 
                 789****************96554 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00022
   PF11715.3 221 ldvsssevegqtfvftlsrDgkLRvWnl 248
                  ++s+    + t v+t s Dg+ RvWn 
  MMETSP0890-20130614|6821_1  41 CAFSP----DGTRVITASNDGTARVWNA 64 
                 55555....566788************7 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.51   2.3e+03      17      24 ..       2       9 ..       2      15 .. 0.68
   2 ?   10.4   0.0   7.6e-05      0.34      14      28 ..      41      55 ..      39      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.51
                -----EEE CS
   PF07676.7 17 SPDGkkiv 24
                S+DG + v
  MMETSP0890-20130614|6821_1  2 SKDGGRVV 9 
                67887765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 7.6e-05
                EEE-----EEEEEE- CS
   PF07676.7 14 PawSPDGkkivFtSn 28
                 a+SPDG++ + +Sn
  MMETSP0890-20130614|6821_1 41 CAFSPDGTRVITASN 55
                69*******987777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 264.01
//
Query:       MMETSP0890-20130614|6819_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-06   25.3  31.2      0.048   13.2   2.2    5.3  5  PF02178.14 AT hook motif
  ------ inclusion threshold ------
      0.044   13.6   1.1       0.12   12.2   0.7    1.7  1  PF13480.1  Acetyltransferase (GNAT) domain
        0.1   12.5   0.2       0.25   11.2   0.1    1.7  1  PF00583.19 Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> PF02178.14  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00035       1.6       4      11 ..       2       9 ..       1      11 [. 0.86
   2 !   13.2   2.2   1.1e-05     0.048       1      11 [.      34      44 ..      34      46 .. 0.89
   3 !    9.0   2.1   0.00025       1.1       2       9 ..      60      67 ..      60      69 .. 0.94
   4 ?   -3.4   0.0       2.7   1.2e+04       7      10 ..      95      98 ..      95     100 .. 0.81
   5 !   11.0   1.1   5.4e-05      0.25       1       9 [.     110     118 ..     110     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00035
  PF02178.14  4 RGRPrKaa 11
                RGRPrK+ 
  MMETSP0890-20130614|6819_1  2 RGRPRKTE 9 
                ******87 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.1e-05
  PF02178.14  1 krkRGRPrKaa 11
                k+kRGRPrK+ 
  MMETSP0890-20130614|6819_1 34 KKKRGRPRKSE 44
                8********96 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00025
  PF02178.14  2 rkRGRPrK 9 
                rkRGRPrK
  MMETSP0890-20130614|6819_1 60 RKRGRPRK 67
                9******9 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 2.7
  PF02178.14  7 PrKa 10
                PrK+
  MMETSP0890-20130614|6819_1 95 PRKN 98
                9*98 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 5.4e-05
  PF02178.14   1 krkRGRPrK 9  
                 ++kRGRPrK
  MMETSP0890-20130614|6819_1 110 VKKRGRPRK 118
                 69******9 PP

>> PF13480.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   2.7e-05      0.12       9      47 ..     420     461 ..     418     484 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.7e-05
   PF13480.1   9 rkrrrleelg.evefevatdpedldalldlfraqwarr..pd 47 
                 ++++r e+   e+++++  d++d++a+++l++aq++rr   +
  MMETSP0890-20130614|6819_1 420 KRLKRSERTAcELRIRALVDAADAAAAIALHEAQHERRddDG 461
                 556666664447899***********************7433 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.5e-05      0.25      39      82 ..     495     540 ..     493     541 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.5e-05
                 TTT-HHHHHHHHHHHHHHTT...HSEEEEEEETTCHHHHHHHHHTT- CS
  PF00583.19  39 gqGiGkaLleallekarerg...lerielevesgndraiklYeklGF 82 
                 g G G++L+e+++ek    g   ++r +  v  +++ ai++Ye  GF
  MMETSP0890-20130614|6819_1 495 GLGCGRRLVETAIEKFCFAGemdADR-QFLVLQATHNAIHFYEQRGF 540
                 7899*******999865544443666.6667777788*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.37s 00:00:01.44 Elapsed: 00:00:00.92
# Mc/sec: 1891.04
//
Query:       MMETSP0890-20130614|6820_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-10   40.1   0.0    5.3e-10   38.8   0.0    1.7  1  PF00168.25 C2 domain
    7.5e-08   31.7   0.2     0.0016   17.9   0.0    2.8  2  PF12799.2  Leucine Rich repeats (2 copies)
    2.5e-07   29.6   3.1        4.4    7.6   0.1    5.2  4  PF00560.28 Leucine Rich Repeat
    7.8e-05   22.2   1.0      0.045   13.3   0.0    3.4  3  PF13855.1  Leucine rich repeat
     0.0008   19.0   4.4       0.83   10.0   0.1    4.6  4  PF13504.1  Leucine rich repeat
     0.0081   16.0   6.5        1.1    9.4   0.2    4.9  6  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.052   12.9   0.3      0.052   12.9   0.2    3.7  3  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.7e-13   5.3e-10       1      84 [.     583     670 ..     583     671 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.7e-13
                 EEEEEEEESS--S-S.TSSSS-EEEEEEEECTTE..EEEEE--BSS-SSEEEEEEEEEEESCGGGTE..EEEEEEECHSSSCSEE---E CS
  PF00168.25   1 LkvkvieAknLpnkd.kngtsdpyvkvslggaks..kkkrTrvikntlnPvWnekftfevvaeelae..leleVkdedrfgkddflGea 84 
                 L++++i+A++Lp+++ +++t d+y++ sl       +k++T+v+++t  P W ++++++ ++    +   ++e+ ++ r+g+d+ + +a
  MMETSP0890-20130614|6820_1 583 LELNIISARDLPPMKhSTQTADCYAVASLTTISGicHKRKTQVVRDTRFPEWRQSLVLPAPKSGN-DthCTIEILHRPRIGEDEHVAQA 670
                 789************6666************8889************************444444.4589***********99988876 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013      0.25       5      42 ..      64     106 ..      61     113 .. 0.80
   2 !   17.9   0.0   8.1e-07    0.0016       3      38 ..     134     172 ..     132     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   PF12799.2   5 vLdLsnNnIk.dlppelanLp....nLktLnLsnNpisdlsaL 42 
                 ++dLs+N +k +l+  ++ ++    +Lk L++s++++ +l+ +
  MMETSP0890-20130614|6820_1  64 EIDLSGNALKgSLSDGFGLWQyalgSLKRLDVSRCQLRSLRGI 106
                 579******9889987665444455*************98654 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 8.1e-07
   PF12799.2   3 LevLdLsnNnIkdlppe...lanLpnLktLnLsnNpisd 38 
                 Le+LdLs+N + +l+      ++Lp L++L++ +Np+++
  MMETSP0890-20130614|6820_1 134 LETLDLSGNGLWNLGDCiemCSRLPMLRHLSVRGNPLCE 172
                 9********9888776533378**************984 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0094        18       2      19 ..      62      80 ..      61      83 .. 0.86
   2 !    7.6   0.1    0.0023       4.4       1      16 [.      89     104 ..      89     115 .. 0.82
   3 !    5.7   0.0    0.0094        18       2      12 ..     134     144 ..     133     144 .. 0.92
   4 !    6.9   0.0    0.0037       7.3       2      16 ..     160     175 ..     159     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0094
                ESEEEETSSBCB.CHHHHH CS
  PF00560.28  2 LeeLdLsgNnlt.slppsl 19
                + e+dLsgN l+ sl++++
  MMETSP0890-20130614|6820_1 62 IVEIDLSGNALKgSLSDGF 80
                679*********9999987 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0023
                 TESEEEETSSBCBCHH CS
  PF00560.28   1 nLeeLdLsgNnltslp 16 
                 +L++Ld+s+++l sl 
  MMETSP0890-20130614|6820_1  89 SLKRLDVSRCQLRSLR 104
                 69**********9954 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0094
                 ESEEEETSSBC CS
  PF00560.28   2 LeeLdLsgNnl 12 
                 Le+LdLsgN l
  MMETSP0890-20130614|6820_1 134 LETLDLSGNGL 144
                 99*******86 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0037
                 ESEEEETSSBCB.CHH CS
  PF00560.28   2 LeeLdLsgNnlt.slp 16 
                 L++L+++gN+l+ ++ 
  MMETSP0890-20130614|6820_1 160 LRHLSVRGNPLCeHVR 175
                 9***********5544 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.017        34      23      61 .]      58     100 ..      50     100 .. 0.70
   2 ?    2.7   0.0      0.05        98       2      17 ..      89     104 ..      88     114 .. 0.78
   3 !   13.3   0.0   2.3e-05     0.045      26      61 .]     133     170 ..     125     174 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.017
   PF13855.1  23 glsnLkvLdLsgnnlk.sispe.afkg..LpsLreLnLsgNrl 61 
                 + ++  ++dLsgn+lk s+s++  +++  L sL+ L++s ++l
  MMETSP0890-20130614|6820_1  58 QSDHIVEIDLSGNALKgSLSDGfGLWQyaLGSLKRLDVSRCQL 100
                 5678889999999996588886434433377777777777765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.05
   PF13855.1   2 nLkeLdLsnNrlkvip 17 
                 +Lk+Ld+s++ l++++
  MMETSP0890-20130614|6820_1  89 SLKRLDVSRCQLRSLR 104
                 6999999999999886 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 2.3e-05
   PF13855.1  26 nLkvLdLsgnnlksispea..fkgLpsLreLnLsgNrl 61 
                  L++LdLsgn l ++ +++   + Lp Lr+L+++gN+l
  MMETSP0890-20130614|6820_1 133 VLETLDLSGNGLWNLGDCIemCSRLPMLRHLSVRGNPL 170
                 57777777777777776534477777777777777765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.5   6.8e+03       7      14 ..      66      73 ..      63      77 .. 0.78
   2 !   10.0   0.1   0.00043      0.83       1      16 [.      88     103 ..      88     104 .. 0.92
   3 ?    4.6   0.1     0.026        51       3      13 ..     134     144 ..     132     150 .. 0.89
   4 ?    2.4   0.0      0.14   2.7e+02       3      14 ..     160     171 ..     158     174 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.5
   PF13504.1  7 dLsgnrLt 14
                dLsgn L+
  MMETSP0890-20130614|6820_1 66 DLSGNALK 73
                9****986 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00043
   PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                 ++Lk+Ld+s+++L sL
  MMETSP0890-20130614|6820_1  88 GSLKRLDVSRCQLRSL 103
                 58***********987 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.026
   PF13504.1   3 LkeLdLsgnrL 13 
                 L++LdLsgn+L
  MMETSP0890-20130614|6820_1 134 LETLDLSGNGL 144
                 89*******86 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.14
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L+ L+++gn+L 
  MMETSP0890-20130614|6820_1 160 LRHLSVRGNPLC 171
                 9********985 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.59   1.2e+03       4      14 ..      62      72 ..      60      80 .. 0.80
   2 ?    4.8   0.0     0.017        33       3      16 ..      89     102 ..      87     113 .. 0.70
   3 !    9.4   0.2   0.00055       1.1       4      18 ..     134     148 ..     131     155 .. 0.84
   4 ?   -1.1   0.0       1.4   2.8e+03       2      14 ..     158     170 ..     157     172 .. 0.84
   5 ?   -2.8   0.0       5.1   9.9e+03       8      16 ..     368     376 ..     368     380 .. 0.75
   6 ?   -1.9   0.0       2.5   4.9e+03      11      22 ..     482     493 ..     478     495 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.59
   PF13516.1  4 LtsLdLsnNqi 14
                + ++dLs+N +
  MMETSP0890-20130614|6820_1 62 IVEIDLSGNAL 72
                6789*****87 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.017
   PF13516.1   3 nLtsLdLsnNqigd 16 
                 +L+ Ld+s++q+ +
  MMETSP0890-20130614|6820_1  89 SLKRLDVSRCQLRS 102
                 89*********944 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00055
   PF13516.1   4 LtsLdLsnNqigdeG 18 
                 L++LdLs+N++ + G
  MMETSP0890-20130614|6820_1 134 LETLDLSGNGLWNLG 148
                 9*********98876 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 1.4
   PF13516.1   2 knLtsLdLsnNqi 14 
                 + L++L + +N++
  MMETSP0890-20130614|6820_1 158 PMLRHLSVRGNPL 170
                 669********97 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 5.1
   PF13516.1   8 dLsnNqigd 16 
                 ++s+Nqi  
  MMETSP0890-20130614|6820_1 368 HFSKNQIER 376
                 5899**976 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 2.5
   PF13516.1  11 nNqigdeGlsaL 22 
                 +N++ d G + L
  MMETSP0890-20130614|6820_1 482 SNNLEDTGTQCL 493
                 699***999887 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.2      0.87   1.7e+03      16      50 ..     222     256 ..     218     281 .. 0.68
   2 ?    0.2   0.3      0.23   4.5e+02      21      50 ..     405     432 ..     396     451 .. 0.55
   3 ?   12.9   0.2   2.6e-05     0.052      41      72 ..     561     592 ..     558     594 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.87
  PF04977.10  16 llalyqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 + + ++ +   +++ +e ++lk +n++Lea + + 
  MMETSP0890-20130614|6820_1 222 VETNRERHDMTKTKSEEENDLKIKNAALEALLLQA 256
                 55666666677788889999999999999876555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.23
  PF04977.10  21 qlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 +++ e+a++ +++++   +  +L+++ ++L
  MMETSP0890-20130614|6820_1 405 EVNLELAKQVEQVQATTTK--NLASRAAEL 432
                 4555555555555444433..344444444 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 2.6e-05
  PF04977.10  41 eeLeaevkdLksdedyieeqARselglvkpgE 72 
                 ++Le ++++L+ d+++i++ AR el+ +   +
  MMETSP0890-20130614|6820_1 561 ADLELRISRLRADRERIRRTARLELNIISARD 592
                 79************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:00.72
# Mc/sec: 2792.42
//
Query:       MMETSP0890-20130614|6822_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 962.75
//
Query:       MMETSP0890-20130614|6817_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-33  115.4   0.8    1.7e-33  114.8   0.0    1.7  1  PF01873.12 Domain found in IF2B/IF5
    1.6e-16   59.9   0.2    1.6e-16   59.9   0.2    3.4  2  PF02020.13 eIF4-gamma/eIF5/eIF2-epsilon
     0.0013   18.5  10.4     0.0013   18.5   7.2    1.9  2  PF01034.15 Syndecan domain
     0.0043   16.6   0.1     0.0098   15.5   0.0    1.6  1  PF09300.5  Tectiviridae, minor capsid
      0.005   16.6  13.4      0.005   16.6   9.3    2.1  2  PF03153.8  Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
      0.022   14.6   8.9      0.028   14.2   6.2    1.2  1  PF06217.7  GAGA binding protein-like family
      0.062   10.8  11.4      0.077   10.5   7.9    1.1  1  PF05758.7  Ycf1
      0.089   12.4   0.5        0.2   11.3   0.4    1.6  1  PF12760.2  Transposase zinc-ribbon domain
       0.26   10.6   5.1       0.37   10.1   3.6    1.2  1  PF07565.8  Band 3 cytoplasmic domain
       0.32   10.5  26.9       0.56    9.7  18.6    1.3  1  PF10278.4  Mediator of RNA pol II transcription subunit 19
       0.36   10.3  49.2      0.081   12.5  22.8    2.1  2  PF04889.7  Cwf15/Cwc15 cell cycle control protein
       0.46    8.7  28.8       0.77    8.0  20.0    1.3  1  PF10243.4  Microtubule-binding protein MIP-T3
       0.81    7.7   1.9       0.92    7.6   1.3    1.1  1  PF03547.13 Membrane transport protein
       0.83    8.4   6.3        1.4    7.7   4.4    1.4  1  PF02535.17 ZIP Zinc transporter
        1.3    7.5  20.2        1.9    6.9  14.0    1.3  1  PF12569.3  NMDA receptor-regulated protein 1
        3.4    6.3   4.7        4.4    6.0   3.3    1.1  1  PF03189.8  Protein of unknown function, DUF270
        4.8    6.1  12.2        7.9    5.4   8.4    1.3  1  PF13203.1  Putative metallopeptidase domain
        9.7    6.0  12.9    2.4e+02    1.5   8.9    2.7  1  PF09526.5  Probable metal-binding protein (DUF2387)


Domain annotation for each model (and alignments):
>> PF01873.12  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   2.2e-36   1.7e-33      15     124 ..      19     133 ..       7     134 .. 0.95

  Alignments for each domain:
  == domain 1    score: 114.8 bits;  conditional E-value: 2.2e-36
                 ..----S-----B--....--EEES-HHHHHHHH-SSHHHHHHHHHHH-------B-..--EEE----SSSHHHHHHHHHHTHHHHHT--SS-CCEEEEE---CEEEEC----EE CS
  PF01873.12  15 k.rfkipklevkieGk...kkTvisNfsdiakalnRdpeyllkyllaelgtagsldgk.drlvvkgkfeekkledvldkyikkyVlCkeCkspeTelikeerlillkCkaCgarr 124
                 + r+k+p+l+ k+eG+   +kT+i N++ +a+ l+R+p  ++k+++++lg++++  ++ +r++v+g+++++ l+++l  yi+k+VlC +Ck peT+ ++++++i  +C aCgar+
  MMETSP0890-20130614|6817_1  19 EyRYKMPRLMGKVEGRgngIKTAIPNIVLVAQSLHRSPGEVTKFFGCDLGAQTTWTEEtERAIVNGAHTTQTLQEKLSIYIEKFVLCPSCKLPETSYKIKNEIIYHQCVACGARE 133
                 35****************************************************99998*****************************************************986 PP

>> PF02020.13  eIF4-gamma/eIF5/eIF2-epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.6   3.5e+03       8      36 ..     271     297 ..     265     298 .. 0.64
   2 !   59.9   0.2     2e-19   1.6e-16       7      84 .]     325     410 ..     322     410 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 4.6
  PF02020.13   8 lgalerlckeneellkllakilklLYdaD 36 
                 + a++++c+  ++  + ++ +l +LY +D
  MMETSP0890-20130614|6817_1 271 VRAVQTFCALPRN--ERAFLLLAALYYED 297
                 5688889865333..45666666777665 PP

  == domain 2    score: 59.9 bits;  conditional E-value: 2e-19
  PF02020.13   7 llgalerlc.keneellkllakilklLYdaDiieEeailkWaek..skkyv.akegskk....vrkqakpfveWLeeaeeEseeee 84 
                 l+ +le+   ++n+ l ++++ +lk LYdaD++eE+++l+W+++  +++   +++ s      ++k++ pf++WLeea+eE+++++
  MMETSP0890-20130614|6817_1 325 LICGLEKIAtVTNSLLAPKFPILLKFLYDADVLEEQQLLQWYKAepNRDIDlPEAVSDSdhsaLLKATLPFIKWLEEADEEDDDDD 410
                 67788888867899999**************************985444333333333345669******************9997 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   7.2   1.7e-06    0.0013     138     233 ..     148     255 ..      68     291 .. 0.63
   2 ?   -1.3   0.8       1.9   1.4e+03     157     168 ..     404     415 ..     374     419 .] 0.56

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.7e-06
  PF01034.15 138 aepeqpttpatdedldtevetseddstptdedeeddeedpeddnkpetteketee.lsttlpevvesgevelattneadnevpasdgssddtedde.............n 233
                 +++ +++++a ++d++t++e+++  ++++++++++ e   ++++k+e ++k++e+ + ++ +e  + g+ +++++n++  e+++ d++ dd+e+++              
  MMETSP0890-20130614|6817_1 148 NHKLEKKKNAKNKDKKTKSESNDTAEKKKKKKKDKSE--MTEEEKAERKRKKKEKaELKKQQEADAGGNSTHNGSNHDSDEIEDDDDDDDDEEIQDdasamdaavsglhS 255
                 3333444444444444444444433333333333333..44455555555555444555555555555558899999999999999999999999955444333333330 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.9
  PF01034.15 157 etseddstptde 168
                 e+++dd+++ d+
  MMETSP0890-20130614|6817_1 404 EEDDDDDDDDDD 415
                 111111111111 PP

>> PF09300.5  Tectiviridae, minor capsid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05    0.0098       6      62 ..       5      62 ..       1      84 [. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
   PF09300.5  6 pqfpyagpvpipgpaptetmpllnyrvegriagiqqar.qfmpflqgphravaeqtyy 62
                p +  ag  pi  p     mp l  +vegr  gi+ a  +++   q  hr+  e t +
  MMETSP0890-20130614|6817_1  5 PLMNIAGTTPIEDPEYRYKMPRLMGKVEGRGNGIKTAIpNIVLVAQSLHRSPGEVTKF 62
                77889******************************99724556679999999888754 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   9.3   6.6e-06     0.005     198     306 ..     149     248 ..      67     251 .. 0.59
   2 ?   -2.6   8.0       4.7   3.5e+03     284     302 ..     391     417 ..     358     419 .] 0.48

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.6e-06
                 XXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------- CS
   PF03153.8 198 asvarrreaaasqeaeldellksqleqrikeleagklskalkqkkkqkksekkskieiQvDGagddssdeseedeeadedeeekdkvieeDlddseDDvseedeedldd 306
                 +++ ++++a++++++ ++e  ++  ++++k++++ ++++  k + k+kk+ek + +  Q    ++ +s+  ++  + d+de      ie+D+dd++D+++++d + +d+
  MMETSP0890-20130614|6817_1 149 HKLEKKKNAKNKDKKTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKKEKAELK-KQQEADAGGNST--HNGSNHDSDE------IEDDDDDDDDEEIQDDASAMDA 248
                 22222333333322222222223333333444444344333333333333333333.444333333332..2367799999......*******999998988888875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 4.7
                 X...........------------------ CS
   PF03153.8 284 v...........ieeDlddseDDvseedee 302
                 +            eeD+dd++DD   +d++
  MMETSP0890-20130614|6817_1 391 AtlpfikwleeaDEEDDDDDDDD---DDDD 417
                 14444444444222222222222...1222 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   6.2   3.7e-05     0.028      69     193 ..      73     202 ..      21     249 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.7e-05
   PF06217.7  69 alaernkalverdnkllalllvens.......pvgvqvlsetksihslqmlkhpqledsave.lreeeklealpieeaaeeakekkkkkkrqrak...kpkekkakkkkkksekskkkvkkesaderskaekksid 193
                 + +e ++a+v+  +   +l+ +           ++++  + + +i+  + + h+ ++  a e +  ++kl+++ +++++ e+k+++k+k +++++   ++ ekk+kkkk+kse +++++++     r++++k++ +
  MMETSP0890-20130614|6817_1  73 WTEETERAIVNGAHTTQTLQEKLSIyiekfvlCPSCKLPETSYKIK-NEIIYHQCVACGAREpVDMQHKLTTFILKNHKLEKKKNAKNKDKKTKSesnDTAEKKKKKKKDKSEMTEEEKAE-----RKRKKKEKAE 202
                 5555555555555544444443333555555433333333333333.33333333333333313333333333333333222222222222222200022222222222222222222222.....2222222222 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   7.9    0.0001     0.077     203     290 ..     119     227 ..      92     278 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0001
   PF05758.7 203 sillfitcllylgriPspiltkkl...kelseieerseeekkkeieaesekkrakqeqeeeeeedsslaseekedkdkideqe.ekkveek..................k 290
                 + +++  c+++ +r P+ + +k +    ++++ e++ ++ k+k+++++se+++++++++++++++s++++eek ++++ ++++ e k++++                   
  MMETSP0890-20130614|6817_1 119 NEIIYHQCVACGAREPVDMQHKLTtfiLKNHKLEKK-KNAKNKDKKTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKKEKaELKKQQEadaggnsthngsnhdsdeI 227
                 567888888888999988766665444333555555.3333333334444444444444333333444433333333312111011111112333334444444332220 PP

>> PF12760.2  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00026       0.2      18      45 ..     101     131 ..      96     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00026
   PF12760.2  18 gfv.CphCgsr.eayrikt.rglyqCkeCrk 45 
                 +fv Cp C+   + y+ik+   ++qC +C++
  MMETSP0890-20130614|6817_1 101 KFVlCPSCKLPeTSYKIKNeIIYHQCVACGA 131
                 6777*****999*******88899*****86 PP

>> PF07565.8  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.6   0.00048      0.37      63     133 ..     136     213 ..     103     281 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00048
   PF07565.8  63 edrekvlraLLlkhrhqse.keksvllptkrsladlgkllsekkkaeqselslqkslelekakeseslekv......e 133
                 ++++k+ + +L+ h+ +++ ++k+  + tk + +d+ +++++kkk+++++++++k+   +k+ke+++l+k+       
  MMETSP0890-20130614|6817_1 136 DMQHKLTTFILKNHKLEKKkNAKNKDKKTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKKEKAELKKQqeadagG 213
                 345566777777776555522233333444444444433333333333333333333333333333333333444440 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  18.6   0.00073      0.56      96     173 ..     134     211 ..     130     216 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00073
   PF10278.4  96 PlpeqyrllkkqePkkkskekhkkskvkdalseetlsdseteegfekkkkkkk.k.....edDkerkkkkkekkkkkkrksped 173
                 P++ q++l++      k ++k++k+k+ ++++++t s+s  +++ ekkkkkkk k     e+  erk+kkkek + kk+++++ 
  MMETSP0890-20130614|6817_1 134 PVDMQHKLTTFI---LK-NHKLEKKKNAKNKDKKTKSES--NDTAEKKKKKKKdKsemteEEKAERKRKKKEKAELKKQQEADA 211
                 666666666665...22.344444444445555555555..5555665555554322222566799*******99999998875 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  22.8   0.00011     0.081      58     151 ..     145     239 ..     131     243 .. 0.45
   2 ?    3.8   5.8     0.047        36     131     148 ..     392     418 ..     355     419 .] 0.56

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
   PF04889.7  58 dlrae.LleaEaaakakkekskkkralenakkeeeleaakeaeededeekeakrkkkleeareidadd..sdkseeesdesdddsdddddeDetaeL 151
                  l+++ L+++++a+++ k k+k++++ + +kk+++ ++++e +e+e+ e+++k+k+k e +++++ad   +++++ ++++sd+  +dddd+D+++e+
  MMETSP0890-20130614|6817_1 145 ILKNHkLEKKKNAKNKDK-KTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKKEKAELKKQQEADAggNSTHNGSNHDSDEI-EDDDDDDDDEEI 239
                 566541555555444444.33333333333333333444455555555555555555555555555550033333222222222.245666666655 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.047
   PF04889.7 131 e.........sdesdddsdddddeDet 148
                 +          de+ddd+ddddd+D++
  MMETSP0890-20130614|6817_1 392 TlpfikwleeADEEDDDDDDDDDDDDD 418
                 166666665544444444444444443 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  20.0     0.001      0.77     144     230 ..     151     240 ..     137     273 .. 0.37

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
   PF10243.4 144 rkpkekekekeKkkeeekdrekekererkkaserekkekkk..dsknkkkdk.ekekkkeksrksekgkeeerskdeerekeedkgkdre 230
                  ++k+++k+k Kk+++e++++ ek++++kk++++  +e+k   ++k+k+k   +k++++++ ++s  ++ ++ s++ e ++++d+ ++ +
  MMETSP0890-20130614|6817_1 151 LEKKKNAKNKDKKTKSESNDTAEKKKKKKKDKSEMTEEEKAerKRKKKEKAElKKQQEADAGGNSTHNGSNHDSDEIEDDDDDDDDEEIQ 240
                 233333333333333333333333333333333322222210011111111122222222222222222222222222222222222222 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.3    0.0012      0.92     150     225 ..     160     228 ..     137     342 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0012
  PF03547.13 150 aklliseefpetaasivsikvdsdvvsldgsealeteeeikedgklhvtvrksnasrsdivs......stprpsnltnaeiy 225
                 ++ ++++e+++ta++++++k+d++++       +e+ +e k+++k+  + +k +       +      st++ sn  ++ei+
  MMETSP0890-20130614|6817_1 160 KDKKTKSESNDTAEKKKKKKKDKSEM------TEEEKAERKRKKKEKAELKKQQ-------EadaggnSTHNGSNHDSDEIE 228
                 11111111113333333333333333......3333335555555555555544.......233445568888888888775 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.4    0.0018       1.4     110     172 ..     154     242 ..      81     257 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0018
  PF02535.17 110 hgegrghdkehsettsdeaskskes..........................kvenaeseeeeteeeesdhdheskeksesdkeselaaa 172
                  ++++++dk+++  + d+a+k+k++                          k++ a+   + t++++ +++ e++  +++d+++e++ +
  MMETSP0890-20130614|6817_1 154 KKNAKNKDKKTKSESNDTAEKKKKKkkdksemteeekaerkrkkkekaelkKQQEADAGGNSTHNGSNHDSDEIEDDDDDDDDEEIQDD 242
                 22333333333333333333333332333355555555555556667777666666667777777777777777777777777766554 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  14.0    0.0025       1.9     392     451 ..     153     212 ..     116     262 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0025
   PF12569.3 392 kpkakeeeeeeaanaelsaaerkklrkkakkaekkaekeeaekaekeee..kkaaekkakke 451
                 k+k+++++++++++++ + ae+kk +kk k +  ++ek+e ++++ke++  k  ++++a++ 
  MMETSP0890-20130614|6817_1 153 KKKNAKNKDKKTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKKEKAelK--KQQEADAG 212
                 2334444555566667777788887777777644444444443333333121..11111111 PP

>> PF03189.8  Protein of unknown function, DUF270
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.3    0.0058       4.4      91     155 ..     146     212 ..     137     302 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0058
   PF03189.8  91 veeakkeitkieqk..kepeeeesallessrqstleaaktvekteqeklekevvkntvknlvkasst 155
                 ++++k e +k++++  k++++e++ ++e+++++++++++++e+ + e+++k++ k  +k++++a + 
  MMETSP0890-20130614|6817_1 146 LKNHKLEKKKNAKNkdKKTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKKEKAELKKQQEADAG 212
                 4444444444433300333333333344444444444444444444444444445555555554333 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.4      0.01       7.9     142     239 ..     155     256 ..     110     266 .. 0.46

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.01
   PF13203.1 142 k.......kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadl....aespegksapeaeaeearewrerlaraleagraaGklpgaLarl 239
                 k       k +s++++ +++++ +++++se + e++++++rk++     + +l+k+++ad+      +++  +++e e ++     +   +++  ++a + +++ L + 
  MMETSP0890-20130614|6817_1 155 KnaknkdkKTKSESNDTAEKKKKKKKDKSEMTEEEKAERKRKKK----EKAELKKQQEADAggnsTHNGSNHDSDEIEDDDD---DDDDEEIQDDASAMDAAVSGLHSK 256
                 12222211222222222222222222222222222222222222....2233333333333110022233333333333333...333344444777777777777655 PP

>> PF09526.5  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   8.9      0.32   2.4e+02      10      59 ..     104     156 ..     103     212 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.32
   PF09526.5  10 vCPkCsemDkirlveedevevveCveCgyteerkde....eevelktrvnkeaa 59 
                  CP+C+   +     ++e  + +Cv+Cg +e  + +    + + ++++++k+++
  MMETSP0890-20130614|6817_1 104 LCPSCKLPET-SYKIKNEIIYHQCVACGAREPVDMQhkltTFILKNHKLEKKKN 156
                 6****98876.666788999**********988777445422222233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2598  (0.190023); expected 273.4 (0.02)
Passed bias filter:                      783  (0.0572703); expected 273.4 (0.02)
Passed Vit filter:                       262  (0.0191633); expected 13.7 (0.001)
Passed Fwd filter:                        74  (0.00541252); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.70u 0.42s 00:00:02.12 Elapsed: 00:00:00.98
# Mc/sec: 1024.56
//
Query:       MMETSP0890-20130614|6825_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-35  120.1   0.0    5.7e-11   41.6   0.0    5.1  5  PF13475.1  Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.24   11.2   0.0    1.3  1  PF01091.13 PTN/MK heparin-binding protein family, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.9e-10   1.3e-06       6      45 ..      82     123 ..      79     125 .. 0.79
   2 !   26.6   0.0   3.9e-10   2.7e-06       1      36 [.     103     139 ..     103     141 .. 0.98
   3 !   12.9   0.0   7.7e-06     0.052       1      41 [.     129     168 ..     129     172 .. 0.91
   4 !   32.0   0.0   8.3e-12   5.7e-08       6      41 ..     202     237 ..     201     237 .. 0.95
   5 !   41.6   0.0   8.4e-15   5.7e-11       1      31 [.     222     252 ..     222     253 .. 0.97

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.9e-10
   PF13475.1   6 leavkkng.salkylseeLknDkeivlkAvkqng.salsyas 45 
                 l+a  +n+ +al y+++e+ +D+e+vl++v +n  ++++++ 
  MMETSP0890-20130614|6825_1  82 LAAACINPyFALTYAPPEILRDREFVLEIVSRNRgEIIRFLG 123
                 5555555517*********************99878888875 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 3.9e-10
   PF13475.1   1 DrEivleavkkn.gsalkylseeLknDkeivlkAvkq 36 
                 DrE+vle+v++n g+++++l  e +nD+++ l Avk+
  MMETSP0890-20130614|6825_1 103 DREFVLEIVSRNrGEIIRFLGTEARNDRQVWLTAVKS 139
                 9***********9***********************7 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 7.7e-06
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsal 41 
                 Dr++ l avk+ g  + ++s+e+k+D+ i+l+ + ++ +++
  MMETSP0890-20130614|6825_1 129 DRQVWLTAVKS-GLRFCHISDEWKKDRGILLAYISKYYKCI 168
                 8999999***9.999*****************999998775 PP

  == domain 4    score: 32.0 bits;  conditional E-value: 8.3e-12
   PF13475.1   6 leavkkngsalkylseeLknDkeivlkAvkqngsal 41 
                 l +vk++g+ l+++s+e+k+D+ +vl+Av q gsal
  MMETSP0890-20130614|6825_1 202 LDLVKRHGYLLHFASDEIKSDRKVVLAAVTQFGSAL 237
                 678******************************987 PP

  == domain 5    score: 41.6 bits;  conditional E-value: 8.4e-15
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivl 31 
                 Dr +vl+av+++gsal+y+seeLknD+eivl
  MMETSP0890-20130614|6825_1 222 DRKVVLAAVTQFGSALEYASEELKNDREIVL 252
                 9*****************************9 PP

>> PF01091.13  PTN/MK heparin-binding protein family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.6e-05      0.24      13      40 ..      30      55 ..      26      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.6e-05
  PF01091.13 13 eCdaktgtktRtgtLkkalynaeCqetv 40
                 C  +  +++R g+Lkka  n  C+ t 
  MMETSP0890-20130614|6825_1 30 SCHHAPEIRARYGILKKA--NFVCEATE 55
                5999999***********..99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.70
# Mc/sec: 869.54
//
Query:       MMETSP0890-20130614|6823_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-51  175.2   0.0    2.1e-51  174.4   0.0    1.4  1  PF00176.18 SNF2 family N-terminal domain
    1.1e-09   37.8   0.2      5e-09   35.7   0.0    2.3  2  PF00271.26 Helicase conserved C-terminal domain
    1.4e-07   31.4   0.6    0.00041   20.1   0.0    4.0  3  PF04851.10 Type III restriction enzyme, res subunit
    0.00053   19.3   0.1       0.41    9.9   0.0    2.6  2  PF05707.7  Zonular occludens toxin (Zot)
     0.0011   18.3   0.9      0.036   13.4   0.1    3.1  2  PF00270.24 DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.037   14.0   0.6       0.29   11.1   0.1    2.8  2  PF13401.1  AAA domain
       0.05   13.4   0.1       0.15   11.8   0.0    1.8  1  PF13623.1  SurA N-terminal domain
       0.06   12.9   3.0        0.7    9.5   0.4    2.6  2  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   1.2e-54   2.1e-51       1     259 [.      93     410 ..      93     467 .. 0.86

  Alignments for each domain:
  == domain 1    score: 174.4 bits;  conditional E-value: 1.2e-54
                 TTT---HHHHHHHT---.....---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHH.......STT--EEE-----HHHHHHHHHHS--------SEEEE-TTHHH...........HTT...TT----E.............EEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH-------------...................................-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---HHHHHHHHHHHHH- CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18   1 yQkegvawllrreakkl..svrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekh.......agalrvvvyhgqtrerskvaesmvsakqlatadvvittYdvlk...........kekkeesllkkve.............wkrvvlDEahrlknsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelrvfekaferp..............................aeekskeglrrllkllkplllrrtkkdvekglppksehllevrlskeqkelYnklltka 259
                 +Q egv++l++r  ++   ++rg+iLad mGLGKTlq+ia i ++ +     ++ +Lv++P+ +l +W+ ei k+       a++l+v  ++   ++r    +  +++++ ++   +++ Y++ +           + k++++++k++e               +++lDEahrlk++ s++++al+ ++tk+r++ +G Piqn+l e++aL +F rp++l+++++f++ fer                               + ++  +++ +l+  l+ ++lrr  +++  +lpp++  l++++l ++q+elY+ +   +
  MMETSP0890-20130614|6823_1  93 HQMEGVRFLWQRVIEPRseDARGCILADHMGLGKTLQLIATISTYFQT--FAKGTVLVIAPAFVLGNWQAEILKWtgentqlANELNVRTLGTGPNTRA--GRLAIIDAWRKDGGTLLVGYEMFRhlvlrgsstsvSTKTKKKKRKQTEidqdvricntlisPGLLILDEAHRLKDPRSQVYKALSRITTKRRILASGYPIQNRLDEYWALCDFARPGVLGNYDSFRSFFERTiesyvqaqsnfqdtqilgtnatalineintEGKEALQRAYALQYALNDVVLRRGIEQLGTDLPPRTDWLVHCKLGQIQQELYQAFCAFN 410
                 9***********966665679**********************99998..55667********************666555555566666666555553..3333389***********************9999944444555555445567778889987888********************************************************************************************999754444444455578889999***********************************665433 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.5   4.2e+03      16      33 ..     486     503 ..     476     511 .. 0.81
   2 !   35.7   0.0   2.9e-12     5e-09       3      78 .]     608     711 ..     606     711 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.5
                 TS-HHHHHHHHHHHHTTT CS
  PF00271.26  16 elpqnereeileqfnagk 33 
                 e + ++r +il++ +a++
  MMETSP0890-20130614|6823_1 486 ERTEKKRAKILQKLKAKN 503
                 678899999999998875 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 2.9e-12
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTS............................SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagks............................kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 l+   i+va+++g +   +r+  +   n+++                               l + +++++Gi+l +++ Vi fd+ +++    Q++ R++R+g
  MMETSP0890-20130614|6823_1 608 LKSHPIRVARVDGATALTKRTNLIAALNNDEHktkpkytpskkkakrtttklsnnngecdVLLMSIKAGGEGINLIGASRVILFDVCWNPCFDQQALSRAHRFG 711
                 67778************************9999**************************9999999************************************87 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.4e-07   0.00041       3     164 ..      89     279 ..      87     344 .. 0.73
   2 ?   -0.7   0.0      0.57   9.8e+02      98     134 ..     321     358 ..     289     372 .. 0.75
   3 !    5.8   0.0    0.0056       9.6      35      71 ..     570     625 ..     517     675 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.4e-07
  PF04851.10   3 klrpyQeeaienllesieke.dekkrgli.vmaTGtGKTlvaasliarlar.....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.eskseslealldefd.............viiiDEaHrlsakkk...........y 164
                 kl+p+Q+e ++ l + + +  +e +rg+i +   G GKTl +++ i+ +++      +l+++p   l   ++ e+ k + ++++++ + +    +  +  ++ +          kd   +l+ + ++   + ++++ + + k ++++ +++e d             ++i DEaHrl ++ +           +
  MMETSP0890-20130614|6823_1  89 KLKPHQMEGVRFLWQRVIEPrSEDARGCIlADHMGLGKTLQLIATISTYFQtfakgTVLVIAPAFVL-GNWQAEILKWTGENTQLANELN--VRTLGTGPNTRAGRLAIIDAWRKDGGTLLVGYEMFRHLVLRGSSTSvSTKTKKKKRKQTEIDqdvricntlispgLLILDEAHRLKDPRSqvykalsrittK 279
                 6899999999998887777786667777615579*********************888888887655.5677777555555555533332..3333333444444444445567889999999999999999999999777766666666666699999********************998884444443332 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.57
  PF04851.10  98 qkkskdkeekkkkdkeiilttiqklhkaleeeeend.e 134
                 + +s  + +++ +d++i+ t+++ l +++++e +++ +
  MMETSP0890-20130614|6823_1 321 TIESYVQAQSNFQDTQILGTNATALINEINTEGKEAlQ 358
                 44444555666788899999999999988887776644 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0056
  PF04851.10  35 GtGKTlvaasliarlar...kflflv...prkelleqaleef.............k 71 
                 G+GK +va+++i++  r   +++++     + ++le++l+               +
  MMETSP0890-20130614|6823_1 570 GSGKAIVAIEIILAATRrkeRVVLFTqtlGTLDVLERLLKSHpirvarvdgatalT 625
                 9*********9999999999999998444467888888877766666666653331 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0024       4.1      58     100 ..     227     270 ..     195     346 .. 0.82
   2 !    9.9   0.0   0.00024      0.41       6      49 ..     566     609 ..     562     653 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0024
   PF05707.7  58 dis..npegeelekyldkwrtldkgallviDEcqqifpvragegk 100
                 +++  ++++ e++++++   tl   +ll++DE++++  +r++   
  MMETSP0890-20130614|6823_1 227 KTKkkKRKQTEIDQDVRICNTLISPGLLILDEAHRLKDPRSQ-VY 270
                 2333478888888888888887799**********9888888.34 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00024
   PF05707.7   6 tGkpGsGKtleaVskdilpalk.eGrkvit..nidgLkleriekvlg 49 
                 tG+ GsGK  +a++  il+a + + r v +   +    l+++e++l+
  MMETSP0890-20130614|6823_1 566 TGQHGSGKAIVAIEI-ILAATRrKERVVLFtqTLGT--LDVLERLLK 609
                 9**************.55555537887765244554..444444333 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   2.1e-05     0.036      15     152 ..     114     278 ..     100     291 .. 0.52
   2 ?   -1.2   0.0      0.61     1e+03      22      52 ..     568     592 ..     556     669 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.1e-05
                 -EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT....SS...............EEEEETTSSBHHHHHHHHH....T..-SEEEEEHHH..........HHHHHHHCCHHT.......................TT.EEEEEECTHHHHHCTTTHHHHHHHHHHSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx..............xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx..........xxxxxxxxxxxx.......................xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  15 gdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky....pkl..............rvlliiggvalardqlsvl....dngvdivvgTpgr..........lddlvstgklnl.......................sq.vrllVlDEadrllsqgfsdqlnqilqilc 152
                 + +++a + G GKTl  +  +    ++t     +  +l++aP   L + +++ lk  +++     +l              r              l  +    ++g  ++vg                         +                       +   +ll+lDEa+rl +  +s+ ++ + +i+ 
  MMETSP0890-20130614|6823_1 114 RGCILADHMGLGKTLQLIATIST-YFQTF---AKGTVLVIAPAFVLGNWQAEILKWTGENtqlaNELnvrtlgtgpntragR--------------LAIIdawrKDGGTLLVGYEMFrhlvlrgsstS----------VstktkkkkrkqteidqdvricntLIsPGLLILDEAHRLKD-PRSQVYKALSRITT 278
                 56778888899999876654443.33432...34589999999999999999998888885554344333333333333331..............22224443222333333222222222221110..........111222222222333333333333444899***********.66666666666652 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.61
                 -TT---HHHHHHHHHHHHHH..HTTSTSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24  22 eTGsGKTlaflipvlqilletlkkttikkal 52 
                 + GsGK ++++  +l +  ++      ++++
  MMETSP0890-20130614|6823_1 568 QHGSGKAIVAIEIILAATRRK------ERVV 592
                 568888777765555544322......1222 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00017      0.29      70     110 ..     229     276 ..     111     290 .. 0.78
   2 ?   -0.9   0.0      0.84   1.4e+03      10      37 ..     566     588 ..     562     660 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
   PF13401.1  70 ltteellealqealrrrrt....rlliiDEaqrL...seealeelrsl 110
                 +++++  + + + +r + t    +lli+DEa+rL   + ++++ l+++
  MMETSP0890-20130614|6823_1 229 KKKKRKQTEIDQDVRICNTlispGLLILDEAHRLkdpRSQVYKALSRI 276
                 444444466666666666688899**********65437777766555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.84
   PF13401.1  10 tGesGvGKTtllrrlarqldeeaeaaek 37 
                 tG+ G+GK  ++ ++   + ++     k
  MMETSP0890-20130614|6823_1 566 TGQHGSGKAIVAIEIILAATRR-----K 588
                 7889999988887777766554.....3 PP

>> PF13623.1  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.1e-05      0.15      74     104 ..       8      38 ..       5      42 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.1e-05
   PF13623.1  74 eeeelnqvkdavwqqlvnnklieadAkklgl 104
                 e+ee ++++ avw qlv++k+++++   l  
  MMETSP0890-20130614|6823_1   8 EDEETQRQQAAVWAQLVSEKVVKKETTTLAC 38 
                 5677789999***************987765 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.062   1.1e+02      20      50 ..     123     151 ..     115     153 .. 0.84
   2 ?    9.5   0.4   0.00041       0.7      16      63 ..     566     615 ..     565     627 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.062
   PF13245.1  20 GtGKTttlaaiiaallaarekpgrsvllvap 50 
                 G GKT  l+a i+ ++++ +  +  vl++ap
  MMETSP0890-20130614|6823_1 123 GLGKTLQLIATISTYFQTFA--KGTVLVIAP 151
                 77**************6533..446999998 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00041
   PF13245.1  16 tGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserl......l 63 
                 tG  G+GK+ +++ ii a+ ++    +++v+l ++t   ++ l + l      +
  MMETSP0890-20130614|6823_1 566 TGQHGSGKAIVAIEIILAATRR----KERVVLFTQTLGTLDVLERLLkshpirV 615
                 6888****************88....99********999999955556665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1070  (0.0782621); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:01.09
# Mc/sec: 1875.31
//
Query:       MMETSP0890-20130614|6824_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-11   42.2   0.0    4.8e-10   39.7   0.0    2.2  1  PF00856.23 SET domain
    4.3e-10   39.4   0.0    9.8e-10   38.3   0.0    1.6  1  PF09273.6  Rubisco LSMT substrate-binding


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   7.1e-14   4.8e-10       2     164 .]      44     245 ..      43     245 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 7.1e-14
                 ---EESS-B----EEE.EECCCEEECCCCHH......................................................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCC..EECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   2 rGvfAtedipkGefvc.eyvgelltddeaek.......................................................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeees..eyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                 rGv A++ i++ e+++ ++   l+t ++ ++                                                       + d+ ++lq+  +l+++e+++                  a +++  ++ +   + ++      +++a+    ++ +    + i   +l+p+a++lNH  +  + ++f+  + + +++++A++ I+kG++++ +Yg
  MMETSP0890-20130614|6824_1  44 RGVHAARRIEPEEIIMeIPLDCLITVEMGKEtevgravmeadleldapkhvflmlflltdrknkdsrfqpyyamlpatlsnmpvfwRADELEKLQGSFLLTQIEERNL-----------------AIAKDYESICKIYSDFENIATLDEFRWARMCVCSRNFGivIDGIRTSALVPYADMLNHLRPRETKWTFD--NARSAFTITALQYIEKGDQIYDSYG 245
                 8************999**********************************************************************889999****************.................666666666666666666666666666666666665551156678889************878888888..59**********************8 PP

>> PF09273.6  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.4e-13   9.8e-10       2     113 ..     281     400 ..     280     417 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.4e-13
                 -TTSTTHHHHHHHHHH----SE.EEEEEETTS-...-----HHHHHHHH----GGGGGSGGGTTT--....--TTT---HHHHHHHHHHHHHHHHHHH----S-HHHHHHH.H-----HH CS
   PF09273.6   2 sendpladdKaqllerlglset.etftlrlngp...iskeLLaylRllllkeeelkelkslaesavi....stkeaplskenEekvlqvladlcaeaLseypttleeDeallkkadleeq 113
                  ++dpl+++K+ l+ r g ++  +  ++r+        +  L+ lR+ + ++++l+ l ++++        s + +pls +nE +vl++l +++ ++L++ypt le+D + lk++ l+  
  MMETSP0890-20130614|6824_1 281 RQDDPLTPRKQLLWIRDGSPSGsGPKRIRICASdndNFRAVLSLLRVCVADDDDLERLFGQQNPYGAfrtaSDIHFPLSFRNELRVLRLLGQSITNMLNKYPTSLEQDLQDLKGNTLPPF 400
                 6788998888888888887776644444443334489999***********999999999998888799********************************************9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.79
# Mc/sec: 1677.45
//
Query:       MMETSP0890-20130614|6828_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-08   32.0   1.9    9.5e-08   30.9   1.3    1.5  1  PF00474.12 Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> PF00474.12  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   1.3   6.9e-12   9.5e-08     123     385 ..     102     382 ..      20     385 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 6.9e-12
  PF00474.12 123 avlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdl......lt.pdslkllrdpltalslwlglvlGvagl....philvRflaak...dakailkgvlkltivlilv.ligmisiilfa..iklagavpkavgtevgvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkir..r..kasakekelvgvsriivlvvislaillavqeeqkg.vlklvelafaglasavlavi 385
                 + +l+ +l   Y+++GG++++   d  q+v+ ++ ++    +vl+++    +  + lk+ a++++d       ++  + +  l     ++++ lg + G+       p+   R++ a+    a+a  +g + + ++++l+ lig+  + l+   ++ ++    + g++++     +p  v   l+ ++  ++  +m+ + +stl+s + s + +   Dl   i   +  + ++   + v+++ri+++ ++ +  l++++++ +    ++  ++++gla ++  + 
  MMETSP0890-20130614|6828_1 102 SAILVTLLPLSYVFLGGMRSSLISDAAQTVVAVIFLV----VVLVAIEIDRNKQNDLKNWATEGSDKawnmfeYEpMQDVSGLSLKGGMDLFALGAIQGTLSYpffdPVLTDRCFLAEpktMARAFTAGGFFAAWFIMLFgLIGVHGRMLGDcvNDGVCSESILNGASLTDVRSGAPAAVARTLGVGIYSVVAIIMITTGISTLDSTFTSVAKLAGPDLHGYIEtgKplRLADATSKHVWIGRIAMITIAIVGTLPLLDNPAELdATTVAGTIVSGLAGPIWTMA 382
                 44556666778*******************9665444....444444444444445555444443333333443344445566777788999999999999889999********999777667777666666555554437888888887611455666667788999999999********************************************76664112222346778899********99999999998776654378888888888888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:01.17
# Mc/sec: 1077.34
//
Query:       MMETSP0890-20130614|6830_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-10   38.1  12.5    2.2e-09   36.9   8.6    1.6  1  PF00172.13 Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.073   11.1  94.2       0.11   10.5  65.3    1.2  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF00172.13  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   8.6   3.2e-13   2.2e-09       3      39 ..      65      99 ..      63     100 .. 0.92

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 3.2e-13
                XHHHHHHTXXXXXXXX.XHHHHCTTXXXXXXXX--EE CS
  PF00172.13  3 CdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                C +Cr +Kv+Cd+++P Cs+Ck+++++C+  + + kr
  MMETSP0890-20130614|6830_1 65 CSQCRLSKVRCDKQFP-CSRCKRRGVDCV-AQVRIKR 99
                ****************.************.8777766 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  65.3   1.6e-05      0.11     110     349 ..      98     343 ..      76     367 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.6e-05
   PF09770.4 110 ekstdpesipdlqldeslwgtakkpe....qqpaqapesqpqaaakakkllsleeveaqlqqrqqaqqlpqppaqvlpqqspprqaalp..qqakpelpsqypqppqqlqqevq.qqlqqapsqapaqapl.paqlpqqlqnlqqqqlpqlsqqmpp.qpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqeanqfreqlvqleqqerealseeeakrakrr 349
                 + ++ + s+++ q ++s w  +++ +     +       ++  +a ++++ + +++++q qq+q +qq++q+++q+++qq++++q++++  +qa  +++ ++++ p  +q +++ q +  +p+ a++ +++ +a l   +q+ qqqq+ q++q +p  ++ ++ q qqqq++++  a+ + +qq++++ q+aq q++++  + q+qq+ l+ q+ +q+ a+q +++++q +q+++ + ++ ++++++  
  MMETSP0890-20130614|6830_1  98 KRKQRRISSNSSQRKSSCWARSRQRAnnlqASGYTIAGGRALIPADHMPIYQQQQLQQQ-QQQQLQQQQQQQQQQQQQQQKQQQQQQYRiqAQASTQQTMGVGG-PMFQQTQLHpQGMTAHPAFAQQIYQQrQAALAHWFQKEQQQQQLQQPQTAPTlPQSTALQYQQQQQQQHLLAAASYQQQQQQQHQPAQVQFQQQI-QYQQQQQLLEHQKLQQRLAQQLQQRQMQRQQHRQLQEHQAKKRKLEEA 343
                 45555567788899999998777777666544445555566777788888888888887.45555555555555555555555555444112333333333332.33335555557777777777666666555555555555544433333222220222222211111111112222222222222222222222222.222222233333333333344444444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      4576  (0.334699); expected 273.4 (0.02)
Passed bias filter:                      622  (0.0454944); expected 273.4 (0.02)
Passed Vit filter:                       298  (0.0217964); expected 13.7 (0.001)
Passed Fwd filter:                        82  (0.00599766); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.97u 0.42s 00:00:03.39 Elapsed: 00:00:02.06
# Mc/sec: 558.37
//
Query:       MMETSP0890-20130614|6833_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-06   25.7   1.2      0.029   14.0   0.1    3.2  3  PF13456.1 Reverse transcriptase-like
  ------ inclusion threshold ------
       0.02   13.8   0.0      0.034   13.0   0.0    1.3  1  PF03306.8 Alpha-acetolactate decarboxylase


Domain annotation for each model (and alignments):
>> PF13456.1  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.45   3.1e+03       4      20 ..     124     140 ..     121     146 .. 0.77
   2 !   14.0   0.1   4.2e-06     0.029      23      83 ..     156     224 ..     150     229 .. 0.76
   3 !    8.7   0.0   0.00019       1.3       5      52 ..     289     339 ..     286     348 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.45
   PF13456.1   4 eaeleallaGLqlAlel 20 
                 +a   +l+ GL+l ++ 
  MMETSP0890-20130614|6833_1 124 QADFAGLISGLRLVASG 140
                 5788999****998765 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.2e-06
   PF13456.1  23 rrlivesDsqlvvqqvqge......deekselaallaeirsllkk..fesvsvshvpReqNrvAdaLAk 83 
                 + l+ve+Ds  v   ++++      + + s+ a++ +  r l ++  f+sv  +++p  qN+ A +LAk
  MMETSP0890-20130614|6833_1 156 STLVVETDSDVVLARLRSSekknncTAKLSQRAQVAELFRRLKDSgdFDSVGTRYIPNWQNQKAETLAK 224
                 6799************9994443322222244455555666777788*********************8 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00019
   PF13456.1   5 aeleallaGLqlAlelgirrlivesDsq..lvvqqvqgedeeks.elaall 52 
                 a ++all GL+lA+e g + ++     +  +  qq+++e+ + + ++ ++ 
  MMETSP0890-20130614|6833_1 289 APCQALLIGLELAVEAGAHSVVALAPRTtaTALQQLYNENIQLHtQIEQYA 339
                 5679***************99987655411455777777776666766665 PP

>> PF03306.8  Alpha-acetolactate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.9e-06     0.034      81     150 ..     169     242 ..     153     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.9e-06
   PF03306.8  81 akleselskeeleaklekelpskNlfyairieGtFkkvkvrtvpk.qekpyeklvevakkqpefe...fenveG 150
                 a+l+s+ +k++ +akl+++ + + lf  ++ +G F++v +r +p+ q++  e+l++ ++ ++  +   f++++G
  MMETSP0890-20130614|6833_1 169 ARLRSSEKKNNCTAKLSQRAQVAELFRRLKDSGDFDSVGTRYIPNwQNQKAETLAKGVQIKTSRTceaFQQTSG 242
                 566788899999********************************978888899987776555444000555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       678  (0.0495904); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.84
# Mc/sec: 1201.03
//
Query:       MMETSP0890-20130614|6834_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   70.0   0.0    1.5e-19   69.7   0.0    1.0  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
      0.072   12.6   0.0      0.095   12.2   0.0    1.1  1  PF08625.6  Utp13 specific WD40 associated domain


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   2.2e-23   1.5e-19       2     110 ..      19     118 ..      18     125 .. 0.96

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 2.2e-23
  PF00248.16   2 lglGtwslgndeisedealellraaleaGinlfDtAeyYgkgqseellgealkk....srkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdp 110
                 + lGtw     +++  e+++++++a++ G++++D A+ Y    +e+++g alk+    ++ kree++i+ K+     ++ ++++++++  l + L  l++dy+D +++h+p+ 
  MMETSP0890-20130614|6834_1  19 VALGTW-----KSPPGETAAAVKTAIRSGYRYIDAANDY---SNEHEVGMALKElldnEEIKREELFIQAKL-----WNTNHRKAHVKPDLMQTLADLQLDYIDSFVIHWPQA 118
                 578999.....99**************************...***************9**************.....**********************************85 PP

>> PF08625.6  Utp13 specific WD40 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05     0.095      47      90 ..      54     100 ..      26     106 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   PF08625.6  47 gseeieevikkLrkeqle...rlLkfireWntnaktaevAqvvLsvl 90 
                 +++e+  ++k+L ++++    +l+   + Wntn ++a+v   ++++l
  MMETSP0890-20130614|6834_1  54 NEHEVGMALKELLDNEEIkreELFIQAKLWNTNHRKAHVKPDLMQTL 100
                 4567777777765444333559****************988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.71
# Mc/sec: 556.90
//
Query:       MMETSP0890-20130614|6835_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-08   31.9  42.9    9.3e-05   21.8   2.9    6.0  4  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Domain annotation for each model (and alignments):
>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   4.2   0.00023       3.2      15      26 ..     122     133 ..     108     134 .. 0.88
   2 !    2.3   3.7    0.0094   1.3e+02      19      26 ..     190     197 ..     172     198 .. 0.61
   3 !   21.8   2.9   6.8e-09   9.3e-05       1      27 []     312     339 ..     312     339 .. 0.87
   4 !   16.0   2.5   4.8e-07    0.0065       2      26 ..     437     462 ..     436     463 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00023
                 -------SS--- CS
  PF00642.19  15 CpyGdrCkFaHg 26 
                 Cp+G+rC FaHg
  MMETSP0890-20130614|6835_1 122 CPHGSRCFFAHG 133
                 ***********8 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0094
                 ---SS--- CS
  PF00642.19  19 drCkFaHg 26 
                 +rC+FaH+
  MMETSP0890-20130614|6835_1 190 GRCQFAHS 197
                 49999998 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 6.8e-09
                 --S---SGGGG--------..--SS---- CS
  PF00642.19   1 yktelCrffartGtCpyGd..rCkFaHge 27 
                 +kt+lC+++++ G+Cpy +  +C+FaH+e
  MMETSP0890-20130614|6835_1 312 FKTRLCKYHMA-GHCPYAAtnTCQFAHSE 339
                 7******8888.******7446*****95 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 4.8e-07
                 -S---SGGGG------..----SS--- CS
  PF00642.19   2 ktelCrffartGtCpy..GdrCkFaHg 26 
                 +t+lC++f++ G+Cp+   ++C+FaH+
  MMETSP0890-20130614|6835_1 437 FTKLCKYFLA-GHCPFtaSNTCQFAHS 462
                 699*******.*****88899*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:01.03
# Mc/sec: 1440.14
//
Query:       MMETSP0890-20130614|6831_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-85  284.9   0.0    9.5e-85  284.4   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
       0.11   12.3   0.0    1.4e+02    2.3   0.0    4.2  5  PF01556.13 DnaJ C terminal domain


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4   0.0   1.4e-88   9.5e-85       2     315 ..     483     794 ..     482     795 .] 0.92

  Alignments for each domain:
  == domain 1    score: 284.4 bits;  conditional E-value: 1.4e-88
                 HHHHHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT.T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----...TTSHHHHHHHHHHHT.S-HHHHHHHHHHH----S------TT--......--EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.----- CS
  PF00632.20   2 llskellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkflllgkkvtledleeidpelanslkellelessteavedlaltFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfseviptealklftpeelellicGsdklidvedlrrnteydggyn...ansptienlweilke.fspeerrlfLkFvTGssrlPlgGfaelh......pkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFel 315
                 l+s  l+np++ l+ +y+s + ++ +  ++ +s +   + ++l++f+f G+l+gka++++++++ ++ r+++k++l g ++ ++dle++d + + +l +l++l    e+ve l+l+Ft++ed   ++++++el+p+Gan pVtn+n++eYi+l + y+l +++k+q++a++ Gf++v+p+ +l++f+ +elell+cG ++ id++d+++ntey+g y+   a++++ +++wei+ + f++e ++++L+FvTG+s +P++Gf++l+      +kft++   e+ + +P+a+TCfn+++Lp Y++k+++k+ L++Ai+   +gF++
  MMETSP0890-20130614|6831_1 483 LVSDILFNPDFALW-SYSSINQMNMQ--VNPSSGI--ANDEHLRYFHFTGRLLGKALFDRQIVSGHLVRPLYKHIL-GWPLMIDDLEQLDHDTHANLLKLKDL----EDVELLCLDFTVTEDH-WGTANTIELKPDGANCPVTNSNVDEYIQLQMRYRLLDRIKQQVKALLTGFYDVVPEALLSVFDFQELELLLCGLPE-IDMDDWKNNTEYTGDYErkgASHKVTKWFWEIVTDdFDEEHKARLLQFVTGTSGVPAQGFRALQgndnniRKFTVNSIPESVSVFPKAHTCFNRIDLPLYDTKKKMKKFLTMAIQMEATGFDI 794
                 6777788*******.55555544222..2222322..334789*********************************.************************55....568889*****98776.789999**********************************************************************.*****************99999*********************************************************99999*********************************9***96 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3     2e+03      29      44 ..      82      97 ..      80     102 .. 0.81
   2 ?    1.8   0.0     0.028   1.9e+02      25      45 ..     101     121 ..      89     123 .. 0.85
   3 ?    2.3   0.0     0.021   1.4e+02      25      45 ..     149     169 ..     130     181 .. 0.89
   4 ?    1.3   0.0     0.041   2.8e+02      27      45 ..     216     234 ..     210     240 .. 0.81
   5 ?   -1.5   0.0      0.31   2.1e+03      25      45 ..     237     257 ..     234     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.3
  PF01556.13 29 ikvkippgtkpgeklr 44
                 +v++p+g+++g+++ 
  MMETSP0890-20130614|6831_1 82 FYVTVPAGIRTGQEFP 97
                5799*********984 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.028
  PF01556.13  25 dgrkikvkippgtkpgeklri 45 
                 +g+++ v+ ppg++ ge++++
  MMETSP0890-20130614|6831_1 101 NGQQLMVRCPPGIRAGERIVV 121
                 679***************987 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.021
  PF01556.13  25 dgrkikvkippgtkpgeklri 45 
                 +++++ v+ ppg++pg ++ri
  MMETSP0890-20130614|6831_1 149 NNQQLMVTCPPGVRPGMQVRI 169
                 567999***********9998 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.041
  PF01556.13  27 rkikvkippgtkpgeklri 45 
                 +  +v++p+g++pg+ + +
  MMETSP0890-20130614|6831_1 216 QMFEVNVPQGVRPGQAFAL 234
                 5679**********99865 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.31
  PF01556.13  25 dgrkikvkippgtkpgeklri 45 
                 +g+++ v+ pp+ ++g k+r+
  MMETSP0890-20130614|6831_1 237 NGQRVMVTCPPNARQGMKIRF 257
                 689999**********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.72
# Mc/sec: 2645.98
//
Query:       MMETSP0890-20130614|6836_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-13   48.0   0.0    1.2e-12   47.4   0.0    1.2  1  PF00777.13 Glycosyltransferase family 29 (sialyltransferase)
  ------ inclusion threshold ------
      0.043   13.1   0.0      0.083   12.2   0.0    1.4  1  PF04911.7  ATP synthase j chain


Domain annotation for each model (and alignments):
>> PF00777.13  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   1.7e-16   1.2e-12      92     234 ..       3     169 ..       1     180 [. 0.74

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.7e-16
                 -----TTT-----SEEEEBTTB-.--......--TT-EEEE--SSHHHHHHH.HHHT---........-.--BSSSB--S-----GGGE...........EEB-HHHHHHHHHHT---........---------HHHHHHHHH-SEEEE-----.-------BTTB-..-- CS
  PF00777.13  92 pvkgyeeDVGskTtlrlmnpesakksl.kl..laknvsfvlvpfktldllwl.paalstg........qtirsfrapvklrlrvdkekv...........lilnPaflrevakrllekkv......rgkrpstGllalllalelCdeVsvyGFgasdrkknwhhYydnvknk 234
                 p+ g+e +VGs+T++ ++n+ s ++++ ++   + ++ ++    k  +++++ + al+ +        +t + fr++vk +l+  ++ +             l+ ++l+ +++ +   ++        ++ps+Gl  +l+al+ C +V ++GFg   + + + hYy +  ++
  MMETSP0890-20130614|6836_1   3 PILGFEPYVGSRTDIAVTNTPSWSNDPkNKkfVNVTNLLKAQTHKHASFNIIiQDALTVNdsikccfkGTAKNFRVKVKRSLEACQNLIsnmplahgascSKLDASILDAAWRLICAVAKadpkahCHYSPSSGLTSILYALSQCSSVRLFGFGL--G-PSRGHYYAT--DR 169
                 999********************9987544654444444444455555555414444444677777776677888888877776666557777777777755666888888888877777888888899**************************..4.7789***77..33 PP

>> PF04911.7  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05     0.083      29      47 ..      17      35 ..      10      40 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
   PF04911.7 29 dasmnsdEfknDPRnprak 47
                 a  n++ + nDP+n+++ 
  MMETSP0890-20130614|6836_1 17 IAVTNTPSWSNDPKNKKFV 35
                5789************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 920.89
//
Query:       MMETSP0890-20130614|6837_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.70
# Mc/sec: 284.14
//
Query:       MMETSP0890-20130614|6839_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.55
# Mc/sec: 440.06
//
Query:       MMETSP0890-20130614|6840_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1472  (0.107665); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.74
# Mc/sec: 1146.37
//
Query:       MMETSP0890-20130614|6841_1  [L=1129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-18   67.0  29.0    2.1e-07   31.2   0.2    8.5  9  PF08238.7 Sel1 repeat
  ------ inclusion threshold ------
      0.013   15.1   0.4      0.013   15.1   0.3    3.2  3  PF10107.4 Endonuclease related to archaeal Holliday junction resolvase


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00077       5.3       4      37 ..      27      56 ..      19      58 .. 0.72
   2 !   11.2   2.2     6e-05      0.41       9      39 .]      62      91 ..      60      91 .. 0.87
   3 !   31.2   0.2     3e-11   2.1e-07       1      38 [.      92     126 ..      92     127 .. 0.93
   4 !   16.2   0.0   1.6e-06     0.011       3      39 .]     130     163 ..     128     163 .. 0.92
   5 !    6.5   0.6    0.0018        12       2      38 ..     318     359 ..     318     360 .. 0.74
   6 ?   -1.6   0.0      0.64   4.4e+03       3      22 ..     363     378 ..     362     386 .. 0.68
   7 ?   -1.5   0.0      0.58     4e+03      25      35 ..     413     423 ..     408     426 .. 0.89
   8 !    5.1   0.0    0.0048        33       5      39 .]     433     467 ..     432     467 .. 0.78
   9 ?    0.7   0.0      0.12   8.3e+02       6      32 ..     473     503 ..     469     504 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00077
   PF08238.7  4 qynLGlyymylnGlgGvpkdpekAleWyekAAeq 37
                ++++G+ +    G+   +  ++++l+W  kAA++
  MMETSP0890-20130614|6841_1 27 MFRYGCLL--ISGI--NEESKDEGLQWILKAAKN 56
                56666333..5665..455699**********97 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6e-05
   PF08238.7  9 lyymylnGlgGvpkdpekAleWyekAAeqGh 39
                 yy+yl+     +k +++A++W  kAA+ Gh
  MMETSP0890-20130614|6841_1 62 QYYLYLYYS-KNEKKLQEAVYWCNKAANEGH 91
                688888887.57888***************9 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 3e-11
   PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38 
                 a Aq++LG  +myl+G  Gv  d++kA e+++ AA+q 
  MMETSP0890-20130614|6841_1  92 ALAQNQLG--RMYLDGN-GVSVDKRKAAELFQAAASQS 126
                 67******..999***8.9*****************96 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 1.6e-06
   PF08238.7   3 AqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                 ++ nL+   ++l G  Gv ++p++A+ +++k+A++G+
  MMETSP0890-20130614|6841_1 130 GMVNLA--AALLVGS-GVARNPDRAIGLLRKSAKMGD 163
                 699***..7779**9.9******************97 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.0018
   PF08238.7   2 eAqynLGlyymylnGlgGvpk.....d...pekAleWyekAAeqG 38 
                 +Aqy ++ y m + +    +      +     ++++W++ +A+qG
  MMETSP0890-20130614|6841_1 318 QAQYWYAQYCMNEARV---ENhnallNhsrFIEGIQWLQASANQG 359
                 5999999888777776...32223334667888***********9 PP

  == domain 6    score: -1.6 bits;  conditional E-value: 0.64
   PF08238.7   3 AqynLGlyymylnGlgGvpk 22 
                 A+ +LG  ++y+     vp+
  MMETSP0890-20130614|6841_1 363 ACSELG--LLYFQQS--VPA 378
                 7889**..7778875..877 PP

  == domain 7    score: -1.5 bits;  conditional E-value: 0.58
   PF08238.7  25 ekAleWyekAA 35 
                 ++A++++e AA
  MMETSP0890-20130614|6841_1 413 DLAIHYLEIAA 423
                 58********9 PP

  == domain 8    score: 5.1 bits;  conditional E-value: 0.0048
   PF08238.7   5 ynLGlyymylnGlgGvpkd.pekAleWyekAAeqGh 39 
                 + LG+ y+++  l   ++d  +++l W e+AA++G+
  MMETSP0890-20130614|6841_1 433 FHLGTAYIHKALL-INDADsGKRGLFWIERAARAGS 467
                 6778777777776.666666778**********995 PP

  == domain 9    score: 0.7 bits;  conditional E-value: 0.12
   PF08238.7   6 nLGlyymylnGl......gGvpk...dpekAleWye 32 
                  ++  ++y+ G               d +kA eW  
  MMETSP0890-20130614|6841_1 473 LMA--RAYMFGAdnseiiP---GavcDFAKAAEWAS 503
                 566..66678876664441...24448*******76 PP

>> PF10107.4  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3      0.73     5e+03      30      65 ..     187     224 ..     170     230 .. 0.44
   2 ?    1.6   0.6     0.026   1.8e+02      18      51 ..     567     599 ..     557     619 .. 0.52
   3 ?   15.1   0.3   1.9e-06     0.013      21     127 ..     785     898 ..     766     907 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.73
   PF10107.4  30 qlkkaereel.eaqveeeaeaklee.wkkkeekeirkd 65 
                 ++ k+ r e+ + + e++++++l++ +++++ ++i+++
  MMETSP0890-20130614|6841_1 187 HWAKSMRGEKkDINGEQKEKTNLSKnNISSKKSSIQQE 224
                 55444332221333333333333220233333344443 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.026
   PF10107.4  18 ekvekrarelfeqlkkaereeleaqveeeaeakl 51 
                   +++r+r+  +q +++++ e++++ +++++++ 
  MMETSP0890-20130614|6841_1 567 AAAKRRKRRKAKQQRQHQE-EIDEECTQQQQQHK 599
                 4455555555555444333.33333322222222 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.9e-06
   PF10107.4  21 ekrarelfeqlkkaereel.......eaqveeeaeakleewkkkeekeirkdavkksravlkGkvsEqlaPfl.pefkynPkdarflGtPvDyivFdglsegeveeivfvevKtG 127
                 +++++++f++  k +r+ +       ++  ++ + +  +++k+k+ +++++++v++s++vl+ k+ E  + +  ++ +    ++   GtP D +v +g ++  ++eiv+  v + 
  MMETSP0890-20130614|6841_1 785 NEQSSTIFMSSAKPSRDAVvgeevllDKDDDNGEWQLTARQKRKARRNVKEESVSTSKDVLENKIPESKTSISeENIEKAAVEID-NGTPTDIVVQKGGANSPQKEIVVDTVSSP 898
                 555555555555544443345444444444555555667788889999********************99987333444445554.6***************999*998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1173  (0.0857958); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.54u 0.37s 00:00:01.91 Elapsed: 00:00:01.11
# Mc/sec: 2437.38
//
Query:       MMETSP0890-20130614|6846_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.8   0.1        0.2   11.2   0.0    1.2  1  PF08861.5 Domain of unknown function DUF1828
          1    7.3  12.0          1    7.4   8.3    1.1  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF08861.5  Domain of unknown function DUF1828
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05       0.2      31      77 ..      31      78 ..      29      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.9e-05
   PF08861.5 31 LfnLesagidle.kskkRkkilenilskfgieleegelivkvteenla 77
                +++ ++ ++++e + k++k+++e+i+ + ++  +++ ++v ++ e++ 
  MMETSP0890-20130614|6846_1 31 IMEVKMVDLEPEdRVKHKKEEIEQIIVAQNVVNRKEVIYVLINHESYE 78
                6777777888888899***************************99876 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.3   0.00015         1     246     305 ..     118     176 ..      38     188 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00015
   PF09770.4 246 qqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqp 305
                 +qq++++s  +  +p ++ + q+q+++ ++q +ppplqq+++++ ++q  l+s ++p  p
  MMETSP0890-20130614|6846_1 118 EQQSETVSPIVEVPPAMQVAIQSQHPTSQQQPMPPPLQQQPPMQPPPQ-PLTSVNMPPPP 176
                 222222222222222222222223444444444444443333333333.12222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 696.79
//
Query:       MMETSP0890-20130614|6845_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-25   87.3   3.0    3.4e-24   85.4   1.1    2.1  2  PF02405.11 Permease
    2.8e-09   37.2   0.0    6.2e-09   36.1   0.0    1.6  1  PF00005.22 ABC transporter
    3.7e-07   30.2   0.0    0.00016   21.6   0.0    2.8  2  PF13304.1  AAA domain
    7.1e-07   28.6   0.0     0.0025   17.1   0.0    2.5  2  PF13481.1  AAA domain
    5.4e-06   26.7   1.2    1.1e-05   25.7   0.1    2.1  2  PF13191.1  AAA ATPase domain
    5.5e-06   25.7   0.0     0.0069   15.7   0.0    2.4  2  PF01695.12 IstB-like ATP binding protein
    0.00019   20.7   0.3     0.0012   18.2   0.0    2.3  2  PF13555.1  P-loop containing region of AAA domain
    0.00093   18.7   0.0     0.0018   17.7   0.0    1.4  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
    0.00094   18.2   0.0     0.0016   17.5   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
     0.0011   18.9   0.0      0.003   17.5   0.0    1.8  1  PF13401.1  AAA domain
     0.0011   19.5   0.6     0.0028   18.3   0.1    1.9  1  PF13207.1  AAA domain
     0.0019   18.2   0.0     0.0056   16.7   0.0    1.8  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0022   17.1   0.0      0.022   13.8   0.0    2.1  2  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0026   17.5   0.1     0.0064   16.2   0.0    1.8  1  PF13671.1  AAA domain
     0.0055   16.9   0.0      0.016   15.4   0.0    1.8  1  PF13238.1  AAA domain
     0.0073   15.1   0.0      0.013   14.2   0.0    1.3  1  PF00437.15 Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.012   15.8   0.2       0.13   12.4   0.0    2.5  3  PF13476.1  AAA domain
      0.014   14.3   0.0       0.03   13.2   0.0    1.5  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.015   14.2   0.0       0.18   10.6   0.0    2.2  2  PF13175.1  AAA ATPase domain
      0.024   14.4   0.0      0.081   12.7   0.0    1.9  1  PF13558.1  Putative exonuclease SbcCD, C subunit
      0.031   13.8   0.4       0.19   11.3   0.0    2.4  2  PF13245.1  Part of AAA domain
      0.044   13.2   0.0       0.09   12.2   0.0    1.6  1  PF05729.7  NACHT domain
      0.054   12.8   0.0       0.41    9.9   0.0    2.1  2  PF00158.21 Sigma-54 interaction domain
      0.056   13.0   0.1       0.12   11.9   0.0    1.6  1  PF03266.10 NTPase
      0.056   13.0   0.0       0.15   11.6   0.0    1.7  1  PF07728.9  AAA domain (dynein-related subfamily)
      0.059   13.2   0.0       0.15   11.9   0.0    1.7  1  PF13521.1  AAA domain
      0.062   12.5   0.0       0.12   11.6   0.0    1.5  1  PF00625.16 Guanylate kinase
      0.066   11.9   0.0       0.11   11.2   0.0    1.2  1  PF00931.17 NB-ARC domain
      0.088   11.2   0.1       0.37    9.2   0.0    1.9  2  PF13148.1  Protein of unknown function (DUF3987)
        0.1   12.6   0.0       0.25   11.4   0.0    1.7  1  PF00910.17 RNA helicase
        0.2   11.1   0.0        0.4   10.1   0.0    1.4  1  PF13479.1  AAA domain


Domain annotation for each model (and alignments):
>> PF02405.11  Permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.64   2.8e+02       6      51 ..     250     295 ..     245     302 .. 0.80
   2 !   85.4   1.1   7.7e-27   3.4e-24      46     215 .]     342     530 ..     327     530 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.64
  PF02405.11   6 qlaevgvgslpivlllglfiGavlalqgasqlkkfgaesllgslva 51 
                 +l + g+ +lp++ll+ + +G+ ++   a  l+++  ++ l +lv+
  MMETSP0890-20130614|6845_1 250 KLIDYGFFTLPLILLAFAAAGLAVSTLAADMLRRLDPAPQLDTLVS 295
                 6677889999999999999999999999999999888777766665 PP

  == domain 2    score: 85.4 bits;  conditional E-value: 7.7e-27
  PF02405.11  46 lgslvalalvrelgPvltallvagrvGsaiaAelGtmrvteeiDALevlgidpvaylvvPRllAllialplltlladlvgilggylvsvvllgispgaylqslqsavelkdvlvg.....................liKalvfgliialigcyqGltakggaegVgeattraVvtsivlvlvvdfvltlll 215
                  ++ ++ ++v elgP+ltall+agr+G ++a e+ +m++t + D L++l+++p    ++P llA+++a+p+lt++ ++++++ ++ v+  +  ++ g +++s ++   + +++                       +iK+l+f  +i   +     + + + + V + +t+aVv s+++++++df +++l+
  MMETSP0890-20130614|6845_1 342 YAAGATRLFVLELGPLLTALLLAGRIGGSYAGEISSMQATRQNDLLTTLDLSPRFWSLAPALLAGILAAPVLTIIGTALALVIARHVGSNA--LQNGDWFTSHFRHAAFPHLYARlknrsllqafinlltwppifhIIKSLTFIGLIFSSSELFARRSRLSLRAVPHVITAAVVFSSLAIIIADFAFSQLF 530
                 55566778899*************************************************************************9999854..45666666666666666888888***********************************************************************9986 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.4e-11   6.2e-09       1     117 [.      53     165 ..      53     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.4e-11
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH.EEEE-------.--BHHHHHH----S--....-HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr.igyipqdpllfpeltvrenldmakeekk....tdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEPt 117
                 +TL+ +l++ +k     i++++++         + +  g ++q+ +l   l +  n++ a +  +     ++++++++e+vgld  +  k+ +++LSgG+++r alA  ++ + ++++LDEP+
  MMETSP0890-20130614|6845_1  53 TTLASALLAPVK--DINITWNKKI--------PEYErCGALFQQSTLLDALCLAANVRLAVSRGTknlsPQSEAKRLVEAVGLDWaRDGKKMPTELSGGMARRGALALQVAMRKRIVILDEPF 165
                 577777777777..4555555222........222238999999999978888888877776655778799**************8888899******************************7 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.028        12       3      20 ..      43      60 ..      41      79 .. 0.79
   2 !   21.6   0.0   3.6e-07   0.00016     235     302 ..     136     201 ..     108     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.028
   PF13304.1  3 viiGpNgsGKSnlLkald 20
                ++ Gp g+GK++l +al 
  MMETSP0890-20130614|6845_1 43 LLSGPSGVGKTTLASALL 60
                567*************94 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3.6e-07
   PF13304.1 235 sdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsn.ggsQlifTTHSpvll 302
                  +lS G+ r    ++al  a +k +++++DEp  gL+   +r+++  l+ l++ +g+ +++++H p+l+
  MMETSP0890-20130614|6845_1 136 TELSGGMARR--GALALQVAMRK-RIVILDEPFVGLDAQSQRAVAHELRVLRKkYGTAFLIVSHQPNLV 201
                 4569999997..33445555555.***************************99999999********94 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.7e-06    0.0025      29      55 ..      35      61 ..      28      81 .. 0.90
   2 !    8.8   0.0    0.0019      0.84     153     189 ..     164     197 ..     125     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5.7e-06
   PF13481.1 29 llprgsltllaGapgtGKStlalqlaa 55
                +l +g ++ll G++g+GK+tla +l+a
  MMETSP0890-20130614|6845_1 35 VLKAGDVVLLSGPSGVGKTTLASALLA 61
                5789********************997 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0019
   PF13481.1 153 rlvggdensnsdvgaviaalerlakrtgaavllvhHt 189
                  +vg d +s+   +av+ +l+ l+k++g+a+l+v H 
  MMETSP0890-20130614|6845_1 164 PFVGLDAQSQ---RAVAHELRVLRKKYGTAFLIVSHQ 197
                 5555555555...589********************6 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.5e-08   1.1e-05      21     152 ..      38     177 ..      28     194 .. 0.53
   2 ?   -1.8   0.0       7.1   3.1e+03      75      75 ..     318     318 ..     244     413 .. 0.65

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.5e-08
   PF13191.1  21 egsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn...lpysaiiqalrellrqlltelaaelggwreallaalga................lipelegiiglqalvalldaalartr.......rpklvlvlDD.lqwadresldlLe 152
                 +g  ++l++GpsG+GK++L+ +l++p +++    +  k+ +++r            ++ +ll++l+ +   +l+  r  ++ +  +                 +   + + g  a            +       r+  +++lD+    +d++s+ +++
  MMETSP0890-20130614|6845_1  38 AGD-VVLLSGPSGVGKTTLASALLAP-VKDINITWNKKIPEYERCgalF-------QQSTLLDALCLAANVRLAVSRGTKNLSPQSeakrlveavgldwardGKKMPTELSGGMARRG---------AlalqvamRK-RIVILDEpFVGLDAQSQRAVA 177
                 444.9*****************9999.6778888888888888875442.......24444444444444444444433333333323323333343333331222222222222222.........1222333322.577777665555555555555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 7.1
   PF13191.1  75 l 75 
                  
  MMETSP0890-20130614|6845_1 318 T 318
                 1 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05    0.0069      41      67 ..      32      59 ..      22      70 .. 0.81
   2 !    7.4   0.0    0.0052       2.3     102     148 ..     149     197 ..     141     214 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.6e-05
  PF01695.12 41 lsfveqa.enlvllGpsGvGKthlAial 67
                l+fv +a + ++l GpsGvGKt lA al
  MMETSP0890-20130614|6845_1 32 LRFVLKAgDVVLLSGPSGVGKTTLASAL 59
                56665541567788************98 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0052
  PF01695.12 102 alkrlakvdllilDd..lgllplseeeakllfellskryerrsiiltsn 148
                 al+  ++ +++ilD+  +gl + s+ + ++ +++l k+y+++ +i++ +
  MMETSP0890-20130614|6845_1 149 ALQVAMRKRIVILDEpfVGLDAQSQRAVAHELRVLRKKYGTAFLIVSHQ 197
                 67889999*******888************************9999876 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.7e-06    0.0012      22      44 ..      38      60 ..      28      72 .. 0.82
   2 ?   -0.6   0.1         2   8.7e+02      37      44 ..      87      94 ..      86      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.7e-06
   PF13555.1 22 kgkntlltGasGsGKSTllDAiq 44
                +g+++ll+G+sG+GK+Tl  A+ 
  MMETSP0890-20130614|6845_1 38 AGDVVLLSGPSGVGKTTLASALL 60
                6889**************97764 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2
   PF13555.1 37 STllDAiq 44
                STllDA+ 
  MMETSP0890-20130614|6845_1 87 STLLDALC 94
                9*****85 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     4e-06    0.0018      10      39 ..      34      63 ..      27      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4e-06
  PF02367.12 10 ellkagdvvlLsGdlGaGKTtlvkglakgl 39
                  lkagdvvlLsG+ G GKTtl+ +l+  +
  MMETSP0890-20130614|6845_1 34 FVLKAGDVVLLSGPSGVGKTTLASALLAPV 63
                5799*******************9997655 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.7e-06    0.0016      27      57 ..      30      61 ..      13      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.7e-06
                HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
  PF03193.11 27 eelaellkd.ktsvlvGqSGvGKSsLinallp 57
                ++l+++lk  ++++l G+SGvGK++L  all 
  MMETSP0890-20130614|6845_1 30 QDLRFVLKAgDVVLLSGPSGVGKTTLASALLA 61
                7899999998999*************999865 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.8e-06     0.003       5      68 ..      40     103 ..      36     201 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.8e-06
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvv.fveapastspkellqkllsalglpakg 68 
                  +++++G+sGvGKTtl+  l+    + + ++++ ++  +  + a   +++ll +l+ a  + +  
  MMETSP0890-20130614|6845_1  40 DVVLLSGPSGVGKTTLASALLAPV-KDINITWNKKIPeYERCGALFQQSTLLDALCLAANVRLAV 103
                 5789****************9964.4455555444443444555555555555555555555544 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   6.3e-06    0.0028       1      19 [.      41      59 ..      41      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.3e-06
                EE--B--TT---HHHHHHH CS
   PF13207.1  1 viaitGppGsGKsTlakeL 19
                v++++Gp+G+GK+Tla +L
  MMETSP0890-20130614|6845_1 41 VVLLSGPSGVGKTTLASAL 59
                799*************998 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-05    0.0056       1      21 [.      42      62 ..      42      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-05
                EEEE-------HHHHHHHHHH CS
  PF00004.24  1 vllyGppGtGKTllakavake 21
                vll+Gp G+GKT+la+a+   
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASALLAP 62
                79***************9865 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.85   3.7e+02      26      44 ..      41      59 ..      30      63 .. 0.87
   2 !   13.8   0.0     5e-05     0.022     136     204 ..     137     203 ..     108     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.85
                EEEE--------HHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
  PF02463.14 26 ftaivGpNGSGKsnvldAi 44
                +  + Gp G GK+ +  A+
  MMETSP0890-20130614|6845_1 41 VVLLSGPSGVGKTTLASAL 59
                56789**********9998 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5e-05
                 G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BT..BEEEEE-S-HHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
  PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkekskn..aQfivislreemlek 204
                 +LSgG     alaL +A++k     +++lDe    LD++  ++va+ l+  +k+  + f+++s++ +++ +
  MMETSP0890-20130614|6845_1 137 ELSGGMARRGALALQVAMRKR----IVILDEPFVGLDAQSQRAVAHELRVLRKKygTAFLIVSHQPNLVIE 203
                 799999999999999988764....99**********************777665699*******998755 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-05    0.0064       1      25 [.      41      67 ..      41     199 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-05
   PF13671.1  1 lvllvGlpGsGKstlaerllkklg..y 25
                +vll G++G GK+tla +ll++ +   
  MMETSP0890-20130614|6845_1 41 VVLLSGPSGVGKTTLASALLAPVKdiN 67
                89*****************98776443 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.5e-05     0.016       1      19 [.      42      60 ..      42      86 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.5e-05
   PF13238.1  1 IlitGtpGvGKtTlakeLa 19
                +l++G++GvGKtTla +L 
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASALL 60
                789*************994 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-05     0.013     123     155 ..      34      66 ..      11      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-05
  PF00437.15 123 qavqargnilvsGgTgsGKttllnallaeinkd 155
                   ++a  ++l+sG+ g GKttl++alla +++ 
  MMETSP0890-20130614|6845_1  34 FVLKAGDVVLLSGPSGVGKTTLASALLAPVKDI 66 
                 33344689*******************998875 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0003      0.13      14      39 ..      31      59 ..      26      61 .. 0.79
   2 ?   -0.5   0.0       2.7   1.2e+03      33      42 ..      87      96 ..      87     116 .. 0.92
   3 ?   -1.5   0.1       5.3   2.3e+03     177     191 ..     224     238 ..     171     254 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0003
   PF13476.1 14 eidF...skgltlItGpNGsGKTTildAi 39
                ++ F      ++l++Gp G GKTT+  A+
  MMETSP0890-20130614|6845_1 31 DLRFvlkAGDVVLLSGPSGVGKTTLASAL 59
                555666444699**************998 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 2.7
   PF13476.1 33 TTildAicla 42
                +T+ldA+cla
  MMETSP0890-20130614|6845_1 87 STLLDALCLA 96
                8*******98 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 5.3
   PF13476.1 177 llqeeekekeleele 191
                 l qe+++++e + le
  MMETSP0890-20130614|6845_1 224 LRQENKEKEEFQYLE 238
                 223333333444443 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.9e-05      0.03      49      70 ..      38      59 ..      29      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.9e-05
   PF05496.7 49 aldhvllyGpPGlGkttlakii 70
                a d vll+Gp G+Gkttla+ +
  MMETSP0890-20130614|6845_1 38 AGDVVLLSGPSGVGKTTLASAL 59
                5699**************9754 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.36   1.6e+02      23      56 ..      40      80 ..      15     115 .. 0.76
   2 ?   10.6   0.0   0.00041      0.18     371     415 .]     156     201 ..     150     201 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.36
   PF13175.1 23 slnviiGeNgsGKttILeal.......eklknrknmlfikk 56
                ++ ++ G +g+GKtt+ +al        +  n+k+ +++++
  MMETSP0890-20130614|6845_1 40 DVVLLSGPSGVGKTTLASALlapvkdiNITWNKKIPEYERC 80
                56688999************988887555556665555555 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00041
   PF13175.1 371 n.IlliDEPeahlhptlqkellefLkelakknniqiiitTHsphlv 415
                 + I+++DEP++ l+++ q+ +   L  l kk++  ++i +H p lv
  MMETSP0890-20130614|6845_1 156 KrIVILDEPFVGLDAQSQRAVAHELRVLRKKYGTAFLIVSHQPNLV 201
                 349****************************************997 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00018     0.081      61      85 ..     153     177 ..     126     181 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00018
   PF13558.1  61 epsirlvfLDEAFsklDeeniasll 85 
                   + r+v+LDE+F +lD++++++++
  MMETSP0890-20130614|6845_1 153 AMRKRIVILDEPFVGLDAQSQRAVA 177
                 45679***************99876 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00043      0.19      10      31 ..      39      59 ..      32      82 .. 0.82
   2 ?   -1.4   0.1       4.1   1.8e+03      23      53 ..     319     348 ..     318     356 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00043
   PF13245.1 10 npllvvtGgPGtGKTttlaaii 31
                  ++++ G+ G GKT tla + 
  MMETSP0890-20130614|6845_1 39 GDVVLLSGPSGVGKT-TLASAL 59
                579999*********.655554 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 4.1
   PF13245.1  23 KTttlaaiiaallaarekp.grsvllvaptgr 53 
                 KT ++ a +++ll++ + p  ++  ++a+ +r
  MMETSP0890-20130614|6845_1 319 KT-LVRAKARQLLDT-AMPpAKQAIYAAGATR 348
                 67.888888888864.6666666666665444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.09       1      21 [.      40      60 ..      40      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0002
   PF05729.7  1 rtvilqGeaGsGKTtLlqkla 21
                ++v+l G++G+GKTtL+  l 
  MMETSP0890-20130614|6845_1 40 DVVLLSGPSGVGKTTLASALL 60
                589**************9886 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00093      0.41      17      43 ..      34      60 ..      21      87 .. 0.84
   2 ?   -0.1   0.0       1.1   4.9e+02     100     118 ..     373     391 ..     366     394 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00093
                HHTTS-S-EEEE-------HHHHHHHH CS
  PF00158.21 17 kvaktdltvlitGesGtGKellAraih 43
                 v k    vl+ G sG+GK++lA+a+ 
  MMETSP0890-20130614|6845_1 34 FVLKAGDVVLLSGPSGVGKTTLASALL 60
                556666789**************9986 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.1
                 ET-----HHHHHHHHHHHH CS
  PF00158.21 100 DeigelplelQekLlrvlq 118
                  ei++++++ Q+ Ll++l+
  MMETSP0890-20130614|6845_1 373 GEISSMQATRQNDLLTTLD 391
                 59**************998 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00027      0.12       2      27 ..      42      67 ..      41      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00027
                EEEE-------HHHHHHHHHH-...- CS
  PF03266.10  2 vfiTGepgvGKtTlvkkvlellkseg 27
                v+++G++gvGKtTl + +l+ +k+ +
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASALLAPVKDIN 67
                789*************9998887655 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00034      0.15       2      21 ..      42      61 ..      41      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00034
                EEEE------HHHHHHHGGG CS
   PF07728.9  2 vlLvGppGtgKselaerlae 21
                vlL Gp+G+gK++la  l++
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASALLA 61
                89*************99876 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00033      0.15       2      21 ..      42      61 ..      41      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00033
   PF13521.1  2 ivitGgpstGKTtlleaLaa 21
                + ++G++++GKTtl++aL a
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASALLA 61
                789**************965 PP

>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00028      0.12       4      28 ..      41      65 ..      38      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00028
                EEEEE------HHHHHHHHHHH-TT CS
  PF00625.16  4 pivlvGpsgvGkstlkkaLldelpe 28
                 + l+GpsgvGk+tl++aLl+  ++
  MMETSP0890-20130614|6845_1 41 VVLLSGPSGVGKTTLASALLAPVKD 65
                5789****************97765 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.11      20      41 ..      40      61 ..      31      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
                EEEEEE-------HHHHHHHTS CS
  PF00931.17 20 kvvglvGmgGvGKttlakqvyk 41
                +vv l+G  GvGKttla++ + 
  MMETSP0890-20130614|6845_1 40 DVVLLSGPSGVGKTTLASALLA 61
                6899*************99874 PP

>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00083      0.37      43      72 ..      43      72 ..      41      79 .. 0.88
   2 ?   -1.2   0.0       1.2   5.1e+02     339     367 ..     418     446 ..     405     448 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00083
   PF13148.1 43 lvvaesGegKsavdklallpleeieeelre 72
                l+ ++sG gK+++ +++l+p+++i+  +++
  MMETSP0890-20130614|6845_1 43 LLSGPSGVGKTTLASALLAPVKDINITWNK 72
                6789********************988776 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.2
   PF13148.1 339 tgdeleIsaedfeaAlalaeyllrharrl 367
                 t  +l I ++   +Al+ ++++ +h+r++
  MMETSP0890-20130614|6845_1 418 TALALVIARHVGSNALQNGDWFTSHFRHA 446
                 45566777777789999999999999986 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00058      0.25       1      23 [.      42      64 ..      42      79 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00058
  PF00910.17  1 iwlyGpsgeGKStlakeLakall 23
                ++l+Gpsg+GK+tla  L + + 
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASALLAPVK 64
                6799************9876655 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00091       0.4       6      23 ..      42      59 ..      40      65 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00091
   PF13479.1  6 vliYGkpGiGKTslaktl 23
                vl+ G++G+GKT+la+ l
  MMETSP0890-20130614|6845_1 42 VLLSGPSGVGKTTLASAL 59
                6788***********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.93
# Mc/sec: 1412.05
//
Query:       MMETSP0890-20130614|6847_1  [L=1436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-82  275.3   0.0    9.2e-82  274.6   0.0    1.4  1  PF02574.11 Homocysteine S-methyltransferase
    4.3e-45  152.5   0.0    9.4e-45  151.4   0.0    1.6  1  PF02965.12 Vitamin B12 dependent methionine synthase, activation domain
    1.6e-36  125.5   0.1    3.1e-36  124.5   0.1    1.5  1  PF00809.17 Pterin binding enzyme
      7e-21   73.9   0.0    2.5e-20   72.1   0.0    2.1  1  PF02607.12 B12 binding domain
      3e-19   68.9   0.1    1.7e-17   63.3   0.0    2.9  2  PF02310.14 B12 binding domain


Domain annotation for each model (and alignments):
>> PF02574.11  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.6   0.0   3.4e-85   9.2e-82       2     304 ..     177     487 ..     176     488 .. 0.96

  Alignments for each domain:
  == domain 1    score: 274.6 bits;  conditional E-value: 3.4e-85
                 H----B------HHHHHH-----.........------THHHH-HHHHHHHHHHHH.H----EEE-S-TT-S---------------HHHHHHHHHHHHHHT-...--....-EEE---B............--HHHHTT-HHHHHHHHHHHHHHHHHTT-S-EEEE..C.ESSHHHHHHHHHH.HCT---...-EEEEE--.-------------HHHHHH.--.--EE-EESSS-HHHHHHHHHHHH--T--EEEEE--SB--TT--TTSTT-----GGG-HHHHHHHHHHHH.-B--------HHHHHHHHHHTT CS
  PF02574.11   2 lvldGgmgtelqrkglnladplwsak......legaleelslekpelirevhkaYl.eAGadiieTntfqatleslaeygledeelrelneraveiAraaadeyvegdk...rlvaGsiGpygatla...gseypgeygvsleelkkayreqlevlleagvDlLlletipdveeakaavraveevfeepavislpvkdsgtlvdgtgleeagaiieaalnsv.qaeivavGvNCalgakeadeilellkltrkaplvvyPnsgepldaekeydenpaelaesleqtlkkfvesga.riiGGCCgttPdhIreiakavd 304
                 +  dG+mgt++q+++l+++d++++++       +g++++ls++kp++i  ++++Yl e+G+++i Tntf++t++++a+y++++   +eln+ ++++Ar+++d+++ +d+   r+v G iGp+++t++   ++++p+ ++++++el++ay eq  +l+++g+D+L++eti+d+++akaav+av e++e  a + +p+ +sgtlvd++g++++g+++ea+++s+ +a++++vG+NCalga  ++ +l+ l    ++++ vy n+g+p++ +  yd +p+++a         f+e+g  ++iGGCCg+tP hI++i++a++
  MMETSP0890-20130614|6847_1 177 TMYDGAMGTMIQKHKLEEEDFRGERFkdyhmlIKGNNDLLSITKPDIIGGIYEKYLvEGGSQLIGTNTFSSTTIAQADYDMQSLI-YELNYDSARLAREVCDKVTAQDPtkpRFVVGAIGPTNRTASispDVNDPTARNCTFDELVEAYYEQCVGLVDGGADILIVETIFDTLNAKAAVFAVNEYLEH-ANVDIPLIISGTLVDQSGRTLSGQTGEAFYASIrHAKPICVGLNCALGASAMAPFLKRLADCAECFVHVYSNAGLPNAMG-GYDDTPQDMAR----ENLMFAENGWvNMIGGCCGSTPPHIAAIQEAIK 487
                 678****************************************************659***************************.*****************994444457**************999*******************************************************8888.566**********************************************************66*****************.***********....5567**************************986 PP

>> PF02965.12  Vitamin B12 dependent methionine synthase, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   3.5e-48   9.4e-45       1     136 []    1265    1401 ..    1265    1401 .. 0.99

  Alignments for each domain:
  == domain 1    score: 151.4 bits;  conditional E-value: 3.5e-48
                  -EEE----EEE-ETHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT.S---TT----HHHHHTT-----------TTS--CCHHHHHHHHCT.HHH---EE-TTS-EESSSEE-------TT------ CS
  PF02965.12    1 sdvlglfavtlGeeveelikelfakgddtkailvdalgsalaEalaeelhkrlrke.wgysekenleitdllkerYqGiryspGYpawPdlteqakllelle.eeriGvklteslalvPeksvsglvgihpaakyfav 136 
                  +d+lg+fav++ +++ee +++++a++dd ++i+++al+++l+Ea ae lh+++r++ wgy+ +e l+ +dl+k +Y+Gir++pGYp++Pd+te++++++ll+ e r G+kl+es+ ++P++svs+lv++hp+a+yfav
  MMETSP0890-20130614|6847_1 1265 KDYLGMFAVAC-FGAEEWANKYEAQNDDFSKIMMQALADRLVEACAEALHRDMRTKyWGYASDETLSAEDLIKVKYEGIRPAPGYPSQPDHTEKRTMWDLLDvESRSGIKLSESISMMPASSVSALVFAHPEATYFAV 1401
                  69*********.****************************************************************************************************************************85 PP

>> PF00809.17  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.1   1.1e-39   3.1e-36       1     210 []     523     736 ..     523     736 .. 0.96

  Alignments for each domain:
  == domain 1    score: 124.5 bits;  conditional E-value: 1.1e-39
                 EEEE---B-----HHHHHHHHHHH.......HHHHHH----EEEEE........--SGCHHHHHHHHHHHHHHH.HHTTSEEEEE-SSHHHHHHHHHC.SS-EEEEEEBS-H....HHHHHHHHHH---EEEEE---...-----SHHHHHHHHHHHHHHHHHCHHHHHH....GGGEEEETTTT...TTSTTHHHHHHHHHHHHHCS...HS--EEE--BGGGCTT CS
  PF00809.17   1 ilnvtedsfsdggkflskekaleq.......aremveeGAdiiDiGgestrPgagmvskeeelerlvpvlealrkeeekvpiSiDtfkaevaeaAlka.gadiindvsglen....deemaklaaeygaavVlmhmdgkpktmqeeleyevdvveellealeerlealeeaGipperiilDpgigf..gkteehnlellktldalrel...lgapllvggsrkrfig 210
                 ++nv+e+++++g+++++   +  +       a+++ve+GA+i+D+++++     gm+++ +++++++++  + ++ ++kvp++iD++k+e++ea+lk  +++ i+++++l+     ++e a  ++++gaavV+m++d  +++++ + e +v ++++ +  l ++         ppe+i++Dp+i +  ++ eehn + ++++ a+re+    ++  ++gg+++ ++g
  MMETSP0890-20130614|6847_1 523 FVNVGERCNIAGSRKFKRLVMEGKfaeamdiAKDQVENGAHIVDVNVDD-----GMLDGMNAMQKFIKMAVTEPD-VSKVPFMIDSSKFEIVEAGLKWcQGKPIVNSISLKVgeekFKEHALCLRKHGAAVVVMAFD--EQGQAASREDKVRICKRSYDILVSE-----PIYYPPEDIVFDPNILTigTGIEEHNNYGVDFIAAVREIkqvCPWAKISGGVSNLSFG 736
                 69***************99888779999*********************.....********************7.9********************************9988899*********************..**********************985.....7889***********99**9***************9999888999*********9986 PP

>> PF02607.12  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   9.1e-24   2.5e-20       1      79 []     831     913 ..     831     913 .. 0.94

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 9.1e-24
  PF02607.12   1 dmpleerlleaildgdkekaeelleealsa.g...hgpldiindvlmpamrevGdlwergeislpqehlsaevmkralaalep 79 
                 dmp+eer+++++++g  e +++++ee++++       pl++i++ lm +m+ vGdl+++g+++lpq+++sa+vmk+a+a+l p
  MMETSP0890-20130614|6847_1 831 DMPIEERITHSLVKGISEFVDKDTEELRAEiAargGRPLEVIEGPLMAGMNVVGDLFGSGKMFLPQVIKSARVMKKAVAYLLP 913
                 69************************7766556669********************************************976 PP

>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.056   1.5e+02      17      72 ..     354     423 ..     345     456 .. 0.80
   2 !   63.3   0.0   6.2e-21   1.7e-17       2      96 ..     944    1038 ..     943    1050 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.056
  PF02310.14  17 layvaaalraaGfeveil..danven..........edivealaaeepdvvglSal..ftssleaakela 72 
                 +  v ++l+ a +++ ++  +  v++          e++ ++++  +p +vgl +    ++ ++ +k+la
  MMETSP0890-20130614|6847_1 354 VFAVNEYLEHANVDIPLIisGTLVDQsgrtlsgqtgEAFYASIRHAKPICVGLNCAlgASAMAPFLKRLA 423
                 567889999999988855568888888999999999*****************99844344444555555 PP

  == domain 2    score: 63.3 bits;  conditional E-value: 6.2e-21
  PF02310.14    2 kvvlatvggdvhplGlayvaaalraaGfeveildanvenedivealaaeepdvvglSalftssleaakelaraakrvrprvkvvvGGahvtaape 96  
                  k+++atv+gdvh++G+++va +l  + ++v+++++ +e ++i+e+++++++d++glS l t+sl+++  +a++  +++ +v++++GGa  + ++ 
  MMETSP0890-20130614|6847_1  944 KFLIATVKGDVHDIGKNIVAVVLGCNNYKVYDIGVMCECDKILEKAKEYKVDAIGLSGLITPSLDEMVFVAKEMSKKGLQVPLLIGGATTSKMHT 1038
                  789**********************************************************************999999********87666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:01.12
# Mc/sec: 3045.28
//
Query:       MMETSP0890-20130614|6849_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    8.3  12.8        2.6    7.3   8.9    1.5  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.9   0.00019       2.6      10      35 ..     208     233 ..     207     235 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00019
   PF04886.7  10 PTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 PT +PT +Pt  PT  Pt+ Pt+ Pt
  MMETSP0890-20130614|6849_1 208 PTPAPTFAPTFTPTFTPTSIPTGIPT 233
                 66777777777777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.77
# Mc/sec: 1353.79
//
Query:       MMETSP0890-20130614|6850_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-88  295.4   0.0    1.6e-87  293.7   0.0    1.8  2  PF00773.14 RNB domain
    0.00023   21.1   0.7    0.00023   21.1   0.5    1.8  2  PF13638.1  PIN domain


Domain annotation for each model (and alignments):
>> PF00773.14  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.15     1e+03     212     244 ..      32      65 ..      30      92 .. 0.78
   2 !  293.7   0.0   2.3e-91   1.6e-87       1     322 [.     318     653 ..     318     655 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.15
  PF00773.14 212 elvArfls.ennipgiyrihpepakeklenlles 244
                 +++A++l+ + + ++i+ + ++ +++k+ + l++
  MMETSP0890-20130614|6850_1  32 RMAAEYLVtKTGENCIILVSDDVENRKQAQKLKI 65 
                 57899*99899*************9966554443 PP

  == domain 2    score: 293.7 bits;  conditional E-value: 2.3e-91
  PF00773.14   1 rkdl.rdlpvitIDpetakdlDdAisieklsdgnyelgVhIADvthyvkpdseldkearkrgtsvyLpekvvpMLPeelsedlcsllpgedrlalsveitldkk.gev.lsveiypsiirskarltyeevqelledkdnekkkskvakdLeklyelakalrkkRlkrgaldledkpeskfdldedkepkeknekkssesseahslveefmllaNelvArfls.ennipgiyrihpepakeklenllesl....elnlseeksl....slekllqe..eesnnklllsvllrralnkany......ssepagHfgLglniYthfTSPirRYpDllvhrqLkai 322
                 r dl ++l v++IDp++++d+DdA+s    +++++e+g+hIADvth++kp+++ld+ear+rgts+yL++++++MLP++l+e lcsl+p++dr+a+s++itld +  e+  ++++++ iirs+a lty e+q +++++  +++    a+++++l ++a++lrk+R +rgal l  +pe+kf+l ++++ ++++     +  ea++ vee mllaN +vA+++   ++  +++r+hpep +e++  l+  +    +l+ +++++l    sl+  + +    + + +ll+ l + ++  a+y       ++  +H+gL+++ YthfTSPirRY+D++vhr+L a+
  MMETSP0890-20130614|6850_1 318 RVDLrESLIVCSIDPPNCRDIDDALSAVLVNKNQIEIGIHIADVTHFCKPGTALDEEARHRGTSTYLVDRRLDMLPKKLTERLCSLRPNVDRYAFSAFITLDIHsAEIcGEPRFVKCIIRSRAALTYHEAQLMIQGESPNDEV---AESVRRLAKMARILRKNRMARGALTL-ASPEVKFALANESDTPTDVGAY--QLVEANTTVEEYMLLANICVANKVLsVFPGLALLRHHPEPPQERFLPLKSKAsiglNLEINTTSNLhlakSLDAACSMidPSNYSHKLLRCLATWCMAPARYfcaadkPKNEWQHYGLAAQVYTHFTSPIRRYADVVVHRLLAAA 653
                 78997888999********************999********************************************************************9999999***************************9999888...9*************************.*********9988888888888..8********************9998899***************66555555566887788888888666666666666865556667789***************996555569****************************986 PP

>> PF13638.1  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.5   3.4e-08   0.00023      78     131 ..      17      68 ..       3      71 .. 0.81
   2 ?   -3.2   0.1         1   7.1e+03      87     106 ..     170     189 ..     138     196 .. 0.56

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.4e-08
   PF13638.1  78 erleeeelekdknDnrIlavalelqeekparkvvLvskDinlrikAkalgleae 131
                 ++++++   +d+nD++I  +a +l  ++ ++ ++Lvs+D+++r +A+ l + a 
  MMETSP0890-20130614|6850_1  17 NKMDAS--ANDRNDRAIRMAAEYLVTKTGENCIILVSDDVENRKQAQKLKISAL 68 
                 333333..257**************************************99986 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1
   PF13638.1  87 kdknDnrIlavalelqeekp 106
                 +++++n Il+    ++ee++
  MMETSP0890-20130614|6850_1 170 NKQKENFILKLGAVYEEEES 189
                 33555666665555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.43s 00:00:01.70 Elapsed: 00:00:00.91
# Mc/sec: 2422.69
//
Query:       MMETSP0890-20130614|6852_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.57
# Mc/sec: 1598.95
//
Query:       MMETSP0890-20130614|6851_1  [L=1141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-37  127.5  18.9    2.5e-25   89.3   7.4    2.3  2  PF00664.18 ABC transporter transmembrane region
    4.3e-23   81.8   0.1    8.4e-15   55.0   0.1    2.6  2  PF00005.22 ABC transporter
    1.6e-10   40.4  11.5    2.2e-05   23.7   0.2    4.2  2  PF02463.14 RecF/RecN/SMC N terminal domain
    3.7e-06   26.6   0.1    0.00053   19.7   0.0    3.1  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    4.2e-06   26.1   2.9       0.12   11.6   0.8    3.2  2  PF13481.1  AAA domain
    6.8e-06   26.1   0.1      0.045   13.7   0.0    3.0  2  PF13401.1  AAA domain
      3e-05   24.6   0.1       0.13   12.9   0.0    3.0  2  PF13207.1  AAA domain
    0.00012   21.8   1.2      0.046   13.5   0.0    3.3  3  PF13671.1  AAA domain
    0.00017   21.8   3.2     0.0042   17.3   0.1    2.8  2  PF13191.1  AAA ATPase domain
    0.00029   20.0   0.3      0.034   13.2   0.0    3.0  3  PF12846.2  AAA-like domain
    0.00067   19.0   0.2       0.37   10.0   0.0    3.0  3  PF01695.12 IstB-like ATP binding protein
     0.0023   18.2   1.9       0.93    9.6   0.2    2.6  2  PF13476.1  AAA domain
     0.0024   17.3   0.4       0.02   14.4   0.0    2.2  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0034   16.1   0.3      0.087   11.5   0.0    2.3  2  PF00931.17 NB-ARC domain
     0.0042   16.4   0.6          1    8.8   0.2    2.5  2  PF13555.1  P-loop containing region of AAA domain
     0.0047   16.8   2.5        6.9    6.4   0.0    3.4  2  PF13304.1  AAA domain
     0.0089   16.4   0.5        6.4    7.1   0.0    2.9  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.014   14.5   0.2       0.37    9.8   0.0    2.3  2  PF03193.11 Protein of unknown function, DUF258
      0.014   14.9   0.0      0.066   12.7   0.0    2.0  2  PF01637.13 Archaeal ATPase
      0.019   15.1   1.4        2.6    8.2   0.0    2.9  2  PF13238.1  AAA domain
       0.02   13.8   1.2        1.4    7.8   0.0    3.1  2  PF06414.7  Zeta toxin
      0.042   13.7   0.1         11    5.8   0.0    2.8  2  PF01926.18 50S ribosome-binding GTPase
      0.049   13.3   0.4        3.6    7.2   0.2    2.7  2  PF00350.18 Dynamin family
      0.057   13.4   5.8        1.7    8.7   0.2    4.2  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.06   13.0   0.8       0.17   11.5   0.5    1.8  1  PF01935.12 Domain of unknown function DUF87
        0.1   12.1   0.5         17    4.9   0.1    3.0  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B


Domain annotation for each model (and alignments):
>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.8   5.9e-14   3.1e-11      99     249 ..      10     158 ..       4     191 .. 0.89
   2 !   89.3   7.4   4.7e-28   2.5e-25       7     273 ..     566     828 ..     551     830 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 5.9e-14
  PF00664.18  99 ellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtfl 249
                 +l s+ tnD+ + + +l+     +f  la++ + ++++ ++g  ++   + i+ l +l+++ la +++ l+ ++ k+++++  ++ E+ ++i t+ka  +ee +++r e  ++ a+ + i k ++  +l++ +++ s + +al ++f++  
  MMETSP0890-20130614|6851_1  10 RLYSMCTNDLARFDALLPFLHAPWFAVLAIIAVFFLIANIIGYAAAGTGVGIISLSVLIQVRLAFRFRALRARTAKKTDERIHLLDEICAAILTIKANSWEEEFYQRVELLRK-AEMRTILKSQLCKALNSGLYFCSVT-LALFFTFAVLY 158
                 688999*****************************************9999*********************************************************99999.*************************.*******9944 PP

  == domain 2    score: 89.3 bits;  conditional E-value: 4.7e-28
  PF00664.18   7 lailagvtalvfplllgrllds....vsdgnde.ersslyslailliavgvlivlllqgsfyllertgqrirkrlfrallrkilglfdsffdknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtfl.svisgelsvgtvfaflslglqlsg 273
                 + i        + ++l  l d     +s ++ + +r    ++ + ++a+++++v+  +++ +    +++r   +l+r+ +r+i+ ++  f+d ++ G++l+r+++Dv  ++++l+++l+ +fq  +++++++i++++  + l +++ ++ +++i +  + +k ++ l++  q++++++   +  ++ g+ +++afg eek ++   +al+   +++++ +i++++l+ f+ +   l + l + ++ ++     + +s+  + ++l++++ql+g
  MMETSP0890-20130614|6851_1 566 SFI--------IGQVLLLLSDAyllrWSTSSRKsQRKPQRLYVFAILASATVFVAITRAMAFY--TVAMRCAAALHRKCVRSIIFAPLWFHDGTPRGRILTRVSSDVGHVDELLPQALFDLFQLGFLMLSIIIIACVAVPILVCIIPIAGIVFIRLKIFTSKSMTALKRLDQSTRSPVVERFAATVDGLASIRAFGSEEKAINLMADALDLNGRSWFWWLISQRYLGFFLDSGCVLFLSLLVLLAFTFkATNINLISPELIALALLYAMQLAG 828
                 223........3333333333344443333333467777777777778888888888888887..89*****************************************************************************************************************************************************************998765553333333333334478888889999999999999887 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   6.5e-08   3.4e-05      34     105 ..     325     401 ..     303     420 .. 0.77
   2 !   55.0   0.1   1.6e-17   8.4e-15       4     118 .]     922    1047 ..     919    1047 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 6.5e-08
                 HHH.EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHT CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  34 klr.igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..........srvstLSgGqkqrvalArall 105
                     i+y +q+p l+   t+r+n++++      +++++++l ++ l  +l+           +r+ tLSgGqk rv+lAr+++
  MMETSP0890-20130614|6851_1 325 VYTrIAYAAQSPWLV-TGTLRSNIAAS-----NEQTLDKALYACDLVTDLQVlpggkdcllgDRGVTLSGGQKARVSLARVIA 401
                 3335***********.********877.....4556777777777776666667788899999*****************876 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 1.6e-17
                  HHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--..............----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22    4 lklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk..............srvstLSgGqkqrvalArallkkpklllLDEPtn 118 
                  + +++++   ++g+i +d  + d ++ +l++lr  i+ ipqdp  f   tv  n+d+  e+  +++ + +vl++vgl+ ++++              ++ s++S+G++q ++lArall ++k+  LDE+t+
  MMETSP0890-20130614|6851_1  922 ALAIARLNIISNGKILLD--GLDTSKVPLKRLRkqIAIIPQDPIIF-TGTVHFNIDPLSEK--SKADALRVLQAVGLSTERSDtyhnssnildrlvdESSSNISQGERQLICLARALLLERKICTLDEATA 1047
                  556777777789******..567899999*****************.********999888..89**************87778*********************************************96 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.2   4.1e-08   2.2e-05     121     210 ..     264     467 ..     258     475 .. 0.71
   2 !   11.2   4.1   0.00027      0.14     119     209 ..     980    1089 ..     895    1095 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.1e-08
                 HHHHHHHHCTT--TT..........................................................................................................G-----HHHHHHHHHHH..HHTSS--S.EEEESSTTTT--HHHHHHHHH....HHHHH-BT.BEEEEE-S-HHHHTT-SEEE- CS
                 xxxxxxxxxxxxxxx..........................................................................................................xxxxxxxxxxxxxxxxx..xxxxxxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14 121 kevaellesagiske..........................................................................................................lLSgGektLvalaLlfA..iqkvkpap.lyllDeidaaLDeknvskvae....llkekskn.aQfivislreemlekadklvg 210
                 ++v+  l+++ + k+                                                                                                          +LSgG+k+ v+la ++A  + + + +p l++lD++ aaLD++  + v++    +l+++++  + ++  ++ +++ + adklv 
  MMETSP0890-20130614|6851_1 264 NDVEMPLRDSSFGKNkivlkeinlqikpgdficicgpvgagktslilgmlgeldlvhgnldvytriayaaqspwlvtgtlrsniaasneqtldkalyacdlvtdlqvlpggkdcllgdrgvTLSGGQKARVSLARVIAavLDQNDYEPiLVVLDDVFAALDNRVANTVVQrtisILRNARQGmVSVVLATHAKSLAKIADKLVI 467
                 55555555555555555555555555577777778888888888888888888888888888888888888888888888888888888888888888888888888888888888888889************999988777777773578*********9876665541111555555542445556777777777788775 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00027
                  -HHHHHHHHHCTT--TT.....................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-..BTBEEEEE-S-HHHHTT-SEEE CS
                  xxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  119 tkkevaellesagiske.....................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeks..knaQfivislreemlekadklv 209 
                  +k++  ++l+ +g+s e                     ++S Ge++L+ la  + ++    + ++ lDe  a  D +  +++ e lk+++  ++a  ++i++r  ++e+ad+++
  MMETSP0890-20130614|6851_1  980 SKADALRVLQAVGLSTErsdtyhnssnildrlvdesssNISQGERQLICLARALLLE----RKICTLDEATASTDSQTDQRIQEQLKKATflNEATTFIIAHRLATIEHADNIL 1089
                  334444444444444447777777777777777777779********9988665444....4599**********************77644789***************9876 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     1e-06   0.00053      19      85 ..     372     432 ..     358     436 .. 0.84
   2 ?    3.3   0.1      0.13        70      65      84 ..    1038    1057 ..     999    1063 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1e-06
   PF13558.1  19 edgkekelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasll 85 
                 ++gk+  l +r  tlSGG+k   + ++la  +aa+++++   + ++ lv+LD+ F+ lD++ +++++
  MMETSP0890-20130614|6851_1 372 PGGKDCLLGDRGVTLSGGQK---ARVSLARVIAAVLDQN---DYEPILVVLDDVFAALDNRVANTVV 432
                 56666777788889******...8888888999****95...899***************9988876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.13
   PF13558.1   65 rlvfLDEAFsklDeeniasl 84  
                  +++ LDEA+++ D+++ +++
  MMETSP0890-20130614|6851_1 1038 KICTLDEATASTDSQTDQRI 1057
                  5889*********9987765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.8   0.00022      0.12      29     188 ..     288     454 ..     259     458 .. 0.52
   2 !   11.5   0.0   0.00024      0.13      29      54 ..     901     926 ..     875     948 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00022
   PF13481.1  29 llprgsltllaGapgtGKStlalqlaaava...tGepflg....pvvpepgrVlylsaEdseaelr....rrlsailaalddpenlllvs....lagv.gslrltaddrrdalltadlerllaaieeleg..pdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavllvhH 188
                  + +g ++++ G+ g+GK++l+l +++ +         l+     +   ++   +l +   ++ ++    + l ++l a+d   +l ++          g++ +t+   ++++    l+r++aa+ + ++  p lvv+D + ++++ +  +n+ v++ i+ l++ a++  ++v+l  H
  MMETSP0890-20130614|6851_1 288 QIKPGDFICICGPVGAGKTSLILGMLGELDlvhG---NLDvytrIA--YAAQSPWLVTGTLRSNIAasneQTLDKALYACDLVTDLQVLPggkdC--LlGDRGVTLS--GGQKARVSLARVIAAVLDQNDyePILVVLDDVFAALD-NRVANTVVQRTISILRN-ARQGMVSVVLATH 454
                 4679**********************99985531...233332311..22222222222222222211113333333444444444444411110..2233333333..3333333344444444444556688888886655555.33344555777777777.4556666777776 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00024
   PF13481.1  29 llprgsltllaGapgtGKStlalqla 54 
                  +p+gs + + G++g+GKS++al++a
  MMETSP0890-20130614|6851_1 901 SFPAGSTVGVCGRTGSGKSSFALAIA 926
                 4699********************98 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.5e-05     0.045       5     123 ..     293     453 ..     289     461 .. 0.72
   2 !    9.1   0.0    0.0023       1.2       9      69 ..     910    1011 ..     904    1093 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.5e-05
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaae..karvvfveapast.spkellqkllsalglpakg...................................rltteellealqealrrrrtrlliiDEaqr.L.....seealeelrslldd.etgvklvlvG 123
                  +++++G+ G+GKT l+  ++ +ld +    +    + + + a++++    +l++++++  ++ +++                                   r + +++++a++++ + +   l+++D++   L     ++ +  +++ l ++ +  v++vl+ 
  MMETSP0890-20130614|6851_1 293 DFICICGPVGAGKTSLILGMLGELDLVHG--NldVYTRIAYAAQSPWlVTGTLRSNIAASNEQTLDKalyacdlvtdlqvlpggkdcllgdrgvtlsggqkaRVSLARVIAAVLDQNDYEPI-LVVLDDVFAaLdnrvaNTVVQRTISILRNArQGMVSVVLAT 453
                 589******************99987644..3446666677777777555556777777777777778888888888888888899999999999998766666666666666666666666.99999998877554433666666666666678888888875 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0023
   PF13401.1    9 vtGesGvGKTtllrrlarqldeeaeaae...............................karvvfveapast.spkellqkllsalglpakg.............r 69  
                  v+G +G+GK+ ++  +ar +    ++ +                                + +v++++ + + ++k+ + ++l+a+gl++++              
  MMETSP0890-20130614|6851_1  910 VCGRTGSGKSSFALAIARLN----IISNgkilldgldtskvplkrlrkqiaiipqdpiiFTGTVHFNIDPLSeKSKADALRVLQAVGLSTERsdtyhnssnildrL 1011
                  8*****************86....3333468899999999999999999999997666666666888888886777779999999999998866644333333330 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0058       3.1       2      15 ..     295     308 ..     294     341 .. 0.92
   2 !   12.9   0.0   0.00024      0.13       2      40 ..     908     942 ..     907    1038 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0058
                 E--B--TT---HHH CS
   PF13207.1   2 iaitGppGsGKsTl 15 
                 i+i+Gp G+GK++l
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSL 308
                 9***********97 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00024
                 E--B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS- CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlslddllreeglk 40 
                 ++++G +GsGKs++a ++a+ l+  ++s + + + +gl+
  MMETSP0890-20130614|6851_1 908 VGVCGRTGSGKSSFALAIAR-LN--IISNGKI-LLDGLD 942
                 89****************99.35..6677773.344443 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.7e-05     0.046       2      43 ..     295     336 ..     294     407 .. 0.75
   2 ?    4.9   0.0     0.038        20       4      20 ..     910     926 ..     908     945 .. 0.88
   3 ?   -0.5   0.1       1.7   9.1e+02      15      83 ..    1029    1099 ..    1028    1106 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.7e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfgtdqq 43 
                 + ++G+ G+GK+ l+ ++l +l+ v+ + d++ +  ++ +++
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSLILGMLGELDLVHGNLDVYTRIAYAAQSP 336
                 678***************************976644433222 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.038
   PF13671.1   4 lvGlpGsGKstlaerll 20 
                 ++G  GsGKs +a +++
  MMETSP0890-20130614|6851_1 910 VCGRTGSGKSSFALAIA 926
                 79**********98776 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.7
   PF13671.1   15 laerllkklgyvrlsqdtlrkrlfgtdqqskt..dytrvlkrlyqilnklarkalsagrsvivdatnlsre 83  
                  la++ll ++++++l++ t+++    +++ +++  + t +++++  i++ ++++   a +  i+d++  +++
  MMETSP0890-20130614|6851_1 1029 LARALLLERKICTLDEATASTDSQTDQRIQEQlkKATFLNEATTFIIAHRLATIEHADNILILDNGIIREH 1099
                  67788878888889999988877653333322112222444455566667767777777788899888776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   8.1e-06    0.0042      22     145 ..     292     424 ..     282     450 .. 0.66
   2 ?    3.9   0.5      0.11        56      25      54 ..     907     936 ..     889    1093 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8.1e-06
   PF13191.1  22 gsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa..................lrellrqlltelaaelggwreallaalgalipelegiiglq.alvalldaalartrrpklvlvlDDlqwadr 145
                 g  ++++ Gp G GK+sL+        l +l   +g+ d ++r ++y+a   +                   ++l+++ l    + l g ++ ll + g     l+g +    +l++++ a l+++   ++++vlDD+  a +
  MMETSP0890-20130614|6851_1 292 GD-FICICGPVGAGKTSLILG-----MLGELDLVHGNLDVYTR-IAYAAQSPWlvtgtlrsniaasneqtlDKALYACDLVTDLQVLPGGKDCLLGDRGV---TLSGGQKARvSLARVIAAVLDQNDYEPILVVLDDVFAALD 424
                 44.89**************99.....999*******9998888.57777777777455444444444445444444444444444444444444444444...555555554488888888888888555*******544444 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.11
   PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrf 54 
                  + v G  G+GKSs + ++a+  + +++  
  MMETSP0890-20130614|6851_1 907 TVGVCGRTGSGKSSFALAIARLNIISNGKI 936
                 67799**********999776655555444 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.089        47       5      25 ..     296     316 ..     294     329 .. 0.82
   2 ?   -0.7   0.0       1.1   5.8e+02     237     285 ..     404     454 ..     394     470 .. 0.81
   3 !   13.2   0.0   6.5e-05     0.034       4     125 ..     908    1037 ..     905    1093 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.089
   PF12846.2   5 lilGppGsGKSvllkklvlql 25 
                 +i+Gp G+GK++l+  ++ +l
  MMETSP0890-20130614|6851_1 296 CICGPVGAGKTSLILGMLGEL 316
                 79***********98887655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.1
   PF12846.2 237 frapkdlrdkllviDEahrllgs...pegadfldelaregRkfgvgiilatQ 285
                 ++++++++  l+v+D +  +l++   ++ +++  +++r +R   v+++lat+
  MMETSP0890-20130614|6851_1 404 LDQNDYEP-ILVVLDDVFAALDNrvaNTVVQRTISILRNARQGMVSVVLATH 454
                 45555555.88888888888887786778999*******************9 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 6.5e-05
   PF12846.2    4 tlilGppGsGKSvllkklvlqllargprvvii..Dp.ggeysglaral...ggqvidlgegkgislNPfdigpteagaekleaea.......dphsreldlllalletdselrnrpledeeeaalsralrelyee 125 
                  + ++G +GsGKS+++ ++++ ++  +++++    D+ +   ++l +++   +++ i ++++    ++P+     +a+a + +++        d + +  ++l +l++    ++++++++ e++++  a   l e+
  MMETSP0890-20130614|6851_1  908 VGVCGRTGSGKSSFALAIARLNIISNGKILLDglDTsKVPLKRLRKQIaiiPQDPIIFTGTVHFNIDPLSEKS-KADALRVLQAVglstersDTYHNSSNILDRLVD----ESSSNISQGERQLICLARALLLER 1037
                  5699**********************99986544665555555555552222344444444444477777333.333333333335666665666666666666666....666666666666644444433333 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.021        11      48      66 ..     293     311 ..     274     330 .. 0.85
   2 !   10.0   0.0    0.0007      0.37      10      73 ..     869     931 ..     863     943 .. 0.83
   3 ?   -2.3   0.0       4.4   2.3e+03      21      52 ..    1044    1075 ..    1033    1076 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.021
  PF01695.12  48 enlvllGpsGvGKthlAia 66 
                 + ++++Gp G+GKt l  +
  MMETSP0890-20130614|6851_1 293 DFICICGPVGAGKTSLILG 311
                 5699**********98665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0007
  PF01695.12  10 laklpakktledfdfdaargldkrlikelaslsfveqaenlvllGpsGvGKthlAialgveavr 73 
                  ++ p+++tle +d +     d   + + +s sf +  + + ++G +G GK+ +A a++   + 
  MMETSP0890-20130614|6851_1 869 DSEWPQSATLEFVDLRVRYRTDLPDVLKGISISFPA-GSTVGVCGRTGSGKSSFALAIARLNII 931
                 677888899999999999999999999999999976.88999****************986655 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 4.4
  PF01695.12   21 dfdfdaargldkrlikelaslsfveqaenlvl 52  
                  +   +   + d+r  ++l++  f+++a  +++
  MMETSP0890-20130614|6851_1 1044 EATASTDSQTDQRIQEQLKKATFLNEATTFII 1075
                  55556667788999999999999999888876 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2    0.0018      0.93      14      36 ..     284     309 ..     274     313 .. 0.76
   2 !    7.3   0.1     0.009       4.7      13      39 ..     898     925 ..     894     928 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0018
   PF13476.1  14 eidF..skg.ltlItGpNGsGKTTil 36 
                 ei++  ++g  ++I+Gp G+GKT+++
  MMETSP0890-20130614|6851_1 284 EINLqiKPGdFICICGPVGAGKTSLI 309
                 344444554499************97 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.009
   PF13476.1  13 qeidFskg.ltlItGpNGsGKTTildAi 39 
                   i+F  g  + ++G +GsGK+++  Ai
  MMETSP0890-20130614|6851_1 898 ISISFPAGsTVGVCGRTGSGKSSFALAI 925
                 5677755525579***********9888 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.7e-05      0.02       7      40 ..     284     317 ..     280     325 .. 0.87
   2 ?   -0.1   0.0       1.1   5.9e+02      13      36 ..     903     926 ..     896     934 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.7e-05
  PF02367.12   7 rlaellkagdvvlLsGdlGaGKTtlvkglakglg 40 
                 ++  ++k+gd +++ G++GaGKT+l+ g++ +l+
  MMETSP0890-20130614|6851_1 284 EINLQIKPGDFICICGPVGAGKTSLILGMLGELD 317
                 5667899*********************998886 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.1
  PF02367.12  13 kagdvvlLsGdlGaGKTtlvkgla 36 
                  ag+ v   G  G+GK +++ ++a
  MMETSP0890-20130614|6851_1 903 PAGSTVGVCGRTGSGKSSFALAIA 926
                 678889999**********98876 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00017     0.087      20     116 ..     293     425 ..     278     465 .. 0.76
   2 ?    2.0   0.1      0.13        69      21      42 ..     907     928 ..     893     934 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00017
                 EEEEEE-------HHHHHHHTS-SS.-----SEEEEEE-----SSHHHHHHHHHHHXXXXXXX................................-TTSS-HH.HHHHHHHHTTT-...SEEEEEEEE--HHHH CS
  PF00931.17  20 kvvglvGmgGvGKttlakqvykdes.veshFdvvawvkvsktakefdlqkdilkeLgkededv................................sveknese.lkrklkelLkrk...rfLlvLDDVweeeew 116
                 +++ + G  G GKt l+   + +   v+++ dv+  +    ++++  ++ ++  +++ ++e++                                s  ++ ++ l+r +  +L ++    +L+vLDDV    + 
  MMETSP0890-20130614|6851_1 293 DFICICGPVGAGKTSLILGMLGELDlVHGNLDVYTRIAYAAQSPW-LVTGTLRSNIAASNEQTldkalyacdlvtdlqvlpggkdcllgdrgvtlSGGQKARVsLARVIAAVLDQNdyePILVVLDDVFAALDN 425
                 6899*****************88888*********9999999998.3455566666666555566669**************************9666666665*********99977778*******876533 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.13
                 EEEEE-------HHHHHHHTS- CS
  PF00931.17  21 vvglvGmgGvGKttlakqvykd 42 
                  vg+ G+ G+GK+  a ++ + 
  MMETSP0890-20130614|6851_1 907 TVGVCGRTGSGKSSFALAIARL 928
                 699***********99988765 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.025        13      19      40 ..     289     309 ..     282     313 .. 0.80
   2 !    8.8   0.2     0.002         1      19      45 ..     902     927 ..     894     934 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.025
   PF13555.1  19 idpkgkntlltGasGsGKSTll 40 
                 i+p g+   + G+ G+GK++l+
  MMETSP0890-20130614|6851_1 289 IKP-GDFICICGPVGAGKTSLI 309
                 554.45899***********98 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.002
   PF13555.1  19 idpkgkntlltGasGsGKSTllDAiqt 45 
                 +  +g+++ + G++GsGKS++  Ai+ 
  MMETSP0890-20130614|6851_1 902 FP-AGSTVGVCGRTGSGKSSFALAIAR 927
                 53.5678899**********9877765 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.013       6.9       1      21 [.     294     314 ..     294     346 .. 0.84
   2 ?    5.5   0.8     0.024        12       4      29 ..     910     933 ..     908    1061 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.013
   PF13304.1   1 lnviiGpNgsGKSnlLkaldf 21 
                 + +i+Gp g+GK++l+  + +
  MMETSP0890-20130614|6851_1 294 FICICGPVGAGKTSLILGMLG 314
                 689************988765 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.024
   PF13304.1   4 iiGpNgsGKSnlLkaldflfrdelvl 29 
                 ++G+ gsGKS++  a++ l  +  ++
  MMETSP0890-20130614|6851_1 910 VCGRTGSGKSSFALAIARL--NIISN 933
                 6789999999999999887..22222 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.022        12       2      21 ..     295     314 ..     295     327 .. 0.88
   2 ?    7.1   0.0     0.012       6.4       2      20 ..     908     926 ..     907     954 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.022
   PF08477.8   2 vvvvGdkgvGKssllsqlvg 21 
                 + ++G  g+GK+sl+  ++g
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSLILGMLG 314
                 689************87776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.012
   PF08477.8   2 vvvvGdkgvGKssllsqlv 20 
                 v v+G +g+GKss+  +++
  MMETSP0890-20130614|6851_1 908 VGVCGRTGSGKSSFALAIA 926
                 78***********976665 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00071      0.37      22      62 ..     278     319 ..     257     328 .. 0.80
   2 ?    2.0   0.0      0.17        91      36      55 ..     906     925 ..     887     942 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00071
                 HHTT-HHHHHHCTT.SBEEEE-------HHHHHHH------- CS
  PF03193.11  22 tkegleelaellkd.ktsvlvGqSGvGKSsLinallpeldlk 62 
                 +k  l+e++ ++k  ++++++G+ G+GK+sLi  +l+eldl 
  MMETSP0890-20130614|6851_1 278 NKIVLKEINLQIKPgDFICICGPVGAGKTSLILGMLGELDLV 319
                 56678889999998899***************9888887765 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.17
                 SBEEEE-------HHHHHHH CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinal 55 
                 +t+ ++G++G GKSs+  a+
  MMETSP0890-20130614|6851_1 906 STVGVCGRTGSGKSSFALAI 925
                 67789**********87655 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013     0.066      10     150 ..     284     441 ..     281     463 .. 0.67
   2 ?   -2.2   0.0       4.5   2.3e+03      25      41 ..     910     926 ..     906     946 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00013
                 HHHHHHHH..-SEEEEE--TT---HHHHHHHHHH-...---.....HHHHH------HHHHHHHH....HHHS-SHHHH...............HHHHT....-----TS-GG.G--HHHHHHHHHH----..EEEEEETGGGGG-------HHHHHHHHHHHH CS
  PF01637.13  10 eleeilerepnsiiviyGprrsGKTaLlkeileel.kekgk.....rvvyyinlreefeskleefieeeeekkklakal...............gialpkaeleeilkkksklvflaleellealkkkgkk..iiiiiDElqklilglngakslvkeLlnlids 150
                 e++  ++  p ++i i Gp + GKT+L+  +l el + +g      r  y  +     + +l+  i + +++++l+kal               ++ l  +++ ++++   +++  +l+++++a+ +++    i++++D+++ +    + a+ +v+   +++ +
  MMETSP0890-20130614|6851_1 284 EINLQIK--PGDFICICGPVGAGKTSLILGMLGELdLVHGNldvytRIAYAAQSPWLVTGTLRSNI-AASNEQTLDKALyacdlvtdlqvlpggKDCLLGDRGVTLSG--GQKARVSLARVIAAVLDQNDYepILVVLDDVFAAL-DNRVANTVVQRTISILRN 441
                 5554444..4699*********************95445555444444455554444444444443.55566668888899999999999999877777777766555..4445568888888877777666889999***9998.445556666555555555 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.5
                 EE--TT---HHHHHHHH CS
  PF01637.13  25 iyGprrsGKTaLlkeil 41 
                 + G+ +sGK+++   i+
  MMETSP0890-20130614|6851_1 910 VCGRTGSGKSSFALAIA 926
                 78********9876655 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.5     0.072        38       1      14 [.     295     308 ..     295     310 .. 0.94
   2 ?    8.2   0.0    0.0049       2.6       1      30 [.     908     941 ..     908     990 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.072
   PF13238.1   1 IlitGtpGvGKtTl 14 
                 I+i+G+ G+GKt+l
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSL 308
                 9***********97 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0049
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl....gdvlrdla 30 
                 ++++G +G+GK++ a ++a+ +    g++l d +
  MMETSP0890-20130614|6851_1 908 VGVCGRTGSGKSSFALAIARLNiisnGKILLDGL 941
                 689***************9986566655555544 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0027       1.4      18      44 ..     294     322 ..     287     327 .. 0.85
   2 ?    2.0   0.6      0.16        83      21      38 ..     910     927 ..     906    1081 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0027
   PF06414.7  18 avllgGqpGAGKtslaellleela..agn 44 
                 ++ ++G+ GAGKtsl+  +l+el+  +gn
  MMETSP0890-20130614|6851_1 294 FICICGPVGAGKTSLILGMLGELDlvHGN 322
                 57899************999999766555 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.16
   PF06414.7  21 lgGqpGAGKtslaellle 38 
                 ++G +G+GK+s a ++ +
  MMETSP0890-20130614|6851_1 910 VCGRTGSGKSSFALAIAR 927
                 678888888888777665 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.043        23       2      34 ..     295     327 ..     294     451 .. 0.57
   2 ?    5.8   0.0     0.022        11       2      21 ..     908     927 ..     907     964 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.043
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-S CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtT 34 
                 ++i G   +GK++Li  ++ge     ++    T
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSLILGMLGELDLVHGNLDVYT 327
                 89*************999875333333333333 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.022
                 EEEE--TT---HHHHHHHHC CS
  PF01926.18   2 vaivGrpNvGKStLinaLtg 21 
                 v++ Gr+ +GKS++  a+ +
  MMETSP0890-20130614|6851_1 908 VGVCGRTGSGKSSFALAIAR 927
                 89************988874 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12        65       1      21 [.     295     315 ..     295     332 .. 0.84
   2 ?    7.2   0.2    0.0068       3.6       1      27 [.     908     934 ..     908     938 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.12
                 EEEE--TT---HHHHHHH--- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlge 21 
                 i+++G + aGK+Sl+  +lge
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSLILGMLGE 315
                 789************999887 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0068
                 EEEE--TT---HHHHHHH--------- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprg 27 
                 + v+G   +GKSS++ a+   +i  +g
  MMETSP0890-20130614|6851_1 908 VGVCGRTGSGKSSFALAIARLNIISNG 934
                 68*************999988876655 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0033       1.7       1     110 [.     295     454 ..     295     473 .. 0.57
   2 ?    2.8   0.6      0.21   1.1e+02       3      21 ..     910     928 ..     908    1090 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0033
                 EEEE-------HHHHHHHHHHC.....THE......................EEEEECCSSSSS.........................................T-HHHHHHHHHHHHH.HHHTS.-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-S CS
  PF00004.24   1 vllyGppGtGKTllakavakel.....gve......................fleisgsellsk.........................................yvgesekkirelfke.akeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatn 110
                 ++++Gp G GKT+l+  +  el     +                                                                              ++++   ++ ++ + + ++  +p+ +++D++ a   +r   ++++ +r+++ L ++ +g+ +      v++at+
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSLILGMLGELdlvhgN-LdvytriayaaqspwlvtgtlrsN----------IaasneqtldkalyacdlvtdlqvlpggkdcllgdrgvtlsgGQKARV-SLARVIAAvLDQNDyEPILVVLDDVFAALDNR--VANTVVQRTISILRNARQGMVS------VVLATH 454
                 5899****************98333331.023333433444444444433332..........033333344447777777777777888888888888877654222222.23333333133444778999999999988888..5555555555555555555444......444443 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.21
                 EE-------HHHHHHHHHH CS
  PF00004.24   3 lyGppGtGKTllakavake 21 
                 ++G  G GK+++a a+a+ 
  MMETSP0890-20130614|6851_1 910 VCGRTGSGKSSFALAIARL 928
                 5788888888888888875 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   0.00033      0.17      26     122 ..     908    1001 ..     905    1100 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00033
  PF01935.12   26 lAilgsTGsGKSntvavLleellekkgatili..lDpHGEYgkalekllsekvkvitpspeakdtelkinpwsldpeelldlleelkddepaaeaqrsv 122 
                  +++ g+TGsGKS ++  + +  +   +++il+  l  +   + ++  +l++++ +i ++p     ++++n++ l+ +  +d l +l+    ++e+++ +
  MMETSP0890-20130614|6851_1  908 VGVCGRTGSGKSSFALAIARLNI-ISNGKILLdgL--DTSKVPLK--RLRKQIAIIPQDPIIFTGTVHFNIDPLSEKSKADALRVLQAVGLSTERSDTY 1001
                  79****************99999.77778776222..22233333..6677777777776667777777777777777666666666665555554444 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.062        33       3      21 ..     295     313 ..     294     318 .. 0.84
   2 ?    4.9   0.1     0.033        17       2      22 ..     907     927 ..     906     973 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.062
                 EEEE-------HHHHHHHH CS
   PF03205.9   3 vavvGpkdsGKTtlieklv 21 
                 + ++Gp + GKT+li  ++
  MMETSP0890-20130614|6851_1 295 ICICGPVGAGKTSLILGML 313
                 679***********97665 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.033
                 EEEEE-------HHHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvn 22 
                 +v v+G ++sGK++++  +++
  MMETSP0890-20130614|6851_1 907 TVGVCGRTGSGKSSFALAIAR 927
                 589***********9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.85u 0.37s 00:00:02.22 Elapsed: 00:00:01.29
# Mc/sec: 2119.57
//
Query:       MMETSP0890-20130614|6855_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-37  127.5   0.6    8.7e-37  126.5   0.0    1.8  2  PF00069.20 Protein kinase domain
      2e-24   85.9   0.0    4.5e-24   84.8   0.0    1.5  1  PF07714.12 Protein tyrosine kinase
    1.5e-07   30.8   5.7    1.5e-07   30.8   3.9    3.0  3  PF13414.1  TPR repeat
    0.00022   21.0   6.8       0.13   12.4   0.1    3.1  3  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
        0.4   10.2   0.0        0.4   10.2   0.0    3.0  3  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0   3.2e-40   8.7e-37       5     224 ..     178     401 ..     175     437 .. 0.85
   2 ?   -4.2   1.1       2.5   6.7e+03     219     240 ..     484     504 ..     460     526 .. 0.46

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 3.2e-40
                 EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E.EE------EEE.......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGG CS
  PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel.kiaDFGlakkl.......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedep 224
                 + lG+G+f++  k+++     + A Ki++ ++   +k++ + +E+k l+kl+H++iv+++++fe+  d++++v+e++ gg+l   +    +   e++ +++ + + +l y+H++gi+HrD+K++Ni+ld++ ++ k+aDFGl+k++        + s+++++  gt  Ym+P  ++ + + +++ D+WslG++++el  +  + ++++  + ++l   + +++   d  
  MMETSP0890-20130614|6855_1 178 SLLGEGAFARTHKVIDCVGI-IRAAKIIDLKTLGLTKDDVQ-LEAKTLAKLEHEFIVRYVASFEQpGDKFCIVMEFLGGGSLDGQVG--LEHCPETLSEWLGHCAAALMYIHERGIVHRDVKSSNIILDESRQTaKLADFGLSKVVqssskmsARGSSRTRSTSGTLLYMSPQAVN-GFKPSATDDMWSLGCTFVELGARYSLHDKSRGIKGMSLSLDTVNRNRIIDDA 401
                 679*******9999998775.89*********999998765.5*********************999****************6665..3345778999******************************666666*********99***99988888999****************.999*****************98888877776666666555555555555544 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 2.5
                 S--GGGGCSHHHHHHHHHHHHH CS
  PF00069.20 219 leedepkssskseelkdlikkl 240
                  ++de+ + + + e+k+l+k+ 
  MMETSP0890-20130614|6855_1 484 RKHDEEVK-RIEMEAKKLLKEK 504
                 22222222.2224444444433 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   1.7e-27   4.5e-24       6     199 ..     179     370 ..     175     397 .. 0.85

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 1.7e-27
                 EE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEESTTTSCE.....EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHH CS
  PF07714.12   6 klGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardiekddyy.....kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                  lGeGaf++ ++ +         +  a K+++ ++   +k++++ eak++ kl+h+ iv++++ +   +++++iv+e++ gG+L+  +  +     + ++l ++  + a ++ y++++ +vHrd+ + N++l+e++ + k++DfGL++ +++++++     ++++++   + +m+p +++  k + + D+Ws G++  E+ 
  MMETSP0890-20130614|6855_1 179 LLGEGAFARTHKVIDC-----VGIIRAAKIIDLKTLGLTKDDVQLEAKTLAKLEHEFIVRYVASFEqPGDKFCIVMEFLGGGSLDGQVGLE----HCPETLSEWLGHCAAALMYIHERGIVHRDVKSSNIILDESRqTAKLADFGLSKVVQSSSKMsargsSRTRSTSGTLLYMSPQAVNGFKPSATDDMWSLGCTFVELG 370
                 5788888877776655.....45566777776666677788999*********************967778**************988776....7889999999****************************97769************8888884444344455557789**************************985 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   0.5         5   1.4e+04      16      26 ..     521     531 ..     517     535 .. 0.50
   2 !    4.6   0.0    0.0084        23       5      68 ..     580     643 ..     577     644 .. 0.80
   3 !   30.8   3.9   5.5e-11   1.5e-07       4      61 ..     648     705 ..     645     706 .] 0.96

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 5
   PF13414.1  16 egdydeAieay 26 
                 ++++++A ++ 
  MMETSP0890-20130614|6855_1 521 QREHEKAAAEA 531
                 45555555443 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0084
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                 +l++++++l  e+++de + +    ++ d n+  +++  ++a++      +e   ++++Aleld
  MMETSP0890-20130614|6855_1 580 ELYQRAMKLKAECKWDEVLSLMCAVVAQDDNDSRAWSLVGHALIVTKASVDEQKIAIDRALELD 643
                 7899999999999999999999999999*************99987533344455667777665 PP

  == domain 3    score: 30.8 bits;  conditional E-value: 5.5e-11
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledy 61 
                 +a+  lG++l++e+dyd+ +++++ A+eld+n+a +y+ l++++++  k+y++A ++y
  MMETSP0890-20130614|6855_1 648 LAHALLGEQLYYEKDYDGCERELRLAIELDKNCAFAYNLLGHLLQNVHKKYDQAEQMY 705
                 78999*************************************************9988 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5   1.4e+04       1       8 [.     581     588 ..     581     589 .. 0.86
   2 !   12.4   0.1   4.6e-05      0.13       3      33 ..     637     667 ..     635     668 .. 0.91
   3 !   11.5   0.2   8.7e-05      0.24       5      34 .]     673     703 ..     669     703 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 5
   PF13431.1   1 lyekalel 8  
                 ly++a++l
  MMETSP0890-20130614|6855_1 581 LYQRAMKL 588
                 79***987 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.6e-05
   PF13431.1   3 ekaleldPnnadaynnLAelllnnGdleeAe 33 
                  +aleld nn  a+  L+e l+  +d++ +e
  MMETSP0890-20130614|6855_1 637 DRALELDTNNGLAHALLGEQLYYEKDYDGCE 667
                 79*******************9999999886 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 8.7e-05
   PF13431.1   5 aleldPnnadaynnLAelllnn.GdleeAeq 34 
                 a+eld+n a ayn L+ ll+n  +++++Aeq
  MMETSP0890-20130614|6855_1 673 AIELDKNCAFAYNLLGHLLQNVhKKYDQAEQ 703
                 9*******************97258****98 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.9      0.74     2e+03     127     154 ..     121     147 ..      93     163 .. 0.56
   2 ?   10.2   0.0   0.00015       0.4     149     185 ..     271     307 ..     249     318 .. 0.75
   3 ?    0.0   3.1      0.19   5.1e+02      85     147 ..     504     563 ..     431     600 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHHHCTHHHHHHHHHHHHH CS
  PF01636.18 127 rllesataalvasellelleeleervla 154
                 r+l++a ++++a e+++++ee++e+ ++
  MMETSP0890-20130614|6855_1 121 RRLAEA-NRRLAEEQQRRREEIAEEQRR 147
                 233333.233333333355555553222 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE.TTTT CS
  PF01636.18 149 eervlaalaallpgaeppvllHgDlhpgNllvd.pddg 185
                  e +l ++aa+l    +++++H+D ++ N+++d ++++
  MMETSP0890-20130614|6855_1 271 SE-WLGHCAAALMYIHERGIVHRDVKSSNIILDeSRQT 307
                 33.777777777778899***************54444 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.19
                 CSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHH.HHHHHCTHHHHHH CS
  PF01636.18  85 klnarqlpallealaellaalhqadpaadpladflapyltllrllesata.alvasellellee 147
                 k++ + ++++ e+ a+++++   a +a+ + a+ ++++++ +r++e++++ ++ a+e+    + 
  MMETSP0890-20130614|6855_1 504 KEQVELRRRQEEEKARAQREHEKA-AAEARAARDRERDAEIARKREREQRlRQEAAEQR---AV 563
                 444445555555555555554444.4444444444455666666666633222222222...22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1576  (0.115272); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:01.31
# Mc/sec: 1291.47
//
Query:       MMETSP0890-20130614|6854_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   62.9  16.9    3.1e-17   62.1  11.7    1.5  1  PF08701.6  GNL3L/Grn1 putative GTPase
    1.2e-13   50.9   0.2    1.8e-10   40.6   0.0    2.5  2  PF01926.18 50S ribosome-binding GTPase
    1.6e-05   24.6   8.4       0.19   11.4   0.0    3.5  3  PF00350.18 Dynamin family
    2.4e-05   23.5   0.3     0.0037   16.4   0.0    2.6  3  PF02421.13 Ferrous iron transport protein B
    6.3e-05   23.3   1.4     0.0054   17.1   0.0    3.2  3  PF08477.8  Miro-like protein
    9.5e-05   21.8   0.0       0.26   10.6   0.0    3.0  2  PF00009.22 Elongation factor Tu GTP binding domain
    0.00018   20.6   0.1    0.00093   18.3   0.0    2.2  2  PF09439.5  Signal recognition particle receptor beta subunit
    0.00034   19.7   0.1    0.00065   18.8   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
    0.00076   18.8   0.1       0.63    9.3   0.0    3.0  3  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0009   19.2   0.6      0.024   14.6   0.0    2.6  2  PF13401.1  AAA domain
     0.0013   19.0   1.4     0.0013   19.0   1.0    2.2  2  PF13191.1  AAA ATPase domain
     0.0075   15.8   0.0      0.024   14.2   0.0    1.9  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
  ------ inclusion threshold ------
      0.058   13.4   0.4          5    7.2   0.0    2.5  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.091   12.5   0.3      0.091   12.5   0.2    2.3  3  PF00239.16 Resolvase, N terminal domain
        1.8    8.7   0.0        1.8    8.7   0.0    3.3  4  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF08701.6  GNL3L/Grn1 putative GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1  11.7   3.4e-20   3.1e-17       1      69 [.      14      84 ..      14     100 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 3.4e-20
   PF08701.6  1 rkrykieKkvaehkrKkrKeakKnselk..skkkKdpgiPnsfPfKeeiLeeieekkekeeeekeekkeer 69
                +++ k++K+v+eh+rK++Keak++ +    skkk+dpgiPns+PfK+e+L+++e++k +++++k++  ++ 
  MMETSP0890-20130614|6854_1 14 KQKFKVQKRVKEHHRKQKKEAKRKGQQVgtSKKKRDPGIPNSWPFKAELLAQLEAAKATSSNKKKKSVQDI 84
                5899******************7766541146678*************************99999876655 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0028       2.6      67     114 .]     120     167 ..      52     167 .. 0.76
   2 !   40.6   0.0     2e-13   1.8e-10       2      66 ..     227     295 ..     226     352 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0028
                 HHHHHHHHHCTSSEEEEEEETTSHHHHHHHHHHHHHHTCCCEEEEEEC CS
  PF01926.18  67 gikkylekveradvlllvvdasavlkeadkellneleakkplilvlnk 114
                   k++ + +e +dv+l v+da+++l+ + +el +++   k+lil+lnk
  MMETSP0890-20130614|6854_1 120 YGKQIAQLIESTDVVLEVLDARDPLSSHSEELESQILPPKRLILILNK 167
                 33445666799*********9999999999999999899*******98 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 2e-13
                 EEEE--TT---HHHHHHHHCST.....CTEETS-TT-SSSESEEEEETTE.EEEEE---SSSHHHHHHHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek.....aakvsdypgtTrditenevkkek.iilvDtPGiiegasedkeie 66 
                 va+vG pN+GKS+L+ aL++++     ++ + +++g T+++  +ev  +k ++l+D PG+i+ ++++  ++
  MMETSP0890-20130614|6854_1 227 VAVVGFPNTGKSSLVQALVRRRssdhaVTGIDATAGSTTSV--REVRLDKkVTLIDSPGVIRIRPHEAVKH 295
                 89*****************6433444477788888999998..4444443479******997766666433 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   2.5    0.0064       5.8      89     167 ..      51     167 ..       2     169 .. 0.63
   2 !   11.4   0.0   0.00021      0.19       1      22 [.     227     248 ..     227     268 .. 0.89
   3 !    7.3   0.0    0.0038       3.5      99     117 ..     272     290 ..     264     305 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0064
                 S........................................-EEEEEEETTS-SEEEEE------------HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH------EE-EEE- CS
  PF00350.18  89 k........................................villkilsllvkgltlvDtPGldsvnkrdqelveeyikkadiilavtdanhdlstsealflarevdpkgkrtivVltk 167
                                                           ++++ ++   k+  ++ +P ld+  k   + + ++i++ d++l v da ++ls s +++l++++ p ++ ++ +l+k
  MMETSP0890-20130614|6854_1  51 GipnswpfkaellaqleaakatssnkkkksvqdivsaaklrNETFEEKQNAPKENDMIVLPELDRSRKAYGKQIAQLIESTDVVLEVLDARDPLS-SHSEELESQILPPKRLIL-ILNK 167
                 0444444444444444444444444444444556676777744555555444555556688888888888899**********************.***********9866555.5554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00021
                 EEEE--TT---HHHHHHH---- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlged 22 
                 +avvG  ++GKSSl+ aL+ ++
  MMETSP0890-20130614|6854_1 227 VAVVGFPNTGKSSLVQALVRRR 248
                 79*****************987 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0038
                 TS-SEEEEE---------- CS
  PF00350.18  99 lvkgltlvDtPGldsvnkr 117
                 l+k++tl+D+PG+ ++ ++
  MMETSP0890-20130614|6854_1 272 LDKKVTLIDSPGVIRIRPH 290
                 6799*********996554 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.3   4.8e+03     139     159 ..      71      91 ..      60     109 .. 0.52
   2 ?    4.4   0.0     0.018        16      77     146 ..     129     199 ..     116     220 .. 0.81
   3 !   16.4   0.0     4e-06    0.0037       2      60 ..     226     287 ..     225     296 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.3
                 EEEBCCGTB--HHHHHHHHHH CS
  PF02421.13 139 vktvarkkkgieelleaiiev 159
                  + + +kkk ++++++a++  
  MMETSP0890-20130614|6854_1  71 ATSSNKKKKSVQDIVSAAKLR 91 
                 444445555555555555332 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.018
                 H--SEEEEEEEGGGH..HHHHHHHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEEEBCCGT CS
  PF02421.13  77 ekpdviinvvDasnl..ernLyLtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvktvarkk 146
                 e+ dv+++v+Da       +  L  q+l   ++++++ln+iD + +   +  l+ L++  g+ v+++ ar +
  MMETSP0890-20130614|6854_1 129 ESTDVVLEVLDARDPlsSHSEELESQILPP-KRLILILNKIDLIPQDIAQRWLHYLRKVRGFIVMPCAARPS 199
                 78899******9975224566788998875.68999********9999999999999999999999988754 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 4e-06
                 EEEEE--TT---HHHHHHH----TB......--------S--BB--EEETTEEEEEEE------S CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgakqk......vgNwpGvTVekkegklklkgkeveivDLPGiYsL 60 
                  va+vG pn+GK++l+ al   +++      +   +G T   +e +l   +k+v+++D PG+  +
  MMETSP0890-20130614|6854_1 226 AVAVVGFPNTGKSSLVQALVRRRSSdhavtgIDATAGSTTSVREVRL---DKKVTLIDSPGVIRI 287
                 69*****************9876541111112233344444444444...499********8766 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5      0.57   5.2e+02      14     103 ..      11      94 ..       3     110 .. 0.64
   2 ?    2.5   0.1       0.2   1.8e+02      63      95 ..     120     151 ..      78     169 .. 0.63
   3 !   17.1   0.0   5.9e-06    0.0054       2      61 ..     227     285 ..     226     328 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.57
   PF08477.8  14 sllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelr 103
                 + l+q ++ ++  +k     ++++   k  +v   +   + +d+g    + ++   ll +  a+  + ++++++s++++ +  a+l++  
  MMETSP0890-20130614|6854_1  11 TTLKQKFKVQKR-VKEHHRKQKKEAKRKGQQVGTSK---KKRDPGIPNSWPFK-AELLAQLEAAKATSSNKKKKSVQDIVSA-AKLRNET 94 
                 677777777776.33333333333333334444444...44888888888885.6678999999999999999999998766.6666554 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.2
   PF08477.8  63 lkkehelllkkadaillvydltdeesleevsel 95 
                   k++ +l++++d++l v+d +d+ s ++ +el
  MMETSP0890-20130614|6854_1 120 YGKQIAQLIESTDVVLEVLDARDPLSSHS-EEL 151
                 23344455***************998877.444 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 5.9e-06
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp..kkklpeeikgdtlavktlevdvdtellelwdlggre 61 
                 v+vvG +++GKssl+++lv++  +   ++    + g+t++v   ev+ d++   l d  g +
  MMETSP0890-20130614|6854_1 227 VAVVGFPNTGKSSLVQALVRRRSSdhAVTGIDATAGSTTSV--REVRLDKKV-TLIDSPGVI 285
                 79*****************9999944333344445555554..344444433.455666665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00028      0.26      83     140 ..     120     176 ..     116     217 .. 0.81
   2 !    7.4   0.0    0.0026       2.4       4      79 ..     225     283 ..     222     286 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00028
                 GHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHH CS
  PF00009.22  83 FskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaele 140
                 + k++++ ++ +D+++ v+da++   + +ee+  ++     ++i+++NKiD++ +++ 
  MMETSP0890-20130614|6854_1 120 YGKQIAQLIESTDVVLEVLDARDPLSSHSEELESQILP-PKRLILILNKIDLIPQDIA 176
                 67777777899********************9999985.457**********944433 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0026
                 EEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE--- CS
  PF00009.22   4 rnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPG 79 
                 + ++++g  + GK++l++al+ + +  +              +      g T ++  + l+     ++++liD+PG
  MMETSP0890-20130614|6854_1 225 LAVAVVGFPNTGKSSLVQALVRRRSSDHA------------VTGIDATAGSTTSVREVRLD-----KKVTLIDSPG 283
                 578999999************66644333............22233445666666666666.....7777777777 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   1.2e+03      40      70 ..      68      98 ..      61     110 .. 0.72
   2 !   18.3   0.0     1e-06   0.00093       5      65 ..     226     290 ..     222     311 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.3
                ETT-...-----EEEE----GGGGHHHHHHH CS
   PF09439.5 40 alkvksekgkkltliDfPGheklrqkllekl 70
                a+k +s+++kk+ + D+    klr++ +e+ 
  MMETSP0890-20130614|6854_1 68 AAKATSSNKKKKSVQDIVSAAKLRNETFEEK 98
                5556677777888888888889988888774 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1e-06
                 EEEEE--TT---HHHHHHHHHS.S-------SS-EEETT-......-----EEEE----GGGGHH CS
   PF09439.5   5 avllvGlsdsGKTslftrLttd.svkktvtSqessaalkv...ksekgkkltliDfPGheklrqk 65 
                 av +vG  ++GK sl + L    s  ++vt ++++a   +   + + +kk+tliD PG  ++r +
  MMETSP0890-20130614|6854_1 226 AVAVVGFPNTGKSSLVQALVRRrSSDHAVTGIDATAGSTTsvrEVRLDKKVTLIDSPGVIRIRPH 290
                 7889***************998567778888866554444234556699*********9999865 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.1e-07   0.00065      38     107 ..     227     294 ..     200     301 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.1e-07
                 EEEE-------HHHHHHH----..----S--------------S-BEEE-.---EEES----TS--GCCS-C CS
  PF03193.11  38 svlvGqSGvGKSsLinallpel..dlkvgevseklgrGkhTTtavellklsegglliDtPGfrelelekvek 107
                 +++vG    GKSsL++al+ +   d +v  + ++   G  +Tt+v+ ++l+++ +liD+PG+ ++  ++  k
  MMETSP0890-20130614|6854_1 227 VAVVGFPNTGKSSLVQALVRRRssDHAVTGIDAT--AG--STTSVREVRLDKKVTLIDSPGVIRIRPHEAVK 294
                 568899999*********9865114455555544..44..688899999************98887765555 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00069      0.63     114     171 ..     131     187 ..     110     190 .. 0.70
   2 !    5.8   0.0    0.0084       7.7       2      27 ..     226     251 ..     225     274 .. 0.82
   3 ?   -1.1   0.0         1   9.6e+02     107     126 ..     265     284 ..     253     324 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00069
                 E-EEEEEEETTTHCHHHHHHHHHHHHHCT-S..EEEEE-CCCTTTT..HHHHHHHHHHH- CS
  PF02492.14 114 ldavvtvvdvknltegedkpekledqlaaAd..livlnKiDlldaeadlekleedlrkln 171
                  d v  v+d++  +  ++ +e+le+q+      +++lnKiDl++++   ++  ++lrk++
  MMETSP0890-20130614|6854_1 131 TDVVLEVLDAR--DPLSSHSEELESQILPPKrlILILNKIDLIPQDIA-QRWLHYLRKVR 187
                 56777788884..445566667777776554116789********944.67777777765 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0084
                 EEEEE-------HHHHHHHHCHS--- CS
  PF02492.14   2 vtvltGflGsGKTtLleklleknreg 27 
                 ++ ++Gf+  GK++L+++l+++++ +
  MMETSP0890-20130614|6854_1 226 AVAVVGFPNTGKSSLVQALVRRRSSD 251
                 6789****************644333 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1
                 HHHHHEEE-EEEEEEETTTH CS
  PF02492.14 107 elksdlgldavvtvvdvknl 126
                 +  ++++ld +vt++d+  +
  MMETSP0890-20130614|6854_1 265 TSVREVRLDKKVTLIDSPGV 284
                 445689999*****998655 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.17   1.6e+02      41      99 ..      63     144 ..      10     170 .. 0.72
   2 !   14.6   0.0   2.6e-05     0.024       4     124 ..     224     337 ..     220     345 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.17
   PF13401.1  41 v....fveapastspkellqkllsalglpakg...................rltteellealqealrrrrtrlliiDEaqrL 99 
                 +       a++s ++k+  q+++sa +l ++                     ++++++ +++++ ++++++ l ++D  + L
  MMETSP0890-20130614|6854_1  63 LaqleAAKATSSNKKKKSVQDIVSAAKLRNETfeekqnapkendmivlpelDRSRKAYGKQIAQLIESTDVVLEVLDARDPL 144
                 4444455667777888889999999998888888888888889999999866666666699999999999977777766666 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.6e-05
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaaekarvv.fveapast..spkel.lqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL...seealeelrsllddetgvklvlvGt 124
                 +  ++v+G + +GK+ l++ l+r++        + ++v  ++a+a++  s +e+ l k +  +++p   r + +e +++l+  ++r +       Ea  L   +  a ++lr++ d +  +k +l G 
  MMETSP0890-20130614|6854_1 224 RLAVAVVGFPNTGKSSLVQALVRRRS-------SDHAVtGIDATAGSttSVREVrLDKKVTLIDSPGVIRIRPHEAVKHLLSLAARGSI------EATDLadaPSVAANLLRRCTD-QDALKRILGGA 337
                 67799*******************97.......55555588888888335555544444444444444455555555554444444444......444443324666666677777.76666666665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         2   1.8e+03     114     138 ..     137     166 ..      61     186 .. 0.55
   2 !   19.0   1.0   1.4e-06    0.0013       9      52 ..     209     253 ..     205     385 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2
   PF13191.1 114 lqalvalldaalartr....rpk.lvlvlD 138
                   ++ ++l+ + ++ +     pk l+l+l 
  MMETSP0890-20130614|6854_1 137 VLDARDPLSSHSEELEsqilPPKrLILILN 166
                 112222222222222222222223666654 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.4e-06
   PF13191.1   9 leaLlaalrr.vsegsplllvtGpsGiGKSsLlrelakpillerl 52 
                 l++Ll++l++ ++e + ++ v+G + +GKSsL+++l ++   +++
  MMETSP0890-20130614|6854_1 209 LDSLLQLLKSfAREARLAVAVVGFPNTGKSSLVQALVRRRSSDHA 253
                 567777777655555559*****************6666655533 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.6e-05     0.024       2      25 ..     226     249 ..     225     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.6e-05
                 EEEEE-------HHHHHHHHHHHH CS
   PF03205.9   2 ivavvGpkdsGKTtlieklvnklk 25 
                 +vavvG+ ++GK++l++ lv+  +
  MMETSP0890-20130614|6854_1 226 AVAVVGFPNTGKSSLVQALVRRRS 249
                 69*****************99765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.056        51      41     123 ..      86     178 ..      60     185 .. 0.62
   2 ?    7.2   0.0    0.0055         5       2      22 ..     228     248 ..     227     296 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.056
                 HHHHHHHHHHHHHHHTS..-SEEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHHHHHTTTT........S.TEEEEEE-SSGGGS-HHHHHTT CS
  PF00004.24  41 esekkirelfkeakeka..kpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkkk........eskvivigatnrpdkldpallrgR 123
                  ++k  +e+f+e k++a  +   +++ E+d+  k+   + ++  e+++vv + l + d ++++          +  +i++ n++d +++ +  +R
  MMETSP0890-20130614|6854_1  86 SAAKLRNETFEE-KQNApkENDMIVLPELDRSRKAYgkQIAQLIESTDVVLEVLDARDPLSSHseelesqiLPPKRLILILNKIDLIPQDIA-QR 178
                 344555667776.56667555**********9666633333444455555555555555555588888888444567777788888887776.55 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0055
                 EEE-------HHHHHHHHHHC CS
  PF00004.24   2 llyGppGtGKTllakavakel 22 
                  ++G p tGK++l++a+++  
  MMETSP0890-20130614|6854_1 228 AVVGFPNTGKSSLVQALVRRR 248
                 589**************9874 PP

>> PF00239.16  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.8       5.9   5.4e+03     115     131 ..      22      38 ..      10      47 .. 0.56
   2 ?   12.5   0.2    0.0001     0.091      16      96 ..      64     139 ..      58     156 .. 0.76
   3 ?   -3.0   0.0         6   5.5e+03       6      28 ..     197     223 ..     196     238 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.9
                 HHHHHCCCCHHHHHH-- CS
  PF00239.16 115 alaeferelisertkeg 131
                  + e  r++++e  ++g
  MMETSP0890-20130614|6854_1  22 RVKEHHRKQKKEAKRKG 38 
                 33344444444444444 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.0001
                 HHHHHHHC----G.C-...-EEE.----TSHHHHHCCHHHH-----EEEESSGCC----.HHHHHHHHHHHHHHT-EEEETT CS
  PF00239.16  16 rQlealeayakekwkivkefedkgvsGkkaeRpelqrlledlregdvlvvekldRlgRs.lrdllelleeleekgvklvsld 96 
                 +Qlea +a   +k    k+++d  vs++k+  + +++  ++ +e+d++v  +ldR      +++    + +e+ +v l +ld
  MMETSP0890-20130614|6854_1  64 AQLEAAKATSSNK--KKKSVQDI-VSAAKLRNETFEEKQNAPKENDMIVLPELDRSRKAyGKQI---AQLIESTDVVLEVLD 139
                 7889999888766..345699*9.******99***********************877744444...445666677777766 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 6
                 EECTTC..HT..CHHHHHHHHC----G CS
  PF00239.16   6 RvStee..qg..lerQlealeayakek 28 
                 R S+++  q+  l++ l+ l+ +a+e 
  MMETSP0890-20130614|6854_1 197 RPSSKTkvQDlgLDSLLQLLKSFAREA 223
                 666666666666666666666666555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       7.6   6.9e+03      59     118 ..      19      32 ..       5      41 .. 0.50
   2 ?    2.9   0.1      0.13   1.2e+02      22      93 ..      72     143 ..      60     171 .. 0.76
   3 ?    8.7   0.0    0.0019       1.8       1      22 [.     227     248 ..     227     280 .. 0.83
   4 ?   -2.4   0.6       5.4   4.9e+03      38      61 ..     446     469 ..     429     476 .. 0.57

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 7.6
   PF13238.1  59 lldkleeneselaegenviidghlaeleledlkdlklvvLradpeelarRlekRgrkeek 118
                 +++ ++e+                                               rk++k
  MMETSP0890-20130614|6854_1  19 VQKRVKEHH----------------------------------------------RKQKK 32 
                 344444433..............................................33333 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.13
   PF13238.1  22 l.....gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdl 93 
                 +     +++++d++    l  e +++     ++++ +++++++l +l++ +++++++   +i+++   le+ d++d+
  MMETSP0890-20130614|6854_1  72 TssnkkKKSVQDIVSAAKLRNETFEE-----KQNAPKENDMIVLPELDRSRKAYGKQIAQLIESTDVVLEVLDARDP 143
                 14444577788888888888888888.....9999999999999999999987777777799999988888777765 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0019
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl 22 
                 ++++G p +GK++l ++L +r 
  MMETSP0890-20130614|6854_1 227 VAVVGFPNTGKSSLVQALVRRR 248
                 689***************8884 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 5.4
   PF13238.1  38 evddkidtkeskeldedkldelld 61 
                 +vd  +d+++ +++d++++d ++d
  MMETSP0890-20130614|6854_1 446 DVDMGNDEDDDDDEDMENDDDAYD 469
                 222224445666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1182  (0.0864541); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.99u 0.36s 00:00:01.35 Elapsed: 00:00:01.15
# Mc/sec: 991.60
//
Query:       MMETSP0890-20130614|6856_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-25   88.1   0.6    3.4e-25   87.4   0.4    1.4  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.088   12.1   1.3       0.19   11.1   0.9    1.5  1  PF12160.3  Fibrinogen alpha C domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.4     5e-29   3.4e-25       1      64 []      20      78 ..      20      78 .. 0.97

  Alignments for each domain:
  == domain 1    score: 87.4 bits;  conditional E-value: 5e-29
                HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                d+Y++Lgv+k+as +eIkkaYr+lalk HPDk  +++    e fk++neAy vLsdpekr  yd
  MMETSP0890-20130614|6856_1 20 DHYQVLGVDKKASVAEIKKAYRRLALKNHPDK-GGNP----EEFKKVNEAYAVLSDPEKRTAYD 78
                89******************************.7888....89********************8 PP

>> PF12160.3  Fibrinogen alpha C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   2.8e-05      0.19       8      42 ..     174     208 ..     165     218 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   PF12160.3   8 gsttttr...rsCsktitKtvigpdGrkevikEvvnse 42 
                  sttt+    ++ skt tKt+  pdGr e++ E  +s+
  MMETSP0890-20130614|6856_1 174 ISTTTVIqngKRISKT-TKTIRHPDGRVETTTE--ESS 208
                 3444443111455665.89999***********..555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.71
# Mc/sec: 830.29
//
Query:       MMETSP0890-20130614|6857_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-84  282.8   0.0    2.2e-84  282.4   0.0    1.2  1  PF01409.15 tRNA synthetases class II core domain (F)
    1.5e-05   24.5   0.1    2.1e-05   24.0   0.0    1.4  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    0.00027   19.7   0.1    0.00069   18.3   0.0    1.7  2  PF00152.15 tRNA synthetases class II (D, K and N)


Domain annotation for each model (and alignments):
>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.4   0.0   4.8e-88   2.2e-84       2     245 ..     206     489 ..     205     491 .. 0.96

  Alignments for each domain:
  == domain 1    score: 282.4 bits;  conditional E-value: 4.8e-88
  PF01409.15   2 ldvtlpgkrieagklhpltkvleeikeiflelgfeeve.gpevesefynfdaLnipqdhpaRdmqdtFylkkpeka................................eekkllLRthttavqartl.........aekkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygieDiRelyen..dlrfle 245
                 +++++ g++++ g ++pl kv+ e+++i++ +gf+e+  ++ ves+f+nfdaL++pq+hpaRd++dtF++k+p+ a                                e+ k+lLRthttav+ar+l         +e   +p+k++si+rvfR++++D thl eFhqveglv+d ++sl +l++++++f++k+ g + ++rf+p+++p+tePs+ev+ y+  ++ k+w E++++Gm+rpe+l+++g++ +v+++a+Gl++eR +m+ky i++iR+l+ +  dlr ++
  MMETSP0890-20130614|6857_1 206 YNFDALGAPVTGGYIQPLLKVRAEFRRILMGMGFTEMPtNRWVESSFWNFDALFQPQSHPARDAHDTFFIKEPRLAlswpeqyyervktmheeggagslghrcifdseEAAKNLLRTHTTAVSARMLyklaeqnlkSEGSFKPTKLFSIDRVFRNESMDSTHLCEFHQVEGLVADYDLSLGHLIATIRTFFEKI-GIT-QLRFKPAFNPYTEPSMEVFGYH--PDLKRWTEIGNSGMFRPEMLAPMGFPPNVRVIAWGLSLERPTMIKYRISNIRDLFGHkaDLRRTR 489
                 899999*******************************98999****************************9999889******************************9888****************999877665555569****************************************************.**9.**********************..*******************************************************9866776665 PP

>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.5e-09   2.1e-05      58     149 ..     319     407 ..     147     415 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.5e-09
                 EE-SSTHHHHCTTCCCCEECTCCG....-SEEEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT-GGEEEE CS
  PF00587.20  58 yLrPetaqgifllfkkllesnyrk....lPlklaqigkvfRnEisprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgieklrfr 149
                  Lr  t++  +++  kl e+n +      P kl++i +vfRnE       + + eF+q+e  +   +      l++l+a i++f+ek+gi++lrf+
  MMETSP0890-20130614|6857_1 319 LLRTHTTAVSARMLYKLAEQNLKSegsfKPTKLFSIDRVFRNES-MD--STHLCEFHQVEGLVADYD----LSLGHLIATIRTFFEKIGITQLRFK 407
                 66766666666665555554433334449**************5.44..47799******9887777....78*****************999997 PP

>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.82   3.7e+03      27      46 ..     225     244 ..     224     251 .. 0.86
   2 !   18.3   0.0   1.5e-07   0.00069      94     123 ..     349     377 ..     323     436 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHTT-EE--- CS
                 xxxxxxxxxxxxxxxxxxxx RF
  PF00152.15  27 kiikairefldergFleveT 46 
                 k+ +++r++l   gF+e+ T
  MMETSP0890-20130614|6857_1 225 KVRAEFRRILMGMGFTEMPT 244
                 57789999*******99877 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.5e-07
                 SEEEEEEEEE----S-STT-SSEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00152.15  94 drvfqiarcFRdEdlradrhppEFtqldlE 123
                  + f i r+FR+E++ +++h+ EF q++  
  MMETSP0890-20130614|6857_1 349 TKLFSIDRVFRNESM-DSTHLCEFHQVEGL 377
                 589************.**********9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.73
# Mc/sec: 1628.21
//
Query:       MMETSP0890-20130614|6858_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   89.0   0.3    2.5e-25   87.8   0.2    1.7  1  PF00900.15 Ribosomal family S4e
    2.6e-19   68.6   5.7    5.1e-19   67.7   3.9    1.5  1  PF08071.7  RS4NT (NUC023) domain
    3.3e-09   35.9   0.1    1.4e-08   33.8   0.0    2.1  2  PF01479.20 S4 domain
    1.7e-05   24.0   0.4    5.3e-05   22.5   0.3    1.9  1  PF00467.24 KOW motif


Domain annotation for each model (and alignments):
>> PF00900.15  Ribosomal family S4e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.2   7.2e-29   2.5e-25       1      74 [.      94     167 ..      94     174 .. 0.95

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 7.2e-29
                 CG--EEEEEE-----EEEEE--TTGGGEEEEEEEEEEEE--SEEEEEETTTEEEEC--TT-----EEEEETTTT CS
  PF00900.15   1 ktgehyRvlydekgrlvlvkIseeeAkyKlckiknkttvkggkiqlnlhdGrnilvddpkyktgdslvidlpeq 74 
                 k+g+++R++yd+kgr+ l+  s+ee+k+Klc+++ ++t  +++++l++hdGr+++++dp +k++d++++++ ++
  MMETSP0890-20130614|6858_1  94 KSGDQFRLMYDTKGRFSLHALSNEEKKFKLCRVNAVYTTAKKIPVLTTHDGRTVRYPDPLIKVNDVIKLSIVND 167
                 689*******************************************************************9765 PP

>> PF08071.7  RS4NT (NUC023) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   3.9   1.5e-22   5.1e-19       1      38 []       3      40 ..       3      40 .. 0.98

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 1.5e-22
                -------BGGGS-GGGT-------B----------SSS CS
   PF08071.7  1 kGpkkHLKRlaAPkhWpldkkegkfavkPspGPHklee 38
                +GpkkHLKR++APkhW+l k+ g fa++Ps+GPHkl+e
  MMETSP0890-20130614|6858_1  3 RGPKKHLKRVNAPKHWMLGKMDGAFAPRPSTGPHKLRE 40
                7***********************************97 PP

>> PF01479.20  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.2e-12   1.4e-08       3      48 .]      44      90 ..      42      90 .. 0.94
   2 ?   -1.5   0.1      0.44   1.5e+03      31      48 .]     143     160 ..     143     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 4.2e-12
                HHHHH.HHHH--SSHHHHHHHHHTT-EEE---B---TT-BE-TTSEE CS
  PF01479.20  3 LDkvL.arlglassrseArqlIehGhVrVNGkvvkdpsyrVkpgDvi 48
                L  +L  rl++a + +eA+ +++++ V+V+Gkv++dp ++ +++Dvi
  MMETSP0890-20130614|6858_1 44 LVLILrNRLKYAITGQEAKMICMEKCVKVDGKVRTDPTFPAGFMDVI 90
                6777889**************************************98 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.44
                 ---B---TT-BE-TTSEE CS
  PF01479.20  31 NGkvvkdpsyrVkpgDvi 48 
                 +G+ v++p   +k++Dvi
  MMETSP0890-20130614|6858_1 143 DGRTVRYPDPLIKVNDVI 160
                 788899998889999987 PP

>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.3   1.6e-08   5.3e-05       2      32 .]     182     215 ..     181     215 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.6e-08
                 TBEEEE-----TT-EEEEEEEETTT...CEEEEE CS
  PF00467.24   2 GdyVrvisGpfkGrpGkvvevdrsk...arVvve 32 
                 G  + ++ G++ Gr G++v+++r+    + V+v+
  MMETSP0890-20130614|6858_1 182 GAICTITKGRNTGRNGTIVQIERHPgsfDVVTVK 215
                 8899*********************999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.80
# Mc/sec: 787.80
//
Query:       MMETSP0890-20130614|6860_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.4   8.2      0.005   16.3   5.7    1.6  1  PF00628.24 PHD-finger
  ------ inclusion threshold ------
          6    6.3   7.6       0.42   10.0   0.2    2.5  3  PF00569.12 Zinc finger, ZZ type


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   5.7   7.3e-07     0.005       1      49 [.     106     152 ..     106     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.3e-07
                 SBTTTTC.TCTTS-EEEBSSSS.SEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   1 rCkiCge.sdeegelvlCdgCk.ewfHlkClglkleseekpegewlCeeCk 49 
                 +C iC++  + + +++ Cd+ + +  H +Clg+     ++p g+w+C++C+
  MMETSP0890-20130614|6860_1 106 VCIICDKtVQFQANVLRCDKNEnHQAHCACLGMA----SIPPGRWQCPQCQ 152
                 5******555599******7654899*******9....678889******8 PP

>> PF00569.12  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5      0.15     1e+03       2      25 ..     102     123 ..     101     126 .. 0.71
   2 ?   10.0   0.2   6.1e-05      0.42       2      29 ..     128     155 ..     127     155 .. 0.89
   3 ?   -1.9   0.0      0.34   2.3e+03      16      24 ..     252     260 ..     250     261 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.15
                 SS-EE-TTT-S..EESSEEEESSS CS
  PF00569.12   2 kkqykCniCkecpiigvRyhclkc 25 
                 kk+  C iC +  ++++    l+c
  MMETSP0890-20130614|6860_1 102 KKEIVCIICDK--TVQFQANVLRC 123
                 67788999988..77776666666 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 6.1e-05
                 SS-EE-TTT-S..EESSEEEESSSSS-E CS
  PF00569.12   2 kkqykCniCkecpiigvRyhclkcsdYD 29 
                  +q++C   + + i + R++c +c+d+D
  MMETSP0890-20130614|6860_1 128 NHQAHCACLGMASIPPGRWQCPQCQDTD 155
                 58999988888888899**********9 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.34
                 ESSEEEESS CS
  PF00569.12  16 igvRyhclk 24 
                 +g Ry c +
  MMETSP0890-20130614|6860_1 252 NGLRYMCFR 260
                 789**9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1258  (0.0920129); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:01.25
# Mc/sec: 686.32
//
Query:       MMETSP0890-20130614|6859_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.76
# Mc/sec: 731.52
//
Query:       MMETSP0890-20130614|6863_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-31  108.3   0.0    4.2e-31  108.0   0.0    1.1  1  PF09353.5 Domain of unknown function (DUF1995)


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   3.1e-35   4.2e-31       4     209 ..      29     252 ..      26     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 3.1e-35
   PF09353.5   4 sleeaieqakealaaaLkagkrrllielefp..gl.ik......kllplalellqkLae......agrkllvvfpdageaalakrdl.gdlg.......fkllslkdrkeselesafedllilvapqpieleevekvaeaaad...rpvvllNprLedaaavgigsearelrkrFlstfevvYylrpleysgkgalfrcypepWqlfkede..nggyklvaefesrPtleevee 209
                 s+e a + a+ a+ +++ +gk+ ++i+++    ++ +       +    ++ ++ +La       ++++l ++fpdag+aala++++   ++       +   +lk +++++ +++ ++ ++++ p ++e + ve + + +a    +p vl+Np+L d +++g g+++r+l++r+l  ++++Y l++l     gal  +yp+ +++++ed   ++gykl+++ ++ P++ee+ee
  MMETSP0890-20130614|6863_1  29 SFEIATTVAAGAVMDCISRGKTLIRIDFDTSngDAtYTklknslE---FTRYVAANLATrmlaqdTNSQLCLFFPDAGAAALAAQQWkLGTPeamlganV---NLKSFPRDKPSKE-DSNFLVICPRASEASAVEILIDDVARtqqKPTVLINPELVDMGTTGYGFAGRRLKQRLLDELTQAYLLKTL--PW-GALALTYPNLYSVYQEDAnaPDGYKLLTTRPTLPNGEELEE 252
                 778889999*********655555555555554225225665452...444444443333333446699******************8777765553322...3444444444443.799*******************9999999******************************************..66.9****************9767*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.98
# Mc/sec: 696.90
//
Query:       MMETSP0890-20130614|6868_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.2   0.1      0.033   13.9   0.0    1.2  1  PF13422.1 Domain of unknown function (DUF4110)


Domain annotation for each model (and alignments):
>> PF13422.1  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-06     0.033      14      39 ..       6      31 ..       3      47 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.4e-06
   PF13422.1 14 pgEslrdFyaRTsaeWqeaaiestqd 39
                ++E  +dF+ R ++eW + +i+s+q+
  MMETSP0890-20130614|6868_1  6 MDEFQKDFFLRRQNEWEKYVIKSKQR 31
                68999*****************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.85
# Mc/sec: 219.90
//
Query:       MMETSP0890-20130614|6870_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-13   49.6   0.1    3.3e-13   48.9   0.1    1.3  1  PF07962.7 Replication Fork Protection Component Swi3


Domain annotation for each model (and alignments):
>> PF07962.7  Replication Fork Protection Component Swi3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   2.4e-17   3.3e-13       2      82 ..      71     151 ..      70     153 .. 0.91

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.4e-17
   PF07962.7   2 ldeerllsekGlpalrklf.kkvkfkgkgheaedLssllqfyqlWahrLfPkakFkdfvalveklGkkkelrtylkelieee 82 
                 ++ + l++ +Gl  +     k  kf+ +++ a d  +l+q y  W+++LfP + F++f+a+v++lG++ ++r++l++++e++
  MMETSP0890-20130614|6870_1  71 FTIDDLVKAQGLDWIQSELpKMAKFE-HKDPAADALRLIQGYRAWHQQLFPHLPFDEFLARVNRLGAQARIRNFLESMREDQ 151
                 5667899999***9999998999996.778889999******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 901.96
//
Query:       MMETSP0890-20130614|6867_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-13   48.9   0.0    2.6e-06   26.9   0.0    2.5  2  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-10   2.6e-06      22      67 ..     171     224 ..     163     255 .. 0.67
   2 !   19.4   0.0   4.1e-08   0.00056      36     100 ..     386     451 ..     376     452 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.9e-10
  PF02225.17  22 ckdddlaksdvkGkIvlv.rrgvctfsekaevaqeaGAkgviiin.......ps 67 
                 c + d a +++  + +++ +rg+c+f+eka++a++ GA+ + +in        +
  MMETSP0890-20130614|6867_1 171 CRNFDKAFQSIYSNALIIaDRGGCSFVEKAWNAHRVGAAILAVINdpeksfdRP 224
                 5555555555555555556**************************765544222 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4.1e-08
  PF02225.17  36 IvlvrrgvctfsekaevaqeaGAkgviiin.pseaalpggtkvgpsdvgiPvvvisradgeallay 100
                  +l +rg+c+fs k++ a +  A+++iii+ +s   + +g + +  + ++ + +i+ +++  ll+y
  MMETSP0890-20130614|6867_1 386 AILADRGGCNFSVKTAFADSVAAAALIIIDpSSQPLQRMGLRAPRLPPSLTGLMIDHDTATVLLEY 451
                 5788**************************655555556666666677777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.96
# Mc/sec: 1377.91
//
Query:       MMETSP0890-20130614|6872_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-92  310.0   0.5    2.2e-92  309.2   0.3    1.3  1  PF06732.6  Pescadillo N-terminus
  ------ inclusion threshold ------
      0.086   12.8   0.0       0.29   11.1   0.0    2.0  1  PF00533.21 BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> PF06732.6  Pescadillo N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.2   0.3   3.2e-96   2.2e-92       5     243 ..      55     288 ..      51     320 .. 0.91

  Alignments for each domain:
  == domain 1    score: 309.2 bits;  conditional E-value: 3.2e-96
   PF06732.6   5 ekgkakkyltrkqalkkLqlsladFRrlCilkGiyPrepkkkkkankgstaektfYlakdikfLlhepivekfreykvfakklkkakakkeleklkrlkenkpeykLdhiikERyPtfidAlrdlDDalsliflfstlpsteklksklvekcrrlteefqaYviksrslrkvFisikGiYyqAeikgekvtWivPhefaek..lptdvdfkvlltFlEfYtallkFvnfkLykdlnlkypp 243
                 e g+  +y+tr+ +l++Lq++l+dFRrlCilkGiyPr++ + k        ++t+Y++kdi+ L+hep++ kfre+k+f++k+++  ++++++ ++r +++ p+y L+h+ikERyP f dAl+dlDDals++flf+ lp++ ++++++++kc++l+++++ Yv+   +l+k+FisikGiY+qA i+g  +tW+vPh+fa++  ++ +vd++v+ltFlE+Y++l kFv+fkLy+d++ k+ +
  MMETSP0890-20130614|6872_1  55 ETGFGGSYITRSVILRRLQITLKDFRRLCILKGIYPRDVAHGKS-------NQTYYHIKDIQSLAHEPLLVKFREFKTFMRKVRHFVGRGDIQGARRKYDQVPTYLLNHLIKERYPKFNDALNDLDDALSMLFLFAALPAQGRVSADRIAKCEELCQRWNSYVSTVGVLTKAFISIKGIYFQACIRGIDITWLVPHQFAHDppSNRQVDYRVMLTFLELYETLTKFVLFKLYRDDAEKFVN 288
                 6788899********************************99764.......468************************************************************************************************************************************************998224568**************************99866533 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.3e-05      0.29       3      77 ..     298     363 ..     296     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.3e-05
                 TTTTTTCEEEESSTTSSHHHHH.HHHHHHCT-EEESSGSSSCSEEEEECCBSHCHHHHHHHHTTCEEEETHHHHHH CS
  PF00533.21   3 pklFeglkfyigtfdnfnreel.eelikelGGkvstevskktthlvvgepelrtlkylaaialnipivneeWlldc 77 
                   +F+ l+f +   + +++ ++ e+l+k+ G+ +  ++ +k th+v+++         +   +++  ++++W+ d+
  MMETSP0890-20130614|6872_1 298 DRIFSHLRFAL---SRETKYSWlEFLLKSAGAQL-VDDPSKATHFVTDRA------NPQPVPNGVEQIQPQWIVDS 363
                 57999999***...555555556**********9.777888999998888......78889999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.88
# Mc/sec: 1337.06
//
Query:       MMETSP0890-20130614|6873_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-12   45.6  10.2    0.00032   20.1   0.9    3.7  3  PF13414.1  TPR repeat
    4.4e-07   29.4   1.5        0.2   11.8   0.1    4.0  3  PF13431.1  Tetratricopeptide repeat
    8.7e-07   28.1   3.7      0.027   14.1   0.0    4.7  5  PF13181.1  Tetratricopeptide repeat
    3.9e-06   26.1  12.1     0.0082   15.5   0.0    4.7  5  PF00515.23 Tetratricopeptide repeat
    0.00022   20.8  13.8      0.038   13.8   0.1    5.7  6  PF07719.12 Tetratricopeptide repeat
     0.0019   17.9   0.1       0.69    9.7   0.0    3.2  3  PF13371.1  Tetratricopeptide repeat
     0.0022   18.4  12.5     0.0098   16.4   0.5    3.6  3  PF13432.1  Tetratricopeptide repeat
     0.0078   16.0   8.0       0.19   11.5   0.1    4.0  4  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.4   5.1       0.72   10.5   0.3    4.2  4  PF13428.1  Tetratricopeptide repeat
       0.05   12.5   1.1      0.082   11.8   0.0    1.9  3  PF05314.6  Baculovirus occlusion-derived virus envelope protein EC27


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.9   2.4e-07   0.00032      20      65 ..      59     103 ..      39     107 .. 0.89
   2 !   12.8   0.3   4.5e-05     0.061      21      50 ..     132     161 ..     129     185 .. 0.86
   3 !   17.0   0.0   2.2e-06     0.003      36      68 ..     213     244 ..     202     245 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.4e-07
   PF13414.1  20 deAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  +A+ea+ +A++l p+  e++++l+++++k+g   e+A +++e  l
  MMETSP0890-20130614|6873_1  59 NQAEEALCRAVKLAPEAVEAWNALGHVLWKKG-AIEAAKDCFESGL 103
                 69******************************.8888888888766 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 4.5e-05
   PF13414.1  21 eAieayekAleldpnnaelyynlAlaylkl 50 
                 +Ai++ + A+el+ +n++ +y+l+ +y  +
  MMETSP0890-20130614|6873_1 132 QAIQHARSAVELQIDNPDNWYALGNCYVAR 161
                 8**************************886 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 2.2e-06
   PF13414.1  36 naelyynlAlaylklgkdyeeAledyekAleld 68 
                 n++ly+n++++     + y+ A++d++kA++ld
  MMETSP0890-20130614|6873_1 213 NPDLYFNRGHLRKYI-EAYHLAATDFNKAHSLD 244
                 8*************6.69*************98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00025      0.34       4      32 ..      67      95 ..      67      97 .. 0.88
   2 !   11.8   0.1   0.00014       0.2       4      24 ..     139     159 ..     136     176 .. 0.85
   3 ?    2.9   0.0       0.1   1.4e+02      12      24 ..     213     225 ..     203     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
   PF13431.1  4 kaleldPnnadaynnLAelllnnGdleeA 32
                +a++l+P+ ++a+n+L+ +l ++G  e A
  MMETSP0890-20130614|6873_1 67 RAVKLAPEAVEAWNALGHVLWKKGAIEAA 95
                79*****************9999876666 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00014
   PF13431.1   4 kaleldPnnadaynnLAelll 24 
                  a+el+ +n+d++++L++++ 
  MMETSP0890-20130614|6873_1 139 SAVELQIDNPDNWYALGNCYV 159
                 589999*************97 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.1
   PF13431.1  12 nadaynnLAelll 24 
                 n+d+y+n++ l +
  MMETSP0890-20130614|6873_1 213 NPDLYFNRGHLRK 225
                 9********8865 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0057       7.8      15      32 ..      56      73 ..      48      76 .. 0.84
   2 !   14.1   0.0     2e-05     0.027       2      26 ..      77     101 ..      75     106 .. 0.92
   3 ?   -2.9   0.0       5.1     7e+03      16      30 ..     129     143 ..     127     144 .. 0.81
   4 ?   -0.5   0.0      0.89   1.2e+03       4      11 ..     151     158 ..     148     160 .. 0.88
   5 ?    4.6   0.0     0.021        29       3      31 ..     216     244 ..     214     247 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0057
                T-HHHHHHHHH---HHHH CS
   PF13181.1 15 GdydkAkeylekalelkp 32
                G   +A+e+l++a++l+p
  MMETSP0890-20130614|6873_1 56 GYNNQAEEALCRAVKLAP 73
                66678***********99 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2e-05
                 --TTT---HHHHTT-HHHHHHHHH- CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylek 26 
                 +a+++lG++++++G +++Ak ++e 
  MMETSP0890-20130614|6873_1  77 EAWNALGHVLWKKGAIEAAKDCFES 101
                 79*********************96 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 5.1
                 -HHHHHHHHH---HH CS
   PF13181.1  16 dydkAkeylekalel 30 
                 ++ +A+++ + a+el
  MMETSP0890-20130614|6873_1 129 QKNQAIQHARSAVEL 143
                 677899999999987 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.89
                 TTT---HH CS
   PF13181.1   4 yynlGdiY 11 
                 +y+lG +Y
  MMETSP0890-20130614|6873_1 151 WYALGNCY 158
                 9******9 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.021
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelk 31 
                 +y+n+G++ +    y++A   ++ka +l+
  MMETSP0890-20130614|6873_1 216 LYFNRGHLRKYIEAYHLAATDFNKAHSLD 244
                 89**********************96665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       3.1   4.3e+03      19      32 ..      60      73 ..      59      74 .. 0.76
   2 !   15.5   0.0     6e-06    0.0082       1      26 [.      76     101 ..      76     104 .. 0.92
   3 ?   -0.1   0.0      0.51     7e+02      18      31 ..     131     144 ..     129     147 .. 0.85
   4 ?    2.7   0.1      0.07        95       4      11 ..     151     158 ..     148     161 .. 0.87
   5 !   12.9   0.1   4.3e-05     0.058       2      31 ..     215     244 ..     214     246 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHT CS
  PF00515.23 19 eAleyyekALelnP 32
                +A+e+  +A++l P
  MMETSP0890-20130614|6873_1 60 QAEEALCRAVKLAP 73
                67777779999998 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 6e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHH CS
  PF00515.23   1 akalynlGnaylklgkydeAleyyek 26 
                 ++a++ lG+++ k+g  + A +++e 
  MMETSP0890-20130614|6873_1  76 VEAWNALGHVLWKKGAIEAAKDCFES 101
                 58**********************96 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHHH CS
  PF00515.23  18 deAleyyekALeln 31 
                 ++A+++ + A+el+
  MMETSP0890-20130614|6873_1 131 NQAIQHARSAVELQ 144
                 79********9996 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.07
                 HHHHHHHH CS
  PF00515.23   4 lynlGnay 11 
                 +y lGn+y
  MMETSP0890-20130614|6873_1 151 WYALGNCY 158
                 9******* PP

  == domain 5    score: 12.9 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALeln 31 
                 + ++n+G++  + + y  A  +++kA +l+
  MMETSP0890-20130614|6873_1 215 DLYFNRGHLRKYIEAYHLAATDFNKAHSLD 244
                 78*************************998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.62   8.5e+02      17      33 ..      58      74 ..      54      75 .. 0.81
   2 !   13.8   0.1   2.8e-05     0.038       2      26 ..      77     101 ..      76     106 .. 0.92
   3 ?    0.6   0.0      0.45   6.2e+02      16      33 ..     129     146 ..     126     147 .. 0.82
   4 ?    2.4   0.0      0.12   1.7e+02       2      12 ..     149     159 ..     148     161 .. 0.83
   5 ?   -3.0   0.0       6.3   8.6e+03      24      30 ..     181     187 ..     173     190 .. 0.48
   6 !    8.1   0.2    0.0018       2.5       1      31 [.     214     244 ..     214     247 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.62
                HHHHHHHHHHHHHH-TT CS
  PF07719.12 17 yeeAleafekAleldPn 33
                 ++A+ea+ +A++l+P+
  MMETSP0890-20130614|6873_1 58 NNQAEEALCRAVKLAPE 74
                5789999999****997 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafek 26 
                 ea+++lG +++k+g  e A+++fe 
  MMETSP0890-20130614|6873_1  77 EAWNALGHVLWKKGAIEAAKDCFES 101
                 8**********************95 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.45
                 -HHHHHHHHHHHHHH-TT CS
  PF07719.12  16 dyeeAleafekAleldPn 33 
                 + ++A+++ + A+el+ +
  MMETSP0890-20130614|6873_1 129 QKNQAIQHARSAVELQID 146
                 6789**********9755 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.12
                 HHHHHHHHHHH CS
  PF07719.12   2 ealynlGlayy 12 
                 + +y+lG++y 
  MMETSP0890-20130614|6873_1 149 DNWYALGNCYV 159
                 67*******96 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 6.3
                 HHHHHHH CS
  PF07719.12  24 fekAlel 30 
                 + +A  l
  MMETSP0890-20130614|6873_1 181 YARAEIL 187
                 4444333 PP

  == domain 6    score: 8.1 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 +++++n+G +  +   y  A+ +f+kA +ld
  MMETSP0890-20130614|6873_1 214 PDLYFNRGHLRKYIEAYHLAATDFNKAHSLD 244
                 579*************************998 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0005      0.69      13      56 ..      60     103 ..      53     111 .. 0.88
   2 ?   -0.8   0.0       0.9   1.2e+03      15      40 ..     134     159 ..     130     162 .. 0.79
   3 ?    3.8   0.0     0.034        47      29      58 ..     214     243 ..     207     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0005
   PF13371.1  13 rALavverllllaPddpyerRDrGlllaqlgclaaAaedLeafl 56 
                 +A +++ r + laP++++ +   G +l + g+ +aA +++e  l
  MMETSP0890-20130614|6873_1  60 QAEEALCRAVKLAPEAVEAWNALGHVLWKKGAIEAAKDCFESGL 103
                 6777888999*****************************99755 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.9
   PF13371.1  15 LavverllllaPddpyerRDrGllla 40 
                 ++ + + ++l+ d p +++  G +++
  MMETSP0890-20130614|6873_1 134 IQHARSAVELQIDNPDNWYALGNCYV 159
                 55566677888899999999999997 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.034
   PF13371.1  29 pyerRDrGlllaqlgclaaAaedLeaflel 58 
                 p ++  rG l+   ++++ Aa+d++ +  l
  MMETSP0890-20130614|6873_1 214 PDLYFNRGHLRKYIEAYHLAATDFNKAHSL 243
                 788999******************988744 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   7.2e-06    0.0098      14      50 ..      59      95 ..      45     103 .. 0.92
   2 !    8.7   0.3    0.0019       2.6      15      44 ..     132     161 ..     129     191 .. 0.78
   3 ?   -1.0   0.2       2.1   2.8e+03       6      27 ..     216     237 ..     215     250 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.2e-06
   PF13432.1 14 deAlaaleaalalaPeaaeallllaeallrlgrldeA 50
                 +A++al +a++laPea+ea+ +l+ +l+++g  ++A
  MMETSP0890-20130614|6873_1 59 NQAEEALCRAVKLAPEAVEAWNALGHVLWKKGAIEAA 95
                69*******************************9998 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0019
   PF13432.1  15 eAlaaleaalalaPeaaeallllaeallrl 44 
                 +A+++ + a++l+ ++++ +++l+ ++ ++
  MMETSP0890-20130614|6873_1 132 QAIQHARSAVELQIDNPDNWYALGNCYVAR 161
                 89************************9876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 2.1
   PF13432.1   6 allraGdydeAlaaleaalala 27 
                 +++++G++++ ++a+  a  ++
  MMETSP0890-20130614|6873_1 216 LYFNRGHLRKYIEAYHLAATDF 237
                 5778888888888886665555 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.36   4.9e+02      44      77 ..      39      73 ..      17      74 .. 0.63
   2 !   11.5   0.1   0.00014      0.19       5      44 ..      76     116 ..      72     144 .. 0.79
   3 ?    0.3   0.0      0.43   5.8e+02      23      59 ..     132     161 ..     124     164 .. 0.63
   4 ?    5.5   0.1     0.011        14       6      40 ..     215     249 ..     212     256 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.36
   PF13424.1 44 dtaralnnlanlyla.lgdydeAleylekAleiae 77
                d+ar+ +  ++++    g + +A+e l +A+++a+
  MMETSP0890-20130614|6873_1 39 DRARLAYLNGRALDSsSGYNNQAEEALCRAVKLAP 73
                44444444444444437788999999999999875 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00014
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalel.lrelgddhpd 44 
                   ++n l++vl+++g  + A +++e  l+  +   g++ + 
  MMETSP0890-20130614|6873_1  76 VEAWNALGHVLWKKGAIEAAKDCFESGLNArANAIGHRYLS 116
                 5789**************************66677877654 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.43
   PF13424.1  23 eAlelyekalellrelgddhpdtaralnnlanlylal 59 
                 +A+++ + a+el         d  + ++ l+n+y+a+
  MMETSP0890-20130614|6873_1 132 QAIQHARSAVEL-------QIDNPDNWYALGNCYVAR 161
                 445555555544.......444455777888888775 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.011
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgd 40 
                 ++++n +++ +  + y+ A + ++ka  l + l+ 
  MMETSP0890-20130614|6873_1 215 DLYFNRGHLRKYIEAYHLAATDFNKAHSLDQALKA 249
                 57999999*99***************999666655 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00052      0.72      14      42 ..      55      83 ..      39      85 .. 0.81
   2 ?    7.6   0.0    0.0046       6.2       2      30 ..      77     105 ..      76     116 .. 0.86
   3 ?    3.3   0.0      0.11   1.5e+02      19      42 ..     132     155 ..     129     157 .. 0.79
   4 ?   -1.3   0.0       3.2   4.4e+03      11      31 ..     217     237 ..     215     249 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00052
   PF13428.1 14 lGdpdeAiallrralalaPddaealllLa 42
                +G   +A+++l ra++laP+  ea+ +L+
  MMETSP0890-20130614|6873_1 55 SGYNNQAEEALCRAVKLAPEAVEAWNALG 83
                577789*******************9998 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0046
   PF13428.1   2 eallalarallalGdpdeAiallrralal 30 
                 ea+ al+++l+  G  ++A ++++  l +
  MMETSP0890-20130614|6873_1  77 EAWNALGHVLWKKGAIEAAKDCFESGLNA 105
                 89*********************998754 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.11
   PF13428.1  19 eAiallrralalaPddaealllLa 42 
                 +Ai+++r a++l+ d+++ +++L+
  MMETSP0890-20130614|6873_1 132 QAIQHARSAVELQIDNPDNWYALG 155
                 8**********8777777777776 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 3.2
   PF13428.1  11 llalGdpdeAiallrralala 31 
                 ++++G++ + i+++  a+ ++
  MMETSP0890-20130614|6873_1 217 YFNRGHLRKYIEAYHLAATDF 237
                 677777777777666555444 PP

>> PF05314.6  Baculovirus occlusion-derived virus envelope protein EC27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   2.2e+03     129     160 ..      29      60 ..      15      72 .. 0.63
   2 ?   -3.9   0.1       3.6   4.9e+03     178     190 ..     267     279 ..     243     292 .. 0.51
   3 ?   11.8   0.0     6e-05     0.082      87     146 ..     340     403 ..     337     425 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.6
   PF05314.6 129 eedetivCyiDrpsilriLekevDvnvkveee 160
                 ++ ++ +C  Dr  ++ +  + +D +   +++
  MMETSP0890-20130614|6873_1  29 QQAQQKMCSTDRARLAYLNGRALDSSSGYNNQ 60 
                 44555667777777776666666665555555 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.6
   PF05314.6 178 kkkrrsedkekke 190
                 +kk++s++++kk+
  MMETSP0890-20130614|6873_1 267 SKKKHSSNQKKKK 279
                 2333332222222 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 6e-05
   PF05314.6  87 LaFvhnrvnPlvnkFekmefvvveerklsipg......ePilFkslreeedetivCyiDrpsilri 146
                 La vhn +nP   +F  + f+  +++ + +pg      eP  F ++ +++d++  C  D + i++ 
  MMETSP0890-20130614|6873_1 340 LAAVHNPINPQDPHFITLSFFDADTK-ALVPGtalfirEPTRF-HVAQHDDDDSSCGYDALRIVHA 403
                 789******************98765.5677645555588889.5669999999*******99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       956  (0.0699239); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:00.92
# Mc/sec: 1112.22
//
Query:       MMETSP0890-20130614|6875_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-44  152.7   0.1    2.1e-44  152.2   0.1    1.1  1  PF01593.19 Flavin containing amine oxidoreductase
    8.1e-13   48.0   0.1    2.1e-12   46.7   0.0    1.6  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.1     3e-48   2.1e-44     236     450 .]       9     229 ..       4     229 .. 0.91

  Alignments for each domain:
  == domain 1    score: 152.2 bits;  conditional E-value: 3e-48
                 EEETSCEEEEEECSSEEEESEEEE-S-HHHCCC..SEEES-EEHHHHHHHHHSEEE-EEEEEEEESSCCSGGT-CEECEECCCS.....CCS-EEEEECECCCCCHCCSEEEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH.....SSB--SEEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHHH CS
  PF01593.19 236 tkegdgvtvttedgrtykaDaVvvTlplgvlkk..ilflPplpdakqeairrlgfgsvnkvileferpfwpenldlfgllvsds.....asrgelvldwskssgspkrpvllsyvlgdaareleslsdeellervledLrkllgn...e.dvpdpkdtvvtrWstdplargsysyvsvgssgddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAaril 450
                 +ke+d++++  +d +++++D  vvT++lg+lk+  i f+Pplp ak +ai+rlgfg+vnk+ + f++++w+++ + + + v        +s+ ++v  w  +s+ p++p+ll++v + ++  +e +sd +ll+ +l  L+k+ +    + d   pk  ++trW+t  +a+gsys+v vg+sg+d++ la+     + fAGeht+r+ ++t +GA++SG raAa+i+
  MMETSP0890-20130614|6875_1   9 KKENDKIKISLSDDSVLSVDILVVTVSLGALKRgdIIFQPPLPSAKKAAIERLGFGTVNKIAISFDTAWWLDQ-NCNVWEVVQRkksntLSWLQQVVAWRVVSE-PGPPTLLAWVTSGED--FETVSDVQLLDTALNALAKISKVsreSlDSYRPKLSLRTRWQT-DIAGGSYSFVKVGASGEDFDLLASEDCWPILFAGEHTHRTRYSTADGAYESGERAAAAII 229
                 46679*******************************************************************9.666665555567788************999.9************88..*********************9764433444455779******.***************99999999987655*****************************97 PP

>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.1e-16   2.1e-12       5      76 ..     237     308 ..     223     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 3.1e-16
                 EEEEEEETTSEEEEEEECSTTS.STTEEEESBEEETTTTSHHHHHHHHHHHHHHS-EEEEEEEEEEEEEEETT CS
  PF00293.23   5 vsvillnedgkvLlvqrsrskl.tapglwefPgGkvdkgEspeeaAvRElkEEtGidlekvrlvgvanydapt 76 
                 ++++++++d +vLl +++ s    apg ++  gGk ++gEs++++A+RE++EEtG+ le++ l+++      +
  MMETSP0890-20130614|6875_1 237 FACVIVRKD-QVLLAEHRASSNhVAPGRLTCFGGKRELGESALDCACREFEEETGYFLEPKALHFSCLLLVNG 308
                 689999999.9***9999998879***********************************99999887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:01.06
# Mc/sec: 897.50
//
Query:       MMETSP0890-20130614|6880_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.7   2.9    4.3e-06   26.9   1.3    2.1  2  PF00264.15 Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> PF00264.15  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   1.3   3.1e-10   4.3e-06      10     191 ..      29     231 ..      13     256 .. 0.69
   2 !    3.6   0.0    0.0041        56     201     217 ..     359     375 ..     337     377 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 3.1e-10
                 CCSSS---SSSSSSS----S----TTHHHHHHHHHHHHHHHHHH--....------B---S......--SS--HHHH-SEEE-TSST-....E..EE-T..T---EETTTTEE-B-............--S-GCCS--------....-HHHHHHHHHHH-...............-SHHHHHHHHHH..............HHHHHHHH--. CS
  PF00264.15  10 iHgaplkewkeaakknkgyciHgsvlFltWHRpYlllfEqalreecgyaapdvrlPYWdwa......eeelpedlansaifdkepegkgggcv..tnplysfkakdltvelgkvee..........daekkkeaetkrclkrnl...eatsanqelakqed.....veellakll.sdytgfsntsega....gksalslespHnavHvwvGg 191
                 +H+         ++++  + +H+ v Fl  H   + lfE  +r ++   ++ ++lPYWd +      +  + +++ +s+++++++ g  +  +  ++ l sf+ k++  + g +             +++   +++ + + r     +a+ + ++++++++      ++++++++ +d++g ++ ++g     + +++   ++H++ H + Gg
  MMETSP0890-20130614|6880_1  29 LHH-------VGSAQRDSDHMHQGVGFLAQHAKLTELFELSIRAVD---KSVLALPYWDSTieeaqvSLGHLDSVFDSELWSDKWFGSINMYIndSETLPSFDSKNWAIHDGVFAYlkalriedayGPSTRWLPHNAYGFLRAPwnnNASPYVTRYPRRTAhlpscQQHWTYAESsTDIRGGNEWTNGHfdkaKWMYDVSTKAHGSLHSSPGG 231
                 444.......4567888999************************99...66799********999998889999999*****999999333335566666899999999988877788876666653333333444444444433332222222222222244444334444433455555555555556665667899999******99994 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0041
                 GGSTHHHHHHHHHHHHH CS
  PF00264.15 201 afDPiFflHHaniDrlw 217
                 + DP F++ H+ + rl 
  MMETSP0890-20130614|6880_1 359 SIDPSFWFIHGALSRLL 375
                 68*********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:01.04
# Mc/sec: 1191.27
//
Query:       MMETSP0890-20130614|6881_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-39  133.0   0.0    9.4e-39  131.8   0.0    1.6  1  PF00179.21 Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.29   10.9   3.5       0.43   10.3   0.3    2.7  2  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   1.4e-42   9.4e-39       1     138 [.     364     505 ..     364     507 .. 0.95

  Alignments for each domain:
  == domain 1    score: 131.8 bits;  conditional E-value: 1.4e-42
                 HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS-...-TTS-SSHHHHHHHHHTHHHHHHHHHH CS
  PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaep...npesplnkeaakllkknreeykkkvke 138
                 rl++e +e+ ++ pegi+a ++++++++ wk++i gp+++pYegg+F+l++kf  +YP+ +P+vkf tkifHPn+d  tG +c d+L+ + Ws+a +++  Llsiqsll++p   + +sp+n++aa+l++++++e+ + v +
  MMETSP0890-20130614|6881_1 364 RLMREAHEMMTRAPEGISACPCKAEDITMWKATILGPPQSPYEGGIFRLELKFSANYPIVAPRVKFLTKIFHPNIDhDTGVVCCDLLEPNAWSAAASIRVLLLSIQSLLTSPtadDSNSPANAQAAHLFHTDYDEFLDIVAN 505
                 899********************99************************************************************************************9986546789****************9988865 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   6.2e-05      0.43      49      72 ..     309     431 ..     225     450 .. 0.63
   2 ?   -2.7   0.1      0.72   4.9e+03      42      42 ..     556     556 ..     517     608 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.2e-05
                 x...................................................................................................xxxxxxxxxxxxxxxxxxxxxxx RF
  PF05773.17  49 p...................................................................................................sleleirlpedYPeeaPiitlss 72 
                                                                                                                      ++le +++ +YP +aP +++ +
  MMETSP0890-20130614|6881_1 309 YpeaklsnsqsrraiewrtlfhlerlkeakistppshdkeenesyrqpisklcsqrlmreahemmtrapegisacpckaeditmwkatilgppqspyeggIFRLELKFSANYPIVAPRVKFLT 431
                 03444444444444444444444444455555555555566666667888888999999999999999999999999999999999999999999999999*****************99866 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.72
                 x RF
  PF05773.17  42 e 42 
                 +
  MMETSP0890-20130614|6881_1 556 S 556
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       986  (0.0721182); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.37s 00:00:01.43 Elapsed: 00:00:01.31
# Mc/sec: 1178.06
//
Query:       MMETSP0890-20130614|6887_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-15   55.2   0.0      6e-15   54.7   0.0    1.2  1  PF01553.16 Acyltransferase


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.4e-19     6e-15       7     129 ..     127     285 ..     117     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 4.4e-19
  PF01553.16   7 lenlpekgpaivvaNHqsylDvlllwlllyksn.p.......envviiakkellsipllgflmr..nlgcifidR..........ksnkraagslenisellregkl.viiFPEGtrsrs.......gellpfkkGlvrlaakl........gvpivPi 129
                 +++l++++++i+++NHq+++D+   ++ll + n         +n++++a++++ ++pl+ ++++  nl ci+++R          +++     ++   ++ll +g   ++++P+G+r+r+        +  +f++ +v++++ +        ++++ P+
  MMETSP0890-20130614|6887_1 127 KKQLKNGDNVIFLSNHQTEADPSAWSALLDRGNeAwrddefaKNLIMVAGDRVTTDPLAVPFSKarNLLCIYSKRhidnppekkrQKQLHNTRTMGAFAKLLAQGGAcIWVAPSGGRDRPnydtgffDKPAMFDAKSVEMFRLMaskvalfkKTHFWPM 285
                 456677***********************88886267899*9********************9888************977664333333333444455599999999************777665433366666666666665555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|6889_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    7.7   4.7        2.6    7.1   3.2    1.2  1  PF07857.7 CEO family (DUF1632)


Domain annotation for each model (and alignments):
>> PF07857.7  CEO family (DUF1632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.2   0.00019       2.6      40     115 ..     227     304 ..     214     321 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00019
   PF07857.7  40 lvglvvaatlgfpkfePlamlgGalyavgnalavpiieriGlav.giLiWn.tvnclvGWavtRfGlFgikaqvpksd 115
                 l   ++a+ l+ + + P+  lg + +a+  +lavpii   Gla+ ++ +++ t++ +  +a+  +G+   +++  +s 
  MMETSP0890-20130614|6889_1 227 LACAAMALFLAAALLIPVLALGTFCFALLSTLAVPIIICAGLALlPFAVFAyTLHLVYRFAARAYGWERTSSTRSQSA 304
                 333455667888999****************************64788886478888899999999987776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1276.96
//
Query:       MMETSP0890-20130614|6897_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-23   80.5   5.6    4.4e-12   45.1   0.1    2.9  3  PF13475.1 Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.2e-06      0.03      13      49 .]      29      65 ..      23      65 .. 0.83
   2 !   35.3   0.2   3.7e-13   5.1e-09      13      49 .]      54      90 ..      40      90 .. 0.87
   3 !   45.1   0.1   3.2e-16   4.4e-12       1      45 [.      67     111 ..      67     114 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.2e-06
   PF13475.1 13 gsalkylseeLknDkeivlkAvkq.ng.salsyaseeLr 49
                 ++l +++ +++ Dke+ ++ + + +g +al+ya eeL+
  MMETSP0890-20130614|6897_1 29 ENILDFVP-NFT-DKEFWIYLLSRvHGsCALKYATEELK 65
                45777777.999.**********7688789*******97 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 3.7e-13
   PF13475.1 13 gsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                ++alky+ eeLk+D+eiv  Av+++ ++l+ya +e++
  MMETSP0890-20130614|6897_1 54 SCALKYATEELKSDREIVSIAVRNYAYNLEYAADEFK 90
                69******************************99986 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 3.2e-16
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyas 45 
                 DrEiv  av+++ ++l+y+ +e+k+D eivl Avk+ng++l  as
  MMETSP0890-20130614|6897_1  67 DREIVSIAVRNYAYNLEYAADEFKSDHEIVLIAVKKNGYVLQDAS 111
                 9****************************************9888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      563  (0.0411791); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.90
# Mc/sec: 351.47
//
Query:       MMETSP0890-20130614|6896_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   19.9   0.0    0.00033   19.3   0.0    1.2  1  PF03283.8  Pectinacetylesterase
  ------ inclusion threshold ------
      0.086   12.2   0.0       0.18   11.2   0.0    1.5  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF03283.8  Pectinacetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.8e-08   0.00033      90     212 ..     140     271 ..      83     294 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.8e-08
   PF03283.8  90 s..gilsnkaeenpdFynwNrvkirYCdGasfsGdaeeeeekgtkl......yfrGqriveavideLlkkglkka.kqviLsGcSAGGlaallhvdkfrellpktvkvkclsdaGffldvkdvsgeeslesv 212
                 +  g+ s++  e   + +   v i  C G+ + Gd+e++ +++  l       ++G++  ++++d + +++ +   k +++ G+S+G +aa++++ ++ e+++ +   ++++d+   l ++d ++++ l ++
  MMETSP0890-20130614|6896_1 140 DagGVYSRDGFEGNPYSDYTVVSISQCTGDLHLGDTEATFDTAGILgfplsvSYKGKNNAHSAFDWIDRNKADGGiKDLVIHGTSSGSVAAIVYAHELFEKFSPKGIKRVVTDGNPALATSDNKCQSFLTNT 271
                 245999999999999********************99999988655222222689************99977765388999**********************99999999999999999999988877665 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.6e-05      0.18      65     136 ..     217     285 ..     201     291 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.6e-05
                 EEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S--..--HHHHHHHHH------EEEEEETTBSGGG CS
  PF01764.20  65 kivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrv..gnkefaelveeklkkskvlrvvnenDivpr 136
                 ++v+ G S G+  A++ a +l e+ +  +   +v+t G P     + + + ++++  +  + l+ vn  D++p+
  MMETSP0890-20130614|6896_1 217 DLVIHGTSSGSVAAIVYAHELFEKFSP-KGIKRVVTDGNPALatSDNKCQSFLTN--T--QALNKVNGCDVLPK 285
                 68999******************8866.7999********983356666666662..2..57788888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:00.79
# Mc/sec: 1553.08
//
Query:       MMETSP0890-20130614|6898_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-48  165.9   8.0    1.8e-48  165.1   5.6    1.4  1  PF11957.3  THO complex subunit 1 transcription elongation factor


Domain annotation for each model (and alignments):
>> PF11957.3  THO complex subunit 1 transcription elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   5.6   1.3e-52   1.8e-48      25     490 ..      98     642 ..      68     644 .. 0.78

  Alignments for each domain:
  == domain 1    score: 165.1 bits;  conditional E-value: 1.3e-52
   PF11957.3  25 llffLleelldlltldgcrklFdYlesrrerikkksffqavknlvlLRscNelLrrLsrtedtvfcgriliFLsqlfPlsekSnvNlrGefntenvttfd................................eqeeekeeesssesldvdyn...................................................lYpiFwslqeyfsnPtklfskk.efakfkkgleavlqafkeieeelynkikskkaeakkesralnkrkrnesdg.......................eelkssf.......fnpkyltsrdLlelelsDsnFRrqvlvQvlilfdfllsltkkkkaklayktnksvlys.dvlseedkkwikelkkkvekrlkefypkgkkfyrmvehllsreenwvrwKaegcpefekp..vekisvpeaeea........fkKrgapkrllr...ikmGnkelnrLwekkiesgldalkkeerysipslevyleeiaedeleidpanedekeeaaenkavkqWraLRllrkskLaeFdkinektklkglfeesrkkaakekkdpkeekkvekeksehee 490
                  ++ ++e+l+++ ++ + ++ ++ +e+r ++++    f+++k +  LR cN lLrrLsrt+d+ +cgril+FL+ +fP+se+S+vN++Ge + e +t+f+                                +                  +                                                    Y  +w +q+ +++Pt   s++ e +++ k +e++l +f+    +   k++ ++ ++++e   ++ + + e+ +                       e+++s         + +kylt+++Ll ++l D   R q+l+Q++i++++   l                 +  d  +e+  +  + ++++v + +++++p gkk     e+l++re+ w++wK +gcp+fe++   +k +v+  + +        ++K+  +++  r      +  ++  L     +   d++ +  + ++psle+ l    e   ++dp+n +e+e++ ++++    +a Rl+++ + a ++++    +++  +     + +  + + +e++ v+++++++++
  MMETSP0890-20130614|6898_1  98 VPYQIFENLIESSSIVDAEEWWSEIENRKKQLTWPPLFARGKFY-TLRFCNGLLRRLSRTRDAQLCGRILMFLAFAFPISERSAVNIKGEVHSELTTVFEdadtfnakdfikfadddlvqctsnhsnkmdddD------------------DenmedvqdkgnddeeddeegrrpskkkkiavctkmtstqqkkftgieqsyeEYHSLWAVQRWLADPTLALSNDtERESMFKAIEKTLTTFEATPFNDADKNRLETVWRNQE---ARVKPIWEASNpppkyvpvgdqvpkpvnmedvqiEQITSGPfafdsptWTAKYLTDSRLLRVQLRDPILRMQILTQMFIILEYYIYL-----------------KCaDDETETWRSRCTRFRQRVLTAIRSTPPHGKKHALFCEELVRREKFWLKWKKDGCPSFERFpeAQKPKVKRKRSPwevpnlalIRKLDEQREAKRepnLLEEAPDIHALV----QVLADQCSTLYE-QVPSLESHLAAWTE---ADDPENGIEEEYHPKKNQMWRFQAIRLVAQHHSAWLEDMPL-GQIEPAV-ARLTASSSSNNKIEEDTMVDDKNKAENN 642
                 4678****************999********************9.*******************************************************999999999999988777777644433332220..................122333334666777788899999999*******************************************88887****************888777677777777774433...333333222223688999999************9444444346566669**********************************2222.................112345677788889999*********************************************7655555555555577666666666655444443333444444455555....444477776666.99******999999...99******999999999999999******999888888777.5666666.3444455555566666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.45s 00:00:01.68 Elapsed: 00:00:01.21
# Mc/sec: 1756.67
//
Query:       MMETSP0890-20130614|6903_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-44  149.0   0.1    1.6e-43  148.1   0.0    1.5  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    1.2e-17   63.5   0.0    3.6e-17   61.9   0.0    1.9  2  PF03129.15 Anticodon binding domain
    7.3e-09   35.2   0.0    2.4e-08   33.5   0.0    2.0  1  PF02824.16 TGS domain
    3.8e-08   32.9   0.0    7.5e-08   32.0   0.0    1.5  1  PF07973.9  Threonyl and Alanyl tRNA synthetase second additional domain


Domain annotation for each model (and alignments):
>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   4.8e-47   1.6e-43       2     170 ..     389     549 ..     388     552 .. 0.94

  Alignments for each domain:
  == domain 1    score: 148.1 bits;  conditional E-value: 4.8e-47
                 HHHHHHHHHHHHHHCCT-EEEB--SEEEHHHHHH---TTTHHHHCEEBTT---SSEEE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---S.STT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT-GGEEEEEEETTTCHCCHSEEEEEEEEH CS
  PF00587.20   2 knniiqfwrekfieeegflevdtPiltpeevlkasGhvdkfademykvkktgeeelyLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEi.sprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgieklrfrqstsgelahyakdtwdlevwt 170
                  n +iqf+r+++   + ++ev tP +++ +++++sGh  +++++m+ ++ +g e + L+P++++g++l+f+k l+s yr+lPl++a++g ++RnE  +++sGl+RvR+F+q++++if+++++ + e+ ++l+++k +++ +g+ ++++++st+      +k  +d+ +w+
  MMETSP0890-20130614|6903_1 389 YNTLIQFIRDQYW-IREYEEVVTPNVYNFDLWHQSGHALHYKENMFCFEVEGAE-FGLKPMNCPGHCLMFAKTLRS-YRDLPLRYADFGVLHRNELsGALSGLTRVRRFQQDDAHIFCRDDQVEFEVTSTLDFMKYVYDTFGM-SYKLELSTRP-----KKALGDISLWN 549
                 799**********.66********************************998877.********************9.******************************************************************.******9993.....45666666665 PP

>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.5   8.7e+03      16      38 ..     109     131 ..     100     136 .. 0.73
   2 !   61.9   0.0     1e-20   3.6e-17       1      93 [.     677     767 ..     677     768 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHC----EEE--SS CS
  PF03129.15  16 dyakklaeeLreagirvelddrs 38 
                 d ak ++++L +a + + +++ +
  MMETSP0890-20130614|6903_1 109 DIAKGISKKLANAACVARVKYMN 131
                 78999999999998777777733 PP

  == domain 2    score: 61.9 bits;  conditional E-value: 1e-20
                 SEEEEESSSSHHHHHHHHHHHHHHHHC----EEE--SSS----HHHHHHH----EEEEE-HHHHCTTEEEEEETTTTBEEEEETTTHHHHHHH CS
  PF03129.15   1 qvvviplgekaeeledyakklaeeLreagirvelddrsesigkklrradllgipfavvvGekelekgtvtvrdrdtgeqervsleelveklke 93 
                 q++vip+  +  ++ +y ++++ + r+a i ++ d +++++ kk+r a+l++++f++vvG++e ++gtv+vr+r +    +++++++++k+k+
  MMETSP0890-20130614|6903_1 677 QCIVIPVVGH--AHDEYGESIRTKIRAARIFCDCDTSGNTLPKKVRTAQLAQYNFILVVGDEEKSQGTVSVRNRSNIVEGTIPIDDFIAKCKS 767
                 89******94..789************************************************988***********999********99986 PP

>> PF02824.16  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   7.2e-12   2.4e-08       1      59 [.      88     176 ..      88     177 .. 0.97

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 7.2e-12
                 EEEES---EEEE.EETTT-HHHHHHHH-S--GGG--EEEETS.............................SEE-SSS---TTEEEEEE CS
  PF02824.16   1 irvytpdGkvpd.lprgstveDfAykIhrslakkfiyAlVnG.............................qrvglshvLedgDvVeIv 59 
                 i +++pdG++++ +  ++t+ D+A+ I++ la+++++A+V                                 ++l+++Led++ +e++
  MMETSP0890-20130614|6903_1  88 IQITLPDGNIVQgIAMQTTPLDIAKGISKKLANAACVARVKYmnnnrseeniiavedeeeedilknddegtIVWDLTRPLEDDCALELL 176
                 67999*******999*************************99999*************************99*************9986 PP

>> PF07973.9  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.2e-11   7.5e-08       4      44 .]     288     334 ..     285     334 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 2.2e-11
                 EEETTTEEEE------SB-------EEE.......EEEES----EEEE CS
   PF07973.9   4 vsiGdvsvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 ++ G   ++lC+G+H+p Tg ++af+++        ++++++ l+R+y
  MMETSP0890-20130614|6903_1 288 YKSGP-IIDLCMGPHLPDTGRVKAFHVVrassaywLGQADNDALQRVY 334
                 66665.78**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.06u 0.50s 00:00:01.56 Elapsed: 00:00:00.67
# Mc/sec: 2814.83
//
Query:       MMETSP0890-20130614|6909_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.1   3.1      0.023   13.6   2.1    1.3  1  PF09872.4  Uncharacterized protein conserved in archaea (DUF2099)
      0.019   14.6   4.3      0.019   14.6   3.0    2.0  2  PF02520.12 Domain of unknown function DUF148
      0.051   13.0   0.3      0.067   12.6   0.2    1.1  1  PF06473.7  FGF binding protein 1 (FGF-BP1)
       0.15   11.6   0.7       0.35   10.5   0.1    1.7  2  PF11351.3  Protein of unknown function (DUF3154)
       0.18   11.7   1.7       0.53   10.3   1.2    1.8  1  PF14013.1  MT0933-like antitoxin protein
       0.27    9.6   4.0       0.31    9.4   2.8    1.0  1  PF10079.4  Uncharacterized protein conserved in bacteria (DUF2317)
       0.41   10.2   8.3       0.29   10.7   1.5    2.1  2  PF05597.6  Poly(hydroxyalcanoate) granule associated protein (phasin)
        2.2    8.5   7.9        1.4    9.2   2.0    2.4  2  PF05957.8  Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PF09872.4  Uncharacterized protein conserved in archaea (DUF2099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.1   1.3e-05     0.023     131     184 ..      18      71 ..       6     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   PF09872.4 131 iekieekggivldketakidqieGvkkAieegykkiavtvadaedakkirelek 184
                 ++kie++++ + + ++a+i+ +e + +Aie+  k i v++++ e++kk  ++e 
  MMETSP0890-20130614|6909_1  18 LSKIESTKSLLENAKNAQIKATEAIDLAIEKATKPILVSISKEEETKKKTQVEI 71 
                 789*****999999****************************999998666554 PP

>> PF02520.12  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.17   2.9e+02      69      91 ..      17      39 ..       5      49 .. 0.85
   2 ?   14.6   3.0   1.1e-05     0.019      48      93 ..      59     105 ..      56     116 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.17
  PF02520.12 69 klsaIldnkslTrkqkkeaiqal 91
                 ls+I + ksl  ++k+++i+a 
  MMETSP0890-20130614|6909_1 17 ALSKIESTKSLLENAKNAQIKAT 39
                57889999999999999999875 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.1e-05
  PF02520.12  48 kkeeleknvtavisnLs.svdaklsaIldnkslTrkqkkeaiqalkk 93 
                 k+ee +k+++  i +L  +v++++s+I +n ++ ++  ++ i +  +
  MMETSP0890-20130614|6909_1  59 KEEETKKKTQVEIDKLGsKVQNQISEIRQNADKKIASIEATIADADQ 105
                 7899************88*****************999999987665 PP

>> PF06473.7  FGF binding protein 1 (FGF-BP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   3.9e-05     0.067     107     226 ..       9     128 ..       5     130 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.9e-05
   PF06473.7 107 LrkqknaCedkkvLktrvCkkkaaesslkqvtstlegseepekekkspsrsekdkgkeksseekk.lkkdsnekvekakatklpelepaaagvededleeqkklaleyCgeswhslCsFfl 226
                 L+k+ +    +k+  t+   ++a+++++k + ++    e++ k    +s s+++++k+k+++e   l ++ +++ +++  + ++++++ +a+  d+d+ + +     y +  + +l +F+l
  MMETSP0890-20130614|6909_1   9 LKKRAEKLALSKIESTKSLLENAKNAQIKATEAIDLAIEKATKPI-LVSISKEEETKKKTQVEIDkLGSKVQNQISEIRQNADKKIASIEATIADADQLQSRARLSMYTATGFAALAAFLL 128
                 566655555566666666667788888898888888888888766.55555555556666665555**************************************************99986 PP

>> PF11351.3  Protein of unknown function (DUF3154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   1.8e+03       9      34 ..      26      51 ..      19      59 .. 0.72
   2 ?   10.5   0.1    0.0002      0.35      13      78 ..      60     127 ..      48     132 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
   PF11351.3  9 kfipdaeeraqaeaelqkaaleqela 34
                 + ++a++++  + e+  +a+e++ +
  MMETSP0890-20130614|6909_1 26 SLLENAKNAQIKATEAIDLAIEKATK 51
                56778888887778887777776655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0002
   PF11351.3  13 daeeraqaeaelqk..aaleqelaefaaakrgrldrlvaelNrleafvsgwRPalalvtlglllyalm 78 
                 ++e +++ ++e +k  ++ +++++e++++ ++ ++++ a++  +++  s++R ++  +t ++ l+a++
  MMETSP0890-20130614|6909_1  60 EEETKKKTQVEIDKlgSKVQNQISEIRQNADKKIASIEATIADADQLQSRARLSMYTATGFAALAAFL 127
                 555555555555541167788999***99***********************9998888777777765 PP

>> PF14013.1  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   0.00031      0.53       5      50 ..      31      93 ..      21      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00031
   PF14013.1  5 akdlaekhgdkvdqgiDKAgdfvd.................eKtGGKysdkidkgqdaakdal 50
                ak++  k+ + +d +i+KA + +                  +K G K++ +i   ++ a++++
  MMETSP0890-20130614|6909_1 31 AKNAQIKATEAIDLAIEKATKPILvsiskeeetkkktqveiDKLGSKVQNQISEIRQNADKKI 93
                44444455588888888888877799**********************************987 PP

>> PF10079.4  Uncharacterized protein conserved in bacteria (DUF2317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.8   0.00018      0.31     413     512 ..      14     115 ..       2     134 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00018
   PF10079.4 413 eklleekeeseieeafeeakeeleaelkelkeeaak.ldpslegalea..nekkilkqlerLekkllkaerrkheelleqldklqteLfPegalQERvlnily 512
                 ekl + ++ +++++ +e+ak++  ++ +++   ++k + p l ++ ++  ++kk++ ++++L  k+++++ +  +++ +++ +++++++  ++lQ R    +y
  MMETSP0890-20130614|6909_1  14 EKL-ALSKIESTKSLLENAKNAQIKATEAIDLAIEKaTKPILVSISKEeeTKKKTQVEIDKLGSKVQNQISEIRQNADKKIASIEATIADADQLQSRARLSMY 115
                 333.44666777777888887777777777766655144555555554114456677789***********************************99865554 PP

>> PF05597.6  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3      0.03        51      49      90 ..       7      48 ..       2      57 .. 0.75
   2 ?   10.7   1.5   0.00017      0.29      52      94 ..      60     102 ..      53     128 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.03
   PF05597.6 49 eelekktkklaeeqveevkesvkskveevkekaeeqwd.klek 90
                 +l+k+++kla +++e+ k s+ +++++++ ka+e +d  +ek
  MMETSP0890-20130614|6909_1  7 GALKKRAEKLALSKIESTK-SLLENAKNAQIKATEAIDlAIEK 48
                5678899999999999998.77788888888888777755555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00017
   PF05597.6  52 ekktkklaeeqveevkesvkskveevkekaeeqwdklekafde 94 
                 e++tkk+++ +++++ ++v+++++e++++a++++ ++e+ + +
  MMETSP0890-20130614|6909_1  60 EEETKKKTQVEIDKLGSKVQNQISEIRQNADKKIASIEATIAD 102
                 789999999999999999********************98754 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.15   2.6e+02      28      60 ..       5      40 ..       1      53 [. 0.44
   2 ?    9.2   2.0   0.00085       1.4      18      86 ..      71     127 ..      57     151 .. 0.56

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.15
   PF05957.8 28 eaeelReraee....alerarerlrdaedavrerake 60
                ++ +l++rae+    ++e++++ l++a++ ++ +a e
  MMETSP0890-20130614|6909_1  5 NVGALKKRAEKlalsKIESTKSLLENAKN-AQIKATE 40
                55555555554111133334444443333.3333333 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00085
   PF05957.8  18 lksaadeageeaeelReraeealerarerlrdaedavrerakeaaeaadeyVrenPwqavGiAagvGll 86 
                 + + +++ +++++e+R++a++++ +  ++++da d++++ra+  +  a            G Aa +++l
  MMETSP0890-20130614|6909_1  71 IDKLGSKVQNQISEIRQNADKKIASIEATIADA-DQLQSRARLSMYTA-----------TGFAALAAFL 127
                 334445555666666666666666666666653.33555555544444...........4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1929  (0.141091); expected 273.4 (0.02)
Passed bias filter:                      985  (0.0720451); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.48s 00:00:01.08 Elapsed: 00:00:00.74
# Mc/sec: 524.61
//
Query:       MMETSP0890-20130614|6907_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-61  206.7   0.0    2.5e-61  206.5   0.0    1.0  1  PF01255.14 Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
      0.053   12.3   0.0      0.082   11.7   0.0    1.3  1  PF07179.7  SseB protein
      0.061   12.9   0.0       0.11   12.0   0.0    1.4  1  PF06962.7  Putative rRNA methylase


Domain annotation for each model (and alignments):
>> PF01255.14  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.5   0.0   5.4e-65   2.5e-61       1     199 [.      19     215 .]      19     215 .] 0.96

  Alignments for each domain:
  == domain 1    score: 206.5 bits;  conditional E-value: 5.4e-65
  PF01255.14   1 ImDGNrRwakkkgletaeGheaGaealkevleiclelgvkvvtvyafSieNfkRskeEveaLmellkekleelleelellengvkvrvi.GdlsllpedvreaiekaeektknnkkltlnialsYgsreeivdavkkllekvekgkleeeeideetiekklytadlppDlliRtsGeeRLSdFllwqiayaelyfldklW 199
                 ImDGNrR+  k+   + +GheaG ++l +vl++cl+l ++ vt +afS+eN++R ++Ev++Lm  + ++ ee  ++     ++++v++i  + + lp  v +a+++++++t ++++ltlni++sYg+r+e+++avk+ll +  +g+l++++i+e+++e+ l ++ +ppDll+RtsGe+RLS+Fllwqiay+el+fldklW
  MMETSP0890-20130614|6907_1  19 IMDGNRRYGVKRYGAKLQGHEAGGRKLTQVLQWCLDLRIQEVTCFAFSTENWNRDPREVNMLMASFLRQSEEIEKQAM--IKHIRVQCIiSEPESLPVAVFDALTRLQNRTMEFSRLTLNICISYGARSELIQAVKSLLLDITAGQLSPQDITEHHLESRLLLR-SPPDLLLRTSGEQRLSNFLLWQIAYTELVFLDKLW 215
                 9********************************************************************999888777..45799987615669********************************************************************96.789******************************** PP

>> PF07179.7  SseB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05     0.082     121     175 ..      74     132 ..      66     149 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
   PF07179.7 121 Peevalllse....eGsalsaeevlekeaqlllseveeyPaqmvdsltvlfkqrkpvrr 175
                 P+ev++l+++      + + + ++ +   q ++se+e  P+++ d+lt l +++ +  r
  MMETSP0890-20130614|6907_1  74 PREVNMLMASflrqSEEIEKQAMIKHIRVQCIISEPESLPVAVFDALTRLQNRTMEFSR 132
                 8999998764222133444444555567899******************9887766555 PP

>> PF06962.7  Putative rRNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.11      94     137 ..      36      79 ..      33      82 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.5e-05
                 -------HHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEE CS
   PF06962.7  94 aGHeeGkkEkeavlefvkkldqkkfevlkyqfvNqvnapplliv 137
                 +GHe G    + vl+++ +l+ ++++++ +++ N  ++p+ + +
  MMETSP0890-20130614|6907_1  36 QGHEAGGRKLTQVLQWCLDLRIQEVTCFAFSTENWNRDPREVNM 79 
                 6***********************************99998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 677.92
//
Query:       MMETSP0890-20130614|6912_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-31  110.0   0.0    1.5e-31  109.7   0.0    1.2  1  PF13621.1  Cupin-like domain
    1.8e-07   30.5   0.1    0.00012   21.3   0.0    2.6  2  PF08007.7  Cupin superfamily protein
  ------ inclusion threshold ------
      0.039   14.0   0.0       0.51   10.4   0.0    2.3  2  PF02373.17 JmjC domain, hydroxylase
      0.073   12.8   0.6       0.16   11.7   0.4    1.5  1  PF12510.3  Smoothelin cytoskeleton protein


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   4.4e-35   1.5e-31       1     239 [.      11     336 ..      11     337 .] 0.72

  Alignments for each domain:
  == domain 1    score: 109.7 bits;  conditional E-value: 4.4e-35
   PF13621.1   1 peeffreyvakrrPviikgal..kdwpalqkwkd..eylleylkekygdvkvevektpdgvadsfeenedlkkvkfseekmtfkdfldkleagedkrseeylylqnsnlaeefpelr............ed.sdlpfapelfgkk.peavnlWlG..........nsasssslHhDhyeNlycvvsGrKrftLfppsdapklyva.........................sleesgts.................................................vssvdve..npdl.ekfprfkda.kalevelepGevLYlPalWfHeVsssseegvhia 239
                 pe+ff e+vakrrP+ii g++   d+ +l+++    e++ + lk+ +g+ +++vek++ +++  f++++d       +++ +++++ld+l++ +++++++ +yl+ ++lae+ ++              ++ ++ p+ p l++ + p   n+  G          n++ ss+lHhD+++Nl+ ++sGrK f  ++p+ +   +++                         +                                                        +++++    +p++ + +p +++  +   + l+pG++LYlP++W+HeV+s+  +g+h+a
  MMETSP0890-20130614|6912_1  11 PERFFTEFVAKRRPCIISGLAaaHDFGILSECVGsvEKWCAVLKKCAGKARIRVEKRK-QNGRGFGRGSD-------KNQLKLNTLLDHLQDAAHNNRDADYYLTTQPLAEDEEGRPeicgepctslflRTpKSPPLIPTLLSTLiPA--NINAGwavdffkkkkNERNSSGLHHDFHDNLLLLLSGRKLFRCWDPTITSIAKPTggqplriyangrivykatpsvladgR------DsvsakaqtissrldhtddedelerlldaaldtenahrdqsfdtksdpanFATIP-RahSPKDsNVYPDLRHLpSLASFVLKPGDALYLPCGWWHEVTSF--NGFHAA 336
                 789****************66215688888877668889***************8886.56677886644.......8999****************************999877773334444444331135555666666665333..4444466788888877889****************************9998866644444444445444444554444440......0444444455555555555555555555555555555555554444444455554.0457777689*******88899**********************..999987 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0011       3.7     125     159 ..     168     202 ..     164     220 .. 0.81
   2 !   21.3   0.0   3.5e-08   0.00012     175     197 ..     306     328 ..     285     336 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0011
                 -----SEE-SSEEEEEEEE--EEEEEE--SSTT-S CS
   PF08007.7 125 sqgvgpHyDdyDVfllQleGrkrWrvykptvpele 159
                  ++ g H D +D +ll l+Grk  r ++pt  + +
  MMETSP0890-20130614|6912_1 168 RNSSGLHHDFHDNLLLLLSGRKLFRCWDPTITSIA 202
                 567899*********************98766554 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.5e-08
                 SEEEEE----EEEE----EEEEE CS
   PF08007.7 175 vedfvLepGDlLYlPrgviHqgv 197
                    fvL+pGD LYlP g++H+  
  MMETSP0890-20130614|6912_1 306 LASFVLKPGDALYLPCGWWHEVT 328
                 5679****************976 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12     4e+02      23      56 ..      38      70 ..      31     108 .. 0.75
   2 ?   10.4   0.0   0.00015      0.51      81     103 ..     307     329 ..     250     332 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.12
                EEEEEEE-EEEEEEE-TTCHHHHHHHHCH-HH-- CS
  PF02373.17 23 inylhfgapkvWyivpsekkeklekvlskknske 56
                i +  +g+   W++v ++ + k+   ++k+ +++
  MMETSP0890-20130614|6912_1 38 ILSECVGSVEKWCAVLKKCAGKARIRVEKR-KQN 70
                77788899999**********999777777.223 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00015
                 EEEEE----EEEE----EEEEEE CS
  PF02373.17  81 yrfvqkpgefVfvfpgayHsvfn 103
                  +fv kpg++++ + g++H v +
  MMETSP0890-20130614|6912_1 307 ASFVLKPGDALYLPCGWWHEVTS 329
                 689****************9976 PP

>> PF12510.3  Smoothelin cytoskeleton protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   4.7e-05      0.16       6      37 ..     232     263 ..     229     266 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.7e-05
   PF12510.3   6 essesaskrtaeeleeieDeevLekLLetasd 37 
                 +s++++++ ++ +l+   De++Le+LL+ a d
  MMETSP0890-20130614|6912_1 232 DSVSAKAQTISSRLDHTDDEDELERLLDAALD 263
                 57899999********************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:01.59
# Mc/sec: 507.91
//
Query:       MMETSP0890-20130614|6913_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-38  129.1   0.7    4.2e-19   67.9   0.0    4.0  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.2e-05       8      88 ..      11      81 ..       4      88 .. 0.70
   2 !   31.7   0.0   5.9e-12   8.1e-08       8      91 ..      94     174 ..      89     177 .. 0.88
   3 !   67.9   0.0     3e-23   4.2e-19       5      93 ..     185     278 ..     181     281 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.6e-09
                HHH----HHHC....CHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22  8 sllaGaiAgai....aalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetl 88
                ++++G+++ga+     ++v +P+d+vKtrlq           g ++ +++i+        + G+l+ ll  vpa a+ f++ +++
  MMETSP0890-20130614|6913_1 11 EFISGLAGGAAqrlsKDIVLHPIDTVKTRLQ---------RAGSRRLTRRIFAD-----PFDGILAPLLIGVPAGALFFGVKDAT 81
                4555555555411135689************.........66777777777654.....78888888888888888888887766 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 5.9e-12
                 HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkl 91 
                 ++++ a+A    +++  P++++K+r q   ++ + + +gi  a k i+++eG+ gly G + +     p+  +kf +y +lkk 
  MMETSP0890-20130614|6913_1  94 EFTTVAVANGPYWFIRSPTELIKVRQQ--LDGTTINMTGITLA-KDIIQKEGLSGLYVGAIESYAYALPTDLVKFYVYRKLKKS 174
                 6677788888899999***********..66666667777666.*************************************985 PP

  == domain 3    score: 67.9 bits;  conditional E-value: 3e-23
                 HHHHHH----HHHCCHHHCHHHHHHHHHHH.....-SS--GCGS----HHH.......HHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlq.....ksaasasskykgilda.......lkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                 v+k+++ G+iA a a+lvttPldvv+tr +     +s+++ +                +  i++eeG+ +l++G++p+llr  ++ +++f++ye++kk + 
  MMETSP0890-20130614|6913_1 185 VAKKAILGSIASASAQLVTTPLDVVRTRAMekrtpQSTTTTTG-------GdlsiperTLAIIREEGVGALWSGISPRLLRALVSGGLQFGSYEFTKKAFG 278
                 67899*************************5443333333333.......23455666****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.41
# Mc/sec: 484.37
//
Query:       MMETSP0890-20130614|6915_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1235  (0.0903306); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.35s 00:00:01.40 Elapsed: 00:00:01.22
# Mc/sec: 1394.60
//
Query:       MMETSP0890-20130614|6918_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-05   23.5   5.4    7.8e-05   22.1   3.7    1.7  1  PF14295.1 PAN domain
  ------ inclusion threshold ------
          1    9.0   7.8        3.2    7.5   5.2    1.9  2  PF08276.6 PAN-like domain


Domain annotation for each model (and alignments):
>> PF14295.1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   3.7   1.1e-08   7.8e-05      16      51 .]     413     441 ..     399     441 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.1e-08
   PF14295.1  16 dspeaCcaaCaadsnCnawtyvkpavpgangrCwLK 51 
                  +  +Cc aC+ ++nCn++t  +       + C+LK
  MMETSP0890-20130614|6918_1 413 TNVHDCCKACKKNPNCNGFTLAG-------SLCYLK 441
                 5889******************9.......999998 PP

>> PF08276.6  PAN-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.37   2.5e+03       5      34 ..     362     390 ..     360     396 .. 0.79
   2 ?    7.5   5.2   0.00046       3.2      26      61 ..     410     442 ..     389     445 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.37
   PF08276.6   5 gdgFlklknvklPdtsaavvdksisleeCe 34 
                  d+F +l+n     + a+ + +s+++++C+
  MMETSP0890-20130614|6918_1 362 YDRFPQLANHYYATFGAQLF-QSTTQDACQ 390
                 58888888888888877776.589999997 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00046
   PF08276.6  26 ks.isleeCeerClsnCsCtAYayadisggsgCliWt 61 
                 +s +++++C ++C +n +C+ ++ a    gs C+++t
  MMETSP0890-20130614|6918_1 410 TSgTNVHDCCKACKKNPNCNGFTLA----GSLCYLKT 442
                 34499******************99....68898876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:01.09
# Mc/sec: 1028.89
//
Query:       MMETSP0890-20130614|6927_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.3   2.3    0.00023   20.7   0.1    2.2  2  PF00514.18 Armadillo/beta-catenin-like repeat
      0.004   16.1   0.1     0.0043   16.0   0.1    1.0  1  PF04826.8  Armadillo-like


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   4.1e-05      0.28      28      40 ..       9      21 ..       1      22 [. 0.77
   2 !   20.7   0.1   3.4e-08   0.00023       1      40 [.      23      62 ..      23      63 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.1e-05
                HHHHHHHHHHHHH CS
  PF00514.18 28 vqeeAawALsNLa 40
                 +e Aa+AL+NLa
  MMETSP0890-20130614|6927_1  9 AKERAAGALWNLA 21
                6899********9 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3.4e-08
                CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
  PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLa 40
                +++n   + eaGa++pLv+L  sg    +e A+++L N +
  MMETSP0890-20130614|6927_1 23 NDKNQVVIAEAGAIEPLVNLAISGTAIAKEKALGTLKNVS 62
                678888888***************************9987 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   6.3e-07    0.0043      24      87 ..       4      67 ..       1      73 [. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.3e-07
   PF04826.8 24 tedpliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsvnven 87
                +   + +e+a  +l n a+   nq +i e g i  + nl  +  +  kekal +l n+s+ +++
  MMETSP0890-20130614|6927_1  4 SGTAIAKERAAGALWNLAVNDKNQVVIAEAGAIEPLVNLAISGTAIAKEKALGTLKNVSKKADE 67
                556678999************************88888877888999************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.87
# Mc/sec: 209.34
//
Query:       MMETSP0890-20130614|6925_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.064   12.6   2.1       0.22   10.9   0.0    2.8  3  PF04558.10 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
      0.072   12.8   0.1        4.6    7.0   0.1    2.5  1  PF01900.14 Rpp14/Pop5 family
       0.18   11.5   5.9       0.81    9.4   0.1    3.3  4  PF03310.8  Caulimovirus DNA-binding protein
       0.21   11.7   2.1       0.98    9.5   0.1    2.4  2  PF01519.11 Protein of unknown function DUF16
       0.98    9.6   9.7       0.37   10.9   0.8    3.1  3  PF08775.5  ParB family


Domain annotation for each model (and alignments):
>> PF04558.10  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.24   6.6e+02      32      59 ..      29      57 ..      16      86 .. 0.54
   2 ?   10.9   0.0   8.1e-05      0.22      66     115 ..     132     183 ..      84     228 .. 0.87
   3 ?   -0.9   0.1      0.32   8.9e+02      26      44 ..     288     306 ..     267     314 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.24
  PF04558.10 32 sLeeiieea.satsgldkkkgaLLynlat 59
                +++e+++e  +++ ++d++  aL+ n + 
  MMETSP0890-20130614|6925_1 29 KVREAVKEVlGEEVATDENVIALIKNNSF 57
                44444444444455557777777665544 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 8.1e-05
  PF04558.10  66 vphrelvvkyIvdgklkttlqldaAlkylkskge..eevdvaefeeecGVGv 115
                  + r ++++yI++   + ++++da++++lk+k+   ++ +v ++  +cG G 
  MMETSP0890-20130614|6925_1 132 EKIRTFIAEYIIQYIQDLHAKFDACVHFLKEKEPtvDSTEVLKILWKCGSGF 183
                 46799***************************99677778888888999885 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.32
  PF04558.10  26 nkkvsasLeeiieeasats 44 
                  k v ++++e++ee++a++
  MMETSP0890-20130614|6925_1 288 RKMVKNRIKELLEEQRANA 306
                 2333344555555554444 PP

>> PF01900.14  Rpp14/Pop5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0017       4.6      14      40 ..      17      43 ..       3     144 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0017
  PF01900.14 14 sseelspkellkaireavkelfGdvga 40
                 ++e++ + + k +reavke++G+  a
  MMETSP0890-20130614|6925_1 17 RKNEITIAAFCKKVREAVKEVLGEEVA 43
                456666666777777777777776544 PP

>> PF03310.8  Caulimovirus DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.24   6.5e+02       4      40 ..      30      66 ..      27      98 .. 0.74
   2 ?    2.9   0.0      0.03        83      15      58 ..     114     157 ..     102     176 .. 0.79
   3 ?   -1.9   0.0       0.9   2.5e+03      61      75 ..     214     227 ..     158     240 .. 0.61
   4 ?    9.4   0.1    0.0003      0.81       6      40 ..     279     313 ..     274     317 .] 0.84

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH CS
   PF03310.8  4 iaseieevlsdqkkieaeikaileklgstkpekesle 40
                + + ++evl +   +++++ a++++++  k  k+++ 
  MMETSP0890-20130614|6925_1 30 VREAVKEVLGEEVATDENVIALIKNNSFVKASKDNIS 66
                5567888888888899999999988888887777764 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHC-T CS
   PF03310.8  15 qkkieaeikaileklgstkpekesleevaakiikdltkkidece 58 
                   ki a+i+ai +     +++++ + e   + i+dl  k d c 
  MMETSP0890-20130614|6925_1 114 VSKIIAKIEAIDNAQPGPEKIRTFIAEYIIQYIQDLHAKFDACV 157
                 4677888888888888888889999999999999*****99994 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.9
                 HHHHHH--------- CS
   PF03310.8  61 keiveildkkqdkqi 75 
                 ++ive+  kk +  i
  MMETSP0890-20130614|6925_1 214 QKIVEARAKK-KASI 227
                 4666666652.2333 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHHHHHHHHHHH------HHHHHH CS
   PF03310.8   6 seieevlsdqkkieaeikaileklgstkpekesle 40 
                  ei+ev+  +k +++ ik++le   ++ +  +s+e
  MMETSP0890-20130614|6925_1 279 PEIKEVKYTRKMVKNRIKELLEEQRANAEAPSSME 313
                 59********************9888777666666 PP

>> PF01519.11  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.16   4.4e+02      32      93 ..       9      81 ..       6      88 .. 0.53
   2 ?    9.5   0.1   0.00036      0.98      30      82 ..     257     308 ..     249     316 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.16
  PF01519.11 32 KdandqrltkiEtkvdqlaqgeqikkltetvekqgeqikelqveqk...............aqgetlqlilktleki 93
                Kd+     +k E +++  a  +++++ ++ v   ge++   +  +                ++++ l +i  tl++ 
  MMETSP0890-20130614|6925_1  9 KDSVHSYCRKNEITIA--AFCKKVREAVKEV--LGEEVATDENVIAliknnsfvkaskdniSVEHLLTIIRDTLQNA 81
                5777777777777777..4455555543333..22222221111112233344555555557777777777777765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00036
  PF01519.11  30 eFK.dandqrltkiEtkvdqlaqgeqikkltetvekqgeqikelqveqkaqget 82 
                 +F  d+n +++t i +k++   q  +ik+++ t +  +++ikel +eq a  e 
  MMETSP0890-20130614|6925_1 257 DFDpDQNTRKVTEIHEKLK--GQYPEIKEVKYTRKMVKNRIKELLEEQRANAEA 308
                 677789*************..99999**999999999**********9987665 PP

>> PF08775.5  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   0.00013      0.37      18      98 ..      12      90 ..       8      96 .. 0.80
   2 ?    0.2   0.0      0.29     8e+02      29      70 ..     110     152 ..      88     161 .. 0.78
   3 ?    2.1   0.4     0.074     2e+02      25      74 ..     263     313 ..     258     317 .] 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
   PF08775.5 18 vseelekkklsldelvekvkeeikdieselsedeakkeilklikkelkalkekkkkdkakveeLaefddkdkfaRkkkdkk 98
                v+ +++k+++++  + +kv+e++k++    +e    +++++lik+++  + +k +  + +  ++++ + ++ f +   d k
  MMETSP0890-20130614|6925_1 12 VHSYCRKNEITIAAFCKKVREAVKEVLG--EEVATDENVIALIKNNSFVKASKDNISVEHLLTIIRDTLQNAFKKNNFDLK 90
                7889***********************9..66667789*******999999888877777776666666666666555555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.29
   PF08775.5  29 ldelvekvkeeikdies.elsedeakkeilklikkelkalkek 70 
                 + elv k+ ++i++i+  +  +++ +  i + i +++++l++k
  MMETSP0890-20130614|6925_1 110 VLELVSKIIAKIEAIDNaQPGPEKIRTFIAEYIIQYIQDLHAK 152
                 6789999999999999866666777777888888887777665 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.074
   PF08775.5  25 kklsldelvekvkeeikdies.elsedeakkeilklikkelkalkekkkkd 74 
                 +  +++e+ ek+k +  +i+  ++ ++ +k++i +l++++ ++++++++ +
  MMETSP0890-20130614|6925_1 263 NTRKVTEIHEKLKGQYPEIKEvKYTRKMVKNRIKELLEEQRANAEAPSSME 313
                 555778888888888888888888999999999999999888888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       999  (0.073069); expected 273.4 (0.02)
Passed bias filter:                      578  (0.0422762); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:00.72
# Mc/sec: 1055.06
//
Query:       MMETSP0890-20130614|6926_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-07   29.9   0.0    4.5e-07   29.0   0.0    1.5  1  PF00018.23 SH3 domain
    1.2e-06   28.0   0.0    4.6e-06   26.1   0.0    2.1  2  PF00627.26 UBA/TS-N domain
     0.0032   17.3   1.2      0.011   15.6   0.8    1.9  1  PF06193.6  Orthopoxvirus A5L protein-like
     0.0056   16.7   0.0      0.014   15.4   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
  ------ inclusion threshold ------
       0.03   14.4   0.0      0.067   13.2   0.0    1.6  1  PF00169.24 PH domain
      0.063   12.6   0.0       0.13   11.6   0.0    1.5  1  PF07653.12 Variant SH3 domain
      0.073   13.0  12.3       0.04   13.8   0.6    3.1  2  PF14346.1  Domain of unknown function (DUF4398)


Domain annotation for each model (and alignments):
>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.3e-10   4.5e-07       1      48 []     665     711 ..     665     711 .. 0.97

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.3e-10
                 EESS-BE-SSTTS-EB-TT-EEEEEEESSSSEEEEEETTTTB---EEG CS
  PF00018.23   1 iAlYDYearesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +A Y + a ++  Ls  ++++++v+e  +dgW ++ +  + ++Gl+Ps
  MMETSP0890-20130614|6926_1 665 KAAYAFSAMDTWQLSVAQDEELEVVEILDDGWADVVNAQQ-QRGLVPS 711
                 799***********************************95.******8 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.4e-09   4.6e-06       1      36 [.     112     147 ..     112     147 .. 0.97
   2 ?   -3.0   0.0       3.4   6.6e+03      15      26 ..     505     516 ..     504     517 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.4e-09
                 CTHHHHHHHHH----HHHHHHHHHHTTTSHHHHHHH CS
  PF00627.26   1 ideeaiqqLreMGfsreeakkALratnnnvErAvey 36 
                 i ee++ +L eMGf++  a+ AL+ t + +E A+e+
  MMETSP0890-20130614|6926_1 112 IPEEIVSKLEEMGFTKKLAISALEHTSGKLEDAAEW 147
                 579********************************9 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
                 -HHHHHHHHHHT CS
  PF00627.26  15 sreeakkALrat 26 
                 ++  +++AL  t
  MMETSP0890-20130614|6926_1 505 DNAKVRDALAQT 516
                 67799****877 PP

>> PF06193.6  Orthopoxvirus A5L protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.8   5.5e-06     0.011      68     154 ..     414     498 ..     370     505 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.5e-06
   PF06193.6  68 qpiprqqtntssdvsnlfdwlsadtn...kksssllpaltpsnsvqd..iikefnsvkkdmkqLqaetndLvt.dvsdareyTrraidqilkd 154
                 +pip       s+++ + d l  d+    +++s   p + p  + qd  + k +++v+k  +qL +  + L + ++s+ar+  rra+d +l +
  MMETSP0890-20130614|6926_1 414 APIP-------STTAPVVDLLCLDDIpdvDEQSVTAPPQVPNRQQQDtvVAKALDDVQKAQQQLERSEQFLNSgNISQARNEARRAVDTLL-Q 498
                 3333.......333444444444433212455555599999999999555699***********99888886559***************9.5 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.9e-06     0.014       5      55 ..     278     340 ..     274     360 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.9e-06
                 ETTTTSH---EEEESSTTS..............SSSEEEEESTTTHHTTTTSBSTTCEEEEETTE CS
  PF00595.19   5 ekekrgglGfslkggsdkr..............dkgifvsevvpggaaeagglkeGDkIlsvNgv 55 
                  + ++ ++Gf +k   d                d+  ++++v+++  a+a+gl++GD I++v+++
  MMETSP0890-20130614|6926_1 278 FAAGGRPRGFVVKISHDGTlrcacnfaasmlavDPQGIITQVQRD--AKAAGLRIGDHIIKVGDE 340
                 555788999999999998899***********************9..67778**********984 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-05     0.067       5      99 ..     180     277 ..     176     280 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.4e-05
                 EEEEEEE....TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE.EEEEEEETTSSCTTSSSSEEEEEETTT........CEEEEEESSHHHHHHHHHHH CS
  PF00169.24   5 Gyllkks....ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc.tvkkasstkfalqkesnnyfeitfkdv........esyllsaeseeerkrWvqal 99 
                 G l+k+      l  +w+ r f  ++++L+y           p ++i+l +c  ++  ++        + ++f++   ++        ++ +l ae+++ + +W+ al
  MMETSP0890-20130614|6926_1 180 GPLYKMAssksVLGARWQSRAFEIRNGVLSYSSGNG-----PPSKTINLWQCyALRSYKKV-----GGKLHCFVVYASEEvttnqsshSKMYLAAEDDKTVAEWLIAL 277
                 6666666666678899**************998886.....8**********999999998.....69********99999************************998 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.6e-05      0.13      16      54 ..     678     716 ..     652     717 .] 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.6e-05
                 --B----EEEEE.E-S--.--BEEEE.-TT---B--HHHHH CS
  PF07653.12  16 LslkkGDvikvlgskesd.gwweges.gGrvGlfPsslVee 54 
                 Ls+ +++ ++v+  ++ d gw  + + + ++Gl+Pss+V +
  MMETSP0890-20130614|6926_1 678 LSVAQDEELEVV--EILDdGWADVVNaQQQRGLVPSSYVTP 716
                 666677767777..54453888888899**********976 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   3.2     0.074   1.5e+02      55      91 ..      73     109 ..      42     122 .. 0.69
   2 ?   13.8   0.6     2e-05      0.04      40      74 ..     461     495 ..     436     517 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.074
   PF14346.1  55 alaegkyeeArrlaeqAeadaelAeakaeaakaqaal 91 
                 a +e++ +    + e A+ada lA a+ae++k+++ +
  MMETSP0890-20130614|6926_1  73 AADEARLAATAQKRETAAADAALAVALAEEDKEKNGR 109
                 4444444455555566666666666666666666555 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2e-05
   PF14346.1  40 veLeeAkekLaaAkaalaegkyeeArrlaeqAead 74 
                  + ++A+++L++ ++ l++g+ ++Ar++a +A + 
  MMETSP0890-20130614|6926_1 461 DDVQKAQQQLERSEQFLNSGNISQARNEARRAVDT 495
                 3889****************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       775  (0.0566852); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.19u 0.38s 00:00:01.56 Elapsed: 00:00:01.00
# Mc/sec: 1718.19
//
Query:       MMETSP0890-20130614|6920_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-24   86.7   0.0    1.8e-24   86.2   0.0    1.3  1  PF00069.20 Protein kinase domain
    1.7e-10   40.3   0.0    2.5e-10   39.7   0.0    1.2  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   2.6e-28   1.8e-24       6     260 .]     365     613 ..     360     613 .. 0.85

  Alignments for each domain:
  == domain 1    score: 86.2 bits;  conditional E-value: 2.6e-28
                 EEE----EEEEEEEE..TTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHH..H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   6 klGsGsfGkVykakk..kktgkkvAvKilkkeeekskkektavr.Elkilkkl..sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 +lGs +  +V  a +  +++ + + vK+  k+e+ + +  +++  E + l  +  s++  v+l+++f++ + lylvl++  gg+l+ ll     +s +++++++ +++ +l+++H+ g++HrD+ ++N  ld +g++ ++ F +a +l   ++++l+t++g    +APE ++    y+ +vD+W+lG +  el+ +  pf +e  ++ + +i+   +k  ++     + + +e   ++++ll+  p++ +++ ei khp +
  MMETSP0890-20130614|6920_1 365 RLGSFNATTVSIALNslQDDHRYYEVKTTLKHEAARLQMSKRLIeERRALSLVsgSSSLCVQLVSAFTDANFLYLVLDFPHGGTLAGLLP----ISPNTARFYLASLAMALSHCHDSGVVHRDVRTQNAKLDIHGYCVLSNFHCAAVLsDIPNQRLSTICGV---LAPECMN--GSYDYAVDWWALGRLALELVAR-SPFGDE--QNYSVIIDAANGKLPKSTTACLKATGSEYAGIVTSLLAARPKRLSSLFEIQKHPAF 613
                 555556666644443116677789999988888777665554444888888884347889**************************7776....***************************************************9999999********96...7****99..88999**************995.788877..57888888888888888888888888***************************965 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   3.7e-14   2.5e-10       7     231 ..     366     579 ..     360     606 .. 0.80

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 3.7e-14
                 E-------EEEEEEETTTTSSEEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT..-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSB CS
  PF07714.12   7 lGeGafGkVvegtlkgekekkevkVavKtl..kesaeeeekeefleeakimkkl..khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcp 231
                 lG+ + ++V  +  + +++++     vKt   +e a+ + +++++ee ++++ +  + +  v+l+ ++t+++ l++v+++ +gG+L  +L  +       ++   + + +a ++++ ++  +vHrd++++N  l+ +  + +s+f  a  +  +d    +++  +    +apE++ ++++  + D W+ G l  E++   +sp+ + +n +v+    +gk  +  + c 
  MMETSP0890-20130614|6920_1 366 LGSFNATTVSIALNSLQDDHRY--YEVKTTlkHEAARLQMSKRLIEERRALSLVsgSSSLCVQLVSAFTDANFLYLVLDFPHGGTLAGLLPIS------PNTARFYLASLAMALSHCHDSGVVHRDVRTQNAKLDIHGYCVLSNFHCAAVL--SD--IPNQRLSTICGVLAPECM-NGSYDYAVDWWALGRLALELVA--RSPFGDEQNYSVIIDAANGKLPKSTTACL 579
                 5555566666665553344444..445555425566677799*********9997678889********9999*****************987......55556678899**************************************999..23..3334444555669***97.578*****************99..67*****9999998888887777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:01.12
# Mc/sec: 1332.97
//
Query:       MMETSP0890-20130614|6929_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.53    9.8   7.1       0.54    9.7   4.9    1.0  1  PF10278.4 Mediator of RNA pol II transcription subunit 19
       0.61    9.6   7.7       0.63    9.6   5.3    1.0  1  PF10721.4 Protein of unknown function (DUF2514)
        1.5    8.1   8.8        1.5    8.1   6.1    1.0  1  PF08597.5 Translation initiation factor eIF3 subunit
        2.4    7.6   5.2        2.5    7.5   3.6    1.1  1  PF08561.5 Mitochondrial ribosomal protein L37
        2.8    6.0   9.4          3    5.9   6.5    1.0  1  PF05793.7 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.9    0.0002      0.54     134     164 ..       4      34 ..       1      39 [. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
   PF10278.4 134 seteegfekkkkkkkkedDkerkkkkkekkk 164
                 ++ ee  e++kkk+k   D +rk + ke+++
  MMETSP0890-20130614|6929_1   4 EDEEEEGEQRKKKRKATADAQRKERIKEQER 34 
                 3345566889999999*********999875 PP

>> PF10721.4  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.3   0.00023      0.63      30      62 ..       5      37 ..       1      40 [. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00023
   PF10721.4 30 waqkwaerdaadaqaevaaetaaRaeeqrRqaa 62
                ++++  e+++++++a++ a++++R +eq+R aa
  MMETSP0890-20130614|6929_1  5 DEEEEGEQRKKKRKATADAQRKERIKEQERFAA 37
                44444566666899****************876 PP

>> PF08597.5  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.1   0.00056       1.5      38      72 ..       1      35 [.       1      41 [. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00056
   PF08597.5 38 deeeeeekekekakkaakakakkelkakieekeka 72
                deee+ee+e e++kk+ ka a ++ k++i+e+e+ 
  MMETSP0890-20130614|6929_1  1 DEEEDEEEEGEQRKKKRKATADAQRKERIKEQERF 35
                68889999999999999999999999999988875 PP

>> PF08561.5  Mitochondrial ribosomal protein L37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.6   0.00093       2.5      51      83 ..       3      36 ..       1      38 [. 0.58

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00093
   PF08561.5 51 eaeadkaaekr.eerrkalrkarkaaIkenNfls 83
                e++++++ e+r ++r+  + ++rk++Ike+ + +
  MMETSP0890-20130614|6929_1  3 EEDEEEEGEQRkKKRKATADAQRKERIKEQERFA 36
                33333344445055555566789999**998765 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.5    0.0011         3     324     355 ..       2      33 ..       1      37 [. 0.73

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX CS
   PF05793.7 324 eeekkeeegklskkkkkakklkkkkkekdkkd 355
                 eee++eeeg+  kkk+ka  + ++k+++++++
  MMETSP0890-20130614|6929_1   2 EEEDEEEEGEQRKKKRKATADAQRKERIKEQE 33 
                 66666778888888888888888888886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1166  (0.0852838); expected 273.4 (0.02)
Passed bias filter:                      831  (0.0607812); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.47s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 145.87
//
Query:       MMETSP0890-20130614|6930_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-17   62.4   0.0    3.9e-17   61.5   0.0    1.5  1  PF01302.20 CAP-Gly domain
    8.1e-07   28.4  10.0    0.00069   19.0   0.6    4.2  4  PF12799.2  Leucine Rich repeats (2 copies)
    5.6e-05   22.6   3.3      0.015   14.9   0.2    3.5  3  PF13855.1  Leucine rich repeat
    0.00044   19.9   3.3        1.1    9.3   0.0    4.7  5  PF13516.1  Leucine Rich repeat
     0.0028   17.3   4.8         18    5.7   0.0    4.7  4  PF00560.28 Leucine Rich Repeat
      0.004   17.0   0.3         96    3.7   0.0    5.6  6  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF01302.20  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   1.7e-20   3.9e-17       8      68 ..       4      74 ..       1      75 [. 0.80

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 1.7e-20
                SSSS-B----------S.S--..---B----.SS---------......-----S--.-TT----B-GGGE CS
  PF01302.20  8 dpekerrGtvryvGpvptfks..giwvGvel.deprGkndGsv......dGvrYFec.kpkrGvFvkperv 68
                 ++++ rGt+ry+Gpv t k+   iw+G+e+ de+rGk+dG v         rYF+c + ++G+Fvkp+++
  MMETSP0890-20130614|6930_1  4 RDDNGSRGTIRYIGPVLTSKQedAIWIGIEWdDETRGKHDGAVideksgASHRYFQCaHANSGSFVKPKKI 74
                457899**********976664448******999********94433223369****66*********986 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.6     3e-07   0.00069       1      37 [.     162     201 ..     162     210 .. 0.83
   2 ?   -0.9   0.0      0.53   1.2e+03      20      37 ..     235     253 ..     214     269 .. 0.70
   3 !   11.1   0.1   9.3e-05      0.21       3      40 ..     273     313 ..     273     323 .. 0.81
   4 ?    1.5   0.1     0.096   2.2e+02      13      30 ..     357     380 ..     343     380 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3e-07
   PF12799.2   1 tnLevLdLsnNnIkd...lppelanLpnLktLnLsnNpis 37 
                 +nL +LdL+ N  ++   ++  + +Lp L+ L++s+N++ 
  MMETSP0890-20130614|6930_1 162 ENLITLDLQCNLFSSwqqIDDIIQQLPFLEALDISGNQLG 201
                 69***********9844467769***************84 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.53
   PF12799.2  20 lanLpnLktLnLsnN.pis 37 
                 + n p L+ L++++  pi+
  MMETSP0890-20130614|6930_1 235 ITNAPHLEDLHVAGHaPIC 253
                 5677899999998643776 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 9.3e-05
   PF12799.2   3 LevLdLsnNnIkd.lppelan.LpnLktLnLsnNp.isdls 40 
                 L++Ld++ + + +   + l n LpnL++L+ s Np ++ ls
  MMETSP0890-20130614|6930_1 273 LRMLDIAACGLDEhFAANLPNlLPNLEELHASQNPsLQRLS 313
                 899999999999886666999559**********8566655 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.096
   PF12799.2  13 Ikdlppe......lanLpnLktLn 30 
                 +++++p+      +a+LpnL +Ln
  MMETSP0890-20130614|6930_1 357 VTNIGPSetraflIARLPNLIQLN 380
                 57788766788879******9997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   6.7e-06     0.015      24      61 .]     161     200 ..     155     213 .. 0.60
   2 !    5.5   0.1    0.0058        13      20      59 ..     266     306 ..     263     307 .. 0.85
   3 ?    0.3   0.0      0.23   5.3e+02       1      31 [.     307     339 ..     307     348 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.7e-06
   PF13855.1  24 lsnLkvLdLsgnnlk...sispeafkgLpsLreLnLsgNrl 61 
                 l+nL +LdL++n  +    i ++++++Lp L+ L++sgN+l
  MMETSP0890-20130614|6930_1 161 LENLITLDLQCNLFSswqQI-DDIIQQLPFLEALDISGNQL 200
                 55666666665555422122.34556666666666666655 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0058
   PF13855.1  20 aFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsgN 59 
                 ++++   L+ Ld+  + l +++ +++ + Lp+L+eL  s+N
  MMETSP0890-20130614|6930_1 266 TLENIAPLRMLDIAACGLdEHFAANLPNLLPNLEELHASQN 306
                 7888889999***955554899999999********99998 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.23
   PF13855.1   1 pnLkeLdLsnNrlkvipdga..FkglsnLkvLd 31 
                 p+L++L  +++++++++  +  F ++s+  +L+
  MMETSP0890-20130614|6930_1 307 PSLQRLSATFSEITTLAVAScgFVQWSHVDELN 339
                 688899999999988854431144556666665 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3     0.058   1.3e+02       2      15 ..     162     175 ..     161     180 .. 0.86
   2 !    9.3   0.0    0.0005       1.1       1      15 [.     187     201 ..     187     212 .. 0.90
   3 ?   -2.9   0.0       4.5     1e+04       2       9 ..     239     246 ..     238     252 .. 0.83
   4 ?   -1.9   0.0       2.1   4.8e+03       7      22 ..     276     291 ..     273     293 .. 0.78
   5 ?    3.8   0.0      0.03        69       1      13 [.     295     307 ..     295     318 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.058
   PF13516.1   2 knLtsLdLsnNqig 15 
                  nL +LdL+ N ++
  MMETSP0890-20130614|6930_1 162 ENLITLDLQCNLFS 175
                 69*******99765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0005
   PF13516.1   1 lknLtsLdLsnNqig 15 
                 l++L+ Ld+s+Nq+g
  MMETSP0890-20130614|6930_1 187 LPFLEALDISGNQLG 201
                 699**********98 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 4.5
   PF13516.1   2 knLtsLdL 9  
                 ++L++L++
  MMETSP0890-20130614|6930_1 239 PHLEDLHV 246
                 89***997 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 2.1
   PF13516.1   7 LdLsnNqigdeGlsaL 22 
                 Ld+  ++++  ++ +L
  MMETSP0890-20130614|6930_1 276 LDIAACGLDEHFAANL 291
                 99999*9998877766 PP

  == domain 5    score: 3.8 bits;  conditional E-value: 0.03
   PF13516.1   1 lknLtsLdLsnNq 13 
                 l+nL++L+ s+N+
  MMETSP0890-20130614|6930_1 295 LPNLEELHASQNP 307
                 79********997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.014        32       1      15 [.     163     180 ..     163     188 .. 0.78
   2 !    5.7   0.0     0.008        18       2      13 ..     190     201 ..     189     216 .. 0.84
   3 ?   -0.2   0.0      0.67   1.5e+03       2      21 ..     273     293 ..     272     295 .. 0.76
   4 ?    4.4   0.0     0.021        47       1      20 [.     297     317 ..     297     319 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.014
                 TESEEEETSSBCBC...H CS
  PF00560.28   1 nLeeLdLsgNnlts...l 15 
                 nL +LdL++N ++s   +
  MMETSP0890-20130614|6930_1 163 NLITLDLQCNLFSSwqqI 180
                 89********99975554 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.008
                 ESEEEETSSBCB CS
  PF00560.28   2 LeeLdLsgNnlt 13 
                 Le Ld+sgN+l 
  MMETSP0890-20130614|6930_1 190 LEALDISGNQLG 201
                 899******996 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.67
                 ESEEEETSSBCB.CHHHHHHH CS
  PF00560.28   2 LeeLdLsgNnlt.slppslsn 21 
                 L+ Ld+  + l  ++  +l n
  MMETSP0890-20130614|6930_1 273 LRMLDIAACGLDeHFAANLPN 293
                 899*******99666555555 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.021
                 TESEEEETSS.BCBCHHHHHH CS
  PF00560.28   1 nLeeLdLsgN.nltslppsls 20 
                 nLeeL+ s N +l+ l+  +s
  MMETSP0890-20130614|6930_1 297 NLEELHASQNpSLQRLSATFS 317
                 8************99987765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.73   1.7e+03       2      11 ..     163     172 ..     162     188 .. 0.69
   2 ?    3.7   0.0     0.042        96       3      14 ..     190     201 ..     188     206 .. 0.88
   3 ?   -0.5   0.0         1   2.4e+03       1      10 [.     239     248 ..     239     257 .. 0.83
   4 ?   -0.3   0.0      0.93   2.1e+03       3      15 ..     273     285 ..     273     292 .. 0.81
   5 ?    3.5   0.0     0.049   1.1e+02       1      16 [.     296     312 ..     296     316 .. 0.88
   6 ?   -1.7   0.0       2.8   6.3e+03       4      14 ..     320     330 ..     317     333 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.73
   PF13504.1   2 nLkeLdLsgn 11 
                 nL +LdL +n
  MMETSP0890-20130614|6930_1 163 NLITLDLQCN 172
                 8999***887 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.042
   PF13504.1   3 LkeLdLsgnrLt 14 
                 L+ Ld+sgn+L 
  MMETSP0890-20130614|6930_1 190 LEALDISGNQLG 201
                 889*******85 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1
   PF13504.1   1 pnLkeLdLsg 10 
                 p+L++L+++g
  MMETSP0890-20130614|6930_1 239 PHLEDLHVAG 248
                 79*****987 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.93
   PF13504.1   3 LkeLdLsgnrLts 15 
                 L+ Ld++ ++L++
  MMETSP0890-20130614|6930_1 273 LRMLDIAACGLDE 285
                 788******9974 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.049
   PF13504.1   1 pnLkeLdLsgnr.LtsL 16 
                 pnL+eL+ s n+ L+ L
  MMETSP0890-20130614|6930_1 296 PNLEELHASQNPsLQRL 312
                 79*********888766 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 2.8
   PF13504.1   4 keLdLsgnrLt 14 
                 ++L ++++++ 
  MMETSP0890-20130614|6930_1 320 TTLAVASCGFV 330
                 78999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.70
# Mc/sec: 1862.31
//
Query:       MMETSP0890-20130614|6932_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    8.8  24.0        1.1    9.1   0.4    4.6  4  PF05570.6 Circovirus protein of unknown function (DUF765)


Domain annotation for each model (and alignments):
>> PF05570.6  Circovirus protein of unknown function (DUF765)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4     8e-05       1.1       7      21 ..       3      17 ..       2      19 .. 0.89
   2 ?    5.4   2.2    0.0011        16       7      22 ..      24      39 ..      18      41 .. 0.73
   3 ?    4.8   1.1    0.0018        24       3      22 ..      41      60 ..      39      64 .. 0.74
   4 ?    2.5   0.2    0.0094   1.3e+02      10      18 ..      84      92 ..      77      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 8e-05
   PF05570.6  7 ASPAPSDILSsvPQS 21
                A  AP D LSs+P S
  MMETSP0890-20130614|6932_1  3 AAAAPGDYLSSLPSS 17
                677**********88 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0011
   PF05570.6  7 ASPAPSDILSsvPQSe 22
                A   P D LSs+P S+
  MMETSP0890-20130614|6932_1 24 AAAPPGDYLSSLPSSD 39
                444589*******996 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0018
   PF05570.6  3 SSTPASPAPSDILSsvPQSe 22
                S   A   P D LSs+P  +
  MMETSP0890-20130614|6932_1 41 STSKAVAPPMDYLSSLPSTQ 60
                5555666699*******877 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.0094
   PF05570.6 10 APSDILSsv 18
                AP D LSs+
  MMETSP0890-20130614|6932_1 84 APGDYLSSI 92
                9******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 603.37
//
Query:       MMETSP0890-20130614|6933_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.89
# Mc/sec: 228.87
//
Query:       MMETSP0890-20130614|6934_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-44  150.5  45.3    5.9e-34  116.9  13.3    2.9  3  PF01061.19 ABC-2 type transporter
    4.7e-07   30.0   0.0    1.4e-06   28.5   0.0    1.8  2  PF00005.22 ABC transporter
      3e-05   24.0   0.0      0.047   13.5   0.0    2.6  2  PF13304.1  AAA domain
     0.0011   17.9   7.5     0.0011   17.9   5.2    2.8  2  PF12698.2  ABC-2 family transporter protein
     0.0027   17.1   1.6     0.0059   15.9   1.1    1.6  1  PF13555.1  P-loop containing region of AAA domain
      0.006   15.6   0.1      0.012   14.6   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.026   13.8   0.3       0.13   11.5   0.1    2.0  2  PF13481.1  AAA domain
      0.052   12.8   0.8        0.1   11.9   0.5    1.4  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.064   12.6   0.2       0.15   11.4   0.1    1.5  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.091   12.7   0.0       0.19   11.7   0.0    1.5  1  PF13401.1  AAA domain
      0.099   11.5   0.0        2.2    7.1   0.0    2.5  3  PF13175.1  AAA ATPase domain
       0.16   12.1   0.4       0.32   11.1   0.3    1.4  1  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   6.0     1e-15   1.2e-12     133     209 .]       2      78 ..       1      78 [. 0.93
   2 ?   -2.3   1.3       1.6   1.8e+03     131     150 ..     125     144 ..     111     151 .. 0.48
   3 !  116.9  13.3   5.2e-37   5.9e-34       2     209 .]     531     745 ..     530     745 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1e-15
  PF01061.19 133 lllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrsnll 209
                 +l+l+l+++++s ++ ++salap+++ a+ l+++ +l+++l+sG++i ++s+p+ ++w+y+l+P++ a  a ++n++
  MMETSP0890-20130614|6934_1   2 ILILILISFAMSQWFAALSALAPDAQSAQPLSGMSVLLFVLFSGFVIQRTSIPPGWKWMYWLSPISLAWRANVINEF 78 
                 799*************************************************6578**********99888777765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.6
  PF01061.19 131 lflllllltalfasslglli 150
                 +++l+++++++++s l+l++
  MMETSP0890-20130614|6934_1 125 FYILIAIVVLIAYSILSLFL 144
                 23444444444444444433 PP

  == domain 3    score: 116.9 bits;  conditional E-value: 5.2e-37
  PF01061.19   2 qikallkreflqryrdpslgllwkliqpllmalvfgtvfgn.....lgnssgglqrpgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldls...fflflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrsnll 209
                 q+++llkr+f++++r ps++ +++ +  +l+a +fg++fg+     ++  s +l+r+gl+f  ++fl+++ ++++   + +er++++re ++++ys+ ++ ++  l+e p+ l +++i + i + +v l++     f+++ +++l++ f+++l++++ +++p++  a++l++ +l+++ + sG+ i + ++++ ++++y+l+P+ ya+e+++ +++
  MMETSP0890-20130614|6934_1 531 QFRILLKRQFINYWRGPSYN-VARGMVSILVAAIFGSCFGQdrpeaVQLYSRVLSRVGLFFLDTFFLGIIYFSAALGQMSKERESFYRESAARMYSPLPYSISFGLSETPYLLSFSFIHTGILFAIVDLYPGaerYFFYYAYFALYVSFTTFLAQALVVIMPDQGSAQTLGTSFLQVTSIVSGFSITPGNISSAWIFLYWLSPIHYALEGIIVTQF 745
                 99******************.99*****************7544322223344466***************************************************************************87765999****************************************************6699****************99987 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.6   6.3e+03      65      65 ..     181     181 ..     144     230 .. 0.53
   2 !   28.5   0.0   1.2e-09   1.4e-06       1     118 []     257     386 ..     257     386 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5.6
                 - CS
                 x RF
  PF00005.22  65 t 65 
                 +
  MMETSP0890-20130614|6934_1 181 Q 181
                 1 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 1.2e-09
                 HHHHHHHTTSS------EEE-..--BGGGB-HHHHH.EEEE-------.--BHHHHHH----S--..........-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr.igyipqdpllfpeltvrenldmakeekk..........tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +TLl +++g  +  +g+i+ +   ++ +sd ++  r  +y++q    +p  tv+e + ++ +  +          ++  ++ +l+ + l+  +++     ++++L   q++r+  A +l+ +p +l LDEPt+
  MMETSP0890-20130614|6934_1 257 TTLLDVIAGRKT--SGKITGEIMLNGYPSDFRTFSRiSAYCEQLDVHNPGPTVKEAVHFSASL-RlppayntpkiRQVFVKLILDLLELSPIANDqtgtIETGGLTFEQRKRLTMAVELAANPSILFLDEPTS 386
                 8*******9987..8888888434455555444444678888888888*********877766.35****88888777777778888887755555777888999999***********************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.1e-05     0.047       1      23 [.     245     267 ..     245     303 .. 0.70
   2 !    7.6   0.0    0.0026         3     245     280 ..     366     398 ..     362     418 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.1e-05
   PF13304.1   1 lnviiGpNgsGKSnlLkaldflf 23 
                 ++++ G  g+GK++lL+++++ +
  MMETSP0890-20130614|6934_1 245 MTALMGSSGAGKTTLLDVIAGRK 267
                 69*****************7633 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0026
   PF13304.1 245 lalltallsalekgsvlliDEpEngLHPkllrrlie 280
                 l+++  l+ ++   s+l++DEp +gL+ ++   +i+
  MMETSP0890-20130614|6934_1 366 LTMAVELAANP---SILFLDEPTSGLDSRAALIVIR 398
                 46666666666...************9876555544 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   5.2   9.8e-07    0.0011     242     340 ..       2     143 ..       1     147 [. 0.77
   2 ?    4.0  14.0     0.017        19     162     314 ..     590     741 ..     464     755 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.8e-07
   PF12698.2 242 lllfllfglayialgyllsslfksestaqlvisililllsgfflglfpleslpsflkwifsiiPffslgdgllrii....tgd.lse.........................................illsliiLllfavvyll 340
                 +l+++l ++a++ ++++ls+l  ++ +aq +  +  ll+++f+++++  +s+p  +kw  ++ P++       ++i    +gd + +                                         il+++ +L++ +++ l 
  MMETSP0890-20130614|6934_1   2 ILILILISFAMSQWFAALSALAPDAQSAQPLSGMSVLLFVLFSGFVIQRTSIPPGWKWMYWLSPISL--AWRANVInefrNGDrY-NkctyqidvflcpqnidngccvetndglvflkiyavqtetfyILIAIVVLIAYSILSLF 143
                 799****************************999999888888888999999999999777777766..3333344343344422.13555688888888888888888888888888888888887777777777777777765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.017
   PF12698.2 162 laglllfilifigaliialsiveEkesrike...lqlvsgvspfaywlskilgdllvgliqlllilllafglegipfg.nlllllllfllfglayialgyllsslfksestaqlvisililllsgfflglfpleslpsflkwifsiiPffslgdgll 314
                 ++  +++ +i+++a+     + +E+es  +e   ++  s+++ +  +    + +ll ++++ + il+ +++   +p    ++++  +f l+  ++++l+ +l  ++ ++++aq++ + ++ ++s++++++++  +++s++ ++ ++ P+++  +g++
  MMETSP0890-20130614|6934_1 590 FLDTFFLGIIYFSAA--LGQMSKERESFYREsaaRM-YSPLPYSISFGLSETPYLLSFSFIHTGILFAIVD--LYPGAeRYFFYYAYFALYVSFTTFLAQALVVIMPDQGSAQTLGTSFLQVTSIVSGFSITPGNISSAWIFLYWLSPIHYALEGII 741
                 333444444444444..5567899999665533244.4457777777777788888877777777777788..466668888888******************************8888888****************************9999886 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.1   5.2e-06    0.0059      24      43 ..     244     263 ..     234     271 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.2e-06
   PF13555.1  24 kntlltGasGsGKSTllDAi 43 
                 ++t+l+G sG+GK+TllD i
  MMETSP0890-20130614|6934_1 244 TMTALMGSSGAGKTTLLDVI 263
                 48****************66 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05     0.012      36      59 ..     244     267 ..     225     297 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.1e-05
                 SBEEEE-------HHHHHHH---- CS
  PF03193.11  36 ktsvlvGqSGvGKSsLinallpel 59 
                  +++l+G+SG+GK++L++++++++
  MMETSP0890-20130614|6934_1 244 TMTALMGSSGAGKTTLLDVIAGRK 267
                 6899***************99875 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.13      27      61 ..     237     271 ..     220     286 .. 0.84
   2 ?   -0.8   0.0      0.65   7.4e+02     163     189 ..     391     416 ..     380     418 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
   PF13481.1  27 kgllprgsltllaGapgtGKStlalqlaaavatGe 61 
                  g+  + ++t+l+G++g+GK+tl+  +a++ ++G+
  MMETSP0890-20130614|6934_1 237 TGFSKPATMTALMGSSGAGKTTLLDVIAGRKTSGK 271
                 47788999****************99999888765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.65
   PF13481.1 163 sdvgaviaalerlakrtgaavllvhHt 189
                 +++  vi+a +++a +tg av++++H 
  MMETSP0890-20130614|6934_1 391 RAALIVIRATKNIA-STGRAVVCTIHQ 416
                 45567899999997.788888888885 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5     9e-05       0.1       2      24 ..     245     267 ..     244     279 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9e-05
                 EEEEE-------HHHHHHHHCHS CS
  PF02492.14   2 vtvltGflGsGKTtLlekllekn 24 
                 +t l+G+ G+GKTtLl  +  ++
  MMETSP0890-20130614|6934_1 245 MTALMGSSGAGKTTLLDVIAGRK 267
                 689*************9988544 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00013      0.15       5      34 ..     247     276 ..     244     282 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   PF10662.4   5 lliGkvgaGKTtLtqalkgeelkykkTQai 34 
                  l+G++gaGKTtL   + g++ + k T  i
  MMETSP0890-20130614|6934_1 247 ALMGSSGAGKTTLLDVIAGRKTSGKITGEI 276
                 59*****************99888777665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.19       4      37 ..     243     284 ..     240     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00017
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae........k 37 
                 a+++++ G sG+GKTtll  +a ++   +++ e        +
  MMETSP0890-20130614|6934_1 243 ATMTALMGSSGAGKTTLLDVIAGRKTSGKITGEimlngypsD 284
                 6899**************998887766655555555555541 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.15   1.7e+02     190     231 ..     164     205 ..      86     217 .. 0.77
   2 ?    7.1   0.0    0.0019       2.2      23      50 ..     244     271 ..     224     294 .. 0.80
   3 ?   -1.6   0.0      0.83   9.4e+02     371     412 ..     375     417 ..     365     418 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.15
   PF13175.1 190 hfeniknkvgelsiieykildaykekkerkiikenllknlnf 231
                   +  + +v+e+++++++++d + + ++ +i +++  ++  +
  MMETSP0890-20130614|6934_1 164 IDQVAEQDVYERHTEQMQKKDIQADLHSTNIADDDIPYQKTT 205
                 2333456888*********************99999887655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0019
   PF13175.1  23 slnviiGeNgsGKttILealeklknrkn 50 
                  ++ + G +g+GKtt+L+ +   k++++
  MMETSP0890-20130614|6934_1 244 TMTALMGSSGAGKTTLLDVIAGRKTSGK 271
                 5889****************55554443 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.83
   PF13175.1 371 n..IlliDEPeahlhptlqkellefLkelakknniqiiitTHsp 412
                 n  Il +DEP   l++ +   +++  k++a+  +  ++ t H p
  MMETSP0890-20130614|6934_1 375 NpsILFLDEPTSGLDSRAALIVIRATKNIAS-TGRAVVCTIHQP 417
                 333********************99999999.777777777776 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00028      0.32      19      39 ..     241     263 ..     229     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00028
   PF13476.1  19 kg..ltlItGpNGsGKTTildAi 39 
                 k+  +t++ G  G+GKTT+ld i
  MMETSP0890-20130614|6934_1 241 KPatMTALMGSSGAGKTTLLDVI 263
                 5444899**************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       643  (0.0470304); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.28u 0.37s 00:00:01.65 Elapsed: 00:00:01.15
# Mc/sec: 1611.34
//
Query:       MMETSP0890-20130614|6935_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 321.62
//
Query:       MMETSP0890-20130614|6937_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-14   52.0   0.2      6e-14   51.8   0.1    1.1  1  PF00125.19 Core histone H2A/H2B/H3/H4
    0.00036   20.3   0.1    0.00048   19.8   0.1    1.4  1  PF02969.12 TATA box binding protein associated factor (TAF)
     0.0026   17.6   0.1     0.0042   17.0   0.0    1.5  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
  ------ inclusion threshold ------
       0.03   13.9   0.0      0.043   13.4   0.0    1.3  1  PF07524.8  Bromodomain associated
      0.035   13.7   0.0      0.044   13.4   0.0    1.1  1  PF02291.10 Transcription initiation factor IID, 31kD subunit


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   2.2e-17     6e-14       4      75 .]      28      94 ..      25      94 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 2.2e-17
  PF00125.19  4 llilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75
                + i+k  ++R++r+ ++     +ris+  ++  + +l+ +le++++d++ ++eha+rkt+t+ d+ +A++++
  MMETSP0890-20130614|6937_1 28 QGITKPAIRRLARRGGV-----KRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQ 94
                689**************.....7**********************************************975 PP

>> PF02969.12  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.8e-07   0.00048      37      66 .]      63      92 ..      27      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.8e-07
                HHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
  PF02969.12 37 lkeivqealkfmrhskRqkLtvaDvdsALr 66
                l +++++++ +++h++R++ t+ Dv +AL+
  MMETSP0890-20130614|6937_1 63 LENVIRDSVTYTEHARRKTVTAMDVVYALK 92
                789*************************97 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.5e-06    0.0042      31      65 .]      57      91 ..      28      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18 31 ecveefieelaseAaeickkekrKTikaediklav 65
                 +++ f+e + + ++ ++++++rKT++a d+  a+
  MMETSP0890-20130614|6937_1 57 GVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYAL 91
                56789*************************98775 PP

>> PF07524.8  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.043      34      70 ..      57      93 ..      45      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   PF07524.8 34 diaqsYiqelgrqakrfaehagRseptlkDvvltLke 70
                ++++ +++++ r+   + eha+R ++t  Dvv +Lk+
  MMETSP0890-20130614|6937_1 57 GVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKR 93
                567778888889989999*****************98 PP

>> PF02291.10  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.044      46      75 ..      63      92 ..      49     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS
  PF02291.10 46 tqkilddakvysehakkanieveDvrlAia 75
                 ++++ d+  y+eha+++++ + Dv  A +
  MMETSP0890-20130614|6937_1 63 LENVIRDSVTYTEHARRKTVTAMDVVYALK 92
                5789*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 373.98
//
Query:       MMETSP0890-20130614|6938_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.039   13.7   0.0    1.3  1  PF03800.9 Nuf2 family


Domain annotation for each model (and alignments):
>> PF03800.9  Nuf2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.9e-06     0.039      78     115 ..      68     105 ..      50     111 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.9e-06
   PF03800.9  78 eealqllallkalkklleacgvnDFtlsDllkPeakRl 115
                  +a++l+++ + ++ l++ cg++D ++ D   P a R 
  MMETSP0890-20130614|6938_1  68 ADAFPLMRVSILMRGLMNRCGLHDVSMIDAWEPYALRY 105
                 6899**************************99998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 722.77
//
Query:       MMETSP0890-20130614|6940_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-27   93.6   0.0    1.4e-26   92.9   0.0    1.3  1  PF00588.14 SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> PF00588.14  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0     1e-30   1.4e-26       2     141 ..      27     174 ..      26     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 1e-30
                 ---EEES-S-------HHHHHHH------EEE-.--S.-TTSHHHHHHC---TTTS--EE-S----HHHHHHHH----E-------EGG.......GS-TTS-EEEEE--------HHHHHH-S--EE-----------HHHHHHHHH CS
  PF00588.14   2 livvldeiedpgNlGaiaRtaaafgaselilvkprsv.dllnkkakrasagalellelkvvksleealkdlkeeglkviatslkgkslr.......eielkekvalvfGnEdkGlsnellekadelvkIpmsgeveSLNvavAvaill 141
                 +ivvld++ dp+N+ a++Rt++a+g++ ++++++     + ++ ++ ++ ga+ +l ++++++ ee++++l+  g++v+    ++++l+       +++ +e++alv+G+E++G+s  l + a+++v Ip sg   SLN++vA+a++l
  MMETSP0890-20130614|6940_1  27 IIVVLDQVADPHNIAACLRTVEALGLQYVWIIRSIIEkRPTKRSIACIAKGAECWLTIRRFDTAEECVAQLESDGYSVWICADGENALTlttptppSLAENEQIALVVGRETDGVSLPLQKIAQKRVFIPLSGFSASLNLSVATALVL 174
                 89*****************************98765514555557888******************************77777555444334433233555********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.50s 00:00:01.04 Elapsed: 00:00:00.77
# Mc/sec: 933.65
//
Query:       MMETSP0890-20130614|6951_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   10.9   0.0        0.2   10.3   0.0    1.2  1  PF03215.10 Rad17 cell cycle checkpoint protein
       0.17   11.4   0.9       0.43   10.1   0.0    2.3  3  PF00535.21 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.9e-05       0.2     373     475 ..     171     275 ..     163     283 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.9e-05
  PF03215.10 373 lsgdfetreyllrevsttfatrsvlgsnkk.evyaprewkvrklrnsfkvqafavnkplrekcesakakyilfyLpslslesqrlp..tldklsd.imkveaqidvi 475
                 l + f+ r  ++  + +t ++ +  + n +  +y++ e k++ l  + k ++f+++  +   c  ak +yilf  + ++ ++  ++  +ld ls+ i+  + +i+++
  MMETSP0890-20130614|6951_1 171 LRHGFDIR--TPSSFLETNSNGGIYQLNASlYPYTNIEQKGNILLRTIKRNVFTIGSAFAAACLIAKSRYILFLEKDFATDAAVKQnhILDELSTsILALKRGISIV 275
                 55555555..555566666666665555432689999***************************************9966665554227887765145567788887 PP

>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.79   5.4e+03      62      80 ..      61      80 ..      49      86 .. 0.70
   2 ?   -2.4   0.0      0.43   2.9e+03       3      26 ..     126     152 ..     124     169 .. 0.68
   3 ?   10.1   0.0   6.4e-05      0.43      50      89 ..     204     246 ..     194     338 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.79
                HS-.HHHHHHHHHHHH---- CS
  PF00535.21 62 knv.Gkagarnaglkkatgd 80
                 n+     ar +g+++a g+
  MMETSP0890-20130614|6951_1 61 GNKwRAKYARLNGFARALGN 80
                44446677888888888775 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.43
                 EEEESS-TTTHHHHHHHHHT-...S-- CS
  PF00535.21   3 iiptyNeekylletlesllnq...typ 26 
                 +  +y  +++l+++++s l+       
  MMETSP0890-20130614|6951_1 126 VALSYRSPATLRRSVRSWLESgllHAV 152
                 556799999999999998887555444 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 6.4e-05
                 G..E------HHHHHS-.HHHHHHHHHHHH----EEEEEETTE CS
  PF00535.21  50 k..sdprvrvirleknv.GkagarnaglkkatgdyilflDaDd 89 
                 +  +++++ + + ++nv  +++a+ a++  a+++yilfl  D 
  MMETSP0890-20130614|6951_1 204 NieQKGNILLRTIKRNVfTIGSAFAAACLIAKSRYILFLEKDF 246
                 4457899999*****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.61s 00:00:01.20 Elapsed: 00:00:00.92
# Mc/sec: 1138.27
//
Query:       MMETSP0890-20130614|6949_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-24   83.8   7.8     0.0018   18.0   0.0    9.6 10  PF00400.27 WD domain, G-beta repeat
     0.0048   16.2   0.2       0.13   11.5   0.0    2.6  2  PF13360.1  PQQ-like domain
  ------ inclusion threshold ------
      0.023   14.8   0.2        6.1    7.1   0.0    4.4  4  PF13570.1  YWTD domain
       0.03   13.8   0.3        2.6    7.7   0.0    2.9  3  PF07676.7  WD40-like Beta Propeller Repeat
      0.037   13.6   0.0        1.8    8.1   0.0    3.2  3  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0013       3.4      12      33 ..       2      23 ..       1      28 [. 0.89
   2 !    8.1   0.0   0.00086       2.3      25      39 .]     113     127 ..      97     127 .. 0.91
   3 !   15.7   0.0   3.2e-06    0.0088      13      39 .]     144     168 ..     141     168 .. 0.91
   4 ?   -0.1   0.0      0.32   8.7e+02      16      29 ..     191     204 ..     190     209 .. 0.81
   5 !    8.9   0.0   0.00047       1.3      23      39 .]     247     263 ..     235     263 .. 0.83
   6 !    5.8   0.0    0.0044        12      12      29 ..     281     299 ..     277     314 .. 0.87
   7 !   18.0   0.0   6.5e-07    0.0018      12      37 ..     335     360 ..     325     362 .. 0.90
   8 ?   -2.8   0.0       2.2   6.1e+03      12      23 ..     378     389 ..     375     403 .. 0.82
   9 !    7.3   0.0    0.0015       4.1      14      39 .]     482     507 ..     480     507 .. 0.93
  10 !    5.5   0.0    0.0054        15       8      38 ..     521     552 ..     519     553 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
                SSEEEEEEESSSTEEEEEETTS CS
  PF00400.27 12 spVtcvafspdgpllasgSrDg 33
                +++  + fs+d  +las S D 
  MMETSP0890-20130614|6949_1  2 NGIMHLTFSQDNLHLASVSGDQ 23
                57999***************96 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00086
                 EEEEEETTSEEEEEE CS
  PF00400.27  25 llasgSrDgtirlWd 39 
                 +++sgS+ gt+++W+
  MMETSP0890-20130614|6949_1 113 HILSGSAEGTLCVWS 127
                 89************7 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 3.2e-06
                 SEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  13 pVtcvafspdgpllasgSrDgtirlWd 39 
                 pV++va+  +  + asg++Dg i+lWd
  MMETSP0890-20130614|6949_1 144 PVYAVAVTKN--VYASGGADGMIKLWD 168
                 7888888899..99************9 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.32
                 EEEEESSSTEEEEE CS
  PF00400.27  16 cvafspdgpllasg 29 
                 ++++s +g+ l+  
  MMETSP0890-20130614|6949_1 191 SLCWSSNGKKLLIV 204
                 79*****9998765 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.00047
                 STEEEEEETTSEEEEEE CS
  PF00400.27  23 gpllasgSrDgtirlWd 39 
                 + + a+ ++D t+r+W+
  MMETSP0890-20130614|6949_1 247 PDIYATTGDDATVRVWS 263
                 5588************7 PP

  == domain 6    score: 5.8 bits;  conditional E-value: 0.0044
                 SSEEEEEEESS.STEEEEE CS
  PF00400.27  12 spVtcvafspd.gpllasg 29 
                 ++++c+af+p+ g +la g
  MMETSP0890-20130614|6949_1 281 AACRCCAFAPTyGDRLAVG 299
                 579********98888877 PP

  == domain 7    score: 18.0 bits;  conditional E-value: 6.5e-07
                 SSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27  12 spVtcvafspdgpllasgSrDgtirl 37 
                 ++++++++spdg+ l+ +S+Dg i++
  MMETSP0890-20130614|6949_1 335 KAICDLKWSPDGKSLFVASEDGRIYI 360
                 789*********************98 PP

  == domain 8    score: -2.8 bits;  conditional E-value: 2.2
                 SSEEEEEEESSS CS
  PF00400.27  12 spVtcvafspdg 23 
                 sp+t+++ s d 
  MMETSP0890-20130614|6949_1 378 SPITAIDLSTDA 389
                 899*99999874 PP

  == domain 9    score: 7.3 bits;  conditional E-value: 0.0015
                 EEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  14 VtcvafspdgpllasgSrDgtirlWd 39 
                 Vt+v  s+d+++l+ g++Dgt+ +++
  MMETSP0890-20130614|6949_1 482 VTSVHRSHDSKYLVKGCADGTVAIYN 507
                 999*******************9985 PP

  == domain 10    score: 5.5 bits;  conditional E-value: 0.0054
                 ESSSSSEEEEEEESSSTEEEEEE.TTSEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgS.rDgtirlW 38 
                  gH s +  v+fs d+++l+  + +++ti ++
  MMETSP0890-20130614|6949_1 521 PGHGSRIAKVRFSCDSHYLLVLGqYNRTISVY 552
                 69****************99877777777766 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.038     1e+02      86     146 ..     152     222 ..      37     272 .. 0.63
   2 !   11.5   0.0   4.7e-05      0.13      34     138 ..     344     507 ..     338     512 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.038
   PF13360.1  86 nslvaldaetGkl.lWssqlrs....epiarlrssaspaia......gdrvivgfssgklvaldlktGkvlW 146
                 ++++a   ++G   lW s+l+     e  ++ r+   +a++      g+++++   sg+   l +++G+ + 
  MMETSP0890-20130614|6949_1 152 KNVYASGGADGMIkLWDSKLSLlqafE-MQKFRVLIPSAASlcwssnGKKLLIVARSGEMLELAIESGSSVL 222
                 444444444443334443333222211.11222222222222244554444444445555555555555544 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4.7e-05
   PF13360.1  34 ldggtlfvasakgrlvaldaatGkvlWsksl..egeiegap.lvaggrvvvvtadnslvaldaetGkl......................................................lWssqlrse.piar.lrssaspaia....gdrvivgfssgklvald 138
                 +dg+ lfvas++gr++  + ++G  l s     +++i +     + + + ++ta+++l+ ++ ++Gk+                                                      +W+  ++ e + ++ + +s     +     ++++ g+++g++++++
  MMETSP0890-20130614|6949_1 344 PDGKSLFVASEDGRIYIHEGQDGYNLRSMCSnaNSPITAIDlSTDANTIQAATANDELYFYSVQDGKRitipaktrdtewasvtvpfgwrvqgcwrnskiatqplqdakkaselaprflrnkRWRLSDDEEaQKTPpIVTSV----HrshdSKYLVKGCADGTVAIYN 507
                 59999***********9999999887664335599999998566666666777888************99999999999999999999999998888888888888888888888888888888843333322222333333....2444588888888888888877 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.5     4e+03      21      37 ..      37      56 ..      29      58 .. 0.72
   2 ?    0.9   0.0      0.19   5.2e+02      17      31 ..     144     162 ..     125     168 .. 0.72
   3 ?   -0.8   0.0      0.68   1.9e+03      17      34 ..     290     314 ..     270     319 .. 0.73
   4 ?    7.1   0.0    0.0022       6.1      20      34 ..     345     359 ..     329     360 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.5
   PF13570.1 21 gglvyvgtg...dGrlyAlD 37
                +g++ + +     Gr++++D
  MMETSP0890-20130614|6949_1 37 DGTLLAHGPgpaVGRIFCID 56
                55555555566678888888 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.19
   PF13570.1  17 p...avdgglvyvgtg.dG 31 
                 p   +++ ++vy+++g dG
  MMETSP0890-20130614|6949_1 144 PvyaVAVTKNVYASGGaDG 162
                 3343778999**9999666 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.68
   PF13570.1  17 pavdgglvyvgtg.......dGrly 34 
                 p+++++l++  +g       dG++ 
  MMETSP0890-20130614|6949_1 290 PTYGDRLAVGLGGdtgdrarDGTVA 314
                 5788888887777777777777765 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0022
   PF13570.1  20 dgglvyvgtgdGrly 34 
                 dg+ ++v+++dGr+y
  MMETSP0890-20130614|6949_1 345 DGKSLFVASEDGRIY 359
                 8999**********9 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.03        81      16      28 ..     194     206 ..     194     209 .. 0.85
   2 ?    7.7   0.0   0.00094       2.6      16      28 ..     342     354 ..     341     361 .. 0.85
   3 ?   -3.9   0.0         4   1.1e+04      19      23 ..     408     412 ..     407     413 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.03
                 E-----EEEEEE- CS
   PF07676.7  16 wSPDGkkivFtSn 28 
                 wS +Gkk+  + +
  MMETSP0890-20130614|6949_1 194 WSSNGKKLLIVAR 206
                 9*******98765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00094
                 E-----EEEEEE- CS
   PF07676.7  16 wSPDGkkivFtSn 28 
                 wSPDGk++  +S+
  MMETSP0890-20130614|6949_1 342 WSPDGKSLFVASE 354
                 ********98887 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 4
                 ---EE CS
   PF07676.7  19 DGkki 23 
                 DGk+i
  MMETSP0890-20130614|6949_1 408 DGKRI 412
                 9**99 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.14   3.7e+02       9      25 ..     190     206 ..     157     222 .. 0.77
   2 ?    8.1   0.0   0.00064       1.8      32      78 ..     306     353 ..     292     422 .. 0.77
   3 ?   -2.5   0.0       1.2   3.2e+03      62      90 ..     527     554 ..     500     555 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.14
   PF08662.6   9 vklkWnkkGtyllvlvs 25 
                 ++l W+++G+ ll+ + 
  MMETSP0890-20130614|6949_1 190 ASLCWSSNGKKLLIVAR 206
                 45566666666666554 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00064
   PF08662.6  32 kksyygetelylikekkkeievvelkkegp.ihdvaWspkskefaviy 78 
                  +   g  ++ +i+++k ++   e++k  + i d++Wsp++k + v  
  MMETSP0890-20130614|6949_1 306 DRARDGTVAILRIDMNKLPEVLCEVRKSKKaICDLKWSPDGKSLFVAS 353
                 5556677788899999999999999988777***********999864 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.2
   PF08662.6  62 ihdvaWspkskefaviyGkmpakislfdl 90 
                 i  v  s +s+ + ++ G+ +++is++++
  MMETSP0890-20130614|6949_1 527 IAKVRFSCDSHYL-LVLGQYNRTISVYEV 554
                 6666777666554.456888899998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.51s 00:00:01.23 Elapsed: 00:00:00.93
# Mc/sec: 1435.24
//
Query:       MMETSP0890-20130614|6957_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 135.45
//
Query:       MMETSP0890-20130614|6956_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-40  139.2   0.0    1.7e-40  138.6   0.0    1.2  1  PF00069.20 Protein kinase domain
      8e-39  133.1   0.0    1.1e-38  132.7   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
     0.0018   17.9   3.8      0.041   13.5   0.3    2.5  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.17   10.5   0.0       0.29    9.8   0.0    1.3  1  PF07387.6  Seadornavirus VP7


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   5.1e-44   1.7e-40       3     256 ..     157     441 ..     155     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 5.1e-44
                 EEEEEE----EEEEEEEETTCCE....EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEE....STEEEEEEE--SC-.........EHHHHHH...HHCCB-HHHHHHHHHHHHHHHHHHHHT......CEE-S--SGGGEEEETT--EEE------EEE...........CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC.---TTT.STHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
  PF00069.20   3 lleklGsGsfGkVykakkkktgk....kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfee....kdelylvleyvegg.........dlfdllk...kegklseeeikkialqilegleylHsn......giiHrDLKpeNiLldkkgelkiaDFGlakkl...........eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyellt.gklpfs.geseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                 + + + +G+ + V+k+ + ++++     +A+K+lk +  +++ e  a+r E+++l +++H++i++l++v +        l+  + y+ ++         d     +    e+++  ++  +++ q++++l ylHs        +iHrDLKp+N+ +d++g++k+ DFGla ++             +  klt  +g+ +YmA Ev ++++ y+++vDv+s+G+ ++e+l  +  pf   + ee ++++i+ +l++++++ ++      ++l  +ik +++ d++kR+ + ++l+
  MMETSP0890-20130614|6956_1 157 TDRPVAEGAQAYVFKCLRLSESNnktqLFAIKMLKPHCFHEESELDAFRrEVHLLFHFRHEHICQLVAVSTApnglPVALLEWIPYCIQKvlrlqrvgsDHL---SraqVEREFPGRTRLNMMIQLASALVYLHSGsavhncVVIHRDLKPDNFAIDDHGQFKLLDFGLAVCCqvddfpstqagDYETYKLTGETGSIRYMACEVAKREERYGTRVDVYSFGLACWEILAlRGKPFAfLSVEEHSKQVIHGKLRPTIPSAWN------TQLATIIKACWNGDQNKRPDMPQVLE 441
                 678999**********988776666779*******996666555555555********************99755533333333344333454444444222...244479999*********************88899999***************************9999*******999899999*************************************99853455552456788889999999988888887......679*******************9986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.0   3.3e-42   1.1e-38       4     258 ..     158     442 ..     155     443 .. 0.87

  Alignments for each domain:
  == domain 1    score: 132.7 bits;  conditional E-value: 3.3e-42
                 EEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHT...........GTTGSBHHHHHHHHHHHHHHHHHHHHTT......EEEST-SGGGEEEETTTEEEE-----CEES........TTTSCE..EESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkk...........ekekltlkdllkfalqiakGmeyLeskk......lvHrdLaarNvLleeekvvkisDfGLardi........ekddyy..kkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvek 258
                 ++ + eGa + V+++   +e+++k++  a+K+lk    +ee+e ++f +e++++ +++h++i +l++v t  ++  + ++e++++ +++++Lr +            ++++  ++ l++++q+a+++ yL+s +      ++HrdL   N  ++++ + k+ DfGLa           +   +y  +k ++++ ++++ma E+ k+++ + ++ Dv+sfG  +wEi+ l  +p++ ls ee  +++ + + r + p+ ++++l++++k Cw+ ++++Rp++ ++ e 
  MMETSP0890-20130614|6956_1 158 DRPVAEGAQAYVFKCLRLSESNNKTQLFAIKMLKPhcFHEESELDAFRREVHLLFHFRHEHICQLVAVSTaPNGLPVALLEWIPY-CIQKVLRLQrvgsdhlsraqVEREFPGRTRLNMMIQLASALVYLHSGSavhncvVIHRDLKPDNFAIDDHGQFKLLDFGLAVCCqvddfpstQ-AGDYetYKLTGETGSIRYMACEVAKREErYGTRVDVYSFGLACWEILALRGKPFAFLSVEEHSKQViHGKLRPTIPSAWNTQLATIIKACWNGDQNKRPDMPQVLEV 442
                 677899**********99999999999******883345666799*************************655557889999999.689999988899****99999999********************9976444555689***********************9877556777643.33333577788889*********987665****************************998888888688889*****************************999876 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.2    0.0056        19      33      78 ..     200     241 ..     161     289 .. 0.84
   2 !   13.5   0.3   1.2e-05     0.041     167     196 ..     296     324 ..     290     325 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE--- CS
  PF01636.18  33 aaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvp 78 
                     +rrev+ll +++  +i   +++a   +   +gl++alle++p
  MMETSP0890-20130614|6956_1 200 ELDAFRREVHLLFHFRHEHI--CQLVA--VSTAPNGLPVALLEWIP 241
                 678899**********9988..59999..78899999999999998 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.2e-05
                 EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
  PF01636.18 167 vllHgDlhpgNllvdpddgrvgviDfedag 196
                 v++H+Dl+p+N  +d d+g+  ++Df++a 
  MMETSP0890-20130614|6956_1 296 VVIHRDLKPDNFAID-DHGQFKLLDFGLAV 324
                 789************.556656*****985 PP

>> PF07387.6  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   8.4e-05      0.29     145     192 ..     274     325 ..     263     352 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 8.4e-05
   PF07387.6 145 niivaglkdLmdfhsest....nllhGDcnpenlmcDknGylklvDPvsLle 192
                 n+++   ++L  +hs+s      ++h D +p+n   D  G+ kl D +  + 
  MMETSP0890-20130614|6956_1 274 NMMIQLASALVYLHSGSAvhncVVIHRDLKPDNFAIDDHGQFKLLDFGLAVC 325
                 4444445677777776532111689*********************776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.40s 00:00:01.23 Elapsed: 00:00:00.81
# Mc/sec: 1390.48
//
Query:       MMETSP0890-20130614|6963_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 1084.67
//
Query:       MMETSP0890-20130614|6962_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-10   38.7   0.0    7.7e-09   34.9   0.0    2.6  1  PF14397.1 Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   5.6e-13   7.7e-09     117     240 ..      50     200 .]       2     200 .] 0.81

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 5.6e-13
   PF14397.1 117 f.efvvqelikqheelsklnp..ssvnTlRivTlldd...........nkveilsavlRlgesgadvdNlgsGgiligvdedgg.lkkvaafdkqgekf..............eiHpvtgakfkgfeipnwk.evlelvkkaarr.lpkvrliGW 240
                   ++++qe+ ++h+ ++kl p    + T+R++T  +            ++v  ls+v+R g+ ga++d     +il  vd ++g +      ++q  ++               +Hp++++k +g++ip ++ ++l+ +  a+++ lp+v + GW
  MMETSP0890-20130614|6962_1  50 GgDWIIQEVMENHDDVAKLLPndAPLSTFRVMTASNMyrigearktekEDVFPLSCVFRAGRAGASTDHS---SILFDVDLKTGtIGRGT-TNAQWYQIgktlgvpwgppqpiYYHPDSQTKVSGLKIPDFQkRILDVALHAHKVmLPRVPIAGW 200
                 3489***************997788********74311111222234578889*************8875...7**********776543.33333333344588999999999**************988537***********99******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.60
# Mc/sec: 798.79
//
Query:       MMETSP0890-20130614|6967_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.80
# Mc/sec: 92.86
//
Query:       MMETSP0890-20130614|6965_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.73
# Mc/sec: 1201.46
//
Query:       MMETSP0890-20130614|6972_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.053   12.8   0.0    1.5  1  PF07181.6 VirC2 protein


Domain annotation for each model (and alignments):
>> PF07181.6  VirC2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.8e-06     0.053      92     192 ..     365     462 ..     352     473 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.8e-06
                 -TTS-HHHHHHTTTS-HHHHHHHHHHHH---HHHHHH---GGGS--------ST-----EEEEEE--HHHHHHHHHHHS------TTT---HHHHHHHHHH CS
   PF07181.6  92 apevskiydnlilqysaskslqmilrralddfeamladGsfstapksypiskvveksvivqtsrmfpvsllevarnhfdplgletarafGhklataalasf 192
                  p+v ++ ++ + q s+ ++lq+++  a+++ +am+    f++      +++v + +++v++   +p s+ e+ rn +    l t +a+G+++  + + +f
  MMETSP0890-20130614|6972_1 365 LPQVCNLLNQAVGQESQLRTLQIVM-EAVAQGKAMVLRRLFHMQ--RSIVTHVRGAEILVNSRVQLPQSVAEACRNVLGSHLLRTHQAMGFRVPESVMKAF 462
                 59********************876.6999********999864..4457888899****99999**************************9877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.41s 00:00:01.45 Elapsed: 00:00:01.00
# Mc/sec: 1732.57
//
Query:       MMETSP0890-20130614|6970_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   53.1   0.0    5.6e-10   39.1   0.0    2.5  2  PF00307.26 Calponin homology (CH) domain
    3.5e-08   33.0   0.0    6.8e-08   32.1   0.0    1.5  1  PF00168.25 C2 domain
    0.00073   19.0   0.0      0.017   14.6   0.0    2.5  2  PF11971.3  CAMSAP CH domain
  ------ inclusion threshold ------
      0.021   14.4   0.3        1.4    8.5   0.0    2.4  2  PF14180.1  GTP-GDP exchange factor


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.6e-13   5.6e-10      21     108 ..      25     109 ..       3     110 .. 0.88
   2 !   11.5   0.0     6e-05       0.2       3     105 ..     185     282 ..     183     285 .. 0.70

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.6e-13
                 HSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTTS.-HHHHHTST-HHHHHHHHHHHHHHH CS
  PF00307.26  21 venlskdlsDGvaLaallhkycpdlvdlediskclke.svadsleNlqlalefaeeklgvscvl.tledllysgnkknvlaflaeLfrrf 108
                  ++l +dl+DG++L +l++ ++  ++   d+  clk+   ++++ Nl++++++ ++ +gv+ v  ++ d++ +gn k +l++l++ + +f
  MMETSP0890-20130614|6970_1  25 LRDLRSDLRDGIVLFHLVEVLSGFSI-PGDL--CLKPvHKIQAIGNLNMVFDALRN-IGVKIVKvSPFDIY-DGNLKRILGLLWTTILFF 109
                 4599*******************998.8899..999999*************8888.*************9.************987765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 6e-05
                 HHHHHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSS.SGGGSTCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHTST-HHHHHHHHHHHH CS
  PF00307.26   3 allrWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlv.dlediskclkesvadsleNlqlalefaeeklgvscvl..tledllysgnkknvlaflaeLf 105
                  l  W+ k+++     ++   l   l+DG+++a+l+ ++   +  + +di  +  e      +N +  +  a+  lgv+++   t+   l   +++ ++a+l+eL 
  MMETSP0890-20130614|6970_1 185 GLAAWVSKITQVP---LEPDRLAVNLRDGRVFAKLIRRLLKYQNdQGKDI--DDYEYSKTPEQNMERSFAMAQAILGVPVLIslTPGKAL---DEVALVAYLSELQ 282
                 5789999999865...5566889999**********99877443255666..22222235667777777888888999998866666665...7777777777775 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0     2e-11   6.8e-08       2      84 ..     443     523 ..     442     524 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2e-11
                 EEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTE....EEEEEEECHSSSCSEE---E CS
  PF00168.25   2 kvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelae....leleVkdedrfgkddflGea 84 
                  v v++A++L      +t++py+ + +++    + +T   ++t++P+Wn +  f+v+ + +++    +++ ++  +++  d++lG++
  MMETSP0890-20130614|6970_1 443 AVGVHRARGLFG---GRTINPYCIIRYAD---IEIKTPHLESTNEPIWNHTALFNVDLPITTNkhalITVYIFSANKLIADSLLGKV 523
                 589*******99...89************...667********************99998888998888999999998889999998 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.9e-06     0.017       9      83 ..      21      92 ..      14      94 .. 0.88
   2 ?    1.4   0.0     0.066   2.2e+02      16      32 ..     203     219 ..     193     221 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.9e-06
   PF11971.3  9 lsppvenltrdlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefceekLgnkvseleledlly 83
                +   +++l  dl+DG++L  l+  +   ++p  d clk+++ + + + Nl++++++  +++g k+++ +++d+ +
  MMETSP0890-20130614|6970_1 21 KVGLLRDLRSDLRDGIVLFHLVEVLSGFSIPG-DLCLKPVHKI-QAIGNLNMVFDA-LRNIGVKIVKVSPFDIYD 92
                556789*************************9.********95.689********9.5569**********9975 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.066
   PF11971.3  16 ltrdlsDGvaLaalihf 32 
                 l++ l+DG+++a+li +
  MMETSP0890-20130614|6970_1 203 LAVNLRDGRVFAKLIRR 219
                 78899*********976 PP

>> PF14180.1  GTP-GDP exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015        52      21      70 ..     117     171 ..     105     180 .. 0.84
   2 ?    8.5   0.0    0.0004       1.4      59     100 ..     470     511 ..     466     526 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.015
   PF14180.1  21 skaknilvkvelresdgeksk.....ekksiilntssgpslvssafssvlyhnkn 70 
                  ++  + v+ e+r++d+e +k     + k+ +++t +g++ +ss +s+++  n++
  MMETSP0890-20130614|6970_1 117 LHGPKFRVEEEMRNDDTEMQKallitPPKKKMIETTDGSEISSSPKSTASSANSQ 171
                 66777889999***************888888899********999999988875 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0004
   PF14180.1  59 safssvlyhnknpnFndeiKlkLPldltekhhLlFtfyhvsv 100
                 + +++ l  +++p +n++   ++ l++t++ h l+t+y  s+
  MMETSP0890-20130614|6970_1 470 EIKTPHLESTNEPIWNHTALFNVDLPITTNKHALITVYIFSA 511
                 568899999*****************************7775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.05u 0.36s 00:00:01.41 Elapsed: 00:00:00.72
# Mc/sec: 2253.24
//
Query:       MMETSP0890-20130614|6968_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1107  (0.0809684); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.49u 0.32s 00:00:01.81 Elapsed: 00:00:00.77
# Mc/sec: 2975.22
//
Query:       MMETSP0890-20130614|6973_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-26   91.9   0.1    4.1e-26   90.7   0.0    1.6  1  PF04366.7  Family of unknown function (DUF500)
      2e-17   62.7   7.7    3.6e-17   61.9   5.3    1.4  1  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   6.1e-30   4.1e-26       3     124 ..     240     368 ..     238     369 .. 0.92

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 6.1e-30
   PF04366.7   3 glgaGfqiGveitdvVivlntkealeaftk..gklslGadlsvaagpvGrgaeadtdvse.gsa....pvysysksrGlfaGvslegtvlterkdanakfYgrkvtvkdIlkgeveappaakkLlevlk 124
                 g+++G+ +G+e td V  ++ +  l+   +  ++++lG+++s+a+gp+Gr+a+ ++ + + g a      +sys+srG+f Gv++e ++l+ r+d n+kfYg +v++ +Il g v++p+aak+L+++l+
  MMETSP0890-20130614|6973_1 240 GITFGACLGAEVTDSVTGIDRETMLKLANHqvSNVTLGGEASLALGPFGRTAAGEVHLAAtGPAdhveGYMSYSQSRGAFGGVTVEAAYLKVRDDVNEKFYGYAVNALHILDGTVPRPKAAKPLYDALD 368
                 799*****************9999997776689********************999998864335666899*******************************************************996 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   5.3   5.2e-21   3.6e-17       2      64 ..      56     120 ..      55     124 .. 0.93

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 5.2e-21
  PF01363.16   2 kwvpdaeakkCei..CakkF.sltrrrhhCrlCGkvvCskCsskrvekleeeaaeekevrvCkeCl 64 
                  wv+d+++++C+   C ++F  + +rrhhCr CG+++C+kCs  ++  + +e   ++++rvC++C+
  MMETSP0890-20130614|6973_1  56 AWVDDRTTERCMGraCVTTFdAVYERRHHCRFCGNIFCQKCSARNAMLP-PEWTIKEPQRVCDTCF 120
                 7**********9777*****7788**********************888.999************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       808  (0.0590989); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.81
# Mc/sec: 1730.70
//
Query:       MMETSP0890-20130614|6975_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-24   85.7   0.1    3.4e-24   85.2   0.1    1.2  1  PF03371.10 PRP38 family


Domain annotation for each model (and alignments):
>> PF03371.10  PRP38 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.1   2.5e-28   3.4e-24      45     170 ..       3     127 ..       1     130 [. 0.90

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 2.5e-28
  PF03371.10  45 deivelvkhiggtkggnrk.pseflClllKllelrpekeiilellnnedfkYiraLgllYlRltyepaelyklleplleDyrklkvkakdgdklthvDefvddlltkdrvcdisLprlpkraqleed 170
                 +e++e++ h++++ +g ++ ps+++C+l++l+++ + +  +++ll +  + Y+r+L+ lYlR++ +p +l++++e  l++    k     gd+  +v +++++llt++++++++Lpr+p ++++e++
  MMETSP0890-20130614|6975_1   3 NEAKEKISHLEPWAKGIQRmPSTAFCILFRLFQIGLHRGHVETLLAQ-SSAYVRCLAYLYLRYVCHPSDLWNWCEIGLKEDVDDKLILC-GDTASTVANWLQSLLTDQKYYGTILPRIPIKIEREIK 127
                 78999*************99***********************9976.699************************88877666555554.4489*************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.82
# Mc/sec: 1113.43
//
Query:       MMETSP0890-20130614|6977_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       692  (0.0506144); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.86
# Mc/sec: 1164.74
//
Query:       MMETSP0890-20130614|6978_1  [L=932]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-45  152.7   0.1    1.4e-44  152.0   0.1    1.3  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    2.7e-18   66.0   1.1      1e-17   64.2   0.1    2.5  2  PF06337.7  DUSP domain
    1.8e-07   30.7   1.6    2.6e-06   26.9   0.3    2.9  3  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
       0.01   15.8   0.3      0.034   14.1   0.1    2.0  2  PF05641.7  Agenet domain
  ------ inclusion threshold ------
      0.015   14.4   0.3      0.033   13.3   0.2    1.6  1  PF08271.7  TFIIB zinc-binding
      0.069   12.7   2.8       0.22   11.0   0.8    2.4  2  PF11717.3  RNA binding activity-knot of a chromodomain
      0.071   12.2   0.1       0.13   11.3   0.1    1.4  1  PF13248.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.1   7.3e-48   1.4e-44       2     221 ..     457     800 ..     456     803 .. 0.92

  Alignments for each domain:
  == domain 1    score: 152.0 bits;  conditional E-value: 7.3e-48
                 ----------THHHHHHHHHHHTSHHHHHHHHTTHCCH....H-TTHHTTTHHHHHHHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-....................-SCHHHHC-EEEEEEEEETTCEEE.............................................................EEEECCB-..SEEEEEEE-EEEETTTTEEEE-----B--SEEE-GGGBSCHHH................................................--BTTSSCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.............xxxxxxxxxxxxxxxxxxxxxxxxx.............................................................xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................xxxxxxxxxxxxxx RF
  PF00443.24   2 gvtGleNlGntCYmnsvlQcLvsipelrdyllryeervaeineeneleeeaqlaraladlfkklvenssekkavsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqkae...ds.............ndslitdlfkgqlksrlkclecknv.............................................................kvklkrlP..eiLiihlkRfkyseerssnkKlnekvefpleLdlssyvneekk................................................eeseskpkkYeLva 221
                 g +Gl+NlGntC+mns+lQcL+++++lr+y+l+ e+ ++e ne+n+l++ +++ara ad++++ +  s   +++ P+ +kk+++++++qf gy+QqD++Ef+++lLd+lhedlnr++kk++ e+ +++   d+             n+s+i d f+g l+s++ c++c+++                                                              +++++l   +i +  +++  y++++s+++  ++ + + +eL  ++y+ ++++                                                + +++++++Y+L++
  MMETSP0890-20130614|6978_1 457 GAVGLSNLGNTCFMNSMLQCLSHTKQLREYFLNAERVQSELNEDNPLGSGGNIARAYADFISDSW--SGDYAIIVPTILKKAVGQQASQFLGYQQQDSQEFMSYLLDGLHEDLNRVRKKPYIETLESNgrpDQvvaneswdrfqlrNKSIIIDTFYGLLRSHITCPNCGHEsitfdpyntlslplpsakirrititlsradgsrptkylvqlssrdtitqlkqglarisgetDIDINNLDicDIWSHRIQKC-YKNNQSIEHIKSNDILVAFELSTTNYLPHTQNnqddddaitvetnrtksktvdiyfgrptslahngtmaaitarsgassgAMNTKRSHNYQLFG 800
                 679*************************************************************5..8888999************************************************9988886653388999**********************************************************************************************88888886335666677777.999999*999999*************99887788899999999999999999999999999999999999999999988888888888998887 PP

>> PF06337.7  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   5.3e-21     1e-17       3      97 ..       9      91 ..       7      93 .. 0.92
   2 ?   -1.7   0.0       1.8   3.5e+03      16      16 ..     700     700 ..     539     751 .. 0.62

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 5.3e-21
   PF06337.7  3 kwyliskkWleqwkdyvkydekeedsekssaqkpGpIdnssLveteeekakstllengrlkpqlqegkdyelvpeevweaLyewYgggpeiprkv 97
                 + ++s+kW+  w +y   d++e+ ++++ +++pGpI+n++L+++              l+ +++e++dy+++p  vw++++ wYgggp+i+r++
  MMETSP0890-20130614|6978_1  9 IYCIVSTKWWSAWCNYSGFDSNESLIKNE-YVEPGPISNEPLFDERG-----------MLRIDVVENDDYVVIPNGVWKLIQGWYGGGPAIKRRL 91
                5899*****************99988755.9************9886...........78889******************************86 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.8
   PF06337.7  16 k 16 
                 +
  MMETSP0890-20130614|6978_1 700 S 700
                 1 PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.4   4.7e+03     111     162 ..     120     182 ..     102     221 .. 0.56
   2 !   26.9   0.3   1.3e-09   2.6e-06       1     179 [.     459     673 ..     459     753 .. 0.75
   3 ?   -2.7   0.0       1.4   2.8e+03     161     177 ..     889     925 ..     847     929 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.4
   PF13423.1 111 rerdkseaesslselfgtklisqnrciscqaekvkeesllnlelpyppsek...........g 162
                 +  ++s++++++ el  +++i+q+  + ++a+  ke  ++++ + ++p e             
  MMETSP0890-20130614|6978_1 120 SALSSSNHKNTIIELSRLDTIEQGWLSIVKATGMKEIMNTAVRVWVKPAERdhfvpatgglhD 182
                 556777888888888888888887776666666666666666666666333345555555552 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.3e-09
   PF13423.1   1 aGlennlnncYlnaLLqllfftldlfeailkhs...ecskencllceLgflfnmLdss......tkgtpcqasnllr.alstipeaaalgeqqdvqeanrFileqlslelltlkvdifh................ererdkseaesslselfgtklisqnrciscqaekvkeesllnlelpypp...sek.........giklenileeslnseknk 179
                 +Gl n +n+c++n++Lq l  t++l+e  l+ +    + +e++ l   g + + +  +      + +    +   l+ a ++ ++++   +qqd qe+  ++l+ l+ +l+   ++ ++                  +r +  ++s + ++f   l s ++c +c+ e++   +  +l+lp+p+   +           g +  ++l +++++ +++
  MMETSP0890-20130614|6978_1 459 VGLSNLGNTCFMNSMLQCLSHTKQLREYFLNAErvqSELNEDNPLGSGGNIARAYA-DfisdswSGDYAIIVPTILKkAVGQQASQFLGYQQQDSQEFMSYLLDGLHEDLNRVRKKPYIetlesngrpdqvvaneSWDRFQLRNKSIIIDTFYGLLRSHITCPNCGHESITFDPYNTLSLPLPSakiR-RititlsradGSRPTKYLVQLSSRDTIT 673
                 7*******************************965324555555544444444444.2344456555555555555536777767777777********************9988777788999999999999874444444455555556666899999999********99999999999984340.1333444444555555555555555555 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.4
   PF13423.1 161 k....................giklenileeslnsek 177
                 +                    +++++++l++++++e+
  MMETSP0890-20130614|6978_1 889 EaldidasaagsggrdtkkknSLDIADCLRKLFEKEQ 925
                 0333333444444444445559999999999999887 PP

>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.5   6.8e+03      15      36 ..     265     285 ..     262     288 .. 0.77
   2 !   14.1   0.1   1.7e-05     0.034       1      32 [.     319     349 ..     319     361 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.5
   PF05641.7  15 glrgaWfrAkVlkelkeskykv 36 
                 +++g Wf   V+ +++  +  v
  MMETSP0890-20130614|6978_1 265 DSEGRWFDSVVRQVKEV-QIHV 285
                 67899******999988.6555 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.7e-05
   PF05641.7   1 fskGseVEVsseeeglrgaWfrAkVlkelkes 32 
                 f+kG+  E++seee+ r  W+ A Vl++  ++
  MMETSP0890-20130614|6978_1 319 FKKGDACEIRSEEEK-RALWYEARVLEVYPSD 349
                 8**********9976.**********986555 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.7e-05     0.033       2      15 ..     618     631 ..     617     635 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
                 E-SSS--EEHHB-S CS
   PF08271.7   2 kCPnCgstelvfDa 15 
                 +CPnCg+++++fD+
  MMETSP0890-20130614|6978_1 618 TCPNCGHESITFDP 631
                 8************6 PP

>> PF11717.3  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00011      0.22      30      50 ..     269     300 ..     247     302 .. 0.73
   2 ?   -0.4   0.0      0.43   8.5e+02      12      28 ..     333     349 ..     323     358 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
                 -...........EEEEEE-----SS--EEE-T CS
   PF11717.3  30 k...........yeYYVHYeefNkRlDeWVta 50 
                 +           ++  VH++++  R+D WV++
  MMETSP0890-20130614|6978_1 269 RwfdsvvrqvkeVQIHVHFRGWAARWDTWVDR 300
                 4555555555557778**************86 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.43
                 TTTEEEEEEEEEEEE-- CS
   PF11717.3  12 eegelrkAeilsirtkk 28 
                 +   +++A++l++ +++
  MMETSP0890-20130614|6978_1 333 KRALWYEARVLEVYPSD 349
                 3788*******987744 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.8e-05      0.13       3      14 ..     617     629 ..     615     633 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.8e-05
   PF13248.1   3 vtCPnCGa.vlev 14 
                 +tCPnCG+ ++ +
  MMETSP0890-20130614|6978_1 617 ITCPNCGHeSITF 629
                 79*****966665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.36u 0.27s 00:00:01.63 Elapsed: 00:00:01.21
# Mc/sec: 1845.79
//
Query:       MMETSP0890-20130614|6979_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-21   74.8  28.2    5.6e-21   74.8  19.5    2.5  2  PF07767.6 Nop53 (60S ribosomal biogenesis)


Domain annotation for each model (and alignments):
>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   9.5     0.003        41      18     142 ..       3     114 ..       1     118 [. 0.58
   2 !   74.8  19.5   4.1e-25   5.6e-21     169     341 ..     112     271 ..     108     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.003
   PF07767.6  18 eqfLeeqrderikgGvlaekpdeeLFvvDttgdeeikkkkrkklkkpLksdeiLenrskvpalkskkrkkkkkkkkkkskqvskkelerlkklakekkkkkaklekaskk..nyDlWaeeeplkepe 142
                 e++L+++++       +aek++ +LF++D+ ++ ++k   r+   k  k +e      + +a++++  +k+++  k+ ++ v++   +r  +++k+k++  ++  ++ ++    DlW ++e+ ++ +
  MMETSP0890-20130614|6979_1   3 ESALQDKQEADR----YAEKSNSSLFFFDNAATLDAKTLVRRA--KRAKKKE------ARQAPSDEAVSKTET--KLVERAVARVIRKRESQIRKGKNDEIKNE-NEFQDfeATDLWCDDEEDTKST 114
                 566666665554....8************99888333333322..3444444......444555544444444..45555666666666666665554444433.333344579***9999987643 PP

  == domain 2    score: 74.8 bits;  conditional E-value: 4.1e-25
   PF07767.6 169 akkekevpavevpeaGaSYNPsfedhqellqeeyekElkaekkreklerqeekilekvaeeasrlkemeeglaeeeddeeeeesedesekegfdsekelsinkpvknkrKtkaqRnkekrrkelekeakeekelkkkeeqlarlkeikkevaekekeraekkeerk.ekaekkk 341
                 ++++++ p v+v+ +G SYNPsfedhq+ + +++ +E+k ++k++++e+    +++k+++e +++ e++e+++e+e++e ++           d++ke+++ ++v+ +r t++qRnk+krrk +e e    k+l+ + ++l+++k i ++v+++e+  + ++ +r+ +ka++k+
  MMETSP0890-20130614|6979_1 112 KSTKQKKPYVQVAMPGQSYNPSFEDHQAAVLKAVGIEEKLIEKKKSEEDWW--AKRKAEQE-AAILEKKEDISESEESESDN-----------DNQKEEKTRPRVSGERITRTQRNKQKRRKIAEMEVTNAKALRLQRHELNKIKLITRQVEREERLAKARRVARDaAKADAKA 271
                 45566789************************************9999988..55555533.44444444444444333333...........333334568999*************************************************99888877777745555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1523  (0.111396); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.38s 00:00:01.24 Elapsed: 00:00:00.68
# Mc/sec: 1300.38
//
Query:       MMETSP0890-20130614|6981_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-54  182.2  30.2    3.8e-27   94.7   4.8    2.8  3  PF03176.10 MMPL family
    3.8e-05   21.8   0.2    7.5e-05   20.8   0.1    1.4  1  PF02460.13 Patched family


Domain annotation for each model (and alignments):
>> PF03176.10  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   9.6   1.7e-30   1.2e-26     122     304 ..      13     194 ..       3     200 .. 0.93
   2 ?   -2.7   0.0      0.23   1.6e+03      23      63 ..     224     262 ..     210     300 .. 0.56
   3 !   94.7   4.8   5.6e-31   3.8e-27      76     319 ..     431     683 ..     412     694 .. 0.90

  Alignments for each domain:
  == domain 1    score: 93.1 bits;  conditional E-value: 1.7e-30
  PF03176.10 122 glkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaage....dreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGr 304
                 +++v  tG  ++++  +d++++dl  + +++l ++l +++++++S+ + +lp++  ++  ++a+++  + + +   ++  f+++ ++ l++av+ DY l+L sR+ e++++ +    dr   +i  + ++g++++ +G t+++ +l+L+v   p+l+++Gvai++G++ +++  lTl+PAll llG+
  MMETSP0890-20130614|6981_1  13 DIDVGTTGFEVITKSATDGTKKDLESVDTISLPIALGVMALTLGSITILILPIINMLLATILAFAV--VSKIATTYDIVAFAPSVMMSLILAVSFDYSLFLCSRFLEARREFPlpciDR---IIIVLETAGHTILVSGSTLIVCFLSLLVFPSPTLRGLGVAISVGLFSALFFNLTLTPALLHLLGE 194
                 778999************************************************************..667777899*********************************975211155...999************************************************************97 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.23
  PF03176.10  23 eadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkh 63 
                 +++s  +++vv+ e++  + + ++++ +d l d+ ++  ++
  MMETSP0890-20130614|6981_1 224 STTSRGLRLVVD-ENTGDDHD-EEQKSYDLLDDDYSDSVAD 262
                 355566667766.66666666.6666666665555444444 PP

  == domain 3    score: 94.7 bits;  conditional E-value: 5.6e-31
  PF03176.10  76 vaaafvSkDgkaaralvtlegdpgsteadesvaairaaveear.....pleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalll............glelstfvlgllvvlliavGtDYallLvsR.yreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTll.PAllvllGraalakprrkrkkrwW 319
                 ++  f S D ++a a+v +  ++ s+++ + +++ r+++++a+      l++  +++ G+aa l d+  +   +   ++v tl +++v+L  ++rS++ ++  ++   + l  ++g+ vl+ +  +            g ++++ ++ +   + ++ ++DY ++L++R y+ + a   d ++a+  av+ t   +t aG ++ai++ gL ++  pvl++ +  +  +vl d++i++Tl  PAll+l  +            +wW
  MMETSP0890-20130614|6981_1 431 LMVEFSSTDRQSALAQVVTSSSAYSRAGFAWIEDARDVLRHAHinatlDLASDGIYLDGSAAQLYDTIRSLFASFPWVIVSTLSLVFVLLGAAFRSIAVPARSVIALCLTLSFSFGTlVLVYQRRSsrdpeflstrgtGKGIAWLAPLICLSISVGLAVDYDVFLLARvYHYRFALQLDDKNALLAAVGHTSTIITSAGCIMAISFGGLFLSHAPVLNECAWLLCSAVLYDTFIIRTLFmPALLSLSREY-----------AWW 683
                 566799*************************************99877777788***************************************************************999999754222332233333789***************************87888899999999********************************************************99****997666...........333 PP

>> PF02460.13  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.1e-08   7.5e-05     255     469 ..      62     320 ..      51     343 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.1e-08
  PF02460.13 255 ilgvlspllAivsalGllfllGfrfnsil...lvtPFLvLaiGvDdvflmvaawqrttkkes..vkkRisevlseagvaItitslTdvlsFgiGaiTttpeiqlfClytavavlfdfiYqitffaavlaivakaeaegrevllkr......iakeesaqriesessrk...............................sdkskeaeelks....kffleiyapfllnkkvr.vvvlllfvvylaiavyGilnlkegLdpkk 469
                 il ++  llA++ a++++  +   +  +     v+  L+La+  D +  ++ ++ + +++ +    +Ri+ vl+ ag  I+++  T ++ F    + ++p +  + + ++v ++ + ++ +t+  a+l + ++   + +  l          a +++ qr++s++sr                                 d +       s    + +  + ++f+ +     ++v++l +v  a + + +l+l+ + +p+ 
  MMETSP0890-20130614|6981_1  62 ILPIINMLLATILAFAVVSKIATTYDIVAfapSVMMSLILAVSFDYSLFLCSRFLEARREFPlpCIDRIIIVLETAGHTILVSGSTLIVCFLSLLVFPSPTLRGLGVAISVGLFSALFFNLTLTPALLHLLGEPLGALNDALISFifslpsYASSKQRQRTSSTTSRGlrlvvdentgddhdeeqksydlldddysdsvADIGGTLA---SvhwkDNVFTRLTRFMWEDRRLaIFVVILVAVVSAPCSRYCLQLRPNAEPTA 320
                 6677788899999999999999888644322257778********9999999999998888866789******************************************************************99888877776656765433334446666666555889999887777666666666666555433311111111...1222234444555555544333033333333444445555666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.15u 0.39s 00:00:01.54 Elapsed: 00:00:00.95
# Mc/sec: 1866.64
//
Query:       MMETSP0890-20130614|6980_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-19   67.8   0.0    6.4e-10   38.9   0.0    2.4  2  PF01331.14 mRNA capping enzyme, catalytic domain
    5.1e-13   49.1   0.4    2.4e-12   46.9   0.0    2.1  2  PF02940.10 mRNA capping enzyme, beta chain
     0.0002   21.0   7.7    0.00044   19.9   5.4    1.6  1  PF00397.21 WW domain
    0.00053   20.1   0.0     0.0031   17.6   0.0    2.3  2  PF03919.10 mRNA capping enzyme, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01331.14  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.9e-13   6.4e-10       1     111 [.     386     494 ..     386     509 .. 0.85
   2 !   26.5   0.0   1.1e-09   3.8e-06     163     192 .]     597     626 ..     565     626 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.9e-13
                 -EEE--C.CHHCHHHCS-EEEE--B----EEEEE---......EEEEETT--EEE-SS---BSSTT..STSB--SEEEE-EEEEEE-SSSEEEEEEEEEEEEBTTBB-TTS-HHHHH CS
  PF01331.14   1 qpvslsr.enlkllkqkdYyvseKaDGlRvlllitkk.....evylidrdnevylvenlkfplklekekekvhhgtllDGElvidtveeeqklryliyDilaingelvserplskRl 111
                 +pv + r +  +++    Y v eK+DG R  l+i +       ++lidr+ +v+lv   +++++       +  g +lDGE+v++ +e +q++ +li+D+l    + +s + ++ R+
  MMETSP0890-20130614|6980_1 386 MPVGFCRrHIKQTQTVSAYAVAEKSDGERRFLVIFESlsstkMAALIDRSLDVRLVRLTRDAMRT------LPIGVILDGEIVLN-LE-QQVPVFLIFDVLHDGTRELSAESFDIRY 494
                 588888845566777889**********9999998888999899*************88887777......679***********.44.59**********9988999999998775 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 1.1e-09
                 C-TTTB---EEEESSS------ECCEEE-- CS
  PF01331.14 163 klsheiDGLIfqsvdtpYvagrdknllKWK 192
                  ++h +DGLIf++ +t+Y ag d +llKWK
  MMETSP0890-20130614|6980_1 597 ARFHRSDGLIFVPRKTSYQAGSDPKLLKWK 626
                 578**************************9 PP

>> PF02940.10  mRNA capping enzyme, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   6.9e-16   2.4e-12      17     199 ..      67     255 ..      55     268 .. 0.75
   2 ?   -1.0   0.2      0.33   1.1e+03     204     215 .]     298     309 ..     290     309 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 6.9e-16
  PF02940.10  17 dn........iksekesqiEiEaklGlivdks.......tkeRlklpvstea.ivennadsrfqsgvdedqfkelnnflnelsrekenskrekvslkasktvDkfyelkneekskiRvttdseknqsvlkkieKeriadlniylpnskyDvRiSinlElpvsesklasskktpvyeRrKeRlSyihkkiqfDLTkVeks 199
                 ++         ++++++++EiEa++Gl+ +           +R  +p    +  v+ ++   f sgv+e + +e ++ +++l  +++ +       k  ++ ++ + +++ + +++R+   +e  +s+    +K r+   +  lp+ +yD+Ri i+lE +    +++s +k    +R K+R+S   + +++D T V ++
  MMETSP0890-20130614|6980_1  67 EEgkrnvlnvQQNHGQANVEIEARFGLVCSAGnavgqsdAPKRA-VPSKRGCgAVQTQTSDVFVSGVSEVMARETSETVKKLISQSSGN------SKTWRSLESSFSSEDASLRELRMVVSQE-RGSFF--ERKSRLGIYEAALPSASYDLRIGISLEETLTSLPNQSNGKLWHTHRLKQRISTNLNFWRIDQTTVTTN 255
                 4444555555788999***********99887677766444555.55554441555557888*******************98333444......4444444555555667788999999777.66665..89***************************99889******************99999********333 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.33
  PF02940.10 204 kteekyEvEiEi 215
                 +  ++yE+E+E+
  MMETSP0890-20130614|6980_1 298 EALTTYEIEVEL 309
                 55689******6 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   5.4   1.3e-07   0.00044       4      31 .]     767     794 ..     765     794 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.3e-07
                 SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21   4 gWeersddddGrvYYyNheTgetqWekP 31 
                 +W+e+++++++r+Y++N+eTg t+W++P
  MMETSP0890-20130614|6980_1 767 PWREHFSKTNNRIYWWNKETGMTTWDRP 794
                 5*98886558*****************9 PP

>> PF03919.10  mRNA capping enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   4.3e+03      18      82 ..     218     285 ..     204     292 .. 0.50
   2 !   17.6   0.0   9.1e-07    0.0031      40      91 ..     676     727 ..     632     732 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.3
                 TTS.SCCEEEEECSS-----.EEEE....HHHHHHCTTCCSTSSEEEEEEET..TEEEEEEEETT-SS-- CS
  PF03919.10  18 glL.eeekgkldyveggsdefitak....ekeklksdekelkgkIvEcklddkkgrWkflriRkDKsepN 82 
                   L ++++gkl + + + +++i ++    + ++++ +++++ g   E +++ ++       ++  K++pN
  MMETSP0890-20130614|6980_1 218 TSLpNQSNGKLWHTH-RLKQRISTNlnfwRIDQTTVTTNSYLGLTTEQAFELARA-NGTSTEKANKNNPN 285
                 455666777775543.333222222334555566666666666666666654222.23333455555555 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 9.1e-07
                 EEHHHHHHCTTCCSTSSEEEEEEET..TEEEEEEEETT-SS--BHHHHHHHH CS
  PF03919.10  40 akekeklksdekelkgkIvEcklddkkgrWkflriRkDKsepNsistaekvl 91 
                 + + + +++++ + kg +vE  ld ++g W++   R DK  pN+i ++ ++l
  MMETSP0890-20130614|6980_1 676 RADLHFFAKTTTDTKGVVVELGLDSATGFWNYHGPRPDKAIPNHIDVFISTL 727
                 44667788999999********************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       750  (0.0548566); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.23u 0.50s 00:00:01.73 Elapsed: 00:00:01.07
# Mc/sec: 1780.47
//
Query:       MMETSP0890-20130614|6982_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.3   0.0    3.1e-08   33.2   0.0    2.6  2  PF00156.22 Phosphoribosyl transferase domain
    1.7e-06   27.4   0.1    3.2e-06   26.5   0.0    1.4  1  PF01725.11 Ham1 family


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.058     4e+02      73      95 ..     220     242 ..     194     244 .. 0.81
   2 !   33.2   0.0   4.5e-12   3.1e-08      23     125 .]     420     533 ..     396     533 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.058
                 ---EEEEES-GGGGTTSEEEEEE CS
  PF00156.22  73 reaailesrpeedlkgkrvliVD 95 
                 +  + + ++++++l+++++liVD
  MMETSP0890-20130614|6982_1 220 TARYLYNKSKTASLAERTILIVD 242
                 556677889999**********9 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 4.5e-12
                 HHT----EEEEEE------HHHHHHHHHHHHHH-----SS-S..............EE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEEE CS
  PF00156.22  23 eekgkkdvvvGiargGvplatelaraLglpldlvrvrkssap..............assetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavlv 125
                 ++  k   v++  ++G  la  lar L++pl+ +r+  +                  +++ ++ +  ++l+ + +++++ + vliVDD+la+G   +a+++l ++a a++  ++vl+
  MMETSP0890-20130614|6982_1 420 DSVTK---VLTTGTSGQQLALPLARTLNVPLVCARRDNLELStsplgrvayadsleVTYQSKHYGPGQQLFLPRASMTSTDGVLIVDDFLASGSCQEAMFRLCHKAQATPLALCVLI 533
                 32222...9*************************98777666*************999999999999***********************************************996 PP

>> PF01725.11  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.7e-10   3.2e-06      29     143 ..     196     320 ..     183     326 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 4.7e-10
  PF01725.11  29 eeleeakieveEt.getfeenallKakaaakalgkpvlaDDsgLevdaLngaPG.vysarfa..geea......tdeannekllkelkgl..edrkakfvcvialadpdgkvevfeGeveGeiaeep 143
                 +  +ea+++  E+  ++  e al  a+ +++  +++ la+ + L vdaL+g    + s+ ++     a      + +a+ ekll++l+++    rka+f++  a++ ++++  ++e +   e+a e 
  MMETSP0890-20130614|6982_1 196 RTSDEADPDSTEYvPKSSTELALATARYLYNKSKTASLAERTILIVDALSGSSSrPTSSTMLprA--AaayraeRIDAKAEKLLARLAAVspPSRKARFQSGAAIVLANDNGGMIEAIASSEVAAEL 320
                 455677799999999999*********************************77625666665430..2445444666799**********8888******988888877776777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.41s 00:00:01.32 Elapsed: 00:00:00.88
# Mc/sec: 1576.69
//
Query:       MMETSP0890-20130614|6984_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-29  101.4   0.0    2.4e-29  101.1   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   1.7e-33   2.4e-29       3      94 .]      25     118 ..      23     118 .. 0.94

  Alignments for each domain:
  == domain 1    score: 101.1 bits;  conditional E-value: 1.7e-33
                 B---CT-EEEEEEEEEE.-....--EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   3 kkakegdtVtvhyegkled....gtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                 + + +g+tV+v+y+g+l d    + +fdssy+r++p++f  G+g+vi+g++e+++ mkvG++r+++ip++l+Yg++g+ gg ipp+atl fe +l+
  MMETSP0890-20130614|6984_1  25 T-PAPGQTVKVQYTGWLNDfndlDGKFDSSYDRGRPLTFAAGTGRVIPGWDEAVLSMKVGGTRKVIIPSNLGYGKRGA-GGIIPPDATLYFEMTLV 118
                 4.899************655678999****************************************************.99***********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 536.96
//
Query:       MMETSP0890-20130614|6986_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-13   49.1   0.0    7.8e-13   48.3   0.0    1.5  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   5.7e-17   7.8e-13       2      75 ..       4      80 ..       3     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 5.7e-17
  PF00447.12  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs...nfaSFvRQLnmYgFhkvkdeekkskk..k 75
                F +kl ei  ++e+ e++ w+++ +++++ d+++++++++pk F ++    ++SF+RQLn YgFh+v+ e+++++k   
  MMETSP0890-20130614|6986_1  4 FPSKLKEI--SSEYPEVVCWDHSLQALIIRDPHRLQNEIMPKWFNTNgtgVLKSFTRQLNYYGFHRVSYEKDNTMKplV 80
                56667766..67899*****************************987322579****************9998776441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 794.41
//
Query:       MMETSP0890-20130614|6989_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       884  (0.0646577); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.62
# Mc/sec: 587.49
//
Query:       MMETSP0890-20130614|6983_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.1e-157  522.2   0.0   5.8e-157  522.0   0.0    1.0  1  PF00022.14 Actin
  ------ inclusion threshold ------
      0.066   13.4   0.1       0.23   11.7   0.0    1.8  2  PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.0   0.0  8.5e-161  5.8e-157       2     393 .]       5     377 .]       4     377 .] 0.99

  Alignments for each domain:
  == domain 1    score: 522.0 bits;  conditional E-value: 8.5e-161
  PF00022.14   2 devsavVlDnGssttkaGfagedaPkavipsvvgkprgekvea.....klyvgdealekrpelevrnpvedGvvedwdameelwehvlkeelkvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgkatglvvDsGasvtsvvpvleGlvLkkairrldlgGkalteqlkellsskkvevtprylikkkkavetesfktleeeevleeiKesvcevsddpeg.ekaeasseepessYeLPDgseiilgeerfrvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlwvskqeYeEkGssvverkck 393
                 ++v+a+V+DnGs+++kaGfag+daP+av+ps+vg+p++ + ++     ++yvgdea++kr+ l++++p+e+G+v++wd+me++w+h++++el+v+peehp+llte+plnp+anre++t+i+fE+f+vpa+y+  +avls+yasg++tg+v+DsG++v++ vp++eG++L++ai+rldl+G++lt++++++l+++                 ++sf+t++e+e++++iKe++++v+ d+++ +k++a+s+ +e+sYeLPDg++i++g+erfr+pE+lF+ps ig+e +       gi+++++++i++cdvd+rk+L++niv++GGt+++pg+ eR+ ke+++laps++k+k++ap+ erkys+WiGGSiL+sl+tfq++w+sk+eY+E+G+++v+rkc+
  MMETSP0890-20130614|6983_1   5 EDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVgmdqkDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTER-----------------GYSFTTTAEREIVRDIKEKLTYVALDFDQeMKTAAESSALEKSYELPDGNVIVIGNERFRCPEVLFQPSFIGKEAS-------GIHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMYPGIGERMTKEITALAPSTMKIKVVAPP-ERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPAIVHRKCF 377
                 689************************************9999999*9*************************************************************************************************************************************************6.................9***************************989999999************************************988.......*************************************************************.*****************************************7 PP

>> PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.23      36      68 ..      61      93 ..      36      99 .. 0.81
   2 ?   -1.8   0.0      0.53   3.7e+03      40      67 ..     104     129 ..      94     133 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.4e-05
   PF10183.4 36 dppkgllfgkkpispGekrdwegwelafflgft 68
                +++ g l  k+pi +G    w ++e++++ +f+
  MMETSP0890-20130614|6983_1 61 QSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFY 93
                356688999*********************996 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.53
   PF10183.4  40 gllfgkkpispGekrdwegwelafflgf 67 
                 + l+++ p +  +k  +e++ +++f +f
  MMETSP0890-20130614|6983_1 104 PVLLTEAPLN--PKANRERMTQIMFETF 129
                 4566666655..7899999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.47s 00:00:01.22 Elapsed: 00:00:00.89
# Mc/sec: 1015.09
//
Query:       MMETSP0890-20130614|6996_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-46  154.9   5.5    3.5e-07   30.2   0.0    9.0  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    8.6e-25   85.6  41.2    1.2e-05   24.6   0.9    8.3  8  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.2   3.1e-10   2.1e-06       6      50 ..     112     159 ..     109     160 .. 0.90
   2 !   30.2   0.0   5.1e-11   3.5e-07       1      51 []     163     211 ..     163     211 .. 0.95
   3 !   12.7   0.1   1.5e-05       0.1       2      51 .]     215     269 ..     214     269 .. 0.90
   4 !   18.8   0.0   1.8e-07    0.0013       1      50 [.     272     334 ..     272     335 .. 0.96
   5 !   23.8   0.0   4.9e-09   3.4e-05       2      51 .]     339     385 ..     338     385 .. 0.83
   6 !   16.6   0.0     9e-07    0.0062       4      35 ..     391     427 ..     390     440 .. 0.79
   7 !   16.3   0.1   1.1e-06    0.0076       4      50 ..     450     514 ..     449     515 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 3.1e-10
                 EE---------....--------S-EE-GGG------EEE-----EEE CS
  PF00415.13   6 sWGrndyGqLG...kggseenvlvPvkveglsgvrvvqvacGgsHtla 50 
                 s+G +d GqLG   + +    v +P+ +e+l+++ +  vacGg H++a
  MMETSP0890-20130614|6996_1 112 SFGSGDCGQLGhgtQSDKDTVVAIPRAIESLRNKQIAIVACGGLHNVA 159
                 8**********7777777778899999*******************99 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 5.1e-11
                 TTEEEEE---------.--------S-EE-GGG--.----EEE-----EEEE CS
  PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsg.vrvvqvacGgsHtlal 51 
                 dG Vy+WG+nd+  LG      ++  P++v ++s    v++va+G++ +la+
  MMETSP0890-20130614|6996_1 163 DGYVYTWGCNDEASLG---RPGDEARPMRVDMPSEcGFVSHVAAGDTQSLAV 211
                 8***************...999999**********88999*********997 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 1.5e-05
                 TEEEEE---------.........--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   2 GrVysWGrndyGqLG........kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 G+Vy+WG+  +   G         ++ ++++  P ++e l++  +v v cG+ +++al
  MMETSP0890-20130614|6996_1 215 GDVYAWGCYKDKE-GkawfdtndTLPPKRKQESPLLIEALRN--IVRVDCGSAYNAAL 269
                 8999999777666.7788999999999***************..********999987 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 1.8e-07
                 TTEEEEE---------..................--------S-EE-GGG------EEE-----EEE CS
  PF00415.13   1 dGrVysWGrndyGqLG.................kggseenvlvPvkveglsgvrvvqvacGgsHtla 50 
                 dG++ +WG ++ G LG                  +  e++ l+P+kv +l +    + acG++H la
  MMETSP0890-20130614|6996_1 272 DGSLLTWGIGEIGELGrskklrplrnsengkydTDAIERDHLTPRKVLSLCK----AFACGAYHLLA 334
                 8*****************************99999999**************....********988 PP

  == domain 5    score: 23.8 bits;  conditional E-value: 4.9e-09
                 TEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   2 GrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 G +++ G n+yGqLG +g+ +++   +++    +  v q a G +H+l+l
  MMETSP0890-20130614|6996_1 339 GTLFTSGLNNYGQLG-DGTRRDRARLRPILRKAH--VLQLAGGQHHSLCL 385
                 99*************.777776665555666666..************97 PP

  == domain 6    score: 16.6 bits;  conditional E-value: 9e-07
                 EEEE---------......--------S-EE-GGG-- CS
  PF00415.13   4 VysWGrndyGqLG.....kggseenvlvPvkveglsg 35 
                 + ++Gr dyGqLG      +   + v +P++++ l+ 
  MMETSP0890-20130614|6996_1 391 LLAFGRADYGQLGlgkdtGTEPGSFVMIPTPIPHLRF 427
                 789**********999888888888899999988864 PP

  == domain 7    score: 16.3 bits;  conditional E-value: 1.1e-06
                 EEEE---------....--------S-EE-GGG--...............----EEE-----EEE CS
  PF00415.13   4 VysWGrndyGqLG...kggseenvlvPvkveglsg...............vrvvqvacGgsHtla 50 
                 +y+WG +d   LG   +  ++++++ P++v++                   +++  a+Gg+H+++
  MMETSP0890-20130614|6996_1 450 IYAWGYGDMNALGlgsSSSESQDKFEPTLVNLDACalfsqdneddsaekqLNISILAAGGQHSVL 514
                 8************9998899999999999988777777778888888888888888888888876 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0011       7.8      20      30 .]     110     120 ..     103     120 .. 0.84
   2 !   24.6   0.9   1.7e-09   1.2e-05       4      27 ..     150     173 ..     145     175 .. 0.91
   3 !   20.9   0.3   2.6e-08   0.00018       1      25 [.     198     222 ..     198     226 .. 0.95
   4 !   15.6   0.1   1.2e-06    0.0081       1      24 [.     256     279 ..     256     282 .. 0.91
   5 !   18.8   0.7   1.1e-07   0.00078       3      30 .]     324     351 ..     322     351 .. 0.94
   6 !   16.6   0.1   5.8e-07     0.004       1      30 []     372     401 ..     372     401 .. 0.97
   7 !    4.5   0.9    0.0036        24       5      27 ..     431     457 ..     430     460 .. 0.72
   8 !    3.2   0.0     0.009        61       4      16 ..     505     517 ..     502     518 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0011
                 EEEE---TTST CS
   PF13540.1  20 VlcWGsNssGQ 30 
                 V+++Gs+++GQ
  MMETSP0890-20130614|6996_1 110 VVSFGSGDCGQ 120
                 9*********9 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.7e-09
                 EE-----EEEE-.---EEEE---T CS
   PF13540.1   4 vsaGgyHtcaLtsdGaVlcWGsNs 27 
                 v++Gg H +a t+dG V++WG+N+
  MMETSP0890-20130614|6996_1 150 VACGGLHNVACTNDGYVYTWGCND 173
                 89********************96 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 2.6e-08
                 --EEE-----EEEE-.---EEEE-- CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGs 25 
                 V +v+aG+  ++a+ts G+V++WG+
  MMETSP0890-20130614|6996_1 198 VSHVAAGDTQSLAVTSRGDVYAWGC 222
                 679*********************5 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 1.2e-06
                 --EEE-----EEEE-.---EEEE- CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWG 24 
                 +v v +G+ +  aL+sdG++l+WG
  MMETSP0890-20130614|6996_1 256 IVRVDCGSAYNAALKSDGSLLTWG 279
                 67899******************* PP

  == domain 5    score: 18.8 bits;  conditional E-value: 1.1e-07
                 EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 + ++G+yH +a  + G++++ G N++GQ
  MMETSP0890-20130614|6996_1 324 AFACGAYHLLAANNAGTLFTSGLNNYGQ 351
                 569************************9 PP

  == domain 6    score: 16.6 bits;  conditional E-value: 5.8e-07
                 --EEE-----EEEE-.---EEEE---TTST CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                 V +++ G  H++ L+++ ++l++G+ ++GQ
  MMETSP0890-20130614|6996_1 372 VLQLAGGQHHSLCLLTSKQLLAFGRADYGQ 401
                 6799*************************9 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.0036
                 E-----EEEE-.---....EEEE---T CS
   PF13540.1   5 saGgyHtcaLtsdGa....VlcWGsNs 27 
                 ++G++H ++L  + +    +++WG ++
  MMETSP0890-20130614|6996_1 431 CSGSNHCIGLSLSSSsapsIYAWGYGD 457
                 69****66666444445******9865 PP

  == domain 8    score: 3.2 bits;  conditional E-value: 0.009
                 EE-----EEEE-. CS
   PF13540.1   4 vsaGgyHtcaLts 16 
                 ++aGg H++ ++s
  MMETSP0890-20130614|6996_1 505 LAAGGQHSVLVVS 517
                 69*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:01.42
# Mc/sec: 879.23
//
Query:       MMETSP0890-20130614|6997_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-06   26.3   0.0    1.2e-05   24.9   0.0    1.7  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.6e-10   1.2e-05      37      69 ..       6      38 ..       3      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 8.6e-10
                CHHCHHCCTTCHHHHHHHHHHHT-EEEEEEEEE CS
  PF02894.12 37 kkggGvlgdlgiHdiDllqwLfGeppsvvaalg 69
                k+ggG++ d+++Hd+D+ ++L+G++p++  a g
  MMETSP0890-20130614|6997_1  6 KGGGGIFKDMAVHDLDMSRHLMGSEPVEILASG 38
                589************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.99
# Mc/sec: 554.31
//
Query:       MMETSP0890-20130614|7006_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.8   0.0      0.086   13.2   0.0    1.3  1  PF02398.11 Coronavirus protein 7


Domain annotation for each model (and alignments):
>> PF02398.11  Coronavirus protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.3e-06     0.086       4      37 ..       3      36 ..       2      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.3e-06
  PF02398.11  4 llqavfvtvlillligrlqllerlllshllnlkt 37
                ++++v++ +l+lll+  +   e l ls ++nl  
  MMETSP0890-20130614|7006_1  3 MMKTVMIWLLLLLLVATIYECEALYLSSSFNLDR 36
                5789***************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       647  (0.047323); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 529.52
//
Query:       MMETSP0890-20130614|7003_1  [L=998]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-32  109.6   0.0    1.5e-31  108.2   0.0    1.8  1  PF06602.9  Myotubularin-related
    2.3e-24   84.6   0.2    4.4e-24   83.6   0.1    1.5  1  PF13849.1  Myotubularin Y_phosphatase-like
     0.0022   17.4   0.0     0.0044   16.4   0.0    1.5  1  PF00566.13 Rab-GTPase-TBC domain
     0.0037   17.4   0.5      0.013   15.6   0.0    2.0  2  PF13350.1  Tyrosine phosphatase family
     0.0099   15.3   0.0      0.023   14.1   0.0    1.5  1  PF00782.15 Dual specificity phosphatase, catalytic domain
  ------ inclusion threshold ------
      0.026   13.7   0.0      0.054   12.7   0.0    1.4  1  PF00102.22 Protein-tyrosine phosphatase
        5.4    4.4  11.3       0.61    7.5   1.0    2.2  2  PF13779.1  Domain of unknown function (DUF4175)


Domain annotation for each model (and alignments):
>> PF06602.9  Myotubularin-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   7.8e-35   1.5e-31       3     115 ..     554     667 ..     552     669 .. 0.94

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 7.8e-35
                 S-TTS-SSEEEETTS-HHHHHHHCCCB------EEEEE-..TTT--EEEEEE-B---------HHHHHHHHHHHHHSTT-SSEEEEE-SSCHHHHHHHH-------TTTSTTEEE CS
   PF06602.9   3 lcesYPaklvvPksisdkelekvakfrskkRlPvlvyrh..qengavivRcsQPlvgllgkrnaeDEkllksiakanaeskkllivdarsktnavanrakGggleseekysnael 115
                 lc++YP  lvvP++++d el+kva++rs++R+Pv+++    ++nga+i R+sQP+ g+ +kr+ +DE++l+++++ + +s++l+++darsk++ + nr++G g+e +++y+ +++
  MMETSP0890-20130614|7003_1 554 LCDTYPPDLVVPSAVNDLELRKVATYRSRGRIPVVIWTSadPNNGATISRSSQPKPGVQNKRSIDDERYLDELRRLC-NSRRLVVMDARSKVATQGNRVMGMGTELTRYYEGVDI 667
                 8************************************863368********************************88.8*******************************97765 PP

>> PF13849.1  Myotubularin Y_phosphatase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.1   2.3e-27   4.4e-24       2      55 .]     794     847 ..     793     847 .. 0.98

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 2.3e-27
   PF13849.1   2 svlvhcsdGwDrtsqltSLaqlllDpyyrtiegfqvLIekeWlsfGhkfsdRcg 55 
                  vlvhcsdGwDrt+q+t La l+l p++rti+gf ++ ++eW+ fGhkf +Rcg
  MMETSP0890-20130614|7003_1 794 AVLVHCSDGWDRTPQITVLALLMLEPKFRTIDGFLTIFQREWVDFGHKFDERCG 847
                 69***************************************************7 PP

>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.3e-06    0.0044     133     200 ..      11      82 ..       3      96 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.3e-06
  PF00566.13 133 lqrdlqileellkkhdpelykhlekeeldlslfaikWfltlfvrelpletvlrlwD.lflega...kflllr 200
                 +q  l   ++l+ ++dpely +l +++ + +     W+ tl ++e +l+++l +wD ++l g+   + l+  
  MMETSP0890-20130614|7003_1  11 IQDILTSGRNLIGRVDPELYARLATNSGKADKVGRLWLETLWACEPELDDALSVWDeILLGGDkqnSALHAA 82 
                 66666677899**************9999999************************9999665444333444 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2   2.3e+03      53     112 ..     476     537 ..     469     555 .. 0.56
   2 !   15.6   0.0   6.5e-06     0.013     117     151 ..     785     819 ..     768     825 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
   PF13350.1  53 eEvekepdklpegvkyvnlpvlkeeaespeelaerlkeaeeaeeamaelyreileda..kka 112
                 +E+e e +++  +  +   ++ +ee+++++++++ ++ +  a+ ++++ yr+ + ++  +++
  MMETSP0890-20130614|7003_1 476 DEIEDELSQVRTEYITADTKIAEEEMKNNQATSRAASLPIMAKYSLVDEYRKTVLRPyvTNE 537
                 44444444444444444555555555555555555555777888888888888777656444 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6.5e-06
   PF13350.1 117 lealaeeegpvlfHCtaGKDRTGvvaalllsllgv 151
                 +e+   e+++vl+HC+ G DRT  +++l l +l+ 
  MMETSP0890-20130614|7003_1 785 VELAYYERTAVLVHCSDGWDRTPQITVLALLMLEP 819
                 444445668*******************9999875 PP

>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05     0.023      53      98 ..     772     818 ..     759     838 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
                 --CGGGHHHHHHHHHHHCC----EEEE-----HHHHHHHH.HHHHHH CS
  PF00782.15  53 tkiskeleeavefiekaeqkgkkvlVHCqaGisRSatlii.aYlmkt 98 
                 +++ + l +av+ +e a  ++  vlVHC  G  R++ +++ a lm +
  MMETSP0890-20130614|7003_1 772 KQVHSILAAAVRTVELAYYERTAVLVHCSDGWDRTPQITVlALLMLE 818
                 6777889999999***********************99652666655 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.8e-05     0.054     157     195 ..     780     817 ..     760     831 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHSSTTSS-EEEES------HHHHHHHHHHHH CS
  PF00102.22 157 dlirkvrksktaksgpvvVhCsaGvgRtgtfvaldille 195
                   +r v+     +++ v+VhCs+G  Rt  + +l +l+ 
  MMETSP0890-20130614|7003_1 780 AAVRTVELAY-YERTAVLVHCSDGWDRTPQITVLALLML 817
                 3344444444.788**************99999888775 PP

>> PF13779.1  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.8      0.02        39     601     621 ..     234     254 ..     228     277 .. 0.81
   2 ?    7.5   1.0   0.00031      0.61     394     479 ..     416     506 ..     414     511 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.02
   PF13779.1 601 qeLsDetFrelqeqqnaqqge 621
                 q+L De Fr++q+qq++++++
  MMETSP0890-20130614|7003_1 234 QDLADERFRQQQQQQQQHARK 254
                 99*******988888877665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00031
   PF13779.1 394 qRrdLaldaenaprvaqlldal.....slrPeelirdasayLgLrsalrrLeearsdealkevadaLWelAlkiEdGdlsdAerrLrrAqe 479
                 qRr+++ + ++++++++l +a+     s++P+ + r  +a L+L  al+    +r+d++ +e+ d+L ++  +   +d + Ae+++++ q 
  MMETSP0890-20130614|7003_1 416 QRRHFLIADRSSDEALKLYRAVsslafSHAPDAFARAHRAALELGPALEPSAWDRDDDEDDEIEDELSQVRTEYITADTKIAEEEMKNNQA 506
                 9*******999999999999873333369*********************************************9***********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.50u 0.41s 00:00:01.91 Elapsed: 00:00:01.01
# Mc/sec: 2367.89
//
Query:       MMETSP0890-20130614|7005_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.84
# Mc/sec: 1315.14
//
Query:       MMETSP0890-20130614|7007_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-09   36.3   0.2    1.4e-07   31.8   0.0    2.2  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
     0.0047   16.4   0.2       0.01   15.3   0.1    1.5  1  PF13661.1  2OG-Fe(II) oxygenase superfamily
     0.0072   16.3   0.3      0.014   15.3   0.2    1.5  1  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.068   12.4   0.0       0.16   11.2   0.0    1.6  1  PF00036.27 EF hand


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     4e-11   1.4e-07      14      86 ..      39     108 ..      24     122 .. 0.84
   2 ?    2.2   0.1     0.066   2.3e+02       3      21 ..     209     231 ..     207     242 .. 0.69

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4e-11
   PF13640.1  14 pHvDnse.sssrrltlllylndpew.eeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpv 86 
                 +H D+s+    + +t+++y + + w  ++GGe+ +   +  +++++++   +v pkp rl++F+s +++H ++p+
  MMETSP0890-20130614|7007_1  39 AHQDRSHdALAFSVTAIWYPH-ERWsSAWGGETTFLSGS--GDSSADLL-LPVLPKPRRLLMFDS-EIPHMAKPT 108
                 899**9999************.9999**********874..44555554.3455***********.******998 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.066
   PF13640.1   3 lnrygpggflspHvDnse....s 21 
                 +++ ++  ++++H Dn++     
  MMETSP0890-20130614|7007_1 209 IRYEEDSSRHFAHLDNFSitaaL 231
                 56779999********5544440 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1     3e-06      0.01      27      64 ..      40      75 ..      37      80 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3e-06
   PF13661.1 27 HiDadpsqlgkprflsallYLNedwdadfdGgtlffdd 64
                H+D  +  l   ++++a+ Y++e+w   ++G+t+f+  
  MMETSP0890-20130614|7007_1 40 HQDRSHDAL--AFSVTAIWYPHERWSSAWGGETTFLSG 75
                777666666..899******************999865 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   4.2e-06     0.014       8      40 ..     155     187 ..     151     224 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.2e-06
   PF13499.1   8 llDkdgdgyldkeeLlrllkhlgselsdeevre 40 
                 ++D+d++  l++ eL +l++hl  e++++ +++
  MMETSP0890-20130614|7007_1 155 RFDTDHNQLLSRSELIQLFRHLEIERIEGAIQR 187
                 69********************99998665555 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05      0.16       7      29 .]     154     176 ..     151     176 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.6e-05
                 HHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27   7 kefDkDgdGkIsfeEfkealkkl 29 
                 + fD+D++  +s +E+++++++l
  MMETSP0890-20130614|7007_1 154 ERFDTDHNQLLSRSELIQLFRHL 176
                 57*****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 733.88
//
Query:       MMETSP0890-20130614|7008_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-08   32.3   5.7    5.7e-08   31.8   2.1    2.7  2  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
      0.072   13.0   0.1       0.16   11.9   0.1    1.6  1  PF00473.12 Corticotropin-releasing factor family


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.25   1.7e+03       3      11 ..     207     215 ..     206     223 .. 0.50
   2 !   31.8   2.1   8.4e-12   5.7e-08       3      36 .]     263     296 ..     261     296 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.25
                 EE-TTEEE- CS
  PF00132.19   3 vIGenvlIg 11 
                 +IG+ + I 
  MMETSP0890-20130614|7008_1 207 KIGNFSSIA 215
                 444444444 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 8.4e-12
                 EE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEES CS
  PF00132.19   3 vIGenvlIgpnvvigggviIGdnviIgagvvigg 36 
                 +IG++v+I ++++i+gg++I+ +++++ag+v+++
  MMETSP0890-20130614|7008_1 263 TIGSDVWICAYATILGGITIHHGAVVAAGAVVTK 296
                 7*******************************86 PP

>> PF00473.12  Corticotropin-releasing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.4e-05      0.16      11      37 ..      41      69 ..      40      71 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.4e-05
                HHHHHHHH..HHHHHHHHHHHHHHHHHHH CS
  PF00473.12 11 dvLRqrLe..leraerrlrqaenNRnlLn 37
                d+LR rL   +e+a++ l++a++N ++++
  MMETSP0890-20130614|7008_1 41 DILRSRLQsaNELARKTLEAAKSNTIFMT 69
                89*****65599***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 1365.54
//
Query:       MMETSP0890-20130614|7010_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-09   36.9   0.0    5.5e-09   36.3   0.0    1.4  1  PF13385.1  Concanavalin A-like lectin/glucanases superfamily
     0.0091   15.2   0.5      0.012   14.8   0.4    1.1  1  PF07010.7  Endomucin
  ------ inclusion threshold ------
      0.017   13.8   1.0      0.023   13.3   0.7    1.1  1  PF04108.7  Autophagy protein Apg17
       0.14   11.4   0.0       0.35   10.1   0.0    1.7  1  PF00354.12 Pentaxin family


Domain annotation for each model (and alignments):
>> PF13385.1  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.6e-12   5.5e-09       9     156 ..      45     230 ..      37     231 .. 0.56

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.6e-12
                 --..---T.TGGGGTEE.EEEEEEEE-S-----EE.---................------........----EEETTSEEE------......----E-E--.........TT-EEEEEEEEETTE-EEEE--------------------EEE-----...--.......-----EEEEEEEEESS---HHHH CS
   PF13385.1   9 dsyvelpn.ldlpsdaf.TisaWvkpdslargqrl.lig................assgen........gwglgldgggklrftvggggg.kgqtvtsdsavp.........dgkWhhvavtydggtvklYvnGelvgsttasgtgssattgplyiGasg...gg.......drpfnGtidevriynraLsaaei 156
                 +++ve+++ + ++ ++f T++aW  +   ++++ + +                       +           l  d++g+ ++ v++g+  +++++ s+   +         +  W+h +++ ++++ ++++nG+ +g + a        +   +iG+ +   +g       d+ ++G +++vr+++raL+ ++i
  MMETSP0890-20130614|7010_1  45 GAAVEIGDgEGIEIGEFsTLAAWLELPLIQNRGESeITLagcgpdsrmvlgddddL----DaaesrrrlDALLEEDEDGGAMVCVKNGELgARRDHLSGF--RgcgffvddaTPGWYHMVAVAKNNETTFWINGRIIGIAKARAPSR---SRLRRIGGKSpgsNGpatrvvlDESWRGNLADVRLFDRALNNDDI 230
                 55566655455554444366666666655533332122234555555543333321....0223323333333335555555555555432222222222..1112222333679***********************997655533...3344566555554114456777*********************99 PP

>> PF07010.7  Endomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   3.5e-06     0.012      59     145 ..     249     336 ..     229     355 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.5e-06
   PF07010.7  59 tpPkGtiksevsktslvstldslttkkeelktttegvlknessiikvtvanvtlsnavstlsssknktenqssirttei.vttsllqd 145
                  pPk   ++  ++  l+ ++d + + ++ l +tt     n +  i+v +  +++ na ++l  + +kt +q  ++t +  ++++ l++
  MMETSP0890-20130614|7010_1 249 LPPKLHRQNRAARARLLEAIDDVDAAQQILSATTMALHANCALHIDVKLLLSAIQNASTSLADAIDKTRSQFHLHTDNTkTNGDTLNP 336
                 5899999999****************************************************************99887556666655 PP

>> PF04108.7  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.7   6.7e-06     0.023       5      74 ..     258     330 ..     256     343 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.7e-06
   PF04108.7   5 eaAkstLskaqkvcreAneiltsarqeLeesvkssaklkflvkglkeQlklLek...kvrsealiekekgqse 74 
                 +aA+++L +a      A++il++++ +L+   + ++++k l++++++  + L+    k+rs+  + ++++++ 
  MMETSP0890-20130614|7010_1 258 RAARARLLEAIDDVDAAQQILSATTMALHANCALHIDVKLLLSAIQNASTSLADaidKTRSQFHLHTDNTKTN 330
                 5899999998888888*************************************98888888877777777665 PP

>> PF00354.12  Pentaxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001      0.35     141     173 ..     207     239 ..     143     244 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
                 GGG-----B---EEESS---HHHHHHHH----- CS
  PF00354.12 141 ksqslvGeisdlnlWdsvLtpeeiksvykgspl 173
                  + s  G+++d+ l+d +L++++i s+ ++ pl
  MMETSP0890-20130614|7010_1 207 LDESWRGNLADVRLFDRALNNDDITSLFTSGPL 239
                 5789*********************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.75
# Mc/sec: 1137.47
//
Query:       MMETSP0890-20130614|7017_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-17   61.8   0.6    5.5e-15   55.4   0.1    2.4  2  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1     4e-19   5.5e-15       2     186 ..      16     163 ..      15     170 .. 0.84
   2 ?   -2.9   0.0      0.29     4e+03     181     197 ..     184     200 ..     184     201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 4e-19
   PF04755.7   2 klkrkLldaisgterGlsassddraeieelvkklealnptpaplesldlLdGkWrLlYttskellpllarkklpllkvgeiyQtIdvenksvqNsvelsglpllegsvsvaakfevaspkrvelkFeravlklkkllkglltslqdtasniaraissqlpikfrlsgeeakgwLeitYlDedLRI 186
                 ++k+k +++ +gt+ Gl as+++ aei++l   l    p+ +p  s + L+G+W+LlYtt  +        kl    vg++yQ Id ++ +  N+ el +      ++++ a  e++ p + ++ F +  +                         s l  +f+  +  a+g   +tYlD+d RI
  MMETSP0890-20130614|7017_1  16 QIKSKIVKLAQGTQNGLNASPRTSAEINKLCDILKP-SPQRKPALS-SALNGRWELLYTTTTGNSAG----KL-GPLVGKVYQEIDLQSLRYLNILELGP-----IVAKLDATWEILAPDQWKVIFRSLQF-------------------------SILGFSFPEKDLSATGIWRMTYLDDDFRI 163
                 7899***************************99976.566667656.79*************99855....55.3448*******************777.....5799*****************55533.........................22456777778888888888888888888 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.29
   PF04755.7 181 DedLRIsRGdeGslfvl 197
                 D++LR ++ ++ ++++l
  MMETSP0890-20130614|7017_1 184 DKQLRSGKENNDNVYIL 200
                 899********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 663.10
//
Query:       MMETSP0890-20130614|7016_1  [L=856]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-19   67.9   0.0    1.1e-18   66.6   0.0    1.8  1  PF08373.5  RAP domain
    1.4e-16   59.8   0.8      0.054   13.0   0.0    7.9  8  PF06743.10 FAST kinase-like protein, subdomain 1
    5.5e-07   29.0   6.2        1.3    8.6   0.0    7.0  8  PF07671.6  Protein of unknown function (DUF1601)
    0.00017   21.3   3.0        1.5    8.6   0.1    6.1  7  PF10548.4  P22AR C-terminal domain
    0.00019   20.7   1.1    0.00068   18.9   0.0    2.5  3  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0     4e-22   1.1e-18       1      57 [.     691     748 ..     691     749 .. 0.98

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 4e-22
   PF08373.5   1 ieidGpthFyrns.gvllgktklKrriLtalGwkvisipyfeWnelqgkeekldYlke 57 
                 +e+dGp hF++n  ++ +g t++K+r+L+a Gw v++ipy+eW +l+++e k d+l++
  MMETSP0890-20130614|7016_1 691 VEFDGPWHFFSNMpEEATGRTRFKMRLLRATGWTVLHIPYYEWTNLKDDEAKRDHLRN 748
                 69******************************************************97 PP

>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0012       3.2      29      61 ..      39      71 ..      29      83 .. 0.86
   2 ?   -0.5   0.0      0.33   9.1e+02      35      49 ..      82      96 ..      77      98 .. 0.86
   3 !    8.2   0.0   0.00064       1.8      21      52 ..     119     150 ..     115     152 .. 0.88
   4 ?    1.6   0.0     0.073     2e+02      27      53 ..     257     283 ..     246     286 .. 0.84
   5 !   13.0   0.0     2e-05     0.054       4      55 ..     274     322 ..     271     330 .. 0.85
   6 !    8.5   0.0   0.00052       1.4       1      52 [.     346     395 ..     346     400 .. 0.94
   7 !    8.1   0.0    0.0007       1.9      21      52 ..     403     434 ..     396     444 .. 0.89
   8 ?    3.1   0.0     0.025        68      31      62 ..     527     557 ..     518     562 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0012
  PF06743.10 29 lereLdsispelllnlvwSlclleyfpvellnk 61
                  r ++ ++p++l nl w+l+ ++   ++l+ +
  MMETSP0890-20130614|7016_1 39 ALRVMPDFKPQELANLAWALATAGIWTEALVEA 71
                5678999***************99999988876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.33
  PF06743.10 35 sispelllnlvwSlc 49
                +++p+++ nl+wS++
  MMETSP0890-20130614|7016_1 82 EFRPQEMSNLLWSYA 96
                79999999*****97 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00064
  PF06743.10  21 ffeklasalereLdsispelllnlvwSlclle 52 
                 f ++ + ++++++++++p++l n+vw+ +  +
  MMETSP0890-20130614|7016_1 119 FANVTHGCVKQNFKGFKPQELANIVWAVATCG 150
                 6778889999*****************98765 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.073
  PF06743.10  27 salereLdsispelllnlvwSlclley 53 
                 +  +r ++++++++  n+ w+++ l+y
  MMETSP0890-20130614|7016_1 257 RLTQRRIHEFNSQEIGNMAWAYATLKY 283
                 5567899****************9998 PP

  == domain 5    score: 13.0 bits;  conditional E-value: 2e-05
  PF06743.10   4 lllpfarLNYkPpnaeeffeklasalereLdsispelllnlvwSlclleyfp 55 
                 + +++a+L Y+    + ff++la+a +  L+++  ++l n++w+++ +++ +
  MMETSP0890-20130614|7016_1 274 MAWAYATLKYR---DDDFFDSLAKAATPLLPHFVAQNLANTLWAFASVGRKN 322
                 66788888886...677****************************9887655 PP

  == domain 6    score: 8.5 bits;  conditional E-value: 0.00052
  PF06743.10   1 lsklllpfarLNYkPpnaeeffeklasalereLdsispelllnlvwSlclle 52 
                 ++++l++fa+   +Pp+  ++++++++     Ld++  + l nl w+l+ ++
  MMETSP0890-20130614|7016_1 346 IANMLWAFATAGAEPPK--QLLNAFVETSANRLDTFADQGLSNLIWALSAMG 395
                 689**************..799**************************9986 PP

  == domain 7    score: 8.1 bits;  conditional E-value: 0.0007
  PF06743.10  21 ffeklasalereLdsispelllnlvwSlclle 52 
                 f   +a++l+   ++++p++l n+vw+++ +e
  MMETSP0890-20130614|7016_1 403 FCAQIAQVLTIRVKHLQPQALSNVVWAFANAE 434
                 88899***********************9766 PP

  == domain 8    score: 3.1 bits;  conditional E-value: 0.025
  PF06743.10  31 reLdsispelllnlvwSlclleyfpvellnkv 62 
                 +  +s  +++l nl w++++++++  +ll+ +
  MMETSP0890-20130614|7016_1 527 EA-NSWTSQELANLAWAYACADHVDWALLRFL 557
                 44.667799**************999988765 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.073     2e+02      26      36 ..      44      54 ..      39      54 .. 0.87
   2 ?   -1.0   0.0      0.45   1.2e+03      25      37 .]      80      92 ..      65      93 .. 0.67
   3 !    7.8   0.0   0.00082       2.2      21      36 ..     127     142 ..     125     143 .. 0.92
   4 ?   -3.0   0.1         2   5.5e+03      31      36 ..     226     231 ..     226     232 .. 0.85
   5 !    5.9   0.0    0.0033         9      23      35 ..     261     273 ..     251     274 .. 0.89
   6 ?   -0.3   0.1      0.29   7.9e+02      28      37 .]     303     312 ..     300     312 .. 0.86
   7 !    8.6   0.0   0.00047       1.3      27      37 .]     340     350 ..     323     350 .. 0.81
   8 ?   -4.2   0.0       4.6   1.3e+04       8      15 ..     418     425 ..     416     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.073
   PF07671.6 26 erFNpQsIANt 36
                + F+pQ+ AN+
  MMETSP0890-20130614|7016_1 44 PDFKPQELANL 54
                56********7 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.45
   PF07671.6 25 aerFNpQsIANtL 37
                +  F pQ+  N+L
  MMETSP0890-20130614|7016_1 80 VSEFRPQEMSNLL 92
                5678888888877 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00082
   PF07671.6  21 IrrnaerFNpQsIANt 36 
                 +++n   F+pQ+ AN+
  MMETSP0890-20130614|7016_1 127 VKQNFKGFKPQELANI 142
                 89*************8 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 2
   PF07671.6  31 QsIANt 36 
                 Q+IAN 
  MMETSP0890-20130614|7016_1 226 QNIANF 231
                 9****6 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0033
   PF07671.6  23 rnaerFNpQsIAN 35 
                 r++  FN+Q+I N
  MMETSP0890-20130614|7016_1 261 RRIHEFNSQEIGN 273
                 88999******88 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 0.29
   PF07671.6  28 FNpQsIANtL 37 
                 F +Q+ ANtL
  MMETSP0890-20130614|7016_1 303 FVAQNLANTL 312
                 779******9 PP

  == domain 7    score: 8.6 bits;  conditional E-value: 0.00047
   PF07671.6  27 rFNpQsIANtL 37 
                 +F+pQ+IAN L
  MMETSP0890-20130614|7016_1 340 AFKPQEIANML 350
                 7********87 PP

  == domain 8    score: -4.2 bits;  conditional E-value: 4.6
   PF07671.6   8 leeQrLsd 15 
                 l++Q Ls+
  MMETSP0890-20130614|7016_1 418 LQPQALSN 425
                 89**9996 PP

>> PF10548.4  P22AR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.22   6.1e+02       8      21 ..      46      59 ..      44      65 .. 0.84
   2 ?   -2.4   0.0       1.5   4.1e+03       6      20 ..      81      95 ..      77      97 .. 0.80
   3 ?   -1.8   0.0      0.96   2.6e+03       7      20 ..     133     146 ..     128     148 .. 0.80
   4 ?    2.8   0.0     0.035        96       6      23 ..     264     281 ..     260     295 .. 0.85
   5 ?    2.5   0.0     0.044   1.2e+02       7      23 ..     378     394 ..     373     427 .. 0.75
   6 ?   -2.2   0.0       1.3   3.5e+03       6      20 ..     478     492 ..     476     508 .. 0.83
   7 !    8.6   0.1   0.00056       1.5       6      68 ..     529     592 ..     525     595 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.22
   PF10548.4  8 fTeeElqsLvWlwf 21
                f  +El +L+W++ 
  MMETSP0890-20130614|7016_1 46 FKPQELANLAWALA 59
                6669*******975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.5
   PF10548.4  6 qefTeeElqsLvWlw 20
                 ef  +E+ +L+W +
  MMETSP0890-20130614|7016_1 81 SEFRPQEMSNLLWSY 95
                678889*******76 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.96
   PF10548.4   7 efTeeElqsLvWlw 20 
                  f  +El ++vW+ 
  MMETSP0890-20130614|7016_1 133 GFKPQELANIVWAV 146
                 67789*******85 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.035
   PF10548.4   6 qefTeeElqsLvWlwfaa 23 
                 +ef+ +E+ +++W++  +
  MMETSP0890-20130614|7016_1 264 HEFNSQEIGNMAWAYATL 281
                 69************9765 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.044
   PF10548.4   7 efTeeElqsLvWlwfaa 23 
                 +f ++ l +L+W++ a+
  MMETSP0890-20130614|7016_1 378 TFADQGLSNLIWALSAM 394
                 799**********9987 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 1.3
   PF10548.4   6 qefTeeElqsLvWlw 20 
                  +++ +E  +++W++
  MMETSP0890-20130614|7016_1 478 AQLNHQECSNVAWAL 492
                 689999999999986 PP

  == domain 7    score: 8.6 bits;  conditional E-value: 0.00056
   PF10548.4   6 qefTeeElqsLvWlwfaaermq.ellkelypaLkalgSnlagkvysiayEYrrtlekarkvLkr 68 
                 ++ T +El +L+W++  a ++  +ll+ l +   a    +++k++s+ yE    +e++ ++L r
  MMETSP0890-20130614|7016_1 529 NSWTSQELANLAWAYACADHVDwALLRFLWSSIVARAQAFHNKIISNNYELTEPSEINDEILCR 592
                 66799**********9999986478999999999999999999999999999999999998876 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   3.5e+03      13      21 ..     659     667 ..     658     667 .. 0.86
   2 !   18.9   0.0   2.5e-07   0.00068       1      19 [.     802     820 ..     802     822 .. 0.95
   3 ?   -1.9   0.0      0.86   2.4e+03      24      34 ..     831     841 ..     825     841 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.3
                 HHHTT---- CS
  PF02037.22  13 LkkrGLpts 21 
                 Lk++GL+++
  MMETSP0890-20130614|7016_1 659 LKQLGLRVT 667
                 99****986 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.5e-07
                 HTT--HHHHHHHHHHTT-- CS
  PF02037.22   1 lskltVaeLKaeLkkrGLp 19 
                 +s+l+V+eL++++++rG++
  MMETSP0890-20130614|7016_1 802 YSSLRVSELRQLCEARGID 820
                 89***************98 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.86
                 HHHHHHHHHHH CS
  PF02037.22  24 KaeLieRLkeh 34 
                 +++L  RL+eh
  MMETSP0890-20130614|7016_1 831 RTVLERRLREH 841
                 7899*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       733  (0.0536132); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.29u 0.39s 00:00:01.68 Elapsed: 00:00:00.99
# Mc/sec: 2072.00
//
Query:       MMETSP0890-20130614|7020_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.7   0.0      0.036   13.4   0.0    1.2  1  PF07258.9 HCaRG protein


Domain annotation for each model (and alignments):
>> PF07258.9  HCaRG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-06     0.036     123     175 ..      23      80 ..       4      82 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.6e-06
   PF07258.9 123 lssselqevnsPvilleLklqng......ggssetvtfelseeklqellkelkeaqkel 175
                 +  ++ +++ +P++ + Lk+++       ++++   +fe+s   l+++l+ + +++++l
  MMETSP0890-20130614|7020_1  23 MRVKT-TSMGQPSVAVDLKVRDQpsrqgiQPETRLESFEMSPGVLEVMLEGFGRIRDQL 80 
                 33333.35789**************99999999999********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 302.31
//
Query:       MMETSP0890-20130614|7019_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-17   61.9   0.1    3.2e-17   61.9   0.1    2.6  2  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.5      0.08   1.1e+03      27      61 ..      50      93 ..      41      96 .. 0.70
   2 !   61.9   0.1   2.3e-21   3.2e-17       2      63 ..     233     298 ..     232     299 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.08
                HT-TTT--SCC.........HHHHHHHHHHHHHHHHHTSHHHHH CS
  PF00226.26 27 kyHPDknkdde.........eeaeekfkeineAyevLsdpekra 61
                ++   +  + +         ee+++k  e   A   L d+++r 
  MMETSP0890-20130614|7019_1 50 RLKREHEAQRKlaeqkrafmEEEKRKNDEALRAKRKLDDELRRL 93
                55555544444666667777788999999999999999999985 PP

  == domain 2    score: 61.9 bits;  conditional E-value: 2.3e-21
                 HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC....HHHHHHHHHHHHHHHHHTSHHHHHHH CS
  PF00226.26   2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde....eeaeekfkeineAyevLsdpekraey 63 
                 ++ iL+++++as  +Ik a+r+la++ HPDk    +    +++++kf +i+eAye+L+dp +r +y
  MMETSP0890-20130614|7019_1 233 HFRILELDPNASTPDIKGAFRRLAKTMHPDKTITASpgtqQAKTDKFLQIKEAYEALKDPASRHRY 298
                 899****************************88877999999*********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2181  (0.159523); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.46s 00:00:01.46 Elapsed: 00:00:00.95
# Mc/sec: 776.92
//
Query:       MMETSP0890-20130614|7022_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-07   29.6   0.1      1e-06   28.4   0.0    1.6  2  PF00453.13 Ribosomal protein L20
  ------ inclusion threshold ------
      0.063   12.0   0.0      0.077   11.7   0.0    1.1  1  PF09556.5  HaeIII restriction endonuclease


Domain annotation for each model (and alignments):
>> PF00453.13  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.5e-10     1e-06      78     107 ..       2      31 ..       1      32 [. 0.94
   2 ?   -1.9   0.0       0.4   2.8e+03      11      29 ..      49      67 ..      44      73 .. 0.70

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.5e-10
                 HH---TTSTTTTSCTTHHHHHCCSHHHHHH CS
  PF00453.13  78 fingLkkanielnRkvLaelaindpeaFkk 107
                 fi gL++ani+lnRkvLa++a+++p +F++
  MMETSP0890-20130614|7022_1   2 FIAGLNNANIDLNRKVLADMAMTEPLSFRS 31 
                 9*************************9986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.4
                HHHHHHHCCT------TTT CS
  PF00453.13 11 krrkkilklakgfrgarsk 29
                k + +i +  kgf g  ++
  MMETSP0890-20130614|7022_1 49 KTKVNISDTEKGFLGDWRH 67
                4556677788899887765 PP

>> PF09556.5  HaeIII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05     0.077      50      99 ..      27      74 ..      11      79 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
   PF09556.5 50 ksakaairlilrlePlleeildnvqltlsiqedakGelGdvrdiliireq 99
                +s ++ i+++ +++P l++  +n + +++i + +kG lGd r +l   e 
  MMETSP0890-20130614|7022_1 27 LSFRSVIEVVSKVDPYLSQ--NNLKTKVNISDTEKGFLGDWRHVLTEEEI 74
                5667889************..999*********************88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.88
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|7018_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-41  141.2   0.7    7.1e-39  133.3   0.0    4.2  3  PF07724.9  AAA domain (Cdc48 subfamily)
    1.8e-23   83.0   0.9    5.5e-13   49.1   0.0    3.4  4  PF00004.24 ATPase family associated with various cellular activities (AAA)
      3e-15   56.0   0.1    3.9e-10   39.4   0.0    3.9  2  PF07728.9  AAA domain (dynein-related subfamily)
    8.3e-12   44.7   2.0    1.9e-11   43.6   0.3    2.6  1  PF10431.4  C-terminal, D2-small domain, of ClpB protein
    7.2e-11   41.7   0.1    7.2e-06   25.4   0.0    3.3  3  PF00158.21 Sigma-54 interaction domain
    1.2e-09   37.7   1.6      0.003   16.8   0.0    4.2  4  PF01695.12 IstB-like ATP binding protein
    8.6e-09   35.4   3.7     0.0065   16.4   0.0    4.6  3  PF13401.1  AAA domain
    1.3e-08   35.4   4.2     0.0018   18.9   0.0    4.7  4  PF13207.1  AAA domain
    1.4e-08   35.1  13.6    5.7e-07   29.9   0.2    4.4  3  PF13191.1  AAA ATPase domain
    1.6e-07   31.6   0.0      0.031   14.4   0.0    3.3  2  PF13238.1  AAA domain
    1.8e-07   31.0   0.0      0.018   14.7   0.0    4.0  4  PF13173.1  AAA domain
    1.2e-06   28.0   0.5      0.096   12.3   0.0    3.5  3  PF13245.1  Part of AAA domain
    1.5e-05   24.8   0.2        1.1    8.9   0.0    4.4  4  PF04851.10 Type III restriction enzyme, res subunit
    6.2e-05   22.0   1.4      0.016   14.1   0.0    3.1  3  PF06414.7  Zeta toxin
    0.00064   18.8   2.6       0.42    9.6   0.0    4.0  4  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00066   19.7   0.0        2.6    8.1   0.0    3.3  3  PF00910.17 RNA helicase
     0.0042   16.3   9.1       0.92    8.7   0.0    4.4  5  PF13481.1  AAA domain
     0.0042   16.5   0.1        1.7    8.1   0.0    3.4  3  PF07726.6  ATPase family associated with various cellular activities (AAA)
     0.0053   16.3   0.6        5.4    6.5   0.1    4.5  3  PF01637.13 Archaeal ATPase
     0.0054   16.5   1.5        6.1    6.6   0.0    3.9  3  PF13671.1  AAA domain
     0.0058   16.1   0.1        2.2    7.7   0.0    3.2  2  PF05729.7  NACHT domain
     0.0078   15.7   0.0       0.28   10.7   0.0    3.4  3  PF13177.1  DNA polymerase III, delta subunit
     0.0087   15.4   0.0        1.8    7.8   0.0    3.1  2  PF00448.17 SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.037   13.1   0.0      0.037   13.1   0.0    4.3  5  PF12846.2  AAA-like domain
      0.067   12.8   0.0      0.067   12.8   0.0    3.3  3  PF01935.12 Domain of unknown function DUF87
      0.069   12.9   8.5       0.55   10.0   0.0    4.0  3  PF13521.1  AAA domain
       0.13   12.4  11.2       0.67   10.1   0.0    4.1  3  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.17        87       4      77 ..     223     302 ..     220     318 .. 0.62
   2 ?   -1.5   0.1       3.5   1.8e+03      30      58 ..     567     595 ..     545     605 .. 0.72
   3 !  133.3   0.0   1.4e-41   7.1e-39       1     170 [.     646     789 ..     646     790 .. 0.98

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.17
                 --EEEE-------HHHHHHHH.HHTT-.........--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETG CS
   PF07724.9   4 isilllgptgvGktelakala.ellfv.....kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEi 77 
                  + +l+g  gvGkt +a+ la ++l+       ++ +l  +d  +l+ +   +   +  + a  + ++++ + i+++DEi
  MMETSP0890-20130614|7018_1 223 NNPILVGAPGVGKTAIAEGLAiRILDKevpesLRKIRLYALDLGALIAGASGRGAFEARLKAVIAEIEQNPHAILFIDEI 302
                 56678899999999988887724444333333334445555555555555555555555555555566666668888888 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3.5
                 ....--EEEEGGG-------THHHHHHHH CS
   PF07724.9  30 kkekkliradaselleeeevehlvsrlig 58 
                 ++++   r+ as+l ++++v+++vsr + 
  MMETSP0890-20130614|7018_1 567 QTTQGNNRFSASDLVTADDVATIVSRATN 595
                 4556677899999999999*999999875 PP

  == domain 3    score: 133.3 bits;  conditional E-value: 1.4e-41
                 -----EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--............-EEEETGGG----------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT-----E CS
   PF07724.9   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEllgRlpe 170
                 rp ++++llgptgvGkte+akala  lf +++ +++ +d+se++e    +h+vs+ligappgy+g++egG            +vllDE +K+h+           +V++ +Lq+l++g+ltd++g+++d++++ +I+t+++  ++ s+                      +++pE+l+Rl+ 
  MMETSP0890-20130614|7018_1 646 RPRGTFMLLGPTGVGKTETAKALAFELF-GDDAAIVHLDMSEFAE----RHTVSKLIGAPPGYIGFDEGGqlteavrrrpysVVLLDEAEKAHH-----------DVFNTFLQVLDEGRLTDAKGHRIDFTHTYIILTSNLPYAQVSK----------------------FFRPEFLNRLDH 789
                 57899***********************.9***************....*********************************************...........******************************************9......................8*********97 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.1e-15   5.5e-13       2     124 ..     226     356 ..     225     362 .. 0.81
   2 ?   -2.5   0.0       9.7   4.9e+03      81     123 ..     437     483 ..     416     494 .. 0.70
   3 ?   -2.1   0.1       7.2   3.6e+03      30      83 ..     475     525 ..     460     563 .. 0.69
   4 !   30.6   0.0   5.8e-10   2.9e-07       2     112 ..     652     771 ..     651     794 .. 0.74

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.1e-15
                 EEE-------HHHHHHHHHHC..........THEEEEEECCSSS..SST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS...GGGS-HHHHH.TTS CS
  PF00004.24   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr...pdkldpallr.gRf 124
                 +l+G pG+GKT++a+ +a  +          +++++ +++  l+   +  g+ e+++++++ e++++  + ilfiDEi++l+++   s+ +++ +++n L ++l + +       vigat++    + +++ +   +Rf
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRIldkevpeslrKIRLYALDLGALIagASGRGAFEARLKAVIAEIEQNP-HAILFIDEIHSLIGAG--SQGNQALDAANLLKPALAKGTM-----RVIGATTTieyTKYIQKDMAFaRRF 356
                 79****************99767766766667999999999999655599**************9986.7**************9..8888999999999999998877.....6999999855333344433344555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 9.7
                 HCHHHHHHHHHHHHHTTTT....S.TEEEEEE-SSGGGS-HHHHHTT CS
  PF00004.24  81 eeervvnqLlteldgvkkk....eskvivigatnrpdkldpallrgR 123
                 + er vn+L  el+ ++++    +s ++    ++r +  d++l+ +R
  MMETSP0890-20130614|7018_1 437 SLERKVNELSGELESLRNEqnlqSSGFFASFLSTRAELSDEKLRARR 483
                 45677788888888777776666556777778888888888887434 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 7.2
                 ECCSSSSST-HHHHHHHHHHHHHHHHTS....-SEEEEEETGGGC-HHHSS..TTHCH CS
  PF00004.24  30 sgsellskyvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeee 83 
                 s  +l+   + e e+k + +f++  ++a    ++  ++ DE+  l+k+       ++ 
  MMETSP0890-20130614|7018_1 475 SDEKLRARRIHELEEKYALTFQAR-NEAravwQQEKVLYDELRTLNKDI------QAA 525
                 555666667778888888888764.334478766667778888887776......222 PP

  == domain 4    score: 30.6 bits;  conditional E-value: 5.8e-10
                 EEE-------HHHHHHHHHHC...THEEEEEECCSSSSS............T-HHHHH.HHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT.........S.TEEEEEE-SSG CS
  PF00004.24   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesek.kirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk.........eskvivigatnrp 112
                 +l Gp G+GKT +aka+a el   ++ ++ +++se+ +             y+g  e  ++ e +++    + p s++++DE+++ + +            +n++l++ld+ +           ++ + +i+++n p
  MMETSP0890-20130614|7018_1 652 MLLGPTGVGKTETAKALAFELfgdDAAIVHLDMSEFAERhtvskligappgYIGFDEGgQLTEAVRR----R-PySVVLLDEAEKAHHDV-----------FNTFLQVLDEGRLTdakghridfTH-TYIILTSNLP 771
                 799*****************97666999999999999667999988888886654443033333332....2.669**********7777...........*********9999888888888555.8888888884 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00023      0.12       3      26 ..     226     250 ..     224     306 .. 0.78
   2 !   39.4   0.0   7.8e-13   3.9e-10       2     129 ..     651     776 ..     650     787 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00023
                 EEE------HHHHHHHGGGGB.S-- CS
   PF07728.9   3 lLvGppGtgKselaerlaeal.nre 26 
                 +LvG+pG+gK+ +ae la ++  +e
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRIlDKE 250
                 8**************9998876444 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 7.8e-13
                 EEEE------HHHHHHHGGGGB...S--EEEEE--TT--HHHH---B--..........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT CS
   PF07728.9   2 vlLvGppGtgKselaerlaeal...nreveyvqltrdtteedlkgrreiangttslvd.splvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrsln 129
                 ++L+Gp+G+gK+e a+ la  l    + ++   ++++ ++  +   +   +g   + + + l++a+r    ++++lDE e+a+ +v+n++l++l+e rl+ +  g+++++         +++i t+n ++ +++
  MMETSP0890-20130614|7018_1 651 FMLLGPTGVGKTETAKALAFELfgdDAAIVHLDMSEFAERHTVSKLIGAPPGYIGFDEgGQLTEAVRrrPYSVVLLDEAEKAHHDVFNTFLQVLDEGRLT-DAKGHRIDFTH-------TYIILTSNLPYAQVS 776
                 79*****************99996666666666777777777777777667777775527899999998889***************************9.88888998987.......899999999984443 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.3   3.7e-14   1.9e-11       1      75 [.     796     873 ..     796     878 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 3.7e-14
                 --HHHHHHHHHHHHHHHHHHHHT.TT-EEEE-HHHHHHHHC----T..T---TTHHHHHHHHTHHHHHHHHH------ CS
   PF10431.4   1 LskeelkkIvdlqlkklekrlae.rgveleltdealdalaekgydp..eyGARpLrriiereiedplaelilsgelke 75 
                 L++++l +I++ +++ l k+ ++ ++v+l+++++a +a++++  d+   yGARpLrr++++ + + la+ ilsg+ +e
  MMETSP0890-20130614|7018_1 796 LDMNALISIAKTHVAALGKMARDeHQVNLNISQAAAEAIVRANADEiqIYGARPLRRFVDQVLATDLARIILSGDTSE 873
                 78999****************98799****************9996337*************************9776 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         8   4.1e+03     104     121 ..      95     112 ..      78     122 .. 0.73
   2 !   12.3   0.0   0.00015     0.075       4     106 ..     206     306 ..     203     347 .. 0.67
   3 !   25.4   0.0   1.4e-08   7.2e-06      15     165 ..     641     790 ..     628     792 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 8
                 ---HHHHHHHHHHHH--- CS
  PF00158.21 104 elplelQekLlrvlqege 121
                 +l+ ++Qe L rv qe++
  MMETSP0890-20130614|7018_1  95 RLSRSTQEVLQRVFQEKK 112
                 567777777777777765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00015
                 -SHHHHHHHHHHHHHTTS-S-EEEE-------HHHHHHHHH..TSTTTTS--EEEETTTS-HHHHHHHH------------S-----TTTG----EEEET----- CS
  PF00158.21   4 esealkelleqikkvaktdltvlitGesGtGKellAraihe..askrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekkGlfekadgGtLfLDeigelp 106
                 ++e +++l++ +++   ++ + +++G  G+GK+ +A+ +      k+  +++ ++   a+    l +      +GaF    k+    +e+  + +Lf+Dei++l 
  MMETSP0890-20130614|7018_1 206 RDEVIRRLIQILARR--KKNNPILVGAPGVGKTAIAEGLAIriLDKEVPESLRKIRLYALDLGALIAG--ASGRGAFEARLKAVIAEIEQNPHAILFIDEIHSLI 306
                 555555555555443..34556778***********98876224444455566666666654433332..3569****9999999*****************985 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 1.4e-08
                 HHHHTTS-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH------------S---..--TTTG----EEEET-----HHHHHHHHHHHH---BE------EB-----EEEE-SS-HHHHHH-----HHHHHH--BE CS
  PF00158.21  15 ikkvaktdltvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekk..GlfekadgGtLfLDeigelplelQekLlrvlqegeverlGsekeikvdvriiaatnedleeaveegkfredLyyrlnvv 165
                 +++ a+ + t +++G +G+GK+  A+a+  +   +++ +v++++++++e+   s+L G   G + G ++ ++   ++++   ++++LDe ++   ++ + +l+vl+eg+++   +++   +++ ii ++n     a  ++ fr +++ rl  +
  MMETSP0890-20130614|7018_1 641 LQSSARPRGTFMLLGPTGVGKTETAKALAFELFGDDAAIVHLDMSEFAERHTVSKLIGAPPG-YIGFDEGGQltEAVRRRPYSVVLLDEAEKAHHDVFNTFLQVLDEGRLTDAKGHRIDFTHTYIILTSNL--PYAQVSKFFRPEFLNRLDHI 790
                 55666777899*****************999999*************************999.77876655444567777789**************************9999888888788888877664..44444559999999999765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.9e-06     0.003      36     104 ..     211     283 ..     205     312 .. 0.69
   2 ?   -0.1   0.1      0.92   4.7e+02      70     108 ..     502     540 ..     499     545 .. 0.88
   3 !   15.0   0.0   2.2e-05     0.011      49      87 ..     650     688 ..     623     698 .. 0.87
   4 ?    0.2   0.0      0.78     4e+02     140     159 ..     761     780 ..     756     791 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.9e-06
  PF01695.12  36 kelaslsfveqaenlvllGpsGvGKthlAialgveavragl....svlfvrledLveeLkrakgdgrleralk 104
                 ++l++    ++++n +l+G +GvGKt +A +l+++  ++++    +   + + dL + ++ a g g +e +lk
  MMETSP0890-20130614|7018_1 211 RRLIQILARRKKNNPILVGAPGVGKTAIAEGLAIRILDKEVpeslRKIRLYALDLGALIAGASGRGAFEARLK 283
                 5555555568999********************9887765411112222223456666666666666666655 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.92
  PF01695.12  70 eavraglsvlfvrledLveeLkrakgdgrleralkrlak 108
                 +av ++ +vl+ +l  L + +++a+++  + ++++r+  
  MMETSP0890-20130614|7018_1 502 RAVWQQEKVLYDELRTLNKDIQAAEAQHAALQRMNRFGD 540
                 6899999********************999999998765 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 2.2e-05
  PF01695.12  49 nlvllGpsGvGKthlAialgveavraglsvlfvrledLv 87 
                  ++llGp+GvGKt  A al+ e   ++ +++++ ++++ 
  MMETSP0890-20130614|7018_1 650 TFMLLGPTGVGKTETAKALAFELFGDDAAIVHLDMSEFA 688
                 689*******************99999999988887765 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.78
  PF01695.12 140 rrsiiltsnlpfsewdevfg 159
                 ++ iiltsnlp ++ ++ f 
  MMETSP0890-20130614|7018_1 761 HTYIILTSNLPYAQVSKFFR 780
                 6789*********9999886 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-05    0.0065       7     105 ..     225     317 ..     218     346 .. 0.80
   2 ?   -1.8   0.0       5.3   2.7e+03      68      98 ..     386     440 ..     334     462 .. 0.53
   3 !   15.9   0.0   1.9e-05    0.0094       5     113 ..     649     746 ..     645     765 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.3e-05
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL.....s.eeale 105
                  +++G +GvGKT  ++ la             r++  e+p+s  +  l+   l+al  +a+gr+  e+ l+a+   ++++ + +l iDE++ L     +  +al+
  MMETSP0890-20130614|7018_1 225 PILVGAPGVGKTAIAEGLAI------------RILDKEVPESLRKIRLYALDLGALIAGASGRGAFEARLKAVIAEIEQNPHAILFIDEIHSLigagsQgNQALD 317
                 589***********999988............588889999999999999999999999999778888889*********************9886641444433 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 5.3
   PF13401.1  68 g....................rltteellealqealrrrrt....rlliiDEaqr 98 
                                      r++ ++ l+ + e ++r+r+    r  ++D ++r
  MMETSP0890-20130614|7018_1 386 VrildealfaaasmanryisgRANPDKALDLIDECAARKRVeldsRPAVLDSLER 440
                 2333333333333333344444444444455555555555555555555555555 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.9e-05
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrslldd 113
                 g  ++ G++GvGKT +++ la +l        +a +v+ + ++ ++ +++ + + +  g+   +         +l+ea+rrr   ++++DEa+  + ++++++   ld 
  MMETSP0890-20130614|7018_1 649 GTFMLLGPTGVGKTETAKALAFELFGD-----DAAIVHLDMSEFAERHTVSKLIGAPPGYIGFD------EGGQLTEAVRRRPYSVVLLDEAEKAHHDVFNTFLQVLDE 746
                 667899***************998644.....88888888888885555555555555544444......447999******************999999999888883 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0014      0.69       3      23 ..     226     246 ..     225     330 .. 0.69
   2 ?   -0.8   0.4       4.5   2.3e+03     119     119 ..     491     491 ..     376     615 .. 0.63
   3 !   18.9   0.0   3.6e-06    0.0018       5      33 ..     654     687 ..     651     770 .. 0.76
   4 ?    3.3   0.0      0.24   1.2e+02      17      77 ..     785     846 ..     782     915 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0014
                 --B--TT---HHHHHHHHHHS CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl 23 
                 +++G+pG+GK+ +a+ La r 
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRI 246
                 578************998653 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 4.5
                 H CS
   PF13207.1 119 r 119
                 +
  MMETSP0890-20130614|7018_1 491 Y 491
                 1 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 3.6e-06
                 B--TT---HHHHHHHHHHS...TEEEEEGGG..B CS
   PF13207.1   5 tGppGsGKsTlakeLaerl...glpvlsldd..l 33 
                  Gp+G+GK+  ak+La +l   +  +++ld+  +
  MMETSP0890-20130614|7018_1 654 LGPTGVGKTETAKALAFELfgdDAAIVHLDMseF 687
                 5*****************9988666667766213 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.24
                 HHHHHHSTEEEEEGGG.B-....-GGGS-B-----B--SSGGGB-HHHHHHHH......H..HHHHHH CS
   PF13207.1  17 keLaerlglpvlsldd.ll....reeglkelddgereskdadadllaaildglaa..kkdtlswvidg 77 
                 ++L   l +++l++++ +     +   ++ l +  r+ ++ ++++ +a ++++ +   ++   + i g
  MMETSP0890-20130614|7018_1 785 NRLDHILQYNHLDMNAlISiaktH---VAALGKMARDEHQVNLNISQAAAEAIVRanADE---IQIYG 846
                 5666678899******55245552...334444444446666666666666553333333...66666 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       6.2   3.1e+03      81      81 ..     145     145 ..      57     197 .. 0.51
   2 !   29.9   0.2   1.1e-09   5.7e-07       2     127 ..     203     328 ..     202     401 .. 0.75
   3 !   12.6   0.1   0.00023      0.12      16      62 ..     641     687 ..     619     751 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 6.2
   PF13191.1  81 q 81 
                 +
  MMETSP0890-20130614|7018_1 145 K 145
                 1 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.1e-09
   PF13191.1   2 lvGRereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga...........lipelegiiglqalvalldaalar 127
                 ++GR++ +++L + l+r    +p  +++G++G+GK+++++ la +il++++ +   k++++  +         l +l++  +++ a e++  +  ++   ++           li ++++     ++++ll +ala+
  MMETSP0890-20130614|7018_1 203 VIGRDEVIRRLIQILARRKKNNP--ILVGAPGVGKTAIAEGLAIRILDKEVPESLRKIRLYALD---------LGALIAGASGRGAFEARLKAVIAEIEQNPhailfideihsLIGAGSQGNQALDAANLLKPALAK 328
                 78**************9999885..589*******************************99999.........4444444444444444433333333333344444444455555566666666666666666655 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 0.00023
   PF13191.1  16 lrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdql 62 
                 l++++++++ + ++Gp G+GK+  +++la +++ ++++  +   +++
  MMETSP0890-20130614|7018_1 641 LQSSARPRGTFMLLGPTGVGKTETAKALAFELFGDDAAIVHLDMSEF 687
                 444444555899***************77777777766655554444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.1e-05     0.031       2      80 ..     226     301 ..     226     315 .. 0.81
   2 !   13.3   0.0   0.00013     0.068       3      23 ..     653     680 ..     652     730 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.1e-05
   PF13238.1   2 litGtpGvGKtTlakeLaerl.gdvlrdlakengleeevddk.idtkeskeldedkldelldkleeneselaegenviidg 80 
                 +++G+pGvGKt +a+ La r+  + + + + +  l+  +    i+ ++ + + e +l++++ ++e+n++      ++ id 
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRIlDKEVPESLRKIRLYALDLGAlIAGASGRGAFEARLKAVIAEIEQNPH-----AILFIDE 301
                 689**************9998888888888888888777777788888899999999999999999875.....5555555 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 0.00013
   PF13238.1   3 itGtpGvGKtTlakeLaerl.......g 23 
                 + G++GvGKt++ak+La +l       +
  MMETSP0890-20130614|7018_1 653 LLGPTGVGKTETAKALAFELfgddaaiV 680
                 67***************99886655552 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.6e-05     0.018       6      85 ..     226     317 ..     221     323 .. 0.69
   2 ?    0.2   0.0       1.1   5.8e+02      13      70 ..     334     392 ..     323     417 .. 0.66
   3 !    9.9   0.0    0.0012       0.6       5      74 ..     651     733 ..     647     766 .. 0.62
   4 ?   -1.8   0.0       4.7   2.4e+03      68     100 ..     840     873 ..     817     885 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.6e-05
   PF13173.1   6 vitGpRrvGKttllkqlakell......keesilyinlddeel......rkladpe..llelfleklkekkkylflDEiqevpewedalkslvd 85 
                 ++ G+ +vGKt +++ la + l      + ++i  ++ld  +l      r   ++e  l+ ++ e +++ + +lf+DEi+ + ++ +  ++ +d
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRILdkevpeSLRKIRLYALDLGALiagasgRG--AFEarLKAVIAEIEQNPHAILFIDEIHSLIGAGSQGNQALD 317
                 899************999888888855544555555666655555443311..33343556666655567899********9988887777776 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.1
   PF13173.1  13 vGKttllkqlakell.....keesilyinlddeelrkladpellelfleklkekkkylflDEi 70 
                 +G tt+++    +++       +++  i+ ++++ ++   + +l+ ++ek+++++ + +lDE+
  MMETSP0890-20130614|7018_1 334 IGATTTIEYT--KYIqkdmaFARRFQKIDIEEPSIEATV-S-ILRGLREKYQSHHGVRILDEA 392
                 5666665322..223111233344555555555554422.2.789999998889999****97 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0012
   PF13173.1   5 lvitGpRrvGKttllkqlakell.keesilyinlddeelrkladpe...........llelfleklke........kkky..lflDEiqevp 74 
                  ++ Gp +vGKt ++k la el+ ++  i+ +++ + ++r    ++                 e   +        ++ y  ++lDE+ ++ 
  MMETSP0890-20130614|7018_1 651 FMLLGPTGVGKTETAKALAFELFgDDAAIVHLDMSEFAERHTV-SKligappgyigfD-----E---GgqlteavrRRPYsvVLLDEAEKAH 733
                 6799***************999977777777777775553322.11233323333321.....1...0112223333333348888887774 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 4.7
   PF13173.1  68 DEiqev..pewedalkslvddgrnldviltGsnsk 100
                 DEiq +  + +++++++++ ++   ++il+G  s 
  MMETSP0890-20130614|7018_1 840 DEIQIYgaRPLRRFVDQVLATD-LARIILSGDTSE 873
                 7888772234555555555544.458888886654 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       9.9     5e+03      48      63 ..     153     172 ..     125     184 .. 0.59
   2 !   12.3   0.0   0.00019     0.096       8      61 ..     220     285 ..     212     306 .. 0.62
   3 !   12.0   0.0   0.00023      0.12       7      36 ..     645     674 ..     639     692 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 9.9
   PF13245.1  48 vaptgraakrlserl....l 63 
                 v  t+r+a+++++       
  MMETSP0890-20130614|7018_1 153 VKLTTRQAAQIASNKqaanD 172
                 55678888887555444444 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00019
   PF13245.1   8 a..gnpllvvtGgPGtGKTttlaaiiaall.............aarekp.grsvllvaptgraakrlser 61 
                 +  +np+lv  G PG GKT+ +  ++ ++l             +  + + g+ +  +++ g++ +rl+++
  MMETSP0890-20130614|7018_1 220 RkkNNPILV--GAPGVGKTAIAEGLAIRILdkevpeslrkirlY--ALDlGALIAGASGRGAFEARLKAV 285
                 245688888..********5555555555577777777777442..345554444445555555555555 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00023
   PF13245.1   7 lagnpllvvtGgPGtGKTttlaaiiaalla 36 
                 +++++ +++ G+ G GKT+t+ a++ +l+ 
  MMETSP0890-20130614|7018_1 645 ARPRGTFMLLGPTGVGKTETAKALAFELFG 674
                 557788999****************99993 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       4.9   2.5e+03     102     134 ..     141     174 ..     132     190 .. 0.72
   2 !    8.8   0.0    0.0024       1.2      10      44 ..     208     241 ..     204     257 .. 0.88
   3 ?    0.6   0.0      0.75   3.8e+02     142     163 ..     289     310 ..     273     342 .. 0.71
   4 !    8.9   0.0    0.0021       1.1       8      51 ..     623     674 ..     620     689 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 4.9
  PF04851.10 102 kdkeekkkkdkeiilttiqklhkaleeeeend.e 134
                 k  e++++++ ++ ltt q  + a++++  nd e
  MMETSP0890-20130614|7018_1 141 KIIEKSGTTVDKVKLTTRQAAQIASNKQAANDpE 174
                 5557788899999999999999998887777644 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0024
  PF04851.10  10 eaienllesiekedekkrglivmaTGtGKTlvaas 44 
                 e+i++l++++ +  +k++ ++v a G+GKT +a  
  MMETSP0890-20130614|7018_1 208 EVIRRLIQILARR-KKNNPILVGAPGVGKTAIAEG 241
                 789********99.99***************9865 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.75
  PF04851.10 142 alldefdviiiDEaHrlsakkk 163
                   ++ + +++iDE H l    +
  MMETSP0890-20130614|7018_1 289 IEQNPHAILFIDEIHSLIGAGS 310
                 56777889*******9877665 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0021
  PF04851.10   8 Qeeaienllesieke........dekkrglivmaTGtGKTlvaasliarlar 51 
                 Q++a +++++s+ ++        + +  +++  +TG+GKT +a +l+ +l+ 
  MMETSP0890-20130614|7018_1 623 QRQATDAIAASVLRSraglqssaRPRGTFMLLGPTGVGKTETAKALAFELFG 674
                 778888888777777788888666677788999**********999999875 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.014       7.1      17      37 ..     223     243 ..     211     251 .. 0.81
   2 ?   -3.1   0.2       6.1   3.1e+03     164     164 ..     511     511 ..     467     556 .. 0.49
   3 !   14.1   0.0   3.2e-05     0.016      10      58 ..     641     701 ..     632     754 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.014
   PF06414.7  17 kavllgGqpGAGKtslaelll 37 
                    +l+G pG GKt++ae l 
  MMETSP0890-20130614|7018_1 223 NNPILVGAPGVGKTAIAEGLA 243
                 55689***********99765 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 6.1
   PF06414.7 164 a 164
                  
  MMETSP0890-20130614|7018_1 511 L 511
                 2 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 3.2e-05
   PF06414.7  10 vpeqekpka.vllgGqpGAGKtslaellleela..agnivridaDelrkyh.........p 58 
                 ++++++p+  ++l G++G GKt++a++l  el   +  iv++d  e+ ++h         p
  MMETSP0890-20130614|7018_1 641 LQSSARPRGtFMLLGPTGVGKTETAKALAFELFgdDAAIVHLDMSEFAERHtvskligapP 701
                 55667776515568***************999989999*********99995555555543 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00083      0.42      11      45 ..     210     245 ..     200     265 .. 0.70
   2 ?   -0.1   0.0      0.76   3.9e+02      33      94 ..     273     337 ..     264     343 .. 0.68
   3 ?    5.3   0.1     0.016       8.3      17      43 ..     643     669 ..     620     695 .. 0.82
   4 ?   -1.3   0.0       1.8     9e+02     108     139 ..     722     753 ..     688     771 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00083
  PF01078.16  11 akraleiaaa.GgHnlllvGppGsGKtmlakrlpsl 45 
                  +r ++i a   + n +lvG+pG GKt +a+ l+  
  MMETSP0890-20130614|7018_1 210 IRRLIQILARrKKNNPILVGAPGVGKTAIAEGLAIR 245
                 4667777655145678**************998754 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.76
  PF01078.16  33 sGKtmlakrlpsllpplsee..ealevakiasvag.kkeeekllkrrpfraphhsaskaalvGgg 94 
                 sG+    +rl++++++++++   +l + +i+s+ g  ++ +++l+ + + +p  +  ++ ++G+ 
  MMETSP0890-20130614|7018_1 273 SGRGAFEARLKAVIAEIEQNphAILFIDEIHSLIGaGSQGNQALDAANLLKPALAKGTMRVIGAT 337
                 45556788888888888764226778888999888445556667777777777777777777765 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.016
  PF01078.16  17 iaaaGgHnlllvGppGsGKtmlakrlp 43 
                  +a  +  ++l+Gp G GKt  ak+l+
  MMETSP0890-20130614|7018_1 643 SSARPRGTFMLLGPTGVGKTETAKALA 669
                 5555666799*************9986 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 1.8
  PF01078.16 108 GvLfLDElpefkrkvleaLRePledgevtisr 139
                  v++LDE+ + +++v++++ + l++g++t ++
  MMETSP0890-20130614|7018_1 722 SVVLLDEAEKAHHDVFNTFLQVLDEGRLTDAK 753
                 6899**************99999999987555 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0052       2.6       3      26 ..     227     250 ..     226     264 .. 0.84
   2 !    7.4   0.0    0.0087       4.4       2      22 ..     652     672 ..     651     689 .. 0.88
   3 ?   -2.0   0.0       7.1   3.6e+03      92     107 .]     755     770 ..     749     770 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0052
  PF00910.17   3 lyGpsgeGKStlakeLakallkkl 26 
                 l+G++g+GK+ +a+ La ++l+k 
  MMETSP0890-20130614|7018_1 227 LVGAPGVGKTAIAEGLAIRILDKE 250
                 79***************9999764 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0087
  PF00910.17   2 wlyGpsgeGKStlakeLakal 22 
                 +l Gp+g+GK+ +ak La +l
  MMETSP0890-20130614|7018_1 652 MLLGPTGVGKTETAKALAFEL 672
                 689*************99777 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 7.1
  PF00910.17  92 kgtlftSkvvivtsNv 107
                 +++ ft  ++i+tsN+
  MMETSP0890-20130614|7018_1 755 HRIDFTHTYIILTSNL 770
                 5578999********5 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0018      0.92      37      60 ..     226     249 ..     206     261 .. 0.87
   2 ?    3.4   0.0     0.079        40     126     165 ..     278     316 ..     255     329 .. 0.78
   3 ?   -3.4   0.7         9   4.5e+03      86     145 ..     479     529 ..     471     566 .. 0.52
   4 !    7.2   0.0    0.0051       2.6      31      58 ..     647     673 ..     624     743 .. 0.86
   5 ?   -3.5   0.0       9.9     5e+03      88     135 ..     785     831 ..     781     836 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0018
   PF13481.1  37 llaGapgtGKStlalqlaaavatG 60 
                 +l+Gapg+GK+ +a  la++++++
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRILDK 249
                 79****************999864 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.079
   PF13481.1 126 ltadlerllaaieelegpdlvviDtlsrlvggdensnsdv 165
                 ++a l++++a+ie+ +  +++ iD + +l+g+++++n + 
  MMETSP0890-20130614|7018_1 278 FEARLKAVIAEIEQ-NPHAILFIDEIHSLIGAGSQGNQAL 316
                 566788999*****.78***************99888775 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 9
   PF13481.1  86 lr.rrlsailaal..ddpenlllvslagvgslrltaddrrdalltadlerllaaieelegpdl 145
                 lr rr++++ +++  ++++++ +  ++++           +++l ++l++l + i++  + ++
  MMETSP0890-20130614|7018_1 479 LRaRRIHELEEKYalTFQARNEARAVWQQ-----------EKVLYDELRTLNKDIQA-AEAQH 529
                 44477777776665544444444333332...........22222333344444444.22333 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0051
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaava 58 
                 prg   +l G++g+GK+  a +la  + 
  MMETSP0890-20130614|7018_1 647 PRG-TFMLLGPTGVGKTETAKALAFELF 673
                 445.58999**************98765 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 9.9
   PF13481.1  88 rrlsailaalddpenlllvslagvgslrltaddrrdalltadlerlla 135
                 +rl  il+  ++ +++ l+s+a+ +   l ++ r++++++  +++ +a
  MMETSP0890-20130614|7018_1 785 NRLDHILQY-NHLDMNALISIAKTHVAALGKMARDEHQVNLNISQAAA 831
                 677777755.46677777777777777888888888888887777665 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.089        45       3      22 ..     226     245 ..     224     270 .. 0.86
   2 ?   -0.1   0.0       1.1   5.8e+02       3      22 ..     652     671 ..     650     682 .. 0.83
   3 !    8.1   0.0    0.0034       1.7      64     123 ..     722     782 ..     711     791 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.089
   PF07726.6   3 llegvPGlaktllvkalaka 22 
                 +l g+PG++kt +++ la  
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIR 245
                 57899*********999854 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.1
   PF07726.6   3 llegvPGlaktllvkalaka 22 
                 +l g  G++kt ++kala  
  MMETSP0890-20130614|7018_1 652 MLLGPTGVGKTETAKALAFE 671
                 566788***********965 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0034
   PF07726.6  64 nllladeinrappktqsalleameerqvt.vegethklpepflvlatqnpieqeGtyplpe 123
                 +++l de  +a   +  ++l++++e ++t ++g++ ++ +++++l+ + p  q   +  pe
  MMETSP0890-20130614|7018_1 722 SVVLLDEAEKAHHDVFNTFLQVLDEGRLTdAKGHRIDFTHTYIILTSNLPYAQVSKFFRPE 782
                 689************************99457899999*******9999999888887777 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         2     1e+03      82     116 ..     143     187 ..      75     192 .. 0.55
   2 ?    6.5   0.1     0.011       5.4       3      48 ..     205     250 ..     203     323 .. 0.85
   3 ?    2.5   0.0      0.17        86      22      44 ..     650     672 ..     642     749 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2
                 H..........HHHHT....-----TS-GG.G--HHHHHHHHHH- CS
  PF01637.13  82 l..........gialpkaeleeilkkksklvflaleellealkkk 116
                 +          +  +++a+ +  +k+  ++ +l++++ +eal+++
  MMETSP0890-20130614|7018_1 143 IeksgttvdkvKLTTRQAAQIASNKQAANDPELDITDTFEALEQY 187
                 122222222113333333333333377788888999999888775 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.011
                 S-HHHHHHHHHHHHH..-SEEEEE--TT---HHHHHHHHHH-..-- CS
  PF01637.13   3 DRekELkeleeilerepnsiiviyGprrsGKTaLlkeileelkekg 48 
                  R++ +++l +il r++++  ++ G  ++GKTa+ + ++ + ++k+
  MMETSP0890-20130614|7018_1 205 GRDEVIRRLIQILARRKKNNPILVGAPGVGKTAIAEGLAIRILDKE 250
                 699999999999999999999999********99877766665555 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.17
                 EEEEE--TT---HHHHHHHHHH- CS
  PF01637.13  22 iiviyGprrsGKTaLlkeileel 44 
                   +++Gp ++GKT   k ++ el
  MMETSP0890-20130614|7018_1 650 TFMLLGPTGVGKTETAKALAFEL 672
                 56899********9888877666 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.012       6.1       3      20 ..     226     243 ..     226     256 .. 0.92
   2 ?   -2.3   0.1       6.6   3.4e+03     103     138 ..     467     503 ..     456     508 .. 0.73
   3 ?    6.1   0.0     0.017       8.6       3      29 ..     652     683 ..     651     797 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.012
   PF13671.1   3 llvGlpGsGKstlaerll 20 
                 +lvG+pG GK+  ae+l+
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLA 243
                 69************9986 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 6.6
   PF13671.1 103 ylevpeetlreRlakRerng.ddrsevpeealdrmla 138
                 +l++  e+  e+l++R+ ++ +++  ++ +a ++ +a
  MMETSP0890-20130614|7018_1 467 FLSTRAELSDEKLRARRIHElEEKYALTFQARNEARA 503
                 7888899999999999988765555666666666665 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.017
   PF13671.1   3 llvGlpGsGKstlaerllkklg.....yvrls 29 
                 +l G+ G GK+  a++l+ +l      +v+l+
  MMETSP0890-20130614|7018_1 652 MLLGPTGVGKTETAKALAFELFgddaaIVHLD 683
                 899*************9877755664444444 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0044       2.2       4      31 ..     226     253 ..     224     341 .. 0.90
   2 ?    4.6   0.0     0.039        20       3      24 ..     651     672 ..     649     695 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0044
   PF05729.7   4 ilqGeaGsGKTtLlqklasawakgklpq 31 
                 il+G++G+GKT+ + +la  + +++ p+
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRILDKEVPE 253
                 799**************98888777665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.039
   PF05729.7   3 vilqGeaGsGKTtLlqklasaw 24 
                  +l G+ G+GKT  ++ la ++
  MMETSP0890-20130614|7018_1 651 FMLLGPTGVGKTETAKALAFEL 672
                 6799*************99987 PP

>> PF13177.1  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.5   7.6e+02       4      47 ..     208     250 ..     205     259 .. 0.77
   2 ?   -2.9   0.0       8.3   4.2e+03     146     159 ..     586     599 ..     541     602 .. 0.79
   3 !   10.7   0.0   0.00055      0.28      21     128 ..     650     746 ..     634     749 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.5
   PF13177.1   4 eilkilsnaikkgrlahayLfyGeegigkkelalelakallcek 47 
                 e+++ l +++ + + +   ++ G  g+gk  +a  la ++l ++
  MMETSP0890-20130614|7018_1 208 EVIRRLIQILARRKKN-NPILVGAPGVGKTAIAEGLAIRILDKE 250
                 6777777777766554.5577899***********999998876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 8.3
   PF13177.1 146 lpTirSRcqelkfs 159
                 + Ti+SR   + ++
  MMETSP0890-20130614|7018_1 586 VATIVSRATNIPVE 599
                 46888888777665 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00055
   PF13177.1  21 ayLfyGeegigkkelalelakallcekknetacdecksckridqkkhpDvivikteekersikideireikeelskkpreskkkiiiIegaekmnkeaaNaLLKtLEE 128
                 ++++ G+ g+gk e+a++la +l+  +       + +  +  ++++    ++i+       i+ de  ++ e + ++p++    ++++++aek ++ + N +L +L E
  MMETSP0890-20130614|7018_1 650 TFMLLGPTGVGKTETAKALAFELFGDDAA---IVHLDMSEFAERHTV--SKLIGAPPG--YIGFDEGGQLTEAVRRRPYS----VVLLDEAEKAHHDVFNTFLQVLDE 746
                 56788999999999999999999997755...233333333333333..333444444..7999**9**********998....**********************88 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.052        26       5      28 ..     226     249 ..     222     273 .. 0.75
   2 !    7.8   0.0    0.0036       1.8       4      24 ..     651     671 ..     648     690 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.052
                 EEE-------TTTHHHHHHHHHHT CS
  PF00448.17   5 llvGlqGaGKTTtlaKLAallkke 28 
                 +lvG  G+GKT  +  LA ++ ++
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRILDK 249
                 79**********999999776655 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0036
                 EEEE-------TTTHHHHHHH CS
  PF00448.17   4 illvGlqGaGKTTtlaKLAal 24 
                 ++l+G++G+GKT t+  LA  
  MMETSP0890-20130614|7018_1 651 FMLLGPTGVGKTETAKALAFE 671
                 79************9988854 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.6   1.8e+03      90     151 ..     101     188 ..      40     219 .. 0.48
   2 ?    1.6   0.0      0.24   1.2e+02       5      27 ..     226     248 ..     222     267 .. 0.78
   3 ?    1.0   0.0      0.35   1.8e+02     245     266 ..     288     316 ..     265     320 .. 0.68
   4 ?   -3.3   2.2       7.2   3.7e+03     120     173 ..     485     554 ..     427     619 .. 0.49
   5 ?   13.1   0.0   7.4e-05     0.037       3      95 ..     650     765 ..     648     889 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.6
   PF12846.2  90 dllla.lle..tdselrnrpledeeeaalsralrelyeeegia.....................tlaqrqayPt..lgdllealreee 151
                 +++l+ +++  +d+ +++ + +  + a l  al + y+ + i+                     +++q+ + P+  ++d  eal++ +
  MMETSP0890-20130614|7018_1 101 QEVLQrVFQekKDYGDGSADGGMGTIAHLLCALTTDYQIKKIIeksgttvdkvklttrqaaqiaSNKQAANDPEldITDTFEALEQYS 188
                 3333334443333333333333333333333333333333333555555666655555555556666666666335666666666666 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.24
   PF12846.2   5 lilGppGsGKSvllkklvlqlla 27 
                 +++G pG GK+  +  l+ + l 
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRILD 248
                 799*********99999887766 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.35
   PF12846.2 245 d......kllviDEahrllgs.pegadfl 266
                 +       +l+iDE h l+g+ ++g ++l
  MMETSP0890-20130614|7018_1 288 EieqnphAILFIDEIHSLIGAgSQGNQAL 316
                 044444489**********9966665554 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 7.2
   PF12846.2 120 relyeeegia......tlaqrqayPtlgdllealreeeeelaeealarde............rreaaeelal 173
                 +el e+++ +      ++a++q+ ++l d l+ l+++++  +++  a               r ++++el++
  MMETSP0890-20130614|7018_1 485 HELEEKYALTfqarneARAVWQQEKVLYDELRTLNKDIQAAEAQHAA--LqrmnrfgdaaalRNSELAELRQ 554
                 33333333334444444666666666666555555555111111111..11233333333332222222222 PP

  == domain 5    score: 13.1 bits;  conditional E-value: 7.4e-05
   PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvviiDp..ggeys...glaralg..gqvidlgegkgis....................lNPfdigpteagaekleaeadphsreldllla..l 95 
                 ++++lGp+G GK+ ++k+l+++l   ++ +v +D+      +   +  +++g    +i ++eg+  +                     + f +++++ ++ +l+   d++++++d+  +  +
  MMETSP0890-20130614|7018_1 650 TFMLLGPTGVGKTETAKALAFELFGDDAAIVHLDMseF---AerhTVSKLIGapPGYIGFDEGGQLTeavrrrpysvvlldeaekahHDVFNTFLQVLDEGRLT---DAKGHRIDFTHTyiI 765
                 799**********************9999999999433...335477777764348888888888877777666556666666666644444444444444444...666666666666422 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         3   1.5e+03     119     153 ..      73     112 ..      21     191 .. 0.59
   2 ?   -0.8   0.3         2     1e+03     119     188 ..     507     570 ..     478     623 .. 0.60
   3 ?   12.8   0.0   0.00013     0.067      28      60 ..     653     684 ..     650     691 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3
  PF01935.12 119 qrsvleealeqaka.....keekeklssdepveklleelk 153
                 + ++l++a++++k      +e   + s++e ++++++e k
  MMETSP0890-20130614|7018_1  73 LNQLLRQAVRELKPskeivEEVRLSRSTQEVLQRVFQEKK 112
                 4455555555555543333333333333333333333333 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2
  PF01935.12 119 qrsvleealeqakakeekeklssdepveklleelkkekeelrklknqairrlldklerllrkggsfsnss 188
                 q++v   ++++++  +++++++++e     l+ ++ +  ++  l+n+ +++l +++ ++++k + +++++
  MMETSP0890-20130614|7018_1 507 QEKV---LYDELR--TLNKDIQAAEAQHAALQRMN-RFGDAAALRNSELAELRQRRVEMIQKAEARQTTQ 570
                 3333...334444..66666666666666666666.3336666666666666666666666666553333 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00013
  PF01935.12  28 ilgsTGsGKSntvavLleellekkgatililDp 60 
                  lg TG+GK+ t++ L  el   ++a i+ lD+
  MMETSP0890-20130614|7018_1 653 LLGPTGVGKTETAKALAFELF-GDDAAIVHLDM 684
                 69*******************.99*****9998 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0011      0.55       3      34 ..     226     258 ..     224     301 .. 0.74
   2 ?   -2.6   0.4       8.3   4.2e+03      29      29 ..     526     526 ..     474     577 .. 0.57
   3 ?    6.1   0.1     0.017       8.5       2      20 ..     651     669 ..     650     700 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0011
   PF13521.1   3 vitGgpstGKTtlleaLaar.gypvvpEvarev 34 
                 +++G+p++GKT ++e La r   + vpE  r++
  MMETSP0890-20130614|7018_1 226 ILVGAPGVGKTAIAEGLAIRiLDKEVPESLRKI 258
                 689***************774444667777766 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 8.3
   PF13521.1  29 E 29 
                 E
  MMETSP0890-20130614|7018_1 526 E 526
                 1 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.017
   PF13521.1   2 ivitGgpstGKTtlleaLa 20 
                 ++++G+ ++GKT +++aLa
  MMETSP0890-20130614|7018_1 651 FMLLGPTGVGKTETAKALA 669
                 6799**************9 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.3      0.81   4.1e+02      72     142 ..     101     193 ..      65     291 .. 0.61
   2 ?    2.9   1.3       0.2     1e+02     116     199 ..     436     527 ..     332     567 .. 0.71
   3 ?   10.1   0.0    0.0013      0.67      19      47 ..     648     676 ..     646     769 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.81
   PF13476.1  72 kayvelsfeddkgrek...................tylieeerektkkkgkkvkkeilellei...deleqfleellksdkeilpliaylgqe 142
                  ++ ++ f+++k+  +                    y i++ +ek+ ++ +kvk ++++  +i   ++  ++ e  +++++e l++++++  +
  MMETSP0890-20130614|7018_1 101 QEVLQRVFQEKKDYGDgsadggmgtiahllcalttDYQIKKIIEKSGTTVDKVKLTTRQAAQIasnKQAANDPELDITDTFEALEQYSIDLIG 193
                 444444454444433366677777777777777775666665666666666666666665555222444444444677777766554433222 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.2
   PF13476.1 116 deleqfleellksdkeilpliaylgqerekekfkl.....kekkk......rleelekeleeledekellekl.lqeeekekeleeleeeleelle 199
                 d le +++el+++ ++  +   ++ ++  ++ f+      +   +      r++ele+++    + +++ ++  +qe+ + +el +l+++++ ++ 
  MMETSP0890-20130614|7018_1 436 DSLERKVNELSGELESLRNEQNLQSSGF-FASFLStraelS---DeklrarRIHELEEKYALTFQARNEARAVwQQEKVLYDELRTLNKDIQAAEA 527
                 4444444444444433333333333333.222222221111...1222333666666666666666665555444555577788888888887765 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0013
   PF13476.1  19 kgltlItGpNGsGKTTildAiclaLygkt 47 
                 +g + + Gp+G GKT   +A+ + L+g+ 
  MMETSP0890-20130614|7018_1 648 RGTFMLLGPTGVGKTETAKALAFELFGDD 676
                 588999********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       860  (0.0629023); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.63u 0.31s 00:00:01.94 Elapsed: 00:00:01.43
# Mc/sec: 1565.17
//
Query:       MMETSP0890-20130614|7029_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.096   12.4   0.0       0.15   11.8   0.0    1.2  1  PF06328.6 Ig-like C2-type domain


Domain annotation for each model (and alignments):
>> PF06328.6  Ig-like C2-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05      0.15      17      69 ..      17      68 ..      16      74 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.1e-05
                TTS-B--EEE--CCCCCT--TTT-EEESSSSBS-CCC-EE-STTEEE--BSS- CS
   PF06328.6 17 lgsnvtasCilkqkclhsvsakkIlwklnlakiPeeqyrrvndttSsvtfvnl 69
                +g+++  sC l++    s +a +Il ++  a   +++  ++  +tS+++f  l
  MMETSP0890-20130614|7029_1 17 IGDAFEKSCELNKPSA-SADARRILVQMVRAYTDGSKGGVILHNTSKNFFLAL 68
                599*********8888.9******************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 536.50
//
Query:       MMETSP0890-20130614|7027_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-23   81.6   0.0    8.3e-23   81.0   0.0    1.3  1  PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
    4.1e-15   55.7   0.0    6.5e-15   55.0   0.0    1.3  1  PF04101.11 Glycosyltransferase family 28 C-terminal domain
    9.8e-09   35.3   0.0    6.1e-08   32.7   0.0    2.3  2  PF13692.1  Glycosyl transferases group 1
    1.7e-06   27.4   0.0    3.2e-06   26.5   0.0    1.4  1  PF00534.15 Glycosyl transferases group 1
    2.4e-06   26.8   0.1     0.0017   17.5   0.0    2.7  3  PF13528.1  Glycosyl transferase family 1


Domain annotation for each model (and alignments):
>> PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0     3e-26   8.3e-23       1     168 [.      12     182 ..      12     183 .. 0.90

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 3e-26
   PF06925.6   1 HnqaaealkealkaefgdeyqvvvkdllkelnpfllkavlksYlflvkvsalyrllyygteekiqkksilaklatflak.ela.alleeeqPDiiisthplvaelplsvL.kskellk.rvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGidksnikvtGiP 168
                 H+++a+al +al++ +  e ++ + d++++   ++l+ ++ +Y +l +   l+r l ygt+  +    ++     +  + +++ alle+   D ++s+hpl +++pls+L   + ++k ++++vtvvtD+   h++W+    dr +v++k v++ a  +G++k+ni   G+P
  MMETSP0890-20130614|7027_1  12 HRASAQALAQALERLYPGEFEIDIYDIWTAVGRWPLNHFVACYSYLGRRPWLWRGLWYGTA-VWATRVPIRTWHDVQHRwRFKrALLERGDVDCVVSVHPLCQHVPLSSLaLVRAEQKrPIPFVTVVTDLGSAHPMWFDARADRVFVPNKRVARLAEFHGVPKKNIIEHGLP 182
                 99********************************************************988.88888888777777766766526788999*****************9985555555157789***********************************************9 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   2.4e-18   6.5e-15       2      97 ..     273     375 ..     272     391 .. 0.92

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 2.4e-18
                 EEEE---SSHHHHHCCCTSHHHHHHHCHHHHCHHHC----EC---STT.......-----EEEE-EESSSSHHHHHHHH-EEEEE-----HHHHHHTT--EEE CS
  PF04101.11   2 ifVtgGSqgaealnqlvleilkllelksreeqvlhqtGksnyeevkik.......veklglkvevfsysdkmaeiikaadlvIsrAGagtiaellalgkplIl 97 
                 ++++gG  g+  l q vl  ++ l+++ +  ++++ +G + +   + +       ++++++++ ++ ++++m + ++ ad+  + AG+gtiae++alg+p+Il
  MMETSP0890-20130614|7027_1 273 VLIVGGGDGFGGLRQIVLATAEALKKRDKPANLVVVCGRNADLRNQLDillhseaWKNTKITINILGFVTDMHAHMARADILLTKAGPGTIAEAAALGLPVIL 375
                 89**************************************88777777778777788888******************************************8 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.59   1.6e+03     120     133 ..      14      27 ..       6      28 .. 0.83
   2 !   32.7   0.0   2.2e-11   6.1e-08       6     112 ..     277     383 ..     271     429 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.59
   PF13692.1 120 ddpeelaealvrll 133
                  ++++la+al+rl+
  MMETSP0890-20130614|7027_1  14 ASAQALAQALERLY 27 
                 5899********97 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.2e-11
   PF13692.1   6 gssgsltndkdleelleealprlreklpdvelvi.iGkgpd.....e..larl..lep..nveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeee 112
                 g+ +++    +l++++ +  ++l+++ + ++lv+ +G+++d     +  l+ +  ++    + +lgfv ++ +++a+ad++l   +  +g p+ + e++a GlPv+ +++    lp +e
  MMETSP0890-20130614|7027_1 277 GGGDGF---GGLRQIVLATAEALKKRDKPANLVVvCGRNADlrnqlDilLHSEawKNTkiTINILGFVTDMHAHMARADILLT--K--AG-PGTIAEAAALGLPVILTNY----LPGQE 383
                 444433...4777777777889999998899888367777766644233333365333457778******************7..4..33.899***************8....33333 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.2e-09   3.2e-06      36     126 ..     292     381 ..     284     425 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.2e-09
                 HHHCSTT..GGGEEEEE--.--B-HHHHHHHHHH...---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-.TTB CS
  PF00534.15  36 afallkeqenpnlklvivG.dgeeekelkklaee...lelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasn.vgg 126
                  ++ lk++ +p   +v++G + + +++l  l +    ++ + ++ ++g+v   d+++++ +adi++ +    + + ++ EA a+glpvi +n  +g
  MMETSP0890-20130614|7027_1 292 TAEALKKRDKPANLVVVCGrNADLRNQLDILLHSeawKNTKITINILGFVT--DMHAHMARADILLTK----AGPGTIAEAAALGLPVILTNyLPG 381
                 566788889**********86666666665555511134444555555555..***************....********************5555 PP

>> PF13528.1  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0017       4.5       4      26 ..       2      25 ..       1      37 [. 0.78
   2 ?   -1.4   0.0      0.35   9.5e+02      77     124 ..      84     140 ..      75     170 .. 0.73
   3 !   17.5   0.0   6.2e-07    0.0017     238     276 ..     339     376 ..     292     392 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0017
   PF13528.1  4 lygvqgtGnGHisRaralaeaL.r 26
                l+ ++ tG GH++ a+ala+aL r
  MMETSP0890-20130614|7027_1  2 LILMSDTGGGHRASAQALAQALeR 25
                678899****************54 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.35
   PF13528.1  77 aklkrlvrklvklldasepDlvItDfepi.........sllaaklqgvPvvgidhqy 124
                  +   ++r  + ll++  +D v++ ++           +++a +++ +P+v++ ++ 
  MMETSP0890-20130614|7027_1  84 HDVQHRWRFKRALLERGDVDCVVSVHPLCqhvplsslaLVRAEQKRPIPFVTVVTDL 140
                 556666777777888888999999888778888887644588899999999987665 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 6.2e-07
   PF13528.1 238 pfseegflqdLaeckavianaGfellsEalylgkpvllv 276
                 +f  +++++++a+++ + ++aG+ ++ Ea+ lg+pv+l 
  MMETSP0890-20130614|7027_1 339 GFV-TDMHAHMARADILLTKAGPGTIAEAAALGLPVILT 376
                 555.79******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.75
# Mc/sec: 1444.20
//
Query:       MMETSP0890-20130614|7031_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-18   64.8   0.0    4.7e-18   64.6   0.0    1.1  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   3.4e-22   4.7e-18       1      56 [.      27      86 ..      27      88 .. 0.94

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 3.4e-22
   PF08373.5  1 ieidGpthF..yrnsgvll..gktklKrriLtalGwkvisipyfeWnelqgkeekldYlk 56
                +e+dGp+h+  +++ ++++  g tklK r+L++lGw ++++pyfeW  l +   +  Yl+
  MMETSP0890-20130614|7031_1 27 VEVDGPSHYlkCMRRRQPRenGRTKLKSRLLRKLGWTLVHVPYFEWDLLTDVPAQDSYLR 86
                69*******998888888889****************************99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 363.45
//
Query:       MMETSP0890-20130614|7030_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   37.8   1.4      3e-09   36.3   0.0    2.4  2  PF00226.26 DnaJ domain
     0.0016   18.3   3.7      0.012   15.5   1.4    2.4  2  PF13273.1  Protein of unknown function (DUF4064)
  ------ inclusion threshold ------
      0.064   12.6   0.8       0.15   11.3   0.0    2.3  2  PF12685.2  SpoIIIAH-like protein
      0.094   11.7   2.3       0.21   10.5   0.3    2.0  2  PF07760.6  Protein of unknown function (DUF1616)
       0.11   11.8   2.4       0.22   10.9   0.1    2.2  2  PF07895.6  Protein of unknown function (DUF1673)
       0.21   10.7   5.0       0.23   10.7   0.2    3.0  3  PF07423.6  Protein of unknown function (DUF1510)
        2.5    7.6   6.3         30    4.0   1.3    3.5  3  PF11807.3  Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.5e-12     3e-09       7      60 ..       2      50 ..       2      53 .. 0.90
   2 ?   -1.9   0.2       1.3   2.6e+03      24      46 ..      58      78 ..      56      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.5e-12
                T--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHH CS
  PF00226.26  7 gvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekr 60
                g++++as e+Ikk+Y++++l +HPDk  + +    e+ ++i  A+evL  +e+ 
  MMETSP0890-20130614|7030_1  2 GLQQSASFEDIKKKYHEKMLVHHPDK-GGRN----EDCQKIIHAFEVLVEEERV 50
                78999*********************.5555....8************998875 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.3
                HHHHT-TTT--SCCHHHHHHHHH CS
  PF00226.26 24 lalkyHPDknkddeeeaeekfke 46
                  l++H D  k++e   +++++ 
  MMETSP0890-20130614|7030_1 58 QQLQLHQDERKHKE--DQQRMET 78
                67999999988888..6777665 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.4   6.3e-06     0.012       7      70 ..     164     229 ..     160     235 .. 0.71
   2 ?    1.5   0.0      0.14   2.8e+02       6      37 ..     361     398 ..     346     430 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.3e-06
   PF13273.1   7 vLgliGgilgilagllalvigil...gsselkkeeqeeaeeleeetildllstlvlilgvlaiilsi 70 
                  L l+G il il+++l +++++l   + s+ +k+++ e+++  +e+ ++ + + +li+++++iil++
  MMETSP0890-20130614|7030_1 164 LLILVGTILLILIAFLTAYFAGLtlfS-SQCRKSTEPEKSKIISEEPTSSTRENILIYVLIIIILCV 229
                 699****************99884423.466666655555555777777777777777777777766 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.14
   PF13273.1   6 fvLgliGgilgilagllalvigil...gs...selkke 37 
                 f L ++G +l  + +++a +++ l    +   + ++k+
  MMETSP0890-20130614|7030_1 361 FTLFIVGRVLRYITSSFASLVTALflrVTalfQRVEKK 398
                 66788888888887777777665534311223333333 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.4   2.7e+03      61      61 ..      80      80 ..      49     152 .. 0.54
   2 ?   11.3   0.0   7.8e-05      0.15       3      74 ..     216     303 ..     166     441 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.4
   PF12685.2 61 e 61
                e
  MMETSP0890-20130614|7030_1 80 E 80
                1 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.8e-05
   PF12685.2   3 qiiitlLalmivlagylnyalnkdkdnkasvaaesseassaeeseaenkaasaedqa.e.e..........................eaasednpgeavl 74 
                 +i+i +L+++i ++++   +  kd+d+ + + +++++a+s ++ + ++ a+++ +++   +                          e    d     ++
  MMETSP0890-20130614|7030_1 216 NILIYVLIIIILCVAW---SIAKDQDQPSLNRKKKYSAKSSTPDPVDKSATTSSKKDsDsPtghpnskinlllhkyillgfythtesE----D-----SN 303
                 5677777777777666...777777777777777777777777777777766665553323566666666666666666666643220....2.....11 PP

>> PF07760.6  Protein of unknown function (DUF1616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00011      0.21      88     157 ..     165     235 ..     159     245 .. 0.76
   2 ?    0.3   0.0      0.14   2.7e+02      49      95 ..     341     386 ..     324     419 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   PF07760.6  88 pillslslftllllliailrrrklpneerfsvlfealdsq..gkylpnsksdkvllvllivsilalvglvgy 157
                  il+  +l++l+  l a++  ++l   ++ + + e+ +s+   +++++s+ +++l ++li+ il+++ ++++
  MMETSP0890-20130614|7030_1 165 LILVGTILLILIAFLTAYFAGLTLF-SSQCRKSTEPEKSKiiSEEPTSSTRENILIYVLIIIILCVAWSIAK 235
                 5777777888888888888888855.456666666666669899999**************88888778775 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.14
   PF07760.6  49 kkdsldgierlalsvglSiavvpl.iGlllnytpwgirllpillslsl 95 
                 k+d  + ++++++s+++ i ++ + +G +l y+ +  ++++++++l+l
  MMETSP0890-20130614|7030_1 341 KRDISNKVQQIFYSFAMIIHFTLFiVGRVLRYITS--SFASLVTALFL 386
                 33444458999999999998876526999988884..44444444443 PP

>> PF07895.6  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00011      0.22      83     136 ..     164     230 ..     152     248 .. 0.64
   2 ?    0.0   0.1      0.24   4.7e+02     128     151 ..     351     371 ..     335     408 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
   PF07895.6  83 lilllglilslllvllt.............wkklmirydavakkkvirvskkkklvrlllliillli 136
                 l +l+g+il +l+  lt             +k ++ ++ ++++ + ++   +++l+++l++iil ++
  MMETSP0890-20130614|7030_1 164 LLILVGTILLILIAFLTayfagltlfssqcRKSTEPEKSKIISEEPTSSTRENILIYVLIIIILCVA 230
                 3334444444333333334455555555578888999999999999777777777655555555544 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.24
   PF07895.6 128 llliilllillllflevilgevls 151
                 +++ ++++i ++lf+    g vl+
  MMETSP0890-20130614|7030_1 351 IFYSFAMIIHFTLFIV---GRVLR 371
                 2222222222222222...21111 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.38   7.4e+02      85      97 ..      62      74 ..      37     122 .. 0.60
   2 ?    0.4   0.0      0.16   3.1e+02      10      53 ..     158     203 ..     151     216 .. 0.41
   3 ?   10.7   0.2   0.00012      0.23      17      75 ..     216     273 ..     211     318 .. 0.55

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.38
   PF07423.6 85 ekkdeeseeeeee 97
                 ++de +++e+++
  MMETSP0890-20130614|7030_1 62 LHQDERKHKEDQQ 74
                1111111111111 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.16
   PF07423.6  10 rkanvvLniaia.iVvvlivivaaqllvgns.kskkasadeeeeek 53 
                 r ++  L i+++ i ++li++++a+       +s+  ++ e e++k
  MMETSP0890-20130614|7030_1 158 RGTTSSLLILVGtILLILIAFLTAYFAGLTLfSSQCRKSTEPEKSK 203
                 4455556666651445556555544332222022222222333333 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00012
   PF07423.6  17 niaiaiVvvlivivaaqllvgnskskkasadeeeeeksedeekteeeevkeeekeaakd 75 
                 ni+i + +++i++va+++   ++ + + +++++ + ks+  +  ++  + +++k++ + 
  MMETSP0890-20130614|7030_1 216 NILIYVLIIIILCVAWSIAKDQD-QPSLNRKKKYSAKSSTPDPVDKSATTSSKKDSDSP 273
                 89999999999999999999444.33434443333333333333333333333333333 PP

>> PF11807.3  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.16   3.1e+02      65     117 ..      21      73 ..       4      81 .. 0.69
   2 ?    4.0   1.3     0.015        30      54      54 ..     206     206 ..     153     323 .. 0.62
   3 ?   -2.0   0.0       1.1   2.2e+03      18      43 ..     376     401 ..     362     429 .. 0.56

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.16
   PF11807.3  65 gsfeapslfrgppspevdaaWddlldsgailipregvkklgkppaelevpdes 117
                  +++++   r+++ +++ +a++ l+  + ++i +++ ++l+++++e++ ++++
  MMETSP0890-20130614|7030_1  21 LVHHPDKGGRNEDCQKIIHAFEVLVEEERVRIRGNQQQQLQLHQDERKHKEDQ 73 
                 556666666777777999999999************99999999554444433 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.015
   PF11807.3  54 d 54 
                 +
  MMETSP0890-20130614|7030_1 206 S 206
                 1 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.1
   PF11807.3  18 lllllllllllllasllsssrkkaak 43 
                  + +l+  l+l +++l+++ +kk+a+
  MMETSP0890-20130614|7030_1 376 SFASLVTALFLRVTALFQRVEKKSAE 401
                 23333333334444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1386  (0.101375); expected 273.4 (0.02)
Passed bias filter:                      585  (0.0427882); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.96u 0.43s 00:00:01.39 Elapsed: 00:00:00.85
# Mc/sec: 1356.06
//
Query:       MMETSP0890-20130614|7039_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.78
# Mc/sec: 635.96
//
Query:       MMETSP0890-20130614|7037_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.5   5.6     0.0015   18.3   3.8    1.2  1  PF05558.7  DREPP plasma membrane polypeptide
     0.0015   18.0   2.6     0.0019   17.6   1.8    1.1  1  PF10232.4  Mediator of RNA polymerase II transcription complex subunit 8
      0.007   15.8   7.4     0.0076   15.7   5.1    1.1  1  PF09184.6  PPP4R2
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.048   13.7   0.0    1.7  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
      0.028   14.1   1.5      0.047   13.4   0.1    1.9  2  PF13180.1  PDZ domain
      0.037   13.6   6.2      0.054   13.1   4.3    1.1  1  PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
       0.31   10.3   8.9       0.38   10.0   6.1    1.1  1  PF14153.1  Spore coat protein CotO
       0.65    9.2   3.1       0.81    8.9   2.2    1.1  1  PF03839.11 Translocation protein Sec62
       0.73    8.6   5.8       0.95    8.2   4.0    1.2  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
        3.8    7.2  14.4        5.5    6.7  10.0    1.1  1  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
        4.3    6.3  12.8        5.4    6.0   8.9    1.0  1  PF09507.5  DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> PF05558.7  DREPP plasma membrane polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.8   1.2e-06    0.0015     128     195 ..     103     141 ..      38     154 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.2e-06
   PF05558.7 128 tfiveEekkeeeaaaaaeeekkeeaaavkekeivvEekkkeeeaapaeeaapstkvaeekkeeeeaea 195
                  ++ eE+kk+e a aa+ee++ +e a v+e e                             eeee+e+
  MMETSP0890-20130614|7037_1 103 GMVEEENKKKEDAVAAVEEDESKEHAIVEEEE-----------------------------EEEEEEE 141
                 23334555555555555554444444444433.............................3333333 PP

>> PF10232.4  Mediator of RNA polymerase II transcription complex subunit 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.8   1.5e-06    0.0019      83     183 ..      57     158 ..      52     166 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.5e-06
   PF10232.4  83 ptrdeeelvtdlLRtKpdPeveewmkqarqkaenstedkaakqeeeiailqqdkevsnvldvvtklre.elefeseeaveneetleeedtellvaavksgkg 183
                   + +++++ ++LR + +P  e+  + ++ +++++  d  + ++++  + +++k  +  +++v +    e  +++ee+ e+ee+       llv+ +++g++
  MMETSP0890-20130614|7037_1  57 IRKGKTPVLITFLRPRSIPCNEQNDSTNQGNGQQAVVDSVKEKDKDGMVEEENKKKEDAVAAVEEDESkEHAIVEEEEEEEEEEERCTFSLLLVVTSAPGRF 158
                 5667889************************************99999999999999998888773222333333333333333333333455666666655 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   5.1   6.1e-06    0.0076     209     285 ..      73     141 ..      34     144 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.1e-06
   PF09184.6 209 espdssqdkekkleeyyekesseaaadeddeakdsdvknkkaddeedddedsdyieekelkedeeedeteeeeeeed 285
                 + p ++q++++++     + ++  +++ +++ kd+ v+++++++e++     + +ee+e+ke +  +e+eeeeeee+
  MMETSP0890-20130614|7037_1  73 SIPCNEQNDSTNQG----NGQQAVVDSVKEKDKDGMVEEENKKKEDA----VAAVEEDESKEHAIVEEEEEEEEEEE 141
                 55566666666662....33345566666777789999999888888....33455666666655444444444443 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.9e-05     0.048      36      72 ..      24      61 ..      16      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.9e-05
                HHTTTTSBSTTCEEEEETTEBGTTS.HHHHHHHHHHTH CS
  PF00595.19 36 gaaeagglkeGDkIlsvNgvdvenv.shdeavqaikgk 72
                g a++ g+k+GD + +vNgv+v+++  ++++v + kgk
  MMETSP0890-20130614|7037_1 24 GQADRLGVKVGDAVSKVNGVSVAGLdFKETIVTIRKGK 61
                6677888****************994445555544444 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.8e-05     0.047      26      71 ..      25      70 ..      19      83 .. 0.85
   2 ?   -0.8   0.1         1   1.3e+03      23      43 ..     101     121 ..      81     133 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.8e-05
   PF13180.1 26 PaakaglkpGDiilkvdgkkvksltdlkslllkkkpGdt.vkltvlR 71
                 a++ g+k+GD + kv+g+ v  + d+k+ + + ++G+t v +t+lR
  MMETSP0890-20130614|7037_1 25 QADRLGVKVGDAVSKVNGVSV-AGLDFKETIVTIRKGKTpVLITFLR 70
                678889***************.8889999999777776548888888 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1
   PF13180.1  23 essPaakaglkpGDiilkvdg 43 
                 +++  ++++ k+ D + +v++
  MMETSP0890-20130614|7037_1 101 KDGMVEEENKKKEDAVAAVEE 121
                 233334444455666666655 PP

>> PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.3   4.4e-05     0.054      67     142 ..      68     139 ..      61     143 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-05
   PF03986.8  67 fLvtrnvpcyrRakqveaeeeeeeiveeeee..ddgwvkthkkekekekeeeeeedikeikdeeeeeaaeeeeeeeed 142
                 fL  r++pc++   ++++++ ++++v++ +e   dg v+ ++k+ke++  + ee++ ke    eee      eeeee+
  MMETSP0890-20130614|7037_1  68 FLRPRSIPCNEQNDSTNQGNGQQAVVDSVKEkdKDGMVEEENKKKEDAVAAVEEDESKEHAIVEEE------EEEEEE 139
                 8999************99989998888766644688888777666555433333333333332222......222222 PP

>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.1    0.0003      0.38      40      98 ..      83     141 ..      52     146 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0003
   PF14153.1  40 eeekensnekkkekeeeqkeekaeveseeeaeeaesedeqesseqeeiaqeveeeeeee 98 
                  ++ + +++ +++ +e+ k   +e+e+++++++++  +e es+e++ +++e+eeeeeee
  MMETSP0890-20130614|7037_1  83 TNQGNGQQAVVDSVKEKDKDGMVEEENKKKEDAVAAVEEDESKEHAIVEEEEEEEEEEE 141
                 33344444445555555555555555555555555444444444444444444444333 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.2   0.00065      0.81      16      84 ..      77     145 ..      66     154 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00065
  PF03839.11  16 ledekykkekdkkkaeiaetkkskkeeskekkkekakeekkdteaeevdkelkkeekkeekkkkkkkkv 84 
                  e+++ +++ + ++a +  +k+ +k+ + e++++k  +   + e  e+++++  ee++ee++++++  +
  MMETSP0890-20130614|7037_1  77 NEQNDSTNQGNGQQAVVDSVKEKDKDGMVEEENKKKEDAVAAVEEDESKEHAIVEEEEEEEEEEERCTF 145
                 444455455555555555666666776677766666666665555555555444444444444434455 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.0   0.00077      0.95      31      74 ..      95     138 ..      65     154 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00077
  PF03896.11  31 saqdltedeeaeddvvdedeedeaeveedekte.aeeeedeeeag 74 
                 s +++ +d  +e+++ +++ +  a veede++e a +ee+eee++
  MMETSP0890-20130614|7037_1  95 SVKEKDKDGMVEEENKKKE-DAVAAVEEDESKEhAIVEEEEEEEE 138
                 2233333333333333333.3334455555555454444444221 PP

>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.0    0.0044       5.5     141     196 ..      83     141 ..      73     143 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0044
   PF11705.3 141 lskfkkkadlkkfae.edeeeklsalekkekeldaedeeeedkkee....eeeeeeeeedd 196
                 +++ + ++++   ++ +d++   ++++kk+++  a    eed+++e    eeeeeeeee++
  MMETSP0890-20130614|7037_1  83 TNQGNGQQAVVDSVKeKDKDGMVEEENKKKED--AVAAVEEDESKEhaivEEEEEEEEEEE 141
                 44555555555444415655555555544444..444444444444458755555555543 PP

>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.9    0.0043       5.4     280     332 ..      90     141 ..      70     146 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0043
   PF09507.5 280 k.rqkrlessdseeeteekekekrkrlkkmmedededeemeivpespqeeeese 332
                 +  +++++++d++   ee++k+k++ + +++ede+++   +iv+e  +eeee+e
  MMETSP0890-20130614|7037_1  90 QaVVDSVKEKDKDGMVEEENKKKEDAVAAVEEDESKEH--AIVEEEEEEEEEEE 141
                 23567788888899999999999999999999999999..88888885555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1507  (0.110225); expected 273.4 (0.02)
Passed bias filter:                      899  (0.0657548); expected 273.4 (0.02)
Passed Vit filter:                       140  (0.0102399); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.47s 00:00:01.04 Elapsed: 00:00:00.65
# Mc/sec: 619.37
//
Query:       MMETSP0890-20130614|7040_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1508  (0.110298); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:00.78
# Mc/sec: 712.76
//
Query:       MMETSP0890-20130614|7041_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-09   37.3   0.3    4.1e-07   30.2   0.1    2.6  2  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1     3e-11   4.1e-07       1     164 []       6     120 ..       6     120 .. 0.84
   2 ?   -2.6   0.0      0.36   4.9e+03      42      53 ..     135     146 ..     127     190 .. 0.54

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 3e-11
                 ----EESS-B----EEEEECCCEEECCCCHH...............----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCG.GGTEE-SS.SEEEEEEES..TTSSEEEEEESS-B-TT-B-EE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaekaddagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpva.rflNHSCdpNltvqfvfv..trgprvalrAtrdIpkGeEltidYg 164
                 GrG +A++ ipkG+ + eyvge +  +e  ++                +ak+s                                    s++   p+++   +++ + + +++a+   ++   ++NH  d+ ++v    +  ++   + ++A +dI +G El +dYg
  MMETSP0890-20130614|7041_1   6 GRGCYASQKIPKGTYLGEYVGEEIDREEFFRR----------------YAKSS------------------------------------SSNELPPRYVLRVDSDLYIDAERYATSVNNFTpALMNHADDGDVNVVRYCAqrRNPALIHFFAKKDIYPGSELVFDYG 120
                 9******************************2................34444....................................44455566667777777778888888888887589*******999999999977777899*****************9 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.36
                 .....----TTC CS
                 xxxxxxxxxxxx RF
  PF00856.23  42 kkelaadeakks 53 
                  +  +++++k  
  MMETSP0890-20130614|7041_1 135 SNKATNERNKVD 146
                 333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:01.47
# Mc/sec: 394.50
//
Query:       MMETSP0890-20130614|7046_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.009   14.6  20.2      0.036   12.7  14.0    1.7  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.033   14.1   2.3      0.043   13.7   1.2    1.5  1  PF14340.1  Domain of unknown function (DUF4395)
        0.2   10.2   1.9       0.23    9.9   1.3    1.1  1  PF03092.11 BT1 family


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7  14.0   7.9e-06     0.036      43     167 ..      15     151 ..       6     169 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.9e-06
  PF07690.11  43 lgyaiasllaGrlsdrfGrrrvlllglllfalg..lllll.fa.......sslwalllvlrvlqGlgagalfpagaaliadwfpke..ergral.gllsagfslGailgpllggllasslgWravFlilailsllaav 167
                 lg +++s++aG ++dr+ +  ++ +++ ++ ++  +l++l +a        +   ll+ + ++ ++  g+l  a+a  iad+ + e  + + a+ g+++++ s+Gai+  +  ++l++ +gW+a+F+ la+l+ la +
  MMETSP0890-20130614|7046_1  15 LGGVLGSVVAGLVADRLFHGAMISTCAPFAMATsvSLIILaLAydkgpsfKNAL-LLFSAGFFVAAPDGVLGGAAAKNIADYNANEdpKLPAAVsGFINGCGSIGAIVQGIGTAALVDTAGWSALFFCLAALMGLASI 151
                 6889************53444333333333333122333334356664544444.6888889999999*************99885345555555999***********99999***************999999977 PP

>> PF14340.1  Domain of unknown function (DUF4395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.2   9.4e-06     0.043       9     111 ..      44     146 ..      32     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.4e-06
   PF14340.1   9 naglvvvllllalllsqpwllallavvfalrvlagprlsplgllfrrllaprlapkpeledaapkrFAqliGlvfavvalvlfllglevlglvaaalllvaaf 111
                 + ++ v l++lal++++   +   ++ f ++++++    +lg  +++ +a  +a +    +aa   F +++G + a+v  ++ ++ ++++g+ a++++l+a +
  MMETSP0890-20130614|7046_1  44 AMATSVSLIILALAYDKGPSFKNALLLFSAGFFVAAPDGVLGGAAAKNIADYNANEDPKLPAAVSGFINGCGSIGAIVQGIGTAALVDTAGWSALFFCLAALM 146
                 5566677788888888777666666777777777555557777778888888889999999999***********************************9975 PP

>> PF03092.11  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3   5.1e-05      0.23      26     170 ..       5     152 ..       1     170 [. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.1e-05
  PF03092.11  26 ryqrlsglatlgwvikali.allsDgfallG...ytkrwYlalscllgaifallygllpakeasakvaaafiflsslgkalvdvlsdglyselarqepkagpslvSliWlvilvGgiiasvlsGpLldagktrisvlvsaalqlltlvd 170
                 +++r+s l  lg v+  ++ +l++D   + G   +t+ ++ +   +   i al+y   p+ ++ + + +a  f+++    l + +++ +    a + pk  ++   +i ++ ++G+i+  +   +L+d+      ++ +aal  l  + 
  MMETSP0890-20130614|7046_1   5 NAARISALLDLGGVLGSVVaGLVADR-LFHGamiSTCAPFAMATSVSLIILALAYDKGPSFKNALLLFSAGFFVAAPDGVLGGAAAKNIADYNANEDPKLPAAVSGFINGCGSIGAIVQGIGTAALVDTAGWSALFFCLAALMGLASIT 152
                 56777777788777766541566665.3455333688999888888888888888888887777777777777777777777777777777788888888777888999999999999999999*****************99988664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.95
# Mc/sec: 446.48
//
Query:       MMETSP0890-20130614|7050_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       113  (0.00826507); expected 273.4 (0.02)
Passed bias filter:                      113  (0.00826507); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.33s 00:00:00.65 Elapsed: 00:00:00.88
# Mc/sec: 166.11
//
Query:       MMETSP0890-20130614|7049_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 1067.79
//
Query:       MMETSP0890-20130614|7044_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:01.19
# Mc/sec: 271.86
//
Query:       MMETSP0890-20130614|7052_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.2   0.1    2.2e-15   56.2   0.1    1.5  1  PF04564.10 U-box domain
    4.5e-07   29.2   0.0    9.7e-07   28.1   0.0    1.5  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
      0.034   13.5   0.0      0.074   12.4   0.0    1.5  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.13   11.3   0.0        0.2   10.7   0.0    1.2  1  PF04641.7  Replication termination factor 2


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   6.5e-19   2.2e-15       5      70 ..      26      92 ..      24      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 6.5e-19
                GB-TTT-SB-SSEEE-TTT.-EEEHHHHHHHHTT.SSB-TTT-SB--GG.GSEE-HHHHHHHHHHHHH CS
  PF04564.10  5 fldpitlelmkdPvilPsg.itvDrstiekhllsrdktdPftrepltee.elipnlelKekIdkflee 70
                f++pi+ ++m dPv+l++   t++r++ie +l + ++ dP t e+ltee  l+pn++l  +I ++ e+
  MMETSP0890-20130614|7052_1 26 FICPIMKTIMLDPVVLSETgNTFERNAIEMWLSE-SNLDPQTSETLTEEpTLVPNRSLARQIRNWCED 92
                9****************877**************.*******9999877479*************986 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.8e-10   9.7e-07       8      46 ..      23      59 ..      16      70 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.8e-10
                XXX-B-TTT-S.-SS....EEEES.---EEEHHHHHHHHHH CS
   PF13445.1  8 hsifaCpiske.qsteqnpPvvLp.CGhvisrealeklakg 46
                ++ f+Cpi k  + +    PvvL   G++++r+a+e ++++
  MMETSP0890-20130614|7052_1 23 QPLFICPIMKTiMLD----PVVLSeTGNTFERNAIEMWLSE 59
                778**********99....*******************983 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.2e-05     0.074      13      46 ..      27      60 ..      20      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
                B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT CS
   PF11789.3 13 kCpltlkpfkePvtskkCnHvFEkeaIlkmlkrk 46
                 Cp+ +  + +Pv   +   +FE++aI+  l+++
  MMETSP0890-20130614|7052_1 27 ICPIMKTIMLDPVVLSETGNTFERNAIEMWLSES 60
                5***************************999554 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.7e-05       0.2      21      72 ..      12      63 ..       6      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.7e-05
   PF04641.7 21 kekvdkeeekearwklCaLskepLekPivadrlGkLYnkdavleaLldkske 72
                +++++ ++++++  ++C++ k  + +P+v+ + G+ +  +a+  +L + + +
  MMETSP0890-20130614|7052_1 12 HNELEARAVDDQPLFICPIMKTIMLDPVVLSETGNTFERNAIEMWLSESNLD 63
                56679999******************************99987777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:01.09
# Mc/sec: 611.18
//
Query:       MMETSP0890-20130614|7054_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   12.3   0.1      0.096   11.9   0.1    1.2  1  PF06848.6 Disaggregatase related repeat
        6.9    6.6   6.1        1.1    9.1   1.1    2.0  3  PF05122.8 Mobile element transfer protein


Domain annotation for each model (and alignments):
>> PF06848.6  Disaggregatase related repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.4e-05     0.096      56     122 ..      31      96 ..      13     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
   PF06848.6  56 wyypegkareedtvievyrpasawnpeyvswnkrdkevawknaGGdwydkngvlqGstpyatitlkg 122
                 wy p g++r   +   +   a+ w + y++  ++++ + + ++G  + d  ++l Gs+p+a+++l  
  MMETSP0890-20130614|7054_1  31 WYAPYGSERLAASSWRISADADEWANIYLAIRTNEQLTRYAKPGIGYND-PDMLLGSSPHAAVSLTP 96 
                 9******************************************987655.67889*******99865 PP

>> PF05122.8  Mobile element transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.1   0.00016       1.1      29      49 ..      26      46 ..      23      49 .. 0.90
   2 ?   -3.4   0.0       1.4   9.3e+03      17      23 ..      86      92 ..      85      94 .. 0.74
   3 ?   -3.6   0.0       1.6   1.1e+04      38      44 ..      98     104 ..      96     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00016
   PF05122.8 29 CGWsadytsqsaaqLaarthr 49
                CGWsa y+   + +Laa   r
  MMETSP0890-20130614|7054_1 26 CGWSAWYAPYGSERLAASSWR 46
                ****************98877 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.4
   PF05122.8 17 qtkhaav 23
                   haav
  MMETSP0890-20130614|7054_1 86 SSPHAAV 92
                5679999 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.6
   PF05122.8  38 qsaaqLa 44 
                 qs aq+a
  MMETSP0890-20130614|7054_1  98 QSRAQFA 104
                 9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.55
# Mc/sec: 710.19
//
Query:       MMETSP0890-20130614|7056_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-20   72.0   0.0    4.9e-20   71.3   0.0    1.3  1  PF00472.15 RF-1 domain


Domain annotation for each model (and alignments):
>> PF00472.15  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   3.6e-24   4.9e-20      12      76 ..      78     142 ..      71     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 3.6e-24
  PF00472.15  12 ekdleietirssGpGGQnVNkvesaVrlthkptgivvkaqeeRsqeqNrekAlerLkallaeael 76 
                  ++++i++ r sGpGGQ+ NkvesaVr+th+ptg+v +a +eRsq +Nre+Al+rLk ++a+  +
  MMETSP0890-20130614|7056_1  78 LRQCRIDVRRDSGPGGQKRNKVESAVRITHEPTGVVANAADERSQLRNREIALKRLKFKIAHFVR 142
                 56899******************************************************998763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.57
# Mc/sec: 381.59
//
Query:       MMETSP0890-20130614|7053_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-43  146.6   0.0    8.3e-43  146.3   0.0    1.1  1  PF00557.19 Metallopeptidase family M24
  ------ inclusion threshold ------
      0.012   15.3   5.7      0.012   15.3   3.9    3.1  3  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0   1.2e-46   8.3e-43       2     204 ..     126     352 ..     125     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: 146.3 bits;  conditional E-value: 1.2e-46
                 HHHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHH.HHHTT....TTCGCS-SCCEEEECCCCE-----S-B-----EEEEEEEEEETTEEEEEEEEEE--.GHH-HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E.E--S-------.-SS-S---SS...TT---B-----EEEE--....----TTTS............-EEE-BEEEE-- CS
  PF00557.19   2 lirkAgriaaaaleavlreikpgvterelaalieaa.lkreg....akgqafppivasgenaallhytpndrvlkdgdlvlldvgaeydgyasditrTvvvg.ftpeqrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlseffphglGHgvglevhdepsvsr...kgrgrkleegmvftieP....giyfapge............ggvriedtvlvt 204
                  irkA++i +++l+a  +++k gvt++e++++  +a l+r+      ++  fp+ v++++n++++h++p+ r+l++gd+v++dv + ++g+++d+  T++vg  +p+  +++e++ + ++ a +++kpG+ +++i++a+ek+ ++++ s ++  ++GHg+g  +h  p+v++   ++ + ++++g++ftieP    g++ ++ +             ++++e+t+lvt
  MMETSP0890-20130614|7053_1 126 GIRKACQIGREVLDACGNAVKAGVTTAEIDRICYEAcLERNAypspLNYFHFPCSVCTSVNEVICHGIPDLRELEQGDIVNIDVSVYVNGFHGDLNETYLVGkVDPDSLNVVETAFRSLQVAASLIKPGAMYRDIGNAIEKFTRTRNCS-VVKTYCGHGIGSLFHTAPNVPHyakNKATGIMKPGHIFTIEPminlGTWRDKTWpdnwtavttdgkRSAQFEHTFLVT 352
                 69**************988***************9944555588889999****************************************************97777677**********************************98886.7789***********9988755454558999***********7777555333223444666666636**********9 PP

>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   3.9   1.7e-06     0.012       1      38 [.       2      43 ..       2      45 .. 0.78
   2 ?   -0.9   0.2      0.21   1.4e+03      13      21 ..     177     185 ..     173     190 .. 0.79
   3 ?   -0.0   0.1      0.11   7.5e+02      11      25 ..     266     281 ..     261     283 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-06
                -TTT--....B----EE----S--.EESSHHHHHHHHHHHTT CS
  PF01753.13  1 CavCgk...aealkllrCsgCksv.kYCskeCQradwkeHkk 38
                C +C k   +e+l + + ++C+ v ++Cs+eC ++ w+eHk 
  MMETSP0890-20130614|7053_1  2 CPSCVKlkqREPLYFEKMGKCREVdYFCSQECFKKNWSEHKL 43
                667777666566666677899999788*************96 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.21
                 EE----S-- CS
  PF01753.13  13 lrCsgCksv 21 
                 ++Cs C sv
  MMETSP0890-20130614|7053_1 177 FPCSVCTSV 185
                 578888776 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.11
                 --EE----S--.EESS CS
  PF01753.13  11 kllrCsgCksv.kYCs 25 
                 k++r  +C+ v +YC+
  MMETSP0890-20130614|7053_1 266 KFTRTRNCSVVkTYCG 281
                 5566678998868997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.72
# Mc/sec: 1254.76
//
Query:       MMETSP0890-20130614|7055_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.97
# Mc/sec: 983.25
//
Query:       MMETSP0890-20130614|7057_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.21   11.0   0.0    1.4  1  PF02743.13 Cache domain


Domain annotation for each model (and alignments):
>> PF02743.13  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.5e-05      0.21      42      70 ..     196     223 ..     191     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.5e-05
  PF02743.13  42 kltkkiklgknGyafiidnngkvlahpnl 70 
                 + + + + gk G  f+id++g +++hp+l
  MMETSP0890-20130614|7057_1 196 TKLADPRTGKDGL-FVIDPSGSIIIHPDL 223
                 5566667899998.*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.44s 00:00:01.22 Elapsed: 00:00:00.77
# Mc/sec: 1325.78
//
Query:       MMETSP0890-20130614|7060_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.44s 00:00:00.95 Elapsed: 00:00:00.91
# Mc/sec: 753.14
//
Query:       MMETSP0890-20130614|7063_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-42  145.6   0.0    1.8e-42  145.1   0.0    1.1  1  PF01207.12 Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> PF01207.12  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.0   1.3e-46   1.8e-42       2     261 ..     125     392 ..     124     409 .. 0.88

  Alignments for each domain:
  == domain 1    score: 145.1 bits;  conditional E-value: 1.3e-46
  PF01207.12   2 lAPmagvtdlpfRellrevgatdlvvtemvtakaivreekvtirmlseleeetplalQllgsdpallaeaAklvad.lgadeIDlNvGCPakkvtkggaGaaLlrkpdlvaqivkavvkaveipvtvkirigid...dskenalelarrveaaG..aqaltvHgRtraqnyegtadweaIkev...kqavs..ipviaNGdikdaed..aqailaetGadgvMigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelged 261
                 +AP+  + +lp+R+ll  +ga+ ++++em  a  ++   +  +  l   ++e+   +Q+ + +p +   a ++  d  ++d +D+N+GCP ++v ++g+Ga+L++k + +++ivk +   +   vt kir+g+     s ++ + +a+  + +G   + + +HgR+r ++y+  adw+ I+ v   +++ +  +p+i+NGdi + +d  +++ +a ++++  M+grga  +Pwl     ++k++++   + + e++e+++  +++ +e+ g d
  MMETSP0890-20130614|7063_1 125 VAPLTTIGNLPWRRLLISLGAD-ITCAEMSLASSLIDGANTEWAHLRRHPDEKIFGIQITAPKPYVSGRACEMIRDyCQVDFVDINMGCPLDTVCNNGMGAFLPTKIKKAESIVKSCLAVLPCAVTCKIRTGWTndkRSAHTFVGFAQSWQVKGhsLNCVFIHGRSRNDRYSRLADWDYINTVaslQDDYAapLPIIGNGDILTYHDyeMSRKTAPNTCNCAMLGRGAIIKPWLPT---EIKEKRNWDVS-APERLEFLKTFVRYGLEHWGAD 392
                 79********************.*****************************************************999******************************************************976666778899999999***88899******************9876652116666678************7633789999*******************97...66664443333.4666777777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       623  (0.0455676); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.46s 00:00:01.24 Elapsed: 00:00:00.74
# Mc/sec: 1638.59
//
Query:       MMETSP0890-20130614|7061_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-26   91.0   0.0    1.2e-25   90.1   0.0    1.3  1  PF02769.17 AIR synthase related protein, C-terminal domain
    1.6e-15   56.9   0.3    2.9e-14   52.9   0.0    2.6  2  PF00586.19 AIR synthase related protein, N-terminal domain
    0.00047   19.9   0.0     0.0012   18.6   0.0    1.7  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF02769.17  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   2.7e-29   1.2e-25       2     146 ..     400     573 ..     400     577 .. 0.82

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 2.7e-29
                 SSEEEEEE-----TT-HHHHHHHHHHHCT-GTB---CCCH.HHHHHHHHHHHH..HT--SEEEE------CCCHHHHHHT---EEEEEGG..............GSHHHHHHH-HHHHHHC...........................S-SS-EEEEEEGGGHHHHHHHHHHTT-GGEEEEEEEESS- CS
  PF02769.17   2 pGdvliltgslglggsgtslkrkllessglplqlgdlllektliyvvqalaae..kglvkaahDitgGGLlgalaemafasgvgaeidld..............evplfeelelalemlfs...........................ensGrllvvvppedaeavlalleeeglheaaviGevtdkn 146
                 pGdvlilt+++g+g+++ ++     ++++++      +   ++++ ++a+  +  +++v+a++Ditg+GL+g+l+em++as  ga id++              ++ +f+ l+                                   ++ G+ll +v + da+av+  l+++g + aaviG v d++
  MMETSP0890-20130614|7061_1 400 PGDVLILTKPIGTGCIM-AAD----MRAKAN-YPYVQATINSMLQSNRAASNIfiSHEVHACTDITGFGLIGHLNEMCRAS-KGALIDINlsdipflpgaltlaQKGIFSSLQ-------PenlnarravinhdavanradyallfdpQTAGGLLAAVNASDAQAVVHRLKAAGYPHAAVIGVVQDTE 573
                 8****************.442....344444.34566677799999999999999*************************9.**********777666666666555555555.......0333445556689999999999999******************************66*******9986 PP

>> PF00586.19  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   6.3e-18   2.9e-14       2      96 .]     277     369 ..     276     369 .. 0.90
   2 ?    1.2   0.0     0.086   3.9e+02      22      51 ..     521     551 ..     477     571 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 6.3e-18
                 --B--EEGG-SEEE-BEEEEE--CCCHHT.-TTT---HHHHHHHHHHHC------EEEEEEEETTTSBHHH...HHHHH---HHHHHHCT-EE----E CS
  PF00586.19   2 ddaavielgkdeelvvttdkvethnhptaidpydgaatavagnlrDiaamGAkplalldglalsnlldpea...leeiveGladaanefgvplvgGdt 96 
                 dd+av++ +  + lv+++d++   +   + dpy +++ a+ ++l+D+ amGAkp+ +l+ + + +++++++   le+ ++G+++  ++++++lvgG+t
  MMETSP0890-20130614|7061_1 277 DDGAVVKYQ-ATTLVHSIDFFRNFL---T-DPYLLGRVAANHALSDCEAMGAKPITALALVVIPYGNEKSQgftLEALMHGIRKTLDQADCALVGGHT 369
                 9******97.***********8866...5.9************************99999999555544445568**********************8 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.086
                 E--CCCHH..T.-TTT---HHHHHHHHHHHC- CS
  PF00586.19  22 vethnhpt..aidpydgaatavagnlrDiaam 51 
                 v    + +  + dp++ +  ++a+n++D  a+
  MMETSP0890-20130614|7061_1 521 VANRADYAllF-DPQTAGGLLAAVNASDAQAV 551
                 55555555546.9***************8875 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.6e-07    0.0012     155     198 ..      26     120 ..       6     122 .. 0.71
   2 ?   -4.0   0.0       2.1   9.8e+03     138     158 ..     545     567 ..     539     575 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.6e-07
                 EEE-............................................-GGGCHHSS--BES.SSSBBE-TTSBC.......SSTTEEE---TCEE CS
                 xxxx............................................xxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxx RF
   PF07992.9 155 vvvG............................................tkllaekagveldp.rggivVdeylrt.......svpgiyaiGDvaeg 198
                 +++G                                             k+l  + g++ ++ +g++++dey+r        ++++++a+GD+a++
  MMETSP0890-20130614|7061_1  26 IISGcealgaskphpdstqqflecrfadtqkiqclpydecvwctqasaPKFL-ATSGLKYEEnGGFVLIDEYQRCslaknniTLDHVFAAGDCASV 120
                 4444666666666666666666666666666666666666666666666777.677888866256789*****9988887767***********86 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2.1
                 HHHHHHHHHHCSTTT..EEEEE- CS
                 xxxxxxxxxxxxxxx..xxxxxx RF
   PF07992.9 138 vedsdeilellekpk..kvvvvG 158
                  +d+++++++l+ +   + +v+G
  MMETSP0890-20130614|7061_1 545 ASDAQAVVHRLKAAGypHAAVIG 567
                 57888888888887778888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.41s 00:00:01.25 Elapsed: 00:00:00.95
# Mc/sec: 1485.74
//
Query:       MMETSP0890-20130614|7065_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-25   89.9   0.0    1.5e-25   89.6   0.0    1.1  1  PF01738.13 Dienelactone hydrolase family
    2.2e-11   43.5   0.0      3e-11   43.1   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    7.2e-06   25.9   0.5      0.022   14.5   0.0    2.2  2  PF12697.2  Alpha/beta hydrolase family
    2.7e-05   23.3   0.1      0.023   13.8   0.0    2.3  2  PF00326.16 Prolyl oligopeptidase family
     0.0024   17.2   0.0     0.0034   16.7   0.0    1.1  1  PF02230.11 Phospholipase/Carboxylesterase
     0.0098   15.3   0.1      0.095   12.1   0.0    2.0  2  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   6.8e-29   1.5e-25      17     217 ..      59     267 ..      51     268 .. 0.75

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 6.8e-29
  PF01738.13  17 vvviqeifGvn.knirdiarrlaeeGyvalapdlYarqgldandtaeaasalrellkkreeavlddlkaainyl.kslpevstkkvgvvGfClGGalalllAaen.pevdaavafYG..altlekplee.aakikapilahlgeeDpfipaeaaedleealakankd.lelkiYpgagHaFaadsre.......sydeaaaedawervleffkql 217
                 + + + + G +  +   +a+rl++ Gy ++++dlY  ++  +  ++e  s  re lk+  + ++++  aa+++  k+lp   +  ++ +G+ClGG+ + +lA+   ++++a v+f+G   ++ + + ++    +  ++l+++g++Dpf+p+   + +++++ + +++ ++l +++ga+H+F++++++       +y+  aa+ aw      + ++
  MMETSP0890-20130614|7065_1  59 ITIYHTAAGPRdLFLHFTAARLVNCGYSVFIADLYGDEY-GQGWQSEFSSKKREELKDI-KILRKRSAAALDTFqKYLP--ADVPIAAIGYCLGGRAVAELAKAGeNRLQALVSFHGilDDFTPVECTDsNSLAWVRMLILHGDQDPFVPHL--DAFRNQMHRHGAAvCDLVSFSGAYHGFTNPGQAlnekigfDYNRRAAALAWHLCEHHLSTY 267
                 5566666666655556689*****************999.2333333333333333444.3333344455554414555..5579*****************999899*********88444444444404455689*************98..5888888777765379***********************************9888877776 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.3e-14     3e-11       4     141 ..      61     231 ..      58     232 .. 0.67

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.3e-14
   PF12695.2   4 lvhGaggdssa.yeplaealakrgfavvavdlpghgasegaa.......................aakrvlaadlldleriilvGhSlGGgvalelagrd.drvkglvllap....f..pd.gedlakltlpvllihGtrDgvvpp.eeaeklakalp.gdaelvviegasH 141
                 ++h a+g ++  ++ +a +l++ g++v++ dl g+   +g +                       a++++  + l+   +i+ +G +lGG++++ela+   +r+++lv + +    f   + +++ +   + +l++hG++D +vp+ +++++ +++ + +  +lv + ga H
  MMETSP0890-20130614|7065_1  61 IYHTAAGPRDLfLHFTAARLVNCGYSVFIADLYGDEYGQGWQsefsskkreelkdikilrkrsaaALDTFQ-KYLPADVPIAAIGYCLGGRAVAELAKAGeNRLQALVSFHGilddFtpVEcTDSNSLAWVRMLILHGDQDPFVPHlDAFRNQMHRHGaAVCDLVSFSGAYH 231
                 567777776662457899************86444332222233445556666666666664443333333.4444446*******************988***********4444233112333344455*************6426777766666656668899999988 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.5e-06     0.022       9      96 ..      67     168 ..      48     183 .. 0.66
   2 !    9.9   0.1   0.00024      0.56     177     216 ..     190     232 ..     173     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.5e-06
                 -------H.HHHHH.TTTSEEEEE----....-------S...S--HHHHHHHH.......HHHHHH--.....-.-EEEE--------HHHHHH----.EEEEEE CS
   PF12697.2   9 gsaeswrp.laeaL.aagyrvvapDlpG....hGrSdrppdydpdtledlaadl.......aalldalgl....r.pvvlvGHSlGgavalaaaarrpdlvrglvl 96 
                 g  + + +  a +L   gy v++ Dl G    +G+ +  ++     l     d+       aa+ld+++     + p+  +G++lGg +++++a++  +++++lv 
  MMETSP0890-20130614|7065_1  67 GPRDLFLHfTAARLvNCGYSVFIADLYGdeygQGWQSEFSSKKREEL----KDIkilrkrsAAALDTFQKylpaDvPIAAIGYCLGGRAVAELAKAGENRLQALVS 168
                 44555555344477345999999999887744666444333222222....22222222224555555545544459***********************999984 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00024
                 S-EEEEE-----HHH..HHHHHHHHHHSTT.EEEEE---SSSS CS
   PF12697.2 177 vPvlviageaDrvvp..peearrlaealpg.arvvvlpgagHl 216
                 v +l+++g++D++vp  ++   ++ +++   +++v ++ga H 
  MMETSP0890-20130614|7065_1 190 VRMLILHGDQDPFVPhlDAFRNQMHRHGAAvCDLVSFSGAYHG 232
                 579************86555567766654337*********97 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00065       1.5      10     100 ..      80     174 ..      72     189 .. 0.66
   2 !   13.8   0.0   9.9e-06     0.023     143     196 ..     188     240 ..     173     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00065
                 HHH----EEEE----------TTT----GGGGHHHHHHH......HHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE----- CS
  PF00326.16  10 ladrGyvvvvanirGsggyGekwhdagkrklgqnefdDf......iaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvd 100
                 l + Gy v++a++ G + yG+ w+  ++ k + +e++D+       aaa    ++++     +a+ G   GG  v+  +    ++ +a+v+  g++d
  MMETSP0890-20130614|7065_1  80 LVNCGYSVFIADLYGDE-YGQGWQSEFSSK-KREELKDIkilrkrSAAALDTFQKYLPADVPIAAIGYCLGGRAVAELAKAGENRLQALVSFHGILD 174
                 4589**********987.*******99866.455666652222112222222344455555677777777777777777766666666666666665 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 9.9e-06
                 ----EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES---------HHHH CS
  PF00326.16 143 aypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegHgigkprakv 196
                 a +++l++hG++D+ v   +   + +++ ++g   ++l+ f ++ Hg+ +p++  
  MMETSP0890-20130614|7065_1 188 AWVRMLILHGDQDPFV--PHLDAFRNQMHRHGAAvCDLVSFSGAYHGFTNPGQAL 240
                 5679************..5666788************************998765 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06    0.0034      71     198 ..     104     231 ..      97     237 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
  PF02230.11  71 elspnkkedeagikksaekleelidaelkkgipssriiigGFSqGaalalylaltspkplggivafsgalplnqkleqs.atkvakipilqlHgeeDevvplalgkaakellktllnkvelksyeglgH 198
                 e+s +k+e+ ++ik   +   + +d+ +k+      i+ +G+  G+  + +la + +++l   v+f g+l   + +e   ++++a + +l lHg++D+ vp  l +  +++++     ++l+s+ g  H
  MMETSP0890-20130614|7065_1 104 EFSSKKREELKDIKILRKRSAAALDTFQKYLPADVPIAAIGYCLGGRAVAELAKAGENRLQALVSFHGILDDFTPVECTdSNSLAWVRMLILHGDQDPFVPH-LDAFRNQMHRHGAAVCDLVSFSGAYH 231
                 567777888889999999999999999999988889**********************************9888887551455669***************5.44555555555555577777777766 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.2e-05     0.095      31      74 ..     124     168 ..      87     178 .. 0.92
   2 ?    0.4   0.0      0.15   3.4e+02     178     191 ..     192     205 ..     181     212 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGGGEEEEEE CS
  PF00561.15  31 ardleavldalglkk.ltlvGhSmGGmialayaaeypdrvkamvl 74 
                 a++l+++ + l+ +  ++++G+++GG+ ++++a     r +a+v+
  MMETSP0890-20130614|7065_1 124 AAALDTFQKYLPADVpIAAIGYCLGGRAVAELAKAGENRLQALVS 168
                 78999999*************************999999999996 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.15
                 EEEEECCTTSCCHH CS
  PF00561.15 178 tlvisgtdDplvpy 191
                  l+++g++Dp+vp 
  MMETSP0890-20130614|7065_1 192 MLILHGDQDPFVPH 205
                 69**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.46s 00:00:01.05 Elapsed: 00:00:00.83
# Mc/sec: 776.65
//
Query:       MMETSP0890-20130614|7069_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-19   67.5   0.0    1.2e-18   67.1   0.0    1.1  1  PF10294.4  Putative methyltransferase
    1.2e-09   37.9   0.0    1.6e-09   37.5   0.0    1.1  1  PF13489.1  Methyltransferase domain
    2.1e-09   37.7   0.0    3.3e-09   37.2   0.0    1.3  1  PF12847.2  Methyltransferase domain
    1.3e-07   31.2   0.0    1.6e-07   30.8   0.0    1.1  1  PF13847.1  Methyltransferase domain
    5.4e-06   26.6   0.0    1.2e-05   25.6   0.0    1.6  1  PF08242.7  Methyltransferase domain
    7.5e-05   23.0   0.0    0.00013   22.2   0.0    1.4  1  PF08241.7  Methyltransferase domain
    0.00018   21.3   0.1     0.0003   20.6   0.1    1.4  1  PF13659.1  Methyltransferase domain
    0.00075   18.8   0.0    0.00099   18.4   0.0    1.1  1  PF03602.10 Conserved hypothetical protein 95
     0.0066   15.4   0.0     0.0083   15.1   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0086   16.3   0.0       0.03   14.5   0.0    1.9  2  PF13649.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.024   13.9   0.0    1.2  1  PF05175.9  Methyltransferase small domain
       0.03   13.7   0.0      0.041   13.3   0.0    1.1  1  PF06080.7  Protein of unknown function (DUF938)
       0.12   11.3   0.0       0.15   10.9   0.0    1.1  1  PF01596.12 O-methyltransferase


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.1e-21   1.2e-18      15     169 ..      43     201 ..      38     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 1.1e-21
   PF10294.4  15 nsvgrvvWdaavvlskylekk..lakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDlee...llellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketk.ilvaykkr....reaekkFfk 169
                  + g vvW a+ +l++ + +k  ++++  +++ s l+vlE+G+GtGl  +a+al   +a+v+ tD  +   +  l k+  +l +++ + + ++ +L+ ge l    ++++++D+ilaaD +Y+ +s ++L++t+k+ l+++t   +++y         +  +Ff+
  MMETSP0890-20130614|7069_1  43 SGHGDVVWSAGELLAILIMEKrdIFENIFERDISALRVLEVGAGTGLPSLAAALR--GAQVLATDARNpaaIYSLAKTATALHRKQPQVQFSVAPLNFGEIL----CNESPFDVILAADTIYNPESHTQLLHTVKHSLKPQTGiAVFSYALHknvsDTQVRNFFH 201
                 57899**********99988622345577899*********************99..9*******988665667888999996657777777889***9977....78889*****************************9995333333221122333345665 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.5e-12   1.6e-09      10     120 ..      64     189 ..      56     220 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.5e-12
   PF13489.1  10 adllerllarlkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk..........akqaqksqfdeed.....aaepagkfdlivarevlehvpdpeellrqiaellkpg.Gylllstpnas 120
                 +d+ e++++r+    rvL++G+GtG  +   a +g++v + D  + a  +          +++++++qf+          ++  +fd+i+a +++++  ++++ll +++  lkp+ G++++s+ + +
  MMETSP0890-20130614|7069_1  64 RDIFENIFERDISALRVLEVGAGTGLPSLAAALRGAQVLATDARNPAA-IyslaktatalHRKQPQVQFSVAPlnfgeILCNESPFDVILAADTIYNPESHTQLLHTVKHSLKPQtGIAVFSYALHK 189
                 67889999999999***********877778999********954333.35899999988777777777322222222334666******************************99*****996543 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   3.1e-12   3.3e-09       3     106 ..      78     180 ..      76     186 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 3.1e-12
   PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDp.seesl.elarenaksldleeriellqgda..keelsllerfDavllkg.ltldallal.deprrvlealpkllkp.ggr 106
                  r+l++G+GtG+ sl++a   +ga+v++ D+ +++++ +la+ +++ +++++++++  + +   e l +  +fD++l+ +           +  +++l+ +++ lkp  g+
  MMETSP0890-20130614|7069_1  78 LRVLEVGAGTGLPSLAAAL--RGAQVLATDArNPAAIySLAKTATALHRKQPQVQFSVAPLnfGEILCNESPFDVILAADtI------YNpESHTQLLHTVKHSLKPqTGI 180
                 58*****************..**********75555515555555559999*******99965666677777******9932......222335677*********94454 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.6e-10   1.6e-07       3     123 ..      76     193 ..      74     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.6e-10
   PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiD.iseeaielAkeraqklgfe..nveFiq..gdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeelee 123
                 s+++vl++G+GtG  +l++a     ga+v   D +++ ai +  + a  l+ +  +v+F +   ++ e+ ++ e++fD++++ +++++   + + l  +++ lkp++ + v s +l++++     +
  MMETSP0890-20130614|7069_1  76 SALRVLEVGAGTGLPSLAAA---LRGAQVLATDaRNPAAIYSLAKTATALHRKqpQVQFSVapLNFGEILCN-ESPFDVILAADTIYNPESHTQLLHTVKHSLKPQTGIAVFSYALHKNVS----D 193
                 6789****************...459*******67999**8877766666666679*****44455565543.489*************************************99555444....3 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.1e-08   1.2e-05       1      96 [.      81     177 ..      81     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.1e-08
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.....ssfDvvvasnvlhhlkdirevldnirklLkpg 96 
                 Le+G+GtG  + a + +  +++++++D    a     +k+a   +++  +v++ +  l     +     s fDv++a++++ + +  +++l+ +++ Lkp 
  MMETSP0890-20130614|7069_1  81 LEVGAGTGLPSLAAALR--GAQVLATDARNPAAIYSLAKTATALHRKQPQVQFSVAPLNFG--EilcneSPFDVILAADTIYNPESHTQLLHTVKHSLKPQ 177
                 8*******776666666..********9766662444444444445555666666554433..2347789*****************************96 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-07   0.00013       1      90 [.      81     177 ..      81     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.2e-07
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlsee....mlatakerlkeegle....lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpg 90 
                 L+vG+Gtgl + a a r +a+v+++D  +     +la+  ++l++++++    +   ++ e+  +++ fDv+++  ++   e++ ++l+ ++  Lkp 
  MMETSP0890-20130614|7069_1  81 LEVGAGTGLPSLAAALR-GAQVLATDARNPaaiySLAKTATALHRKQPQvqfsVAPLNFGEILCNESPFDVILAADTIYNPESHTQLLHTVKHSLKPQ 177
                 89***************.********999977775555555555555556755666669999999*******************************96 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.9e-07    0.0003       2     108 ..      78     177 ..      77     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.9e-07
   PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEl.dpraaalaarnlaraglaer.vrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpg 108
                 +rvl++g+G+G   laa+ ++ a++l+++  +p+a+   a++++  +++++ v++ ++ l   + l  +++fd++++     +         + ++++l+   + lkp+
  MMETSP0890-20130614|7069_1  78 LRVLEVGAGTGLPSLAAALRG-AQVLATDArNPAAIYSLAKTATALHRKQPqVQFSVAPLNFGEILCNESPFDVILAADTIYN--------PESHTQLLHTVKHSLKPQ 177
                 69*******************.*******879999888777766655544447888887755554588999**9997433332........244555555555555555 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.4e-07   0.00099      30     150 ..      64     182 ..      61     203 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.4e-07
  PF03602.10  30 ealFnilaaeelegarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkkeefdlvfl.DPPYakellieellellaekkllkenaliv 150
                   +F+ + ++++   rvL++ aG+G  +l A+ Rga+      ++++a+  l++  +al+ ++ + ++     +  + l  ++++fd++++ D  Y+ e+   +ll++++ ++l  +++++v
  MMETSP0890-20130614|7069_1  64 RDIFENIFERDISALRVLEVGAGTGLPSLAAALRGAQVLATDARNPAAIYSLAKTATALHRKQPQVQFSVAPLNFGEIL-CNESPFDVILAaDTIYNPESH-TQLLHTVK-HSLKPQTGIAV 182
                 56787777777************************988888889999999**********8875555555555555555.677999*99843777888764.66666655.33333444444 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.9e-06    0.0083     164     252 ..      79     177 ..      65     204 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.9e-06
   PF06325.8 164 evlDvGtGSGiLaiaaakLgakkvvavDi.DevAvkv.akeNaelNkveakleva....llkelp..kekadvivaN.ILaev..lieLaedikelvkeg 252
                 +vl vG+G+G+ ++aaa+ ga+ v+a+D  ++ A+ + ak   +l + + +++      +  e++  ++++dvi+a   + ++   ++L+ ++k+ +k++
  MMETSP0890-20130614|7069_1  79 RVLEVGAGTGLPSLAAALRGAQ-VLATDArNPAAIYSlAKTATALHRKQPQVQFSvaplNFGEILcnESPFDVILAAdTIYNPesHTQLLHTVKHSLKPQ 177
                 79**************999985.89999736677765255555555554455543213223333343599999997313332211355666666666654 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.9e-05      0.03       1     100 [.      80     177 ..      80     179 .. 0.76
   2 ?   -1.9   0.0       3.8     4e+03      71      92 ..     182     202 ..     180     205 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.9e-05
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseeal....elakerlsskglkvkfvqada..ralpfeegefdlvvcaglslehlspkqlealleeiarvlkpg 100
                 +l++G G+G     l+ al +g  ++v++ D +  a     +++++ l +k+++v+f +a +   ++  +e++fd+++ a      ++p+   +ll+ + + lkp 
  MMETSP0890-20130614|7069_1  80 VLEVGAGTGLP--SLAAAL-RG--AQVLATDARNPAAiyslAKTATALHRKQPQVQFSVAPLnfGEILCNESPFDVILAADT---IYNPESHTQLLHTVKHSLKPQ 177
                 799*****854..444445.34..9******9998874444445555555778999988776337799***********644...699**********99999985 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.8
   PF13649.1  71 vvcaglsleh.lspkqleallee 92 
                 v++ ++ l+  +s+ q +++++ 
  MMETSP0890-20130614|7069_1 182 VFS-YA-LHKnVSDTQVRNFFHL 202
                 455.66.5666999999999986 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-05     0.024      31      82 ..      76     126 ..      65     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.3e-05
                 ------B-------HHHHHHHH-TT----EEES.BHHHHHHHHHHHHH----. CS
   PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDi.narAvesakanleanklen 82 
                  a +vl++G+G+G+ ++a+a ++ +  v ++D+ n +A+ s  ++++a + ++
  MMETSP0890-20130614|7069_1  76 SALRVLEVGAGTGLPSLAAALRGAQ--VLATDArNPAAIYSLAKTATALHRKQ 126
                 45579*****************999..99999637788888888877665554 PP

>> PF06080.7  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.9e-05     0.041      27     139 ..      76     182 ..      63     198 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-05
   PF06080.7  27 e..rvLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawade.lalsnlkpPleldvtaevapvereappapasidailsinllHispwsaveglfagagellkkkavlvi 139
                 +  rvLE+++GtG     +A+al  ++ +++d  +    +i   a+  +al+  +p ++  v   + +   e+  ++ ++d+il++ +++  p  + + l++++++ lk+++ + +
  MMETSP0890-20130614|7069_1  76 SalRVLEVGAGTGLPS--LAAALRGAQVLATDARNPA--AIYSLAKTaTALHRKQPQVQFSV--APLNFG-EILCNESPFDVILAADTIY-NPE-SHTQLLHTVKHSLKPQTGIAV 182
                 3348*********865..8*************87766..46665544045555555555544..455665.678999**********986.444.455677888888887765554 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.15      32     147 ..      63     172 ..      51     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
  PF01596.12  32 eegqfLsllvklvgakkvleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagvedkielilgdalkvL.eelvedkkqgefDlifvDaDkssYknyyeklleLvkv 147
                 +   f +++ + + a +vle+G  tG   La+al    + +++a d  + aa  +++    a   ++ +++ + a     e l++++    fD+i   aD    ++ + +ll+ vk+
  MMETSP0890-20130614|7069_1  63 KRDIFENIFERDISALRVLEVGAGTGLPSLAAALR---GAQVLATDARNPAAIYSLAKTATALHRKQPQVQFSVAPLNFgEILCNES---PFDVIL-AADTIYNPESHTQLLHTVKH 172
                 555566667777899****************9995...889****999888777777777777778888888888776636666666...499876.58887778888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.93
# Mc/sec: 649.34
//
Query:       MMETSP0890-20130614|7067_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-14   51.1   0.0      1e-13   50.7   0.0    1.1  1  PF03473.12 MOSC domain


Domain annotation for each model (and alignments):
>> PF03473.12  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   7.5e-18     1e-13       8     100 ..      30     134 ..      19     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 7.5e-18
                 ----------TTSEEEEECHHHHHHHHHSG.GGG...SCCG----EEE....E--T...TCCGB-EEEE----EEEEEE-----THHHHHHCHCCH........... CS
  PF03473.12   8 lapskvhggderqvllisresladlnerlgersl...kperFraNlvv....sgveafaedtwlirririGgvelevsgpcerCvvttvdqetgardpe.......g 100
                  ++ + ++++++++ll++r+ +a+ln  l +  +   +++ FraNl+v    ++ e + e++w +   +  g+++  +gpcerC+++  d++t+ r++         
  MMETSP0890-20130614|7067_1  30 APNNETSFANSAPLLLVTRHAVAKLNSNLIKLNAqpiTADHFRANLLVsesaQSAE-YSEERW-SALHFYNGLRFSTLGPCERCATVDLDPDTAIRRDGgivlrtiA 134
                 5677899********************98866667779**********65433333.******.66667899***********************944344444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 596.09
//
Query:       MMETSP0890-20130614|7072_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-10   40.3   0.0    5.3e-10   39.3   0.0    1.6  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   3.9e-14   5.3e-10       2     103 ..       9      97 ..       8      98 .. 0.93

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 3.9e-14
                 SBEEEEEEEETSSSCEEEEEEEEET..TEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
  PF00169.24   2 ikeGyllkksellktwkkryfvLts..nyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                 i++G l k++  +k wk+r fvL+   + L +f++     + ++kg+i ++++ ++ +++t           f++++ +++sy+l+aes+e +++W++ l ++ 
  MMETSP0890-20130614|7072_1   9 IIQGPLRKRG--QKGWKERLFVLRAqdGTLGFFENNG---EVTLKGKIKIRNALIQSDENT----------NFVVSTASGTSYILQAESQEIKEKWMAVLIRAA 97 
                 6789999999..************999**********...8***************99998..........5999999999*****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 797.64
//
Query:       MMETSP0890-20130614|7071_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-11   43.7   0.1    4.8e-11   42.2   0.1    1.7  1  PF04564.10 U-box domain
  ------ inclusion threshold ------
      0.022   14.3   1.3      0.048   13.3   0.1    2.1  2  PF10957.3  Protein of unknown function (DUF2758)
      0.027   13.1   0.1      0.049   12.2   0.1    1.4  1  PF12623.2  RNA repair, ligase-Pnkp-associating, region of Hen1
      0.031   13.6   0.0       0.11   11.9   0.0    1.9  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
      0.033   13.2  15.6        0.7    8.9   0.0    2.9  2  PF04641.7  Replication termination factor 2
       0.16   12.0   0.0       0.16   12.0   0.0    3.3  4  PF09261.6  Alpha mannosidase, middle domain


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   2.1e-14   4.8e-11       2      72 ..     478     553 ..     478     554 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 2.1e-14
                 -GGGB-TTT-SB-SSEEE-....TTT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHCC CS
  PF04564.10   2 PdefldpitlelmkdPvil....PsgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfleekk 72 
                 P+ f++p+t+ +m+dPv l      g +++r++i+ +++ + + dP+t r + ++ +l  n+el + I+k+ ++++
  MMETSP0890-20130614|7071_1 478 PPLFICPLTRVVMTDPVQLfignEAGLSYERAAIQDWIKTHPHQDPITrRYHEKSLHLETNIELAQIIQKWRQSQE 553
                 889**************9844434679*********************88899999***************99886 PP

>> PF10957.3  Protein of unknown function (DUF2758)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.1e-05     0.048      11      56 ..     151     198 ..     146     202 .. 0.83
   2 ?   -1.7   0.0         1   2.3e+03      11      26 ..     529     544 ..     526     547 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-05
   PF10957.3  11 HEkDLeeevneFLkkidedqlvD..ikYnvaaieeeeeeqiYCFsAli 56 
                 H  DL +++n+ ++  + + l+   i  nva  +++ e+q+ CFs +i
  MMETSP0890-20130614|7071_1 151 HQVDLPDKINRAIRLASIEVLIQslIDLNVAQNKDDAENQLACFSFVI 198
                 88899999999888777777776557789****************877 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1
   PF10957.3  11 HEkDLeeevneFLkki 26 
                 HEk L+ e n  L++i
  MMETSP0890-20130614|7071_1 529 HEKSLHLETNIELAQI 544
                 *****99999888776 PP

>> PF12623.2  RNA repair, ligase-Pnkp-associating, region of Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.2e-05     0.049     211     237 ..     512     538 ..     504     547 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
   PF12623.2 211 egWLaehPerelitrryLkrrrslvre 237
                 ++W+++hP+++ itrry +++ +l ++
  MMETSP0890-20130614|7071_1 512 QDWIKTHPHQDPITRRYHEKSLHLETN 538
                 79***************9988888655 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.11      14      47 ..     483     519 ..     480     531 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.7e-05
                 -TTT-SB-SSEEEES...----EEEHHHHHHHHTTT- CS
   PF11789.3  14 CpltlkpfkePvtsk...kCnHvFEkeaIlkmlkrkk 47 
                 Cplt+ ++++Pv+     +   ++E+ aI++ +k++ 
  MMETSP0890-20130614|7071_1 483 CPLTRVVMTDPVQLFignEAGLSYERAAIQDWIKTHP 519
                 ************8765558899***********8765 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0  12.0      0.31     7e+02     164     257 ..     305     411 ..     169     415 .. 0.70
   2 ?    8.9   0.0   0.00031       0.7     113     253 ..     480     633 ..     453     637 .. 0.56

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.31
   PF04641.7 164 dvvp.lnptkeelellkarleeekakkkkkkkkkkkkkaeakgekaeaeaksksskee............sskagkkkekkklkkkkslaekneksevykslftssk 257
                 d+v  l  ++ e+ + +a++++  ak  ++ ++k+ ++a+ +++++++++ s +s++                 ++++e+k++++++++++k+++++   slf++++
  MMETSP0890-20130614|7071_1 305 DIVEeLVASGAEESAAQAQMDKLCAKLMARANAKAATAASLTTSSEDEQTLSIESENDlvdevgssvsavLMRRRRQEENKEEEEYRRKERKKAQNKEQYSLFQNKN 411
                 55545888899999************99999999999888777776666655555444899****999874555666777777888888999999999999998765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00031
   PF04641.7 113 pfiCpvtglelngktkfvalrkcGcVfsekalkev.k..eekvCpvCnkefkeedv.....vplnptkeelellkarleeekak......kkkkkkkkkkkkaeakgekaeaeaksksskee.........sskagkkkekkklkkkkslaekneksevykslf 253
                  fiCp+t+  +++ ++ ++  + G  ++  a+++  k   ++     ++ ++e+++     + l +  +   + +++l ++k+       + + kk kk   ++ ++  ++          +         ssk++k+  + ++ +++++++++ + + y s +
  MMETSP0890-20130614|7071_1 480 LFICPLTRVVMTDPVQLFIGNEAGLSYERAAIQDWiKthPHQ--DPITRRYHEKSLhletnIELAQIIQKWRQSQEQLPQRKSYgflrirNSSTKK-KKALFQHRASFPRRGDI-------TppppilrqsSSKSRKRIPSLRTWTRSAQKSEQRNLKSYLSAI 633
                 5********************************974543222..2356667766443333355555555555555555555555554432222222.22222222222222211.......0222223322555555555555555555555555556665555 PP

>> PF09261.6  Alpha mannosidase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.1e-05      0.16      32      80 .]     258     310 ..     241     310 .. 0.71
   2 ?   -3.1   0.1       3.6   8.3e+03      29      54 ..     403     423 ..     381     431 .. 0.45
   3 ?   -2.0   0.1       1.7   3.8e+03      15      46 ..     527     558 ..     522     580 .. 0.64
   4 ?   -0.5   0.0      0.57   1.3e+03       9      27 ..     615     633 ..     614     642 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.1e-05
                 HCS---...HH--X......HHHHHHHHHCTBTTTXXXXXXH.HHHHHHHHHH CS
   PF09261.6  32 slaklt...kleekypkeeleklwknllllqfHDalpGtskq.eVyedyvkrl 80 
                  l + +   ++++k+p +++++++    ++q HD  +Gt ++ eV++d+v++l
  MMETSP0890-20130614|7071_1 258 KLCSSKfetQQTNKQPYQSINSVSSGSIVSQLHDGPTGTIIRsEVVNDIVEEL 310
                 333333443333467999*********************98538999999876 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.6
                 HHHHCS---HH--X......HHHHHH CS
   PF09261.6  29 llfslakltkleekypkeeleklwkn 54 
                 + + +++ +     + +++ + ++++
  MMETSP0890-20130614|7071_1 403 QYSLFQNKN-----MRTSSTSLINRQ 423
                 222222222.....223333333344 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHCS---HH--X.... CS
   PF09261.6  15 rlnrklerllreaellfslakltkleekypke 46 
                 r++ k+ +l  ++el+ +++k+++++e+ p+ 
  MMETSP0890-20130614|7071_1 527 RYHEKSLHLETNIELAQIIQKWRQSQEQLPQR 558
                 56666666777777888888887544454544 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.57
                 SSHHHHHHHHHHHHHHHHH CS
   PF09261.6   9 sraaiKrlnrklerllrea 27 
                 +r+a+K  +r+l+++l ++
  MMETSP0890-20130614|7071_1 615 TRSAQKSEQRNLKSYLSAI 633
                 7999***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1595  (0.116662); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.12u 0.43s 00:00:01.55 Elapsed: 00:00:00.89
# Mc/sec: 1787.84
//
Query:       MMETSP0890-20130614|7070_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-37  127.7   0.0    6.1e-37  127.2   0.0    1.1  1  PF00481.16 Protein phosphatase 2C
    1.6e-05   24.3   0.0    0.00035   19.9   0.0    2.1  2  PF13672.1  Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   8.9e-41   6.1e-37      33     248 ..      50     293 ..      31     296 .. 0.93

  Alignments for each domain:
  == domain 1    score: 127.2 bits;  conditional E-value: 8.9e-41
                 HHCCCHCCCHHH..HHHHHHCHHHHHH.HHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EE......EESS---STTSHHHHHHHHH----EE-T--EE---.................................BSBSB----HHHC---ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHH CS
  PF00481.16  33 svaffavfdghg..greaakyarehle.eilkerksfleleklekalrksfladtdeelksseantepsksGstavvalirgqklyvAnvGDSravLcrsdnak......keltedHkpsnedEreRIeeaggsvsngngRvngs.................................LavsRalGdfelkpkekeqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdea 248
                 +++ f v+dghg  g+ ++++areh++ +++++ k+ + +  +++al++s+l+ t+e+l++s     +++sG+ta+++++ g + +v nvGDSra+L++ + +k      k+l+ d++p+++dEreR+++ g +v+    ++ g                                   a +R++Gd    +      v+aeP++++++i++ d+ li asDG+++ ++ + ++d++    +    p ea+++lv e+
  MMETSP0890-20130614|7070_1  50 QKHWFSVYDGHGpvGETCSQFAREHVPkQFVALMKEEKMT--VNDALIQSHLK-TNEMLAQSPV--DDQQSGTTAITIYLDGRTCIVSNVGDSRAMLGSINPEKpneivtKALSIDQTPYRRDERERVKKYGARVM-TADQIDGLeaihenwdcklgdeiddggdppriwaqdqeypgTAFTRSIGDSLAES----LGVVAEPEIQTHTINQYDRVLIAASDGIFEFITTKSCIDIALLYSD----PLEACKALVGES 293
                 567899*****866899**********8889988888888..9**********.******9555..49********************************************************************.58888888999999************************************99997....89***************************************98855....999999998665 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.1e-08   0.00035       2     121 ..      26     140 ..      25     171 .. 0.78
   2 ?    2.4   0.0     0.012        80     134     180 ..     213     267 ..     197     293 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.1e-08
   PF13672.1   2 GrshrrkgkpcqDafaired...sdgwllaVaDGaGsakrSdeGsrlaveaagealeelleeeeeq.eeallrailneilaevklkaeaeaqqeelkdyatTlllavitpgeivffqiGDgaiv 121
                 G+   +++k +qDafa+++d    + +++ V DG+G  + ++  s++a e + +++ +l++ee+ + ++al+++ l + +      ++ +++  + ++ +tT +   ++++++ + ++GD++++
  MMETSP0890-20130614|7070_1  26 GYYPSQADKANQDAFAVHVDllgTQKHWFSVYDGHG--PVGETCSQFAREHVPKQFVALMKEEKMTvNDALIQSHL-KTN------EMLAQSPVDDQQSGTTAITIYLDGRTCIVSNVGDSRAM 140
                 5556678899******66663434448889******..678999********999999998888774555554333.222......233344567778899999999**************985 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.012
   PF13672.1 134 epdsgeyane..ttfltse.....daeeel....rvrrlkl.epvdalllmTDGlsnsl 180
                 + + +ey ++  t+++ ++          +    ++++ +  +  + l+  +DG+ + +
  MMETSP0890-20130614|7070_1 213 WAQDQEYPGTafTRSIGDSlaeslG----VvaepEIQTHTInQYDRVLIAASDGIFEFI 267
                 5667788887777777777433331....0444455555540455888999***98543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1325.26
//
Query:       MMETSP0890-20130614|7073_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-34  119.8   1.6      4e-34  118.2   1.1    1.8  1  PF00091.20 Tubulin/FtsZ family, GTPase domain
    3.1e-31  107.1   0.5    1.1e-30  105.4   0.4    1.9  1  PF12327.3  FtsZ family, C-terminal domain
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.23   10.8   0.0    1.4  1  PF06305.6  Protein of unknown function (DUF1049)


Domain annotation for each model (and alignments):
>> PF00091.20  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   1.1   8.8e-38     4e-34       2     214 ..      31     200 ..      30     202 .. 0.97

  Alignments for each domain:
  == domain 1    score: 118.2 bits;  conditional E-value: 8.8e-38
                 EEEE-------HHHHHHHH.............................------EEEEEES-HHHHHT---SEE..EE---TTT---.-----TT---H.....HHHHTHHHHHHHC...TT-SEEEEEE----------HHHHHHHHHH-..--EEEEEEEE--TT---HHHHHHH---HHHHCT-SEEEEEEHHHHHCCS-TTSSHH.HHH CS
  PF00091.20   2 ivvvgvGqcGnqigdelweqlalehsiaaddkkpardddpsvfFaesgkgvylarsilvDtepkvlneikasqlkdlfnaenvisgksgagnnwavGykevgdeaaeeileeirrevekcdglesflilhslgGgTGSGlaskllerlkeeypkallvtivvfPsalevvvqpynailtlkeliehaDavlvldNdallaicgkslkiekeaf 214
                 i+v+gvG++G +++++++                              ++v ++++  v+t++++l + + +++  l ++++ ++g  gag+ ++vG++     aa e+  ei ++v   +g +++++++++gGgTG+G+a+++++++k    +al+v++v+ P+ +e+  ++++ai++++ l++++D+++v++Nd+ll i+ +++++  eaf
  MMETSP0890-20130614|7073_1  31 IKVIGVGGGGGNAINRMIA-----------------------------SDVRGVELWSVNTDAQALMGARCERR--LNIGKSSTRGL-GAGGEPSVGRQ-----AAIESSSEIANMV---KGSDMVFVTAGMGGGTGTGAAPVVAAAAKAS--GALTVGVVTKPFGFEGRKRMRQAIEGIEALEKEVDTLIVISNDKLLSIVPANTPVS-EAF 200
                 89****************9.............................8899****************998888..***********.***********.....9************...*******************************..*************************************************9999988.666 PP

>> PF12327.3  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.4   2.3e-34   1.1e-30       1      95 []     239     333 ..     239     333 .. 0.99

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 2.3e-34
                 --BB-----B----HHHHHHHHHHTSGGGT---------EEEEEE--------TTT---HHHHHS-TTS--B---EE-TT--S-BEEEEEB---- CS
   PF12327.3   1 GvammgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltleEveevaeeireevdeeanvivGasideeledeirvtvvatGie 95 
                 G+a+mg+G+ +g +ra +aa aaisspLLdv + +Akgv++ni gg+dltl+E+ ++ + i e++d++an+i+Ga +++ +e+e+ +tv+atG++
  MMETSP0890-20130614|7073_1 239 GSALMGIGTGKGPNRALDAAVAAISSPLLDVPVLNAKGVVFNIVGGRDLTLQEISQASNFIFENIDKNANIIFGALVQDGMEQEVSITVLATGLQ 333
                 89*******************************************************************************************86 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     5e-05      0.23      17      67 ..     128     178 ..     122     179 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5e-05
   PF06305.6  17 elpLslllliafllGallglLlsvlfllklrrqlrrlqkqlkklekeldql 67 
                     +++ ++a + Gal++++++ +f +  r++ r++   +++leke+d+l
  MMETSP0890-20130614|7073_1 128 TGAAPVVAAAAKASGALTVGVVTKPFGFEGRKRMRQAIEGIEALEKEVDTL 178
                 566789999999************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.17s 00:00:00.87 Elapsed: 00:00:00.99
# Mc/sec: 985.17
//
Query:       MMETSP0890-20130614|7077_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-31  108.2   0.1    4.7e-31  107.7   0.1    1.2  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
    3.9e-08   33.4   0.9      5e-08   33.1   0.0    1.6  2  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
    4.9e-05   23.3   0.0    9.3e-05   22.4   0.0    1.5  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.036   13.6   0.0    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
      0.025   13.6   0.0      0.037   13.0   0.0    1.2  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
       0.11   11.2   0.0       0.17   10.6   0.0    1.2  1  PF04029.9  2-phosphosulpholactate phosphatase


Domain annotation for each model (and alignments):
>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   2.1e-34   4.7e-31       2     161 ..      22     182 ..      21     184 .. 0.97

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 2.1e-34
                 BEBEEB-------HHHHHHHH---EEEE--SSHHHHHHHHHTT...EEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHHHH---EEEE--EB--HHHHH---EBEEEB--HHHHHHHHHHHHHHSESEEEE-- CS
  PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtkekveelvaeg...akaaesieelvasldvvilmvkagkavdeviegellealekgdilidgstsspedtrelakelkekglrfldapVSGGeegAekGtLsimvGGeeeafervkpileaigakvthviG 161
                 +++gfiG+G+MG+  ++ llkag + +++nr+ +k++++ +e    +++a+++ e+++++++ + m+++ +a ++v  + +l+ +++g+ ++d+ t  pe  + + +++ +kg +fl+apVSG ++ Ae+G+L +++GG++  ++++++ l+ +g+  + + G
  MMETSP0890-20130614|7077_1  22 ETLGFIGIGIMGKGQVQCLLKAGRKCVIWNRDLSKANRIKEEYpdlVTVASTAGEVIEKCEITFSMLSTIEASEAVFPS-VLDSVSSGKAIVDCATLTPERMIVMRDAIVAKGGSFLEAPVSGSKVPAETGQLIFLCGGDAYLYQKIESELNIMGKAHF-IFG 182
                 689*************************************9988999********************************.***************************************************************************9877.446 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.2e-11     5e-08       2      94 ..      24     115 ..      23     116 .. 0.86
   2 ?   -3.6   0.1         6   1.4e+04       8      22 ..     199     213 ..     198     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 2.2e-11
  PF03807.12   2 igiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelg..vkvtavsneeaaeeadvvilavkpedv.eevlael.kealkgklvisvl 94 
                 +g+iG G +g++ ++ l++ag   ++ +i  +r+ +ka+ ++ee+   v+v + ++ e++e++++ + ++ +  + e+v  ++ ++ + gk +++++
  MMETSP0890-20130614|7077_1  24 LGFIGIGIMGKGQVQCLLKAG---RKCVIW-NRDLSKANRIKEEYPdlVTVAS-TAGEVIEKCEITFSMLSTIEAsEAVFPSVlDSVSSGKAIVDCA 115
                 8********************...999966.***************8666555.999**********99877555055556669999********96 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 6
  PF03807.12   8 Gnigealakglaaag 22 
                 Gn+  al +gla a+
  MMETSP0890-20130614|7077_1 199 GNMLVALGEGLALAD 213
                 889899999998887 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.1e-08   9.3e-05      13      85 ..      22      90 ..      13     127 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.1e-08
                -EEEEE----HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEEE-S-- CS
  PF01488.15 13 kkvlviGAGemarlvakhLlekgvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvisatsa 85
                 +   iG G m++  ++ Ll+ g k  vi NR+ +ka+++ ee+++    ++  + + e+++++++ +s  s 
  MMETSP0890-20130614|7077_1 22 ETLGFIGIGIMGKGQVQCLLKAGRK-CVIWNRDLSKANRIKEEYPDL---VTVASTAGEVIEKCEITFSMLST 90
                56678***************99988.******************555...44445555888888888876554 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.036       3      61 ..      25      82 ..      23     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.6e-05
                EEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH.....HHHHH CS
  PF02737.13  3 aVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklkeeeve 61
                + +G G+mG+g  + +++ag + v+++++ +++++ +e+  + +  +  +g++  e+ e
  MMETSP0890-20130614|7077_1 25 GFIGIGIMGKGQVQCLLKAGRKCVIWNRDLSKANRIKEEYPDLVTVASTAGEVI-EKCE 82
                679******************************999999888666666666555.4444 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.037      35     101 ..      20      83 ..       3     115 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
                 GGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH---EE--CCCCCCC-SEEEE---- CS
  PF02826.14  35 sgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelgaevvsleellaesDvvslhlpl 101
                  ++t+G iG+G +G+   ++l + g k ++++r  +k++   + + e+ +l ++++++  v+  + +
  MMETSP0890-20130614|7077_1  20 MNETLGFIGIGIMGKGQVQCLLKAGRKCVIWNRDLSKAN---RIKEEYPDLVTVASTAGEVIEKCEI 83 
                 689*******************************88666...3333444444444444444333333 PP

>> PF04029.9  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.4e-05      0.17      32      77 ..      39      84 ..      36      97 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.4e-05
   PF04029.9 32 taLanGakeiipvedieealelkkklekvllaGErggkkiegfdlg 77
                 +L++G k++i  +d+++a ++k+++++ ++++   g+ ie ++++
  MMETSP0890-20130614|7077_1 39 CLLKAGRKCVIWNRDLSKANRIKEEYPDLVTVASTAGEVIEKCEIT 84
                689***************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.89
# Mc/sec: 834.69
//
Query:       MMETSP0890-20130614|7081_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   52.8   0.0    2.5e-07   29.9   0.0    2.4  2  PF13475.1 Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.9e-11   2.5e-07       8      43 ..       2      37 ..       1      41 [. 0.93
   2 !   21.1   0.0     1e-08   0.00014       1      37 [.      40      82 ..      40      87 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.9e-11
   PF13475.1  8 avkkngsalkylseeLknDkeivlkAvkqngsalsy 43
                av++ g al+++ +eLk+D eivl+Av ++g al+y
  MMETSP0890-20130614|7081_1  2 AVRSEGHALQHAADELKSDYEIVLEAVSNYGGALEY 37
                789999*************************99998 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1e-08
   PF13475.1  1 DrEivleavkkngs......alkylseeLknDkeivlkAvkqn 37
                D Eivl a++++ +      +l+++  eL+ D ++vl+Av++n
  MMETSP0890-20130614|7081_1 40 DYEIVLTALQSDENegnvenSLEFAAVELTYDPDFVLAAVRRN 82
                67**********88888999*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 369.96
//
Query:       MMETSP0890-20130614|7080_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-10   38.9   0.2    5.3e-07   29.3   0.0    2.7  2  PF12550.3 Transcriptional activator of glycolytic enzymes


Domain annotation for each model (and alignments):
>> PF12550.3  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   3.9e-11   5.3e-07       3      52 ..     421     470 ..     419     472 .. 0.86
   2 !    6.9   0.0   0.00036       4.9      47      79 ..     492     523 ..     483     525 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 3.9e-11
   PF12550.3   3 kmsrdiktVedlwrEwteglngqpsiksleekygsrWrrdskerktfsrR 52 
                  ++++++t++++++E+ +glng p++kslee yg + r+   ++  fs R
  MMETSP0890-20130614|7080_1 421 VLCDKPRTIRQIYTEYKYGLNGGPALKSLEEFYGPSKRNGRGSNPKFSWR 470
                 67899*****************************8888766666666665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00036
   PF12550.3  47 ktfsrRkriidfIerllkkkgiseeeaieilek 79 
                 + ++rR  ++ +I r  ++ g+se  ai+ l++
  MMETSP0890-20130614|7080_1 492 QSYARRADLCHYIDR-EIEGGKSEAAAISALQR 523
                 78*************.************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:01.31
# Mc/sec: 1062.81
//
Query:       MMETSP0890-20130614|7084_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 929.00
//
Query:       MMETSP0890-20130614|7083_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   25.4   8.6    1.1e-05   24.8   6.0    1.3  1  PF13920.1 Zinc finger, C3HC4 type (RING finger)
    0.00029   20.4  11.4    0.00045   19.8   7.9    1.3  1  PF13923.1 Zinc finger, C3HC4 type (RING finger)
     0.0012   18.4  12.0     0.0018   17.8   8.3    1.3  1  PF13639.1 Ring finger domain
  ------ inclusion threshold ------
      0.026   14.1   5.7      0.055   13.0   4.0    1.4  1  PF05290.6 Baculovirus immediate-early protein (IE-0)
        1.1    8.8   4.3       0.47   10.0   0.2    2.0  2  PF10107.4 Endonuclease related to archaeal Holliday junction resolvase


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   6.0     4e-09   1.1e-05       2      47 ..      11      60 ..      10      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4e-09
   PF13920.1  2 kktCvvCler....eadvlllpCgHlclCeeCaerllk.rkkkCpiCrspi 47
                + tC++C+e+    ++++l ++Cg++ +C  C+ r+++ ++  Cp Cr+p+
  MMETSP0890-20130614|7083_1 11 DLTCPLCCEEldlsDQNFLPCKCGYQ-VCMFCWYRIKEnSNGLCPACRTPY 60
                679******766669999999*****.*********878999*******97 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   7.9   1.6e-07   0.00045       2      46 .]      11      58 ..      10      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.6e-07
   PF13923.1  2 rfsCpiCleel..en.pviltpCgHlyCkkCieqwlekskkkCPiCrn 46
                +++Cp+C+eel  ++  +  ++Cg  +C  C++++ e+s+  CP Cr+
  MMETSP0890-20130614|7083_1 11 DLTCPLCCEELdlSDqNFLPCKCGYQVCMFCWYRIKENSNGLCPACRT 58
                789******99553345444667999************999*****96 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   8.3   6.7e-07    0.0018       2      46 .]      13      59 ..      12      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.7e-07
   PF13639.1  2 eCaiCldelse.geevvrlpCgHvfHeeCldewlrss.nsCPlCrkp 46
                +C++C++el+  ++++  ++Cg   +  C  +  ++s + CP Cr+p
  MMETSP0890-20130614|7083_1 13 TCPLCCEELDLsDQNFLPCKCGYQVCMFCWYRIKENSnGLCPACRTP 59
                7********6699*******************9987526******97 PP

>> PF05290.6  Baculovirus immediate-early protein (IE-0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.0     2e-05     0.055      83     134 ..      14      63 ..       6      69 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-05
   PF05290.6  83 cnic.edts.aeerflkPneccGykicnlcyanlwkfstvyPvcPvcktsfkss 134
                 c +c e+   ++++fl P + cGy++c  c+ ++ + s+    cP c+t + ++
  MMETSP0890-20130614|7083_1  14 CPLCcEELDlSDQNFL-PCK-CGYQVCMFCWYRIKENSN--GLCPACRTPYADD 63 
                 5555144441455555.544.8************99987..68******99776 PP

>> PF10107.4  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.25   6.8e+02      16      34 ..      76      94 ..      66     115 .. 0.46
   2 ?   10.0   0.2   0.00017      0.47      40     100 ..     159     219 ..     120     221 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.25
   PF10107.4 16 lqekvekrarelfeqlkka 34
                +++k e++are +++ k++
  MMETSP0890-20130614|7083_1 76 IKNKKERKAREKEKERKEQ 94
                3333333333322222211 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00017
   PF10107.4  40 eaqveeeaeakleewkkkeekeirkdavkksravlkGkvsEqlaPflpefkynPkdarflG 100
                 +a++ ++++++ ++ k+++ + ++ ++ k++ + ++G    q aPf   ++ + ++  ++G
  MMETSP0890-20130614|7083_1 159 QASALQQQSTSQQDTKQQQQQVVQSQSTKMQSSNVAGLCYPQSAPFTDSYQQQQQQQDYIG 219
                 55666777788888888999999***************************99998888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1590  (0.116296); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.98
# Mc/sec: 1161.50
//
Query:       MMETSP0890-20130614|7086_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       547  (0.0400088); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.77
# Mc/sec: 1008.34
//
Query:       MMETSP0890-20130614|7085_1  [L=1254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     1e-135  452.3   2.4   1.6e-135  451.6   1.7    1.3  1  PF04054.10 CCR4-Not complex component, Not1
    1.3e-50  170.7   3.7    3.1e-50  169.5   2.5    1.7  1  PF12842.2  Domain of unknown function (DUF3819)
  ------ inclusion threshold ------
        2.1    5.8   5.0        3.4    5.1   3.5    1.2  1  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF04054.10  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.6   1.7  3.6e-139  1.6e-135       2     378 ..     858    1225 ..     857    1226 .. 0.94

  Alignments for each domain:
  == domain 1    score: 451.6 bits;  conditional E-value: 3.6e-139
  PF04054.10    2 lllelskvekldsleskeldeeilsafaevlhslqPlkvPgFvfaWleLishrlflpklleklpdkkgwelyvkLlidllkFleellkkeelskavkvlYkgtlrillvLlhDfPeFLieyhyelcdaipsnciQLrNliLsafPkkiklpdpfteglkvdrleeikeapkilkdpvadlkkaelkkdvdnylrskpsesllaeilkklllkekeekaglgyekvkvnvklinalvlhvgieavaeiekkskkaefn...tkssalellskLakeldsegrylllnaianqLRYpnshThyfskvilelFksdeaesekediqeqitrvllErlivnkPhpWGllitfieLiknekykfwelpfvksapeieklfeslak 378 
                  ll++l+ ++    l+s++   +++ afa+++h+lqP+++P F+f+WleLishr+flp++l   +++kgw ++++Ll+dl+ Fle++l+  el++a++ lYkgtlr+llvLlhDfPeFL + h ++cd ips+ciQLrNl LsafP++++lpdpft++lkvd l+ei+++p++l++ va+l   +l++ +d+ylr++   s+l e+ +kl++   ++k++   +  +++++l+nalv+h+g+ a+a+ + ks++ + +    +s+ ++++++L+++ld+egrylllnaianqLR+pn hThy+s+vil lF+    es+ + ++eqitrvllErliv++PhpWGllitfieLikn++y fw+++f+++a+eie++fes+a+
  MMETSP0890-20130614|7085_1  858 LLHDLNVPDP--MLDSSNP--RVICAFATCFHALQPSVLPVFAFSWLELISHRMFLPNVLL-IKNQKGWIIMHRLLVDLFVFLEPYLRRIELTDAIRTLYKGTLRVLLVLLHDFPEFLSDFHHSFCDLIPSSCIQLRNLFLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRVLSNCVAALDAFDLRESLDEYLRTRHPISFLLELPRKLTKIAINTKEK---DVSSYEIPLVNALVVHIGTTAIAQLHAKSQAGASAgpiAHSAPMDVFQHLTNNLDAEGRYLLLNAIANQLRFPNQHTHYYSCVILFLFA----ESTDQFVKEQITRVLLERLIVHRPHPWGLLITFIELIKNSRYAFWSHDFTHCASEIERVFESVAR 1225
                  5666664444..4444444..89**************************************.89***********************************************************************************************************************************66699********99998877765...899********************99998886554322267899**********************************************....999***********************************************************997 PP

>> PF12842.2  Domain of unknown function (DUF3819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   2.5   6.9e-54   3.1e-50       3     146 ..     171     317 ..     169     318 .. 0.93

  Alignments for each domain:
  == domain 1    score: 169.5 bits;  conditional E-value: 6.9e-54
   PF12842.2   3 dlkklvkkaleraireiispvversvtiAvitteeLvkkDFalepdeeklrraahlmvrsLagsLalvtckepLreslsnnlrsllesksqst...eeelieeivqilvndNlelacaliekaavekavreieeklaeeielrrrhr 146
                 +l+++ + a++raireii+pvversvtiA+itt+eLv+kDFa e de ++r+aa+lmv++LagsLalvtckepLr+s+ ++lr+ll++++q     +e    + +qi++ +Nl+l++ liekaa+eka+r+++e+l++ +++r++ r
  MMETSP0890-20130614|7085_1 171 ALRRVAPVAVDRAIREIIQPVVERSVTIACITTKELVTKDFAYEIDELRIRKAAQLMVSNLAGSLALVTCKEPLRVSIAKHLRALLSQSQQIApntTEGPKAHTIQICAGENLDLGTMLIEKAATEKAIRDVDEALSATLKTRKQRR 317
                 589999*******************************************************************************99777766453444449*****************************************9876 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.5   0.00075       3.4     241     297 ..     362     417 ..     353     459 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00075
   PF05086.7 241 ntqrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskk 297
                 ++q+++ qp + k++t tttttttttt ++     +a+   + ++nq+k++ +    
  MMETSP0890-20130614|7085_1 362 RHQQTSAQPGS-KTPTATTTTTTTTTTRTPGNGPVQATTVPSAAQNQQKQQRRGGAA 417
                 44555555543.445555555555555555555555555445555555554443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.79u 0.39s 00:00:02.18 Elapsed: 00:00:01.45
# Mc/sec: 2072.44
//
Query:       MMETSP0890-20130614|7087_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-14   52.5   0.0    7.2e-14   52.0   0.0    1.3  1  PF05050.7 Methyltransferase FkbM domain
    3.1e-06   27.6   0.0    5.1e-06   26.9   0.0    1.4  1  PF12847.2 Methyltransferase domain
    9.4e-05   22.0   0.0    0.00016   21.2   0.0    1.4  1  PF13489.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.078   12.4   0.0       0.19   11.2   0.0    1.6  1  PF13847.1 Methyltransferase domain
       0.12   10.9   0.0       0.18   10.3   0.0    1.3  1  PF08003.6 Protein of unknown function (DUF1698)


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   2.6e-17   7.2e-14       1     165 [.     122     304 ..     122     305 .. 0.60

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 2.6e-17
   PF05050.7   1 DvGAniGwssalyslaakcggggrviafEPnpn...nlaklaanl...........tlalgdddgl.velivaavgd.gsallsavgdssgssss........svledrntstievpvvtLDdf.leenisridllKiDvEGaElevLegaeetlkrcqpnii.vEvhefkdfik.............plfeeildfLeelGyr 165
                 D GAn+G    lysl a +++g++v+ +EP+ +    ++ +aa +           +l l  d g+ +e+   a +  g+              +        +     ++  ++++v  L d  +    + i ++K+DvEG El++L+ a  ++++++++   vE+ +    ++             ++ + +l+ L++lGyr
  MMETSP0890-20130614|7087_1 122 DLGANHG----LYSLLA-AAKGAKVWGIEPQTAlssLVQACAAVNgfdhnsfhifrNLILDADPGKtIEFPELAMHSnGEGG------------AasigmptaQAANLPKYAVTTISVSKLADQcFHS--QSIAFMKVDVEGVELPALRSAMPLFQHHKIKHAvVEFGPL--SRWkrlsesgvenngqEHAALLLASLRNLGYR 304
                 89*****....888544.678*********9997774444444323333334444444444444432443333332222222............1333222222222333335555555555443554..59****************8899999*******98**6553..33346678899975554444455555999998 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-09   5.1e-06       3      52 ..     118     164 ..     116     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.9e-09
   PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldlee 52 
                  ++lDlG+++G++sl +a   +gakv g++p+ +  +l ++ a +++  +
  MMETSP0890-20130614|7087_1 118 TTVLDLGANHGLYSLLAAA--KGAKVWGIEPQTALSSLVQACA-AVNGFD 164
                 689****************..************9999999888.433333 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.8e-08   0.00016       7      60 ..      97     159 ..      92     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.8e-08
   PF13489.1   7 reladllerllar....lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.....a 60 
                 +++ dl+  +++r    +++  +vLD+G+++G ++ l a++g++v+g++p  a+++      a
  MMETSP0890-20130614|7087_1  97 KRIIDLVCSVVERahhiENETTTVLDLGANHGLYSLLAAAKGAKVWGIEPQTALSSLvqacaA 159
                 5555555555555554478999****************************8777766655541 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.8e-05      0.19       2      59 ..     115     169 ..     114     177 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.8e-05
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFi 59 
                 +++++vlDlG+  G ++l +a +   gakv Gi+ +    +l +  a+ +gf+  +F+
  MMETSP0890-20130614|7087_1 115 NETTTVLDLGANHGLYSLLAAAK---GAKVWGIEPQTALSSLVQACAAVNGFDHNSFH 169
                 6789*****************66...9*******999888888888888888877776 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.6e-05      0.18     110     170 ..     112     170 ..      37     175 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.6e-05
   PF08003.6 110 hlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahll 170
                 h+ + +  t+ld+G + G +    +++gak v Gi+P++      +a   + g d++++++
  MMETSP0890-20130614|7087_1 112 HI-ENETTTVLDLGANHGLYSLLAAAKGAK-VWGIEPQTALSSLVQACAAVNGFDHNSFHI 170
                 44.557789***********9988777775.89*****99999999999998888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.84
# Mc/sec: 1055.54
//
Query:       MMETSP0890-20130614|7090_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-17   60.6   2.1    9.2e-10   37.9   0.2    3.3  3  PF13414.1  TPR repeat
    1.5e-14   52.5  16.1      0.007   16.0   0.5    5.8  6  PF07719.12 Tetratricopeptide repeat
    7.7e-13   48.0  13.2    4.7e-07   29.5   0.1    3.8  3  PF13424.1  Tetratricopeptide repeat
    9.7e-12   45.1   8.9    1.4e-07   31.8   0.1    3.0  3  PF13432.1  Tetratricopeptide repeat
    7.9e-11   41.5  10.6    0.00015   21.8   0.0    5.2  5  PF13174.1  Tetratricopeptide repeat
    4.6e-10   38.5  20.7     0.0043   16.4   0.9    6.3  7  PF00515.23 Tetratricopeptide repeat
      8e-09   34.5   5.1     0.0085   15.7   0.0    4.7  4  PF13176.1  Tetratricopeptide repeat
    1.4e-08   34.5   8.3    0.00087   19.6   0.0    5.1  5  PF13428.1  Tetratricopeptide repeat
    5.8e-07   28.7  13.7      0.013   15.1   0.0    5.4  5  PF13181.1  Tetratricopeptide repeat
    7.8e-05   22.1   1.6     0.0023   17.3   0.1    2.6  3  PF11817.3  Foie gras liver health family 1
    9.4e-05   22.2   6.5        6.7    7.0   0.0    4.8  4  PF13431.1  Tetratricopeptide repeat
    0.00011   22.1   9.9     0.0086   16.0   0.3    3.2  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0011   19.0   1.0        1.4    9.4   0.0    3.2  3  PF07721.9  Tetratricopeptide repeat
     0.0078   15.3   0.5       0.06   12.5   0.0    2.6  3  PF10516.4  SHNi-TPR
     0.0097   15.7   0.7      0.065   13.0   0.0    2.3  2  PF06657.8  Centrosome microtubule-binding domain of Cep57
  ------ inclusion threshold ------
      0.013   15.2  10.8         12    5.8   0.1    5.3  5  PF13374.1  Tetratricopeptide repeat
       0.35    9.7   3.8        5.3    5.8   0.6    2.1  2  PF01544.13 CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.5    0.0011      0.87      16      66 ..      79     144 ..      75     147 .. 0.84
   2 !   37.9   0.2   1.1e-12   9.2e-10       8      66 ..     157     220 ..     149     223 .. 0.92
   3 !   29.7   0.1     4e-10   3.2e-07       5      67 ..     194     254 ..     191     256 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0011
   PF13414.1  16 egdydeAieayekAleldpnnae................lyynlAlaylklgkdyeeAledyekAle 66 
                 e+d d+A+++ ++A++ ++   +                +++nlA+ y   g + eeA+++y+  ++
  MMETSP0890-20130614|7090_1  79 EKDVDQALKFAKEAVKFEKTLSKqkqmqniddaldltyaVLFNLAKRYDAAG-MIEEARQNYQILIK 144
                 68999**********997554444556677778899999*************.9********98776 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 1.1e-12
   PF13414.1   8 elGnalfkegdydeAieayekAl.eldpnnae.....lyynlAlaylklgkdyeeAledyekAle 66 
                 +l+n  f +++y eAi+ y+kA+ ++dp++ +     ++ n+++a+ +lg ++++A++ y+ +l+
  MMETSP0890-20130614|7090_1 157 NLANLNFAQNKYLEAIRDYRKAYdQIDPSSNKrmrtaILRNIGHAFVRLG-QFKDAIQRYDTVLA 220
                 89*********************559**998899999*************.6*********9997 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 4e-10
   PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  l++ G a+ ++g++++Ai+ y+  l+  p +  + +nlAl+y+ lg d +  l+++++ ++l
  MMETSP0890-20130614|7090_1 194 ILRNIGHAFVRLGQFKDAIQRYDTVLATLP-DVHAAFNLALSYFALG-DSDNSLKALQRLIAL 254
                 6899**************************.688999**********.68999****999887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.068        54      15      31 ..      80      96 ..      77      99 .. 0.85
   2 !   10.8   0.3   0.00041      0.33       3      27 ..     118     142 ..     116     147 .. 0.89
   3 ?   -0.9   0.0       2.3   1.9e+03      10      20 ..     141     151 ..     140     151 .. 0.87
   4 !   16.0   0.5   8.8e-06     0.007       4      28 ..     155     179 ..     152     181 .. 0.91
   5 !   12.7   0.0    0.0001     0.082       3      32 ..     194     223 ..     192     225 .. 0.90
   6 !   16.0   0.1   8.8e-06    0.0071       3      30 ..     227     254 ..     225     254 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.068
                T-HHHHHHHHHHHHHH- CS
  PF07719.12 15 gdyeeAleafekAleld 31
                +d ++Al++ ++A++ +
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAVKFE 96
                799**********9976 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                 +l+nl++ y ++g  eeA++ ++  
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEARQNYQIL 142
                 79*******************9965 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 2.3
                 HHHHTT-HHHH CS
  PF07719.12  10 ayyklgdyeeA 20 
                 +++k++++++A
  MMETSP0890-20130614|7090_1 141 ILIKNKNFQQA 151
                 7899****998 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 8.8e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   4 lynlGlayyklgdyeeAleafekAl 28 
                 + nl+++ +++++y eA+++++kA 
  MMETSP0890-20130614|7090_1 155 NVNLANLNFAQNKYLEAIRDYRKAY 179
                 679********************96 PP

  == domain 5    score: 12.7 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 +l n+G a  +lg++++A++ ++ +l+  P
  MMETSP0890-20130614|7090_1 194 ILRNIGHAFVRLGQFKDAIQRYDTVLATLP 223
                 689********************9998777 PP

  == domain 6    score: 16.0 bits;  conditional E-value: 8.8e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                 a +nl+l+y++lgd +  l+a+++ ++l
  MMETSP0890-20130614|7090_1 227 AAFNLALSYFALGDSDNSLKALQRLIAL 254
                 779*********************9987 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.096        77      19      35 ..      80      96 ..      67     103 .. 0.72
   2 !   18.4   3.6   1.7e-06    0.0013       4      74 ..     115     180 ..     111     183 .. 0.87
   3 !   29.5   0.1   5.8e-10   4.7e-07       6      75 ..     193     254 ..     183     255 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.096
   PF13424.1 19 gdydeAlelyekalell 35
                +d d+Al++ ++a++  
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAVKFE 96
                56677777777766654 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 1.7e-06
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                 + ++l+nla  + + g+ +eA++ y+  ++       +  +  r+  nlanl  a+++y eA++ ++kA++
  MMETSP0890-20130614|7090_1 115 TYAVLFNLAKRYDAAGMIEEARQNYQILIKNK-----NFQQAGRLNVNLANLNFAQNKYLEAIRDYRKAYD 180
                 67899*****************9999988874.....2235568899**********************98 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 5.8e-10
   PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 +il n+++++ rlg++++A++ y ++l+ l       pd + a +nla  y algd d +l+ l++ +++
  MMETSP0890-20130614|7090_1 193 AILRNIGHAFVRLGQFKDAIQRYDTVLATL-------PD-VHAAFNLALSYFALGDSDNSLKALQRLIAL 254
                 7899***********************887.......77.6799**********************9875 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.8   2.2e+03      11      24 ..      80      93 ..      79      95 .. 0.66
   2 !   16.7   0.8   9.3e-06    0.0075       2      63 ..     121     185 ..     120     187 .. 0.89
   3 !   31.8   0.1   1.7e-10   1.4e-07       4      59 ..     199     253 ..     197     258 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.8
   PF13432.1 11 GdydeAlaaleaal 24
                +d+d+Al+  ++a+
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAV 93
                56777777777666 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 9.3e-06
   PF13432.1   2 alArallraGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraal.alaPd 63 
                  lA+ + +aG  +eA++ ++ ++++    +a +   +la + ++++++ eA++ +r+a+ +++P+
  MMETSP0890-20130614|7090_1 121 NLAKRYDAAGMIEEARQNYQILIKNKnfQQAGRLNVNLANLNFAQNKYLEAIRDYRKAYdQIDPS 185
                 68999999999********99999999999**********************6666666588887 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 1.7e-10
   PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraala 59 
                 ++a++r+G++++A++ ++++la  P ++ a ++la ++++lg+ d ++++l++++a
  MMETSP0890-20130614|7090_1 199 GHAFVRLGQFKDAIQRYDTVLATLP-DVHAAFNLALSYFALGDSDNSLKALQRLIA 253
                 899**********************.9*********************99999864 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.3   2.6e+03      14      27 ..      80      93 ..      71      94 .. 0.77
   2 !   12.4   0.2   0.00019      0.15       2      29 ..     118     145 ..     117     145 .. 0.95
   3 ?    2.6   0.0      0.25     2e+02       5      28 ..     157     180 ..     156     186 .. 0.84
   4 !    7.5   0.0     0.007       5.6       4      32 ..     196     224 ..     193     224 .. 0.88
   5 !   21.8   0.0   1.9e-07   0.00015       2      28 ..     227     253 ..     226     255 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3.3
                HHHHHHHHHHHHHH CS
   PF13174.1 14 gdtdeAlealerli 27
                +d d+Al+  ++ +
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAV 93
                5999**99988876 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlike 29 
                 +l++la+ y+++g+ +eA++ ++ lik+
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEARQNYQILIKN 145
                 69*********99*************96 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                 +la + ++++++ eA++ +++  +
  MMETSP0890-20130614|7090_1 157 NLANLNFAQNKYLEAIRDYRKAYD 180
                 7999999999999****9998755 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.007
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   4 yklalsyyklgdtdeAlealerlikeyPd 32 
                  +++ ++ +lg++ +A++ ++ +++  Pd
  MMETSP0890-20130614|7090_1 196 RNIGHAFVRLGQFKDAIQRYDTVLATLPD 224
                 58999****99************987775 PP

  == domain 5    score: 21.8 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                 A ++lalsy++lgd+d++l+al+rli+
  MMETSP0890-20130614|7090_1 227 AAFNLALSYFALGDSDNSLKALQRLIA 253
                 88*********99************96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.16   1.3e+02      15      30 ..      80      95 ..      79      98 .. 0.86
   2 ?   -1.0   0.1       1.8   1.4e+03      12      22 ..     103     113 ..     102     114 .. 0.85
   3 ?    4.0   0.2     0.047        38       3      25 ..     118     140 ..     116     143 .. 0.90
   4 ?   -1.3   0.0       2.2   1.7e+03      10      20 ..     141     151 ..     140     151 .. 0.85
   5 !   16.4   0.9   5.4e-06    0.0043       6      27 ..     157     178 ..     155     180 .. 0.96
   6 !   12.3   0.0   0.00011     0.085       4      29 ..     195     220 ..     193     224 .. 0.84
   7 !   12.6   0.1   8.9e-05     0.071       5      28 ..     229     252 ..     227     254 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.16
                T-HHHHHHHHHHHHHH CS
  PF00515.23 15 gkydeAleyyekALel 30
                ++ d+Al++ ++A++ 
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAVKF 95
                688**********986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.8
                 HHTT-HHHHHH CS
  PF00515.23  12 lklgkydeAle 22 
                  ++++ d+Al+
  MMETSP0890-20130614|7090_1 103 KQMQNIDDALD 113
                 5899*****97 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHTT-HHHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                 +l+nl+  y   g+ +eA + y+
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEARQNYQ 140
                 78999999************997 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 2.2
                 HHHHTT-HHHH CS
  PF00515.23  10 aylklgkydeA 20 
                 ++ k++++++A
  MMETSP0890-20130614|7090_1 141 ILIKNKNFQQA 151
                 67899***998 PP

  == domain 5    score: 16.4 bits;  conditional E-value: 5.4e-06
                 HHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   6 nlGnaylklgkydeAleyyekA 27 
                 nl+n+ + ++ky eA+ +y+kA
  MMETSP0890-20130614|7090_1 157 NLANLNFAQNKYLEAIRDYRKA 178
                 9********************9 PP

  == domain 6    score: 12.3 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekALe 29 
                 l n+G+a+ +lg++++A++ y+ +L 
  MMETSP0890-20130614|7090_1 195 LRNIGHAFVRLGQFKDAIQRYDTVLA 220
                 67****************97777776 PP

  == domain 7    score: 12.6 bits;  conditional E-value: 8.9e-05
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   5 ynlGnaylklgkydeAleyyekAL 28 
                 +nl++ y+ lg+ d  l++ ++ +
  MMETSP0890-20130614|7090_1 229 FNLALSYFALGDSDNSLKALQRLI 252
                 7*******************9966 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.14   1.1e+02       2      24 ..     119     141 ..     118     150 .. 0.87
   2 ?    4.6   0.0     0.036        29       3      26 ..     156     179 ..     154     189 .. 0.83
   3 !   15.7   0.0   1.1e-05    0.0085       2      27 ..     195     220 ..     194     226 .. 0.85
   4 !   10.2   0.1   0.00059      0.48       3      30 ..     229     256 ..     227     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.14
   PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                 l+nLa+ y + g  e+A + y+ 
  MMETSP0890-20130614|7090_1 119 LFNLAKRYDAAGMIEEARQNYQI 141
                 89***************999987 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.036
   PF13176.1   3 lnLarlysrlgdyekAielyeraL 26 
                 +nLa+l +++++y +Ai+ y++a 
  MMETSP0890-20130614|7090_1 156 VNLANLNFAQNKYLEAIRDYRKAY 179
                 69******************9955 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 1.1e-05
   PF13176.1   2 llnLarlysrlgdyekAielyeraLa 27 
                 l n++++++rlg++++Ai+ y   La
  MMETSP0890-20130614|7090_1 195 LRNIGHAFVRLGQFKDAIQRYDTVLA 220
                 78*******************99554 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00059
   PF13176.1   3 lnLarlysrlgdyekAielyeraLaltk 30 
                 +nLa  y++lgd ++ +++++r++al +
  MMETSP0890-20130614|7090_1 229 FNLALSYFALGDSDNSLKALQRLIALPY 256
                 69********************989875 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       3.3   2.6e+03      15      29 ..      80      94 ..      77     100 .. 0.84
   2 ?    4.6   0.1     0.073        59       3      29 ..     118     144 ..     116     154 .. 0.85
   3 ?    1.7   0.1      0.59   4.7e+02       6      32 ..     157     184 ..     150     193 .. 0.81
   4 !   19.6   0.0   1.1e-06   0.00087       3      37 ..     194     228 ..     192     233 .. 0.82
   5 !   11.1   0.1   0.00058      0.47       3      30 ..     227     254 ..     225     262 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 3.3
   PF13428.1 15 GdpdeAiallrrala 29
                 d+d+A++ +++a++
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAVK 94
                5899****9999986 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.073
   PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                 +l  la  + a+G  +eA++ ++ +++
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEARQNYQILIK 144
                 57789**************98887765 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.59
   PF13428.1   6 alarallalGdpdeAiallrralal.aP 32 
                  la++ +a++ + eAi+ +r+a  + +P
  MMETSP0890-20130614|7090_1 157 NLANLNFAQNKYLEAIRDYRKAYDQiDP 184
                 68999999999999***99999765255 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.1e-06
   PF13428.1   3 allalarallalGdpdeAiallrralalaPddaea 37 
                  l+  ++a+ +lG++++Ai+ ++ +la+ Pd  +a
  MMETSP0890-20130614|7090_1 194 ILRNIGHAFVRLGQFKDAIQRYDTVLATLPDVHAA 228
                 567889*************************5443 PP

  == domain 5    score: 11.1 bits;  conditional E-value: 0.00058
   PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                 a   la  ++alGd d  +++l+r++al
  MMETSP0890-20130614|7090_1 227 AAFNLALSYFALGDSDNSLKALQRLIAL 254
                 66789********************984 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.15   1.2e+02      15      31 ..      80      96 ..      79      99 .. 0.88
   2 ?    5.1   0.5     0.025        20       2      32 ..     117     147 ..     116     150 .. 0.88
   3 ?    4.3   0.4     0.044        35       3      28 ..     154     179 ..     152     180 .. 0.90
   4 !    6.6   0.0    0.0085       6.8       2      22 ..     193     213 ..     192     220 .. 0.89
   5 !   15.1   0.0   1.6e-05     0.013       2      31 ..     226     255 ..     225     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.15
                T-HHHHHHHHH---HHH CS
   PF13181.1 15 GdydkAkeylekalelk 31
                +d d+A+++ ++a++  
  MMETSP0890-20130614|7090_1 80 KDVDQALKFAKEAVKFE 96
                789***********976 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.025
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                 ++++nl++ Y   G +++A + ++  ++ k+
  MMETSP0890-20130614|7090_1 117 AVLFNLAKRYDAAGMIEEARQNYQILIKNKN 147
                 6899*******************98887665 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.044
                 -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1   3 ayynlGdiYrqlGdydkAkeylekal 28 
                 +  nl+ + +  ++y +A+  ++ka 
  MMETSP0890-20130614|7090_1 154 LNVNLANLNFAQNKYLEAIRDYRKAY 179
                 6789********************97 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0085
                 --TTT---HHHHTT-HHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAke 22 
                 ++++n+G+++  lG+++ A++
  MMETSP0890-20130614|7090_1 193 AILRNIGHAFVRLGQFKDAIQ 213
                 5799*************9986 PP

  == domain 5    score: 15.1 bits;  conditional E-value: 1.6e-05
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                 +a +nl++ Y+ lGd d+++++l++ + l 
  MMETSP0890-20130614|7090_1 226 HAAFNLALSYFALGDSDNSLKALQRLIALP 255
                 5779********************998775 PP

>> PF11817.3  Foie gras liver health family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.3     1e+03     176     176 ..     108     108 ..      38     150 .. 0.58
   2 !   17.3   0.1   2.9e-06    0.0023     155     205 ..     169     219 ..     122     226 .. 0.86
   3 ?    3.0   0.0     0.066        53     181     210 ..     228     258 ..     224     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.3
   PF11817.3 176 m 176
                 +
  MMETSP0890-20130614|7090_1 108 I 108
                 2 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.9e-06
   PF11817.3 155 keiielLekaleeFkkrkqtRmaeelslemAeeylrlgdwskAlelldpla 205
                  e+i  ++ka+ +    + +Rm+ ++  +++  ++rlg++++A++ +d++ 
  MMETSP0890-20130614|7090_1 169 LEAIRDYRKAYDQIDPSSNKRMRTAILRNIGHAFVRLGQFKDAIQRYDTVL 219
                 5677778999999999999*****************************994 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.066
   PF11817.3 181 slemAeeylrlgdwskAlelldpl.alsyRk 210
                 ++++A  y+ lgd +++l+ l++l al y k
  MMETSP0890-20130614|7090_1 228 AFNLALSYFALGDSDNSLKALQRLiALPYHK 258
                 7899******************998877765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1      0.03        24      15      34 .]     118     137 ..     116     137 .. 0.94
   2 ?    3.6   0.2       0.1        83      17      33 ..     156     172 ..     152     173 .. 0.89
   3 ?    6.2   0.0     0.015        12      14      34 .]     193     213 ..     175     213 .. 0.83
   4 !    7.0   0.0    0.0084       6.7      13      32 ..     225     244 ..     223     249 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.03
   PF13431.1  15 aynnLAelllnnGdleeAeq 34 
                 +++nLA+ + ++G  eeA+q
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEARQ 137
                 79****************98 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.1
   PF13431.1  17 nnLAelllnnGdleeAe 33 
                  nLA+l ++++++ eA+
  MMETSP0890-20130614|7090_1 156 VNLANLNFAQNKYLEAI 172
                 59***********9997 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.015
   PF13431.1  14 daynnLAelllnnGdleeAeq 34 
                   ++n + ++ ++G++++A+q
  MMETSP0890-20130614|7090_1 193 AILRNIGHAFVRLGQFKDAIQ 213
                 6789***************98 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0084
   PF13431.1  13 adaynnLAelllnnGdleeA 32 
                 + a +nLA+ ++++Gd++ +
  MMETSP0890-20130614|7090_1 225 VHAAFNLALSYFALGDSDNS 244
                 56789***********9944 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   4.2    0.0053       4.2       5      83 ..      82     177 ..      79     178 .. 0.66
   2 !   16.0   0.3   1.1e-05    0.0086       8      81 ..     135     215 ..     130     218 .. 0.69
   3 !   13.4   0.1     7e-05     0.056       3      51 ..     206     257 ..     204     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHCCC-ST.......-H.HHHCHHHHHHHHHH---HHHH..HHHHHC......TSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHHH CS
   PF12895.2   5 yknAlflaekllaespk.......dp.edaylyalAlclylngeykrA..yellrk......leldssslgcryll.ArcllklgkydeAiavLek 83 
                  ++Al++a ++++ +++       ++ +da  +++A  + l+++y++A  +e  r+      ++ + +++g   +  A   ++++ky eAi+ + k
  MMETSP0890-20130614|7090_1  82 VDQALKFAKEAVKFEKTlskqkqmQNiDDALDLTYAVLFNLAKRYDAAgmIEEARQnyqiliKNKNFQQAGRLNVNlANLNFAQNKYLEAIRDYRK 177
                 57778888888877777666655633466644445666666666655555555555666687777777767776766**************98776 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC........TSHCHCB..HHHHHHHHHHHHHTT-HHHHCCCH CS
   PF12895.2   8 AlflaekllaespkdpedaylyalAlclylngeykrAyellrk........leldsss..lgcryllArcllklgkydeAiavL 81 
                 A   ++ l++  ++++     ++lA+  + +++y +A+  +rk            ++    ++   ++++++ lg++++Ai+ +
  MMETSP0890-20130614|7090_1 135 ARQNYQILIKNKNFQQAGRLNVNLANLNFAQNKYLEAIRDYRKaydqidpsS---NKRmrTAILRNIGHAFVRLGQFKDAIQRY 215
                 555566666666543333355678******************9*96664322...2332235555678*************976 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 7e-05
                 T-HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC......T CS
   PF12895.2   3 hnyknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk......l 51 
                 +++k+A+  ++ +la+ p  + ++a+ +  Al+++ +g+ +  +++l++      +
  MMETSP0890-20130614|7090_1 206 GQFKDAIQRYDTVLATLP--DvHAAFNL--ALSYFALGDSDNSLKALQRlialpyH 257
                 689*************99..33777766..****************9887665442 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.013        11       3      22 ..     118     137 ..     116     137 .. 0.92
   2 ?   -1.9   0.0       7.8   6.3e+03      10      20 ..     201     211 ..     199     216 .. 0.76
   3 !    9.4   0.0    0.0017       1.4       2      18 ..     226     242 ..     225     249 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.013
                 HH---HHHHHH-------HH CS
   PF07721.9   3 allaLArallalGdldeAra 22 
                 +l++LA  + a+G  +eAr+
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEARQ 137
                 789***************96 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 7.8
                 HHHH------- CS
   PF07721.9  10 allalGdldeA 20 
                 a  +lG++ +A
  MMETSP0890-20130614|7090_1 201 AFVRLGQFKDA 211
                 66799999998 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0017
                 HHH---HHHHHH----- CS
   PF07721.9   2 rallaLArallalGdld 18 
                 +a+++LA  ++alGd+d
  MMETSP0890-20130614|7090_1 226 HAAFNLALSYFALGDSD 242
                 899************97 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.2   4.2e+03      14      20 ..     145     151 ..     143     151 .. 0.77
   2 !   12.5   0.0   7.5e-05      0.06       7      27 ..     158     178 ..     156     178 .. 0.95
   3 ?   -1.2   0.0       1.4   1.1e+03      16      22 ..     207     213 ..     206     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.2
   PF10516.4  14 nEnFpqA 20 
                 n nF qA
  MMETSP0890-20130614|7090_1 145 NKNFQQA 151
                 6699998 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 7.5e-05
   PF10516.4   7 LGEiSlEnEnFpqAveDlrka 27 
                 L+++++ ++++ +A+ D+rka
  MMETSP0890-20130614|7090_1 158 LANLNFAQNKYLEAIRDYRKA 178
                 99*****************98 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.4
   PF10516.4  16 nFpqAve 22 
                 +F++A++
  MMETSP0890-20130614|7090_1 207 QFKDAIQ 213
                 8****98 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4       1.1   8.7e+02      52      70 ..      51      69 ..      44      75 .. 0.72
   2 !   13.0   0.0   8.1e-05     0.065      36      76 ..     175     215 ..     171     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.1
   PF06657.8 52 rkeLaqeleellkrlEaKa 70
                ++ +++  ee++k lEaK 
  MMETSP0890-20130614|7090_1 51 KNVIEKTPEEKMKDLEAKV 69
                5666777788888888885 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 8.1e-05
   PF06657.8  36 ladelkkldaslskrkrkeLaqeleellkrlEaKadqIykL 76 
                 +++++ ++d+s++kr r+ + +++ +   rl + +d I ++
  MMETSP0890-20130614|7090_1 175 YRKAYDQIDPSSNKRMRTAILRNIGHAFVRLGQFKDAIQRY 215
                 5667*******************999999998888887765 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.65   5.2e+02      17      34 ..      81      98 ..      79     101 .. 0.83
   2 ?    3.2   0.1       0.1        81      10      27 ..     118     135 ..     115     141 .. 0.65
   3 ?    2.3   0.3      0.19   1.6e+02       7      23 ..     157     173 ..     156     179 .. 0.79
   4 ?    5.4   0.0      0.02        16       4      30 ..     194     220 ..     192     222 .. 0.88
   5 ?    5.8   0.1     0.015        12       7      28 ..     230     251 ..     226     254 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.65
   PF13374.1 17 ryeeAlaleeealairrr 34
                + ++Al+++ ea+   + 
  MMETSP0890-20130614|7090_1 81 DVDQALKFAKEAVKFEKT 98
                789********9987765 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.1
   PF13374.1  10 lalrargryeeAlaleee 27 
                 ++++  +ry++A  +ee+
  MMETSP0890-20130614|7090_1 118 VLFNLAKRYDAAGMIEEA 135
                 344444888888777776 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.19
   PF13374.1   7 nLAlalrargryeeAla 23 
                 nLA++ +a+++y eA +
  MMETSP0890-20130614|7090_1 157 NLANLNFAQNKYLEAIR 173
                 99999999999988754 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.02
   PF13374.1   4 alnnLAlalrargryeeAlaleeeala 30 
                  l n++ a+ ++g++ +A + +  +la
  MMETSP0890-20130614|7090_1 194 ILRNIGHAFVRLGQFKDAIQRYDTVLA 220
                 689***************998888887 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.015
   PF13374.1   7 nLAlalrargryeeAlaleeea 28 
                 nLAl ++a+g+ +  l+ +++ 
  MMETSP0890-20130614|7090_1 230 NLALSYFALGDSDNSLKALQRL 251
                 9**********99999888876 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.6    0.0066       5.3     131     176 ..      59     110 ..      53     145 .. 0.76
   2 ?    5.2   0.2      0.01         8     100     177 ..     145     222 ..     124     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0066
  PF01544.13 131 eeeldeledel....edetkkellreilqlrrelvrlrrallplrdvlk..r 176
                 ee++++le ++    e++  ++++++ l + +e+v++++ l+ ++++ +  +
  MMETSP0890-20130614|7090_1  59 EEKMKDLEAKVhtllEKSACEKDVDQALKFAKEAVKFEKTLSKQKQMQNidD 110
                 688999999999999*******************************996552 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.01
  PF01544.13 100 kegekpkspgellyelldeivdryfeilekleeeldeledeledetkkellreilqlrrelvrlrrallplrdvlkrl 177
                 +++ ++ +   + ++ l+   ++y+e+++++++  d+++   +++ +  +lr+i     +l ++++a+     vl +l
  MMETSP0890-20130614|7090_1 145 NKNFQQAGRLNVNLANLNFAQNKYLEAIRDYRKAYDQIDPSSNKRMRTAILRNIGHAFVRLGQFKDAIQRYDTVLATL 222
                 55555666666666777888899*********************************99*********99999999544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       956  (0.0699239); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:01.00
# Mc/sec: 644.62
//
Query:       MMETSP0890-20130614|7088_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-71  240.7   0.5    2.2e-71  240.0   0.3    1.3  1  PF08752.5  Coatomer gamma subunit appendage domain
      7e-62  209.3   1.6    9.8e-62  208.8   1.1    1.2  1  PF01602.15 Adaptin N terminal region
    7.5e-09   35.6   4.4     0.0041   17.2   0.0    3.7  3  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.026   14.4  11.1        4.3    7.5   0.1    5.4  6  PF02985.17 HEAT repeat
      0.037   14.5   7.9        2.5    8.6   0.7    3.6  3  PF13513.1  HEAT-like repeat
      0.098   12.6   0.4         46    4.0   0.1    3.4  3  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
        1.3    8.7   6.1        4.8    6.8   0.1    2.7  2  PF12717.2  non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> PF08752.5  Coatomer gamma subunit appendage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.0   0.3   1.1e-74   2.2e-71       5     268 ..     448     710 ..     445     711 .] 0.97

  Alignments for each domain:
  == domain 1    score: 240.0 bits;  conditional E-value: 1.1e-74
   PF08752.5   5 yaeelskipefaelGkllksskpieLTesetEYvVsvvkhif.knhiVLqFnitNTLndqiLenVsvelepeekkleelekipikkLkynepgslyvllekpedeedslsetfsntLkFtvkeidpstgepesdegyeDeYsiedlelqisDfiqplrksnFkalWdeleeeseatetfsLsnvknlqeavkklvellgmqplegtdvveenssshtlklsGkflngekVlvrarlalskekgvtlkitvRseseelselllssl 268
                  ++++  ip++a+lGk++kss++ieLTesetEYvV++vkhi  +nhi L+++itNT +dq+L+nV+v+l+++++ ++++ +ipi+ L+yn++ ++ vll+ ++d    + ++f ++L+F v e + ++ +p+ +eg+ +eY++edle++i+Df++     nF+++W++++ ++e  ++++L +++++ +a++++v +lgmqp+++td+v+ +s++ht+ l+G +l + +V+vra++ ++ + g +lk+ vRs++ ++++l+ +s+
  MMETSP0890-20130614|7088_1 448 ASQQIRGIPQLASLGKIIKSSDKIELTESETEYVVECVKHITdDNHILLECSITNTVSDQLLKNVRVSLNSTDATYTTVLSIPIPVLQYNTSAQTWVLLKPEADAVFGSPAQFVAELEFFVLEGEIDEIDPD-EEGFAEEYPLEDLEISIADFMIHSKITNFREEWESIPRTQEILQKYAL-QFRDMSSAIHAIVMYLGMQPVDNTDSVDPSSTQHTIHLAGIYLANVRVFVRAQVQVDPSAGSVLKMAVRSDELDVAQLVSASI 710
                 678999************************************89*******************************************************999888888899*************99999998.6***********************************************.******************************************************************************99886 PP

>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.8   1.1     5e-65   9.8e-62     169     519 ..       2     352 ..       1     355 [. 0.93

  Alignments for each domain:
  == domain 1    score: 208.8 bits;  conditional E-value: 5e-65
  PF01602.15 169 aAvalleeikkndrlll.kllpklvrrLcnlltelnpwlqvkiiklltrlarqepeersk.....kellesllnllqssnnaVlletvklivelapkne.livlavnaLvrllsskdenlryvaLrnlnkileke.kavqhkdlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvsevadeefksklvkaIgrlaekfatdaewvldvllellslsgeyv.kdeivevirdiiqkvpelhekivekLaellekiespearaaaiWllGeygelventesasdllrslaekfvlesekvklailtalvKlsltspdketqeeliqlvlslatqdssdlelrdRaveylqll 519
                 +A+all+eik++drl++ k++ +l  +  +++++++p++++ +i+++t+  + e ++r       ++ +++l+  l+++++aV++e++k + +l++  +  +  a+ +L+ llss++ +lr++a+r+l+ +++ + +av++++ ++++l +d ++ i+++a+++llk+++es+v++++k++ +++++++de fk  +v aI +l+ k++ +++  + +l ++l+ +g++  k++iv++i  +i   pe +e+++ +L+e++e++e++++ +++++l+G  g+ ++    +++++r ++++++le++++++a+++al+K+    +  + + ++  l+++ +   ++d+e+rdRa+  l++l
  MMETSP0890-20130614|7088_1   2 HALALLHEIKRHDRLAVsKMVIQLGGN-ARVTNMSSPLAICLLIRYITDTLKGENADRILstpagRSAYQFLELSLKHRSDAVIYEAAKSLCSLPSVEDrDLGPAIAVLQLLLSSPKMALRLAAMRTLSAVAMAKpSAVTKCNDDMESLVNDNNRLIATYAITTLLKTGSESSVDRLMKQISSFMNDISDE-FKVVVVHAIQELCLKYPLKHRVLVGFLANFLREEGGFEfKKAIVDAIVLLIDAIPETKESSLFHLCEFIEDCEFTALSTQILFLIGSLGPTTQI---PARYIRFIYNRLILENAIIRAAAINALAKFAMEVS--SLRLSVSVLLRRSLC--DEDDEVRDRAMLSLRIL 352
                 8**************889999999888.7799********************999999334566799**************************99998887799************************************************************************************997.********************************9887656*****************************************************96...*******************************8776..454455555555555..77*********999987 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.0   3.3e-05     0.064       5      85 ..      72     163 ..      68     165 .. 0.72
   2 !   13.8   0.4   2.5e-05     0.048       4      72 ..     108     182 ..     107     203 .. 0.84
   3 !   17.2   0.0   2.1e-06    0.0041      31      88 .]     288     350 ..     255     368 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.3e-05
   PF13646.1   5 laaLekdpdpevraaaieaLgqlgse......ealpaLlelLkdsdpevRraAaeaLgklg..dpealpaLlk...lldddedavvreaaae 85 
                 l++ +k+ ++ v  +a++ L+ l s        a++ L  lL+++  ++R aA + L++++   p+a+    +    l +d+++ + + a+ 
  MMETSP0890-20130614|7088_1  72 LELSLKHRSDAVIYEAAKSLCSLPSVedrdlgPAIAVLQLLLSSPKMALRLAAMRTLSAVAmaKPSAVTKCNDdmeSLVNDNNRLIATYAIT 163
                 555559999************554432334446799999999****************8743378887555443335666777776666665 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.5e-05
   PF13646.1   4 LlaaLekdpdpevraaaieaLg..qlgseea....lpaLlelLkdsdpevRraAaeaLgklgdpealpaLlklld 72 
                  l++L+++p   +r+aa ++L+   ++ ++a     + + +l +d +  +   A+  L k g++++++ L+k + 
  MMETSP0890-20130614|7088_1 108 VLQLLLSSPKMALRLAAMRTLSavAMAKPSAvtkcNDDMESLVNDNNRLIATYAITTLLKTGSESSVDRLMKQIS 182
                 6899999**9************776667755444488999999****************************9654 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 2.1e-06
   PF13646.1  31 ealpaLlelLkdsdpevRraAaeaLgklg.....dpealpaLlklldddedavvreaaaeaLg 88 
                 + +  ++  L  +++ +R+aA++aL+k++      + ++++Ll++   ded+ vr  a+ +L+
  MMETSP0890-20130614|7088_1 288 RYIRFIYNRLILENAIIRAAAINALAKFAmevssLRLSVSVLLRRSLCDEDDEVRDRAMLSLR 350
                 446666666666778888888888888744333246678888888888888888888877774 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   3.4e+03       5      27 ..      72      94 ..      69      96 .. 0.82
   2 ?    5.0   0.2     0.015        29       4      28 ..     108     132 ..     105     133 .. 0.89
   3 ?   -3.7   0.0         7   1.4e+04      17      28 ..     155     166 ..     149     167 .. 0.71
   4 ?    0.2   0.0      0.48   9.4e+02       8      31 .]     240     263 ..     238     263 .. 0.90
   5 ?    4.1   0.1     0.028        54      13      28 ..     301     316 ..     300     319 .. 0.85
   6 ?    7.5   0.1    0.0022       4.3       5      24 ..     330     349 ..     326     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.7
                HHHHHTSSSHHHHHHHHHHHHHH CS
  PF02985.17  5 llkllnDpspeVReaAaeaLgal 27
                l+  l++ s  V + Aa++L+ l
  MMETSP0890-20130614|7088_1 72 LELSLKHRSDAVIYEAAKSLCSL 94
                566788999999999****9986 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.015
                 HHHHHHTSSSHHHHHHHHHHHHHHH CS
  PF02985.17   4 lllkllnDpspeVReaAaeaLgala 28 
                 +l+ ll++p    R aA ++L+a+a
  MMETSP0890-20130614|7088_1 108 VLQLLLSSPKMALRLAAMRTLSAVA 132
                 78899****************9976 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 7
                 HHHHHHHHHHHH CS
  PF02985.17  17 ReaAaeaLgala 28 
                 R  A++a+++l+
  MMETSP0890-20130614|7088_1 155 RLIATYAITTLL 166
                 667777777775 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.48
                 HHTSSSHHHHHHHHHHHHHHHHCS CS
  PF02985.17   8 llnDpspeVReaAaeaLgalaevl 31 
                 ll D  pe +e++++ L++++e +
  MMETSP0890-20130614|7088_1 240 LLIDAIPETKESSLFHLCEFIEDC 263
                 788999**************9976 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.028
                 SHHHHHHHHHHHHHHH CS
  PF02985.17  13 speVReaAaeaLgala 28 
                 ++ +R+aA++aL+ +a
  MMETSP0890-20130614|7088_1 301 NAIIRAAAINALAKFA 316
                 6679********9997 PP

  == domain 6    score: 7.5 bits;  conditional E-value: 0.0022
                 HHHHHTSSSHHHHHHHHHHH CS
  PF02985.17   5 llkllnDpspeVReaAaeaL 24 
                 l + l+D++ eVR+ A  +L
  MMETSP0890-20130614|7088_1 330 LRRSLCDEDDEVRDRAMLSL 349
                 5599**********998887 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.7    0.0013       2.5       6      54 ..      86     130 ..      81     131 .. 0.78
   2 ?   -1.7   0.0       2.3   4.5e+03       3      39 ..     154     187 ..     152     195 .. 0.65
   3 ?    5.4   2.0     0.013        26       3      53 ..     304     350 ..     302     352 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0013
   PF13513.1   6 aAawaLGr.laggeprllepavpellpaLlelLedddd.eVReaAawALgr 54 
                 +Aa+ L + l+ +e+r+l pa+  l  +L+     +++   R aA ++L++
  MMETSP0890-20130614|7088_1  86 EAAKSL-CsLPSVEDRDLGPAIAVLQLLLS-----SPKmALRLAAMRTLSA 130
                 689999.78999999999966665555555.....777466********97 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.3
   PF13513.1   3 vRraAawaLGrlaggeprllepavpellpaLlelLed 39 
                 +R  A +a+ +l+       e  v+ l+++ +  ++d
  MMETSP0890-20130614|7088_1 154 NRLIATYAITTLL---KTGSESSVDRLMKQISSFMND 187
                 6778888885555...455556667777776666655 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.013
   PF13513.1   3 vRraAawaLGr..laggeprllepavpellpaLlelLeddddeVReaAawALg 53 
                 +R+aA++aL+   ++      ++ +   +  +L+  L d+ddeVR+ A ++L 
  MMETSP0890-20130614|7088_1 304 IRAAAINALAKfaME------VSSLRLSVSVLLRRSLCDEDDEVRDRAMLSLR 350
                 799999999764433......344444455555677799999*****999885 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.023        46       7      35 ..     173     202 ..     171     206 .. 0.88
   2 ?    2.3   0.0      0.08   1.6e+02       2      24 ..     379     401 ..     378     409 .. 0.91
   3 ?    2.1   0.0     0.094   1.8e+02       5      35 ..     458     487 ..     456     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.023
                 HHHHHHHHH.TT--.B-HHHHHHHHHHHHH CS
  PF00808.18   7 rvkkImksd.pdarkiskdAkeliaecvee 35 
                  v+++mk+    ++ is++ k+++  +++e
  MMETSP0890-20130614|7088_1 173 SVDRLMKQIsSFMNDISDEFKVVVVHAIQE 202
                 699******888999*******99999887 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.08
                 ---HHHHHHHHHHHTT--.B-HH CS
  PF00808.18   2 eLPiarvkkImksdpdarkiskd 24 
                 +LP+++ ++I+ +++++ +i++d
  MMETSP0890-20130614|7088_1 379 SLPLSTLARILDQSDEMSTIMND 401
                 79************9*****998 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHTT--.B-HHHHHHHHHHHHH CS
  PF00808.18   5 iarvkkImksdpdarkiskdAkeliaecvee 35 
                 +a   kI+ks++ ++ ++++  e++ ecv++
  MMETSP0890-20130614|7088_1 458 LASLGKIIKSSDKIE-LTESETEYVVECVKH 487
                 67889******7776.999999999999987 PP

>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.1     0.028        55       3      95 ..     119     207 ..     117     280 .. 0.67
   2 ?    6.8   0.1    0.0024       4.8       2      49 ..     302     349 ..     281     353 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.028
   PF12717.2   3 liranaiialgDLcvrypnlvdpyleklyacLkdedalvRktallvlshLiledmvKvkgqlflemlkllaDedeeiralAelffsellkkkn 95 
                 ++r  a+++l+  ++  p+ v +  + + +  +d++ l+   a+   ++L++ +     ++l+ ++   ++D ++e + +   +++el +k +
  MMETSP0890-20130614|7088_1 119 ALRLAAMRTLSAVAMAKPSAVTKCNDDMESLVNDNNRLIATYAI---TTLLKTGSESSVDRLMKQISSFMNDISDEFKVVVVHAIQELCLK-Y 207
                 78999999999999999999999999999999999988865555...55555555555555555555555555555555556666666666.3 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0024
   PF12717.2   2 pliranaiialgDLcvrypnlvdpyleklyacLkdedalvRktallvl 49 
                 ++ira ai al  +++ +++l  +    l ++L ded  vR  a+l l
  MMETSP0890-20130614|7088_1 302 AIIRAAAINALAKFAMEVSSLRLSVSVLLRRSLCDEDDEVRDRAMLSL 349
                 455555555555555555555555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.06u 0.43s 00:00:01.49 Elapsed: 00:00:01.32
# Mc/sec: 1290.77
//
Query:       MMETSP0890-20130614|7093_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-24   84.1   0.0    2.2e-23   82.4   0.0    1.9  2  PF01000.21 RNA polymerase Rpb3/RpoA insert domain
    1.8e-17   62.4   0.0      3e-17   61.7   0.0    1.4  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
       0.03   14.6   0.5      0.062   13.5   0.4    1.5  1  PF12838.2  4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> PF01000.21  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.66     3e+03      52      71 ..      21      41 ..       6      66 .. 0.56
   2 !   82.4   0.0   4.8e-27   2.2e-23       1     111 []      81     220 ..      81     220 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.66
                EEEEEEB-SCS.EEGGGEEES CS
  PF01000.21 52 elkLnvkgpge.vtagdlkle 71
                e  L+++g+   v+a+ l +e
  MMETSP0890-20130614|7093_1 21 EGALEKSGSYAdVVASRLSVE 41
                334444444336777776665 PP

  == domain 2    score: 82.4 bits;  conditional E-value: 4.8e-27
                 EEEEEETSSS-HHHHHHHCCCS-B-HCCHCCHCCCCCTTETSSSSTTTTEEEEEEEEB-SCS.........................EEGGGEEES.........STTCEESSSSSEEEEE----BEEEEEEEE---TTCSTTT- CS
  PF01000.21   1 VeieentsvlqDEvvaHrlgliplvsedvleillnlkelieeeegeeeksvelkLnvkgpge.........................vtagdlkle.........dadveivnpdilIakLrkgqeleleakvkkGiGkehakfs 111
                 V+ieent v++DEv++Hrlglipl+++++ +     ++l + e+ ++ +++++ L+v+ p                           vt+++lk+           + +++v++di+I kLr+gq + lea+ +kGiGk+hakfs
  MMETSP0890-20130614|7093_1  81 VYIEENTGVMHDEVLSHRLGLIPLHADPESF-----EDLFDPEDATDVNTIVFGLEVRAPLVpsttisgggtssrpsdapvsaittkVTSAHLKWLpqgdqdsflAEPIRPVYDDIIITKLRPGQAIALEAHGRKGIGKDHAKFS 220
                 8************************999988.....77766789************************************************************999*************************************8 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   6.5e-21     3e-17       2      82 .]      51     336 ..      50     336 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 6.5e-21
                 EEEEES--HHHHHHHHHHHCTT-TTEEEEE............................................................................................................................................-B..S.--EEEEEE....................................................................--S-EEEEEEEEEEE-----HHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................................................................................................xxxxxxxxxxxxxx....................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01193.19   2 gpflegqgitlaNaLRrtLlselpglaita............................................................................................................................................pvtkvnylieedek....................................................................kkkpdkekiileietngsitpkealkkAakilidlll 82 
                 +++l g+++++aNaLRr++++e+p++ai++                                                                                                                                            p   v ++ +++ +                                                                    k k + +++++++et g++ p  ++++A++il+ +++
  MMETSP0890-20130614|7093_1  51 EFDLVGVDVSIANALRRIMIAEVPTMAIETvyieentgvmhdevlshrlgliplhadpesfedlfdpedatdvntivfglevraplvpsttisgggtssrpsdapvsaittkvtsahlkwlpqgdqdsflaepirpvyddiiitklrpgqaialeahgrkgigkdhakfsP---VATASYRMLPsielslpivgdradalkarcplnvfdiedlgderrtavvarprdctmcrecirvidnvpygkdmqqyvKLKRKADHFLFKVETAGQLAPLRIVHDALDILKGKCE 336
                 899*****************************************************************9999999999999999999999999999999999999999999999999999999999999999999888888888888888888888888888888888885...3455666666666777777666666666666666666666666666666666666666666666666665555555545555*****************************9985 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.3e-05     0.062      11      47 ..     250     285 ..     246     285 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
   PF12838.2  11 aCptgaitldeeeeekgkkkvevdpekCtgCgaCvtv 47 
                  Cp +++++++  +e++   v+  p++Ct+C++C+ v
  MMETSP0890-20130614|7093_1 250 RCPLNVFDIEDLGDERR-TAVVARPRDCTMCRECIRV 285
                 5*********9877765.567779**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.49s 00:00:01.05 Elapsed: 00:00:01.00
# Mc/sec: 853.10
//
Query:       MMETSP0890-20130614|7092_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-176  587.3   4.0   1.3e-176  587.0   2.8    1.0  1  PF06068.8  TIP49 C-terminus
      1e-09   38.5   0.3    2.2e-07   30.9   0.0    2.9  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      1e-09   37.6   2.8    7.4e-07   28.3   0.0    3.3  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    4.7e-07   29.8   0.2       0.04   13.9   0.1    2.7  2  PF13401.1  AAA domain
    1.2e-06   27.5   0.2    2.3e-06   26.5   0.2    1.4  1  PF03796.10 DnaB-like helicase C terminal domain
    2.4e-06   27.2   0.1     0.0004   20.0   0.0    2.8  2  PF07728.9  AAA domain (dynein-related subfamily)
    1.4e-05   24.2   1.3    0.00017   20.7   0.4    2.3  2  PF01078.16 Magnesium chelatase, subunit ChlI
    1.7e-05   25.1   0.3    0.00047   20.4   0.2    2.3  1  PF13191.1  AAA ATPase domain
    3.7e-05   23.1   0.1    9.7e-05   21.7   0.0    1.9  2  PF13481.1  AAA domain
    0.00014   22.0   0.5     0.0011   19.1   0.0    2.7  3  PF13238.1  AAA domain
    0.00036   19.9   0.1      0.057   12.7   0.1    2.5  2  PF00158.21 Sigma-54 interaction domain
      0.001   18.6   0.1     0.0032   17.0   0.0    1.9  1  PF13245.1  Part of AAA domain
     0.0015   18.0   0.0     0.0029   17.0   0.0    1.5  1  PF05729.7  NACHT domain
     0.0025   16.8   0.0     0.0068   15.4   0.0    1.8  1  PF06745.8  KaiC
     0.0029   16.6   0.5     0.0066   15.4   0.3    1.5  1  PF06414.7  Zeta toxin
     0.0031   18.1   1.0     0.0066   17.1   0.0    2.2  1  PF13207.1  AAA domain
     0.0049   15.7   0.1      0.011   14.6   0.0    1.6  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0051   15.8   0.5     0.0088   15.0   0.3    1.3  1  PF02277.12 Phosphoribosyltransferase
     0.0057   15.9   0.1      0.012   14.9   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
     0.0064   15.9   0.1      0.015   14.7   0.0    1.6  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
     0.0087   16.2   0.9      0.034   14.3   0.0    2.1  2  PF13476.1  AAA domain
  ------ inclusion threshold ------
      0.019   14.4   0.7      0.048   13.1   0.5    1.8  1  PF13086.1  AAA domain
      0.021   14.3   0.4       0.16   11.3   0.1    2.2  2  PF13604.1  AAA domain
      0.024   14.5   0.1      0.024   14.5   0.1    1.8  1  PF13521.1  AAA domain
      0.025   13.4   0.3        1.4    7.6   0.1    2.3  2  PF05970.9  PIF1-like helicase
      0.034   12.9   0.2      0.066   11.9   0.1    1.4  1  PF01057.12 Parvovirus non-structural protein NS1
      0.043   12.9   0.5       0.11   11.5   0.4    1.7  1  PF02562.11 PhoH-like protein
       0.05   12.9   0.1        3.1    7.0   0.0    2.6  2  PF05707.7  Zonular occludens toxin (Zot)
      0.062   13.3   0.0       0.16   12.0   0.0    1.7  1  PF00910.17 RNA helicase
      0.073   12.3   1.2       0.14   11.3   0.1    1.9  2  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
      0.077   12.5   0.0       0.41   10.1   0.0    2.2  2  PF13177.1  DNA polymerase III, delta subunit
      0.083   12.6   0.0       0.22   11.3   0.0    1.7  1  PF13671.1  AAA domain


Domain annotation for each model (and alignments):
>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.0   2.8  3.1e-179  1.3e-176       1     397 [.       9     407 ..       9     408 .. 0.97

  Alignments for each domain:
  == domain 1    score: 587.0 bits;  conditional E-value: 3.1e-179
   PF06068.8   1 rislhshikgLGldedgeaekeeeglvGqkkaReaagvivelikekklaGravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalRksigvrikeekevleGevvelevee....aenplskekkikevkitlkttkeekklklgskiieelqkekvkegDvivieketGkvkklGrsearakefDi..ekdefvelPkGevekkkevvqevtLhdlDvanarpqdllslllqllkgkkteiteklReeinkkvakyveegkaeivpGvlfiDevhmlDiecfsylnraleselaPivilatnrgiakirGtdiksphGipvDlldRlliiktepytkeeikkilkiRakeeeikldeealdllakigiktsLRyaiqLltpaki 397
                 ri++hshi+gLGld+++e++++++g+vGq+kaR+a+g++ ++ike+k+aGra+LlaG+pgtGkta+a+a++++lged+pf+++++se++sle++kte+ltqa+R+sigvri ee++++eGevve+++ee    +++  +k+   k+ ++tl tt++e+ ++lgs++ie++qke++++gDvi i+k++ +v klGrs+ar++++D+   +++fv++P+Ge++k+kevv++v+Lh++Dv+n+r+q++l+l+     g+++ei++++Re+i+ kv++++eegka ivpGvlf+DevhmlD+ecfs+lnrale +laP++i+atnrgiakirGtd+ksphG+p+D+ldRl+ii+tepy+++e+kkil iRa+ee+++++e+aldll++i+++ts+Ryaiq + +a++
  MMETSP0890-20130614|7092_1   9 RIGAHSHIRGLGLDDTLEPRQVSQGMVGQEKARKAMGIVYKMIKEGKIAGRAILLAGKPGTGKTAIAMALAQALGEDTPFTSMAASEIFSLEMSKTEALTQAFRRSIGVRIMEETDIIEGEVVEIQLEEgvptTDSGSDKKGIEKSGRVTLCTTEMETVYDLGSRMIEAFQKEQISAGDVISIDKASHRVSKLGRSFARSRDYDAmgPTTRFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALF----AGDTGEIKHEVREQIDSKVNEWREEGKATIVPGVLFVDEVHMLDVECFSWLNRALEYDLAPVLIIATNRGIAKIRGTDYKSPHGVPLDMLDRLMIITTEPYSEKELKKILTIRAEEEDVEINEDALDLLTRIAMETSMRYAIQTIMTASL 407
                 799***************************************************************************************************************************997432233333355567889**********************************************************999*****************************************....9**********************************************************************************************************************************************9998875 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   5.2e-10   2.2e-07       1      50 [.      61     111 ..      61     140 .. 0.74
   2 ?    4.6   0.0     0.072        31      42      70 ..     268     300 ..     230     332 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 5.2e-10
                 EEEE-------HHHHHHHHHHCT..HEEEEEECCSSSSST-HHHHHHHHHHH CS
  PF00004.24   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelf 50 
                 +ll G pGtGKT++a a+a+ lg  ++f ++ +se++s  ++++e+ ++  f
  MMETSP0890-20130614|7092_1  61 ILLAGKPGTGKTAIAMALAQALGedTPFTSMAASEIFSLEMSKTEALTQ-AF 111
                 69********************7779***********443333333332.22 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHHHHTS....-SEEEEEETGGGC CS
  PF00004.24  42 sekkirelfkeakeka....kpsilfiDEidal 70 
                   ++i   ++e +e+      p +lf+DE++ l
  MMETSP0890-20130614|7092_1 268 VREQIDSKVNEWREEGkatiVPGVLFVDEVHML 300
                 4444444445544444566789********976 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.7e-09   7.4e-07      14      83 ..      21      91 ..       9     101 .. 0.89
   2 ?    5.6   0.4     0.015       6.4     104     134 ..     291     322 ..     287     401 .. 0.54

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.7e-09
   PF05496.7 14 vekslrPkslee.yigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvelkvtsg 83
                 +++l P+++++  +gqek ++ + i+ +  k+ + a   +ll+G PG Gkt++a+ +a+ lg +   ts 
  MMETSP0890-20130614|7092_1 21 LDDTLEPRQVSQgMVGQEKARKAMGIVYKMIKEGKIAGRAILLAGKPGTGKTAIAMALAQALGEDTPFTSM 91
                578899998865489************************************************99988885 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.015
   PF05496.7 104 vlfideihrlsraveevlysame.dfkldivi 134
                 vlf+de+h l+ +    l  a+e d +  ++i
  MMETSP0890-20130614|7092_1 291 VLFVDEVHMLDVECFSWLNRALEyDLAPVLII 322
                 78888888888888888888887333322333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   9.4e-05      0.04       5      96 ..      59     194 ..      54     210 .. 0.61
   2 !   13.3   0.0   0.00014     0.061      42     129 ..     242     330 ..     199     332 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.4e-05
   PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaae..karvvfveapast.spkellqkllsalglpakg......................................rltteellealqealrrrrt...rlliiDEa 96 
                 + +++ G +G+GKT  +  la+ l e    +    +++++ e ++     +++++ +   + ++++                                       + t  +l +++ ea ++++    +++ iD a
  MMETSP0890-20130614|7092_1  59 RAILLAGKPGTGKTAIAMALAQALGEDTPFTSmaASEIFSLEMSKTEaLTQAFRRSIGVRIMEETDIiegevveiqleegvpttdsgsdkkgieksgrvtlctteMETVYDLGSRMIEAFQKEQIsagDVISIDKA 194
                 67999*****************997765555576555555555555522222244443333333333555555555555555555555555555555555555555555555555555555555556666666655 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 0.00014
   PF13401.1  42 fveapastspkellqkllsalglpakgrltteellealqealrrrrt............rlliiDEaqrLseealeelrsllddetgvklvlvGtp.elek 129
                  +++ +s   +++l  +++  g+ +++    +e +       +++              ++l +DE++ L  e++++l + l+     +++++ t+ +++k
  MMETSP0890-20130614|7092_1 242 EIDVINSR-TQGFLALFAGDTGEIKHE---VREQI-------DSKVNewreegkativpGVLFVDEVHMLDVECFSWLNRALE-YDLAPVLIIATNrGIAK 330
                 34444444.444445555555544444...22222.......2222222224446888********************88888.88888888888877766 PP

>> PF03796.10  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   5.5e-09   2.3e-06      20      69 ..      59     112 ..      50     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 5.5e-09
                 -EEEEEESTT---HHHHHHHHHHHHHT-....------EESSS-HHHHHHHHHH CS
  PF03796.10  20 dLiiiaaRPsmGKtalalniarnvalke....kkpvlifSlEMsaeqlaerlla 69 
                   i++a++P+ GKta+a+ +a+ + +++      +  ifSlEMs+ + +++   
  MMETSP0890-20130614|7092_1  59 RAILLAGKPGTGKTAIAMALAQALGEDTpftsMAASEIFSLEMSKTEALTQAFR 112
                 5699*******************99998777566889********987776655 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.3e-07    0.0004       2      33 ..      61      93 ..      60     134 .. 0.74
   2 ?    4.3   0.0     0.065        28      65      91 ..     288     314 ..     256     332 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 9.3e-07
                EEEE------HHHHHHHGGGGB.S--EEEEE-- CS
   PF07728.9  2 vlLvGppGtgKselaerlaeal.nreveyvqlt 33
                +lL G+pGtgK+ +a+ la+al +++ ++ +  
  MMETSP0890-20130614|7092_1 61 ILLAGKPGTGKTAIAMALAQALgEDTPFTSMAA 93
                79********************85555544443 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.065
                 G-SEEEEESGGG---HHHHHHHHHHHS CS
   PF07728.9  65 egeilvlDEveraesevlnsLlsllee 91 
                  + +l++DEv++++ e ++ L++ le 
  MMETSP0890-20130614|7092_1 288 VPGVLFVDEVHMLDVECFSWLNRALEY 314
                 5789*******************9996 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.4     4e-07   0.00017       5      69 ..      34     105 ..      31     115 .. 0.77
   2 ?    1.5   0.0      0.29   1.2e+02     107     132 ..     289     314 ..     281     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4e-07
  PF01078.16   5 vkGqeeakraleia.......aaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkee 69 
                 ++Gqe+a++a+ i         + g  +ll+G pG+GKt +a +l++ l + +   ++ +++i s++ +k+e
  MMETSP0890-20130614|7092_1  34 MVGQEKARKAMGIVykmikegKIAGRAILLAGKPGTGKTAIAMALAQALGEDTPFTSMAASEIFSLEMSKTE 105
                 679999999998853322222234578**************************************9884433 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.29
  PF01078.16 107 nGvLfLDElpefkrkvleaLRePled 132
                  GvLf+DE+  ++ + +  L + le 
  MMETSP0890-20130614|7092_1 289 PGVLFVDEVHMLDVECFSWLNRALEY 314
                 59********9999999999888875 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.1e-06   0.00047      21     166 .]      57     322 ..      35     322 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.1e-06
   PF13191.1  21 egsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn......lpysaiiqalrellrqlltelaaelggwreallaalga...................................................................................................lipelegiiglqalvalldaalartr...........................................rpk....lvlvlDDlqwadresldlLealler.lselpllvv 166
                 +g+ ++l+ G +G+GK++++ +la++ l e+  f++   +    +      + ++a++qa+r  +   + e+++ ++g   +++  +g                                                                                                                                                                         +       vl++D+++ +d e  ++L ++le  l+  p+l++
  MMETSP0890-20130614|7092_1  57 AGR-AILLAGKPGTGKTAIAMALAQA-LGEDTPFTSMAAS----EifslemSKTEALTQAFRRSIGVRIMEETDIIEGEVVEIQLEEGVpttdsgsdkkgieksgrvtlcttemetvydlgsrmieafqkeqisagdvisidkashrvsklgrsfarsrdydamgpttrfvqcpegelqkrkevvhtvS------------------------LheidvinsrtqgflalfagdtgeikhevreqidskvnewreegK-AtivpGVLFVDEVHMLDVECFSWLNRALEYdLA--PVLII 322
                 455.9*****************4444.4444444444444....3444479888999999999999999999999998888888888888888888888888777777777777777777777777777776666655555555555555555555555555555555555443333333333333330........................033333333333555555555555555556666666666655442.145557888888888888888888888877333..66665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.3e-07   9.7e-05      31      66 ..      56      91 ..      27     195 .. 0.88
   2 ?   -3.0   0.0         8   3.4e+03      70     106 ..     362     399 ..     350     426 .. 0.61

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.3e-07
   PF13481.1 31 prgsltllaGapgtGKStlalqlaaavatGepflgp 66
                 +g  +llaG pgtGK+ +a++la a+ + +pf+ +
  MMETSP0890-20130614|7092_1 56 IAGRAILLAGKPGTGKTAIAMALAQALGEDTPFTSM 91
                468899**********************99999773 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 8
   PF13481.1  70 epgrVlylsaEdseaelrrrlsailaal.ddpenlllv 106
                 e +++l + aE+   e+ + +  +l+++  ++++ +++
  MMETSP0890-20130614|7092_1 362 ELKKILTIRAEEEDVEINEDALDLLTRIaMETSMRYAI 399
                 55677888888888888888887777763224444444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.6e-06    0.0011       1      43 [.      61     105 ..      61     140 .. 0.79
   2 ?   -1.9   0.0       8.2   3.5e+03      95     109 ..     215     232 ..     174     233 .. 0.77
   3 ?   -1.2   0.1       4.9   2.1e+03      25      49 ..     446     467 ..     408     477 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.6e-06
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl..gdvlrdlakengleeevddki 43 
                 Il++G+pG+GKt +a +La+ l       ++a ++ ++ e  + +
  MMETSP0890-20130614|7092_1  61 ILLAGKPGTGKTAIAMALAQALgeDTPFTSMAASEIFSLEMSKTE 105
                 99*******************988888888888888888877764 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 8.2
   PF13238.1  95 l...vvLradpeelarRl 109
                 +    ++++++ el++R 
  MMETSP0890-20130614|7092_1 215 GpttRFVQCPEGELQKRK 232
                 355568999999999995 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 4.9
   PF13238.1  25 vlrdlakengleeevddkidtkesk 49 
                  ++++++e ++e+++dd+   ++ +
  MMETSP0890-20130614|7092_1 446 FMFSEIQEDEDEDDDDDD---DQAN 467
                 455556666666666666...3332 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00013     0.057       6      59 ..      42      94 ..      35     107 .. 0.79
   2 ?    4.4   0.0     0.049        21      95     118 ..     290     313 ..     279     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHHHTTS-S-EEEE-------HHHHHHHHHTSTTTTS--EEEETT CS
  PF00158.21  6 ealkelleqikkvaktdltvlitGesGtGKellAraiheaskrkkkpfvavnca 59
                +a+  ++++ik+       +l+ G+ GtGK+ +A a+ +a   +++pf ++  +
  MMETSP0890-20130614|7092_1 42 KAMGIVYKMIKEGKIAGRAILLAGKPGTGKTAIAMALAQALG-EDTPFTSMAAS 94
                5666777888888888899*****************998766.66777776655 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.049
                 --EEEET-----HHHHHHHHHHHH CS
  PF00158.21  95 GtLfLDeigelplelQekLlrvlq 118
                 G+Lf+De++ l++e+ + L r+l+
  MMETSP0890-20130614|7092_1 290 GVLFVDEVHMLDVECFSWLNRALE 313
                 9************99988888887 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.5e-06    0.0032       8      35 ..      57      83 ..      51     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.5e-06
   PF13245.1  8 agnpllvvtGgPGtGKTttlaaiiaall 35
                a  + +++ G PGtGKT+ + a++ al 
  MMETSP0890-20130614|7092_1 57 A-GRAILLAGKPGTGKTAIAMALAQALG 83
                4.566677*********55555555543 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.9e-06    0.0029       1      50 [.      59     109 ..      59     134 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 6.9e-06
   PF05729.7   1 rtvilqGeaGsGKTtLlqklasawakgklpqda.fklvFflslrelsrskn 50 
                 r ++l G++G GKT+ +  la+a+ +++++  +  + +F l++++ +  ++
  MMETSP0890-20130614|7092_1  59 RAILLAGKPGTGKTAIAMALAQALGEDTPFTSMaASEIFSLEMSKTEALTQ 109
                 5689*************************9987677777777777665555 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05    0.0068      11      38 ..      50      77 ..      20     115 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
   PF06745.8 11 llkgGipegrvvlitGepGtGKtifalq 38
                ++k+G   gr++l++G+pGtGKt +a+ 
  MMETSP0890-20130614|7092_1 50 MIKEGKIAGRAILLAGKPGTGKTAIAMA 77
                5689999****************99985 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   1.5e-05    0.0066      17      41 ..      59      83 ..      52      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.5e-05
   PF06414.7 17 kavllgGqpGAGKtslaellleela 41
                +a+ll+G pG GKt++a +l ++l+
  MMETSP0890-20130614|7092_1 59 RAILLAGKPGTGKTAIAMALAQALG 83
                69*******************9996 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-05    0.0066       2      32 ..      61     101 ..      60     212 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-05
                 E--B--TT---HHHHHHHHHHST..........EEEEEGGG CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlg..........lpvlsldd 32 
                 i++ G pG+GK+ +a +La++lg           +++sl++
  MMETSP0890-20130614|7092_1  61 ILLAGKPGTGKTAIAMALAQALGedtpftsmaaSEIFSLEM 101
                 8999*****************97554443333333445544 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-05     0.011       3      47 ..      60     111 ..      58     133 .. 0.67
   2 ?   -3.5   0.0       8.2   3.5e+03      57      93 ..     262     298 ..     226     301 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.6e-05
   PF09848.4   3 vilvtGvaGtGKtvvalnllael.......edseeertavflsgNhplvkvl 47 
                  il  G++GtGKt +a++l+++l       ++ ++e  +  +s+ ++l +++
  MMETSP0890-20130614|7092_1  60 AILLAGKPGTGKTAIAMALAQALgedtpftSMAASEIFSLEMSKTEALTQAF 111
                 68899*****************975544443333444444444444444444 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 8.2
   PF09848.4  57 kkkkkeavkkpssfinnlskaekkkpkedvvivDEAh 93 
                 ++ k e+ ++++s +n+ +++ k+     v++vDE h
  MMETSP0890-20130614|7092_1 262 GEIKHEVREQIDSKVNEWREEGKATIVPGVLFVDEVH 298
                 5555555555566666666444444445566666666 PP

>> PF02277.12  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   2.1e-05    0.0088     125     176 ..      36      87 ..      10     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHHHHT.--SEEEE--B---THCCCHHHHHHH-...H CS
  PF02277.12 125 seeeaeaaleaGielvkeelskgadllivGemgignTttaaallaaLlgada 176
                  +e+a++a+ +  +++ke + +g  +l+ G  g g T++a+al++aL + ++
  MMETSP0890-20130614|7092_1  36 GQEKARKAMGIVYKMIKEGKIAGRAILLAGKPGTGKTAIAMALAQALGEDTP 87 
                 6899*******************************************75544 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05     0.012      48      70 ..      59      81 ..      49     105 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-05
  PF01695.12 48 enlvllGpsGvGKthlAialgve 70
                + ++l G +G+GKt +A+al+++
  MMETSP0890-20130614|7092_1 59 RAILLAGKPGTGKTAIAMALAQA 81
                5799****************986 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.5e-05     0.015      14      47 ..      57      90 ..      46      99 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.5e-05
  PF02367.12 14 agdvvlLsGdlGaGKTtlvkglakglgvkgevtS 47
                ag+ +lL G+ G+GKT ++ +la++lg+++++tS
  MMETSP0890-20130614|7092_1 57 AGRAILLAGKPGTGKTAIAMALAQALGEDTPFTS 90
                6788************************999888 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     8e-05     0.034      22      81 ..      61     137 ..      59     282 .. 0.67
   2 ?    0.2   0.2       1.7   7.1e+02     106     150 ..     410     453 ..     331     474 .. 0.49

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8e-05
   PF13476.1  22 tlItGpNGsGKTTildAiclaLygktsrlkks.........rgrgilkddveiek................egkkkayvelsfed 81 
                 +l+ G+ G+GKT i  A+  aL+ +t+ ++           ++ ++l++                      eg   ++ve+++e+
  MMETSP0890-20130614|7092_1  61 ILLAGKPGTGKTAIAMALAQALGEDTPFTSMAaseifslemSKTEALTQ-----AfrrsigvrimeetdiiEG---EVVEIQLEE 137
                 5889********************9987766644444443322222222.....1333335555554433323...445555433 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.7
   PF13476.1 106 kkeilelleideleqfleellksdkeilpliaylgqerekekfkl 150
                 +k ++  ++i++ +  ++ +++ + ++  l+ y++q   + ++++
  MMETSP0890-20130614|7092_1 410 SKRNSPSVQIEDVKRVYSLFVDLKRSTQFLLEYQKQFM-FSEIQE 453
                 33333333443332222222222222222333333332.322222 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   0.00011     0.048      19      76 ..      60     178 ..      38     486 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00011
   PF13086.1  19 itliqGpPgtGKtttivelisql.......................................lsek.......................seseakkkkrvLvcapsnaavDeilerlle.l 76 
                   l+ G+PgtGKt   ++l ++l                                          +                        ++  +k+ rv +c+     v  + +r++e +
  MMETSP0890-20130614|7092_1  60 AILLAGKPGTGKTAIAMALAQALgedtpftsmaaseifslemsktealtqafrrsigvrimeE--TdiiegevveiqleegvpttdsgsDKKGIEKSGRVTLCTTEMETVYDLGSRMIEaF 178
                 46999******************7777777777666666666666666665555555555440..05555555555556666666667677777888899999999999988888888842 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00038      0.16      19      49 ..      59      88 ..      50     125 .. 0.80
   2 ?   -0.1   0.0       1.2   5.2e+02      92     123 ..     280     318 ..     256     326 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00038
   PF13604.1 19 rvavvqGpAGtGKttvlkalrealeaagkrv 49
                r+ ++ G +GtGKt +  al++al ++  + 
  MMETSP0890-20130614|7092_1 59 RAILLAGKPGTGKTAIAMALAQALGED-TPF 88
                678899*****************9985.333 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 1.2
   PF13604.1  92 dakt.......llvvDEAgmvdtrqlarlleaaekagak 123
                 +++        +l+vDE  m+d + +  l +a e + a 
  MMETSP0890-20130614|7092_1 280 REEGkativpgVLFVDEVHMLDVECFSWLNRALEYDLAP 318
                 2222333566699********998887777777666555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   5.5e-05     0.024       2      51 ..      61     113 ..      60     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.5e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar...gypvvpEvarevleeklakgeealpwe.ed 51 
                 i + G p+tGKT ++ aLa+    ++p +  +a e+++ ++ k+e  l ++ ++
  MMETSP0890-20130614|7092_1  61 ILLAGKPGTGKTAIAMALAQAlgeDTPFTSMAASEIFSLEMSKTEA-LTQAfRR 113
                 7899***************87788899*************999886.6655333 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0032       1.4      20      77 ..      56     112 ..      37     135 .. 0.72
   2 ?    3.4   0.0     0.061        26     102     126 ..     288     312 ..     260     328 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0032
   PF05970.9  20 ekgklfFvtGsgGtgKtylwkallkklrsegkivlavAssGiAalllpgGrtahsrfk 77 
                   g+ + + G  GtgKt +  al ++l    +    +A s i +l + +   +   f+
  MMETSP0890-20130614|7092_1  56 IAGRAILLAGKPGTGKTAIAMALAQALGED-TPFTSMAASEIFSLEMSKTEALTQAFR 112
                 4699********************999766.666777888899998877665555554 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.061
   PF05970.9 102 ktsliiwDEapmverecfealdrtl 126
                    ++ +DE+ m++ ecf  l+r l
  MMETSP0890-20130614|7092_1 288 VPGVLFVDEVHMLDVECFSWLNRAL 312
                 456899***************9987 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00016     0.066     102     139 ..      46      83 ..      38      86 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00016
  PF01057.12 102 vllawlskqlgkrntvwfyGpantGktnlaeaIakavp 139
                 ++++++++ +    ++++ G++ tGkt +a+a+a+a+ 
  MMETSP0890-20130614|7092_1  46 IVYKMIKEGKIAGRAILLAGKPGTGKTAIAMALAQALG 83 
                 56666666666667899******************985 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00026      0.11      20      44 ..      59      83 ..      40      92 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00026
  PF02562.11 20 divfaiGpaGtGKTylavalaveal 44
                  ++++G+ GtGKT +a+ala ++ 
  MMETSP0890-20130614|7092_1 59 RAILLAGKPGTGKTAIAMALAQALG 83
                467899*************997665 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0073       3.1       4      32 ..      62      88 ..      60     144 .. 0.67
   2 ?    2.9   0.0      0.13        57      56      90 ..     261     299 ..     227     307 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0073
   PF05707.7  4 lvtGkpGsGKtleaVskdilpalkeGrkv 32
                l  GkpG+GKt+ a      +al e+ ++
  MMETSP0890-20130614|7092_1 62 LLAGKPGTGKTAIAMAL--AQALGEDTPF 88
                678********888766..7888776554 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.13
   PF05707.7  56 lidisnpegeelekyldkwrtld....kgallviDEcqq 90 
                   +i+++  e++++++++wr+        ++l++DE+++
  MMETSP0890-20130614|7092_1 261 TGEIKHEVREQIDSKVNEWREEGkatiVPGVLFVDEVHM 299
                 4567788999999******993334556799******98 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00037      0.16       1      26 [.      61      86 ..      61     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00037
  PF00910.17  1 iwlyGpsgeGKStlakeLakallkkl 26
                i+l G++g+GK+ +a  La+al ++ 
  MMETSP0890-20130614|7092_1 61 ILLAGKPGTGKTAIAMALAQALGEDT 86
                6899*****************99665 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00034      0.14       3      25 ..      62      84 ..      60      89 .. 0.89
   2 ?   -1.7   0.0       3.3   1.4e+03      95     126 ..     317     357 ..     210     389 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00034
                xxxxxxxxxxxxxxxxxxxxxxx RF
  PF01656.18  3 iasgkGGvGKTtlaanLaralak 25
                + +gk G+GKT +a +La+al +
  MMETSP0890-20130614|7092_1 62 LLAGKPGTGKTAIAMALAQALGE 84
                568999**************987 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.3
                 xxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxx RF
  PF01656.18  95 yDvviiDtapglgel.........vanalqaadllvvviep 126
                 + v+ii t+ g++++          +   ++  l+++ +ep
  MMETSP0890-20130614|7092_1 317 APVLIIATNRGIAKIrgtdyksphGVPLDMLDRLMIITTEP 357
                 55555555555554444444444433333344444444444 PP

>> PF13177.1  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00096      0.41       6      48 ..      44      87 ..      38     204 .. 0.83
   2 ?   -0.3   0.0       1.5   6.5e+02      23      51 ..     256     284 ..     243     429 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00096
   PF13177.1  6 lkilsnaikkgrla.hayLfyGeegigkkelalelakallcekk 48
                + i  ++ik+g++a  a+L+ G+ g+gk  +a++la+al    +
  MMETSP0890-20130614|7092_1 44 MGIVYKMIKEGKIAgRAILLAGKPGTGKTAIAMALAQALGEDTP 87
                56777899999998579********************9876555 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.5
   PF13177.1  23 LfyGeegigkkelalelakallcekknet 51 
                 Lf G+ g  k+e+  ++ ++++  +++++
  MMETSP0890-20130614|7092_1 256 LFAGDTGEIKHEVREQIDSKVNEWREEGK 284
                 78888888888887777777776666544 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00051      0.22       2      25 ..      61      88 ..      60     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00051
   PF13671.1  2 vllvGlpGsGKstlaerllkklg....y 25
                +ll G pG+GK+  a +l+++lg    +
  MMETSP0890-20130614|7092_1 61 ILLAGKPGTGKTAIAMALAQALGedtpF 88
                7899****************99865442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.97u 0.50s 00:00:01.47 Elapsed: 00:00:01.01
# Mc/sec: 1160.22
//
Query:       MMETSP0890-20130614|7095_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-19   69.9   0.1    3.1e-19   69.3   0.0    1.4  1  PF13621.1 Cupin-like domain
      1e-11   44.5   0.0    1.5e-11   44.0   0.0    1.3  1  PF08007.7 Cupin superfamily protein
  ------ inclusion threshold ------
      0.034   13.0   0.0      0.062   12.2   0.0    1.4  1  PF06560.6 Glucose-6-phosphate isomerase (GPI)


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   6.7e-23   3.1e-19     120     239 ..     166     277 ..      27     280 .. 0.86

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 6.7e-23
   PF13621.1 120 fapelfgkkpeavnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvdvenpdlekfprfkda.kalevelepGevLYlPalWfHeVsssseegvhia 239
                 ++++  +k+   + lW+++++ + +lH+D+ +N++++++G+Kr+ L+ p+  ++l+          ++++  ++ + +k +++ +  + ++++l pG+vLY+P  W H+V ++s++ ++++
  MMETSP0890-20130614|7095_1 166 LKSNSSSKNLSTAMLWISQRGVVAGLHYDVSHNFLTQLRGTKRVELWWPESHENLH---------FFPRLHRARQQSQKIQSIGQIpPNFVFDLIPGDVLYIPPYWSHRVNTTSSGSLSLS 277
                 44455556666788******************************************.........4668888999999999*****888*********************99976666655 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   3.3e-15   1.5e-11     129     218 ..     190     301 ..     162     388 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 3.3e-15
                 -SEE-SSEEEEEEEE--EEEEEE-.........-SSTT-SS-EE--TTT--..--SEEEEE----EEEE----EEEEE---.----EEEEEEEE-TT................ CS
   PF08007.7 129 gpHyDdyDVfllQleGrkrWrvyk.........ptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvaedesltlSvglraptaael..............l 218
                 g HyD    fl Ql G+kr  ++           +  + +++++++++ +++  p + f L pGD+LY+P+ + H+  + + s +lS+++ +p+ +++              +
  MMETSP0890-20130614|7095_1 190 GLHYDVSHNFLTQLRGTKRVELWWpeshenlhfFPRLHRARQQSQKIQSIGQIPPNFVFDLIPGDVLYIPPYWSHRVNTTS-SGSLSLSVISPSSEDFagqrafavgapltkC 301
                 77*****************888877778999887777888999999**********************************9.8899999999999998444444444444440 PP

>> PF06560.6  Glucose-6-phosphate isomerase (GPI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05     0.062     116     144 ..     252     280 ..     235     308 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   PF06560.6 116 kgtvvivPPnygHvsiNigeepLvmanlv 144
                 +g+v ++PP++ H+   ++ + L ++ + 
  MMETSP0890-20130614|7095_1 252 PGDVLYIPPYWSHRVNTTSSGSLSLSVIS 280
                 689**********9655566666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1306.31
//
Query:       MMETSP0890-20130614|7091_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-55  186.5   0.0    6.9e-55  185.3   0.0    1.7  2  PF13718.1  GNAT acetyltransferase 2
    1.1e-44  152.0   0.0    3.3e-44  150.4   0.0    1.9  1  PF05127.9  Helicase
      8e-21   73.4   0.0    5.7e-20   70.6   0.0    2.4  2  PF08351.6  Domain of unknown function (DUF1726)
    1.1e-18   67.0   0.4    4.5e-18   65.0   0.2    2.1  2  PF13725.1  Possible tRNA binding domain
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.061   13.3   0.0    1.8  1  PF13508.1  Acetyltransferase (GNAT) domain
      0.033   14.1   0.0      0.092   12.6   0.0    1.7  1  PF00583.19 Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> PF13718.1  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.0     3e-58   6.9e-55       1     197 [.     527     718 ..     527     719 .. 0.88
   2 ?   -3.2   0.0       1.6   3.7e+03      15      50 ..     851     889 ..     848     895 .. 0.68

  Alignments for each domain:
  == domain 1    score: 185.3 bits;  conditional E-value: 3e-58
   PF13718.1   1 klfallvsaHYknsPnDLqlLldapahklfvlldeek.....pevlcvlqvalEGeiskelveavlaggrrpsGdLipwtlaqqfqdeefaqlsgaRivRIAvhpslqrmgyGsellellekyaegklssleeqeekekelpelllelse..ekpekldylgvsFGltseLlkFWkkngfspvylrqtkneltGehsaimlkpl 197
                 +++++l  aHY++sPnD++ ++d+pah++fvll++ +     p++l+v+++a EG i+ +           ++GdLipwtl+qqf+++ f++l+g+Ri+RI +hp+++ mgyGs++l+ll++y++ +++s+ +q+++    ++l++++s+     +   ++g+sFG t +Ll+FW++++f+pvylrqt+ eltGeh+ai+l+ l
  MMETSP0890-20130614|7091_1 527 RMVNILSLAHYRSSPNDIEKMADEPAHRIFVLLAPVQkgqaiPDILAVVHLAFEGCINTT--------ADNKEGDLIPWTLSQQFCESAFPKLAGVRILRIVTHPEARAMGYGSRTLHLLIDYFQRSTTSHVQQQST----ASLFVPISQlsLCDNGPIWIGASFGGTLQLLNFWSRAQFRPVYLRQTASELTGEHTAILLRCL 718
                 5899*****************************99888999***************9987........34579**************************************************97655555444443....444444444004566778******************************************976 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.6
   PF13718.1  15 PnDLqlLldapahklfvlldeek...pevlcvlqvalEG 50 
                  +DL   l+ p+ ++++l+++     +++l  +q  +EG
  MMETSP0890-20130614|7091_1 851 VDDLSNTLNIPSNQVLALYNKAMrkiSQCLQRMQKEEEG 889
                 689999999999999999987764444455555555555 PP

>> PF05127.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   1.5e-47   3.3e-44       2     177 .]     242     486 ..     241     486 .. 0.88

  Alignments for each domain:
  == domain 1    score: 150.4 bits;  conditional E-value: 1.5e-47
   PF05127.9   2 ltAdRGRGKSaalGlalaalvaegksnilvtapskenvktlfeflekglealglke................................eekkekaekaevrvn..................kqrieyiapdellklkeqa..................dllvvDEAAaiplpllkkllekpkrvvlatTvhGYEGtGrgfslkflkqlkkk...............kkrslkelelkepiRyaegdplEkwlndlLlLd 177
                 lt++RGRGKSa+lGlalaa+   g+ +++++aps e+v ++f+f+  gleal++ +                                                                 +q+++y+ pde+  +                      dll++DEAAa+plp++k+ll +p+ ++l++Tv GYEGtGr+++lk+l+++kk+                + ++ke++l  piRya+gdp+E+wln +L+Ld
  MMETSP0890-20130614|7091_1 242 LTSARGRGKSATLGLALAAAFDLGYGSMCLVAPSAESVVQIFNFVVIGLEALEYIQnvhflimhsgghqscndqesgpssfsrsqhrgG-------------GqlticikmiknkngakrgQQQLRYLWPDEARYAFGGRrdktiktyskqsiltpttDLLILDEAAAMPLPFVKQLL-GPYPTLLSSTVDGYEGTGRALQLKLLSEIKKEaddsmidteisgkngIEDKVKEIKLVSPIRYASGDPVERWLNIALCLD 486
                 89****************************************************999**********9999888877777775544441.............03333333445556777779999999999988766544677889999999999999********************.*******************************9***************5559****************************7 PP

>> PF08351.6  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   2.5e-23   5.7e-20       1      84 [.      76     156 ..      76     167 .. 0.85
   2 ?   -1.5   0.0       0.8   1.8e+03       5      22 ..     379     396 ..     376     401 .. 0.85

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 2.5e-23
   PF08351.6   1 ykesekiLGntfdmlvlddfealtPnllarlvetveGGGlivlllptleslkqlytdvharlrtealqdvkgrFnerfirslas 84 
                 y++++ iLG+tf+ lvl+df+a+tPn+la++vet+eGGGli+ll+  l+s+++ly+      + +     ++rF +r+++ l +
  MMETSP0890-20130614|7091_1  76 YRDTASILGTTFGTLVLQDFDAVTPNILAQTVETIEGGGLIILLMGALTSVESLYKAAGGGGNNDTE---SRRFMQRVLLLLLK 156
                 89******************************************************88888877766...78888887776643 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.8
   PF08351.6   5 ekiLGntfdmlvlddfea 22 
                 + iL  t d+l+ld   a
  MMETSP0890-20130614|7091_1 379 QSILTPTTDLLILDEAAA 396
                 789999********9876 PP

>> PF13725.1  Possible tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.6     1e+04      61      85 ..     701     723 ..     692     725 .. 0.70
   2 !   65.0   0.2     2e-21   4.5e-18       2      99 ..     733     864 ..     732     867 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.6
   PF13725.1  61 srlgkvslsslqsaiLlaiglQrks 85 
                 + +   +l+ ++ aiLl+++   ++
  MMETSP0890-20130614|7091_1 701 QTA--SELTGEHTAILLRCLKGDHD 723
                 433..47999999999998766555 PP

  == domain 2    score: 65.0 bits;  conditional E-value: 2e-21
   PF13725.1   2 rrrflslls.yqfrelpav.............llea....................eldatlspfDlkrLesyannlldyhvi...vpllarlyflsrlgkvslsslqsaiLlaiglQrksidelakelnlpsnk 99 
                 rrrf++l+s + fre +                                       +  a++s++Dl rLe+ya+n  d+ vi    pl a+l+f+srl+ v lsslq+a+L +  lQr+++d+l++ ln+psn+
  MMETSP0890-20130614|7091_1 733 RRRFIALSSsPCFREIELGfalaylghadsdqH--VdntiideheqltnlrnhsgiSALANFSDRDLIRLEMYARNAIDHRVIadlAPLTATLVFTSRLQ-VRLSSLQAAVLFGFALQRRDVDDLSNTLNIPSNQ 864
                 688966655488999884476666555444441..0444554444444455555555556666********************999999**********7.********************************96 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.061      26      58 ..     613     644 ..     586     696 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
   PF13508.1  26 tayiggvavdpeyrgkGlGskllnklkeeygek 58 
                  ++i +++++pe r  G+Gs+ l+ l  +++ +
  MMETSP0890-20130614|7091_1 613 GVRILRIVTHPEARAMGYGSRTLHLLIDYFQ-R 644
                 46899********************988887.2 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     4e-05     0.092      26      56 ..     614     644 ..     580     655 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4e-05
                 EEEEEEEESGGGTTTT-HHHHHHHHHHHHHH CS
  PF00583.19  26 ayieglaVspeyrgqGiGkaLleallekare 56 
                 + i +++ +pe+r +G+G++ l  l+++ ++
  MMETSP0890-20130614|7091_1 614 VRILRIVTHPEARAMGYGSRTLHLLIDYFQR 644
                 56899**********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.36u 0.50s 00:00:01.86 Elapsed: 00:00:00.95
# Mc/sec: 2315.64
//
Query:       MMETSP0890-20130614|7099_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 963.75
//
Query:       MMETSP0890-20130614|7098_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 829.22
//
Query:       MMETSP0890-20130614|7097_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.1e-105  349.3   0.0   9.4e-105  348.7   0.0    1.3  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
    6.1e-20   71.6   0.8    1.1e-19   70.8   0.5    1.4  1  PF00306.22 ATP synthase alpha/beta chain, C terminal domain
    2.5e-15   56.3   0.3    7.5e-15   54.7   0.2    1.9  1  PF02874.18 ATP synthase alpha/beta family, beta-barrel domain


Domain annotation for each model (and alignments):
>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.7   0.0  2.1e-108  9.4e-105       1     215 []     234     461 ..     234     461 .. 0.99

  Alignments for each domain:
  == domain 1    score: 348.7 bits;  conditional E-value: 2.1e-108
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20   1 tgirvlDslfPivqGqttlipGafgcGktvisqslsknsnsdaiiyvgiGergnevaevleef..........rkepimkrttlvantsnepvaareasiytgitlAeyfrdqgknVlliaDslsrwaealreisgrlgempadqgypaylgaklaslyeRagka...gspdriGSvtivaavspaggdfsdpvttstlgitdvfivLdkklaqrkhfPaintlvSyS 215
                 tg rv+D++fP v G+t+++pGafgcGktvisqs+sk snsd++iyvg+Gergne+aevl +f          r+ +imkrt+lvantsn+pvaareasiytgitlAeyfrd+g nV+++aDs+srwaealreisgrlgempad gypaylga+la +yeRag+a   gsp r+G vt++ avsp+ggdfsdpvt +tl+i++vf++LdkklaqrkhfP++n+l+Sy+
  MMETSP0890-20130614|7097_1 234 TGLRVVDAIFPSVLGGTCAVPGAFGCGKTVISQSISKFSNSDCVIYVGCGERGNEMAEVLCDFpeltttlqdgREVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDMGLNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRAeclGSPSRQGTVTVIGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSVNWLISYT 461
                 89********************************************************************999999******************************************************************************************************************************************************96 PP

>> PF00306.22  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.5   2.4e-23   1.1e-19       3     111 ..     481     619 ..     479     621 .. 0.90

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 2.4e-23
                 HHHHHHHHHHHHHHHHCCHHH--.TTS-HHHHHHHHHHHHHHH.HT---TTGGG...........-.............................HHHHHHHHHHCC----TTS-GGGHHHHHHHHHHH.HHHHHHHHHHHHH CS
  PF00306.22   3 vagklkleLaqyrElaafvqlvGsdaLseedkltlerarrlee.fLkQnqyspl....pvekqvvs............................iveetidlfyallrgklddlpeeelekigtkdiek.elnkeleeklkkl 111
                 ++++++++L+q++ l ++vqlvG+++Lse++k+++e+a++++e fL+Qn+++++    p+ k++++                            i+  + +l++++++ k+ d++    e+i     ++ el+++++e ++k+
  MMETSP0890-20130614|7097_1 481 LRNRARDILQQEDALTEIVQLVGKESLSEDQKVLMETAKIIREdFLQQNAFTDYdftcPLSKSIGMlkaivtfydaaqkaiadsppdakltwamIKTAQAPLIQKVVDTKFIDPK-LPDEQIA---QNYnELANDINESFNKM 619
                 7899**************************************************************999999*********************99999*************9987.4444442...33356899999988886 PP

>> PF02874.18  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.2   1.6e-18   7.5e-15       1      68 [.      15      76 ..      15      77 .. 0.97

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.6e-18
                ETCC---EEEEE-STTEE--TTTEEEEEEEEES-EEEEEEEEE-SSEEEEEEB---TT-B----EEEE CS
  PF02874.18  1 ivqviGpVvdvefgigrlpgiynalkvelvefgklvlgvalnlgddkVriiamgstdGlkrGdeVkdT 68
                i +v+Gp+v++e+++g   ++y++++v+     ++++g+++ l++d++ ++++++t+Gl++Gd+V +T
  MMETSP0890-20130614|7097_1 15 IQRVSGPLVIAENMSG--AAMYELVRVG--Y--TKLVGEIIKLEGDTASLQVYEDTSGLTVGDPVLRT 76
                679*************..**********..8..**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.80
# Mc/sec: 1863.17
//
Query:       MMETSP0890-20130614|7103_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-06   26.4   0.2    0.00022   21.4   0.1    2.2  2  PF12680.2 SnoaL-like domain
  ------ inclusion threshold ------
       0.11   12.0   0.0        0.2   11.1   0.0    1.4  1  PF07366.7 SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.016   1.1e+02      58      83 ..       5      29 ..       1      63 [. 0.75
   2 !   21.4   0.1   3.2e-08   0.00022       7      65 ..      95     153 ..      86     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.016
                EEEESSTTEEEEEEEEE-EESBS--E CS
   PF12680.2 58 edviadgdrvvvrwtvtgtipptgrg 83
                  v++d++  +v+wt++++ +++ + 
  MMETSP0890-20130614|7103_1  5 GIVLEDENSTAVEWTLRHK-QKNDQS 29
                557999**********984.333333 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 3.2e-08
                 HHHTT-HHHHHHTEEEEEEEECTS--E---HHHHHHHTTHHHCEECEEEEEEEEESSTT CS
   PF12680.2   7 alnagdldalaallapdvvwedpfgelrGrealraffrallaafpdlrfevedviadgd 65 
                 a++  d +a+ al+a d+v+ +p     Grea    f+++++ + d+r++   vi+d  
  MMETSP0890-20130614|7103_1  95 AWSMVDREAIKALWASDCVLVNPWTVEVGREARLFGFDTFFSHYRDVRITTNSVIVDNR 153
                 788889*****************88899**************************99976 PP

>> PF07366.7  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05       0.2       9      68 ..      94     152 ..      84     167 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.9e-05
   PF07366.7   9 evwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaeg 68 
                  +w+  d +a++ l+a d+v  np  ++ +G+e+    + ++f    D +++++++++++
  MMETSP0890-20130614|7103_1  94 HAWSMVDREAIKALWASDCVLVNPW-TVEVGREARLFGFDTFFSHYRDVRITTNSVIVDN 152
                 57899999*************9665.*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 640.12
//
Query:       MMETSP0890-20130614|7104_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-28   98.3   0.0    4.7e-28   97.2   0.0    1.6  2  PF00447.12 HSF-type DNA-binding
     0.0047   16.4   2.9     0.0085   15.5   2.0    1.3  1  PF04156.9  IncA protein
  ------ inclusion threshold ------
      0.038   13.6   3.8      0.061   13.0   2.6    1.2  1  PF12718.2  Tropomyosin like
      0.048   12.4   1.8       0.07   11.9   1.2    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
       0.16   11.4   2.0       0.25   10.7   1.4    1.2  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.19   11.0   1.3       0.46    9.8   0.9    1.7  1  PF04977.10 Septum formation initiator
       0.42   10.8   3.1       0.88    9.8   2.1    1.5  1  PF02465.13 Flagellar hook-associated protein 2 C-terminus


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.4e-31   4.7e-28       1     101 [.      30     128 ..      30     131 .. 0.93
   2 ?   -3.9   0.0         7   1.4e+04      44      57 ..     302     315 ..     300     315 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 2.4e-31
  PF00447.12   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                 aFl+k+y+++++    ++  wse g+++v+ld+e+fa++ +p+yFkh+nf SFvRQLn YgF+k++ + ++  +  + weFkh +F++g+ ell +i+r +
  MMETSP0890-20130614|7104_1  30 AFLSKTYSMIDS-LPAHIGGWSEAGDTMVILDSERFASEYIPQYFKHNNFRSFVRQLNFYGFRKLRADAAS-GTGANRWEFKHANFRRGHPELLVQIRRAE 128
                 69*******987.5568889***********************************************9987.6679**********************976 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 7
  PF00447.12  44 yFkhsnfaSFvRQL 57 
                 +F++s++ S++R L
  MMETSP0890-20130614|7104_1 302 TFETSRLDSLIRTL 315
                 79999999999976 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.0   4.4e-06    0.0085      69     142 ..     125     196 ..     114     201 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.4e-06
   PF04156.9  69 eedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikel 142
                 +++e++++     + ++++++ +ele+e+++l++r+ e +  +e+l++ l++l e+l+  e++ +++++s+++ 
  MMETSP0890-20130614|7104_1 125 RRAEHYDY--TAPDAAAQRQRQAELEREVSELRQRVDEMQLVIENLNRMLTSLTEALQTRETNAQNNSHSLERS 196
                 55555555..2337788999********************************************9999999875 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.6   3.1e-05     0.061      26      80 ..     140     195 ..     126     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.1e-05
   PF12718.2  26 leqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae.altr 80 
                   q++++ E+e+++L +++++++  +e+l+  l+  +e+l+  e++++++  +l+r
  MMETSP0890-20130614|7104_1 140 QRQRQAELEREVSELRQRVDEMQLVIENLNRMLTSLTEALQTRETNAQNNShSLER 195
                 679999************************************99999998878887 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.2   3.6e-05      0.07      60     130 ..     139     195 ..     107     207 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.6e-05
   PF10186.4  60 qlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasaqlekrraeqlaklqeeikr 130
                 +++ ++a+ +++ +++r+r+++ +  ie++++ + +l eal++r  +++              + +++++r
  MMETSP0890-20130614|7104_1 139 AQRQRQAELEREVSELRQRVDEMQLVIENLNRMLTSLTEALQTRETNAQ--------------NNSHSLER 195
                 4555555555555555555555555555555555555555555555555..............44444444 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   0.00013      0.25      74     133 ..     144     194 ..     135     204 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
   PF07106.8  74 lnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLe 133
                  ++l+ e++elr+ v e++  i++l+  l +Lt++l+t         ++ + +++++ Le
  MMETSP0890-20130614|7104_1 144 QAELEREVSELRQRVDEMQLVIENLNRMLTSLTEALQT---------RETNAQNNSHSLE 194
                 44555555555555555555555555555555555555.........5555555555444 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.9   0.00024      0.46      20      51 ..     138     169 ..     128     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00024
  PF04977.10  20 yqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                  +++q  a+l++e+ +l+++ +e++  +++L+
  MMETSP0890-20130614|7104_1 138 AAQRQRQAELEREVSELRQRVDEMQLVIENLN 169
                 56788888999999999999999999998883 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.1   0.00045      0.88      15      83 ..     138     207 ..     136     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00045
  PF02465.13  15 aaerapldrlkqqeqkleaklsaygtlksalsdlqsalkalksts.afntkkatssnesvvtatatagaa 83 
                 aa+r+++++l+++ ++l ++ ++++ +   l+ + ++l++  +t  + ++++  s + s +tat+t g a
  MMETSP0890-20130614|7104_1 138 AAQRQRQAELEREVSELRQRVDEMQLVIENLNRMLTSLTEALQTReTNAQNNSHSLERSNITATSTGGSA 207
                 6899999*************************99997766656541444444455567889999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       933  (0.0682417); expected 273.4 (0.02)
Passed bias filter:                      660  (0.0482738); expected 273.4 (0.02)
Passed Vit filter:                       127  (0.00928906); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.47s 00:00:01.29 Elapsed: 00:00:00.97
# Mc/sec: 852.31
//
Query:       MMETSP0890-20130614|7106_1  [L=1469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-14   50.7   0.0    1.4e-13   49.5   0.0    1.7  1  PF12359.3  Protein of unknown function (DUF3645)
    6.8e-14   51.6   0.3    4.6e-09   36.1   0.0    2.9  2  PF13499.1  EF-hand domain pair
    7.8e-10   37.2   0.8     0.0027   16.7   0.1    3.7  3  PF00036.27 EF hand
      5e-09   34.9   5.1      0.006   15.7   0.2    3.6  3  PF13202.1  EF hand
    2.2e-08   33.1   5.5      0.012   15.3   0.2    4.2  3  PF13405.1  EF-hand domain
    2.6e-07   28.9   0.0    4.1e-07   28.2   0.0    1.2  1  PF06101.6  Plant protein of unknown function (DUF946)
    3.7e-05   23.1   1.4        1.1    8.7   0.1    3.6  3  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.025   14.2   0.3      0.039   13.5   0.2    1.3  1  PF05203.11 Hom_end-associated Hint
       0.43    9.5  15.3       0.74    8.7  10.6    1.2  1  PF06213.7  Cobalamin biosynthesis protein CobT
        1.9    8.4  10.5        4.4    7.2   7.3    1.5  1  PF14181.1  YqfQ-like protein
        5.2    6.6  10.1       0.47   10.1   3.6    1.7  2  PF02862.12 DDHD domain
        7.5    4.7  18.7         13    3.9  12.9    1.3  1  PF03344.10 Daxx Family
         10    4.6   5.8         15    4.0   4.0    1.1  1  PF03348.10 Serine incorporator (Serinc)


Domain annotation for each model (and alignments):
>> PF12359.3  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.4e-16   1.4e-13       3      34 .]     222     253 ..     221     253 .. 0.96

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.4e-16
   PF12359.3   3 psRtllAVPYraKDvPserSEFsHpDvvIvLT 34 
                 + R+ lAVP+ +KD P+ +SEFs+pDv+I+LT
  MMETSP0890-20130614|7106_1 222 KGRRYLAVPFAGKDKPTDASEFSNPDVAIGLT 253
                 5799***************************9 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   0.00016      0.16       5      30 ..     891     916 ..     879     941 .. 0.88
   2 !   36.1   0.0   4.4e-12   4.6e-09       4      64 ..    1130    1186 ..    1115    1188 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00016
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlg 30 
                 aF++lD+d +g+ld +e ++ll+ l 
  MMETSP0890-20130614|7106_1 891 AFESLDVDDSGHLDDDEATHLLDILD 916
                 8********************98775 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 4.4e-12
   PF13499.1    4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64  
                  ++F+++D dgdg+l+ +eL   lk l+     +  + ++ ++ ++lD+ngd ++s++Ef +
  MMETSP0890-20130614|7106_1 1130 DCFDTFDIDGDGTLTLAELSGGLKWLL----SRAPPAQVLALARYLDTNGDNLISRSEFDA 1186
                  46*************************....88888899999*****************65 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1     0.008       8.4       5      21 ..     891     907 ..     888     913 .. 0.87
   2 !   16.7   0.1   2.6e-06    0.0027       5      27 ..    1131    1153 ..    1129    1155 .. 0.89
   3 !   10.8   0.0   0.00021      0.22       7      27 ..    1169    1189 ..    1164    1191 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.008
                 HHHHHCTTTSSEBEHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeE 21 
                 aF+ +D+D +G+++ +E
  MMETSP0890-20130614|7106_1 891 AFESLDVDDSGHLDDDE 907
                 8*************999 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 2.6e-06
                  HHHHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27    5 aFkefDkDgdGkIsfeEfkealk 27  
                   F+ fD DgdG++++ E+   lk
  MMETSP0890-20130614|7106_1 1131 CFDTFDIDGDGTLTLAELSGGLK 1153
                  7*****************98887 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00021
                  HHHCTTTSSEBEHHHHHHHHH CS
  PF00036.27    7 kefDkDgdGkIsfeEfkealk 27  
                  + +D++gd  Is +Ef +alk
  MMETSP0890-20130614|7106_1 1169 RYLDTNGDNLISRSEFDAALK 1189
                  679*************99987 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0016       1.6       1      21 [.     888     908 ..     888     912 .. 0.85
   2 !   15.7   0.2   5.7e-06     0.006       3      22 ..    1130    1149 ..    1130    1153 .. 0.90
   3 !   11.7   0.0   0.00011      0.11       8      23 ..    1171    1186 ..    1169    1189 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0016
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 l+++F+ +D++ +G ++ +E 
  MMETSP0890-20130614|7106_1 888 LVSAFESLDVDDSGHLDDDEA 908
                 5678*************9995 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 5.7e-06
                  HHHHHH--S----B-HHHHH CS
   PF13202.1    3 dtFrafDlNgDGkIsreELk 22  
                  d F+ fD +gDG+++  EL+
  MMETSP0890-20130614|7106_1 1130 DCFDTFDIDGDGTLTLAELS 1149
                  579***************97 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00011
                  H--S----B-HHHHHH CS
   PF13202.1    8 fDlNgDGkIsreELkr 23  
                  +D+NgD  Isr+E+ +
  MMETSP0890-20130614|7106_1 1171 LDTNGDNLISRSEFDA 1186
                  8************965 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.3    0.0066       6.9       3      26 ..     889     912 ..     888     916 .. 0.85
   2 !   15.3   0.2   1.1e-05     0.012       4      27 ..    1130    1153 ..    1129    1156 .. 0.89
   3 !   10.4   0.0   0.00044      0.46       7      27 ..    1169    1189 ..    1166    1198 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0066
                 H---GCC-------B---HHHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrdaL 26 
                  +aF+ +D d +G +d +E  ++L
  MMETSP0890-20130614|7106_1 889 VSAFESLDVDDSGHLDDDEATHLL 912
                 589*************99976666 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.1e-05
                  ---GCC-------B---HHHHHHH CS
   PF13405.1    4 eaFklfDkdgdGkidaeELrdaLr 27  
                  ++F+ fD dgdG+++++EL   L+
  MMETSP0890-20130614|7106_1 1130 DCFDTFDIDGDGTLTLAELSGGLK 1153
                  79****************977665 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00044
                  GCC-------B---HHHHHHH CS
   PF13405.1    7 klfDkdgdGkidaeELrdaLr 27  
                  + +D++gd+ i+++E+ +aL+
  MMETSP0890-20130614|7106_1 1169 RYLDTNGDNLISRSEFDAALK 1189
                  579****************98 PP

>> PF06101.6  Plant protein of unknown function (DUF946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.9e-10   4.1e-07     121     175 ..    1352    1406 ..    1335    1426 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.9e-10
   PF06101.6  121 seagyfWlPvppdGykavGlvvttspekPeldevrCvradltdeceasklileve 175 
                  ++  y+W+P pp+ + a+G+v tt+++ P+l+ +rCv + +t  +++ k ++e +
  MMETSP0890-20130614|7106_1 1352 RKNFYVWKPDPPETFIAMGIVATTDDAPPPLETIRCVPKSFTTLSNKAKFMWEPQ 1406
                  4468**********************************************99865 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4      0.11   1.2e+02      21      37 ..     901     918 ..     878     919 .. 0.79
   2 !    8.7   0.1    0.0011       1.1      31      47 ..    1132    1148 ..    1130    1153 .. 0.89
   3 !    8.3   0.0    0.0015       1.5      29      47 ..    1166    1184 ..    1156    1189 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
   PF13833.1  21 g.lseeevdilfrefDtd 37 
                 g l ++e+++l++ +D+d
  MMETSP0890-20130614|7106_1 901 GhLDDDEATHLLDILDLD 918
                 148899999999999987 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0011
   PF13833.1   31 frefDtdgdGkisfeEF 47  
                  f+ fD+dgdG ++++E 
  MMETSP0890-20130614|7106_1 1132 FDTFDIDGDGTLTLAEL 1148
                  899***********996 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0015
   PF13833.1   29 ilfrefDtdgdGkisfeEF 47  
                  +l r +Dt+gd+ is  EF
  MMETSP0890-20130614|7106_1 1166 ALARYLDTNGDNLISRSEF 1184
                  7899**************9 PP

>> PF05203.11  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   3.7e-05     0.039      67     155 ..     700     780 ..     691    1049 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF05203.11  67 HiLvLrtpqnielterklkgkenlakkkesdgraieivkevtksfekekegeeeakeiakefasvsaseeyieveieardfaalspevr 155
                 ++L L+ + + ++++++l+  e+  ++++ d+   ++++e++++ e+e+       e ++e ++++++e+ +e e+e+ d+++ + +  
  MMETSP0890-20130614|7106_1 700 QQLWLHDQVSLQIVNNMLSLVESDHTTSSGDQS-AKLENETEEEAEQEQ-------EQEQEQEQEQEQEQEQEKEVEVDDYEKADYSRE 780
                 578888887888888888888777776666666.444444444444444.......333333344456666788999999999887544 PP

>> PF06213.7  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  10.6   0.00071      0.74     196     262 ..     710     783 ..     686     791 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00071
   PF06213.7 196 arvvrdmlsk..lelaeelgdeeessdseekrd..edddkedeeddaseeeesgdsdslskd...edasseete 262
                  ++v +mls   ++ +  +gd++ + ++e +++  +++++e+e++++ e+e++++++ + +d   +d s e++e
  MMETSP0890-20130614|7106_1 710 LQIVNNMLSLveSDHTTSSGDQSAKLENETEEEaeQEQEQEQEQEQEQEQEQEQEKEVEVDDyekADYSREDEE 783
                 48999998853377888888888877766665311223333333333333333333334444333333333333 PP

>> PF14181.1  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.3    0.0042       4.4      97     146 ..     728     780 ..     712     791 .. 0.46

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0042
   PF14181.1  97 ssde...eteeeeeesteeeekeeeeetktekkekkkkevkkskkekekekee 146
                 s+d+    ++e+eee+++e+e+e+e+e+++e++++++kev+ +  ek+  ++e
  MMETSP0890-20130614|7106_1 728 SGDQsakLENETEEEAEQEQEQEQEQEQEQEQEQEQEKEVEVDDYEKADYSRE 780
                 33334432333333444444444444444445555555544444444443333 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.6   0.00044      0.47      96     174 ..     688     771 ..     644     795 .. 0.62
   2 ?   -3.5   0.1       6.1   6.4e+03     106     123 ..    1197    1214 ..    1157    1248 .. 0.40

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00044
  PF02862.12  96 sltnigkavkqsve.....sltsslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekr 174
                  ++++++++++ ++     ++  ++++ + s +++ ++ +s++++++ e++++++++q++++e+++e+e+e+++e+e++ + ++
  MMETSP0890-20130614|7106_1 688 VISDLKTKIQRYQQlwlhdQVSLQIVNNMLSLVESDHTTSSGDQSAKLENETEEEAEQEQEQEQEQEQEQEQEQEQEKEVEVDD 771
                 555556666555555555555566666666666666666666666666666666665444444444433333333333333322 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 6.1
  PF02862.12  106 qsvesltsslsegiassl 123 
                   s++s+ s++  + + +l
  MMETSP0890-20130614|7106_1 1197 SSSSSSSSQALPSGKPTL 1214
                  222222222222222222 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  12.9     0.012        13     431     485 ..     728     783 ..     704     805 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.012
  PF03344.10 431 sP.llasqeseeeekaekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeed 485
                 s  + a  e e+ee+ae+e+++e+++++e+++++e+e+e+e ++ e++  + e+e+
  MMETSP0890-20130614|7106_1 728 SGdQSAKLENETEEEAEQEQEQEQEQEQEQEQEQEQEKEVEVDDYEKADYSREDEE 783
                 21233344555666666666666655555555555555555555555444444443 PP

>> PF03348.10  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.0     0.014        15     287     358 ..     708     775 ..     681     784 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.014
  PF03348.10 287 liigllltflavlYstlraasnsssgklklsedkveeqkkeernesreeaakaaveegsepksakddekegv 358
                 + + ++  +l+++ s  +++s  +s+kl+ +++  ee+++e+++e+++e+++  ++e++++k++  d+ e+ 
  MMETSP0890-20130614|7106_1 708 VSLQIVNNMLSLVESDHTTSSGDQSAKLENETE--EEAEQEQEQEQEQEQEQ--EQEQEQEKEVEVDDYEKA 775
                 445555555555555555555555555555444..33222222223223333..333333444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1556  (0.113809); expected 273.4 (0.02)
Passed bias filter:                      652  (0.0476887); expected 273.4 (0.02)
Passed Vit filter:                       164  (0.0119953); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 2.93u 0.39s 00:00:03.32 Elapsed: 00:00:01.56
# Mc/sec: 2256.57
//
Query:       MMETSP0890-20130614|7109_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-80  264.8   1.5    2.1e-12   46.6   0.0   10.6 11  PF13041.1  PPR repeat family
    2.9e-67  217.9  13.1    7.3e-06   25.4   0.0   12.2 12  PF01535.15 PPR repeat
    7.6e-57  184.7   0.0    4.7e-06   26.3   0.0   11.6 11  PF13812.1  Pentatricopeptide repeat domain
    5.1e-38  128.1   0.0     0.0064   15.8   0.0   10.9 10  PF12854.2  PPR repeat
    1.5e-16   59.2   5.0         14    6.5   0.0   11.4 12  PF13428.1  Tetratricopeptide repeat
    4.6e-15   54.8  10.6        3.6    8.1   0.0   11.2 11  PF13174.1  Tetratricopeptide repeat
    9.2e-14   51.2  10.2     0.0085   16.0   0.1    6.3  6  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    5.8e-13   48.4   5.5      0.028   14.2   0.0    7.9  8  PF13424.1  Tetratricopeptide repeat
    7.3e-13   48.0   0.0        0.2   10.5   0.0    5.2  5  PF13429.1  Tetratricopeptide repeat
    4.6e-11   41.5  14.9        1.4    8.7   0.0   10.7 11  PF13176.1  Tetratricopeptide repeat
    2.4e-10   40.0   1.1      0.011   15.2   0.1    5.8  5  PF00637.15 Region in Clathrin and VPS
    3.4e-08   33.4   0.0    7.9e-08   32.2   0.0    1.7  1  PF01713.16 Smr domain
    7.4e-08   31.8   5.2        1.1    8.8   0.0    6.6  6  PF13414.1  TPR repeat
    1.1e-07   32.1   0.7        2.9    8.5   0.0    6.5  8  PF13432.1  Tetratricopeptide repeat
    1.1e-06   27.9   0.5        1.8    8.1   0.0    7.1  9  PF04714.8  BCL7, N-terminal conserver region
    2.6e-06   26.7  17.4        3.6    7.6   0.0    9.5 10  PF07719.12 Tetratricopeptide repeat
    5.5e-06   25.9   8.5        6.2    6.7   0.0    8.7  9  PF13374.1  Tetratricopeptide repeat
    0.00034   20.5   0.1        7.4    6.5   0.0    4.8  5  PF12688.2  Tetratrico peptide repeat
     0.0005   19.2   0.6        2.6    7.0   0.1    3.9  5  PF04733.9  Coatomer epsilon subunit
     0.0023   17.4   0.0         30    4.0   0.0    5.5  7  PF12000.3  Gkycosyl transferase family 4 group
     0.0033   17.4   0.0        6.2    6.8   0.0    4.5  3  PF13579.1  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
       0.01   15.7   0.0         14    5.6   0.0    4.3  3  PF08967.5  Domain of unknown function (DUF1884)
      0.016   14.6  11.8         30    4.2   0.0    7.9  9  PF00515.23 Tetratricopeptide repeat
        1.2    9.2   4.3         36    4.5   0.0    4.5  5  PF03704.12 Bacterial transcriptional activator domain


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.071        40      17      48 ..     212     243 ..     204     244 .. 0.89
   2 !   33.5   0.0   4.7e-11   2.7e-08       2      48 ..     232     278 ..     231     280 .. 0.95
   3 !   22.8   0.0     1e-07   5.8e-05       1      30 [.     266     295 ..     266     296 .. 0.93
   4 !   44.1   0.0   2.3e-14   1.3e-11       1      48 [.     297     344 ..     297     345 .. 0.98
   5 !   39.4   0.0   6.9e-13     4e-10       5      48 ..     336     379 ..     333     381 .. 0.96
   6 !   44.3   0.0   1.9e-14   1.1e-11       1      48 [.     367     414 ..     367     416 .. 0.97
   7 !   28.5   0.0   1.8e-09     1e-06       4      48 ..     405     450 ..     405     450 .. 0.96
   8 !   46.6   0.0   3.8e-15   2.1e-12       1      48 [.     438     485 ..     438     487 .. 0.97
   9 ?    5.4   0.0     0.029        17      10      34 ..     482     506 ..     480     507 .. 0.87
  10 !   22.7   0.0   1.1e-07   6.2e-05       1      32 [.     507     538 ..     507     542 .. 0.91
  11 !   38.1   0.0   1.7e-12   9.9e-10       3      48 ..     543     589 ..     539     590 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.071
   PF13041.1  17 gkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 g+ e  +++f++  +rgi  n y  +  i+++
  MMETSP0890-20130614|7109_1 212 GRPERSIQIFEDAMERGIDNNIYMINACISAC 243
                 78888999*********************997 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 4.7e-11
   PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 n+ + N+ Is++ + +++e+A++l++e k rg++P+ +TY+  i+++
  MMETSP0890-20130614|7109_1 232 NIYMINACISACERLRRWEKALDLLEECKVRGLTPTIVTYNACISAC 278
                 78899*****************************************8 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 1e-07
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMk 30 
                 p +vtYN+ Is++ k g++e+A++++n+ k
  MMETSP0890-20130614|7109_1 266 PTIVTYNACISACEKVGQWEKALEILNKVK 295
                 789***********************9866 PP

  == domain 4    score: 44.1 bits;  conditional E-value: 2.3e-14
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 p+v+tYN+ Is++ k g++e A++l++e k rg++P+  +Y+  i+++
  MMETSP0890-20130614|7109_1 297 PDVITYNAAISACEKGGQWERALQLLDEIKNRGLEPSIRSYNASISAC 344
                 8*********************************************97 PP

  == domain 5    score: 39.4 bits;  conditional E-value: 6.9e-13
   PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 +YN+ Is++ k g+++ A++l++e k+r+++P+v+TY+  i+++
  MMETSP0890-20130614|7109_1 336 SYNASISACEKCGHWRRALQLLSELKRRKLEPTVITYNACISAC 379
                 8******************************************8 PP

  == domain 6    score: 44.3 bits;  conditional E-value: 1.9e-14
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 p v+tYN+ Is++ k g++e A++l+ne +  +i+P+ +T+s  i+++
  MMETSP0890-20130614|7109_1 367 PTVITYNACISACEKGGQWERALRLLNELRNDEIEPDIITFSAAISAC 414
                 78*********************************************8 PP

  == domain 7    score: 28.5 bits;  conditional E-value: 1.8e-09
   PF13041.1   4 vtYNtlIsglckkgkveeAfklfneMk.krgikPnvyTYsilikgl 48 
                 +t+ + Is++ k g++e+A++lf+e + kr+++P+ + ++++i+++
  MMETSP0890-20130614|7109_1 405 ITFSAAISACEKGGQWEKALDLFSELRdKRKLEPDIILFNSVISAC 450
                 5999***********************8899*************97 PP

  == domain 8    score: 46.6 bits;  conditional E-value: 3.8e-15
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                 p+++ +N++Is++ k g++e A++l++e k+ g+kP+v+TYs  i+++
  MMETSP0890-20130614|7109_1 438 PDIILFNSVISACEKGGQWERALDLLDELKQYGLKPDVITYSAAISAC 485
                 899********************************************8 PP

  == domain 9    score: 5.4 bits;  conditional E-value: 0.029
   PF13041.1  10 IsglckkgkveeAfklfneMkkrgi 34 
                 Is++ k  ++ +A++l++e k++g+
  MMETSP0890-20130614|7109_1 482 ISACEKGLRWTKALELLDEVKRKGR 506
                 777788889**************96 PP

  == domain 10    score: 22.7 bits;  conditional E-value: 1.1e-07
   PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkr 32 
                 p+v+tYN+ +s++ k g++ +A+klf+e +  
  MMETSP0890-20130614|7109_1 507 PDVITYNAAMSACEKCGEFGKALKLFQEVRNQ 538
                 8**************************97765 PP

  == domain 11    score: 38.1 bits;  conditional E-value: 1.7e-12
   PF13041.1   3 vvtYNtlIsglckkgkveeAfklfneMk.krgikPnvyTYsilikgl 48 
                 ++tYN+ Is+l k+g+++e ++l++e   ++++kPnv+TY  +i+g+
  MMETSP0890-20130614|7109_1 543 IITYNVAISALEKMGHWQECIQLLEEATkEKKLKPNVITYCLMISGY 589
                 79************************993579*************97 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1   6.2e+02      14      31 .]     212     229 ..     208     229 .. 0.93
   2 !   17.1   0.1   6.1e-06    0.0035       4      31 .]     237     264 ..     234     264 .. 0.93
   3 !   24.2   0.0   3.2e-08   1.8e-05       1      27 [.     269     295 ..     269     299 .. 0.93
   4 !   25.4   0.0   1.3e-08   7.3e-06       1      31 []     300     330 ..     300     330 .. 0.96
   5 !   15.7   0.0   1.6e-05    0.0093       2      30 ..     336     364 ..     335     365 .. 0.93
   6 !   23.3   0.0   6.1e-08   3.5e-05       1      29 [.     370     398 ..     370     400 .. 0.93
   7 !   21.2   0.0   2.9e-07   0.00016       1      29 [.     405     433 ..     405     434 .. 0.94
   8 !   24.0   0.0   3.7e-08   2.1e-05       2      31 .]     442     471 ..     441     471 .. 0.94
   9 !   17.5   0.0   4.5e-06    0.0025       1      30 [.     476     505 ..     476     506 .. 0.97
  10 !   20.5   0.0   4.9e-07   0.00028       1      27 [.     510     536 ..     510     539 .. 0.93
  11 !   15.7   0.0   1.6e-05    0.0093       1      26 [.     544     569 ..     544     573 .. 0.92
  12 !    8.1   0.0    0.0043       2.5       1      30 [.     580     609 ..     580     610 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.1
  PF01535.15  14 GkleeAlelfkeMkekGv 31 
                 G++e  +++f++  e+G+
  MMETSP0890-20130614|7109_1 212 GRPERSIQIFEDAMERGI 229
                 99**********999997 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 6.1e-06
  PF01535.15   4 nslIsgyckaGkleeAlelfkeMkekGv 31 
                 n+ Is++ + +++e+Al+l++e k +G+
  MMETSP0890-20130614|7109_1 237 NACISACERLRRWEKALDLLEECKVRGL 264
                 99*********************99996 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 3.2e-08
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMk 27 
                 vtyn+ Is++ k G++e+Ale++++ k
  MMETSP0890-20130614|7109_1 269 VTYNACISACEKVGQWEKALEILNKVK 295
                 8**********************9977 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 1.3e-08
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                 +tyn+ Is++ k G++e Al+l++e+k +G+
  MMETSP0890-20130614|7109_1 300 ITYNAAISACEKGGQWERALQLLDEIKNRGL 330
                 69**************************996 PP

  == domain 5    score: 15.7 bits;  conditional E-value: 1.6e-05
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekG 30 
                 +yn+ Is++ k+G ++ Al+l+ e+k++ 
  MMETSP0890-20130614|7109_1 336 SYNASISACEKCGHWRRALQLLSELKRRK 364
                 89999*********************985 PP

  == domain 6    score: 23.3 bits;  conditional E-value: 6.1e-08
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkek 29 
                 +tyn+ Is++ k G++e Al+l++e++ +
  MMETSP0890-20130614|7109_1 370 ITYNACISACEKGGQWERALRLLNELRND 398
                 69***********************9976 PP

  == domain 7    score: 21.2 bits;  conditional E-value: 2.9e-07
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkek 29 
                 +t+++ Is++ k G++e+Al+lf e+++k
  MMETSP0890-20130614|7109_1 405 ITFSAAISACEKGGQWEKALDLFSELRDK 433
                 69***********************9986 PP

  == domain 8    score: 24.0 bits;  conditional E-value: 3.7e-08
  PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +ns+Is++ k G++e Al+l++e+k+ G+
  MMETSP0890-20130614|7109_1 442 LFNSVISACEKGGQWERALDLLDELKQYGL 471
                 59************************9985 PP

  == domain 9    score: 17.5 bits;  conditional E-value: 4.5e-06
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekG 30 
                 +ty++ Is++ k  ++ +Alel++e k+kG
  MMETSP0890-20130614|7109_1 476 ITYSAAISACEKGLRWTKALELLDEVKRKG 505
                 69**************************99 PP

  == domain 10    score: 20.5 bits;  conditional E-value: 4.9e-07
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMk 27 
                 +tyn+ +s++ k+G++ +Al+lf+e +
  MMETSP0890-20130614|7109_1 510 ITYNAAMSACEKCGEFGKALKLFQEVR 536
                 69**********************987 PP

  == domain 11    score: 15.7 bits;  conditional E-value: 1.6e-05
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeM 26 
                 +tyn+ Is++ k G ++e+++l++e 
  MMETSP0890-20130614|7109_1 544 ITYNVAISALEKMGHWQECIQLLEEA 569
                 69*********************995 PP

  == domain 12    score: 8.1 bits;  conditional E-value: 0.0043
  PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekG 30 
                 +ty  +Isgy    +   A ++f+  +  G
  MMETSP0890-20130614|7109_1 580 ITYCLMISGYEVREDTARARSMFDAAQNAG 609
                 69*********************9766666 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.76   4.3e+02      11      30 ..     208     227 ..     203     230 .. 0.78
   2 !   11.7   0.0   0.00039      0.22       5      34 .]     237     266 ..     234     266 .. 0.94
   3 !   13.9   0.0     8e-05     0.045       2      26 ..     269     293 ..     268     296 .. 0.91
   4 !   25.6   0.0   1.4e-08   7.7e-06       1      34 []     299     332 ..     299     332 .. 0.97
   5 !   19.1   0.0   1.6e-06   0.00093       2      34 .]     335     367 ..     334     367 .. 0.96
   6 !   20.0   0.0   8.6e-07   0.00049       1      34 []     369     402 ..     369     402 .. 0.94
   7 !   15.8   0.0   1.9e-05     0.011       2      34 .]     405     438 ..     404     438 .. 0.89
   8 !   26.3   0.0   8.3e-09   4.7e-06       3      34 .]     442     473 ..     440     473 .. 0.96
   9 !    7.8   0.0    0.0071       4.1       1      31 [.     475     505 ..     475     507 .. 0.94
  10 !   15.6   0.0   2.2e-05     0.013       1      31 [.     509     539 ..     509     542 .. 0.93
  11 !   10.8   0.0   0.00075      0.43       2      29 ..     544     571 ..     543     577 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.76
   PF13812.1  11 laksgrpeaAlallee.Meqq 30 
                 l  +grpe+  +++e+ Me +
  MMETSP0890-20130614|7109_1 208 LRTFGRPERSIQIFEDaME-R 227
                 5679***********9554.4 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00039
   PF13812.1   5 ntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 n+ i a+ +  r+e+Al+llee + +g++P
  MMETSP0890-20130614|7109_1 237 NACISACERLRRWEKALDLLEECKVRGLTP 266
                 88999**********************998 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 8e-05
   PF13812.1   2 etyntlitalaksgrpeaAlallee 26 
                 +tyn+ i a+ k g++e+Al++l+ 
  MMETSP0890-20130614|7109_1 269 VTYNACISACEKVGQWEKALEILNK 293
                 8*********************975 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 1.4e-08
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 v+tyn+ i a+ k g++e+Al+ll+e +++g++P
  MMETSP0890-20130614|7109_1 299 VITYNAAISACEKGGQWERALQLLDEIKNRGLEP 332
                 57******************************99 PP

  == domain 5    score: 19.1 bits;  conditional E-value: 1.6e-06
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 ++yn+ i a+ k+g++ +Al+ll+e+++++++P
  MMETSP0890-20130614|7109_1 335 RSYNASISACEKCGHWRRALQLLSELKRRKLEP 367
                 79***************************9998 PP

  == domain 6    score: 20.0 bits;  conditional E-value: 8.6e-07
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 v+tyn+ i a+ k g++e+Al+ll+e+++  ++P
  MMETSP0890-20130614|7109_1 369 VITYNACISACEKGGQWERALRLLNELRNDEIEP 402
                 57*************************9988877 PP

  == domain 7    score: 15.8 bits;  conditional E-value: 1.9e-05
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqq.gvkP 34 
                 +t+++ i a+ k g++e+Al+l++e++++ +++P
  MMETSP0890-20130614|7109_1 405 ITFSAAISACEKGGQWEKALDLFSELRDKrKLEP 438
                 69*************************8525776 PP

  == domain 8    score: 26.3 bits;  conditional E-value: 8.3e-09
   PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                 ++n++i a+ k g++e+Al+ll+e++q+g+kP
  MMETSP0890-20130614|7109_1 442 LFNSVISACEKGGQWERALDLLDELKQYGLKP 473
                 79*****************************9 PP

  == domain 9    score: 7.8 bits;  conditional E-value: 0.0071
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqg 31 
                 v+ty++ i a+ k  r+ +Al+ll+e +++g
  MMETSP0890-20130614|7109_1 475 VITYSAAISACEKGLRWTKALELLDEVKRKG 505
                 57************************99987 PP

  == domain 10    score: 15.6 bits;  conditional E-value: 2.2e-05
   PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqg 31 
                 v+tyn+ + a+ k+g++ +Al+l+ e ++q+
  MMETSP0890-20130614|7109_1 509 VITYNAAMSACEKCGEFGKALKLFQEVRNQN 539
                 57************************99987 PP

  == domain 11    score: 10.8 bits;  conditional E-value: 0.00075
   PF13812.1   2 etyntlitalaksgrpeaAlalleeMeq 29 
                 +tyn  i al k+g+++++ +llee ++
  MMETSP0890-20130614|7109_1 544 ITYNVAISALEKMGHWQECIQLLEEATK 571
                 69**********************9555 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.8e-05     0.027       1      32 [.     262     293 ..     262     295 .. 0.95
   2 !   15.8   0.0   1.1e-05    0.0064       5      32 ..     297     324 ..     296     326 .. 0.96
   3 !    6.9   0.0    0.0068       3.9       1      32 [.     328     359 ..     328     361 .. 0.95
   4 !   14.3   0.0   3.3e-05     0.019       2      33 ..     364     395 ..     363     396 .. 0.94
   5 !    9.4   0.0    0.0011      0.62       3      32 ..     400     429 ..     398     431 .. 0.93
   6 !   12.7   0.0    0.0001     0.059       2      33 ..     435     466 ..     434     467 .. 0.94
   7 !   11.6   0.0   0.00023      0.13       2      32 ..     470     500 ..     469     502 .. 0.83
   8 !   12.4   0.0   0.00012     0.071       4      32 ..     506     534 ..     503     536 .. 0.94
   9 ?    4.7   0.0     0.033        19       7      32 ..     543     568 ..     540     570 .. 0.91
  10 !   11.5   0.0   0.00024      0.14       2      17 ..     574     589 ..     573     603 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-05
   PF12854.2   1 kGlkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                 +Gl P++vTYN  I++  + G  ++A+e+l++
  MMETSP0890-20130614|7109_1 262 RGLTPTIVTYNACISACEKVGQWEKALEILNK 293
                 69***************************986 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.1e-05
   PF12854.2   5 PdvvTYNtLIdGlCraGrvdeAvellde 32 
                 Pdv+TYN  I++  + G  ++A++llde
  MMETSP0890-20130614|7109_1 297 PDVITYNAAISACEKGGQWERALQLLDE 324
                 ***************************9 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0068
   PF12854.2   1 kGlkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                 +Gl+P + +YN  I++  + G+  +A++ll e
  MMETSP0890-20130614|7109_1 328 RGLEPSIRSYNASISACEKCGHWRRALQLLSE 359
                 69****************************98 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 3.3e-05
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  l+P+v+TYN  I++  + G  ++A++ll+e 
  MMETSP0890-20130614|7109_1 364 KLEPTVITYNACISACEKGGQWERALRLLNEL 395
                 689**************************995 PP

  == domain 5    score: 9.4 bits;  conditional E-value: 0.0011
   PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                 ++Pd++T++  I++  + G  ++A+ l+ e
  MMETSP0890-20130614|7109_1 400 IEPDIITFSAAISACEKGGQWEKALDLFSE 429
                 79**************************98 PP

  == domain 6    score: 12.7 bits;  conditional E-value: 0.0001
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  l+Pd++ +N++I++  + G  ++A+ llde 
  MMETSP0890-20130614|7109_1 435 KLEPDIILFNSVISACEKGGQWERALDLLDEL 466
                 689***************************95 PP

  == domain 7    score: 11.6 bits;  conditional E-value: 0.00023
   PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                 GlkPdv+TY+  I++  +  r  +A+ellde
  MMETSP0890-20130614|7109_1 470 GLKPDVITYSAAISACEKGLRWTKALELLDE 500
                 99***********996666678888888887 PP

  == domain 8    score: 12.4 bits;  conditional E-value: 0.00012
   PF12854.2   4 kPdvvTYNtLIdGlCraGrvdeAvellde 32 
                 +Pdv+TYN   ++  + G   +A++l+ e
  MMETSP0890-20130614|7109_1 506 RPDVITYNAAMSACEKCGEFGKALKLFQE 534
                 7**************************98 PP

  == domain 9    score: 4.7 bits;  conditional E-value: 0.033
   PF12854.2   7 vvTYNtLIdGlCraGrvdeAvellde 32 
                 ++TYN  I++l + G+  e ++ll+e
  MMETSP0890-20130614|7109_1 543 IITYNVAISALEKMGHWQECIQLLEE 568
                 79*************99999999998 PP

  == domain 10    score: 11.5 bits;  conditional E-value: 0.00024
   PF12854.2   2 GlkPdvvTYNtLIdGl 17 
                  lkP+v+TY  +I+G+
  MMETSP0890-20130614|7109_1 574 KLKPNVITYCLMISGY 589
                 69*************9 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.36   2.1e+02      11      30 ..     208     227 ..     198     231 .. 0.84
   2 ?    3.8   0.0      0.17     1e+02       9      27 ..     241     259 ..     236     266 .. 0.88
   3 ?    6.5   0.0     0.024        14       8      34 ..     275     299 ..     269     305 .. 0.82
   4 ?    6.0   0.0     0.036        21       4      27 ..     302     325 ..     299     335 .. 0.85
   5 ?    2.2   0.0      0.58   3.3e+02       9      27 ..     342     360 ..     335     372 .. 0.81
   6 ?    5.8   0.0      0.04        23       7      27 ..     375     395 ..     369     404 .. 0.82
   7 ?    5.0   0.0     0.076        43       6      32 ..     409     435 ..     405     443 .. 0.79
   8 ?    4.7   0.0      0.09        51       9      27 ..     448     466 ..     442     482 .. 0.81
   9 ?   -0.4   0.0       4.2   2.4e+03      16      35 ..     490     510 ..     473     519 .. 0.67
  10 ?    4.0   0.0      0.16        89       4      29 ..     512     537 ..     509     546 .. 0.82
  11 ?    5.8   0.0     0.042        24       8      29 ..     550     571 ..     544     578 .. 0.86
  12 ?   -0.5   0.0       4.5   2.6e+03       8      27 ..     586     605 ..     580     609 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.36
   PF13428.1  11 llalGdpdeAiallrralal 30 
                 l+  G+p++ i+ +++a ++
  MMETSP0890-20130614|7109_1 208 LRTFGRPERSIQIFEDAMER 227
                 7889************9776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.17
   PF13428.1   9 rallalGdpdeAiallrra 27 
                  a+++l ++++A++ll++ 
  MMETSP0890-20130614|7109_1 241 SACERLRRWEKALDLLEEC 259
                 6899************985 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.024
   PF13428.1   8 arallalGdpdeAiallrralalaPdd 34 
                   a++  G++++A++ l+++  ++Pd 
  MMETSP0890-20130614|7109_1 275 ISACEKVGQWEKALEILNKV--KDPDV 299
                 6788999************9..88885 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.036
   PF13428.1   4 llalarallalGdpdeAiallrra 27 
                 + a   a++  G++++A++ll+++
  MMETSP0890-20130614|7109_1 302 YNAAISACEKGGQWERALQLLDEI 325
                 5677889999***********986 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.58
   PF13428.1   9 rallalGdpdeAiallrra 27 
                  a++  G++ +A++ll ++
  MMETSP0890-20130614|7109_1 342 SACEKCGHWRRALQLLSEL 360
                 678899**********997 PP

  == domain 6    score: 5.8 bits;  conditional E-value: 0.04
   PF13428.1   7 larallalGdpdeAiallrra 27 
                    a++  G++++A++ll+++
  MMETSP0890-20130614|7109_1 375 CISACEKGGQWERALRLLNEL 395
                 56788999***********97 PP

  == domain 7    score: 5.0 bits;  conditional E-value: 0.076
   PF13428.1   6 alarallalGdpdeAiallrralalaP 32 
                 a   a++  G++++A++l+ ++  +  
  MMETSP0890-20130614|7109_1 409 AAISACEKGGQWEKALDLFSELRDKRK 435
                 566789999**********99976655 PP

  == domain 8    score: 4.7 bits;  conditional E-value: 0.09
   PF13428.1   9 rallalGdpdeAiallrra 27 
                  a++  G++++A++ll+++
  MMETSP0890-20130614|7109_1 448 SACEKGGQWERALDLLDEL 466
                 577889**********997 PP

  == domain 9    score: -0.4 bits;  conditional E-value: 4.2
   PF13428.1  16 dpdeAiallrralala.Pdda 35 
                 ++ +A++ll+++ +++ Pd  
  MMETSP0890-20130614|7109_1 490 RWTKALELLDEVKRKGrPDVI 510
                 7999*****999666435554 PP

  == domain 10    score: 4.0 bits;  conditional E-value: 0.16
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 + a   a++  G++ +A++l++++  
  MMETSP0890-20130614|7109_1 512 YNAAMSACEKCGEFGKALKLFQEVRN 537
                 5667789999************9844 PP

  == domain 11    score: 5.8 bits;  conditional E-value: 0.042
   PF13428.1   8 arallalGdpdeAiallrrala 29 
                   al+ +G+++e i+ll++a +
  MMETSP0890-20130614|7109_1 550 ISALEKMGHWQECIQLLEEATK 571
                 57999**************965 PP

  == domain 12    score: -0.5 bits;  conditional E-value: 4.5
   PF13428.1   8 arallalGdpdeAiallrra 27 
                    ++ ++d+++A+ ++++a
  MMETSP0890-20130614|7109_1 586 ISGYEVREDTARARSMFDAA 605
                 5568889999****999998 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       2.4   1.3e+03       6      27 ..     205     225 ..     202     227 .. 0.78
   2 ?    0.5   0.0       1.6   9.2e+02      11      25 ..     244     258 ..     241     261 .. 0.81
   3 ?    5.2   0.0     0.052        30      11      26 ..     279     294 ..     271     296 .. 0.80
   4 !    8.1   0.0    0.0063       3.6       4      28 ..     302     327 ..     300     328 .. 0.84
   5 ?   -0.6   0.0       3.8   2.1e+03      14      28 ..     348     362 ..     337     363 .. 0.79
   6 ?    7.1   0.0     0.014       7.7      10      28 ..     379     397 ..     372     398 .. 0.83
   7 !    7.6   0.0    0.0093       5.3      10      29 ..     414     433 ..     407     434 .. 0.79
   8 ?    5.5   0.0     0.042        24      10      27 ..     450     467 ..     442     469 .. 0.84
   9 ?    2.1   0.0      0.52     3e+02       9      29 ..     483     504 ..     477     508 .. 0.73
  10 ?    4.3   0.0       0.1        57       4      29 ..     512     538 ..     510     540 .. 0.89
  11 ?    5.5   0.0     0.043        24       4      28 ..     546     571 ..     545     572 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAlealerli 27 
                 +++++  + +++++++++e+  
  MMETSP0890-20130614|7109_1 205 MGRLRTFG-RPERSIQIFEDAM 225
                 67777767.9********9876 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHH CS
   PF13174.1  11 yklgdtdeAlealer 25 
                 ++l ++++Al++le+
  MMETSP0890-20130614|7109_1 244 ERLRRWEKALDLLEE 258
                 45669********97 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHH CS
   PF13174.1  11 yklgdtdeAlealerl 26 
                 +k g++++Ale+l+++
  MMETSP0890-20130614|7109_1 279 EKVGQWEKALEILNKV 294
                 4557**********98 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0063
                 HHHHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyk.lgdtdeAlealerlik 28 
                 y++a s  + +g++++Al++l+++ +
  MMETSP0890-20130614|7109_1 302 YNAAISACEkGGQWERALQLLDEIKN 327
                 888977777699*********99865 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHH CS
   PF13174.1  14 gdtdeAlealerlik 28 
                 g++++Al++l +l +
  MMETSP0890-20130614|7109_1 348 GHWRRALQLLSELKR 362
                 599******999865 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyklgdtdeAlealerlik 28 
                  +k+g++++Al++l++l++
  MMETSP0890-20130614|7109_1 379 CEKGGQWERALRLLNELRN 397
                 45699***********986 PP

  == domain 7    score: 7.6 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyklgdtdeAlealerlike 29 
                  +k+g++++Al+++ +l+++
  MMETSP0890-20130614|7109_1 414 CEKGGQWEKALDLFSELRDK 433
                 45699**********99876 PP

  == domain 8    score: 5.5 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyklgdtdeAlealerli 27 
                  +k+g++++Al++l++l 
  MMETSP0890-20130614|7109_1 450 CEKGGQWERALDLLDELK 467
                 46799*********9985 PP

  == domain 9    score: 2.1 bits;  conditional E-value: 0.52
                 HHHHHH.HHHHHHHHHHHHHHH CS
   PF13174.1   9 syyklg.dtdeAlealerlike 29 
                 s  + g ++++Ale+l+++ ++
  MMETSP0890-20130614|7109_1 483 SACEKGlRWTKALELLDEVKRK 504
                 44444449*********99776 PP

  == domain 10    score: 4.3 bits;  conditional E-value: 0.1
                 HHHHHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyykl.gdtdeAlealerlike 29 
                 y++a+s  +  g++ +Al+++++++++
  MMETSP0890-20130614|7109_1 512 YNAAMSACEKcGEFGKALKLFQEVRNQ 538
                 899999998778************987 PP

  == domain 11    score: 5.5 bits;  conditional E-value: 0.043
                 HHHHHHHHH.HHHHHHHHHHHHHHHH CS
   PF13174.1   4 yklalsyyk.lgdtdeAlealerlik 28 
                 y+ a s ++ +g+++e +++le+  k
  MMETSP0890-20130614|7109_1 546 YNVAISALEkMGHWQECIQLLEEATK 571
                 7888888877************9877 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0093       5.3      39      84 .]     212     259 ..     210     259 .. 0.73
   2 !    9.9   0.1    0.0012      0.68      39      83 ..     247     293 ..     245     294 .. 0.85
   3 !    9.9   0.0    0.0012      0.71      38      83 ..     312     359 ..     295     360 .. 0.82
   4 !    8.5   0.0    0.0033       1.9      38      83 ..     382     429 ..     371     430 .. 0.76
   5 ?    6.0   0.0     0.021        12      39      83 ..     454     500 ..     447     501 .. 0.87
   6 !   16.0   0.1   1.5e-05    0.0085      37      84 .]     521     569 ..     508     569 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0093
                 --HHHHHHHHHC...TSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHHHH CS
   PF12895.2  39 geykrAyellrk...leldssslgcryll.A..rcllklgkydeAiavLeka 84 
                 g+++r ++++++          +   y++ A   +++ l ++++A+++Le++
  MMETSP0890-20130614|7109_1 212 GRPERSIQIFEDameR----GIDNNIYMInAciSACERLRRWEKALDLLEEC 259
                 5677888888654322....223445888678899**************985 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0012
                 --HHHHHHHHHCTSHCHCBHHHHHHHH..HHHHHTT-HHHHCCCHHH CS
   PF12895.2  39 geykrAyellrkleldssslgcryllA..rcllklgkydeAiavLek 83 
                  ++++A++ll++ +++  ++++    A   +++k g++++A+++L+k
  MMETSP0890-20130614|7109_1 247 RRWEKALDLLEECKVRGLTPTIVTYNAciSACEKVGQWEKALEILNK 293
                 6899******99999998866666667889***************98 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0012
                 ---HHHHHHHHHCTSHCHCBHHHHHHHH..HHHHHTT-HHHHCCCHHH CS
   PF12895.2  38 ngeykrAyellrkleldssslgcryllA..rcllklgkydeAiavLek 83 
                  g+++rA++ll++ +++   + +r   A   +++k+g +  A+++L +
  MMETSP0890-20130614|7109_1 312 GGQWERALQLLDEIKNRGLEPSIRSYNAsiSACEKCGHWRRALQLLSE 359
                 58*********9955555555777777778**************9986 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0033
                 ---HHHHHHHHHCTSHCHCBHHHHHHHH..HHHHHTT-HHHHCCCHHH CS
   PF12895.2  38 ngeykrAyellrkleldssslgcryllA..rcllklgkydeAiavLek 83 
                  g+++rA+ ll++l +d+  +++    A   +++k g++++A++++ +
  MMETSP0890-20130614|7109_1 382 GGQWERALRLLNELRNDEIEPDIITFSAaiSACEKGGQWEKALDLFSE 429
                 59*********6655555333444433449*************99875 PP

  == domain 5    score: 6.0 bits;  conditional E-value: 0.021
                 --HHHHHHHHHC.TSHCHCBHHHHHHHH.HHHHHTT-HHHHCCCHHH CS
   PF12895.2  39 geykrAyellrk.leldssslgcryllA.rcllklgkydeAiavLek 83 
                 g+++rA++ll++ +++  + + + y +A  +++k  ++ +A+++L++
  MMETSP0890-20130614|7109_1 454 GQWERALDLLDElKQYGLKPDVITYSAAiSACEKGLRWTKALELLDE 500
                 9*********997777778899999998899999999*****99986 PP

  == domain 6    score: 16.0 bits;  conditional E-value: 1.5e-05
                 H---HHHHHHHHHC.TSHCHCBHHHHHHHH.HHHHHTT-HHHHCCCHHHH CS
   PF12895.2  37 lngeykrAyellrk.leldssslgcryllA.rcllklgkydeAiavLeka 84 
                 + ge+ +A++l+++  +++ s+  + y  A  +l+k+g ++e+i++Le+a
  MMETSP0890-20130614|7109_1 521 KCGEFGKALKLFQEvRNQNRST-IITYNVAiSALEKMGHWQECIQLLEEA 569
                 579*********8854444444.56664445****************985 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.5   8.5e+02      15      34 ..     208     227 ..     202     232 .. 0.78
   2 !   14.2   0.0   4.9e-05     0.028      13      72 ..     241     294 ..     228     296 .. 0.83
   3 ?    2.1   0.0      0.28   1.6e+02       7      31 ..     301     325 ..     296     332 .. 0.71
   4 !    8.6   0.0    0.0027       1.5      27      71 ..     349     394 ..     348     397 .. 0.87
   5 ?    2.4   0.0      0.24   1.4e+02      16      36 ..     415     435 ..     405     466 .. 0.55
   6 ?    0.7   0.0      0.77   4.4e+02      13      34 ..     448     469 ..     439     485 .. 0.79
   7 !    8.6   0.0    0.0027       1.5      30      75 ..     493     538 ..     487     541 .. 0.85
   8 ?    5.0   0.0     0.037        21       5      32 ..     543     570 ..     537     606 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.5
   PF13424.1  15 lrrlgdydeAlelyekalel 34 
                 lr  g+ +++++++e a+e 
  MMETSP0890-20130614|7109_1 208 LRTFGRPERSIQIFEDAMER 227
                 67788999999999988875 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 4.9e-05
   PF13424.1  13 lvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  +++rl+++++Al+l+e++     + g   p t +++n +  ++++ g+ ++Ale l+k+
  MMETSP0890-20130614|7109_1 241 SACERLRRWEKALDLLEECK----VRG-LTP-TIVTYNACISACEKVGQWEKALEILNKV 294
                 4568**************97....334.345.799**********************997 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.28
   PF13424.1   7 ilnnlalvlrrlgdydeAlelyeka 31 
                 ++n    ++++ g++++Al+l+ + 
  MMETSP0890-20130614|7109_1 301 TYNAAISACEKGGQWERALQLLDEI 325
                 4555556667889999999888775 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0027
   PF13424.1  27 lyekalellrelgddh.pdtaralnnlanlylalgdydeAleylek 71 
                 + ++al+ll+el+++    t+ ++n +  ++++ g+ + Al++l++
  MMETSP0890-20130614|7109_1 349 HWRRALQLLSELKRRKlEPTVITYNACISACEKGGQWERALRLLNE 394
                 579*********9864135899*********************987 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.24
   PF13424.1  16 rrlgdydeAlelyekalellr 36 
                 ++ g++++Al+l+ +  + ++
  MMETSP0890-20130614|7109_1 415 EKGGQWEKALDLFSELRDKRK 435
                 556777777777766555443 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.77
   PF13424.1  13 lvlrrlgdydeAlelyekalel 34 
                  ++++ g++++Al+l+ +  + 
  MMETSP0890-20130614|7109_1 448 SACEKGGQWERALDLLDELKQY 469
                 5667889999999999887665 PP

  == domain 7    score: 8.6 bits;  conditional E-value: 0.0027
   PF13424.1  30 kalellrelgd.dhpdtaralnnlanlylalgdydeAleylekAlei 75 
                 kalell e+++   pd + ++n    ++++ g++ +Al++++++ + 
  MMETSP0890-20130614|7109_1 493 KALELLDEVKRkGRPD-VITYNAAMSACEKCGEFGKALKLFQEVRNQ 538
                 8999988887635799.78***********************98765 PP

  == domain 8    score: 5.0 bits;  conditional E-value: 0.037
   PF13424.1   5 atilnnlalvlrrlgdydeAlelyekal 32 
                  +++n    +l+++g ++e+++l+e+a 
  MMETSP0890-20130614|7109_1 543 IITYNVAISALEKMGHWQECIQLLEEAT 570
                 456766668888*************995 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00042      0.24      91     172 ..     212     294 ..     205     298 .. 0.86
   2 !    7.2   0.0    0.0035         2     109     171 ..     298     359 ..     293     371 .. 0.89
   3 !   10.5   0.0   0.00036       0.2     113     171 ..     372     429 ..     362     441 .. 0.87
   4 ?    2.7   0.0     0.084        48     112     172 ..     442     501 ..     435     514 .. 0.88
   5 !   10.3   0.0    0.0004      0.23     111     172 ..     544     605 ..     523     622 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00042
   PF13429.1  91 aepkdAarlaleayrr..yksprlLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrra 172
                  +p++++++ ++a +r  + + ++ ++ +   er++ +++  +ll++ + +  +     ++ a +++ ++ gq++kAl++l+++
  MMETSP0890-20130614|7109_1 212 GRPERSIQIFEDAMERgiDNNIYMINACISACERLRRWEKALDLLEECKVRG-LTPTIVTYNACISACEKVGQWEKALEILNKV 294
                 6899999999999999333455677899*******************77666.999***********************99875 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0035
   PF13429.1 109 sprlLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrr 171
                 ++  +++a+   e+ ++++r  +ll +++++  +e s   + a +++ ++ g++ +Al+ll++
  MMETSP0890-20130614|7109_1 298 DVITYNAAISACEKGGQWERALQLLDEIKNRG-LEPSIRSYNASISACEKCGHWRRALQLLSE 359
                 6678899********************99888.**************************9986 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00036
   PF13429.1 113 LqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrr 171
                 +++ +   e+ ++++r  +ll++l ++e +e +  +++a +++ ++ gq++kAl l+++
  MMETSP0890-20130614|7109_1 372 YNACISACEKGGQWERALRLLNELRNDE-IEPDIITFSAAISACEKGGQWEKALDLFSE 429
                 667788899999***********88877.9************************99987 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.084
   PF13429.1 112 lLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrra 172
                 l++s +   e+ ++++r  +ll +l++   ++ +  +++a +++ ++  ++ kAl+ll+++
  MMETSP0890-20130614|7109_1 442 LFNSVISACEKGGQWERALDLLDELKQYG-LKPDVITYSAAISACEKGLRWTKALELLDEV 501
                 5678889999999***********99887.99************************99986 PP

  == domain 5    score: 10.3 bits;  conditional E-value: 0.0004
   PF13429.1 111 rlLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrra 172
                   ++ a+  le+++ +++  +ll++++++++++ +  ++ ++++ ++ + ++++A  +++ a
  MMETSP0890-20130614|7109_1 544 ITYNVAISALEKMGHWQECIQLLEEATKEKKLKPNVITYCLMISGYEVREDTARARSMFDAA 605
                 457789**********************************************9999988776 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.4   1.4e+03      10      30 ..     209     227 ..     203     232 .. 0.78
   2 !    8.7   0.0    0.0025       1.4       7      24 ..     241     258 ..     237     263 .. 0.92
   3 !    7.2   0.0    0.0077       4.4       2      23 ..     271     292 ..     270     298 .. 0.83
   4 ?    3.9   0.1     0.088        50       2      22 ..     302     322 ..     301     325 .. 0.81
   5 ?    2.3   0.0      0.28   1.6e+02       7      22 ..     342     357 ..     336     363 .. 0.85
   6 ?    3.9   0.1     0.085        48       2      22 ..     372     392 ..     371     398 .. 0.84
   7 ?    3.5   0.0      0.12        67       7      22 ..     412     427 ..     407     433 .. 0.89
   8 ?    3.1   0.0      0.16        90       8      23 ..     449     464 ..     447     472 .. 0.88
   9 ?   -0.7   0.0       2.7   1.5e+03      15      29 ..     478     490 ..     478     501 .. 0.69
  10 ?    4.4   0.0     0.062        35       7      24 ..     517     534 ..     511     539 .. 0.88
  11 ?    1.1   0.0       0.7     4e+02       8      31 ..     552     573 ..     545     578 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.4
   PF13176.1  10 srlgdyekAielyeraLaltk 30 
                 +  g+ e+ i+++e   a+++
  MMETSP0890-20130614|7109_1 209 RTFGRPERSIQIFED--AMER 227
                 667999********9..7765 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0025
   PF13176.1   7 rlysrlgdyekAielyer 24 
                 ++++rl+++ekA++l+e+
  MMETSP0890-20130614|7109_1 241 SACERLRRWEKALDLLEE 258
                 689*************98 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0077
   PF13176.1   2 llnLarlysrlgdyekAielye 23 
                 +++  ++++++g++ekA+e++ 
  MMETSP0890-20130614|7109_1 271 YNACISACEKVGQWEKALEILN 292
                 6666689***********9975 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.088
   PF13176.1   2 llnLarlysrlgdyekAiely 22 
                 +++  +++++ g++e+A++l+
  MMETSP0890-20130614|7109_1 302 YNAAISACEKGGQWERALQLL 322
                 55566899**********997 PP

  == domain 5    score: 2.3 bits;  conditional E-value: 0.28
   PF13176.1   7 rlysrlgdyekAiely 22 
                 ++++++g +++A++l+
  MMETSP0890-20130614|7109_1 342 SACEKCGHWRRALQLL 357
                 799*********9986 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.085
   PF13176.1   2 llnLarlysrlgdyekAiely 22 
                 +++  +++++ g++e+A++l+
  MMETSP0890-20130614|7109_1 372 YNACISACEKGGQWERALRLL 392
                 6666689***********997 PP

  == domain 7    score: 3.5 bits;  conditional E-value: 0.12
   PF13176.1   7 rlysrlgdyekAiely 22 
                 +++++ g++ekA++l+
  MMETSP0890-20130614|7109_1 412 SACEKGGQWEKALDLF 427
                 589999*******997 PP

  == domain 8    score: 3.1 bits;  conditional E-value: 0.16
   PF13176.1   8 lysrlgdyekAielye 23 
                 ++++ g++e+A++l+ 
  MMETSP0890-20130614|7109_1 449 ACEKGGQWERALDLLD 464
                 8999********9986 PP

  == domain 9    score: -0.7 bits;  conditional E-value: 2.7
   PF13176.1  15 yekAielyeraLalt 29 
                 y+ Ai+++e+  +l+
  MMETSP0890-20130614|7109_1 478 YSAAISACEK--GLR 490
                 6788888888..665 PP

  == domain 10    score: 4.4 bits;  conditional E-value: 0.062
   PF13176.1   7 rlysrlgdyekAielyer 24 
                 ++++++g++ kA++l+++
  MMETSP0890-20130614|7109_1 517 SACEKCGEFGKALKLFQE 534
                 689*************98 PP

  == domain 11    score: 1.1 bits;  conditional E-value: 0.7
   PF13176.1   8 lysrlgdyekAielyeraLaltkd 31 
                 + +++g +++ i+l+e+  a ++ 
  MMETSP0890-20130614|7109_1 552 ALEKMGHWQECIQLLEE--ATKEK 573
                 67899***********9..76655 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.9e-05     0.011      10     133 ..     236     371 ..     231     374 .. 0.83
   2 ?    4.0   0.0     0.053        30      79     134 ..     343     407 ..     337     412 .. 0.54
   3 ?    6.1   0.0     0.012       6.8      11      90 ..     373     460 ..     368     471 .. 0.49
   4 ?    2.8   0.0      0.12        70       7      78 ..     475     545 ..     470     547 .. 0.85
   5 !    8.5   0.0    0.0022       1.3      10      43 ..     546     578 ..     541     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-05
                 STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTS...S---S-TTHHHHHHHT-SSHHHHHHHH--.........--THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHH CS
  PF00637.15  10 lsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflk...knnnydlekvaklcekadlyeeavilykk.........inefkkaisllkklkdfddaieyakkasdpelweklle 133
                 ++++++++e+  ++e  + +Le++  ++   +   ++a + +  k ++ ek+ e+l+     + +  + +++ cek + +e+a+ l++          i+ ++ +is ++k + +++a++ +++++  +l + +++
  MMETSP0890-20130614|7109_1 236 INACISACERLRRWEKALDLLEECKVRGLTPTIVTYNACISACEKVGQWEKALEILNkvkDPDVITYNAAISACEKGGQWERALQLLDEiknrglepsIRSYNASISACEKCGHWRRALQLLSELKRRKLEPTVIT 371
                 67899999****************9999777799999999999999**********96656666999******************988855566666677788888888888888888888888887777666665 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.053
                 HHHT-SSHHHHHHHH--.........--THHHHSS-SSTT--TTGGGTTTTT---TTHHHHHHHH CS
  PF00637.15  79 lcekadlyeeavilykk.........inefkkaisllkklkdfddaieyakkasdpelwekllea 134
                  cek +++++a+ l++          +  ++  is ++k +++++a++ + ++++ e+ ++++++
  MMETSP0890-20130614|7109_1 343 ACEKCGHWRRALQLLSElkrrkleptVITYNACISACEKGGQWERALRLLNELRNDEIEPDIITF 407
                 56666666666666665222222222223334444566666666666666666666666666555 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.012
                 TTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHT.T--HHHHHTTS........S---S-TTHHHHHHHT-SSHHHHH CS
  PF00637.15  11 sevvklfekaglleelieyLekvlketsrenpavqtallelyaky.edpekleeflk........knnnydlekvaklcekadlyeeav 90 
                 +++++++ek g++e  + +L ++++   +   ++ ++ ++ +++  ++ ek+ + ++        + + +  ++v++ cek + +e+a+
  MMETSP0890-20130614|7109_1 373 NACISACEKGGQWERALRLLNELRNDEIEP-DIITFSAAISACEKgGQWEKALDLFSelrdkrklEPDIILFNSVISACEKGGQWERAL 460
                 566666666666666666666666433333.3334444444444333333333333322222213333355556666666666666665 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.12
                 T--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHH CS
  PF00637.15   7 pidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnnydlekvak 78 
                  i +s+ ++++ek  +++  +e+L +v  +++++ ++ ++a + +  k +++ k+ + +++  n ++ +++ 
  MMETSP0890-20130614|7109_1 475 VITYSAAISACEKGLRWTKALELLDEVKRKGRPD-VITYNAAMSACEKCGEFGKALKLFQEVRNQNRSTIIT 545
                 57789999*******************9877666.9999999999999999999999999888888777775 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0022
                 STTTHHHHHTTT-GGGGTGGGTS--...-S--HH CS
  PF00637.15  10 lsevvklfekaglleelieyLekvlketsrenpa 43 
                 ++  ++++ek g+++e i++Le++ ke++ + p+
  MMETSP0890-20130614|7109_1 546 YNVAISALEKMGHWQECIQLLEEATKEKKLK-PN 578
                 67789********************887654.44 PP

>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.4e-10   7.9e-08       1      73 [.     621     701 ..     621     708 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.4e-10
                 EE-----HHHHHHHHHHHHHHHHHHHH.......-EEEEE----....---..HHHHHHHHHHTTHCECCEEEEEE------ CS
  PF01713.16   1 lDLHgltveeAlealeefldrarskgl.......rtvliitGkGshseggv..LkkavkewLdesrkaeevsafreaeprhG 73 
                 +DLH l ++ A+ a+++++d+ r++ +       + ++ itG+Gshsegg   Lk+ ++ +L++   ++++++fre e++ G
  MMETSP0890-20130614|7109_1 621 IDLHELPASVAKIAVRTAIDKFRERRAatdtsmrEILTLITGRGSHSEGGEsvLKPVMTAMLNS-TDFSDILEFREDEKNPG 701
                 8********************************55566************667*********55.55556689998777766 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.029        16      14      64 ..     209     259 ..     206     261 .. 0.77
   2 ?    5.5   0.0      0.02        11      25      62 ..     283     323 ..     277     327 .. 0.77
   3 ?    2.3   0.0      0.21   1.2e+02      25      62 ..     349     393 ..     334     399 .. 0.66
   4 ?    4.2   0.0     0.051        29      15      61 ..     416     463 ..     407     468 .. 0.70
   5 ?    3.4   0.0     0.095        54      15      62 ..     452     499 ..     448     503 .. 0.69
   6 !    8.8   0.0     0.002       1.1       7      66 ..     513     571 ..     508     577 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.029
   PF13414.1  14 fkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekA 64 
                  + g+++ +i+ +e A+e   +n +++ n + +  ++ +++e+Al+ +e++
  MMETSP0890-20130614|7109_1 209 RTFGRPERSIQIFEDAMERGIDNNIYMINACISACERLRRWEKALDLLEEC 259
                 667999************776677777776666666666789**9988875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.02
   PF13414.1  25 ayekAleldpn..nae.lyynlAlaylklgkdyeeAledye 62 
                 ++ekAle+  +  +++ + yn A +  ++g ++e+Al+ ++
  MMETSP0890-20130614|7109_1 283 QWEKALEILNKvkDPDvITYNAAISACEKGGQWERALQLLD 323
                 689999985442255568899999999998889***98765 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.21
   PF13414.1  25 ayekAleldpnnae.......lyynlAlaylklgkdyeeAledye 62 
                 ++++Al+l ++          + yn + +  ++g ++e+Al+ ++
  MMETSP0890-20130614|7109_1 349 HWRRALQLLSELKRrkleptvITYNACISACEKGGQWERALRLLN 393
                 455555554433223333334888888887777778899998776 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.051
   PF13414.1  15 kegdydeAieayekAleldpnnae.lyyn..lAlaylklgkdyeeAledy 61 
                 k g++++A++++++  + ++  ++ +++n  ++++    g ++e+Al+ +
  MMETSP0890-20130614|7109_1 416 KGGQWEKALDLFSELRDKRKLEPDiILFNsvISACEKG-G-QWERALDLL 463
                 6799********99997665555555555335555555.6.578888765 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.095
   PF13414.1  15 kegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledye 62 
                 k g+++ A++++++  ++  +  ++ y  A +  ++g ++ +Ale ++
  MMETSP0890-20130614|7109_1 452 KGGQWERALDLLDELKQYGLKPDVITYSAAISACEKGLRWTKALELLD 499
                 679999999999999997554445555555555555545689998776 PP

  == domain 6    score: 8.8 bits;  conditional E-value: 0.002
   PF13414.1   7 kelGnalfkegdydeAieayekAleldpnnaelyynlAla.ylklgkdyeeAledyekAle 66 
                 +++  a+ k g++ +A++++++    + +  ++ yn A + ++k+g +++e ++ +e+A +
  MMETSP0890-20130614|7109_1 513 NAAMSACEKCGEFGKALKLFQEVRNQNRS-TIITYNVAISaLEKMG-HWQECIQLLEEATK 571
                 45555566789***********9999985.5555666655388999.89*******99976 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.71     4e+02      11      56 ..     212     258 ..     207     266 .. 0.76
   2 ?    3.2   0.0      0.23   1.3e+02      30      57 ..     298     325 ..     279     333 .. 0.68
   3 ?    3.8   0.1      0.15        84      10      57 ..     312     360 ..     302     368 .. 0.73
   4 ?    3.1   0.1      0.26   1.5e+02      12      57 ..     349     395 ..     345     403 .. 0.65
   5 !    8.0   0.1    0.0076       4.3      10      58 ..     382     431 ..     372     439 .. 0.89
   6 !    8.5   0.0     0.005       2.9      10      58 ..     417     467 ..     407     476 .. 0.85
   7 ?    2.3   0.0      0.44   2.5e+02      10      56 ..     453     500 ..     449     509 .. 0.68
   8 ?    5.5   0.0     0.046        26      11      58 ..     523     570 ..     512     579 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.71
   PF13432.1  11 GdydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallra 56 
                 G++++ ++++e+a+++    +     +   a+ rl r+++A+ ll++
  MMETSP0890-20130614|7109_1 212 GRPERSIQIFEDAMERGiDNNIYMINACISACERLRRWEKALDLLEE 258
                 88889999999999888655666666666777788888888877776 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.23
   PF13432.1  30 aaeallllaeallrlgrldeAaallraa 57 
                 ++  + +   a+ + g++++A++ll+++
  MMETSP0890-20130614|7109_1 298 DVITYNAAISACEKGGQWERALQLLDEI 325
                 5667777778899999999999999987 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.15
   PF13432.1  10 aGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraa 57 
                  G++++Al++l+++  +   P   + + +   a+ + g++ +A++ll ++
  MMETSP0890-20130614|7109_1 312 GGQWERALQLLDEIKNRGleP-SIRSYNASISACEKCGHWRRALQLLSEL 360
                 366888888888888888766.7777777777777778888888888776 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.26
   PF13432.1  12 dydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraa 57 
                 ++++Al++l+++ ++   P  +  + +   a+ + g++++A++ll+++
  MMETSP0890-20130614|7109_1 349 HWRRALQLLSELKRRKleP-TVITYNACISACEKGGQWERALRLLNEL 395
                 5666666666666666555.6666666667777777777777777665 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.0076
   PF13432.1  10 aGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraal 58 
                  G++++Al++l++++ ++  P +   + +   a+ + g++++A+ l+ ++ 
  MMETSP0890-20130614|7109_1 382 GGQWERALRLLNELRNDEieP-DIITFSAAISACEKGGQWEKALDLFSELR 431
                 589***************999.9*********************9999986 PP

  == domain 6    score: 8.5 bits;  conditional E-value: 0.005
   PF13432.1  10 aGdydeAlaaleaalala...PeaaeallllaeallrlgrldeAaallraal 58 
                  G++++Al+++++++++    P +   +     a+ + g++++A+ ll+++ 
  MMETSP0890-20130614|7109_1 417 GGQWEKALDLFSELRDKRkleP-DIILFNSVISACEKGGQWERALDLLDELK 467
                 477***************8777.899999999999999*******9999984 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.44
   PF13432.1  10 aGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallra 56 
                  G++++Al++l+++  +   P ++  + +   a+ +  r+ +A++ll++
  MMETSP0890-20130614|7109_1 453 GGQWERALDLLDELKQYGlkP-DVITYSAAISACEKGLRWTKALELLDE 500
                 478888888888888777777.666666666666666666666666666 PP

  == domain 8    score: 5.5 bits;  conditional E-value: 0.046
   PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                 G++ +Al+++++++ ++      +     al ++g+++e ++ll++a 
  MMETSP0890-20130614|7109_1 523 GEFGKALKLFQEVRNQNRSTIITYNVAISALEKMGHWQECIQLLEEAT 570
                 78999************97777777777777799***99999999986 PP

>> PF04714.8  BCL7, N-terminal conserver region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0031       1.8      19      42 ..     238     261 ..     233     263 .. 0.82
   2 ?    5.2   0.0     0.025        14      21      35 ..     275     289 ..     272     303 .. 0.82
   3 ?   -1.3   0.0       2.6   1.5e+03      21      37 ..     306     322 ..     292     327 .. 0.84
   4 ?   -0.9   0.0         2   1.2e+03      21      38 ..     341     358 ..     337     363 .. 0.83
   5 ?   -2.0   0.0       4.3   2.5e+03      21      36 ..     376     391 ..     374     394 .. 0.81
   6 ?    0.5   0.0      0.69   3.9e+02      21      37 ..     411     427 ..     407     433 .. 0.83
   7 ?    0.7   0.0      0.61   3.5e+02      19      35 ..     445     461 ..     441     467 .. 0.85
   8 ?   -2.1   0.0       4.8   2.7e+03      21      36 ..     482     497 ..     480     502 .. 0.81
   9 ?    0.7   0.0      0.61   3.5e+02      21      33 ..     550     562 ..     534     571 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0031
   PF04714.8  19 kviqalekvRrWEkklvlikDtti 42 
                   i a e+ RrWEk l l+++ ++
  MMETSP0890-20130614|7109_1 238 ACISACERLRRWEKALDLLEECKV 261
                 56899*********9988877665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.025
   PF04714.8  21 iqalekvRrWEkklv 35 
                 i a ekv +WEk l 
  MMETSP0890-20130614|7109_1 275 ISACEKVGQWEKALE 289
                 7899********875 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.6
   PF04714.8  21 iqalekvRrWEkklvli 37 
                 i a ek  +WE+ l l+
  MMETSP0890-20130614|7109_1 306 ISACEKGGQWERALQLL 322
                 7899999****988665 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 2
   PF04714.8  21 iqalekvRrWEkklvlik 38 
                 i a ek  +W + l l++
  MMETSP0890-20130614|7109_1 341 ISACEKCGHWRRALQLLS 358
                 7899******99887776 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 4.3
   PF04714.8  21 iqalekvRrWEkklvl 36 
                 i a ek  +WE+ l l
  MMETSP0890-20130614|7109_1 376 ISACEKGGQWERALRL 391
                 78999******98755 PP

  == domain 6    score: 0.5 bits;  conditional E-value: 0.69
   PF04714.8  21 iqalekvRrWEkklvli 37 
                 i a ek  +WEk l l 
  MMETSP0890-20130614|7109_1 411 ISACEKGGQWEKALDLF 427
                 7899********98665 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.61
   PF04714.8  19 kviqalekvRrWEkklv 35 
                  vi a ek  +WE+ l 
  MMETSP0890-20130614|7109_1 445 SVISACEKGGQWERALD 461
                 69***********9875 PP

  == domain 8    score: -2.1 bits;  conditional E-value: 4.8
   PF04714.8  21 iqalekvRrWEkklvl 36 
                 i a ek  rW k l l
  MMETSP0890-20130614|7109_1 482 ISACEKGLRWTKALEL 497
                 78999999**998765 PP

  == domain 9    score: 0.7 bits;  conditional E-value: 0.61
   PF04714.8  21 iqalekvRrWEkk 33 
                 i alek+ +W   
  MMETSP0890-20130614|7109_1 550 ISALEKMGHWQEC 562
                 89********865 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.047        27      10      27 ..     242     259 ..     241     260 .. 0.90
   2 ?    2.6   0.0      0.25   1.4e+02      10      26 ..     277     293 ..     276     295 .. 0.85
   3 ?    0.8   0.0      0.91   5.2e+02      10      26 ..     308     324 ..     307     325 .. 0.81
   4 ?   -1.1   0.0       3.7   2.1e+03      13      24 ..     346     357 ..     343     361 .. 0.61
   5 ?    1.6   0.0      0.52     3e+02      10      26 ..     378     394 ..     377     396 .. 0.84
   6 ?    4.0   0.0     0.087        49      10      26 ..     413     429 ..     412     433 .. 0.86
   7 ?    1.6   0.1      0.53     3e+02      10      27 ..     449     466 ..     448     469 .. 0.84
   8 ?   -2.0   0.0       7.3   4.1e+03      16      20 ..     490     494 ..     478     501 .. 0.51
   9 ?    5.3   0.0     0.035        20      10      28 ..     518     536 ..     517     541 .. 0.85
  10 !    7.6   0.0    0.0063       3.6      10      29 ..     552     571 ..     551     574 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.047
                 HHHHTT-HHHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafekA 27 
                 a+++l+++e+Al+++e++
  MMETSP0890-20130614|7109_1 242 ACERLRRWEKALDLLEEC 259
                 6899***********986 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.25
                 HHHHTT-HHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafek 26 
                 a++k g++e+Ale ++k
  MMETSP0890-20130614|7109_1 277 ACEKVGQWEKALEILNK 293
                 67889*******98887 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.91
                 HHHHTT-HHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafek 26 
                 a++k g++e+Al+++++
  MMETSP0890-20130614|7109_1 308 ACEKGGQWERALQLLDE 324
                 57788999999998875 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 3.7
                 HTT-HHHHHHHH CS
  PF07719.12  13 klgdyeeAleaf 24 
                 k g++ +Al+++
  MMETSP0890-20130614|7109_1 346 KCGHWRRALQLL 357
                 566666666655 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.52
                 HHHHTT-HHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafek 26 
                 a++k g++e+Al+++++
  MMETSP0890-20130614|7109_1 378 ACEKGGQWERALRLLNE 394
                 577889******99987 PP

  == domain 6    score: 4.0 bits;  conditional E-value: 0.087
                 HHHHTT-HHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafek 26 
                 a++k g++e+Al++f +
  MMETSP0890-20130614|7109_1 413 ACEKGGQWEKALDLFSE 429
                 67888*********987 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.53
                 HHHHTT-HHHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafekA 27 
                 a++k g++e+Al+++++ 
  MMETSP0890-20130614|7109_1 449 ACEKGGQWERALDLLDEL 466
                 67888********99885 PP

  == domain 8    score: -2.0 bits;  conditional E-value: 7.3
                 -HHHH CS
  PF07719.12  16 dyeeA 20 
                 ++ +A
  MMETSP0890-20130614|7109_1 490 RWTKA 494
                 33444 PP

  == domain 9    score: 5.3 bits;  conditional E-value: 0.035
                 HHHHTT-HHHHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafekAl 28 
                 a++k g++ +Al++f+++ 
  MMETSP0890-20130614|7109_1 518 ACEKCGEFGKALKLFQEVR 536
                 67899***********975 PP

  == domain 10    score: 7.6 bits;  conditional E-value: 0.0063
                 HHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleafekAle 29 
                 a++k+g+++e+++++e+A +
  MMETSP0890-20130614|7109_1 552 ALEKMGHWQECIQLLEEATK 571
                 789***************87 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011       6.2      13      28 ..     244     259 ..     241     261 .. 0.87
   2 ?    0.1   0.0       1.3   7.5e+02      14      28 ..     280     294 ..     276     296 .. 0.80
   3 ?    2.8   0.0      0.18     1e+02      14      28 ..     311     325 ..     302     328 .. 0.83
   4 ?   -2.5   0.0       8.8     5e+03      16      28 ..     348     360 ..     344     364 .. 0.80
   5 ?    0.9   0.0      0.72   4.1e+02      14      27 ..     381     394 ..     377     397 .. 0.82
   6 ?    3.1   0.0      0.15        85      14      33 ..     416     435 ..     411     438 .. 0.84
   7 ?    2.9   0.0      0.17        95      14      28 ..     452     466 ..     444     469 .. 0.81
   8 ?    1.4   0.0      0.52   2.9e+02      15      29 ..     522     536 ..     513     537 .. 0.83
   9 ?    0.8   0.0      0.81   4.6e+02       7      28 ..     547     569 ..     545     571 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.011
   PF13374.1  13 rargryeeAlaleeea 28 
                  +++r+e+Al+l+ee+
  MMETSP0890-20130614|7109_1 244 ERLRRWEKALDLLEEC 259
                 578***********97 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.3
   PF13374.1  14 argryeeAlaleeea 28 
                 + g++e+Al+++ ++
  MMETSP0890-20130614|7109_1 280 KVGQWEKALEILNKV 294
                 569******998665 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.18
   PF13374.1  14 argryeeAlaleeea 28 
                 + g++e+Al+l+ e+
  MMETSP0890-20130614|7109_1 311 KGGQWERALQLLDEI 325
                 67**********997 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 8.8
   PF13374.1  16 gryeeAlaleeea 28 
                 g +++Al+l+ e 
  MMETSP0890-20130614|7109_1 348 GHWRRALQLLSEL 360
                 8899999999775 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.72
   PF13374.1  14 argryeeAlaleee 27 
                 + g++e+Al+l+ e
  MMETSP0890-20130614|7109_1 381 KGGQWERALRLLNE 394
                 569********977 PP

  == domain 6    score: 3.1 bits;  conditional E-value: 0.15
   PF13374.1  14 argryeeAlaleeealairr 33 
                 + g++e+Al+l+ e ++ r+
  MMETSP0890-20130614|7109_1 416 KGGQWEKALDLFSELRDKRK 435
                 569*********99887665 PP

  == domain 7    score: 2.9 bits;  conditional E-value: 0.17
   PF13374.1  14 argryeeAlaleeea 28 
                 + g++e+Al+l+ e 
  MMETSP0890-20130614|7109_1 452 KGGQWERALDLLDEL 466
                 67*********9986 PP

  == domain 8    score: 1.4 bits;  conditional E-value: 0.52
   PF13374.1  15 rgryeeAlaleeeal 29 
                  g++++Al+l++e++
  MMETSP0890-20130614|7109_1 522 CGEFGKALKLFQEVR 536
                 599*********985 PP

  == domain 9    score: 0.8 bits;  conditional E-value: 0.81
   PF13374.1   7 nLAl.alrargryeeAlaleeea 28 
                 n+A+ al ++g ++e  +l+eea
  MMETSP0890-20130614|7109_1 547 NVAIsALEKMGHWQECIQLLEEA 569
                 778889999************98 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.013       7.4      25      70 ..     185     230 ..     175     246 .. 0.75
   2 ?    0.2   0.0       1.1   6.5e+02      19      66 ..     251     296 ..     248     311 .. 0.66
   3 ?    1.4   0.0      0.49   2.8e+02       9      65 ..     307     361 ..     298     374 .. 0.73
   4 ?   -0.8   0.0       2.3   1.3e+03      51      78 ..     382     405 ..     344     426 .. 0.72
   5 ?    4.6   0.0     0.049        28      10      68 ..     518     573 ..     508     599 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.013
   PF12688.2  25 rrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaeapg 70 
                 ++Al++  + + ++++++     LR  Gr+e+s++++e+++++  +
  MMETSP0890-20130614|7109_1 185 EQALEQLNEPIWNPKLIVLIMGRLRTFGRPERSIQIFEDAMERGID 230
                 66776655556677888888899***************99997333 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.1
   PF12688.2  19 kAvplYrrAlaaGLagarrr.ratiqlaSsLRnlGrveeslalleaela 66 
                 kA++l ++    GL+ ++    a     S+   +G+ e++l +l++  +
  MMETSP0890-20130614|7109_1 251 KALDLLEECKVRGLTPTIVTyNAC---ISACEKVGQWEKALEILNKVKD 296
                 677777777777777665441333...3777899********9998766 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.49
   PF12688.2   9 garDstGeeakAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleael 65 
                 +a +  G+ ++A++l  +  + GL+ ++r        S+    G+  ++l+ll +  
  MMETSP0890-20130614|7109_1 307 SACEKGGQWERALQLLDEIKNRGLEPSIRSY--NASISACEKCGHWRRALQLLSELK 361
                 4667889999999999999999999876543..233467777888888888887665 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 2.3
   PF12688.2  51 lGrveeslalleaelaeapgdelddala 78 
                  G+ e++l+ll++  ++    e++  + 
  MMETSP0890-20130614|7109_1 382 GGQWERALRLLNELRND----EIEPDII 405
                 48899999999887664....4444444 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.049
   PF12688.2  10 arDstGeeakAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaea 68 
                 a +  Ge  kA++l+++  ++  + ++   + i   S+L  +G+ +e ++lle++++e+
  MMETSP0890-20130614|7109_1 518 ACEKCGEFGKALKLFQEVRNQNRSTIITYNVAI---SALEKMGHWQECIQLLEEATKEK 573
                 556667777777777777666666666555555...99***************999873 PP

>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.58   3.3e+02     188     226 ..     219     258 ..     215     263 .. 0.73
   2 ?   -1.2   0.0       1.4   8.1e+02     199     227 ..     264     294 ..     249     327 .. 0.72
   3 ?   -0.0   0.0      0.63   3.6e+02     180     233 ..     347     400 ..     316     410 .. 0.74
   4 ?    5.1   0.0     0.017       9.7     171     226 ..     408     465 ..     385     482 .. 0.76
   5 !    7.0   0.1    0.0046       2.6     182     257 ..     524     599 ..     512     613 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.58
                 HHHHHHHHHS---HHHH---HHH..HHH---HHHH---HHH CS
   PF04733.9 188 yifqelsekykstplllngkAvv..slllgryeeAeslLke 226
                  if++  e+      + + +A++  +  l r+e+A  lL+e
  MMETSP0890-20130614|7109_1 219 QIFEDAMER-GIDNNIYMINACIsaCERLRRWEKALDLLEE 258
                 589998888.55555566666651155689*********98 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.4
                 --HHHH---HHHHHH..---HHHH---HHHH CS
   PF04733.9 199 stplllngkAvvsll..lgryeeAeslLkea 227
                  tp + + +A++s +  +g++e+A ++L++ 
  MMETSP0890-20130614|7109_1 264 LTPTIVTYNACISACekVGQWEKALEILNKV 294
                 5777788888876552268999999988764 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.63
                 --HHHHHHHHHHHHHHHS---HHHH---HHHHHH-..--HHHH---HHHHHHH--- CS
   PF04733.9 180 gekiqdAyyifqelsekykstplllngkAvvslll..gryeeAeslLkeaLdkdak 233
                  ++ + A+ + +el  + k  p + + +A++s +   g++e A  lL+e L  d+ 
  MMETSP0890-20130614|7109_1 347 CGHWRRALQLLSELKRR-KLEPTVITYNACISACEkgGQWERALRLLNE-LRNDEI 400
                 45567788888888877.7777777777777666422799999999987.555555 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.017
                 HHHHHHH----HHHHHHHHHHHHHHHS---HHHH---HHHHHH-..--HHHH---HHH CS
   PF04733.9 171 qawvklavggekiqdAyyifqelsekykstplllngkAvvslll..gryeeAeslLke 226
                 +a ++    g++ + A+ +f+el +k k  p++   + v+s +   g++e A  lL e
  MMETSP0890-20130614|7109_1 408 SAAISACEKGGQWEKALDLFSELRDKRKLEPDIILFNSVISACEkgGQWERALDLLDE 465
                 4667778888999999999999999988888887777776665422799999999976 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHHHHS---HHHH---HHHHHH---HHHH---HHHHHHH----HHHHHHHHHHHHH----HHHHHH CS
   PF04733.9 182 kiqdAyyifqelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevser 257
                 ++  A+ +fqe+ ++  st ++ n    +  ++g+++e  +lL+ea + ++ +++++   +  +    +++ + +r
  MMETSP0890-20130614|7109_1 524 EFGKALKLFQEVRNQNRSTIITYNVAISALEKMGHWQECIQLLEEATKEKKLKPNVITYCLMISGYEVREDTARAR 599
                 4567999********77777777766666668***************99999999887655544444444455555 PP

>> PF12000.3  Gkycosyl transferase family 4 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.37   2.1e+02      34      71 ..     165     202 ..     146     207 .. 0.80
   2 ?   -1.2   0.0       2.1   1.2e+03      46      71 ..     346     371 ..     317     376 .. 0.70
   3 ?    4.0   0.0     0.052        30      51      72 ..     386     407 ..     360     415 .. 0.76
   4 ?    0.5   0.0      0.65   3.7e+02      51      73 ..     421     444 ..     412     449 .. 0.87
   5 ?    2.4   0.0      0.16        93      51      71 ..     457     477 ..     446     484 .. 0.87
   6 ?   -2.5   0.0       5.2     3e+03      49      71 ..     490     511 ..     468     516 .. 0.68
   7 ?   -3.4   0.0       9.8   5.6e+03      43      70 ..     552     580 ..     533     581 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.37
   PF12000.3  34 kevhpylreleekvlrgeavlraaeqLkkegfkPdviv 71 
                 +++ p l +  +++++++++ +a+eqL++  ++P +iv
  MMETSP0890-20130614|7109_1 165 TGIAPKLFKQLNSATNATELEQALEQLNEPIWNPKLIV 202
                 555555555556789999******************98 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.1
   PF12000.3  46 kvlrgeavlraaeqLkkegfkPdviv 71 
                 k+ + +++l+++++Lk++  +P vi 
  MMETSP0890-20130614|7109_1 346 KCGHWRRALQLLSELKRRKLEPTVIT 371
                 34444678999999999999999986 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.052
   PF12000.3  51 eavlraaeqLkkegfkPdviva 72 
                 e++lr++++L++++++Pd+i  
  MMETSP0890-20130614|7109_1 386 ERALRLLNELRNDEIEPDIITF 407
                 6899***************975 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.65
   PF12000.3  51 eavlraaeqLkke.gfkPdvivaH 73 
                 e++l ++++L+++   +Pd+i+  
  MMETSP0890-20130614|7109_1 421 EKALDLFSELRDKrKLEPDIILFN 444
                 6789999******9*******975 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.16
   PF12000.3  51 eavlraaeqLkkegfkPdviv 71 
                 e++l ++++Lk+ g kPdvi 
  MMETSP0890-20130614|7109_1 457 ERALDLLDELKQYGLKPDVIT 477
                 6789999************96 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 5.2
   PF12000.3  49 rgeavlraaeqLkkegfkPdviv 71 
                 r +++l+++++ k++g  Pdvi 
  MMETSP0890-20130614|7109_1 490 RWTKALELLDEVKRKGR-PDVIT 511
                 44556677777777776.99986 PP

  == domain 7    score: -3.4 bits;  conditional E-value: 9.8
   PF12000.3  43 leekvlrgeavlraaeqLkke.gfkPdvi 70 
                 + ek+ + +++++++e+  ke   kP+vi
  MMETSP0890-20130614|7109_1 552 ALEKMGHWQECIQLLEEATKEkKLKPNVI 580
                 44567777888888888877778899888 PP

>> PF13579.1  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.011       6.2       2      31 ..     348     377 ..     347     425 .. 0.87
   2 ?    3.2   0.0      0.14        80       1      31 [.     453     483 ..     453     519 .. 0.84
   3 ?   -0.0   0.0       1.3   7.6e+02      66      92 ..     610     635 ..     585     678 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.011
   PF13579.1   2 GieryvrelaeaLaarGheVtvltpaaapg 31 
                 G++r++++l+ +L +r  e tv+t+ a+ +
  MMETSP0890-20130614|7109_1 348 GHWRRALQLLSELKRRKLEPTVITYNACIS 377
                 899*********************888765 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.14
   PF13579.1   1 gGieryvrelaeaLaarGheVtvltpaaapg 31 
                 gG + ++++l+ +L + G   +v+t++aa +
  MMETSP0890-20130614|7109_1 453 GGQWERALDLLDELKQYGLKPDVITYSAAIS 483
                 899**********************887755 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 1.3
   PF13579.1  66 llrqrrerpdvvhahsptaglaarlar 92 
                 ++++ +++pd++ +h+ +a+ +a +a 
  MMETSP0890-20130614|7109_1 610 FFSHIWYAPDMIDLHELPAS-VAKIAV 635
                 3355699*********8654.454443 PP

>> PF08967.5  Domain of unknown function (DUF1884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.025        14      18      33 ..     392     407 ..     386     414 .. 0.86
   2 ?   -0.2   0.0       1.7   9.8e+02      20      34 ..     429     444 ..     422     449 .. 0.76
   3 ?    3.5   0.0      0.11        65      18      32 ..     463     477 ..     457     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.025
   PF08967.5  18 ineLkeeGfePdiiLv 33 
                 +neL+++ +ePdii +
  MMETSP0890-20130614|7109_1 392 LNELRNDEIEPDIITF 407
                 79***********987 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.7
   PF08967.5  20 eLkee.GfePdiiLvG 34 
                 eL++   +ePdiiL+ 
  MMETSP0890-20130614|7109_1 429 ELRDKrKLEPDIILFN 444
                 66654268******85 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.11
   PF08967.5  18 ineLkeeGfePdiiL 32 
                 ++eLk+ G++Pd+i 
  MMETSP0890-20130614|7109_1 463 LDELKQYGLKPDVIT 477
                 68***********96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.47   2.7e+02      10      27 ..     242     259 ..     241     260 .. 0.85
   2 ?    2.9   0.0      0.14        79      10      26 ..     277     293 ..     269     295 .. 0.83
   3 ?   -1.1   0.0       2.5   1.4e+03      10      21 ..     308     319 ..     302     324 .. 0.54
   4 ?   -2.5   0.0       7.2   4.1e+03      10      23 ..     378     391 ..     372     394 .. 0.70
   5 ?    2.0   0.0      0.27   1.6e+02      10      25 ..     413     428 ..     412     429 .. 0.84
   6 ?   -1.9   0.0       4.7   2.7e+03      10      24 ..     449     463 ..     448     465 .. 0.77
   7 ?   -0.9   0.0       2.3   1.3e+03      17      28 ..     478     489 ..     478     490 .. 0.88
   8 ?    4.2   0.0     0.053        30      10      27 ..     518     535 ..     517     540 .. 0.90
   9 ?    2.6   0.0      0.18     1e+02      10      28 ..     552     570 ..     550     573 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.47
                 HHHHTT-HHHHHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyyekA 27 
                 a+ +l ++++Al+  e++
  MMETSP0890-20130614|7109_1 242 ACERLRRWEKALDLLEEC 259
                 678999******998875 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.14
                 HHHHTT-HHHHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyyek 26 
                 a+ k g++++Ale  +k
  MMETSP0890-20130614|7109_1 277 ACEKVGQWEKALEILNK 293
                 78999*******97776 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2.5
                 HHHHTT-HHHHH CS
  PF00515.23  10 aylklgkydeAl 21 
                 a+ k g+++ Al
  MMETSP0890-20130614|7109_1 308 ACEKGGQWERAL 319
                 344445555555 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 7.2
                 HHHHTT-HHHHHHH CS
  PF00515.23  10 aylklgkydeAley 23 
                 a+ k g+++ Al  
  MMETSP0890-20130614|7109_1 378 ACEKGGQWERALRL 391
                 56667788888765 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.27
                 HHHHTT-HHHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyye 25 
                 a+ k g++++Al+ ++
  MMETSP0890-20130614|7109_1 413 ACEKGGQWEKALDLFS 428
                 67788********997 PP

  == domain 6    score: -1.9 bits;  conditional E-value: 4.7
                 HHHHTT-HHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyy 24 
                 a+ k g+++ Al+  
  MMETSP0890-20130614|7109_1 449 ACEKGGQWERALDLL 463
                 567889999999865 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHH CS
  PF00515.23  17 ydeAleyyekAL 28 
                 y  A+ ++ek L
  MMETSP0890-20130614|7109_1 478 YSAAISACEKGL 489
                 789*******88 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.053
                 HHHHTT-HHHHHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyyekA 27 
                 a+ k g++ +Al+ ++++
  MMETSP0890-20130614|7109_1 518 ACEKCGEFGKALKLFQEV 535
                 7899***********986 PP

  == domain 9    score: 2.6 bits;  conditional E-value: 0.18
                 HHHHTT-HHHHHHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyyekAL 28 
                 a+ k+g ++e+++  e+A 
  MMETSP0890-20130614|7109_1 552 ALEKMGHWQECIQLLEEAT 570
                 789*************995 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.1   1.2e+03      64      87 ..     235     258 ..     174     296 .. 0.68
   2 ?    0.7   0.1      0.92   5.2e+02      62     123 ..     334     396 ..     318     402 .. 0.68
   3 ?   -0.4   0.0         2   1.2e+03      76     127 ..     383     435 ..     361     440 .. 0.61
   4 ?    4.5   0.0     0.063        36      98     125 ..     511     538 ..     481     543 .. 0.83
   5 ?    0.3   0.0       1.3   7.2e+02      69      98 ..     550     579 ..     538     607 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.1
  PF03704.12  64 alealieadlrlgrheellaelea 87 
                 ++ a+i a  rl r+e++l+ le+
  MMETSP0890-20130614|7109_1 235 MINACISACERLRRWEKALDLLEE 258
                 445556666666666666666654 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.92
  PF03704.12  62 lealealieadlrlgrheellaelealvalh..PlrErlhrqlmrAlyrsGrqaeALevYrrlr 123
                 ++ + a i a  ++g+++++l+ l++l +++  P+   ++ +++ A  + G+ + AL+  ++lr
  MMETSP0890-20130614|7109_1 334 IRSYNASISACEKCGHWRRALQLLSELKRRKlePTV-ITYNACISACEKGGQWERALRLLNELR 396
                 566777888888899999888888888654310322.445666666666666666666666555 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 2
  PF03704.12  76 grheellaelealvalhPlrEr.lhrqlmrAlyrsGrqaeALevYrrlrrrLa 127
                 g++e++l+ l +l + +   +  +  + + A  + G+ ++AL+ + +lr+  +
  MMETSP0890-20130614|7109_1 383 GQWERALRLLNELRNDEIEPDIiTFSAAISACEKGGQWEKALDLFSELRDKRK 435
                 55555555555554444333331334566666777788888888888887655 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.063
  PF03704.12  98 lhrqlmrAlyrsGrqaeALevYrrlrrr 125
                 ++ + m A  ++G+  +AL+ ++++r +
  MMETSP0890-20130614|7109_1 511 TYNAAMSACEKCGEFGKALKLFQEVRNQ 538
                 68899********************986 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 1.3
  PF03704.12  69 ieadlrlgrheellaelealvalhPlrErl 98 
                 i a  ++g+++e+++ le++++++ l+ ++
  MMETSP0890-20130614|7109_1 550 ISALEKMGHWQECIQLLEEATKEKKLKPNV 579
                 566678999999999999999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:01.03
# Mc/sec: 1654.18
//
Query:       MMETSP0890-20130614|7114_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00076   19.2   0.4       0.54   10.1   0.0    2.6  2  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.03   14.0   1.6       0.15   11.8   0.0    2.8  3  PF13374.1  Tetratricopeptide repeat
      0.048   12.3   0.2       0.15   10.7   0.1    1.7  2  PF00750.14 tRNA synthetases class I (R)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0013         6      10      57 ..      87     134 ..      85     136 .. 0.80
   2 !   10.1   0.0   0.00012      0.54      11      49 ..     179     217 ..     170     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0013
   PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlyl 57 
                 n++++l++ ++++ A ++ ++  e + +  +  p++ar+l  l  +y+
  MMETSP0890-20130614|7114_1  87 NIGELLLKIKKHQAAVDFNRRNYEKYLLNINKYPELARSLSSLIHIYA 134
                 789999999999999999999888864667788899999888877776 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00012
   PF13424.1  11 lalvlrrlgdydeAlelyekalel.lrelgddhpdtaral 49 
                 l ++l ++++y eA++++  +l+  +r lg+ h    + l
  MMETSP0890-20130614|7114_1 179 LCGILIAQRKYAEAEQILSPCLQKaQRILGPSHRL-TKFL 217
                 6678999*****************9999****965.4555 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.31   1.4e+03       7      24 ..      87     104 ..      87     107 .. 0.85
   2 ?   -1.7   0.1      0.62   2.8e+03      18      26 ..     153     161 ..     152     162 .. 0.83
   3 ?   11.8   0.0   3.4e-05      0.15      12      40 ..     183     211 ..     181     213 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.31
   PF13374.1   7 nLAlalrargryeeAlal 24 
                 n++ +l + +++++A+++
  MMETSP0890-20130614|7114_1  87 NIGELLLKIKKHQAAVDF 104
                 889999999999999987 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.62
   PF13374.1  18 yeeAlalee 26 
                 +eeA++l++
  MMETSP0890-20130614|7114_1 153 LEEAERLMR 161
                 699**9997 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 3.4e-05
   PF13374.1  12 lrargryeeAlaleeealairrrllGddH 40 
                 l a+++y+eA++++  +l   +r+lG+ H
  MMETSP0890-20130614|7114_1 183 LIAQRKYAEAEQILSPCLQKAQRILGPSH 211
                 5689***********************99 PP

>> PF00750.14  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.4e-05      0.15     119     190 ..      29     101 ..      11     109 .. 0.82
   2 ?   -1.0   0.0      0.11   5.2e+02     246     279 ..     127     160 ..     109     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.4e-05
  PF00750.14 119 dalkerarsyvvllqsedee.frkawkkklvdlikselnkiytaldvtliegesvkkerlndivkelkdkglv 190
                 +al   ++  +  l+++ +  + +++++ ++  ik+  ++++ ++d + ie+e+  ++++ +++ ++k++  +
  MMETSP0890-20130614|7114_1  29 NALLCLDFALFETLDNGAHRdLITFCRLRILFSIKNVRKQLHNKIDGFRIEQEINDDKNIGELLLKIKKHQAA 101
                 445555778889999988777*******************************************999998765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.11
  PF00750.14 246 dadqegyiarlfaaakklgydpesvevlhigfgv 279
                 ++  + y + lf+a+  +g+dp    ++ ++ ++
  MMETSP0890-20130614|7114_1 127 SSLIHIYAKSLFLAFMNAGNDPPHHYLEEAERLM 160
                 555689999***********99888777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.99
# Mc/sec: 563.99
//
Query:       MMETSP0890-20130614|7113_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-11   42.1   0.0    6.6e-11   41.8   0.0    1.1  1  PF02889.11 Sec63 Brl domain
  ------ inclusion threshold ------
       0.42    8.4  13.4       0.57    8.0   9.3    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF02889.11  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   9.7e-15   6.6e-11     178     310 ..       1     141 [.       1     146 [. 0.85

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 9.7e-15
  PF02889.11 178 lseeeleellkqnpkqgkdiakvlnkl.Pkleveakvqpitee.ve..eslrvsvtlkrdfkwde..........kypgkksenfwlvvedsendellaiervslkkkkeaseeheleftvpialepkpknltirlvsdkwlgldke 310
                 +++++ + l    + q+kd+  v+n + P++e ++++ +++e+ +   + + +sv+++r + +            ++p +k e++w+++  +++  l+  e++s +++   + eh+++f++p + ++  + + + l s  ++gld +
  MMETSP0890-20130614|7113_1   1 MPDDQKKGLGDLSDDQVKDVLTVCNTIiPQIEATFTLFVEDETeIAegDLVSLSVKMTRTNLQAPgqqappvhapYFPAQKLESWWILISSKDG-PLILAEKISNRNR---KLEHRVKFVAPPRAGK--YAFVVDLKSADYIGLDIR 141
                 566677777765669**********777*****9999999888543799999999999999555599********************9998777.8888899999444...799**********998..899***********9966 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.3   8.4e-05      0.57     121     194 ..     173     236 ..     153     243 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 8.4e-05
   PF02724.9 121 yealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrr 194
                 +e+       ++ + d++sd++dd+++++++++  + s  d+d++ d  +e+ +e++r+r++     k+l++rr
  MMETSP0890-20130614|7113_1 173 FEQV------MSANVDDSSDDDDDDDDDDTNKKGGNISVGDDDDDFDAPNESLSEAERRRRQA----KRLKQRR 236
                 3333......22344455555555555555554445555555555555556666666666666....2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       650  (0.0475424); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.43s 00:00:01.02 Elapsed: 00:00:00.68
# Mc/sec: 859.87
//
Query:       MMETSP0890-20130614|7120_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.5   3.4      0.097   12.4   1.4    2.2  2  PF12807.2 Translation initiation factor eIF3 subunit 135


Domain annotation for each model (and alignments):
>> PF12807.2  Translation initiation factor eIF3 subunit 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.4   7.1e-06     0.097      37     127 ..     162     275 ..     126     318 .. 0.69
   2 ?   -1.3   0.0      0.11   1.6e+03      75      89 ..     369     400 ..     353     487 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-06
   PF12807.2  37 slehlqnlllsemvaRaaKhilrdylrqleaedlaeavshflNcllgeeeee......................kaekekreke.........aassseddsewtkltpkklweeikkeiks 127
                  l++ +nl+ + + aR aKh+   + +   +  la  ++hfl   l ++ ++                      +        +         + ++++++ + ++ t+k+ + ei+++ k+
  MMETSP0890-20130614|7120_1 162 YLHFESNLMERTLFARLAKHLTVLVASTRRQRRLADNIIHFLETRLYDQYKQskeyisgttrggrlareaviqkQ--------QenlrhavtyQLFYDQEEEKCAAQTTKTEQIEICNQNKN 275
                 6777899**************9999999999***********998877777757777777777777665544330........122233333322444444444444444444444444333 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.11
   PF12807.2  75 shflNcllgeeeee.................k 89 
                 ++ lN+++g + +                  +
  MMETSP0890-20130614|7120_1 369 IDALNFFYGGDDNDqdetvmtqfphlesrhaS 400
                 45588888877777455555554433333220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:00.64
# Mc/sec: 2358.91
//
Query:       MMETSP0890-20130614|7122_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-21   75.6   0.3      3e-21   75.1   0.2    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
     0.0011   19.1   0.0     0.0017   18.4   0.0    1.2  1  PF03847.8  Transcription initiation factor TFIID subunit A
     0.0012   18.7   1.0     0.0015   18.4   0.0    1.7  2  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
  ------ inclusion threshold ------
      0.063   12.5   0.0      0.072   12.3   0.0    1.1  1  PF05560.6  Bacillus thuringiensis P21 molecular chaperone protein


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.2   8.8e-25     3e-21       2      74 ..      24      92 ..      23      93 .. 0.96

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 8.8e-25
  PF00125.19  2 sdllilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAvrl 74
                ++ +++  +++Rv+++++++    ++is++ +++++++++d++e+i+ +A++l++++k+ t+++r+iq+Avrl
  MMETSP0890-20130614|7122_1 24 KRVETYATYIYRVLKQVHPD----TGISKKGMSIMNSFINDIFERIALEASKLSRYSKKATLSSREIQTAVRL 92
                677899**************....************************************************8 PP

>> PF03847.8  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     5e-07    0.0017       8      60 ..      36      88 ..      31      92 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5e-07
   PF03847.8  8 LvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60
                 ++qv ++t + +++  ++   ++d  e +   a+kl ++ k  +l++r iq 
  MMETSP0890-20130614|7122_1 36 VLKQVHPDTGISKKGMSIMNSFINDIFERIALEASKLSRYSKKATLSSREIQT 88
                789************************************************95 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.2   1.1e+04      50      56 ..      11      17 ..       6      22 .. 0.53
   2 !   18.4   0.0   4.4e-07    0.0015       8      65 .]      33      90 ..      30      90 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 3.2
                HTT-SSB CS
  PF00808.18 50 kekrKTi 56
                k+ +K +
  MMETSP0890-20130614|7122_1 11 KAPKKAV 17
                4445544 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 4.4e-07
                HHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
  PF00808.18  8 vkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65
                + +++k+  pd++ isk    +++ ++    e++a eA+++   +k+ T++   i+ av
  MMETSP0890-20130614|7122_1 33 IYRVLKQVhPDTG-ISKKGMSIMNSFINDIFERIALEASKLSRYSKKATLSSREIQTAV 90
                789*****88888.******************************************998 PP

>> PF05560.6  Bacillus thuringiensis P21 molecular chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.072      81     134 ..      43      95 ..      27     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   PF05560.6  81 qtvlnnkgnssleeqvsdifdrcvymeveksssyiklleqdsnkvdlvvsllfi 134
                 +t + +kg s ++  + dif+r   +e+ k s y k     s +++  v l++ 
  MMETSP0890-20130614|7122_1  43 DTGISKKGMSIMNSFINDIFERI-ALEASKLSRYSKKATLSSREIQTAVRLMLP 95 
                 477899****************6.69*******************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 519.21
//
Query:       MMETSP0890-20130614|7125_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-35  115.5  19.7    2.1e-09   35.8   0.8    4.2  4  PF00036.27 EF hand
    2.6e-28   97.8  12.5    1.1e-15   57.4   0.6    2.2  2  PF13499.1  EF-hand domain pair
    3.8e-27   91.5  12.7    2.2e-09   36.2   0.1    4.3  4  PF13405.1  EF-hand domain
    3.1e-26   90.6  13.7    8.8e-13   47.5   1.1    3.8  4  PF13833.1  EF-hand domain pair
    9.9e-22   75.1  22.4    1.2e-06   27.4   0.3    4.8  5  PF13202.1  EF hand
    2.4e-06   27.0   9.0       0.11   12.1   0.1    3.4  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
    0.00013   21.8   3.0      0.062   13.2   0.1    2.1  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
       0.02   14.7   0.7         39    4.3   0.0    4.7  5  PF09373.5  Pseudomurein-binding repeat
      0.027   12.7   0.4       0.34    9.0   0.0    2.0  2  PF05872.7  Bacterial protein of unknown function (DUF853)
      0.089   12.7   0.3        1.5    8.8   0.0    2.2  2  PF03963.9  Flagellar hook capping protein - N-terminal region
       0.14   11.2   0.9       0.48    9.5   0.2    2.0  2  PF01595.15 Domain of unknown function DUF21
       0.15   12.2   4.3        3.8    7.7   0.2    2.4  2  PF13155.1  Toprim-like
       0.17   11.2   4.4          5    6.5   0.6    2.3  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.17   11.7   1.2       0.69    9.7   0.2    2.0  2  PF09025.5  YopR Core
       0.18   11.4   4.3       0.42   10.2   0.2    2.9  3  PF08766.6  DEK C terminal domain
       0.19   11.4   2.4       0.91    9.1   0.4    2.3  2  PF05974.7  Domain of unknown function (DUF892)
       0.42   10.8   5.5       0.18   12.0   1.1    2.4  2  PF03448.12 MgtE intracellular N domain
        2.7    7.6   6.4         21    4.8   2.5    2.8  2  PF11527.3  The ARF-like 2 binding protein BART


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.9e-12   2.2e-09       1      29 []      52      80 ..      52      80 .. 0.95
   2 !   35.8   0.8   2.8e-12   2.1e-09       1      28 [.      88     115 ..      88     116 .. 0.96
   3 !   20.4   0.1   2.4e-07   0.00018       1      28 [.     125     152 ..     125     153 .. 0.91
   4 !   35.1   1.3   4.9e-12   3.7e-09       1      28 [.     161     188 ..     161     189 .. 0.96

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.9e-12
                HHHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkkl 29
                e++eaF++fD+Dg+G+I+ +E+k a+++l
  MMETSP0890-20130614|7125_1 52 EIREAFDLFDTDGSGTIDAKELKVAMRAL 80
                79************************975 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 2.8e-12
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 e+k++++ +DkDg+G+I+f Ef+e++++
  MMETSP0890-20130614|7125_1  88 EIKKMISDIDKDGSGTIDFAEFLEMMTA 115
                 89************************86 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 e+ +aF++fD D +GkIsf  +k++ k+
  MMETSP0890-20130614|7125_1 125 EILKAFRLFDDDETGKISFRNLKRVAKE 152
                 7899*****************9999876 PP

  == domain 4    score: 35.1 bits;  conditional E-value: 4.9e-12
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 el+e+++e+D+DgdG I+ +Ef++++kk
  MMETSP0890-20130614|7125_1 161 ELQEMIDEADRDGDGEINEDEFLRIMKK 188
                 79************************98 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.6   1.4e-18   1.1e-15       2      66 .]      53     113 ..      52     113 .. 0.97
   2 !   45.3   3.3   8.4e-15   6.4e-12       2      66 .]     126     186 ..     118     186 .. 0.94

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 1.4e-18
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 ++eaF+l+D+dg+g++d  eL+ ++++l  + + ee++++    + ++Dk+g+G+++f+Efl+++
  MMETSP0890-20130614|7125_1  53 IREAFDLFDTDGSGTIDAKELKVAMRALDLNPKKEEIKKM----ISDIDKDGSGTIDFAEFLEMM 113
                 899**************************99999999999....*******************98 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 8.4e-15
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                 + +aF+l+D d +g+++   L+r++k lg++++dee++e+    ++e+D +gdG ++ +Efl ++
  MMETSP0890-20130614|7125_1 126 ILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQEM----IDEADRDGDGEINEDEFLRIM 186
                 5579*************************99999999999....******************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   2.9e-12   2.2e-09       1      30 [.      52      80 ..      52      83 .. 0.93
   2 !   19.3   0.1   8.2e-07   0.00062       7      27 ..      94     114 ..      88     119 .. 0.84
   3 !   22.5   0.2   7.5e-08   5.7e-05       1      31 []     125     154 ..     125     154 .. 0.91
   4 !   20.1   0.2   4.3e-07   0.00033       2      28 ..     162     188 ..     161     191 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.9e-12
                HHH---GCC-------B---HHHHHHH.H- CS
   PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrksl 30
                e+reaF+lfD+dg+G+ida+EL+ a+r +l
  MMETSP0890-20130614|7125_1 52 EIREAFDLFDTDGSGTIDAKELKVAMR-AL 80
                79************************9.55 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 8.2e-07
                 GCC-------B---HHHHHHH CS
   PF13405.1   7 klfDkdgdGkidaeELrdaLr 27 
                   +Dkdg+G+id++E++ +++
  MMETSP0890-20130614|7125_1  94 SDIDKDGSGTIDFAEFLEMMT 114
                 569***************998 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 7.5e-08
                 HHH---GCC-------B---HHHHHHH.H-- CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrkslg 31 
                 e+ +aF+lfD+d +Gki++  L+++ +  lg
  MMETSP0890-20130614|7125_1 125 EILKAFRLFDDDETGKISFRNLKRVAK-ELG 154
                 6789********************998.665 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 4.3e-07
                 HH---GCC-------B---HHHHHHH. CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                 l+e  +  D+dgdG+i+ +E++++++k
  MMETSP0890-20130614|7125_1 162 LQEMIDEADRDGDGEINEDEFLRIMKK 188
                 66667788*****************96 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   1.5e-07   0.00011      24      51 ..      50      77 ..      48      77 .. 0.95
   2 !   42.3   0.4   4.9e-14   3.7e-11       2      52 ..      65     114 ..      64     116 .. 0.96
   3 !    8.2   0.1    0.0022       1.6      31      44 ..     130     143 ..     122     148 .. 0.90
   4 !   47.5   1.1   1.2e-15   8.8e-13       1      52 [.     137     187 ..     137     189 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.5e-07
   PF13833.1 24 eeevdilfrefDtdgdGkisfeEFcvll 51
                ++e+++ f++fDtdg+G i+ +E +v++
  MMETSP0890-20130614|7125_1 50 KQEIREAFDLFDTDGSGTIDAKELKVAM 77
                79*********************99987 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 4.9e-14
   PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                 +G I+++eLk a+++l l+ +++ee+  +++ +D dg+G i+f+EF+++++
  MMETSP0890-20130614|7125_1  65 SGTIDAKELKVAMRALDLN-PKKEEIKKMISDIDKDGSGTIDFAEFLEMMT 114
                 799**********999***.*****************************97 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0022
   PF13833.1  31 frefDtdgdGkisf 44 
                 fr+fD d  Gkisf
  MMETSP0890-20130614|7125_1 130 FRLFDDDETGKISF 143
                 9************9 PP

  == domain 4    score: 47.5 bits;  conditional E-value: 1.2e-15
   PF13833.1   1 ekGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                 e+G+I++ +Lkr ++ lg + +++ee++++++e+D+dgdG i+++EF++ ++
  MMETSP0890-20130614|7125_1 137 ETGKISFRNLKRVAKELGEN-MTDEELQEMIDEADRDGDGEINEDEFLRIMK 187
                 69**********88989999.***************************9887 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.3   1.6e-09   1.2e-06       1      22 [.      53      74 ..      53      78 .. 0.90
   2 ?   -1.1   0.0       1.6   1.2e+03       4      11 ..      76      83 ..      73      83 .. 0.79
   3 !   22.6   0.4   5.2e-08   3.9e-05       1      25 []      89     113 ..      89     113 .. 0.89
   4 !   20.9   0.3   1.8e-07   0.00014       1      24 [.     127     149 ..     127     150 .. 0.91
   5 !   17.4   1.1   2.2e-06    0.0017       1      24 [.     162     185 ..     160     187 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.6e-09
                HHHHHHHH--S----B-HHHHH CS
   PF13202.1  1 lkdtFrafDlNgDGkIsreELk 22
                ++++F+ fD++g+G+I+++ELk
  MMETSP0890-20130614|7125_1 53 IREAFDLFDTDGSGTIDAKELK 74
                6778*****************8 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.6
                HHHHH--S CS
   PF13202.1  4 tFrafDlN 11
                + ra+DlN
  MMETSP0890-20130614|7125_1 76 AMRALDLN 83
                489***99 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 5.2e-08
                 HHHHHHHH--S----B-HHHHHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkrlv 25 
                 +k++ + +D++g+G+I++ E+ +++
  MMETSP0890-20130614|7125_1  89 IKKMISDIDKDGSGTIDFAEFLEMM 113
                 6788899**************8865 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 1.8e-07
                 HHHHHHHH--S----B-HHHHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                 lk+ Fr fD +  GkIs+  Lkr+
  MMETSP0890-20130614|7125_1 127 LKA-FRLFDDDETGKISFRNLKRV 149
                 567.******************98 PP

  == domain 5    score: 17.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHH--S----B-HHHHHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                 l+++ +++D +gDG I+ +E+ r+
  MMETSP0890-20130614|7125_1 162 LQEMIDEADRDGDGEINEDEFLRI 185
                 5677899**************885 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00015      0.11      21      72 ..      29      80 ..      12      93 .. 0.76
   2 !    8.2   0.2    0.0023       1.7      50      69 ..      92     113 ..      82     118 .. 0.74
   3 !   11.3   0.6   0.00026      0.19      11      70 ..     128     187 ..     117     190 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00015
   PF12763.2 21 pednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrli 72
                +e++ l g   +  ++ ++ +++++ + +dl d d  g++d +e+ +amr +
  MMETSP0890-20130614|7125_1 29 KEEEILXGGGKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL 80
                4555666666666666677788899999*********************963 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0023
   PF12763.2  50 dladidedg..kldfeefciam 69 
                  ++did+dg  ++df ef  +m
  MMETSP0890-20130614|7125_1  92 MISDIDKDGsgTIDFAEFLEMM 113
                 478999996337******8777 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00026
   PF12763.2  11 kyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciamr 70 
                 k + +f+    e  k++  ++  v k+   ++++++l+++ d ad d dg+++ +ef  +m+
  MMETSP0890-20130614|7125_1 128 KAFRLFDDD--ETGKISFRNLKRVAKElgENMTDEELQEMIDEADRDGDGEINEDEFLRIMK 187
                 555555443..33444444444444432257999***********************99997 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   8.1e-05     0.062      29     111 ..      26     110 ..      10     112 .. 0.79
   2 !    9.5   0.3    0.0011      0.83      48     111 ..     118     183 ..     110     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.1e-05
   PF10591.4  29 erdeekehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                 ++++e+e      k+++ + ++e k++++  F+ +Dt+  + ++ +El+   + l   + ++ ik++++  D d  ++i+++E+ 
  MMETSP0890-20130614|7125_1  26 QQHKEEEILXGGGKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALdlNPKKEEIKKMISDIDKDGSGTIDFAEFL 110
                 44444445555566666777889999**********************976655544889999********************97 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0011
   PF10591.4  48 nskeckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                 + k  +e++   F  +D ++ +++s + l+ + ++l     ++  +e+++++D d d++i+ +E+ 
  MMETSP0890-20130614|7125_1 118 SEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELgeNMTDEELQEMIDEADRDGDGEINEDEFL 183
                 556677788889999********************97644566799******************96 PP

>> PF09373.5  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.6   4.6e+02       7      17 ..      86      96 ..      85      98 .. 0.90
   2 ?    2.2   0.0      0.23   1.7e+02       1      13 [.     100     112 ..     100     113 .. 0.93
   3 ?   -0.1   0.0       1.3   9.6e+02       6      15 ..     122     131 ..     122     132 .. 0.90
   4 ?    4.3   0.0     0.052        39       2      21 ..     138     157 ..     137     160 .. 0.86
   5 ?   -0.4   0.0       1.6   1.2e+03       2      17 ..     174     189 ..     173     192 .] 0.80

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.6
   PF09373.5  7 yeeyldmasrv 17
                +ee+++m+s++
  MMETSP0890-20130614|7125_1 86 KEEIKKMISDI 96
                79******997 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.23
   PF09373.5   1 gsgkisyeeyldm 13 
                 gsg+i + e+l+m
  MMETSP0890-20130614|7125_1 100 GSGTIDFAEFLEM 112
                 69*********99 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.3
   PF09373.5   6 syeeyldmas 15 
                 s+ee+l++++
  MMETSP0890-20130614|7125_1 122 SREEILKAFR 131
                 89*****996 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.052
   PF09373.5   2 sgkisyeeyldmasrvlafi 21 
                 +gkis+++++++a++   ++
  MMETSP0890-20130614|7125_1 138 TGKISFRNLKRVAKELGENM 157
                 69***********9977666 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 1.6
   PF09373.5   2 sgkisyeeyldmasrv 17 
                 +g i  +e+l++ ++ 
  MMETSP0890-20130614|7125_1 174 DGEINEDEFLRIMKKT 189
                 689999****998775 PP

>> PF05872.7  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00045      0.34     120     181 ..      41     104 ..      39     109 .. 0.80
   2 ?    1.9   0.0     0.064        48     117     167 ..     113     161 ..     106     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00045
   PF05872.7 120 rllelndvqegvLnivfriaDeeGllLlDlkDLrallkevadna..kelskqygnvskasvgai 181
                 + +el++ q+  +  +f + D +G   +D k+L+  ++ +  n+  +e++k  + + k   g+i
  MMETSP0890-20130614|7125_1  41 KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALDLNPkkEEIKKMISDIDKDGSGTI 104
                 6689*********************************998655511556666677776666665 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.064
   PF05872.7 117 lLarllelndvqegvLnivfriaDeeGllLlDlkDLrallkevadnakels 167
                 + a++   +d++e +L+ +fr+ D++    + +++L+ + ke+++n  + +
  MMETSP0890-20130614|7125_1 113 MTAKM-SEKDSREEILK-AFRLFDDDETGKISFRNLKRVAKELGENMTDEE 161
                 45554.45788888887.7************************99976554 PP

>> PF03963.9  Flagellar hook capping protein - N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.002       1.5      24      49 ..      96     121 ..      61     121 .. 0.79
   2 ?    1.9   0.0      0.28   2.1e+02      23      41 ..     161     186 ..     142     189 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.002
   PF03963.9  24 ssakssssldkddFLkLLvaqLqnQD 49 
                  +++ s ++d  +FL++++a ++  D
  MMETSP0890-20130614|7125_1  96 IDKDGSGTIDFAEFLEMMTAKMSEKD 121
                 678888999*************9766 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.28
   PF03963.9  23 a.......ssakssssldkddFLkLL 41 
                 +       ++++   ++++d+FL+++
  MMETSP0890-20130614|7125_1 161 ElqemideADRDGDGEINEDEFLRIM 186
                 1334444477888889999*****98 PP

>> PF01595.15  Domain of unknown function DUF21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.76   5.8e+02     155     177 ..      84     100 ..      72     105 .. 0.74
   2 ?    9.5   0.2   0.00063      0.48     153     182 ..     149     180 ..     139     181 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.76
  PF01595.15 155 peeepavteeelralveeseeeg 177
                 p       +ee++++++   ++g
  MMETSP0890-20130614|7125_1  84 P------KKEEIKKMISDIDKDG 100
                 4......789******9887776 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00063
  PF01595.15 153 vkpeeepavteeelralveeseeeg..vleee 182
                 v +e ++++t eel+++++e+ ++g  +++e+
  MMETSP0890-20130614|7125_1 149 VAKELGENMTDEELQEMIDEADRDGdgEINED 180
                 333678899*************9884456565 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0051       3.8      13      78 ..      25      89 ..      19     110 .. 0.65
   2 ?    5.7   0.3     0.021        16      49      78 ..     129     158 ..     111     181 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0051
   PF13155.1 13 aqlgkenlkdtrslaslgtkltkalakyleekre.keivlalDnDeaGrkaaeklkkalkekg....kene 78
                +q +ke++    +l ++g++++ +l +    k+e  e    +D D  G   a++lk a+++      ke+ 
  MMETSP0890-20130614|7125_1 25 WQQHKEEE----ILXGGGKSKKFELTEEQ--KQEiREAFDLFDTDGSGTIDAKELKVAMRALDlnpkKEEI 89
                56666665....99999998655555554..4446779999**************9777765533332222 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.021
   PF13155.1  49 ivlalDnDeaGrkaaeklkkalkekgkene 78 
                     +D De G+  +++lk+  ke g++ +
  MMETSP0890-20130614|7125_1 129 AFRLFDDDETGKISFRNLKRVAKELGENMT 158
                 55579*************988777762222 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6    0.0066         5      90     146 ..      65     121 ..      38     132 .. 0.75
   2 ?    6.2   0.1    0.0082       6.2      90     123 ..     138     171 ..     127     188 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0066
   PF07106.8  90 elkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeankevtkee 146
                 +   +++el+ ++++L+ ++++ee+++ i+ ++k  + + +  e l+ +++++++++
  MMETSP0890-20130614|7125_1  65 SGTIDAKELKVAMRALDLNPKKEEIKKMISDIDKDGSGTIDFAEFLEMMTAKMSEKD 121
                 445688999************************999888888888887777766655 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0082
   PF07106.8  90 elkqeiselekelkkLtseltteelleeiqelkk 123
                   k ++++l+   k+L +++t eel+e i+e + 
  MMETSP0890-20130614|7125_1 138 TGKISFRNLKRVAKELGENMTDEELQEMIDEADR 171
                 5577899**********************99875 PP

>> PF09025.5  YopR Core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2    0.0009      0.69      27      91 ..      20      87 ..      10      99 .. 0.82
   2 ?    0.9   0.0       0.5   3.8e+02      72      96 ..     104     128 ..      82     170 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0009
   PF09025.5 27 qrellWqayq.....kgteqaaevgseLlapvkekLlarFggrllpvepaiDrpeLrallrefdplgaqr 91
                 r+ lWq+++      g  +++  + eL +  k+++ + F    ++ + +iD +eL+  +r+ d  +++ 
  MMETSP0890-20130614|7125_1 20 YRKKLWQQHKeeeilXGGGKSK--KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALDLNPKKE 87
                68999*****999994444444..4799*************9999999*************987544443 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.5
   PF09025.5  72 iDrpeLrallrefdplgaqrekvLl 96 
                 iD +e  +++ ++++    re++L 
  MMETSP0890-20130614|7125_1 104 IDFAEFLEMMTAKMSEKDSREEILK 128
                 5666666666666666666666553 PP

>> PF08766.6  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.26   1.9e+02      36      48 ..      43      56 ..      40      60 .. 0.85
   2 ?   10.2   0.2   0.00055      0.42      29      51 ..      72      95 ..      70      96 .. 0.83
   3 ?   -1.8   0.0       3.3   2.5e+03      35      38 ..     159     162 ..     147     170 .. 0.49

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.26
   PF08766.6 36 vdLs.erKafIkdl 48
                ++L+ e+K++I+++
  MMETSP0890-20130614|7125_1 43 FELTeEQKQEIREA 56
                68999******986 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00055
   PF08766.6 29 eLearl.gvdLserKafIkdliee 51
                eL  ++  +dL ++K++Ik++i +
  MMETSP0890-20130614|7125_1 72 ELKVAMrALDLNPKKEEIKKMISD 95
                666677679*************87 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 3.3
   PF08766.6  35 gvdL 38 
                 + +L
  MMETSP0890-20130614|7125_1 159 DEEL 162
                 2333 PP

>> PF05974.7  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.31   2.4e+02      45      69 ..      44      68 ..      40      80 .. 0.83
   2 ?    9.1   0.4    0.0012      0.91      52     141 ..      87     171 ..      81     179 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.31
   PF05974.7 45 eetegqierLeqilerlgaspsgkk 69
                e te+q++++++ ++  +++ sg  
  MMETSP0890-20130614|7125_1 44 ELTEEQKQEIREAFDLFDTDGSGTI 68
                679************9999888765 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0012
   PF05974.7  52 erLeqilerlgaspsgkkckamegliaegqelleeaaedeevkdaaliaaaqavehyeIAaYgtlialAeqlgekeaaklLeqtldeeka 141
                 e+++++++ ++++ sg   +  +++++ + + + e+ + ee++ a+        e  +I +++ l+++A++lge+ + + L+++ de+ +
  MMETSP0890-20130614|7125_1  87 EEIKKMISDIDKDGSGTI-D-FAEFLEMMTAKMSEKDSREEILKAF--RLFDDDETGKI-SFRNLKRVAKELGENMTDEELQEMIDEADR 171
                 667777777777777777.4.4455555555444446666666666..23333344444.79************************9864 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.4   2.6e+03      85      95 ..      45      55 ..      43      63 .. 0.52
   2 ?   12.0   1.1   0.00023      0.18       7      64 ..     115     172 ..     102     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 3.4
                S-CCCHHHHHC CS
  PF03448.12 85 ldeeereeiee 95
                l ee+++ei+e
  MMETSP0890-20130614|7125_1 45 LTEEQKQEIRE 55
                33444444443 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00023
                 HHTCCCS-HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HH CS
  PF03448.12   7 aelleeldeeeraallrllpkeeaaevleelsedlqeeliealpdeelaelleeldsD 64 
                 a++ e+ + ee ++ +rl +++e +++       +++el e+++deel e+++e d D
  MMETSP0890-20130614|7125_1 115 AKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQEMIDEADRD 172
                 2333344779999*************988888899******************98877 PP

>> PF11527.3  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.5     0.027        21      32     119 ..      39     122 ..      22     124 .. 0.79
   2 ?    2.6   0.0      0.13        98      34      68 ..     131     165 ..     122     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.027
                 HHHTT--SS-SSTTHHHHHHHHHHHHHHHHHHHHH-------THHHHH...SS-GGG----HHHHHHGGG-HHHHHHHHHHHHHHH-- CS
   PF11527.3  32 kcivFddeeenkleyteihkeYkelvekllesfleelgispeqfeeaclsesksknqaakkifqqllaaeDfeiFkkmMvqrnkelel 119
                 k+  F+ +ee+k+e +e ++ + +    +++   +el++ ++++  +   ++++ +++  +i +    + Df +F +mM+++  e++ 
  MMETSP0890-20130614|7125_1  39 KSKKFELTEEQKQEIREAFDLFDTDGSGTIDA--KELKVAMRALDLNP--KKEEIKKMISDIDKDGSGTIDFAEFLEMMTAKMSEKDS 122
                 67788999999999999999998877777765..47777788877777..55666666667777777788**********99988875 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.13
                 HTT--SS-SSTTHHHHHHHHHHHHHHHHHHHHH-- CS
   PF11527.3  34 ivFddeeenkleyteihkeYkelvekllesfleel 68 
                  +Fdd+e+ k++++++    kel e++ ++ l+e+
  MMETSP0890-20130614|7125_1 131 RLFDDDETGKISFRNLKRVAKELGENMTDEELQEM 165
                 68************999999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1016  (0.0743125); expected 273.4 (0.02)
Passed bias filter:                      641  (0.0468841); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.87
# Mc/sec: 528.85
//
Query:       MMETSP0890-20130614|7124_1  [L=931]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.3   0.0    2.6e-16   59.1   0.0    1.6  1  PF04564.10 U-box domain
    0.00016   21.1   0.0    0.00047   19.5   0.0    1.8  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0021   17.4   0.1     0.0073   15.6   0.0    1.9  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   5.8e-20   2.6e-16       4      69 ..     860     924 ..     858     928 .. 0.96

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 5.8e-20
                 GGB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHH CS
  PF04564.10   4 efldpitlelmkdPvilPsgitvDrstiekhllsrdktdPftreplteeelipnlelKekIdkfle 69 
                 ef++pitl +mk+Pvi+++g ++++++ie++l     t+P+t++ l+ + l pn++l+ +I++f  
  MMETSP0890-20130614|7124_1 860 EFICPITLSIMKEPVIAADGNSYEKTAIERWLAT-RGTSPLTNARLETRTLFPNRALQRAIARFRG 924
                 9*********************************.99**************************975 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-07   0.00047       9      46 ..     859     893 ..     854     903 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1e-07
                 XX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHHH CS
   PF13445.1   9 sifaCpiske.qsteqnpPvvLpCGhvisrealeklakg 46 
                 + f+Cpi+   +++    Pv+   G+ +++ a+e+++ +
  MMETSP0890-20130614|7124_1 859 PEFICPITLSiMKE----PVIAADGNSYEKTAIERWLAT 893
                 57**********88....******************984 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.93   4.2e+03      27      36 ..     600     609 ..     598     614 .. 0.77
   2 !   15.6   0.0   1.6e-06    0.0073      13      46 ..     862     894 ..     855     903 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.93
                 ES----EEEH CS
   PF11789.3  27 skkCnHvFEk 36 
                 +++ nH+FE 
  MMETSP0890-20130614|7124_1 600 NHESNHTFET 609
                 66779***95 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.6e-06
                 B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT CS
   PF11789.3  13 kCpltlkpfkePvtskkCnHvFEkeaIlkmlkrk 46 
                  Cp+tl+ +kePv+    n ++Ek+aI++ l ++
  MMETSP0890-20130614|7124_1 862 ICPITLSIMKEPVIAADGN-SYEKTAIERWLATR 894
                 6*************99866.9********99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.31u 0.40s 00:00:01.71 Elapsed: 00:00:01.12
# Mc/sec: 1991.97
//
Query:       MMETSP0890-20130614|7127_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-06   25.6   0.1    1.8e-05   24.4   0.1    1.6  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.3e-09   1.8e-05      20     132 ..      63     189 ..      52     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.3e-09
   PF04755.7  20 assddraeieelvkklealnptpapl.esl...dlLdGkWrLlYttskell........pllarkklpllkvg....eiyQtIdvenksvqNsvelsglpllegsvsvaakfevaspkrvelkFeravl 132
                 a+ dd ++    +++le+  pt +   e++     LdG+W+L+ t ++++           + + + ++++++    +  Q+Id+++ +v N v+ls l+  +  v v+  f +++ ++v++ Fe++ +
  MMETSP0890-20130614|7127_1  63 ARGDDNNAFLRSIEALESTRPTAKGFvEDPtlsRQLDGTWQLIGTLAAKVGedlnasaqRGVVNASGIVVDADseknKPIQIIDIDQAIVRNEVRLSILN-KDVIVCVSGAFAPFD-RKVNVDFEEIEI 189
                 66778888899999***999997643344411167*********999988866666666333444444544431111458*****************999.9999**********9.9*******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 694.94
//
Query:       MMETSP0890-20130614|7123_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-148  494.6   1.0   1.5e-148  494.3   0.7    1.0  1  PF00162.14 Phosphoglycerate kinase
  ------ inclusion threshold ------
       0.13   10.8   0.1       0.18   10.4   0.0    1.2  1  PF05893.9  Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> PF00162.14  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.3   0.7  2.2e-152  1.5e-148       5     384 .]      57     437 ..      53     437 .. 0.98

  Alignments for each domain:
  == domain 1    score: 494.3 bits;  conditional E-value: 2.2e-152
                 S--TT-EEEEEE-----B..TT.--BS--HHHHHHHHHHHHHHH---EEEEE------S..S--GGG-SHHHHHHHHHHHTS--EE-SS----HHHHHHHH-----EEE-S-GGG----T....T--HHHHHHHHHT-..SEEEEE----TTS--TTTTGGGGGS.T------HHHHHHHHHHHHCT---SSEEEE---------HHHHHHHTTT-SEEE-----HHHHHHH-----------GGGHHHHHHHHH-------EEE--SEEEEESSSSTTS--EEEEGGG-----E-EE---HHHHHHHHHHTT-SEEEE------TTSGGG----HHHHHHHH----EEEE----HHHHHHH---CCCSSEE------HHHHH--- CS
  PF00162.14   5 ldvkgkrvlvrvDlnvpl..kd.geitddtRiraalpTikellekgakvvllshlgrpkgkgkedklsLkpvakeLsellgkeVkfvddvvgeeaeaavkklkegevllLeNlRfykeeeskeekedeelakklasla..dvyVnDaFgtaHrahaStvgvakvl.kpsaaGflmekElealekalenperpvvavlGGakvsdklkvienllkkvdklligGgmantFlkakglevgkslveeelvetakellekakekgvklvlPvDvvvakefkkdaeskvvesdeipedvmilDiGpktielfakvikeaktvvwnGplGvfefeaFakGTkavakalaesgalsivGGgdtaaaveklgladkfshiStGGgAsLelLegk 384
                  d+++ +vl+r+Dlnvpl  kd ++itddtR+ra +pT++ l ekga+vv++ h+grpkg ++++k+s +p+++++s+l++++V  v+d++g+e+++a+k + +g v+lLeN+Rf+k+e+    k+++ +a++la+ +   +yVnDaFgtaHrahaSt+gv k++  p+aaGflmekEl++++ a+++p+rp++a+lGG+k+s+k+ vie++l+k+d++ligGgm++ F+ka+gl +g+slvee+++++a e+++ ak+kgv+++lP+Dvvva++f++da++k+v+ ++ip+++ +lD+Gp+t+++f+k+i+++kt+vwnGp+Gvfef+aFakGT+a+a+ +a+++a++ivGGgd++aavek++ladk+shiStGGgAsLelLegk
  MMETSP0890-20130614|7123_1  57 TDLSKAKVLIRLDLNVPLskKDgKTITDDTRLRAVVPTMNFLKEKGASVVVATHIGRPKG-EPDPKFSVEPIVSAFSKLIDTDVIKVNDCIGDEVRQACKGMPQGGVILLENVRFHKGET----KNESGFAEALAKDCgaTCYVNDAFGTAHRAHASTEGVVKYIsGPKAAGFLMEKELKYIKGAIDAPTRPLTAILGGSKISTKIPVIESMLDKCDNILIGGGMIFSFYKAMGLGIGNSLVEEDMISKAGEMIQAAKAKGVNMLLPTDVVVADKFEADANAKTVSIQSIPDGWLGLDVGPDTVAEFSKIIQSSKTIVWNGPMGVFEFDAFAKGTFAIAQEMANTDAITIVGGGDSVAAVEKAHLADKMSHISTGGGASLELLEGK 437
                 588999************9744369*********************************97.9**********************************************************....************985568*********************9978**************************************************************************************************************************************************************************************************************************7 PP

>> PF05893.9  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.6e-05      0.18     155     209 ..     382     436 ..     357     448 .] 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.6e-05
   PF05893.9 155 wkssdtkleeeivqnaDvviawGGeeaikaisk.klkpgvklikfGpkiSlavvdk 209
                 + +++ ++++e+ +n D++ + GG +++ a+ k +l+ ++  i+ G   Sl++++ 
  MMETSP0890-20130614|7123_1 382 FAKGTFAIAQEM-ANTDAITIVGGGDSVAAVEKaHLADKMSHISTGGGASLELLEG 436
                 466788999999.*********************************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:01.05
# Mc/sec: 1022.45
//
Query:       MMETSP0890-20130614|7129_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-15   56.8   0.0    4.2e-15   55.9   0.0    1.5  1  PF00730.20 HhH-GPD superfamily base excision DNA repair protein
      3e-08   32.7   0.0    8.7e-08   31.3   0.0    1.8  1  PF00633.18 Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.045   13.5   1.5      0.053   13.3   0.1    1.9  2  PF12936.2  KRI1-like family C-terminal


Domain annotation for each model (and alignments):
>> PF00730.20  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   9.2e-19   4.2e-15       2     119 ..      79     215 ..      78     218 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 9.2e-19
                 HHHHTTTS-HHHHHHHHHHHHHHTSSBCECET.TEEBHCSHHHHHHS-HHHHHHHHTT.-SHHHHHHHHHHHHHHHH................................S-SS.S--TTSHHHHHHHHHHCT.SSST..TTHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxx.xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
  PF00730.20   2 sailsqqtsdeaankiikrlverygnalddieigtfhfptpedladadeeelrelikelGfynrkakyikelarilv................................grpd.vlpvvDvhvrrilkrlglikeqk..ptpekvekkleell 119
                 + +ls+qt+d ++++ +++l+                ++t+  +++ +  +l eli+++Gf+nrk++y  +  +++v                                + +  ++++vD+hv+ri+++lg+  +    ++pe+++k++ e +
  MMETSP0890-20130614|7129_1  79 TLMLSSQTKDTVTAATMAKLRNH--------------GLTIDNILATTDKKLDELISQVGFHNRKTSYKSKQHKKIVsdfdgkvpntiddlcslpgvgpkmalitlrvnH-NItAGIAVDTHVHRICNQLGWTLTPGgtKQPEQTRKAI-ESW 215
                 679*******************9..............89*********************************************************************54.5559*****************85533349999999999.544 PP

>> PF00633.18  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.9e-11   8.7e-08       2      24 ..     144     166 ..     143     167 .. 0.96

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1.9e-11
                 HHHHHTSSHHHHHTCTT---HHH CS
  PF00633.18   2 leglipasreeLlalPGVGpktA 24 
                 ++g++p+++++L++lPGVGpk+A
  MMETSP0890-20130614|7129_1 144 FDGKVPNTIDDLCSLPGVGPKMA 166
                 89********************9 PP

>> PF12936.2  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1         2   9.1e+03       9      13 ..      19      23 ..       6      33 .. 0.48
   2 ?   13.3   0.1   1.2e-05     0.053      37      60 ..      99     122 ..      62     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2
   PF12936.2  9 vdeyy 13
                 ++++
  MMETSP0890-20130614|7129_1 19 REKKK 23
                22222 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.2e-05
   PF12936.2  37 esFgLtteeILladDkeLnqivsl 60 
                  ++gLt+++IL+ +Dk+L++++s 
  MMETSP0890-20130614|7129_1  99 RNHGLTIDNILATTDKKLDELISQ 122
                 579******************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1006  (0.073581); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.95
# Mc/sec: 781.97
//
Query:       MMETSP0890-20130614|7131_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 520.46
//
Query:       MMETSP0890-20130614|7130_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.8   0.9         14    4.8   0.0    3.1  3  PF06319.7 Protein of unknown function (DUF1052)
      0.052   13.4   1.2      0.052   13.4   0.8    3.3  4  PF12350.3 CTD kinase subunit gamma CTK3 C-terminus


Domain annotation for each model (and alignments):
>> PF06319.7  Protein of unknown function (DUF1052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.002        14      65      82 ..      23      40 ..       6      47 .. 0.78
   2 ?    3.3   0.0    0.0058        40      64      97 ..     176     209 ..     170     222 .. 0.87
   3 ?    1.3   0.1     0.024   1.7e+02     115     144 ..     247     277 ..     230     289 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.002
   PF06319.7 65 veikssiedfrvdrkWpe 82
                 eiks++ed+ vd+  ++
  MMETSP0890-20130614|7130_1 23 EEIKSAVEDMAVDEERED 40
                59***********98766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0058
   PF06319.7  64 iveikssiedfrvdrkWpeyrlhcdrlffathpe 97 
                 i e+k s++d  +d       lh  rl+f  h+ 
  MMETSP0890-20130614|7130_1 176 IKELKNSLDDEIADSNSITLELHRRRLYFQEHNT 209
                 679**************************98865 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.024
   PF06319.7 115 yGaellreap.ehrlaaatrkaltlrfaraa 144
                 y +++l+ +  +   a+a+rkal+l++  aa
  MMETSP0890-20130614|7130_1 247 YLTNILQSSIqQAAAATARRKALLLSYHDAA 277
                 5555555443034557799999999998776 PP

>> PF12350.3  CTD kinase subunit gamma CTK3 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.59   4.1e+03      40      52 ..      40      52 ..      23      68 .. 0.57
   2 ?   13.4   0.8   7.7e-06     0.052      17      67 ..     144     193 ..     143     196 .. 0.67
   3 ?   -0.1   0.1      0.12   8.5e+02      32      63 ..     214     245 ..     201     248 .. 0.80
   4 ?   -3.1   0.1       1.1   7.3e+03      36      63 ..     283     297 ..     276     304 .. 0.44

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.59
   PF12350.3 40 eklweetsdlged 52
                ++++ ++++++ed
  MMETSP0890-20130614|7130_1 40 DEIMHDATEVQED 52
                3344444444444 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 7.7e-06
   PF12350.3  17 hKRlrEniWvvpreksileedEfeklweetsdlgedddkedaeeleelnei 67 
                  KR+ E+ W++ ++k +l   Ef + +++  +  ++++++  +e+++ n+i
  MMETSP0890-20130614|7130_1 144 SKRQQEEYWAQAEKK-VLAVLEFHEEYDREVNAIKELKNSLDDEIADSNSI 193
                 6************77.77777775444444444446666666666666655 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.12
   PF12350.3  32 sileedEfeklweetsdlgedddkedaeelee 63 
                 +++ ++++   + +ts+++e++++++ ++++e
  MMETSP0890-20130614|7130_1 214 EYIADEDYGPEFSTTSPIDENLKESALQTANE 245
                 47888888888999999999999999988876 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 1.1
   PF12350.3  36 edEfeklweetsdlgedddkedaeelee 63 
                 e+E++ ++++             +e +e
  MMETSP0890-20130614|7130_1 283 EEEHTDAYTK-------------KEGDE 297
                 3344333333.............33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1622  (0.118637); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1036.35
//
Query:       MMETSP0890-20130614|7134_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-27   94.0   0.0    1.6e-26   92.6   0.0    1.8  1  PF13426.1  PAS domain
    1.7e-09   37.3   0.1    8.7e-09   35.0   0.0    2.2  2  PF00989.19 PAS fold
      3e-07   30.3   0.0    6.3e-07   29.2   0.0    1.6  1  PF08447.6  PAS fold
    2.9e-05   23.9   0.0    7.3e-05   22.6   0.0    1.7  1  PF08448.5  PAS fold


Domain annotation for each model (and alignments):
>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   4.6e-30   1.6e-26       3     103 ..     341     444 ..     339     445 .. 0.96

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 4.6e-30
   PF13426.1   3 gilildpd...gtilfaNeaalrllGytreevlgksirdlfpededeeavalleraleaggevevelelrrkdgeefpvevtvtpvrdedgevvgiivilrDit 103
                 +++i++p    ++i++a++ +++l+Gytreev g+++r+l++++++++ v+ ++ra+e++ e+++ l ++rkdg++f++++ ++p++d+ g+v+ ++++++D++
  MMETSP0890-20130614|7134_1 341 AFVITNPAlpdNPIVWASDEFAQLTGYTREEVCGRNCRFLQGPRTNPKSVEAVRRAIEEKHEASIVLLNYRKDGSTFWNRFFIAPLKDSTGRVTFYVGVQTDVS 444
                 57778877777********************************************************************************************8 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.51   1.8e+03      72      99 ..     157     183 ..     123     189 .. 0.55
   2 !   35.0   0.0   2.5e-12   8.7e-09       6     113 .]     334     443 ..     330     443 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.51
                 ECEEEEECCS.SSSSEEEEEEEEEECS- CS
  PF00989.19  72 srageisfklrdgrpihlevraspvrda 99 
                   ++++++++ + +++  e++  +++d+
  MMETSP0890-20130614|7134_1 157 TVIQDRTVRF-CESTRVDETTEQHTYDE 183
                 3344445555.55555555555555555 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 2.5e-12
                 CCCT--SBEEEES...----EEEETHHHHHHH-S-HHHHS---CCHHCSCCHCCTCCHHHHHHHHHH--ECEEEEECCS.SSSSEEEEEEEEEECS-S-E-.CEEEEEEES CS
  PF00989.19   6 ileslpdpifvvD...edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdaggeilgflgvlrdi 113
                 +++++  + ++++    d  i+++++++++l+G++reev+g++   l  + ++ + +e++++++e+++e++++  + ++ dg++++ +   +p+ d  g+++ ++gv  d+
  MMETSP0890-20130614|7134_1 334 VIQQAQRAFVITNpalPDNPIVWASDEFAQLTGYTREEVCGRNCRFLQGPRTNPKSVEAVRRAIEEKHEASIVLLNYRK-DGSTFWNRFFIAPLKDSTGRVTFYVGVQTDV 443
                 66777777777777778899************************9555555555*************************.************************9998886 PP

>> PF08447.6  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.8e-10   6.3e-07       2      90 ..     355     439 ..     354     440 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.8e-10
   PF08447.6   2 iyvsprveeilGyspeel.gkssyedwldlvhpeDrervrealeelllkkgevysfeyRirrkdGeyrWveargrvirdengkpvrvigv 90 
                 + +s+++ +++Gy++ee+ g++    ++ l  p   ++  ea+++ ++ ++++ s+   + rkdG++ W +  + +++d+ g+++ ++gv
  MMETSP0890-20130614|7134_1 355 VWASDEFAQLTGYTREEVcGRN----CRFLQGPRTNPKSVEAVRR-AIEEKHEASIVLLNYRKDGSTFWNRFFIAPLKDSTGRVTFYVGV 439
                 6799**************9988....6666666666666666666.666677899*********************************98 PP

>> PF08448.5  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.1e-08   7.3e-05      16     106 ..     353     444 ..     348     447 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.1e-08
   PF08448.5  16 rvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.pgeerhyelrllPlrdesGevigvlvisrDiT 106
                  +++a+ ++a+l g+++ee+ G+ ++ l  ++  +   +a+rr++e+++ ++ +    + +g++ +  +++ Pl+d+ G+v +++++ +D++
  MMETSP0890-20130614|7134_1 353 PIVWASDEFAQLTGYTREEVCGRNCRFLQGPRTNPKSVEAVRRAIEEKHEASIVLLNYRkDGSTFWNRFFIAPLKDSTGRVTFYVGVQTDVS 444
                 589***********************766777**************9877777664444699999999999****************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.96
# Mc/sec: 1235.62
//
Query:       MMETSP0890-20130614|7137_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-40  138.7   0.9    4.1e-40  137.8   0.4    1.5  1  PF08007.7 Cupin superfamily protein
    4.3e-09   36.1   0.6    1.4e-08   34.4   0.2    2.0  1  PF13621.1 Cupin-like domain
  ------ inclusion threshold ------
      0.012   13.8   0.2       0.02   13.0   0.2    1.3  1  PF03115.9 Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.4     9e-44   4.1e-40       2     256 ..      84     346 ..      83     365 .. 0.84

  Alignments for each domain:
  == domain 1    score: 137.8 bits;  conditional E-value: 9e-44
                 HHHHHHTTTTS-EEE----H.HHHHH--..----HHHHSS------------------------...---------------EEE.ETTEEEEE-GGGT-HH.HHHHHHHHHH..-----EEEEE--.------SEE-SSEEEEEEEE--EEEEEE-.......-SSTT-SS-EE--TTT--..--SEEEEE----EEEE----EEEEE---...----EEE.EEEEE-TT..-----HHHHH----HHHHH-HHHH--.--TTTTT----H CS
   PF08007.7   2 eeFlreyWqkkpllirralp.afagllspddLaeLaeeeevearlikgerdkaewkvsrgpleerr.lrklpakdwtlLvqgvslwkkavaqLlqpfrfepe.wrlddvmesf..slvgsnvYatpg.gsqgvgpHyDdyDVfllQleGrkrWrvyk.......ptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvaed..esltlSvg.lraptaaellesvldllldklpeiderlrdallrav.qargeidsdsid 256
                 ++F++++ ++++l+i ++ + + ++l+s++d+++ + e e        ++d + +k ++g+ ++     +  +++w   + ++      +++L +p++ +++   l++ +e    + v +n+Y+tpg g+qg++pHyDd+DVf+lQl+G+krW+v+         +  ++++++ e++++l + +  + + L+pG lLYlPrg+iHq+++ +   sl+l+++  r +++++lle +l+  l++++  + +lr++l+r++  ++g +++++++
  MMETSP0890-20130614|7137_1  84 KRFYDDISERRALHISGRGEkYWNDLMSIEDIFRVLVETEARN-----GIDVDVCKLKNGKRQNIMpPTDRVTRAWAEKQYAAGS----TIRLRCPQQHLDQiHSLCQGLEDEfgADVSANAYLTPGeGEQGFAPHYDDVDVFILQLHGEKRWQVWTprdealkLPRYSSDDYTCESIDQLHKYSIPITLHLAPGELLYLPRGFIHQAQTINqeSSLHLTIStNRLNSWTDLLETLLNNGLQAASSSHLNLRSSLPRDMfHYMGLQHQENQE 346
                 68**************988879**************9999888.....5677788888888777321233344447776666666....*********************9888************8468***************************77665554444556677778888888899999*********************99889*******889*********************9***********98888888776553 PP

>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2   3.1e-12   1.4e-08      97     240 ..     157     295 ..       3     300 .. 0.54

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.1e-12
   PF13621.1  97 ylylqnsnlaeefpelredsdlpfapelfgkkpe......avnlWl..GnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvdvenpdlekfprfkda.kalevelepGevLYlPalWfHeVssss.eegvhiav 240
                   y + s ++  +p+ + d+  ++ + l     +      ++n +l  G++++  + H+D ++ +  +++G+Kr+ ++ p d   l+           ++++ +++  e   ++ +   +++ +l pGe LYlP ++ H+ ++ + e+ +h+++
  MMETSP0890-20130614|7137_1 157 KQYAAGSTIRLRCPQQHLDQIHSLCQGLE----DefgadvSANAYLtpGEGEQGFAPHYDDVDVFILQLHGEKRWQVWTPRDEA-LK----------LPRYSSDDYTCESIDQLHKYsIPITLHLAPGELLYLPRGFIHQAQTINqESSLHLTI 295
                 33334444444444444332222222111....122333355555511455578889***********************9876.44..........33344444445444444444489*********************9987755566554 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   4.5e-06      0.02     575     692 ..     259     377 ..     226     399 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.5e-06
   PF03115.9 575 tasvsvelksgewylltsttiveaavkegwvwlnvelknntayladqvlahlitp.lgeaskilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrf 692
                 +   +++l  ge  +l    i++a++ ++   l+  +++n      ++l +l++  l++as+   +lr++lp+++ + ++l++++ +++e+  e++ ++e ++ e+++++d+ d + ++
  MMETSP0890-20130614|7137_1 259 SIPITLHLAPGELLYLPRGFIHQAQTINQESSLHLTISTNRLNSWTDLLETLLNNgLQAASSSHLNLRSSLPRDMFHYMGLQHQENQENEQLIEQRNTVEIKNDEEDNNDDDCDSIAQV 377
                 55556666667777777778899888888888888999988887777777777642778888899*******************99988888888888888877778888877765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1041  (0.076141); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.94
# Mc/sec: 1458.21
//
Query:       MMETSP0890-20130614|7133_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-37  128.0   0.0    3.7e-37  127.3   0.0    1.4  1  PF00270.24 DEAD/DEAH box helicase
    1.2e-22   79.3   0.0    3.7e-22   77.8   0.0    1.8  2  PF00271.26 Helicase conserved C-terminal domain
      1e-07   31.8   0.0    2.1e-07   30.8   0.0    1.5  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.075   12.1   0.0        2.4    7.2   0.1    2.3  2  PF12846.2  AAA-like domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0   1.1e-40   3.7e-37       2     170 ..      82     249 ..      81     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: 127.3 bits;  conditional E-value: 1.1e-40
                 HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHH..T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCT.TTHHHHHHHHHHSHHTTTSEEEEEESS-THHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvl..dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsq.gfsdqlnqilqilcdgkrlqvivlSATlpkdv 170
                 ++Q e+ip+++ g d++++a+ G+GKT++f+++ l +l      + +  +l+++ treLa q+ n++ +f ky pk+rv + +gg ++ ++++s    + +++ivvgTpgr++ lv+++ l+ls+++ +V+DE+drll+  ++++++++i +++ +  + qv+++SATl kd+
  MMETSP0890-20130614|7133_1  82 EVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQLEPV---DGEVSVLVLCHTRELAFQIKNEYARFSKYlPKVRVDVFYGGIPITQNKASLKaeESRPHIVVGTPGRILALVKSKDLDLSKLKHFVMDECDRLLESiEMRKDIQDIFRATPH--QKQVMMFSATLAKDI 249
                 79******99999***********************99653...4789***************************************88555544489888****************9999******************989999********955..58*********9887 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   6.8e+03       7      27 ..     154     174 ..     152     185 .. 0.74
   2 !   77.8   0.0   1.1e-25   3.7e-22       2      78 .]     320     405 ..     319     405 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2
                 ---EEEE-TTS-HHHHHHHHH CS
  PF00271.26   7 gikvailhgelpqnereeile 27 
                 +++v +++g++p  ++++ l+
  MMETSP0890-20130614|7133_1 154 KVRVDVFYGGIPITQNKASLK 174
                 577888888888777776665 PP

  == domain 2    score: 77.8 bits;  conditional E-value: 1.1e-25
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS.........BSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl.........prsvtsyiQriGRtgRag 78 
                 ll +++++++++h++++q+er    ++f++ k+++lv+t+ ++rGid++ vn Vin+d+          +  ++y++r+GR+gR+g
  MMETSP0890-20130614|7133_1 320 LLCECNFPSICIHSGMTQEERINRYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFpevkegaanTTASDQYLHRVGRAGRFG 405
                 577899*****************************************************888888887777778**********97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   6.2e-11   2.1e-07      30     182 ..      99     245 ..      93     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6.2e-11
  PF04851.10  30 ivmaTGtGKTlvaasliarlar........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile......fkkafllglTATp 182
                  ++  G+GKT v     a l++         +l+l++++el  q ++e+ +f++    ++k  + v + + +++++++++k +e++      i++ t  ++ + +++           ++  l + + +++DE+ rl ++ ++r+ ++       +++ ++ ++AT 
  MMETSP0890-20130614|7133_1  99 CQAKSGMGKTAVFVL--ATLHQlepvdgevSVLVLCHTRELAFQIKNEYARFSKY---LPKVRVDVFYGGIPITQNKASLKAEESR----PHIVVGTPGRILALVKS-----------KDLDLSKLKHFVMDECDRLLESIEMRKDIQdifratPHQKQVMMFSATL 245
                 57788********95..5566666*************************555554...6777888999999999999999996655....89**********99985...........566677888**********99999666555588899899999******7 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.018        63       8      54 ..     101     158 ..      97     169 .. 0.72
   2 ?    7.2   0.1    0.0007       2.4     245     276 ..     200     235 ..     166     258 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.018
   PF12846.2   8 GppGsGKS..vllkkl.........vlqllargprvviiDpggeysglaralggqvid 54 
                 +++G+GK+  + l +l         v+ l+   +r + + +++ey+++ ++l+++ +d
  MMETSP0890-20130614|7133_1 101 AKSGMGKTavFVLATLhqlepvdgeVSVLVLCHTRELAFQIKNEYARFSKYLPKVRVD 158
                 799*****863333335556666666666667788888899**********9865555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0007
   PF12846.2 245 d....kllviDEahrllgspegadfldelaregRkf 276
                 d    k++v+DE+ rll s e+++ ++++ r   ++
  MMETSP0890-20130614|7133_1 200 DlsklKHFVMDECDRLLESIEMRKDIQDIFRATPHQ 235
                 13455**************99999999888866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.94
# Mc/sec: 1142.09
//
Query:       MMETSP0890-20130614|7138_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-52  176.2   0.0    1.2e-51  175.9   0.0    1.2  1  PF05028.9 Poly (ADP-ribose) glycohydrolase (PARG)


Domain annotation for each model (and alignments):
>> PF05028.9  Poly (ADP-ribose) glycohydrolase (PARG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   8.6e-56   1.2e-51      46     335 ..      87     353 ..      26     358 .. 0.88

  Alignments for each domain:
  == domain 1    score: 175.9 bits;  conditional E-value: 8.6e-56
   PF05028.9  46 svllsqeqiaallalsffcllpkrdseekklpsinfkklfsslkkkrsesqaeKlkcllhYFkrvsekaptglvsferkslksaedaeewkksetkllkveveseglIEdqskealqvDFAnkylGGGvLssGcvQEEIrFvinPEllvsmlf..lekledneaiiivGaerfssytGYassfrfegeyvdkkevdkfkrrkteivaiDAlkfkeaklkqykkesllRelnKAfigFldqskesekkkgvatgnwgCgafgGdkeLktliqllaasqakRpli.yytfgdeeL 335
                 ++++s  qi +ll+ls f  lp +   ++ +   + ++++ +     +e   ++l cll+Y k+    +  +++++ r+++   +d+++  +s++kl++v+  +e++IEd+ + + +vDFAn  l  G +   + QEEI+F i PEl ++ml+   e ++dneaiii Ga  fs y+GY +sfrf+g      +v k + r  +i+aiDA+   +++ +q+ k+sl R+l KA+ gF d       + +v+tg wg gafgGd+ Lk+l q++aas a+ + + y+ + + +L
  MMETSP0890-20130614|7138_1  87 QAQMSTGQIHSLLSLSIFVGLPYH--LQRLV---SHARFYDY---MCNEVGLARLACLLTYLKEPPPMVDSQFLTISRRRT--LDDVSDLISSNQKLCSVT-LKENKIEDS-TASHHVDFANARLHIGRIIPSATQEEILFSIKPELFAAMLLesHEPMRDNEAIIISGARCFSTYSGYLNSFRFTG------PVTKIESRPPSIIAIDAVVV-SSYNEQFAKSSLERDLLKAYLGFRD-------ADSVSTGGWGTGAFGGDPILKFLQQWVAASLANVNNLdYSCYANPSL 353
                 6789999**************999..33333...45555553...3478999**************************999..9*****************.67889****.9999************************************944478***************************77......5678888999*********5.9**********************93.......33499*************************99987777998888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:01.23
# Mc/sec: 888.41
//
Query:       MMETSP0890-20130614|7148_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00029   20.4   0.2       0.26   10.7   0.0    3.0  2  PF09353.5  Domain of unknown function (DUF1995)
  ------ inclusion threshold ------
      0.087   11.6   0.0        3.5    6.3   0.0    2.1  2  PF01665.11 Rotavirus non-structural protein NSP3


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0013         9       4      36 ..      83     114 ..      81     144 .. 0.79
   2 !   10.7   0.0   3.9e-05      0.26     158     199 ..     175     224 ..     140     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0013
   PF09353.5   4 sleeaieqakealaaaLkagkrrllielefpgl 36 
                 +  ea+ +a ea+ +aL+ ++rr+ ++ +  +l
  MMETSP0890-20130614|7148_1  83 DVLEAARKAGEATTEALR-SNRRVIVDCRAQEL 114
                 67799*************.99******999998 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 3.9e-05
   PF09353.5 158 vvYylrpleysg.......kgalfrcypepWqlfkede.nggyklvaefe 199
                 ++Y++ pl+ +           +fr++p pW l+   + +++y+ v +f+
  MMETSP0890-20130614|7148_1 175 TAYAIWPLRLRAvggedgiRLCVFRRFPRPWALYLAPTdDDEYVKVFNFP 224
                 6888888887778889999999*************999779999987775 PP

>> PF01665.11  Rotavirus non-structural protein NSP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0037        25       6      79 ..      32     104 ..      27     117 .. 0.82
   2 ?    6.3   0.0   0.00052       3.5     246     280 .]     135     169 ..     105     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0037
  PF01665.11   6 svesilnaafeaAvaslksaledagisedfaeviarvkskykdvldDsGvknnliGkAatidkALngklksaeR 79 
                 +++ + n   +   + ++  l + g  e ++e++a ++ ++   l +sG +n ++  A+   +A  + l+s  R
  MMETSP0890-20130614|7148_1  32 MINVLKNDVMQKRYSHMAPLLAEDGAAESSDEIEA-FRRRMTSELTESGPENDVLEAARKAGEATTEALRSNRR 104
                 55555555566666777788899999999999987.99*********************999999999888766 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00052
  PF01665.11 246 elksmelddeikkdyeqelnslivinaknaiddie 280
                 e + +  +d++ +  +q+ ++l+vin+ +aid ie
  MMETSP0890-20130614|7148_1 135 EANLWFSPDDLVTFRSQVSDPLVVINPRFAIDPIE 169
                 4566777899999999****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 833.80
//
Query:       MMETSP0890-20130614|7150_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-17   63.6   0.0    4.6e-17   62.4   0.0    1.5  2  PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
    1.5e-16   60.3   0.0    2.3e-16   59.7   0.0    1.3  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   6.7e-21   4.6e-17       1     112 [.      10     113 ..      10     115 .. 0.89
   2 ?   -3.8   0.0         2   1.4e+04      52      72 ..     200     222 ..     196     226 .. 0.68

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 6.7e-21
   PF14226.1   1 iPvidlspssedreevakelreAceevGffqvvnhgvpeelieevfeaarefFalpleeKekl..arspefrgysrlgsektdg.kldwkesfdlgtelpeddplkplegpnqwP 112
                 +Pvid+s  +++ +e+ ++l +A++evGff ++nhg++e+ ie +f++ar+fF+  + +K  l     + + gy+ +++ + ++  +d+kes+++ t          +    +wP
  MMETSP0890-20130614|7150_1  10 VPVIDMS--RPT-SEIEEALFSAAQEVGFFSLINHGIDEKEIEAIFDTARHFFNENQTKKTILspYEAKLNAGYEYMAQVRPSTgLPDVKESMQITTRE--------TSMIGRWP 113
                 8******..775.8999*******************************************99986666899*****999998889**********9982........23455555 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2
   PF14226.1  52 fFalpleeKeklarsp..efrgy 72 
                 +F+lp  e +++a +p  +  g+
  MMETSP0890-20130614|7150_1 200 LFQLPGNEGLECAANPrlGKVGW 222
                 68999999888854442555555 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   3.4e-20   2.3e-16       4      98 ..     166     276 ..     163     277 .. 0.93

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 3.4e-20
                 EEEEEEEES.......--E-EEEEEEEESSSCEEEEEEE...T--EEEEEE-EE...SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----.....CSEEEEEEEEEE CS
  PF03171.15   4 qlrvnrYpp.......pekglglgpHtDnenriltillq...ddggglqfrked...kwidvppdpvallvnfgdvllvltngryksvlHrvlpnt.....rgeRislafflr 98 
                  lr+++Ypp       p  +++ g+HtD     +t+l+q   ++g ++   +      wi+v+p +++++vn+gd+l  +++ r+ s+lHrv+  +     +++R+s+a+f +
  MMETSP0890-20130614|7150_1 166 TLRMLHYPPipqdssyPPGSMRAGSHTDW--DAITLLFQlpgNEGLECAANPRLgkvGWIPVDPVQGGVAVNIGDMLARWSDSRLLSNLHRVRMPNnpaeqAKSRYSIAYFAQ 276
                 589*************889**********..*********998888888887779999***********************************9999**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:01.21
# Mc/sec: 631.77
//
Query:       MMETSP0890-20130614|7147_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.49   10.2   0.0    1.9  2  PF08153.7 NGP1NT (NUC091) domain


Domain annotation for each model (and alignments):
>> PF08153.7  NGP1NT (NUC091) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.11   1.4e+03      85     110 ..      22      47 ..      13      63 .. 0.72
   2 ?   10.2   0.0   3.6e-05      0.49      43      75 ..     111     143 ..     105     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.11
   PF08153.7  85 kkkvkiletesfeetFgpkaqRkrpk 110
                 kk+ k l   +f+ tF++ +  k+ +
  MMETSP0890-20130614|7147_1  22 KKTLKSLVDLPFAATFADTKGEKKWE 47 
                 44555556668999998877777654 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 3.6e-05
   PF08153.7  43 visqeaLekfreeleekkkdpysvllkrskLPl 75 
                  i+q+++  +re++++k++d y+ ++ + kLP 
  MMETSP0890-20130614|7147_1 111 EIDQDTFYLIRESIHHKEEDVYRAVILKVKLPN 143
                 599*****************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.66
# Mc/sec: 795.15
//
Query:       MMETSP0890-20130614|7153_1  [L=859]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.28u 0.40s 00:00:01.68 Elapsed: 00:00:01.74
# Mc/sec: 1183.03
//
Query:       MMETSP0890-20130614|7155_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   23.7   1.0    1.8e-05   23.5   0.7    1.0  1  PF03092.11 BT1 family


Domain annotation for each model (and alignments):
>> PF03092.11  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.7   1.3e-09   1.8e-05      14     134 ..       4     121 ..       1     129 [. 0.77

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.3e-09
  PF03092.11  14 amlkdrlgidparyqrlsglatlgwvikaliallsDgfallGytkrwYlalscllgaifallygllpakeasakvaaafiflsslgkal..vdvlsdglyselarqepkagpslvSliWlvil 134
                  ++ +++++d+++ ++  ++a+l+w+ ++li  ++     +G  +   l+ s++ +ai  +l+g+  +  + +++  +++++ ++ +al   dv+++g +s+ +r+ p+++ ++  l+ +v  
  MMETSP0890-20130614|7155_1   4 KYFLSEMQADAKQRSITVQMASLPWAFRPLIDTMTRRT--FGTGRA--LVFSMIAAAIALILLGSSGGGDSMLTLPMVALLFVTVEVALcaHDVVANGEISRAIRSSPQKAHDIAALVYFV-R 121
                 5788999************************9998764..555554..56666666666788888877777666666666666666655227*******************9999999854.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.74
# Mc/sec: 443.65
//
Query:       MMETSP0890-20130614|7159_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-19   68.6   0.0    5.7e-19   68.3   0.0    1.1  1  PF01501.15 Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   4.2e-23   5.7e-19      89     249 ..       2     178 ..       1     179 [. 0.89

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 4.2e-23
  PF01501.15  89 RlylaelfpkydK..viyLDaDivvvkdideLfdidlggkvlgaved..................kyfkqyleksealseeesspk.kcyfnaGvlvfnlkkwrkenltekliewlnkkerllklgdqdllnlvfkgkvkpLdprynvlglgy....ksskksrkealeeaaviHYigksKPWlel 249
                 R+yl++lfp+++   viyLD+D++  +di+ L +     +++ a +d                  k+ +   + + + +  ++ p+    fn+Gv+v++ ++w+++ lt+ ++ w+ ++      g+q ++nl+ ++++  + +++n+   +      +s ++     +++ + H++g++KPW ++
  MMETSP0890-20130614|7159_1   2 RIYLPNLFPELNDqlVIYLDCDVLLHDDIAFLAQ-----EAARALNDtqarivnnrdvpavaatlKTRDHAEYGEIWRRRYPTRPRdIAVFNSGVMVIDFSRWTAQGLTKEVEGWIDQNLI---GGSQLPINLAVASNFALIGSKWNCPIRNGkvdeVISVHDGMCS-KNPGIRHWTGRAKPWVKN 178
                 9*******99985559****************99.....5566777788899999**********8888888899999999888883467*************************877777...89************************99988866666777776.9**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 645.42
//
Query:       MMETSP0890-20130614|7156_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-30  105.0   0.0    4.7e-30  103.7   0.0    1.8  1  PF00752.12 XPG N-terminal domain
    1.2e-27   95.6   0.1    3.2e-27   94.3   0.1    1.8  1  PF00867.13 XPG I-region
    4.2e-08   33.2   0.5      1e-07   31.9   0.0    2.0  2  PF01367.15 5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.072   12.4   1.0        0.3   10.4   0.7    1.9  1  PF12813.2  XPG domain containing


Domain annotation for each model (and alignments):
>> PF00752.12  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   1.4e-33   4.7e-30       1     101 []      22     134 ..      22     134 .. 0.97

  Alignments for each domain:
  == domain 1    score: 103.7 bits;  conditional E-value: 1.4e-33
                 X-----HHHHHHH-..GEEEEEGGGG---EEEEEHHHHHHHHHHHSB.----B-BS..........-TTT---HHHHHHHHH---EEEEEE-----GGG---HHHHHHHHHHH CS
  PF00752.12   1 MGikgLlkllkeva..airsvsiealegkklaiDaslwlyrfliavreqlgnalen..........tshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserrqea 101
                 MGikgL+ l++e a  a++++++e++ g+++aiDas+ ly+flia+r q g+              tsh++g+f+r++rll  gikP++VFdgk+p++k +el+kr+++r+ea
  MMETSP0890-20130614|7156_1  22 MGIKGLMGLINEEApgAVKEMEVESYMGRIVAIDASMALYQFLIAIRAQGGEGTAAavltnaegeqTSHIQGMFNRTIRLLSAGIKPVYVFDGKPPNMKGGELAKRQAKRAEA 134
                 *************************************************999888888889*************************************************985 PP

>> PF00867.13  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.1   9.3e-31   3.2e-27       1      94 []     173     262 ..     173     262 .. 0.91

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 9.3e-31
                 HH----EEE-SS-HHHHHHHHHH----SEEE-SSTHHHH----EEEESCC--STTTT--SS-SCEEEEEHHHHHHHCTS-HHHHHHHHHH---T CS
  PF00867.13   1 klmgipyvvApgEAeaqcayLarsglvdavlseDsDlllfgapkvirnlskkkskkkkkkkekkvevidlekvleelgltreqfidlaillGcD 94 
                 ++mg+p+v+Ap+EAeaqca L+r g+++a+ +eD+D+l f a++ +r+l+ ++skk     ++ + +i+  ++l+ +glt++qf+dl+il+GcD
  MMETSP0890-20130614|7156_1 173 RAMGVPVVEAPCEAEAQCAELVRGGKAYAAGTEDMDVLTFAATRQLRKLTFSSSKK----ADQRIVEINHARLLNDIGLTNDQFVDLCILCGCD 262
                 58***********************************************9333233....46778899999**********************9 PP

>> PF01367.15  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.2   1.1e+04      56      68 ..     130     142 ..     118     161 .. 0.53
   2 !   31.9   0.0   3.1e-11     1e-07       2      86 ..     248     340 ..     247     359 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.2
  PF01367.15  56 lrekleaakeeak 68 
                  r  ++++ eea 
  MMETSP0890-20130614|7156_1 130 KRAEAQKKLEEAR 142
                 2233333333333 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 3.1e-11
  PF01367.15   2 tpeqiidlkaLvGDsSDnipGvkgiGektAakLLkeygslenilenldklkkkklr..........ekleaakeeaklskkLatlktdvplelsl 86 
                 t +q++dl +L+G   D    + ++G+ktA kL+k++gs+e+il+++++ +k+  r          +  ++ak  a++  +L++ ++ vple + 
  MMETSP0890-20130614|7156_1 248 TNDQFVDLCILCG--CDYTNRIDKVGPKTALKLIKQHGSIEAILKSMSTSPKEYDRvpdewldadtRSKRKAKRRAQALARLTNTENRVPLETTK 340
                 6789********9..6888889***********************99999997777999887754444444444555555555555555555443 PP

>> PF12813.2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   8.7e-05       0.3      13      84 ..     172     338 ..     159     477 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.7e-05
   PF12813.2  13 LkerwkfavitevvpgEADkycAilArklgc.aVLtsDSDllvhdlgpegsviflqslelks.................................................................................................neqesklslra 84 
                 L++    +v+++  p+EA ++cA l+r  ++ a  t+D D+l + ++++ + + + s +  +                                                                                                  ++e+++ l++
  MMETSP0890-20130614|7156_1 172 LRAM---GVPVVEAPCEAEAQCAELVRGGKAyAAGTEDMDVLTFAATRQLRKLTFSSSKKADqriveinharllndigltndqfvdlcilcgcdytnridkvgpktalklikqhgsieailksmstspkeydrvpdewldadtrskrkakrraqalarlTNTENRVPLET 338
                 5555...999*********************9999***********9999888888777766555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       917  (0.0670714); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:00.74
# Mc/sec: 1891.18
//
Query:       MMETSP0890-20130614|7160_1  [L=1164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-22   79.3   0.0      3e-22   78.8   0.0    1.3  1  PF02463.14 RecF/RecN/SMC N terminal domain
    4.3e-15   55.6   5.6    7.3e-15   54.8   0.1    4.0  3  PF06470.8  SMC proteins Flexible Hinge Domain
    6.7e-08   32.7   0.0    1.2e-07   31.8   0.0    1.4  1  PF13304.1  AAA domain


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   6.5e-26     3e-22     135     214 ..     315    1097 ..     102    1103 .. 0.73

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 6.5e-26
                  T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE--EE. CS
                  x................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  135 e................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklvgvtkv 214 
                  +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                +LSgGe++L++laLlfAi+ v++ap+ llDe+da+LD++n +++a +  +++ ++Q++ ++++e ++ +a+ lvgv k 
  MMETSP0890-20130614|7160_1  315 QqekqksilvrqlatakieetnkakaleakldqvaqakqsiredieqlgtntyqsfdfgarridrlqtalgkhrvlgrlldvckpsqrkydkalaaamgslteaivvdsrstavqcvsilrdhrlgfasflpadalrlgdeaqlartddilrtlghgyklakdlvvlntlenenidesndregairraldlalegtvvaddlksarvlrydqpppglikvvtlsgavvtagamtggappraqraavnswrradierldgerkqlmseleaarrkrraledidlpqlerklaaqqalkaaqlhetnqreerqrvenerliraqnlyeaaqnsdeyaqlvivatfadarleelrqgslssaekrilnplaqrfdldlddllgaaaarglrrgyasyaaneivtsqmqtartkakvraqaeyekrrlaeleagiqarqqshlpqleatlntirskynqleiscteasetlttveedeqaairkndndtrraplaearqdaidqlraalqkksqhekvvrefdakikatmaqarldhirvplqqnddeneefdlnaaeaelfsrgnddddsdeeeedalqkrrrarraeldkiearaqklapnmkasercealadelkaadaigkalrdaarsaaaifedikqrrrtlfsscldsvasrlatlyaeltsssrhptggaaslapldadepylaglafhatppskrfcdihQLSGGERALASLALLFAIHDVHQAPFLLLDEVDANLDASNLHQLAAFAASRT-HTQIVAVTHKEPFYVHAQFLVGVAKD 1097
                  0555555555555555555555555555555555555555555555555555566666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777788888888888888888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999**************************************************************************************************************************************************************9988877.9**********************985 PP

>> PF06470.8  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       0.5   2.3e+03      21      51 ..     288     318 ..     277     361 .. 0.66
   2 !   54.8   0.1   1.6e-18   7.3e-15       3     118 ..     388     521 ..     386     523 .. 0.90
   3 ?   -0.1   0.1      0.17   7.7e+02      53     103 ..     892     940 ..     879     956 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.5
   PF06470.8  21 Aveaalgnrlqaivvedeetakkiieflkka 51 
                 A+ +   ++ q+++v  +++a++i    +++
  MMETSP0890-20130614|7160_1 288 ALIQPTQPSSQNFLVVEDDDAQEISPSQQEK 318
                 5555556777888888888888887777733 PP

  == domain 2    score: 54.8 bits;  conditional E-value: 1.6e-18
   PF06470.8   3 gvlGrladliev.degyekAveaalgnrlqaivvedeetakkiieflkkanagratflpldrikqknssdskneve.................rpggavplidlveypdeklrkalryllgdtlvvdsldeAle 118
                 +vlGrl+d++++ +++y+kA++aa+g+  +aivv++  ta ++++ l+ +++g a+flp+d ++   ++  ++ ++                  +      id  +  + ++r+al+ +l +t+v+d+l++A+ 
  MMETSP0890-20130614|7160_1 388 RVLGRLLDVCKPsQRKYDKALAAAMGSLTEAIVVDSRSTAVQCVSILRDHRLGFASFLPADALRLGDEAQLARTDDilrtlghgyklakdlvvLNTLENENIDESNDREGAIRRALDLALEGTVVADDLKSARV 521
                 79***************************************************************999998887779***********99999444444455555566889*********************85 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.17
   PF06470.8  53 agratflpldrikqknssdskneverpggavplidlveypdeklrkalryl 103
                 ++ra    ld+i++++ +  +n +  +++++ l+d ++  d ++ kalr +
  MMETSP0890-20130614|7160_1 892 RRRARRAELDKIEARAQKLAPNMK-ASERCEALADELKAAD-AIGKALRDA 940
                 445555667777777766666643.6899999999999966.888888765 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.7e-11   1.2e-07     181     297 ..     865    1080 ..     819    1084 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.7e-11
   PF13304.1  181 lkrlldllikgiddleielsdlkkvlklsllidedllek....................................................................................................dviflkkgdggelplsdlSdGtkrll..alltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTH 297 
                  +   ++l+++g dd++++ ++++   k    ++  l++                                                                                                       ++    +++  ++++lS G++ l+  all a+ + ++  ++ll+DE++++L+ + l +l+ +  + +   +Q++++TH
  MMETSP0890-20130614|7160_1  865 NAAEAELFSRGNDDDDSDEEEEDALQKRRRARRAELDKIearaqklapnmkasercealadelkaadaigkalrdaarsaaaifedikqrrrtlfsscldsvasrlatlyaeltsssrhptggaaslapldadepylagLAFHATPPSKRFCDIHQLSGGERALAslALLFAIHDVHQA-PFLLLDEVDANLDASNLHQLAAFAASRTH--TQIVAVTH 1080
                  444444444444444444444444444444444444444555555555555555555555555555555555555566666666666666888888888888888888888888888888888888888888888888899999999999**************889999999999999.*********************99977777..******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1615  (0.118125); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.07u 0.35s 00:00:02.42 Elapsed: 00:00:01.10
# Mc/sec: 2535.78
//
Query:       MMETSP0890-20130614|7168_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-05   22.2   0.0    0.00014   21.7   0.0    1.3  1  PF13659.1 Methyltransferase domain
     0.0028   17.1   0.0       0.72    9.3   0.0    2.2  2  PF13847.1 Methyltransferase domain
     0.0076   16.7   0.0      0.013   16.0   0.0    1.4  1  PF12847.2 Methyltransferase domain
  ------ inclusion threshold ------
      0.057   14.1   0.0        0.1   13.3   0.0    1.4  1  PF13578.1 Methyltransferase domain
      0.096   12.2   0.0       0.14   11.7   0.0    1.3  1  PF13489.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.2e-08   0.00014       3      79 ..      26     128 ..      24     178 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.2e-08
   PF13659.1   3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl.........................aer.vrvrqgdlrdlaellra.gsfdlvvtnpP 79 
                  +l++gc  G   + ++ l  a +++g+El++++ a  +++l+r +l                         ++r +++r+gd+++++  l+a +++dlv+ +  
  MMETSP0890-20130614|7168_1  26 EILELGCADGFSVISFFFLTqAERVRGIELCAARFASSREALKRLALglrccaivadgsglirleftqfkhqSKRiLELRRGDFLEMP--LPAfRQADLVILDAT 128
                 69*********88888888779********************9999899999999*************9987333589********99..76659******9875 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0024       6.5       2      36 ..      22      55 ..      21      82 .. 0.74
   2 !    9.3   0.0   0.00026      0.72      56     112 ..     102     156 ..      88     221 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0024
   PF13847.1  2 ksgikvlDlGCGtGylllelaeelgpgak.vvGiDi 36
                +s +++l+lGC+ G+  + ++    ++a+ v Gi+ 
  MMETSP0890-20130614|7168_1 22 HSPKEILELGCADGFSVISFF--FLTQAErVRGIEL 55
                68899*********9998888..3344444777765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00026
   PF13847.1  56 veFiqgdieeleklle..esfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                 +e ++gd+ e++  l+  ++ Dlvi ++++    d+q  l+ +++ +  g+ + +++p+
  MMETSP0890-20130614|7168_1 102 LELRRGDFLEMP--LPafRQADLVILDATIPQARDHQ--LRILFQAVAVGTTIATRYPN 156
                 68899*******..677799**********9999997..88899999999999999988 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.6e-06     0.013       3      87 ..      25     135 ..      23     155 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.6e-06
   PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarena..........................ksldleeriellqgda.keelsllerfDavllkgltldallal 87 
                 k il+lGc  G + + +  l++  +v g+++ ++ ++  re++                           +++    +el++gd+ +  l +  + D+v+l+  t  ++ ++
  MMETSP0890-20130614|7168_1  25 KEILELGCADGFSVISFFFLTQAERVRGIELCAARFASSREALkrlalglrccaivadgsglirleftqFKHQSKRILELRRGDFlEMPLPAFRQADLVILDA-TIPQARDH 135
                 679********9999999999**********999999999888666666666666766666666666643344444455777888666666666699999988.44444444 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05       0.1       1     101 [.      28     150 ..      28     152 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-05
   PF13578.1   1 vEiGvysGvstlvllqalkrngagrlysvdpdpg....aeeaaalae..........................eagladrvrllkgdseea.lasladgsiDllfiDgghaaeavladleallprlapggvv 101
                 +E+G++ G+s + +  + +++   r+ +++ ++     +   +++++                          +++ +++++l +gd++e  l+ ++  + Dl+++D+    +a+ + l+ l++ +a g+++
  MMETSP0890-20130614|7168_1  28 LELGCADGFSVISFFFLTQAE---RVRGIELCAArfasS---REALKrlalglrccaivadgsglirleftqfKHQSKRILELRRGDFLEMpLPAFR--QADLVILDAT-IPQARDHQLRILFQAVAVGTTI 150
                 79*******999987544444...589999999543321...33333455666666666666666666555444999999********998688888..89******97.5778888899999999888877 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.14      12     119 ..      15     157 ..       5     201 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.1e-05
   PF13489.1  12 llerllarlkpggrvLDiGcGtG.illell.aengfdvtgvDpspaaigk.......................akqaqksqfdeedaaepag...................kfdlivarevlehvpdpeellrqiaellkpgGylllstpna 119
                 +l ++l  +  ++++L++Gc +G  + + +  ++  +v g+++  a                            ++ +++qf +++     +                   ++dl+++  ++   +d+   lr ++++++ g  +   +pn 
  MMETSP0890-20130614|7168_1  15 ALLEAL--EHSPKEILELGCADGfSVISFFfLTQAERVRGIELCAARFASsrealkrlalglrccaivadgsgLIRLEFTQFKHQS-----KrilelrrgdflemplpafrQADLVILDATIPQARDH--QLRILFQAVAVGTTIATRYPNP 157
                 333333..6999***********555554464444466677774433332555666688888888888887776666666664444.....0233334455666666666699999999999988886..7888888888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.54
# Mc/sec: 1211.49
//
Query:       MMETSP0890-20130614|7174_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   73.4   0.0    1.6e-20   73.1   0.0    1.1  1  PF04359.9 Protein of unknown function (DUF493)


Domain annotation for each model (and alignments):
>> PF04359.9  Protein of unknown function (DUF493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.2e-24   1.6e-20       2      85 .]      45     129 .]      44     129 .] 0.97

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 1.2e-24
   PF04359.9   2 ealieFPcdytfkvigkagedfveavvevverha.pevddakvevkesskgkYvSvtvtvtveseeqvdaiyqeLkkherVkmvl 85 
                 eal+e+Pcd++++vig+++++fv++++e + r+    vd+ ++++++sskg+++Sv+++  + s++ + ++y  L++++rVk+ l
  MMETSP0890-20130614|7174_1  45 EALVEYPCDFQIRVIGREDASFVNDMLEYIGRVTeTPVDEISFSTNPSSKGTFISVSIDAPIDSAQTLYECYAILRQDPRVKVAL 129
                 789*******************************8889********************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 562.05
//
Query:       MMETSP0890-20130614|7170_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-16   58.2   0.1    1.4e-15   57.4   0.0    1.4  1  PF13692.1 Glycosyl transferases group 1
    5.9e-05   23.1   0.0    0.00027   21.0   0.0    2.0  2  PF13524.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   2.1e-19   1.4e-15       3     134 ..     187     326 ..     185     327 .. 0.89

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 2.1e-19
   PF13692.1   3 lligssgsltndkdleelleealprlrekl...pdvelviiGkgpd.....elarllep.nveflgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeeegvgglvaddpeelaealvrlle 134
                 +++g+ +  +  ++++ l++e+lp+l++     p+++l+i+G+g +     ++ +  ++  v ++  v  l  +l++ ++++aplr+++g + K+  ++  G+Pv+a++ + eg+  +++++++vad + ++a  l +l+ 
  MMETSP0890-20130614|7170_1 187 FVVGNWALTSYLDAVSFLVKEILPKLANSAripPELTLYIVGNGEAprwiyDINKV-GDiSVVIHDSVKYLNTILQHVRIAVAPLRHDTGDKDKIHSAMLHGVPVIATSMAIEGMFLTHNKDVIVADGVLDFASRLLDLYV 326
                 6788887777899*************876545689********7554455337776.557*****************************************************************************9985 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.36   2.5e+03      10      48 ..      39      82 ..      32     103 .. 0.66
   2 !   21.0   0.0     4e-08   0.00027      12      90 ..     277     358 ..     265     360 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.36
   PF13524.1 10 spnl..rlfEaaacGtpvvtddt.....sgleelfepgkeivlfed 48
                s+nl   l+E+a + +p++ d +      +l+++ ++  e++ +++
  MMETSP0890-20130614|7170_1 39 SFNLwqNLLEIACFEIPLIFDTVglhflHELRKMMTI--EGIKYQN 82
                4554448999999999999996566666666666554..3555555 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 4e-08
   PF13524.1  12 nlrlfEaaacGtpvvtddtsgleel.fepgkeivlfedleelaeklryllanpeereaiaeaarervlaeh...tyehraeql 90 
                 + ++  a+ +G+pv+++ + ++e++ ++++k++++++ + ++a +l  l+ n++++ +i+++a  +++ ++   t +h++++l
  MMETSP0890-20130614|7170_1 277 KDKIHSAMLHGVPVIAT-SMAIEGMfLTHNKDVIVADGVLDFASRLLDLYVNDDLWIKIRRNALIQIKMRFsasTAKHVLKKL 358
                 5577789**********.67888875899999***99******************************9999666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.44s 00:00:01.40 Elapsed: 00:00:01.01
# Mc/sec: 1499.50
//
Query:       MMETSP0890-20130614|7172_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-20   72.2   0.1    7.6e-20   71.3   0.0    1.4  1  PF03009.12 Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> PF03009.12  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   5.5e-24   7.6e-20      13     247 ..       1     232 [.       1     238 [. 0.78

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 5.5e-24
                 HHHHHHHHH----EEEEEEEE-TTS-EEE-SSSBSTTTBSHHH...............BGGGS-HHHHHCCTE----EE-S--------B---BHHHHHHH..HS-TTTTEEEEE--CCCCHHHHHHHHTT-HCCCCCHCHHH------CCHCCCCS-HHHHHHCHHTCC--EECCHHHHHHHHH-E-EEE-SECCCCGGGGHCHHCCCHHH--B---HHHHHHTT-EEEEESB-TCS.....HHHHHHHCCGG--- CS
  PF03009.12  13 lesfrkAaeaGadyiEfDVqlTkDgvpVvyHDftldrttdvag...............dvkdltleelkrldiakenkaqlsgervrlefpfptLeevlkk..pqnvglnieikikqlpeakeeeelqivkeinksvdeilkklkkadkrkvifssfnpdilkrlrekqpklpllflteggteaeadssleraakfakkdallgevsavaeglgdpdlVkraksaglkvhvytvnned.....edemklllkagvdg 247
                 +++f +A+ +Gad+ E+D+q   Dg ++++HD +l rt + +                  + l l+++ + d++++ ++ +++er+      pt+++v +    +n ++ +e k++ +++  +    q+vk++   + ++               sf+ d l  ++++++  ++++++++++++e++   ++aak +   +l g   +++    +pdlVk ++ ++  v v+ +  ++     e+  k ++++gvd 
  MMETSP0890-20130614|7172_1   1 MAAFHMALNLGADGFECDIQELADGNLIILHDTNLWRTSGAQWywiffwplttirllrSAQKLRLKDVLNVDVGSWFDKRFAKERI------PTFAQVASLakEANSHCFAELKTPCTSNLVHSAV-QAVKNVPVNTITWI--------------SFDLDLLLQIKKLDS-QRKVLYIVQVQNSENA---MKAAKTCIDAGLDGLDLNAETYAVTPDLVKFLHDNNKLVAVWVYSAPAadndtEEMRKYMEDIGVDF 232
                 68***********************************999888*998888888887777777777777777777777666666666......9*****9985566666666666666666666655.55555555555554..............***************.6666666678888887...4667776666666666666666667*****************9999988888777777899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 1152.96
//
Query:       MMETSP0890-20130614|7167_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.5   1.9        2.3    8.1   0.0    3.2  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00017       2.3      27      39 .]       3      15 ..       1      15 [. 0.91
   2 ?    3.4   0.2    0.0051        70      23      39 .]      81      97 ..      32      97 .. 0.85
   3 ?   -1.4   0.0      0.16   2.2e+03      25      38 ..     141     154 ..     132     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00017
                EEEETTSEEEEEE CS
  PF00400.27 27 asgSrDgtirlWd 39
                +s + D+t+rlWd
  MMETSP0890-20130614|7167_1  3 LSTGNDRTLRLWD 15
                6899********9 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0051
                STEEEEEETTSEEEEEE CS
  PF00400.27 23 gpllasgSrDgtirlWd 39
                 + ++++   g++rlW+
  MMETSP0890-20130614|7167_1 81 ETQCITADTSGSLRLWS 97
                67899***********7 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.16
                 EEEEEETTSEEEEE CS
  PF00400.27  25 llasgSrDgtirlW 38 
                  l+ + +Dg + +W
  MMETSP0890-20130614|7167_1 141 ALLAATSDGQLEIW 154
                 57778889*99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 1221.75
//
Query:       MMETSP0890-20130614|7180_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-12   45.2   9.5    7.6e-12   45.2   6.6    2.3  2  PF07890.7 Rrp15p
     0.0079   15.2   0.3     0.0097   14.9   0.2    1.2  1  PF03576.9 Peptidase family S58
  ------ inclusion threshold ------
        1.8    8.5   4.7       0.75    9.7   0.9    2.0  2  PF06547.7 Protein of unknown function (DUF1117)


Domain annotation for each model (and alignments):
>> PF07890.7  Rrp15p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   6.6   1.7e-15   7.6e-12       1     120 [.      17     133 ..      17     186 .. 0.79
   2 ?   -2.3   2.8      0.81   3.7e+03     112     112 ..     165     165 ..     116     230 .. 0.57

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.7e-15
   PF07890.7   1 gfaeaiakilasktkaskkapiLsrskkllkakekkkseklekkakrqlkeekreaeeksrvkpvlvelqekErkLrkvAqrGVVkLFNAvrkaQkktekavkeaekkesvkekllkevs 120
                 g++  + kil++++ a    p+L ++k+     +   + +  k + ++ ++ek+ +   +   p  ++ +e+E++L+k+A+r VV LFNA++++Q +  +  ++  +++s+ke++ k+  
  MMETSP0890-20130614|7180_1  17 GMSVVMMKILKNDLGAVVD-PVLIKRKTPMM--RALDERERIKSETKRRRREKEARPTVALTSPLDEGKKENEKNLQKIATRAVVALFNAITQNQRNSGEVASTLTTSTSRKEHRKKSAH 133
                 56778999**999999888.79999999885..33333333333334555666666666666665559****************************999998888888888865555444 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.81
   PF07890.7 112 k 112
                 +
  MMETSP0890-20130614|7180_1 165 R 165
                 0 PP

>> PF03576.9  Peptidase family S58
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   2.1e-06    0.0097     234     296 ..      86     149 ..      11     163 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHTT----------------EEEEEESSSB-------B-S.--TT-HHHHHHHH-- CS
   PF03576.9 234 krqlkRlAkraalGlartgsvhsngsGDivlAfstaekvaeeaeketk.velledealdelfea 296
                 +++l+++A+ra + l  +++  +  sG+++  ++t ++++e+++k+++  ++l+ +++++  +a
  MMETSP0890-20130614|7180_1  86 EKNLQKIATRAVVALFNAITQNQRNSGEVASTLTTSTSRKEHRKKSAHqERVLAAREVQRATQA 149
                 689**************************98888887776666655443344444433333332 PP

>> PF06547.7  Protein of unknown function (DUF1117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.9   0.00017      0.75      50     108 ..      71     130 ..      55     145 .. 0.68
   2 ?   -0.9   0.1      0.32   1.5e+03      88     101 ..     197     210 ..     177     227 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00017
   PF06547.7  50 riswgsr.gsrsrersggalrRifRnllsllgrvrssrssssssssesgsrkresssrvs 108
                  ++++s   ++ +e+++   +   R +++l++  ++++ +s++ +s+ ++++ ++++r  
  MMETSP0890-20130614|7180_1  71 TVALTSPlDEGKKENEKNLQKIATRAVVALFNAITQNQRNSGEVASTLTTSTSRKEHRKK 130
                 5667665456666766665555689999***99999999999998876655554443332 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.32
   PF06547.7  88 sssssssesgsrkr 101
                 +ss sss+  + ++
  MMETSP0890-20130614|7180_1 197 HSSVSSSKKNKVRK 210
                 23333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1171  (0.0856495); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.57
# Mc/sec: 979.20
//
Query:       MMETSP0890-20130614|7176_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    7.4   8.6         12    6.0   0.1    2.3  2  PF07526.6 Associated with HOX


Domain annotation for each model (and alignments):
>> PF07526.6  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.6    0.0042        58      29      62 ..      24      57 ..       4      80 .. 0.45
   2 ?    6.0   0.1   0.00088        12      70     114 ..     240     281 ..     209     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0042
   PF07526.6 29 kssksakekeesskasaeaasskassksassssk 62
                k+ + +k k++++k+++e+++++a+ k+++++++
  MMETSP0890-20130614|7176_1 24 KKGTTKKAKSDTKKNKKETKKDQAKTKDSQDEAN 57
                2222222222222222222222333333333333 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00088
   PF07526.6  70 aerqelqkkkakLlslldevdrrYrqYldqmqmvvssFeavaGlg 114
                  + +e  k k+kL    ++  + Y+ Y   ++  v+ Fe+   lg
  MMETSP0890-20130614|7176_1 240 LQLHEFFKNKKKL---REQFAQVYNEYIGRLRFLVTQFEMMDQLG 281
                 4555666666665...5788899****************988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1526  (0.111615); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.66
# Mc/sec: 1296.21
//
Query:       MMETSP0890-20130614|7189_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.8   0.0       0.15   11.6   0.0    1.3  1  PF09864.4 Membrane-bound lysozyme-inhibitor of c-type lysozyme


Domain annotation for each model (and alignments):
>> PF09864.4  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.1e-05      0.15      39      62 ..      21      44 ..       4      51 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   PF09864.4 39 SGarYsdgnlefWtkgdeatlsle 62
                 G  Y++g ++f++k+++a+l  +
  MMETSP0890-20130614|7189_1 21 TGGQYQGGAITFHSKNQRALLKIN 44
                5889****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.89
# Mc/sec: 193.86
//
Query:       MMETSP0890-20130614|7187_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   17.0  62.5     0.0016   16.6  43.3    1.0  1  PF04615.8  Utp14 protein
  ------ inclusion threshold ------
       0.32   10.3  54.0       0.29   10.4  10.3    2.1  2  PF12685.2  SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> PF04615.8  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  43.3   2.3e-07    0.0016     312     554 ..      20     261 ..       9     266 .. 0.59

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.3e-07
   PF04615.8 312 rkgeeLrrKiegkseseededeesdeeeededdd.ekdaekenkealrkkleklkeaeddeeqsgllemkfmqraearkkeendeeeeelr.....eeleeeeesdeeeee.kkekknegrrkfgpee.sekeaeskkekkesksekkekkesdeeeekeeeeeekvekekekelkkkeekakkeeeeeeaeeenpwlkktkskkkskkkkkkkkkslvskldkaekkiskakvkvkkkkkkeksskkskk 554
                 + +e+L +K  g++++++d+++e+de+e++++dd e+d++++++e+l ++  + ++++++e   +  +++f q +++++ke +++e+e l+     e l e++e+d e +  + ++kn +++k+ +++ s ++a      +    + ++ + +d++++k++++ +k++++++   +  e+++++ +++ eaee+n++++ t + k+  k+  kkk   +s+++ka+ +++ka++ + +kkkke+++kk+k 
  MMETSP0890-20130614|7187_1  20 DDDENLGAKNSGEDDETDDDEYEEDEDEDEDEDDdEDDQDENDQEKLPAAPTSSEDGKKEEV--KEKAKPFEQLSKKERKELKQKELESLEellaaEGLTEKQEEDAEAAAaAVTEKNSEEKKTDQAAvSAAAAFL----AAAGVAPDNTAADDDKKNKKKKKPKKKTTSSA---TPGEKEETTTSTQGEAEETNQAKAPTRDIKDVVKNRLKKKGGESSTVSKAAVTEAKARADAIAKKKKEEEKKKKKL 261
                 6679999******9999999998888877777774666666666666666666444444444..666777888888888888888888888665764444444444444444455555555555553323333333....33333333334444444444444444444333...4455555555666677777777766666666666665555445577777777777777777666666666665554 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  22.1    0.0012       8.5      29     139 ..      22     141 ..      11     144 .. 0.70
   2 ?   10.4  10.3   4.2e-05      0.29       4     106 ..     144     256 ..     141     263 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0012
   PF12685.2  29 nkasvaaesseassaeeseaenkaasaedqa.e.eeaased......npgeavltssssekssseffaea.rlereqkrsknketLkeiinneniseeekkeAqdklleltekaekenai 139
                 +++  a++s e++++++ e e++++++ed++    +++++d      +p+++++ +++++k++ + f+++ + er +  +k+ e+L+e+++ e ++e++ ++A++   ++tek++ e+++
  MMETSP0890-20130614|7187_1  22 DENLGAKNSGEDDETDDDEYEEDEDEDEDEDdDeDDQDENDqeklpaAPTSSEDGKKEEVKEKAKPFEQLsKKERKELKQKELESLEELLAAEGLTEKQEEDAEAAAAAVTEKNSEEKKT 141
                 444444444444443333333333333333322122222225567779999999999999999999999659*******************************************99987 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.2e-05
   PF12685.2   4 iiitlLalmivlagy..lnyalnkdkdnkasvaaesseassaeeseaenkaasaedqa.e.eeaased......npgeavltssssekssseffaearlereqkrsknketLk 106
                   + + a+++++ag+   n+a ++dk+nk+++++++++ ssa++ e+e+ ++s++++a e ++a++ +       ++  +++ ++s++ s++ ++ea+   + +  k+ke+ k
  MMETSP0890-20130614|7187_1 144 AAVSAAAAFLAAAGVapDNTAADDDKKNKKKKKPKKKTTSSATPGEKEETTTSTQGEAeEtNQAKAPTrdikdvVKNRLKKKGGESSTVSKAAVTEAKARADAIAKKKKEEEK 256
                 56778899999999955599***************************999999999986655444444778888666666666666666677888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2731  (0.199751); expected 273.4 (0.02)
Passed bias filter:                      693  (0.0506875); expected 273.4 (0.02)
Passed Vit filter:                       187  (0.0136776); expected 13.7 (0.001)
Passed Fwd filter:                        93  (0.00680222); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.86u 0.42s 00:00:03.28 Elapsed: 00:00:01.89
# Mc/sec: 339.80
//
Query:       MMETSP0890-20130614|7185_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 361.56
//
Query:       MMETSP0890-20130614|7192_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-40  137.2   8.5    7.6e-40  136.7   5.9    1.1  1  PF00150.13 Cellulase (glycosyl hydrolase family 5)
     0.0048   15.9   0.1       0.01   14.8   0.1    1.5  1  PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
  ------ inclusion threshold ------
      0.051   13.1   0.1      0.089   12.3   0.1    1.3  1  PF04686.7  Streptomyces sporulation and cell division protein, SsgA


Domain annotation for each model (and alignments):
>> PF00150.13  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   5.9   1.7e-43   7.6e-40      17     279 ..     107     367 ..      89     369 .. 0.83

  Alignments for each domain:
  == domain 1    score: 136.7 bits;  conditional E-value: 1.7e-43
                 -SSGCSHHHHHHHHHHH--SEEEEEEEHGGGG-STTTTC--HHHHHHHHHHHHHHHTTT-EEEEEEEESSSSG.-S-CCCTHHHHHHHHHHHHHHHHHHCTT-TT.BEEEESSSS--TSS-TTBT-CCTTTBHHHHHHHHHHHHHCT-TT..SEEEEE-HHHHC-HCHHHCC.....SGCSSTTTEEEEEE---CCHHHTCCG-....CCHHHHCCHHHHHHHHHHHTTTTTSEEEEEEE--B-TT-HCHHHHHHHH....HHHHHTCT-EEEESESSS CS
  PF00150.13  17 wgnpyttkalidevkdagfntvRlpvswgelvennpdykvdenslerveevvkyakenglyvildiHseegwltkadgnssedtaeeffkklwtqiAerykknde.vvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn..rliivegnswsgnldgavln.....dPndsqdnliysvHfYgpsdfaqtefg....kdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekw....ldylkekgiswiyWslnp 279
                 w +  +t+a++d++k+a+f  vR+p+ w+++++ ++ yk+d++ +++ve+vv + +e++l +i++ H+e +wl +a   ++ d     f ++w+q+A+++++ ++ +++fe++NEPh ++           +++ ++ +a+ +IR++ +n  r+++++g ++++  +    n      P++ +d +++++H+Y+p+ +a+++      + + +  ++ +++ ++ + +v   ip+  gEfG ++ ++   +  +  w      +++++g+  ++W+ n+
  MMETSP0890-20130614|7192_1 107 WQK-MPTAAVFDAYKAANFSNVRIPCRWDYHTNHSEPYKIDADFMDQVEQVVLWTIERDLIAIVNTHHE-KWLDEA--DENFDVLLPRFLAIWQQVATKFANISTnYLAFEIFNEPHYMTI---------HQLNTLNRQALSIIRNISGNenRIVFLGGLQYNNPSYL-IHNfsslwLPDE-DDYIMIEIHNYDPYGYAGKKPPsqyfWGTSNDISTLWTWFQNVSHVVG-SIPIYYGEFGCTHYQN--ISSGRHDWyeqhRLAINSYGVAASVWDDNA 367
                 654.49**************************************************************5.9*5555..56666667889999********9976659***********643.........799**************99999*******999996666.333467789*77.9***************99988888664444444455566666666665.48**********9999..7777777756657788**********9776 PP

>> PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.3e-06      0.01       6      34 ..      40      68 ..      36      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
                HHHHHHHHH-----HHHH-----HHHHHH CS
   PF10589.4  6 fameFcaaESCGkCtPCRiGttrlvelld 34
                f + +c ++SC +C P  +G +rl+e++ 
  MMETSP0890-20130614|7192_1 40 FCAYYCSEQSCDQCHPNDVGYARLAEAVY 68
                667899*******************9975 PP

>> PF04686.7  Streptomyces sporulation and cell division protein, SsgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     2e-05     0.089       2      38 ..     129     167 ..     128     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2e-05
   PF04686.7   2 vpaelrYdpa..dPlavtltfregedeeveWvfaRdlLa 38 
                 +p + +Y+++  +P+++ + f ++ ++ v W+++Rdl+a
  MMETSP0890-20130614|7192_1 129 IPCRWDYHTNhsEPYKIDADFMDQVEQVVLWTIERDLIA 167
                 6666777765459********99999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.93
# Mc/sec: 1030.69
//
Query:       MMETSP0890-20130614|7196_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   16.1   0.1     0.0061   15.4   0.1    1.2  1  PF04501.7 Baculovirus major capsid protein VP39


Domain annotation for each model (and alignments):
>> PF04501.7  Baculovirus major capsid protein VP39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   4.5e-07    0.0061     220     281 ..      71     135 ..      65     142 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.5e-07
   PF04501.7 220 lklrnaatcaidekGLvadv....elYNpvkpkyrikanenvlqienvlkfkGnaralqkkLsrye 281
                 + l n+atc++++  L+ad+    +l  +  p+y    +e+ l+i ++++f+ +a+++q++L+ y+
  MMETSP0890-20130614|7196_1  71 ICLANMATCQLKNLDLLADAadnaNLARIYCPEYLK-GHEKLLHILELTNFTEEAKNIQHQLQCYQ 135
                 6799**************988888888889999988.9************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1052.31
//
Query:       MMETSP0890-20130614|7195_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       798  (0.0583675); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.78
# Mc/sec: 1794.20
//
Query:       MMETSP0890-20130614|7200_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-53  179.2   0.0    5.1e-53  179.1   0.0    1.0  1  PF01931.13 Protein of unknown function DUF84


Domain annotation for each model (and alignments):
>> PF01931.13  Protein of unknown function DUF84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.0   3.7e-57   5.1e-53       1     167 [.       9     177 ..       9     178 .. 0.96

  Alignments for each domain:
  == domain 1    score: 179.1 bits;  conditional E-value: 3.7e-57
                 S---HHHHHHHHHHHHHHSTTS-EEEEEEE---SS-SS--SHHHHH---HHHHHHHHHHSTTSSEEEEEE---B....TTEE.--EEEEEESS..----EE---EE--HHHHHHHCTT-----HHHHH---CCHHH-------TTTTSS-HHHHHHHHHHHHTHHHH-CC CS
  PF01931.13   1 gstNpaKieaveeafekvfgekevevegvevesgvsdqPlsaeetvkGAlnRvkealekvpeadygvglEaGiekieeekld.fawmvveeke..krgvgrsaslelpkkvlekilegkelgevmdeltgeknikqkeGaigvltagkltResvyeqalilALipflnee 167
                 +s+Np+Kie+++ +fe+vf+++++e++g++v+sgvsdqP+++eet+ GAlnR+++ ++  p+ad+++g+E+G+  ++ ++ld faw+v+ +k    +g g++as+ lp+k++e ++ g+elg+  d +++ +n kq +Ga+g+lt++ ++R + y++a+i+ALipf+n++
  MMETSP0890-20130614|7200_1   9 ASKNPVKIESAKLGFEDVFKDDSIEISGISVSSGVSDQPMTDEETYLGALNRAEATRRAEPKADFWIGIEGGVA-MRAKSLDcFAWIVILSKDsdLQGAGKTASFALPPKIAELVQGGMELGHADDLVFQRTNSKQSNGAVGLLTHDLIDRIQYYRHAVIMALIPFINKQ 177
                 79************************************************************************.6666666269****99887789**********************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:00.81
# Mc/sec: 529.57
//
Query:       MMETSP0890-20130614|7201_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-27   95.6   0.1    4.1e-19   68.7   0.0    2.5  2  PF01000.21 RNA polymerase Rpb3/RpoA insert domain
    6.4e-13   47.8   0.0      1e-12   47.1   0.0    1.3  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain
    0.00028   20.1   0.1        1.1    8.6   0.0    3.3  3  PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> PF01000.21  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   4.9e-09   2.2e-05       1      25 [.      35      59 ..      35      64 .. 0.92
   2 !   68.7   0.0   8.9e-23   4.1e-19      22     111 .]      78     188 ..      73     188 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4.9e-09
                EEEEEETSSS-HHHHHHHCCCS-B- CS
  PF01000.21  1 VeieentsvlqDEvvaHrlgliplv 25
                V +een+svl+DE++aHrlglipl+
  MMETSP0890-20130614|7201_1 35 VTFEENSSVLNDEIIAHRLGLIPLK 59
                7899*******************97 PP

  == domain 2    score: 68.7 bits;  conditional E-value: 8.9e-23
                 S-B-HCCHCCHCCCCCTTETSSSSTTTTEEEEEEEEB-SCS......EEGGGEEESSTTCEES.................SSSSEEEEE----BEEEEEEEE---TTCSTTT- CS
  PF01000.21  22 iplvsedvleillnlkelieeeegeeeksvelkLnvkgpge......vtagdlkledadveiv.................npdilIakLrkgqeleleakvkkGiGkehakfs 111
                  p+   d++  + +++++ ++++++  +sve+kL+++ pge      vt++dl + d+dv++v                 +++i I+kL kgq+++l++ +k GiGkehak++
  MMETSP0890-20130614|7201_1  78 YPID-TDIRRRFRFTRDC-DCDTHCAWCSVEFKLDISHPGEdednitVTTNDLISGDPDVQPVnfstnfekeiaksnnfkDKGITIVKLGKGQKIKLSCLAKLGIGKEHAKWT 188
                 5555.4556669******.9********************************************************************************************5 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.2e-16     1e-12       2      82 .]       5     323 ..       4     323 .. 0.90

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 2.2e-16
                 EEEEES--HHHHHHHHHHHCTT-TTEEEEE......................................................................................................................................................................................................................-B..S.--EEEEEE..................--S-........EEEEEEEEEEE-----HHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................................................................................................................................................................................xxxxxxxxxxxxxx..................xxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF01193.19   2 gpflegqgitlaNaLRrtLlselpglaita......................................................................................................................................................................................................................pvtkvnylieedek..................kkkp........dkekiileietngsitpkealkkAakilidlll 82 
                 +++l++ + ++aNaLRr+++se+ ++ai+                                                                                                                                                                                                                        +++ +y++ ++e                                + ++i+++e  gs+++ e++  A+ +++++++
  MMETSP0890-20130614|7201_1   5 QFELRNSDTSVANALRRVMISEVVTMAIDLvtfeenssvlndeiiahrlgliplkysyrpgetsllegndlkiypidtdirrrfrftrdcdcdthcawcsvefkldishpgedednitvttndlisgdpdvqpvnfstnfekeiaksnnfkdkgitivklgkgqkiklsclaklgigkehakwtpvarsvfrpqpiinfdhqaisalhqrqrlkiiqcapkgvlgflsdedyipppdspgthlsRIEQQKYIVVKNEAaildyiedvtiltralssT--GkplihatvSETNFIFDVEAVGSMPVDEIILCAIYAIKSKCE 323
                 6999********************************************************************************************************************************9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888555556666666666666665565555555551..044566666999**************************9995 PP

>> PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00023       1.1       1      25 [.       2      26 ..       2      33 .. 0.86
   2 !    3.4   0.0    0.0097        44      34      51 ..     110     127 ..     104     139 .. 0.87
   3 !    4.0   0.0    0.0064        29      40      76 ..     292     328 ..     284     329 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00023
                TEEEEEEES--HHHHHHHHHHHTT- CS
   PF13656.1  1 nelefeiegeDhTlgnlLreeLlkd 25
                ne++fe+++ D ++ n+Lr + +++
  MMETSP0890-20130614|7201_1  2 NEAQFELRNSDTSVANALRRVMISE 26
                79*****************998764 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0097
                 ESSSTTTSS-EEEEEE-- CS
   PF13656.1  34 svpHpleskivlriqtks 51 
                 ++ Hp e++ +++++t++
  MMETSP0890-20130614|7201_1 110 DISHPGEDEDNITVTTND 127
                 789*************95 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0064
                 TSS-EEEEEE---.-HHHHHHHHHHHHHHHHHH---H CS
   PF13656.1  40 eskivlriqtksgtdpeevlkealedlikvceelkke 76 
                 e++  + +   +++++ e++  a+  +++ ceelk e
  MMETSP0890-20130614|7201_1 292 ETNFIFDVEAVGSMPVDEIILCAIYAIKSKCEELKGE 328
                 78999999999999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:01.28
# Mc/sec: 630.92
//
Query:       MMETSP0890-20130614|7197_1  [L=1423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-25   88.4   0.0      1e-24   86.9   0.0    1.7  1  PF02181.18 Formin Homology 2 Domain
    2.4e-20   73.2   8.5    1.2e-10   41.7   0.0    3.8  5  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
     0.0032   16.7   0.0     0.0081   15.4   0.0    1.7  1  PF06371.8  Diaphanous GTPase-binding Domain
  ------ inclusion threshold ------
      0.051   12.5   0.1      0.083   11.8   0.1    1.2  1  PF05145.7  Putative ammonia monooxygenase
      0.064   13.0   0.2       0.47   10.2   0.0    2.3  2  PF08593.5  Meiotically up-regulated glycoproteins C-terminal


Domain annotation for each model (and alignments):
>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   3.8e-28     1e-24       5     371 .]     837    1274 ..     834    1274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 3.8e-28
                  ---SS-B--------SSGGCSSSHHHHTTCHHHHC...........TSHHHHHHHHTBSC--HCCH--..........................---HCCCCTTCCESSS-HHHHHHHHHHCHHHTS-HHHHHHHHHTTTTCCCT....HHHHHHHHHHCGGHHHHHHHH..........TTCCC......GTTB-HHHHHHHCCCT.CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---TTT-CCTTG------GGGGGGCCCSB-STTTSB....HHHHHHHHHHT.....TSGGGGGHH.HHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHCHHT..........TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TT.CCHHHHHHHHHHHHHHHHH CS
  PF02181.18    5 ekpkkklkplhWdkvnaaqdrgtvWdkleeesfek...........dldldeleelFsakakkksskk..........................ekkkkkkkkkkkikvLdpkrsqnvaIllrklklpaeeivqaileldeevls....lellenLlkmlPtkeeleklk..........eykgd......eskLseaeqFllelvk.iprleeRleallfksefeeeveelkrkletleaaseeLreseklkklLeliLalGNymNggtrrgqAkGFkLdsLlkLsdvKstdnktt....LLhfvvkivee.....klpevldls.selsnvekaakvdleelekdvkklekglkklekeleksee..........keeesdkfvekleefleeaeeklkkleeelkeakelfkelteYfgedpk.evspeeffkilreFlnefk 371 
                   +p +kl++++Wd v +  ++  vW+++ ++++++           +  ldele +F ++a k+  +k                            +   k+++   k L +kr+ +++ l  +l+++++e v+ i +ld+++ +    l  l +L++m+  ke+l+ ++          e +++      +sk +  ++ +  l++   r +++++al   ++ ++  +el + ++ +e++++ + +s+ ++klL+++L + N+ N g+  g+  G ++++L+kL  +++t + +     LL fvvk         k     d++ + l+n  +      e +++ +++l+++ +++  e    ++          +          + +++ + + +l+ l + ++++ ++++ +++Yfge +   ++    ++ l++F++ ++
  MMETSP0890-20130614|7197_1  837 RAPRQKLRKVFWDVVIDPAGT--VWESILTSPEYSstepgseypltETALDELELVFGIAARKTDVSKadrsaeaasqqmrkfesamtqaaagaPAENNGKSQSIVAKALGEKRAFALNLLYGSLRISNDECVATIAALDPTNTEfvekLPRLGTLYNMISRKEDLNIIEhalidagifdETTKSlvsgadTSKFDGLSRLMIGLLErARRPRAKVQALWLYATVKDRAAELFSAMKNYEKVTDAILSSNAFRKLLSVVLSITNFVNCGSDLGNNAGVRISALNKLHTTRTTTSDIGnmknLLQFVVKHSGVtssqlK----HDIPlELLRNMHS--GSPREVIHSGIDQLRSERDDAVAERGVLSReataqgvdarRVAVAAAAAARMAHIVADVDDELAGLDAAFSKMDNTVDAMLRYFGEPNAaSCDVANWLRSLETFITHYD 1274
                  57999**********999995..********99999************************999988889**********************977555555555666789********************************6666666666777899************556788888874444466666788889999********999********************************************************************************9976543222288888887544444442....3333333333333..3344455555555555555544332222222234444778888899999***********************************7755569*************99885 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.4         5   1.4e+04      68      90 ..      55      75 ..      36      90 .. 0.45
   2 !   34.5   0.0     7e-12   1.9e-08     104     147 ..     673     716 ..     625     717 .. 0.83
   3 !   41.7   0.0   4.3e-14   1.2e-10     100     147 ..     736     783 ..     718     784 .. 0.84
   4 ?   -2.4   0.1       1.7   4.7e+03      48      68 ..     904     923 ..     862     955 .. 0.52
   5 ?   -0.8   0.0      0.55   1.5e+03      71      97 ..    1307    1333 ..    1233    1349 .. 0.65

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 5
   PF10152.4 68 rsggpppppgaraeaaaqeaeaa 90
                + ++ + p g  ++++++++++ 
  MMETSP0890-20130614|7197_1 55 KTKNFNGPTG--VAPPPPPVKSM 75
                2222333333..33333333332 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 7e-12
   PF10152.4 104 aegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpelld 147
                 +  +   ++dpr+  Y++m+kl Vp  a+ +Km ++Gldp++ld
  MMETSP0890-20130614|7197_1 673 RLFGPPLKDDPRFTSYIRMIKLHVPRIAIEAKMVQDGLDPSILD 716
                 555566789**********************************9 PP

  == domain 3    score: 41.7 bits;  conditional E-value: 4.3e-14
   PF10152.4 100 pealaegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpelld 147
                   +la + +t ++d  yakYfkml l Vp  a+ +Km+aeGldp++ld
  MMETSP0890-20130614|7197_1 736 TASLASDVTTLENDVTYAKYFKMLRLHVPRGAIVQKMEAEGLDPSVLD 783
                 556677888999***********************************9 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 1.7
   PF10152.4  48 dgleeledqdelpappaaarr 68 
                 d  +e ++q + ++ ++a+++
  MMETSP0890-20130614|7197_1 904 DRSAEAASQ-QMRKFESAMTQ 923
                 222222221.11111111111 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 0.55
   PF10152.4   71 gpppppgaraeaaaqeaeaaraetpae 97  
                  ++p +p++++++++++++ +r  +p+ 
  MMETSP0890-20130614|7197_1 1307 DEPSSPKNHSQPSSPKTNINRNGAPSS 1333
                  222222235555555554444444443 PP

>> PF06371.8  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06    0.0081     113     187 ..     235     315 ..     167     316 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3e-06
   PF06371.8 113 LlniLskinekkses..eedlkreyeiikClKalmNnkfGldavLahke....vikllaqsldserlktrklvlelLtalc 187
                 L+  L+ i +k++++    d+ r + +++C +al+N   Gl+avLa ++       lla +l+ + +   +lvle+L+al 
  MMETSP0890-20130614|7197_1 235 LTRTLELIRRKERHQfvLSDAMRGLWVARCVRALLNLPGGLAAVLAMPQergsLRRLLAAALLCRVPILTTLVLEMLAALL 315
                 7888999999999988889999************************554222145799********************995 PP

>> PF05145.7  Putative ammonia monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     3e-05     0.083      91     130 ..     271     310 ..     264     339 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3e-05
   PF05145.7  91 mPGgasamvvlaqdkgadlaiValvqtlRvlfvvllipli 130
                  PGg++a++++ q+ g+  ++ a++  +Rv +++ l++ +
  MMETSP0890-20130614|7197_1 271 LPGGLAAVLAMPQERGSLRRLLAAALLCRVPILTTLVLEM 310
                 7*****************************9888777532 PP

>> PF08593.5  Meiotically up-regulated glycoproteins C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00017      0.47      37      60 ..     496     519 ..     487     531 .. 0.83
   2 ?   -0.9   0.0      0.51   1.4e+03      48      74 ..    1264    1289 ..    1252    1306 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
   PF08593.5  37 pigsiqdidiLskeqlsrylqGyg 60 
                 + ++++di++L + ql ++l+G++
  MMETSP0890-20130614|7197_1 496 EDKEVEDINQLFRIQLENFLDGWD 519
                 5689******************86 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.51
   PF08593.5   48 skeqlsrylqGygveyepn.eslflklr 74  
                      l +++  y+ ey +  e++ ++++
  MMETSP0890-20130614|7197_1 1264 R--SLETFITHYDAEYIEYrEQVTRREK 1289
                  4..68899999**998664499999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.93u 0.37s 00:00:02.29 Elapsed: 00:00:01.40
# Mc/sec: 2435.73
//
Query:       MMETSP0890-20130614|7202_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   30.0   0.0    2.5e-07   29.4   0.0    1.3  1  PF00852.14 Glycosyltransferase family 10 (fucosyltransferase)
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.19   11.5   0.0    1.2  1  PF03072.9  MG032/MG096/MG288 family 1


Domain annotation for each model (and alignments):
>> PF00852.14  Glycosyltransferase family 10 (fucosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.7e-11   2.5e-07     216     288 ..     181     250 ..     150     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.7e-11
  PF00852.14 216 kaleeeellktlaqykFyLafENslckDYiTEKlwknalaagaVPVvlGpsranyerfvPsdsfIhvddFssp 288
                 ++  e++ ++ +a +++++a E    + Y TEKl    l + +VP+++G   +n+++f+  d  Ih++d  ++
  MMETSP0890-20130614|7202_1 181 DTAIEAKAIEAIAPFRYHIAVECVSETSYFTEKLI-DCLLLRTVPIYWG--CPNLKDFFNLDGIIHINDIIDA 250
                 445567899**************************.99999********..*****************97665 PP

>> PF03072.9  MG032/MG096/MG288 family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.19      37     128 ..     179     270 ..     150     274 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.8e-05
   PF03072.9  37 kwnkekggiekkktkpykfkfevklkyegsyklkwwtallaklggiPgeWkG.elkvkfvvdGdvpswivqkkdypgslfqfkdedkLlFtlh 128
                  + +++++ + +   p+++++ v+   e sy  + +  +l  l  +P +W   +lk  f++dG ++ + + + +   +   f++ + +lF l 
  MMETSP0890-20130614|7202_1 179 MLDTAIEAKAIEAIAPFRYHIAVECVSETSYFTEKLIDCL-LLRTVPIYWGCpNLKDFFNLDGIIHINDIIDAQNIDTTSLFNQANAILFALE 270
                 344555566777889***********99999887776666.5999*****65478888********98887777777888899999****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 1013.32
//
Query:       MMETSP0890-20130614|7206_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00099   18.4   1.0        1.6    8.1   0.5    3.8  2  PF09811.4  Essential protein Yae1, N terminal
  ------ inclusion threshold ------
      0.013   14.8  19.4       0.12   11.8   8.7    2.7  2  PF13441.1  YMGG-like Gly-zipper
       0.04   13.4  13.9       0.17   11.4   6.6    2.1  2  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
       0.17   10.8   1.0       0.19   10.6   0.7    1.0  1  PF05150.7  Legionella pneumophila major outer membrane protein precursor
       0.31   10.6  24.7       0.24   10.9  10.6    2.5  2  PF13488.1  Glycine zipper
       0.43   10.6  18.8        2.3    8.3   1.1    3.5  2  PF10247.4  Reactive mitochondrial oxygen species modulator 1
       0.91    9.1  18.3        1.5    8.4   7.0    3.1  3  PF05433.10 Glycine zipper 2TM domain
       0.92    9.5  20.5        7.2    6.6   3.9    2.5  2  PF10439.4  Bacteriocin class II with double-glycine leader peptide


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11     2e+02      24      36 ..       3      15 ..       1      18 [. 0.62
   2 !    8.1   0.5   0.00096       1.6      12      35 ..      51      74 ..      12      77 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.11
   PF09811.4 24 eGaqlGlelGele 36
                 G+ +Gl +G+  
  MMETSP0890-20130614|7206_1  3 VGSLVGLIVGCED 15
                5666677777665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00096
   PF09811.4 12 eglqeGfdeGfqeGaqlGlelGel 35
                 g +eG   G++ G+ +Gl +G+ 
  MMETSP0890-20130614|7206_1 51 DGIEEGIVVGLPVGSLVGLIVGCE 74
                455555555666666666666655 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   8.7   6.8e-05      0.12      14      43 ..       4      44 ..       3      52 .. 0.75
   2 ?    6.5   0.4     0.003       5.2       6      25 ..      56      77 ..      55      80 .] 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.8e-05
                XXXXXXXXX...XXX--........-------------TTH CS
   PF13441.1 14 GAaiGaaaG...gggkG........AaiGAaaGalaGgaag 43
                G ++G ++G   gg+ G          +GAa+G ++G a+g
  MMETSP0890-20130614|7206_1  4 GSLVGLIVGcedGGSVGvevgsdvgNTVGAAVGIVVGSAVG 44
                77777777777434444555555559************998 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.003
                XXXXXXXXXXXXXXXXX..XXX CS
   PF13441.1  6 GAaiGAaaGAaiGaaaG..ggg 25
                G  +G  +G ++G ++G  +gg
  MMETSP0890-20130614|7206_1 56 GIVVGLPVGSLVGLIVGceDGG 77
                556788899999*999988554 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.6   9.9e-05      0.17      53      93 ..       6      45 ..       3      53 .. 0.84
   2 ?    4.3   0.2     0.016        27      54      74 ..      55      74 ..      50      80 .] 0.64

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.9e-05
   PF13436.1 53 aegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGa 93
                ++g +vG   G+ +g  +g+ + g  +GAa+G +vG+a+G 
  MMETSP0890-20130614|7206_1  6 LVGLIVGCEDGGSVGVEVGS-DVGNTVGAAVGIVVGSAVGI 45
                45677777778899999999.******************96 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.016
   PF13436.1 54 egaavGaavGAaagaaaggag 74
                eg +vG  vG ++g ++g  +
  MMETSP0890-20130614|7206_1 55 EGIVVGLPVGSLVGLIVGC-E 74
                4667777777777777776.3 PP

>> PF05150.7  Legionella pneumophila major outer membrane protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00011      0.19     178     228 ..      19      69 ..      14      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
   PF05150.7 178 fgprtgldmnyvfgngfgvyaksavailvgtsdfvdnctvinfitgsknai 228
                 +g   g d+   +g  +g+   sav i vg +d +++  v+++ +gs   +
  MMETSP0890-20130614|7206_1  19 VGVEVGSDVGNTVGAAVGIVVGSAVGIPVGCADGIEEGIVVGLPVGSLVGL 69 
                 57788999999********************************99997654 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  10.6   0.00014      0.24       6      39 ..       4      44 ..       3      48 .. 0.74
   2 ?    9.6  11.8   0.00037      0.62       1      39 [.      27      72 ..      27      80 .] 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   PF13488.1  6 GAaaGAaiG....aaag...gagkGAliGAavGaaaGaliG 39
                G ++G ++G    + +g   g+++G  +GAavG ++G+++G
  MMETSP0890-20130614|7206_1  4 GSLVGLIVGcedgGSVGvevGSDVGNTVGAAVGIVVGSAVG 44
                55555555533325666777789****************99 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00037
   PF13488.1  1 iGaaiGAaaGAaiGaaag.......gagkGAliGAavGaaaGaliG 39
                +G ++GAa+G ++G+a+g       g  +G ++G  vG ++G ++G
  MMETSP0890-20130614|7206_1 27 VGNTVGAAVGIVVGSAVGipvgcadGIEEGIVVGLPVGSLVGLIVG 72
                5788999999999999997774443335666666666666666665 PP

>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   8.3      0.38   6.5e+02       9      28 ..      23      42 ..       1      57 [. 0.71
   2 ?    8.3   1.1    0.0013       2.3       3      26 ..      49      72 ..      48      77 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.38
   PF10247.4  9 mGfimGaaVGgafGllfGgy 28
                +G  +G +VG+a+G+++G  
  MMETSP0890-20130614|7206_1 23 VGSDVGNTVGAAVGIVVGSA 42
                45555555666666655543 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0013
   PF10247.4  3 cfdkvkmGfimGaaVGgafGllfG 26
                c d +  G+++G  VG  +Gl++G
  MMETSP0890-20130614|7206_1 49 CADGIEEGIVVGLPVGSLVGLIVG 72
                556677777777777777777776 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.2   3.4e+02      29      39 ..       3      13 ..       2      14 .. 0.65
   2 ?    8.4   7.0   0.00088       1.5       6      38 ..      16      44 ..      16      52 .. 0.63
   3 ?    3.8   0.3     0.023        40      22      39 ..      56      73 ..      50      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.2
  PF05433.10 29 vGAaaGalaGn 39
                vG ++G ++G+
  MMETSP0890-20130614|7206_1  3 VGSLVGLIVGC 13
                66677777776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00088
  PF05433.10  6 GAaaGavaGaaigggggrllgavvGAaaGalaG 38
                G+ +G  +G+ +g+    ++ga+vG ++G ++G
  MMETSP0890-20130614|7206_1 16 GGSVGVEVGSDVGN----TVGAAVGIVVGSAVG 44
                45555556666666....666666666666666 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.023
  PF05433.10 22 grllgavvGAaaGalaGn 39
                g ++g  vG ++G ++G+
  MMETSP0890-20130614|7206_1 56 GIVVGLPVGSLVGLIVGC 73
                667889999999999998 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.1    0.0067        12      27      62 ..       7      42 ..       3      45 .. 0.81
   2 ?    6.6   3.9    0.0042       7.2      28      61 ..      44      77 ..      40      80 .] 0.72

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0067
   PF10439.4 27 agigggaaaGalaGaatggavGglaGAlvGavvGai 62
                 g++ g+  G+ +G  +g+ vG+ +GA+vG+vvG  
  MMETSP0890-20130614|7206_1  7 VGLIVGCEDGGSVGVEVGSDVGNTVGAAVGIVVGSA 42
                567778888999999999999999999999999965 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0042
   PF10439.4 28 gigggaaaGalaGaatggavGglaGAlvGavvGa 61
                gi  g+a G+  G+++g +vG l+G +vG+  G+
  MMETSP0890-20130614|7206_1 44 GIPVGCADGIEEGIVVGLPVGSLVGLIVGCEDGG 77
                6667888888888888877888888888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 304.30
//
Query:       MMETSP0890-20130614|7203_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.86
# Mc/sec: 248.00
//
Query:       MMETSP0890-20130614|7212_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 572.26
//
Query:       MMETSP0890-20130614|7205_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.2e-209  694.6   0.5   7.3e-209  694.3   0.3    1.0  1  PF00920.16 Dehydratase family
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.027   14.1   0.1    1.3  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
      0.061   13.1   0.0        8.8    6.2   0.0    2.8  2  PF04023.9  FeoA domain


Domain annotation for each model (and alignments):
>> PF00920.16  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  694.3   0.3  1.6e-212  7.3e-209       1     521 []      62     594 ..      62     594 .. 0.97

  Alignments for each domain:
  == domain 1    score: 694.3 bits;  conditional E-value: 1.6e-212
  PF00920.16   1 kpiigivnsysellpchvhlkelaeavkegvreaGgvpvefntiavsDgiaqgtegmeysllsReliadsievvvrahplDalvllggCDKtvPgllmaaarlniPaivvsgGpmlsgkl..kgkkvdlsdvfeavgalaageiseeelkelekaacpsaGaCagmgTAntmavlaealGlalpgsasipavsserkelake.agrrivelvkedlkprdiltkkafeNAivvllAlGGStNavlHllAiAreagveltlddfdeisrkvPllaklkPsGkylvedleaaGGvpavlkeLleaglLhedvltvtgktlaenlkeae...aeeedak.........virplsnplkkegglavlkGnLapegaviKlsavkeellkfegpAvvfeseeeaieaikdgelekgdvvviryeGPkGgpGmpemlkltaalagkglgkkvalitDGRfSGaskglvighvsPEAaagGpialvrdgDiieiDie..nrelnlevseeelaeRraelkppekkkkrgllakyaklvssaeeGa 521
                 k ++gi++ + e +pc++hl el+++vk+gv++aG v+++fnti+vsDgi++gt+gm ysl sR++iads+e++++a+ +Dal++++gCDK++Pg++m++ rl++Pa++++gG++++g+l  +++k+d+ ++f+++g++a g+i++ee +++ ++acp+ GaC+gm+TAntma+++ealG++lp+s+s pa s e+ + +k+ ag++i  l+++++kp+di+tk+afeNAi++++A+GGStNavlHl+A+Ar+++v++tlddf++is+kvP+la+lkPsG+y +ed++++GG+pa++k Ll++g+Lh+d+lt+tg t+aenlk+++   + +   +         vi+pl++p+k++g+l++++GnL+p gav+K++++  e  +f+g+A+v++seee+ +a++d+++++g+vv+iryeGPkGgpG+peml++t+a++g+glg+ valitDGRfSG+s+g++ighv+PEA++gGpialv+dgD i+iD++  +r+++l +s+eel++Rra+++pp+ k ++g+l ky  +v+sa++G+
  MMETSP0890-20130614|7205_1  62 KAQVGICSVWFEGNPCNMHLLELSDQVKHGVTSAGLVGMRFNTIGVSDGISMGTDGMCYSLQSRDIIADSVETTMSAQWYDALIAIPGCDKNMPGVVMGMGRLDRPALMIYGGTIRAGELptDKSKLDIVSAFQSYGQYAYGKINDEERQAIVRNACPGRGACGGMYTANTMASAIEALGMSLPYSSSSPADSIEKFNECKQdAGKAIRILLEQNIKPSDIMTKEAFENAITIVMATGGSTNAVLHLIAMARAVDVDITLDDFQRISDKVPFLADLKPSGTYVMEDVHKIGGTPALMKYLLDNGMLHGDCLTCTGYTVAENLKDIKiptIPT---EhsdglsfhdVIKPLQDPIKATGHLQIMYGNLCPGGAVAKITGK--EGETFTGSALVYDSEEEMLAALADKKISPGSVVIIRYEGPKGGPGLPEMLTPTSAIMGAGLGDVVALITDGRFSGGSHGFCIGHVTPEAQVGGPIALVQDGDPIRIDARydARTVDLVISDEELQARRAAWSPPPLKATKGTLYKYICTVKSASDGC 594
                 679********************************************************************************************************************976778999*****************************************************************9998877653889999999*****************************************************************************************************************8555222...2234677888**********************************..9999*******************************************************************************************************98779********************************************9 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     6e-06     0.027      12      95 ..     233     323 ..     228     329 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6e-06
                 HHHHHHH---EEEE---HH------------------........----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG CS
   PF13561.1  12 iakalaeaGaevilttwvpaklkkkvqelakelpadv........vplDvtseedvselaekvkedlggkiDilvhsianspeervekplle 95 
                  a a+++ G ++ +++++pa + +k++e +++ ++ +         p D+ ++e +++ +  v+++  g+   ++h ia++   +v   l +
  MMETSP0890-20130614|7205_1 233 MASAIEALGMSLPYSSSSPADSIEKFNECKQDAGKAIrilleqniKPSDIMTKEAFENAITIVMATG-GSTNAVLHLIAMARAVDVDITLDD 323
                 678888999999999*****99999999999999775556666647********************7.*************99777766655 PP

>> PF04023.9  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012        57       3      41 ..     334     374 ..     333     379 .. 0.89
   2 ?    6.2   0.0    0.0019       8.8      10      50 ..     430     481 ..     424     486 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
                 HCCHTTTSEEEEGGGST..THCSHHHHHHHTT-----EEEE CS
   PF04023.9   3 LsdlkeGesgeiarird..edpellrrLsemGlspGqrvev 41 
                 L+dlk+  +++ + +++  + p+l+++L + G+  G  +++
  MMETSP0890-20130614|7205_1 334 LADLKPSGTYVMEDVHKigGTPALMKYLLDNGMLHGDCLTC 374
                 899999999999999988778*************9988876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0019
                 SEEEEGGGSTT...........HCSHHHHHHHTT-----EEEEEE....--- CS
   PF04023.9  10 esgeiarirde...........dpellrrLsemGlspGqrvevvaqnpfggp 50 
                   ++i++ ++e           ++e+l+ L++  +spG++v +  ++p ggp
  MMETSP0890-20130614|7205_1 430 AVAKITGKEGEtftgsalvydsEEEMLAALADKKISPGSVVIIRYEGPKGGP 481
                 5555555444355556666666899****************99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.51s 00:00:01.42 Elapsed: 00:00:00.89
# Mc/sec: 1685.53
//
Query:       MMETSP0890-20130614|7211_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-29  101.2   0.0    2.1e-28   98.7   0.0    2.2  2  PF08153.7  NGP1NT (NUC091) domain
    2.6e-17   62.7   0.0    6.5e-14   51.8   0.0    2.6  2  PF01926.18 50S ribosome-binding GTPase
    6.1e-06   25.6   0.0      0.042   13.1   0.0    3.4  2  PF00009.22 Elongation factor Tu GTP binding domain
    1.8e-05   23.9   0.0    0.00012   21.2   0.0    2.0  2  PF02421.13 Ferrous iron transport protein B
    0.00018   20.6   0.0    0.00036   19.6   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
     0.0021   17.8   0.3       0.49   10.0   0.1    3.2  3  PF00350.18 Dynamin family
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.057   13.6   0.0    1.8  1  PF13191.1  AAA ATPase domain
      0.037   13.1   0.1        1.1    8.4   0.0    2.2  2  PF00025.16 ADP-ribosylation factor family
       0.06   13.7   0.1       0.23   11.8   0.0    2.1  2  PF08477.8  Miro-like protein
      0.065   11.8   0.0       0.12   11.0   0.0    1.4  1  PF03308.11 ArgK protein


Domain annotation for each model (and alignments):
>> PF08153.7  NGP1NT (NUC091) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   1.5e-31   2.1e-28       1     130 []      36     193 ..      36     193 .. 0.86
   2 ?   -1.8   0.0       1.9   2.5e+03      86     107 ..     210     231 ..     203     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 1.5e-31
   PF08153.7   1 mykekkakrnekgkiikaaefq.......skeaevariePdrkWFgntrvisqeaLekfreeleekkkdpysvllkrskLPlsLlkdk...............kkkkkkvkiletesfeetF....gpkaqRkrpkl..avssleelakkaeekeeky 130
                 my+  + +rn +gk++    ++       + +a++ ri+Pdr+WFgntr+i+q++L+kfr e+ + + +py+v+l+r+k+P+ L+kd+               +++ k+ ++l+ e+f++tF    g  + Rkrpkl   +  le la +a+e++e+y
  MMETSP0890-20130614|7211_1  36 MYRGSRVVRNVSGKVVGGELLDrntaggkEITAQSGRIAPDRRWFGNTRTIGQTELDKFRAEMRTVAANPYQVILHRKKVPVGLVKDEalideketkkaaeknRARAKRRELLDHEPFAHTFcgsaGGTHTRKRPKLggLLGGLEALAARARERQEDY 193
                 99999*********998877765555543447899****************************************************9999999888776554455677789**********655556789******666899**********99988 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.9
   PF08153.7  86 kkvkiletesfeetFgpkaqRk 107
                 ++++ le+e+f ++ g++++R 
  MMETSP0890-20130614|7211_1 210 TDARTLEAEQFRQIDGARQERS 231
                 5678899999999999999985 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       1.9      70     114 .]     242     293 ..     179     293 .. 0.66
   2 !   51.8   0.0   4.7e-17   6.5e-14       2      75 ..     350     419 ..     349     455 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0014
                 H...HHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHHH...TCCCEEEEEEC CS
  PF01926.18  70 k...ylekv.eradvlllvvdasavlkeadkellnele...akkplilvlnk 114
                 +    l kv + +dv+l+v+da++v  +  ++++++++     k l++vlnk
  MMETSP0890-20130614|7211_1 242 RiwaELYKVlDCSDVVLHVLDARDVPGTRCERVISHVKskiGAKHLVFVLNK 293
                 2222244454888********9996666677777777445567999999998 PP

  == domain 2    score: 51.8 bits;  conditional E-value: 4.7e-17
                 EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE.EEEEE---SSSHHHHHHHHHHHHHHHHHH CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek.iilvDtPGiiegasedkeiegikkylekv 75 
                 v+ivG pNvGKS+LinaL ++ ++k + ++g+T+  ++  v  +k i+l+D PG++ +++++    + + +l+ v
  MMETSP0890-20130614|7211_1 350 VGIVGAPNVGKSSLINALRNKVVCKAAPIAGETKVWQY--VSLTKrINLIDSPGVVYDKDKGT---EADAVLRGV 419
                 89*****************999**************66..43443379*******97655554...334444444 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.1e-05     0.042      88     136 ..     248     303 ..     244     337 .. 0.80
   2 !    5.7   0.0    0.0058       7.9       6      27 ..     350     371 ..     345     416 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-05
                 HHHHHT-SEEEEEEETTS-S-HHHHHHHHHHH.HTT--.EEEEEE-TTST.....C CS
  PF00009.22  88 irglrvlDgavlvvdaveGvepqTeevlrlak.klgvk.iivviNKiDrv.....e 136
                 ++ l   D+++ v+da++ + +  e+v+ ++k k g k +++v+NK+D+v     +
  MMETSP0890-20130614|7211_1 248 YKVLDCSDVVLHVLDARDVPGTRCERVISHVKsKIGAKhLVFVLNKCDLVpnwvvK 303
                 5667789*********************999724677799********99644432 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0058
                 EEEEESTT---HHHHHHHHHHC CS
  PF00009.22   6 igiighvDhGKtTltdallyka 27 
                 +gi+g  + GK++l++al  k 
  MMETSP0890-20130614|7211_1 350 VGIVGAPNVGKSSLINALRNKV 371
                 5666666666666666655332 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.25   3.5e+02      80     163 ..     255     342 ..     245     349 .. 0.63
   2 !   21.2   0.0   8.6e-08   0.00012       2      77 ..     349     423 ..     348     432 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.25
                 SEEEEEEEGGGH.....HHHHHHHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG CS
  PF02421.13  80 dviinvvDasnl.....ernLyLtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvktvarkkkgieelleaiievaeke 163
                 dv+++v+Da  +     er +  +   +   +++v +ln++D + +  +k  l++L+++  +  ++ + +k  g +++l+ +++ a+ +
  MMETSP0890-20130614|7211_1 255 DVVLHVLDARDVpgtrcERVISHVKSKI-GAKHLVFVLNKCDLVPNWVVKRWLSELAKTAPCIAFRASRTKPFGKSAVLDVLKQFAKLK 342
                 6677777765442211133333222222.235688899999999888888888888888777777777777777777777776666655 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 8.6e-08
                 EEEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEEEEE----.--SSSSSHHHHHHHHHHHHH CS
  PF02421.13   2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGi.YsLsayseeekvardyllee 77 
                 +v +vG pnvGK++l+nal +  + v   + +  e k  ++    k+++++D PG+ Y+ ++ +e + v r ++  e
  MMETSP0890-20130614|7211_1 349 SVGIVGAPNVGKSSLINALRN--KVVCKAAPIAGETKVWQYVSLTKRINLIDSPGVvYDKDKGTEADAVLRGVVRAE 423
                 6899***************76..5677777777788888888788**********7699888888888888777655 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.6e-07   0.00036      24      97 ..     336     402 ..     322     415 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.6e-07
                 TT-HHHHHHCTTSBEEEE-------HHHHHHH--------S--------------S-BEEE-.---EEES---- CS
  PF03193.11  24 egleelaellkdktsvlvGqSGvGKSsLinallpeldlkvgevseklgrGkhTTtavellklsegglliDtPGf 97 
                 +++++l++  k+  + +vG   vGKSsLinal+++   k + +  +       T+  + ++l++   liD+PG+
  MMETSP0890-20130614|7211_1 336 KQFAKLKRDAKQISVGIVGAPNVGKSSLINALRNKVVCKAAPIAGE-------TKVWQYVSLTKRINLIDSPGV 402
                 56677888777777779**************************999.......778888888888889999987 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   1.4e+03     122     167 ..     247     293 ..     222     294 .. 0.66
   2 !   10.0   0.1   0.00036      0.49       1      21 [.     350     370 ..     350     379 .. 0.86
   3 ?    3.8   0.0     0.029        40      95     117 ..     386     408 ..     374     431 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1
                 HHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH---.---.EE-EEE- CS
  PF00350.18 122 veeyikkadiilavtdanhdlstsealflarevdpk.gkr.tivVltk 167
                 +++ ++ +d++l+v da ++  t   ++++++v++k g +  ++Vl+k
  MMETSP0890-20130614|7211_1 247 LYKVLDCSDVVLHVLDARDVPGT-RCERVISHVKSKiGAKhLVFVLNK 293
                 66777889999999999886554.444444444433144456777776 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00036
                 EEEE--TT---HHHHHHH--- CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlge 21 
                 + +vG+ + GKSSl+naL  +
  MMETSP0890-20130614|7211_1 350 VGIVGAPNVGKSSLINALRNK 370
                 679**************9665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.029
                 EEETTS-SEEEEE---------- CS
  PF00350.18  95 ilsllvkgltlvDtPGldsvnkr 117
                 ++ +l k ++l+D+PG+   +++
  MMETSP0890-20130614|7211_1 386 QYVSLTKRINLIDSPGVVYDKDK 408
                 56678899********9554444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.2e-05     0.057      23      58 ..     345     382 ..     324     491 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.2e-05
   PF13191.1  23 sp..lllvtGpsGiGKSsLlrelakpillerlrfaagk 58 
                     ++ ++G++ +GKSsL+++l+  ++ +++  a++ 
  MMETSP0890-20130614|7211_1 345 AKqiSVGIVGAPNVGKSSLINALRNKVVCKAAPIAGET 382
                 2235788***************8888777766555544 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.056        76      64     127 ..     233     296 ..     223     313 .. 0.65
   2 ?    8.4   0.0   0.00078       1.1       3      48 ..     336     381 ..     334     394 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.056
                 E----GGGGGCGGGGCT...TECEEEEEEETT-CT..THHHHHHHHHHHHTSGGGTTSEEEEEEE-TTS CS
  PF00025.16  64 DvGGqeklRplWknYfe...ktdavifvvDsadre..RleeakeeLkalleeeelkevallvlaNKqDl 127
                 D+  + + R++W + ++   + d+v++v+D+ d    R e   + +     ++++   +l+ + NK Dl
  MMETSP0890-20130614|7211_1 233 DLFAKGQSRRIWAELYKvldCSDVVLHVLDARDVPgtRCERVISHV-----KSKIGAKHLVFVLNKCDL 296
                 66667789****9998722255678888888876411433333333.....233344455556677776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00078
                 CCHHCC--.TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S- CS
  PF00025.16   3 silaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigf 48 
                 + +aklk   k++ + ++G  n GK+ +++ l+++ + +  P  g 
  MMETSP0890-20130614|7211_1 336 KQFAKLKRDAKQISVGIVGAPNVGKSSLINALRNKVVCKAAPIAGE 381
                 678999999*****************************99998875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         3   4.1e+03      56      87 ..     236     267 ..     217     295 .. 0.55
   2 ?   11.8   0.0   0.00017      0.23       2      20 ..     350     368 ..     349     416 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3
   PF08477.8  56 dlggreelkkehelllkkadaillvydltdee 87 
                   g++ ++ +e  ++l  +d++l v+d +d  
  MMETSP0890-20130614|7211_1 236 AKGQSRRIWAELYKVLDCSDVVLHVLDARDVP 267
                 55555555555566677788888888877754 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00017
   PF08477.8   2 vvvvGdkgvGKssllsqlv 20 
                 v +vG ++vGKssl+++l 
  MMETSP0890-20130614|7211_1 350 VGIVGAPNVGKSSLINALR 368
                 78*************9986 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.8e-05      0.12      28      54 ..     346     372 ..     327     379 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.8e-05
                 --EEE--B-------HHHHHH---HHH CS
  PF03308.11  28 ralvvGltGvPGaGkstlveklikelr 54 
                 +   vG+ G P +Gks l+++l ++++
  MMETSP0890-20130614|7211_1 346 KQISVGIVGAPNVGKSSLINALRNKVV 372
                 45679*****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:00.85
# Mc/sec: 1570.32
//
Query:       MMETSP0890-20130614|7217_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      580  (0.0424225); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 199.70
//
Query:       MMETSP0890-20130614|7215_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-92  307.9   0.0    7.4e-92  307.6   0.0    1.0  1  PF00231.14 ATP synthase


Domain annotation for each model (and alignments):
>> PF00231.14  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.6   0.0   5.4e-96   7.4e-92       5     289 ..      37     345 ..      34     346 .. 0.98

  Alignments for each domain:
  == domain 1    score: 307.6 bits;  conditional E-value: 5.4e-96
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---..-----------....-EEEEEE---------HHHHHHHHHHHHCTSSTTS....EEEEE--HHHHHHHTSTTTEEEEEE----S--HHHHHHHHHHHHHTS-----SEEEEEEEEESSSSEEEEEEEEE--.............................HHHHHTSTT----B--.TSSSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----- CS
  PF00231.14   5 eikrriksvkntqkItkAMkmvaasklrkaqerveaarpYaeklekvlselasks..eelehplleqreevkkvllivitsDrGLcGgfNsnvikaaeellkelkaegkevkllvvGkkgrdflkrrkkevvaevtgvsdkptfeeaqeiaeelielfekgevdevelvynkfknalsqeptveqllpi.......................ekeakeeeeeeeesesdyefepdaeevleellpkyvesqlyrallesaasEhaaRmtAMksAtdNakelikkLtlqynraRQaaITqEliEIvsGaea 289
                 e+++riksv ntqkIt+AM++vaa+k+r+aqe+v ++rp+ae+l++v++ l+ +   e l+ p+le r evkkv l++i++D+GLcG++Ns vik++e + +el+ +g++v+++ +G+k ++++krr+ e+ +  ++++++pt e a++++++++++f +ge d+velvy+kf++ + ++pt+++llp+                        k+ +   ++++   +d +fe+d+ ++l+ +lp y+  q++r+l es+asE a+Rm++M+sA+dNak+l k+L+ +ynr RQa +TqE++EIvsGa+a
  MMETSP0890-20130614|7215_1  37 ELRDRIKSVGNTQKITEAMRLVAAAKVRRAQEAVLQTRPFAETLQSVFAGLVDQLgkEPLDLPILETR-EVKKVTLLAIAGDKGLCGSYNSYVIKKVEMRKRELEGQGIQVEIIPIGTKLSAYFKRREIEFPSGSFNCPQVPTAEFASSLSRKVLSSFLDGETDKVELVYTKFVSLIASSPTIRTLLPLsatgietegdeifelttqdgdfvVKTTEFPPAQAQVFPKDTIFEQDPIQILNGILPLYLDGQILRSLQESVASELASRMQSMQSASDNAKDLKKSLSQTYNRIRQAGVTQEILEIVSGANA 345
                 89*************************************************9996558899*******.**********************************************************************************************************************************************977778888899999**********************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.97
# Mc/sec: 859.72
//
Query:       MMETSP0890-20130614|7214_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-11   41.8   0.0    9.2e-11   40.8   0.0    1.5  1  PF13148.1 Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   6.7e-15   9.2e-11     134     244 ..     189     296 ..     114     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 6.7e-15
   PF13148.1 134 ndaTpeallelLedngggllifsdEadtlltgigrsdygknsdlllkawdGdplsvdRktrge.reienprlsvllsiQPaqlkrlipsaenegargsGllaRfl.yampast 244
                    T+ +l++ L++ +    i+ +E+++ll+ i+ +++++ +++    +++++ +   kt +  ++i++p l++l ++QP++++++++  +n+++  +G+  Rfl  ++ +s 
  MMETSP0890-20130614|7214_1 189 PSFTGRGLARELMNAP--TKILASEGHILLDIIA-NEKMELLHTTVCSYQHESCKKTLKTAQDsYNITHPSLAILAMVQPSIYYNFVL--RNPELVHQGFNNRFLfWVIIDSE 296
                 4589************..66789***********.8***************************888*********************9..***************76665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:01.29
# Mc/sec: 1317.07
//
Query:       MMETSP0890-20130614|7218_1  [L=921]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.016   14.1   0.0    2.5  3  PF06003.7 Survival motor neuron protein (SMN)


Domain annotation for each model (and alignments):
>> PF06003.7  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3      0.14   1.9e+03     155     155 ..     174     174 ..     125     217 .. 0.49
   2 ?   -2.8   0.6      0.17   2.4e+03     140     171 ..     273     304 ..     239     320 .. 0.54
   3 ?   14.1   0.0   1.2e-06     0.016      30     105 ..     830     903 ..     815     915 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.14
   PF06003.7 155 k 155
                 k
  MMETSP0890-20130614|7218_1 174 K 174
                 2 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.17
   PF06003.7 140 sstdesdrssrsheskdksnlekakssqknlr 171
                 +s + + + + s + ++ s+ + ++ s+kn r
  MMETSP0890-20130614|7218_1 273 YSEQLARQRMGSARRRQSSEASESRHSPKNDR 304
                 33333334444444444444444555554444 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 1.2e-06
   PF06003.7  30 knedcaepaekeeknpgkkrknnkknrsrkkcnaaplk.kwkvgdscnavwsedgnlysatiasidakrgtcvvvyt 105
                 k++d  + ++++ + p  kr    k +s++     pl   +++g    a w+ d  +ysati++++ ++g+  + y 
  MMETSP0890-20130614|7218_1 830 KSNDHPIQTQTDIRAPTPKRT---KRKSQRYFGPLPLSsAFRIGGRVLARWARDQGIYSATITALHPDHGAVDLEYE 903
                 667777777778777777775...44556666777875279************************999988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:01.33
# Mc/sec: 1659.43
//
Query:       MMETSP0890-20130614|7216_1  [L=1185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.5   0.1      0.059   12.6   0.1    1.5  1  PF13890.1 Rab3 GTPase-activating protein catalytic subunit


Domain annotation for each model (and alignments):
>> PF13890.1  Rab3 GTPase-activating protein catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.3e-06     0.059      95     144 ..      71     122 ..       1     141 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-06
   PF13890.1  95 rWysPrDwieeeeaeekd..sledrgklsermqkegnlWeelWeeakplpas 144
                 +W+ P+D+ + e +++++  + ++r ++s+++qk +n+W++l +  +++pa+
  MMETSP0890-20130614|7216_1  71 NWFEPKDPRKFEPKDAEGgiEEQARREVSTALQKMNNIWNDLDRVRESTPAD 122
                 7*******9988666665225788999*************997766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.54u 0.42s 00:00:01.96 Elapsed: 00:00:01.47
# Mc/sec: 1931.76
//
Query:       MMETSP0890-20130614|7225_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-53  179.1   0.0    7.8e-53  179.1   0.0    1.5  2  PF01008.12 Initiation factor 2 subunit family
  ------ inclusion threshold ------
      0.025   13.9   0.9      0.091   12.1   0.0    2.4  2  PF14140.1  YpzI-like protein


Domain annotation for each model (and alignments):
>> PF01008.12  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4      0.37   2.5e+03      81     107 ..      51      77 ..       8      83 .. 0.55
   2 !  179.1   0.0   1.1e-56   7.8e-53       2     281 .]     105     383 ..     104     383 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHH---TGGCCH-SB CS
  PF01008.12  81 kikelikeieeadekigdiaaelikdg 107
                  i++       +d++i+++a+ l++++
  MMETSP0890-20130614|7225_1  51 SICQKKAIESDNDKNISRVASHLLNQH 77 
                 233333334456777777777777555 PP

  == domain 2    score: 179.1 bits;  conditional E-value: 1.1e-56
                 ----HHHHHTTTHHHCCHHTCCH....TSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHH.HHCCTT-SSHHHHHHHHHHHHHHHHHH.HHHHHHH---TGGCCH-SB-EEEEES..----TSHHHHHHHHCCB--EEEEE--TTTT---SHHHHHHHHT-EEEEE-GGGHHHHHHHTECEEEE---EEETTE-EEEE---HHHHHHHHHTT-EEEEB--GGGBETTS--GGGS---B--THHHHBB---BCSSTT-EE--BSEEEEEGGG-SEEB-----B-S CS
  PF01008.12   2 vrGspaiaiaalevllevikdak....tskvaeLkeklrkaidlLkkarPtavslgnairrllk.iselksssdvkeakksliekikelike.ieeadekigdiaaelikdgdtilTic..nsktvlevlraaakekkkfkVivvEsrPrlqGrltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellvvtgeriaeeelkvvnpafDvtPpelItliITevGvltp 281
                 ++Gs++++ia+l ++++++ d++    +  +++L +kl++a++ L+++rP a+s+g a+r+l + +++l ++++ +ea+ +l+++++ +++e i+   ++ig+ +a +i ++d + + +   s  ++e +   a e+ +f+Vi  ++ P++ Gr ++ +L + gip+t++   a+ + + + v  +++ Ad++ +nG+  + +G + lA+ Ak + +pvlv++es+kf+  ++ld+   +e    e +l  + + +         + fDvtP+ +It++ITe G+++p
  MMETSP0890-20130614|7225_1 105 IDGSNERCIAMLVAIKQMALDYQcpsdAVVSRDLDKKLKQAVQHLIESRPHAISMGAAVRQLRAiVARLPPETTQTEARRELCDAVDAFAQErIILPGQVIGRTGAAKIRNNDLVAVFGggASTDAIEAILFSATEHCRFSVILIDTAPYFHGRTLLSKLHHFGIPTTYVHLRAAHFALAKGVHSLFIAADAVYANGSALADAGAAALAMTAKYHCVPVLVCCESYKFHAATHLDSLGWNEVITNETILIPKRTLF---------LRFDVTPATYITAFITEHGLIPP 383
                 79*********************44444446788******************************9999*************************************************997555558888888777789***************************************************************************************************9999999888888888666.........78******************998 PP

>> PF14140.1  YpzI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05     0.091       5      26 ..      47      68 ..      45      79 .. 0.88
   2 ?   -2.8   0.1      0.59     4e+03       8      13 ..     140     145 ..     139     153 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
   PF14140.1  5 RQEkkLkaskrvESDRDQslsy 26
                RQEk + ++k +ESD D  +s 
  MMETSP0890-20130614|7225_1 47 RQEKSICQKKAIESDNDKNISR 68
                9*****************9985 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.59
   PF14140.1   8 kkLkas 13 
                 kkLk+ 
  MMETSP0890-20130614|7225_1 140 KKLKQA 145
                 999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1160  (0.0848449); expected 273.4 (0.02)
Passed bias filter:                      577  (0.042203); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.43s 00:00:01.31 Elapsed: 00:00:00.79
# Mc/sec: 1237.61
//
Query:       MMETSP0890-20130614|7219_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-51  171.9   0.8    4.8e-50  169.1   0.2    2.1  2  PF03031.13 NLI interacting factor-like phosphatase
  ------ inclusion threshold ------
      0.018   13.9   0.5        0.3    9.9   0.2    2.3  2  PF11019.3  Protein of unknown function (DUF2608)
      0.073   12.8   0.0        2.9    7.6   0.0    2.4  2  PF00239.16 Resolvase, N terminal domain


Domain annotation for each model (and alignments):
>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.072   3.3e+02      22      67 ..      74     121 ..      22     146 .. 0.78
   2 !  169.1   0.2     1e-53   4.8e-50       2     153 .]     227     387 ..     226     387 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.072
  PF03031.13  22 e..ektkasvkkRPgldeFLkelskayevviftasskeyadavldkld 67 
                 +  ek++ ++  R + ++ L+e + + e +++  +++++ ++++   d
  MMETSP0890-20130614|7219_1  74 DeiEKKENKILHRSFSEDALQESKDWDEFALYGGEEEDFENDIIFDQD 121
                 134777888888999999999999999999999999888888876555 PP

  == domain 2    score: 169.1 bits;  conditional E-value: 1e-53
  PF03031.13   2 tLVLDLDetLvhsksekdee.......e...ektkasvkkRPgldeFLkelskayevviftasskeyadavldkldpkkklfkkrlyresctlengkyvKdLsllgrdlskvvivDdsprsfelqpdnlipiepfygdsdkdtellkllpflealeksddvr 153
                 tLVLDLDetLvhs+ e+  +       +   ++++++vk RP+l++FL ++++++e+v+ftas+k ya+ +ld++dp++ +f++rlyre c   +g y KdL+ lgrdlsk+ i+D++ ++f  qpdn+ipie++++d d+dt+ll+llpfl++l+++ddvr
  MMETSP0890-20130614|7219_1 227 TLVLDLDETLVHSQMEPIVNpdfvftvHacgTSSTVYVKSRPYLKQFLAAVQRHFEIVVFTASHKAYAATLLDHIDPENIFFDHRLYREACSNVDGLYLKDLDRLGRDLSKTTIIDNTLYVFGYQPDNAIPIESWFDD-DSDTALLDLLPFLDHLRNADDVR 387
                 9************954433355776651567999********************************************9999**************99****************************************.*****************99**98 PP

>> PF11019.3  Protein of unknown function (DUF2608)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   6.6e-05       0.3       7      42 ..     211     248 ..     205     252 .. 0.76
   2 ?    1.6   0.0     0.021        97     165     189 ..     268     292 ..     260     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.6e-05
   PF11019.3   7 fkkV.qdylekankdtLvvfdiDdtLltpk.eplgssi 42 
                   k+ q+ ++ + k+  +v+d+D+tL+ ++ ep+ +++
  MMETSP0890-20130614|7219_1 211 SLKIqQNLKYVEHKTHTLVLDLDETLVHSQmEPIVNPD 248
                 557744444444599999************99999887 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.021
   PF11019.3 165 eaLkylLaktnkspkkIifvddske 189
                 + Lk++La ++++++ ++f ++ k 
  MMETSP0890-20130614|7219_1 268 PYLKQFLAAVQRHFEIVVFTASHKA 292
                 579***********98888776665 PP

>> PF00239.16  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.025   1.2e+02      45      66 ..     264     287 ..     245     299 .. 0.80
   2 ?    7.6   0.0   0.00064       2.9      55      82 ..     315     342 ..     310     349 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.025
                 SH.HHHHCCHHHH---.--EEEES CS
  PF00239.16  45 ae.Rpelqrlledlre.gdvlvve 66 
                  + Rp l+++l+++++  +++v++
  MMETSP0890-20130614|7219_1 264 VKsRPYLKQFLAAVQRhFEIVVFT 287
                 335*************66888876 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00064
                 HH-----EEEESSGCC----HHHHHHHH CS
  PF00239.16  55 edlregdvlvvekldRlgRslrdllell 82 
                 e++++ d l+ ++ldRlgR+l++++ + 
  MMETSP0890-20130614|7219_1 315 EACSNVDGLYLKDLDRLGRDLSKTTIID 342
                 467789**************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1203  (0.0879901); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:00.92
# Mc/sec: 1101.80
//
Query:       MMETSP0890-20130614|7223_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.68
# Mc/sec: 158.58
//
Query:       MMETSP0890-20130614|7226_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   24.6   0.4    1.6e-05   24.1   0.3    1.2  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.3   1.2e-09   1.6e-05       3      67 ..      34      96 ..      32      97 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.2e-09
                HHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEEE CS
  PF01423.17  3 lqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlvs 67
                l++ +++r+  elkn +++ G L  +D ++N+ L d++ +  +++k   +l+++++ G+ i++v 
  MMETSP0890-20130614|7226_1 34 LESVRDERLCFELKNETTLSGLLFDVDSNLNVNLVDAVLQNLDGTKF--RLDETYVNGSMIRYVR 96
                56678899999***********************************9..**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|7224_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-64  215.8   0.0    8.5e-64  215.1   0.0    1.3  1  PF00176.18 SNF2 family N-terminal domain
    9.5e-12   44.5   0.0    4.9e-11   42.2   0.0    2.3  2  PF00271.26 Helicase conserved C-terminal domain
    3.6e-08   32.9  10.7    7.1e-08   32.0   7.4    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    4.2e-08   32.6  11.1    8.7e-08   31.6   7.7    1.6  1  PF13639.1  Ring finger domain
    7.9e-07   28.5  10.1    1.4e-06   27.7   7.0    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    1.5e-06   28.0   0.0    5.8e-06   26.1   0.0    2.0  1  PF04851.10 Type III restriction enzyme, res subunit
    0.00051   19.5  12.2     0.0011   18.4   8.5    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0085   15.8   0.0      0.016   14.9   0.0    1.5  1  PF00397.21 WW domain
  ------ inclusion threshold ------
      0.048   13.8   0.1       0.12   12.5   0.1    1.6  1  PF12998.2  Inhibitor of growth proteins N-terminal histone-binding


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.0   5.6e-67   8.5e-64       1     291 [.      78     409 ..      78     413 .. 0.90

  Alignments for each domain:
  == domain 1    score: 215.1 bits;  conditional E-value: 5.6e-67
                 TTT---HHHHHHH................................................T---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHHSTT--EEE-----HHHHHHHHHHS--------SEEEE-TTHHHHTT...TT----E.............EEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B-----SS-SHHHHHHHHHH-------------.....-TTHHHHHHHHHHHGGGGG-BB--GGGGTTTS--EEEEEEEE---H...HHHHHHHHHHHH--------------.....THHHHHHHHHHHHH CS
                 xxxxxxxxxxxxx................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00176.18   1 yQkegvawllrre................................................akklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekhagalrvvvyhgqtrerskvaesmvsakqlatadvvittYdvlkkekkeesllkkve.............wkrvvlDEahrlknsksklaeallklktkkrlcltGTPiqnnleelyaLlnFlrprpltelrvfekaferpaeekskeglrrllkllkplllrrtkkdvekglppksehllevrlsk...eqkelYnklltkaravlkkaveaaeeevrlksvltelqqlrkicn 291
                 +Q++g+awl  re                                                ++++ + ggiLademG+GKTl ++ l +  L+      ++tLvVvP+sl+++W ++ ++h   lr ++yhgq+r+            + +++dvvit+Y +l +e++ +  + +++             w+rv+lDEah ++n k+k+++a+++++++kr+cltGTP+ n++ +++aL++F++  p+++++vf+++++rp+++++++gl+ l+ l+++l lrr k+ +  +lpp++ ++++v++ k    +++ Y+ l++   +++  +v +  + +++  +l+ l++lr+ic 
  MMETSP0890-20130614|7224_1  78 HQLQGLAWLTAREsgfpladavkgidgtdnpnlplpplwekrsekgrdvffnvatntstpqQPNY-AFGGILADEMGMGKTLSMLLLAA--LRR-----GKTLVVVPTSLIENWSSQAQEH-TYLRPLIYHGQERNIA----------NIDDYDVVITSYGTLTSEHAPRTGVDNAKrqkkastgplgfaWDRVILDEAHTIRNIKTKTFQAVMAIQARKRWCLTGTPLINKVDDFMALFQFVGAPPVDDPEVFKRCISRPIKNQDPAGLACLRVLVQSLSLRRSKAII--NLPPRTLEIRYVDIFKnsfANQQTYDALFK--TTAIGIKVLGDDALSNYTAILEVLTRLRQICS 409
                 9************9999999999999999999999999999999999999999999988865555.89***************987666..887.....99*******************9.99**********8885..........89**************77766666666555667778888888************************************************************************************************987..79*********9986522257899998885..677777888888889999************96 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.5   5.4e+03      17      33 ..     442     458 ..     437     476 .. 0.83
   2 !   42.2   0.0   3.2e-14   4.9e-11       3      78 .]     578     656 ..     576     656 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.5
                 S-HHHHHHHHHHHHTTT CS
  PF00271.26  17 lpqnereeileqfnagk 33 
                 ++++e  +il++f+++ 
  MMETSP0890-20130614|7224_1 442 ISKEEAVAILSRFKDSL 458
                 67889999999999875 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 3.2e-14
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   3 lekkgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 l + +i++  ++g +++ +r +i+++f+++ +     lv+ + ++ G++l+++++V  +d++++ ++  Q+++R++R+g
  MMETSP0890-20130614|7224_1 578 LDATNISSDLFTGAISTAKRAAIVHSFQNDANgprVLLVSLKCGGQGLNLTAASTVLLLDPWWNASTEDQALDRVHRIG 656
                 667899***********************9999999*****************************************87 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   7.4   4.7e-11   7.1e-08       2      46 .]     464     509 ..     463     509 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 4.7e-11
   PF13923.1   2 rfsCpiCleel.enpviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                 +f+C+iCl e  ++ + ++pC H yC +C++++l ++ +kC +Cr+
  MMETSP0890-20130614|7224_1 464 SFECSICLREInIDQARALPCTHFYCATCCDRLLASTPSKCAMCRQ 509
                 79******9996678789******************999*****96 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   7.7   5.7e-11   8.7e-08       2      46 .]     466     510 ..     465     510 .. 0.93

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 5.7e-11
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrss.nsCPlCrkp 46 
                 eC+iCl+e+ + ++++ lpC H+++++C+d++l s  ++C +Cr+p
  MMETSP0890-20130614|7224_1 466 ECSICLREI-NIDQARALPCTHFYCATCCDRLLASTpSKCAMCRQP 510
                 8********.58*********************98747******97 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   7.0   9.3e-10   1.4e-06       2      49 ..     464     513 ..     463     514 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 9.3e-10
   PF13920.1   2 kktCvvCler..eadvlllpCgHlclCeeCaerllk.rkkkCpiCrspies 49 
                 +++C +Cl +    ++  lpC H   C++C++rll  +  kC +Cr+pi++
  MMETSP0890-20130614|7224_1 464 SFECSICLREinIDQARALPCTHF-YCATCCDRLLAsTPSKCAMCRQPISA 513
                 579******7435689********.*********98899**********86 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.8e-09   5.8e-06      28     182 ..     146     286 ..     129     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.8e-09
  PF04851.10  28 glivmaTGtGKTlvaasliarlar.kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esks...eslealldefdviiiDEaHrlsakkk..yreilefkkafllglTATp 182
                 g+++ + G+GKTl ++ l+a+l r k+l++vp+ +l+e +  +                   ++  ++    ++ ++++  + +d+++++t++ +l+++   +   d   k+   +s   l+ + d +i DEaH +   k   +++++++++ ++  lT+Tp
  MMETSP0890-20130614|7224_1 146 GILADEMGMGKTLSML-LLAALRRgKTLVVVPT-SLIENWSSQA------------------QEHTYLRPLIYHGQERNIANIDDYDVVITSYGTLTSEHAPRTGVDnA-KRqkkASTGPLGFAWDRVILDEAHTIRNIKTktFQAVMAIQARKRWCLTGTP 286
                 5666678*********.9999999********8.6778888666..................22233334445555556667899***********9998766655532.2234588888888999********998777667999999999999999*999 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   8.5   7.2e-07    0.0011       1      41 []     467     507 ..     467     507 .. 0.96

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.2e-07
                 -TTTSSS-SSEE..BSCTS-EE-CHHHHHHHCST-----TTT CS
  PF00097.20   1 CpiCleeakepn.elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iCl e+ + + ++l+C+H +C +C +++l  ++  kC +C
  MMETSP0890-20130614|7224_1 467 CSICLREINIDQaRALPCTHFYCATCCDRLLA-STPSKCAMC 507
                 ******99887779******************.********* PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.016       1      27 [.     112     136 ..     111     136 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
                 ---SEEE.E.E----EEEEETTT--EE CS
  PF00397.21   1 lppgWeersddddGrvYYyNheTgetq 27 
                 lpp We+rs +  Gr  ++N +T++++
  MMETSP0890-20130614|7224_1 112 LPPLWEKRS-EK-GRDVFFNVATNTST 136
                 6777*****.69.*************8 PP

>> PF12998.2  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.8e-05      0.12      42     100 ..     519     580 ..     507     582 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.8e-05
   PF12998.2  42 iekfikengskkltke....keeellkeiqeelkkaqelldeKvqlaeqalelvdkhirrLdk 100
                 iek +++++++  ++e    + e+   ++   ++++qel +eK  + +q +++++k   rLd+
  MMETSP0890-20130614|7224_1 519 IEKVVEQQNNN-AEPEpmdlTNEDDAPKLTAVMETLQELKEEKAVVFSQFVKTLTKLKDRLDA 580
                 66777777664.23333347788889999999******************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:01.33
# Mc/sec: 1327.91
//
Query:       MMETSP0890-20130614|7227_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-42  145.4   0.0    5.1e-31  107.3   0.3    2.1  2  PF00743.14 Flavin-binding monooxygenase-like
      4e-23   82.4   0.0    6.1e-23   81.8   0.0    1.3  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    1.5e-12   47.0   0.0    3.2e-11   42.6   0.0    2.5  3  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
    3.5e-07   30.2   0.0      6e-07   29.4   0.0    1.5  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    1.6e-05   24.6   0.0      4e-05   23.4   0.0    1.7  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    0.00011   20.6   2.0     0.0074   14.6   0.1    2.4  3  PF03486.9  HI0933-like protein
    0.00015   21.4   0.0     0.0051   16.4   0.0    2.6  1  PF13454.1  FAD-NAD(P)-binding
     0.0016   17.4   0.1       0.16   10.8   0.0    2.1  2  PF01494.14 FAD binding domain
     0.0016   17.4   0.7      0.026   13.5   0.1    2.1  2  PF01946.12 Thi4 family
     0.0019   18.4   0.9       0.21   11.9   0.0    2.7  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
     0.0061   16.6   0.1        1.9    8.7   0.0    3.1  3  PF13241.1  Putative NAD(P)-binding
     0.0062   14.6   0.0       0.01   13.9   0.0    1.2  1  PF06039.10 Malate:quinone oxidoreductase (Mqo)
     0.0084   15.1   0.0       0.79    8.6   0.0    2.3  2  PF01593.19 Flavin containing amine oxidoreductase
     0.0097   14.6   0.1      0.022   13.5   0.0    1.5  1  PF00890.19 FAD binding domain
  ------ inclusion threshold ------
      0.011   15.7   0.8       0.06   13.3   0.0    2.2  2  PF13333.1  Integrase core domain
      0.017   14.1   0.0      0.025   13.5   0.0    1.3  1  PF12831.2  FAD dependent oxidoreductase
      0.018   15.0   0.1        1.6    8.7   0.0    2.5  2  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.036   12.8   0.0       0.16   10.7   0.0    1.9  2  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.3   6.7e-34   5.1e-31       1     214 [.       5     206 ..       5     217 .. 0.88
   2 !   35.7   0.0   3.4e-12   2.6e-09     319     450 ..     371     500 ..     355     510 .. 0.85

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 6.7e-34
  PF00743.14   1 akkvaviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstr 214
                 +k v v+GaG sGl  ik  le+g e +cfe+s+ +GG++         ++s y  +    s   + +sdfp ++d   + ++++  eyl+l+a++f+l   i+f t v + +++ d  +    +v t   g + +   d + +ctG    p+   +  pG  +   + +hs ++++   +k+k v+viG G+s++diav++   a+   + +r
  MMETSP0890-20130614|7227_1   5 KKTVCVVGAGASGLCCIKEHLENGSEVICFEKSHVVGGVFSTL------KSSSYDGLYLTISNVFMSYSDFPWQNDSIRYSPKEEYAEYLNLYADHFKLREKIKFGTSVEQCTRTEDGWNIIAKDVKT---GNETNYTCDFLTICTGSNSVPKDISKIAPGFMR---EKIHSIQFQDATPYKDKTVIVIGAGESASDIAVDIGTIAKSCTVWSR 206
                 589***********************************98643......4455777777778889************************************************999975555555555...45556678999******9999988889999665...669***********************************998877766 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 3.4e-12
  PF00743.14 319 edidvvifatGytfafpfleeslvkveknkvslykkvfpanlekptlaiiGliqp.lGsilptvelqarwavrvlkGlkklpsekelleeitekkekkakrfgesksktiqtdyiayldelaaligakpnlls 450
                  ++d vi + Gy  + pfl+   + ++ +  + +k+ fp+nl +  la iG  +p +G i +++el ar+ + ++ G k lp +   +   + k e   +++  s   +   dy ++ d +a+lig+kp +++
  MMETSP0890-20130614|7227_1 371 VNVDSVICCIGYETTCPFLDIDDLGICLDPRTWFKHCFPPNLGH-KLAFIGWARPhQGGIPAAAELLARYHALIVAGKKDLPENYAQIGMDEGKAE--SEFYFLSPNLKSLVDYPSFADSVAKLIGCKPRMPM 500
                 589*****************9999******************87.69******98357788889******************99876654444433..45566677778889*****************9986 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0     8e-26   6.1e-23       1     201 [.       9     209 ..       9     211 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 8e-26
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrlhqpsffssdfgvndleklsldsspkwrikaelasgeeisayledvarrlglk..vrlstrvteveregdrfevrvtdg.....revrakalvlatgavskpktlg..lpgsadkeavhleevlepedlkgkrvvVvGgghsAidallnLldlgqkltwitrspl 201
                 +VvGAGa Gl+ + + le+g + +i +++++ +Gg +++  s     + +++ + ++v     +s+++ p ++   +++  ee+++yl+  a++++l+  ++++t v++++r++d++++  +d       +++++ l ++tg  s+pk ++   pg   +e +h+ ++ ++  +k+k+v+V+G+g+sA d++ ++   ++  t+  r+p 
  MMETSP0890-20130614|7227_1   9 CVVGAGASGLCCIKEHLENGSE-VICFEKSHVVGGVFSTLKSS---SYDGLYLTISNVF----MSYSDFPWQNDSIRYSPKEEYAEYLNLYADHFKLRekIKFGTSVEQCTRTEDGWNIIAKDVktgneTNYTCDFLTICTGSNSVPKDISkiAPG-FMREKIHSIQFQDATPYKDKTVIVIGAGESASDIAVDIGTIAKSCTVWSRRPF 209
                 8*********************.*************9976532...3456666666555....355555544445689*******************889******************999887888999************99999977665677.778***********************************999999999988885 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.16   1.2e+02     188     209 ..       3      24 ..       1      37 [. 0.79
   2 !   42.6   0.0   4.3e-14   3.2e-11      88     213 ..      75     198 ..      68     214 .. 0.83
   3 ?   -2.0   0.0       1.5   1.2e+03     323     340 ..     366     383 ..     361     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.16
   PF13434.1 188 lkkkriavvGsGqSaaeifldl 209
                  +kk++ vvG+G S+   +++ 
  MMETSP0890-20130614|7227_1   3 MSKKTVCVVGAGASGLCCIKEH 24 
                 5789**********97665555 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 4.3e-14
   PF13434.1  88 etflpsRkefndYlrWvasqle..eqvrfgeeVeevepdeeeeeelltveskd.aegeeeellarnlvlgtGtepylPealkkle..gkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrq 213
                 +  + +++e+++Yl+  a++++  e+++fg++Ve+ +  e+     +++  kd ++g+e+++++  l + tG++ ++P+ ++k+     ++ +hs ++ + +    k+k++ v+G+G Sa +i+ d+ +  
  MMETSP0890-20130614|7227_1  75 SIRYSPKEEYAEYLNLYADHFKlrEKIKFGTSVEQCTRTEDG----WNIIAKDvKTGNETNYTCDFLTICTGSN-SVPKDISKIApgFMREKIHSIQFQDAT--PYKDKTVIVIGAGESASDIAVDIGTIA 198
                 5567899*************987688***********99975....7777777799****************76.799999999855357889999998876..79******************9986554 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.5
   PF13434.1 323 geeetleadavvlATGYr 340
                 ++++ +++d v+++ GY+
  MMETSP0890-20130614|7227_1 366 QSRTIVNVDSVICCIGYE 383
                 6678899**********8 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   7.9e-10     6e-07       2     159 ..       8     240 ..       7     405 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 7.9e-10
                 EEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH..................................HHHHHHHHCTCEEEHCHEEEEEETTTTEE....EEEEEEEEEEEETEEEEEEESEEEE----B----TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-.........................................................- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................................x RF
   PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreeleelal..................................kvvdelekagieilleknvvkidsgskkv....vqeagavkadekgkgrdikydklviAtGarprtlgipgvevailargvedsdeilellekpkkvvvvG.........................................................t 159
                 v+++G+G+ Gl ++k+   +g +v+++ek+     ++g++ ++l   +++g     +  +                                  k+               +++k     +++       +   k++++g++  +++d l i+tG+++   +i     ++  +++++ +  +    k k+v+v+G                                                         +
  MMETSP0890-20130614|7227_1   8 VCVVGAGASGLCCIKEHLENGSEVICFEKSH----VVGGVFSTLKSSSYDGLYLTIS--NvfmsysdfpwqndsiryspkeeyaeylnlyadhfKL--------------REKIKFGTSVEQCtrteDGWNIIAKDVKTGNETNYTCDFLTICTGSNSVPKDISKIAPGFMREKIHSIQFQDATPYKDKTVIVIGagesasdiavdigtiaksctvwsrrpfllaprfpeminndpnhdeykimqtdslwseL 240
                 89*************************9977....8888888888888888766553..235789999999***9999**7666555433333333..............4444444444444444423334556778999999*************88778887666677566666666666656666******7777666666666666666666666666666666666666665555555555555550 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.3e-08     4e-05       1      40 [.      10      49 ..      10      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.3e-08
   PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasvev 40
                +vGaG+sGl++  +  ++g +v  +ek + +GG  ++ + 
  MMETSP0890-20130614|7227_1 10 VVGAGASGLCCIKEHLENGSEVICFEKSHVVGGVFSTLKS 49
                8********************************9988765 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   9.8e-06    0.0074       2      36 ..       7      41 ..       6      45 .. 0.92
   2 !    5.3   0.0    0.0067       5.1     125     169 ..     100     148 ..      88     152 .. 0.78
   3 ?   -3.7   0.1       3.6   2.8e+03       2      10 ..     177     185 ..     176     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.8e-06
   PF03486.9  2 dviviGgGaAGlmaAisaakrgakVllldkakklg 36
                +v v+G+Ga+Gl +  +  ++g++V+ ++k + +g
  MMETSP0890-20130614|7227_1  7 TVCVVGAGASGLCCIKEHLENGSEVICFEKSHVVG 41
                699***************************98776 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0067
   PF03486.9 125 kirletevksvekeedgafrvktk....seeeleadklvlAtGGkSiPk 169
                 ki+  t+v++ +++edg   ++ +    +e+++++d l + tG++S+Pk
  MMETSP0890-20130614|7227_1 100 KIKFGTSVEQCTRTEDGWNIIAKDvktgNETNYTCDFLTICTGSNSVPK 148
                 78888999999999888544333233448999****************7 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.6
   PF03486.9   2 dviviGgGa 10 
                 +viviG+G 
  MMETSP0890-20130614|7227_1 177 TVIVIGAGE 185
                 79******6 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.7e-06    0.0051       2     155 ..      10     143 ..       9     144 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.7e-06
   PF13454.1   2 IiGaGprGlsvlerLlarakkekpleitvfdpspagaggvwrtdq...seelllNtpasqislftddsgpsfleWleaqgaeeaeelepddfppRalygeYlrwvfeelvarlpegvtvrvhraevvdlepegdgqtvll.....adgesleadaVvlAtGh 155
                 ++GaG++Gl+++++ l++       e+ +f++s++  ggv++t +    + l l +++  +s + d +      W ++             + p++ y eYl+ ++++++ r   +  ++   ++v ++++++dg+ ++       +++++++d   ++tG 
  MMETSP0890-20130614|7227_1  10 VVGAGASGLCCIKEHLEN-----GSEVICFEKSHVV-GGVFSTLKsssYDGLYLTISNVFMS-YSDFP------WQNDS----------IRYSPKEEYAEYLNLYADHFKLRE--K--IK-FGTSVEQCTRTEDGWNIIAkdvktGNETNYTCDFLTICTGS 143
                 8************99999.....599******9997.8999995411145566666666666.33433......55554..........47*******************554..4..34.47899999999999866543332266678999999999995 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.017        13       3      33 ..       7      37 ..       5      40 .. 0.87
   2 !   10.8   0.0   0.00021      0.16     127     199 ..     100     168 ..      74     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.017
                CEEE--------HHHHHHHHH.HHEEEEESS CS
  PF01494.14  3 dVlIVGaGpaGlmlallLseaGvrvvlvekh 33
                +V++VGaG +Gl   ++  e G +v++ ek 
  MMETSP0890-20130614|7227_1  7 TVCVVGAGASGLCCIKEHLENGSEVICFEKS 37
                79**********9999999999999988885 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00021
                 EESS-CECCSCCCHHHHHHCCCCEE----EEEEEECEEE-------HCHHHS-GGEEEEEEC-EE-EEEEEEC CS
  PF01494.14 127 qvrfktevlsleqdeegvtavvrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfd 199
                 +++f+t v+  +++e+g +  ++d +tg+e++ ++++l  + G +S v k++    +g+++    ++ ++ f+
  MMETSP0890-20130614|7227_1 100 KIKFGTSVEQCTRTEDGWNIIAKDVKTGNETNYTCDFLTICTGSNS-VPKDISKIAPGFMRE---KIHSIQFQ 168
                 799*******************************************.777777667888866...44444444 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.4e-05     0.026      18      54 ..       6      42 ..       2      46 .. 0.92
   2 ?    2.1   0.0       0.1        78       4      32 ..     162     190 ..     159     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.4e-05
                EEEEEE-------HHHHHHHTSTS-EEEEESSS---- CS
  PF01946.12 18 sDvvivGaGssGltaayylakkdlkvailerklsiGG 54
                + v +vGaG+sGl + +   +++  v+ +e++  +GG
  MMETSP0890-20130614|7227_1  6 KTVCVVGAGASGLCCIKEHLENGSEVICFEKSHVVGG 42
                5699****************************99998 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHTEEEEEEE-------HH CS
  PF01946.12   4 iveryfedllkyaesDvvivGaGssGlta 32 
                 i +  f+d   y ++ v+++GaG s    
  MMETSP0890-20130614|7227_1 162 IHSIQFQDATPYKDKTVIVIGAGESASDI 190
                 5566899999*************997555 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.089        67       2      31 ..       8      37 ..       7      45 .. 0.86
   2 ?   -2.6   0.0       8.7   6.6e+03      56      72 ..     100     116 ..      92     123 .. 0.79
   3 !   11.9   0.0   0.00027      0.21       2      43 ..     178     220 ..     177     222 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.089
                EEEE---HHHHHHHHHHHHTTSEEEEEESS CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierr 31
                v+vvG+G +Gl +  +  + g++V ++e +
  MMETSP0890-20130614|7227_1  8 VCVVGAGASGLCCIKEHLENGSEVICFEKS 37
                89*********9999999999999888876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 8.7
                 EEETTEEEEEEEESEEE CS
  PF00070.22  56 evllntkveeiegsadg 72 
                 +++++t+ve+ + ++dg
  MMETSP0890-20130614|7227_1 100 KIKFGTSVEQCTRTEDG 116
                 58899999999999888 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00027
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHH CS
  PF00070.22   2 vvvvGGGyiGlElAaalaklgkkVtvierrdrll.raldeeia 43 
                 v+v+G+G ++ + A     ++k+ tv  rr+ ll + ++e+i 
  MMETSP0890-20130614|7227_1 178 VIVIGAGESASDIAVDIGTIAKSCTVWSRRPFLLaPRFPEMIN 220
                 89***********************************999886 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0024       1.9       4      39 ..       2      37 ..       1     158 [. 0.73
   2 ?    3.8   0.0     0.077        58       5      20 ..     173     188 ..     170     233 .. 0.87
   3 ?   -0.4   0.0       1.6   1.2e+03      34      69 ..     336     381 ..     317     384 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0024
                --TT-EEEEE-------HHHHHHTT---EEEEE-SS CS
   PF13241.1  4 dlkgkkvlvvGgGevAarkvrklleagakvtvvspe 39
                ++++k+v+vvG+G  ++  ++  le+g +v+   ++
  MMETSP0890-20130614|7227_1  2 RMSKKTVCVVGAGASGLCCIKEHLENGSEVICFEKS 37
                5899************************99887776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.077
                 -TT-EEEEE------- CS
   PF13241.1   5 lkgkkvlvvGgGevAa 20 
                  k+k+v+v+G+Ge A+
  MMETSP0890-20130614|7227_1 173 YKDKTVIVIGAGESAS 188
                 589**********987 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.6
                 EEE-SS--TT-..........T...........-TT--EEEEE--S CS
   PF13241.1  34 tvvspeikele..........elvklaeeefeedlegadlviaatd 69 
                 ++v+p+ ++++          e++++ ++  ++ + ++d vi+++ 
  MMETSP0890-20130614|7227_1 336 IIVAPNAEFSSdavtfpqvlgENLDYFDQPQSRTIVNVDSVICCIG 381
                 4588887777733333333333333334444566999999999985 PP

>> PF06039.10  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.3e-05      0.01     198     247 ..      99     147 ..      82     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
  PF06039.10 198 vevkykhevkdlkrnsdgkWevkvkdlktgekekvkakfvfiGagGaalk 247
                  ++k+  +v++ +r++dg W++  kd+ktg++++++++f+ i +g ++++
  MMETSP0890-20130614|7227_1  99 EKIKFGTSVEQCTRTEDG-WNIIAKDVKTGNETNYTCDFLTICTGSNSVP 147
                 5799**************.************************9998875 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.023        18       2      41 ..      16      56 ..      15      59 .. 0.90
   2 !    8.6   0.0     0.001      0.79     222     286 ..      97     168 ..      58     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.023
                ---HHHHHHHH---EEEEEESSS-------EEE---...-E CS
  PF01593.19  2 aGLaAArqLlqaGfdVtvlEArdrvGGRirtfrskg.dgyl 41
                +GL++ ++ l++G +V+ +E +  vGG  +t +s++ dg +
  MMETSP0890-20130614|7227_1 16 SGLCCIKEHLENGSEVICFEKSHVVGGVFSTLKSSSyDGLY 56
                8999999999********************99999888876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.001
                 EGTTEETTEEEEEEEEETSCEEEEEECSS.....EEEESE.EEE-S-HHHCCC.SEEES-EEHHHHHHHHHS CS
  PF01593.19 222 dggvvrlnkrVksitkegdgvtvttedgr.....tykaDa.VvvTlplgvlkk.ilflPplpdakqeairrl 286
                 +++++++++ V++ t+++dg +++++d +      y++D+  ++T + +v k   +  P++ ++k   i+  
  MMETSP0890-20130614|7227_1  97 LREKIKFGTSVEQCTRTEDGWNIIAKDVKtgnetNYTCDFlTICTGSNSVPKDiSKIAPGFMREKIHSIQFQ 168
                 2359**************8888888888888888******************99777777777777766654 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.8e-05     0.022       2      38 ..       8      46 ..       7      57 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-05
                EEEE-------HHHHHHHCHTT-EEEE-SS-CCGS..GG CS
  PF00890.19  2 vvViGsGlAGlaAAleaaeaglkvavvekeqetgg..at 38
                v V+G+G++Gl++  e  e+g +v++ ek +++gg  +t
  MMETSP0890-20130614|7227_1  8 VCVVGAGASGLCCIKEHLENGSEVICFEKSHVVGGvfST 46
                78******************************9997544 PP

>> PF13333.1  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.4     1e+03      24      39 ..      81      97 ..      78     109 .. 0.62
   2 ?   13.3   0.0   7.9e-05      0.06      25      44 ..     240     259 ..     233     260 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 1.4
   PF13333.1 24 kaaieeYieyY.nnkRL 39
                k++  eY+++Y  + +L
  MMETSP0890-20130614|7227_1 81 KEEYAEYLNLYaDHFKL 97
                56678999999744443 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.9e-05
   PF13333.1  25 aaieeYieyYnnkRLkglsP 44 
                  +i +Y+ey+n  R+++l P
  MMETSP0890-20130614|7227_1 240 LKIADYLEYFNANRIHNLNP 259
                 689*************9988 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.4e-05     0.025       2      50 ..       8      56 ..       7     115 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.4e-05
   PF12831.2  2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglvatddgnk 50
                v+VvG+g++G+++      +G +v+  e++ v+GG++++   +++dg +
  MMETSP0890-20130614|7227_1  8 VCVVGAGASGLCCIKEHLENGSEVICFEKSHVVGGVFSTLKSSSYDGLY 56
                9************************************998888888877 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.078        59      10      36 ..       3      29 ..       1      34 [. 0.78
   2 ?    8.7   0.0    0.0021       1.6       8      28 ..     171     191 ..     164     201 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.078
                ..--EEEEE----HHHHHGGG--TTT- CS
  PF01488.15 10 lkgkkvlviGAGemarlvakhLlekgv 36
                +++k+v+v+GAG  +   +k  le+g 
  MMETSP0890-20130614|7227_1  3 MSKKTVCVVGAGASGLCCIKEHLENGS 29
                6899********998888776666665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0021
                 ....--EEEEE----HHHHHG CS
  PF01488.15   8 eslkgkkvlviGAGemarlva 28 
                   +k+k+v+viGAGe a  +a
  MMETSP0890-20130614|7227_1 171 TPYKDKTVIVIGAGESASDIA 191
                 4699***********998876 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.16       2      35 ..       8      41 ..       7      74 .. 0.90
   2 ?   -0.5   0.0      0.53     4e+02     163     203 ..     100     145 ..      81     191 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00021
                EEEE----HHHHHHHHHHHTT-EEEEEESSSTTS CS
  PF01266.19  2 vviiGgGivGlstAyeLarrglkVtllekgdias 35
                v+++G+G++Gl++  e  + g +V+ +ek+ + +
  MMETSP0890-20130614|7227_1  8 VCVVGAGASGLCCIKEHLENGSEVICFEKSHVVG 41
                89***************************95433 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.53
                 EEEESEEEEEEEEETTC....EE.EEEEES..EEEEEEEE----TH CS
  PF01266.19 163 eiiegtkVtglereggr....vsgvetedgs.iradkvvlAaGaws 203
                 +i +gt V++  r +++     + v+t +++ +++d + +++G +s
  MMETSP0890-20130614|7227_1 100 KIKFGTSVEQCTRTEDGwniiAKDVKTGNETnYTCDFLTICTGSNS 145
                 5778999999999999966665667777777688899988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:01.23
# Mc/sec: 997.51
//
Query:       MMETSP0890-20130614|7228_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-23   82.9   0.0    2.9e-23   82.0   0.0    1.4  1  PF04981.8  NMD3 family
     0.0087   15.5   0.1      0.032   13.6   0.1    1.8  2  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.028   14.3   3.0       0.13   12.1   0.3    2.6  2  PF10217.4  Uncharacterized conserved protein (DUF2039)
       0.03   14.0   0.6       0.03   14.0   0.4    3.0  3  PF12773.2  Double zinc ribbon
      0.061   13.1   1.0        0.2   11.4   0.7    1.9  1  PF01927.11 Protein of unknown function DUF82


Domain annotation for each model (and alignments):
>> PF04981.8  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.1e-26   2.9e-23       1     234 [.      28     302 ..      28     304 .. 0.78

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 1.1e-26
   PF04981.8   1 CvrCGkeieklieg..lCedClleev......dlve.vpeelevevCkkCgaylqg.kkWvda..eskelleillkkvekel................kkalkvlvdaefvetephskrikvkvtvqge...vrgntpleqevevevrverqqCprCsria........ggyyeaivQvRqkerklteeekevahkiteeyleqlilkgdahafiskikekkeGlDfyfgsknaArklveflks..elggk.vkeskklvgedkk.gkkvyrltysv 234
                 C+ CG+++++  +g  lC++Cl +        + v+  p+ l++  C++C++++ g ++W +   es ell +ll++v++ l                ++    l+da+ ++tephs r++v+v+++ e   +r+    + ++e+e+  er++C++C+  +        ++ ++a +QvR + r+   +  e++ +  e+ l  ++++ + + +   ++++++G+D+ f+++n+A+k++++lk+  +++ k v e++kl ++d   ++ +++ t +v
  MMETSP0890-20130614|7228_1  28 CPDCGAPTKARADGsvLCSNCLQQADwraplqEHVKqYPKLLSFARCTQCERVHSGgHSWDNMdhESSELLGFLLRRVKRILlgkralaaiegmsralDSGTLNLEDARLIYTEPHSLRVRVEVVMKYEpgiARSTPGTRHKCELEFIEERKLCNQCAGETpkkmgktgKDDFAAKIQVRVR-RSDGGHGGERTLRALEDSLRLTSAS-KTATSARTVSRNHNGFDVEFAHRNDAQKFLNELKRlgRAPLKfVDETRKLLTHDAYsNTSDFQRTTLV 302
                 ***********99778******985322211133333666679*************9***99999*************8888************99994444468*********************976221455667899****************854422222334678**********.4444444444555555555444444.6777778899**********************998334565536899*******99998888877766 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.5   1.4e+03     130     166 ..      45      78 ..      31      82 .. 0.81
   2 !   13.6   0.1   1.2e-05     0.032      96     187 ..     229     320 ..     216     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.5
                 HCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHH CS
  PF00561.15 130 vtdflkrfdansyaregetraldgkllaalgrdlvwd 166
                 +++ l+++d++++ +  e++++++kll +++r+ +++
  MMETSP0890-20130614|7228_1  45 CSNCLQQADWRAPLQ--EHVKQYPKLL-SFARCTQCE 78 
                 566678889999999..9999999999.999998886 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.2e-05
                 HHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHH..HHHHHHT.ECCHCCHCCECHCHHHHHHHHHCCHHHT-TSSEEEEECCTTS CS
  PF00561.15  96 ltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfd..ansyare.getraldgkllaalgrdlvwdvtetlktilvptlvisgtdDp 187
                 + ++a + ++++ ++++ +++ ++  ++  +r++  +fl++ +   +++ ++ +etr+l +++ +++  d +  +  +l +i++  lvi +t ++
  MMETSP0890-20130614|7228_1 229 RLTSA-SKTATSARTVSRNHNGFD--VEFAHRNDAQKFLNELKrlGRAPLKFvDETRKLLTHDAYSNTSDFQRTTLVWLPPIDKHDLVIFATTTN 320
                 44444.44555999**********..999999999******9999**********************************************9876 PP

>> PF10217.4  Uncharacterized conserved protein (DUF2039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   4.9e-05      0.13      30      63 ..      42      79 ..      23      85 .. 0.83
   2 ?    1.6   0.1     0.093   2.5e+02      58      79 ..     167     186 ..     148     197 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.9e-05
   PF10217.4 30 tslCerCkekieWkv....kygKYkalkeekkCnkCee 63
                + lC++C ++ +W+     + ++Y +l + ++C++Ce+
  MMETSP0890-20130614|7228_1 42 SVLCSNCLQQADWRAplqeHVKQYPKLLSFARCTQCER 79
                568**********973332467899999********86 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.093
   PF10217.4  58 CnkCeektvkkaYhsiCdkCak 79 
                  +kCe   +++  +++C++Ca 
  MMETSP0890-20130614|7228_1 167 RHKCELEFIEE--RKLCNQCAG 186
                 45555555554..566666664 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   1.1e-05      0.03      14      40 ..      27      53 ..      19      61 .. 0.84
   2 ?   -0.4   0.0      0.33     9e+02      31      37 ..      73      79 ..      64      86 .. 0.72
   3 ?    3.1   0.3     0.027        75       4      21 ..     170     187 ..     168     199 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   PF12773.2 14 fCpqCgaklkeataeevlCpsCgesvs 40
                 Cp Cga+ k+  + +vlC++C ++++
  MMETSP0890-20130614|7228_1 27 LCPDCGAPTKARADGSVLCSNCLQQAD 53
                6*********777779******99866 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.33
   PF12773.2 31 lCpsCge 37
                +C +C++
  MMETSP0890-20130614|7228_1 73 RCTQCER 79
                4777765 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.027
   PF12773.2   4 CgaenpsgarfCpqCgak 21 
                 C+ e  ++ + C+qC  +
  MMETSP0890-20130614|7228_1 170 CELEFIEERKLCNQCAGE 187
                 444444555555555544 PP

>> PF01927.11  Protein of unknown function DUF82
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   7.5e-05       0.2     110     144 ..      55      91 ..      18      93 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.5e-05
  PF01927.11 110 kervpekvyeeade..ftrCtkCrkvyWkGshwerie 144
                 +  ++e+v+++ +   f rCt+C++v  +G+ w+++ 
  MMETSP0890-20130614|7228_1  55 RAPLQEHVKQYPKLlsFARCTQCERVHSGGHSWDNMD 91 
                 3345555555544455******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.80
# Mc/sec: 1461.78
//
Query:       MMETSP0890-20130614|7230_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-45  153.1   0.0    9.9e-45  151.9   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
    8.9e-25   86.2   0.0    2.1e-24   85.0   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
     0.0002   21.1   0.0     0.0016   18.2   0.0    2.4  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.028   14.3   0.1       0.14   12.1   0.0    2.1  2  PF08141.7  Small acid-soluble spore protein H family


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   2.9e-48   9.9e-45       1     173 []     107     284 ..     107     284 .. 0.92

  Alignments for each domain:
  == domain 1    score: 151.9 bits;  conditional E-value: 2.9e-48
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT........SEEEEEESS-THHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr........lqvivlSATlpkdvkkl 173
                 t+iQ++aip +++g+dv++ aeTGsGKT+af++p+l +ll+     ++  ali+aPtreLa q++++++ +++  +lr+++i+ggv+l  +q+  l + +++v++Tpgrl+d+++++k  +l++ r++V+DEadr+ls +f+++l++il++l +  +        +  +++SAT++++v+kl
  MMETSP0890-20130614|7230_1 107 TAIQRAAIPVAMSGRDVIGLAETGSGKTGAFALPILHRLLDAP---KRLYALILAPTRELAYQIHESFEALGAGIGLRACCIVGGVDLV-QQAVALAKLPHVVIATPGRLVDHLQNTKGfSLKSTRCIVMDEADRMLSLDFEQELTTILEALPNDDDefndnnknRLAMLFSATMTSKVAKL 284
                 78*************************************9854...588**************************************88.899999899*****************99989999***************************8555335666676577*********999876 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   6.2e-28   2.1e-24       1      78 []     350     454 ..     350     454 .. 0.99

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 6.2e-28
                 HHHHH----EEEE-TTS-HHHHHHHHHHHHTTTS...........................SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   1 lllekkgikvailhgelpqnereeileqfnagks...........................kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 l+l++ gik+++lhg+++q +r++ l++f+a++                             vlvat+va+rG+d+p+v++V nfdlp    +y++r+GRt+Rag
  MMETSP0890-20130614|7230_1 350 LFLRNLGIKATCLHGQMSQPKRLAALNKFKAHRDnvatsnasnddasnddddnnpfdkrgcCVLVATDVASRGLDIPSVDLVLNFDLPAHGKEYVHRVGRTARAG 454
                 589****************************************************************************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.5e-07    0.0016      33     181 ..     128     276 ..     122     279 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.5e-07
  PF04851.10  33 aTGtGKTlvaas.liarlar.....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile...............fkkafllglTAT 181
                 +TG+GKT   a  ++ rl+       +l+l+p++el  q +e f+           +  a+   ++  +  + ++ ++    +k   ++++t  +l   l++          ++ ++l+   +i++DEa r+ + +  +e+ +               +k+   + ++AT
  MMETSP0890-20130614|7230_1 128 ETGSGKTGAFALpILHRLLDapkrlYALILAPTRELAYQIHESFE-----------ALGAGIGLRACCIVGGVDLVQQAVALAKLPHVVIATPGRLVDHLQN----------TKGFSLKSTRCIVMDEADRMLSLDFEQELTTilealpndddefndnNKNRLAMLFSAT 276
                 7******999962444555599999*******************2...........2333344456666677777777777778888888888888887774..........6777778888888888877766665444333444555555555544444444555555 PP

>> PF08141.7  Small acid-soluble spore protein H family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     4e-05      0.14      25      49 ..     494     517 ..     491     518 .. 0.89
   2 ?   -1.6   0.0      0.77   2.6e+03      23      38 ..     526     541 ..     524     541 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4e-05
   PF08141.7  25 VwIesvdedeetArvhlldnpeeeq 49 
                 V+I++v+e +++A+++l+ +++e+q
  MMETSP0890-20130614|7230_1 494 VHIDKVNEASRLATIQLR-DLQEKQ 517
                 9*****************.777765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.77
   PF08141.7  23 vpVwIesvdedeetAr 38 
                 +++ Ie +d+dee Ar
  MMETSP0890-20130614|7230_1 526 KSIGIEDYDDDEEGAR 541
                 7899*******99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       682  (0.049883); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:01.04
# Mc/sec: 1308.78
//
Query:       MMETSP0890-20130614|7231_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-31  109.1   0.0    2.1e-31  108.6   0.0    1.2  1  PF07727.9 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   1.5e-35   2.1e-31      87     243 ..       2     170 ..       1     172 [. 0.90

  Alignments for each domain:
  == domain 1    score: 108.6 bits;  conditional E-value: 1.5e-35
   PF07727.9  87 aFLngeleeevYvkqpeGfedkkk......enkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkefemkdlgelk..yfLgleier..keegillsqekyvkkllkkfkme..dakpvstpl 243
                 aFL+g ++++vY++ p+G+  ++       ++k  kL kslYgLkqap      l+++ll l+f  s++d+cl+++ +++ +i+++++VDD+li+++++e++ ++k+++k++f++k+lg l+  +fLg +i    +++ ++++ ++y+k+ l+  +++  +++pvstp+
  MMETSP0890-20130614|7231_1   2 AFLYGLIDDDVYISLPNGIYFPNIprppvsRKKYAKLLKSLYGLKQAPSIFRGVLHSFLLLLHFLPSDSDPCLYYRWTDTIFILLAVHVDDILIITNDQETLVDFKKKMKEKFSIKELGPLHnqEFLGSQIDYhqEDGILTVHCDRYIKESLEALGIDfsRSRPVSTPI 170
                 9*****************9988767777778999*************************************************************************************986337***88876436667899***********9887511667888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.91
# Mc/sec: 1169.21
//
Query:       MMETSP0890-20130614|7232_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-12   46.0   1.0    5.1e-11   42.4   0.3    2.5  3  PF00109.21 Beta-ketoacyl synthase, N-terminal domain
    9.3e-09   34.7   0.4    2.8e-06   26.7   0.2    2.4  2  PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
  ------ inclusion threshold ------
       0.11   11.8   0.2        1.2    8.4   0.1    2.2  2  PF03047.9  COMC family


Domain annotation for each model (and alignments):
>> PF00109.21  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.3   1.1e-14   5.1e-11     154     251 ..      63     168 ..      29     170 .. 0.75
   2 ?    0.5   0.0     0.068   3.1e+02     143     181 ..     221     260 ..     191     268 .. 0.73
   3 ?   -1.4   0.0      0.25   1.2e+03      15      75 ..     288     352 ..     286     355 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.1e-14
                 ---CCCHHTTTT-----BEEE-GGGHHHHHHHHH.HHHH----SEEEE-----....---HHHHHHHHCTT-S-ST....SGGGS--TTB--------.--EEEEE CS
  PF00109.21 154 sviagrisyalglrGpsvtvdtacsSslvalhaavqslregeadlalaGGvel....llspetfaafsaagllspd....grckafdpfadGfvlGEGvGavllkr 251
                  ++  ++++ +g+rGp++   +ac++   al  a +++ +g+++ +++ + +     +l p+  a+f a+g+ s         ++fd++ +G++lG G+ +++l+r
  MMETSP0890-20130614|7232_1  63 VLANSQLAQIIGARGPNLQTNAACAGTTQALGIAQDLITSGRCERVVVIAGDDatgdALLPWLGAGFNALGAASIApnvnRAVHPFDARRNGMILGAGACGLVLQR 168
                 55667999*******************99999999*********9888776651111678999********5554433534477788888********88888887 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.068
                 S-T.THHHHHS----CCCHHTTTT-----BEEE-GGGHH.H CS
  PF00109.21 143 vsp.yatgaalpsviagrisyalglrGpsvtvdtacsSs.l 181
                 ++  + +g  ++s+ia r  y+   +G   t+++ c++   
  MMETSP0890-20130614|7232_1 221 DYLfHRFGL-TRSIIARRGLYFSHETGTHATPSSSCAANeM 260
                 344467777.99************************98654 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.25
                 S-SS.HHHHHHHHH------E.CCH......HHHTT.-S--EE---SS.........S-GGGG-- CS
  PF00109.21  15 ggvg.peefwelllegrdais.efpadr.wdaselydpdsraageiysreggfld.iddfdaaff 75 
                  gvg  +++   ll++r +   ++pa+   da+   d +  +ag+++++++  +d + +f+a+f 
  MMETSP0890-20130614|7232_1 288 MGVGvEDALAAYLLSQRPVPVpPLPAETkLDANLPADLALPIAGTVRTQPRHDIDfALRFAAGFG 352
                 5666555666777777777777777777688888889999999*****99999999999999885 PP

>> PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   6.1e-10   2.8e-06       3      38 ..      82     117 ..      80     129 .. 0.92
   2 !    5.6   0.0    0.0025        11      38      68 ..     142     175 ..     130     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 6.1e-10
                 EE-TT---HHHHHHHHHHHH------EEEEE---GG CS
   PF08545.5   3 vnaaCsgfvyalsvAaaliesgaaknvLvvgaetls 38 
                  naaC+g ++al +A++li sg++++v+v++++ ++
  MMETSP0890-20130614|7232_1  82 TNAACAGTTQALGIAQDLITSGRCERVVVIAGDDAT 117
                 69******************************9765 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0025
                 GGGS-TT-.TTTTTT-------EEE--B..S--- CS
   PF08545.5  38 srildwkd.rstavlfGDGAgAvvleas..eeeg 68 
                 +r +++ d r++ +++G GA  +vl++    +++
  MMETSP0890-20130614|7232_1 142 NRAVHPFDaRRNGMILGAGACGLVLQRAvlPNPK 175
                 4545554559999************997665555 PP

>> PF03047.9  COMC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.073   3.3e+02      14      24 ..      64      74 ..      63      74 .. 0.86
   2 ?    8.4   0.1   0.00027       1.2       4      19 ..     268     283 ..     258     284 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.073
   PF03047.9 14 LtekeLqeIiG 24
                L + +L +IiG
  MMETSP0890-20130614|7232_1 64 LANSQLAQIIG 74
                6689******9 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00027
   PF03047.9   4 vkkeLeqFkeLtekeL 19 
                 +++ L+qF +L++k L
  MMETSP0890-20130614|7232_1 268 QPNDLKQFLILNTKAL 283
                 699***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:01.30
# Mc/sec: 669.14
//
Query:       MMETSP0890-20130614|7234_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.6   0.3    2.5e-12   46.6   0.2    1.5  1  PF13499.1  EF-hand domain pair
    8.7e-12   43.3   1.6    4.2e-07   28.6   0.4    2.6  2  PF00036.27 EF hand
    6.7e-10   37.9   0.5    0.00011   21.7   0.1    2.8  2  PF13405.1  EF-hand domain
    3.7e-08   32.7   0.3    9.6e-08   31.4   0.2    1.8  1  PF13833.1  EF-hand domain pair
    5.5e-06   25.3   0.6     0.0011   18.1   0.2    2.8  2  PF13202.1  EF hand
    1.4e-05   24.6  15.0    5.4e-05   22.7   2.0    2.8  2  PF01699.19 Sodium/calcium exchanger protein
     0.0021   17.9   0.0     0.0039   17.1   0.0    1.4  1  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
      0.014   14.9   0.0      0.047   13.3   0.0    1.9  1  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.2   1.5e-15   2.5e-12       5      66 .]     291     348 ..     276     348 .. 0.88

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.5e-15
   PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  F+++D d++++l++ eL r++  +++++s  e++ +    f  +D+++dG+lsf+Ef++ +
  MMETSP0890-20130614|7234_1 291 FFRKYDIDNSKTLSRSELGRVFADMNEPKSTAELESL----FSGFDSDKDGTLSFDEFCEGM 348
                 5*************************77666666666....******************987 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.5e-05     0.043       5      28 ..     291     314 ..     290     315 .. 0.92
   2 !   28.6   0.4   2.5e-10   4.2e-07       1      28 [.     323     350 ..     323     351 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.5e-05
                 HHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   5 aFkefDkDgdGkIsfeEfkealkk 28 
                 +F+++D D++ ++s +E+ +++++
  MMETSP0890-20130614|7234_1 291 FFRKYDIDNSKTLSRSELGRVFAD 314
                 5*****************999876 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 el+ +F+ fD D+dG++sf+Ef+e +k 
  MMETSP0890-20130614|7234_1 323 ELESLFSGFDSDKDGTLSFDEFCEGMKQ 350
                 78999*********************96 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.9e-05      0.05       5      27 ..     291     313 ..     289     316 .. 0.93
   2 !   21.7   0.1   6.3e-08   0.00011       1      28 [.     323     350 ..     323     360 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.9e-05
                 --GCC-------B---HHHHHHH CS
   PF13405.1   5 aFklfDkdgdGkidaeELrdaLr 27 
                 +F+++D d++ +++++EL++++ 
  MMETSP0890-20130614|7234_1 291 FFRKYDIDNSKTLSRSELGRVFA 313
                 7******************9975 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 6.3e-08
                 HHH---GCC-------B---HHHHHHH. CS
   PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrk 28 
                 el+++F  fD d+dG+++++E+   +++
  MMETSP0890-20130614|7234_1 323 ELESLFSGFDSDKDGTLSFDEFCEGMKQ 350
                 6899*******************99986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   5.6e-11   9.6e-08      18      53 ..     316     350 ..     292     351 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 5.6e-11
   PF13833.1  18 glkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                   +  s  e++ lf+ fD d+dG +sf+EFc+ ++ 
  MMETSP0890-20130614|7234_1 316 NEP-KSTAELESLFSGFDSDKDGTLSFDEFCEGMKQ 350
                 444.77889***********************9985 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.013        22       5      24 ..     292     311 ..     290     313 .. 0.89
   2 !   18.1   0.2   6.4e-07    0.0011       1      21 [.     324     344 ..     324     351 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.013
                 HHHH--S----B-HHHHHHH CS
   PF13202.1   5 FrafDlNgDGkIsreELkrl 24 
                 Fr++D +++ ++sr+EL r+
  MMETSP0890-20130614|7234_1 292 FRKYDIDNSKTLSRSELGRV 311
                 9********9*******884 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 6.4e-07
                 HHHHHHHH--S----B-HHHH CS
   PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                 l+++F+ fD ++DG++s++E+
  MMETSP0890-20130614|7234_1 324 LESLFSGFDSDKDGTLSFDEF 344
                 6788999*************9 PP

>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   3.0    0.0025       4.4      26      80 ..      30      86 ..       7     201 .. 0.79
   2 !   22.7   2.0   3.2e-08   5.4e-05       2      82 ..     464     547 ..     463     550 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0025
  PF01699.19 26 tvlgltllAlgtsapElissiiaalkg....agdlalgsivGSalfnlllviglcvlis 80
                +++g+++l++ + +p+ ++ +++ l+     + d+++g++ GS ++ ++  i+ c+ i+
  MMETSP0890-20130614|7234_1 30 KLVGAVILPILGAVPDGAIVLFSGLGPdaqtSLDVGVGALAGSTVMLIT--IPWCLAIY 86
                679***********************53344777788888887765444..44444333 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 3.2e-08
  PF01699.19   2 lislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkg...agdlalgsivGSalfnlllviglcvlispl 82 
                 ++ +++d + + +++++  +g++   +g+++ +l+t+  El++s+++alk+   ++ +a  +++G+a++n + ++ + ++++ +
  MMETSP0890-20130614|7234_1 464 VVLIFSDPITDVLTEVGTRTGINAFYIGFVVAPLVTNGSELLASYTFALKKtskSMIVAYEQLLGAAVMNNTYCLFIFIILIYA 547
                 67899*********************************************888799999***********99888777766655 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0039      56     112 ..     288     346 ..     237     347 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.3e-06
   PF10591.4  56 veWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWck 112
                 +   F + D ++ k ls+sEl  + a++   k  +  +++f+  D dkd+++s++E+c+
  MMETSP0890-20130614|7234_1 288 LTPFFRKYDIDNSKTLSRSELGRVFADMnePKSTAELESLFSGFDSDKDGTLSFDEFCE 346
                 455699****************999997332444456899*****************97 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-05     0.047      25      70 ..     302     349 ..     291     357 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-05
   PF12763.2  25 kltgdkvapvlknsk..leedklekiwdladidedgkldfeefciamr 70 
                 +l+ +++  v+ + +   ++ +le++++  d d+dg+l f+efc  m+
  MMETSP0890-20130614|7234_1 302 TLSRSELGRVFADMNepKSTAELESLFSGFDSDKDGTLSFDEFCEGMK 349
                 566666666665433114667899********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:00.85
# Mc/sec: 1556.22
//
Query:       MMETSP0890-20130614|7233_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-18   66.9   0.0    1.5e-17   63.2   0.0    2.3  1  PF03152.9  Ubiquitin fusion degradation protein UFD1
    3.2e-08   33.3   0.0    8.6e-08   32.0   0.0    1.7  1  PF00789.15 UBX domain
  ------ inclusion threshold ------
      0.021   14.3   0.0      0.049   13.1   0.0    1.6  1  PF02933.12 Cell division protein 48 (CDC48), domain 2


Domain annotation for each model (and alignments):
>> PF03152.9  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   3.2e-21   1.5e-17      14     174 ..      86     298 ..      76     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 3.2e-21
   PF03152.9  14 lak.eekeeiesGgkiilPpsaLdeLsklei....eypmlFelsne............................aakkvthcgVLEFiaeeGtiylpewmmenlgleegdl..........vevesvslp..kgkfvklqpqskdfld......is.npkavLetaLrnfstLtkgdvieieyndkkyelkivevkpanaisiietdlevdfa 174
                 +++ ++ + +++G++i lP+saL  L++l +      p+ Fel  +                             +k +t+++V EF a+eG+i lp   m  l   + ++          v+v++v+lp  +++ + l+p +  f+       i+ + k +Le +Lr +++Lt+gd ++++  +++ +l++ e+ p+ a+s+i tdle+++ 
  MMETSP0890-20130614|7233_1  86 ITElRAVPVASQGDRIELPESALIALEQLGAldeqGGPLFFELCLQdssldydietqqqdqeeeeedevqtnfyIRKDATYASVREFKANEGQIGLPPKTMLSLTRGNPEIasrlelgqvlVRVQYVKLPapNKSRAALRPLADGFFIhdqqdqIQiDLKRILEDELRLHAALTRGDWLAVDLDSHTVRLRVDELSPHAAMSVIHTDLEIELL 298
                 55556677889************99999766554359*****984445778888889999999***999999988999*********************777777777666777777777899999998622688999***99998742344454436899*************************************************986 PP

>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.9e-11   8.6e-08       4      78 ..     349     428 ..     347     430 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.9e-11
                 SSEEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTS.EEEEESSSTEEETSCC...SBCCCH.STSSSCEEEE CS
  PF00789.15   4 edvcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeep.FkLltsfPrrlltksd...ktlsea.gllpnstlvl 78 
                 ++++r+q+R+ DG+ ++    +s +  s+   vd h+ +++e    L++s+Prr++++++    tls++  +  + +l++
  MMETSP0890-20130614|7233_1 349 QKKIRIQVRFRDGTKIETALLESIPATSLTTLVDAHRPDALEAdWLLVSSYPRRTISRQElnsGTLSDVaHGATSLALLV 428
                 6799*************************************999***************99999****966666666665 PP

>> PF02933.12  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.049       4      59 ..     237     299 ..     236     305 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
                 THHHH.HHHHHH--.....-EE----EE-EE----EEEEEEEEEESS.SE.E--TTSEEEE-- CS
  PF02933.12   4 gdema.ylkrqFlg.....rpvskGdiivfeflgkeiklvVvstePsgpv.kitedTeielge 59 
                 +d+++ +lkr +++      +++ Gd ++++ ++++++l+V +++P  +  +i  d eiel++
  MMETSP0890-20130614|7233_1 237 QDQIQiDLKRILEDelrlhAALTRGDWLAVDLDSHTVRLRVDELSPHAAMsVIHTDLEIELLP 299
                 688888888888888888889**************************9554777777888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1605  (0.117393); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.18u 0.43s 00:00:01.61 Elapsed: 00:00:01.26
# Mc/sec: 1264.74
//
Query:       MMETSP0890-20130614|7236_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-31  106.4   2.7    7.7e-14   51.6   0.2    4.1  4  PF12796.2  Ankyrin repeats (3 copies)
    1.8e-30  103.0   6.2      3e-08   32.9   0.1    6.5  6  PF00023.25 Ankyrin repeat
    6.4e-26   90.1   8.6    3.7e-09   36.7   0.5    6.4  6  PF13637.1  Ankyrin repeats (many copies)
    1.7e-21   75.6  10.0    6.5e-07   29.2   1.0    6.6  6  PF13857.1  Ankyrin repeats (many copies)
    1.7e-20   70.9   8.9     0.0052   16.7   0.0    6.7  7  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
       0.11   11.5   7.1       0.18   10.8   4.9    1.3  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.2   3.4e-17   7.7e-14       6      89 .]     118     212 ..     113     212 .. 0.82
   2 !   28.9   0.0   4.1e-10   9.3e-07      22      76 ..     212     272 ..     209     273 .. 0.79
   3 !   36.9   0.0   1.3e-12     3e-09      17      78 ..     248     315 ..     245     320 .. 0.85
   4 ?    0.4   0.0      0.33   7.5e+02      54      68 ..     358     372 ..     324     381 .. 0.70

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 3.4e-17
   PF12796.2   6 engn.lelvklLlekgadvdl......get....pLhlAa.eagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                 e+ + +e+ +lLl++  +         +      +L +Aa e+g +e v+lLl +gad n  d+ g+tpLhl++  g++++++lLl +ga++n +d
  MMETSP0890-20130614|7236_1 118 ERRDiIEVRRLLLDSSEETKQiwihtqN-DeglnALQCAArERGGHELVELLLCHGADANRADALGRTPLHLCAFGGNAKTARLLLLAGANPNKKD 212
                 5544367778888866555555777652.14666*****945799************************************************987 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 4.1e-10
   PF12796.2  22 dvdlgetpLhlAaeagnleivklLle...agadv......nakdkegntpLhlAvrnghlelvk 76 
                 d+ +g tp h+Aa+  +l++++lL+    +          na+d  g+tpLh+A+ + h + +k
  MMETSP0890-20130614|7236_1 212 DFKRGATPAHYAAAFARLDMIRLLILasrQ---RddkglvNARDSLGRTPLHWAALSAHRPWAK 272
                 455599******************995541...33345559999***********998877665 PP

  == domain 3    score: 36.9 bits;  conditional E-value: 1.3e-12
   PF12796.2  17 lekgadvdlgetpLhlAaeagnl........eivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                 +++ +++   +tpLh+Aa + +         e+++lL+ +gad  a+d +gntp h A+r g ++ + +L
  MMETSP0890-20130614|7236_1 248 VNARDSLG--RTPLHWAALSAHRpwaklpsiEVARLLVMNGADSMARDTSGNTPAHTAARLGAHDFLSIL 315
                 55666666..*******97777666666666********************************9998877 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.33
   PF12796.2  54 akdkegntpLhlAvr 68 
                 a d++g tpL +Av 
  MMETSP0890-20130614|7236_1 358 AADNKGFTPLDIAVA 372
                 334678888888876 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.5e-06    0.0056       2      32 ..     148     179 ..     147     180 .. 0.87
   2 !   32.9   0.1   1.3e-11     3e-08       2      32 ..     182     212 ..     181     213 .. 0.97
   3 !   11.9   0.0     6e-05      0.14       2      22 ..     216     236 ..     215     243 .. 0.93
   4 !   26.1   0.0   1.9e-09   4.2e-06       2      32 ..     255     293 ..     254     294 .. 0.97
   5 !    7.9   0.0    0.0011       2.5       2      21 ..     296     315 ..     295     321 .. 0.92
   6 !    5.2   0.0    0.0081        18       2      12 ..     363     373 ..     362     379 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.5e-06
                 SCBHHHHHHHTT.HHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrg.nlevvklLlsqGAdlnaqd 32 
                 G  +L +Aa+   ++e v+lLl +GAd n  d
  MMETSP0890-20130614|7236_1 148 GLNALQCAARERgGHELVELLLCHGADANRAD 179
                 7788888998888**************99766 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.3e-11
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G+TPLHl+a+ gn++ ++lLl +GA++n +d
  MMETSP0890-20130614|7236_1 182 GRTPLHLCAFGGNAKTARLLLLAGANPNKKD 212
                 9***************************998 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 6e-05
                 SCBHHHHHHHTTHHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLl 22 
                 G TP H+Aa   +l++++lL+
  MMETSP0890-20130614|7236_1 216 GATPAHYAAAFARLDMIRLLI 236
                 89******************9 PP

  == domain 4    score: 26.1 bits;  conditional E-value: 1.9e-09
                 SCBHHHHHHHTT........HHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrg........nlevvklLlsqGAdlnaqd 32 
                 G+TPLH+Aal+         ++ev++lL+ +GAd  a+d
  MMETSP0890-20130614|7236_1 255 GRTPLHWAALSAhrpwaklpSIEVARLLVMNGADSMARD 293
                 9*********************************99998 PP

  == domain 5    score: 7.9 bits;  conditional E-value: 0.0011
                 SCBHHHHHHHTTHHHHHHHH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklL 21 
                 G+TP H Aa+ g ++ ++ L
  MMETSP0890-20130614|7236_1 296 GNTPAHTAARLGAHDFLSIL 315
                 9***********99998877 PP

  == domain 6    score: 5.2 bits;  conditional E-value: 0.0081
                 SCBHHHHHHHT CS
  PF00023.25   2 GfTPLHlAalr 12 
                 GfTPL +A+ r
  MMETSP0890-20130614|7236_1 363 GFTPLDIAVAR 373
                 9*******986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00076       1.7      18      43 ..     127     157 ..     109     162 .. 0.75
   2 !   36.7   0.5   1.6e-12   3.7e-09       2      54 .]     149     202 ..     148     203 .. 0.95
   3 !   26.3   0.1   3.1e-09     7e-06      12      54 .]     193     236 ..     192     236 .. 0.93
   4 !   28.2   0.1   7.4e-10   1.7e-06       3      43 ..     218     264 ..     216     271 .. 0.85
   5 !   20.0   0.0   2.8e-07   0.00064       1      46 [.     255     308 ..     255     318 .. 0.83
   6 !    7.2   0.0     0.003       6.9      20      44 ..     347     373 ..     345     379 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00076
   PF13637.1  18 klLlekgid.....inrtdesGntaLhiAal 43 
                 +lLl++  +     i+ ++++G +aL++Aa+
  MMETSP0890-20130614|7236_1 127 RLLLDSSEEtkqiwIHTQNDEGLNALQCAAR 157
                 566655555777789999***********93 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 1.6e-12
   PF13637.1   2 ltaLhyaai.sgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 l aL  aa+  g +elv+lLl +g+d nr d+ G+t+Lh++a +gn + ++lLl
  MMETSP0890-20130614|7236_1 149 LNALQCAAReRGGHELVELLLCHGADANRADALGRTPLHLCAFGGNAKTARLLL 202
                 6789999999******************************************97 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 3.1e-09
   PF13637.1  12 grlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                 g+ ++++lLl  g+++n++  ++G t+ h+Aa + ++++++lL+
  MMETSP0890-20130614|7236_1 193 GNAKTARLLLLAGANPNKKdFKRGATPAHYAAAFARLDMIRLLI 236
                 667899*************55**********************8 PP

  == domain 4    score: 28.2 bits;  conditional E-value: 7.4e-10
   PF13637.1   3 taLhyaaisgrlelvklLl.ekgid.....inrtdesGntaLhiAal 43 
                 t+ hyaa++ rl++++lL+ ++++      +n++d+ G+t+Lh Aal
  MMETSP0890-20130614|7236_1 218 TPAHYAAAFARLDMIRLLIlASRQRddkglVNARDSLGRTPLHWAAL 264
                 789*************99974455567777**************996 PP

  == domain 5    score: 20.0 bits;  conditional E-value: 2.8e-07
   PF13637.1   1 gltaLhyaai........sgrlelvklLlekgidinrtdesGntaLhiAalrgn 46 
                 g+t+Lh+aa            +e+++lL+ +g+d  ++d sGnt+ h Aa+ g 
  MMETSP0890-20130614|7236_1 255 GRTPLHWAALsahrpwakLPSIEVARLLVMNGADSMARDTSGNTPAHTAARLGA 308
                 69********87777666666999*****99***9999************8664 PP

  == domain 6    score: 7.2 bits;  conditional E-value: 0.003
   PF13637.1  20 Llekgid..inrtdesGntaLhiAalr 44 
                 L++k  +  +++ d++G+t+L+iA+ r
  MMETSP0890-20130614|7236_1 347 LIKKPSNflLHAADNKGFTPLDIAVAR 373
                 55554444244449**********975 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0047        11      23      56 .]     116     155 ..     111     155 .. 0.89
   2 !   29.2   1.0   2.9e-10   6.5e-07       4      56 .]     171     223 ..     167     223 .. 0.93
   3 !   20.0   0.1   2.3e-07   0.00053      15      56 .]     215     262 ..     213     262 .. 0.96
   4 !   22.9   0.1   2.8e-08   6.4e-05       6      56 .]     245     303 ..     240     303 .. 0.77
   5 !   14.2   0.0   1.5e-05     0.034       4      36 ..     285     316 ..     281     326 .. 0.85
   6 !    5.5   0.0    0.0082        19       7      25 ..     354     372 ..     347     384 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0047
   PF13857.1  23 AakggalevvrlLl......apgadlnlrdsdgltaldlA 56 
                 A+++ +   vr Ll       ++ ++++++ +gl+al++A
  MMETSP0890-20130614|7236_1 116 AVERRDIIEVRRLLldsseeTKQIWIHTQNDEGLNALQCA 155
                 78888888888888899999999***************98 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 2.9e-10
   PF13857.1   4 hgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldlA 56 
                 hg ad+n+ d  g+tpLhl a gg++  +rlLl +ga++n +d+    t+ ++A
  MMETSP0890-20130614|7236_1 171 HG-ADANRADALGRTPLHLCAFGGNAKTARLLLLAGANPNKKDFKRgATPAHYA 223
                 56.9*****************************************99***9998 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 2.3e-07
   PF13857.1  15 ggntpLhlAakggalevvrlLl......apgadlnlrdsdgltaldlA 56 
                 +g tp h+Aa   +l+++rlL+      +     n+rds g+t+l++A
  MMETSP0890-20130614|7236_1 215 RGATPAHYAAAFARLDMIRLLIlasrqrDDKGLVNARDSLGRTPLHWA 262
                 578******************************************998 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 2.8e-08
   PF13857.1   6 padvnatdeggntpLhlAak.ggal.......evvrlLlapgadlnlrdsdgltaldlA 56 
                    vna+d  g+tpLh+Aa  ++++       ev+rlL+++gad  +rd++g+t+ + A
  MMETSP0890-20130614|7236_1 245 KGLVNARDSLGRTPLHWAALsAHRPwaklpsiEVARLLVMNGADSMARDTSGNTPAHTA 303
                 5689**************994443222222227788888****************9887 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 1.5e-05
   PF13857.1   4 hgpadvnatdeggntpLhlAakggalevvrlLl 36 
                 +g ad +a+d++gntp h+Aa+ ga +++ +L+
  MMETSP0890-20130614|7236_1 285 NG-ADSMARDTSGNTPAHTAARLGAHDFLSILF 316
                 45.89999**************99999999988 PP

  == domain 6    score: 5.5 bits;  conditional E-value: 0.0082
   PF13857.1   7 advnatdeggntpLhlAak 25 
                   ++a d++g+tpL +A+ 
  MMETSP0890-20130614|7236_1 354 FLLHAADNKGFTPLDIAVA 372
                 5567778888888888876 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.3e-06     0.021       2      29 ..     148     176 ..     147     177 .. 0.93
   2 !   15.3   0.0   6.9e-06     0.016       2      30 .]     182     210 ..     181     210 .. 0.97
   3 !   11.4   0.0   0.00012      0.28       2      22 ..     216     236 ..     215     239 .. 0.93
   4 !   16.7   0.0   2.3e-06    0.0052       2      27 ..     255     288 ..     254     290 .. 0.91
   5 !   10.7   0.0   0.00021      0.47       2      21 ..     296     315 ..     295     320 .. 0.92
   6 ?   -2.9   0.0       4.9   1.1e+04       5      12 ..     354     361 ..     353     362 .. 0.76
   7 ?    0.7   0.0      0.34   7.7e+02       2      11 ..     363     372 ..     361     379 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.3e-06
   PF13606.1   2 GnTpLhlAas.ngrielveaLlengadin 29 
                 G ++L +Aa+ +g  elve+Ll +gad n
  MMETSP0890-20130614|7236_1 148 GLNALQCAAReRGGHELVELLLCHGADAN 176
                 889*******8899*************87 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 6.9e-06
   PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                 G+TpLhl a  g+ + +++Ll +ga++n+
  MMETSP0890-20130614|7236_1 182 GRTPLHLCAFGGNAKTARLLLLAGANPNK 210
                 9**************************96 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00012
   PF13606.1   2 GnTpLhlAasngrielveaLl 22 
                 G Tp h+Aa + r++++++L+
  MMETSP0890-20130614|7236_1 216 GATPAHYAAAFARLDMIRLLI 236
                 679*****************8 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 2.3e-06
   PF13606.1   2 GnTpLhlAasngr........ielveaLlengad 27 
                 G+TpLh+Aa + +        ie++++L+ ngad
  MMETSP0890-20130614|7236_1 255 GRTPLHWAALSAHrpwaklpsIEVARLLVMNGAD 288
                 9*********998788888889**********98 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 0.00021
   PF13606.1   2 GnTpLhlAasngrielveaL 21 
                 GnTp h+Aa+ g  +++++L
  MMETSP0890-20130614|7236_1 296 GNTPAHTAARLGAHDFLSIL 315
                 9***************9997 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 4.9
   PF13606.1   5 pLhlAasn 12 
                 +L +Aa n
  MMETSP0890-20130614|7236_1 354 FLLHAADN 361
                 68899987 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.34
   PF13606.1   2 GnTpLhlAas 11 
                 G TpL++A+ 
  MMETSP0890-20130614|7236_1 363 GFTPLDIAVA 372
                 89*****964 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.9   7.7e-05      0.18     213     261 ..      59     110 ..      38     128 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.7e-05
  PF01056.13 213 rtspn.sssssgedseseeeeeeeee..eeeeeeiDvvtvekrrsssrekes 261
                 +++p+ +  ssg  se+ee+e+e+ee  eeeeeei+ +  +k+  +s+e+++
  MMETSP0890-20130614|7236_1  59 EAGPSsTIPSSGTRSEEEESEDEKEEktEEEEEEINDIQSKKKDLESEEDAD 110
                 4444423445666666655555544412567788888887776666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1031  (0.0754096); expected 273.4 (0.02)
Passed bias filter:                      517  (0.0378145); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.44s 00:00:01.40 Elapsed: 00:00:01.15
# Mc/sec: 886.24
//
Query:       MMETSP0890-20130614|7235_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-14   51.9   0.0    1.6e-13   50.2   0.0    2.0  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
     0.0041   15.6   0.8      0.019   13.4   0.5    2.0  2  PF09972.4  Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
      0.016   14.8   0.3      0.032   13.9   0.2    1.4  1  PF04932.10 O-Antigen ligase
      0.046   13.3   0.1        0.1   12.2   0.0    1.5  1  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
      0.047   13.1   0.8      0.086   12.3   0.6    1.4  1  PF11754.3  Velvet factor
      0.073   13.0   1.0       0.17   11.8   0.7    1.5  1  PF09858.4  Predicted membrane protein (DUF2085)
       0.16   11.9   0.7       0.32   10.9   0.5    1.4  1  PF10953.3  Protein of unknown function (DUF2754)
       0.32   10.9   3.4        0.6   10.0   2.3    1.3  1  PF13425.1  O-antigen ligase like membrane protein
        1.3    9.0   5.2          2    8.5   0.7    2.5  2  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.1   6.2e+03      10      18 ..     146     154 ..     144     161 .. 0.80
   2 !   50.2   0.0     1e-16   1.6e-13       6     109 ..     408     508 ..     403     510 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4.1
                 HHHHHHHHH CS
  PF02518.21  10 vselvdNav 18 
                 +s+l+dNa 
  MMETSP0890-20130614|7235_1 146 ISNLIDNAH 154
                 789999986 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 1e-16
                 HHHHHHHHHHHHHHHHHHHSEEEEE.EEEECTCEEEEEEE-----THHHHHHHCSTTTCCSCSSGGGTT----THHHHHHCCEEEEEEEE.ECTCT-CEEEEEEEE CS
  PF02518.21   6 lrqivselvdNavkateesgeievr.vkreegelvieVeDnGiGipeedlervfepffqtdddsrkvggtGlGlsivkklvellggeiev.eskeggGttvtlrlp 109
                 l +i ++l++Na kat+  g ie+  +++ +g+l++ V+D+G G++++ +  +f+ +   +    +  g GlGl +++ +++ lgg++ + +s++++G+++++ lp
  MMETSP0890-20130614|7235_1 408 LSHIANNLLSNARKATNY-GLIEFIlLEERDGYLEFAVRDTGLGMSPKLQAMLFHGGAGMA----EERGVGLGLESCRVFARVLGGDVYLyKSEPNHGSEFRFILP 508
                 899***************.999865156667****************99999999666555....59999*****************77516777********998 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   1.2e-05     0.019     378     454 ..      16      92 ..       8     105 .. 0.68
   2 ?   -1.0   0.0      0.29   4.3e+02     177     208 ..     496     527 ..     488     535 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   PF09972.4 378 earkkglfdeyrylrsnekkl...gllilgilllilsfiliifllalfaglllaalvllvivlvigliialll.lrkllga 454
                 + + ++ ++e   +r+         +++++ +++++ fil+  + ++++++ + ++++++++++i+  ++l++ +r+++++
  MMETSP0890-20130614|7235_1  16 KEDVENMRKEAILKRR----RctyYASFAIGMIVLFLFILVGLIKKVKKNTEVYYFAVMAFIICIIDAFFLFIfQRQVMRQ 92 
                 3333333333333333....14445778888888888888888899***************99999988888735555544 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.29
   PF09972.4 177 pageglevhvlfPkgaltppnaneesenllke 208
                 ++++g e+++++P + ++  n+n+     l++
  MMETSP0890-20130614|7235_1 496 EPNHGSEFRFILPGSVVSIENDNISPRPCLQK 527
                 79************999999998877766666 PP

>> PF04932.10  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   2.1e-05     0.032      19     101 ..      40     183 ..      32     189 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.1e-05
  PF04932.10  19 iigvlvalivlillfyknlikrwllkliiviiliilfviitfaflkldk.........................................................vfklidnkivtlidgstknsedlqtd....ssRgyiwk 101
                  ig++v+++++++ ++k+ +k++ + + +v++ ii ++ ++f f+  ++                                                           +lidn+   +++  t+ ++d+q +     s +  w+
  MMETSP0890-20130614|7235_1  40 AIGMIVLFLFILVGLIKKVKKNTEVYYFAVMAFIICIIDAFFLFIFQRQvmrqskrsdltavaryaqldvlgiscltidahthnilkankaafqtfqadqciigthISNLIDNAHELVSNSHTQDTQDTQEKknslLSKLPSWS 183
                 589999999999999999999987777766666666666444444444434444455555555555555555544444445455444444555555555588888777888888888888777777777766666655555555 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.6e-05       0.1      65     117 ..      29      82 ..       7     106 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.6e-05
   PF13903.1  65 ldltrvvivflllglvlillaavlallaslkksktlllltgvllllagi.lill 117
                 +  + ++++ +++g+++ +l ++++l++ +kk+  +++++++++++  i +++l
  MMETSP0890-20130614|7235_1  29 KRRRCTYYASFAIGMIVLFLFILVGLIKKVKKNTEVYYFAVMAFIICIIdAFFL 82 
                 4445566778999*********************88888877777544432222 PP

>> PF11754.3  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   5.7e-05     0.086      59     148 ..     181     277 ..     133     302 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.7e-05
   PF11754.3  59 llvdLvnargkaevrvv.kesaesssistaseekatgsltrlLtGt...lva.saarlkdpdnkeavfFvfsDLSvrteGtyrLkf..sLvevgkee 148
                    +L++++++++++ + ++ +++++ ++ +++k+   + +  tG    lva s+   +d+d+ e +f vf D+S   e +y+L++  +L++   +e
  MMETSP0890-20130614|7235_1 181 SWSQLLQHSPTEKDSSQfENDQDEMKEHKPQHNKQMIISASTNTGRklkLVAySTQIVQDTDDIEKIFLVFHDVSQVLETSYKLEVqqKLMNQFAHE 277
                 33344444433333222022222222223333333333444445531113432577788999999*******************8733577766655 PP

>> PF09858.4  Predicted membrane protein (DUF2085)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   0.00011      0.17      24      69 ..      37      85 ..      28      99 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
   PF09858.4 24 tgiylglll..glilfalgr.vklkplsllllllllipmaiDgftqlig 69
                 ++ +g+++  ++il+ l++ vk ++  ++++++++i+++iD+f   i 
  MMETSP0890-20130614|7235_1 37 ASFAIGMIVlfLFILVGLIKkVKKNTEVYYFAVMAFIICIIDAFFLFIF 85
                3555666664444555555545555666778899*********987666 PP

>> PF10953.3  Protein of unknown function (DUF2754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00021      0.32       6      57 ..      29      81 ..      24      94 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00021
   PF10953.3  6 kirrdwhyyavalGlifi.lnGvvGllGfeakGwqtyavGlvtwvisfwiaGl 57
                k rr  +y ++a+G+i + l  +vGl+    k  + y   +++++i++  a +
  MMETSP0890-20130614|7235_1 29 KRRRCTYYASFAIGMIVLfLFILVGLIKKVKKNTEVYYFAVMAFIICIIDAFF 81
                44566666679***9965267789****99****************9876654 PP

>> PF13425.1  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3   0.00039       0.6      22      84 ..      41     107 ..      33     115 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00039
   PF13425.1  22 tallallvvllvlllelkkkkk...llll..lailvviallvlglrfsriesdsevndsslsgRlell 84 
                 +++++l++++lv l+ +k kk    ++++  ++i+++i +++l+++++ +  +s+ +d +   R+ +l
  MMETSP0890-20130614|7235_1  41 IGMIVLFLFILVGLI-KKVKKNtevYYFAvmAFIICIIDAFFLFIFQRQVMRQSKRSDLTAVARYAQL 107
                 234444444444444.3333337773333224445555555666677777667777788888887776 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.7    0.0013         2      17     100 ..     100     212 ..      96     231 .. 0.70
   2 ?    1.6   0.2      0.18   2.7e+02      60     124 ..     247     325 ..     229     331 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0013
                 HHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS....-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT..........................S CS
  PF00004.24  17 avakelgvefleisgsellskyvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk..........................e 100
                 ava+ ++ ++l is+ ++   +  +  k  ++ f++ ++ +    +++  +iD++++l++++++++++++++  n Ll++l   ++                           +
  MMETSP0890-20130614|7235_1 100 AVARYAQLDVLGISCLTID-AHTHNILKANKAAFQTFQADQciigTHISNLIDNAHELVSNSHTQDTQDTQEKKNSLLSKLPSWSQLlqhsptekdssqfendqdemkehkpqH 212
                 7888888888888888888.5555555666666776666664453334449***********99999***********999887777666666666666666666666666663 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.18
                 EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT.................S.TEEEEEE-SSGGGS-HHHHHTTS CS
  PF00004.24  60 silfiDEidalaksrsgseseeeervvnqLlteldgvkkk.................eskvivigatnrpdkldpallrgRf 124
                 + l++ ++ ++ +++   + e++++++nq+ +el +  +                  + ++ v++ t + d+ d+ ++  R+
  MMETSP0890-20130614|7235_1 247 IFLVFHDVSQVLETS--YKLEVQQKLMNQFAHELRNKISGafevlqswyenphedneDFRTRVLASTAELDEADQLIR-TRL 325
                 555666666666666..4555666666666666665555577778888888888877556788999999999998888.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1413  (0.10335); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:01.12
# Mc/sec: 1450.65
//
Query:       MMETSP0890-20130614|7239_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-20   71.6   0.5    7.8e-20   70.5   0.0    1.7  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.24   3.3e+03      39      53 ..      15      29 ..      13      30 .. 0.85
   2 !   70.5   0.0   5.7e-24   7.8e-20       3      94 .]      33     122 ..      31     122 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.24
                CCTTSS-HHHHHHHT CS
  PF00254.23 39 vGsgqvikgleegle 53
                vG+g vi ++++ +e
  MMETSP0890-20130614|7239_1 15 VGDGGVIVKWKKRVE 29
                899****99998775 PP

  == domain 2    score: 70.5 bits;  conditional E-value: 5.7e-24
                 B---CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   3 kkakegdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                 + +  gdt++v y+g+++  g++fd + + + +fef++G+ +v++g+e g+ +++ Ge++ lti  +++Yg++g  g +ip+na l+f+vel+
  MMETSP0890-20130614|7239_1  33 E-PRHGDTLQVRYVGTIQkTGREFDRT-HGGYSFEFQLGAAKVVRGFELGIAKLRIGEEAILTIRGDYGYGKEGS-GNDIPKNAILIFQVELV 122
                 4.899************988*******.8999******************************************9.889************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.52
# Mc/sec: 880.20
//
Query:       MMETSP0890-20130614|7237_1  [L=1171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-09   36.8   0.0    6.4e-09   35.5   0.0    1.8  1  PF03828.14 Cid1 family poly A polymerase
    0.00017   21.0   0.2    0.00056   19.3   0.1    1.8  1  PF10620.4  Phosphoribosyl-dephospho-CoA transferase MdcG
     0.0015   18.6   0.0     0.0042   17.2   0.0    1.7  1  PF01909.18 Nucleotidyltransferase domain


Domain annotation for each model (and alignments):
>> PF03828.14  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.4e-12   6.4e-09       3      60 .]    1092    1155 ..    1090    1155 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.4e-12
                  --HHHHHHHH--------SEEB-------EEGGG-GGG-......S-.S-SSS--BB----TTS CS
  PF03828.14    3 geLLigFFeyYgseFdyenvvisirtggilskkekgwes......nkernrfllaIeDPfeldn 60  
                  g LL+gF+++Y+++Fd ++++is+ +   + + e g         ++ +   +l++eDP+ + n
  MMETSP0890-20130614|7237_1 1092 GALLLGFLDFYAHRFDPRKTGISVGRRCFFARAELGTAPrhavnhRGSFHFDPLYVEDPLSPGN 1155
                  78**********************99999*******99999**9989999*********98865 PP

>> PF10620.4  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.2e-07   0.00056      88     152 ..     887     949 ..     877     957 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.2e-07
   PF10620.4  88 laLaaalpaaplaalaalaalealadal..glalgvyGSvafqlatglpylhasSDLDLliraasas 152
                 +++++++++++ a++aa ++++  a+al   +++ +yGS    ++t+l  + asSDLDL+ir +++ 
  MMETSP0890-20130614|7237_1 887 EQVSRRQRSRESAWRAARERVRDVARALwpRARVEPYGS----CVTRLSLADASSDLDLVIRLPRVR 949
                 67888899999999999999977778878999*******....68*****************99876 PP

>> PF01909.18  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.1e-07    0.0042       2      43 ..     905     948 ..     904     995 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9.1e-07
                 HHHHHHHHCT-TTSEEEEE-ETTTT---TT..-EEEEEEEESTT CS
  PF01909.18   2 skllerlkelygvakvvlfGSyarGtllpg..SDiDllvvlpkp 43 
                 ++++++ + l++ a+v  +GS+++ + l +  SD+Dl++ lp+ 
  MMETSP0890-20130614|7237_1 905 ERVRDVARALWPRARVEPYGSCVTRLSLADasSDLDLVIRLPRV 948
                 5899999*****************99999999*******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.60u 0.48s 00:00:02.08 Elapsed: 00:00:01.14
# Mc/sec: 2440.12
//
Query:       MMETSP0890-20130614|7240_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-92  309.9   0.1      2e-92  309.6   0.1    1.1  1  PF00501.23 AMP-binding enzyme
    6.5e-27   92.9   0.1    1.3e-26   91.9   0.1    1.4  1  PF11930.3  Domain of unknown function (DUF3448)
    4.6e-13   48.2   0.1    8.4e-13   47.4   0.1    1.5  1  PF13193.1  Domain of unknown function (DUF4009)


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.6   0.1   4.4e-96     2e-92       1     417 [.     102     538 ..     102     539 .. 0.97

  Alignments for each domain:
  == domain 1    score: 309.6 bits;  conditional E-value: 4.4e-96
                 EHHHHHHHHHHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTT.ECC........S-E.ECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-..TTCCHHCTTTHHHHTTT-EEEEESSCCT.T-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC..CCTTTTT--EEEE-----THHHHHHHHHHTT...SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT.-BEE-S----EEEES..TTS--B-TT-HHHHHHHBCCSTT.EEE---EEEE-TT--EEEE--GGGEEE----EEEHHHHHHHHHTSTTEEEEE CS
  PF00501.23   1 TYreldervnrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilndseakvlitddelltklleaaskelakekliivr.tdk........eed.svgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllp..lhfdgsilellaplllGatvvlvspedl.kdpalllddiekykvtvlalvptvlelllkaiek..kkldlsslrlilsggeplspellerlreafg..girivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeeg.kevppgevGEllirg..pgvakGYlkdpeltaeafdedgw.lyrTGDlgrldedGyleiiGRkkdqikirGeniepgeiEsallehpgvaeaa 417
                 +Y e+    +r+a++L++ G  +gd V i++p+ pe+  a+lac+++G +++++++ ++a  l++++ ds +k ++t+d  ++  + ++ ke+++ ++  ++  +k        e +  + ++++l+++e+l+k  ++ p++ +d++d+++ +yTSG+TGkPKGV ++ +++l ++a ++++ ++  +++++ +++   +++g+ + +++pl + a  v+++  ++ +dp++++d+++++ v++++++pt++++l+++ e+  kk++ +slr++ ++gep++pe+++++ e +g  ++ iv+++++tEt+g+v++ lpg + +kpgs+  p+ gv+  ++d ++ +++  ++ G l i+   pg  +  ++d+ +  ++++     +y TGD  r+d dGy++i+GR++d+++++G++i ++e+Esa  +hp+va+aa
  MMETSP0890-20130614|7240_1 102 SYNEMMHGTCRIANALKSTGAIQGDFVTIYMPMIPETAQAMLACARLGTPHTVVFAGFTASSLRDRIIDSASKWVLTSDVGKRGGKTIKLKEITDAAVAQCPlVQKvfvfkrtgE-EvPYNQNQDLKMDELLPKMRPYIPAVATDAEDVLFTLYTSGSTGKPKGVAHSTAGYLLQAAMTCKYSFDLRSSDIFACVAdvGWITGHSYIVYGPLSNAASSVMFESVPTyPDPGRYWDLVDRHSVSIFYTAPTAIRALMAHGEAhvKKYSRQSLRVLGTVGEPINPEAWRWYFEVVGdkRCSIVDTFWQTETGGHVMTPLPGVTPMKPGSCCLPFFGVQPSVLDSQSgEQLSGECDGVLAITKswPGACRTVWGDHSRFMKTYLLPYPpYYFTGDGCRRDQDGYYWITGRVDDVLNTSGHRIGTAEVESACVAHPAVAQAA 538
                 799********************************************************************************************99999998555799998644.269************************************************************999999999999999999***************************************************************************************************************************************************9999999*******999******************9866669***************************************************8 PP

>> PF11930.3  Domain of unknown function (DUF3448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.1   2.8e-30   1.3e-26       5      82 .]      14      95 ..       9      95 .. 0.93

  Alignments for each domain:
  == domain 1    score: 91.9 bits;  conditional E-value: 2.8e-30
   PF11930.3  5 eeykelyeesied..peaFWaeqA.eeldWfkpftkvldd.snapfikWFegGklNvsynclDrhlekrgdkvAiiwegdep 82
                +ey+++ye+si++   ++FW++ A + ++W++p++kv++   +  +++WF gGklNv++nc+D+hl+++g+k+Aiiwegdep
  MMETSP0890-20130614|7240_1 14 AEYQAMYERSINEdtADEFWDSEAkKFIEWIRPYDKVKSGgFSTGDHAWFIGGKLNVCANCIDKHLAENGEKAAIIWEGDEP 95
                79*********8744679******99*************99778999*********************************97 PP

>> PF13193.1  Domain of unknown function (DUF4009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   1.8e-16   8.4e-13       3      41 .]     584     626 ..     582     626 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.8e-16
   PF13193.1   3 vPreveFVdeLPKTrSGKIlRRlLRaial.ge...gdpstled 41 
                 +P+     + LPKTrSGKI+RR+LR++a  +e   gd++tl d
  MMETSP0890-20130614|7240_1 584 TPDLLLPIPGLPKTRSGKIMRRVLRKVAAaEEdqlGDITTLAD 626
                 5555566789****************9996779*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.92
# Mc/sec: 1677.45
//
Query:       MMETSP0890-20130614|7245_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.0   3.8         20    4.6   0.0    5.0  5  PF09811.4 Essential protein Yae1, N terminal
       0.34   10.5  10.3        1.6    8.3   0.6    3.9  4  PF04210.8 Tetrahydromethanopterin S-methyltransferase, subunit G
        2.3    7.7  21.9       0.77    9.3   2.4    3.2  3  PF13436.1 Glycine-zipper containing OmpA-like membrane domain
        9.6    5.8  29.0        8.7    5.9   5.4    4.0  2  PF13488.1 Glycine zipper


Domain annotation for each model (and alignments):
>> PF09811.4  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0098        33      24      38 ..      39      53 ..      36      54 .. 0.88
   2 ?    1.5   0.2     0.056   1.9e+02      15      35 ..      62      82 ..      51      86 .. 0.48
   3 ?    4.6   0.0    0.0059        20      17      37 ..      84     104 ..      83     109 .. 0.64
   4 ?    1.6   0.0     0.055   1.9e+02      19      37 ..     114     132 ..     108     137 .. 0.66
   5 ?    0.1   0.0      0.15   5.3e+02      24      33 ..     139     148 ..     131     150 .] 0.65

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0098
   PF09811.4 24 eGaqlGlelGeleGi 38
                 G+++G ++G++eG 
  MMETSP0890-20130614|7245_1 39 VGVEVGSDVGCVEGT 53
                599*********995 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.056
   PF09811.4 15 qeGfdeGfqeGaqlGlelGel 35
                +eG  eG   G+ +G ++G +
  MMETSP0890-20130614|7245_1 62 VEGIAEGDIVGSPVGSDVGSI 82
                444333333444555555544 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0059
   PF09811.4  17 GfdeGfqeGaqlGlelGeleG 37 
                 G d G++ G+ +G ++G l G
  MMETSP0890-20130614|7245_1  84 GSDVGRRVGYSVGTDVGTLVG 104
                 556666666666666665544 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.055
   PF09811.4  19 deGfqeGaqlGlelGeleG 37 
                 + G ++G  lG ++G l G
  MMETSP0890-20130614|7245_1 114 NVGIEDGTPLGNDVGTLVG 132
                 4566666677777776655 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.15
   PF09811.4  24 eGaqlGlelG 33 
                  G+++G+++G
  MMETSP0890-20130614|7245_1 139 VGVTVGQDVG 148
                 4666666666 PP

>> PF04210.8  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.064   2.2e+02      39      56 ..      39      56 ..      37      57 .. 0.86
   2 ?    0.4   0.1      0.14   4.8e+02      39      54 ..      71      86 ..      69      89 .. 0.65
   3 ?    8.3   0.6   0.00048       1.6      31      56 ..      83     108 ..      77     110 .. 0.87
   4 ?    4.7   0.2    0.0063        22      37      56 ..     129     148 ..     118     150 .] 0.72

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.064
   PF04210.8 39 iGkkvGRDiGiLYGlviG 56
                +G  vG D+G + G  +G
  MMETSP0890-20130614|7245_1 39 VGVEVGSDVGCVEGTSVG 56
                6889******99998777 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.14
   PF04210.8 39 iGkkvGRDiGiLYGlv 54
                +G  vG D+G + G  
  MMETSP0890-20130614|7245_1 71 VGSPVGSDVGSIVGSD 86
                5677788887766654 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00048
   PF04210.8  31 vngEvaqriGkkvGRDiGiLYGlviG 56 
                 v ++v  r+G  vG D+G L G  +G
  MMETSP0890-20130614|7245_1  83 VGSDVGRRVGYSVGTDVGTLVGESVG 108
                 5678999*************998887 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0063
   PF04210.8  37 qriGkkvGRDiGiLYGlviG 56 
                   +G  vG D+G+  G  +G
  MMETSP0890-20130614|7245_1 129 TLVGEAVGTDVGVTVGQDVG 148
                 56788888888887776555 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   5.1     0.025        84      71      99 ..      34      63 ..       2      80 .. 0.52
   2 ?    9.3   2.4   0.00023      0.77      53      93 ..      66     109 ..      61     120 .. 0.66
   3 ?    3.8   4.2     0.011        38      53      96 ..      98     140 ..      91     150 .] 0.73

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.025
   PF13436.1 71 gg.agagaaiGAaaGllvGaaaGagagqas 99
                g+    g+ +G  +G + G+++G+++g  +
  MMETSP0890-20130614|7245_1 34 GNgVIVGVEVGSDVGCVEGTSVGSEEGGVE 63
                432233344444444444444444444332 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00023
   PF13436.1  53 aegaavGaavGAaagaaagg...agagaaiGAaaGllvGaaaGa 93 
                 aeg +vG  vG  +g+++g+   +  g  +G  +G+lvG ++G 
  MMETSP0890-20130614|7245_1  66 AEGDIVGSPVGSDVGSIVGSdvgRRVGYSVGTDVGTLVGESVGC 109
                 56667777777777777776333366777777777777777765 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
   PF13436.1  53 aegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagag 96 
                  +g++vG  vG   g  +g  ++g+  G  +G+lvG a+G+  g
  MMETSP0890-20130614|7245_1  98 DVGTLVGESVGCPEGGNVGI-EDGTPLGNDVGTLVGEAVGTDVG 140
                 45667777777766666666.88888899999999999998765 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5  12.8         4   1.4e+04       5      39 ..      75     108 ..      16     109 .. 0.85
   2 ?    5.9   5.4    0.0026       8.7       2      41 ..      92     146 ..      91     149 .. 0.68

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 4
   PF13488.1   5 iGAaaGAaiGaaaggagkGAliGAavGaaaGaliG 39 
                 +G  +G ++G+ +g + +G  +G+ vG+++G  +G
  MMETSP0890-20130614|7245_1  75 VGSDVGSIVGSDVG-RRVGYSVGTDVGTLVGESVG 108
                 55557777777776.45888888888888887776 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0026
   PF13488.1   2 GaaiGAaaGAaiGaaag...............gagkGAliGAavGaaaGaliGay 41 
                 G  +G  +G ++G  +g               g ++G+l+G avG+ +G  +G+ 
  MMETSP0890-20130614|7245_1  92 GYSVGTDVGTLVGESVGcpeggnvgiedgtplGNDVGTLVGEAVGTDVGVTVGQD 146
                 556666677777766654444444466655554499*******999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      107  (0.00782621); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 499.24
//
Query:       MMETSP0890-20130614|7244_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.7e-110  367.4   6.1   7.2e-110  367.0   4.2    1.1  1  PF00478.20 IMP dehydrogenase / GMP reductase domain
    3.1e-05   23.2   3.0      0.052   12.6   0.5    2.3  2  PF01884.12 PcrB family
    0.00026   19.8   1.7    0.00046   19.0   1.2    1.3  1  PF01070.13 FMN-dependent dehydrogenase
     0.0094   14.8   0.9      0.025   13.4   0.1    1.9  2  PF04131.9  Putative N-acetylmannosamine-6-phosphate epimerase
  ------ inclusion threshold ------
      0.055   13.6   0.2       0.11   12.6   0.1    1.5  1  PF14360.1  PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PF00478.20  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.0   4.2  2.6e-113  7.2e-110       2     345 ..      27     361 ..      26     366 .. 0.92

  Alignments for each domain:
  == domain 1    score: 367.0 bits;  conditional E-value: 2.6e-113
                 B--GGGEEEE---B-TTSGGGG-BEE....EESSSSCEESSSEEE-SSTTT-SHHHHHHHHH----B-B-SSS-HHHHHHHHHHHHTC-TT--B-TTS-B--EEEE-SSTTHHHHHHHHHH..----EEEE------BHHHHHHHHHHHHHSTTSEEEE-E--SHHHHHHHHH----SEEE------GCCHHHHC-----HHHHHHHHHHHHTTCC-EEEE-----SHHHHHHHHH----EEEE--TTTTSTTSSS-EEE.----EEEEE-----TTTH--..TTGGGG-----S-SS-----EEEE----HHHHHHHHHHHHHHHHHH----BHHHHHHHHEEEEBCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00478.20   2 gltfddvlllPkkstvlksrsevdls....tkltkkiklkiPlvsaaMdtVtesemAialAreggigvihknlsieeqaeevkkvkksypnaskdeekrllvgaavgtreedlerveaLve..agvdviviDsahghsesviemikkikeklpeleviaGNvvtaeaaeeLieagadavkvGiGpGsiCtTrevagvGvpqltAvlevaeaakklgvpviaDGGirnsgdiakAlaaGAsavMlGsllAgteespgelil.kngkklkeyrGmgSleAmek.kgskdryfqeeekklvaegvegavpykGsvkkvieqllgglrssmgyvGakslkelrekakfvrvtsagl 345
                 +l+f+dvl++Pk+st lksr+ev+l+    +k + ++   +P+v+a+MdtV ++emA+a+A+ g ++ ihk+++++e++  v+k     p   + + ++++++a  gt ++dle+++a+++   ++++i++D+a+g+se ++e+++ +++++p+++++aGNvvt+e++eeLi  gad+vkvGiGpGs+CtTr+++gvG+pq++Av+e+a+aa+ lg  viaDGGi+++gd akA++aGA+++M+G+l +gt+es+g++i+  +g k+k ++Gm+S +Am+k +g  ++y ++       eg   +v+ykG+v++vi++llgglrss++yvGa s+ke+ ++++fvrvt++ +
  MMETSP0890-20130614|7244_1  27 KLDFKDVLIRPKRST-LKSRAEVSLErrfvMKHSGQTMRCVPVVVANMDTVGTFEMAVAMAEYGSLVAIHKHYTVDEWQIFVQKY----P---QVAANNVMISA--GTGKSDLEKLDAILSvcPEIKTICLDVANGYSEFFVETVSAVRKRWPQHTIVAGNVVTNEMTEELILKGADIVKVGIGPGSVCTTRKQTGVGYPQVSAVIECADAAHGLGGFVIADGGITCPGDAAKAFGAGADMIMVGGLVSGTDESAGQVITqPDGTKIKLFYGMSSSTAMTKhTGGVAEYRSS-------EGKTVQVKYKGPVSNVIKDLLGGLRSSCTYVGALSIKEVPKRTTFVRVTQQLN 361
                 58*************.**********88866666889999**********************************77777776653....3...33445666666..66777799999998733699*************************************************************************************************************************************978*******************99******333.......4445569******************************************9865 PP

>> PF01884.12  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   8.4e-05      0.23     154     211 ..     142     198 ..     105     200 .. 0.86
   2 !   12.6   0.5   1.9e-05     0.052     185     218 ..     235     268 ..     210     277 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.4e-05
                 -SEEEEE-.------H.HHHHHHHCT-SSSEEEE-----SHHHHHHHHTT.-SEEEE- CS
  PF01884.12 154 lrlvYlEaGSGaledvpeevikvkkvledarlivGGGiksaEkAkelvkaGADvivvG 211
                 ++ + l+   G +e   e v +v+k+  + + iv G +  +E  +el+ +GAD++ vG
  MMETSP0890-20130614|7244_1 142 IKTICLDVANGYSEFFVETVSAVRKRWPQHT-IVAGNVVTNEMTEELILKGADIVKVG 198
                 5677788888999999899999999998776.567788999**************998 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.9e-05
                 EEE-----SHHHHHHHHTT.-SEEEE--HHHH-H CS
  PF01884.12 185 livGGGiksaEkAkelvkaGADvivvGnvveekk 218
                 +i  GGi  + +A++   aGAD+i+vG +v   +
  MMETSP0890-20130614|7244_1 235 VIADGGITCPGDAAKAFGAGADMIMVGGLVSGTD 268
                 6788************************998766 PP

>> PF01070.13  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.2   1.7e-07   0.00046     214     310 ..     158     262 ..     142     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.7e-07
                 HHHHHHH-------EEEE-.--SHHHHHHHHH------EE------S......-SS----GGGHHHHHHHH.T.SS--EE--------HHHHHHH----EEEE-- CS
  PF01070.13 214 wedlewlreetklplvlKG.vltaedakraveaGvdgivVSNHGGRq......lDgapatidvLpeivaav.gdklevlvDgGirrGsDvlkalAlGAdavlvGR 310
                 +e++  +r++++   ++ G v+t e  ++++ +G+d++ V    G           + + +++  e+++a+ g    v++DgGi    D +ka   GAd+++vG 
  MMETSP0890-20130614|7244_1 158 VETVSAVRKRWPQHTIVAGnVVTNEMTEELILKGADIVKVGIGPGSVcttrkqTGVGYPQVSAVIECADAAhGLGGFVIADGGITCPGDAAKAFGAGADMIMVGG 262
                 56788899999888777776899999999999999999997666643222222566677888888888866466689***************************7 PP

>> PF04131.9  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.2   5.5e+02     147     173 ..     172     198 ..     157     211 .. 0.83
   2 !   13.4   0.1   9.1e-06     0.025     145     177 ..     233     265 ..     207     277 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.2
   PF04131.9 147 viaeGrintPekakkaieiGvdavvvG 173
                 +i+ G + t e  ++ i  G+d v vG
  MMETSP0890-20130614|7244_1 172 TIVAGNVVTNEMTEELILKGADIVKVG 198
                 788899999999999999999999998 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.1e-06
   PF04131.9 145 lkviaeGrintPekakkaieiGvdavvvGsait 177
                  +via+G i  P  a+ka+  G+d+++vG+ + 
  MMETSP0890-20130614|7244_1 233 GFVIADGGITCPGDAAKAFGAGADMIMVGGLVS 265
                 479**************************9876 PP

>> PF14360.1  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.1e-05      0.11      31      57 ..      75     101 ..      53     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-05
   PF14360.1  31 llkvillllslvgvfliiasreHYtvD 57 
                 ++ ++ + ++++ +  ++a ++HYtvD
  MMETSP0890-20130614|7244_1  75 TVGTFEMAVAMAEYGSLVAIHKHYTVD 101
                 37899999******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:01.39
# Mc/sec: 668.91
//
Query:       MMETSP0890-20130614|7243_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-29  101.5   3.8    1.2e-28  100.0   2.6    1.7  1  PF00566.13 Rab-GTPase-TBC domain
  ------ inclusion threshold ------
        0.1   12.1   0.1       0.32   10.5   0.0    1.8  2  PF09288.5  Fungal ubiquitin-associated domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   2.6   1.7e-32   1.2e-28       2     206 ..      19     297 ..      18     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 1.7e-32
  PF00566.13   2 elRgevWklllgykp.................................kvkrlksseekqeeskkqksklekeedskeesqIkkDvpRtfp..edelfkneegqnqLeriLkayaiynpeigYcqGmnfiaallL................lvvldeee...............afwcfvsLlnkklrdlfkpslpg...lqrdlqileellkkhdpelykhlek.....eeldlslfaikWfltlfvrelpletvlrlwDlfl..ega.....kflllrialail 206
                 elR+ +W+ +lg+ +                                 + +++++++ +++  ++ +++ + ++ ++  +qIk D++R++p   d++f  +  q+ ++++L+++ i np++gY qGm++++a+lL                       +               ++w+f  ++++ ++ + +++l++   +++  +i   ll  +d+el+ hl +       + +++++++W+   f r+l++++++ lwD+f+  + +      +  l  ++++l
  MMETSP0890-20130614|7243_1  19 ELRSIAWRMFLGVLEsspntwvvtiqkqreeyeqmrdrgfdrfskksqNPNEEENDDFIERGTSFAEEEDDLAAFEDAADQIKGDLERCYPegADAYFLAKARQKLMFNVLLIWTIENPNLGYRQGMHELLAPLLytmeqgleidkdllpnE------SplkalitdqhylehdTYWLFAMMIQQFIPLYDTTRLQDslaVSTCRKIQTALLAGVDQELARHLASfgigkDAVIPQVYMLSWLRVAFGRQLSIQDTISLWDFFFatQ-QnkgplLLEWLEACAVLL 297
                 789999999999988999999999999999999999999999988887777777888888999999999999999999*************7666****************************************66555555555555550......0555555555556667*********77777777777777865555556*******************99999888899*************************777442.234445222355555544 PP

>> PF09288.5  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.47   3.2e+03      32      47 ..      60      75 ..      48      77 .. 0.66
   2 ?   10.5   0.0   4.6e-05      0.32       3      27 ..     222     246 ..     220     253 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.47
                H----S--SS--HHHH CS
   PF09288.5 32 rLgiksldpednetan 47
                r   ks +p+++e+++
  MMETSP0890-20130614|7243_1 60 RFSKKSQNPNEEENDD 75
                4445676666666665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 4.6e-05
                 SS-----HHHHHHHHH----HHHHH CS
   PF09288.5   3 aqlyGidrdlVdefvsqGFekdkvi 27 
                 a l+G+d++l   ++s G +kd vi
  MMETSP0890-20130614|7243_1 222 ALLAGVDQELARHLASFGIGKDAVI 246
                 789********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:00.94
# Mc/sec: 1157.39
//
Query:       MMETSP0890-20130614|7246_1  [L=930]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-25   88.7   0.6    1.4e-24   86.7   0.1    2.2  2  PF10239.4  Protein of unknown function (DUF2465)
    2.9e-09   36.4   9.1    5.4e-09   35.5   6.3    1.5  1  PF13639.1  Ring finger domain
    2.4e-07   30.3   6.2    4.4e-07   29.5   4.3    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00043   19.7   3.9      0.001   18.5   2.7    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    0.00098   18.6   5.9     0.0019   17.7   4.1    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.011   15.2   1.2       0.04   13.3   0.9    2.0  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
      0.012   15.3   3.9      0.029   14.2   2.7    1.6  1  PF11793.3  FANCL C-terminal domain
      0.043   13.8   0.1       0.18   11.8   0.0    2.1  1  PF12886.2  Transducer of regulated CREB activity, C terminus
       0.19   11.7   6.4       0.54   10.3   4.4    1.8  1  PF12678.2  RING-H2 zinc finger


Domain annotation for each model (and alignments):
>> PF10239.4  Protein of unknown function (DUF2465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   3.7e+03     172     195 ..      65      88 ..      60      98 .. 0.82
   2 !   86.7   0.1   9.3e-28   1.4e-24     180     317 ..     764     902 ..     687     903 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.4
   PF10239.4 172 pekhlskpllkkelteeqweklek 195
                  ++++ +pl +k+l+ eq +kl++
  MMETSP0890-20130614|7246_1  65 SSQRFVNPLTRKPLSLEQCAKLDE 88 
                 6788899***********999986 PP

  == domain 2    score: 86.7 bits;  conditional E-value: 9.3e-28
   PF10239.4 180 llkkelteeqweklekinkeLekeYelRrrmllkRlDvTvqsFkWsdrakekedeiaavyqpkrkeldk.kkevdladllaaredlariektssgs.irektkcainkvliGrvpdrGGrpneiepPppemPswqkrqeg 317
                 +++ +   +  + l++in++L +++e+Rr mllkR+DvT+qsF W d ak +e +i+a+ +++r++l k  +++++ d la  ++ ++ ++t   + +      ai+k liG+vp rGG +++        P w++rq+g
  MMETSP0890-20130614|7246_1 764 AMNSHEAIQNRAALDQINAALCADFEVRRAMLLKRCDVTIQSFLWGDAAKGQESDIVAAIEAMRHSLRKqPASITVDDALALSRNGLEALQTRLNEkSLLIADDAIKKTLIGEVPHRGGNAKQGGRK-SAGPAWTERQSG 902
                 4444445556688******************************************************997799********98888777777655414556789*****************865444.678999999986 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   6.3   3.6e-12   5.4e-09       1      45 [.     458     520 ..     458     521 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.6e-12
   PF13639.1   1 deCaiCldelsegeevvrlpCgHvfHeeCldewlrs...sn................sCPlCrk 45 
                 deC+iCl+    +e+ v+l+CgH +H+eCl  w r+   ++                 CP Cr+
  MMETSP0890-20130614|7246_1 458 DECPICLCAW-GSEDTVTLQCGHKYHSECLGNWHRMvveHQppedthlrfehvlqttICPSCRQ 520
                 69********.68********************643222224556666677777777******8 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   4.3   2.9e-10   4.4e-07       3      46 .]     458     520 ..     456     520 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 2.9e-10
   PF13923.1   3 fsCpiCleel.enpviltpCgHlyCkkCieqwleks....kkk...............CPiCrn 46 
                 ++CpiCl+ + ++ +++++CgH y+++C+ +w +                        CP Cr+
  MMETSP0890-20130614|7246_1 458 DECPICLCAWgSEDTVTLQCGHKYHSECLGNWHRMVvehqP-PedthlrfehvlqttiCPSCRQ 520
                 79********6335688***********9999777554551.1455666666777778****96 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.7   6.6e-07     0.001       1      32 [.     460     492 ..     460     518 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.6e-07
                 -TTTSSS-SSEE..BSCTS-EE-CHHHHHHHCS CS
  PF00097.20   1 CpiCleeakepn.elleCkHsfCskCirkilks 32 
                 CpiCl+ +  ++  +l+C+H+++s+C+ ++ + 
  MMETSP0890-20130614|7246_1 460 CPICLCAWGSEDtVTLQCGHKYHSECLGNWHRM 492
                 ******997666569**************9875 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   4.1   1.2e-06    0.0019       3      45 ..     458     520 ..     456     523 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.2e-06
   PF13920.1   3 ktCvvCler..eadvlllpCgHlclCeeCaerllk...................rkkkCpiCrs 45 
                 ++C++Cl     +d++ l+CgH    +eC  ++++                   ++  Cp Cr+
  MMETSP0890-20130614|7246_1 458 DECPICLCAwgSEDTVTLQCGHK-YHSECLGNWHRmvvehqppedthlrfehvlQTTICPSCRQ 520
                 79***99965599**********.*********99****************************8 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   2.6e-05      0.04      13      45 ..     460     491 ..     451     520 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.6e-05
                 -TTT-S.-SS....EEEES---EEEHHHHHHHHH CS
   PF13445.1  13 Cpiske.qsteqnpPvvLpCGhvisrealeklak 45 
                 Cpi+    ++  ++ v+L+CGh +  e+l ++ +
  MMETSP0890-20130614|7246_1 460 CPICLCaWGS--EDTVTLQCGHKYHSECLGNWHR 491
                 ******8877..8899*************99876 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.7   1.9e-05     0.029       3      46 ..     458     495 ..     456     525 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-05
                 -S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH- CS
   PF11793.3   3 veCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslke 46 
                  eC+iC++   ++++v+       +C++k+H++CL +W r + e
  MMETSP0890-20130614|7246_1 458 DECPICLCAWGSEDTVTL------QCGHKYHSECLGNWHRMVVE 495
                 79*******998999885......7*************998755 PP

>> PF12886.2  Transducer of regulated CREB activity, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.18       9      69 ..     809     870 ..     799     873 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
   PF12886.2   9 gdsspslskdlasalagvpeveldadtlfslddeLrldplsLdgLqm.LsdpdavlaDpavE 69 
                 gd  ++   d+ +a+  +      + + +++dd L l +  L++Lq  L+++++++aD a+ 
  MMETSP0890-20130614|7246_1 809 GDAAKGQESDIVAAIEAMRHSLRKQPASITVDDALALSRNGLEALQTrLNEKSLLIADDAIK 870
                 67777888899*******9988888899*****************85599**********96 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.4   0.00036      0.54      16      66 ..     454     491 ..     438     519 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00036
   PF12678.2  16 disednCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlk 66 
                 +   d+C iC ++           g s+++  +  +CgH++H +C+ +W +
  MMETSP0890-20130614|7246_1 454 QSTADECPICLCAW----------G-SEDTVTL--QCGHKYHSECLGNWHR 491
                 44567788888887..........4.3443333..6**********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.31u 0.40s 00:00:01.71 Elapsed: 00:00:01.58
# Mc/sec: 1410.51
//
Query:       MMETSP0890-20130614|7248_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.4   0.3      0.024   14.3   0.2    1.5  1  PF12186.3 Acyl-CoA dehydrogenase C terminal


Domain annotation for each model (and alignments):
>> PF12186.3  Acyl-CoA dehydrogenase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.8e-06     0.024      15      59 ..     128     172 ..     119     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-06
                 S---GGGHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH CS
   PF12186.3  15 ievspeleplkdrlkkladkfeaavkkvkEakdqellDfvARrlv 59 
                 +  s+ l++ + +l  l ++f +av+  +E kd  ++D+ AR l 
  MMETSP0890-20130614|7248_1 128 TASSQTLAAAQRELSMLESRFIEAVNRSTESKDARMIDLEARFLH 172
                 556788999999******************************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1022  (0.0747513); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.93
# Mc/sec: 1290.94
//
Query:       MMETSP0890-20130614|7247_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-33  113.0   0.2    1.6e-16   59.5   0.0    2.4  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.3e-31  108.2   0.1    1.1e-15   57.2   0.0    2.3  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    3.7e-13   48.9   0.1    3.7e-06   26.5   0.0    2.3  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.3e-17   5.9e-14       1      69 [.     130     197 ..     130     198 .. 0.94
   2 !   59.5   0.0   3.5e-20   1.6e-16       1      61 [.     292     353 ..     292     360 .. 0.92

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 1.3e-17
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                 lf g++++ ++e++L  +F+ +G + ++ ++r+ +tg s+gfafV+F++  +++++l    +++l+gr++
  MMETSP0890-20130614|7247_1 130 LFLGGISWQTDENQLHSYFGAYGNVIDVAVMRNkQTGVSRGFAFVTFANAASVDAVLT--VEHQLDGRRI 197
                 89*****************************************************998..6777777776 PP

  == domain 2    score: 59.5 bits;  conditional E-value: 3.5e-20
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTT CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealng 61 
                 lfVg+L p+vte + +e+Fs fG ++++ ++ d  t+rs+gf+fV+F +  + +++l+a ++
  MMETSP0890-20130614|7247_1 292 LFVGGLAPTVTEAQFREYFSSFGNVVDAVVMFDrATQRSRGFGFVTFSDDASIRAVLSATHE 353
                 8*****************************************************99996544 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   2.4e-19   1.1e-15       1      68 [.     130     197 ..     130     198 .. 0.97
   2 !   49.0   0.0   8.9e-17   4.1e-13       1      69 []     292     360 ..     292     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 2.4e-19
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                 l+++g++++++e +l   f+ yg+v +v ++rnk+ g +rgfAfv+f+++++++++l+  +++l+gr i
  MMETSP0890-20130614|7247_1 130 LFLGGISWQTDENQLHSYFGAYGNVIDVAVMRNKQtGVSRGFAFVTFANAASVDAVLTV-EHQLDGRRI 197
                 799*******************************************************9.999999988 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 8.9e-17
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 l+v+gl p+vte++ re fs++g+v +  ++ ++  +r+rgf+fv+f++ ++++++l +  + l+g++++
  MMETSP0890-20130614|7247_1 292 LFVGGLAPTVTEAQFREYFSSFGNVVDAVVMFDRAtQRSRGFGFVTFSDDASIRAVLSA-THELQGKYVE 360
                 79**********************999999999999*********************99.7888888885 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   8.1e-10   3.7e-06       1      53 [.     144     199 ..     144     202 .. 0.87
   2 !   20.2   0.0   7.4e-08   0.00034       2      43 ..     307     353 ..     306     361 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 8.1e-10
   PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                 L+ +f  +G+v+++ ++r+k     +g+Afv+f+++++ + +++   +++l+g+++ +
  MMETSP0890-20130614|7247_1 144 LHSYFGAYGNVIDVAVMRNKqtgvsRGFAFVTFANAASVDAVLT--VEHQLDGRRIDI 199
                 799*********************99***********9999996..456666666655 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 7.4e-08
   PF13893.1   2 yklfskfGkver.ikifrkk....ggqAfvefdtveaArkakeylng 43 
                 +++fs fG+v++ +++f+      +g++fv+f++ ++ r ++++ ++
  MMETSP0890-20130614|7247_1 307 REYFSSFGNVVDaVVMFDRAtqrsRGFGFVTFSDDASIRAVLSATHE 353
                 79*******87758888877**999*********9999999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.40s 00:00:01.23 Elapsed: 00:00:00.84
# Mc/sec: 1574.75
//
Query:       MMETSP0890-20130614|7250_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-06   27.0   0.0    7.1e-06   25.5   0.0    1.8  1  PF00085.15 Thioredoxin
     0.0016   18.5   4.6     0.0021   18.1   2.8    1.5  1  PF14182.1  YgaB-like protein
     0.0047   15.7   5.1     0.0061   15.3   3.6    1.1  1  PF02181.18 Formin Homology 2 Domain
  ------ inclusion threshold ------
       0.13   12.1  12.7       0.24   11.2   8.8    1.5  1  PF13863.1  Domain of unknown function (DUF4200)
        0.2   10.6   5.5       0.29   10.1   3.8    1.1  1  PF09592.5  Protein of unknown function (DUF2031)
       0.21   11.0   4.4       0.24   10.8   3.0    1.1  1  PF04156.9  IncA protein
       0.69    9.6   5.3        2.9    7.6   3.7    2.0  1  PF07061.6  Swi5
        1.2    9.3   7.5       0.52   10.4   3.5    1.7  2  PF00435.16 Spectrin repeat


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.2e-09   7.1e-06      36     103 ..       1      70 [.       1      71 [. 0.89

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.2e-09
                 HHHHHHHHHHHTT-..TSEEEEEETT.TTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHHH CS
  PF00085.15  36 laPeyeklaeelke..kvvlakvdvd.enkdlaseygvegiPtlklfkngkkveevegarekeklvaflkk 103
                 ++P +++l +e+++  +  +a vd+  + k l++  gv+g+Pt+k+       + +eg+r++++l++f k+
  MMETSP0890-20130614|7250_1   1 MKPAWDALMKEYEGheSKLVADVDCIgSGKPLCDAQGVKGFPTVKYGDP-ADLQAYEGGRDEKALKKFAKE 70 
                 78***********99888899****955699*************98766.6677*************9986 PP

>> PF14182.1  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   2.8   1.2e-06    0.0021      22      76 ..      80     134 ..      68     139 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.2e-06
   PF14182.1  22 elercqeiekellelekeaelesiqeeIsqkkkeLkeiqelFekQTeevIrsyks 76 
                 +l+ c + +k ++++ +  ++++++ +Is+k+ eLke++ +F+k  e + + y++
  MMETSP0890-20130614|7250_1  80 NLDLCDDDKKAEIQKFQAMDMKDLESQISTKEAELKEVEATFKKNVEGLQKQYEE 134
                 6999*****************************************9999999874 PP

>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.6   3.6e-06    0.0061     267     342 ..      90     159 ..      73     162 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.6e-06
                 TTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHCHHTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02181.18 267 snvekaakvdleelekdvkklekglkklekelekseekeeesdkfvekleefleeaeeklkkleeelkeakelfke 342
                 ++++k +++d+++le+++++ e +lk++e +++k+ e       + +++eef++e +ek ++++++   +++++k 
  MMETSP0890-20130614|7250_1  90 AEIQKFQAMDMKDLESQISTKEAELKEVEATFKKNVE------GLQKQYEEFMKEKDEKTQAIKDSGLGLMKSVKA 159
                 5799****************************99999......9*********************99999998876 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   8.8   0.00014      0.24       8      75 ..      99     166 ..      86     170 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
   PF13863.1   8 emeevqlaldakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekke 75 
                  m++++ ++ +k++e+++ e+++k++ e l+k+ ee+ +++ +  + +kd+    ++ +k+a++++ +
  MMETSP0890-20130614|7250_1  99 DMKDLESQISTKEAELKEVEATFKKNVEGLQKQYEEFMKEKDEKTQAIKDSGLGLMKSVKAAKAKADA 166
                 689999******************************************************99988765 PP

>> PF09592.5  Protein of unknown function (DUF2031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.8   0.00017      0.29      72     133 ..      83     144 ..      77     148 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00017
   PF09592.5  72 dyndddeeiiklrniidShikkhkenntlldlnnvdkktkklinelrkeleevkKeldnkrn 133
                  ++dd++  i+  +++d +  + + + +  +l++v+   kk +++l+k+ ee  Ke+d+k++
  MMETSP0890-20130614|7250_1  83 LCDDDKKAEIQKFQAMDMKDLESQISTKEAELKEVEATFKKNVEGLQKQYEEFMKEKDEKTQ 144
                 465555444444456666666788899999****************************9975 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.0   0.00014      0.24      74     145 ..      81     148 ..      63     171 .] 0.66

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
   PF04156.9  74 ieesrlqeelsesesqlsele.eeleqleerlaeleseledleedlellqeelksleerlesleesikelake 145
                 ++         + ++++++++   + +le++++++e+el+++e  ++++ e l++  e++ + +++  ++ k+
  MMETSP0890-20130614|7250_1  81 LDL-----CDDDKKAEIQKFQaMDMKDLESQISTKEAELKEVEATFKKNVEGLQKQYEEFMKEKDEKTQAIKD 148
                 555.....45677788888887889999999999999999999999999955555555554444444444444 PP

>> PF07061.6  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.7    0.0017       2.9       6      61 ..      97     156 ..      85     164 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0017
   PF07061.6   6 laslaelkaqaeqleseiaevkaelkedpektvkrhIklLheYNe....lKDigqgLlgl 61 
                  +++++l++q++ +e+e++ev+a  k++ e   k++ + ++e  e    +KD g+gL+  
  MMETSP0890-20130614|7250_1  97 AMDMKDLESQISTKEAELKEVEATFKKNVEGLQKQYEEFMKEKDEktqaIKDSGLGLMKS 156
                 344556666666666666666666677777777777777777666666688888888876 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         5   8.5e+03      89     103 ..       5      19 ..       4      21 .. 0.50
   2 ?   10.4   3.5   0.00031      0.52       3      63 ..      92     149 ..      90     171 .] 0.70

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHHH CS
  PF00435.16  89 WeeLlelaaerkqkL 103
                 W++L +  + ++ kL
  MMETSP0890-20130614|7250_1   5 WDALMKEYEGHESKL 19 
                 555555555544444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00031
                 HHHHHH.HHHHHHHHHHHHHHHHHCCCHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00435.16   3 lqqfaq.dadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervealnel 63 
                 +q+f+  d+++le+ i+ ke++l++ +      +v+ l+k+++++++e   ++e+ +a+++ 
  MMETSP0890-20130614|7250_1  92 IQKFQAmDMKDLESQISTKEAELKEVEA-TFKKNVEGLQKQYEEFMKE---KDEKTQAIKDS 149
                 67776548***************54444.7778999999999999887...44444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1396  (0.102106); expected 273.4 (0.02)
Passed bias filter:                      656  (0.0479813); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 611.61
//
Query:       MMETSP0890-20130614|7253_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-13   48.9   0.0    5.7e-13   48.5   0.0    1.2  1  PF00578.16 AhpC/TSA family
     0.0079   15.7   0.0      0.014   14.9   0.0    1.4  1  PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.017   14.5   0.0    1.2  1  PF08534.5  Redoxin
      0.064   12.8   0.0       0.14   11.7   0.0    1.5  2  PF03950.13 tRNA synthetases class I (E and Q), anti-codon binding domain


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.7e-16   5.7e-13       1     105 [.      42     160 ..      42     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.7e-16
  PF00578.16   1 vgdkapdfelkdtdgkkvslsdl.kgkpvvLffypkdfcpvCttelpalaelyeefk.kkgvevigvsvdspeshkkfaekne......lnfpllsDeegevakaygvlnee.......k 105
                 +gd +pdf +++t  ++++l+    g + +++++p  f  v+   l  la++ ee+  +++v  ++vs+d   s+++++++++      ++fp+++D + ++ k++g+++ +       +
  MMETSP0890-20130614|7253_1  42 IGDYIPDFVAQSTR-GEIDLHVAvDGAWSLVYICPRSFDAVASSDLATLAKMSEELStELKVRRFAVSCDALPSIERWKKDIQelldcvIDFPIIADLDAHIVKKFGLVRHDedacavrA 160
                 7999*******998.99***887799*****************************99788*************************************************99965555433 PP

>> PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     4e-06     0.014       1      40 []     199     239 ..     199     239 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4e-06
                 HHH---TSS-.B--TTT.T----BE---SSHHHHHHHHH-- CS
   PF10417.4   1 ALQladkhgv.atPAnWkPGdkvivpPppteeeavkryleg 40 
                 A+Ql+ +h+  at AnW  Gd+v+++   +  +a+  +++g
  MMETSP0890-20130614|7253_1 199 AIQLSYQHPLlATRANWMSGDDVFISSDISFTQAKTQFPKG 239
                 89******999**************9999999999988886 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.9e-06     0.017       2     107 ..      42     150 ..      41     176 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.9e-06
                 --------S-----TT---EEHHH.HTTSEEEEE---------IIIIIHHHHTH.HHH.HH----EEEEE-SS-HHHHHHHHH......TT.TSEEE------HHHHHT..-EE CS
   PF08534.5   2 aGdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcptCsaehpylekl.aklakekgvdvvavvaqndafvkeawak......eglkipvlsDesasfakalglrlte 107
                  Gd +Pdf+   +++   +++l+   +g   ++++ p+ f  + s  +  l+k  ++l  e +v  +av+ +  + + ++ ++        +++p+++D +a++ k++gl    
  MMETSP0890-20130614|7253_1  42 IGDYIPDFV---AQSTRGEIDLHVaVDGAWSLVYICPRSFDAVASSDLATLAKMsEELSTELKVRRFAVSCDALPSIERWKKDiqelldCVIDFPIIADLDAHIVKKFGLV--R 150
                 6999*****...45788899999999************99999999999*****77788899999999999998888888888**99996679****************65..2 PP

>> PF03950.13  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.14     102     134 ..       2      36 ..       1      62 [. 0.77
   2 ?   -2.8   0.0       1.2     4e+03      35      73 ..     207     250 ..     189     273 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
  PF03950.13 102 kkkgiihWvsa..eeaveaevrlYdrLfkeedded 134
                 k++++i Wv +  ++av+ ++ lYdrL++e+++++
  MMETSP0890-20130614|7253_1   2 KTRTKIAWVDTrpSSAVSGTAELYDRLMSEDENKN 36 
                 5667*******87777888********88777442 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.2
  PF03950.13  35 pelgerevpfs.keiyiereD.....akrlkpgeevrLkelynik 73 
                 p l +r  ++s + ++i+ +D     ak+  p+ +v+++ ++ ++
  MMETSP0890-20130614|7253_1 207 PLLATRANWMSgDDVFIS-SDisftqAKTQFPKGMVQIRPWFRLT 250
                 445555555553466665.44566666666667777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 991.37
//
Query:       MMETSP0890-20130614|7251_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-62  210.1   0.0    3.9e-62  209.6   0.0    1.2  1  PF00069.20 Protein kinase domain
      3e-38  131.3   0.0    4.3e-38  130.7   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
      0.007   16.0   0.1       0.41   10.2   0.0    2.4  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.057   12.3   0.0      0.098   11.5   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.6   0.0   1.1e-65   3.9e-62       1     260 []     192     463 ..     192     463 .. 0.93

  Alignments for each domain:
  == domain 1    score: 209.6 bits;  conditional E-value: 1.1e-65
                 EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH........HHHHHHHHH-TTB--EEEEEEE..STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.....CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr........ElkilkklsHpnivkllevfee..kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.....eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                 ++l++++G+GsfG+Vy ++++ tg+ +AvK+l  +++ + +   + +        E++++++++Hpniv++l++  +  + +ly+++e+v+gg++++l +++g+++++ +++++++il+gl ylH n+iiHrD+K +NiL+d++g+ k+aDFG +  l      +++ +l+t+ gt+++mAPEvl+  ++ ++++DvWs+G +  +++t ++p+++ +  +   l+ +i k++ + ++++++  s+ lk++i +++++dp+ R+ a e+l +p++
  MMETSP0890-20130614|7251_1 192 WKLGKCIGNGSFGSVYTCMDEATGQLMAVKALAIPTSCQVTGLDSDQselaklckEIEYMRSFNHPNIVRYLGATVDeaSLQLYIFQEWVPGGSIANLSAQYGEFRDKVVRRYTTHILRGLVYLHTNQIIHRDIKAANILVDENGVAKLADFGASHRLgkdgtLTNDIQLQTMRGTPYFMAPEVLQ--NKFGRRSDVWSVGGVALQMATTHPPWKTLNFVNPVILFFHIAKTEAPPPIDQYNL-SSGLKSFILRCFTRDPHLRPHASELLYDPFI 463
                 57899**************************988765443322111124457899******************99997778899************9999********************************************************99****999999*****************9..9************************************************999865.89************************99986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0   1.3e-41   4.3e-38       2     255 ..     193     457 ..     192     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 130.7 bits;  conditional E-value: 1.3e-41
                 EEEEEE-------EEEEEEETTTTSSEEEEEEEEECT.........TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSS..EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCE...EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTS..HHHHHHHHH..HTT-BS--.-TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlke.........saeeeekeefleeakimkklkhpnivkllgvctkeep..llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyy...kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl..sneevlell..kegkrlek.pekcpeelyelmkqCweeepeeRptfkel 255
                 +lgk +G+G+fG+V+ ++ +     + +  avK l           +++++e +++++e++ m++++hpniv++lg+ ++e +  l+i  e+v+gG++ ++  ++   +++ k + +++++i +G+ yL++++++Hrd+ a N+L++e+ v k++DfG ++++ kd +     + ++ +    +mapE+l+ +kf  +sDvWs G +   ++t  + p+++l   n  +l +   k++   +  + + ++ l++++ +C++++p+ Rp+ +el
  MMETSP0890-20130614|7251_1 193 KLGKCIGNGSFGSVYTCMDE----ATGQLMAVKALAIptscqvtglDSDQSELAKLCKEIEYMRSFNHPNIVRYLGATVDEASlqLYIFQEWVPGGSIANL-SAQ-YGEFRDKVVRRYTTHILRGLVYLHTNQIIHRDIKAANILVDENGVAKLADFGASHRLGKDGTLtndIQLQTMRGTPYFMAPEVLQ-NKFGRRSDVWSVGGVALQMAT-THPPWKTLnfVNPVILFFHiaKTEAPPPIdQYNLSSGLKSFILRCFTRDPHLRPHASEL 457
                 57899************988....55555666665322223345557888889**************************6665569************985.555.69*******************************************************888777444455666678889****986.68******************9.5699999843333333333123333333313467899*****************99987 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.017        58      58      89 ..     262     295 ..     236     305 .. 0.77
   2 !   10.2   0.0   0.00012      0.41     165     187 ..     317     337 ..     296     347 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.017
                 EE..E-CSSCSCEEEEEE---HHBCCT..CSHHH CS
  PF01636.18  58 lagdtdddvlgllfalleyvpgevler..klnar 89 
                 + g t d+ ++ l+ ++e+vpg ++++  +++ +
  MMETSP0890-20130614|7251_1 262 YLGATVDEASLQLYIFQEWVPGGSIANlsAQYGE 295
                 445799999999*************995444444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00012
                 --EEB-SS-SGGGEEEETTTTEE CS
  PF01636.18 165 ppvllHgDlhpgNllvdpddgrv 187
                   +++H+D++ +N+lvd  ++ v
  MMETSP0890-20130614|7251_1 317 TNQIIHRDIKAANILVD--ENGV 337
                 579**************..4444 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.9e-05     0.098     104     166 ..     285     344 ..     276     361 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.9e-05
   PF06293.9 104 dLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                 ++a++ a++ e+ +++ r+    + r    +h  ++ H+d+ a+nil+de++    + l D+ 
  MMETSP0890-20130614|7251_1 285 SIANLSAQYGEFRDKVVRRYTTHILRGLVYLHTNQIIHRDIKAANILVDENG---VAKLADFG 344
                 677788888888888899999999999999********************98...66666765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.77
# Mc/sec: 1643.22
//
Query:       MMETSP0890-20130614|7254_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-08   33.2   0.0      1e-07   32.0   0.0    1.6  1  PF01541.19 GIY-YIG catalytic domain
    0.00019   20.9   3.2    0.00044   19.7   2.2    1.7  1  PF00628.24 PHD-finger
     0.0061   16.1   3.0      0.012   15.2   2.1    1.5  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
      0.049   13.4   1.1        0.2   11.5   0.7    2.1  1  PF11793.3  FANCL C-terminal domain
      0.055   13.0   5.3      0.072   12.6   1.6    2.4  2  PF14446.1  Prokaryotic RING finger family 1
       0.19   11.6   2.7       0.42   10.5   1.9    1.6  1  PF07649.7  C1-like domain
       0.64   10.1   5.7        1.3    9.1   4.0    1.5  1  PF13771.1  PHD-like zinc-binding domain
        9.7    5.8   9.1         20    4.8   4.2    2.6  2  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)


Domain annotation for each model (and alignments):
>> PF01541.19  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     6e-11     1e-07       2      76 ..      44     120 ..      43     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 6e-11
                 ---EEEEET...TT--EE----SSHHHHHHHHHHHHH----S-HH--.--EEEE.ES------HHHHHHHHHHHHHHTT CS
  PF01541.19   2 wgvYiivnk...knkvlYiGstnnlerRlkeHnagkesketkqkkygkdkfelt.iveeirtkqealelEkelikkynp 76 
                 +g+Y++++        +YiG t+n+ rR+++Hn + +  ++k++   k+++ ++ +v  +r++ eal++E+++    ++
  MMETSP0890-20130614|7254_1  44 CGCYLVRSTlsqHRYSIYIGFTVNPLRRIRQHNGEIQGGARKTR--SKRPWCFVaLVNGFRSQVEALQFEWAWQHPKKS 120
                 67888885533244557***************888766666665..489999999*****************9877666 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.2   2.6e-07   0.00044       2      50 ..     241     289 ..     240     290 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.6e-07
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHST..TB-SCCCHC CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                 C++Cg+  e+g++ +C +Ck + H++Clg      ++  g  + +C+ C +
  MMETSP0890-20130614|7254_1 241 CALCGG--EGGDFHVCRQCKAAAHVSCLGNAFAAVSVRGGrsQGTCPFCAK 289
                 ******..7********************9998777777688889999975 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.1   6.9e-06     0.012       3      45 ..     241     289 ..     239     290 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.9e-06
   PF13639.1   3 CaiCldelsegeevvrlp.CgHvfHeeCldewl........rssnsCPlCrk 45 
                 Ca+C  e     ++++++ C+   H++Cl   +        rs+++CP C k
  MMETSP0890-20130614|7254_1 241 CALCGGEG---GDFHVCRqCKAAAHVSCLGNAFaavsvrggRSQGTCPFCAK 289
                 99999985...56777777************98777777777788*****76 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   0.00011       0.2      26      68 ..     255     294 ..     239     296 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
                 TT----B-SGGGHHHHHHHH----TTT------TTT-S---GG CS
   PF11793.3  26 ekCnkkfHaaCLkeWlrslkesrqsfdvlfGeCPyCkkkisvk 68 
                  +C+   H +CL + ++ ++        + G+CP+C k+i +k
  MMETSP0890-20130614|7254_1 255 RQCKAAAHVSCLGNAFAAVSVRG---GRSQGTCPFCAKQIILK 294
                 4899999******9999776443...3478********99876 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.6   4.2e-05     0.072       7      36 ..     240     266 ..     236     272 .. 0.88
   2 ?    0.0   0.0      0.37   6.3e+02       5      16 ..     281     292 ..     278     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.2e-05
   PF14446.1   7 rCavCgkklkdkddivvCpeCgapyHreCw 36 
                 +Ca+Cg +     d  vC +C+a  H +C 
  MMETSP0890-20130614|7254_1 240 ACALCGGEG---GDFHVCRQCKAAAHVSCL 266
                 7*****986...8****************7 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.37
   PF14446.1   5 ktrCavCgkklk 16 
                 ++ C+ C k++ 
  MMETSP0890-20130614|7254_1 281 QGTCPFCAKQII 292
                 678999999875 PP

>> PF07649.7  C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   0.00025      0.42       3      29 ..     241     265 ..     239     266 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00025
   PF07649.7   3 CdaCglpidggpfYsCseCdFvlHeeC 29 
                 C +Cg ++++  f +C +C    H++C
  MMETSP0890-20130614|7254_1 241 CALCGGEGGD--FHVCRQCKAAAHVSC 265
                 999*****96..999************ PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.0   0.00075       1.3      36      87 ..     238     288 ..     207     291 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00075
   PF13771.1  36 klkCslCkkkkGaciqCskkkCkrafHvtCakeagllleeee.keeklksyCk 87 
                  + C lC  + G    C++  Ck+a Hv C  +a + ++ +  +++ ++ +C 
  MMETSP0890-20130614|7254_1 238 PMACALCGGEGGDFHVCRQ--CKAAAHVSCLGNAFAAVSVRGgRSQGTCPFCA 288
                 468*******888889988..**********9999998887534455666665 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.2     0.012        20      11      45 ..     238     268 ..     216     272 .. 0.84
   2 ?    0.6   0.0      0.24   4.1e+02       9      21 ..     279     291 ..     274     302 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.012
                 --B-TTT-SB---------EETTT--B--STT--- CS
  PF00130.17  11 ptfCkhCgkflwgkgkqglkCswCqllvHkkCfek 45 
                 p+ C+ Cg            C++C+   H +C+ +
  MMETSP0890-20130614|7254_1 238 PMACALCGGEG----GDFHVCRQCKAAAHVSCLGN 268
                 66677776655....77889************875 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.24
                 SS--B-TTT-SB- CS
  PF00130.17   9 kqptfCkhCgkfl 21 
                 ++ ++C  C+k++
  MMETSP0890-20130614|7254_1 279 RSQGTCPFCAKQI 291
                 57899******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:01.18
# Mc/sec: 830.60
//
Query:       MMETSP0890-20130614|7256_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.056   13.0   3.1      0.065   12.7   2.1    1.2  1  PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
      0.068   12.0   1.9      0.086   11.7   1.3    1.1  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit
       0.56   10.0   2.5       0.86    9.4   1.7    1.5  1  PF07904.8  Chromatin modification-related protein EAF7


Domain annotation for each model (and alignments):
>> PF06088.6  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.1   1.4e-05     0.065      91     164 ..      62     134 ..      19     137 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
   PF06088.6  91 kptvlkkgsviFkivytnkksansklflsapveksssededdeddededeaakiesnsdseesepssaKkqklD 164
                 + t+lk +++  +++++ ++++ +++ ++a  ++ ss+ edd+ +e+++ ++ +++n d++++  +s ++q+ D
  MMETSP0890-20130614|7256_1  62 AATILKCDTSSSSTQLDAQRHTTTDAIKEALLNSYSSD-EDDDQEEEGKSNNIASMNDDENQNYHQSVRPQVND 134
                 45666666666667777799999999999998655555.55555558888888899978888878887777655 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3   1.9e-05     0.086       5      76 ..      51     126 ..      48     137 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.9e-05
  PF03896.11   5 sklllllllalpavlllvgavkklaas.aqdltedeeae...ddvvdedeedeaeveedekteaeeeedeeeagev 76 
                  kl+ l++  ++a++l ++++++ +++ aq  t+ ++++    ++ ++de+d++e+e  +++ a  ++de+++ + 
  MMETSP0890-20130614|7256_1  51 AKLIDLSFNQVAATILKCDTSSSSTQLdAQRHTTTDAIKealLNSYSSDEDDDQEEEGKSNNIASMNDDENQNYHQ 126
                 688999999999**99998877665541577776666662334566778888777777766668888887744333 PP

>> PF07904.8  Chromatin modification-related protein EAF7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.7   0.00019      0.86      32      73 ..      71     112 ..      29     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00019
   PF07904.8  32 nsskeepklkkefsaediwekLstlYnLekldele...ealeese 73 
                 +ss+++   +++++++ i+e L ++Y  ++ d++e   +   +++
  MMETSP0890-20130614|7256_1  71 SSSSTQLDAQRHTTTDAIKEALLNSYSSDEDDDQEeegK---SNN 112
                 4557888999**********************9995541...332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.84
# Mc/sec: 413.66
//
Query:       MMETSP0890-20130614|7262_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   12.6  36.1       0.19   11.2  10.5    2.6  2  PF13488.1 Glycine zipper
        1.3    9.1  37.5    4.7e+03   -2.2  26.0    2.1  1  PF11759.3 Keratin-associated matrix
        3.5    7.1  30.5       0.47    9.8   9.4    2.9  3  PF13441.1 YMGG-like Gly-zipper


Domain annotation for each model (and alignments):
>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  16.1   0.00086       3.9       1      38 [.      17      53 ..       1      54 [. 0.85
   2 ?   11.2  10.5   4.3e-05      0.19       2      31 ..      38      68 ..      37      70 .] 0.82

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00086
   PF13488.1  1 iGaaiGAaaGAaiGaaaggagkGAliGAavGaaaGali 38
                +G ++G ++G  +G+++g  g G ++G +vG a+G+++
  MMETSP0890-20130614|7262_1 17 VGSGVGSGVGCDVGSGVGS-GDGCAVGSGVGCAVGSAV 53
                5777778888888888875.9**************997 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 4.3e-05
   PF13488.1  2 GaaiGAaaGAaiGaaag.gagkGAliGAavG 31
                G a+G ++G a+G+a+  g+g+G+++G +vG
  MMETSP0890-20130614|7262_1 38 GCAVGSGVGCAVGSAVTvGSGVGSVVGSGVG 68
                899**********998656788888888887 PP

>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2  26.0         1   4.7e+03      10      64 ..       6      60 ..       1      70 [] 0.50

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1
   PF11759.3 10 glgygsggyG.glGcgygCgygsirrlGyGsgfggyGsGsGYG.GyGygcgrpsgyg 64
                g+  gs g G  +G g+g+g g+  + G+Gsg  g+ +GsG G  +G + + +sg g
  MMETSP0890-20130614|7262_1  6 GCDVGS-GVGsDVGSGVGSGVGCDVGSGVGSG-DGCAVGSGVGcAVGSAVTVGSGVG 60
                222333.5665666666666665555555555.444445555544454444444443 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   6.2    0.0093        42      12      43 ..       4      34 ..       1      35 [. 0.47
   2 ?    9.8   9.4    0.0001      0.47       6      42 ..      18      53 ..      17      54 .. 0.93
   3 ?    5.7  10.3    0.0021       9.6       4      35 ..      36      68 ..      34      70 .] 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0093
                XXXXXXXXXXXXXX---------------TTH CS
   PF13441.1 12 aaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                ++G  +G  +G    G  +G ++G  +G  +g
  MMETSP0890-20130614|7262_1  4 GVGCDVGSGVG-SDVGSGVGSGVGCDVGSGVG 34
                44444555555.44455555555555555544 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0001
                XXXXXXXXXXXXXXXXXXXX---------------TT CS
   PF13441.1  6 GAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaa 42
                G ++G ++G  +G  +G  g G a+G ++G ++G a+
  MMETSP0890-20130614|7262_1 18 GSGVGSGVGCDVGSGVG-SGDGCAVGSGVGCAVGSAV 53
                88999999999******.99**************986 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0021
                XXXXXXXXXXXXXXXXXXX.XXX---------- CS
   PF13441.1  4 vaGAaiGAaaGAaiGaaaG.gggkGAaiGAaaG 35
                + G a+G ++G a+G a+  g g G ++G ++G
  MMETSP0890-20130614|7262_1 36 GDGCAVGSGVGCAVGSAVTvGSGVGSVVGSGVG 68
                568899999999999999977777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 258.07
//
Query:       MMETSP0890-20130614|7263_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.5   0.2        2.7    7.6   0.0    2.3  2  PF03804.8 Viral domain of unknown function


Domain annotation for each model (and alignments):
>> PF03804.8  Viral domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0002       2.7      11      32 ..      13      34 ..       6      50 .. 0.75
   2 ?    2.8   0.0    0.0061        84       2      38 ..      82     117 ..      81     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0002
   PF03804.8 11 ykenivahidHLarlRaLidgk 32
                + e+    +dHL rlR+L d +
  MMETSP0890-20130614|7263_1 13 FLEESNVPVDHLERLRKLSDDH 34
                445555569*********9976 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0061
   PF03804.8   2 kfslRltreykenivahidHLarlRaLidgkvtsadv 38 
                 +f lRl  + k +   +++   + R+Lid     a+ 
  MMETSP0890-20130614|7263_1  82 RFCLRLESDNKTDS-EELEEARKKRDLIDHSCAVANL 117
                 89999999998884.6888889999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 636.53
//
Query:       MMETSP0890-20130614|7269_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.71
# Mc/sec: 185.63
//
Query:       MMETSP0890-20130614|7267_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-12   43.6   0.2    4.7e-06   25.5   0.0    2.7  2  PF13202.1  EF hand
      2e-11   42.1   0.2    7.1e-06   24.8   0.0    2.6  2  PF00036.27 EF hand
      9e-11   41.6   0.2    2.5e-09   37.0   0.1    2.5  1  PF13499.1  EF-hand domain pair
    1.4e-10   40.0   0.1    6.5e-06   25.4   0.0    2.6  2  PF13405.1  EF-hand domain
    1.1e-09   37.5   0.2      2e-07   30.3   0.0    2.3  2  PF13833.1  EF-hand domain pair
     0.0056   16.5   5.9       0.14   12.0   0.1    3.4  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
       0.31   11.1   4.3        0.9    9.6   0.3    2.8  2  PF11159.3  Protein of unknown function (DUF2939)
        3.4    7.5   7.5       0.61    9.9   1.5    2.3  2  PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus


Domain annotation for each model (and alignments):
>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.8e-09   4.7e-06       3      23 ..      66      86 ..      64      89 .. 0.88
   2 !   15.4   0.0   4.4e-06    0.0075       2      21 ..     116     135 ..     115     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.8e-09
                HHHHHH--S----B-HHHHHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreELkr 23
                ++F+a+D+N+DG+++ eEL++
  MMETSP0890-20130614|7267_1 66 SFFEAADKNKDGQVTLEELQA 86
                68*****************98 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4.4e-06
                 HHHHHHH--S----B-HHHH CS
   PF13202.1   2 kdtFrafDlNgDGkIsreEL 21 
                 +++++++D+NgDG +  eE+
  MMETSP0890-20130614|7267_1 116 QALLKELDVNGDGALQLEEM 135
                 7899***************7 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.2e-09   7.1e-06       1      28 [.      63      90 ..      63      91 .. 0.91
   2 !   14.9   0.0   6.2e-06     0.011       2      25 ..     115     138 ..     114     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.2e-09
                HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkk 28
                e+  +F+ +Dk++dG++++eE+++alk+
  MMETSP0890-20130614|7267_1 63 EIASFFEAADKNKDGQVTLEELQAALKD 90
                56779********************986 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkea 25 
                 ++ + ke+D++gdG + +eE++++
  MMETSP0890-20130614|7267_1 115 VQALLKELDVNGDGALQLEEMVDI 138
                 67889****************987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   1.5e-12   2.5e-09       4      64 ..      66     137 ..      30     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 1.5e-12
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels........deevre.......vldyifkelDkngdGvlsfeEflq 64 
                   F++ Dk++dg+++ eeL+++lk  +   s             e        +++++kelD ngdG l++eE++ 
  MMETSP0890-20130614|7267_1  66 SFFEAADKNKDGQVTLEELQAALKDKLVATStsprskrrA----EelvashqRVQALLKELDVNGDGALQLEEMVD 137
                 35**********************9988777886655551....0555567799999****************986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.8e-09   6.5e-06       2      27 ..      64      89 ..      63      96 .. 0.91
   2 !   11.9   0.0   8.5e-05      0.14       2      25 ..     115     138 ..     114     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.8e-09
                HH---GCC-------B---HHHHHHH CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLr 27
                + ++F++ Dk++dG++++eEL++aL+
  MMETSP0890-20130614|7267_1 64 IASFFEAADKNKDGQVTLEELQAALK 89
                678**********************9 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8.5e-05
                 HH---GCC-------B---HHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrda 25 
                 ++++ k +D +gdG + +eE++d+
  MMETSP0890-20130614|7267_1 115 VQALLKELDVNGDGALQLEEMVDI 138
                 5778899**************987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     3e-05     0.052      26      53 ..      63      90 ..      61      91 .. 0.91
   2 !   30.3   0.0   1.2e-10     2e-07       1      49 [.      75     137 ..      75     142 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3e-05
   PF13833.1 26 evdilfrefDtdgdGkisfeEFcvller 53
                e+   f ++D ++dG +++eE  ++l++
  MMETSP0890-20130614|7267_1 63 EIASFFEAADKNKDGQVTLEELQAALKD 90
                78899*****************999986 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.2e-10
   PF13833.1   1 ekGlItreeLkral.allglkg.............lseeevdilfrefDtdgdGkisfeEFcv 49 
                 ++G++t eeL+ al ++l   +              s++ v++l++e+D +gdG++ +eE ++
  MMETSP0890-20130614|7267_1  75 KDGQVTLEELQAALkDKLVATStsprskrraeelvASHQRVQALLKELDVNGDGALQLEEMVD 137
                 59****************88889***********999999*******************9765 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   8.2e-05      0.14      74     110 ..      43      84 ..      32      87 .. 0.80
   2 ?    0.9   0.1      0.24   4.1e+02       9      43 ..     138     171 ..     136     178 .. 0.70
   3 ?   -1.7   0.0       1.5   2.5e+03      12      40 ..     323     351 ..     321     365 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.2e-05
   PF10591.4  74 sElaplrapl.....vklehCikeffksCDadkdkkisleEW 110
                 +E+++l+++l      k++  i++ff+++D +kd++++leE 
  MMETSP0890-20130614|7267_1  43 EEVKALENELysetkAKMQTEIASFFEAADKNKDGQVTLEEL 84 
                 67777777776666668899999****************996 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.24
   PF10591.4   9 laefpeRlrdwlknvlaqlkerdeekehseeleke 43 
                 ++++ +Rl + +k   ++++e++ ++ +s++l+++
  MMETSP0890-20130614|7267_1 138 ISQMRNRLERRIKMEQKEAAESQASQ-ESSALVAK 171
                 67899999999999988888888877.44444433 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.5
   PF10591.4  12 fpeRlrdwlknvlaqlkerdeekehseel 40 
                 +++R++d l n ++++ e+++  e    l
  MMETSP0890-20130614|7267_1 323 YAKRFVDNLDNSVKSFLETATAAEANLLL 351
                 56788888888888777777766443333 PP

>> PF11159.3  Protein of unknown function (DUF2939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.17   2.8e+02      39      86 ..      46      97 ..      35     104 .. 0.68
   2 ?    9.6   0.3   0.00053       0.9      31      69 ..     131     168 ..     124     178 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.17
   PF11159.3 39 palresLkaqltaelakri....speladnplaalgaalaaalidpvvdalv 86
                +al + L ++ +a+++++i    +++ +++++++  + l+aal d++v +  
  MMETSP0890-20130614|7267_1 46 KALENELYSETKAKMQTEIasffEAADKNKDGQVTLEELQAALKDKLVATST 97
                6777778888888888888777766666666666666666677777776655 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00053
   PF11159.3  31 alselvDfpalresLkaqltaelakrispeladnplaal 69 
                 +l+e vD  ++r+ L+++++ e ++++ ++ a+++ +al
  MMETSP0890-20130614|7267_1 131 QLEEMVDISQMRNRLERRIKMEQKEAA-ESQASQESSAL 168
                 799*********************988.44444444555 PP

>> PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.5   0.00036      0.61       4      33 ..      33      61 ..      31      66 .. 0.86
   2 ?   -0.8   0.2      0.78   1.3e+03       5      31 ..     138     160 ..     135     170 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00036
   PF07334.8  4 eiqkenirLkeeiqkLeaELQelkrefqik 33
                e+++e +rL ee++ Le EL + ++  +++
  MMETSP0890-20130614|7267_1 33 ELEREAQRLREEVKALENELYSETKA-KMQ 61
                8999*****************99997.444 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.78
   PF07334.8   5 iqkenirLkeeiqkLeaELQelkrefq 31 
                 i +   rL+++i+ +e   Q+ + e+q
  MMETSP0890-20130614|7267_1 138 ISQMRNRLERRIK-ME---QKEAAESQ 160
                 6666778888887.33...33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1330  (0.0972791); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:00.73
# Mc/sec: 1201.46
//
Query:       MMETSP0890-20130614|7270_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 318.32
//
Query:       MMETSP0890-20130614|7266_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.2   6.9      2e-11   43.4   4.8    1.5  1  PF00397.21 WW domain
    4.3e-06   26.0   0.7    1.3e-05   24.4   0.5    1.9  1  PF02205.15 WH2 motif
  ------ inclusion threshold ------
      0.015   15.2   1.1      0.033   14.1   0.7    1.5  1  PF01473.15 Putative cell wall binding repeat
       0.28   10.3  13.3       0.36   10.0   9.2    1.1  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   4.8   5.8e-15     2e-11       1      31 []      11      40 ..      11      40 .. 0.96

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 5.8e-15
                ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21  1 lppgWeersddddGrvYYyNheTgetqWekP 31
                lppgWe++ +dd G +YY+N++T et+W+kP
  MMETSP0890-20130614|7266_1 11 LPPGWEAYQTDD-GEWYYFNTATEETTWDKP 40
                8*****999888.*****************9 PP

>> PF02205.15  WH2 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.5   3.8e-09   1.3e-05       7      30 .]      77      98 ..      76      98 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.8e-09
  PF02205.15  7 ALLsdIrkGgkiqLKKvaetndrs 30
                 LL++I+kG  +qLKK+++++++s
  MMETSP0890-20130614|7266_1 77 GLLGEIQKG--KQLKKAPKSVEKS 98
                69*******..99*******9998 PP

>> PF01473.15  Putative cell wall binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7   9.8e-06     0.033       4      14 ..      19      29 ..      16      30 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.8e-06
                EEETTEEEEES CS
  PF01473.15  4 vkdngnWYYfd 14
                ++d+g WYYf+
  MMETSP0890-20130614|7266_1 19 QTDDGEWYYFN 29
                79********9 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.2    0.0001      0.36     231     362 ..      30     203 ..       7     205 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............................................................................................XXXXXXXXXXXHHHHHH.........HHHHHHHHHHHHHHHHHHHHHH CS
  PF04652.11 231 seapssspgvpsfpspdeseasnkdsqlPsaPty................aqknssssqsvfPpsseeeetssssppsteapssppvqapsapakp..........................slssakPtaqsassaqaqplqsvapqiaageitlddeaiakaqKhaKwAiSA 362
                 ++ ++ ++  p+ p+p+ ++a+ +++  ++aP                  +++++ ++ +++P+s e+++   ss +st a  ++p ++  ++ +                           +  ++ Pt+qs++++   +++  ++q+++++  + ++ ++++   a+ AiSA
  MMETSP0890-20130614|7266_1  30 TATEETTWDKPEKPKPTRAPAPRATPAATPAPAPapaprpggnpmaggllGEIQKGKQLKKAPKSVEKSPVGGSSSSSTAAARPTPGGVAGQLNSVlgggggggggggfkeimrknreaaarKAGTTSPTPQSSTTTNSSQPSWLKNQQSSTSSAPAPSPVSSTVSSARAAISA 203
                 4455555556666666666666665555555544556667899999****777777777788888777766666666666666666666554444455666677777777777778888888999******************999999************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.88
# Mc/sec: 656.28
//
Query:       MMETSP0890-20130614|7271_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 160.90
//
Query:       MMETSP0890-20130614|7272_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   12.8   0.3      0.041   12.7   0.2    1.1  1  PF03265.10 Deoxyribonuclease II
      0.051   13.0   0.5      0.061   12.8   0.3    1.1  1  PF13036.1  Protein of unknown function (DUF3897)
       0.16   12.5   1.5       0.18   12.3   1.1    1.2  1  PF13145.1  PPIC-type PPIASE domain
        2.5    7.2   7.5        2.8    7.0   5.2    1.1  1  PF00529.15 HlyD family secretion protein


Domain annotation for each model (and alignments):
>> PF03265.10  Deoxyribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.2e-05     0.041      39      96 ..      45     100 ..      19     113 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
  PF03265.10  39 etwelaaknindt..esalgrTlkqlyksskkselasllYnDqppksea.ssesahaKGvl 96 
                 ++++ ++++++ +  +  l+++l     s  ++++ + +YnD++ +++  ++  +h KG+ 
  MMETSP0890-20130614|7272_1  45 KQNNPSSQHLDISsaSANLTSSL-----SLRRRNTLYRTYNDKKQTHSYsNNRIGHDKGMR 100
                 44444444444441033333333.....446899*********99988868888*****85 PP

>> PF13036.1  Protein of unknown function (DUF3897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.8e-05     0.061      38     100 ..       9      78 ..       4     101 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.8e-05
   PF13036.1  38 aaeemidsllasp....lvaqllkadgvr.pvllvdsvkNkTsehidtesltkkirraLlksgkftf..v 100
                 aa++m+ds+ a+     +++q+ +a + +   l+  + +N +s+h+d++s+ ++++++L    + t+  +
  MMETSP0890-20130614|7272_1   9 AADRMADSIRAAEeaafRLQQAASAAEAAmAALANAKQNNPSSQHLDISSASANLTSSLSLRRRNTLyrT 78 
                 66777777765541111344555555555899***************************98877777431 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   5.3e-05      0.18      31      76 ..      18      65 ..       3      92 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.3e-05
   PF13145.1 31 keevaaeaalaaakakagedfaalakgnsed..akdlgisesesdlpe 76
                +++++a+++l++a+ +a++++aala+ + ++   + l+is+ +++l  
  MMETSP0890-20130614|7272_1 18 RAAEEAAFRLQQAASAAEAAMAALANAKQNNpsSQHLDISSASANLTS 65
                5678899999999999**9*9999888777744666777777766654 PP

>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.2   0.00082       2.8      80     163 ..       9      84 ..       2      95 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00082
                 -HHHHHHHHHHHHHH..........HHHHHHHHHHHHTTEEE-S--..-----BSS-B---------S-SEEEEEESSEEEEEEE CS
  PF00529.15  80 sekeadaarrearealaasqalaaskaeleaardnlasaeaalpasl.gsikasqatlgalltnlqaqglaakaqldeaklqlaq 163
                 +++  ++ +r+a+ea ++ q    ++++ eaa ++la+a+ + p+s+   i+ + a+l +        +l +++ l+  + + +q
  MMETSP0890-20130614|7272_1   9 AADRMADSIRAAEEAAFRLQ---QAASAAEAAMAALANAKQNNPSSQhLDISSASANLTSS------LSLRRRNTLYRTYNDKKQ 84 
                 44556666777777766666...9999999****************443333333333333......445566666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      568  (0.0415448); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.75
# Mc/sec: 373.83
//
Query:       MMETSP0890-20130614|7275_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0049   15.8   0.5     0.0049   15.8   0.3    1.6  2  PF04518.7  Effector from type III secretion system
  ------ inclusion threshold ------
      0.054   12.8   0.1       0.11   11.7   0.1    1.5  1  PF07445.7  Primosomal replication protein priB and priC
      0.056   13.2   0.3       0.13   12.0   0.0    1.7  2  PF02284.11 Cytochrome c oxidase subunit Va
      0.057   12.5   0.7      0.089   11.9   0.1    1.6  2  PF05549.6  Allexivirus 40kDa protein
      0.066   13.0   0.4        2.4    8.0   0.0    2.3  2  PF06657.8  Centrosome microtubule-binding domain of Cep57
       0.19   11.2   2.1       0.15   11.6   0.5    1.4  2  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
       0.38   10.3   2.7       0.36   10.4   0.2    2.1  3  PF03836.10 RasGAP C-terminus
        8.8    6.6   6.6    2.5e+02    1.9   4.6    2.8  1  PF12732.2  YtxH-like protein


Domain annotation for each model (and alignments):
>> PF04518.7  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   2.5e+03     225     245 ..      18      38 ..       9      44 .. 0.49
   2 !   15.8   0.3   2.9e-06    0.0049     198     269 ..      54     126 ..      46     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.4
   PF04518.7 225 avleellakvkadakltseqk 245
                 ++l++  a v++ a+ t e k
  MMETSP0890-20130614|7275_1  18 NFLKKAAADVQNRANTTVEAK 38 
                 334444444444444444433 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.9e-06
   PF04518.7 198 syeealaklekEkeqirsdikscerakavleellakvkad.akltseqkkelldtlnsYkselnaileqLslL 269
                 + ++++++++ E+  +++ ++  ++ +avle++ + + +  +++++eqk+el + +  Y+  ++a+ + +  L
  MMETSP0890-20130614|7275_1  54 TKGNMRSAVQSETVVLAQCTDTLHQYEAVLEQMNKTISEAgTSISEEQKNELTKFIPIYQARVKACKTAIDAL 126
                 5677889999999999*********************76526*********************9998877665 PP

>> PF07445.7  Primosomal replication protein priB and priC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.7e-05      0.11     112     164 ..      74     126 ..      49     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.7e-05
   PF07445.7 112 aqhqeferrLlemveerelqlekassleqqklqkellalegRLaRCrkAlski 164
                    +++e  L +m +    + ++ s++++++l k +  +++R++ C++A+ ++
  MMETSP0890-20130614|7275_1  74 DTLHQYEAVLEQMNKTISEAGTSISEEQKNELTKFIPIYQARVKACKTAIDAL 126
                 456899*********999999999999**********************9876 PP

>> PF02284.11  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.8e-05      0.13      61     104 ..      58     101 ..      53     105 .. 0.89
   2 ?   -2.4   0.0       2.4   4.1e+03      70      86 ..     147     163 ..     140     172 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.8e-05
  PF02284.11  61 lasairvleavkdkvgdekelykylleelkptlqelGiptkeel 104
                 + sa++   +v  ++ d  ++y+++le++++t  e G ++ ee 
  MMETSP0890-20130614|7275_1  58 MRSAVQSETVVLAQCTDTLHQYEAVLEQMNKTISEAGTSISEEQ 101
                 567888888899999**99**********************995 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.4
  PF02284.11  70 avkdkvgdekelykyll 86 
                  vk kv+d k+  + + 
  MMETSP0890-20130614|7275_1 147 FVKGKVEDVKKRSQEVA 163
                 46778877776555554 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.9   4.9e+03     215     229 ..      29      44 ..      15      45 .. 0.59
   2 ?   11.9   0.1   5.2e-05     0.089      72     141 ..      61     130 ..      48     146 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2.9
   PF05549.6 215 seqattvky.kllDdG 229
                 ++ +ttv+  kllDdG
  MMETSP0890-20130614|7275_1  29 NRANTTVEAkKLLDDG 44 
                 3445555532577777 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.2e-05
   PF05549.6  72 sllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelssse 141
                 ++ s+t +L++  d+l++ + +l++++++ ++  +s++++++++l+k +   + ++++ ++ +d l+++ 
  MMETSP0890-20130614|7275_1  61 AVQSETVVLAQCTDTLHQYEAVLEQMNKTISEAGTSISEEQKNELTKFIPIYQARVKACKTAIDALVETP 130
                 357899**************************************99999999999***999999988764 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.054        92      44      62 ..       5      23 ..       3      34 .. 0.85
   2 ?    8.0   0.0    0.0014       2.4      17      56 ..      67     106 ..      57     115 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.054
   PF06657.8 44 daslskrkrkeLaqeleel 62
                 +s+s+rk++e+++ l++ 
  MMETSP0890-20130614|7275_1  5 GSSSSHRKKREVMNFLKKA 23
                579***********99986 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0014
   PF06657.8  17 evlkeLeDElehlkmeyqeladelkkldaslskrkrkeLa 56 
                  vl++  D l+++   ++++++++ +   s s+++++eL 
  MMETSP0890-20130614|7275_1  67 VVLAQCTDTLHQYEAVLEQMNKTISEAGTSISEEQKNELT 106
                 6999*********************************996 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.9   4.9e+03     202     211 ..      15      24 ..       7      40 .. 0.60
   2 ?   11.6   0.5   8.9e-05      0.15      47     148 ..      65     176 ..      57     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.9
                 HHHHHHHHH- CS
   PF08840.6 202 kilkFlkkhl 211
                 ++++Flkk+ 
  MMETSP0890-20130614|7275_1  15 EVMNFLKKAA 24 
                 4445555443 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 8.9e-05
                 --EEEE----------EEETTE..EE------GGG-EE.........-----EE-TT-S--------STTS--GGG----EEEEE--.--SSS-HHHHHHHHHHHHHH---- CS
   PF08840.6  47 savvlingsavvvegkllykeeskvlpelkesleklkv.........nenglldildtlallksklaekalipverakgpillvvge.dDknwpSkesaekaserLkkagkk 148
                 + vvl  ++ + ++ +++ ++ +k++ e + s ++ ++         ++  +   + +++ l + +  +a+ pve+   ++l+v+g+ +D   +S+e+a+ka+ + + +++ 
  MMETSP0890-20130614|7275_1  65 ETVVLAQCTDTLHQYEAVLEQMNKTISEAGTSISEEQKneltkfipiYQARVKACKTAIDALVETPPAPAISPVEDDAIKMLFVKGKvEDVKKRSQEVADKAMTKVQGNKNT 176
                 56888888888888888888888778777777777766777788888888888888999999999999******************64999************999988776 PP

>> PF03836.10  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.82   1.4e+03      30      45 ..      18      33 ..       6      44 .. 0.51
   2 ?   10.4   0.2   0.00021      0.36      39      78 ..      52      91 ..      48     117 .. 0.86
   3 ?   -1.7   0.0       1.1   1.9e+03      97     107 ..     147     157 ..      96     174 .. 0.51

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.82
  PF03836.10 30 ellneIakdIrnkrrl 45
                ++l++ a+d++n+ + 
  MMETSP0890-20130614|7275_1 18 NFLKKAAADVQNRANT 33
                3444444444444444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00021
  PF03836.10 39 IrnkrrlrekrkkElkkleqtlkkLreknkyleeqldqYk 78
                + +k+++r+ +++E+  l+q  ++L++ ++ le++ ++  
  MMETSP0890-20130614|7275_1 52 LSTKGNMRSAVQSETVVLAQCTDTLHQYEAVLEQMNKTIS 91
                6799**************************9999877655 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.1
  PF03836.10  97 fskqklsvkkk 107
                 f k+k++  kk
  MMETSP0890-20130614|7275_1 147 FVKGKVEDVKK 157
                 33333333333 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   4.6      0.15   2.5e+02      41      73 ..      78     164 ..      11     179 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.15
   PF12732.2  41 kaqelltearek..........................................................vkekaesladkvkekakelke 73 
                 + + +l++++++                                                          vk k+e+    vk++++e+++
  MMETSP0890-20130614|7275_1  78 QYEAVLEQMNKTiseagtsiseeqkneltkfipiyqarvkacktaidalvetppapaispveddaikmlfVKGKVED----VKKRSQEVAD 164
                 44444444444444444445555555555566666666666666666666666666666666666666666666666....8888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1055  (0.077165); expected 273.4 (0.02)
Passed bias filter:                      721  (0.0527355); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 692.70
//
Query:       MMETSP0890-20130614|7282_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.85    9.0  13.0        0.8    9.0   9.0    1.0  1  PF03066.10 Nucleoplasmin
        5.9    5.9   7.3        5.2    6.1   5.1    1.0  1  PF06524.7  NOA36 protein
        8.6    6.5  12.9        8.2    6.6   9.0    1.1  1  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.0   0.00018       0.8     105     133 ..       5      33 .]       1      33 [] 0.60

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00018
                 EE...........----XXXXXXXXXXXX CS
  PF03066.10 105 hlvaleedesldeeddeedeeeeddeedd 133
                 +lv   + ++++++ddee+e+ee+dee+d
  MMETSP0890-20130614|7282_1   5 NLVHQVDWSKFKDDDDEEEEDEEEDEEED 33 
                 55555555666667777777777666665 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.1    0.0011       5.2     266     289 ..       9      33 .]       1      33 [] 0.57

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0011
   PF06524.7 266 svnygyes.dddeeesaedydeeed 289
                  v++++   dddeee++e++deeed
  MMETSP0890-20130614|7282_1   9 QVDWSKFKdDDDEEEEDEEEDEEED 33 
                 4566655404555556666666665 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.0    0.0018       8.2      20      36 ..      16      32 ..       3      33 .] 0.49

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0018
   PF09026.5 20 eedeeedeededeedee 36
                ++d++e+eede+e++ee
  MMETSP0890-20130614|7282_1 16 KDDDDEEEEDEEEDEEE 32
                44444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       647  (0.047323); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.45s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 116.29
//
Query:       MMETSP0890-20130614|7281_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-11   43.0   0.0      6e-11   42.3   0.0    1.4  1  PF00622.23 SPRY domain


Domain annotation for each model (and alignments):
>> PF00622.23  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   4.4e-15     6e-11       2     123 ..     102     238 ..     101     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 4.4e-15
                 --EEEEEE-TT-S-...........EEE--EETTS--------STT-.----EEEECTTEEEE--S.S-EEE--SS--SEE-EE...E-S----EEEEECTCT.-....EEEE-S------EE--EE---.---S-EEEE CS
  PF00622.23   2 gkhyfevevddgge.........shirvGwatkeakrkgeenllgedegswgldlskgskyhavts.eetgeklqeegdviGvl...lDleggeisFtkngkhlg....iyafrnvefgeklfPavslka.gnairlnlg 123
                 g+ yfev + +g++         +++ vG++ k+     + +++g+d +s g+++++g+ +h++    ++   ++  gd+iGv+   lD ++  ++Ft ng+       i+   +++   +l+P+v+l   + a+ +n+g
  MMETSP0890-20130614|7281_1 102 GIGYFEVAIISGESapppanappACVAVGICSKSF--ALGGKMPGWDRKSVGYHGDDGNFFHGSGRgSQFHRRFGL-GDTIGVGliqLDQNTTLLFFTLNGTLFHsskfITVRDDARQKPALYPVVALDHpSLALVVNFG 238
                 677********9999*******9************..7*******************88888876679********.*****98444599999*********99988966555699999*********988888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:01.25
# Mc/sec: 601.96
//
Query:       MMETSP0890-20130614|7277_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-31  107.4   0.0    8.6e-31  106.9   0.0    1.2  1  PF04187.8 Protein of unknown function, DUF399


Domain annotation for each model (and alignments):
>> PF04187.8  Protein of unknown function, DUF399
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   6.3e-35   8.6e-31       3     211 ..      77     308 ..      75     310 .. 0.80

  Alignments for each domain:
  == domain 1    score: 106.9 bits;  conditional E-value: 6.3e-35
   PF04187.8   3 sleqlaarladadvvllGEsHdnpehhrlqlrllkale...earp.rla..lglEmfprdqqpaldrylag..eldeeeleealdwqkgWpydwalYrplleaarearlpllalnvprevvrkvsreGleslseaerallpskas...lpseeyrelleeifaehcea..leeele..........rfleaQslwDatMAesivral...ep.ggpvvviaGsgHvekglGvparl 211
                 + ++++++l++ + + lGE  +++ +h++++ +++a++   +a++ ++   +glE + ++ q++ld +++g    + ++l++a++w ++Wpy+ + Y  +l+++re +lp+lal ++   + k+ ++Gl++l+++  ++l+ ++    l++ ++ +++++   + ++   +    +          + +    +wD+ MA ++++ +   ++ + +++v++G+ Hv +g G p r 
  MMETSP0890-20130614|7277_1  77 AAKDAVKSLLNVQTIWLGEHRTDAVDHEMEAGIVAAVAvakAANGgQPCvgVGLEAVRTEYQSVLDDFVSGkmPANLQTLAKATKWAEHWPYPIESYDSVLALCRELELPILALGASSPDIDKIEHQGLAALDKDAWNRLDLPEGatiLANYNNAQFINKEVPSFESSslF----QntagtlstfaNHYCGRLVWDESMAARAAAWIeahQDeDPTLLVLTGAEHVTNGCGAPDRC 308
                 67899********************************8555334445541278******************5455679*********************************************************888877777643334444444444433222222222....12234455556777788*************9999644688999**************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.72
# Mc/sec: 1254.76
//
Query:       MMETSP0890-20130614|7279_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-38  130.8   0.1      5e-38  130.3   0.0    1.2  1  PF00551.14 Formyl transferase
    9.4e-10   37.6   0.0    2.5e-09   36.3   0.0    1.8  1  PF01842.20 ACT domain
    3.3e-06   26.6   0.0      1e-05   25.0   0.0    1.8  2  PF13740.1  ACT domain
    0.00071   19.7   0.5      0.007   16.5   0.0    2.7  3  PF13291.1  ACT domain
     0.0052   16.1   0.0      0.022   14.1   0.0    2.0  2  PF13840.1  Family description


Domain annotation for each model (and alignments):
>> PF00551.14  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.0   1.8e-41     5e-38       2     181 .]     104     280 ..     103     280 .. 0.95

  Alignments for each domain:
  == domain 1    score: 130.3 bits;  conditional E-value: 1.8e-41
                 EEEEEE-----HHHHHHHHHHCTS-EE-EEEEEES-TT----HHHHHHH-EEEEB-GCGSCSHHHCHHHHHHHHHCG--SEEEES---S---HHHHCCT---EEEEESS-TTTTB---HHHHHHH----EE-EEEEE--SS----EEEEEEEEE--TT--HHHHHHHCCCCHHHHHHHHH CS
  PF00551.14   2 kivvlisgtgsnlqalldalrkgnleaeivlvvtnkdkaaglekaeqasiptevfeekkltprsqseselakslaelkadlivlagygkllpkellqafplkilniHpSlLPrfrGaaaiqraleaGdketGvtvhfvdeelDtGpilaqkkveviaedtseelenrvaeaehkalveal 181
                 k  +l+s+  ++l+++l + r+++l+ ei +v++n+++++  + +e+ +ip+  +   +++ ++q+e+++ k +++ k +li+la y++++++++  +++++i+niH+S+LP+f+Ga+++++a+e+G+k +G+t hf++  lD+Gpi+ q+ v++++ +  ++l+   ++ e k+l +a+
  MMETSP0890-20130614|7279_1 104 KTCLLVSKADHCLNDILYRWRTKHLNIEITAVISNHETCR--SLVENCGIPFYYLP-VNVDDKQQQEEQIMKVIDQTKTELIILARYMQIISETFCTKYQGRIINIHHSFLPSFKGAKPYHQAYERGVKIIGATAHFATSDLDEGPIIEQDIVRIDHSYAPKKLQILGKDTEAKVLARAI 280
                 567899*********************************9..77899999987665.678888899999**********************************************************************************************************99986 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   9.1e-13   2.5e-09       1      51 [.      20      69 ..      20      83 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 9.1e-13
                EEEEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS.EEEEEEEEEECH CS
  PF01842.20  1 tvlevgvpDrPGlLaevfgaLadrgiNidsisqstsgdkagivfvtvvvde 51
                ++l v+ +DrPG++a+v+++La++++Ni+   q+ ++   g+++++vv+  
  MMETSP0890-20130614|7279_1 20 HILKVHSADRPGVVAAVATTLAEANCNIEESAQFNDHL-TGLFYMRVVISP 69
                678999*******************************9.444444444443 PP

>> PF13740.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.8e-09     1e-05       5      66 ..      22      86 ..      19      94 .. 0.78
   2 ?   -2.5   0.0       1.4   3.9e+03      56      69 ..     168     181 ..     158     208 .. 0.64

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.8e-09
   PF13740.1  5 itvtGpdrpGltasLtevlaefgcnildsrqavihgrltLgmlvsgp...eeaierlekaLlfla 66
                + v  +drpG++a+++ +lae +cni +s q   h + ++ m v ++   e aie   + ++++a
  MMETSP0890-20130614|7279_1 22 LKVHSADRPGVVAAVATTLAEANCNIEESAQFNDHLTGLFYMRVVISplsEGAIENFHSLFQETA 86
                567889***********************998888888888888888664446666555555555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.4
   PF13740.1  56 erlekaLlflaqel 69 
                 e+++k ++++ +el
  MMETSP0890-20130614|7279_1 168 EQIMKVIDQTKTEL 181
                 45555555444333 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06     0.007       9      52 ..      22      65 ..      20      68 .. 0.81
   2 ?   -0.9   0.0      0.71     2e+03      49      60 ..     129     140 ..     109     148 .. 0.62
   3 ?   -1.2   0.0      0.85   2.3e+03      11      32 ..     158     179 ..     155     183 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.6e-06
   PF13291.1  9 leveasdrkglLaditqviseekaniesvniesrkkdglaeikl 52
                l+v++ dr+g++a ++++++e++ nie+    +++  gl+ +++
  MMETSP0890-20130614|7279_1 22 LKVHSADRPGVVAAVATTLAEANCNIEESAQFNDHLTGLFYMRV 65
                799***********************986655543367777766 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.71
   PF13291.1  49 eikltleVkdle 60 
                 +i++t  +++ e
  MMETSP0890-20130614|7279_1 129 NIEITAVISNHE 140
                 444444444444 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.85
   PF13291.1  11 veasdrkglLaditqviseeka 32 
                 v + d++    +i++vi ++k+
  MMETSP0890-20130614|7279_1 158 VNVDDKQQQEEQIMKVIDQTKT 179
                 6667777777888888888876 PP

>> PF13840.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.9e-06     0.022       9      38 ..      22      47 ..      15      56 .. 0.84
   2 ?   -2.4   0.0       1.1   3.1e+03      27      37 ..      66      76 ..      63      78 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.9e-06
                EEE---.---S----HHHHHHHHHT----- CS
   PF13840.1  9 lsvvgsglpfdvtGivakiaspLaeagIsi 38
                l+v+++    d +G+va++a+ Laea+ +i
  MMETSP0890-20130614|7279_1 22 LKVHSA----DRPGVVAAVATTLAEANCNI 47
                677777....99***************998 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.1
                HHHHHHT---- CS
   PF13840.1 27 iaspLaeagIs 37
                ++spL+e  I+
  MMETSP0890-20130614|7279_1 66 VISPLSEGAIE 76
                899**998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 860.38
//
Query:       MMETSP0890-20130614|7289_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00034   20.1   0.1    0.00065   19.2   0.1    1.4  1  PF13405.1  EF-hand domain
  ------ inclusion threshold ------
      0.021   14.8   0.1      0.037   14.0   0.1    1.5  1  PF13499.1  EF-hand domain pair
       0.14   11.3   0.1       0.23   10.7   0.0    1.4  1  PF00036.27 EF hand


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.4e-07   0.00065       6      27 ..       2      23 ..       1      32 [. 0.91

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.4e-07
                -GCC-------B---HHHHHHH CS
   PF13405.1  6 FklfDkdgdGkidaeELrdaLr 27
                F+l+D+d dG ++ae+Lr+a+ 
  MMETSP0890-20130614|7289_1  2 FNLYDHDDDGLLEAEQLRQAID 23
                *******************987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   8.1e-06     0.037       6      34 ..       2      30 ..       1      75 [. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.1e-06
   PF13499.1  6 FkllDkdgdgyldkeeLlrllkhlgsels 34
                F+l+D d dg l+ e L+++++ l  ++ 
  MMETSP0890-20130614|7289_1  2 FNLYDHDDDGLLEAEQLRQAIDTLTLPIG 30
                99*******************99887765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.1e-05      0.23       6      26 ..       2      22 ..       1      25 [. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.1e-05
                HHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  6 FkefDkDgdGkIsfeEfkeal 26
                F+++D D dG ++ e +++a+
  MMETSP0890-20130614|7289_1  2 FNLYDHDDDGLLEAEQLRQAI 22
                99****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 641.38
//
Query:       MMETSP0890-20130614|7284_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-52  176.5   0.0    6.7e-50  170.1   0.0    2.2  2  PF02543.10 Carbamoyltransferase


Domain annotation for each model (and alignments):
>> PF02543.10  Carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0012        17      49      92 ..     250     292 ..     242     363 .. 0.69
   2 !  170.1   0.0   4.9e-54   6.7e-50     160     360 .]     401     608 ..     375     608 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0012
  PF02543.10  49 gaslgllylkftellgfklnsdegKvmalaayGeedkeivalld 92 
                 ++slg  y+ + ++   + n   gKvm+la++G     ++++++
  MMETSP0890-20130614|7284_1 250 CDSLGAAYSYVSHVIFGDWN-ACGKVMGLAPWGAYATLATESFN 292
                 56788888666666555555.88**********55554444444 PP

  == domain 2    score: 170.1 bits;  conditional E-value: 4.9e-54
  PF02543.10 160 elk.iernlalaGGvalNvklNsklleeglFkdifvqPaanDaGlalGaallalvelde...lkpless..vYlGpelsneielkeaawkakieseeee.vlsevaelladgkvvgllqGrmElGPRALGnRSiladprkaemkdrlNekvk.ResfrPfaPsvleerapeifeldees..pyMlivvkvreekrdklpavvHvDgtaRvQ 360
                 +++  ++ + ++GGvalN +l +k  ++ + +++fv+ a++D+G+alG+a+ a+   ++   +  ++ s  ++ G e+++e   +   +++ ++  +++ ++s    l+ d ++v ++qGr+E+GPRALG RSila pr++ + d +N+++k Re+frP+aP vl+e a e+fe + ++  p+M  v +vr e r+ +pa vHvD taR+Q
  MMETSP0890-20130614|7284_1 401 HFGnNAHVITFSGGVALNSVLIGKAEQKLKSSQVFVPCAPGDEGVALGCAVIAARIANNknnFITFDTSilPFAGAEIVSENVSDSILVREWLTPIQDDaLPSA---LVNDTAIVFWYQGRAEFGPRALGHRSILASPRDPFVVDYINKVIKgREDFRPLAPAVLAECAAELFEISANErsPFMSKVWRVRPEARSLIPACVHVDYTARPQ 608
                 4443445699****************************************987644433467666677679**********55556666666666556656654...556899************************************************************98877666*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.41s 00:00:01.57 Elapsed: 00:00:00.96
# Mc/sec: 2004.45
//
Query:       MMETSP0890-20130614|7291_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.32s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 623.05
//
Query:       MMETSP0890-20130614|7288_1  [L=858]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.05   13.3   0.4         14    5.4   0.2    2.9  2  PF00338.17 Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> PF00338.17  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0017        23      13      46 ..     241     274 ..     235     282 .. 0.91
   2 ?    5.4   0.2     0.001        14      38      81 ..     754     797 ..     715     826 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHTST-EEE-EEE-S-EEEEEEE CS
  PF00338.17  13 lekavkqiieaakrlglkvsgpiplPtkrkrvtv 46 
                 +e +v+ i e+a++  +  ++p +l++k k+v +
  MMETSP0890-20130614|7288_1 241 IEAFVNLILEKANEIPASAKKPAALKKKDKEVKT 274
                 7899*************************99876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.001
                 S-EEEEEEEE-S--S-SSSEEEEEEEEEEEEEEESCE-HHHHHH CS
  PF00338.17  38 Ptkrkrvtvlrsphvdkksreqfeirthkrlidipnatpktvda 81 
                 P  ++ vtvl+s +   +   + e+  h r i +p  t +t +a
  MMETSP0890-20130614|7288_1 754 PSVEQAVTVLKSRFCTDEDDLEAELDAHIRRITMPATTTSTTKA 797
                 444689****************************8777777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.27u 0.39s 00:00:01.66 Elapsed: 00:00:01.28
# Mc/sec: 1606.31
//
Query:       MMETSP0890-20130614|7293_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.89
# Mc/sec: 869.69
//
Query:       MMETSP0890-20130614|7294_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-22   78.3   0.1    5.5e-22   77.7   0.0    1.2  1  PF00248.16 Aldo/keto reductase family
  ------ inclusion threshold ------
       0.07   12.8   0.2       0.23   11.2   0.0    1.8  2  PF02310.14 B12 binding domain


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0     8e-26   5.5e-22      16     262 ..      21     269 ..      11     277 .. 0.88

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 8e-26
  PF00248.16  16 edealellraal.eaGinlfDtAeyYgkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgt.dylD.llllhrpdpslp..............................sieevlealeelkkeGkirhiGvSnfsveilekakkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselake.hgvslaqlalryalsrpavgsvipgassieqleen 262
                 +++  +++  al ++G++++DtA++    ++ee++++a++     ++ + i+tKv     +   l  e+ + ++++ +k +   +++D ++llh+p   ++                              + ++ ++ale++ +   i +iG+Snf+ ++ + +   +  +i   +++ n+++ l ++ l+ l++ ++v+i +y +++ G+l +++                 a ++++++ +  +g ++a ++l+++    ++++ ip + ++e+l en
  MMETSP0890-20130614|7294_1  21 HESIDRIVSIALrDYGFRVIDTAQAS---RNEEIIARAIQN---VQDRIQIVTKV-----WYTMLGFERTRYAINETIKIFFEqETIDlIVLLHWPYCRSDiswmhcedeetqlseeikqlgspphldrenAWKDSWKALEDAYELNQIQGIGISNFDLDQTRDL--FSFAQILPHYAQINVWHVLYNQPLIALLKSRNVQIQVYNVMH-GILARQK----------------FAPKAYDQIQQFgQGAKPATVVLAWLA--VQNIATIPRTANLEHLAEN 269
                 5666788999999**********985...************...***********.....9999**************997555****99*************************************7777777777****************************..666666666666666666899********************9.5776554................355677777777799************..9****************99 PP

>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05      0.23       9      50 ..      17      58 ..      10      73 .. 0.80
   2 ?   -2.1   0.0      0.43     3e+03      40      80 ..     222     271 ..     198     277 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
  PF02310.14  9 ggdvhplGlayvaaalraaGfeveildanvenedivealaae 50
                g+  h    ++v+ alr++Gf+v++     +ne+i++++ ++
  MMETSP0890-20130614|7294_1 17 GNLGHESIDRIVSIALRDYGFRVIDTAQASRNEEIIARAIQN 58
                55566666689***************888899****988776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.43
  PF02310.14  40 n.......edivealaaeepdvvglSalftssleaakelara..akrvrp 80 
                 +       ++i +  +  +p  v+l  l  ++++ + ++a++  +++++p
  MMETSP0890-20130614|7294_1 222 QkfapkayDQIQQFGQGAKPATVVLAWLAVQNIATIPRTANLehLAENSP 271
                 35555666777777777788888888888888888888887755555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.82
# Mc/sec: 1256.63
//
Query:       MMETSP0890-20130614|7298_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-18   67.7   0.0    2.3e-18   66.7   0.0    1.5  1  PF05199.8  GMC oxidoreductase
    3.5e-10   39.4   0.7    5.3e-10   38.8   0.5    1.2  1  PF00732.14 GMC oxidoreductase


Domain annotation for each model (and alignments):
>> PF05199.8  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   3.3e-22   2.3e-18      28     143 ..     194     301 ..     176     303 .. 0.93

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 3.3e-22
   PF05199.8  28 prDvaalvealkklrkileaaalsklllaeltpgpekeekdaaeasdealleavrraavttwHplGtcrMGkdekdgVVD.sdlrvygvknLrVvDaSvfPsapggnptltvyalAe 143
                 +rDv++l+ +++ +rki+++++ls+++ +e +pg        a++++e+l ++v +a+++ +H ++++ +    k+g +D ++lr +g++nL+V+DaS+fP +p+gn++ tv+a+A+
  MMETSP0890-20130614|7298_1 194 QRDVDRLAIGVRRVRKIFAEKPLSDFIIQETRPGI-------AVQTHEQLAQWVDSAFTQNAHYCCSVNFD--SKSGSLDsATLRFKGIDNLYVADASAFPHIPNGNVHSTVVAVAA 301
                 57********************************9.......9999999*******9*************8..7778899799********************************97 PP

>> PF00732.14  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.5   7.7e-14   5.3e-10     250     298 .]      12      59 ..       3      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 7.7e-14
                 EEEE-----SHHHHHHH-----HHHHTT-----SS---.--------EE CS
  PF00732.14 250 evvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlpgvGkNLqdHpv 298
                  +++ aGa+ +P+lL+ SG+G+ +   + + + +v++p vGkNLqdHpv
  MMETSP0890-20130614|7298_1  12 SIILTAGAVLTPHLLLASGIGPSDA-IPKNKEHIVNAPHVGKNLQDHPV 59 
                 589********************99.888999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.75
# Mc/sec: 1073.57
//
Query:       MMETSP0890-20130614|7299_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 580.94
//
Query:       MMETSP0890-20130614|7301_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.4   0.2    2.5e-13   49.9   0.1    1.2  1  PF02566.14 OsmC-like protein


Domain annotation for each model (and alignments):
>> PF02566.14  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1   1.8e-17   2.5e-13       2      99 ..      57     171 ..      55     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.8e-17
                 T------HHHHH---HHHHHHHHHHHTGGGT---SEEEEEEE--B-SS---............---EEE....EEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHH.----SSEE CS
  PF02566.14   2 ggsgpsPeelllaalasClaitlravakkkgikleslevevegerdpegfr............gfeeir....lkvevkldgadeeeklkellekaekrCpvsntl.kngvkvev 99 
                  +++  P+e llaal +C ++t++ v +++gi+l+s+  e+++erd++g +            ++++i+    + v  k+  +++++++ el + +++rCp++ ++ ++g+++e+
  MMETSP0890-20130614|7301_1  57 CDTAAEPVETLLAALIGCEQATAHFVGRMMGIRLKSINFELHAERDARGSMhtpvtevapvtsQLTSITgsakCLVSSKSRRGSTQQEIHELGTIVHNRCPIATMVvNSGCTLEI 171
                 46799******************************************9988**999999999977777744234444444446667********************999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 597.45
//
Query:       MMETSP0890-20130614|7302_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.1   0.0      0.024   13.7   0.0    1.2  1  PF08745.6 UPF0278 family


Domain annotation for each model (and alignments):
>> PF08745.6  UPF0278 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-06     0.024      79     154 ..     101     168 .]      78     168 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-06
   PF08745.6  79 ksPnryevkipaellyeyieelreridkGlrvaEeavreaaaealkeeveeevvgkiikklRekYRealRkGilDs 154
                  +P+ry++++ ++     ie+  + i +Glr  +  v + +++   ++  +      +++ R+kYR+ lR G+l s
  MMETSP0890-20130614|7302_1 101 ATPSRYDLQLCSS---ASIEDDNAIIAHGLRRRDALVSRNEQTD--KRLAS---LVALRSRRQKYRDSLRGGTLSS 168
                 5899999999986...5688889999999999888887655544..22222...2356899************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 649.34
//
Query:       MMETSP0890-20130614|7304_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-38  131.9   0.0    2.1e-38  131.4   0.0    1.2  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.1e-06   29.3   0.0      3e-06   27.9   0.0    1.8  1  PF13207.1  AAA domain
    9.9e-06   25.9   1.2    2.4e-05   24.6   0.8    1.9  1  PF13191.1  AAA ATPase domain
    1.4e-05   24.8   0.0    3.8e-05   23.3   0.0    1.8  2  PF09336.5  Vps4 C terminal oligomerisation domain
    1.6e-05   24.8   0.2    0.00012   22.1   0.1    2.2  1  PF13401.1  AAA domain
    3.7e-05   22.7   0.0    5.8e-05   22.1   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00032   20.2   0.5      0.001   18.6   0.3    2.1  1  PF13245.1  Part of AAA domain
    0.00043   19.0   0.0    0.00059   18.5   0.0    1.1  1  PF06068.8  TIP49 C-terminus
    0.00046   19.5   0.3      0.012   14.8   0.1    2.2  2  PF13481.1  AAA domain
    0.00083   19.1   0.0     0.0014   18.3   0.0    1.4  1  PF13671.1  AAA domain
    0.00084   18.9   0.2     0.0043   16.6   0.2    2.1  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0016   18.2   0.0     0.0031   17.3   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
     0.0024   17.1   0.1     0.0048   16.2   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
     0.0065   15.5   0.1      0.016   14.2   0.0    1.5  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0069   16.5   0.1      0.014   15.5   0.1    1.7  1  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.018   14.8   0.0    1.5  1  PF13521.1  AAA domain
      0.021   14.6   0.0      0.035   13.8   0.0    1.4  1  PF13173.1  AAA domain
      0.024   14.1   0.1       0.04   13.3   0.0    1.3  1  PF13479.1  AAA domain
      0.027   13.5   0.0      0.059   12.4   0.0    1.5  1  PF02562.11 PhoH-like protein
      0.051   12.9   0.0       0.17   11.2   0.0    1.9  2  PF00158.21 Sigma-54 interaction domain
      0.059   12.8   0.1       0.64    9.4   0.0    2.2  2  PF05729.7  NACHT domain
      0.065   13.3   0.0       0.11   12.5   0.0    1.3  1  PF00910.17 RNA helicase
      0.092   12.3   0.0        0.5    9.9   0.0    2.1  1  PF01637.13 Archaeal ATPase
       0.13   10.9   0.0       0.21   10.3   0.0    1.2  1  PF01057.12 Parvovirus non-structural protein NS1
       0.16   10.9   0.0       0.48    9.3   0.0    1.7  2  PF06745.8  KaiC


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   3.8e-41   2.1e-38       1     131 [.      47     181 ..      47     182 .. 0.97

  Alignments for each domain:
  == domain 1    score: 131.4 bits;  conditional E-value: 3.8e-41
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.SS..TTHCHHHHHHHHHHHHHTTTT.....S.TEEEEEE-SSGGGS-HHHHHTTSCCEEE-- CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkkk.....eskvivigatnrpdkldpallrgRfdrkieie 131
                 +llyGppGtGKTlla+ava e+g +f+++s s+l+sk++ge+ek +r+lf  ak+ a ps +f+DE+da+  +r ++se+e ++r+ n++l  l++ ++       +++++igatnrp++ld+all +R+ r++ i+
  MMETSP0890-20130614|7304_1  47 ILLYGPPGTGKTLLARAVAAESGLTFFSLSSSSLTSKWLGEAEKLVRALFALAKKGA-PSAIFLDELDAILARRgESSEHEASRRLKNEFLIRLEDASNFssmhpVKRILFIGATNRPWDLDDALL-RRLPRRVLIP 181
                 69******************************************************9.****************9999*********************99**99777******************.7****99887 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.4e-09     3e-06       2      77 ..      47     127 ..      47     212 .. 0.62

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.4e-09
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG.B-..........-GGGS-B--.---B--SSGGGB-HHHHHHHH....H..HHHHHH CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd.ll..........reeglkeld.dgereskdadadllaaildglaakkdtlswvidg 77 
                 i+++GppG+GK+ la+++a + gl  +sl++  l          ++++l  l  +g +    + +d+l+ail++       +s   + 
  MMETSP0890-20130614|7304_1  47 ILLYGPPGTGKTLLARAVAAESGLTFFSLSSsSLtskwlgeaekLVRALFALAkKGAP--SAIFLDELDAILARRG-----ESSEHEA 127
                 899******************9****99999653445444444433333322213332..4566667777766662.....2222233 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.8   4.3e-08   2.4e-05      22      65 ..      42      83 ..      33     242 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.3e-08
   PF13191.1 22 gsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65
                + p  +l++Gp+G+GK+ L+r++a   + ++l f +   + l+  
  MMETSP0890-20130614|7304_1 42 SPPsGILLYGPPGTGKTLLARAVA---AESGLTFFSLSSSSLTSK 83
                33348*****************55...444555555544444444 PP

>> PF09336.5  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       8.9   4.9e+03      45      60 ..     206     221 ..     203     222 .. 0.78
   2 !   23.3   0.0     7e-08   3.8e-05      29      62 .]     257     290 ..     241     290 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 8.9
                 SS-HHHHHHHHHHHHC CS
   PF09336.5  45 tVskeDlekheeFtke 60 
                 t+ ++D+ +  + t+ 
  MMETSP0890-20130614|7304_1 206 TLKHADILRLAKATDG 221
                 8889999999887765 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 7e-08
                 -B-HHHHHHHHHCS--SS-HHHHHHHHHHHHC-- CS
   PF09336.5  29 pvtlkDflkalkttkptVskeDlekheeFtkefG 62 
                 pv l+Df kal+++kp+  ++ l+k+ee+t+ +G
  MMETSP0890-20130614|7304_1 257 PVALSDFYKALEAVKPSADSSLLQKYEEWTRSYG 290
                 899*****************************99 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   2.1e-07   0.00012       7      88 ..      47     121 ..      41     161 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.1e-07
   PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast...spkellqkllsalglpakgrltteellealqealrrrrt 88 
                 ++++G++G+GKT+l+r +a +          + + f+ +++s+   ++ + ++kl++al   ak+ + ++  l+ l   l+rr++
  MMETSP0890-20130614|7304_1  47 ILLYGPPGTGKTLLARAVAAE----------SGLTFFSLSSSSltsKWLGEAEKLVRALFALAKKGAPSAIFLDELDAILARRGE 121
                 79******************5..........455555555554436666667777777776666633333333555555555544 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.1e-07   5.8e-05      52     166 ..      46     170 ..      39     193 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.1e-07
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgPv.....lekagdlaalltnleek...dvlfideihr.lsraveevlysamedfkldivigkGpsarsvkl.dlpkftlvgattraglltsPl 166
                  +llyGpPG Gkt la+ +a+e g ++ + s+       l  a+ l+  l +l++k     +f+de+   l+r  e   + a    k +++i    +++  ++  +++  ++gat r   l   l
  MMETSP0890-20130614|7304_1  46 GILLYGPPGTGKTLLARAVAAESGLTFFSLSSSSltskwLGEAEKLVRALFALAKKgapSAIFLDELDAiLARRGESSEHEASRRLKNEFLIRLEDASNFSSMhPVKRILFIGATNRPWDLDDAL 170
                 58*********************998766555540111145577888888888776333579999998625666666777777777777777766655554442577777788887766665555 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   1.9e-06     0.001       9      33 ..      44      66 ..      38     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.9e-06
   PF13245.1  9 gnpllvvtGgPGtGKTttlaaiiaa 33
                ++++l+  G+PGtGKT +la+++aa
  MMETSP0890-20130614|7304_1 44 PSGILL-YGPPGTGKT-LLARAVAA 66
                456655.9********.66666654 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-06   0.00059      38     103 ..      27      95 ..       3      98 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-06
   PF06068.8  38 vivelikekklaG.....ravLlaGppgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                 v++ +i+ +  +G      ++Ll GppgtGkt la a++ e g  + f +ls+s + s  +  +e l++al
  MMETSP0890-20130614|7304_1  27 VVLPFIRPDLYSGlrsppSGILLYGPPGTGKTLLARAVAAESG--LTFFSLSSSSLTSKWLGEAEKLVRAL 95 
                 55556666555553333358********************988..99**********99999999988775 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.2e-05     0.012      23      55 ..      34      66 ..      22      86 .. 0.78
   2 ?    2.6   0.0      0.12        68     129     169 ..      91     132 ..      71     148 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.2e-05
   PF13481.1 23 dwlvkgllprgsltllaGapgtGKStlalqlaa 55
                  l +gl  + s +ll+G+pgtGK+ la + aa
  MMETSP0890-20130614|7304_1 34 PDLYSGLRSPPSGILLYGPPGTGKTLLARAVAA 66
                45677777777779************9977666 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.12
   PF13481.1 129 dlerllaaieelegpdlvviDtlsrlvgg.densnsdv.gavi 169
                  +++l a++++   p+ + +D l+++++  +e s++++ +++ 
  MMETSP0890-20130614|7304_1  91 LVRALFALAKK-GAPSAIFLDELDAILARrGESSEHEAsRRLK 132
                 56778888888.67***********888867777777655554 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-06    0.0014       2      39 ..      47      86 ..      47     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.6e-06
   PF13671.1  2 vllvGlpGsGKstlaerllkklg..yvrlsqdtlrkrlfg 39
                +ll G+pG+GK+ la++++++ g  ++ ls+  l +++ g
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAVAAESGltFFSLSSSSLTSKWLG 86
                6899******************976666777765444443 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   7.8e-06    0.0043       2      22 ..      47      67 ..      46     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.8e-06
                EEEE------HHHHHHHGGGG CS
   PF07728.9  2 vlLvGppGtgKselaerlaea 22
                +lL GppGtgK+ la+ +a+ 
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAVAAE 67
                89**************99875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.6e-06    0.0031       4     128 ..      45     161 ..      42     169 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.6e-06
                 --EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--...-EEEETGGG----..------------HHHHHHHH---EE-------EE-TT--EEEE-- CS
   PF07724.9   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpk..essgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtga 128
                 + ill gp g+Gkt+la+a+a    +    ++  +  s+l+      + + + +    +  + +++G    ++lDE+d i ++  ess+++ Sr    + L ++ + ++ +  +      k ilfI +++
  MMETSP0890-20130614|7304_1  45 SGILLYGPPGTGKTLLARAVAAESGL----TFFSLSSSSLTS-----KWLGEAEKLVRALFALAKKGapsAIFLDELDAILARrgESSEHEASRRLKNEFLIRLEDASNFSSMHP----VKRILFIGATN 161
                 5699********************98....999999999999.....333333333333344444444559*********99999999999999877777777777777776666....67777777666 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.8e-06    0.0048      49      70 ..      46      67 ..      42      86 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.8e-06
  PF01695.12 49 nlvllGpsGvGKthlAialgve 70
                 ++l Gp+G+GKt lA a++ e
  MMETSP0890-20130614|7304_1 46 GILLYGPPGTGKTLLARAVAAE 67
                689***************9875 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.9e-05     0.016      25      42 ..      47      64 ..      45      68 .. 0.90
   2 ?   -3.5   0.0       7.5   4.1e+03     103     116 ..      97     113 ..      78     118 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.9e-05
  PF01078.16 25 lllvGppGsGKtmlakrl 42
                +ll+GppG+GKt+la+++
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAV 64
                89*************987 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 7.5
  PF01078.16 103 slahnG...vLfLDElp 116
                 +la++G    +fLDEl 
  MMETSP0890-20130614|7304_1  97 ALAKKGapsAIFLDELD 113
                 56666633348999985 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.5e-05     0.014       1      22 [.      47      68 ..      47     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-05
   PF13238.1  1 IlitGtpGvGKtTlakeLaerl 22
                Il+ G+pG+GKt la++ a + 
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAVAAES 68
                89****************8774 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.3e-05     0.018       2      24 ..      47      70 ..      46     137 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.3e-05
   PF13521.1  2 ivitGgpstGKTtlleaLaar.gy 24
                i + G+p+tGKT l++a+aa+ g 
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAVAAEsGL 70
                7899***************87554 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-05     0.035       5      73 ..      47     115 ..      44     150 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.4e-05
   PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkla..dpe.llelfleklke.kkkylflDEiqev 73 
                 ++++Gp ++GKt l++ +a e        +++l + +l  +   + e l ++++ ++k+   + +flDE   +
  MMETSP0890-20130614|7304_1  47 ILLYGPPGTGKTLLARAVAAESG----LTFFSLSSSSLTSKWlgEAEkLVRALFALAKKgAPSAIFLDELDAI 115
                 689***************98877....7888888877744332233245566666643337788*****8765 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.4e-05      0.04       6      23 ..      47      64 ..      44      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.4e-05
   PF13479.1  6 vliYGkpGiGKTslaktl 23
                +l+YG+pG+GKT la+ +
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAV 64
                699**********99865 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.059      23      42 ..      48      67 ..      40      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
  PF02562.11 23 faiGpaGtGKTylavalave 42
                ++ Gp GtGKT+la a+a+e
  MMETSP0890-20130614|7304_1 48 LLYGPPGTGKTLLARAVAAE 67
                678*************9987 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.17      23      46 ..      45      68 ..      35     103 .. 0.86
   2 ?   -2.1   0.0       3.6     2e+03      88     104 ..      95     114 ..      82     118 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0003
                S-EEEE-------HHHHHHHHHTS CS
  PF00158.21 23 ltvlitGesGtGKellAraiheas 46
                + +l+ G  GtGK+llAra+ ++s
  MMETSP0890-20130614|7304_1 45 SGILLYGPPGTGKTLLARAVAAES 68
                679****************98765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.6
                 -TTTG---...-EEEET--- CS
  PF00158.21  88 lfekadgG...tLfLDeige 104
                 lf  a++G    +fLDe+  
  MMETSP0890-20130614|7304_1  95 LFALAKKGapsAIFLDELDA 114
                 56666666333699999875 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0012      0.64       3      22 ..      47      66 ..      45      69 .. 0.89
   2 ?    0.9   0.0       0.5   2.7e+02      58     110 ..      80     131 ..      74     153 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0012
   PF05729.7  3 vilqGeaGsGKTtLlqklas 22
                ++l G++G GKT L++ +a 
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAVAA 66
                7899***********99875 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.5
   PF05729.7  58 LfsqlpepaapvsevwivllelperlLlilDglDelvsdlgqlkekqpvrtlL 110
                 L+s+++ +a++  +++  l++      ++lD lD + +  g+ +e +++r+ L
  MMETSP0890-20130614|7304_1  80 LTSKWLGEAEKLVRALFALAKKGAPSAIFLDELDAILARRGESSEHEASRR-L 131
                 66677766666666566666666666799******9999999444444444.4 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0002      0.11       1      21 [.      47      67 ..      47      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0002
  PF00910.17  1 iwlyGpsgeGKStlakeLaka 21
                i+lyGp+g+GK++la+ +a++
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARAVAAE 67
                789************998765 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00091       0.5      19      44 ..      43      68 ..      39     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00091
                .-SEEEEE--TT---HHHHHHHHHH- CS
  PF01637.13 19 pnsiiviyGprrsGKTaLlkeileel 44
                p s i++yGp ++GKT L + ++ e 
  MMETSP0890-20130614|7304_1 43 PPSGILLYGPPGTGKTLLARAVAAES 68
                566689************99998876 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00038      0.21     117     137 ..      47      67 ..      42      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00038
  PF01057.12 117 vwfyGpantGktnlaeaIaka 137
                 +++yGp+ tGkt la+a a  
  MMETSP0890-20130614|7304_1  47 ILLYGPPGTGKTLLARAVAAE 67 
                 89***************9875 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00088      0.48      22      38 ..      47      63 ..      37      71 .. 0.86
   2 ?   -1.3   0.0       1.5   8.2e+02      96     142 ..      83     131 ..      62     140 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00088
   PF06745.8 22 vlitGepGtGKtifalq 38
                +l++G pGtGKt++a  
  MMETSP0890-20130614|7304_1 47 ILLYGPPGTGKTLLARA 63
                89************975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.5
   PF06745.8  96 a.eedleelieklaeaikeikakrvviDsitgl.yeekeavaReilrql 142
                 +   ++e+l++ l    k+   +++ +D ++++  +  e+   e  r+l
  MMETSP0890-20130614|7304_1  83 KwLGEAEKLVRALFALAKKGAPSAIFLDELDAIlARRGESSEHEASRRL 131
                 4556778888888888888888999999998886554444444444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 1003.05
//
Query:       MMETSP0890-20130614|7306_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-11   41.8   0.6     0.0001   22.2   0.1    2.5  2  PF13499.1  EF-hand domain pair
    3.4e-10   38.3   0.2      6e-06   25.0   0.0    2.8  2  PF00036.27 EF hand
    3.2e-09   35.6   3.2    2.1e-05   23.5   0.1    3.0  3  PF13202.1  EF hand
    3.3e-08   32.6   0.6    0.00015   21.2   0.0    3.2  3  PF13405.1  EF-hand domain
    6.6e-06   25.5   0.8     0.0017   17.8   0.2    2.5  2  PF13833.1  EF-hand domain pair
    0.00057   19.7   1.2       0.26   11.2   0.3    2.6  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
       0.31   10.7   3.3       0.41   10.3   0.0    2.6  4  PF08680.5  Protein of unknown function (DUF1779)


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   5.3e-08    0.0001      38      63 ..      72      97 ..      42     100 .. 0.70
   2 !   17.5   0.0   1.6e-06     0.003      38      64 ..     123     149 ..     105     150 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 5.3e-08
   PF13499.1 38 vrevldyifkelDkngdGvlsfeEfl 63
                ++++l ++f e+D+n+dGv+s+eE++
  MMETSP0890-20130614|7306_1 72 MEKELSDFFSEADTNKDGVVSLEELR 97
                45567777****************97 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.6e-06
   PF13499.1  38 vrevldyifkelDkngdGvlsfeEflq 64 
                 ++e +++i+++lD+n dGvl+++E  +
  MMETSP0890-20130614|7306_1 123 SEERVRQILQDLDTNADGVLQRDEIIS 149
                 78999*******************875 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.1e-09     6e-06       1      28 [.      75     102 ..      75     103 .. 0.93
   2 !   10.4   0.0   0.00015      0.29       2      24 ..     127     149 ..     126     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                 el ++F+e+D+++dG +s+eE++ al+k
  MMETSP0890-20130614|7306_1  75 ELSDFFSEADTNKDGVVSLEELRIALRK 102
                 68899*******************9987 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00015
                 HHHHHHHHCTTTSSEBEHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfke 24 
                 ++++ + +D++ dG +  +E ++
  MMETSP0890-20130614|7306_1 127 VRQILQDLDTNADGVLQRDEIIS 149
                 799*****************875 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   4.7e+03      17      23 ..      42      48 ..      42      48 .. 0.84
   2 !   23.5   0.1   1.1e-08   2.1e-05       3      22 ..      78      97 ..      76     103 .. 0.92
   3 !   11.8   0.0   5.2e-05       0.1       3      21 ..     129     147 ..     127     151 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.4
                -HHHHHH CS
   PF13202.1 17 sreELkr 23
                ++eEL++
  MMETSP0890-20130614|7306_1 42 DAEELRK 48
                79***85 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.1e-08
                HHHHHH--S----B-HHHHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreELk 22
                d+F+++D+N+DG +s eEL+
  MMETSP0890-20130614|7306_1 78 DFFSEADTNKDGVVSLEELR 97
                89*****************7 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 5.2e-05
                 HHHHHH--S----B-HHHH CS
   PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                 ++++ +D+N DG + r+E 
  MMETSP0890-20130614|7306_1 129 QILQDLDTNADGVLQRDEI 147
                 6799*************96 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.5e-08   0.00015       2      28 ..      76     102 ..      75     110 .. 0.90
   2 !    8.2   0.0    0.0011       2.2       3      25 ..     128     150 ..     126     153 .. 0.85
   3 ?   -3.2   0.0       5.3     1e+04      20      27 ..     335     342 ..     334     344 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 7.5e-08
                 HH---GCC-------B---HHHHHHH. CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                 l ++F   D+++dG +++eELr aLrk
  MMETSP0890-20130614|7306_1  76 LSDFFSEADTNKDGVVSLEELRIALRK 102
                 6799*********************96 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0011
                 H---GCC-------B---HHHHH CS
   PF13405.1   3 reaFklfDkdgdGkidaeELrda 25 
                 r++ + +D++ dG + ++E++++
  MMETSP0890-20130614|7306_1 128 RQILQDLDTNADGVLQRDEIISI 150
                 6677789************9875 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 5.3
                 -HHHHHHH CS
   PF13405.1  20 eELrdaLr 27 
                 +E+ daLr
  MMETSP0890-20130614|7306_1 335 DEFDDALR 342
                 79999998 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   8.5e-07    0.0017      22      47 ..      71      96 ..      42     103 .. 0.82
   2 !    5.8   0.0    0.0047       9.1      22      48 ..     122     148 ..      99     150 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.5e-07
   PF13833.1 22 lseeevdilfrefDtdgdGkisfeEF 47
                + e+e+ + f+e+Dt++dG +s+eE 
  MMETSP0890-20130614|7306_1 71 VMEKELSDFFSEADTNKDGVVSLEEL 96
                56899*******************96 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0047
   PF13833.1  22 lseeevdilfrefDtdgdGkisfeEFc 48 
                  see v+ ++  +Dt+ dG +  +E +
  MMETSP0890-20130614|7306_1 122 ASEERVRQILQDLDTNADGVLQRDEII 148
                 46666****************999965 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   0.00014      0.26      35      84 ..      55     105 ..      31     112 .. 0.66
   2 !    7.4   0.0    0.0019       3.7      37      80 ..     108     151 ..      97     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
   PF10591.4  35 ehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksEla.plraplv 84 
                 e+   lek+  ++  + +++++   F++ Dtnkd+v+s +El+ +lr++lv
  MMETSP0890-20130614|7306_1  55 EEADMLEKSMAEERAAVMEKELSDFFSEADTNKDGVVSLEELRiALRKKLV 105
                 344445555566666667777777788888888888888888645677666 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0019
   PF10591.4  37 seelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplr 80 
                  e+  + +  +++   +e v+   ++lDtn+d+vl++ E+ ++ 
  MMETSP0890-20130614|7306_1 108 NENPRSADRYQQVLASEERVRQILQDLDTNADGVLQRDEIISIS 151
                 4455556666666677788888899**************98875 PP

>> PF08680.5  Protein of unknown function (DUF1779)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.7   3.2e+03      24      50 ..      46      70 ..      35      95 .. 0.51
   2 ?   -3.5   0.0       3.7   7.2e+03     177     189 ..      96     108 ..      91     110 .. 0.83
   3 ?   10.3   0.0   0.00021      0.41     131     169 ..     124     162 ..     113     182 .. 0.87
   4 ?   -0.3   0.0      0.38   7.4e+02     118     163 ..     325     370 ..     310     382 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.7
   PF08680.5 24 fekkvkslkaekeelewtessekdkka 50
                 +k + +l +e+  le+  ++e   +a
  MMETSP0890-20130614|7306_1 46 LRKQAAQLREEADMLEKSMAEE--RAA 70
                4444444444444444322222..222 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.7
   PF08680.5 177 lqvAlRskslgek 189
                 l +AlR+k ++e+
  MMETSP0890-20130614|7306_1  96 LRIALRKKLVEEN 108
                 7899**9988876 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00021
   PF08680.5 131 ekkakkllkeldAkkvesleeenfvSvSAyssklkesik 169
                 e++++++l++ld ++   l+ ++++S+S ++++l++  +
  MMETSP0890-20130614|7306_1 124 EERVRQILQDLDTNADGVLQRDEIISISGFKDRLEKIFR 162
                 6789*****************************987655 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.38
   PF08680.5 118 lkGelegkldkvlekkakkllkeldAkkvesleeenfvSvSAyssk 163
                  +G+l+ + +++  +  ++++++ +A +   +  +++ S SA ss+
  MMETSP0890-20130614|7306_1 325 GTGTLSKRFTDEFDDALRNIVSASSAAEFGLFIADSLNSTSATSSN 370
                 5899999999999999999*******99999999999999997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1063  (0.0777501); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.43s 00:00:01.24 Elapsed: 00:00:00.68
# Mc/sec: 1392.00
//
Query:       MMETSP0890-20130614|7310_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   10.3   5.8      0.073   11.5   2.4    1.4  1  PF09660.5 Protein of unknown function (DUF2397)


Domain annotation for each model (and alignments):
>> PF09660.5  Protein of unknown function (DUF2397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.4   5.3e-06     0.073     362     441 ..     168     246 ..     146     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-06
   PF09660.5 362 evsvrlrrrgrrerrgrearvrdrsaerrelaeqareeaeeeaaalaelatggkvrlselgvldpearrllLelLgkAla 441
                 +v  + r+   + +++   +v  r+++ +e + ++r+++e++a+ +++ +++g ++l++lg l  ++ +  L   ++A  
  MMETSP0890-20130614|7310_1 168 DVIEQCRQVEAARKQKNDEAV-QRKRKNEETRVDRRRKMEQIASGITRRIQRGDLQLENLGKLPADEIKCALIHFKEAVF 246
                 677788888888888888888.999********************************************99998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       979  (0.0716062); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.78
# Mc/sec: 992.34
//
Query:       MMETSP0890-20130614|7307_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   46.8  13.0    6.2e-09   35.5   2.2    5.1  4  PF12947.2  EGF domain
    6.3e-10   38.7  23.4    3.6e-08   33.1   4.3    6.6  7  PF07645.10 Calcium-binding EGF domain
     0.0038   17.0   3.9     0.0038   17.0   2.7    6.5  5  PF00008.22 EGF-like domain
  ------ inclusion threshold ------
      0.036   13.5   1.8      0.066   12.6   1.2    1.3  1  PF14163.1  Superinfection exclusion protein B


Domain annotation for each model (and alignments):
>> PF12947.2  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.6   2.7e-09   9.2e-06       4      31 ..     102     129 ..     100     130 .. 0.91
   2 !    5.0   0.6    0.0062        21       8      30 ..     197     238 ..     187     240 .. 0.70
   3 ?   -3.6   7.5         3     1e+04      18      36 .]     260     278 ..     244     278 .. 0.77
   4 !   35.5   2.2   1.8e-12   6.2e-09       1      34 [.     413     447 ..     413     448 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.7e-09
   PF12947.2   4 nnggCdpnAtCtntegsvtCtCksgykg 31 
                  ++ Cd +A+C nt gs++C+C++g+ g
  MMETSP0890-20130614|7307_1 102 WKHMCDSSASCVNTIGSYECACRNGTFG 129
                 5799********************9977 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0062
   PF12947.2   8 CdpnAtCtntegs...................vtCtCksgyk 30 
                 C ++ +C+++++s                   ++C C + y+
  MMETSP0890-20130614|7307_1 197 CPAHSSCIAVPESshpdmwassllsrsklrggFKCICDEPYY 238
                 55666666666645666777777778888888*****98887 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3
   PF12947.2  18 egsvtCtCksgykgdGvtC 36 
                      C+C ++ k  G+tC
  MMETSP0890-20130614|7307_1 260 SCPCDCHCVANEKEGGYTC 278
                 444568888********** PP

  == domain 4    score: 35.5 bits;  conditional E-value: 1.8e-12
   PF12947.2   1 CavnnggCdpnAtCtntegsvtCtCk.sgykgdGv 34 
                 C++ +  C pnA C+n  gs++CtC  +gy gdG+
  MMETSP0890-20130614|7307_1 413 CQEFKAACAPNALCQNLRGSYNCTCPtPGYIGDGR 447
                 8888999***************************6 PP

>> PF07645.10  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   4.3     1e-11   3.6e-08       1      32 [.      91     126 ..      91     135 .. 0.86
   2 ?   -6.3   4.6         4   1.4e+04       2      28 ..     168     187 ..     160     194 .. 0.48
   3 ?   -0.3   0.3      0.29   9.9e+02       5      19 ..     191     204 ..     188     206 .. 0.76
   4 !    7.5   0.9    0.0011       3.7      22      36 ..     226     241 ..     224     247 .. 0.74
   5 !    8.5   3.4    0.0005       1.7       2      34 ..     253     285 ..     252     296 .. 0.75
   6 ?   -3.6   0.1         3     1e+04      17      26 ..     366     375 ..     365     375 .. 0.85
   7 !   20.2   6.4   1.1e-07   0.00039       1      33 [.     403     442 ..     403     453 .. 0.73

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1e-11
  PF07645.10   1 DvdECas....gthnCpentvCvNteGsfeCvCeeg 32 
                 D++EC++     +h+C+++++CvNt+Gs+eC C++g
  MMETSP0890-20130614|7307_1  91 DTNECTTddpnWKHMCDSSASCVNTIGSYECACRNG 126
                 99***98543235*********************98 PP

  == domain 2    score: -6.3 bits;  conditional E-value: 4
  PF07645.10   2 vdECasgt..hnCpentvCvNteGsfeCv 28 
                 +d C+ ++  + C ++          +Cv
  MMETSP0890-20130614|7307_1 168 FDRCDVEScvKTCVSDF---------KCV 187
                 33343332223444444.........444 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.29
  PF07645.10   5 CasgthnCpentvCv 19 
                 C   +++Cp++++C+
  MMETSP0890-20130614|7307_1 191 CHV-AAMCPAHSSCI 204
                 555.459*9999997 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0011
  PF07645.10  22 eGsfeCvCeegye.nn 36 
                  G+f+C C+e y   +
  MMETSP0890-20130614|7307_1 226 RGGFKCICDEPYYeDD 241
                 6********9987333 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0005
  PF07645.10   2 vdECasgthnCpentvCv..NteGsfeCvCeegye 34 
                 vd Ca+  h+Cp + +Cv   +eG+++C+ ++g++
  MMETSP0890-20130614|7307_1 253 VDLCAN--HSCPCDCHCVanEKEGGYTCSPDKGFK 285
                 566887..678888999731468**********99 PP

  == domain 6    score: -3.6 bits;  conditional E-value: 3
  PF07645.10  17 vCvNteGsfe 26 
                 +C  ++G+f+
  MMETSP0890-20130614|7307_1 366 QCLSEIGTFN 375
                 79999**996 PP

  == domain 7    score: 20.2 bits;  conditional E-value: 1.1e-07
  PF07645.10   1 DvdEC......asgthnCpentvCvNteGsfeCvCe.egy 33 
                 DvdEC      +++++ C+ n+ C+N  Gs++C+C+ +gy
  MMETSP0890-20130614|7307_1 403 DVDECsydgqcQEFKAACAPNALCQNLRGSYNCTCPtPGY 442
                 77776222211567889999***************83466 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.7   1.1e-06    0.0038       4      31 ..     101     130 ..      95     132 .. 0.88
   2 ?   -1.8   0.6      0.82   2.8e+03       1      12 [.     186     197 ..     186     198 .. 0.79
   3 !    8.7   0.0   0.00043       1.5      17      29 ..     226     238 ..     199     241 .. 0.85
   4 ?   -7.6   7.2         4   1.4e+04       1      22 [.     256     278 ..     256     279 .. 0.84
   5 !   10.6   5.7   0.00011      0.39       6      31 ..     407     445 ..     402     447 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-06
                 T...TCSS--EEEEECCTEEEEE--TTCTTT CS
  PF00008.22   4 n...pCsngGtCvdtpgggytCeCpeGytGk 31 
                 n    C+  + Cv+t  g+y+C C  G  Gk
  MMETSP0890-20130614|7307_1 101 NwkhMCDSSASCVNTI-GSYECACRNGTFGK 130
                 46668***********.**********8886 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.82
                 TTTTTCSS--EE CS
  PF00008.22   1 CspnpCsngGtC 12 
                 C ++pC+  + C
  MMETSP0890-20130614|7307_1 186 CVQDPCHVAAMC 197
                 9999**975555 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00043
                 CTEEEEE--TTCT CS
  PF00008.22  17 gggytCeCpeGyt 29 
                 +gg++C+C e+y 
  MMETSP0890-20130614|7307_1 226 RGGFKCICDEPYY 238
                 79*********85 PP

  == domain 4    score: -7.6 bits;  conditional E-value: 4
                 TTTT..TCSS--EEEEEC.CTEEEE CS
  PF00008.22   1 Cspn..pCsngGtCvdtp.gggytC 22 
                 C+ +  pC+    Cv  + +ggytC
  MMETSP0890-20130614|7307_1 256 CANHscPCDC--HCVANEkEGGYTC 278
                 6667778888..99999999***** PP

  == domain 5    score: 10.6 bits;  conditional E-value: 0.00011
                 CSS--EEEEEC............CTEEEEE--TT.CTTT CS
  PF00008.22   6 CsngGtCvdtp............gggytCeCpeG.ytGk 31 
                 Cs +G+C++              +g+y+C+Cp + y G+
  MMETSP0890-20130614|7307_1 407 CSYDGQCQEFKaacapnalcqnlRGSYNCTCPTPgYIGD 445
                 666666666666666666666666********9987774 PP

>> PF14163.1  Superinfection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   1.9e-05     0.066      13      55 ..     593     635 ..     590     644 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.9e-05
   PF14163.1  13 lflPksllellnldefltkyapwlgliflisvaylivqllski 55 
                   +Pks+l+ l ++++++   + +++ f++s+++l+++ll+ +
  MMETSP0890-20130614|7307_1 593 TAVPKSMLDQLTAGNVAHVLTQTMWYTFILSISLLLALLLWTL 635
                 568**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.90
# Mc/sec: 1893.12
//
Query:       MMETSP0890-20130614|7311_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-35  121.4   0.0    3.2e-34  117.7   0.0    2.3  2  PF00270.24 DEAD/DEAH box helicase
    2.6e-22   78.3   0.0    4.9e-21   74.2   0.0    2.5  2  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.041   13.3   1.5        1.8    7.9   0.6    3.0  2  PF13086.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0     7e-38   3.2e-34       1     171 [.     105     271 ..     105     273 .. 0.86
   2 ?    0.9   0.0     0.053   2.4e+02      45     106 ..     346     405 ..     292     414 .. 0.72

  Alignments for each domain:
  == domain 1    score: 117.7 bits;  conditional E-value: 7e-38
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEE.TTSSB.HHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlli.iggva.lardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 171
                 tp+Q++a+p++l g dv + a++GsGKTla+l+p   +ll     ++ ++a++++PtreLa+q+++ ++ ++k    r+ ++  gg+  + + ++++ +  + ++v+Tpgrl +l  +   ++s+vr+++lDEad++++ gf++ql+ i+++ +  + +q ++++AT+p++++
  MMETSP0890-20130614|7311_1 105 TPVQRQAWPAALAGFDVTAIAPVGSGKTLAYLLPTATRLLLA---KNFEQAIVLSPTRELAQQICRVASGIFKREYQREIILiAGGTGaQGKAEQRRACTSACLIVATPGRLAELAPA---KMSRVRIFILDEADKMMKFGFEPQLDCIVKRFSFRNTRQHLLFTATFPQKLR 271
                 89**********************************999874...4678************************95556555524444332223344446779*************886...6899****************************99999***********8765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.053
                 TTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH....T..-SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
  PF00270.24  45 kttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl....dngvdivvgT 106
                 +++ +k+li+a     + + +++lk+       + ++++g++++a +++  l     ++v i+++T
  MMETSP0890-20130614|7311_1 346 RRQASKVLILANKATTVDELATQLKSHY-----SLAIMHGKKPQA-ERNAALngfrAGKVAILIAT 405
                 3344477777777777777776666655.....457788888877.66666678998899999998 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.079   3.6e+02      12      34 ..     261     283 ..     252     296 .. 0.78
   2 !   74.2   0.0   1.1e-24   4.9e-21       5      76 ..     370     441 ..     367     442 .. 0.97

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.079
                 EE-TTS-HHHHHHHHHHHHTTTS CS
  PF00271.26  12 ilhgelpqnereeileqfnagks 34 
                  +++  pq+ re+i e+f + ++
  MMETSP0890-20130614|7311_1 261 LFTATFPQKLREAISERFSTIDR 283
                 577889************98665 PP

  == domain 2    score: 74.2 bits;  conditional E-value: 1.1e-24
                 H----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------ CS
  PF00271.26   5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgR 76 
                 k +++ ai+hg+ pq er++ l+ f+agk  +l+at+va+rG+d++++++ +n+d+p + + y +r+GR+gR
  MMETSP0890-20130614|7311_1 370 KSHYSLAIMHGKKPQAERNAALNGFRAGKVAILIATDVAGRGLDVKGLRFLVNWDFPPNLDIYTHRLGRIGR 441
                 567999****************************************************************** PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.6    0.0004       1.8      30      82 ..     326     372 ..     105     407 .. 0.86
   2 ?    3.0   0.0     0.013        59      45      67 ..     521     549 ..     412     558 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0004
   PF13086.1  30 KtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlleldeegkk 82 
                 +t+ ++ ++ +l++++ + ++++  +vL+ a+  + vDe++ +l +      +
  MMETSP0890-20130614|7311_1 326 RTRLLIRFLEKLKQSDRAHHRRQASKVLILANKATTVDELATQLKS------H 372
                 4677777888888888999************************998......2 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.013
   PF13086.1  45 k......seseakkkkrvLvcapsnaavD 67 
                 k      +e+++k+ k+  +ca+sn++ D
  MMETSP0890-20130614|7311_1 521 KedvdimQEKKKKRRKKTEYCAKSNSSKD 549
                 03444445666667777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:01.47
# Mc/sec: 927.57
//
Query:       MMETSP0890-20130614|7313_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    7.8  11.7        2.2    7.3   8.1    1.2  1  PF01299.12 Lysosome-associated membrane glycoprotein (Lamp)
        4.8    5.6   9.5        6.9    5.1   6.6    1.2  1  PF00973.14 Paramyxovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> PF01299.12  Lysosome-associated membrane glycoprotein (Lamp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.1   0.00032       2.2       9     102 ..     216     307 ..     209     324 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00032
  PF01299.12   9 synlsdttlfPnatskgvktvtsstaikaplnttyrcvssttvemenvtvtlsdvtl.qaylqnstlskeetrceed.pspttsatpvPsPtpvps 102
                 s+n  ++   Pn  +   ++  ++++++ p++t    +++    ++n+t+++++ +l ++ +++ + s +  + +++ ++p+++++p+P+P+  ps
  MMETSP0890-20130614|7313_1 216 SQNKEKKASVPNDDDRRQES--HENDTSLPTTT-RSASHQNHEDKKNATQKYKEKKLlKRQVESRESSDDDETITATtTTPAPAKPPSPPPS-SPS 307
                 56777777888777777766..45568888744.4444555567889*****9988526778887777765555555578888888999888.332 PP

>> PF00973.14  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.6     0.001       6.9     418     509 ..     191     283 ..     155     294 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.001
  PF00973.14 418 sflrsdrs..eeeqkraskkeekrekqsrkearesskedkkkeatdeeaaslsketlldvdttsesdedpleskksaeallklralakiledse 509
                  +l+ +++  +++ +r+ +++++r++q+++++ +  ++d ++++++e+++sl ++t+   ++++e++++ +++ k  + llk +  ++ ++d++
  MMETSP0890-20130614|7313_1 191 EILHFEQQhlDQKATRLRQRKQRRQSQNKEKKASVPNDDDRRQESHENDTSLPTTTRSASHQNHEDKKNATQKYK-EKKLLKRQVESRESSDDD 283
                 345555541144445555666666666666655555666666666777777777777766666666666444433.344555554444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1496  (0.109421); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:01.31
# Mc/sec: 658.54
//
Query:       MMETSP0890-20130614|7316_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.69
# Mc/sec: 194.49
//
Query:       MMETSP0890-20130614|7314_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-33  111.8   0.0    4.5e-16   58.4   0.0    2.0  2  PF00166.16 Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> PF00166.16  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   3.7e-18   5.1e-14      10      90 ..       2      83 ..       1      86 [. 0.91
   2 !   58.4   0.0   3.3e-20   4.5e-16       2      91 ..      97     188 ..      96     190 .. 0.93

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 3.7e-18
  PF00166.16 10 lveraeeeektkggiilpdsakekplqGeVvaVGeGarnekgekvpeevkv.GdkVllpkysGtkvkvegkeyvvlkekdIl 90
                l+++a+  + t+gg++lp++akekp++G+Vva G+G++  +   + ++v + G +Vl+ k++Gt  k  g+++ +++++d+l
  MMETSP0890-20130614|7314_1  2 LIKVASTVDATSGGVLLPEKAKEKPTEGIVVACGPGRIHPDTAFLMKTVIPvGSRVLYGKFDGTPLKYCGEDHQLIRDDDVL 83
                7888888899*****************************8888766666655****************************98 PP

  == domain 2    score: 58.4 bits;  conditional E-value: 3.3e-20
  PF00166.16   2 ikplgdrVlveraeeeektkggiilp..dsakekplqGeVvaVGeGarnekgekvpeevkvGdkVllpkysGtkvkvegkeyvvlkekdIla 91 
                  +p+ drVl+++ ++e+ t  gi l+   ++++k++ G+Vv +GeG+  ++ge vp+ v+ G+   + +y+G+++k+ g+++v ++ +  la
  MMETSP0890-20130614|7314_1  97 ATPIRDRVLLKVTKAEDVTTTGIALApgVAQQQKTSIGQVVKLGEGRLSSTGEVVPMPVEIGQFLKYRDYAGSDIKIGGEDFVCIRIDAALA 188
                 68***********************99777888**************************************************999877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:01.44
# Mc/sec: 321.18
//
Query:       MMETSP0890-20130614|7317_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       976  (0.0713868); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.83
# Mc/sec: 383.99
//
Query:       MMETSP0890-20130614|7318_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-08   32.3   0.0      8e-08   31.7   0.0    1.4  1  PF01261.19 Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> PF01261.19  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   5.8e-12     8e-08       2     189 ..       8     184 ..       7     227 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 5.8e-12
                 HHHHHTT--EEEEECHHHCGSTHCCHHHHHHHHHHHHHT-EEEEEEEECTTTTTTGC.....TTCCSSHHHHHHHHHHHHHHHHH---EEEEEE-SS.SS--HHCHHHHHHHHHHHHHHHHHHHHHTT-EEEEE--STTTTSSHSSHHHHHHHHHHCCTTEEEEEEHHHHHHHTSTHHHHHHHHHHH....CEEEEE CS
  PF01261.19   2 eaaaeaGfdgvElfgdglvpvseldeelrelrklldelglriasiefstrfaylded.....ereardeekavaalkraielAkrlGaplvvvhpGgagagakgseaealerlaealnelaeyaeeaGvklaiEnhpgegvedgyseelaalldavdspnvgvclDtgHliiagfdpddairrladr....ikhvHl 189
                 ++++++G+ g+E +  +  + +   ee   +r++ld +gl +   ++s+   y + +     +      +  +  + +++e Ak+l    ++ h+G       ++  e+ e l ++  ++ae +      +++E+h g + ++     +++ll++++   + ++ D++H+ ia ++p+++i  + +       h+H+
  MMETSP0890-20130614|7318_1   8 SRLRAIGYAGIECSLLDCGDDD---EERMHFREALDLHGLDLIISCYSSWVDYEGPSpqtpaNI-----QSELQVFSEELEKAKKLAPIKINAHVG----SDLWPNFEDHEALFAGCLQVAEGF----PNICFETHRGRPLGHP--TNALRLLSKFPQ--LTLTGDFSHWSIAVERPLREISTALKVaiprCQHIHA 184
                 6899*********999888886...7***************55554444444443333333333.....666**************9999****99....223333344455555555554444....57**************..***********8..*************999999999998888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.96
# Mc/sec: 649.01
//
Query:       MMETSP0890-20130614|7320_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   69.9   0.0    1.8e-19   69.4   0.0    1.3  1  PF03479.10 Domain of unknown function (DUF296)


Domain annotation for each model (and alignments):
>> PF03479.10  Domain of unknown function (DUF296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.3e-23   1.8e-19      36     119 ..       2      83 ..       1      84 [. 0.92

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 1.3e-23
  PF03479.10  36 Gavsnvtlrqpde..assggtltlegrfEIlslsGtilpgsggpsghlhvslagpdgqvvGGhlaeglliaaaevvvvalsfnnar 119
                 G+v++vtlr+ ++   + ++ +tl+ rfEIlsl Gt+ +  +g+  hlh+sla+++g++vGGhl+++ ++++ae+v+   ++ ++r
  MMETSP0890-20130614|7320_1   2 GSVEEVTLRLANAdrHKPNEIITLRRRFEILSLVGTLCS--DGA--HLHMSLADSEGKCVGGHLISARVFTTAEIVLNTHPNISFR 83 
                 9*********99897677999*****************9..676..*******************************988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.30s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 556.44
//
Query:       MMETSP0890-20130614|7322_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   11.6   0.3        0.1   11.4   0.2    1.0  1  PF05559.6 Protein of unknown function (DUF763)
       0.35   10.4   5.0        0.4   10.2   3.5    1.1  1  PF08648.7 Protein of unknown function (DUF1777)
       0.65    8.4  10.8       0.81    8.1   7.5    1.0  1  PF10446.4 Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF05559.6  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   2.2e-05       0.1     163     236 ..      22      94 ..      16     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   PF05559.6 163 lARRYHwlsekvesfveephsaisgkkeeevlnlvdkeseearklivdlvregpskivreveelkeklkgeele 236
                   RR+    e+++ ++e++++ i  +k++ +l + d++ +++    vd +++ +  i +e+++++++ ++++++
  MMETSP0890-20130614|7322_1  22 SGRRHDIEGEEMRMEIEKSQKRIRKEKNNDILAMDDEDLDDISDEEVDEIEDXS-GICQETNTTNDADNTRNTI 94 
                 679999********************************************9986.5666666665555542222 PP

>> PF08648.7  Protein of unknown function (DUF1777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.5   8.8e-05       0.4      82     150 ..      23      92 ..      10     106 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8.8e-05
   PF08648.7  82 errrdRkeerekkakepekkrerqksvdgvkeikeedlegksedevemmk.lmGfsgFdttkgkkvdgad 150
                  rr+d + e+ + + e+++kr r+++ +    +++edl+  s++ev+++    G++    t++   +  +
  MMETSP0890-20130614|7322_1  23 GRRHDIEGEEMRMEIEKSQKRIRKEKNNDILAMDDEDLDDISDEEVDEIEdXSGICQETNTTNDADNTRN 92 
                 4556666666666667788899999999999******************9899**887666665554444 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.5   0.00018      0.81      30      95 ..      33      98 ..      30     109 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00018
   PF10446.4 30 dtlkkelairklgeeaeeealeeedededdeeddddeDeddddddddeDdeddelddddstladas 95
                +++++e+  +++ +e++++ l  +ded dd +d++ ++ +d  +  +e + +++ d+  +t++++s
  MMETSP0890-20130614|7322_1 33 MRMEIEKSQKRIRKEKNNDILAMDDEDLDDISDEEVDEIEDXSGICQETNTTNDADNTRNTISYNS 98
                89**********************999999999886555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       974  (0.0712405); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 395.92
//
Query:       MMETSP0890-20130614|7319_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-41  141.1   0.3    9.8e-41  138.6   0.1    2.1  2  PF00899.16 ThiF family
    2.7e-18   65.2   0.0    5.9e-18   64.1   0.0    1.5  1  PF05237.8  MoeZ/MoeB domain
    3.3e-08   33.7   0.0      9e-08   32.3   0.0    1.8  1  PF00581.15 Rhodanese-like domain
    0.00096   18.1   0.8     0.0021   16.9   0.6    1.5  1  PF03435.13 Saccharopine dehydrogenase
      0.002   18.1   0.1     0.0045   16.9   0.1    1.6  1  PF01488.15 Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.1   3.6e-44   9.8e-41       1     132 [.      62     195 ..      62     198 .. 0.97
   2 ?   -0.3   0.0      0.28   7.8e+02      17      40 ..     374     397 ..     352     400 .. 0.85

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 3.6e-44
  PF00899.16   1 keskvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeri..teenleellkdvDlvvdalDniearlllndacvkkgkplisagvlgfkgqv 132
                 k+++vl+vGaGglGs+a+++La+aGvg++t++D+D+v++sNl+Rq++++++ vgk K+ +a++ +++inp v+v+ +++r+    e++  l++++D+v+d++Dn+ +++l+++acv+ g+p i+a++l+f+gq+
  MMETSP0890-20130614|7319_1  62 KSASVLCVGAGGLGSPAIMYLAAAGVGHITIIDDDVVDYSNLQRQIIHDTALVGKAKTASAAASVKRINPFVQVTEIQARLgpAVEDAVALIQGHDVVLDGSDNFPTKFLIDEACVQAGVPNIYAAILRFEGQA 195
                 5789*****************************************************************************988999999******************************************98 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.28
  PF00899.16  17 aaeaLaraGvgkltlvDkDtvels 40 
                 a+eaLa++G+ +l   D +   +s
  MMETSP0890-20130614|7319_1 374 ACEALAALGFSRLYHLDGGILAWS 397
                 789999999999999998776655 PP

>> PF05237.8  MoeZ/MoeB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.1e-21   5.9e-18       3      76 ..     205     282 ..     203     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 2.1e-21
   PF05237.8   3 tpCyrClfpep..pesvpsCaeaGVlgpvvgvigslqaleAiKlltgi..geplsgrLllfdalsmefrkirlrrdpe 76 
                 +  yr+l+p+   p++vpsCae+GVlg+++gv+g++qa+eAiK++++     +l+ r l++da++m+f+++ l ++++
  MMETSP0890-20130614|7319_1 205 GTRYRDLLPTAppPGAVPSCAEGGVLGVLCGVLGAIQATEAIKVILEEppHLTLADRVLCYDAKTMTFKQLPLTPQKN 282
                 567*******999*********************************8855566788***************9997665 PP

>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.3e-11     9e-08      13     112 ..     319     398 ..     307     399 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.3e-11
  PF00581.15  13 kvvllDvRspeeyekghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdGGfeawka 112
                 ++ +lDvR p+e e   +p    + +                ++l ++++ l++++ ++++c+sg rs+ a+++     l++lg+ + y+LdGG+ aw++
  MMETSP0890-20130614|7319_1 319 DPFVLDVRLPQEAEIASLPFTDALCP---------------HRQLHQVAQNLPQDRDILIFCKSGFRSRIACEA-----LAALGFSRLYHLDGGILAWSE 398
                 56678888888877777776633333...............47899****************************.....8899***************97 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   7.8e-07    0.0021       1      99 [.      66     188 ..      66     211 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.8e-07
  PF03435.13   1 vlvlGaGsvGqavaellarhgdvdeitvadrtlekaqalaaka.......................lglrveaialdvsnyea.Leallkegdlvvnlappi.lsltvlkaCietgvhyvdtsy 99 
                 vl++GaG+ G++++ +la+ g   +it++d +     +l  ++                         + v+ i+     + +  +al++++d+v++ + ++ +   + +aC+++gv  + +++
  MMETSP0890-20130614|7319_1  66 VLCVGAGGLGSPAIMYLAAAGVG-HITIIDDDVVDYSNLQRQIihdtalvgkaktasaaasvkrinPFVQVTEIQARLGPAVEdAVALIQGHDVVLDGSDNFpTKFLIDEACVQAGVPNIYAAI 188
                 89*****************9865.********999999999999999************999988866666666666665555599999999**********8888999*******97666555 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.6e-06    0.0045       9      43 ..      60      94 ..      54     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.6e-06
                ...--EEEEE----HHHHHGGG--TTT-E.EEE-- CS
  PF01488.15  9 slkgkkvlviGAGemarlvakhLlekgvkkiviaN 43
                +lk+++vl +GAG+ +  ++ +L++ gv +i+i+ 
  MMETSP0890-20130614|7319_1 60 KLKSASVLCVGAGGLGSPAIMYLAAAGVGHITIID 94
                589******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.43s 00:00:01.14 Elapsed: 00:00:01.11
# Mc/sec: 878.66
//
Query:       MMETSP0890-20130614|7321_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.2   0.1       0.05   13.0   0.1    1.7  1  PF07219.8  HemY protein N-terminus
       0.13   11.9   0.1       0.33   10.6   0.1    1.6  1  PF02187.12 Growth-Arrest-Specific Protein 2 Domain


Domain annotation for each model (and alignments):
>> PF07219.8  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   7.3e-06      0.05      53     102 ..     558     607 ..     545     609 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.3e-06
   PF07219.8  53 rrkrrrgrkalseGllalaeGdwakAerlarkaaeledqpelalllaara 102
                   k ++  k l +++ ++a Gd +kA+ l++  ++l+++p++a+++  +a
  MMETSP0890-20130614|7321_1 558 LSKLDQPTKELWDAICDIAGGDIRKAQELIKDPDALQENPKIAAIISKQA 607
                 4588899999************************************8887 PP

>> PF02187.12  Growth-Arrest-Specific Protein 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   4.9e-05      0.33      31      57 ..     209     235 ..     204     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.9e-05
  PF02187.12  31 RvgdsklLilvrilrstvmvRvGGGWe 57 
                 Rvg+  +L   r   + vmvRvGG W+
  MMETSP0890-20130614|7321_1 209 RVGGIVRLTPTRAGGEAVMVRVGGKWD 235
                 66777777777778899*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:00.88
# Mc/sec: 1658.39
//
Query:       MMETSP0890-20130614|7324_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-13   50.0   8.8    6.9e-13   48.6   0.0    2.7  3  PF08190.7 pre-RNA processing PIH1/Nop17


Domain annotation for each model (and alignments):
>> PF08190.7  pre-RNA processing PIH1/Nop17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0     5e-17   6.9e-13      85     180 ..       1      91 [.       1     120 [. 0.85
   2 ?   -1.2   0.0     0.068   9.3e+02     297     321 ..     179     202 ..     170     209 .. 0.66
   3 !    4.0   2.1    0.0019        26     202     274 ..     319     383 ..     264     399 .. 0.67

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 5e-17
   PF08190.7  85 qpreekdkkgkpckvyDvvfnpdtlqkaekdkefrkflialaleaieqkyevtLnreelkvlkfkykGslepqrirlkkpkkeenakdrlidaklp 180
                 qpr e+d+k ++c+v Dv +n++ l+ +  + e +  l    ++ +++ky+++L+ +++k++k++ykG +e++ +r ++  k+++  d    + ++
  MMETSP0890-20130614|7324_1   1 QPRRETDNKLATCVVLDVLINTKYLHELIATIEGKHWLSLFIIDRVSSKYNINLD-KNYKLPKLRYKGIPEQHPQRIRDDSKKPKIID----ETQQ 91 
                 89*****************************************************.************99999999988887776555....2221 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.068
   PF08190.7 297 rLdlkLpypvdeeeaeAkFnkkkkt 321
                  L+lkLpy v   +a+A++  +++ 
  MMETSP0890-20130614|7324_1 179 PLKLKLPYSVTY-QATATYAEDSQS 202
                 478888888864.566777766665 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0019
   PF08190.7 202 sektqeaskkaksklieeiesaeiqspeptkpeysvkaegvvdlslfkdsrdsk.segvpkelvieieLPgvks 274
                 ++++++ ++++k++ +++i+++  q+++  +++y       +dl++ k+ +++  ++++ +++++e ++ + +s
  MMETSP0890-20130614|7324_1 319 QHNISQRKEQEKERRQNSISNQ--QKENNDNVQY-------LDLKDKKEDSNALnENNIASSFALEEKISDSRS 383
                 2223555555555555556655..4444466666.......888888888888877788777777755555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1384  (0.101229); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:01.07
# Mc/sec: 922.71
//
Query:       MMETSP0890-20130614|7323_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-25   88.1   0.0    7.9e-25   87.1   0.0    1.5  1  PF00899.16 ThiF family
  ------ inclusion threshold ------
       0.06   13.3   0.0       0.21   11.5   0.0    1.9  2  PF01488.15 Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.2e-28   7.9e-25       4     132 ..     319     468 ..     316     471 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 1.2e-28
  PF00899.16   4 kvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgk..pKaevakerlreinpeveveaveeri....................teenleellkdvDlvvdalDniearlllndacvkk.gkplisagvlgfkgqv 132
                 ++l++GaG+lG+ +a++L+++G++++t+vD++ v +sN  Rq l++ +d+ +  +Ka +a+++l++i+p+ ++++  +r+                    +  +l +l++++D v+  +D++ear+l + ++++  ++p + + +lg ++ v
  MMETSP0890-20130614|7323_1 319 SCLLLGAGTLGCCVARTLIGWGIRNITFVDNGYVAYSNPARQWLYTVSDCAQntSKAVAAAKALEQIAPNSTASP--SRFtgvqltipmpghslteneikDITRLAQLIESHDHVFVLTDTREARWLPTLLATAApNQPTVLNVGLGLDTFV 468
                 79************************************************55459**************887666..3333356677*********999999999**********************9985555426788888888877766 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.1e-05      0.21       8      41 ..     313     346 ..     308     349 .. 0.88
   2 ?   -2.5   0.0      0.66   4.5e+03      62      89 ..     414     441 ..     408     460 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.1e-05
                 ....--EEEEE----HHHHHGGG--TTT-E.EEE CS
  PF01488.15   8 eslkgkkvlviGAGemarlvakhLlekgvkkivi 41 
                 +++++ + l++GAG  +  va++L+ +g+++i+ 
  MMETSP0890-20130614|7323_1 313 DKVSTISCLLLGAGTLGCCVARTLIGWGIRNITF 346
                 56778899***********************985 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.66
                 EE---S-HHHHHHT-SEEEE-S--SS-S CS
  PF01488.15  62 ealpleeleellaeadvvisatsapepi 89 
                 e+  ++ l +l++  d v+  t+  e +
  MMETSP0890-20130614|7323_1 414 EIKDITRLAQLIESHDHVFVLTDTREAR 441
                 6778888889999999999888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:01.37
# Mc/sec: 1126.46
//
Query:       MMETSP0890-20130614|7326_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-13   48.4   0.0    1.1e-12   47.5   0.0    1.4  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    3.1e-08   33.3   0.0    1.2e-07   31.5   0.0    2.0  2  PF13409.1  Glutathione S-transferase, N-terminal domain
    2.4e-07   30.5   0.0    3.9e-07   29.8   0.0    1.3  1  PF00043.20 Glutathione S-transferase, C-terminal domain
     0.0024   17.9   0.0      0.058   13.5   0.0    2.5  2  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.2e-16   1.1e-12       2      66 ..     182     254 ..     181     255 .. 0.92

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.2e-16
                 HHHS--GGGTT-THGGG------SS...-------HHHHHHHHHHHHHHHHH---......---TT----HHH CS
   PF13410.1   2 aaleraraqlraaLdaleahLadgp..fllGdrpslaDialapflvrldaagpgl......direayPnlraw 66 
                 +a++ra++ l++aL +le+ La+++  fllGd+ +  D +l+p++ r+da++  l       i + yPnl +w
  MMETSP0890-20130614|7326_1 182 TAYDRAERNLHSALQQLESTLAASShrFLLGDKVTESDLRLFPTISRFDACYATLfrcgrkLINSHYPNLSKW 254
                 799************************************************8766677777777999***999 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.4e-11   1.2e-07       1      67 [.      43     136 ..      43     139 .. 0.72
   2 ?   -2.3   0.0       1.2     4e+03      16      47 ..     263     291 ..     254     296 .. 0.66

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3.4e-11
                 --HHHHHHHHHHHH----EEEEEEH....TT.........................SHHHHHHHH-.-----SEEE.----..EEESHHHHHHHH CS
   PF13409.1   1 acPwahRvlialalkgledeisvvplepkgf.........................ekseellals.prgtVPvLwdkdgt..vineSseIlryl 67 
                 acPw+hR+ + lal g ++ i v+ le++++                         +++ ++++++ +r t P+L+  +++  ++ eS +Ilr +
  MMETSP0890-20130614|7326_1  43 ACPWCHRTTLGLALRGFPSNIGVTELEDDPErasrggwivksgidpifgmpdlkqiYDK-AFPQANyGRATAPLLIEVNSKtaISSESGDILRAI 136
                 7**********************866666664444444555545554544444444332.5688887899******8755565888*******87 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.2
                 ---EEEEEEH....TTSHHHHHHHH------S CS
   PF13409.1  16 gledeisvvplepkgfekseellalsprgtVP 47 
                 g+ d+i+v  +  ++++    l  l+p+g +P
  MMETSP0890-20130614|7326_1 263 GVSDTIDVAAA-ARSYYS--SLFPLNPSGIIP 291
                 67777766533.444443..588888888887 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.1e-10   3.9e-07      20      91 ..     178     258 ..     155     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..TSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.......HTT-HHHHHHHHHH CS
  PF00043.20  20 ekdeaeveeakrkvlevlealeeels..gkkylvGdkltlADialfpalewlqrldgnfl.......eeefPklkawlkri 91 
                  + ++++++a+r + ++l++le +l+     +l Gdk+t  D+ lfp +  +++   +++        + +P+l++w+ ++
  MMETSP0890-20130614|7326_1 178 ASTQTAYDRAERNLHSALQQLESTLAasSHRFLLGDKVTESDLRLFPTISRFDACYATLFrcgrkliNSHYPNLSKWRVNL 258
                 55688********************************************977666666666668888**********9776 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05     0.058       1      68 [.      38     137 ..      38     144 .. 0.53
   2 ?   -3.5   0.0       3.5   1.2e+04      37      49 ..     280     292 ..     271     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
                 EE--TTSHHHHHHHHHHHH----EEE----.........................TTTT...HHHHHHH-.TT--SSEEE.--.--.EEESHHHHHHHHH CS
   PF13417.1   1 LygspfSpyarkvrlaLeekglpyelvevt.........................pgkk...rpellaln.pkgkvPvLe.dd.ge.vltdSlvIieyLe 68 
                 Ly  +++p++++  l L ++g p ++  +                          p+ k   ++++ + n ++ + P L+  +  + + ++S +I++ + 
  MMETSP0890-20130614|7326_1  38 LYVGNACPWCHRTTLGLALRGFPSNIGVTEleddperasrggwivksgidpifgmPDLKqiyDKAFPQANyGRATAPLLIeVNsKTaISSESGDILRAIC 137
                 8999******************988744441122233333333333333322222111122234444444466666666424433323346666666665 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.5
                 HHHHH-TT--SSE CS
   PF13417.1  37 ellalnpkgkvPv 49 
                 +l  lnp g +P+
  MMETSP0890-20130614|7326_1 280 SLFPLNPSGIIPA 292
                 5778999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.84
# Mc/sec: 964.25
//
Query:       MMETSP0890-20130614|7325_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.5   0.0    2.4e-07   30.5   0.0    1.6  1  PF13899.1  Thioredoxin-like
  ------ inclusion threshold ------
      0.043   13.7   0.0        0.1   12.5   0.0    1.7  1  PF00789.15 UBX domain
      0.053   12.9   0.0       0.22   11.0   0.0    2.1  1  PF01011.16 PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   5.4e-11   2.4e-07       4      82 .]     146     241 ..     143     241 .. 0.67

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 5.4e-11
   PF13899.1   4 sdldealakareegkpllvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanl......eldr..........qg.....vPvvvfldp 82 
                  d+ +a++ a+ee k+llv +++ +++d+ +l+rdv+ de+v+a+++++f+l+    +  ++ +      +  r           +      P+++++dp
  MMETSP0890-20130614|7325_1 146 GDFQSARKLAKEERKWLLVSITD-DSFDSARLNRDVWGDETVQAVVESQFILWI-RNKLDNEAIvyadryD--RdrtviypgsnMYrihpkHPHLAVIDP 241
                 58999***************996.589*****************9999999864.4433333333333222..122333322321144556666666665 PP

>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05       0.1      22      72 ..     363     414 ..     339     421 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
                 EEESSSBHHHHHHHHHHHHSGCCTSEEEEESSSTEEETSCC.SBCCCHSTSS CS
  PF00789.15  22 rFkksdtvesvyeyvdshldekeepFkLltsfPrrlltksd.ktlseagllp 72 
                 rF +++tv +++++ + +     + F+L   +P ++l +++  tl+ea+l+ 
  MMETSP0890-20130614|7325_1 363 RFHAHETVGTLFKFAQIKSGAGPRHFELRCGYPPKPLWPLVdLTLNEAKLHG 414
                 89**************************************999***995554 PP

>> PF01011.16  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.8e-05      0.22       6      26 ..     230     250 ..     227     251 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.8e-05
                 ESTTTEEEEEEST---EEEEE CS
  PF01011.16   6 gtfdGylyAlDakTGkvlWkf 26 
                 ++++ +l  +D++TG  lWk 
  MMETSP0890-20130614|7325_1 230 HPKHPHLAVIDPRTGRRLWKR 250
                 89999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.66
# Mc/sec: 1532.22
//
Query:       MMETSP0890-20130614|7330_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 828.45
//
Query:       MMETSP0890-20130614|7332_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-30  103.9   0.0    5.2e-30  103.5   0.0    1.1  1  PF00578.16 AhpC/TSA family
    1.9e-14   53.3   0.0    2.4e-14   52.9   0.0    1.1  1  PF08534.5  Redoxin
    6.2e-07   28.8   0.0    1.2e-06   27.9   0.0    1.5  1  PF10417.4  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   1.1e-33   5.2e-30       3     123 ..      25     160 ..      23     161 .. 0.95

  Alignments for each domain:
  == domain 1    score: 103.5 bits;  conditional E-value: 1.1e-33
  PF00578.16   3 dkapdfelk....dtdgkkvslsdlkgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekne.......lnfpllsDeegevakaygvlnee....kglalratfvidkegkiry 123
                  +ap+++ +    d++++++s  d+ gk+ +L+fyp df++vC+tel+a++e+++e+++++v++igvsvds++ h ++ e+ +       l++pl++D +++++k++++l  +    +g+a+r+t++id++g++r+
  MMETSP0890-20130614|7332_1  25 APAPEWKGEalmpDGSFQSLSHIDFLGKYYILVFYPLDFTFVCPTELRAYSEAAKELAELDVDLIGVSVDSKFVHLAWTETPRedggvgkLDIPLIADVTKQISKDFDILAADddelAGIAMRGTYIIDPQGTLRA 160
                 6788888887777999999*******************************************************************************************999********************986 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.3e-18   2.4e-14       6     138 ..      27     171 ..      22     179 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 5.3e-18
                 ----S-----TT---EEHHH..HTTSEEEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHH........TT.TSEEE------HHHHHT..-EE-----.-EE--EEEEEE---EEEEEE-SST.T.S CS
   PF08534.5   6 aPdftlplvatdgktvslsd..fkgkkvvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawak........eglkipvlsDesasfakalglrltedasag.irtpryavidedgkvvylevepep.g.e 138
                 aP+ + +++  dg+  sls   f gk ++lvf+p  f+ +C +e+    + ak+++e +vd ++v+++ ++fv  aw++         +l+ip+++D +++++k++++  ++d + + i+++ +++id +g ++++ +++ep g  
  MMETSP0890-20130614|7332_1  27 APEWKGEALMPDGSFQSLSHidFLGKYYILVFYPLDFTFVCPTELRAYSEAAKELAELDVDLIGVSVD-SKFVHLAWTEtpredggvGKLDIPLIADVTKQISKDFDILAADDDELAgIAMRGTYIIDPQGTLRAYTIHDEPlGrS 171
                 5555544445566666777777************************666666666*******999876.57899999999*******999*****************99888877778**********************997742 PP

>> PF10417.4  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.6e-10   1.2e-06       2      39 ..     182     216 ..     181     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.6e-10
                 HH---TS.S-B--TTT.T----BE---SSHHHHHHHHH- CS
   PF10417.4   2 LQladkh.gvatPAnWkPGdkvivpPppteeeavkryle 39 
                 L +ad+h g+ +PAnW+PG  +i   ++ +   +k++++
  MMETSP0890-20130614|7332_1 182 LIYADSHqGEGCPANWEPGASTI---KANPT-DSKEFFK 216
                 789********************...88888.5777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 640.00
//
Query:       MMETSP0890-20130614|7331_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-85  285.8   4.1    1.4e-84  283.8   2.8    1.8  1  PF00909.16 Ammonium Transporter Family
  ------ inclusion threshold ------
        0.1   13.0   0.0       0.32   11.4   0.0    1.9  1  PF12273.3  Chitin synthesis regulation, resistance to Congo red
       0.35    9.6   4.9       0.76    8.5   3.0    1.8  2  PF03613.9  PTS system mannose/fructose/sorbose family IID component


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   2.8   3.1e-88   1.4e-84       2     399 .]      27     491 ..      26     491 .. 0.91

  Alignments for each domain:
  == domain 1    score: 283.8 bits;  conditional E-value: 3.1e-88
                 HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---...-------......--TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----.------TTHHHHHH----------------................--S--GSBHHHHH---HHHH--------------SHHHHH.....HHHHHHHHHHHHH-------TTT--------------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--................................................-----------..-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXXXSB CS
  PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign......lglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfe.........gk....eeaikghnlpfavlGtllLwfgWfgFNagsaltankrara....raavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv................................................askisggllsgegkqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                 +l++++++ ++ qagf+lle+g+vrskn+ ++l+kn++d++++ l+y+  G++l+ g  k  ++ + +       ++ +  ++d+++ ++ +f+fql+fa+t +tivsgav+eri+fsay++f ++++++vy+  +hw+w+ +g l++  ++ DfAg+++VH+++g a+L++a ++g+re+ ++         +k    e+++kgh+++++ +G +l+wf    FNagsal++ ++++     r+av Tll ++ g+ + l+i r++eg i++ + + G+lAGlV++ + cavvepw A++i +  +v+ +++++k+++k++idD+l + +vH ++G++ +lavg+fa +k++                                                  + +g + +g+g ql +q ++ l+ + +a+v++++++  lk+l  Lrv  e+e  glD++ hg  ay
  MMETSP0890-20130614|7331_1  27 WLIIVSLICFLLQAGFGLLETGQVRSKNAKSVLLKNTFDACAGGLAYYCSGWALSRGGIK-ENERAPKpefagdEEWML--LPDAQVESYELFFFQLVFATTVSTIVSGAVCERIQFSAYIIFTIFFVGIVYSLASHWTWSRKGYLYQAAIV-DFAGGGTVHVLAGAASLVGAAIVGPREDFEPpiteqndrrNKssilEDRTKGHDATLSAVGIFLIWFALIPFNAGSALSVCGEEAGrltsRVAVITLLCGCSGGSVSLIIGRFREGYISLEYGQLGVLAGLVSVASCCAVVEPWCAVWIISPLAVFLFWSIDKVQKKFGIDDPLRASSVHWGAGAISILAVGFFASPKYMsqvylngydggnnkcsplqgltirldddfkanqadtaralyryrrndkCRDFYGIFYGGSGIQLAWQCAALLLHTSFALVTSTFIFGSLKYLDLLRVRLEDEVRGLDITHHGGDAY 491
                 666666666666*******************************************99864.333333323332266643..445555556679***********************************************************.***************************988788765543211222234679*****************************9999888999*********************************************************9988888*******************************************************************************************9988888887777777***************************************************9988 PP

>> PF12273.3  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-05      0.32       7      47 ..     505     548 ..     503     644 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-05
   PF12273.3   7 iivvallilffltarinrRRrrkGlqpiygtaWla...pPsyrq 47 
                 ++ ++ +i++ +  +++  Rrr+G+++++ t+ l    pP++  
  MMETSP0890-20130614|7331_1 505 LFHFFSFIFLSIAGITETQRRRTGQHVFPSTGHLNssgPPTFVG 548
                 55566677777777899999999***********9999665533 PP

>> PF03613.9  PTS system mannose/fructose/sorbose family IID component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.0   0.00017      0.76     111     189 ..     122     199 ..     117     200 .. 0.73
   2 ?   -2.1   0.0      0.27   1.3e+03      98     127 ..     227     256 ..     210     271 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00017
   PF03613.9 111 fwgtlrpilaaiaaslalqgnilGpilf..lllfnvirlairyyllelGYklGtklieklsggllkklteaasilGlfvvG 189
                 f +t+ +i+++  ++     ++ + i+f  +++ +v++la ++   + GY   +++++   gg ++ l+ aas++G+++vG
  MMETSP0890-20130614|7331_1 122 FATTVSTIVSGAVCE---RIQFSAYIIFtiFFVGIVYSLASHWTWSRKGYLYQAAIVDFAGGGTVHVLAGAASLVGAAIVG 199
                 444444444443333...234445555511445567789****************************************99 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.27
   PF03613.9  98 glmGPlAGiGDslfwgtlrpilaaiaasla 127
                 g   +l+++G  l+w+ l p  a+ a+s++
  MMETSP0890-20130614|7331_1 227 GHDATLSAVGIFLIWFALIPFNAGSALSVC 256
                 555679999999999999999888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:00.94
# Mc/sec: 1657.06
//
Query:       MMETSP0890-20130614|7335_1  [L=1772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-21   76.7   0.1      2e-21   76.7   0.1    3.7  3  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.9      0.11   1.4e+03      31      54 ..     115     190 ..      56     261 .. 0.52
   2 ?   -2.2   0.0      0.27   3.7e+03      65     111 ..     420     466 ..     370     474 .. 0.79
   3 !   76.7   0.1   1.5e-25     2e-21       1     163 [.    1400    1507 ..    1400    1508 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.11
                 H...........................----TTC........................................H CS
                 x............xxxxxxxxxxxxxxxxxxxxxx........................................x RF
  PF00856.23  31 k............addagtilqakkelaadeakks........................................t 54 
                 +            +dd++ + q +k++++d+  ++                                        +
  MMETSP0890-20130614|7335_1 115 EvpcrqiveheeeKDDESGPHQVEKLQQEDDIQQElprqiaeqeekeeapqgdveeesfleqeeqeelprhlcgaQ 190
                 0444444444444344444444444444444444422222222222234444444444444444444444444443 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.27
                 THHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEEC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23  65 svlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyv 111
                 +  +  +++ r++++ ++  a+++   s  + +a+++  ee ++e++
  MMETSP0890-20130614|7335_1 420 AWKCVKLKNERRKKIFKEIVADCNTFVSSTNIEARETIIEENDDEDD 466
                 55677778888888888888888888888888888888888877765 PP

  == domain 3    score: 76.7 bits;  conditional E-value: 1.5e-25
                  ----EESS-B----EEEEECCCEEECCCCHH...................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00856.23    1 GrGvfAtedipkGefvceyvgelltddeaek....addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163 
                  G+G+ A  di+ Gefv+e  gel+  ++a+k    a                                                           +a + k+++  + +  s ++ida+ +g+ +rf+NHSC+pN+++  +   ++ r++++A+r+ +kG+ +tidY
  MMETSP0890-20130614|7335_1 1400 GWGLCAHTDIATGEFVLEAIGELIDEETAQKrfteA-----------------------------------------------------------NARGDKNFYMIGCKSSSGLIIDATKYGNESRFINHSCTPNCELAKWQIGDEERYGVFALRRLRKGDDITIDY 1507
                  9******************************43221...........................................................2345688999************************************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1772 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1160  (0.0848449); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.36u 0.44s 00:00:02.80 Elapsed: 00:00:01.26
# Mc/sec: 3370.11
//
Query:       MMETSP0890-20130614|7333_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-19   66.8   0.0    1.8e-18   65.9   0.0    1.5  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.3e-22   1.8e-18       1      58 []     125     186 ..     125     186 .. 0.94

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 1.3e-22
   PF08373.5   1 ieidGpthFyrns.gvll...gktklKrriLtalGwkvisipyfeWnelqgkeekldYlkei 58 
                 ie+dGpth++ ++ g+++   g tk+K riL++lGw vi++pyfeW  l +   + +Yl+++
  MMETSP0890-20130614|7333_1 125 IEVDGPTHYLIKGkGKHRienGRTKFKSRILRQLGWAVIHVPYFEWDALIDFAVQDAYLRSK 186
                 9********9999788779******************************99999999**975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 821.61
//
Query:       MMETSP0890-20130614|7336_1  [L=1994]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1994 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.35u 0.41s 00:00:02.76 Elapsed: 00:00:01.47
# Mc/sec: 3250.57
//
Query:       MMETSP0890-20130614|7341_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       728  (0.0532475); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.80
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|7337_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-13   50.7   0.1    2.2e-13   50.5   0.1    1.1  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.1   1.6e-17   2.2e-13     144     202 ..       2      60 ..       1      65 [. 0.91

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 1.6e-17
   PF04577.9 144 eeQvalfssakvivgphGsgLtnllFappgtrvlelvspprldlefenlaallgldyvy 202
                 ++ +++f+ a+ +vg+hG+gL+n +F+ p +++lel  p     e+++la++l+l+y++
  MMETSP0890-20130614|7337_1   2 AHTIRTFNAARLVVGVHGAGLANTVFCSPYAAILELGLPEPEFIEYRHLAQQLHLHYAV 60 
                 5789********************************888666666************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 342.81
//
Query:       MMETSP0890-20130614|7344_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:01.11
# Mc/sec: 865.71
//
Query:       MMETSP0890-20130614|7345_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   37.2   0.0    3.8e-09   36.2   0.0    1.5  1  PF02622.10 Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.7e-13   3.8e-09      11     160 ..     263     446 ..     254     447 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.7e-13
  PF02622.10  11 rsVvllcehse.egalGlilNrpleitlkelleelekea.....l.......se............lkeqsvllGGP....v..eqergfvlhsaekeaeesslevseglllttsldilealiasg.egpeklllflGYagWgagQLesEieegsWlvvpadselifdtppee...lWeealrrl 160
                 ++V+l++eh++  g  G+ lNrp + + ++ l+++  +a     +       ++             ++   ++G P    v  ++++++++h  ++ ++  +l+ + g++ ++  d+++  ++++ ++p ++++flG   Wg+g +e+ i++g    v++++ + +++ ++    +W+e+++ l
  MMETSP0890-20130614|7345_1 263 QEVILIVEHDPkIGCRGVTLNRPAASRADQRLSTALAQAlsadeIvkeqnlsNKkiidassfdsafGQRIAAYVGCPdrskVmnQKSQAMLIHGIADLENARELSPGLGIFRGGLTDAIQR-VKNKqNDPFDFRFFLGSYEWGPGEIEKHIAHGVYKPVACSRAIALKQCIALpqpMWHEIADML 446
                 68*********55**********96444433333333332222423433333113444445555665666999999955554334445889999987755666777779999*********.8888799***********************************999985443334999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.96
# Mc/sec: 1168.22
//
Query:       MMETSP0890-20130614|7356_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-21   73.6   0.0    2.2e-10   39.7   0.0    3.3  3  PF13475.1 Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0034        47      12      40 ..      12      41 ..      10      49 .. 0.81
   2 !   39.7   0.0   1.6e-14   2.2e-10       9      48 ..      70     109 ..      64     110 .. 0.93
   3 !   26.7   0.0   1.9e-10   2.6e-06       1      30 [.     112     141 ..     112     142 .] 0.98

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0034
   PF13475.1 12 ngsalkylseeL.knDkeivlkAvkqngsa 40
                + + + y+++++   +k++ ++ v ++  +
  MMETSP0890-20130614|7356_1 12 FEELIDYVPNSIySTNKDFWIYLVLRDRFS 41
                567789999886699*****9999888755 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1.6e-14
   PF13475.1   9 vkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48 
                 ++++g al+y+++e+k D+e++++Avk+ng al +a+ e+
  MMETSP0890-20130614|7356_1  70 IQNHGRALYYAPHEFKIDREVIIAAVKNNGFALLHAPGEF 109
                 8999********************************9766 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1.9e-10
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeiv 30 
                 D+E++  a+++ g al ++ +eLk+D+eiv
  MMETSP0890-20130614|7356_1 112 DKEVMISACRNTGLALTFAADELKSDREIV 141
                 9****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.33s 00:00:00.73 Elapsed: 00:00:00.98
# Mc/sec: 347.23
//
Query:       MMETSP0890-20130614|7364_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-12   47.0   0.1    2.5e-12   47.0   0.1    2.3  2  PF03105.14 SPX domain
  ------ inclusion threshold ------
      0.041   12.8   0.1      0.064   12.1   0.0    1.2  1  PF04962.7  KduI/IolB family


Domain annotation for each model (and alignments):
>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   3.7e-16   2.5e-12     203     273 ..      22      93 ..       5      95 .. 0.76
   2 ?   -0.1   1.3     0.082   5.6e+02     201     232 ..     200     245 ..     105     285 .. 0.47

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3.7e-16
  PF03105.14 203 relsrdsesls.letkfknkakrklkkalqelyrelelLksYqeLNrtAfrKIlKKyDKqtgsslrqsylee 273
                 ++ +++s++ + ++ +   ++ + +  a + +yr+l lL++Y+  N+ + +KIlKK+DK+tg+++r ++++ 
  MMETSP0890-20130614|7364_1  22 KNDETNSKNMKpTKSVLFPDSGERALLACVAYYRDLILLENYAIVNYCGYSKILKKHDKRTGYQTRARFMNV 93 
                 222233333333555666777888999*******************************************85 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.082
  PF03105.14 201 e..............rrelsrdseslsletkfknkakrklkkalqe 232
                 e               +++   + ++s +  + ++++ ++ +a+ +
  MMETSP0890-20130614|7364_1 200 EaqdnlttttnlpltSSTNVPPYHTSSRDLASIRREESDFIDAILN 245
                 1222233333333322222222222223333333333333333333 PP

>> PF04962.7  KduI/IolB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.4e-06     0.064     152     185 ..     153     186 ..     136     187 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.4e-06
                 -EEEEEEE----EES-SEEE-CCEEEESEECTEE CS
   PF04962.7 152 LlvvevitpegnwSSYPpHkHdednepeetelee 185
                 + ++e+ t ++ ++ YP+H H+++++ + +++ e
  MMETSP0890-20130614|7364_1 153 FSACETGTTSNDTNQYPSHVHQKETLYSASKNTE 186
                 678********************99887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1097.08
//
Query:       MMETSP0890-20130614|7362_1  [L=1028]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-05   23.0   3.7    6.8e-05   23.0   2.6    2.3  2  PF02176.13 TRAF-type zinc finger


Domain annotation for each model (and alignments):
>> PF02176.13  TRAF-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.22   2.9e+03      20      37 ..     350     366 ..     345     369 .. 0.80
   2 !   23.0   2.6     5e-09   6.8e-05      11      60 .]     758     801 ..     755     801 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.22
                 .--SSSSTTTTTTS-TTS CS
  PF02176.13  20 kilRedledHleedCpkr 37 
                 +++  +le+Hl  +C++r
  MMETSP0890-20130614|7362_1 350 QLANSQLETHLL-QCEQR 366
                 56778999**99.99987 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 5e-09
                 B-TT--S-B.--SSSSTTTTTTS-TTS----S-....--------HHHHT CS
  PF02176.13  11 pCpnqcckkkilRedledHleedCpkrevkCkfkevGCkvkvkkealqkh 60 
                 +C+   c++ ++R+++++H++++C+ + v+C+     C ++v + +l++h
  MMETSP0890-20130614|7362_1 758 QCQF--CMRRMPRREMPAHVANECKLAIVECSD----CGERVRRWNLAQH 801
                 5855..9999***********************....************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2350  (0.171884); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.01u 0.42s 00:00:02.42 Elapsed: 00:00:01.75
# Mc/sec: 1407.69
//
Query:       MMETSP0890-20130614|7368_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-28   95.9   0.0    2.2e-16   58.9   0.0    2.1  2  PF13475.1  Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.011   15.4   0.1       0.74    9.5   0.0    2.0  2  PF07283.6  Conjugal transfer protein TrbH
      0.016   14.7   0.0        1.2    8.7   0.0    2.3  2  PF07892.6  Protein of unknown function (DUF1667)
       0.14   11.8   0.5         11    5.7   0.0    2.8  3  PF03671.9  Ubiquitin fold modifier 1 protein
        0.2   11.6   1.2        7.2    6.7   0.1    2.7  3  PF01355.12 High potential iron-sulfur protein


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0     8e-20   2.2e-16       5      49 .]       2      46 ..       1      46 [. 0.97
   2 !   35.4   0.0   1.7e-12   4.6e-09       1      28 [.      48      75 ..      48      76 .] 0.98

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 8e-20
   PF13475.1  5 vleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                vl avk+ng+al+y+ +e+k+D++++l Avk ng+al+ya +e++
  MMETSP0890-20130614|7368_1  2 VLTAVKQNGFALQYAVDEFKSDRDFILSAVKENGHALKYAADEFK 46
                89**************************************99986 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 1.7e-12
   PF13475.1  1 DrEivleavkkngsalkylseeLknDke 28
                D+E+vl avk+ng al+y+ +e+k+D++
  MMETSP0890-20130614|7368_1 48 DKEVVLTAVKQNGLALQYAADEFKSDRD 75
                9**************************8 PP

>> PF07283.6  Conjugal transfer protein TrbH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.014        39      70      85 ..       7      22 ..       2      30 .. 0.83
   2 ?    9.5   0.0   0.00027      0.74      43      85 ..      29      72 ..      24      74 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.014
   PF07283.6 70 aeaglpLrYvvdeaee 85
                +++g++L+Y vde+++
  MMETSP0890-20130614|7368_1  7 KQNGFALQYAVDEFKS 22
                78999*******9986 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00027
   PF07283.6 43 esLrkkGYavleikkakqkaaa.kaaasaeaglpLrYvvdeaee 85
                ++++++G a+   +++ ++ +    +a +++gl+L+Y +de+++
  MMETSP0890-20130614|7368_1 29 SAVKENGHALKYAADEFKSDKEvVLTAVKQNGLALQYAADEFKS 72
                67778887776555554444330234448999999999999876 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0077        21       4      27 ..      13      36 ..      11      39 .. 0.87
   2 ?    8.7   0.0   0.00045       1.2       4      28 ..      38      62 ..      35      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0077
   PF07892.6  4 eeYakkeltnpkriltstVkvegg 27
                 +Ya +e+++ ++ + s Vk +g 
  MMETSP0890-20130614|7368_1 13 LQYAVDEFKSDRDFILSAVKENGH 36
                58*****************97775 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00045
   PF07892.6  4 eeYakkeltnpkriltstVkvegge 28
                 +Ya +e+++ k ++ + Vk +g  
  MMETSP0890-20130614|7368_1 38 LKYAADEFKSDKEVVLTAVKQNGLA 62
                68*****************988765 PP

>> PF03671.9  Ubiquitin fold modifier 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.13   3.6e+02      31      41 ..      12      22 ..       3      35 .. 0.80
   2 ?    5.7   0.0    0.0041        11      31      43 ..      37      49 ..      34      63 .. 0.79
   3 ?    2.3   0.0     0.046   1.2e+02      31      41 ..      62      72 ..      57      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.13
   PF03671.9 31 vlkfaaeefkv 41
                 l++a +efk 
  MMETSP0890-20130614|7368_1 12 ALQYAVDEFKS 22
                4899999*996 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0041
   PF03671.9 31 vlkfaaeefkvpa 43
                 lk+aa+efk   
  MMETSP0890-20130614|7368_1 37 ALKYAADEFKSDK 49
                59********765 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.046
   PF03671.9 31 vlkfaaeefkv 41
                 l++aa+efk 
  MMETSP0890-20130614|7368_1 62 ALQYAADEFKS 72
                589******95 PP

>> PF01355.12  High potential iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.28   7.6e+02       4      20 ..       8      24 ..       5      27 .. 0.77
   2 ?    6.7   0.1    0.0026       7.2       3      21 ..      32      50 ..      30      59 .. 0.83
   3 ?    2.6   0.0     0.048   1.3e+02       4      20 ..      58      74 ..      54      76 .] 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.28
  PF01355.12  4 ptakalgYvadaakadk 20
                ++  al+Y  d+ k+d+
  MMETSP0890-20130614|7368_1  8 QNGFALQYAVDEFKSDR 24
                56679999999988875 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0026
  PF01355.12  3 dptakalgYvadaakadka 21
                +++ +al+Y ad+ k+dk+
  MMETSP0890-20130614|7368_1 32 KENGHALKYAADEFKSDKE 50
                5789***********9975 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.048
  PF01355.12  4 ptakalgYvadaakadk 20
                ++  al+Y ad+ k+d+
  MMETSP0890-20130614|7368_1 58 QNGLALQYAADEFKSDR 74
                67789******999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.70
# Mc/sec: 260.18
//
Query:       MMETSP0890-20130614|7359_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   29.7   0.0    4.1e-06   25.9   0.0    2.1  2  PF11962.3 Peptidase_G2, IMC autoproteolytic cleavage domain


Domain annotation for each model (and alignments):
>> PF11962.3  Peptidase_G2, IMC autoproteolytic cleavage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0     3e-10   4.1e-06      36     104 ..     298     372 ..     283     380 .. 0.78
   2 ?    1.0   0.0     0.012   1.7e+02     168     198 ..     383     415 ..     381     433 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 3e-10
   PF11962.3  36 le.sanGnlkaagavttssaDyAeyfesedgkaidt...GylVtle..gekIrkaeegddilGviSetaavvlde 104
                 ++   +G+++   ++    aDyAeyfe+++ +a +    G +V l+  ++k    ++gd +  ++S+ ++v ++ 
  MMETSP0890-20130614|7359_1 298 GDlRVEGTVYGVLTSRPRCADYAEYFEWDTAEALNPppkGSVVRLKspEQKLTLNTNGDGPCLIVSTSPSVAAGV 372
                 3333456666555555555**********9998877777*******999*********************98875 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.012
   PF11962.3 168 vVGLiGqllvrvdetvepgdlik..andegiat 198
                 +V ++Gq+ vr  + +++gd++    +++g a 
  MMETSP0890-20130614|7359_1 383 LVAFLGQVPVRTRGLIKVGDQLVpsGRNDGTAV 415
                 6889***************88763345556554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.41s 00:00:01.49 Elapsed: 00:00:00.88
# Mc/sec: 1868.07
//
Query:       MMETSP0890-20130614|7361_1  [L=1226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.64    8.0  15.0       0.37    8.8   7.3    2.4  3  PF06011.7 Transient receptor potential (TRP) ion channel


Domain annotation for each model (and alignments):
>> PF06011.7  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1     0.091   1.2e+03     202     217 ..     708     723 ..     692     797 .. 0.76
   2 ?    8.8   7.3   2.7e-05      0.37     407     550 ..     960    1101 ..     817    1112 .. 0.65
   3 ?   -1.7   3.0     0.041   5.6e+02     364     410 ..    1058    1115 ..    1046    1135 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.091
   PF06011.7 202 vnyPpfyqawvsnfaW 217
                 ++yPp+++a++s f +
  MMETSP0890-20130614|7361_1 708 IQYPPVFEAVASAFTF 723
                 5677777777777754 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 2.7e-05
   PF06011.7  407 arksvrlkknkaslLytdlktllkyGflYnqyradavwfvivdlaylfvrslfIgllqssGiaQvvallviEllylilllwirPymdkrs.nalniiisvvrlltallslaFi...pelglseivktvvGvvilvihaivalvllill 550 
                  +++ v+++k       ++++ ++  +f+Y++y +  ++f ivd +  ++ s ++ +l +  + Qv + l + l++  +   +rP+ ++    + ++++  + ++  l ++ ++   ++ +   + ++  +++  v+ a+++ +l++ll
  MMETSP0890-20130614|7361_1  960 VKQLVKVHKR------DQDPSISHLSFIYEEYEPRTYLFSIVDCVRKLCLSGILVFLYPGSLSQVGFALLFALIFAKVQTHVRPFLEDEDdLIAEVVMESLVIFFFLSLMLYVsknRDDNARDTNAATKAFAPKVFGAVFITMLVVLL 1101
                  5555554444......667889999*************************************************************99995555554433333333333333311133344444444445555555555554444444 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.041
   PF06011.7  364 pilvlslfqftqad...........saavvvlAvvllallvglllyfafrviilarks 410 
                   +l l+l+   ++d             a +v+++v++ +lv+lll++++ v++ +  +
  MMETSP0890-20130614|7361_1 1058 FFLSLMLYVSKNRDdnardtnaatkAFAPKVFGAVFITMLVVLLLLAIYVVLLEVFGY 1115
                  4455555555555555555555543367888888888888888888888877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       780  (0.0570509); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.54u 0.70s 00:00:02.24 Elapsed: 00:00:01.60
# Mc/sec: 1836.21
//
Query:       MMETSP0890-20130614|7370_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   53.5   0.8    3.1e-13   49.4   0.1    2.0  2  PF14023.1 Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.1    0.0036        50     173     206 ..      38      77 ..      25      80 .. 0.84
   2 !   49.4   0.1   2.3e-17   3.1e-13       5     203 ..      86     286 ..      79     291 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0036
   PF14023.1 173 illfa.lvavyvlfllf.....dLnkPFsGvyqikrsavt 206
                 + ++  ++++++ f+ +     +L+  F  v+ ikrsa +
  MMETSP0890-20130614|7370_1  38 VRVGGlFMVCILSFFGYiaaskELDIAFVAVLGIKRSATD 77 
                 5555559*****************************9654 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 2.3e-17
   PF14023.1   5 vgvlyatllsltlsvLyqrfnevqeavtkEAslLrvltrnvislpdsel.....kkearalianyvkavvdrerslm.rrg..elsleasseldklldelkalkpaedsesalkeellseiaeltelRanRisleafslppthwivllllsalsligfllellvilnknqlphliaillfalvavyvlfllf..dLnkPFsGvyqikrs 203
                 ++ +y+++l+   ++ + r+  +q+   +E+s L+ l  +v  l + +      +++  a++ + + ++ +  +s     +   l  +++ +l  l+d+l+ ++++++    l  ++ + ++ l ++Ra+Ris+ a +lp    +   + + ++l+ f      il + + p+l+a l+  +  ++ l   f  dL +PF G+++++  
  MMETSP0890-20130614|7370_1  86 LSLIYSIILAQIYDYEFARQGTIQDGLFTETSALQILDAIVETLARRDHaikreRPRLLAIVQDCAVDLLNSGFSAKnNANrtSLLNQTDRQLLVLVDDLEFYAGDRSAA--LCRAAGDTVIGLSKARAQRISAVAAALPLVQLLAERAIAGVVLLSF------ILVDLGAPKLEATLFSIVCGSFFLINSFlqDLSDPFGGSWSVSDT 286
                 5678999999999********************************99989999999999999999999***999999644422555569****************99988..999999***********************99999999999999999......666666666666655444444444433456***********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.70
# Mc/sec: 1050.97
//
Query:       MMETSP0890-20130614|7374_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-24   85.6   0.0      5e-24   85.2   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   3.7e-28     5e-24      14     154 ..      35     204 ..      25     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 3.7e-28
                 X..XXXXXX.---........-TTTTT--------TTT------------------S--TT--.....STT--...-...----S-TT.THHHH---HHHHHHHHTT---------------..............---------..-----------STTT----TTTTT------ CS
  PF00504.16  14 g..fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa....waeag...g...lslptllalqillligflelareqelkapesegsekraypGg..............lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvq 154
                    +Dplgl++ +        ++ +lr+aE++HGRvAM+a+lG++v+     ++ +s++ +lp     +  ag   +   +++p  + lqi++lig+le + e     ++ + ++k ++pG               ++ dp+ +   ++++ek++  l E++nGRlA +++++++ +
  MMETSP0890-20130614|7374_1  35 SgfWDPLGLADLKfwtltkdeSIGFLRHAEIKHGRVAMAAFLGFCVQS----TPLVSGEHTLPPykgyV--AGltpQeqfFNMPLYAKLQIFTLIGMLESYGEGAGM-KDFVHYTKGGKPGYyppikgkglgqiqfNLYDPFDWLpeQTAAEKEKGLLIELNNGRLAQLGIFSLLSE 204
                 448******944477788888***************************....34555666666533321..234442333368888999***********9665543.34444999999*9999***********988999998888999999999****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.34s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 1032.61
//
Query:       MMETSP0890-20130614|7381_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.2   0.9      0.034   13.7   0.1    2.7  2  PF11717.3  RNA binding activity-knot of a chromodomain
  ------ inclusion threshold ------
      0.023   14.3   1.0       0.65    9.7   0.6    2.3  1  PF00567.19 Tudor domain


Domain annotation for each model (and alignments):
>> PF11717.3  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0018        12      14      51 ..     140     175 ..     126     178 .. 0.80
   2 !   13.7   0.1     5e-06     0.034      13      48 ..     206     238 ..     194     244 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0018
                 TEEEEEEEEEEEE----EEEEEE-----SS--EEE-TT CS
   PF11717.3  14 gelrkAeilsirtkkgkyeYYVHYeefNkRlDeWVtae 51 
                  + ++A+il++  +++ ++  VHY  +   +De V+ +
  MMETSP0890-20130614|7381_1 140 RKRQRARILQVVDQADMVK--VHYLTYTSEYDEFVPIS 175
                 5678899999988888888..************99976 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5e-06
                 TTEEEEEEEEEEEE----EEEEEE-----SS--EEE CS
   PF11717.3  13 egelrkAeilsirtkkgkyeYYVHYeefNkRlDeWV 48 
                 + +++ A++l+  t +    + VHY    + +D+WV
  MMETSP0890-20130614|7381_1 206 KRQVYNARVLQLYTGR---AFLVHYLAIGREWDQWV 238
                 5677777777777755...7***************9 PP

>> PF00567.19  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.6   9.5e-05      0.65      50      88 ..     123     162 ..      53     180 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 9.5e-05
                 --------EEEEE-TTT--EEEEEE.EEEE---EEEEEET CS
  PF00567.19  50 slapkvgdgcvalfsedgkwyRAki.tvslddekveVlfi 88 
                 +l++ +++g v+++++  k +RA+i +v++++++v+V+++
  MMETSP0890-20130614|7381_1 123 ELEKSIQEGDVVAIRFYRKRQRARIlQVVDQADMVKVHYL 162
                 56778899999999999999******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.92
# Mc/sec: 648.58
//
Query:       MMETSP0890-20130614|7380_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   63.9   5.6    2.1e-17   63.2   3.9    1.4  1  PF10153.4 Uncharacterised conserved protein (DUF2361)


Domain annotation for each model (and alignments):
>> PF10153.4  Uncharacterised conserved protein (DUF2361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   3.9   1.5e-21   2.1e-17      30     114 .]      10      91 ..       1      91 [. 0.77

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 1.5e-21
   PF10153.4  30 Lealkkel.eeeekkkkekkiikkyhmvrfferkkatrklkqlekkleeaekekekkklkeklsklevdleYviyfPktekYisLy 114
                 Le+ +    +e+++ +k+k+ ++kyh+v+ffer+k++r+l q++++l ++     +++l++   +l +dl+Y++yfPk+ kYisL+
  MMETSP0890-20130614|7380_1  10 LEEAECIAtKERRRAEKAKARARKYHKVKFFERRKIERRLCQVRRELASEP----TNELRKIEAALLEDLDYIKYFPKDRKYISLF 91 
                 3333333303344555666779*************************9976....6777777788899*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.82
# Mc/sec: 499.73
//
Query:       MMETSP0890-20130614|7377_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-88  296.6   0.0    1.4e-88  296.3   0.0    1.1  1  PF07942.7 N2227-like protein
     0.0032   17.0   0.0      0.007   15.9   0.0    1.5  1  PF13489.1 Methyltransferase domain
     0.0076   16.7   0.0      0.022   15.2   0.0    1.8  1  PF12847.2 Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.051   13.9   0.0    2.2  1  PF08242.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF07942.7  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.3   0.0     4e-92   1.4e-88       2     270 ..     116     395 ..     115     397 .. 0.92

  Alignments for each domain:
  == domain 1    score: 296.3 bits;  conditional E-value: 4e-92
   PF07942.7   2 eevvlasrldmskvrstlrqivRdwsaegkeERealykpiieelkelvpseskerekvkilvPGaGlGrlavelatkgyqvegnEfsyfmllvsefiLnav.keenqitiypfvhsfsnqlsrddqlrkvkipDveplselkr.......kknlsmaagdflevykeeeaaesydvvvtcfFiDtaeNvleYletiekvlkpgglwiNlGPLlYhfe.......dltvadevs..ielsleeilalakkvgfkvlkeekeiesgYltnkesmlqlkYklvffvlrk 270
                 + + ++s++d skvrstl+ +vRdwsaeg++ER+++y+p++ el + +p   k  ++v++lvPGaGlGrla+e+a+ gy+++gnEfsy+mllvs+fiLn   +e+++i+i+pf+ + sn +++ d+lr ++ipDv+p+s l++         ++smaag+fl+vy+++  ++++ +vv cfFiDta N+l+Y+++i+++l+pgg wiNlGPLlYh+        + +++d  +  ie++++e+++ + k+gf +++e+  ++++Y++n++sm+ ++Y +  f++ k
  MMETSP0890-20130614|7377_1 116 HRRAMPSEADFSKVRSTLHSLVRDWSAEGATERQQCYEPLLIELGRRFP---KAGSQVRVLVPGAGLGRLALEIAARGYSAQGNEFSYHMLLVSNFILNGGaTESESIEIQPFIDQPSNLRQAADRLRILRIPDVAPSSLLGPalnsnrpPPDFSMAAGEFLSVYQDQ--HDAWSAVVSCFFIDTAPNILQYIDAIYRLLQPGGTWINLGPLLYHWVpneicliPENHDDRYNqsIEIAYDELKHAILKRGFSIEREQW-THCNYTSNPSSMMRTNYDCILFTAIK 395
                 56678999*****************************************...58899******************************************862577899*****************************9988777777766799**************9..9*********************************************9888888833333333244******************998876.**********************9987 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.1e-06     0.007      16     114 ..     159     318 ..     145     377 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.1e-06
   PF13489.1  16 llarlkpgg....rvLDiGcGtGillellaengfdvtgvDpspaaigk...............................................................akqaqksqfdeedaaepag............kfdlivarevlehvpdpeellrqiaellkpgGylll 114
                 l+ r+ p++    rvL  G+G G+l+ ++a++g++  g + s ++                                                                  a                 +             +  +v+ +++ + p+  +++++i++ll pgG  + 
  MMETSP0890-20130614|7377_1 159 LGRRF-PKAgsqvRVLVPGAGLGRLALEIAARGYSAQGNEFSYHMLLVsnfilnggatesesieiqpfidqpsnlrqaadrlrilripdvapssllgpalnsnrpppdfsmA-----------------AgeflsvyqdqhdAWSAVVSCFFIDTAPNILQYIDAIYRLLQPGGTWIN 318
                 33322.222356699999***********************98876658899999999888888777777777777777777666666666666666665444444333332.................0333333333334*******************************98765 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.4e-06     0.022       4     108 ..     171     317 ..     168     321 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.4e-06
   PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelar.............................ena..................ksldleeriellqgda.keelsllerfDavllkgl..tldallaldeprrvlealpkllkpggrlv 108
                 r+l  G+G G+l+le+a   +g    g ++s ++l + +                             +++                  +s++  + ++   g++ ++ +++ +++ av+   +  t  +        ++++a+++ll pgg+ +
  MMETSP0890-20130614|7377_1 171 RVLVPGAGLGRLALEIAA--RGYSAQGNEFSYHMLLVSNfilnggatesesieiqpfidqpsnlrqaaDRLrilripdvapssllgpalNSNRPPPDFSMAAGEFlSVYQDQHDAWSAVVSCFFidTAPNI------LQYIDAIYRLLQPGGTWI 317
                 67777*************..999999**9999999999977777777777777777776664443333222333333333444444444445555555555577777777777778888885533444444......555***********9865 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.051      61      98 ..     278     315 ..     173     316 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
   PF08242.7  61 ldggssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                 +d+ +++ +vv+++++  +++i +++d i++lL pgG 
  MMETSP0890-20130614|7377_1 278 QDQHDAWSAVVSCFFIDTAPNILQYIDAIYRLLQPGGT 315
                 333379999***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.39s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 1111.80
//
Query:       MMETSP0890-20130614|7382_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.24   10.9   7.1        1.7    8.2   0.1    3.3  3  PF01096.13 Transcription factor S-II (TFIIS)


Domain annotation for each model (and alignments):
>> PF01096.13  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.011   1.5e+02      28      36 ..       9      17 ..       6      21 .. 0.73
   2 ?    3.1   0.1    0.0048        65       2      12 ..     178     188 ..     177     192 .. 0.83
   3 ?    8.2   0.1   0.00012       1.7      29      39 .]     217     227 ..     207     227 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.011
  PF01096.13 28 fykCtkCgh 36
                f +C kC +
  MMETSP0890-20130614|7382_1  9 FSRCAKCDE 17
                777888865 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0048
  PF01096.13   2 kCpkCgsreay 12 
                 +Cp+C+++ ++
  MMETSP0890-20130614|7382_1 178 PCPRCDGTSTI 188
                 6*****98775 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00012
  PF01096.13  29 ykCtkCghrwr 39 
                  +C++C+h w+
  MMETSP0890-20130614|7382_1 217 TTCLDCNHVWQ 227
                 58********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:01.05
# Mc/sec: 520.35
//
Query:       MMETSP0890-20130614|7389_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.7   0.9      0.043   13.3   0.0    3.2  2  PF13414.1 TPR repeat
  ------ inclusion threshold ------
       0.06   13.9   0.3       0.38   11.3   0.1    2.6  2  PF13432.1 Tetratricopeptide repeat
        0.9    9.3   6.4       0.29   10.9   2.4    1.6  2  PF06193.6 Orthopoxvirus A5L protein-like
        1.3    8.4  13.5        2.4    7.6   9.4    1.4  1  PF04156.9 IncA protein


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.086   2.9e+02      16      34 ..      53      71 ..      50     120 .. 0.61
   2 !   13.3   0.0   1.3e-05     0.043       8      64 ..     170     252 ..     165     256 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.086
   PF13414.1 16 egdydeAieayekAleldp 34
                e+++d+Aie+++ A ++  
  MMETSP0890-20130614|7389_1 53 ERKLDNAIEFLSLAKSIKN 71
                5677778887777766643 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.3e-05
   PF13414.1   8 elGnalfkegdydeAieayekAleld...................pnnaelyynlAlaylklg.......kdyeeAledyekA 64 
                  ++ +++  +++ +Ai++ ++Al+                     pnna+ly+ +A ++l l        ++  eA++d+++A
  MMETSP0890-20130614|7389_1 170 TEAVEAYLSKRPMDAIDLINEALAGYgvsrggggygappgkhnktPNNASLYLFRARCHLILArvsskrrEQAAEARDDISRA 252
                 678999*****************9644556677777777777788*****888888888866433333335677888888887 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.4   8.2e+03      36      51 ..      99     114 ..      92     116 .. 0.65
   2 ?   11.3   0.1   0.00011      0.38       3      52 ..     171     245 ..     169     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.4
   PF13432.1  36 llaeallrlgrldeAa 51 
                   aea l  g++++A+
  MMETSP0890-20130614|7389_1  99 IKAEANLLIGDVKKAR 114
                 5667777777777765 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00011
   PF13432.1   3 lArallraGdydeAlaaleaalala...................Peaaeallllaeallrl.....grldeAa.a 52 
                 +A +++ ++++ +A++++++ala +                   P +a  +l++a+++l l     +r ++Aa a
  MMETSP0890-20130614|7389_1 171 EAVEAYLSKRPMDAIDLINEALAGYgvsrggggygappgkhnktPNNASLYLFRARCHLILarvssKRREQAAeA 245
                 6889999**************************9999888888888*************9956666555555533 PP

>> PF06193.6  Orthopoxvirus A5L protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.4   8.6e-05      0.29      72     144 ..      48     117 ..      11     127 .. 0.72
   2 ?   -3.5   0.0       2.3   7.8e+03      70      95 ..     345     369 ..     341     380 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.6e-05
   PF06193.6  72 rqqtntssdvsnlfdwlsadtnkksssllpaltpsnsvqdiikefnsvkkdmkqLqaetndLvtdvsdareyT 144
                 r+ +n +++ +n  ++ls  ++ k++s   a++   +  +i +e+ s +k++ +++ae+n L+ dv++are  
  MMETSP0890-20130614|7389_1  48 RNGEN-ERKLDNAIEFLSLAKSIKNKSE--AEKFRLQCLQICQEISSDEKRVLEIKAEANLLIGDVKKAREDS 117
                 34444.4455666699999988666666..567777778999****************************975 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.3
   PF06193.6  70 iprqqtntssdvsnlfdwlsadtnkk 95 
                 i  +q++++ + ++   wl+ d++ +
  MMETSP0890-20130614|7389_1 345 IDLDQNPKQATYNDH-SWLEYDSTYQ 369
                 544555555555554.8888887733 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.4   0.00069       2.4      81     189 ..      26     132 ..      12     134 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00069
   PF04156.9  81 eelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqrlle 189
                 ++++  +++  +l+ee+   e r+ e+e++l++  e l l++    + +++ e+++ ++ ++++ei+  ++ + + k+e+  l  ++++ +ed+q+++ +  e++ +l+
  MMETSP0890-20130614|7389_1  26 RKKKTKKQHNERLDEEVTLDEARNGENERKLDNAIEFLSLAK--SIKNKSEAEKFRLQCLQICQEISSDEKRVLEIKAEANLLIGDVKKAREDSQHIESSCIEIEGALH 132
                 56777788899999****************************..*****************************************************998777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.35s 00:00:01.16 Elapsed: 00:00:00.87
# Mc/sec: 1228.48
//
Query:       MMETSP0890-20130614|7390_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-24   83.8   0.7    1.6e-23   82.8   0.3    1.6  2  PF13874.1 Nucleoporin complex subunit 54
  ------ inclusion threshold ------
        0.8    9.9   6.1        3.6    7.8   0.9    3.0  2  PF10074.4 Uncharacterized conserved protein (DUF2285)


Domain annotation for each model (and alignments):
>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.75   5.1e+03     129     140 ..      41      52 ..      37      54 .. 0.79
   2 !   82.8   0.3   2.3e-27   1.6e-23       2     132 ..      82     209 ..      81     218 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.75
   PF13874.1 129 lkgrleelwarl 140
                 +++r+ elw+ +
  MMETSP0890-20130614|7390_1  41 IERRFHELWSEI 52 
                 678999999876 PP

  == domain 2    score: 82.8 bits;  conditional E-value: 2.3e-27
   PF13874.1   2 kpagvdeekWeeAlednPdperliPvpvkGfeeLakRveaQreevkqlrerlkeineklkelqkhdletskrieeakqkhqelshrllkvaakleilrnkgyalsaeeeelrnkleqlekelnapaqlkgr 132
                 kp+ v++  W++ +++nPdpe+l Pv v+G+++L++R+e++++  + ++e  k+i+ + + l + ++ +++++ e+k++   l+ r+l+va+k+e+lr + +++  ee++l++kl +l ++l+ pa   +r
  MMETSP0890-20130614|7390_1  82 KPDCVQDDLWKKFIRENPDPEKLSPVLVIGMDGLKNRLEMAQHFSTIFQEDTKKIAHRAELLLRSSQVNEVQLSELKARTSRLILRFLRVAKKIELLRAQHLPIHLEERRLLAKLRALDSDLSGPA---TR 209
                 789999***********************************************************************************************************************7...33 PP

>> PF10074.4  Uncharacterized conserved protein (DUF2285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.9   0.00053       3.6      16      60 ..     165     209 ..     113     215 .. 0.84
   2 ?    3.1   0.3     0.016   1.1e+02      19      56 ..     220     259 ..     207     262 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00053
   PF10074.4  16 larllralagraagplaralpaqqrrrllhtLqAlDarlaGaslr 60 
                 + r+lr  +  +  ++++     ++rrll  L+AlD  l+G   r
  MMETSP0890-20130614|7390_1 165 ILRFLRVAKKIELLRAQHLPIHLEERRLLAKLRALDSDLSGPATR 209
                 55666777766777777767888999*************996655 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.016
   PF10074.4  19 llralagraagplara..lpaqqrrrllhtLqAlDarlaG 56 
                  +++++ ++  + a++   ++++++   h+L AlD ++ G
  MMETSP0890-20130614|7390_1 220 KRHSIHTSSNEEQAASdtGTSSSSKASAHLLAALDLQTTG 259
                 44455533333333323589999************87776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 1117.01
//
Query:       MMETSP0890-20130614|7394_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00063   19.7   8.0    0.00063   19.7   5.5    7.4  7  PF08702.5 Fibrinogen alpha/beta chain family
      0.001   17.6   4.1      0.001   17.6   2.9    5.2  5  PF11853.3 Protein of unknown function (DUF3373)


Domain annotation for each model (and alignments):
>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.8      0.18   1.2e+03      63     113 ..       5      53 ..       1      63 [. 0.54
   2 ?   -1.6   5.7      0.35   2.4e+03      48     108 ..      88     148 ..      66     194 .. 0.50
   3 ?   -0.7   4.8      0.19   1.3e+03      52     127 ..     211     285 ..     176     294 .. 0.69
   4 !   19.7   5.5   9.2e-08   0.00063      35     127 ..     304     395 ..     298     404 .. 0.93
   5 ?    3.0   0.9     0.014        92      78     118 ..     411     450 ..     398     455 .. 0.83
   6 !   10.6   2.5   5.9e-05       0.4      24      81 ..     495     552 ..     492     581 .. 0.75
   7 ?    1.8   1.1      0.03   2.1e+02      71     119 ..     586     633 ..     565     645 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.18
                 HHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  63 keslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevl 113
                 +++l++ q+ + + +n  +a++ +l+ +  +i  ++ +++ s++++ ++  
  MMETSP0890-20130614|7394_1   5 EKKLAQVQAMQLEAQNEREALEAQLKAI--TIEATTSMNYSSELEQIKSAA 53 
                 4444555555444445544454444333..455556666666666666555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.35
                 HHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  48 lanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirv 108
                   ++ k++ +   +i+++l+ + ++a  +  + +++  +l+kk+   +e+++ ++ + +++
  MMETSP0890-20130614|7394_1  88 RLQNEKHALQTAAQIQTQLAVDAANAATEAHVREQLLAKLKKKVHDAKEQSDAQICTALSE 148
                 4445555555555555555555555555555555555555555533333333333333222 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.19
                 CCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  52 tkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdi 127
                 t+  e+l  ++k+++++++++++++ +   +  ++le++   ++ +ki +q s ++  + +l++ + ++ +L + i
  MMETSP0890-20130614|7394_1 211 TQVRESLLSKLKKKVHDAKHERSQEFEALTMRLHELETEK-STYTAKIESQTSALQDARAQLTASQARVAELDNII 285
                 3333455666777777777666666666666666677776.67777777777777777778888888777777666 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 9.2e-08
                 CHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  35 dkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdi 127
                 +++i++l+++L q ++++k++ e+  + +++l++ ++  ++ ++ +s+++++ e+++    e++  + +++i++Lq+++ + +s+i+ Le++ 
  MMETSP0890-20130614|7394_1 304 QQDIQDLQQRLSQNEANSKSAAEYASAAEQELNNLRPLVQEIEALKSKLAEK-ESQMKALEEAQGATENATINELQSQVVAHVSRIKLLESAA 395
                 789*************************************************.9999777888999999*********************875 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  78 niesavskslekkiililekkilaqesqirvLqevlrsnes 118
                 + +++v+k+ +++ + +l+k++ ++e+ +  L++  ++ ++
  MMETSP0890-20130614|7394_1 411 EAKNHVQKN-STEFAEKLQKQKAQHEEALATLRKEAEDERE 450
                 456778888.7777999****************99888765 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 5.9e-05
                 HHCHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHH CS
   PF08702.5  24 qdlldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndnies 81 
                 q+l+ k+e++ ++++  l+++L++++ k +++e+   +++ ++k+ +kqa+++   ++
  MMETSP0890-20130614|7394_1 495 QELFAKAETKHREEVAALQKQLNDINTKFTSSEHHCAELEAQIKQLEKQAQEQRRHFD 552
                 78899****************************9999999999988888877755433 PP

  == domain 7    score: 1.8 bits;  conditional E-value: 0.03
                 HCHCCHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  71 kqakdndniesavskslekki...ililekkilaqesqirvLqevlrsnesk 119
                 k++     + + +s +l++++        + + a e+q+++Lq+ l++++ +
  MMETSP0890-20130614|7394_1 586 KNR----DVSDGTSAQLREELntlQASAAIEKRALETQLNELQHELDQQRDH 633
                 222....344445555555554222445556667789999999999998865 PP

>> PF11853.3  Protein of unknown function (DUF3373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.21   1.4e+03      25      66 ..      14      55 ..       5      97 .. 0.60
   2 ?   -8.5   9.2         2   1.4e+04      14      67 ..     104     169 ..      90     224 .. 0.64
   3 ?   -5.7   6.7       1.7   1.1e+04      17      84 ..     220     289 ..     196     319 .. 0.65
   4 ?  -10.0  11.2         2   1.4e+04      16      62 ..     328     374 ..     289     459 .. 0.72
   5 !   17.6   2.9   1.5e-07     0.001      14     131 ..     490     643 ..     473     683 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.21
   PF11853.3 25 adidklqkiekLkkeleelkeqlkdlkkkvekiekksagdrl 66
                 +++++ + e+L+++l++++ + +   +  +++e+ +   r 
  MMETSP0890-20130614|7394_1 14 MQLEAQNEREALEAQLKAITIEATTSMNYSSELEQIKSAARS 55
                333333356777777777776666444444444444444444 PP

  == domain 2    score: -8.5 bits;  conditional E-value: 2
   PF11853.3  14 lalslaaaaaaadidklq.kiekLkkeleelkeqlk...........dlkkkvekiekksagdrlk 67 
                   l++ aa+aa +++     ++kLkk++++ keq +           d+ kk++ +++++++++l+
  MMETSP0890-20130614|7394_1 104 TQLAVDAANAATEAHVREqLLAKLKKKVHDAKEQSDaqictalserdDAIKKLHDLQANQQQSHLN 169
                 333444444444444433389*************88899997776654444444444455555444 PP

  == domain 3    score: -5.7 bits;  conditional E-value: 1.7
   PF11853.3  17 slaaaaaaadidklqkiekLkkeleelkeqlkdlkkkvekiek..ksagdrlkisgdfrfrvdsleyktk 84 
                  l  +  +a  ++ q+ e+L+ +l+el+ +++  + k+e+  +  ++a  +l+ s     ++d++ ++t+
  MMETSP0890-20130614|7394_1 220 KLKKKVHDAKHERSQEFEALTMRLHELETEKSTYTAKIESQTSalQDARAQLTASQARVAELDNIIKDTS 289
                 4444556666677778888888888888888877777766544345666666666666666666666644 PP

  == domain 4    score: -10.0 bits;  conditional E-value: 2
   PF11853.3  16 lslaaaaaaadidklqkiekLkkeleelkeqlkdlkkkvekiekksa 62 
                 +s+a ++ ++     q+ie+Lk +l+e ++q+k+l++   ++e+ + 
  MMETSP0890-20130614|7394_1 328 ASAAEQELNNLRPLVQEIEALKSKLAEKESQMKALEEAQGATENATI 374
                 23333333344444567777777777777777755555444444443 PP

  == domain 5    score: 17.6 bits;  conditional E-value: 1.5e-07
   PF11853.3  14 lalslaaaaaaadidklqkiekLkkeleelkeqlk.......dlkkkvekiekksagdrlkisgdfrfrvdsleyktka..............................lsqlmtaaaqvpgskvkndslytnrlgLnlkakatddvsfkgrLsm 131
                 la+  +   a+a++++  ++++L+k+l++++ + +       +l+ +++++ek+++++r +++ +f ++ + l+ +  a                               ++l+t +a++  +k   +++  n+l+++l+++ +++  +++rL +
  MMETSP0890-20130614|7394_1 490 LATETQELFAKAETKHREEVAALQKQLNDINTKFTssehhcaELEAQIKQLEKQAQEQRRHFDREFATQAETLQFRHRAeleqailqakwqvgdstknrdvsdgtsaqlREELNTLQASAAIEKRALETQ-LNELQHELDQQRDHNHALATRLGV 643
                 4455555566777777779***********999999999999**********************************888777777777777666666666666665554333333333444444333333.366777777777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2710  (0.198215); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                       114  (0.00833821); expected 13.7 (0.001)
Passed Fwd filter:                        61  (0.00446167); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 5.10u 0.40s 00:00:05.50 Elapsed: 00:00:02.86
# Mc/sec: 591.55
//
Query:       MMETSP0890-20130614|7395_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   15.0   0.1      0.042   13.6   0.1    1.6  1  PF09121.5 Tower
       0.08   11.2   0.0       0.12   10.6   0.0    1.2  1  PF12786.2 GB virus C genotype envelope


Domain annotation for each model (and alignments):
>> PF09121.5  Tower
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   6.2e-06     0.042       9      23 ..      46      60 ..      45      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.2e-06
   PF09121.5  9 yvFRneRaEekEAak 23
                 +FR++R+E kE+++
  MMETSP0890-20130614|7395_1 46 AIFRSAREEGKESER 60
                79***********98 PP

>> PF12786.2  GB virus C genotype envelope
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.8e-05      0.12     294     392 ..     311     414 ..     301     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.8e-05
   PF12786.2 294 vkklsvnytvidiggylhalkcPavefpegtlpklipgrPvnaClllgtevseeltaa.gapGGayaPvvtkCnllktkgvdv....CeGfafdfpgdkdGfih 392
                 ++  ++n t ++   y  ++  P+v++ + +  +li+  Pv   l+ g+++s  ++aa +  G  + P+ +  ++++t+  +      +Gfa d++g+   fi+
  MMETSP0890-20130614|7395_1 311 IQRFNMNTTRTRGRAYSGNIYYPSVKHNPLDNRTLIGLFPVMEQLADGKRTSGYIGAAlSCDGVNFSPMTKLVKVPRTSYGRTydmpVDGFAQDSSGRIFLFIQ 414
                 5677899999999************************************9999998872456778****99999998764433122368********9888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.91
# Mc/sec: 1266.65
//
Query:       MMETSP0890-20130614|7401_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 688.48
//
Query:       MMETSP0890-20130614|7400_1  [L=875]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-12   45.4   0.0      2e-11   44.2   0.0    1.6  1  PF12710.2  haloacid dehalogenase-like hydrolase
      1e-10   42.3   1.8    3.4e-06   27.6   0.1    3.0  3  PF00702.21 haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.036   13.8   0.0       0.14   11.9   0.0    2.0  2  PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
      0.041   13.4   0.9         27    4.3   0.0    3.2  3  PF08507.5  COPI associated protein


Domain annotation for each model (and alignments):
>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   5.9e-15     2e-11      49     191 .]      90     338 ..      24     338 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 5.9e-15
                 HHHHHHHHHHHHT.-.HHHH----HHHHHHHHHH................H--B.......HHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-.----..............................................................................................HH----HHHHHHHHHSHHHHHHHH---T.T----S--EE---GGGHHHHH CS
   PF12710.2  49 sdpkdllellaey.g.girviglaarylealake.ieea........klfegfi.......pdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlatel.edeg..............................................................................................ggkvdgritgkldgKaraverlvvlayk.qvggrivvaiGDsanDlpalk 191
                 s p++++ ++++    g r+++la++++   +k   e          + f+gfi       +d++ + ++l ++ +rv++++gd+ l+a +va++  i + + +a  l  de+                                                                                               + v++r+++   gKar+++ l     +  +g  +v+++GD+ nD++alk
  MMETSP0890-20130614|7400_1  90 SAPAWYESTYSSLaEsGMRILALAYKWMPSDSKGkDELPtrpelesdLSFAGFIafecktrADSEVVCRALLDSAHRVAMVTGDAPLTALHVARATRIAHSDAPALVLaIDESaplgtswkspytpprcksrpfilsqvedlaleyalvvtesaliqaaiqnreknapltasmrgvasnvdddlthielkaarelaedevwfaaakaAC-VFARCSPQ--GKARLCRSL-----QrLEGAACVLMCGDGGNDVGALK 338
                 566788888888853688888888888887776544444999999999999999999**9999999999999**********************999*999999999966666******************************************************************************************999777.79999999..7********.....6677799**************97 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.1e-05      0.17      73     163 ..      75     197 ..      30     238 .. 0.72
   2 !   27.6   0.1   9.8e-10   3.4e-06     158     204 .]     290     341 ..     265     341 .. 0.83
   3 ?   -0.5   0.1      0.39   1.3e+03      74     156 ..     412     492 ..     367     549 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.1e-05
                 E.HHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHH.....................HHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC.....SEEEE CS
                 x.xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.....xxxxx RF
  PF00702.21  73 v.gnpewmtalglrviapdlvaaeg....qskgrtvvvla.....................qaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi.....dslvf 163
                 v g pe +++l  ++ ap+  ++      +s  r+ +  +                     ++ + g iaf+++ + + + ++++L +    v+++tgd p ta ++a+  +i      +lv 
  MMETSP0890-20130614|7400_1  75 VkGSPEAIRSLLGKGSAPAWYESTYsslaESGMRILALAYkwmpsdskgkdelptrpelesDLSFAGFIAFECKTRADSEVVCRALLDSAHrVAMVTGDAPLTALHVARATRIahsdaPALVL 197
                 2566666666666666666666666554433333333333565555555555555566666699*********************9999999*****************99998765533444 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 9.8e-10
                 C.....SEEEEHHHTTSHHHHHHHHHHHTS-GG..GEEEEESSCTTHHHHHHTS CS
                 x.....xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  PF00702.21 158 i.....dslvfaevkPepklfvaaieeLqidpg..evamvGDgvnDapalaaAg 204
                        ++vfa+ +P++k   ++++ Lq  +g   v+m GDg nD+ al++A+
  MMETSP0890-20130614|7400_1 290 WfaaakAACVFARCSPQGK--ARLCRSLQRLEGaaCVLMCGDGGNDVGALKQAD 341
                 255556689**********..999999998666778*****************8 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGEBHHHHHHHHHHHHHT...TC.EEEEESSCHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxxxxxxxxxxxxx RF
  PF00702.21  74 gnpewmtalglrviapdlvaaegqskgrtvvvlaqaralgviafadpvkpeaaeavasLkaa...gi.vvlltgdnpetaeaiakqa 156
                  + e+m +++++     l+++++ +  r ++ l+ a++ +v +++ +++ e+ + ++++ a+    +    +t  n+++a+ +a+ +
  MMETSP0890-20130614|7400_1 412 KQKELMGKQQAW-----LKEEMEARAARGETGLG-AQFAAVKSVTLRLRTELTKEIEKIDAQlgsAYdNKDVTDSNKSAADQVAELL 492
                 333333333333.....44444444444444444.5555555555555554444444444432111244444444444444444444 PP

>> PF13246.1  Putative hydrolase of sodium-potassium ATPase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.2e-05      0.14      47      85 ..      41      83 ..      14      87 .. 0.76
   2 ?   -2.7   0.0       1.6   5.3e+03      24      35 ..     240     251 ..     236     268 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.2e-05
   PF13246.1 47 eykkvaelpFnserKrmsvvhk.....ekeylllfvKGAperil 85
                +  ++    F+s   rmsv  +     e+  ++ +vKG+pe i 
  MMETSP0890-20130614|7400_1 41 RVRILGRHHFSSALQRMSVWAEvyangET-RRAALVKGSPEAIR 83
                555666789***********888875433.4888*******995 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
   PF13246.1  24 tEaALlvlaekl 35 
                 tE+AL+++a + 
  MMETSP0890-20130614|7400_1 240 TESALIQAAIQN 251
                 999**9998765 PP

>> PF08507.5  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.012        42      56      77 ..     601     626 ..     546     630 .. 0.71
   2 ?    4.3   0.0    0.0078        27      85     112 ..     716     743 ..     696     756 .. 0.77
   3 ?    1.9   0.0     0.044   1.5e+02      86     134 ..     816     864 ..     805     871 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.012
   PF08507.5  56 i....lykyasFlfsflGRGlfyifl 77 
                 +        +s+ fs+lG G+++if+
  MMETSP0890-20130614|7400_1 601 VrplsSLADYSVVFSILGQGAIHIFC 626
                 25555556789**************8 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0078
   PF08507.5  85 svlsiiiglllflvGliyivlhfvssie 112
                 + ++++++l+l ++Gl+ ++ +fv++i+
  MMETSP0890-20130614|7400_1 716 ENHALFLSLFLAVAGLVLCAWGFVPQIN 743
                 668899*******************998 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.044
   PF08507.5  86 vlsiiiglllflvGliyivlhfvssieppesl.rnkdialsaeqelndde 134
                 ++ ++ g ll++ + +y++ +++++  +++   ++k i+l++e++ nd+e
  MMETSP0890-20130614|7400_1 816 AFLLAQGNLLIIGAAVYLYRQYSQKMAEAQRErKAKLIQLASENK-NDNE 864
                 566677888999999999999999999888561555556666554.4554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.42s 00:00:01.64 Elapsed: 00:00:01.12
# Mc/sec: 1855.59
//
Query:       MMETSP0890-20130614|7403_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-26   91.3   0.4    1.3e-25   90.2   0.3    1.5  1  PF11945.3 WAHD domain of WASH complex


Domain annotation for each model (and alignments):
>> PF11945.3  WAHD domain of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.3   9.3e-30   1.3e-25      27     294 ..       4     283 ..       1     287 [. 0.77

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 9.3e-30
   PF11945.3  27 lqylekvseDvFdrisqrveknrarLeaieeRvklaqakiekikgskk..aikvfssakYPaadklqey.....eslFagakdllelkrsryklqsklraldeksl.qeklkyypvkvntkkeretv..deaeeGlGsLprnlssvsslLLfntee.nlyk.kYv.tlDplagvvtktrkalegeeee.klldaplsitkReqlerktaenyFYvPdlgdvPelDvPslLPdLpGvaddlaysadl.gpgiaPsvplv.aipeLPsleteeievadadskekkv 294
                 +  le  +e v +r+ ++v k+r+r+++i  R+k  +ak++++ +++k  a++v+s+++YP   ++++       s++ ++ ++++l +     +    +++++sl   +l+ +  ++n +++++ +     +eGl   p++++s   lLLfnt+   +y+ +Y  + D lag   + ++  e ++++ kl++ap +i k  +l   +  +y Y P++g++ +lD P  LP Lp +ad + + +    p+iaPs+    a + LPsl  ++ +va+    +++v
  MMETSP0890-20130614|7403_1   4 ITQLEGAMETVMNRVEEKVYKERKRIDSIRSRIKNCEAKVSAMSEARKkrATTVMSTSRYPEIKEINKSlvrasGSIWLASDEGAALGELDDDENCA-LVMEKNSLgTASLELWT-RLNPRRQERAPqlRMEDEGLAEPPQDIKSCAALLLFNTNGyTPYRgNYQyGTDNLAGRQVSVNEPQEHKDDDaKLAEAPETILKGLELPDVAQLDYQYKPEMGEMTRLDLPENLP-LPDIAD-VSFAGGAdLPAIAPSIHRIgAADFLPSLPQDDSPVATVSAPSSNV 283
                 6678888999*********************************9975434***********876655431111156777666777666665544444.44555555155677555.55555555545468899*********************85255653454268*****999999988876654389*********99**999999*********************.9**985.7776543169*******9988999****99999988876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.96
# Mc/sec: 1243.11
//
Query:       MMETSP0890-20130614|7404_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     3e-115  384.6   0.0    2.4e-90  302.7   0.0    2.1  2  PF00285.16 Citrate synthase


Domain annotation for each model (and alignments):
>> PF00285.16  Citrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7   0.0   1.7e-94   2.4e-90       1     290 [.      84     380 ..      84     391 .. 0.93
   2 !   80.0   0.0   8.5e-27   1.2e-22     279     356 .]     405     485 ..     395     485 .. 0.93

  Alignments for each domain:
  == domain 1    score: 302.7 bits;  conditional E-value: 1.7e-94
                 ----------SSEEE------EEE---BHHHHHHH--HHHHHHHHH-----.-HHHHHHHHHHHHHT----TTT---GGGS-S---HHHHHHHHHS----.......------HHHHHHHHHHHHHHHHHHHHHHHH---------TTS-HHHHHHHHH..----........-TTHHHHHHHHHHHS--SS-HHHHHHHHHHTTT--HHHHH---------------TTTHHHHHHH---GGGHHHHHHHHHHHT-..--------S-SS--HHHHHHHHHHHHH-TT...-HHHHHHH CS
  PF00285.16   1 GlegvvaaeteissidgekgkllYrGydiedlaekssfeevaylLltgelp.tkeeleefkeelaerrelpeevakvikalpksahpmavlraavsalaaydke.eekdesaeevlekalrliaklptiaaaiyrarkgkepiepdpelsyaenflymlgakgee......pseeeaealdlalilhaDHglnaSTftarvvaStlsdlysavsaaigaLkGplHGgAneevlkmleeigseeeveeyiekaldkge..rimGfGHrvYkteDPRakilkelaeelaaekgddellelae 290
                 G++ + ++++e+++idg kg+l +rGy i++la+ks++ ev+ylLl+g lp tk++l+ f+ e+++r++++e+++++ik +p+ +hpm+ l  +v al+a++ + + k+ s+ ++  +++r+iaklptiaa++yr++ g ++++p+++ls+a nfl+m++a   +      p +++ +ald++lilhaDH++naST+t+r+++S++++++++++++i++L+Gp+HGgAn++v+++l eig+e ++ ++i +a+dk +  ++mGfGHrvY+t DPRa+ +k+la +     ++++ ++ ae
  MMETSP0890-20130614|7404_1  84 GFTATSSCKSELTYIDGPKGILCHRGYAIDELAAKSTYLEVCYLLLNGVLPrTKRQLQLFEFEVNRRMTVHERLRTFIKGFPDGSHPMSTLVGTVGALSAFYCKqQVKEMSQADRALACIRVIAKLPTIAAMSYRHSIGAPFVYPRKDLSLAGNFLHMCFAPILQggeftpPPQAFIDALDVFLILHADHEQNASTSTVRLAGSSEANPFACIASGISSLWGPMHGGANQAVIQQLLEIGDESRIPHFIARAKDKSDpfKLMGFGHRVYRTLDPRAREMKRLALKCI---ETRQAMDAAE 380
                 788999********************************************95789**********999********************************999877777778889999*****************************************77544467799999************************************************************************************999***********************8877...4455555555 PP

  == domain 2    score: 80.0 bits;  conditional E-value: 8.5e-27
                 T...-HHHHHHHHHHHHHHHT...TGGG----HHHHHHHHHHH----GGGHHHHHHHHHT---HHHHHHHHT..T------ CS
  PF00285.16 279 ekgddellelaekleevaled..lkekklypNvDfysgvvlkalgipeelftplFavsRvvGwlAhvieqle.knnkiiRP 356
                 +++ ++l++la klee+al+d  + ++kl+pNvDfysg++l a+ ip ++ftplFa++R+vGw+A++ e+ + +++ki RP
  MMETSP0890-20130614|7404_1 405 QNDLHRLFQLAIKLEETALNDeyFVKRKLFPNVDFYSGLALAAMHIPLSMFTPLFALGRAVGWVAQWKEYIDdPTRKIGRP 485
                 456689*****************************************************************999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:01.02
# Mc/sec: 1320.35
//
Query:       MMETSP0890-20130614|7406_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-22   79.5   0.0      2e-22   78.7   0.0    1.4  1  PF09793.4 Anticodon-binding domain
    5.3e-09   35.5   0.5    1.3e-07   31.0   0.3    2.1  1  PF06372.7 Gemin6 protein
  ------ inclusion threshold ------
       0.16   11.6   1.6       0.36   10.4   1.1    1.6  1  PF06631.6 Protein of unknown function (DUF1154)


Domain annotation for each model (and alignments):
>> PF09793.4  Anticodon-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   4.4e-26     2e-22       4      91 .]     118     203 ..     116     203 .. 0.96

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 4.4e-26
   PF09793.4   4 pvdlerlekrlreaieeakekeksigkgvspegqelfdalaktipdvrWsgknIvvldevkispPYkvenvksllkdnskalervqkv 91 
                  vd  + ekr++ea e+++++ ++ ++++spegq +fdala+t++ ++W++++I+vld+v i+pPY+ +++ sl ++++++ler+qk+
  MMETSP0890-20130614|7406_1 118 AVDPAEHEKREKEAYEAMERAMEQLNPNASPEGQFIFDALARTLE-CNWKDNSILVLDQVCIDPPYEASTCHSL-DGDQNSLERIQKI 203
                 6788899**************************************.************************9976.************8 PP

>> PF06372.7  Gemin6 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.3   2.8e-11   1.3e-07      29     161 ..      58     207 ..      46     212 .. 0.67

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.8e-11
   PF06372.7  29 ikGwlltvdpvsksvvlvnfledGa..lsvsvvlGhavktveiiseleyrkreklmyvyasleakGyspedlekkksslkkwlek.............nrlsvteegd.adrllcvlGvltieppyaqescrs..sneiilsriqdliqnm 161
                  +G ++t+dpv++++v+ n +++ +       +  h++k++e+ +e e   +e    +    +   +   + e    ++ + +e+             + l+ t e +  d+ + vl  ++i+ppy+  +c+s   ++  l+riq+++ + 
  MMETSP0890-20130614|7406_1  58 CQGTVYTIDPVTQTLVIFNRVNQNSaeCELRLIPSHSIKKIEVLRESETASEEISTEILPAVDPAEHEKREKEA-YEAMERAMEQlnpnaspegqfifDALARTLECNwKDNSILVLDQVCIDPPYEASTCHSldGDQNSLERIQKIVSGL 207
                 6899************9998775441145567889*************99986655555555555553222221.1222333332111111111111145667777653688999*****************94446889******99875 PP

>> PF06631.6  Protein of unknown function (DUF1154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1     8e-05      0.36      25      43 ..     198     216 ..     194     217 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8e-05
   PF06631.6  25 kKqqKEldsLkKKhaKers 43 
                  + qK ++ LkK+haK+++
  MMETSP0890-20130614|7406_1 198 ERIQKIVSGLKKRHAKQQQ 216
                 678999***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:01.03
# Mc/sec: 535.11
//
Query:       MMETSP0890-20130614|7405_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.83
# Mc/sec: 594.76
//
Query:       MMETSP0890-20130614|7399_1  [L=1292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066    9.9   0.2        4.5    3.9   0.0    2.1  2  PF11894.3 Protein of unknown function (DUF3414)


Domain annotation for each model (and alignments):
>> PF11894.3  Protein of unknown function (DUF3414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0   0.00033       4.5     917    1098 ..     317     535 ..     303     550 .. 0.82
   2 ?    3.8   0.1   0.00034       4.7    1530    1565 ..     928     962 ..     864     965 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00033
   PF11894.3  917 sdnpeialaslkILkkissspnfseadeseeerlrknrllgvlessdeserIkqgfveqleseldeeeeg............................................aesielqlkvaIldlLisnlsqssdapniAHlLLGfevkgnvlelgpqdpgvlesqssllhslLnlleksldsisesd..............ideaparLaelalqlllkLcsnpltSeltLrylr 1098
                  +d++ +a+++l++L+++ + ++++             rl ++l+s  + +  k +f+++l ++++    +                                            ++s++ + ++  l lL ++    s++ ++ H LLG + + +  +lg++        s +l +l++    sl+  +++                + + a +ae+al+ll+ L + + +  ++ r l+
  MMETSP0890-20130614|7399_1  317 TDREAVAVLALELLHRVVTARALA-----------PGRLKAILASAGDEANTKSAFAARLHARTEALMLEtedenededsaldgaisrkrplaptpdadglfgggtstnkkrrvETSSSATARELTLALLAESSMPGSESYSLGHWLLGLDKESR--FLGND--------SGCLLALVDAAFASLEVLEGRVkrlghiplgplgarSLLENALIAERALDLLYSLATAQSSRPAVVRCLT 535 
                  6788999************99999...........79********9999999*********9998877767888999*************************************99*****************99999***********998844..44444........3344444444444444444444444444489999998999999999999999999997777666666665 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.00034
   PF11894.3 1530 eltvfeaklalLtrlAqtrsGAeaLlqaglfeiLae 1565
                  + t+ e+ +a L+rlA  r+GA+ L ++g++++La+
  MMETSP0890-20130614|7399_1  928 AATA-ECAVAALIRLAGLREGARTLADKGVVGALAS 962 
                  4443.889999**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.79u 0.46s 00:00:02.25 Elapsed: 00:00:01.44
# Mc/sec: 2150.06
//
Query:       MMETSP0890-20130614|7407_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.7   0.0       0.18   11.2   0.0    2.2  2  PF07883.6 Cupin domain


Domain annotation for each model (and alignments):
>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.025   3.5e+02      37      57 ..      36      57 ..      18      60 .. 0.76
   2 ?   11.2   0.0   1.3e-05      0.18      21      52 ..      90     123 ..      83     133 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.025
                E.EEEE-TT-EEEE-TT-EBEE CS
   PF07883.6 37 e.eveleaGdsvyfpagtpHrf 57
                + +v+l+a++++   +  +Hrf
  MMETSP0890-20130614|7407_1 36 RaPVQLNADELIAYSTSGWHRF 57
                25899***************98 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1.3e-05
                 EEEEEEE--EEEEE-TE..EEEE-TT-EEEE-TT CS
   PF07883.6  21 effyVleGegeltvdge..eveleaGdsvyfpag 52 
                 +++++l+G ++lt+ g+    +l+aGd+v +p++
  MMETSP0890-20130614|7407_1  90 QLVIILSGSIVLTIYGKpvGKPLKAGDIVGVPTT 123
                 899**********88885677***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.38s 00:00:01.24 Elapsed: 00:00:00.68
# Mc/sec: 1864.22
//
Query:       MMETSP0890-20130614|7408_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-09   35.3   0.0      4e-05   22.7   0.0    2.6  3  PF01494.14 FAD binding domain
    1.2e-08   34.3   0.7    1.9e-07   30.4   0.5    2.2  1  PF04115.7  Ureidoglycolate hydrolase


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.16   1.1e+03       3      34 ..      17      52 ..      15      63 .. 0.78
   2 !    9.6   0.0   5.6e-05      0.38     162     178 ..     174     190 ..     141     248 .. 0.84
   3 !   22.7   0.0   5.8e-09     4e-05     275     320 ..     315     361 ..     294     372 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.16
                CEEE--------HHHHHHHHH.HH.....EEEEESSS CS
  PF01494.14  3 dVlIVGaGpaGlmlallLseaGvr.....vvlvekhs 34
                + +I G+G aG +l + L+ + +r     v l ek++
  MMETSP0890-20130614|7408_1 17 KLVIAGSGIAGNVLLRQLRPY-IRlgyldVYLFEKRE 52
                5689********999999988.876666666666665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 5.6e-05
                 CEEE-------HCHHHS CS
  PF01494.14 162 kYlvGaDGgrStvrktl 178
                 +++vG+DG  S+vr+++
  MMETSP0890-20130614|7408_1 174 DFVVGCDGRYSKVRESV 190
                 79************986 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 5.8e-09
                 EEEEE-EEEEECSSEET.TEE-----SEE--S------HHHHHHHHH CS
  PF01494.14 275 vsawevaqrvaeryrkg.rvflaGDAaHihpPtgGqGlNtaiqDayn 320
                  ++w  +q + ++y    +++l+GDAa +  P+ GqG N++++Da  
  MMETSP0890-20130614|7408_1 315 SAHWARKQETPTKYAIAnNILLIGDAAGAIYPSLGQGANLSLEDACI 361
                 578999999999999766**************************975 PP

>> PF04115.7  Ureidoglycolate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.5   2.8e-11   1.9e-07       4     129 ..     445     564 ..     442     573 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 2.8e-11
   PF04115.7   4 itaepLtaeaFapFGdvieaeeaksvliNqgsaekyhdlaelenlykkearavislfraaprelplevkilErHpfgsQaFvPlgespeylvvvApte....glpdlkklraFvakgaqaVtygagvWHa 129
                 i+a+  t+++Fa FGd+++  +++  l N ++     dl++         ++++ +++      pl+v+ l rH + +Q    l+++p +l v  pt     ++p l+++++F+  +++ V+++ag+WHa
  MMETSP0890-20130614|7408_1 445 IQAQVATRDNFASFGDLVTI-SQDGDLYNPNTIDAKLDLSKG--------EPRLYFMEL-HGPRPLSVRWLTRHTQVTQCLASLDNQPFWLAVHIPTPsendHKPTLTNTKVFLIPPRHFVKLHAGTWHA 564
                 78888899999999999998.444445565555544444443........333333333.33456899******************998998887643334489999**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.63
# Mc/sec: 2369.73
//
Query:       MMETSP0890-20130614|7409_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-09   36.2   0.0    8.3e-09   35.1   0.0    1.6  1  PF00787.19 PX domain
     0.0044   15.8   5.4       0.02   13.7   3.1    2.4  2  PF03918.9  Cytochrome C biogenesis protein


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.2e-12   8.3e-09      14     112 ..      44     147 ..      34     148 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.2e-12
                 E..CETSSEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTT.....TSTSTS--TTSSSHHC.....GTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHHHHC CS
  PF00787.19  14 k.gskkhsyylievelktgakewtvkRrYsdFeeLhskLlrkfp.....rlklPplPkkvlfgsv.....rkkdeefiekrrkgLeeyLqrllnhpelrksevltsFLev 112
                 +  ++ +  +++ev  ++    ++v+RrY +F+ Lh+ L+++          lP++ +k+++++          +++i++r   L++yLq +l     + se++++FL++
  MMETSP0890-20130614|7409_1  44 SsAKSGKFEIIYEVVIGS----HHVRRRYGHFVILHESLRSELGghsltSTSLPEAAPKRTLEELargraGEGTTRVIRQRSMRLQVYLQAVLAIA--ADSEAVREFLDS 147
                 33678899999****996....6***********************99999999999999998669**998889****************999877..679999999986 PP

>> PF03918.9  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.1     7e+02      84      94 ..      65      75 ..      62      81 .. 0.78
   2 !   13.7   3.1     3e-06      0.02      16      71 ..     292     347 ..     279     354 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.1
   PF03918.9 84 veRYGdfvlyk 94
                  RYG+fv+++
  MMETSP0890-20130614|7409_1 65 RRRYGHFVILH 75
                68******987 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3e-06
   PF03918.9  16 aaaaaidevefdpaqearareLakeLRCpvCqnqsiadSnapiAkdlRrkvremlk 71 
                 a  a + ++ +d +  +++r++a++ RC     q i + +a  A+ l  +vre+  
  MMETSP0890-20130614|7409_1 292 AREARARKFVQDRQRLEQVRKIARTARCQAAIAQAIFEAQAATAQALESQVRELAT 347
                 33344455555889999***********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1435  (0.104959); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:01.24
# Mc/sec: 1567.29
//
Query:       MMETSP0890-20130614|7410_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-22   79.8   0.0    8.3e-22   77.4   0.0    2.0  1  PF00295.12 Glycosyl hydrolases family 28
  ------ inclusion threshold ------
      0.058   13.4   0.2       0.22   11.5   0.2    2.1  1  PF12708.2  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> PF00295.12  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   1.2e-25   8.3e-22      20     244 ..      95     400 ..      78     404 .. 0.89

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 1.2e-25
                 -TT--....---EEEEE--BB--------E...EEEE-----...EEEE---.--B------S------..-------EEEEEEEEEEEEEE--EEE--SS--EEEE.EEEEEEEEEEEE-----...........................................------EE-S-E-EEEE-EEEESSS-S-EE----............................-EEE----EE-----EE-EE-----.--EEEEEEEEEEEES-----EEEEET.......T----EEEEEEEEEEEE- CS
  PF00295.12  20 ltslsgpcksdatvtlegtttakskeskgk.d.liwitaeki...tvlgasGggtiDGqgkaWwdesckkkksckkkpkflrfsklknstiknlsiknspnfhvsvedcknltasditidapags...........................................pNtDGidigsskgvtisnstiktgDDCiaigsgsk...........................nisitnvtcggGhGiSiGsvggrsdentVsnvtvkdctvtgtdngvRiKtak.......gatgtvsnityenielkn 244
                   ++ gp+ +++++ ++g+++a  +   ++ +  + i++ +i   + l+++Ggg+i+G+g++Ww +       + k p+++ fs+++n  i+nl+  nsp fh++v++++ + +s++ i    +                                             NtDG+d+  s+ + ++n  +++ DD +ai+  ++                           n+ + nvt+  G G+S+G v  +++++ V +  +++ t+     g+ +Kt         +++  + +i+y +i +++
  MMETSP0890-20130614|7410_1  95 KCEIWGPIAENISLRISGSISALDEIEAWPaNgSKYISLLSIhyaNGLQVNGGGMIEGNGHRWWWKFLFPPGLNTKRPMLIDFSHVQNLVIENLAFFNSPRFHIHVTEANTARISNLVILVDWQHqqhitriarntqiwqqqstsswlkkarawlqiafitnpfpmfpFNTDGVDVAGSD-ILVENLFVENWDDVVAIKPSKRifsqstelgpsaakraqaysdwhwctrNVIVRNVTSLFGGGLSVGDVVAGKQQECVRGASFEQITLYRPFKGIYVKTSGhcstfieDCSALIADIKYRDIRIHG 400
                 55677999999**********997776666534666666665222679*************999988876689999****************************************9875544444599**************************************99*******9985.99************************************************************************************************965445666688889999******9986 PP

>> PF12708.2  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.2e-05      0.22     103     229 ..     176     331 ..      45     341 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.2e-05
   PF12708.2 103 q...irnividgtgialdntasgihwqvaqntsidnvkainigkdgiefntgtaetiegstqvrgifien...................................gsggivvenlvfnggddG.atlgsqqltirnltfentcatGigisggstivinnvtisnca 229
                     ++n+vi++ +++ +++   ih ++a+   i+n+ +  +  +   ++  + +t         i++++                                   gs++ v enl++ + dd  a+  s  ++ + ++ + ++a   + ++++ ++++nv ++n +
  MMETSP0890-20130614|7410_1 176 DfshVQNLVIENLAFFNSPR-FHIHVTEANTARISNLVILVDWQHQQHITRIARNTQ--------IWQQQstsswlkkarawlqiafitnpfpmfpfntdgvdvaGSDILV-ENLFVENWDDVvAIKPSKRIFSQSTELGPSAAKRAQAYSDWHWCTRNVIVRNVT 331
                 13336666666666666333.456666677777777744443333333333333333........4444455555555999999999999999999988888887778888.999999999997788889*****************************8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.84
# Mc/sec: 1158.24
//
Query:       MMETSP0890-20130614|7411_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-11   42.8   0.2    6.6e-11   42.2   0.1    1.3  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
    2.8e-08   33.9   0.7    5.4e-08   33.0   0.5    1.5  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
    9.7e-07   28.5   2.5    5.3e-06   26.1   1.7    2.1  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
    1.4e-05   25.1   0.6    2.5e-05   24.2   0.4    1.4  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
    6.6e-05   22.5   1.0    0.00011   21.7   0.7    1.5  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    7.2e-05   22.1   0.1    0.00013   21.3   0.1    1.5  1  PF02558.11 Ketopantoate reductase PanE/ApbA
    0.00015   20.8   0.3    0.00025   20.1   0.2    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
     0.0016   17.7   0.2     0.0044   16.3   0.1    1.7  2  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
     0.0048   16.8   0.6     0.0076   16.1   0.4    1.3  1  PF13460.1  NADH(P)-binding
     0.0074   15.7   0.3      0.014   14.8   0.2    1.4  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.024   14.9   0.2      0.054   13.7   0.2    1.6  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      0.044   13.9   0.0      0.093   12.9   0.0    1.6  1  PF13478.1  XdhC Rossmann domain
      0.049   13.5   0.1       0.12   12.2   0.1    1.7  1  PF02254.13 TrkA-N domain
        0.1   11.5   2.7       0.17   10.8   1.9    1.3  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain


Domain annotation for each model (and alignments):
>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   6.7e-14   6.6e-11       4     114 ..      29     140 ..      26     186 .. 0.74

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 6.7e-14
                 BEEB-------HHHHHHHH---EEEE--SSHHHHHHHHHTT.EEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-..----EEEE-S---HHHHHHHHHHHHH---EE CS
  PF03446.10   4 igfiGlGvMGspmalnllkagyevavynrtkekveelvaeg.akaaesieelvasldvvilmvkagkavdeviegelleal..ekgdilidgstsspedtrelakelkekglrf 114
                 i ++G GvMG+ +a+ l+ ag  v+++nr+ +k+++l +   + + ++i+++va+ +vvi+ v  ++ +  + ++ +lea+   + ++li+ st +p +++  ++ ++  g ++
  MMETSP0890-20130614|7411_1  29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDkIIVEADIKKAVAASNVVIMNVVGDSGMS-TANK-VLEAAgsVEKKTLIQWSTHHPFAAKTQQSIAQDLGWQY 140
                 8899**********************************996699999*********99999987655443.3333.3333322567899********99999988888888665 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.5   5.5e-11   5.4e-08       2      81 ..      29     103 ..      28     120 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 5.5e-11
  PF03807.12   2 igiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelgvkvtavsneeaaeeadvvilavkpedveevlael 81 
                 i i+G+G +g+alak la ag   + v+i  +rs +k+ +l++  ++ v+a + ++a+++++vvi  v  +   ++++++
  MMETSP0890-20130614|7411_1  29 ITILGGGVMGQALAKCLAGAG---TPVTIW-NRSIKKLDALRDMDKIIVEA-DIKKAVAASNVVIMNVVGDSGMSTANKV 103
                 78*******************...9***66.**********9999987777.*************998766655555555 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.7   5.5e-09   5.3e-06       2      75 ..      29      89 ..      28     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5.5e-09
                EEEE-------HHHHHHHTTEEEEEEE-S-HHHHHHHHHHTSBTTTBTT-B--TTEEEES-HHHHH----CEEE CS
  PF01210.18  2 vavlGaGswGtalAkvlaenghevrlWvreeklieeinerrenvkylpgiklpenlvattDleealkgadiivl 75
                +++lG+G +G alAk+la  g +v++W r+ k+++++++  +             + +++D+++a++ ++++++
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDK-------------IIVEADIKKAVAASNVVIM 89
                8*****************************888887776554.............4555555555555555554 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.4   2.5e-08   2.5e-05      13      81 ..      27      89 ..      18     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.5e-08
                -EEEEE----HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEEE CS
  PF01488.15 13 kkvlviGAGemarlvakhLlekgvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvis 81
                  ++++G+G m++++ak L+  g   ++i NR+++k+++L +    +   ++  ++++++ a ++vvi 
  MMETSP0890-20130614|7411_1 27 DGITILGGGVMGQALAKCLAGAGTP-VTIWNRSIKKLDALRDMD--K---IIVEADIKKAVAASNVVIM 89
                5689******************998.**************8887..3...5555677777777777764 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.7   1.2e-07   0.00011       2      53 ..      29      80 ..      28     116 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.2e-07
                EEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH.. CS
  PF02737.13  2 vaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekg 53
                ++++G G+mG+ +A+ +a ag +V+++++s ++l++ +++ +  +e+ ++k+
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDKIIVEADIKKA 80
                89****************************9999998877665555544444 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.3e-07   0.00013       1      55 [.      29      85 ..      29     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-07
                EEEE-----------HHHHHHH-EEEE----.HHHHHH----EEE-SS.-EEE---S CS
  PF02558.11  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknglrlksdk.geeivrpp 55
                i+ilG G +G+ la +La ag  vt+++rs  +l+al++ +  + + + ++ ++ ++
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIkKLDALRDMDKIIVEADiKKAVAASN 85
                89**********************************999999888888655555544 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   2.6e-07   0.00025      38      99 ..      28      91 ..      18      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.6e-07
                EEE-B-------HHHHHHHH---EEEE--SS--.....HHHH---EE--CCCCCCC-SEEEE-- CS
  PF02826.14 38 tvGiiGlGrIGqavakrlkafgmkvlaydrskkkee..eeeelgaevvsleellaesDvvslhl 99
                 + i+G G +Gqa+ak+l++ g  v++++rs kk +  ++ ++ +  +++++++a s vv++++
  MMETSP0890-20130614|7411_1 28 GITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDalRDMDKIIVEADIKKAVAASNVVIMNV 91
                578****************************998885423333334558999999999998876 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.5e-06    0.0044       3      58 ..      29      84 ..      27     102 .. 0.93
   2 ?   -2.1   0.0       1.9   1.9e+03      96     133 ..      97     131 ..      87     137 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.5e-06
                EEEE------------TTT---EEE---S-HHHHHHHH----SS-----HHHHH-- CS
   PF03721.9  3 iaviGlGYvGlptavvlaekghevvgvDineekvdklnsgkipiyEpgleellkkn 58
                i+++G G  G  +a +la  g+ v++ + + +k d+l+  +  i+E ++++ + + 
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDKIIVEADIKKAVAAS 84
                99***********************************************9988764 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.9
                 ---HHHHHHH---HHHH--EEEE-S------TTTTHHH CS
   PF03721.9  96 lkyvesaaeeiaevlkkgkvvvvkSTvpvgtteelvke 133
                 ++ ++++ e+ ++v kk  +++  ST  + +++   ++
  MMETSP0890-20130614|7411_1  97 MSTANKVLEAAGSVEKK--TLIQWSTHHPFAAK-TQQS 131
                 55566666666666665..99999998887775.4444 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4   7.8e-06    0.0076       1      94 [.      29     116 ..      29     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.8e-06
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpessgvtivkkDlfdledlaealagvdvvvdafgarpedregvkhlldalkaagvrrlv 94 
                 I ++G+ G  G++++k l+ +g  vt   R+ +kl+++ +++ + +    ++d+++a+a   vv+ ++  ++   + ++++l+a+ +  ++ l+
  MMETSP0890-20130614|7411_1  29 ITILGG-GVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDKIIV----EADIKKAVAASNVVIMNVVGDSG-MSTANKVLEAAGSVEKKTLI 116
                 8899*8.*****************************9888887777....5688899999*****99984333.66677777777776666665 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.4e-05     0.014      23      75 ..      29      81 ..      17     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
                EEEE-------HHHHHHHH---EEEE--SSTTHHHHHHH----BSSS.-TTTC CS
  PF01262.16 23 vvviGaGvvGlgAievakglgaevvaldkrperleqveslgaefvevdrseee 75
                ++++G+Gv G++ ++   g g +v++  ++ ++l +++++ + +ve d+++ +
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDKIIVEADIKKAV 81
                689*******************************************9988765 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   5.6e-05     0.054       2      41 ..      29      71 ..      28      90 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.6e-05
                EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS...TTSSHH CS
  PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierrdrll...raldee 41
                ++++GGG+ G  lA  la  g  Vt+  r+ + l   r +d+ 
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLdalRDMDKI 71
                78****************************9999666666665 PP

>> PF13478.1  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.5e-05     0.093       2      62 ..      30      89 ..      29     116 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.5e-05
                EEE-----HHHHHHHHHH---EEEEEES-GGG-TT-SEEES-.HHHHHH.HS---TT-EEE- CS
   PF13478.1  2 lifGaghvaqalaklaaelgfrvtvvddreerfpaadevekl.paeeleealsldentavvl 62
                 i+G+g ++qalak++a +g  vt++++  +++ a ++++k+ ++ ++++a+++++   v++
  MMETSP0890-20130614|7411_1 30 TILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDKIiVEADIKKAVAASNV--VIM 89
                79*************************998777655554443144555555544333..333 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00013      0.12       1      50 [.      29      78 ..      29     116 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
                EEEE---HHHHHHHCCCHH--..EEEEES-HHHHHHHHH---EEEE--TT CS
  PF02254.13  1 iiiiGlGrvGrslaeeLregekdvvvidkdeerveelreeglevvvgdat 50
                i i+G G +G++la+ L  ++ +v++  ++ ++++ lr+ +  +v++d  
  MMETSP0890-20130614|7411_1 29 ITILGGGVMGQALAKCLAGAGTPVTIWNRSIKKLDALRDMDKIIVEADIK 78
                689****************5557************999988777777765 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.9   0.00018      0.17      35     126 ..      25     114 ..       9     123 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00018
                 -S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-ST---HHHHSSEEEE-------B-GGG-----EEEE---EEC..TTEEE--B-HHH CS
  PF02882.14  35 egkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeilreaDivvvavGkpelvkaemvkegavviDvGinrvkekgklvGDvdfee 126
                 e   ++++G + ++g++la  L+ ++  Vt+ +++ k+l++ lr  D ++v +  ++ v a++v    vv D G+++ ++  +  G v+ ++
  MMETSP0890-20130614|7411_1  25 EKDGITILG-GGVMGQALAKCLAGAGTPVTIWNRSIKKLDA-LRDMDKIIVEADIKKAVAASNVVIMNVVGDSGMSTANKVLEAAGSVEKKT 114
                 444556666.5689********************9999976.5667777777889999******************9977778888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1116.11
//
Query:       MMETSP0890-20130614|7414_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-42  144.2   0.0    6.2e-42  143.4   0.0    1.3  1  PF01704.13 UTP--glucose-1-phosphate uridylyltransferase
    0.00049   18.6   0.1    0.00073   18.0   0.1    1.1  1  PF10140.4  WXG100 protein secretion system (Wss), protein YukC
  ------ inclusion threshold ------
      0.034   13.3   0.4       0.33   10.0   0.1    2.5  2  PF00483.18 Nucleotidyl transferase
      0.034   14.1   0.0      0.063   13.3   0.0    1.5  1  PF12804.2  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> PF01704.13  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   1.8e-45   6.2e-42      58     346 ..     165     477 ..     146     480 .. 0.86

  Alignments for each domain:
  == domain 1    score: 143.4 bits;  conditional E-value: 1.8e-45
                 EEEEEE----------S-----B-HHHH....H......HHHHHHH..CC------EEEEE----HHHHHHHHHH..T----GG.EEEEE---EE-B-----B-EEETTEE-EE-..-.....-----HHHHHHTTHHHHHHH----EEEEEETTB.T--TT-TTT---TTT----E-EEEE---STT-----EEEE---EEE--GGGS-HH......HHH--BSS-----...EEEHHHHHHHHHTTGGG---EEE-----EE-.........---EEE--....GGGGGGG-SSEEEEE-H.HH--B--SSC CS
  PF01704.13  58 avlkLnGglgtslGvkgpkslievregitfLDl......kvqqieelnkkynvdvPlllmnSfnTeeetkkilek..Ysglkve.iktfqQsryPriskdsllpvekkakesmak..deWYPpGhGdlfrslaasglldellaqGkeyifvsnvdN.LgavvDlkilnfviekkieylmevtektkadvkgGvlisydgklrllevaqvskekvdefksaskfklfNtnNi...wvnlkavkrlveseelkleiivnqkkitykd.........egikvlqletaigaaikqFekslgveVpR.drflpvktts 346
                 a + L+Gg+gt+lG + pk+ +++++  +   l       + ++ +l +  ++   l++m+S+ T+++tkk++e   Y+gl  + ++++ Q+ +P++s d+ l  ++       k   +  P G+G+++++la  g +d l+++G +yi++  vdN Lg+  D+ +++f+i + +    +v+ k  +d+++Gv+++ +g+  ++e++++  ++ +       + l+ ++Ni    v+ +++     ++   l+++ ++kki+  +         +  + ++let i +a +  ++ +++e +R   f pvk++s
  MMETSP0890-20130614|7414_1 165 AAVILAGGQGTRLGFNLPKGCFQMKDLPSKPHLfeafakRLLKVTSLAQA-KMAPRLIIMTSYATDKDTKKFFESnnYFGLDAQrVHFVPQGTMPALSLDHHLNKDQMRIMLATKstLALAPNGNGGIYQALAMYGYVDLLEEEGVQYIHIFSVDNlLGKPCDPVFIGFCIAHDATVASKVVPKCSPDERVGVMAKKNGRTTVVEYSELDPQEAKRCDPFTGRLLYIAGNIcnhCVTPQFLTAAASVDPHFLPYHLARKKISTPNpkngtpmipDIPNAIKLETFIFDAFTLCDDHFTLECSRaHDFAPVKNAS 477
                 56789*******************65544433311111123334443333.344459****************9999****9988************999887766644333222114567***********************************99******************************************************99999998999999999998888999999999999999***********9999999999998888999***********************999******98 PP

>> PF10140.4  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.1e-07   0.00073     287     321 ..      84     118 ..      62     127 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.1e-07
   PF10140.4 287 sdekyllYWieiGrgefeealdiAkklddndlily 321
                  d+++llYW+++Gr    e+ ++A++++d d+ + 
  MMETSP0890-20130614|7414_1  84 FDQEHLLYWLDSGRLSLAESWELATYINDVDMAYV 118
                 499***************************98764 PP

>> PF00483.18  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.71   2.4e+03     205     235 ..      66      98 ..      41     103 .. 0.74
   2 ?   10.0   0.1   9.7e-05      0.33       2     117 ..     166     323 ..     165     379 .. 0.50

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.71
                 H---CCCHHC-EEEE-SSSEEEE..--B----- CS
  PF00483.18 205 tdilpaaleegkealaflrkgea..yWsDvGtv 235
                  d+++++++++ ++ + l+++e+  yW D G +
  MMETSP0890-20130614|7414_1  66 IDVMRNMVSKELREKCSLFDQEHllYWLDSGRL 98 
                 466667777776666667777669999999876 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 9.7e-05
                 EEEE--------.----TT.......TS-G.GG---CTT-HHHHHHHHHH.TT-SEEEEEEEGGGHHHHHHHTTTT-S.S-..................................B---EEESS--...-HHHHHHHHHHTS-TTS...EEEEEESS-B--- CS
  PF00483.18   2 avILaGGsGtRL.wPltrt.......lakk.lvpvlgkerliqytlsrlansgieeiivvltqehrflvaeqlregsk.lg.................................vevlialepegr...gtAdAvalaaelledeksdelvlvLagDhlikd 117
                 avILaGG+GtRL + l +         +k+ l+ +  k rl++ t   la++++   ++++t++  +   +++ e ++ +g                                  + + al p+g+     A A++ +++lle+e  ++++ +++ D l ++
  MMETSP0890-20130614|7414_1 166 AVILAGGQGTRLgFNLPKGcfqmkdlPSKPhLFEAFAK-RLLKVT--SLAQAKMAPRLIIMTSYATDKDTKKFFESNNyFGldaqrvhfvpqgtmpalsldhhlnkdqmrimlaTKSTLALAPNGNggiYQALAMYGYVDLLEEEG-VQYIHIFSVDNLLGK 323
                 8**********953443321111111222203333333.555443..344445555555555555555444443333303355555666666666666666665555555555555555555555542223444444455555555.456666666665555 PP

>> PF12804.2  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.063       1      34 [.     166     201 ..     166     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
                 EEEE----------..-GGG-B----BHHHHHHHHH CS
   PF12804.2   1 aviLAGGrSsRmgg..dKallplggkpllervldal 34 
                 aviLAGG+++R+g   +K   ++++ p   ++ +a+
  MMETSP0890-20130614|7414_1 166 AVILAGGQGTRLGFnlPKGCFQMKDLPSKPHLFEAF 201
                 79***********66899999987765333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.41s 00:00:01.29 Elapsed: 00:00:00.85
# Mc/sec: 1547.76
//
Query:       MMETSP0890-20130614|7412_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   13.7   0.2      0.049   12.8   0.2    1.4  1  PF08453.5 Peptidase family M9 N-terminal
      0.034   13.7   0.3       0.07   12.7   0.2    1.4  1  PF06648.6 Protein of unknown function (DUF1160)


Domain annotation for each model (and alignments):
>> PF08453.5  Peptidase family M9 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   7.2e-06     0.049      95     151 ..     258     314 ..     248     328 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.2e-06
   PF08453.5  95 lsqkvaqalkafakNpnfkdgtdeqgkvlkelltliDsvrqqaevlnkvtaiLkqfn 151
                   q+++qal   + N+n  +++  + +++++++ l+D+  +++ + ++v+ +++++ 
  MMETSP0890-20130614|7412_1 258 DHQDIRQALINTFHNANITEQQVTHINTFTQVTALADNLHNNNPISPVVLLAFNEYF 314
                 5679***********************************************999986 PP

>> PF06648.6  Protein of unknown function (DUF1160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2     1e-05      0.07      37     101 ..     231     294 ..     228     312 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
   PF06648.6  37 kklvkvlkmFiereievediyeiveavdgikLtkkQidylvkqvyenekiisilqkfvdeqrLtd 101
                 +k+v+ l   ++++i++ +i+ i++a d   + +  i+ + ++ ++++++++i ++f++ + L d
  MMETSP0890-20130614|7412_1 231 RKFVTSLVHALAQDIHNGKICIIINAGDHQDIRQALINTFHNANITEQQVTHI-NTFTQVTALAD 294
                 68999999999***************************************997.78998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.43
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|7415_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2388  (0.174664); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.68u 0.36s 00:00:02.04 Elapsed: 00:00:02.27
# Mc/sec: 957.49
//
Query:       MMETSP0890-20130614|7417_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-19   68.2   0.0    7.7e-18   63.9   0.0    2.6  3  PF00085.15 Thioredoxin
    3.9e-11   42.9   0.1    5.3e-11   42.5   0.1    1.2  1  PF13848.1  Thioredoxin-like domain
      1e-05   25.4   0.1      0.002   18.1   0.0    3.5  3  PF13905.1  Thioredoxin-like
    0.00019   21.3   0.0    0.00054   19.8   0.0    1.8  1  PF13899.1  Thioredoxin-like
     0.0067   16.5   0.0       0.15   12.1   0.0    2.9  2  PF13098.1  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.086   12.1   0.1       0.34   10.2   0.0    2.0  2  PF11287.3  Protein of unknown function (DUF3088)


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   3.4e-21   7.7e-18      19      99 ..       2      82 ..       1      85 [. 0.92
   2 ?   -2.0   0.0       1.1   2.5e+03      50      71 ..     205     226 ..     195     232 .. 0.75
   3 ?    0.8   0.0      0.15   3.4e+02      56      80 ..     245     269 ..     228     294 .. 0.74

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 3.4e-21
                SCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEE.ESSSSEEEEE---.-HHHHHH CS
  PF00085.15 19 klvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlkl.fkngkkveevegarekeklva 99
                + vl++fyApwC+hC +l+P++e++a + + +v +ak+d++ +k la+e  v+g+Ptl + + ++++  +++gar+ ++l+a
  MMETSP0890-20130614|7417_1  2 QWVLLDFYAPWCAHCARLNPILEEFAAART-SVRVAKIDATRHKGLATEHVVDGYPTLRFrVSADGEFRDFKGARDLNALEA 82
                569************************999.***************************99456788899******9999875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.1
                 TSEEEEEETTTTHHHHHHTT-- CS
  PF00085.15  50 kvvlakvdvdenkdlaseygve 71 
                 k+v+a vd ++ ++ a ++ v+
  MMETSP0890-20130614|7417_1 205 KIVVAVVDPNATEHNALTVAVK 226
                 7899999988888888777775 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.15
                 EETTTTHHHHHHTT--SSSEEEEES CS
  PF00085.15  56 vdvdenkdlaseygvegiPtlklfk 80 
                 +d + +++ +s+++v+ +P l+++ 
  MMETSP0890-20130614|7417_1 245 LDGNRWAQYVSTFDVHDLPHLLVID 269
                 788999999**********998875 PP

>> PF13848.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   2.3e-14   5.3e-11       2     174 ..     115     283 ..     114     294 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 2.3e-14
                 S-TTSTHHHHHHHHHHH--.--B------HHHHHHTT-----EEEEETTTTEEEEE-HH..T--HHHHHHHHHHH--XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF13848.1   2 edkddelkeiFekaakelkgdvtfgvtsekevakklgikepkvllfrkfdekrvkydge..kltvddlkkfieknslpl.vgeltpenaeelfesglppllllflnkdseet...eklknriekvakkfkgkinfatvdadsfkrlleylglsssdlPvivivdsksdkkkffpedefs 174
                 ++++++   iF+++a++  ++++f+ ts+       +ik+ +v ++ k+ +++  ++ +  +++  + k++++k+ +pl    l p+ +      + +++++++ ++ +e++     +k++i ++  +++ ++   + d+++++++++ ++++  dlP++ ++d  +++ ++  ede++
  MMETSP0890-20130614|7417_1 115 NSSSSNQERIFRAVANDRYHEASFATTSD------EKIKSGSVAVVEKNMNEPYYFPFSeqEFSEASFKSWVKKHNVPLfASPLGPSIFRRMAAAR-KIVVAVVDPNATEHNaltVAVKDAIYQADSSIREYFAAGWLDGNRWAQYVSTFDVH--DLPHLLVIDLPGKR-FWNHEDEIT 283
                 56788999********9999*****8874......5699*********9999998888899******************6688********87777.89999998877666544478899999999999***9999**************999..*********77655.455577766 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.6e-07     0.002       2      28 ..       2      28 ..       1      58 [. 0.91
   2 ?    1.7   0.1      0.11   2.6e+02      53      72 ..     152     173 ..     108     189 .. 0.73
   3 ?    1.0   0.0      0.19   4.4e+02      74      91 ..     252     269 ..     224     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 8.6e-07
   PF13905.1  2 kivllyfaaswcppckaftpelkelye 28
                ++vll+f+a+wc +c + +p l+e+  
  MMETSP0890-20130614|7417_1  2 QWVLLDFYAPWCAHCARLNPILEEFAA 28
                689*********************976 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
   PF13905.1  53 kylkknkkpwlavpfndkr..r 72 
                 ++++kn+++++ +pf++ +   
  MMETSP0890-20130614|7417_1 152 AVVEKNMNEPYYFPFSEQEfsE 173
                 6778888999999999887432 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.19
   PF13905.1  74 klkklykvkaiPtlvvld 91 
                 ++ + ++v  +P+l+v+d
  MMETSP0890-20130614|7417_1 252 QYVSTFDVHDLPHLLVID 269
                 56688999*********9 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.4e-07   0.00054      18      79 ..       2      60 ..       1      61 [. 0.84

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.4e-07
   PF13899.1 18 kpllvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanleldr..qgvPvvvf 79
                +++l++f+a wc +C +l+  +   ee++a  +  + + ++d t+ ++ l++++  +g+P++ f
  MMETSP0890-20130614|7417_1  2 QWVLLDFYAPWCAHCARLNPIL---EEFAA-ARTSVRVAKIDATRHKG-LATEHvvDGYPTLRF 60
                7********************9...56677.88899999999997776.666777888998865 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   6.7e-05      0.15       6      49 ..       2      39 ..       1      83 [. 0.60
   2 ?   -0.1   0.0       0.4   9.1e+02      73      94 ..     252     273 ..     110     287 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.7e-05
   PF13098.1  6 krvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnid 49
                + v+++f +p+C  C++l++ l++        + +  v+ ++id
  MMETSP0890-20130614|7417_1  2 QWVLLDFYAPWCAHCARLNPILEEF------AAARTSVRVAKID 39
                5699**************9988752......2223333333333 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.4
   PF13098.1  73 elgrklgvrgtPtivfldgeGk 94 
                 +   +++v+  P ++++d  Gk
  MMETSP0890-20130614|7417_1 252 QYVSTFDVHDLPHLLVIDLPGK 273
                 3556666777777777765555 PP

>> PF11287.3  Protein of unknown function (DUF3088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.34      23      53 ..      12      42 ..       7      54 .. 0.91
   2 ?   -2.5   0.0       1.4   3.1e+03      75     103 ..     212     240 ..     201     243 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
   PF11287.3 23 ycpdcvaieGllasfpalaeeldvervdfar 53
                +c++c+++  +l  f+a ++++ v+++d++r
  MMETSP0890-20130614|7417_1 12 WCAHCARLNPILEEFAAARTSVRVAKIDATR 42
                6***************************998 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.4
   PF11287.3  75 addkpakadaaeaggrrfiddekaIlrlL 103
                   ++++++  ++a + ++++  ++I++++
  MMETSP0890-20130614|7417_1 212 DPNATEHNALTVAVKDAIYQADSSIREYF 240
                 33333333335555556666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 1043.89
//
Query:       MMETSP0890-20130614|7421_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-27   95.7   0.1    3.7e-27   94.5   0.0    1.7  2  PF03109.11 ABC1 family
    4.1e-08   32.6   0.0    6.7e-07   28.7   0.0    2.4  2  PF01163.17 RIO1 family
     0.0017   17.4   0.0      0.012   14.6   0.0    2.0  1  PF00069.20 Protein kinase domain
     0.0088   15.6   3.0       0.51    9.9   0.1    3.2  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   8.7e+03      77     104 ..      18      45 ..       6      53 .. 0.67
   2 !   94.5   0.0   1.1e-30   3.7e-27       2     107 ..     114     218 ..     113     231 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.5
  PF03109.11  77 eelvdelskelaeeldfkrEAknaekfr 104
                  +++  l+++ a+e++++r+ ++ e++ 
  MMETSP0890-20130614|7421_1  18 SRVIPILARYKAKEIELERRCASEEECL 45 
                 5555556677778888888888888775 PP

  == domain 2    score: 94.5 bits;  conditional E-value: 1.1e-30
  PF03109.11   2 elg.kpveevFaefdeePlAaASiaQVHrAvlks.geeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenf 107
                 elg ++++e+F+efd+ePl+aASiaQVH A+lk+ g++VavKvqrpg +  + +D+++lk++akll+   +    d+  +  el + l  eldf +EA+++ek+r  +
  MMETSP0890-20130614|7421_1 114 ELGiNSLNEIFSEFDDEPLGAASIAQVHGARLKHtGQRVAVKVQRPGARALLLADVANLKRFAKLLASALPV---DYYVVFSELGEALEGELDFFKEAQSMEKLRAAV 218
                 56657899************************998********************************99999...89**************************99875 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.074   2.5e+02     151     173 ..     153     175 ..     149     186 .. 0.88
   2 !   28.7   0.0     2e-10   6.7e-07      69     152 ..     234     325 ..     225     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.074
                 EEETTSTTHHHHHHHHHHHHHHH CS
  PF01163.17 151 aveldhpnalefLerDveniikf 173
                 av+++ p a+ +L  Dv n+ +f
  MMETSP0890-20130614|7421_1 153 AVKVQRPGARALLLADVANLKRF 175
                 68999**************9987 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2e-10
                 ---S--EEEEETTEEEEE----TTCEGGCTTTS-......-HHHGCHHHHHH....HHHHHHHCS-EEESS-STTSEEEESS.SEEE---TTEE CS
  PF01163.17  69 gvrvPkpialkrnvlvmefigedgvaapklkdvel.....eeaeelyeeile....emrklykeaglvHaDLSeyNvlvded.kvviIDvsQav 152
                 ++++P p    r vlvmefi+  gv++ +l++ +       +a+ +  +i+     + ++++ + g vHaD    N++++e+ +v ++D +Q  
  MMETSP0890-20130614|7421_1 234 KIPMPIPGLSSRKVLVMEFIE--GVPLSRLRESNRfdpnsPQAKLAGTKIVTslgdAYARMVFNGGHVHADPHPGNIFISENlDVALLDCGQTK 325
                 688899999************..*********99999987555555666776444466677778899*************************75 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.6e-06     0.012      69     148 ..     230     327 ..     128     346 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.6e-06
                 E............STEEEEEEE--SC-EHHHHHHHHCCB..-HHHHHHHHHHHHHHHHHHHHT.....CEE-S--SGGGEEEETT--EEE------EEE CS
  PF00069.20  69 e............kdelylvleyveggdlfdllkkegkl..seeeikkialqilegleylHsn.....giiHrDLKpeNiLldkkgelkiaDFGlakkl 148
                              +++ +lv+e++eg  l+  l++++++  +  ++k   ++i+++l   + +     g +H D  p Ni+++++ ++ + D G  k+l
  MMETSP0890-20130614|7421_1 230 PppvkipmpipglSSRKVLVMEFIEGVPLS-RLRESNRFdpNSPQAKLAGTKIVTSLGDAYARmvfngGHVHADPHPGNIFISENLDVALLDCGQTKQL 327
                 1555555555555677899*******9999.677799997777899999999999998888876777799************************99987 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.2    0.0092        31      18      60 ..     147     187 ..     141     286 .. 0.66
   2 !    9.9   0.1   0.00015      0.51     168     193 ..     298     322 ..     287     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0092
                 ETT.TEEEEEESSCCHHHHHHHHHHHHHHHCCSSS.B--BEEE. CS
  PF01636.18  18 tgagryvlrrarparaaeelrrevallrlLakagi.pvPevlag 60 
                 ++++r+++++ rp+ a++ l + va l+++ak+   +   ++++
  MMETSP0890-20130614|7421_1 147 HTGQRVAVKVQRPG-ARALLLADVANLKRFAKLLAsA--LPVDY 187
                 55579999999999.9999999999999999987643..33333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00015
                 EB-SS-SGGGEEEETTTTEE.EE---T CS
  PF01636.18 168 llHgDlhpgNllvdpddgrv.gviDfe 193
                  +H D+hpgN+++   ++   +++D++
  MMETSP0890-20130614|7421_1 298 HVHADPHPGNIFIS--ENLDvALLDCG 322
                 69************..566669***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.95
# Mc/sec: 1377.27
//
Query:       MMETSP0890-20130614|7420_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-20   72.2   0.0    1.3e-18   67.2   0.0    2.3  1  PF00350.18 Dynamin family
    2.2e-09   37.2   0.0    4.8e-09   36.1   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
    0.00014   22.2   0.0     0.0032   17.8   0.0    2.4  2  PF08477.8  Miro-like protein
     0.0042   16.2   0.0       0.25   10.4   0.0    2.3  2  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
       0.02   13.9   0.0       0.22   10.5   0.0    2.3  1  PF04670.7  Gtr1/RagA G protein conserved region
      0.035   13.1   0.0        1.7    7.6   0.0    2.4  2  PF04548.11 AIG1 family
      0.077   12.3   0.0        0.3   10.3   0.0    1.7  1  PF00009.22 Elongation factor Tu GTP binding domain
       0.17   11.1   0.0        2.5    7.3   0.0    2.2  2  PF00071.17 Ras family


Domain annotation for each model (and alignments):
>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   7.8e-22   1.3e-18       1     168 []      82     242 ..      82     242 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 7.8e-22
                 EEEE--TT---HHHHHHH-------..----------EEEEEEE------------E-EET-----CHHHHHHHHHHH-----------SS-EEEEEEETTS-SEEEEE------------.......HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH------EE-EEE-C CS
  PF00350.18   1 iavvGsqSaGKSSllnaLlgedilp..rgpgptTrrplvlqlgeeeraseravkeevkeeekkledfdevreeieketeklagankgiskkvillkilsllvkgltlvDtPGldsvnkrdq.......elveeyikkadiilavtdanhdlstsealflarevdpkgkrtivVltkl 168
                 ++++G++S GK+S++ +L+g+d+    +gp+ptT+r++ +++g++ r+++                 ++++   +k ++ l+g+++++ +k    +   +  +++tl+DtPG+ s++k++         +v+++++++d+i++++da++   + e + ++++++p+ +++ v l+k+
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDFPGqrIGPEPTTDRFVAVMHGDQDRSIP----------------GNALAMRSDKPFAGLQGFGNRFLEKFQGAELDVPILQNITLIDTPGILSGEKQRIgrdydfqTVVQWFAERSDLIILMFDAHKLDISDELRLAIDALRPHYTKVRVLLNKA 242
                 6799*******************77447788*************999554................444555555555555555555555555555777899***********99999999****************************88877888888999*********99985 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.8e-12   4.8e-09       2     111 ..      82     238 ..      81     242 .. 0.60

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 2.8e-12
                 EEEE--TT---HHHHHHHHCST..CTEETS-TT-SSSESEEE.........................E...........ETTE.......EEEEE---SSSHHHHHHHHH..HHHHHHHHH.CTSSEEEEEEETTS.HHHHHHHHHHHHHH.TCCCEEEE CS
  PF01926.18   2 vaivGrpNvGKStLinaLtgek..aakvsdypgtTrditene.........................v...........kkek.......iilvDtPGiiegasedkeie..gikkylekv.eradvlllvvdasa.vlkeadkellnele.akkplilv 111
                 v ++G+  vGK+++i++L+g++   ++++  p t r +   +                         +           +          i+l+DtPGi++g++++       ++ + +   er+d+++l++da++  ++++ +  ++ l+ +  ++ ++
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDfpGQRIGPEPTTDRFVAVMHgdqdrsipgnalamrsdkpfaglqgFgnrflekfqgaE--LdvpilqnITLIDTPGILSGEKQRIG-RdyDFQTVVQWFaERSDLIILMFDAHKlDISDELRLAIDALRpHYTKVRVL 238
                 789****************8656555677777776666332223334444444444444444444430444455545441..0334444579********99777664.3465556677777***********876555444444444443434455555 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.9e-06    0.0032       2      32 ..      82     112 ..      81     143 .. 0.76
   2 ?    1.9   0.0      0.16   2.7e+02      63      95 ..     192     224 ..     155     243 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.9e-06
   PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpee 32 
                 v+++G+++vGK+s++++l+g++fp + +  e
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDFPGQRIGPE 112
                 7899********************3333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.16
   PF08477.8  63 lkkehelllkkadaillvydltdeesleevsel 95 
                 ++   + + +++d i+l++d  + +  +e++  
  MMETSP0890-20130614|7420_1 192 FQTVVQWFAERSDLIILMFDAHKLDISDELRLA 224
                 5555566799**********9887766666555 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.021        36       3      23 ..      82     102 ..      80     110 .. 0.89
   2 !   10.4   0.0   0.00015      0.25      47     122 ..     168     249 ..     159     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.021
                 EEEE--TT---HHHHHHH--- CS
  PF02421.13   3 valvGnpnvGKttlfnaltga 23 
                 v l+G+  vGKt+++ +l g 
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGR 102
                 789************999985 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00015
                 EEEEEEE------SSSSSHHHHHHHHHHH...HH--SEEEEEEEGGGHH..HHHHHHHHHHHTT.-SEEEEEETHHHHHC-- CS
  PF02421.13  47 keveivDLPGiYsLsayseeekvardyll...eekpdviinvvDasnle..rnLyLtlqllelg.vpvvvalnmiDeaekkg 122
                 ++++++D PGi s ++  +   +  ++++    e+ d+ii + Da++l+   +L L ++ l  + ++v v ln+ D ++ ++
  MMETSP0890-20130614|7420_1 168 QNITLIDTPGILSGEKQRIGRDYDFQTVVqwfAERSDLIILMFDAHKLDisDELRLAIDALRPHyTKVRVLLNKADTISPQQ 249
                 6899**********99999888888888766689***********998622679999987765537888999*999988766 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.22       2     168 ..      82     289 ..      81     291 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
   PF04670.7   2 lLLmGksgsGKtSmrsiiFsnylardtlrLgaTi........................................dveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnve........vliyVfDiesreleedlekfqeileallqyspeakvfvlihKmDlisedereeifeerkeeireeiedleieeleffaTSiwdeslykAw 168
                 +LL+G+ + GKtS    +  +  + + +  + T+                                        + +  ++ +    ++ l+D++G  +  ++  +  +++ f++v          +i +fD+++ +++++l   + ++ al+ +    kv vl++K+D is ++  +++ + + ++ + ++  e+ ++++ a S  +e +++A+
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDFPGQRIGPEPTTdrfvavmhgdqdrsipgnalamrsdkpfaglqgfgnrfleKFQGAELDVPILQNITLIDTPGILSGEKQ--RIGRDYDFQTVVqwfaersdLIILMFDAHKLDISDEL---RLAIDALRPH--YTKVRVLLNKADTISPQQLLRVYGALMWQLGRVMATPEVVRVHLGAFSKSNENFFNAY 289
                 7999999999999665555555666666667777788889999999999999999999999999999999999855555555444556778999998655555..34555555555445555556899999**955666555...5566666654..46899**********9999999888888887777776666666666666666666665 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.03        51       3      25 ..      82     104 ..      81     130 .. 0.81
   2 ?    7.6   0.0   0.00098       1.7      49     101 ..     168     220 ..     154     234 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.03
                 EEEE-------TT---TTTTS-- CS
  PF04548.11   3 ivlvGktgnGkSaTgNsilgkka 25 
                 ++l+G+  +Gk + + s++g++ 
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDF 104
                 79******************986 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00098
                 EEEEEEE--CGCCTTCHHCCHHHHHHHHHHHH-----EEEEEEE----SHHHH CS
  PF04548.11  49 kkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslgrfteede 101
                 ++i  iDTPg+++ +++      + +  ++  +e  + ++l +++++++  de
  MMETSP0890-20130614|7420_1 168 QNITLIDTPGILSGEKQRIGRDYDFQTVVQWFAERSDLIILMFDAHKLDISDE 220
                 7899**********998766666677777777777888888888886665555 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018       0.3       6     141 ..      82     252 ..      78     282 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00018
                 EEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE......................T.ESCEEEEEEE---...........-GGGHHHHHHHHHT-SEEEEEEETTS-.S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHH CS
  PF00009.22   6 igiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle......................ketkkrlinliDtPG...........HvdFskevirglrvlDgavlvvdaveG.vepqTeevlrlakklgvkiivviNKiDrv.eaelee 141
                 + ++g    GKt+++ +l+ +    ++ g e +++r++  +   + r i  ++ a+  +                      +    ++i+liDtPG             dF   v   ++  D+ +l++da++  +    + ++ +++ + +k+ v++NK D +  ++l +
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDFPGQRIGPEPTTDRFVAVMHGDQDRSIPGNALAMRSDkpfaglqgfgnrflekfqgaelDVPILQNITLIDTPGilsgekqrigrDYDFQTVVQWFAERSDLIILMFDAHKLdISDELRLAIDALRPHYTKVRVLLNKADTIsPQQLLR 252
                 6678888889999999999888777777777777899999999999999998888888889999999988888877665433778899*******96666665555556888888889*************9865999999999999999999*********996455555 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0015       2.5       2      28 ..      82     108 ..      81     124 .. 0.89
   2 ?    1.1   0.0      0.12     2e+02      60     117 ..     191     245 ..     187     267 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0015
                 EEEE-------HHHHHHHHHSSS-SS- CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeey 28 
                 ++l+G+ +vGKts++ + +  +F+ + 
  MMETSP0890-20130614|7420_1  82 VLLLGQYSVGKTSFIRSLIGRDFPGQR 108
                 689**************9999998765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.12
                 GGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGG CS
  PF00071.17  60 efkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDle 117
                 +f+++ + + + ++ i+l++d ++ +  ++++  ++ ++ + ++ v ++L  nK+D  
  MMETSP0890-20130614|7420_1 191 DFQTVVQWFAERSDLIILMFDAHKLDISDELRLAIDALRPHYTK-VRVLL--NKADTI 245
                 68999999999***********9999999999999999999885.55544..777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:01.19
# Mc/sec: 994.79
//
Query:       MMETSP0890-20130614|7423_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   63.7   0.0    2.6e-17   63.4   0.0    1.1  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   1.9e-21   2.6e-17       1     251 []      77     367 ..      77     367 .. 0.73

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1.9e-21
                 EEEEECE..........CGTHCHHHHHHHTCG-SEEEEECC-TC.....HHHHHHCHHCTTT-EEEE--------SEEE.ECTEEEEEEESCGCCEEEEEECTTS..S-ECGGCEECCTCEEEEEEEEEECTEEEEEEECHHHC.TSSTTSHHHH.HHHHHHHHHHCCHHHHSEEEE---S--BSSGH..........................................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCC...CHHB.......--S--EEBHHHCCCCEEEEECTHHCHS......SSS CS
  PF03372.18   1 ltwNvlgwnarsdr...akkldqladllqsedpDvllLQEvded.....plsellatglasglglagdgkvggggggda.lgggglallskypldksirrtfqld..gkagiavprlssknkgdvpvrfrggktlalvntHltp.gnrlrqrder.allaeidkladdsrgspvilaGDfNsrpdspd..........................................kgfrenaadflpgdgfddglrallphlllptspgttdtyeka...gepa.......rlDyilvssgwpalvvsgalllpdrgg......SDH 251
                 lt Nv g++a       +kkl+ + +++++e++D+++L+E +            + + l++       + ++ +  + +  g++g+a+lsk  l+ ++ + fq +  +++g+a+                  +++al+  + ++ g++l +  +r + ++++  ++ +s ++p++++GD+N++++  d                                          + +r++++  l ++ + d++ + +p++      ++++ty ++      +       rlDy+l+s+++ +++    +ll+ +        SDH
  MMETSP0890-20130614|7423_1  77 LTMNVAGLRAV--LdpeKKKLKNFVEIIRAENADIIFLNEHKLKtedvdT----AIERLHELIP---EYVSCHFSCSTSkKGYSGVAVLSKICLADKVSYGFQGNifPDEGRALTID--------------LGSIALLGLYVPNsGQKLERLNARvETWDRALTRYCQSINKPLLILGDLNVAHRPQDihnmylrsnfndmcleplsihaddlesqytgltalkkqagltSLERASFSQLLQEANLIDAFVHFHPQA------SGAFTYFSQravQ--NrglnrglRLDYVLASNTLLDHTSNFPRLLDAFILdkdpafSDH 367
                 699****4444..1558888999*******************77643332....2233333333...22222222333356789********9*******99777555555554322..............45888*****8884444444334445566666666666666*********************************************9999999999999999999999999999999999998887......3444444442232..24567778*******88888888887777776655777777888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       731  (0.0534669); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.94
# Mc/sec: 971.29
//
Query:       MMETSP0890-20130614|7425_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-22   76.8   0.0    1.1e-12   47.0   0.0    3.5  3  PF00018.23 SH3 domain
    2.5e-16   58.7   0.0      3e-07   29.7   0.0    2.7  3  PF07653.12 Variant SH3 domain
    5.9e-10   38.9   0.0    1.1e-09   38.1   0.0    1.4  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.055   12.6   0.0       0.16   11.1   0.0    1.8  2  PF10948.3  Protein of unknown function (DUF2635)


Domain annotation for each model (and alignments):
>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   3.1e-16   1.1e-12       2      48 .]       9      54 ..       8      54 .. 0.97
   2 !   12.6   0.0   1.7e-05     0.059       1      24 [.     238     261 ..     238     263 .. 0.95
   3 !   13.1   0.0   1.2e-05      0.04      24      48 .]     275     300 ..     271     300 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3.1e-16
                ESS-BE-SSTTS-EB-TT-EEEEEEESSSSEEEEEETTTTB---EEG CS
  PF00018.23  2 AlYDYearesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48
                A Y + a ++ ELsf kG+++ +++++ ++Wwk+++ + g  G++Ps
  MMETSP0890-20130614|7425_1  9 ARYAFVAANEHELSFVKGEKLMIISRETANWWKAKNAS-GTVGMVPS 54
                88***********************************8.79*****8 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.7e-05
                 EESS-BE-SSTTS-EB-TT-EEEE CS
  PF00018.23   1 iAlYDYearesdELsfkkGDviiv 24 
                 +Al D+++++++EL + +GD +++
  MMETSP0890-20130614|7425_1 238 RALWDFTPSSESELGLVEGDFLEI 261
                 79******************9987 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 1.2e-05
                 EEEESSS.SEEEEEETTTTB---EEG CS
  PF00018.23  24 vleksed.gWwkgrlkgtgkeGliPs 48 
                 vl+ + + gW+ gr+ +t++ G++P+
  MMETSP0890-20130614|7425_1 275 VLATEATdGWLLGRSERTKEVGYFPA 300
                 56666666*****************7 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   8.9e-11     3e-07       8      52 ..      13      57 ..      12      60 .. 0.94
   2 !   26.3   0.0     1e-09   3.5e-06       1      55 []     236     306 ..     236     306 .. 0.91
   3 ?   -4.0   0.0       2.9     1e+04      17      25 ..     362     370 ..     362     371 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 8.9e-11
                B--SS-----B----EEEEE.E-S----BEEEE.-TT---B--HHH CS
  PF07653.12  8 yvaedpeeLslkkGDvikvlgskesdgwweges.gGrvGlfPsslV 52
                +va+++ eLs+ kG+++ ++ s+e  +ww++ +  G+vG +Ps++V
  MMETSP0890-20130614|7425_1 13 FVAANEHELSFVKGEKLMII-SRETANWWKAKNaSGTVGMVPSTYV 57
                68999***************.99**********99**********9 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1e-09
                 EEEE-S-B--SS-----B----EEEEE...............E-S----BEEEE..-TT---B--HHHHHH CS
  PF07653.12   1 yvraiedyvaedpeeLslkkGDvikvl..............gskesdgwweges..gGrvGlfPsslVeev 55 
                 ++ra+ d+++++++eL l +GD++++                ++  dgw +g+s  + +vG+fP  +Ve+v
  MMETSP0890-20130614|7425_1 236 RARALWDFTPSSESELGLVEGDFLEIAvpesadisdlesvlATEATDGWLLGRSerTKEVGYFPAAYVEPV 306
                 579999**********************9999998888888888888*****99867999********996 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 2.9
                 -B----EEE CS
  PF07653.12  17 slkkGDvik 25 
                 +++ GDvi 
  MMETSP0890-20130614|7425_1 362 RIQDGDVIT 370
                 5789***96 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   3.1e-13   1.1e-09       3      94 .]     361     457 ..     359     457 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 3.1e-13
                 B---CT-EEEEEEEEEE.-.....--EEEETTTTTCEEEEECCTTS.S-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
  PF00254.23   3 kkakegdtVtvhyegkled.....gtvfdssysrakpfefkvGsgq.vikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                 +++++gd++t  ++ +  d     +t f+s+   + ++ +kvG+ +   +gl ++l g++ G+ +++t+ p +aYg+ gl +g +p+++ l++++ +l
  MMETSP0890-20130614|7425_1 361 RRIQDGDVITARCTASAWDggaglSTPFASTEWGGPDLVLKVGALDaATEGLHFALRGLCQGDSARVTCAPTMAYGDAGL-PGAVPQGSFLIYDISIL 457
                 3489************97557778999****66***********9889********************************.889***********875 PP

>> PF10948.3  Protein of unknown function (DUF2635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.9   6.6e+03      38      45 ..     208     215 ..     207     216 .. 0.81
   2 ?   11.1   0.0   4.8e-05      0.16      14      43 ..     341     371 ..     333     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.9
   PF10948.3  38 GDVvlvep 45 
                 GDV+l+e 
  MMETSP0890-20130614|7425_1 208 GDVELLEN 215
                 9**99875 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4.8e-05
   PF10948.3  14 tgklLpaeGeevprna.yWlRRladGDVvlv 43 
                 +++ L+++G  v+++a    RR++dGDV+ +
  MMETSP0890-20130614|7425_1 341 AFDALSSAGVAVEKSAgNGGRRIQDGDVITA 371
                 68999999999999999999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.95
# Mc/sec: 1339.44
//
Query:       MMETSP0890-20130614|7427_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   15.8   0.2      0.011   15.5   0.2    1.2  1  PF13424.1 Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.03   13.8   0.1      0.036   13.6   0.0    1.2  1  PF13414.1 TPR repeat
      0.036   14.0   0.1       0.24   11.4   0.0    2.0  2  PF12895.2 Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   2.3e-06     0.011       4      49 ..      17      61 ..      13      74 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.3e-06
   PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaral 49
                 a++l+n   +l +l +++eA+     a+e+l++++++++  ++al
  MMETSP0890-20130614|7427_1 17 EARLLSNETICLVKLSRWEEAIRAASAAIEILEKQKNESLL-VKAL 61
                4889999999999***********************99976.5555 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.8e-06     0.036       3      39 ..      18      60 ..      16      81 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.8e-06
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleldpnnae......l 39
                A  l ++  +l k+ +++eAi+a + A+e+ ++  +      +
  MMETSP0890-20130614|7427_1 18 ARLLSNETICLVKLSRWEEAIRAASAAIEILEKQKNesllvkA 60
                5666777778889999999999999999986554333334444 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.2e-05      0.24      56      80 ..      14      40 ..       1      44 [. 0.71
   2 ?    1.1   0.0     0.083   3.8e+02      43      58 ..      43      56 ..      40      69 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.2e-05
                CBHHHHHHHH..HHHHHTT-HHHHCCC CS
   PF12895.2 56 sslgcryllA..rcllklgkydeAiav 80
                + l++r+l +   cl+kl++++eAi++
  MMETSP0890-20130614|7427_1 14 TDLEARLLSNetICLVKLSRWEEAIRA 40
                3456677667777************86 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.083
                HHHHHHHCTSHCHCBH CS
   PF12895.2 43 rAyellrkleldsssl 58
                +A+e+l  ++++++sl
  MMETSP0890-20130614|7427_1 43 AAIEIL--EKQKNESL 56
                577777..44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.79
# Mc/sec: 251.77
//
Query:       MMETSP0890-20130614|7429_1  [L=1281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-11   41.2   0.3    9.4e-11   41.2   0.2    2.1  2  PF07529.8 HSA


Domain annotation for each model (and alignments):
>> PF07529.8  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.2   6.9e-15   9.4e-11       6      47 ..     317     358 ..     313     360 .. 0.92
   2 ?   -3.6   0.4      0.64   8.7e+03      47      64 ..     718     734 ..     717     739 .. 0.64

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 6.9e-15
   PF07529.8   6 eqrekthwdhlLeemkwmakdFreerkwkiaaakklaravaq 47 
                 + r kt+ d++L+e+kwma+d ++erkwk+aaak+++  +aq
  MMETSP0890-20130614|7429_1 317 PARTKTQVDYVLDEAKWMATDAHQERKWKVAAAKRIGIFCAQ 358
                 6699*******************************9876665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.64
   PF07529.8  47 qyhketekeeqrrkerea 64 
                 +y ++++ + ++++++  
  MMETSP0890-20130614|7429_1 718 EYRAYQNTCTEEQQKQ-S 734
                 5777888888877772.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       785  (0.0574166); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.68u 0.33s 00:00:02.00 Elapsed: 00:00:01.22
# Mc/sec: 2516.17
//
Query:       MMETSP0890-20130614|7433_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-30  106.0   6.7    6.9e-30  103.6   4.7    1.9  1  PF01025.14 GrpE
     0.0063   14.9   0.2     0.0093   14.4   0.1    1.3  1  PF11853.3  Protein of unknown function (DUF3373)
  ------ inclusion threshold ------
       0.11   12.5   0.6       0.18   11.8   0.4    1.3  1  PF11429.3  Colicin D


Domain annotation for each model (and alignments):
>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   4.7   1.5e-33   6.9e-30       7     165 ..     102     265 ..      56     266 .. 0.83

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 1.5e-33
  PF01025.14   7 eeeeedeeeeleeeleelee....evkelkdkllrllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaak.eseeveslleGvemtlkqllkvLekegvekiepegekFDpnlheAvstvesdekeegtvvevlqkGYklkdrvlRpAkVkVs 165
                  +  ++e  ++++e++e+e+    e +e+  ++++l+ ef+n++kr  + +  a++++ +++l+e+ pv Dn++ a++++k e++  +++++ +  +++ l +v ++ gv  ie++g +FDp+lh A + ++++ ++e++v+++lqkG+k+ d ++RpA V+Vs
  MMETSP0890-20130614|7433_1 102 IDVLKNELLTIDSEINEAEArraeEWAEWGPQIEQLRTEFDNVKKRESTARSSASSTERANVLREIFPVTDNFDLAFDYIKaETDGQKDIADRYAAIREDLSQVYDELGVVAIEEVGVPFDPELHTAAMFQPDPVHPEEHVATILQKGFKVLDIIVRPATVIVS 265
                 3333334444444444444433335556666666***********************************************9999999***************************************************************************8 PP

>> PF11853.3  Protein of unknown function (DUF3373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     2e-06    0.0093      25      94 ..      89     159 ..      81     213 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-06
   PF11853.3  25 adidklqkiekLkkeleelkeqlkdlkkkvekiekksagdrlkisgdf...rfrvdsleyktkalsqlmtaaa 94 
                 +d+++   +  L+k+++ lk++l  ++++++++e++ a+++ +++  +   r+++d+++++++++++ ++ ++
  MMETSP0890-20130614|7433_1  89 NDVTN--SVVFLEKKIDVLKNELLTIDSEINEAEARRAEEWAEWGPQIeqlRTEFDNVKKRESTARSSASSTE 159
                 44333..777899********************************8654449*******99777554444433 PP

>> PF11429.3  Colicin D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4     4e-05      0.18       1      53 [.      39      92 ..      39     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4e-05
                HHHHHGG.G-----------SHHHHHHHHHHHHH.HHH-TT-EE---BTT---EE CS
   PF11429.3  1 qLqkkfk.HagDfGikdknkNketltefedaike.hlasketvekgtYrkekdsk 53
                +L+kkf+    D+ i   + N et+++ e++++e   a++e+ve+gt+ +e+d+ 
  MMETSP0890-20130614|7433_1 39 NLNKKFSsQNVDHRILI-RLNSETGKNEEEKVEEeSFAKEEDVEEGTFSEENDVT 92
                69999998999999999.89*****99999997527999**********998753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.66
# Mc/sec: 976.70
//
Query:       MMETSP0890-20130614|7434_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   13.8   0.1       0.14   11.9   0.0    2.0  1  PF10431.4 C-terminal, D2-small domain, of ClpB protein
       0.17   11.6   3.7       0.89    9.3   0.6    3.2  3  PF08349.6 Protein of unknown function (DUF1722)


Domain annotation for each model (and alignments):
>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.14      41      66 ..     259     284 ..     227     297 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
                 ----TT---TTHHHHHHHHTHHHHHH CS
   PF10431.4  41 kgydpeyGARpLrriiereiedplae 66 
                 +g d   GAR Lrr++ r i+ +l +
  MMETSP0890-20130614|7434_1 259 RGQDSSSGARLLRRALSRFIKSQLLN 284
                 6899*****************99865 PP

>> PF08349.6  Protein of unknown function (DUF1722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.54   3.7e+03       7      22 ..      88     103 ..      86     110 .. 0.76
   2 ?    9.3   0.6   0.00013      0.89      62     111 ..     270     319 ..     268     321 .. 0.94
   3 ?    0.3   0.0      0.08   5.5e+02      69      91 ..     466     488 ..     453     491 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.54
   PF08349.6   7 hsqkeyrelGrlvaea 22 
                  sq++y e+G+ + +a
  MMETSP0890-20130614|7434_1  88 VSQEKYDEIGKRILRA 103
                 6899******977655 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00013
   PF08349.6  62 fkkklskeekqellelieeYreglvplvvpltllkhylrkypneYLakqt 111
                 ++++ls+  k++ll+   +++e+ + l+++ ++l++ l+k++ +Y + q+
  MMETSP0890-20130614|7434_1 270 LRRALSRFIKSQLLNAFRQWHEHYQFLIALHSVLENTLQKHKRAYFELQR 319
                 688999999************************************99886 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.08
   PF08349.6  69 eekqellelieeYreglvplvvp 91 
                  e++e+ e i++ r+++++l + 
  MMETSP0890-20130614|7434_1 466 IERREFNERIARLRQEVINLTQC 488
                 599***************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       916  (0.0669982); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:01.13
# Mc/sec: 1063.65
//
Query:       MMETSP0890-20130614|7432_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-17   60.5   0.0    1.2e-16   59.5   0.0    1.5  1  PF10509.4  Galactokinase galactose-binding signature
    3.2e-14   52.7   0.1    7.8e-14   51.5   0.1    1.6  1  PF08544.8  GHMP kinases C terminal
      2e-10   40.4   1.1    4.7e-10   39.2   0.4    2.0  2  PF00288.21 GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> PF10509.4  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.6e-20   1.2e-16       4      52 .]      45      95 ..      43      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 2.6e-20
   PF10509.4  4 Feeef.gsepev.varAPGRvNLiGEHtDYnggfVlPaAinlgtvvavskr 52
                Fe++f   + e+ +a+APGR N+iGEHtDY++gfV P+A+++++++++++r
  MMETSP0890-20130614|7432_1 45 FESAFgPGKGELrMACAPGRANIIGEHTDYQEGFVAPFALKERCYIVYRQR 95
                8999963345667**********************************9986 PP

>> PF08544.8  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.1   1.7e-17   7.8e-14       2      75 ..     341     413 ..     340     421 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 1.7e-17
   PF08544.8   2 lealeegdiellgellnenqls.eplayvgilspelrelleal.eelGalgaklsGaGgGptvfalfkdkddaeqv 75 
                 ++a+++ d+ ++g+lln+ ++s  +    ++++pel+++++a+ e++ +lga++ G G+G++ +al+ + d+a+ +
  MMETSP0890-20130614|7432_1 341 VDAAQREDWITFGKLLNQAHDSlAK--LYEVSCPELDAACQAAiESPHCLGARMMGGGFGGCAIALC-NGDPAALA 413
                 6899******************977..8***************88888*******************.87777655 PP

>> PF00288.21  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.4     1e-13   4.7e-10       3      66 ..     169     236 ..     167     237 .. 0.85
   2 ?   -3.4   0.0         2   9.2e+03      28      45 ..     363     381 ..     362     395 .. 0.56

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1e-13
                 EEEESS-TT----HHHHHHHHHHHHHHHHTT-.SS.HHHHHHHHHHHHHHTT.----SHHH.HHHHHC CS
  PF00288.21   3 vvesdiPigaGLGSSAalavalaaAllalygl.pl.deeelaklaleaekai.gkpsGidv.aaavyG 66 
                  ++s++P+g G +SS+alava a+A+ ++y   ++ +  +++k + e+e ++ g+  Gi++ +a++ G
  MMETSP0890-20130614|7432_1 169 LITSTVPMGGGVSSSSALAVASAVAARDIYRDlSWtSTYNMLKACCESEWHYsGVRGGIMDqFASLNG 236
                 689***************************63255666899********6666***999997888876 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2
                 HHHHTT-SSHHHHH.HHHH CS
  PF00288.21  28 llalyglpldeeel.akla 45 
                 l++ly+++ +e +   + a
  MMETSP0890-20130614|7432_1 363 LAKLYEVSCPELDAaCQAA 381
                 6778876654433323333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.12s 00:00:00.90 Elapsed: 00:00:01.02
# Mc/sec: 1087.76
//
Query:       MMETSP0890-20130614|7435_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0067   15.2  17.5     0.0067   15.2  12.1    2.3  2  PF04111.7  Autophagy protein Apg6
  ------ inclusion threshold ------
      0.055   12.6  14.6      0.081   12.1  10.2    1.2  1  PF00529.15 HlyD family secretion protein
        1.4    8.8  20.0        1.5    8.7  12.3    2.2  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain
        7.4    5.5  15.5         13    4.7  10.7    1.3  1  PF02601.10 Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2  12.1     2e-06    0.0067      35     143 ..     108     226 ..     102     229 .. 0.86
   2 ?   -2.2   5.7      0.38   1.3e+03      66     134 ..     229     305 ..     225     317 .. 0.54

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  35 dkelraaeeekdvYkqylekLesqnkeee..........nvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelkslelqle 143
                 ++ l+++e + d+ +++l+ Le ++ke +          +   +d+   e + ee rl   +e++e+e+++ ++ le+ q+ ++kl++ + q ++eln +k k+ +l  +l+s++ qle
  MMETSP0890-20130614|7435_1 108 EELLNIVESNYDTIAKVLDDLEIMRKERDdaleiaveaqDERLMDKLSYEYELEEMRLNFSIENIESERQSAKHVLEQAQNAAKKLDQSNIQLFEELNCLKAKNQQLTANLQSANQQLE 226
                 5568899999999999******99999988888866653333334444577888999999********************************************************987 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.38
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF04111.7  66 ealdseldeLkkeeerlleeleelekeedkl........deeleelqeekekleeeeeqylrelnkfklkkleleke 134
                 + l++  ++L+++  ++++el +++++ ++l        ++ l  l++ + kl  ++ + + el++++++ +  +++
  MMETSP0890-20130614|7435_1 229 AVLKKKTKNLERQLIQKENELVQIQQKVQQLpdpksifiEQVLIPLKQTQAKLFSQQIELFLELKEVQIELMLKDEN 305
                 33444444444444444444444444444431111111155666677777777777777777777777777766665 PP

>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  10.2   2.4e-05     0.081      78     180 ..     148     260 ..     122     313 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.4e-05
                 S..................-HHHHHHHHHHHHHH..........HHHHHHHHHHHHTTEEE-S--.-----BSS-B---------S-SEEEEEESSEEEEEEE-HHHHHHHHHHHH---- CS
  PF00529.15  78 a.................esekeadaarrearealaasqalaaskaeleaardnlasaeaalpaslgsikasqatlgalltnlqaqglaakaqldeaklqlaqtaaelarsirapaqger 180
                                    + +e+++  r+  +++++ +  ++++ +l+++ ++l ++++ l+a+ +++ a++++++++l+     +++ k +++ +++ql q ++el++  + + q+  
  MMETSP0890-20130614|7435_1 148 ErlmdklsyeyeleemrlNFSIENIESERQSAKHVLEQA--QNAAKKLDQSNIQLFEELNCLKAKNQQLTANLQSANQQLEE----LAVLKKKTKNLERQLIQKENELVQIQQKVQQL-P 260
                 133333334444465555566777777776677777777..9*************************************997....77777788888888888887777744444444.3 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  12.3   0.00044       1.5      16     100 ..     175     259 ..     165     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00044
                 HHHHH-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF02403.17  16 eklkkRgedkedvdelleldeerrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                 e++ ++++ ++  ++  +ld+   +l  el+ l+a+  +l++++++a ++ e+ + l++++k+l  +l ++e+el ++++++++l
  MMETSP0890-20130614|7435_1 175 ERQSAKHVLEQAQNAAKKLDQSNIQLFEELNCLKAKNQQLTANLQSANQQLEELAVLKKKTKNLERQLIQKENELVQIQQKVQQL 259
                 6777888999999999*****************************************************************9985 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.7    0.0038        13     148     264 ..     139     257 ..     126     306 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0038
  PF02601.10 148 lkeklknleqrlsralksklekekaklnllknrltlksrrkplskleqeeerleelkerlek.............sleqllqskesqleklnaslaknnpdyklnkklekitllkneldselssaesklr 264
                 l+  +++  +rl ++l ++ e e+++ln + +++ ++++++ ++ leq+++  ++l ++ ++             +l+  lqs+++qle+l+   +++++ ++l+++l        ++++el ++++k++
  MMETSP0890-20130614|7435_1 139 LEIAVEAQDERLMDKLSYEYELEEMRLNFSIENIESERQSA-KHVLEQAQNAAKKLDQSNIQlfeelnclkaknqQLTANLQSANQQLEELA---VLKKKTKNLERQL-------IQKENELVQIQQKVQ 257
                 5567888999999***9999999999999999998877544.45566666555555555555444444444444344444444444444422...3333333333333.......333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1765  (0.129096); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:01.13
# Mc/sec: 956.44
//
Query:       MMETSP0890-20130614|7430_1  [L=1003]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-65  219.6   0.0    5.2e-64  215.2   0.0    2.3  1  PF05362.8  Lon protease (S16) C-terminal proteolytic domain
    3.1e-25   88.9   0.1    3.1e-25   88.9   0.0    3.0  3  PF02190.11 ATP-dependent protease La (LON) domain
    8.9e-21   74.3   0.0    1.9e-20   73.2   0.0    1.6  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    8.2e-11   41.9   0.0    2.7e-10   40.3   0.0    1.9  1  PF07724.9  AAA domain (Cdc48 subfamily)
    1.8e-09   37.0   0.0    3.7e-09   36.0   0.0    1.5  1  PF13541.1  Subunit ChlI of Mg-chelatase
    5.4e-06   26.0   0.0    1.6e-05   24.5   0.0    1.8  1  PF07728.9  AAA domain (dynein-related subfamily)
    2.7e-05   24.8   0.1    0.00015   22.3   0.0    2.4  1  PF13207.1  AAA domain
    0.00018   20.1   0.0    0.00034   19.3   0.0    1.3  1  PF08298.6  PrkA AAA domain
     0.0002   21.6   1.5     0.0006   20.1   0.0    2.6  2  PF13191.1  AAA ATPase domain
    0.00052   19.7   0.0     0.0015   18.3   0.0    1.9  1  PF13173.1  AAA domain
    0.00094   18.1   0.1     0.0033   16.4   0.0    1.9  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0018   18.2   2.1      0.015   15.3   0.0    3.3  3  PF13401.1  AAA domain
     0.0022   16.6   5.5      0.013   14.0   0.1    2.7  3  PF06068.8  TIP49 C-terminus
     0.0036   16.3   0.0     0.0076   15.3   0.0    1.5  1  PF03193.11 Protein of unknown function, DUF258
      0.005   16.1   0.0     0.0098   15.2   0.0    1.4  1  PF01695.12 IstB-like ATP binding protein
     0.0064   15.7   0.0       0.02   14.1   0.0    1.8  1  PF13481.1  AAA domain
  ------ inclusion threshold ------
      0.018   15.2   0.4      0.074   13.2   0.0    2.3  1  PF13238.1  AAA domain
      0.019   14.9   2.5      0.067   13.1   1.7    2.0  2  PF07377.7  Protein of unknown function (DUF1493)
      0.019   14.3   0.0      0.026   13.9   0.0    1.3  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.021   13.8   0.0       0.77    8.7   0.0    2.4  2  PF06414.7  Zeta toxin
      0.025   14.6   0.0      0.084   12.9   0.0    1.9  1  PF00910.17 RNA helicase
       0.03   13.2   5.7       0.18   10.5   2.4    2.2  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.042   13.3   0.0       0.57    9.6   0.0    2.8  4  PF05729.7  NACHT domain
      0.052   12.6   1.2      0.077   12.1   0.0    1.8  2  PF12846.2  AAA-like domain
      0.085   12.6   0.2       0.31   10.7   0.0    2.1  2  PF13671.1  AAA domain
      0.089   12.2   0.0       0.21   11.0   0.0    1.6  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
        0.1   12.0   0.0       0.27   10.6   0.0    1.7  1  PF13479.1  AAA domain


Domain annotation for each model (and alignments):
>> PF05362.8  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0     1e-66   5.2e-64       2     202 ..     732     951 ..     731     954 .. 0.88

  Alignments for each domain:
  == domain 1    score: 215.2 bits;  conditional E-value: 1e-66
                 E-TTHHHHH----SS----------..------------XXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF05362.8   2 vtakeleeylGvkrfrseeaekedq..vGvvtGlawtevGGdlltieavlvpg..................kgklkltGklgdvmkesaqaalsyvrsraeelgidkeffekkdihihvPeGavPkdGPsaGvtlatalvsaltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragiktvilPkenekdleeiPeevkeeleiilveevdevlkaa 202
                 v++++l++++G+++f +++    +    Gvv Glawt++GG++l+ie+++++                   + +l++tG+lg vm+es ++al+ vr++ +++g+++ +++ ++ihihvPeGa+PkdGPsaG+tlatal+s+ tg++v +++amtGe++L+Grvlp+GG+kek++aa+ra i+ + lP ene+d++e+P+++k++++ +++++ d+vl++ 
  MMETSP0890-20130614|7430_1 732 VDTTNLNDFVGQPKFAKDRLYDVQIlpPGVVCGLAWTSMGGSTLYIETTKFNLippsssssdkqateknfqSPRLSTTGQLGSVMEESSRVALAHVRAKLDSIGLQS-TLNGHEIHIHVPEGATPKDGPSAGITLATALISLATGIPVPSNLAMTGELSLTGRVLPVGGIKEKVIAARRAHISYICLPYENERDFNELPDYLKQGITPYFAQTFDDVLSVT 951
                 7899**************9977665226*******************98753211122222222222111134799*****************************96.7889**********************************************************************************************************876 PP

>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   6.1e-28   3.1e-25      10     204 ..      91     326 ..      89     327 .. 0.77
   2 ?   -2.1   2.3       4.4   2.2e+03     135     193 ..     365     434 ..     330     435 .. 0.59
   3 ?   -0.7   0.0       1.6   8.3e+02     127     171 ..     676     734 ..     622     742 .. 0.62

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 6.1e-28
  PF02190.11  10 kvLfPgiilplnvsepksialierlldrdkpyvglfll.............ksqkddidepsisel............................................ysvGtvarIvqilklddgrykivvegleRvkikelkekekeepylvarverieddepedseslkkelkalvkeiiekikkarenlklllelell.lkykdlknpgrLadlvaailpfsneekqelLeeldveeRlkkllellk 204
                 +v fPg++  l++s p + ++i + ++ ++py+glfl              +                                                          + vGt+a+++ +++++dg  + +v +++R+  + +k+ +k+ p+   +v+  +  e+   ++ + e++a+ +ei+ +i+++ ++++l++e  +   ++ d+++p++Lad+++++  ++  ++q+ Le+ +v  Rl+++lel++
  MMETSP0890-20130614|7430_1  91 RVRFPGMVHSLHLS-PEATRAITAERQAGRPYLGLFLRkenksssegqsseE-------------EndglrknsfeeegdkseafsqsirtlpleilsefqkdidpndiiHTVGTFAQVHTMQEMPDGGSQALVLVHRRLTFDGIKS-TKRLPP-LLKVKHWQK-EEINQNESSNEIRAISNEIVATIRELVQMNPLYREHMQFfAQRIDISDPYKLADFACSLATGDSPQLQQALEAKNVLHRLNIALELVS 326
                 678***********.88889***99999999*******55444444333330.............223334444455555555555555666666666666666666666***********************************66.688888.99**88844.4444455559***************77777776665554056999****************************************986 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 4.4
  PF02190.11 135 e..........iiekikk...arenlklllelelllkykdlknpgrLadlvaailpfsneekqelLeeldve 193
                 e          +i+k+++   + ++  +++  e ll+ ++ k+   L+ +va     ++ +k+++Le++++e
  MMETSP0890-20130614|7430_1 365 ElgletddkeaLIQKFQHklnVLDYPEKYK--EELLEDEQNKESLGLVPIVAKKAIEEELQKLQMLEKNSAE 434
                 333334444444444443444444444443..44455555566666999999999899999999**999875 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.6
  PF02190.11 127 kelkalvkeiiekikk.............arenlklllelelllkykdlknpgr.Ladl 171
                 ++l +++ +++ ++ k             + e+++  l +  +++ + ++np + L+d 
  MMETSP0890-20130614|7430_1 676 QNLPSITDDALRALIKghareagvrslqkLIEKICRKLAFKKVQQTEITENPKQlLVDT 734
                 44444444433333333333444444444446666666677777777777777777765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   3.8e-23   1.9e-20       1     128 [.     499     639 ..     499     643 .. 0.94

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 3.8e-23
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSS.........T-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT............S.TEEEEEE-SSGGGS-HHHHHTTSCCEE CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk............eskvivigatnrpdkldpallrgRfdrki 128
                 ++++GppG+GKT++a+++a+ l+++f+++s+  l +          y+g+++ k  + +k+ k+++    +++DEid++++s      + + + +++Ll+ ld  ++              s++++i+++n  ++++ +ll +R++++ 
  MMETSP0890-20130614|7430_1 499 LCFIGPPGVGKTSIASSIAQALNRDFVRFSVGGLSDVaeikghrrtYIGAMAGKPIQALKSSKSMN--PLILLDEIDKIGSSA-----SGRGDPASALLELLDPSQNAhfldhyldipvdFSNCLFICTANVDHTIPTPLL-DRMEIIR 639
                 589********************99999999999966889999999***************99999..9**********9999.....78999***************************777******************.***9875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   5.3e-13   2.7e-10       7     134 ..     500     628 ..     495     675 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 5.3e-13
                 EEE-------HHHHHHHHHHTT-....--EEEEGGG---.----THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH---EE-...----.--EE-TT--EEEE------TT CS
   PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselle.eeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileggtlt...dkqg.rkvdtknilfImtgafgsski 134
                  ++gp gvGkt +a ++a+ l+ ++  ++ +   s+++e +   ++++    g+p    +  ++    +llDEidKi +     +   r +   +LL +l+ ++     d++   +vd++n+lfI+t +++ + +
  MMETSP0890-20130614|7430_1 500 CFIGPPGVGKTSIASSIAQALN-RDFVRFSVGGLSDVAEiKGHRRTYIGAMAGKPIQALKSSKSMnpLILLDEIDKIGS-----SASGRGDPASALLELLDPSQNAhflDHYLdIPVDFSNCLFICTANVDHTIP 628
                 599*******************.78888888888888775555566666666666544444444378************.....3444568899*******9987777777766***************987665 PP

>> PF13541.1  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   7.3e-12   3.7e-09      15     121 .]     809     921 ..     798     921 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 7.3e-12
   PF13541.1  15 vGlpdtavkesk....ervrsalkn..sgfefpakritvnLaPAdlkkeGsafDLpialgilaaleqkealeetlflGELsLdGelrpvrgvlpivlaareagikkvivpken 121
                 +G  ++  +es       vr+ l +   + +++ ++i + +  +  +k+G++  + +a ++++ +  +++ +++++ GELsL+G++ pv g+ + v+aar+a+i+ + +p en
  MMETSP0890-20130614|7430_1 809 TGQLGSVMEESSrvalAHVRAKLDSigLQSTLNGHEIHIHVPEGATPKDGPSAGITLATALISLATGIPVPSNLAMTGELSLTGRVLPVGGIKEKVIAARRAHISYICLPYEN 921
                 555555555554222245666666644455678899999**9999*****************************************************************987 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.2e-08   1.6e-05       2      81 ..     499     579 ..     498     595 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.2e-08
                 EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------.G-SEEEEESGGG---HH CS
   PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar.egeilvlDEveraesev 81 
                 ++ +GppG+gK+++a ++a+alnr ++          +++kg+r++  g  + ++  + ++ +     ++lDE++++ s++
  MMETSP0890-20130614|7430_1 499 LCFIGPPGVGKTSIASSIAQALNRDFVRFSVGGLSDVAEIKGHRRTYIGAMAGKPIQALKSSKsMNPLILLDEIDKIGSSA 579
                 799******************************************98777777776666666656779999****998875 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     3e-07   0.00015       1      42 [.     498     538 ..     498     627 .. 0.53

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3e-07
                 EE--B--TT---HHHHHHHHHHS..TEEEEEGGGB--GGGS-B- CS
   PF13207.1   1 viaitGppGsGKsTlakeLaerl..glpvlslddllreeglkel 42 
                 + +++GppG+GK+++a  +a++l  +++ +s + l    +++e+
  MMETSP0890-20130614|7430_1 498 ILCFIGPPGVGKTSIASSIAQALnrDFVRFSVGGL-S--DVAEI 538
                 5799*******************555888898884.2..22222 PP

>> PF08298.6  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.7e-07   0.00034      56     114 ..     464     522 ..     451     535 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 6.7e-07
   PF08298.6  56 ypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkllea 114
                  ++++ + +G+ e+ ++i+e +     ++  + +il ++GP g Gk+s++ ++ ++l+ 
  MMETSP0890-20130614|7430_1 464 QQILDAEHYGMAEVKDRILELIAIGKLKGSIKGKILCFIGPPGVGKTSIASSIAQALNR 522
                 4678899**********************************************999976 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       6.8   3.5e+03      48      91 ..     335     375 ..     306     407 .. 0.66
   2 !   20.1   0.0   1.2e-06    0.0006      24      62 ..     493     535 ..     470     602 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 6.8
   PF13191.1  48 llerlrfaagkfdqllrn.lpysaiiqalrellrqlltelaaelg 91 
                  ++  ++ ++k++  +rn l    + ++l+++ ++l+ e++++++
  MMETSP0890-20130614|7430_1 335 QQQISQQVEAKISSQQRNfL----LHEQLKAIKKELGLETDDKEA 375
                 33444445555555555521....223366666666666555555 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.2e-06
   PF13191.1  24 p....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdql 62 
                 +    +l+++Gp+G+GK+s++ ++a+++ ++ +rf  g+ +++
  MMETSP0890-20130614|7430_1 493 SikgkILCFIGPPGVGKTSIASSIAQALNRDFVRFSVGGLSDV 535
                 235569*****************99999999999988887765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-06    0.0015       2     126 ..     496     647 ..     495     649 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.9e-06
   PF13173.1   2 rkilvitGpRrvGKttllkqlakellkeesilyinlddeel........rkladpe........llelfleklkekkkylflDEiqev....................pewedalkslvd...dgrnldviltGsnskllskeiatslagrveeielyplsfeE 126
                 +kil+ +Gp +vGKt ++  +a+ l   ++++ +++   ++        r     +          +++ +  k+ + +++lDEi ++                     +   +l++++d   d +n+ +i+t        + i t l +r+e i+l   ++eE
  MMETSP0890-20130614|7430_1 496 GKILCFIGPPGVGKTSIASSIAQALN--RDFVRFSVGGLSDvaeikghrR-----TyigamagkPIQALKS-SKSMNPLILLDEIDKIgssasgrgdpasallelldpSQNAHFLDHYLDipvDFSNCLFICTANV----DHTIPTPLLDRMEIIRLAGYDLEE 647
                 799******************98888..8999999877666433333220.....1233322211222222.2336789*********999999999999999999986677788888885555588888888763....355788888888888888888887 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.5e-06    0.0033      24      78 ..     469     524 ..     452     540 .. 0.81
   2 ?   -3.4   0.0       6.8   3.5e+03      12      33 ..     726     747 ..     718     751 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.5e-06
   PF05496.7  24 eeyigqekvkeklkifieaakkreealdhvl.lyGpPGlGkttlakiiakelgvel 78 
                 +e+ g  +vk+++  +i+  k +++    +l ++GpPG+Gkt++a+ ia+ l+ ++
  MMETSP0890-20130614|7430_1 469 AEHYGMAEVKDRILELIAIGKLKGSIKGKILcFIGPPGVGKTSIASSIAQALNRDF 524
                 4788999999999999999999999999888578****************999876 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.8
   PF05496.7  12 eevekslrPksleeyigqekvk 33 
                 + ++  +  ++l++++gq k  
  MMETSP0890-20130614|7430_1 726 NPKQLLVDTTNLNDFVGQPKFA 747
                 455556677899******9865 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.3   2.2e+03      92      92 ..     355     355 ..     299     390 .. 0.51
   2 !   15.3   0.0   2.9e-05     0.015       4     100 ..     496     578 ..     491     604 .. 0.67
   3 ?   -2.5   0.0       8.8   4.5e+03      50      64 ..     701     715 ..     668     736 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 4.3
   PF13401.1  92 i 92 
                 +
  MMETSP0890-20130614|7430_1 355 L 355
                 1 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.9e-05
   PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt..rlliiDEaqrL..s 100
                  +il+++G++GvGKT  +  +a+ l        ++++v++ +   ++  e+       +g           +  +  +al++ +   +l+++DE++ +  s
  MMETSP0890-20130614|7430_1 496 GKILCFIGPPGVGKTSIASSIAQAL--------NRDFVRFSVGGLSDVAEIKGHRRTYIGA----------MAGKPIQALKSSKSmnPLILLDEIDKIgsS 578
                 6799*******************99........8888888887777555554444444443..........333344444444444667777777777541 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 8.8
   PF13401.1  50 spkellqkllsalgl 64 
                 s ++l +k++++l  
  MMETSP0890-20130614|7430_1 701 SLQKLIEKICRKLAF 715
                 455555555555543 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       4.5   2.3e+03     113     163 ..     310     360 ..     308     378 .. 0.73
   2 !   14.0   0.1   2.6e-05     0.013      45      78 ..     491     524 ..     474     539 .. 0.79
   3 ?    4.5   0.0      0.02        10     329     357 ..     624     652 ..     619     668 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4.5
   PF06068.8 113 eekevleGevveleveeaenplskekkikevkitlkttkeekklklgskii 163
                 e k+vl    + le++++e++ls+ +++ ++++  k + +++++ l++++ 
  MMETSP0890-20130614|7430_1 310 EAKNVLHRLNIALELVSKERELSRIQQQISQQVEAKISSQQRNFLLHEQLK 360
                 566677777777888888888886666667778888888888888888764 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.6e-05
   PF06068.8  45 ekklaGravLlaGppgtGktalaiaiskelgedv 78 
                 ++ + G+ + + Gppg Gkt++a +i+++l++d 
  MMETSP0890-20130614|7430_1 491 KGSIKGKILCFIGPPGVGKTSIASSIAQALNRDF 524
                 3567899***********************9763 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.02
   PF06068.8 329 phGipvDlldRlliiktepytkeeikkil 357
                  h ip+ lldR+ ii+   y+ ee  +i 
  MMETSP0890-20130614|7430_1 624 DHTIPTPLLDRMEIIRLAGYDLEEKLHIA 652
                 699*******************9998875 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05    0.0076      22      60 ..     483     521 ..     460     549 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.5e-05
                 HHTT-HHHHHHCTTSBEEEE-------HHHHHHH----- CS
  PF03193.11  22 tkegleelaellkdktsvlvGqSGvGKSsLinallpeld 60 
                 +  ++ +l+  +k+k+ +++G+ GvGK+s+  ++++ l+
  MMETSP0890-20130614|7430_1 483 ELIAIGKLKGSIKGKILCFIGPPGVGKTSIASSIAQALN 521
                 55678899**********************999988764 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-05    0.0098      47      73 ..     496     522 ..     459     573 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-05
  PF01695.12  47 aenlvllGpsGvGKthlAialgveavr 73 
                  + l+++Gp+GvGKt +A +++++  r
  MMETSP0890-20130614|7430_1 496 GKILCFIGPPGVGKTSIASSIAQALNR 522
                 56799****************987655 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.9e-05      0.02      32      57 ..     495     520 ..     479     532 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.9e-05
   PF13481.1  32 rgsltllaGapgtGKStlalqlaaav 57 
                 +g +++++G+pg+GK+++a ++a a+
  MMETSP0890-20130614|7430_1 495 KGKILCFIGPPGVGKTSIASSIAQAL 520
                 7999*******************986 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00015     0.074       2      24 ..     500     530 ..     499     586 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00015
   PF13238.1   2 litGtpGvGKtTlakeLaerl........gd 24 
                 ++ G+pGvGKt++a  +a+ l        + 
  MMETSP0890-20130614|7430_1 500 CFIGPPGVGKTSIASSIAQALnrdfvrfsVG 530
                 679***************9987666655544 PP

>> PF07377.7  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.7   0.00013     0.067       3      99 ..     333     428 ..     331     436 .. 0.66
   2 ?   -1.6   0.0       4.9   2.5e+03      46      65 ..     426     445 ..     416     458 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00013
   PF07377.7   3 siekeilefvreeagtklfkkkkeltld.tdleedLkldgddaeellekffkkFnVdlsnfeier.YFkpeeesplssilsplkkkevervkpltigML 99 
                  i+++i + v+++++ +  +++  l+++ ++++++L+l+ dd e l++kf++k nV     ++++   + e+++++  ++ ++ kk++e      ++ML
  MMETSP0890-20130614|7430_1 333 RIQQQISQQVEAKISSQ--QRNFLLHEQlKAIKKELGLETDDKEALIQKFQHKLNVLDYPEKYKEeLLEDEQNKESLGLVPIVAKKAIEEE-LQKLQML 428
                 68899999999988765..3444454443689***********************965544444403444444445555555555555544.4455666 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 4.9
   PF07377.7  46 ellekffkkFnVdlsnfeie 65 
                 ++lek + +FnV +s +e+ 
  MMETSP0890-20130614|7430_1 426 QMLEKNSAEFNVTRSYLEWL 445
                 67999999*****9999996 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.1e-05     0.026      12      45 ..     493     527 ..     484     893 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.1e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  PF00006.20  12 ivqGqttlipGafgcGktvisqslsknsnsdai.i 45 
                  ++G+  + +G++g+Gkt+i++s+++  n+d +  
  MMETSP0890-20130614|7430_1 493 SIKGKILCFIGPPGVGKTSIASSIAQALNRDFVrF 527
                 689**************************998753 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0015      0.77      23      48 ..     503     527 ..     493     532 .. 0.89
   2 ?    2.4   0.0      0.13        66      38     125 ..     671     756 ..     664     770 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
   PF06414.7  23 GqpGAGKtslaellleelaagnivri 48 
                 G+pG GKts+a+ + ++l ++++vr+
  MMETSP0890-20130614|7430_1 503 GPPGVGKTSIASSIAQAL-NRDFVRF 527
                 9*****************.9999987 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.13
   PF06414.7  38 eelaagnivridaDelrkyhpayrelekkdpkeaseltqkdaselveklid..ralekgyniilegtlrspdkarkiarklkkagykvev 125
                 e+++++n   i  D lr ++   ++  +++ +++ +l +k +++l+ k ++  +++e+ + +++++t  ++ +    ++ +k++ y+v++
  MMETSP0890-20130614|7430_1 671 ESTNNQNLPSITDDALRALIKGHAR--EAGVRSLQKLIEKICRKLAFKKVQqtEITENPKQLLVDTTNLNDFVG--QPKFAKDRLYDVQI 756
                 4445889999999******987555..78***************99775541178**********885554443..57777778888877 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00017     0.084       1      27 [.     499     537 ..     499     594 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00017
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl............k 27 
                 +++ Gp+g+GK+++a ++a+al +++            +
  MMETSP0890-20130614|7430_1 499 LCFIGPPGVGKTSIASSIAQALNRDFvrfsvgglsdvaE 537
                 5899******************98875555555555544 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.4   0.00036      0.18     137     260 ..     326     449 ..     317     469 .. 0.75
   2 ?    2.2   0.0      0.13        64       6      25 ..     502     520 ..     497     548 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00036
   PF09848.4 137 aseeelkklakkleaeieeklhLksqfRsaaseayiewvdalldkkkekakplssqedyeikvfddleelkkaikeknkesgrsrlvatydwerleekkkkkssakdieiee..gdfklpWnleek 260
                  +e+el+++ +++ +++e   + +sq R +   + ++ +++ l  +++ ++ l ++ + +++v+d +e+ k+++ e ++++++ +lv   + +  ee+ +k +  ++   e    +  l+W  + +
  MMETSP0890-20130614|7430_1 326 SKERELSRIQQQISQQVEA--KISSQQRNFLLHEQLKAIKKELGLETDDKEALIQKFQHKLNVLDYPEKYKEELLEDEQNKESLGLVPIVAKKAIEEELQKLQMLEKNSAEFnvTRSYLEWLTSIP 449
                 5667799999999999876..6*******************************9999999***************************999999994444443333333332211223346655555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.13
   PF09848.4   6 vtGvaGtGKtvvalnllael 25 
                 + G +G GKt +a++++++l
  MMETSP0890-20130614|7430_1 502 I-GPPGVGKTSIASSIAQAL 520
                 4.99************9998 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.8     4e+03      84     100 ..     209     236 ..     167     255 .. 0.71
   2 ?    9.6   0.0    0.0011      0.57       3      26 ..     499     522 ..     497     527 .. 0.90
   3 ?   -1.5   0.0       2.9   1.5e+03      84     114 ..     566     593 ..     533     600 .. 0.68
   4 ?   -3.0   0.0       8.5   4.3e+03      53      84 ..     704     731 ..     693     741 .. 0.56

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 7.8
   PF05729.7  84 L......lilDglDelvsdlgq.....l 100
                 L      l++Dg+  +++ ++      +
  MMETSP0890-20130614|7430_1 209 LvlvhrrLTFDGIKSTKRLPPLlkvkhW 236
                 2334555789999999887777443332 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0011
   PF05729.7   3 vilqGeaGsGKTtLlqklasawak 26 
                 ++  G++G+GKT  + ++a+a+ +
  MMETSP0890-20130614|7430_1 499 LCFIGPPGVGKTSIASSIAQALNR 522
                 7899****************9976 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 2.9
   PF05729.7  84 LlilDglDelvsdlgqlkekqpvrtlLseli 114
                 L++lD +D++ s  +   ++  +   L el+
  MMETSP0890-20130614|7430_1 566 LILLDEIDKIGSSAS---GRGDPASALLELL 593
                 599******999544...4666666676666 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 8.5
   PF05729.7  53 sladlLfsqlpepaapvsevwivllelperlL 84 
                  l++ ++++l  ++ +++e    ++e+p++lL
  MMETSP0890-20130614|7430_1 704 KLIEKICRKLAFKKVQQTE----ITENPKQLL 731
                 3333344444444444444....777777776 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       6.1   3.1e+03      88     151 ..     330     391 ..     278     435 .. 0.52
   2 ?   12.1   0.0   0.00015     0.077       5     171 ..     500     709 ..     497     749 .. 0.53

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.1
   PF12846.2  88 eldlllalletdselrnrpledeeeaalsralrelyeeegia.tlaqrqayPtlgdllealreee 151
                 el+ + + ++   ++ + ++++++++ l +   +++++e +  t+ ++  +  + + l++l+ +e
  MMETSP0890-20130614|7430_1 330 ELSRIQQQIS---QQVEAKISSQQRNFLLHEQLKAIKKELGLeTDDKEALIQKFQHKLNVLDYPE 391
                 4444444333...4444555555555544444444444444411111111122333333333333 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00015
   PF12846.2   5 lilGppGsGKSvllkklvlqlla..rgprvvii...Dp...ggeysglaralggqvidlgegkgislNPfdigpteagaekleaea...............................................................dphsreldlllalletdselrnrpledeeeaalsralrelyeeegia..................tlaqrqayPt.lgdllealreeeeelaeealarderreaaeel 171
                 +++GppG GK++ + +++ +l +   +  v      D+   +g  ++++ a+ g+ i+  ++++  +NP+ + +    + k    a                                                                                                     +l e+ +ia                  + +++q+ P  ++d l+al ++    a+ea +r+  ++ +e++
  MMETSP0890-20130614|7430_1 500 CFIGPPGVGKTSIASSIAQALNRdfVRFSV--GglsDVaeiKGHRRTYIGAMAGKPIQALKSSKS-MNPLILLD---EIDKIGSSAsgrgdpasallelldpsqnahfldhyldipvdfsnclfictanvdhtiptplldrmeiirlagY-------------------------------------DLEEKLHIAhnylvpraleatglqekeESTNNQNLPSiTDDALRALIKGH---AREAGVRSL-QKLIEKI 709
                 789********9999995444441122333..234644444***********************9.****9888...4444443334467777777777777776655555544444444444444444444444444444444444443.....................................33333333344444444444444444444444444443333333322222...222222222.2222222 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00062      0.31       2      27 ..     499     526 ..     498     555 .. 0.87
   2 ?   -2.8   0.0       9.4   4.8e+03      51      80 ..     706     737 ..     674     739 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00062
   PF13671.1   2 vllvGlpGsGKstlaerllkklg..yvr 27 
                 + ++G+pG GK+  a +++++l   +vr
  MMETSP0890-20130614|7430_1 499 LCFIGPPGVGKTSIASSIAQALNrdFVR 526
                 679****************999755555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 9.4
   PF13671.1  51 vlkrlyqilnklarkal..sagrsvivdatnl 80 
                  +k +++  +k ++++   ++ ++ +vd tnl
  MMETSP0890-20130614|7430_1 706 IEKICRKLAFKKVQQTEitENPKQLLVDTTNL 737
                 33444444444443332115557788888887 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00042      0.21       6      44 ..     503     541 ..     498     613 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00042
   PF07726.6   6 gvPGlaktllvkalakaldlefkriqftpdllPsdilGt 44 
                 g PG++kt +++++a+al+ +f r  +      ++i G+
  MMETSP0890-20130614|7430_1 503 GPPGVGKTSIASSIAQALNRDFVRFSVGGLSDVAEIKGH 541
                 78*********************9877654444566665 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00053      0.27       5      27 ..     498     520 ..     494     529 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00053
   PF13479.1   5 kvliYGkpGiGKTslaktlpktl 27 
                  ++  G+pG+GKTs a+++ ++l
  MMETSP0890-20130614|7430_1 498 ILCFIGPPGVGKTSIASSIAQAL 520
                 57889************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.63u 0.42s 00:00:02.04 Elapsed: 00:00:01.07
# Mc/sec: 2246.30
//
Query:       MMETSP0890-20130614|7438_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-16   58.2   1.9    8.9e-16   57.5   1.3    1.4  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    3.5e-13   49.3   0.1    4.7e-13   48.9   0.1    1.2  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.059   13.2   0.2       0.15   11.9   0.0    1.7  2  PF02969.12 TATA box binding protein associated factor (TAF)


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   1.3     2e-19   8.9e-16       1      64 [.       2      73 ..       2      74 .. 0.92

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 2e-19
                ----HHHHHHHHHHH.TT--........B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHH CS
  PF00808.18  1 aeLPiarvkkImksd.pdark.......iskdAkeliaecveefieelaseAaeickkekrKTikaedikla 64
                +eLP+ar+kkImk   + +++       +s+d + ++a+++e fi e++++A+ ++ ++kr+T+++ di  a
  MMETSP0890-20130614|7438_1  2 TELPLARIKKIMKIEdEVEARlghrncmVSSDTPLVFAKACEIFIMEITERAWNVTIENKRRTLQKCDIIEA 73
                59************95655558999999****************************************9876 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1     1e-16   4.7e-13       8      71 ..       3      73 ..       1      75 [. 0.92

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1e-16
  PF00125.19  8 klpvsRvvrelkegfyae.......lrisaealvalqealedlleeiledAgllaehakrktitprdiqlA 71
                 lp +R+ + +k + + e       +++s++++++ ++a+e +++ei+e A+++++++kr+t+++ di  A
  MMETSP0890-20130614|7438_1  3 ELPLARIKKIMKIEDEVEarlghrnCMVSSDTPLVFAKACEIFIMEITERAWNVTIENKRRTLQKCDIIEA 73
                689999999999988888889999*******************************************9766 PP

>> PF02969.12  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.38   1.7e+03      37      42 ..       9      14 ..       6      34 .. 0.61
   2 ?   11.9   0.0   3.3e-05      0.15      22      64 ..      31      73 ..      27      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.38
                HHHHHH CS
  PF02969.12 37 lkeivq 42
                +k+i++
  MMETSP0890-20130614|7438_1  9 IKKIMK 14
                555553 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.3e-05
                -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHH CS
  PF02969.12 22 sdeaaalLaedveyrlkeivqealkfmrhskRqkLtvaDvdsA 64
                s ++  + a+  e+ + ei++ a   +   kR++L  +D+ +A
  MMETSP0890-20130614|7438_1 31 SSDTPLVFAKACEIFIMEITERAWNVTIENKRRTLQKCDIIEA 73
                667778889999999************************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 400.59
//
Query:       MMETSP0890-20130614|7442_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1617  (0.118271); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:01.21
# Mc/sec: 806.05
//
Query:       MMETSP0890-20130614|7437_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1275.81
//
Query:       MMETSP0890-20130614|7444_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 406.34
//
Query:       MMETSP0890-20130614|7443_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-10   39.4   0.2    3.5e-09   36.5   0.1    2.2  2  PF00307.26 Calponin homology (CH) domain
     0.0019   17.7   0.0     0.0048   16.4   0.0    1.6  1  PF11971.3  CAMSAP CH domain


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.11   7.4e+02      19      48 ..     358     389 ..     323     429 .. 0.72
   2 !   36.5   0.1   5.1e-13   3.5e-09       4     107 ..     708     816 ..     705     818 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.11
                 SSHSHHHHHTCTS..HHHHHHHHHHSTTSSSG CS
  PF00307.26  19 rqvenlskdlsDG..vaLaallhkycpdlvdl 48 
                 +  +n+++dls +  vaL+++++ + +d +d 
  MMETSP0890-20130614|7443_1 358 VLLSNFESDLSESqkVALLEVIDNLEEDEFDD 389
                 44569999999985568999999999986543 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 5.1e-13
                 HHHHHHHHHTTSTCTSSHS.........HHHHHTCTSHHHHHHHHHHSTTSSSGGGS.TCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHTST-HHHHHHHHHHHHHH CS
  PF00307.26   4 llrWinkvlekleqsrqve.........nlskdlsDGvaLaallhkycpdlvdledi.skclke.svadsleNlqlalefaeeklgvscvl..tledllysgnkknvlaflaeLfrr 107
                 +l W+ k++ +   ++ v+         ++ + l+DGv+L++ll+k+cp+++  + i ++   +  ++++l N++ ++  +++ lg+++    +++dl +  n + vl +l++L rr
  MMETSP0890-20130614|7443_1 708 ALIWVLKLTDES--QVDVStipfdnvhlQFGEMLQDGVLLCKLLNKICPGTI--KPIpKP---TtIAFKQLSNISSFCRGCQK-LGLQKREcfDAQDLQKFDNLRAVLDTLHALNRR 816
                 567888888776..555556678888889999******************76..666222...2378**************99.999988888*****9899999999999999876 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     7e-07    0.0048      19      74 ..     738     789 ..     726     800 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7e-07
   PF11971.3  19 dlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefceekLgnkvs 74 
                  l+DGv+L++l++  cP  ++   i  k+t+  +++l N++ ++  c++ Lg ++ 
  MMETSP0890-20130614|7443_1 738 MLQDGVLLCKLLNKICPGTIKP--IP-KPTTIAFKQLSNISSFCRGCQK-LGLQKR 789
                 689*****************77..98.999999*************998.777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2453  (0.179418); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                       230  (0.0168227); expected 13.7 (0.001)
Passed Fwd filter:                        64  (0.0046811); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.82u 0.45s 00:00:04.26 Elapsed: 00:00:02.14
# Mc/sec: 933.91
//
Query:       MMETSP0890-20130614|7445_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21   10.5   9.6       0.31   10.0   6.7    1.2  1  PF05477.6 Surfeit locus protein 2 (SURF2)


Domain annotation for each model (and alignments):
>> PF05477.6  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.7   2.3e-05      0.31     157     238 ..      34     110 ..      12     122 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.3e-05
   PF05477.6 157 PkssdeddadseDsmsDlyPpelftkkelekeqdtdeeddFetddedemeveseekeqkrskkqseslkkkfkkahkkkkkk 238
                   ss+e+d++ e s+ Dl   +  tkk+ + e ++ ee+dFet  +      +ee+ + ++kk +   ++k+k+a+ +k + 
  MMETSP0890-20130614|7445_1  34 W-SSEEEDESLEGSIVDL---TTTTKKNRD-EFEDSEEEDFETAMKGVVSRCEEERIKPKKKKTKLTESEKLKRAEARKDER 110
                 3.457777999*******...555555555.55558899*****55333333333333333444445566777776666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1180  (0.0863078); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.44s 00:00:01.27 Elapsed: 00:00:00.85
# Mc/sec: 1122.06
//
Query:       MMETSP0890-20130614|7446_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-06   26.4   0.1    3.7e-05   23.7   0.1    2.4  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   2.7e-09   3.7e-05       3     103 ..     175     350 ..     173     351 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.7e-09
                 BEEEEEEEE.TSSSCEEEEEEEEETTEEEEESSSST............................................................TCECSECEEEECGGEEEEEEEETTS.....................S..............C...TTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
  PF00169.24   3 keGyllkks.ellktwkkryfvLtsnyLlyfksskk............................................................ksykapkgsiplndctvkkasstkf.....................a..............l...qkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                 k G+llk+s +++  w++r +vL +++L y+++                                                               +                       +                     +              +   + + ++ +ei++ ++ ++++ a s     +W++ ++ ++
  MMETSP0890-20130614|7446_1 175 KIGTLLKRSeKDQNLWRRRICVLVDDRLWYWRDTIMpssttarggcgalkeesddtifkldtknpdtiatkkkkneafxssagtttaarhhkpsqlN-----------------------KpaiidtrtsydpyeleydriiRsraaciplasnivtEisgKRDIPHGIEISTASR-TLIFRAHSRTAQLDWLEHIRTAI 350
                 6799*****99999*******************999999*********9966666666666666666666665555555444444444443333330.......................1444444433333444444433034444444444443144568*************.*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:01.02
# Mc/sec: 1160.59
//
Query:       MMETSP0890-20130614|7439_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-10   38.1   0.1      0.019   14.5   0.0    3.6  3  PF06743.10 FAST kinase-like protein, subdomain 1
     0.0012   18.3   3.7      0.049   13.1   0.1    3.3  3  PF07671.6  Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00012      0.84      22      50 ..     145     173 ..     139     177 .. 0.89
   2 !   10.3   0.0   5.6e-05      0.38      21      50 ..     181     210 ..     175     216 .. 0.91
   3 !   14.5   0.0   2.7e-06     0.019      18      50 ..     215     247 ..     211     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00012
  PF06743.10  22 feklasalereLdsispelllnlvwSlcl 50 
                 +++la a++++ + ++p++l n+ w+++ 
  MMETSP0890-20130614|7439_1 145 MRSLADACTEQVNNFEPQHLANVSWAFAT 173
                 78999**********************97 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.6e-05
  PF06743.10  21 ffeklasalereLdsispelllnlvwSlcl 50 
                 +f+++a a  ++Ld++ p++l n+ w+++ 
  MMETSP0890-20130614|7439_1 181 LFNAIADAALTKLDGFTPQNLANTSWAFAT 210
                 8999***********************986 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 2.7e-06
  PF06743.10  18 aeeffeklasalereLdsispelllnlvwSlcl 50 
                 a ++f+++a a  ++Ld+++p++l n+ w+++ 
  MMETSP0890-20130614|7439_1 215 APALFNAIAAAALKKLDKFNPQELANTAWAFAT 247
                 6789***************************86 PP

>> PF07671.6  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.055   3.7e+02      24      36 ..     155     167 ..     146     167 .. 0.81
   2 !    3.6   0.0    0.0067        46      17      36 ..     181     204 ..     178     204 .. 0.84
   3 !   13.1   0.1   7.2e-06     0.049      17      36 ..     218     241 ..     215     241 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.055
   PF07671.6  24 naerFNpQsIANt 36 
                  ++ F pQ  AN+
  MMETSP0890-20130614|7439_1 155 QVNNFEPQHLANV 167
                 5899*****9995 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0067
   PF07671.6  17 LlaAIr....rnaerFNpQsIANt 36 
                 L++AI+         F pQ+ ANt
  MMETSP0890-20130614|7439_1 181 LFNAIAdaalTKLDGFTPQNLANT 204
                 778888888888899********9 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 7.2e-06
   PF07671.6  17 LlaAIr....rnaerFNpQsIANt 36 
                 L++AI+    +    FNpQ+ ANt
  MMETSP0890-20130614|7439_1 218 LFNAIAaaalKKLDKFNPQELANT 241
                 9999999999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:01.39
# Mc/sec: 437.90
//
Query:       MMETSP0890-20130614|7449_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-12   46.1   0.0    7.8e-12   45.2   0.0    1.4  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
     0.0028   17.5   1.4     0.0056   16.5   1.0    1.5  1  PF01966.17 HD domain
  ------ inclusion threshold ------
      0.017   14.7   0.3      0.033   13.7   0.2    1.5  1  PF13328.1  HD domain


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.7e-15   7.8e-12     170     258 .]      10     110 ..       3     110 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.7e-15
                 EEESEEE---.-EEEE---TT.....TB..........-S---S-HH....HHHHHHHHSTTT-EEE------EEEE-TTT-BB----------S-EEE-EE CS
  PF02668.11 170 rhPlvrthpv.tgekvlyvnp.latkiq....gl...vtlaeseell....kaledhltdpeftyrhkwqeGdlvifdNrrvlHgrtafddetgeRhllray 258
                 + P +++ p+ +g k++ ++  la +++    g+   ++ +e e  +    +++ +++ + e  +r++++ Gd++ifdN+r+lH+r a  d++g+R ++++y
  MMETSP0890-20130614|7449_1  10 VVPHLEVKPQyRGTKCRGSHCiLAIRFSsksgGYappLPPKELET-FykakRRFAQLAHSSEMYIRLQLRRGDVAIFDNTRLLHARSAIADADGDRYVQGCY 110
                 567777788889999999999888888866552266434444444.447789999999999****************************************8 PP

>> PF01966.17  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.0   1.2e-06    0.0056       4     110 ..     179     258 ..     141     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTHHHHS..S..HHHHHH...HHHHHHHHHHHHHHHHHHCCS.HHHHHCCCCCCGS-TTTSHHHHHHSTTTS-HHH CS
  PF01966.17   4 HsleVaklarrlaedlgeeedrellrlaaLlHDiGkgpfgdffekkqeefekfkaHekvgaeilrevekrlgldledvaklirehhrswegkkypsglaerelslea 110
                 H l++a  a r +e+ +       + +aaL+HD+ +  ++              aH + +a +l  +  ++       +++ + hh+ ++g +y ++l++ ++++ea
  MMETSP0890-20130614|7449_1 179 HGLQTASRAFRANESDD-------IIVAALFHDVTEHIQPK-------------AHGEAAAALLAPYIDPS-------IHWLLTHHEVFQGLYYFHHLGADPNTREA 258
                 55555555555555555.......9*************995.............9************9999.......99999999999999985555555555554 PP

>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   7.3e-06     0.033       5      53 ..     161     209 ..     157     227 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.3e-06
   PF13328.1   5 AaklhaqqrkgtgepylshalevaailaelgldeetiiAalLhdvvedt 53 
                 A ++ ++   g+ +++ +h+l++a+   + +  +++i+Aal hdv e+ 
  MMETSP0890-20130614|7449_1 161 ALEAQRGLYLGQPVDLREHGLQTASRAFRANESDDIIVAALFHDVTEHI 209
                 55566677788899999**********9**9999************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.89
# Mc/sec: 880.46
//
Query:       MMETSP0890-20130614|7453_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-39  133.8   0.0    7.2e-39  133.2   0.0    1.2  1  PF01490.13 Transmembrane amino acid transporter protein
     0.0086   16.2   0.1      0.043   13.9   0.1    2.1  3  PF08862.5  Domain of unknown function DUF1829
  ------ inclusion threshold ------
      0.012   15.4   1.4      0.018   14.8   1.0    1.2  1  PF12935.2  Vesicle coat trafficking protein Sec16 N-terminus
      0.031   13.8   5.4        2.7    7.5   0.7    3.2  3  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
        1.4    7.0  16.7      0.073   11.2   7.3    2.0  2  PF00324.16 Amino acid permease


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   2.6e-42   7.2e-39     126     408 ..       5     402 ..       3     404 .. 0.91

  Alignments for each domain:
  == domain 1    score: 133.2 bits;  conditional E-value: 2.6e-42
  PF01490.13 126 vyfilisaliiipLslirnlsaLsylSllaavsslyy....ivilvlvvaelvklelqgvseeavkkasklkglflaigiivFAfeghavllpiqnelkdpskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkss......ilivivnvllvlalllsfplqlhplrevvenvlirk.................................................................................................................eavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekksleklilkkildlicivvglllvvyglavl 408
                 + ++++++ i + L+l+++++ ++  + la+ ++ y     ++++++  +++v +++ + + +a  + +++k+++++ +++v++feg + llp++n l +p+    m  v+++ + +vt++y+ vG + Y+++    +g i+  ++ ++      ++  + nv+ ++a++l+fp+ql+p +e +e+ ++ +                                                                                                                    +  s+    ++ ++r+++r+ +v+++ l A +vp l+++++l+Ga++++ ls+++Pal+++k+ ++++ ++e ++     d+++iv+g++  + g++++
  MMETSP0890-20130614|7453_1   5 YLLMVAIFPIYVALALLKSIKTIAPYAALANALI-YGsigvVIFVAFTEIHRVYQNPGDAQVQAQLSWFDIKKVPTFYSTVVYSFEGVCSLLPVENALANPRV--DMPTVTYVGMFIVTLTYTGVGAIAYAAWPTVRSGSITAEVSSRAtgtfwrTVSLTSNVATIIAVILTFPVQLFPSIELLEKTCHIQrppstissrrrrqsvsiddhqyhptlieeqgieladledthrraskdysepkfviigdddddttdedtldatrthhadafthahiqnghtnldeeksptknplrattgeesefDGASIFSDDDIDPQPWRRIFFRITVVFFVGLAAALVPDLGELIALIGALTGSALSLVFPALIDIKCPRPNRRKWELVV-----DIFVIVIGIIGGTTGTIQA 402
                 67899999***********************999.5565633333333444444544444444446778888*****************************99..699*************************************9999999877788899***************************988************************************************************************************************************998885555556667777789******************************************************98888875.....99*********99999986 PP

>> PF08862.5  Domain of unknown function DUF1829
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.9   5.1e+03      23      47 ..      53      76 ..      50      83 .. 0.70
   2 !   13.9   0.1   1.6e-05     0.043      39      83 ..     226     272 ..     217     276 .. 0.87
   3 ?   -3.6   0.0       4.6   1.2e+04      24      58 ..     348     383 ..     346     385 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.9
   PF08862.5 23 likvinnpdksaikkelfswlDvkk 47
                + +v +np   +++++ +sw D+kk
  MMETSP0890-20130614|7453_1 53 IHRVYQNPGDAQVQAQ-LSWFDIKK 76
                5567777777777765.58999963 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.6e-05
   PF08862.5  39 lfswlDvk..krerkseseliiilnDsekeiseeietaleeynikli 83 
                 l++++D+    ++++se++++ii +D +++++e+  +a++   ++++
  MMETSP0890-20130614|7453_1 226 LADLEDTHrrASKDYSEPKFVIIGDDDDDTTDEDTLDATRTHHADAF 272
                 67788999989999**********************99998877765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 4.6
   PF08862.5  24 ikvinnpdksaikkelfswlDvk.krerkseselii 58 
                 i +i  ++ sa++ +  ++ D+k  r ++++ el++
  MMETSP0890-20130614|7453_1 348 IALIGALTGSALSLVFPALIDIKcPRPNRRKWELVV 383
                 555666666666666777889988777777777665 PP

>> PF12935.2  Vesicle coat trafficking protein Sec16 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.0   6.5e-06     0.018     159     241 ..     213     294 ..     193     301 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.5e-06
   PF12935.2 159 sseeelaarwqaElsDeeeesieteddLaerwqaeLDdDDDlLlddelseeeaenedteensqntldddspfgtpeeaplvkP 241
                 +    l +  ++El D e+   ++++d  e ++    dDDD   d++++  ++   ++ + + + +++     ++e++p  +P
  MMETSP0890-20130614|7453_1 213 QYHPTLIEEQGIELADLEDTHRRASKDYSEPKFVIIGDDDDDTTDEDTL-DATRTHHADAFTHAHIQNGHTNLDEEKSPTKNP 294
                 4455688999**************************9999999999995.445555555555555554444444443444443 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.7     0.001       2.7      79     151 ..       4      71 ..       3      74 .. 0.77
   2 ?    5.0   0.3    0.0058        16      49     116 ..      92     174 ..      75     186 .. 0.73
   3 ?    1.4   0.0     0.073     2e+02      60      98 ..     306     358 ..     242     418 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.001
   PF13903.1  79 lvlillaavlallaslkksktlllltgvllllagilillavvlyvqkvqleikrnvqtwqselqnnvlaslgw 151
                 l l ++a++ + +a++  ++  + +   +l+ a i + ++vv++v ++  ei+r++q+  + +   v a+l+w
  MMETSP0890-20130614|7453_1   4 LYLLMVAIFPIYVALALLKSIKTIAPYAALANALIYGSIGVVIFVAFT--EIHRVYQNPGDAQ---VQAQLSW 71 
                 5577788888877776666666677777899*****************..5999998888776...5556655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0058
   PF13903.1  49 cfllevdvenes....atalldltrvvivflllglvlillaavlal.laslkksk..........tlllltgvllllagilil 116
                 c+ll+v++   +     ++      ++++++  g+++i+ aa+ ++ ++s+  +           t+ l++ v++++a+il++
  MMETSP0890-20130614|7453_1  92 CSLLPVENALANprvdMPTVTYVGMFIVTLTYTGVGAIAYAAWPTVrSGSITAEVssratgtfwrTVSLTSNVATIIAVILTF 174
                 555555555555555433334444577788889999*******9995666665557888899998888888999999999876 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.073
   PF13903.1  60 s............atalldltrvvivflllglvlil...laavlallaslkksk 98 
                 +            ++++++ +r ++vf++ gl+++l   l+ ++al+++l +s 
  MMETSP0890-20130614|7453_1 306 DgasifsdddidpQPWRRIFFRITVVFFV-GLAAALvpdLGELIALIGALTGSA 358
                 03333334466667777777777776655.333222111344444444444444 PP

>> PF00324.16  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.3   2.7e-05     0.073     157     278 ..      36     162 ..       2     176 .. 0.70
   2 ?   -2.8   0.3       0.5   1.4e+03     344     358 ..     329     343 ..     319     367 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.7e-05
  PF00324.16 157 fiivg.viillaggkpnkgrslgyngs.lkanfppgfa.keetgafagfisvfvivffaftGielvaiiagEvknPekaiPkailqaviritifYvlsllaigllvprndlglladsasa.........aspfv 278
                  +i g + ++++ + ++ +r ++++g+          + + + + ++ + ++ ++v+ +f G  ++  +   ++nP+ ++P ++   ++++t+ Y+++ ++  + +p+   g++++++s+         +s+  
  MMETSP0890-20130614|7453_1  36 ALIYGsIGVVIFVAFTEIHRVYQNPGDaQ-------VQaQLSWFDIKKVPTFYSTVVYSFEGVCSLLPVENALANPRVDMPTVTYVGMFIVTLTYTGVGAIAYAAWPTVRSGSITAEVSSratgtfwrtVSLTS 162
                 33333333333333333334455555521.......111234466889999****************************************************************9998864444333333332 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.5
  PF00324.16 344 llsmiisllalllas 358
                 ++ ++++l+a l+ +
  MMETSP0890-20130614|7453_1 329 TVVFFVGLAAALVPD 343
                 233333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.49s 00:00:01.16 Elapsed: 00:00:01.08
# Mc/sec: 947.45
//
Query:       MMETSP0890-20130614|7448_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-41  139.8   0.0    7.8e-41  139.4   0.0    1.2  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    5.5e-20   70.9   0.0      1e-19   70.1   0.0    1.5  1  PF03129.15 Anticodon binding domain
  ------ inclusion threshold ------
      0.013   15.9   0.0       0.03   14.7   0.0    1.6  1  PF13947.1  Wall-associated receptor kinase galacturonan-binding


Domain annotation for each model (and alignments):
>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.0   1.7e-44   7.8e-41       1     170 [.      37     312 ..      37     314 .. 0.92

  Alignments for each domain:
  == domain 1    score: 139.4 bits;  conditional E-value: 1.7e-44
                 HHHHHHHHHHHHHH.HCCT-EEEB--SEEEHHHHHH---TTTHHHHCEEBTT---SSE........................................................................................................EE-SSTHHHHCTTCCCCEECTCC.G-SEEEEE-EEEE---SSTT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHH.HHCT-GGEEEEEEETTTCHCCHSEEEEEEEEH CS
  PF00587.20   1 lknniiqfwrekfi.eeegflevdtPiltpeevlkasGhvdkfademykvkktgeeel........................................................................................................yLrPetaqgifllfkkllesnyr.klPlklaqigkvfRnEisprsGliRvReFtqaeieifvdpeksneeleellalikqfl.eklgieklrfrqstsgelahyakdtwdlevwt 170
                 lk+ni++ w++ ++  ++++  +d +i+ +  v++asGhv  f+d+m+ +kk g++ +                                                                                                        yLrPetaqgif +fk+   ++++ klP ++aqigk+fRnEi+pr++++R ReF+q+eie+f++pe+ +e ++ +++ + ++l + +g++k  ++    ++lahya+ + d+   +
  MMETSP0890-20130614|7448_1  37 LKKNIKDRWWRDMVqCRDDIFGLDSSIISSPLVWEASGHVGSFSDPMVIDKKSGKR-FradqlvcalakkengedlgmltmlesddcisdlsalakkyfkdktcvidestliyvseldggdimqsipspddqsrigdltppkpfnlmfetkvgamddssaiaYLRPETAQGIFTNFKNIASTARGfKLPCGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFISPEDWEEYYQTWINTCFDWLiSVCGLRKDLLHFEVHDKLAHYAQACTDITFDF 312
                 689***99999999789***********************************9994.33445567777778888899999**************************************************************************************************999977657*********************************************************7789**555555555556**********98776 PP

>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   2.3e-23     1e-19       1      92 [.     398     487 ..     398     489 .. 0.93

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 2.3e-23
                 SEEEEESSSSHHHHHHHHHHHHHHHHC----EEE--SSS----HHHHHHH----EEEEE-HHHHCTTEEEEEETTTTBEEEEETTTHHHHHH CS
  PF03129.15   1 qvvviplgekaeeledyakklaeeLreagirvelddrsesigkklrradllgipfavvvGekelekgtvtvrdrdtgeqervsleelveklk 92 
                 +++v+pl +++ el+++a +l ++ ++  +++ + d ++ +g+++rr d++g+pf+++v++++le++tvt+rdrd++ q+r++l+++ ++l 
  MMETSP0890-20130614|7448_1 398 KCAVLPLIKNKPELTELALSLHKKIQQR-YHCQY-DATGAVGRRYRRQDEIGTPFCITVDFQTLEDQTVTIRDRDSMLQIRIDLDQVTSFLD 487
                 79************************88.45555.59**************************************************99986 PP

>> PF13947.1  Wall-associated receptor kinase galacturonan-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.6e-06      0.03       6      44 ..     303     343 ..     298     387 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.6e-06
   PF13947.1   6 dkCGnvsipYPFgigk..gCalnpgfeltCnnttsppklll 44 
                 + C ++++++PFg ++  g a + +++ltC +++s + l  
  MMETSP0890-20130614|7448_1 303 QACTDITFDFPFGNQElqGIAARGSYDLTCHQSKSGKSLEY 343
                 68************986567779*********987776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.57s 00:00:01.20 Elapsed: 00:00:00.72
# Mc/sec: 1704.08
//
Query:       MMETSP0890-20130614|7455_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   40.5   0.0    2.7e-10   39.8   0.0    1.4  1  PF08123.8 Histone methylation protein DOT1
  ------ inclusion threshold ------
      0.036   14.5   0.0      0.053   13.9   0.0    1.3  1  PF12847.2 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   3.9e-14   2.7e-10      18     159 ..      69     212 ..      55     224 .. 0.67

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 3.9e-14
                 SGGG----B-HHHHHHHHHH..TT-----EEEEE------HHHHHHHH----EEE--B--HHHHHHHHHHHHHHHHHHHH----.---B---SS-STT-HHHHHHGGG-SEEEE--TT--HHHHHHHHHHHTT-----EEEESS- CS
   PF08123.8  18 fsnevYGEllpeflsevldk..vnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklfGkk.lakiefirksFvenekveeiieeadvilvNNfaFdaelnkqlkellqdlkegtkiislks 159
                 f + +YGE++pe   ++++   + lk++d+F DLGSGvG++ +qa le+g+++ + vE++++  +  ++  +   +  +   ++  ++++ +  +Fv  +++e  + + +  +  N  F ++  ++l+  ++ + +  +  +lk+
  MMETSP0890-20130614|7455_1  69 F-ASTYGEVTPEGARSIFTAlgIGLKEKDLFGDLGSGVGKLAVQAYLETGVQNVIAVELSTERDRRGRSSWSRCVRSGEAERIRgAEDFDSSAVQFVCSDIMEAPLDNVTHCFCSNLCFSHDAIRRLSGKIASMTSLHRAATLKP 212
                 4.458*************98224689*********************************98765555444333333322222221334555556666666666666666666666666666666666555555555555555555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.7e-06     0.053       7      74 ..     100     176 ..      93     220 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.7e-06
   PF12847.2   7 DlGcGtGslslelarlrpgakvvgvDpseeslelar............ena..ksldleeriellqgdakeelsllerfDav 74 
                 DlG+G+G l++ +  +++  +v++v++s e  ++ r            e++  ++   ++ ++++++d+       ++ D v
  MMETSP0890-20130614|7455_1 100 DLGSGVGKLAVQAYLETGVQNVIAVELSTERDRRGRsswsrcvrsgeaERIrgAEDFDSSAVQFVCSDI-----MEAPLDNV 176
                 9*********99999766666*******99999999777666666555222442333457888999999.....22223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.85
# Mc/sec: 704.81
//
Query:       MMETSP0890-20130614|7461_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   12.3   0.0       0.12   11.9   0.0    1.2  1  PF02146.12 Sir2 family
      0.093   12.0   0.2       0.11   11.7   0.1    1.1  1  PF02486.14 Replication initiation factor


Domain annotation for each model (and alignments):
>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.12      58      96 ..      80     118 ..      42     132 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
                 T..S---HHHHHHHHHHH---EEEEEE--SS-HHHH--- CS
  PF02146.12  58 kaeakpnaaHkflkklekkgkllrliTQNidnLekkaGs 96 
                    +++ a+  fl+kl ++g+ +  iTQN+d+ +++a  
  MMETSP0890-20130614|7461_1  80 IDAKEWEAVGLFLRKLYDEGEDMIFITQNLDKTKQNAAK 118
                 23567788899*********************9999865 PP

>> PF02486.14  Replication initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.7e-05      0.11      85     141 ..      63     119 ..      54     162 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
  PF02486.14  85 eshwvRlElelknkkavivvdvllkpeeylagiypalanlikrlstveklklktkkk 141
                  s+w+R+  +lk++ +vi  ++++  + +l ++y++ ++ i  +++ +k+k  + k+
  MMETSP0890-20130614|7461_1  63 QSEWNRFGSRLKDESQVIDAKEWEAVGLFLRKLYDEGEDMIFITQNLDKTKQNAAKE 119
                 688**********************99999999999888887544444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|7457_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-65  221.7   0.1    1.8e-65  221.1   0.0    1.2  1  PF03639.8 Glycosyl hydrolase family 81


Domain annotation for each model (and alignments):
>> PF03639.8  Glycosyl hydrolase family 81
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.1   0.0   1.3e-69   1.8e-65     351     689 ..      41     418 ..      12     423 .. 0.86

  Alignments for each domain:
  == domain 1    score: 221.1 bits;  conditional E-value: 1.3e-69
   PF03639.8 351 eiiealakdvnlsdseae.....stldssYfsgKiiakyarillvaeeilqdevltkilleklkiaeerllgneqvypllYDtkwkGliskg.lGskssqaDfGntyYnDHHfHygYfvyaiAvialvDpsWlennrdqvnsLlrDy...........................anpsesdsyfarlRnFDlFkgHsWAaGlfesgdGkneEstsEdvnalYaakLlGlvigdkklveranlvltilknalksyfyvkednavqPkeiig.nkvsGilfsnkiDsatyFgaeeeykhgihllPitp.vssvlrsetfvkqev....naklepiidsveegWkGilyanealyDkkgayek...fkastfddansldnglsk 689
                  i + l +dv +++++a            Yf gK +a+ ar++lva+e+   e+     +++ +  ++r+l + +   + YD++w+Glis       ++  +fGn++Y DHHfHygY+ ya+A++  + p W ++  + +  L+ D+                             ++  d  f++ R  D++ gHsWA+Gl+  + Gk +Es+sE+  a++a+++lG + +d kl + + l+l+ +  + + y+++    +++ +++   n+++G +       at+Fga++ey hgi+ lP++p + ++l+ + +v +++    na   p   +v + W+G+  an a+ D++ a +    + +++fdd+ s  n+l +
  MMETSP0890-20130614|7457_1  41 IISAQLRRDVRILKAHASflaknGAYGKLYFEGKELARLARLILVADEVEDPEAKNWAIVYLER-RFDRILRSDD--NFAYDPTWGGLISLPvTEHGDPFSNFGNALYSDHHFHYGYYCYAAAILCSIKPAWCRRWNRRIRDLVHDFanlpaspkskqfyqtlfssdkeildnkHSVAGADARFPQARHKDWYDGHSWATGLVSYATGKSQESSSEASHAYFAVAVLGEALNDIKLRDWGRLLLATEVRSTRYYWHIPLSSSIYDSKFSMyNRITGSVAGSATVAATWFGANPEYVHGIQTLPVVPgLTDILFDPDYVCDQLpileNAFARPAPVNVADSWRGVALANVAIVDQHAAWHRaleLDEKKFDDGASKANLLHW 418
                 444456677777776663111112234579******************9877776666666555.5566655554..599**********98667889*************************************99*********************************9987678899****************************************************************************************999**********************************9678999******9986333244455556799********************9852226679***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.82
# Mc/sec: 1449.50
//
Query:       MMETSP0890-20130614|7459_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.002   17.6   0.0      0.058   13.0   0.0    2.9  3  PF09759.4  Spinocerebellar ataxia type 10 protein domain
     0.0096   16.0   5.5       0.66   10.1   0.4    3.5  3  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
      0.071   13.0   0.1        0.2   11.6   0.0    1.7  1  PF12898.2  Stc1 domain
      0.091   11.8   0.7       0.19   10.8   0.5    1.5  1  PF13248.1  zinc-ribbon domain
       0.11   11.6   2.4       0.12   11.5   0.6    1.8  2  PF08271.7  TFIIB zinc-binding
       0.51   10.1  14.7         15    5.4   0.0    6.1  6  PF00514.18 Armadillo/beta-catenin-like repeat
        2.4    8.7   6.4         50    4.5   0.0    4.1  3  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.25   4.9e+02      10      27 ..       6      23 ..       2      33 .. 0.73
   2 !   13.0   0.0     3e-05     0.058       3      88 ..      54     139 ..      52     151 .. 0.85
   3 ?   -0.9   0.0      0.61   1.2e+03      10      43 ..     157     189 ..     148     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.25
   PF09759.4 10 ianltyknkevqdkvrel 27
                ++nl++ + ++qd + +l
  MMETSP0890-20130614|7459_1  6 MSNLVWAHIKNQDRCTNL 23
                789999999999998765 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 3e-05
   PF09759.4   3 krelvrlianltyknkevqdkvreldg.laliLsntriDdenPflkEwailairnLlennkenqeliaeLeakgvaesdllkeagle 88 
                 ++  v l+an+++ +  +   v    g l l+L  t+ D +   ++E a+ +i  L +  + ++ +i   ++kg+    +l  a+ +
  MMETSP0890-20130614|7459_1  54 RVCAVDLLANILHYHDVNRHYVEVIPGaLGLLLGLTHPDHQ-TSMREAALRCIVSLSATDRGARRIIDTYDEKGISACLALITAASD 139
                 566799****************999999********99876.67*************************999999666555555544 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.61
   PF09759.4  10 ianltyknkevqdkvreldglaliLsntriDden 43 
                 +anl+   +e+  ++   +gl+++ s++ ++d++
  MMETSP0890-20130614|7459_1 157 LANLC-AFTEARLQIQTVGGLEILVSAAACEDKE 189
                 66666.4567778899999999999999888876 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0067        13      13      59 ..      49     109 ..      43     142 .. 0.62
   2 !   10.1   0.4   0.00034      0.66      17      64 ..     150     211 ..     127     221 .. 0.68
   3 ?    0.1   0.1      0.46     9e+02      33      40 ..     348     355 ..     241     412 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0067
   PF13646.1  13 dpe.vraaaieaLgqlgse........ealpaLlelL.....kdsdpevRraAaeaLgklg 59 
                 d++ +r  a+++L+++ +         e++p  l lL      d   ++R+aA++++  l+
  MMETSP0890-20130614|7459_1  49 DWYaTRVCAVDLLANILHYhdvnrhyvEVIPGALGLLlglthPDHQTSMREAALRCIVSLS 109
                 554378889999995544334444455666666666666623355689******9998884 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00034
   PF13646.1  17 raaaieaLg..........qlgseealpaLlelLkdsdpevRraAaeaLgkl....gdpeal 64 
                 r+    aL+          q+ +   l++L++++  +d e+R +A  aL +l    g+pe +
  MMETSP0890-20130614|7459_1 150 RRYGTTALAnlcaftearlQIQTVGGLEILVSAAACEDKETRNSATLALEALqekiGQPERI 211
                 44444555533334433334444455***********************9763333667755 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.46
   PF13646.1  33 lpaLlelL 40 
                 +++L++ +
  MMETSP0890-20130614|7459_1 348 VQLLVSIA 355
                 33333333 PP

>> PF12898.2  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001       0.2      22      64 ..     414     459 ..     408     473 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
   PF12898.2  22 lrkallaa...kvaasqklikCreCtgeqereleCskCkktkplee 64 
                 +++++la+   +  a ++li C++C+ +++  l C  C+++  ++ 
  MMETSP0890-20130614|7459_1 414 YEHRELANillRELAPHNLILCTNCSTKNRGGLVCVFCGHSLRIDD 459
                 444444544555566699*********************9988875 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   9.6e-05      0.19       5      26 .]     435     455 ..     432     455 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.6e-05
   PF13248.1   5 CPnCGavlevdakFCpnCGapL 26 
                 C nC+++   +  +C +CG+ L
  MMETSP0890-20130614|7459_1 435 CTNCSTK-NRGGLVCVFCGHSL 455
                 ******9.6677*******986 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   4.1e+03      32      42 ..     275     285 ..     273     286 .. 0.81
   2 ?   11.5   0.6   6.1e-05      0.12       3      39 ..     435     465 ..     433     468 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.1
                 TT-S------X CS
   PF08271.7  32 esidpgpewra 42 
                 es ++g+ew +
  MMETSP0890-20130614|7459_1 275 ESLEEGSEWLE 285
                 57889****87 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 6.1e-05
                 -SSS--EEHHB-S----BB-SSS-B-EE-TT-S---- CS
   PF08271.7   3 CPnCgstelvfDaerGelvCtdCGlVledesidpgpe 39 
                 C nC +++      rG lvC +CG  l  +++d++ +
  MMETSP0890-20130614|7459_1 435 CTNCSTKN------RGGLVCVFCGHSLRIDDNDKEHT 465
                 88999875......*******************9875 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.5     0.085   1.7e+02      32      40 ..       2      10 ..       1      11 [. 0.89
   2 ?    4.1   0.0      0.02        40      11      41 .]      79     110 ..      68     110 .. 0.88
   3 ?    1.5   0.1      0.13   2.5e+02      28      41 .]     149     162 ..     147     162 .. 0.83
   4 ?    5.4   0.0    0.0077        15       7      36 ..     169     198 ..     164     199 .. 0.87
   5 ?    1.6   0.0      0.12   2.4e+02      11      38 ..     295     327 ..     289     330 .. 0.78
   6 ?   -1.1   0.0      0.86   1.7e+03       4      35 ..     338     372 ..     335     373 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.085
                HHHHHHHHH CS
  PF00514.18 32 AawALsNLa 40
                A+wA+sNL 
  MMETSP0890-20130614|7459_1  2 ALWAMSNLV 10
                9******96 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.02
                 CHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
  PF00514.18  11 aGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  Ga+  L+ L + +  ++++e+A++++  L+a
  MMETSP0890-20130614|7459_1  79 PGALGLLLGLTHpDHQTSMREAALRCIVSLSA 110
                 799999999999***************99985 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHT CS
  PF00514.18  28 vqeeAawALsNLaa 41 
                 ++++ ++AL NL+a
  MMETSP0890-20130614|7459_1 149 LRRYGTTALANLCA 162
                 6777899******6 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0077
                 HHHHCHHHHHHHHHHC-SSHHHHHHHHHHH CS
  PF00514.18   7 avieaGavppLvqLLksgdeevqeeAawAL 36 
                 ++  +G++++Lv+   ++d+e++  A+ AL
  MMETSP0890-20130614|7459_1 169 QIQTVGGLEILVSAAACEDKETRNSATLAL 198
                 56678******************9999888 PP

  == domain 5    score: 1.6 bits;  conditional E-value: 0.12
                 CHHHHHHHHHHC.....-SSHHHHHHHHHHHHH CS
  PF00514.18  11 aGavppLvqLLk.....sgdeevqeeAawALsN 38 
                 +G++++L++ L       + ++++++ + AL N
  MMETSP0890-20130614|7459_1 295 EGGIEALLANLLqysdiQTYPDILTVTLEALYN 327
                 677777777776698888888999888888888 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 0.86
                 HHHHHHHCHHHHHHHHHHC...-SSHHHHHHHHHH CS
  PF00514.18   4 nkqavieaGavppLvqLLk...sgdeevqeeAawA 35 
                  +q + ++ +v+ Lv+  +    ++++++e A+ A
  MMETSP0890-20130614|7459_1 338 LRQRISNVRGVQLLVSIARnasITSPKILEIALKA 372
                 67777788899999998886666677777766655 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.025        50      21      52 ..      73     105 ..      52     108 .. 0.79
   2 ?    2.9   0.5     0.084   1.6e+02       2      55 .]     148     201 ..     147     201 .. 0.64
   3 ?    1.4   0.1      0.23   4.5e+02       5      42 ..     367     404 ..     363     407 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.025
   PF13513.1  21 llepavpellpaLlelLeddddeV..ReaAawAL 52 
                 +  +++p +l +Ll +L+++d ++  ReaA++++
  MMETSP0890-20130614|7459_1  73 HYVEVIPGALGLLL-GLTHPDHQTsmREAALRCI 105
                 55667888888888.99999996666*****997 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.084
   PF13513.1   2 rvRraAawaLGr.laggeprllepavpellpaLlelLeddddeVReaAawALgrl 55 
                 r+Rr    aL++  a+ e+rl + +    l+ L+ + + +d+e+R +A +AL++l
  MMETSP0890-20130614|7459_1 148 RLRRYGTTALANlCAFTEARL-QIQTVGGLEILVSAAACEDKETRNSATLALEAL 201
                 677777778877444444444.334444556666666667779********9876 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.23
   PF13513.1   5 raAawaLGr.laggeprllepavpellpaLlelLedddd 42 
                 + A++aL   +a g +   ++++   l++Ll+  e+d++
  MMETSP0890-20130614|7459_1 367 EIALKAL-IpIATGYAPVCRTLLAVSLDFLLDIAENDSE 404
                 6788899.88889999999999999******99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.99
# Mc/sec: 1188.50
//
Query:       MMETSP0890-20130614|7462_1  [L=869]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   40.5  25.4    0.00077   18.9   0.1    5.8  6  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
    9.7e-09   35.2  13.4        1.3    9.1   0.0    8.2  9  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    2.1e-07   30.4   1.0    7.9e-07   28.5   0.0    2.3  2  PF12937.2  F-box-like


Domain annotation for each model (and alignments):
>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.51   2.3e+03      20      26 ..     462     468 ..     461     472 .. 0.73
   2 !    9.0   1.0   0.00021      0.97       1      27 [.     491     519 ..     491     520 .. 0.88
   3 !   18.9   0.1   1.7e-07   0.00077       1      26 [.     537     574 ..     537     581 .. 0.92
   4 !   16.0   0.0   1.3e-06    0.0061       3      24 ..     668     689 ..     667     693 .. 0.92
   5 !   11.0   0.9   5.1e-05      0.23       1      25 [.     733     757 ..     733     762 .. 0.91
   6 ?   -2.4   0.0      0.81   3.7e+03      16      24 ..     812     821 ..     809     822 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.51
                 EEEE--- CS
   PF13540.1  20 VlcWGsN 26 
                 V++WG+ 
  MMETSP0890-20130614|7462_1 462 VFAWGNS 468
                 89***84 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00021
                 --EEE-----EEEE-.---EEEE-..--T CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWG..sNs 27 
                 Vvs+ + +y t+aLt++G V+ WG  +Ns
  MMETSP0890-20130614|7462_1 491 VVSLVCANYSTLALTDNGFVYHWGryWNS 519
                 89999*******************44465 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 1.7e-07
                 --EEE...-----.........EEEE-.---EEEE--- CS
   PF13540.1   1 Vvsvs...aGgyH.........tcaLtsdGaVlcWGsN 26 
                 V+s+s   +G++H         +ca+ts G +++WG+N
  MMETSP0890-20130614|7462_1 537 VISISvtpCGYRHtrlrtpgfsACAITSYGNLYTWGDN 574
                 788888899***************************** PP

  == domain 4    score: 16.0 bits;  conditional E-value: 1.3e-06
                 EEE-----EEEE-.---EEEE- CS
   PF13540.1   3 svsaGgyHtcaLtsdGaVlcWG 24 
                 ++  G++H caL   G+++++G
  MMETSP0890-20130614|7462_1 668 QLVGGSFHCCALSKTGELFTFG 689
                 7889*****************9 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 5.1e-05
                 --EEE-----EEEE-.---EEEE-- CS
   PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGs 25 
                 +++v+a  y t+aL  d   +cWG+
  MMETSP0890-20130614|7462_1 733 ITHVAASTYSTVALSIDSNAYCWGD 757
                 689*********************8 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 0.81
                 ..---EEEE- CS
   PF13540.1  16 s.dGaVlcWG 24 
                 + dG+V+ WG
  MMETSP0890-20130614|7462_1 812 TiDGRVFLWG 821
                 449****999 PP

>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0051        23       4      51 .]     462     504 ..     461     504 .. 0.75
   2 !    7.6   0.2   0.00087         4      20      48 ..     521     550 ..     507     552 .. 0.85
   3 !    9.1   0.0   0.00029       1.3       2      44 ..     566     620 ..     565     626 .. 0.76
   4 ?    0.3   0.0      0.16   7.4e+02      29      51 .]     657     679 ..     653     679 .. 0.86
   5 ?   -3.9   0.0         3   1.4e+04       2       8 ..     683     689 ..     683     690 .. 0.92
   6 !    4.4   0.0    0.0084        38      28      51 .]     723     746 ..     698     746 .. 0.78
   7 !    6.6   0.0    0.0018       8.3       4      17 ..     752     774 ..     749     804 .. 0.71
   8 ?    1.4   0.8     0.072   3.3e+02       1       8 [.     814     821 ..     814     827 .. 0.94
   9 ?   -4.2   0.0         3   1.4e+04      35      48 ..     849     862 ..     846     864 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0051
                 EEEE---------.--------S-EE-GGG------EEE-----EEEE CS
  PF00415.13   4 VysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                 V++WG++ +  L      ++   P+++++     vv+ +c ++ tlal
  MMETSP0890-20130614|7462_1 462 VFAWGNSGRSGLN-----KDYQSPRLLPWSLCHAVVSLVCANYSTLAL 504
                 9999999877777.....556666666666666799999999999987 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00087
                 ------S-EE-GGG------EEE.-----E CS
  PF00415.13  20 seenvlvPvkveglsgvrvvqva.cGgsHt 48 
                 +e +v +P+k+  l++v  ++v+ cG++Ht
  MMETSP0890-20130614|7462_1 521 TEIDVPKPKKIDELRDVISISVTpCGYRHT 550
                 6678999*********8888888******9 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00029
                 TEEEEE-....--------.--------S-EE-GGG--.........----EEE-- CS
  PF00415.13   2 GrVysWG....rndyGqLGkggseenvlvPvkveglsg.........vrvvqvacG 44 
                 G++y+WG    + +yG L  + +e+    P++v +            +rv++++ G
  MMETSP0890-20130614|7462_1 566 GNLYTWGdnyqCANYGHLF-HMDERCIERPKRVIFYDEilkffrernYRVIHATLG 620
                 99*****888888899888.999999999999766666555566677777777666 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.16
                 E-GGG------EEE-----EEEE CS
  PF00415.13  29 kveglsgvrvvqvacGgsHtlal 51 
                 +v  l + +  q + G++H++al
  MMETSP0890-20130614|7462_1 657 RVRALDNLELRQLVGGSFHCCAL 679
                 67788888899999*******97 PP

  == domain 5    score: -3.9 bits;  conditional E-value: 3
                 TEEEEE- CS
  PF00415.13   2 GrVysWG 8  
                 G+++++G
  MMETSP0890-20130614|7462_1 683 GELFTFG 689
                 89****9 PP

  == domain 6    score: 4.4 bits;  conditional E-value: 0.0084
                 EE-GGG------EEE-----EEEE CS
  PF00415.13  28 vkveglsgvrvvqvacGgsHtlal 51 
                 ++v+  +g ++++va+  + t+al
  MMETSP0890-20130614|7462_1 723 SRVNIANGDPITHVAASTYSTVAL 746
                 67999999**************97 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.0018
                 EEEE---------.......... CS
  PF00415.13   4 VysWGrndyGqLG.........k 17 
                  y+WG +d   LG         +
  MMETSP0890-20130614|7462_1 752 AYCWGDSDGNALGdhvptnddeN 774
                 6************8665443330 PP

  == domain 8    score: 1.4 bits;  conditional E-value: 0.072
                 TTEEEEE- CS
  PF00415.13   1 dGrVysWG 8  
                 dGrV+ WG
  MMETSP0890-20130614|7462_1 814 DGRVFLWG 821
                 9******* PP

  == domain 9    score: -4.2 bits;  conditional E-value: 3
                 -----EEE-----E CS
  PF00415.13  35 gvrvvqvacGgsHt 48 
                 g+ +++++ G+ H 
  MMETSP0890-20130614|7462_1 849 GYQASAISLGHEHG 862
                 56678999999995 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.7e-10   7.9e-07       8      42 ..     423     457 ..     421     461 .. 0.85
   2 ?   -0.6   0.1      0.23     1e+03      20      37 ..     486     505 ..     476     512 .. 0.70

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.7e-10
                 HHHHHHTTS-HHHHHH.H----HHHHHHHHT-HHHH CS
   PF12937.2   8 iLlqIFsyLppsdLlr.lalVCrrWrrvaldtlLWr 42 
                  LlqIF++L  ++ +  +a+VCrrWr+va+d+  Wr
  MMETSP0890-20130614|7462_1 423 ALLQIFRFLGMTEGCTtAAAVCRRWRAVANDP-TWR 457
                 59*******877766659***********998.776 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.23
                 HHHH.H.----HHHHHHHHT CS
   PF12937.2  20 dLlr.l.alVCrrWrrvald 37 
                 +L+  + +lVC    ++al+
  MMETSP0890-20130614|7462_1 486 SLCHaVvSLVCANYSTLALT 505
                 46665459***999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.22u 0.35s 00:00:01.56 Elapsed: 00:00:00.83
# Mc/sec: 2508.96
//
Query:       MMETSP0890-20130614|7466_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   56.6   0.1    1.4e-15   56.6   0.1    2.5  3  PF00226.26 DnaJ domain
    2.3e-06   27.0   6.5    2.9e-05   23.5   0.5    3.4  4  PF13414.1  TPR repeat
    1.8e-05   24.1   1.1       0.18   11.6   0.5    3.4  2  PF07719.12 Tetratricopeptide repeat
    6.3e-05   23.4   3.2    6.3e-05   23.4   2.2    3.6  5  PF13432.1  Tetratricopeptide repeat
    0.00025   20.5   6.4       0.28   10.7   0.4    3.5  3  PF14392.1  Zinc knuckle
    0.00027   20.5  19.6     0.0004   20.0   1.8    3.3  4  PF00098.18 Zinc knuckle
     0.0019   18.1   0.2       0.11   12.6   0.0    3.4  3  PF13431.1  Tetratricopeptide repeat
     0.0024   17.3   0.2       0.51    9.9   0.1    3.0  2  PF00515.23 Tetratricopeptide repeat
     0.0049   16.2   7.3       0.38   10.1   1.9    2.4  2  PF13696.1  Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.3     2e+03      24      37 ..     155     168 ..     153     181 .. 0.79
   2 !   56.6   0.1   9.4e-19   1.4e-15       2      54 ..     260     314 ..     259     317 .. 0.97
   3 ?   -3.0   0.0       3.7   5.6e+03      44      59 ..     341     356 ..     334     359 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.3
                 HHHHT-TTT--SCC CS
  PF00226.26  24 lalkyHPDknkdde 37 
                 + +++H Dk +dde
  MMETSP0890-20130614|7466_1 155 KRKRLHSDKDDDDE 168
                 56899999988887 PP

  == domain 2    score: 56.6 bits;  conditional E-value: 9.4e-19
                 HHHHTT--T..T--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHH CS
  PF00226.26   2 yYeiLgvpk..dasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevL 54 
                 +Y +Lg+p+   as ++IkkaY++ +l++HPDk++++ eea+e+f ei  Aye L
  MMETSP0890-20130614|7466_1 260 LYRVLGLPErrLASPADIKKAYHRRSLEFHPDKHPNNREEAHERFLEIRSAYELL 314
                 6********999*****************************************98 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHTSHHH CS
  PF00226.26  44 fkeineAyevLsdpek 59 
                  + ++e  ++L+d+ k
  MMETSP0890-20130614|7466_1 341 AQALQERVKTLTDKVK 356
                 5667777788888877 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   1.3e-05      0.02      22      69 .]      15      64 ..      12      64 .. 0.81
   2 !   23.5   0.5   1.9e-08   2.9e-05      20      68 ..      50      97 ..      31      98 .. 0.88
   3 ?   -3.0   0.0       3.6   5.4e+03      40      49 ..     173     182 ..     166     192 .. 0.73
   4 ?   -1.7   0.1       1.4   2.1e+03      35      57 ..     209     231 ..     206     235 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
   PF13414.1 22 AieayekAleldpnnaelyynlAlaylkl.gkdye.eAledyekAleldP 69
                 i+a+++ ++  p n ++++ lA a+l+l  ++y  eAle+++ A+el+P
  MMETSP0890-20130614|7466_1 15 TIRALRHEIDSIPRNHQAFALLAGALLRLdAERYAdEALEHAQTAIELAP 64
                577888888889**********999999832343349***********98 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.9e-08
   PF13414.1 20 deAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68
                deA+e+ + A+el p+ a+ +++ + a+l +g +  +A++ + +A +ld
  MMETSP0890-20130614|7466_1 50 DEALEHAQTAIELAPKFAWGHFRKGSALLAMG-HVAKAATSLGLASSLD 97
                8*******************************.8999999988887776 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.6
   PF13414.1  40 yynlAlaylk 49 
                 y+ +A++y  
  MMETSP0890-20130614|7466_1 173 YNPRAHCYVC 182
                 6668999875 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.4
   PF13414.1  35 nnaelyynlAlaylklgkdyeeA 57 
                 +++ l ++lA a  +  ++ ++A
  MMETSP0890-20130614|7466_1 209 ECPLLTAALANAAAEEKNKKRKA 231
                 56777788888877765554554 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.5   0.00012      0.18      13      33 ..      44      65 ..      39      66 .. 0.85
   2 !    8.9   0.0   0.00087       1.3       3      33 ..      69      99 ..      67     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
                HTT-H.HHHHHHHHHHHHH-TT CS
  PF07719.12 13 klgdy.eeAleafekAleldPn 33
                 + +y +eAle+ + A+el+P+
  MMETSP0890-20130614|7466_1 44 DAERYaDEALEHAQTAIELAPK 65
                667888***************7 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00087
                HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPn 33
                ++++ G a++++g+ ++A+  +  A +ld +
  MMETSP0890-20130614|7466_1 69 GHFRKGSALLAMGHVAKAATSLGLASSLDSE 99
                79*****************999888887765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.8      0.15   2.2e+02      23      50 ..      18      51 ..      15      52 .. 0.81
   2 !   23.4   2.2   4.2e-08   6.3e-05       4      56 ..      39      93 ..      36     101 .. 0.88
   3 ?   -2.7   0.2       6.4   9.7e+03      15      56 ..     132     140 ..     130     147 .. 0.49
   4 ?   -3.8   0.1         9   1.4e+04       3       9 ..     217     223 ..     214     228 .. 0.52
   5 ?   -1.7   0.2       3.1   4.7e+03      48      53 ..     337     343 ..     328     348 .. 0.52

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.15
   PF13432.1 23 alala....Peaaeallllaeallrl..grldeA 50
                al+ +    P++ +a+ lla allrl   r++++
  MMETSP0890-20130614|7466_1 18 ALRHEidsiPRNHQAFALLAGALLRLdaERYADE 51
                6666677889**************9977777665 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 4.2e-08
   PF13432.1  4 ArallraGd.ydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.allra 56
                A+++l+a +  deAl++ ++a++laP+ a+ +++ + all++g++++Aa  l  a
  MMETSP0890-20130614|7466_1 39 ALLRLDAERyADEALEHAQTAIELAPKFAWGHFRKGSALLAMGHVAKAAtSLGLA 93
                888999999889*************************************776555 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 6.4
   PF13432.1  15 eAlaaleaalalaPeaaeallllaeallrlgrldeAaallra 56 
                 eA++                                 +l++a
  MMETSP0890-20130614|7466_1 132 EAAE---------------------------------QLIQA 140
                 3333.................................44444 PP

  == domain 4    score: -3.8 bits;  conditional E-value: 9
   PF13432.1   3 lArallr 9  
                 lA+a+ +
  MMETSP0890-20130614|7466_1 217 LANAAAE 223
                 4444444 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 3.1
   PF13432.1  48 deAa.al 53 
                 d+Aa ++
  MMETSP0890-20130614|7466_1 337 DAAAaQA 343
                 3333343 PP

>> PF14392.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.23   3.6e+02       4      22 ..     118     138 ..     116     142 .. 0.73
   2 !   10.7   0.4   0.00018      0.28      32      49 .]     177     194 ..     174     194 .. 0.90
   3 !    9.2   0.8   0.00055      0.83      34      49 .]     197     212 ..     195     212 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.23
   PF14392.1   4 skPLrrkinvkikag..eetv 22 
                  +PL+++++++i+a+  e+++
  MMETSP0890-20130614|7466_1 118 LDPLDAFVATEINAEaaEQLI 138
                 58**********976435555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00018
   PF14392.1  32 nfCfiCgrlgHsdkeCpk 49 
                  +C+ C   gH++++Cp+
  MMETSP0890-20130614|7466_1 177 AHCYVCKQWGHTKRDCPL 194
                 68**************96 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00055
   PF14392.1  34 CfiCgrlgHsdkeCpk 49 
                 C +C  +gH++ eCp+
  MMETSP0890-20130614|7466_1 197 CQYCFEIGHKKSECPL 212
                 **************96 PP

>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       7.8   1.2e+04      10      14 ..      69      73 ..      69      73 .. 0.83
   2 ?    0.1   0.1      0.52   7.9e+02       9      14 ..      80      85 ..      79      86 .. 0.87
   3 !   20.0   1.8   2.7e-07    0.0004       2      17 ..     178     193 ..     177     194 .. 0.95
   4 !   11.8   0.9    0.0001      0.16       2      17 ..     196     211 ..     195     212 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 7.8
                ----- CS
  PF00098.18 10 GHlar 14
                GH+ +
  MMETSP0890-20130614|7466_1 69 GHFRK 73
                9*976 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.52
                ------ CS
  PF00098.18  9 eGHlar 14
                +GH+a+
  MMETSP0890-20130614|7466_1 80 MGHVAK 85
                8***98 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 2.7e-07
                 --S------------S CS
  PF00098.18   2 kCynCGkeGHlardCp 17 
                  Cy C++ GH +rdCp
  MMETSP0890-20130614|7466_1 178 HCYVCKQWGHTKRDCP 193
                 5**************9 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 0.0001
                 --S------------S CS
  PF00098.18   2 kCynCGkeGHlardCp 17 
                 kC +C + GH +++Cp
  MMETSP0890-20130614|7466_1 196 KCQYCFEIGHKKSECP 211
                 8**************9 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3     2e+03      10      25 ..      27      42 ..      17      53 .. 0.71
   2 !   12.6   0.0   7.3e-05      0.11       3      32 ..      57      86 ..      55      88 .. 0.92
   3 ?    0.6   0.0      0.49   7.4e+02       2      14 ..     282     294 ..     281     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.3
   PF13431.1 10 PnnadaynnLAellln 25
                P n++a+  LA +ll+
  MMETSP0890-20130614|7466_1 27 PRNHQAFALLAGALLR 42
                8999999999966664 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 7.3e-05
   PF13431.1  3 ekaleldPnnadaynnLAelllnnGdleeA 32
                + a+el+P+ a+ +++++ +ll+ G  ++A
  MMETSP0890-20130614|7466_1 57 QTAIELAPKFAWGHFRKGSALLAMGHVAKA 86
                78***********************98887 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.49
   PF13431.1   2 yekaleldPnnad 14 
                  +++le +P+ ++
  MMETSP0890-20130614|7466_1 282 HRRSLEFHPDKHP 294
                 689******9765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00034      0.51      18      34 .]      50      66 ..      50      66 .. 0.95
   2 ?    4.3   0.0      0.02        30       1      23 [.      67      89 ..      67     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00034
                HHHHHHHHHHHHHHTTH CS
  PF00515.23 18 deAleyyekALelnPnn 34
                deAle+ + A+el P++
  MMETSP0890-20130614|7466_1 50 DEALEHAQTAIELAPKF 66
                8**************96 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHTT-HHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAley 23
                a  ++++G a+l +g   +A   
  MMETSP0890-20130614|7466_1 67 AWGHFRKGSALLAMGHVAKAATS 89
                6789***********99999765 PP

>> PF13696.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   1.9   0.00025      0.38       8      27 ..     176     195 ..     174     197 .. 0.88
   2 !    8.3   0.3   0.00092       1.4      11      26 ..     197     212 ..     195     218 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00025
   PF13696.1   8 kYlCHlCfkkGHyIsDCPqa 27 
                 +  C +C + GH  +DCP a
  MMETSP0890-20130614|7466_1 176 RAHCYVCKQWGHTKRDCPLA 195
                 567***************97 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00092
   PF13696.1  11 CHlCfkkGHyIsDCPq 26 
                 C  Cf+ GH  s CP 
  MMETSP0890-20130614|7466_1 197 CQYCFEIGHKKSECPL 212
                 999************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1108  (0.0810415); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.75
# Mc/sec: 1159.84
//
Query:       MMETSP0890-20130614|7464_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      478  (0.034962); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:01.17
# Mc/sec: 1034.33
//
Query:       MMETSP0890-20130614|7468_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-40  136.1   0.0    1.2e-10   40.5   0.0    4.8  5  PF13475.1  Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.032   12.5   0.0      0.047   12.0   0.0    1.3  1  PF08596.5  Lethal giant larvae(Lgl) like, C-terminal
      0.095   12.1   0.1          2    7.9   0.0    2.4  2  PF02831.10 gpW


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.5e-08   6.9e-05      17      49 .]       2      34 ..       2      34 .. 0.93
   2 !   40.5   0.0   2.6e-14   1.2e-10       1      47 [.      11      57 ..      11      59 .. 0.96
   3 !   21.8   0.0   1.9e-08   8.8e-05       1      35 [.      87     121 ..      87     129 .. 0.96
   4 !   29.8   0.0   6.1e-11   2.8e-07      14      49 .]     131     166 ..     125     166 .. 0.94
   5 !   38.0   0.0   1.6e-13   7.4e-10       1      33 [.     168     200 ..     168     206 .. 0.97

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.5e-08
   PF13475.1 17 kylseeLknDkeivlkAvkqngsalsyaseeLr 49
                +y+ +e+k+D+ +vl A+ ++g al ya +e++
  MMETSP0890-20130614|7468_1  2 QYAADEFKSDRKVVLTAISNDGLALQYAADEFK 34
                7999***********************999986 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 2.6e-14
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyasee 47
                Dr +vl a++++g al+y+ +e+k+D+eiv  Av +n  a++ya +e
  MMETSP0890-20130614|7468_1 11 DRKVVLTAISNDGLALQYAADEFKSDREIVVVAVDNNNRAIEYAADE 57
                9******************************************9877 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 1.9e-08
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvk 35 
                 Dr++vl avk  g+++  + +e+k++ ei+l+Av 
  MMETSP0890-20130614|7468_1  87 DRDFVLDAVKDVGFVIGMAAPEFKSNLEIALAAVA 121
                 9********************************95 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 6.1e-11
   PF13475.1  14 salkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                  +l+++ +eLk+D+++v  Av+++g al++a +eL+
  MMETSP0890-20130614|7468_1 131 RSLYFVADELKSDRQVVFCAVQNDGRALEFATPELK 166
                 5899******************************97 PP

  == domain 5    score: 38.0 bits;  conditional E-value: 1.6e-13
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkA 33 
                 DrE+vleav++ng al+y+ +eLk+D ei+l+A
  MMETSP0890-20130614|7468_1 168 DREVVLEAVTQNGTALQYAADELKSDSEILLAA 200
                 9******************************98 PP

>> PF08596.5  Lethal giant larvae(Lgl) like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     1e-05     0.047     250     308 ..     122     181 ..      97     225 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1e-05
                 E---S-EEE---EEEEEE-..EEEEEEEEEEE----EEEEETTT--EEEEE--SS---HHH CS
   PF08596.5 250 ksfedellcsaisvvktee..kkkgivlvaltkdgevkvlslPsLkeikkvklpealdarr 308
                  ++++ l c+++++v   e  +++++v  a+++dg +  ++ P+Lk  ++v l +  ++ +
  MMETSP0890-20130614|7468_1 122 ADESQRLYCRSLYFVAD-ElkSDRQVVFCAVQNDGRALEFATPELKADREVVLEAVTQNGT 181
                 55677899******954.4578999999******************999999985554443 PP

>> PF02831.10  gpW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.046   2.1e+02      23      37 ..      41      55 ..      37      59 .. 0.86
   2 ?    7.9   0.0   0.00043         2      25      56 ..     148     181 ..     137     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.046
  PF02831.10 23 vvsvQkdgRrveyta 37
                vv+v  ++R +ey a
  MMETSP0890-20130614|7468_1 41 VVAVDNNNRAIEYAA 55
                789999*******87 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00043
  PF02831.10  25 s..vQkdgRrveytaasladLkkyiaeleaqlgl 56 
                    vQ dgR +e+    l+  ++++ e+ +q g+
  MMETSP0890-20130614|7468_1 148 FcaVQNDGRALEFATPELKADREVVLEAVTQNGT 181
                 345***********99998888888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       687  (0.0502487); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 674.53
//
Query:       MMETSP0890-20130614|7470_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-42  142.6   0.1    2.3e-13   49.2   0.0    3.5  3  PF13475.1 Domain of unknown function (DUF4116)
    0.00097   18.6   0.1        3.3    7.3   0.0    3.8  3  PF07892.6 Protein of unknown function (DUF1667)
     0.0021   17.9   0.2       0.53   10.1   0.1    2.3  2  PF13522.1 Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.015   14.7   1.0       0.17   11.3   0.7    2.2  2  PF09920.4 Uncharacterized protein conserved in archaea (DUF2150)
        4.4    6.8   8.7         12    5.4   0.0    3.6  5  PF12244.3 Protein of unknown function (DUF3606)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   2.3e-15   6.2e-12       7      49 .]      74     116 ..      68     116 .. 0.93
   2 !   49.2   0.0   8.4e-17   2.3e-13       1      49 []     118     166 ..     118     166 .. 0.98
   3 !   44.8   0.0     2e-15   5.5e-12       1      44 [.     168     211 ..     168     214 .. 0.96

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.3e-15
   PF13475.1   7 eavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                  +v +n++al+++++++k+D+eivl A+k +g+al+y+ +eL+
  MMETSP0890-20130614|7470_1  74 YLVLRNNFALYHAPDSFKSDREIVLSAIKEYGYALRYVANELK 116
                 578899***********************************97 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 8.4e-17
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 D Eivl+avk+ g+al+y+ +e+k+++++v++Avk+ g al+ya +eL+
  MMETSP0890-20130614|7470_1 118 DFEIVLKAVKNAGFALEYAADEMKSNRQVVMAAVKNAGFALEYAADELK 166
                 88*********************************************97 PP

  == domain 3    score: 44.8 bits;  conditional E-value: 2e-15
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsya 44 
                 DrE+vl+av+ +g al+y+ +eLk+D+eivl Av+++  al ++
  MMETSP0890-20130614|7470_1 168 DREVVLAAVQEYGLALEYAADELKSDREIVLTAVERDTRALQFC 211
                 9*************************************999987 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.48   1.3e+03       5      24 ..     109     128 ..     105     134 .. 0.80
   2 !    7.3   0.0    0.0012       3.3       4      29 ..     133     158 ..     131     179 .. 0.81
   3 !    5.5   0.0    0.0044        12       4      31 ..     183     210 ..     180     214 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.48
   PF07892.6   5 eYakkeltnpkriltstVkv 24 
                  Y+ +el++   i+   Vk 
  MMETSP0890-20130614|7470_1 109 RYVANELKSDFEIVLKAVKN 128
                 69999999999999888875 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0012
   PF07892.6   4 eeYakkeltnpkriltstVkveggel 29 
                  eYa +e+++++ ++++ Vk  g  l
  MMETSP0890-20130614|7470_1 133 LEYAADEMKSNRQVVMAAVKNAGFAL 158
                 69****************99877655 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0044
   PF07892.6   4 eeYakkeltnpkriltstVkveggelpl 31 
                  eYa +el++ + i+ + V+ +   l++
  MMETSP0890-20130614|7470_1 183 LEYAADELKSDREIVLTAVERDTRALQF 210
                 69*****************987766655 PP

>> PF13522.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0039        11      67     102 ..      87     126 ..      72     159 .. 0.70
   2 !   10.1   0.1   0.00019      0.53      67     106 ..     162     205 ..     148     215 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0039
   PF13522.1  67 frt.rsDsevllallkewG...ekalerldgmfafaiwdk 102
                   + +sD e++l ++ke+G     ++++l+ +f++++ + 
  MMETSP0890-20130614|7470_1  87 PDSfKSDREIVLSAIKEYGyalRYVANELKSDFEIVLKAV 126
                 3445899999999999999985555599999888876544 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00019
   PF13522.1  67 frt.rsDsevllallkewG...ekalerldgmfafaiwdkrekk 106
                   + +sD ev+la+++e+G   e a+++l+ + ++++++ ++++
  MMETSP0890-20130614|7470_1 162 ADElKSDREVVLAAVQEYGlalEYAADELKSDREIVLTAVERDT 205
                 33448****************99999*****9999998885554 PP

>> PF09920.4  Uncharacterized protein conserved in archaea (DUF2150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   6.1e-05      0.17      50     108 ..     122     181 ..     110     204 .. 0.85
   2 ?    6.2   0.1    0.0022         6      50      82 ..     172     204 ..     170     214 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.1e-05
   PF09920.4  50 iiaayenkelskeealeeleevreivleeveiidedkeelidsvqtslvavfaaaeeY.l 108
                 +++a++n+ +  e a++e+++ r++v++ v+  +  +e   d ++    +v+aa++eY l
  MMETSP0890-20130614|7470_1 122 VLKAVKNAGFALEYAADEMKSNRQVVMAAVKNAGFALEYAADELKSDREVVLAAVQEYgL 181
                 78999**************************999999999***************99943 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0022
   PF09920.4  50 iiaayenkelskeealeeleevreivleeveii 82 
                 ++aa+++  l  e a++el++ reivl+ ve +
  MMETSP0890-20130614|7470_1 172 VLAAVQEYGLALEYAADELKSDREIVLTAVERD 204
                 78999***********************99954 PP

>> PF12244.3  Protein of unknown function (DUF3606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.4   3.9e+03      23      29 ..      63      69 ..      62      69 .. 0.77
   2 ?    5.4   0.0    0.0045        12      21      46 ..     106     131 ..     101     142 .. 0.89
   3 ?    1.1   0.0     0.096   2.6e+02      23      56 ..     133     166 ..     131     167 .. 0.76
   4 ?    4.7   0.4    0.0075        20      22      56 ..     157     191 ..     151     192 .. 0.85
   5 ?   -0.3   0.0      0.28   7.6e+02      23      42 ..     183     202 ..     181     203 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.4
   PF12244.3 23 vkyWakr 29
                 kyW+++
  MMETSP0890-20130614|7470_1 63 SKYWTNK 69
                59**986 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0045
   PF12244.3  21 yevkyWakrlgvseeqLkaAVrkVGn 46 
                 y ++y a++l+   e + +AV+++G 
  MMETSP0890-20130614|7470_1 106 YALRYVANELKSDFEIVLKAVKNAGF 131
                 7899********************95 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.096
   PF12244.3  23 vkyWakrlgvseeqLkaAVrkVGnsakaVraeLa 56 
                 ++y a++ +  ++ + aAV+++G +++  ++eL+
  MMETSP0890-20130614|7470_1 133 LEYAADEMKSNRQVVMAAVKNAGFALEYAADELK 166
                 56777777777888999******88777777666 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0075
   PF12244.3  22 evkyWakrlgvseeqLkaAVrkVGnsakaVraeLa 56 
                  ++y a++l+  +e + aAV++ G +++  ++eL+
  MMETSP0890-20130614|7470_1 157 ALEYAADELKSDREVVLAAVQEYGLALEYAADELK 191
                 68999*****************9987777666665 PP

  == domain 5    score: -0.3 bits;  conditional E-value: 0.28
   PF12244.3  23 vkyWakrlgvseeqLkaAVr 42 
                 ++y a++l+  +e +  AV+
  MMETSP0890-20130614|7470_1 183 LEYAADELKSDREIVLTAVE 202
                 789999**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 712.34
//
Query:       MMETSP0890-20130614|7474_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-34  118.6   0.0    5.8e-18   64.8   0.0    2.4  2  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.6   1.2e-17   1.6e-13       9      99 ..       3      87 ..       1     109 [. 0.86
   2 !   64.8   0.0   4.2e-22   5.8e-18      12      93 ..     197     290 ..     188     301 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 1.2e-17
  PF00447.12  9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikr 99
                +++d e ++++sw+++   ++v+d++++    L+kyF+hsnf+SF RQLn +gFhk ++e ++ ++ ++   ++h+ +k ++ + + +++r
  MMETSP0890-20130614|7474_1  3 MVKD-EADDILSWDNE-GGIIVWDRDRLP---LSKYFRHSNFTSFQRQLNNFGFHKKRSEAGG-SSFRRSCAYAHPDLKGKSVQAILRLRR 87
                6655.7899*****98.899******996...6*************************99987.667889999999988877777666666 PP

  == domain 2    score: 64.8 bits;  conditional E-value: 4.2e-22
  PF00447.12  12 deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskk............kekiweFkhksFkkgkkel 93 
                 de+ +++i+w+e+g+ f+vld++ ++ ++LpkyF+hs++aSF RQL +Y F++v+  + + ++            k ki  ++h+ F +gk +l
  MMETSP0890-20130614|7474_1 197 DESPDSVITWTEDGSLFIVLDPDILSAEILPKYFRHSRLASFQRQLSLYHFRRVRLADIGGNAllfaavalnsneKAKILAYRHPLFLRGKSDL 290
                 678899****************************************************9988899999988876559**********9998763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.86
# Mc/sec: 1036.56
//
Query:       MMETSP0890-20130614|7476_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   12.7   2.7       0.11   12.3   0.4    2.0  2  PF07460.6 NUMOD3 motif (2 copies)


Domain annotation for each model (and alignments):
>> PF07460.6  NUMOD3 motif (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   7.9e-06      0.11      13      29 ..      45      61 ..      39      62 .. 0.86
   2 ?   -0.4   0.0      0.07   9.5e+02      10      15 ..      68      73 ..      66      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.9e-06
   PF07460.6 13 mSkegkknpnyGKthse 29
                m+k g+++++yGK++s+
  MMETSP0890-20130614|7476_1 45 MKKLGNGHSFYGKRKSN 61
                6777**********995 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.07
   PF07460.6 10 KkKmSk 15
                K+Km+ 
  MMETSP0890-20130614|7476_1 68 KNKMKG 73
                666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 332.03
//
Query:       MMETSP0890-20130614|7475_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-33  114.1   0.0    9.9e-19   66.8   0.0    3.5  3  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   7.2e-23   9.9e-19       3      84 ..       1      89 [.       1      90 [. 0.91
   2 !   36.4   0.0   2.2e-13     3e-09       1      55 [.     393     444 ..     393     453 .. 0.93
   3 !    6.7   0.0   0.00041       5.6      64      83 ..     498     518 ..     485     519 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 7.2e-23
                EEEEEESS--S-STSSSS-EEEEEEEECTTE..EE.....EEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSCSEE---E CS
  PF00168.25  3 vkvieAknLpnkdkngtsdpyvkvslggaks..kk.....krTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgkddflGea 84
                +++ ++++Lp+ d  g+sdpyv+++++ ++           rT+ +++tl PvWne f f+v +++ ++++l+V+d+d++g++d+lG+a
  MMETSP0890-20130614|7475_1  1 ITIDRGNDLPAADLDGSSDPYVTLEYLTDDGmaGYmvhdsNRTSHKSKTLFPVWNEAFAFQVLDPKKDKIKLQVFDYDTIGTHDLLGTA 89
                578899**********************888651156667***********************************************98 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 2.2e-13
                 EEEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEE CS
  PF00168.25   1 LkvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWnekftf 55 
                 L v+++eA++L + dk+g sdp+v  +lg+   ++ ++r+ ++tl+P+W e  +f
  MMETSP0890-20130614|7475_1 393 LVVEIFEARGLVAADKSGLSDPFVLAKLGN---QSWQSRTLRQTLEPKWFEYTEF 444
                 789***************************...889*************998777 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00041
                 E.EEEEEEECHSSSCSEE--- CS
  PF00168.25  64 e.leleVkdedrfgkddflGe 83 
                   lel+V+ded+ gk+++lG 
  MMETSP0890-20130614|7475_1 498 GvLELQVMDEDSRGKSELLGS 518
                 369****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       940  (0.0687537); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.15u 0.37s 00:00:01.52 Elapsed: 00:00:00.84
# Mc/sec: 2022.64
//
Query:       MMETSP0890-20130614|7478_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   20.4   9.9     0.0012   19.0   6.7    2.0  1  PF08492.7 SRP72 RNA-binding domain


Domain annotation for each model (and alignments):
>> PF08492.7  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   6.7   9.1e-08    0.0012      18      56 ..     216     253 ..     170     256 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 9.1e-08
   PF08492.7  18 eikkkksa.kkkRkpklpknynpgvkPDpERWLPrreRSs 56 
                 ++k++    k  +  k+ +  ++  +PDpERWLP++ R s
  MMETSP0890-20130614|7478_1 216 AKKRQAYLaKLSQQGKYDP--KKPTQPDPERWLPKKLRAS 253
                 2222222223333444332..456689***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       777  (0.0568315); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.76
# Mc/sec: 1034.22
//
Query:       MMETSP0890-20130614|7483_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1344  (0.0983031); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.24u 0.41s 00:00:01.65 Elapsed: 00:00:01.27
# Mc/sec: 1517.06
//
Query:       MMETSP0890-20130614|7481_1  [L=1040]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   99.5   0.0      2e-28   98.8   0.0    1.4  1  PF04096.9 Nucleoporin autopeptidase
    4.1e-16   59.1 332.6    0.00033   20.7  34.3    9.7  8  PF13634.1 Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> PF04096.9  Nucleoporin autopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   2.9e-32     2e-28       1     141 []     902    1039 ..     902    1039 .. 0.91

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 2.9e-32
                  S---BS-HHHHCCS-CCHHCCB-S-EE--TT---EEESS-B--TTS----TBTTTEEEETT....EEEESTT-.S----------S-EEEEEES---B-TTT--B---TTSTHHHHHHHHHCC-TT-EEEEE-TT--EEEEEESST CS
   PF04096.9    1 gYwtsPsieeLskmsleelksvenFtvgrkgyGsieFlepvdLseidldelfgkivelesk....evevYpde.ekkppvGegLNvpAeitlenvkpkdkktkkpikdeekealekkikklkekkgaeFvsydpetgtwvfkvkhf 141 
                  gY+t+P i+ L++m++ el+sv++F v r g+G+i++l+ vdL+++dld    + v + ++    +vevY+d+   kpp    LN++A+i lenv p +++ +    + ++  + ++i+k  e+ ga+ ++y+p+t +w f+vk+f
  MMETSP0890-20130614|7481_1  902 GYITEPPIDILETMTDVELSSVHDFAVIRSGFGKIRWLGAVDLTNVDLD----RDVRICERddtpSVEVYDDTaVAKPPHTLNLNREARIILENVGPSSTNPT----QRQRALFIRRIRKSVEEIGAKLIDYNPDTRVWQFEVKSF 1039
                  7************************************************....8888866433338*******655**********************77763....355667******************************987 PP

>> PF13634.1  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1  35.6    0.0017        11      11     104 ..       5      99 ..       2     106 .. 0.70
   2 ?    0.6  37.5     0.082   5.6e+02       9     108 ..      79     191 ..      78     200 .. 0.55
   3 ?  -11.2  57.5         2   1.4e+04       7      98 ..     313     399 ..     242     406 .. 0.53
   4 !   14.4  48.8   4.5e-06     0.031       8     114 .]     365     491 ..     362     495 .. 0.74
   5 !   20.7  34.3   4.8e-08   0.00033      13     111 ..     449     538 ..     448     547 .. 0.79
   6 !   14.9  35.2   3.1e-06     0.021       8     105 ..     547     653 ..     525     660 .. 0.77
   7 ?   -1.4   0.3      0.35   2.4e+03      91     109 ..     703     720 ..     687     741 .. 0.62
   8 ?    0.5   0.5     0.091   6.2e+02      56      96 ..     788     815 ..     762     837 .. 0.45

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0017
   PF13634.1  11 tsgglFGskpatggglFGasasq......tastaggglFGssntkatsttggglFGssatttasstsgglFGsstattqtttggglFGqaqaaqtqqsss 104
                 ++g++FGs ++ g g FG+++++      ++++ ++g+FG++++    tt+gg FG++++t  s++ ++ FG+ +a t +t+++g+FG++q+     s++
  MMETSP0890-20130614|7481_1   5 SGGTSFGSGNSGGFGGFGQTNTNsvfgqaSTNPRTSGSFGQAQQ----TTPGGAFGTTTSTWGSTAPQSAFGGAPA-TPATNTTGVFGSTQPFGGGGSTA 99 
                 56667777666666666666655444433367899999999975....7999999999998899999999999986.56777889999999864433333 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.082
   PF13634.1   9 aatsgglFGskpa......tggglFGasasqtastaggglFGssntkatsttggglFGssattt...asstsgglFGsstatt........qtttggglFGqaqaaqtqq......sssstta 108
                 a++++g FGs++       t++ +F          ++++lFGs++t   +++++g FG++ +      +++s g FG+++++t        +t+t+   FG++q++++qq      ++++t++
  MMETSP0890-20130614|7481_1  79 ATNTTGVFGSTQPfggggsTATQPF-------GGGQSSTLFGSQST---APNTTGGFGTNRSFGlqqPTTSSVGGFGQPQQQTtspfglasNTNTTATPFGGSQQQNQQQvgafglQQPATNG 191
                 5788899998654222222333333.......34456777777765...35556666666633231123333455666655444555555567899999999999988775555533333333 PP

  == domain 3    score: -11.2 bits;  conditional E-value: 2
   PF13634.1   7 qaaatsgglFGskpatggglFGasasqtastaggglFGssntkatsttggglFGssatttasstsgglFGsstattqt...ttggglFGqaqaaq 98 
                 + aa++ +lFG+++ ++g+ FG+++ q++++++ g FG+++      ++++lFG++   t+++++++lFGs t tt++   +++g+lFGq+q++q
  MMETSP0890-20130614|7481_1 313 AGAAPAPSLFGTQQ-SAGFGFGQQQ-QQQQQKPFGGFGNTT-----GQQSSLFGGNFG-TTTNQTQSLFGSGTPTTTAntvPQSGSLFGQQQQQQ 399
                 22334444444333.2455555554.244555555555554.....345566666664.455566666666544443312345677777766664 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 4.5e-06
   PF13634.1   8 aaatsgglFGs.kpa.......tggglFGasasqtastaggglFGssntkats.........ttggglFGssatttasstsgglFGsstatt...qtttgggl..FGqaqaaqtq...qssssttaggglFg 114
                 +++++++lFGs +p+       ++g+lFG+++   +++++++ FGss+++ +s           g++lFG++++  ++++++glFG++t+t+   q++++ggl  FG+++++q+q   +s  ++t++gglFg
  MMETSP0890-20130614|7481_1 365 TTNQTQSLFGSgTPTttantvpQSGSLFGQQQ---QQQKPAFGFGSSTNTFPSapapapttfGGGTSLFGNTTQ--QTTANSGLFGNTTTTQfgsQQPQTGGLfsFGNNNNQQQQntaSSFGQSTSSGGLFG 491
                 467899****87665334545557*******7...5889999999999883333444445556679******95..89**********99889988888999855777777766622223447899999998 PP

  == domain 5    score: 20.7 bits;  conditional E-value: 4.8e-08
   PF13634.1  13 gglFGs.kpatgg.glFGasasqtastaggglFGssntkatsttggglFGssatttasstsgglFGsstattqtttggglFGqaqaaqtqqssssttaggg 111
                 ++ FGs +p+tgg ++FG++++ +++++++++FG+s+      ++gglFG+s+t  +++++g+lFG+st    +t+ggglFG++++++    s++++a++g
  MMETSP0890-20130614|7481_1 449 TTQFGSqQPQTGGlFSFGNNNN-QQQQNTASSFGQST------SSGGLFGASTTFGNTPQTGNLFGAST----NTAGGGLFGNTSQQAGGFLSAPAPASAG 538
                 5679983555443366888875.889999******97......58***********************9....699**********986644555555544 PP

  == domain 6    score: 14.9 bits;  conditional E-value: 3.1e-06
   PF13634.1   8 aaatsgglFGskpa.tggglFGasasqtastaggglFGssntkatsttggglFGssatttass....tsgglFG..........sstattqtttggglFGqaqaaqtqqssss 105
                 ++++++ lFG++++  ++g FG+s+    +t+g +lFG+s+  a+++++gglFGs++++++++    t+gglFG          ++  +++ + g++lF +++++q+qq+  +
  MMETSP0890-20130614|7481_1 547 NTSQQKPLFGATNTfGSTGGFGTST----NTGGVSLFGASSLPAPAPAPGGLFGSTTNASTTNsawgTQGGLFGtpvggstslfAP--SSNFSGGTSLFNNTTQQQQQQQPVA 653
                 4789999****999999*******7....69**********99999*********9976544434446799999777754443311..12347899******99987655433 PP

  == domain 7    score: -1.4 bits;  conditional E-value: 0.35
   PF13634.1  91 FGqaqaaqtqqssssttag 109
                 F ++++ q qq++s  t++
  MMETSP0890-20130614|7481_1 703 FNNNNNIQEQQKKS-LTSS 720
                 44444444333222.2222 PP

  == domain 8    score: 0.5 bits;  conditional E-value: 0.091
   PF13634.1  56 gglFGssa...tttasstsgglFGsstattqtttggglFGqaqa 96 
                 +  FG+++   ++t+  +  +l                  ++++
  MMETSP0890-20130614|7481_1 788 TDEFGQAShlgANTQEENPPSL----------------TTSNTN 815
                 2223332222211222222222................222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.46u 0.44s 00:00:01.90 Elapsed: 00:00:00.94
# Mc/sec: 2651.29
//
Query:       MMETSP0890-20130614|7484_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-33  111.6   0.2    1.4e-14   53.4   0.0    3.1  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
        6.8    6.3   8.6         15    5.2   3.0    2.3  2  PF02687.16 FtsX-like permease family


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.1e-10   7.6e-07      22      93 ..       4      71 ..       1      73 [. 0.95
   2 !   26.2   0.0   6.3e-10   4.3e-06       8      94 ..      94     182 ..      89     184 .. 0.89
   3 !   53.4   0.0     2e-18   1.4e-14       4      92 ..     194     283 ..     192     286 .. 0.96

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.1e-10
                HCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  PF00153.22 22 vttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93
                + tP++++Kt+lq     a++ +k ++++l+  y ++G+ +++ Gl + +l+ +++ a+ f+   +lk++l 
  MMETSP0890-20130614|7484_1  4 ILTPVELAKTKLQ----IAGNDQKVAIKTLGDAYNRQGPFAFFAGLDAVVLGFFLSGAVGFGGTAYLKTILL 71
                689**********....9999*********************************************999875 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 6.3e-10
                 HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHH.HH--.-.GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
  PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiy.keeG.i.rglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                  +la+++A ++a++v++P+++++++ +   + a+sk   +ld  ++ + +++G +  +l+  l + l+++++ a +kf++++++ ++l +
  MMETSP0890-20130614|7484_1  94 LILAALLASVAATIVVCPFEIARVKAM-VHDAARSKAPALLDSWREAViQNDGnFrSALFGTLDALLVKDIIFAIVKFSAFDKVSDFLYQ 182
                 689************************.88999999999****998766999*63478888899999*****************999875 PP

  == domain 3    score: 53.4 bits;  conditional E-value: 2e-18
                 HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---.GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
  PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGi.rglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                 s++ sl+aG +Ag+ aal+ +Pld + tr+ ++++s s + +g+l al+ +y  +Gi  gly G +p+ +      a+ fv++e+lkk l
  MMETSP0890-20130614|7484_1 194 SLVVSLAAGTLAGVGAALASQPLDAAFTRIESNEKSTSDNTTGLLTALRDVYNDKGIlDGLYAGAVPRAVFAGTLIALEFVFFEFLKKQL 283
                 78899**************************9999999******************979****************************987 PP

>> PF02687.16  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.0    0.0022        15      55     110 ..      48     108 ..      40     119 .. 0.62
   2 ?    3.2   0.1    0.0093        64      51      84 ..     194     227 ..     187     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0022
  PF02687.16  55 gliglllGlllglllaqllsqallk......fnssslpisldpitlllilllilllallaal 110
                 +++g++l+  +g+  + +l+++ll+      f + +++  l   +l+lil+++l+ ++ +++
  MMETSP0890-20130614|7484_1  48 VVLGFFLSGAVGFGGTAYLKTILLSggialkF-QEDTTAALVNPDLALILAALLASVAATIV 108
                 689999999************99998888742.33333333333333333333333322222 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0093
  PF02687.16  51 alligliglllGlllglllaqllsqallkfnsss 84 
                 +l+++l ++ l+ + + l++q+l  a+  ++s++
  MMETSP0890-20130614|7484_1 194 SLVVSLAAGTLAGVGAALASQPLDAAFTRIESNE 227
                 7889999999999999999999999887744443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.56
# Mc/sec: 1330.83
//
Query:       MMETSP0890-20130614|7486_1  [L=911]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   52.9  10.0    3.2e-06   26.7   0.0    5.3  5  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.2    0.0018        24      12      37 ..      41      65 ..      29      66 .. 0.78
   2 !   26.7   0.0   2.3e-10   3.2e-06       6      38 ..      86     123 ..      82     124 .. 0.96
   3 !   20.1   1.5   2.7e-08   0.00036       9      39 .]     137     166 ..     130     166 .. 0.88
   4 ?   -0.3   0.0     0.076     1e+03      21      39 .]     433     453 ..     414     453 .. 0.74
   5 ?    0.4   0.0     0.046   6.2e+02      11      24 ..     860     873 ..     853     881 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0018
                SSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27 12 spVtcvafspdgpllasgSrDgtirl 37
                +p++++++s     +a g++Dg ir+
  MMETSP0890-20130614|7486_1 41 GPIWALSCSIR-GSIAVGCCDGIIRI 65
                45555666666.889**********8 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 2.3e-10
                 EEESSSSSEEEEEEESS.....STEEEEEETTSEEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspd.....gpllasgSrDgtirlW 38 
                 +lrgHt++V  +a+ p        ll+s S+D+t rlW
  MMETSP0890-20130614|7486_1  86 ELRGHTGAVLHLAWGPAeksdkDELLISVSEDKTARLW 123
                 69************************************ PP

  == domain 3    score: 20.1 bits;  conditional E-value: 2.7e-08
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  H ++V ++af ++   +++g+ D+t+r+W+
  MMETSP0890-20130614|7486_1 137 SHGGAVISCAFLHT-DSFVTGGFDRTVRIWH 166
                 466***********.***************6 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.076
                 SS..STEEEEEETTSEEEEEE CS
  PF00400.27  21 pd..gpllasgSrDgtirlWd 39 
                 p+  g++ + +S+Dg +  W+
  MMETSP0890-20130614|7486_1 433 PSasGNVAVGASEDGALLFWH 453
                 4555999999*****999995 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.046
                 SSSEEEEEEESSST CS
  PF00400.27  11 tspVtcvafspdgp 24 
                 +++V+++afs d  
  MMETSP0890-20130614|7486_1 860 NNAVSDCAFSEDDG 873
                 589*******9944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1019  (0.0745319); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.40u 0.39s 00:00:01.79 Elapsed: 00:00:01.06
# Mc/sec: 2059.51
//
Query:       MMETSP0890-20130614|7490_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 248.04
//
Query:       MMETSP0890-20130614|7485_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-19   68.6   0.0    1.3e-18   67.4   0.0    1.8  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    9.9e-13   48.4   0.2    3.6e-06   27.0   0.1    2.7  3  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    1.8e-09   37.3   0.0    4.5e-09   36.0   0.0    1.7  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    7.8e-09   35.6   1.1    2.8e-06   27.4   0.2    3.1  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
      4e-08   32.6   0.1    1.5e-07   30.7   0.0    1.9  2  PF01593.19 Flavin containing amine oxidoreductase
    5.8e-07   28.2   0.6    5.9e-06   24.8   0.2    2.4  3  PF03486.9  HI0933-like protein
      2e-05   23.5   0.2      2e-05   23.5   0.1    2.3  3  PF00890.19 FAD binding domain
    3.5e-05   22.7   0.1    3.5e-05   22.7   0.1    2.8  3  PF01266.19 FAD dependent oxidoreductase
    7.9e-05   21.7   1.1    0.00051   19.1   0.0    2.5  3  PF01946.12 Thi4 family
    0.00012   21.1   0.1    0.00012   21.1   0.0    1.6  1  PF12831.2  FAD dependent oxidoreductase
    0.00025   21.1   0.4       0.12   12.5   0.0    2.7  2  PF13241.1  Putative NAD(P)-binding
    0.00036   19.4   0.6      0.006   15.3   0.1    2.4  2  PF01134.17 Glucose inhibited division protein A
    0.00052   19.0   0.0    0.00052   19.0   0.0    1.7  2  PF01494.14 FAD binding domain
     0.0011   18.4   0.0      0.017   14.5   0.0    2.5  3  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
     0.0013   18.3   0.3        0.2   11.2   0.0    2.8  2  PF13454.1  FAD-NAD(P)-binding
     0.0029   17.2   0.0     0.0071   15.9   0.0    1.7  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.007   15.7   0.1       0.12   11.6   0.0    2.3  2  PF02558.11 Ketopantoate reductase PanE/ApbA
     0.0075   16.0   0.1      0.014   15.2   0.0    1.5  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
     0.0095   15.9   0.1        5.8    6.9   0.0    2.8  2  PF01488.15 Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.021   14.2   0.1        1.2    8.5   0.0    2.3  2  PF03853.10 YjeF-related protein N-terminus
      0.024   13.8   0.1      0.055   12.7   0.1    1.5  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
      0.031   13.8   0.0       0.07   12.6   0.0    1.6  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
      0.037   13.0   0.1       0.18   10.8   0.0    1.9  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
       0.04   13.1   0.0      0.068   12.4   0.0    1.4  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
      0.063   12.6   0.1       0.19   11.0   0.0    1.9  2  PF01965.19 DJ-1/PfpI family
      0.064   11.3   0.0       0.27    9.2   0.0    1.8  2  PF00743.14 Flavin-binding monooxygenase-like
      0.073   12.9   0.8       0.38   10.6   0.0    2.4  2  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   2.6e-21   1.3e-18       1     198 [.     201     514 ..     201     516 .. 0.88

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 2.6e-21
                 SEEEE----HHHHHHHHHHHTTSEEEEECSSSSSTB.TSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B.----TGCCHTEEEC.SSHHHHHHHHHHCST.......................TTEEEEE-........................................................................................................................-GGGCHHSS--BESSSSBBE-T.TSBCSSTTEEE---TCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxx........................................................................................................................xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeggtcv.nrgclpkkllvevaegreeleelalkvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGar.prtlgipgvevailargvedsdeilellek.......................pkkvvvvG........................................................................................................................tkllaekagveldprggivVde.ylrtsvpgiyaiGDvaeg 198
                 +v++iG+GpaGl+aa +l q+g+kv+++e+e+++      ++p+ +l + +             v+ l ++gie+     v+++ +g++     +++v        ++ + d++++A G++ pr l++pg  +   + g++ + e+l+  +k                        + v+v+G                                                                                                                         + +aek++++ld+r+ i      + t+++g++a+GD+  g
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIGGlLMYGIPNMKLDKDKVL---------RRVHLLAEEGIEF-----VTNAHIGQN----VDVNV--------LRANNDAVILAIGSTmPRDLPLPGR-Q---GTGIHFAMEFLTQNQKrllmtregtlasawdkdsfvtaeGRDVIVIGggdtgtdcigtsmrhrcksivnfelmgqppptrastnpwpewpkvfgvdyghaevravfgkdpraygvittefvlddnkhvkavrtsnaklgpkgveivpdtqrewpadlvilamgfvspEATIAEKLNLNLDQRNNIHAEYgDYHTNLEGVFAAGDCRRG 514
                 599*****************************988767778888887444332.........345566899****.....666666655....12222........45899********888********6.3...45688888888888888999999*************97444****************************************************************************************************************************9955566*************99876889************876 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   7.1e-09   3.6e-06       1      38 [.     203     239 ..     203     253 .. 0.88
   2 !   18.1   0.0   3.8e-06    0.0019     115     184 ..     274     363 ..     250     376 .. 0.70
   3 ?   -1.8   0.0       4.6   2.3e+03     120     148 ..     454     485 ..     430     519 .. 0.60

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7.1e-09
   PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwl 38 
                 +V+G+G+aGla+adnl+++g + + +++r++++Gg   
  MMETSP0890-20130614|7485_1 203 AVIGSGPAGLAAADNLNQAGHK-VTVYEREDRIGGLLM 239
                 69********************.***********9765 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.8e-06
   PF13738.1 115 fevrvtdgrevrakalvlatgavskpktlglpg..............sadkeavhleevlepe.....................dlkgkrvvVvGgghsAidall 184
                  +v+v+   + + +a++la+g   +p+ l+lpg              ++             +                     +++g+ v+V+Ggg ++ d++ 
  MMETSP0890-20130614|7485_1 274 QNVDVNVL-RANNDAVILAIGS-TMPRDLPLPGrqgtgihfamefltQN-------------QkrllmtregtlasawdkdsfvTAEGRDVIVIGGGDTGTDCIG 363
                 44555444.7789********8.69********6666666666666533.............133334444444444555557789****************985 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 4.6
   PF13738.1 120 tdgrevrakalvlatgavskpktlglpg....s 148
                 +++re  a+ ++la+g v +p     ++     
  MMETSP0890-20130614|7485_1 454 DTQREWPADLVILAMGFV-SPEATIAEKlnlnL 485
                 334477799999999965.44444344445541 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     9e-12   4.5e-09       1      34 [.     204     237 ..     204     249 .. 0.95

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 9e-12
   PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGr 34 
                 ++G+G +Gl+aA  L +ag++v+v+e++dr+GG 
  MMETSP0890-20130614|7485_1 204 VIGSGPAGLAAADNLNQAGHKVTVYEREDRIGGL 237
                 8*******************************96 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   5.6e-09   2.8e-06       1      63 [.     201     272 ..     201     286 .. 0.76
   2 ?    5.2   0.0      0.05        25       2      18 ..     349     365 ..     348     376 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.6e-09
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS.......TTSSHHHHHHH..HHHHHHTTEEEETTEEE CS
  PF00070.22   1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrll.......raldeeiakil..qkklekngievllntkv 63 
                 +v+v+G+G  Gl +A  l++ g+kVtv er+dr+        +++  +  k+l   + l ++gie+++n+++
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIGgllmygiPNMKLDKDKVLrrVHLLAEEGIEFVTNAHI 272
                 69*******************************975544555444444444442235567888888888876 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.05
                 EEEE---HHHHHHHHHH CS
  PF00070.22   2 vvvvGGGyiGlElAaal 18 
                 v+v+GGG++G ++ ++ 
  MMETSP0890-20130614|7485_1 349 VIVIGGGDTGTDCIGTS 365
                 89********9987665 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     3e-10   1.5e-07       2      29 ..     210     237 ..     209     239 .. 0.96
   2 ?   -1.8   0.0       2.2   1.1e+03     229     261 ..     431     468 ..     427     470 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 3e-10
                 ---HHHHHHHH---EEEEEESSS----- CS
  PF01593.19   2 aGLaAArqLlqaGfdVtvlEArdrvGGR 29 
                 aGLaAA  L qaG++Vtv+E++dr+GG 
  MMETSP0890-20130614|7485_1 210 AGLAAADNLNQAGHKVTVYEREDRIGGL 237
                 9**************************5 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.2
                 TEEEEEEEEET.....SCEEEEEECSSEEEESEEEE-S CS
  PF01593.19 229 nkrVksitkeg.....dgvtvttedgrtykaDaVvvTl 261
                 nk Vk +++++     +gv+++  ++r+ +aD V++++
  MMETSP0890-20130614|7485_1 431 NKHVKAVRTSNaklgpKGVEIVPDTQREWPADLVILAM 468
                 6778888888888888999999999999*******997 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.2e-08   5.9e-06       2      36 ..     201     235 ..     200     242 .. 0.93
   2 ?    0.6   0.0      0.27   1.3e+02       2      17 ..     348     363 ..     347     379 .. 0.77
   3 ?   -3.3   0.0       4.2   2.1e+03     143     166 ..     449     472 ..     412     477 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.2e-08
   PF03486.9   2 dviviGgGaAGlmaAisaakrgakVllldkakklg 36 
                 +v+viG G+AGl aA +++++g+kV+++++++++g
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIG 235
                 69*****************************9998 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.27
   PF03486.9   2 dviviGgGaAGlmaAi 17 
                 dviviGgG  G  +  
  MMETSP0890-20130614|7485_1 348 DVIVIGGGDTGTDCIG 363
                 8*******99976655 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 4.2
   PF03486.9 143 frvktkseeeleadklvlAtGGkS 166
                 +++  ++++e+ ad ++lA+G  S
  MMETSP0890-20130614|7485_1 449 VEIVPDTQREWPADLVILAMGFVS 472
                 333337899999999999999665 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   3.9e-08     2e-05       2      36 ..     202     236 ..     201     241 .. 0.93
   2 ?   -2.9   0.9         4     2e+03       1       9 [.     348     356 ..     348     361 .. 0.84
   3 ?   -1.9   0.0         2     1e+03     392     407 ..     498     513 ..     489     518 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.9e-08
                 EEEE-------HHHHHHHCHTT-EEEE-SS-CCGS CS
  PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqetgg 36 
                 v ViGsG AGlaAA ++++ag+kv+v e e++ gg
  MMETSP0890-20130614|7485_1 202 VAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIGG 236
                 89***************************998877 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4
                 SEEEE---- CS
  PF00890.19   1 DvvViGsGl 9  
                 Dv+ViG+G 
  MMETSP0890-20130614|7485_1 348 DVIVIGGGD 356
                 9*******5 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 2
                 ...S-B--EE-----B CS
  PF00890.19 392 dgqpipGLYAaGevag 407
                   ++++G +AaG +  
  MMETSP0890-20130614|7485_1 498 YHTNLEGVFAAGDCRR 513
                 56789*******9974 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   6.9e-08   3.5e-05       2      34 ..     202     235 ..     201     237 .. 0.93
   2 ?   -3.2   1.8       5.2   2.6e+03       1      11 [.     348     358 ..     348     362 .. 0.89
   3 ?   -0.4   0.0      0.74   3.8e+02     187     205 ..     456     474 ..     406     516 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 6.9e-08
                 EEEE----HHHHHHHHHHHTT-EEEEEESS.STT CS
  PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekg.dia 34 
                 v++iG+G +Gl++A  L ++g+kVt++e++ +i+
  MMETSP0890-20130614|7485_1 202 VAVIGSGPAGLAAADNLNQAGHKVTVYEREdRIG 235
                 99****************************6766 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 5.2
                 EEEEE----HH CS
  PF01266.19   1 dvviiGgGivG 11 
                 dv++iGgG +G
  MMETSP0890-20130614|7485_1 348 DVIVIGGGDTG 358
                 8*******888 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.74
                 ES.EEEEEEEE----THHH CS
  PF01266.19 187 dgsiradkvvlAaGawssk 205
                 +++  ad v+lA+G  s++
  MMETSP0890-20130614|7485_1 456 QREWPADLVILAMGFVSPE 474
                 2245569999999987766 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     1e-06   0.00051      18      57 ..     200     239 ..     193     280 .. 0.88
   2 ?   -0.1   0.0      0.73   3.7e+02      15      32 ..     344     361 ..     333     374 .. 0.80
   3 ?   -2.2   0.0       3.2   1.6e+03     122     187 ..     426     494 ..     420     503 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1e-06
                 EEEEEE-------HHHHHHHTSTS-EEEEESSS------- CS
  PF01946.12  18 sDvvivGaGssGltaayylakkdlkvailerklsiGGGaw 57 
                 + v+++G+G++Gl+aa  l +++ kv++ er+  iGG   
  MMETSP0890-20130614|7485_1 200 MSVAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIGGLLM 239
                 6799****************************99999655 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.73
                 HTEEEEEEE-------HH CS
  PF01946.12  15 yaesDvvivGaGssGlta 32 
                     Dv+++G+G +G  +
  MMETSP0890-20130614|7485_1 344 AEGRDVIVIGGGDTGTDC 361
                 4557*********99765 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 3.2
                 -----.------EEEEHHHHT-..T---EE-E...EEEEEE-------------HHHHH----S----- CS
  PF01946.12 122 livrdgervaGvvinwtlvelaglhvDPlvie...akvvvdatGhdaevvavlvkrikleekiekvkge 187
                  ++ d++ v+ v +  + +  +g+ + P + +   a +v+ a G  ++ +++++k + + ++ ++++ e
  MMETSP0890-20130614|7485_1 426 FVLDDNKHVKAVRTSNAKLGPKGVEIVPDTQRewpADLVILAMGFVSPEATIAEKLNLNLDQRNNIHAE 494
                 455666888888888888888888888888763335699999999999999999988888888888776 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.4e-07   0.00012       2      42 ..     202     242 ..     201     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.4e-07
   PF12831.2   2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsgl 42 
                 v+V+G gpaG+aAA    ++G kv++ er++++GG+l  g+
  MMETSP0890-20130614|7485_1 202 VAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIGGLLMYGI 242
                 89*********************************997776 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00024      0.12       7      40 ..     199     232 ..     197     293 .. 0.78
   2 ?    5.9   0.0     0.026        13       2      32 ..     341     371 ..     340     379 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00024
                 T-EEEEE-------HHHHHHTT---EEEEE-SS- CS
   PF13241.1   7 gkkvlvvGgGevAarkvrklleagakvtvvspei 40 
                 g  v v+G G+ ++  + +l +ag kvtv+  e 
  MMETSP0890-20130614|7485_1 199 GMSVAVIGSGPAGLAAADNLNQAGHKVTVYERED 232
                 67899*************************9883 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.026
                 EE--TT-EEEEE-------HHHHHHTT---E CS
   PF13241.1   2 fldlkgkkvlvvGgGevAarkvrklleagak 32 
                 f+  +g+ v+v+GgG+ ++  + + +++ +k
  MMETSP0890-20130614|7485_1 341 FVTAEGRDVIVIGGGDTGTDCIGTSMRHRCK 371
                 67789***********999877776666665 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.2e-05     0.006       2      37 ..     202     236 ..     201     295 .. 0.89
   2 ?    2.0   0.0      0.13        65       1      15 [.     348     362 ..     348     376 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.2e-05
                 EEEE-------HHHHHHHH----EEEEES-GGG--- CS
  PF01134.17   2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37 
                 v ViG G AG++AA ++ ++G+kv+ + ++ d+i+ 
  MMETSP0890-20130614|7485_1 202 VAVIGSGPAGLAAADNLNQAGHKVTVY-EREDRIGG 236
                 89***********************99.66666654 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.13
                 SEEEE-------HHH CS
  PF01134.17   1 dviViGgGhAGceAA 15 
                 dviViGgG  G+ + 
  MMETSP0890-20130614|7485_1 348 DVIVIGGGDTGTDCI 362
                 8**********9875 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     1e-06   0.00052       3      34 ..     201     232 ..     199     234 .. 0.93
   2 ?   -2.7   0.3       4.1   2.1e+03       3      13 ..     348     358 ..     347     359 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1e-06
                 CEEE--------HHHHHHHHH.HHEEEEESSS CS
  PF01494.14   3 dVlIVGaGpaGlmlallLseaGvrvvlvekhs 34 
                 +V+++G+GpaGl +a  L +aG +v++ e+ +
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYERED 232
                 79*************************99975 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.1
                 CEEE------- CS
  PF01494.14   3 dVlIVGaGpaG 13 
                 dV+++G+G +G
  MMETSP0890-20130614|7485_1 348 DVIVIGGGDTG 358
                 8*******999 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.3e-05     0.017      22      53 ..     201     232 ..     189     234 .. 0.90
   2 ?   -1.5   0.0       2.9   1.4e+03      22      41 ..     348     367 ..     343     372 .. 0.82
   3 ?   -0.4   0.0       1.3   6.4e+02      20      36 ..     460     476 ..     455     487 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.3e-05
                 EEEEE-------HHHHHHHH---EEEE--SST CS
  PF01262.16  22 kvvviGaGvvGlgAievakglgaevvaldkrp 53 
                  v viG+G +Gl+A++  ++ g++v+++++ +
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYERED 232
                 699************************99875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 2.9
                 EEEEE-------HHHHHHHH CS
  PF01262.16  22 kvvviGaGvvGlgAievakg 41 
                  v+viG+G  G+  i + ++
  MMETSP0890-20130614|7485_1 348 DVIVIGGGDTGTDCIGTSMR 367
                 699********998887665 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.3
                 --EEEEE-------HHH CS
  PF01262.16  20 pakvvviGaGvvGlgAi 36 
                 pa +v+++ G+v+ +A 
  MMETSP0890-20130614|7485_1 460 PADLVILAMGFVSPEAT 476
                 899**********9986 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0004       0.2       1      39 [.     203     236 ..     203     245 .. 0.83
   2 ?    4.2   0.0      0.06        30     126     154 ..     441     469 ..     423     471 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0004
   PF13454.1   1 aIiGaGprGlsvlerLlarakkekpleitvfdp.spagag 39 
                 a+iG Gp+Gl+++ +L +       +++tv+++   +g g
  MMETSP0890-20130614|7485_1 203 AVIGSGPAGLAAADNLNQA-----GHKVTVYEReDRIG-G 236
                 89**************888.....59999999944556.4 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.06
   PF13454.1 126 dlepegdgqtvlladgesleadaVvlAtG 154
                 + +  ++g++++ + ++++ ad V+lA+G
  MMETSP0890-20130614|7485_1 441 NAKLGPKGVEIVPDTQREWPADLVILAMG 469
                 333344688999999*************9 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-05    0.0071       1      32 [.     201     232 ..     201     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-05
                 EEEEE-------HHHHHHHTTEEEEEEE-S-H CS
  PF01210.18   1 kvavlGaGswGtalAkvlaenghevrlWvree 32 
                 +vav+G+G  G a A  l++ gh+v+++ re+
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYERED 232
                 59**************************9996 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00024      0.12       1      33 [.     202     234 ..     202     280 .. 0.84
   2 ?    1.6   0.0      0.29   1.5e+02     109     147 ..     407     445 ..     403     468 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00024
                 EEEE-----------HHHHHHH-EEEE----HH CS
  PF02558.11   1 iailGaGaiGsllaakLakagadvtlilrsrrl 33 
                 +a++G+G  G   a +L++ag++vt++ r++r+
  MMETSP0890-20130614|7485_1 202 VAVIGSGPAGLAAADNLNQAGHKVTVYEREDRI 234
                 69***************************9876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.29
                 HHTTTS-TTTB----EE--EEE-----EEESS--EEE-- CS
  PF02558.11 109 elrealpkenvlggvtthgatregpgevhhagsgeikig 147
                 e+r+ ++k++  +gv+t +++++++ +v+     + k+g
  MMETSP0890-20130614|7485_1 407 EVRAVFGKDPRAYGVITTEFVLDDNKHVKAVRTSNAKLG 445
                 578888899999999999999999999987776666665 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.7e-05     0.014       2      34 ..     200     232 ..     199     267 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.7e-05
                 BEBEEB-------HHHHHHHH---EEEE--SSH CS
  PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtk 34 
                 +++++iG G  G   a nl++ag++v+vy+r+ 
  MMETSP0890-20130614|7485_1 200 MSVAVIGSGPAGLAAADNLNQAGHKVTVYERED 232
                 579***************************984 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.011       5.8      12      45 ..     199     231 ..     191     326 .. 0.89
   2 ?    5.9   0.0     0.023        11       8      40 ..     342     374 ..     337     375 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.011
                 --EEEEE----HHHHHGGG--TTT-E.EEE---- CS
  PF01488.15  12 gkkvlviGAGemarlvakhLlekgvkkiviaNRt 45 
                 g +v viG G ++ ++a +L + g k +++  R 
  MMETSP0890-20130614|7485_1 199 GMSVAVIGSGPAGLAAADNLNQAGHK-VTVYERE 231
                 7899*******************999.9999996 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.023
                 ....--EEEEE----HHHHHGGG--TTT-E.EE CS
  PF01488.15   8 eslkgkkvlviGAGemarlvakhLlekgvkkiv 40 
                  + +g+ v+viG+G +++  + + +++++k iv
  MMETSP0890-20130614|7485_1 342 VTAEGRDVIVIGGGDTGTDCIGTSMRHRCKSIV 374
                 5678999**************999999999765 PP

>> PF03853.10  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0023       1.2      41      62 ..     207     237 ..     202     296 .. 0.74
   2 ?    3.4   0.0     0.088        45       5      46 ..     322     362 ..     318     373 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0023
  PF03853.10  41 nGgdGlvaArhLaqegakvdv.........l 62 
                 +G  Gl+aA  L q+g+kv+v         l
  MMETSP0890-20130614|7485_1 207 SGPAGLAAADNLNQAGHKVTVyeredriggL 237
                 6999*****************5555555551 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.088
  PF03853.10   5 seeLmenagravaevirallesnaekrvlvlcGpgnnGgdGl 46 
                 +  Lm + g+ ++++ +  +   ae r ++++G g++G d++
  MMETSP0890-20130614|7485_1 322 KRLLMTREGTLASAWDKDSF-VTAEGRDVIVIGGGDTGTDCI 362
                 56799999999999999999.89999999***********97 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00011     0.055       5      37 ..     200     232 ..     197     236 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00011
                 --EEEE-------HHHHHHHH----EEE----- CS
   PF07991.7   5 kkiaviGyGsqGhaqalnlrdsgldvvvglreg 37 
                   +aviG G  G a a nl + g +v+v  re+
  MMETSP0890-20130614|7485_1 200 MSVAVIGSGPAGLAAADNLNQAGHKVTVYERED 232
                 579************************988776 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014      0.07       1      33 [.     201     233 ..     201     271 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00014
                 EEEEE---------HHHHHCT.SEEEEE-S-HH CS
  PF02737.13   1 kvaVvGaGtmGagiAavfaragleVvlvdisee 33 
                 +vaV+G+G  G   A  + +ag++V+++++++ 
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYEREDR 233
                 59**************************99765 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.18      34      70 ..     197     233 ..     174     258 .. 0.85
   2 ?   -0.8   0.0       1.2   6.3e+02      18      54 ..     331     364 ..     314     376 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00035
                 GGGSEEE-B-------HHHHHHHH---EEEE--SS-- CS
  PF02826.14  34 lsgktvGiiGlGrIGqavakrlkafgmkvlaydrskk 70 
                  sg++v++iG G  G a+a+ l++ g kv++y+r  +
  MMETSP0890-20130614|7485_1 197 RSGMSVAVIGSGPAGLAAADNLNQAGHKVTVYEREDR 233
                 5899****************************99855 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.2
                 CCTT--.--GCG-B-.GGGSEEE-B-------HHHHH CS
  PF02826.14  18 vregewssekallgkelsgktvGiiGlGrIGqavakr 54 
                 + +  w   ++ +  + +g+ v +iG G  G+  + +
  MMETSP0890-20130614|7485_1 331 TLASAW---DKDSFVTAEGRDVIVIGGGDTGTDCIGT 364
                 444556...4444556799*********999887655 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.068       1      57 [.     200     255 ..     200     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00013
                 -EEEEE------------TTT---EEE---S-HHHHHHHH----SS-----HHHHH- CS
   PF03721.9   1 mkiaviGlGYvGlptavvlaekghevvgvDineekvdklnsgkipiyEpgleellkk 57 
                 m +aviG+G  Gl +a  l++ gh+v++ +  e+++  l    ip +  + +++l++
  MMETSP0890-20130614|7485_1 200 MSVAVIGSGPAGLAAADNLNQAGHKVTV-YEREDRIGGLLMYGIPNMKLDKDKVLRR 255
                 789********************99985.6677888888777777777777777766 PP

>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00038      0.19      68     101 ..     196     231 ..     195     287 .. 0.78
   2 ?   -3.3   0.0       9.7   4.9e+03      37      51 ..     346     360 ..     340     364 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00038
                 HH----EEEE----HHHHHHC-TT..--EE---GGG CS
  PF01965.19  68 aaagkpiaaiChgpalLaaagllk..gkrvtgfpnv 101
                 + +g  +a+i+ gpa Laaa+ l+  g++vt+++  
  MMETSP0890-20130614|7485_1 196 YRSGMSVAVIGSGPAGLAAADNLNqaGHKVTVYERE 231
                 5678889*******************9999999765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 9.7
                 GESEEEE----HHHH CS
  PF01965.19  37 dydalvlPGGhaaae 51 
                   d++v+ GG ++++
  MMETSP0890-20130614|7485_1 346 GRDVIVIGGGDTGTD 360
                 569999999988776 PP

>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00053      0.27       3      41 ..     201     239 ..     199     246 .. 0.94
   2 ?   -1.0   0.0      0.69   3.5e+02     182     203 ..     345     367 ..     334     377 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00053
  PF00743.14   3 kvaviGaGvsGlasikccleegleptcfersddiGGlwr 41 
                  vaviG+G +Gla+     + g + t +er d iGGl  
  MMETSP0890-20130614|7485_1 201 SVAVIGSGPAGLAAADNLNQAGHKVTVYEREDRIGGLLM 239
                 59**********************************975 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.69
  PF00743.14 182 kgkrvlviGlGnsggd.iavels 203
                 +g+ v+viG G++g+d i + + 
  MMETSP0890-20130614|7485_1 345 EGRDVIVIGGGDTGTDcIGTSMR 367
                 7899***********93444444 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00076      0.38       1      33 [.     202     233 ..     202     294 .. 0.86
   2 ?   -0.3   0.1       1.8   9.1e+02       1      15 [.     349     363 ..     349     376 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00076
                 EEEE---HHHHHHHCCCHH.--..EEEEES-HHH CS
  PF02254.13   1 iiiiGlGrvGrslaeeLre.gekdvvvidkdeer 33 
                 +++iG G  G + a++L + g+ +v+v ++++ r
  MMETSP0890-20130614|7485_1 202 VAVIGSGPAGLAAADNLNQaGH-KVTVYERED-R 233
                 68*****************777.6*9999864.4 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.8
                 EEEE---HHHHHHHC CS
  PF02254.13   1 iiiiGlGrvGrslae 15 
                 +i+iG G +G+  + 
  MMETSP0890-20130614|7485_1 349 VIVIGGGDTGTDCIG 363
                 79********97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.00u 0.41s 00:00:01.41 Elapsed: 00:00:00.79
# Mc/sec: 1680.48
//
Query:       MMETSP0890-20130614|7495_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.3e-113  376.8   0.0     9e-113  376.5   0.0    1.0  1  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.5   0.0  6.6e-117    9e-113       8     389 ..       2     383 ..       1     386 [. 0.94

  Alignments for each domain:
  == domain 1    score: 376.5 bits;  conditional E-value: 6.6e-117
  PF00022.14   8 VlDnGssttkaGfagedaPkavipsvvgkprgekvea.......klyvgdealekrpelevrnpvedGvvedwdameelwehvlkeelkvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgkatglvvDsGasvtsvvpvleGlvLkkairrldlgGkalteqlkellsskkvevtprylikkkkavetesfktleeeevleeiKesvcevsddpeg.....ekaeass...................eepessYeLPDgseiilgeerfrvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlwvskqeYeEkGssvve 389
                 V+DnG++++kaG ag d P++v+ ++vg+ ++ +++        ++ vgd   ++r+ l ++ p+ +G+vedw +me++w+ ++ + l v  e+hplllte+pln +  rek+++++fE+f+ pal++a +a+ls+yasg++tglv+D+G++ +++vpv+eG+++++a++r d+gG+++te l  ll++                  ++++ t++e  + +eiKe++c+ + dp++           +                   + + + YeLPDg++i+lg erfr+pEilF ps +g e         g+a++++ a +++d dlr++L+++iv++GG++l+pg+ +Rl ++l++lap+ +k+ki+ap+ er  s+WiGGSiLAsl tf+++wv ++eYeE+G+++  
  MMETSP0890-20130614|7495_1   2 VMDNGTGFIKAGMAGGDRPNVVFANAVGRAKHVRMMPggalegiDVAVGDAVRRHRGALILNWPMARGMVEDWADMERVWSATYSN-LGVSAENHPLLLTEAPLNASRHREKCAQLLFEHFNAPALFMAPQAILSLYASGRTTGLVLDVGDGLSHAVPVYEGFAIPHAVTRIDIGGRDITERLSLLLRRA-----------------GRALCTSAELDLCREIKEKCCYLATDPAQdertmA-----TiarrqrdtdisainidnapDAAPRFYELPDGTRITLGPERFRAPEILFSPSVLGAEDP-------GLAKVLHLAASKADLDLRSSLYSQIVLAGGSTLFPGFGDRLLSDLKHLAPPHTKLKIHAPP-ERLLSTWIGGSILASLATFNSMWVLRAEYEENGPHIFS 383
                 99******************************98666*******9****997779**************************99887.******************************************************************************************************4.................899*************************8554440.....25555666677778887665555566******************************999.......*************************************************************.*********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.48s 00:00:01.04 Elapsed: 00:00:00.62
# Mc/sec: 1499.66
//
Query:       MMETSP0890-20130614|7488_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   12.6   0.1         11    5.7   0.0    2.6  2  PF06971.8 Putative DNA-binding protein N-terminus


Domain annotation for each model (and alignments):
>> PF06971.8  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0027        38      18      45 ..     196     223 ..     195     224 .. 0.90
   2 ?    5.7   0.0   0.00081        11      13      40 ..     364     391 ..     363     395 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0027
                 HHHHHH----B--HHHHHHHHT--HHHH CS
   PF06971.8  18 LeeLkeegvervsSkelseaigidaaqi 45 
                 Le++  +g++ + S  ++  + +++a++
  MMETSP0890-20130614|7488_1 196 LEKIAPNGIKAIISSSIAHTMFVKSAKL 223
                 7788889******************985 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHH----B--HHHHHHHHT- CS
   PF06971.8  13 lYyryLeeLkeegvervsSkelseaigi 40 
                 +Y+++L+ L+++++ rv  + ++ +i i
  MMETSP0890-20130614|7488_1 364 KYHQALKDLLAKDIIRVLGAHVAHEIPI 391
                 7***************988888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.56s 00:00:01.09 Elapsed: 00:00:00.76
# Mc/sec: 1381.06
//
Query:       MMETSP0890-20130614|7493_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-55  186.2   0.0    1.2e-54  185.0   0.0    1.6  2  PF07714.12 Protein tyrosine kinase
    1.3e-53  181.7   0.0    2.5e-53  180.8   0.0    1.3  1  PF00069.20 Protein kinase domain
    0.00043   20.1   1.2      0.043   13.6   0.1    3.8  4  PF03109.11 ABC1 family
     0.0088   15.0   0.1      0.042   12.7   0.0    2.0  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.02   14.6   2.0      0.079   12.6   0.4    2.7  3  PF01923.13 Cobalamin adenosyltransferase
      0.042   12.4   0.5       0.23   10.0   0.3    2.2  2  PF04793.7  BRRF1-like protein
       0.44   10.2   2.5        1.3    8.7   1.7    1.8  1  PF02736.14 Myosin N-terminal SH3-like domain
        0.6   10.2   4.5         15    5.7   0.6    3.4  3  PF13864.1  Calmodulin-binding


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8     3e+03      84     101 ..      75     109 ..      73     125 .. 0.62
   2 !  185.0   0.0   7.3e-58   1.2e-54       7     257 ..     221     475 ..     216     477 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.8
                 -B--HHHHHHHT.................GTTGSB CS
  PF07714.12  84 kgGdLlefLrkk.................ekeklt 101
                 ++GdLl+ L ++                 +++kl+
  MMETSP0890-20130614|7493_1  75 AHGDLLTTLDRNivscldklqaaynlandRQTKLQ 109
                 68889988888855555555555555544444444 PP

  == domain 2    score: 185.0 bits;  conditional E-value: 7.3e-58
                 E-------EEEEEEETTTTSSEEEEEEEEE.....CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSS.EEEEEE---B--HHHHHHHT.GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCE...EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  PF07714.12   7 lGeGafGkVvegtlkgekekkevkVavKtl.....kesaeeeekeefleeakimkklkhpnivkllgvctkeep.llivteyvkgGdLlefLrkk.ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyy...kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                   +G  ++V+++ l+       ++VavK +     +es++e+ ++e+ +e++im kl+ p +v+l+g++t++ + + iv+e+++gG+L+  L +  e++ ++  ++  ++ qia+Gm+yL s+++ HrdL + NvLl++++ +kisDfGLar  e +++    +++++a   + +mapE+l+ k f++k+Dv+s+ ++l Ei+t  + p++gl+ne+++ ++  ++ + + p+++p++l+++++ Cw +e++ Rp+f+++v+
  MMETSP0890-20130614|7493_1 221 FARGGQAQVHRAFLD------GQQVAVKLVplgniSESEREKLTNELKRELAIMVKLRSPLVVQLYGIVTRNMSyFGIVLEFMDGGSLRARLDDViEHPVIEATQMRTWSRQIANGMRYLYSREVEHRDLKTSNVLLDQNSSCKISDFGLARCEELKSRLsstTRRHGAVGTLPFMAPEVLRLKPFSEKADVYSYAMTLIEIVT-RKVPWKGLTNEQIMMQVaVDKSHPDLPADTPSDLKSIIEACWVHEAAARPSFEDIVR 475
                 567778889999888......7889999874322134555556889999*********************6666489****************9856778899999**********************************************996666654437777788999*******************************.56**********99999788899999****************************987 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.0   1.4e-56   2.5e-53       8     257 ..     222     476 ..     217     478 .. 0.89

  Alignments for each domain:
  == domain 1    score: 180.8 bits;  conditional E-value: 1.4e-56
                 E----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH....HHHHHHHHH-TTB--EEEEEEESTEEE.EEEE--SC-EHHHHHH...HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.....CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST.HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTS CS
  PF00069.20   8 GsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr....ElkilkklsHpnivkllevfeekdely.lvleyveggdlfdllk...kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.....eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge.seedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkh 257
                  +G+ ++V +a   +++  vAvK +   + +++++++ ++    El+i+ kl++p +v+l+++++++ +++ +vle+++gg+l + l    ++  ++ ++++++ +qi++g++yl+s+++ HrDLK++N+Lld+++++ki+DFGla++       +s ++ +  vgt  +mAPEvl+  k  ++k+Dv+s++++l+e++t+k+p++g  +e+ ++++   + +++l+ d p      ++lk++i+ ++ +++a+R+++e+i+++
  MMETSP0890-20130614|7493_1 222 ARGGQAQVHRAFLDGQQ--VAVKLVPLGNISESEREKLTNelkrELAIMVKLRSPLVVQLYGIVTRNMSYFgIVLEFMDGGSLRARLDdviEHPVIEATQMRTWSRQIANGMRYLYSREVEHRDLKTSNVLLDQNSSCKISDFGLARCEelksrLSSTTRRHGAVGTLPFMAPEVLR-LKPFSEKADVYSYAMTLIEIVTRKVPWKGLtNEQIMMQVAVDKSHPDLPADTP------SDLKSIIEACWVHEAAARPSFEDIVRT 476
                 67888888888888776..*******999999999888778899********************99777777*********77766666666*******************************************************98999988899999****************.****************************9934445555555555555555554......89*********************9987 PP

>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.49   8.4e+02      52      96 ..     148     193 ..     127     212 .. 0.65
   2 !   13.6   0.1   2.5e-05     0.043      12      42 ..     214     243 ..     207     252 .. 0.90
   3 ?   -0.8   0.0      0.73   1.3e+03      31      80 ..     260     310 ..     256     318 .. 0.81
   4 ?    1.1   0.0       0.2   3.4e+02      36      61 ..     433     458 ..     425     496 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.49
  PF03109.11  52 ksDlkllkllakllkkiskearldleelvdelskelae.eldfkrE 96 
                 ++D ++++ +a+ ++  s e  ++l e +++++++l   e ++ r 
  MMETSP0890-20130614|7493_1 148 AKDDATTRAVAQKADVDSHEILVELSESIKKMESQLSDiEHNLARK 193
                 5666666666666666666666667777777766665324444444 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.5e-05
  PF03109.11  12 aefdeePlAaASiaQVHrAvlksgeeVavKv 42 
                 ++++++P+A +  aQVHrA l +g++VavK 
  MMETSP0890-20130614|7493_1 214 DQMESKPFARGGQAQVHRAFL-DGQQVAVKL 243
                 57899**************87.7*******6 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.73
  PF03109.11  31 vlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskea.rldleelv 80 
                 +lk++ ++ vK + p v + +   ++++ ++  +l+++  +  r +l+ ++
  MMETSP0890-20130614|7493_1 260 ELKRELAIMVKLRSPLVVQLYGIVTRNMSYFGIVLEFMDGGSlRARLDDVI 310
                 577788999********9999999999999988888888776556666655 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.2
  PF03109.11  36 eeVavKvqrpgvkkriksDlkllkll 61 
                 ++Vav   +p++     sDlk +   
  MMETSP0890-20130614|7493_1 433 MQVAVDKSHPDLPADTPSDLKSIIEA 458
                 68******************987654 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.46   7.8e+02     139     179 ..     158     201 ..     151     220 .. 0.74
   2 !   12.7   0.0   2.5e-05     0.042     115     166 ..     315     363 ..     292     377 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.46
   PF06293.9 139 vnHtdlnahnilldeee..ekakvwliDldkarrrlr.akkwke 179
                  + +d   h il++  e  +k++  l D +    r + ++k++e
  MMETSP0890-20130614|7493_1 158 AQKADVDSHEILVELSEsiKKMESQLSDIEHNLARKTsQDKARE 201
                 56788999999999999888999999999876555522444443 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.5e-05
   PF06293.9 115 laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                 ++ +  r+  ++++  ++ + +++v+H+dl   n+lld++     + + D+ 
  MMETSP0890-20130614|7493_1 315 IEATQMRTWSRQIANGMRYLYSREVEHRDLKTSNVLLDQNS---SCKISDFG 363
                 455556667799****************************8...77777774 PP

>> PF01923.13  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.75   1.3e+03      73      98 ..      33      58 ..      18     115 .. 0.70
   2 ?   12.6   0.4   4.6e-05     0.079       9      97 ..     137     219 ..     135     225 .. 0.84
   3 ?   -2.7   0.0       2.4   4.1e+03      26      56 ..     277     308 ..     273     348 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.75
                T-SS----CHHHHHHHHHHHHHHCHT CS
  PF01923.13 73 ekeelevteedveeleeeidelneel 98
                ++++  + e++++ele+ ++++++++
  MMETSP0890-20130614|7493_1 33 TDNAKALVEQHMTELEALLNRFQDAV 58
                34446666777777777777777443 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4.6e-05
                 --EE-----EE-TTCHHHHH---HHHHHHH---GGGCSTCCCHHHHHHHHHHHHHH--GTTS-TT-SS----CHHHHHHHHHHHHHHCH CS
  PF01923.13   9 GtTslvggervsKddprieayGtvDelnsaiglarseleeelkeeleriqeeLfdlgaelatpeekeelevteedveeleeeidelnee 97 
                 GtT+    + ++Kdd+  +a+++   + s+  l+       l e++++++++L d++ +la ++++++++  ++ v +le eid+++++
  MMETSP0890-20130614|7493_1 137 GTTHESAATCLAKDDATTRAVAQKADVDSHEILVE------LSESIKKMESQLSDIEHNLARKTSQDKARELKAGVLNLEVEIDQMESK 219
                 88888888888888888888888888888776665......5678999999999999999999888889999999**********9965 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 2.4
                 HHH---HHHHHHH---GGGCS.TCCCHHHHHH CS
  PF01923.13  26 ieayGtvDelnsaiglarsel.eeelkeeler 56 
                 +++yG v    s+ g++++ +   +l+++l++
  MMETSP0890-20130614|7493_1 277 VQLYGIVTRNMSYFGIVLEFMdGGSLRARLDD 308
                 66777777777777777766643333333333 PP

>> PF04793.7  BRRF1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00014      0.23      55     132 ..      79     156 ..      72     214 .. 0.88
   2 ?   -0.8   0.0      0.26   4.5e+02      88     144 ..     248     305 ..     236     324 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
   PF04793.7  55 ivpkirsniiyfLkeLeelsngkvqelikelldevleakdleLeeeLakllpkllklkypeaanvleeeeeqdyaeWc 132
                 ++  +  ni+ +L +L+ + n + ++++k  ld++l+a+   Le  + k+++ + k+  +++ +   +  ++d ++ +
  MMETSP0890-20130614|7493_1  79 LLTTLDRNIVSCLDKLQAAYNLANDRQTKLQLDKLLKAQTYALEVAMFKEIQVVAKIDGTTHESAATCLAKDDATTRA 156
                 6778899**************************************************999999998888888877655 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.26
   PF04793.7  88 evleakdleLeeeLakllpkllklkypeaanv.leeeeeqdyaeWclhhllgiseelr 144
                 +++e++  +L +eL ++l  ++kl++p ++++  ++  +++y    l++++g s ++r
  MMETSP0890-20130614|7493_1 248 NISESEREKLTNELKRELAIMVKLRSPLVVQLyGIVTRNMSYFGIVLEFMDGGSLRAR 305
                 6778888899999999999999999999999855677788888888888887665555 PP

>> PF02736.14  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.7   0.00076       1.3      16      39 ..     530     553 ..     529     555 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00076
                 EEEEEEESSEEEEEETTTEEEEEE CS
  PF02736.14  16 GeItsrkgdkvtVktedgktvtvk 39 
                 G+++s++gd  +V++++ k vtv+
  MMETSP0890-20130614|7493_1 530 GVVKSIDGDRAIVELSKDKVVTVS 553
                 89********************96 PP

>> PF13864.1  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.48   8.2e+02      71      94 ..      32      55 ..      21      58 .. 0.81
   2 ?    5.7   0.6    0.0085        15      27      95 ..     150     218 ..     133     221 .. 0.85
   3 ?    2.7   0.0     0.078   1.3e+02      37      53 ..     249     265 ..     242     282 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.48
   PF13864.1 71 skkrrkeelEkelaeiEedikkls 94
                +  + k+ +E+ ++e+E+ ++ ++
  MMETSP0890-20130614|7493_1 32 QTDNAKALVEQHMTELEALLNRFQ 55
                55678999*********9887775 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0085
   PF13864.1  27 eqeapkgvrllseeErlellegLkkkweelnkelqklplvldtlskkrrkeelEkelaeiEedikklsk 95 
                 + +++++v +  + + +e+l +L ++ ++++++l  + + l + + + + +el + + ++E +i+ ++ 
  MMETSP0890-20130614|7493_1 150 DDATTRAVAQKADVDSHEILVELSESIKKMESQLSDIEHNLARKTSQDKARELKAGVLNLEVEIDQMES 218
                 555666666667788999********************************************9999886 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.078
   PF13864.1  37 lseeErlellegLkkkw 53 
                 +se+Er++l ++Lk++ 
  MMETSP0890-20130614|7493_1 249 ISESEREKLTNELKREL 265
                 79************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.53s 00:00:01.29 Elapsed: 00:00:00.90
# Mc/sec: 1493.73
//
Query:       MMETSP0890-20130614|7487_1  [L=1604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   11.8 138.3     0.0099   15.0  13.1    9.2  9  PF04886.7 PT repeat
        1.1    8.9   4.2         22    4.8   0.1    3.5  3  PF10627.4 Curli assembly protein CsgE


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.5   0.00019       1.3       1      35 [.       4      38 ..       3      39 .. 0.83
   2 ?   -2.1  18.3      0.32   2.2e+03       2      35 ..      37      70 ..      28      78 .. 0.58
   3 ?    0.3  12.5     0.058     4e+02       2      34 ..      65      97 ..      57     102 .. 0.79
   4 ?   -0.1  15.2     0.076   5.2e+02       4      36 .]     103     135 ..      85     142 .. 0.87
   5 ?    3.4  11.1    0.0061        42       6      35 ..     129     158 ..     128     178 .. 0.67
   6 ?   15.0  13.1   1.4e-06    0.0099       2      31 ..     177     206 ..     168     209 .. 0.65
   7 ?   -2.6   9.9      0.47   3.2e+03       1      28 [.     205     233 ..     205     245 .. 0.76
   8 ?  -12.9   9.0         2   1.4e+04      10      11 ..     241     242 ..     226     259 .. 0.51
   9 ?   -2.7   0.7      0.51   3.5e+03      20      28 ..    1253    1261 ..    1252    1267 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00019
   PF04886.7  1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                +pT  P++ PT+ P+ +Pt+ P+  Pt+ Pt  Pt
  MMETSP0890-20130614|7487_1  4 EPTPGPSSIPTGMPSHAPTPDPSLMPTEIPTLVPT 38
                68888999999999999999999999999987776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.32
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                pT+ Pt+ P  qPT  Pt+ PT +P+  Pt+ Pt
  MMETSP0890-20130614|7487_1 37 PTSLPTNIPIPQPTKYPTPYPTPPPSLIPTAIPT 70
                4555555555555555555555555555555554 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.058
   PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34
                pTa Pt++P   PT  P++ PT+ P++ P+  P
  MMETSP0890-20130614|7487_1 65 PTAIPTTRPHSDPTSLPVPRPTALPSSRPSLIP 97
                788888888888888888888888888887666 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.076
   PF04886.7   4 aqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 ++P+ qPT  PT  P++ PT  P+  Pt+ Pt+
  MMETSP0890-20130614|7487_1 103 SAPSVQPTLIPTTFPVPKPTELPIPAPTSCPTE 135
                 678999999999999999999999999988885 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.0061
   PF04886.7   6 PteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 Pt+ PT+ PT  P + PT+ P+a Pt+ P+
  MMETSP0890-20130614|7487_1 129 PTSCPTETPTTLPHSIPTAVPIANPTNIPV 158
                 666666666666666666666666665543 PP

  == domain 6    score: 15.0 bits;  conditional E-value: 1.4e-06
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPt 31 
                 p+ +Pt+qP+v PT  Pt++P+++Pt  Pt
  MMETSP0890-20130614|7487_1 177 PSKEPTSQPSVLPTTKPTDEPSSEPTRIPT 206
                 555666666666666666666666666555 PP

  == domain 7    score: -2.6 bits;  conditional E-value: 0.47
   PF04886.7   1 qpTaqPteqPTvqPTgqPtaqP.TdqPta 28 
                 ++T+ P++ P++ PT  Pt  P T++Pt 
  MMETSP0890-20130614|7487_1 205 PTTSTPSSIPSTKPTRMPTFYPsTGEPTT 233
                 67888888888888888887775677775 PP

  == domain 8    score: -12.9 bits;  conditional E-value: 2
   PF04886.7  10 PT 11 
                 PT
  MMETSP0890-20130614|7487_1 241 PT 242
                 33 PP

  == domain 9    score: -2.7 bits;  conditional E-value: 0.51
   PF04886.7   20 aqPTdqPta 28  
                  ++PT q+++
  MMETSP0890-20130614|7487_1 1253 DNPTIQNSD 1261
                  666666654 PP

>> PF10627.4  Curli assembly protein CsgE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.014        99       6      42 ..     663     700 ..     661     707 .. 0.85
   2 ?   -0.1   0.1       0.1     7e+02       6      48 ..     814     856 ..     812     861 .. 0.88
   3 ?    4.8   0.1    0.0032        22       5      39 ..     972    1005 ..     971    1011 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.014
   PF10627.4   6 ildrtitrlGhdFyfefsskwrdis.ltekfnltikEr 42 
                 ++d+ + ++G+ F   f  ++r+ + l e+ ++ ++Er
  MMETSP0890-20130614|7487_1 663 VMDDDLLSIGDSFVIDFILSYREETpLIEDHTIIVEER 700
                 78899999*************98875888899999987 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.1
   PF10627.4   6 ildrtitrlGhdFyfefsskwrdisltekfnltikErvtaraG 48 
                 ++ +t  + G+ F   f  + +  +++ ++++ i+E+ +  +G
  MMETSP0890-20130614|7487_1 814 LVSDTCFQNGDTFTITFKYSQSGQYSSTDYIIYIRENDSTDSG 856
                 778899999********999999999**********9888877 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0032
   PF10627.4    5 lildrtitrlGhdFyfefsskwrdisltekfnlti 39  
                  +++d++   +G+ Fy +f+  +++   te+ n ti
  MMETSP0890-20130614|7487_1  972 ILIDDSALEIGDSFYVRFTTIYQNSI-TETLNFTI 1005
                  6899****************998766.55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1604 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.20u 0.37s 00:00:02.57 Elapsed: 00:00:01.15
# Mc/sec: 3313.58
//
Query:       MMETSP0890-20130614|7496_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-58  195.6   0.0    6.6e-58  195.1   0.0    1.2  1  PF00800.13 Prephenate dehydratase
    2.7e-07   29.7   0.0    6.9e-07   28.5   0.0    1.8  1  PF01842.20 ACT domain


Domain annotation for each model (and alignments):
>> PF00800.13  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.0   9.7e-62   6.6e-58       1     180 [.      51     231 ..      51     233 .. 0.97

  Alignments for each domain:
  == domain 1    score: 195.1 bits;  conditional E-value: 9.7e-62
                 EEE------HHHHHHCC--.....-EEE-S-HHHHHHHHCTTS-SEEEEEEEE------HHHHHHHHHSSEEEEEEEEEE---EEE-----....-TTT--EEEE-HHHHHHTHHHHHH-.TTSEEEE-S-----HHHHHHCT-TTEEEEE-S----------SECS-SS-S--EEEEEEEEET CS
  PF00800.13   1 vaylGpkgtyshqAalklfkgedveliplasiedvfeavesgeadyavvPiensteGsvretldlLldsdlkivgevvlpiehcllakpkt....kleeikkvyShpqalgQcskfLeenlpqaervavsStaaAaekvkassdetaaaIaselaaelyglkilaenIedkkdntTRFlvlgke 180
                 va++G++g+ys++Aa ++f gedv+++p+ s++dvf+ave+g+a y+++P+ens +Gs+++++dlL++ dl++ ge++l+++h+lla p+     k e+i  v Shpqal+Qc+++L +n  +++++a ++ta +a++++a+++ ++aaI+s+laa++ygl+ila++Ied+k n+TRF++lgk+
  MMETSP0890-20130614|7496_1  51 VAFQGEHGAYSEEAAYQHF-GEDVDTLPCVSFDDVFDAVETGRAAYGMLPMENSSAGSINKSYDLLMEYDLRVHGETILRVQHSLLALPHPetgeKPEKISVVRSHPQALAQCERYLIAN--GLNIEAGADTAGSAREIAAQKRLGVAAICSKLAAKRYGLEILATGIEDNKFNFTRFFILGKG 231
                 89*****************.************************************************99*****************998855545588*********************..***********************************************************997 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     1e-10   6.9e-07       2      64 ..     243     309 ..     242     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1e-10
                 EEEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS.....EEEEEEEEEECHHHHHHHHHHHHHH CS
  PF01842.20   2 vlevgvpDrPGlLaevfgaLadrgiNidsisqstsgdk....agivfvtvvvdeedleaaleaLkkl 64 
                 ++ + v D+PG L + ++ ++ r+iNi+++++++ +++     ++ f  +  ++ +++ a++aL +l
  MMETSP0890-20130614|7496_1 243 SIVFAVSDKPGSLVAALQEFGTRNINIIKLESRPRRRTvapgFNYLFYLDFEGHHSDPPAAAALMAL 309
                 6888899**********************************98888888888888888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 1208.60
//
Query:       MMETSP0890-20130614|7497_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-18   65.4   0.0    3.1e-06   26.9   0.0    5.0  5  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.8e-07   29.9   0.0    6.3e-05   22.4   0.0    3.7  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
     0.0055   15.1   3.0     0.0056   15.1   1.6    1.4  2  PF05918.6  Apoptosis inhibitory protein 5 (API5)


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   6.1e-05      0.28       1      65 [.      23      84 ..      23      86 .. 0.83
   2 ?   -3.3   0.1       1.9   8.8e+03      29      58 ..     174     198 ..     171     202 .. 0.76
   3 !   26.9   0.0   6.8e-10   3.1e-06       1      69 []     243     314 ..     243     314 .. 0.83
   4 !   14.6   0.0   4.7e-06     0.021       1      68 [.     345     426 ..     345     426 .. 0.74
   5 !    6.4   0.0    0.0017       7.8      25      69 .]     484     530 ..     474     530 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.1e-05
   PF14259.1  1 lyvrglppsvteedlreffspy.gkvegvriprnkdgrgrgfAfvefeseedAqkalkklnlvlkg 65
                +++r +p+svt++d+ ef++    + e++ +++n     +g+++    s e+A ++ +  +++l+g
  MMETSP0890-20130614|7497_1 23 VRLRSIPWSVTASDVCEFLGLKeDDDERIILVHN----ASGDGYARALSLEEAVRFQALDGMKLGG 84
                789****************985255788888888....6899999999999999888887777776 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.9
   PF14259.1  29 riprnkdgrgrgfAfvefeseedAqkalkk 58 
                 ri++n       +A+  f se+ Aq+a ++
  MMETSP0890-20130614|7497_1 174 RIMHN-----GAEAYAIFISEKLAQEAANN 198
                 56666.....45899999999999999775 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 6.8e-10
   PF14259.1   1 lyvrglppsvteedlreffspygkvegvrip..rnkd.grgrgfAfvefesee..dAqkalkklnlvlkgrtir 69 
                 l+vrglp++++ + +++ff +  ++++v +p  r +   +++g++fv f+     +A+ +++k+++ + gr ++
  MMETSP0890-20130614|7497_1 243 LRVRGLPFEANRQMIVDFFQNI-SIDNVFFPnvR-PSdSKPSGECFVAFDQGIsfAAKMCIEKNGQEISGRWLE 314
                 79******************96.58999998542.33368*********8443359999****99******986 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 4.7e-06
   PF14259.1   1 lyvrglppsvteedlreffspygk..........vegvriprnkdg..rgrgfAfvef.eseedAqkalkkln.lvlkgrti 68 
                 l++rglp+++t +d+ ++++ +              +++i+ + dg  r+ g+Afv + + +e+Aq a ++ n  +l+ r +
  MMETSP0890-20130614|7497_1 345 LRLRGLPFQATLSDVSRLVEAASEatryafqirePAKYSIFISGDGarRPIGEAFVLLqGGAEEAQTAAAAINgASLGDRVV 426
                 789******************77634454443443555555555534499********778889999999855588888865 PP

  == domain 5    score: 6.4 bits;  conditional E-value: 0.0017
   PF14259.1  25 vegvriprnkd.g.rgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                 +e++ ++r ++   r +g+A+ +f + +++  al+ +   l gr+++
  MMETSP0890-20130614|7497_1 484 LESIFFCRAPNsSwRATGDAYAKFYDDDAVILALALNRSELSGRFLE 530
                 5677777777654699*********************9******986 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.4e-08   6.3e-05       1      67 [.     243     311 ..     243     314 .. 0.87
   2 ?   -0.3   0.0      0.16   7.4e+02      50      69 ..     407     426 ..     384     427 .. 0.88
   3 ?    2.3   0.0     0.025   1.1e+02      37      69 ..     498     529 ..     483     530 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.4e-08
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES..TTSSEE-EEEEEESSHHH..HHHHHHHHTTEBETTE CS
  PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd..etgrskgfafVeFeseed..aekAlealngkklggr 67 
                 l V++Lp++++ + + ++F+++ +i ++  ++   ++ ++ g +fV F++  +  a+ ++e  ng+++ gr
  MMETSP0890-20130614|7497_1 243 LRVRGLPFEANRQMIVDFFQNI-SIDNVFFPNVrpSDSKPSGECFVAFDQGISfaAKMCIE-KNGQEISGR 311
                 679*******************.57799999999****************76532566777.******998 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.16
                 HHHHHHHHHHTTEBETTEBE CS
  PF00076.17  50 edaekAlealngkklggrel 69 
                 e+a+ A +a ng  lg+r++
  MMETSP0890-20130614|7497_1 407 EEAQTAAAAINGASLGDRVV 426
                 789999999******99986 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.025
                 SEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
  PF00076.17  37 rskgfafVeFeseedaekAlealngkklggrel 69 
                 r +g a+ +F + +++  Al+ ln  +l gr l
  MMETSP0890-20130614|7497_1 498 RATGDAYAKFYDDDAVILALA-LNRSELSGRFL 529
                 66788999*************.********976 PP

>> PF05918.6  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0      0.87     4e+03      24      50 ..     118     144 ..     117     145 .. 0.87
   2 !   15.1   1.6   1.2e-06    0.0056     507     554 ..     542     594 ..     479     596 .. 0.87

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 0.87
   PF05918.6  24 dyeeiiklskttikekqlasqlipryf 50 
                 dy+++++l k  +k++  as +++  f
  MMETSP0890-20130614|7497_1 118 DYRGVVRLKKLPSKAQTSASIIVSDIF 144
                 8*************9999998887766 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.2e-06
   PF05918.6 507 rvsndqkqlvnkssegiskvga..syrgrgrtrgrGrrs..GGGrGrGr.nrg 554
                     +q+q++  ++  is +g   s++g  r+ grG+r+  GGGrG+Gr +rg
  MMETSP0890-20130614|7497_1 542 NHTRTQEQISAIAAGAISDGGPplSHGGGARGGGRGGRGhgGGGRGGGRaGRG 594
                 4555799*************9999**999999999887666999999997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.85
# Mc/sec: 1742.29
//
Query:       MMETSP0890-20130614|7498_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 149.28
//
Query:       MMETSP0890-20130614|7501_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-11   41.5   0.4    5.2e-06   25.9   0.0    2.9  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.073   10.9   0.0      0.073   10.9   0.0    1.0  1  PF05804.7  Kinesin-associated protein (KAP)


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   2.2e-05      0.15      11      37 ..       4      29 ..       2      33 .. 0.67
   2 !   25.9   0.0   7.6e-10   5.2e-06       3      24 ..      36      57 ..      34      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
                CHHHHHHHHHHC.-SSHHHHHHHHHHHH CS
  PF00514.18 11 aGavppLvqLLk.sgdeevqeeAawALs 37
                +Ga++pLv +L+ +g e   e+Aa++L+
  MMETSP0890-20130614|7501_1  4 CGAIDPLVTMLNnNGRE--AEVAARTLW 29
                9***********53333..455555555 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 7.6e-10
                HHHHHHHHCHHHHHHHHHHC-S CS
  PF00514.18  3 enkqavieaGavppLvqLLksg 24
                +nk+a+++a+a+ppLv+LL+sg
  MMETSP0890-20130614|7501_1 36 DNKKAIVHANAIPPLVNLLSSG 57
                69*****************986 PP

>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.1e-05     0.073     333     418 ..       9      54 ..       2      60 .] 0.50

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.1e-05
   PF05804.7 333 kllkllpiehedllkvtlklllnlsfdtklrrkmvkaGllPklvslldddkkkgialkvlyhlslddkvksmfaytdcikllmkal 418
                  l+                                         +l ++ ++ ++a + l+++s d + k  + ++++i+ l++ l
  MMETSP0890-20130614|7501_1   9 PLVT----------------------------------------MLNNNGREAEVAARTLWKISRDGDNKKAIVHANAIPPLVNLL 54 
                 3333........................................333333445566666666666655555555666665555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 256.75
//
Query:       MMETSP0890-20130614|7499_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-22   78.2   0.7      1e-21   76.4   0.1    2.2  2  PF01556.13 DnaJ C terminal domain
    1.9e-21   75.4   0.2    3.6e-21   74.5   0.1    1.5  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.44     3e+03      35      49 ..     431     446 ..     405     454 .. 0.52
   2 !   76.4   0.1   1.5e-25     1e-21       1      80 [.     456     535 ..     456     536 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.44
  PF01556.13  35 pgtkpgekl.rikgkG 49 
                 pg  pg+++ ++k+k 
  MMETSP0890-20130614|7499_1 431 PGQIPGDVImTLKQKH 446
                 2333444433555555 PP

  == domain 2    score: 76.4 bits;  conditional E-value: 1.5e-25
  PF01556.13   1 dLiveleislkeAllGgtvevptldgrkikvkippgtkpgeklrikgkGmpkkknsnerGdLivkvnvkfPkklsseqke 80 
                 dL++++ i+lkeAllG+t ++++ld++ ++v+ +++tkp e+ rik++Gmp ++ ++e GdL+vk+  k+P  l++eqk+
  MMETSP0890-20130614|7499_1 456 DLHMDMVITLKEALLGFTKSFQHLDKHIVTVSQDKITKPAEVKRIKNEGMPVHNYPSEHGDLFVKFLFKMPVDLTTEQKN 535
                 9*************************************************************************999997 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.1   5.3e-25   3.6e-21       1      64 []     209     285 ..     209     285 .. 0.97

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 5.3e-25
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCC.............HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkdde.............eeaeekfkeineAyevLsdpekraeyd 64 
                 d+YeiLg++ da++++Ikk+Yrkl+lkyHPDk+k++                 e++++++n AyevL d+ekr  yd
  MMETSP0890-20130614|7499_1 209 DLYEILGIEDDADAKDIKKNYRKLSLKYHPDKCKGEVevldpkgeptgdmIPCEKMMNRVNLAYEVLGDEEKRILYD 285
                 79************************************************6689********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.95
# Mc/sec: 1372.23
//
Query:       MMETSP0890-20130614|7503_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.7   0.6       0.21   11.1   0.4    1.3  1  PF09013.5 YopH, N-terminal


Domain annotation for each model (and alignments):
>> PF09013.5  YopH, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   1.5e-05      0.21      29     120 ..      71     163 ..      64     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.5e-05
   PF09013.5  29 vaankeetfqgltvtsgiresekafaqevLehvknvvLnreDv..akLlksavkfrlsnfeLrsvk.ngesilvgLrsdqlsLkDaklLLeaalr 120
                 + a+ e +   +  +++ ++se    ++v  h ++ +++r D+  a  +  ++k    n  Lr+ k ++ +  +++r  q  LkDa+ L+ aa r
  MMETSP0890-20130614|7503_1  71 IVAKIELASGSTVLSQAKNDSEPLDRDDVALHLADAAIKRRDLesALSHLDSIKDPKTNSILRDWKlDATTAATAIREKQ--LKDARALILAAAR 163
                 5555566666666778888889999999*************983233455789**********99934567789999999..59***99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 736.34
//
Query:       MMETSP0890-20130614|7504_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-122  408.4   0.5   1.6e-122  408.1   0.4    1.1  1  PF00883.16 Cytosol aminopeptidase family, catalytic domain
    1.7e-10   40.6   3.7    1.7e-10   40.6   0.5    2.4  3  PF02789.12 Cytosol aminopeptidase family, N-terminal domain
     0.0036   17.1   0.1     0.0098   15.7   0.0    1.7  1  PF00258.20 Flavodoxin


Domain annotation for each model (and alignments):
>> PF00883.16  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.1   0.4  3.6e-126  1.6e-122       3     310 ..     241     553 ..     239     554 .. 0.96

  Alignments for each domain:
  == domain 1    score: 408.1 bits;  conditional E-value: 3.6e-126
                 HHHHHHHS-TTTS-HHHHHHHHHHHHHHH-..EEEEEEEHHHHHHTT---HHHHH---...-S--EEEEEEE----.TS--..EEEE-----EE--------ST..TGGGGGG-----HHHHHHHHHHHHTT-S.S-EE--EEE-EE-----------EEE-----EEE-S-TT----HHHHHHHHHHGG.G--SEEEEEE-----HHHH-----B-EEES-HHHHHHHHHHHHH----BEEE---HHHHHHHH-SSSSEE-----S----HHHHHHHHTT---.S..EEEEE-------SSSST--------HHHHH CS
  PF00883.16   3 larelvntPaniltpaelaeeakklaekas..vkvevldeeeleelgmgallaVakgs...eneprlvvleykgkk.seekkklaLvGKgitfDsGGlsiKpaa..smeemkaDmgGaaavlgalkalaklkle.vnvvavvalteNlisgkaqkpgdvltalnGktvevnNTDAEGRLvLaDalvyake.lkaeaiidvaTLTGavvvalgeeitgifsnsdelakelikaaeesgekvwrlpleeeykkqlkskvAdlaNigkaegagaitAalFlkefveekevkwlHlDiagtaekekkkaskgatGvgvrtlv 310
                 lar++vn+Pan++tp++la +a +la+++   +++++ld +e+e+++mga+l+Vakgs   ++e+++++l+y g++ ++++++la++GKg+t+DsGG++iKp+a   +e+mk+DmgG+aavlg++k la++kl+  +v+++va++eN+i+++a++pgd+lta+nG+t+ev NTDAEGRL+LaDal+ya++  k++ai+d+aTLTGa+++alge+++g+f+++d+la el++aa+++gek+wr+ple ey +qlksk+Adl+N+g++   g+itAalFlkefv++ + +w+H+Diag+++ +k      atG+gv+tlv
  MMETSP0890-20130614|7504_1 241 LARDVVNAPANVVTPKSLAGVALDLAQAYPhlLSCKILDAQECEKRKMGAYLGVAKGSapeSSEAQFIHLTYTGPSsKDTSTTLAMIGKGLTYDSGGYNIKPSAggMIEKMKFDMGGSAAVLGTAKSLAEMKLKdCTVHFIVAACENMIGPHAMRPGDILTASNGRTIEVINTDAEGRLTLADALIYAESeCKPDAIVDLATLTGAMIIALGEKCAGLFTPNDDLATELTDAAHSAGEKLWRMPLETEYSDQLKSKIADLKNVGGRPA-GSITAALFLKEFVSK-DLPWAHMDIAGPVWDTKDD---TATGYGVKTLV 553
                 89***************************999**************************7767899*********995666789******************7662269*************************989*****************************************************99****************************************************************************6.***************.589***********88885...9********97 PP

>> PF02789.12  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.5   3.8e-14   1.7e-10      11     123 ..     101     201 ..      97     203 .. 0.90
   2 ?   -1.1   0.0       0.3   1.4e+03      97     114 ..     224     242 ..     212     246 .. 0.75
   3 ?   -3.2   0.0       1.4   6.2e+03      37      66 ..     433     459 ..     407     479 .. 0.61

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 3.8e-14
  PF02789.12  11 tpaaekldaaldgklsellkeggfsgkagevlllpslggekakrvllvGLGkeeeltaealrkaagaaaralkklkvatvavelpegknsaevaeaaaegallgaYrfdryks 123
                  + a+++daa++g++sel+++++f+gkag++ +l+ +      r++l+GLG++   +++a+ k +    +a k++ +   + +l       ++ e++ +++  ++Y ++r+++
  MMETSP0890-20130614|7504_1 101 DEYAQSVDAATEGAVSELVAAEEFKGKAGSSAVLRLPKL----RIALFGLGDK--ASSAAIGKYITDMSKAHKANVIGIGGSSLG------DDYEKLYTACFEASYVDNRFRT 201
                 567899*****************************9886....9*******98..569999999999999888888888888888......********************98 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.3
  PF02789.12  97 gknsa.evaeaaaegallg 114
                 ++n+a ++a+a+a g+ l+
  MMETSP0890-20130614|7504_1 224 EENAAlSTAHAIACGVGLA 242
                 44555899*******9997 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.4
  PF02789.12  37 kagevlllpslggekakrvllvGLGkeee..l 66 
                 k++ ++ l +l g      +++ LG++++  +
  MMETSP0890-20130614|7504_1 433 KPDAIVDLATLTGA-----MIIALGEKCAglF 459
                 55555555555553.....6667777776552 PP

>> PF00258.20  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.2e-06    0.0098      83     127 ..     134     176 ..      90     193 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.2e-06
                 SCGTT-EEEEEECCHTTSSTTTTTHHHHHHHHHHCCEEEESE-EE CS
  PF00258.20  83 gdlsnvrfavfglGdsaypkFcaagkaldekleelGaerllelle 127
                   l ++r+a+fglGd+a     a+gk++ ++ ++  a++++ ++ 
  MMETSP0890-20130614|7504_1 134 LRLPKLRIALFGLGDKASSA--AIGKYITDMSKAHKANVIGIGGS 176
                 46899***************..******************95443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.59
# Mc/sec: 2254.20
//
Query:       MMETSP0890-20130614|7508_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   15.1   1.1       0.09   13.0   0.8    2.2  1  PF12796.2 Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   6.6e-06      0.09      11      80 ..      87     176 ..      13     183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.6e-06
   PF12796.2  11 elvklLlekgadvdl........get.....pLhlAaeagnleivklLle...........agadvnakdkegntpLhlAvrnghlelvklLle 80 
                 +++k+L++++   d         ++t      +h Aa+++ ++++++Ll+           + a+     +  +  + +A+  ++  +v++ l 
  MMETSP0890-20130614|7508_1  87 HCLKILHDAKEIDDAisaagiaeRDThdnyaIIHFAARSNLFDALQCLLDfaspetrrraiRSANK----QVTYATIAHACLVNNPHMVDYCLA 176
                 677888875543343456666663446668899999999999999999996666665333322222....344566777888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.76
# Mc/sec: 1236.02
//
Query:       MMETSP0890-20130614|7509_1  [L=953]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.41u 0.41s 00:00:01.81 Elapsed: 00:00:01.15
# Mc/sec: 1968.73
//
Query:       MMETSP0890-20130614|7510_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-19   68.9   0.0    5.8e-19   68.3   0.0    1.2  1  PF07209.7  Protein of unknown function (DUF1415)
    4.9e-11   42.8   6.0    1.2e-10   41.6   4.2    1.7  1  PF03692.10 Flagellin N-methylase


Domain annotation for each model (and alignments):
>> PF07209.7  Protein of unknown function (DUF1415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   8.4e-23   5.8e-19       4     163 ..     167     318 ..     164     328 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 8.4e-23
   PF07209.7   4 viaetrqWleevviglnlCPFAkkevekkqiryvvseaekeeelleelleelelleeeeeeeieTtllvlpelledFldyldlldladalleelglegvlQlasfHPdyqFegteaddaenytNRsPyPilHllReesleralaaypdpeeIperNiell 163
                 + ++t++W++ ++ ++ lCP+A++ +++++ r+v++++    ++ e+l+  l++l+ee + + e  ++++  l+++ +++ ++  + d+ lee  l++  Q+a fHP++ ++g +++d  ++  RsP+P++ ++Re+ l++a +    + +I ++N+++l
  MMETSP0890-20130614|7510_1 167 ALKATEKWIQ-LIAEIGLCPWAQSAIDQGACRFVIASS--LLDIRETLKIVLTELHEEYSPSHEPIVFLV-FLFSNDTNFSSFYSMLDD-LEEFALQDNAQIAGFHPEWLYAGLDPKDPLHFEKRSPFPTISVVRESALKNAQHV---TTRIADDNLRIL 318
                 5689*****6.899******************998654..677777777788888777666666443333.345555555555555555.68899*****************************************999877443...456777777666 PP

>> PF03692.10  Flagellin N-methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   4.2   1.7e-14   1.2e-10       1      85 []      37     129 ..      37     129 .. 0.69

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 1.7e-14
  PF03692.10   1 eCkeCgaCCk.........elkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetklCkiYeeRpkicrlfpas...ekeellaraetCa 85 
                 eC++Cg+CC+         ++  +l++e+ + l a         +++ +++ ++C +l+ee+ +C+i++ Rp+ c ++p++    k+e ++ +e C+
  MMETSP0890-20130614|7510_1  37 ECTGCGECCTvegevwfdkDEATQLNAEEKKGLDALI---LPSGHRRSRRSAEKCYYLNEEN-RCSIHNVRPQQCAAYPFWpriLKSEQNWQQEPCE 129
                 6*********655444433222333333322222222...2333344444999********6.******************9998889999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1463.49
//
Query:       MMETSP0890-20130614|7511_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-15   56.0   0.0    4.8e-15   55.5   0.0    1.2  1  PF03099.14 Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> PF03099.14  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.5e-19   4.8e-15      23     125 .]      49     144 ..      40     144 .. 0.92

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.5e-19
                 EEESEB-----EEEB-TTBBEEEEEEE-TSS.HCCCCGGGHHHHHHHHHHHHH.EEE........CCTCGG--EETTTEEEETTEEEE--EEEEET....CEEEE-SS-B CS
  PF03099.14  23 vvarrqtgGrrvwhspggnlaysllllpelksfklsdleayvlllvlavlealgelg.......pgetgipvkikwpnDllvngkKiaGilvesrrgatlhhltlgvgin 125
                  ++r ++gG +++h+pg+ +ay++l+l++      +d ++y++ l+  v+++++elg       ++ tg++++          g Kia+++v  rr++t+h+l+l+v+ +
  MMETSP0890-20130614|7511_1  49 RLVRVERGGDVTYHGPGQLVAYPVLHLSQY---R-RDSHWYLRALEEVVIRTCAELGlpdairhTEHTGVWLR----------GNKIAAVGVALRRWVTFHGLALNVNPD 144
                 589************************554...5.778***999999999999988888889999*******9..........************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.59
# Mc/sec: 877.31
//
Query:       MMETSP0890-20130614|7514_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.45s 00:00:01.18 Elapsed: 00:00:00.70
# Mc/sec: 1496.01
//
Query:       MMETSP0890-20130614|7520_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    7.1  15.0        1.1    8.6   8.7    1.5  1  PF13441.1 YMGG-like Gly-zipper
        7.6    6.7  10.2         11    6.1   7.1    1.4  1  PF11759.3 Keratin-associated matrix
          9    6.3  13.0         16    5.5   9.0    1.5  1  PF10439.4 Bacteriocin class II with double-glycine leader peptide


Domain annotation for each model (and alignments):
>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.7   0.00024       1.1       8      43 ..       6      40 ..       3      42 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00024
                XXXXXXXXXXXXXXXXXX---------------TTH CS
   PF13441.1  8 aiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                a+G ++G a G  +G  g+G++ G++ Ga +G  +g
  MMETSP0890-20130614|7520_1  6 AVGFGTGIAEGPGVG-SGTGTLDGTTLGAGVGHGIG 40
                899999999999999.99**************9999 PP

>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.1    0.0025        11      12      57 ..       8      45 ..       2      58 .] 0.41

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0025
   PF11759.3 12 gygsggyGglGcgygCgygsirrlGyGsg...fggyGsGsGYG.GyGygc 57
                g+g             g     ++G G+g   +++ G G+G+G G  +g 
  MMETSP0890-20130614|7520_1  8 GFGT------------GIAEGPGVGSGTGtldGTTLGAGVGHGiGKLDGI 45
                2222............2221122222222434455555555554443333 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.0    0.0036        16      27      64 ..       7      44 ..       4      57 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0036
   PF10439.4 27 agigggaaaGalaGaatggavGglaGAlvGavvGaigg 64
                 g g+g+a G ++G +tg+  G+  GA vG  +G + g
  MMETSP0890-20130614|7520_1  7 VGFGTGIAEGPGVGSGTGTLDGTTLGAGVGHGIGKLDG 44
                57899999999999999999777777777776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 198.56
//
Query:       MMETSP0890-20130614|7519_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-15   54.4   0.0    7.8e-15   53.9   0.0    1.2  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   5.7e-19   7.8e-15       3      66 ..      11      80 ..       9      82 .. 0.91

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 5.7e-19
                HHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE........EE.EEEEEGGGEEEE CS
  PF01423.17  3 lqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknk......relgqiliRGenivlv 66
                l ++++k+V + l++gr ++G++++fD+f NlvL+++ e++   +           lg++++RG++++l+
  MMETSP0890-20130614|7519_1 11 LVDQLDKKVMILLRDGRHLVGIMRSFDQFSNLVLEETFERRVVVSASGtshygdIPLGLYVVRGDAVILL 80
                66889***********************************776666669999***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.65
# Mc/sec: 446.09
//
Query:       MMETSP0890-20130614|7518_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-15   57.0   0.0    2.2e-14   53.3   0.0    2.6  1  PF07540.6  Nucleolar complex-associated protein
    2.1e-05   23.9   0.9    0.00014   21.2   0.2    2.5  3  PF03914.12 CBF/Mak21 family
     0.0042   17.2   6.5       0.28   11.3   0.4    3.9  3  PF13646.1  HEAT repeats
  ------ inclusion threshold ------
       0.11   11.1   1.7       0.11   11.2   0.2    1.6  2  PF07923.8  N1221-like protein


Domain annotation for each model (and alignments):
>> PF07540.6  Nucleolar complex-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   6.4e-18   2.2e-14       5      95 .]       2     104 ..       1     104 [. 0.91

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 6.4e-18
   PF07540.6   5 keeiaelasklledPeenikalkellklveek............anvavkklallsllevfkdiiPgYrirplteeekkekvskevkklrefeqsLlsnYkky 95 
                 + +ia+l++ +  dPe+ +k++ +  +  e++             +++ + la++s  +vf di+P+Yr+r  t  e+++++ ke+ ++r++e++Ll +Y++y
  MMETSP0890-20130614|7518_1   2 RRKIASLCEGITRDPEAALKRIPDTESAKESEssmnkllglmrdPQISLRSLAIVSGAAVFCDILPNYRLRTRTAIEREQRLGKETFATRKHEEALLVSYQSY 104
                 568999999999999999999888877777777788888888777999*****************************************************99 PP

>> PF03914.12  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.8   2.7e+03      62      70 ..     182     190 ..     143     256 .. 0.70
   2 !   21.2   0.2     4e-08   0.00014      26     100 ..     381     458 ..     362     461 .. 0.84
   3 ?   -0.6   0.0       0.2   6.9e+02     146     161 ..     464     479 ..     461     482 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.8
  PF03914.12  62 krvaaFvKR 70 
                 + v+a++KR
  MMETSP0890-20130614|7518_1 182 RAVQAIIKR 190
                 333333333 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 4e-08
  PF03914.12  26 aLYrllldpellnssdkse...llLrlldkal.ksdnlpvkrvaaFvKRllqvalqtppkfalgiLallskllkrypsl 100
                 aLY  ll+  ++++ +k++     Lr++++++  s++ + +r+ aF++R + +a  ++p++a  +Lal   l+ ryp++
  MMETSP0890-20130614|7518_1 381 ALYGTLLSCTSIAAIKKDSlfeNTLRAIHQSFlDSRS-SDNRALAFARRAIALAGYAQPDIARVFLALAMALFIRYPAI 458
                 788888755555555455534457********77877.9**************************************87 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.2
  PF03914.12 146 WElelLskhyhpsvak 161
                 +E  +Ls+h+ p++++
  MMETSP0890-20130614|7518_1 464 YEALTLSQHFDPDIRR 479
                 8999********9986 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.067   2.3e+02      28      53 ..      31      56 ..       3      61 .. 0.77
   2 !   11.3   0.4   8.3e-05      0.28      20      57 ..     116     166 ..     102     203 .. 0.61
   3 ?    4.5   0.1     0.011        37      20      52 ..     311     352 ..     304     379 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.067
   PF13646.1 28 gseealpaLlelLkdsdpevRraAae 53
                +se+++++Ll l++d+  ++R  A+ 
  MMETSP0890-20130614|7518_1 31 ESESSMNKLLGLMRDPQISLRSLAIV 56
                45677999999999999999988875 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.3e-05
   PF13646.1  20 aieaLg............qlg.seealpaLlelLkdsdpevRraAaeaLgk 57 
                 a+ aL+            +++ +e++++aL+e L+ sd+  R++A+ a+ +
  MMETSP0890-20130614|7518_1 116 ALSALAtrcfgqlwlerpRFNlNERVIQALTESLDASDEQARIEAVTAIRQ 166
                 3334443333355333332211447899999999999999**999999974 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.011
   PF13646.1  20 aieaLgqlgse.......ealpaLlelLkds..dpevRraAa 52 
                 a+++L ++ ++       +al++++ +++d+  d+ +R+a+ 
  MMETSP0890-20130614|7518_1 311 ALRCLDRISHAvdpdllaDALKMIINAAQDDsqDAVIRIACF 352
                 666666666655566666677777777755411345555554 PP

>> PF07923.8  N1221-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   3.1e-05      0.11      48     140 ..     127     222 ..      93     236 .. 0.70
   2 ?   -3.7   0.0       1.1   3.6e+03      44      71 ..     266     293 ..     255     302 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.1e-05
   PF07923.8  48 ksWtea.deeqrkkfveklvdeLeetdkekrlkaleallYialGtwaeta......skeeqlksikrNvklLvevgglealvelLnkaiekaaasdsaas 140
                 + W e  +++ ++  ++ l ++L+++d+++r++a+ a   i +G+  ++       + + ++++ikrN++ L ++ +lea+ ++L+    ++ a+ ++ +
  MMETSP0890-20130614|7518_1 127 QLWLERpRFNLNERVIQALTESLDASDEQARIEAVTA---IRQGVNRDKIgeatllAVRAVQAIIKRNNRKLKSSATLEAF-DTLKVYSVDTEACADRIA 222
                 5555441455677777777888888887777666666...68*******99999*999****************8888776.555555555555555333 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.1
   PF07923.8  44 feedksWteadeeqrkkfveklvdeLee 71 
                  + + +W+++++    +f++ l + L++
  MMETSP0890-20130614|7518_1 266 AVDKLEWQQSQRRITHEFATLLARVLDM 293
                 4445788888888888888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:01.32
# Mc/sec: 965.80
//
Query:       MMETSP0890-20130614|7516_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-31  107.6   0.2    7.5e-31  106.9   0.1    1.4  1  PF04192.7  Utp21 specific WD40 associated putative domain
    1.5e-13   49.9  14.5    0.00079   19.1   0.1    7.8  8  PF00400.27 WD domain, G-beta repeat
    7.1e-05   21.0   1.8     0.0016   16.6   0.1    3.3  4  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF04192.7  Utp21 specific WD40 associated putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.1   1.6e-34   7.5e-31      26     227 ..     702     898 ..     656     900 .] 0.86

  Alignments for each domain:
  == domain 1    score: 106.9 bits;  conditional E-value: 1.6e-34
   PF04192.7  26 seelvTLsllpksrwqtLlhLdvIkeRnkpkeapkkpekAPFFLp.tlaklddea...ateaeseekkekeseasrlaklkrsakleqeseFtklLregsesndyeefleyLkslspskiDleirsLn..peskepleelvaFikaltarLkskkdFeLvqaylavflklHgdviveeeeeeelrealeelkeeqeeekerldelvky 227
                 s++ v Ls  p+ r +tL  L+ I eRn+p e+pkkpe+APFFLp ++ +  +e+    ++ e++++++ +s+++r++        ++e +   +L + +   +  ++leyL+slsp ++D +i  L   ++++ ++++l a +k + + L+s++dFe vqayl   l+ H+ v+ +++    l + l e+k++q +  +r+++l+++
  MMETSP0890-20130614|7516_1 702 SRSVVKLSGQPRGRAETLHALEAISERNRPVEPPKKPENAPFFLPsSMPTFVEEQvslPQDLEEDNHETPNSKRRRIE--------SFEGAHRCRLATVALGTETGPVLEYLNSLSPPAVDADILLLCrgFDDEPGIDNLAALLKHMLNALNSRHDFEAVQAYLHRILQHHAPVLFASSR---LDNLLCEIKQAQTRATNRIRQLFNE 898
                 678999***************************************777777766622222222222233333333333........36677778888888888999******************999877889***********************************************...**********************987 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.3e-05     0.058      23      39 .]     111     127 ..      95     127 .. 0.78
   2 ?    0.3   0.0      0.14   6.5e+02       9      38 ..     140     178 ..     137     179 .. 0.82
   3 ?   -2.2   0.0       0.9   4.1e+03      25      37 ..     224     237 ..     217     237 .. 0.87
   4 !    6.8   0.1    0.0013       5.7      15      36 ..     353     374 ..     350     377 .. 0.92
   5 !   19.1   0.1   1.7e-07   0.00079       8      39 .]     456     487 ..     450     487 .. 0.92
   6 ?    3.6   0.0     0.013        59      23      39 .]     510     526 ..     496     526 .. 0.86
   7 !    4.5   0.0    0.0069        31      18      39 .]     563     585 ..     549     585 .. 0.77
   8 !    4.6   0.0    0.0062        28      15      38 ..     602     626 ..     598     627 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
                 STEEEEEETTSEEEEEE CS
  PF00400.27  23 gpllasgSrDgtirlWd 39 
                  p+l+sg++Dg+ir W+
  MMETSP0890-20130614|7516_1 111 LPVLVSGGSDGKIRFWN 127
                 689*************7 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.14
                 SSSSSEEEEEEESS.........STEEEEEETTSEEEEE CS
  PF00400.27   9 gHtspVtcvafspd.........gpllasgSrDgtirlW 38 
                 +H + V ++a+  d          +l+ s ++D+ +  W
  MMETSP0890-20130614|7516_1 140 HHGHRVLALAVGGDgaaqlgsheACLVTSVGADNAVVQW 178
                 5777888888888888888888899999*****999888 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.9
                 EEEEEE.TTSEEEE CS
  PF00400.27  25 llasgS.rDgtirl 37 
                  l+++S  D++irl
  MMETSP0890-20130614|7516_1 224 QLLTASpLDRSIRL 237
                 58999999****97 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0013
                 EEEEEESSSTEEEEEETTSEEE CS
  PF00400.27  15 tcvafspdgpllasgSrDgtir 36 
                 t++++sp g++ + g +Dg +r
  MMETSP0890-20130614|7516_1 353 TSCCISPCGNFAIVGHADGRCR 374
                 89*****************998 PP

  == domain 5    score: 19.1 bits;  conditional E-value: 1.7e-07
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                 r H+++Vt + ++ d+++l+s++ Dg+++ W+
  MMETSP0890-20130614|7516_1 456 RKHQGAVTGLTVAADCSFLLSAGLDGKLKWWH 487
                 67*****************************6 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.013
                 STEEEEEETTSEEEEEE CS
  PF00400.27  23 gpllasgSrDgtirlWd 39 
                 g l+a +++Dg+ir+ d
  MMETSP0890-20130614|7516_1 510 GDLVALACDDGNIRIVD 526
                 568999********976 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.0069
                 EEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  18 afspd.gpllasgSrDgtirlWd 39 
                 af ++  + l   +++g++r+Wd
  MMETSP0890-20130614|7516_1 563 AFGQPlHRTLYAVCANGSLRVWD 585
                 444446778999999*******9 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.0062
                 EEEEEESSSTEEEEEE.TTSEEEEE CS
  PF00400.27  15 tcvafspdgpllasgS.rDgtirlW 38 
                 t+va sp+g +la+   +D+ + lW
  MMETSP0890-20130614|7516_1 602 TSVAASPTGEFLATTHvDDSAVSLW 626
                 89************99888888888 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.061   2.8e+02     239     253 ..     119     133 ..     113     147 .. 0.89
   2 ?    1.3   0.0     0.015        68     203     251 ..     445     491 ..     418     496 .. 0.73
   3 !   16.6   0.1   3.4e-07    0.0016     234     261 ..     572     612 ..     496     674 .. 0.77
   4 ?   -3.3   0.0      0.37   1.7e+03     124     155 ..     761     793 ..     749     798 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.061
   PF11715.3 239 rDgkLRvWnletgqc 253
                  Dgk+R Wnl ++++
  MMETSP0890-20130614|7516_1 119 SDGKIRFWNLQNRAL 133
                 59**********998 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.015
   PF11715.3 203 llgfk..yrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletg 251
                 +l  +    ++r+  +a++ l+v      + +f+++  +DgkL+ W  +t+
  MMETSP0890-20130614|7516_1 445 YLAHQrsVTRRRKHQGAVTGLTVAA----DCSFLLSAGLDGKLKWWHFATH 491
                 3333345667789999999999999....99***************88876 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 3.4e-07
   PF11715.3 234 vftlsrDgkLRvWnletgqclrttdil.............e 261
                 +++++++g LRvW+l+t++++ +   +              
  MMETSP0890-20130614|7516_1 572 LYAVCANGSLRVWDLATAALIDHASFRseatsvaasptgeF 612
                 89******************554444454444444444440 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 0.37
   PF11715.3 124 adatedniedw.cksyvpssfsgrkppllvavt 155
                 +d++edn e++ +k + ++sf+g ++ +l++v+
  MMETSP0890-20130614|7516_1 761 QDLEEDNHETPnSKRRRIESFEGAHRCRLATVA 793
                 78888888888568899***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.21u 0.43s 00:00:01.64 Elapsed: 00:00:01.42
# Mc/sec: 1518.82
//
Query:       MMETSP0890-20130614|7522_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   11.9   0.0       0.16   11.1   0.0    1.3  1  PF10681.4 Chaperone for protein-folding within the ER, fungal


Domain annotation for each model (and alignments):
>> PF10681.4  Chaperone for protein-folding within the ER, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.2e-05      0.16      76     135 ..     166     225 ..     156     239 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.2e-05
   PF10681.4  76 sngslvLtpiavdGrqllsdpCadekstytrYnqtetfkkfevsvDsyhgvakLelyqfd 135
                 ++g l L+pia  G + + d  + +k+ ++ +++++tf   ++  Ds h++  L+l   d
  MMETSP0890-20130614|7522_1 166 AKGLLFLQPIAFIGSRSFDDDKNYKKASVALFQNSHTFPPRTIFYDSQHERIDLTLSIHD 225
                 5799************************************************99997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:01.19
# Mc/sec: 577.94
//
Query:       MMETSP0890-20130614|7523_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   66.7   0.0    2.6e-18   66.2   0.0    1.3  1  PF01189.12 NOL1/NOP2/sun family
    0.00018   21.9   0.0     0.0005   20.5   0.0    1.9  1  PF12847.2  Methyltransferase domain
    0.00072   19.4   0.0     0.0022   17.9   0.0    1.9  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   14.8   0.2       0.42   10.8   0.1    2.7  1  PF13649.1  Methyltransferase domain
      0.028   14.2   0.0      0.047   13.5   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01189.12  NOL1/NOP2/sun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   9.5e-22   2.6e-18      59     239 ..     168     342 ..     111     392 .. 0.71

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 9.5e-22
                 --------EEE--TTT---HHHH------E....EEEES------HHHHHHH-T..T-EEEEE-SSCCCHHHHHHHHHH-----EEE-..-----GGGT-----BSEEEEE--------TTT-TTHHHH--TTHHHHHHHHHHHHHHHHGGGB....-----EEEEES---TTTTHHHHHHHHHH-T CS
  PF01189.12  59 LpefengavvvqdassqldaiaLapqedel....ilDlcaapgGKtthiaelmkn.egevvAvdrnkqrlkrvaanqqrlGvfnitvve.edatqaaqkllgsefdrilldaPcsgtgvirrepkikwlrreadiaqlaelqkelLkaaidlvgidtkeggvlvYstCsvlveeneagiklflqkrp 239
                 L  +  g+ ++qd+ss ++a aL  +   +    ilD caapg K th+a+l k  +++v+A dr++qr + +++ +       ++     d    ++  +++ + ++lld  csg g  +    +++l +++  a+la  q  +L    +       +   +vYstCs++  ene++i+ +lq+++
  MMETSP0890-20130614|7523_1 168 L--VTCGHLILQDKSSCFPALALIGEK--WsggdILDCCAAPGNKSTHLAALIKGsKSRVIALDRDPQRFDVLKQRIIEARASDTIETRlFDCLALEPHHIPN-VTAVLLDPSCSGSGIPGSS--ARTL-KSERLAALASFQLTALTKFLTCF----PAVDKVVYSTCSIHHVENEQVIAKALQATQ 342
                 4..5669************98886555..555**********************99********************988887777777677999999999999.*************865554..4555.44566788888888887777666....66689**********************985 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.8e-07    0.0005       2      78 ..     195     274 ..     194     350 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.8e-07
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgak..vvgvDpseeslelarenaksldleeriellqgda.keelsllerfDavllkg 78 
                 g+ ilD ++  G+ s  la l +g+k  v+++D++++ ++++++++ +++ ++ ie +  d+   e+   +++ avll+ 
  MMETSP0890-20130614|7523_1 195 GGDILDCCAAPGNKSTHLAALIKGSKsrVIALDRDPQRFDVLKQRIIEARASDTIETRLFDClALEPHHIPNVTAVLLDP 274
                 567*********9999999955555555******************9999999999888888778888888888888766 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     8e-07    0.0022       3      83 ..     197     279 ..     195     398 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 8e-07
   PF13659.1   3 rvldpgcGsGtfllaalell...aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpr 83 
                  +ld ++  G+  +++++l    ++++++++ dp++ ++ ++++ +a+++++++ r  d ++l+ +   + +++v+ +p   ++
  MMETSP0890-20130614|7523_1 197 DILDCCAAPGNKSTHLAALIkgsKSRVIALDRDPQRFDVLKQRIIEARASDTIETRLFDCLALE-PHHIPNVTAVLLDPSCSGS 279
                 68999******888888885559**************************99*****99999998.6677889999988877443 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015      0.42       1      64 [.     198     262 ..     198     372 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpfe 64 
                 ild +  +G+    l+    kg+++rvi++D ++++++  k+r+ +  +  +++    d+ al+ +
  MMETSP0890-20130614|7523_1 198 ILDCCAAPGNKSTHLAALI-KGSKSRVIALDRDPQRFDVLKQRIIEARAsdTIETRLFDCLALEPH 262
                 79*******9999998665.7888*************98885553332233333333444444332 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.047      23     164 ..     194     353 ..     163     362 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
  PF01728.14  23 kgktvvDlgaaPGgwsqvllqrl.geagkvvavDlqpmaplqgvttlqgditdpstqekilealeege.........rkvdlvlsDgapdvtgvhdld.eyislqlilaalklalellk............pggnfvlklfkgeea.eellkqlrkfFekvsvvkp 164
                 +g  ++D +aaPG  s  l+  + g +++v+a+D  p     + + l++ i +++  + i+++l   +          +v  vl D + + +g+   +   ++++ + a  ++ l+ l                ++ +  +++e+  +++l++++  Fe v++  +
  MMETSP0890-20130614|7523_1 194 SGGDILDCCAAPGNKSTHLAALIkGSKSRVIALDRDPQ----RFDVLKQRIIEARASDTIETRLF--DclalephhiPNVTAVLLDPSCSGSGIPGSSaRTLKSERLAALASFQLTALTkfltcfpavdkvVYSTCSIHHVENEQViAKALQATQGTFELVHCLPS 353
                 55779***********99999888899*******9965....99999999988866665555543..223455677799999999988777887666634444444444334655555533334433333322223333333555523666666667777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.41s 00:00:01.25 Elapsed: 00:00:00.85
# Mc/sec: 1375.79
//
Query:       MMETSP0890-20130614|7524_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.0   3.0       0.19   11.5   2.1    1.2  1  PF14442.1  N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.1   1.4e-05      0.19      91     115 ..       6      30 ..       3      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
   PF14442.1  91 aldlradddgaaasarasddddddd 115
                 +l+++++dd++ a +ra+dddddd+
  MMETSP0890-20130614|7524_1   6 YLKVEEEDDDEKAIKRADDDDDDDE 30 
                 68999********999998888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.80
# Mc/sec: 515.22
//
Query:       MMETSP0890-20130614|7526_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-23   81.2  14.6    6.5e-23   80.8  10.1    1.1  1  PF03357.16 Snf7
    1.7e-05   24.1   3.5    3.2e-05   23.2   2.4    1.5  1  PF03398.9  Regulator of Vps4 activity in the MVB pathway
  ------ inclusion threshold ------
       0.04   13.8   1.9      0.055   13.3   1.3    1.2  1  PF13462.1  Thioredoxin
      0.069   12.9   1.3       0.16   11.7   0.9    1.7  1  PF04212.13 MIT (microtubule interacting and transport) domain
        1.1    9.2   9.0        1.8    8.5   0.1    2.4  2  PF08702.5  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8  10.1   2.4e-26   6.5e-23       5     158 ..      13     168 ..      10     196 .. 0.93

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 2.4e-26
  PF03357.16   5 sLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda..deedEeeldaeLdaLeqelgdeel 158
                 +L+ + r++   ++++ek     ++++kk+++kgn++ A++++ + +r ++q+ ++ ++ +++++va ++e+a +++++ +am +++k m ++ k md++ki k+md +e+q+e++d     +++s++    ++  E+ +d +++++++e + + +
  MMETSP0890-20130614|7526_1  13 NLKITSRQMTSASKKCEKGARTAKNQVKKAIEKGNMEGARIYAQNAIREKNQALNYLRMASRIDAVAQRLETAIRTNDMSKAMGNVVKGMSSALKSMDVEKISKTMDAFEKQFEDMDVRAGYMENSMNAStaSATPEDQVDSLISEVADEHQLDLS 168
                 6888999************************************************************************************************************************998999*****************887775 PP

>> PF03398.9  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   2.4   1.2e-08   3.2e-05       3     163 ..      13     165 ..      11     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.2e-08
   PF03398.9   3 qlklaisRlkllqnkkealvkqarrevaqlLelgkeesAriRveqvireditlelleilelycelllarvsllekskecpeelkeAvasiiyAaprltevkELqeirkllvekyGkefaeaavenreegVnekvvekLsvktpseelvekylkeIAkeynv 163
                 +lk++  ++  + +k e+ +++a+++v + +e+g+ e Ari +++ ire+++   +  +   ++ +++r+++  +++++ +++ + v+++  A +   +v+ +++  + +++++ +    + v     g  e+ ++   +++ +e++v+ +++e+A e+++
  MMETSP0890-20130614|7526_1  13 NLKITSRQMTSASKKCEKGARTAKNQVKKAIEKGNMEGARIYAQNAIREKNQALNYLRMASRIDAVAQRLETAIRTNDMSKAMGNVVKGMSSALKS-MDVEKISKTMDAFEKQFED----MDVR---AGYMENSMNASTASATPEDQVDSLISEVADEHQL 165
                 799999999999***************************************************************999999999999999888888.4776666666666655533....3332...2333444455555666677788888888888776 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3     2e-05     0.055      27     133 ..      27     144 ..      22     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2e-05
   PF13462.1  27 hCarfheevekllekyidtg..kvkfiyrefpldkegslkaamaarcageqseffllikallysqqeewaeseela....ae...algk....deefeacledeklqalveadseeakaa 133
                  C +   + + +++k+i++g     +iy + +  +++  +a++++r a + ++  +  +++++++++  a ++ ++    a+   +++k    +++fe+ +ed +++a  +++s +a +a
  MMETSP0890-20130614|7526_1  27 KCEKGARTAKNQVKKAIEKGnmEGARIYAQNAIREKN--QALNYLRMASRIDAVAQRLETAIRTNDMSKAMGNVVKgmssALksmDVEKisktMDAFEKQFEDMDVRAGYMENSMNASTA 144
                 6999999999999999****55557999999888777..888999999888878899999999999998888544433222234433332224677777777777777776666665443 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9     6e-05      0.16       4      58 ..      34      85 ..      31      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6e-05
                HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHH CS
  PF04212.13  4 kAlelikkAveaDeagkyeeAlelYkeAlelLlqalkyepnperrealrqkieey 58
                 A+ ++kkA+e   +g+ e A  + ++A+ + +qal+y +  +r +a+ q++e+ 
  MMETSP0890-20130614|7526_1 34 TAKNQVKKAIE---KGNMEGARIYAQNAIREKNQALNYLRMASRIDAVAQRLETA 85
                68899999996...799999**************999999999999999988875 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.2     0.016        45      50     130 ..      16      89 ..       4      92 .. 0.57
   2 ?    8.5   0.1   0.00067       1.8      36      85 ..     109     158 ..      97     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.016
                 CHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF08702.5  50 nktkeieelvksikeslkekqkqakdndniesavskslekki....ililekkilaqesqirvLqevlrsneskiqrLeqdiaqk 130
                  +++++++ +k+ ++  + +++q          v+k +ek       ++ ++ i ++++ +++L+ + +      qrLe++i + 
  MMETSP0890-20130614|7526_1  16 ITSRQMTSASKKCEKGARTAKNQ----------VKKAIEKGNmegaRIYAQNAIREKNQALNYLR-MASRIDAVAQRLETAIRTN 89 
                 33444444444444433333333..........3333333222333367889999999******8.5566777889999999775 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00067
                 HHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHH CS
   PF08702.5  36 kkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavsk 85 
                  ++ek+ ++++ ++++ ++++     +++s++   ++a ++d+++s +s+
  MMETSP0890-20130614|7526_1 109 MDVEKISKTMDAFEKQFEDMDVRAGYMENSMNASTASATPEDQVDSLISE 158
                 589**************************************999776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1311  (0.0958894); expected 273.4 (0.02)
Passed bias filter:                      616  (0.0450556); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 694.94
//
Query:       MMETSP0890-20130614|7527_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   15.6   6.8     0.0068   15.5   4.7    1.2  1  PF09507.5 DNA polymerase subunit Cdc27
  ------ inclusion threshold ------
      0.032   14.4   1.8      0.077   13.2   0.2    2.1  2  PF04359.9 Protein of unknown function (DUF493)
       0.04   12.9   3.7      0.049   12.6   2.6    1.2  1  PF12745.2 Anticodon binding domain of tRNAs
      0.093   13.2   8.8       0.62   10.6   2.7    2.2  2  PF08070.6 DTHCT (NUC029) region
       0.58    9.9   7.4        3.9    7.2   5.1    2.4  1  PF08147.7 DBP10CT (NUC160) domain
       0.79    8.5   5.2       0.94    8.3   3.6    1.1  1  PF10846.3 Protein of unknown function (DUF2722)
        2.5    8.2   7.8        3.6    7.7   5.4    1.4  1  PF06424.7 PRP1 splicing factor, N-terminal
          6    6.8  10.3         32    4.4   1.0    3.6  4  PF05077.7 Protein of unknown function (DUF678)


Domain annotation for each model (and alignments):
>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.7     4e-06    0.0068     277     332 ..      28      89 ..       1     121 [. 0.73

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4e-06
   PF09507.5 277 s..ekk.rqkrlessdseeete...ekekekrkrlkkmmedededeemeivpespqeeeese 332
                 s   k+ ++k  + +d ++++    + ++++rkr kk  + +d+d++++i++es  ++++++
  MMETSP0890-20130614|7527_1  28 SpaSKRlKRKVINLVDDDDDEFhnmKVQQKERKRQKKYISLDDDDDDVQIITESRLSKKKER 89 
                 1334566777777777777766555667778***********************95555444 PP

>> PF04359.9  Protein of unknown function (DUF493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   4.5e-05     0.077      19      56 ..      30      68 ..      22      71 .. 0.91
   2 ?    0.4   0.1      0.44   7.6e+02      29      60 ..      77     109 ..      69     133 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-05
   PF04359.9 19 agedfveavvevverhapevddakvevk.esskgkYvSv 56
                a++ ++ +v+++v++   e+++ kv++k + +++kY+S+
  MMETSP0890-20130614|7527_1 30 ASKRLKRKVINLVDDDDDEFHNMKVQQKeRKRQKKYISL 68
                678899*********99***********89999****97 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.44
   PF04359.9  29 evverhapevddakvevk.esskgkYvSvtvtv 60 
                  + e+ + + ++ k  v+ ess+  Y S+  +v
  MMETSP0890-20130614|7527_1  77 IITESRLSKKKERKALVReESSGLMYPSLEQRV 109
                 555555544434444444366666666655444 PP

>> PF12745.2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.6   2.8e-05     0.049     124     179 ..      43      98 ..       3     104 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.8e-05
   PF12745.2 124 sskkeaaasssesseeselteslasveerqkevvvlnaatrskksnkrekveqeed 179
                 +++ ++  +++ +++e +++++  s ++++ +v++ ++   skk+++++ v +e++
  MMETSP0890-20130614|7527_1  43 DDDDDEFHNMKVQQKERKRQKKYISLDDDDDDVQIITESRLSKKKERKALVREESS 98 
                 23334445555678888889999999*************************99766 PP

>> PF08070.6  DTHCT (NUC029) region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   0.00037      0.62      33      83 ..       4      60 ..       1      64 [. 0.63
   2 ?    4.3   2.5     0.034        58      33      65 ..      57      90 ..      51     120 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00037
   PF08070.6 33 kgkkkrkssssdesdsdfekkvsKsvtskKsKk.......dddddfevdlesavapra 83
                k++k++ +   +++    ++k +Ks +sk+ K+       dddd+f+ +++ +   r+
  MMETSP0890-20130614|7527_1  4 KERKRQSTNMVNDEVVLLGSKGGKSPASKRLKRkvinlvdDDDDEFH-NMKVQQKERK 60
                4455555555677777899*************99**88844444443.3333333333 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.034
   PF08070.6 33 kg.kkkrkssssdesdsdfekkvsKsvtskK.sKk 65
                k+ k+++k  s d++d d +  +  s  skK  +k
  MMETSP0890-20130614|7527_1 57 KErKRQKKYISLDDDDDDVQIIT-ESRLSKKkERK 90
                33255666677777777765544.44444440444 PP

>> PF08147.7  DBP10CT (NUC160) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.1    0.0023       3.9       1      44 [.      40      81 ..      40     112 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0023
   PF08147.7  1 DLvnDekakeskqkklmrWDkkkkkyVsrangskgdkkkIrgEs 44
                +Lv+D++ + ++ k +++  k++kky+s   +  +d   I++Es
  MMETSP0890-20130614|7527_1 40 NLVDDDDDEFHNMKVQQKERKRQKKYISL--DDDDDDVQIITES 81
                589999999888888888889*******9..7777889999998 PP

>> PF10846.3  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.6   0.00055      0.94     314     401 ..       3      89 ..       1     105 [. 0.53

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00055
   PF10846.3 314 vkkhkRrkSs..ssfevidlnsaseilqpsikfensaiasqekeddddddddekerkkeeeedkekdsikddddkdlsedssi.ksesrqr 401
                 +k  ++r+S+   + ev+ l s      p+ k+ + ++++   +ddd+   ++k ++ke++ +k+  s  d dd+d+++ ++   s++++r
  MMETSP0890-20130614|7527_1   3 QK-ERKRQSTnmVNDEVVLLGSKGG-KSPASKRLKRKVINLVDDDDDEFH-NMKVQQKERKRQKKYISLDD-DDDDVQIITESrLSKKKER 89 
                 33.3444444123344444444442.577788887777777766665555.45666666666655545544.5555554433323444444 PP

>> PF06424.7  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.4    0.0021       3.6      35     112 ..      40     119 ..       2     123 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0021
   PF06424.7  35 eeeeedekrlqd..gdneglfskkkydkedeeadriyeeidekldkrrkkrrekkekeekeknekenpkiqeqFadlkrs 112
                 +  ++d++++++   ++++  ++kky + d+++d++    +++l+k+++++   +e+++   + + +++++  F+ lk++
  MMETSP0890-20130614|7527_1  40 NLVDDDDDEFHNmkVQQKERKRQKKYISLDDDDDDVQIITESRLSKKKERKALVREESSGLMYPSLEQRVRYVFVRLKKR 119
                 33444555555532333455556667777888888888899******************999999999******999985 PP

>> PF05077.7  Protein of unknown function (DUF678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.064   1.1e+02       7      21 ..       3      17 ..       1      25 [. 0.86
   2 ?    4.0   0.0     0.026        44       6      24 ..      30      48 ..      22      54 .. 0.85
   3 ?    4.4   1.0     0.019        32       7      34 ..      56      82 ..      49      90 .. 0.59
   4 ?   -1.4   0.0       1.3   2.2e+03      10      20 ..      85      95 ..      75      99 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.064
   PF05077.7  7 kkrrkrkpkttvede 21
                +k rkr+++  v+de
  MMETSP0890-20130614|7527_1  3 QKERKRQSTNMVNDE 17
                6889***99999996 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.026
   PF05077.7  6 gkkrrkrkpkttvedeedd 24
                ++kr krk+   v+d++d+
  MMETSP0890-20130614|7527_1 30 ASKRLKRKVINLVDDDDDE 48
                68999**********9776 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.019
   PF05077.7  7 kkrrkrkpkt.tvedeeddCttCssCqSk 34
                +k rkr+ k  + +d++dd     + +S+
  MMETSP0890-20130614|7527_1 56 QKERKRQKKYiSLDDDDDDV--QIITESR 82
                44455544433888877764..3344555 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1.3
   PF05077.7 10 rkrkpkttved 20
                +k+  k+ v++
  MMETSP0890-20130614|7527_1 85 KKKERKALVRE 95
                44444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       952  (0.0696314); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.92
# Mc/sec: 351.64
//
Query:       MMETSP0890-20130614|7528_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.82
# Mc/sec: 1686.22
//
Query:       MMETSP0890-20130614|7525_1  [L=1215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-67  227.6   0.6    1.1e-66  225.2   0.0    2.6  3  PF00063.16 Myosin head (motor domain)
  ------ inclusion threshold ------
       0.07   13.5   1.8       0.23   11.9   0.1    2.6  2  PF03964.10 Chorion family 2


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0   1.6e-70   1.1e-66     360     655 ..      27     348 ..      14     426 .. 0.85
   2 ?   -3.2   0.0       0.2   1.4e+03     118     181 ..     505     567 ..     491     572 .. 0.85
   3 ?   -5.2   1.7      0.83   5.7e+03     531     570 ..     800     840 ..     775     865 .. 0.46

  Alignments for each domain:
  == domain 1    score: 225.2 bits;  conditional E-value: 1.6e-70
                 .--SEEE-EEE-------SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGCCS--.SCCHHHHHHHHSS----HHHHHHHHTSTTS-HHHHHHHHHHHHTTTST..........TEE-TTTS..................TTT-SSEEEEEESSCEEEEE-TTHHHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH...................CSTT.BTCHHC.-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CS..T CS
  PF00063.16 360 dkaaaviGvlDiaGFeifeknsfeqlciNyanEkLqqffnehifkleqeeyeregieweeidygldnqavidLiekkpaGilsllDeecrlpkatdesflekllktfeskhl..........kfskkrls..................karaessftvkHyAgeVeYsaegflekNkdplsedlvellkssssslvaelfkeeelaedfeeeeaaaesaklgsakgks.gkkkkf.etvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvkl..s 655
                 +++  +iG+lDi+GFe+f  ns+eql+iNyanE+L + fn+++f++  +ey++eg+ +  +++  dn+a +  +e+   G++++l+ ec++ +++d +fl++llk+++ k            +     ++                  +      f v+H+A +V+Y+++gf+ekN+d + +++ +l+  ss  ++a+lf + + +e+ e+ + +++++  +++kg s gk++k  + v+++f +sl  l + L +tn  fvrCikPn+++ ++ f+  +vl+ql+c G+le +  rr G++ ri ++ f++ry ll+e+++     +
  MMETSP0890-20130614|7525_1  27 KSELLTIGLLDIFGFEQFVVNSLEQLLINYANERLLREFNKQVFEAATKEYQAEGVPVGDLTF-HDNSALLHTLENPRGGVFAMLNSECVRRDGSDPNFLASLLKAYNLKGGgqsspvpkskQ-----IQahhglyvpkvgrgssqveRDSVGLVFGVRHFAADVSYTVTGFVEKNRDRVPDEICALVATSSRGFIASLFADVDENENDESASGTGSKTPPKKGKGLSpGKSSKArRYVAANFAQSLSDLTQLLDATNQSFVRCIKPNHKMMSGMFEGVVVLDQLRCMGMLELVEARRRGYARRIDHATFVSRYALLMEDQNDGEtdK 348
                 477889*********************************************************.8***********889**************************996554444443332221.....33567777888887876544444555799*********************************************999777777777777766666665441444444599*********************************************************************************998544322 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.2
                 T.-TTHHHHHHHHHHHHHHH---BEESSETTB-----EEEEEEBTTTBB---EEE--S--GGGG CS
  PF00063.16 118 kaeeeeleskilqanpileafgnaktlrnnnssrfGkfleiqfdasgsivGakietylLeksRv 181
                 +++++++ + +++ n  ++  g   +l+   s + G+  ++ f      +G + ++y+L+  Rv
  MMETSP0890-20130614|7525_1 505 TVKSSKIDECLTSHNISISGEGDLDSLKKQASGKNGN-DDLPFSSGQWFSGSSWSKYVLDAARV 567
                 3778899999999999999999999999999999999.9999*999999***********9998 PP

  == domain 3    score: -5.2 bits;  conditional E-value: 0.83
                 CHSHCH....................CSTTBTCHHC-CHHH CS
  PF00063.16 531 fkeeelaedfeee.eaaaesaklgsakgksgkkkkfetvgs 570
                  ++++ ae+ ee  + +a+ ++++++++++++k+++  +++
  MMETSP0890-20130614|7525_1 800 VEQKKEAEKIEERnKIEARREAREKQQSEDAEKERKAKAAA 840
                 33333333222220222223333333333333333333333 PP

>> PF03964.10  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.3e-05      0.23      44      90 ..     717     763 ..     707     768 .. 0.91
   2 ?   -1.4   0.1      0.47   3.2e+03      43      68 ..    1146    1171 ..    1109    1183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.3e-05
  PF03964.10  44 sssdssAaaaAasalaalnaGsykvwkvpsyevdgaygpssgyaaqq 90 
                 +ssd++A a A ++ a+ + G+y      +++v+g  +p++g+  ++
  MMETSP0890-20130614|7525_1 717 ISSDKKAKAFATASTAPARIGKYDELIADVENVNGKAPPQAGKSLNE 763
                 69********************************99****9997665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.47
  PF03964.10   43 ssssdssAaaaAasalaalnaGsykv 68  
                  +    + A++a++++  a ++G+ +v
  MMETSP0890-20130614|7525_1 1146 AHTLAKDAISASSLGDGATQEGGMLV 1171
                  55556789999999999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1308  (0.09567); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.89u 0.39s 00:00:02.27 Elapsed: 00:00:01.32
# Mc/sec: 2205.74
//
Query:       MMETSP0890-20130614|7531_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-58  194.6   0.4    7.1e-58  194.4   0.3    1.0  1  PF00071.17 Ras family
      4e-21   75.5   0.0    6.9e-21   74.8   0.0    1.4  1  PF08477.8  Miro-like protein
    4.1e-14   52.0   0.1    5.1e-14   51.7   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    3.3e-06   26.3   0.1      4e-06   26.0   0.0    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
      6e-05   22.4   0.0    0.00019   20.7   0.0    1.7  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0031   17.4   0.0     0.0049   16.7   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
     0.0037   16.6   0.1     0.0092   15.3   0.0    1.6  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
  ------ inclusion threshold ------
      0.013   14.5   0.1      0.042   12.9   0.0    1.7  2  PF09439.5  Signal recognition particle receptor beta subunit
      0.019   14.0   0.0        1.2    8.2   0.0    2.2  2  PF02421.13 Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4   0.3   4.7e-61   7.1e-58       2     161 ..      18     178 ..      17     179 .. 0.98

  Alignments for each domain:
  == domain 1    score: 194.4 bits;  conditional E-value: 4.7e-61
                 EEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGG.G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
  PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee.kravsteegeelakelglkfletSAktnenveeafeellreil 161
                 l+++Gds+vGKtsl++r+ ed+F+++y +Tigvd   k i+v+g+e+kl+iwDTAGqe+f+sl+ +++ +a+g+++++di++r +f++v++w+++++++++ +v ++L+G K+Dl++ +r+vs++e+++la+++g++++e+SAk+n+nv+ +fe+l++++ 
  MMETSP0890-20130614|7531_1  18 LLMIGDSSVGKTSLVIRYDEDEFSTKYMTTIGVDYRDKFIQVEGREIKLQIWDTAGQERFRSLTANFFGKADGFVVCFDISNRGTFNHVRNWIHDVQQHKRGEVDVALCGCKCDLSTdQRQVSFDEAQALARQYGVPYYEASAKENTNVKATFEDLAQKVV 178
                 899**************************************************************************************************99************8669**************************************9986 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   4.6e-24   6.9e-21       1     119 []      17     131 ..      17     131 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 4.6e-24
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 +++ +Gd++vGK+sl+ ++ ++ef+  + ++ ++g ++ +k ++v++ + +l++wd++g+e++ +    ++ kad++++ +d++++ ++++v++ +   ++ ++   ++ v l+g+k+D
  MMETSP0890-20130614|7531_1  17 RLLMIGDSSVGKTSLVIRYDEDEFS--TKYMTTIGVDYRDKFIQVEGREIKLQIWDTAGQERFRSLTANFFGKADGFVVCFDISNRGTFNHVRNWIHDVQQHKR--GEVDVALCGCKCD 131
                 6788*********************..99************************************99999**********************998888888886..468899******9 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.4e-17   5.1e-14      14     143 ..      15     148 ..       5     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 3.4e-17
                 EEEEEEE--TT---HHHHHHHHHS-EEE.E-S--S-EEE....EEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTT CS
  PF00025.16  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnve....eleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgle 143
                  +r+l++G  + GKt ++ ++ ++e++t  + Tig + +    ++e +++k+++wD  Gqe+ R+l  n+f k d+ + + D ++r  +++ ++ ++ + +++   ev + + + K Dl+++  +    e+ +l 
  MMETSP0890-20130614|7531_1  15 VIRLLMIGDSSVGKTSLVIRYDEDEFSTkYMTTIGVDYRdkfiQVEGREIKLQIWDTAGQERFRSLTANFFGKADGFVVCFDISNRGTFNHVRNWIHDVQQHK-RGEVDVALCGCKCDLSTDQRQVSFDEAQALA 148
                 589**********************99857899999876333357779**************************************************86665.56899999999***99998887777766654 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.6e-09     4e-06       1     142 [.      17     150 ..      17     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.6e-09
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsn..ylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqysp.eakvfvlihKmDlisedereeifeerkeeire 142
                 +lL++G s+ GKtS+  i +++  ++ + ++++g+  + +  +v+  + +kl++wD+ Gqe+f + +      + f + +  +  fDi+    + ++++ ++ ++ ++q+++ e+ v     K D +s d+r+ +f+e ++  r+
  MMETSP0890-20130614|7531_1  17 RLLMIGDSSVGKTSLV-IRYDEdeFSTKYMTTIGVDYRDKFIQVE-GREIKLQIWDTAGQERFRSLT-----ANFFGKADGFVVCFDIS---NRGTFNHVRNWIHDVQQHKRgEVDVALCGCKCD-LSTDQRQVSFDEAQALARQ 150
                 589***********64.4454311444444455554444445554.4579**********9998885.....89***************...57899***********99883456666668999.7799999999998877665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.3e-07   0.00019      59     185 ..      55     176 ..      13     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.3e-07
                 EEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETT.S-S-HHHHHHH...HHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHH CS
  PF00009.22  59 aaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdav.eGvepqTeevl...rlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivel 185
                 + i++e  +++ ++++ Dt G + F + +++    +Dg v+ +d +  G  +  ++ +   ++ k+ +v + ++  K+D+  ++ +   +e++  l ++y       vp +  Sa+++++++a +e + ++
  MMETSP0890-20130614|7531_1  55 KFIQVE--GREIKLQIWDTAGQERFRSLTANFFGKADGFVVCFDISnRGTFNHVRNWIhdvQQHKRGEVDVALCGCKCDLSTDQRQVSFDEAQ-ALARQY------GVPYYEASAKENTNVKATFEDLAQK 176
                 345555..999*********************************86256555555555111555566677***********999999999999.776666......4799***********9988877765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.2e-06    0.0049       3     102 ..      19     110 ..      17     136 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.2e-06
                 EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEE..ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS.HHHHHHHHHHHHH CS
  PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenev..kkek...iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa.vlkeadkellnel 102
                  ++G + vGK++L+ +       + s +  tT  + ++ ++  ++++   ++++Dt+G           e++++ +++   +ad+ ++++d+s+     + +++ n++
  MMETSP0890-20130614|7531_1  19 LMIGDSSVGKTSLVIRYD---EDEFSTKYMTTIGVdYRDKFiqVEGReikLQIWDTAGQ----------ERFRSLTANFfGKADGFVVCFDISNrG---TFNHVRNWI 110
                 689***********9996...3467888888988855566655333354458******2..........35666677777***********65422...344555555 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.1e-06    0.0092       3      46 ..      17      62 ..      15      74 .. 0.86
   2 ?   -2.1   0.0       1.4   2.2e+03      98     137 ..     129     169 ..     127     175 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.1e-06
   PF10662.4  3 killiGkvgaGKTtLtqalkgeel..kykkTQaielseeviDtPGe 46
                ++l+iG + +GKT+L+ + +++e   ky  T  +++++++i   G 
  MMETSP0890-20130614|7531_1 17 RLLMIGDSSVGKTSLVIRYDEDEFstKYMTTIGVDYRDKFIQVEGR 62
                789****************998865599************988776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
   PF10662.4  98 kidlaedeenielve..elLkaaGaekifevsavekegieel 137
                 k dl++d+ +++  e   l ++ G+   +e sa e+++++  
  MMETSP0890-20130614|7531_1 129 KCDLSTDQRQVSFDEaqALARQYGV-PYYEASAKENTNVKAT 169
                 6777777777765441023334444.3477777777777665 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.042       5      64 ..      17      79 ..      13      95 .. 0.82
   2 ?   -1.3   0.0      0.63   9.6e+02     127     155 ..     160     188 ..     157     206 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
                EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-.....-----EEEE----GGGGH CS
   PF09439.5  5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgkkltliDfPGheklrq 64
                ++l++G s  GKTsl  r  +d++ + ++        +k+   + ++ kl++ D  G+e++r+
  MMETSP0890-20130614|7531_1 17 RLLMIGDSSVGKTSLVIRYDEDEFSTKYMTTiGVDYRDKFiqVEGREIKLQIWDTAGQERFRS 79
                5799******************9888887765777888884334566677889********97 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.63
                 ---HHHHHHHHHHHHHHHHHHHHHHHH-- CS
   PF09439.5 127 akspklikdaLEkElnkiierrskalkel 155
                 ak+++ +k   E   +k+++r+ ++ ++ 
  MMETSP0890-20130614|7531_1 160 AKENTNVKATFEDLAQKVVQRKLQETNQR 188
                 78888888888888888888887766654 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.015        23       2      50 ..      17      65 ..      16      83 .. 0.74
   2 ?    8.2   0.0   0.00078       1.2     121     167 ..     137     184 ..     114     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.015
                EEEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEE CS
  PF02421.13  2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeve 50
                ++ ++G+  vGKt+l+ +  + + ++   + + V+ +   ++++g+e++
  MMETSP0890-20130614|7531_1 17 RLLMIGDSSVGKTSLVIRYDEDEFSTKYMTTIGVDYRDKFIQVEGREIK 65
                6789***********9887777777766677777777777766665554 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00078
                 ---EB-.HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX CS
  PF02421.13 121 kgikid.lkkLselLgvpvvktvarkkkgieelleaiievaekeekek 167
                 +++++d +++L+++ gvp  + +a++++++++ +e +++++ +++ ++
  MMETSP0890-20130614|7531_1 137 RQVSFDeAQALARQYGVPYYEASAKENTNVKATFEDLAQKVVQRKLQE 184
                 4556662578*********************99999987776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       786  (0.0574898); expected 273.4 (0.02)
Passed bias filter:                      654  (0.047835); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:01.02
# Mc/sec: 493.37
//
Query:       MMETSP0890-20130614|7534_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0028   17.8   0.0      0.003   17.7   0.0    1.1  1  PF00959.14 Phage lysozyme
  ------ inclusion threshold ------
      0.099   12.3   0.1        0.2   11.3   0.1    1.5  1  PF08358.5  Carlavirus coat


Domain annotation for each model (and alignments):
>> PF00959.14  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.4e-07     0.003      46     110 .]      50     109 ..      12     115 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.4e-07
                 HHS-HHHHHHHHHHHHH---CTTTTEHHHHHHHHTT-HHHHHHHHHCS.B...HHHHHCHHHHHH CS
  PF00959.14  46 kdleperqdalvslafnvGkgGkrkastllralnagqwkkacsaiwkslksgGkeynglkrrrek 110
                 + ++ e q +lv+++fn G     k++++   l+ g+w+ a+++ ++s     +++ ++ +r+e+
  MMETSP0890-20130614|7534_1  50 EGFPGEVQEILVNMMFNLGRPRLSKFKNMKAFLKRGEWAAAAREGRDS-----RWFEQVGNRAER 109
                 56788899***********99999***********************9.....999999998875 PP

>> PF08358.5  Carlavirus coat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     3e-05       0.2      18      37 ..      60      79 ..      56      81 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
   PF08358.5 18 vtNpgfEiGRPaLkptdemr 37
                ++N+ f +GRP+L    +m+
  MMETSP0890-20130614|7534_1 60 LVNMMFNLGRPRLSKFKNMK 79
                78************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.80
# Mc/sec: 350.47
//
Query:       MMETSP0890-20130614|7535_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2008  (0.14687); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:01.05
# Mc/sec: 1068.09
//
Query:       MMETSP0890-20130614|7540_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.96
# Mc/sec: 247.12
//
Query:       MMETSP0890-20130614|7544_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-48  164.9   0.0    2.4e-48  164.0   0.0    1.4  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   1.8e-52   2.4e-48       8     180 ..      45     226 ..      44     228 .. 0.94

  Alignments for each domain:
  == domain 1    score: 164.0 bits;  conditional E-value: 1.8e-52
  PF00574.18   8 diysrllkeriiflgeevddevankivaqLlfLesedsdkdislyinSpG.........GsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevle 180
                 d+ s ll++ri+ lg ++   v++ iva+Ll+L+ e+ +k+++lyinSpG         G  t+ +aI dt+k+ikp+v+tic+G+a  +a+++l+ G+kg R++lpna im+hqP ++a+gqasd++i+a+e++  ++   e++a+++g+s+e++ +d +r ++l++e+A++yGliD+vl 
  MMETSP0890-20130614|7544_1  45 DLASLLLHNRIVYLGMPMVPAVTELIVAELLYLNYESATKPVTLYINSPGtvsadgrsvGFETEAFAIADTMKYIKPPVHTICVGQAFGAAAMLLSQGAKGFRACLPNASIMLHQPRSMARGQASDVAIKAREVMVNRKIQCELLARACGKSVEEVLQDAQRTKYLTPEQAVQYGLIDRVLH 226
                 567889********************************************555444444445788*******************************************************************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.88
# Mc/sec: 661.72
//
Query:       MMETSP0890-20130614|7547_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-09   35.3   2.1    7.6e-09   35.3   1.5    2.0  2  PF08190.7 pre-RNA processing PIH1/Nop17


Domain annotation for each model (and alignments):
>> PF08190.7  pre-RNA processing PIH1/Nop17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   1.5   5.6e-13   7.6e-09     172     327 ..      36     181 ..      11     182 .. 0.76
   2 ?   -0.8   1.6     0.053   7.3e+02     148     214 ..     224     263 ..     192     291 .. 0.42

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 5.6e-13
   PF08190.7 172 d....rlidaklpasppsqvkkqkesgkliqevlsektqeaskkaksklieeiesaeiqspeptkpeysvkaegvvdlslfkdsrdsksegvpkelvieieLPgvksvaevdLrvsedrlllevekekYrLdlkLpypvdeeeaeAkFnkkkktLtvtlp 327
                 d     +++ +++++  +++ +qk  ++++ ++  ++ +  ++ +++k+i+ i s+       +k + ++ ++++ +++ + d+     +++p ++++e+++++    + +dL+v  + l +  ++    L+lkLpy+v+ +e+ A+  k++  L+v +p
  MMETSP0890-20130614|7547_1  36 DtdasAPYTPEVRTAMYEEMAEQK-DEEIQRKIAMQPRERDYADEQKKAISDIRSK------EEKDAQKIMQCNQGNWTFHFDE-----DKKPGYIILEVHVQRHLDSSLIDLDVHPNYLSIIIKS--KTLRLKLPYEVKASESFAQRSKASGFLVVNMP 181
                 144445566666666666666555.4555555556666777777788888899888......333444456699**********.....******************************9998777..68****************************98 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.053
   PF08190.7 148 fkykGslepqrirlkkpkkeenakdrlidaklpasppsqvkkqkesgkliqevlsekt..........qeaskkaks 214
                 ++ k + +p +ir+k+++                                                  +e++++++ 
  MMETSP0890-20130614|7547_1 224 KQAKENNNPRVIRKKAKPSL-------------------------------------AsvlltdanlsDEEDQQSNP 263
                 22222333333333333333.....................................03333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.80
# Mc/sec: 877.67
//
Query:       MMETSP0890-20130614|7548_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47   10.5  11.5       0.33   11.1   6.4    1.8  2  PF09026.5 Centromere protein B dimerisation domain
       0.76    7.4   4.0       0.95    7.1   2.8    1.1  1  PF04147.7 Nop14-like family
       0.89    9.2   5.6          1    9.0   3.9    1.2  1  PF03153.8 Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.43   1.9e+03      83      87 ..      44      48 ..      24      63 .. 0.53
   2 ?   11.1   6.4   7.2e-05      0.33      20      40 ..     102     122 ..      86     127 .. 0.53

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.43
   PF09026.5 83 vtrkn 87
                  r n
  MMETSP0890-20130614|7548_1 44 QQREN 48
                12222 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.2e-05
   PF09026.5  20 eedeeedeededeedeeedde 40 
                  +d++ed++d+d++d+e+dd+
  MMETSP0890-20130614|7548_1 102 ADDDDEDNDDNDDNDDEDDDD 122
                 344444444444444444443 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.8   0.00021      0.95     341     374 ..      57     122 ..      35     125 .. 0.37

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00021
   PF04147.7 341 e........................................eegvededeeeddddeeeeeedvdedeeeedee 374
                 +                                               d   dddde+  ++d d++++e+d++
  MMETSP0890-20130614|7548_1  57 SaarrrerlfglllatlitsaaqndtiplplgfllgfggdaL------DALADDDDED--NDDNDDNDDEDDDD 122
                 044444444444444444444444444455555443222221......2222222222..11111111111111 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.9   0.00023         1     284     307 ..      96     123 ..      32     127 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00023
                 X....----------------------- CS
   PF03153.8 284 v....ieeDlddseDDvseedeedlddt 307
                 +      +D+d+++DD  ++d+ed+dd+
  MMETSP0890-20130614|7548_1  96 DaldaLADDDDEDNDDNDDNDDEDDDDD 123
                 0444322222222333334444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       761  (0.0556612); expected 273.4 (0.02)
Passed bias filter:                      587  (0.0429345); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.45s 00:00:00.94 Elapsed: 00:00:00.65
# Mc/sec: 471.90
//
Query:       MMETSP0890-20130614|7549_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   13.5   0.0      0.052   12.9   0.0    1.3  1  PF13369.1 Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> PF13369.1  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.8e-06     0.052      33      74 ..     111     150 ..      78     154 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.8e-06
   PF13369.1  33 evlygelgFagneddyydprnslldkvlerrrGipislsvly 74 
                 e  + +l+F++ ++d   +r s+l+kv+ r++ +p +l vl 
  MMETSP0890-20130614|7549_1 111 EHGF-RLQFSYHPHDI-TLRFSYLPKVVTRKTMLPALLHVLQ 150
                 4433.67899999887.688******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.64
# Mc/sec: 595.34
//
Query:       MMETSP0890-20130614|7551_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-23   83.7   0.0    1.6e-23   83.3   0.0    1.1  1  PF01223.18 DNA/RNA non-specific endonuclease


Domain annotation for each model (and alignments):
>> PF01223.18  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   1.2e-27   1.6e-23      71     204 ..       1     156 [.       1     158 [. 0.94

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 1.2e-27
                 -S-GHHHHSSHCCHHHCCBGGG---E.EHHHHHTTHHHHHHHHHHHCCS..T--EEEEEE--E-ES--............-----B-S-B--ECEEEEEEEECS-TT.......TBEEEEEEEEETTS--S--GGGG.--HHHHHHH---BTTTTS CS
  PF01223.18  71 LaaaaadksstsaqkqtfnytNavPQ.wagfNrgnWlrlEnlvrklvrs..enrdvyVvtgplfvprl...........vvyellgknkvavPthfwKvilsesadk.......klaaaafllpnanileatnlqsf.vpvdeierltgldfacgv 204
                 +++aa+ + s+ a++++f ++N++PQ  +g+Nr++W+rlE+l+r+ + +  + +++ ++tgplf p++           +  ++  +  + vPthf+K+il  s+++         a++af++pn+ i  +t+l+sf +p++++e+++g+ f+ ++
  MMETSP0890-20130614|7551_1   1 MVPAADLNHSEIALRDSFCLANVSPQiGKGLNRDYWARLEKLARDILLKkgAADELFIITGPLFLPTKrgrgkehlrydYHAIGQPPSVISVPTHFYKIILAVSKSRalgfsgaGYALGAFVIPNEAIKPETPLTSFiAPLEAVEAAAGVIFFAEL 156
                 8999999**************************************99877799************************986666777788*************999999******99*********************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 854.35
//
Query:       MMETSP0890-20130614|7552_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   45.5   0.8    3.5e-05   22.6   0.6    2.6  2  PF00036.27 EF hand
    1.5e-11   42.9   1.1    4.1e-05   22.6   0.0    2.5  2  PF13202.1  EF hand
    1.1e-10   40.3   0.2    0.00052   19.5   0.0    3.2  3  PF13405.1  EF-hand domain
    3.3e-09   36.6   0.0    1.2e-08   34.8   0.0    2.0  1  PF13499.1  EF-hand domain pair
      8e-08   31.6   0.8     0.0061   16.0   0.4    2.6  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.8e-08   0.00021       2      25 ..      44      67 ..      43      70 .. 0.90
   2 !   22.6   0.6   1.3e-08   3.5e-05       6      26 ..     109     129 ..     109     132 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.8e-08
                HHHHHHHHCTTTSSEBEHHHHHHH CS
  PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkea 25
                l+ +F+++D Dg+G++s eE+ ++
  MMETSP0890-20130614|7552_1 44 LQSIFSHLDADGSGQVSSEELESF 67
                789******************877 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.3e-08
                 HHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27   6 FkefDkDgdGkIsfeEfkeal 26 
                 F+e+D++gdG I+++Ef +++
  MMETSP0890-20130614|7552_1 109 FDEYDTNGDGGIDYKEFTDVV 129
                 9****************9987 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-08   4.1e-05       1      25 []      44      68 ..      44      68 .. 0.93
   2 !   18.1   0.4   3.8e-07     0.001       5      24 ..     109     128 ..     104     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.5e-08
                HHHHHHHH--S----B-HHHHHHHH CS
   PF13202.1  1 lkdtFrafDlNgDGkIsreELkrlv 25
                l+++F+ +D++g+G++s eEL+ +v
  MMETSP0890-20130614|7552_1 44 LQSIFSHLDADGSGQVSSEELESFV 68
                7889*****************9886 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.8e-07
                 HHHH--S----B-HHHHHHH CS
   PF13202.1   5 FrafDlNgDGkIsreELkrl 24 
                 F+++D+NgDG I+ +E+  +
  MMETSP0890-20130614|7552_1 109 FDEYDTNGDGGIDYKEFTDV 128
                 9****************765 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-07   0.00052       2      25 ..      44      67 ..      43      77 .. 0.86
   2 !   16.8   0.1   1.4e-06    0.0039       6      26 ..     109     129 ..     109     135 .. 0.90
   3 ?   -2.6   0.0       2.4   6.7e+03      16      25 ..     199     208 ..     192     210 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.9e-07
                HH---GCC-------B---HHHHH CS
   PF13405.1  2 lreaFklfDkdgdGkidaeELrda 25
                l+++F ++D dg+G+++ eEL ++
  MMETSP0890-20130614|7552_1 44 LQSIFSHLDADGSGQVSSEELESF 67
                789******************884 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.4e-06
                 -GCC-------B---HHHHHH CS
   PF13405.1   6 FklfDkdgdGkidaeELrdaL 26 
                 F+ +D++gdG id +E+ d+ 
  MMETSP0890-20130614|7552_1 109 FDEYDTNGDGGIDYKEFTDVV 129
                 99***************9975 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.4
                 -B---HHHHH CS
   PF13405.1  16 kidaeELrda 25 
                 +i++++++d+
  MMETSP0890-20130614|7552_1 199 QITRNDIQDV 208
                 7999999986 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   4.3e-12   1.2e-08       2      63 ..      44     126 ..      36     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 4.3e-12
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgsels...................deevrevldyifk..elDkngdGvlsfeEfl 63 
                 l+ +F+ lD dg+g+++ eeL+ +  +++ + +                      +++ +++i++  e+D+ngdG +++ Ef 
  MMETSP0890-20130614|7552_1  44 LQSIFSHLDADGSGQVSSEELESFVLKALRHATraakqraglllpqgedfsnAAAIQKRVQDILNfdEYDTNGDGGIDYKEFT 126
                 6679*************************99999999999999999999999777777888888888***************6 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     2e-05     0.055      27      46 ..      44      63 ..      42      69 .. 0.92
   2 !   16.0   0.4   2.2e-06    0.0061      31      51 ..     109     129 ..     109     131 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   PF13833.1 27 vdilfrefDtdgdGkisfeE 46
                ++ +f+++D+dg+G +s eE
  MMETSP0890-20130614|7552_1 44 LQSIFSHLDADGSGQVSSEE 63
                699***************99 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.2e-06
   PF13833.1  31 frefDtdgdGkisfeEFcvll 51 
                 f+e Dt+gdG i+++EF +++
  MMETSP0890-20130614|7552_1 109 FDEYDTNGDGGIDYKEFTDVV 129
                 8999*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 1238.68
//
Query:       MMETSP0890-20130614|7554_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-47  161.1   0.1    4.3e-47  160.7   0.1    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.031   13.5   0.0      0.068   12.4   0.0    1.4  1  PF13407.1  Periplasmic binding protein domain
      0.074   13.0   0.0       0.19   11.7   0.0    1.6  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.1   9.3e-51   4.3e-47       4     293 ..      18     311 ..      16     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: 160.7 bits;  conditional E-value: 9.3e-51
                 G-----EEE...----------EEEEEGGGSTTSBCCHCHHHHHHHCHHHC..---EEEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..HHHHHHHHHHS...--TT.-CHHHHHHHHT-HHCCCHHHH.----..-B--------HHHHHHCCCCCTH.TT---EEEEEGGG.....-TT-..................S...----T..TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..H CS
  PF00291.20   4 gvgpTPlvrlpsallsklgganvflKlEslnptgSfKdRgaanallralak..ggkgvveassGNhGaavAlaaallglkativvpsgappekialiralGaevilvvssvegdyddaaelaekalelvrplkgei...ldqs.ndpdviaGygtiglEileqlg.kpdpdavvvpvGgGgliaGiakglkelil.pkirvigvepegs.....dalarslragervqldkk...ttia.glscgt.pldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegsl 293
                  +g+TPlvrl+ +l+    g+++++K E++np+g+ KdR a+ +l++a ++   + +vve ssG + +a+A    + g+k + vvp+++++ek+  + a+G e + v+ +     +   +++ +a ++v+++  ++   +dq+ n+++  a+++++g+Ei++q+g ++d   +v+++G+Gg+iaG++++l +  +  ++r+i ++p gs      ++ ++++ ++r+++ ++   +ti+ g++ ++ + + + a +++d+     + v+d++al ++  l r eg++++ps+a++  a+ ra+ ++ +
  MMETSP0890-20130614|7554_1  18 LIGRTPLVRLR-SLELLCPGCEFLAKAEHMNPSGTGKDRMALAMLEKAAQElgEQGTVVEGSSGSTVIALAPLVVAKGYKLIAVVPDDVSEEKRNHLLAMGVELKIVKPAS---ISSPEHYVNQA-RRVASFSQQRaicTDQFeNPANNQAHCKSTGQEIFRQCGgRIDI--FVASAGTGGTIAGVSRFLLS--RlANTRIILADPPGSslfalVKFGVCYAPQQRERTLRRhryDTITdGVGLDRiTSNFASATAIHDA-----YRVTDQHALLMAHFLFRFEGLFLGPSSAINCLAAVRAANDSLH 311
                 58*******98.45556789***************************87779755568********************************************988888854...46666666544.46777766667999999*********************99***9..99999***************..556***********9666664555555555554433333454555588777742223333333333.....3*********************************998877643 PP

>> PF13407.1  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05     0.068      17      67 ..      58     106 ..      48     109 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   PF13407.1  17 regleaaakelgaevtvvgdaendaaeQvaqiedaiaqgvdgIivapvdst 67 
                  ++le+aa+elg ++tvv  ++++ ++ +a    ++a+g+++I+v p d++
  MMETSP0890-20130614|7554_1  58 LAMLEKAAQELGEQGTVV--EGSSGSTVIALAPLVVAKGYKLIAVVPDDVS 106
                 5789*************9..888889999999999************9986 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.19      43      96 ..     311     365 ..     303     371 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
                 ESSS-HHHHHHHHHH.HHHHS--SE...EE-----TTTSH.HHHHHHHH---EEE CS
  PF00665.21  43 lkdessaetvadlleraverrggkepkrllsDngseftsk.afeallkelgikhk 96 
                 +++e++++  ++l++++++ r+  ++ ++l+D g  + s+   +++l++ g ++ 
  MMETSP0890-20130614|7554_1 311 HQNEETSSFYINLFNHFFWHRPKYRVVTILCDSGQRYLSRfWNRQFLENRGLEWP 365
                 56778999999************99**************9666899999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 1328.27
//
Query:       MMETSP0890-20130614|7556_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.3   0.2      0.053   13.3   0.1    2.4  3  PF11938.3 TLR4 regulator and MIR-interacting MSAP
        0.7    9.2   3.9       0.19   11.1   0.5    1.6  2  PF07048.6 Protein of unknown function (DUF1331)


Domain annotation for each model (and alignments):
>> PF11938.3  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3     0.018   1.3e+02       4     131 ..      47      67 ..      43      90 .. 0.51
   2 ?   13.3   0.1   7.8e-06     0.053     103     150 ..     116     165 ..      93     166 .. 0.83
   3 ?   -3.6   0.1       1.3   8.7e+03      88      88 ..     195     195 ..     184     211 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.018
   PF11938.3   4 CeaCkavaeeleealsktdpkkevdvrgfrldsdgkrkkkkkylarSelrlvEllegvCekmkdyklekekstsrrvakkmsetketlkelvekgvkveasaeskelkkaCerllEehEdeleelfkk 131
                 C +Ck  +eel ++++                                                                                                           ++  k
  MMETSP0890-20130614|7556_1  47 CLVCKQATEELWQQVE-----------------------------------------------------------------------------------------------------------DATGK 67 
                 6666666666555554...........................................................................................................33333 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.8e-06
   PF11938.3 103 asaeskelkkaCerllEehEdeleelfkkeqee..edlskkLCeeeskaC 150
                  ++e  ++ kaC ++ +e+ ++++e+++k +++  + l+   C++ ++ C
  MMETSP0890-20130614|7556_1 116 CRRECRTIAKACRTVYDEYREDVAEALYKRSVSslDRLKSRVCNKWANVC 165
                 6788899************88888888887777699*********99999 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.3
   PF11938.3  88 k 88 
                 +
  MMETSP0890-20130614|7556_1 195 Q 195
                 1 PP

>> PF07048.6  Protein of unknown function (DUF1331)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   2.8e-05      0.19       7      18 ..       4      15 ..       2      17 .. 0.93
   2 ?   -3.4   0.1      0.92   6.3e+03      15      22 ..     129     136 ..     128     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   PF07048.6  7 GVlTVVaLTVYP 18
                G +TV+a+TVYP
  MMETSP0890-20130614|7556_1  4 GFVTVIAITVYP 15
                89********** PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.92
   PF07048.6  15 TVYPKVRE 22 
                 TVY   RE
  MMETSP0890-20130614|7556_1 129 TVYDEYRE 136
                 99*98888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       742  (0.0542715); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.91
# Mc/sec: 595.14
//
Query:       MMETSP0890-20130614|7558_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.3   1.4    4.6e-09   36.1   0.0    2.7  3  PF00651.26 BTB/POZ domain


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   3.4e-13   4.6e-09       7     107 ..     178     279 ..     172     283 .. 0.86
   2 ?   -3.6   0.1      0.73   9.9e+03      24      34 ..     321     331 ..     316     332 .. 0.83
   3 !    3.6   0.0    0.0041        56      77     110 ..     361     393 ..     352     394 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 3.4e-13
                 TT-S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTTTTTT-SEEEEEETTS-HHHHHHHHHHHCCSEEEC......ECCHHHHHHHHHHHHT-HHHHCHHHHHH CS
  PF00651.26   7 qgelcDvtlvvgdgkefkahkavLaarSpyFkalftggeieestvseieledvepevfealLefiYtgeleit.....seenveelLaaadllqiprlkdaceefl 107
                 ++  +Dvtl +  g ++ ah+ +Laar  +F   f++ + +     +i l+    +v+  +L ++Y++ ++ +      +e+ + lL aa++++++ l + +e  l
  MMETSP0890-20130614|7558_1 178 EENGSDVTLILAHGARIAAHRSILAARCGFFARHFKNPY-APC---TILLNAEYRQVIDTMLCYVYSDIIRGKererlLRETPKLLLDAAHRFDVKGLAEYVELVL 279
                 56789*******9*************************5.433...5877888888**************99999998668999999*********9998777655 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.73
                 EE-HHHHHHH- CS
  PF00651.26  24 kahkavLaarS 34 
                  a ka Laa+S
  MMETSP0890-20130614|7558_1 321 IAKKAALAAAS 331
                 5899*****99 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0041
                 EC.ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH- CS
  PF00651.26  77 eitseenveelLaaadllqiprlkdaceeflkes 110
                 +i + +n+++l+ +a  l+ ++l+dac  + k++
  MMETSP0890-20130614|7558_1 361 NI-ENSNLVNLFGLAASLDNDKLRDACIAHAKKN 393
                 45.489*********************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:00.66
# Mc/sec: 1750.07
//
Query:       MMETSP0890-20130614|7557_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-57  194.5   0.0    2.9e-57  194.1   0.0    1.1  1  PF00656.17 Caspase domain
    4.6e-21   74.2  12.6    6.4e-11   41.7   2.8    2.4  2  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.0   4.3e-61   2.9e-57       1     246 [.     175     414 ..     175     417 .. 0.92

  Alignments for each domain:
  == domain 1    score: 194.1 bits;  conditional E-value: 4.3e-61
                 -EEEEEE----SST------HHHHHHHHHHHHHTT-EEEE....EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S--SSS--B-------SS--CEE--TTTSEEEEESSSTEE-CCEC....TT---HHHHHHHHHHHHHTTTH.HHTTTSBHHHHHHHHHHHHHTSC---EEEEEE-SS CS
  PF00656.17   1 kkAllIginyfgtkaeLrGcvnDvermaklLkrlgFeveni..lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn...lildddfrdlvckslpekpk.tiilDaChsgglideakeqigestkkktkkssereeegagsskgplpadgillsgcqtdqtSadaag.kteaggaftqalqqvlketnekgeitnkelvlnarltlvkqkvaqkkqrPglscsdltk 246
                 +kAllIginy gt aeLrGc+nDv+rm++ L    F +++   l+dd     p+++ni++ +++lv+  + gD+l++h+sGHG ++++ ++de +gyde+ivp+d++    i+dd++ + +  +lpe+ + t i+D+Chsg+ +d+a ++ +++                  +  ++ ad+ +lsgc + q Sadaa+ ++ +gga+t a++qv+    ++++   +  ++ a+++++++k     qrP+ls+s +++
  MMETSP0890-20130614|7557_1 175 RKALLIGINYKGTRAELRGCINDVHRMRQYLLTQSFPPQETiiLTDDnaqmmPSRANILRYIDWLVSGTQRGDSLFFHFSGHGAQQEDLDGDEEDGYDETIVPCDFKragQITDDELWKRLVAPLPEGSRlTSIMDCCHSGTGLDLAFTYTQSRG------------WTVDDNPAHAAADIQMLSGCEDAQCSADAATsSGIHGGAMTSAFLQVI----KDNPMPLYPDLMSALHRELRRKG--FNQRPQLSSSQRFD 414
                 79*****************************99999887776888889**************************************************************9****998888888*************************977664............5577888999*******************755****************....66688999999999999888776..5*******999986 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   1.0   2.2e-13   1.5e-09       1      31 []       5      34 ..       5      34 .. 0.93
   2 !   41.7   2.8   9.3e-15   6.4e-11       1      31 []      61      90 ..      61      90 .. 0.97

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 2.2e-13
                ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21  1 lppgWeersddddGrvYYyNheTgetqWekP 31
                lppgW+e  d + GrvYY +h++ +tqWe+P
  MMETSP0890-20130614|7557_1  5 LPPGWTESRDAQ-GRVYYSDHINHKTQWERP 34
                8****9877788.*****************9 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 9.3e-15
                ---SEEE.E.E----EEEEETTT--EESS-- CS
  PF00397.21  1 lppgWeersddddGrvYYyNheTgetqWekP 31
                lppgWeer+++d Gr+YY+Nh+ + t+W+ P
  MMETSP0890-20130614|7557_1 61 LPPGWEERTTPD-GRKYYVNHNDKSTHWTLP 90
                8********999.***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:01.00
# Mc/sec: 1145.46
//
Query:       MMETSP0890-20130614|7553_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 698.94
//
Query:       MMETSP0890-20130614|7564_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       131  (0.00958163); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.78
# Mc/sec: 221.20
//
Query:       MMETSP0890-20130614|7560_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-20   72.0   0.1    1.3e-19   70.7   0.1    1.7  2  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    4.6e-06   26.8   0.6    1.1e-05   25.7   0.1    1.8  2  PF03447.11 Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.044   14.0   0.1      0.092   13.0   0.0    1.6  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
      0.045   13.4   0.0       0.12   12.1   0.0    1.8  1  PF02310.14 B12 binding domain


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1   3.8e-23   1.3e-19       1     119 [.      64     183 ..      64     184 .. 0.92
   2 ?   -2.9   0.0       2.4   8.1e+03      67     101 ..     393     427 ..     380     441 .. 0.70

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 3.8e-23
                 EEEEEE----HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHHHHHCTHH.CCSSHHHHHHSTT-SEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE CS
  PF01408.17   1 lrvgivGaGkigsrhlrplnesqrreelvalvdpdperaeavaesfgve.aysdleelledpkidavivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsvg 119
                 +++g+ GaG+++ +++++l+  +  e    +v+++ er+e++a+  g+  ay ++ee l+d+++d+++ +  ++ +++++ ++l+agkh l+EKP+a t ++ak+  +la+kk+  ++ g
  MMETSP0890-20130614|7560_1  64 IKWGFMGAGRVAHDFANALKVVEGAELHCVAVSSGLERSENFAKLHGFIkAYGSYEEALKDKEVDIIYLSAMHSSRVEHVTKILNAGKHALVEKPIAITSDDAKQFFALAKKKNLFLMEG 183
                 689*****************9955554444689999**********9888***************************************************************9888766 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.4
                 EE-S-GGGHHHHHHHHHHTT-.EEEEESSS-SSHHH CS
  PF01408.17  67 ivatpngthadlalaaleagk.hvllEKPlattvee 101
                 +   pn+++++++ aa+ + + + l E P   t+ee
  MMETSP0890-20130614|7560_1 393 YFYYPNSMGFAYEAAAVSRIIaAGLTECPQ-YTAEE 427
                 556788888888888888877666666665.44444 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.1e+03      79      97 ..      22      41 ..      18      48 .. 0.71
   2 !   25.7   0.1   3.1e-09   1.1e-05       1     111 [.      70     177 ..      70     181 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.2
                HHH---EEE----TGGG.-H CS
  PF03447.11 79 aLeagkhvvtankgAla.de 97
                 ++ag ++vt+  +Ala   
  MMETSP0890-20130614|7560_1 22 LVAAGLAIVTLGLAALArRT 41
                46889999999999999333 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 3.1e-09
                 -------HHHHHHHH---SSEEEEEEEEESS.EEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--TTT---HHHHHH---EEE----TGGG-HCHHHCCCSSSTT-- CS
  PF03447.11   1 GlGaiGsallellkrqqeeiplelvavadrd.sllskarkallgdeavtldlddlvadlrvdvvVEcasseavaelvlkaLeagkhvvtankgAladealyeeLreaaeasg 111
                 G+G+++  ++++lk  +   ++el+ va+++  + s+++++l g ++ + + ++ ++d +vd++   a +++  e+v+k+L+agkh ++    A++ ++ +++++++a++++
  MMETSP0890-20130614|7560_1  70 GAGRVAHDFANALKVVE---GAELHCVAVSSgLERSENFAKLHGFIKAYGSYEEALKDKEVDIIYLSAMHSSRVEHVTKILNAGKHALVEKPIAIT-SDDAKQFFALAKKKN 177
                 99***********7765...99*********9999*****************************999****************************9.9999*******9986 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.7e-05     0.092       2      69 ..      66     132 ..      65     177 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.7e-05
  PF03807.12   2 igiiGaGnigealakgl.aaagaqkheviiaasrspekaeelaeelg.vkvtavsneeaaeeadvvilav 69 
                  g+ GaG++++  a+ l + +g ++ + + a s++ e+ e +a+  g +k+ + s+eea+++ +v i+ +
  MMETSP0890-20130614|7560_1  66 WGFMGAGRVAHDFANALkVVEG-AELHCV-AVSSGLERSENFAKLHGfIKAYG-SYEEALKDKEVDIIYL 132
                 69************99834455.444444.56***********9999899999.*******777655533 PP

>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.12      43      79 ..     118     154 ..      21     161 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.5e-05
  PF02310.14  43 ivealaaeepdvvglSalftssleaakelaraakrvr 79 
                  +eal++ e+d++ lSa+ +s++e++ ++++a k+++
  MMETSP0890-20130614|7560_1 118 YEEALKDKEVDIIYLSAMHSSRVEHVTKILNAGKHAL 154
                 589****************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.87
# Mc/sec: 1225.72
//
Query:       MMETSP0890-20130614|7567_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       924  (0.0675834); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:01.15
# Mc/sec: 789.15
//
Query:       MMETSP0890-20130614|7571_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 270.01
//
Query:       MMETSP0890-20130614|7566_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.94
# Mc/sec: 739.30
//
Query:       MMETSP0890-20130614|7570_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-21   74.9   0.1      2e-11   43.7   0.0    2.2  2  PF13499.1  EF-hand domain pair
    2.7e-18   63.6   0.1    0.00011   21.1   0.0    4.4  4  PF00036.27 EF hand
    5.9e-16   56.7   0.3      0.015   15.0   0.0    4.4  4  PF13405.1  EF-hand domain
    7.8e-12   43.8   4.0    0.00077   18.5   0.2    3.7  3  PF13202.1  EF hand
    1.1e-10   41.1   3.6    1.1e-10   41.1   2.5    2.8  3  PF00397.21 WW domain
    1.6e-10   40.3   0.9    0.00091   18.6   0.1    4.0  4  PF13833.1  EF-hand domain pair
    0.00036   20.1   3.7    0.00094   18.8   2.6    1.7  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0014   18.1   1.8     0.0014   18.1   1.3    1.6  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0018   17.8   1.6     0.0044   16.6   1.1    1.7  1  PF13639.1  Ring finger domain
     0.0039   16.7   2.2       0.23   11.1   0.0    3.1  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
     0.0044   16.9   4.2       0.64    9.9   0.5    3.2  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
      0.037   14.2   0.5        2.1    8.6   0.0    3.0  3  PF13517.1  Family description
      0.054   12.9   0.7       0.12   11.8   0.5    1.6  1  PF14447.1  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.9e-14     2e-11       6      63 ..      54     111 ..      27     112 .. 0.91
   2 !   29.1   0.0     7e-10   7.4e-07       6      62 ..     145     205 ..     124     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.9e-14
   PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                 F + D+++dg+l+++e +++l ++ ++  +e  + + ++++++ D+ngdG+++++E  
  MMETSP0890-20130614|7570_1  54 FAAVDVNNDGWLSYDEVTNALLATCTDVDPERFKSSMQNLWHRWDLNGDGRITYDEIF 111
                 999*****************************************************75 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 7e-10
   PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgsels....deevrevldyifkelDkngdGvlsfeEf 62 
                 F+  D d++ +ldk+e  r+l ++ +  +    ++ ++e +d ++  +D +g+G++sfeEf
  MMETSP0890-20130614|7570_1 145 FNYWDEDHSESLDKAEVYRALIKTFNLGRdaeaMRTMQECIDCVWPIFDADGNGTISFEEF 205
                 8899******************999999988888888888888888**************9 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.5e-06    0.0026       4      26 ..      52      74 ..      51      77 .. 0.90
   2 !   15.0   0.0   9.2e-06    0.0097       3      22 ..      91     110 ..      89     112 .. 0.88
   3 ?    5.5   0.0      0.01        11       4      28 ..     143     167 ..     142     168 .. 0.90
   4 !   21.1   0.0     1e-07   0.00011       8      23 ..     191     206 ..     185     208 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.5e-06
                HHHHHHCTTTSSEBEHHHHHHHH CS
  PF00036.27  4 eaFkefDkDgdGkIsfeEfkeal 26
                 +F+ +D+++dG +s++E  +al
  MMETSP0890-20130614|7570_1 52 AWFAAVDVNNDGWLSYDEVTNAL 74
                68****************98876 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 9.2e-06
                 HHHHHHHCTTTSSEBEHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEf 22 
                 ++++   D +gdG+I+++E 
  MMETSP0890-20130614|7570_1  91 QNLWHRWDLNGDGRITYDEI 110
                 6788999************6 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.01
                 HHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkealkk 28 
                 e+F+  D D++  +++ E  +al k
  MMETSP0890-20130614|7570_1 143 EWFNYWDEDHSESLDKAEVYRALIK 167
                 79****************9998865 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 1e-07
                 HHCTTTSSEBEHHHHH CS
  PF00036.27   8 efDkDgdGkIsfeEfk 23 
                 +fD Dg+G+IsfeEf 
  MMETSP0890-20130614|7570_1 191 IFDADGNGTISFEEFT 206
                 7**************5 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     6e-05     0.064       4      26 ..      52      74 ..      51      79 .. 0.91
   2 !   12.2   0.0   0.00011      0.12       2      22 ..      90     110 ..      89     112 .. 0.89
   3 !   11.0   0.0   0.00027      0.29       4      28 ..     143     167 ..     141     172 .. 0.87
   4 !   15.0   0.0   1.4e-05     0.015       8      23 ..     191     206 ..     185     211 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6e-05
                ---GCC-------B---HHHHHH CS
   PF13405.1  4 eaFklfDkdgdGkidaeELrdaL 26
                + F + D ++dG ++ +E+ +aL
  MMETSP0890-20130614|7570_1 52 AWFAAVDVNNDGWLSYDEVTNAL 74
                579****************9998 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00011
                 HH---GCC-------B---HH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeEL 22 
                 ++ +++  D +gdG+i+ +E+
  MMETSP0890-20130614|7570_1  90 MQNLWHRWDLNGDGRITYDEI 110
                 5678999************97 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00027
                 ---GCC-------B---HHHHHHH. CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLrk 28 
                 e F+  D d++  +d++E+ +aL k
  MMETSP0890-20130614|7570_1 143 EWFNYWDEDHSESLDKAEVYRALIK 167
                 57*****************999865 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 1.4e-05
                 CC-------B---HHH CS
   PF13405.1   8 lfDkdgdGkidaeELr 23 
                 +fD dg+G+i++eE+ 
  MMETSP0890-20130614|7570_1 191 IFDADGNGTISFEEFT 206
                 7*************95 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.5e-05     0.079       3      20 ..      52      69 ..      51      75 .. 0.88
   2 !   12.0   0.2   8.4e-05     0.088       9      20 ..      98     109 ..      98     112 .. 0.93
   3 !   18.5   0.2   7.4e-07   0.00077       8      21 ..     192     205 ..     191     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.5e-05
                HHHHHH--S----B-HHH CS
   PF13202.1  3 dtFrafDlNgDGkIsreE 20
                ++F a+D+N+DG +s +E
  MMETSP0890-20130614|7570_1 52 AWFAAVDVNNDGWLSYDE 69
                69**********999988 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 8.4e-05
                 --S----B-HHH CS
   PF13202.1   9 DlNgDGkIsreE 20 
                 DlNgDG+I+ +E
  MMETSP0890-20130614|7570_1  98 DLNGDGRITYDE 109
                 9*********99 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 7.4e-07
                 H--S----B-HHHH CS
   PF13202.1   8 fDlNgDGkIsreEL 21 
                 fD++g G+Is+eE+
  MMETSP0890-20130614|7570_1 192 FDADGNGTISFEEF 205
                 9************9 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.6   6.9e+03       2      14 ..      50      63 ..      49      63 .. 0.64
   2 ?    0.4   0.1      0.51   5.4e+02       5      15 ..      94     104 ..      91     105 .. 0.76
   3 !   41.1   2.5     1e-13   1.1e-10       1      31 []     274     303 ..     274     303 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.6
                --SEEE.E.E-.-- CS
  PF00397.21  2 ppgWeersddd.dG 14
                p+ W +++d + dG
  MMETSP0890-20130614|7570_1 50 PDAWFAAVDVNnDG 63
                56699777755555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.51
                 EEE.E.E-.--- CS
  PF00397.21   5 Weersddd.dGr 15 
                 W+ r+d + dGr
  MMETSP0890-20130614|7570_1  94 WH-RWDLNgDGR 104
                 95.577999999 PP

  == domain 3    score: 41.1 bits;  conditional E-value: 1e-13
                 ---SEE.E.E.E----EEEEETTT--EESS-- CS
  PF00397.21   1 lppgWe.ersddddGrvYYyNheTgetqWekP 31 
                 lppgW+  r  +d Gr YY++h+T++t+We+P
  MMETSP0890-20130614|7570_1 274 LPPGWQqLRA-PD-GRSYYVDHTTQTTHWEPP 303
                 8****95666.78.*****************9 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00089      0.93      28      51 ..      51      74 ..      39      77 .. 0.82
   2 !    8.3   0.0    0.0015       1.5      33      47 ..      96     110 ..      87     112 .. 0.82
   3 ?    1.7   0.0      0.16   1.7e+02      31      52 ..     145     166 ..     145     168 .. 0.85
   4 !   18.6   0.1   8.7e-07   0.00091       4      47 ..     155     205 ..     152     206 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00089
   PF13833.1 28 dilfrefDtdgdGkisfeEFcvll 51
                d+ f ++D ++dG +s++E  ++l
  MMETSP0890-20130614|7570_1 51 DAWFAAVDVNNDGWLSYDEVTNAL 74
                566999*************87766 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0015
   PF13833.1  33 efDtdgdGkisfeEF 47 
                   D++gdG+i+++E 
  MMETSP0890-20130614|7570_1  96 RWDLNGDGRITYDEI 110
                 569**********96 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.16
   PF13833.1  31 frefDtdgdGkisfeEFcvlle 52 
                 f+  D d++  ++++E +++l 
  MMETSP0890-20130614|7570_1 145 FNYWDEDHSESLDKAEVYRALI 166
                 6778************998875 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 8.7e-07
   PF13833.1   4 lItreeLkral.allglkg.....lseee.vdilfrefDtdgdGkisfeEF 47 
                 +++++e +ral +++ l++      + +e +d++   fD+dg+G isfeEF
  MMETSP0890-20130614|7570_1 155 SLDKAEVYRALiKTFNLGRdaeamRTMQEcIDCVWPIFDADGNGTISFEEF 205
                 678888888888888777788888788888999999*************** PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.6   8.9e-07   0.00094      20      45 ..      13      35 ..       8      36 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 8.9e-07
   PF13923.1 20 pCgHlyCkkCieqwlekskkkCPiCr 45
                 CgH+++k+C++q+ +k   +CP C+
  MMETSP0890-20130614|7570_1 13 SCGHYIHKRCAYQLNDK---RCPHCQ 35
                7************9776...*****5 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.3   1.3e-06    0.0014      19      49 ..      13      40 ..       4      41 .. 0.88
   2 ?   -3.8   0.1       9.1   9.6e+03      38      43 ..     182     187 ..     177     191 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-06
   PF13920.1 19 pCgHlclCeeCaerllkrkkkCpiCrspies 49
                 CgH  + + Ca +l  ++k+Cp C+   e+
  MMETSP0890-20130614|7570_1 13 SCGHY-IHKRCAYQL--NDKRCPHCQIRFEQ 40
                5****.*********..9*******977665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 9.1
   PF13920.1  38 kkCpiC 43 
                 ++C  C
  MMETSP0890-20130614|7570_1 182 QECIDC 187
                 455555 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.1   4.2e-06    0.0044      19      44 ..       6      35 ..       1      37 [. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.2e-06
   PF13639.1 19 l......pCgHvfHeeCldewlrssnsCPlCr 44
                l      +CgH++H++C  ++    ++CP C+
  MMETSP0890-20130614|7570_1  6 LlqmngkSCGHYIHKRCAYQLND--KRCPHCQ 35
                44555547************966..9*****6 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.24   2.5e+02      51      66 ..      56      71 ..      43      81 .. 0.80
   2 ?    2.3   0.0      0.12   1.3e+02      43      65 ..      88     110 ..      81     112 .. 0.88
   3 !   11.1   0.0   0.00022      0.23      41      68 ..     181     208 ..     147     233 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.24
   PF12763.2 51 ladidedgkldfeefc 66
                  d+++dg l ++e +
  MMETSP0890-20130614|7570_1 56 AVDVNNDGWLSYDEVT 71
                459**********986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.12
   PF12763.2  43 dklekiwdladidedgkldfeef 65 
                 + ++++w+  d++ dg++ ++e 
  MMETSP0890-20130614|7570_1  88 SSMQNLWHRWDLNGDGRITYDEI 110
                 568899**************995 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00022
   PF12763.2  41 eedklekiwdladidedgkldfeefcia 68 
                  ++ ++ +w + d d +g++ feef+++
  MMETSP0890-20130614|7570_1 181 MQECIDCVWPIFDADGNGTISFEEFTMT 208
                 5677899******************987 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.011        12      57     109 ..      52     109 ..      17     112 .. 0.64
   2 ?    5.0   0.1      0.02        21      41      76 ..      75     110 ..      53     133 .. 0.50
   3 !    9.9   0.5   0.00061      0.64      46     111 ..     132     206 ..     124     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
   PF10591.4  57 eWkFnqlDtnkdkvlsksElap.lrapl.....vklehCikeffksCDadkdkkisleE 109
                  W F+ +D+n+d+ ls  E+++ l a        ++++ ++++ ++ D++ d++i+ +E
  MMETSP0890-20130614|7570_1  52 AW-FAAVDVNNDGWLSYDEVTNaLLATCtdvdpERFKSSMQNLWHRWDLNGDGRITYDE 109
                 55.78888888888888887541333223422234445666666667777777776666 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.02
   PF10591.4  41 ekeaekknskeckeaveWkFnqlDtnkdkvlsksEl 76 
                 ++  +    +++k++++  ++++D n d+ ++  E+
  MMETSP0890-20130614|7570_1  75 LATCTDVDPERFKSSMQNLWHRWDLNGDGRITYDEI 110
                 233333334444455555555555555555555554 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00061
   PF10591.4  46 kknskeckeaveWkFnqlDtnkdkvlsksEla.plrapl.........vklehCikeffksCDadkdkkisleEWc 111
                 +++s++ ++  eW Fn +D ++ ++l+k+E+  +l + +          ++++Ci+      Dad +++is+eE++
  MMETSP0890-20130614|7570_1 132 NNESPQLNHRPEW-FNYWDEDHSESLDKAEVYrALIKTFnlgrdaeamRTMQECIDCVWPIFDADGNGTISFEEFT 206
                 5666777777788.9*************997414444434466666657899**********************97 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0     0.002       2.1      41      57 ..      49      65 ..      27      67 .. 0.75
   2 ?    1.7   0.0      0.28     3e+02      50      56 ..      98     104 ..      80     105 .. 0.83
   3 ?   -0.6   0.0       1.5   1.6e+03      21      35 ..     192     208 ..     187     220 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.002
   PF13517.1 41 gggtgvafgDldgDGdl 57
                +  ++ a++D+++DG+l
  MMETSP0890-20130614|7570_1 49 KPDAWFAAVDVNNDGWL 65
                3445689********97 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.28
   PF13517.1  50 DldgDGd 56 
                 Dl+gDG+
  MMETSP0890-20130614|7570_1  98 DLNGDGR 104
                 5555554 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.5
   PF13517.1  21 ylnngdGt..ftdvaet 35 
                 +  +g+Gt  f+++++t
  MMETSP0890-20130614|7570_1 192 FDADGNGTisFEEFTMT 208
                 55677777334444433 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   0.00011      0.12      24      53 ..      13      42 ..       8      44 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
   PF14447.1 24 pCgHlvpdet.FdlerYsgCPfCgtrletds 53
                +CgH++ +++ + l++   CP C+ r+e+ +
  MMETSP0890-20130614|7570_1 13 SCGHYIHKRCaYQLND-KRCPHCQIRFEQVD 42
                8*********566665.88*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 946.25
//
Query:       MMETSP0890-20130614|7574_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-28   98.3   0.0    6.7e-28   97.5   0.0    1.4  1  PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
    1.1e-10   41.3   0.0      2e-10   40.4   0.0    1.5  1  PF04101.11 Glycosyltransferase family 28 C-terminal domain
    2.7e-07   30.0   0.0      5e-07   29.1   0.0    1.3  1  PF00534.15 Glycosyl transferases group 1
    2.3e-05   24.4   0.0    5.9e-05   23.1   0.0    1.7  1  PF13692.1  Glycosyl transferases group 1
      0.001   18.1   0.1      0.088   11.8   0.0    2.9  3  PF13528.1  Glycosyl transferase family 1
  ------ inclusion threshold ------
      0.011   15.9   0.0       0.43   10.7   0.0    2.5  2  PF13524.1  Glycosyl transferases group 1
      0.074   13.2   0.2       0.22   11.7   0.1    1.7  1  PF14114.1  Domain of unknown function (DUF4286)


Domain annotation for each model (and alignments):
>> PF06925.6  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   3.4e-31   6.7e-28       1     168 [.       8     179 ..       8     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 3.4e-31
   PF06925.6   1 HnqaaealkealkaefgdeyqvvvkdllkelnpfllkavlksYlflvkvsalyrllyygteekiqkksilaklatfla..kelaalleeeqP.DiiisthplvaelplsvLks...kellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGidksnikvtGiP 168
                 H+++a+al +al++ + ++++  ++d+++e+ p++ k ++ +Y +  k   ++r l  ++  +++  ++++ ++  +   + +++  ++ +P D ++s+hpl ++lpl+v+++   +++ ++ ++vtvvtD++  h+tW++k++d ++v+s+ v+k a++ G+++++ik  G+P
  MMETSP0890-20130614|7574_1   8 HRASAQALGHALERLYPSKIEYEILDIWTEYAPWPYKKFVPWYAYVAKRPLMWRALWSYA--RFPLTRRVQEFSARVQcfDDFEKAFRDREPlDAVVSVHPLCQTLPLRVVRKldkEQNRPETPFVTVVTDLASAHPTWFHKDVDACFVPSDAVAKIAKKVGLQDEKIKQHGLP 179
                 99***********************************************87777777774..3665555555554433114666666666666*****************953221334456799************************************************9 PP

>> PF04101.11  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     1e-13     2e-10      22      97 ..     246     323 ..     208     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1e-13
                 HHHHHHCHHHHCHHHC----EC---STT...-----EEEE-EESSSSHHHHHHHH-EEEEE-----HHHHHHTT--EEE CS
  PF04101.11  22 lkllelksreeqvlhqtGksnyeevkik...veklglkvevfsysdkmaeiikaadlvIsrAGagtiaellalgkplIl 97 
                 ++++++k++++ +++++G ++ ++ + +   +  +    +++ ++++++e+++aad  I+ AG+gtiae+   g+p+ +
  MMETSP0890-20130614|7574_1 246 QSEHNNKNQQFSLVIICGRNEEAQRELEaydWPAN-VHATILGFVKNIDEYMAAADCLITKAGPGTIAEASTRGLPTLI 323
                 33344458999*******99999998885445444.78899**********************************9875 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.6e-10     5e-07      43     169 ..     250     375 ..     239     377 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.6e-10
                 ...GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-.T....TBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHH CS
  PF00534.15  43 q.enpnlklvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasn.v....ggpaeivkdgvtGllvkpkdaealaeaiekllkdeelrerlgena 169
                 + +n+++ lvi+ + +ee++ + +a++   + + +++g+v+  +++e++ +ad+++ +    + + ++ EA + glp+++s        g+  +v++ +  + v    ++ +a+ i+ +l+d+++r +l+ +a
  MMETSP0890-20130614|7574_1 250 NnKNQQFSLVIICGRNEEAQRELEAYDWPANVHATILGFVK--NIDEYMAAADCLITK----AGPGTIAEASTRGLPTLISSyLpgqeFGNVQYVCHEK-QFGVFHRRPKRIAKTIRTWLQDNHTRSQLAAKA 375
                 34566666665444899999999999999999*********..***************....*******************844222235666777777.77777778******************9998776 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     3e-08   5.9e-05      32     135 .]     253     364 ..     243     364 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3e-08
   PF13692.1  32 lpdvelvi.iGkgpd...elarl.lepnve..flgfveelaellasadvglaplrfgeglplKlleylaaGlPvvasdi..g..aeglpee..egvgglv.addpeelaealvrlled 135
                   +++lvi +G++ +   el+++ ++ nv+  +lgfv  + e++a+ad ++   +  +g p+ + e+   GlP++ s++  g  +   + +  +++++ v    p+ +a+ ++  l+d
  MMETSP0890-20130614|7574_1 253 NQQFSLVIiCGRNEEaqrELEAYdWPANVHatILGFVKNIDEYMAAADCLIT--K--AG-PGTIAEASTRGLPTLISSYlpGqeFGNVQ-YvcHEKQFGVfHRRPKRIAKTIRTWLQD 364
                 456776662566655433477778777776447******************7..4..33.899**************995422222222.1347777655588999999999988776 PP

>> PF13528.1  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.023        44       9      26 ..       3      21 ..       1      33 [. 0.81
   2 !   11.8   0.0   4.5e-05     0.088     223     275 ..     263     323 ..     236     363 .. 0.77
   3 ?   -1.0   0.0      0.36   7.1e+02     150     206 ..     346     403 ..     326     426 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.023
   PF13528.1  9 gtGnGHisRaralaeaL.r 26
                 tG GH++ a+al +aL r
  MMETSP0890-20130614|7574_1  3 DTGGGHRASAQALGHALeR 21
                69***************44 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.5e-05
   PF13528.1 223 gkneeear.........egnlqfrpfseegflqdLaeckavianaGfellsEalylgkpvll 275
                 g nee++r         + + ++ +f  +++ +++a ++ +i++aG+ ++ Ea + g+p+l+
  MMETSP0890-20130614|7574_1 263 GRNEEAQReleaydwpaNVHATILGFV-KNIDEYMAAADCLITKAGPGTIAEASTRGLPTLI 323
                 555544445555555333344455565.78999**************************997 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.36
   PF13528.1 150 aafapaqtrlalsfy.aplkkkfetpivppilrkelleaspeeedkilvylpfeele.e 206
                 + f +   r+a ++    ++++++ ++   +   + l+a +   + i  yl+f+ ++  
  MMETSP0890-20130614|7574_1 346 V-FHRRPKRIAKTIRtWLQDNHTRSQLAAKAFSAAQLNATTNIAKDIAHYLGFDHNAsS 403
                 5.555556666666666688889999999999999998888888889999999877644 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.085   1.7e+02      24      64 ..     132     171 ..     131     186 .. 0.73
   2 ?   10.7   0.0   0.00022      0.43      40      82 ..     342     384 ..     294     391 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.085
   PF13524.1  24 pvvtddtsgleelfepgkeivlfedleelaeklryllanpe 64 
                 +vvtd +s+++ +f ++ +++++++ + +a+  +++  ++e
  MMETSP0890-20130614|7574_1 132 TVVTDLASAHPTWFHKDVDACFVPS-DAVAKIAKKVGLQDE 171
                 799**99***************975.344444444444555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00022
   PF13524.1  40 gkeivlfedleelaeklryllanpeereaiaeaarervlaeht 82 
                  + +v+ + ++ +a+ +r +l++ + r+++a++a   ++ + t
  MMETSP0890-20130614|7574_1 342 KQFGVFHRRPKRIAKTIRTWLQDNHTRSQLAAKAFSAAQLNAT 384
                 32345555**************************998876666 PP

>> PF14114.1  Domain of unknown function (DUF4286)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011      0.22      10      77 ..     352     417 ..     349     426 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   PF14114.1  10 eevaeewleWlkeehipevlatgkfskarllkvlseeeeegktysvqYtveseedleaYleeeapklr 77 
                 + +a+ + +Wl+++h +  la + fs+a+l+++++ ++    ++ + +  + + ++e Y++ +++++ 
  MMETSP0890-20130614|7574_1 352 KRIAKTIRTWLQDNHTRSQLAAKAFSAAQLNATTNIAKD--IAHYLGFDHNASSTYEFYHNGDQNQHI 417
                 5789999*************************9999776..677778888888888888877777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.86
# Mc/sec: 1195.39
//
Query:       MMETSP0890-20130614|7573_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-11   41.8   0.2    1.3e-10   40.7   0.0    1.7  2  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.013   14.4   0.6      0.059   12.3   0.1    2.0  2  PF00296.15 Luciferase-like monooxygenase
        3.8    7.2   7.2       0.37   10.5   1.2    2.1  2  PF12773.2  Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   6.5e+03      30      38 ..     200     215 ..     199     226 .. 0.62
   2 !   40.7   0.0   2.9e-14   1.3e-10       1      54 [.     478     529 ..     478     536 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.4
                 TTT--SCC.......H CS
  PF00226.26  30 PDknkdde.......e 38 
                 PDk k++        +
  MMETSP0890-20130614|7573_1 200 PDKKKGKRivpgsslS 215
                 9998888766665552 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 2.9e-14
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHH CS
  PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevL 54 
                 d+Y++Lgv+ +a+ +  +ka+r +alkyHPDk++     a e+f   ++A+++ 
  MMETSP0890-20130614|7573_1 478 DPYSVLGVSSNATFSSCRKAWRAMALKYHPDKCNYAY--AREAFDACAKAWKAI 529
                 89*******************************9999..***********9976 PP

>> PF00296.15  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.3e-05     0.059      89     175 ..      49     129 ..      47     134 .. 0.92
   2 ?   -0.5   0.0      0.11   4.8e+02     121     141 ..     507     527 ..     493     536 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHC---EEEEE-----HHHHHH----CCCHHHHHHHHHHHH----..-SSEE------EEEE---S--SS----EEE--- CS
  PF00296.15  89 kqaatldhlsgGRlelglgtGgseveerafGidhderyarlrEflevlralwtgeevdfeGeffsvkgalllPkppqggiPiyigag 175
                 ++ a + +ls+GR + + g+  + +   +++++++++ +   E+     a w++     +G+f+ + g+++ P+ppq  +Pi  g+g
  MMETSP0890-20130614|7573_1  49 RDCAAVGRLSNGRYIENTGSWTPYEGSPQYPRHYHRPPRINPEYFLPTTAHWNE-----QGQFVPMGGGFAPPRPPQV-HPIAYGGG 129
                 5678999*************9999999*************************44.....8****************99.**998886 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.11
                 -CCCHHHHHHHHHHHH----. CS
  PF00296.15 121 dhderyarlrEflevlralwt 141
                 + + +ya++rE+ +++ ++w+
  MMETSP0890-20130614|7573_1 507 PDKCNYAYAREAFDACAKAWK 527
                 55668***************5 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   8.2e-05      0.37       6      37 ..      24      53 ..      20      61 .. 0.78
   2 ?   -2.0   0.2      0.65   2.9e+03      18      32 ..     329     341 ..     294     346 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.2e-05
   PF12773.2  6 aenpsgarfCpqCgaklkeataeevlCpsCge 37
                ++ +s+ + C+ Cg   +   a++ +C+ C +
  MMETSP0890-20130614|7573_1 24 QPRSSQGKLCKSCGRNYI--SATSSSCRDCAA 53
                567788899999999999..666688999976 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.65
   PF12773.2  18 CgaklkeataeevlC 32 
                 C++  +  t++  +C
  MMETSP0890-20130614|7573_1 329 CQTIQE--TKQDNSC 341
                 222222..4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:01.00
# Mc/sec: 1296.43
//
Query:       MMETSP0890-20130614|7572_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-05   23.5   0.0     0.0002   20.9   0.0    2.1  1  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-08    0.0002      36     109 ..     165     248 ..     158     251 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.5e-08
                 EEEEEHHHHHHHHHHHHHHTTTSTSTS-...-TTSSSHHC.........GTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHH CS
  PF00787.19  36 tvkRrYsdFeeLhskLlrkfprlklPpl...Pkkvlfgsv.........rkkdeefiekrrkgLeeyLqrllnhpelrksevltsF 109
                 +++R+ sdFe+L+ +Ll+++p++ +P l   P+ ++             + ++   +     +L+++L++ l+hpel + ++l+sF
  MMETSP0890-20130614|7572_1 165 SLQRQQSDFEWLRYYLLEEYPGCVVPALlltPGNHWSN-RfahgaipisKVFSGG-ALNDSDALTRFLNQTLEHPELGQAKILASF 248
                 578999********************974434444444.369**99996555554.5567889*******************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:00.95
# Mc/sec: 1798.53
//
Query:       MMETSP0890-20130614|7576_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   33.5   0.0    5.9e-08   32.7   0.0    1.4  1  PF13417.1 Glutathione S-transferase, N-terminal domain
    6.7e-05   22.7   0.0     0.0002   21.1   0.0    1.8  2  PF13409.1 Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   8.6e-12   5.9e-08       1      68 [.      31      95 ..      31     105 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 8.6e-12
                EE--TTSHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHH CS
   PF13417.1  1 LygspfSpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLeddgevltdSlvIieyLe 68
                Lyg+  Sp + kv  +L++ +++y++ e+ pgk+   +++   ++k+PvL   ++v+ dS  I++ L 
  MMETSP0890-20130614|7576_1 31 LYGTMGSPPVVKVATVLKYYKIEYKFQETQPGKG---YKEGASYKKIPVLGVKDRVINDSSIILRNLF 95
                9********************************6...**************************98764 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.81   5.6e+03      24      40 ..      15      29 ..       9      34 .. 0.70
   2 !   21.1   0.0   2.9e-08    0.0002       2      66 ..      37      93 ..      36      96 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.81
                EH....TTSHHHHHHHH CS
   PF13409.1 24 vplepkgfekseellal 40
                v   p +++++++l+++
  MMETSP0890-20130614|7576_1 15 V--PPLDWKTKDDLKDV 29
                3..36789999998875 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.9e-08
                -HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHH CS
   PF13409.1  2 cPwahRvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlry 66
                +P + +v  +l++ ++e++ +++       ++++ +++   + ++PvL +k ++vin+Ss Ilr 
  MMETSP0890-20130614|7576_1 37 SPPVVKVATVLKYYKIEYKFQET-------QPGKGYKEGASYKKIPVLGVK-DRVINDSSIILRN 93
                677789999**********9888.......66788**************95.6**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.91
# Mc/sec: 645.17
//
Query:       MMETSP0890-20130614|7580_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   40.8   3.9    1.1e-10   40.8   2.7    2.1  2  PF00628.24 PHD-finger
    0.00056   19.0   0.1     0.0025   16.9   0.1    2.2  1  PF13831.1  PHD-finger
  ------ inclusion threshold ------
      0.046   13.4   0.0       0.11   12.2   0.0    1.7  1  PF11625.3  Protein of unknown function (DUF3253)
       0.36   10.4   3.6          1    9.0   0.5    2.7  2  PF14446.1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3       2.6   8.8e+03      11      18 ..      84      91 ..      80      98 .. 0.59
   2 !   40.8   2.7   3.3e-14   1.1e-10       2      49 ..     375     421 ..     374     423 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.6
                TS-EEEBS CS
  PF00628.24 11 egelvlCd 18
                 g +vlC 
  MMETSP0890-20130614|7580_1 84 AGVMVLCL 91
                56788884 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 3.3e-14
                 BTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCH CS
  PF00628.24   2 CkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
                 C +Cg+ d+  +l+lCd+C++  Hl+C +++l + +k+ +ewlC+ C 
  MMETSP0890-20130614|7580_1 375 CVVCGKGDDAPTLLLCDRCNRGTHLACFQPPLLDLPKD-DEWLCDACA 421
                 *********************************66664.4*******6 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   7.4e-07    0.0025       4      36 .]     387     421 ..     385     421 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.4e-07
   PF13831.1   4 llvCskCsvaVHasCY..GvseesegeeWlCrrCe 36 
                 ll C++C+   H +C   +  + ++ +eWlC+ C+
  MMETSP0890-20130614|7580_1 387 LLLCDRCNRGTHLACFqpPLLDLPKDDEWLCDACA 421
                 789*************333556667777******6 PP

>> PF11625.3  Protein of unknown function (DUF3253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05      0.11      21      46 ..     147     175 ..     123     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
                 TT--B-HHHHHHHH...-TTS-GGGHHHH CS
   PF11625.3  21 pgksiCPsevAral...apdaWrelmeev 46 
                  +ksiCPs vA+a    +++++ + m ++
  MMETSP0890-20130614|7580_1 147 GDKSICPSKVAQACnvnQEEHFSKEMFRI 175
                 589**********9774444488888655 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5    0.0003         1       4      37 ..     371     403 ..     368     405 .. 0.88
   2 ?    0.7   0.1      0.11   3.8e+02       2      17 ..     411     426 ..     410     430 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0003
   PF14446.1   4 tktrCavCgkklkdkddivvCpeCgapyHreCwe 37 
                  +++C vCgk   d   ++ C++C    H  C++
  MMETSP0890-20130614|7580_1 371 SSIACVVCGKGD-DAPTLLLCDRCNRGTHLACFQ 403
                 5789*****997.68899**************85 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.11
   PF14446.1   2 ndtktrCavCgkklkd 17 
                 +d++  C++C  k+ +
  MMETSP0890-20130614|7580_1 411 KDDEWLCDACAWKMDE 426
                 5566778888888854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 1496.85
//
Query:       MMETSP0890-20130614|7581_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 290.47
//
Query:       MMETSP0890-20130614|7577_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-48  164.8   0.0    1.5e-48  164.2   0.0    1.3  1  PF00174.14 Oxidoreductase molybdopterin binding domain
    9.7e-37  125.4   0.2    3.9e-36  123.4   0.0    1.9  2  PF03404.11 Mo-co oxidoreductase dimerisation domain
    1.1e-14   53.8   0.0    2.2e-14   52.8   0.0    1.5  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00174.14  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   3.3e-52   1.5e-48       1     169 []     231     421 ..     231     421 .. 0.93

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 3.3e-52
  PF00174.14   1 rnhgavpevd.deekwklevdG...lverplslsledLk.klpaeevtatlqCvgnrre.........glqwsagaignakWtGvpLadvLkeagl....kpea.....rhvvfegadeeeeeksgyaesiplekald..edvlLAyemngepLppdhGaPlRlvvpglygaksvKwlkrIevtdeesegyweq 169
                 rnh +vp ++ +ee++++e+       e+++++sl+ Lk k+p++++tatlqC+gnrr+         gl+ws++aig+a+WtG++L dvL+++      k  a      hv f+g+d  + ++++y++s+p + ald  +d+lLAyemn++pL++dhG+P+R+++pg++ga++vK l+rI++ ++es+++w+q
  MMETSP0890-20130614|7577_1 231 RNHLPVPVIEqNEEEYQIEIWScvqSIEEKYQISLATLKnKYPQHTLTATLQCAGNRRSemsetksvkGLSWSKAAIGTATWTGARLIDVLTDILGqdkiK--AlndseFHVRFRGLDVGP-DNEHYETSVPASIALDihRDTLLAYEMNKKPLSRDHGFPIRAIIPGVVGARNVKFLDRITLATTESQSFWQQ 421
                 89*******99889******764447899*****************************9********************************9998844441..144555*********776.9999***********999****************************************************97 PP

>> PF03404.11  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.24   1.1e+03      39      62 ..     285     308 ..     245     313 .. 0.59
   2 !  123.4   0.0   8.5e-40   3.9e-36       3     129 ..     445     573 ..     443     575 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.24
                 ----EEEEEEE-------EE-EEE CS
  PF03404.11  39 ggrritrvevslDkGksWklaele 62 
                 g rr +  e    kG sW++a++ 
  MMETSP0890-20130614|7577_1 285 GNRRSEMSETKSVKGLSWSKAAIG 308
                 344556666667788888888876 PP

  == domain 2    score: 123.4 bits;  conditional E-value: 8.5e-40
                 ---S---EEEEECSBTCEE---..--EEEE-EEE------EEEEEEE-------EE-EEES---T---..-TTS-BEEEEEE--SS.....EEEEEEEEEETT--B--S..HHHHHH-------SEEEEEE CS
  PF03404.11   3 ainelnvnsaitspeheekvklgeetytvkGyAysgggrritrvevslDkGksWklaeleyeedkyregessfcwcfwsldvdvselkk..ekeilvrAvDeslnvqPe..dmiwnvlgmmnnawfrvkik 129
                 ai+el+v+sai +p++   v+++ e + +kGyA+sgggr+i rv+vslD G sW+ ael + ++++ + ++ ++w++w+l vd + l++  + +i ++A+D ++n qPe  + iwn +g +nnaw rv++ 
  MMETSP0890-20130614|7577_1 445 AIQELPVTSAILEPAPASFVNAQ-EDLLIKGYAWSGGGRKIVRVDVSLDAGLSWQPAELIRGDEQQPD-HRAWAWTLWELCVDHNTLQSteKLDIRCKAIDAAYNSQPEdiRPIWNPRGLLNNAWGRVQVS 573
                 89********************9.69*********************************999876655.459********99999866511568999************8889***************996 PP

>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   4.8e-18   2.2e-14       3      75 ..      96     169 ..      94     170 .. 0.95

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 4.8e-18
                 EHHHHHTCE.CTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHH..HHHHHHHHHHHHHHGCGBE--B CS
  PF00173.23   3 tleevskhn.kekdswvvirgkVYDvskflkdhpggasailafaGkDaTeaf..enashseaaekllekyyrvGrl 75 
                  lee++k+n ke  +w+++++ VYDv++f+ +hpgg s il +aG  +  ++   +a+h++++ ++le+ +r+G+l
  MMETSP0890-20130614|7577_1  96 KLEEIEKRNnKETGIWMIYQRGVYDVTEFIAQHPGG-SKILLAAGGSIEPYWnvFKAHHDDTVYEMLEH-LRIGNL 169
                 689******99*************************.9*************9888999***********.****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.78
# Mc/sec: 1772.69
//
Query:       MMETSP0890-20130614|7578_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.91
# Mc/sec: 2014.52
//
Query:       MMETSP0890-20130614|7583_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.80
# Mc/sec: 745.87
//
Query:       MMETSP0890-20130614|7584_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0054   15.8  49.9    1.4e+04   -6.7  34.6    2.6  1  PF04886.7  PT repeat
  ------ inclusion threshold ------
      0.013   14.9   0.1      0.018   14.5   0.0    1.1  1  PF09084.6  NMT1/THI5 like
      0.035   14.0   0.1      0.055   13.4   0.1    1.3  1  PF13715.1  Cna protein B-type domain
       0.11   12.4   0.1       0.19   11.7   0.1    1.2  1  PF10921.3  Protein of unknown function (DUF2710)


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7  34.6         4   1.4e+04       2      36 .]     122     156 ..     120     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: -6.7 bits;  conditional E-value: 4
   PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 pT+qPt  PT  PT  Pt+ PT +Pt  Pt +Pt+
  MMETSP0890-20130614|7584_1 122 PTSQPTLAPTPKPTPKPTPKPTPKPTPKPTPKPTP 156
                 78888888888888888888888888888888875 PP

>> PF09084.6  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.3e-06     0.018      19      67 ..      49      97 ..      47     107 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.3e-06
   PF09084.6 19 eGLdVeilepadpsdavelvaagkadfgvsyqeslllarakglpvvava 67
                +G++++++ p+++ ++     +gk df+vs++e+++ + a g +v++v 
  MMETSP0890-20130614|7584_1 49 QGIEITLKVPGEEDSVQVTNDKGKFDFQVSNAEDVTYEVALGNNVKSVS 97
                8*********99999999999*************************996 PP

>> PF13715.1  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.6e-05     0.055      11      45 ..      44      81 ..      40     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   PF13715.1 11 tgeplpgatitvk...gskkgtvTdedGkFsikvkegs 45
                +ge l+g+ it+k   ++++  vT+ +GkF ++v++ +
  MMETSP0890-20130614|7584_1 44 SGEELQGIEITLKvpgEEDSVQVTNDKGKFDFQVSNAE 81
                5899*********7766669999**********87654 PP

>> PF10921.3  Protein of unknown function (DUF2710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.5e-05      0.19      31      60 ..      70     100 ..      60     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.5e-05
   PF10921.3  31 adkwealvaqaetvtysvdlgd.vravansd 60 
                   k++  v++ae+vty v lg+ v++v+ sd
  MMETSP0890-20130614|7584_1  70 KGKFDFQVSNAEDVTYEVALGNnVKSVSSSD 100
                 5689999*************95499999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.50s 00:00:01.02 Elapsed: 00:00:00.61
# Mc/sec: 844.62
//
Query:       MMETSP0890-20130614|7586_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.50s 00:00:01.06 Elapsed: 00:00:00.69
# Mc/sec: 1298.89
//
Query:       MMETSP0890-20130614|7593_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-41  141.6   0.0    2.6e-41  140.7   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    6.2e-07   29.8   0.7    4.2e-06   27.1   0.1    2.4  2  PF13191.1  AAA ATPase domain
    3.3e-06   27.1   0.0     0.0014   18.6   0.0    2.5  2  PF13401.1  AAA domain
    1.6e-05   24.5   0.1    0.00013   21.5   0.1    2.3  1  PF07728.9  AAA domain (dynein-related subfamily)
    4.5e-05   22.8   2.8      0.002   17.4   0.1    3.3  4  PF13481.1  AAA domain
    0.00011   22.0   0.1    0.00041   20.1   0.0    2.0  2  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00012   21.1   0.0    0.00022   20.2   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00026   20.3   0.2     0.0014   18.0   0.0    2.1  2  PF01695.12 IstB-like ATP binding protein
    0.00042   20.4   0.0     0.0015   18.7   0.0    2.0  1  PF13238.1  AAA domain
    0.00048   20.8   0.1     0.0018   18.9   0.0    2.1  1  PF13207.1  AAA domain
     0.0009   19.2   0.0     0.0018   18.2   0.0    1.5  1  PF00910.17 RNA helicase
     0.0013   17.5   0.0     0.0023   16.7   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
     0.0015   18.0   0.1     0.0046   16.5   0.0    1.8  1  PF13245.1  Part of AAA domain
     0.0017   17.4   0.0     0.0039   16.2   0.0    1.6  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0019   17.9   0.1       0.02   14.6   0.0    2.4  2  PF13671.1  AAA domain
     0.0021   16.7   0.0     0.0042   15.7   0.0    1.4  1  PF06068.8  TIP49 C-terminus
     0.0036   17.1   0.0     0.0083   15.9   0.0    1.6  1  PF13521.1  AAA domain
     0.0058   16.4   0.0      0.021   14.6   0.0    1.9  2  PF13173.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.3   0.0      0.027   13.9   0.0    1.7  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.011   15.2   0.1      0.021   14.3   0.1    1.4  1  PF13479.1  AAA domain
      0.015   14.6   0.1      0.057   12.7   0.0    2.0  1  PF00158.21 Sigma-54 interaction domain
      0.025   14.0   0.0      0.077   12.4   0.0    1.8  2  PF05729.7  NACHT domain
      0.026   13.6   0.0      0.059   12.4   0.0    1.6  1  PF02562.11 PhoH-like protein
      0.029   13.9   0.3        0.5    9.9   0.0    2.7  2  PF01637.13 Archaeal ATPase
      0.031   13.0   0.0      0.054   12.2   0.0    1.3  1  PF01057.12 Parvovirus non-structural protein NS1
      0.032   13.2   0.0       0.13   11.1   0.0    2.0  2  PF06745.8  KaiC
      0.046   12.7   0.0       0.11   11.4   0.0    1.6  1  PF06414.7  Zeta toxin
      0.055   12.9   0.0        0.1   12.1   0.0    1.4  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.064   12.7   0.0       0.17   11.3   0.0    1.7  1  PF13604.1  AAA domain
      0.066   12.6   0.0       0.11   11.9   0.0    1.3  1  PF13500.1  AAA domain
      0.069   13.3   1.5         13    5.9   0.0    2.4  2  PF13476.1  AAA domain
      0.092   12.2   2.9      0.098   12.1   0.9    1.8  1  PF04156.9  IncA protein
       0.11   12.2   0.0       0.27   10.9   0.0    1.7  1  PF04851.10 Type III restriction enzyme, res subunit
       0.13   11.7   0.8       0.31   10.4   0.0    2.0  2  PF13086.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   6.5e-44   2.6e-41       1     132 []     184     317 ..     184     317 .. 0.96

  Alignments for each domain:
  == domain 1    score: 140.7 bits;  conditional E-value: 6.5e-44
                 EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE--S CS
  PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 vllyGppGtGKTlla+a+a++++++fl++ +s +++ky+ges++ ire+f  ak ++ p+++f+DE+da+++sr    +s+++e +r++ +Ll++ldg+++  ++v +++atnrpd ldpallr gR+drkiei+l
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARVIREMFGFAKDHQ-PCVIFMDEVDAIGGSRfseGTSADREIQRTLMELLNQLDGFEQL-GQVKMVMATNRPDILDPALLRpGRLDRKIEIPL 317
                 79******************************************************9.****************986666888899***************7.66****************************985 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       4.9     2e+03      92     125 ..      32      65 ..      12      93 .. 0.61
   2 !   27.1   0.1   1.1e-08   4.2e-06      15      65 ..     172     223 ..     151     279 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 4.9
   PF13191.1  92 gwreallaalgalipelegiiglqalvalldaal 125
                 ++r++ + ++ a+  +  +i ++q+++++l+a++
  MMETSP0890-20130614|7593_1  32 EHRQVEERLKKARFDAKGLIKEFQDTENALQALQ 65 
                 3333333333333335555666666666666555 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.1e-08
   PF13191.1  15 alrrvsegsp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                 ++ rv    p  +l++Gp+G+GK+ L+r+la +i +  l + a+ +++ +  
  MMETSP0890-20130614|7593_1 172 LFVRVGIKPPkGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIG 223
                 567777777889*******************999999999998888877766 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.4e-06    0.0014       7      28 ..     184     205 ..     179     216 .. 0.83
   2 ?    6.4   0.0      0.02       7.9      53     120 ..     208     290 ..     205     299 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.4e-06
   PF13401.1   7 lvvtGesGvGKTtllrrlarql 28 
                 ++++G++G+GKT+l+r la++ 
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNI 205
                 799***************9965 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.02
   PF13401.1  53 ellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL........s..........eealeelrsllddetgvklv 120
                 ++l+ ++sa+ ++  g  +++++++ +   +++++ +++  DE++ +        +          +e+l++l  + +   +vk+v
  MMETSP0890-20130614|7593_1 208 TFLKVVASAIVDKYIG--ESARVIREMFGFAKDHQPCVIFMDEVDAIggsrfsegTsadreiqrtlMELLNQLDGFEQ-LGQVKMV 290
                 5677777777777777..89999999999*****************98876655515665553334444444433333.5555555 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.3e-07   0.00013       1      88 [.     183     263 ..     183     306 .. 0.62

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.3e-07
                 EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHH CS
   PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlsl 88 
                 +vlL GppGtgK+ la+ la+ + ++++ v  ++      ++ ++    g+ ++v  ++   a+  +++++++DEv+ +  + +++  s 
  MMETSP0890-20130614|7593_1 183 GVLLYGPPGTGKTLLARALASNISATFLKVVASA------IVDKYI---GESARVIREMFGFAKdhQPCVIFMDEVDAIGGSRFSEGTSA 263
                 59*********************99999888776......555555...34444444444444455666666666666665555555555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.14        55      78     155 ..       9      79 ..       8      93 .. 0.68
   2 !   17.4   0.1     5e-06     0.002      18      59 ..     166     207 ..     153     218 .. 0.77
   3 ?    0.3   0.0      0.89   3.6e+02     128     169 ..     227     268 ..     212     282 .. 0.70
   4 ?   -2.4   0.0       5.9   2.4e+03     129     178 ..     341     391 ..     311     394 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.14
   PF13481.1  78 saEdseaelrrrlsailaalddpenlllvslagv.gslrltaddrrdalltadlerllaaieelegpdlvviDtlsrlv 155
                 s+E++e +++ rl+a+       ++ + +   +v +  rl +  ++++ l  ++++ ++a+++l  ++ ++ D l++l 
  MMETSP0890-20130614|7593_1   9 SGEGDE-QTEARLQALEDMR---AKIREHR--QVeE--RLKKARFDAKGLIKEFQDTENALQALQSVGQIIGDVLKNLD 79 
                 789999.99****9877333...3333332..2222..33333334444777889999999999989999988888775 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 5e-06
   PF13481.1  18 ppppldwlvk.gllprgsltllaGapgtGKStlalqlaaavat 59 
                 p++ ++  v+ g+ p+++ +ll+G+pgtGK+ la +la ++++
  MMETSP0890-20130614|7593_1 166 PLTNPELFVRvGIKPPKG-VLLYGPPGTGKTLLARALASNISA 207
                 555666666656667777.89******************9985 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.89
   PF13481.1 128 adlerllaaieelegpdlvviDtlsrlvgg...densnsdv.gavi 169
                   ++++  ++++ ++p ++  D ++++ g+   +    +++ +++ 
  MMETSP0890-20130614|7593_1 227 RVIREMFGFAKD-HQPCVIFMDEVDAIGGSrfsE---GTSAdREIQ 268
                 568899999999.89*******999998885431...333323333 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 5.9
   PF13481.1 129 dlerllaaieelegpdlvviDtlsrlvggdensnsdv.gaviaalerlakr 178
                 d+e + ++++ ++g dl  i t + l++   + ++   + +++a++++a++
  MMETSP0890-20130614|7593_1 341 DFESVCKLADGFNGADLRNICTEAGLFAIRADRDYTLeEDFMKAARKIAEH 391
                 556666666666666655555555555555555555446777777777765 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       6.3   2.5e+03      27     164 ..      34      54 ..       4      67 .. 0.50
   2 !   20.1   0.0     1e-06   0.00041       6     104 ..     184     276 ..     179     288 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6.3
                 TT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT CS
   PF07724.9  27 lfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEl 164
                  +v+++ k +r+da+ l++                                                                                                                     E+
  MMETSP0890-20130614|7593_1  34 RQVEERLKKARFDAKGLIK---------------------------------------------------------------------------------------------------------------------EF 54 
                 2223344444444444443.....................................................................................................................33 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1e-06
                 EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----------------HHHHHHHH- CS
   PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqile 104
                 +ll gp g+Gkt+la+ala+ +++    ++  + as++    +     +r i +  g  +  +  ++++DE+d i  ++ s+      ++qr L+ +l 
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISA----TFLKVVASAIVD--KYIGESARVIREMFGFAKDHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLN 276
                 6899******************96....888888888888..23333356666777778888888***********96444444445699*99999986 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.6e-07   0.00022      52     110 ..     183     249 ..     175     255 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.6e-07
   PF05496.7  52 hvllyGpPGlGkttlakiiakelgve.lkvtsgPvleka.gdlaalltnl......eekdvlfidei 110
                  vllyGpPG Gkt la+ +a+++ ++ lkv ++ +++k  g+ a ++ ++      ++  v+f+de+
  MMETSP0890-20130614|7593_1 183 GVLLYGPPGTGKTLLARALASNISATfLKVVASAIVDKYiGESARVIREMfgfakdHQPCVIFMDEV 249
                 59*********************98735777777777742566666655533221122336677766 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.7   6.7e+02       2      23 ..      34      55 ..      33      72 .. 0.80
   2 !   18.0   0.0   3.4e-06    0.0014      48      70 ..     182     204 ..     176     221 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.7
  PF01695.12  2 rrlesrlklaklpakktledfd 23
                r++e+rlk+a++ ak  +++f+
  MMETSP0890-20130614|7593_1 34 RQVEERLKKARFDAKGLIKEFQ 55
                8999********9988777775 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.4e-06
  PF01695.12  48 enlvllGpsGvGKthlAialgve 70 
                 + ++l Gp+G+GKt lA al+ +
  MMETSP0890-20130614|7593_1 182 KGVLLYGPPGTGKTLLARALASN 204
                 6799****************976 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.7e-06    0.0015       1      23 [.     184     219 ..     184     312 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.7e-06
   PF13238.1   1 IlitGtpGvGKtTlakeLaerl.............g 23 
                 +l+ G+pG+GKt la++La+++              
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNIsatflkvvasaivD 219
                 6899****************9855555444443330 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.5e-06    0.0018       2      23 ..     184     205 ..     184     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.5e-06
                 E--B--TT---HHHHHHHHHHS CS
   PF13207.1   2 iaitGppGsGKsTlakeLaerl 23 
                 ++++GppG+GK+ la++La   
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNI 205
                 789****************975 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.6e-06    0.0018       1      49 [.     184     223 ..     184     252 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.6e-06
  PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtg 49 
                 ++lyGp+g+GK++la+ La++++ ++          + +++ ++d+Y g
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISATF---------LKVVASAIVDKYIG 223
                 689**************999999666.........22233444444444 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.8e-06    0.0023      51     115 ..     179     248 ..     144     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.8e-06
   PF05673.8  51 lpannvLLwGarGtGKSslvkallneyaeegLrlie..vekedlkdlpkivellr...erperfilfvDD 115
                 +p + vLL+G  GtGK  l +al ++++++ L+++   +  + + +  ++++++    + ++ +++f+D 
  MMETSP0890-20130614|7593_1 179 KPPKGVLLYGPPGTGKTLLARALASNISATFLKVVAsaIVDKYIGESARVIREMFgfaKDHQPCVIFMDE 248
                 67889*****************************964466777888888887764333777889999996 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-05    0.0046      11      32 ..     183     202 ..     175     233 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-05
   PF13245.1  11 pllvvtGgPGtGKTttlaaiia 32 
                 + +++ G+PGtGKT +la++ a
  MMETSP0890-20130614|7593_1 183 G-VLLYGPPGTGKT-LLARALA 202
                 4.5569********.6666655 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.8e-06    0.0039      25      44 ..     184     203 ..     173     232 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 9.8e-06
  PF01078.16  25 lllvGppGsGKtmlakrlps 44 
                 +ll+GppG+GKt+la++l+s
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALAS 203
                 89**************9986 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.2   4.7e+02     121     141 ..      11      31 ..       5      33 .. 0.85
   2 !   14.6   0.0   4.9e-05      0.02       2      28 ..     184     210 ..     184     316 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.2
   PF13671.1 121 ngddrsevpeealdrmlarfe 141
                 +gd+++e+ ++al++m+a+++
  MMETSP0890-20130614|7593_1  11 EGDEQTEARLQALEDMRAKIR 31 
                 679999***********9976 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.9e-05
   PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrl 28 
                 vll G+pG+GK+ la++l+ +  +++l
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISATFL 210
                 7899**************987765444 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     1e-05    0.0042      51      90 ..     182     219 ..     173     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1e-05
   PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++vLl GppgtGkt la a++ +++    f ++++s +  
  MMETSP0890-20130614|7593_1 182 KGVLLYGPPGTGKTLLARALASNIS--ATFLKVVASAIVD 219
                 89**********************9..6799999988765 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.1e-05    0.0083       2      27 ..     184     213 ..     183     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.1e-05
   PF13521.1   2 ivitGgpstGKTtlleaLaar....gypvv 27 
                 + + G+p+tGKT l++aLa++      +vv
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNisatFLKVV 213
                 6799***************76433333344 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.3   2.1e+03      52      82 ..      38      66 ..       3      74 .. 0.62
   2 !   14.6   0.0   5.2e-05     0.021       4      73 ..     183     252 ..     180     284 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 5.3
   PF13173.1 52 elfleklkekkkylflDEiqevpewedalks 82
                e + +   +  k  ++ E+q  +++ +al+s
  MMETSP0890-20130614|7593_1 38 ERLKKARFDA-K-GLIKEFQDTENALQALQS 66
                3333321222.2.578888888888888876 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5.2e-05
   PF13173.1   4 ilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpellelflek...lke.kkkylflDEiqev 73 
                  ++++Gp ++GKt l++ la++      +l +      ++ + ++  +++++e+   +k+ +  ++f+DE+  +
  MMETSP0890-20130614|7593_1 183 GVLLYGPPGTGKTLLARALASNIS--ATFLKVVASAIVDKYIGES--ARVIREMfgfAKDhQPCVIFMDEVDAI 252
                 689****************98877..7777776666555555544..456666544234446677******987 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.7e-05     0.027       2      30 ..     184     212 ..     183     222 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.7e-05
   PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG++ktll++ala+ ++++f ++
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISATFLKV 212
                 8999********************99887 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   5.2e-05     0.021       6      25 ..     184     203 ..     181     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.2e-05
   PF13479.1   6 vliYGkpGiGKTslaktlpk 25 
                 vl+YG+pG+GKT la+ l +
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALAS 203
                 79*************98844 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014     0.057      23      62 ..     182     218 ..     172     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00014
                 S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS- CS
  PF00158.21  23 ltvlitGesGtGKellAraiheaskrkkkpfvavncaaip 62 
                   vl+ G  GtGK+llAra+ ++ +   + f++v  +ai 
  MMETSP0890-20130614|7593_1 182 KGVLLYGPPGTGKTLLARALASNIS---ATFLKVVASAIV 218
                 679****************987655...445555555553 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019     0.077       3      26 ..     184     207 ..     182     218 .. 0.88
   2 ?   -1.5   0.0       3.6   1.5e+03      76     115 ..     235     276 ..     208     297 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00019
   PF05729.7   3 vilqGeaGsGKTtLlqklasawak 26 
                 v+l G++G GKT L++ las + +
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISA 207
                 799****************98865 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3.6
   PF05729.7  76 llelperlLlilDglDelvsdlgq..lkekqpvrtlLselir 115
                 +++  +  ++++D +D +         +  +++++ L el++
  MMETSP0890-20130614|7593_1 235 FAKDHQPCVIFMDEVDAIGGSRFSegTSADREIQRTLMELLN 276
                 555556666666666666543222344444455555555554 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015     0.059      22      43 ..     184     205 ..     173     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
  PF02562.11  22 vfaiGpaGtGKTylavalavea 43 
                 v++ Gp GtGKT+la ala + 
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNI 205
                 7899***********9999664 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.8   7.4e+02      65     111 ..      23      69 ..      11      85 .. 0.57
   2 ?    9.9   0.0    0.0012       0.5      23      67 ..     184     227 ..     177     280 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.8
                 HHHH....HHHS-SHHHHHHHHT....-----..TS-GG.G--HHHHHH CS
  PF01637.13  65 leefieeeeekkklakalgialpkaeleeilk..kksklvflaleelle 111
                 le++ ++ +e ++++++l++a   a++  + k  + ++++ +al+++ +
  MMETSP0890-20130614|7593_1  23 LEDMRAKIREHRQVEERLKKARFDAKG--LIKefQDTENALQALQSVGQ 69 
                 333333566666666666555555554..22236666666666666654 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0012
                 EEEE--TT---HHHHHHHHHH-..---HHHHH------HHHHHHH CS
  PF01637.13  23 iviyGprrsGKTaLlkeileelkekgkrvvyyinlreefesklee 67 
                 +++yGp ++GKT L + ++++  +  + +v  ++  ++++ + ++
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNI-SATFLKVVASAIVDKYIGESAR 227
                 799*************999999.4444555555544444444444 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013     0.054     117     138 ..     184     205 ..     178     214 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
  PF01057.12 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ tGkt la+a+a  +
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNI 205
                 89****************9876 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00033      0.13      13      37 ..     175     199 ..     155     211 .. 0.86
   2 ?   -2.1   0.0       3.7   1.5e+03     118     149 ..     243     278 ..     218     280 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00033
   PF06745.8  13 kgGipegrvvlitGepGtGKtifal 37 
                   Gi   + vl++G pGtGKt++a 
  MMETSP0890-20130614|7593_1 175 RVGIKPPKGVLLYGPPGTGKTLLAR 199
                 568888899**************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.7
   PF06745.8 118 rvviDsitgl....yeekeavaReilrqlvrvlkkl 149
                  + +D ++++     +e ++  Rei r+l++ l++l
  MMETSP0890-20130614|7593_1 243 VIFMDEVDAIggsrFSEGTSADREIQRTLMELLNQL 278
                 555566655555476777778888888888888876 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00028      0.11      15      42 ..     180     206 ..     169     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00028
   PF06414.7  15 kpkavllgGqpGAGKtslaellleelaa 42 
                  pk vll G+pG GKt la++l   + +
  MMETSP0890-20130614|7593_1 180 PPKGVLLYGPPGTGKTLLARALASNI-S 206
                 5999*****************99877.4 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00025       0.1      17      43 ..     183     209 ..     174     229 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00025
  PF02367.12  17 vvlLsGdlGaGKTtlvkglakglgvkg 43 
                  vlL G+ G+GKT l+++la++++ + 
  MMETSP0890-20130614|7593_1 183 GVLLYGPPGTGKTLLARALASNISATF 209
                 589******************998764 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00042      0.17      21      54 ..     184     217 ..     173     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00042
   PF13604.1  21 avvqGpAGtGKttvlkalrealeaagkrvvglAp 54 
                 +++ Gp+GtGKt + +al+  ++a+  +vv+ A 
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNISATFLKVVASAI 217
                 5677********************9999999886 PP

>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00027      0.11      11      64 ..     191     242 ..     189     299 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00027
   PF13500.1  11 gvGKTlvslgLvsalkrkgnkvgyfKPvqtglesds...daelvqellgldetheea 64 
                 g GKTl + +L+s +     ++ ++K v++ ++++     a++++e++g  ++h+ +
  MMETSP0890-20130614|7593_1 191 GTGKTLLARALASNI-----SATFLKVVASAIVDKYigeSARVIREMFGFAKDHQPC 242
                 78*************.....************964444388888******9999844 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.0     0.063        26     143     198 ..      13      65 ..       2      78 .. 0.79
   2 ?    5.9   0.0     0.032        13      22      39 ..     184     201 ..     161     204 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.063
   PF13476.1 143 rekekfklkekkkrleelekeleeledekellekl.lqeeekekeleeleeeleell 198
                 +    ++++ + + le+++ ++ e  + +e l+k   +++ + ke ++ e++l+ l+
  MMETSP0890-20130614|7593_1  13 D----EQTEARLQALEDMRAKIREHRQVEERLKKArFDAKGLIKEFQDTENALQALQ 65 
                 4....3567788999999****99999888888854788888888888888888876 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.032
   PF13476.1  22 tlItGpNGsGKTTildAi 39 
                 +l++Gp G+GKT +  A+
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARAL 201
                 599**********99997 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   0.00024     0.098     107     170 ..      16      78 ..      10      82 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00024
   PF04156.9 107 leseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl 170
                 +e++l++le+ + +++ e +++eerl++++ + k l ke+++++++++ l++  q    +l+ l
  MMETSP0890-20130614|7593_1  16 TEARLQALEDMRAKIR-EHRQVEERLKKARFDAKGLIKEFQDTENALQALQSVGQIIGDVLKNL 78 
                 5677777777777777.888************************99999988887777776665 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00068      0.27      23      63 ..     179     219 ..     147     249 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00068
  PF04851.10  23 dekkrglivmaTGtGKTlvaasliarlarkflflvprkell 63 
                 +  k +l+  + GtGKTl+a +l++++   fl +v + ++ 
  MMETSP0890-20130614|7593_1 179 KPPKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVD 219
                 5678899999************9999999999999877665 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2         2   8.2e+02     120     151 ..      21      44 ..       3      82 .. 0.47
   2 ?   10.4   0.0   0.00078      0.31      20      41 ..     184     205 ..     172     399 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2
   PF13086.1 120 allkeiseeleelkeklekekkklkqekeklk 151
                 + l++++++++e+++ +e        + +k +
  MMETSP0890-20130614|7593_1  21 QALEDMRAKIREHRQVEE--------RLKKAR 44 
                 333333333333333332........111111 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00078
   PF13086.1  20 tliqGpPgtGKtttivelisql 41 
                  l+ GpPgtGKt    +l s++
  MMETSP0890-20130614|7593_1 184 VLLYGPPGTGKTLLARALASNI 205
                 799*********6666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      635  (0.0464453); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.82u 0.53s 00:00:01.35 Elapsed: 00:00:01.04
# Mc/sec: 928.59
//
Query:       MMETSP0890-20130614|7595_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    8.3   5.7       0.71   10.0   2.0    1.5  2  PF09026.5 Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       0.7   9.5e+03      82      92 ..      25      35 ..      15      38 .. 0.62
   2 ?   10.0   2.0   5.2e-05      0.71       5      23 ..      70      88 ..      67      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.7
   PF09026.5 82 hvtrknharqa 92
                  tr+n   qa
  MMETSP0890-20130614|7595_1 25 TATRQNNVSQA 35
                34666666665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 5.2e-05
   PF09026.5  5 flegeedsesdseeeeede 23
                +l geed es+s+eee+de
  MMETSP0890-20130614|7595_1 70 VLGGEEDDESESDEEEKDE 88
                5789***********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.91
# Mc/sec: 371.30
//
Query:       MMETSP0890-20130614|7596_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.059   13.8   0.0       0.17   12.3   0.0    1.7  2  PF00788.18 Ras association (RalGDS/AF-6) domain


Domain annotation for each model (and alignments):
>> PF00788.18  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.2e-05      0.17      13      44 ..      61      92 ..      56      96 .. 0.81
   2 ?   -2.4   0.0      0.46   6.3e+03      41      48 ..     147     155 ..     132     162 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.2e-05
  PF00788.18 13 kqgttyktilvsststaqeVieallekfglad 44
                ++      ++vs++ t +eV++ +le++gl++
  MMETSP0890-20130614|7596_1 61 SPSDSADYLRVSPQPTYPEVLRRALERAGLDQ 92
                555557789*********************44 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.46
  PF00788.18  41 gl.addped 48 
                  + ++d ++
  MMETSP0890-20130614|7596_1 147 QYcCHDEQN 155
                 223444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 569.13
//
Query:       MMETSP0890-20130614|7594_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.081   12.6   0.0       0.19   11.4   0.0    1.6  1  PF07647.12 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05      0.19       7      44 ..     312     350 ..     311     369 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHT--CCSHHHHHHHTS-SCTCC.CSSCHHHH CS
  PF07647.12   7 edvaeWLrsiglkqYtenFrdqgitggell.lrlteedL 44 
                 +d+ e+L s+++++Y ++F +  i ++  l l   e++L
  MMETSP0890-20130614|7594_1 312 KDLIEFLASVRCEKYLDIFANEDIFSLADLsLVARESQL 350
                 5899****************9999887777666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1240  (0.0906963); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.86
# Mc/sec: 1228.83
//
Query:       MMETSP0890-20130614|7597_1  [L=1046]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-20   71.0   0.0      1e-19   70.4   0.0    1.3  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   7.4e-24     1e-19       7     159 .]     832    1006 ..     826    1006 .. 0.86

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 7.4e-24
  PF00650.15    7 gkvgihgrDkngrpvlylrlgrfdpk....klseeelvrllllvlerllk..............llee........dgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyidpeqlpkelGGt 159 
                  +++ + g D+ g p+ yl lgr+d +    ++ +++l + ++++++ +l+              +  +             g +++iD++g+  +++    i+++k+++  l+   Per +k ++v+aP++f+v+++l+kp+ld+++ +Ki++++ ++  + l +    +++p++lGG+
  MMETSP0890-20130614|7597_1  832 VPFELYGSDRTGLPITYLGLGRMDLAgvvrEVGIDRLEQKIVMQNDMFLDlarqrrilagdesvE--KstsseiqnFRALHGGIFIIDCDGMARRHLT--EIRIFKRVSAALKILHPERQRKTFVVRAPRVFAVIWRLIKPMLDARIISKINILGANDSLKPLIDELGLDNVPSNLGGN 1006
                  55667899*******************99999999***********9999666666665555550..05555565556778889*********55555..4******************************************************9999888888888**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.41u 0.37s 00:00:01.77 Elapsed: 00:00:01.47
# Mc/sec: 1705.16
//
Query:       MMETSP0890-20130614|7598_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-113  378.0   0.0   2.8e-112  374.6   0.0    2.2  1  PF01406.14 tRNA synthetases class I (C) catalytic domain
    1.7e-10   40.0   0.0    1.4e-05   23.8   0.0    2.4  2  PF09334.6  tRNA synthetases class I (M)
    2.8e-06   27.3   0.1    2.8e-06   27.3   0.1    2.7  2  PF09190.6  DALR domain
  ------ inclusion threshold ------
      0.037   13.8   0.0      0.094   12.5   0.0    1.6  1  PF13480.1  Acetyltransferase (GNAT) domain
      0.055   11.3   0.0        2.9    5.6   0.0    2.2  2  PF00133.17 tRNA synthetases class I (I, L, M and V)


Domain annotation for each model (and alignments):
>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.6   0.0    1e-115  2.8e-112       4     298 ..      32     360 ..      29     363 .. 0.88

  Alignments for each domain:
  == domain 1    score: 374.6 bits;  conditional E-value: 1e-115
                 -S----E-EEE---BTTS--B-----HHHHHHHHHHHHHH.----EEEEE-BB--SHHHHHHHHH----HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHH---EEE---...--EEE-GGG-T....T----S---HHHHH------S-......-S-SSTT-EEEE---------------------HHHHHHHHHHH--..--EEEE----TTTTTHHHHHHHHHHHHH-.---EEEE-----EEETTBE--TT-----BHHHHHTTS-HH.................HHHHHHH---TTS-EEE-HHHHHH CS
  PF01406.14   4 kleekkvtlYvCGptvydashlGhaRslvvfDvlrrilqa.lgYdvqfvqnvtDidDkiikrarqeeksvkelaekfieeykkdleaLnvlkptletrvtekideiielvekliekgyaYvssd...gdvyfdvsslk....eYgklskrnleeleagaegevs......eekkdkkDfaLWkaskegepswdspwgkGRPGWhieCsvmaskllg..seidihsGGiDLafPhhenelaqseaafd.kqlvkywlhnghlkiegekmsksLknfltikdvlkkfdpr.................qlRllllsahyrsqldfkeellee 298
                 +++++kvt+Y+CGptvyda+hlGhaR+++ fD++rril++  gY+v++v nvtD+dDkiikr++++++  ++la ++++++ +d++ Lnv +pt+ +rvte+i+eii +v+++++k+ aY  +    g +yfd+++++    +Ygkl ++++++ e+ aege+s      ++k+d++DfaLWk+sk+ge+ wdspwgkGRPGWhieCs+m+++++g    idih+GGiDL fPhh+nelaqsea  + kq v+y+ h+ghl+i g kmsksLknf+ti+++l   ++r                 ++R+++++ hy ++ d+++ +l+ 
  MMETSP0890-20130614|7598_1  32 PMDDRKVTMYCCGPTVYDAAHLGHARTYIQFDMIRRILREvGGYQVTYVMNVTDVDDKIIKRSAEQKRDPRDLAREWEAKFLRDMRRLNVERPTVMPRVTEYIPEIIAFVARIVAKNLAYCDDPsgqGSIYFDTQAFEksgyDYGKLVPESVGSAELLAEGEGSlstpntANKRDARDFALWKQSKPGEIWWDSPWGKGRPGWHIECSAMIDATIGhgGAIDIHGGGIDLRFPHHDNELAQSEAFCGcKQSVNYFAHTGHLNIAGLKMSKSLKNFITIQQALDGIEQRdeqtghlitkhqgtrssTMRIMFAQCHYTKPADYSDAMLAG 360
                 67899**********************************9789*****************************************************************************86655568888888776533337*******************9999**9999******************************************984468***********************************************************99864433211111111111111222688888888888888888887765 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.2e-09   1.4e-05      11      84 ..      48     122 ..      40     127 .. 0.91
   2 !   13.6   0.0   6.6e-06     0.018     314     346 ..     285     317 ..     275     337 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 5.2e-09
                 ----B-------HHHHHHHHHHHH-.--EEEEE---B----HHHHHHHH----HHHHHHHHHHHHHHHHHHHT-- CS
   PF09334.6  11 ngkpHlGhlystiaaDvlarykrlr.geevlfvtgtDehGtkielkAekegltpqelvdkvseefkelfkklnis 84 
                  ++ HlGh+ ++i+ D++ r  r   g++v++v+       ki ++ ++++ +p++l+ + +++f +++++ln++
  MMETSP0890-20130614|7598_1  48 YDAAHLGHARTYIQFDMIRRILREVgGYQVTYVMNVTDVDDKIIKRSAEQKRDPRDLAREWEAKFLRDMRRLNVE 122
                 5789******************98879******998888889999999999********************9986 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.6e-06
                 B--B---EEE---B-BTTTTBS-BHHHHTTTS- CS
   PF09334.6 314 kvvahgyltvegekmSkSrgnvvdpeelleelg 346
                   + +g+l++ g kmSkS++n+++++++l+ ++
  MMETSP0890-20130614|7598_1 285 YFAHTGHLNIAGLKMSKSLKNFITIQQALDGIE 317
                 456689*********************998765 PP

>> PF09190.6  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1     1e-09   2.8e-06       2      56 ..     410     471 ..     409     477 .. 0.76
   2 ?   -1.8   2.3       1.3   3.6e+03      21      44 ..     571     594 ..     570     602 .. 0.62

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1e-09
   PF09190.6   2 FieaMdDDFNTpeAlavLFdLakeiNk.....aekgedkaal.....salaallrelagvLGllq 56 
                 ++ea+ DDFNTp A+ ++  L+ ++N+     +   ++ka+      +a+a+++    ++LG+l 
  MMETSP0890-20130614|7598_1 410 IREALLDDFNTPVAILHMQTLIDHVNSylqacE---TNKATVvslivAAAASVIARYLNILGILD 471
                 689************************764331...22222244555666788999999999985 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.3
   PF09190.6  21 dLakeiNkaekgedkaalsalaal 44 
                 +La e+ k++++e++a+++a++a+
  MMETSP0890-20130614|7598_1 571 KLAQEAEKQQQKEQAAKAKAAKAQ 594
                 589999995555555555555444 PP

>> PF13480.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05     0.094      11      97 ..      66     152 ..      63     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.4e-05
   PF13480.1  11 rrrleelgevefevatdpedld.alldlfraqwarrpdvfadpetraflrdllarlaergalrlyvlrldgrpvAaalglrsggtlyy 97 
                 rr l+e g+++++ +    d+d +++ + ++q++   + +a+++ + flrd+ +  +er  +   v ++  +++A++  ++ ++ +y+
  MMETSP0890-20130614|7598_1  66 RRILREVGGYQVTYVMNVTDVDdKIIKRSAEQKRDP-RDLAREWEAKFLRDMRRLNVERPTVMPRVTEYIPEIIAFVARIVAKNLAYC 152
                 5778999*9999888666665538999999999999.9999*************************************9999999997 PP

>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0053        14      23      67 ..      36      81 ..      24     117 .. 0.84
   2 ?    5.6   0.0    0.0011       2.9     535     576 ..     272     313 ..     245     353 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0053
                -B--EE----B---------HHHHHHHHHHHHH.HHC---B----- CS
  PF00133.17 23 ekFvlvdgPPnatGslHiGhalaktlkdiviry.krmkGkdveyvp 67
                +k +++   P++  + H+Gha + +  d++ r+ +++ G++v yv+
  MMETSP0890-20130614|7598_1 36 RKVTMYCCGPTVYDAAHLGHARTYIQFDMIRRIlREVGGYQVTYVM 81
                55677888899*********************73568899999986 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0011
                 HHHCC----SECEEEE---EE--------TT------CHHHH CS
  PF00133.17 535 lslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvi 576
                 +s a+ g +   + + h   l+  G KMSKsl+N i  ++ +
  MMETSP0890-20130614|7598_1 272 QSEAFCGCKQSVNYFAHTGHLNIAGLKMSKSLKNFITIQQAL 313
                 555555555555566666667789***********9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1229  (0.0898917); expected 273.4 (0.02)
Passed bias filter:                      579  (0.0423493); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.22u 0.40s 00:00:01.62 Elapsed: 00:00:01.38
# Mc/sec: 1153.03
//
Query:       MMETSP0890-20130614|7604_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-22   77.4   0.0    1.3e-21   76.6   0.0    1.4  1  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   9.2e-26   1.3e-21       2     101 ..      23     119 ..      22     122 .. 0.92

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 9.2e-26
  PF00447.12   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                 F  klye++e    ++e + +++w e g +f+v d+++f ++vLp++F h+++aSF+RQLn+YgF+++++ +++         + hk+F++g+ +ll+ i r +
  MMETSP0890-20130614|7604_1  23 FPVKLYELVEgesaKNEEEIIVTWCEGGLAFIVRDMTRFCEEVLPQHFCHNKWASFIRQLNLYGFRRITQGQSS-------GAYWHKYFQRGQPQLLRGISRSR 119
                 889*******665555666799************************************************9988.......99*****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.79
# Mc/sec: 1556.12
//
Query:       MMETSP0890-20130614|7607_1  [L=1117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   18.1   4.8         25    4.6   0.0    6.8  7  PF08308.6 PEGA domain


Domain annotation for each model (and alignments):
>> PF08308.6  PEGA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.049   6.6e+02       4      20 ..     146     162 ..     144     176 .. 0.89
   2 !    3.1   0.0    0.0054        73       3      21 ..     238     256 ..     236     259 .. 0.89
   3 ?   -2.6   0.0      0.33   4.5e+03       4      19 ..     317     332 ..     315     335 .. 0.87
   4 !    2.5   0.0    0.0079   1.1e+02       4      20 ..     453     469 ..     450     471 .. 0.89
   5 ?   -1.0   0.0       0.1   1.4e+03       6      19 ..     471     484 ..     470     489 .. 0.87
   6 !    4.6   0.0    0.0019        25       5      30 ..     545     569 ..     543     577 .. 0.85
   7 ?    0.9   0.0     0.025   3.4e+02      11      27 ..     625     640 ..     601     651 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.049
   PF08308.6   4 lsvsSnPeGatVylDGe 20 
                  s++S+++ ++V+lD+ 
  MMETSP0890-20130614|7607_1 146 MSIRSQQSSSSVFLDES 162
                 58*************84 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0054
   PF08308.6   3 slsvsSnPeGatVylDGey 21 
                 slsv+S+ ++a V +D++ 
  MMETSP0890-20130614|7607_1 238 SLSVRSRKSNAAVDVDEKS 256
                 89**************975 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.33
   PF08308.6   4 lsvsSnPeGatVylDG 19 
                   v+S+++ ++++ D+
  MMETSP0890-20130614|7607_1 317 MVVRSQQSSDSIIFDE 332
                 689**********997 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.0079
   PF08308.6   4 lsvsSnPeGatVylDGe 20 
                 lsv+S++  a+V++D++
  MMETSP0890-20130614|7607_1 453 LSVRSQQTSASVFVDEK 469
                 9**************86 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 0.1
   PF08308.6   6 vsSnPeGatVylDG 19 
                 ++S+ ++a+Vy D 
  MMETSP0890-20130614|7607_1 471 LRSQESNASVYFDD 484
                 789*********97 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.0019
   PF08308.6   5 svsSnPeGatVylDGeyvGkTPvtls 30 
                 sv+S+ ++atVy D    G +P+++ 
  MMETSP0890-20130614|7607_1 545 SVRSQESNATVYFDN-ISGMSPMSMR 569
                 79***********87.9999998765 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.025
   PF08308.6  11 eGatVylDGeyvGkTPv 27 
                 ++atVy D    Gk+P+
  MMETSP0890-20130614|7607_1 625 PNATVYFDN-ISGKSPM 640
                 356666654.5666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       587  (0.0429345); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.46u 0.34s 00:00:01.80 Elapsed: 00:00:00.87
# Mc/sec: 3076.70
//
Query:       MMETSP0890-20130614|7608_1  [L=1213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-57  192.4   0.0    1.1e-56  191.8   0.0    1.2  1  PF00069.20 Protein kinase domain
    1.5e-34  119.1   0.0    2.4e-34  118.5   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    5.9e-06   26.0   0.0     0.0061   16.2   0.0    2.4  2  PF00629.18 MAM domain
     0.0039   16.1   0.1      0.013   14.4   0.0    1.8  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.03   13.9   7.8      0.033   13.8   3.6    2.5  2  PF01636.18 Phosphotransferase enzyme family
       0.12   11.9   0.0       0.18   11.3   0.0    1.2  1  PF11234.3  Protein of unknown function (DUF3036)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.0   4.7e-60   1.1e-56       2     250 ..     640     887 ..     639     895 .. 0.93

  Alignments for each domain:
  == domain 1    score: 191.8 bits;  conditional E-value: 4.7e-60
                 EEEEEEE----EEEEEEEETTCCE...EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS-- CS
  PF00069.20   2 elleklGsGsfGkVykakkkktgk...kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt 250
                 ++ + +G+G+fG+V+ a+k++ ++    +A+K+l+k+  +s+ + +++r E + l+ l+Hp++v+l  +f+++d+lylv++++ gg+l ++l   + + +       +a +++ +l+++H+ g++HrD+K +NiL+d +g++ +aDFGl+     +++  l++++gt  YmAPE+l  +  y+++vD+W+lG +++e+++g++pf+++   +++++++ il+ + +++   s    +el +l++ llek +++Rl 
  MMETSP0890-20130614|7608_1 640 NVTHVIGKGAFGRVLLAIKRSGSEkgrAFAIKVLDKDVVRSTGQAQHTRaERETLAALRHPFVVRLRYAFQSRDRLYLVTDFYAGGSLERHLDdnHPNGIGPARTLYYAAELVAALRHCHQAGVVHRDIKAANILVDARGDVALADFGLCALGvLEDGAPLRSFCGTCVYMAPELLV-GHAYGTSVDWWALGALIFEMASGRPPFEDA---NRRRMFYTILNIPPPYPLFFS----AELVELLSGLLEKRAERRLG 887
                 67789*********99999887766669*********9999888888778*******************************************54455569999999*******************************************976899999******************.*****************************9...999999999999999999988....99****************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0     1e-37   2.4e-34       3     249 ..     641     885 ..     639     889 .. 0.88

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 1e-37
                 EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS CS
  PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeR 249
                 +++ +G+GafG+V+ ++ + + ++k    a+K+l+++  +++   ++   e +++ +l+hp +v+l  ++ ++++l++vt++ +gG+L++ L +++ + +  +++l +a+++  ++++ ++  +vHrd+ a N+L++ +  v ++DfGL+     +d    ++       +mapE+l  + + +  D W+ G l++E+++ g+ p+++ + ++++ ++ +    + p   ++el el++  +e+++e+R
  MMETSP0890-20130614|7608_1 641 VTHVIGKGAFGRVLLAIKR-SGSEKGRAFAIKVLDKDVVRSTgqAQHTRAERETLAALRHPFVVRLRYAFQSRDRLYLVTDFYAGGSLERHLDDNHPNGIGPARTLYYAAELVAALRHCHQAGVVHRDIKAANILVDARGDVALADFGLCALGVLEDGAPLRSF-CGTCVYMAPELLVGHAYGTSVDWWALGALIFEMAS-GRPPFEDANRRRMFYTILN-IPPPYPLFFSAELVELLSGLLEKRAERR 885
                 5789*************99.99999*********7755444322777888*****************************************************************************************************9977666655554.45667*****************************9.99*****999887766644.5567788888888888888877777777 PP

>> PF00629.18  MAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0017       3.8      14      93 ..     136     239 ..     127     246 .. 0.68
   2 !   16.2   0.0   2.7e-06    0.0061     101     155 ..     293     345 ..     285     348 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0017
                 -------EEE-TTTS.----TT---......--EEEE---------..........EEEEEEEEE--SS............--E...EEEEEEE--SSS--EEEE CS
  PF00629.18  14 etddldWtrvsgstptektgpssdhtlgkesghymyvetssgaege..........sarllspllpass............saC...lrFyyhmsgsevgtLnvy 93 
                  + +  W+r+++ +  e t  ++    ++  +   y+ets++ +g+          + +l+sp++p+ss            + C   l F y m+g +v++L ++
  MMETSP0890-20130614|7608_1 136 GDFTRCWSRIRTTNADELTENTNAREASS-GQWWGYTETSNDGKGSaqpddsnpfkRFVLRSPTYPTSSslkdprrgflwpPNCviaLAFDYTMYGASVNNLTLV 239
                 55555677755555533333333333333.2445566666665555566677777799*******88888999********55544489************9987 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.7e-06
                 ----SEEE-----SS-EEEEE-----TS-EEEEEEEE-.------EEE---EEE- CS
  PF00629.18 101 eetllweisgnqgssWqeaevtlsaitkkfqvvfeavrgkgsegdialDdislse 155
                  +++lw+++g++g++W+  ++ +++   +  + f a  gk++ +d+alD i+l +
  MMETSP0890-20130614|7608_1 293 MQQTLWSVQGDSGPDWLGDSIVVPT--GTRVLEFIAYSGKDEFSDVALDAIRLAP 345
                 5789********************9..777899******************9975 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.6e-06     0.013     127     169 ..     751     790 ..     673     798 .. 0.83
   2 ?   -1.9   0.0      0.57   1.3e+03       5      50 ..    1093    1139 ..    1089    1148 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.6e-06
   PF06293.9 127 vGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                 + ++ +  h+agv H+d+ a+nil+d+++   +v+l D+  ++
  MMETSP0890-20130614|7608_1 751 LVAALRHCHQAGVVHRDIKAANILVDARG---DVALADFGLCA 790
                 45567889********************9...99999997776 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.57
   PF06293.9    5 alqgkvvgeangRrttwfvvaek..velalrkyyrggllgklvrdlyr 50  
                  +  ++v gea   r t++  +++    +alr+++  g +++l  d ++
  MMETSP0890-20130614|7608_1 1093 THAAAVGGEARISRQTASFGYPHdaDIAALRHLRERGESHHLWGD-FS 1139
                  555666677777666666666664334789999999999999888.44 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.6   1.4e-05     0.033     151     198 ..     742     792 ..     532     804 .. 0.81
   2 ?   -3.6   0.0       2.8   6.4e+03     101     143 ..     935     979 ..     931    1005 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
                 H.....HHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-BBE CS
  PF01636.18 151 r.....vlaalaallpgaeppvllHgDlhpgNllvdpddgrvgviDfedaglg 198
                 +     +++  aal++   +++++H+D++ +N+lvd+++++ ++ Df+++ lg
  MMETSP0890-20130614|7608_1 742 ArtlyyAAELVAALRH-CHQAGVVHRDIKAANILVDARGDV-ALADFGLCALG 792
                 0333423444444444.58999**************66555.7*******999 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.8
                 HHHHHHHS-.-TTSHGGHCTBCTHHHHHHHHHHHH.HHHHHCTHH CS
  PF01636.18 101 llaalhqad.paadpladflapyltllrllesata.alvaselle 143
                 + +al  ++ p++  ++ + +p++ +l++  +a + ++ +s++++
  MMETSP0890-20130614|7608_1 935 AAGALAGLPlPESGEPTQRQPPTPSELQDQLQANKlRSSPSDTPP 979
                 567777777777777777777777777777777665777777766 PP

>> PF11234.3  Protein of unknown function (DUF3036)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.9e-05      0.18       6      44 ..     430     468 ..     425     471 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.9e-05
   PF11234.3   6 lfLkivivliglvvLalqivlvpllakdeaekgpeiayl 44 
                 +fL+iv +++ + vL+++++lv  +a ++ +k  +++++
  MMETSP0890-20130614|7608_1 430 SFLQIVALVVAVLVLFFCLILVCCMAGKKKKKSGTYRNP 468
                 7**************************998888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.99u 0.40s 00:00:02.39 Elapsed: 00:00:01.17
# Mc/sec: 2484.43
//
Query:       MMETSP0890-20130614|7610_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2034  (0.148771); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.39s 00:00:01.54 Elapsed: 00:00:00.76
# Mc/sec: 1712.13
//
Query:       MMETSP0890-20130614|7613_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-23   78.5  14.0    2.6e-06   26.2   0.3    4.3  4  PF00036.27 EF hand
    7.6e-18   64.3  11.9    1.9e-09   37.3   3.4    2.4  2  PF13499.1  EF-hand domain pair
    8.3e-18   62.5   9.8    0.00013   21.4   0.3    4.4  4  PF13405.1  EF-hand domain
    7.3e-15   53.4  14.1     0.0012   17.9   0.4    4.6  4  PF13202.1  EF hand
    1.1e-12   47.2   6.9    2.2e-08   33.4   0.9    3.8  4  PF13833.1  EF-hand domain pair
    1.2e-07   31.2   7.7    1.9e-05   24.2   0.9    2.6  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
    4.2e-06   26.6   1.5    0.00024   21.0   0.1    2.2  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
     0.0063   16.6   3.2       0.84    9.8   0.6    2.9  3  PF13155.1  Toprim-like
  ------ inclusion threshold ------
       0.09   12.1   0.4          1    8.7   0.2    2.3  2  PF08235.8  LNS2 (Lipin/Ned1/Smp2)
       0.36   11.0   3.1        4.4    7.5   0.4    2.8  3  PF03448.12 MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.3   6.7e-08   9.2e-05       2      28 ..      79     105 ..      78     106 .. 0.92
   2 !   26.2   0.3   1.9e-09   2.6e-06       2      28 ..     113     139 ..     112     140 .. 0.90
   3 !   19.9   0.0   1.9e-07   0.00026       4      28 ..     156     180 ..     154     181 .. 0.91
   4 !   18.5   0.6   5.3e-07   0.00072       3      28 ..     192     217 ..     190     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 6.7e-08
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 + ++F++fD D+ G I+ +E++++l++
  MMETSP0890-20130614|7613_1  79 WHRIFDLFDDDKEGSIDRQEMQNLLTN 105
                 679********************9986 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.9e-09
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                 ++++++++D D+dG+I+f+Ef ++ +k
  MMETSP0890-20130614|7613_1 113 INRIISVLDIDNDGTITFDEFFSFANK 139
                 789******************988766 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 1.9e-07
                 HHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkealkk 28 
                 e+F+++D D +G+I++ E+ +++++
  MMETSP0890-20130614|7613_1 156 EMFDIIDSDASGTITVHEMHRVVAE 180
                 8******************998876 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 5.3e-07
                 HHHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                  ++++ +D Dg+G ++ eEf  +l++
  MMETSP0890-20130614|7613_1 192 FNVIQDLDEDGNGELDIEEFTILLHR 217
                 67899***************988875 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   3.4   1.4e-12   1.9e-09       2      65 ..      79     136 ..      78     137 .. 0.92
   2 !   31.1   0.4   1.3e-10   1.7e-07       4      63 ..     156     212 ..     144     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.4e-12
   PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 ++++F+l+D d+ g++d++e+++ll+++  +  +e++ ++    +  lD ++dG+++f+Ef ++
  MMETSP0890-20130614|7613_1  79 WHRIFDLFDDDKEGSIDRQEMQNLLTNFKCD--EEHINRI----ISVLDIDNDGTITFDEFFSF 136
                 689*************************988..7777777....*****************986 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 1.3e-10
   PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifk...elDkngdGvlsfeEfl 63 
                 e+F+ +D+d +g++++ e+ r+   ++ +  d +v++v    f+   +lD++g+G l+ eEf 
  MMETSP0890-20130614|7613_1 156 EMFDIIDSDASGTITVHEMHRVVAEMLGQ--DLSVEDV----FNviqDLDEDGNGELDIEEFT 212
                 69***********************9965..5555554....55555***************6 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   9.5e-08   0.00013       2      27 ..      79     104 ..      78     109 .. 0.92
   2 !   14.6   0.1   1.4e-05      0.02       7      26 ..     118     137 ..     112     144 .. 0.82
   3 !   15.9   0.0   5.5e-06    0.0075       4      26 ..     156     178 ..     153     183 .. 0.88
   4 !   13.9   0.2   2.5e-05     0.034       9      27 ..     198     216 ..     189     219 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 9.5e-08
                 HH---GCC-------B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                 ++++F+lfD+d+ G id++E++++L+
  MMETSP0890-20130614|7613_1  79 WHRIFDLFDDDKEGSIDRQEMQNLLT 104
                 6799*******************997 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.4e-05
                 GCC-------B---HHHHHH CS
   PF13405.1   7 klfDkdgdGkidaeELrdaL 26 
                   +D d+dG+i+++E+ ++ 
  MMETSP0890-20130614|7613_1 118 SVLDIDNDGTITFDEFFSFA 137
                 679*************8775 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 5.5e-06
                 ---GCC-------B---HHHHHH CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaL 26 
                 e F+++D d +G+i+ +E+ ++ 
  MMETSP0890-20130614|7613_1 156 EMFDIIDSDASGTITVHEMHRVV 178
                 68****************98875 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 2.5e-05
                 C-------B---HHHHHHH CS
   PF13405.1   9 fDkdgdGkidaeELrdaLr 27 
                 +D dg+G++d+eE+  +L+
  MMETSP0890-20130614|7613_1 198 LDEDGNGELDIEEFTILLH 216
                 8999**********98887 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.7   3.7e-06     0.005       4      25 .]      82     103 ..      80     103 .. 0.92
   2 !   17.9   0.4     9e-07    0.0012       4      23 ..     116     135 ..     113     137 .. 0.83
   3 !   13.8   0.0   1.7e-05     0.023       4      25 .]     157     178 ..     154     178 .. 0.90
   4 !   11.3   0.8   0.00011      0.15       6      22 ..     196     212 ..     189     215 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.7e-06
                 HHHHH--S----B-HHHHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkrlv 25 
                 +F+ fD ++ G I+r+E+++l+
  MMETSP0890-20130614|7613_1  82 IFDLFDDDKEGSIDRQEMQNLL 103
                 5*****************9975 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 9e-07
                 HHHHH--S----B-HHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                 + +++D ++DG+I+++E+  
  MMETSP0890-20130614|7613_1 116 IISVLDIDNDGTITFDEFFS 135
                 56789************965 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 1.7e-05
                 HHHHH--S----B-HHHHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkrlv 25 
                 +F+ +D + +G+I+  E+ r+v
  MMETSP0890-20130614|7613_1 157 MFDIIDSDASGTITVHEMHRVV 178
                 7****************98875 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00011
                 HHH--S----B-HHHHH CS
   PF13202.1   6 rafDlNgDGkIsreELk 22 
                 + +D +g G +++eE+ 
  MMETSP0890-20130614|7613_1 196 QDLDEDGNGELDIEEFT 212
                 899************95 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   1.2    0.0024       3.2      29      51 ..      81     103 ..      79     106 .. 0.86
   2 !   33.4   0.9   1.6e-11   2.2e-08       3      51 ..      92     137 ..      90     140 .. 0.89
   3 !    5.8   0.1    0.0068       9.3      28      43 ..     155     170 ..     148     171 .. 0.86
   4 !   24.0   0.3   1.4e-08   1.9e-05       2      50 ..     166     214 ..     165     217 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
   PF13833.1  29 ilfrefDtdgdGkisfeEFcvll 51 
                  +f++fD d+ G i+  E  +ll
  MMETSP0890-20130614|7613_1  81 RIFDLFDDDKEGSIDRQEMQNLL 103
                 59*************99877776 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.6e-11
   PF13833.1   3 GlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvll 51 
                 G+I+r+e++  l+++  k + ee +  +++++D+d+dG i+f+EF ++ 
  MMETSP0890-20130614|7613_1  92 GSIDRQEMQNLLTNF--K-CDEEHINRIISVLDIDNDGTITFDEFFSFA 137
                 99********88877..4.88888*********************9986 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0068
   PF13833.1  28 dilfrefDtdgdGkis 43 
                  ++f+ +D d +G i+
  MMETSP0890-20130614|7613_1 155 AEMFDIIDSDASGTIT 170
                 68***********997 PP

  == domain 4    score: 24.0 bits;  conditional E-value: 1.4e-08
   PF13833.1   2 kGlItreeLkral.allglkglseeevdilfrefDtdgdGkisfeEFcvl 50 
                 +G It +e++r +  +lg++ ls e+v  ++  +D dg+G ++ eEF  l
  MMETSP0890-20130614|7613_1 166 SGTITVHEMHRVVaEMLGQD-LSVEDVFNVIQDLDEDGNGELDIEEFTIL 214
                 699**********9999999.**************************765 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.9   1.4e-08   1.9e-05      10      66 ..      76     134 ..      67     144 .. 0.83
   2 !   10.1   0.4   0.00034      0.47      42      69 ..     185     215 ..     153     220 .. 0.62

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.4e-08
   PF12763.2  10 kkyw.eifsglk.pednkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66 
                 k++w  if+  + +++  +  +++ ++l n k +e+++++i ++ did+dg++ f+ef 
  MMETSP0890-20130614|7613_1  76 KTHWhRIFDLFDdDKEGSIDRQEMQNLLTNFKCDEEHINRIISVLDIDNDGTITFDEFF 134
                 44452588776514667899999**********************************95 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00034
   PF12763.2  42 edklekiwd.ladided..gkldfeefciam 69 
                 +  +e +++ + d+ded  g+ld eef+i +
  MMETSP0890-20130614|7613_1 185 DLSVEDVFNvIQDLDEDgnGELDIEEFTILL 215
                 333444443134555552278*******976 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.7e-07   0.00024      37     111 ..      60     134 ..      14     136 .. 0.79
   2 ?    5.1   0.1     0.014        19      59     110 ..     157     211 ..     138     213 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.7e-07
   PF10591.4  37 seelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                  e+ + e+     ++ k   +  F+ +D +k+++++++E+++l +++   e+ i++ ++  D+d+d++i+++E+ 
  MMETSP0890-20130614|7613_1  60 LEKIKDEDAAAYIENQKTHWHRIFDLFDDDKEGSIDRQEMQNLLTNFKCDEEHINRIISVLDIDNDGTITFDEFF 134
                 33344444444444444444446************************999***********************96 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
   PF10591.4  59 kFnqlDtnkdkvlsksElaplraplvklehCikeffksC.Dadkd..kkisleEW 110
                 +F+ +D+++ + ++ +E++ + a+++  +  ++  f+   D+d+d  +++++eE+
  MMETSP0890-20130614|7613_1 157 MFDIIDSDASGTITVHEMHRVVAEMLGQDLSVEDVFNVIqDLDEDgnGELDIEEF 211
                 8999999*999***********999999998888887666555551156888887 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.6   0.00061      0.84      25      85 ..      56     116 ..      42     125 .. 0.71
   2 ?    2.6   0.0      0.11   1.6e+02      44      66 ..     110     133 ..     100     142 .. 0.76
   3 ?    5.1   0.0     0.018        25      35      79 ..     138     187 ..     135     206 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00061
   PF13155.1  25 slaslgtkltkalakyleekre..keivlalDnDeaGrkaaeklkkalkekgkenekvkvvrl 85 
                 s+  l + +++  a y+e+++    +i   +D D+ G    +++++ l++  ++  + ++ r+
  MMETSP0890-20130614|7613_1  56 SIRALEKIKDEDAAAYIENQKThwHRIFDLFDDDKEGSIDRQEMQNLLTN--FKCDEEHINRI 116
                 66677777888999999655556666******************999987..44555555554 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.11
   PF13155.1  44 kre.keivlalDnDeaGrkaaekl 66 
                 +++ ++i+  lD D+ G  +++++
  MMETSP0890-20130614|7613_1 110 EEHiNRIISVLDIDNDGTITFDEF 133
                 444577***********9999887 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.018
   PF13155.1  35 kalakyleekre.....keivlalDnDeaGrkaaeklkkalkekgkenek 79 
                 ++l+ ylee+       +e+    D+D  G  ++ ++++ ++e+  ++ +
  MMETSP0890-20130614|7613_1 138 NKLETYLEEHADpekltAEMFDIIDSDASGTITVHEMHRVVAEMLGQDLS 187
                 578889977777654444488999*************9888876533333 PP

>> PF08235.8  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.18   2.5e+02      46      67 ..      30      51 ..       9      61 .. 0.81
   2 ?    8.7   0.2   0.00076         1       1      43 [.     160     202 ..     160     206 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.18
   PF08235.8 46 ilyltaRavgqadstrayLkqv 67
                ++ lt+R+ +  ++ +ayL++ 
  MMETSP0890-20130614|7613_1 30 LINLTGRSTTSPTTQKAYLTTS 51
                5778999999999999999876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00076
   PF08235.8   1 vvisdiDGtitksdalGhllslvGkdktraGvaklvrkiqenG 43 
                 ++ sd  Gtit  ++   + +++G+d + + v +++++++e G
  MMETSP0890-20130614|7613_1 160 IIDSDASGTITVHEMHRVVAEMLGQDLSVEDVFNVIQDLDEDG 202
                 56699**********999*******************999988 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.11   1.5e+02      38      72 ..      40      74 ..      37     104 .. 0.66
   2 ?   -0.4   0.0      0.91   1.2e+03      46      63 ..     103     122 ..      68     128 .. 0.59
   3 ?    7.5   0.4    0.0032       4.4      26      76 ..     150     201 ..     137     206 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.11
                -CCCCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCC CS
  PF03448.12 38 sedlqeeliealpdeelaelleeldsDdavdllee 72
                s+ +q++++++  + +  ++le++  +da+  +e+
  MMETSP0890-20130614|7613_1 40 SPTTQKAYLTTSRRGTSIRALEKIKDEDAAAYIEN 74
                56667777777777777777777777777776665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.91
                 CCCS..-HHHHHHHHCTS-H CS
  PF03448.12  46 ieal..pdeelaelleelds 63 
                 ++++  ++e++ ++++ ld 
  MMETSP0890-20130614|7613_1 103 LTNFkcDEEHINRIISVLDI 122
                 33332244444444444444 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0032
                 -HHHHHHHHCTS-CC.CCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCC CS
  PF03448.12  26 pkeeaaevleelsed.lqeeliealpdeelaelleeldsDdavdlleelpee 76 
                 p++  ae+++ +++d      ++++++  ++ l ++l+++d+ +++++l+e+
  MMETSP0890-20130614|7613_1 150 PEKLTAEMFDIIDSDaSGTITVHEMHRVVAEMLGQDLSVEDVFNVIQDLDED 201
                 566789999999988455555788888888888899*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.69
# Mc/sec: 771.00
//
Query:       MMETSP0890-20130614|7611_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   59.3  10.6      0.001   18.7   0.0    6.0  6  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.8e-06     0.025       6      37 ..      96     127 ..      93     129 .. 0.90
   2 !   18.7   0.0   7.3e-08     0.001       4      39 .]     136     172 ..     133     172 .. 0.92
   3 !   14.9   0.0   1.2e-06     0.017      13      39 .]     190     215 ..     187     215 .. 0.94
   4 !   11.7   0.0   1.2e-05      0.16       9      29 ..     227     247 ..     223     259 .. 0.84
   5 ?   -1.7   0.1      0.21   2.8e+03      18      30 ..     343     355 ..     341     356 .. 0.85
   6 ?    1.3   0.0     0.022   3.1e+02      10      26 ..     510     526 ..     507     538 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-06
                 EEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
  PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirl 37 
                 +l + t++  +v+fs d +++as   D+t+++
  MMETSP0890-20130614|7611_1  96 VLPENTKSTISVSFSSDKQRFASTHGDHTVKV 127
                 6777888999*********************9 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 7.3e-08
                 EEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  atlrgH  + + v+f+p+ +++lasg+     r+W+
  MMETSP0890-20130614|7611_1 136 EATLRGHPRTPWTVKFHPHdPQILASGCLGFEARIWH 172
                 689*************************999999996 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 1.2e-06
                 SEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  13 pVtcvafspdgpllasgSrDgtirlWd 39 
                 ++ +++f+pdg lla +   ++i++W+
  MMETSP0890-20130614|7611_1 190 AIISLSFHPDGDLLAVAAG-NSIYIWH 215
                 689****************.******6 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 1.2e-05
                 SSSSSEEEEEEESSSTEEEEE CS
  PF00400.27   9 gHtspVtcvafspdgpllasg 29 
                 +H +p++c++f p+g+l++ +
  MMETSP0890-20130614|7611_1 227 HHPHPIRCLRFLPNGSLVVGA 247
                 699***********8777644 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.21
                 EEESSSTEEEEEE CS
  PF00400.27  18 afspdgpllasgS 30 
                 ++sp g++l+s+ 
  MMETSP0890-20130614|7611_1 343 DVSPCGTFLCSCA 355
                 67999******96 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.022
                 SSSSEEEEEEESSSTEE CS
  PF00400.27  10 HtspVtcvafspdgpll 26 
                  ++ Vt+v+ sp+ +++
  MMETSP0890-20130614|7611_1 510 GSDIVTSVKLSPTANFV 526
                 6789********97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.80
# Mc/sec: 1833.21
//
Query:       MMETSP0890-20130614|7616_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1176.67
//
Query:       MMETSP0890-20130614|7619_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-11   42.0   0.0      9e-11   41.5   0.0    1.2  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   6.6e-15     9e-11       5      93 ..      82     196 ..      79     197 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 6.6e-15
                 --CT-EEEEEEEEEE...---EEEETTT........TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-.....................TTCCTTTS.TT-EEEEEEEE CS
  PF00254.23   5 akegdtVtvhyegkl.e.dgtvfdssys........rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYge.....................kglaggkippnatlvfevel 93 
                 ++  ++V ++ +g++   dg +f ss +         a+p+++++G+g +++g+eeg++g k++e r++++p + +Y                       k+     +  + t++f+v++
  MMETSP0890-20130614|7619_1  82 VTSSSIVLLEVTGRFlNlDGVKFYSSADnidssklnMAEPLKVQLGTGLLVPGIEEGIIGAKKNEIRRIIVPASRGYDLgsklepwptttlglnalnsvlKN-----ERRDGTILFDVKI 196
                 788899*********645799999994444455566*****************************************8766666666655555433322211.....3445777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.74
# Mc/sec: 647.66
//
Query:       MMETSP0890-20130614|7620_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-05   23.6   0.1    5.6e-05   23.3   0.1    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   4.1e-09   5.6e-05      19      93 ..      69     132 ..      51     148 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 4.1e-09
                 XX.----TTTTT--------TTT------------------S--TT--.STT-------S-TT.THHHH---HHH CS
  PF00504.16  19 glskdptlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeagglslptllalqillligflel 93 
                 g++          aE+ +GRv+M+a++ +l++el+t+ ++++ f++  +++e     lp+++ +  ++l g+l +
  MMETSP0890-20130614|7620_1  69 GFA--------LNAEVWNGRVSMMAFIWVLLQELITGKGVVTTFVQAKSLDEVI---LPAIIGASFFVLTGALTT 132
                 444........469*******************999876666555544454433...566655566666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 664.25
//
Query:       MMETSP0890-20130614|7623_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-72  243.0   1.9    5.3e-72  242.7   1.3    1.1  1  PF13598.1 Domain of unknown function (DUF4139)


Domain annotation for each model (and alignments):
>> PF13598.1  Domain of unknown function (DUF4139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.7   1.3   3.9e-76   5.3e-72       2     316 ..      55     424 ..      54     425 .. 0.82

  Alignments for each domain:
  == domain 1    score: 242.7 bits;  conditional E-value: 3.9e-76
   PF13598.1   2 elsyqvrnAsWsPlYdlrldt.ekkevtltykaevsQntGeDWndvaLtLstarpsrggsppelspwridlyrpepekrrareaapa................araaasaeasaaeadeeeaaaeeaavaeaaeveksgls....vtfkipgpvsvpsdgeahrvtiatetlpaeleyvavPkldeaAyltAevkntsglpll.pGkasifldgafVgksrlelvapgeefelsfGvddavrverkllkkkge.....tgli....skssrqtyeytitvtNlk.kepvtvtvrdqvPvSedeeikVelleps.............ep..........avdekdgilewelklapgetkeielkyeveyP 316
                  l+y+v+  sW+P+Yd+r+d+ +++++++ty++ v++ tGeDW++v+L+Lsta+ps g  pp + +++++   ++p ++++r++ ++                a+a++  +++ + +d  ++  + ++v+e+ae e++++     +tf+ip+ +++ sdg++h+v++ +++  + +++ + P l+++Ayl+A+++nts + ll + +a +f dgaf+++++l++vapg+++++++Gvd++v+ve++ lk++++     tgl+     k+sr ++ey +t++N+k +++v +t+ + +P+S+de+i Vel +p+             ++           +++ ++++ +  +l+p+ +k++ ++y+v++P
  MMETSP0890-20130614|7623_1  55 YLTYLVSRSSWKPSYDVRVDRgDSGSMEVTYYGIVTNATGEDWSEVKLSLSTASPSMGSVPPLPPTLEAKWDSKKPFRTQNRMMIKKesgppmiqmqsnmvipAQAMMNVAEEYSDEDSVDMDEPHETVEEEAEEEEKNIPpvsvSTFEIPRLATILSDGKEHKVQVNRFDAVPIFRHFITPHLEQRAYLQARATNTSNYVLLpSDRAAVFADGAFIANTKLKRVAPGDQLDVFLGVDEDVSVEHRCLKNTTKtgranTGLFgskeAKTSRLVKEYVTTIHNTKtQNAVSLTLVQLLPRSTDENISVELIQPKsapestslssaasSTfgigstsvgaVRNKFTNNIVISAQLPPKVKKDFHFEYHVTWP 424
                 699*****************9677***********************************9999999**999888866666666655556666677777766654444444444444456666667777777666666665455558******************************************************999567899****************************************965523455666677766778889***********9999**********************9984444444444444003333344443455889*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:00.75
# Mc/sec: 1389.89
//
Query:       MMETSP0890-20130614|7626_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:00.90
# Mc/sec: 1150.25
//
Query:       MMETSP0890-20130614|7632_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-18   64.5   0.0    8.1e-18   64.3   0.0    1.1  1  PF10294.4 Putative methyltransferase
    2.9e-07   30.9   0.1    4.9e-07   30.1   0.1    1.4  1  PF12847.2 Methyltransferase domain
    3.9e-05   23.2   0.0    5.5e-05   22.8   0.0    1.2  1  PF13489.1 Methyltransferase domain
    4.5e-05   23.7   0.1    7.6e-05   22.9   0.0    1.4  1  PF08242.7 Methyltransferase domain
     0.0012   18.1   0.0     0.0018   17.5   0.0    1.1  1  PF05175.9 Methyltransferase small domain
  ------ inclusion threshold ------
      0.042   13.7   0.2      0.052   13.4   0.1    1.3  1  PF13659.1 Methyltransferase domain
      0.044   13.6   0.1      0.094   12.6   0.0    1.5  1  PF10982.3 Protein of unknown function (DUF2789)
      0.062   12.3   0.0      0.081   11.9   0.0    1.1  1  PF03848.9 Tellurite resistance protein TehB


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   4.8e-21   8.1e-18       8     171 ..       3     155 ..       1     158 [. 0.83

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 4.8e-21
   PF10294.4   8 kieedtgn...svgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketk.ilvaykkrreaekkFfkll 171
                 +++ed++    ++++  W  ++ l+ +l ++        + +g++vlELG+G+Gl+   +a++  +a v  tD e  +   + ++++ + +++ + ++ +++W +e+    +++ ++D++la Dc+Y+e+  e+L + L+ ++++e +  +v+     ea  +F+ l+
  MMETSP0890-20130614|7632_1   3 HVQEDWHAdddGIAGLQWAGGMRLARFLDEE--------SWKGKRVLELGAGCGLTSCLLAAK--GAIVDCTDAEPSFAQATADLNA-QVLINCTLRIFAYHWSNEK----PTNDTYDVVLAGDCLYFEEHAEKLCQALEICVDTERTiAYVCGAVGVEAHASFIPLV 155
                 56666543334999*************9994........6889*****************999..99*********99988888888.44999999999****8877....567789*****************************9944556555577777777665 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   2.9e-10   4.9e-07       1      95 [.      36     124 ..      36     140 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.9e-10
   PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda..keelsllerfDavllkgltldallaldeprrvle 95 
                 kgkr+l+lG+G G+ s  la   +ga v+  D+ + s+++a +++ ++++  +++l+  +   ++e+   + +D+vl+++ +l  +++    +++++
  MMETSP0890-20130614|7632_1  36 KGKRVLELGAGCGLTSCLLAA--KGAIVDCTDAEP-SFAQATADL-NAQVLINCTLRIFAYhwSNEKPTNDTYDVVLAGD-CL--YFEE-HAEKLCQ 124
                 689******************..*********966.556666666.58899999998877745555555555******99.66..4444.2244444 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.2e-08   5.5e-05      14      91 ..      27     115 ..      20     140 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.2e-08
   PF13489.1  14 erllar.lkpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk............akqaqksqfdeed.......aaepagkfdlivarevleh 91 
                 +r+l+    +g+rvL++G+G G  + lla++g+  d+t  +ps+a+  +            +                   +++ ++++d+++a ++l+ 
  MMETSP0890-20130614|7632_1  27 ARFLDEeSWKGKRVLELGAGCGLTSCLLAAKGAivDCTDAEPSFAQATAdlnaqvlinctlR-----------IfayhwsnEKPTNDTYDVVLAGDCLYF 115
                 444444257899**********999999****9999******98765544444444433331...........03333333555778********99975 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.5e-08   7.6e-05       1      77 [.      41     114 ..      41     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.5e-08
   PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.ssfDvvvasnvlh 77 
                 Le+G+G G ++  l++k  ++ + ++D  ps+ ++++   a+     n  ++++a + +++++  +++Dvv+a ++l 
  MMETSP0890-20130614|7632_1  41 LELGAGCGLTSCLLAAK--GAIVDCTDAEPSFAQATADLNAQVLI--NCTLRIFAYHWSNEKPTnDTYDVVLAGDCLY 114
                 8****************..99999*********444444444444..4466666666666666679******988774 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06    0.0018      22     103 ..      25     108 ..      21     111 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1e-06
                 HHHHHS-TT..------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----...--EEE-STTTT--..--BS-EE CS
   PF05175.9  22 lLletlpkk..lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen..vevlasdlleeve.ekkfdliv 103
                  L++ l+++  ++++vl+lG+G G+ ++ la+++    v+++D++  + + a a l+a+ l n  ++++a    +e + ++ +d+++
  MMETSP0890-20130614|7632_1  25 RLARFLDEEswKGKRVLELGAGCGLTSCLLAAKGAI--VDCTDAEP-SFAQATADLNAQVLINctLRIFAYHWSNEKPtNDTYDVVL 108
                 588889998888899*****************9888..99999975.3444444555444444446666666655555467777775 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     3e-05     0.052       1      43 [.      37      78 ..      37     150 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3e-05
   PF13659.1  1 gdrvldpgcGsGtfllaalellaalllgvEldpraaalaarnl 43
                g rvl++g+G+G +   +++ + a + +++  p  a+++a   
  MMETSP0890-20130614|7632_1 37 GKRVLELGAGCGLTSCLLAAKG-AIVDCTDAEPSFAQATADLN 78
                689*******************.*********99999888432 PP

>> PF10982.3  Protein of unknown function (DUF2789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.5e-05     0.094      41      67 ..     148     174 ..     145     176 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.5e-05
                 T-TTS-HHHHHHHHHHHHS--TTHHHH CS
   PF10982.3  41 eApfWteaQaafLkealeeDadWaevv 67 
                  A+f    Q++fL e+ ++D +W evv
  MMETSP0890-20130614|7632_1 148 HASFIPLVQRSFLVEEHKSDGTWDEVV 174
                 58888889*****************98 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.8e-05     0.081      32     108 ..      38     117 ..      33     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.8e-05
                 --EEE-------HHHHHHH----EEEEES-HHHHHHHHHHHHHTT-T..EEEEE--G.GG------BSEEEEES-GGGS- CS
   PF03848.9  32 gkaldlGcGqGrnslflsllgydvtavdkneasiailqeiaekenld..lkaalydi.naasldeeydfilstvvlmflq 108
                  ++l+lG G G  s  l+++g  v++ d + +  +   ++ ++  ++  l++ +y   n+   ++ yd +l+   l f +
  MMETSP0890-20130614|7632_1  38 KRVLELGAGCGLTSCLLAAKGAIVDCTDAEPSFAQATADLNAQVLINctLRIFAYHWsNEKPTNDTYDVVLAGDCLYFEE 117
                 579**************************9999999999988876663377777775377889999****9988888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.73
# Mc/sec: 587.60
//
Query:       MMETSP0890-20130614|7634_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.84
# Mc/sec: 539.18
//
Query:       MMETSP0890-20130614|7631_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-103  344.8   0.0   9.2e-103  342.7   0.0    2.0  2  PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
    1.8e-37  128.4   0.0    3.7e-37  127.4   0.0    1.5  1  PF02779.19 Transketolase, pyrimidine binding domain
    5.2e-24   84.4   0.1    1.7e-23   82.8   0.0    1.8  2  PF02780.15 Transketolase, C-terminal domain
    9.6e-06   25.1   0.3    0.00013   21.5   0.1    2.4  2  PF02775.16 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
    1.1e-05   24.3   0.0      0.079   11.6   0.0    3.0  3  PF00456.16 Transketolase, thiamine diphosphate binding domain
    1.2e-05   24.0   0.0    2.4e-05   23.0   0.0    1.4  1  PF00676.15 Dehydrogenase E1 component
  ------ inclusion threshold ------
      0.093   11.9   0.2       0.17   11.1   0.2    1.3  1  PF04391.7  Protein of unknown function (DUF533)


Domain annotation for each model (and alignments):
>> PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.7   0.0  4.7e-106  9.2e-103       1     270 []      31     317 ..      31     317 .. 0.96
   2 ?   -1.1   0.0      0.33   6.4e+02     210     252 ..     579     621 ..     561     637 .. 0.58

  Alignments for each domain:
  == domain 1    score: 342.7 bits;  conditional E-value: 4.7e-106
   PF13292.1   1 LekikspedlkklseeelkelaeeirefliekvsktggHlgsnLgvvEltvalhyvfdspkDklvwDvgHQaYvhKiLtgRkekfetlrqkgglsgfpkreEseyDafevgHsstsisaalGlakardlkg.ekekvvaviGDgaltgGmafealnnagelkkklivilNdNemsise..........nvgalskylaklreskayeklkkevkkvlkkl.kklkelakkleeslkel.vp.nlfeelglkyigpidGhdleelikvleevkkl...kgpvllhvvt 270
                 L+ ++ p+d+k+++ +elk+l++e+r ++i++vsktggHlgs+Lgv+El+valhyvfd+p+D+++wDv+HQ+Y+hKiLtgR++++ tlrq+gglsgf+k++EseyD+f++gHsstsisaalG++ +++lk+ +k++++a+iGDga+tgGma+ea+nna+ l++++i ilNdN +++ +          + gals+y ++l +s+ ++++++ +k + + + ++++ + +k++e ++ + +  +lfeelg+ y+gp+dGhdle+li +l+++++    ++pvllh++t
  MMETSP0890-20130614|7631_1  31 LDAVDVPADMKRCTMAELKQLSHELRWEVIRQVSKTGGHLGSSLGVIELSVALHYVFDAPEDRIIWDVSHQCYPHKILTGRRSRMPTLRQQGGLSGFQKMAESEYDCFGAGHSSTSISAALGMSIGKKLKRkSKNNCIAIIGDGAITGGMAYEAMNNANYLDARMITILNDNGQVSLPtgtpsaggviPSGALSAYTSRLLSSQPFADVRNVAKGLSNLMpPEMQAINAKIDEYARGIvTGgTLFEELGFYYVGPVDGHDLENLIPILQNLRDSpndNKPVLLHIKT 317
                 78999***************************************************************************************************************************9874689****************************************9999***********************************99997779999999**********4447******************************9655588******87 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.33
   PF13292.1 210 kklkelakkleeslkelvpnlfeelglkyigpidGhdleelik 252
                 ++l+ +++ ++e  +++ +   +  + +++ p dG+ +++l k
  MMETSP0890-20130614|7631_1 579 TRLAAALEAAKEIEQQNPDISVTVADARFMKPLDGNLVKSLAK 621
                 4444444444444444433556667777777777777777765 PP

>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.0   1.9e-40   3.7e-37       3     173 ..     356     516 ..     354     519 .. 0.97

  Alignments for each domain:
  == domain 1    score: 127.4 bits;  conditional E-value: 1.9e-40
                 EEHHHHHHHHHHHHHCC-TTEEEEESS-HHHHTTHHHHHHEGG--EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG..HHGGHHHHHHHHHHTT---E.EEEEEE--------TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SS CS
  PF02779.19   3 iawrkaeaealaellkedpevvllgaDvargtfsvrkgllhdqgegrvidsgisEqamlgfavGaalagpllviweaqfgdFangAqiyadqairsgeakgklpvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkq 173
                 ++++ ++a+ l +++++d +vv ++a++ +gt+ +++g+++++   r +d+gi+Eq++++fa+G+a++g  ++++++++++F++    + ++++++++  +klpv  +++r+++ vg dGp+h++  ++++l ++p++ +++P+d+ ++k+++ +a   + + P+v+r+p++
  MMETSP0890-20130614|7631_1 356 PSYTSVFAHELIKIAEDDRDVVSITAAMPGGTGMDIFGKRFPK---RTYDVGIAEQHAVTFAAGLAVEG--IKPFCCIYSTFMQ----RGYDQLVHDVVIQKLPVRfILDRAGL-VGNDGPTHHGSFDLSYLGCLPNIVIMAPADEIDLKNMIATAHSID-NMPSVVRYPRG 516
                 688999*************************************...***********************..9************....**************************.*****************************************9964.79*******97 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.4   4.6e+03      17      33 ..     177     193 ..     158     198 .. 0.54
   2 !   82.8   0.0   8.5e-27   1.7e-23       8     124 .]     568     687 ..     563     687 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.4
                 ESTHHHHHHHHHHHHHT CS
  PF02780.15  17 yGsmveealeAaeeLak 33 
                 +G m +ea++ a+ L +
  MMETSP0890-20130614|7631_1 177 TGGMAYEAMNNANYLDA 193
                 56667777776666655 PP

  == domain 2    score: 82.8 bits;  conditional E-value: 8.5e-27
                 TTECEEEEEESTHHHHHHHHHHHHHTT..T-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHH.HSGGG-SSEEEEEEEESSSHHSS.HHHHHHHS--HHHHH CS
  PF02780.15   8 egkdvtivayGsmveealeAaeeLake..gisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalae.egftkldapvrrvggpdvpipha.palelaylgltaeki 124
                 + ++v+i++ G+ +  aleAa+e++++   is++v d+r++kPlD +++++++k+ + l+++ee++ i G+++ v+++l+    +++ ++  r +++pd++i+ a + ++++++gl+a+++
  MMETSP0890-20130614|7631_1 568 KRNKVAILTIGTRLAAALEAAKEIEQQnpDISVTVADARFMKPLDGNLVKSLAKENDVLITMEENS-ILGFASYVMQFLSLnGLLDDGNLIFRPMTLPDTFIEAAtQHQQYDEAGLNAKHV 687
                 6689***********************99************************************9.**************888999******************************9987 PP

>> PF02775.16  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   6.4e-08   0.00013      24      90 ..     137     210 ..     123     246 .. 0.77
   2 ?    0.7   0.0      0.16   3.2e+02      28      87 ..     575     637 ..     565     643 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.4e-08
                 --SS-----HHCCCHHHCC....T.STTS-EEEEE----..TTTTGGGHHHHHHCT--EEEEEEE-SB---HHH CS
  PF02775.16  24 sgglgtmGyglpaAiGakl....a.kpdrevvaivGDGg..flmilqelatavrrnlpitvvvlnNegygmtgg 90 
                 + g g+   +++aA+G+++    + k +++ +ai+GDG+    m  +++ +a + ++ +++++ +N+   +  g
  MMETSP0890-20130614|7631_1 137 CFGAGHSSTSISAALGMSIgkklKrKSKNNCIAIIGDGAitGGMAYEAMNNANYLDARMITILNDNGQVSLPTG 210
                 45566666677777777775543324578*********9544566899999999999*********98776555 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.16
                 -----HHCCCHHHCC..TSTTS-EEEEE----TTTT.GGGHHHHHHCT--EEEEEEE-SB--- CS
  PF02775.16  28 gtmGyglpaAiGakl..akpdrevvaivGDGgflmi.lqelatavrrnlpitvvvlnNegygm 87 
                  t+G  l+aA+ a+    +++ ++ ++v D  f+      l+ +  ++ ++++ +  N+++g+
  MMETSP0890-20130614|7631_1 575 LTIGTRLAAALEAAKeiEQQNPDISVTVADARFMKPlDGNLVKSLAKENDVLITMEENSILGF 637
                 68899999999888854355678999999******9668999999999999999999999987 PP

>> PF00456.16  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.15     3e+02       4      39 ..      50      84 ..      47      93 .. 0.82
   2 !   11.6   0.0     4e-05     0.079     128     187 ..     148     207 ..     138     217 .. 0.82
   3 !    8.3   0.0    0.0004      0.79     213     262 ..     285     337 ..     273     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHHHHT---HHHHHTTHHHHHHHH CS
  PF00456.16  4 kavnaiRvlavdavekaksGHPgaplglaeiaevlf 39
                ++ + +R  ++ +v+k  +GH g++lg+ e+  +l+
  MMETSP0890-20130614|7631_1 50 QLSHELRWEVIRQVSKT-GGHLGSSLGVIELSVALH 84
                56677899999999886.69**********999886 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4e-05
                 HHHHHHHH----SS--S--EEEEE----TT---HHHHHHHHHHTT-TTEEEEEEE-S--- CS
  PF00456.16 128 ekalaatynkpgfdivdhyvyvllgDgclmEGvssEaislagvlkLgkLialyDdNkisi 187
                  +al+++  k+   ++++   +++gDg ++ G+++Ea++ a  l    + +l D+ ++s+
  MMETSP0890-20130614|7631_1 148 SAALGMSIGKKLKRKSKNNCIAIIGDGAITGGMAYEAMNNANYLDARMITILNDNGQVSL 207
                 567788888999999999***********************9998655555556667775 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0004
                 EE----HHHHHHHHHHHCCS..TTS-EEEEEE-------T.TTTT-GGG---- CS
  PF00456.16 213 vedgedveeiakAieeAkae..kdkPtlikvktviGfgsp.nkegkedvHGap 262
                   dg+d+e++   +++ + +   +kP l+++kt +G+g p +++ + ++HG +
  MMETSP0890-20130614|7631_1 285 PVDGHDLENLIPILQNLRDSpnDNKPVLLHIKTEKGMGYPpAMRASDKMHGVA 337
                 469999999998888887652268**************86267888999*976 PP

>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   2.4e-05      97     162 ..     137     203 ..      58     211 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-08
                 ----S--SHHTTHHH--HHHHH.H------EEEEE----TTSHHHHHHHHHHHHCT--EEEEEEE-S CS
  PF00676.15  97 lggngivgaqvplvaGialaak.yegkkevailliGDGatnqGqffealnlAalwklpvifvveNNq 162
                   g g +++  + + G+ +  k  ++ k+ +i++iGDGa   G ++ea+n A+  ++ +i + + N+
  MMETSP0890-20130614|7631_1 137 CFGAGHSSTSISAALGMSIGKKlKRKSKNNCIAIIGDGAITGGMAYEAMNNANYLDARMITILNDNG 203
                 233344444444555999988866788999*********999******************9999885 PP

>> PF04391.7  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   8.7e-05      0.17      11      54 ..     146     189 ..     132     216 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.7e-05
   PF04391.7  11 alaggllglllggkkarklggk.alklGglAalgglAykayqdwq 54 
                 ++  ++lg+ +g+k +rk + + ++ +G  A+ gg+Ay+a+++ +
  MMETSP0890-20130614|7631_1 146 SI-SAALGMSIGKKLKRKSKNNcIAIIGDGAITGGMAYEAMNNAN 189
                 44.78999999*999998887725668999***********9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:01.08
# Mc/sec: 1562.07
//
Query:       MMETSP0890-20130614|7636_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-101  339.3   0.1   1.5e-101  338.9   0.1    1.1  1  PF00268.16 Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> PF00268.16  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.9   0.1  1.1e-105  1.5e-101       6     281 .]      59     338 ..      56     338 .. 0.98

  Alignments for each domain:
  == domain 1    score: 338.9 bits;  conditional E-value: 1.1e-105
                 --TT-T..TS-SSHHHHHHHHHHHHT---GGGS-GGGGHHHHHT.S-HHHHHHHHHHHHHHHTTHHHHHHHHHHTHHCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS.-HHHHHHHHHCCCC-TTCHHHHHHHHHHCCSSSC.HHHHHHHHHHHHHTTTT--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHTSHHHHHHHHHHHHHHHHHHHHHHHTTS-GGG....HHHHHHHHHHHHHHHHHH-----SS-TTTS-TTCH CS
  PF00268.16   6 enkkrf..ykiehpdilelykkavanrWlaeevdlskDikdvek.LseaerefykfvlaflaaaddlvnenlveslsaeveikdiehyygeqeaiEnvHsevYsliletlikdekerealvaaieedpaikkkvqwllakvadaes.laeklvafilvEgifFsssFasiaylkkrgllpglcqsnelIsRDEalHtsaacllynnllkkekpeekrieellreaveieiefieakapvkvlllnveaikqyvefvAdrllvelglkklfkvenadvpla 281
                 ++++rf   ++ + di+++ykka+a++W+aeevdl+ D+ ++++ L ++er+f k++laf+a +d++v enl+e+l+ ev+ ++++++y++q+aiE+vH e+Ysl+let+++d++er++l+ a ++ p+ik+k++w++++ +++++ +a++lva++ vEgifFs+sF+++++l+krgllpgl ++nelIsRDE+lH+++aclly++l+ + +++ ++ + ++r+ave+e +fi+a++pv+++++n + ++ yve+vAdrll +lg  kl++++n++++++
  MMETSP0890-20130614|7636_1  59 RSASRFslLPLRDIDIWRMYKKAEASFWTAEEVDLQADVAHWQNqLDDDERHFLKHILAFFASSDGVVMENLMERLLCEVTLPEARYFYAFQTAIEAVHQETYSLLLETYVEDPQERAQLFIAHQTSPTIKNKADWAKRWTQSNDAsFAKRLVAYACVEGIFFSGSFCAVFWLRKRGLLPGLGFANELISRDEGLHCDFACLLYDKLQPELRLSDAQAQAIVRQAVEVERHFITAALPVSLIGMNDKLMSRYVEYVADRLLLSLGHPKLYHTTNPFDWME 338
                 56666666889999*****************************99*************************************************************************************************99988*************************************************************99*******************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.49s 00:00:01.12 Elapsed: 00:00:01.08
# Mc/sec: 923.04
//
Query:       MMETSP0890-20130614|7635_1  [L=1628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-35  122.5   0.0    2.7e-35  121.9   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)
    1.3e-14   53.8   0.0    3.6e-14   52.4   0.0    1.7  1  PF00069.20 Protein kinase domain
    1.5e-10   40.5   3.0    0.00026   20.5   0.1    3.6  3  PF13418.1  Galactose oxidase, central domain
    5.8e-05   22.8   0.1       0.17   11.7   0.0    3.0  3  PF13854.1  Kelch motif
    9.3e-05   21.5   0.0    0.00018   20.6   0.0    1.4  1  PF07714.12 Protein tyrosine kinase
    0.00044   20.2  10.3     0.0012   18.8   0.5    4.4  4  PF13415.1  Galactose oxidase, central domain
  ------ inclusion threshold ------
      0.023   14.7   0.2        5.1    7.3   0.0    3.5  3  PF13964.1  Kelch motif
      0.062   12.7   0.0        2.2    7.7   0.0    2.6  2  PF01344.20 Kelch motif


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   1.6e-38   2.7e-35       5     314 ..    1304    1626 ..    1300    1628 .] 0.85

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 1.6e-38
                  HHHT-TT---EESSTT---EEE-TT-......----TTHHHHHHH-------TTT--------B-HHHHHHHT........T----CCHHHTT-HHHHHHHHHHH..HS--GG...GT-BSE.E.EEE----EEE..........EES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS-......HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----TTSHHHHHHHHHHHTS-.HHHHHHHHHHH----S------TT----EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.---- CS
  PF00632.20    5 kellnpklglfyvyessgllypnkplsrdsdleessndnlklfkflGkligkaiyegilldlpfsraflkfll.......lgkkvtledleeidpelanslkellelessteavedlaltFt.ieedkkedeiel..........velipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfsevip......tealklftpeelellicGsdklidvedlrrnteydggynansptienlweilkefs.peerrlfLkFvTGssrlPlgGfaelhpkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFe 314 
                  + +ln + glf+ ++ ++ l p++p   +s++ +++ + l+  + +G+++  a yeg+ ++++++++++kfl         g   +l+dl+++dp+l  sl+++l  +  + +  d +l+F  i+ ++++ ++e                +G+  pVt++nk++++ l v + l+    + l+a+ +Gf++ +       + +lkl++ ++ +ll+  +d+ ++ e + + +++  g+ ++s   e l + +++fs  +  r+fL F+TGs+++P  G   l  ++++++    + +LP+a+TCf +L++pdY+++ ++  k ++A++e+ ++F+
  MMETSP0890-20130614|7635_1 1304 RGVLNDEGGLFE-SSGGQVLLPRPP---PSKNDTNRDAFLAKMHAIGRALVTACYEGCGVPSTLAPSIFKFLArgsrhvaAGDARALRDLQKFDPSLGASLENMLASVPPDGS-FDWGLDFDdITGTEEDRDHEDddqrafphssASSPRKGRPRPVTEANKHQFVVLKVRWILTGCRVESLNALGQGFHTALSelspeaSPLLKLLSSTDWRLLLTADDN-LTPERVLDTLDFV-GFPKTSIIPEALKRTIESFSnTDSLRRFLVFTTGSPTIPNDGRD-L--RIQVRCLP-LSGALPVAHTCFFHLDIPDYEDEGTFITKFTMALHEC-SSFD 1626
                  556777779994.444444444433...233345556788999******************************8888876555588*******************77777766.799****998877766444445666777653344578*************************************998887777788899******************.9***********9.799***************6615789***************9986.7..9*****99.8999********************************9.7897 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.1e-17   3.6e-14      19     260 .]     925    1189 ..     918    1189 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.1e-17
                  EETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEE................................STEEEEEEE--SC-EHHHHHH......................HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
  PF00069.20   19 kkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfee................................kdelylvleyveggdlfdllk......................kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260 
                  ++k tg+ v +K+   +e+++++ +++  E+  l  l +H+ + +  +v++                                                     +                      +e   + ++++ +a+qil++l  lHs++++H  L p  +Ll+++++  +    la  +  ++++l++  +  +++APE+l +++  t+++D++s+G +l  l  + + +++e +e+q+++ ++  +     +     + +e++k+l++ l ++dp+ R++a++++ hp++
  MMETSP0890-20130614|7635_1  925 VDKLTGEAVLLKAYALDEKSDEEWINHEAEIDALLALpRHEALATPRAVVTAnwapvlrldantlnvirakfnkdasatthkeaI-------------------TftgspmlylefpfpetdgvgwaTEAAREPWHVQAVARQILTALIVLHSREVVHAHLTPCCVLLSHRHTKAL----LATRHLLRGSSLKKEDSLDDFVAPEILSGESAPTTASDMYSFGATLRWLHREAPGVRDEPKEEQRRRQQSSSS----GS-----QPDEDMKHLLSVLTATDPDLRPSAADAILHPYF 1189
                  6677888888888888888888888888888888888888888888888877888888887444444444444444443333330...................244444444445555444444445777799***********************************8888887....79999*****************************************999999999998844444333322222....22.....22489**************************98 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3     8e-06     0.014       1      48 [.       8      57 ..       8      57 .. 0.91
   2 !   20.5   0.1   1.5e-07   0.00026       1      49 []      57     104 ..      57     104 .. 0.86
   3 ?    4.6   0.0     0.014        24       5      25 ..     108     127 ..     107     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8e-06
   PF13418.1  1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl....pslP 48
                pRa h+a+a +++  yl GG ++ g + nD++  +++ ++W rl    p+lP
  MMETSP0890-20130614|7635_1  8 PRAMHAACA-RGNAAYLSGGSGPRGDCKNDVWA-STDGGRWIRLcelaPWLP 57
                8*******8.5789******************9.899****99988888887 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.5e-07
   PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstn.tWtrl.pslPs 49 
                 pR gh++va  ++ l+l GGe+ d  +lnD++    +++ +Wt +  +lP+
  MMETSP0890-20130614|7635_1  57 PRRGHTLVAS-NKLLLLAGGETADEHSLNDCWS--SNDGaSWTMVrFDLPP 104
                 8*********.89******************98..5566568888777775 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.014
   PF13418.1   5 hsavavpdgrlylfGGenedg 25 
                 h+a +++ ++l+lfGG +++g
  MMETSP0890-20130614|7635_1 108 HAALPTK-DGLLLFGGSTSSG 127
                 6777774.79********998 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0024       4.2       3      35 ..       7      38 ..       7      40 .. 0.84
   2 !   11.7   0.0    0.0001      0.17       4      35 ..      57      87 ..      54      90 .. 0.95
   3 ?   -2.1   0.0       2.2   3.7e+03      17      26 ..     117     127 ..     113     133 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0024
   PF13854.1  3 ppRarhcavvvsgniylyGGksgnddsvsddvy 35
                +pRa h+a++ ++  yl GG + ++++  +dv+
  MMETSP0890-20130614|7635_1  7 SPRAMHAACARGNAAYLSGGSG-PRGDCKNDVW 38
                69******************99.5665556665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.0001
   PF13854.1  4 pRarhcavvvsgniylyGGksgnddsvsddvy 35
                pR++h  v+ +  ++l GG ++ d+++++d +
  MMETSP0890-20130614|7635_1 57 PRRGHTLVASNKLLLLAGGETA-DEHSLNDCW 87
                9********************6.*******98 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.2
   PF13854.1  17 iylyGGksg.n 26 
                 ++l+GG ++ +
  MMETSP0890-20130614|7635_1 117 LLLFGGSTSsG 127
                 689****9753 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07   0.00018      95     253 ..     999    1181 ..     923    1186 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1e-07
                  T.................................GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HH CS
  PF07714.12   95 k.................................ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfk 253 
                                                    ++ + +  ++  +a qi  ++  L+s+++vH  L+   vLl++++ +  ++   L r         + ++++    ++apE+l+ ++  t++sD++sfG +l  +   +   + +  +ee  ++ +++   ++p    e++++l++   +++p+ Rp+ +
  MMETSP0890-20130614|7635_1  999 DasatthkeaitftgspmlylefpfpetdgvgwaTEAAREPWHVQAVARQILTALIVLHSREVVHAHLTPCCVLLSHRHtKALLATRHLLRGS-------SLKKEDSLDDFVAPEILSGESaPTTASDMYSFGATLRWLHREA-PGVRDEPKEEQRRRQQSSSSGSQP---DEDMKHLLSVLTATDPDLRPSAA 1181
                  3555555555555555555555555555555553334444445667899***************************87747777777777766.......33444556689******9776489***********98777744.444444555544444555555555...47888888888888999999865 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.6      0.24   4.1e+02      38      48 ..       6      16 ..       1      17 [. 0.82
   2 !   18.8   0.5   7.1e-07    0.0012       1      48 [.      18      65 ..      18      66 .. 0.88
   3 ?    2.3   0.0       0.1   1.8e+02       4      36 ..      70     101 ..      67     111 .. 0.72
   4 ?   -0.1   0.0      0.58     1e+03       2      15 ..     115     128 ..     114     135 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.24
   PF13415.1 38 PppRaghtata 48
                ++pRa+h+a+a
  MMETSP0890-20130614|7635_1  6 WSPRAMHAACA 16
                69********7 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 7.1e-07
   PF13415.1  1 gdelyvfGGlgddgqtrlndvyvldldtntweei...gslPppRaghtata 48
                g+ +y+ GG+g +++++ ndv+  ++d + w ++   +++  pR+ght++a
  MMETSP0890-20130614|7635_1 18 GNAAYLSGGSG-PRGDCKNDVWA-STDGGRWIRLcelAPW-LPRRGHTLVA 65
                799********.7**********.7777899977787888.7******986 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.1
   PF13415.1   4 lyvfGGlgddgqtrlndvyvldldtntweei.gs 36 
                 l++ GG++ +    lnd++  +    +w+ +  +
  MMETSP0890-20130614|7635_1  70 LLLAGGET-ADEHSLNDCWSSNDG-ASWTMVrFD 101
                 7899****.568899****97765.566655544 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.58
   PF13415.1   2 delyvfGGlgddgq 15 
                 d l++fGG++ +g+
  MMETSP0890-20130614|7635_1 115 DGLLLFGGSTSSGN 128
                 5699*****95443 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.18   3.1e+02       1      31 [.       8      38 ..       8      49 .. 0.86
   2 ?    7.3   0.0     0.003       5.1       1      43 [.      57      98 ..      57     105 .. 0.80
   3 ?    1.0   0.0      0.28   4.8e+02       3      27 ..     106     131 ..     103     139 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.18
   PF13964.1  1 praghsavsvggkiyifGGytnsgkylndvl 31
                pra h+a++ g+  y+ GG++  g   ndv+
  MMETSP0890-20130614|7635_1  8 PRAMHAACARGNAAYLSGGSGPRGDCKNDVW 38
                6899****************97677777776 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.003
   PF13964.1  1 praghsavsvggkiyifGGytnsgkylndvlvydpetksWeql 43
                pr gh++v+ ++ + ++GG t+++ +lnd ++ + +  sW+++
  MMETSP0890-20130614|7635_1 57 PRRGHTLVASNKLLLLAGGETADEHSLND-CWSSNDGASWTMV 98
                699*******************8667777.5555567788876 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.28
   PF13964.1   3 aghsavsvggkiyifGGytns.gkyl 27 
                 + h+a    +++ +fGG+t s +k+ 
  MMETSP0890-20130614|7635_1 106 HLHAALPTKDGLLLFGGSTSSgNKAK 131
                 455565667789******99875554 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.074   1.3e+02       1      31 [.       8      38 ..       8      39 .. 0.88
   2 ?    7.7   0.0    0.0013       2.2       1      31 [.      57      87 ..      57      88 .. 0.97

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.074
                SSSCEEEEEETTEEEEE---BSTTS-TTEEE CS
  PF01344.20  1 arssagvvvldgkiYviGGrdgdtnalnsVe 31
                +r+ +++++ ++  Y  GG+ + + + n+V+
  MMETSP0890-20130614|7635_1  8 PRAMHAACARGNAAYLSGGSGPRGDCKNDVW 38
                799****************999777777776 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0013
                SSSCEEEEEETTEEEEE---BSTTS-TTEEE CS
  PF01344.20  1 arssagvvvldgkiYviGGrdgdtnalnsVe 31
                +r +++ v+ +  +   GG + d+++ln+++
  MMETSP0890-20130614|7635_1 57 PRRGHTLVASNKLLLLAGGETADEHSLNDCW 87
                89***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.13u 0.39s 00:00:02.52 Elapsed: 00:00:01.63
# Mc/sec: 2393.42
//
Query:       MMETSP0890-20130614|7638_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-09   35.7   0.0    6.2e-09   35.3   0.0    1.2  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
      0.052   12.4   0.0      0.064   12.1   0.0    1.0  1  PF11602.3  ATPase P4 of dsRNA bacteriophage phi-12


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     9e-13   6.2e-09     139     190 .]       1      52 [.       1      52 [. 0.99

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 9e-13
                 EE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
  PF00227.21 139 iGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                 +Gsgs aa++++e  y++++++ +a+el++ a+   + +d  sg+nv++a+i
  MMETSP0890-20130614|7638_1   1 MGSGSLAAMSVFETGYRDNMDEADAIELVKDAIFGGIFNDLGSGSNVDIAII 52 
                 7*************************************************97 PP

>> PF11602.3  ATPase P4 of dsRNA bacteriophage phi-12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.3e-06     0.064     225     310 ..      20     105 ..      16     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.3e-06
                 SS-STTHHHHHHHHHHS-SEEEEE-S----EEEEEE--..--.......--EEEEEE-EE---TT--EE----------BE-HHHHTT CS
   PF11602.3 225 msdddkvelvyeavaassaglvvvadadvvsqtltRtg..eGrifsGeplardthtletdepehskltehtskasraklesgsvdkdD 310
                 m ++d +elv++a+        + + ++v    ++Rt   +  if G   + dt+ l  ++ +  +l+ +++ +++   + ++ d+ D
  MMETSP0890-20130614|7638_1  20 MDEADAIELVKDAIFGGIFND-LGSGSNVDIA-IIRTAqaKAEIFRGFRKPNDTSILRSSYARPVNLKPPSGATTVLSTQVETFDTTD 105
                 778999*******99887654.3444554444.4488612567******************************999999988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.52
# Mc/sec: 502.31
//
Query:       MMETSP0890-20130614|7641_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-16   57.9   0.4    8.9e-16   57.7   0.3    1.1  1  PF03124.9 EXS family


Domain annotation for each model (and alignments):
>> PF03124.9  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.3   6.5e-20   8.9e-16     274     346 .]       3      71 ..       1      71 [. 0.90

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 6.5e-20
   PF03124.9 274 flLRkklllpkkviYylaividlilRftWilklsnerlstiseselgvfllallEvlRRwiWvffRvEnEhvk 346
                 ++L ++ l+p  +iY la++ d ilR+ W++++s+e+ + ++  + +++ll + E+lRR++W +fR+E Eh+k
  MMETSP0890-20130614|7641_1   3 WGLPRHGLFPF-WIYGLAVITDAILRLGWAIYVSPEQNV-LQ--QHVILLLGAAEILRRFMWAVFRIEYEHLK 71 
                 67888888888.***********************7665.66..68999**********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.64
# Mc/sec: 602.83
//
Query:       MMETSP0890-20130614|7639_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   12.4   0.1       0.23   11.2   0.0    1.6  1  PF10298.4 Sporulation Regulator WhiA N terminal
       0.13   10.7   0.0       0.22    9.9   0.0    1.3  1  PF05830.6 Nodulation protein Z (NodZ)


Domain annotation for each model (and alignments):
>> PF10298.4  Sporulation Regulator WhiA N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.4e-05      0.23      26      68 ..     527     569 ..     518     583 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.4e-05
   PF10298.4  26 vlevqtenaaiARriykllkelYgieaellvrkknklkknnvY 68 
                  l v t+ a++A  +++  k l+g+e++ + + + +l +n+ Y
  MMETSP0890-20130614|7639_1 527 ALFVATDDAQVAIEVIRNAKSLFGLESKAVFVANAQLDRNKLY 569
                 57789************************************99 PP

>> PF05830.6  Nodulation protein Z (NodZ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.2e-05      0.22     152     244 ..     460     554 ..     447     578 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.2e-05
                 HHHHH.HHHHHHHHT---EEE-EEE--------------.-HHHHHHHHHHHHHHHHHHTS.--SS-EEEEEEES-HHHHHHH----SSEE----- CS
   PF05830.6 152 eirar.idaiyqehfegksviGvhvrhGnGedildhapy.wadeelalrqvataireakal.shakpvkvflctdsakvldqlsgkfpdllavpke 244
                 +ir r +d++y++ f  + v+G+hvr G+   i   a+    ++ +  + +at   + +++ ++     +f+ td a+v  ++ ++   l+ ++ +
  MMETSP0890-20130614|7639_1 460 NIRGRpLDQLYNDSFPRRKVLGLHVRRGDTC-IEGGARElKRHKGRVCDDLATYATSVRRMiAKYGFNALFVATDDAQVAIEVIRNAKSLFGLESK 554
                 45554489******************99753.2222222022233333333333333333303333445788999999998888888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.38s 00:00:01.37 Elapsed: 00:00:01.00
# Mc/sec: 1536.06
//
Query:       MMETSP0890-20130614|7637_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.90
# Mc/sec: 95.85
//
Query:       MMETSP0890-20130614|7640_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-36  123.2   3.5    8.5e-36  123.2   2.4    1.7  2  PF02854.14 MIF4G domain
      1e-10   41.1   0.0    3.4e-10   39.5   0.0    2.0  1  PF02847.12 MA3 domain


Domain annotation for each model (and alignments):
>> PF02854.14  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   2.4   1.2e-39   8.5e-36       1     209 []     274     505 ..     274     505 .. 0.93
   2 ?   -3.4   0.0      0.69   4.7e+03      43      60 ..     730     747 ..     727     748 .. 0.87

  Alignments for each domain:
  == domain 1    score: 123.2 bits;  conditional E-value: 1.2e-39
                 HHHHHHHHHHHHSTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHST...........HCHHHHHHHHHHHHHHCH.............HCCCHHH.HHHHHHHHHHHHHHHHHCCCTSB-H-HHHHHHHHHHHCCCCHCCHCHHHHHHHHHHHHHHH---HCC......HHCSSTCHHHHHHHHHHHHHCT....SSSSHHHHHHHHHHHHHHHCC CS
  PF02854.14   1 lkkvkgilnklskdnfevlidellklaqdldknelkevinlifekaveepsfiplyarliaklnskfp...........qnFrilllnklqeefekry..........leneleeee.dgnrrrrlglvrFlgelfklkmltskilldvlkelleqvtketappqnleeieilltlLttiGktle......nneklkkeldeiferiqkiledat.rqelssrvrfmlkdlielkknk 209
                 lkk k++lnkl+ ++f+ l de++   +++ + +    i+li++ka  e +f++ ya+l+ k ++              + Fr+ ll ++q efe++            + e+ e++ ++ r++ +g + F+g l+kl++l + +++++++el+ + ++     ++ e+ie+l++l+t+iGk+l+       ++++ ++++ +f++i+++  +a+ +++l+ r+r++l dl+el++n+
  MMETSP0890-20130614|7640_1 274 LKKAKSLLNKLTVEKFDRLSDEFVGMEWNS-EKLVAGAIDLIVDKAQRETHFVQIYAELCVKFAAVPLlslgesnekgsKQFRRMLLLRCQAEFERDPeilrneieqiSDPEIKENRiAQIRKCYIGHMFFIGALYKLELLREGVMYSCIEELFGDPDE-----PDAEKIECLAKLFTSIGKKLDlaalesGKKESQRRMKAYFKQIKRLATNANnDNKLDTRIRYLLRDLYELREND 505
                 5899**************************.9****************************9988755589**************************99********7744444444425677888**********************************.....88************************9999999**************************************996 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.69
                 HHHHHHSGGGHHHHHHHH CS
  PF02854.14  43 fekaveepsfiplyarli 60 
                  +ka+ + +f+p++++l+
  MMETSP0890-20130614|7640_1 730 NAKATIREKFAPMLVQLA 747
                 67999999********97 PP

>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   4.9e-14   3.4e-10       2     110 ..     683     798 ..     682     801 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 4.9e-14
  PF02847.12   2 krkiflileeylssgdyeeavskl.eeLklp.kqhheivkillecalee....kktyneyyalLlsklceknlisskqfekgfsrvlesledleld.ipeairnlaeflarliaed 110
                 + k++  ++ey+++g + e++ ++ +eL +    +h +v   l c+l+       +  +++++L+s   + +l + +++ kgf  vle l+d  +d +p+a+  l+ +l++l a+ 
  MMETSP0890-20130614|7640_1 683 RAKAKAAIDEYAEIGQIGEVIACItQELDSMsPDRHIFVAQTLDCVLNAkatiREKFAPMLVQLASPSSDNRLLNADHIAKGFLLVLEFLPDHIMDiSPHAPIWLGDVLKSLAAAN 798
                 7899********************99**9999*****************8888889999*************************************66************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1558  (0.113956); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.42u 0.36s 00:00:01.77 Elapsed: 00:00:01.10
# Mc/sec: 1823.41
//
Query:       MMETSP0890-20130614|7643_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-40  137.5  14.1    7.7e-18   64.5   3.1    3.2  3  PF12796.2  Ankyrin repeats (3 copies)
    7.8e-34  113.6   9.6    1.4e-07   30.8   0.0    5.4  5  PF00023.25 Ankyrin repeat
    2.1e-28   97.5   4.8    7.5e-12   44.9   0.1    4.6  4  PF13857.1  Ankyrin repeats (many copies)
    1.4e-25   89.0   3.3    5.3e-09   36.2   0.1    3.9  4  PF13637.1  Ankyrin repeats (many copies)
    1.1e-21   74.6   5.6    0.00026   20.8   0.0    5.5  5  PF13606.1  Ankyrin repeat
     0.0016   18.4   0.7        1.9    8.6   0.1    2.7  2  PF01783.18 Ribosomal L32p protein family
  ------ inclusion threshold ------
      0.093   12.5   0.4       0.33   10.7   0.2    1.9  1  PF02255.11 PTS system, Lactose/Cellobiose specific IIA subunit
       0.24   10.7   3.0          6    6.2   0.1    2.5  2  PF07503.7  HypF finger


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   4.5e-16   7.6e-13      10      88 ..     370     453 ..     360     454 .. 0.89
   2 !   46.3   0.2     2e-15   3.4e-12      28      85 ..     426     483 ..     419     488 .. 0.94
   3 !   64.5   3.1   4.5e-21   7.7e-18       1      82 [.     461     547 ..     461     553 .. 0.94

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 4.5e-16
   PF12796.2  10 lelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnlr 88 
                  +l+++L ++g d+ +     etpL lA+++g+ ++vklLl++ga ++ ++  +g tpL  A+ +g+le + +Ll++ a++ ++
  MMETSP0890-20130614|7643_1 370 SKLTEILAQEGLDLSVttedEETPLQLASSQGSAAMVKLLLDHGAPLDLENpVSGLTPLATACAAGKLENATMLLSRSANPAST 453
                 36778888999999988898999*************************999*****************************9876 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 2e-15
   PF12796.2  28 tpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                 tpL  A++ag+le + +Ll++ a++ ++dk+ +tpLh+A  ngh+ +++lLl++ +d+
  MMETSP0890-20130614|7643_1 426 TPLATACAAGKLENATMLLSRSANPASTDKNRQTPLHHASANGHTSCCQLLLKHSSDI 483
                 8*****************************************************9997 PP

  == domain 3    score: 64.5 bits;  conditional E-value: 4.5e-21
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                 Lh+A  ng+ ++++lLl++  d+       ++t+Lh Aae+g++ +vklL+++gad   k+k++ tpL lA++++h+e++  L +++
  MMETSP0890-20130614|7643_1 461 LHHASANGHTSCCQLLLKHSSDIINltddeKRTALHMAAEKGHTLCVKLLCDKGADTKIKNKHNATPLDLAIKHKHTEVATCLRQAD 547
                 8*****************999988889999999***********************************************9998875 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.4e-10   7.5e-07       1      32 [.     389     420 ..     389     421 .. 0.93
   2 !   16.6   0.0   2.6e-06    0.0044       2      32 ..     424     454 ..     423     455 .. 0.94
   3 !   28.8   0.3   3.6e-10   6.2e-07       3      33 .]     458     488 ..     456     488 .. 0.91
   4 !   30.8   0.0     8e-11   1.4e-07       3      33 .]     492     522 ..     490     522 .. 0.94
   5 !   11.2   0.1   0.00013      0.22       3      23 ..     525     545 ..     523     550 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 4.4e-10
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 d +TPL lA++ g++ +vklLl++GA l++ +
  MMETSP0890-20130614|7643_1 389 DEETPLQLASSQGSAAMVKLLLDHGAPLDLEN 420
                 568************************99866 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.6e-06
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G TPL  A+  g le +++Lls+ A++  +d
  MMETSP0890-20130614|7643_1 424 GLTPLATACAAGKLENATMLLSRSANPASTD 454
                 99************************98887 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 3.6e-10
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 +TPLH A+ +g++++++lLl++  d+   +d
  MMETSP0890-20130614|7643_1 458 QTPLHHASANGHTSCCQLLLKHSSDIINLTD 488
                 8************************987765 PP

  == domain 4    score: 30.8 bits;  conditional E-value: 8e-11
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 +T+LH+Aa++g++ +vklL ++GAd  ++++
  MMETSP0890-20130614|7643_1 492 RTALHMAAEKGHTLCVKLLCDKGADTKIKNK 522
                 7************************999885 PP

  == domain 5    score: 11.2 bits;  conditional E-value: 0.00013
                 CBHHHHHHHTTHHHHHHHHHH CS
  PF00023.25   3 fTPLHlAalrgnlevvklLls 23 
                  TPL lA+++ ++ev+++L +
  MMETSP0890-20130614|7643_1 525 ATPLDLAIKHKHTEVATCLRQ 545
                 6****************9966 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   7.3e-08   0.00013       1      46 [.     376     420 ..     376     422 .. 0.91
   2 !   13.5   0.3   3.4e-05     0.058       1      36 [.     409     444 ..     409     451 .. 0.85
   3 !   26.2   0.1   3.3e-09   5.7e-06       1      38 [.     443     479 ..     443     484 .. 0.88
   4 !   44.9   0.1   4.4e-15   7.5e-12       1      56 []     476     531 ..     476     531 .. 0.97

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 7.3e-08
   PF13857.1   1 Llehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrd 46 
                 L+++g +++v ++de+  tpL lA ++g++ +v+lLl++ga l+l +
  MMETSP0890-20130614|7643_1 376 LAQEGlDLSVTTEDEE--TPLQLASSQGSAAMVKLLLDHGAPLDLEN 420
                 7789989999999999..**********************9998866 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.4e-05
   PF13857.1   1 Llehg.padvnatdeggntpLhlAakggalevvrlLl 36 
                 Ll+hg p+d+  +  +g tpL +A+ +g le + +Ll
  MMETSP0890-20130614|7643_1 409 LLDHGaPLDL-ENPVSGLTPLATACAAGKLENATMLL 444
                 89***88888.677999*******************9 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 3.3e-09
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlap 38 
                 Ll++  a++ +td++++tpLh A  +g++++++lLl++
  MMETSP0890-20130614|7643_1 443 LLSRS-ANPASTDKNRQTPLHHASANGHTSCCQLLLKH 479
                 56665.99****************************66 PP

  == domain 4    score: 44.9 bits;  conditional E-value: 4.4e-15
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 Ll+h ++ +n td +++t+Lh+Aa++g++ +v+lL+++gad++++++++ t+ldlA
  MMETSP0890-20130614|7643_1 476 LLKHSSDIINLTDDEKRTALHMAAEKGHTLCVKLLCDKGADTKIKNKHNATPLDLA 531
                 788889999**********************************************9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   9.7e-05      0.17       8      54 .]     363     410 ..     356     410 .. 0.81
   2 !   36.2   0.1   3.1e-12   5.3e-09       1      54 []     424     477 ..     424     477 .. 0.98
   3 !   29.8   0.1   3.2e-10   5.5e-07      12      53 ..     468     510 ..     465     510 .. 0.94
   4 !   32.4   0.1   4.8e-11   8.2e-08       2      53 ..     492     543 ..     491     544 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.7e-05
   PF13637.1   8 aaisgrlelvklLlek.gidinrtdesGntaLhiAalrgnieilklLl 54 
                 a++  +l  +  +l++ g d+  t e+ +t+L++A + g   ++klLl
  MMETSP0890-20130614|7643_1 363 AIKTADLSKLTEILAQeGLDLSVTTEDEETPLQLASSQGSAAMVKLLL 410
                 55556666666677666******************************8 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 3.1e-12
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 glt+L  a+++g le++  Ll++ +++  td++  t+Lh A  +g+ ++++lLl
  MMETSP0890-20130614|7643_1 424 GLTPLATACAAGKLENATMLLSRSANPASTDKNRQTPLHHASANGHTSCCQLLL 477
                 5899*************************************************8 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 3.2e-10
   PF13637.1  12 grlelvklLlekgid.inrtdesGntaLhiAalrgnieilklL 53 
                 g++ +++lLl++  d in td++ +taLh Aa++g+  ++klL
  MMETSP0890-20130614|7643_1 468 GHTSCCQLLLKHSSDiINLTDDEKRTALHMAAEKGHTLCVKLL 510
                 899************99999****************9999998 PP

  == domain 4    score: 32.4 bits;  conditional E-value: 4.8e-11
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklL 53 
                 +taLh+aa +g++ +vklL++kg+d   + ++ + t+L++A+++ + e++ +L
  MMETSP0890-20130614|7643_1 492 RTALHMAAEKGHTLCVKLLCDKGADTK-IkNKHNATPLDLAIKHKHTEVATCL 543
                 79***********************44.3599999*************99887 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.5e-07   0.00026       2      29 ..     390     417 ..     389     418 .. 0.92
   2 !    6.7   0.0    0.0053       9.1       2      28 ..     424     450 ..     423     452 .. 0.91
   3 !   20.1   0.1   2.6e-07   0.00044       1      28 [.     456     483 ..     456     486 .. 0.92
   4 !   19.6   0.0   3.6e-07   0.00062       3      27 ..     492     516 ..     490     519 .. 0.94
   5 ?    5.5   0.1     0.013        22       4      18 ..     526     540 ..     523     546 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.5e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  +TpL lA s+g+ ++v++Ll++ga ++
  MMETSP0890-20130614|7643_1 390 EETPLQLASSQGSAAMVKLLLDHGAPLD 417
                 58**********************9875 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0053
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G TpL +A+  g++e +  Ll++ a++
  MMETSP0890-20130614|7643_1 424 GLTPLATACAAGKLENATMLLSRSANP 450
                 89*******************998875 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 2.6e-07
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                 n++TpLh+A  ng+++ +++Ll++  di
  MMETSP0890-20130614|7643_1 456 NRQTPLHHASANGHTSCCQLLLKHSSDI 483
                 689*********************9995 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 3.6e-07
   PF13606.1   3 nTpLhlAasngrielveaLlengad 27 
                 +T+Lh+Aa++g++  v++L+++gad
  MMETSP0890-20130614|7643_1 492 RTALHMAAEKGHTLCVKLLCDKGAD 516
                 8***********************9 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.013
   PF13606.1   4 TpLhlAasngrielv 18 
                 TpL+lA++++++e++
  MMETSP0890-20130614|7643_1 526 TPLDLAIKHKHTEVA 540
                 9***********986 PP

>> PF01783.18  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0011       1.9      26      40 ..     173     187 ..     161     191 .. 0.87
   2 !    7.3   0.0    0.0028       4.8      23      40 ..     242     259 ..     234     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0011
                 EEE-TTTS-EECTTS CS
  PF01783.18  26 lvvCsncgeiklpHr 40 
                 ++ C++cg+++++H+
  MMETSP0890-20130614|7643_1 173 FNACKHCGQPRIKHT 187
                 689***********8 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0028
                 ---EEE-TTTS-EECTTS CS
  PF01783.18  23 apnlvvCsncgeiklpHr 40 
                 a ++++C+ncg +k++H 
  MMETSP0890-20130614|7643_1 242 ATTFNTCKNCGLPKISHN 259
                 6799************96 PP

>> PF02255.11  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2    0.0002      0.33      26      80 ..     433     487 ..     427     501 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0002
  PF02255.11  26 kegefeeaeelleeAeealkeahkvqtkliqkeasgekvevslllvHaqDhLmta 80 
                  +g++e+a+ ll ++ + +++ ++ qt l ++ a+g+   ++lll H+ D +  +
  MMETSP0890-20130614|7643_1 433 AAGKLENATMLLSRSANPASTDKNRQTPLHHASANGHTSCCQLLLKHSSDIINLT 487
                 67999********************************************977555 PP

>> PF07503.7  HypF finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0035         6      21      28 ..     173     180 ..     172     188 .. 0.81
   2 ?    4.3   0.3     0.014        24      21      28 ..     245     252 ..     243     257 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0035
   PF07503.7  21 fisCtnCG 28 
                 f++C++CG
  MMETSP0890-20130614|7643_1 173 FNACKHCG 180
                 89****** PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.014
   PF07503.7  21 fisCtnCG 28 
                 f++C+nCG
  MMETSP0890-20130614|7643_1 245 FNTCKNCG 252
                 89*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       798  (0.0583675); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.38s 00:00:01.31 Elapsed: 00:00:01.04
# Mc/sec: 1283.43
//
Query:       MMETSP0890-20130614|7644_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 109.83
//
Query:       MMETSP0890-20130614|7642_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.74
# Mc/sec: 1784.31
//
Query:       MMETSP0890-20130614|7648_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   52.7   0.1    6.4e-14   51.8   0.1    1.5  1  PF10033.4 Autophagy-related protein 13


Domain annotation for each model (and alignments):
>> PF10033.4  Autophagy-related protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   4.7e-18   6.4e-14       5     229 ..       3     219 ..       1     223 [. 0.72

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 4.7e-18
   PF10033.4   5 flKaaqiIlqsRleltpesaessaesssekknkwFnleieesdllkeelklwrslddlesrlppliietyLdlsqlssnqslvllddegkrwdvlksrtkkqeivLErWlield...essntesesssseelptiYkrsivlfRsLytllrllPayklskrl.......kkssasa......salnigcril............dgekpisskgriglskplidseea..........stetykfgpvetpvGrlsisVsYRk 229
                 ++Kaa+i+l +R+        s ++ + +   + Fn++++e d ++  ++ wr+  dl+    pl i ++   +++++++            + l++ tk    +LErW i+++    s + ++e++   +  ++ kr+++l+R+Ly+ + llPa  l ++        +     +      +  +ig  ++            +           g  +p ++   +          ++e++ f+p +  +G++si+V+Y  
  MMETSP0890-20130614|7648_1   3 VAKAAEIVLLNRI-------HSPSQLGRRLGRQRFNMDVDEVDVVRGMMEYWRR--DLHL---PLRILIVWRENNSTEKK------------NILQG-TK--PRLLERWDIQFElasASLSGPNEEELLVQVRSVWKRVVILLRTLYSRMLLLPATALTQEDiyskrsaR-----QqknhaeKLPSIGFAVCtrendsdawlllN-----------GHESPAYQ---SnppleftqdaKVERFFFTPASCAFGTYSIHVHYDA 219
                 68***********.......34444555667899********************..5553...46666666665444444............44667.44..689*********9987788889999999******************************9999655442.....223344344467777774333222222222...........22222222...13346666666***********************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.42s 00:00:01.50 Elapsed: 00:00:01.01
# Mc/sec: 1848.28
//
Query:       MMETSP0890-20130614|7650_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.81
# Mc/sec: 1567.99
//
Query:       MMETSP0890-20130614|7651_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   22.6   5.1     0.0026   16.5   0.1    2.8  3  PF04053.9  Coatomer WD associated region
    0.00036   20.0   3.5      0.031   13.7   0.1    3.7  4  PF00637.15 Region in Clathrin and VPS
    0.00099   18.6   9.4        1.5    8.7   0.2    6.2  5  PF13176.1  Tetratricopeptide repeat
     0.0011   19.2  19.8        2.7    8.7   0.0    6.3  5  PF13428.1  Tetratricopeptide repeat
     0.0013   18.5   5.9       0.13   12.0   0.0    4.7  5  PF13424.1  Tetratricopeptide repeat
     0.0019   17.7   3.9     0.0041   16.5   1.4    2.5  3  PF06827.9  Zinc finger found in FPG and IleRS
  ------ inclusion threshold ------
      0.071   12.9   3.6        3.8    7.5   0.0    4.1  5  PF01535.15 PPR repeat
      0.086   13.0   0.4         35    4.9   0.0    4.9  6  PF13812.1  Pentatricopeptide repeat domain
       0.18   12.2   6.3         21    5.7   0.1    5.5  5  PF13174.1  Tetratricopeptide repeat
       0.38   10.6   3.4          8    6.4   0.0    4.0  5  PF13374.1  Tetratricopeptide repeat
       0.41   10.5  19.3        4.1    7.4   0.4    6.8  7  PF07719.12 Tetratricopeptide repeat
        2.4    7.7  12.8         43    3.8   0.2    5.6  6  PF00515.23 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   2.3e+03     163     199 ..     103     142 ..      86     146 .. 0.71
   2 !   16.5   0.1   2.3e-06    0.0026     341     383 ..     158     200 ..     155     208 .. 0.90
   3 !    7.4   0.1    0.0013       1.5     309     398 ..     222     320 ..     208     332 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2
   PF04053.9 163 skdtvyilsynleavee....deeegvedafevlhelseri 199
                 s d+++i++  +    e      +eg+ +af++l++ s ++
  MMETSP0890-20130614|7651_1 103 SHDSIFITNELKP-LRElrevIRSEGLSQAFSMLQTTSRQV 142
                 5566666665444.444577889999999999999976655 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.3e-06
   PF04053.9 341 akeldseekWkkLgdaAlsqgniklaeeayqkakdfdkLllLy 383
                 +k+ ++++ W+ L++ Al+  ++++ae+a+ k++d+ ++ l+ 
  MMETSP0890-20130614|7651_1 158 IKQAEQQDLWSCLAESALEALDLNIAEKALVKCGDYRGICLVQ 200
                 689999*******************************999876 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0013
   PF04053.9 309 gypelAlqlvqDpetrFdLAlelgnLevAlelakeldsee..........kWkkLgdaAlsqgniklaeeayqkakdfdkLllLylstgnkekLkkLaki 398
                 g  + A q+ +D++ + dLA++l    +  + +++l +++           +k+Lg+     gn + a e ++ akd++kL   y  +++  kL++L ++
  MMETSP0890-20130614|7651_1 222 GRFDEAEQIYSDMDRK-DLAVQLRSRLEDWTRVSSLVKKNgagddtqlttAYKQLGERFGGAGNWEKAREYLEMAKDVKKLAQCYYRLNDFTKLERLLTD 320
                 5556666666776655.7777764322223333333333345556677779*********************************************9764 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   1.6e+03     119     137 ..     158     176 ..     144     182 .. 0.81
   2 ?   -0.1   0.0      0.49   5.5e+02      83     111 ..     234     262 ..     210     276 .. 0.66
   3 !   13.7   0.1   2.7e-05     0.031      20     122 ..     282     379 ..     264     395 .. 0.78
   4 ?    4.1   0.1     0.026        29      78     106 ..     394     421 ..     389     428 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.4
                 TTT---TTHHHHHHHHHHH CS
  PF00637.15 119 akkasdpelwekllealld 137
                 +k+a++++lw++l+e  l+
  MMETSP0890-20130614|7651_1 158 IKQAEQQDLWSCLAESALE 176
                 5788999999999987666 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.49
                 -SSHHHHHHHH----THHHHSS-SSTT-- CS
  PF00637.15  83 adlyeeavilykkinefkkaisllkklkd 111
                 +d  ++av l ++++++++  sl+kk+++
  MMETSP0890-20130614|7651_1 234 MDRKDLAVQLRSRLEDWTRVSSLVKKNGA 262
                 44445667777777777777777777766 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 2.7e-05
                 TT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTSS---...S-.TTHHHHHHHT-SSHHHHHHHH----THHHHSS-SSTT--TTGGGTTTTT- CS
  PF00637.15  20 aglleelieyLekvlketsrenpavqtallelyakyedpekleeflkknnn...yd.lekvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyakka 122
                 ag++e   eyLe++      +      +l+++y + +d++kle+ l+        d l +++ + e+ +l+  av +y + +e kkai+++  l+++ +a+e+a + 
  MMETSP0890-20130614|7651_1 282 AGNWEKAREYLEMAK-----D----VKKLAQCYYRLNDFTKLERLLTDQAEvleSDiLLRLGYMFESIGLVSPAVDAYAHAGERKKAIDCCILLNQWGKAVEIAEEF 379
                 677777777888777.....3....458*******************5555423331345566669999*********************9999*********9875 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.026
                 HHHHT-SSHHHHHHHH----THHHHSS-S CS
  PF00637.15  78 klcekadlyeeavilykkinefkkaisll 106
                 +l++++++  +av+ly+k n+ ++a++ll
  MMETSP0890-20130614|7651_1 394 QLLKENKKL-LAVELYRKANKPTDAAKLL 421
                 678888888.9**************9974 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.34   3.9e+02      12      22 ..     221     231 ..     215     233 .. 0.90
   2 ?    5.1   0.0     0.019        21      12      24 ..     282     294 ..     266     298 .. 0.83
   3 !    8.7   0.2    0.0013       1.5       5      31 ..     301     328 ..     299     333 .. 0.88
   4 ?    3.1   0.0      0.08        91       7      22 ..     348     363 ..     347     366 .. 0.91
   5 ?   -0.7   0.0       1.3   1.5e+03       7      22 ..     406     421 ..     403     428 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.34
   PF13176.1  12 lgdyekAiely 22 
                 lg++++A+++y
  MMETSP0890-20130614|7651_1 221 LGRFDEAEQIY 231
                 8*******999 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.019
   PF13176.1  12 lgdyekAielyer 24 
                  g++ekA e++e 
  MMETSP0890-20130614|7651_1 282 AGNWEKAREYLEM 294
                 79********995 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0013
   PF13176.1   5 LarlysrlgdyekAielyeraL.altkd 31 
                 La++y rl+d+ k+++l++ +  +l++d
  MMETSP0890-20130614|7651_1 301 LAQCYYRLNDFTKLERLLTDQAeVLESD 328
                 9******************999777766 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.08
   PF13176.1   7 rlysrlgdyekAiely 22 
                 ++y   g+++kAi+++
  MMETSP0890-20130614|7651_1 348 DAYAHAGERKKAIDCC 363
                 68999*********97 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 1.3
   PF13176.1   7 rlysrlgdyekAiely 22 
                 +ly++ ++  +A++l+
  MMETSP0890-20130614|7651_1 406 ELYRKANKPTDAAKLL 421
                 4677777777777766 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0024       2.7       6      38 ..     213     242 ..     211     246 .. 0.83
   2 !    7.7   0.1    0.0052       5.9       3      27 ..     271     295 ..     269     298 .. 0.91
   3 ?    6.2   0.1     0.016        18       6      40 ..     300     334 ..     295     337 .. 0.83
   4 ?    1.2   0.0      0.64   7.3e+02       8      23 ..     347     362 ..     346     364 .. 0.88
   5 ?    5.4   0.4     0.027        31       6      37 ..     403     438 ..     400     447 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0024
   PF13428.1   6 alarallalGdpdeAiallrralalaPddaeal 38 
                 ++a+++  lG++deA++ + ++   + +d++++
  MMETSP0890-20130614|7651_1 213 QRAEVMTYLGRFDEAEQIYSDM---DRKDLAVQ 242
                 789****************998...55556555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0052
   PF13428.1   3 allalarallalGdpdeAiallrra 27 
                 a+ +l++ +  +G++++A+++l+ a
  MMETSP0890-20130614|7651_1 271 AYKQLGERFGGAGNWEKAREYLEMA 295
                 8999******************976 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.016
   PF13428.1   6 alarallalGdpdeAiallrralalaPddaealll 40 
                 +la+ + +l+d+ + ++ll + ++   +d  ++l 
  MMETSP0890-20130614|7651_1 300 KLAQCYYRLNDFTKLERLLTDQAEVLESDILLRLG 334
                 79*****************9998877777666655 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.64
   PF13428.1   8 arallalGdpdeAial 23 
                 ++a++++G+ ++Ai++
  MMETSP0890-20130614|7651_1 347 VDAYAHAGERKKAIDC 362
                 689**********986 PP

  == domain 5    score: 5.4 bits;  conditional E-value: 0.027
   PF13428.1   6 alarallalGdpdeAiallrrala....laPddaea 37 
                 + +++++ ++ p +A++ll  +++    +  d ++a
  MMETSP0890-20130614|7651_1 403 LAVELYRKANKPTDAAKLLATIAEesgvQRADPLRA 438
                 56799***************9987344323344444 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.036        41      11      28 ..     214     231 ..     209     233 .. 0.75
   2 !   12.0   0.0   0.00012      0.13       3      35 ..     267     299 ..     264     302 .. 0.81
   3 ?    1.0   0.1      0.33   3.7e+02      52      64 ..     301     313 ..     299     362 .. 0.70
   4 ?   -1.5   0.0       1.9   2.2e+03      14      28 ..     349     363 ..     344     382 .. 0.68
   5 ?   -1.9   0.1       2.6   2.9e+03      67      72 ..     406     411 ..     390     453 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.036
   PF13424.1  11 lalvlrrlgdydeAlely 28 
                  a+v   lg++deA+++y
  MMETSP0890-20130614|7651_1 214 RAEVMTYLGRFDEAEQIY 231
                 577777888888888877 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00012
   PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalell 35 
                 +l t++ +l++ +   g++++A+e++e a ++ 
  MMETSP0890-20130614|7651_1 267 QLTTAYKQLGERFGGAGNWEKAREYLEMAKDVK 299
                 567889999999999999999999999998775 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.33
   PF13424.1  52 lanlylalgdyde 64 
                 la++y++l+d+ +
  MMETSP0890-20130614|7651_1 301 LAQCYYRLNDFTK 313
                 4445554444443 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.9
   PF13424.1  14 vlrrlgdydeAlely 28 
                 ++ + g+ ++A++++
  MMETSP0890-20130614|7651_1 349 AYAHAGERKKAIDCC 363
                 566666666666655 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 2.6
   PF13424.1  67 eylekA 72 
                 e+++kA
  MMETSP0890-20130614|7651_1 406 ELYRKA 411
                 333333 PP

>> PF06827.9  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9   3.3e+03      11      26 ..      92     104 ..      91     104 .. 0.78
   2 ?   -1.7   0.0       1.9   2.2e+03      13      26 ..     529     542 ..     526     544 .. 0.82
   3 !   16.5   1.4   3.6e-06    0.0041       3      27 ..     632     655 ..     631     656 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.9
   PF06827.9  11 iervgqggrstflCpR 26 
                  e+v+q   +++ C +
  MMETSP0890-20130614|7651_1  92 VEDVVQ---NPETCSH 104
                 689999...8888875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.9
   PF06827.9  13 rvgqggrstflCpR 26 
                  ++ +++ ++lC++
  MMETSP0890-20130614|7651_1 529 AIRLAEYEDVLCKH 542
                 578899999***98 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 3.6e-06
   PF06827.9   3 kCpRCwny.iervgqggrstflCpRC 27 
                 kCp+C+++ ie++ q   s+++Cp C
  MMETSP0890-20130614|7651_1 632 KCPTCRHHaIETELQ--GSSTFCPLC 655
                 9*******7777777..*******99 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0033       3.8      13      30 ..     221     238 ..     218     239 .. 0.90
   2 ?    2.4   0.1      0.15   1.7e+02      11      25 ..     280     294 ..     277     297 .. 0.81
   3 ?   -0.4   0.0       1.1   1.3e+03       8      22 ..     348     362 ..     347     370 .. 0.85
   4 ?   -1.5   0.0       2.6     3e+03       7      22 ..     360     375 ..     358     378 .. 0.88
   5 ?   -3.2   0.0       8.8     1e+04      10      23 ..     408     421 ..     405     421 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0033
  PF01535.15  13 aGkleeAlelfkeMkekG 30 
                  G+++eA++++ +M +k+
  MMETSP0890-20130614|7651_1 221 LGRFDEAEQIYSDMDRKD 238
                 59************9986 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.15
  PF01535.15  11 ckaGkleeAlelfke 25 
                 + aG++e+A e+++ 
  MMETSP0890-20130614|7651_1 280 GGAGNWEKAREYLEM 294
                 558********8875 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.1
  PF01535.15   8 sgyckaGkleeAlel 22 
                 ++y++aG+ ++A+++
  MMETSP0890-20130614|7651_1 348 DAYAHAGERKKAIDC 362
                 89******9999876 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 2.6
  PF01535.15   7 IsgyckaGkleeAlel 22 
                 I+++   +++ +A+e+
  MMETSP0890-20130614|7651_1 360 IDCCILLNQWGKAVEI 375
                 89999999*****997 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 8.8
  PF01535.15  10 yckaGkleeAlelf 23 
                 y ka+k+ +A +l+
  MMETSP0890-20130614|7651_1 408 YRKANKPTDAAKLL 421
                 88999999999885 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.7   6.5e+03       9      21 ..     185     197 ..     181     200 .. 0.82
   2 ?    4.9   0.0     0.031        35      15      32 ..     222     239 ..     217     241 .. 0.88
   3 ?   -1.6   0.0       3.8   4.3e+03      14      25 ..     282     293 ..     279     294 .. 0.87
   4 ?    0.8   0.0      0.64   7.3e+02       8      21 ..     347     360 ..     344     369 .. 0.85
   5 ?   -2.1   0.0       5.1   5.8e+03      10      29 ..     407     426 ..     404     431 .. 0.76
   6 ?   -2.5   0.0       7.3   8.3e+03       9      23 ..     606     620 ..     599     623 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 5.7
   PF13812.1   9 talaksgrpeaAl 21 
                 +al+k+g+    +
  MMETSP0890-20130614|7651_1 185 KALVKCGDYRGIC 197
                 699****987765 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.031
   PF13812.1  15 grpeaAlalleeMeqqgv 32 
                 gr+++A++++++M ++ +
  MMETSP0890-20130614|7651_1 222 GRFDEAEQIYSDMDRKDL 239
                 9************98765 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 3.8
   PF13812.1  14 sgrpeaAlalle 25 
                 +g++e+A++ le
  MMETSP0890-20130614|7651_1 282 AGNWEKAREYLE 293
                 79******9987 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.64
   PF13812.1   8 italaksgrpeaAl 21 
                 ++a+a++g++++A 
  MMETSP0890-20130614|7651_1 347 VDAYAHAGERKKAI 360
                 79*******99986 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 5.1
   PF13812.1  10 alaksgrpeaAlalleeMeq 29 
                  + k++ p +A +ll+   +
  MMETSP0890-20130614|7651_1 407 LYRKANKPTDAAKLLATIAE 426
                 68899999999999987665 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 7.3
   PF13812.1   9 talaksgrpeaAlal 23 
                 +a++  g p +A++l
  MMETSP0890-20130614|7651_1 606 LACLDTGTPYSACTL 620
                 699999*99999987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3   1.5e+03       6      24 ..     214     232 ..     213     234 .. 0.80
   2 ?    5.7   0.1     0.019        21      12      25 ..     274     294 ..     267     297 .. 0.74
   3 ?    2.9   0.0      0.14   1.6e+02       5      17 ..     300     312 ..     300     320 .. 0.86
   4 ?   -0.2   0.0       1.4   1.6e+03       9      25 ..     362     378 ..     328     379 .. 0.60
   5 ?    0.3   0.0      0.95   1.1e+03       8      28 ..     406     426 ..     402     428 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHH CS
   PF13174.1   6 lalsyyklgdtdeAleale 24 
                 +a+++  lg++deA +++ 
  MMETSP0890-20130614|7651_1 214 RAEVMTYLGRFDEAEQIYS 232
                 567777778*******995 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.019
                 HH.......HHHHHHHHHHHH CS
   PF13174.1  12 kl.......gdtdeAlealer 25 
                 +l       g++++A+e+le 
  MMETSP0890-20130614|7651_1 274 QLgerfggaGNWEKAREYLEM 294
                 4346666669*********96 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHH CS
   PF13174.1   5 klalsyyklgdtd 17 
                 kla++yy+l+d++
  MMETSP0890-20130614|7651_1 300 KLAQCYYRLNDFT 312
                 79******98876 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHH CS
   PF13174.1   9 syyklgdtdeAlealer 25 
                 + + l+++ +A+e+ e+
  MMETSP0890-20130614|7651_1 362 CCILLNQWGKAVEIAEE 378
                 33344577777777665 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.95
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1   8 lsyyklgdtdeAlealerlik 28 
                 ++y+k++++++A ++l  + +
  MMETSP0890-20130614|7651_1 406 ELYRKANKPTDAAKLLATIAE 426
                 789998899999999887765 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17     2e+02      13      25 ..     219     231 ..     215     234 .. 0.81
   2 ?    6.4   0.0     0.007         8       4      31 ..     271     298 ..     268     302 .. 0.85
   3 ?   -1.2   0.0       1.7     2e+03       8      25 ..     301     318 ..     300     327 .. 0.83
   4 ?   -2.0   0.0       2.9   3.3e+03      15      27 ..     366     378 ..     365     378 .. 0.88
   5 ?   -3.4   0.0       8.2   9.4e+03      11      25 ..     407     421 ..     403     425 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.17
   PF13374.1  13 rargryeeAlale 25 
                   +gr++eA++++
  MMETSP0890-20130614|7651_1 219 TYLGRFDEAEQIY 231
                 568*******998 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.007
   PF13374.1   4 alnnLAlalrargryeeAlaleeealai 31 
                 a+  L+ ++   g++e+A++++e a ++
  MMETSP0890-20130614|7651_1 271 AYKQLGERFGGAGNWEKAREYLEMAKDV 298
                 6677999***************988765 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.7
   PF13374.1   8 LAlalrargryeeAlale 25 
                 LA  +++++++ + ++l+
  MMETSP0890-20130614|7651_1 301 LAQCYYRLNDFTKLERLL 318
                 899999999998888776 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 2.9
   PF13374.1  15 rgryeeAlaleee 27 
                 ++++++A++++ee
  MMETSP0890-20130614|7651_1 366 LNQWGKAVEIAEE 378
                 589******9997 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 8.2
   PF13374.1  11 alrargryeeAlale 25 
                 ++r+ ++  +A +l+
  MMETSP0890-20130614|7651_1 407 LYRKANKPTDAAKLL 421
                 677777777777765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.4   1.6e+03       3      26 ..     166     189 ..     164     190 .. 0.81
   2 ?    4.9   0.0     0.022        25       6      24 ..     213     231 ..     210     233 .. 0.87
   3 ?    7.4   0.4    0.0036       4.1       3      27 ..     271     295 ..     270     298 .. 0.87
   4 ?    3.9   0.1     0.047        53       6      18 ..     300     312 ..     295     313 .. 0.88
   5 ?    1.8   0.1      0.22   2.6e+02      10      24 ..     349     363 ..     348     377 .. 0.92
   6 ?   -1.1   0.0       1.9   2.2e+03      20      27 ..     404     411 ..     395     424 .. 0.64
   7 ?   -0.9   0.0       1.7   1.9e+03       3      24 ..     544     565 ..     542     572 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafek 26 
                 ++ +l+++++++ d++ A++a+ k
  MMETSP0890-20130614|7651_1 166 LWSCLAESALEALDLNIAEKALVK 189
                 799999999999999988888755 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.022
                 HHHHHHHHTT-HHHHHHHH CS
  PF07719.12   6 nlGlayyklgdyeeAleaf 24 
                 +++++  +lg+++eA++ +
  MMETSP0890-20130614|7651_1 213 QRAEVMTYLGRFDEAEQIY 231
                 6899999********9866 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                 a+ +lG+    +g++e+A+e++e A
  MMETSP0890-20130614|7651_1 271 AYKQLGERFGGAGNWEKAREYLEMA 295
                 678899999999*********9965 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.047
                 HHHHHHHHTT-HH CS
  PF07719.12   6 nlGlayyklgdye 18 
                  l+++yy+l+d+ 
  MMETSP0890-20130614|7651_1 300 KLAQCYYRLNDFT 312
                 69*********96 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.22
                 HHHHTT-HHHHHHHH CS
  PF07719.12  10 ayyklgdyeeAleaf 24 
                 ay+++g+ ++A++++
  MMETSP0890-20130614|7651_1 349 AYAHAGERKKAIDCC 363
                 8999*******9985 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 1.9
                 HHHHHHHH CS
  PF07719.12  20 AleafekA 27 
                 A+e+++kA
  MMETSP0890-20130614|7651_1 404 AVELYRKA 411
                 55555555 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleaf 24 
                 ++ +++la+y+ +d+  + +af
  MMETSP0890-20130614|7651_1 544 IYALIALAAYHTQDFYICSRAF 565
                 68899999**999986666555 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12   1.3e+02      13      24 ..     220     231 ..     212     233 .. 0.85
   2 ?    3.8   0.2     0.037        43       4      27 ..     272     295 ..     270     300 .. 0.78
   3 ?    3.4   0.1      0.05        57       7      18 ..     301     312 ..     298     313 .. 0.88
   4 ?   -1.5   0.0       1.7     2e+03       3      24 ..     329     350 ..     328     352 .. 0.87
   5 ?    2.7   0.1     0.084        96      10      24 ..     349     363 ..     348     364 .. 0.93
   6 ?   -1.5   0.0       1.7   1.9e+03      19      27 ..     403     411 ..     395     418 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.12
                 HTT-HHHHHHHH CS
  PF00515.23  13 klgkydeAleyy 24 
                 +lg++deA++ y
  MMETSP0890-20130614|7651_1 220 YLGRFDEAEQIY 231
                 79******9977 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.037
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
  PF00515.23   4 lynlGnaylklgkydeAleyyekA 27 
                 +++lG  +   g++++A ey e A
  MMETSP0890-20130614|7651_1 272 YKQLGERFGGAGNWEKAREYLEMA 295
                 56666666678***********99 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.05
                 HHHHHHHTT-HH CS
  PF00515.23   7 lGnaylklgkyd 18 
                 l+++y++l+++ 
  MMETSP0890-20130614|7651_1 301 LAQCYYRLNDFT 312
                 9*********96 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHTT-HHHHHHHH CS
  PF00515.23   3 alynlGnaylklgkydeAleyy 24 
                 +l +lG+++ + g    A+++y
  MMETSP0890-20130614|7651_1 329 ILLRLGYMFESIGLVSPAVDAY 350
                 6889*****9999999999988 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.084
                 HHHHTT-HHHHHHHH CS
  PF00515.23  10 aylklgkydeAleyy 24 
                 ay + g+ ++A++++
  MMETSP0890-20130614|7651_1 349 AYAHAGERKKAIDCC 363
                 7999**********9 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 1.7
                 HHHHHHHHH CS
  PF00515.23  19 eAleyyekA 27 
                  A+e y+kA
  MMETSP0890-20130614|7651_1 403 LAVELYRKA 411
                 588888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       738  (0.0539789); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.19u 0.43s 00:00:01.62 Elapsed: 00:00:00.78
# Mc/sec: 2046.12
//
Query:       MMETSP0890-20130614|7653_1  [L=858]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1009  (0.0738005); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.25u 0.41s 00:00:01.66 Elapsed: 00:00:00.65
# Mc/sec: 3163.19
//
Query:       MMETSP0890-20130614|7656_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-17   62.3   0.0    6.4e-17   61.5   0.0    1.3  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    1.2e-16   61.1   0.0    3.8e-16   59.5   0.0    1.8  2  PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   9.3e-21   6.4e-17       8      96 ..     189     276 ..     185     278 .. 0.95

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 9.3e-21
                 EEEES--E-EEEEEEEESSSCEEEEEEET--EEEEEE-EE.SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEE CS
  PF03171.15   8 nrYpppekglglgpHtDnenriltillqddggglqfrked.kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislaff 96 
                 +rY p   +lg g+H D   + ltil+ d++ gl+++ +   wi+vpp p+ ++vn gd++++ t g+++s  Hrv+p+ ++ R+s a+f
  MMETSP0890-20130614|7656_1 189 LRYAPTLDNLGAGAHADW--GSLTILATDQVPGLEIESDSgAWIPVPPRPGCFIVNAGDQVEFYTRGFFRSANHRVRPTVNQVRFSTALF 276
                 6888877899********..*****************9999**********************************************998 PP

>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   5.6e-20   3.8e-16       1      96 [.      22     116 ..      22     144 .. 0.80
   2 ?   -1.8   0.0      0.59     4e+03      27      40 ..     252     265 ..     249     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 5.6e-20
   PF14226.1   1 iPvidlspssedreevakelreAceevGffqvvnhgvpeelieevfeaarefFalpleeKekl.arspefrgysrlgsektdg.kldwkesfdlgtel 96 
                 +P++dls    ++ee+ + lreA++++Gff+v+ hg+++el+++ f+a+r+ F+l +++Ke +   s+   gy + +    d+ + d ke+f l+t++
  MMETSP0890-20130614|7656_1  22 VPTVDLS---ISEEEASSVLREALRNYGFFYVKSHGISDELVSQQFAASRDVFNLEQAVKETMsFESTLDIGYLSNQGLDEDSgQIDTKEGFLLSTNA 116
                 8******...34579999*********************************************755667788877655444446*********99984 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.59
   PF14226.1  27 vGffqvvnhgvpee 40 
                  Gff   nh v + 
  MMETSP0890-20130614|7656_1 252 RGFFRSANHRVRPT 265
                 59***9***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1510.56
//
Query:       MMETSP0890-20130614|7657_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-22   78.8   1.9    9.6e-22   77.1   0.5    2.2  2  PF01399.22 PCI domain
    1.8e-07   30.8   2.3    2.4e-07   30.5   0.5    2.0  2  PF10075.4  COP9 signalosome, subunit CSN8
  ------ inclusion threshold ------
       0.11   12.0   3.0        1.3    8.5   0.0    3.6  3  PF13414.1  TPR repeat
       0.12   12.3   1.5        1.6    8.8   0.1    2.8  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.3     1e+03      12      40 ..      79     105 ..      68     120 .. 0.74
   2 !   77.1   0.5   2.8e-25   9.6e-22       2     103 ..     313     413 ..     312     415 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.3
                 XXX..XXXXXXXXXXX.....XXXXXXX--- CS
  PF01399.22  12 sgn..lsgfseelkdleeelladdglsqlle 40 
                   n  ls+f e+++ + +ell+   l+++++
  MMETSP0890-20130614|7657_1  79 VLNfrLSKFDETVERY-RELLN---LAPHVT 105
                 4443499*********.77776...555555 PP

  == domain 2    score: 77.1 bits;  conditional E-value: 2.8e-25
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE- CS
  PF01399.22   2 sysdllkalrsgnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvf 103
                 ++++l +a+  ++l +f+ +lk++ + + +d+++  +le L++k++e++l +++k+y++++++ +a++l+l+ ++++ +l++lI d+++++kidqp+ ++++
  MMETSP0890-20130614|7657_1 313 AMRQLRQAYDANDLRSFELTLKKN-NAITQDPYIMRYLEPLRRKMIEQVLLSYVKPYQRLTIDFIASQLNLPLSTLQDVLIDLILDQRIAGKIDQPNNLLIL 413
                 7999********************.*************************************************************************9986 PP

>> PF10075.4  COP9 signalosome, subunit CSN8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.7   2.4e+03      65      80 ..     251     266 ..     247     269 .. 0.76
   2 !   30.5   0.5     7e-11   2.4e-07       3     117 ..     277     390 ..     275     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.7
   PF10075.4  65 sndlsedltafvagle 80 
                 +n++se +++f +g++
  MMETSP0890-20130614|7657_1 251 DNEWSEAYNEFYEGFR 266
                 5788888888888886 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 7e-11
   PF10075.4   3 kaelytliLlkaLtqndiadfrlllkrlpaaikesdeeiqkllsLeqlLeendyakfwqtlksndlsedltafvagleelvRkeiaelvgkaY....esIsadvlaelLglsdeelekf 117
                 k +l + +L+++L+++ i+ f+   ++  ++    + ei ++ +L q++  nd  +f  tlk+n+   +  + +  ++e  R++++e v  +Y    +++++d++a+ L+l  ++l+++
  MMETSP0890-20130614|7657_1 277 KLCLKYVVLANMLATSNINPFDGREAKAFQD----ETEIAAMRQLRQAYDANDLRSFELTLKKNNAI-TQDPYIMRYLEPLRRKMIEQVLLSYvkpyQRLTIDFIASQLNLPLSTLQDV 390
                 5678899****************99955555....49**************************9333.44555666666666666666654444444**************98877766 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00039       1.3      16      69 .]      45     102 ..      36     102 .. 0.85
   2 ?   -3.2   0.0       1.8     6e+03      43      51 ..     158     166 ..     141     173 .. 0.58
   3 ?    0.2   0.3      0.15   5.3e+02      10      38 ..     245     273 ..     241     290 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00039
   PF13414.1  16 egdydeAieayekAleldpnnae.....lyynlAlaylklgkdyeeAledyekAleldP 69 
                 + +++ Aie++ek +el+ n  +     ++  l  + ++l  +++e +e y++ l+l+P
  MMETSP0890-20130614|7657_1  45 NDEPERAIEMFEKVVELERNREVkwrfkALEHLVVLNFRLS-KFDETVERYRELLNLAP 102
                 567899***********999877788889999999999998.58999999999998887 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.8
   PF13414.1  43 lAlaylklg 51 
                  +++yl++ 
  MMETSP0890-20130614|7657_1 158 VGKLYLQQK 166
                 366666654 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.15
   PF13414.1  10 GnalfkegdydeAieayekAleldpnnae 38 
                 G ++++ +++ eA  ++ ++ +   +  +
  MMETSP0890-20130614|7657_1 245 GKMYMTDNEWSEAYNEFYEGFRAYQEAGN 273
                 67788999999999988777666555555 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.088     3e+02      37      56 ..      44      64 ..      43     103 .. 0.67
   2 ?    8.8   0.1   0.00047       1.6      27      58 ..     156     185 ..     131     193 .. 0.74
   3 ?   -2.8   0.0       1.9   6.4e+03      35      48 ..     248     261 ..     245     281 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.088
                H---HHHHHHHHHC.TSHCHC CS
   PF12895.2 37 lngeykrAyellrk.leldss 56
                +n e++rA+e ++k  el+ +
  MMETSP0890-20130614|7657_1 44 RNDEPERAIEMFEKvVELERN 64
                566777777777666444433 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00047
                 CHHHHHHHHHH---HHHHHHHHHCTSHCHCBH CS
   PF12895.2  27 ylyalAlclylngeykrAyellrkleldsssl 58 
                      ++ +++++ey+r   ++++l++ ++++
  MMETSP0890-20130614|7657_1 156 IK--VGKLYLQQKEYYRVASIINQLKQVCQHP 185
                 34..499***************9999999995 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.9
                 HHH---HHHHHHHH CS
   PF12895.2  35 lylngeykrAyell 48 
                 ++  +e+ +Ay+ +
  MMETSP0890-20130614|7657_1 248 YMTDNEWSEAYNEF 261
                 66677777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.89
# Mc/sec: 1211.64
//
Query:       MMETSP0890-20130614|7661_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   53.7   0.0    1.4e-06   27.9   0.0    3.2  3  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.14   11.9   4.4        2.8    7.6   0.3    2.4  2  PF00621.15 RhoGEF domain
       0.16   11.6   2.2        0.6    9.8   0.1    2.2  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     3e-10   1.4e-06       1      64 [.      41     112 ..      41     126 .. 0.87
   2 ?   -0.9   0.0      0.29   1.3e+03      64      84 ..     221     243 ..     209     244 .. 0.81
   3 !   21.8   0.0   2.4e-08   0.00011       2      84 ..     337     434 ..     336     435 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 3e-10
                 EEEEEEEESS--S-S.....TSSSS-EEEEEEEECTTE...EEEEE--BSS-SSEEEEEEEEEEESCGGGTE CS
  PF00168.25   1 LkvkvieAknLpnkd.....kngtsdpyvkvslggaks...kkkrTrvikntlnPvWnekftfevvaeelae 64 
                 L v + +A++L  kd       gtsdp    +l   +     k++++  k+tl P+Wne+f+f+++a+  +e
  MMETSP0890-20130614|7661_1  41 LYVGLSRARDLAIKDkylimRGGTSDPRMDFELYTGPDnekIKFKSNQRKRTLKPQWNEDFSFKIEAPAEHE 112
                 5688899************9999******99988877765666*********************99887766 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.29
                 E..EEEEEEECHSSSCSEE---E CS
  PF00168.25  64 e..leleVkdedrfgkddflGea 84 
                 +  l  ++ d d+++k+d+lG +
  MMETSP0890-20130614|7661_1 221 DwrLYCDLVDVDKDSKNDSLGSV 243
                 455788999***********986 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2.4e-08
                 EEEEEEESS--S-S....TSSSS-EEEEEEEECTTE..EE....EEE--BSS-SSEEEEEEEEEE..ESCGGGTE.....EEEEEEECHSSSCSEE---E CS
  PF00168.25   2 kvkvieAknLpnkd....kngtsdpyvkvslggaks..kk....krTrvikntlnPvWnekftfe..vvaeelae.....leleVkdedrfgkddflGea 84 
                 ++ +++A+ Lp++d       +sdpy + ++++     kk    + ++++ +tl P++ e ++++   ++++        l+++  d+d ++++d lG++
  MMETSP0890-20130614|7661_1 337 QIGLFKARELPAMDdnitTHDSSDPYFQFQVLSLSGddKKksatFGSSTKYQTLFPIYRECLKVKggPWNND--AlndliLRVTALDYDLVSQADNLGTI 434
                 57789*********7777666******99999876675235777999*****************95322222..23579999999**********99985 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3   0.00062       2.8      53     145 ..     524     615 ..     523     619 .. 0.82
   2 ?    5.3   0.2    0.0032        14      14      95 ..     723     805 ..     698     814 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00062
                 HHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHCTHHHHHHHHHHHHHH-HHHHHHHH..HH.....GGG.TT--HHHHCTHHHHHHHHHHH CS
  PF00621.15  53 hkeflekLeerlkekkdaqkigdvflkleeflkvYseYisnydkalkllkelskknskfkkflkecee.....specskldLeslLikPvqRlprYpl 145
                 +++fle+L  ++++  + +k  d f+         +e+   +++a kl ++l ++ +kf+++++ c +     + + +  dL s L + + R   Y l
  MMETSP0890-20130614|7661_1 524 NDQFLEHLDSEIDKDWQDEKTQDSFVP------TANEFTLAKKNAHKLQSNLLQDAHKFQELVDACASflrnpQHKANCSDLASALQLAIVRHRTYAL 615
                 578999999999666566667888888......4569999***********9999999********99999665555777899999999999888866 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0032
                 HHHHHHHHHTHHHHHHC.TSS-HHHHHHHSTTHHHHHHHHHHHHHHHHHHH.H--.....------HHHHHH.HH-HHHHHHHHHCTHH CS
  PF00621.15  14 rdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerl.kek.....kdaqkigdvflk.leeflkvYseYisnyd 95 
                 +dL+ + + + + lk+    + e++i +i s +e i ++ + +l++++      +     ++ q+    f + +++ ++vY++Y+ +++
  MMETSP0890-20130614|7661_1 723 NDLTRMNSMWNDALKA--LAFVENTIPKIVSSLEVIESIIQVILKAIQGISfPPNpallvDMLQT----FRQiFKQAKSVYETYCCQKQ 805
                 5666666666666655..56777899999999999999999999999994433335344455555....5555555888******8765 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2     0.069   3.2e+02     105     133 ..     407     433 ..     406     442 .. 0.82
   2 ?    9.8   0.1   0.00013       0.6      62     119 ..     701     757 ..     684     790 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.069
   PF04513.7 105 nstLnnllqalnnldlgalsqeledaldt 133
                 n +Ln l+  + +ld + +sq+++  l t
  MMETSP0890-20130614|7661_1 407 NDALNDLILRVTALDYDLVSQADN--LGT 433
                 679*****************9987..444 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00013
   PF04513.7  62 dtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnld 119
                  t+l+++++++ + + ++  +l n+Lt +ns  ++ l  ++ +++t+  ++++l+ ++
  MMETSP0890-20130614|7661_1 701 MTNLEKSVSAMVQDIVNVL-ELYNDLTRMNSMWNDALKALAFVENTIPKIVSSLEVIE 757
                 3444444444433333332.36677777777777777777777777777777766553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.25u 0.43s 00:00:01.68 Elapsed: 00:00:01.39
# Mc/sec: 1453.33
//
Query:       MMETSP0890-20130614|7655_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-163  541.7   0.0   4.2e-163  541.5   0.0    1.0  1  PF00274.14 Fructose-bisphosphate aldolase class-I


Domain annotation for each model (and alignments):
>> PF00274.14  Fructose-bisphosphate aldolase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.5   0.0  3.1e-167  4.2e-163       1     348 []       9     359 .]       9     359 .] 0.99

  Alignments for each domain:
  == domain 1    score: 541.5 bits;  conditional E-value: 3.1e-167
  PF00274.14   1 eLietakaivapgkGilAaDestgtigkrlasigventeenrrayRellftteglgeyisgvIlfeetlyqktkdGkpfvellkekgivpGiKvDkglvplagtagetttqglDglaeRaaeykkaGarFaKwRavlkis...kntpselaieenanvlaryaaicqengLVPIvePeilldgdhdlercqevtekvlaavfkalsdhhVllegtllkpnmvtpGadckkkaspeevaeatvralrrtvPaavpgvvfLSGgqseeeatlnLnainklpkkkpwklsfSygrALqasvlkawkgkkenvkaaqeallkrakanseaslGkyekekeeeaakeslyeksyay 348
                 eL++ta+ai apgkGilAaDestgtigkr+a igven++enrr+yRe+lf+t+glg+yisg+I feetl++k + G+p+v+l+k++gi+pGiKvDkg++pl gt+get+tqg+D+l +R+a+y+ +GarFaKwRavl+i+    +tps lai++na++laryaaicq+ngLVPIvePe+l+dg h++e ++evtekv+aa++k lsdh+Vllegtllkpnmv +G+  +++a ++ va+atvr+l+ tvP+avpg++fLSGg+seeea+l Ln++nkl++kkpw+l+fSygrALq+s+lkaw gk+en+ +aq++ll+ra+ans+a+lGky++++  +aak+s+++++y+y
  MMETSP0890-20130614|7655_1   9 ELKQTAAAISAPGKGILAADESTGTIGKRFAPIGVENNQENRRKYREMLFKTPGLGQYISGAITFEETLFDKGTCGTPMVDLMKAQGIIPGIKVDKGVQPLFGTNGETVTQGIDDLGKRCAAYYAQGARFAKWRAVLHIKdssGATPSMLAIDQNAETLARYAAICQANGLVPIVEPEVLMDGGHSIEFAAEVTEKVIAACYKKLSDHKVLLEGTLLKPNMVRSGEAAAETAPMSAVAQATVRVLQHTVPVAVPGITFLSGGMSEEEASLALNEMNKLDTKKPWSLTFSYGRALQQSCLKAWLGKDENIPTAQKVLLERAQANSLANLGKYQGGAGGDAAKASTFVANYSY 359
                 89*****************************************************************************************************************************************8655789**********************************************************************************************************************************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.83
# Mc/sec: 1036.50
//
Query:       MMETSP0890-20130614|7663_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   40.7   0.0    2.3e-10   39.8   0.0    1.5  1  PF02671.16 Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.7e-14   2.3e-10       7      47 .]     455     495 ..     451     495 .. 0.97

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.7e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHH----S- CS
  PF02671.16   7 FLeiLhdyskeiisrtelyqeVadLlgghpdLleeFnqFLp 47 
                 F+ +L+ y++ + s++ ++ +V++Ll++hpdL+ +F  FLp
  MMETSP0890-20130614|7663_1 455 FVGLLKAYKNTQLSTNSVTRRVSSLLKDHPDLVLDFQKFLP 495
                 999*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:00.85
# Mc/sec: 1609.79
//
Query:       MMETSP0890-20130614|7664_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-18   64.3   0.0    5.2e-14   51.7   0.0    2.6  2  PF00168.25 C2 domain
    5.4e-06   26.3   0.2    1.9e-05   24.5   0.2    2.0  2  PF13499.1  EF-hand domain pair
    3.5e-05   23.2   1.7      0.018   14.8   0.8    2.8  2  PF13405.1  EF-hand domain
    0.00079   18.4   3.3     0.0016   17.4   0.9    2.6  3  PF00036.27 EF hand
  ------ inclusion threshold ------
      0.017   14.6   0.1       0.05   13.1   0.0    1.8  2  PF07039.6  SGF29 tudor-like domain
      0.058   12.6   2.8       0.16   11.2   1.9    1.6  1  PF13202.1  EF hand
      0.075   12.5   2.8        0.2   11.1   2.0    1.8  1  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   2.7e-17   5.2e-14       1      84 [.     547     636 ..     547     637 .. 0.94
   2 !    9.9   0.0    0.0003      0.59       2      54 ..     716     767 ..     715     779 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 2.7e-17
                 EEEEEEEESS--S-S.....TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTE.EEEEEEECHSSSCSEE---E CS
  PF00168.25   1 LkvkvieAknLpnkd.....kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelae.leleVkdedrfgkddflGea 84 
                 L++ +  +++L ++d       gtsdpy+++ +++++  ++ Trv+ ++l+PvWn+ +++++++++ ++ + l + d+dr ++ddf+G +
  MMETSP0890-20130614|7664_1 547 LRIVIWGGRGLIARDhsilsRAGTSDPYCRIFFEDEPELWRTTRVVFKNLDPVWNQCLSLPLNDPQKSRsFILVCADHDRSSRDDFMGSL 636
                 67888899999999999999999************99999*********************999999999******************75 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0003
                 EEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEE CS
  PF00168.25   2 kvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWnekft 54 
                  v v  Ak+L     +++ +p   + ++g +     T+v   t+nP+W e ++
  MMETSP0890-20130614|7664_1 716 LVGVWGAKDLATSFLKRKRNPRLICRVLGSNA-DDTTSVRLATTNPIWAEVLM 767
                 58899999999999999999999999999544.68*************99875 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.2   9.7e-09   1.9e-05       2      65 ..     272     331 ..     271     332 .. 0.89
   2 ?   -3.7   0.0       6.4   1.3e+04      42      54 ..     615     627 ..     602     629 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 9.7e-09
   PF13499.1   2 lkeaFkllDkdg.dgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                 l+++F+++D+ +  g+l++ +++ +lk+++s      + + + ++f e+D + dG l+f+Ef++ 
  MMETSP0890-20130614|7664_1 272 LRRVFDTYDTRKpAGQLTPMDFVDALKGSSS-----ALARNALELFVEFDGDEDGGLDFDEFRKG 331
                 799*************************975.....4555566669****************986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 6.4
   PF13499.1  42 ldyifkelDkngd 54 
                   +i+ ++D++++
  MMETSP0890-20130614|7664_1 615 RSFILVCADHDRS 627
                 4468899999987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0063        12       2      27 ..     272     298 ..     271     304 .. 0.88
   2 !   14.8   0.8     9e-06     0.018       4      28 ..     310     334 ..     307     342 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0063
                 HH---GCC---.----B---HHHHHHH CS
   PF13405.1   2 lreaFklfDkd.gdGkidaeELrdaLr 27 
                 lr++F+ +D+    G+++  +++daL+
  MMETSP0890-20130614|7664_1 272 LRRVFDTYDTRkPAGQLTPMDFVDALK 298
                 89*******555**************9 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 9e-06
                 ---GCC-------B---HHHHHHH. CS
   PF13405.1   4 eaFklfDkdgdGkidaeELrdaLrk 28 
                 e+F  fD d dG +d++E+r+ +r+
  MMETSP0890-20130614|7664_1 310 ELFVEFDGDEDGGLDFDEFRKGIRR 334
                 7999*****************9985 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.91   1.8e+03       2      11 ..     272     281 ..     271     283 .. 0.87
   2 ?   -2.3   0.0       1.7   3.3e+03      15      27 ..     286     298 ..     286     299 .. 0.90
   3 !   17.4   0.9   8.3e-07    0.0016       4      28 ..     310     334 ..     308     335 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.91
                 HHHHHHHHCT CS
  PF00036.27   2 lkeaFkefDk 11 
                 l+++F+ +D+
  MMETSP0890-20130614|7664_1 272 LRRVFDTYDT 281
                 799******8 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.7
                 SEBEHHHHHHHHH CS
  PF00036.27  15 GkIsfeEfkealk 27 
                 G+++  +f++alk
  MMETSP0890-20130614|7664_1 286 GQLTPMDFVDALK 298
                 899999****998 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 8.3e-07
                 HHHHHHCTTTSSEBEHHHHHHHHHH CS
  PF00036.27   4 eaFkefDkDgdGkIsfeEfkealkk 28 
                 e+F efD D dG ++f+Ef++ +++
  MMETSP0890-20130614|7664_1 310 ELFVEFDGDEDGGLDFDEFRKGIRR 334
                 89******************99987 PP

>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05      0.05      54     116 ..      83     146 ..      68     158 .. 0.82
   2 ?   -3.8   0.1       4.1   8.1e+03      40      57 ..     178     194 ..     169     205 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.6e-05
   PF07039.6  54 kiiplPk..klsketsklaefpkgskVLAlYPdTtaFYkAtVvatpkkkedeykleFeddeeedk 116
                 + + +P+  + +k+ +  ++ ++g+kV A+Y    ++Y A Vv++   k++  ++ F+d +e+++
  MMETSP0890-20130614|7664_1  83 RALAVPEleEGTKKINGIQSIKTGTKVRAVYLADRCWYGAQVVQV-YGKRNFANVIFVDYNENQN 146
                 5566777666677888999*************************9.8999999******998875 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.1
   PF07039.6  40 ddeeekktyklsrkkiip 57 
                 dde e +++++++++i p
  MMETSP0890-20130614|7664_1 178 DDE-EDEVVTTTKEEIQP 194
                 433.44577777777755 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.9     8e-05      0.16       4      23 ..     311     330 ..     309     335 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8e-05
                 HHHHH--S----B-HHHHHH CS
   PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                 +F +fD + DG ++++E+++
  MMETSP0890-20130614|7664_1 311 LFVEFDGDEDGGLDFDEFRK 330
                 5999**************86 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.0    0.0001       0.2      29      49 ..     310     330 ..     284     335 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0001
   PF13833.1  29 ilfrefDtdgdGkisfeEFcv 49 
                 +lf efD d dG ++f+EF +
  MMETSP0890-20130614|7664_1 310 ELFVEFDGDEDGGLDFDEFRK 330
                 699****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:01.04
# Mc/sec: 2006.95
//
Query:       MMETSP0890-20130614|7662_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-56  191.5   1.6    3.4e-33  114.5   0.6    2.2  2  PF02696.9 Uncharacterized ACR, YdiU/UPF0061 family


Domain annotation for each model (and alignments):
>> PF02696.9  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.7e-25   2.3e-21      86     167 ..     148     228 ..     141     241 .. 0.92
   2 !  114.5   0.6   2.5e-37   3.4e-33     169     487 .]     279     618 ..     263     618 .. 0.80

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 1.7e-25
   PF02696.9  86 faaqLGdGrgvllgdvrlkdkesldwqlkGaGltPysrfadGravLrssirevlasealhslGipttralslvllddskarr 167
                 f ++ GdGr+  +g+  ++ ++ ++ qlkG G tP+ r+adGravLrssire+lasea   l +pttral l+ ++   arr
  MMETSP0890-20130614|7662_1 148 FLSNPGDGRAQSIGE-VVVHGKRFEMQLKGGGRTPFCRGADGRAVLRSSIREFLASEASFFLQVPTTRALCLIRSKSETARR 228
                 66788**********.789999***************************************************999666655 PP

  == domain 2    score: 114.5 bits;  conditional E-value: 2.5e-37
   PF02696.9 169 eqePaavlirfapshirlGnfellryrhdlekliqLsdyvieeyfa................evki.qvedded..........kydeffrdvvsrvaklvaqWqavGfahGvlntdnmsilGltldyGPfafldkyepsfianhddtakrysfanqPavilWnLqrlakdLssllasea.....lneaLekyk.kvfltryaelmsqrLGvdldlekrlseqkelcdvlveelldilaaekvdynnffiqLqny.fikdksdtatLigafdeflnsaeteeafaagangklqqdvlkevppeelaarasllkkanPllvlrswvleevvdasekdgdtsalkkLyeklrnpy 487
                  +eP+a+  r+a s+ r+G+ +l+  r  +   +q  d  +++                   + +  + +dd+           +  +f ++  +r akl a+W  vG+++G +n dn  i GltldyGP ++++ky+ +f a +   ++ + fa qP  ++ n+  la++L ++   +      l+  +e+y  +vf     + +  +LG++++++k+l +++    +l +++ ++l++ ++dy+ ff+ L+   ++ +  +  ++  ++   l +  ++++ +        qd+   +++e+  + ++ +  +nP +vlr+ +  ++++a+  dgd+ ++++Ly  +++py
  MMETSP0890-20130614|7662_1 279 VNEPTAITTRVASSFCRVGHIDLFGRRAATALAQQSKDLYLRQHELqqivahciyredpdlwQSSFlEKNDDNGkfiystefkmAVLKFAQNTCDRLAKLAAEWLRVGYCQGNFNSDNCHIGGLTLDYGPMGYMEKYDRGF-AKWVGSGDHFAFAAQPRAAQANFATLARSLIPIFHEDEnsmdqLKALVEDYSsEVFQKAIDNTFLTKLGFSIEVDKKLRQNHI---MLWKNVENLLQEYEIDYTIFFRALSERpLTISATELVEIA-SYS-PLSEKSISDFTSW------LQDWRAALSNEDENTISKRMIIVNPKYVLRESMFVNAYEAAF-DGDLDPVRELYTLIKQPY 618
                 579*********************98887776667667655543333566677777766665333324444442555555565678899999*************************************************.68999****************************9988766555556679996379999999*****************94444...566667778999*************554444333333332.222.3555555555555......4899999**999999999999*****************9876.6***********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.85
# Mc/sec: 1824.05
//
Query:       MMETSP0890-20130614|7670_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-21   75.7   0.0    5.5e-21   75.0   0.0    1.3  1  PF01189.12 NOL1/NOP2/sun family
    3.3e-08   33.1   0.0    4.5e-08   32.6   0.0    1.3  1  PF13847.1  Methyltransferase domain
    1.4e-06   28.7   0.0    2.2e-06   28.1   0.0    1.4  1  PF12847.2  Methyltransferase domain
    0.00013   21.8   0.0    0.00018   21.4   0.0    1.2  1  PF13659.1  Methyltransferase domain
    0.00057   19.3   0.0     0.0013   18.2   0.0    1.6  1  PF09445.5  RNA cap guanine-N2 methyltransferase
     0.0037   17.6   0.1      0.014   15.7   0.0    1.9  2  PF08241.7  Methyltransferase domain
     0.0044   17.2   0.2      0.012   15.8   0.0    1.8  2  PF13649.1  Methyltransferase domain
     0.0093   15.5   0.0       0.02   14.4   0.0    1.6  1  PF13489.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.021   14.1   0.0    1.2  1  PF05175.9  Methyltransferase small domain
      0.039   12.8   0.0      0.066   12.1   0.0    1.4  1  PF00398.15 Ribosomal RNA adenine dimethylase
      0.065   12.8   0.0      0.091   12.3   0.0    1.3  1  PF13679.1  Methyltransferase domain
      0.071   12.4   0.0       0.12   11.6   0.0    1.4  1  PF03602.10 Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> PF01189.12  NOL1/NOP2/sun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   4.8e-24   5.5e-21      49     271 ..      64     266 ..      53     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 4.8e-24
                 EESS---GGG--------EEE--TTT---HHHH------EEEEES------HHHHHHH-T.T-EEEEE-SSCCCHHHHHHHHHH-----EEE-.-----GGGT-----BSEEEEE--------TTT-TTHHHH--TTHHHHHHHHHHHHHHHHGGGB....-----EEEEES---TTTTHHHHHHHHHH-TT-EE------S--...............--B----- CS
  PF01189.12  49 vgelvysigsLpefengavvvqdassqldaiaLapqedelilDlcaapgGKtthiaelmknegevvAvdrnkqrlkrvaanqqrlGvfnitvveedatqaaqkllgsefdrilldaPcsgtgvirrepkikwlrreadiaqlaelqkelLkaaidlvgidtkeggvlvYstCsvlveeneagiklflqkrpdvelvltklseskealkkh....rivkanlqllPhe 271
                  +++ +si+s  ef+ g++++q+assq ++ a  p++   +lD+ca+ g+Kt  ++       +v+A d+++ +l +   n +rlG    t     +t++      s fd +l+daPcs  gv+rr+p+++ +       ++ + q  +L+  ++ +       + l+Y+tCsv   en+ +   f  k+  +e ++++++e+ + ++ +    r   ++ q++ h 
  MMETSP0890-20130614|7670_1  64 KKKSNISIQSSDEFKLGHILIQSASSQCCVLAGRPKPGLEVLDACAGQGTKTLSLLSFG---CKVTAYDIDEAKLRQCRGNAKRLGYDIDTFS--FSTEP-----MS-FDTVLVDAPCSSSGVLRRHPSLRSN------LAIPKNQLSILEFYANYT------SNILLYATCSVFFIENQHVARTFSLKH-TAEFEPLPFDEKDNDFAWQpqqfRQAFSAYQSYHHP 266
                 56899***********************************************7666555...59**********************9866655..34444.....55.9*********************999......899999*****9999988......9*******************9999999.99********99988876665554444555555555 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0     4e-11   4.5e-08       2      84 ..      99     186 ..      98     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4e-11
   PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevl...............n 84 
                 k g++vlD+++G+G+ +l l      g+kv+  Di+e  +  ++ +a++lg++       d +++++  e  sfD v++++++                
  MMETSP0890-20130614|7670_1  99 KPGLEVLDACAGQGTKTLSLL---SFGCKVTAYDIDEAKLRQCRGNAKRLGYD------IDTFSFST--EpMSFDTVLVDAPCsssgvlrrhpslrsnL 186
                 67899***************9...359**************************......66666663..3378****9998775555555554444444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.9e-09   2.2e-06       2      54 ..     101     149 ..     100     201 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.9e-09
   PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeri 54 
                 g  +lD ++G+G  +l l++   g+kv+++D++e+ l+++r na  ++l+  i
  MMETSP0890-20130614|7670_1 101 GLEVLDACAGQGTKTLSLLS--FGCKVTAYDIDEAKLRQCRGNA--KRLGYDI 149
                 6789****************..**********************..4444444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.6e-07   0.00018       2      82 ..     102     172 ..     101     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.6e-07
   PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygp 82 
                 + vld ++G Gt +l +l  +  ++++ ++d++ ++ ++ n++r g +        d+  ++  + + sfd v+ + P   
  MMETSP0890-20130614|7670_1 102 LEVLDACAGQGTKTLSLLSFG-CKVTAYDIDEAKLRQCRGNAKRLGYD-------IDTFSFS--TEPMSFDTVLVDAPCSS 172
                 68*******************.***********************993.......4444444..77889999999999853 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0013       4      44 ..     104     144 ..     101     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.1e-06
   PF09445.5   4 vlDlfaGaGGnviqfanvfdkviaieinlsklklaqhNaev 44 
                 vlD++aG G ++  +   ++kv+a +i++ kl+++  Na+ 
  MMETSP0890-20130614|7670_1 104 VLDACAGQGTKTLSLLSFGCKVTAYDIDEAKLRQCRGNAKR 144
                 8**************************************85 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05     0.014       1      65 [.     105     165 ..     105     176 .. 0.82
   2 ?   -1.3   0.0       2.4   2.8e+03      48      65 ..     231     248 ..     217     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.2e-05
   PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvv 65 
                 Ld+ +G+g  +  l +  +++vt+ D++e+ l++++ ++k+ g +    d  ++  e  sfD v+
  MMETSP0890-20130614|7670_1 105 LDACAGQGTKTLSLLSF-GCKVTAYDIDEAKLRQCRGNAKRLGYD---IDTFSFSTEPMSFDTVL 165
                 788899***********.**********************99644...44444444455888886 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.4
   PF08241.7  48 vadaeelpfednsfDvvv 65 
                 +a +e lpf+++  D+ +
  MMETSP0890-20130614|7670_1 231 TAEFEPLPFDEKDNDFAW 248
                 677899999999888876 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-05     0.012       1      61 [.     104     159 ..     104     180 .. 0.83
   2 ?   -1.9   0.0       3.4   3.8e+03      66      77 ..     251     262 ..     214     272 .. 0.56

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-05
   PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaral 61 
                 +ld++ G G+ +  l      g   +v+++Di+e  l++++ ++++ g +++ +  + + +
  MMETSP0890-20130614|7670_1 104 VLDACAGQGTKTLSLLSF---G--CKVTAYDIDEAKLRQCRGNAKRLGYDIDTFSFSTEPM 159
                 79**********999955...5..89******************99888777765555444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.4
   PF13649.1  66 gefdlvvcagls 77 
                 ++f   ++a++s
  MMETSP0890-20130614|7670_1 251 QQFRQAFSAYQS 262
                 244444444444 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.8e-05      0.02      16      58 ..      94     136 ..      87     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-05
   PF13489.1  16 llarlkpggrvLDiGcGtGillellaengfdvtgvDpspaaig 58 
                 l+ r kpg +vLD  +G G  +  l  +g++vt++D+++a+  
  MMETSP0890-20130614|7670_1  94 LAGRPKPGLEVLDACAGQGTKTLSLLSFGCKVTAYDIDEAKLR 136
                 567889*************9999999***********876544 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.9e-05     0.021      31     108 ..     100     170 ..      88     191 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.9e-05
                 ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EEE---- CS
   PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeveekkfdlivsNPPf 108
                 ++ +vlD ++G G  +++l++ + +  vt++Di+++ ++ ++ n+++ + + ++++       +e+++fd++++  P 
  MMETSP0890-20130614|7670_1 100 PGLEVLDACAGQGTKTLSLLSFGCK--VTAYDIDEAKLRQCRGNAKRLGYD-IDTFSF----STEPMSFDTVLVDAPC 170
                 55679**************999988..*********************999.555443....3445788888888775 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.8e-05     0.066      27      66 ..      97     136 ..      67     163 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.8e-05
  PF00398.15  27 nlqekdtvlEigpGkGalTeeLakrakqvvalEidsklvk 66 
                 ++++ ++vl+  +G+G  T +L     +v+a++id+  ++
  MMETSP0890-20130614|7670_1  97 RPKPGLEVLDACAGQGTKTLSLLSFGCKVTAYDIDEAKLR 136
                 455999*****************************97555 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     8e-05     0.091      22      88 ..      97     156 ..      81     209 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8e-05
   PF13679.1  22 keegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfae 88 
                 + +  l+v+D++aG+g  + +l s      +++kv++ d++e+  ++++  a++lg ++ + +sf++
  MMETSP0890-20130614|7670_1  97 RPKPGLEVLDACAGQGTKTLSLLS------FGCKVTAYDIDEAKLRQCRGNAKRLGYDI-DTFSFST 156
                 5567789*********88888888......8*************************777.6666655 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.12      43      99 ..     101     154 ..      93     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
  PF03602.10  43 garvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlre 99 
                 g +vLD +aG G+  l  lS g+ +v++ + d++ +++++ n ++l+ +  ++++  
  MMETSP0890-20130614|7670_1 101 GLEVLDACAGQGTKTLSLLSFGC-KVTAYDIDEAKLRQCRGNAKRLGYD--IDTFSF 154
                 6789******************7.6999******************954..344433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 999.04
//
Query:       MMETSP0890-20130614|7667_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.5       0.23   11.0   0.3    1.6  1  PF11217.3 Protein of unknown function (DUF3013)
       0.11   12.4   0.1        1.7    8.5   0.0    2.1  2  PF09346.5 SMI1 / KNR4 family (SUKH-1)


Domain annotation for each model (and alignments):
>> PF11217.3  Protein of unknown function (DUF3013)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   3.4e-05      0.23      86     125 ..     128     167 ..     115     172 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.4e-05
                 -EEE-------BHHHH---HHHHHHHHH---CCCHHHTT- CS
   PF11217.3  86 vvipyegkkGlskevlaalveyLqdvldegesdLldFled 125
                 +v  y+  +Gl ++ ++++ +yL+++ d+ + d  dF+e+
  MMETSP0890-20130614|7667_1 128 AVYEYDLAEGLGAKLATSFSNYLEQFRDQLLADTFDFIEE 167
                 6778999******************************976 PP

>> PF09346.5  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.036   2.5e+02       4      40 ..      51      83 ..      48     101 .. 0.76
   2 ?    8.5   0.0   0.00025       1.7      81     129 ..     107     151 ..      99     152 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.036
   PF09346.5  4 eedlqefekdlgikLPndyreflkltsenniesggli 40
                e+++++f  +  ++LP ++ e++ +     +++g  +
  MMETSP0890-20130614|7667_1 51 EAEIAAFVRENRMQLPIALEELYNK----VCGGGLVW 83
                789999999999***********96....44444444 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00025
   PF09346.5  81 mwipiatdgggnyigidlspaseggqvilfgrdfdekfqiadsfgdFLl 129
                 ++ p++ d++  ++ +d ++      v+ ++  ++   ++a sf+ +L+
  MMETSP0890-20130614|7667_1 107 KLYPFCADDDESLLVVDCDD----EAVYEYDLAEGLGAKLATSFSNYLE 151
                 578****************9....89*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 544.36
//
Query:       MMETSP0890-20130614|7674_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-07   29.6   0.0    4.8e-07   29.0   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    1.1e-06   27.8   0.1    2.5e-06   26.7   0.0    1.5  2  PF00069.20 Protein kinase domain
     0.0011   18.8   0.1     0.0021   17.9   0.1    1.5  1  PF00638.13 RanBP1 domain


Domain annotation for each model (and alignments):
>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0     1e-10   4.8e-07       5      71 ..     116     184 ..     113     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1e-10
                 EEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHHHHHHHHHT-BTTB--BEEEBE CS
  PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefleeakimkklkhpnivkllgvct 71 
                 k + eG  + V++    +e++kk ++ a+K+lk ++++ee   e+f +e++++ +l+h+ni +l++v +
  MMETSP0890-20130614|7674_1 116 KPVAEGMQAWVYQVSRVSESNKKAQTFAIKMLKPQNAHEEseLEAFRREIHLLFHLRHENICHLVAVSS 184
                 667899999999999998999999********875544443399*********************9987 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.37   1.7e+03     169     171 ..      52      54 ..      14      94 .. 0.55
   2 !   26.7   0.0   5.5e-10   2.5e-06       5      69 ..     116     185 ..     113     193 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.37
                 HHH CS
  PF00069.20 169 vll 171
                 +l 
  MMETSP0890-20130614|7674_1  52 WLS 54 
                 322 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 5.5e-10
                 EEEE----EEEEEEEETTCCE....EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEE CS
  PF00069.20   5 eklGsGsfGkVykakkkktgk....kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfee 69 
                 + + +G  + Vy++++ ++++    ++A+K+lk ++++++ e +a+r E+++l +l+H+ni++l++v  +
  MMETSP0890-20130614|7674_1 116 KPVAEGMQAWVYQVSRVSESNkkaqTFAIKMLKPQNAHEESELEAFRrEIHLLFHLRHENICHLVAVSSS 185
                 67888999999988887776656669*********9999998888878****************998766 PP

>> PF00638.13  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   4.6e-07    0.0021      65     111 ..     108     154 ..     105     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.6e-07
                 E--TTS-EEE----TSEEEEEEEE-TTSS-EEEEEEEE-SSHHHHHH CS
  PF00638.13  65 vitkemklkplagsdrslvwtaadaadeeakleqlaikfkkkeeade 111
                 +++ ++  kp+a + +++v++ + +++ ++k++++aik+ k+++a+e
  MMETSP0890-20130614|7674_1 108 TVAAQVSEKPVAEGMQAWVYQVSRVSESNKKAQTFAIKMLKPQNAHE 154
                 57778888*********************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 649.01
//
Query:       MMETSP0890-20130614|7671_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0054   16.0   0.0      0.014   14.7   0.0    1.7  1  PF02845.11 CUE domain


Domain annotation for each model (and alignments):
>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-06     0.014       2      36 ..     409     443 ..     408     448 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1e-06
                 HHHHHHHHHHSTTS-HHHHHHHHHHSTTTHHHHHH CS
  PF02845.11   2 eqmletLkemFPdldeevIravLrasngnvEaain 36 
                 + ++e Lk++ P+++ e  + +L+ + g+v+   n
  MMETSP0890-20130614|7671_1 409 PGAVENLKSLLPHMTTEKAVNLLQTYRGDVNSIAN 443
                 5689**************************87555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.89
# Mc/sec: 1857.85
//
Query:       MMETSP0890-20130614|7677_1  [L=942]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-52  177.3   2.9    2.1e-52  177.3   2.0    1.8  2  PF00122.15 E1-E2 ATPase
    3.8e-23   82.9   0.0    1.4e-22   81.1   0.0    2.1  1  PF00702.21 haloacid dehalogenase-like hydrolase
    1.3e-13   51.4   0.0    2.4e-13   50.5   0.0    1.5  1  PF12710.2  haloacid dehalogenase-like hydrolase
    1.2e-11   43.8   0.0    2.7e-11   42.6   0.0    1.6  1  PF00690.21 Cation transporter/ATPase, N-terminus
    8.3e-05   22.1   0.1     0.0003   20.3   0.0    1.8  2  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   2.0   7.8e-56   2.1e-52       1     230 []      83     305 ..      83     305 .. 0.95
   2 ?   -2.5   0.1      0.67   1.8e+03      56      74 ..     605     623 ..     603     629 .. 0.90

  Alignments for each domain:
  == domain 1    score: 177.3 bits;  conditional E-value: 7.8e-56
  PF00122.15   1 viilavllnalvefvqeykaekalesLkrlspetaatvirdgkeqeipakeLvvGDiviiktGdrvpaDgrlieagslevdesalTGEslpvtksvelaergnkvfsgtvvlsgegkaiVtatgketeigkiarlvqeaks.aetplqkkldrlaklllilvlavailifiislvtdvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230
                 v++++ ++n +v++++e++a +a+++Lk+  +++ a v r+g+ + i+ak Lv+GD++ +k Gd vpaD+rl + + levd++alTGEslpvt+       +++v++g++v++ge++a V++tg+ t++gk a++v++a + +++++ + + + + +l++l++ ++++if + ++ +++ +lle+l + +++lv++iP ++ ++ t+++avg + la+k+++  +lsaiE+
  MMETSP0890-20130614|7677_1  83 VLMTLQAVNGIVGYLEEKSAGDAIAALKQSLSPR-ASVKREGEFRFIEAKFLVPGDVINLKLGDIVPADCRLQAGKPLEVDQAALTGESLPVTRG-----HNETVYMGSIVRRGEVEAWVIHTGARTFFGKAATMVNQAAEgQQGRFARIMFQNTMVLFVLSVSLCAVIF-VEVY-RSGLDLLESLSVVVVILVASIPIAMQIVSTTVMAVGGRTLAEKKAILSRLSAIEE 305
                 5788999***************************.***************************************99*******************.....************************************777776**********999999888888887777.5555.69***************************************************95 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.67
  PF00122.15  56 DiviiktGdrvpaDgrlie 74 
                 Div+ ++G  v  D+++++
  MMETSP0890-20130614|7677_1 605 DIVLTEPGLSVIIDAIITA 623
                 9*************99975 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   5.2e-26   1.4e-22       1     204 []     309     588 ..     309     588 .. 0.64

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 5.2e-26
                 ECEEEEECCTTTBETHHHH...........HHHHHHHHHHHHH.CCCCCSCCHHHHHHHHHHHHHH............CEECTCCHCCEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......................H...............HHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC................................SEEEEHHHTTSHHHHHHHHHHHTS......-GGGEEEEESSCTTHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
  PF00702.21   1 iktvvfDktGTLtegepsv...........lgnkaalalaaal.etgsehpigkavvaaakanstr............tgfatfigrgvsgkvdgavgnpewmtalglrviapdlvaaegqskgrtvvvla.......................q...............aralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi................................dslvfaevkPepklfvaaieeLqi......dpgevamvGDgvnDapalaaAg 204
                 ++++++DktGTLt+++ ++           +++  +l ++aa+  ++    i+  +v     +  +                                 +  ++++++r + + ++ +    kg+t +vl                                         +++gv ++ dp++ + ++++++ +++gi v ++tgd+   a  + k  g+                                d   faev Pe+k   +++e Lq       d++ v m+GDgvnDapal++A+
  MMETSP0890-20130614|7677_1 309 MDILCSDKTGTLTQNKLQLfepvlvdtnitANELVFLGALAAKrMSSGADAIDTVIVSSVADA--DrprlddfeeldfI------------------PFDPAIRRTEAR-LLGPDGQELRVTKGATKTVLNmcadknkitdqvllanetlakrgFrslgvavakggatasWQFCGVLSMFDPPRTDTKQTLEKARDMGIsVKMITGDQTAIAVETSKAIGLssrsepeildmkeftaaeklgvsaatnlcervD--GFAEVYPEHK--YRIVELLQHskryspDGHTVGMTGDGVNDAPALKKAN 588
                 6899*****************999999999444444444444301111222233333333332..22244333333220..................222222222233.11222222223333333333322333333322222222222222022222333333333399************************************************************9988888888888888888554..88888*****..8899998888889889999****************97 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   8.9e-17   2.4e-13       1     191 []     312     585 ..     312     585 .. 0.72

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 8.9e-17
                 EEE------B---................HHHHHHHHH--H.........HHH....................................................................HHHHHHHHHHHHT-HHHH----HHHHHHHHHH...............H--BHHHHHHH......HTTEEEE-SS-HHHHHHH.....................HH---EE--B--GGG-----...............HH----HHHHHHHHHSHHHHHH.HH---TT----S--EE---GGGHHHHH CS
   PF12710.2   1 avFDkDGTLtedd.tdflryllk......lldvlgealakdasl......aslkdst............................................................cltlsdpkdllellaeyggirviglaarylealake.ieea.......klfegfipdaaellkelheaglrvvvlsgdprliakpv.....................akelgidevnvlateledeg...............ggkvdgritgkldgKaraverl.vvlaykqvggrivvaiGDsanDlpalk 191
                 +++Dk+GTLt+++   f ++l++       l  lg+  ak++s+      +     +                                                            +++ ++    +e+la   ++ ++ l  +  ++ a   ++++       + +     d++++l++ +++g++v +++gd  ++a++v                                        +               +++ ++++ ++ + K r+ve l  ++ y   +g+ v++ GD+ nD palk
  MMETSP0890-20130614|7677_1 312 LCSDKTGTLTQNKlQLFEPVLVDtnitanELVFLGALAAKRMSSgadaidT-----VivssvadadrprlddfeeldfipfdpairrtearllgpdgqelrvtkgatktvlnmcadkNKITDQVLLANETLA---KRGFRSLGVAVAKGGATAsWQFCgvlsmfdPPR----TDTKQTLEKARDMGISVKMITGD--QTAIAVetskaiglssrsepeildmkeF------------------TaaeklgvsaatnlceRVDGFAEVYPE-H-KYRIVELLqHSKRY-SPDGHTVGMTGDGVNDAPALK 585
                 59***********88888888889999877777777776666655444442.....155566777788888999999******************************9999777777666666666666666...688999999999988888788645555444444....5666***998999**********..4444442233335555555555444440..................144555555544444444557777777.5.******99644444.566788*************97 PP

>> PF00690.21  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   9.9e-15   2.7e-11      16      68 ..      20      71 ..       5      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 9.9e-15
  PF00690.21 16 dlenGLtsdeaaerlkkyGpNelpepkkksllrlflrqfkdplvilLlvaaiv 68
                +   GL+++eaa+rl++yGpN l e++kk+ +  fl+ f+ p+ i+ + a +v
  MMETSP0890-20130614|7677_1 20 TGDAGLSEAEAAARLEQYGPNLL-EEPKKNEILVFLSFFTGPMPIMIWLATLV 71
                5678*******************.8999999999****************987 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.45   1.2e+03      19      54 ..     473     508 ..     470     517 .. 0.82
   2 !   20.3   0.0   1.1e-07    0.0003     194     243 ..     560     609 ..     535     620 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHTT-EEEEEESS-HHHHHCCHCHTTC CS
   PF08282.7  19 etkeaikklqekgikvviaTGRslsevlplleelgl 54 
                  tk++++k+++ gi v   TG ++  + +  +++gl
  MMETSP0890-20130614|7677_1 473 DTKQTLEKARDMGISVKMITGDQTAIAVETSKAIGL 508
                 68999**********999999888777777776665 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.1e-07
                 HHHHTT--GGGEEEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE-- CS
   PF08282.7 194 lakalnisleeviafGDgeNDieMLelaglgvAmgnaspevkaaAdyvtd 243
                   k+++ +   v   GDg ND + L+ a++g+A++ +++ + aaAd v +
  MMETSP0890-20130614|7677_1 560 HSKRYSPDGHTVGMTGDGVNDAPALKKANIGIAVEGSTDAARAAADIVLT 609
                 346677777788899*******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.29u 0.36s 00:00:01.65 Elapsed: 00:00:01.13
# Mc/sec: 1980.15
//
Query:       MMETSP0890-20130614|7681_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   30.4   0.0    6.2e-07   28.9   0.0    1.7  2  PF08372.5 Plant phosphoribosyltransferase C-terminal


Domain annotation for each model (and alignments):
>> PF08372.5  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   4.5e-11   6.2e-07      64     151 ..     129     218 ..     116     222 .. 0.88
   2 ?    1.2   0.0     0.015     2e+02      42      66 ..     209     239 ..     202     241 .. 0.63

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 4.5e-11
   PF08372.5  64 lRsvagrvqtvvGdvAtqgErlqallswrdpratalflllclvlavvlyvvpfkvlallaglyllrhprfRsklPs..vplnFfrrLPsk 151
                 lR+  g++q+ + d  t   r +al +w dp +t +f+  +l++a+++ + p++ l  l+++y+   p f ++  s  v+ ++f  LP++
  MMETSP0890-20130614|7681_1 129 LRAGLGKAQAQLHDYNTALLRCRALHRWTDPIRTLFFVSGLLFAALCCATLPLNWLFALSICYFGSDPLFEKRGLSraVSDEYFDGLPTS 218
                 7888899***************************************************************88654411455799999876 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.015
   PF08372.5  42 dEEfDtfP.ssrdadv.....vrmRYdrlRs 66 
                 dE fD +P ssr +       +  RYd l +
  MMETSP0890-20130614|7681_1 209 DEYFDGLPtSSRTHGNvyfaaLCRRYDNLEN 239
                 899*****54444433022224568887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1421.57
//
Query:       MMETSP0890-20130614|7684_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.8   0.3      0.019   13.7   0.2    1.0  1  PF11940.3 Domain of unknown function (DUF3458)


Domain annotation for each model (and alignments):
>> PF11940.3  Domain of unknown function (DUF3458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.4e-06     0.019     297     340 ..      22      64 ..      10      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-06
                 --TTHHHHHHHHHHHTTTT---HHHHHHHHHHHH.T-HHHHT-- CS
   PF11940.3 297 predalervkallehpaFdlknPNrvRaligaFaaanpaafhaa 340
                 + + ++ rv+++ ++ + +lk+ Nr++al ga   +n   f+a+
  MMETSP0890-20130614|7684_1  22 NVATTAHRVAKIGRKRSHQLKQDNRMKALTGACL-NNLNDFKAQ 64 
                 3367899*************************99.9*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 250.87
//
Query:       MMETSP0890-20130614|7683_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 990.69
//
Query:       MMETSP0890-20130614|7682_1  [L=1544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-19   67.7   0.0    1.5e-17   63.3   0.0    2.3  1  PF01094.23 Receptor family ligand binding region
      3e-07   29.9   0.5    3.5e-05   23.2   0.4    2.4  1  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain
    0.00024   20.3   2.7       0.12   11.7   0.2    2.8  2  PF02825.15 WWE domain
    0.00065   19.0   0.1     0.0019   17.5   0.1    1.8  1  PF13458.1  Periplasmic binding protein
     0.0041   17.0   0.1      0.014   15.2   0.1    1.9  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
  ------ inclusion threshold ------
      0.026   14.2   0.3      0.078   12.6   0.2    1.8  1  PF12575.3  Protein of unknown function (DUF3753)
       0.21   11.0   1.8       0.23   10.9   0.0    1.8  2  PF06365.7  CD34/Podocalyxin family


Domain annotation for each model (and alignments):
>> PF01094.23  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   7.8e-21   1.5e-17      64     341 ..     483     806 ..     477     813 .. 0.79

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 7.8e-21
                 HHHHHHHHTTTT--EEESS---GGGG-.TTTTTTEEESS--THHHHHHHHHHHHH----EEEE------------HHHHH..--------EE--......................-------------SHHHH-.--.-----EE----SSHHHHH----..---.------EE---------..-------------EEEEE--------..HHHHHT--TTT-T.................................-----S-------HHHHHHHHHHHHHHHHHHHHHH-------HHT----HHHHHHHT-EE-------EE---------- CS
  PF01094.23  64 sdavarlanlfniPqisygatspelsdsknryptfaRtvpsdtkqaqaiadiikhfgWnkvallyddddygegglealee..elreaggnvvak.....................vsekisndsdaeellkelkd.ik.skarvivlfcssedlrqilqaavelgm.nngeyvwilsdlwsdslldeenekaeeaakgvlgftlkspnspgf..reflerlkklanq.................................neteasdeeisafallvyDaVyllahAlnkllredpdqtrglikwedgkqllrylrnvnfegltGevvfddnggrrpny 341
                 ++ +a   +++n+ ++s+++t++el+d  n yp++aR+v s +  + a a++ + +gW++va++y+d+ +g + ++++ +    +e gg+++                            +  +  ++ ++el d ++ ++a +i+l + +e+ r +++aa+++g   + +y wi      ++l+d   e + +a++g lg     ++ p++   + ++++ + +++                                   t+++ ++ s++ +  +DaV++la+++ +  ++  d +++                 + eg++G++ + ++ g+r n+
  MMETSP0890-20130614|7682_1 483 ATVAAATGRDANYIIVSPSSTATELND-DNAYPSVARLVTSENLIGSATARLAEDYGWDRVAMIYEDSIWGSSAAQGFVDrhLSNEFGGTILGDgnciadscahyalhpetnqpvG-LSVPAGYVTTDTVNELLDfVQtNGASIIFLIFFDEEQRLFFTAANDRGFvETPGYGWITNLPTDSALIDSTGEPILDAINGQLGSLGFVEDFPDYgeADLYTSYLDIRSSsvsieacsiegrtnaapdddnpispnvfgtfdvCDTDNDPTTSSTYGQVWFDAVLVLAYGIARSSNTIHDMYNSI-------------ISQSVEGISGTIILSSSTGDRLNR 806
                 56677777889****************.8*****************************************9999777754214555555555445666669999999999999952.4444444455555555555554************************************9999999988777777777777777766533333333003344444444444788888888899999999**************888999999999999999**************88877777766.............45556999***9999999999665 PP

>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4   1.8e-08   3.5e-05      32     130 ..    1394    1489 ..    1385    1534 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.8e-08
                  EEEEEEEEEEEE---CCCCGCCGG.SS-EEEEEE---GGG-------------TTS-----------EEBSSHHHHHGGG---SSS----EEEEEEE--- CS
  PF00644.15   32 klkileifrvqregeaerfqekkk.lrnrrlLwHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSanYcktseangeglllLaeValGd 130 
                  +++i  i r+q+ + ++ +++    +++ r  +HG+  ++ ++il  GL  +  +++    ++G+G+ f  d+skS +  + +    +++++++++ +  
  MMETSP0890-20130614|7682_1 1394 RYSISSILRIQHFDRWSVYRTYGIgKKEIRPVFHGTTREAAEKILATGLNRDYAKNS----VYGRGVNFFLDSSKSCHRDYGNLGIDSKYVFVCSIFVNS 1489
                  789999**************99875566899******************55544554....5**************965555556668888888877666 PP

>> PF02825.15  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   6.1e-05      0.12      17      72 .]    1061    1126 ..    1038    1126 .. 0.78
   2 !    8.0   0.1   0.00086       1.7      47      70 ..    1227    1250 ..    1216    1253 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-05
  PF02825.15   17 gkWrpYspavsehIenayaaker......tlev..difgrpytidfksmtqlreetg..ttreVrR 72  
                  g W +Ys+ ++e + + +   +r      +l v  +   + y i++  mtq+r + +   tr+VrR
  MMETSP0890-20130614|7682_1 1061 GNWVQYSDVDQERLCDLWTLVQRdeatspVLRVdaSDASAAYAINVDRMTQTRIGIKdaGTRQVRR 1126
                  78999*99997666655544444444889777722556789************8877777*****9 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00086
  PF02825.15   47 grpytidfksmtqlreetgttreV 70  
                   ++y id++++ q+r +tg++r++
  MMETSP0890-20130614|7682_1 1227 EVQYEIDIRTFEQTRLDTGKVRCI 1250
                  579****************99987 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   9.5e-07    0.0019      79     225 ..     478     654 ..     466     701 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.5e-07
                 ---HHHHHHHHHH..HT-EEEE-S---....----------B---HHHHHHHHHHHHHH.-----EEEEEESS----HHHHHH..HHHHH-----B-........................--EEE-TT----HHHHHHHHH.----EEEE-----HHHHHHHHHHC-----SS-B---- CS
   PF13458.1  79 savaaavapvlek..dgvplispasle....geecspnvfslgatysqqasalvdylakelggkkvalvgsdyaygregiaal..raalkaaGgevv........................geeyvplgttdfssqvaqika.agpdavlltgwgadavallkaareaGldakkipvvst 225
                 s  a a + +++   ++ +++sp+s++    +++++p v +l  + +  +sa+++ la+++g  +va+++ d+ +g ++++++  r +  + Gg+++                         +++    ttd  + ++++++  g+ +++l ++ +    +++aa + G+   ++p++++
  MMETSP0890-20130614|7682_1 478 SIEARATVAAATGrdANYIIVSPSSTAtelnDDNAYPSVARLVTSENLIGSATAR-LAEDYGWDRVAMIYEDSIWGSSAAQGFvdRHLSNEFGGTILgdgnciadscahyalhpetnqpvgLSVPAGYVTTDTVNELLDFVQtNGASIIFLIFFDEEQRLFFTAANDRGFV--ETPGYGW 654
                 4445555555544114445555664442233789999999999999999999999.8************************996566666777777777777777777777777666554322222222355444444444425666666666666666677777777766..3555555 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.4e-06     0.014      43      93 ..     869     919 ..     846     927 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.4e-06
   PF06024.7  43 apknditeeeskaekaqatnillisllavlcvlvllyviyYFvilrerqks 93 
                  ++++ +++es+++ +++ +i++i+++   cvl  l  i+ +++ r++++ 
  MMETSP0890-20130614|7682_1 869 DSTQEENNDESNNKTKSNSSIIIIIVVIAACVLCCLGTIFLYIVRRQQNQF 919
                 445555555566667788899999999999************999988764 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     4e-05     0.078      36      69 ..     875     911 ..     868     912 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4e-05
   PF12575.3  36 klkkkkensssniii.liiliiivvivvll..vflyL 69 
                 ++++++++++sn+ i +ii++i++ ++  l  +fly+
  MMETSP0890-20130614|7682_1 875 NNDESNNKTKSNSSIiIIIVVIAACVLCCLgtIFLYI 911
                 3344444444444440555555555555557778876 PP

>> PF06365.7  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.23      83     130 ..     870     917 ..     849     927 .. 0.62
   2 ?   -2.2   0.4       1.3   2.5e+03     170     199 ..    1001    1026 ..     993    1028 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   PF06365.7  83 dlkeqdssskeekedk..lpllialvtlgaillLiialltlYclhqRrsq 130
                  ++e+++ + ++k+ k    ++i +v+++ +++L  +++   ++++R+  
  MMETSP0890-20130614|7682_1 870 STQEENNDESNNKT-KsnSSIIIIIVVIA-ACVLCCLGTIFLYIVRRQQN 917
                 33333333333333.33345888888888.78887777765555555443 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.3
   PF06365.7  170 lNgelqdnGtGswivplgnltkedleeeeD 199 
                   N+++ d     +i ++++ tk+d   +eD
  MMETSP0890-20130614|7682_1 1001 NNNNTSD---DAAIELIDHTTKDDA-KQED 1026
                  4555555...578999********9.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.37u 0.44s 00:00:02.81 Elapsed: 00:00:01.48
# Mc/sec: 2499.98
//
Query:       MMETSP0890-20130614|7689_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.4   0.0      0.048   12.8   0.0    1.2  1  PF06730.6 FAM92 protein


Domain annotation for each model (and alignments):
>> PF06730.6  FAM92 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.5e-06     0.048      63     138 ..      44     123 ..      31     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.5e-06
   PF06730.6  63 einlklGlksfadevaklqdyrdieverleakvveelkayet..lvksk..rddlklaliardkeakrlrqlerlkqkns 138
                  in+k  ++++  ++a l d +     r  + + ++l++++    +k +  rd+lk  ++ r++   + + l  ++q + 
  MMETSP0890-20130614|7689_1  44 PINNKARIQDYQTALATLSDRHLRRTTRDGSNIFHHLAHFGDdvACKLTlsRDKLKSLVVQRNRAGIHPAALAIVRQNFD 123
                 57899999********************************96325665455*************9999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 691.52
//
Query:       MMETSP0890-20130614|7687_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-29   99.8   0.4    5.2e-29   99.4   0.3    1.2  1  PF02560.9  Cyanate lyase C-terminal domain
    0.00053   19.6   0.1    0.00087   18.9   0.0    1.3  1  PF01381.17 Helix-turn-helix
  ------ inclusion threshold ------
      0.063   13.2   0.0       0.11   12.4   0.0    1.4  1  PF12844.2  Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF02560.9  Cyanate lyase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.3   1.1e-32   5.2e-29       4      71 ..      79     147 ..      76     149 .. 0.95

  Alignments for each domain:
  == domain 1    score: 99.4 bits;  conditional E-value: 1.1e-32
   PF02560.9   4 eavptdPliYRlyEvvlvygetlkelieEkfGdGimSaIdfkldvekeedpkgd.rvvitlnGKfLpyk 71 
                   + ++P +YR yE+v++yg ++k++++EkfGdGimSaId++++v++ +  kg+ rvvitlnGKfLp+ 
  MMETSP0890-20130614|7687_1  79 SDILKEPQVYRTYEAVMHYGLAIKNIVNEKFGDGIMSAIDYYMSVKEIKGVKGErRVVITLNGKFLPFI 147
                 56889*************************************************9************85 PP

>> PF01381.17  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.9e-07   0.00087       6      48 ..      16      58 ..      13      65 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-07
                HHTT-THHHHHHHHTS-HHHHHHHHTTCCGSBHCCHHHHHHHC CS
  PF01381.17  6 kqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaL 48
                k+ g +  eLAe +Gv+  ++++i  G+++  + t  kl+ a+
  MMETSP0890-20130614|7687_1 16 KASGKTYDELAEICGVTNVYLAQILLGQAQLKPATKAKLSAAM 58
                6889**************************9999988888876 PP

>> PF12844.2  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05      0.11       9      44 ..      16      52 ..      13      68 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-05
   PF12844.2  9 ealgltqeelaeklgisrssiskiEnGkr.dpsadkl 44
                +a g t +elae +g++  ++ +i  G++   +a k+
  MMETSP0890-20130614|7687_1 16 KASGKTYDELAEICGVTNVYLAQILLGQAqLKPATKA 52
                78899***********************966667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 612.84
//
Query:       MMETSP0890-20130614|7686_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-30  104.2   0.1    3.7e-30  103.2   0.0    1.6  1  PF13225.1 Domain of unknown function (DUF4033)


Domain annotation for each model (and alignments):
>> PF13225.1  Domain of unknown function (DUF4033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   2.7e-34   3.7e-30       1      84 [.     158     250 ..     158     252 .. 0.85

  Alignments for each domain:
  == domain 1    score: 103.2 bits;  conditional E-value: 2.7e-34
   PF13225.1   1 wlvgpseveeve.........ekekkeseksgvkvkkCryLeesgCvgvCvnlCKlptqeflkeelGlpltmePnfedlscqmvfgqeppele 84 
                 wl+g+ e+ + +         ++   +++++ +++k+Cr+Lee+gC+++Cvn+CK+ptq+f+++++G+p t+ Pn+edlscq++fg +p+ ++
  MMETSP0890-20130614|7686_1 158 WLIGRIELLDDDyddkkqdaiRNRIGDGRNQLIQIKRCRFLEEAGCASICVNSCKMPTQDFFNHDMGVPCTIVPNYEDLSCQFKFGYQPTIAD 250
                 666666654444455555565666778999***********************************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.65
# Mc/sec: 1168.68
//
Query:       MMETSP0890-20130614|7692_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-38  127.7   0.2    2.7e-14   52.2   0.0    4.2  4  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.024   14.0   0.3        9.2    5.7   0.0    3.3  4  PF05344.6 Domain of Unknown Function (DUF746)
      0.045   13.2   1.4       0.62    9.5   0.2    2.5  3  PF09920.4 Uncharacterized protein conserved in archaea (DUF2150)
      0.072   12.9   0.4          3    7.7   0.0    2.8  3  PF11620.3 GA-binding protein alpha chain
       0.24   11.1   2.6        1.5    8.5   1.8    2.0  1  PF04402.9 Protein of unknown function (DUF541)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06     0.004      21      39 ..       4      22 ..       2      33 .. 0.86
   2 !   52.2   0.0   9.7e-18   2.7e-14       1      48 [.      34      81 ..      34      82 .. 0.98
   3 !   51.4   0.0   1.7e-17   4.7e-14       1      49 []      84     132 ..      84     132 .. 0.99
   4 ?    2.8   0.0     0.026        72      23      42 ..     135     154 ..     133     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-06
   PF13475.1 21 eeLknDkeivlkAvkqngs 39
                +eLk+D eivl+Avk++ +
  MMETSP0890-20130614|7692_1  4 DELKSDHEIVLQAVKNDAD 22
                79*************9975 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 9.7e-18
   PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
                Dr++vl+av+  g  l+ + +eLk+D+eivl+Avk++g al+ya +eL
  MMETSP0890-20130614|7692_1 34 DRDFVLAAVQERGLTLRDAADELKSDREIVLQAVKNDGLALEYAADEL 81
                9*******************************************9998 PP

  == domain 3    score: 51.4 bits;  conditional E-value: 1.7e-17
   PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                 DrE+v  av +ng al+y+ + Lk+D+eivl+A++++ sal++a +e++
  MMETSP0890-20130614|7692_1  84 DREVVAIAVANNGLALEYAADDLKSDREIVLAAIQSDFSALEFATDEFK 132
                 9*********************************************997 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.026
   PF13475.1  23 LknDkeivlkAvkqngsals 42 
                 +k+D++++  ++ +n + l+
  MMETSP0890-20130614|7692_1 135 FKSDRDLIDFILLRNREELE 154
                 89******999999988543 PP

>> PF05344.6  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.014        38      19      35 ..       2      18 ..       1      19 [. 0.91
   2 ?    5.7   0.0    0.0034       9.2      14      35 ..      47      68 ..      43      69 .. 0.90
   3 ?   -2.2   0.0         1   2.8e+03      16      32 ..      74      90 ..      72      95 .. 0.77
   4 ?   -0.1   0.0      0.22     6e+02      14      32 ..      97     115 ..      90     119 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.014
   PF05344.6 19 aadqlgtdegiiakwvr 35
                aad l++d++i+ + v+
  MMETSP0890-20130614|7692_1  2 AADELKSDHEIVLQAVK 18
                89***********9986 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0034
   PF05344.6 14 lslaeaadqlgtdegiiakwvr 35
                l l +aad l++d +i+ + v+
  MMETSP0890-20130614|7692_1 47 LTLRDAADELKSDREIVLQAVK 68
                6789**************9986 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1
   PF05344.6 16 laeaadqlgtdegiiak 32
                l+ aad l +d + +a 
  MMETSP0890-20130614|7692_1 74 LEYAADELTSDREVVAI 90
                66799999999998875 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.22
   PF05344.6  14 lslaeaadqlgtdegiiak 32 
                 l l+ aad l++d +i+  
  MMETSP0890-20130614|7692_1  97 LALEYAADDLKSDREIVLA 115
                 567889********99975 PP

>> PF09920.4  Uncharacterized protein conserved in archaea (DUF2150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.54   1.5e+03      64      84 ..       2      21 ..       1      34 [. 0.75
   2 ?    9.5   0.2   0.00023      0.62      50      84 ..      38      72 ..      36     112 .. 0.79
   3 ?    2.4   0.0     0.033        89      53      81 ..      91     119 ..      85     133 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.54
   PF09920.4 64 aleeleevreivleeveiide 84
                a++el++ +eivl+ v+  d 
  MMETSP0890-20130614|7692_1  2 AADELKSDHEIVLQAVKN-DA 21
                778888888899888874.33 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00023
   PF09920.4 50 iiaayenkelskeealeeleevreivleeveiide 84
                ++aa++++ l+  +a++el++ reivl+ v+ ++ 
  MMETSP0890-20130614|7692_1 38 VLAAVQERGLTLRDAADELKSDREIVLQAVKNDGL 72
                7899************************9997644 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.033
   PF09920.4  53 ayenkelskeealeeleevreivleevei 81 
                 a+ n+ l  e a++ l++ reivl+  ++
  MMETSP0890-20130614|7692_1  91 AVANNGLALEYAADDLKSDREIVLAAIQS 119
                 577899999***************98775 PP

>> PF11620.3  GA-binding protein alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.078   2.1e+02      42      56 ..       6      20 ..       3      30 .. 0.60
   2 ?    7.7   0.0    0.0011         3      33      58 ..      45      72 ..      30      91 .. 0.88
   3 ?   -0.9   0.0      0.55   1.5e+03      15      50 ..     106     143 ..     102     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.078
                --TTSBTTT------ CS
   PF11620.3 42 LepdksLvdqgvkte 56
                L++d+++v q+vk +
  MMETSP0890-20130614|7692_1  6 LKSDHEIVLQAVKND 20
                555555555555554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
                -EEEETTEE..--TTSBTTT-------- CS
   PF11620.3 33 yeiyLqDiq..LepdksLvdqgvkteGl 58
                  + L D+   L++d+++v q+vk +Gl
  MMETSP0890-20130614|7692_1 45 RGLTLRDAAdeLKSDREIVLQAVKNDGL 72
                56788998778****************7 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.55
                 ---HHHHSHHHH-S--SS-EEEETTEE..--TTSBTTT CS
   PF11620.3  15 lkaLkklleerlqvsLdkyeiyLqDiq..LepdksLvd 50 
                 lk+ ++++   +q + ++ e+   +++   ++d++L+d
  MMETSP0890-20130614|7692_1 106 LKSDREIVLAAIQSDFSALEFATDEFKsgFKSDRDLID 143
                 56667788888888888888888888777888888887 PP

>> PF04402.9  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.8   0.00054       1.5      18      58 ..      38      82 ..      27     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00054
   PF04402.9 18 lslavesegedaaeaaeelservnrvlaalkkagie....ekdiq 58
                +  av+++g ++ +aa+el ++++ vl+a+k+ g+     +++++
  MMETSP0890-20130614|7692_1 38 VLAAVQERGLTLRDAADELKSDREIVLQAVKNDGLAleyaADELT 82
                5679***************************99976545333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.59
# Mc/sec: 686.41
//
Query:       MMETSP0890-20130614|7693_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-11   41.7   0.1    1.1e-10   40.8   0.1    1.5  1  PF08159.7 NUC153 domain


Domain annotation for each model (and alignments):
>> PF08159.7  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1   7.8e-15   1.1e-10       1      29 [.     165     193 ..     165     194 .. 0.97

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 7.8e-15
   PF08159.7   1 DdRFkalFedpdFaiDetspeFkklnpse 29 
                 D+RF++lF+d +++iDe spe+ +++ps+
  MMETSP0890-20130614|7693_1 165 DNRFSKLFTDKHYQIDEQSPEYLARHPSA 193
                 9**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.75
# Mc/sec: 1108.71
//
Query:       MMETSP0890-20130614|7695_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:01.01
# Mc/sec: 1563.56
//
Query:       MMETSP0890-20130614|7699_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   46.3   0.0    3.1e-12   45.5   0.0    1.5  1  PF00018.23 SH3 domain
    7.9e-09   34.7   0.0    1.3e-08   34.1   0.0    1.4  1  PF07653.12 Variant SH3 domain


Domain annotation for each model (and alignments):
>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   4.6e-16   3.1e-12       1      48 []     368     413 ..     368     413 .. 0.93

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 4.6e-16
                 EESS-BE-SSTTS-EB-TT-EEEEEEESSSSEEEEEETTTTB---EEG CS
  PF00018.23   1 iAlYDYearesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +Al+ Y+a ++++Lsf +GD+i+v+ k+++gWw g+l      G +Ps
  MMETSP0890-20130614|7699_1 368 VALHAYTADRAGDLSFSPGDIIQVIRKKDNGWWIGQLGP--NSGEFPS 413
                 7***********************************996..4788886 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.9e-12   1.3e-08       2      53 ..     367     417 ..     366     419 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.9e-12
                 EEE-S-B--SS-----B----EEEEE.E-S----BEEEE-TT---B--HHHH CS
  PF07653.12   2 vraiedyvaedpeeLslkkGDvikvlgskesdgwwegesgGrvGlfPsslVe 53 
                 v+a+  y+a   ++Ls+  GD+i+v+ +k+++gww+g  g   G fPs++V+
  MMETSP0890-20130614|7699_1 367 VVALHAYTADRAGDLSFSPGDIIQVI-RKKDNGWWIGQLGPNSGEFPSNYVS 417
                 688899********************.9***********9999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:01.00
# Mc/sec: 1016.06
//
Query:       MMETSP0890-20130614|7701_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 538.20
//
Query:       MMETSP0890-20130614|7698_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-92  308.0   0.0    7.9e-92  307.8   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.8   0.0   5.8e-96   7.9e-92      88     462 .]       6     405 ..       1     405 [. 0.90

  Alignments for each domain:
  == domain 1    score: 307.8 bits;  conditional E-value: 5.8e-96
                 H.HHHHHHHHHHHHHHHHHH.C-CCE.EEEC...TTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHH....TS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TT...S-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----T.TST.T------SS.HHHHHHHHHHHHHHHH---EEEE--E........E.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEE.EEESSHHHHHHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-..TT--TTTS-B---TTTEE--BSSHHHHHHTEEEEEE CS
  PF00171.17  88 a.evaeaidvlryyagaaek.legev.lpss...egkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleea....glPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVled...aDldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdp.lde.dtdlGPlis.kkqlervekyieeakeegaklllGGe........eekaglekgyfvePtvladvtpdmriaqeEiFGPVlsv.ikfkdeeeaielaNdteyGLaaavftedleraervaerleaGnvwiNds..stgdaealpfgGvkqSglGreggkegleeytevktv 462
                 + e+  +++ l++ a+ ae+ l+ e   p +    +kk  v + PlGv++ai+PWN+P++ + + + +al aGN++++K se +++++ ++ + l+++    g P ++++++ g  +++g+alv+ ++v+k+ f+Gs +vg k++++a+k+l++v+lElGGk+p+++++d   a+l++ v+  ++g+f+++GQ+C  ++r++V ++iyd f  k+++ a+kl vG   l++ + d G+++    + er+++++++a+++gak+l+GG+          +++++kg f++Pt+la+v++++ria+eEiFGP++++ ++f++++++i++ Nd++++L++  f++d +ra+ +a+rl+aG+  +Nd   +t+  ++lpfgG k+Sg+ r++g+egl+  + +++v
  MMETSP0890-20130614|7698_1   6 FgEILVTCEKLKWLAENAEQiLAPEPrAPGTtviFTKKVRVEYPPLGVIGAIVPWNYPFHNVLNPTSAALTAGNAIIIKVSEYASWSTRYIGQGLKQClaavGAPLDLIQFIYG-YADTGAALVS-SGVEKLIFVGSPQVGAKVMETASKTLTPVVLELGGKDPFVICDDilpAELERIVQVSLRGVFQSMGQNCAGPERFYVGNKIYDSFCTKVAQVANKLIVGASnLEPaKIDCGAITMgTVSIERLQALVDDAVDKGAKVLCGGSmqtlekhlSPSSKQQKGSFYPPTILAHVPDTARIAKEEIFGPIMCIfTPFDSDDQVIQRINDCPFALSSCAFAQDPKRARDLANRLDAGMSSVNDLegTTYLSQSLPFGGLKESGFDRFAGPEGLRGLCALRSV 405
                 44899999************766655244444666777788888*******************************************988776555544444************.5689*****9.5*******************************************66669***************************************************87777689****87625689*********************999887776567899*******************************945799********************************************87455555559*******************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.96
# Mc/sec: 1153.25
//
Query:       MMETSP0890-20130614|7702_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-16   58.9   7.8    4.6e-06   26.1   0.0    6.0  7  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0022        31       9      31 ..      64      88 ..      58      93 .. 0.88
   2 ?   -0.9   0.0      0.12   1.6e+03      31      39 .]      98     106 ..      96     106 .. 0.83
   3 ?   -2.5   0.1      0.36   4.9e+03      19      34 ..     185     203 ..     180     208 .. 0.61
   4 ?   -2.4   0.0      0.34   4.7e+03      15      22 ..     228     235 ..     228     245 .. 0.84
   5 !   19.9   0.0   3.1e-08   0.00042       4      39 .]     262     298 ..     259     298 .. 0.94
   6 !   26.1   0.0   3.4e-10   4.6e-06       3      38 ..     305     341 ..     303     342 .. 0.95
   7 !    7.2   0.0   0.00031       4.3       4      21 ..     398     415 ..     396     417 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0022
                SSSSSEEEEEEESS..STEEEEEET CS
  PF00400.27  9 gHtspVtcvafspd..gpllasgSr 31
                gH + +  +  sp   g+++a+gS+
  MMETSP0890-20130614|7702_1 64 GHPGQILVMEPSPYenGNRIATGSY 88
                78899999999999**********6 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.12
                 TTSEEEEEE CS
  PF00400.27  31 rDgtirlWd 39 
                  + t++lWd
  MMETSP0890-20130614|7702_1  98 LNTTVCLWD 106
                 5679****9 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.36
                 EESS....STEEEEEETTSE CS
  PF00400.27  19 fspd....gpllasgSrDgt 34 
                 ++p      +++a+ +  ++
  MMETSP0890-20130614|7702_1 185 WCPKehenNHFVATLCT-SS 203
                 66666666777777666.44 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.34
                 EEEEEESS CS
  PF00400.27  15 tcvafspd 22 
                 t+ a+sp+
  MMETSP0890-20130614|7702_1 228 TSAAWSPH 235
                 6899**97 PP

  == domain 5    score: 19.9 bits;  conditional E-value: 3.1e-08
                 EEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27   4 katlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                 +++ + H ++V +++++p+ +  ++++ +Dg+i+ Wd
  MMETSP0890-20130614|7702_1 262 IHINQPHDGAVLDLDYNPNkPFNICTAADDGNIKFWD 298
                 577789******************************9 PP

  == domain 6    score: 26.1 bits;  conditional E-value: 3.4e-10
                 EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
  PF00400.27   3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                 ++++ r+H+++++  +++p+  +ll+s+++D+ ++lW
  MMETSP0890-20130614|7702_1 305 PLKIVRAHSNFCNKAKYNPShDQLLVSAGADNLVHLW 341
                 78999******************************** PP

  == domain 7    score: 7.2 bits;  conditional E-value: 0.00031
                 EEEEESSSSSEEEEEEES CS
  PF00400.27   4 katlrgHtspVtcvafsp 21 
                 ++t++ H ++V+ va+s 
  MMETSP0890-20130614|7702_1 398 VKTFDLHDDSVYGVAWSA 415
                 789*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       522  (0.0381802); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:00.74
# Mc/sec: 1356.86
//
Query:       MMETSP0890-20130614|7703_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   53.7   0.0    1.4e-08   34.0   0.0    2.1  2  PF06090.7 Inositol-pentakisphosphate 2-kinase
  ------ inclusion threshold ------
      0.048   12.7   1.4      0.065   12.3   0.3    1.6  2  PF14011.1 EspG family


Domain annotation for each model (and alignments):
>> PF06090.7  Inositol-pentakisphosphate 2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.2e-07   0.00085       2      76 ..       7      72 ..       6      85 .. 0.86
   2 !   34.0   0.0   2.1e-12   1.4e-08     120     307 ..      83     345 ..      70     349 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.2e-07
                ------EEEEEE----TTT---EEEEEEEESSHT-SSHHHHHHHHHHHTTGGG---TTB----EEEE-HHHHHHH CS
   PF06090.7  2 laeGnanivlaytgssdslkgkvLRlrklkkseeenestqeiydfikrvikpllgeeyvvdgelvelptefldrl 76
                ++eG+a++v++ ++        vLR++k+k++    ++  +   + ++v  ++lg+e+v   + v+lp+e  ++ 
  MMETSP0890-20130614|7703_1  7 IGEGGAHLVISTKDGY------VLRINKKKNN---RRQVLQACAYERQVAVRCLGREFVLVSQAVRLPREYGSKW 72
                69********987665......**********...999999999999*********************8876655 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 2.1e-12
                 EEEEEE---.......----TTG..GGGTS-HHHHHHHHHHHTTSSSS-----.HHHHT---HHHHHHHHHHHHHS.-BTTEEEEE---EEE-----HHHHHHHHHH--.---HHHHHHHHTT-.........................................................HHH...HHHHCS-HHHHHHHHHHHHHHHHHHH-EEEEEEEE--T....................TTTEEEEEEEEEE------TTHHHHHHH CS
   PF06090.7 120 tvlvEiKPK.......wlflspsapikarvCRfcalqalKlakgkikeeseYc.PldLfsgkkervlkaikallsegpqnnlrifkngslvysdekdefikllaevLlkkssvLqklldlQkld.........................................................eglknlkneddkslesaldvsqelslamtlrDcSlfikferdek....................sekekfsvevkiiDLDlKskeklehwlk 307
                   ++EiKPK       wl   ++a+ik++ +R ++ +a K      +   +Y  + +L s++ke+ l a+   +se++   ++   + s    +   e i ++a +L + +++L++l+++Q+                                                           ++   l+n +  + ++a ++ ++ ++a  + D+S+ ++f++                       + +++f++++++ D  +K+++kl++ ++
  MMETSP0890-20130614|7703_1  83 NSALEIKPKasdrvrsWLIAPEHAQIKSNFSRLQIVRAAK------GCLGQYAlHEKLWSKSKEEALSALIC-MSEECGHLWKWYSKDS--NTQPSAEAIAVVALALER-EPLLSRLQAIQRRYdfldvdgvtellkmwprlrkgppccgpkqsrrlehianvcraepahfeaasaeerdqRRNTALRNLRLLTKQEAAEALRRWLIALAFDDVSIIVAFRKLPCndnepprqqsedstgichipDLASTFEYSISVTDCGPKPYSKLAEKSE 345
                 5689*****6666666677799******************......77777762679*************95.6666999999888877..45556699**********.************669*****************************************************99877778889999999*************************88766789*****************99999*****************987665 PP

>> PF14011.1  EspG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.32   2.2e+03     132     161 ..      58      87 ..      44      96 .. 0.77
   2 ?   12.3   0.3   9.6e-06     0.065      29      80 ..     246     294 ..     240     311 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.32
   PF14011.1 132 rfrsvtlpaeelaealeagrsaaklasalr 161
                 + ++v+lp+e + +  +++++a +l sal+
  MMETSP0890-20130614|7703_1  58 VSQAVRLPREYGSKWAQRQKDARSLNSALE 87 
                 567888999999999998888888888875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.6e-06
   PF14011.1  29 steaeraalraralaeLeerGllsgdrvdpelaewlrvLarpdlevdlrllr 80 
                 ++++er+++r+ al+ L+   ll+ ++  ++l++wl +La+ d+++ + ++ 
  MMETSP0890-20130614|7703_1 246 ASAEERDQRRNTALRNLR---LLTKQEAAEALRRWLIALAFDDVSIIVAFRK 294
                 468999999999999999...*************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.72
# Mc/sec: 1231.46
//
Query:       MMETSP0890-20130614|7705_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-20   71.0   0.0    1.6e-19   69.4   0.0    1.9  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    2.3e-10   40.1   0.0    8.4e-10   38.2   0.0    2.0  2  PF13410.1  Glutathione S-transferase, C-terminal domain
    4.5e-07   29.6   0.0    9.6e-07   28.5   0.0    1.6  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    7.2e-06   26.0   0.1        0.2   11.8   0.0    2.6  2  PF13417.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   4.8e-23   1.6e-19       1      68 [.      49     159 ..      49     161 .. 0.71

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 4.8e-23
                 --HHHHHHHHHHHH----EEEEE.........EH....TTSHHHHH.........................................HHH------SEEE.----..EEESHHHHHHHHH CS
   PF13409.1   1 acPwahRvlialalkgledeisv.........vplepkgfekseel.........................................lalsprgtVPvLwdkdgt..vineSseIlryln 68 
                 acPwahR+li++alkgled+isv         +         +e +                                             p++tVP+L+d++++  v+neS +I+++ln
  MMETSP0890-20130614|7705_1  49 ACPWAHRTLIVRALKGLEDVISVtytgphlkhL---------KESFdptqsylykgwnfdseicvephgfeyldelyeyaepgyresCPQRPSFTVPILFDDKTQtiVNNESGDIIEMLN 159
                 7**********************4444443330.........3333444444555555566667777776666666777776666653336777********88889************9 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   3.9e+03       7      22 ..      54      69 ..      37      91 .. 0.83
   2 !   38.2   0.0   2.5e-13   8.4e-10       3      55 ..     208     262 ..     206     279 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.1
                -GGGTT-THGGG---- CS
   PF13410.1  7 araqlraaLdaleahL 22
                +r+ +++aL+ le+ +
  MMETSP0890-20130614|7705_1 54 HRTLIVRALKGLEDVI 69
                5677888888888765 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 2.5e-13
                 HHS--GGGTT-THGGG------SS.-------HHHHHHHHHHHHHHHHH---..- CS
   PF13410.1   3 aleraraqlraaLdaleahLadgpfllGdrpslaDialapflvrldaagpgl..d 55 
                 a+e a ++  +a+d++e++L  +pfl+G +++laDi+l+++l r d +++ +  +
  MMETSP0890-20130614|7705_1 208 AYEFAYNEHWKAMDKIENLLSEHPFLCGKQITLADIRLFVTLIRYDPVYYSHfkT 262
                 5666666667899***********************************9977452 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.8e-10   9.6e-07      18      95 .]     197     284 ..     181     284 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.8e-10
                 .....HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHH.......HHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
  PF00043.20  18 a....aekdeaeveeakrkvlevlealeeelsgkkylvGdkltlADialfpale.......wlqrldgnfleeefPklkawlkriaarp 95 
                 +      + +a++e a  +  ++++ +e+ ls+  +l+G ++tlADi lf  l         ++ +  n l  e P+l ++++ i  +p
  MMETSP0890-20130614|7705_1 197 VyrcgFAQTQAAYEFAYNEHWKAMDKIENLLSEHPFLCGKQITLADIRLFVTLIrydpvyySHFKTSRNKL-IEMPNLLRFTQAIYHLP 284
                 455554555668888999999**************************777766657766556666666666.**********9998766 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   7.9e-05      0.27       2      28 ..      45      71 ..      44      90 .. 0.78
   2 !   11.8   0.0   5.8e-05       0.2      40      71 ..     128     162 ..     114     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.9e-05
                E--TTSHHHHHHHHHHHH----EEE-- CS
   PF13417.1  2 ygspfSpyarkvrlaLeekglpyelve 28
                y s ++p+a++ +++  +kgl+  +  
  MMETSP0890-20130614|7705_1 45 YVSKACPWAHRTLIVRALKGLEDVISV 71
                8899****************9755543 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 5.8e-05
                 HH-TT--SSEEE----...EEESHHHHHHHHHHH- CS
   PF13417.1  40 alnpkgkvPvLeddge...vltdSlvIieyLeerf 71 
                  ++p  +vP+L dd +   v  +S +Iie L++ f
  MMETSP0890-20130614|7705_1 128 PQRPSFTVPILFDDKTqtiVNNESGDIIEMLNADF 162
                 567999******9955567778*********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 1132.19
//
Query:       MMETSP0890-20130614|7709_1  [L=944]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-34  116.8   0.4    1.3e-19   70.5   0.2    2.4  2  PF00106.20 short chain dehydrogenase
    2.2e-09   37.1   0.2     0.0019   17.8   0.0    2.3  2  PF08659.5  KR domain
    3.9e-06   26.7   0.0      0.062   12.9   0.0    2.8  3  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    0.00057   19.8   0.1     0.0017   18.2   0.0    1.9  2  PF13460.1  NADH(P)-binding
     0.0017   17.7   0.1       0.31   10.2   0.0    2.8  2  PF01370.16 NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.052   12.3   0.0        0.1   11.3   0.0    1.4  1  PF04321.12 RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.7e-15     2e-11       4     142 ..     234     367 ..     231     371 .. 0.86
   2 !   70.5   0.2   5.8e-23   1.3e-19       2     165 ..     642     816 ..     641     817 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 8.7e-15
                 EE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE.--TTSHHHHHHHHHHHHHH----SEEEEE---TT..-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHHHSS CS
  PF00106.20   4 liTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvva.cDvadrdalaallaeirkalgpldgvvhnagvld..dgpleeltperlervlapkvtgawllheltldadlgafvlfSSvagvlgs 142
                  iTG+ +glG +l r+L++  a++++l+  +  a++ + ++++++    +vt    +D++d  +++++ +e+r ++g  d++v nag  +    ++ e t+++le  + +   g +ll +l++    +++v++ S a  +g 
  MMETSP0890-20130614|7709_1 234 AITGANSGLGFELTRRLASLDAEVVMLCR-S--AARCQSAAESMN--YPKVTMGPlLDISDLRSVEHAGKELRRKYGSFDALVLNAGFYPnpGDSIGERTAQDLEIAWGAMHVGHVLLETLIPS---KRIVVVGSEAHHFGR 367
                 59******************777766666.5..577777767677..5667777778*******************************886667888889***************999999998...69*****99998886 PP

  == domain 2    score: 70.5 bits;  conditional E-value: 5.8e-23
                 EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH--.-EEEEEE--TTSHHHHHHHHHHHH......HH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHH CS
  PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealg.aevtvvacDvadrdalaallaeir......kalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrrae 165
                 +v+iTG+ +g+G  l+  L + g  + + +  + +++ ++ + +el  +g a  ++v +Dv++++ + + + +++       ++++l +vv+nag    g  e l++e+l++ ++++  g+  +++++l+    ++++++ +++S+ag  ++  ++aYaa+k+a+ ala+s r e
  MMETSP0890-20130614|7709_1 642 AVVITGCDSGFGYWLSLALSRLGFTVFAGLLSEHNSEWHTTIGDELIGDGaALPHFVHLDVTKQQHVNECVLQVKnwiaqnPEERRLLAVVNNAGRGGAGHAELLSDEALKADMEVNYVGVHRVCRAFLPllrkSPGSRILIVASMAGKCPGFAMSAYAASKHAVVALAASFRFE 816
                 599*******************7777666655569***************8999***********88877766553333334899**********************************************98777**********************************99865 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.1e-07    0.0019       5     136 ..     235     360 ..     232     371 .. 0.76
   2 !   16.9   0.1   1.5e-06    0.0033       3     164 ..     643     814 ..     642     825 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.1e-07
                 E----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEE.EE--TTSHHHHHHHH----TTS.---EEEE--------..-TTT--HHHHHHHHHHHHHHHHHHHHHHCC----EEEEEEE CS
   PF08659.5   5 vtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtv.vaaDvadrdavealleeveaeepplrGvvhaAgvlrda..llaemtaedlaavlapKvtGawnLhelladepldffvlfSS 136
                 +tG+  glG el+r+La+   +++v+l rs a++ +++   ++++    +vt+   +D++d  +ve++ +e+++++++ ++ v  Ag   +    + e+ta+dl+ +  +   G   L++l++++    +v++ S
  MMETSP0890-20130614|7709_1 235 ITGANSGLGFELTRRLASLD-AEVVMLCRS-AARCQSA--AESMNYP--KVTMgPLLDISDLRSVEHAGKELRRKYGSFDALVLNAGFYPNPgdSIGERTAQDLEIAWGAMHVGHVLLETLIPSK---RIVVVGS 360
                 9****************655.556666677.2333333..3444443..44441558******************************99853349***********************9999764...4455555 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.5e-06
                 EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----E.EEEE--TTSHHHHHHHH----T......TS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC....----EEEEEEEGGGT-------------HHHHHH----- CS
   PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaev.tvvaaDvadrdavealleevea......eepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad....epldffvlfSSiagvlgsagqanyaaanaflDalaehrr 164
                 +++tG   g+G  l+  L + g +  + l  + +++e ++   +el   ga   ++v++Dv+++++v++++ +v++      ee++l +vv+ Ag    +  + +++e+l+a ++    G++ + +++      +p   +++++S+ag +  +  ++yaa+++ + ala+  r
  MMETSP0890-20130614|7709_1 643 VVITGCDSGFGYWLSLALSRLGFTVFAGLLSE-HNSEWHTTIGDELIGDGAALpHFVHLDVTKQQHVNECVLQVKNwiaqnpEERRLLAVVNNAGRGGAGHAELLSDEALKADMEVNYVGVHRVCRAFLPllrkSPGSRILIVASMAGKCPGFAMSAYAASKHAVVALAASFR 814
                 789****************9998777765555.6889999899******99875899************99888743322224489************************************999988777766999***************************999998766 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00018      0.41       5     102 ..     239     333 ..     237     356 .. 0.78
   2 ?   -1.8   0.0      0.86     2e+03     158     204 ..     410     455 ..     391     459 .. 0.77
   3 !   12.9   0.0   2.7e-05     0.062       6     139 ..     650     788 ..     647     851 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00018
                 ------HHHHHHHH---EEEE---HH-------------------..---TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------H CS
   PF13561.1   5 dnsigwaiakalaeaGaevilttwvpaklkkkvqelakelpadvv..plDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgll 102
                 ++++g++ ++ la   aev++  ++ a+ + + +e + ++p+  +   lD+++  +v+   ++++ +  g++D lv  +++ p+   + ++ e ++++l+
  MMETSP0890-20130614|7709_1 239 NSGLGFELTRRLASLDAEVVMLCRSAARCQ-SAAE-SMNYPKVTMgpLLDISDLRSVEHAGKELRRKY-GSFDALVLNAGFYPN--PGDSIGERTAQDLE 333
                 489**********************99842.2333.3335555434489******************6.************999..55555566666555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.86
                 HHHHHHHHH----S---EEEEEE-------.----------------- CS
   PF13561.1 158 sltRvlAvelgrkkgiRvntisaGplktra.akaiggiekmieyseen 204
                   ++ lA ++g+     v ++  G ++t+   k+i+ i +++++++++
  MMETSP0890-20130614|7709_1 410 MHAQALAAKYGN--SRTVVAVTPGFVRTQIiPKNIPMIAQFYKIWMRS 455
                 567889999998..55688999*****998679999999999999876 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 2.7e-05
                 -----HHHHHHHH---EEEE---HH------------------.........----TT-SGGHHHHHHHHHHH.-.....--BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE--- CS
   PF13561.1   6 nsigwaiakalaeaGaevilttwvpaklkkkvqelakelpadv.........vplDvtseedvselaekvkedlg.....gkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylas 139
                 +++g+    al + G +v  + +++ ++ +  +++ +el   +         v lDvt++++v+e++ +vk+ +           l+  + n+ +   + +   +s + l+a ++++++ ++++++a+lp  l ++ gS +++  + +
  MMETSP0890-20130614|7709_1 650 SGFGYWLSLALSRLGFTVFAGLLSEHNS-EWHTTIGDEL---IgdgaalphfVHLDVTKQQHVNECVLQVKNWIAqnpeeR---RLLAVVNNAGR-GGAGHAELLSDEALKADMEVNYVGVHRVCRAFLP-LLRKSPGSRILIVASMA 788
                 5666666666666666666666666542.2222333332...12222334449*****************99876653322...34444444444.3334444569999*********************.45555566655443333 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.3   9.9e+03     164     180 ..      53      69 ..      35      69 .. 0.72
   2 !   18.2   0.0   7.4e-07    0.0017       2      98 ..     234     360 ..     233     420 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 4.3
   PF13460.1 164 gesaisraDvAaalvde 180
                 ++ ++ +a vA+a+++e
  MMETSP0890-20130614|7709_1  53 ASTSVIVAEVARAMLEE 69 
                 45778899999999986 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 7.4e-07
   PF13460.1   2 aviGAtGktGrrivkellarghevtalvRnpsklpe.ssgvtivk......kDlfdledlaeala.......gvdvvvdafgarpe..........d....regvkhlldalkaa..gvrrlvvvsa 98 
                 a++GA++  G +++++l++ + ev+ l R++ + ++ ++++++ k      +D++dl ++++a +       ++d++v+++g  p+          +    ++g+ h+  +l ++    +r+vvv++
  MMETSP0890-20130614|7709_1 234 AITGANSGLGFELTRRLASLDAEVVMLCRSAARCQSaAESMNYPKvtmgplLDISDLRSVEHAGKelrrkygSFDALVLNAGFYPNpgdsigertaQdleiAWGAMHVGHVLLETliPSKRIVVVGS 360
                 8*******************************98888455544431122236888885555554422244446999999996555555455554441577888999999999986346889999987 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00014      0.31       3     165 ..     235     426 ..     233     448 .. 0.73
   2 !    4.2   0.0    0.0095        22      45     169 ..     696     829 ..     643     842 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
                 EE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH........TBEEEB--TT-HHHHHHHHHHH.....T.SEEEE--S---.HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT...EEEEEEE.GGG---BSSSCB-TTS--...--SSH.............HHHHHHHHHHHHHHHHHHHT-EEEEE CS
  PF01370.16   3 VtGatGfiGsalveallekgyevvnlirrtrseslatvri........rvelveldltdkdalerlfaee.....qpdaVihlAaesg.vdass.edpadfieanvegtlnlleaarkagv..krflfasS.sevygkdaeqpikEetpl...gplsp.............YaaaKlageklveayaeeyglnaiil 165
                 +tGa+  +G  l+++l++ + evv l+r+  + ++a+++               ld++d +++e++ +e      ++da ++ A++    + s+ e+ a+ +e+ + g+  + +++ +  +  kr++ ++S ++ +g+ ++  ++E+        +++             Y +aK+a    ++a+a++yg + +++
  MMETSP0890-20130614|7709_1 235 ITGANSGLGFELTRRLASLDAEVVMLCRSAARCQSAAESMnypkvtmgP----LLDISDLRSVEHAGKELrrkygSFDALVLNAGFYPnPGDSIgERTAQDLEI-AWGAMHVGHVLLETLIpsKRIVVVGSeAHHFGRFEDFVLSENIHSlqqDNCTKhntstrlpgfncaYLRAKRANIMHAQALAAKYGNSRTVV 426
                 9*********************998888888887777777566433331....489999999999988888889999**9999999774444443333333333.3344444444444444569***************77665554444333222224445577788888*******************8877766 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0095
                 EEEB--TT-HHHHHHHHHHH...........T.SEEEE--S---.HHHCCCSHHHH...HHHHT---HHHHHHHH....HHTT.EEEEEEEGGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESE CS
  PF01370.16  45 elveldltdkdalerlfaee...........qpdaVihlAaesg.vdassedpadf...ieanvegtlnlleaar....kagvkrflfasSsevygkdaeqpikEetplgplspYaaaKlageklveayaeey.glnaiilrlfn 169
                 ++v+ld+t+++ +++ + ++           +  aV++ A++ g  +a + +++++   +e n++g+ ++++a      k    r+l + S    gk+         p    s+Yaa+K+a+  l+ +++ e+  +++++l ++ 
  MMETSP0890-20130614|7709_1 696 HFVHLDVTKQQHVNECVLQVknwiaqnpeerRLLAVVNNAGRGGaGHAELLSDEALkadMEVNYVGVHRVCRAFLpllrKSPGSRILIVASM--AGKC---------PGFAMSAYAASKHAVVALAASFRFEQvHVPVCVLCPSF 829
                 55555555555555555444444444222223333666666666555555322222222556666666666665533322222444444442..2333.........33357889999999999999999776588888887765 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.5e-05       0.1       2      53 ..     232     303 ..     231     334 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.5e-05
                 EEEEE--------HHHHHH----EEEEE--TT....................T--TT-HHHHHHHHHHH--S CS
  PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre....................eldltdpeavaalvkeakpd 53 
                 r+++tGan  lG eL+r+l++ ++evv l r+                     ld++d  +v+++ ke + +
  MMETSP0890-20130614|7709_1 232 RFAITGANSGLGFELTRRLASLDAEVVMLCRSaarcqsaaesmnypkvtmgpLLDISDLRSVEHAGKELRRK 303
                 689*************************98887899999999999999999889999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.35u 0.42s 00:00:01.77 Elapsed: 00:00:01.14
# Mc/sec: 1967.10
//
Query:       MMETSP0890-20130614|7708_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   17.9   0.0      0.001   17.5   0.0    1.1  1  PF07779.7 10 TM Acyl Transferase domain found in Cas1p


Domain annotation for each model (and alignments):
>> PF07779.7  10 TM Acyl Transferase domain found in Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.6e-08     0.001     438     494 ..      11      71 ..       6      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.6e-08
   PF07779.7 438 kgvLvlipg....tpvlnlvittiifvcvshevaeltneltklivpkdkklvlrnlvlplf 494
                 k++++l+pg    t +ln+  ++ +++++s++v +lt +l + +vp++++ + r+ ++++ 
  MMETSP0890-20130614|7708_1  11 KSLMILLPGgddaTYWLNFAFVSALYIFLSYRVFQLTVDLKDTLVPTETNILYRRSAIAFL 71 
                 66777777633225677**********************************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 471.66
//
Query:       MMETSP0890-20130614|7710_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 154.84
//
Query:       MMETSP0890-20130614|7711_1  [L=1200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.8   0.0      0.005   16.8   0.0    2.0  2  PF09333.6 ATG C terminal domain


Domain annotation for each model (and alignments):
>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.27   3.7e+03      68      90 ..    1065    1087 ..    1063    1098 .. 0.74
   2 !   16.8   0.0   3.6e-07     0.005      52      90 ..    1153    1191 ..    1125    1195 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.27
   PF09333.6   68 igateavsktlgGvrnqldpdar 90  
                  + a++a  k+  G+ n ld   +
  MMETSP0890-20130614|7711_1 1065 VEAARASRKLASGIANVLDHASE 1087
                  568899999999****9997654 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 3.6e-07
   PF09333.6   52 vgavlkaiPiavvrPligateavsktlgGvrnqldpdar 90  
                  ++++  a P+++++Pl+gat+ ++ +l+G++ ++d d +
  MMETSP0890-20130614|7711_1 1153 AANIGAALPVVLLQPLVGATRGLAFVLLGLEQAMDHDDH 1191
                  5678899***************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.51u 0.40s 00:00:01.91 Elapsed: 00:00:02.24
# Mc/sec: 1283.76
//
Query:       MMETSP0890-20130614|7713_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   34.2   0.4    2.9e-08   32.7   0.3    1.9  1  PF09851.4 Short C-terminal domain


Domain annotation for each model (and alignments):
>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.3   2.1e-12   2.9e-08       2      31 .]       6      35 ..       5      35 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.1e-12
   PF09851.4  2 adaLekLkeLyarGeIteEEFeakKkkLLg 31
                ++aL+  k L+++G++t EEF  kK++LL+
  MMETSP0890-20130614|7713_1  6 VQALRDAKSLLDEGILTAEEFASKKAELLN 35
                689*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.79
# Mc/sec: 931.24
//
Query:       MMETSP0890-20130614|7717_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00057   18.1   0.0    0.00063   18.0   0.0    1.1  1  PF02480.11 Alphaherpesvirus glycoprotein E
     0.0012   18.0   1.1     0.0018   17.4   0.7    1.3  1  PF05399.6  Ectropic viral integration site 2A protein (EVI2A)
     0.0057   16.4   0.8     0.0067   16.2   0.5    1.3  1  PF06679.7  Protein of unknown function (DUF1180)
     0.0077   16.1   0.0      0.012   15.5   0.0    1.4  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
     0.0094   15.0   0.2      0.011   14.8   0.2    1.0  1  PF05795.6  Plasmodium vivax Vir protein
       0.01   15.9   0.4       0.01   15.9   0.3    1.9  2  PF13908.1  Wnt and FGF inhibitory regulator
  ------ inclusion threshold ------
      0.013   14.2   0.1      0.015   13.9   0.1    1.3  1  PF06809.6  Neural proliferation differentiation control-1 protein (NPDC1)
      0.023   15.3   0.4       0.21   12.2   0.0    2.1  2  PF07790.6  Protein of unknown function (DUF1628)
      0.055   12.5   0.0       0.07   12.2   0.0    1.1  1  PF09451.5  Autophagy-related protein 27
      0.066   12.4   0.6      0.073   12.2   0.4    1.1  1  PF11359.3  Glycoprotein UL132
       0.32   10.7   3.2       0.23   11.1   0.6    1.8  2  PF05814.6  Baculovirus protein of unknown function (DUF843)
       0.33   10.6   7.5       0.45   10.1   5.2    1.3  1  PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
       0.88    9.5   5.5        1.2    9.0   3.8    1.2  1  PF14340.1  Domain of unknown function (DUF4395)


Domain annotation for each model (and alignments):
>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     6e-07   0.00063     312     385 ..      22      96 ..      10     118 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6e-07
  PF02480.11 312 veevtrPragaaadseesdppatpapsaepakpeartapyllllaavlgaavlllvvlllvlvcvtk.rrrrkay 385
                 ++ ++ P+ +   +s++ ++ +t+ +s+++++++++++  ll+l++++++++++l+  +++++c +   +r +++
  MMETSP0890-20130614|7717_1  22 IVSTSSPTPKPTTNSDTGTSDQTDSSSSSGKNKSNNDNGNLLFLIVLFVVFAIILISTVSFCLCCFFfGMRNSER 96 
                 445555665556778888888888889999999999999999999999998888888777766655404444443 PP

>> PF05399.6  Ectropic viral integration site 2A protein (EVI2A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   1.8e-06    0.0018      75     148 ..       9      82 ..       2      89 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.8e-06
   PF05399.6  75 etstpvpl..astseself.tpsavrnspdtaeientskskgetlkkevceentsklailicliiiaalvlictflf 148
                 +t+tp+p   a+t  s ++ tp+     +dt+  ++t  s      k+  ++++ +l++li l ++ a++li t  f
  MMETSP0890-20130614|7717_1   9 ATATPQPTpeATTIVSTSSpTPKPTT-NSDTGTSDQTDSSS--SSGKNKSNNDNGNLLFLIVLFVVFAIILISTVSF 82 
                 45555543114444444431444444.45777766666665..344555566669*****************99877 PP

>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.5   6.4e-06    0.0067      39     110 ..       3      77 ..       1     111 [. 0.56

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.4e-06
   PF06679.7  39 sePeprtlsalpPgptpanptalleadakkGkasetssggalavspsplsrdkpllk....ralvVlvvvsaaviv 110
                 ++P p  ++++ P+p +++ +++++ + k   +s+t + ++   s s+  ++k          l+Vl vv a++++
  MMETSP0890-20130614|7717_1   3 PTPAPVATATPQPTPEATTIVSTSSPTPKPTTNSDTGTSDQTDSSSSSG-KNKSNNDngnlLFLIVLFVVFAIILI 77 
                 3444444444444444444455555555555666666665554444444.23322220001345666666666655 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05     0.012      37      89 ..      37      93 ..      21     113 .. 0.51

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-05
   PF06024.7 37 kntksaapknditeeeskaekaqatnillisllavlcvlvll....yviyYFvilre 89
                ++ +s + ++++++ ++k+++ +    +li+l +v++++++      +  +F+ +r+
  MMETSP0890-20130614|7717_1 37 DTGTSDQTDSSSSSGKNKSNNDNGNLLFLIVLFVVFAIILIStvsfCLCCFFFGMRN 93
                122222222233333333334455555666666666666653333234445555555 PP

>> PF05795.6  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2     1e-05     0.011     234     312 ..      18     109 ..       2     123 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1e-05
   PF05795.6 234 ekaeletsskteaarsesgtkndaspessasspsslestssektsdpfrniv.aaavlglgifliffilyk..............lgsslrkkr 312
                 e +   ++s++  +++  + ++++++++++ss+ss +++s++++++ +  iv  ++++++ i+  +f l+               l ++ ++k+
  MMETSP0890-20130614|7717_1  18 EATTIVSTSSPTPKPT--TNSDTGTSDQTDSSSSSGKNKSNNDNGNLLFLIVlFVVFAIILISTVSFCLCCfffgmrnserpspsLVRMTNSKN 109
                 3333333344444333..3466677777778888888888888889999999899999999999999988896666644433222222222222 PP

>> PF13908.1  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.8      0.19     2e+02     121     150 ..      19      48 ..       1      62 [. 0.47
   2 !   15.9   0.3   9.5e-06      0.01      64     128 ..      47     113 ..      31     123 .. 0.44

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.19
   PF13908.1 121 sttvqatplpqeeskapsypqpqsqgyetp 150
                 +tt+ +t+ p ++ + +s+ + + q+ +++
  MMETSP0890-20130614|7717_1  19 ATTIVSTSSPTPKPTTNSDTGTSDQTDSSS 48 
                 333344444444444444444444444433 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 9.5e-06
   PF13908.1  64 kfrkpvedptkdlkvvlivsiilivvfivvliviftcskcvleka..vrrqrpvvtsassttvqatp 128
                    + +++  +d +  l   ++++v++i+ +  +  c +c+   +   +r+ p+ ++ + +   ++p
  MMETSP0890-20130614|7717_1  47 SSSSGKNKSNNDNGNLLFLIVLFVVFAIILISTVSFCLCCFFFGMrnSERPSPSLVRMTNSKNSSNP 113
                 2233333333333333333344444455544444445555554440055555666666655544444 PP

>> PF06809.6  Neural proliferation differentiation control-1 protein (NPDC1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.4e-05     0.015     163     229 ..      23      92 ..       8     116 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
   PF06809.6 163 hgtsspiphtslss.rvssdpvqmspl..eprgrqgdglalvlilafclasaaalavaalcwcrlqreir 229
                   tssp+p+ + +s   +sd  + s    + + ++ +g  l li+ f++ +   ++  ++c c +   +r
  MMETSP0890-20130614|7717_1  23 VSTSSPTPKPTTNSdTGTSDQTDSSSSsgKNKSNNDNGNLLFLIVLFVVFAIILISTVSFCLCCFFFGMR 92 
                 4678888875544414567766655441166778899**************************8765555 PP

>> PF07790.6  Protein of unknown function (DUF1628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.48   5.1e+02      26      51 ..      21      45 ..       9      64 .. 0.59
   2 ?   12.2   0.0    0.0002      0.21      10      61 ..      67     119 ..      65     124 .] 0.74

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.48
   PF07790.6 26 fvfglaskeekaPqasldvkidssad 51
                +++++ s+++ +P ++ d+ +++++d
  MMETSP0890-20130614|7717_1 21 TIVST-SSPTPKPTTNSDTGTSDQTD 45
                55555.55555555555444222222 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.0002
   PF07790.6  10 iLmvaitvIlaAviaa....fvfglaskeekaPqasldvkidssadtgkevkiehk 61 
                 +L v+  +Il+++++     f fg+   +++ P+ sl v++++s+++++ v ie++
  MMETSP0890-20130614|7717_1  67 VLFVVFAIILISTVSFclccFFFGM--RNSERPSPSL-VRMTNSKNSSNPVDIEEN 119
                 89************96222256666..7788888888.777777777665888876 PP

>> PF09451.5  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.6e-05      0.07     167     224 ..      28      82 ..      10      85 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.6e-05
   PF09451.5 167 ktkaaClkskkdkkkdgsgddkkdgdkkgdksgswgfftWLfillvLfvaiYlivgsw 224
                  t++    ++ d + +++ d++++++k+ +++   g +  L++l+v+f++i +  +s+
  MMETSP0890-20130614|7717_1  28 PTPKPT--TNSDTGTSDQTDSSSSSGKNKSNN-DNGNLLFLIVLFVVFAIILISTVSF 82 
                 444444..455566655555555555555444.4555888999999999888877776 PP

>> PF11359.3  Glycoprotein UL132
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   6.9e-05     0.073       7      76 ..      20      89 ..       9     119 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.9e-05
   PF11359.3  7 vpasttasstvtsatssetsvstnvttaleastqkepn.dvvekvlaivvyivsgvsilsllvvlvavlys 76
                ++  +t+s t + +t s+t +s + t    +s +++ n d+ + ++ iv+++v +  ++s +   ++  + 
  MMETSP0890-20130614|7717_1 20 TTIVSTSSPTPKPTTNSDTGTS-DQTDSSSSSGKNKSNnDNGNLLFLIVLFVVFAIILISTVSFCLCCFFF 89
                3333444555555555555555.556666666666655055555667888888888888888777777664 PP

>> PF05814.6  Baculovirus protein of unknown function (DUF843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   0.00022      0.23      18      41 ..      53      76 ..      52      83 .. 0.83
   2 ?   -1.3   0.0       1.6   1.7e+03      42      59 ..     103     120 ..     100     123 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
   PF05814.6 18 dkneklsellltllllfvlFiill 41
                +k ++ +  ll+l++lfv+F i+l
  MMETSP0890-20130614|7717_1 53 NKSNNDNGNLLFLIVLFVVFAIIL 76
                6677777789**********9998 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.6
   PF05814.6  42 nvyyikteStpadlytek 59 
                 ++   k+ S+p d+  +k
  MMETSP0890-20130614|7717_1 103 RMTNSKNSSNPVDIEENK 120
                 556678899999998765 PP

>> PF05283.6  Multi-glycosylated core protein 24 (MGC-24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.2   0.00043      0.45     106     172 ..       6      71 ..       2      88 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00043
   PF05283.6 106 csvattasvttanstakPtvrpstttsakkvtsepktnttvtPasqeerkstFDaAsFiGGivLvLg 172
                 ++vat+++ +t ++t+  + ++s+t+ +++  +++++++t + +s+ + ks  D    +  ivL + 
  MMETSP0890-20130614|7717_1   6 APVATATPQPTPEATTIVS-TSSPTPKPTTNSDTGTSDQTDSSSSSGKNKSNNDNGNLLFLIVLFVV 71 
                 4788999999988887654.45777888888888999999999999999999999999888888654 PP

>> PF14340.1  Domain of unknown function (DUF4395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.8    0.0012       1.2     101     127 ..      65      91 ..      59      94 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0012
   PF14340.1 101 vaaalllvaafleaafgfClGCkiyll 127
                 ++++++++a +l ++++fCl C+ +++
  MMETSP0890-20130614|7717_1  65 LIVLFVVFAIILISTVSFCLCCFFFGM 91 
                 4567788888888888*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1235  (0.0903306); expected 273.4 (0.02)
Passed bias filter:                      868  (0.0634874); expected 273.4 (0.02)
Passed Vit filter:                       130  (0.00950848); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.43s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 450.22
//
Query:       MMETSP0890-20130614|7715_1  [L=1502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-17   62.6   2.6    1.8e-07   30.9   0.9    2.9  2  PF13086.1  AAA domain
    1.4e-10   40.9   3.7    0.00016   21.1   0.0    3.5  3  PF13604.1  AAA domain
    2.5e-10   39.9   0.0    9.3e-10   38.1   0.0    1.9  1  PF13087.1  AAA domain
    2.2e-08   33.6   0.1    2.2e-08   33.6   0.1    3.5  3  PF13245.1  Part of AAA domain
    0.00014   21.1   0.0     0.0017   17.6   0.0    2.6  2  PF13481.1  AAA domain
    0.00021   21.2   0.7      0.027   14.4   0.1    3.3  2  PF13401.1  AAA domain
    0.00085   18.5   0.1      0.086   11.9   0.0    2.5  2  PF02562.11 PhoH-like protein
      0.001   18.5   1.0       0.61    9.5   0.0    2.7  2  PF05127.9  Helicase
     0.0019   17.4   2.8      0.097   11.7   0.0    4.0  5  PF12846.2  AAA-like domain
     0.0072   15.8   1.5       0.65    9.4   0.0    2.7  3  PF01443.13 Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.026   13.7   0.0        3.5    6.7   0.0    2.4  2  PF00580.16 UvrD/REP helicase N-terminal domain
      0.082   12.1   0.6        0.3   10.2   0.6    1.8  2  PF06672.6  Protein of unknown function (DUF1175)
       0.09   11.6   0.0         20    3.8   0.0    3.8  4  PF09848.4  Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.6e-10   3.8e-07       4     106 ..     182     281 ..     180     411 .. 0.69
   2 !   30.9   0.9   1.7e-10   1.8e-07     158     237 ..     985    1061 ..     786    1063 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.6e-10
   PF13086.1   4 esqleaikealsssgitliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlle.....ldeegkkynpkivRigneaekihedlksvsl 106
                 ++q+e + + l+++g ++  GpPgtGK++tiv +i           a++++rvLv+++  +a   + ++l +       + g  +  ++ R+ +   +  +d+ ++sl
  MMETSP0890-20130614|7715_1 182 NEQQEQVIKTLEAKGCCVCFGPPGTGKSQTIVNVICHY--------AATGRRVLVTSKLASATEVVRKKLPHgirelCVSLGDADAASFRRLEAAVARLADDVAAASL 281
                 6799999999****************************........9****************999999877554542222333333333333333234444444443 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 1.7e-10
   PF13086.1  158 kkeleearekiekeileeaevvcaTlsgsgskllsklkekfdvvIIDEAaqavepstLiPLllgckkvvLvGDpkQLppt 237 
                  + +l+e+ +++ ++  +++ v +  l+ +++ l + ++ +f+ vI+DEA+q   +s++ +Ll+g  k+ +vGD+kQ +pt
  MMETSP0890-20130614|7715_1  985 YARLREDLASAMADCADKVPVWIMPLARVAQCLPATIS-QFELVIVDEASQL-DASAIPALLRG-AKILIVGDHKQVSPT 1061
                  44455555555566666666666666666555555664.************5.78899999999.**************9 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.6e-07   0.00016       3      66 ..     182     243 ..     180     294 .. 0.83
   2 ?   -1.7   0.2       1.6   1.6e+03      69     178 ..     829     937 ..     805     955 .. 0.59
   3 !   18.6   0.0   9.5e-07     0.001      91     136 ..    1021    1061 ..     964    1076 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.6e-07
   PF13604.1   3 saeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeeel 66 
                 +++Q+++++++   +  ++v  Gp+GtGK++++  +   ++a+g+rv++ +  + a++v++++l
  MMETSP0890-20130614|7715_1 182 NEQQEQVIKTL-EAK-GCCVCFGPPGTGKSQTIVNVICHYAATGRRVLVTSKLASATEVVRKKL 243
                 45555555555.555.477777*************************************99984 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.6
   PF13604.1  69 earTiasllerldkeeaegrkeldaktllvvDEAg.mvdtrqlarlleaaekagakvvlvGDteQlqaveaGgvfrllaeeggetaeLtevvRqkdeeeraasealregep 178
                 e + i++ll ++ +++++   +  + +l+ + E   +  + +lar+  a +k+ +   +vGD++ + + +a ++++++a++ +     + +  ++ +++++as+ +  ++ 
  MMETSP0890-20130614|7715_1 829 ENESIEKLLAKWLDARSR--IRRGRASLITLTELRrVCRNSDLARMAPAWAKSVCSAPVVGDDDAVLPRDARKAWAAVAAAQALERVFNAIEVNTASNQEDASQSMLLERR 937
                 555666666666663322..2233333555555441345677888888888888888888888877777777777777766664333333333444444455555544444 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 9.5e-07
   PF13604.1   91 ldaktllvvDEAgmvdtrqlarlleaaekagakvvlvGDteQlqav 136 
                  +++ +l++vDEA+++d+  + +ll+     gak+++vGD++Q+++ 
  MMETSP0890-20130614|7715_1 1021 ISQFELVIVDEASQLDASAIPALLR-----GAKILIVGDHKQVSPT 1061
                  67778******************96.....99**********9985 PP

>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   8.8e-13   9.3e-10       3     194 ..    1089    1280 ..    1088    1283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 8.8e-13
   PF13087.1    3 rSlferllkkakekvvlLdtqYRmhpeIsefpsklfYegkLkdaesvkkrelealealekplep.lvfidvekseeeeekkeksyiNeeEaelvvklvekllkkgeee...sekkigvitpYr.aqvellkkklkekekekeeke..ievstvDgfQGrEkdviilslVRsnekk.......kvgflkderrlNVAlTRAkrklii 194 
                  rS+f+  + +   + v L++ +R+ p+  +f++++fY ++L+  +  +  ++         l+p lv i +++ ++  +      +N++Ea++v+++++  l++ +     ++ +i+vi+    +q +l ++   e  ++++ ++  +  +     QG E+dv++ls+V s +++       +vg l   +r NVA++RA++k+++
  MMETSP0890-20130614|7715_1 1089 RSIFDLASCCFADARVGLTQHFRCVPSCIAFSNAQFYLNSLEPRRLPSGGMSA-------ALQPsLVDIRIPNGKKVGK------TNDNEARAVANYLKLQLDARNGIlakANASIAVISLLGiEQARLCRRYALEVLTDSQLAKhrVVFGDPPMLQGDERDVVLLSMVASPRESstsgppaQVGPLYT-QRYNVAMSRARHKIVL 1280
                  7888888888899999************************9987655555444.......5555477777776666555......79**********99888776665667789******99736777777776666666555554477777789****************744434445557998865.689**********987 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   2.1e-11   2.2e-08       6      75 ..     191     265 ..     186     266 .. 0.84
   2 ?   -3.5   0.3       7.7   8.1e+03      31      62 ..     722     755 ..     719     766 .. 0.56
   3 ?   -1.9   1.1       2.5   2.6e+03      35      62 ..     910     948 ..     899     995 .. 0.70

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.1e-11
   PF13245.1   6 alagnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserl.........llgvekastihrl 75 
                 +l+  +++v  G+PGtGK++t++++i++++a+    gr+vl+ +    a + +++ l         +lg ++a +++rl
  MMETSP0890-20130614|7715_1 191 TLEAKGCCVCFGPPGTGKSQTIVNVICHYAAT----GRRVLVTSKLASATEVVRKKLphgirelcvSLGDADAASFRRL 265
                 45535666668*******************99....*******999999999999999999999997777779888887 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 7.7
   PF13245.1  31 iaallaarekp.grsvllvaptg.raakrlserl 62 
                 +aal++ r+++  + + ++a +  +aa+r s++l
  MMETSP0890-20130614|7715_1 722 VAALITGRQVHeEAHIAVAAASPlEAAARGSSSL 755
                 6667766666666666666443313333444444 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 2.5
   PF13245.1  35 l..........aarekp.grsvllvaptgraakrlserl 62 
                 l          +a ++   ++ +l+   ++a++ l +++
  MMETSP0890-20130614|7715_1 910 LervfnaievnTASNQEdASQSMLLERRDAAVRALVSAV 948
                 345567777773344555788888888888888886666 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06    0.0017      21     107 ..     184     280 ..     173     327 .. 0.75
   2 ?   -0.3   0.0      0.51   5.3e+02      82     133 ..     984    1035 ..     976    1040 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.6e-06
   PF13481.1  21 pldwlvkgllprgsltllaGapgtGKStlalqlaaava.tGepflg............pvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvs 107
                 +++ ++k l  +++ ++ +G+pgtGKS  +++ ++++a tG+ +l             ++ p+  r l +s+ d+ a   rrl+a+ a+l   +++ ++s
  MMETSP0890-20130614|7715_1 184 QQEQVIKTL-EAKGCCVCFGPPGTGKSQTIVNVICHYAaTGRRVLVtsklasatevvrKKLPHGIRELCVSLGDADAASFRRLEAAVARLA--DDVAAAS 280
                 677788877.55666999*********************888777777888887777655569999*********9999*****9999983..3333333 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.51
   PF13481.1   82 seaelrrrlsailaalddpenlllvslagv.gslrltaddrrdalltadlerl 133 
                   +a+lr+ l+ ++a++ d+  + ++ la+v ++l+ t  +++  ++++  ++l
  MMETSP0890-20130614|7715_1  984 RYARLREDLASAMADCADKVPVWIMPLARVaQCLPATISQFELVIVDE-ASQL 1035
                  478899999999999999999999999999999999888777766654.3555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.6e-05     0.027       3      27 ..     194     218 ..     191     323 .. 0.81
   2 ?    3.5   0.0     0.062        65      75     108 ..     988    1044 ..     924    1059 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.6e-05
   PF13401.1   3 sagilvvtGesGvGKTtllrrlarq 27 
                  +g++v++G++G+GK+ ++ ++   
  MMETSP0890-20130614|7715_1 194 AKGCCVCFGPPGTGKSQTIVNVICH 218
                 689*************998877655 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.062
   PF13401.1   75 llealqealrrrrt.......................rlliiDEaqrLseealeelr 108 
                  l+e l+ a+++++                        +l+i+DEa +L ++a+  l 
  MMETSP0890-20130614|7715_1  988 LREDLASAMADCADkvpvwimplarvaqclpatisqfELVIVDEASQLDASAIPALL 1044
                  44444444444444445555555555556666666888**********988888873 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   8.1e-05     0.086       4      34 ..     180     210 ..     179     238 .. 0.87
   2 ?    3.8   0.0     0.025        27     122     161 ..    1026    1061 ..    1019    1080 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.1e-05
  PF02562.11   4 pktkeQkeylealkkndivfaiGpaGtGKTy 34 
                 p +++Q++++++l+++  ++++Gp GtGK+ 
  MMETSP0890-20130614|7715_1 180 PSNEQQEQVIKTLEAKGCCVCFGPPGTGKSQ 210
                 6799*************************85 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.025
  PF02562.11  122 fvilDEaqnttkeqmkmfltRlgenskvvvtGditqidlp 161 
                  +vi+DEa  +  + +  +l    +++k+ ++Gd +q+  +
  MMETSP0890-20130614|7715_1 1026 LVIVDEASQLDASAIPALL----RGAKILIVGDHKQVSPT 1061
                  79**********9999988....69***********9765 PP

>> PF05127.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00058      0.61       4      56 ..     202     253 ..     199     297 .. 0.82
   2 !    6.8   0.1     0.004       4.2      88     118 ..    1021    1051 ..     938    1059 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00058
   PF05127.9   4 AdRGRGKSaalGlalaalvaegksnilvtapskenvktlfeflekglealglk 56 
                 + +G+GKS ++  ++ + +a+g+ ++lvt+   ++++ + + l +g+++l ++
  MMETSP0890-20130614|7715_1 202 GPPGTGKSQTIVNVICHYAATGR-RVLVTSKLASATEVVRKKLPHGIRELCVS 253
                 679*****************998.9**************99999999887655 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.004
   PF05127.9   88 keqadllvvDEAAaiplpllkkllekpkrvv 118 
                   +q +l++vDEA+ ++ + + +ll++ k ++
  MMETSP0890-20130614|7715_1 1021 ISQFELVIVDEASQLDASAIPALLRGAKILI 1051
                  33559******************98877665 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.2e-05     0.097       3      41 ..     197     235 ..     195     388 .. 0.70
   2 ?   -3.6   0.0       4.2   4.4e+03     114     164 ..     537     591 ..     491     637 .. 0.56
   3 ?    1.9   0.2     0.092        96     140     217 ..     755     828 ..     674     854 .. 0.65
   4 ?    0.1   0.1      0.31   3.3e+02      63     149 ..     914     998 ..     887    1004 .. 0.44
   5 ?   -3.8   0.0         5   5.2e+03     173     238 ..    1207    1275 ..    1185    1277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.2e-05
   PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvviiDpggey 41 
                  ++++GppG GKS ++ +++++++a g+rv++  +  ++
  MMETSP0890-20130614|7715_1 197 CCVCFGPPGTGKSQTIVNVICHYAATGRRVLVTSKLASA 235
                 5799**************************996555555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.2
   PF12846.2 114 alsralrelyeeegiatlaqrqayPt.lgdllea.lreeeeelaeealarde.....r 164
                 +l+++ r+ly +  i +la r    + l+dll   ++++    a++a ++++      
  MMETSP0890-20130614|7715_1 537 VLRAVKRALYFADKILELAPRGLQSVqLPDLLLRvVSRAA---AAKAQHEEGsadpiI 591
                 2333333333333333455555555667775555355555...333333333322331 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.092
   PF12846.2 140 lgdllealreeeeelaeealarderreaaeelalalerlldgalgelFdgpttfdldldariivfdlsglkgpgteee 217
                 l + +  lre+   ++ + l++   ++   +l+++le+l+  + +   +++ +f l  +a ++ + +s+ +  +++e 
  MMETSP0890-20130614|7715_1 755 LAEDTTRLREALSVHQDNRLDD--ALKLRSSLLNELEPLCAAENA--MNKQQPFALLREATLTLLAISNASNEQSTEK 828
                 3333333333332222222222..357888999999999996666..59999***************99997666644 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.31
   PF12846.2  63 lNPfdigpteagaekleaea.dphsreldlllalle.tdselrnrpledeeeaalsralrelyeeegiatlaqrqayPt.lgdllealre 149
                 +N  ++ ++++++  +   +   ++r+ + ++al++  + +   +++++ + aal r+++++ ++++ +   ++q+y +  +dl+ a ++
  MMETSP0890-20130614|7715_1 914 FNAIEVNTASNQEDAS---QsMLLERRDAAVRALVSaVAKAALRQRMSPKTCAALVRLVSAVSAAAAVS--SDSQRYARlREDLASAMAD 998
                 4444444422222222...22333333333444444433333334444444455555555555555544..4455555434444444443 PP

  == domain 5    score: -3.8 bits;  conditional E-value: 5
   PF12846.2  173 l.alerlldgalge...lFdgpttfdldldariivfdlsglkgpgteeedkalaaavllaiwaaarrnfr 238 
                  + ale l+d+ l+    +F +p  +  d++ +++ + + + +  +++++ +a++  +++  +++a++ +r
  MMETSP0890-20130614|7715_1 1207 RyALEVLTDSQLAKhrvVFGDPPMLQGDER-DVVLLSMVASPRESSTSGPPAQVGPLYTQRYNVAMSRAR 1275
                  347888888888888888888887777777.888888888887777788888888888888888877665 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.018        19       4      22 ..     201     227 ..     198     253 .. 0.69
   2 !    9.4   0.0   0.00062      0.65      47      98 ..    1013    1060 ..    1004    1084 .. 0.77
   3 ?   -3.8   0.0       6.8   7.1e+03     213     224 ..    1269    1280 ..    1265    1281 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.018
  PF01443.13   4 hGvpGcGKStlirkllrt........l 22 
                  G pG GKS+ i++++++        l
  MMETSP0890-20130614|7715_1 201 FGPPGTGKSQTIVNVICHyaatgrrvL 227
                 688*************99865544331 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00062
  PF01443.13   47 vdsflmalvkskgkililDEylllhaGyilllaalssaklvilfGDplQipf 98  
                  v ++l+a +  +++++i+DE+ +l+a  i +   l +   ++++GD++Q + 
  MMETSP0890-20130614|7715_1 1013 VAQCLPATIS-QFELVIVDEASQLDASAIPA---LLRGAKILIVGDHKQVSP 1060
                  5566677665.5*************866666...55555679*******754 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 6.8
  PF01443.13  213 vAlTRhrkslvi 224 
                  vA++R+r ++v+
  MMETSP0890-20130614|7715_1 1269 VAMSRARHKIVL 1280
                  9*******9986 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0034       3.5       2      59 ..     182     237 ..     181     288 .. 0.74
   2 ?    4.6   0.0     0.014        15     239     294 ..    1006    1057 ..     753    1058 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0034
                 SHHHHHHHHS..-SS-EEEE-------HHHHHHHHHHHHHTT---GGGEEEEESSHHHHH CS
  PF00580.16   2 npeqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAae 59 
                 n++q++ i++   +g ++    +G+GK+++++++i +  +++    +r+lv      A+e
  MMETSP0890-20130614|7715_1 182 NEQQEQVIKTleAKGCCVCFGPPGTGKSQTIVNVICHYAATG----RRVLVTSKLASATE 237
                 78899999887444555556778*************998888....56666555555555 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.014
                  HHHHHHHSHHHHHHHHHHSSEEEESSGGG--HHHHHHHHHHHTTTTTEEEE--GGG CS
  PF00580.16  239 llelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294 
                   +  l +  + + a  ++++ + +DE+ +++ +    +  l +g  ++++vGD kQ
  MMETSP0890-20130614|7715_1 1006 WIMPLARVAQCLPATISQFELVIVDEASQLDAS---AIPALLRGA-KILIVGDHKQ 1057
                  44455556667777789*********9777655...566677776.7********* PP

>> PF06672.6  Protein of unknown function (DUF1175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   0.00028       0.3       8      71 ..     921     979 ..     913    1004 .. 0.70
   2 ?   -3.4   0.0       4.2   4.4e+03     111     140 ..    1059    1088 ..    1043    1092 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00028
   PF06672.6   8 esdstadeeelakldeedseafrawfvriaeeqlrke.sarweeeqrDCagLvrfa.arealkkhd 71 
                 ++++ +++++ ++l e +++a+ra++ ++a+++lr+  s++       Ca+Lvr   a +a  +++
  MMETSP0890-20130614|7715_1 921 TASN-QEDASQSMLLERRDAAVRALVSAVAKAALRQRmSPK------TCAALVRLVsAVSAAAAVS 979
                 3333.3444458999999*****************875555......5******741334444444 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.2
   PF06672.6  111 gkfsafadAetLlqensrfvsrdveqarpG 140 
                    ++af+  + ++q ++r+    +eq++pG
  MMETSP0890-20130614|7715_1 1059 SPTAAFVAEKDMIQLSTRLSHPYKEQLLPG 1088
                  44899************9998888888888 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.019        20       3      52 ..     197     244 ..     195     296 .. 0.79
   2 ?   -0.6   0.0      0.43   4.5e+02     215     238 ..     681     704 ..     673     714 .. 0.73
   3 ?    0.6   0.0      0.19     2e+02      63      97 ..    1006    1037 ..     960    1119 .. 0.64
   4 ?    0.4   0.0      0.21   2.3e+02     331     349 ..    1263    1281 ..    1245    1283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.019
   PF09848.4   3 vilvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlreala 52 
                 +++  G +GtGK+   +n++ ++   + +r+  + s+  +  +v+r++l 
  MMETSP0890-20130614|7715_1 197 CCVCFGPPGTGKSQTIVNVICHY--AATGRRVLVTSKLASATEVVRKKLP 244
                 67888**************9999..7888888888888888888887775 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.43
   PF09848.4 215 kesgrsrlvatydwerleekkkkk 238
                 +  + +rlv+++dwe +e+ ++++
  MMETSP0890-20130614|7715_1 681 HVLDVCRLVSGSDWEATESAREDD 704
                 555679***********6655554 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.19
   PF09848.4   63 avkkpssfinnlskaekkkpkedvvivDEAhrllt 97  
                   ++ ++ + + l    ++ +++++vivDEA  l  
  MMETSP0890-20130614|7715_1 1006 WIMPLARVAQCLP---ATISQFELVIVDEASQLDA 1037
                  4444455555555...888999********88765 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.21
   PF09848.4  331 lkNeyrVLLtRGvkGlyiy 349 
                     +y+V ++R+++ ++++
  MMETSP0890-20130614|7715_1 1263 YTQRYNVAMSRARHKIVLF 1281
                  5679***********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 2.16u 0.35s 00:00:02.51 Elapsed: 00:00:01.63
# Mc/sec: 2208.18
//
Query:       MMETSP0890-20130614|7716_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.5e-104  340.6  37.8    6.8e-20   71.0   1.2    9.0  8  PF12796.2  Ankyrin repeats (3 copies)
    4.2e-86  278.6  40.8    2.1e-10   39.7   0.1   17.2 17  PF00023.25 Ankyrin repeat
    3.8e-70  231.0  14.6    3.9e-09   36.6   0.0   11.9 12  PF13637.1  Ankyrin repeats (many copies)
    5.5e-63  207.4  33.4    2.1e-11   43.5   0.4   13.7 14  PF13857.1  Ankyrin repeats (many copies)
    2.8e-54  175.5  19.3    4.3e-05   23.2   0.0   17.1 18  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   3.1e-14   8.5e-11       1      85 [.       8      98 ..       8     101 .. 0.90
   2 !   71.0   1.2   2.5e-23   6.8e-20       1      87 [.     110     200 ..     110     202 .. 0.95
   3 !   67.9   0.3   2.4e-22   6.5e-19       1      86 [.     176     266 ..     176     269 .. 0.96
   4 !   57.3   0.0   4.8e-19   1.3e-15       1      78 [.     243     324 ..     243     328 .. 0.95
   5 !   54.1   0.0   4.6e-18   1.3e-14       2      87 ..     277     370 ..     276     372 .. 0.90
   6 !   68.2   0.9   1.9e-22   5.1e-19       2      87 ..     347     460 ..     346     462 .. 0.89
   7 !   17.2   0.3   1.6e-06    0.0043       3      80 ..     475     551 ..     473     560 .. 0.88
   8 !   41.3   1.0   4.6e-14   1.3e-10      22      78 ..     561     615 ..     552     678 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 3.1e-14
   PF12796.2  1 LhlAaengnlelvklLle.kgadvdl....getpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekgadv 85
                L  Aa+ g+   v+ +++ ++ dv+     + t++ +Aa+ g+ +  ++L++ +gad+ a+dk++ t+L+ A+  gh  ++++Ll+k  ++
  MMETSP0890-20130614|7716_1  8 LVAAASDGDERKVREFIQeNQIDVNSrdwdKLTAVVAAAAGGHSKLTQILIDeYGADPLARDKDNITALMEAAIGGHRQVAEFLLKKNPEL 98
                6789**********9997588999976665666******************989********************************97665 PP

  == domain 2    score: 71.0 bits;  conditional E-value: 2.5e-23
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 L lAa  g+l++++lL++  adv+     g ++L++Aa+ g++ +vklLleagad++a d+eg t+L+ A++ng   +v +L+++ga v++
  MMETSP0890-20130614|7716_1 110 LWLAAGEGQLKVAELLVKLDADVNNarsdGISALMAAASGGHTHVVKLLLEAGADIEAMDQEGLTALMNAAENGTESTVAMLIQHGAQVDA 200
                 679*********************87766666*******************************************************9986 PP

  == domain 3    score: 67.9 bits;  conditional E-value: 2.4e-22
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvn 86 
                 L++Aaeng  ++v +L+++ga vd     g tpL +Aa+ g+ +++ lLl++   + +k+  eg  +L++A+  gh+e+vklLle+gad+ 
  MMETSP0890-20130614|7716_1 176 LMNAAENGTESTVAMLIQHGAQVDAasnaGFTPLIVAAAGGHSKACALLLDKDPTIISKThSEGVDALMYAAAGGHAETVKLLLERGADPK 266
                 89**********************99888888**********************9998888****************************96 PP

  == domain 4    score: 57.3 bits;  conditional E-value: 4.8e-19
   PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                 L++Aa  g++e+vklLle gad+ +    g ++ + Aa  g+++++k+L++agad+   d++g t+L+ A+++g++++  +L
  MMETSP0890-20130614|7716_1 243 LMYAAAGGHAETVKLLLERGADPKRlhahGGSAFMEAATFGSVDVMKILIQAGADPLLIDDDGVTALMSAASQGKFDATTFL 324
                 8***********************99887777**************************9******************98887 PP

  == domain 5    score: 54.1 bits;  conditional E-value: 4.6e-18
   PF12796.2   2 hlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLle......agadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 + Aa+ g+++++k+L+++gad+ l    g t+L+ Aa++g++++  +L           d+ a  ++g t++++A+  ghl++vklL+ekgadvn 
  MMETSP0890-20130614|7716_1 277 MEAATFGSVDVMKILIQAGADPLLidddGVTALMSAASQGKFDATTFLAGpeyfgtTYLDLAA--DSGGTAMMFAAAGGHLDCVKLLVEKGADVNK 370
                 89**********************9988999******************98886554445555..59***************************95 PP

  == domain 6    score: 68.2 bits;  conditional E-value: 1.9e-22
   PF12796.2   2 hlAaengnlelvklLlekgadvdl..................get..........pLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                 ++Aa  g+l++vklL+ekgadv+                   g+t          +L +Aa+ g+l++v +Lle++adv  kd+eg ++L  Av  gh +++  L+++gad+n+
  MMETSP0890-20130614|7716_1 347 MFAAAGGHLDCVKLLVEKGADVNKlvhgtekyviqvaeqlaaGKTdvephkenvtALQVAAQGGHLDTVMYLLENNADVHIKDEEGLSALTNAVAGGHSKVAFALVKAGADPND 460
                 89*********************99987666666665555553338888888899*********************************************************96 PP

  == domain 7    score: 17.2 bits;  conditional E-value: 1.6e-06
   PF12796.2   3 lAaengnlelvklLlekgadvdlgetpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLle 80 
                  A++  + + + lL++kga ++     +  Aa++g  +++++++  + d+ + + +++ tpL++A+  g+  +v  Ll 
  MMETSP0890-20130614|7716_1 475 DAINAADDDFASLLVAKGAHFN--ADIIVSAASKGLNATIDAMIIINPDLPHVQnARNATPLFAAANEGQSTVVSSLLA 551
                 588889999*************..*********************9999844444789****************99996 PP

  == domain 8    score: 41.3 bits;  conditional E-value: 4.6e-14
   PF12796.2  22 dvdlgetpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                 d d g tpL++A+ +g+l+iv++L++agadvn+++++g+t+L++A  ng++ +  lL
  MMETSP0890-20130614|7716_1 561 DTD-GTTPLMAASVRGHLDIVSALIKAGADVNTQNNDGHTALMFAY-NGKAQVNALL 615
                 444.899*************************************96.4444444444 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.49   1.3e+03       9      32 ..      11      35 ..       8      36 .. 0.85
   2 !   12.8   0.0   2.5e-05     0.069       4      33 .]      40      70 ..      37      70 .. 0.88
   3 !   17.2   0.0   1.1e-06    0.0029       1      27 [.      71      97 ..      71     100 .. 0.89
   4 !   16.1   0.0   2.3e-06    0.0062       2      29 ..     106     133 ..     105     135 .. 0.94
   5 !   31.9   0.1   2.3e-11   6.4e-08       1      32 [.     138     169 ..     138     170 .. 0.95
   6 !   26.1   0.1   1.6e-09   4.3e-06       2      32 ..     172     202 ..     171     203 .. 0.94
   7 !   15.9   0.0   2.8e-06    0.0075       2      25 ..     205     228 ..     204     236 .. 0.87
   8 !   26.4   0.0   1.3e-09   3.5e-06       4      28 ..     241     265 ..     238     267 .. 0.92
   9 !   19.6   0.0   1.8e-07    0.0005       2      33 .]     272     303 ..     271     303 .. 0.90
  10 !    7.2   0.0    0.0016       4.3       1      21 [.     304     324 ..     304     328 .. 0.86
  11 !   27.6   0.0   5.4e-10   1.5e-06       2      30 ..     342     370 ..     341     371 .. 0.93
  12 !   23.9   0.1   7.6e-09   2.1e-05       4      32 ..     401     429 ..     398     430 .. 0.95
  13 !   12.6   0.0     3e-05     0.081       2      29 ..     432     459 ..     431     461 .. 0.94
  14 ?    0.4   0.1      0.22   5.9e+02      16      30 ..     483     497 ..     472     498 .. 0.85
  15 !    6.7   0.0    0.0022       5.9       4      29 ..     532     558 ..     529     562 .. 0.86
  16 !   39.7   0.1   7.6e-14   2.1e-10       1      33 []     563     595 ..     563     595 .. 0.98
  17 !    8.3   0.1   0.00067       1.8       1      32 [.     596     669 ..     596     670 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.49
                HHHTTHHHHHHHHHH.TTSSTTHBH CS
  PF00023.25  9 AalrgnlevvklLls.qGAdlnaqd 32
                Aa+ g+ + v+ +++ +  d+n +d
  MMETSP0890-20130614|7716_1 11 AASDGDERKVREFIQeNQIDVNSRD 35
                7777888889999999******998 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.5e-05
                BHHHHHHHTTHHHHHHHHHH.TTSSTTHBHT CS
  PF00023.25  4 TPLHlAalrgnlevvklLls.qGAdlnaqdd 33
                T+   Aa  g+ +  + L++ +GAd+ a+d+
  MMETSP0890-20130614|7716_1 40 TAVVAAAAGGHSKLTQILIDeYGADPLARDK 70
                5555799999*******************96 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 1.1e-06
                TSCBHHHHHHHTTHHHHHHHHHHTTSS CS
  PF00023.25  1 dGfTPLHlAalrgnlevvklLlsqGAd 27
                d  T+L+ Aa+ g+ +v+++Ll+++ +
  MMETSP0890-20130614|7716_1 71 DNITALMEAAIGGHRQVAEFLLKKNPE 97
                678*******************98765 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 2.3e-06
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdln 29 
                 G ++L lAa  g+l+v++lL++  Ad+n
  MMETSP0890-20130614|7716_1 106 GVSALWLAAGEGQLKVAELLVKLDADVN 133
                 889************************9 PP

  == domain 5    score: 31.9 bits;  conditional E-value: 2.3e-11
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 dG ++L+ Aa+ g++ vvklLl++GAd+ a d
  MMETSP0890-20130614|7716_1 138 DGISALMAAASGGHTHVVKLLLEAGADIEAMD 169
                 8***************************9866 PP

  == domain 6    score: 26.1 bits;  conditional E-value: 1.6e-09
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 G T+L+ Aa++g  + v +L+++GA ++a  
  MMETSP0890-20130614|7716_1 172 GLTALMNAAENGTESTVAMLIQHGAQVDAAS 202
                 99**************************975 PP

  == domain 7    score: 15.9 bits;  conditional E-value: 2.8e-06
                 SCBHHHHHHHTTHHHHHHHHHHTT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqG 25 
                 GfTPL +Aa  g+ + + lLl++ 
  MMETSP0890-20130614|7716_1 205 GFTPLIVAAAGGHSKACALLLDKD 228
                 9********************975 PP

  == domain 8    score: 26.4 bits;  conditional E-value: 1.3e-09
                 BHHHHHHHTTHHHHHHHHHHTTSST CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdl 28 
                  +L++Aa  g++e vklLl++GAd+
  MMETSP0890-20130614|7716_1 241 DALMYAAAGGHAETVKLLLERGADP 265
                 59**********************8 PP

  == domain 9    score: 19.6 bits;  conditional E-value: 1.8e-07
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 G ++ + Aa  g+++v+k L+++GAd+ + dd
  MMETSP0890-20130614|7716_1 272 GGSAFMEAATFGSVDVMKILIQAGADPLLIDD 303
                 55789**********************98886 PP

  == domain 10    score: 7.2 bits;  conditional E-value: 0.0016
                 TSCBHHHHHHHTTHHHHHHHH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklL 21 
                 dG T+L+ Aa+ g  +  ++L
  MMETSP0890-20130614|7716_1 304 DGVTALMSAASQGKFDATTFL 324
                 8***********987776665 PP

  == domain 11    score: 27.6 bits;  conditional E-value: 5.4e-10
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlna 30 
                 G T+ + Aa  g+l++vklL+++GAd+n 
  MMETSP0890-20130614|7716_1 342 GGTAMMFAAAGGHLDCVKLLVEKGADVNK 370
                 569************************95 PP

  == domain 12    score: 23.9 bits;  conditional E-value: 7.6e-09
                 BHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 T+L +Aa+ g+l+ v +Ll+++Ad++++d
  MMETSP0890-20130614|7716_1 401 TALQVAAQGGHLDTVMYLLENNADVHIKD 429
                 9**************************98 PP

  == domain 13    score: 12.6 bits;  conditional E-value: 3e-05
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
  PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdln 29 
                 G ++L  A+  g+ +v+  L+++GAd+n
  MMETSP0890-20130614|7716_1 432 GLSALTNAVAGGHSKVAFALVKAGADPN 459
                 889999*********************9 PP

  == domain 14    score: 0.4 bits;  conditional E-value: 0.22
                 HHHHHHHHTTSSTTH CS
  PF00023.25  16 evvklLlsqGAdlna 30 
                 + ++lL+ +GA  na
  MMETSP0890-20130614|7716_1 483 DFASLLVAKGAHFNA 497
                 7899*******9997 PP

  == domain 15    score: 6.7 bits;  conditional E-value: 0.0022
                 BHHHHHHHTTHHHHHHHHHH.TTSSTT CS
  PF00023.25   4 TPLHlAalrgnlevvklLls.qGAdln 29 
                 TPL  Aa  g+  vv+ Ll  q A  n
  MMETSP0890-20130614|7716_1 532 TPLFAAANEGQSTVVSSLLAvQPAAAN 558
                 *******************98777655 PP

  == domain 16    score: 39.7 bits;  conditional E-value: 7.6e-14
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                 dG TPL+ A+ rg+l++v+ L+++GAd+n q++
  MMETSP0890-20130614|7716_1 563 DGTTPLMAASVRGHLDIVSALIKAGADVNTQNN 595
                 8******************************97 PP

  == domain 17    score: 8.3 bits;  conditional E-value: 0.00067
                 TSCBHHHHHHHTT..........................................HHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrg..........................................nlevvklLlsqGAdlnaqd 32 
                 dG T+L+ A                                               l+++ lL+  GAd  + d
  MMETSP0890-20130614|7716_1 596 DGHTALMFAYNGKaqvnalltkymqviqnkkgsdasiasadndsnlqlintsnkaFLDIIALLIASGADQKIAD 669
                 899*****999989999999999999999999999999999999999999999999************976665 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-05      0.04       7      54 .]      10      58 ..       6      58 .. 0.92
   2 !   19.1   0.0   4.6e-07    0.0012      19      54 .]      56      92 ..      53      92 .. 0.91
   3 !   30.9   0.1   9.2e-11   2.5e-07       2      54 .]     107     159 ..     106     159 .. 0.96
   4 !   31.3   0.0   6.7e-11   1.8e-07       3      53 ..     141     191 ..     141     191 .. 0.95
   5 !   33.2   0.0   1.7e-11   4.7e-08       1      54 []     172     225 ..     172     225 .. 0.97
   6 !   16.0   0.0   4.3e-06     0.012       2      27 ..     240     265 ..     239     273 .. 0.91
   7 !   28.5   0.0     5e-10   1.4e-06       3      53 ..     274     324 ..     272     325 .. 0.96
   8 !   19.7   0.0   2.9e-07    0.0008       3      30 ..     344     371 ..     342     378 .. 0.92
   9 !   36.6   0.0   1.4e-12   3.9e-09       2      53 ..     400     451 ..     399     452 .. 0.94
  10 ?    1.5   0.1      0.15   4.2e+02      26      42 ..     521     538 ..     469     550 .. 0.64
  11 !   28.4   0.0   5.3e-10   1.4e-06       1      41 [.     564     604 ..     564     615 .. 0.91
  12 ?    0.3   0.0      0.37     1e+03      14      37 ..     652     675 ..     643     687 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.5e-05
   PF13637.1  7 yaaisgrlelvklLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54
                 aa++g+++ v+  + e+ id+n +d +  ta+  Aa +g+ ++++ L+
  MMETSP0890-20130614|7716_1 10 AAASDGDERKVREFIqENQIDVNSRDWDKLTAVVAAAAGGHSKLTQILI 58
                6899***********6789******999***************999997 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 4.6e-07
   PF13637.1 19 lLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54
                 L+ e+g+d+ ++d+++ taL  Aa +g+ +++++Ll
  MMETSP0890-20130614|7716_1 56 ILIdEYGADPLARDKDNITALMEAAIGGHRQVAEFLL 92
                567578******************************8 PP

  == domain 3    score: 30.9 bits;  conditional E-value: 9.2e-11
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 ++aL  aa  g l++++lL++ ++d+n   ++G +aL  Aa++g+ +++klLl
  MMETSP0890-20130614|7716_1 107 VSALWLAAGEGQLKVAELLVKLDADVNNARSDGISALMAAASGGHTHVVKLLL 159
                 789999999*******************************************8 PP

  == domain 4    score: 31.3 bits;  conditional E-value: 6.7e-11
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 +aL+ aa+ g++ +vklLle g+di + d +G taL  Aa++g  + + +L
  MMETSP0890-20130614|7716_1 141 SALMAAASGGHTHVVKLLLEAGADIEAMDQEGLTALMNAAENGTESTVAML 191
                 689****************************************98888877 PP

  == domain 5    score: 33.2 bits;  conditional E-value: 1.7e-11
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                 gltaL++aa  g + +v+ L+++g+++++  + G+t+L++Aa +g+ +++ lLl
  MMETSP0890-20130614|7716_1 172 GLTALMNAAENGTESTVAMLIQHGAQVDAASNAGFTPLIVAAAGGHSKACALLL 225
                 689***************************999******************997 PP

  == domain 6    score: 16.0 bits;  conditional E-value: 4.3e-06
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidi 27 
                 + aL+yaa+ g+ e+vklLle+g+d+
  MMETSP0890-20130614|7716_1 240 VDALMYAAAGGHAETVKLLLERGADP 265
                 679**********************8 PP

  == domain 7    score: 28.5 bits;  conditional E-value: 5e-10
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 +a++ aa +g +++ k L++ g+d+  +d++G taL  Aa+ g ++++ +L
  MMETSP0890-20130614|7716_1 274 SAFMEAATFGSVDVMKILIQAGADPLLIDDDGVTALMSAASQGKFDATTFL 324
                 7899*******************************************9998 PP

  == domain 8    score: 19.7 bits;  conditional E-value: 2.9e-07
   PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt 30 
                 ta++ aa+ g+l++vklL+ekg+d+n++
  MMETSP0890-20130614|7716_1 344 TAMMFAAAGGHLDCVKLLVEKGADVNKL 371
                 899***********************86 PP

  == domain 9    score: 36.6 bits;  conditional E-value: 1.4e-12
   PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                 +taL +aa+ g+l++v++Lle+++d++ +de+G +aL  A+ +g+ +++  L
  MMETSP0890-20130614|7716_1 400 VTALQVAAQGGHLDTVMYLLENNADVHIKDEEGLSALTNAVAGGHSKVAFAL 451
                 79*******************************************9987665 PP

  == domain 10    score: 1.5 bits;  conditional E-value: 0.15
   PF13637.1  26 d.inrtdesGntaLhiAa 42 
                 d ++ +++++ t+L  Aa
  MMETSP0890-20130614|7716_1 521 DlPHVQNARNATPLFAAA 538
                 344455888888888887 PP

  == domain 11    score: 28.4 bits;  conditional E-value: 5.3e-10
   PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiA 41 
                 g+t+L+ a   g+l++v  L++ g+d+n ++++G taL +A
  MMETSP0890-20130614|7716_1 564 GTTPLMAASVRGHLDIVSALIKAGADVNTQNNDGHTALMFA 604
                 579************************************99 PP

  == domain 12    score: 0.3 bits;  conditional E-value: 0.37
   PF13637.1  14 lelvklLlekgidinrt..desGnta 37 
                 l++++lL+++g+d  ++  d+ Gn a
  MMETSP0890-20130614|7716_1 652 LDIIALLIASGAD--QKiaDKAGNIA 675
                 6899********9..33456666655 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0     1e-09   2.8e-06       4      53 ..      27      76 ..      24      79 .. 0.92
   2 !    9.4   0.0   0.00041       1.1      18      42 ..      74      99 ..      71     103 .. 0.85
   3 !   10.0   0.1   0.00026      0.71       1      49 [.      91     139 ..      91     142 .. 0.91
   4 !   30.0   0.2   1.4e-10   3.7e-07       2      54 ..     126     177 ..     125     179 .. 0.83
   5 !   20.1   0.0   1.8e-07    0.0005       1      37 [.     191     226 ..     191     231 .. 0.91
   6 !   22.4   0.0   3.3e-08   8.9e-05      13      51 ..     236     274 ..     232     280 .. 0.86
   7 !   12.9   0.0   3.2e-05     0.088      18      53 ..     274     309 ..     267     310 .. 0.89
   8 !   13.0   0.0   3.1e-05     0.085       1      36 [.     291     325 ..     291     338 .. 0.83
   9 !   19.9   0.0     2e-07   0.00056      13      44 ..     340     370 ..     333     374 .. 0.87
  10 !   26.8   0.1   1.3e-09   3.7e-06      14      55 ..     397     438 ..     388     439 .. 0.90
  11 ?    2.7   0.1     0.053   1.5e+02       2      43 ..     452     496 ..     451     498 .. 0.72
  12 !   13.7   0.1   1.9e-05     0.051       7      49 ..     521     564 ..     517     564 .. 0.88
  13 !   43.5   0.4   7.6e-15   2.1e-11       6      56 .]     554     604 ..     549     604 .. 0.94
  14 ?   -0.3   0.0      0.48   1.3e+03       5      53 ..     627     676 ..     625     678 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1e-09
   PF13857.1  4 hgpadvnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltal 53
                + ++dvn++d+ + t+   Aa gg++ + ++L+ ++gad+ +rd+d+ tal
  MMETSP0890-20130614|7716_1 27 N-QIDVNSRDWDKLTAVVAAAAGGHSKLTQILIdEYGADPLARDKDNITAL 76
                3.59*******************************************9998 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00041
   PF13857.1 18 tpLhlAakggalevvrlLl.apgadl 42
                t+L+ Aa gg+ +v+++Ll ++++ l
  MMETSP0890-20130614|7716_1 74 TALMEAAIGGHRQVAEFLLkKNPELL 99
                9******************7666655 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00026
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdg 49 
                 Ll+++p+ +n    +g+++L lAa  g+l v++lL++  ad n   sdg
  MMETSP0890-20130614|7716_1  91 LLKKNPELLNFVAASGVSALWLAAGEGQLKVAELLVKLDADVNNARSDG 139
                 78888999999999**********************9999999888887 PP

  == domain 4    score: 30.0 bits;  conditional E-value: 1.4e-10
   PF13857.1   2 lehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                 ++ + ++++ ++d+   ++L+ Aa+gg+++vv+lLl++gad+ + d +gltal 
  MMETSP0890-20130614|7716_1 126 VKLDaDVNNARSDGI--SALMAAASGGHTHVVKLLLEAGADIEAMDQEGLTALM 177
                 566644555555555..***********************************96 PP

  == domain 5    score: 20.1 bits;  conditional E-value: 1.8e-07
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLla 37 
                 L++hg a+v+a  ++g+tpL +Aa gg++ ++ lLl+
  MMETSP0890-20130614|7716_1 191 LIQHG-AQVDAASNAGFTPLIVAAAGGHSKACALLLD 226
                 899**.9999999**********************93 PP

  == domain 6    score: 22.4 bits;  conditional E-value: 3.3e-08
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdglt 51 
                 + +g+ +L++Aa gg++e v+lLl++gad++   ++g +
  MMETSP0890-20130614|7716_1 236 HSEGVDALMYAAAGGHAETVKLLLERGADPKRLHAHGGS 274
                 67899*************************988777744 PP

  == domain 7    score: 12.9 bits;  conditional E-value: 3.2e-05
   PF13857.1  18 tpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                 ++++ Aa  g+++v+++L+++gad+ l d dg tal
  MMETSP0890-20130614|7716_1 274 SAFMEAATFGSVDVMKILIQAGADPLLIDDDGVTAL 309
                 78889***************************8887 PP

  == domain 8    score: 13.0 bits;  conditional E-value: 3.1e-05
   PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl 36 
                 L+++g ad+   d  g+t+L+ Aa++g  ++  +L 
  MMETSP0890-20130614|7716_1 291 LIQAG-ADPLLIDDDGVTALMSAASQGKFDATTFLA 325
                 78999.**********************99988877 PP

  == domain 9    score: 19.9 bits;  conditional E-value: 2e-07
   PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnl 44 
                 d gg t+ ++Aa gg+l++v+lL+++gad n 
  MMETSP0890-20130614|7716_1 340 DSGG-TAMMFAAAGGHLDCVKLLVEKGADVNK 370
                 4455.************************985 PP

  == domain 10    score: 26.8 bits;  conditional E-value: 1.3e-09
   PF13857.1  14 eggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldl 55 
                 ++++t+L +Aa gg+l+ v +Ll+++ad +++d++gl+al  
  MMETSP0890-20130614|7716_1 397 KENVTALQVAAQGGHLDTVMYLLENNADVHIKDEEGLSALTN 438
                 5566***********************************975 PP

  == domain 11    score: 2.7 bits;  conditional E-value: 0.053
   PF13857.1   2 lehg.padvnatdeggn..tpLhlAakggalevvrlLlapgadln 43 
                 +++g +++  + de+    ++L  A+++ + +++ lL+a+ga+ n
  MMETSP0890-20130614|7716_1 452 VKAGaDPNDAYVDEQAKnhNLLEDAINAADDDFASLLVAKGAHFN 496
                 56663333333333333679******************9999987 PP

  == domain 12    score: 13.7 bits;  conditional E-value: 1.9e-05
   PF13857.1   7 advnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdg 49 
                 + ++ ++ ++ tpL  Aa+ g+++vv  Ll  ++a++n  d+dg
  MMETSP0890-20130614|7716_1 521 DLPHVQNARNATPLFAAANEGQSTVVSSLLaVQPAAANQYDTDG 564
                 55666666667******************************998 PP

  == domain 13    score: 43.5 bits;  conditional E-value: 7.6e-15
   PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                 pa++n++d+ g+tpL+ A  +g+l++v  L+++gad n++++dg tal +A
  MMETSP0890-20130614|7716_1 554 PAAANQYDTDGTTPLMAASVRGHLDIVSALIKAGADVNTQNNDGHTALMFA 604
                 8999********************************************877 PP

  == domain 14    score: -0.3 bits;  conditional E-value: 0.48
   PF13857.1   5 g.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                 g +a++ + d+ +n  L ++ ++  l+++ lL+a gad ++ d+ g+ a 
  MMETSP0890-20130614|7716_1 627 GsDASIASADNDSNLQLINTSNKAFLDIIALLIASGADQKIADKAGNIAA 676
                 66677778888888889999999999999999999999999998887665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.7   1.9e+03       9      29 ..      11      32 ..       8      33 .. 0.82
   2 ?    2.0   0.0      0.11   2.9e+02       4      29 ..      40      66 ..      37      67 .. 0.78
   3 !    9.3   0.0   0.00049       1.4       3      27 ..      73      97 ..      71     100 .. 0.88
   4 !    8.0   0.0    0.0013       3.4       2      29 ..     106     133 ..     105     133 .. 0.94
   5 !   21.3   0.0   6.4e-08   0.00018       1      29 [.     138     166 ..     138     167 .. 0.94
   6 !   17.7   0.0   9.6e-07    0.0026       2      30 .]     172     200 ..     171     200 .. 0.94
   7 !    6.6   0.0    0.0035       9.6       2      27 ..     205     230 ..     204     233 .. 0.90
   8 !   17.3   0.0   1.3e-06    0.0035       5      28 ..     242     265 ..     238     266 .. 0.93
   9 !   14.5   0.0   9.9e-06     0.027       2      28 ..     272     298 ..     271     300 .. 0.92
  10 !    6.0   0.0    0.0058        16       1      17 [.     304     320 ..     304     324 .. 0.86
  11 !   18.6   0.0   4.8e-07    0.0013       2      30 .]     342     370 ..     330     370 .. 0.95
  12 !   19.2   0.0   3.2e-07   0.00087       4      29 ..     401     426 ..     398     427 .. 0.93
  13 ?    2.3   0.0     0.088   2.4e+02       2      29 ..     432     459 ..     431     460 .. 0.85
  14 ?   -0.4   0.1      0.66   1.8e+03      13      30 .]     480     497 ..     470     497 .. 0.78
  15 ?   -0.4   0.0      0.67   1.8e+03       4      22 ..     532     550 ..     529     556 .. 0.88
  16 !   23.2   0.0   1.6e-08   4.3e-05       1      30 []     563     592 ..     563     592 .. 0.96
  17 ?   -1.1   0.0       1.1   2.9e+03       1      14 [.     596     608 ..     596     621 .. 0.70
  18 ?   -0.8   0.0      0.88   2.4e+03      15      27 ..     652     664 ..     646     667 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.7
   PF13606.1  9 AasngrielveaLle.ngadin 29
                Aas g    v++ ++ n +d+n
  MMETSP0890-20130614|7716_1 11 AASDGDERKVREFIQeNQIDVN 32
                8889999999999954899998 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.11
   PF13606.1  4 TpLhlAasngrielveaLle.ngadin 29
                T+   Aa  g+ +l ++L++ +gad+ 
  MMETSP0890-20130614|7716_1 40 TAVVAAAAGGHSKLTQILIDeYGADPL 66
                55556777889********649***86 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00049
   PF13606.1  3 nTpLhlAasngrielveaLlengad 27
                 T+L+ Aa  g+ +++e+Ll++ + 
  MMETSP0890-20130614|7716_1 73 ITALMEAAIGGHRQVAEFLLKKNPE 97
                69******************98765 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0013
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                 G ++L lAa  g+++++e+L++  ad+n
  MMETSP0890-20130614|7716_1 106 GVSALWLAAGEGQLKVAELLVKLDADVN 133
                 668999********************98 PP

  == domain 5    score: 21.3 bits;  conditional E-value: 6.4e-08
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                 +G ++L+ Aas g++ +v++Lle+gadi 
  MMETSP0890-20130614|7716_1 138 DGISALMAAASGGHTHVVKLLLEAGADIE 166
                 6889***********************96 PP

  == domain 6    score: 17.7 bits;  conditional E-value: 9.6e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                 G T+L+ Aa+ng  + v  L+++ga+++a
  MMETSP0890-20130614|7716_1 172 GLTALMNAAENGTESTVAMLIQHGAQVDA 200
                 89***********************9975 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.0035
   PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                 G TpL +Aa  g+ +++ +Ll++ + 
  MMETSP0890-20130614|7716_1 205 GFTPLIVAAAGGHSKACALLLDKDPT 230
                 89*******************98765 PP

  == domain 8    score: 17.3 bits;  conditional E-value: 1.3e-06
   PF13606.1   5 pLhlAasngrielveaLlengadi 28 
                 +L++Aa  g+ e v++Lle+gad+
  MMETSP0890-20130614|7716_1 242 ALMYAAAGGHAETVKLLLERGADP 265
                 8*********************97 PP

  == domain 9    score: 14.5 bits;  conditional E-value: 9.9e-06
   PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                 G ++++ Aa +g+++++++L+++gad+
  MMETSP0890-20130614|7716_1 272 GGSAFMEAATFGSVDVMKILIQAGADP 298
                 7799**********************8 PP

  == domain 10    score: 6.0 bits;  conditional E-value: 0.0058
   PF13606.1   1 nGnTpLhlAasngriel 17 
                 +G T+L+ Aas+g+ ++
  MMETSP0890-20130614|7716_1 304 DGVTALMSAASQGKFDA 320
                 689**********9886 PP

  == domain 11    score: 18.6 bits;  conditional E-value: 4.8e-07
   PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                 G T+++ Aa  g+++ v++L+e+gad+n+
  MMETSP0890-20130614|7716_1 342 GGTAMMFAAAGGHLDCVKLLVEKGADVNK 370
                 679************************96 PP

  == domain 12    score: 19.2 bits;  conditional E-value: 3.2e-07
   PF13606.1   4 TpLhlAasngrielveaLlengadin 29 
                 T+L +Aa+ g+++ v +Llen ad++
  MMETSP0890-20130614|7716_1 401 TALQVAAQGGHLDTVMYLLENNADVH 426
                 9***********************97 PP

  == domain 13    score: 2.3 bits;  conditional E-value: 0.088
   PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                 G ++L  A+  g+ +++ aL+++gad+n
  MMETSP0890-20130614|7716_1 432 GLSALTNAVAGGHSKVAFALVKAGADPN 459
                 667777888889999999********99 PP

  == domain 14    score: -0.4 bits;  conditional E-value: 0.66
   PF13606.1  13 grielveaLlengadina 30 
                    +++++L+ +ga++na
  MMETSP0890-20130614|7716_1 480 ADDDFASLLVAKGAHFNA 497
                 466899********9996 PP

  == domain 15    score: -0.4 bits;  conditional E-value: 0.67
   PF13606.1   4 TpLhlAasngrielveaLl 22 
                 TpL+ Aa  g+  +v+ Ll
  MMETSP0890-20130614|7716_1 532 TPLFAAANEGQSTVVSSLL 550
                 9******999999999887 PP

  == domain 16    score: 23.2 bits;  conditional E-value: 1.6e-08
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                 +G TpL+ A  +g++++v+aL+++gad+n+
  MMETSP0890-20130614|7716_1 563 DGTTPLMAASVRGHLDIVSALIKAGADVNT 592
                 699*************************96 PP

  == domain 17    score: -1.1 bits;  conditional E-value: 1.1
   PF13606.1   1 nGnTpLhlAasngr 14 
                 +G T+L+ A +ng+
  MMETSP0890-20130614|7716_1 596 DGHTALMFA-YNGK 608
                 688999987.5554 PP

  == domain 18    score: -0.8 bits;  conditional E-value: 0.88
   PF13606.1  15 ielveaLlengad 27 
                 ++++ +L+ +gad
  MMETSP0890-20130614|7716_1 652 LDIIALLIASGAD 664
                 699********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.13u 0.38s 00:00:01.50 Elapsed: 00:00:01.06
# Mc/sec: 1618.67
//
Query:       MMETSP0890-20130614|7718_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   13.9   0.6        3.6    8.3   0.1    2.5  2  PF13428.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.011   1.5e+02      12      27 ..      51      66 ..      39      71 .. 0.84
   2 ?    8.3   0.1   0.00027       3.6       4      35 ..      81     111 ..      79     122 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.011
   PF13428.1 12 lalGdpdeAiallrra 27
                l++G++++ ++ll ra
  MMETSP0890-20130614|7718_1 51 LNRGNYKRSVELLSRA 66
                6799*********998 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00027
   PF13428.1   4 llalarallalGdpdeAiallrralalaPdda 35 
                 +l la+al a+ +  +  +ll ++ +++Pd++
  MMETSP0890-20130614|7718_1  81 QLWLAQALYAADNRSQSFRLLTAL-EKHPDRD 111
                 688****************99987.9999953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.75
# Mc/sec: 670.98
//
Query:       MMETSP0890-20130614|7719_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-06   26.0   0.0    0.00075   19.1   0.0    2.3  2  PF00334.14 Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> PF00334.14  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0017        23       3      33 ..      71     101 ..      69     128 .. 0.86
   2 !   19.1   0.0   5.5e-08   0.00075      85     125 ..     248     299 ..     218     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0017
                 EEEEE-HHHHCTT-HHHHHHHHHH---EEEE CS
  PF00334.14   3 tlvliKPdavkrgligeiisrleekglkiva 33 
                 +++ iKP+av + + + + ++l e g +i++
  MMETSP0890-20130614|7719_1  71 AFLFIKPHAVTDPVKDLVKKKLAEVGISIAS 101
                 6899*********9999999**999999975 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 5.5e-08
                 HH----STTCS------------G...........GG-SEEE--SHHHHHHH CS
  PF00334.14  85 ellGatnpaeaapgtiRgdfavsl...........geNlvHgSdseesaere 125
                 ++lG tnp+eaa+g++R+  a ++           g+N vH+S+s+ +a  e
  MMETSP0890-20130614|7719_1 248 KVLGTTNPNEAAAGSLRKIIAQDWqalglteppntGDNGVHASASPFEALSE 299
                 689*********************9999999988888********9998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.80
# Mc/sec: 1108.32
//
Query:       MMETSP0890-20130614|7721_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-54  183.5   0.0    4.7e-54  183.2   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    9.4e-18   63.7   0.0    1.2e-17   63.4   0.0    1.1  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    1.5e-13   50.1   0.0    3.5e-12   45.7   0.0    2.0  1  PF02719.10 Polysaccharide biosynthesis protein
    2.6e-13   49.4   0.0    3.6e-13   48.9   0.0    1.2  1  PF04321.12 RmlD substrate binding domain
    1.3e-11   43.7   0.0    3.8e-11   42.2   0.0    1.7  1  PF07993.7  Male sterility protein
    1.1e-07   31.8   0.4    6.5e-07   29.3   0.3    2.3  1  PF00106.20 short chain dehydrogenase
    7.9e-05   22.6   0.2    0.00034   20.5   0.1    1.9  1  PF13460.1  NADH(P)-binding
    0.00034   20.3   0.0    0.00075   19.2   0.0    1.6  1  PF13950.1  UDP-glucose 4-epimerase C-term subunit
     0.0014   18.1   0.0      0.004   16.7   0.0    1.7  1  PF08659.5  KR domain
  ------ inclusion threshold ------
      0.069   13.0   0.2       0.29   11.0   0.1    2.0  1  PF02254.13 TrkA-N domain


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   0.0   3.4e-57   4.7e-54       1     236 []       6     250 ..       6     250 .. 0.93

  Alignments for each domain:
  == domain 1    score: 183.2 bits;  conditional E-value: 3.4e-57
                 EEEE--------HHHHHHHHH-TEEE...........EESSCSTCCCCCCHHH......TBEEEB--TT-HHHHHHHHHHH.T.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE- CS
  PF01370.16   1 ilVtGatGfiGsalveallekgyevv...........nlirrtrseslatvri......rvelveldltdkdalerlfaee.qpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetpl.gplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgdvageiyniG 236
                 ilVtG++GfiGs+++e+ll +g++vv           ++ r++ ++             r+++++++l++k+ +e++ + e +p  V+h+Aa++gv+ s++dp  ++++nve t+ lle+a k+g + f+fasSs vyg  +++ + E++ +  p+spYaa+K a e +++ ya+ y++n+ +lr f+v+Gpr   ++++    +++ ki +g +++ +gdG+++Rd+ y++D++ ++++ l+++  + ++yn+G
  MMETSP0890-20130614|7721_1   6 ILVTGVAGFIGSHVAEQLLLRGEDVVgidemndyysvEVKRANIAH------LqelggeRFRFYQGNLCNKEFVENIWKIEkNPRRVVHMAARAGVRPSIDDPIIYVKSNVEATTVLLEMAAKYGSDSFVFASSSSVYGGSKKTVFGETDVVdFPVSPYAATKKACELIAHTYAHLYKMNIAALRFFTVFGPR---GRPDMAPLKFVDKISRGVPIQQYGDGSSSRDYTYIDDIVAGVIASLDKPM-GYQVYNLG 250
                 8***********************9999988554443333333333......2556677********************9999*********************************************************************9****************************************...9*************************************************.******98 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   8.5e-21   1.2e-17       1     269 [.       7     269 ..       7     278 .. 0.77

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 8.5e-21
  PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvld.......lrespelleelsklqvkt..vlegDvtdkekleeale...gvdvvihtaaiidvlgkaerde.ilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGdEetpyesthkdaYaesKalAEklvlkangrtlknggrllTcAlRpagiyGeg.dkllvr.aleellksglallkigekevlsdrvYvgNvawahilaaraLqdpkkasaiaGqaYfisddsPvesyedfnrtllkelg 269
                 lVtG +GF+G+++ ++Ll ++e  +v  +d       ++ ++    +l++l+ +   + +g +++ke +e+  +   +   v+h+aa   v+  + +   ++k nv+ T  +le+++k g   +v+ Ss +v g+   ++ ++ G  et     + ++Ya +K+  E +             ++   AlR  +++G++ ++ + + + +  +  g  + ++g+ ++  d +Y + ++   i     L++p     +  q+Y   ++ P++   df   + k+ g
  MMETSP0890-20130614|7721_1   7 LVTGVAGFIGSHVAEQLLLRGE--DVVGIDemndyysVEVKRANIAHLQELGGERfrFYQGNLCNKEFVENIWKiekNPRRVVHMAARAGVRPSIDDPIiYVKSNVEATTVLLEMAAKYGSDSFVFASSSSVYGG--SKKTVF-G--ETDVVDFPVSPYAATKKACELIAHTYAH-----LYKMNIAALRFFTVFGPRgRPDMAPlKFVDKISRGVPIQQYGDGSSSRDYTYIDDIVAGVIA---SLDKP-----MGYQVYNLGNGLPTR-LIDFIKLVEKATG 269
                 7*******************96..555555444565534444444455555555577************998752226789**********9977666515699*******************************..666666.4..567778899********99855444444.....56899***********86144554424566777888999*****************988775...46666.....777888888888888.8888877777776 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   2.6e-15   3.5e-12       1     250 [.       6     271 ..       6     280 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 2.6e-15
  PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeieke...leeelkkeklkveivpvigdvrdkerleeale.elkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagvekvvliS...............tDKAvnPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlgSrG..Svipl.Fkkqikeggpvt.vTdpemtRyfmtieeavqLvlqagalakggeifvldmGepvkivdlakalielsgle 250
                 +lvtG +G iGs++ +q+l +    + + e +++   e+++    + +el  e+++++     g++ +ke +e++ + e ++  v+h AA   V      p+  vk Nv +t+ ++e+a ++g +++v+ S               tD    P++ + atK+++e+++ ++a+     k+++++ Rf  V+g rG   + pl F ++i++g p+    d +  R +  i++ v  v+ ++ +  g +++ l  G p++++d  k + + +g++
  MMETSP0890-20130614|7721_1   6 ILVTGVAGFIGSHVAEQLLLRGEDVVGIDEMNDYYSVEVKRAniaHLQELGGERFRFY----QGNLCNKEFVENIWKiEKNPRRVVHMAARAGVRPSIDDPIIYVKSNVEATTVLLEMAAKYGSDSFVFASsssvyggskktvfgeTDVVDFPVSPYAATKKACELIAHTYAHLY---KMNIAALRFFTVFGPRGrpDMAPLkFVDKISRGVPIQqYGDGSSSRDYTYIDDIVAGVIASLDKPMGYQVYNLGNGLPTRLIDFIKLVEKATGKK 271
                 89**************************999999999999996665566777788888....89999999999998745689************888889999*************************99844444443443333345555799*************99999988...89***************55599977********999636899999*9*********************************999998887777654 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.6e-16   3.6e-13       3     235 ..       6     272 ..       4     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.6e-16
                 EEEE--------HHHHHH----EEEEE--TT...........................T--TT-HHHHHHHHH.HH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---.EEEEEEEGGG-----SS-B-TTS---.--S----TTT---HHHHH....H-SSEEEEEE-SEE--.--..-HHHHHHH-----SEEEEESS-B--..-EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH----- CS
  PF04321.12   3 ilvtGanGqlGteLaralkeegvevvaldre...........................eldltdpeavaalvk.eakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavga.llihiSTdyVFdGekkrpYeeddeta.PlnvYGrtKlaGEqavla....anpkalivRtawvygekgk..nfvktmlrlaaereelkvvaDqlgs..PTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadg 235
                 ilvtG  G +G+++a++l  +g +vv +d+                            + +l ++e v+++ k e++p+ vv++AA   v    +++    + n+e++  l e+aa++g+  +++ S+  V+ G+kk+ + e+d ++ P++ Y++tK a E    +    ++ + + +R+  v+g +g+      +++++++++ +++   D   s   T+ +d+ + ++a l+k +     + vy+l n   t  +df + + k++g + 
  MMETSP0890-20130614|7721_1   6 ILVTGVAGFIGSHVAEQLLLRGEDVVGIDEMndyysvevkraniahlqelggerfrfyQGNLCNKEFVENIWKiEKNPRRVVHMAARAGVRPSIDDPIIYVKSNVEATTVLLEMAAKYGSdSFVFASSSSVYGGSKKTVFGETDVVDfPVSPYAATKKACELIAHTyahlYKMNIAALRFFTVFGPRGRpdMAPLKFVDKISRGVPIQQYGDGSSSrdYTYIDDIVAGVIASLDKPMG----YQVYNLGNGLPTRLIDFIKLVEKATGKKA 272
                 9***************************88789*************************************9975778******************************************8469*********************9977*************9988854434557888*********8874356678888888888888888865431168888888888888888887....88888888888888888877777776655 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.8e-14   3.8e-11       1     200 [.       8     190 ..       8     248 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 2.8e-14
   PF07993.7   1 lTGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepyke...llrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivg 200
                 +TG+ Gf+G+++ e+ll + ++  ++         ++++    e++++++ +   +   er ++++g+l+++++    e++ ++ ++   ++h+AA   +  ++++   +++ Nv++t  +le+a+k  + ++++ S++ v+g  +++v          e +  +     Y+ +K + E + +++++  +++++ +R  ++ g
  MMETSP0890-20130614|7721_1   8 VTGVAGFIGSHVAEQLLLRGED--VVGID------EMNDYYSVEVKRANIAHLQ-ELGGERFRFYQGNLCNKEFV---ENIWKIEKNPRRVVHMAARAGVRPSIDDpiiYVKSNVEATTVLLEMAAKYGSDSFVFASSSSVYGGSKKTV--------FGETDVVDFPVSPYAATKKACELIAHTYAHLYKMNIAALRFFTVFG 190
                 8****************99996..33332......3344444455555555444.3569**************85...7777899*******************9988889***************************66666666444........445555555566*****************99999999999888887 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.3   4.7e-10   6.5e-07       1     142 [.       4     140 ..       4     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 4.7e-10
                 -EEEE---------HHHHHHHHHSSEEEEEEESS...SHHHHHHHHHHHHH--.-EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHHHSS CS
  PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrr..edapgaaeliaelealg.aevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltldadlgafvlfSSvagvlgs 142
                 +++l+TG +g +G ++A++L+ +g  ++ + + +   + +  ++ ia+l++lg +++++++ ++ +++ ++++ +  + +    + vvh a+ +   ++      ++    ++ +v+++ +l e +++ + ++fv+ SS +   gs
  MMETSP0890-20130614|7721_1   4 KVILVTGVAGFIGSHVAEQLLLRGEDVVGIDEMNdyYSVEVKRANIAHLQELGgERFRFYQGNLCNKEFVENIWKIEK-NP---RRVVHMAARAGvRPS-----IDDPIIYVKSNVEATTVLLEMAAKYGSDSFVFASSSSVYGGS 140
                 799********************8887777777798677777777999999999**************9999988777.33...455566555552333.....34557899999*************99*****99998755444 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.5e-07   0.00034       1     130 [.       6     168 ..       6     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.5e-07
   PF13460.1   1 IaviGAtGktGrrivkellarghevtalv...........Rnps..klpe..ssgvtivkkDlfdledlaeala....gvdvvvdaf..garpe..d........regvkhlldalkaagvrrlvvvsaaglyrdkpgl.felldkplf..keylrakaaaeel 130
                 I+v+G  G +G+ ++++ll rg +v+ +            R  +  +l+e   +++++++++l+++e +++  +    + +vv  a+  g rp+  d        +e++  ll+++++ g   +v+ s+ ++y  + ++ f+ +d  +f   +y++ k+a e +
  MMETSP0890-20130614|7721_1   6 ILVTGVAGFIGSHVAEQLLLRGEDVVGIDemndyysvevkRA-NiaHLQElgGERFRFYQGNLCNKEFVENIWKieknPRRVVHMAAraGVRPSidDpiiyvksnVEATTVLLEMAAKYGSDSFVFASSSSVYGGSKKTvFGETDVVDFpvSPYAATKKACELI 168
                 9*************************9996666666665422.23467779889************877776656563566666666554444486255556667*****************************777766888888888877888777776644 PP

>> PF13950.1  UDP-glucose 4-epimerase C-term subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.5e-07   0.00075       2      43 ..     264     305 ..     263     320 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.5e-07
   PF13950.1   2 fekasgkkipyeiverRpGDvaecyAdpskAekeLgWkaers 43 
                 +eka+gkk  +e  +  pGDv+ ++Ad skA++ L++ ++  
  MMETSP0890-20130614|7721_1 264 VEKATGKKAIIERLPEQPGDVPRTCADISKARALLEYDPKTP 305
                 599**********************************99865 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-06     0.004       2     144 ..       5     141 ..       4     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.9e-06
                 -EEE----SHHHHHHHHHHHH-----EEEEE--..---------HHHHHH-.---EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC----EEEEEEEGGGT---- CS
   PF08659.5   2 tyLvtGGlgglGlelarwLaergarhlvllsrs.aapdeeaeallaeleal.gaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhelladepldffvlfSSiagvlgsa 144
                 + LvtG +g +G ++a++L+ rg   + +   +   + e ++a +a+l++l g + ++++ ++ +++ ve++ + +e++    r vvh+A+        + + +d    +++ v+++ +L e+ a+   d fv+ SS +   gs+
  MMETSP0890-20130614|7721_1   5 VILVTGVAGFIGSHVAEQLLLRGEDVVGIDEMNdYYSVEVKRANIAHLQELgGERFRFYQGNLCNKEFVENIWK-IEKNP---RRVVHMAARAG----VRPSIDDPIIYVKSNVEATTVLLEMAAKYGSDSFVFASSSSVYGGSK 141
                 579********************999998888834677777899******96679************9999875.56555...789**995444....44566778889999*********************999977666554 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00021      0.29       2      58 ..       7      76 ..       6      87 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
                EEE-.--HHHHHHHCCCHH.--..........EEEEES-HHHHHHHHH--...-EEEE--TTSHHHHHHT CS
  PF02254.13  2 iiiG.lGrvGrslaeeLre.ge........kdvvvidkdeerveelreeg...levvvgdatdeevLeea 58
                ++ G +G +G+++ae+L   ge        +d+  ++ +++++++l+e g   +++++g+  ++e++e++
  MMETSP0890-20130614|7721_1  7 LVTGvAGFIGSHVAEQLLLrGEdvvgidemNDYYSVEVKRANIAHLQELGgerFRFYQGNLCNKEFVENI 76
                66776899***********444444444443344444444556666666655566999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.90
# Mc/sec: 905.29
//
Query:       MMETSP0890-20130614|7724_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.49s 00:00:01.04 Elapsed: 00:00:00.57
# Mc/sec: 1355.18
//
Query:       MMETSP0890-20130614|7722_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-44  153.2   0.1    1.2e-44  153.0   0.1    1.0  1  PF03747.9  ADP-ribosylglycohydrolase
     0.0052   16.2   0.0     0.0074   15.7   0.0    1.2  1  PF12706.2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
       0.14   11.6   3.8         11    5.5   0.0    2.8  3  PF13488.1  Glycine zipper
       0.43   10.1   3.0        3.7    7.1   0.0    2.3  2  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
        1.4    8.4   7.5        3.1    7.2   0.0    2.7  3  PF13441.1  YMGG-like Gly-zipper


Domain annotation for each model (and alignments):
>> PF03747.9  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0   0.1   4.6e-48   1.2e-44       1     282 [.      22     329 ..      22     331 .] 0.83

  Alignments for each domain:
  == domain 1    score: 153.0 bits;  conditional E-value: 4.6e-48
                 --------------TTTT--HH.......HHHHH-----S--S--STT----------HHHHHHHHHHHCHH...-H-HHHHHHHHHHHHHC....T--S----HHHHHHHHCHH--.............--B---GCC-CCHHHCCTS.THCCHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHTT--CCHHHHCH...HHHHCCT-HHHHHHHHHHHG---HCH....................HHHH-----BHHHHHHHHHHHHHH.......-SSS----HHHHT----CCCHHHH----------- CS
   PF03747.9   1 gallGlavGDAlGlpvefwsyd.......rirraygeggeeggigggghggkkagdwtddtqmalllaesllengeldeedfaarllarWletpgdtaprdiGsttraalrnlesgepaaeagaqa..ansagnGalmRiaplglvlag.dpeellelareaarlTHgdpravaaavayaaliaallrgkslsealdaa.keqlataeadeelseeleaaralaesdr...............vdaeeelgrlgsggyvvealpaalyallka......addfeeallaavnlGgDtdttaaiaGallGalyGv 282
                 ga+lG++vGDA G+p+e+ + +       ++  ++g++   g   g  +g  + g +tdd+ ++l+la+++++ +e++++ +a+  l  ++      ++r + s+t ++++ +++  + +  g+ +  ++s +nG+++++apl+l+ a+ d+ el +++++a   TH +p a+a+a++++a+i++l++ +++s a  a  +    + + ++e+ ++l  ++++ e ++                 ++e +g+ g  + +  a+paa++a+l++       +++   l++av +GgDtdt+aa++GallGal+G+
  MMETSP0890-20130614|7722_1  22 GAMLGTLVGDAFGAPFEGRTSKsirdgstDLAGRLGYYC--GAHMGDPNGEIRQGMYTDDSNQMLALAQAIIKEHEINPKTIAQCSLNMYQI----NKQRFYPSSTIKVFEAIKNNVSIEDLGTINyaEGSYANGGAVKMAPLALFSANlDDSELDDMIKQALLPTHVHPDAIAGAKIMVAAIRYLINCENESFAPIAFlEHLIHLSKDNQEIYRRLITIKNFIENHPnrwasvpyglrkqpeGATREIYGEMGFQIEAFVAVPAAIWAFLSHqmmndqIKNPGYSLRQAVVIGGDTDTIAAMTGALLGALHGT 329
                 8*****************555512234445555555555..4444444444555555***************98888999999998888888....788999999999999998866555555444669******************999****************************************99999999974555666666777777777777777777777799999999999999999999999*****************9999888778*******************************7 PP

>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0074      29     154 ..     174     327 ..     144     331 .] 0.66

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.7e-06
                 T--EEE-S---GGG.S-....HHHHHHS-T...EEESSHHHHHHHH...H---..................-..................-EEE-SSEEE--.------HHHHS....HH.....--EEE..S--EEE-----S-HHHHHH.SEEEEE CS
   PF12706.2  29 ridavlisHaHaDHilgldslletikrlnk...pvygplgvaeflrek.kagikalepefdkkraieidkek..................kieegdwwitav.paqHgsgrygl....nk.....gfvletegkkvyysgDtgydfkeikgadllile 154
                    a+l +H H D i g + + ++i++l +     ++p ++ e+l +  k++ +  +     k++ie+++++                   + e++++i+a+  ++   ++ +     n      g+ l++    v++ gDt   ++++ ga l  l+
  MMETSP0890-20130614|7722_1 174 IKQALLPTHVHPDAIAGAKIMVAAIRYLINcenESFAPIAFLEHLIHLsKDNQEIYRRLITIKNFIENHPNRwasvpyglrkqpegatreIYGEMGFQIEAFvAVPAAIWAFLShqmmNDqiknpGYSLRQ---AVVIGGDTDT-IAAMTGALLGALH 327
                 5578999*******************************999998887773333333334444444444444444444444444444444466666666999845555544444245542267666699994...8*******87.5566665555555 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0042        11       6      19 ..      22      35 ..      17      45 .. 0.58
   2 ?   -3.4   0.0       2.6   7.1e+03      34      43 ..      56      65 ..      54      67 .. 0.69
   3 ?    5.5   0.6    0.0042        12       5      18 ..     315     328 ..     306     330 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0042
   PF13488.1  6 GAaaGAaiGaaagg 19
                GA +G ++G a+g 
  MMETSP0890-20130614|7722_1 22 GAMLGTLVGDAFGA 35
                44444444444443 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.6
   PF13488.1 34 aGaliGaymd 43
                +G+  Ga+m+
  MMETSP0890-20130614|7722_1 56 LGYYCGAHMG 65
                5677777775 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0042
   PF13488.1   5 iGAaaGAaiGaaag 18 
                 i A +GA++Ga +g
  MMETSP0890-20130614|7722_1 315 IAAMTGALLGALHG 328
                 33334444444333 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0013       3.7      44      74 ..      11      41 ..       1      85 [. 0.59
   2 ?    2.8   0.5     0.029        79      75      93 ..     311     329 ..     303     330 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0013
   PF13436.1 44 kaqeaaesaaegaavGaavGAaagaaaggag 74
                 + +  ++   ga++G++vG a+ga ++g++
  MMETSP0890-20130614|7722_1 11 ISHDDVQDRFRGAMLGTLVGDAFGAPFEGRT 41
                4445556666677777777777777555522 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.029
   PF13436.1  75 agaaiGAaaGllvGaaaGa 93 
                 +   i+A +G+l+Ga+ G+
  MMETSP0890-20130614|7722_1 311 DTDTIAAMTGALLGALHGT 329
                 5556777788888887775 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0011       3.1       9      24 ..      21      35 ..      18      48 .. 0.85
   2 ?   -3.9   0.2       3.5   9.5e+03      11      15 ..     187     191 ..     187     193 .. 0.51
   3 ?    4.6   0.7    0.0077        21      31      42 ..     316     327 ..     306     330 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0011
                XXXXXXXXXXXXXXXX CS
   PF13441.1  9 iGAaaGAaiGaaaGgg 24
                +GA +G ++G+a+G +
  MMETSP0890-20130614|7722_1 21 RGAMLGTLVGDAFG-A 35
                59999999999999.4 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.5
                 XXXXX CS
   PF13441.1  11 AaaGA 15 
                 A+aGA
  MMETSP0890-20130614|7722_1 187 AIAGA 191
                 45555 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0077
                 ----------TT CS
   PF13441.1  31 GAaaGalaGgaa 42 
                  A +Gal G++ 
  MMETSP0890-20130614|7722_1 316 AAMTGALLGALH 327
                 333344433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.89
# Mc/sec: 891.23
//
Query:       MMETSP0890-20130614|7723_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   51.0   0.0    3.1e-13   49.5   0.0    1.8  1  PF02798.15 Glutathione S-transferase, N-terminal domain
      4e-05   23.3   0.2    6.6e-05   22.7   0.1    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    7.5e-05   22.4   0.0    0.00017   21.2   0.0    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    0.00012   21.8   0.0    0.00023   20.9   0.0    1.4  1  PF13409.1  Glutathione S-transferase, N-terminal domain
     0.0002   21.4   0.0    0.00045   20.2   0.0    1.6  1  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.15   11.5   1.0       0.53    9.8   0.5    2.0  2  PF12512.3  Protein of unknown function (DUF3717)


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.4e-16   3.1e-13       1      76 []      32     119 ..      32     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.4e-16
                 EEEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHH......HHHHHHCTTT......S-SSEEEETTTEEEESHHHHHHHHHH CS
  PF02798.15   1 stltlfnhrgraeslrillaekgveyeivrvdfeagegks......pewlklnpki......grvPaledgdglklteSlAIarYlar 76 
                 ++lt+f+ rg ae+ r+lla +gv+ye++r +f++g   +      pe+ +++         g+vP le +dg+ + +S  I rY+a+
  MMETSP0890-20130614|7723_1  32 MKLTYFDLRGVAERSRYLLAIAGVDYEDERFSFKFGTPGDfstiirPEFDQAKASGrldislGKVPLLETDDGKIIPQSKSIERYIAK 119
                 68*******************************88765333233446666666555******************************95 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.9e-08   6.6e-05      19      74 ..     152     207 ..     115     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.9e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.TSSSSSSSS-BHHHHHHHHHHHHHHHHTT CS
  PF00043.20  19 aekdeaeveeakrkvlevlealeeels.gkkylvGdkltlADialfpalewlqrldg 74 
                 + kd+ + e   + + e l+ +e+ ls    +l G+k+ lAD++++ +l +++  + 
  MMETSP0890-20130614|7723_1 152 KAKDQ-ANEYLTTTLPETLQKVEKSLSkSGPFLNGEKVCLADVCFYYFLTQFFDDKE 207
                 45666.999999***************99*******************998776655 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.5e-08   0.00017      10      53 ..     164     208 ..     131     225 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 7.5e-08
                 GTT-THGGG------SS..-------HHHHHHHHHHHHHHHHH-- CS
   PF13410.1  10 qlraaLdaleahLadgp.fllGdrpslaDialapflvrldaagpg 53 
                 +l + L ++e+ L +++ fl G++ +laD++++ fl ++  ++  
  MMETSP0890-20130614|7723_1 164 TLPETLQKVEKSLSKSGpFLNGEKVCLADVCFYYFLTQFFDDKEA 208
                 466889999**9999999******************999777655 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     1e-07   0.00023       5      69 ..      43     119 ..      41     120 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1e-07
                 HHHHHHHHHH----EEEEEE.H....TTSHHHHH........HHH----.......--SEEE.----EEESHHHHHHHHHH CS
   PF13409.1   5 ahRvlialalkgledeisvv.plepkgfekseel........lalsprg.......tVPvLwdkdgtvineSseIlrylne 69 
                 a+R + +la +g+++e + +       f ++ ++         +++ +g       +VP+L+++dg++i  S  I ry+++
  MMETSP0890-20130614|7723_1  43 AERSRYLLAIAGVDYEDERFsFK----FGTPGDFstiirpefDQAKASGrldislgKVPLLETDDGKIIPQSKSIERYIAK 119
                 899*************8886322....22222333333333344443335577777**********************986 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     2e-07   0.00045      10      72 ..      43     122 ..      34     130 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2e-07
                 HHHHHHHHHH----EEE----.....TTTT....HHHH....HHH-.....TT--SSEEE.----EEESHHHHHHHHHHH-- CS
   PF13417.1  10 arkvrlaLeekglpyelvevt.....pgkk....rpel....laln.....pkgkvPvLe.ddgevltdSlvIieyLeerfp 72 
                 a++ r +L  +g++ye +        pg+     rpe+    +  +      +gkvP Le ddg+++ +S +I +y+ ++++
  MMETSP0890-20130614|7723_1  43 AERSRYLLAIAGVDYEDERFSfkfgtPGDFstiiRPEFdqakA--SgrldiSLGKVPLLEtDDGKIIPQSKSIERYIAKKYG 122
                 5677788888888877765543332322212333444433220..12334589******8466**************99987 PP

>> PF12512.3  Protein of unknown function (DUF3717)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00023      0.53      34      69 ..     115     150 ..     110     152 .. 0.91
   2 ?   -1.8   0.0      0.95   2.2e+03      20      39 ..     175     193 ..     173     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00023
   PF12512.3  34 raLAevYAlmivqresevdlasLsakaraAleawld 69 
                 r  A+ Y++m  + e+ + ++ L +++r+A +a+ +
  MMETSP0890-20130614|7723_1 115 RYIAKKYGMMGATDEEAAYIDALAEHQRDAQDAYKA 150
                 6789**************************999765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.95
   PF12512.3  20 sPssgdelaLcaearaLAev 39 
                 s s + ++ L+ e  +LA+v
  MMETSP0890-20130614|7723_1 175 SLS-KSGPFLNGEKVCLADV 193
                 555.7788999999****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       709  (0.0518578); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.47s 00:00:01.03 Elapsed: 00:00:00.76
# Mc/sec: 769.36
//
Query:       MMETSP0890-20130614|7725_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:00.72
# Mc/sec: 1684.11
//
Query:       MMETSP0890-20130614|7726_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.92
# Mc/sec: 1359.67
//
Query:       MMETSP0890-20130614|7714_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.5   0.0     0.0019   17.7   0.0    1.5  1  PF00564.19 PB1 domain


Domain annotation for each model (and alignments):
>> PF00564.19  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.4e-07    0.0019       2      66 ..      47     108 ..      46     118 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.4e-07
                 EEEEEEETTEEEEEEEETSSS-HHHHHHHHHHHCTB-GSSEEEEEEETTCSEEEE-SHHHHHHHH CS
  PF00564.19   2 vklKlrykgdirrilsvssnisfeeLrskveqrfklsdedvklkYpdedgdlvtitsdeDLkeav 66 
                 v lKl+ +g+ir  + ++++++ e+  ++ ++ fk s  d+++++p+ d + ++i+s++DL+ a 
  MMETSP0890-20130614|7714_1  47 VVLKLEWNGEIRL-AELDHPVKVEDIKKLFKNLFKVS-PDLTYCLPG-DFESISIKSEADLELAQ 108
                 679**********.**********************8.*******98.5679**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       546  (0.0399356); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.93
# Mc/sec: 1038.42
//
Query:       MMETSP0890-20130614|7728_1  [L=1234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-10   39.6   0.3    9.1e-10   38.3   0.2    1.7  1  PF00538.14 linker histone H1 and H5 family
    1.1e-06   28.2   0.2    1.5e-05   24.6   0.1    2.6  2  PF00855.12 PWWP domain


Domain annotation for each model (and alignments):
>> PF00538.14  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.2   1.3e-13   9.1e-10       1      76 [.     161     232 ..     161     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.3e-13
                 SS--HHHHHHHHHCCTTT...T----HHHHHHHHHCCTTTS--STTHHHHHHHHHHHHHH---EE---..------EES CS
  PF00538.14   1 shppyseMiveaikalke...rkGsSvqaikKyieanykveinasnlasllklaLkkgvksGeLvqvkgtGasGsfkla 76 
                 shp+y+eMi  a+++l     ++G S++ i+ +i++ny+v+ ++   ++  ++a+k+g+k+G +v++k     +s++l+
  MMETSP0890-20130614|7728_1 161 SHPSYAEMICRALSELIKkgsKSGVSAIRISQWIKTNYTVHPTK--YKVSVNTAIKQGIKQGRFVKIK-----NSYRLS 232
                 7************9985412268***************866666..**********************.....999997 PP

>> PF00855.12  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.089   6.1e+02       2      29 ..      48      74 ..      47     117 .. 0.74
   2 !   24.6   0.1   2.2e-09   1.5e-05       7      61 ..    1107    1162 ..    1103    1167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.089
                -----EEEE-B---BSEEEEEE-GCCTS CS
  PF00855.12  2 fkigdlVlaKvkgfpwWPArvvsqketp 29
                +++g  Vl+K +g  w PA v+++    
  MMETSP0890-20130614|7728_1 48 YGVGAEVLCKKNG-VWYPAIVMNRTYRM 74
                6677789999888.699*****987654 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 2.2e-09
                  EEEE-B---BSEEEEEE-GCCTSSSS...-SS-EEEEE----EEEEE-GCCEEEHH CS
  PF00855.12    7 lVlaKvkgfpwWPArvvsqketptsvr.rksnkvkVlFfgdhktawvskkklkpld 61  
                   V+a ++g+pwWPAr +  k+    +  +  n     F++++ ++++++++++p +
  MMETSP0890-20130614|7728_1 1107 FVWARIRGYPWWPAREYIPKSPHFAQAlERRNHKLLVFVNESVMYLIDSNSVEPFT 1162
                  6*************977666664444478888888889**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       711  (0.0520041); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.63u 0.36s 00:00:01.98 Elapsed: 00:00:01.55
# Mc/sec: 1907.81
//
Query:       MMETSP0890-20130614|7731_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-74  250.4   0.0    2.5e-74  250.0   0.0    1.1  1  PF00501.23 AMP-binding enzyme
     0.0013   18.0   0.7     0.0034   16.6   0.5    1.6  1  PF13193.1  Domain of unknown function (DUF4009)


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   0.0   3.6e-78   2.5e-74       1     408 [.      35     476 ..      35     480 .. 0.92

  Alignments for each domain:
  == domain 1    score: 250.0 bits;  conditional E-value: 3.6e-78
                 EHHHHHHHHHHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-H.......HHHHHHHHHHTESEEEEESBT-CCCHHHHHHHHHHHCTTCTTECCS-EECCCCCCECSCCGGGTSTSS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-.TTCCHHCTTTHHHHTTT-EEEEESSCCT.T-HHHHHHHHHHCT-SEEE--HHHHHHHHHHCHC.CCTTTTT--EEEE-----THHHHHHHHHHTT......SEEEEEE--CGGSSESEECCS-HHH...................CCH---EBSTTTEEEEEBSTT.-BEE-....S----EEEESTTS--B-TT-HHHHHHHBCCSTT.......EEE---EEEE-TT--EEEE--GGGEEE----EEEHHHHHHHHH CS
  PF00501.23   1 TYreldervnrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpa.......erlayilndseakvlitddelltklleaaskelakekliivrtdkeedsvgeeellleleelkkesteapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllp.lhfdgsilellaplllGatvvlvspedl.kdpalllddiekykvtvlalvptvlelllkaiek.kkldlsslrlilsggeplspellerlreafg.....girivngYGltEttgvvtvslpgdee..................tkpgsiGrplpgvevkivdeeg.kevpp....gevGEllirgpgvakGYlkdpeltaeafdedgw.......lyrTGDlgrldedGyleiiGRkkdqikirGeniepgeiEsall 408
                 TY+++ +r+ ++a  L +    +++ V +++++++ ++ af++c  aG ++vp yp++p+       ++   i++ ++akv++t++++  +++ a+ ++l+ + +           +  +++  + +e+k++s  ++  +l  +++a+++yTSG+T  PKGV++t+++ll+++  i++ ++ +++  v+s+lp +h +g+i+  l++ ++G+  +++sp+++ k p+ +l++++++k t+++++++++ l +++ ++ ++l+lss+r+i++g+ep+ +++++++ ++f+      ++++++YGl+E+t++vt++                         + + +G+p+p + ++iv e + +++++    g vGE+++ +++v  GY++ +elt+++f +          ++rTGD g+++e ++l+++GR+kd+i++rG+n++p+++E  + 
  MMETSP0890-20130614|7731_1  35 TYEQVLTRAHKIAIQLENVQT-EESPVLLVFEPGLLFICAFFGCGLAGKIAVPCYPPDPRrrgraevHAFVSIQAGCGAKVALTSSAYNWAKKTADLALLDLRGKRW--------PQELKWIIATSDEDKEKSIIQH-ISLPTNQIAFLQYTSGSTSDPKGVIVTQKSLLHNLNLIIRELNADSNTIVVSWLPmYHDMGLIGSYLGACYCGGSGFYTSPFNFvKRPQIWLEALSQFKGTHTQAPNFAFALTVRKFQQnNQLNLSSIRHIINGAEPVEAQAMDQFIKTFEplglnSNVLFPTYGLAESTVMVTTNGRARLCidvealveekrvvkadhgPQIMGCGKPVPEMIIRIVRETSdQQFQDvtdrGLVGEIWVCSESVSAGYWGLDELTQATFGAILAneetarkFLRTGDEGFIHE-DELFVCGRIKDLIILRGKNYYPQDLERTVE 476
                 9*****************999.66************************************999988888999*************************9998865544........2333444444444444444333.34469**************************************************9**********************************************************999988********************************************************99999999**********************************99988777653333667*************************88888999****************.**************************9875 PP

>> PF13193.1  Domain of unknown function (DUF4009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5     5e-07    0.0034       6      24 ..     532     552 ..     530     557 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5e-07
   PF13193.1   6 eveFVde..LPKTrSGKIlRR 24 
                 +++F ++  +PKT SGKI RR
  MMETSP0890-20130614|7731_1 532 RIVFIKArtIPKTTSGKIARR 552
                 789999999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:01.38
# Mc/sec: 1232.91
//
Query:       MMETSP0890-20130614|7733_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.92
# Mc/sec: 270.89
//
Query:       MMETSP0890-20130614|7735_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   16.9   0.0       0.01   15.2   0.0    1.9  1  PF01465.15 GRIP domain
  ------ inclusion threshold ------
       0.76    9.2  67.4      0.038   13.4   5.1    4.7  6  PF04156.9  IncA protein
        5.8    5.8  25.5        2.1    7.3   0.2    3.9  4  PF04582.7  Reovirus sigma C capsid protein
        6.5    6.0  54.3       0.79    9.0   4.0    4.9  4  PF13870.1  Domain of unknown function (DUF4201)
        8.4    5.4  62.0        3.8    6.5   7.7    4.5  5  PF13851.1  Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.8e-06      0.01      17      41 ..     383     406 ..     374     409 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.8e-06
  PF01465.15  17 eqkesngreqllpVistlLkFseee 41 
                 ++k+  +r +++pV++ lL+Fs++e
  MMETSP0890-20130614|7735_1 383 TSKD-AQRHATVPVLGRLLEFSDDE 406
                 4666.89999************998 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8  15.0      0.66   1.8e+03      69     181 ..       4     121 ..       1     129 [. 0.68
   2 ?    1.4   9.8     0.068   1.9e+02      87     155 ..     104     172 ..      95     180 .. 0.83
   3 ?    6.0  10.5    0.0026       7.2      84     173 ..     136     229 ..     135     234 .. 0.89
   4 ?    3.6   9.9     0.014        40      84     187 ..     168     272 ..     162     276 .. 0.81
   5 ?    3.3   0.7     0.017        47     106     150 ..     240     284 ..     232     291 .. 0.79
   6 ?   13.4   5.1   1.4e-05     0.038      99     170 ..     289     360 ..     283     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.66
   PF04156.9  69 eedekieesrlqeelsesesqlseleeeleqleerlaeleseledleedlellq.eelksleerlesleesikelakeirelr...eeisdlkeevqelrselerl.qedlqrlqekl 181
                 ++de+i+  r+++e+s++++ l+ +e++ ++l ++++e e+e+ d + ++e++  + +++le+ +   ++ i+++ + i       e+ + + e++++++s++ ++ ++++ + +e+l
  MMETSP0890-20130614|7735_1   4 SRDEEIRILRAKLEQSDQSDALQTAETKAQELAQKFEEREKEFIDMKIQFEEKVaTSESKLEDLIVHSRQTISRMKQNIDSHKadaEKYRMQAEHIEKEKSTIIHEaERNRCEWEEQL 121
                 6778888888999999999999999999999999999999999999999999995555555555555555555555544444466666666667777777777777544444555555 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.068
   PF04156.9  87 esqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisd 155
                 ++++ e+e+   + ee+la+l  ele+++++l +l++ +++ e+++ sl+ s++e+ + ++++ ++ ++
  MMETSP0890-20130614|7735_1 104 STIIHEAERNRCEWEEQLAALNLELELVRSQLADLKTKEQESETKINSLSTSYEETKAALARQKKSAEE 172
                 556667777777889****************************************99999998844443 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0026
   PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellq....eelksleerlesleesikelakeirelreeisdlkeevqelrselerlqed 173
                 +++++  +e e+++  l++  +e+++ l  +++  e+++    e+  +++++les+  ++  + +e++e+ + +s+++ee++ lr+el++lqe 
  MMETSP0890-20130614|7735_1 136 ADLKTKEQESETKINSLSTSYEETKAALARQKKSAEEEEnwyrEDALKVRAQLESAHADLNTIKSEYAEIKNILSKKREEADILRHELSELQEK 229
                 5778888899999999888888888888888888888888888************************************************875 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.014
   PF04156.9  84 sesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr.eeisdlkeevqelrselerlqedlqrlqeklaelqrl 187
                 +++e++ + + e   +++ +l++ +++l+ +++++ +++  l++++e+ + l+++++el+++ +  r  ++ +  +++++lrs+l++ q +++ +q +l  l+++
  MMETSP0890-20130614|7735_1 168 KSAEEEENWYREDALKVRAQLESAHADLNTIKSEYAEIKNILSKKREEADILRHELSELQEKAALGRnHALTENARSLDDLRSQLTAAQVARTSAQDALDLLKAE 272
                 555666666666777788899999999999999999999999999999999999999999999999988899999999999999999988888888887766665 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.017
   PF04156.9 106 eleseledleedlellqeelksleerlesleesikelakeirelr 150
                 e+ + l+dl+++l+ +q +++s ++ l+ l+ + ++l +e +   
  MMETSP0890-20130614|7735_1 240 ENARSLDDLRSQLTAAQVARTSAQDALDLLKAENDRLVAEAHHAN 284
                 566778999999999999999999999999999999988877655 PP

  == domain 6    score: 13.4 bits;  conditional E-value: 1.4e-05
   PF04156.9  99 qleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl 170
                 q e+rla+l++eled++++   +++    +++rl++le s ++l+k+ + +r+  s  ++ev   +++ e++
  MMETSP0890-20130614|7735_1 289 QRENRLAALTEELEDVKKQSIADRKRADLVQSRLKDLETSTQALRKSASTVRKHFSVMQSEVMSAKQQSEHN 360
                 6799************************************************88888888888888877776 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.6      0.02        55      58     128 ..      18      89 ..       4      99 .. 0.77
   2 ?    5.9   0.9    0.0021       5.6      69     122 ..     118     171 ..     101     194 .. 0.81
   3 ?    5.6   6.1    0.0024       6.6      24     157 ..     196     330 ..     181     339 .. 0.78
   4 ?    7.3   0.2   0.00076       2.1      33      66 ..     318     351 ..     308     364 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.02
   PF04582.7  58 lsdlsadlqdvtsslddvkaelkelstevaalqssvd.slsseladlselvsahdaalsslqtevdanstdi 128
                  sd s +lq   +  +++  +++e ++e   ++   + +++++ ++l +l+    +++s +++++d+  +d 
  MMETSP0890-20130614|7735_1  18 QSDQSDALQTAETKAQELAQKFEEREKEFIDMKIQFEeKVATSESKLEDLIVHSRQTISRMKQNIDSHKADA 89 
                 578888899888888899999999888888777666514556677788888888899*******99988775 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0021
   PF04582.7  69 tsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevd 122
                  + l+ ++ el+ +++++a l++  +++ +++++ls+  ++ +aal+  +++ +
  MMETSP0890-20130614|7735_1 118 EEQLAALNLELELVRSQLADLKTKEQESETKINSLSTSYEETKAALARQKKSAE 171
                 566778888899999999999999999999999999999999999988777654 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0024
   PF04582.7  24 tinpGdltavyerltaleaataslsesvssisskls.dlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqt.evdanstdisnlksdvsanglnitdleervkslesgss 157
                 ++ + + +++++ l++    ++ l++ +s++ +k +   + +l + ++sldd++++l+  +   ++ q+++d l +e   l   ++ h++ ls+ ++    a++ ++ ++k +  a       +++r+k+le+++ 
  MMETSP0890-20130614|7735_1 196 NTIKSEYAEIKNILSKKREEADILRHELSELQEKAAlGRNHALTENARSLDDLRSQLTAAQVARTSAQDALDLLKAENDRLVAEAH-HANRLSKQREnRLAALTEELEDVKKQSIADRKRADLVQSRLKDLETSTQ 330
                 45556667777777777777888888888887776524577899*******************************99998877655.666777766515788999999999988888777777799******8875 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.00076
   PF04582.7  33 vyerltaleaataslsesvssissklsdlsadlq 66 
                 v+ rl +le++t++l++s s++ ++ s +++++ 
  MMETSP0890-20130614|7735_1 318 VQSRLKDLETSTQALRKSASTVRKHFSVMQSEVM 351
                 789********************99998888765 PP

>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  14.5    0.0024       6.5      45     175 ..      26     156 ..       2     158 .. 0.88
   2 ?    3.3   5.2     0.016        43      95     163 ..     102     172 ..     101     175 .. 0.84
   3 ?    9.0   4.0   0.00029      0.79      82     145 ..     177     240 ..     172     255 .. 0.88
   4 ?   -2.0   6.9      0.66   1.8e+03      91     133 ..     278     320 ..     239     363 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0024
   PF13870.1  45 eqlqienqalnekieernkeLkkLkkkttktvhalthlkeklh.fleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqqggllrkPaLlkDydktvekveekrksveklrrkvkilemri 175
                 ++++++ q+l +k+eer+ke + +k +   +v +     e l    +++++++k+++++ +++ +k+r++ +++++e++ +  e ++ r + ++    aL  + +  ++++++++ + ++ + k+++l+ ++
  MMETSP0890-20130614|7735_1  26 QTAETKAQELAQKFEEREKEFIDMKIQFEEKVATSESKLEDLIvHSRQTISRMKQNIDSHKADAEKYRMQAEHIEKEKSTIIHEAERNRCEWEE-QLAALNLELELVRSQLADLKTKEQESETKINSLSTSY 156
                 5678899*************************998887777774677889********************************999998888887.6677888889999999999999999999999888776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.016
   PF13870.1  95 elkkelkekeeklaklrkelykvklerdklrkenkklrq..qggllrkPaLlkDydktvekveekrksvek 163
                 e+ +++ e e+++ + +++l  ++le + +r + ++l++  q  + + ++L + y++t++ ++  +ks e+
  MMETSP0890-20130614|7735_1 102 EKSTIIHEAERNRCEWEEQLAALNLELELVRSQLADLKTkeQESETKINSLSTSYEETKAALARQKKSAEE 172
                 5678899999999999*****************9997761155667889************9999998775 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00029
   PF13870.1  82 lkeklhfleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqqggllrkPaLlk 145
                 ++e +  ++++le ++ +l++++ + a+++  l+k ++e d lr e ++l+++ +l r+ aL +
  MMETSP0890-20130614|7735_1 177 YREDALKVRAQLESAHADLNTIKSEYAEIKNILSKKREEADILRHELSELQEKAALGRNHALTE 240
                 7899999999******************************************999988888876 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.66
   PF13870.1  91 eeleelkkelkekeeklaklrkelykvklerdklrkenkklrq 133
                 +e ++++   k++e++la l +el+ vk++    rk+ + +++
  MMETSP0890-20130614|7735_1 278 AEAHHANRLSKQRENRLAALTEELEDVKKQSIADRKRADLVQS 320
                 3333333333344444444444444444432222222222222 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   4.4    0.0076        21      90     138 ..      13      61 ..       3      67 .. 0.61
   2 ?    3.0  11.5     0.016        45      27     118 ..      73     165 ..      66     181 .. 0.76
   3 ?    3.4  12.4     0.012        34      32     129 ..     131     229 ..     119     232 .. 0.90
   4 ?    6.5   7.7    0.0014       3.8      33     132 ..     178     282 ..     175     292 .. 0.81
   5 ?    5.5   8.7    0.0028       7.6      44     132 ..     271     359 ..     235     378 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0076
   PF13851.1  90 nlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvq 138
                 ++k +  ++ + l++ + + + l q+fe+ e+E  +++ +fe+++   +
  MMETSP0890-20130614|7735_1  13 RAKLEQSDQSDALQTAETKAQELAQKFEEREKEFIDMKIQFEEKVATSE 61 
                 3445555556666677777777777777777777777777776665544 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.016
   PF13851.1  27 elIkslkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeevee.LkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfek 118
                 ++I  +k++i ++k+ +ek + +++ i+ke++ +  + ++ + e ee L     + e  +++L+ lk+k +e+e ++++l+  +e  +  +++
  MMETSP0890-20130614|7735_1  73 QTISRMKQNIDSHKADAEKYRMQAEHIEKEKSTIIHEAERNRCEWEEqLAALNLELELVRSQLADLKTKEQESETKINSLSTSYEETKAALAR 165
                 579999999999999999999999999999999887777776665541333334567788999999999999999999999998887765543 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.012
   PF13851.1  32 lkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkk.klkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykk 129
                 +++++a+lk+ke+++e +++++++ +++ k+ L+++++  ee ++   +++ k +++L++++a l++ + e+ ++k   + +++  + +  E  el++k
  MMETSP0890-20130614|7735_1 131 VRSQLADLKTKEQESETKINSLSTSYEETKAALARQKKSAEEEENwYREDALKVRAQLESAHADLNTIKSEYAEIKNILSKKREEADILRHELSELQEK 229
                 6789********************************9999887772467899999***********************999999999999999999988 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0014
   PF13851.1  33 keeiaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekd.....kqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfea 132
                 +e+  +++++ e+   +++ ik e+ ++k+ L k +ee + L+++l++ +++     + +L++  ++l++l+ +l++ + +  + ++ ++ ++ E d+l ++ ++
  MMETSP0890-20130614|7735_1 178 REDALKVRAQLESAHADLNTIKSEYAEIKNILSKKREEADILRHELSELQEKaalgrNHALTENARSLDDLRSQLTAAQVARTSAQDALDLLKAENDRLVAEAHH 282
                 78888999**************************************99876522222457777778888888888888888888888888888888888776655 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0028
   PF13851.1  44 ekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfea 132
                 ++n++l+ae    n+  k+  +++ +  eeL+   kq   d++    ++++lk+le   ++l++  ++ +++f+ +++E  + +++ e+
  MMETSP0890-20130614|7735_1 271 AENDRLVAEAHHANRLSKQRENRLAALTEELEDVKKQSIADRKRADLVQSRLKDLETSTQALRKSASTVRKHFSVMQSEVMSAKQQSEH 359
                 45666666666666666666666666677888888888889999999*********************************999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2439  (0.178394); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                        54  (0.00394968); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.55u 0.43s 00:00:02.98 Elapsed: 00:00:01.72
# Mc/sec: 594.91
//
Query:       MMETSP0890-20130614|7734_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-14   53.5   0.6      1e-13   50.7   0.4    2.1  1  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.4   7.4e-18     1e-13       9      99 ..      54     169 ..      49     171 .. 0.93

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 7.4e-18
  PF02225.17   9 plvsagygisegsckdddlaksdvkGkIvlvrrgvctfsekaevaqeaGAkgviiin.............................pseaalpggtkvgpsdvgiPvvvisradgealla 99 
                 +lv    +  +  ++    ++++v+ +Iv++ rg+ctf+ ka +a++aGA+++i+in                               + ++ +++  +p  +++P+v+is+a+g++l++
  MMETSP0890-20130614|7734_1  54 ELV----TANPRQGCEPLTNARSVATQIVIMVRGGCTFGVKATNAAKAGAAALIVINndrrspdrsfamafsatgemnqkekerrsIGGGDDKSSDIIDPAVASMPSVMISYAAGQQLRE 169
                 566....666778899999***************************************************************9999999999999999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.79
# Mc/sec: 1483.31
//
Query:       MMETSP0890-20130614|7736_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-27   96.3   0.0    2.5e-27   95.9   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   1.8e-31   2.5e-27       4     155 ..      42     216 ..      39     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 1.8e-31
                 XXXXXXXXXXX.XXXXXX.---.........-TTTTT--------TTT------------------S--TT--.....STT--.....---......--S-TT.THHHH---HHHHHHHHTT---------------.............---------..-----------STTT----TTTTT------- CS
  PF00504.16   4 eldgslpgdlg.fDplglskdp.........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa....waeag.....gls......lptllalqillligflelareqelkapesegsekraypGg.............lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  l  +l++ +g +Dplgl+ d+         t+ +lr+aE++HGR+AM+a+lG+ v+   t++      +++p+    +   g     + +      +p ++ lqi++lig+le +   e+  p  + ++k ++pG              ++ dp+g++  ++eeeka   +kEi+nGRlAM+++++++ +a
  MMETSP0890-20130614|7736_1  42 SLATELNPIIGfWDPLGLA-DAsfwslgnegTIGYLRHAEIKHGRIAMAAFLGYWVQS--TDF------VSGPHkilpYK--GyepglT-PpeqwdaIPLAGKLQIFTLIGMLESY--GEIL-P--VHYTKGGQPGYyppikgnrpelvlNLYDPFGFNdnNTEEEKAAGLVKEINNGRLAMLGIFSLLSEA 216
                 6778899999********8.5559**********************************..442......22232222122..1222221.11233459999**************8..4442.2..33567888888888899999999988******999999**********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 866.92
//
Query:       MMETSP0890-20130614|7732_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:02.60
# Mc/sec: 371.44
//
Query:       MMETSP0890-20130614|7737_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-10   39.5   0.0    4.1e-10   39.2   0.0    1.1  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     3e-14   4.1e-10       2      59 ..      20      98 ..      19     117 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 3e-14
                BEHHHHHTCE..CTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHH....................HHHHHH CS
  PF00173.23  2 ftleevskhn..kekdswvvirgkVYDvskflkdhpggasailafaGkDaTeaf....................enashs 59
                ++ ee+ + n  ++ ++w++i+g+VYDvs+  +++ +g ++++++  kDaT+af                    +++  +
  MMETSP0890-20130614|7737_1 20 VSNEELMSANgeNGAPIWLSIKGRVYDVSSSPNFYGPG-RPYSKLVAKDATRAFglgcaaphclvsdieglserQLKEID 98
                57789999999999****************88888888.8**************99888888888877776666333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:01.11
# Mc/sec: 280.65
//
Query:       MMETSP0890-20130614|7738_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   12.6   0.0       0.07   12.3   0.0    1.1  1  PF00809.17 Pterin binding enzyme


Domain annotation for each model (and alignments):
>> PF00809.17  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.2e-06      0.07     129     194 ..      18      85 ..       2      97 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-06
                 -----SHHHHHHHHHHHHHHHHHC.HHHHHH....GGGE..EEETTTT.TTSTTHHHHHHHHHHHHHCS CS
  PF00809.17 129 ktmqeeleyevdvveellealeer.lealeeaGipperi..ilDpgigfgkteehnlellktldalrel 194
                 k  ++e++ + +  ee++e++ee+ l+ +e +G + + +  ilDp+i+f  +++    ++ ++++l+e 
  MMETSP0890-20130614|7738_1  18 KFLDHEITGN-ESPEEIVEKMEENaLSTAETSGSASDALapILDPLIFFLLQQQIGNRVIPNVEKLEEK 85 
                 4455566666.7778888888888889999***999888779*******999*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       755  (0.0552224); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:01.17
# Mc/sec: 253.97
//
Query:       MMETSP0890-20130614|7740_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-09   35.0   0.2      8e-09   34.4   0.1    1.2  1  PF02516.9  Oligosaccharyl transferase STT3 subunit
    4.3e-05   22.9   0.0     0.0001   21.7   0.0    1.7  1  PF00023.25 Ankyrin repeat
    0.00011   22.3   0.0    0.00035   20.7   0.0    1.9  1  PF12796.2  Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.46   10.7   0.0    2.1  2  PF13606.1  Ankyrin repeat
        5.8    4.5  29.0         12    3.5  17.4    2.0  2  PF04147.7  Nop14-like family
        7.5    4.9  12.4        3.5    6.0   0.1    2.2  2  PF04499.10 SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> PF02516.9  Oligosaccharyl transferase STT3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   3.5e-12     8e-09     477     559 ..     182     263 ..     155     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.5e-12
   PF02516.9 477 tfdGgsap.vvlgteraywaltamddsneaylslkiismlstsgvkswwdygnqilkvakrvvilnnilavnrskaasvltaky 559
                 +++G s p ++      ++   + dd++eay +l+ ++  + ++v++wwdyg+qi + a+r++i++ ++++  +++a+++    
  MMETSP0890-20130614|7740_1 182 LAEGMSQPsIMFRAHLRDGTPVMVDDYREAYWWLRDNTPHD-ARVMAWWDYGYQISGIANRTTIADGNTWNH-EHIATLGRCLT 263
                 5666666666666666667777899****************.******************************.99998876555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.5e-08    0.0001       1      32 [.     602     633 ..     602     634 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.5e-08
                 TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
  PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                 dG+ PL +A +++++e++ lL+s+GAd  a+d
  MMETSP0890-20130614|7740_1 602 DGRGPLWWAYEYDRPEIIDLLISKGADAEATD 633
                 7999***********************99987 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07   0.00035      31      88 ..     573     632 ..     540     643 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.6e-07
   PF12796.2  31 hlAaea.gnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnlr 88 
                 ++A+++ ++le+++  +++  +v     ++g+ pL +A ++ + e+++lL++kgad +++
  MMETSP0890-20130614|7740_1 573 MWALISqDRLETIEQWISYAPSVVKMRaADGRGPLWWAYEYDRPEIIDLLISKGADAEAT 632
                 555433144666666666665553333366666666666666666666666666665544 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.6   1.3e+04      10      24 ..     577     591 ..     573     594 .. 0.68
   2 ?   10.7   0.0    0.0002      0.46       1      28 [.     602     629 ..     602     631 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.6
   PF13606.1  10 asngrielveaLlen 24 
                 +s+ r+e +e  +++
  MMETSP0890-20130614|7740_1 577 ISQDRLETIEQWISY 591
                 456799999887765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0002
   PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                 +G+ pL +A ++ r+e++++L+++gad 
  MMETSP0890-20130614|7740_1 602 DGRGPLWWAYEYDRPEIIDLLISKGADA 629
                 6899999999****************95 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1    0.0089        20     378     423 ..      58      96 ..      40     192 .. 0.50
   2 ?    3.5  17.4    0.0052        12     292     396 ..     438     555 ..     420     579 .. 0.61

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0089
   PF04147.7 378 sddeeeeeeeeeaseeeaeakkkkkktkkkkksaeetkeelpftfp 423
                 +d+ + ++       +++++++++  +++k  ++e++k++ +   +
  MMETSP0890-20130614|7740_1  58 EDKASGNN-------KNNKKSTSTPLSNNKIDENEDKKRTTKAARK 96 
                 11111111.......1111111111111111111111111111111 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0052
   PF04147.7 292 lrRmrgeeeddeeeedse............kesaddlddefeedddenfglgsaeeeeeeee..eegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeeeaseeeae 396
                 ++Rm+g  ++  +++ s+              +add+d ++   ++++  + +++e+e  ++  e++ ++ +ee++d ++e + ed   ++e++de+ ee d ee + e+e+a++e+ +
  MMETSP0890-20130614|7740_1 438 MERMDGRHSSTTSKRGSKkkldeprpffdvPWEADDEDGSAAAAAKKAKAEAKKKEKEAAAAakENEQATANEEQIDVSSE-SVEDPPTEDEDDDEDFEEYDHEEAAREAEQAAQEALR 555
                 79****99999999998889999***9998888888888866333322222222222221111134445555555555555.6666666666666666666666666666663333322 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0015       3.5     268     325 ..      48     108 ..      38     196 .. 0.65
   2 ?    1.2   5.4     0.042        96     263     319 ..     485     541 ..     414     599 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0015
  PF04499.10 268 eseeeaedtsadae...qdsaedkreleasnasedseeededdeeseeseeseesaaelte 325
                 +++++++dt+ d++   ++++++++++  sn+++d++e+++ + + +++  s +sa+ +++
  MMETSP0890-20130614|7740_1  48 DKTTTNADTTEDKAsgnNKNNKKSTSTPLSNNKIDENEDKKRTTKAARKPPSVTSAKAKSD 108
                 2334444444444444355556666666666666666666655555555555555222222 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.042
  PF04499.10 263 leeeeeseeeaedtsadaeqdsaedkreleasnasedseeededdeeseeseesees 319
                 +++e +++e+++   a+++++++++++++++s++s ++  ++++d++++ +e ++e+
  MMETSP0890-20130614|7740_1 485 AKAEAKKKEKEAAAAAKENEQATANEEQIDVSSESVEDPPTEDEDDDEDFEEYDHEE 541
                 111111111111112222233344444444444433322222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1708  (0.124927); expected 273.4 (0.02)
Passed bias filter:                      560  (0.0409596); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.41u 0.36s 00:00:01.77 Elapsed: 00:00:01.12
# Mc/sec: 1386.46
//
Query:       MMETSP0890-20130614|7742_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-34  116.8   0.1      7e-34  115.8   0.0    1.5  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    1.8e-25   89.1   1.2    4.3e-25   87.9   0.8    1.7  1  PF13012.1  Maintenance of mitochondrial structure and function
    5.3e-08   32.2   0.0      9e-08   31.5   0.0    1.4  1  PF14464.1  Prokaryotic homologs of the JAB domain


Domain annotation for each model (and alignments):
>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0   1.5e-37     7e-34       2     113 ..      28     139 ..      27     140 .. 0.97

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 1.5e-37
  PF01398.16   2 svqavhleslvllkildhalrtekeevmGlliGelnddttveitnvfalprsetekdvdaveldqeekksellkklrgr.ervVGWYhshphitvwlshvdvrtqamyqmmdq 113
                 + ++v+++sl+llk+l+h + + + evmGl++G+  d+ t+  ++vfa+p+s+t  +v+av+++ ++k+ e+lk++ gr e+vVGWYhshp++++w+s vd++tq+++++++q
  MMETSP0890-20130614|7742_1  28 TSEKVQISSLALLKMLKHGRAGVPMEVMGLMLGQFVDEYTIVCVDVFAMPQSGTGVSVEAVDPVFQTKMLEMLKQT-GRpEMVVGWYHSHPGFGCWMSGVDINTQQSFEALNQ 139
                 5689***********************************************************************9.999*****************************9998 PP

>> PF13012.1  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.8   9.4e-29   4.3e-25       2     115 .]     174     296 ..     173     296 .. 0.96

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 9.4e-29
   PF13012.1   2 Eaeei..........gvehllrdlndqyys.nls.rkleseqkmLknLhkklweiglyledveagklplnhsilrklqsllnllpnlnnkeleeefnvetndqllvvylgkldrkqi...alhelienk 115
                 E++++          ++++l+++ln++yys  l  rk+++e++mL nL k++w+ gl++  +      +  s+l klq++ + ++++ n++++ee  + t+d+ lv ++gk+d+ ++   ++++l+ ++
  MMETSP0890-20130614|7742_1 174 EPRQTtsnvghlkkpSIQALIHGLNRHYYSmVLDyRKNDLEEQMLTNLYKQTWSSGLKTTRF----ESHADSNLTKLQDMASHAKAY-NDRIQEEHGK-TPDEILVNNVGKIDPRRHlesNVNDLMADN 296
                 9***66677888999***********************************************....*********************.********99.**************************9865 PP

>> PF14464.1  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     2e-11     9e-08       5      88 ..      39     140 ..      35     175 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2e-11
   PF14464.1   5 leailaharreypeEacglllgkeekeevivvpvln............pdpedslaaakf............earekglevvgiwHSHPggsarPSetDrasaeala....g 88 
                 l ++l+h r+  p E +gl+lg   +e +iv+  +             +          +            +++ + + vvg +HSHPg +   S  D+ + +  +     
  MMETSP0890-20130614|7742_1  39 LLKMLKHGRAGVPMEVMGLMLGQFVDEYTIVCVDVFampqsgtgvsveA----------VdpvfqtkmlemlKQTGRPEMVVGWYHSHPGFGCWMSGVDINTQQSFEalnqR 140
                 6789*******************97777777777776755555555540..........14455555556689**************************9998876666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 1076.62
//
Query:       MMETSP0890-20130614|7743_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.1   0.0      0.033   13.4   0.0    1.3  1  PF07423.6 Protein of unknown function (DUF1510)


Domain annotation for each model (and alignments):
>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-06     0.033       4      36 ..     422     454 ..     419     488 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-06
   PF07423.6   4 ekrskrrkanvvLniaiaiVvvlivivaaqllv 36 
                 e  +k++k++++L ++i+++v+ i+i   +llv
  MMETSP0890-20130614|7743_1 422 ESTTKKKKSTQALPLLITVIVLAIIICCCSLLV 454
                 56789***********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:01.35
# Mc/sec: 905.29
//
Query:       MMETSP0890-20130614|7745_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-28   98.6   2.8      1e-15   58.0   0.0    3.4  3  PF00005.22 ABC transporter
    6.2e-20   72.2   9.1    9.1e-08   32.2   0.0    4.5  3  PF13304.1  AAA domain
    7.8e-09   34.9  14.8    0.00029   19.9   0.1    4.9  3  PF02463.14 RecF/RecN/SMC N terminal domain
    8.7e-08   31.4   0.0     0.0007   18.9   0.0    2.6  2  PF13555.1  P-loop containing region of AAA domain
    5.7e-06   26.7   0.1       0.05   13.9   0.0    3.1  2  PF08477.8  Miro-like protein
    7.2e-06   26.3  18.2    0.00011   22.5   0.2    4.0  3  PF13191.1  AAA ATPase domain
      1e-05   24.9   5.3     0.0015   17.8   0.0    4.0  3  PF13481.1  AAA domain
    5.9e-05   22.1   2.8        2.4    7.0   0.0    4.0  4  PF13175.1  AAA ATPase domain
    9.4e-05   21.9   0.1       0.21   11.0   0.0    2.9  2  PF05729.7  NACHT domain
    0.00015   20.9   0.1       0.28   10.2   0.0    2.5  2  PF03193.11 Protein of unknown function, DUF258
    0.00099   18.5   0.0        0.2   11.0   0.0    2.2  2  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
    0.00099   18.2   0.0     0.0093   15.1   0.0    2.2  2  PF02562.11 PhoH-like protein
     0.0021   18.1   0.1          2    8.5   0.0    3.1  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0023   17.9   0.2        1.6    8.8   0.1    3.0  2  PF00910.17 RNA helicase
      0.003   17.7  25.3      0.019   15.1   5.3    4.1  3  PF13476.1  AAA domain
      0.005   15.6   0.6        1.2    7.9   0.0    2.6  2  PF05673.8  Protein of unknown function (DUF815)
     0.0072   15.6   2.4      0.059   12.6   0.3    2.8  2  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.54    9.8   0.0    2.7  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.011   15.3   0.1          2    8.0   0.0    3.0  2  PF07728.9  AAA domain (dynein-related subfamily)
      0.019   15.6   9.3      0.052   14.2   0.0    4.1  3  PF13207.1  AAA domain
      0.022   14.6   2.1       0.95    9.3   0.0    3.4  3  PF01926.18 50S ribosome-binding GTPase
      0.063   12.9   0.4       0.36   10.4   0.0    2.5  2  PF13245.1  Part of AAA domain
      0.088   11.4   1.4       0.64    8.6   0.0    2.9  4  PF03308.11 ArgK protein
      0.095   12.3   4.4        7.8    6.1   0.0    3.6  5  PF00350.18 Dynamin family
        1.2    9.1  14.3        3.2    7.7   0.6    4.8  3  PF13401.1  AAA domain
        1.9    8.3   7.8       0.53   10.1   0.1    3.5  2  PF13558.1  Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   1.9e-18     1e-15       1     118 []      54     201 ..      54     201 .. 0.93
   2 ?    0.8   0.2         1   5.5e+02      27      76 ..     301     352 ..     263     380 .. 0.57
   3 !   38.1   0.0   2.9e-12   1.5e-09       2     118 .]     388     520 ..     387     520 .. 0.69

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 1.9e-18
                 HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------...--BHHHHHH----S--........................................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekk........................................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 S+Llk+l+g  + ++ge+ ++ + r            i  ++q++l+    + tvre+l  ++  +                                          ++r+  +++k+g+++l+++ +vs LSgG+k+r alA+a++ ++++llLDEPtn
  MMETSP0890-20130614|7745_1  54 SSLLKILAGVDRLDKGELIIKkGLR------------IWLVAQEALEDveGSITVRETLLNGEGTAFvaareyetalgllkedgespnilrryeraleaaeredawaLEARLNTAVQKLGISHLMHR-PVSALSGGEKKRTALAAAIAADADVLLLDEPTN 201
                 89*******************4455............9*******9999999999999987766655999999999999999999999999999999***9**************************.********************************8 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 1
                 GGG.B-HHHHH.EEEE-------.--BHHHHHH----S---HHHHHHHHHH- CS
                 xxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22  27 les.dkleklr.igyipqdpllfpeltvrenldmakeekktdkrieevlekv 76 
                  ++ +  ++++ ++ ++++++++++++v++    + +e+k +++ +   + +
  MMETSP0890-20130614|7745_1 301 ARQtKAKHRIQnVQILKNEAQSNQRFQVKDLSPTNSKENKNTQKKQTKTALL 352
                 2221223334477777777777777777555554444444333333333333 PP

  == domain 3    score: 38.1 bits;  conditional E-value: 2.9e-12
                 HHHHHHTTSS---....---EEE-...--BGGG.B-HHHHHEEEE-------..--BH.........HHHHH----S---HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEESTTT CS
                 xxxxxxxxxxxxx....xxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00005.22   2 TLlklltgelkpt....egeievd.ndrkdles.dkleklrigyipqdpllf.peltv.........renldmakeekktdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                 +L++++++   +t    +g i +  + +k+  + + ++++r++y +qd  +  + +++          ++ d++k+e+  ++++ ++le++ ++e  +++ r s LSgG+ +r++lA  l k  +ll++DEP n
  MMETSP0890-20130614|7745_1 388 SLAAAIAAAALKTgqlvAGGIFLTkKRVKTDGHiRFAKNVRVAYYAQDISQLrEMFDMtpldvaidiISQRDHFKPED-ITTEAIKLLERYAFEEhIIRTARLSDLSGGELRRLQLASILDKPCDLLIADEPSN 520
                 555666655554444444444444234444444233444559999999999964445455666655533333444444.899*************88888********************************86 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-05     0.011       4      26 ..      45      65 ..      45      93 .. 0.79
   2 !   32.2   0.0   1.7e-10   9.1e-08     220     298 ..     156     230 ..     111     235 .. 0.79
   3 !   14.5   5.3   4.4e-05     0.023       3     303 .]     377     553 ..     376     553 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.2e-05
   PF13304.1  4 iiGpNgsGKSnlLkaldflfrde 26
                + G+Ng+GKS+lLk+l+++   +
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILAGVD--R 65
                56**************9983..3 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.7e-10
   PF13304.1 220 dviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298
                  v +l  ++    p s lS G+k+  al++a++ +    +vll+DEp n+L+  ++r l + l  +++ ++ +if +H+
  MMETSP0890-20130614|7745_1 156 AVQKLGISHLMHRPVSALSGGEKKRTALAAAIAADA---DVLLLDEPTNHLDIWATRWLEQYLLREAT-NTAVIFISHD 230
                 55666666667789999*******************...*********************99966666.6********8 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 4.4e-05
   PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvlld 303
                 +iiG NgsGKS+l  a++                           l++ +    + f + + ++ + ++r+  ++    +                                                  ++ + l  + ++t+++  +  i++++                      + +  d+  + i++l                          + ++++  +   lsdlS G++r l l+++l   +   ++l+ DEp n L+   l+ l ++l +  n  + l++++H+  l+d
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAA------------------------ALKTGQLVAGGIFLTKKRVKTDGHIRFAKNVRVAYY-------------------------------------------------AQDISQLREMFDMTPLDVAIDIISQRD----------------------HFKPEDITTEAIKLL------------------------ERYAFEEHIIRTARLSDLSGGELRRLQLASILDKPC---DLLIADEPSNDLDLATLQSLERFLLNDFN--GALLLVSHDRALVD 553
                 8****************765........................344444444444444444444444444444444444.................................................113333333333333333333333333......................222222222222222........................222222222223346777*******99998888888...*****************999999966666..9*******988875 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   5.6e-07   0.00029      29     204 ..      45     236 ..      37     247 .. 0.64
   2 ?    1.0   0.6      0.34   1.8e+02      68     135 ..     252     318 ..     244     375 .. 0.84
   3 !   14.0   1.8   3.7e-05     0.019      27      45 ..     376     394 ..     368     563 .. 0.58

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.6e-07
                 E--------HHHHHHHHHH------.-.------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE.............---EE-HHHHHHHHHCTT--TT...................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  29 ivGpNGSGKsnvldAilFvLGeksakk.lrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseyki.............ngkevtkkevaellesagiske...................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlek 204
                 + G NG+GKs++l  +  v   ++ +  +++     l+ +++ ++   s +v  t+ n + ++ + ++e+++   + +++  +  i             ++  + ++                                 +LSgGek+ +ala  +A      a + llDe   +LD   ++ + ++l ++ +n+ +i is+++++  +
  MMETSP0890-20130614|7745_1  45 LAGDNGCGKSSLLKILAGVDRLDKGELiIKKGLRIWLVAQEALEDVEGSITVRETLLNGEGTAFVAAREYETALGLLKEDGESPNIlrryeraleaaerEDAWALEA-------------RlntavqklgishlmhrpvsALSGGEKKRTALAAAIAA----DADVLLLDEPTNHLDIWATRWLEQYLLREATNTAVIFISHDRRFAVQ 236
                 56888888888888776654444443303333344455554555555566777777777777666666666655554444433333133322222222122222223.............233334455555667788889**********9988775....56789***********************************9987544 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.34
                 --------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF02463.14  68 skskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske 135
                 ++++++++   vei+++n+ k+  +++e+ s t rvk k e  +  +g ++++++ ++ +++++i k+
  MMETSP0890-20130614|7745_1 252 HEKQDNINDDLVEIYLRNKAKR-LLDDETASQTARVKLKRELAWLRQGAKARQTKAKHRIQNVQILKN 318
                 4778888888999999999998.777888888888888899999999999999999999999999775 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 3.7e-05
                 EEE--------HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
  PF02463.14  27 taivGpNGSGKsnvldAil 45 
                  ai+G+NGSGKs++  Ai 
  MMETSP0890-20130614|7745_1 376 HAIIGSNGSGKSSLAAAIA 394
                 68***************93 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0     0.001      0.53      22      40 ..      39      57 ..      21      61 .. 0.87
   2 !   18.9   0.0   1.3e-06    0.0007      15      46 ..     366     396 ..     357     404 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.001
   PF13555.1 22 kgkntlltGasGsGKSTll 40
                +g+   l+G++G GKS+ll
  MMETSP0890-20130614|7745_1 39 EGERLHLAGDNGCGKSSLL 57
                566889***********97 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.3e-06
   PF13555.1  15 htveidpkgkntlltGasGsGKSTllDAiqtl 46 
                   +e+  +g+  +++G +GsGKS+l  Ai++ 
  MMETSP0890-20130614|7745_1 366 FCFELG-RGDRHAIIGSNGSGKSSLAAAIAAA 396
                 556666.46799****************9875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   9.5e-05      0.05       1      25 [.      42      66 ..      42     100 .. 0.85
   2 !    9.3   0.0    0.0027       1.4       3      23 ..     377     397 ..     375     460 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.5e-05
   PF08477.8  1 kvvvvGdkgvGKssllsqlvgeefp 25
                +++++Gd g+GKssll+ l+g ++ 
  MMETSP0890-20130614|7745_1 42 RLHLAGDNGCGKSSLLKILAGVDRL 66
                7899*************99988765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0027
   PF08477.8   3 vvvGdkgvGKssllsqlvgee 23 
                 +++G+ g+GKssl ++++   
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAA 397
                 79***********99888655 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   3.6    0.0021       1.1      21     153 ..      39     217 ..      25     227 .. 0.68
   2 !   22.5   0.2     2e-07   0.00011      27     159 ..     377     531 ..     367     545 .. 0.67
   3 ?    0.6   0.4       1.1   5.9e+02     137     160 ..     637     660 ..     549     668 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0021
   PF13191.1  21 egsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.................................lpysaiiqa......lrellrqlltelaaelggwreallaalga...........lipelegiiglqalvalldaalartrrpklvlvlDD.....lqwadresldlLea 153
                 eg+  l + G+ G+GKSsLl+ la   +l++++ +  k  ++                                    ++++    +         +lr+  ++l+a++++++ al+a l++             p +++  g++  +al  a++a++     vl+lD+       wa+r  ++ L++
  MMETSP0890-20130614|7745_1  39 EGE-RLHLAGDNGCGKSSLLKILAGVDRLDKGELIIKKGLRIWLVaqealedvegsitvretllngegtafvaareyeTALG----LlkedgeSPNILRRYERALEAAEREDAWALEARLNTavqklgishlmHRPVSALSGGEKKRTALAAAIAADAD----VLLLDEptnhlDIWATRWLEQYLLR 217
                 455.68899***********99998888899999888888888887777777777777777777777666655544443333....2444477777777777777777777777777777775555555555544444444444444555555555554....9999999999999999988855544 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2e-07
   PF13191.1  27 lvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.............lpysaiiqa.lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr................rpk.lvlvlD...DlqwadresldlLeallerls 159
                  ++G  G+GKSsL+ ++a+++l+ + ++a+g f   +r              ++y a + + lre+++     +a  + + r++ +    +           +++++ll++ + +++                r   l  +lD   Dl  ad++s dl +a l+ l+
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAALKTGQLVAGGIFLTKKRVktdghirfaknvrVAYYAQDISqLREMFDMTPLDVAIDIISQRDHFKPEDIT-----------TEAIKLLERYAFEEHiirtarlsdlsggelrR-LqLASILDkpcDLLIADEPSNDLDLATLQSLE 531
                 589******************************999999*****99999988666666666866666665555555555555554444333...........23333333333333333333333344444422.13999999888899999998877666665554 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 1.1
   PF13191.1 137 lDDlqwadresldlLeallerlse 160
                 lDD    + ++ld+L++l ++ ++
  MMETSP0890-20130614|7745_1 637 LDDDLQRRGADLDALQDLYDQRTQ 660
                 677777777777777777777554 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3     0.011       5.8      29      55 ..      36      62 ..      25     231 .. 0.83
   2 !   17.8   0.0   2.8e-06    0.0015      31      66 ..     371     413 ..     369     470 .. 0.80
   3 ?   -0.1   0.2      0.87   4.6e+02     101     139 ..     616     657 ..     591     669 .. 0.53

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.011
   PF13481.1 29 llprgsltllaGapgtGKStlalqlaa 55
                +l +g+ + laG+ g+GKS+l+  la+
  MMETSP0890-20130614|7745_1 36 VLKEGERLHLAGDNGCGKSSLLKILAG 62
                577899999***********9965554 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 2.8e-06
   PF13481.1  31 prgsltllaGapgtGKStlalqlaaava.tGepflg......p 66 
                  rg  ++++G+ g+GKS+la+++aaa++ tG+ + g      +
  MMETSP0890-20130614|7745_1 371 GRGDRHAIIGSNGSGKSSLAAAIAAAALkTGQLVAGgifltkK 413
                 579999**********************955555544433352 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.87
   PF13481.1 101 enlllvslag..v.gslrltaddrrdalltadlerllaaiee 139
                 +  ++++l++  +  +l l++ d++ +++ adl++l +++++
  MMETSP0890-20130614|7745_1 616 APRDIAKLEQqiEeRELELAKLDDDLQRRGADLDALQDLYDQ 657
                 222222222201333455555566666666666666666666 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0063       3.3      27      43 ..      45      64 ..      36     102 .. 0.87
   2 ?    3.1   0.0     0.068        36     372     408 ..     193     228 ..     166     233 .. 0.80
   3 ?   -2.8   3.6         4   2.1e+03     265     331 ..     284     363 ..     248     374 .. 0.59
   4 !    7.0   0.0    0.0045       2.4      26      56 ..     377     426 ..     361     457 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0063
   PF13175.1 27 iiGeNgsGKttILeal...e 43
                + G Ng+GK+++L++l   +
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILagvD 64
                68**************6664 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.068
   PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiit 408
                 +ll+DEP  hl++ + + l  +L   a  n+  i+i+
  MMETSP0890-20130614|7745_1 193 VLLLDEPTNHLDIWATRWLEQYLLREAT-NTAVIFIS 228
                 9************999999999888887.55555554 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 4
   PF13175.1 265 k................nqenleeeinkklqkllkkklsnlkanekiklneklksrvneinkeykfekkldennikleikeyv 331
                 +                  +++ ++ ++++q l+++  sn  +++++k+   ++s++n++++ ++ ++ l+ +  +l+ ++++
  MMETSP0890-20130614|7745_1 284 ArvklkrelawlrqgakARQTKAKHRIQNVQILKNEAQSN--QRFQVKDLSPTNSKENKNTQKKQTKTALL-EIDDLYAHDCF 363
                 3444555555555544333344455566666677777777..58888888888887775555555554444.66677777665 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0045
   PF13175.1  26 viiGeNgsGKttILeal...................eklknrknmlfikk 56 
                  iiG NgsGK+++  a+                   +++k+ ++ +f+k+
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIaaaalktgqlvaggifltkKRVKTDGHIRFAKN 426
                 7*************999998888888888866666666666666666655 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0035       1.9       4      21 ..      44      61 ..      41     101 .. 0.85
   2 !   11.0   0.0    0.0004      0.21       4      28 ..     377     401 ..     374     445 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0035
   PF05729.7  4 ilqGeaGsGKTtLlqkla 21
                 l G++G+GK+ Ll+ la
  MMETSP0890-20130614|7745_1 44 HLAGDNGCGKSSLLKILA 61
                689***********9886 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0004
   PF05729.7   4 ilqGeaGsGKTtLlqklasawakgk 28 
                 ++ G +GsGK+ L++ +a a+ k  
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAALKTG 401
                 799**************98755443 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00053      0.28      32      65 ..      36      70 ..      22      78 .. 0.81
   2 !    8.1   0.0    0.0023       1.2      22      58 ..     359     396 ..     318     442 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00053
                HCTT.SBEEEE-------HHHHHHH--------S- CS
  PF03193.11 32 llkd.ktsvlvGqSGvGKSsLinallpeldlkvge 65
                +lk+ +   l+G  G GKSsL+++l++  +l  ge
  MMETSP0890-20130614|7745_1 36 VLKEgERLHLAGDNGCGKSSLLKILAGVDRLDKGE 70
                5666577889***************9987776666 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0023
                 HHTT-HHHHHHCTT.SBEEEE-------HHHHHHH--- CS
  PF03193.11  22 tkegleelaellkd.ktsvlvGqSGvGKSsLinallpe 58 
                  ++ +e++ ++l   +  +++G+ G GKSsL  a++  
  MMETSP0890-20130614|7745_1 359 AHDCFEQFCFELGRgDRHAIIGSNGSGKSSLAAAIAAA 396
                 4556666666776558899************9998765 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.019        10      12      39 ..      37      64 ..      32     121 .. 0.71
   2 !   11.0   0.0   0.00038       0.2      10      49 ..     368     596 ..     365     650 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.019
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PF00006.20 12 ivqGqttlipGafgcGktvisqslskns 39
                + +G++  + G+ gcGk+++++ l+   
  MMETSP0890-20130614|7745_1 37 LKEGERLHLAGDNGCGKSSLLKILAGVD 64
                568*****************99887655 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00038
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................................................................................................................................................x RF
  PF00006.20  10 fPivqGqttlipGafgcGktvisqslsknsnsdaiiyvg.............................................................................................................................................................................................i 49 
                 f +++G + +i+G  g Gk+++++ ++  + +    ++g                                                                                                                                                                                             +
  MMETSP0890-20130614|7745_1 368 FELGRGDRHAIIGSNGSGKSSLAAAIAAAALKTGQLVAGgifltkkrvktdghirfaknvrvayyaqdisqlremfdmtpldvaidiisqrdhfkpeditteaiklleryafeehiirtarlsdlsggelrrlqlasildkpcdlliadepsndldlatlqslerfllndfngalllvshdralvdatcnsllvlpgdgfvsqfsgsiddyiqlmdsaddeyldnhqiC 596
                 6789**********************99997666644443555566666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666555555555555555555555555555555555555555555555555555555555555555555555555555555555555552 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.68   3.6e+02      20      48 ..      41      70 ..      33      78 .. 0.79
   2 !   15.1   0.0   1.8e-05    0.0093      22      80 ..     376     433 ..     364     491 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.68
  PF02562.11 20 divfaiGpaGtGKT.ylavalavealkkkk 48
                + + ++G  G+GK+ +l + ++v+ l k++
  MMETSP0890-20130614|7745_1 41 ERLHLAGDNGCGKSsLLKILAGVDRLDKGE 70
                5567899******63778999999988765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.8e-05
  PF02562.11  22 vfaiGpaGtGKTylavalavealkkkkv..kriiltRpaveageelGflpgdleekvdpyl 80 
                   +iG+ G+GK+ la a+a++alk++++    i lt++ v+ + ++ f +     +v++y 
  MMETSP0890-20130614|7745_1 376 HAIIGSNGSGKSSLAAAIAAAALKTGQLvaGGIFLTKKRVKTDGHIRFAKNV---RVAYYA 433
                 6789*********************7752257999**999998888887653...444444 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021        11       3      20 ..      45      62 ..      43      95 .. 0.85
   2 !    8.5   0.0    0.0037         2       3      50 ..     378     443 ..     377     455 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.021
                EE-------HHHHHHHHH CS
  PF00004.24  3 lyGppGtGKTllakavak 20
                l G  G+GK++l k +a 
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILAG 62
                89*************996 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0037
                 EE-------HHHHHHHHHHC........THEEEEEECCSSSSS..................T-HHHHHHHHHHH CS
  PF00004.24   3 lyGppGtGKTllakavakel........gvefleisgsellsk..................yvgesekkirelf 50 
                 ++G  G GK++la a+a  +        g          +l k                  y  +  +++re+f
  MMETSP0890-20130614|7745_1 378 IIGSNGSGKSSLAAAIAAAAlktgqlvaG--------GIFLTKkrvktdghirfaknvrvaYYAQDISQLREMF 443
                 589**************996333222221........1111111222222233333555555555555555555 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.023        12       3      19 ..      45      61 ..      43      73 .. 0.89
   2 !    8.8   0.1     0.003       1.6       3      29 ..     378     404 ..     376     480 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.023
  PF00910.17  3 lyGpsgeGKStlakeLa 19
                l G++g+GKS+l k La
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILA 61
                78**********99876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.003
  PF00910.17   3 lyGpsgeGKStlakeLakallkklklk 29 
                 + G++g GKS+la  +a+a lk+ +l 
  MMETSP0890-20130614|7745_1 378 IIGSNGSGKSSLAAAIAAAALKTGQLV 404
                 78****************999877443 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1      0.01       5.3      25      37 ..      46      58 ..      45      63 .. 0.86
   2 ?    1.1   4.0      0.71   3.7e+02     105     192 ..     255     349 ..     216     360 .. 0.44
   3 !   15.1   5.3   3.7e-05     0.019      21     176 ..     375     639 ..     361     681 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.01
   PF13476.1 25 tGpNGsGKTTild 37
                 G+NG+GK+++l+
  MMETSP0890-20130614|7745_1 46 AGDNGCGKSSLLK 58
                6**********97 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.71
   PF13476.1 105 vkkeilellei...deleqfleellksdke..il.pliaylgqerekekfklkekkkrleelekeleeledekellek....llqeeekekeleelee 192
                 +++ +++l+ei   ++ +  l+++  s+     l + +a+l q+  k   ++ + k r+++++   +e+++ ++++ k     + +e+k+ ++++ + 
  MMETSP0890-20130614|7745_1 255 QDNINDDLVEIylrNKAKRLLDDETASQTArvKLkRELAWLRQGA-K--ARQTKAKHRIQNVQILKNEAQSNQRFQVKdlspTNSKENKNTQKKQTKT 349
                 222222233332223333333332222222332224445555554.3..2233334455555555555555555544422221222222222222222 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 3.7e-05
   PF13476.1  21 ltlItGpNGsGKTTildAiclaL..ygktsrlkksrgrgilkddveiekegkkkayvelsfeddkgrek..................................tylieeerektkkkgkkvkkeilelleideleqflee....llksd.keilpliaylgqer.....ekekfklkekkk...............................................................................rleelekeleeledekellek 176
                   +I+G NGsGK+++  Ai  a   +g+      + +++ +k+d +i++ +  +  v  + +d+++ ++                                  +y +ee +++t   ++ + +    +l+  +l ++l++    l+ ++ ++ l+l  ++  er     +          +                                                                                +++le+++ee+e e  +l++
  MMETSP0890-20130614|7745_1 375 RHAIIGSNGSGKSSLAAAIAAAAlkTGQLVAGGIFLTKKRVKTDGHIRFAK--NVRVAYYAQDISQLREmfdmtpldvaidiisqrdhfkpeditteaiklleRYAFEEHIIRTARLSDLSGG----ELRRLQLASILDKpcdlLIADEpSNDLDLATLQSLERfllndF----------NgalllvshdralvdatcnsllvlpgdgfvsqfsgsiddyiqlmdsaddeyldnhqicgstqdstedmhkarrrrhnaprDIAKLEQQIEERELELAKLDD 639
                 568****************87763777774444445555566666666622..2223333333333333566666666666666666666667777776666644444444444433333332....3333333333333332233322133455555555555222220..........12344444444555555555555555555555555444444444444444444444444444444455555555555555444444444444444444444 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0022       1.2      57      94 ..      44      89 ..      33      99 .. 0.67
   2 ?    5.2   0.0     0.014       7.4      58      80 ..     378     400 ..     362     416 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
   PF05673.8 57 LLwGarGtGKSslvkallneyaeeg........Lrlievekedlkd 94
                 L G+ G+GKSsl+k l    + ++        Lr+  v++e l+d
  MMETSP0890-20130614|7745_1 44 HLAGDNGCGKSSLLKILAGVDRLDKgeliikkgLRIWLVAQEALED 89
                599************8864322211134444446666666666665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.014
   PF05673.8  58 LwGarGtGKSslvkallneyaee 80 
                 ++G+ G+GKSsl  a+ ++  ++
  MMETSP0890-20130614|7745_1 378 IIGSNGSGKSSLAAAIAAAALKT 400
                 58***********9999887665 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.36   1.9e+02      37      63 ..      29      56 ..      17      64 .. 0.78
   2 !   12.6   0.3   0.00011     0.059      50      78 ..     376     404 ..     369     415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.36
  PF01695.12 37 elaslsfv.eqaenlvllGpsGvGKthl 63
                +l + +fv ++ e l l G  G GK+ l
  MMETSP0890-20130614|7745_1 29 QLCGANFVlKEGERLHLAGDNGCGKSSL 56
                66677776366799***********977 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00011
  PF01695.12  50 lvllGpsGvGKthlAialgveavraglsv 78 
                  +++G  G GK+ lA+a++ +a + g  v
  MMETSP0890-20130614|7745_1 376 HAIIGSNGSGKSSLAAAIAAAALKTGQLV 404
                 579********************999765 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.19     1e+02       2      21 ..      42      61 ..      41      69 .. 0.89
   2 ?    9.8   0.0     0.001      0.54       4      32 ..     377     405 ..     374     456 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.19
                EEEEE-------HHHHHHHH CS
   PF03205.9  2 ivavvGpkdsGKTtlieklv 21
                ++++ G  + GK++l+++l+
  MMETSP0890-20130614|7745_1 42 RLHLAGDNGCGKSSLLKILA 61
                57889***********9986 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.001
                 EEE-------HHHHHHHHHHHHH------ CS
   PF03205.9   4 avvGpkdsGKTtlieklvnklkergyrva 32 
                 a++G  +sGK++l+  ++  +++ g  va
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAALKTGQLVA 405
                 89*****************9999987766 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.073        38       4      20 ..      45      61 ..      42      68 .. 0.89
   2 ?    8.0   0.0    0.0037         2       4      44 ..     378     418 ..     376     435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.073
                EE------HHHHHHHGG CS
   PF07728.9  4 LvGppGtgKselaerla 20
                L G+ G+gKs+l + la
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILA 61
                89**********99887 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0037
                 EE------HHHHHHHGGGGBS--EEEEE--TT--HHHH--- CS
   PF07728.9   4 LvGppGtgKselaerlaealnreveyvqltrdtteedlkgr 44 
                 ++G  G+gKs+la  +a+a  ++ + v++  ++t++ +k  
  MMETSP0890-20130614|7745_1 378 IIGSNGSGKSSLAAAIAAAALKTGQLVAGGIFLTKKRVKTD 418
                 69*****************9888888888888888877765 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.4      0.25   1.3e+02       7      40 ..      48      78 ..      42     317 .. 0.87
   2 ?   14.2   0.0   9.9e-05     0.052       3      47 ..     377     428 ..     375     503 .. 0.57
   3 ?   -0.3   0.2       2.9   1.5e+03      35      64 ..     630     658 ..     574     680 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.25
                -TT---HHHHHHHHHHSTEEEEEGGGB--GGGS- CS
   PF13207.1  7 ppGsGKsTlakeLaerlglpvlslddllreeglk 40
                  G+GKs+l k La   g++ l+ ++l++++gl+
  MMETSP0890-20130614|7745_1 48 DNGCGKSSLLKILA---GVDRLDKGELIIKKGLR 78
                569**********6...57888888844555544 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 9.9e-05
                 --B--TT---HHHHHHHHHHS....TEEEEEGGGB-......-GGGS-B-----B CS
   PF13207.1   3 aitGppGsGKsTlakeLaerl....glpvlslddll......reeglkelddger 47 
                 ai+G  GsGKs+la ++a +         l  + ++      +++g + + +++r
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAAlktgQ---LVAGGIFltkkrvKTDGHIRFAKNVR 428
                 8****************996313220...22222111222224444444444443 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 2.9
                 -GGGS-B-----B--SSGGGB-HHHHHHHH CS
   PF13207.1  35 reeglkelddgereskdadadllaaildgl 64 
                 re  l++l d++++++ ad+d+l++ +d+ 
  MMETSP0890-20130614|7745_1 630 RELELAKL-DDDLQRRGADLDALQDLYDQR 658
                 22333333.333355556666666665555 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.18        92       4      21 ..      45      62 ..      42      83 .. 0.84
   2 ?   -1.0   0.1       2.9   1.5e+03      42      76 ..     313     355 ..     288     360 .. 0.59
   3 ?    9.3   0.0    0.0018      0.95       3      29 ..     377     402 ..     375     559 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.18
                EE--TT---HHHHHHHHC CS
  PF01926.18  4 ivGrpNvGKStLinaLtg 21
                + G   +GKS+L++ L g
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILAG 62
                789999*******99875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.9
                 E........ETTEEEEEE---SSSHHHHHHHHHHHHHHHHHHC CS
  PF01926.18  42 v........kkekiilvDtPGiiegasedkeiegikkylekve 76 
                 v         ++++++ D+  + ++++++ +++++k +l +++
  MMETSP0890-20130614|7745_1 313 VqilkneaqSNQRFQVKDLSPTNSKENKNTQKKQTKTALLEID 355
                 2233222223334889999998888777776667777777765 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0018
                 EEE--TT---HHHHHHHHCSTCTEETS CS
  PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsd 29 
                 ai+G   +GKS+L  a+  + a k+++
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAA-ALKTGQ 402
                 89***************954.444443 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.4   3.9e+03      12      31 ..      43      60 ..      37      65 .. 0.70
   2 ?   10.4   0.0   0.00068      0.36      15      42 ..     378     401 ..     369     451 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 7.4
   PF13245.1 12 llvvtGgPGtGKTttlaaii 31
                l +  G  G GK+  l++i 
  MMETSP0890-20130614|7745_1 43 LHL-AGDNGCGKS-SLLKIL 60
                444.888899999.666655 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00068
   PF13245.1  15 vtGgPGtGKTttlaaiiaallaarekpg 42 
                 + G  G+GK+ ++aai+aa+l +    g
  MMETSP0890-20130614|7745_1 378 IIGSNGSGKSSLAAAIAAAALKT----G 401
                 58999*****9999999999944....2 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   8.2e+02      31      50 ..      42      61 ..      38      85 .. 0.77
   2 ?   -0.7   0.0      0.81   4.3e+02     186     223 ..     111     167 ..     103     174 .. 0.71
   3 ?   -3.2   0.1       4.9   2.6e+03     163     220 ..     239     301 ..     220     332 .. 0.54
   4 ?    8.6   0.0    0.0012      0.64       8      61 ..     352     405 ..     346     408 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
                EE--B-------HHHHHH-- CS
  PF03308.11 31 vvGltGvPGaGkstlvekli 50
                ++ l G  G Gks l++ l+
  MMETSP0890-20130614|7745_1 42 RLHLAGDNGCGKSSLLKILA 61
                6778999*******997664 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.81
                 HHHHHHHHHHS--...................SBTTB--EEEE-BTTTTB--HHHHH CS
  PF03308.11 186 arelraaleleee...................kekeWrppvlktsavegeGidelvd 223
                 are+++al l +e                   +e+ W  +    +av++ Gi++l++
  MMETSP0890-20130614|7745_1 111 AREYETALGLLKEdgespnilrryeraleaaeREDAWALEARLNTAVQKLGISHLMH 167
                 555666666555555555555555555555546899**9999999*******99987 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.9
                 ---TTT-S..EEEE----HHHHHHHHHHHHH.HHHHS--S..BTTB--EEEE-BTTTTB--HH CS
  PF03308.11 163 aGlleiaD..ilvvnkaDkeeaekaarelra.aleleeek..ekeWrppvlktsavegeGide 220
                 +G+le+ +  ++   k+D+ + + ++ +lr+ a +l +++  +++ r ++ +  a   +G + 
  MMETSP0890-20130614|7745_1 239 QGVLELDNgyLYRHEKQDNINDDLVEIYLRNkAKRLLDDEtaSQTARVKLKRELAWLRQGAKA 301
                 566666432255556666666666666665413333333322333444444455555555444 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0012
                 HH---HHHHHHHHHHGGG----EEE--B-------HHHHHH---HHHH----EE CS
  PF03308.11   8 veseepeakellrkilpkaGralvvGltGvPGaGkstlveklikelrrrGkrva 61 
                  e +   a++ +++ + + Gr  +  + G+ G+Gks l  ++++ + + G+ va
  MMETSP0890-20130614|7745_1 352 LEIDDLYAHDCFEQFCFELGRGDRHAIIGSNGSGKSSLAAAIAAAALKTGQLVA 405
                 5666667888889999999*******************************9987 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.017       8.9       4      29 ..      46      71 ..      43     117 .. 0.86
   2 ?   -3.0   0.0         9   4.8e+03     115     163 ..     177     224 ..     174     227 .. 0.70
   3 ?   -1.9   0.4       4.2   2.2e+03      88     108 ..     311     331 ..     257     358 .. 0.49
   4 ?    6.1   0.0     0.015       7.8       2      27 ..     377     401 ..     377     476 .. 0.79
   5 ?   -3.0   0.1       9.5     5e+03      59      80 ..     614     635 ..     590     660 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.017
                E--TT---HHHHHHH----------- CS
  PF00350.18  4 vGsqSaGKSSllnaLlgedilprgpg 29
                 G+   GKSSll+ L g d l +g+ 
  MMETSP0890-20130614|7745_1 46 AGDNGCGKSSLLKILAGVDRLDKGEL 71
                688899***********998877765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 9
                 -----HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH------EE- CS
  PF00350.18 115 nkrdqelveeyikkadiilavtdanhdlstsealflarevdpkgkrtiv 163
                 +k++++l+ +++ +ad++l+ ++ nh      ++ l++ +  + ++t v
  MMETSP0890-20130614|7745_1 177 EKKRTALAAAIAADADVLLLDEPTNHLDI-WATRWLEQYLLREATNTAV 224
                 67788888888899999999999999544.5555566666666555555 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 4.2
                 SS-EEEEEEETTS-SEEEEE- CS
  PF00350.18  88 kkvillkilsllvkgltlvDt 108
                 ++v +lk+++  ++   + D+
  MMETSP0890-20130614|7745_1 311 QNVQILKNEAQSNQRFQVKDL 331
                 222333333333333333333 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.015
                 EEE--TT---HHHHHHH--------- CS
  PF00350.18   2 avvGsqSaGKSSllnaLlgedilprg 27 
                 a++Gs  +GKSSl+ a+  ++ l +g
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAA-LKTG 401
                 689************998777.5555 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 9.5
                 T-----CHHHHHHHHHHH---- CS
  PF00350.18  59 ekkledfdevreeieketekla 80 
                 +    d+ +++++ie+++ +la
  MMETSP0890-20130614|7745_1 614 HNAPRDIAKLEQQIEERELELA 635
                 4455566666666666665555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.17        90       9      25 ..      45      61 ..      39     233 .. 0.83
   2 ?    7.7   0.6    0.0061       3.2       8      37 ..     377     426 ..     373     553 .. 0.49
   3 ?    2.7   0.9      0.22   1.1e+02      55     129 ..     592     677 ..     572     679 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.17
   PF13401.1  9 vtGesGvGKTtllrrla 25
                + G  G+GK+ ll+ la
  MMETSP0890-20130614|7745_1 45 LAGDNGCGKSSLLKILA 61
                56899999999998765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0061
   PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaae....................k 37 
                 +++G  G+GK+ l+  +a  + +  +                       +
  MMETSP0890-20130614|7745_1 377 AIIGSNGSGKSSLAAAIAAAALKTGQLVAggifltkkrvktdghirfakN 426
                 699*************9998765444444777777777666666666652 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.22
   PF13401.1  55 lqkllsalglpakg.......rltteellealqealrrrrtrllii.DEaqrLseealeelrslldd....etgvklvlvGtpelek 129
                  +++++  ++++++       r+++ + +++l++++++r+ +l  + D++qr +   l+ l++l+d+    ++ + ++ +  +ele+
  MMETSP0890-20130614|7745_1 592 NHQICGSTQDSTEDmhkarrrRHNAPRDIAKLEQQIEERELELAKLdDDLQR-RGADLDALQDLYDQrtqlQSHIDVLYAQWEELEQ 677
                 6778888888887788888878888888899999999999955555167888.99***********987777777766555556665 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1     0.001      0.53      24      77 ..     164     204 ..     147     213 .. 0.68
   2 ?    0.8   0.2       0.8   4.2e+02      62      85 ..     508     531 ..     480     536 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.001
   PF13558.1  24 kelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklD 77 
                   ++r +++lSGGEk     +alaaA+aa            + ++LDE+++ lD
  MMETSP0890-20130614|7745_1 164 HLMHRPVSALSGGEK---KRTALAAAIAADA----------DVLLLDEPTNHLD 204
                 457899*********...4455555555433..........3355555555555 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.8
   PF13558.1  62 psirlvfLDEAFsklDeeniasll 85 
                 + ++l++ DE+ + lD  +++sl 
  MMETSP0890-20130614|7745_1 508 KPCDLLIADEPSNDLDLATLQSLE 531
                 357788888888888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1020  (0.074605); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.51u 0.41s 00:00:01.92 Elapsed: 00:00:01.24
# Mc/sec: 1321.86
//
Query:       MMETSP0890-20130614|7746_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.061   13.0   0.1       0.17   11.6   0.0    1.7  2  PF07647.12 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.46   6.3e+03      55      65 ..     276     286 ..     275     287 .. 0.84
   2 ?   11.6   0.0   1.3e-05      0.17      21      58 ..     365     405 ..     357     408 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.46
                 HHHHHHHHHCH CS
  PF07647.12  55 rkkilkkiqel 65 
                 rk+il++++++
  MMETSP0890-20130614|7746_1 276 RKRILTQLEDV 286
                 99****99887 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.3e-05
                 SHHHHHHHTS-SCTCCCSSCHHHH....HCCCHHCHHHHHHH CS
  PF07647.12  21 YtenFrdqgitggelllrlteedL....krlGitsvghrkki 58 
                 Y+++F +  ++g + l+ lt e+L    k+lG++   +r++i
  MMETSP0890-20130614|7746_1 365 YAPKFQEFALDG-DFLAALTPEQLddtlKDLGMEIRLERRRI 405
                 9***********.***********999889*99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.77
# Mc/sec: 1291.54
//
Query:       MMETSP0890-20130614|7744_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-46  155.3   0.0    6.4e-45  152.5   0.0    1.9  2  PF00270.24 DEAD/DEAH box helicase
    4.4e-27   93.6   0.0      1e-26   92.4   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.077   12.7   0.0       0.14   11.9   0.0    1.4  1  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   1.4e-48   6.4e-45       1     171 [.     195     383 ..     195     385 .. 0.88
   2 ?    0.4   0.0     0.078   3.6e+02      73     107 ..     457     494 ..     447     534 .. 0.82

  Alignments for each domain:
  == domain 1    score: 152.5 bits;  conditional E-value: 1.4e-48
                 -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H........TTSTS............EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHH..SHHTTTSEEEEEESS-THHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk........kttik............kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqi..lcdgkrlqvivlSATlpkdvk 171
                 tp+Q+ a+p+ l+g+d++++a+TGsGKT+ fl pvl  ll+           +   +             al++aPtreL+ q++++++kf+  +++r ++++gg +++  ql+ l++g+d++v+Tpgrl+d +++g+ +ls +r+lVlDEadr+l++gf++q+++i+ +  + +  ++q+ ++SAT+p++++
  MMETSP0890-20130614|7744_1 195 TPVQKYALPIGLNGRDMMACAQTGSGKTGGFLFPVLVSLLRDGAispdgediD---QsqsytrksrarpNALVLAPTRELVSQIFDEARKFCYCTGVRPVVCYGGADTR-YQLQELERGADLLVATPGRLVDFLERGRVTLSACRFLVLDEADRMLDMGFEPQIRRIVCQedMPRTGDRQTFMFSATFPREMQ 383
                 89**********************************99998544766555551...0555666677777***********************99************955.******999*****************999***************************987733555566***********8765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.078
                 TTSS.EEEEETTSSBHHHHHHHHH....T..-SEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
  PF00270.24  73 kypklrvlliiggvalardqlsvl....dngvdivvgTp 107
                  ++++ +  i+g++++  d++  l    ++++ i+vgT 
  MMETSP0890-20130614|7744_1 457 CNQGFPASSIHGDKSQT-DREHALrdfkSGRTPILVGTD 494
                 45667788999999966.7777778999999******95 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   2.2e-30     1e-26       2      78 .]     455     531 ..     454     531 .. 0.98

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 2.2e-30
                 HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
  PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                 ll ++g+++  +hg+ +q +re+ l++f++g++++lv t+va+rG+d+p+v  Vinfdlpr v++y++riGRtgRag
  MMETSP0890-20130614|7744_1 455 LLCNQGFPASSIHGDKSQTDREHALRDFKSGRTPILVGTDVAARGLDIPNVLQVINFDLPRAVSDYVHRIGRTGRAG 531
                 67899**********************************************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.14      31      85 ..     214     290 ..     194     380 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
  PF04851.10  31 vmaTGtGKTlvaa.......................sliarlar.........kflflvprkelleqaleefkkfeskkiefekkni 85 
                  + TG+GKT   +                       +      +         ++l+l+p++el++q  +e      k++ ++   +
  MMETSP0890-20130614|7744_1 214 CAQTGSGKTGGFLfpvlvsllrdgaispdgedidqsQ------SytrksrarpNALVLAPTRELVSQIFDEA----RKFCYCTGVRP 290
                 578******9888777777777777777766665542......044456689****************9998....55555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.79
# Mc/sec: 1998.99
//
Query:       MMETSP0890-20130614|7748_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-25   88.4   0.6    2.4e-25   88.0   0.4    1.2  1  PF00383.17 Cytidine and deoxycytidylate deaminase zinc-binding region
     0.0053   16.2   0.7     0.0077   15.7   0.5    1.2  1  PF14437.1  MafB19-like deaminase
  ------ inclusion threshold ------
       0.05   13.2   0.5       0.13   11.8   0.4    1.7  1  PF14440.1  Xanthomonas XOO_2897-like deaminase
      0.056   13.1   0.0      0.079   12.6   0.0    1.3  1  PF11501.3  Non structural protein Nsp1


Domain annotation for each model (and alignments):
>> PF00383.17  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.4   6.9e-29   2.4e-25       2     101 ..      34     141 ..      33     142 .. 0.96

  Alignments for each domain:
  == domain 1    score: 88.0 bits;  conditional E-value: 6.9e-29
                 CHHHHHHHHHHHHHTT-BTTTSB----EEEETTSSBEE----BCCSSCC...........CTB-HHHHHHHHHHHH-CCCETTEEEEEEE---CCHHHHHHHHS-TEEEEE CS
  PF00383.17   2 kedeklleialeaakeaykcsnfkvGavivkkngeiistgyngepaggs...........ktiHAEvnAilsaaknggsklegatlyvtlePCgmCakaiiesgikkvvig 101
                 +++e++ +++++a+ ++ +c++ +vG+vivk +++++s+gyng +ag +            t+HAE+nAi++aa++ g+ l+ a+ y+t+ PC +C  a++ +gi++++++
  MMETSP0890-20130614|7748_1  34 TWHEYFATLSVLASARS-PCERLHVGCVIVK-DNRVLSMGYNGFFAGAPhtsivahgheqATVHAEMNAIAHAARS-GIALDKAIAYITHYPCINCYRALVATGIQNIFYI 141
                 69***************.*************.88****************************************99.788888***********************99985 PP

>> PF14437.1  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   2.3e-06    0.0077      76     118 ..      89     130 ..      77     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.3e-06
   PF14437.1  76 nnmakaHAEigaiqqAydaGltkgksmtmyVdrdvCgyCkgdi 118
                  ++a++HAE++ai  A + G+    ++  y++  +C +C  ++
  MMETSP0890-20130614|7748_1  89 HEQATVHAEMNAIAHAARSGIA-LDKAIAYITHYPCINCYRAL 130
                 5799******************.5666679999******8665 PP

>> PF14440.1  Xanthomonas XOO_2897-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   3.9e-05      0.13      40     103 ..      85     145 ..      46     155 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.9e-05
   PF14440.1  40 vakv..gkgvHaErklleqlekkgvepekitelYsElePCsekkkCaelleeslpgaevtysveyg 103
                 va+   + +vHaE ++++++ ++g+  +k  + Y+   PC +   C ++l  +   ++++y  +y 
  MMETSP0890-20130614|7748_1  85 VAHGheQATVHAEMNAIAHAARSGIALDKAIA-YITHYPCIN---CYRALVAT-GIQNIFYIDDYR 145
                 333245899*****************999876.9999*****...*9999886.344455544455 PP

>> PF11501.3  Non structural protein Nsp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.079      63     104 ..      81     123 ..      41     133 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
   PF11501.3  63 dalstdhghkvvelvaeldgiqy.grsgitlgvlvphvgetpi 104
                 ++    hgh+   + ae++ i +  rsgi+l   + ++   p 
  MMETSP0890-20130614|7748_1  81 HTSIVAHGHEQATVHAEMNAIAHaARSGIALDKAIAYITHYPC 123
                 455678***************8736******999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:01.01
# Mc/sec: 403.35
//
Query:       MMETSP0890-20130614|7749_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   16.4   2.7     0.0068   16.0   1.9    1.2  1  PF11712.3 Endoplasmic reticulum-based factor for assembly of V-ATPase


Domain annotation for each model (and alignments):
>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.9     5e-07    0.0068      20      56 ..      46      99 ..      27     115 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5e-07
   PF11712.3 20 k.............speflall....erLraaqeedeYkrlirdvdksqknskp 56
                +              +ef+++     erLr+++ee++Y rl ++++ s+ +s++
  MMETSP0890-20130614|7749_1 46 QqrdedvrakqkarQREFKKQQaieaERLRKEKEERSYDRLFEKASLSSDSSPT 99
                334455555555557888887533338***************777665554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1410  (0.10313); expected 273.4 (0.02)
Passed bias filter:                      637  (0.0465916); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.88
# Mc/sec: 318.61
//
Query:       MMETSP0890-20130614|7840_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-31  108.2   0.3    1.1e-19   69.9   0.0    2.0  2  PF13424.1  Tetratricopeptide repeat
    6.9e-26   89.2   0.3    4.8e-14   51.6   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
      1e-11   44.2   3.7    2.1e-07   30.3   0.5    1.9  2  PF13414.1  TPR repeat
    3.1e-08   32.7   1.1    0.00074   18.8   0.0    2.8  3  PF00515.23 Tetratricopeptide repeat
    2.2e-07   30.1   0.9     0.0014   18.2   0.0    2.8  3  PF07719.12 Tetratricopeptide repeat
    2.7e-07   29.7   0.1     0.0011   18.5   0.0    2.9  3  PF13176.1  Tetratricopeptide repeat
    8.5e-07   28.5   2.6      0.016   15.2   0.0    3.2  2  PF13431.1  Tetratricopeptide repeat
    4.6e-05   23.8   0.5      0.028   14.9   0.1    2.1  2  PF13432.1  Tetratricopeptide repeat
     0.0032   17.8   0.1      0.042   14.3   0.0    2.5  3  PF13428.1  Tetratricopeptide repeat
     0.0049   16.8   0.0     0.0063   16.5   0.0    1.2  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0081   15.7   0.4       0.32   10.7   0.0    2.5  3  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   4.3e-14   5.4e-11      27      77 ..       2      53 ..       1      54 [. 0.95
   2 !   69.9   0.0   9.1e-23   1.1e-19       1      66 [.      18      84 ..      18      85 .] 0.98

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 4.3e-14
   PF13424.1 27 lyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                l+e+a+e+  +++g+ hpd+a+ lnnla l++ + +ydeA+++ e+++ei e
  MMETSP0890-20130614|7840_1  2 LLERAIEIwEKVHGPIHPDLATWLNNLAGLLRNQAQYDEAKPLCERSIEISE 53
                79******88889************************************987 PP

  == domain 2    score: 69.9 bits;  conditional E-value: 9.1e-23
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAl 66
                hpdlat lnnla++lr + +ydeA  l+e+++e+  r+lg++hpd+a +lnnla l+ ++++y+eA+
  MMETSP0890-20130614|7840_1 18 HPDLATWLNNLAGLLRNQAQYDEAKPLCERSIEIsERTLGPNHPDVAISLNNLAGLLKEQKKYKEAR 84
                9*****************************************************************8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.7e-06     0.011      24      42 .]       2      20 ..       1      20 [. 0.96
   2 !   51.6   0.0   3.8e-17   4.8e-14       1      42 []      21      62 ..      21      62 .. 0.98
   3 !   19.4   0.0     5e-07   0.00062       1      23 [.      63      85 .]      63      85 .] 0.95

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.7e-06
   PF13374.1 24 leeealairrrllGddHPd 42
                l+e+a +i+++++G+ HPd
  MMETSP0890-20130614|7840_1  2 LLERAIEIWEKVHGPIHPD 20
                89****************8 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 3.8e-17
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a+ lnnLA +lr++ +y+eA +l e++ +i +r lG++HPd
  MMETSP0890-20130614|7840_1 21 LATWLNNLAGLLRNQAQYDEAKPLCERSIEISERTLGPNHPD 62
                699**************************************8 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 5e-07
   PF13374.1  1 taaalnnLAlalrargryeeAla 23
                +a +lnnLA +l ++++y eA++
  MMETSP0890-20130614|7840_1 63 VAISLNNLAGLLKEQKKYKEARP 85
                789******************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.3e-07   0.00028      26      68 ..       3      52 ..       1      53 [. 0.84
   2 !   30.3   0.5   1.7e-10   2.1e-07       3      58 ..      22      84 ..      20      85 .] 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.3e-07
   PF13414.1 26 yekAleld........pnnaelyynlAlaylklgkdyeeAledyekAleld 68
                +e+A+e++        p+ a  ++nlA +++++  +y+eA   +e+++e++
  MMETSP0890-20130614|7840_1  3 LERAIEIWekvhgpihPDLATWLNNLAGLLRNQA-QYDEAKPLCERSIEIS 52
                788888866666655588899************9.7************997 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.7e-10
   PF13414.1  3 AealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAl 58
                A  l++l+  l ++ +ydeA  ++e+++e++     pn+++    ++nlA ++ ++  +y+eA+
  MMETSP0890-20130614|7840_1 22 ATWLNNLAGLLRNQAQYDEAKPLCERSIEISertlgPNHPDvaiSLNNLAGLLKEQK-KYKEAR 84
                56689************************966666677766666***********86.8***96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.61   7.6e+02      25      31 ..       4      10 ..       2      13 .. 0.69
   2 !   18.8   0.0     6e-07   0.00074       3      31 ..      24      52 ..      22      54 .. 0.92
   3 !   11.4   0.1   0.00014      0.17       1      20 [.      64      83 ..      64      85 .] 0.92

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.61
                HHHHHHH CS
  PF00515.23 25 ekALeln 31
                e+A+e+ 
  MMETSP0890-20130614|7840_1  4 ERAIEIW 10
                7888874 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 6e-07
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
  PF00515.23  3 alynlGnaylklgkydeAleyyekALeln 31
                 l+nl+ +++++ +ydeA   +e+ +e+ 
  MMETSP0890-20130614|7840_1 24 WLNNLAGLLRNQAQYDEAKPLCERSIEIS 52
                68*************************96 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHTT-HHHH CS
  PF00515.23  1 akalynlGnaylklgkydeA 20
                a +l+nl+ ++ +++ky+eA
  MMETSP0890-20130614|7840_1 64 AISLNNLAGLLKEQKKYKEA 83
                5689***************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1   1.3e+03      18      26 ..       4      12 ..       2      14 .. 0.67
   2 !   18.2   0.0   1.1e-06    0.0014       1      31 [.      22      52 ..      22      54 .. 0.93
   3 !    9.3   0.0    0.0008      0.99       1      21 [.      64      84 ..      64      85 .] 0.92

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1
                HHHHHHHHH CS
  PF07719.12 18 eeAleafek 26
                e+A+e +ek
  MMETSP0890-20130614|7840_1  4 ERAIEIWEK 12
                677777776 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleld 31
                a +l+nl+ +++++ +y+eA+ ++e+++e+ 
  MMETSP0890-20130614|7840_1 22 ATWLNNLAGLLRNQAQYDEAKPLCERSIEIS 52
                679*************************986 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0008
                HHHHHHHHHHHHHTT-HHHHH CS
  PF07719.12  1 aealynlGlayyklgdyeeAl 21
                a  l+nl+ ++ ++++y+eA+
  MMETSP0890-20130614|7840_1 64 AISLNNLAGLLKEQKKYKEAR 84
                5679****************7 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.5   6.2e+02      16      24 ..       4      12 ..       2      15 .. 0.81
   2 !   18.5   0.0   8.5e-07    0.0011       2      33 ..      25      56 ..      23      59 .. 0.88
   3 !    7.3   0.0    0.0033       4.1       1      18 [.      66      83 ..      66      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.5
   PF13176.1 16 ekAielyer 24
                e+Aie+ e+
  MMETSP0890-20130614|7840_1  4 ERAIEIWEK 12
                789998887 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 8.5e-07
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpl 33
                l+nLa l +++ +y++A  l+er++++ +  l
  MMETSP0890-20130614|7840_1 25 LNNLAGLLRNQAQYDEAKPLCERSIEISERTL 56
                79*********************998876655 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0033
   PF13176.1  1 allnLarlysrlgdyekA 18
                +l+nLa l  ++ +y++A
  MMETSP0890-20130614|7840_1 66 SLNNLAGLLKEQKKYKEA 83
                79***************9 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.4   0.00023      0.29       8      33 ..      17      42 ..       2      43 .. 0.82
   2 !   15.2   0.0   1.3e-05     0.016       2      33 ..      45      84 ..      44      85 .] 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00023
   PF13431.1  8 ldPnnadaynnLAelllnnGdleeAe 33
                ++P+ a  +nnLA ll n+ +++eA+
  MMETSP0890-20130614|7840_1 17 IHPDLATWLNNLAGLLRNQAQYDEAK 42
                3699********************97 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.3e-05
   PF13431.1  2 yekaleld........PnnadaynnLAelllnnGdleeAe 33
                +e+++e++        P+ a ++nnLA ll+++++++eA+
  MMETSP0890-20130614|7840_1 45 CERSIEISertlgpnhPDVAISLNNLAGLLKEQKKYKEAR 84
                5666666545555222666********************8 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00011      0.13      20      62 ..       3      58 ..       1      61 [. 0.79
   2 !   14.9   0.1   2.2e-05     0.028       3      51 ..      28      84 ..      27      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
   PF13432.1 20 leaalala........PeaaeallllaeallrlgrldeAaallraal.....alaP 62
                le+a++ +        P+ a  l +la +l  + ++deA  l ++ +      l+P
  MMETSP0890-20130614|7840_1  3 LERAIEIWekvhgpihPDLATWLNNLAGLLRNQAQYDEAKPLCERSIeiserTLGP 58
                56666666666677889***********************9999998555555555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.2e-05
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAa 51
                lA +l ++ +ydeA ++ e+ ++          P+ a  l +la +l ++++++eA+
  MMETSP0890-20130614|7840_1 28 LAGLLRNQAQYDEAKPLCERSIEISertlgpnhPDVAISLNNLAGLLKEQKKYKEAR 84
                78999*************88777777*****************************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.3   1.6e+03      18      27 ..       4      13 ..       2      26 .. 0.57
   2 !   14.3   0.0   3.3e-05     0.042       4      39 ..      24      65 ..      21      70 .. 0.81
   3 ?    0.3   0.0       1.1   1.4e+03       6      21 ..      69      84 ..      64      85 .] 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.3
   PF13428.1 18 deAiallrra 27
                ++Ai+  +++
  MMETSP0890-20130614|7840_1  4 ERAIEIWEKV 13
                6777777776 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 3.3e-05
   PF13428.1  4 ll.alarallalGdpdeAiallrrala.....laPddaeall 39
                +l  la +l+++ ++deA  l++r ++     l+P+++++ +
  MMETSP0890-20130614|7840_1 24 WLnNLAGLLRNQAQYDEAKPLCERSIEisertLGPNHPDVAI 65
                55379********************98666666788777765 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.1
   PF13428.1  6 alarallalGdpdeAi 21
                 la +l ++  ++eA+
  MMETSP0890-20130614|7840_1 69 NLAGLLKEQKKYKEAR 84
                6899999999999997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.1e-06    0.0063       6      78 ..       4      84 ..       1      85 [] 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5.1e-06
                HHHHHHHHHHCCC-ST-HHHHCHHH.HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHC CS
   PF12895.2  6 knAlflaekllaespkdpedaylya.lAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAi 78
                + A+ + ek++   +  p+ a +++ lA  l ++++y++A  l+++        l +++++ ++    lA  l +++ky+eA+
  MMETSP0890-20130614|7840_1  4 ERAIEIWEKVHGPIH--PDLATWLNnLAGLLRNQAQYDEAKPLCERsieiseRTLGPNHPDVAIslnNLAGLLKEQKKYKEAR 84
                556666666666543..6889999889**********9999999999888888888888888884444457777899999996 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.4     3e+03      18      26 ..       4      12 ..       3      13 .. 0.66
   2 !   10.7   0.0   0.00026      0.32       4      32 ..      25      53 ..      21      55 .. 0.90
   3 ?    2.6   0.0       0.1   1.2e+02       4      20 ..      67      83 ..      64      85 .] 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.4
                HHHHHHHH- CS
   PF13181.1 18 dkAkeylek 26
                + A+e  ek
  MMETSP0890-20130614|7840_1  4 ERAIEIWEK 12
                567777777 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00026
                TTT---HHHHTT-HHHHHHHHH---HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelkp 32
                ++nl+ ++r+  +yd+Ak   e+ +e++ 
  MMETSP0890-20130614|7840_1 25 LNNLAGLLRNQAQYDEAKPLCERSIEISE 53
                569999********************986 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.1
                TTT---HHHHTT-HHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkA 20
                ++nl+ ++++ ++y++A
  MMETSP0890-20130614|7840_1 67 LNNLAGLLKEQKKYKEA 83
                78999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.91
# Mc/sec: 223.84
//
Query:       MMETSP0890-20130614|7950_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.2  22.6         45    3.3  15.6    2.7  1  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  15.6    0.0033        45      14      35 ..      21      42 ..       2      52 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0033
   PF04886.7 14 PTgqPtaqPTdqPtaqPtdaPt 35
                PT +Pt+ P++ P++ Pt+aPt
  MMETSP0890-20130614|7950_1 21 PTFAPTPIPSAVPSSVPTTAPT 42
                4556666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.80
# Mc/sec: 161.75
//
Query:       MMETSP0890-20130614|7966_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   38.2   2.0    1.7e-05   24.7   0.1    2.1  2  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   3.5e-06     0.048     112     125 .]       2      15 ..       1      15 [. 0.94
   2 !   24.7   0.1   1.3e-09   1.7e-05       2      32 ..      44      73 ..      43      74 .] 0.93

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.5e-06
                 ----EEEESS-S-- CS
  PF02469.17 112 tngvihvidkvLlp 125
                 +ngv+h+id+vL+p
  MMETSP0890-20130614|7966_1   2 SNGVVHIIDTVLIP 15 
                 7***********98 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1.3e-09
                HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE- CS
  PF02469.17  2 efstfvsllekaglaeeLnkkqgglTvFaPt 32
                ++st+v+++ +a+la++L + +g++TvFaPt
  MMETSP0890-20130614|7966_1 44 DLSTLVTAVVTADLADTL-SGDGPFTVFAPT 73
                79****************.777********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 272.82
//
Query:       MMETSP0890-20130614|7997_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 889.65
//
Query:       MMETSP0890-20130614|7998_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 331.80
//
Query:       MMETSP0890-20130614|8003_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-12   46.1   0.0    3.3e-12   46.1   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    1.4e-06   27.7   0.0    1.6e-06   27.6   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   4.8e-16   3.3e-12      26      66 ..       2      42 ..       1      43 [] 0.58

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 4.8e-16
   PF13306.1 26 IgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
                Ig+yaF +c+sl+++ lp  lt+ig+ aF++csslt +t+p
  MMETSP0890-20130614|8003_1  2 IGDYAFDDCTSLNQLILPAGLTTIGDGAFYGCSSLTYLTLP 42
                56666666666666666666666666666666666666655 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.4e-10   1.6e-06      16      56 ..       2      41 ..       1      43 [] 0.95

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.4e-10
   PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                i+d aF ++++L  L L    l++i ++af g+ sL++L L
  MMETSP0890-20130614|8003_1  2 IGDYAFDDCTSLNQLILP-AGLTTIGDGAFYGCSSLTYLTL 41
                8999**************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       123  (0.00899649); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.39s 00:00:00.66 Elapsed: 00:00:00.57
# Mc/sec: 177.66
//
Query:       MMETSP0890-20130614|8021_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   14.4   8.5      0.013   14.0   5.9    1.1  1  PF04625.8  DEC-1 protein, N-terminal region
      0.011   15.5   0.8      0.012   15.3   0.5    1.2  1  PF06679.7  Protein of unknown function (DUF1180)
      0.017   13.7   0.0      0.022   13.3   0.0    1.1  1  PF04295.8  D-galactarate dehydratase / Altronate hydrolase, C terminus
      0.044   13.6   0.3      0.084   12.7   0.2    1.5  1  PF06236.6  Tyrosinase co-factor MelC1
      0.088   13.0   2.5       0.11   12.6   1.7    1.2  1  PF01254.13 Nuclear transition protein 2
       0.94    8.5   5.0        1.1    8.3   3.5    1.3  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal
       0.97    8.4   4.6        1.1    8.3   3.2    1.2  1  PF11593.3  Mediator complex subunit 3 fungal
        1.7    7.6   5.0        2.7    6.9   3.5    1.4  1  PF01299.12 Lysosome-associated membrane glycoprotein (Lamp)


Domain annotation for each model (and alignments):
>> PF04625.8  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   5.9   7.9e-06     0.013     103     136 ..      36      67 ..      15      80 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.9e-06
   PF04625.8 103 lgaaapvpapapaaaaapaaasapaadspaasvp 136
                   a+ap p+papa+a++pa  +apa+++ +++  
  MMETSP0890-20130614|8021_1  36 STASAPAPTPAPAPAPTPA--PAPAPSPVSTTTK 67 
                 3344444444444444444..4444444333333 PP

>> PF06679.7  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   7.1e-06     0.012      30      57 ..      32      73 ..      12     135 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7.1e-06
   PF06679.7 30 lseaesaassePeprtlsalpPgptpa..............n 57
                ls a++a+++ P+p   +a++P+p+pa              +
  MMETSP0890-20130614|8021_1 32 LSAASTASAPAPTPAPAPAPTPAPAPApspvstttkdsihsT 73
                344445555555555555555555555655544444444440 PP

>> PF04295.8  D-galactarate dehydratase / Altronate hydrolase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05     0.022      41      90 ..      98     149 ..      85     152 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-05
   PF04295.8  41 fkeeal..klpnvdgvvalthqyGcgqlgedlellrrtlaglakhpNvagvl 90 
                 f+++++  + ++v++++ +  ++   + g+dl +l+r+l+++++hp va vl
  MMETSP0890-20130614|8021_1  98 FAKKNEesTKVQVKKTHSMSSHNAAIVDGRDLIVLKRILRDYGNHPDVATVL 149
                 3333222245699*******999**************************998 PP

>> PF06236.6  Tyrosinase co-factor MelC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.9e-05     0.084      11      85 ..      42     134 ..      31     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.9e-05
   PF06236.6  11 aglaaaaeaaaaaeaaahpgesaarga...................esaapaafdEvykGRriqgrtvaaggaghhgggyaVlvDGreLHvmrn 85 
                 a++ a+a+a++ a a+a p++++++++                   +++  +++d ++  +  + ++v+  +++  ++  a +vDGr+L v+++
  MMETSP0890-20130614|8021_1  42 APTPAPAPAPTPAPAPA-PSPVSTTTKdsihstdvafkpttdgwgfSPKYANSWDRIFAKKNEESTKVQVKKTHSMSSHNAAIVDGRDLIVLKR 134
                 44444444333222222.2222222223455666666666999998999999****************9999999**************99986 PP

>> PF01254.13  Nuclear transition protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.7   6.7e-05      0.11      48     132 ..      33     118 ..      17     122 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.7e-05
  PF01254.13  48 ssrsrsssqspashrsssgrqsqspspsPppkrrkktmhshksPsrPttrscscsknrkn.leGkvkkrkavkrskqvyktkrrss 132
                 s+ s +s+ +p+  ++++   + +p+psP     k ++hs     +Ptt     s +  n  +    k+ +   + qv kt   ss
  MMETSP0890-20130614|8021_1  33 SAASTASAPAPTPAPAPAPTPAPAPAPSPVSTTTKDSIHSTDVAFKPTTDGWGFSPKYANsWDRIFAKKNEESTKVQVKKTHSMSS 118
                 56678888889999999999999************************998766555555505555566666666678888888887 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.5   0.00066       1.1     219     253 ..      32      72 ..      19     121 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00066
                 SC--XXXXXXXXXXX......XXXXXXXXX........XXX CS
  PF01213.14 219 ksalaavsasktaaP......ppPpppppPsvdtikdsves 253
                  sa+++ sa +++        p+P+p+p+P ++t kds +s
  MMETSP0890-20130614|8021_1  32 LSAASTASAPAPTPApapaptPAPAPAPSPVSTTTKDSIHS 72 
                 44444444433332223232233333333333344444443 PP

>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.2   0.00064       1.1     133     185 ..      28      76 ..       4     128 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00064
   PF11593.3 133 kksaksnaattsstanTpaaasvkkansasaPnatagvGsaattaaisattat 185
                   ++ s a t+s+ a+Tpa a+  ++  a+aP +     s++t+ +i++t  +
  MMETSP0890-20130614|8021_1  28 FLRTLSAASTASAPAPTPAPAPAPTPAPAPAPSPV----STTTKDSIHSTDVA 76 
                 44677888888888999999888887777776652....33333334443322 PP

>> PF01299.12  Lysosome-associated membrane glycoprotein (Lamp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.5    0.0016       2.7      77     104 ..      31      61 ..      13      76 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0016
  PF01299.12  77 eetrceed..pspttsatpvPsPtpvp.ssp 104
                 + ++++    p+pt++++p+P+P+p+p +sp
  MMETSP0890-20130614|8021_1  31 TLSAASTAsaPAPTPAPAPAPTPAPAPaPSP 61 
                 3444443335556654333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.81
# Mc/sec: 470.40
//
Query:       MMETSP0890-20130614|8065_1  [L=774]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00043   19.9  11.5    0.00085   18.9   8.0    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0011   18.5  11.8     0.0021   17.6   8.2    1.5  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
       0.38   10.3  12.5       0.74    9.4   8.6    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   8.0   1.9e-07   0.00085       3      44 ..     332     382 ..     330     384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-07
   PF13923.1   3 fsCpiCleelen.pviltpCgHlyCkkCieqwleks......kkkC..PiC 44 
                  sC iCl++ +   + +t+CgH +C +C+ q+ ++       +++C  P+C
  MMETSP0890-20130614|8065_1 332 ASCAICLSDESTnFLSVTNCGHWCCVECFAQYTHSLacngisNATCpgPLC 382
                 58*****98866444469**************9987888888889944466 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   8.2   4.7e-07    0.0021       2      45 ..     333     384 ..     332     385 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.7e-07
   PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrs..sn.....sC..PlCrk 45 
                 +CaiCl++ s  + + +++CgH +++eC++++ +s  +n     +C  PlC +
  MMETSP0890-20130614|8065_1 333 SCAICLSDES-TNFLSVTNCGHWCCVECFAQYTHSlaCNgisnaTCpgPLCTT 384
                 7*******74.45555888*************876542234556**6667765 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   8.6   0.00016      0.74       1      39 [.     334     378 ..     334     382 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00016
                 -TTTSSS-SSEE..BSCTS-EE-CHHHHHHHCS.....T-----T CS
  PF00097.20   1 CpiCleeakepn.elleCkHsfCskCirkilks.....rkkvkCP 39 
                 C+iCl+  +++   +++C+H +C +C  +++ s      ++ +CP
  MMETSP0890-20130614|8065_1 334 CAICLSDESTNFlSVTNCGHWCCVECFAQYTHSlacngISNATCP 378
                 *****9999988899*****************9998875555686 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       678  (0.0495904); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.41s 00:00:01.54 Elapsed: 00:00:01.12
# Mc/sec: 1641.40
//
Query:       MMETSP0890-20130614|8082_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-05   22.9   0.0    0.00013   21.7   0.0    1.6  1  PF01627.18 Hpt domain


Domain annotation for each model (and alignments):
>> PF01627.18  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   9.8e-09   0.00013      35      86 ..      68     116 ..      66     124 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 9.8e-09
                 HHHHH---TTT---HHHHHHHHHHHHHHHCTCTTSSHHHHHHHHHHHHHHHH CS
  PF01627.18  35 aaHtLKGsagmlGltalaelahelEqllkagrdgeldlllqaldelkaelea 86 
                  aH++KG + +lG+ +la+ a ++E+l    +++    + + + +++++ ++
  MMETSP0890-20130614|8082_1  68 VAHSVKGLCLSLGFARLAKYAKAVESLKVDIEPDD---IPEIIKVMQNLFDE 116
                 69******************************999...55555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      594  (0.0434465); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.73
# Mc/sec: 420.18
//
Query:       MMETSP0890-20130614|8101_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   53.7   0.0    1.5e-14   53.6   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    2.1e-06   27.2   0.0    2.3e-06   27.1   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   2.2e-18   1.5e-14      13      66 ..       1      54 [.       1      55 [] 0.96

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 2.2e-18
   PF13306.1 13 nltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitip 66
                n+ts+ +p  +t+Ig  aF++c+sl ++tlp  lt+ig  aF++c+slt++t+p
  MMETSP0890-20130614|8101_1  1 NITSVVLPAGLTTIGRGAFRGCTSLIQLTLPVGLTTIGPLAFYECTSLTQLTLP 54
                799************************************************998 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.4e-10   2.3e-06       2      56 ..       1      53 [.       1      55 [] 0.94

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 3.4e-10
   PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                n++++ L    l++i+ gaF g+++L  L L    l++i p af  ++sL++L L
  MMETSP0890-20130614|8101_1  1 NITSVVLPAG-LTTIGRGAFRGCTSLIQLTLP-VGLTTIGPLAFYECTSLTQLTL 53
                5678888889.*********************.********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.35s 00:00:00.63 Elapsed: 00:00:00.82
# Mc/sec: 160.73
//
Query:       MMETSP0890-20130614|8141_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-19   67.7   0.6    8.6e-09   34.9   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
      3e-18   65.4   0.1    3.2e-18   65.3   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    2.3e-10   39.8   0.2    2.6e-10   39.6   0.1    1.0  1  PF13414.1  TPR repeat
    3.5e-10   38.9   2.3    9.8e-05   21.6   0.3    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.8e-09   36.6   1.9    0.00065   19.3   0.2    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.9e-08   34.5   0.1    6.7e-08   32.8   0.1    1.7  1  PF13432.1  Tetratricopeptide repeat
    6.4e-07   28.5   1.3      0.022   14.4   0.1    2.5  2  PF13176.1  Tetratricopeptide repeat
    7.1e-05   22.5   0.7    0.00071   19.2   0.1    2.0  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00011   22.0   0.7      0.004   17.1   0.1    2.7  2  PF13431.1  Tetratricopeptide repeat
    0.00016   21.9   0.2       0.27   11.8   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    0.00019   21.4   0.3         27    4.8   0.1    2.0  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00049   19.5   1.3       0.32   10.7   0.2    2.5  2  PF13181.1  Tetratricopeptide repeat
     0.0028   17.9   1.5          1    9.8   0.1    2.7  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.5   0.6        1.5    8.6   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
      0.062   13.6   0.0        3.6    8.1   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
      0.082   13.0   0.2       0.19   11.8   0.0    1.7  2  PF07554.8  Uncharacterised Sugar-binding Domain


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     1e-11   8.6e-09      13      42 .]       3      32 ..       1      32 [. 0.94
   2 !   31.7   0.1   9.7e-11   8.2e-08       1      29 [.      33      61 .]      33      61 .] 0.97

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1e-11
   PF13374.1 13 rargryeeAlaleeealairrrllGddHPd 42
                 ++g+y+eA +l+ +a +i +++lG++HP+
  MMETSP0890-20130614|8141_1  3 EKQGKYDEAKPLYDRAIEILEKVLGPNHPN 32
                589**************************5 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 9.7e-11
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeeal 29
                +a++l+nLAl+l+a+++y eA++l++ al
  MMETSP0890-20130614|8141_1 33 VATTLSNLALLLSAQKKYKEARPLLQHAL 61
                89************************997 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.1   3.7e-21   3.2e-18      15      73 ..       2      61 .]       1      61 [] 0.97

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 3.7e-21
   PF13424.1 15 lrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                l+++g+ydeA  ly +a+e+  ++lg++hp++a++l nla l+ a+++y+eA+++l+ Al
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLYDRAIEIlEKVLGPNHPNVATTLSNLALLLSAQKKYKEARPLLQHAL 61
                689*****************99999*********************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1     3e-13   2.6e-10      15      65 ..       4      61 .]       1      61 [] 0.85

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3e-13
   PF13414.1 15 kegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAl 65
                k+g+ydeA  +y++A+e+      pn+++    ++nlAl++  +  +y+eA+  +++Al
  MMETSP0890-20130614|8141_1  4 KQGKYDEAKPLYDRAIEILekvlgPNHPNvatTLSNLALLLSAQK-KYKEARPLLQHAL 61
                89***************855555577777666***********86.8*****9999997 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.3   1.1e-07   9.8e-05      11      30 ..       2      21 ..       1      24 [. 0.91
   2 !   17.4   0.0   2.5e-06    0.0021       2      28 ..      35      61 .]      34      61 .] 0.91

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.1e-07
                HHHTT-HHHHHHHHHHHHHH CS
  PF00515.23 11 ylklgkydeAleyyekALel 30
                + k+gkydeA   y++A+e+
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLYDRAIEI 21
                579****************9 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 2.5e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekAL 28
                 +l nl++++  ++ky+eA    + AL
  MMETSP0890-20130614|8141_1 35 TTLSNLALLLSAQKKYKEARPLLQHAL 61
                6899***************99999887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   7.6e-07   0.00065      11      30 ..       2      21 ..       1      24 [. 0.91
   2 !   17.3   0.1   3.2e-06    0.0028       2      28 ..      35      61 .]      34      61 .] 0.93

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.6e-07
                HHHTT-HHHHHHHHHHHHHH CS
  PF07719.12 11 yyklgdyeeAleafekAlel 30
                ++k+g+y+eA+ ++++A+e+
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLYDRAIEI 21
                689***************98 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.2e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                  l nl+l++ ++++y+eA+ +++ Al
  MMETSP0890-20130614|8141_1 35 TTLSNLALLLSAQKKYKEARPLLQHAL 61
                5799********************998 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   7.9e-11   6.7e-08       7      58 ..       2      61 .]       1      61 [] 0.93

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 7.9e-11
   PF13432.1  7 llraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58
                l ++G+ydeA +++++a++          P  a  l +la +l ++++++eA+ ll++al
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLYDRAIEILekvlgpnhPNVATTLSNLALLLSAQKKYKEARPLLQHAL 61
                5689**********99998888999999999*************************9986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   8.5e-05     0.073      10      30 ..       3      23 ..       2      32 .. 0.78
   2 !   14.4   0.1   2.6e-05     0.022       1      26 [.      36      61 .]      36      61 .] 0.94

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.5e-05
   PF13176.1 10 srlgdyekAielyeraLaltk 30
                +++g+y++A  ly ra+++ +
  MMETSP0890-20130614|8141_1  3 EKQGKYDEAKPLYDRAIEILE 23
                689************776544 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.6e-05
   PF13176.1  1 allnLarlysrlgdyekAielyeraL 26
                +l+nLa l s++ +y++A  l++ aL
  MMETSP0890-20130614|8141_1 36 TLSNLALLLSAQKKYKEARPLLQHAL 61
                79*********************955 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   8.3e-07   0.00071      15      39 ..       2      26 ..       1      32 [. 0.93
   2 ?    2.3   0.0      0.16   1.4e+02      16      31 ..      45      60 ..      32      61 .] 0.57

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 8.3e-07
                HHHTT-HHHHHHHHHHHHHHHHHHH CS
  PF04212.13 15 aDeagkyeeAlelYkeAlelLlqal 39
                 +++gky+eA  lY  A+e+L+++l
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLYDRAIEILEKVL 26
                589*******************986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.16
                HHTT-HHHHHHHHHHH CS
  PF04212.13 16 DeagkyeeAlelYkeA 31
                  ++ky eA  l ++A
  MMETSP0890-20130614|8141_1 45 SAQKKYKEARPLLQHA 60
                4455666666555555 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.27   2.3e+02      23      33 ..       2      12 ..       1      13 [. 0.86
   2 !   17.1   0.1   4.6e-06     0.004       2      33 ..      15      54 ..      14      55 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.27
   PF13431.1 23 llnnGdleeAe 33
                l ++G+++eA+
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAK 12
                5689*****97 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.6e-06
   PF13431.1  2 yekalel........dPnnadaynnLAelllnnGdleeAe 33
                y +a+e+        +Pn a  + nLA+ll+++++++eA+
  MMETSP0890-20130614|8141_1 15 YDRAIEIlekvlgpnHPNVATTLSNLALLLSAQKKYKEAR 54
                666666654444332577788888***************8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00032      0.27      11      38 ..       2      34 ..       1      39 [. 0.75
   2 !    9.4   0.1    0.0019       1.6       3      28 ..      36      61 .]      33      61 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00032
   PF13428.1 11 llalGdpdeAiallrrala.....laPddaeal 38
                l+ +G +deA  l++ra++     l+P+++ + 
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLYDRAIEilekvLGPNHPNVA 34
                6789999********999866666667776655 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0019
   PF13428.1  3 allalarallalGdpdeAiallrral 28
                +l  la +l a+  ++eA+ ll+ al
  MMETSP0890-20130614|8141_1 36 TLSNLALLLSAQKKYKEARPLLQHAL 61
                5778******************9875 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.032        27      68      81 ..       2      15 ..       1      17 [. 0.80

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.032
                HHHTT-HHHHCCCH CS
   PF12895.2 68 llklgkydeAiavL 81
                l+k+gkydeA  ++
  MMETSP0890-20130614|8141_1  2 LEKQGKYDEAKPLY 15
                6899*****97666 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00037      0.32      12      30 ..       3      21 ..       2      27 .. 0.89
   2 !    7.4   0.0    0.0044       3.8       3      28 ..      36      61 .]      34      61 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00037
                HHTT-HHHHHHHHH---HH CS
   PF13181.1 12 rqlGdydkAkeylekalel 30
                ++ G+yd+Ak  + +a+e+
  MMETSP0890-20130614|8141_1  3 EKQGKYDEAKPLYDRAIEI 21
                679**********999997 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0044
                -TTT---HHHHTT-HHHHHHHHH--- CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                ++ nl++++   ++y++A   l+ al
  MMETSP0890-20130614|8141_1 36 TLSNLALLLSAQKKYKEARPLLQHAL 61
                5679**************99999886 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0012         1      11      28 ..       3      20 ..       1      26 [. 0.83
   2 ?    6.6   0.1     0.012        10       4      24 ..      38      58 ..      36      61 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0012
                HHHHHHHHHHHHHHHHHH CS
   PF13174.1 11 yklgdtdeAlealerlik 28
                +k+g++deA+ +++r i+
  MMETSP0890-20130614|8141_1  3 EKQGKYDEAKPLYDRAIE 20
                578899999999999886 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  4 yklalsyyklgdtdeAleale 24
                 +lal++ +++++ eA+ +l+
  MMETSP0890-20130614|8141_1 38 SNLALLLSAQKKYKEARPLLQ 58
                589******99******9998 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.013        11      14      25 ..       5      16 ..       4      24 .. 0.86
   2 ?    8.6   0.0    0.0017       1.5       7      25 ..      40      58 ..      36      61 .] 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.013
                TT-HHHHHHH.. CS
   PF07720.7 14 kkkyqeArelfs 25
                ++ky+eA  l++
  MMETSP0890-20130614|8141_1  5 QGKYDEAKPLYD 16
                8******88865 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0017
                HHHHHHHTT-HHHHHHH.. CS
   PF07720.7  7 lAaefynkkkyqeArelfs 25
                lA  + ++kky eAr l++
  MMETSP0890-20130614|8141_1 40 LALLLSAQKKYKEARPLLQ 58
                6777779********9988 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13   1.1e+02      14      26 .]       5      17 ..       2      17 .. 0.84
   2 ?    8.1   0.0    0.0043       3.6       3      25 ..      36      58 ..      34      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.13
                -------HHHHHT CS
   PF07721.9 14 lGdldeAraller 26
                +G +deA  l +r
  MMETSP0890-20130614|8141_1  5 QGKYDEAKPLYDR 17
                9******988876 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0043
                HH---HHHHHH-------HHHHH CS
   PF07721.9  3 allaLArallalGdldeAralle 25
                +l++LA +l a+  + eAr ll+
  MMETSP0890-20130614|8141_1 36 TLSNLALLLSAQKKYKEARPLLQ 58
                799****************9996 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.19      12      46 ..       7      34 ..       2      39 .. 0.79
   2 ?   -2.2   0.0       5.4   4.6e+03      21      27 ..      47      53 ..      45      60 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00023
                HHHTC-HHHHHHHHHHHHHHHHHH...TSTTTTCC CS
   PF07554.8 12 nysnadtekknaynnAitaAkaiLnntngpnatqe 46
                +y    +e+k +y+ Ai++ +++L ++    ++++
  MMETSP0890-20130614|8141_1  7 KY----DEAKPLYDRAIEILEKVLGPNH---PNVA 34
                55....999***************8866...5554 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 5.4
                HHHHHHH CS
   PF07554.8 21 knaynnA 27
                ++ y++A
  MMETSP0890-20130614|8141_1 47 QKKYKEA 53
                5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.33u 0.29s 00:00:00.62 Elapsed: 00:00:00.87
# Mc/sec: 168.02
//
Query:       MMETSP0890-20130614|8144_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 332.13
//
Query:       MMETSP0890-20130614|8157_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   15.8   0.0      0.006   15.8   0.0    1.1  1  PF13343.1 Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.018   14.5   0.0    1.3  1  PF13531.1 Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> PF13343.1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.8e-07     0.006     184     217 ..       4      41 ..       1      59 [. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8.8e-07
   PF13343.1 184 akkkelakafidfllspevqailaeagf.kfPvn...t 217
                  +k +l+kaf++++ls+++q+ l++ +f   P++   +
  MMETSP0890-20130614|8157_1   4 GEKGALLKAFVEYVLSDDGQELLTKYNFeGVPADvlaV 41 
                 46889**********************98899854332 PP

>> PF13531.1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.6e-06     0.018     206     231 .]       7      32 ..       2      32 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.6e-06
   PF13531.1 206 peaAraFlafLrspeaqailrkyGfr 231
                  +  +aF+++++s+++q+ l+ky f+
  MMETSP0890-20130614|8157_1   7 GALLKAFVEYVLSDDGQELLTKYNFE 32 
                 56779******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.31s 00:00:00.64 Elapsed: 00:00:00.57
# Mc/sec: 309.87
//
Query:       MMETSP0890-20130614|8222_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.77
# Mc/sec: 183.62
//
Query:       MMETSP0890-20130614|8243_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   12.7  11.8      0.068   12.4   8.2    1.1  1  PF04652.11 Vta1 like
          1    8.3  12.9        1.5    7.8   9.0    1.3  1  PF09507.5  DNA polymerase subunit Cdc27
        1.7    8.5   9.3        3.2    7.6   6.4    1.4  1  PF11081.3  Protein of unknown function (DUF2890)
        3.3    7.6   8.3        5.5    6.9   5.7    1.4  1  PF02993.9  Minor capsid protein VI


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   8.2     2e-05     0.068     248     340 ..      75     164 ..      12     188 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
                 XXXXXXXXXXXXXXX.....................................................XXXXXXXXXXXHHHHHH.......... CS
  PF04652.11 248 eseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss.ppsteapssppvqapsapakpslssakPtaqsassaqaqplqsvapqi.aag 340
                 ++e++++++ +P++P     +s ++ +++P +++ee++++ + p +t+a+ssp  +  s  + p+  +++P+ ++ ++++a +++++a ++ aa+
  MMETSP0890-20130614|8243_1  75 DDEEEEEEAVPPPVP---PVKSLEEAKQEPTPQKEEKSQPITaPVPTQAKSSPDPAPAS--SAPAAATSQPATTKPTATPAAAPATKAVPApAAK 164
                 333333344444444...22222222222322222222222222222222222221111..1111122222222222222222222222221111 PP

>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.0   0.00045       1.5     121     218 ..      76     173 ..      52     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00045
   PF09507.5 121 sairgkqagpivnpevkrregvgssplaaeaskalkktangkaaskpsksiaksevksksakktqdssketktektekktsvkaasskkkaseksnam 218
                 + ++ ++a+p   p vk+ e+++++p++++++k+++ ta+  +++k+s+++a +++++ +a+++  ++k+t t+++  +t+  +a+  k+++++++ m
  MMETSP0890-20130614|8243_1  76 DEEEEEEAVPPPVPPVKSLEEAKQEPTPQKEEKSQPITAPVPTQAKSSPDPAPASSAPAAATSQPATTKPTATPAAAPATKAVPAPAAKAKNDEAQEM 173
                 5555666666666667777766677777777788888888888999999999999*******9999******99999999966666666555555555 PP

>> PF11081.3  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.4   0.00093       3.2      32     110 ..      57     162 ..      36     207 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00093
   PF11081.3  32 seeeeeledwedSldeedeeaeeveeetaak.....skapssssksssqetksapprpaa.rrpsrRWdetgraaapttaakkk.....................a 110
                  e+   l   +dS      ++ee+ee+++++     s  +++++++ ++e+ks p + +   ++++  d    + ap++a+++                      a
  MMETSP0890-20130614|8243_1  57 EEDGHVLATVDDSGVAYGDDEEEEEEAVPPPvppvkSLEEAKQEPTPQKEEKSQPITAPVpTQAKSSPDPAPASSAPAAATSQPattkptatpaaapatkavpapA 162
                 3344444444666555544555555555544666666666666666666666666666666666666666666666666555552333333333333333443332 PP

>> PF02993.9  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.7    0.0016       5.5     134     208 ..      88     163 ..      45     196 .. 0.48

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0016
   PF02993.9 134 rpeaeetlvpaapepPsleealkqkpapveepveesatavlaldkpvtlelppaeqkapkv.vpqastvvvkrrsR 208
                  p+++  +  +++  P+ ee  +++ apv    ++s + ++a+ +p+ ++++pa +k+ ++  ++++t +v ++  
  MMETSP0890-20130614|8243_1  88 VPPVKSLEEAKQEPTPQKEEKSQPITAPVPTQAKSSPDPAPASSAPAAATSQPATTKPTATpAAAPATKAVPAPAA 163
                 2222222222222224444444333355555555555555566666666666655555555434444444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.43s 00:00:01.20 Elapsed: 00:00:00.97
# Mc/sec: 775.73
//
Query:       MMETSP0890-20130614|8250_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-17   60.7   0.6    9.1e-14   50.7   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    3.3e-12   46.0   0.0    3.3e-12   46.0   0.0    1.1  1  PF13424.1  Tetratricopeptide repeat
    3.7e-05   23.1   0.1    4.6e-05   22.9   0.1    1.2  1  PF07719.12 Tetratricopeptide repeat
    9.5e-05   21.7   0.1    0.00012   21.3   0.1    1.2  1  PF00515.23 Tetratricopeptide repeat
    0.00019   20.8   0.0    0.00021   20.7   0.0    1.1  1  PF13414.1  TPR repeat
    0.00021   20.7   0.0    0.00025   20.4   0.0    1.2  1  PF13176.1  Tetratricopeptide repeat
     0.0025   17.7   0.2     0.0055   16.7   0.0    1.6  2  PF13431.1  Tetratricopeptide repeat
     0.0029   17.1   0.1     0.0035   16.8   0.0    1.1  1  PF13181.1  Tetratricopeptide repeat
     0.0074   16.8   0.0     0.0074   16.8   0.0    1.1  1  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.088   13.3   0.2       0.14   12.7   0.1    1.4  2  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00082       1.1      32      42 .]       2      12 ..       1      12 [. 0.91
   2 !   50.7   0.0   6.6e-17   9.1e-14       1      40 [.      13      52 .]      13      52 .] 0.98

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00082
   PF13374.1 32 rrrllGddHPd 42
                +++++G++HP+
  MMETSP0890-20130614|8250_1  2 WEKVHGPNHPE 12
                79********6 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 6.6e-17
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddH 40
                +a+  nnLA +lr++g+y+eA +l+e+al ir++ lG++H
  MMETSP0890-20130614|8250_1 13 VATVFNNLAGLLRNQGKYDEAKPLQERALKIREEKLGPNH 52
                78999*********************************** PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   2.4e-15   3.3e-12      36      78 .]       4      46 ..       1      52 [] 0.84

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 2.4e-15
   PF13424.1 36 relgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                +++g++hp++a++ nnla l++ +g+ydeA+++ e+Al+i+e+
  MMETSP0890-20130614|8250_1  4 KVHGPNHPEVATVFNNLAGLLRNQGKYDEAKPLQERALKIREE 46
                6779999999999999999999999999999999999999874 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.3e-08   4.6e-05       2      31 ..      15      44 ..      14      47 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.3e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAleld 31
                 + +nl+ +++++g+y+eA+ + e+Al++ 
  MMETSP0890-20130614|8250_1 15 TVFNNLAGLLRNQGKYDEAKPLQERALKIR 44
                6789************************96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   9.1e-08   0.00012       2      32 ..      15      45 ..      14      47 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 9.1e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                 +++nl+ +++++gkydeA    e+AL++++
  MMETSP0890-20130614|8250_1 15 TVFNNLAGLLRNQGKYDEAKPLQERALKIRE 45
                689************************9986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.5e-07   0.00021       2      33 ..      13      44 ..       7      52 .] 0.67

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.5e-07
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld 33
                +A ++++l+  l ++g+ydeA  + e+Al+++
  MMETSP0890-20130614|8250_1 13 VATVFNNLAGLLRNQGKYDEAKPLQERALKIR 44
                46667777777777777777777777777765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.9e-07   0.00025       2      35 ..      17      50 ..      16      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.9e-07
   PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdplda 35
                 +nLa l +++g+y++A  l eraL+++++ l++
  MMETSP0890-20130614|8250_1 17 FNNLAGLLRNQGKYDEAKPLQERALKIREEKLGP 50
                69*********************99999887765 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     4e-06    0.0055       9      33 ..      10      34 ..       8      35 .. 0.92
   2 ?   -1.7   0.0         3   4.1e+03       2       8 ..      37      43 ..      36      47 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P+ a ++nnLA ll n+G+++eA+
  MMETSP0890-20130614|8250_1 10 HPEVATVFNNLAGLLRNQGKYDEAK 34
                788899*****************97 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3
   PF13431.1  2 yekalel 8 
                 e+al++
  MMETSP0890-20130614|8250_1 37 QERALKI 43
                5788886 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.6e-06    0.0035       4      31 ..      17      44 ..      14      47 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.6e-06
                TTT---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                 +nl+ ++r+ G+yd+Ak   e+al++ 
  MMETSP0890-20130614|8250_1 17 FNNLAGLLRNQGKYDEAKPLQERALKIR 44
                689999********************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.4e-06    0.0074       3      25 ..      20      42 ..       5      52 .] 0.57

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.4e-06
   PF13432.1  3 lArallraGdydeAlaaleaala 25
                lA +l ++G+ydeA ++ e+al+
  MMETSP0890-20130614|8250_1 20 LAGLLRNQGKYDEAKPLQERALK 42
                45555555555555555555554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.8   1.1e+04      31      38 ..       7      14 ..       5      16 .. 0.72
   2 ?   12.7   0.1    0.0001      0.14       6      30 ..      19      43 ..      13      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 7.8
   PF13428.1 31 aPddaeal 38
                +P+++e+ 
  MMETSP0890-20130614|8250_1  7 GPNHPEVA 14
                68888875 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.0001
   PF13428.1  6 alarallalGdpdeAiallrralal 30
                 la +l+++G +deA  l +ral+ 
  MMETSP0890-20130614|8250_1 19 NLAGLLRNQGKYDEAKPLQERALKI 43
                69********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 188.80
//
Query:       MMETSP0890-20130614|8272_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-31  106.6   0.0      2e-17   62.7   0.0    1.9  2  PF13424.1  Tetratricopeptide repeat
    9.1e-26   88.8   0.1    1.4e-16   59.6   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.5e-15   56.4   0.8    2.3e-09   36.6   0.1    1.7  2  PF13414.1  TPR repeat
      3e-11   42.3   1.7      4e-06   26.0   0.1    2.1  2  PF00515.23 Tetratricopeptide repeat
    4.1e-09   35.5   0.4    0.00035   20.1   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    4.7e-08   32.1   0.0    1.4e-05   24.4   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.9e-05   23.9   0.3      0.062   12.9   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
      2e-05   24.9   0.1    2.6e-05   24.6   0.0    1.3  1  PF13432.1  Tetratricopeptide repeat
    7.5e-05   22.9   0.0      0.014   15.8   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    9.3e-05   22.2   0.4     0.0011   18.9   0.3    2.5  2  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.024   14.6   0.0    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.096   13.0   0.0       0.21   12.0   0.0    1.6  2  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.8e-20     2e-17      21      78 .]       2      60 ..       1      60 [. 0.97
   2 !   47.3   0.0   1.1e-15   1.3e-12       1      45 [.      24      69 ..      24      70 .] 0.96

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.8e-20
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                ydeA  l+++a+e+  r++g++hpd+a++lnnla l++ +g+ydeA ++ e+A ei ek
  MMETSP0890-20130614|8272_1  2 YDEAKPLFQRAIEInERTYGPNHPDVATTLNNLAGLLANQGKYDEAMPLCERAFEIWEK 60
                9******************************************************9875 PP

  == domain 2    score: 47.3 bits;  conditional E-value: 1.1e-15
   PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdt 45
                hpd+at+lnnla++l  +g+ydeA  l+e+a e+  +++g++hp++
  MMETSP0890-20130614|8272_1 24 HPDVATTLNNLAGLLANQGKYDEAMPLCERAFEIwEKVHGPNHPQV 69
                9*********************************88889*****86 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.3e-09   1.5e-06      17      42 .]       1      26 [.       1      26 [. 0.97
   2 !   59.6   0.0   1.2e-19   1.4e-16       1      42 []      27      68 ..      27      68 .. 0.98

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.3e-09
   PF13374.1 17 ryeeAlaleeealairrrllGddHPd 42
                +y+eA +l+++a +i +r +G++HPd
  MMETSP0890-20130614|8272_1  1 KYDEAKPLFQRAIEINERTYGPNHPD 26
                69***********************8 PP

  == domain 2    score: 59.6 bits;  conditional E-value: 1.2e-19
   PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                +a++lnnLA +l+++g+y+eA +l e+a +i+++++G++HP+
  MMETSP0890-20130614|8272_1 27 VATTLNNLAGLLANQGKYDEAMPLCERAFEIWEKVHGPNHPQ 68
                79***************************************5 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1     2e-12   2.3e-09      18      67 ..       1      57 [.       1      59 [. 0.92
   2 !   23.8   0.0     2e-08   2.3e-05       2      38 ..      27      68 ..      26      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2e-12
   PF13414.1 18 dydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                +ydeA  ++++A+e++     pn+++    ++nlA ++ ++g +y+eA+  +e+A e+
  MMETSP0890-20130614|8272_1  1 KYDEAKPLFQRAIEINertygPNHPDvatTLNNLAGLLANQG-KYDEAMPLCERAFEI 57
                7**************98999988877777*************.6***********986 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2e-08
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae 38
                +A +l++l+  l ++g+ydeA  ++e+A e++     pn+++
  MMETSP0890-20130614|8272_1 27 VATTLNNLAGLLANQGKYDEAMPLCERAFEIWekvhgPNHPQ 68
                6889***************************87777788886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.4e-06    0.0061      16      32 ..       1      17 [.       1      18 [. 0.94
   2 !   26.0   0.1   3.5e-09     4e-06       1      30 [.      28      57 ..      28      60 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.4e-06
                -HHHHHHHHHHHHHHHT CS
  PF00515.23 16 kydeAleyyekALelnP 32
                kydeA   +++A+e+n+
  MMETSP0890-20130614|8272_1  1 KYDEAKPLFQRAIEINE 17
                8**************96 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 3.5e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                a +l+nl+ ++ ++gkydeA   +e+A e+
  MMETSP0890-20130614|8272_1 28 ATTLNNLAGLLANQGKYDEAMPLCERAFEI 57
                5689***********************998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.7e-05      0.03      16      32 ..       1      17 [.       1      19 [. 0.92
   2 !   20.1   0.0     3e-07   0.00035       2      30 ..      29      57 ..      28      57 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.7e-05
                -HHHHHHHHHHHHHH-T CS
  PF07719.12 16 dyeeAleafekAleldP 32
                +y+eA+ +f++A+e++ 
  MMETSP0890-20130614|8272_1  1 KYDEAKPLFQRAIEINE 17
                6**************97 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 3e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  l+nl+ +++++g+y+eA  ++e+A e+
  MMETSP0890-20130614|8272_1 29 TTLNNLAGLLANQGKYDEAMPLCERAFEI 57
                679***********************885 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0     0.009        10      15      31 ..       2      18 ..       1      25 [. 0.65
   2 !   24.4   0.0   1.2e-08   1.4e-05       1      30 [.      30      59 ..      30      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.009
   PF13176.1 15 yekAielyeraLaltkd 31
                y++A  l++ra+++ + 
  MMETSP0890-20130614|8272_1  2 YDEAKPLFQRAIEINER 18
                78888888885555444 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1.2e-08
   PF13176.1  1 allnLarlysrlgdyekAielyeraLaltk 30
                +l+nLa l  ++g+y++A  l+era ++++
  MMETSP0890-20130614|8272_1 30 TLNNLAGLLANQGKYDEAMPLCERAFEIWE 59
                79**********************655554 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00069      0.78      16      32 ..       1      17 [.       1      20 [. 0.89
   2 !   12.9   0.0   5.5e-05     0.062       3      30 ..      30      57 ..      28      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00069
                -HHHHHHHHH---HHHH CS
   PF13181.1 16 dydkAkeylekalelkp 32
                +yd+Ak  +++a+e++ 
  MMETSP0890-20130614|8272_1  1 KYDEAKPLFQRAIEINE 17
                69*************98 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 5.5e-05
                -TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalel 30
                +++nl+ ++++ G+yd+A+   e+a e+
  MMETSP0890-20130614|8272_1 30 TLNNLAGLLANQGKYDEAMPLCERAFEI 57
                689****************999999886 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.3e-08   2.6e-05      12      57 ..       1      54 [.       1      67 [. 0.95

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.3e-08
   PF13432.1 12 dydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57
                +ydeA +++++a++ +        P+ a  l +la +l+ +g++deA  l ++a
  MMETSP0890-20130614|8272_1  1 KYDEAKPLFQRAIEINertygpnhPDVATTLNNLAGLLANQGKYDEAMPLCERA 54
                79*********************************************9998886 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.017        19      17      32 ..       2      17 ..       1      31 [. 0.70
   2 !   15.8   0.0   1.2e-05     0.014       3      30 ..      30      57 ..      27      70 .] 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.017
   PF13428.1 17 pdeAiallrralalaP 32
                +deA  l++ra++ + 
  MMETSP0890-20130614|8272_1  2 YDEAKPLFQRAIEINE 17
                89**********9542 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.2e-05
   PF13428.1  3 allalarallalGdpdeAiallrralal 30
                +l  la +l+++G +deA+ l++ra + 
  MMETSP0890-20130614|8272_1 30 TLNNLAGLLANQGKYDEAMPLCERAFEI 57
                46689********************873 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   9.3e-07    0.0011       1      32 [.       8      47 ..       8      48 .. 0.86
   2 ?   -0.7   0.0       1.7   1.9e+03       1       9 [.      50      58 ..      50      69 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 9.3e-07
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeA 32
                l+++a+e++     Pn+   a  +nnLA ll+n+G+++eA
  MMETSP0890-20130614|8272_1  8 LFQRAIEINertygPNHpdvATTLNNLAGLLANQGKYDEA 47
                6899999998889966655589999*************99 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.7
   PF13431.1  1 lyekaleld 9 
                l+e+a e+ 
  MMETSP0890-20130614|8272_1 50 LCERAFEIW 58
                688888875 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.024       5      51 ..       2      56 ..       1      69 [. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.1e-05
                HHHHHHHHHHHCCC-ST....-H.HHH.CHHHHHHHHHH---HHHHHHHHHC..T CS
   PF12895.2  5 yknAlflaekllaespk....dp.eda.ylyalAlclylngeykrAyellrk..l 51
                y++A  l++++++ + +    ++ + a  l +lA  l ++g+y++A+ l+++  +
  MMETSP0890-20130614|8272_1  2 YDEAKPLFQRAIEINERtygpNHpDVAtTLNNLAGLLANQGKYDEAMPLCERafE 56
                888999999999999887776324444255559*************999977662 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         8   9.1e+03      17      25 ..       2      10 ..       2      11 .. 0.71
   2 ?   12.0   0.0   0.00018      0.21       3      26 .]      30      53 ..      28      53 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 8
                ----HHHHH CS
   PF07721.9 17 ldeAralle 25
                +deA  l++
  MMETSP0890-20130614|8272_1  2 YDEAKPLFQ 10
                589987776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00018
                HH---HHHHHH-------HHHHHT CS
   PF07721.9  3 allaLArallalGdldeAraller 26
                +l +LA +l+ +G +deA  l er
  MMETSP0890-20130614|8272_1 30 TLNNLAGLLANQGKYDEAMPLCER 53
                5679**************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 250.37
//
Query:       MMETSP0890-20130614|8313_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.52
# Mc/sec: 829.51
//
Query:       MMETSP0890-20130614|8341_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 335.49
//
Query:       MMETSP0890-20130614|8386_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-10   37.6   0.6    4.4e-07   29.1   0.0    2.2  2  PF13516.1  Leucine Rich repeat
    7.7e-07   28.4   0.2    1.8e-06   27.2   0.1    1.6  1  PF12799.2  Leucine Rich repeats (2 copies)
    0.00049   19.6   0.4      0.019   14.5   0.3    2.0  1  PF13855.1  Leucine rich repeat
    0.00095   18.7   0.0        1.3    9.2   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
     0.0011   18.6   0.1        1.5    9.2   0.0    2.3  2  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.04   14.3   0.0        2.1    8.8   0.1    2.1  2  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.9e-10   4.4e-07       1      24 []       9      32 ..       9      32 .. 0.95
   2 !    6.9   0.2    0.0031         7       1      15 [.      37      51 ..      37      59 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.9e-10
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                +++L++L L++N igdeG++a+a+
  MMETSP0890-20130614|8386_1  9 NTSLQELYLGYNEIGDEGAKAIAE 32
                789*******************95 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0031
   PF13516.1  1 lknLtsLdLsnNqig 15
                +++L++L L +N+i 
  MMETSP0890-20130614|8386_1 37 NTSLKTLWLKYNNIK 51
                789**********94 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   8.1e-10   1.8e-06       1      38 [.      10      52 ..      10      58 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 8.1e-10
   PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
                t+L++L+L +N I d     + + l+  ++LktL+L +N+i +
  MMETSP0890-20130614|8386_1 10 TSLQELYLGYNEIGDegakaIAEALGTNTSLKTLWLKYNNIKE 52
                79***********77676777777****************975 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   8.4e-06     0.019      20      61 .]       5      50 ..       2      50 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.4e-06
   PF13855.1 20 aFkglsnLkvLdLsgnnlk....sispeafkgLpsLreLnLsgNrl 61
                a++  ++L++L+L++n++        +ea+   +sL+ L L++N++
  MMETSP0890-20130614|8386_1  5 ALGTNTSLQELYLGYNEIGdegaKAIAEALGTNTSLKTLWLKYNNI 50
                6777899999999999994344444667899999999999999997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00057       1.3       1      13 [.      11      23 ..      11      36 .. 0.82
   2 !    7.8   0.1    0.0017       3.8       1      14 [.      39      52 ..      39      59 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00057
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L+eL+L +N + 
  MMETSP0890-20130614|8386_1 11 SLQELYLGYNEIG 23
                7*********997 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0017
                TESEEEETSSBCBC CS
  PF00560.28  1 nLeeLdLsgNnlts 14
                +L++L L +Nn+++
  MMETSP0890-20130614|8386_1 39 SLKTLWLKYNNIKE 52
                79*********986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00066       1.5       1      14 [.      10      23 ..      10      26 .. 0.89
   2 !    7.4   0.1    0.0025       5.8       1      15 [.      38      52 ..      38      55 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00066
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++L+eL+L +n++ 
  MMETSP0890-20130614|8386_1 10 TSLQELYLGYNEIG 23
                69*********985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0025
   PF13504.1  1 pnLkeLdLsgnrLts 15
                ++Lk+L L +n++++
  MMETSP0890-20130614|8386_1 38 TSLKTLWLKYNNIKE 52
                69*********9975 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.041        93       1      15 [.      11      25 ..      11      27 .. 0.84
   2 ?    8.8   0.1   0.00093       2.1       1      16 [.      39      54 ..      39      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.041
   PF07723.8  1 sLKtLhLdsvdfddd 15
                sL  L+L ++++ d+
  MMETSP0890-20130614|8386_1 11 SLQELYLGYNEIGDE 25
                899*****9999665 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00093
   PF07723.8  1 sLKtLhLdsvdfddde 16
                sLKtL L ++ ++ ++
  MMETSP0890-20130614|8386_1 39 SLKTLWLKYNNIKEGN 54
                8********9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.82
# Mc/sec: 178.27
//
Query:       MMETSP0890-20130614|8389_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.4   0.6     0.0018   17.9   0.4    1.5  1  PF07009.6 Protein of unknown function (DUF1312)
  ------ inclusion threshold ------
        0.1   11.7   6.7       0.13   11.3   4.6    1.3  1  PF05432.6 Bone sialoprotein II (BSP-II)


Domain annotation for each model (and alignments):
>> PF07009.6  Protein of unknown function (DUF1312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.4   2.7e-07    0.0018      24      95 ..      39     110 ..       2     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.7e-07
   PF07009.6  24 eeekkavikvdGkvvkkinLskvkkkkeikikdgegyniievkngrvrvkeanCpdkicvktgwiskpgqti 95 
                 ++ + + ++++Gkvv+  +  +++ k e ki+d+ g+ +iev + +   +e +C +  cv++g  ++  q+i
  MMETSP0890-20130614|8389_1  39 STDRAIYVEINGKVVECGSNFNTDDKIEAKITDDSGWLLIEVAGATTSGRECSCDNTRCVQEGHNMNSYQII 110
                 5677899*********987666699999999********************************999988876 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.6   1.9e-05      0.13     114     149 ..     126     162 ..      83     163 .] 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.9e-05
   PF05432.6 114 aalqlpkkaG..digkkaakedesdedeeeeeeeeeee 149
                 aa+++ kk+   + gkk  + de dede+eee e+e++
  MMETSP0890-20130614|8389_1 126 AAVKITKKCTlfNGGKKNRRLDEDDEDEDEEE-EDEDD 162
                 67777777653366899999999999999997.44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       756  (0.0552955); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 513.96
//
Query:       MMETSP0890-20130614|8413_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-11   42.6   1.3    1.9e-07   30.3   0.2    2.3  2  PF13516.1  Leucine Rich repeat
    1.2e-05   24.7   0.0    1.9e-05   24.0   0.0    1.3  1  PF12799.2  Leucine Rich repeats (2 copies)
     0.0012   18.3   0.3     0.0041   16.7   0.2    1.7  1  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.01   15.6   0.0       0.41   10.7   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
      0.013   15.4   0.0       0.96    9.8   0.0    2.3  2  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   9.3e-05      0.25       1      23 [.      12      34 ..      12      38 .. 0.92
   2 !   30.3   0.2   6.9e-11   1.9e-07       1      23 [.      40      62 ..      40      63 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.3e-05
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                +++L +L L  N ig eG+ a++
  MMETSP0890-20130614|8413_1 12 NTSLHELWLICNSIGAEGAIAIG 34
                68999**************9987 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 6.9e-11
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                +++L+ LdL++N+ig+eG++aLa
  MMETSP0890-20130614|8413_1 40 NTSLQKLDLGYNNIGNEGAKALA 62
                789*******************8 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   6.9e-09   1.9e-05       1      38 [.      13      55 ..      13      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 6.9e-09
   PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
                t+L++L+L+ N+I       ++  la  ++L+ L+L +N+i +
  MMETSP0890-20130614|8413_1 13 TSLHELWLICNSIGAegaiaIGRALATNTSLQKLDLGYNNIGN 55
                79***********85466668888*****************76 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   1.5e-06    0.0041       2      38 ..      14      54 ..      13      62 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
   PF13855.1  2 nLkeLdLsnNrlkvi....pdgaFkglsnLkvLdLsgnnlk 38
                +L eL+L +N++         +a+   ++L++LdL++nn+ 
  MMETSP0890-20130614|8413_1 14 SLHELWLICNSIGAEgaiaIGRALATNTSLQKLDLGYNNIG 54
                899999999999854223444788888************95 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.048   1.3e+02       1      13 [.      14      26 ..      14      37 .. 0.85
   2 ?   10.7   0.0   0.00015      0.41       1      13 [.      42      54 ..      42      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.048
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L eL L +N++ 
  MMETSP0890-20130614|8413_1 14 SLHELWLICNSIG 26
                699*******986 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00015
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++LdL +Nn+ 
  MMETSP0890-20130614|8413_1 42 SLQKLDLGYNNIG 54
                79*********96 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.04   1.1e+02       1      13 [.      13      25 ..      13      30 .. 0.88
   2 ?    9.8   0.0   0.00035      0.96       1      13 [.      41      53 ..      41      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.04
   PF13504.1  1 pnLkeLdLsgnrL 13
                ++L eL L +n++
  MMETSP0890-20130614|8413_1 13 TSLHELWLICNSI 25
                689*****99987 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00035
   PF13504.1  1 pnLkeLdLsgnrL 13
                ++L++LdL +n++
  MMETSP0890-20130614|8413_1 41 TSLQKLDLGYNNI 53
                69*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:01.40
# Mc/sec: 109.55
//
Query:       MMETSP0890-20130614|8496_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 336.79
//
Query:       MMETSP0890-20130614|8514_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   13.8   0.0      0.033   13.7   0.0    1.1  1  PF00589.17 Phage integrase family


Domain annotation for each model (and alignments):
>> PF00589.17  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.4e-06     0.033     115     170 ..      25      80 ..       7      83 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.4e-06
                 HHHHHHH----SS----TTT---HHHHHH----HHHHHH-----SSHHHHHHCTTS CS
  PF00589.17 115 fkravkeagiekeltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthva 170
                 +++ + +a++ k+ t+  +R  +at l+++ ++ + +++l G +s      Y +v+
  MMETSP0890-20130614|8514_1  25 VSQCGLDAATAKRYTTQGIRAGAATTLVKHRIPEQRIKDLAGVTSEDWLVTYDRVD 80 
                 456666778889******************************99999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 337.67
//
Query:       MMETSP0890-20130614|8515_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   13.0   0.1        1.8    8.4   0.0    2.3  1  PF01556.13 DnaJ C terminal domain


Domain annotation for each model (and alignments):
>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00013       1.8      29      48 ..      67      86 ..      58     101 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00013
  PF01556.13 29 ikvkippgtkpgeklrikgk 48
                i v+ ppg+kpg++++i g+
  MMETSP0890-20130614|8515_1 67 IMVTAPPGSKPGDRIIIDGR 86
                78899999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 566.04
//
Query:       MMETSP0890-20130614|8535_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|8629_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 235.95
//
Query:       MMETSP0890-20130614|8632_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.64   10.1  23.5        1.3    9.1  16.3    1.5  1  PF11759.3 Keratin-associated matrix
        3.6    7.3   9.3        4.6    7.0   6.5    1.2  1  PF13505.1 Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  16.3    0.0002       1.3      10      55 ..       2      51 ..       1      53 [] 0.53

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0002
   PF11759.3 10 glgygsg.gyG.glGcgygCgygsirrlGyGsg...fggyGsGsGYG.GyGy 55
                g+g g+g g G g+ +g+g g gs  ++G+Gsg       G G+G G G+G 
  MMETSP0890-20130614|8632_1  2 GVGAGVGlGVGtGVKLGVGTGVGSGVGIGVGSGigaN--VGLGVGAGvGLGV 51
                4566666666666667777777777777777773232..2333333333333 PP

>> PF13505.1  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.5   0.00068       4.6      21      64 ..       2      45 ..       1      52 [. 0.73

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00068
   PF13505.1 21 gfyvggglgvssisvdgdgsdsgggfgvgagyqfndvfglegsy 64
                g+++g+glgv +  + g+g+  g g+g+g+g  ++ ++gl +++
  MMETSP0890-20130614|8632_1  2 GVGAGVGLGVGTGVKLGVGTGVGSGVGIGVGSGIGANVGLGVGA 45
                45566666666555588888889999999999998888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      114  (0.00833821); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 184.07
//
Query:       MMETSP0890-20130614|8636_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-13   46.7   6.4    2.8e-06   26.7   0.4    2.6  3  PF13516.1  Leucine Rich repeat
    2.3e-06   26.9   0.3    3.8e-06   26.2   0.2    1.4  1  PF12799.2  Leucine Rich repeats (2 copies)
     0.0012   18.6   0.1        2.4    8.5   0.0    2.4  2  PF13504.1  Leucine rich repeat
     0.0033   17.0   2.3      0.018   14.6   1.6    1.9  1  PF13855.1  Leucine rich repeat
     0.0066   16.2   0.0        1.6    8.9   0.0    2.2  2  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
      0.045   13.5   0.8       0.97    9.2   0.4    2.5  1  PF12826.2  Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.6   3.7e+03      18      23 ..       1       6 [.       1       7 [. 0.86
   2 !   22.8   0.1   2.2e-08   5.1e-05       1      22 [.      12      33 ..      12      35 .. 0.95
   3 !   26.7   0.4   1.2e-09   2.8e-06       1      24 []      40      63 ..      40      63 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.6
   PF13516.1 18 GlsaLa 23
                G++aLa
  MMETSP0890-20130614|8636_1  1 GAKALA 6 
                89**98 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 2.2e-08
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaL 22
                +++L++LdL  N+ig eG++aL
  MMETSP0890-20130614|8636_1 12 NTSLKTLDLALNNIGAEGAKAL 33
                789******************9 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1.2e-09
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                +++L+ L+L++N+igdeG+ ++an
  MMETSP0890-20130614|8636_1 40 NTSLQQLNLGYNHIGDEGANSIAN 63
                789******************997 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   1.7e-09   3.8e-06       1      38 [.      13      55 ..      13      66 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.7e-09
   PF12799.2  1 tnLevLdLsnNnIkd......lppelanLpnLktLnLsnNpisd 38
                t+L++LdL+ NnI        + + l+  ++L++LnL +N+i d
  MMETSP0890-20130614|8636_1 13 TSLKTLDLALNNIGAegakalVTA-LGTNTSLQQLNLGYNHIGD 55
                79***********64455665556.*****************87 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0014       3.3       1      13 [.      13      25 ..      13      33 .. 0.89
   2 !    8.5   0.0    0.0011       2.4       1      14 [.      41      54 ..      41      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0014
   PF13504.1  1 pnLkeLdLsgnrL 13
                ++Lk+LdL+ n++
  MMETSP0890-20130614|8636_1 13 TSLKTLDLALNNI 25
                69******99987 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0011
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++L++L+L +n++ 
  MMETSP0890-20130614|8636_1 41 TSLQQLNLGYNHIG 54
                69*********985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.6     8e-06     0.018      20      61 .]       8      53 ..       3      53 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8e-06
   PF13855.1 20 aFkglsnLkvLdLsgnnl..ksispea....fkgLpsLreLnLsgNrl 61
                a++  ++Lk+LdL  nn+  +    +a    +   +sL++LnL +N++
  MMETSP0890-20130614|8636_1  8 ALGTNTSLKTLDLALNNIgaEGA--KAlvtaLGTNTSLQQLNLGYNHI 53
                7778899***********53233..22233499999**********98 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0079        18       1      13 [.      14      26 ..      14      38 .. 0.88
   2 !    8.9   0.0   0.00071       1.6       1      14 [.      42      55 ..      42      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0079
                TESEEEETSSBCB CS
  PF00560.28  1 nLeeLdLsgNnlt 13
                +L++LdL  Nn+ 
  MMETSP0890-20130614|8636_1 14 SLKTLDLALNNIG 26
                79******99985 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00071
                TESEEEETSSBCBC CS
  PF00560.28  1 nLeeLdLsgNnlts 14
                +L+ L+L +N++ +
  MMETSP0890-20130614|8636_1 42 SLQQLNLGYNHIGD 55
                79*********974 PP

>> PF12826.2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00043      0.97       6      53 ..      20      63 ..       5      67 .] 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00043
   PF12826.2  6 LGIrhVGektAklLakhFgsldaLaeasveeLveiddiGeevAqsive 53
                L + ++G++ Ak+L+ + g+   L++ ++      + iG+e A+si +
  MMETSP0890-20130614|8636_1 20 LALNNIGAEGAKALVTALGTNTSLQQLNL----GYNHIGDEGANSIAN 63
                67889999999999999998777777664....346666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 258.96
//
Query:       MMETSP0890-20130614|8640_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 647.44
//
Query:       MMETSP0890-20130614|8641_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   43.3   0.5      3e-05   23.5   0.0    2.5  2  PF13516.1  Leucine Rich repeat
      6e-06   25.6   1.2     0.0005   19.4   0.0    1.8  3  PF12799.2  Leucine Rich repeats (2 copies)
     0.0075   15.8   0.6      0.025   14.2   0.2    1.9  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.021   14.7   0.1        3.8    7.5   0.0    2.9  3  PF07022.8  Bacteriophage CI repressor helix-turn-helix domain
      0.044   13.8   0.0         10    6.6   0.0    2.5  2  PF13504.1  Leucine rich repeat
       0.07   13.0   0.1        6.6    7.0   0.0    2.3  2  PF00560.28 Leucine Rich Repeat
      0.099   13.0   0.0       0.64   10.5   0.0    2.0  2  PF07723.8  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   9.9e-07    0.0019       1      24 []      11      34 ..      11      34 .. 0.96
   2 !   23.5   0.0   1.5e-08     3e-05       1      23 [.      39      61 ..      39      66 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.9e-07
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLan 24
                +++L++L L++ +ig eG+ a+an
  MMETSP0890-20130614|8641_1 11 NTSLQELYLGYDNIGAEGANAIAN 34
                789*******************97 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.5e-08
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                +++L++L L +N+igdeG+ a++
  MMETSP0890-20130614|8641_1 39 NTSLKTLFLYDNNIGDEGVIAIG 61
                789****************9986 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0045       8.9      22      36 ..      10      24 ..       6      34 .. 0.66
   2 !   19.4   0.0   2.6e-07    0.0005       1      38 [.      12      54 ..      12      66 .. 0.83
   3 !   10.5   0.1   0.00016      0.32       1      29 [.      40      73 ..      40      73 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0045
   PF12799.2 22 nLpnLktLnLsnNpi 36
                  ++L++L+L + +i
  MMETSP0890-20130614|8641_1 10 TNTSLQELYLGYDNI 24
                566666666665555 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.6e-07
   PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
                t+L++L+L + nI       + + l+  ++LktL L  N+i d
  MMETSP0890-20130614|8641_1 12 TSLQELYLGYDNIGAeganaIANALGTNTSLKTLFLYDNNIGD 54
                79***********64455557666999**************88 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00016
   PF12799.2  1 tnLevLdLsnNnIkd.....lppelanLpnLktL 29
                t+L++L L +NnI d     ++  la  ++L++L
  MMETSP0890-20130614|8641_1 40 TSLKTLFLYDNNIGDegviaIGRALATNTSLQLL 73
                6899999999999876666666667777777766 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   1.3e-05     0.025      20      61 .]       7      52 ..       2      52 .. 0.81
   2 !    6.5   0.2    0.0032       6.2      20      37 ..      35      52 ..      29      74 .] 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
   PF13855.1 20 aFkglsnLkvLdLsgnnl..k..sispeafkgLpsLreLnLsgNrl 61
                a+   ++L++L+L+++n+  +  +  ++a+   +sL+ L+L +N++
  MMETSP0890-20130614|8641_1  7 ALATNTSLQELYLGYDNIgaEgaNAIANALGTNTSLKTLFLYDNNI 52
                6777899***********65433445578999************98 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0032
   PF13855.1 20 aFkglsnLkvLdLsgnnl 37
                a++  ++Lk+L L +nn+
  MMETSP0890-20130614|8641_1 35 ALGTNTSLKTLFLYDNNI 52
                566667788888888877 PP

>> PF07022.8  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.002       3.8      46      63 ..       5      22 ..       2      25 .. 0.86
   2 ?    2.5   0.0     0.072   1.4e+02      45      60 ..      32      47 ..      28      53 .. 0.82
   3 ?    1.6   0.0      0.13   2.6e+02      47      58 ..      62      73 ..      54      74 .] 0.80

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.002
   PF07022.8 46 qcaletgisLewLatGkg 63
                + al+t++sL++L +G +
  MMETSP0890-20130614|8641_1  5 ATALATNTSLQELYLGYD 22
                679***********9976 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.072
   PF07022.8 45 iqcaletgisLewLat 60
                i+ al t++sL+ L +
  MMETSP0890-20130614|8641_1 32 IANALGTNTSLKTLFL 47
                677999*****99865 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.13
   PF07022.8 47 caletgisLewL 58
                 al+t++sL+ L
  MMETSP0890-20130614|8641_1 62 RALATNTSLQLL 73
                599******976 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.022        42       1      10 [.      12      21 ..      12      35 .. 0.83
   2 ?    6.6   0.0    0.0054        10       1      14 [.      40      53 ..      40      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.022
   PF13504.1  1 pnLkeLdLsg 10
                ++L+eL+L +
  MMETSP0890-20130614|8641_1 12 TSLQELYLGY 21
                69******76 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0054
   PF13504.1  1 pnLkeLdLsgnrLt 14
                ++Lk+L L +n++ 
  MMETSP0890-20130614|8641_1 40 TSLKTLFLYDNNIG 53
                69*********985 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.027        52       1      12 [.      13      24 ..      13      37 .. 0.84
   2 ?    7.0   0.0    0.0034       6.6       1      14 [.      41      54 ..      41      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.027
                TESEEEETSSBC CS
  PF00560.28  1 nLeeLdLsgNnl 12
                +L+eL+L + n+
  MMETSP0890-20130614|8641_1 13 SLQELYLGYDNI 24
                79*****98776 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0034
                TESEEEETSSBCBC CS
  PF00560.28  1 nLeeLdLsgNnlts 14
                +L++L L +Nn+ +
  MMETSP0890-20130614|8641_1 41 SLKTLFLYDNNIGD 54
                69*********985 PP

>> PF07723.8  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.63   1.2e+03       1       9 [.      13      21 ..      13      29 .. 0.78
   2 ?   10.5   0.0   0.00033      0.64       1      15 [.      41      55 ..      41      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.63
   PF07723.8  1 sLKtLhLds 9 
                sL  L+L +
  MMETSP0890-20130614|8641_1 13 SLQELYLGY 21
                799999965 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00033
   PF07723.8  1 sLKtLhLdsvdfddd 15
                sLKtL+L+ + + d+
  MMETSP0890-20130614|8641_1 41 SLKTLFLYDNNIGDE 55
                8********999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 246.29
//
Query:       MMETSP0890-20130614|8637_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-06   26.2   1.5    4.6e-06   25.7   1.1    1.2  1  PF07466.6  Protein of unknown function (DUF1517)
  ------ inclusion threshold ------
      0.085   13.0   1.7       0.17   12.0   1.2    1.5  1  PF05531.7  Nucleopolyhedrovirus P10 protein
       0.24   10.1   6.8       0.44    9.3   4.7    1.3  1  PF14362.1  Domain of unknown function (DUF4407)
       0.63    9.3   4.2          1    8.6   2.9    1.3  1  PF05529.7  B-cell receptor-associated protein 31-like
        3.5    7.0   8.3        4.6    6.6   4.9    1.8  1  PF04977.10 Septum formation initiator
        4.5    7.0   5.5        1.1    9.0   1.4    1.8  2  PF14070.1  Putative motility protein


Domain annotation for each model (and alignments):
>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.1     2e-09   4.6e-06       1     121 [.      77     194 ..      77     203 .. 0.54

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2e-09
   PF07466.6   1 aaasGGriGGgsfrapsrssssprssspsgggygsssssygggys..gggfgfpflipifgfGggflglfgllilvaivgvlvnalrsaggge.egessaeasndkvsvvklqvgLlasakelq 121
                 aa+sGGr GG+sf+ +  ++ +p++   ++++            s  g g+g       +g Ggg ++  ++++ + ++  +v+  r+a     + e +++  +d++++  l+  L a+   lq
  MMETSP0890-20130614|8637_1  77 AARSGGRAGGSSFSRSAPRTAAPARTTVRRYSAPVAV-PVPVPVSpfGYGYGGY----GYGYGGG-ISPGTAYLGLSLIDTIVQEQRRAALMRqQLETQQKLGRDNAEIEALKKQLDAQEARLQ 194
                 599***********66555555555444444333222.1111112123222222....3677776.5555666777777777777777666554444444455555555555555677776666 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   7.6e-05      0.17      28      57 ..     170     199 ..     149     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.6e-05
   PF05531.7  28 ddvqenlpdvtelnekLdaqsaqLaeletk 57 
                 +++  +  +++ l+++Ldaq a L+el+++
  MMETSP0890-20130614|8637_1 170 QKLGRDNAEIEALKKQLDAQEARLQELQAQ 199
                 5677788899*****************986 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.7   0.00019      0.44     119     166 ..     154     201 ..     148     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00019
   PF14362.1 119 qeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevq 166
                 qe+ +aa  + +   ++kl++ +aei+al+++ld+++a++++++++++
  MMETSP0890-20130614|8637_1 154 QEQRRAALMRQQLETQQKLGRDNAEIEALKKQLDAQEARLQELQAQAD 201
                 34444443344444789**************************99886 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.9   0.00046         1     122     184 ..     148     201 ..     144     204 .] 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00046
   PF05529.7 122 lvselvkleeklealkkqaesatkaakklkeekekklkeeveklkkeleekekdlealkkqae 184
                 l+ ++v+++  +  +++q e         +++k  ++++e+e+lkk+l+++e  l+ l+ qa+
  MMETSP0890-20130614|8637_1 148 LIDTIVQEQRRAALMRQQLE---------TQQKLGRDNAEIEALKKQLDAQEARLQELQAQAD 201
                 55555555555555555555.........446677899***********************97 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.9     0.002       4.6      17      49 ..     170     202 ..     165     204 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
  PF04977.10  17 lalyqlkqeiaalqaelaklkaeneeLeaevkd 49 
                 ++l + ++ei+al+++l++++a+ +eL+a+ ++
  MMETSP0890-20130614|8637_1 170 QKLGRDNAEIEALKKQLDAQEARLQELQAQADK 202
                 56677899********************99875 PP

>> PF14070.1  Putative motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.5   5.7e+03      37      42 ..      52      57 ..      47      69 .. 0.51
   2 ?    9.0   1.4   0.00047       1.1      10      36 ..     169     196 ..     159     200 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.5
   PF14070.1 37 lemmse 42
                 ++m+ 
  MMETSP0890-20130614|8637_1 52 AKAMAR 57
                344432 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00047
   PF14070.1  10 qaklqqd.vgiavlKkamDaqeenaaql 36 
                 q+kl  d + i  lKk++Daqe+  ++l
  MMETSP0890-20130614|8637_1 169 QQKLGRDnAEIEALKKQLDAQEARLQEL 196
                 89999999**************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1154  (0.0844061); expected 273.4 (0.02)
Passed bias filter:                      741  (0.0541984); expected 273.4 (0.02)
Passed Vit filter:                       120  (0.00877706); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:01.04
# Mc/sec: 470.05
//
Query:       MMETSP0890-20130614|8643_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.6   0.0       0.14   11.9   0.0    1.3  1  PF10902.3 Protein of unknown function (DUF2693)


Domain annotation for each model (and alignments):
>> PF10902.3  Protein of unknown function (DUF2693)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     1e-05      0.14      47      69 ..      22      44 ..       9      52 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1e-05
   PF10902.3 47 skesvrvydvelkawRsFrldkl 69
                +++ ++vy     aw sF+l+kl
  MMETSP0890-20130614|8643_1 22 ETQACPVYACTRSAWESFKLKKL 44
                2345*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 403.60
//
Query:       MMETSP0890-20130614|8638_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-24   84.9   1.0    8.4e-24   83.6   0.7    1.7  1  PF00447.12 HSF-type DNA-binding
  ------ inclusion threshold ------
      0.019   14.4   0.2        0.5    9.9   0.1    2.7  2  PF02671.16 Paired amphipathic helix repeat
       0.52   10.2   7.3       0.62    9.9   1.6    2.6  2  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
        0.6   10.3   7.3        2.2    8.5   0.9    3.2  3  PF06005.7  Protein of unknown function (DUF904)


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.7   2.5e-27   8.4e-24       2     102 ..      35     130 ..      34     132 .. 0.93

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 2.5e-27
  PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkks 102
                 F++ l+++l+    +e+i+w+++g+++ + d+++fa ++ pk+F+h+nf+SF+R LnmY+Fhk+ ++ek+     k ++F h+ Fk++++ell++i+rk  
  MMETSP0890-20130614|8638_1  35 FVRTLFNLLKMC-DEEIIQWTDDGEAVTINDPTRFACEICPKFFRHRNFNSFTRILNMYQFHKIPNNEKN----VKKVKFIHPCFKRNHEELLHRIQRKGA 130
                 889999999864.469****************************************************98....889*********************965 PP

>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00015       0.5       4      23 ..      82     101 ..      80     124 .. 0.74
   2 ?    1.2   0.0     0.074   2.5e+02      22      43 ..     322     343 ..     308     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHHHH CS
  PF02671.16   4 YqeFLeiLhdyskeiisrte 23 
                 +++F +iL++y+ + i+ +e
  MMETSP0890-20130614|8638_1  82 FNSFTRILNMYQFHKIPNNE 101
                 789***********999988 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.074
                 HHHHHHHHHHSSS-HHHHHH-- CS
  PF02671.16  22 telyqeVadLlgghpdLleeFn 43 
                 t++ q+ +d +   p+Ll  F 
  MMETSP0890-20130614|8638_1 322 TDMQQQAWDAFLQSPQLLAAFQ 343
                 56999*************9996 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.042   1.4e+02      84     131 ..     117     162 ..     100     185 .. 0.68
   2 ?    9.9   1.6   0.00018      0.62      49     121 ..     232     306 ..     223     377 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.042
   PF13094.1  84 nlhpvlqelesevleenalaekedlklseknleptldeellellkqln 131
                 n +++l++ +++ +++ ++++ e+ k+++k +e ++ +e ++l+  l+
  MMETSP0890-20130614|8638_1 117 NHEELLHRIQRKGANK-ISSSIEN-KDTKKAEEDNIAPENKKLKLDLA 162
                 4456666666666666.3333233.56888888888888777776665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00018
   PF13094.1  49 eirreeaelekdeekleeLeknakalererkeesknlhpvlqelesevleenalaekedlklseknleptl..de 121
                 e++re+  l+k+  +l+ ++ +   l++++ ++s+ ++ ++ +l s++l++ +++ ++++  sek ++  l  d+
  MMETSP0890-20130614|8638_1 232 ELERETRRLKKENSRLKGMQGEMAGLRAQLDTQSEMIRNLQLQLGSPMLPSFVDSTSQNFAISEKMTAALLeeDN 306
                 8999999999*****************************************999999996666665555554332 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.017        57      32      59 ..     138     165 ..     130     187 .. 0.84
   2 ?    8.5   0.9   0.00064       2.2      19      65 ..     229     271 ..     221     275 .. 0.76
   3 ?   -2.9   0.1       2.2   7.6e+03      29      38 ..     301     310 ..     296     334 .. 0.49

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHH---T CS
   PF06005.7  32 eeneqlkeeneeLeeenkklkeereawq 59 
                 e++++ k e++++  enkklk + ++++
  MMETSP0890-20130614|8638_1 138 ENKDTKKAEEDNIAPENKKLKLDLAKIK 165
                 56677789999*********98877665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00064
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHH CS
   PF06005.7  19 tialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerlral 65 
                 ++  L++e  +Lk+en+ lk     ++ e   l+ + + + e++r+l
  MMETSP0890-20130614|8638_1 229 RVVELERETRRLKKENSRLKG----MQGEMAGLRAQLDTQSEMIRNL 271
                 556788888888888777765....6778888889999999998876 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.2
                 HHHHHHHHHH CS
   PF06005.7  29 eLkeeneqlk 38 
                  L+e+n++++
  MMETSP0890-20130614|8638_1 301 LLEEDNKSNN 310
                 5555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1101  (0.0805295); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:01.12
# Mc/sec: 877.96
//
Query:       MMETSP0890-20130614|8647_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.75
# Mc/sec: 233.25
//
Query:       MMETSP0890-20130614|8648_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-22   78.2   0.0    2.1e-20   72.7   0.0    2.0  1  PF05907.8 Eukaryotic protein of unknown function (DUF866)


Domain annotation for each model (and alignments):
>> PF05907.8  Eukaryotic protein of unknown function (DUF866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.5e-24   2.1e-20       6     160 ..       6     176 ..       1     177 [. 0.83

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 1.5e-24
   PF05907.8   6 lqlkaelenlenlkpseenfeyflklkCsnCgevsdkaieiteseevelkggkgeanlvqkCklCsrensidii.........egsa.........kpltledsekkktivvfdCRglEivefspr.agwkaeaaesgtkfe.eidlsekdwvdydekaeesvgieeleseikkl 160
                  +lk + en++++++++++  + + lk ++  ev  k  +i+ ++ +el+g++g+a+lv k    + +++++ii         +  +         + lt++ds+++  +++f+ Rg+++++ s + ++++++a+ sgt fe ++d se+dw+dyd++ae +v+++++e+++ +l
  MMETSP0890-20130614|8648_1   6 AYLKGDFENIDKIETKTSTSVWTIDLKHGQGDEV-RKGVTIDAEDVIELEGSRGTAHLVLKFADANEKAQVSIItpeefrskyK--NkknamahapRALTADDSGSFVPVLAFEARGADVINLSLGgDNFIVTAT-SGTVFEtDLDFSEGDWSDYDDQAELPVSLTNIETKVDVL 176
                 57999**********************9997766.68899*******************************9983332222210..111112221235799**********************986268999998.*****769*************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 621.66
//
Query:       MMETSP0890-20130614|8646_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   16.3   0.4     0.0094   15.7   0.3    1.3  1  PF10177.4  Uncharacterised conserved protein (DUF2371)
  ------ inclusion threshold ------
      0.029   14.3   0.3      0.029   14.3   0.2    1.8  2  PF13273.1  Protein of unknown function (DUF4064)
       0.13   11.4   0.3       0.19   10.8   0.0    1.5  2  PF00335.15 Tetraspanin family
       0.75    9.2   2.6       0.38   10.1   0.4    1.6  2  PF04335.8  VirB8 protein
        2.1    8.4   5.4         17    5.5   0.0    2.4  2  PF13703.1  PepSY-associated TM helix
        6.6    6.7   9.0        0.5   10.3   2.0    2.2  3  PF11239.3  Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> PF10177.4  Uncharacterised conserved protein (DUF2371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   4.1e-06    0.0094      19      64 ..     111     156 ..      94     176 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.1e-06
   PF10177.4  19 kkkrkadvvvvrgklklvsasglvlilGvlvllvGiamavlGYwpk 64 
                 ++++  + +  +    l  ++ + ++lG++v +vG+ + ++GY + 
  MMETSP0890-20130614|8646_1 111 RQAKDMERLAEKQSTELRFVAVVGAVLGIVVAVVGAVLGIVGYMQL 156
                 455555666777777899999999*******************876 PP

>> PF13273.1  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.1   4.7e+03      58      68 ..      37      47 ..      27      53 .. 0.56
   2 ?   14.3   0.2   1.3e-05     0.029       9      80 ..     131     202 ..      99     203 .] 0.74

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.1
   PF13273.1 58 vlilgvlaiil 68
                +l++++l++++
  MMETSP0890-20130614|8646_1 37 SLMILWLLVVS 47
                34444444444 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.3e-05
   PF13273.1   9 gliGgilgilagllalvigilgsselkkeeqeeaeeleeetildllstlvlilgvlaiilsilgiigsilvk 80 
                 +++G++lgi+++++ +v+gi+g  +l+++  +   e+e+   +++  +l ++ + +++ +++  ii++++ k
  MMETSP0890-20130614|8646_1 131 AVVGAVLGIVVAVVGAVLGIVGYMQLSENLMKVVYEVEKLGKITTEFGLYKGGANVFLGALVTSIIAYFVTK 202
                 789******************997776666666555554444444444444444555555555666666655 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   3.5e+03      84      98 ..      38      52 ..      34      57 .. 0.54
   2 ?   10.8   0.0   8.5e-05      0.19      33      75 ..     118     161 ..      86     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.5
  PF00335.15 84 llflaelalailafv 98
                l++l +l+++ ++fv
  MMETSP0890-20130614|8646_1 38 LMILWLLVVSSAGFV 52
                444444445555554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 8.5e-05
  PF00335.15  33 llaeasnssksavilliiviGviilil.gilGcigalkeskcll 75 
                 +lae ++++ ++v ++ +v+G+++ ++ ++lG++g ++ s  l+
  MMETSP0890-20130614|8646_1 118 RLAEKQSTELRFVAVVGAVLGIVVAVVgAVLGIVGYMQLSENLM 161
                 56677888999************************986665554 PP

>> PF04335.8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   2.8e+03      21      43 ..      34      56 ..      31      60 .. 0.72
   2 ?   10.1   0.4   0.00017      0.38      18      61 ..     129     174 ..     109     201 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.2
   PF04335.8 21 wlvaivalliavlavlavvvllp 43
                w + ++ l + v++++++v+ +p
  MMETSP0890-20130614|8646_1 34 WQMSLMILWLLVVSSAGFVMPSP 56
                44556677777888888888887 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00017
   PF04335.8  18 rrawlvaivalliavlavl.avvvllplktvep.yvvevdkttgev 61 
                  +a + a++++++av+ ++ ++v  ++l++     v+ev+k+++ +
  MMETSP0890-20130614|8646_1 129 FVAVVGAVLGIVVAVVGAVlGIVGYMQLSENLMkVVYEVEKLGKIT 174
                 2444447777888888777799999999774443888899995444 PP

>> PF13703.1  PepSY-associated TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0075        17      10      43 ..      26      59 ..      23      73 .. 0.81
   2 ?    3.0   2.1     0.045     1e+02      17      39 ..     128     150 ..     119     185 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0075
   PF13703.1 10 algailgrlvvglaallllvalvsGlilhlprif 43
                +++++l r+ + l+ l+llv++ +G+++  p+  
  MMETSP0890-20130614|8646_1 26 HFPKNLSRWQMSLMILWLLVVSSAGFVMPSPKCH 59
                6788899*******************98766655 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.045
   PF13703.1  17 rlvvglaallllvalvsGlilhl 39 
                 r+v+ + a+l +v+ v+G +l++
  MMETSP0890-20130614|8646_1 128 RFVAVVGAVLGIVVAVVGAVLGI 150
                 67888888899999999988875 PP

>> PF11239.3  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.8   8.8e+03      63      73 ..      42      52 ..      35      53 .. 0.57
   2 ?   -1.2   0.0      0.86     2e+03      15      32 ..      67      84 ..      66     110 .. 0.68
   3 ?   10.3   2.0   0.00022       0.5      29      65 ..     116     151 ..     105     161 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.8
   PF11239.3 63 qlvilgvaGfl 73
                 l++++ aGf+
  MMETSP0890-20130614|8646_1 42 WLLVVSSAGFV 52
                34456667765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.86
   PF11239.3 15 EraLsaeDPklasavesg 32
                E+ L +e+P +    +++
  MMETSP0890-20130614|8646_1 67 ESVLQNEEPSFEDPTTKE 84
                778999999998766654 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00022
   PF11239.3  29 vesgrrrraserrivlgvllavlGlvllvaGvvlqlv 65 
                 +e  + ++ s++ ++++v++avlG+v+ v+G+vl +v
  MMETSP0890-20130614|8646_1 116 MERLA-EKQSTELRFVAVVGAVLGIVVAVVGAVLGIV 151
                 45433.344555569****************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       955  (0.0698508); expected 273.4 (0.02)
Passed bias filter:                      676  (0.0494441); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 726.06
//
Query:       MMETSP0890-20130614|8660_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-09   35.3   0.0    6.7e-09   35.2   0.0    1.1  1  PF00085.15 Thioredoxin
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.053   13.5   0.0    1.7  2  PF13905.1  Thioredoxin-like
      0.025   14.4   0.0      0.041   13.7   0.0    1.4  1  PF13899.1  Thioredoxin-like


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.5e-12   6.7e-09       3      81 ..       7      92 ..       5     114 .] 0.76

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.5e-12
                EESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-..TSEEEEEETT..TTHHHHHHTT...--SSSEEEEESS CS
  PF00085.15  3 lvltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelke..kvvlakvdvd..enkdlaseyg...vegiPtlklfkn 81
                 +l+ +n+e+   + +k+++ve y++ C +Ck+++P+++ +ae++++  ++ +a++ vd  + ++las+++    +giP+++++  
  MMETSP0890-20130614|8660_1  7 YQLDVDNYESIAIEVNKPLVVEVYSEMCESCKEFSPTWDIFAEQIASidDIAIARLCVDkpKGAKLASQFKgllKSGIPKVIFLAS 92
                678899****************************************9998888876555116678888876332367777777654 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05     0.053       1      45 [.      22      65 ..      22      78 .. 0.86
   2 ?    0.0   0.0      0.19   8.5e+02      65      90 ..      62      90 ..      54      94 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.2e-05
   PF13905.1  1 gkivllyfaaswcppckaftpelkelyeklkaskdkveivyVsld 45
                +k++++ ++++ c++ck+f p+++ + e++  s d++ i  + +d
  MMETSP0890-20130614|8660_1 22 NKPLVVEVYSEMCESCKEFSPTWDIFAEQIA-SIDDIAIARLCVD 65
                699***************************8.6888777665555 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.19
   PF13905.1 65 vpfndkrrnklkklyk...vkaiPtlvvl 90
                + +++++  kl++++k    ++iP+++ l
  MMETSP0890-20130614|8660_1 62 LCVDKPKGAKLASQFKgllKSGIPKVIFL 90
                56677777788887765545669999987 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.1e-06     0.041       7      80 ..      12      90 ..       6      92 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.1e-06
   PF13899.1  7 dealakareegkpllvifgadwcpdCqaldrd..vlsdeevkaalaekfvllrvdvterdanl...eldr...qgvPvvvfl 80
                d+  + a e +kpl v ++++ c++C+ +  +  ++  e ++  + +++ + r+ v++ ++     ++++    g+P v+fl
  MMETSP0890-20130614|8660_1 12 DNYESIAIEVNKPLVVEVYSEMCESCKEFSPTwdIF-AEQIAS-I-DDIAIARLCVDKPKGAKlasQFKGllkSGIPKVIFL 90
                5555678899*******************6552322.234444.4.466666666655555333544444666779999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 390.26
//
Query:       MMETSP0890-20130614|8656_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-19   70.2   0.1    2.6e-15   56.1   0.0    2.3  2  PF00575.18 S1 RNA binding domain


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.9e-19   2.6e-15       3      72 ..      90     160 ..      88     161 .. 0.97
   2 !   11.8   0.0   1.2e-05      0.17      11      37 ..     187     213 ..     185     233 .. 0.90

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.9e-19
                 STT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CC.EEEECCCCEETT----EEEEE-EEETT.EEEE CS
  PF00575.18   3 ekGevvkGtVtsvtkgGafVdlgngvegfipiseissd.rvedpeevlkvgdevevkvlkvdkerkriiLs 72 
                  +G+ ++G+V ++ ++Ga+V +g +++gf++++++  +  v+  e+vl  g+e++v v +vd ++kr++Ls
  MMETSP0890-20130614|8656_1  90 TVGDWFDGVVRKLRPHGAYVSIGTEIDGFVHVKDLRENeFVQRAEDVLFLGQEIRVCVKGVDPDTKRLSLS 160
                 68**********************************999*******************************9 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.2e-05
                 -EEEEETTEEEEE--.--EEEEEGGGS CS
  PF00575.18  11 tVtsvtkgGafVdlgngvegfipisei 37 
                 ++ +vt+++afVd+g+ + +++++ ++
  MMETSP0890-20130614|8656_1 187 RIMRVTPYAAFVDVGAIIPAYLHVTDV 213
                 6889*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 962.12
//
Query:       MMETSP0890-20130614|8659_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-38  129.9  13.5    6.3e-38  129.7   9.4    1.1  1  PF03357.16 Snf7
  ------ inclusion threshold ------
       0.14   11.4  12.5       0.51    9.5   2.8    2.2  2  PF04012.7  PspA/IM30 family
        1.3    9.3   5.2        7.4    6.8   0.0    2.6  3  PF14196.1  L-2-amino-thiazoline-4-carboxylic acid hydrolase
        1.9    8.1  10.8       0.69    9.5   2.6    2.7  2  PF01920.15 Prefoldin subunit
        2.7    6.2   7.4        3.4    5.8   5.1    1.1  1  PF13166.1  AAA domain
        5.8    6.2   7.9        5.6    6.2   0.5    2.3  2  PF13835.1  Domain of unknown function (DUF4194)


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   9.4   2.8e-41   6.3e-38       2     169 ..      18     185 ..      17     187 .. 0.98

  Alignments for each domain:
  == domain 1    score: 129.7 bits;  conditional E-value: 2.8e-41
  PF03357.16   2 ailsLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda..deedEeeldaeLdaLeqelgdeelesvelpsvPse 169
                 ++++++ka+rel+k++ +lek+++kl a+++k+ak+g++  +++++k+++r++ +++++ + +++l++v+l++++ ks+ +++ amk+++ am  mnk ++++ ++k+m ++++++e a+ ++e++++ ldda  +e dEee ++++ ++++e+g++   + ++p++P+ 
  MMETSP0890-20130614|8659_1  18 NKREIQKAIRELDKERGNLEKQEQKLIADIRKFAKEGQMGPVKIMAKDLVRTRTYITKFIELRSHLNAVSLKLQTVKSQEAMASAMKSVTTAMIRMNKAVNVPTVQKIMLNFQRENERAELTQEVMGDLLDDAmeEEGDEEEQEKIVGQVLDEIGINF--GDSVPEAPTI 185
                 789***********************************************************************************************************************************************************..********96 PP

>> PF04012.7  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.9    0.0015       3.4      26      59 ..      20      53 ..      13      57 .. 0.90
   2 ?    9.5   2.8   0.00022      0.51     127     209 ..      82     161 ..      73     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0015
   PF04012.7 26 kileqairdmqselakarqalaqviarqkqlerk 59
                + +++air++++e ++++++  ++ia+ ++++++
  MMETSP0890-20130614|8659_1 20 REIQKAIRELDKERGNLEKQEQKLIADIRKFAKE 53
                6699***********************9999876 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00022
   PF04012.7 127 kieelkakkellkarekaakaqeavqkslgklstesatdslerieeKieerearadaaaelaesaqdldakleaagiqkavse 209
                  ++++  k +++k++e++a+a + v++++  ++ + +++  ++i    +++ +ra++ +e  ++   ld ++e++g +++  e
  MMETSP0890-20130614|8659_1  82 HLNAVSLKLQTVKSQEAMASAMKSVTTAMIRMNKAVNVPTVQKIMLNFQRENERAELTQEVMGDL--LDDAMEEEGDEEEQ-E 161
                 566777899***********************************999999999999999999533..45555555555554.3 PP

>> PF14196.1  L-2-amino-thiazoline-4-carboxylic acid hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4     0.022        50      33      82 ..      17      65 ..      10      82 .. 0.80
   2 ?   -0.5   0.0      0.58   1.3e+03      10      32 ..      95     116 ..      79     147 .. 0.51
   3 ?    6.8   0.0    0.0032       7.4      16      55 ..     141     181 ..     129     203 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.022
   PF14196.1 33 eaeevireaieafgekrgkkiaerakakpkdlkkfaevkkdmgeddafe.e 82
                + ++ i++ai++  ++rg+  +++ k    d++kfa+ + +mg  +++  +
  MMETSP0890-20130614|8659_1 17 KNKREIQKAIRELDKERGNLEKQEQKL-IADIRKFAK-EGQMGPVKIMAkD 65
                46777999********99988885555.********9.8888887777744 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.58
   PF14196.1  10 snerraelfaalykeleeeigde 32 
                 s e +a+ +++++ ++  ++ ++
  MMETSP0890-20130614|8659_1  95 SQEAMASAMKSVTTAMI-RMNKA 116
                 34444444444444443.22222 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0032
   PF14196.1  16 elfaalykele.eeigdeeaeevireaieafgekrgkkiae 55 
                 e+++ l++ ++ ee+++ee e+++ + + ++g + g+++ e
  MMETSP0890-20130614|8659_1 141 EVMGDLLDDAMeEEGDEEEQEKIVGQVLDEIGINFGDSVPE 181
                 55666665555399999***************998887765 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.6    0.0003      0.69      64     101 ..      12      49 ..       9      53 .. 0.91
   2 ?    2.3   0.1     0.053   1.2e+02       4      27 ..      73      96 ..      70     121 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  PF01920.15  64 keeLeerketlekeiktlekqleklekeleelkeelyk 101
                 ke L ++k +++k i++l+k+  +lek+ ++l + ++k
  MMETSP0890-20130614|8659_1  12 KEVLRKNKREIQKAIRELDKERGNLEKQEQKLIADIRK 49 
                 77899***************************999997 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.053
                ---HHHHHHHHHHHHHHHHHHHHH CS
  PF01920.15  4 inkfqqlqqqlqklaqqikqletq 27
                i kf +l++ l ++  ++++++ q
  MMETSP0890-20130614|8659_1 73 ITKFIELRSHLNAVSLKLQTVKSQ 96
                789999999999999999999877 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.1    0.0015       3.4      86     226 ..      14     144 ..       8     164 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0015
   PF13166.1  86 tLgeenkeiekeieelkkelkkleekleelekelekkekekekakaklkekawkklakkkeselkealkglkkkknykekllkelkseeikkssllsdeelkakikalkesekpeialltlsvpeldeiekteilekkivg 226
                 +L +++ ei+k+i+el ke+ +le++ ++l + ++k  ke   ++  +k  a++ l++  ++ +++ +  l++  n+ + +l+++ks+  ++++ + ++   a i++ k+ + p+++++     +++  ++ + l+++++g
  MMETSP0890-20130614|8659_1  14 VLRKNKREIQKAIRELDKERGNLEKQEQKLIADIRKFAKE--GQMGPVKIMAKD-LVR-TRTYITK-FIELRSHLNAVSLKLQTVKSQ--EAMASAMKSVTTAMIRMNKAVNVPTVQKIM---LNFQRENERAELTQEVMG 144
                 4566677777777777777777777777777776665444..334444444433.322.3445554.445666666777777777765..455555555555556665666666665553...344444445555555554 PP

>> PF13835.1  Domain of unknown function (DUF4194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5    0.0025       5.6     102     138 ..      18      54 ..      10      77 .. 0.91
   2 ?    3.7   0.8     0.015        33      57     132 ..      96     169 ..      71     172 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0025
   PF13835.1 102 sreeivealasflpesrdeaklkkridaairrlkelg 138
                 ++ ei++a++++ +e+++ +k+++++ a ir++++ g
  MMETSP0890-20130614|8659_1  18 NKREIQKAIRELDKERGNLEKQEQKLIADIRKFAKEG 54 
                 5789*****************************9887 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.015
   PF13835.1  57 eeeeersprllrrrsLsleesllLlvLRkklaeadsesgeervivsreeivealasflpesrdeaklkkridaair 132
                 +e+ +++ + ++++ ++ + ++ +    k++ +++  +++er+ +++e + ++l     e++de++++k + + ++
  MMETSP0890-20130614|8659_1  96 QEAMASAMKSVTTAMIRMNKAVNVPTVQKIMLNFQ--RENERAELTQEVMGDLLDDAMEEEGDEEEQEKIVGQVLD 169
                 33333335577777778888888888888999997..6799***************99999999999998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1361  (0.0995465); expected 273.4 (0.02)
Passed bias filter:                      652  (0.0476887); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.70
# Mc/sec: 787.37
//
Query:       MMETSP0890-20130614|8658_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-32  110.2   0.0      1e-14   53.8   0.1    3.2  3  PF00626.17 Gelsolin repeat
  ------ inclusion threshold ------
      0.071   12.6   0.0       0.27   10.7   0.0    1.9  2  PF13220.1  Protein of unknown function (DUF4028)


Domain annotation for each model (and alignments):
>> PF00626.17  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   1.5e-18     1e-14      10      75 ..      48     120 ..      41     121 .. 0.96
   2 !   31.8   0.0   1.1e-11   7.6e-08       4      45 ..     162     204 ..     160     222 .. 0.81
   3 !   20.8   0.0     3e-08    0.0002       9      45 ..     276     312 ..     271     338 .. 0.90

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.5e-18
                 SSGGGEBTTSEEEEEESS........EEEEEEH--SHHHHHHHHHHHHHHHHHHCTSTTEEEEEEEHHHHHHHH CS
  PF00626.17  10 lsqsslesgdvyLLdtgf........tiylWiGkgssqeeknfaadlaaeldseerfplpelirevqgkeparF 75 
                   +++++sgd+yL++ ++        +i++W+Gk+ +q+e + aa+ ++eld +++ ++p+++revq +e+  F
  MMETSP0890-20130614|8658_1  48 EEYGKFYSGDSYLVLVTKqeneklvhDIHFWLGKETTQDEMGVAAYKTVELD-DFFDGEPIQHREVQQHESQQF 120
                 5789************************************************.******************998 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.1e-11
                 EEEEECSSGGGEBTTSEEEEEESSEEEEEEH--.SHHHHHHHH CS
  PF00626.17   4 lppvvplsqsslesgdvyLLdtgftiylWiGkg.ssqeeknfa 45 
                 ++ + p++ +sl++gd+++Ld g t+y W+G++ s +e+ +++
  MMETSP0890-20130614|8658_1 162 KVAEMPCTRDSLNNGDCFILDLGATVYPWFGEEaSAFEKAKAG 204
                 678889***************************5555554444 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 3e-08
                 CSSGGGEBTTSEEEEEESSEEEEEEH--SHHHHHHHH CS
  PF00626.17   9 plsqsslesgdvyLLdtgftiylWiGkgssqeeknfa 45 
                 +l+ s+l s+dvy++d+g ++++++G+ +s +e+  a
  MMETSP0890-20130614|8658_1 276 DLKLSMLASDDVYIVDAGIEVFIYVGSAASDLERRSA 312
                 67889***********************999998665 PP

>> PF13220.1  Protein of unknown function (DUF4028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     4e-05      0.27       9      50 ..      55      99 ..      53     103 .. 0.89
   2 ?   -2.8   0.0      0.68   4.6e+03       6      16 ..     260     270 ..     256     273 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4e-05
   PF13220.1  9 ssnsflctvqnknGekyvkk...wfrkqenkeelGrPtfkevekd 50
                s +s+l  v +++ ek v     w+ k+  ++e+G  ++k ve d
  MMETSP0890-20130614|8658_1 55 SGDSYLVLVTKQENEKLVHDihfWLGKETTQDEMGVAAYKTVELD 99
                6789********99*99864445********************87 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.68
   PF13220.1   6 lkdssnsflct 16 
                 l d s  +lct
  MMETSP0890-20130614|8658_1 260 LSDESGKLLCT 270
                 7899999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 1181.30
//
Query:       MMETSP0890-20130614|8662_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-15   55.0   0.0    5.1e-12   45.0   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.7e-16   5.1e-12       3      39 .]       7      44 ..       5      44 .. 0.96
   2 !    8.5   0.0   0.00013       1.7       3      17 ..      51      65 ..      49      66 .] 0.87

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 3.7e-16
                EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
  PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                  +tl+gH++ V++vafsp  g +lasgS+D ti lWd
  MMETSP0890-20130614|8662_1  7 KMQTLQGHSGCVNSVAFSPGdGAVLASGSEDYTIILWD 44
                579**********************************9 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00013
                EEEEEESSSSSEEEE CS
  PF00400.27  3 ckatlrgHtspVtcv 17
                + +tl+gH+++V +v
  MMETSP0890-20130614|8662_1 51 QMQTLQGHSNWVGSV 65
                679*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 263.60
//
Query:       MMETSP0890-20130614|8664_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   63.1   2.7    2.6e-17   62.8   1.9    1.1  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
      0.096   11.4   0.1       0.12   11.1   0.1    1.1  1  PF00913.14 Trypanosome variant surface glycoprotein (A-type)
        0.2   10.6   1.9       0.26   10.2   1.3    1.1  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   1.9   5.6e-21   2.6e-17       1      87 [.      27     111 ..      27     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 5.6e-21
  PF00428.14   1 eptaadikavlkaagveveaerlkllvkalegkdikeliangsaklaaaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                 e++a++ik++l a g evea+++ l +k+l+gk ++eli +++a  ++ ++ + +++aa+++ +aa ee+k+eeeeEee+ dmG+g+
  MMETSP0890-20130614|8664_1  27 EVNADQIKSLLTATGNEVEAYWPILYAKFLKGK-VDELIFSVGAG-SGGGGGGDSGGAAGGEGEAAVEEEKKEEEEEEEEIDMGGGM 111
                 689****************************98.89999999888.47778888888888888888888888877678888***874 PP

>> PF00913.14  Trypanosome variant surface glycoprotein (A-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.7e-05      0.12      77     168 ..      12     101 ..       4     115 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.7e-05
  PF00913.14  77 eakaaaalaaalrkaaaalasllatlvkkaikaaaa......agylaGridEflnvlaqakgggnggCLansdggaataatetaidgcecklttsevt 168
                 + + +aala++ +  a+  a+++++l +++ + + a      a +l+G +dE +    + +ggg+g   ++s+g a   ++    + +e +++++e++
  MMETSP0890-20130614|8664_1  12 CLTIYAALALY-DGEAEVNADQIKSLLTATGNEVEAywpilyAKFLKGKVDELIFSVGAGSGGGGG---GDSGGAAGGEGE----AAVEEEKKEEEEE 101
                 66778888887.7777777777777777766666644444449**********9999888888888...333333333333....2222222222222 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.3   5.7e-05      0.26     222     246 ..      83     107 ..      70     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.7e-05
  PF01056.13 222 sgedseseeeeeeeeeeeeeeeiDv 246
                  g + e   eee++eeeeeeeeiD+
  MMETSP0890-20130614|8664_1  83 AGGEGEAAVEEEKKEEEEEEEEIDM 107
                 55566777899999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 401.55
//
Query:       MMETSP0890-20130614|8663_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-05   23.1   0.0     0.0001   22.3   0.0    1.4  1  PF13519.1 von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.6e-09    0.0001       4     127 ..      91     239 ..      89     281 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 7.6e-09
   PF13519.1   4 lvlDvSgSMnaedv..............sptrldaakaal...kdlldelp.gdrvglvafsgsaelvaplt.....sdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGednssdie.aasalkragi 127
                 +v+D+SgSM+a d+              s tr++++ +++   +++ ++l    ++ l +  ++  l++++      +  a +++++ s     +p g t+l + +++ + ++++           a iv+ +DGe++++d+e a++ l++  +
  MMETSP0890-20130614|8663_1  91 WVIDNSGSMSASDGhrfimegndrgrfvSSTRWEELCDSVefhASVAANLGaPTQFRLLNQPSGCPLNINVGygqplQEMAEIRNLIAS-----SPLGRTPLCQRIKEIIYEIRDVEqqlranNKHALIVIASDGEPSDGDVEqALRPLRDLPV 239
                 69**********************99999***********9988888887536699999999999999988643222334444444444.....56799999999988887765444444444578999999******8877646666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:01.01
# Mc/sec: 809.07
//
Query:       MMETSP0890-20130614|8672_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.77
# Mc/sec: 227.19
//
Query:       MMETSP0890-20130614|8669_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-13   50.1   6.2    3.7e-13   49.0   4.3    1.5  1  PF01124.13 MAPEG family
  ------ inclusion threshold ------
      0.022   13.4   0.9      0.031   12.9   0.6    1.3  1  PF06965.7  Na+/H+ antiporter 1


Domain annotation for each model (and alignments):
>> PF01124.13  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   4.3   5.4e-17   3.7e-13       2     128 ..       9     156 ..       8     157 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 5.4e-17
  PF01124.13   2 llyagllallllylslivvkerrkakiaigegkasa.......................rakddalppklqraqrahgNflEylplflllvllaeltgag.tglvallgaiflvaRvahalgy..iag.gpppgRslgflltllvllvlalaal 128
                 + +a+ lal + +l +++ ++r++++   ++++ +                         +        ++r   +  N  E+ p f++l+l+++  g   ++++ ++  ++l++R+aha++y  i++  p+p R+ g+++++++++++ala+l
  MMETSP0890-20130614|8669_1   9 AQCAAGLALKMAVLHYMTLRTRFQTGN--FTSGRQGllkedteivapvlftlklffcayGPVLS----TVERWTGCIRNANENEPYFMILALAFARSGLTiPSWAPTATYLYLAGRIAHAFVYtiIQDrLPQPTRGSGWTIAFAIMIAMALAVL 156
                 67899999***************9988..55543335555555666666666666554444444....7888*************************888***********************9888889999******************987 PP

>> PF06965.7  Na+/H+ antiporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   4.6e-06     0.031      98     138 ..     115     157 ..      88     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.6e-06
                 -----TTHHHHGGG--S..STTTT----SSS---HHHH----T CS
   PF06965.7  98 lggmivPaliylllnae..dpesvsGwaipaatDiAFalgvla 138
                 l+g i+ a +y++++    +p+  sGw+i+ a  iA al+vla
  MMETSP0890-20130614|8669_1 115 LAGRIAHAFVYTIIQDRlpQPTRGSGWTIAFAIMIAMALAVLA 157
                 7899999*******986225667789***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.73
# Mc/sec: 525.23
//
Query:       MMETSP0890-20130614|8675_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-43  148.0   0.3      3e-43  147.6   0.2    1.2  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.2   2.2e-47     3e-43       2     154 ..      58     213 ..      57     214 .. 0.86

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 2.2e-47
  PF00160.16   2 vdietss..kGrivieLfedkaPktvenFlklakeg....fYdgtkfhrvikgfmiqgGdpsgkgangeek.kaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVveg.mdvvekieavetde.kpeknvkiksvg 154
                 +d+++++  +Gri +e+ +d +Pkt+enF+ l++ g     ++g++fhrvi+gfm+qgGd++  +   +++    ge+++dE+  ++lkh  +G+l+ma+   +pn+ngsqFf++++++++lDgk++vFG++v+g +dvv++ie+v++++  ++++v+i ++g
  MMETSP0890-20130614|8675_1  58 FDVTIGGsaAGRIIMEIRGDVVPKTAENFRALCT-GekgfGFKGSSFHRVIPGFMCQGGDFTRGDG--TGGkSIYGEKFEDEN--FRLKHtGPGILSMANA--DPNTNGSQFFLCTAKTQWLDGKHVVFGQIVDGtFDVVKQIEKVGSESgDTSRPVIIADCG 213
                 7788877889***********************7.335678*******************887755..3222444446*****..57788688******87..59****************************9989*******977666688888*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.86
# Mc/sec: 601.88
//
Query:       MMETSP0890-20130614|8697_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   13.3   8.3      0.018   13.4   5.7    1.0  1  PF03344.10 Daxx Family
      0.027   14.1   0.4      0.029   13.9   0.3    1.2  1  PF08401.6  Domain of unknown function (DUF1738)
      0.028   13.7   3.3      0.027   13.7   2.3    1.1  1  PF14283.1  Domain of unknown function (DUF4366)
      0.065   12.9   4.3      0.067   12.8   2.9    1.1  1  PF08595.6  RXT2-like, N-terminal
      0.096   11.2  10.6      0.086   11.3   7.3    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
       0.13   11.6   8.5       0.12   11.8   5.9    1.1  1  PF09184.6  PPP4R2
       0.38    9.8   8.0       0.35    9.9   5.5    1.0  1  PF06524.7  NOA36 protein
       0.68    7.6  10.1       0.58    7.8   7.0    1.0  1  PF04147.7  Nop14-like family
        1.1    8.6   8.7        1.1    8.7   6.0    1.2  1  PF04546.8  Sigma-70, non-essential region
        1.2    6.9   7.5          1    7.1   5.2    1.0  1  PF02724.9  CDC45-like protein
        9.3    5.0   8.0        9.3    5.0   5.5    1.1  1  PF03896.11 Translocon-associated protein (TRAP), alpha subunit


Domain annotation for each model (and alignments):
>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   5.7   1.4e-05     0.018     439     476 ..      37      74 ..       1      77 [] 0.43

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
  PF03344.10 439 seeeekaekeedeeddekeeedkseeeeeeeeeeeeee 476
                    ++k e ++d++dd+ + ++ +e+eeeeee++++++
  MMETSP0890-20130614|8697_1  37 VYVDKKEEFDDDDDDDDADADEIEEKEEEEEEADDNAS 74 
                 23455555566666666665555555555555555554 PP

>> PF08401.6  Domain of unknown function (DUF1738)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   2.3e-05     0.029      73     112 ..      20      65 ..       1      74 [. 0.63

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.3e-05
   PF08401.6  73 qakelggqVrkGekstlvvyakt..iekekededek....eeeeee 112
                  a +lg +V kG+  + v++ k+  ++++++d+d+     ee+eee
  MMETSP0890-20130614|8697_1  20 RALALGRSVLKGSATSFVYVDKKeeFDDDDDDDDADadeiEEKEEE 65 
                 466789******9988888888744444433333336665333333 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.3   2.2e-05     0.027     170     216 ..      27      70 ..       2      76 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.2e-05
   PF14283.1 170 alagGGaayYfKfikpkqaekeaededldeedkgdedeeeedepeee 216
                  ++ G a  ++ + k+ + +++   +d d++d ++ +e+ee+e+e +
  MMETSP0890-20130614|8697_1  27 SVLKGSATSFVYVDKKEEFDDD---DDDDDADADEIEEKEEEEEEAD 70 
                 3556666666655554444444...3333344444444433333333 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.9   5.4e-05     0.067      39      84 ..      26      73 ..      11      77 .] 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.4e-05
   PF08595.6 39 rkvlsrkrkkk...kkepridedenelddededdeeeededeeeaeenp 84
                r+vl+  +  +    k++++d+d++++d +d d+ ee++e+eeea++n 
  MMETSP0890-20130614|8697_1 26 RSVLKGSATSFvyvDKKEEFDDDDDDDD-ADADEIEEKEEEEEEADDNA 73
                5566655555555666777777776555.66677777777777777775 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.3   6.9e-05     0.086      56      86 ..      42      72 ..       1      77 [] 0.45

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.9e-05
   PF10446.4 56 deddeeddddeDeddddd.dddeDdeddeldd 86
                  ++ +dddd+D+ d+d+ +++e++e+++ d+
  MMETSP0890-20130614|8697_1 42 K-EEFDDDDDDDDADADEiEEKEEEEEEADDN 72
                2.222222222222222202222222222222 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.9   9.5e-05      0.12     246     277 ..      42      73 ..      14      77 .] 0.62

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.5e-05
   PF09184.6 246 knkkaddeedddedsdyieekelkedeeedet 277
                 k++ +dd++ddd d+d+ieeke +e+e +d+ 
  MMETSP0890-20130614|8697_1  42 KEEFDDDDDDDDADADEIEEKEEEEEEADDNA 73 
                 23334555555555555555555555555443 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.5   0.00028      0.35     260     302 ..      32      73 ..       1      77 [] 0.44

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00028
   PF06524.7 260 kygdaksvnygyesdddeeesaedydeeededddddeeedets 302
                   + +  v+  +e ddd+++++ d de e+ +++++ee d+++
  MMETSP0890-20130614|8697_1  32 SATSFVYVDKKEEFDDDDDDDDADADEIEE-KEEEEEEADDNA 73 
                 223333344455666666666666665433.333333334333 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.0   0.00046      0.58     345     380 ..      39      72 ..       5      77 .] 0.58

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00046
   PF04147.7 345 vededeeeddddeeeeeedvdedeeeedeedeesdd 380
                 v++++e++dddd++  + d+de ee+e+ee+e +d+
  MMETSP0890-20130614|8697_1  39 VDKKEEFDDDDDDD--DADADEIEEKEEEEEEADDN 72 
                 45566666665544..23333322233333333332 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.0   0.00086       1.1      40      72 ..      42      71 ..      11      77 .] 0.50

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00086
   PF04546.8 40 eaeeeseddeeeeeddddddededeeeeseead 72
                ++e +++dd++++++d+ ++++e+ee   e++d
  MMETSP0890-20130614|8697_1 42 KEEFDDDDDDDDADADEIEEKEEEEE---EADD 71
                12222222222222212222222222...2222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.2   0.00084         1     133     162 ..      43      72 ..       5      77 .] 0.51

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00084
   PF02724.9 133 eesdedsdseddeeeeessasekrksesde 162
                 ee d+d+d++d + +e ++++e++++ +d+
  MMETSP0890-20130614|8697_1  43 EEFDDDDDDDDADADEIEEKEEEEEEADDN 72 
                 222333333333333333333323233322 PP

>> PF03896.11  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.5    0.0075       9.3      40      72 ..      44      70 ..      15      77 .] 0.38

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0075
  PF03896.11 40 eaeddvvdedeedeaeveedekteaeeeedeee 72
                e  dd   +d++d+a    de +e eeee+e +
  MMETSP0890-20130614|8697_1 44 EF-DD---DDDDDDADA--DEIEEKEEEEEEAD 70
                11.11...111111111..11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      574  (0.0419836); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.92
# Mc/sec: 200.56
//
Query:       MMETSP0890-20130614|8737_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-12   45.4  30.4    1.7e-10   41.0  21.1    2.4  1  PF13865.1 C-terminal duplication domain of Friend of PRMT1


Domain annotation for each model (and alignments):
>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0  21.1   1.3e-14   1.7e-10       4      75 ..      41     113 ..       2     114 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.3e-14
   PF13865.1   4 rkgsrggkfrp.rgrgarrgrsrgrggRkgrgkkkkrkkvtredLDkeLDqYM..sttkskLDaeLdaYmkkkee 75 
                 ++g++gg+ ++ rgrg+ +gr+rg+g  ++rgkk  + k ++e+LD+ +D+Y+     ++kLD++Ld+Y++kk+e
  MMETSP0890-20130614|8737_1  41 KRGRGGGRGGRgRGRGRDGGRGRGKGKQGKRGKK--ASKPSAESLDQDMDDYWykNDPQKKLDNDLDDYWNKKDE 113
                 3333333333335666666666665555544444..7999**************98899**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 482.74
//
Query:       MMETSP0890-20130614|8769_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-18   63.2   0.1    1.3e-17   62.8   0.0    1.2  1  PF05186.8 Dpy-30 motif


Domain annotation for each model (and alignments):
>> PF05186.8  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   9.6e-22   1.3e-17       2      42 .]      53      93 ..      52      93 .. 0.96

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 9.6e-22
   PF05186.8  2 arkYLnktvaPiLlqGLtelakeRPeDPiefLaeyLlknrs 42
                 r+YL++tv+PiLl+G+  l keRP++P+e+L++yL+kn++
  MMETSP0890-20130614|8769_1 53 IRAYLDTTVVPILLDGMSQLVKERPANPVEWLGTYLIKNNP 93
                59*************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 406.65
//
Query:       MMETSP0890-20130614|8775_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-12   44.8   2.0    6.2e-12   44.8   1.4    1.8  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.16   10.0   2.1        4.1    5.3   0.1    2.0  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.079   5.4e+02      34      39 .]       3       8 ..       2       8 .. 0.85
   2 !   44.8   1.4   9.1e-16   6.2e-12       2      39 .]      13      50 ..      12      50 .. 0.97

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.079
                EEEEEE CS
  PF00400.27 34 tirlWd 39
                ++r+W+
  MMETSP0890-20130614|8775_1  3 KVRIWN 8 
                69***7 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 9.1e-16
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                ec ++l gH s+Vt++a+s dg  l+s+S+D+t+rlW+
  MMETSP0890-20130614|8775_1 13 ECSRVLVGHGSWVTSIAYSRDGITLVSASKDHTCRLWN 50
                89***********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1   0.00061       4.1     242     253 ..       3      14 ..       2      29 .. 0.85
   2 ?    5.1   0.2   0.00067       4.6     234     248 ..      37      51 ..      22      52 .] 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00061
   PF11715.3 242 kLRvWnletgqc 253
                 k+R+Wn++t  c
  MMETSP0890-20130614|8775_1   3 KVRIWNTDTSEC 14 
                 89*********9 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00067
   PF11715.3 234 vftlsrDgkLRvWnl 248
                 +++ s D++ R+Wn+
  MMETSP0890-20130614|8775_1  37 LVSASKDHTCRLWNV 51 
                 5699**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.75
# Mc/sec: 166.15
//
Query:       MMETSP0890-20130614|8801_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   20.6   0.5    0.00078   19.1   0.1    1.7  2  PF04089.9 BRICHOS domain


Domain annotation for each model (and alignments):
>> PF04089.9  BRICHOS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.7e-08   0.00078      28      90 ..       4      67 ..       3      70 .. 0.77
   2 ?   -0.7   0.0     0.085   1.2e+03      40      63 ..      81     104 ..      74     113 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.7e-08
   PF04089.9 28 Cyimkldkesipslealtellknf.qaesklpqtklveeelvvv.seekvkdlsflgskiselCg 90
                C++  l++ ++++ ++l+  ++    a+++  + k+++++  +  + ++++++s ++++i  +Cg
  MMETSP0890-20130614|8801_1  4 CFVQSLNQREMMD-RTLQSSFEASsRAQPEKKKRKRPRKKNESSyVLQPIQNVSSFSHEIPMHCG 67
                ***********99.66666666554555555556666666666669******************8 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.085
   PF04089.9  40 slealtellknfqaesklpqtklv 63 
                 s+ + t  l ++qa s  pqt ++
  MMETSP0890-20130614|8801_1  81 SIYDTTSHLLEQQATSMDPQTMPP 104
                 555555555566666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 452.65
//
Query:       MMETSP0890-20130614|8812_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 212.25
//
Query:       MMETSP0890-20130614|8848_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-14   52.7   0.0    2.9e-14   52.6   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    4.8e-14   51.6   0.1    4.3e-06   26.3   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
      2e-05   23.8   0.8      0.099   12.1   0.1    2.2  2  PF00515.23 Tetratricopeptide repeat
    3.5e-05   23.1   0.0       0.18   11.5   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    0.00012   21.5   0.2       0.26   10.8   0.0    2.0  2  PF13414.1  TPR repeat
    0.00021   21.7   0.1    0.00025   21.5   0.1    1.1  1  PF13432.1  Tetratricopeptide repeat
    0.00023   20.7   1.3       0.14   12.0   0.2    2.2  2  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   14.4   0.5        2.5    7.9   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
      0.021   14.8   0.1      0.068   13.2   0.0    1.8  1  PF13431.1  Tetratricopeptide repeat
      0.022   15.2   0.1        4.9    7.9   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
      0.048   13.5   0.1        5.6    6.9   0.0    2.0  2  PF12688.2  Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   2.3e-17   2.9e-14      21      69 ..       2      51 ..       1      52 [] 0.98

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 2.3e-17
   PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleyl 69
                ydeA  lye+al++  + lg++hp +a +ln+la  ++ +g++deA++++
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKIgEEALGPNHPGVAQSLNHLAGFLQDQGKHDEAKPLY 51
                9**********************************************998 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   3.5e-09   4.3e-06      18      41 ..       2      25 ..       1      26 [. 0.97
   2 !   23.8   0.0     2e-08   2.5e-05       1      25 [.      27      51 ..      27      52 .] 0.96

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.5e-09
   PF13374.1 18 yeeAlaleeealairrrllGddHP 41
                y+eA +l+e+al i ++ lG++HP
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKIGEEALGPNHP 25
                9**********************9 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2e-08
   PF13374.1  1 taaalnnLAlalrargryeeAlale 25
                +a +ln+LA  l+++g+++eA +l+
  MMETSP0890-20130614|8848_1 27 VAQSLNHLAGFLQDQGKHDEAKPLY 51
                799********************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1     8e-05     0.099      17      30 ..       2      15 ..       1      18 [. 0.94
   2 !   10.7   0.0   0.00022      0.27       1      24 [.      28      51 ..      28      52 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8e-05
                HHHHHHHHHHHHHH CS
  PF00515.23 17 ydeAleyyekALel 30
                ydeA   ye+AL++
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKI 15
                9***********98 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00022
                HHHHHHHHHHHHHTT-HHHHHHHH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyy 24
                a++l+ l+  ++ +gk+deA   y
  MMETSP0890-20130614|8848_1 28 AQSLNHLAGFLQDQGKHDEAKPLY 51
                6789999999**********9887 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00041      0.52      15      33 ..       2      20 ..       1      23 [. 0.82
   2 !   11.5   0.0   0.00015      0.18       1      22 [.      30      51 ..      30      52 .] 0.94

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00041
   PF13176.1 15 yekAielyeraLaltkdpl 33
                y++A  lyeraL++ ++ l
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKIGEEAL 20
                9*********998876655 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00015
   PF13176.1  1 allnLarlysrlgdyekAiely 22
                +l+ La   +++g++++A  ly
  MMETSP0890-20130614|8848_1 30 SLNHLAGFLQDQGKHDEAKPLY 51
                799***************9998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00021      0.26      19      37 ..       2      25 ..       1      27 [. 0.77
   2 !    9.5   0.0   0.00052      0.65       3      26 ..      28      51 ..      26      52 .] 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00021
   PF13414.1 19 ydeAieayekAleld.....pnna 37
                ydeA  +ye+Al++      pn++
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKIGeealgPNHP 25
                9***********974333338887 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00052
   PF13414.1  3 AealkelGnalfkegdydeAieay 26
                A++l+ l+  l  +g++deA  +y
  MMETSP0890-20130614|8848_1 28 AQSLNHLAGFLQDQGKHDEAKPLY 51
                999*****************9888 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1     2e-07   0.00025      13      53 ..       2      50 ..       1      52 [] 0.94

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2e-07
   PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaal 53
                ydeA +++e+al+          P+ a+ l  la +l ++g++deA  l
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKIGeealgpnhPGVAQSLNHLAGFLQDQGKHDEAKPL 50
                9*******************99************************755 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00011      0.14      17      30 ..       2      15 ..       1      19 [. 0.91
   2 !    8.1   0.0    0.0019       2.4       2      24 ..      29      51 ..      28      52 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHHH CS
  PF07719.12 17 yeeAleafekAlel 30
                y+eA+ ++e+Al++
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKI 15
                9***********98 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0019
                HHHHHHHHHHHHTT-HHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleaf 24
                + l+ l+  +  +g+++eA+ ++
  MMETSP0890-20130614|8848_1 29 QSLNHLAGFLQDQGKHDEAKPLY 51
                6789999999*********9887 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.002       2.5      17      30 ..       2      15 ..       1      19 [. 0.94
   2 ?    5.3   0.0     0.014        17       2      22 ..      29      49 ..      28      52 .] 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.002
                HHHHHHHHH---HH CS
   PF13181.1 17 ydkAkeylekalel 30
                yd+Ak  +e+al++
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKI 15
                9***********98 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.014
                --TTT---HHHHTT-HHHHHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAke 22
                ++++ l+  + + G++d+Ak 
  MMETSP0890-20130614|8848_1 29 QSLNHLAGFLQDQGKHDEAKP 49
                56777888899********96 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.5e-05     0.068       1      33 [.       8      48 ..       8      49 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.5e-05
   PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                lye+al++      Pn+   a+++n LA +l+++G+++eA+
  MMETSP0890-20130614|8848_1  8 LYERALKIGeealgPNHpgvAQSLNHLAGFLQDQGKHDEAK 48
                68888888444555777777*******************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0039       4.9      17      33 ..       2      18 ..       1      31 [. 0.73
   2 ?    6.1   0.0     0.015        18       6      24 ..      33      51 ..      28      52 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0039
   PF13428.1 17 pdeAiallrralalaPd 33
                +deA  l++ral+ + +
  MMETSP0890-20130614|8848_1  2 YDEAKPLYERALKIGEE 18
                79*********985543 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.015
   PF13428.1  6 alarallalGdpdeAiall 24
                 la +l ++G +deA  l+
  MMETSP0890-20130614|8848_1 33 HLAGFLQDQGKHDEAKPLY 51
                589999*********9886 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0045       5.6      18      31 ..       3      16 ..       1      23 [. 0.87
   2 ?    5.2   0.0     0.015        18       5      24 ..      32      51 ..      28      52 .] 0.84

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0045
   PF12688.2 18 akAvplYrrAlaaG 31
                ++A plY+rAl+ G
  MMETSP0890-20130614|8848_1  3 DEAKPLYERALKIG 16
                79*********988 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.015
   PF12688.2  5 feragarDstGeeakAvplY 24
                   ag+    G++++A plY
  MMETSP0890-20130614|8848_1 32 NHLAGFLQDQGKHDEAKPLY 51
                5679999999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 204.28
//
Query:       MMETSP0890-20130614|8854_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-25   89.3   0.0    2.4e-25   89.0   0.0    1.1  1  PF08547.7  Complex I intermediate-associated protein 30 (CIA30)
     0.0021   17.6   0.0     0.0052   16.3   0.0    1.6  2  PF13768.1  von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.083   12.5   0.0       0.12   12.0   0.0    1.2  1  PF02563.11 Polysaccharide biosynthesis/export protein


Domain annotation for each model (and alignments):
>> PF08547.7  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   5.4e-29   2.4e-25       7     155 ..      22     190 ..      16     192 .. 0.86

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 5.4e-29
   PF08547.7   7 esldkwtavnDkvmGGlSksslels...kedktavFsGnlslenrgGFasvrtkkrkesldlseyeglelrvkGdgrtYklnlktesk....qsglsyqadfetkkgewqtvkipfsdfvptfrGrvvedape..ldlskiksigllls..............dkqegpfeL 155
                 ++  +w  + D+ mGG+S  + e     + +++++F G+++++ +gGF+s+r   + e+   s+ ++l+l+ +Gdg+tYk+ l++ ++    +s+ s+q+d++t +++w ++k++++df+p++ G  v++ +   l +++ k+igl+ls              ++   pfeL
  MMETSP0890-20130614|8854_1  22 QKPLQWWRLADNCMGGMSATKHEAIvdaTGTQQLRFAGEINTN-GGGFTSIRA--NIENGLPSDTSALYLKYRGDGKTYKVLLSNGEStgpfSSNPSWQHDLPTAANQWCETKLQLKDFKPSIGGTSVKQTADlaLRPNEQKQIGLMLSlllsdgsanppstfGQGIFPFEL 190
                 4455688899*********9999887775679**********9.*********..5666667999********************98899*9************************************99877446899*********988888777777655555555555 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.55   2.5e+03      63      75 ..       7      19 ..       3      45 .. 0.61
   2 !   16.3   0.0   1.2e-06    0.0052      47     115 ..     114     180 ..      88     186 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.55
   PF13768.1 63 qellqkvkelead 75
                ++ +q++++l a 
  MMETSP0890-20130614|8854_1  7 EDMKQAIEALRAT 19
                4455555554442 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.2e-06
   PF13768.1  47 arplfpgsravssaelqellqkvkeleadlGasnlegaLkealrqp.akpgearhvlllsdgsstsgaer 115
                 +++++       + +  e++  +k ++++ G++ ++++ ++alr   +k+ +    lllsdgs +++++ 
  MMETSP0890-20130614|8854_1 114 PSWQHDLPT--AANQWCETKLQLKDFKPSIGGTSVKQTADLALRPNeQKQIGLMLSLLLSDGS-ANPPST 180
                 333333322..23344566667777*******************44699999***********.676654 PP

>> PF02563.11  Polysaccharide biosynthesis/export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.12      32      68 ..      43      79 ..      12      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.7e-05
  PF02563.11 32 agvtVdadGtislPlvGrvkvaGltveevreeitsal 68
                 ++ Vda Gt +l ++G+++  G   + +r+ i++ l
  MMETSP0890-20130614|8854_1 43 HEAIVDATGTQQLRFAGEINTNGGGFTSIRANIENGL 79
                3889*****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:01.49
# Mc/sec: 320.05
//
Query:       MMETSP0890-20130614|8867_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-13   48.8   0.1    9.3e-13   48.6   0.0    1.1  1  PF12681.2  Glyoxalase-like domain
    2.4e-08   33.9   0.2    3.5e-07   30.1   0.1    2.0  1  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.4e-16   9.3e-13       1     107 [.      11     125 ..      11     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.4e-16
   PF12681.2   1 lpvsdleaaraFYeklL...Gfevaeeegdfvtlslglalgsgvrellgldepeapggggvhlafev...edldalvarlkaaGakvlgepedepw...ggrefyvrDPdGnliel 107
                 l v+d++aa++FY  +L   G +     +++  + +g  ++ ++    +ld+ +a+ g+g+h++f     + +da++a+++aaGak  g+p  +p     ++ +++rD dG++ie 
  MMETSP0890-20130614|8867_1  11 LGVNDFAAAVKFYDYVLptvGAKRILALEENKAMAYG-KYFPEFWINGPLDKKPATVGNGTHVSFLAssrKQVDAFYAAAVAAGAKDEGKPGVRPEysnAYYGCFLRDLDGHKIEA 125
                 679*************988888888877776666666.355666666677899999*********9988899********************9776343679************96 PP

>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   5.2e-11   3.5e-07       2     127 ..       6     124 ..       5     125 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 5.2e-11
                 EEEEEEEES-HHHHHHHHHHH...H--EEEEEEEESCSCCEEEEEEEETSSCEEEEEEEECCTTSCTCHHHEECSEEEEEEEECEHHHHHHHHHHHHH-SGEEEEEEC..HHHHCEEEEEEEE-TT--EEE CS
  PF00903.20   2 idhvalavgdleksldFYtkv...LGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvvaepg..rhyfgalysfyfrDpdGille 127
                 i hv+l v+d +++++FY  v   +G+k +   +    + +++++    ++ +i+ +l   p +  ++         hv f+a +  +v++++  + +ag k  ++pg   +y +a y+ + rD dG+++e
  MMETSP0890-20130614|8867_1   6 ISHVSLGVNDFAAAVKFYDYVlptVGAKRILALE----ENKAMAYGKYFPEFWINGPLDKKPATVGNGT--------HVSFLASSRKQVDAFYAAAVAAGAKDEGKPGvrPEYSNAYYGCFLRDLDGHKIE 124
                 89*******************4444666666666....4555555555566666666666666666666........***********************999888874378999****9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:01.04
# Mc/sec: 294.94
//
Query:       MMETSP0890-20130614|8860_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-06   26.4   0.0    0.00068   18.9   0.0    2.4  2  PF08450.7  SMP-30/Gluconolaconase/LRE-like region
  ------ inclusion threshold ------
      0.017   14.9   0.2       0.14   12.0   0.0    2.6  2  PF01436.16 NHL repeat
      0.038   12.9   0.0        3.7    6.4   0.0    2.2  2  PF07995.6  Glucose / Sorbosone dehydrogenase
      0.068   13.1   0.0          8    6.7   0.0    3.3  3  PF07494.6  Two component regulator propeller


Domain annotation for each model (and alignments):
>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     2e-07   0.00068      59     127 ..      39     113 ..       8     129 .. 0.70
   2 !    4.9   0.0    0.0039        13     194     224 ..     138     167 ..     133     192 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2e-07
   PF08450.7  59 krglalldlasgelttladlee..dekplnrfNDgkvdpdGrlwfGtmgdeeakgkev....galyrldpdgkle 127
                 +++++++d ++ge   + ++ +   e   n +ND++v pdGrl+++t g +  +g  +     +++++d +g++e
  MMETSP0890-20130614|8860_1  39 SDQILMYDASTGEYMDVLAAGDgtAEGLVNGPNDMAVGPDGRLYVTTQGSTVISGSLEyqfsSEVIVFDLSGSAE 113
                 455666788888766666663334444899*****************9988766664456777777777765544 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0039
   PF08450.7 194 eGnvwvAvwgggkvvridpdGklleeiklPa 224
                 +++++v  + gg+v+++++dG+l++++++  
  MMETSP0890-20130614|8860_1 138 DNYLFVSDF-GGGVRKYSTDGTLMTTYQTAI 167
                 677888888.789************999753 PP

>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     4e-05      0.14       2      18 ..      68      84 ..      68      84 .. 0.94
   2 ?   -2.3   0.0       1.4   4.9e+03      14      21 ..     115     122 ..     115     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4e-05
                SSBEEEEE-TT--EEEE CS
  PF01436.16  2 nnPhGvavdsdGdvyVa 18
                n P++ av +dG++yV+
  MMETSP0890-20130614|8860_1 68 NGPNDMAVGPDGRLYVT 84
                57**************8 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
                 -EEEEEGC CS
  PF01436.16  14 dvyVaDse 21 
                 +v+++D+e
  MMETSP0890-20130614|8860_1 115 QVFITDVE 122
                 699***86 PP

>> PF07995.6  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0011       3.7     260     324 ..      19      86 ..      10      95 .. 0.55
   2 ?    4.7   0.0    0.0035        12     106     129 ..     167     188 ..     117     211 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0011
   PF07995.6 260 fytgdafpewkgdllvgalksqklvrleldegek...vveeerlleelgeRiRdveqgpdGalyvltd 324
                 +y+   f+ + g l+v++  s ++++ + ++ge    +++ + + e l +   d+++gpdG+lyv+t 
  MMETSP0890-20130614|8860_1  19 MYRPYGFTFYSGILYVSSFMSDQILMYDASTGEYmdvLAAGDGTAEGLVNGPNDMAVGPDGRLYVTTQ 86 
                 55555566666666666666666666666544223322222222234444455777788888887776 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0035
   PF07995.6 106 epkkesgghfGsrlafgpdgtLyi 129
                 +p+  ++g f + laf+pdg+Ly+
  MMETSP0890-20130614|8860_1 167 IPD--ETGTFVGNLAFAPDGYLYV 188
                 344..6677888888888888887 PP

>> PF07494.6  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0023         8       8      23 ..      71      86 ..      66      87 .. 0.85
   2 ?   -2.9   0.0       3.1   1.1e+04      10      18 ..     135     141 ..     124     145 .. 0.59
   3 ?    2.3   0.0     0.062   2.1e+02       4      21 ..     172     189 ..     169     191 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0023
   PF07494.6  8 taileDsdGrlWvGte 23
                ++++  +dGrl+v t 
  MMETSP0890-20130614|8860_1 71 NDMAVGPDGRLYVTTQ 86
                578999*******997 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.1
   PF07494.6  10 ileDsdGrl 18 
                 i+e  d++l
  MMETSP0890-20130614|8860_1 135 IFE--DNYL 141
                 556..5555 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.062
   PF07494.6   4 snnvtaileDsdGrlWvG 21 
                 +++v  ++  +dG+l+v 
  MMETSP0890-20130614|8860_1 172 GTFVGNLAFAPDGYLYVV 189
                 56677899999*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|8882_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       124  (0.00906963); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.33s 00:00:00.63 Elapsed: 00:00:00.59
# Mc/sec: 227.45
//
Query:       MMETSP0890-20130614|8873_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.45s 00:00:01.01 Elapsed: 00:00:01.20
# Mc/sec: 535.19
//
Query:       MMETSP0890-20130614|8936_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.4   2.6      0.022   14.4   1.8    1.8  2  PF12254.3 DNA polymerase alpha subunit p180 N terminal
        0.1   12.4   0.4       0.31   10.8   0.0    1.9  2  PF13054.1 Protein of unknown function (DUF3915)


Domain annotation for each model (and alignments):
>> PF12254.3  DNA polymerase alpha subunit p180 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.8   3.2e-06     0.022      31      54 ..      88     110 ..      86     117 .. 0.86
   2 ?   -3.1   0.1      0.91   6.2e+03       2      14 ..     198     210 ..     197     214 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.2e-06
   PF12254.3  31 deeeYrkivrkrleeddFivdDdG 54 
                 dee Y+++ r+  ++ddFi+dD+ 
  MMETSP0890-20130614|8936_1  88 DEESYNSQLRED-KKDDFIEDDNS 110
                 9***********.55*******94 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.91
   PF12254.3   2 akLraaReggkkr 14 
                 a++r+ R+++++ 
  MMETSP0890-20130614|8936_1 198 ANIREERNSQEEL 210
                 5666666666554 PP

>> PF13054.1  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       0.5   3.4e+03      83      94 ..      97     108 ..      82     116 .. 0.51
   2 ?   10.8   0.0   4.5e-05      0.31      23      64 ..     201     242 ..     196     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.5
   PF13054.1  83 rdddkdnnkddk 94 
                 r+d+kd++ +d 
  MMETSP0890-20130614|8936_1  97 REDKKDDFIEDD 108
                 344444443333 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 4.5e-05
   PF13054.1  23 rrerekerevkkkrtavcnvlaniaiGteislltlkgngtfr 64 
                 r er+ ++e +++r ++c+  +n+   t  s+ tlk n++  
  MMETSP0890-20130614|8936_1 201 REERNSQEELQHQRISICQTPTNMDFSTTESIQTLKKNSSHD 242
                 568999999****************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.81
# Mc/sec: 852.04
//
Query:       MMETSP0890-20130614|8972_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-11   41.8   0.4    0.00014   21.4   0.1    2.5  2  PF13516.1 Leucine Rich repeat
    0.00035   19.9   0.5     0.0023   17.3   0.2    2.1  2  PF12799.2 Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.019   14.7   0.3       0.74    9.6   0.0    2.2  2  PF12826.2 Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.3e-07    0.0015       3      23 ..      13      33 ..      12      34 .. 0.94
   2 !   21.4   0.1     3e-08   0.00014       1      23 [.      39      61 ..      39      65 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.3e-07
   PF13516.1  3 nLtsLdLsnNqigdeGlsaLa 23
                +Lt LdL + +igdeG++a+a
  MMETSP0890-20130614|8972_1 13 SLTKLDLTSQNIGDEGAKAIA 33
                8*******************8 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 3e-08
   PF13516.1  1 lknLtsLdLsnNqigdeGlsaLa 23
                +++L++L L+ N+igdeG+ aLa
  MMETSP0890-20130614|8972_1 39 NTSLQTLWLGVNKIGDEGANALA 61
                789******************98 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1   0.00092       4.2      24      38 ..      12      26 ..       2      37 .. 0.75
   2 !   17.3   0.2   5.1e-07    0.0023       2      38 ..      13      54 ..      12      72 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00092
   PF12799.2 24 pnLktLnLsnNpisd 38
                ++L+ L+L++ +i d
  MMETSP0890-20130614|8972_1 12 RSLTKLDLTSQNIGD 26
                489******999987 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 5.1e-07
   PF12799.2  2 nLevLdLsnNnIkd.....lppelanLpnLktLnLsnNpisd 38
                +L++LdL++ nI d     +   la  ++L+tL+L  N+i d
  MMETSP0890-20130614|8972_1 13 SLTKLDLTSQNIGDegakaIATALATNTSLQTLWLGVNKIGD 54
                799******99977666666555*****************88 PP

>> PF12826.2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0072        33      41      59 ..      22      40 ..       5      45 .. 0.72
   2 ?    9.6   0.0   0.00016      0.74       5      29 ..      46      70 ..      40      73 .] 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0072
   PF12826.2 41 ddiGeevAqsivefFenee 59
                ++iG+e A++i + +++++
  MMETSP0890-20130614|8972_1 22 QNIGDEGAKAIATALATNT 40
                4677777777777666655 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00016
   PF12826.2  5 aLGIrhVGektAklLakhFgsldaL 29
                 LG+ ++G + A++La + g+   L
  MMETSP0890-20130614|8972_1 46 WLGVNKIGDEGANALATALGTNTSL 70
                49**************999876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 312.38
//
Query:       MMETSP0890-20130614|9010_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0099   15.4   3.7      0.013   15.1   2.6    1.1  1  PF01017.15 STAT protein, all-alpha domain
  ------ inclusion threshold ------
      0.029   14.0   1.1       0.04   13.6   0.8    1.2  1  PF07889.7  Protein of unknown function (DUF1664)
      0.035   13.9   1.7      0.053   13.2   1.2    1.2  1  PF05377.6  Flagella accessory protein C (FlaC)
       0.11   12.5   1.9       0.17   11.9   1.3    1.3  1  PF00804.20 Syntaxin
       0.19    9.8   3.3       0.22    9.5   2.3    1.0  1  PF07902.6  gp58-like protein
        0.2   11.1   3.0       0.18   11.3   1.4    1.4  2  PF12761.2  Actin cytoskeleton-regulatory complex protein END3
       0.28   10.9   2.8       0.39   10.4   1.9    1.2  1  PF06009.7  Laminin Domain II
       0.39   10.4   5.1        0.7    9.6   3.5    1.5  1  PF14070.1  Putative motility protein
        2.3    6.7   9.9        2.4    6.6   6.8    1.0  1  PF11498.3  Transcriptional activator LAG-3


Domain annotation for each model (and alignments):
>> PF01017.15  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.6   8.2e-06     0.013       8      89 ..       6      96 ..       2     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.2e-06
  PF01017.15  8 esklealknsvqeveqdikkLedvqeefdfkyktlqslkele.......anrnslkealkqekllleemls..kLdqkRkelvekmkelln 89
                ++++++++n+v  + qd ++L ++ ++ + ++++l  l +++           ++k  ++++  +l++ l   kL   Rk++v   ++  +
  MMETSP0890-20130614|9010_1  6 QNDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQLTLLMQQSnwvgllgLYLPQRKVLTQRKAVVLDQYLPqrKLPTHRKAIVLDQQGNAQ 96
                689******************************99999888855555544444555656666666666666999*******9998776655 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   2.6e-05      0.04      85     122 ..       3      40 ..       1      45 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.6e-05
   PF07889.7  85 keikeevteiredlsaikedvkslkqvvegLesklesl 122
                 ++ ++++++ir+d+s+i++d +sl+q++ + ++ +++l
  MMETSP0890-20130614|9010_1   3 HDQQNDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQL 40 
                 56689999999999999999999999999999988877 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.2   3.5e-05     0.053       7      40 ..       7      40 ..       4      44 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.5e-05
   PF05377.6  7 nklsklstvvatvrkeleelsksvekikenvkdv 40
                n+++++   v+t+ ++ ++l ++ + +++n++++
  MMETSP0890-20130614|9010_1  7 NDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQL 40
                89*****************************987 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.3   0.00011      0.17      13      53 ..       6      46 ..       2      49 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
  PF00804.20 13 rgeiekisekveelkrlhsrilaspdpdkqtkeeleeltae 53
                +++i++i+++v+ +++ ++ ++  +d+ +q+ ++l  l+++
  MMETSP0890-20130614|9010_1  6 QNDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQLTLLMQQ 46
                789***********************766777777666665 PP

>> PF07902.6  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.3   0.00014      0.22     259     295 ..       5      41 ..       1      47 [. 0.89

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00014
   PF07902.6 259 isqeiknregavsrvqqdldsyqrrlqdaednysslt 295
                  +++i+n  ++vs ++qd++s+++++  +++n+ +lt
  MMETSP0890-20130614|9010_1   5 QQNDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQLT 41 
                 56789999*************************9998 PP

>> PF12761.2  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.4   0.00012      0.18     157     193 ..       4      40 ..       1      42 [. 0.92
   2 ?   -2.7   0.0       2.2   3.3e+03      67     184 ..      71      76 ..      60     105 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00012
   PF12761.2 157 kegkdlksvkedielieeQvevLeeylksrkeeLeql 193
                  +++d++++++d+ +i +  + L + +++ +++++ql
  MMETSP0890-20130614|9010_1   4 DQQNDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQL 40 
                 67899*******************************9 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.2
   PF12761.2  67 adsYlsklgvggksakekgtdfsatqdtdwEevrLrreLaeLeeklekvqkesekrkkksknesalvkkeleqLLkYkeeqlrelkeskskegkdlksvkedielieeQvevLeeylk 184
                  d+Yl                                                                                                                 
  MMETSP0890-20130614|9010_1  71 LDQYL----------------------------------------------------------------------------------------------------------------P 76 
                 34443................................................................................................................2 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.9   0.00025      0.39      30      68 ..       6      44 ..       2      48 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00025
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF06009.7 30 kaklsklngsveetnekvksankavrdarrsvrklekla 68
                ++++++++++v  + ++++s +++++  ++++++l+ l+
  MMETSP0890-20130614|9010_1  6 QNDINNIRNDVSTISQDAQSLTQTMDTTQQNIQQLTLLM 44
                455666666666666667777777777777777766655 PP

>> PF14070.1  Putative motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.5   0.00046       0.7      23      45 ..      27      48 ..      11      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00046
   PF14070.1 23 KkamDaqeenaaqllemmseisv 45
                 ++mD++++n +ql+ +m ++s+
  MMETSP0890-20130614|9010_1 27 TQTMDTTQQNIQQLTLLM-QQSN 48
                58****************.6654 PP

>> PF11498.3  Transcriptional activator LAG-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.8    0.0016       2.4     299     375 ..      22      97 ..       4     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0016
   PF11498.3 299 ngdrlpssasqpaqnpqqiaqlaqqqnkmrllqqqeqelqrieqqrrqqimqqqqqqqqqehrrqqmllqqqqqqqq 375
                 +++ l ++     qn qq++ l qq n + ll       +++  qr+  +++q   q++   +r+ ++l+qq + q+
  MMETSP0890-20130614|9010_1  22 DAQSLTQTMDTTQQNIQQLTLLMQQSNWVGLLGLYLP-QRKVLTQRKAVVLDQYLPQRKLPTHRKAIVLDQQGNAQR 97 
                 4467889999999******************987655.5678999********999988888888888878776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1101  (0.0805295); expected 273.4 (0.02)
Passed bias filter:                      831  (0.0607812); expected 273.4 (0.02)
Passed Vit filter:                       128  (0.0093622); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.44s 00:00:00.93 Elapsed: 00:00:00.86
# Mc/sec: 314.87
//
Query:       MMETSP0890-20130614|9047_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-09   38.1   0.0    2.6e-09   37.1   0.0    1.6  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.9e-13   2.6e-09       3     103 ..      48     137 ..      46     138 .. 0.93

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.9e-13
                 BEEEEEEEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE.EEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
  PF00169.24   3 keGyllkksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc.tvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                 ++Gyl k+s+ l+twk++yf L + +++y+ + +   +  p++ + l+++ +v ++ st        +  + +++ ++ s+ l a++  e+ +W +al  ++
  MMETSP0890-20130614|9047_1  48 RSGYLRKRSRFLRTWKRGYFRLYNERMCYYGDIN---DDVPRREVALQQLdRVLIDGST--------HLRLIWKNGNG-SFQLRADTMAEALDWARALTTAI 137
                 79*******************************9...8************766666665........9**********.*******************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.79
# Mc/sec: 1082.91
//
Query:       MMETSP0890-20130614|9095_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   14.2   0.1      0.015   13.9   0.1    1.2  1  PF05794.8 T-complex protein 11


Domain annotation for each model (and alignments):
>> PF05794.8  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.1e-06     0.015     309     395 ..      81     171 ..      51     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-06
   PF05794.8 309 gnskwtknlesialqlakevsaslsesgdsalseekkellkgqlskslqpespVyklvekrifkelreallats.......nkkkkalseaqks 395
                 ++s+++ +l+  al+l++ +++++ +++ ++++++ ++ ++g+l  + +++++V + v++r+ +++++ +l+ s       n   + ++e+  s
  MMETSP0890-20130614|9095_1  81 KESNIKYELKFEALELCEYLEERVRTTSGPEVTTSETKNVSGTLFGNQSKTKEVTTQVTTRVPEYVWTHTLTYSaklvdrkN---RSIVETLLS 171
                 56777777888899*********************************************************66666663331...222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.99
# Mc/sec: 554.31
//
Query:       MMETSP0890-20130614|9103_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   53.0   0.0    3.1e-14   52.5   0.0    1.1  1  PF04061.9 ORMDL family
  ------ inclusion threshold ------
       0.11   11.5   0.0       0.11   11.4   0.0    1.1  1  PF05220.7 MgpC protein precursor


Domain annotation for each model (and alignments):
>> PF04061.9  ORMDL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   4.6e-18   3.1e-14       1      83 [.      42     124 ..      42     125 .. 0.90

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 4.6e-18
   PF04061.9   1 nknaewvnak..gawliyvvlilllklvllaipvlskevaWtltnlvyvlvsyvllHwvkGtPfetedqGaydnltlWEQidege 83 
                 n  +ew++++  ++  iy +l++++   l+   +ls ++a tltnl+  +++++ lHw kG+P  t  qG+yd+lt+WEQ+d g+
  MMETSP0890-20130614|9103_1  42 NVAVEWLTQHrfRLVGIYALLVAVVFGSLKGA-GLSYSLASTLTNLANAILTFLGLHWAKGSPDYT-AQGEYDALTVWEQVDGGR 124
                 56789999995666779999999999999996.******************************877.***************885 PP

>> PF05220.7  MgpC protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.7e-05      0.11      45      98 ..      29      82 ..      11     119 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
   PF05220.7 45 qlgfketsatdsknlkkksltqpaylisgldvvadhlvfaafkagavgydmttd 98
                q+   ++s+t+++n+  + ltq  + + g+ ++   +vf ++k   + y  ++ 
  MMETSP0890-20130614|9103_1 29 QFFVGNESETETRNVAVEWLTQHRFRLVGIYALLVAVVFGSLKGAGLSYSLAST 82
                55566889************************************9999995432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.32s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 529.72
//
Query:       MMETSP0890-20130614|9143_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-20   72.1   0.0    3.8e-20   71.8   0.0    1.0  1  PF08534.5  Redoxin
    4.9e-11   42.2   0.0    5.7e-11   42.0   0.0    1.1  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   5.5e-24   3.8e-20       1     137 [.       2     147 ..       2     156 .. 0.92

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 5.5e-24
                 X--------S-----TT---EEHHH.HTTSEEEEE---------.IIIIIH.HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH....TT.TSEEE------HHHHHT..-EE-----....-EE--EEEEEE---EEEEEE-SSTT CS
   PF08534.5   1 kaGdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcpt.Csaehp.yleklaklakekgvdvvavvaqndafvkeawak....eglkipvlsDesasfakalglrltedasag....irtpryavidedgkvvylevepepg 137
                 k+GdkaPd++  + a  +++v+ s+  +gkkv+lv++pgaf+p+   +++p yl   ++l k+ g+d+v v+ +nd  v+ awak    eg  i +++D++  ++kalg++l+ +  a      r +r+a++ + g+ +++ + + p+
  MMETSP0890-20130614|9143_1   2 KVGDKAPDVEVVT-AFPDTSVKFSElVAGKKVILVGLPGAFTPPdPXKQVPnYLGAQDAL-KAAGIDSVLVYCVNDMAVMGAWAKslnvEGSMISMFADPTSTLTKALGVELSHPGPAKvlgsGRCKRFAMYFDSGVCKAVAISETPD 147
                 69********855.9999**************************7788888******999.****************************9999******************9998777688888************999988888773 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   8.3e-15   5.7e-11       1     103 [.       3     112 ..       3     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 8.3e-15
  PF00578.16   1 vgdkapdfelkdtd.gkkvslsdl.kgkpvvLffypkdfcpvCt.telpalaelyeefkkkgvevigvsv.dspeshkkfaekne...lnfpllsDeegevakaygvlne 103
                 vgdkapd e+ ++   ++v++s+l +gk+v+L+  p++f+p+ + +++p++  + + +k++g++ + v + ++   + ++a++ +     + +++D++++++ka+gv  +
  MMETSP0890-20130614|9143_1   3 VGDKAPDVEVVTAFpDTSVKFSELvAGKKVILVGLPGAFTPPDPxKQVPNYLGAQDALKAAGIDSVLVYCvNDMAVMGAWAKSLNvegSMISMFADPTSTLTKALGVELS 112
                 8**********7751466*************************99******************76666666**************8888899**************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.34s 00:00:00.78 Elapsed: 00:00:00.97
# Mc/sec: 419.98
//
Query:       MMETSP0890-20130614|9183_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 679.62
//
Query:       MMETSP0890-20130614|9200_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 198.56
//
Query:       MMETSP0890-20130614|9213_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.1   0.0       0.03   14.1   0.0    1.1  1  PF08458.5 Plant pleckstrin homology-like region


Domain annotation for each model (and alignments):
>> PF08458.5  Plant pleckstrin homology-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.2e-06      0.03      67     107 ..      17      57 ..       4      60 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-06
   PF08458.5  67 geekvyfgLkTaqgvvefelksqaekqvWvegvkslLrqaa 107
                    k+ f+L Ta ++v++e+k++ + ++     k l++qa+
  MMETSP0890-20130614|9213_1  17 KVAKRAFSLITATRTVDIECKDEDQVKILISTFKYLVAQAK 57 
                 346899*********************99999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 284.01
//
Query:       MMETSP0890-20130614|9242_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   49.9   3.0    1.8e-09   36.9   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
      0.008   14.2   2.9       0.19    9.7   0.2    2.0  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   4.4e-06      0.03      28      39 .]       2      13 ..       1      13 [. 0.97
   2 !   36.9   0.1   2.7e-13   1.8e-09       2      39 .]      18      55 .]      17      55 .] 0.95

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.4e-06
                EEETTSEEEEEE CS
  PF00400.27 28 sgSrDgtirlWd 39
                ++SrD+t ++Wd
  MMETSP0890-20130614|9242_1  2 TASRDRTAKIWD 13
                8**********9 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 2.7e-13
                EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
  PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++ tl+gH s+V + +fs dg +++++S+D+t r+W+
  MMETSP0890-20130614|9242_1 18 RLLLTLSGHRSWVIASDFSRDGARVVTASADRTARVWN 55
                56889********************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2   2.8e-05      0.19     236     258 ..       2      24 ..       1      37 [. 0.78
   2 !    6.0   0.2   0.00038       2.6     232     247 ..      41      55 .]      26      55 .] 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.8e-05
   PF11715.3 236 tlsrDgkLRvWnletgqclrttd 258
                 t srD++ ++W+  tg +l t  
  MMETSP0890-20130614|9242_1   2 TASRDRTAKIWDAVTGRLLLTLS 24 
                 78**************9965544 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00038
   PF11715.3 232 tfvftlsrDgkLRvWn 247
                   v+t s+D++ RvWn
  MMETSP0890-20130614|9242_1  41 R-VVTASADRTARVWN 55 
                 3.56***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 196.72
//
Query:       MMETSP0890-20130614|9258_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 422.22
//
Query:       MMETSP0890-20130614|9253_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 862.07
//
Query:       MMETSP0890-20130614|9279_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 246.79
//
Query:       MMETSP0890-20130614|9375_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    8.3   5.6        1.2    8.3   3.9    1.0  1  PF05308.6 Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.9   8.9e-05       1.2     183     208 ..      19      46 ..       3      55 .. 0.47

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 8.9e-05
   PF05308.6 183 epelevp..pppppPpPlpavslqqsas 208
                  p+++ +  +  ppPpP+p  +++q+  
  MMETSP0890-20130614|9375_1  19 VPVSTDSirKQKPPPPPPPRRPITQPRQ 46 
                 2322222333333333334444544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.61
# Mc/sec: 227.85
//
Query:       MMETSP0890-20130614|9383_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-60  202.2   0.0    3.7e-60  202.0   0.0    1.0  1  PF00025.16 ADP-ribosylation factor family
    3.9e-09   35.5   0.2    9.3e-06   24.4   0.0    2.4  2  PF00503.15 G-protein alpha subunit
    1.2e-07   31.0   0.0    1.6e-07   30.6   0.0    1.1  1  PF09439.5  Signal recognition particle receptor beta subunit
    1.9e-07   31.4   0.0    2.5e-07   31.0   0.0    1.2  1  PF08477.8  Miro-like protein
    3.3e-07   29.7   0.0    4.1e-07   29.4   0.0    1.2  1  PF00071.17 Ras family
    1.6e-06   27.3   0.0    1.8e-06   27.1   0.0    1.1  1  PF04670.7  Gtr1/RagA G protein conserved region
      5e-06   26.3   0.0      7e-06   25.9   0.0    1.2  1  PF01926.18 50S ribosome-binding GTPase
     0.0056   16.0   0.0       0.79    9.0   0.0    2.1  2  PF00009.22 Elongation factor Tu GTP binding domain
     0.0099   15.8   0.0      0.016   15.1   0.0    1.3  1  PF03374.9  Phage antirepressor protein KilAC domain
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.026   13.8   0.0    1.3  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.052   12.8   0.0        3.9    6.7   0.0    2.1  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.0   0.0   2.9e-63   3.7e-60       3     173 ..       9     193 ..       7     195 .] 0.96

  Alignments for each domain:
  == domain 1    score: 202.0 bits;  conditional E-value: 2.9e-63
                 CCHHCC--.TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTT............ST...SSSEEEEEEBTTTTB--HHHHHHHHH CS
  PF00025.16   3 silaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellglee............lk..gkrkleiqkcsavkgeglkeglewlse 173
                 ++la+l l++k+++il+lGLDnaGKtT+l++lk+++++ ++PT+++n +el i n++f+++D+GG+e++R+lWk+Yf+++d+v+++vD+ dr+R+ eak+eL+ ll+ +el++v++lvl+NK+D+++a+se++lr +lgl e            +   + r++e+++cs+++++g+ +g++wls+
  MMETSP0890-20130614|9383_1   9 NVLANLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQIHQPTLHPNQDELIIGNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVDALDRNRFPEAKRELDYLLTCDELASVPFLVLGNKIDAATAASEDDLRYALGLFEtygkdtnryrsdIDsdKIRPIELFMCSVIRKMGYADGFRWLSS 193
                 6899****************************************************************************************************************************************998888888877774455789**********************86 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00026      0.32      57      80 ..      19      42 ..      14      64 .. 0.84
   2 !   24.4   0.0   7.5e-09   9.3e-06     223     331 ..      62     160 ..      41     165 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
                XEEEEEEEXXXXXXXHHHHHHHHH CS
  PF00503.15 57 kevklLlLGqgeSGKsTilkqfkl 80
                k  k+L+LG +  GK+T+l+ +k 
  MMETSP0890-20130614|9383_1 19 KSAKILFLGLDNAGKTTLLHMLKE 42
                678****************98875 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 7.5e-09
                 XXXEEEEEEXXXXGGGGGGTGGGXXXXXEEEEEEEGGGTTXBXSSXTTSBHHHHHHHHHHHHHTXGGGSSXEEEEEEEXHHHHHHHTTTSXG.GSGGGTTXXXX..HHHH CS
  PF00503.15 223 sktefrlvDvGGqrserkkWipcfedvdaiiFlvslsefdqvlyedesvnrleeSlklFksicnnkllkntpiiLflNKlDileeKlkkgpk.lskyfpsyegdrendye 331
                 ++++f+++D+GG+ + r+ W+ +f  vd ++++v         + d   nr+ e+ +  + +++   l+++p++++ NK+D   +  +++ +    +f+ y g+ +n y+
  MMETSP0890-20130614|9383_1  62 GNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVD--------ALD--RNRFPEAKRELDYLLTCDELASVPFLVLGNKIDAATAASEDDLRyALGLFETY-GKDTNRYR 160
                 7899*****************************98........223..37888888888888888888888888888888876666666666666666666.66566665 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.3e-10   1.6e-07       3     137 ..      20     146 ..      18     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.3e-10
                 --EEEEE--TT---HHHHHHHHHSS-------SS-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHHHHHHH CS
   PF09439.5   3 kpavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspklikdaL 137
                 + ++l++Gl ++GKT+l++ L ++ v+  +  ++++  + +    + +++  D+ Ghe  r   +++    +++ g+v++vD+  d  +  e    l  +l+  e    +v++l+  nK + ++a s+  ++ aL
  MMETSP0890-20130614|9383_1  20 SAKILFLGLDNAGKTTLLHMLKENRVQIHQPTLHPNQDELI--IGNIRFKTFDLGGHETARRLWKDY---FTTVDGVVYMVDA-LDRNRFPEAKRELDYLLTCDE--LASVPFLVLGNKIDAATAASEDDLRYAL 146
                 6789**************************99999988888..67889999*******998765555...78899*******6.555556555554555555555..4789**************9998888776 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     2e-10   2.5e-07       1     119 []      22     132 ..      22     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2e-10
   PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                 k++ +G  ++GK++ll+ l +          +i++ tl  +  e+++ +  ++ +dlgg+e + +  ++ ++++d+++ ++d  d++ + e+++ l+ l    +l  ++p  ++gnk+D
  MMETSP0890-20130614|9383_1  22 KILFLGLDNAGKTTLLHMLKENRV-------QIHQPTLHPNQDELIIGNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVDALDRNRFPEAKRELDYLLTCDEL-ASVPFLVLGNKID 132
                 77889999********98774444.......588888887777888888889*************99999*********************98887777777754.56*********99 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.3e-10   4.1e-07       1     118 [.      22     135 ..      22     173 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.3e-10
                 EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHST.TTSSEEEE---TTGGG CS
  PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvDlee 118
                 K++++G  + GKt+ll+   e++  + +++T+    + ++ e+   +++++ +D  G e  ++l + y+++++g++ + d  +r+ f ++k+ ++ + +  e  +vp++++GnK+D ++
  MMETSP0890-20130614|9383_1  22 KILFLGLDNAGKTTLLHMLKENRV-QIHQPTL----HPNQDELIIGNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVDALDRNRFPEAKRELDYLLTCDElASVPFLVLGNKIDAAT 135
                 899*************99988885.5679***....3334444456899******************************************99999998888888***********876 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.4e-09   1.8e-06       1     128 [.      22     138 ..      22     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.4e-09
   PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakv..fvlihKmDlisede 128
                 k+L++G  ++GKt++  ++ +n ++ +    + T + +q+++ + gn+ +++ D+gG e+          ++ f +v+ ++y++D+   + ++ + + ++ l +ll++++ a+v   vl +K+D  +   
  MMETSP0890-20130614|9383_1  22 KILFLGLDNAGKTTLLHMLKENRVQIH----QPTLHPNQDEL-IIGNIRFKTFDLGGHETARRL-----WKDYFTTVDGVVYMVDAL--D-RNRFPEAKRELDYLLTCDELASVpfLVLGNKIDAATAAS 138
                 89************6666555555554....88999999999.79************9655544.....6899*************9..4.566777777777777777766651145557777766444 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.7e-09     7e-06       1     114 []      22     130 ..      22     130 .. 0.64

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 5.7e-09
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETTEEEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEE.TTS...HHHHHHHHHHHHH....H.TCCCEEEEEEC CS
  PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkkekiilvDtPGiiegasedkeiegikkylekv.eradvlllvvd.asa...vlkeadkellnel....e.akkplilvlnk 114
                 ++ ++G+ N+GK+tL+  L ++++++ + + +  +d  ++++    ++   D+ G           e  ++ ++    ++d+++++vd +++   +  ea++el ++l    e a +p++++ nk
  MMETSP0890-20130614|9383_1  22 KILFLGLDNAGKTTLLHMLKENRVQIHQPTLHPNQDElIIGN---IRFKTFDLGGH----------ETARRLWKDYfTTVDGVVYMVDaLDRnrfP--EAKREL-DYLltcdElASVPFLVLGNK 130
                 5899***************97767555555555555533333...2489******2..........24456788888999********55555332..233444.44433321367777776665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0084        10       5      34 ..      22      51 ..      18      63 .. 0.79
   2 !    9.0   0.0   0.00064      0.79      74     147 ..      68     146 ..      62     186 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0084
                EEEEEESTT---HHHHHHHHHHCCCCEHHH CS
  PF00009.22  5 nigiighvDhGKtTltdallykagaiskrg 34
                 i ++g  ++GKtTl+  l  +  +i++ +
  MMETSP0890-20130614|9383_1 22 KILFLGLDNAGKTTLLHMLKENRVQIHQPT 51
                677788889********9999888888755 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00064
                 EEE----GGGHHHHHHHHHT-SEEEEEEETTS-.....S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHH CS
  PF00009.22  74 liDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqTeevlrlakklgvkiivviNKiDrveaeleeiveelk 147
                   D  GH+   +       ++Dg+v +vda +       +     +l   +   v+++v+ NKiD + a  e   + + 
  MMETSP0890-20130614|9383_1  68 TFDLGGHETARRLWKDYFTTVDGVVYMVDALDRnrfpeAKRELDYLLTCDELASVPFLVLGNKIDAATAASEDDLRYAL 146
                 567777777777777778899*********98877643444444445555567889**********9666655555444 PP

>> PF03374.9  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.3e-05     0.016      29     106 ..      19      99 ..      11     103 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.3e-05
   PF03374.9  29 dlAkll.....gigenrlfklLrengilykrgsgrnlpyqkaiekGyfevkegvitrsdgeekikkttkvTpKGqkwlveklk 106
                 + Ak+l     + g+++l ++L+en+++++  +  ++p q+ +  G ++ k+++   ++   +++k+   T  G  ++v+ l 
  MMETSP0890-20130614|9383_1  19 KSAKILflgldNAGKTTLLHMLKENRVQIH--QPTLHPNQDELIIGNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVDALD 99 
                 569999999999*****************9..8**************************999999999999999999998875 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.026       2      29 ..      21      48 ..      20      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
   PF10662.4  2 kkilliGkvgaGKTtLtqalkgeelkyk 29
                 kil++G  +aGKTtL   lk+++++ +
  MMETSP0890-20130614|9383_1 21 AKILFLGLDNAGKTTLLHMLKENRVQIH 48
                69********************998766 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.02        25      11      24 ..      31      43 ..      22      52 .. 0.73
   2 ?    6.7   0.0    0.0032       3.9     112     158 ..      86     139 ..      69     147 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.02
                ---HHHHHHHHCHS CS
  PF02492.14 11 sGKTtLlekllekn 24
                +GKTtLl  l  +n
  MMETSP0890-20130614|9383_1 31 AGKTTLLHMLK-EN 43
                9******8776.33 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0032
                 EEE-EEEEEEETTTH.....CHHHHHHHHHHHHHCT-S.EEEEE-CCCTTTT.. CS
  PF02492.14 112 lgldavvtvvdvknl.....tegedkpekledqlaaAd.livlnKiDlldae.a 158
                 +++d+vv++vd+        ++ e    +  d la    l++ nKiD ++a+ +
  MMETSP0890-20130614|9383_1  86 TTVDGVVYMVDALDRnrfpeAKRELDYLLTCDELASVPfLVLGNKIDAATAAsE 139
                 6899*******94448889744555555555666555515666*****999844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 576.90
//
Query:       MMETSP0890-20130614|9411_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        67  (0.00490053); expected 273.4 (0.02)
Passed bias filter:                       63  (0.00460796); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.41s 00:00:00.67 Elapsed: 00:00:00.59
# Mc/sec: 121.85
//
Query:       MMETSP0890-20130614|9428_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 512.32
//
Query:       MMETSP0890-20130614|9430_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-05   23.8   4.1    4.8e-05   23.4   2.8    1.1  1  PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
     0.0008   19.1   6.9     0.0011   18.6   4.8    1.2  1  PF06747.8  CHCH domain
     0.0072   16.2   1.2       0.01   15.7   0.9    1.2  1  PF05051.8  Cytochrome C oxidase copper chaperone (COX17)
     0.0076   16.1   0.1      0.011   15.6   0.1    1.3  1  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
  ------ inclusion threshold ------
      0.047   13.6   0.0      0.077   12.9   0.0    1.3  1  PF06897.7  Protein of unknown function (DUF1269)
       0.29    9.6   2.8       0.31    9.5   2.0    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
          1    8.5   6.9        1.1    8.3   4.8    1.2  1  PF04652.11 Vta1 like
        1.6    7.8   6.4        2.3    7.2   4.4    1.3  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal
        5.1    5.0   9.5        5.4    5.0   6.6    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   2.8   3.2e-08   4.8e-05      90     206 ..      22     153 ..      15     169 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 3.2e-08
   PF09849.4  90 fGgsqkrpaasqpsvqpsap...rsawgsgeasqqaaaqqpgyaqp.....ap.gsFLggalqt.AAGVa..GGm.....lLanglenlfgghsqpeeiveaikesspwggagdasasalaedagennfgddds 206
                  Gg +++pa+s+p+++p++    +++ +++ ++ q + q  +   p     ++ g+ ++g + t A G+a  +G+      ++ ++ ++fgg + pee+  +  e++p ++a ++ +sal +  ++n+ ++  +
  MMETSP0890-20130614|9430_1  22 SGGRRSAPARSAPRQAPRQVvrtPPPPARQPPPPQPTPQ-HQSPPPamaprQQsGGMMSGLMGTmAQGMAfgAGSsvahhAVGAAMNSMFGGRK-PEEVTPQVVEKTPVASACEQDKSALYQCITSNDAEKCAD 153
                 588889999999999888889964444444444444443.2222223433433656665555432556652222222222588899****9987.777777777778888888888888888888877766554 PP

>> PF06747.8  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   4.8   7.4e-07    0.0011       1      35 []     132     164 ..     132     164 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 7.4e-07
                 ---HHHHHHHHHHHH-SS--TTHHHHHHHHHHHCC CS
   PF06747.8   1 CgeEfkellsClkensdefskCrkefeafreCvkk 35 
                 C +  ++l++C+ +n++  +kC ++f+a+++C+++
  MMETSP0890-20130614|9430_1 132 CEQDKSALYQCITSNDA--EKCADYFQALQSCQEN 164
                 99**************6..*************985 PP

>> PF05051.8  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.9   6.8e-06      0.01      11      45 ..     131     165 ..     124     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.8e-06
                 TSHHHHHHHHHHHHH----SCHHHHHHHHHHH--- CS
   PF05051.8  11 aCpeekkaRDeCilekgeeeCkklieaykaClrge 45 
                 aC ++k+a  +Ci  + +e+C+++ +a ++C  + 
  MMETSP0890-20130614|9430_1 131 ACEQDKSALYQCITSNDAEKCADYFQALQSCQENA 165
                 9******************************7665 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.6e-06     0.011      33     123 ..       5      92 ..       3     110 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.6e-06
   PF04695.8  33 KGLteeEIdealkragnseatsstaateaaqstsesstpsdnysnqsssssststpqsqqsyyqqppplv.perdwrdll..imataaaglgyg 123
                 K L   EI++ l+r+ +s          +a + s +++   ++ + ++++  ++ p ++  + q+ppp + p+++   ++  +m t+a g+++g
  MMETSP0890-20130614|9430_1   5 KDLFVVEIKKKLERMPRSGG------RRSAPARSAPRQAPRQVVRTPPPPARQPPPPQPTPQHQSPPPAMaPRQQSGGMMsgLMGTMAQGMAFG 92 
                 888889*********99993......33333333333333444444444444444444444555566666566644444311344444455554 PP

>> PF06897.7  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.1e-05     0.077       3      78 ..      74     158 ..      72     162 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.1e-05
   PF06897.7   3 sGalwGlLvGllflnpllGv.......avGAaagAlsgslsdvgidddflke..lgetlkpgssAlfvlvrkatpdkvleelksl 78 
                 sG++++ L+G++     +G+       avGAa+  + g  +  ++  + +++  ++++ ++++sAl   + +++++k ++ ++ l
  MMETSP0890-20130614|9430_1  74 SGGMMSGLMGTMAQGMAFGAgssvahhAVGAAMNSMFGGRKPEEVTPQVVEKtpVASACEQDKSALYQCITSNDAEKCADYFQAL 158
                 899*********999999999999999**************999999999865589*********************99887765 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.0    0.0002      0.31     260     333 ..      15      76 ..       2     139 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0002
   PF10446.4 260 kledldsergrr.skkkkspatSpkrlrsppprkargrspkrllrsppppkrlrsp...pparaskspvaspltgeeg 333
                 kle +    grr    ++ p+++p++++                 +pppp r   p   +p++ s  p+++p +++ g
  MMETSP0890-20130614|9430_1  15 KLERMPRSGGRRsAPARSAPRQAPRQVVR----------------TPPPPARQPPPpqpTPQHQSPPPAMAPRQQSGG 76 
                 45555544444445555566666666554................444443333333222222222222222222211 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.8   0.00074       1.1     291     345 ..      32      79 ..      12     169 .. 0.44

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00074
                 ........................XXXXXXXXXXXHHHHHH.........HHHHH CS
  PF04652.11 291 psteapssppvqapsapakpslssakPtaqsassaqaqplqsvapqiaageitld 345
                 +++ + + + v +p++pa++ ++ ++Pt+q++s ++a+++ ++      ++ + +
  MMETSP0890-20130614|9430_1  32 SAPRQAPRQVVRTPPPPARQ-PPPPQPTPQHQSPPPAMAPRQQ------SGGMMS 79 
                 11111122222222222222.3333333333333333322221......122222 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.4    0.0015       2.3     219     275 ..      31      91 ..      20     109 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0015
                 SC--XXXXXXXXXXXXXXXXXXXX........XXX.X...XX...XXXXXXXXXXXXXXXX CS
  PF01213.14 219 ksalaavsasktaaPppPpppppPsvdtikdsves.a...ksdskgslgavFaelnkGeei 275
                  sa  +   +   +PppP+  ppP+++t +++ ++ a   +++s g ++ + + + +G + 
  MMETSP0890-20130614|9430_1  31 RSAPRQAPRQVVRTPPPPARQPPPPQPTPQHQSPPpAmapRQQSGGMMSGLMGTMAQGMAF 91 
                 4444444445555677776666665555444433212111333677789999999999765 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.6    0.0035       5.4     231     288 ..      31      86 ..       9     164 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0035
   PF09770.4 231 aplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplq..qlsas 288
                 +++p+q+p q++       p++++q+pp++++p++q++ ++++ +q+++  +   + ++ 
  MMETSP0890-20130614|9430_1  31 RSAPRQAPRQVVRTP----PPPARQPPPPQPTPQHQSPPPAMAPRQQSGGMMSglMGTMA 86 
                 222444444444444....44444555555555555554444444444433333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.94
# Mc/sec: 433.38
//
Query:       MMETSP0890-20130614|9459_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   46.4   0.0    2.6e-12   46.4   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    9.2e-08   31.6   0.0      1e-07   31.4   0.0    1.1  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   3.8e-16   2.6e-12      15      58 ..       2      45 ..       1      51 [] 0.77

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 3.8e-16
   PF13306.1 15 tsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncs 58
                t++t+p  +t+Ige+aF+nc+sl+++tlp+s++ i++ aF++c 
  MMETSP0890-20130614|9459_1  2 THLTLPVGLTTIGERAFENCTSLTHLTLPDSISDIDSDAFDGCP 45
                56788888888888888888888888888888888888888884 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.5e-11     1e-07      13      50 ..      10      46 ..       2      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.5e-11
   PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50
                l++i+++aF+++++L++L L  ++++ i+++af+g+p+
  MMETSP0890-20130614|9459_1 10 LTTIGERAFENCTSLTHLTLP-DSISDIDSDAFDGCPN 46
                99*******************.**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        98  (0.00716793); expected 273.4 (0.02)
Passed bias filter:                       94  (0.00687537); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.39s 00:00:00.66 Elapsed: 00:00:00.77
# Mc/sec: 158.72
//
Query:       MMETSP0890-20130614|9462_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   59.9   0.3    2.5e-16   58.7   0.1    1.7  2  PF03946.9  Ribosomal protein L11, N-terminal domain
    4.6e-15   55.4   0.6    6.4e-15   54.9   0.1    1.5  2  PF00298.14 Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> PF03946.9  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   3.6e-20   2.5e-16       3      59 ..      14      69 ..      12      70 .. 0.94
   2 ?   -2.9   0.0      0.63   4.3e+03      31      43 ..      81      93 ..      80      97 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 3.6e-20
                EEEE------STTT-----------SHHHHHHHHCCTT-.-----EEEEEEE-STT- CS
   PF03946.9  3 klqveaGkAnpaPplGpaLGplGvnimefckefnaaTkdykkGlpvpVkItvyndks 59
                 ++  +G++ +a++l+p++GplG++++++++++ +aT d+k G+ v+Vk+t+ n+++
  MMETSP0890-20130614|9462_1 14 VMRAVGGEVGAASSLAPKIGPLGLSPKKVGEDIQKATMDWK-GMNVTVKLTIINRQA 69
                56789************************************.************987 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.63
                HHHHHHCCTT-.- CS
   PF03946.9 31 fckefnaaTkdyk 43
                ++k+ n+a +d k
  MMETSP0890-20130614|9462_1 81 VVKALNEAPRDRK 93
                7899999877765 PP

>> PF00298.14  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2   8.4e+03       8      27 ..      13      32 ..      11      43 .. 0.64
   2 !   54.9   0.1   9.4e-19   6.4e-15       3      69 .]      75     143 ..      73     143 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.2
                HHHHC--------------- CS
  PF00298.14  8 lLkkaagiekGsgkpgkekv 27
                 +++a+g e G++ +   k+
  MMETSP0890-20130614|9462_1 13 VVMRAVGGEVGAASSLAPKI 32
                56667777777666554444 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 9.4e-19
                 --TTTHHHHC----.----------.---EETTHHHHHHHHCTTTSS-SSSTTHHHTT---TTT----E CS
  PF00298.14   3 PpasvlLkkaagie.kGsgkpgkek.vGkitlkqvyeIAkiKksdlnaldleaavksiiGtArsmGikV 69 
                 P+as l+ ka++ + + ++k ++ k  G+itl+qv eIA++ ++ ++a++l +++k+i+GtA+s+G++V
  MMETSP0890-20130614|9462_1  75 PTASTLVVKALNEApRDRKKVKNIKhDGNITLDQVIEIARTMRPRSMAKELSGTCKEILGTAHSVGCTV 143
                 9**********9964777788888899****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 564.86
//
Query:       MMETSP0890-20130614|9528_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-12   45.0   0.0    1.1e-11   44.7   0.0    1.1  1  PF10722.4 Putative bacterial sensory transduction regulator


Domain annotation for each model (and alignments):
>> PF10722.4  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   7.9e-16   1.1e-11       4     126 ..      16     141 ..      14     142 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 7.9e-16
   PF10722.4   4 rleelleeagyeaevaedddgd.vqlegawggvrftiafggegeelllvlafvvrvpdedreellellnewNrelrfgkayl.dedgdvvlemdvdl.aggvtpdqldrllelaleaveqffealq 126
                 ++  +l+++ +++e   d ++  ++++g++  + +++++ ++ ++++l+la + +vp+ +r+e++e l +  + l +g +    +dg+ ++  + d+ +g ++ + ++++++++l +++++f+ l 
  MMETSP0890-20130614|9528_1  16 TIISWLKSENWSYEIIPDKQAIrTGVQGRNSAYKVFFRVQEDKQQIHLFLAVEQKVPENKRDEAAEYLMRATWGLQIGNFEFdYSDGEFRYKVAYDVeNGRFSTRMVKNMVGISLGTFDRYFPGLM 141
                 5789**************88888***********************************************************88999999********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.46s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 634.11
//
Query:       MMETSP0890-20130614|9529_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-36  121.8   3.6    1.3e-35  121.1   0.2    2.6  4  PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
    5.5e-32  109.1   3.2    9.3e-32  108.4   0.5    2.5  3  PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
    0.00069   18.5   0.1     0.0017   17.2   0.0    1.6  1  PF00108.18 Thiolase, N-terminal domain
     0.0011   18.0   0.0     0.0017   17.4   0.0    1.3  1  PF08392.7  FAE1/Type III polyketide synthase-like protein
     0.0098   15.2   3.6      0.056   12.8   0.2    2.8  3  PF00109.21 Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
       0.17   10.9   0.8       0.76    8.8   0.6    2.0  1  PF00195.14 Chalcone and stilbene synthases, N-terminal domain


Domain annotation for each model (and alignments):
>> PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   3.7e+03       3      16 ..      91     104 ..      89     108 .. 0.83
   2 ?    0.2   0.0       0.3   6.9e+02      34      59 ..     108     133 ..     104     137 .. 0.87
   3 ?   -3.9   0.0       5.6   1.3e+04      70      81 ..     177     188 ..     172     190 .. 0.79
   4 !  121.1   0.2   5.5e-39   1.3e-35       1      90 []     269     358 ..     269     358 .. 0.99

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
                 C--------SEEEE CS
   PF08541.5   3 kagltpedidwfvp 16 
                  a+++p d+d+++ 
  MMETSP0890-20130614|9529_1  91 SADVNPTDVDLVIV 104
                 68999*****9986 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.3
                 -TTEE--GGGT----TTHHHHHHHHH CS
   PF08541.5  34 peekvvvnldeyGntsaasiplaLde 59 
                 ++e ++ +  +++n+ +as  +a+d 
  MMETSP0890-20130614|9529_1 108 SPEDMFGDATKVANLIGASKAVAFDL 133
                 5788999999**********999985 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 5.6
                 --EEEE------ CS
   PF08541.5  70 dlvllvgfGaGl 81 
                  +++l+g GaG 
  MMETSP0890-20130614|9529_1 177 STCVLFGDGAGA 188
                 678999999996 PP

  == domain 4    score: 121.1 bits;  conditional E-value: 5.5e-39
                 HHC--------SEEEE--S-HHHHHHHHHH----TTEE--GGGT----TTHHHHHHHHHHHC---------EEEE-----------EE-- CS
   PF08541.5   1 LekagltpedidwfvphqanlriidavakrlglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGlswgaavlrw 90 
                 Le a+l+++ idw+++hqan+rii+ va+rlg++++k++ nlde+Gntsa sip+aLd+av++g +++g+ ++++gfGaGlswgaa++rw
  MMETSP0890-20130614|9529_1 269 LEYAELSTDNIDWLLLHQANIRIIETVADRLGISRSKIISNLDEHGNTSAGSIPIALDHAVKSGLIQNGHIIAMAGFGAGLSWGAAIIRW 358
                 68899************************************************************************************9 PP

>> PF08545.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.35   7.9e+02      25      42 ..      65      82 ..      49      94 .. 0.76
   2 !  108.4   0.5   4.1e-35   9.3e-32       1      80 []     131     208 ..     131     208 .. 0.97
   3 ?   -3.7   0.0       3.7   8.5e+03       7      22 ..     342     357 ..     341     358 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.35
                ----EEEEE---GGGGS- CS
   PF08545.5 25 aaknvLvvgaetlsrild 42
                  ++ L++++e+ls+++ 
  MMETSP0890-20130614|9529_1 65 IRSRKLLCSGEKLSEFAA 82
                55678999****999654 PP

  == domain 2    score: 108.4 bits;  conditional E-value: 4.1e-35
                 -EEE-TT---HHHHHHHHHHHH------EEEEE---GGGGS-TT-TTTTTT-------EEE--BS---..---------- CS
   PF08545.5   1 fDvnaaCsgfvyalsvAaaliesgaaknvLvvgaetlsrildwkdrstavlfGDGAgAvvleaseeegaeilssalgsdg 80 
                 fD++aaCsgf++al +A++++e+g++++++vvga++lsr++dw+drst+vlfGDGAgAvvl++++++g  ils+al+s+g
  MMETSP0890-20130614|9529_1 131 FDLTAACSGFLFALITASQFLETGTYETAVVVGADALSRWVDWSDRSTCVLFGDGAGAVVLKKKNKGG--ILSFALKSNG 208
                 9**************************************************************87777..*******997 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.7
                 T---HHHHHHHHHHHH CS
   PF08545.5   7 CsgfvyalsvAaalie 22 
                  +gf ++ls  aa+i+
  MMETSP0890-20130614|9529_1 342 MAGFGAGLSWGAAIIR 357
                 5899999999988886 PP

>> PF00108.18  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.4e-07    0.0017      10     121 ..      61     170 ..      59     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.4e-07
                 -EE---------TTS-HHHHHHHHHHHHHHH-TCHHHCEEEEEE---S-STT.--HHHHHHHHHSSS-TTSEEEEEE-GGG-HHHHHHHHHHHHH----SEEEE-----CCCH CS
  PF00108.18  10 aRtpigsfkgslkdlsaedLgaavlkallekakvkaeevdevilGnVlqage.gqnpaRqaalkaglpeevpaltvnkvCgSglkavalaaqkiaageadivvagGvEsmsna 121
                 +Rt i s k   +  + ++ +a++ +++l  a+v++ +vd vi+ +   +   g   a ++a + g + +++a+ ++ +C+  l a+++a q + +g+++  v+ G++ +s+ 
  MMETSP0890-20130614|9529_1  61 QRTGIRSRKLLCSGEKLSEFAAEAASQALLSADVNPTDVDLVIVATSSPEDMfG--DATKVANLIGAS-KAVAFDLTAACSGFLFALITASQFLETGTYETAVVVGADALSRW 170
                 5888888888888899999************************99988866534..344455555555.566789*********************************99975 PP

>> PF08392.7  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.3e-07    0.0017      85     208 ..      79     196 ..      63     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 7.3e-07
   PF08392.7  85 evlfgavdellaktkvkpkdigilvvncslfsptPslsamvvnryklredvksynLsGmGCsaglisidlakdllqvhkntlalvvstEnitlnwYvGnersmllsnclFRvGgaavllsnksa 208
                 e+  +a  + l  ++v+p+d+++++v++s        +  v n  +  + v +++L++  Cs  l ++  a ++l++ + ++a+vv +++++  w   ++rs     +lF  G+ av+l +k++
  MMETSP0890-20130614|9529_1  79 EFAAEAASQALLSADVNPTDVDLVIVATSSPEDMFGDATKVANLIGASKAV-AFDLTA-ACSGFLFALITASQFLETGTYETAVVVGADALSR-WVDWSDRSTC---VLFGDGAGAVVLKKKNK 196
                 56667777888899**************98877777788899988877665.79**98.8******************************985.6667888866...48999999999987765 PP

>> PF00109.21  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.49   1.1e+03      89     110 ..      78      99 ..      49     116 .. 0.78
   2 !   12.8   0.2   2.5e-05     0.056     168     212 ..     128     172 ..     115     182 .. 0.83
   3 ?    2.1   0.0     0.045     1e+02     239     252 ..     181     194 ..     174     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHH----.... CS
  PF00109.21  89 qrlaleaawealedagldpesl 110
                   +a eaa +al  a ++p+++
  MMETSP0890-20130614|9529_1  78 SEFAAEAASQALLSADVNPTDV 99 
                 5678899999999999999764 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.5e-05
                 ---BEEE-GGGHHHHHHHHH.HHHH----SEEEE--------HHH CS
  PF00109.21 168 GpsvtvdtacsSslvalhaavqslregeadlalaGGvelllspet 212
                  +++ +++acs+ l al  a q l +g+ ++a++ G+++l+ +  
  MMETSP0890-20130614|9529_1 128 AVAFDLTAACSGFLFALITASQFLETGTYETAVVVGADALSRWVD 172
                 566678999999999999999*****************9877655 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.045
                 -----.--EEEEEE CS
  PF00109.21 239 vlGEGvGavllkrl 252
                  +G+G+Gav+lk++
  MMETSP0890-20130614|9529_1 181 LFGDGAGAVVLKKK 194
                 58**********97 PP

>> PF00195.14  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.6   0.00033      0.76      90     223 ..      65     191 ..      50     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00033
                 HHHHHHHHH.--------HHHHHHHHH----GGG--EEEEE-----EE---HHHHHHH----TT-EEEEE----------HHHHHHHHHHH-----EEEEE---GGGG-----TTSHHHHCHHHH-----EEEEE CS
  PF00195.14  90 ldarqdivv.aevpklgkeaaekaikeWgqpkskithlvfvttsgvdlpGaDyqltklLGLspsvkrvmlyqqGCfaGgtvLrlakdlaennkgarvLvvcseitvvtfrgPseerldslvgqaLfgDGaaaviv 223
                 +++r+ ++  +++ ++++eaa++a+        ++  ++  t+s  d+ G   ++++l+G s+ v         C +   +L +a ++ e       +vv ++     +   s++      +  LfgDGa av++
  MMETSP0890-20130614|9529_1  65 IRSRKLLCSgEKLSEFAAEAASQALLSADVNPTDVDLVIVATSSPEDMFGDATKVANLIGASKAVAFD--LTAACSGFLFALITASQFLETGTYETAVVVGADALS-RWVDWSDR-----STCVLFGDGAGAVVL 191
                 5566655542457899***********999999**999999*******************99998643..467899999999999999998888888888777543.33333333.....345689999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:01.00
# Mc/sec: 867.48
//
Query:       MMETSP0890-20130614|9545_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-23   82.9   0.2    2.4e-23   81.9   0.1    1.5  1  PF00134.18 Cyclin, N-terminal domain
    4.1e-08   33.0   0.7    2.6e-06   27.2   0.1    2.7  3  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   3.5e-27   2.4e-23      10     126 ..      62     180 ..      54     181 .. 0.92

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 3.5e-27
                 HCCTT-SSTTTCGCS..S--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT-- CS
  PF00134.18  10 eekkkppskyldqqe..elnpemrsilidwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdl 126
                 e  ++ +s+y+++ +   ++ e r+ +i w  ++++ ++l+  t++ a+n+ldRfls +s+   +++l ++++L+lAaK+ee +p  l+++++++++++++ +i  mE+++L+ L++ l
  MMETSP0890-20130614|9545_1  62 ESDYSLDSNYIQNVQiqGMTAEWRNKIICWYNQLQNSYDLDAITIFSAINFLDRFLSLKSCDSLNFRLAAIGALFLAAKLEEKEPIFLHHFCVLSEHVFQPCDIRLMELELLKSLKWHL 180
                 555566778888555558999************************************************************************************************98 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29     2e+03       3      17 ..     109     123 ..     107     130 .. 0.76
   2 ?    3.1   0.0     0.011        79      44      84 ..     129     166 ..     112     176 .. 0.78
   3 !   27.2   0.1   3.8e-10   2.6e-06       1      63 [.     183     257 ..     183     296 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHSSS. CS
  PF02984.14   3 plsFlrrfskaadad 17 
                 +++Fl+rf+ ++ +d
  MMETSP0890-20130614|9545_1 109 AINFLDRFLSLKSCD 123
                 579*****8876654 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHCCHHH.....S.HHHHHH----CCCCHHHHHH CS
  PF02984.14  44 liAaaavllarktlkkkeswtetlkhltgyskddlkecvel 84 
                 l A +a++la k+   +e+ +  l+h+   s++ +++c  +
  MMETSP0890-20130614|9545_1 129 LAAIGALFLAAKL---EEKEPIFLHHFCVLSEHVFQPCDIR 166
                 67999*******9...36889999*************9444 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 3.8e-10
                 --HHHHHHH.......H.HHHSSS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH..........S CS
  PF02984.14   1 ptplsFlrr.......f.skaadadsevrtlakyllelslldykflsyppSliAaaavllarktlk..kke...sw 63 
                 ptpl F +        f    ++++  +  lak ll  +l dy+fl+++pS+ A +a+ +++k+ +  + +    w
  MMETSP0890-20130614|9545_1 183 PTPLAFADLlaglfpsFlAHYEQNTHIILDLAKRLLNDTLHDYDFLKFSPSMRAVTAITCVMKEYRvpS-NqvlRW 257
                 78888888855553332233355566799**********************************976431.124455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:01.33
# Mc/sec: 740.53
//
Query:       MMETSP0890-20130614|9565_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       124  (0.00906963); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.69
# Mc/sec: 197.96
//
Query:       MMETSP0890-20130614|9624_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-31  108.1   0.1    1.6e-31  107.9   0.0    1.1  1  PF00338.17 Ribosomal protein S10p/S20e
  ------ inclusion threshold ------
      0.034   14.3   0.0       0.46   10.7   0.0    2.1  2  PF13291.1  ACT domain
       0.11   12.4   0.0       0.18   11.7   0.0    1.3  1  PF09082.5  Domain of unknown function (DUF1922)


Domain annotation for each model (and alignments):
>> PF00338.17  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   3.5e-35   1.6e-31       1      95 [.      27     121 ..      27     123 .. 0.99

  Alignments for each domain:
  == domain 1    score: 107.9 bits;  conditional E-value: 3.5e-35
                 EEEEEEES-HHHHHHHHHHHHHHHHTST-EEE-EEE-S-EEEEEEEE-S--S-.SSSEEEEEEEEEEEEEEESCE-HHHHHHHCHS------EEEE CS
  PF00338.17   1 iriklkSydhkllekavkqiieaakrlglkvsgpiplPtkrkrvtvlrsphvd.kksreqfeirthkrlidipnatpktvdallkirlpegVevei 95 
                 iri+l+S + k le ++++++++a +++lkvsgp++lPtk++r+t+++sp+++ ++++++fe+r+hkr++d+ ++ +++v+++++i++ +gV+ve+
  MMETSP0890-20130614|9624_1  27 IRITLTSRNVKDLETVCANLKRGALEKDLKVSGPVRLPTKKLRITTRKSPCGEgTNTWDRFEMRIHKRVLDL-HSPSEVVKQITSIPIEPGVDVEV 121
                 8***********************************************************************.*********************98 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0001      0.46      45      71 ..      22      48 ..       9      49 .. 0.87
   2 ?    1.3   0.0     0.088     4e+02      45      73 ..      84     112 ..      78     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0001
   PF13291.1 45 dglaeikltleVkdlehLerviakLrk 71
                d + +i++tl+ +++++Le+v+a+L++
  MMETSP0890-20130614|9624_1 22 DVVHRIRITLTSRNVKDLETVCANLKR 48
                66789********************96 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.088
   PF13291.1  45 dglaeikltleVkdlehLerviakLrkip 73 
                 +  +e++++  V dl   ++v++++ +ip
  MMETSP0890-20130614|9624_1  84 WDRFEMRIHKRVLDLHSPSEVVKQITSIP 112
                 56899999999*9*999999999999986 PP

>> PF09082.5  Domain of unknown function (DUF1922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     4e-05      0.18      18      53 ..      70     108 ..      62     111 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4e-05
   PF09082.5  18 aktrkCvCGktvnvkkr...rilkkaesseeaselvqkl 53 
                 + trk  CG   n  +r   ri k++ + +  se+v+++
  MMETSP0890-20130614|9624_1  70 ITTRKSPCGEGTNTWDRfemRIHKRVLDLHSPSEVVKQI 108
                 68********9999998888*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 482.96
//
Query:       MMETSP0890-20130614|9629_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-13   49.0   6.2    2.6e-13   49.0   4.3    1.5  1  PF01165.15 Ribosomal protein S21


Domain annotation for each model (and alignments):
>> PF01165.15  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   4.3   1.9e-17   2.6e-13       1      55 [.      47     101 ..      47     103 .. 0.96

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.9e-17
  PF01165.15   1 veVkvkenenierALrrfkrkvekagilrelrkrrfyekpsekRkrkrkearrrr 55 
                 +++++k+ e ++ A+ r++r+v k+g+lr lr +rf+e p ek+krk +earr+ 
  MMETSP0890-20130614|9629_1  47 IKINLKPTEAVDGAIMRLRREVNKSGHLRVLRTKRFFEDPREKKKRKLAEARRKM 101
                 6899*************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 402.87
//
Query:       MMETSP0890-20130614|9661_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 299.54
//
Query:       MMETSP0890-20130614|9664_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   17.0   0.0     0.0051   16.7   0.0    1.1  1  PF11022.3 Protein of unknown function (DUF2611)


Domain annotation for each model (and alignments):
>> PF11022.3  Protein of unknown function (DUF2611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.7e-07    0.0051       5      52 ..      33      84 ..      31     105 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.7e-07
   PF11022.3  5 YkifGkqVqsHvLAlgtLgslfg.gvalatggskkkkkatppinassk....D 52
                Y i Gkq+   +  lg +g     g++l  gg+kkk+  +p ++ +s+    +
  MMETSP0890-20130614|9664_1 33 YVIGGKQFSTPQVVLGIMGFYTClGIFLTSGGKKKKED-KPAVSVTSSssssE 84
                9999**************97555277777777766554.33333332222432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.92
# Mc/sec: 291.73
//
Query:       MMETSP0890-20130614|9688_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 335.49
//
Query:       MMETSP0890-20130614|9750_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 543.79
//
Query:       MMETSP0890-20130614|9755_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.4  20.8      0.031   13.7   2.7    3.8  3  PF02809.15 Ubiquitin interaction motif
     0.0056   16.3   0.7     0.0091   15.7   0.5    1.2  1  PF04486.7  SchA/CurD like domain


Domain annotation for each model (and alignments):
>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   1.7     2e-05      0.14       2      16 ..      30      44 ..      30      44 .. 0.93
   2 !   13.7   2.7   4.5e-06     0.031       2      17 ..      56      71 ..      55      72 .. 0.95
   3 ?    1.3   0.4     0.044     3e+02       6      13 ..      77      84 ..      72      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2e-05
                CCHHHHHHHHHHHHH CS
  PF02809.15  2 sEEedLqlALalSle 16
                +EE++L +A+a Sl+
  MMETSP0890-20130614|9755_1 30 QEEDELSRAIAASLA 44
                6************95 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4.5e-06
                CCHHHHHHHHHHHHHH CS
  PF02809.15  2 sEEedLqlALalSlee 17
                +++e L lALalSl+e
  MMETSP0890-20130614|9755_1 56 DDDESLSLALALSLQE 71
                89*************9 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.044
                HHHHHHHH CS
  PF02809.15  6 dLqlALal 13
                 L+lAL+l
  MMETSP0890-20130614|9755_1 77 SLALALQL 84
                59999997 PP

>> PF04486.7  SchA/CurD like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   1.3e-06    0.0091      10     109 ..       6     109 ..       3     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-06
   PF04486.7  10 vkpGseeevaella....sreseaaagdpagrllrttlFlrddvvVRvveveGdlaavlrhvaeqpevreveealapyLeeprdladlesllaafkraalgave 109
                 + +Gs +++ e++a    +++s   ++d+ +r ++++l l +d+  R  + + +    +  ++ q+  ++   ala+ Lee+ + a +e+l+ a +raa   +e
  MMETSP0890-20130614|9755_1   6 ISSGSTARLSEIMAeeeaAQKSSCQEEDELSRAIAASLALDEDTTARSNQDDDESLSLALALSLQEDENDSSLALALQLEEQVKGARVEALRSAERRAASARHE 109
                 6789**********7665555566678999************************99**************************************7777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.72
# Mc/sec: 762.17
//
Query:       MMETSP0890-20130614|9777_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-20   71.4   0.7    9.4e-20   70.6   0.5    1.4  1  PF13365.1  Trypsin-like peptidase domain
    6.5e-15   55.1   0.1      1e-14   54.5   0.1    1.2  1  PF00089.21 Trypsin
    5.2e-13   48.5   0.1    1.2e-12   47.3   0.1    1.7  1  PF13180.1  PDZ domain
     0.0013   17.1   0.2      0.046   12.0   0.1    2.1  2  PF10459.4  Peptidase S46
     0.0028   17.6   0.1     0.0094   15.9   0.1    1.9  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0091   15.4   0.2      0.049   13.0   0.1    2.2  3  PF02907.10 Hepatitis C virus NS3 protease
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.031   13.8   0.0    1.3  1  PF10208.4  Degradation arginine-rich protein for mis-folding
      0.037   13.4   0.1        9.3    5.7   0.0    2.4  2  PF02037.22 SAP domain
       0.11   12.2   0.0       0.26   11.0   0.0    1.5  1  PF12812.2  PDZ-like domain
       0.25   10.6   0.9       0.46    9.8   0.1    1.8  2  PF03683.8  Uncharacterised protein family (UPF0175)


Domain annotation for each model (and alignments):
>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.5   6.8e-23   9.4e-20       1     120 []     144     288 ..     144     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 6.8e-23
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............x.xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF13365.1   1 gtGfvvnkdglilTnaHvveparkgkghrasevrvvsldgrk.edhkakvvkvsaeqlDlAllqve.....................sedivgkggvkagsksssskqstkgnrvli...............i.tdaathpGsSGgPvldsdGrvvGl 120
                 g+Gfv +++g+i+Tn+Hv++ a+++     s + v   d+ k  d  a +v++ +e  D+A+l+v+                     s       ++ +g+  +   + t+g +  +               i td++++pG+SGgP+ld++Gr++G+
  MMETSP0890-20130614|9777_1 144 GSGFVWDNQGHIVTNYHVIQQAQRA---SISGLGVGVEDSMKsFD--AVLVGAEPE-KDIAVLKVNapksvlrpvnvgasnellvgqS-------AFAIGNPFGLDHTLTSGIISAVgrevmgiggrpikgcIqTDCSINPGNSGGPLLDASGRLIGV 288
                 8*******************88776...78888888888888666..********9.****************999999966665541.......333333333333333333333344455567777778778***********************8 PP

>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   7.4e-18     1e-14      26     217 ..     143     312 ..     123     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 7.4e-18
                 EE-EEEEETT.EEEEEGGGGTSGGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTSBESBCBCEEEEEBEHHHHHHTTTTTSTTTEEEEESTSSSB---------EEEEETEB---BEEETTCCBTTB.-EEEEEGGGGH CS
  PF00089.21  26 lCgGslisen.wvLTAaHcvknasdvkvvlgehnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekgksdtlqevevpvvsretcksayggkvtenmlcagakggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvytkvssyl 217
                 + +G++ +++  ++T+ H++++a++ ++ +g   l    ++    + + v++  + +p++   Dia+lk+++p   ++  rp++  a s++l vg++ ++  +g+++     +tl+++ +++v re +    gg+  +  ++++     ++++G+SGGPl+  +g l+G++++ ++ + +   +g+++++++++
  MMETSP0890-20130614|9777_1 143 SGSGFVWDNQgHIVTNYHVIQQAQRASI-SG---LGVGVED-SMKSFDAVLV--GAEPEK---DIAVLKVNAP---KSVLRPVNVGA-SNELLVGQSAFA--IGNPFGLD--HTLTSGIISAVGREVMGI--GGRPIKGCIQTDC----SINPGNSGGPLLDASGRLIGVNTAIYSPSGASAgIGFAIPIDTVR 312
                 45799999999**********9444444.33...4444443.3344555545..666666...**********...***********.887999966665..55665566..99***********97777..4555699999999....*************************5555444449*****99776 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1     9e-16   1.2e-12       1      78 [.     327     429 ..     327     433 .. 0.90

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 9e-16
   PF13180.1   1 gdiGvsvsqlen...........trgvlvvsVkessPaakaglkp...........GDiilkvdgkkvksltdlkslllkkkpGdtvkltvlR...dgkkktv 78 
                 + iG+sv +++             +gvlv++  +++P  +agl             GD i+kvdgk+vk+++dl + +   ++G++v+l vlR    gk++++
  MMETSP0890-20130614|9777_1 327 PSIGISVADDQVvrglrarlgsqLEGVLVMDAPSGTPGGDAGLVGclrrrdgalilGDLITKVDGKPVKNVEDLLNFIEELQVGSEVTLSVLRnakPGKEENL 429
                 5799999999999999999999999*****************7777***********************************************5554555555 PP

>> PF10459.4  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.019        26      32      70 ..     127     165 ..     108     170 .. 0.82
   2 !   12.0   0.1   3.4e-05     0.046     626     650 ..     265     289 ..     257     291 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.019
   PF10459.4  32 adlresskdAvvsflggCsasfVSpeGLvlTNhhcayga 70 
                  +++  s++A+    g +s+ +  ++G ++TN+h+ ++a
  MMETSP0890-20130614|9777_1 127 RQASPLSMRAIEVPQGSGSGFVWDNQGHIVTNYHVIQQA 165
                 44445569999777999999999***********98765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.4e-05
   PF10459.4 626 stnDitGGNsGSPvlnakgeLvGla 650
                 ++  i  GNsG P+l+a+g+L+G++
  MMETSP0890-20130614|9777_1 265 TDCSINPGNSGGPLLDASGRLIGVN 289
                 6777889****************97 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   6.9e-06    0.0094      40      80 ..     376     417 ..     373     418 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.9e-06
                 TTS.BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEEEE CS
  PF00595.19  40 agg.lkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLti 80 
                 ++g l  GD I++v+g++v nv+++ + ++  + ++evtL +
  MMETSP0890-20130614|9777_1 376 RDGaLILGDLITKVDGKPVKNVEDLLNFIEELQVGSEVTLSV 417
                 6788999*********************************88 PP

>> PF02907.10  Hepatitis C virus NS3 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   1.5e+03     100     124 ..     134     158 ..     117     173 .. 0.72
   2 ?   -3.4   0.0       3.9   5.3e+03      49      81 ..     193     225 ..     189     229 .. 0.79
   3 !   13.0   0.1   3.6e-05     0.049     102     146 ..     266     311 ..     255     314 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.1
  PF02907.10 100 prelselkGssGsPilCdsGhvvGl 124
                  r + + +Gs  + +  ++Gh+v  
  MMETSP0890-20130614|9777_1 134 MRAIEVPQGSGSGFVWDNQGHIVTN 158
                 4556666888888888899999864 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.9
  PF02907.10  49 addDlvvypaPaGaksltpCtcgasdlylvtrd 81 
                  ++D++v +  a ++ l+p ++gas+  lv ++
  MMETSP0890-20130614|9777_1 193 PEKDIAVLKVNAPKSVLRPVNVGASNELLVGQS 225
                 678888888888889999999999888887665 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 3.6e-05
  PF02907.10 102 elselkGssGsPilCdsGhvvGllvaavcsggvvkavrfv.Pvetl 146
                 + s   G sG+P+l  sG  +G+ +a+    g    + f  P++t+
  MMETSP0890-20130614|9777_1 266 DCSINPGNSGGPLLDASGRLIGVNTAIYSPSGASAGIGFAiPIDTV 311
                 667778********************************98899887 PP

>> PF10208.4  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.031     106     140 ..      48      82 ..      37      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF10208.4 106 klkvkelkkilaeWgeeckgcleksdfikkieelk 140
                      elk++l+e g + + clek+++++++++  
  MMETSP0890-20130614|9777_1  48 EFSTSELKRLLTERGVDFRDCLEKNELVERLQSSL 82 
                 56678**************************9764 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0068       9.3       2      18 ..      47      63 ..      46      64 .. 0.87
   2 ?    5.3   0.0    0.0095        13      24      34 ..      71      81 ..      70      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0068
                TT--HHHHHHHHHHTT- CS
  PF02037.22  2 skltVaeLKaeLkkrGL 18
                s ++ +eLK +L +rG 
  MMETSP0890-20130614|9777_1 47 SEFSTSELKRLLTERGV 63
                67899**********96 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0095
                HHHHHHHHHHH CS
  PF02037.22 24 KaeLieRLkeh 34
                K+eL+eRL+  
  MMETSP0890-20130614|9777_1 71 KNELVERLQSS 81
                99******975 PP

>> PF12812.2  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.26      52      75 ..     384     407 ..     373     409 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
   PF12812.2  52 viitsinnkptpnLdefievlkkl 75 
                  +it++++kp++n++++++++++l
  MMETSP0890-20130614|9777_1 384 DLITKVDGKPVKNVEDLLNFIEEL 407
                 58*****************99887 PP

>> PF03683.8  Uncharacterised protein family (UPF0175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00034      0.46      36      71 ..      39      76 ..      35      80 .. 0.87
   2 ?   -2.5   0.1       2.3   3.1e+03      39      49 ..      93     103 ..      93     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00034
   PF03683.8 36 SlgkAAelAglsrreFlelLarrgip.lh.yteeelee 71
                S + A+ ++++s  e ++lL +rg++ ++ ++++el e
  MMETSP0890-20130614|9777_1 39 SISDARSISEFSTSELKRLLTERGVDfRDcLEKNELVE 76
                8899**********************877777777765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.3
   PF03683.8  39 kAAelAglsrr 49 
                 +AA+lA+ls  
  MMETSP0890-20130614|9777_1  93 EAAKLASLSST 103
                 59*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.89
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|9804_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-17   61.7   0.2    4.5e-17   61.6   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    3.7e-16   58.2   1.3    2.6e-10   39.7   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    4.9e-10   38.4   4.4    1.7e-07   30.4   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.1e-08   34.5   0.4    1.2e-08   34.3   0.3    1.1  1  PF13414.1  TPR repeat
    2.7e-08   32.8   0.3    0.00017   21.0   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
      5e-08   32.1   3.3    8.6e-06   25.1   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    6.7e-07   29.7   0.2    7.5e-07   29.5   0.2    1.1  1  PF13432.1  Tetratricopeptide repeat
    2.8e-06   26.5   2.4    6.7e-05   22.2   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    6.5e-05   23.1   0.1    0.00027   21.1   0.0    1.9  2  PF13428.1  Tetratricopeptide repeat
    7.3e-05   22.5   2.5      0.086   12.9   0.1    2.7  2  PF13431.1  Tetratricopeptide repeat
     0.0017   17.9   2.3      0.095   12.4   0.1    2.2  2  PF07720.7  Tetratricopeptide repeat
     0.0017   18.3   0.1     0.0028   17.6   0.0    1.3  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0019   18.3   0.6     0.0066   16.7   0.0    1.9  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.1   4.2e-20   4.5e-17      11      63 ..       1      54 [.       1      55 [] 0.97

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 4.2e-20
   PF13424.1 11 lalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdyd 63
                lal+l+ +g+ydeA  ++++al++  ++lg++hp++a++lnnla l++++g+yd
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIhEESLGPNHPEVATYLNNLAGLLQQQGKYD 54
                799*********************999**************************8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.5e-13   2.6e-10       8      42 .]       1      35 [.       1      35 [. 0.98
   2 !   18.1   0.2   1.5e-06    0.0016       1      19 [.      36      54 ..      36      55 .] 0.95

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2.5e-13
   PF13374.1  8 LAlalrargryeeAlaleeealairrrllGddHPd 42
                LAl+l ++g+y+eA +++++al i+++ lG++HP+
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIHEESLGPNHPE 35
                8*********************************6 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.5e-06
   PF13374.1  1 taaalnnLAlalrargrye 19
                +a+ lnnLA +l+++g+y+
  MMETSP0890-20130614|9804_1 36 VATYLNNLAGLLQQQGKYD 54
                799***************8 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   1.6e-10   1.7e-07       7      32 ..       1      26 [.       1      28 [. 0.93
   2 !   10.2   0.3   0.00037      0.39       2      18 ..      38      54 ..      37      55 .] 0.90

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.6e-10
                HHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  7 lGnaylklgkydeAleyyekALelnP 32
                l++++ ++gkydeA  y+++AL++ +
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIHE 26
                799********************976 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00037
                HHHHHHHHHHHHTT-HH CS
  PF00515.23  2 kalynlGnaylklgkyd 18
                  l+nl+ +++++gkyd
  MMETSP0890-20130614|9804_1 38 TYLNNLAGLLQQQGKYD 54
                579*************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.3   1.1e-11   1.2e-08      10      55 ..       2      54 ..       1      55 [] 0.85

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.1e-11
   PF13414.1 10 GnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdye 55
                +  l ++g+ydeA  ++++Al++      pn++e   +++nlA +++++g +y+
  MMETSP0890-20130614|9804_1  2 ALLLKNQGKYDEAMPYFQRALKIHeeslgPNHPEvatYLNNLAGLLQQQG-KYD 54
                667789***************985555559998888899***********.585 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   0.00017       5      34 ..       1      30 [.       1      34 [. 0.88
   2 !   10.4   0.1    0.0004      0.42       2      16 ..      40      54 ..      38      55 .] 0.93

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.6e-07
   PF13176.1  5 LarlysrlgdyekAielyeraLaltkdpld 34
                La l  ++g+y++A  +++raL+++++ l+
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIHEESLG 30
                7889999***************99987665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0004
   PF13176.1  2 llnLarlysrlgdye 16
                l+nLa l +++g+y+
  MMETSP0890-20130614|9804_1 40 LNNLAGLLQQQGKYD 54
                79************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   8.2e-09   8.6e-06       7      32 ..       1      26 [.       1      28 [. 0.92
   2 !    8.3   0.2    0.0021       2.2       1      18 [.      37      54 ..      37      55 .] 0.92

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 8.2e-09
                HHHHHHHTT-HHHHHHHHHHHHHH-T CS
  PF07719.12  7 lGlayyklgdyeeAleafekAleldP 32
                l+l++ ++g+y+eA  +f++Al++  
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIHE 26
                7999*******************975 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0021
                HHHHHHHHHHHHHTT-HH CS
  PF07719.12  1 aealynlGlayyklgdye 18
                a +l+nl+ ++ ++g+y+
  MMETSP0890-20130614|9804_1 37 ATYLNNLAGLLQQQGKYD 54
                6799*************8 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.2   7.1e-10   7.5e-07       3      48 ..       1      54 [.       1      55 [] 0.97

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 7.1e-10
   PF13432.1  3 lArallraGdydeAlaaleaalala........Peaaeallllaeallrlgrld 48
                lA++l ++G+ydeA +++++al+ +        Pe a +l +la +l ++g++d
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIHeeslgpnhPEVATYLNNLAGLLQQQGKYD 54
                699999**********************************************98 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   6.4e-08   6.7e-05       7      31 ..       1      25 [.       1      28 [. 0.92
   2 ?    4.7   0.2     0.025        26       3      18 ..      39      54 ..      37      55 .] 0.89

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.4e-08
                ---HHHHTT-HHHHHHHHH---HHH CS
   PF13181.1  7 lGdiYrqlGdydkAkeylekalelk 31
                l++++++ G+yd+A+ y+++al++ 
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIH 25
                68999******************95 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.025
                -TTT---HHHHTT-HH CS
   PF13181.1  3 ayynlGdiYrqlGdyd 18
                +++nl+ ++ q G+yd
  MMETSP0890-20130614|9804_1 39 YLNNLAGLLQQQGKYD 54
                799************9 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.6e-07   0.00027       7      41 ..       1      40 [.       1      48 [. 0.83
   2 ?    1.3   0.0      0.61   6.4e+02       5      18 ..      41      54 ..      34      55 .] 0.75

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.6e-07
   PF13428.1  7 larallalGdpdeAiallrrala.....laPddaealllL 41
                la +l ++G +deA+ +++ral+     l+P+++e+ ++L
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKiheesLGPNHPEVATYL 40
                789999****************955555667777777665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.61
   PF13428.1  5 lalarallalGdpd 18
                  la +l ++G +d
  MMETSP0890-20130614|9804_1 41 NNLAGLLQQQGKYD 54
                36899999999887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0017       1.7      19      32 ..       1      14 [.       1      15 [. 0.95
   2 !   12.9   0.1   8.2e-05     0.086       2      30 ..      18      54 ..      17      55 .] 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0017
   PF13431.1 19 LAelllnnGdleeA 32
                LA+ll+n+G+++eA
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEA 14
                89**********99 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 8.2e-05
   PF13431.1  2 yekaleldPnn........adaynnLAelllnnGdle 30
                +++al+++ ++        a  +nnLA ll+ +G+++
  MMETSP0890-20130614|9804_1 18 FQRALKIHEESlgpnhpevATYLNNLAGLLQQQGKYD 54
                788888884444444477799999***********97 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1     9e-05     0.095      13      28 ..       7      20 ..       1      27 [. 0.77
   2 !    5.9   0.2    0.0096        10       7      18 ..      43      54 ..      39      55 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9e-05
                HTT-HHHHHHH..HHH CS
   PF07720.7 13 nkkkyqeArelfsYal 28
                n++ky+eA  +f+   
  MMETSP0890-20130614|9804_1  7 NQGKYDEAMPYFQ--R 20
                9**********99..5 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0096
                HHHHHHHTT-HH CS
   PF07720.7  7 lAaefynkkkyq 18
                lA  +++++ky+
  MMETSP0890-20130614|9804_1 43 LAGLLQQQGKYD 54
                67789******8 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-06    0.0028       1      42 [.       7      54 ..       7      55 .] 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.7e-06
                HTT-HHHHHHHHHHHCCC-ST.....-H.HHHCHHHHHHHHHH---HH CS
   PF12895.2  1 eqhnyknAlflaekllaespk.....dp.edaylyalAlclylngeyk 42
                +q+ y++A+ +++++l+ + +      p  ++yl +lA  l+++g+y+
  MMETSP0890-20130614|9804_1  7 NQGKYDEAMPYFQRALKIHEEslgpnHPeVATYLNNLAGLLQQQGKYD 54
                6899**************988887642235558888**********96 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.3e-06    0.0066       6      30 ..       1      25 [.       1      28 [. 0.89
   2 ?    0.1   0.0       1.2   1.3e+03       7      17 ..      45      54 ..      38      55 .] 0.62

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.3e-06
                HHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF13174.1  6 lalsyyklgdtdeAlealerlikey 30
                lal+++++g++deA+ +++r +k +
  MMETSP0890-20130614|9804_1  1 LALLLKNQGKYDEAMPYFQRALKIH 25
                7999999**************9976 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.2
                HHHHHHHHHHH CS
   PF13174.1  7 alsyyklgdtd 17
                +l+ +++g++d
  MMETSP0890-20130614|9804_1 45 GLL-QQQGKYD 54
                444.4455776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 191.01
//
Query:       MMETSP0890-20130614|9791_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-28   98.7   3.6    3.1e-28   97.1   2.5    1.8  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   2.5   2.2e-32   3.1e-28       1      64 []      10      72 ..      10      72 .. 0.99

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 2.2e-32
                HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
  PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                dyY +Lgv++da+d+++kkaYr+lalk HPDkn+dd+ +aeekfk+i+eAy+vLs++ekra yd
  MMETSP0890-20130614|9791_1 10 DYYTVLGVSRDADDSTLKKAYRRLALKNHPDKNPDDP-QAEEKFKRIAEAYDVLSNKEKRAAYD 72
                8************************************.9************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.80
# Mc/sec: 1072.37
//
Query:       MMETSP0890-20130614|9814_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.028   14.0   0.0    1.3  1  PF11132.3 Transcriptional regulator protein (SplA)


Domain annotation for each model (and alignments):
>> PF11132.3  Transcriptional regulator protein (SplA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.1e-06     0.028      22      57 ..      41      76 ..      36      86 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.1e-06
   PF11132.3 22 advanikeaevvehPedpeelalFlyetyyplaedd 57
                ++v +i+e e+ +hP+ +++l +F +e + pl  d 
  MMETSP0890-20130614|9814_1 41 STVQRIREQELKTHPRPQKQLQIFTHEAWIPLPRDE 76
                6899***************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 603.22
//
Query:       MMETSP0890-20130614|9832_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 644.54
//
Query:       MMETSP0890-20130614|9848_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.53
# Mc/sec: 271.29
//
Query:       MMETSP0890-20130614|9874_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-24   83.3   1.7      8e-12   44.5   0.3    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.3e-18   66.5   0.1    1.6e-18   66.2   0.1    1.1  1  PF13424.1  Tetratricopeptide repeat
    1.6e-13   49.4   0.9    4.8e-06   25.8   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    6.7e-11   41.1   1.1    4.2e-05   23.0   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    8.8e-11   41.1   0.2    1.1e-10   40.9   0.1    1.1  1  PF13414.1  TPR repeat
    2.3e-10   39.3   0.0    0.00025   20.5   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    1.9e-08   34.5   0.1    2.4e-08   34.3   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
    6.8e-06   25.3   0.2       0.02   14.5   0.0    2.2  2  PF13181.1  Tetratricopeptide repeat
    1.1e-05   25.4   0.5      0.048   14.2   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    1.4e-05   24.9   0.1      0.036   14.3   0.0    2.6  3  PF07721.9  Tetratricopeptide repeat
    1.6e-05   24.6   0.9        0.2   11.8   0.0    2.5  2  PF13431.1  Tetratricopeptide repeat
     0.0015   18.1   0.0        0.2   11.4   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
      0.004   17.4   0.2       0.57   10.6   0.0    2.5  2  PF13174.1  Tetratricopeptide repeat
     0.0085   16.1   0.0      0.055   13.5   0.0    1.9  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.012   15.3   0.1        1.7    8.4   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.079   12.7   0.1       0.12   12.0   0.1    1.6  1  PF13371.1  Tetratricopeptide repeat
      0.086   12.5   0.0       0.11   12.1   0.0    1.2  1  PF12968.2  Domain of Unknown Function (DUF3856)
       0.14   11.6   0.1        2.4    7.6   0.0    2.0  2  PF10938.3  YfdX protein
       0.14   12.0   0.9        3.1    7.7   0.0    2.1  2  PF10252.4  Casein kinase substrate phosphoprotein PP28


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3   1.1e-14     8e-12       6      41 ..       1      36 [.       1      37 [. 0.99
   2 !   38.6   0.0   8.1e-13   5.8e-10       3      40 ..      40      77 ..      38      78 .] 0.95

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.1e-14
   PF13374.1  6 nnLAlalrargryeeAlaleeealairrrllGddHP 41
                nnLA +l ++g+y+eA +l+e+al ir++ l+++HP
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAKPLHERALRIREEKLPPNHP 36
                9**********************************9 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 8.1e-13
   PF13374.1  3 aalnnLAlalrargryeeAlaleeealairrrllGddH 40
                + l+n A +l+++g+y+eA +l+++a +i ++++G++H
  MMETSP0890-20130614|9874_1 40 TGLSNRASLLQQQGKYDEAKPLLHRAIEILEKVHGPNH 77
                6689********************************** PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1   2.2e-21   1.6e-18       9      78 .]       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 2.2e-21
   PF13424.1  9 nnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                nnla++l  +g+ydeA  l e+al +  ++l+++hp  a+ l n a l++++g+ydeA+++l++A+ei ek
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAKPLHERALRIrEEKLPPNHPLFATGLSNRASLLQQQGKYDEAKPLLHRAIEILEK 71
                79************************9999**************************************986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1     6e-08   4.3e-05       5      32 ..       1      28 [.       1      30 [. 0.94
   2 !   25.8   0.0   6.7e-09   4.8e-06       2      30 ..      40      68 ..      39      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 6e-08
                HHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23  5 ynlGnaylklgkydeAleyyekALelnP 32
                +nl+ ++ ++gkydeA    e+AL++++
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAKPLHERALRIRE 28
                7************************986 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 6.7e-09
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                  l n++ +++++gkydeA     +A+e+
  MMETSP0890-20130614|9874_1 40 TGLSNRASLLQQQGKYDEAKPLLHRAIEI 68
                5799************************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.6e-06    0.0026       5      31 ..       1      27 [.       1      30 [. 0.91
   2 !   23.0   0.0   5.9e-08   4.2e-05       2      30 ..      40      68 ..      39      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.6e-06
                HHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  PF07719.12  5 ynlGlayyklgdyeeAleafekAleld 31
                +nl+ ++ ++g+y+eA+ + e+Al++ 
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAKPLHERALRIR 27
                58999*******************986 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 5.9e-08
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                 +l n++ ++ ++g+y+eA+ ++ +A+e+
  MMETSP0890-20130614|9874_1 40 TGLSNRASLLQQQGKYDEAKPLLHRAIEI 68
                6799***********************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   1.5e-13   1.1e-10       7      67 ..       1      68 [.       1      70 [. 0.91

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1.5e-13
   PF13414.1  7 kelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                ++l+  l ++g+ydeA  + e+Al+++     pn++     ++n+A +++++g +y+eA   +++A+e+
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAKPLHERALRIReeklpPNHPLfatGLSNRASLLQQQG-KYDEAKPLLHRAIEI 68
                68999999****************9976777799988888*************.6************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.4e-07   0.00025       3      32 ..       1      30 [.       1      34 [. 0.88
   2 !   17.1   0.0     4e-06    0.0029       2      28 ..      42      68 ..      41      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.4e-07
   PF13176.1  3 lnLarlysrlgdyekAielyeraLaltkdp 32
                +nLa l  ++g+y++A  l+eraL+++++ 
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAKPLHERALRIREEK 30
                79********************88887765 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4e-06
   PF13176.1  2 llnLarlysrlgdyekAielyeraLal 28
                l+n a+l +++g+y++A  l+ ra+++
  MMETSP0890-20130614|9874_1 42 LSNRASLLQQQGKYDEAKPLLHRAIEI 68
                7899*******************7765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   3.3e-11   2.4e-08       3      58 ..       3      66 ..       1      77 [. 0.91

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 3.3e-11
   PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58
                lA +l ++G+ydeA +++e+al+          P+ a  l ++a +l ++g++deA  ll +a+
  MMETSP0890-20130614|9874_1  3 LATLLGNQGKYDEAKPLHERALRIReeklppnhPLFATGLSNRASLLQQQGKYDEAKPLLHRAI 66
                8999**************99999999*******99*********************98887776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0013      0.91       6      30 ..       2      26 ..       1      30 [. 0.82
   2 !   14.5   0.0   2.8e-05      0.02       4      30 ..      42      68 ..      39      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0013
                T---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  6 nlGdiYrqlGdydkAkeylekalel 30
                nl+ ++ + G+yd+Ak   e+al +
  MMETSP0890-20130614|9874_1  2 NLATLLGNQGKYDEAKPLHERALRI 26
                8999***********9876666665 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.8e-05
                TTT---HHHHTT-HHHHHHHHH---HH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                + n+++++ q G+yd+Ak  l +a+e+
  MMETSP0890-20130614|9874_1 42 LSNRASLLQQQGKYDEAKPLLHRAIEI 68
                5699**************999999987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0011      0.79       7      31 ..       3      27 ..       1      42 [. 0.84
   2 !   14.2   0.0   6.6e-05     0.048       4      30 ..      42      68 ..      38      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0011
   PF13428.1  7 larallalGdpdeAiallrralala 31
                la +l ++G +deA  l +ral+  
  MMETSP0890-20130614|9874_1  3 LATLLGNQGKYDEAKPLHERALRIR 27
                89999****************9854 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6.6e-05
   PF13428.1  4 llalarallalGdpdeAiallrralal 30
                l  +a +l ++G +deA  ll ra++ 
  MMETSP0890-20130614|9874_1 42 LSNRASLLQQQGKYDEAKPLLHRAIEI 68
                6789********************984 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0047       3.4       6      21 ..       2      17 ..       1      22 [. 0.89
   2 ?   -1.5   0.0       6.3   4.5e+03      17      25 ..      20      28 ..      19      29 .. 0.72
   3 !   14.3   0.0     5e-05     0.036       3      26 .]      41      64 ..      39      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0047
                --HHHHHH-------H CS
   PF07721.9  6 aLArallalGdldeAr 21
                +LA +l  +G +deA 
  MMETSP0890-20130614|9874_1  2 NLATLLGNQGKYDEAK 17
                79*************6 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 6.3
                ----HHHHH CS
   PF07721.9 17 ldeAralle 25
                +++A+++ e
  MMETSP0890-20130614|9874_1 20 HERALRIRE 28
                678888766 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 5e-05
                HH---HHHHHH-------HHHHHT CS
   PF07721.9  3 allaLArallalGdldeAraller 26
                 l+++A +l+++G +deA  ll+r
  MMETSP0890-20130614|9874_1 41 GLSNRASLLQQQGKYDEAKPLLHR 64
                689***************999986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00028       0.2      17      33 ..       1      17 [.       1      18 [. 0.95
   2 !   11.4   0.1   0.00037      0.26       9      33 ..      35      59 ..      19      60 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00028
   PF13431.1 17 nnLAelllnnGdleeAe 33
                nnLA+ll n+G+++eA+
  MMETSP0890-20130614|9874_1  1 NNLATLLGNQGKYDEAK 17
                8**************97 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00037
   PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                +P  a  + n+A ll+ +G+++eA+
  MMETSP0890-20130614|9874_1 35 HPLFATGLSNRASLLQQQGKYDEAK 59
                566677788**************97 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.027        20      13      20 ..       9      16 ..       3      20 .. 0.90
   2 !   11.4   0.0   0.00027       0.2       8      20 ..      46      58 ..      41      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.027
                HTT-HHHH CS
   PF07720.7 13 nkkkyqeA 20
                n++ky+eA
  MMETSP0890-20130614|9874_1  9 NQGKYDEA 16
                8******9 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00027
                HHHHHHTT-HHHH CS
   PF07720.7  8 AaefynkkkyqeA 20
                A  +++++ky+eA
  MMETSP0890-20130614|9874_1 46 ASLLQQQGKYDEA 58
                7889********9 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.06        43       5      20 ..       2      17 ..       2      26 .. 0.87
   2 !   10.6   0.0    0.0008      0.57       4      28 ..      43      67 ..      40      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.06
                HHHHHHHHHHHHHHHH CS
   PF13174.1  5 klalsyyklgdtdeAl 20
                +la ++ ++g++deA+
  MMETSP0890-20130614|9874_1  2 NLATLLGNQGKYDEAK 17
                689999999******8 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0008
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  4 yklalsyyklgdtdeAlealerlik 28
                 ++a +++++g++deA+ +l r i+
  MMETSP0890-20130614|9874_1 43 SNRASLLQQQGKYDEAKPLLHRAIE 67
                57899999999******99999886 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.6e-05     0.055      31      82 ..       3      63 ..       1      65 [. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.6e-05
                HHHHHHH---HHHHHHHHHC......TSHCHCBHHHHHHH.H..HHHHHTT-HHHHCCCHH CS
   PF12895.2 31 lAlclylngeykrAyellrk......leldssslgcryll.A..rcllklgkydeAiavLe 82
                lA  l ++g+y++A  l ++      ++l ++++  +  l +    l ++gkydeA  +L 
  MMETSP0890-20130614|9874_1  3 LATLLGNQGKYDEAKPLHERalrireEKLPPNHPLFATGLsNraSLLQQQGKYDEAKPLLH 63
                6888889999999977777687777777777775555533343144447778999987775 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.024        17      13      33 ..       5      25 ..       2      29 .. 0.83
   2 ?    8.4   0.0    0.0024       1.7      11      38 ..      45      72 ..      38      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.024
                HHHHHTT-HHHHHHHHHHHHH CS
  PF04212.13 13 veaDeagkyeeAlelYkeAle 33
                +  +++gky+eA  l + Al 
  MMETSP0890-20130614|9874_1  5 TLLGNQGKYDEAKPLHERALR 25
                557899******999999986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0024
                HHHHHHHTT-HHHHHHHHHHHHHHHHHH CS
  PF04212.13 11 kAveaDeagkyeeAlelYkeAlelLlqa 38
                +A    ++gky+eA  l   A+e+L+++
  MMETSP0890-20130614|9874_1 45 RASLLQQQGKYDEAKPLLHRAIEILEKV 72
                55556689*****************985 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00017      0.12      32      57 ..      42      67 ..       3      77 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   PF13371.1 32 rRDrGlllaqlgclaaAaedLeafle 57
                +  r+ ll+q+g + +A   L +++e
  MMETSP0890-20130614|9874_1 42 LSNRASLLQQQGKYDEAKPLLHRAIE 67
                678******************99996 PP

>> PF12968.2  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.11      61     135 ..       3      74 ..       1      77 [. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00015
   PF12968.2  61 lsealaklgrydealesaekalryfnrrGeleqdeGklWiaavfsravaleelGrkeealkefrkagemiaerkG 135
                 l++ l + g+ydea    e+alr    r e    +  l+ + + +ra  l++ G+ +ea   ++ a e+++  +G
  MMETSP0890-20130614|9874_1   3 LATLLGNQGKYDEAKPLHERALRI---REEKLPPNHPLFATGLSNRASLLQQQGKYDEAKPLLHRAIEILEKVHG 74 
                 666677788899998888999885...444445566799999***************************987766 PP

>> PF10938.3  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.15   1.1e+02     128     137 ..       8      17 ..       2      28 .. 0.68
   2 ?    7.6   0.0    0.0034       2.4     124     144 ..      46      66 ..      40      73 .. 0.61

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.15
   PF10938.3 128 ldegkyyeAk 137
                  ++gky+eAk
  MMETSP0890-20130614|9874_1   8 GNQGKYDEAK 17 
                 4678888886 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0034
   PF10938.3 124 AaelldegkyyeAkaaLkkAe 144
                 A  l ++gky+eAk  L  A 
  MMETSP0890-20130614|9874_1  46 ASLLQQQGKYDEAKPLLHRAI 66 
                 444555667777766666654 PP

>> PF10252.4  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.11        82      45      67 ..       7      29 ..       4      31 .. 0.84
   2 ?    7.7   0.0    0.0043       3.1      40      64 ..      44      68 ..      39      73 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.11
   PF10252.4 45 lhaeGKteearaDLaRLalireq 67
                l  +GK +ea+   +R   ire+
  MMETSP0890-20130614|9874_1  7 LGNQGKYDEAKPLHERALRIREE 29
                5679*******988998888886 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0043
   PF10252.4 40 erymklhaeGKteearaDLaRLali 64
                +r   l+++GK +ea+  L R  +i
  MMETSP0890-20130614|9874_1 44 NRASLLQQQGKYDEAKPLLHRAIEI 68
                577789**********999997666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 283.21
//
Query:       MMETSP0890-20130614|9935_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-47  161.3  18.8    7.7e-28   96.9   5.6    2.0  2  PF01226.12 Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> PF01226.12  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   2.0   7.5e-24     1e-19       5     129 ..      42     172 ..      38     199 .. 0.88
   2 !   96.9   5.6   5.6e-32   7.7e-28     137     247 ..     229     343 ..     211     345 .. 0.92

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 7.5e-24
                 -----------HHHHHHHHHHHHHH-------HHHHHHHHT---TTS----TTT--.--GGG---HHHHH-.----SSTTTC.HHHHCC---.....-SSHHHHHHHHHHH-------HHHHHHHHHHTGGG CS
  PF01226.12   5 veavvaagekkakksllkllllgilAGafialgallalvvasglaaaepglakllg.glvFpvGlilvvll.gaeLfTgntlllvlallekk.....vslkkllrnwvivyigNlvGallvalllaasgvlt 129
                 v +v +  ++++ +++l+++ll++ AG+++++g+l+++ v++    +++g++++++ g+  p+Gl+++v++ g+eL+T n +++++++l+ +       +k+ll nw+++++gN++Ga+l + ++a+ ++l 
  MMETSP0890-20130614|9935_1  42 VIQVGDIVHERMLSKPLTTFLLSVQAGLLLSFGVLMSCQVGGRW-GSSTGVNNFVFaGFGIPFGLTFIVITqGSELITANYMFCSFGVLAAEpedrpRAIKALLMNWFVCWWGNIAGAILHFTMFAWQTGLI 172
                 556677778888999****************************9.788999998862678******99987478***************9887788899**************************9998876 PP

  == domain 2    score: 96.9 bits;  conditional E-value: 5.6e-32
                 HHHHHHHTTSS--HHHHHH---HHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH---TTTS.....S.HHHHHHHTHHHHH-------------HHH CS
  PF01226.12 137 alvkiaeakvslsfleaflrgilcNwlVclavwlalaakdiagkilaiwlpifafvasgfeHsvanmfliplgiflganv.....tlvskfilknlipvtlGNivGGavfvgllyw 247
                 +l++ a+ak++++f + +lrg +cNw+Vcla+wl+++a++ ++k+++iwlpi +f+ sgf H v+n flip gi++g  +     + ++++++ n++pvt+G i+G+  +v  +++
  MMETSP0890-20130614|9935_1 229 KLMNAARAKCTANFATSILRGWGCNWMVCLAIWLQMCATEPISKFIMIWLPIELFISSGFDHLVVNEFLIPGGIMVGGYYldhrvN-WGNAFFFNFLPVTIGSILGAWTLVFPFWY 343
                 68899***********************************************************************9977999956.********************999865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 1079.77
//
Query:       MMETSP0890-20130614|9968_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.57   10.0   3.1       0.74    9.6   2.1    1.2  1  PF09871.4 Uncharacterized protein conserved in archaea (DUF2098)
        9.9    5.8   8.1         11    5.7   5.6    1.1  1  PF14235.1 Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> PF09871.4  Uncharacterized protein conserved in archaea (DUF2098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.1   0.00011      0.74      49      91 .]      13      55 ..       5      55 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00011
   PF09871.4 49 vdkkkekkeeeeedkeelierikkeeeeleevdleseeaeGgG 91
                + k + ++ ++e    e+ +rikke+ +  +++ + +++ GgG
  MMETSP0890-20130614|9968_1 13 TQKPEIRNAQREAALRESKARIKKEKADKAKAKQQVAKQAGGG 55
                4567889999****************88888888888888888 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.6    0.0016        11      67     107 ..      15      63 ..       3      68 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0016
   PF14235.1  67 s........aaelkkkiekykkekkrikseakeleakakeaeeesdeal 107
                 +        +a+l++  +++kkek++  + +++++++a   +++s++ +
  MMETSP0890-20130614|9968_1  15 KpeirnaqrEAALRESKARIKKEKADKAKAKQQVAKQAGGGKKDSKHIN 63 
                 1222223358888999999999999999999999999988888777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1403  (0.102618); expected 273.4 (0.02)
Passed bias filter:                      784  (0.0573435); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 220.46
//
Query:       MMETSP0890-20130614|9966_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-37  126.8  13.4    3.1e-16   58.6   0.5    5.1  5  PF13414.1  TPR repeat
    1.6e-28   96.9   8.3    1.1e-06   27.7   0.0    7.2  7  PF00515.23 Tetratricopeptide repeat
    7.5e-22   75.3  10.9    0.00099   18.7   0.0    7.2  7  PF07719.12 Tetratricopeptide repeat
    1.1e-12   46.9   2.8    0.00022   21.0   0.1    5.1  4  PF13431.1  Tetratricopeptide repeat
    6.2e-12   44.9   5.7      0.052   14.0   0.0    6.7  7  PF13428.1  Tetratricopeptide repeat
    1.7e-11   44.3  12.1     0.0081   16.6   0.1    5.3  6  PF13432.1  Tetratricopeptide repeat
    9.9e-10   38.0   1.1      0.011   15.4   0.0    5.2  6  PF13371.1  Tetratricopeptide repeat
    6.9e-08   31.6   3.0       0.32   10.7   0.0    6.2  6  PF13176.1  Tetratricopeptide repeat
    1.2e-06   28.1  11.0        1.3    8.8   0.2    5.0  5  PF13424.1  Tetratricopeptide repeat
    7.3e-05   22.1   5.7        7.1    6.5   0.0    6.5  7  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   14.9   2.0        3.4    7.2   0.1    3.4  4  PF04781.7  Protein of unknown function (DUF627)
      0.018   15.0   9.4        2.1    8.4   0.9    4.5  4  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.018   15.1   5.8         14    5.8   0.0    4.4  4  PF03704.12 Bacterial transcriptional activator domain
      0.022   14.4   8.4        9.7    5.8   0.0    5.1  5  PF12968.2  Domain of Unknown Function (DUF3856)
      0.048   13.8   2.0        6.2    7.0   0.1    3.6  3  PF00435.16 Spectrin repeat
      0.081   13.3   8.9         19    5.8   0.1    5.6  5  PF13174.1  Tetratricopeptide repeat
        0.1   12.4   0.2        0.1   12.4   0.1    2.8  2  PF09403.5  Adhesion protein FadA
       0.12   12.1  11.6        1.1    9.0   0.3    4.5  4  PF04212.13 MIT (microtubule interacting and transport) domain
          2    8.3   4.5         10    6.0   0.1    3.4  3  PF13374.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.5   4.3e-19   3.1e-16       2      66 ..       5      68 ..       4      71 .. 0.92
   2 !   18.6   0.0   1.4e-06   0.00098      18      69 .]      55     105 ..      54     105 .. 0.95
   3 !    7.6   0.0    0.0036       2.6       4      36 ..     127     159 ..     124     165 .. 0.88
   4 !   44.5   0.4   1.1e-14   7.9e-12       3      69 .]     187     257 ..     185     257 .. 0.92
   5 !   20.4   0.0   3.7e-07   0.00027      18      66 ..     241     288 ..     241     291 .. 0.93

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 4.3e-19
   PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66
                +A+alk +Gn++f+ g++ eAi++y+ A+eldp +   y+n+A+ay  l  ++ee +ed + +++
  MMETSP0890-20130614|9966_1  5 QAQALKKEGNKFFQGGKHVEAIAKYSAAIELDPTDVTFYSNRAAAYAALE-KWEESAEDGRACIR 68
                79***********************************************8.57999999777776 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.4e-06
   PF13414.1  18 dydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                 +++e+ e  + +++  ++  + y++lA a++ l  +y+eA++++++ l+ dP
  MMETSP0890-20130614|9966_1  55 KWEESAEDGRACIRVKKDFIKGYFRLAVALRALK-RYKEAVDNIKMGLAVDP 105
                 899999**************************96.8*************998 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0036
   PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnn 36 
                 +a  e++ +l ++g+++e ++  +++l+ld  n
  MMETSP0890-20130614|9966_1 127 KAITEKADELAQNGEFAECLKTIDRGLALDGGN 159
                 677899***********************9766 PP

  == domain 4    score: 44.5 bits;  conditional E-value: 1.1e-14
   PF13414.1   3 AealkelGnalfkegdydeAieayekAle.ldpnnae....lyynlAlaylklgkdyeeAledyekAleldP 69 
                 +e +ke+G   +k+ d+++Ai ay+++l  l+ ++ e    +++n+A++y +l  +++  +ed++ +le dP
  MMETSP0890-20130614|9966_1 187 PERAKEEGDTKYKNADFEGAISAYSRCLNdLSDKSSElalkALANRAACYKQLS-NFDGTIEDCTAVLEVDP 257
                 6789************************7677777777999************9.7***************9 PP

  == domain 5    score: 20.4 bits;  conditional E-value: 3.7e-07
   PF13414.1  18 dydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                 ++d+ ie ++  le dp+n + + ++A+a++    +y++Al+d + +l+
  MMETSP0890-20130614|9966_1 241 NFDGTIEDCTAVLEVDPDNVKSLVRRAQALEAVE-RYKSALQDVKTVLA 288
                 688889**************************96.8*******999886 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     4e-07   0.00029       1      34 []       6      39 ..       6      39 .. 0.95
   2 !    9.2   0.0    0.0012      0.86       4      23 ..      43      62 ..      40      72 .. 0.90
   3 !   22.4   0.0     8e-08   5.8e-05       2      34 .]      75     107 ..      74     107 .. 0.95
   4 ?    5.5   0.0     0.017        12       3      32 ..     128     157 ..     126     159 .. 0.85
   5 ?    4.1   0.0     0.047        34      12      28 ..     198     214 ..     193     215 .. 0.86
   6 !   27.7   0.0   1.6e-09   1.1e-06       2      34 .]     227     259 ..     226     259 .. 0.97
   7 !    6.6   0.0    0.0075       5.4       2      28 ..     261     287 ..     260     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPnn 34
                a+al+  Gn +++ gk+ eA++ y+ A+el+P++
  MMETSP0890-20130614|9966_1  6 AQALKKEGNKFFQGGKHVEAIAKYSAAIELDPTD 39
                7899999*************************86 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0012
                HHHHHHHHHHTT-HHHHHHH CS
  PF00515.23  4 lynlGnaylklgkydeAley 23
                + n+++ay  l+k++e  e+
  MMETSP0890-20130614|9966_1 43 YSNRAAAYAALEKWEESAED 62
                99*************98775 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 8e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                 k +++l++a++ l++y+eA++  +  L ++P n
  MMETSP0890-20130614|9966_1  75 KGYFRLAVALRALKRYKEAVDNIKMGLAVDPGN 107
                 78*****************************87 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
  PF00515.23   3 alynlGnaylklgkydeAleyyekALelnP 32 
                 a   ++  + ++g++ e+l+  ++ L l+ 
  MMETSP0890-20130614|9966_1 128 AITEKADELAQNGEFAECLKTIDRGLALDG 157
                 5567888999****************9995 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.047
                 HHTT-HHHHHHHHHHHH CS
  PF00515.23  12 lklgkydeAleyyekAL 28 
                 +k+ +++ A+ +y+++L
  MMETSP0890-20130614|9966_1 198 YKNADFEGAISAYSRCL 214
                 78889**********98 PP

  == domain 6    score: 27.7 bits;  conditional E-value: 1.6e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                 kal n++++y +l ++d  +e++  +Le++P+n
  MMETSP0890-20130614|9966_1 227 KALANRAACYKQLSNFDGTIEDCTAVLEVDPDN 259
                 79*****************************98 PP

  == domain 7    score: 6.6 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF00515.23   2 kalynlGnaylklgkydeAleyyekAL 28 
                 k+l ++++a+   ++y+ Al++ + +L
  MMETSP0890-20130614|9966_1 261 KSLVRRAQALEAVERYKSALQDVKTVL 287
                 7789*****************977766 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06   0.00099       1      34 []       6      39 ..       6      39 .. 0.95
   2 !   10.7   0.1    0.0005      0.36       3      29 ..      42      68 ..      40      73 .. 0.87
   3 !   17.7   0.0   2.8e-06     0.002       2      34 .]      75     107 ..      74     107 .. 0.93
   4 !    7.9   0.0     0.004       2.9       6      33 ..     131     158 ..     126     159 .. 0.87
   5 ?    5.1   0.1      0.03        22       7      28 ..     193     214 ..     188     216 .. 0.88
   6 !   10.0   0.0   0.00081      0.58       2      34 .]     227     259 ..     226     259 .. 0.96
   7 ?    6.3   0.0     0.012       8.9       3      28 ..     262     287 ..     260     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                a+al   G+  ++ g++ eA++ +  A+eldP++
  MMETSP0890-20130614|9966_1  6 AQALKKEGNKFFQGGKHVEAIAKYSAAIELDPTD 39
                6789999*************************97 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0005
                HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  PF07719.12  3 alynlGlayyklgdyeeAleafekAle 29
                 + n++ ay++l ++ee +e+ + +++
  MMETSP0890-20130614|9966_1 42 FYSNRAAAYAALEKWEESAEDGRACIR 68
                699****************99888876 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +++++l+ a+++l++y+eA++  +  l+ dP+n
  MMETSP0890-20130614|9966_1  75 KGYFRLAVALRALKRYKEAVDNIKMGLAVDPGN 107
                 689*******************99999999987 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.004
                 HHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
  PF07719.12   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 + ++ ++++g+++e+l+  ++ l+ld +
  MMETSP0890-20130614|9966_1 131 EKADELAQNGEFAECLKTIDRGLALDGG 158
                 568899*******************976 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.03
                 HHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   7 lGlayyklgdyeeAleafekAl 28 
                  G+  yk+ d+e A+ a+ ++l
  MMETSP0890-20130614|9966_1 193 EGDTKYKNADFEGAISAYSRCL 214
                 57788999***********998 PP

  == domain 6    score: 10.0 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
  PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +al n++ +y +l +++  +e++  +le dP+n
  MMETSP0890-20130614|9966_1 227 KALANRAACYKQLSNFDGTIEDCTAVLEVDPDN 259
                 6899***************************98 PP

  == domain 7    score: 6.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
  PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                  l ++++a+++  +y+ Al++ + +l
  MMETSP0890-20130614|9966_1 262 SLVRRAQALEAVERYKSALQDVKTVL 287
                 6889***************9988777 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.1e-07   0.00022       2      32 ..      29      59 ..      28      61 .. 0.93
   2 !    8.6   0.0     0.003       2.1       4      33 ..      65      94 ..      64      95 .. 0.87
   3 ?   -1.1   0.0       3.6   2.6e+03      15      29 ..     228     242 ..     225     246 .. 0.81
   4 !   13.0   0.0   0.00011     0.082       3      34 .]     250     281 ..     248     281 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.1e-07
   PF13431.1  2 yekaleldPnnadaynnLAelllnnGdleeA 32
                y  a+eldP+++ +y n+A +++++ ++ee+
  MMETSP0890-20130614|9966_1 29 YSAAIELDPTDVTFYSNRAAAYAALEKWEES 59
                899***********************99975 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.003
   PF13431.1  4 kaleldPnnadaynnLAelllnnGdleeAe 33
                 +++  ++    y++LA++l ++++++eA 
  MMETSP0890-20130614|9966_1 65 ACIRVKKDFIKGYFRLAVALRALKRYKEAV 94
                578888888889****************95 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 3.6
   PF13431.1  15 aynnLAelllnnGdl 29 
                 a+ n+A +++ + ++
  MMETSP0890-20130614|9966_1 228 ALANRAACYKQLSNF 242
                 788999999988776 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 0.00011
   PF13431.1   3 ekaleldPnnadaynnLAelllnnGdleeAeq 34 
                    le dP+n+ ++ ++A++l +  +++ A+q
  MMETSP0890-20130614|9966_1 250 TAVLEVDPDNVKSLVRRAQALEAVERYKSALQ 281
                 6789***********************99987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0013      0.93      11      42 ..      16      47 ..       5      49 .. 0.85
   2 ?    2.0   0.1      0.54   3.9e+02       4      22 ..      43      61 ..      40      69 .. 0.78
   3 !   14.0   0.0   7.2e-05     0.052       4      40 ..      77     113 ..      74     117 .. 0.91
   4 ?    6.8   0.0     0.015        11       6      35 ..     131     160 ..     126     168 .. 0.85
   5 ?    2.0   0.0      0.53   3.8e+02      14      42 ..     200     230 ..     194     231 .. 0.75
   6 ?    7.3   0.0     0.011       7.7       2      43 ..     227     268 ..     225     269 .. 0.90
   7 ?    3.6   0.1      0.17   1.2e+02       4      29 ..     263     288 ..     260     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0013
   PF13428.1 11 llalGdpdeAiallrralalaPddaealllLa 42
                +++ G + eAia + +a++l+P+d +++ + a
  MMETSP0890-20130614|9966_1 16 FFQGGKHVEAIAKYSAAIELDPTDVTFYSNRA 47
                677899******************99887666 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.54
   PF13428.1  4 llalarallalGdpdeAia 22
                +  +a+a++al+ ++e ++
  MMETSP0890-20130614|9966_1 43 YSNRAAAYAALEKWEESAE 61
                6789999999999998665 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 7.2e-05
   PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealll 40 
                 + +la al+al +++eA++  +  la +P++a++ ++
  MMETSP0890-20130614|9966_1  77 YFRLAVALRALKRYKEAVDNIKMGLAVDPGNADLKKQ 113
                 889*****************************98765 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.015
   PF13428.1   6 alarallalGdpdeAiallrralalaPdda 35 
                 + a+ l+++G+++e ++  +r lal+ ++ 
  MMETSP0890-20130614|9966_1 131 EKADELAQNGEFAECLKTIDRGLALDGGNK 160
                 5678899*****************998875 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.53
   PF13428.1  14 lGdpdeAiallrralal..aPddaealllLa 42 
                 + d+++Ai ++ r l +  + +++ al++La
  MMETSP0890-20130614|9966_1 200 NADFEGAISAYSRCLNDlsDKSSELALKALA 230
                 689**********997532455666777776 PP

  == domain 6    score: 7.3 bits;  conditional E-value: 0.011
   PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLar 43 
                 +al+ +a+ + +l ++d+ i+ + ++l+ +Pd+   l + a+
  MMETSP0890-20130614|9966_1 227 KALANRAACYKQLSNFDGTIEDCTAVLEVDPDNVKSLVRRAQ 268
                 589999***************************988877777 PP

  == domain 7    score: 3.6 bits;  conditional E-value: 0.17
   PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                 l ++a+al+a ++++ A++  + +la
  MMETSP0890-20130614|9966_1 263 LVRRAQALEAVERYKSALQDVKTVLA 288
                 56899999999999999987777766 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.1e-05    0.0081       3      55 ..      12      64 ..      10      72 .. 0.91
   2 !   10.1   0.0    0.0013      0.92      34      65 .]      77     108 ..      67     108 .. 0.87
   3 !    7.9   0.0    0.0064       4.6       2      33 ..     131     162 ..     130     179 .. 0.86
   4 !    9.2   0.0    0.0025       1.8       3      64 ..     193     259 ..     191     260 .. 0.89
   5 ?    7.2   0.0      0.01       7.4      21      52 ..     250     281 ..     246     293 .. 0.87
   6 ?    4.1   0.3       0.1        72       3      42 ..     266     306 ..     264     318 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-05
   PF13432.1  3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallr 55
                +++ +++ G+  eA+a ++aa++l+P ++ ++ ++a a+++l +++e+a+  r
  MMETSP0890-20130614|9966_1 12 EGNKFFQGGKHVEAIAKYSAAIELDPTDVTFYSNRAAAYAALEKWEESAEDGR 64
                688999****************************************9997555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0013
   PF13432.1  34 llllaeallrlgrldeAaallraalalaPddp 65 
                 +++la+al +l+r++eA+  ++  la +P+++
  MMETSP0890-20130614|9966_1  77 YFRLAVALRALKRYKEAVDNIKMGLAVDPGNA 108
                 899**************999999998888875 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0064
   PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaea 33 
                 ++A++l ++G+++e+l+ +++ lal+ ++ + 
  MMETSP0890-20130614|9966_1 131 EKADELAQNGEFAECLKTIDRGLALDGGNKQL 162
                 689*********************99777665 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0025
   PF13432.1   3 lArallraGdydeAlaaleaalala.....PeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                 +++  +++ d++ A+ a+++ l +       +a  al ++a ++ +l+++d+ ++   a l+ +Pd+
  MMETSP0890-20130614|9966_1 193 EGDTKYKNADFEGAISAYSRCLNDLsdkssELALKALANRAACYKQLSNFDGTIEDCTAVLEVDPDN 259
                 678889*******************8777666*******************9999888888888876 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 0.01
   PF13432.1  21 eaalalaPeaaeallllaeallrlgrldeAaa 52 
                  a+l+ +P+++  l ++a+al +  r++ A++
  MMETSP0890-20130614|9966_1 250 TAVLEVDPDNVKSLVRRAQALEAVERYKSALQ 281
                 5899999*********************9995 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.1
   PF13432.1   3 lArallraGdydeAlaaleaalala.Peaaeallllaeall 42 
                 +A+al +  +y+ Al+  +++la +  +  +a + la    
  MMETSP0890-20130614|9966_1 266 RAQALEAVERYKSALQDVKTVLAMPaKDVGQANWTLANQMQ 306
                 8999*******************997777777777776555 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05     0.011      10      58 ..      21      69 ..      16      73 .. 0.86
   2 ?   -0.3   0.0       1.3   9.1e+02      37      60 ..      82     105 ..      78     123 .. 0.60
   3 ?    1.1   0.0      0.45   3.2e+02       6      25 ..     137     156 ..     136     162 .. 0.88
   4 ?    1.1   0.0      0.46   3.3e+02      38      69 ..     196     227 ..     178     231 .. 0.72
   5 !   10.0   0.0   0.00074      0.53      28      64 ..     225     261 ..     199     269 .. 0.75
   6 !   11.8   0.0   0.00021      0.15       8      57 ..     239     288 ..     234     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
   PF13371.1 10 dferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflel 58
                ++ +A+a +   ++l+P d+  +  r+ ++a l+ +++ aed +a++ +
  MMETSP0890-20130614|9966_1 21 KHVEAIAKYSAAIELDPTDVTFYSNRAAAYAALEKWEESAEDGRACIRV 69
                5677777888889*****************************8888765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.3
   PF13371.1  37 lllaqlgclaaAaedLeaflelcp 60 
                  +l  l ++ +A++     l+++p
  MMETSP0890-20130614|9966_1  82 VALRALKRYKEAVDNIKMGLAVDP 105
                 556667777777776666666666 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.45
   PF13371.1   6 lreedferALavverlllla 25 
                 +++++f++ L+ ++r l+l+
  MMETSP0890-20130614|9966_1 137 AQNGEFAECLKTIDRGLALD 156
                 78999**********99886 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.46
   PF13371.1  38 llaqlgclaaAaedLeaflelcpdapdaelir 69 
                   ++  ++++A+ +++++l+   d +   +++
  MMETSP0890-20130614|9966_1 196 TKYKNADFEGAISAYSRCLNDLSDKSSELALK 227
                 5566678999****999996665555555555 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00074
   PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                 ++  +  r+ ++ ql ++ + +ed +a le++pd   
  MMETSP0890-20130614|9966_1 225 ALKALANRAACYKQLSNFDGTIEDCTAVLEVDPDNVK 261
                 5566778**************************8655 PP

  == domain 6    score: 11.8 bits;  conditional E-value: 0.00021
   PF13371.1   8 eedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeafle 57 
                    f+ +++ +  +l+++Pd +  +  r+ +l+  +++  A++d  + l+
  MMETSP0890-20130614|9966_1 239 LSNFDGTIEDCTAVLEVDPDNVKSLVRRAQALEAVERYKSALQDVKTVLA 288
                 56678888899999******************************999885 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.13        94      10      35 ..      17      40 ..      16      41 .. 0.85
   2 ?    2.7   0.2      0.17   1.2e+02       2      20 ..      43      61 ..      43      61 .. 0.90
   3 !   10.7   0.0   0.00044      0.32       2      35 ..      77     108 ..      76     109 .. 0.93
   4 ?    2.2   0.0      0.24   1.7e+02      13      28 ..     201     217 ..     194     223 .. 0.80
   5 ?    5.6   0.0     0.019        14       1      35 [.     228     260 ..     228     261 .. 0.90
   6 ?    0.7   0.0      0.75   5.4e+02       2      20 ..     263     281 ..     262     295 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.13
   PF13176.1 10 srlgdyekAielyeraLaltkdplda 35
                ++ g++ +Ai  y +  a++ dp d+
  MMETSP0890-20130614|9966_1 17 FQGGKHVEAIAKYSA--AIELDPTDV 40
                5779999********..999999886 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.17
   PF13176.1  2 llnLarlysrlgdyekAie 20
                ++n a +y +l ++e+ +e
  MMETSP0890-20130614|9966_1 43 YSNRAAAYAALEKWEESAE 61
                68999**********9876 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00044
   PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdplda 35 
                 +++La++ ++l +y++A++  +   +l+ dp++a
  MMETSP0890-20130614|9966_1  77 YFRLAVALRALKRYKEAVDNIKM--GLAVDPGNA 108
                 789********************..*****9986 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.24
   PF13176.1  13 gdyekAielyeraL.al 28 
                  d+e Ai++y r+L  l
  MMETSP0890-20130614|9966_1 201 ADFEGAISAYSRCLnDL 217
                 69********9987665 PP

  == domain 5    score: 5.6 bits;  conditional E-value: 0.019
   PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdplda 35 
                 al n a +y +l +++  ie +++  +l+ dp+++
  MMETSP0890-20130614|9966_1 228 ALANRAACYKQLSNFDGTIEDCTA--VLEVDPDNV 260
                 79999*******************..888888775 PP

  == domain 6    score: 0.7 bits;  conditional E-value: 0.75
   PF13176.1   2 llnLarlysrlgdyekAie 20 
                 l++ a++ +++ +y+ A++
  MMETSP0890-20130614|9966_1 263 LVRRAQALEAVERYKSALQ 281
                 5666777777777777765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2    0.0018       1.3       5      67 ..       6      61 ..       3      72 .. 0.83
   2 !    7.5   0.0    0.0046       3.3       8      28 ..      77      97 ..      70     105 .. 0.75
   3 ?   -2.1   0.0       4.7   3.4e+03      12      33 ..     133     154 ..     125     156 .. 0.73
   4 !    7.0   0.2    0.0067       4.8      13      63 ..     195     243 ..     191     257 .. 0.77
   5 !    8.5   0.0    0.0022       1.6       4      47 ..     259     303 ..     256     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0018
   PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAle 67
                a++l   ++ +++ g++ eA++ y  a+el      d+ d ++ + n a +y+al++ +e+ e
  MMETSP0890-20130614|9966_1  6 AQALKKEGNKFFQGGKHVEAIAKYSAAIEL------DPTD-VTFYSNRAAAYAALEKWEESAE 61
                677778888899999999999999999998......4566.899***********99999765 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0046
   PF13424.1  8 lnnlalvlrrlgdydeAlely 28
                +++la +lr+l++y+eA + +
  MMETSP0890-20130614|9966_1 77 YFRLAVALRALKRYKEAVDNI 97
                778888888888888887655 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 4.7
   PF13424.1  12 alvlrrlgdydeAlelyekale 33 
                 a+ l + g++ e+l+ + + l+
  MMETSP0890-20130614|9966_1 133 ADELAQNGEFAECLKTIDRGLA 154
                 5556778888888888877776 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0067
   PF13424.1  13 lvlrrlgdydeAlelyekalellrelgdd.hpdtaralnnlanlylalgdyd 63 
                 ++ ++  d++ A++ y ++l+ l    d  +   ++al n a +y +l ++d
  MMETSP0890-20130614|9966_1 195 DTKYKNADFEGAISAYSRCLNDL---SDKsSELALKALANRAACYKQLSNFD 243
                 56677889999999999999886...34303444699999999999988876 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0022
   PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtar 47 
                   ++l + a++l++ ++y++Al+  +++l++ ++ +g ++  +a+
  MMETSP0890-20130614|9966_1 259 NVKSLVRRAQALEAVERYKSALQDVKTVLAMpAKDVGQANWTLAN 303
                 55678899***********************99999987766665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.1   7.9e+02      15      33 ..      20      39 ..      16      40 .. 0.79
   2 ?    2.0   0.0      0.27     2e+02       4      23 ..      43      62 ..      41      73 .. 0.77
   3 !    6.5   0.0    0.0098       7.1       2      21 ..      75      94 ..      74      98 .. 0.90
   4 ?   -0.2   0.0       1.4   9.8e+02       4      22 ..     129     147 ..     126     159 .. 0.76
   5 ?    1.1   0.1      0.51   3.7e+02       8      28 ..     194     214 ..     192     215 .. 0.86
   6 ?    6.2   0.0     0.012       8.6       2      34 .]     227     259 ..     226     260 .. 0.89
   7 ?   -0.7   0.0         2   1.5e+03       2      23 ..     261     282 ..     260     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.1
                T-HHHHHHHHH---HHHH.. CS
   PF13181.1 15 GdydkAkeylekalelkp.r 33
                G++ +A++ +  a+el+p +
  MMETSP0890-20130614|9966_1 20 GKHVEAIAKYSAAIELDPtD 39
                677788888999*****955 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.27
                TTT---HHHHTT-HHHHHHH CS
   PF13181.1  4 yynlGdiYrqlGdydkAkey 23
                y n++ +Y+ l +++++ e 
  MMETSP0890-20130614|9966_1 43 YSNRAAAYAALEKWEESAED 62
                6688999*******999875 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0098
                --TTT---HHHHTT-HHHHH CS
   PF13181.1  2 kayynlGdiYrqlGdydkAk 21
                k y++l+ ++r l++y++A 
  MMETSP0890-20130614|9966_1 75 KGYFRLAVALRALKRYKEAV 94
                67****************97 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 1.4
                 TTT---HHHHTT-HHHHHH CS
   PF13181.1   4 yynlGdiYrqlGdydkAke 22 
                  ++++d ++q+G++ + ++
  MMETSP0890-20130614|9966_1 129 ITEKADELAQNGEFAECLK 147
                 5678999999999988766 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.51
                 --HHHHTT-HHHHHHHHH--- CS
   PF13181.1   8 GdiYrqlGdydkAkeylekal 28 
                 Gd+  ++ d++ A++++ ++l
  MMETSP0890-20130614|9966_1 194 GDTKYKNADFEGAISAYSRCL 214
                 677788899********9987 PP

  == domain 6    score: 6.2 bits;  conditional E-value: 0.012
                 --TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkprn 34 
                 ka+ n++ +Y+ql ++d  +e    +le +p+n
  MMETSP0890-20130614|9966_1 227 KALANRAACYKQLSNFDGTIEDCTAVLEVDPDN 259
                 6899*************9999999999999954 PP

  == domain 7    score: -0.7 bits;  conditional E-value: 2
                 --TTT---HHHHTT-HHHHHHH CS
   PF13181.1   2 kayynlGdiYrqlGdydkAkey 23 
                 k++ +++++++   +y++A++ 
  MMETSP0890-20130614|9966_1 261 KSLVRRAQALEAVERYKSALQD 282
                 5688999999999999999875 PP

>> PF04781.7  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.7   1.9e+03       4      16 ..      14      26 ..      11      33 .. 0.85
   2 ?    5.4   0.0     0.017        12      72     107 ..      68     103 ..      27     107 .. 0.82
   3 ?   -1.7   0.0       2.6   1.9e+03      71     105 ..     119     153 ..     113     157 .. 0.65
   4 ?    7.2   0.1    0.0047       3.4      68     107 ..     250     289 ..     189     294 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.7
   PF04781.7  4 rdlfakgdyikAL 16
                +++f+ g +++A+
  MMETSP0890-20130614|9966_1 14 NKFFQGGKHVEAI 26
                789999****998 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.017
   PF04781.7  72 llsslaAlsLfelakelgsvkyYkkavkkakeaLsv 107
                 ++ ++  ++ f la  l+  k Yk+av + k +L v
  MMETSP0890-20130614|9966_1  68 RVKKDFIKGYFRLAVALRALKRYKEAVDNIKMGLAV 103
                 44455588999********************99987 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.6
   PF04781.7  71 vllsslaAlsLfelakelgsvkyYkkavkkakeaL 105
                 + + +  ++++ e a+el  + ++ +++k   ++L
  MMETSP0890-20130614|9966_1 119 EIMRQEKVKAITEKADELAQNGEFAECLKTIDRGL 153
                 44455556677777777777777777777766665 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0047
   PF04781.7  68 seavllsslaAlsLfelakelgsvkyYkkavkkakeaLsv 107
                 +   ++ ++ ++sL+  a+ l+ v  Yk a++  k  L +
  MMETSP0890-20130614|9966_1 250 TAVLEVDPDNVKSLVRRAQALEAVERYKSALQDVKTVLAM 289
                 4444556666***********************9999876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15   1.1e+02      35      77 ..      16      59 ..      12      62 .. 0.80
   2 ?    3.5   0.1     0.099        72      31      79 ..      80      95 ..      65     152 .. 0.79
   3 ?    1.1   0.0      0.53   3.8e+02      31      57 ..     132     159 ..     104     175 .. 0.76
   4 ?    8.4   0.9    0.0029       2.1      14      79 ..     212     281 ..     199     286 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.15
                HHH---HHHHHHHHHC.TSHCHCBHHHHHHH.HHHHHHTT-HHHH CS
   PF12895.2 35 lylngeykrAyellrk.leldssslgcryll.ArcllklgkydeA 77
                +++ g++ +A+  ++   eld++ ++  y   A ++ +l+k++e 
  MMETSP0890-20130614|9966_1 16 FFQGGKHVEAIAKYSAaIELDPTDVTF-YSNrAAAYAALEKWEES 59
                689999999999997788898888544.44459999999999996 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.099
                HHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHHHHHHHHTT-HHHHCC CS
   PF12895.2 31 lAlclylngeykrAyellrkleldssslgcryllArcllklgkydeAia 79
                l                                 A +l +l++y+eA +
  MMETSP0890-20130614|9966_1 80 L---------------------------------AVALRALKRYKEAVD 95
                3.................................445555666666654 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.53
                 HHHHHHH---HHHHHHHHHC.TSHCHCB CS
   PF12895.2  31 lAlclylngeykrAyellrk.leldsss 57 
                 +A  l +nge+ ++++ +++ l ld  +
  MMETSP0890-20130614|9966_1 132 KADELAQNGEFAECLKTIDRgLALDGGN 159
                 6677889999999999998886666554 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.0029
                 HHCCC-ST-H.HHH..CHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCC CS
   PF12895.2  14 kllaespkdp.eda..ylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAia 79 
                 + l   + ++ e a  +l + A c+ ++ +++ ++e ++  le+d+ ++++ +  A++l++ ++y+ A++
  MMETSP0890-20130614|9966_1 212 RCLNDLSDKSsELAlkALANRAACYKQLSNFDGTIEDCTAvLEVDPDNVKSLVRRAQALEAVERYKSALQ 281
                 444444322122224478889*****************889*******9999889************986 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.019        14      73     113 ..      17      57 ..       2      66 .. 0.83
   2 ?    4.3   0.0     0.055        40     102     137 ..      73     108 ..      68     117 .. 0.82
   3 ?    1.9   0.1      0.31   2.2e+02      10      65 ..     130     184 ..     123     191 .. 0.81
   4 ?    2.0   0.5      0.28     2e+02      59     117 ..     223     281 ..     187     295 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.019
  PF03704.12  73 lrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqa 113
                 ++ g+h e++a+++a+++l+P++ +++     A++++++ +
  MMETSP0890-20130614|9966_1  17 FQGGKHVEAIAKYSAAIELDPTDVTFYSNRAAAYAALEKWE 57 
                 56799**********************99999999988765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.055
  PF03704.12 102 lmrAlyrsGrqaeALevYrrlrrrLaeeLGvePgpe 137
                 +++ ++r+     AL+ Y+++ +  +  L v+Pg +
  MMETSP0890-20130614|9966_1  73 FIKGYFRLAVALRALKRYKEAVDNIKMGLAVDPGNA 108
                 567778888888999999999999999999999864 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.31
  PF03704.12  10 vaagrralaagdpeeaarlleaalalwrGp.aladvragpwleaererleelrleal 65 
                 ++++++++++g+++e ++++++ lal  G+  l+++++  +++++ ++ e++rl+ l
  MMETSP0890-20130614|9966_1 130 TEKADELAQNGEFAECLKTIDRGLALDGGNkQLSGLKS--RIQPKFQAAEQRRLKSL 184
                 566788899999*************9998536888777..99999999999998876 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.28
  PF03704.12  59 elrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALe 117
                 el l+al+ ++++  +l + +  +++ +a ++ +P + +   +  +Al +++r + AL+
  MMETSP0890-20130614|9966_1 223 ELALKALANRAACYKQLSNFDGTIEDCTAVLEVDPDNVKSLVRRAQALEAVERYKSALQ 281
                 55556666666666666666666666666666555555555555555555555555554 PP

>> PF12968.2  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.31   2.2e+02       8      38 ..       5      35 ..       2      55 .. 0.82
   2 ?    4.2   0.0     0.044        32      97     126 ..      71     100 ..      39     110 .. 0.87
   3 ?    1.2   0.0      0.38   2.7e+02      62      82 ..     133     153 ..     115     157 .. 0.75
   4 ?    1.9   0.1      0.22   1.6e+02       7      63 ..     185     241 ..     179     259 .. 0.72
   5 ?    5.8   0.0     0.013       9.7     100     132 ..     260     292 ..     254     299 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.31
   PF12968.2  8 eaylalseaekkleegayeeaaascrkamev 38
                +a +   e++k +++g++ ea a+++ a+e+
  MMETSP0890-20130614|9966_1  5 QAQALKKEGNKFFQGGKHVEAIAKYSAAIEL 35
                5555567889999999999999999999987 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.044
   PF12968.2  97 klWiaavfsravaleelGrkeealkefrka 126
                 k +i+  f+ aval +l r +ea+ +++++
  MMETSP0890-20130614|9966_1  71 KDFIKGYFRLAVALRALKRYKEAVDNIKMG 100
                 557888889999999999999999998885 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.38
   PF12968.2  62 sealaklgrydealesaekal 82 
                 ++ la+ g++ e+l++++++l
  MMETSP0890-20130614|9966_1 133 ADELAQNGEFAECLKTIDRGL 153
                 445667788888888888877 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.22
   PF12968.2   7 aeaylalseaekkleegayeeaaascrkamevsrtipaeeafdheGfdalchavlse 63 
                 ++   a  e++ k++++ +e a   +++ ++     ++e a+      a c+ +ls+
  MMETSP0890-20130614|9966_1 185 SKPERAKEEGDTKYKNADFEGAISAYSRCLNDLSDKSSELALKALANRAACYKQLSN 241
                 555566678888899999999999888888777777777777777777777777776 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.013
   PF12968.2 100 iaavfsravaleelGrkeealkefrkagemiae 132
                 ++ +++ra+ale++ r + al+  +++  m a 
  MMETSP0890-20130614|9966_1 260 VKSLVRRAQALEAVERYKSALQDVKTVLAMPAK 292
                 567899******************999888665 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0086       6.2      49      74 ..     116     143 ..      87     152 .. 0.81
   2 ?    2.4   0.0      0.24   1.7e+02      19      68 ..     171     226 ..     158     241 .. 0.71
   3 ?    2.0   0.0       0.3   2.2e+02      21      48 ..     250     272 ..     231     318 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0086
                 HHHH..HHHHHHHHHHHHHHHHHTTSTT CS
  PF00435.16  49 elaa..qqervealnelaeklideghsa 74 
                 e+++  +qe+v+a++e a++l+++g++a
  MMETSP0890-20130614|9966_1 116 EMEEimRQEKVKAITEKADELAQNGEFA 143
                 33333389*************9999776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.24
                 HHHHHHHCCCHSSSHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHH.H CS
  PF00435.16  19 ekeellssedlgkdleevqallk......khkaleaelaaqqervealnelaekl.i 68 
                  k + ++++   k+l++ ++  +      k  ++e  ++a+ + +++l + +++l +
  MMETSP0890-20130614|9966_1 171 PKFQAAEQR-RLKSLSKPERAKEegdtkyKNADFEGAISAYSRCLNDLSDKSSELaL 226
                 555555333.33666666666666777778899**************9988888744 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.3
                 HHHHHCCCHSSSHHHHHHHHHHHHHHHH CS
  PF00435.16  21 eellssedlgkdleevqallkkhkalea 48 
                  + l     + d+++v++l+++ +alea
  MMETSP0890-20130614|9966_1 250 TAVL-----EVDPDNVKSLVRRAQALEA 272
                 4444.....5577788888887777765 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.41     3e+02      11      32 ..      17      38 ..       4      39 .. 0.78
   2 ?    5.8   0.1     0.027        19       2      21 ..      76      95 ..      75      98 .. 0.91
   3 ?    3.0   0.0       0.2   1.5e+02      10      28 ..     197     215 ..     193     219 .. 0.82
   4 ?    2.9   0.0      0.22   1.6e+02       2      32 ..     228     258 ..     227     259 .. 0.86
   5 ?   -1.1   0.1       4.4   3.2e+03       5      19 ..     265     279 ..     261     283 .. 0.48

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.41
                HHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1 11 yklgdtdeAlealerlikeyPd 32
                +++g++ eA++ +   i+  P+
  MMETSP0890-20130614|9966_1 17 FQGGKHVEAIAKYSAAIELDPT 38
                4558999******999998885 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.027
                HHHHHHHHHHHHHHHHHHHH CS
   PF13174.1  2 AlyklalsyyklgdtdeAle 21
                 +++la ++++l+++ eA++
  MMETSP0890-20130614|9966_1 76 GYFRLAVALRALKRYKEAVD 95
                58*********99*****86 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.2
                 HHH.HHHHHHHHHHHHHHHH CS
   PF13174.1  10 yyk.lgdtdeAlealerlik 28 
                  yk + d++ A+ a+ r+++
  MMETSP0890-20130614|9966_1 197 KYKnA-DFEGAISAYSRCLN 215
                 57735.**********9987 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
   PF13174.1   2 AlyklalsyyklgdtdeAlealerlikeyPd 32 
                 Al ++a +y++l ++d  +e    +++  Pd
  MMETSP0890-20130614|9966_1 228 ALANRAACYKQLSNFDGTIEDCTAVLEVDPD 258
                 8999*******99***999988888887777 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 4.4
                 HHHHHHHH.HHHHHHH CS
   PF13174.1   5 klalsyyk.lgdtdeA 19 
                 ++a+++++   ++  A
  MMETSP0890-20130614|9966_1 265 RRAQALEAvE-RYKSA 279
                 5555555433.44444 PP

>> PF09403.5  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.0       1.1   8.1e+02      31      54 ..     112     135 ..     103     154 .. 0.56
   2 ?   12.4   0.1   0.00014       0.1      54     109 ..     166     221 ..     158     231 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.1
   PF09403.5  31 aleaeYqdLvkkeeaRfeeekeek 54 
                     e ++++++e+ +   ek+++
  MMETSP0890-20130614|9966_1 112 KQASEMEEIMRQEKVKAITEKADE 135
                 444455555555554444444432 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00014
   PF09403.5  54 keaaekevaklkelkaeleeklaklkeesktrfykdeykkLlkkyeeylkkleeki 109
                 k +++ + +  ++++++   k  ++kee +t++   ++++ ++ y+  l+ l +k 
  MMETSP0890-20130614|9966_1 166 KSRIQPKFQAAEQRRLKSLSKPERAKEEGDTKYKNADFEGAISAYSRCLNDLSDKS 221
                 56777788899999999999*******************************99885 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.35   2.5e+02      12      33 ..       8      34 ..       5      35 .. 0.68
   2 ?    9.0   0.3    0.0015       1.1      23      60 ..      85     122 ..      83     139 .. 0.72
   3 ?    1.2   0.1      0.44   3.1e+02      18      35 ..     200     217 ..     182     230 .. 0.78
   4 ?    4.7   0.1     0.034        24      20      61 ..     268     311 ..     259     317 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.35
                HHHHHHTT.....-HHHHHHHHHHHHH CS
  PF04212.13 12 AveaDeag.....kyeeAlelYkeAle 33
                A++++ ++     k+ eA+  Y  A+e
  MMETSP0890-20130614|9966_1  8 ALKKEGNKffqggKHVEAIAKYSAAIE 34
                666666333333499999999999998 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHHHH CS
  PF04212.13  23 eAlelYkeAlelLlqalkyepnperrealrqkieeylk 60 
                  Al+ YkeA++    +l+++p+ ++ +   +++ee + 
  MMETSP0890-20130614|9966_1  85 RALKRYKEAVDNIKMGLAVDPGNADLKKQASEMEEIMR 122
                 59******************666665555555555543 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.44
                 TT-HHHHHHHHHHHHHHH CS
  PF04212.13  18 agkyeeAlelYkeAlelL 35 
                 + ++e A+ +Y  +l+ L
  MMETSP0890-20130614|9966_1 200 NADFEGAISAYSRCLNDL 217
                 559999*****9988755 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.034
                 -HHHHHHHHHHHHHHHHHHHHHCTTHHCHHH..HHHHHHHHHHH CS
  PF04212.13  20 kyeeAlelYkeAlelLlqalkyepnperrea..lrqkieeylkr 61 
                 +  eA+e Yk+Al+   ++l+ + ++  +    l  +++  l+r
  MMETSP0890-20130614|9966_1 268 QALEAVERYKSALQDVKTVLAMPAKDVGQANwtLANQMQHRLNR 311
                 56689999999999888888877444333333566666666665 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.24   1.7e+02       5      23 ..      43      61 ..      41      71 .. 0.82
   2 ?    6.0   0.1     0.014        10       8      23 ..      80      95 ..      79      96 .. 0.93
   3 ?   -2.2   0.1       5.6     4e+03      11      22 ..     269     280 ..     265     289 .. 0.52

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.24
   PF13374.1  5 lnnLAlalrargryeeAla 23
                ++n A a++a+ ++ee  +
  MMETSP0890-20130614|9966_1 43 YSNRAAAYAALEKWEESAE 61
                6899***********9865 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.014
   PF13374.1  8 LAlalrargryeeAla 23
                LA+alra++ry eA++
  MMETSP0890-20130614|9966_1 80 LAVALRALKRYKEAVD 95
                9*************75 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 5.6
   PF13374.1  11 alrargryeeAl 22 
                 al a  ry  Al
  MMETSP0890-20130614|9966_1 269 ALEAVERYKSAL 280
                 444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       911  (0.0666325); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.99
# Mc/sec: 774.58
//
Query:       MMETSP0890-20130614|10020_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-30  103.7   0.0    4.1e-24   84.2   0.0    2.8  3  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    1.7e-13   49.9   5.3    4.3e-09   35.7   0.6    2.3  2  PF13414.1  TPR repeat
    2.6e-11   42.4   3.9     0.0012   18.4   0.2    3.5  3  PF07719.12 Tetratricopeptide repeat
      1e-07   31.1   1.3      0.031   13.7   0.1    3.6  3  PF00515.23 Tetratricopeptide repeat
    2.9e-07   30.3   2.4     0.0034   17.7   0.2    3.4  3  PF13428.1  Tetratricopeptide repeat
      1e-05   25.2   1.5      0.037   13.7   0.0    3.3  3  PF13371.1  Tetratricopeptide repeat
    4.9e-05   23.7   7.3      0.063   13.8   0.4    3.1  3  PF13432.1  Tetratricopeptide repeat
    6.7e-05   22.6   2.0     0.0075   16.2   0.0    3.9  4  PF13431.1  Tetratricopeptide repeat
    0.00024   20.5   1.0      0.023   14.3   0.1    3.3  3  PF13181.1  Tetratricopeptide repeat
    0.00038   20.6   4.3      0.027   14.7   0.1    3.7  3  PF13174.1  Tetratricopeptide repeat
     0.0035   16.9   1.8       0.21   11.3   0.1    2.8  3  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   14.1   3.7        1.2    9.0   0.5    2.6  2  PF13424.1  Tetratricopeptide repeat
      0.048   13.6   4.0        0.2   11.7   0.2    2.3  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.077   13.1   0.3        1.3    9.2   0.2    2.1  1  PF03704.12 Bacterial transcriptional activator domain


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   4.2e-27   4.1e-24       5      94 .]      34     122 ..      30     122 .. 0.96
   2 ?   -2.8   0.0       6.1     6e+03      31      44 ..     201     214 ..     187     238 .. 0.65
   3 !   16.5   0.0   5.9e-06    0.0058      46      79 ..     306     347 ..     253     376 .. 0.66

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 4.2e-27
                  --CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23   5 akegdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  +++g++V+vhy+g+l+ +g+ fdss +r+kpfef+vG + vi g+ +++ +m  Gek ++++ p+ aYg  g  ++ ip+na l fe+ell
  MMETSP0890-20130614|10020_1  34 PEKGNKVKVHYVGTLTkNGSQFDSSLNRGKPFEFIVG-TGVIDGWSQAIPTMLIGEKSKFRLAPSVAYGVDGQ-PPSIPSNAWLDFEIELL 122
                  789************999*******************.57*****************************9999.889************96 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.1
                  TTCEEEEECCTTSS CS
   PF00254.23  31 rakpfefkvGsgqv 44 
                   ++ ++f++G+++ 
  MMETSP0890-20130614|10020_1 201 MNEFANFRLGQKKC 214
                  45677888888874 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 5.9e-06
                  H........HHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTT CS
   PF00254.23  46 k........gleeglegmkvGekrtltippelaYgekglagg 79 
                           g++ +l++mk  e +t++i  e++Y+    +++
  MMETSP0890-20130614|10020_1 306 GdciyplcdGIDAALKKMKCHEVATVKISAEYGYKHAPTRKA 347
                  255555555*************************98655443 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.6   4.4e-12   4.3e-09       7      69 .]     400     476 ..     395     476 .. 0.85
   2 !   24.5   0.2   1.4e-08   1.3e-05      15      69 .]     457     510 ..     456     510 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 4.4e-12
    PF13414.1   7 kelGnalfkegdydeAieayekAleldpnnae...............lyynlAlaylklgkdyeeAledyekAleldP 69 
                  +elGn +f++gdy  A + y+ A++l  ++ +               + +n+A++ lklg d+  A   ++ +le dP
  MMETSP0890-20130614|10020_1 400 RELGNLAFSKGDYTRAARRYDAAIQLGRSDYDiddadkpnlhaainaARCNRAACSLKLG-DFSHACSFASDVLEQDP 476
                  89************************5444333444466677789***************.799**999999999988 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 1.4e-08
    PF13414.1  15 kegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  k+gd+  A+ + +  le dp na++++++A+ay  l +++ +A +d+++ l+ dP
  MMETSP0890-20130614|10020_1 457 KLGDFSHACSFASDVLEQDPTNAKALFRRAKAYTAL-DEWSKAKADLKLLLSSDP 510
                  789********************************9.5789*********99998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   8.9e-05     0.086       6      30 ..     401     425 ..     399     429 .. 0.93
   2 !   10.8   0.0   0.00033      0.32       3      34 .]     447     478 ..     445     478 .. 0.94
   3 !   18.4   0.2   1.3e-06    0.0012       1      34 []     479     512 ..     479     512 .. 0.98

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.9e-05
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAlel 30 
                  +lG++++ +gdy +A++ ++ A++l
  MMETSP0890-20130614|10020_1 401 ELGNLAFSKGDYTRAARRYDAAIQL 425
                  69*********************98 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00033
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  a +n++ + +klgd+  A  +   +le dP+n
  MMETSP0890-20130614|10020_1 447 ARCNRAACSLKLGDFSHACSFASDVLEQDPTN 478
                  5689**************************98 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 1.3e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+al+++++ay +l+++ +A+++++  l+ dPnn
  MMETSP0890-20130614|10020_1 479 AKALFRRAKAYTALDEWSKAKADLKLLLSSDPNN 512
                  79******************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0054       5.3       7      30 ..     402     425 ..     400     429 .. 0.90
   2 !    7.8   0.0    0.0024       2.4       3      34 .]     447     478 ..     446     478 .. 0.85
   3 !   13.7   0.1   3.2e-05     0.031       1      34 []     479     512 ..     479     512 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0054
                  HHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyyekALel 30 
                  lGn+ +++g+y  A   y+ A++l
  MMETSP0890-20130614|10020_1 402 LGNLAFSKGDYTRAARRYDAAIQL 425
                  9*************9999999987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0024
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPnn 34 
                  a +n++++ lklg++  A  + + +Le +P+n
  MMETSP0890-20130614|10020_1 447 ARCNRAACSLKLGDFSHACSFASDVLEQDPTN 478
                  789************99977777777777776 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 3.2e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                  akal++++ ay  l ++ +A ++ +  L+ +Pnn
  MMETSP0890-20130614|10020_1 479 AKALFRRAKAYTALDEWSKAKADLKLLLSSDPNN 512
                  89**********************9999999997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0047       4.6       6      34 ..     401     429 ..     399     435 .. 0.88
   2 !    8.7   0.0    0.0029       2.8       7      43 ..     451     487 ..     445     488 .. 0.86
   3 !   17.7   0.2   3.5e-06    0.0034       2      43 ..     480     521 ..     479     522 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0047
    PF13428.1   6 alarallalGdpdeAiallrralalaPdd 34 
                  +l+++ +  Gd+ +A++ +++a++l+ +d
  MMETSP0890-20130614|10020_1 401 ELGNLAFSKGDYTRAARRYDAAIQLGRSD 429
                  68999999****************98876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0029
    PF13428.1   7 larallalGdpdeAiallrralalaPddaealllLar 43 
                  +a+  l lGd+  A   + ++l+++P++a al++ a+
  MMETSP0890-20130614|10020_1 451 RAACSLKLGDFSHACSFASDVLEQDPTNAKALFRRAK 487
                  66667889************************99987 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 3.5e-06
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLar 43 
                  +al ++a a+ al ++ +A a l+ +l+ +P++ +a + La+
  MMETSP0890-20130614|10020_1 480 KALFRRAKAYTALDEWSKAKADLKLLLSSDPNNSDAKRVLAE 521
                  7999************************************97 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.027        26      28      65 ..     395     432 ..     392     445 .. 0.83
   2 !    6.3   0.0    0.0077       7.5      32      65 ..     448     481 ..     440     487 .. 0.88
   3 !   13.7   0.0   3.7e-05     0.037      25      70 ..     475     520 ..     472     522 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.027
    PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcpdapda 65 
                  ++   R+ G l +  g+++ Aa+ ++a+++l +++ d+
  MMETSP0890-20130614|10020_1 395 AVNKKRELGNLAFSKGDYTRAARRYDAAIQLGRSDYDI 432
                  566789***********************999965554 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0077
    PF13371.1  32 rRDrGlllaqlgclaaAaedLeaflelcpdapda 65 
                  r  r+ +  +lg+++ A+   +  le++p+   a
  MMETSP0890-20130614|10020_1 448 RCNRAACSLKLGDFSHACSFASDVLEQDPTNAKA 481
                  668**************************87766 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 3.7e-05
    PF13371.1  25 aPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelira 70 
                  +P  +  +  r+ ++  l++++ A +dL   l ++p+ +da ++ a
  MMETSP0890-20130614|10020_1 475 DPTNAKALFRRAKAYTALDEWSKAKADLKLLLSSDPNNSDAKRVLA 520
                  5666777778999*****************************9987 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.5   0.00035      0.35       2      30 ..     401     429 ..     400     453 .. 0.81
   2 !   10.3   0.1   0.00084      0.82      18      64 ..     466     512 ..     449     513 .. 0.86
   3 !   13.8   0.4   6.4e-05     0.063       1      54 [.     483     537 ..     483     539 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00035
    PF13432.1   2 alArallraGdydeAlaaleaalalaPea 30 
                  +l+++++  Gdy +A++ ++aa+ l   +
  MMETSP0890-20130614|10020_1 401 ELGNLAFSKGDYTRAARRYDAAIQLGRSD 429
                  57889999999999999999998877444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00084
    PF13432.1  18 aaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                     +++l+++P +a al+++a a+ +l ++ +A a l+ +l+ +P++
  MMETSP0890-20130614|10020_1 466 SFASDVLEQDPTNAKALFRRAKAYTALDEWSKAKADLKLLLSSDPNN 512
                  566899****************************9999999999987 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 6.4e-05
    PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.all 54 
                  +++A+a+ ++ ++ +A a l+ +l  +P + +a+  lae+  r++ + ++  +l+
  MMETSP0890-20130614|10020_1 483 FRRAKAYTALDEWSKAKADLKLLLSSDPNNSDAKRVLAEIVKRQKAYNDEQkKLY 537
                  578999999999***********************************99987776 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.81   7.9e+02      18      32 ..     401     415 ..     400     418 .. 0.86
   2 ?   -1.9   0.0       4.8   4.7e+03      15      29 ..     447     461 ..     446     464 .. 0.85
   3 !   16.2   0.0   7.7e-06    0.0075       5      33 ..     471     499 ..     467     500 .. 0.92
   4 ?    2.1   0.0      0.26   2.5e+02       6      22 ..     506     522 ..     502     534 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.81
    PF13431.1  18 nLAelllnnGdleeA 32 
                  +L++l +++Gd+ +A
  MMETSP0890-20130614|10020_1 401 ELGNLAFSKGDYTRA 415
                  69*********9877 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 4.8
    PF13431.1  15 aynnLAelllnnGdl 29 
                  a++n+A + l++Gd+
  MMETSP0890-20130614|10020_1 447 ARCNRAACSLKLGDF 461
                  789*****9999996 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 7.7e-06
    PF13431.1   5 aleldPnnadaynnLAelllnnGdleeAe 33 
                   le+dP+na a++++A+++ ++ ++ +A+
  MMETSP0890-20130614|10020_1 471 VLEQDPTNAKALFRRAKAYTALDEWSKAK 499
                  69*********************999997 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.26
    PF13431.1   6 leldPnnadaynnLAel 22 
                  l  dPnn+da + LAe+
  MMETSP0890-20130614|10020_1 506 LSSDPNNSDAKRVLAEI 522
                  5569******9988887 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.16   1.6e+02       6      30 ..     401     425 ..     400     430 .. 0.78
   2 ?   -0.5   0.0       1.2   1.2e+03       3      32 ..     447     476 ..     445     478 .. 0.76
   3 !   14.3   0.1   2.4e-05     0.023       1      34 []     479     512 ..     479     512 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.16
                  T---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   6 nlGdiYrqlGdydkAkeylekalel 30 
                  +lG + +++Gdy  A   +  a++l
  MMETSP0890-20130614|10020_1 401 ELGNLAFSKGDYTRAARRYDAAIQL 425
                  689999******9998777766666 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.2
                  -TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                  a++n++ + ++lGd++ A ++   +le +p
  MMETSP0890-20130614|10020_1 447 ARCNRAACSLKLGDFSHACSFASDVLEQDP 476
                  6788999999*****999877666666555 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 2.4e-05
                  ---TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkprn 34 
                  aka+++++++Y  l +++kAk+ l+  l+ +p+n
  MMETSP0890-20130614|10020_1 479 AKALFRRAKAYTALDEWSKAKADLKLLLSSDPNN 512
                  689*****************************75 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.11   1.1e+02       6      28 ..     402     424 ..     400     425 .. 0.86
   2 ?    1.6   0.0      0.44   4.3e+02       6      32 ..     451     477 ..     445     478 .. 0.83
   3 !   14.7   0.1   2.8e-05     0.027       2      33 .]     481     512 ..     480     512 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAlealerlik 28 
                  l+ + +  gd+++A + ++  i+
  MMETSP0890-20130614|10020_1 402 LGNLAFSKGDYTRAARRYDAAIQ 424
                  788899988********999886 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.44
                  HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1   6 lalsyyklgdtdeAlealerlikeyPd 32 
                  +a + +klgd++ A+    +++++ P+
  MMETSP0890-20130614|10020_1 451 RAACSLKLGDFSHACSFASDVLEQDPT 477
                  566777779**************9996 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 2.8e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealerlikeyPdS 33 
                  Al+++a++y +l+++++A++ l+ l+++ P++
  MMETSP0890-20130614|10020_1 481 ALFRRAKAYTALDEWSKAKADLKLLLSSDPNN 512
                  9**********99****************995 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00022      0.21       5      35 ..     402     432 ..     400     433 .. 0.91
   2 ?   -2.6   0.0       6.2     6e+03       6      21 ..     452     467 ..     447     479 .. 0.67
   3 ?    3.9   0.0     0.049        48       1      33 [.     481     511 ..     481     514 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00022
    PF13176.1   5 LarlysrlgdyekAielyeraLaltkdplda 35 
                  L++l ++ gdy +A++ y +a++l ++++d+
  MMETSP0890-20130614|10020_1 402 LGNLAFSKGDYTRAARRYDAAIQLGRSDYDI 432
                  99******************99999999875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6.2
    PF13176.1   6 arlysrlgdyekAiel 21 
                  a +  +lgd++ A ++
  MMETSP0890-20130614|10020_1 452 AACSLKLGDFSHACSF 467
                  5555678999877665 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.049
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpl 33 
                  al++ a++y++l +++kA   ++    l +dp+
  MMETSP0890-20130614|10020_1 481 ALFRRAKAYTALDEWSKAKADLKL--LLSSDPN 511
                  68899*************877777..6666655 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5    0.0012       1.2      10      55 ..     401     449 ..     399     474 .. 0.70
   2 ?    6.2   0.4     0.009       8.8       4      69 ..     444     502 ..     437     508 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0012
    PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdt..aralnnlanl 55 
                  +l+++ + +gdy +A   y  a++l ++ +  d++d   + a  n a++
  MMETSP0890-20130614|10020_1 401 ELGNLAFSKGDYTRAARRYDAAIQLgRSDYDIDDADKpnLHAAINAARC 449
                  68999999****************9888875443333003334444444 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.009
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                  ++++ +n a + ++lgd+  A ++   +le        +p  a+al+  a +y al + ++A++ l
  MMETSP0890-20130614|10020_1 444 INAARCNRAACSLKLGDFSHACSFASDVLEQ-------DPTNAKALFRRAKAYTALDEWSKAKADL 502
                  5566778888888999999999998887755.......3444899999999999999999998765 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4      0.06        58      33      77 ..     404     464 ..     387     467 .. 0.56
   2 ?   10.9   2.0   0.00035      0.34       4      80 ..     418     501 ..     409     508 .. 0.77
   3 ?   11.7   0.2    0.0002       0.2       4      75 ..     460     530 ..     457     531 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.06
                  HHHHH---HHHHHHHHHC...........TSHCHCBHHHHH....HH.HHHHHHTT-HHHH CS
    PF12895.2  33 lclylngeykrAyellrk...........leldssslgcry....ll.ArcllklgkydeA 77 
                  +  ++ g+y+rA   ++             + d+ +l++++       A c lklg+++ A
  MMETSP0890-20130614|10020_1 404 NLAFSKGDYTRAARRYDAaiqlgrsdydiDDADKPNLHAAInaarCNrAACSLKLGDFSHA 464
                  4455555555554444334444444888855555554444422225557889999888776 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00035
                  -HHHHHHHHHHHCCC-ST.-H.....HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCC CS
    PF12895.2   4 nyknAlflaekllaespk.dp.....edaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiav 80 
                  +y+ A+ l++  +  ++  +p      +a+  + A c +++g++  A+ + ++ le+d++++++ +  A+++ +l+++++A a 
  MMETSP0890-20130614|10020_1 418 RYDAAIQLGRSDYDIDDAdKPnlhaaINAARCNRAACSLKLGDFSHACSFASDvLEQDPTNAKALFRRAKAYTALDEWSKAKAD 501
                  5666777777666666664113322233366679*****************999*******9999999************9765 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.0002
                  -HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HH CS
    PF12895.2   4 nyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkyd 75 
                  +++ A  +a  +l+++p  +++ +l++ A+++  + e+ +A   l+  l  d+++ +++ +lA+    ++ y+
  MMETSP0890-20130614|10020_1 460 DFSHACSFASDVLEQDP--TNAKALFRRAKAYTALDEWSKAKADLKLlLSSDPNNSDAKRVLAEIVKRQKAYN 530
                  56779999999999998..479999****************99994477788888899999999988888887 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0013       1.3       7     111 ..     397     494 ..     393     521 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0013
   PF03704.12   7 erlvaagrralaagdpeeaarlleaalalwrGpaladvragpwleaererleelrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGr 111
                   ++ + g+ a+++gd ++aar+++aa++l r +   d  ++p l+a++++ + +r+++        l+lg+ + + + +++ ++++P++ ++  +  +A+ ++++
  MMETSP0890-20130614|10020_1 397 NKKRELGNLAFSKGDYTRAARRYDAAIQLGRSDYDIDDADKPNLHAAINAARCNRAACS-------LKLGDFSHACSFASDVLEQDPTNAKALFRRAKAYTALDE 494
                  5667778899999999************9999998887776666666666665555554.......555556666666666666666655554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.96
# Mc/sec: 1365.42
//
Query:       MMETSP0890-20130614|10035_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-21   75.6   0.2    4.9e-21   74.6   0.1    1.6  1  PF01965.19 DJ-1/PfpI family
    1.8e-15   56.0   0.1    2.9e-15   55.4   0.0    1.3  1  PF13587.1  N-terminal domain of DJ-1_PfpI family
     0.0019   17.4   0.0     0.0028   16.8   0.0    1.2  1  PF13278.1  Putative amidotransferase


Domain annotation for each model (and alignments):
>> PF01965.19  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.1   1.1e-24   4.9e-21      25     146 ..      93     241 ..      64     242 .] 0.83

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 1.1e-24
                  CTSEEGGG--GGGESEEEE----HHHHHHCT-.HHHHHHHHHHHH----EEEE----HHHHHHC-TT......--EE---GGGHH....................HHHHTT-EEHHHHCSCE.....EETT.EEEESSGGGHHHHHHHHHHHH CS
   PF01965.19  25 tadktledvnaddydalvlPGGhaaaedlradaeklvelvkefaaagkpiaaiChgpalLaaagllk......gkrvtgfpnvke....................dleeagaeyvdedalvv.....vdgnklvTsanpgsaeefakelleal 146
                  ++ +++ d++   +d++++ GG++ + d ++d + +++ +ke++ agk++aa+Chgpa + +  l +      gk++t+f+n++e                    +l++ g ++vd    v      v+g +l T++np sa ++a+++++ l
  MMETSP0890-20130614|10035_1  93 ESQAKFTDIDYMTFDCIFVVGGFGVLWDIAND-TTIKAALKEMYVAGKVVAAVCHGPACFFDLILDDgtplvaGKQITAFTNDEEnavgkyeivskpsgpgscedNLKALGCTFVDG--GVFqpqvcVAG-NLFTGQNPPSAGPLAEAVIKVL 241
                  5677888999999*****************77.************************77777666667999**************99999998888888777777777777777762..22123334666.7******************987 PP

>> PF13587.1  N-terminal domain of DJ-1_PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   6.3e-19   2.9e-15       1      38 []      15      51 ..      15      51 .. 0.98

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 6.3e-19
    PF13587.1  1 kkiLfVlTShdeLGdtGkkTGfwleElAhPYyvfadaG 38
                 kkiL+VlTS d   d G kTG++l+E+AhPYy f +aG
  MMETSP0890-20130614|10035_1 15 KKILMVLTSVDSYPD-GSKTGWYLPEAAHPYYKFVEAG 51
                 8**************.*********************9 PP

>> PF13278.1  Putative amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.2e-07    0.0028      51     103 ..      95     148 ..      87     159 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.2e-07
    PF13278.1  51 tadhpladaaeaDvllvpggpg.lqkeaadpallaqlqkldaegqllaavcsGa 103
                  +a  +  d + +D++ v+gg+g l ++a+d+++ a+l++ + +g+++aavc G 
  MMETSP0890-20130614|10035_1  95 QAKFTDIDYMTFDCIFVVGGFGvLWDIANDTTIKAALKEMYVAGKVVAAVCHGP 148
                  455566678899****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 794.41
//
Query:       MMETSP0890-20130614|10044_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.0   8.7    4.5e-08   32.4   1.5    2.6  3  PF13414.1  TPR repeat
    1.2e-07   30.9   6.5      0.028   14.1   0.0    3.5  3  PF07719.12 Tetratricopeptide repeat
    1.3e-07   30.7   2.4     0.0098   15.3   0.0    2.8  3  PF00515.23 Tetratricopeptide repeat
    6.3e-05   23.4   8.9     0.0096   16.4   0.7    2.6  2  PF13432.1  Tetratricopeptide repeat
     0.0005   19.7   1.2     0.0013   18.4   0.8    1.8  1  PF13371.1  Tetratricopeptide repeat
     0.0011   19.2  22.4     0.0026   18.0   6.9    2.4  2  PF07172.6  Glycine rich protein family
     0.0038   17.6   2.8        1.1    9.9   0.1    3.1  2  PF13428.1  Tetratricopeptide repeat
     0.0063   16.3   2.7     0.0083   15.9   1.0    1.8  1  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.9   5.7       0.02   14.8   1.0    3.0  3  PF12235.3  Fragile X-related 1 protein C terminal
       0.11   11.8   0.1       0.19   11.1   0.1    1.3  1  PF01956.11 Integral membrane protein DUF106
       0.17   11.6   6.1       0.11   12.2   0.6    3.2  4  PF13181.1  Tetratricopeptide repeat
        0.2   11.4   0.2        0.2   11.4   0.1    2.7  2  PF13176.1  Tetratricopeptide repeat
          1    7.7   3.3       0.57    8.6   0.9    1.5  2  PF04499.10 SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.5   4.3e-11   4.5e-08       5      69 .]     114     181 ..     110     181 .. 0.88
   2 !   16.4   0.4   4.4e-06    0.0047       3      65 ..     150     211 ..     149     217 .. 0.85
   3 ?   -3.6   0.3       7.9   8.3e+03       8      23 ..     252     267 ..     247     270 .. 0.60

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 4.3e-11
    PF13414.1   5 alkelGnalfkegdydeAieayekAleld....pnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  + k ++ a+ +eg+yd+A+++y +Ale +    + +a  ++ +A ++lkl +++ +A++d++ Al ++P
  MMETSP0890-20130614|10044_1 114 EKKSQASAAASEGNYDDALKFYGEALEAEavtaSLSATTLAKRADILLKL-DRPAAAVHDCDAALIINP 181
                  56889999*******************96333366788***********9.79************9998 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4.4e-06
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  A +l  ++  l+k+ +++ A+  ++ Al ++p++  ++  +++a ++lg  + +A  d+  A 
  MMETSP0890-20130614|10044_1 150 ATTLAKRADILLKLDRPAAAVHDCDAALIINPDSVRALKTRGKANRRLG-YWTKANLDLAAAQ 211
                  5567889999***************************************.6788866666664 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 7.9
    PF13414.1   8 elGnalfkegdydeAi 23 
                   +++++ k+ + +eA+
  MMETSP0890-20130614|10044_1 252 KAAEEHRKKMQQEEAE 267
                  4555666666666665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.6   4.8e-05     0.051       8      29 ..     119     140 ..     116     142 .. 0.89
   2 !   14.1   0.0   2.7e-05     0.028       3      33 ..     152     182 ..     150     183 .. 0.92
   3 ?    4.6   0.2     0.031        33       2      31 ..     185     214 ..     184     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.8e-05
                  HHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   8 GlayyklgdyeeAleafekAle 29 
                  + a++  g+y++Al+++ +Ale
  MMETSP0890-20130614|10044_1 119 ASAAASEGNYDDALKFYGEALE 140
                  6788999**************8 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.7e-05
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                   l  ++++++kl++++ A+++++ Al ++P+
  MMETSP0890-20130614|10044_1 152 TLAKRADILLKLDRPAAAVHDCDAALIINPD 182
                  6789**************************8 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.031
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  +al  +G+a ++lg + +A  ++  A  +d
  MMETSP0890-20130614|10044_1 185 RALKTRGKANRRLGYWTKANLDLAAAQNID 214
                  68999**************88888776665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   2.1e-05     0.022       8      29 ..     119     140 ..     116     142 .. 0.88
   2 !   15.3   0.0   9.3e-06    0.0098       3      33 ..     152     182 ..     150     183 .. 0.92
   3 ?   -3.1   0.0       6.1   6.4e+03       2      15 ..     185     198 ..     184     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-05
                  HHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23   8 GnaylklgkydeAleyyekALe 29 
                  + a  + g+yd+Al++y +ALe
  MMETSP0890-20130614|10044_1 119 ASAAASEGNYDDALKFYGEALE 140
                  5677899**************8 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 9.3e-06
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPn 33 
                  +l  ++ ++lkl ++  A+ +++ AL +nP+
  MMETSP0890-20130614|10044_1 152 TLAKRADILLKLDRPAAAVHDCDAALIINPD 182
                  677899************************8 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 6.1
                  HHHHHHHHHHHHTT CS
   PF00515.23   2 kalynlGnaylklg 15 
                  +al+ +G a ++lg
  MMETSP0890-20130614|10044_1 185 RALKTRGKANRRLG 198
                  78999999988776 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.5     1e-05     0.011       3      51 ..     118     170 ..     116     172 .. 0.92
   2 !   16.4   0.7   9.1e-06    0.0096       2      59 ..     155     211 ..     154     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1e-05
    PF13432.1   3 lArallraGdydeAlaaleaalala....PeaaeallllaeallrlgrldeAa 51 
                  +A a+   G+yd+Al+ + +al+++     + a  l  +a++ll+l r+++A+
  MMETSP0890-20130614|10044_1 118 QASAAASEGNYDDALKFYGEALEAEavtaSLSATTLAKRADILLKLDRPAAAV 170
                  899***************88888887**999********************96 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 9.1e-06
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraala 59 
                  ++A+ ll++ ++++A++  +aal  +P+ ++al  ++ a  rlg + +A   l+aa +
  MMETSP0890-20130614|10044_1 155 KRADILLKLDRPAAAVHDCDAALIINPDSVRALKTRGKANRRLGYWTKANLDLAAA-Q 211
                  6899****************************************999996333333.4 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.8   1.3e-06    0.0013       4      66 ..     159     221 ..     157     238 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.3e-06
    PF13371.1   4 iylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdae 66 
                  i+l  +++++A   ++  l+++Pd+++ +  rG +  +lg ++ A  dL a+ + + d++ ae
  MMETSP0890-20130614|10044_1 159 ILLKLDRPAAAVHDCDAALIINPDSVRALKTRGKANRRLGYWTKANLDLAAAQNIDYDPDLAE 221
                  6778899******************************************99986665555444 PP

>> PF07172.6  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   6.9   2.5e-06    0.0026      36      90 ..     242     307 ..     221     311 .. 0.55
   2 !    6.6   3.1     0.009       9.5      59      92 ..     360     392 ..     325     395 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.5e-06
    PF07172.6  36 keeevkdekyggggkh............ggGgygggggggngGGGykgggGgygggggggeggyGgG 90 
                   ++e ++ k+    +h              +g g ggg  + GGG +g gGg  g ggg +g  GgG
  MMETSP0890-20130614|10044_1 242 RKKELEERKKKAAEEHrkkmqqeeaeraASSGPGMGGGMPGMGGGMPGMGGGMPGMGGGMPGM-GGG 307
                  222222222222222222333344444455555556666678888888888888888888766.666 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.009
    PF07172.6  59 gggggngGGGykgggGgygggggggeggy...GgGyg 92 
                   gg  + GGG +gg Gg    g g +g     GgG  
  MMETSP0890-20130614|10044_1 360 SGGMPGMGGGMPGGMGG----GMGMPGSSpnfGGGAT 392
                  34444445555554443....3333333344466654 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.014        15       8      30 ..     119     141 ..     115     146 .. 0.89
   2 !    9.9   0.1     0.001       1.1       3      42 ..     152     191 ..     150     193 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.014
    PF13428.1   8 arallalGdpdeAiallrralal 30 
                  a a +  G++d+A++ + +al++
  MMETSP0890-20130614|10044_1 119 ASAAASEGNYDDALKFYGEALEA 141
                  7889999*************985 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.001
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLa 42 
                  +l+++a++ll l +p++A+  +++al  +Pd+ +al+  +
  MMETSP0890-20130614|10044_1 152 TLAKRADILLKLDRPAAAVHDCDAALIINPDSVRALKTRG 191
                  6789******************************997665 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.0   7.9e-06    0.0083      13      67 ..     120     171 ..     117     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.9e-06
    PF13424.1  13 lvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAle 67 
                   +   +g+yd+Al++y +ale  +++  +++  a++l   a+++l+l + ++A+ 
  MMETSP0890-20130614|10044_1 120 SAAASEGNYDDALKFYGEALEAEAVT--ASLS-ATTLAKRADILLKLDRPAAAVH 171
                  566789***************97666..4555.*****************99986 PP

>> PF12235.3  Fragile X-related 1 protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.5   1.6e+03      82      97 ..     101     116 ..      97     129 .. 0.69
   2 ?   -0.6   0.0       1.1   1.1e+03      51      78 ..     185     212 ..     180     222 .. 0.79
   3 ?   14.8   1.0   1.9e-05      0.02      76     127 ..     235     288 ..     223     323 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.5
    PF12235.3  82 errdElsdrslagded 97 
                  ++  E  d+s+ag+  
  MMETSP0890-20130614|10044_1 101 DETPEDADWSIAGEKK 116
                  4566889999999763 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.1
    PF12235.3  51 RsYsgRGrgrrganaasgtnseasnasE 78 
                  R+ + RG++ r  ++   +n++ + a +
  MMETSP0890-20130614|10044_1 185 RALKTRGKANRRLGYWTKANLDLAAAQN 212
                  7778899999999998888888887765 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 1.9e-05
    PF12235.3  76 asEteserrdElsdrslagde.dreprsrrd.srrrrggrgRgqagrgrggggk 127
                  a E + er++El +r   ++e  r+++++ + +r+   g+g g ++ g ggg+ 
  MMETSP0890-20130614|10044_1 235 AKERDAERKKELEERKKKAAEeHRKKMQQEEaERAASSGPGMGGGMPGMGGGMP 288
                  678999999999998876666379999988844445599999999999988876 PP

>> PF01956.11  Integral membrane protein DUF106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00018      0.19      39      93 ..     228     283 ..     210     296 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00018
   PF01956.11  39 dkk.mekykkrekeiqkrarelqkngdklklkklekrkeelkedqkemmmeqmkpn 93 
                  dk  +e +k+r++e +k+ +e +k+  +++ kk++++++e  + +  +m + m ++
  MMETSP0890-20130614|10044_1 228 DKAaSELAKERDAERKKELEERKKKAAEEHRKKMQQEEAERAASSGPGMGGGMPGM 283
                  45556788888888899999999999999999999998888888777777666655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   0.00011      0.11       7      30 ..     118     141 ..     117     143 .. 0.90
   2 ?   -1.2   0.0         2   2.1e+03       4      21 ..     153     170 ..     150     182 .. 0.79
   3 ?   -1.3   0.0       2.1   2.2e+03       7      25 ..     190     208 ..     185     217 .. 0.63
   4 ?   -1.9   0.1       3.2   3.3e+03      10      21 ..     256     267 ..     253     269 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
                  ---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   7 lGdiYrqlGdydkAkeylekalel 30 
                  ++++ ++ G+yd A++++ +ale 
  MMETSP0890-20130614|10044_1 118 QASAAASEGNYDDALKFYGEALEA 141
                  6888999***************96 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2
                  TTT---HHHHTT-HHHHH CS
    PF13181.1   4 yynlGdiYrqlGdydkAk 21 
                  +  ++di+++l +  +A 
  MMETSP0890-20130614|10044_1 153 LAKRADILLKLDRPAAAV 170
                  66789*****99988886 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 2.1
                  ---HHHHTT-HHHHHHHHH CS
    PF13181.1   7 lGdiYrqlGdydkAkeyle 25 
                  +G++ r lG + kA   l 
  MMETSP0890-20130614|10044_1 190 RGKANRRLGYWTKANLDLA 208
                  6777777777777654444 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 3.2
                  HHHHTT-HHHHH CS
    PF13181.1  10 iYrqlGdydkAk 21 
                   +r++++ ++A+
  MMETSP0890-20130614|10044_1 256 EHRKKMQQEEAE 267
                  57899*****97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00019       0.2       6      27 ..     119     140 ..     117     149 .. 0.86
   2 ?   -1.0   0.0       1.7   1.8e+03       7      18 ..     192     203 ..     186     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
    PF13176.1   6 arlysrlgdyekAielyeraLa 27 
                  a++  + g+y++A+++y +aL+
  MMETSP0890-20130614|10044_1 119 ASAAASEGNYDDALKFYGEALE 140
                  6778899************775 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.7
    PF13176.1   7 rlysrlgdyekA 18 
                  ++ +rlg++ kA
  MMETSP0890-20130614|10044_1 192 KANRRLGYWTKA 203
                  56689****998 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.1   3.2e+03     430     444 ..      14      27 ..      13      33 .. 0.78
   2 ?    8.6   0.9   0.00055      0.57     234     276 ..     224     266 ..     220     278 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.1
   PF04499.10 430 Aeevvkfseryppel 444
                  Aeevvk ++++p+ l
  MMETSP0890-20130614|10044_1  14 AEEVVKECQKNPS-L 27 
                  8999999999987.3 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00055
   PF04499.10 234 gLLNekkgeeivkerDaererlleelqkaleeeeeseeeaedt 276
                  +L  +k + e++kerDaer++ lee +k++ ee  ++ ++e+ 
  MMETSP0890-20130614|10044_1 224 SLVKDKAASELAKERDAERKKELEERKKKAAEEHRKKMQQEEA 266
                  5778999***************999888888877644444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1343  (0.09823); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.92u 0.44s 00:00:01.36 Elapsed: 00:00:01.25
# Mc/sec: 786.01
//
Query:       MMETSP0890-20130614|10063_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.75
# Mc/sec: 456.91
//
Query:       MMETSP0890-20130614|10126_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0056   16.5   0.5       0.83    9.5   0.0    2.8  3  PF02018.12 Carbohydrate binding domain


Domain annotation for each model (and alignments):
>> PF02018.12  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0028        39       2      17 ..      22      37 ..      21      49 .. 0.92
   2 ?   -1.2   0.0      0.12   1.7e+03     104     120 ..      82      98 ..      65     104 .. 0.62
   3 !    9.5   0.0   6.1e-05      0.83      45      68 ..     157     182 ..     121     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0028
                 B-SS------.--TT- CS
   PF02018.12  2 nllkngtFedgglegW 17
                 nll ng+Fe+g+ + W
  MMETSP0890-20130614|10126_1 22 NLLTNGGFENGDDGSW 37
                 89********999999 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.12
                  -EEEEEEEE-------- CS
   PF02018.12 104 wktlegtFtipstdknv 120
                    +le++Ft+p   +++
  MMETSP0890-20130614|10126_1  82 SSKLEQEFTVPLVVSSL 98 
                  47899999999555555 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 6.1e-05
                  -..E---E....E----TT-EEEE-E CS
   PF02018.12  45 e..twdgqiiditirlekgktYtvsf 68 
                  +  +w+   +d  + l+ g+tY++ f
  MMETSP0890-20130614|10126_1 157 NafAWNPFSQDLLSELKSGETYKFRF 182
                  3468********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.81
# Mc/sec: 748.49
//
Query:       MMETSP0890-20130614|10129_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-35  121.0   0.0    4.4e-35  120.5   0.0    1.1  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
    0.00013   20.7   0.1       0.27    9.8   0.0    2.2  2  PF03308.11 ArgK protein
     0.0043   15.7   0.0     0.0062   15.1   0.0    1.2  1  PF06068.8  TIP49 C-terminus
     0.0064   16.1   0.0      0.011   15.3   0.0    1.4  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0072   15.1   0.1       0.01   14.6   0.0    1.4  1  PF00437.15 Type II/IV secretion system protein
     0.0093   15.2   0.0      0.018   14.2   0.0    1.6  1  PF01121.15 Dephospho-CoA kinase
  ------ inclusion threshold ------
      0.019   15.2   0.2      0.043   14.0   0.1    1.6  1  PF13191.1  AAA ATPase domain
      0.023   13.7   0.0      0.036   13.1   0.0    1.3  1  PF02463.14 RecF/RecN/SMC N terminal domain
      0.027   13.7   0.1      0.041   13.1   0.0    1.3  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
      0.027   14.3   0.0      0.075   12.9   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
      0.029   13.6   0.0      0.047   12.9   0.0    1.4  1  PF13481.1  AAA domain
      0.029   15.0   0.0      0.051   14.2   0.0    1.5  1  PF13207.1  AAA domain
      0.035   13.7   0.1        0.1   12.2   0.1    1.9  1  PF13245.1  Part of AAA domain
      0.038   13.6   0.0      0.056   13.1   0.0    1.4  1  PF04851.10 Type III restriction enzyme, res subunit
       0.04   14.1   0.1      0.081   13.1   0.0    1.5  1  PF13476.1  AAA domain
      0.055   12.5   0.0       0.54    9.3   0.0    2.0  2  PF12846.2  AAA-like domain
      0.059   11.7   0.0      0.082   11.2   0.0    1.1  1  PF10443.4  RNA12 protein
      0.094   12.1   0.0       0.14   11.6   0.0    1.3  1  PF05729.7  NACHT domain
      0.099   12.7   0.0       0.18   11.9   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
        0.1   12.1   0.1       0.38   10.2   0.1    1.8  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
       0.11   12.0   0.1       0.19   11.3   0.1    1.4  1  PF03266.10 NTPase
       0.11   11.2   0.0       0.12   11.2   0.0    1.3  1  PF07693.9  KAP family P-loop domain


Domain annotation for each model (and alignments):
>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.0   7.1e-38   4.4e-35       3     173 ..      49     214 ..      47     219 .. 0.94

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 7.1e-38
                  EEEE-------HHHHHHHHCHS---S-EEEEES-----HCCCCCHHT-S-.....EEEE----ECC-.TTS-HHHHHCCCHHHCH.-T-SEEEEE---.-SGGGGHHHHSHHHHHHEEE-EEEEEEETTTHCHHHHHHHHHHHHHCT-SEEEEE-CCCTTTT...HHHHHHHHHHH-TT CS
   PF02492.14   3 tvltGflGsGKTtLleklleknreglkiaVivndfgetkiDaellretgve....ivelnnGciCct.lredllmelealeelke.erldvlliEttG.laepapltfteeelksdlgldavvtvvdvknltegedkpekledqlaaAdlivlnKiDlldae.adlekleedlrklnpe 173
                  + ++G++GsGKT+L+ +l+++ re+  +aV++nd+  t +Dae+l+++++     ++ +++G +++  +red++ +leale+l +  ++ +ll E++G ++ + ++         +  +d++++v+dv   + g++ p+k +  ++++dl+++nKiDl+ a+ a+l+ ++ed+++++ +
  MMETSP0890-20130614|10129_1  49 VGIGGPVGSGKTALVLALCQALREKITLAVVTNDIF-TREDAEFLTRKQALehgrVIAVETGGCPHAaIREDVSANLEALENLTQqFQPRLLLCESGGdNLAANFS---------SELADFTIYVIDV---AGGDKVPRKGGPGITQSDLLIINKIDLAAAVgASLDIMREDAKRMRGH 214
                  789*****************9999************.********9997767888***************************99877899********87777777.........999**********...********************************************9987 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00089      0.55      29      56 ..      46      73 ..      30      84 .. 0.84
   2 !    9.8   0.0   0.00044      0.27     141     227 ..     155     238 ..     139     245 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00089
                 -EEE--B-------HHHHHH---HHHH- CS
   PF03308.11 29 alvvGltGvPGaGkstlveklikelrrr 56
                 a  vG+ G  G+Gk  lv +l + lr++
  MMETSP0890-20130614|10129_1 46 AFTVGIGGPVGSGKTALVLALCQALREK 73
                 779*******************999986 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00044
                  TT-SS-EEEE---------------TTT-SEEEE----HHHHHHHHHHHHHHHHHS--SBTTB--EEEE-BTTTTB--HHHHHHHHH CS
   PF03308.11 141 evadtvvlvtlpgaGDelqaikaGlleiaDilvvnkaDkeeaekaarelraaleleeekekeWrppvlktsavegeGidelvdaiee 227
                  e+ad ++ v+  ++GD++       +  +D+l++nk D ++a  a  +l ++ e  + + ++ ++p + ++ +++ G+d+++++i  
  MMETSP0890-20130614|10129_1 155 ELADFTIYVIDVAGGDKVPRKGGPGITQSDLLIINKIDLAAAVGA--SLDIMREDAK-RMRGHSAPTIFAAVKHNLGLDHIIQEIIA 238
                  57899999999999999976554456779*********9877655..5555555444.45556666666667889999999999875 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05    0.0062      53      92 ..      49      87 ..      39     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-05
    PF06068.8 53 vLlaGppgtGktalaiaiskelgedvpfvalsgsevysle 92
                 v + Gp g+Gktal +a+ ++l e++  +++ + ++++ e
  MMETSP0890-20130614|10129_1 49 VGIGGPVGSGKTALVLALCQALREKITLAVV-TNDIFTRE 87
                 6689**********************98755.56777765 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.011       6     103 ..      53     148 ..      49     173 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-05
                  ------HHHHHHHGGGGB.S--EEEEE--TT--HHHH---B--.........--------G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EE CS
    PF07728.9   6 GppGtgKselaerlaeal.nreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllpeggelv 103
                  Gp G+gK+ l+  l++al ++ ++ v  ++  t+ed    ++  ++  ++   ++v+ +  ++ ++ ++v  a+ e+l+ L + +  r ll ++gg   
  MMETSP0890-20130614|10129_1  53 GPVGSGKTALVLALCQALrEKITLAVVTNDIFTREDAEFLTR--KQALEHGRVIAVETGGCPHAAIREDVS-ANLEALENLTQQFQPRLLLCESGGDNL 148
                  9*****************544444455555556666666666..677777777778888888889999988.889999998888888877766665554 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-05      0.01     106     165 ..      27      89 ..       2     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-05
   PF00437.15 106 dlaakgalkkklaevlrqavqargnilvsGgTgsGKttllnallaeinkd......derivtiEDp 165
                  +l ++   +  ++e+l++a     ++ + G+ gsGKt l+ al + + ++      ++ i t ED+
  MMETSP0890-20130614|10129_1  27 KLEQQAHKNYGQKEILNNA---AFTVGIGGPVGSGKTALVLALCQALREKitlavvTNDIFTREDA 89 
                  44555555678999*****...999*******************9999986555555566666665 PP

>> PF01121.15  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-05     0.018       2      89 ..      48     137 ..      47     166 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-05
                  EEEEB-------HHH....HHHHHH.---EEEEHHHHHHHTTHCTHHHHHHHHHH-GGCCB-----B-HHHHHHHHHTSHHHHHHHHHHHHHH CS
   PF01121.15   2 vvgltGgigsGKstv....anlfad.lgvpivDaDviArevvepgsealaaiveeFgeeilledGeLdReaLrekvFsdpeekkaLnallhPl 89 
                  +vg+ G +gsGK+++    ++++++ + + +v  D+  re  e  +   ++ + e+g+ i  e G    +a+re v ++ e+ + L + + P 
  MMETSP0890-20130614|10129_1  48 TVGIGGPVGSGKTALvlalCQALREkITLAVVTNDIFTREDAEFLT---RKQALEHGRVIAVETGGCPHAAIREDVSANLEALENLTQQFQPR 137
                  69***********862222555665566666666666665433322...344568899999999********************999999996 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.9e-05     0.043      28      65 ..      51      87 ..      38     165 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.9e-05
    PF13191.1 28 vtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65
                 + Gp G+GK++L+ +l++++ +e+   a    d ++r+
  MMETSP0890-20130614|10129_1 51 IGGPVGSGKTALVLALCQAL-REKITLAVVTNDIFTRE 87
                 78*************66664.44555555555555555 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.7e-05     0.036       4      49 ..      27      71 ..      26      97 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.7e-05
                 --EEES-SS----EE------SEEEE--------HHHHHHHHHH-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  4 rleienFksyagktvilpfsksftaivGpNGSGKsnvldAilFvLG 49
                 +le +  k+y  ++ il+ +     i Gp GSGK+ ++ A++  L 
  MMETSP0890-20130614|10129_1 27 KLEQQAHKNYG-QKEILNNAAFTVGIGGPVGSGKTALVLALCQALR 71
                 5778899***6.777777777677899***********99987665 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.7e-05     0.041       9     105 ..      56     169 ..      49     204 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.7e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   9 GvGKTtlaanLaralakrglrVlliDlDpqannssllgkvseilkkgeekasal...................lenfeagllae......geeglvesllkkalealikeayDvviiDtapg 105
                  G+GKT l+++L++al++ +   +++  D+ +  ++ ++  +++l++g  +a  +                   len+++++  +      g+++     l++ + + + +++ + +iD a+g
  MMETSP0890-20130614|10129_1  56 GSGKTALVLALCQALRE-KITLAVVTNDIFTREDAEFLTRKQALEHGRVIAV-EtggcphaairedvsanleaLENLTQQFQPRlllcesGGDN-----LAANFSS-ELADFTIYVIDVAGG 169
                  9****************.7888888887776655555433344444443333.25777777777766666555555555554446654333333.....4444444.333477778888877 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012     0.075       2      79 ..      49     135 ..      48     224 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
                  EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEE.........ETTEEEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSS CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenev.........kkekiilvDtPGiiegasedkeiegikkylekv.erad 79 
                  v+i G   +GK++L+ aL+++ + +    + +T di t++ +         +++++i v t G  + a +++ ++   ++le++ ++++
  MMETSP0890-20130614|10129_1  49 VGIGGPVGSGKTALVLALCQALR-EKITLAVVTNDIfTREDAefltrkqalEHGRVIAVETGGCPHAAIRED-VSANLEALENLtQQFQ 135
                  8999***************6422.333334455555333222223322222233478888888544444444.3323334444433332 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.6e-05     0.047      36      97 ..      49     127 ..      39     165 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.6e-05
    PF13481.1  36 tllaGapgtGKStlalqlaaava...............tGepflg.pvvpepgrVlylsaEds.eaelrrrlsailaal 97 
                  + + G+ g+GK+ l+l+l+ a+                +  +fl+ + + e+grV+ + + +   a +r+ +sa l+al
  MMETSP0890-20130614|10129_1  49 VGIGGPVGSGKTALVLALCQALRekitlavvtndiftrEDAEFLTrKQALEHGRVIAVETGGCpHAAIREDVSANLEAL 127
                  5689****************99999999998888887766777775444499999999888864667888888887776 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   8.3e-05     0.051       2      46 ..      49      97 ..      48     176 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.3e-05
                 E--B--TT---HHHHHHHHHHS....TEEEEEGGGB-.-GGGS-.B----- CS
    PF13207.1  2 iaitGppGsGKsTlakeLaerl....glpvlslddll.reeglk.elddge 46
                 ++i Gp GsGK+ l  +L+++l     l  + ++d++ r e+ +  ++++ 
  MMETSP0890-20130614|10129_1 49 VGIGGPVGSGKTALVLALCQALrekiTLA-VVTNDIFtR-EDAEfLTRKQA 97
                 89*****************9996633344.677774432.22221333333 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00017       0.1      15      35 ..      51      71 ..      41     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
    PF13245.1 15 vtGgPGtGKTttlaaiiaall 35
                 + G+ G+GKT++++a+  al 
  MMETSP0890-20130614|10129_1 51 IGGPVGSGKTALVLALCQALR 71
                 579*******99999998886 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     9e-05     0.056      27      78 ..      48      97 ..      23     136 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9e-05
   PF04851.10 27 rglivmaTGtGKTlvaasliarlarkflflvprkelleqaleefkkfeskki 78
                  + i  + G+GKT + ++l+++l +k+ + v ++++  +   ef   + k+ 
  MMETSP0890-20130614|10129_1 48 TVGIGGPVGSGKTALVLALCQALREKITLAVVTNDIFTREDAEF--LTRKQA 97
                 55677899*****************9999999999999999999..444433 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00013     0.081      23      47 ..      50      74 ..      34     110 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00013
    PF13476.1 23 lItGpNGsGKTTildAiclaLygkt 47
                  I+Gp GsGKT +  A+c aL  k+
  MMETSP0890-20130614|10129_1 50 GIGGPVGSGKTALVLALCQALREKI 74
                 59*******************7765 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00086      0.54       4      56 ..      49     107 ..      46     134 .. 0.75
   2 ?    1.2   0.0      0.25   1.5e+02     258     311 ..     196     248 ..     191     249 .] 0.73

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00086
    PF12846.2   4 tlilGppGsGKSvllkklvlqllargprvvii.Dp..ggeysglaral..g.gqvidlg 56 
                  + i Gp GsGK+ l+ +l+ +l ++ +  v+  D+    +++ l+r    + g+vi+++
  MMETSP0890-20130614|10129_1  49 VGIGGPVGSGKTALVLALCQALREKITLAVVTnDIftREDAEFLTRKQalEhGRVIAVE 107
                  5688**************99988876666666777764444444444422346666655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.25
    PF12846.2 258 gspegadfldelaregRkfgvgiila..tQsl..sdlppsekakgilnnsttkiilrq 311
                  + ++  d+++e+a+++R + + +i+a   ++l  ++++++     i++ s+t + l+q
  MMETSP0890-20130614|10129_1 196 AVGASLDIMREDAKRMRGHSAPTIFAavKHNLglDHIIQE-----IIAASDTAYSLHQ 248
                  45677899***********999988722577665555555.....8888888777766 PP

>> PF10443.4  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013     0.082      14      65 ..      43      94 ..      31     101 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
    PF10443.4 14 envntfivvkgPrGSGkkeLvldrvlkdrkk.vLvidCdelvkarndaeliea 65
                 +n+   + + gP GSGk+ Lvl    + r+k +L +  ++++  r+dae++++
  MMETSP0890-20130614|10129_1 43 NNAAFTVGIGGPVGSGKTALVLALCQALREKiTLAVVTNDIFT-REDAEFLTR 94
                 444444669************9866665555467777888887.999998875 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00022      0.14       3      28 ..      49      74 ..      48     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00022
    PF05729.7  3 vilqGeaGsGKTtLlqklasawakgk 28
                 v + G+ GsGKT+L+  l++a++++ 
  MMETSP0890-20130614|10129_1 49 VGIGGPVGSGKTALVLALCQALREKI 74
                 6688*****************99875 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00028      0.18       5      26 ..      53      74 ..      49     106 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00028
                 -------HHHHHHHHHHCTHEE CS
   PF00004.24  5 GppGtGKTllakavakelgvef 26
                 Gp G GKT+l+ a+++ l  ++
  MMETSP0890-20130614|10129_1 53 GPVGSGKTALVLALCQALREKI 74
                 9***************996443 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0006      0.38      17      43 ..      48      74 ..      34      85 .. 0.80
   2 ?   -0.9   0.0       1.7   1.1e+03      74     116 ..      86     127 ..      72     133 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0006
   PF02367.12 17 vvlLsGdlGaGKTtlvkglakglgvkg 43
                  v + G++G+GKT lv +l ++l +k 
  MMETSP0890-20130614|10129_1 48 TVGIGGPVGSGKTALVLALCQALREKI 74
                 46678*****************97765 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.7
   PF02367.12  74 keelellgildealedsvivvEWserlkeelpekrlevelkvl 116
                   e++e+l+ ++  ++  vi+vE +   ++   +++++ +l+ l
  MMETSP0890-20130614|10129_1  86 REDAEFLTRKQALEHGRVIAVETGG-CPHAAIREDVSANLEAL 127
                  4566777777888889999999654.44446666666666665 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00031      0.19       2      26 ..      49      73 ..      48      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00031
                 EEEE-------HHHHHHHHHH-... CS
   PF03266.10  2 vfiTGepgvGKtTlvkkvlellkse 26
                 v i G+ g+GKt lv  ++++l+++
  MMETSP0890-20130614|10129_1 49 VGIGGPVGSGKTALVLALCQALREK 73
                 7899******************876 PP

>> PF07693.9  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00019      0.12      18      48 ..      44      85 ..      21     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00019
    PF07693.9 18 atpiviglyGkWGsGKssllnlledelkef...........k 48
                    +++g+ G+ GsGK++l+  l ++l+e+            
  MMETSP0890-20130614|10129_1 44 NAAFTVGIGGPVGSGKTALVLALCQALREKitlavvtndifT 85
                 4679*******************9999999555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.72
# Mc/sec: 828.74
//
Query:       MMETSP0890-20130614|10206_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-15   56.0   4.2    3.6e-15   56.0   2.9    1.5  2  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.0         1   1.4e+04      73      75 ..       4       6 ..       2      15 .. 0.38
   2 !   56.0   2.9   2.6e-19   3.6e-15       3      87 ..      46     126 ..      44     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 1
   PF00428.14 73 eee 75
                 eee
  MMETSP0890-20130614|10206_1  4 EEE 6 
                 222 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 2.6e-19
   PF00428.14   3 taadikavlkaagveveaerlkllvkalegk.dikeliangsaklaaaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                  +++  +avlka+g ev ++++k++ kal++k ++++ + +++      ++ +  +aaa+aaa+aaee+k+eeee  ee+ dmG+g+
  MMETSP0890-20130614|10206_1  46 SEERFQAVLKASGNEVAPYWIKVFSKALTKKgSLESFLPKPGGG---GGGGGGGGAAADAAAPAAEEKKEEEEE--EEEIDMGGGM 126
                  5777899**********************8879999**999955...445566666666666666666666664..8899***774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.53
# Mc/sec: 628.48
//
Query:       MMETSP0890-20130614|10204_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-78  261.1   0.0    7.1e-78  260.9   0.0    1.0  1  PF00121.13 Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.0   5.2e-82   7.1e-78       2     243 ..      41     282 ..      40     283 .. 0.99

  Alignments for each domain:
  == domain 1    score: 260.9 bits;  conditional E-value: 5.2e-82
                  EEEEEETT-S.-HHHHHHHHHHHHCCCHHTTTEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS-----TTHHBHHHHHHTT--EEEESEHHHHHHS.-BHHHHHHHHHHHHHTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHHHHH CS
   PF00121.13   2 iiigNwKmnk.tleeakellkkllaaklkeekvevvvappflyLesvkkalkeskikvgaQnvsaedsGafTGevsaemlkdlgvkyviiGHSErrqyfgetdeevakkvkaalkagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesflai 243
                  ii+gNwKmn  +l ea +l+++l++a+++  + e +v+pp+  L +v +++k+s i++gaQ +++e+ Ga+TG +sa+m k +g++y++ GHSErr +fg +d++++++v + +++g++p lC+gEt++e+e++  ++v++ ql+++l ++++e++k+++iAYePvwAIGtg v+ ++ aq++h++ir+++a++++ e+ae+vri+yGGsv++e + el++++d+dG LvGgasl  e+f +i
  MMETSP0890-20130614|10204_1  41 IIGGNWKMNPaSLTEAVDLANALVSASSDL-RGEAIVFPPAPFLTAVGDIIKDSPIHLGAQCIYYENGGAYTGAMSASMAKSVGATYILAGHSERRVVFGDNDDDINRQVLKTIENGMKPCLCIGETKDEYESNLVQSVCAIQLAKCLVGVSKEDMKDIVIAYEPVWAIGTGLVCPSDVAQNTHEFIRSKIADMYDMETAEAVRIQYGGSVSPESVDELMSMPDIDGCLVGGASLVGEKFSRI 282
                  89*******999**********99999988.*****************************************************************************************************************************************************************************************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.87
# Mc/sec: 787.77
//
Query:       MMETSP0890-20130614|10203_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-09   35.1   3.4    1.4e-08   34.2   2.4    1.4  1  PF05002.10 SGS domain
    3.6e-08   33.7   0.3    5.7e-08   33.1   0.2    1.3  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF05002.10  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   2.4     2e-12   1.4e-08       3      53 ..     183     235 ..     181     238 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2e-12
                  XXXXXXXX..XXXXXXXXXXXX----HHHHHHHHT----CHHHHHHHHHHCT- CS
   PF05002.10   3 dWdklask..kekekkkdeeeeseelnklfkklYknadedtkrammKsfveSq 53 
                  +W +l++k  k+ + k++++++s+++++l+k++Y+++d++t++ ++ s+++S+
  MMETSP0890-20130614|10203_1 183 QWLDLKKKggKAAKLKEKNKDPSSSIMDLMKDMYESGDDKTRKIIAESMMKSR 235
                  7****988999999999**********************************97 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   8.3e-12   5.7e-08       2      78 .]      92     174 ..      91     174 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 8.3e-12
                  --EEEE...ETTEEEEEEE----.---S-EEEEE----EEEEE---.....EEE---.BSS-EEEEEEEEEE---EEEEEEEE CS
   PF04969.11   2 rydWyQ...tleeVtitipvkgv.ikkedvkveikkkslkvsikgpge.keyllege.LfgeIdpeesswkiedtkieitLkK 78 
                  +y W Q    +  Vti +++++v + k++v ++++ +s+++   g ++ k+y l +e L ++I+p+es + +++++i+i+LkK
  MMETSP0890-20130614|10203_1  92 SYGWEQgeyNSPWVTIFVNIENVgQVKDQVTCDFGVDSFDLRALGVDGtKNYRLVIEaLDKDIVPDESEIIVKKNRIKIKLKK 174
                  6888884334567******************************997777*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.79
# Mc/sec: 809.91
//
Query:       MMETSP0890-20130614|10207_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-38  128.6   0.4    1.1e-37  127.9   0.3    1.3  1  PF02777.13 Iron/manganese superoxide dismutases, C-terminal domain
    3.3e-26   91.2   0.0    5.7e-26   90.4   0.0    1.4  1  PF00081.17 Iron/manganese superoxide dismutases, alpha-hairpin domain


Domain annotation for each model (and alignments):
>> PF02777.13  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.3   1.6e-41   1.1e-37       1     105 [.     136     246 ..     136     247 .. 0.91

  Alignments for each domain:
  == domain 1    score: 127.9 bits;  conditional E-value: 1.6e-41
                  -S----HHHHHHHH---HHHHHHHHHHHH..HT------EEEEEETTTTEEEEEE-STTTBGGGTTEE.....EEEEE--SGGGTHHHHTTHHHHHHHHHGGGB-HHHHHHH CS
   PF02777.13   1 gePkgelaeaieedfGsfdefkeefeaaa..aalfgsgWawlvkdkeegklkivktenqdnplleglt.....plltiDvwEHayYldyknarpdyleafwnvvnWdevekr 105
                  geP+ +l +aie++fGs+d+fke+ +aaa  aa+fgsgW+wl++d  ++ lki++t nqdnpl++g++     p+l+iDvwEHayYl+y+n+rp+y++afw+vvnW++v++ 
  MMETSP0890-20130614|10207_1 136 GEPSKDLSTAIEKAFGSMDSFKEQWAAAAapAARFGSGWVWLIVD-GKKDLKITSTPNQDNPLMKGVEgdeglPILGIDVWEHAYYLKYQNRRPEYVSAFWDVVNWNQVNSW 246
                  69**********************9988733589***********.999**************99853333449**********************************9875 PP

>> PF00081.17  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   8.3e-30   5.7e-26       2      82 .]      49     130 ..      48     130 .. 0.91

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 8.3e-30
                  ------SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHH.CCTHHHHHHHHCHHHHHHCHHHHHHHHHHHHTB- CS
   PF00081.17   2 yeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleea.kkkleelilkklekalrnnagghvnHslfwknls 82 
                  y+Lp+LpY+y+aLeP i++ t+++HhdkHh+tYv ++N ale+ e+   ++l + ++k   k++rn +gg+ nH+lfw+ ++
  MMETSP0890-20130614|10207_1  49 YDLPDLPYPYEALEPSIDAATMKIHHDKHHATYVAGINGALEGKEQPpIADLMTDAIKGGVKGIRNSGGGVYNHDLFWQVMA 130
                  9******************************************9664156777777789999*****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.33s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 802.94
//
Query:       MMETSP0890-20130614|10209_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-54  184.5   0.1    2.2e-54  184.2   0.1    1.0  1  PF13685.1  Iron-containing alcohol dehydrogenase
    1.4e-14   53.3   0.6    1.9e-14   52.9   0.4    1.1  1  PF00465.14 Iron-containing alcohol dehydrogenase
     0.0038   16.0   1.1      0.016   13.9   0.0    2.3  3  PF01761.15 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.1   4.8e-58   2.2e-54       2     250 .]      26     297 ..      25     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 184.2 bits;  conditional E-value: 4.8e-58
    PF13685.1   2 igegaleelgeilkkl.....klkkvlvvadentykaagekveeslkeagvevevleeleeea...dleaveklveal...rekdadlvvavGsGtinDlaKyvsaklgkpyisvpTaaSmDGyaspgasltvdngkkktlspaklPiaiiaDldiikkAPkrliasGfGDllgkitaladwklaeev.aeeiaekaaelvqealeklledek.....deealkellealalsglam.....srpaSgaeHllShaleme.....akpllHGekVG 250
                  i+e+al+el+++  k        +kvl++ d +t  +ag++v++++keag +v   ee+ +++   ++ ++++  +a+   +   +d+++ vGsG + Dl+K++++++++p++ ++TaaSm+Gy+s++++  ++ g+k  + +a+ P+a++   +++++AP +++++G+GD+l+k+++  dw l++ + +++++  ++ l+ +     le+++     d++a+ ++++al+l g+am     s paSg+eHl+Sh l+++     + + +HG +VG
  MMETSP0890-20130614|10209_1  26 INENALKELPKLAIKSvsgdqTKRKVLILYDIRTLTIAGKRVANEFKEAGWQVF--EEMVPDPnemQVPKCDDKTHAIlsaKVPIIDVIIPVGSGVLSDLGKWLAFERKVPFLTFATAASMNGYTSANVAPSIN-GVKSLV-HAVPPYAVVSEPQVLSNAPHEMTVAGLGDVLAKSVSSLDWLLNNLLfNDYYCARSVGLITDIEPLYLEQSHriathDPQAIVAMTNALMLTGVAMtmagtSAPASGGEHLISHSLDIMsaidgHPHDFHGRQVG 297
                  778899999887665543321346*************************99985..4444444011344444433333211334689**********************************************5.***988.5*******************************************555**********99987766666444455559***********999999999999******************655544889******9 PP

>> PF00465.14  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.4   4.2e-18   1.9e-14       1     277 [.      21     301 ..      21     316 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 4.2e-18
                  -SEEEE---GGGGHHHHHTTT..S.....EEEEEEEHHHHHTH.HHHHHH...HC---EEEEEE.E-----HHHHHHH...HTTS-T.T-...-EEE------HHHHHHHHHHHTT...................--BEE--SS-S-S-TT-SEEEEE-----EE.EEEE-S.--SEEE--HHHHHHS-HHHHH-----HHHHHHHHHHH--.---HHHHHHHHHHHHHHH.....HH----HH.HHHH.HHHHTT....-----------H.....HHHHH---G......-GGGS----TTT--HH CS
   PF00465.14   1 Ptkivfgegaleelgeelkkl..g.....kvlivtdkslkklg.lldkvlesLeeagievtvfdgvepeptleeveea...aalareeka...dvivAvGGGsviDtAKaiallltnpgelldyegkakkkkkpalpliaiPTtaGtGsevtplavitdeetkrklslaspkllPdlaivDpeltltlPkrvtaatglDalthaiEayvskk.anplsdalaeeairliae....nlpravadp.edleareqmllastlAGlafsnaglga.....aHalahalg......glfgipHGeavaillp 277
                  P++i+++e+al+el++++ k   g     kvli++d   ++l  + ++v++  +eag  ++vf+++ p+p + +v ++   ++++ ++k+   dvi+ vG G   D++K +a+  +                   +p+ +  T a+    ++++   +   +++k sl +  + P++++  p+++ ++P+++t+a+ +D+l++ + ++        + d ++ +++ li +    +l+++++ + +d +a  +m  a +l G+a++ ag++a      H ++h+l       g+ +  HG+ v++++ 
  MMETSP0890-20130614|10209_1  21 PEHIIINENALKELPKLAIKSvsGdqtkrKVLILYDI--RTLTiAGKRVANEFKEAG--WQVFEEMVPDPNEMQVPKCddkTHAILSAKVpiiDVIIPVGSGVLSDLGKWLAFERK-------------------VPFLTFATAASMNGYTSANVAPS--INGVK-SLVHA-VPPYAVVSEPQVLSNAPHEMTVAGLGDVLAKSVSSLDWLLnNLLFNDYYCARSVGLITDieplYLEQSHRIAtHDPQAIVAMTNALMLTGVAMTMAGTSApasggEHLISHSLDimsaidGHPHDFHGRQVGVATC 301
                  899*************7766667356789******66..555557899999888887..5669999999988877555111555555555677*******************9666...................*********99987777777666..88999.99996.48*******************************99976443666999999999999998666788899888889999999*********************99999999999988888877888899999988765 PP

>> PF01761.15  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.087     4e+02      95     126 ..      21      52 ..      18      92 .. 0.69
   2 !   13.9   0.0   3.6e-06     0.016      20     122 ..      98     195 ..      85     217 .. 0.80
   3 ?   -1.9   0.1      0.24   1.1e+03     183     218 ..     272     311 ..     271     318 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.087
                  -SEEEEEGGGGCCS-HHHHH---HHHHHHHHT CS
   PF01761.15  95 PkaVlidlevLktlpkrelraGlaEviKyali 126
                  P+ ++i+ + Lk lpk  +++  +   K  ++
  MMETSP0890-20130614|10209_1  21 PEHIIINENALKELPKLAIKSVSGDQTKRKVL 52 
                  899999********999998877777665543 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.6e-06
                  HHHHHCSS--TT-EEEEE----TTT----HHHHTT---EEEE---SHHHHHCTT------BB-------B------SEEEEEGGGGCCS-HHHHH---HHHHH CS
   PF01761.15  20 lealleaklerksliialGGGvvgDlaGfvAatylRGvrfiqvPTtllaqvDssvGgKtginlpegKNliGaFyqPkaVlidlevLktlpkrelraGlaEviK 122
                  ++a+l+ak+   ++ii +G Gv+ Dl  + A  + R v+f++  T+  a +    ++ ++  ++++K l+ a  +P aV+ +++vL++ p++   aGl+ v+ 
  MMETSP0890-20130614|10209_1  98 THAILSAKVPIIDVIIPVGSGVLSDLGKWLA--FERKVPFLTFATA--ASMNGYTSANVAPSINGVKSLVHA-VPPYAVVSEPQVLSNAPHEMTVAGLGDVLA 195
                  6678888999999*****************9..99******99986..333344444444445567777755.69************************9975 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.24
                  -----CCCHHCTT....TS----TTT---HHHHHHHHH-- CS
   PF01761.15 183 HtigHaiEallgy....kllHGeaVaiGmvlaaelseklg 218
                  H i+H +  ++      +  HG+ V + +++ a l ek+ 
  MMETSP0890-20130614|10209_1 272 HLISHSLDIMSAIdghpHDFHGRQVGVATCMMAALYEKVI 311
                  7788888877766544567799999999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.96
# Mc/sec: 826.24
//
Query:       MMETSP0890-20130614|10208_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-44  149.7   0.4    1.4e-43  148.1   0.0    2.0  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.1e-08   32.9   0.8    1.5e-07   31.1   0.1    2.2  2  PF07728.9  AAA domain (dynein-related subfamily)
    1.2e-07   31.6   0.0    1.2e-07   31.6   0.0    2.3  2  PF07724.9  AAA domain (Cdc48 subfamily)
    2.5e-06   27.5   0.4    0.00044   20.2   0.3    2.7  1  PF13401.1  AAA domain
    7.7e-05   23.3   0.1     0.0021   18.7   0.0    2.5  2  PF13207.1  AAA domain
    0.00011   22.4   0.1    0.00032   20.9   0.1    1.8  1  PF13191.1  AAA ATPase domain
    0.00023   20.1   0.0    0.00058   18.8   0.0    1.7  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00023   20.0   0.0    0.00047   19.0   0.0    1.5  1  PF05673.8  Protein of unknown function (DUF815)
    0.00054   19.0   0.1     0.0013   17.8   0.1    1.5  1  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00057   18.5   0.0     0.0014   17.2   0.0    1.7  1  PF06068.8  TIP49 C-terminus
    0.00079   19.2   0.0     0.0017   18.1   0.0    1.6  1  PF13671.1  AAA domain
     0.0013   18.6   0.2     0.0042   16.9   0.0    2.0  2  PF13521.1  AAA domain
     0.0015   17.8   0.0     0.0035   16.6   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
     0.0017   18.1   0.1      0.011   15.5   0.0    2.1  2  PF13173.1  AAA domain
      0.002   17.6   0.2      0.022   14.2   0.0    2.2  2  PF13086.1  AAA domain
     0.0021   17.5   0.4      0.097   12.1   0.0    2.9  3  PF05729.7  NACHT domain
     0.0043   16.0   0.0     0.0089   15.0   0.0    1.5  1  PF06414.7  Zeta toxin
     0.0049   16.3   0.2      0.012   15.1   0.2    1.6  1  PF13479.1  AAA domain
     0.0049   16.4   0.3      0.012   15.2   0.2    1.6  1  PF13245.1  Part of AAA domain
     0.0056   15.8   0.5      0.013   14.6   0.3    1.5  1  PF11932.3  Protein of unknown function (DUF3450)
     0.0061   16.6   0.0      0.016   15.2   0.0    1.7  1  PF00910.17 RNA helicase
     0.0084   14.5   1.1      0.014   13.8   0.7    1.2  1  PF05833.6  Fibronectin-binding protein A N-terminus (FbpA)
     0.0088   15.4   0.1       0.16   11.3   0.0    2.3  2  PF00158.21 Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.011   15.3   0.2      0.064   12.8   0.0    2.4  3  PF03266.10 NTPase
      0.011   14.9   2.1       0.21   10.8   0.1    2.4  2  PF13481.1  AAA domain
      0.016   15.4   0.1       0.11   12.7   0.0    2.3  2  PF13238.1  AAA domain
      0.016   15.4   0.9        3.4    7.8   0.0    2.4  2  PF13476.1  AAA domain
      0.019   13.9   2.6       0.51    9.2   0.0    3.0  3  PF06745.8  KaiC
      0.025   13.3   0.0      0.058   12.1   0.0    1.6  1  PF01057.12 Parvovirus non-structural protein NS1
      0.039   14.1   0.2      0.071   13.3   0.1    1.4  1  PF04880.8  NUDE protein, C-terminal conserved region
      0.062   12.7   0.0       0.11   11.9   0.0    1.4  1  PF13604.1  AAA domain
      0.065   12.3   0.1       0.16   11.0   0.1    1.6  1  PF02562.11 PhoH-like protein
      0.066   12.7   1.0       0.69    9.4   0.0    2.6  3  PF01637.13 Archaeal ATPase
      0.071   12.2   1.0       0.97    8.5   0.1    2.5  2  PF12846.2  AAA-like domain
      0.073   11.7   0.1       0.15   10.7   0.0    1.4  1  PF00931.17 NB-ARC domain
      0.091   12.5   1.9       0.29   10.9   1.3    1.8  1  PF03528.10 Rabaptin
      0.095   12.2   0.0       0.23   10.9   0.0    1.6  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   3.8e-46   1.4e-43       1     131 [.     203     335 ..     203     336 .. 0.97
   2 ?   -2.0   0.0       9.4   3.5e+03      42      74 ..     372     407 ..     352     415 .. 0.62

  Alignments for each domain:
  == domain 1    score: 148.1 bits;  conditional E-value: 3.8e-46
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH...SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                  vl+yGppGtGKT+lakava+++ + f+++ gse+++ky+ge+++ +r++f+ a+e+  p i+fiDEida+a++r   ++++++e +r++ +Ll+++dg+++   +v vi+atnr d+ldpallr gR+drkie++
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTAAFISVVGSEFVQKYLGEGPRMVRDVFRLARENT-PAIVFIDEIDAIATKRfdaQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPALLRpGRLDRKIEFP 335
                  79******************************************************8.****************99888899999****************7.55***************************997 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 9.4
                  HHHHHHHHHHHHHHTS...-SEEEEEETGGGC-HHH CS
   PF00004.24  42 sekkirelfkeakeka...kpsilfiDEidalaksr 74 
                  s+++i+++ +ea  +a   +  +++  ++d+  k++
  MMETSP0890-20130614|10208_1 372 SAADISAVCQEAGLQAvreNRYVVLPKDFDKAYKKQ 407
                  555666666666444454333666666666666666 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.2   2.3e+03      38      90 ..      47     100 ..      43     103 .. 0.72
   2 !   31.1   0.1     4e-10   1.5e-07       1     137 [.     202     324 ..     202     325 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 6.2
                  HHHH---B--.........--------G-SEEEEESGGG--..-HHHHHHHHHHH CS
    PF07728.9  38 eedlkgrreiangttslvdsplvraaregeilvlDEverae..sevlnsLlslle 90 
                  +++l  +r++ + ++++v+ +++ + ++  i   +Ev+r++  + v++ ++ +++
  MMETSP0890-20130614|10208_1  47 YKQLEKERDFLDVQEQYVKDEIK-NLKRELIRAKEEVKRIQsvPLVIGQFNEMID 100
                  67777888887888888888877.7777777778888888755667777777766 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 4e-10
                  EEEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE.---.......-EEEEE-SS--.-TT-TTHHHHT CS
    PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvk.aknddlleknfrviatanpldrslnelspalrs 137
                  +vl+ GppGtgK++la+ +a  +++ +  v ++++ ++    g+r +           + r ar  +++i+++DE++ + ++ +++      e ++ l e+ ++++ ++++    +n+ vi+++n++d     l+pal++
  MMETSP0890-20130614|10208_1 202 GVLMYGPPGTGKTMLAKAVANSTTAAFISVVGSEFVQKYLGEGPRMV---------RDVFRLARenTPAIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDgFDQT----TNVKVIMATNRAD----TLDPALLR 324
                  59*******************************98888888888887.........66777777789********************998776666666665555404443....59***********....88888875 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.2e-10   1.2e-07       6     105 ..     203     296 ..     198     318 .. 0.83
   2 ?   -1.8   0.0       6.2   2.3e+03      59      84 ..     373     408 ..     347     415 .. 0.62

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.2e-10
                  EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--..-EEEETGGG----------------HHHHHHHH-- CS
    PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqileg 105
                  +l+ gp g+Gkt+laka+a+   +    ++i +  se+ +    + l +     ++    a e+   iv++DEid i+ k+   +     +Vqr+LL +l +
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTA----AFISVVGSEFVQ----KYLGEGPRMVRDVFRLARENTpaIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 296
                  6899****************9985....************....88888888899998888888889************966666666689********975 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 6.2
                  HTTT-HHHHT--.........-EEEETGGG----.- CS
    PF07724.9  59 appgyvgaeegG.........ivllDEidKihpk.e 84 
                  a++     +e G         +vl  + dK+ +k  
  MMETSP0890-20130614|10208_1 373 AADISAVCQEAGlqavrenryVVLPKDFDKAYKKqV 408
                  333344445555666666666999999999999752 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   1.2e-06   0.00044       7     121 ..     203     310 ..     197     316 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.2e-06
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrL.......s....eealeelrslldd......etgvklvl 121
                  ++ +G++G+GKT+l++ +a+          +++++f+ +  s     + qk l++            ++++ + + +r++   ++ iDE++ +       +     e+   l  ll++      +t+vk+++
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVAN----------STTAAFISVVGSE----FVQKYLGEGP----------RMVRDVFRLARENTPAIVFIDEIDAIatkrfdaQtgadREVQRILLELLNQmdgfdqTTNVKVIM 310
                  688*****************..........5666677766666....5444444444..........24555666666666677777777777565444414555444444444444444465566666665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.68   2.5e+02      30      66 ..      40      73 ..      10     138 .. 0.66
   2 !   18.7   0.0   5.5e-06    0.0021       2      67 ..     203     283 ..     203     407 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.68
                 GGGB--GGGS-.B-----B--SSGGGB-HHHHHHHH.. CS
    PF13207.1 30 lddllreeglk.elddgereskdadadllaaildglaa 66
                 +dd+ +++++  e+++++    d  ++++++++++l++
  MMETSP0890-20130614|10208_1 40 MDDY-YVKYKQlEKERDF---LDVQEQYVKDEIKNLKR 73
                 4442.2222222222333...44444555555555533 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 5.5e-06
                  E--B--TT---HHHHHHHHHHSTEEE..EEGGGB-.........-GGGS-B-----B--SSGGGB-HHHHHHHH........ CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv..lslddll.........reeglkelddgereskdadadllaaildglaa.....k 67 
                  ++ +GppG+GK+ lak++a+        +  ++++          ++++  l +++ +  +  +d+++ai+ +  +      
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTAAFisVVGSEFVqkylgegprMVRDVFRLAREN-TPAIVFIDEIDAIATKRFDaqtgaD 283
                  6789****************875443113333332333222222222333222222.3356677777777666544233331 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   8.7e-07   0.00032      23      66 ..     199     259 ..     172     345 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.7e-07
    PF13191.1  23 sp.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn................l 66 
                   p  +l +Gp+G+GK+ L++++a +  ++   + ++ f+q +                  +
  MMETSP0890-20130614|10208_1 199 PPrGVLMYGPPGTGKTMLAKAVANSTTAAFISVVGSEFVQKYLGegprmvrdvfrlarenT 259
                  4459*****************9999999999999999999888877776666655554332 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.6e-06   0.00058      53     113 ..     203     271 ..     181     279 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.6e-06
    PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgP.vleka.gd...laalltnl...eekdvlfideihrl 113
                  vl+yGpPG Gkt lak +a+   +++ +  g   ++k  g+   ++  + +l   ++  ++fidei  +
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTAAFISVVGSeFVQKYlGEgprMVRDVFRLareNTPAIVFIDEIDAI 271
                  9*******************9988765555441444422221113322223311133457888887655 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-06   0.00047      20     116 ..     158     268 ..     146     315 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.3e-06
    PF05673.8  20 eevdkvelddLvgiekqkeallenteqflkg.........lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkdlpkivellr...erperfilfvDDL 116
                   e   ++++++ g+++qk+++ e +e  l++          p + vL++G  GtGK  l ka+ n+++++ + ++  e  ++ l + p++v+ +    ++++  i+f+D +
  MMETSP0890-20130614|10208_1 158 MEKPDISYAQIGGLDSQKQEIREAVELPLTHfelykqigiDPPRGVLMYGPPGTGKTMLAKAVANSTTAAFISVVgsEFVQKYLGEGPRMVRDVFrlaRENTPAIVFIDEI 268
                  555667888888999999988887764333211111111257789*****************************977788999***999998764222778889****976 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   3.4e-06    0.0013      25      43 ..     203     221 ..     195     230 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.4e-06
   PF01078.16  25 lllvGppGsGKtmlakrlp 43 
                  +l++GppG+GKtmlak+++
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVA 221
                  89*************9875 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.9e-06    0.0014      50      89 ..     200     237 ..     148     255 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.9e-06
    PF06068.8  50 GravLlaGppgtGktalaiaiskelgedvpfvalsgsevy 89 
                   r+vL+ GppgtGkt la a++++ +    f++++gse+ 
  MMETSP0890-20130614|10208_1 200 PRGVLMYGPPGTGKTMLAKAVANSTT--AAFISVVGSEFV 237
                  499*******************9865..78*******975 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.5e-06    0.0017       2      29 ..     203     230 ..     203     297 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.5e-06
    PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrls 29 
                  vl+ G+pG+GK+ la+++++ +++ ++s
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTAAFIS 230
                  79*****************999976665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       6.6   2.4e+03      43      70 ..      47      74 ..      35      82 .. 0.77
   2 !   16.9   0.0   1.1e-05    0.0042       2      42 ..     203     244 ..     202     287 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 6.6
    PF13521.1 43 eealpweedllafaeavleaqleqeaaa 70
                  ++l++e+d+l+++e+ ++ ++++++++
  MMETSP0890-20130614|10208_1 47 YKQLEKERDFLDVQEQYVKDEIKNLKRE 74
                 4667877899999999999999888765 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.1e-05
    PF13521.1   2 ivitGgpstGKTtlleaLaar....gypvv.pEvarevleeklakg 42 
                  + + G+p+tGKT l++a+a+      ++vv  E++ ++l e    g
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSttaaFISVVgSEFVQKYLGE----G 244
                  5678***************7733334445555555555544....4 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.5e-06    0.0035      48      78 ..     201     231 ..     190     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.5e-06
   PF01695.12  48 enlvllGpsGvGKthlAialgveavraglsv 78 
                  + +++ Gp+G+GKt lA a++ +   a +sv
  MMETSP0890-20130614|10208_1 201 RGVLMYGPPGTGKTMLAKAVANSTTAAFISV 231
                  5799****************99877766655 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       2.6   9.8e+02      35      97 ..      48     108 ..      27     120 .. 0.50
   2 !   15.5   0.0   2.9e-05     0.011       5      74 ..     203     284 ..     200     322 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.6
    PF13173.1  35 inlddeelrkladpellelfleklke..kkkylflDEiqevpewedalkslvddgrnldviltGs 97 
                   +l++e+++   +   ++++ +++k+  ++ +    E+++++++  ++ ++ +   + ++ +t s
  MMETSP0890-20130614|10208_1  48 KQLEKERDFLDVQ---EQYVKDEIKNlkRELIRAKEEVKRIQSVPLVIGQFNEMI-DANFGITSS 108
                  2333333322111...133333332232333344556666666666665555544.445555555 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.9e-05
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe...llelflek.lkekkkylflDEiqev............p 74 
                  ++++Gp ++GKt+l+k +a++        +i++   e+ ++   e   + + ++++  ++   ++f+DEi  +            +
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTT----AAFISVVGSEFVQKYLGEgprMVRDVFRLaRENTPAIVFIDEIDAIatkrfdaqtgadR 284
                  6889**************97777....4555544444433222222344444444424557889******9986666666655553 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.54     2e+02     134     169 ..      48      83 ..       8     102 .. 0.67
   2 !   14.2   0.0   5.9e-05     0.022      19      94 ..     202     315 ..     171     407 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.54
    PF13086.1 134 eklekekkklkqekeklkkeskklkkeleearekie 169
                  ++leke++ l+ +++ +k+e+k+lk+el +a+e+++
  MMETSP0890-20130614|10208_1  48 KQLEKERDFLDVQEQYVKDEIKNLKRELIRAKEEVK 83 
                  223336677777777777777777777777777765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.9e-05
    PF13086.1  19 itliqGpPgtGKt........ttivelisql....lsek...........................seseakkkkrvLvcapsnaavDeilerlle.ldeegkkynpkivRignea 94 
                    l+ GpPgtGKt        +t +++is++    +  +                            e +a ++kr  + +    +v  il+ ll+ +d   +++n+k++   n+a
  MMETSP0890-20130614|10208_1 202 GVLMYGPPGTGKTmlakavanSTTAAFISVVgsefV--QkylgegprmvrdvfrlarentpaivfiDEIDAIATKRFDAQTGADREVQRILLELLNqMDGFDQTTNVKVIMATNRA 315
                  579**********77766666666666666655551..044555555566666666667788888888899999999999999999999999999988888999999999888888 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00026     0.097       3      22 ..     203     222 ..     201     227 .. 0.88
   2 ?    2.1   0.0       0.3   1.1e+02      76     116 ..     254     296 ..     234     318 .. 0.75
   3 ?   -1.6   0.0       4.4   1.6e+03      31      71 ..     339     378 ..     328     388 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00026
    PF05729.7   3 vilqGeaGsGKTtLlqklas 22 
                  v++ G++G GKT+L++ +a+
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVAN 222
                  8999************9986 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.3
    PF05729.7  76 llelperlLlilDglDelvsdlgq..lkekqpvrtlLselirk 116
                  l++ ++ +  ++D +D ++++         ++v+++L el+++
  MMETSP0890-20130614|10208_1 254 LARENTPAIVFIDEIDAIATKRFDaqTGADREVQRILLELLNQ 296
                  4556666777889999999854445666788999999999986 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 4.4
    PF05729.7  31 qdafklvFflslrelsrsknarsladlLfsqlpepaapvse 71 
                  + + +lvF  + +e++ s  +  l d++ ++ + +aa++s 
  MMETSP0890-20130614|10208_1 339 RRQRRLVFQACTAEMNLSDTV-DLEDYVNRPEKISAADISA 378
                  444689999999999999877.9999988877777777766 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.4e-05    0.0089      16      50 ..     200     233 ..     193     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.4e-05
    PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivrida 50 
                  p+ vl+ G+pG GKt la+++ +++ +  ++ + +
  MMETSP0890-20130614|10208_1 200 PRGVLMYGPPGTGKTMLAKAVANST-TAAFISVVG 233
                  899********************99.777776655 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   3.2e-05     0.012       6      24 ..     203     222 ..     201     234 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.2e-05
    PF13479.1   6 vliYGkpGiGKTslaktl.p 24 
                  vl+YG+pG+GKT lak +  
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVaN 222
                  799************98863 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   3.2e-05     0.012      10      33 ..     201     222 ..     194     233 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.2e-05
    PF13245.1  10 npllvvtGgPGtGKTttlaaiiaa 33 
                  +++l+  G+PGtGKT  la+++a 
  MMETSP0890-20130614|10208_1 201 RGVLM-YGPPGTGKT-MLAKAVAN 222
                  56666.8********.88888775 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   3.5e-05     0.013      47      99 ..      35      87 ..      31     100 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.5e-05
    PF11932.3 47 kladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqieeiee 99
                 +++++++++  +++ql++e + l+v+++ ++++++n ++el   +e++++i+ 
  MMETSP0890-20130614|10208_1 35 TMDEEMDDYYVKYKQLEKERDFLDVQEQYVKDEIKNLKRELIRAKEEVKRIQS 87
                 6789999999***************************************9986 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-05     0.016       1      64 [.     203     257 ..     203     281 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.2e-05
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                  +++yGp+g+GK++lak +a++         +   ++  + ++f+++Y g+   ++ D+ +   e
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANS---------TTAAFISVVGSEFVQKYLGEGPRMVRDVFRLARE 257
                  679**************4443.........3444455678888888888877777777776655 PP

>> PF05833.6  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.7   3.7e-05     0.014     367     421 ..      25      79 ..       8      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.7e-05
    PF05833.6 367 evtIpLdpekspsenAqkyYkkykKlkraveaveeqieetkeeleylesveaqle 421
                  ++ I+  pek+  e ++ yY kyk l++ ++ +  q +++k+e++ l+  + + +
  MMETSP0890-20130614|10208_1  25 GMDIKSPPEKTMDEEMDDYYVKYKQLEKERDFLDVQEQYVKDEIKNLKRELIRAK 79 
                  6778889***************************************987665555 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00042      0.16      23      47 ..     201     225 ..     186     241 .. 0.80
   2 ?    1.4   0.0      0.47   1.7e+02      96     143 ..     262     314 ..     252     322 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00042
                  S-EEEE-------HHHHHHHHHTST CS
   PF00158.21  23 ltvlitGesGtGKellAraiheask 47 
                    vl+ G  GtGK++lA+a+ ++++
  MMETSP0890-20130614|10208_1 201 RGVLMYGPPGTGKTMLAKAVANSTT 225
                  679****************987654 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.47
                  -EEEET-----H...HHHHHHHHHHH---BE------..EB-----EEEE-SS CS
   PF00158.21  96 tLfLDeigelpl...elQekLlrvlqegeverlGsek..eikvdvriiaatne 143
                  ++f+Dei  + +   ++Q+   r +q+  +e l + +   ++++v++i+atn+
  MMETSP0890-20130614|10208_1 262 IVFIDEIDAIATkrfDAQTGADREVQRILLELLNQMDgfDQTTNVKVIMATNR 314
                  66777776665411135655555566555555555432257789999999997 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.3   2.7e+03     119     136 ..       9      26 ..       6      62 .. 0.57
   2 ?   12.8   0.0   0.00017     0.064       4      93 ..     205     298 ..     202     309 .. 0.72
   3 ?   -2.5   0.0       8.8   3.3e+03      65      91 ..     384     410 ..     374     415 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 7.3
                  HHHHTTTSEEEEE--SS- CS
   PF03266.10 119 eevlssekpvlatvhrrk 136
                  ++vl+++   +a++h  +
  MMETSP0890-20130614|10208_1   9 NKVLRESMATVAVIHGGM 26 
                  556666666666666443 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00017
                  EE-------HHHHHHHHHH-...---EE--.EEE-----------EEE--.---EEE---TT...---SS--------HHHHHHHHHHHHHHHH CS
   PF03266.10   4 iTGepgvGKtTlvkkvlellksegvkvgGf.yteevreggrrigfdivdlasgergilarvk...gkreprvgkyvvnleefeelalpalrnal 93 
                  + G+pg+GKt l k v++   +  ++v G   ++++  +g r+  d+  la +++      +   +  ++r++  +    e+++++l+ l++++
  MMETSP0890-20130614|10208_1 205 MYGPPGTGKTMLAKAVANSTTAAFISVVGSeFVQKYLGEGPRMVRDVFRLARENTPAIVFIDeidAIATKRFDAQTGADREVQRILLELLNQMD 298
                  66************************99974688999*************98888777777633333333444333333447777777777665 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 8.8
                  ---SS--------HHHHHHHHHHHHHH CS
   PF03266.10  65 gkreprvgkyvvnleefeelalpalrn 91 
                  g + +r  +yvv  ++f++   +++++
  MMETSP0890-20130614|10208_1 384 GLQAVRENRYVVLPKDFDKAYKKQVNS 410
                  556778899999999999988777765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00056      0.21      36      55 ..     203     222 ..     196     239 .. 0.84
   2 ?    3.1   0.1      0.13        47     130     170 ..     248     288 ..     239     311 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00056
    PF13481.1  36 tllaGapgtGKStlalqlaa 55 
                  +l +G+pgtGK++la + a 
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVAN 222
                  588************98875 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.13
    PF13481.1 130 lerllaaieelegpdlvviDtlsrlvggdensnsdv.gavia 170
                  ++++ ++++e + p++v iD +++++    ++++++ ++v +
  MMETSP0890-20130614|10208_1 248 VRDVFRLARE-NTPAIVFIDEIDAIATKRFDAQTGAdREVQR 288
                  6788999999.99***********999877777775444433 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1         3   1.1e+03      26      65 ..      47      73 ..      31     127 .. 0.56
   2 ?   12.7   0.0   0.00029      0.11       4      77 ..     206     309 ..     203     352 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 3
    PF13238.1 26 lrdlakengleeevddkidtkeskeldedkldelldklee 65
                 +++l ke+++ + ++++             ++  +++l++
  MMETSP0890-20130614|10208_1 47 YKQLEKERDFLDVQEQY-------------VKDEIKNLKR 73
                 22222333333333333.............2222222222 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00029
    PF13238.1   4 tGtpGvGKtTlakeLaerl.......................gdvlrdlakengleeevddk......idtkeskeldedkldelldkleenes.elaegenvi 77 
                   G+pG+GKt lak+ a+ +                       +  ++ la en     + d+      + ++ +  +d++++ +ll+ l++ +  + + +  vi
  MMETSP0890-20130614|10208_1 206 YGPPGTGKTMLAKAVANSTtaafisvvgsefvqkylgegprmVRDVFRLARENTPAIVFIDEidaiatKRFDAQTGADREVQRILLELLNQMDGfDQTTNVKVI 309
                  6**************99987777777776666666666666633333333333333333333333355555555666666666666666665555445555555 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.8     0.052        19     155     201 ..      38      82 ..      10      87 .. 0.74
   2 ?    7.8   0.0    0.0093       3.4      10      39 ..     192     220 ..     183     310 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.052
    PF13476.1 155 krleelekeleeledekellekllqeeekekeleeleeeleelleel 201
                  ++++++  ++++le+e+++l+ +  e+  ++e+++l+ el +++ee+
  MMETSP0890-20130614|10208_1  38 EEMDDYYVKYKQLEKERDFLDVQ--EQYVKDEIKNLKRELIRAKEEV 82 
                  58888888888888888888854..3345667777777777766664 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0093
    PF13476.1  10 fkdqeidFskgltlItGpNGsGKTTildAi 39 
                  +k+  id  +g+ l +Gp G+GKT++ +A 
  MMETSP0890-20130614|10208_1 192 YKQIGIDPPRGV-LMYGPPGTGKTMLAKAV 220
                  555555555554.89************997 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.51   1.9e+02      61     116 ..      34      84 ..       8     100 .. 0.75
   2 ?    9.2   0.0    0.0014      0.51      15      37 ..     196     218 ..     168     232 .. 0.86
   3 ?    2.1   0.0       0.2        75     109     153 ..     253     304 ..     234     316 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.51
    PF06745.8  61 edlrenakslgwdlekleeegklaiidasesaeeeaeedleelieklaeaikeika 116
                  + + e++    +  ++le+e    ++d+ e+     ++++++l+++l +a +e+k 
  MMETSP0890-20130614|10208_1  34 KTMDEEMDDYYVKYKQLEKE--RDFLDVQEQYV---KDEIKNLKRELIRAKEEVKR 84 
                  56677777777777888888..45556665554...68888888888877777664 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0014
    PF06745.8  15 GipegrvvlitGepGtGKtifal 37 
                  Gi   r vl++G pGtGKt++a+
  MMETSP0890-20130614|10208_1 196 GIDPPRGVLMYGPPGTGKTMLAK 218
                  77778889************997 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.2
    PF06745.8 109 eaikeikakrvviDsitgl.......yeekeavaReilrqlvrvlkklgvTa 153
                  +  +e     v iD i+++       ++  + ++ +il +l++++ + ++T+
  MMETSP0890-20130614|10208_1 253 RLARENTPAIVFIDEIDAIatkrfdaQTGADREVQRILLELLNQMDGFDQTT 304
                  5566667778889999998765655445556678888889999998888886 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016     0.058     117     138 ..     203     224 ..     197     229 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
   PF01057.12 117 vwfyGpantGktnlaeaIakav 138
                  v++yGp+ tGkt+la+a a+ +
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANST 224
                  899***************9976 PP

>> PF04880.8  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   0.00019     0.071      24      56 ..      52      81 ..      35     111 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00019
    PF04880.8 24 dEkesLrvevqRLkDEarDLkqElivrerlrev 56
                 +E++ L v+ q +kDE+++Lk Eli r   +e 
  MMETSP0890-20130614|10208_1 52 KERDFLDVQEQYVKDEIKNLKRELI-R--AKEE 81
                 699*********************3.3..3332 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00031      0.11      18      51 ..     200     233 ..     190     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00031
    PF13604.1  18 drvavvqGpAGtGKttvlkalrealeaagkrvvg 51 
                   r +++ Gp+GtGKt + ka+++  +aa  +vvg
  MMETSP0890-20130614|10208_1 200 PRGVLMYGPPGTGKTMLAKAVANSTTAAFISVVG 233
                  5566778***************999998777776 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00044      0.16      22      42 ..     203     223 ..     193     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00044
   PF02562.11  22 vfaiGpaGtGKTylavalave 42 
                  v++ Gp GtGKT+la a+a +
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANS 223
                  7899***********999865 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       2.5   9.2e+02      71     117 ..      61      86 ..      27     128 .. 0.57
   2 ?    9.4   0.0    0.0019      0.69      20      51 ..     200     226 ..     190     243 .. 0.74
   3 ?   -0.2   0.0       1.6   5.8e+02     113     150 ..     254     299 ..     234     314 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.5
                  ..HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHHHH-- CS
   PF01637.13  71 eeeekkklakalgialpkaeleeilkkksklvflaleellealkkkg 117
                  e+++k+++                     k+ ++ l +++e++k+ +
  MMETSP0890-20130614|10208_1  61 EQYVKDEI---------------------KNLKRELIRAKEEVKRIQ 86 
                  22222222.....................333444444444444433 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0019
                  -SEEEEE--TT---HHHHHHHHHH-..---HH CS
   PF01637.13  20 nsiiviyGprrsGKTaLlkeileelkekgkrv 51 
                   + ++ yGp ++GKT L k +++ +      +
  MMETSP0890-20130614|10208_1 200 PRGVLMYGPPGTGKTMLAKAVANST-----TA 226
                  556899**************99988.....33 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.6
                  HHH----EEEEEETGGGGG.----.......---HHHHHHHHHHHH CS
   PF01637.13 113 lkkkgkkiiiiiDElqkli.lgln.......gakslvkeLlnlids 150
                  l ++++  i+ iDE+  +    ++       + ++++ eLln +d 
  MMETSP0890-20130614|10208_1 254 LARENTPAIVFIDEIDAIAtKRFDaqtgadrEVQRILLELLNQMDG 299
                  4555555888999999988444446666666666666666666665 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.36   1.3e+02     108     183 ..      29     103 ..       8     132 .. 0.73
   2 ?    8.5   0.1    0.0026      0.97       4      27 ..     203     226 ..     201     367 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.36
    PF12846.2 108 edeeeaalsralrelyeeegiatlaqrqayPtlgdllea.lreeeeelaeealarderreaaeelal...alerlldgal 183
                  ++  e ++++  +++y ++        ++   + d++e+ +++e++ l++e ++++e+ ++++++ l   ++++++d ++
  MMETSP0890-20130614|10208_1  29 KSPPEKTMDEEMDDYYVKYKQL-----EKERDFLDVQEQyVKDEIKNLKRELIRAKEEVKRIQSVPLvigQFNEMIDANF 103
                  5555677888888888888888.....33334778999989999988888888888877777777773335555555555 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0026
    PF12846.2   4 tlilGppGsGKSvllkklvlqlla 27 
                  +l++GppG GK++l+k+++    a
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTA 226
                  6899************99877666 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00041      0.15      22      43 ..     203     224 ..     193     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00041
                  EEEE-------HHHHHHHTS-S CS
   PF00931.17  22 vglvGmgGvGKttlakqvykde 43 
                  v ++G +G GKt lak+v ++ 
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANST 224
                  679****************985 PP

>> PF03528.10  Rabaptin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   0.00078      0.29      33      78 ..      36      81 ..      30      86 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00078
   PF03528.10 33 lketvsdYEtewnllqqErlqviqtqEaeeRe.vkkLrrlLrqanee 78
                 + e + dY  +++ l++Er      qE+  ++ +k+L+r L +a+ee
  MMETSP0890-20130614|10208_1 36 MDEEMDDYYVKYKQLEKERDF-LDVQEQYVKDeIKNLKRELIRAKEE 81
                 778889************975.56777777777***********965 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00062      0.23      18      78 ..     203     261 ..     190     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00062
   PF02367.12  18 vlLsGdlGaGKTtlvkglakglgvkgevtSPtftlvevyeegklklyHlDlYRledkeele 78 
                  vl+ G+ G+GKT+l+k++a+    +  +       v+ y  ++++++  D++Rl+ +++  
  MMETSP0890-20130614|10208_1 203 VLMYGPPGTGKTMLAKAVANSTTAA-FISVVGSEFVQKYLGEGPRMV-RDVFRLARENTPA 261
                  7899***************998665.333344566999998888888.599*999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       984  (0.0719719); expected 273.4 (0.02)
Passed bias filter:                      701  (0.0512727); expected 273.4 (0.02)
Passed Vit filter:                       129  (0.00943534); expected 13.7 (0.001)
Passed Fwd filter:                        37  (0.00270626); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.03u 0.43s 00:00:01.46 Elapsed: 00:00:01.38
# Mc/sec: 731.06
//
Query:       MMETSP0890-20130614|10210_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.1e-134  445.1   0.0     1e-133  444.8   0.0    1.1  1  PF00113.17 Enolase, C-terminal TIM barrel domain
    8.8e-59  197.0   0.2    1.6e-58  196.2   0.2    1.4  1  PF03952.11 Enolase, N-terminal domain
    7.3e-07   28.2   0.4    1.4e-06   27.3   0.3    1.4  1  PF07476.6  Methylaspartate ammonia-lyase C-terminus
     0.0014   18.4   0.0     0.0028   17.4   0.0    1.5  1  PF13378.1  Enolase C-terminal domain-like
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.21   12.0   0.0    1.6  1  PF01188.16 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00113.17  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.8   0.0  3.7e-137    1e-133       2     292 ..     144     438 ..     143     442 .. 0.95

  Alignments for each domain:
  == domain 1    score: 444.8 bits;  conditional E-value: 3.7e-137
   PF00113.17   2 vvlPvPalnvinGGshagnklalqefmilPtGassfkealrlGaevyhklksvikkkygksatnvGdeGGfaPnlqsnkealdlikeaiekaGykgkvkialdvassefykekdgkydldfkn..eesdkskkltseeladlykelvkkyPivsiedpfdeddweawkklteelgdkiqivGddltvtnpkrlkkaiekkaanalllkvnqiGsvtesleavklakkagygvvvshrsGetedtfiadlavglkaGqiktGapcrserlakynqllrieeelgekak...yaGkkf 292
                  ++lPvP +nvinGG+hagn+la+qef ++PtGa +fkea+ +G+ev+h+lk+vikkk+g +at +GdeGGfaP   +++++l++i+ea+ekaGy +k +++ldvassef  ++++ ydldfk+  e++d s +l+ +ela +y +l+++yPiv+iedpfd+ddw+ w+k+t++lg k+qivGddltvtn++ +k+ai +ka+nalllkvnqiGs++es++avk+ k+ag+gv+ shrsGeted++iadlavgl++G iktGapcr er akynqllrieeel+++a    y G+ f
  MMETSP0890-20130614|10210_1 144 MTLPVPCFNVINGGEHAGNALAFQEFFVIPTGAATFKEAMAIGCEVFHNLKKVIKKKFGGDATLIGDEGGFAPPC-TAESGLEMIMEAVEKAGYLDKCSVGLDVASSEFKVKDKDFYDLDFKSapENKDASMMLSGDELAAFYAKLADQYPIVTIEDPFDQDDWKNWSKVTASLGTKVQIVGDDLTVTNVDIIKRAIAEKACNALLLKVNQIGSISESIAAVKMVKQAGWGVMTSHRSGETEDNYIADLAVGLCTGEIKTGAPCRGERTAKYNQLLRIEEELSATAAkpiYIGSGF 438
                  68***********************************************************************97.5789******************************************83345678899*****************************************************************************************************************************************************98874233666655 PP

>> PF03952.11  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.2   0.2   5.7e-62   1.6e-58       1     132 []       3     133 ..       3     133 .. 0.99

  Alignments for each domain:
  == domain 1    score: 196.2 bits;  conditional E-value: 5.7e-62
                  S--EEE-EEEE-----EEEEEEEE----.-EEEE----------S--------TTTT-----HHHHHHHHHT---------TT-HHHHHHHHHHH---TT------TTT---HHHHHHHHHHH----HHHHH CS
   PF03952.11   1 kIekikareildSrGnpTvevevtlesgalgraavPsgaStgekealelrdgdkkrylgkgvekavenvneeiapaligldvedqkeiDkllieldgtenksklGanailavSlAvakaaAaakklplyryl 132
                  +I+ i++reildSrGnpTvev++ ++sg+++ra+vPsgaStg++ea+elrdg+ +r++gkgv+kavenvn++iapalig+d++dq+++D++++eldgt+nk  lGanail+vSlA+aka+A ak++ply+++
  MMETSP0890-20130614|10210_1   3 TISAIHGREILDSRGNPTVEVDIKTSSGEMFRASVPSGASTGAYEAVELRDGG-SRFMGKGVTKAVENVNKIIAPALIGMDTRDQETLDAKMLELDGTKNKGALGANAILGVSLAAAKAGAGAKGIPLYKHF 133
                  699**************************************************.****************************************************************************95 PP

>> PF07476.6  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.3   5.2e-10   1.4e-06     105     217 ..     291     398 ..     272     404 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.2e-10
                  TS-.EEEE-----SSHHHHHHHHHHHHHHHHH----EEEEE-TT--SHHHH.HHHHHTT--SEEE--GGG----HHHHHHHHHHHH---EEEE---TTS-HHHHHHHHHHHHHH- CS
    PF07476.6 105 pfk.lriegPldagskeeqiealaelreklkergvkvelvaDeWcntledi.kefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatr 217
                   ++ ++ie+P d+++ ++     +++    ++ g+kv++v D+ + t  di k+ ++++a++++ +k+  +G+i+++i av + k+ g g+++   + et+    +   v+l t+
  MMETSP0890-20130614|10210_1 291 QYPiVTIEDPFDQDDWKNW----SKV---TASLGTKVQIVGDDLTVTNVDIiKRAIAEKACNALLLKVNQIGSISESIAAVKMVKQAGWGVMTSHRSGETEDNYIADLAVGLCTG 398
                  4441467888877664433....333...3455899********9998885378899*************************************999999988777777777765 PP

>> PF13378.1  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06    0.0028       4      57 ..     329     384 ..     326     430 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1e-06
                  SSSHHHHHHHHHTT--SEEEEBTTTCH-HHHHHHHHHHHHHTT-EEEEBS.C.SHH CS
    PF13378.1   4 ltsrrdfrrlleagavdiiqpdlakvGGitealriaalaeayglpvaphs.m.esp 57 
                  +t++  ++r+++++a+  + +++ ++G i+e++ ++++ +++g+ v+      e+ 
  MMETSP0890-20130614|10210_1 329 VTNVDIIKRAIAEKACNALLLKVNQIGSISESIAAVKMVKQAGWGVMTSHrSgETE 384
                  57788899********88***************************99876344554 PP

>> PF01188.16  Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.8e-05      0.21      18      67 .]     271     325 ..     227     325 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.8e-05
                  E-TT-BHHHHHHHHHHHHGG...GSEEES-SSTTTHHHHHHHHHHS..SSEEEES CS
   PF01188.16  18 DanggwtleeAlrlaraled...iewiEePlppdddeglaelrrat..sipiaad 67 
                  Da + ++ +e  ++ ++l+d   i  iE+P+ +dd++ +++++++   +++i +d
  MMETSP0890-20130614|10210_1 271 DASMMLSGDELAAFYAKLADqypIVTIEDPFDQDDWKNWSKVTASLgtKVQIVGD 325
                  455556678888888889776656*********988******9877556667665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.89
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|10213_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-20   71.9   0.0    5.7e-20   70.9   0.0    1.6  1  PF00462.19 Glutaredoxin
     0.0019   18.2   0.0      0.005   16.9   0.0    1.7  2  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.059   13.2   0.0    1.6  1  PF04908.10 SH3-binding, glutamic acid-rich protein
      0.083   12.8   0.0       0.14   12.0   0.0    1.3  1  PF01655.13 Ribosomal protein L32


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.7e-23   5.7e-20       1      60 []      82     146 ..      82     146 .. 0.99

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 1.7e-23
                  EEEEE-.....STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHHSSBSSSEEEETTEEE CS
   PF00462.19   1 vvvftk.....ptCpyCkkakrlLdelgvkyeeidvdedpeireelkelsgwrtvPqvfidgehi 60 
                  v+v++k     p+C+++++++r+L+  gv+++ ++v+ed+ ir+ +k++s w+t+Pq++i+ge++
  MMETSP0890-20130614|10213_1  82 VMVYMKgtpsmPQCGFSQQVVRILHATGVEFASVNVLEDDGIRQGIKDFSQWPTIPQLYINGEFV 146
                  89*************************************************************97 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.8   6.1e+03      58      67 ..      64      73 ..      54      79 .. 0.61
   2 !   16.9   0.0   1.5e-06     0.005       3      59 ..      91     148 ..      90     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.8
                 ESHHHHHHHH CS
    PF13417.1 58 tdSlvIieyL 67
                  dS++I e +
  MMETSP0890-20130614|10213_1 64 EDSAAIKELI 73
                 4666665555 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.5e-06
                  --TTSHHHHHHHHHHHH----EEE----TTTT.HHHHHHH-TT--SSEEE----EEES CS
    PF13417.1   3 gspfSpyarkvrlaLeekglpyelvevtpgkk.rpellalnpkgkvPvLeddgevltd 59 
                  ++p + +++ v  +L+ +g+++  v+v  +++ r+ +++ +   ++P L+++ge + +
  MMETSP0890-20130614|10213_1  91 SMPQCGFSQQVVRILHATGVEFASVNVLEDDGiRQGIKDFSQWPTIPQLYINGEFVGG 148
                  6899***********************999988999****************998765 PP

>> PF04908.10  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.059      20      91 ..      98     160 ..      80     167 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
                  HHHHHHHCTTTT---EEEETTT-HHHHHHHHHHS.-CCCS---TT--S-EEEETTEE---HHHHHHHHCTT- CS
   PF04908.10  20 qqevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakeent 91 
                   q+v+riL a  +ef +v++ +d+  r+ +++ +         + p+ Pq++ + e++G  d   +a  +  
  MMETSP0890-20130614|10213_1  98 SQQVVRILHATGVEFASVNVLEDDGIRQGIKDFS---------QWPTIPQLYINGEFVGGCDIVTQAFQSGE 160
                  478***********************99999655.........57888999999999998888777766555 PP

>> PF01655.13  Ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.2e-05      0.14      27      69 ..      79     120 ..      75     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.2e-05
                  --TTT-----------------TTT--------EEEEESSGGG CS
   PF01655.13  27 dskvRrrfkgkpkmpkiGYgspkkvrglhpsGfkevlvhnvkd 69 
                  ++kv   +kg+p+mp+ G+ s++ vr lh +G++   v+ ++d
  MMETSP0890-20130614|10213_1  79 EHKVMVYMKGTPSMPQCGF-SQQVVRILHATGVEFASVNVLED 120
                  56777889***********.6789*********9988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:01.01
# Mc/sec: 431.82
//
Query:       MMETSP0890-20130614|10214_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-07   29.2   1.1    6.5e-07   28.8   0.8    1.2  1  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.15   11.7   0.4        1.1    8.9   0.1    2.3  2  PF08129.6  Alpha/beta enterocin family


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.8   9.6e-11   6.5e-07       7      91 ..      33     114 ..      29     119 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 9.6e-11
                  HHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---.GGGG---HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   7 ksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGi.rglyrGllpnllrvvpaaaikfvtyetlkkl 91 
                   sl++G+iAg++aa++ +P d++  ++     +++ +  +++  +++i+ e G+ +   +Gl+++++ + + +a +f++++ + + 
  MMETSP0890-20130614|10214_1  33 VSLTSGVIAGVAAAIISHPADTMLSKIN----KGGGEGGSMFTRMGNIVAETGLwKLCTQGLGARCVMIGSLTAGQFGIFDIVMNA 114
                  6899************************....8888999999999********968889*********************998765 PP

>> PF08129.6  Alpha/beta enterocin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00016       1.1      18      41 ..      66      91 ..      54      95 .. 0.79
   2 ?    0.1   0.0     0.088     6e+02      19      33 ..     105     119 ..     100     122 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00016
    PF08129.6 18 GesvfskiGnavGPaayWil..kGlG 41
                 G s+f+++Gn v  +  W l  +GlG
  MMETSP0890-20130614|10214_1 66 GGSMFTRMGNIVAETGLWKLctQGLG 91
                 669***************88445676 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.088
    PF08129.6  19 esvfskiGnavGPaa 33 
                    +f  + navG + 
  MMETSP0890-20130614|10214_1 105 FGIFDIVMNAVGASK 119
                  56899999***9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 451.08
//
Query:       MMETSP0890-20130614|10218_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-27   96.2   0.6    2.5e-27   95.7   0.4    1.2  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.4   1.8e-31   2.5e-27       2     182 ..      33     241 ..      32     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 1.8e-31
                  HHHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHHTT..............TTCGCS-SCCEEEECCCCE----..-S-B..-----EEEEEEEEEETTEEEEEEEEEE--GHH-........HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E.E--S-------.-SS-S---SS.......TT---B-----EEEE CS
   PF00557.19   2 lirkAgriaaaaleavlreikpgvterelaalieaalkreg..............akgqafppivasgenaallhytp..ndrv..lkdgdlvlldvgaeydgyasditrTvvvgftpe........qrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlseffphglGHgvglevhdepsvsr.......kgrgrkleegmvfti 182
                  ++r+A++ia+ al+ ++ ++k g+++ +l+++++   ++++              +kg+afp  ++++ n+++ h+ p  +d++  lk+gd+v+ dvg+++dgyas +++T+++  ++e        q++++ a+  a e ai++++pG+t s+i++a+ kv++++G s  ++  l H + + v d   v         k ++ ++e ++v++i
  MMETSP0890-20130614|10218_1  33 KYREAAKIANLALQGIILQAKAGTKVVDLCKFGDSV-INQKcaaiytkkvkgkiiEKGIAFP--TCISLNECASHFCPleSDTQivLKAGDMVKADVGCHVDGYASVAAHTFIIP-SEEenanisgpQADVMSAAHIAAEVAIKLLQPGNTNSQITQAIAKVADSYGVS-AVAGVLSHRMKRFVIDGNKVIIlkedvdqKVETFTFETNEVYSI 241
                  8*************99655***************87.333334444555666999*******..************77655555579*************************886.33234567788**************************************9997.66889999999855555332111122222225666777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.86
# Mc/sec: 1117.37
//
Query:       MMETSP0890-20130614|10216_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0045   16.3   0.1     0.0091   15.4   0.0    1.4  1  PF00558.14 Vpu protein
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.18   11.2   0.0    1.2  1  PF04156.9  IncA protein
       0.15   11.9   0.0       0.32   10.9   0.0    1.4  1  PF13800.1  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> PF00558.14  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-06    0.0091       7      43 ..     632     670 ..     627     680 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2e-06
   PF00558.14   7 iglialivalii..aivvWtivyreykkikkqkeierli 43 
                   glialiv lii   i+v + vy  + k+++q ei ++ 
  MMETSP0890-20130614|10216_1 632 AGLIALIVILIIlfIICVGGGVYFMFEKRREQDEIRQRR 670
                  68999999888877899******************8864 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     4e-05      0.18      36      71 ..     632     667 ..     630     693 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4e-05
    PF04156.9  36 lisallgivliAlgvvLlalgllllllkapvqseed 71 
                  +  ++l+++li+l+++++++g+++ ++k+++q e +
  MMETSP0890-20130614|10216_1 632 AGLIALIVILIILFIICVGGGVYFMFEKRREQDEIR 667
                  5678999***********************998644 PP

>> PF13800.1  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.1e-05      0.32      18      53 ..     634     669 ..     624     675 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.1e-05
    PF13800.1  18 vlsvil.llliviililisllyygvakskesnklrev 53 
                  ++++i+ l++++ii++    +y+ ++k+ e++++r++
  MMETSP0890-20130614|10216_1 634 LIALIViLIILFIICV-GGGVYFMFEKRREQDEIRQR 669
                  5666662555566566.77789999999889988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.29u 0.41s 00:00:01.70 Elapsed: 00:00:01.32
# Mc/sec: 1474.12
//
Query:       MMETSP0890-20130614|10219_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-12   44.8   1.8      4e-06   26.6   1.8    2.3  2  PF00249.26 Myb-like DNA-binding domain
    9.2e-12   44.7   0.4    3.9e-06   26.7   0.2    2.6  2  PF13921.1  Myb-like DNA-binding domain
     0.0084   15.6   0.3      0.012   15.0   0.2    1.2  1  PF04702.7  Vicilin N terminal region


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   1.8   8.9e-10     4e-06       2      46 ..      44      88 ..      43      90 .. 0.95
   2 !   15.3   0.0   2.9e-06     0.013      18      46 ..     117     148 ..      99     150 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 8.9e-10
                 TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHH CS
   PF00249.26  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                 ++W ++Ed +l+ a +++   +Wk+Ia+++g +R   qc  rw +
  MMETSP0890-20130614|10219_1 44 KKWEAWEDTRLIVAAHRYARCQWKLIAKEIGHHRNHMQCLQRWKS 88
                 68*****************************99**********75 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.9e-06
                  HTTS-.....HHHHHHHCTTTS-HHHHHHHHHH CS
   PF00249.26  18 qlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                    Gg     +Wk Ia++++  R++  + ++w++
  MMETSP0890-20130614|10219_1 117 TNGGTisklNWKEIAALLP-FRSGPAVEEYWYN 148
                  4555588889*********.************8 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   8.6e-10   3.9e-06       1      56 [.      46     103 ..      46     107 .. 0.86
   2 !   16.8   0.0   1.1e-06    0.0048      10      44 ..     112     151 ..      99     196 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 8.6e-10
    PF13921.1   1 WtdeEdeiLlklveeygn.dWseIaeelg.rRtplacqdrwknkLrpkisrapwtkee 56 
                  W + Ed +L+    +y + +W++Ia+e+g +R + +c +rwk+ + p + ++++t+++
  MMETSP0890-20130614|10219_1  46 WEAWEDTRLIVAAHRYARcQWKLIAKEIGhHRNHMQCLQRWKSIVEPALMDEAFTEAD 103
                  7777999998888888778*********77*************778988888888875 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.1e-06
    PF13921.1  10 lklveeygn.....dWseIaeelgrRtplacqdrwknkLr 44 
                  +++ +++g      +W+eIa  l +R+  a+ + w+n+L 
  MMETSP0890-20130614|10219_1 112 QSILKTNGGtisklNWKEIAALLPFRSGPAVEEYWYNELA 151
                  555666765677789**********************883 PP

>> PF04702.7  Vicilin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   2.7e-06     0.012      15      82 ..      17      87 ..       6      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.7e-06
    PF04702.7 15 dCrrrCeleergereqqkCeerckeqlkeeeeqqrqreedpqrryeecqercqree...erkrqtcqqrce 82
                 d  +r  + +++++e ++Ce+  k + k  e  +  r     +ry  cq +   +e   +r++ +c qr +
  MMETSP0890-20130614|10219_1 17 DQSKRSFHVTSNNKENDQCEKAVKFEPKKWEAWEDTRLIVAAHRYARCQWKLIAKEighHRNHMQCLQRWK 87
                 55678888899*****************9999999999999**********99999877788888988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.74
# Mc/sec: 722.15
//
Query:       MMETSP0890-20130614|10220_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00094   18.6   0.5       0.57    9.7   0.0    3.3  3  PF01978.14 Sugar-specific transcriptional regulator TrmB
     0.0018   18.4   0.3        8.2    6.7   0.0    3.6  3  PF03448.12 MgtE intracellular N domain
  ------ inclusion threshold ------
      0.094   12.8  11.4       0.14   12.3   0.1    3.5  3  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF01978.14  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17   7.6e+02       8      39 ..     116     147 ..     114     149 .. 0.75
   2 !    9.7   0.0   0.00012      0.57      21      64 ..     193     236 ..     191     238 .. 0.84
   3 !    4.7   0.0    0.0048        22      10      40 ..     354     384 ..     351     386 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.17
   PF01978.14   8 eyEakvYlaLlkkgpatadeiaeelgvprskv 39 
                    +a + +aL +++pa+a+ ia +l+   s+v
  MMETSP0890-20130614|10220_1 116 RLDAGAVAALSELEPAEAEAIAARLEQAGSSV 147
                  56677778888999999999999987666665 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00012
   PF01978.14  21 gpatadeiaeelgvprskvyevLrsLekkGlverekgrpklYka 64 
                  ++++a+ ia  +++p  +++ +L+ L +kG  +++  + ++ ka
  MMETSP0890-20130614|10220_1 193 RRLDASAIAALAELPSETAQAILEELASKGTGKVRNPSAYVVKA 236
                  57899*************************88777666665555 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0048
   PF01978.14  10 EakvYlaLlkkgpatadeiaeelgvprskvy 40 
                  ++k+ +aLl++ p +a +i  el++ r++++
  MMETSP0890-20130614|10220_1 354 DSKAAAALLALPPHRAVQILTELKRKRATIR 384
                  6677789**********************97 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.061   2.8e+02      66      86 ..     121     141 ..     108     146 .. 0.60
   2 !    6.7   0.0    0.0018       8.2      66      95 ..     199     228 ..     193     233 .. 0.71
   3 !    5.3   0.0    0.0048        22      51      77 ..     354     380 ..     346     401 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.061
                  HHHHHCCCHCCHHHHHHHCS- CS
   PF03448.12  66 avdlleelpeekveellsald 86 
                  av  l+el++ ++e++ ++l+
  MMETSP0890-20130614|10220_1 121 AVAALSELEPAEAEAIAARLE 141
                  445556666666666655554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0018
                  HHHHHCCCHCCHHHHHHHCS-CCCHHHHHC CS
   PF03448.12  66 avdlleelpeekveellsaldeeereeiee 95 
                  a+  l elp e+++++l++l ++   ++++
  MMETSP0890-20130614|10220_1 199 AIAALAELPSETAQAILEELASKGTGKVRN 228
                  556678888888888888887776666665 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0048
                  HHHHHHHHCTS-HHHHHHHHCCCHCCH CS
   PF03448.12  51 deelaelleeldsDdavdlleelpeek 77 
                  d+++a++l  l++  av++l el+ ++
  MMETSP0890-20130614|10220_1 354 DSKAAAALLALPPHRAVQILTELKRKR 380
                  456666666777777777777776554 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.5      0.19   8.6e+02      18      53 ..     119     160 ..     114     173 .. 0.63
   2 ?   12.3   0.1     3e-05      0.14      17      62 ..     196     241 ..     191     257 .. 0.88
   3 ?    5.4   0.7    0.0043        20      14      75 ..     320     380 ..     308     411 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.19
    PF13646.1  18 aaaieaLgqlgseealpaLlelL......kdsdpevRraAae 53 
                  a a+ aL++l+ +ea ++  +l       ++++++v ra+ +
  MMETSP0890-20130614|10220_1 119 AGAVAALSELEPAEAEAIAARLEqagssvRNPSAYVHRAVNN 160
                  568889998888776443333322233335566666666655 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3e-05
    PF13646.1  17 raaaieaLgqlgseealpaLlelLkdsdpevRraAaeaLgklgdpe 62 
                   a+ai aL++l se+a ++L el++    +vR   a++  ++g+ +
  MMETSP0890-20130614|10220_1 196 DASAIAALAELPSETAQAILEELASKGTGKVRNPSAYVVKAVGNAR 241
                  579*****************************99999999998755 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0043
    PF13646.1  14 pevraaaieaLgqlgseealpaLlelLkdsdpevRraAaeaLgklgdpealpaLlkllddde 75 
                  p +   a+ a     +++a+++ ++ +++s  ++  +Aa aL +l   +a++ L++ l++  
  MMETSP0890-20130614|10220_1 320 PTTTSVAASATQSQIDSTAMDTARAWADSSARSLDSKAAAALLALPPHRAVQILTE-LKRKR 380
                  56666677777777778889999999999999999999999999999999999998.33332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       995  (0.0727765); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:01.27
# Mc/sec: 1018.92
//
Query:       MMETSP0890-20130614|10221_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-88  295.6   2.7    2.8e-87  292.5   1.9    1.9  1  PF01960.13 ArgJ family


Domain annotation for each model (and alignments):
>> PF01960.13  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5   1.9   2.1e-91   2.8e-87      11     388 .]      30     435 .]      20     435 .] 0.90

  Alignments for each domain:
  == domain 1    score: 292.5 bits;  conditional E-value: 2.1e-91
                  XXXXXXXEEEEEXSSXBEEEEEEBXXTTXXXHHHHHHHHC.TXXXBXXXEEEESBXXXXXXXXXXHHHHHHHHHHHHHXXXXXXXXXEEEEXXXXXXXXHHHHHHHHTTXXXXXXXXXXHHHHHHTXSSXSSXBXXXEEX...XX.XEEEXEEEXXXXXXXXBB--EEEEEESS---H.HHHHHHHHHHHHHTGGGB-SSS---SS-EEEEEE-----------.......HHHHHHHHHHHHHHHHHH------SEEEEEEE---SHHHHHH---TTTT-HHHHHHH---------HHHH----.....TTS-.TTT-BEE----EEES------..TTHHHHHHHH--.......................-EEEE-EE-.......SS----EEEB--------HHHHHHS-- CS
   PF01960.13  11 kkkkkkDlalivsekpasaagvfTtnkvkAapvllskellakkgkaralvvnsgnANactGeeGledaeemaelvaealgikeeevlvasTGvIGeklpiekieagieklveklskesleeaaeaimTTDtvpKeaaveveiegkkvtiagiaKGsGmiaPnmaTmLafittDaaisk.ellqkllkeavdrsFnritvDgdtSTnDtvlvlAngaagneeieeeskeleefeealeevaeeLakqivrDGEGatklieveVkgAkseeeAkkvaksianSpLvKtaifgedpNwGrilaAvGks....gaeld.pekvsislgevkvvekgepve..fdeekakeilke.......................eeveievdL.......geGeaeatvwtcDLsydYvkiNaeYrt 388
                  k++ +   ++++se++++ a+vfT+n++++apv++ k+l ++++ +r++++n + +N++ ++ G ++a ++++++a++lg +++ ++++sTGvIG  lp ++iea+i++  e  +++s+ e+aeaimTTD +pK a++++  +++++ ++g+aKG+Gmi+Pn++TmL fi+tDa++ + +++q++lk+a+dr+  ri+vDgd ST+D++++l++g+++ ++       +++f+ al+ev+++La++ivr GEG +++i+v+V+g ++++ A+++++ ++n pL+K+a++g+dpN Gr++a +G+     + +l+  ++ ++s+ge  ++e+g+      +e++++++lk+                       + ve ++++       ++ +++  v ++DL+y+Yv+ Na+Yr+
  MMETSP0890-20130614|10221_1  30 KAAMQVSALVLTSEQTTNWAAVFTRNALCGAPVRVGKKLHSNQTPVRGIIANNKVSNVG-APGGEDRALRVCKAAANKLGESNDAFIPSSTGVIGWGLPATEIEAAISNSLEVSTNASAVELAEAIMTTDRYPKVASANI--HDSDAVVVGVAKGAGMIEPNLGTMLVFIATDAKLPSrDTIQNALKSACDRTLSRISVDGDESTSDMAILLSSGTKSIPS-------INAFQVALDEVCTQLAHHIVRNGEGTNHVIRVTVSGLEDSAFAHDLGRFVVNGPLLKSAVAGNDPNVGRLVARIGQFlgsrNHDLNlLNQCQVSIGEDLIFEQGAFCLdpEKEKRLAAHLKRaqlgpsdiglpgksaglpypphpHCVEFRIQFsslssseSANREDIVVLGSDLTYQYVRENADYRS 435
                  555566678899****************************9999*************99.699*************************************************88888*****************887765..78889*****************************752689*********************************986555.......567************************************************************************9743323355535899*************97654567999******9*********************996666666664445443334567889****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.99
# Mc/sec: 1052.94
//
Query:       MMETSP0890-20130614|10223_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0072   16.2   0.1       0.11   12.4   0.0    2.2  2  PF13474.1 SnoaL-like domain
  ------ inclusion threshold ------
      0.041   14.1   0.1      0.084   13.1   0.0    1.6  2  PF12680.2 SnoaL-like domain


Domain annotation for each model (and alignments):
>> PF13474.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.033   2.3e+02       7      34 ..      38      65 ..      35      91 .. 0.79
   2 !   12.4   0.0   1.6e-05      0.11      55     120 ..     135     197 ..     109     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.033
    PF13474.1  7 afyeaaeegDldallalfaddvvfigtg 34
                 a  +a++ +D+++ l ++ d v+ ig  
  MMETSP0890-20130614|10223_1 38 AQSKAITFADVQEALRIWCDGVIEIGQV 65
                 556788999************9999954 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.6e-05
    PF13474.1  55 ktepisfeledvrvtvsgdvawvteeldlqakadgseaegqvrgtgvl.rktdggWkivhyhlSvpa 120
                   + +i+f ++ v +t++  +a+ + +++    +  + +e +v  t+ + r  dg+ kiv +h+Svp+
  MMETSP0890-20130614|10223_1 135 PWSKIRFDIHGVFITSDCATAMGHYMFT----DANTGSEVRVEYTFQYvRGPDGKLKIVLHHSSVPY 197
                  4678999999999999999999998873....3344455566555554156688************8 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   7.4e+03      51      63 ..      56      68 ..      34      83 .. 0.58
   2 ?   13.1   0.0   1.2e-05     0.084      37      99 ..     113     186 ..      95     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.1
                 ECEEEEEEEEESS CS
    PF12680.2 51 pdlrfevedviad 63
                  d  +e+ +v+++
  MMETSP0890-20130614|10223_1 56 CDGVIEIGQVYSE 68
                 3555555555444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.2e-05
                  HHHHHHHTTHHH..........CEECEEEEEEEEESSTTEEEEEEEEE-EESBS--EEEEEEEEEEEE.----E CS
    PF12680.2  37 ealraffralla..........afpdlrfevedviadgdrvvvrwtvtgtipptgrgvtvrgvdvfrv.edGkI 99 
                  ++   +f+++ +           ++ +rf+++ v+   d +++ ++++ t + tg++v+v+++  +    dGk 
  MMETSP0890-20130614|10223_1 113 DEAVSYFAGAGKysedkgfaiqPWSKIRFDIHGVFITSDCATAMGHYMFTDANTGSEVRVEYTFQYVRgPDGKL 186
                  555555555555555555556678999*****************999999**************9999889964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:00.98
# Mc/sec: 489.05
//
Query:       MMETSP0890-20130614|10225_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-90  301.2   0.0    4.3e-90  301.1   0.0    1.0  1  PF00701.17 Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> PF00701.17  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.1   0.0   3.1e-94   4.3e-90       3     288 ..       8     294 ..       6     295 .. 0.98

  Alignments for each domain:
  == domain 1    score: 301.1 bits;  conditional E-value: 3.1e-94
                  ---EEB----EET..TEE-HHHHHHHHHHHHH------B-------GGGS-HHHHHHHHHHHHHHH-------------SHHHHHHHHHHHHH------EEE---SS-------HHHHHHHHHC-SS-BEEEE-----S----HHHHHHHHH-TTB---EE----THHHHHHHHH----S--B------------------EESGGGT-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTSSSTT---HHHHHH---------TT-----HHHHHHHHHHHHH- CS
   PF00701.17   3 eglitalvtpfde.dgkldeealrkliefliekGvdglvvaGttGEsatlsteekeqlieiaveaakgrvpviagvGsnstkeAiklaqkaeelGadgvlavtPYynkpsqeglyqhfkaiaeatdlpvilYnvpsrtgvdlspetverLaelenvvgvKeavgdlervekikkevgedlvilsGddelllsalklGadgvisvtsniapklmrqlvkalkngdlataaelnekllplikilfaepnvilvkaalkllGlvvgalRlPltplseeekeeleallkal 288
                   g+++alvtp+++  +++d  al++l+e+++e+G+ g+v++GttGE++t+ tee++++++++ ++++g+ p+i g+G   t   i+ +++a++ Gad+ l+vtPYy+kp q+ l  hf aia+a dlp+ilYnvp+rt+ dl+ etv++L++ e ++g+K+a+g+l+rv ++++ +g d+++lsG+d+l l+++ +G+dgvisvt+niap++m++l+  +k+g++++a el+  l+ l+++lf+e n+i+vk al+++G  ++ +RlPl++l++e++++le++++ +
  MMETSP0890-20130614|10225_1   8 GGSLVALVTPMNPgTNAIDHGALKSLLEWHLESGTAGIVALGTTGEASTMTTEERAAVLKTTTDTIGGKMPLIVGTGTIDTGVTIETTKRAKDCGADASLVVTPYYVKPPQRALLAHFTAIANAVDLPMILYNVPGRTASDLKTETVAQLSTHERIIGIKDATGELDRVPHLRELCGADFLLLSGEDALSLDFVLAGGDGVISVTANIAPAQMQELMLTAKSGNTDKAIELDSPLQGLHDKLFIEANPIPVKFALARMGRIQSGIRLPLVELAKEYHPALESAISDA 294
                  699*********84578*************************************************************************************************************************************************************************************************************************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 1085.62
//
Query:       MMETSP0890-20130614|10229_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       849  (0.0620977); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 558.01
//
Query:       MMETSP0890-20130614|10231_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-51  169.3   0.2    3.2e-10   40.1   0.0    4.9  6  PF13637.1  Ankyrin repeats (many copies)
    8.2e-41  138.1   0.1      1e-18   67.3   0.1    3.5  3  PF12796.2  Ankyrin repeats (3 copies)
    1.7e-37  125.2   0.0    2.7e-06   26.7   0.0    6.4  6  PF00023.25 Ankyrin repeat
    4.5e-35  116.0   0.0    1.1e-05   25.0   0.0    6.7  7  PF13606.1  Ankyrin repeat
    6.1e-26   89.7   0.3    6.3e-07   29.3   0.0    5.8  6  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.02   14.3   0.0        5.5    6.3   0.0    3.2  3  PF03158.8  Multigene family 530 protein


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.1e-06    0.0048       8      53 ..      22      70 ..      18      71 .. 0.86
   2 !   31.9   0.0     5e-11   1.1e-07       4      53 ..      54     103 ..      51     104 .. 0.88
   3 !   33.8   0.1   1.3e-11     3e-08       3      54 .]      86     137 ..      84     137 .. 0.96
   4 !   40.1   0.0   1.4e-13   3.2e-10       1      54 []     117     170 ..     117     170 .. 0.96
   5 !   40.0   0.0   1.5e-13   3.4e-10       2      54 .]     151     202 ..     150     202 .. 0.93
   6 !   32.4   0.0   3.6e-11   8.2e-08       3      53 ..     184     235 ..     182     236 .. 0.94

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.1e-06
    PF13637.1  8 aaisgrlelvklLlek.gid...inrtdesGntaLhiAalrgnieilklL 53
                 a+ +g+l+ +k +++   i+   inr+ + G ta+  A+++ +ie++k+L
  MMETSP0890-20130614|10231_1 22 ACFDGNLDEAKRIVSDtPIEeldINRV-IHGGTAFAAAVQNSHIEVVKYL 70
                 8999**********6535556669999.66*******************9 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 5e-11
    PF13637.1   4 aLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  a+  a++ +++e+vk+L + g+d      +G t++ iA++rgn++i+++L
  MMETSP0890-20130614|10231_1  54 AFAAAVQNSHIEVVKYLAALGADMEIPIHDGATPIFIACYRGNMDIVRFL 103
                  5556666999*************8777789*******************9 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 1.3e-11
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  t+++ a++ g++++v++L+++ +++ + +++Gnt++ iAa++ +++i++ Ll
  MMETSP0890-20130614|10231_1  86 TPIFIACYRGNMDIVRFLCSQMVNLEKPNANGNTPFAIAAQHRRLDIAEILL 137
                  89***********************************************997 PP

  == domain 4    score: 40.1 bits;  conditional E-value: 1.4e-13
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  g+t++  aa++ rl++++ Ll++g++i  ++++G t++ +A++ gn++++k+L+
  MMETSP0890-20130614|10231_1 117 GNTPFAIAAQHRRLDIAEILLQHGVNIAPVNKKGSTPFFFACQEGNLDVVKFLV 170
                  5899999*********************************************96 PP

  == domain 5    score: 40.0 bits;  conditional E-value: 1.5e-13
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                   t+++ a++ g+l++vk+L+ +g+d+  t  ++G +++h A++rg+++++ +L+
  MMETSP0890-20130614|10231_1 151 STPFFFACQEGNLDVVKFLVRNGADV--TmGKNGISPFHMACYRGHLDVVTYLV 202
                  699*****************99***6..557*********************96 PP

  == domain 6    score: 32.4 bits;  conditional E-value: 3.6e-11
    PF13637.1   3 taLhyaaisgrlelvklLlek.gidinrtdesGntaLhiAalrgnieilklL 53 
                  +++h+a++ g+l++v +L+   ++d++++d+sG+t+L +A ++g  e++++L
  MMETSP0890-20130614|10231_1 184 SPFHMACYRGHLDVVTYLVVEvDVDPHAVDGSGRTPLEVARRAGKEEVIRFL 235
                  799****************555****************************99 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   0.00029      32      86 ..      21      78 ..       6      81 .. 0.85
   2 !   67.3   0.1   4.5e-22     1e-18       3      86 ..      57     144 ..      55     147 .. 0.96
   3 !   60.2   0.0   7.1e-20   1.6e-16       2      86 ..     155     243 ..     154     246 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
    PF12796.2 32 lAaeagnleivklLle....agadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86
                  A+  gnl+ +k +++     + d+n    +g t+  +Av+n h+e+vk+L   gad +
  MMETSP0890-20130614|10231_1 21 TACFDGNLDEAKRIVSdtpiEELDINRV-IHGGTAFAAAVQNSHIEVVKYLAALGADME 78
                 6888899999999999777777788765.7*************************9975 PP

  == domain 2    score: 67.3 bits;  conditional E-value: 4.5e-22
    PF12796.2   3 lAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                   A++n ++e+vk+L + gad+++    g tp+++A+ +gn +iv++L+++  +++  +++gntp  +A+++++l+++++Ll++g ++ 
  MMETSP0890-20130614|10231_1  57 AAVQNSHIEVVKYLAALGADMEIpihdGATPIFIACYRGNMDIVRFLCSQMVNLEKPNANGNTPFAIAAQHRRLDIAEILLQHGVNIA 144
                  69****************************************************9999**************************9986 PP

  == domain 3    score: 60.2 bits;  conditional E-value: 7.1e-20
    PF12796.2   2 hlAaengnlelvklLlekgadvdlget...pLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                  ++A++ gnl++vk+L+ +gadv++g++   p h A+ +g+l++v +L+     d+ a d +g+tpL +A r+g+ e++++L + ++d++
  MMETSP0890-20130614|10231_1 155 FFACQEGNLDVVKFLVRNGADVTMGKNgisPFHMACYRGHLDVVTYLVVeVDVDPHAVDGSGRTPLEVARRAGKEEVIRFLEQLDSDKQ 243
                  68**********************555566****************965267899**************************99988876 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     4e-05      0.09       2      28 ..      51      77 ..      50      80 .. 0.88
   2 !   25.2   0.0   3.5e-09     8e-06       1      31 [.      83     113 ..      83     115 .. 0.92
   3 !   24.1   0.0     8e-09   1.8e-05       1      31 [.     116     146 ..     116     148 .. 0.92
   4 !   26.7   0.0   1.2e-09   2.7e-06       2      29 ..     150     177 ..     149     179 .. 0.95
   5 !   22.0   0.0   3.7e-08   8.4e-05       1      22 [.     181     202 ..     181     213 .. 0.88
   6 !    6.3   0.0    0.0036       8.2       2      21 ..     216     235 ..     215     238 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-05
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdl 28
                 G T+   A+++ ++evvk+L   GAd 
  MMETSP0890-20130614|10231_1 51 GGTAFAAAVQNSHIEVVKYLAALGADM 77
                 6688889******************97 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 3.5e-09
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  dG TP  +A++rgn+++v++L sq  +l   
  MMETSP0890-20130614|10231_1  83 DGATPIFIACYRGNMDIVRFLCSQMVNLEKP 113
                  8***********************9998765 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 8e-09
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  +G+TP  +Aa++ +l++++ Ll++G ++  +
  MMETSP0890-20130614|10231_1 116 NGNTPFAIAAQHRRLDIAEILLQHGVNIAPV 146
                  8*************************99655 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 1.2e-09
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdln 29 
                  G TP   A++ gnl+vvk+L+ +GAd++
  MMETSP0890-20130614|10231_1 150 GSTPFFFACQEGNLDVVKFLVRNGADVT 177
                  99************************97 PP

  == domain 5    score: 22.0 bits;  conditional E-value: 3.7e-08
                  TSCBHHHHHHHTTHHHHHHHHH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLl 22 
                  +G +P H+A++rg+l+vv++L+
  MMETSP0890-20130614|10231_1 181 NGISPFHMACYRGHLDVVTYLV 202
                  79*******************7 PP

  == domain 6    score: 6.3 bits;  conditional E-value: 0.0036
                  SCBHHHHHHHTTHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklL 21 
                  G+TPL +A + g  ev+++L
  MMETSP0890-20130614|10231_1 216 GRTPLEVARRAGKEEVIRFL 235
                  9*****************98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.1   4.9e+03       7      23 ..      20      36 ..      18      45 .. 0.79
   2 !   12.3   0.0   6.2e-05      0.14       2      27 ..      51      76 ..      50      79 .. 0.90
   3 !   19.6   0.0   2.7e-07   0.00061       1      27 [.      83     109 ..      83     112 .. 0.88
   4 !   23.1   0.0     2e-08   4.6e-05       1      28 [.     116     143 ..     116     148 .. 0.94
   5 !   25.0   0.0   4.9e-09   1.1e-05       2      28 ..     150     176 ..     149     178 .. 0.94
   6 !   19.5   0.0   2.9e-07   0.00067       1      22 [.     181     202 ..     181     211 .. 0.87
   7 !    7.3   0.0    0.0025       5.6       2      21 ..     216     235 ..     215     238 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.1
    PF13606.1  7 hlAasngrielveaLle 23
                 ++A+  g+++ ++  ++
  MMETSP0890-20130614|10231_1 20 YTACFDGNLDEAKRIVS 36
                 68999999998887665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.2e-05
    PF13606.1  2 GnTpLhlAasngrielveaLlengad 27
                 G T++  A++n +ie+v++L   gad
  MMETSP0890-20130614|10231_1 51 GGTAFAAAVQNSHIEVVKYLAALGAD 76
                 7799999*************999998 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 2.7e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLlengad 27 
                  +G Tp+++A+++g++++v++L++  ++
  MMETSP0890-20130614|10231_1  83 DGATPIFIACYRGNMDIVRFLCSQMVN 109
                  688******************987666 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 2e-08
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                  nGnTp+ +Aa+++r++++e+Ll++g++i
  MMETSP0890-20130614|10231_1 116 NGNTPFAIAAQHRRLDIAEILLQHGVNI 143
                  8************************987 PP

  == domain 5    score: 25.0 bits;  conditional E-value: 4.9e-09
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G Tp++ A++ g++++v++L++ngad+
  MMETSP0890-20130614|10231_1 150 GSTPFFFACQEGNLDVVKFLVRNGADV 176
                  78************************8 PP

  == domain 6    score: 19.5 bits;  conditional E-value: 2.9e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLl 22 
                  nG +p+h+A+++g++++v +L+
  MMETSP0890-20130614|10231_1 181 NGISPFHMACYRGHLDVVTYLV 202
                  799*****************97 PP

  == domain 7    score: 7.3 bits;  conditional E-value: 0.0025
    PF13606.1   2 GnTpLhlAasngrielveaL 21 
                  G+TpL +A + g+ e++++L
  MMETSP0890-20130614|10231_1 216 GRTPLEVARRAGKEEVIRFL 235
                  9*****************98 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.88     2e+03      21      36 ..      20      35 ..      19      46 .. 0.81
   2 !   12.3   0.0     6e-05      0.14      17      56 .]      52      91 ..      40      91 .. 0.88
   3 !    9.4   0.0   0.00051       1.2      16      36 ..      84     104 ..      80     107 .. 0.90
   4 !   23.5   0.0   1.8e-08     4e-05      12      56 .]     113     157 ..     108     157 .. 0.90
   5 !   21.9   0.0   5.9e-08   0.00014       1      44 [.     136     178 ..     136     181 .. 0.90
   6 !   29.3   0.0   2.7e-10   6.3e-07      18      56 .]     184     223 ..     176     223 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.88
    PF13857.1 21 hlAakggalevvrlLl 36
                 ++A+  g+l+ ++ ++
  MMETSP0890-20130614|10231_1 20 YTACFDGNLDEAKRIV 35
                 68999****9999887 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6e-05
    PF13857.1 17 ntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56
                  t++  A+ + + evv++L a gad  +   dg t++ +A
  MMETSP0890-20130614|10231_1 52 GTAFAAAVQNSHIEVVKYLAALGADMEIPIHDGATPIFIA 91
                 29*************************9999999999887 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00051
    PF13857.1  16 gntpLhlAakggalevvrlLl 36 
                  g tp+ +A+++g+ ++vr+L+
  MMETSP0890-20130614|10231_1  84 GATPIFIACYRGNMDIVRFLC 104
                  559999**************9 PP

  == domain 4    score: 23.5 bits;  conditional E-value: 1.8e-08
    PF13857.1  12 tdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                   + +gntp+ +Aa + +l+++++Ll++g+++   ++ g t++ +A
  MMETSP0890-20130614|10231_1 113 PNANGNTPFAIAAQHRRLDIAEILLQHGVNIAPVNKKGSTPFFFA 157
                  567899**********************************98766 PP

  == domain 5    score: 21.9 bits;  conditional E-value: 5.9e-08
    PF13857.1   1 Llehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnl 44 
                  Ll+hg ++++   +++g+tp+ +A+  g+l+vv++L+++gad ++
  MMETSP0890-20130614|10231_1 136 LLQHGvNIAP--VNKKGSTPFFFACQEGNLDVVKFLVRNGADVTM 178
                  89***77777..689999***********************9875 PP

  == domain 6    score: 29.3 bits;  conditional E-value: 2.7e-10
    PF13857.1  18 tpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  +p+h+A+++g+l+vv +L+ +  +d+++ d +g+t+l++A
  MMETSP0890-20130614|10231_1 184 SPFHMACYRGHLDVVTYLVvEVDVDPHAVDGSGRTPLEVA 223
                  89************************************98 PP

>> PF03158.8  Multigene family 530 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.015        34      74     118 ..      82     131 ..      54     135 .. 0.57
   2 ?    6.3   0.0    0.0024       5.5      56      97 ..     130     171 ..     123     181 .. 0.89
   3 ?    1.2   0.0      0.09     2e+02      79     100 ..     185     206 ..     164     211 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.015
    PF03158.8  74 sltqllfelACeerkydiikWi...gqnleiyel..eaiFdiAikkkdls 118
                  +   + + +AC + ++di++++     nle  +   ++ F iA +++ l 
  MMETSP0890-20130614|10231_1  82 HDGATPIFIACYRGNMDIVRFLcsqMVNLEKPNAngNTPFAIAAQHRRLD 131
                  44555566899999999999996333344443321146677777776655 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0024
    PF03158.8  56 ynmlsiLqkykeelskelsltqllfelACeerkydiikWigq 97 
                   ++ +iL ++  ++   ++   + f  AC+e + d++k++  
  MMETSP0890-20130614|10231_1 130 LDIAEILLQHGVNIAPVNKKGSTPFFFACQEGNLDVVKFLVR 171
                  578899**********999*******************9854 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.09
    PF03158.8  79 lfelACeerkydiikWigqnle 100
                   f +AC + + d+++++   ++
  MMETSP0890-20130614|10231_1 185 PFHMACYRGHLDVVTYLVVEVD 206
                  599***********99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:01.18
# Mc/sec: 542.23
//
Query:       MMETSP0890-20130614|10228_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.78
# Mc/sec: 740.41
//
Query:       MMETSP0890-20130614|10232_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   50.7   0.2    1.7e-10   40.8   0.0    2.3  2  PF00638.13 RanBP1 domain


Domain annotation for each model (and alignments):
>> PF00638.13  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00024       3.2       4      23 ..     152     171 ..     150     182 .. 0.87
   2 !   40.8   0.0   1.2e-14   1.7e-10      25     103 ..     204     280 ..     185     292 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00024
                  -S-TTEEEEEEE--EEEEEE CS
   PF00638.13   4 sgEEdEevlfkqraKLfrfd 23 
                  +gEE+E +l + raKLf++ 
  MMETSP0890-20130614|10232_1 152 NGEENETCLGRFRAKLFELV 171
                  79***************875 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 1.2e-14
                  TTTEEEE-----EEEEEETTT--EEEEEEETTTTEEEEEEE--TTS-EEE----TSEEEEEEEE-TTSS-EEEEEEEE- CS
   PF00638.13  25 ekkewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkplagsdrslvwtaadaadeeakleqlaikf 103
                  ++ +w eRG+G++++l + d+ ++R++mRr+q+  +++N  +++++    +a   ++ +   + +++++a    l +k+
  MMETSP0890-20130614|10232_1 204 KVPSWSERGIGQLRVLESIDKTAMRIVMRREQTHSLLLNVKLAPKLVT--VAKHLDTAIRLVCVTTADSAATHLLRVKT 280
                  4689***************************************98643..33333333333334444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       771  (0.0563926); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.69
# Mc/sec: 1170.39
//
Query:       MMETSP0890-20130614|10236_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 554.95
//
Query:       MMETSP0890-20130614|10234_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.63
# Mc/sec: 1259.04
//
Query:       MMETSP0890-20130614|10235_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-72  241.3   0.0    7.6e-72  240.8   0.0    1.2  1  PF00485.13 Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.038   14.6   0.6       0.12   13.0   0.5    1.9  2  PF13207.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00485.13  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.0   1.1e-75   7.6e-72       1     193 [.      43     246 ..      43     247 .. 0.99

  Alignments for each domain:
  == domain 1    score: 240.8 bits;  conditional E-value: 1.1e-75
   PF00485.13   1 vIgvagsSGaGkttvarklesifgrekvkaae............ldsflrldraekdlkledrkaakekevsalspeandfdllyevlkelkegksvekpiYnhvtgeadpkeeliegadilviEGlhglydervadllDlkiyvdisidlelaqklqRDiaeRGrsleavldsiearkpdyvkyiapqfseadliiqrvptvdt 193
                  +Igva++SG+Gk+t++r+l+ ifg+e+v +++            l+s+  ++++++d++l+dr+++k ++ +al+  +ndfd +ye+lk+lk+g++++k iYnhv+g++d+ +e i++++i+++EGlh++ derv+dllD+++y+di +d+++a+k+qRD+ eRG+sle++ +siearkpd+++++apq + ad++iq++pt ++
  MMETSP0890-20130614|10235_1  43 LIGVAADSGCGKSTFMRRLTGIFGGENVGPLGggfdnggwetntLVSDQVTVICLDDYHLNDREGRKVTKRTALDLAENDFDTMYEQLKALKNGETINKVIYNHVNGTLDA-PEEITPTPIVIVEGLHPMADERVRDLLDFSLYLDITDDVKFAWKIQRDMIERGHSLESIQASIEARKPDFDAFVAPQREFADVTIQVLPTALI 246
                  69*****************************9*******************************************************************************.*****************************************************************************************9875 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   1.8e-05      0.12       8     109 ..      50     198 ..      43     269 .. 0.68
   2 ?   -3.3   0.0       1.9   1.3e+04      73      99 ..     313     331 ..     301     337 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.8e-05
                  TT---HHHHHHHHHHST.........................EEEEEGGG.B-.-GGGS-B-----B--SSGGGB-HHHHHHHH.........................H..HHHHHHTTS.-----------EEEEE----TTGGTTT-S CS
    PF13207.1   8 pGsGKsTlakeLaerlg.........................lpvlsldd.ll.reeglkelddgereskdadadllaaildglaa.....................kkdtlswvidgale.seldlrleeadeiiyldaplpecrkrllk 109
                  +G+GKsT++++L   +g                         + v+ ldd  l  +eg k ++++ ++  ++d d   + l++l++                      + t +++++g +  ++  +r   ++  +yld+ ++ ++++++ 
  MMETSP0890-20130614|10235_1  50 SGCGKSTFMRRLTGIFGgenvgplgggfdnggwetntlvsdqVTVICLDDyHLnDREGRKVTKRTALDLAENDFDTMYEQLKALKNgetinkviynhvngtldapeeITPTPIVIVEGLHPmADERVRDLLDF-SLYLDITDD-VKFAWKI 198
                  8***********7776334444444555556666666666667789999932443345555555555555666666666666665544445555555556666666644455577777555444454555555.777777776.5555544 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.9
                  HHHHHTTS-----------EEEEE--- CS
    PF13207.1  73 wvidgaleseldlrleeadeiiyldap 99 
                  + +dg        +++  +e+iy++  
  MMETSP0890-20130614|10235_1 313 VEMDG--------KFDNLQELIYVESH 331
                  66777........88888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.88
# Mc/sec: 1070.19
//
Query:       MMETSP0890-20130614|10242_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.73
# Mc/sec: 157.57
//
Query:       MMETSP0890-20130614|10238_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:01.12
# Mc/sec: 833.42
//
Query:       MMETSP0890-20130614|10241_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.89
# Mc/sec: 1060.86
//
Query:       MMETSP0890-20130614|10244_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00031   20.7   1.4    0.00048   20.0   0.9    1.3  1  PF07123.7  Photosystem II reaction centre W protein (PsbW)
      0.004   16.3   0.8     0.0058   15.7   0.6    1.1  1  PF00591.16 Glycosyl transferase family, a/b domain
  ------ inclusion threshold ------
       0.06   12.5   1.4      0.066   12.4   0.9    1.0  1  PF13458.1  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> PF07123.7  Photosystem II reaction centre W protein (PsbW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.9   1.1e-07   0.00048      56     132 ..      29     101 ..       8     106 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
    PF07123.7  56 eataqekgkgvallaaaaalaatalPalAlVderlnteGtGlplGlndgaLgwiLlgvfgliwslYfiatkqleede 132
                   at+ + +  v+  aa+++ a+  +  +A+     + eG Gl lG+ d++     l+v ++ w+lY   +k+  ++e
  MMETSP0890-20130614|10244_1  29 PATKVNPTFLVSTGAAVMTAAS--NVQMAMAGG--QSEGMGLTLGIDDPRELVAALAVGTAFWTLYYNWAKDQPDNE 101
                  3333333334444444444332..333333332..57*************999999**********99999866555 PP

>> PF00591.16  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.6   1.3e-06    0.0058      17      42 ..      36      61 ..      33      65 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHH---BBEEE---- CS
   PF00591.16 17 tfnvstaaaivvAaaGvkvakhgnrs 42
                 tf+vst aa++ Aa  v++a+ g++s
  MMETSP0890-20130614|10244_1 36 TFLVSTGAAVMTAASNVQMAMAGGQS 61
                 9***********************98 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   1.4e-05     0.066     178     259 ..      22     101 ..      11     111 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
                  --HHHHHHHHH----EEEE-----HHHHHHHHHHC-----SS-B----B--HHHHHH---TTT--.-EEEES--TTS.SHHHH CS
    PF13458.1 178 dfssqvaqikaagpdavlltgwgadavallkaareaGldakkipvvstslseedlaalggeaaeG.vlavspyfpdldnpanr 259
                  +++  va + + +p ++++tg++++++a   +++ aG + ++   ++++l+ +d ++l ++ a G ++++ +y ++ d+p n+
  MMETSP0890-20130614|10244_1  22 NQQKPVAPATKVNPTFLVSTGAAVMTAASNVQMAMAGGQSEG---MGLTLGIDDPRELVAALAVGtAFWTLYYNWAKDQPDNE 101
                  4555566666679**************************985...55666666667777777777356667777888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.33s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 436.76
//
Query:       MMETSP0890-20130614|10248_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-18   66.0   6.1    3.1e-18   65.8   4.3    1.1  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
      0.057   12.4   0.6      0.082   11.9   0.4    1.2  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   4.3   4.5e-22   3.1e-18       1      87 [.      17     110 ..      17     113 .. 0.89

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 4.5e-22
   PF00428.14   1 eptaadikavlkaagveveaerlkllvkalegkdikeliangsakla........aaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                  +pt +d+k vl+++  e+++++l++l+  legkdi +li +g +k+         + ++ + a aaa+++aaaa+eekkeeee Eee+ dmG+g+
  MMETSP0890-20130614|10248_1  17 QPTVEDLKEVLSSVDSEADEAQLSALLGDLEGKDIASLIDSGLEKIKdipiggggGGGGGGGAVAAAGDGAAAADEEKKEEEE-EEEEIDMGGGM 110
                  59*******************************************99*******97777788888888888888888888887.58888***774 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   1.2e-05     0.082     225     246 ..      85     106 ..      72     108 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
   PF01056.13 225 dseseeeeeeeeeeeeeeeiDv 246
                  d     +ee++eeeeeeeeiD+
  MMETSP0890-20130614|10248_1  85 DGAAAADEEKKEEEEEEEEIDM 106
                  44447899999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      476  (0.0348157); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.84
# Mc/sec: 348.04
//
Query:       MMETSP0890-20130614|10250_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-70  234.3   8.5    4.6e-70  233.8   5.9    1.2  1  PF07080.6 Protein of unknown function (DUF1348)
    1.1e-05   25.5   0.5      4e-05   23.8   0.2    2.0  2  PF12680.2 SnoaL-like domain


Domain annotation for each model (and alignments):
>> PF07080.6  Protein of unknown function (DUF1348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.8   5.9   6.8e-74   4.6e-70       1     143 []      51     193 ..      51     193 .. 1.00

  Alignments for each domain:
  == domain 1    score: 233.8 bits;  conditional E-value: 6.8e-74
    PF07080.6   1 rpplppftaetaiqkvraaedawnsrdpakvalaytedsvwrnrseflqgreeiqefltrkwekeleyrlikelwafdgnriavrfayewkddsgqwfrsygnenwefdeeglmkrreasindlpiaesdrkfrwalgrrpdd 143
                  rpplppf+ + a++kvraaed+wn+rdp+kv +ayte+++wrnr+e+++gre+++efl+rkw+keleyrlike+w+ ++nriavrf ye++dds +w+r+ygnenwef+ +glm  r+asind+ i+e++r f+w+lgrrpdd
  MMETSP0890-20130614|10250_1  51 RPPLPPFSYDDAVRKVRAAEDGWNTRDPSKVKMAYTENTKWRNRAEIFTGREKVEEFLSRKWDKELEYRLIKEIWTHSDNRIAVRFCYEYRDDSNNWYRAYGNENWEFAPDGLMDVRHASINDKRITEEERLFKWPLGRRPDD 193
                  8********************************************************************************************************************************************97 PP

>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.36   2.5e+03      32      48 ..      39      55 ..      22      65 .. 0.77
   2 !   23.8   0.2   5.8e-09     4e-05       1      76 [.      66     141 ..      66     179 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.36
                 -E---HHHHHHHTTHHH CS
    PF12680.2 32 elrGrealraffralla 48
                 +++G+ +++ ++r +l 
  MMETSP0890-20130614|10250_1 39 DIHGKTQITTMMRPPLP 55
                 48899999999998874 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 5.8e-09
                  HHHHHHHHHTT-HHHHHHTEEEEEEEECTS--E---HHHHHHHTTHHHCEECEEEE.EEEE.ESSTTEEEEEEEEE-E CS
    PF12680.2   1 vraflaalnagdldalaallapdvvwedpfgelrGrealraffrallaafpdlrfe.vedv.iadgdrvvvrwtvtgt 76 
                  vra  + +n++d++++   ++++  w++ +  ++Gre + +f+ + ++   +l+++ ++++ + +++r++vr+ ++++
  MMETSP0890-20130614|10250_1  66 VRAAEDGWNTRDPSKVKMAYTENTKWRNRAEIFTGREKVEEFLSRKWD--KELEYRlIKEIwTHSDNRIAVRFCYEYR 141
                  6777899***************************************97..5555553444469999999999766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 576.27
//
Query:       MMETSP0890-20130614|10249_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.65
# Mc/sec: 342.86
//
Query:       MMETSP0890-20130614|10253_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.96
# Mc/sec: 861.19
//
Query:       MMETSP0890-20130614|10252_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-08   32.4   2.6     0.0026   15.8   1.1    2.8  3  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
    1.2e-07   30.6   7.7    2.8e-07   29.5   4.7    1.7  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.041   13.2   0.5      0.063   12.6   0.3    1.2  1  PF12230.3  Pre-mRNA splicing factor PRP21 like protein


Domain annotation for each model (and alignments):
>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.3e-06      0.01     269     395 ..      54     185 ..      24     191 .. 0.76
   2 !   15.8   1.1   5.7e-07    0.0026     450     514 ..     191     255 ..     186     264 .. 0.90
   3 ?    0.1   0.0     0.032   1.5e+02      68      86 ..     281     299 ..     276     352 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-06
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03137.15 269 kakdekkkeaeeekskkkivkklk.dfpkvlkrlltnklfmlvvlasvleslviaglstFlpKylEtq.yslsaskAnlliGvvalpaaavgillgGl...ivkkfklsakkvaklaillallsllfillll 395
                  +++  +  ++ee+ s+ ki+++ k  + + ++  l++++f++v l  + +s +++g++tF p +l  + + +s+s A++ ++ v     ++g+ +gGl   i  + ++ ++++a+l i +a++++ +il+ +
  MMETSP0890-20130614|10252_1  54 NTNSLDIVSSEENTSSLKIQTNYKpGVWEEMYLCLRQPTFIFVSLGYAGYSGALIGFATFGPSILVGLgLWKSSSLASISFSGVLATSGIIGTPIGGLgldIWTRTRIVSRQIAALEIAIATITIGLILVAF 185
                  2333332333333333345444442678889999*****************************9976537889999***99999999**********8777999****************999999876665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 5.7e-07
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03137.15 450 ellafllllailsfitalsavpsllvvlRvvkeeekslalGvqsllirllgfiPapilfGaliDs 514
                    ++f+++l++  +  +++ + + + +  +v++ +++++ +++++++  +g +P pi+ G+l D+
  MMETSP0890-20130614|10252_1 191 TQIIFIIFLLFGTIPLFAATAAMNIAIFESVPHANRAFGQALAVMIMHGFGDVPTPIIVGILKDK 255
                  45789999999999999999999999***********************************9997 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.032
                  xxxxxxxxxxxxxxxxxxx RF
   PF03137.15  68 prligiGlllmalgsllla 86 
                   rligiG+++  ++s+l  
  MMETSP0890-20130614|10252_1 281 LRLIGIGCACWLFFSILAF 299
                  599******9999888754 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   4.7   6.1e-11   2.8e-07     192     346 ..      77     237 ..      36     244 .. 0.75
   2 ?   -0.6   0.0     0.086   3.9e+02     152     188 ..     282     318 ..     277     345 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 6.1e-11
   PF07690.11 192 epaplvpawklllkppvlwillialllfffvfsg....lltllplylqevlglsp..glllaglllgllaligaigalllgrlsdrlgr....rrrlllallllllaalglallaftssavwlll..vlvliGf.glglvfptllalasdlappeerGtasglfntag 346
                  +p  + + +  l+ p +++ + ++ +    ++sg    + t+ p++    lgl +  + l +  + g+la  g+ig +++g  +d + r     r++++  ++++++++gl+l+af+ +a  +++  +++l+G+  l+ ++++++ ++ +++p  +r++ ++l+ ++ 
  MMETSP0890-20130614|10252_1  77 KPGVWEEMYLCLRQPTFIF-VSLGYA----GYSGaligFATFGPSI-LVGLGLWKssS-LASISFSGVLATSGIIGTPIGGLGLDIWTRtrivSRQIAALEIAIATITIGLILVAFAANARTQIIfiIFLLFGTiPLFAATAAMNIAIFESVPHANRAFGQALAVMIM 237
                  4444555445555555332.333333....444444559******7.77777777854.88888999999999999**********888788878888888999999999999999977777776546666898899999******************9999999654 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.086
   PF07690.11 152 ravFlilailsllaavlvllllprepperkrkspaee 188
                  r++ + +a  ++++++ + + l+  + +++r + ++e
  MMETSP0890-20130614|10252_1 282 RLIGIGCACWLFFSILAFSISLVKARIPSWRINNKDE 318
                  5566667777777777777777777777777777766 PP

>> PF12230.3  Pre-mRNA splicing factor PRP21 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   1.4e-05     0.063     100     154 ..      28      78 ..      10      89 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.4e-05
    PF12230.3 100 eeaaaeeeeeeeeeeedeeeekkeesaeksepkvkemkikaaeesrlkirkdykk 154
                  e+++   ee++  +++++++e kee++ +++++   +  +++++s+lki+++yk+
  MMETSP0890-20130614|10252_1  28 ESND---EESNDYQRNPITNEAKEEESIRNTNS-LDIVSSEENTSSLKIQTNYKP 78 
                  2222...23334444******************.99999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       738  (0.0539789); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.47s 00:00:01.15 Elapsed: 00:00:00.77
# Mc/sec: 1182.62
//
Query:       MMETSP0890-20130614|10255_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.23u 0.42s 00:00:01.65 Elapsed: 00:00:01.38
# Mc/sec: 1498.59
//
Query:       MMETSP0890-20130614|10256_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 692.61
//
Query:       MMETSP0890-20130614|10259_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   14.0   0.0       0.59   10.0   0.0    2.5  2  PF07293.6 Protein of unknown function (DUF1450)
      0.041   13.4   0.0      0.089   12.3   0.0    1.5  2  PF06297.9 PET Domain


Domain annotation for each model (and alignments):
>> PF07293.6  Protein of unknown function (DUF1450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   8.7e-05      0.59      29      74 ..      84     130 ..      77     132 .. 0.83
   2 ?    2.1   0.0     0.025   1.7e+02      10      36 ..     130     156 ..     124     159 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.7e-05
    PF07293.6  29 ldvleygC.lsyCgiCaeslfalvnGevvegdtpeeLveniyeeiee 74 
                  l+ le g  +syC i a+++  + +G+ v+ d+ ++L+++    i e
  MMETSP0890-20130614|10259_1  84 LETLELGVpTSYCRIMATTIGEILDGDQVKLDNIQALIQDDTVSICE 130
                  56667765479***************************986666655 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.025
    PF07293.6  10 snlakGsqealekLekdpnldvleygC 36 
                   n+++ +q+a  +  ++p+ ++l+ g 
  MMETSP0890-20130614|10259_1 130 ENMSERAQAAARTFRRRPEAQILDIGS 156
                  79*****************99998875 PP

>> PF06297.9  PET Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05     0.089      65     103 ..     120     158 ..     101     160 .. 0.90
   2 ?   -3.7   0.0       1.2   8.5e+03      65      77 ..     177     189 ..     167     196 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
    PF06297.9  65 PkhDqdvekckelseeekkeleefvkqrkeealgvgevk 103
                    +D+ v+ c+++se+ ++  ++f ++  ++ l++g+++
  MMETSP0890-20130614|10259_1 120 LIQDDTVSICENMSERAQAAARTFRRRPEAQILDIGSIR 158
                  579*********************************997 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.2
    PF06297.9  65 PkhDqdvekckel 77 
                  P +D++v++  ++
  MMETSP0890-20130614|10259_1 177 PSFDDNVKQHASI 189
                  7778777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       517  (0.0378145); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 743.58
//
Query:       MMETSP0890-20130614|10263_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.5   0.4       0.17   11.8   0.3    1.4  1  PF03732.12 Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> PF03732.12  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   1.3e-05      0.17      35      85 ..      82     139 ..      78     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   PF03732.12  35 afrktflpserkdqleeelrslrQgtesvreYyerfktladqldevvte.......ea 85 
                  ++ +t  ps+++d+l+++l++++ +t   ++++++f+t  + l+ev++        + 
  MMETSP0890-20130614|10263_1  82 VYAATTIPSKKNDDLTSRLSDCSLKTTEYTDFMTNFNTWSRLLQEVFDTygtdkkrKN 139
                  667888999********************************99986655444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.71
# Mc/sec: 546.77
//
Query:       MMETSP0890-20130614|10257_1  [L=1075]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-41  141.7   0.0    8.5e-26   90.5   0.1    3.6  2  PF00005.22 ABC transporter
    5.2e-13   49.4   0.2     0.0015   18.4   0.0    4.4  4  PF13304.1  AAA domain
    1.4e-12   47.1   1.4     0.0028   16.8   0.0    4.3  4  PF02463.14 RecF/RecN/SMC N terminal domain
    2.1e-06   26.9   4.9       0.11   11.4   0.0    3.7  4  PF13175.1  AAA ATPase domain
    6.7e-06   25.8   0.0     0.0021   17.8   0.0    2.9  2  PF13558.1  Putative exonuclease SbcCD, C subunit
    9.2e-05   22.0   0.2        0.5    9.9   0.1    3.2  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    9.8e-05   22.2   0.1        0.1   12.5   0.0    3.4  2  PF01926.18 50S ribosome-binding GTPase
    0.00026   20.3   3.8     0.0027   17.0   0.1    3.1  3  PF13555.1  P-loop containing region of AAA domain
    0.00034   20.6   0.0       0.41   10.6   0.0    3.4  2  PF13401.1  AAA domain
    0.00035   20.4   0.0      0.069   12.9   0.0    2.7  2  PF13521.1  AAA domain
    0.00041   20.7   4.0     0.0058   17.0   0.2    3.6  3  PF13513.1  HEAT-like repeat
    0.00062   20.1   0.0        1.4    9.2   0.0    3.1  2  PF08477.8  Miro-like protein
    0.00074   19.7   5.8      0.035   14.3   0.1    3.5  3  PF13476.1  AAA domain
     0.0011   18.0   0.2     0.0042   16.1   0.0    2.0  2  PF03193.11 Protein of unknown function, DUF258
     0.0018   18.4   2.2      0.014   15.5   0.1    3.2  3  PF13646.1  HEAT repeats
     0.0029   17.9   0.4       0.25   11.5   0.0    3.5  3  PF13191.1  AAA ATPase domain
     0.0066   16.3   0.8        7.2    6.8   0.0    3.5  2  PF02985.17 HEAT repeat
     0.0082   15.9   0.0       0.15   11.8   0.0    2.6  2  PF13671.1  AAA domain
  ------ inclusion threshold ------
      0.015   15.9   0.1        1.7    9.3   0.0    3.4  3  PF13207.1  AAA domain
       0.02   14.2   0.0        4.4    6.6   0.0    2.9  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.036   14.1   0.0        6.3    6.8   0.0    3.0  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.037   13.8   0.0        8.1    6.2   0.0    3.1  2  PF13173.1  AAA domain
       0.06   12.8   0.0         13    5.2   0.0    2.5  2  PF05729.7  NACHT domain
      0.067   12.3   0.2        1.5    7.8   0.1    2.9  3  PF12846.2  AAA-like domain
      0.099   12.3   0.0      0.099   12.3   0.0    2.9  2  PF12848.2  ABC transporter
       0.14   11.7   3.4        4.8    6.6   0.0    3.4  3  PF01637.13 Archaeal ATPase


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   6.4e-15   3.3e-12      64     118 .]     503     587 ..     408     587 .. 0.71
   2 !   90.5   0.1   1.6e-28   8.5e-26       1     118 []     724     945 ..     724     945 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 6.4e-15
                  -..............................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                  x..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22  64 k..............................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                                                 +++ +  ++ kvg++e++  + v+tLSgG+++++al ra+l+++++llLDEPtn
  MMETSP0890-20130614|10257_1 503 VfveadimgelshlscleyifrdpriqacgvERDAVAGMMLKVGFSEKMLGDAVTTLSGGWRMKLALSRAMLQRADVLLLDEPTN 587
                  044444444444455555555555556688889999999********77667********************************8 PP

  == domain 2    score: 90.5 bits;  conditional E-value: 1.6e-28
                  HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------...--BH...........................HHHHH----S--...............................................................................................-HHHHHHHHHH---HH.HH------------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx...........................xxxxxxxxxxxx...............................................................................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf..peltv...........................renldmakeekk...............................................................................................tdkrieevlekvglde.lldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  STL+k+ltgel+pt+g+++ + + r            igyi+q+++ +  ++l++                           +          +                                                                                               t + +e+++++vgl+  ++++sr++ LSgGqk++v+l +a++++p+l++LDEPtn
  MMETSP0890-20130614|10257_1 724 STLIKVLTGELTPTTGTVWAHpSAR------------IGYIAQHAFHHieQHLQMtpneyvrwryaggddkeavakdtmkltD----------EeikaqqttidwthtnpetgeikkskrviarltgerktnkstkendyevqfkhpydgeehkayvglkkltkygfakaakkvdvrvaqrssgmfrplTSSNVEQHFKNVGLEPeFATHSRIQALSGGQKVKVVLGAATWQQPHLMILDEPTN 945
                  9********************6666............***********99888887777777777777666666655555552..........044455555668888888888888888888888888888888899999999999999*********************************************************************************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0035       1.8       4      20 ..     471     487 ..     469     511 .. 0.82
   2 !   18.4   0.0   2.8e-06    0.0015     249     302 ..     571     619 ..     557     620 .. 0.86
   3 !   15.0   0.1   3.2e-05     0.017       5      19 ..     716     730 ..     713     740 .. 0.90
   4 ?    1.8   0.0      0.33   1.7e+02     238     298 ..     918     972 ..     767     976 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0035
    PF13304.1   4 iiGpNgsGKSnlLkald 20 
                  + G N sGK++lL++l+
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLA 487
                  88*************95 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.8e-06
    PF13304.1 249 tallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                   a l++    +vll+DEp n+L+   ++ + + lk+l+n  ++ i+++H+  ll
  MMETSP0890-20130614|10257_1 571 RAMLQRA---DVLLLDEPTNHLDVMNVKWVKDYLKSLTN--VTAIMVSHDSGLL 619
                  5555555...9****************************..********98775 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 3.2e-05
    PF13304.1   5 iGpNgsGKSnlLkal 19 
                  iGpNg+GKS+l+k+l
  MMETSP0890-20130614|10257_1 716 IGPNGAGKSTLIKVL 730
                  9************99 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.33
    PF13304.1 238 SdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHS 298
                  S G+k    l +a ++ +    + ++DEp n+L+ + l +l+  ++e       +++ +H+
  MMETSP0890-20130614|10257_1 918 SGGQKVKVVLGAATWQQP---HLMILDEPTNYLDRESLGALAGAIREFDG---GIVVISHN 972
                  666555555555555555...78999*******99999999988877644...77777776 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.29   1.5e+02      20      44 ..     461     486 ..     451     489 .. 0.78
   2 !   16.8   0.0   5.3e-06    0.0028     136     211 ..     558     629 ..     525     636 .. 0.76
   3 !    8.3   0.0    0.0021       1.1      17      43 ..     704     729 ..     694     737 .. 0.74
   4 !   15.7   0.0   1.1e-05    0.0059     118     218 ..     890     993 ..     782     995 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.29
                  -----SEEE.E--------HHHHHHH CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxx RF
   PF02463.14  20 lpfsksfta.ivGpNGSGKsnvldAi 44 
                  l+++++f+  ++G N SGK+++l ++
  MMETSP0890-20130614|10257_1 461 LKLKRGFKYgLLGVNDSGKTSLLRSL 486
                  556666653389**********9887 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 5.3e-06
                  G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-.SEEE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka.dklvgv 211
                  +LSgG +    + L ++  + ++a + llDe   +LD  nv+ v ++lk+ + n+  i++s+++++l+++ d+++ +
  MMETSP0890-20130614|10257_1 558 TLSGGWR----MKLALSRAMLQRADVLLLDEPTNHLDVMNVKWVKDYLKSLT-NVTAIMVSHDSGLLTDVcDHIIEI 629
                  5566644....56667778899999**************************9.8999999***99988765766665 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0021
                  EE------SEEEE--------HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  17 tvilpfsksftaivGpNGSGKsnvldA 43 
                  tv++ +s++  a +GpNG+GKs ++  
  MMETSP0890-20130614|10257_1 704 TVQVSLSSR-VACIGPNGAGKSTLIKV 729
                  555555554.4678********99875 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 1.1e-05
                  E-HHHHHHHHHCTT--TT........G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-.SEEE--EE.ETTT CS
                  xxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
   PF02463.14 118 vtkkevaellesagiske........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka.dklvgvtkvengv 218
                   t+++v++ ++++g+++e        +LSgG+k    + +++     ++  l++lDe    LD +   ++a  ++e      ++vis+++++++   +++  v k e+g+
  MMETSP0890-20130614|10257_1 890 LTSSNVEQHFKNVGLEPEfathsriqALSGGQK----VKVVLGAATWQQPHLMILDEPTNYLDRESLGALAGAIREFD--GGIVVISHNSDFTKALcNETWVVEKDEDGI 993
                  45566666666666666699999999******9....56677778888889*************************99..89********99887657777777766665 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0091       4.8      14      44 ..     458     488 ..     427     511 .. 0.80
   2 !   11.4   0.0    0.0002      0.11     371     414 ..     577     618 ..     563     619 .. 0.88
   3 !    9.3   0.2   0.00089      0.47      25      98 ..     708     842 ..     672     866 .. 0.66
   4 ?   -2.7   0.6       3.9   2.1e+03     311     330 ..    1031    1050 ..    1009    1071 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0091
    PF13175.1  14 sleeinldesln.viiGeNgsGKttILealek 44 
                  ++ +++l++++   + G N+sGKt++L +l +
  MMETSP0890-20130614|10257_1 458 NT-NLKLKRGFKyGLLGVNDSGKTSLLRSLAN 488
                  45.7888888886699**************33 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.0002
    PF13175.1 371 n.IlliDEPeahlhptlqkellefLkelakknniqiiitTHsphl 414
                    +ll+DEP  hl++ + k + ++Lk+l++   ++ i  +H++ l
  MMETSP0890-20130614|10257_1 577 AdVLLLDEPTNHLDVMNVKWVKDYLKSLTN---VTAIMVSHDSGL 618
                  249**************************9...999999999987 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00089
    PF13175.1  25 n.....viiGeNgsGKttILeal..eklknrknmlfikk...............................................nlklkieglfkllvkekkkikisesdnkadidky.......niekkskk 98 
                  +       iG Ng+GK+t+++ l  e   ++++++  +                                                + ++k ++ ++  ++++ +++ ++++   + ++        +++ ++++
  MMETSP0890-20130614|10257_1 708 SlssrvACIGPNGAGKSTLIKVLtgELTPTTGTVWAHPSarigyiaqhafhhieqhlqmtpneyvrwryaggddkeavakdtmkltDEEIKAQQTTIDWTHTNPETGEIKKSKRVIARLTgerktnkSTKENDYE 842
                  144666789**************9988888888888887777777777777777777777777777777777777777777777776666667777777777777777666666666555556554444444444 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 3.9
    PF13175.1  311 eykfekkldennikleikey 330 
                   e+k +k+l + +ik+  k++
  MMETSP0890-20130614|10257_1 1031 EIKQKKTLSKKEIKVMKKKV 1050
                   22222222222222222222 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.046        24      51      88 ..     570     601 ..     544     603 .. 0.68
   2 !   17.8   0.0   3.9e-06    0.0021      22      89 ..     906     960 ..     888     961 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.046
    PF13558.1  51 aalyssaegrepsirlvfLDEAFsklDeeniasllell 88 
                  + ++ +      + + ++LDE+++ lD  n++ + ++l
  MMETSP0890-20130614|10257_1 570 SRAMLQ------RADVLLLDEPTNHLDVMNVKWVKDYL 601
                  333333......5688***********99987666655 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 3.9e-06
    PF13558.1  22 kekelsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllellr 89 
                  +e  +++r+++lSGG+k   v ++l+aA  ++          + l++LDE+++ lD e++ +l+ ++r
  MMETSP0890-20130614|10257_1 906 PEFATHSRIQALSGGQK---VKVVLGAATWQQ----------PHLMILDEPTNYLDRESLGALAGAIR 960
                  555699***********...999999876544..........678****************9999887 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0028       1.5       6      23 ..     472     489 ..     469     494 .. 0.87
   2 !    9.9   0.1   0.00094       0.5       2      24 ..     712     734 ..     711     744 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0028
                  E-------HHHHHHHHHH CS
    PF03205.9   6 vGpkdsGKTtlieklvnk 23 
                   G  dsGKT+l+++l+n 
  MMETSP0890-20130614|10257_1 472 LGVNDSGKTSLLRSLANN 489
                  6999***********996 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00094
                  EEEEE-------HHHHHHHHHHH CS
    PF03205.9   2 ivavvGpkdsGKTtlieklvnkl 24 
                  +va++Gp + GK+tli+ l  +l
  MMETSP0890-20130614|10257_1 712 RVACIGPNGAGKSTLIKVLTGEL 734
                  799*************9887665 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.022        12       2      22 ..     469     489 ..     468     632 .. 0.88
   2 !   12.5   0.0   0.00019       0.1       1      22 [.     712     733 ..     712     807 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.022
                  EEEE--TT---HHHHHHHHCS CS
   PF01926.18   2 vaivGrpNvGKStLinaLtge 22 
                   +++G   +GK++L+++L ++
  MMETSP0890-20130614|10257_1 469 YGLLGVNDSGKTSLLRSLANN 489
                  5899**************974 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00019
                  EEEEE--TT---HHHHHHHHCS CS
   PF01926.18   1 evaivGrpNvGKStLinaLtge 22 
                  +va +G   +GKStLi+ Ltge
  MMETSP0890-20130614|10257_1 712 RVACIGPNGAGKSTLIKVLTGE 733
                  699*****************74 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.1        54      20      40 ..     464     483 ..     440     488 .. 0.82
   2 !   17.0   0.1   5.1e-06    0.0027      11      51 ..     699     738 ..     697     747 .. 0.81
   3 ?   -2.4   0.1         6   3.2e+03       6      38 ..     803     836 ..     800     836 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.1
    PF13555.1  20 dpkgkntlltGasGsGKSTll 40 
                  + +g ++ l G + sGK++ll
  MMETSP0890-20130614|10257_1 464 K-RGFKYGLLGVNDSGKTSLL 483
                  4.45577799*********98 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 5.1e-06
    PF13555.1  11 tfdghtveidpkgkntlltGasGsGKSTllDAiqtlLvpak 51 
                  t+++ tv+++ ++  ++ +G++G+GKSTl+  ++  L+p++
  MMETSP0890-20130614|10257_1 699 TIEKATVQVSLSS-RVACIGPNGAGKSTLIKVLTGELTPTT 738
                  5667788888886.8999***********977777777665 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 6
    PF13555.1   6 lvNWgtfdghtveidpkgkn.tlltGasGsGKST 38 
                   ++W   + +t ei++++++   ltG+    KST
  MMETSP0890-20130614|10257_1 803 TIDWTHTNPETGEIKKSKRViARLTGERKTNKST 836
                  5789888889999987776436799999999988 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.025        13      11      49 ..     473     511 ..     470     615 .. 0.70
   2 !   10.6   0.0   0.00078      0.41       7      28 ..     713     734 ..     708     801 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
    PF13401.1  11 GesGvGKTtllrrlarqldeeaeaaekarvvfveapast 49 
                  G   +GKT llr la++       +++ r+vfvea   +
  MMETSP0890-20130614|10257_1 473 GVNDSGKTSLLRSLANNSLDGFPSPDEMRTVFVEADIMG 511
                  78889***********86554444449999999987666 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00078
    PF13401.1   7 lvvtGesGvGKTtllrrlarql 28 
                  ++++G+ G+GK+tl++ l  +l
  MMETSP0890-20130614|10257_1 713 VACIGPNGAGKSTLIKVLTGEL 734
                  68*************9988776 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.049        26       4      35 ..     471     505 ..     468     523 .. 0.74
   2 !   12.9   0.0   0.00013     0.069       1      43 [.     712     760 ..     712     805 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.049
    PF13521.1   4 itGgpstGKTtlleaLaar...gypvvpEvarevl 35 
                  ++G   +GKT+ll+ La++   g+p   E+ + ++
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLANNsldGFPSPDEMRTVFV 505
                  5667779**********986666666555544444 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00013
    PF13521.1   1 kivitGgpstGKTtlleaLaar.....gypvv.pEvarevleeklakge 43 
                  +++ +G+ ++GK+tl++ L+ +     g++++ p +   ++ ++++ + 
  MMETSP0890-20130614|10257_1 712 RVACIGPNGAGKSTLIKVLTGEltpttGTVWAhPSARIGYIAQHAFHHI 760
                  6899***************943355569999977777788888874443 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.1e-05    0.0058       1      53 [.     152     204 ..     152     206 .. 0.94
   2 ?    2.6   0.2      0.36   1.9e+02      17      37 ..     290     310 ..     272     323 .. 0.74
   3 ?   -0.9   0.0       4.5   2.4e+03      11      34 ..     309     333 ..     304     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-05
    PF13513.1   1 wrvRraAawaLGr.laggeprllepavpellpaLlelLeddddeVReaAawALg 53 
                  w+ R aA++aL + l+ + p  l   + +++pa ++lL d +++V +aA  +L 
  MMETSP0890-20130614|10257_1 152 WQTRSAALKAL-TlLCSVFPSELTGELADVIPAITPLLFDTKKDVAAAAFESLR 204
                  899********.77*************************9999******99996 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.36
    PF13513.1  17 geprllepavpellpaLlelL 37 
                   +p  ++p++p+llp L +l 
  MMETSP0890-20130614|10257_1 290 DRPIEAAPFLPKLLPGLEKLA 310
                  5677899**********9776 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 4.5
    PF13513.1  11 LGr.laggeprllepavpellpaLl 34 
                  L+  la +e+rl+++   +l++aL 
  MMETSP0890-20130614|10257_1 309 LADeLADPEARLVCEKSVALMKALE 333
                  555688999*************997 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0097       5.1       3      25 ..     470     492 ..     468     519 .. 0.79
   2 !    9.2   0.0    0.0027       1.4       1      25 [.     712     736 ..     712     809 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0097
    PF08477.8   3 vvvGdkgvGKssllsqlvgeefp 25 
                   ++G  ++GK+sll++l+  + +
  MMETSP0890-20130614|10257_1 470 GLLGVNDSGKTSLLRSLANNSLD 492
                  68999************987765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0027
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp 25 
                  +v+ +G  g+GKs+l++ l+ge  p
  MMETSP0890-20130614|10257_1 712 RVACIGPNGAGKSTLIKVLTGELTP 736
                  7899*************99998777 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.16        86      24      39 ..     471     486 ..     455     510 .. 0.87
   2 !   14.3   0.1   6.7e-05     0.035      25      88 ..     716     813 ..     698     877 .. 0.52
   3 ?    2.2   0.6      0.33   1.7e+02      70     120 ..    1015    1062 ..     971    1073 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.16
    PF13476.1  24 ItGpNGsGKTTildAi 39 
                  + G N sGKT++l ++
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSL 486
                  6799*********876 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6.7e-05
    PF13476.1  25 tGpNGsGKTTildAiclaLygkt....srlkksrgrgilkddve.iek..egkkkayvelsfeddkgrek............................t 88 
                  +GpNG+GK+T+++ ++  L+  t    + ++ +   +i ++ ++ ie+  + + ++yv+  +  ++++e+                            t
  MMETSP0890-20130614|10257_1 716 IGPNGAGKSTLIKVLTGELTPTTgtvwAHPSAR-IGYIAQHAFHhIEQhlQMTPNEYVRWRYAGGDDKEAvakdtmkltdeeikaqqttidwthtnpeT 813
                  5************99998887662223222222.22444444443333553333444444433333332233333333333333332233332222221 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.33
    PF13476.1   70 kkkayvelsfeddkgrektylieeerektkkkgkkvkkeilellei.deleq 120 
                   +++a+ e++ + ++     ++i+++++++kk +k  kk+ +e+++  +ele+
  MMETSP0890-20130614|10257_1 1015 DQAAITEITDQFGNV----TEIKQKKTLSKKEIKVMKKKVTEKIKSgAELEE 1062
                   455566666555555....457777777777777777777777666533333 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.5   1.8e+03      40      58 ..     471     489 ..     446     509 .. 0.83
   2 !   16.1   0.0     8e-06    0.0042      27      67 ..     703     742 ..     678     755 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.5
                  EE-------HHHHHHH--- CS
   PF03193.11  40 lvGqSGvGKSsLinallpe 58 
                  l+G    GK+sL+ +l+++
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLANN 489
                  5666677******999886 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 8e-06
                  HHHHHHCTTSBEEEE-------HHHHHHH--------S--- CS
   PF03193.11  27 eelaellkdktsvlvGqSGvGKSsLinallpeldlkvgevs 67 
                  ++++  l+++ ++ +G+ G+GKS+Li++l++el+  +g+v 
  MMETSP0890-20130614|10257_1 703 ATVQVSLSSR-VACIGPNGAGKSTLIKVLTGELTPTTGTVW 742
                  3344445554.5678******************99999885 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.8   3.1e+03      28      53 ..     115     140 ..      99     149 .. 0.66
   2 !   15.5   0.1   2.7e-05     0.014      10      68 ..     148     219 ..     137     240 .. 0.71
   3 ?    0.3   0.1       1.5     8e+02      33      82 ..     257     321 ..     234     327 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 5.8
    PF13646.1  28 gseealpaLlelLkdsdpevRraAae 53 
                  + e+a +a+l++++  dp+v   +++
  MMETSP0890-20130614|10257_1 115 AAEAAWKAVLHAIQTTDPSVAVVVCQ 140
                  33477888888888888888776665 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.7e-05
    PF13646.1  10 kdpdpevraaaieaLgqlgse..........ealpaLlelLkdsdpevRraAaeaLgklgd...pealpaLl 68 
                   +  +++r aa++aL  l s           +++pa++ lL d   +v +aA e+L +++d   ++ ++++l
  MMETSP0890-20130614|10257_1 148 PELAWQTRSAALKALTLLCSVfpseltgelaDVIPAITPLLFDTKKDVAAAAFESLRECSDltgNKDIEHIL 219
                  455789**********55544344455555688************************996433344444443 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.5
    PF13646.1  33 lpaLlelL...kdsdpevRraAaeaLgklg............dpealpaLlklldddedavvrea 82 
                  +p+L ++L     s+ +v+r+ a  + +++             p+ lp L+kl+d+  d   r  
  MMETSP0890-20130614|10257_1 257 VPLLSRALalkGASSTAVKRQTALIICNMSklvdrpieaapfLPKLLPGLEKLADELADPEARLV 321
                  66666666664456666666666666666434444444444446666666666655555555555 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       6.8   3.6e+03     103     141 ..     367     428 ..     256     445 .. 0.57
   2 ?    1.6   0.0      0.54   2.8e+02      34      46 ..     477     489 ..     471     503 .. 0.79
   3 !   11.5   0.0   0.00048      0.25       9     103 ..     697     784 ..     694     969 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6.8
    PF13191.1 103 a.........lipelegiiglqalvalldaalartr..............rpk.lvlvlDDlq 141
                             +++   + +++ ++a+l++ l++ +              + k + + +DD  
  MMETSP0890-20130614|10257_1 367 IvadyaaelsIGLAKRNCFDEELWTAALEPVLTQYQddasgrilcalelaK-KaTAISIDDNE 428
                  044434444434444555555666666666666666666666666666532.23666666644 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.54
    PF13191.1  34 iGKSsLlrelakp 46 
                  +GK+sLlr+la +
  MMETSP0890-20130614|10257_1 477 SGKTSLLRSLANN 489
                  8********6544 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00048
    PF13191.1   9 leaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalga 103
                  ++++++a  +vs +s  +  +Gp G GKS+L++      l  +l  ++g ++ +    + ++i+q + + ++q l+ + +e  +wr a  ++++a
  MMETSP0890-20130614|10257_1 697 VNTIEKATVQVSLSS-RVACIGPNGAGKSTLIKV-----LTGELTPTTGTVWAHPSA-RIGYIAQHAFHHIEQHLQMTPNEYVRWRYAGGDDKEA 784
                  567788888888888.7999************98.....655666666665555554.6677777766666666677777777777666666666 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.024        13      13      30 ..     151     168 ..     138     169 .. 0.88
   2 ?    6.8   0.0     0.014       7.2       1      27 [.     180     206 ..     180     209 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.024
                  SHHHHHHHHHHHHHHHHC CS
   PF02985.17  13 speVReaAaeaLgalaev 30 
                  +++ R+aA++aL+ l++v
  MMETSP0890-20130614|10257_1 151 AWQTRSAALKALTLLCSV 168
                  699************987 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.014
                  HHHHHHHHHTSSSHHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgal 27 
                  ++P++  ll D+  +V +aA+e+L + 
  MMETSP0890-20130614|10257_1 180 VIPAITPLLFDTKKDVAAAAFESLREC 206
                  69*********************9875 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.72   3.8e+02       5      23 ..     472     490 ..     471     523 .. 0.77
   2 !   11.8   0.0   0.00028      0.15       2      26 ..     713     740 ..     713     810 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.72
    PF13671.1   5 vGlpGsGKstlaerllkkl 23 
                   G+  sGK+ l+++l+++ 
  MMETSP0890-20130614|10257_1 472 LGVNDSGKTSLLRSLANNS 490
                  57888*********99654 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00028
    PF13671.1   2 vllvGlpGsGKstlaerllkklg...yv 26 
                  v ++G+ G+GKstl++ l  +l+   ++
  MMETSP0890-20130614|10257_1 713 VACIGPNGAGKSTLIKVLTGELTpttGT 740
                  6799************998888755544 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       6.1   3.2e+03      84     101 ..     412     429 ..     305     451 .. 0.57
   2 ?    2.1   0.0      0.55   2.9e+02       6      32 ..     473     499 ..     468     538 .. 0.72
   3 ?    9.3   0.0    0.0031       1.7       2      22 ..     713     733 ..     712     809 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 6.1
                  --------EEEEE----T CS
    PF13207.1  84 dlrleeadeiiyldaplp 101
                  +l l+ + ++i++d+  +
  MMETSP0890-20130614|10257_1 412 ALELAKKATAISIDDNEE 429
                  224444445555554444 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.55
                  --TT---HHHHHHHHH.HS.TEEEEEGGG CS
    PF13207.1   6 GppGsGKsTlakeLae.rl.glpvlsldd 32 
                  G   sGK++l + La+  l g+p  s d+
  MMETSP0890-20130614|10257_1 473 GVNDSGKTSLLRSLANnSLdGFP--SPDE 499
                  55569**********94456676..6665 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0031
                  E--B--TT---HHHHHHHHHH CS
    PF13207.1   2 iaitGppGsGKsTlakeLaer 22 
                  +a +Gp G+GKsTl k L  +
  MMETSP0890-20130614|10257_1 713 VACIGPNGAGKSTLIKVLTGE 733
                  6668************99555 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.043        23       6      26 ..     471     491 ..     468     495 .. 0.90
   2 ?    6.6   0.0    0.0084       4.4       2      25 ..     711     734 ..     710     775 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.043
    PF10662.4   6 liGkvgaGKTtLtqalkgeel 26 
                  l+G  ++GKT+L ++l +++l
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLANNSL 491
                  78999***********99887 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0084
    PF10662.4   2 kkilliGkvgaGKTtLtqalkgee 25 
                  +++  iG+ gaGK tL + l+ge 
  MMETSP0890-20130614|10257_1 711 SRVACIGPNGAGKSTLIKVLTGEL 734
                  58899***************9975 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.097        51       3      22 ..     471     490 ..     469     584 .. 0.77
   2 ?    6.8   0.0     0.012       6.3       3      23 ..     715     735 ..     713     769 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.097
                  EE-------HHHHHHHHHHC CS
   PF00004.24   3 lyGppGtGKTllakavakel 22 
                  l G    GKT+l +++a+++
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLANNS 490
                  6788999***********95 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.012
                  EE-------HHHHHHHHHHCT CS
   PF00004.24   3 lyGppGtGKTllakavakelg 23 
                   +Gp G GK++l+k +  el 
  MMETSP0890-20130614|10257_1 715 CIGPNGAGKSTLIKVLTGELT 735
                  58**************99974 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.015       8.1       7      33 ..     471     503 ..     466     528 .. 0.77
   2 ?    3.7   0.0      0.09        47       6      27 ..     714     735 ..     710     776 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.015
    PF13173.1   7 itGpRrvGKttllkqlakell......keesil 33 
                  + G+  +GKt ll+ la++ l      +e +++
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLANNSLdgfpspDEMRTV 503
                  789**************9999777754444444 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.09
    PF13173.1   6 vitGpRrvGKttllkqlakell 27 
                  + +Gp ++GK+tl+k l  el 
  MMETSP0890-20130614|10257_1 714 ACIGPNGAGKSTLIKVLTGELT 735
                  568***********98876655 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.025        13       6      39 ..     472     505 ..     470     524 .. 0.89
   2 ?    4.7   0.1     0.035        19       3      21 ..     713     731 ..     711     739 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.025
    PF05729.7   6 qGeaGsGKTtLlqklasawakgklpqdafklvFf 39 
                   G + sGKT Ll++la+   +g +  d+++ vF+
  MMETSP0890-20130614|10257_1 472 LGVNDSGKTSLLRSLANNSLDGFPSPDEMRTVFV 505
                  677889***********99999999999998886 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.035
    PF05729.7   3 vilqGeaGsGKTtLlqkla 21 
                  v+  G++G GK+tL++ l 
  MMETSP0890-20130614|10257_1 713 VACIGPNGAGKSTLIKVLT 731
                  7789**********99776 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.98   5.1e+02       7      27 ..     472     492 ..     470     517 .. 0.64
   2 ?    7.8   0.1    0.0028       1.5       5      24 ..     714     733 ..     711     742 .. 0.87
   3 ?   -0.8   0.0       1.2   6.4e+02     247     287 ..     937     973 ..     916     983 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.98
    PF12846.2   7 lGppGsGKSvllkklvlqlla 27 
                  lG   sGK++ll++l+ + l 
  MMETSP0890-20130614|10257_1 472 LGVNDSGKTSLLRSLANNSLD 492
                  67888**********888776 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0028
    PF12846.2   5 lilGppGsGKSvllkklvlq 24 
                  +++Gp G+GKS+l+k l+ +
  MMETSP0890-20130614|10257_1 714 ACIGPNGAGKSTLIKVLTGE 733
                  789************99765 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.2
    PF12846.2 247 llviDEahrllgspegadfldelaregRkfgvgiilatQsl 287
                  l+++DE  ++l+     + l +la   R f +gi++++++ 
  MMETSP0890-20130614|10257_1 937 LMILDEPTNYLDR----ESLGALAGAIREFDGGIVVISHNS 973
                  6777777777766....556667777788**********84 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00019     0.099       1      25 [.     627     651 ..     627     659 .. 0.91
   2 ?    0.6   0.2      0.87   4.6e+02      30      58 ..     806     834 ..     789     845 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
    PF12848.2   1 velengklteYkGnYseyleqkeer 25 
                  +e++n kl++Y+Gn +++++ k + 
  MMETSP0890-20130614|10257_1 627 IEIDNLKLHTYRGNLTTFVKMKPQA 651
                  69******************99765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.87
    PF12848.2  30 ekayekqqkeikkleefIdrfrakaskak 58 
                  + + + +  eikk +++I+r+    ++ k
  MMETSP0890-20130614|10257_1 806 WTHTNPETGEIKKSKRVIARLTGERKTNK 834
                  55555566799999999999996443333 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.6   3.5e+03      96     123 ..     109     137 ..      81     141 .. 0.73
   2 ?    6.6   0.0    0.0091       4.8      25      46 ..     471     492 ..     461     520 .. 0.80
   3 ?    4.1   0.0     0.056        29      26      44 ..     716     734 ..     706     805 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 6.6
                  -.TS-GG.G--HHHHHHHHHH----EEEE CS
   PF01637.13  96 k.kksklvflaleellealkkkgkkiiii 123
                  k +++k ++ a++ +l a+++++  ++++
  MMETSP0890-20130614|10257_1 109 KnQIKKAAEAAWKAVLHAIQTTDPSVAVV 137
                  24778899999999999999999887776 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0091
                  EE--TT---HHHHHHHHHH-.. CS
   PF01637.13  25 iyGprrsGKTaLlkeileelke 46 
                  ++G   sGKT+Ll+ ++++ ++
  MMETSP0890-20130614|10257_1 471 LLGVNDSGKTSLLRSLANNSLD 492
                  78999*************9966 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.056
                  E--TT---HHHHHHHHHH- CS
   PF01637.13  26 yGprrsGKTaLlkeileel 44 
                   Gp + GK++L+k++  el
  MMETSP0890-20130614|10257_1 716 IGPNGAGKSTLIKVLTGEL 734
                  5************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1026  (0.0750439); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.80u 0.38s 00:00:02.18 Elapsed: 00:00:01.62
# Mc/sec: 1590.18
//
Query:       MMETSP0890-20130614|10265_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-08   31.6   0.0    1.1e-07   31.4   0.0    1.0  1  PF07258.9 HCaRG protein


Domain annotation for each model (and alignments):
>> PF07258.9  HCaRG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.9e-12   1.1e-07     114     176 ..       8      69 ..       3      71 .. 0.94

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 7.9e-12
    PF07258.9 114 dlsWRvdvklssselqevnsPvilleLklqngggssetvtfelseeklqellkelkeaqkele 176
                  + +WR+d++l++++l  +++P+ +++Lk++++ ++++   fe +++ +q l ++l++a +e +
  MMETSP0890-20130614|10265_1   8 SAEWRLDCELGRRTLLNTAEPSFVVKLKTGGE-DETKATFFEADAAHMQYLEQQLAAAVAEAS 69 
                  569*****************************.***********************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 303.29
//
Query:       MMETSP0890-20130614|10269_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-41  140.0   0.0    7.4e-41  139.4   0.0    1.3  1  PF00227.21 Proteasome subunit
      7e-11   41.1   0.0    5.2e-10   38.3   0.0    2.4  2  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.0   1.1e-44   7.4e-41       3     190 .]      34     219 ..      32     219 .. 0.96

  Alignments for each domain:
  == domain 1    score: 139.4 bits;  conditional E-value: 1.1e-44
                  C--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHH..STTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
   PF00227.21   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktllekly..kedltleeavelavkalkealerdklsgknvevavi 190
                   G t+v+ +gk+ vv++++k+++  + l+++s+v  +f+++++++++++G ++D+r+   r+r+ea++++++yg+p++v  l+kr+a++ q+ytq++  r +   ++++ vd+e+gpql+++dp+G+++ +  a++ G  ++ a+++lek+       + +++ + a+ al+++l  d ++++++e +vi
  MMETSP0890-20130614|10269_1  34 SGLTCVATRGKEAVVMVTQKKVP--DRLVDPSSVTNLFQVTPKLAVMTTGRTPDCRAQLTRLRYEANEFKFQYGYPMPVAALAKRIADICQVYTQKASLRALASVCILGAVDDENGPQLFKVDPAGHFFPY-LATSAGAKENEANNFLEKKIddLASYDTDQTTRYAIAALQSVLSSD-FKSSEIEAVVI 219
                  689********************..**********************************************************************************************************.6*****889***********666779999***************77.99999999886 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   7.6e-14   5.2e-10       1      22 [.       7      28 ..       7      28 .. 0.98
   2 ?   -0.8   0.0      0.13   8.6e+02      13      17 ..      67      71 ..      67      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 7.6e-14
                 T---TT--------HHHHHHHH CS
    PF10584.4  1 YDrslTtFSPdGRLfQVEYAlk 22
                 YD ++++FSP G+LfQVEYA+k
  MMETSP0890-20130614|10269_1  7 YDHHISVFSPAGKLFQVEYAIK 28
                 9*******************98 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.13
                 --HHH CS
    PF10584.4 13 RLfQV 17
                 +LfQV
  MMETSP0890-20130614|10269_1 67 NLFQV 71
                 59**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.86
# Mc/sec: 685.47
//
Query:       MMETSP0890-20130614|10272_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.45s 00:00:00.82 Elapsed: 00:00:01.07
# Mc/sec: 206.04
//
Query:       MMETSP0890-20130614|10270_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:01.17
# Mc/sec: 897.10
//
Query:       MMETSP0890-20130614|10268_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   28.0   9.5    1.4e-06   28.0   6.6    2.1  2  PF00170.16 bZIP transcription factor
    4.3e-05   23.1  11.5    4.3e-05   23.1   8.0    4.1  4  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
        5.2    7.2  17.9      0.033   14.3   2.8    2.9  2  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.4         3   1.4e+04      18      27 ..     137     148 ..     134     152 .. 0.52
   2 !   28.0   6.6   3.1e-10   1.4e-06       3      61 ..     196     254 ..     194     257 .. 0.92

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 3
                  HH..HHHHHHHH CS
   PF00170.16  18 rr..sRqRKkae 27 
                  r+   R +Kkae
  MMETSP0890-20130614|10268_1 137 RKrsVRIKKKAE 148
                  442246666665 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 3.1e-10
                  XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
   PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  e k++rr+++NR++A+  R+RK+a+++ Le  v e +++ +++ +e+++l+   a l++
  MMETSP0890-20130614|10268_1 196 EEKKQRRLIRNRLSAQLHRERKRAYVDYLEGLVRERDEQIRKYEEEVQNLRARNAVLEA 254
                  779***********************************************988887765 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.28   1.3e+03      23      41 ..      20      38 ..      17      44 .. 0.81
   2 ?   -5.6   4.6         3   1.4e+04      17      38 ..     139     160 ..     134     169 .. 0.68
   3 !   23.1   8.0   9.4e-09   4.3e-05       2      52 ..     195     246 ..     194     247 .. 0.96
   4 !    6.5   1.1    0.0014       6.4      29      48 ..     237     256 ..     233     260 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.28
   PF07716.10 23 kkakeeeleervkeLeeeN 41
                 kk k+ee++ +++  ++e+
  MMETSP0890-20130614|10268_1 20 KKDKMEETQVKIEPIMKEI 38
                 8999999999998777776 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 3
   PF07716.10  17 rrsRekkkakeeeleervkeLe 38 
                  r  R kkka++++  e   +++
  MMETSP0890-20130614|10268_1 139 RSVRIKKKAEKKKGDEGTDDMK 160
                  3479999999877655555555 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 9.4e-09
   PF07716.10   2 ddeyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                  ++e+++rR  rNr +A+  Re+k+a+ ++le  v e  e++ + +++v++L+
  MMETSP0890-20130614|10268_1 195 EEEKKQRRLiRNRLSAQLHRERKRAYVDYLEGLVRERDEQIRKYEEEVQNLR 246
                  79***********************************************997 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0014
   PF07716.10  29 eleervkeLeeeNaqLrqkv 48 
                  + ee+v++L+++Na L++++
  MMETSP0890-20130614|10268_1 237 KYEEEVQNLRARNAVLEAQL 256
                  5699************9986 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   4.1         1   4.6e+03      57     114 ..     101     171 ..      51     214 .. 0.59
   2 ?   14.3   2.8   7.2e-06     0.033       9      92 ..     221     368 ..     215     424 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1
    PF10152.4  57 d.........elpappaaarrsggpppppgaraeaaaqeaeaaraetpaeqe....pealaegrltvrkdp 114
                  +         +++ + +++ + ++ +p+++araeaa + +   +++++++++      ++++   t+ +d+
  MMETSP0890-20130614|10268_1 101 HsipstyvmdNTTGIVPQTMTIEDLNPEAAARAEAARKRSVRIKKKAEKKKGdegtDDMKRKRAKTQMEDE 171
                  13344444445666666666666666666656666655555444444444445555333333333333444 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.2e-06
    PF10152.4   9 vqfLNrFsaecEskLveiersLqqlElklqlLeakL..asidgleeledqd................................................................elpappaaarrsggpppppgaraeaaaqeaeaara 92 
                  v+ L+ + +e ++++ ++e+++q+l ++  +Lea+L  a + + ee +  +                                                                 +p+ +a+++    ppppp+++ +++++ + a+++
  MMETSP0890-20130614|10268_1 221 VDYLEGLVRERDEQIRKYEEEVQNLRARNAVLEAQLgvATVSSDEERS--QtdnsldaggtptyhnkkrarttgsrvatallaavscvalltsnrmqpitmpssleqgddysnamVVPQDTARRKLLAMPPPPPPSTTKTPPPSEHAQSE 368
                  788999999***************************554444444433..234789999999999999999***********************99999999999999999988733333333333344444444333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       990  (0.0724108); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.38s 00:00:01.33 Elapsed: 00:00:01.22
# Mc/sec: 1070.50
//
Query:       MMETSP0890-20130614|10277_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   25.2   0.1    6.5e-05   22.7   0.1    2.3  1  PF01625.16 Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   4.8e-09   6.5e-05       3     118 ..      56     197 ..      54     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.8e-09
   PF01625.16   3 avlaggCfWgveavfeklk........GVisvevGYagg..evenpt...Yeevcsgk.........tghaEaveveydpekvsyeellevffeihdptqlnrqgndigtqYrsaifytdeeqkkeaeelieklqke......v 118
                  ++++ gCfW v++ +   +          +++++GYagg  + ++p+    + vc ++          ghaEav+v+   + v   e ++ + + +d + +   + d+g +Yrs+i     +     ++++e lq++      +
  MMETSP0890-20130614|10277_1  56 VYFGVGCFWHVQHEMAMAEknilgrsdMELTATAGYAGGlsTGKDPSrpgKSLVCYHNlqriadygsLGHAEAVRVKVPASTV--PEFTKEYAKLFDKQGDRPDKGDRGLEYRSVIGLPGGQSSPFYNQVKEILQDAkglnlmT 197
                  89***********999887777766543356789*****87555554333455666555666666669*********987766..5899********999999*************9999999988888888888874445440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:01.02
# Mc/sec: 624.93
//
Query:       MMETSP0890-20130614|10273_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-42  145.3   0.0    2.3e-42  144.6   0.0    1.3  1  PF01507.14 Phosphoadenosine phosphosulfate reductase family
    1.4e-06   28.0   0.3    1.7e-05   24.5   0.2    2.4  1  PF00462.19 Glutaredoxin


Domain annotation for each model (and alignments):
>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   3.3e-46   2.3e-42       2     174 .]     110     285 ..     109     285 .. 0.95

  Alignments for each domain:
  == domain 1    score: 144.6 bits;  conditional E-value: 3.3e-46
                  EEEE-----HCHHHHHHHHHHCTTHEEEEEE-TT--HHHHHHHHHHHHHTCTEEEEEE-SS-HCHHHHHHH...-HHHH.......HHHHHHTHHHHHHHHHHTT-SEEE----TTS--GGCCSSSEEE-TTS.S-EEE-TTTT--HHHHHHHHHHCT--B-CCCC--------CCCT-S CS
   PF01507.14   2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyee.......aaeriaKveplkkaLekldedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctga 174
                  lv+s+s+G++s+Vllh+a+++ ++ p++++dtg+ ++et+ f   l++r++l+l vy+++++ a++++ ++   +l+++        +  ++Kv p++kaL++l++ all+G+Rr ++ +r++l+ +   +++ +++rv+Pll Wt edv +y++++++py+pL ++gf siG+ ++t+a
  MMETSP0890-20130614|10273_1 110 LVMSTSFGMQSAVLLHMATRICPNLPIIWIDTGYLHRETYLFARHLAKRLELNLYVYQSDISAARMEALHG---QLWNNdddtshrVYGVLRKVAPMNKALRDLNARALLSGVRRGQTDHRKTLQRIVYHDSQ-RHYRVHPLLFWTDEDVDAYMTKHKLPYHPLKRKGFVSIGDKHSTKA 285
                  79*********************************************************************...7888888899988999*****************************99998887777774.49****************************************9975 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.2   2.5e-09   1.7e-05       2      60 .]     395     477 ..     394     477 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.5e-09
                  EEEE-STSHHHHHHHHHHHHTTHHEEEEETTTCHHHHHHHHHHH........................SSBSSSEEEETTEEE CS
   PF00462.19   2 vvftkptCpyCkkakrlLdelgvkyeeidvdedpeireelkels........................gwrtvPqvfidgehi 60 
                  ++++++ C++C +a r+L+ + ++y+ +      +++ +l+  +                          +tvPq+f dg++i
  MMETSP0890-20130614|10273_1 395 EIYGRDSCKFCEAACRVLTARDISYKWRTMQRFNQATGKLEPAVidgihsvsrahvqrrvdhvapgspPIETVPQIFLDGDYI 477
                  79****************************999955555555555556666699999999*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:01.05
# Mc/sec: 1282.62
//
Query:       MMETSP0890-20130614|10281_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-29  100.9   6.2    4.4e-15   55.2   0.6    2.0  2  PF13424.1  Tetratricopeptide repeat
    1.6e-20   72.1   4.8      8e-12   44.5   0.0    3.0  3  PF13374.1  Tetratricopeptide repeat
    2.6e-14   52.5   1.9    7.1e-08   31.8   0.1    2.1  2  PF13414.1  TPR repeat
    2.2e-11   42.5   0.7    8.3e-06   25.1   0.0    3.1  3  PF13176.1  Tetratricopeptide repeat
    7.7e-11   40.9   6.3    3.4e-07   29.4   0.2    3.0  3  PF00515.23 Tetratricopeptide repeat
      5e-09   36.4   3.9    2.1e-05   24.9   0.4    2.0  2  PF13432.1  Tetratricopeptide repeat
    5.7e-09   35.1   5.4    6.5e-06   25.5   0.2    3.0  3  PF07719.12 Tetratricopeptide repeat
    7.1e-07   28.7   0.6     0.0027   17.3   0.0    2.2  2  PF07720.7  Tetratricopeptide repeat
    1.1e-05   25.1   1.7      0.025   14.6   0.1    3.2  2  PF13431.1  Tetratricopeptide repeat
    4.6e-05   23.5   1.9     0.0017   18.7   0.0    2.8  3  PF13428.1  Tetratricopeptide repeat
    7.5e-05   22.6   1.0      0.045   14.0   0.0    2.4  2  PF07721.9  Tetratricopeptide repeat
    0.00025   21.0   0.0     0.0025   17.8   0.0    2.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    0.00028   20.3   2.6     0.0049   16.4   0.1    2.4  3  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.026   14.2   0.0      0.026   14.2   0.0    1.9  3  PF04212.13 MIT (microtubule interacting and transport) domain
       0.03   14.6   3.4      0.098   13.0   0.1    2.5  2  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.3   1.1e-17   9.8e-15      27      78 .]       3      55 ..       1      55 [. 0.96
   2 !   55.2   0.6   4.9e-18   4.4e-15       8      65 ..      26      84 .]      26      84 .] 0.97

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 1.1e-17
    PF13424.1 27 lyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                 lye+al +  ++lg++h+++a+ ln la l++a+g+ydeA +++e+A+ei +k
  MMETSP0890-20130614|10281_1  3 LYERALRIhEEKLGPNHHQVATGLNGLAKLLQAQGKYDEAMPLYERAIEILKK 55
                 8*******999***************************************986 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 4.9e-18
    PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeA 65
                 ln la +l+++g+ydeA  lye+a+e+  +++g+dh  +a+ ln la l++++g+ydeA
  MMETSP0890-20130614|10281_1 26 LNGLAKLLQAQGKYDEAMPLYERAIEIlKKVHGPDHSHVATGLNGLAGLLQQQGKYDEA 84
                 799************************88899**************************9 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   2.4e-05     0.021      23      41 ..       2      20 ..       1      21 [. 0.93
   2 !   44.5   0.0   8.8e-15     8e-12       1      41 [.      22      62 ..      22      63 .. 0.96
   3 !   14.5   0.1   2.4e-05     0.022       1      21 [.      64      84 .]      64      84 .] 0.95

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-05
    PF13374.1 23 aleeealairrrllGddHP 41
                 +l+e+al i+++ lG++H 
  MMETSP0890-20130614|10281_1  2 PLYERALRIHEEKLGPNHH 20
                 89****************6 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 8.8e-15
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
                 +a+ ln LA +l+a+g+y+eA +l+e+a +i ++++G+dH 
  MMETSP0890-20130614|10281_1 22 VATGLNGLAKLLQAQGKYDEAMPLYERAIEILKKVHGPDHS 62
                 6888************************************5 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 2.4e-05
    PF13374.1  1 taaalnnLAlalrargryeeA 21
                 +a+ ln LA +l+++g+y+eA
  MMETSP0890-20130614|10281_1 64 VATGLNGLAGLLQQQGKYDEA 84
                 6888****************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   5.8e-09   5.3e-06      25      67 ..       3      52 ..       1      54 [. 0.84
   2 !   31.8   0.1   7.8e-11   7.1e-08       5      57 ..      25      84 .]      21      84 .] 0.82

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 5.8e-09
    PF13414.1 25 ayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAlel 67
                 +ye+Al++      pn+ +    +++lA++++ +g +y+eA+  ye+A+e+
  MMETSP0890-20130614|10281_1  3 LYERALRIHeeklgPNHHQvatGLNGLAKLLQAQG-KYDEAMPLYERAIEI 52
                 69****9754555599866666*************.6************97 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 7.8e-11
    PF13414.1  5 alkelGnalfkegdydeAieayekAleld.....pnn...aelyynlAlaylklgkdyeeA 57
                  l+ l+  l  +g+ydeA  +ye+A+e+      p++   a  +++lA +++++g +y+eA
  MMETSP0890-20130614|10281_1 25 GLNGLAKLLQAQGKYDEAMPLYERAIEILkkvhgPDHshvATGLNGLAGLLQQQG-KYDEA 84
                 57889999********************54555555433477*************.6*998 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.023        21      21      34 ..       3      16 ..       2      18 .. 0.63
   2 !   25.1   0.0   9.1e-09   8.3e-06       2      29 ..      26      53 ..      25      60 .. 0.87
   3 !    9.7   0.1   0.00074      0.67       2      18 ..      68      84 .]      67      84 .] 0.94

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.023
    PF13176.1 21 lyeraLaltkdpld 34
                 lyeraL+++++ l+
  MMETSP0890-20130614|10281_1  3 LYERALRIHEEKLG 16
                 67777777666554 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 9.1e-09
    PF13176.1  2 llnLarlysrlgdyekAielyeraLalt 29
                 l+ La+l +++g+y++A  lyera+++ 
  MMETSP0890-20130614|10281_1 26 LNGLAKLLQAQGKYDEAMPLYERAIEIL 53
                 789********************87665 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00074
    PF13176.1  2 llnLarlysrlgdyekA 18
                 l+ La l +++g+y++A
  MMETSP0890-20130614|10281_1 68 LNGLAGLLQQQGKYDEA 84
                 789*************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.12   1.1e+02      24      32 ..       4      12 ..       2      14 .. 0.83
   2 !   29.4   0.2   3.7e-10   3.4e-07       2      30 ..      24      52 ..      23      55 .. 0.93
   3 !   11.6   0.2   0.00016      0.14       2      20 ..      66      84 .]      65      84 .] 0.91

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.12
                 HHHHHHHHT CS
   PF00515.23 24 yekALelnP 32
                 ye+AL++ +
  MMETSP0890-20130614|10281_1  4 YERALRIHE 12
                 9****9975 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 3.7e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  2 kalynlGnaylklgkydeAleyyekALel 30
                   l++l+ +++ +gkydeA   ye+A+e+
  MMETSP0890-20130614|10281_1 24 TGLNGLAKLLQAQGKYDEAMPLYERAIEI 52
                 5799************************8 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHTT-HHHH CS
   PF00515.23  2 kalynlGnaylklgkydeA 20
                   l++l+ +++++gkydeA
  MMETSP0890-20130614|10281_1 66 TGLNGLAGLLQQQGKYDEA 84
                 57999*************9 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.7e-06    0.0025      14      58 ..       5      50 ..       2      62 .. 0.64
   2 !   24.9   0.4   2.3e-08   2.1e-05       3      50 ..      29      84 .]      27      84 .] 0.93

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.7e-06
    PF13432.1 14 deAlaaleaalala.PeaaeallllaeallrlgrldeAaallraal 58
                 ++Al+++e+ l  +  + a  l +la +l ++g++deA  l+++a+
  MMETSP0890-20130614|10281_1  5 ERALRIHEEKLGPNhHQVATGLNGLAKLLQAQGKYDEAMPLYERAI 50
                 4444444333333345578888888888888888888888888887 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 2.3e-08
    PF13432.1  3 lArallraGdydeAlaaleaalala.....Pe...aaeallllaeallrlgrldeA 50
                 lA++l ++G+ydeA +++e+a++       P+    a  l +la +l ++g++deA
  MMETSP0890-20130614|10281_1 29 LAKLLQAQGKYDEAMPLYERAIEILkkvhgPDhshVATGLNGLAGLLQQQGKYDEA 84
                 89***********************9999966666********************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.33     3e+02      23      31 ..       3      11 ..       2      14 .. 0.81
   2 !   25.5   0.2   7.1e-09   6.5e-06       2      30 ..      24      52 ..      23      55 .. 0.92
   3 !    9.6   0.1    0.0009      0.82       2      20 ..      66      84 .]      65      84 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.33
                 HHHHHHHH- CS
   PF07719.12 23 afekAleld 31
                 ++e+Al++ 
  MMETSP0890-20130614|10281_1  3 LYERALRIH 11
                 6999*9986 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 7.1e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  2 ealynlGlayyklgdyeeAleafekAlel 30
                  +l+ l++++ ++g+y+eA  ++e+A+e+
  MMETSP0890-20130614|10281_1 24 TGLNGLAKLLQAQGKYDEAMPLYERAIEI 52
                 67999**********************98 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.0009
                 HHHHHHHHHHHHTT-HHHH CS
   PF07719.12  2 ealynlGlayyklgdyeeA 20
                  +l+ l+ ++ ++g+y+eA
  MMETSP0890-20130614|10281_1 66 TGLNGLAGLLQQQGKYDEA 84
                 67999*************9 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     3e-06    0.0027       6      32 ..      28      52 ..      25      56 .. 0.82
   2 !   10.2   0.1   0.00049      0.44       6      20 ..      70      84 .]      67      84 .] 0.89

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3e-06
                 HHHHHHHHTT-HHHHHHH..HHHHHHH CS
    PF07720.7  6 slAaefynkkkyqeArelfsYallail 32
                 +lA  +++++ky+eA  l  Y+ +  +
  MMETSP0890-20130614|10281_1 28 GLAKLLQAQGKYDEAMPL--YERAIEI 52
                 79**************99..7766555 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00049
                 HHHHHHHHTT-HHHH CS
    PF07720.7  6 slAaefynkkkyqeA 20
                 +lA  +++++ky+eA
  MMETSP0890-20130614|10281_1 70 GLAGLLQQQGKYDEA 84
                 678899********9 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.7e-05     0.025       1      32 [.       3      42 ..       3      43 .. 0.85
   2 !    7.9   0.1     0.004       3.6       1      32 [.      45      84 .]      45      84 .] 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.7e-05
    PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeA 32
                 lye+al+++     Pn+   a  +n LA+ll+++G+++eA
  MMETSP0890-20130614|10281_1  3 LYERALRIHeeklgPNHhqvATGLNGLAKLLQAQGKYDEA 42
                 7999999995666666688899999*************99 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.004
    PF13431.1  1 lyekalel.....dPnn...adaynnLAelllnnGdleeA 32
                 lye+a+e+      P++   a  +n LA ll+ +G+++eA
  MMETSP0890-20130614|10281_1 45 LYERAIEIlkkvhGPDHshvATGLNGLAGLLQQQGKYDEA 84
                 68888888544432776777888999***********998 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.8   1.6e+03      23      32 ..       3      12 ..       2      27 .. 0.65
   2 !   18.7   0.0   1.9e-06    0.0017       4      33 ..      26      60 ..      22      68 .. 0.80
   3 ?    3.5   0.1      0.14   1.3e+02       4      20 ..      68      84 .]      64      84 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.8
    PF13428.1 23 llrralalaP 32
                 l++ral+ + 
  MMETSP0890-20130614|10281_1  3 LYERALRIHE 12
                 6788887543 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.9e-06
    PF13428.1  4 llalarallalGdpdeAiallrrala.....laPd 33
                 l  la +l a+G +deA+ l++ra++     ++Pd
  MMETSP0890-20130614|10281_1 26 LNGLAKLLQAQGKYDEAMPLYERAIEilkkvHGPD 60
                 6689********************98554545555 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.14
    PF13428.1  4 llalarallalGdpdeA 20
                 l  la +l ++G +deA
  MMETSP0890-20130614|10281_1 68 LNGLAGLLQQQGKYDEA 84
                 56899**********98 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     5e-05     0.045       5      26 .]      27      48 ..      23      48 .. 0.89
   2 !    7.3   0.1    0.0073       6.6       6      20 ..      70      84 .]      65      84 .] 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5e-05
                 ---HHHHHH-------HHHHHT CS
    PF07721.9  5 laLArallalGdldeAraller 26
                  +LA +l+a+G +deA  l er
  MMETSP0890-20130614|10281_1 27 NGLAKLLQAQGKYDEAMPLYER 48
                 579*************999987 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0073
                 --HHHHHH------- CS
    PF07721.9  6 aLArallalGdldeA 20
                 +LA +l+++G +deA
  MMETSP0890-20130614|10281_1 70 GLAGLLQQQGKYDEA 84
                 7999**********9 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.7e-06    0.0025      31      77 ..      29      84 .]       2      84 .] 0.52

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.7e-06
                 HHHHHHH---H.......HHHHHHHHC.TSHCHCBHHHHH.HHHHHHHHTT-HHHH CS
    PF12895.2 31 lAlclylngey.......krAyellrk.leldssslgcry.llArcllklgkydeA 77
                 lA+ l+ +g+y       +rA+e+l+k +  d s++++ +  lA  l ++gkydeA
  MMETSP0890-20130614|10281_1 29 LAKLLQAQGKYdeamplyERAIEILKKvHGPDHSHVATGLnGLAGLLQQQGKYDEA 84
                 57777777777444444444444443344444444333333446677777777776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.8   6.2e+03      24      30 ..       4      10 ..       3      12 .. 0.73
   2 !   16.4   0.1   5.4e-06    0.0049       4      30 ..      26      52 ..      23      56 .. 0.90
   3 ?    3.9   0.1     0.054        49       6      20 ..      70      84 .]      65      84 .] 0.81

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 6.8
                 HH---HH CS
    PF13181.1 24 lekalel 30
                 +e+al +
  MMETSP0890-20130614|10281_1  4 YERALRI 10
                 7788776 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 5.4e-06
                 TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                 ++ l++++   G+yd+A+  +e+a+e+
  MMETSP0890-20130614|10281_1 26 LNGLAKLLQAQGKYDEAMPLYERAIEI 52
                 67799********************98 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.054
                 T---HHHHTT-HHHH CS
    PF13181.1  6 nlGdiYrqlGdydkA 20
                  l+ ++ q G+yd+A
  MMETSP0890-20130614|10281_1 70 GLAGLLQQQGKYDEA 84
                 5667899******98 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.6   5.1e+03      21      26 ..       4       9 ..       3      15 .. 0.56
   2 ?   14.2   0.0   2.9e-05     0.026      18      37 ..      36      55 ..      25      59 .. 0.92
   3 ?   -2.4   0.1       4.4     4e+03      17      24 ..      77      84 .]      76      84 .] 0.83

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5.6
                 HHHHHH CS
   PF04212.13 21 yeeAle 26
                 ye Al+
  MMETSP0890-20130614|10281_1  4 YERALR 9 
                 455554 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.9e-05
                 TT-HHHHHHHHHHHHHHHHH CS
   PF04212.13 18 agkyeeAlelYkeAlelLlq 37
                 +gky+eA  lY+ A+e+L +
  MMETSP0890-20130614|10281_1 36 QGKYDEAMPLYERAIEILKK 55
                 79****************87 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 4.4
                 HTT-HHHH CS
   PF04212.13 17 eagkyeeA 24
                 ++gky+eA
  MMETSP0890-20130614|10281_1 77 QQGKYDEA 84
                 57999998 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00011     0.098       6      28 ..      29      51 ..      28      54 .. 0.93
   2 ?    2.3   0.1      0.29   2.6e+02       7      19 ..      73      84 .]      70      84 .] 0.67

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                 la++++++g++deA+ ++er i+
  MMETSP0890-20130614|10281_1 29 LAKLLQAQGKYDEAMPLYERAIE 51
                 89999999************997 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHH CS
    PF13174.1  7 alsyyklgdtdeA 19
                 +l+++ +g++deA
  MMETSP0890-20130614|10281_1 73 GLLQQ-QGKYDEA 84
                 45555.56***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 261.42
//
Query:       MMETSP0890-20130614|10278_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.81
# Mc/sec: 1245.51
//
Query:       MMETSP0890-20130614|10282_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.75
# Mc/sec: 194.90
//
Query:       MMETSP0890-20130614|10280_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.73
# Mc/sec: 1047.18
//
Query:       MMETSP0890-20130614|10284_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-09   37.1   0.7    7.2e-09   35.5   0.5    1.9  1  PF04286.7  Protein of unknown function (DUF445)
  ------ inclusion threshold ------
      0.099   11.7   0.0       0.64    9.1   0.0    2.0  2  PF03437.10 BtpA family


Domain annotation for each model (and alignments):
>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.5   1.1e-12   7.2e-09       6      70 ..     125     185 ..     123     305 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.1e-12
    PF04286.7   6 iGgladwfAikaLFRhPlgglpiPfttglIPknkdriakklgefVeehLLtpeslakkLkedeva 70 
                   Gg+++w+A+k+LF +    +p+ +  g+IP++ ++i ++l  ++ + + ++e l+  ++e +v+
  MMETSP0890-20130614|10284_1 125 AGGITNWLAVKMLFDR----VPLLVGSGVIPRRFKEILQALKTMILDTFFEEEFLRTYINERKVS 185
                  5*************74....666688*****************************9999998876 PP

>> PF03437.10  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   9.3e-05      0.64     189     250 ..     128     189 ..     103     191 .. 0.80
   2 ?   -0.4   0.0     0.073     5e+02      79     110 ..     245     275 ..     237     297 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 9.3e-05
   PF03437.10 189 leelklaketvk.vpvlvgsGvneenvekllkiadGvivgtsikkdGkianevdkervrkive 250
                  + +  ++k + + vp lvgsGv  +  +++l++   +i+ t + ++      +++ +v+ +++
  MMETSP0890-20130614|10284_1 128 ITNWLAVKMLFDrVPLLVGSGVIPRRFKEILQALKTMILDTFFEEEFL-RTYINERKVSLLAS 189
                  5555677778888****************************9988765.77788888887765 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.073
   PF03437.10  79 vsiplGinvLrndavaalaiAyavgadFiRvn 110
                  + i +G+ +L       ++iA +++   iR +
  MMETSP0890-20130614|10284_1 245 MLIAVGVELLH-TITHNFDIADVIDVTTIRDE 275
                  56889999999.77788999999999888844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.74
# Mc/sec: 990.93
//
Query:       MMETSP0890-20130614|10285_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-17   62.9   0.0    2.7e-17   62.6   0.0    1.0  1  PF01738.13 Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0     2e-21   2.7e-17       3     218 .]      42     262 ..      40     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 2e-21
   PF01738.13   3 aylatpknagkapavvviqeifGvn.knirdiarrlaeeG.yvalapdlYarqgldandtaeaasalrellkkr.eeavlddlkaainylkslpevstkkvgvvGfClGGalalllAaenpevdaavafYG......altlekpleeaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpgagHaFaadsre..sydeaaaedawervleffkqll 218
                  +y+a p+++    +++vi ++fG     i+ ++++la +    + +pd+Y + + +a+    +++a+  l++ +  +++ + l+  ++ lk+       k+g +GfC+G   +++lAae   +++av+ ++        + e++ ++aa++k+p+ ++ +++Dp +    +  + + +++++ +++   +p+ +H+ + ++++     +    +a e+ + ffk++l
  MMETSP0890-20130614|10285_1  42 YYVAPPEAS--TMGILVIYDVFGFSgGRIKSVCDSLALATnAHVCMPDVYDGTEINAKGGFGNTEAMAWLKSVTeFSTLSKLLEPGLECLKAKG---ATKIGAIGFCWGVYGVVKLAAEPGLLSVAVGCHPslkigdMFFQESEDSQAANVKCPLCIMPAGNDPDMYRP-TGSIPKIVQANGIECKSIDFPEMQHGWVPRGDAsqPAVARDVLKAIEEAVAFFKKYL 262
                  355555555..9**************9**********999777888********6666666666677666555544566666677777777777...789***********************************986678999999******************9999.5999999*9*******************99999434444445578889999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.44s 00:00:00.94 Elapsed: 00:00:00.82
# Mc/sec: 768.59
//
Query:       MMETSP0890-20130614|10283_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-42  143.7  12.2    1.5e-41  142.0   8.5    1.7  1  PF00909.16 Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   8.5   1.1e-45   1.5e-41     149     378 ..       2     217 ..       1     236 [. 0.84

  Alignments for each domain:
  == domain 1    score: 142.0 bits;  conditional E-value: 1.1e-45
                  ------TTHHHHHH----------------...--S--GSBHHHHH---HHHH--------------SHHHHH.HHHHHHHHHHHHH-------TTT-.-------------------.TTT------------------------C....HHHHHHTS-HTTGG-----------------TTSTT-------------..-HHHHHHHHHHHHHHH---TTT---HHHHHH--- CS
   PF00909.16 149 DfAgstvVHlvggvagLaaalvlgkregrfegkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrararaavtTllAaaagaltallisrlke.gkinvlglanGilAGlVAi.TaacavvepwgAliiGlvAgvlsvlgvk....klkeklkidDsldvvavHgvgGiwGllavgifaaekvvaskisggllsgegkqlvvqligilvilayafvvtlilllllklllgL 378
                  D++g +++H +g+++gLa+a+++gk ++     +e++ + ++ f+++Gt++Lw++W++F +g +l++ +++++ra+v+T+l++ ++++ta ++s l +  +++ ++++n++lAG+V+i  +a+  + p+gAl+iG+ Ag+l+++g++    +l+  ++++D+++v ++Hg+++i G+l+++++             ++s +g    +ql    + la++++v++ ++ l+++l++ 
  MMETSP0890-20130614|10283_1   2 DYGGTIIIHEFGAYFGLACAYMIGKPKDAS---KEKSSTVSDVFSIIGTAFLWIYWPSFVSG-TLPIGSISAQRAIVNTILSLLGATVTAFALSPLVNeMRLSPVHAQNATLAGGVSIgVTANLNLGPFGALLIGSGAGFLCTIGYAyvqpLLEAMIGLHDTCGVGNLHGMSSIFGALVSALLPI-----------WISDAG-APKTQL----AGLAMTLAVAIPSGALTGKLMTF 217
                  ***************************987...8999999*******************977.57888888888*****************9998876367*****************9999999**********************99999***************************998744...........555555.333444....34444445555666666666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.56s 00:00:00.97 Elapsed: 00:00:00.88
# Mc/sec: 667.17
//
Query:       MMETSP0890-20130614|10287_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0027   17.1   8.2      0.083   12.5   0.6    3.0  2  PF02178.14 AT hook motif
  ------ inclusion threshold ------
       0.15   11.6   2.7       0.22   11.0   1.9    1.2  1  PF14075.1  Ubinuclein conserved middle domain


Domain annotation for each model (and alignments):
>> PF02178.14  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.6   1.2e-05     0.083       3      11 ..      42      50 ..      40      51 .. 0.86
   2 !    7.4   0.8   0.00055       3.7       2       8 ..      74      80 ..      73      81 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
   PF02178.14  3 kRGRPrKaa 11
                 +RGRPrK+ 
  MMETSP0890-20130614|10287_1 42 PRGRPRKNF 50
                 8******95 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00055
   PF02178.14  2 rkRGRPr 8 
                 ++RGRP+
  MMETSP0890-20130614|10287_1 74 KPRGRPP 80
                 8*****8 PP

>> PF14075.1  Ubinuclein conserved middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.9   3.3e-05      0.22     126     157 ..      24      55 ..      11      60 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.3e-05
    PF14075.1 126 alqeeeekekeenaekkpkvkl....PrkkFqWnee 157
                  ++    e+++++++e+kp vk+    Prk F+Wn e
  MMETSP0890-20130614|10287_1  24 EM----EEDEDDDEEEKPVVKQprgrPRKNFEWNAE 55 
                  12....2222556666675554111279******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.88
# Mc/sec: 471.10
//
Query:       MMETSP0890-20130614|10291_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-39  135.8   0.5    1.2e-39  135.5   0.4    1.0  1  PF00080.15 Copper/zinc superoxide dismutase (SODC)
  ------ inclusion threshold ------
      0.031   13.9   0.3       0.05   13.3   0.2    1.5  1  PF13594.1  Amidohydrolase


Domain annotation for each model (and alignments):
>> PF00080.15  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.4   1.8e-43   1.2e-39       3     142 .]      18     160 ..      14     160 .. 0.96

  Alignments for each domain:
  == domain 1    score: 135.5 bits;  conditional E-value: 1.8e-43
                  EEEE..---EEEEEEEEESSTTS-EEEEEEEB------B--EEE-----.SS--TT---B-----------GGCS--------B-------BEEEEECSS-BHH---CHH--EEEEE-----T......HHCC------EEEE-EE CS
   PF00080.15   3 aelktadgkvkGtvtftqksgesgvevtvelkgltpgkhgfhiHekgdcesngcksagghynpekkkhggpsdekrhaGDlgnievdadGeakleitddrlslkgeesiiGrslvihageddl......tsqptGnaGarlaCgvI 142
                  ++l+  ++ v+G  t++q s+es ++++++++gltpg hg+h+H +gd  s+g +sagg +np  k+hg+p++++r +GDlgniev +dG+++++i d+ ++l g++siiGrs++i ageddl       s++tGn G+r+a gv+
  MMETSP0890-20130614|10291_1  18 CVLT--GEGVSGVLTLSQPSEESATRIDGTINGLTPGLHGIHVHIFGDF-SQGLTSAGGIFNPFAKNHGAPDADDRMVGDLGNIEVAEDGSCTIHIEDSLVKLIGPHSIIGRSIIIFAGEDDLgrggheLSLTTGNPGPRVAGGVV 160
                  5555..7789**********9999*************************.*********************9999*******************************************************************9997 PP

>> PF13594.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   7.3e-06      0.05      15      56 ..      33      67 ..      21     107 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.3e-06
                 ----SSCEEEEE----EEE---EEEEE--STEETTCC.S-TH CS
    PF13594.1 15 epldadaeeviDaegkivlPGfiDaHtHlrepleegadrese 56
                 +p +++a++ iD++   ++PG+  +H+H+      +   +++
  MMETSP0890-20130614|10291_1 33 QPSEESATR-IDGTINGLTPGLHGIHVHIF----GDF--SQG 67
                 444555666.9*99888***********54....444..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 549.17
//
Query:       MMETSP0890-20130614|10290_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-38  128.5  33.6    1.1e-05   24.7   0.0    9.6  9  PF02493.15 MORN repeat
  ------ inclusion threshold ------
      0.052   13.4   0.1       0.12   12.2   0.1    1.6  1  PF01436.16 NHL repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   6.3e-05      0.43       1      18 [.     264     282 ..     264     282 .. 0.94
   2 !   13.5   0.5   5.8e-06      0.04       1      14 [.     289     302 ..     289     305 .. 0.96
   3 !   24.2   0.1   2.4e-09   1.6e-05       1      22 [.     314     335 ..     314     336 .. 0.96
   4 !    8.8   0.0   0.00019       1.3       1      17 [.     337     353 ..     337     355 .. 0.95
   5 !   24.1   0.1   2.4e-09   1.6e-05       1      17 [.     360     376 ..     360     382 .. 0.91
   6 !   24.7   0.0   1.6e-09   1.1e-05       1      22 [.     383     404 ..     383     405 .. 0.97
   7 !   19.0   0.1     1e-07    0.0007       1      22 [.     406     427 ..     406     428 .. 0.96
   8 !   18.0   0.2   2.1e-07    0.0015       1      19 [.     429     447 ..     429     450 .. 0.97
   9 !    4.6   0.1    0.0038        26       1      14 [.     452     465 ..     452     465 .. 0.97

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6.3e-05
                  EE-EE.ETTEEE-EEEB-- CS
   PF02493.15   1 YeGeW.knGkrhGkGvytw 18 
                  YeG+    G+rhG G++++
  MMETSP0890-20130614|10290_1 264 YEGTVnEAGLRHGVGTCIY 282
                  9999999**********87 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 5.8e-06
                  EE-EEETTEEE-EE CS
   PF02493.15   1 YeGeWknGkrhGkG 14 
                  Y GeW+ G+ hGkG
  MMETSP0890-20130614|10290_1 289 YRGEWRLGREHGKG 302
                  99***********9 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 2.4e-09
                  EE-EEETTEEE-EEEB------ CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                  Y G++++Gk+hG+G+++ ++Gd
  MMETSP0890-20130614|10290_1 314 YLGDFVDGKMHGSGTCYLANGD 335
                  78*******************8 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.00019
                  EE-EEETTEEE-EEEB- CS
   PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                  Y G+ +++ r+GkG+y+
  MMETSP0890-20130614|10290_1 337 YVGDLRENARQGKGKYI 353
                  99**************6 PP

  == domain 5    score: 24.1 bits;  conditional E-value: 2.4e-09
                  EE-EEETTEEE-EEEB- CS
   PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                  Y+GeW++++rhG G++t
  MMETSP0890-20130614|10290_1 360 YIGEWRENQRHGRGTFT 376
                  9***************9 PP

  == domain 6    score: 24.7 bits;  conditional E-value: 1.6e-09
                  EE-EEETTEEE-EEEB------ CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                  Y GeW++++r+GkG ++ pdG+
  MMETSP0890-20130614|10290_1 383 YTGEWQRDLRNGKGELRLPDGT 404
                  9********************8 PP

  == domain 7    score: 19.0 bits;  conditional E-value: 1e-07
                  EE-EEETTEEE-EEEB------ CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                  Y G++  ++ +GkG +t+pdG 
  MMETSP0890-20130614|10290_1 406 YHGTFLSNQIDGKGECTYPDGQ 427
                  99*******************6 PP

  == domain 8    score: 18.0 bits;  conditional E-value: 2.1e-07
                  EE-EEETTEEE-EEEB--- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwp 19 
                  Y+G +knG+r+G G ++wp
  MMETSP0890-20130614|10290_1 429 YQGIFKNGLRQGRGNLQWP 447
                  9*****************8 PP

  == domain 9    score: 4.6 bits;  conditional E-value: 0.0038
                  EE-EEETTEEE-EE CS
   PF02493.15   1 YeGeWknGkrhGkG 14 
                  YeG ++++  +G+G
  MMETSP0890-20130614|10290_1 452 YEGRFRDDHIDGSG 465
                  ************98 PP

>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.8e-05      0.12       6      24 ..     327     346 ..     326     346 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
                  EEEE-TT--EEEEE.GCCTE CS
   PF01436.16   6 GvavdsdGdvyVaD.senhr 24 
                  G ++  +Gd+yV+D +en r
  MMETSP0890-20130614|10290_1 327 GTCYLANGDLYVGDlRENAR 346
                  99*************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1576  (0.115272); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:01.00
# Mc/sec: 1289.24
//
Query:       MMETSP0890-20130614|10292_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-52  175.5   0.0    3.5e-38  130.6   0.0    2.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    4.9e-10   39.9   0.3    0.00053   20.2   0.0    3.0  2  PF13191.1  AAA ATPase domain
    3.8e-07   29.6   0.4     0.0049   16.4   0.0    2.7  2  PF13245.1  Part of AAA domain
    4.3e-07   29.9   6.0     0.0083   16.1   0.1    4.5  2  PF13401.1  AAA domain
    7.6e-07   28.6   0.0    0.00095   18.5   0.0    2.4  2  PF00158.21 Sigma-54 interaction domain
      2e-06   27.7   0.0    0.00044   20.1   0.0    2.9  2  PF07724.9  AAA domain (Cdc48 subfamily)
    2.5e-06   26.3   0.0       0.02   13.5   0.0    2.3  2  PF06068.8  TIP49 C-terminus
    1.1e-05   25.1   0.0       0.22   11.2   0.0    3.0  2  PF13173.1  AAA domain
    1.6e-05   25.5   0.1     0.0095   16.6   0.0    2.6  2  PF13207.1  AAA domain
    0.00014   21.6   0.0      0.088   12.5   0.0    3.1  3  PF13671.1  AAA domain
    0.00026   20.6   0.2     0.0092   15.6   0.0    2.7  2  PF07728.9  AAA domain (dynein-related subfamily)
    0.00032   20.0   0.0       0.45    9.7   0.0    2.7  2  PF01695.12 IstB-like ATP binding protein
    0.00042   19.4   0.2      0.004   16.2   0.1    2.2  2  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00075   19.5   0.0       0.11   12.5   0.0    3.0  3  PF00910.17 RNA helicase
    0.00076   18.4   0.3      0.094   11.6   0.0    2.7  3  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0011   19.1   0.0       0.24   11.6   0.0    2.6  2  PF13238.1  AAA domain
     0.0013   17.7   0.1       0.24   10.3   0.0    2.8  2  PF06745.8  KaiC
     0.0031   16.6   0.0        0.9    8.6   0.0    2.5  2  PF02562.11 PhoH-like protein
     0.0036   16.6   1.2       0.96    8.6   0.0    3.2  3  PF13481.1  AAA domain
     0.0062   15.5   0.1       0.94    8.4   0.0    2.5  2  PF06414.7  Zeta toxin
     0.0086   15.8   0.0      0.064   13.1   0.0    2.3  1  PF02359.13 Cell division protein 48 (CDC48), N-terminal domain
  ------ inclusion threshold ------
      0.022   14.2   3.1       0.34   10.3   0.0    3.2  4  PF05729.7  NACHT domain
      0.037   13.5   0.1        2.1    7.7   0.0    2.7  2  PF13604.1  AAA domain
      0.044   12.5   0.0       0.48    9.1   0.0    2.2  2  PF00931.17 NB-ARC domain
      0.044   13.2   0.0       0.24   10.8   0.0    2.1  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.049   13.0   0.3        1.6    8.1   0.0    2.6  2  PF13555.1  P-loop containing region of AAA domain
      0.049   13.1   0.1        2.2    7.7   0.0    2.3  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.051   13.4   0.0        2.3    8.0   0.0    2.4  2  PF13521.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   7.1e-41   3.5e-38       1     131 [.     287     427 ..     287     428 .. 0.93
   2 !   42.2   0.0   1.5e-13   7.5e-11       1     128 [.     570     698 ..     570     702 .. 0.83

  Alignments for each domain:
  == domain 1    score: 130.6 bits;  conditional E-value: 7.1e-41
                  EEEE-------HHHHHHHHHHCT.HEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS......-S.EEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
   PF00004.24   1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakeka......kp.silfiDEidalaksr..sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                  +ll+GppG+GKTl+a+ + k l+ +e   ++g+e+l+kyvg+se+kirelf +a++++      +  +i+++DE+da++k+r   ++ +++++++vnqLl+++dgv++  ++++vig+tnr d++d+a+lr gR++ ++ei+
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNaREPKIVNGPEILDKYVGASEEKIRELFADAEAEQkkagddSMlHIIIFDEMDAICKQRgsVRDGTGVSDSIVNQLLSKIDGVDSL-NNILVIGMTNRKDMIDEAILRpGRLELHVEIG 427
                  89********************956789*************************977777789*9455***************9877899*******************7.66**************************9997 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 1.5e-13
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSS.SST-HHHHHHHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT.S.TEEEEEE-SSGGGS-HHHHH.TTSCCEE CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk.eskvivigatnrpdkldpallr.gRfdrki 128
                  vll+G   tGKT+la a a +++++f+++  ++ +     + ++++i++lf +  ++  p s l+iD+i++l++       +++++v+++Ll  l++   + +++++vi++t  p++  + l   + f++++
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVHSKYPFIRLLSADSViGYSESSKSQHIHKLFLDSYKS--PlSLLLIDDIERLIEYT-PIGPRFSNTVLQTLLVLLKKIPAEeDRRLLVICTTALPRHTLKDLEFiDVFNVIL 698
                  79************************99877777747777788899*****995544..55***********9988.66889999999999999999877656789******99988887777666666665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.5e-05    0.0075      25      49 ..     286     305 ..     274     371 .. 0.82
   2 !   20.2   0.0   1.1e-06   0.00053      10      51 ..     550     592 ..     544     676 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-05
    PF13191.1  25 lllvtGpsGiGKSsLlrelakpill 49 
                   +l++Gp+G+GK+ ++r+     + 
  MMETSP0890-20130614|10292_1 286 GMLLHGPPGCGKTLIARK-----IG 305
                  79***************9.....44 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.1e-06
    PF13191.1  10 eaLlaalrrvsegsp....lllvtGpsGiGKSsLlrelakpiller 51 
                  ++L +++++v+++       +l+tG+s +GK++L+ +   +++ ++
  MMETSP0890-20130614|10292_1 550 DSLNRLVDQVRNSAKtplmTVLLTGESATGKTALAAA---TAVHSK 592
                  56666666666655566888***************99...445555 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     1e-05    0.0049      13      39 ..     287     312 ..     278     321 .. 0.84
   2 !   10.4   0.1   0.00078      0.38       7      33 ..     563     590 ..     557     599 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1e-05
    PF13245.1  13 lvvtGgPGtGKTttlaaiiaallaare 39 
                  +++ G+PG GKT ++a+ i  +l are
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKT-LIARKIGKVLNARE 312
                  677*********.********996644 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00078
    PF13245.1   7 lagnpl..lvvtGgPGtGKTttlaaiiaa 33 
                  ++  pl  +++tG   tGKT+++aa +++
  MMETSP0890-20130614|10292_1 563 AK-TPLmtVLLTGESATGKTALAAATAVH 590
                  55.45555889*************99998 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.7e-05    0.0083       7      42 ..     287     324 ..     281     410 .. 0.63
   2 ?    5.9   1.3     0.023        11       8      37 ..     571     601 ..     563     683 .. 0.51

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.7e-05
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae...karvv.f 42 
                  ++++G++G+GKT+ +r++ + l+ ++   +    ++++ +
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNAREP--KivnGPEILdK 324
                  799***************997754421..12344444442 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.023
    PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaae..k 37 
                  ++tGes +GKT l+   a    ++++++    
  MMETSP0890-20130614|10292_1 571 LLTGESATGKTALAAATAVH-SKYPFIRLlsA 601
                  67888888888887766653.33344444442 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0046       2.3      24      50 ..     286     312 ..     272     319 .. 0.78
   2 !   18.5   0.0     2e-06   0.00095       4      46 ..     548     591 ..     545     605 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0046
                  -EEEE-------HHHHHHHHHTSTTTT CS
   PF00158.21  24 tvlitGesGtGKellAraiheaskrkk 50 
                   +l++G  G+GK+l+Ar+i +  + ++
  MMETSP0890-20130614|10292_1 286 GMLLHGPPGCGKTLIARKIGKVLNARE 312
                  589***************988666555 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2e-06
                  -SHHHHHHHHHHHHHTTS-.S-EEEE-------HHHHHHHHHTS CS
   PF00158.21   4 esealkelleqikkvaktd.ltvlitGesGtGKellAraiheas 46 
                  ++++l++l++q+++ akt+ +tvl+tGes tGK+ lA a   +s
  MMETSP0890-20130614|10292_1 548 AQDSLNRLVDQVRNSAKTPlMTVLLTGESATGKTALAAATAVHS 591
                  678999*************89**************998764444 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.9e-07   0.00044       6     102 ..     287     389 ..     283     393 .. 0.75
   2 ?    4.2   0.0     0.064        31       2     104 ..     566     662 ..     565     715 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8.9e-07
                  EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT--....-EEEETGGG----...------------HHHHHHH CS
    PF07724.9   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegG....ivllDEidKihpk...essgadvSregVqrdLLqi 102
                  +ll gp g+Gkt++a+++ ++l++   ++  +++  e+l     ++e+ + +l   +++ ++++ +     i+ +DE+d i+++    + g  vS   V ++L +i
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNA---REPKIVNGPEILDkyVGASEEKIRELFADAEAEQKKAGDDsmlhIIIFDEMDAICKQrgsVRDGTGVSDSIVNQLLSKI 389
                  6899******************95...55566666666664435667777777776666665554447999************97666667778888777777665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.064
                  ----EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----------------HHHHHHHH- CS
    PF07724.9   2 piisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqile 104
                  p++++ll+g++ +Gkt la a+a + +     ++ir+   +      +e++ s+ i++   +  +     +l+D+i++  + + +g+  S+  V++ LL +l 
  MMETSP0890-20130614|10292_1 566 PLMTVLLTGESATGKTALAAATAVHSKY----PFIRLLSADSVI-GYSESSKSQHIHKLFLDSYKSPLSLLLIDDIERLIEYTPIGPRFSN-TVLQTLLVLLK 662
                  6678999999999999999999988875....666653333333.2345555555555555555555668888888887776667777766.47777776665 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00033      0.16      43      90 ..     276     323 ..     263     338 .. 0.78
   2 !   13.5   0.0   4.1e-05      0.02      47      99 ..     564     616 ..     522     624 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00033
    PF06068.8  43 ikekkla.GravLlaGppgtGktalaiaiskelgedvpfvalsgsevys 90 
                  i++  ++  r++Ll Gppg Gkt +a  i k l++  p  +++g e+  
  MMETSP0890-20130614|10292_1 276 IQQMGIShVRGMLLHGPPGCGKTLIARKIGKVLNAREP-KIVNGPEILD 323
                  55555552499**********************98777.4567777765 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 4.1e-05
    PF06068.8  47 klaGravLlaGppgtGktalaiaiskelgedvpfvalsgse..vyslevkktevl 99 
                  k    +vLl+G+++tGktala a   ++ ++ pf+ l +++  +  +e +k+  +
  MMETSP0890-20130614|10292_1 564 KTPLMTVLLTGESATGKTALAAAT--AVHSKYPFIRLLSADsvIGYSESSKSQHI 616
                  3334579************99875..57899999986443211334566666555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00081       0.4       5      73 ..     287     364 ..     284     411 .. 0.67
   2 !   11.2   0.0   0.00046      0.22       5     104 ..     570     686 ..     567     704 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00081
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrk..ladpellelflek.lke........kkkylflDEiqev 73 
                  +++ Gp ++GKt +++++ k l   ++   +n  +  ++   ++++++ elf +  + e          +++++DE+  +
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLN-AREPKIVNGPEILDKYvgASEEKIRELFADAeA-EqkkagddsMLHIIIFDEMDAI 364
                  5899**************97777.455555555554442211222224444544421.1234555544455999998766 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00046
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe....llelfleklkekkkylflDEiqev...............pewedalkslvddg.rnldviltGsnskllsk 104
                  +++tG   +GKt l+   a + +    ++ +   d +   +++++    +++lfl+++k+  ++l++D i ++               +++   lk++  ++ r+l vi+t  + ++  k
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVHSK--YPFIRLLSAD-SVIGYSESSksqhIHKLFLDSYKSPLSLLLIDDIERLieytpigprfsntvlQTLLVLLKKIPAEEdRRLLVICTTALPRHTLK 686
                  799***********988876655..3444443333.222223222234699*****97777899********988888887777776666666666666644466777777666655555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-05    0.0095       3      33 ..     288     321 ..     287     422 .. 0.68
   2 ?    6.4   0.0     0.027        13       2      32 ..     570     603 ..     569     675 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.9e-05
                  --B--TT---HHHHHHHHHHSTEE...EEEGGGB CS
    PF13207.1   3 aitGppGsGKsTlakeLaerlglp...vlslddl 33 
                  +++GppG+GK+ +a+++ + l+ +   +++  ++
  MMETSP0890-20130614|10292_1 288 LLHGPPGCGKTLIARKIGKVLNARepkIVNGPEI 321
                  689****************998654446666663 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.027
                  E--B--TT---HHHHHHHHHHSTEEE...EEGGG CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpv...lsldd 32 
                  +++tG +++GK+ la + a +  +p    ls d+
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVHSKYPFirlLSADS 603
                  899*************999887777533356665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00018     0.088       3      45 ..     288     333 ..     287     353 .. 0.76
   2 ?   -2.1   0.0       5.8   2.8e+03      99     122 ..     353     376 ..     331     387 .. 0.73
   3 ?    5.3   0.0      0.03        14       2      29 ..     570     597 ..     569     663 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00018
    PF13671.1   3 llvGlpGsGKstlaerllkklg...yvrlsqdtlrkrlfgtdqqsk 45 
                  ll+G+pG+GK+  a+++ k l      +++ +++ ++  g   +++
  MMETSP0890-20130614|10292_1 288 LLHGPPGCGKTLIARKIGKVLNarePKIVNGPEILDKYVGASEEKI 333
                  79*************9966665555899999999888888554444 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 5.8
    PF13671.1  99 vrivylevpeetlreRlakRerng 122
                   +i++++  ++ +++R   R  +g
  MMETSP0890-20130614|10292_1 353 LHIIIFDEMDAICKQRGSVRDGTG 376
                  789999999999**9999998876 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.03
    PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrls 29 
                  vll G +++GK+ la + + + +y +++
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVHSKYPFIR 597
                  7899**********99987777755443 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05    0.0092       2      26 ..     287     312 ..     286     322 .. 0.82
   2 ?    1.9   0.0       0.3   1.5e+02       2      19 ..     570     587 ..     569     599 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-05
                  EEEE------HHHHHHHGGGGB.S-- CS
    PF07728.9   2 vlLvGppGtgKselaerlaeal.nre 26 
                  +lL GppG+gK+ +a+++ ++l  re
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLnARE 312
                  79******************995445 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.3
                  EEEE------HHHHHHHG CS
    PF07728.9   2 vlLvGppGtgKselaerl 19 
                  vlL G++ tgK+ la   
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAAT 587
                  89************9765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00092      0.45      45      69 ..     282     306 ..     262     315 .. 0.82
   2 !    7.2   0.0    0.0056       2.7      49      70 ..     569     590 ..     547     645 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00092
   PF01695.12  45 eqaenlvllGpsGvGKthlAialgv 69 
                   + + ++l Gp+G GKt +A  +g 
  MMETSP0890-20130614|10292_1 282 SHVRGMLLHGPPGCGKTLIARKIGK 306
                  4556899*************99885 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0056
   PF01695.12  49 nlvllGpsGvGKthlAialgve 70 
                   ++l+G s +GKt lA+a +v+
  MMETSP0890-20130614|10292_1 569 TVLLTGESATGKTALAAATAVH 590
                  589*************997654 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   8.2e-06     0.004      24      49 ..     286     311 ..     276     323 .. 0.87
   2 ?    0.3   0.0      0.61     3e+02      25      41 ..     570     586 ..     563     618 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.2e-06
   PF01078.16  24 nlllvGppGsGKtmlakrlpsllppl 49 
                   +ll GppG+GKt++a+++ ++l + 
  MMETSP0890-20130614|10292_1 286 GMLLHGPPGCGKTLIARKIGKVLNAR 311
                  58*****************9999765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.61
   PF01078.16  25 lllvGppGsGKtmlakr 41 
                  +ll+G + +GKt la++
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAA 586
                  89************976 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.6   3.2e+03      31      64 ..      17      50 ..       7      55 .. 0.72
   2 !   12.5   0.0   0.00023      0.11       2      47 ..     288     325 ..     287     361 .. 0.67
   3 ?    3.2   0.0      0.17        85       1      58 [.     570     636 ..     570     644 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 6.6
   PF00910.17 31 kdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64
                 k+++ + +++ +    Yt+q ++ i D+ + k++
  MMETSP0890-20130614|10292_1 17 KKQMLTIANSPSKQAAYTNQVYLSIADLDKYKSR 50
                 4555566666666778999999999999888765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00023
   PF00910.17   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgY 47 
                  +l+Gp+g+GK+++a+++ k l       ++++++      +++d+Y
  MMETSP0890-20130614|10292_1 288 LLHGPPGCGKTLIARKIGKVLN-----AREPKIVN---GPEILDKY 325
                  69**************666665.....33344433...44444444 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.17
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl..........klkkkdsvysrnpeddfwdgYtgq.evvvidDf 58 
                  ++l+G+s +GK+ la    +a+ +k+              ++s  s+   + f+d+Y+++   ++idD+
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAA--TAVHSKYpfirllsadsVIGYSESSKSQHIHKLFLDSYKSPlSLLLIDDI 636
                  5799**********998..66666666666555554333333444444455566666643144555555 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00019     0.094      53      86 ..     287     321 ..     277     329 .. 0.82
   2 ?   -3.2   0.0       6.2     3e+03      10      48 ..     407     448 ..     400     493 .. 0.61
   3 ?    3.9   0.0     0.042        21      32      75 ..     548     592 ..     524     643 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
    PF05496.7  53 vllyGpPGlGkttlakiiakelgve.lkvtsgPvl 86 
                  +ll+GpPG Gkt +a+ i k l+++  k+  gP +
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNARePKIVNGPEI 321
                  79*****************9999752678888865 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 6.2
    PF05496.7  10 eeeevekslrPksleey..igqekvkeklkif.ieaakkree 48 
                  ++   e+ lrP +le +  ig  +   +l+i+ i++a +re+
  MMETSP0890-20130614|10292_1 407 KDMIDEAILRPGRLELHveIGLPDEAGRLQILeIKTASMRES 448
                  556667778888776652256666677777644777777764 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.042
    PF05496.7  32 vkeklkifieaakk.reealdhvllyGpPGlGkttlakiiakelg 75 
                   +++l+ +++  ++  + +l  vll+G    Gkt+la   a   +
  MMETSP0890-20130614|10292_1 548 AQDSLNRLVDQVRNsAKTPLMTVLLTGESATGKTALAAATAVHSK 592
                  5556665565554415678999***************98886655 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00048      0.24       3      23 ..     289     314 ..     288     375 .. 0.63
   2 ?    4.8   0.0     0.061        30       1      17 [.     570     586 ..     570     631 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00048
    PF13238.1   3 itGtpGvGKtTlakeLaerl.....g 23 
                  + G+pG+GKt +a+++ + l     +
  MMETSP0890-20130614|10292_1 289 LHGPPGCGKTLIARKIGKVLnarepK 314
                  89**************8766333331 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.061
    PF13238.1   1 IlitGtpGvGKtTlake 17 
                  +l+tG +++GKt la +
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAA 586
                  79**********99976 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00048      0.24      12      37 ..     276     302 ..     258     304 .. 0.90
   2 ?    4.1   0.0     0.039        19      21      38 ..     569     586 ..     557     593 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00048
    PF06745.8  12 l.kgGipegrvvlitGepGtGKtifal 37 
                  + + Gi + r +l+ G pG+GKt++a 
  MMETSP0890-20130614|10292_1 276 IqQMGISHVRGMLLHGPPGCGKTLIAR 302
                  44689*******************986 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.039
    PF06745.8  21 vvlitGepGtGKtifalq 38 
                  +vl+tGe+ tGKt +a+ 
  MMETSP0890-20130614|10292_1 569 TVLLTGESATGKTALAAA 586
                  79***********99975 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.018         9      22      40 ..     287     305 ..     270     316 .. 0.81
   2 !    8.6   0.0    0.0018       0.9      21      42 ..     569     590 ..     545     594 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.018
   PF02562.11  22 vfaiGpaGtGKTylavala 40 
                  ++++Gp G+GKT++a  ++
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIG 305
                  6789**********97765 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0018
   PF02562.11  21 ivfaiGpaGtGKTylavalave 42 
                   v+++G++ tGKT la a+av+
  MMETSP0890-20130614|10292_1 569 TVLLTGESATGKTALAAATAVH 590
                  68899***************97 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.053        26      36      50 ..     287     301 ..     271     312 .. 0.87
   2 ?    0.4   0.0      0.67   3.3e+02     124     172 ..     331     385 ..     302     401 .. 0.76
   3 !    8.6   0.0     0.002      0.96      36      56 ..     570     590 ..     546     596 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.053
    PF13481.1  36 tllaGapgtGKStla 50 
                  +ll G+pg+GK+ +a
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIA 301
                  6899********988 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.67
    PF13481.1 124 alltadlerllaaieeleg...pdlvviDtlsrlvgg..densnsdv.gaviaal 172
                  +++ + +++ +a+ ++  +   ++++++D +++++ +  ++ + ++v ++++++l
  MMETSP0890-20130614|10292_1 331 EKIRELFADAEAEQKKAGDdsmLHIIIFDEMDAICKQrgSVRDGTGVsDSIVNQL 385
                  445556656566555544477799*********9998877777777767776665 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.002
    PF13481.1  36 tllaGapgtGKStlalqlaaa 56 
                  +ll+G++ tGK+ la+++a++
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVH 590
                  79*****************98 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0019      0.94      19      51 ..     287     319 ..     280     347 .. 0.84
   2 ?    4.4   0.0     0.031        15      14      40 ..     564     591 ..     552     604 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0019
    PF06414.7  19 vllgGqpGAGKtslaellleelaagnivridaD 51 
                  +ll G+pG+GKt +a+++ + l+a+++ ++++ 
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNAREPKIVNGP 319
                  7899**************999987777666665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.031
    PF06414.7  14 ekpka.vllgGqpGAGKtslaellleel 40 
                  ++p + vll G  + GKt+la ++    
  MMETSP0890-20130614|10292_1 564 KTPLMtVLLTGESATGKTALAAATAVHS 591
                  555432899************9987765 PP

>> PF02359.13  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00013     0.064       2      84 ..      21     111 ..      20     113 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00013
   PF02359.13   2 LrVaeapddedvgrgivrvspedmeelgleegdvveiegkr......k.tvaivwparpede.gkgiIrmdgvtRknagvsigdeVtvrka 84 
                  L++a++p+++ + ++ v++s +d+++ + +  d  +   k+      + +   v++a  + + +  + +++ ++R+ a++ +g++V+v ++
  MMETSP0890-20130614|10292_1  21 LTIANSPSKQAAYTNQVYLSIADLDKYKSRAPDQGLGDAKKvllylsSgSGDWVFTAVGDGKmDIATLGVSTLQRRTAQLELGQRVEVIPF 111
                  8999**********************9999988666665551111111133455555555557889999*******************876 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0007      0.34       3      27 ..     287     311 ..     285     317 .. 0.83
   2 ?   -2.7   0.0       6.8   3.3e+03      85     100 ..     356     371 ..     340     397 .. 0.67
   3 ?    2.8   0.0      0.15        72       2      19 ..     569     586 ..     568     594 .. 0.88
   4 ?   -2.8   0.1       7.6   3.7e+03      84     111 ..     630     658 ..     612     703 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0007
    PF05729.7   3 vilqGeaGsGKTtLlqklasawakg 27 
                  ++l+G++G+GKT  ++k+ + + ++
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNAR 311
                  79***************97766655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 6.8
    PF05729.7  85 lilDglDelvsdlgql 100
                  +i+D +D ++++ g +
  MMETSP0890-20130614|10292_1 356 IIFDEMDAICKQRGSV 371
                  7888888888877763 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.15
    PF05729.7   2 tvilqGeaGsGKTtLlqk 19 
                  tv+l+Ge+  GKT+L++ 
  MMETSP0890-20130614|10292_1 569 TVLLTGESATGKTALAAA 586
                  799************986 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 7.6
    PF05729.7  84 LlilDglDelvsdlgq.lkekqpvrtlLs 111
                  Ll++D++++l +  +  +   + v + L 
  MMETSP0890-20130614|10292_1 630 LLLIDDIERLIEYTPIgPRFSNTVLQTLL 658
                  67888888776644443223333333333 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0043       2.1      11      50 ..     277     316 ..     273     363 .. 0.84
   2 ?    2.7   0.0      0.15        71      14      44 ..     563     592 ..     556     615 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0043
    PF13604.1  11 eavltsgdrvavvqGpAGtGKttvlkalrealeaagkrvv 50 
                  +++  s+ r ++++Gp+G GKt + + + ++l+a++ ++v
  MMETSP0890-20130614|10292_1 277 QQMGISHVRGMLLHGPPGCGKTLIARKIGKVLNAREPKIV 316
                  555666778899*******************999875554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.15
    PF13604.1  14 ltsgdrvavvqGpAGtGKttvlkalrealea 44 
                  ++++   ++++G   tGKt + +a ++++++
  MMETSP0890-20130614|10292_1 563 AKTPLMTVLLTGESATGKTALAAA-TAVHSK 592
                  5566667899********976554.444444 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00097      0.48      19      41 ..     284     306 ..     274     312 .. 0.84
   2 ?    0.7   0.0      0.34   1.7e+02       3      40 ..     550     588 ..     548     650 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00097
                  SEEEEEE-------HHHHHHHTS CS
   PF00931.17  19 lkvvglvGmgGvGKttlakqvyk 41 
                  +  + l+G +G+GKt +a+++ k
  MMETSP0890-20130614|10292_1 284 VRGMLLHGPPGCGKTLIARKIGK 306
                  55689**************9965 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.34
                  HHHHHHHHHHHTTT.SSSEEEEEE-------HHHHHHHT CS
   PF00931.17   3 kevekviekLleee.eelkvvglvGmgGvGKttlakqvy 40 
                  +++++++++  ++    l  v l G    GKt la++  
  MMETSP0890-20130614|10292_1 550 DSLNRLVDQVRNSAkTPLMTVLLTGESATGKTALAAATA 588
                  566777777776654667789999*********997643 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0005      0.24       2      39 ..     287     324 ..     286     367 .. 0.84
   2 ?   -1.0   0.0       2.3   1.1e+03       2      30 ..     570     598 ..     569     638 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0005
    PF07726.6   2 vllegvPGlaktllvkalakaldlefkriqftpdllPs 39 
                  +ll+g PG +ktl++++++k+l+++  +i   p++l  
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNAREPKIVNGPEILDK 324
                  699*********************99999998888865 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.3
    PF07726.6   2 vllegvPGlaktllvkalakaldlefkri 30 
                  vll+g   ++kt l+ a a + +  f r+
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVHSKYPFIRL 598
                  799999999****9999888777777665 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.3   1.4e+02      22      37 ..     285     298 ..     275     307 .. 0.83
   2 ?    8.1   0.0    0.0033       1.6      25      43 ..     569     587 ..     557     590 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.3
    PF13555.1  22 kgkntlltGasGsGKS 37 
                  +g  +ll G+ G GK+
  MMETSP0890-20130614|10292_1 285 RG--MLLHGPPGCGKT 298
                  44..9**********6 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0033
    PF13555.1  25 ntlltGasGsGKSTllDAi 43 
                  ++lltG+s  GK+ l  A 
  MMETSP0890-20130614|10292_1 569 TVLLTGESATGKTALAAAT 587
                  69**********9998775 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0046       2.2      18      44 ..     287     315 ..     272     327 .. 0.81
   2 ?    2.7   0.0      0.17        83      16      34 ..     568     586 ..     554     593 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0046
   PF02367.12  18 vlLsGdlGaGKTtlvkglakglgvkg..e 44 
                  +lL+G+ G GKT +++ ++k l+ ++   
  MMETSP0890-20130614|10292_1 287 MLLHGPPGCGKTLIARKIGKVLNAREpkI 315
                  68******************998876433 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.17
   PF02367.12  16 dvvlLsGdlGaGKTtlvkg 34 
                  + vlL+G+ ++GKT l+ +
  MMETSP0890-20130614|10292_1 568 MTVLLTGESATGKTALAAA 586
                  5699**********99865 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0048       2.3       4      35 ..     289     326 ..     287     361 .. 0.70
   2 ?    2.7   0.1       0.2        96       2      25 ..     570     594 ..     569     604 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0048
    PF13521.1   4 itGgpstGKTtlleaLa....argypvv..pEvarevl 35 
                  + G+p++GKT +++++     ar+ ++v  pE+  +++
  MMETSP0890-20130614|10292_1 289 LHGPPGCGKTLIARKIGkvlnAREPKIVngPEILDKYV 326
                  78***********9886444466666666677666665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.2
    PF13521.1   2 ivitGgpstGKTtlleaLaar.gyp 25 
                  + +tG + tGKT l++a a + +yp
  MMETSP0890-20130614|10292_1 570 VLLTGESATGKTALAAATAVHsKYP 594
                  789************9987665565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:01.01
# Mc/sec: 1888.61
//
Query:       MMETSP0890-20130614|10295_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 535.85
//
Query:       MMETSP0890-20130614|10294_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-78  261.9   0.8    2.5e-78  261.8   0.6    1.0  1  PF01251.13 Ribosomal protein S7e


Domain annotation for each model (and alignments):
>> PF01251.13  Ribosomal protein S7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.8   0.6   1.8e-82   2.5e-78       1     189 [.       5     191 ..       5     192 .] 0.98

  Alignments for each domain:
  == domain 1    score: 261.8 bits;  conditional E-value: 1.8e-82
   PF01251.13   1 kkilkkkeekpseleksvaqalldlEsnskdlkaelrelkissakeievskkkkavvifvPvpllkayrkiqqrLvrELEKkfsgkhvvlvaqRrilpkpkrksrtkkkqkrprsrTltaVhdaiLedlvyPaeivGkRirvkldGskllkvfLDkkekkeveeklesfsavykkltgkdvvfefpeee 189
                  kki k+++e+p+ele+sv q + +lE    dlkael++l+i sa+eie++++kk+++ifvP+ llk y+k+q+rLvrELEKkfsg+hv+++aqR+il k+ ++  tk+k  rprsrTlt VhdaiLedlvyP+eivGkR+r+k+dGsk+lkv+LD k++ +ve+kl++fs vykklt+k+v fefp +e
  MMETSP0890-20130614|10294_1   5 KKIQKPNGEEPDELETSVVQEMHNLEIAG-DLKAELKDLYILSAREIEIGGGKKSIIIFVPFGLLKSYHKCQARLVRELEKKFSGRHVMIIAQRTILGKNYNR-STKNKGPRPRSRTLTHVHDAILEDLVYPTEIVGKRTRCKMDGSKVLKVLLDPKDQVTVETKLDTFSYVYKKLTNKEVIFEFPVSE 191
                  69*************************99.*********************************************************************9998.5569*****************************************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.76
# Mc/sec: 605.40
//
Query:       MMETSP0890-20130614|10293_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.9e-135  448.5   0.1   1.3e-134  448.1   0.1    1.1  1  PF00224.16 Pyruvate kinase, barrel domain
    5.4e-15   54.8   2.8    1.7e-14   53.2   1.9    1.9  1  PF02887.11 Pyruvate kinase, alpha/beta domain
    0.00016   20.5   0.6    0.00044   19.0   0.2    1.8  2  PF03328.9  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PF00224.16  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.1   0.1  2.8e-138  1.3e-134       2     342 ..      28     371 ..      27     377 .. 0.96

  Alignments for each domain:
  == domain 1    score: 448.1 bits;  conditional E-value: 2.8e-138
                  --SEEEEEE--TTTSHHHHHHHHH----EEEEETT---HHHHHHHHHHHHHHHHTT.TTS-EEEEE----------B--...---SB------EEEEE--CCCTTB--TTEEE-S-TTHHHHS----EEEE----EEEEEEE----E.EEEEEEE---B------B---------SS-HHHHHHH.H---TT--SEEEETTE-SHHHHHHHHHH-----.--SEEEEEE-S----TTHHHHHHH----EEE-------S-CCCHHHHHHHH---TTT-----EEESSTTGGGGTSSS--CHHHHHHHHHHH----EEEE---------HHHHHHHHHHHHHHHHHCS CS
   PF00224.16   2 rrtkivctlGPasesvekleklieaGlnvvRlnfshGsheehkeridnvreaeekl.gkkvaillDtkGpeiRtgllkd...gkkeielkegdkllvstdeklkkegdkekiavdyknlvkdvevGktilvdDGvlslkvlevddekelkvevenegvlssrkgvnlpgtkvdlpalsekDkadl.kfgvkqgvdliaasfvRkaedvkevRevleekg.keikiiakienqegvenldeileasdgimvaRGDlGieipaekvvlaqkllikkcnlagkpvitatqmlesmiknPrptRaevsDvanavldGaDavmLsgetakGkyPveavkamaevaleaekal 342
                  +rt+++ct+GP+s +ve l  l+++G+nv RlnfshG+h+ hk++i +++ea +   g ++ai+lDtkGpeiRtg+++    g  ++el++g+kl+++td   k++    k+a +yk+l   v++G++ilv+DG l lkvl+++++ e+++ev n+  +++rk++nlpg+ vdlp l  kD +dl +fgv  +vd++aasfv +a+d++ +R+ l+e+g ++iki++kienqeg++n+d+i+ + d+imvaRGDlG+eip ekv+ aqk +i+ c +agkpv++atqmlesmi+nPrptRae sDvanavldGaDavmLsgeta Gk+P+eav +m++++ eae++ 
  MMETSP0890-20130614|10293_1  28 KRTRVICTVGPSSWTVEGLGMLLDNGMNVCRLNFSHGDHDTHKRTISRLKEALALRpGVECAIMLDTKGPEIRTGFFAPpleGG-KLELQTGQKLILTTDYDHKSN--GTKLACTYKKLPLSVKAGNQILVADGSLVLKVLSTNQTDEVECEVLNDCAIGERKNMNLPGVVVDLPVLQPKDIKDLqEFGVPMNVDMVAASFVQNADDLRFIRKTLDEAGgQNIKIMSKIENQEGLDNFDDIVANCDAIMVARGDLGMEIPPEKVFRAQKSMISTCTKAGKPVVVATQMLESMINNPRPTRAECSDVANAVLDGADAVMLSGETAGGKFPKEAVSIMSRTCCEAESQF 371
                  89*************************************************988761556****************97433233.6**************999977..7789************************************************************************945*******************************99****************************************************************************************************************************976 PP

>> PF02887.11  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   1.9   3.6e-18   1.7e-14       2     100 ..     394     502 ..     393     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 3.6e-18
                  HHHHHHHHHHHHHHT-SEEEEE-----HHHHHHHT--SSEEEEEES-HHHHH--T.EEE--ETTE-SHHCHC..........HHHHHHHHHHHHHHTTS--SSSEEEEEE CS
   PF02887.11   2 eaiaeaaveaAkelgakaIvvltesGstarlvskyrpgvpIlavtpseetarqla.lvwGvhplvgkerais..........tdeviaealraalkkglikkgdevvvta 100
                  ea+a aav+aAk++gak  vv+ ++G ta+ ++ky++ +p ++vt s+++ar+++ lv G  +l++++++ +             ++ ea+++a+  ++i ++ ++v   
  MMETSP0890-20130614|10293_1 394 EATAAAAVQAAKSCGAKVLVVFAQTGATALTIAKYKSPIPHIVVTSSPQVARYCHgLVAGSKVLCLPNHT-RygfdhksgddEAIMVVEAVKFATSLKIITESSDIVCAL 502
                  89*************************************************************9888888.6699999997777788999*********99888887544 PP

>> PF03328.9  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   9.7e-08   0.00044      79     185 ..     210     304 ..     192     333 .. 0.74
   2 ?   -2.1   0.0      0.28   1.3e+03      16      32 ..     332     348 ..     327     352 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 9.7e-08
                  G..HHHTT--EEEESS--SHHHHHHHHHHTSHTT-----CHHH-EEEEB--SHHHHHTHHHHHTSTTEEEEB---HHHHHH---TS---SHHHHHHHHHHHHHHHH--- CS
    PF03328.9  79 e..vldagaqgvlvPkvetaeevrevvkilrypekgirganketcllaqiESaegvknadeIaavegldgvalGaeDlsadlglkrspegpevleartrilaaakaagi 185
                  +   +   ++ v   +v++a+++r + k l ++        ++++++  iE +eg++n d+I+a    d+++++  Dl +++        ++v+ a+++++ ++ +ag 
  MMETSP0890-20130614|10293_1 210 QefGVPMNVDMVAASFVQNADDLRFIRKTLDEAG------GQNIKIMSKIENQEGLDNFDDIVA--NCDAIMVARGDLGMEIPP------EKVFRAQKSMISTCTKAGK 304
                  4455666777788888999999998888888884......699*******************86..68999******9998743......4466666666666666665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.28
                  HHHCG--SEEEEESSTS CS
    PF03328.9  16 kaaiagaDsvliDlEda 32 
                  +a + gaD+v++ +E a
  MMETSP0890-20130614|10293_1 332 NAVLDGADAVMLSGETA 348
                  66778999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.99
# Mc/sec: 1268.37
//
Query:       MMETSP0890-20130614|10298_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.73    9.1   2.6         20    4.5   0.0    2.8  3  PF08727.6 Poliovirus 3A protein like


Domain annotation for each model (and alignments):
>> PF08727.6  Poliovirus 3A protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0014        20      14      27 ..       2      15 ..       1      18 [. 0.85
   2 ?   -0.3   0.0     0.046   6.2e+02      20      27 ..      25      32 ..      22      36 .. 0.75
   3 ?    3.6   0.0    0.0026        36      14      26 ..      48      60 ..      45      61 .] 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0014
    PF08727.6 14 tPpPeaIsDLLksV 27
                 tPp e I+DL +++
  MMETSP0890-20130614|10298_1  2 TPPAEIITDLKNAI 15
                 8*********8876 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.046
    PF08727.6 20 IsDLLksV 27
                   DLL+s 
  MMETSP0890-20130614|10298_1 25 TIDLLRSL 32
                 57999996 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0026
    PF08727.6 14 tPpPeaIsDLLks 26
                 tPp e I+DL ++
  MMETSP0890-20130614|10298_1 48 TPPAEIITDLKNA 60
                 89*******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.80
# Mc/sec: 182.72
//
Query:       MMETSP0890-20130614|10296_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.5e-127  423.5   5.9   7.4e-127  422.8   4.1    1.3  1  PF00262.13 Calreticulin family
  ------ inclusion threshold ------
      0.048   13.7   0.3       0.12   12.4   0.2    1.7  1  PF07252.6  Protein of unknown function (DUF1433)
        0.4   10.1   2.2       0.37   10.3   0.6    1.5  1  PF08552.6  Inositolphosphorylceramide synthase subunit Kei1
       0.45   10.8  14.9      0.038   14.2   4.4    2.8  2  PF00428.14 60s Acidic ribosomal protein
       0.68    9.5   3.4        1.9    8.1   0.6    2.1  2  PF10805.3  Protein of unknown function (DUF2730)
        1.7    8.9   3.9        1.5    9.0   0.2    2.4  2  PF04277.8  Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> PF00262.13  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.8   4.1  3.2e-130  7.4e-127      47     365 ..      46     362 ..      29     364 .. 0.96

  Alignments for each domain:
  == domain 1    score: 422.8 bits;  conditional E-value: 3.2e-130
   PF00262.13  47 ekdkgLvlkskakhyaisaklekpisnkkkdLvvqYevklqqklecggayiKLlskesdqe.eefssetpyeimFGpdkcgsenkvhfilrkknpktkekeekhlkkkpisrkddklthlYtLiikpdntfeiriDgesvkegslledfepplnppkeIkdpedkKPedWddrekipDpeakkpedwdekepetipdpeavkpedwdedepeyIpDpeakkPedwdeeedgeweapliknpkcekkgcgkwkppliknpkYkgkwkppeikNPnYkgkWkprkipnpdytedkepl.veepigaigfelwsvksdilfdni 365
                   +  +Lvl++++++y i a+      +k+++Lvvq+ev l ++l+cggayiKLl+++s+ + + f+++tp+ +mFGpdkcg+++kvhfi+r++n++++e  e+hlk+ p ++++ k  hlYt ii++d++ ei+iDg+sv +g+l+e+++ppl+pp eI+dp+d+KPedW+d+ kipDp+a+kp+dwde++p+ti+dp+a+kp++w++dep+ IpDp+a++Pedwd++edg weap+i+npkc+  gcg+w++p+i+np+Ykgkw+pp+i+NP+Ykg+W+prkipnp+y+  ++p+ +++piga  +++w+++++i fd +
  MMETSP0890-20130614|10296_1  46 VNTGALVLEEANHFYGIGAPVIPA--FKDDTLVVQFEVTLTDGLNCGGAYIKLLEATSSLDvQAFDDKTPFVLMFGPDKCGMTDKVHFIVRQQNKISGEWIEHHLKDGPKAKTN-KKAHLYTAIISKDDSIEILIDGDSVFTGNLMESLDPPLTPPTEIDDPNDSKPEDWVDKPKIPDPDATKPDDWDEDAPRTIEDPDAEKPQGWLDDEPALIPDPQAERPEDWDDDEDGIWEAPEISNPKCTI-GCGEWTRPIISNPNYKGKWSPPMIDNPAYKGEWAPRKIPNPNYHSVQNPAqNLSPIGAYVVDVWTTNKGITFDSF 362
                  46678**************99765..599*****************************999999**********************************************8766.*********************************************************************************************************************************9.**************************************************888********************87 PP

>> PF07252.6  Protein of unknown function (DUF1433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   5.5e-05      0.12      19      85 ..     329     397 ..     324     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.5e-05
    PF07252.6  19 eiksvkftklekspmgsavieGYiNndke...ldftasistednkqFekdlgyseelgkllkekaksvde 85 
                  +++sv+    + sp+g++v++ +   +k    ++f   +++ d  +F k++  +++l+++l +++k  ++
  MMETSP0890-20130614|10296_1 329 NYHSVQNPAQNLSPIGAYVVDVWTT-NKGitfDSFALGANPDDASDFSKSFFEKKDLEEVLEQQKKEEKK 397
                  7999999999***********9975.455011455666788888*****************988875544 PP

>> PF08552.6  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   0.00016      0.37      74     134 ..     430     490 ..     410     497 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00016
    PF08552.6  74 lllavlYtfDtvltilytliFavdWfldveeaaaaastaasvsatlseatsavssaessaa 134
                  + +a +Y+f t+  +l+t++  ++  +  +++++ + ta+s+++t +e++++++++e++++
  MMETSP0890-20130614|10296_1 430 VKAAPVYAFTTFCVALFTMWLLYSTSYLHKKTKTETATAESADDTAKEDKKKEEEEEEEEE 490
                  56788*************9976655444234444444444444444444444444333333 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.9      0.32   7.3e+02      28      45 ..     377     394 ..     368     437 .. 0.77
   2 ?   14.2   4.4   1.7e-05     0.038      55      80 ..     465     490 ..     447     497 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.32
   PF00428.14  28 kalegkdikeliangsak 45 
                  +++e+kd++e++++ ++ 
  MMETSP0890-20130614|10296_1 377 SFFEKKDLEEVLEQQKKE 394
                  567777777777765543 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.7e-05
   PF00428.14  55 aaaaaaaaaaaaeeekkeeeeeEeed 80 
                  +a a++a   a+e++kkeeeeeEee+
  MMETSP0890-20130614|10296_1 465 TATAESADDTAKEDKKKEEEEEEEEE 490
                  56667777777777777777654444 PP

>> PF10805.3  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.6   0.00083       1.9      27      60 ..     374     407 ..     371     414 .. 0.93
   2 ?    1.6   0.0     0.089     2e+02       2      45 ..     427     469 ..     426     486 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00083
    PF10805.3  27 lskkyakredveklvekieendkrlseletkles 60 
                  +sk++ +++d+e+++e+ ++++k+ ++l+ +les
  MMETSP0890-20130614|10296_1 374 FSKSFFEKKDLEEVLEQQKKEEKKQKKLQERLES 407
                  799**************************99986 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.089
    PF10805.3   2 lesikknwsiilavlavavtlfwlllskkyakredveklvekie 45 
                  +es+k+   +  + + va   +wll s++y +++   +  +++e
  MMETSP0890-20130614|10296_1 427 IESVKAAPVYAFTTFCVALFTMWLLYSTSYLHKKTKTET-ATAE 469
                  5677777777788899999999********988876665.3333 PP

>> PF04277.8  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.55   1.3e+03      34      48 ..     389     403 ..     374     428 .. 0.58
   2 ?    9.0   0.2   0.00067       1.5      20      64 ..     445     489 ..     438     498 .. 0.46

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.55
    PF04277.8  34 kkaapeekaekkaee 48 
                   + ++eek++kk +e
  MMETSP0890-20130614|10296_1 389 EQQKKEEKKQKKLQE 403
                  223333333333332 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00067
    PF04277.8  20 ilLiliisllskvikkaapeekaekkaeeaakaesveekkeddpe 64 
                  ++ +++++  s + kk++ e  ++++a++ ak  +++e++e+++e
  MMETSP0890-20130614|10296_1 445 LFTMWLLYSTSYLHKKTKTETATAESADDTAKEDKKKEEEEEEEE 489
                  333444445555544444444444444444444444443332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1526  (0.111615); expected 273.4 (0.02)
Passed bias filter:                      712  (0.0520772); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:01.09
# Mc/sec: 1097.05
//
Query:       MMETSP0890-20130614|10299_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.76
# Mc/sec: 1087.82
//
Query:       MMETSP0890-20130614|10302_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-86  287.4   0.1    5.3e-52  176.4   0.0    2.0  2  PF01536.11 Adenosylmethionine decarboxylase
    0.00042   20.0   0.3    0.00091   18.9   0.1    1.7  2  PF02675.10 S-adenosylmethionine decarboxylase


Domain annotation for each model (and alignments):
>> PF01536.11  Adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   2.3e-35   1.5e-31       5     101 ..      23     115 ..      19     125 .. 0.93
   2 !  176.4   0.0   7.8e-56   5.3e-52      98     287 ..     162     367 ..     154     405 .. 0.90

  Alignments for each domain:
  == domain 1    score: 109.1 bits;  conditional E-value: 2.3e-35
   PF01536.11   5 gFEGvekrLEisfseaslksdteekgLralskseldevlklveceivssksneeldsyvLsESSlFvskkkiilkTCGTtklLlsiekilklaeals 101
                  +FEG+ek LE+ f++       + +g ral++s ld++l++++cei+s++sn +ld+yvLsESSlFv+++k+++kTCG t+lL ++ ++++la   +
  MMETSP0890-20130614|10302_1  23 AFEGPEKTLEVCFTP----GIGDPRGCRALERSALDKILAEARCEILSKTSNAYLDAYVLSESSLFVYPHKVVIKTCGRTTLLRCLRRLVELATLDT 115
                  7*************8....677889*******************************************************************97655 PP

  == domain 2    score: 176.4 bits;  conditional E-value: 7.8e-56
   PF01536.11  98 ealslkvesvkysrknflfPeaQkaphrsfaeEvevLdkfFg...........ngkayilGsadkdqkwylysasaeps.ekedpdetleilmtgLdkekaskffkdes.......ssaaemtkksgidkilpe.saivsdfeFePCGYSmNaieekeysTiHvTPEdgfSyaSfEtngidlkalnlskliekvlevFkPeefsvtvfvs 287
                  +al l++e+v ysrkn++fP++Q++ph+sf eE+++L+++ +           +g+ y+lG+   d +w++y  ++ ++ +    + t++i+m +L  e+ + f+ ++s       ++++ mt++sg+ +++++ +++v++ +F PCGYSmNa+  ++y+T+HvTPE+++SyaSfEtn   ++  ++ +l+++vl+vFkP++++vt+f+ 
  MMETSP0890-20130614|10302_1 162 HALGLRLEWVGYSRKNYVFPDEQPSPHTSFGEELAYLKAHSKdselagqsaafDGQGYVLGPITGD-HWFVYISDQCERpSFMATERTINIMMFDLADEVRDAFYLQSSeesedliATGKIMTQRSGLASLVHAdKSVVDAHAFAPCGYSMNALCFESYTTVHVTPEKNCSYASFETN---TALKSYGSLVKNVLTVFKPKRVVVTLFAD 367
                  5566899**********************************99***********************.*****887654447779*********************99999999*999************9987515677899************************************...999************************63 PP

>> PF02675.10  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.5   9.9e+03      74      91 ..      92     109 ..      88     118 .. 0.75
   2 !   18.9   0.1   1.3e-07   0.00091      27      99 ..     288     361 ..     265     366 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.5
   PF02675.10  74 vftCgeisplkaleylie 91 
                  + tCg+++ l+ l+ l+e
  MMETSP0890-20130614|10302_1  92 IKTCGRTTLLRCLRRLVE 109
                  678999888888777765 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.3e-07
   PF02675.10  27 aaeaagatvlniafhkfepqGvsvvvllaESHisiHtwpEsg..yaaiDvftCge.isplkaleyliealesdrvt 99 
                  +a+ ++a    +  h f p G s+ +l  ES+ ++H  pE++  ya+++        s  + ++ +   ++++rv 
  MMETSP0890-20130614|10302_1 288 LASLVHADKSVVDAHAFAPCGYSMNALCFESYTTVHVTPEKNcsYASFETN--TAlKSYGSLVKNVLTVFKPKRVV 361
                  55666777777899****************************555555444..44344455566666677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.64
# Mc/sec: 1774.80
//
Query:       MMETSP0890-20130614|10300_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-08   34.0   0.1    7.4e-08   32.4   0.0    1.9  1  PF00645.13 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
    1.3e-05   25.1   0.0    4.1e-05   23.5   0.0    2.0  1  PF00533.21 BRCA1 C Terminus (BRCT) domain
    4.4e-05   23.0   0.0    0.00011   21.7   0.0    1.6  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.033   13.9   0.0      0.096   12.4   0.0    1.8  1  PF12738.2  twin BRCT domain
        3.1    7.1  19.5      0.074   12.4   7.6    2.2  2  PF08597.5  Translation initiation factor eIF3 subunit


Domain annotation for each model (and alignments):
>> PF00645.13  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.7e-11   7.4e-08       1      77 [.     129     223 ..     129     228 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.7e-11
                  EE-S-S--B-S......SS-.-B--SSSEEE------SS--------EEHHHHHTS.SS--S..................-GGGEE---SS-HHHHHHH CS
   PF00645.13   1 eyAksgRakCk......kCk.ekIekgelRigkvvespeedgkskkWrHlgCftek.qlenaketk..............eledldgfeeLkkedqekv 77 
                  e+AksgR++Ck      kC  ++I+ +elR+g++  +    g  ++W+Hl+Cf    ++ +  +                +   l+gf +L+++ + ++
  MMETSP0890-20130614|10300_1 129 ELAKSGRSNCKqtgkakKCMnTNISMNELRLGSLDLE---SGSYTRWNHLSCFRVPnKIWKGLT-NpddanqvdrdlrsmSHVVLSGFAQLPPDARHSL 223
                  79**********9999999889***********9877...5799*********74303333222.1455666667666555555667777777666655 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.5e-08   4.1e-05       3      75 ..     287     367 ..     285     370 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.5e-08
                  TTTTTTCEEEE.........SSTTSSHHHHHHHHHHHCT-EEESSGSSSCSEEEEECCBSHCHHHHHHHHTTCEEEETHHHH CS
   PF00533.21   3 pklFeglkfyi.........gtfdnfnreeleelikelGGkvstevskktthlvvgepelrtlkylaaialnipivneeWll 75 
                  p+++ g++++i         g   n  +++++ l +++G++v+ +vs kt+ l+vg+   + +k+++a  ++i + + ++l+
  MMETSP0890-20130614|10300_1 287 PNILAGKTIVItgtfpelggGAGLNLGKDKAKALCERFGARVTGSVSGKTNILLVGKE-PGFSKVSQARTRGITLTSLDELT 367
                  8999999999998888888888888889999***************************.**************999988886 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     4e-08   0.00011      17      56 ..      40      74 ..      31      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4e-08
                 HHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTS CS
   PF00226.26 17 IkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsd 56
                 +kk ++k +lk HPDk  +d+      f+ i +A+evL+ 
  MMETSP0890-20130614|10300_1 40 VKKGFHKNCLKTHPDK-GGDA----AEFRNIRTAFEVLRE 74
                 79**************.6666....79***********86 PP

>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.5e-05     0.096      13      58 ..     314     360 ..     306     364 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.5e-05
    PF12738.2  13 rkrlqkliralGasiskeltkkvTHLic.kraegeKyekAqkwgipv 58 
                  +++ + l++ +Ga ++++++ k+  L + k+++ +K+++A+++gi+ 
  MMETSP0890-20130614|10300_1 314 KDKAKALCERFGARVTGSVSGKTNILLVgKEPGFSKVSQARTRGITL 360
                  678999*************777776666599999**********986 PP

>> PF08597.5  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.9      0.31   8.6e+02      34      60 ..     230     256 ..     219     275 .. 0.59
   2 ?   12.4   7.6   2.7e-05     0.074      15     103 ..     426     515 ..     420     518 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.31
    PF08597.5  34 kdsWdeeeeeekekekakkaakakakk 60 
                  k++W  e +++++ e++ + +++++  
  MMETSP0890-20130614|10300_1 230 KENWARERKSKAKIESQPSVEEKEQDP 256
                  566665555555444444444443333 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.7e-05
    PF08597.5  15 kkkaavkdkwddE.dededvkdsWdeeeeeekekekakkaakakakkelkakieekekakkekkekekekkeeeldeedeaaekerlrkl 103
                  + k+++++++ d+ d+de+v     +++ ++++k++++ ++++k+k+++ ak + k  akk + + +ke+k ee +   + ++  r r++
  MMETSP0890-20130614|10300_1 426 PVKHPPRNNFIDDdDDDEPVAPPPKKKKASSTAKNTPQDEEPPKKKAKTTAKSKTKPAAKKSTTTTKKEAKAEEQTAIVTTTRSGRTRRA 515
                  344688999988868899999999988888888888888888888888888888888888877777777777788877777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1158  (0.0846987); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.05u 0.44s 00:00:01.49 Elapsed: 00:00:00.90
# Mc/sec: 1384.56
//
Query:       MMETSP0890-20130614|10303_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-36  126.1   0.0    1.6e-36  125.7   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    2.4e-05   23.0   0.0    3.8e-05   22.4   0.0    1.3  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.044   13.6   0.0    1.8  1  PF13460.1  NADH(P)-binding
      0.062   12.0   0.0          2    7.1   0.0    2.5  2  PF02719.10 Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.0   4.8e-40   1.6e-36       2     235 ..      30     268 ..      29     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 125.7 bits;  conditional E-value: 4.8e-40
                  EEE--------HHHHHHHHH-TEEE..EESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---B.SSSC....B-TTS--..--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT....-SHHCHHHHHHHHHH---S.EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE CS
   PF01370.16   2 lVtGatGfiGsalveallekgyevv..nlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkd.aeqp....ikEetpl..gplspYaaaKlageklveayaeeyglnaiilrlfnvyGpr.nfdeevshvipalirkilegee.vtllgdGtqlRdflyveDvaealllvlehgdvageiyni 235
                   V G+ GfiGs l+  l++kgy v+  ++ r+   e ++    + e++ +dl   +++ r+  +     V++lAa  g +  + ++++ ++ +n++++ n leaar +gvkr+ ++sS++vy ++ + +p    +kE +    +p   Y++ Kl++e++   y++ +g+++ + r  nvyGpr   ++ +++  +a++rk++ + + + ++gdG+q R f++++D++e++ ++++ +    + +n+
  MMETSP0890-20130614|10303_1  30 AVGGGGGFIGSWLALDLKKKGYYVIcsDWKRNEFMEVPEF---CDEFHLCDLRVLANCIRMSTGC--RDVYNLAADMGGMGFIkSNESVLMFNNTMISFNCLEAARLNGVKRYFYSSSACVYNENnQLDPnnpgLKEADAWpaKPQDTYGLEKLYAEEMGIVYGRDFGIKFRCARFHNVYGPRgTWKGGREKAPAAFCRKAVCATNeFEMWGDGKQTRSFMFIDDCVEGVQRIMDSDC--EQPLNL 268
                  588********************77766666666554443...4478889999888888888888..***********8888879999999**********************************63333555678888777899999******************************************************77666***************************9887..555555 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.1e-08   3.8e-05       2     156 ..      31     183 ..      30     210 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.1e-08
   PF01073.14   2 VtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdkekleealegvdvvihtaaiidvlg..kaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnG.dEetpyesthkdaYaesKalAEkl 156
                  V Gg+GF+G+ l   L + +  + v   d + ++ +  e+ ++  + ++ +D++  ++  +   g   v  +aa +  +g  k ++  ++  n     n lea++ +gv++  Y+Ssa v  +n + ++   G +E    +++++d Y   K  AE++
  MMETSP0890-20130614|10303_1  31 VGGGGGFIGSWLALDLKKKG--YYVICSDWKRNEFM--EVPEFCDE-FHLCDLRVLANCIRMSTGCRDVYNLAADMGGMGfiKSNESVLMFNNTMISFNCLEAARLNGVKRYFYSSSACVYNENNQLDPNNPGlKEADAWPAKPQDTYGLEKLYAEEM 183
                  78***********9999988..45555555544444..56666555.9*******999999999***9****99888888655555556667778889******************************9999967889999***************97 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.044       1     119 [.      29     161 ..      29     187 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
    PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe.....ssgvtivkkDlfdledlaealagvdvvvdafgarpe.......d......regvk.hlldalkaagvrrlvvvsaaglyrdkpglfelldkplfke 119
                  +av G+ G +G+ ++  l ++g+ v +   + ++  e     +   ++  +Dl  l+    +  g++ v+ +++           +       +++  ++l+a++ +gv+r+++ s+a++y ++++l  + ++p +ke
  MMETSP0890-20130614|10303_1  29 VAVGGGGGFIGSWLALDLKKKGYYVICSDWKRNEFMEvpefcD---EFHLCDLRVLANCIRMSTGCRDVYNLAADMGGmgfiksnEsvlmfnNTMISfNCLEAARLNGVKRYFYSSSACVYNENNQL--DPNNPGLKE 161
                  6788888888888888888888888887744443333222322...45556666666677777789999988876666555655414444544444459***********************99996..445555444 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.019        66      60     127 ..      75     141 ..      29     151 .. 0.62
   2 ?    7.1   0.0   0.00058         2     133     176 ..     168     208 ..     165     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.019
   PF02719.10  60 igdvrdkerleealeelkvdvvfhaAA.lKhVPlveenpleavktNvlgtenvieaaieagvekvvliS 127
                  ++d+r  +++ ++ +  ++  v++ AA +  +  + +n    + +N + + n++eaa  +gv++  + S
  MMETSP0890-20130614|10303_1  75 LCDLRVLANCIRMST--GCRDVYNLAAdMGGMGFIKSNESVLMFNNTMISFNCLEAARLNGVKRYFYSS 141
                  556665555555555..6667777555356777888888888888999999999999999988876655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00058
   PF02719.10 133 nPtnvmGatKrlaekllqalaeeseekktkfvvvRfGNVlgSrG 176
                  +P +++G+ K++ae + + + ++      kf + Rf NV g rG
  MMETSP0890-20130614|10303_1 168 KPQDTYGLEKLYAEEMGIVYGRDF---GIKFRCARFHNVYGPRG 208
                  7999*************9999998...79************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1272.43
//
Query:       MMETSP0890-20130614|10308_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-16   58.6   9.0    7.3e-16   58.1   6.2    1.2  1  PF03188.11 Eukaryotic cytochrome b561
     0.0011   18.9   8.5     0.0021   17.9   5.7    1.6  1  PF13301.1  Protein of unknown function (DUF4079)
  ------ inclusion threshold ------
        1.2    8.4   8.0       0.53    9.5   3.8    1.6  2  PF06570.6  Protein of unknown function (DUF1129)
        3.2    6.8   8.0        1.2    8.3   3.3    1.8  2  PF13346.1  ABC-2 family transporter protein
        6.8    5.9  11.7        2.7    7.2   1.6    2.1  2  PF13567.1  Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PF03188.11  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   6.2   2.7e-19   7.3e-16       2     132 ..      49     172 ..      48     175 .. 0.94

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 2.7e-19
   PF03188.11   2 HpvlmvlgfvllmgeaiLvyrsastrklskktkkllHlvlhllalvlgvvGllavfkfhnekeiknlyslHswlGlltvillllqlllGfvlflapklskkirslllplHvllGlvifvlaivtallGlle 132
                  Hp lm+l f+ l g a L+ +          t++ lH  l +la v + ++++++++++   ++ +++s+Hsw Gl++++ +ll +++G++ +     + k+ +l++  H ++  ++ v+a ++++l++ +
  MMETSP0890-20130614|10308_1  49 HPALMMLSFFSLTGAAALIKKR------GGYTNTKLHGYLMALATVAAGFAFYVIYSNKIMLQKDHFTSWHSWWGLTALLAYLLLFVVGLFGLHPDFGAAKTNKLIRASHKYAARLATVIAWISMILAF-N 172
                  ********************97......3457899***********************************************************888888899999999******************99.4 PP

>> PF13301.1  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   5.7   7.6e-07    0.0021       3     139 ..      45     174 ..      43     182 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.6e-07
    PF13301.1   3 al.lHPvlmillvfpllglalylgwqarrrrlkenlgrwltaavvvavllalavsiaqvellilaltetrkellkaksrdkhyrlgsllltlmvllllggqletyrrtgk.....lfwspHlwaGlalvgLlalsaalvpeiq 139
                  ++ +HP+lm+l+ f l+g+a+    +   +++k + g +          +ala++   + + + ++  ++  l k  + ++h ++g + l+  +ll + g+ ++    g      l+  +H +a  +++++  +s+ l+ +  
  MMETSP0890-20130614|10308_1  45 WFsFHPALMMLSFFSLTGAAALIKKRGGYTNTKLH-GYL----------MALATV--AAGFAFYVIYSNKIMLQKDHFTSWHSWWGLTALLAYLLLFVVGLFGLHPDFGAaktnkLIRASHKYAARLATVIAWISMILAFNKL 174
                  5557********99999999987777777777766.332..........222222..23355566666677777************99999888888888888864433333344********************99987665 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.8   0.00019      0.53      82     164 ..      48     134 ..      35     139 .. 0.76
   2 ?   -1.9   0.0      0.59   1.6e+03     148     167 ..     153     172 ..     135     194 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
    PF06570.6  82 ldnsLlllgifallngitalfskkkqsas.....GlitlllvslvgGlamvyvyriltrskkkkkrppiwkrllilllivvvwlvlft 164
                     +L++l++f+ l+g+ al++k    ++      l++l+ v++ + ++++y ++i+ ++++ ++  ++w  +++l+ ++++++ lf 
  MMETSP0890-20130614|10308_1  48 FHPALMMLSFFS-LTGAAALIKKRGGYTNtklhgYLMALATVAAGFAFYVIYSNKIMLQKDHFTSWHSWWGLTALLAYLLLFVVGLFG 134
                  556889999887.688899999876555556884466677777777777777788988878889999999999999999998888886 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.59
    PF06570.6 148 rllilllivvvwlvlftlvs 167
                    ++ l++v++w+ ++++ +
  MMETSP0890-20130614|10308_1 153 KYAARLATVIAWISMILAFN 172
                  44555666666766666555 PP

>> PF13346.1  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.3   0.00042       1.2      92     194 ..      22     126 ..      19     134 .. 0.61
   2 ?   -1.1   0.0      0.32   8.6e+02      21      30 ..     163     172 ..     147     196 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00042
    PF13346.1  92 igilitllialivslikgnlnisellli..lligliivliflaislPlyfkfgyekgri..iliiiiflifflisaiisinklilsllnlsslilllillliillll 194
                  i +++++ +a +++++ +++ + + +++  +l++l++++++ a    +  + gy ++++  +l+++  ++ ++ + +i +nk++l+  ++ s+  +++l++++  ll
  MMETSP0890-20130614|10308_1  22 ILSVVSYGVA-VSGYLGTKFGTWNWFSFhpALMMLSFFSLTGAA-ALIKKRGGYTNTKLhgYLMALATVAAGFAFYVIYSNKIMLQKDHFTSWHSWWGLTALLAYLL 126
                  4455555554.455555555543333333244444444444444.445667888888887766666666667888888999***********999988887664322 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.32
    PF13346.1  21 lllllilili 30 
                  +++ +il++ 
  MMETSP0890-20130614|10308_1 163 AWISMILAFN 172
                  2222232333 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.3    0.0079        22       6      57 ..      40      96 ..      32     107 .. 0.52
   2 ?    7.2   1.6     0.001       2.7       9      68 ..     110     182 ..     102     190 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0079
    PF13567.1  6 laalaslplgllllalllalllllllflkr.....rkrrrlllllglllllaglyll 57
                 ++ ++++++   l +l ++ l+ ++ + k+      ++ +  l++++ ++++++++ 
  MMETSP0890-20130614|10308_1 40 FGTWNWFSFHPALMMLSFFSLTGAAALIKKrggytNTKLHGYLMALATVAAGFAFYV 96
                 456777777666666665555555555454255543333334444444444444333 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.001
    PF13567.1   9 laslplgllllalllalllllllflkr.............rkrrrlllllglllllaglylllrapqpssndl 68 
                   ++++++ l ++l+ +ll++  lf ++              +++  + l+++++++  ++++  ++  ++++l
  MMETSP0890-20130614|10308_1 110 TSWHSWWGLTALLAYLLLFVVGLFGLHpdfgaaktnklirASHKYAARLATVIAWISMILAFNKLDDDPTHQL 182
                  4567777777777777777777777779999999999998777777888888888888887777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 715.28
//
Query:       MMETSP0890-20130614|10309_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-48  163.1   0.0    8.9e-48  162.6   0.0    1.2  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   6.5e-52   8.9e-48       4     229 .]      51     281 ..      48     281 .. 0.92

  Alignments for each domain:
  == domain 1    score: 162.6 bits;  conditional E-value: 6.5e-52
                  HHHHHHHH.TT---HHHHHHHHHHTT-....--TTTTGGG..STTGGG-------H.HHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-----.--EE----------........--......HHHHHHHHH----HHHHHHH---TT-----TT......................T--...-..-------THHHHHHHH....................--EE-HHHHHHHHSHHHHHHHHHHHH- CS
   PF00141.18   4 dvkaalkadrdmgpsllrlafhdcfvy....gGcdgsvll..lapektapaNaslr.kgldvldaikakleaacpgtvScADlialaardavelaggplvpvslGRrDatessa.sev..snlPdpkasadelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle....................krgllrsDlallsdsetralvekyars 229
                  d+k+++k+ +++gp l+rl +hd++v+    gGc  +v++   a+e t +aNa+l   +l +l++i +k+ +a  g +S ADl++laa++a+e++ggp ++ ++GR Da++ss+ +e+    lPd ++ ad+lrd f  kg++d+ +vaLsGaHtiG++h+    r      +  d  +              + p kfdnsyf+++++                    + ++l sDlall+d+++++++ekya++
  MMETSP0890-20130614|10309_1  51 DLKDLVKT-KECGPILVRLSWHDAGVFkdgeGGCPNAVMRftDAGEGTFGANAGLPdVALGLLEPITKKYADA--GFISNADLWTLAANVAIEEMGGPKIKTRFGRSDAKDSSEsVESqvGRLPDGDKGADHLRDIFYPKGFDDKAIVALSGAHTIGSCHKD---R------SGFDGPWT-------------EAPLKFDNSYFVEMINkkyqaetldngnpqfrdadsNTIMLISDLALLEDEKFKPIAEKYAED 281
                  67788888.9******************************8888999******997589***********995..89*********************77*************9888866778*************************************43...2......22233333.............379**********************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.61
# Mc/sec: 1213.89
//
Query:       MMETSP0890-20130614|10307_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-24   85.4   1.2    3.5e-24   84.8   0.1    1.9  2  PF00447.12 HSF-type DNA-binding
     0.0057   16.3   2.1     0.0057   16.3   1.5    2.6  3  PF12718.2  Tropomyosin like
  ------ inclusion threshold ------
      0.013   15.0   0.6      0.013   15.0   0.4    2.8  3  PF03908.8  Sec20
       0.02   14.4   0.3      0.062   12.9   0.2    1.8  1  PF07558.6  Shugoshin N-terminal coiled-coil region
      0.023   14.5   4.0      0.023   14.5   2.8    1.9  2  PF00170.16 bZIP transcription factor
      0.093   12.9   8.7      0.046   13.9   4.3    1.8  2  PF13476.1  AAA domain
       0.25   11.0   8.9       0.46   10.1   5.6    1.8  2  PF02706.10 Chain length determinant protein
       0.59    8.3   2.6        1.1    7.4   1.8    1.4  1  PF03961.8  Protein of unknown function (DUF342)
        2.4    8.5  12.1       0.17   12.2   0.8    3.3  3  PF13600.1  N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.1   2.3e-27   3.5e-24       2     101 ..      90     184 ..      89     186 .. 0.93
   2 ?   -3.0   0.1       4.8   7.3e+03      22      34 ..     207     219 ..     192     235 .. 0.54

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 2.3e-27
   PF00447.12   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkk 101
                  F++ +y++l+  +  e+i+w+e+g++f+++d+++fa++v pk+F+h+nf+SF+R LnmY+Fhkv  ++++    +k + F+h++Fk+g+ +ll  ++rk 
  MMETSP0890-20130614|10307_1  90 FVRTVYTLLKVCD-PEIITWNEDGTQFIIKDQSRFASEVCPKFFRHRNFNSFTRLLNMYQFHKVPASRRE----SKEVCFEHQNFKRGRDDLLPLVQRKG 184
                  8888999888644.589**************************************************988....889********************985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.8
   PF00447.12  22 sengnsfvvldee 34 
                  ++++++f+v  + 
  MMETSP0890-20130614|10307_1 207 HQQQQQFFVAAMA 219
                  2444455554443 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6      0.65   9.9e+02      24      41 ..      52      69 ..      49      78 .. 0.59
   2 ?   -2.6   1.0       2.6     4e+03      24      31 ..     224     231 ..     196     244 .. 0.52
   3 !   16.3   1.5   3.7e-06    0.0057       7      62 ..     263     321 ..     261     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.65
    PF12718.2 24 KeleqenekkEeeiksLq 41
                 Ke++++++k Ee  ++Lq
  MMETSP0890-20130614|10307_1 52 KEKDDSKRKLEEAANELQ 69
                 555555555555555555 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.6
    PF12718.2  24 Keleqene 31 
                  ++++q+++
  MMETSP0890-20130614|10307_1 224 QAAQQQQQ 231
                  11111111 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 3.7e-06
    PF12718.2   7 lEaenaqekaeeleeklKeleqene...kkEeeiksLqkKnqqlEeevekleeqlkeak 62 
                  ++a +++ ++++le++lK l+qen+   ++E+e++sL++++q+  + + +l++q +  +
  MMETSP0890-20130614|10307_1 263 VDAQDWMSRMTQLESELKSLKQENDrlkSIEDEYASLKQQLQNQSDLIATLQAQANFLN 321
                  58999*************999998622268***********999988888888876655 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.33     5e+02      28      60 ..      51      83 ..      34      86 .. 0.84
   2 ?   -3.6   1.6       5.4   8.2e+03      12      31 ..     220     238 ..     200     244 .. 0.50
   3 ?   15.0   0.4   8.5e-06     0.013      20      65 ..     271     316 ..     263     327 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.33
    PF03908.8 28 leeldastkslekleeeykqvedvlsrskklvk 60
                 l+e d s ++le++ +e++ v+  ++r + lv 
  MMETSP0890-20130614|10307_1 51 LKEKDDSKRKLEEAANELQMVQMAMKRRRCLVA 83
                 6777889999********999999999998885 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 5.4
    PF03908.8  12 aisqllsqevqqSeenleel 31 
                  a +q+ +++ qq ++  ++l
  MMETSP0890-20130614|10307_1 220 A-QQQQAAQQQQQQIDTQTL 238
                  2.222222223333333444 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 8.5e-06
    PF03908.8  20 evqqSeenleeldastkslekleeeykqvedvlsrskklvkklerr 65 
                   + q e  l++l++    l+++e+ey ++++ l+   +l+ +l+ +
  MMETSP0890-20130614|10307_1 271 RMTQLESELKSLKQENDRLKSIEDEYASLKQQLQNQSDLIATLQAQ 316
                  45677889**********************************9987 PP

>> PF07558.6  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   4.1e-05     0.062      20      42 ..     269     291 ..     268     294 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.1e-05
    PF07558.6  20 sikiselekevskLlnENvnLRe 42 
                  + ++++le+e+ +L++EN+ L++
  MMETSP0890-20130614|10307_1 269 MSRMTQLESELKSLKQENDRLKS 291
                  789****************9987 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       7.9   1.2e+04      30      38 ..      60      68 ..      53      76 .. 0.54
   2 ?   14.5   2.8   1.5e-05     0.023      27      63 ..     271     303 ..     269     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 7.9
                 HHHHHHHHH CS
   PF00170.16 30 eLeekvkeL 38
                 +Lee + eL
  MMETSP0890-20130614|10307_1 60 KLEEAANEL 68
                 333333333 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.5e-05
                  HHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
   PF00170.16  27 eieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  ++ +Le + k+L++eN++Lk    ++++e+a+lk+++
  MMETSP0890-20130614|10307_1 271 RMTQLESELKSLKQENDRLK----SIEDEYASLKQQL 303
                  799*************8666....7777777777764 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   2.9e+03     165     177 ..      52      64 ..       4      77 .. 0.62
   2 ?   13.9   4.3     3e-05     0.046     106     198 ..     181     307 ..     110     318 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.9
    PF13476.1 165 eeledekellekl 177
                  +e+ d k++le+ 
  MMETSP0890-20130614|10307_1  52 KEKDDSKRKLEEA 64 
                  2222222222221 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3e-05
    PF13476.1 106 kkeilelleideleqflee.....llksdkeilpliaylgqerekekfklkekkk....................................rleelekeleeledekellekllqeeekekeleeleeeleell 198
                  + ++ +ll+++ l  +++e     +  ++++++ + a+  q++ ++ ++++++ +                                    r+ +le el+ l++e++ l++       e+e+  l+++l+++ 
  MMETSP0890-20130614|10307_1 181 QRKGAQLLRDEILAREVYErnilvQQHQQQQQFFVAAMAAQQQ-QAAQQQQQQIDtqtlneqnalppvgalqnalhpmhplngvdaqdwmsRMTQLESELKSLKQENDRLKSI------EDEYASLKQQLQNQS 307
                  4455555555556655555554333334444555555555555.4444443333366788888999999********************999999999999999999999975......445555555555433 PP

>> PF02706.10  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.6    0.0003      0.46      35     135 ..     192     295 ..     187     311 .. 0.77
   2 ?   -0.1   0.3      0.42   6.4e+02      62      89 ..     291     319 ..     271     347 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0003
   PF02706.10  35 flatpiYtadalvqveqkkgn...sgltaqallgdsdllankqpasaeieilkSrdvlekvidelnldi.....fpeigaglarlakelqkkltvekgkdtgiltvsvt 135
                  +la+++Y+ ++lvq++q++++   + + aq      +  a+ q+++  +++l+ +  l  v +  n  +     + + ++++++++ +l+++l+  k+++ ++++++ +
  MMETSP0890-20130614|10307_1 192 ILAREVYERNILVQQHQQQQQffvAAMAAQ-----QQQAAQQQQQQIDTQTLNEQNALPPVGALQNALHpmhplNGVDAQDWMSRMTQLESELKSLKQENDRLKSIEDE 295
                  689*****************9887545555.....24455556677899999999998777666665556767766667899999999999999999999998888766 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.42
   PF02706.10  62 allgd.sdllankqpasaeieilkSrdvl 89 
                  +++    +l+++ q +s+ i +l+ + + 
  MMETSP0890-20130614|10307_1 291 SIEDEyASLKQQLQNQSDLIATLQAQANF 319
                  44455556666666677777777666554 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.8   0.00071       1.1     356     434 ..     250     332 ..     192     341 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00071
    PF03961.8 356 k...lkklpklka.egqlesekkeqleklletkeklkeeleeleaelkelkeeleskkkea.kikvnkeiypgvkikigkkkri 434
                      l+ + +l+  + q  + +  qle+ l+++++ +++l+++e+e+++lk++l+++++ + +++++   + ++   +g+ ++ 
  MMETSP0890-20130614|10307_1 250 LqnaLHPMHPLNGvDAQDWMSRMTQLESELKSLKQENDRLKSIEDEYASLKQQLQNQSDLIaTLQAQA-NFLNTCAVVGQSNLS 332
                  24444444444444556667888999999999999999999999999999999999954443444444.444444555555555 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.19   2.9e+02      54      93 ..      35      72 ..      15      81 .. 0.58
   2 ?   -0.9   1.2       1.3     2e+03      75      89 ..     219     233 ..     191     253 .. 0.57
   3 ?   12.2   0.8   0.00011      0.17      64     104 .]     281     321 ..     260     321 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.19
    PF13600.1 54 svrrrdlqekdadaaseelaeleaelraledelarleaek 93
                 sv+ + ++   a+    el+e +++ r+le++ ++l+  +
  MMETSP0890-20130614|10307_1 35 SVSQALMS--MAPPPPVELKEKDDSKRKLEEAANELQMVQ 72
                 44333333..234445566777777777777666666444 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.3
    PF13600.1  75 leaelraledelarl 89 
                  + ++ +a++++ +++
  MMETSP0890-20130614|10307_1 219 AAQQQQAAQQQQQQI 233
                  222222333332222 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00011
    PF13600.1  64 dadaaseelaeleaelraledelarleaekealeariafls 104
                  + ++++++l+++e+e+ +l+++l++ ++ ++ l+a+ +fl+
  MMETSP0890-20130614|10307_1 281 SLKQENDRLKSIEDEYASLKQQLQNQSDLIATLQAQANFLN 321
                  35678889****************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2033  (0.148698); expected 273.4 (0.02)
Passed bias filter:                      605  (0.044251); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.93u 0.40s 00:00:01.33 Elapsed: 00:00:01.03
# Mc/sec: 953.89
//
Query:       MMETSP0890-20130614|10310_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-41  141.6   0.2    2.3e-41  141.3   0.2    1.1  1  PF00596.16 Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> PF00596.16  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.2   1.7e-45   2.3e-41       2     183 .]      50     230 ..      49     230 .. 0.90

  Alignments for each domain:
  == domain 1    score: 141.3 bits;  conditional E-value: 1.7e-45
                  HHHHHHHHHHHTTT-BTTB-EEEEE.TT..EEEEEEE-SS-GGG--CCCEEEEE.EHHHCCHHSTTS-SB-.TTHHHHHHHHHH.TTSSEEEE---CCCHCCCCSS.S...S.SCHHHCCHHH-.EEEEC------HHH...HHHHHHH----.SEEEETT---EE----HHHHHHHHHHHHHHHHHHH CS
   PF00596.16   2 elaeasrlladrglvegtgGniSvr.dd..deflitpsgvdfeeltaedlvvvdldsgevvegkekglkps.setplHaaiyrarpdvravvHtHspaavalsallkeglppltqeaaalylgdevpvvpyarpgteel...gealaealkgdakavllrnHGllvvGesveeAvaraeeleeaaeiql 183
                  +la+++r+l+d+g++eg+ ++++v  +   d+fl+ ++g+  +++ta++l+++d + g+v+eg +  + p   ++ +H+ i+ ++p++ +v+HtH p+a+als+l + ++++++q++a++y  de+++  +++ g ++    g++lae ++  ++++l +nHG++++G++v+eA++ +++le+aa iq+
  MMETSP0890-20130614|10310_1  50 DLAACYRILDDLGMNEGVDNHLTVMiPGtrDRFLCIAYGILWSQVTASNLLLLDGE-GNVLEG-D--GAPDpTAFYIHSRIHLKHPHATCVLHTHMPYATALSCLKDMQIEMIHQNSARFY--DEIAYDTEYT-GLVLGkeeGDRLAENMG-AKRVLLHQNHGVITAGDTVAEAFDEMYYLERAAMIQI 230
                  69**********************7432359***********************77.9***77.4..4466668*****************************998888999*******99..*****88888.644447778*******7.668******************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 1105.42
//
Query:       MMETSP0890-20130614|10315_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 243.50
//
Query:       MMETSP0890-20130614|10313_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.7   6.6       0.41   11.2   0.2    2.4  2  PF11942.3 Spt5 transcription elongation factor, acidic N-terminal
        3.7    7.2   5.3        5.2    6.7   0.4    2.1  2  PF06084.6 Cytomegalovirus TRL10 protein


Domain annotation for each model (and alignments):
>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.9    0.0074        51      11      35 ..      63      85 ..      53     118 .. 0.66
   2 ?   11.2   0.2   5.9e-05      0.41       3      30 ..     149     177 ..     148     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0074
    PF11942.3 11 eeeEeeeeedeeeelseeaefieea 35
                 ++++++++ d+  e+ e  ++i++a
  MMETSP0890-20130614|10313_1 63 DDDDDDDDPDFVHEIQE--NLIDQA 85
                 44444444455555543..455554 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 5.9e-05
    PF11942.3   3 dtEAevddeeeEee.eeedeeeelseeae 30 
                   +E  +d+eeeE+e +e + ++ l ++++
  MMETSP0890-20130614|10313_1 149 KEECGSDEEEEEDEgAETYLNSPLLNQEN 177
                  68999*********999999999988765 PP

>> PF06084.6  Cytomegalovirus TRL10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4   0.00077       5.2      96     147 ..      20      72 ..      13      74 .. 0.75
   2 ?    2.6   0.2     0.013        92     129     148 ..     143     162 ..     117     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00077
    PF06084.6  96 clayrsltrkkleqhaakkqniyeripyrpsrq.kdnsplieptgtddeeded 147
                   l+ r++    ++   + k+ +  r+  rp +    ++  i+ + +dd++d d
  MMETSP0890-20130614|10313_1  20 ALTTRDVNVEDVDTPISEKNVLKSRLRPRPPKAaLSDEQQIINDDDDDDDDPD 72 
                  678899999999999***********999999855666666665555555443 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.013
    PF06084.6 129 kdnsplieptgtddeededd 148
                  + ++p  e  g+d+ee+ed+
  MMETSP0890-20130614|10313_1 143 EGEQPFKEECGSDEEEEEDE 162
                  56789999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 981.58
//
Query:       MMETSP0890-20130614|10314_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.57
# Mc/sec: 619.75
//
Query:       MMETSP0890-20130614|10311_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   13.1   0.0      0.029   13.1   0.0    1.0  1  PF09609.5  CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
       0.03   13.5   0.0      0.033   13.4   0.0    1.1  1  PF12682.2  Flavodoxin
      0.081   12.3   0.0      0.098   12.0   0.0    1.2  1  PF14394.1  Domain of unknown function (DUF4423)
      0.088   11.1   0.0        0.1   10.9   0.0    1.0  1  PF00982.16 Glycosyltransferase family 20


Domain annotation for each model (and alignments):
>> PF09609.5  CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.3e-06     0.029     390     448 ..      43     111 ..      16     114 .] 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.3e-06
    PF09609.5 390 plsssrswasvTPvvL.dryp........dcapyarklqlvlesdvlkdllgmlidrves.llaksldk 448
                   +   r+w ++ P ++ d y+        d+ +y  +l+     + ++dl    +d++++ +lak ++ 
  MMETSP0890-20130614|10311_1  43 LPIEFRTWTTFDPSIIqDNYDflkknilrDAVHYGERLSSKRRMEIQRDLRDFYVDKIKEkMLAKEVVD 111
                  345679*******8764799*************************************986256666665 PP

>> PF12682.2  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.6e-06     0.033      57     126 ..      22      90 ..       9     111 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.6e-06
    PF12682.2  57 dnkarPalaekvenled.ydvvligfpiWWyeaPtivytfleeydfkgkivipfctsggsglsdaek.elqe 126
                  +++ar a ++ ve+++d  d + i f  W    P i++   ++ydf  k ++  + + g +ls+  + e+q+
  MMETSP0890-20130614|10311_1  22 EKTARAAHKQLVESVKDkSDNLPIEFRTWTTFDPSIIQ---DNYDFLKKNILRDAVHYGERLSSKRRmEIQR 90 
                  57788888888888876258899*************97...8********************9865424554 PP

>> PF14394.1  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.9e-05     0.098      96     141 ..      24      69 ..      15      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.9e-05
    PF14394.1  96 avrslhkqmlelAkealdrvpkeeRdvstlTmaiseeayekikkel 141
                    r  hkq+ e  k++ d++p e R  +t+  +i +++y+ +kk++
  MMETSP0890-20130614|10311_1  24 TARAAHKQLVESVKDKSDNLPIEFRTWTTFDPSIIQDNYDFLKKNI 69 
                  5799**************************************9987 PP

>> PF00982.16  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     3e-05       0.1      64     136 ..      36     110 ..      11     112 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3e-05
                  -EEEE...----EEEE----HHHHHHHTTTHHHHTHHHHHTT-GG.....G----HHHH---HHH..HHHHHHHHG CS
   PF00982.16  64 kekvskeleekfsvvpvllseekveeyyngfsnsvLWplfHYklp.dsseekefersawdaYvkv..nklFAdkiv 136
                   ++ s++l  +f   +   +  +++  y+   +++L++ +HY    +s+  +e +r   d Yv+    k+ A+++v
  MMETSP0890-20130614|10311_1  36 VKDKSDNLPIEFRTWT-TFDPSIIQDNYDFLKKNILRDAVHYGERlSSKRRMEIQRDLRDFYVDKikEKMLAKEVV 110
                  2233344444454333.34469999*****************99888999999****9999997422566676665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 496.70
//
Query:       MMETSP0890-20130614|10317_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.2   2.6        0.4   10.0   1.8    1.6  1  PF04939.7 Ribosome biogenesis regulatory protein (RRS1)


Domain annotation for each model (and alignments):
>> PF04939.7  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.8   2.9e-05       0.4      88     117 ..     139     168 ..     135     172 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.9e-05
    PF04939.7  88 kkKGikkrkksklvyDeetgewvprwGykr 117
                  k+K i+k+k+  + y +  + w++++Gy++
  MMETSP0890-20130614|10317_1 139 KRKAIAKEKEAEMKYKDLLDFWKDKYGYQK 168
                  79**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      537  (0.0392774); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.83
# Mc/sec: 606.31
//
Query:       MMETSP0890-20130614|10318_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-11   43.3   5.3      4e-11   43.3   3.7    3.2  3  PF04419.9  4F5 protein family
  ------ inclusion threshold ------
       0.28   10.2   4.7       0.35    9.9   3.3    1.3  1  PF05236.9  Transcription initiation factor TFIID component TAF4 family
       0.73    9.3   5.7       0.84    9.1   4.0    1.1  1  PF08374.6  Protocadherin
        1.3    7.0   6.6        1.4    6.9   4.6    1.0  1  PF05262.6  Borrelia P83/100 protein
        1.6    8.0   3.8        2.5    7.5   2.6    1.2  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF04419.9  4F5 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   3.7   1.5e-14     4e-11       1      36 [.       1      36 [.       1      37 [. 0.97
   2 ?   -1.5   7.8       1.4     4e+03      12      31 ..      45      65 ..      37      74 .. 0.63
   3 ?    0.4   0.8      0.38   1.1e+03      16      36 ..      69      92 ..      67      93 .] 0.54

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.5e-14
                 ----GGGTTTSTTT---SS...-------S----TT CS
    PF04419.9  1 MaRGnQReqaRERNaKKaakkkgkgaksqlkaaaka 36
                 M+RGnQRe++R+R+a +aa++++k+++++l+++++ 
  MMETSP0890-20130614|10318_1  1 MTRGNQREIDRQRAANRAARAGVKKKDDGLTPQQRN 36
                 **********************************97 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.4
                 TTT---SS....-------S- CS
    PF04419.9 12 ERNaKKaakkk.gkgaksqlk 31
                 E++aKKaak+    ++ s+ k
  MMETSP0890-20130614|10318_1 45 EKKAKKAAKATePTSGGSGPK 65
                 677777776666334445544 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.38
                 --SS......-------S----TT CS
    PF04419.9 16 KKaakkk...gkgaksqlkaaaka 36
                 KK++kk    ++  +++lk  ak+
  MMETSP0890-20130614|10318_1 69 KKNDKKSedlSSLLSEGLKSGAKS 92
                 666665566633334566665554 PP

>> PF05236.9  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.3   0.00013      0.35     166     220 ..       6      56 ..       2      87 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00013
    PF05236.9 166 eeeeirhRaANatAlaaigprkKyklmaesarssaggqgpsslekkskkklsskl 220
                  + e  r+RaAN +A+a  g +kK    + ++r++++   ++ +ekk+kk+ +++ 
  MMETSP0890-20130614|10318_1   6 QREIDRQRAANRAARA--GVKKKDDGLTPQQRNERD--AKAMAEKKAKKAAKATE 56 
                  56788*******9986..778888888887776655..44444444444444432 PP

>> PF08374.6  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.0   0.00031      0.84      64     131 ..      11      79 ..       6      91 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00031
    PF08374.6  64 rqaerkkgyqagkkeeedfvsPkqed.kqkkkkkkkkkksdkslllnivtveelkeddeeseqkeekls 131
                  rq+ ++++++ag k+++d ++P+q + +++k   +kk k   +         + k+  +++++k+e+ls
  MMETSP0890-20130614|10318_1  11 RQRAANRAARAGVKKKDDGLTPQQRNeRDAKAMAEKKAKKAAKATEPTSGGSGPKPAPKKNDKKSEDLS 79 
                  678889999999999*******99762557776666644333334444445555666666666666666 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.6   0.00052       1.4     279     337 ..       5      62 ..       2      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00052
    PF05262.6 279 kkreiekaqkeikkkdeeakkakdakaedlkkeskaeekeaedkeleakkereevaeDl 337
                  ++rei++ q+ +++++    k kd+     +++ ++ + +ae+k + a k  e+ ++  
  MMETSP0890-20130614|10318_1   5 NQREIDR-QRAANRAARAGVKKKDDGLTPQQRNERDAKAMAEKKAKKAAKATEPTSGGS 62 
                  5799999.999999999999999998888889999999999****99999999998743 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.6   0.00091       2.5      18      64 ..       5      51 ..       2      57 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00091
   PF04977.10 18 alyqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieeqARse 64
                 + ++++++ aa+ a  a +k++ + L  + ++ ++ +++ e+ A++ 
  MMETSP0890-20130614|10318_1  5 NQREIDRQRAANRAARAGVKKKDDGLTPQQRNERDAKAMAEKKAKKA 51
                 568999**************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 309.53
//
Query:       MMETSP0890-20130614|10320_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.9   0.2       0.17   11.3   0.1    1.3  1  PF12515.3 Ca2+-ATPase N terminal autoinhibitory domain


Domain annotation for each model (and alignments):
>> PF12515.3  Ca2+-ATPase N terminal autoinhibitory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.2e-05      0.17       3      19 ..      28      45 ..      26      46 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
    PF12515.3  3 ddlFdvea.KnsseErlr 19
                 d++Fd+ea K+ +eE+l+
  MMETSP0890-20130614|10320_1 28 DENFDIEAdKKKAEESLK 45
                 89*******99*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 253.73
//
Query:       MMETSP0890-20130614|10319_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 264.21
//
Query:       MMETSP0890-20130614|10323_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 248.85
//
Query:       MMETSP0890-20130614|10325_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 247.01
//
Query:       MMETSP0890-20130614|10327_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   54.5   0.1    1.5e-14   54.1   0.1    1.1  1  PF10183.4 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
  ------ inclusion threshold ------
      0.038   13.5   0.0      0.063   12.8   0.0    1.3  1  PF09720.5 Putative addiction module component
       0.09   12.5   0.0       0.12   12.2   0.0    1.1  1  PF04678.8 Protein of unknown function, DUF607


Domain annotation for each model (and alignments):
>> PF10183.4  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1   3.2e-18   1.5e-14      40     101 ..      11      82 ..       3      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 3.2e-18
    PF10183.4  40 gllfgkkpispG..........ekrdwegwelafflgftlllvvltvglaykPDtsiqeWArrEAlrrikrr 101
                  g+ fgk++ + G             +wegwe + +++   ++++l++gl++ P+tsiq+WAr+EAl r+kr 
  MMETSP0890-20130614|10327_1  11 GKGFGKRWGTDGrkeatlfnetTETKWEGWEPIVYTTYAASMILLVFGLTNRPNTSIQDWAREEALVRLKRY 82 
                  5568888877778888888888789*******************************************9886 PP

>> PF09720.5  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.063      21      45 ..      63      87 ..      57      88 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
    PF09720.5 21 edeeleeawkeElerRlaayeaGke 45
                 ++  ++++ +eE+  Rl++y+aG+e
  MMETSP0890-20130614|10327_1 63 PNTSIQDWAREEALVRLKRYDAGQE 87
                 34589******************86 PP

>> PF04678.8  Protein of unknown function, DUF607
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.6e-05      0.12     116     164 ..      34      81 ..      32      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.6e-05
    PF04678.8 116 elsWDvmEPVtYfvtlatalagyaYflltkrevsYealddrllskkqkk 164
                  e  W+  EP+ Y +t+a++++  ++ l ++ + s +++ ++ +  ++k+
  MMETSP0890-20130614|10327_1  34 ETKWEGWEPIVY-TTYAASMILLVFGLTNRPNTSIQDWAREEALVRLKR 81 
                  5679999****8.79************************9999999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.84
# Mc/sec: 333.78
//
Query:       MMETSP0890-20130614|10324_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-15   56.0   0.0    4.8e-15   55.6   0.0    1.3  1  PF01369.15 Sec7 domain


Domain annotation for each model (and alignments):
>> PF01369.15  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   3.5e-19   4.8e-15      82     190 .]     152     278 ..     102     278 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 3.5e-19
                  ---S----HHHHHTS-B-..--HHHHHHHHHHH---HHH.H-T..................TT.SSSHHHHHHHHHHHHHHHHHHH-TTS-GG------TTTT----------HHHH.HHHHHHHHHS-- CS
   PF01369.15  82 glsllealRtflssfrlp..gEaqqierileaFskrYfe.qnpr.................tavfkssdaifilaysiimLntDlHnpqvknkmtledFiknnrgindgknlprefL.ediYesIkaeei 190
                    ++++alR +l+ f +     +   +r++++ sk Y+    +r                 +  +  + + +i+ y+iimLntDlHnp v++k+t e F++ +        +++e + + +Y sIk++++
  MMETSP0890-20130614|10324_1 152 ATDVEDALRRVLEIFPFLpaLSSHGADRVIDQLSKVYATvRAERtyvkdfesfspleslfiDQNIDIAATSYIIWYAIIMLNTDLHNPRVQSKITEEGFVRSLAA---AAAIDAEQIaRTLYRSIKQRPL 278
                  567899******99976545678889************74443467777777777777777555889999*********************************94...5666666551679*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:00.78
# Mc/sec: 980.05
//
Query:       MMETSP0890-20130614|10326_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-77  259.5   0.0    1.4e-77  259.4   0.0    1.0  1  PF00574.18 Clp protease
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.062   12.8   0.0    1.3  1  PF09201.5  SRX


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.4   0.0     2e-81   1.4e-77       6     181 ..      35     210 ..      30     211 .. 0.98

  Alignments for each domain:
  == domain 1    score: 259.4 bits;  conditional E-value: 2e-81
   PF00574.18   6 avdiysrllkeriiflgeevddevankivaqLlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevles 181
                   +d++srllk+ri+ lg++v+devan +vaqLl+L +ed++kdi+ly+nSpGGsv+ag+aIyd+++f+++dv t+c+G aaSm++++l aG+ gkR alpnarimihqPlggaqgqa diei+a+e++ ++++ln++++e tgq+++k+e+d drd+f+++eeA++yGliD+v+++
  MMETSP0890-20130614|10326_1  35 QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPTKDITLYVNSPGGSVSAGMAIYDAMQFVPCDVATVCFGTAASMGAFLLGAGARGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPISKVEEDCDRDFFMTPEEALDYGLIDSVIQT 210
                  589**************************************************************************************************************************************************************************986 PP

>> PF09201.5  SRX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.1e-06     0.062      25      57 ..     163     195 ..     149     215 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.1e-06
                  --HHHHHHHHHHHHHS---GGG----EEEEE-- CS
    PF09201.5  25 fseaqvnkfiselissPvsrkeddvksklltis 57 
                  f  +q+n+fise+  +P+s+ e+d++ ++ + +
  MMETSP0890-20130614|10326_1 163 FVRQQLNTFISEYTGQPISKVEEDCDRDFFMTP 195
                  8899********************999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 748.86
//
Query:       MMETSP0890-20130614|10334_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-13   48.3   0.1    4.9e-10   38.8   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    2.6e-12   46.3   0.0    2.8e-12   46.2   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    0.00017   20.9   0.1     0.0003   20.2   0.0    1.4  1  PF13176.1  Tetratricopeptide repeat
    0.00029   20.1   0.3    0.00065   19.0   0.1    1.7  2  PF00515.23 Tetratricopeptide repeat
    0.00042   19.7   0.1    0.00061   19.2   0.1    1.3  1  PF13414.1  TPR repeat
    0.00043   19.8   0.1    0.00064   19.3   0.1    1.4  1  PF07719.12 Tetratricopeptide repeat
    0.00071   19.4   0.2     0.0014   18.5   0.2    1.6  1  PF13431.1  Tetratricopeptide repeat
     0.0034   16.9   0.1     0.0055   16.2   0.1    1.3  1  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.029   14.8   0.0      0.037   14.5   0.0    1.2  1  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0016       2.4      28      42 .]       2      16 ..       1      16 [. 0.87
   2 !   38.8   0.1   3.2e-13   4.9e-10       1      39 [.      17      55 ..      17      55 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0016
    PF13374.1 28 alairrrllGddHPd 42
                 a +i ++ +G++HP+
  MMETSP0890-20130614|10334_1  2 AIEIDEKTYGPNHPN 16
                 56899*********5 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 3.2e-13
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGdd 39
                 +a+ lnnLA +l ++g+++eA  l e+al ir++ lG++
  MMETSP0890-20130614|10334_1 17 VATDLNNLAELLKNQGKFDEAKSLSERALRIREEKLGPN 55
                 67779********************************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.9e-15   2.8e-12      31      78 .]       2      50 ..       1      50 [. 0.96

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.9e-15
    PF13424.1 31 alel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                 a+e+  +++g++hp++a+ lnnla+l+  +g++deA+ + e+Al+i+e+
  MMETSP0890-20130614|10334_1  2 AIEIdEKTYGPNHPNVATDLNNLAELLKNQGKFDEAKSLSERALRIREE 50
                 7899999***************************************985 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     2e-07    0.0003       2      34 ..      21      53 ..      21      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2e-07
    PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                 l+nLa+l  ++g++++A +l eraL+++++ l+
  MMETSP0890-20130614|10334_1 21 LNNLAELLKNQGKFDEAKSLSERALRIREEKLG 53
                 89*********************9999988776 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   2.3e+03      27      32 ..       2       7 ..       2       8 .. 0.82
   2 !   19.0   0.1   4.3e-07   0.00065       4      32 ..      21      49 ..      18      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.5
                 HHHHHT CS
   PF00515.23 27 ALelnP 32
                 A+e+++
  MMETSP0890-20130614|10334_1  2 AIEIDE 7 
                 899997 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 4.3e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekALelnP 32
                 l+nl+ ++ ++gk+deA    e+AL++++
  MMETSP0890-20130614|10334_1 21 LNNLAELLKNQGKFDEAKSLSERALRIRE 49
                 79***************999999999876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1     4e-07   0.00061      29      68 ..       2      48 ..       1      49 [. 0.75

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4e-07
    PF13414.1 29 Aleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                 A+e+d     pn+++    ++nlA ++ ++g +++eA    e+Al+++
  MMETSP0890-20130614|10334_1  2 AIEIDektygPNHPNvatDLNNLAELLKNQG-KFDEAKSLSERALRIR 48
                 6677666666666665547899999999999.5999999999999875 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   4.2e-07   0.00064       3      31 ..      20      48 ..      18      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.2e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAleld 31
                  l+nl++++ ++g+++eA+ + e+Al++ 
  MMETSP0890-20130614|10334_1 20 DLNNLAELLKNQGKFDEAKSLSERALRIR 48
                 589***********************986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     9e-07    0.0014       9      33 ..      14      38 ..       2      39 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 9e-07
    PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                 +Pn a  +nnLAell+n+G+++eA+
  MMETSP0890-20130614|10334_1 14 HPNVATDLNNLAELLKNQGKFDEAK 38
                 566677789**************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.6e-06    0.0055       4      31 ..      21      48 ..      17      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.6e-06
                 TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekalelk 31
                 ++nl++++++ G++d+Ak+  e+al + 
  MMETSP0890-20130614|10334_1 21 LNNLAELLKNQGKFDEAKSLSERALRIR 48
                 78******************99999885 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.4e-05     0.037       5      30 ..      22      47 ..      17      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-05
    PF13428.1  5 lalarallalGdpdeAiallrralal 30
                   la++l ++G +deA  l +ral+ 
  MMETSP0890-20130614|10334_1 22 NNLAELLKNQGKFDEAKSLSERALRI 47
                 579********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 169.87
//
Query:       MMETSP0890-20130614|10333_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   13.1   0.1       0.12   11.9   0.1    1.5  1  PF09968.4 Uncharacterized protein domain (DUF2202)


Domain annotation for each model (and alignments):
>> PF09968.4  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.7e-06      0.12      68     113 ..     177     222 ..     173     235 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.7e-06
    PF09968.4  68 nqelqelYneLvekgsksledaLkvgaliEdldiaDleeaiketdn 113
                  +++++++  ++v+k ++ ++d L +g   E++di Dl ++ k+ d 
  MMETSP0890-20130614|10333_1 177 TEDINQIKTDVVKKKEQPVQDKLLIGEDYENVDILDLTQLPKRLDT 222
                  678999999****************************998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.64
# Mc/sec: 1407.86
//
Query:       MMETSP0890-20130614|10335_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-52  177.1   0.0    2.1e-52  176.7   0.0    1.2  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    2.2e-27   95.0   0.0    2.6e-27   94.7   0.0    1.1  1  PF00389.25 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
    2.9e-07   30.4   0.2    4.7e-07   29.7   0.1    1.3  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
  ------ inclusion threshold ------
      0.039   13.4   0.0      0.069   12.6   0.0    1.5  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7   0.0   6.1e-56   2.1e-52       2     178 .]     115     291 ..     114     291 .. 0.93

  Alignments for each domain:
  == domain 1    score: 176.7 bits;  conditional E-value: 6.1e-56
                  HHHHHHHTTCCCHHHCCCTT--.--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH---EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCCS-TT-EEEE---GGGB-HHHHHHHHHH-TT-EEEES--TTH--GHH....HHHHCSTTEEE--S-T CS
   PF02826.14   2 alllallrklkeadeevregewssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelgaevvsleellaesDvvslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeEplped....spllelpnviltPHia 178
                  a +++l+r+++e   ++++g+w  + a  + e+++k++Gi+G+G+IG+++  +++a+gm+v++yd  +k ++    +  +++sle+ll+ + v++lh+p +++t+++++ae++a+m++g+i+iN aRG+lvd +aL ++Lksg++agaa+Dvf +Ep ++     spl+++pnv+ltPHi+
  MMETSP0890-20130614|10335_1 115 ASIIMLIRRIPEKMFAIHNGDW-LKTADGAFEVRKKNLGIVGYGNIGTQLSVIASALGMHVFYYDIAPKLAH---GNARRMDSLEDLLKMCHVITLHVPSNEQTKNMMTAERFAMMQPGSIFINQARGDLVDIQALTTVLKSGHLAGAAIDVFPQEPKSKTdtfySPLIDCPNVLLTPHIG 291
                  7899******************.88888899************************************88444...3334899***************************************************************************99884555599***********98 PP

>> PF00389.25  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   7.7e-31   2.6e-27       1     129 [.      10     319 ..      10     323 .. 0.96

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 7.7e-31
                  EEECST.-CCHHHHHCCTE.EEEEEC...GSSHHHHHC....-SEEEE-TTS-BSHHHHCC-TT--EEEES----TTB-HHHHHH---EEE--TTTTHHHHHHHH..................................................................................................................................................................................T-CHHHHHHHHHHHHHHHHHHH--G--T CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00389.25   1 vlileplreeelellkegv.evevkd...ellteellekakdadalivrsntkvtaevleklpkLkviatagvGvDniDldaakerGIlVtnvpgystesvAEla..................................................................................................................................................................................fateeaqenmaeeaaenlvaflkgespa 129
                  vl++e ++ e+ + lk  +  + +++   ++++  l +++k+a+ l +rs+t+v+++++e++p+L +++++++G++++Dl  a++rGI V+n+p  +t+svAEl+                                                                                                                                                                                  ++t eaq ++++ +  +l ++l ++ ++
  MMETSP0890-20130614|10335_1  10 VLLVEGVHAEADDVLKS-IgPIRIERkcgSPDRVWLEKEIKNAKLLGIRSRTQVDEKLFENAPNLIAVGCYCIGTNQVDLMCAQRRGIPVFNAPFGNTRSVAELTiasiimlirripekmfaihngdwlktadgafevrkknlgivgygnigtqlsviasalgmhvfyydiapklahgnarrmdsledllkmchvitlhvpsneqtknmmtaerfammqpgsifinqargdlvdiqalttvlksghlagaaidvfpqepksktdtfysplidcpnvlltphigGSTAEAQAAIGHDCSIKLAKYLYQGATT 319
                  68888889999999999.44666666668888889***********************************************************************************************************************************************************************************************************************************************************************9999999776665 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   1.4e-10   4.7e-07       2     108 ..     149     251 ..     148     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.4e-10
                  BEBEEB-------HHHHHHHH---EEEE--SSHHHHHHHHHTTEEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHHH CS
   PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtkekveelvaegakaaesieelvasldvvilmvkagkavdeviegellealekgdilidgstsspedtrelakelk 108
                  k++g++G G++G+++     + g++v  y+       +l+  +a+ ++s+e+l++ + v+ l v+++++++++++ e ++ +++g+i+i     +  d ++l++ lk
  MMETSP0890-20130614|10335_1 149 KNLGIVGYGNIGTQLSVIASALGMHVFYYDIA----PKLAHGNARRMDSLEDLLKMCHVITLHVPSNEQTKNMMTAERFAMMQPGSIFINQARGDLVDIQALTTVLK 251
                  799***************************87....578888899*******************************9999*********998888777777766655 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     2e-05     0.069       2      51 ..     151     199 ..     150     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2e-05
                  EEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH CS
   PF02737.13   2 vaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklve 51 
                   ++vG G +G+++  ++ + g++V  +di+++ ++   +r+++ le l +
  MMETSP0890-20130614|10335_1 151 LGIVGYGNIGTQLSVIASALGMHVFYYDIAPKLAHGNARRMDS-LEDLLK 199
                  68***************************99988777766655.665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1334.19
//
Query:       MMETSP0890-20130614|10337_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   53.6  10.1    9.4e-09   34.6   0.3    2.6  2  PF13414.1  TPR repeat
    1.1e-08   34.2   6.4     0.0052   16.2   0.1    3.6  3  PF00515.23 Tetratricopeptide repeat
    7.4e-07   28.4   8.5      0.041   13.6   0.1    3.7  3  PF07719.12 Tetratricopeptide repeat
    7.5e-06   25.6   0.6      0.008   16.1   0.1    2.9  2  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.7   0.8      0.068   12.9   0.2    2.3  2  PF13371.1  Tetratricopeptide repeat
      0.029   14.9   1.7      0.029   14.9   1.1    3.5  4  PF13432.1  Tetratricopeptide repeat
       0.05   13.2   0.2        3.8    7.4   0.0    2.9  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   2.6   7.8e-11   1.5e-07       5      69 .]     266     329 ..     262     329 .. 0.95
   2 !   34.6   0.3   4.8e-12   9.4e-09       5      68 ..     300     362 ..     297     362 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 7.8e-11
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +lk+++ ++  +++ ++A+++y++A++l   + +l++ ++ ++l l+ ++++A  d++kAle +P
  MMETSP0890-20130614|10337_1 266 ELKAQADEAALAQENEKALDLYSQAIALGAPSSQLLCKRGEIFLALN-RPKAASLDATKALEANP 329
                  799*************************999***************8.7*************998 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 4.8e-12
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                   l  +G+ ++ +++++ A    +kAle +p++ ++y  +A+a +klg +ye A +d+ +A ++d
  MMETSP0890-20130614|10337_1 300 LLCKRGEIFLALNRPKAASLDATKALEANPDSVKAYKLRAKARRKLG-EYELASTDFGQAQRID 362
                  56789******************************************.6***********9887 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.8      0.01        20      16      30 ..     279     293 ..     271     293 .. 0.87
   2 !   14.3   0.0   1.1e-05     0.021       3      33 ..     300     330 ..     298     331 .. 0.94
   3 !   16.2   0.1   2.6e-06    0.0052       1      31 [.     332     362 ..     332     365 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.01
                  -HHHHHHHHHHHHHH CS
   PF00515.23  16 kydeAleyyekALel 30 
                  + ++Al+ y++A+ l
  MMETSP0890-20130614|10337_1 279 ENEKALDLYSQAIAL 293
                  679**********87 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPn 33 
                   l+ +G ++l l++++ A  +  kALe nP+
  MMETSP0890-20130614|10337_1 300 LLCKRGEIFLALNRPKAASLDATKALEANPD 330
                  6899**************************8 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 2.6e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALeln 31 
                  +ka++ ++ a +klg+y+ A  ++ +A +++
  MMETSP0890-20130614|10337_1 332 VKAYKLRAKARRKLGEYELASTDFGQAQRID 362
                  58*************************9998 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.2     0.012        24       6      30 ..     269     293 ..     265     294 .. 0.85
   2 !   12.2   0.0   6.1e-05      0.12       3      33 ..     300     330 ..     298     331 .. 0.94
   3 !   13.6   0.1   2.1e-05     0.041       2      32 ..     333     363 ..     332     365 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.012
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAlel 30 
                  ++++ ++ +++ e+Al+++ +A++l
  MMETSP0890-20130614|10337_1 269 AQADEAALAQENEKALDLYSQAIAL 293
                  567778888999***********97 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6.1e-05
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  +l+ +G++ ++l++++ A  +  kAle +P+
  MMETSP0890-20130614|10337_1 300 LLCKRGEIFLALNRPKAASLDATKALEANPD 330
                  7899**************************8 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 2.1e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  +a+ ++++a +klg+ye A  +f +A ++d 
  MMETSP0890-20130614|10337_1 333 KAYKLRAKARRKLGEYELASTDFGQAQRIDF 363
                  7999**********************99986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0047       9.2       1      32 [.     286     317 ..     286     318 .. 0.94
   2 !   16.1   0.1   4.1e-06     0.008       3      32 ..     322     351 ..     321     352 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0047
    PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeA 32 
                  ly +a++l   ++++++ ++e++l++++++ A
  MMETSP0890-20130614|10337_1 286 LYSQAIALGAPSSQLLCKRGEIFLALNRPKAA 317
                  799************************99877 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 4.1e-06
    PF13431.1   3 ekaleldPnnadaynnLAelllnnGdleeA 32 
                   kale +P+++ ay  +A++  ++G++e A
  MMETSP0890-20130614|10337_1 322 TKALEANPDSVKAYKLRAKARRKLGEYELA 351
                  69*************************977 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.5e-05     0.068       8      70 ..     277     339 ..     273     342 .. 0.94
   2 ?    5.4   0.0    0.0077        15      22      56 ..     325     359 ..     322     395 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.5e-05
    PF13371.1   8 eedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelira 70 
                  ++++e+AL  +   ++l   + +++  rG +   l+++ aA  d + +le  pd   a+++ra
  MMETSP0890-20130614|10337_1 277 AQENEKALDLYSQAIALGAPSSQLLCKRGEIFLALNRPKAASLDATKALEANPDSVKAYKLRA 339
                  57899************999****************************************998 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0077
    PF13371.1  22 lllaPddpyerRDrGlllaqlgclaaAaedLeafl 56 
                  l+ +Pd++  +  r+ ++ +lg+++ A +d+ ++ 
  MMETSP0890-20130614|10337_1 325 LEANPDSVKAYKLRAKARRKLGEYELASTDFGQAQ 359
                  5668*************************997765 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.9       4.2   8.2e+03      30      58 ..     112     123 ..      99     131 .. 0.47
   2 ?    8.2   2.6    0.0018       3.5       2      50 ..     269     317 ..     268     317 .. 0.96
   3 ?   14.9   1.1   1.5e-05     0.029       3      50 ..     304     351 ..     302     364 .. 0.94
   4 ?   -2.9   0.1       5.6   1.1e+04      32      49 ..     377     394 ..     370     400 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 4.2
    PF13432.1  30 aaeallllaeallrlgrldeAaallraal 58 
                  a                 +eAaal ++a+
  MMETSP0890-20130614|10337_1 112 A-----------------KEAAALEAEAA 123
                  3.................33334444443 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0018
    PF13432.1   2 alArallraGdydeAlaaleaalala.PeaaeallllaeallrlgrldeA 50 
                  a+A+++  a++ ++Al+++++a+al  P   + l  ++e++l+l+r+++A
  MMETSP0890-20130614|10337_1 269 AQADEAALAQENEKALDLYSQAIALGaP-SSQLLCKRGEIFLALNRPKAA 317
                  79999*********************99.9*****************998 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 1.5e-05
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeA 50 
                  +++ +l+++++++A     +al+++P+ + a+ l+a a  +lg+++ A
  MMETSP0890-20130614|10337_1 304 RGEIFLALNRPKAASLDATKALEANPDSVKAYKLRAKARRKLGEYELA 351
                  78999****************************************987 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 5.6
    PF13432.1  32 eallllaeallrlgrlde 49 
                  +a+  +a al++  +l+e
  MMETSP0890-20130614|10337_1 377 RAKKIRAIALAEEQQLAE 394
                  566666666666666665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.07   1.4e+02       2      33 ..     299     330 ..     298     331 .. 0.88
   2 ?    7.4   0.0    0.0019       3.8       2      31 ..     333     362 ..     332     365 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.07
                  --TTT---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkpr 33 
                  ++++ +G+i++ l++ ++A     kale +p+
  MMETSP0890-20130614|10337_1 299 QLLCKRGEIFLALNRPKAASLDATKALEANPD 330
                  578899************99999999999985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0019
                  --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                  kay +++++ r+lG+y++A   + +a  ++
  MMETSP0890-20130614|10337_1 333 KAYKLRAKARRKLGEYELASTDFGQAQRID 362
                  689999***************999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       813  (0.0594646); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 1212.79
//
Query:       MMETSP0890-20130614|10341_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   25.2   0.2    2.2e-05   24.2   0.1    1.6  1  PF13839.1 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    0.00033   19.7  15.4     0.0065   15.6  10.7    2.2  1  PF04886.7 PT repeat
     0.0024   17.8   0.0     0.0043   17.0   0.0    1.4  1  PF13472.1 GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   4.9e-09   2.2e-05      13     133 ..       8     158 ..       3     216 .. 0.65

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 4.9e-09
    PF13839.1  13 lrgkrlvFvGDSlnRnqyeslvcllskvekawe...................skkksdeeeng............refvfk.fksynvtlefywdpyLvedsidkeigklwkesqagadvlvfnsglWwlkrkikr...........l.relssgeayrkaletw 133
                  l +k++vF+GDS++R   + +   l + e  +e                   +                      +++ +k f + n++ +fy  +  + d ++ +  ++      + d++vfn+glW l ++              +   +  ++ +++++ +w
  MMETSP0890-20130614|10341_1   8 LXNKKIVFLGDSITRFCTFGFNVWLETGELPDEeyknkwgnsnkdfdccesqK---------WtddapissngahKQWFWKeFDDINARTDFYFIQGAWYDAME-DLENELS----DYDIIVFNAGLWVLLDECGTdwtddcaddfqNeLGMAADKLFKNKIAIW 158
                  45*************77777777776655433335555566544444444441.........033333333444444444226666666655554444436655.5555555....8************954433355555555554334444444444444444 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  10.7   1.4e-06    0.0065       2      35 ..     258     291 ..     253     300 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.4e-06
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                  pT+ Pt qPT +PT    ++PT  Pt +P++ Pt
  MMETSP0890-20130614|10341_1 258 PTSSPTYQPTYGPTKKTISNPTKMPTREPSQIPT 291
                  7777777777777777778888888888888776 PP

>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.5e-07    0.0043       1     173 [.      14     219 ..      14     220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.5e-07
    PF13472.1   1 valGDSitaGygap.........................................sgegyadrlaaq.lgagvevvnlgcsGattrdglarleadvlallaadpdlvtltlGgNDlgf..g.drtdaslekyeanlaaildalreaapvllvgyppvl.padreppaaglrdaldalnealaea.AaaygvtyvdlaaafadhegwdkdllapdglHPna 173
                  v+lGDSit  +                                            s+++  ++++++ ++ +++ + + + Ga  + +   le++       d+d++++++G   l +  g d td+ ++ ++++l    d+l ++   ++ +++ ++ ++d+ +        ++ ln++ +++ A++++v  v++++++  ++    d+ ++dg+H + 
  MMETSP0890-20130614|10341_1  14 VFLGDSITRFCTFGfnvwletgelpdeeyknkwgnsnkdfdccesqkwtddapisSNGAHKQWFWKEfDDINARTDFYFIQGAWYDAME-DLENE-----LSDYDIIVFNAGLWVLLDecGtDWTDDCADDFQNELGMAADKLFKNKIAIWRSTTCCGvEEDGSW-----IPSIESLNDEAKDVlADENNVGIVNAYELWGYND-L--DEDTTDGTHATV 219
                  799*****877655557799999999999999999999999999999999988876788888889989889999999999998777665.68887.....59****************9977889999***************9888555555554442555555.....789**********636788**********97443.3..44579****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.85
# Mc/sec: 851.41
//
Query:       MMETSP0890-20130614|10345_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-22   77.2   1.4    1.7e-08   33.9   0.0    3.3  3  PF00400.27 WD domain, G-beta repeat
     0.0008   18.9   0.4        6.4    6.4   0.0    3.6  3  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.014   14.6   2.3         15    4.9   0.0    3.3  3  PF10584.4  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.4     8e-09   3.7e-05      19      39 .]       2      22 ..       1      22 [. 0.97
   2 !   33.9   0.0   3.6e-12   1.7e-08       4      39 .]     112     146 ..     109     146 .. 0.95
   3 !   17.4   0.0   5.8e-07    0.0026       2      26 ..     152     176 .]     151     176 .] 0.90

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8e-09
                 EESSSTEEEEEETTSEEEEEE CS
   PF00400.27 19 fspdgpllasgSrDgtirlWd 39
                 fspdg++lasgS D t+ +Wd
  MMETSP0890-20130614|10345_1  2 FSPDGSILASGSTDATVIIWD 22
                 9*******************9 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 3.6e-12
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++tlr H ++V+ +afspdg+llasgS+ +t+ +Wd
  MMETSP0890-20130614|10345_1 112 IRTLRYHPGGVRLLAFSPDGSLLASGSS-KTVMIWD 146
                  78999***********************.******9 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 5.8e-07
                  EEEEEEESSSSSEEEEEEESSSTEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpll 26 
                  + ++tl+ H+++++++afspdg++l
  MMETSP0890-20130614|10345_1 152 NRIRTLSDHSNSIEALAFSPDGSIL 176
                  6689*****************9876 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.015        68      16      24 ..       2      10 ..       1      10 [. 0.85
   2 !    5.3   0.0    0.0031        14      15      24 ..     126     135 ..     125     135 .. 0.89
   3 !    6.4   0.0    0.0014       6.4       6      21 ..     159     174 ..     154     176 .] 0.77

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.015
                 E-----EEE CS
    PF07676.7 16 wSPDGkkiv 24
                 +SPDG+ ++
  MMETSP0890-20130614|10345_1  2 FSPDGSILA 10
                 9****9875 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0031
                  EE-----EEE CS
    PF07676.7  15 awSPDGkkiv 24 
                  a+SPDG+ ++
  MMETSP0890-20130614|10345_1 126 AFSPDGSLLA 135
                  8*****9886 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0014
                  SSSS-EEEEEE----- CS
    PF07676.7   6 nssgkngePawSPDGk 21 
                   +s   ++ a+SPDG+
  MMETSP0890-20130614|10345_1 159 DHSNSIEALAFSPDGS 174
                  567778888******7 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0056        26       8      14 ..       2       8 ..       1       9 [. 0.85
   2 ?    4.9   0.0    0.0032        15       8      14 ..     127     133 ..     126     134 .. 0.88
   3 ?    4.0   0.0     0.006        28       8      14 ..     169     175 ..     168     176 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0056
                 ------- CS
    PF10584.4  8 FSPdGRL 14
                 FSPdG +
  MMETSP0890-20130614|10345_1  2 FSPDGSI 8 
                 *****76 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0032
                  ------- CS
    PF10584.4   8 FSPdGRL 14 
                  FSPdG L
  MMETSP0890-20130614|10345_1 127 FSPDGSL 133
                  *****88 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.006
                  ------- CS
    PF10584.4   8 FSPdGRL 14 
                  FSPdG +
  MMETSP0890-20130614|10345_1 169 FSPDGSI 175
                  *****76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 577.75
//
Query:       MMETSP0890-20130614|10349_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   16.8   1.1     0.0051   16.6   0.8    1.0  1  PF11083.3 Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> PF11083.3  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.8   3.7e-07    0.0051      36      85 ..       6      55 ..       1      56 [. 0.89

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.7e-07
    PF11083.3 36 rklakydfsklNltesitleqvekeikklqeelekeldeYEklvrrLekf 85
                  +l  y   +l + + + + ++   i+k q  ++ ++ +YEkl   + ++
  MMETSP0890-20130614|10349_1  6 IQLNEYKRIRLEIEDDVDIGKILARIEKNQATIDFNRRNYEKLLLNISEY 55
                 4788899999********************************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 227.65
//
Query:       MMETSP0890-20130614|10348_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-22   78.5   6.0    2.5e-22   78.5   4.1    1.9  2  PF00542.14 Ribosomal protein L7/L12 C-terminal domain
  ------ inclusion threshold ------
      0.027   14.7   6.2      0.055   13.7   1.0    2.2  2  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00542.14  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.18   1.3e+03      27      51 ..      53      79 ..      46      86 .. 0.67
   2 !   78.5   4.1   3.7e-26   2.5e-22       2      68 .]      90     157 .]      89     157 .] 0.98

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.18
   PF00542.14 27 gLkeAKdlVesapkevkeg...vskeeA 51
                 gLk++ dl  +ap++v +    vs eeA
  MMETSP0890-20130614|10348_1 53 GLKDS-DLMGAAPVAVAAPvgaVSTEEA 79
                 77775.7888888888775222555555 PP

  == domain 2    score: 78.5 bits;  conditional E-value: 3.7e-26
   PF00542.14   2 fdVvLksa.gekKiavIKavReitglgLkeAKdlVesapkevkegvskeeAeeikkkLeeaGAkvelk 68 
                  fd+ L+++ ++ Ki++IK++R +tglgLkeAK++Ve++p++  ++++keeA+ei kk++e G+k+el+
  MMETSP0890-20130614|10348_1  90 FDIKLTGYdDKAKIKIIKEIRGLTGLGLKEAKEVVEGVPSVFMKEIKKEEADEIVKKITELGGKIELE 157
                  9*******9999******************************************************95 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0     8e-06     0.055      37      74 ..      43      88 ..      20      91 .. 0.48
   2 ?    3.4   0.2     0.013        91      16      43 ..     121     148 ..     117     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8e-06
   PF00428.14 37 eliangsakla........aaaaaaaaaaaaaaaaaaaeeekkeee 74
                 e ++  ++k+         aa+ a aa  +a++ ++aa+ +k+e+e
  MMETSP0890-20130614|10348_1 43 EFLELFKEKAGlkdsdlmgAAPVAVAAPVGAVSTEEAAAPPKEEKE 88
                 4444444443345555554333333344444444444444444433 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.013
   PF00428.14  16 veveaerlkllvkalegkdikeliangs 43 
                  +ev +  +++++k++++++ +e++++++
  MMETSP0890-20130614|10348_1 121 KEVVEGVPSVFMKEIKKEEADEIVKKIT 148
                  678888999**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 522.54
//
Query:       MMETSP0890-20130614|10350_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   20.2   0.0    0.00054   19.7   0.0    1.2  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     4e-08   0.00054      64     114 ..      25      78 ..      11      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4e-08
    PF13911.1  64 pgslqkvleellkrakeigipgnk....dagyltqrGGtflfdadgevlyehrdr 114
                   gs q++++ l++ a    +p n+     ++   q+GGtf++d+ + vly+h d+
  MMETSP0890-20130614|10350_1  25 LGSAQAWWKYLTNVADLSPVPRNLkfgqIPSGVLQLGGTFVVDH-DIVLYAHADQ 78 
                  3456677777777777778888888888889999********99.68*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 418.41
//
Query:       MMETSP0890-20130614|10353_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.66
# Mc/sec: 1052.94
//
Query:       MMETSP0890-20130614|10354_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.9   0.8    3.8e-10   40.2   0.6    2.0  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
  ------ inclusion threshold ------
      0.062   11.5   0.5      0.091   11.0   0.1    1.4  2  PF11898.3  Domain of unknown function (DUF3418)


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.6   5.5e-14   3.8e-10      39     120 .]      95     179 ..      41     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 5.5e-14
                  HHHHHHHCTHHCCSSHHHHHHST..T-SEEEE-S-GGGHHHHHHHHHHTT-.EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE- CS
   PF01408.17  39 aeavaesfgveaysdleelledp..kidavivatpngthadlalaaleagk.hvllEKPlattveeakelvelaekkgkivsvgy 120
                   e vae  +ve  +++e+l +++  k +++++a ++     l ++a++ag  h+llEKP a +v+e++++++ a+++++ v++g+
  MMETSP0890-20130614|10354_1  95 EEVVAEMPQVEFHASIEDLYKKSnsKAKIALIAGRTVDNPTLFRQAIQAGAtHILLEKPGAPSVDELQAMANEAKEQNVAVYMGF 179
                  34558888888999*******99999*******************************************************9986 PP

>> PF11898.3  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.3e-05     0.091     358     460 ..      97     199 ..      86     228 .. 0.87
   2 ?   -3.7   0.0      0.36   2.5e+03     371     429 ..     320     351 ..     299     374 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.3e-05
    PF11898.3 358 GlrrLlllqlkeqlkylekklpnlaklalafkplgsveelrddlldaaldrlfleeplprdeaeFealleevrselvataqevarlveeilaeyqelakklkg 460
                   ++++ +++++ ++  l kk +++ak+al      +  +l +++++a + +++le+p   + +e +a+++e++++ va+   +++ +++ ++ + ++a++  g
  MMETSP0890-20130614|10354_1  97 VVAEMPQVEFHASIEDLYKKSNSKAKIALIAGRTVDNPTLFRQAIQAGATHILLEKPGAPSVDELQAMANEAKEQNVAVYMGFIKNIASYVTDALQVAQANPG 199
                  567788899999*************************************************************************999999999888877665 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.36
    PF11898.3 371 lkylekklpnlaklalafkplgsveelrddlldaaldrlfleep.....lprdeaeFealleev 429
                  +k +++++ +                                +p     l ++e e+++l+e+ 
  MMETSP0890-20130614|10354_1 320 AKIVQRRMAE--------------------------------HPdwlsyLLTQELEYAQLKERC 351
                  2333333333................................3333333333333444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.71
# Mc/sec: 1353.44
//
Query:       MMETSP0890-20130614|10356_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-65  218.2   1.1    1.2e-64  217.9   0.7    1.1  1  PF01267.12 F-actin capping protein alpha subunit


Domain annotation for each model (and alignments):
>> PF01267.12  F-actin capping protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.9   0.7   8.5e-69   1.2e-64       2     261 ..      23     292 ..      22     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: 217.9 bits;  conditional E-value: 8.5e-69
   PF01267.12   2 kkeiaaslieqaPpgelndVvndlrtllnddqslksavaealeeyneeqlvvielpeldekviiskanklenerYldpkskksfafDhlkqtvsdvesyeleeeeletf..........raelekkleaYvkehy..psgvlsvlpeeeeeek..tlaiiivgnrynpsnFwtGrwrseytvdeqastklkGsikvqvHYyEdGNVqlktnkevsesvsesneqslasqivkaIsklenkyqlelnesynelnekafkaLRRqLPvtrqKvdWd 261
                  k  i+++l+ +aPpgel +V +d  +l+ ++      +a  ++ yn e+l  i+l+++++k i++++++++ ++Y+dp +  + a+Dh+  t  +v  ++++e e++t+          r+ +e+kl++Yv+ +y  ++g+++v++ ++ +e+  +l+i+i g+++n+ n+w+G+wrs+++v+  +s+ ++G+ikv++HY+EdGNVql+t+k+++ s  +  ++sl  +iv+ I++ e+++q+ l+++y ++++++fka+RR +P+tr+K+ W+
  MMETSP0890-20130614|10356_1  23 KLAIVQHLMLNAPPGELDEVKSDALNLVPENLVSPAMLAGICRAYNVENLRAIQLEGENKKLIVCSQGEIDPTKYVDPSTGYVYAVDHVAGTTERVIAQKQVEDEETTIesdlnagtelRQMVENKLNEYVSGRYpnNHGACAVYDATSGKEEdvLLHIVISGENVNLRNYWSGNWRSSWQVS--SSNIIQGEIKVRAHYFEDGNVQLQTTKKIEASSLS--TDSLPAAIVNYIQENESNLQQGLEDMYANMSHETFKAMRRVMPITRTKMKWN 292
                  5679**************************666666788899***********************************************998888877665555555545555666666999*************76679*****999887777799**************************..5789***************************6554..469************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:01.24
# Mc/sec: 587.49
//
Query:       MMETSP0890-20130614|10355_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   13.6   0.0      0.034   13.1   0.0    1.2  1  PF04654.7  Protein of unknown function, DUF599
      0.038   13.9   0.0       0.11   12.4   0.0    1.7  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
       0.11   10.6   0.1       0.15   10.2   0.0    1.1  1  PF02480.11 Alphaherpesvirus glycoprotein E
       0.11   12.1   0.1       0.15   11.6   0.1    1.1  1  PF13295.1  Domain of unknown function (DUF4077)
       0.11   12.2   0.0       0.13   12.0   0.0    1.1  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region
        5.2    6.3   8.8          2    7.7   3.5    2.3  2  PF04886.7  PT repeat


Domain annotation for each model (and alignments):
>> PF04654.7  Protein of unknown function, DUF599
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.5e-05     0.034       3      45 ..      54      98 ..      49     111 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.5e-05
    PF04654.7  3 avplfllvwvgyhvflehrikrrptligimaenRraWvrrml...s 45
                 ++ + l+ +vgyhvf+ hr ++++   ++++++R++W++++    s
  MMETSP0890-20130614|10355_1 54 FFLIILIGYVGYHVFSLHRNRSEH-DRELNSKHREEWASQLHkrlS 98
                 344556778999*****9998887.4689**********9984444 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.8e-05      0.11      50      95 ..      32      77 ..      20      87 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.8e-05
    PF06024.7 50 eeeskaekaqatnillisllavlcvlvllyviyYFvilrerqksst 95
                 +++++  +a+     +i++lav+ +++l+  + Y v++  r++s  
  MMETSP0890-20130614|10355_1 32 TNKKNDDAASPHLLAVIIILAVFFLIILIGYVGYHVFSLHRNRSEH 77
                 2222334566666777888888888888888888898877766544 PP

>> PF02480.11  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.5e-05      0.15     328     431 ..      18     129 ..       4     140 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6.5e-05
   PF02480.11 328 esdppatpapsaepakpeartapyllllaavlgaavlll.vvlllvlvcvt.krrrrkaye......krlspfspvYtsLPtnelvedvsedeesedeevdvdeeeeasdka 431
                  + +p   p++ +e +++++ +a    lla+++++av  l +++  v+++v+  +r+r++ +      +r ++ s    +L t+  +++++     e +e+ v e+  +s+++
  MMETSP0890-20130614|10355_1  18 TLSPTLIPTRLSENTNKKNDDAASPHLLAVIIILAVFFLiILIGYVGYHVFsLHRNRSEHDrelnskHREEWASQLHKRLSTKARIVEDERRRIAETQEAPVTERTMSSQEQ 129
                  4555555555556666666665555555555555544330333444444440444444444778887777788888888888888666666666666666665555544433 PP

>> PF13295.1  Domain of unknown function (DUF4077)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.6e-05      0.15      15      43 ..      38      66 ..      27      73 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.6e-05
    PF13295.1 15 esqknhlllfiticsfflgiiaigyygyi 43
                 ++   hll +i i+++f+ ii igy gy 
  MMETSP0890-20130614|10355_1 38 DAASPHLLAVIIILAVFFLIILIGYVGYH 66
                 45667**********************94 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.7e-05      0.13      55     147 ..      45     178 ..      41     258 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.7e-05
                  S----THHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------------.................................................. CS
   PF02932.11  55 ipligkyllftmivvtllieiavvvlnvhhrsprthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanssrleselgkepkk...............................................s 147
                   ++i+ +++f++i+ +  + + v+ l   +rs++ ++  ++ r+ +      +l  kr st+ +  + ++++  ++++++++e+ +  ++++                                               s
  MMETSP0890-20130614|10355_1  45 LAVIIILAVFFLIILIGYVGYHVFSLHR-NRSEHDRELNSKHREEWA----SQL-HKRLSTKARIVEDERRRIAETQEAPVTERTMSSQEQGktssgrrhlrfeddpvdsplvnvykeqdthpvdtrsyspyglnqdqgS 178
                  5788888888888888888888888877.677777777777776554....333.3444444444444444444444444333333333322223345666666666666666555555555555555555555555550 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.5   0.00087         2      10      23 ..       4      17 ..       1      28 [. 0.55
   2 ?   -1.7   0.1       0.7   1.6e+03      22      28 ..     254     260 ..     252     262 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00087
    PF04886.7 10 PTvqPTgqPtaqPT 23
                 PT+ PT+ P+  PT
  MMETSP0890-20130614|10355_1  4 PTQRPTASPSVVPT 17
                 55555555555554 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.7
    PF04886.7  22 PTdqPta 28 
                  +T+q t+
  MMETSP0890-20130614|10355_1 254 TTNQATD 260
                  5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.46s 00:00:01.14 Elapsed: 00:00:01.34
# Mc/sec: 484.64
//
Query:       MMETSP0890-20130614|10358_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-23   81.8   0.0    5.8e-23   81.3   0.0    1.2  1  PF01494.14 FAD binding domain
    0.00046   19.0   0.1       0.04   12.6   0.0    2.3  2  PF01266.19 FAD dependent oxidoreductase
    0.00047   20.0   0.0     0.0011   18.7   0.0    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0014   18.8   0.1     0.0052   17.0   0.1    2.1  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.01   14.5   0.0      0.015   14.0   0.0    1.2  1  PF00890.19 FAD binding domain
      0.014   14.2   0.2      0.087   11.6   0.1    2.1  1  PF05834.7  Lycopene cyclase protein
      0.022   14.5   0.0       0.04   13.6   0.0    1.4  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
       0.03   12.3   0.0      0.045   11.8   0.0    1.2  1  PF06039.10 Malate:quinone oxidoreductase (Mqo)
      0.032   13.2   0.0      0.058   12.3   0.0    1.4  1  PF01946.12 Thi4 family
      0.085   12.5   0.0       0.23   11.1   0.0    1.7  1  PF13454.1  FAD-NAD(P)-binding
       0.14   11.5   0.2       0.59    9.5   0.0    2.0  2  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   4.7e-26   5.8e-23       3     352 ..      76     436 ..      74     440 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 4.7e-26
                  CEEE--------HHHHHHHHH...HHEEEEESSSCCCH------BEHHHHHHHHC---HHHHHCT-.EEE--EEEEEEEHHTTSS-EE-SEEEEECC.....CHGGTT-CCE--ECCCCCCHHHHHHC--EEESS-CECCSCCC..HHHHHHCCCCEE----EEEEEECEEE-------HCHHHS-GG.EEEEEEC-EE-EEEEEECS.-STTTTSE....SCEEEEC----E.EEEEECCTTEEEEEE-B-TT--GGGS..GHHHHHHHHHHHCHHHHCC...T--EEEEEEEEEEE-EEEEECSSEETTEE-----SEE--S------HHHHHHHHHHHHHHHHHHH--B-GGGGGHHHHHHHHHHHHH CS
   PF01494.14   3 dVlIVGaGpaGlmlallLsea..GvrvvlvekhsttvvlprAdglnqrtmellrqlGledrilaegapnelmgealynelsdtrikverpkaradle.....lesspervtvypqteleriLvehaeerglqvrfktevlsleq..deegvtavvrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetvyeagvldvlfda.dlsdiveg....vvlilsaesrgv.mviPlesanlerfyvqvearaekeer..sekfteeevkarlreavge...ktldveieevsawevaqrvaeryrkgrvflaGDAaHihpPtgGqGlNtaiqDaynLawkLaavlkGeAkeelLdtYeeerrpvaqav 352
                   V+I GaG  Gl+la+ Ls+    v+v+++ek s+  + +    l +  m++l++  l+++i+++  ++ + + +l n ++d        +  a+ +     ++ +++ + v+  +el+ iL++h   ++ +v+ ++ v+s  q  + + +t  v  + ++   ++ a+ lvGaDG +S vr+++  e  +ge++  +    +v + + d +++ eg     v+i+ a+  ++  ++P +  +  +f+ + + +ae e     + +  +++ + + + v++   +t d +ie+   ++      + +++g v l GD++H + P  GqG   ai+Da+ L   L a  k +  ++ L+ Y ++r+ +++av
  MMETSP0890-20130614|10358_1  76 RVVIAGAGVGGLTLANALSRLepKVQVTILEKTSQFRRFGGPIQLASNAMQILKT--LDHEIYSQIESKFTWTGNLTNGIKDGIR----DEWYAKFDlkapaANRNMPFTGVIERPELQEILLSH--LKPGTVQNGKAVVSYAQqcTLDDETCPVVVELSDDS-RIGADVLVGADGIWSEVRAAMRNEpSRGEGSGATYSGYTVFAGElDYDSPDEGevgyKVYIGPAQYFVItNIGPKRY-QWYAFLARPPNSAETEAMpnGAGIYLQNLFQGWSKDVHSilqATRDDQIEQRDLYDRPPTAFKGWSDGPVALLGDSIHSMMPNLGQGGCQAIEDAMVLTEELEAITKRTQVDAALKNYRDRRLIRSAAV 436
                  69****************98622499****************************8..6999***999999999999999666532....22222222223344678999999*************..778889999998888772345677777777776666.9********************99988899887666666666666777777777998755555444444336666666.33333333333333333344667889999999999998533256677999999*******************************************************************998877765 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.3e-05      0.04       2      31 ..      77     108 ..      76     113 .. 0.93
   2 ?    4.1   0.0     0.013        16     179     205 ..     219     247 ..     191     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.3e-05
                  EEEE----HHHHHHHHHHH..TT-EEEEEESS CS
   PF01266.19   2 vviiGgGivGlstAyeLar..rglkVtllekg 31 
                  vvi G+G+ Gl+ A  L+r  ++++Vt+lek 
  MMETSP0890-20130614|10358_1  77 VVIAGAGVGGLTLANALSRlePKVQVTILEKT 108
                  9*****************************96 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.013
                  C..EE.EEEEES..EEEEEEEE----THHH CS
   PF01266.19 179 r..vsgvetedgs.iradkvvlAaGawssk 205
                  +  v+ ve++d s i+ad++v A G+ws  
  MMETSP0890-20130614|10358_1 219 TcpVV-VELSDDSrIGADVLVGADGIWSEV 247
                  14477.99999998*************975 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.1e-07    0.0011       1      31 [.      79     111 ..      79     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.1e-07
    PF13450.1   1 IvGaGlsGlvaAylLaka..gkdvlvlekrdrl 31 
                  I GaG++Gl++A +L++   +++v++lek +++
  MMETSP0890-20130614|10358_1  79 IAGAGVGGLTLANALSRLepKVQVTILEKTSQF 111
                  77***************66789******98654 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.2e-06    0.0052       1      36 [.      76     113 ..      76     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.2e-06
                  EEEEE---HHHHHHHHHHHHTT..SEEEEEESSSSSST CS
   PF00070.22   1 rvvvvGGGyiGlElAaalaklg..kkVtvierrdrllr 36 
                  rvv+ G+G+ Gl lA+al++l    +Vt++e  ++++r
  MMETSP0890-20130614|10358_1  76 RVVIAGAGVGGLTLANALSRLEpkVQVTILEKTSQFRR 113
                  79******************9977799*****999993 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-05     0.015       2      50 ..      77     130 ..      76     155 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-05
                  EEEE-------HHHHHHHC.HTT.-EEEE-SS-CCGS...GGGG-----B---. CS
   PF00890.19   2 vvViGsGlAGlaAAleaae.agl.kvavvekeqetgg...atawsqGgidavls 50 
                  vv+ G+G++Gl+ A ++++ + + +v+++ek+++++     ++ ++  ++++ +
  MMETSP0890-20130614|10358_1  77 VVIAGAGVGGLTLANALSRlEPKvQVTILEKTSQFRRfggPIQLASNAMQILKT 130
                  9*****************987778********9987555577777777777664 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     7e-05     0.087       2      36 ..      77     111 ..      76     275 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-05
    PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagpkl 36 
                  +vi GaG  gl lA +l++ +p+++v++++  ++ 
  MMETSP0890-20130614|10358_1  77 VVIAGAGVGGLTLANALSRLEPKVQVTILEKTSQF 111
                  89***************************998775 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-05      0.04       1      50 [.      76     136 ..      76     181 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-05
                  SEEEE----HHHHHHHHHH..HTTSEEEEE.........CSSSSSTBTSGGHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9   1 dvviiGgGpaGlsaakdla..qkglkvali.........ekeggtcvnrgclpkkllveva 50 
                  +vvi G+G++Gl+ a+ l     +++v+++         ++  +   n ++++k+l +e++
  MMETSP0890-20130614|10358_1  76 RVVIAGAGVGGLTLANALSrlEPKVQVTILektsqfrrfGGPIQLASNAMQILKTLDHEIY 136
                  69*****************555555566665544444222222222244455554444444 PP

>> PF06039.10  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.6e-05     0.045       3      40 ..      73     110 ..      71     113 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.6e-05
   PF06039.10   3 ekvdvvliGaGimsatlgvlLkelePeweielverldk 40 
                  +   vv+ GaG+ + tl+  L++leP+++++++e+ ++
  MMETSP0890-20130614|10358_1  73 KPLRVVIAGAGVGGLTLANALSRLEPKVQVTILEKTSQ 110
                  56689*****************************9765 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.7e-05     0.058      19      50 ..      76     109 ..      66     146 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.7e-05
                  EEEEE-------HHHHHHHTS..TS-EEEEESSS CS
   PF01946.12  19 DvvivGaGssGltaayylakk..dlkvailerkl 50 
                   vvi GaG  Glt a  l++   +++v+ile+  
  MMETSP0890-20130614|10358_1  76 RVVIAGAGVGGLTLANALSRLepKVQVTILEKTS 109
                  69*****************987889999***864 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.23       1      59 [.      78     135 ..      78     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00018
    PF13454.1   1 aIiGaGprGlsvlerLlarakkekpleitvfdp.spa.gaggvwrtdqseelllNtpasqi 59 
                  +I GaG+ Gl+++++L +    e ++++t+ ++ s++   gg+ + + +++ +l t  ++i
  MMETSP0890-20130614|10358_1  78 VIAGAGVGGLTLANALSRL---EPKVQVTILEKtSQFrRFGGPIQLASNAMQILKTLDHEI 135
                  699****************...599*******97788766777777777777777666655 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00047      0.59      17      49 ..      71     103 ..      66     117 .. 0.84
   2 ?   -1.7   0.0       1.4   1.7e+03      29      63 ..     392     426 ..     391     438 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00047
                  -B---EEEEE-------HHHHHHHH---EEEE- CS
   PF01262.16  17 gvkpakvvviGaGvvGlgAievakglgaevval 49 
                  + kp++vv+ GaGv Gl  ++  ++l+ +v ++
  MMETSP0890-20130614|10358_1  71 EEKPLRVVIAGAGVGGLTLANALSRLEPKVQVT 103
                  679********************9998777654 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.4
                  -----HHHHHHHH---EEEE--SSTTHHHHHHH-- CS
   PF01262.16  29 GvvGlgAievakglgaevvaldkrperleqveslg 63 
                  G  G +Aie a+ l  e +a+ kr ++  ++++  
  MMETSP0890-20130614|10358_1 392 GQGGCQAIEDAMVLTEELEAITKRTQVDAALKNYR 426
                  667999***99999999999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.82
# Mc/sec: 1648.23
//
Query:       MMETSP0890-20130614|10370_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-05   24.0   2.7    3.9e-05   23.1   1.8    1.5  1  PF02183.13 Homeobox associated leucine zipper
     0.0072   15.6   0.9      0.013   14.8   0.6    1.4  1  PF04977.10 Septum formation initiator
  ------ inclusion threshold ------
      0.012   15.4   1.3      0.012   15.4   0.9    1.6  2  PF00170.16 bZIP transcription factor
      0.013   13.2   0.1      0.013   13.2   0.1    1.1  1  PF05622.7  HOOK protein
      0.022   14.4   0.1      0.035   13.8   0.1    1.5  1  PF06584.8  DIRP
      0.023   14.3   1.1       0.04   13.6   0.7    1.4  1  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.03   14.0   1.1       0.12   12.1   0.1    2.1  2  PF05377.6  Flagella accessory protein C (FlaC)
      0.049   13.1   0.5      0.074   12.5   0.3    1.2  1  PF13874.1  Nucleoporin complex subunit 54
      0.057   13.0   0.1      0.073   12.6   0.0    1.4  1  PF10805.3  Protein of unknown function (DUF2730)
       0.21   11.3   3.4       0.24   11.1   0.4    2.2  2  PF04508.7  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.8   2.9e-08   3.9e-05      15      43 ..      73     101 ..      71     103 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.9e-08
   PF02183.13  15 daLkaendsLqkEkekLraevlsLkeklq 43 
                  +aL++en+sL+kE e+Lr+ v +L+++l 
  MMETSP0890-20130614|10370_1  73 EALRQENESLRKEREELRNTVNELNARLS 101
                  89***********************9996 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.6   9.3e-06     0.013      25      52 ..      71      97 ..      69     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.3e-06
   PF04977.10 25 eiaalqaelaklkaeneeLeaevkdLks 52
                 +++al +e+++l++e+eeL + v++L +
  MMETSP0890-20130614|10370_1 71 DVEALRQENESLRKEREELRNTVNEL-N 97
                 57899999999999999999999999.4 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   4.1e+03      24      37 ..      22      35 ..      21      44 .. 0.59
   2 ?   15.4   0.9   8.6e-06     0.012      35      61 ..      72      98 ..      70     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHH CS
   PF00170.16 24 KkaeieeLeekvke 37
                 Kk+e  ++ ek+ +
  MMETSP0890-20130614|10370_1 22 KKEEFRKYLEKSGV 35
                 56666666555555 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 8.6e-06
                 HHHHHHHH.......HHHHHHHHHHHH CS
   PF00170.16 35 vkeLeaeNkaLkkeleelkkevaklks 61
                 v++L +eN++L+ke eel+++v +l +
  MMETSP0890-20130614|10370_1 72 VEALRQENESLRKEREELRNTVNELNA 98
                 899*******************99976 PP

>> PF05622.7  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.2e-06     0.013     399     426 ..      71      98 ..      13     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.2e-06
    PF05622.7 399 klealqkekerllaerDsLrEtneELrc 426
                   +eal +e e+l +er+ Lr+t++EL  
  MMETSP0890-20130614|10370_1  71 DVEALRQENESLRKEREELRNTVNELNA 98 
                  579**********************974 PP

>> PF06584.8  DIRP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.6e-05     0.035      38      76 ..      59      96 ..      19     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.6e-05
    PF06584.8 38 kirrslgkpRrlSakFlkeEreeLekkRekiRelqekkl 76
                  i+r +g p  +  + l++E e+L+k Re +R+   ++l
  MMETSP0890-20130614|10370_1 59 YIKRYMGAPTGVDVEALRQENESLRKEREELRNTV-NEL 96
                 79******************************943.333 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   2.9e-05      0.04      16      58 ..      74     102 ..      70     106 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.9e-05
    PF12329.3  16 qLmeEgekLskkelkhnntikkLrkknkelekeieelkkklek 58 
                  +              ++++  +Lrk+ +el ++++el+++l++
  MMETSP0890-20130614|10370_1  74 A--------------LRQENESLRKEREELRNTVNELNARLSD 102
                  4..............4555555666666666666666555554 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.4   5.5e+02      17      45 ..      17      48 ..       9      49 .. 0.66
   2 ?   12.1   0.1     9e-05      0.12      16      40 ..      72      96 ..      66     102 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.4
    PF05377.6 17 atvrkeleelsksvek...ikenvkdvlkLYE 45
                 +t  ++ ee +k +ek   i+   k ++ LYE
  MMETSP0890-20130614|10370_1 17 QTPDSKKEEFRKYLEKsgvIDALTKVLVGLYE 48
                 55566667777777764445666688888888 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 9e-05
    PF05377.6 16 vatvrkeleelsksvekikenvkdv 40
                 v+ +r+e+e+l+k+ e++ ++v ++
  MMETSP0890-20130614|10370_1 72 VEALRQENESLRKEREELRNTVNEL 96
                 6677777777777777777777554 PP

>> PF13874.1  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   5.4e-05     0.074      94     126 ..      71     103 ..      69     107 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.4e-05
    PF13874.1  94 kleilrnkgyalsaeeeelrnkleqlekelnap 126
                   +e lr+ + +l++e+eelrn +++l+++l++ 
  MMETSP0890-20130614|10370_1  71 DVEALRQENESLRKEREELRNTVNELNARLSDD 103
                  5899**************************986 PP

>> PF10805.3  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.3e-05     0.073      57      93 ..      62      98 ..      27     101 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.3e-05
    PF10805.3 57 kleslPtakdvhaLkieltelrGelkelsaqiqslsh 93
                 ++   Pt  dv+aL+ e ++lr e +el++++++l+ 
  MMETSP0890-20130614|10370_1 62 RYMGAPTGVDVEALRQENESLRKEREELRNTVNELNA 98
                 56678***************************99986 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.5      0.25   3.4e+02      11      22 ..      76      87 ..      70      88 .. 0.72
   2 ?   11.1   0.4   0.00018      0.24       4      21 ..      87     104 ..      84     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.25
    PF04508.7 11 sdLekqLsdcrr 22
                 ++++++L+ +r+
  MMETSP0890-20130614|10370_1 76 RQENESLRKERE 87
                 567788888887 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00018
    PF04508.7   4 drlRrkIsdLekqLsdcr 21 
                  ++lR+++++L+ +Lsd+ 
  MMETSP0890-20130614|10370_1  87 EELRNTVNELNARLSDDL 104
                  79**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       863  (0.0631217); expected 273.4 (0.02)
Passed bias filter:                      749  (0.0547835); expected 273.4 (0.02)
Passed Vit filter:                       136  (0.00994734); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|10378_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.51
# Mc/sec: 253.73
//
Query:       MMETSP0890-20130614|10399_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-08   31.8   0.0    1.4e-07   31.0   0.0    1.4  1  PF05347.10 Complex 1 protein (LYR family)
      8e-07   29.0   0.0    1.6e-06   28.0   0.0    1.5  1  PF13232.1  Complex1_LYR-like
    0.00016   21.9   0.0     0.0002   21.7   0.0    1.1  1  PF13233.1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     3e-11   1.4e-07       2      58 ..      16      76 ..      15      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3e-11
   PF05347.10  2 qvLsLYRalLRaa.rkfpdyn...areyirrriReeFrknknvtdpekieallkegkelLe 58
                 q+++L+R++ R++   +  y+     +++r+ +R++F++n +vtdp  i  l  +g+  L+
  MMETSP0890-20130614|10399_1 16 QAIRLFRKICREIpTILTIYDvdmSNREARDVVRKRFQENAHVTDPNTITILCHKGQVGLD 76
                 899**********777888889999*************************99999998776 PP

>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.6e-10   1.6e-06       2      59 ..      16      77 ..      15      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.6e-10
    PF13232.1  2 qvLsLYRalLrearr......fpsyssreyfrrriRdeFrknknvtdpekiakllkegqeeLel 59
                 q+++L+R + re         +   +++  +r+ +R +F++n +vtdp  i+ l  +gq  L++
  MMETSP0890-20130614|10399_1 16 QAIRLFRKICREIPTiltiydVDMSNRE--ARDVVRKRFQENAHVTDPNTITILCHKGQVGLDE 77
                 7789999999999886555556656666..9****************************99986 PP

>> PF13233.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.3e-08    0.0002       2      73 ..      18     106 ..      17     118 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.3e-08
    PF13233.1   2 lrlYRellrelrkyerrlnahkfnaeyeqgdkylrenarrefashasln........................deeqareflqeaenylafleaqr 73 
                  +rl+R+++re++ +++ + +  +n+e    +  +    r+ f+ +a+++                        +++q + fl+  e+  ++++a +
  MMETSP0890-20130614|10399_1  18 IRLFRKICREIPTILTIYDVDMSNRE---ARDVV----RKRFQENAHVTdpntitilchkgqvgldeailqykTKAQLMAFLEKTEFTEKQIKAMK 106
                  89***********9999977555554...77788....***************************9999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      560  (0.0409596); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.69
# Mc/sec: 437.60
//
Query:       MMETSP0890-20130614|10412_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-30  105.1   0.0    4.4e-30  104.3   0.0    1.4  1  PF00175.16 Oxidoreductase NAD-binding domain
    1.2e-22   79.7   0.0    2.8e-13   49.6   0.0    2.3  2  PF00970.19 Oxidoreductase FAD-binding domain
    4.8e-05   23.1   0.0     0.0002   21.1   0.0    1.9  2  PF08030.7  Ferric reductase NAD binding domain
    7.1e-05   22.6   0.0     0.0002   21.1   0.0    1.7  2  PF08021.6  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   1.3e-33   4.4e-30       1     109 []     185     293 ..     185     293 .. 0.97

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 1.3e-33
                  EEE-----HHHHHHHHHHHCC.HCCCEEEEEEEESSGGGSTTHHHHHHHHHHSTTEEEEEEC.TTTTCSSSSBB--HHHHHHHCHHHHHHCTTTEEEEEE-HHHHHHHHHH CS
   PF00175.16   1 miaGGtGiaplrsvlkalled.edetkvvlvyGvrteedlllreeleelakklpgrlkvvav.srtddgwkggkgyvtdalleelleeeidkeetdvyvCGppgMakavrk 109
                  m aGGtGi+p+++++ a+l+d +d t++ l+++++te+d+l+r++le+l++k+p r++++++ +r++++wk ++g++++++++ +l+     ++ ++++CGpp+M+++++k
  MMETSP0890-20130614|10412_1 185 MMAGGTGITPMLQIIAAVLKDsSDATQLSLIFANQTEDDILVRDHLERLQNKYPTRFHLWYTlDRPSSNWKFSTGFIDADMIKAHLP--GPASDSLILMCGPPPMIQYACK 293
                  89*******************99****************************************************************..778899************9986 PP

>> PF00970.19  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.5e-10   1.9e-06       2      43 ..      42      84 ..      41      88 .. 0.90
   2 !   49.6   0.0   8.3e-17   2.8e-13      43      99 .]     100     165 ..      95     165 .. 0.95

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.5e-10
                 EEEEEEEESSSSEEEEEEE-SSTT-B-------EEEEEEE... CS
   PF00970.19  2 aklvekeelshdvrlfrlklpsedqvlglpvGqyvflrlp.ie 43
                 +k++e+e+lshd++++rl+lps++  lglpvG+++ + +p ++
  MMETSP0890-20130614|10412_1 42 LKVSEVEQLSHDTKRVRLALPSSKMILGLPVGKHFKVFCPnVK 84
                 5899*******************************99888555 PP

  == domain 2    score: 49.6 bits;  conditional E-value: 8.3e-17
                  .--EEEEEEE.SSSTTEE-EEEEEEE--.........----HHHHHHC-----EEEEE-EE--EEC CS
   PF00970.19  43 egeevvRaYspasspsekgelellvkvv.........pgGkmsqyldelkvgdtlelkGPlGkfey 99 
                  + +e+ R Y+p+ss+++ g+++l+vkv+         +gGkmsq++ +l+vgd l ++GP G +ey
  MMETSP0890-20130614|10412_1 100 DSTEIERKYTPTSSDDDFGFVDLVVKVYkggiidrfpDGGKMSQHIGKLEVGDELAISGPWGMIEY 165
                  677899********************************************************9987 PP

>> PF08030.7  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.8e-08    0.0002       3      76 ..     182     247 ..     180     281 .. 0.82
   2 ?   -0.5   0.0      0.26     9e+02     131     142 ..     278     289 ..     262     294 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.8e-08
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF08030.7   3 nvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTs 76 
                   v + agG+Gitp++ i+  +lk s+    + ++++li++++ ++++ + +d L+ l+++ ++   + h ++T 
  MMETSP0890-20130614|10412_1 182 KVGMMAGGTGITPMLQIIAAVLKDSS----DATQLSLIFANQTEDDILV-RDHLERLQNKYPT---RFHLWYTL 247
                  6789*********************9....99************99955.5577766666555...66666665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.26
                  xxxxxxxxxxxx RF
    PF08030.7 131 gvfvCGppklvk 142
                   +++CGpp +++
  MMETSP0890-20130614|10412_1 278 LILMCGPPPMIQ 289
                  5789****9987 PP

>> PF08021.6  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.8e-08    0.0002       1     114 [.      43     160 ..      43     163 .. 0.87
   2 ?   -1.7   0.0      0.73   2.5e+03      32      52 ..     210     231 ..     198     276 .. 0.62

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.8e-08
    PF08021.6   1 tvvrverlspslrRitltgeelaafasdgpdqhikLlfpepgqeepvppelgeeglqw..lpedqrpvmRtYTvraldaeaeeldiDfvlHgde........gpasrWAarakpGdelailgpg 114
                  +v++ve+ls +  R+ l+ +  + +     ++h+k++ p+ ++ +        e+     +++d+  + R+YT+++ d + + +d+ + + +          g +s+   + ++Gdelai gp 
  MMETSP0890-20130614|10412_1  43 KVSEVEQLSHDTKRVRLALPSSKMILGLPVGKHFKVFCPNVKGVKA------GEWNGKpdPEADSTEIERKYTPTSSDDDFGFVDLVVKVYKGGiidrfpdgGKMSQHIGKLEVGDELAISGPW 160
                  5899************************************998864......23322234999*******************99888888876678888888*******************995 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.73
    PF08021.6  32 qhikLlfpepgqeep.vppelg 52 
                    + L+f+++ +++  v  +l+
  MMETSP0890-20130614|10412_1 210 TQLSLIFANQTEDDIlVRDHLE 231
                  4577788777777664433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.84
# Mc/sec: 881.52
//
Query:       MMETSP0890-20130614|10410_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.1   1.8       0.13   12.0   1.2    1.2  1  PF14198.1 Transposon-encoded protein TnpV
       0.18   11.7   1.1       0.24   11.4   0.7    1.2  1  PF13270.1 Domain of unknown function (DUF4061)


Domain annotation for each model (and alignments):
>> PF14198.1  Transposon-encoded protein TnpV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2     2e-05      0.13      64     110 ..      22      65 ..       8      66 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2e-05
    PF14198.1  64 erledlvkqllekegvteeLkaedqmewvrrmnnikaqaeEivlkel 110
                  e +  ++++++++ +v+e   ++  +++ rrm ++ka+a E ++ke+
  MMETSP0890-20130614|10410_1  22 EVVGTTLRAMQRASEVQE---KRAAIHYKRRMAELKAKAAEQARKEI 65 
                  67788999*********8...67779****************99987 PP

>> PF13270.1  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   3.4e-05      0.24      30      73 ..      26      69 ..      18      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.4e-05
    PF13270.1 30 csleqlekvReqQEklArlhfeldveeeelseeeeqkktkaden 73
                  +l  +++  e QEk A +h++  ++e ++++ e+ +k+ +++n
  MMETSP0890-20130614|10410_1 26 TTLRAMQRASEVQEKRAAIHYKRRMAELKAKAAEQARKEIQNSN 69
                 58899****************99888888887766666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1303  (0.0953043); expected 273.4 (0.02)
Passed bias filter:                      819  (0.0599035); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 252.59
//
Query:       MMETSP0890-20130614|10413_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-46  156.6   0.0    8.3e-46  156.1   0.0    1.2  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    1.8e-11   43.9   1.2    4.3e-10   39.4   0.8    2.3  1  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.12   11.9   1.1       0.34   10.4   0.0    2.3  2  PF02809.15 Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.0   1.8e-49   8.3e-46       3     272 .]      59     437 ..      58     437 .. 0.96

  Alignments for each domain:
  == domain 1    score: 156.1 bits;  conditional E-value: 1.8e-49
                  ---------THHHHHHHHHHHTSHHHHHHHHTTHCCH....H-TTHHTTTHHHHHHHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGG.......GCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-....-SCHHHHC-EEEEEEEEETTCEEE........................................................EEEECCB-SEEEEEEE-E......EEETTTTEEEE-----B--SEEE-GGGBSCHHH.............................................................--BTTSSCEEEEEEEEEE--.-TT---EEEEEESS-TT-EEEEETTEEEEE-HHHHTTC........EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx RF
   PF00443.24   3 vtGleNlGntCYmnsvlQcLvsipelrdyllryeervaeineeneleeeaqlaraladlfkklvenssekkavsPsefkktlkkineqfs.......gykQqDahEfllflLdqlhedlnrlnkkektekqkaedsndslitdlfkgqlksrlkclecknv........................................................kvklkrlPeiLiihlkRf......kyseerssnkKlnekvefpleLdlssyvneekk.............................................................eeseskpkkYeLvavvvHsG.slssGHYvayvknneknkWlkfdDetvtevkeeevlke........saYvlfY 272
                  ++Gl+NlGntCYmns++QcL  +pelr+ l++y+                +l  al++ ++ l    +++k++ Ps ++ tl+++ +qf+       g+ QqDa+E+l++l+++l+  l ++n              ++++++lf+++l++ l c e++ +                                                        +  + +lP++L+i++ Rf      ++++ + ++ K+ + v+fp++ d+  y++++ +                                                                 +   +Ye +avv H G s+++GHY+ +v+ ++k+kWl fdD+ vte+++e v+++         aY+ fY
  MMETSP0890-20130614|10413_1  59 PAGLQNLGNTCYMNSTVQCLRAVPELRQSLEEYNGA------------GSSLTGALHHTYNRL---DASTKPIMPSDLILTLRATFPQFAeksrngqGFAQQDAEELLATLFAELSMRLTQNN--------------NNTVDTLFGIDLQENLSCAETQDEppvirqdkarklvcniqgghgastkidhlhegikiglsgtlekrsdilgrnaiwnkTQTIVKLPPYLCIQFMRFfwkptpNNDDHQGVKCKIMRPVSFPETFDVFDYCQQDLQkelkfnrdaygakldqlptsekdqdgdtemsgqddtelakaialsmtndtnavlppdftqhGLPAQFLGEYEIFAVVTHKGrSADGGHYMGWVR-QDKDKWLVFDDDIVTESSTEFVVNNlkgggdehMAYLAFY 437
                  68**************************99888744............5899***********...9999*******************9999999999********************9976..............699*****************************************************************************999***************999999999999999********************9988**********************************************************965555566689************************.*******************999999999***********9 PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.8   9.4e-14   4.3e-10       1     293 [.      60     409 ..      60     415 .. 0.70

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 9.4e-14
    PF13423.1   1 aGlennlnncYlnaLLqllfftldlfeailkhsecskencllceLgflfnmLdsstkgtpcqasnllr....alstipeaaalge...qqdvqeanrFileqlslelltlkvdifhererdkseaesslselfgtklisqnrciscqaek....vkeesllnlelpypp..sekgiklenileeslnseknkeikcesckkkssaevakkftslPpiLgIclkrynek..efgakrlnt....................................................................kvdiplelrlphf............iqddeqenek.plsgefkyeLqavVchigdsltsghlvSlirvaeseksqWylFnDf 293
                  aGl n +n+cY+n+  q l+++++l++ + +       ++l  +L   +n Ld  +  +p   s+l+     ++ +++e+++ g+   qqd +e+ + +  +ls+ l +                +++ + lfg++l++  +c + q+e     + + + l ++++     s+k   l + ++  l+    k+  ++   +    +  +++++lPp L I+  r   k  +++                                                                                      +            + + + ++ + p +    ye  avV h+g s + gh+   +r    +k++W  F+D 
  MMETSP0890-20130614|10413_1  60 AGLQNLGNTCYMNSTVQCLRAVPELRQSLEEYN--GAGSSLTGALHHTYNRLD--ASTKPIMPSDLILtlraTFPQFAEKSRNGQgfaQQDAEELLATLFAELSMRLTQNN--------------NNTVDTLFGIDLQENLSCAETQDEPpvirQDKARKLVCNIQGGHgaSTKIDHLHEGIKIGLSGTLEKR--SDILGRNAIWNKTQTIVKLPPYLCIQFMRFFWKptPNN-----DdhqgvkckimrpvsfpetfdvfdycqqdlqkelkfnrdaygakldqlptsekdqdgdtemsgqddtelA-----------KaialsmtndtnaVLPPDFTQHGlPAQFLGEYEIFAVVTHKGRSADGGHYMGWVRQ---DKDKWLVFDDD 409
                  7*************************9987766..589***************..444555555555400035556667888887999*******9999999999998888..............6799**************99999665423556688999999888766665555555555555333332..34456667889999999999999999988766644333.....1222334666666666666666666655555555555555555555555555555555555555544443...........0444443344444555554444468888889*************************...688*******5 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.58   2.7e+03      11      17 ..      84      90 ..      84      90 .. 0.91
   2 ?   10.4   0.0   7.5e-05      0.34       2      15 ..     336     349 ..     335     350 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.58
                 HHHHHHH CS
   PF02809.15 11 LalSlee 17
                 L++Slee
  MMETSP0890-20130614|10413_1 84 LRQSLEE 90
                 899***8 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 7.5e-05
                  CCHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSl 15 
                  +++ +L++A+alS+
  MMETSP0890-20130614|10413_1 336 QDDTELAKAIALSM 349
                  7999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.95
# Mc/sec: 1117.46
//
Query:       MMETSP0890-20130614|10414_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.7    6.2  13.2        2.3    5.8   9.1    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.1   0.00016       2.3      77     297 ..      86     303 ..      13     323 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00016
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
   PF01496.14  77 eeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvikrekleale.rllwralrgnlyikqaeieevledpkekvekevfiiffvgeellekvkkilesfgaelyevpeteeersellskvnkriedlktvleeteselekvlakiadell...aweeqvskekavyetlnlfsidst.ktliaegWv 297
                  +++e +l + +   e+  ++ + +ee++++ ++  e  ++   +e++e+s++  e +a +++e lk +  a++++ e +   e + l r  ++ l+++q e ee++ + +    ++ +  +++ ++ +e+    + + ++ +++ + ++ +r e+ ++v+++  +l ++ e ++ +  +  ak++ + +    + + ++ e +v+e +++ s ++        gW+
  MMETSP0890-20130614|10414_1  86 TDTETRLAQSRRRFEESARQRAAIEETKKQRQKLLEAKQR--AREAEEISRIRAEREAEKKQEQLKRE--AELVRLEAARDAElARLEREQEAALFLEQQEQEEAIRQRE----ANALALVAKQNAAKEEAAAAAARNEIARISAQVKKAQRDEAAKAVQEQTVELRRREEALRARKLDGEAKARPNCRlipPVLAAIRGEEEVFESQQQQSPNVPiASTFRSGWT 303
                  3333333333333333333333333333333333333333..46778999999999999988999996..9999887665544245788888889999999999999999....888888899999999999999999999999999999*********************9999888888888777551114455555555555555555555555555555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1937  (0.141676); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.35u 0.39s 00:00:01.74 Elapsed: 00:00:01.45
# Mc/sec: 1075.88
//
Query:       MMETSP0890-20130614|10432_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   33.3   0.0    3.8e-08   32.3   0.0    1.5  1  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.082   12.5   0.1       0.19   11.3   0.0    1.6  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
       0.37   10.2   2.1       0.42   10.1   0.3    1.9  2  PF13936.1  Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   8.4e-12   3.8e-08       5      68 ..      83     150 ..      77     151 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 8.4e-12
                  SE.EEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTE...EEEEEESS CS
   PF00240.18   5 gk.titlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgs...tlhlvlrl 68 
                  +  t+ ++v+p+  v++l   ie+  ++pv+qqrLi +G+ +  d +ls  +i++++   t+hl+ rl
  MMETSP0890-20130614|10432_1  83 QGaTVAITVNPDGCVRDLQLEIESVMEVPVNQQRLICAGQNMISDEKLSKFKIAEDAdavTVHLMRRL 150
                  3369**************************************9999999***************9987 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.2e-05      0.19       7      65 ..      81     138 ..      76     146 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.2e-05
                  ESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TT CS
    PF11976.3   7 gkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedg 65 
                   k+g +v i V+pd  +++L  +  + +++p  +q+rLi  G+ +  ++ +   +i ++
  MMETSP0890-20130614|10432_1  81 KKQGATVAITVNPDGCVRDLQLEIESVMEVPV-NQQRLICAGQNMISDEKLSKFKIAED 138
                  58999***************************.************99999999988554 PP

>> PF13936.1  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.59   2.7e+03       3      10 ..     148     155 ..     147     157 .. 0.87
   2 ?   10.1   0.3   9.2e-05      0.42      24      39 ..     195     210 ..     185     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.59
    PF13936.1   3 khLtleER 10 
                  ++L+ +ER
  MMETSP0890-20130614|10432_1 148 RRLSEAER 155
                  79*****9 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 9.2e-05
    PF13936.1  24 reIArkLgrspSTIsr 39 
                  r IAr+ gr  STI +
  MMETSP0890-20130614|10432_1 195 RRIARETGRPESTIRA 210
                  78************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:01.58
# Mc/sec: 650.66
//
Query:       MMETSP0890-20130614|10437_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-36  122.5   0.2    7.6e-16   57.2   0.0    2.2  3  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
       0.12   12.4   0.1        4.6    7.4   0.0    2.3  2  PF09575.5 Small spore protein J (Spore_SspJ)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   9.7e-11   6.7e-07      21      49 .]       4      32 ..       2      32 .. 0.94
   2 !   57.2   0.0   1.1e-19   7.6e-16       1      49 []       9      57 ..       9      57 .. 0.99
   3 !   43.4   0.1   2.2e-15   1.5e-11       1      34 [.      34      67 .]      34      67 .] 0.99

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 9.7e-11
    PF13475.1 21 eeLknDkeivlkAvkqngsalsyaseeLr 49
                  eL+nD+eivl Av q g al yas eL+
  MMETSP0890-20130614|10437_1  4 VELQNDREIVLVAVTQEGFALLYASQELK 32
                 59*************************97 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 1.1e-19
    PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                 DrEivl av++ g+al y+s eLknD+ei+l Av q+ +als aseeL+
  MMETSP0890-20130614|10437_1  9 DREIVLVAVTQEGFALLYASQELKNDREIILVAVTQYACALSDASEELK 57
                 9***********************************************8 PP

  == domain 3    score: 43.4 bits;  conditional E-value: 2.2e-15
    PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAv 34
                 DrEi+l av+++ +al  +seeLknD+eivl+Av
  MMETSP0890-20130614|10437_1 34 DREIILVAVTQYACALSDASEELKNDREIVLAAV 67
                 9********************************8 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.017   1.2e+02      23      33 ..      24      34 ..      17      35 .. 0.85
   2 ?    7.4   0.0   0.00068       4.6      21      33 ..      47      59 ..      41      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.017
    PF09575.5 23 LEdAgkaLkgD 33
                 L  A+++Lk+D
  MMETSP0890-20130614|10437_1 24 LLYASQELKND 34
                 6679*****99 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00068
    PF09575.5 21 gaLEdAgkaLkgD 33
                  aL dA+++Lk+D
  MMETSP0890-20130614|10437_1 47 CALSDASEELKND 59
                 59*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 226.14
//
Query:       MMETSP0890-20130614|10455_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 739.57
//
Query:       MMETSP0890-20130614|10468_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 311.53
//
Query:       MMETSP0890-20130614|10524_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.059   12.3   0.1      0.059   12.3   0.1    1.0  1  PF01540.11 Adhesin lipoprotein
      0.064   12.6   0.1      0.069   12.4   0.1    1.1  1  PF13988.1  Protein of unknown function (DUF4225)


Domain annotation for each model (and alignments):
>> PF01540.11  Adhesin lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.7e-06     0.059     117     165 ..       3      52 ..       1      67 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.7e-06
   PF01540.11 117 akelaernakiqsnieelkk.lskeafelsktvektiaevekkfkiekdf 165
                  a +l    +k   +ie l k lsk+ +els+ v k + evek  k+  +f
  MMETSP0890-20130614|10524_1   3 AEQLKSSSEKQSVEIERLAKdLSKDITELSDKVTKLVPEVEKFGKVATEF 52 
                  56666777777778888865588888899999999999998888887777 PP

>> PF13988.1  Protein of unknown function (DUF4225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     1e-05     0.069      15      63 ..      21      70 ..       4      77 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1e-05
    PF13988.1 15 dselrkksaklyia.ikieeeekiikyvikgigivaGglqivaGiglckt 63
                 +++l+k+  +l  + +k + e + ++ v + +++  Gg+q+++G+ ++ +
  MMETSP0890-20130614|10524_1 21 AKDLSKDITELSDKvTKLVPEVEKFGKVATEFDLYKGGAQVFVGALVATV 70
                 4455555555554404445888899999*****************99733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1136  (0.0830895); expected 273.4 (0.02)
Passed bias filter:                     1025  (0.0749707); expected 273.4 (0.02)
Passed Vit filter:                       124  (0.00906963); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.50s 00:00:00.90 Elapsed: 00:00:00.88
# Mc/sec: 212.40
//
Query:       MMETSP0890-20130614|10557_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-45  152.8   0.0    9.9e-45  152.2   0.0    1.2  1  PF14124.1 Domain of unknown function (DUF4291)


Domain annotation for each model (and alignments):
>> PF14124.1  Domain of unknown function (DUF4291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   7.3e-49   9.9e-45       7     175 ..      65     235 ..      60     241 .. 0.87

  Alignments for each domain:
  == domain 1    score: 152.2 bits;  conditional E-value: 7.3e-49
    PF14124.1   7 ydeetitvYqAynseiaeaavkaqrfvesp.fkteRmtWiKpsflWmmyRsgyatkknqeriLaikikregfeelLkkavlssykekeskseeewkkklkkskvrvQWDperdlklkkl.eyrsiQiGlkgelvkeyaeew.....ivkiedvtdlvreikkllkereleeakkll 175
                  + ee+i vYqAy+ eia++a ++q+f+ +p +kt+RmtWiKp+flWmmyRsg+a+k+nqe iL i++k + f+elL  + +++ +      e++     ++ + r+QWDp++ +++++   +r++Q+G+kge   +ya+       i++i d+t+l+re  ++l+  + +++k++l
  MMETSP0890-20130614|10557_1  65 NGEEAILVYQAYRREIAKHACEHQSFEFAPgYKTTRMTWIKPNFLWMMYRSGWASKHNQEMILGIWLKLSFFHELLIASKCTQRR-----GEADAGVGERNRPCRLQWDPDHFPDGSNHpYRRALQLGIKGEYAARYASADpyispILNIVDMTPLAREGYAILNLIKKDRKKAHL 235
                  56899***********************************************************************999999873.....3455666677889*************9994568**************98533333399***********99998877666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.85
# Mc/sec: 747.10
//
Query:       MMETSP0890-20130614|10575_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-24   84.7   0.0    1.2e-17   64.0   0.0    2.1  2  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
     0.0016   17.1   4.6     0.0032   16.1   3.2    1.4  1  PF04712.7  Radial spokehead-like protein
     0.0058   16.1   0.0      0.016   14.6   0.0    1.9  1  PF13847.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.071   12.5   3.8       0.54    9.6   2.8    2.0  2  PF03066.10 Nucleoplasmin
       0.27   11.1  10.5      0.052   13.4   3.9    2.1  2  PF11081.3  Protein of unknown function (DUF2890)


Domain annotation for each model (and alignments):
>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   4.3e-21   1.2e-17       4     117 ..      39     158 ..      36     178 .. 0.90
   2 !   18.5   0.0   3.6e-07   0.00099     142     208 ..     222     295 ..     205     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 4.3e-21
                  HHHHHHHHH--.---HHHHHHHHHS-GGGGS-GGGGGGTTSSS-EE----.....-EE--HHHHHHHHHHTT--T.T-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHH CS
   PF01135.14   4 ealieelkkkgviksdkvaealeevdReefvpesfkekaYedaplsigyn.....atiSaphmvalalellelkk.garvLevGsGsGyltavlarlvgekgrvvsierikelveeakrn 117
                   al + l+k+g i+s++va+a++ vdR+ f+p+s  ++a++dapl+   +     +  Sap++ a+ale lel++ g + L++GsG+Gy +a+ a+++g++     +e +  lv++ + +
  MMETSP0890-20130614|10575_1  39 AALTSMLQKRGSIQSPQVAKAFRRVDRSAFLPKSSGTSAWDDAPLRAWDDdaqcvVHLSAPSIYATALEALELNEsGISFLNIGSGAGYFSALSATILGKNSVHHCVEISSPLVARCRST 158
                  678999***************************************9877677787899**************875389***********************9888999999998887765 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 3.6e-07
                  -BSEEEESSB-SS--HHHHHT.B-----EEEEE-.....--SEEEEEEEE--...--EEEEEEEEE---B---- CS
   PF01135.14 142 PYdaihvgaaapeiPealidQ.LkeGGrlvvPvge....eeeQvlklvdkka..dgkvvikkleevrfvpltdk 208
                   +d+i+vga+a      l+   Lk+GG++v P ++     + Q l ++ k +  d++++i++l++v f pl+ +
  MMETSP0890-20130614|10575_1 222 HFDRIYVGAGARASDAHLLSRlLKPGGIIVGPFERdnssFGAQSLLKATKIGfhDSSFQIEELMAVQFAPLARR 295
                  59***********9999887637***********96322246999999997444899*************9865 PP

>> PF04712.7  Radial spokehead-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.2   1.2e-06    0.0032     346     398 ..     300     355 ..     275     374 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-06
    PF04712.7 346 qGRvtwvneekkeeeeeeeeeedeeeeeeeeee....epEegpelLtpiseDaelee 398
                  qGR+  + + +++eeee eeee+eeeee+ ee+    e  ++++ L++is+++e+  
  MMETSP0890-20130614|10575_1 300 QGRLIEMVPAENTEEEE-EEEEEEEEEENVEESttpiEADNEQPPLQSISQEEEIRS 355
                  89998876666666666.44444444444444458899999**********998865 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.9e-06     0.016       2      67 ..     113     183 ..     112     326 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.9e-06
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke.....raqklgfenveFiqgdieele 67 
                  +sgi++l +G+G+Gy++   a  lg+++  ++++is   +++++       a      n eF++ d  + e
  MMETSP0890-20130614|10575_1 113 ESGISFLNIGSGAGYFSALSATILGKNSVHHCVEISSPLVARCRStfdsiSAVYSDSSNSEFEADDKDQTE 183
                  6899****************************************955544444555557777766666644 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   5.1e+02     117     137 ..     149     185 ..      92     192 .. 0.57
   2 ?    9.6   2.8    0.0002      0.54     119     141 ..     312     331 ..     269     342 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.19
                  .................----XXXXXXXXXXXXXXXX CS
   PF03066.10 117 e................eddeedeeeeddeedddeee 137
                                    +d +++e e d+ d+ e++
  MMETSP0890-20130614|10575_1 149 SplvarcrstfdsisavYSDSSNSEFEADDKDQTEKT 185
                  0555555555555555545555555555555555544 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0002
                  ---XXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 119 ddeedeeeeddeedddeeeeeee 141
                   +ee+ee   +ee+++ee+ ee 
  MMETSP0890-20130614|10575_1 312 TEEEEEE---EEEEEEEENVEES 331
                  1111111...1222222222222 PP

>> PF11081.3  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.7   1.9e+03      56     100 ..      25      70 ..      19      90 .. 0.60
   2 ?   13.4   3.9   1.9e-05     0.052      33      86 ..     308     361 ..     285     374 .. 0.62

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.7
    PF11081.3  56 eeetaakskapssssksssqetksapprpaa.rrpsrRWdetgraa 100
                  +ee+a+++ + s++++ +s+ +k    + ++  ++ rR d     +
  MMETSP0890-20130614|10575_1  25 DEEVASNNSPCSQAAALTSMLQKRGSIQSPQvAKAFRRVDRSAFLP 70 
                  5666666444444444444444444444444478888888766554 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.9e-05
    PF11081.3  33 eeeeeledwedSldeedeeaeeveeetaakskapssssk...sssqetksapprpaa 86 
                  ++e+++e++    +ee+ee+e+vee t++  +a++++ +    s++e++  ppr+++
  MMETSP0890-20130614|10575_1 308 PAENTEEEE--EEEEEEEEEENVEESTTPI-EADNEQPPlqsISQEEEIRSPPREPR 361
                  334444433..2356667888888888777.33333333010444566777888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       842  (0.0615857); expected 273.4 (0.02)
Passed bias filter:                      579  (0.0423493); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.41s 00:00:01.42 Elapsed: 00:00:00.75
# Mc/sec: 1559.23
//
Query:       MMETSP0890-20130614|10573_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     5e-130  433.7   0.2   5.6e-130  433.6   0.1    1.0  1  PF00171.17 Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.14   12.4   2.2        0.3   11.4   1.5    1.6  1  PF09011.5  Domain of unknown function (DUF1898)
       0.16   11.4   0.7       0.33   10.5   0.5    1.5  1  PF13376.1  Bacteriocin-protection, YdeI or OmpD-Associated


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.6   0.1  1.2e-133  5.6e-130       6     461 ..       5     458 ..       1     459 [. 0.96

  Alignments for each domain:
  == domain 1    score: 433.6 bits;  conditional E-value: 1.2e-133
                  -SEEEEEETTTEEEEEEEE---HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHH.HHHHHHHHHHHH.HHHHHHC-CCEEEECTTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHHTS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TTS-HHH.HHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--EE.EE---ETTEEEEEEEES--TTSGGGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTTS-B---TTTEE--BSSHHHHHHTEEEEE CS
   PF00171.17   6 setievinPatgeviakvaaataedvdaavaaAkaafkawaklpaeeRaeilrkaadlleerrdelaelevletGkplaeara.evaeaidvlryy.agaaeklegevlpssegkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleeaglPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVledaDldk.aveaivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGeeekaglekgyfvePtvladvtpdmriaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaealpfgGvkqSglGreggkegleeytevkt 461
                  ++t+++inPatgev+a+++ +t+e+v+aav++Ak+a+++w+ l+ eeR+++l kaa+++++  +elael+++e+Gkpl       + ea  +  ++ a++a+kle evl  +++ +a ++r  lGv ++itPWN P ++++w ++pal +GNtvvlKpse t+ + + l+++++   lP+gvlnvv g+gs vg+ l+ hpd++k+ ftGst++g+kia+aa+k+l +vtlE+GG+++ i l+ + ++   + ++ +g++ln+GQ+C  ++rl+Vhe+ +d+++++l e a ++k+G++l+e t lGPl +k q++ v +++e+ak++g+k++ GG  ++  + kgyf++ t+++++++ ++++ +E FGPV+++i++k+++ea++ aNd++ +L a+v+++dl++a+ v +rl aG+vwiN++ + ++   pfgGvk+Sg+G e+g+ gl   t +k 
  MMETSP0890-20130614|10573_1   5 ASTVKSINPATGEVFAETKMSTQEEVNAAVQKAKEAYPKWSGLSDEERKSYLAKAAEAVKASTKELAELITKEQGKPLFPGGPgSLFEAGACSTWIeANLAHKLEPEVLVEDDTMRAELHRVSLGVFGIITPWNWPTIISTWCVIPALRTGNTVVLKPSEYTTQCVVELIKTINS-VLPEGVLNVVIGDGS-VGAMLTGHPDLAKIVFTGSTRTGKKIAEAASKSLARVTLECGGNDAGILLKGTKMEGpRAMDLFWGCMLNSGQTCAVIKRLYVHEDDVDRITNALDEIAGSMKMGNGLEEGTLLGPLSNKMQYDIVVDLVEDAKKNGGKIIRGG--SPMPDTKGYFFPVTIITGLDNGSKLVDNEQFGPVIVIISYKTIDEAVTKANDSKSALGASVWGDDLKEAQAVGSRLVAGTVWINQHAALHPLV-PFGGVKDSGYGVESGALGLLGTTATKV 458
                  3679**************************************************************************9777768888877777763556888*****99988*************************************************************9.7***********995.9*****************************************************97527899**********************************************************************************..678899********************************************************************************8888888.*******************99999986 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   6.6e-05       0.3      36      66 ..      36      66 ..      17      70 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.6e-05
    PF09011.5 36 vsklcsekWkalseeeKekYeekAkedkkry 66
                   k++ +kW  ls+ee++ Y  kA+e  k+ 
  MMETSP0890-20130614|10573_1 36 KAKEAYPKWSGLSDEERKSYLAKAAEAVKAS 66
                 4588899*************99999875554 PP

>> PF13376.1  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   7.2e-05      0.33       5      49 ..      25      69 ..      21      74 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.2e-05
    PF13376.1  5 evpedlqaaLaanpaAkafFealtpsyrkailrwiqsaKrpeTRa 49
                    e++ aa ++ ++A+  + +l++ +rk++l    +a ++ T++
  MMETSP0890-20130614|10573_1 25 STQEEVNAAVQKAKEAYPKWSGLSDEERKSYLAKAAEAVKASTKE 69
                 567899***************************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.70
# Mc/sec: 1588.44
//
Query:       MMETSP0890-20130614|10644_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   44.1   8.1    2.5e-11   43.2   5.6    1.5  1  PF00170.16 bZIP transcription factor
    4.5e-10   39.0  14.8    9.1e-10   38.1  10.2    1.5  1  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
       0.18   12.0   3.1       0.48   10.6   2.1    1.9  1  PF06156.8  Protein of unknown function (DUF972)
        1.1    9.1  11.1       0.74    9.7   6.4    1.9  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   5.6   7.3e-15   2.5e-11       2      56 ..      47     101 ..      46     108 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 7.3e-15
                  XXXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHH CS
   PF00170.16   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                  +e +r +r++ NR AA++sR+RKka+ieeL++ v  L+ eN +L++++  ++++ 
  MMETSP0890-20130614|10644_1  47 PETRRRKRLELNRKAAQESRARKKARIEELQRNVVFLSRENAELREQNYLMRQML 101
                  6789*******************************************99999886 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1  10.2   2.7e-13   9.1e-10       2      52 ..      47      98 ..      46     100 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.7e-13
   PF07716.10  2 ddeyrerRr.rNreAArrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52
                 ++ +r++R   Nr AA+ sR +kka+ eel++ v +L++eNa+Lr+++  ++
  MMETSP0890-20130614|10644_1 47 PETRRRKRLeLNRKAAQESRARKKARIEELQRNVVFLSRENAELREQNYLMR 98
                 67899*****************************************997766 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.1   0.00014      0.48      21      76 ..      70     125 ..      51     153 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
    PF06156.8  21 leeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkkkklgegkd 76 
                   + +eel++++  l  enael+ +n  +r+ l  ++++++++e++   ++  e +d
  MMETSP0890-20130614|10644_1  70 KARIEELQRNVVFLSRENAELREQNYLMRQMLGAVDDDDNDDEHEVGGNTATEKND 125
                  57899*****************************9996555555554444444443 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.4   0.00022      0.74      45     126 ..      54     137 ..      45     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00022
    PF13094.1  45 lLqeeirreeaelekdeekleeLeknakalererkeesknl...hpvlqelesevleenalaekedlklseknleptl.deellel 126
                   L+ + ++ ++++++ + ++eeL++n+  l re++e+++++   +++l   +++ +++  ++  +   ++ekn+e +   +++  +
  MMETSP0890-20130614|10644_1  54 RLELNRKAAQESRARKKARIEELQRNVVFLSRENAELREQNylmRQMLGAVDDDDNDDEHEVGGNT--ATEKNDEENDmTNDIVHI 137
                  57778889999*****************************88888888888888877777777666..555555544425555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1168  (0.0854301); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.93
# Mc/sec: 636.45
//
Query:       MMETSP0890-20130614|10720_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.47s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 280.82
//
Query:       MMETSP0890-20130614|10734_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.0   1.5       0.14   11.8   0.0    1.8  2  PF12801.2 4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> PF12801.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05      0.14      19      32 ..     138     151 ..     123     152 .. 0.87
   2 ?   -3.1   0.2      0.47   6.5e+03       6      14 ..     159     167 ..     156     172 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.1e-05
    PF12801.2  19 fGRvfCgWlCPfGa 32 
                  fGR+ Cg +CP +a
  MMETSP0890-20130614|10734_1 138 FGRIVCGDICPITA 151
                  9**********986 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.47
    PF12801.2   6 lilfigill 14 
                  l+l+ ++++
  MMETSP0890-20130614|10734_1 159 LMLIGCLAV 167
                  333334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.76
# Mc/sec: 548.64
//
Query:       MMETSP0890-20130614|10748_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-12   46.4   0.1    2.7e-12   46.3   0.1    1.0  1  PF13424.1  Tetratricopeptide repeat
    1.8e-11   43.3   0.3    4.8e-10   38.8   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    4.8e-07   29.0   0.1    5.8e-07   28.7   0.1    1.2  1  PF00515.23 Tetratricopeptide repeat
    1.4e-06   27.5   0.2    1.9e-06   27.2   0.1    1.2  1  PF07719.12 Tetratricopeptide repeat
      2e-05   23.9   0.1    2.6e-05   23.5   0.0    1.2  1  PF13176.1  Tetratricopeptide repeat
    5.8e-05   22.5   0.1    6.9e-05   22.2   0.0    1.1  1  PF13414.1  TPR repeat
     0.0015   18.0   0.1      0.002   17.6   0.1    1.2  1  PF13181.1  Tetratricopeptide repeat
     0.0038   17.7   0.1     0.0042   17.5   0.0    1.2  1  PF13432.1  Tetratricopeptide repeat
     0.0065   16.8   0.1      0.011   16.2   0.1    1.4  1  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.053   13.1   0.1      0.061   12.9   0.1    1.1  1  PF10975.3  Protein of unknown function (DUF2802)
      0.083   13.2   0.1       0.12   12.8   0.0    1.2  1  PF13174.1  Tetratricopeptide repeat
      0.093   12.7   0.0      0.093   12.7   0.0    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
       0.12   11.5   0.1       0.76    8.9   0.0    2.1  2  PF10516.4  SHNi-TPR


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.1   2.6e-15   2.7e-12      33      78 .]       3      49 ..       1      49 [. 0.94

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 2.6e-15
    PF13424.1 33 el.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                  + ++ lg+dh+++  +lnnla+ ++++ +ydeA++++e+Al+i+e+
  MMETSP0890-20130614|10748_1  3 RIrQENLGPDHLEVSQSLNNLAQSLRHQAKYDEAKPLFERALKIREE 49
                 676899**************************************985 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.08        85      31      40 ..       4      13 ..       2      15 .. 0.64
   2 !   38.8   0.0   4.6e-13   4.8e-10       1      37 [.      16      52 ..      16      54 .] 0.95

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.08
    PF13374.1 31 irrrllGddH 40
                 ir++ lG+dH
  MMETSP0890-20130614|10748_1  4 IRQENLGPDH 13
                 444445**** PP

  == domain 2    score: 38.8 bits;  conditional E-value: 4.6e-13
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllG 37
                 ++ +lnnLA  lr + +y+eA +l+e+al ir++ lG
  MMETSP0890-20130614|10748_1 16 VSQSLNNLAQSLRHQAKYDEAKPLFERALKIREEMLG 52
                 5789*******************************99 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   5.5e-10   5.8e-07       2      32 ..      18      48 ..      17      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 5.5e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                 ++l+nl++ ++++ kydeA   +e+AL++++
  MMETSP0890-20130614|10748_1 18 QSLNNLAQSLRHQAKYDEAKPLFERALKIRE 48
                 579*************************986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.8e-09   1.9e-06       3      31 ..      19      47 ..      17      49 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.8e-09
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAleld 31
                  l+nl+++++++ +y+eA+ +fe+Al++ 
  MMETSP0890-20130614|10748_1 19 SLNNLAQSLRHQAKYDEAKPLFERALKIR 47
                 699************************86 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.5e-08   2.6e-05       1      33 [.      19      51 ..      19      54 .] 0.91

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.5e-08
    PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpl 33
                 +l+nLa+  + + +y++A  l+eraL+++++ l
  MMETSP0890-20130614|10748_1 19 SLNNLAQSLRHQAKYDEAKPLFERALKIREEML 51
                 79**********************999998765 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.6e-08   6.9e-05       2      34 ..      16      48 ..      11      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.6e-08
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldp 34
                 ++++l++l++ l ++ +ydeA  ++e+Al++++
  MMETSP0890-20130614|10748_1 16 VSQSLNNLAQSLRHQAKYDEAKPLFERALKIRE 48
                 578899999999999999999999999999975 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.9e-06     0.002       2      31 ..      18      47 ..      17      49 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.9e-06
                 --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelk 31
                 ++++nl++ +r   +yd+Ak  +e+al++ 
  MMETSP0890-20130614|10748_1 18 QSLNNLAQSLRHQAKYDEAKPLFERALKIR 47
                 5799************************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     4e-06    0.0042      31      60 ..      17      46 ..       3      50 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4e-06
    PF13432.1 31 aeallllaeallrlgrldeAaallraalal 60
                  + l +la++l ++ ++deA  l+++al++
  MMETSP0890-20130614|10748_1 17 SQSLNNLAQSLRHQAKYDEAKPLFERALKI 46
                 567778888888888888888888888765 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     1e-05     0.011       5      31 ..      21      47 ..      17      51 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-05
    PF13428.1  5 lalarallalGdpdeAiallrralala 31
                   la+ l+++  +deA  l++ral+  
  MMETSP0890-20130614|10748_1 21 NNLAQSLRHQAKYDEAKPLFERALKIR 47
                 579********************9865 PP

>> PF10975.3  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.8e-05     0.061       6      40 ..      12      46 ..       7      49 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.8e-05
    PF10975.3  6 rlqeleqklkqleerleeleqqdpesrlYsrAakl 40
                    e++q+l++l++ l++ ++ d++++l++rA+k+
  MMETSP0890-20130614|10748_1 12 DHLEVSQSLNNLAQSLRHQAKYDEAKPLFERALKI 46
                 557999***************************97 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011      0.12       5      28 ..      22      45 ..      19      47 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                 +la+s++ + ++deA+ ++er +k
  MMETSP0890-20130614|10748_1 22 NLAQSLRHQAKYDEAKPLFERALK 45
                 79*****977***********987 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.8e-05     0.093      27      57 ..      19      50 ..       5      54 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.8e-05
                 CHHHHHHHHHH---HHHHHHHHHC.TSHCHCB CS
    PF12895.2 27 ylyalAlclylngeykrAyellrk.leldsss 57
                 +l +lA++l ++++y++A  l+++ l+++++ 
  MMETSP0890-20130614|10748_1 19 SLNNLAQSLRHQAKYDEAKPLFERaLKIREEM 50
                 56678*************99998887777665 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.49   5.1e+02      28      38 .]       2      12 ..       2      12 .. 0.81
   2 ?    8.9   0.0   0.00073      0.76      16      35 ..      32      51 ..      29      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.49
    PF10516.4 28 LeLreqllppe 38
                 L +r+++l p+
  MMETSP0890-20130614|10748_1  2 LRIRQENLGPD 12
                 67999999875 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00073
    PF10516.4 16 nFpqAveDlrkaLeLreqll 35
                 ++++A   +++aL++re+ l
  MMETSP0890-20130614|10748_1 32 KYDEAKPLFERALKIREEML 51
                 678888889********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 172.54
//
Query:       MMETSP0890-20130614|10823_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-32  111.4   3.4    8.1e-18   64.4   0.1    2.7  3  PF12796.2  Ankyrin repeats (3 copies)
    1.3e-17   62.4   2.6    1.3e-06   27.7   0.0    4.9  5  PF00023.25 Ankyrin repeat
    1.7e-16   58.5   3.0    0.00029   20.6   0.0    5.2  5  PF13606.1  Ankyrin repeat
      1e-14   54.4   3.2    5.7e-07   29.7   0.0    4.2  4  PF13637.1  Ankyrin repeats (many copies)
    3.9e-13   49.0   0.2    1.7e-05   24.7   0.0    4.2  4  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   7.5e-16     2e-12      14      89 .]     210     291 ..     204     291 .. 0.88
   2 !   64.4   0.1     3e-21   8.1e-18       1      89 []     230     325 ..     230     325 .. 0.92
   3 !   14.8   0.0   8.9e-06     0.024      33      85 ..     335     394 ..     326     397 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 7.5e-16
    PF12796.2  14 klLlekgadvdlget......pLhlAaeagnleivklLleagadvnakd..kegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                  + Ll+ +a+v    +      +L  A+e+++++ v +L+e+g dvn kd  ++++t+L++Av+ g++e++++L+e+gad+++rd
  MMETSP0890-20130614|10823_1 210 DALLNPKANVPK--EagadirVLLRACEKNDVAKVAALIESGIDVNGKDprMDNYTALFIAVEDGDTEIADMLIEAGADIEARD 291
                  567777777773..3344455***********************************************************9997 PP

  == domain 2    score: 64.4 bits;  conditional E-value: 3e-21
    PF12796.2   1 LhlAaengnlelvklLlekgadvdl......getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelv.klLlekgadvnlrd 89 
                  L  A+e++++  v  L+e+g dv+       + t+L++A+e g++ei+++L+eagad++a+d +g+tpL++A+ +g +++v +l++++ a++n+rd
  MMETSP0890-20130614|10823_1 230 LLRACEKNDVAKVAALIESGIDVNGkdprmdNYTALFIAVEDGDTEIADMLIEAGADIEARDGKGRTPLFAAAVAGVAKMVaHLIIQHHANPNVRD 325
                  5679********************8888876667*******************************************998836666*******997 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 8.9e-06
    PF12796.2  33 AaeagnleivklLle.......agadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                  +++  +++++++Ll+          d+nakd  g ++L +A   g+++++++L ++ga+ 
  MMETSP0890-20130614|10823_1 335 CCALSQINAARALLDasnqrgiWSIDINAKDPCGLNALDFAKARGNQDVIDFLSQRGANE 394
                  345577899999999777766666788******************************985 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011        31       6      32 ..     230     256 ..     229     257 .. 0.88
   2 !   27.7   0.0   4.8e-10   1.3e-06       1      32 [.     260     291 ..     260     292 .. 0.96
   3 !   17.4   0.0   9.1e-07    0.0025       2      32 ..     294     325 ..     293     326 .. 0.85
   4 ?   -3.1   0.0       2.9   7.9e+03      14      23 ..     340     349 ..     333     353 .. 0.67
   5 !    9.2   0.0   0.00035      0.96       2      27 ..     368     393 ..     367     395 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.011
                  HHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   6 LHlAalrgnlevvklLlsqGAdlnaqd 32 
                  L  A++++++  v  L++ G d+n +d
  MMETSP0890-20130614|10823_1 230 LLRACEKNDVAKVAALIESGIDVNGKD 256
                  567999999**************9665 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 4.8e-10
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  d +T+L +A++ g++e++ +L+++GAd+ a+d
  MMETSP0890-20130614|10823_1 260 DNYTALFIAVEDGDTEIADMLIEAGADIEARD 291
                  689***************************98 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 9.1e-07
                  SCBHHHHHHHTTHHHHHHHHHH.TTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLls.qGAdlnaqd 32 
                  G+TPL  Aa  g +++v  L+  + A++n++d
  MMETSP0890-20130614|10823_1 294 GRTPLFAAAVAGVAKMVAHLIIqHHANPNVRD 325
                  9***********66666666666*******99 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 2.9
                  HHHHHHHHHH CS
   PF00023.25  14 nlevvklLls 23 
                  +++ ++ Ll+
  MMETSP0890-20130614|10823_1 340 QINAARALLD 349
                  7788888988 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.00035
                  SCBHHHHHHHTTHHHHHHHHHHTTSS CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAd 27 
                  G  +L  A  rgn +v+ +L ++GA+
  MMETSP0890-20130614|10823_1 368 GLNALDFAKARGNQDVIDFLSQRGAN 393
                  889999*******************8 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05     0.039       5      29 ..     229     253 ..     225     254 .. 0.94
   2 !   20.6   0.0     1e-07   0.00029       2      29 ..     261     288 ..     260     289 .. 0.94
   3 !   11.9   0.0   6.9e-05      0.19       2      29 ..     294     322 ..     293     323 .. 0.85
   4 ?   -0.2   0.1      0.56   1.5e+03       8      24 ..     333     350 ..     330     363 .. 0.65
   5 !    7.5   0.0    0.0018         5       2      27 ..     368     393 ..     367     395 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    PF13606.1   5 pLhlAasngrielveaLlengadin 29 
                  +L  A++++ ++ v aL+e+g+d+n
  MMETSP0890-20130614|10823_1 229 VLLRACEKNDVAKVAALIESGIDVN 253
                  7999********************9 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1e-07
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  ++T+L++A++ g +e+++ L+e+gadi 
  MMETSP0890-20130614|10823_1 261 NYTALFIAVEDGDTEIADMLIEAGADIE 288
                  79************************96 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 6.9e-05
    PF13606.1   2 GnTpLhlAasngrielveaLl.engadin 29 
                  G+TpL+ Aa  g  ++v +L+ +++a++n
  MMETSP0890-20130614|10823_1 294 GRTPLFAAAVAGVAKMVAHLIiQHHANPN 322
                  9***********88887666659****99 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.56
    PF13606.1   8 lAas.ngrielveaLlen 24 
                  +A+    +i++++aLl++
  MMETSP0890-20130614|10823_1 333 WACCaLSQINAARALLDA 350
                  565525689999999994 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.0018
    PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                  G ++L+ A  +g+ +++++L ++ga+
  MMETSP0890-20130614|10823_1 368 GLNALDFAKARGNQDVIDFLSQRGAN 393
                  77888888889*************97 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.9e-06     0.019       4      42 ..     229     269 ..     228     269 .. 0.91
   2 !   29.7   0.0   2.1e-10   5.7e-07       2      44 ..     262     304 ..     261     309 .. 0.94
   3 !    8.1   0.3    0.0013       3.6       5      54 .]     298     348 ..     298     348 .. 0.89
   4 !   10.2   0.5   0.00028      0.76       5      53 ..     332     387 ..     328     389 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.9e-06
    PF13637.1   4 aLhyaaisgrlelvklLlekgidinrt.desGn.taLhiAa 42 
                  +L +a+ ++++  v+ L+e+gid+n + ++  n taL iA+
  MMETSP0890-20130614|10823_1 229 VLLRACEKNDVAKVAALIESGIDVNGKdPRMDNyTALFIAV 269
                  7889***********************98887769***997 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 2.1e-10
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalr 44 
                  +taL+ a+ +g++e++  L+e g+di ++d++G+t+L  Aa +
  MMETSP0890-20130614|10823_1 262 YTALFIAVEDGDTEIADMLIEAGADIEARDGKGRTPLFAAAVA 304
                  79*************************************9965 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0013
    PF13637.1   5 LhyaaisgrlelvklLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  L+ aa +g  ++v++L+ ++ +++n +d+ +   +  ++   +i++++ Ll
  MMETSP0890-20130614|10823_1 298 LFAAAVAGVAKMVAHLIiQHHANPNVRDSAQHHVFWACCALSQINAARALL 348
                  7899999999999977769**********9999999999999999999887 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00028
    PF13637.1   5 LhyaaisgrlelvklLl....ekg...idinrtdesGntaLhiAalrgnieilklL 53 
                  +  +++ + + +++ Ll    ++g   idin++d +G +aL++A  rgn +++ +L
  MMETSP0890-20130614|10823_1 332 FWACCALSQINAARALLdasnQRGiwsIDINAKDPCGLNALDFAKARGNQDVIDFL 387
                  56678899999999999655444576677***************999997776665 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.042   1.1e+02      19      49 ..     229     259 ..     221     261 .. 0.88
   2 !   24.7   0.0   6.2e-09   1.7e-05      16      56 .]     261     301 ..     258     301 .. 0.93
   3 ?    2.5   0.0      0.06   1.6e+02      23      47 ..     301     326 ..     299     334 .. 0.82
   4 !   14.3   0.0   1.2e-05     0.033       7      54 ..     359     406 ..     356     407 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.042
    PF13857.1  19 pLhlAakggalevvrlLlapgadlnlrdsdg 49 
                  +L  A++++++  v  L++ g d n +d ++
  MMETSP0890-20130614|10823_1 229 VLLRACEKNDVAKVAALIESGIDVNGKDPRM 259
                  7899*********************999876 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 6.2e-09
    PF13857.1  16 gntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  ++t+L +A++ g++e++++L+++gad+ +rd  g+t+l  A
  MMETSP0890-20130614|10823_1 261 NYTALFIAVEDGDTEIADMLIEAGADIEARDGKGRTPLFAA 301
                  459**********************************9765 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.06
    PF13857.1  23 AakggalevvrlLl.apgadlnlrds 47 
                  Aa +g + +v  L+ ++ a++n+rds
  MMETSP0890-20130614|10823_1 301 AAVAGVAKMVAHLIiQHHANPNVRDS 326
                  444777888889999*********98 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 1.2e-05
    PF13857.1   7 advnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                  +d+na d++g ++L +A  +g+++v+++L ++ga+     +  l+a++
  MMETSP0890-20130614|10823_1 359 IDINAKDPCGLNALDFAKARGNQDVIDFLSQRGANESRSGNVKLSAVQ 406
                  799***************************999998777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       937  (0.0685342); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.92
# Mc/sec: 1088.78
//
Query:       MMETSP0890-20130614|10857_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-75  253.2   0.0    2.1e-75  253.1   0.0    1.0  1  PF00069.20 Protein kinase domain
      2e-33  115.4   0.0    2.6e-33  115.1   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.013   15.1   0.4       0.04   13.5   0.0    1.7  2  PF01636.18 Phosphotransferase enzyme family
      0.091   12.1   0.0       0.14   11.5   0.0    1.3  1  PF01633.15 Choline/ethanolamine kinase
       0.15   11.0   0.0       0.28   10.1   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.0   7.8e-79   2.1e-75       1     260 []       4     287 ..       4     287 .. 0.98

  Alignments for each domain:
  == domain 1    score: 253.1 bits;  conditional E-value: 7.8e-79
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH........................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks........................eelkdlikkllekdpakRltaeeilkhpwl 260
                  y+ lek+G+G++G+Vyka++k tg  vA+K+++ ++e++    ta+rE+++lk+l+Hpniv+l++v++++++l lv+e++++ dl+++l   e  l+ + +k++++q+l+g++++H ++++HrDLKp N+L++++g+lk+aDFGla+ +  + +++t+ v+t +Y+AP+vl++++ y+++vD+Ws+G+i++e+++g+++f+g+se+dql +i + l+++  +++p  ++ +                        +   dl++++l++dp+kR++a++++kh ++
  MMETSP0890-20130614|10857_1   4 YQRLEKIGEGTYGVVYKARDKVTGGVVALKKIRLDTEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQ-DLKKYLDvCESGLEATILKSFLYQLLNGVAFCHMHRVLHRDLKPGNLLINREGKLKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRTYSTPVDIWSVGCIFAEMANGRPLFNGSSETDQLLKIFRLLGTPDAREWPALTELPewkpqlhdpaypprslatiapnldPLGLDLLSRMLRYDPTKRSSAADAMKHAYF 287
                  7899****************************************************************************99.******988999**********************************************************************************************************************************9988879**********************999*************************997 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   9.4e-37   2.6e-33       4     204 ..       7     200 ..       4     223 .. 0.88

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 9.4e-37
                  EEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH.HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-G CS
   PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee.keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlges 204
                   +k+GeG++G V++++ k     +   Va+K+++ ++e+e   +  ++e++++k+l+hpniv+l+ v+ +e++l +v+e++++ dL+++L    ++ l+   l +f +q+ +G+++ + ++++HrdL   N L+++e + k++DfGLar        ++ +++ + + + ap++l+ ++ +++  D+Ws G++  E+++ g+ 
  MMETSP0890-20130614|10857_1   7 LEKIGEGTYGVVYKARDK----VTGGVVALKKIRLDTEDEGiPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQ-DLKKYLDVC-ESGLEATILKSFLYQLLNGVAFCHMHRVLHRDLKPGNLLINREGKLKLADFGLARAF--GIPVRSYTHEVVTLWYRAPDVLMGSRtYSTPVDIWSVGCIFAEMAN-GRP 200
                  689************999....89999******76666555378899**********************************87.9*******9.********************************************************9..44456666677777777****998766****************987.544 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05      0.04     167     196 ..     121     149 ..     118     151 .. 0.85
   2 ?   -2.7   0.1       1.2   3.4e+03     124     154 ..     227     250 ..     210     281 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
                  EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
   PF01636.18 167 vllHgDlhpgNllvdpddgrvgviDfedag 196
                  ++lH+Dl+pgNll++ ++g++ + Df++a+
  MMETSP0890-20130614|10857_1 121 RVLHRDLKPGNLLIN-REGKLKLADFGLAR 149
                  689************.77777789999886 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHHHHCTHHHHHHHHHHHHH CS
   PF01636.18 124 tllrllesataalvasellelleeleervla 154
                    l  l++++++l ++++++       r la
  MMETSP0890-20130614|10857_1 227 PALTELPEWKPQLHDPAYPP-------RSLA 250
                  45566666666666666666.......1223 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.1e-05      0.14     128     169 ..      99     145 ..      68     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.1e-05
                  HHHHHHHHHTT----EEEE-S......------EEE-------EE--- CS
   PF01633.15 128 eleeleklleekespvvfCHn......DlqegNillnkeekklvlIDF 169
                  e++ l+++l +  ++v fCH       Dl +gN+l+ + e+kl+l DF
  MMETSP0890-20130614|10857_1  99 EATILKSFLYQLLNGVAFCHMhrvlhrDLKPGNLLI-NREGKLKLADF 145
                  555566777788888999974444444*********.999*******9 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001      0.28      57     165 ..      47     145 ..      42     154 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
    PF06293.9  57 rsvrEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDl 165
                  +++rE++llk+L+   +  ++ v   +      ++  l+ e l+  qdL+++l   ++ l+ ++ +  l ++   +a  h   v H+dl + n+l++ e+   k+ l D+
  MMETSP0890-20130614|10857_1  47 TAIREISLLKELQHPNIVRLYDVVHTE------RKLTLVFEFLD--QDLKKYLDVCESgLEATILKSFLYQLLNGVAFCHMHRVLHRDLKPGNLLINREG---KLKLADF 145
                  788999999998887766666665555......56789999999..8*******98889999999999999999999999999***************99...8888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:01.05
# Mc/sec: 700.65
//
Query:       MMETSP0890-20130614|10885_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.062   13.0   0.0       0.14   11.9   0.0    1.6  1  PF00627.26 UBA/TS-N domain
       0.15   12.0   2.3       0.17   11.9   0.8    1.6  2  PF12363.3  Phage protein


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.14      15      34 ..      72      91 ..      68      94 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
                 -HHHHHHHHHHTTTSHHHHH CS
   PF00627.26 15 sreeakkALratnnnvErAv 34
                 +r++a++ALr +++++ +A 
  MMETSP0890-20130614|10885_1 72 GRDAAVHALRTHGGDLTAAL 91
                 79*************99986 PP

>> PF12363.3  Phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   2.5e-05      0.17      64     102 ..       4      42 ..       1      49 [. 0.85
   2 ?   -1.5   0.0      0.34   2.3e+03      43      61 ..      53      71 ..      50      82 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.5e-05
    PF12363.3  64 ahekknpsreeieeaieevieeeddieelfdevlkelkk 102
                   ++k+++s e++ +++ee   + d+++e+++ + + + +
  MMETSP0890-20130614|10885_1   4 EKQKESASLEKVTDYVEEETIDGDKTKEALSVIESTMSH 42 
                  5678999***********8888888*****999988865 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.34
    PF12363.3 43 lvngllegdpealvdvlea 61
                  v+++ ++d++ + + le+
  MMETSP0890-20130614|10885_1 53 TVVEIRQEDVDIIENELEV 71
                 5666777777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       885  (0.0647308); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.71
# Mc/sec: 327.39
//
Query:       MMETSP0890-20130614|10947_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-31  109.0   0.0      2e-31  108.0   0.0    1.4  1  PF06859.7  Bicoid-interacting protein 3 (Bin3)
      2e-12   46.8   0.0    4.3e-05   23.0   0.0    2.2  2  PF13847.1  Methyltransferase domain
    1.8e-11   44.4   0.0      4e-11   43.3   0.0    1.6  1  PF12847.2  Methyltransferase domain
    1.3e-10   41.1   0.0      2e-10   40.4   0.0    1.2  1  PF13489.1  Methyltransferase domain
    1.8e-10   41.0   0.0    5.6e-10   39.4   0.0    1.8  1  PF08242.7  Methyltransferase domain
    4.6e-10   39.7   0.0    3.8e-09   36.8   0.0    2.3  1  PF08241.7  Methyltransferase domain
    8.9e-08   32.3   0.0    2.8e-07   30.6   0.0    1.9  1  PF13649.1  Methyltransferase domain
     0.0002   20.8   0.0     0.0023   17.3   0.0    2.1  2  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    0.00029   20.7   0.0    0.00094   19.0   0.0    1.8  1  PF13659.1  Methyltransferase domain
    0.00077   18.5   0.3     0.0068   15.4   0.0    2.4  3  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0019   17.7   0.0     0.0027   17.2   0.0    1.3  1  PF13679.1  Methyltransferase domain
     0.0052   15.7   0.0      0.014   14.3   0.0    1.7  2  PF02390.12 Putative methyltransferase
  ------ inclusion threshold ------
      0.014   16.0   0.0      0.044   14.5   0.0    1.8  1  PF13578.1  Methyltransferase domain
      0.032   13.1   0.0        5.2    5.9   0.0    2.2  2  PF02353.15 Mycolic acid cyclopropane synthetase
      0.045   12.7   0.0      0.086   11.8   0.0    1.4  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)


Domain annotation for each model (and alignments):
>> PF06859.7  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   2.2e-34     2e-31       2     110 .]     194     307 ..     193     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 2.2e-34
    PF06859.7   2 fdvilalsvtkWvhlnwgdeGlkklfrkiyrllrpgGililePqafdsykkrk...klsetlkknyekiklkPdafeellleaevgfeevellavleses..kgfkrpilifkk 110
                  fd+i a+svtkW+hl +gdeGl ++fr++ + l+pgG++i+ePq + syk+++   + s t+++   +i+l+P++f ++l++++vgf +v+ l+ +++ +   gf+rpi+  +k
  MMETSP0890-20130614|10947_1 194 FDIICAFSVTKWIHLCHGDEGLLRFFRRVLNSLKPGGRFIVEPQDWRSYKRARtknRQSATIAHHIATIQLRPKDFPTILTSSDVGFDSVQFLGRPDDDNlpAGFRRPIYCAHK 307
                  9*************************************************9762225688999****************************888876544228******98765 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-07   9.8e-05       5      51 ..      94     139 ..      92     165 .. 0.84
   2 !   23.0   0.0   4.7e-08   4.3e-05      51     145 ..     165     270 ..     156     277 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.1e-07
    PF13847.1   5 ikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqkl 51 
                   kv D+GC +G+l+ +la +  +   + G+D +++ i+ A+ r  + 
  MMETSP0890-20130614|10947_1  94 AKVKDIGCNSGKLTMALA-RCFQPRYMLGVDLNATLIKDARSRIDRA 139
                  6889**************.7777777***************987665 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 4.7e-08
    PF13847.1  51 lgfe.nveFiqgdieelekl.le....esfDlvisnevl..naladpqkvlk....eiervlkpggrlivespsllaelp.eeleelsklkaevlegak.ign.qkeevk 145
                  l +  nv+F+++d+++ + + +     +sfD++++++v    +l++ ++ l     ++ + lkpggr+ive  + +++++ ++ ++ +    +++++++ +++  ++++ 
  MMETSP0890-20130614|10947_1 165 LPYPlNVSFEVEDFTASPASdVDisldHSFDIICAFSVTkwIHLCHGDEGLLrffrRVLNSLKPGGRFIVEPQD-WRSYKrARTKNRQS---ATIAHHIaTIQlRPKDFP 270
                  56777***********998888899***********99999777777777666777*************99888.44444244444444...445555443444555555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   4.4e-14     4e-11       2     111 ..      93     236 ..      92     237 .. 0.66

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 4.4e-14
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarena..........................ksldleeriellq................gda.keelsllerfDavllkgltldallal..deprrvlealpkllkpggrlvies 111
                  g+++ D+Gc++G l+ +lar ++   ++gvD+++  ++ ar ++                          +                            + a +++ sl++ fD++ +  +t +  l++  +   r+++++ + lkpggr+++e+
  MMETSP0890-20130614|10947_1  93 GAKVKDIGCNSGKLTMALARCFQPRYMLGVDLNATLIKDARSRIdraakeyahilkttrtridkdtseifD-----------PlpyplnvsfevedftaSPAsDVDISLDHSFDIICAFSVTKWIHLCHgdEGLLRFFRRVLNSLKPGGRFIVEP 236
                  67899***************888888***************999444444444444444444443333331...........033333333333333323333334444444999999667787777776544556699*************985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   2.2e-13     2e-10      16     140 ..      85     259 ..      69     274 .. 0.73

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2.2e-13
    PF13489.1  16 llarl.kpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk.......................................akqaqksqfdeedaae............pagkfdlivarevlehvp....d..peellrqiaellkpgGylllstpnaslasdeafakwdylvprgthi 140
                  ll++  ++g++v DiGc++G l+  la+++   ++ gvD++  +i+                                             ++++      +            ++++fd+i+a+ v+ +++    d  + +++r++ + lkpgG ++++ ++ + + + + ++ + ++ +  hi
  MMETSP0890-20130614|10947_1  85 LLEKSwFTGAKVKDIGCNSGKLTMALARCFQprYMLGVDLNATLIKDarsridraakeyahilkttrtridkdtseifdplpyplnV---SFEVE------DftaspasdvdisLDHSFDIICAFSVTKWIHlchgDegLLRFFRRVLNSLKPGGRFIVEPQDWRSYKRARTKNRQSATIA-HHI 259
                  555544899*****************9984445899*****9999998888888888888888887777666666666666663331...22222......0222333344444778***************88764668899999999**********9998776666666666666665.666 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   6.2e-13   5.6e-10       2      99 .]      98     232 ..      98     232 .. 0.95

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 6.2e-13
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...............................ssfDvvvasnvlhhl......kdirevldnirklLkpgGvl 99 
                  +iGc++G l++al+++++    +gvD+++  i+da+ ++ +  ++ ++ ++  ++ ++++ ++                               +sfD++ a++v  ++      + + ++++++ + LkpgG++
  MMETSP0890-20130614|10947_1  98 DIGCNSGKLTMALARCFQPRYMLGVDLNATLIKDARSRIDRAAKEYAHILKTTRTRIDKDTSEifdplpyplnvsfevedftaspasdvdisldHSFDIICAFSVTKWIhlchgdEGLLRFFRRVLNSLKPGGRF 232
                  8***************9999999********************999999999999977766669**************************************************99999**************86 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   4.1e-12   3.8e-09       2      95 .]      98     234 ..      97     234 .. 0.93

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 4.1e-12
    PF08241.7   2 dvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle...................................lvvadaeelpfe.dnsfDvvvssevlehl......edpekalkeiaRvLkpgGllvi 95 
                  d+Gc +g+l+ ala+  +++  +gvDl+++ ++ a+ r+++   e                                   +    a +++   d sfD++++++v +++      e + ++++ +   LkpgG++++
  MMETSP0890-20130614|10947_1  98 DIGCNSGKLTMALARCfQPRYMLGVDLNATLIKDARSRIDRAAKEyahilkttrtridkdtseifdplpyplnvsfevedFTASPASDVDISlDHSFDIICAFSVTKWIhlchgdEGLLRFFRRVLNSLKPGGRFIV 234
                  8*************************************9999998999***************************66666555669999888899***********999999999999****************996 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.1e-10   2.8e-07       3     101 .]      98     230 ..      96     230 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 3.1e-10
    PF13649.1   3 dlGCGsGrviraltraldkgpeqrvigvDiseealelak.........................erlsskgl........kvkfvqadaralpf......eegefdlvvc.....aglslehlspkqlealleeiarvlkpgG 101
                  d+GC sG  ++al+r++  +p  +++gvD+++  ++ a+                         +      +        +v+f ++d++a p        +++fd++       + + l+h  ++ l +++++++  lkpgG
  MMETSP0890-20130614|10947_1  98 DIGCNSGKLTMALARCF--QP-RYMLGVDLNATLIKDARsridraakeyahilkttrtridkdtSE-----IfdplpyplNVSFEVEDFTASPAsdvdisLDHSFDIICAfsvtkWIH-LCH-GDEGLLRFFRRVLNSLKPGG 230
                  9****************..55.9************7777666666677777777777666543322.....123345668*********99984344444888999998888888888.778.7899999***********99 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-06    0.0023      73     125 ..      92     143 ..      83     153 .. 0.89
   2 ?    0.8   0.0       0.3   2.7e+02     159     175 ..     222     238 ..     219     263 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.6e-06
                  TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--S CS
   PF01135.14  73 kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlen 125
                   ga+v ++G+ sG lt  lar ++++  +++++  + l+++a+ ++ + + e 
  MMETSP0890-20130614|10947_1  92 TGAKVKDIGCNSGKLTMALARCFQPRY-MLGVDLNATLIKDARSRIDRAAKEY 143
                  689***********************9.9*****************9988774 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.3
                  HHHTB-----EEEEE-. CS
   PF01135.14 159 lidQLkeGGrlvvPvge 175
                   ++ Lk+GGr++v  ++
  MMETSP0890-20130614|10947_1 222 VLNSLKPGGRFIVEPQD 238
                  5789*******985553 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     1e-06   0.00094       2     113 ..      94     234 ..      93     235 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1e-06
    PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl..........................aervrvrqgdlrdl.....aellragsfdlvvtnpPygpr......agaraalrdlydafleaaarllkpgGvlvl 113
                   +v d+gc sG ++ a+++   +  +lgv+l++  ++ a+ +++ra+                           + +v + + d+++      +    + sfd++++   +  +      +      ++ + +f+++ +  lkpgG++ +
  MMETSP0890-20130614|10947_1  94 AKVKDIGCNSGKLTMALARCFqPRYMLGVDLNATLIKDARSRIDRAAKeyahilkttrtridkdtseifdplpyPLNVSFEVEDFTASpasdvD-ISLDHSFDIICA---FSVTkwihlcH-----GDEGLLRFFRRVLNSLKPGGRFIV 234
                  6899***********9999989*********************999766666677666667777777776666644455555555444444422.344688999988...54432221112.....2347789*************9976 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.91   8.3e+02      81      98 ..      39      56 ..      12      65 .. 0.75
   2 !   15.4   0.0   7.5e-06    0.0068      47     118 ..      92     163 ..      87     184 .. 0.82
   3 ?   -0.5   0.0      0.53   4.9e+02     136     151 ..     216     234 ..     173     236 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.91
   PF01209.13 81 nenmLkvgekklkeegki 98
                  en+ k g+k+++eegk 
  MMETSP0890-20130614|10947_1 39 TENVEKRGKKRVREEGKE 56
                 567788999999999986 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 7.5e-06
   PF01209.13  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfed.dsfD 118
                  +gakv D+ + +g l+++l++  + ++ + ++D+n++++k ++ ++ + +k   + l++   +++ +  + fD
  MMETSP0890-20130614|10947_1  92 TGAKVKDIGCNSGKLTMALARCFQPRY-MLGVDLNATLIKDARSRIDRAAKEYAHILKTTRTRIDKDTsEIFD 163
                  6999*******************9997.789******************999888888877777665545555 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.53
   PF01209.13 136 Lkeayrv...lkpGGrlvv 151
                  L+  +rv   lkpGGr++v
  MMETSP0890-20130614|10947_1 216 LRFFRRVlnsLKPGGRFIV 234
                  455555533379***9976 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-06    0.0027      28      97 ..      95     166 ..      87     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.9e-06
    PF13679.1  28 tvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatp......k 97 
                  +v D+G+  g L+ +la ++    ++ +++g+d+++ l+++a+++ ++  k++++ l+++ + i+++t+      +
  MMETSP0890-20130614|10947_1  95 KVKDIGCNSGKLTMALARCF----QPRYMLGVDLNATLIKDARSRIDRAAKEYAHILKTTRTRIDKDTSeifdplP 166
                  688***************33....5778*************************88888888888777655555550 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-05     0.014      23      73 ..      96     146 ..      72     160 .. 0.85
   2 ?   -2.3   0.0       1.8   1.6e+03     119     148 ..     220     250 ..     217     276 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.5e-05
                  EEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH--TTB-- CS
   PF02390.12  23 vleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiealglkNlri 73 
                  v +IG+ sG++++alA  +    +lG++ + + ++ + ++i++   +  +i
  MMETSP0890-20130614|10947_1  96 VKDIGCNSGKLTMALARCFQPRYMLGVDLNATLIKDARSRIDRAAKEYAHI 146
                  679***********************************9999875544555 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.8
                  HHHHHHB-----EEEE.ES-HHHHHHHHHHH CS
   PF02390.12 119 kelarvLkkgGvlela.TDveeyleemlell 148
                    + + Lk+gG + +   D++ y +   +  
  MMETSP0890-20130614|10947_1 220 RRVLNSLKPGGRFIVEpQDWRSYKRARTKNR 250
                  5678899999976554268888876655554 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.8e-05     0.044       3     102 ..      99     233 ..      98     235 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.8e-05
    PF13578.1   3 iGvysGvstlvllqalkrngagrlysvdpdpg.........aeeaaalaee..agladrvrllkgdseealasla........................dgsiD.......llfiDgghaaeavladleallprlapggvvl 102
                  iG+ sG+ t++l+++++ +    +++vd +++         +    ++a+e  + l+++ + + +d +e ++ l+                        d s+D         +i  +h  e+ l++++ +l++l+pgg ++
  MMETSP0890-20130614|10947_1  99 IGCNSGKLTMALARCFQPRY---MLGVDLNATlikdarsriD----RAAKEyaHILKTTRTRIDKDTSEIFDPLPyplnvsfevedftaspasdvdislDHSFDiicafsvTKWIHLCHGDEGLLRFFRRVLNSLKPGGRFI 233
                  9***************9997...799***9988766543331....333324444555555555555444444444444444455555555444555555677777777777799999999*****************9776 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011       9.8      62     110 ..      92     141 ..      83     162 .. 0.84
   2 ?    5.9   0.0    0.0057       5.2     124     182 ..     190     252 ..     184     275 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.011
                  ---EEEE-------HHHHHHHHH--E.EE--BS-HHHHHHHHHHHHCS-S CS
   PF02353.15  62 pGmtlLdiGcGWGslvrraverydvk.vvglTlSkeqaklakqrvdeldl 110
                   G ++ diGc  G+l++  ++ ++ + ++g+ l +   k a+ r+d++  
  MMETSP0890-20130614|10947_1  92 TGAKVKDIGCNSGKLTMALARCFQPRyMLGVDLNATLIKDARSRIDRAAK 141
                  5999******************9987367999999999999999998764 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0057
                  -----SEEEE---GGGT....--TCHHHHHHHHHHCS-----EEEEEEE---HHHHCC----T CS
   PF02353.15 124 ldekvdrvvsvgafehv....gkenydtffkklkkllkedGllllhtitslhkkelaerglkl 182
                  ld+ +d + ++ ++  +    g e + +ff+++ + lk++G+++++    ++ k + +++ ++
  MMETSP0890-20130614|10947_1 190 LDHSFDIICAFSVTKWIhlchGDEGLLRFFRRVLNSLKPGGRFIVEPQDWRSYKRARTKNRQS 252
                  5678888887777766666889999******************99876666555555555554 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.4e-05     0.086     153     207 ..      84     139 ..      82     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.4e-05
    PF06325.8 153 ealeklvkegeevlDvGtGSGiLaiaaak.LgakkvvavDiDevAvkvakeNaelN 207
                   +lek   +g++v D+G+ SG L++a a+ +  + +++vD++   +k a++ +++ 
  MMETSP0890-20130614|10947_1  84 GLLEKSWFTGAKVKDIGCNSGKLTMALARcFQPRYMLGVDLNATLIKDARSRIDRA 139
                  5789999999****************776378999********9999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.69
# Mc/sec: 1229.44
//
Query:       MMETSP0890-20130614|10975_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-13   50.2   0.3    6.1e-13   48.5   0.2    2.0  1  PF00288.21 GHMP kinases N terminal domain
    1.5e-09   37.7   0.1    3.1e-08   33.6   0.0    2.7  2  PF08544.8  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> PF00288.21  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.2   8.9e-17   6.1e-13       2      67 .]     212     275 ..     211     275 .. 0.92

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 8.9e-17
                  EEEEESS-TT----HHHHHHHHHHHHHHHHTT-SS...HHHHHHHHHHHHHHTT----SHHHHHHHHCT CS
   PF00288.21   2 ivvesdiPigaGLGSSAalavalaaAllalyglpl...deeelaklaleaekaigkpsGidvaaavyGg 67 
                  +v++++iP ++GLGSS+a++va + A l l g++l    ee l++la ++e     +++++va+a+yGg
  MMETSP0890-20130614|10975_1 212 YVCTNRIPFARGLGSSSAAIVAGLIAGLVLTGHKLtmwGEESLLQLAAAIE-----GHPDNVAPAIYGG 275
                  57899***************************997556889**********.....6***********8 PP

>> PF08544.8  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.076   5.2e+02      31      56 ..      34      64 ..      18      89 .. 0.79
   2 !   33.6   0.0   4.5e-12   3.1e-08       9      68 ..     346     409 ..     339     428 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.076
    PF08544.8 31 ilspelrelleal.eelG....algaklsGa 56
                 i++p l ++ +++ + ++    +lga+++Ga
  MMETSP0890-20130614|10975_1 34 IVFPLLSRVFKKIdSNPDsrrlVLGAFITGA 64
                 66777777888885666688889*******9 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 4.5e-12
    PF08544.8   9 diellgellnenqlseplayvgilspelrellealeelGalgaklsGaGgGptvfalf..........kd 68 
                  d  + g + +++q   p  ++++++p+l  l+e + ++Ga + +lsGa  Gp+v+al+          ++
  MMETSP0890-20130614|10975_1 346 DNLRHGAMDRLHQP--P--RANKVYPHLYPLIESATKAGAAACFLSGA--GPAVVALTsgasgdifaqRE 409
                  55667888888899..9..*****************************..********666666666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.88
# Mc/sec: 1263.53
//
Query:       MMETSP0890-20130614|11066_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-20   70.8   0.0    6.5e-19   67.7   0.0    2.2  1  PF01167.13 Tub family
    1.1e-07   31.3   5.8    2.5e-07   30.2   4.0    1.6  1  PF13639.1  Ring finger domain
    0.00031   20.6   5.2    0.00077   19.3   3.6    1.7  1  PF12906.2  RING-variant domain
  ------ inclusion threshold ------
       0.24   11.1   6.2       0.55    9.9   4.3    1.7  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
       0.29   11.1   4.7        0.9    9.6   3.3    1.9  1  PF12678.2  RING-H2 zinc finger


Domain annotation for each model (and alignments):
>> PF01167.13  Tub family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   2.4e-22   6.5e-19     118     245 ..     403     522 ..     344     523 .. 0.72

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 2.4e-22
   PF01167.13 118 LGtrGPrrmtvilpsieasaeeeggrvpvqplneeqeslleeeq.kkkkesllvLknkaPrWneelqsyvLnfrGrvtvasvknfqlvaa.......sepdkivlqfGkvakdvftmDyryPlsalqafaiclssf 245
                  L ++G rr tv  +     a+    r + +p+         +++ ++ +++   L+ +aP+++  l+ ++L+f Gr   asv+nfq+v+a       +e+ + +l fG+ ++d f +D ++P+s + afai++ssf
  MMETSP0890-20130614|11066_1 403 LSSQGKRRCTVDYQ-----AN----RFANRPRA-------MHVDlDDGSSTSRKLRSRAPEYSPRLHGFCLDFFGRARLASVRNFQIVDAthdlvpgDEEARCLLLFGRWSSDCFHLDVKHPFSLVDAFAIAVSSF 522
                  44444444433221.....11....33333332.......222202233445679***********************************9*****99999**********************************9 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   4.0     9e-11   2.5e-07       2      46 .]     135     206 ..     134     206 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 9e-11
    PF13639.1   2 eCaiCldelse.geevv.rlpC........gHvfHeeCldewlrssn.................sCPlCrkp 46 
                  +C+iCl+ l+  +e+++ +lpC          + He+Cl++wl  +                  +CPlCr+p
  MMETSP0890-20130614|11066_1 135 TCVICLEALDVeDEQFIqTLPCscqarvdePALVHEHCLRSWLGACArraaraptegtettggvTCPLCRAP 206
                  7********66777777678897777777669***********554334455667777778889******86 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   3.6   2.8e-07   0.00077       1      47 []     136     203 ..     136     203 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.8e-07
                  ETTTTEE-----...--..-------T...TS--HHHHHHHHHH............HT-SB......-S-- CS
    PF12906.2   1 CriCleeeeese.plir..pCkCkGsl...klvHesCleeWlke............saktk......CelC 47 
                  C+iCle+ + ++ ++i+  pC+C+  +   +lvHe+Cl+ Wl              +   +      C lC
  MMETSP0890-20130614|11066_1 136 CVICLEALDVEDeQFIQtlPCSCQARVdepALVHEHCLRSWLGAcarraaraptegT---EttggvtCPLC 203
                  ******97765555654349****98744469**********987666655554331...02334446666 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.3    0.0002      0.55       4      45 ..     135     204 ..     132     205 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0002
    PF13923.1   4 sCpiCleelen......pviltpCg........HlyCkkCieqwleks................kkkCPiCr 45 
                  +C+iCle l           ++pC          l+++ C+ +wl                     +CP+Cr
  MMETSP0890-20130614|11066_1 135 TCVICLEALDVedeqfiQ--TLPCScqarvdepALVHEHCLRSWLGACarraaraptegtettgGVTCPLCR 204
                  8******99555576532..67887779999999999999999999866666666666665555556****9 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.3   0.00033       0.9      18      75 .]     130     204 ..     115     204 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00033
    PF12678.2  18 sed..nCaiCrnel..eelcpeckapgksdecpvawgeCgHaFHlhCiskWl.ktrk................tCPlcr 75 
                  ++d  +C+iC ++l  e+  +    p    +c+  +       H hC+++Wl  +++                tCPlcr
  MMETSP0890-20130614|11066_1 130 QQDcsTCVICLEALdvEDEQFIQTLPC---SCQARV-DEPALVHEHCLRSWLgACARraaraptegtettggvTCPLCR 204
                  344226*******93223333333333...344444.444455*********644445678899999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.82
# Mc/sec: 1545.94
//
Query:       MMETSP0890-20130614|11082_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   13.8   0.0      0.031   13.6   0.0    1.1  1  PF08534.5 Redoxin


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-06     0.031      89     137 ..       1      53 [.       1      64 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.3e-06
                  EE------HHHHHT..-EE-----....-EE--EEEEEE---EEEEEE-SSTT CS
    PF08534.5  89 vlsDesasfakalglrltedasag....irtpryavidedgkvvylevepepg 137
                  +++D++ ++++al+l+lt +  a      r +r+a++ ++g  +++ev ++ +
  MMETSP0890-20130614|11082_1   1 MIADPTSELTRALDLELTHPGPAKvlgpGRCKRFALLFDNGICKAVEVSESAD 53 
                  589**************999877799999************999999988763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       106  (0.00775307); expected 273.4 (0.02)
Passed bias filter:                      102  (0.0074605); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.55
# Mc/sec: 326.78
//
Query:       MMETSP0890-20130614|11137_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00018   21.6   1.2    0.00031   20.8   0.8    1.3  1  PF09537.5  Domain of unknown function (DUF2383)
     0.0044   15.6   9.8      0.052   12.0   3.2    2.1  2  PF12825.2  Domain of unknown function in PX-proteins (DUF3818)
  ------ inclusion threshold ------
      0.051   12.9   0.8      0.081   12.3   0.5    1.3  1  PF05335.8  Protein of unknown function (DUF745)
       0.09   10.4   4.5       0.11   10.1   3.1    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.15   12.0   2.4       0.39   10.7   1.7    1.6  1  PF07802.6  GCK domain
       0.43    9.9   5.2       0.77    9.0   3.3    1.8  1  PF05529.7  B-cell receptor-associated protein 31-like


Domain annotation for each model (and alignments):
>> PF09537.5  Domain of unknown function (DUF2383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.8   1.4e-07   0.00031       1      80 [.     158     236 ..     158     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.4e-07
    PF09537.5   1 etvnaLndLietlndgeegyekaaekvkdpelkalfqemaaereqaaaeLqaevralggepeesgslagklhrawidlks 80 
                  e++++L+  i++++ ++++ ek+ ++++d+e+ ++++e+a++ ++a+aeL+ e r++  + +++  + g  +  + +++s
  MMETSP0890-20130614|11137_1 158 EIIENLKNKIKKNEETIQFLEKC-RDIHDNEFTQILKEQAENNQKAIAELKRESRHQLSSDDDDINMVGRKQHSVFKFSS 236
                  58999*****************9.67999****************************99999999999877766666654 PP

>> PF12825.2  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0011       2.5     147     227 ..      23     106 ..       8     115 .. 0.77
   2 !   12.0   3.2   2.3e-05     0.052     103     189 ..     147     230 ..     146     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0011
    PF12825.2 147 keeireeaekekedlllvilrssrlepklsa.....eqveeviesyeayknakesekeeeeseeaelyenlkellklllrkrDkdl 227
                    ++r   + +++++ l++lrss+   ++++     e+v+ +++ ++ ++n++++++ + ++  ++l  +  +  +++++++  ++
  MMETSP0890-20130614|11137_1  23 ESKVRVVIRVKNNKIFLTVLRSSE--DNVEPwhwvgEKVNWIKTTQNLWRNENDNDSIKIQELAEKLTLDYSNNYSIQIEEHCGRM 106
                  566777778899***********9..3333334677****************9999778788888887777777777777765555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.3e-05
    PF12825.2 103 mvLnddlkefekeikelekkikdeaksevlleklkkyveadedkkeeireeaekekedlllvilrssrlepklsaeqveeviesyea 189
                  + L+++ +++++ i++l++kik+    e+ ++ l+k+ +  +++  +i +e+++++++ ++ + r+sr++ + ++++++ v + + +
  MMETSP0890-20130614|11137_1 147 IALEKECRDQKEIIENLKNKIKK---NEETIQFLEKCRDIHDNEFTQILKEQAENNQKAIAELKRESRHQLSSDDDDINMVGRKQHS 230
                  57999******************...5************888888899999999999999999999998888888888888766554 PP

>> PF05335.8  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   3.6e-05     0.081      64     140 ..     143     215 ..     127     232 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
    PF05335.8  64 GKqqlleqlekevreaeavveeeskslqaaeanakaaakaakqaqkqlktlkallkeaqenleniekvaseaqqela 140
                  GK+ +  +leke r+ ++++e+ ++++++ e++++  +k ++   +++ ++  l ++a++n ++i ++  e+ ++l+
  MMETSP0890-20130614|11137_1 143 GKRCI--ALEKECRDQKEIIENLKNKIKKNEETIQFLEKCRDIHDNEFTQI--LKEQAENNQKAIAELKRESRHQLS 215
                  66655..69*******************************99999887654..345555555566666655555554 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.1     5e-05      0.11      10     160 ..      78     237 ..      73     273 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5e-05
                  XXXXXXXXXXX.XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXX CS
   PF01496.14  10 vqfrDlnedvs.afqrkfvnevrr.ldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk........veelrelssldeefkalraaeglklgfvaGvikreklealer 160
                  +++++l e+++ +++ +++ ++ + +  +   +  le+ ik +  +++ +k+ +++  ++ + d  ++   le+e ++ +e+ e+L++++++ ee+ ++l+++++  +++         +++++++++l+ e  +  +++  +++ ++G  + + ++   +
  MMETSP0890-20130614|11137_1  78 IKIQELAEKLTlDYSNNYSIQIEEhCGRMLYFMLRLERGIKIKLCKFQLTKSLSSATVPEILFDAGKRCIALEKECRDQKEIIENLKNKIKKNEETIQFLEKCRDIHDNEFtqilkeqaENNQKAIAELKRESRHQLSSDDDDIN-MVGRKQHSVFKFSSS 237
                  667777777776666666666543255565566667788888888888899999999999999****************************************999999655555444433333455555555554444444444.555555544444444 PP

>> PF07802.6  GCK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   0.00017      0.39      19      76 .]     147     206 ..     144     206 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00017
    PF07802.6  19 val.eeCveeae.kekekdkvtkckevraklkkCmdehsdYYePlLavekaaeeklkkel 76 
                  +al  eC++++e  e+ k+k+ k +e  + l kC d h + +  +L+ +++ ++k+ +el
  MMETSP0890-20130614|11137_1 147 IALeKECRDQKEiIENLKNKIKKNEETIQFLEKCRDIHDNEFTQILKEQAENNQKAIAEL 206
                  677678*97776246778*******************************99999987775 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.3   0.00034      0.77     106     189 ..     103     202 ..      58     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00034
    PF05529.7 106 sGftLfLslvlrrvvtlvselvkleeklealkkqaesatkaakkl..keekekklkeeveklkkelee...............kekdlealkkqaeglqke 189
                  +G +L+++l l+r +++ +  ++l ++l ++    e   +a k++   e++ +++ke +e+lk+++++                ++  ++lk+qae+ qk+
  MMETSP0890-20130614|11137_1 103 CGRMLYFMLRLERGIKIKLCKFQLTKSLSSATV-PEILFDAGKRCiaLEKECRDQKEIIENLKNKIKKneetiqflekcrdihDNEFTQILKEQAENNQKA 202
                  899***********9998777777777776665.4555666666666777778888889*********999999999999884444457899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1336  (0.097718); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:01.02
# Mc/sec: 836.38
//
Query:       MMETSP0890-20130614|11159_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.67
# Mc/sec: 329.05
//
Query:       MMETSP0890-20130614|11257_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-25   88.6   5.9    8.8e-25   86.6   3.1    2.2  2  PF12756.2  C2H2 type zinc-finger (2 copies)
     0.0038   17.2   7.4      0.041   13.9   0.0    3.2  3  PF12171.3  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
       0.08   10.9   2.7       0.11   10.4   1.9    1.1  1  PF03154.10 Atrophin-1 family
        2.4    5.8  23.0       0.28    8.9   5.8    2.1  2  PF04147.7  Nop14-like family


Domain annotation for each model (and alignments):
>> PF12756.2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   5.8e+02      59      77 ..      11      29 ..       2      47 .. 0.78
   2 !   86.6   3.1   2.6e-28   8.8e-25       4     100 ..     142     237 ..     139     238 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.17
    PF12756.2 59 efkslealreHmkkkgHck 77
                  f + +a+++H+++  H+ 
  MMETSP0890-20130614|11257_1 11 VFADEQAYKAHLRTDWHRY 29
                 366999********99975 PP

  == domain 2    score: 86.6 bits;  conditional E-value: 2.6e-28
    PF12756.2   4 fcekeskeveellehmkkehgffipekeylvdleglleylrekieekleClyCekefkslealreHmkkkgHckinyeeeeekkeiekfYdflssde 100
                  f  k+++++++ le+m+k++g++ipe++yl+d+e+l +yl ek++++  ClyC+++f+  +a+++Hm +k+Hcki+ye++e  +e+++fYdf ss++
  MMETSP0890-20130614|11257_1 142 FDAKHFNDCTSALEYMRKQYGLYIPEPTYLIDVEKLAQYLCEKVKQHRVCLYCSRQFRFFRACQQHMIDKSHCKIAYETDEALEELADFYDF-SSSY 237
                  88899999************************************************************************************.7665 PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.2e-05     0.041       9      27 .]      10      28 ..       9      28 .. 0.95
   2 ?    2.0   3.5     0.062   2.1e+02       3      22 ..     190     209 ..     188     214 .. 0.77
   3 ?   -0.8   0.0      0.48   1.6e+03       6      18 ..     213     225 ..     212     226 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-05
                 -B-SSHHHHHHHTT-HHHH CS
    PF12171.3  9 kyFksenqlknHlksKkHK 27
                 k F +e+++k+Hl++ +H+
  MMETSP0890-20130614|11257_1 10 KVFADEQAYKAHLRTDWHR 28
                 99****************7 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.062
                  B-TTT--B-SSHHHHHHHTT CS
    PF12171.3   3 YCvaCdkyFksenqlknHlk 22 
                  +C +C+++F    + ++H+ 
  MMETSP0890-20130614|11257_1 190 VCLYCSRQFRFFRACQQHMI 209
                  6********87777777775 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.48
                  TT--B-SSHHHHH CS
    PF12171.3   6 aCdkyFksenqlk 18 
                  +C + + ++++l+
  MMETSP0890-20130614|11257_1 213 HCKIAYETDEALE 225
                  8*********998 PP

>> PF03154.10  Atrophin-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.9   3.3e-05      0.11      32     133 ..      38     139 ..      21     149 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.3e-05
   PF03154.10  32 aspvnedlrssgrnspsaastssndskaeslkksakkikeeaasplksakrqrekpasdteetervsakksktqelsrpnspsesegegegegessdsrsvn 133
                  +s v e+   +  +s+  ast+ n++k++s  k++k+ +  a     +   +   ++ d+  + r    +  tq ++   +p e e + +ge  ++++r+++
  MMETSP0890-20130614|11257_1  38 MSMVSEEEYNTKVESQRLASTQGNTEKQDSHVKPSKRDQHRAKKKAGQGYARAGAVTWDSVAAYRQQRTQEETQTVDAEGDPMEEEEDDDGEIVTAEARAID 139
                  6788999999999***********************988888877555555556667788888899999999***********99999999999****9986 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   4.6    0.0049        17     280     359 ..      43     133 ..      32     156 .. 0.68
   2 ?    8.9   5.8   8.2e-05      0.28     317     388 ..     220     291 ..     202     330 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0049
    PF04147.7 280 eaerlkklEeeRlrRmrgeeeddeeeedse....kesaddlddefe......edddenfglgsaeeeeeeeeeegvededeeeddddee.e 359
                  e+e   k E +Rl+  +g  e++++  + +    ++ + + + ++       +d   ++++++ +ee+++ ++eg   e+ee+dd + + +
  MMETSP0890-20130614|11257_1  43 EEEYNTKVESQRLASTQGNTEKQDSHVKPSkrdqHRAKKKAGQGYAragavtWDSVAAYRQQRTQEETQTVDAEGDPMEEEEDDDGEIVtA 133
                  6777789***********7777766554432444444444444444889988888888888877777777776777777766666666533 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 8.2e-05
    PF04147.7 317 ddefeedddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeee 388
                   de+ e+ ++ ++ +s+ ++ e+e+ ++v ++de++dddd++++  dvd dee+    d ++++++  +ee 
  MMETSP0890-20130614|11257_1 220 TDEALEELADFYDFSSSYDQYETEDLQDVGINDEDDDDDDDDDDWVDVDPDEEDGFGADIDDSNQSTVNEEP 291
                  355567888889999999999999999999999999999999888888887776666666555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.75
# Mc/sec: 1393.08
//
Query:       MMETSP0890-20130614|11298_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-22   78.0   0.1    4.3e-22   77.6   0.1    1.1  1  PF00085.15 Thioredoxin
    2.3e-07   30.8   0.0      8e-07   29.1   0.0    1.7  1  PF13098.1  Thioredoxin-like domain
    0.00019   20.8   0.0    0.00021   20.6   0.0    1.1  1  PF02966.11 Mitosis protein DIM1
     0.0002   21.3   0.0    0.00044   20.2   0.0    1.5  1  PF13905.1  Thioredoxin-like
     0.0011   18.3   0.0     0.0016   17.8   0.0    1.3  1  PF08534.5  Redoxin
      0.004   17.0   0.0     0.0059   16.5   0.0    1.3  1  PF13899.1  Thioredoxin-like
     0.0057   16.3   0.0     0.0081   15.8   0.0    1.2  1  PF06491.6  Disulphide isomerase
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.014   14.9   0.0    1.2  1  PF00578.16 AhpC/TSA family
      0.024   14.5   0.0        1.1    9.1   0.1    2.2  2  PF13462.1  Thioredoxin


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.1   2.8e-25   4.3e-22       5     102 ..      42     142 ..      38     144 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 2.8e-25
                  SSHHHHHHHHHH.HHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTT...HHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHH CS
   PF00085.15   5 ltkenfeeevak.sdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvden...kdlaseygvegiPtlklfkngkkveevegarekeklvaflk 102
                   ++++f++++++ +d+lv+v+f ++wCG+Ck ++P++++l+e+++++  ++kv  d++   + l ++ gv+++P ++++kng++v+ v+ga + +++++ l+
  MMETSP0890-20130614|11298_1  42 NSEKAFDTAIKNaKDTLVVVDFATTWCGPCKVMEPKVTELSEKYTDSALFYKVTGDASadaSALMKREGVRAVPSFHFWKNGERVDVVNGA-NIDAVTNSLQ 142
                  46788*****99556899***********************************888662225678999**********************9.8887777765 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.3e-10     8e-07       3     102 ..      54     132 ..      51     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 5.3e-10
    PF13098.1   3 gngkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklgvrgtPtivfldgeGklvarlpGy 102
                  ++   v+v+f +++C+ Ck +++++ +   +++++ d   ++ v  d s+                 + ++l+++ gvr +P++ f  ++G+ v +++G+
  MMETSP0890-20130614|11298_1  54 AKDTLVVVDFATTWCGPCKVMEPKVTE---LSEKYTDSALFYKVTGDASA-----------------DASALMKREGVRAVPSFHFW-KNGERVDVVNGA 132
                  456789*******************95...78888889999999999654.................3469***************9.69**99999997 PP

>> PF02966.11  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.4e-07   0.00021       2      84 ..      38     122 ..      37     145 .] 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.4e-07
   PF02966.11   2 lpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaekvknfaviylvdidevpdfnkmyele..dpvtvlffyrn 84 
                  l++L+++++ d+ai++ ++ lvv+ F   +   C  ++  +++ +ek    a +y v  d   d + ++  e    v  + f++n
  MMETSP0890-20130614|11298_1  38 LKELNSEKAFDTAIKNAKDTLVVVDFATTWCGPCKVMEPKVTELSEKYTDSALFYKVTGDASADASALMKREgvRAVPSFHFWKN 122
                  899*****************************************************99998888877777665344444445444 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.9e-07   0.00044       2      32 ..      57      87 ..      55      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.9e-07
    PF13905.1  2 kivllyfaaswcppckaftpelkelyeklka 32
                  +v+++fa++wc+pck   p+++el ek+ +
  MMETSP0890-20130614|11298_1 57 TLVVVDFATTWCGPCKVMEPKVTELSEKYTD 87
                 579*************************984 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0016      22      61 ..      48      88 ..      32     115 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
                 EHHH.HTTSEEEEE---------IIIIIHHHHTHHHH.HH- CS
    PF08534.5 22 slsd.fkgkkvvlvfvpgafcptCsaehpyleklaklakek 61
                 +++   +  ++v+v +++++c++C+   p + +l++++ + 
  MMETSP0890-20130614|11298_1 48 DTAIkNAKDTLVVVDFATTWCGPCKVMEPKVTELSEKYTDS 88
                 4444445667788888888*******999********9886 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.9e-06    0.0059       7      79 ..      44     119 ..      39     122 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.9e-06
    PF13899.1   7 dealakareegkpllv..ifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdv.terdanleldrqg...vPvvvf 79 
                  ++a+  a ++ k  lv  +f  +wc++C++++  v  +e  ++ + +   + +v    + da++ ++r+g   vP + f
  MMETSP0890-20130614|11298_1  44 EKAFDTAIKNAKDTLVvvDFATTWCGPCKVMEPKV--TELSEK-YTDSALFYKVTGdASADASALMKREGvraVPSFHF 119
                  566777777777766633788**********9887..323334.77777777777744445555666655555776665 PP

>> PF06491.6  Disulphide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.3e-06    0.0081      13     119 ..      33     137 ..      28     143 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.3e-06
    PF06491.6  13 lteaGfeelktaeevdealkekegttlvvvnsvCGCa.aglaRPaaaqalekdkkPdklvtvFaGqdkeatakaReylegypPssPslallkdgelvhlieReeiegr 119
                  l+   ++el+++++ d+a+k++++t +vv  ++  C    ++ P +++  ek +    +  v      +a a ++    +   + Ps+ + k+ge v +++  +i++ 
  MMETSP0890-20130614|11298_1  33 LELDALKELNSEKAFDTAIKNAKDTLVVVDFATTWCGpCKVMEPKVTELSEKYTDSALFYKVTGDASADASALMKR---EGVRAVPSFHFWKNGERVDVVNGANIDAV 137
                  5556789*************99998877755555554146789999998887666666666655555555555544...34557899*************99999865 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   9.3e-06     0.014      18      80 ..      49     109 ..      34     120 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.3e-06
   PF00578.16  18 vslsdlkgkpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspeshkkfaekn 80 
                    +++ k+  vv+ f ++ +c +C+   p+ +el e++++  + ++ v+ d   +  + ++++
  MMETSP0890-20130614|11298_1  49 TAIKNAKDTLVVVDFATT-WCGPCKVMEPKVTELSEKYTDS-ALFYKVTGDASADASALMKRE 109
                  556778888899999999.*******************976.557777777777666666665 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00073       1.1      14      47 ..      57      88 ..      44      95 .. 0.85
   2 ?    3.4   0.0      0.04        61     125     149 ..     101     127 ..      92     139 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00073
    PF13462.1 14 pvtvieyadltCphCarfheevekllekyidtgk 47
                   +v+ +a   C  C+ ++ +v +l eky  t++
  MMETSP0890-20130614|11298_1 57 TLVVVDFATTWCGPCKVMEPKVTELSEKY--TDS 88
                 568999***********************..555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.04
    PF13462.1 125 adseeakaagiestPtfii..ngkkve 149
                    s+ +k+ g++++P+f    ng++v+
  MMETSP0890-20130614|11298_1 101 DASALMKREGVRAVPSFHFwkNGERVD 127
                  456788**********98878998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.44s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 496.39
//
Query:       MMETSP0890-20130614|11384_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-23   82.0   0.9    4.7e-23   81.6   0.6    1.1  1  PF00884.18 Sulfatase


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.6   3.5e-27   4.7e-23     128     379 .]      23     317 ..       7     317 .. 0.81

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 3.5e-27
                  CCCCGGGCSC-EEETTTES.GGGSHHHHHHHHHHHHH.HHCT.TSSEEEEEE--TTSSS----TTTTTSS-GGGS.............HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG.....HHH-TT----HHHHHHCCBEEEEEEE----TT......EE-S-EEGGGHHHHHHHH---......--TTST-----THHHH----.........................S.TT..CCEEEEEEECTB.CCCCCTS.CCCSCCCE........EETTT-TCC-CC CS
   PF00884.18 128 ednlknpedveynnsvlrppeggysdealldealefl.larn.dkPfflylatlgpHappyapdeyaekyatffddgeeka.......rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee.....gngplrggkgvnayeggtrvPllvwwpggkap.....rvseelvshvDlaptildlagilpk.vegpkdrlldgksllptlegka.........................qaddlkavrllnsraivkagweavnldpadasgcs........ydltaDpgelkn 379
                  +d +++ +  ++ ++++ ++++++ +  +++ al+ l + r  +  +++yla++g H+    ++     +++ +  +++           + +++ +++ +D  ig +l++ +e+  +++ l+vf SD+g s        +n p+rg k  +  eg+  vP+++++p  + +     r++ +l++hvD+++t+l+ ag+ p  +++ + ++ d +  +++l + a                         ++d+ k ++         + w++ ++ ++ +s c         +dl  Dp e +n
  MMETSP0890-20130614|11384_1  23 MDFMEYEDEASFSWDAGMKYKNEHTTILFTNAALKRLrKTREtKSSTYIYLAYHGLHD---DEQALTHIERDVDLKLWKSLdeffnytDRRLNFGKALSILDSEIGLILDYMKEEMHRRDYLIVFHSDNGGSPCArhicgNNMPYRGMKF-SDFEGALKVPAFMYSPTLFGKrgiigRKYRGLMHHVDWIATFLQVAGV-PDyHAQLNATTFDSVGHWNALLDVAvslksekyavrdtiyfslsddsyviRQDNFKLIYG-----YENDTWYSTKTEYEHLSNCYsgltdyylFDLDLDPTETNN 317
                  45556666666666666699999**************966666**************7...444444444555555565547777777999****************************************998899**9*********9.************************************************.668888889999999999999998899998877777777777666667765555555554.....2233334444444444444467778889*******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.78
# Mc/sec: 1127.52
//
Query:       MMETSP0890-20130614|11404_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-20   72.0   0.2    8.9e-20   70.8   0.0    1.6  2  PF02469.17 Fasciclin domain


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   6.5e-24   8.9e-20       2     125 .]     140     253 ..     139     253 .. 0.95
   2 ?   -2.8   0.0      0.41   5.6e+03      81     100 ..     341     365 ..     330     378 .. 0.67

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 6.5e-24
                  HHHHHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHHHHEEBCCC-EEEEEEE---EEEEEE.EEEEEEEEE------EEEESS-S-- CS
   PF02469.17   2 efstfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpetvsssdlkkaeqlatlegaklrvnikgngtvtvng.karvvrsdieatngvihvidkvLlp 125
                  e+st+v+++ + +l++ L      +TvFaP n+Af         ++  d + l + L+yH+v++++ +++++++++++ l+g+ +++++  ++tv +n+ +a+++ +d +a+ng ih+i+ vL p
  MMETSP0890-20130614|11404_1 140 ELSTLVDAVASENLVDVL-APPATVTVFAPDNNAF---------SVAGDIDNLGDTLRYHIVSGSYGAESFTDGMEFTALSGDIISISVA-DDTVSFNNgQASLLVADLQASNGYIHIINAVLTP 253
                  79****************.7779************.........455588999*************************************.99******************************88 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.41
                  CCC-EEEEEEE.....---EEEEEE CS
   PF02469.17  81 legaklrvnik.....gngtvtvng 100
                  +++++++v+++     ++++v++n+
  MMETSP0890-20130614|11404_1 341 TANDRIGVEVTvtgiaTGNNVVLND 365
                  4555666666655666666777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.43s 00:00:01.13 Elapsed: 00:00:00.82
# Mc/sec: 1297.54
//
Query:       MMETSP0890-20130614|11396_1  [L=1524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-23   81.8   8.3    7.8e-17   61.1   0.3    2.8  2  PF04403.8 Paraquat-inducible protein A
     0.0011   17.7   0.0     0.0023   16.6   0.0    1.4  1  PF06585.6 Haemolymph juvenile hormone binding protein (JHBP)


Domain annotation for each model (and alignments):
>> PF04403.8  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.3   1.1e-20   7.8e-17      30     145 ..    1031    1157 ..    1005    1164 .. 0.90
   2 !   23.0   1.5   6.2e-09   4.2e-05      56     123 ..    1298    1362 ..    1293    1369 .. 0.92

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 1.1e-20
    PF04403.8   30 lglreestilggvlaLweegsllvAllvflasivvPllklllllllllslqrkrklpakkrllrileaigkWsMlDVfvvailvalvklaa.............lasiepgpglwaFalvvlltmlaas 145 
                   lg++++ ++++ v++Lwe+gs+l+Allv+ +s + P+l++ ll++ +   +   ++++++ + r +e+ +kWs++DVf+v +lv ++ +                + iep+++++aF+l++l +m++ +
  MMETSP0890-20130614|11396_1 1031 LGTNSKFSLIDSVTELWESGSYLLALLVAGLSGFWPYLEIGLLIWGYTGKN--INPKRREWIWRCVEMFSKWSFIDVFIVVFLVVAFYIHVdlklaendsqfraELFIEPRYAFYAFCLATLTSMCLGQ 1157
                   7899999**************************************999985..44445555**********************99988887789999****9887789****************99866 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 6.2e-09
    PF04403.8   56 lvflasivvPllklllllllllslqrkrklpakkrllrileaigkWsMlDVfvvailvalvklaalas 123 
                   +v++++ ++Pll +lll +l+l      ++p + rll + ++   Ws lDV++v il ++ ++++l +
  MMETSP0890-20130614|11396_1 1298 IVLIFACIIPLLHVLLLGILWLIPL---TAPSQVRLLAFADVAYGWSSLDVYLVTILATATQVNKLSE 1362
                   89***************99999884...7888889*****************************9875 PP

>> PF06585.6  Haemolymph juvenile hormone binding protein (JHBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.3e-07    0.0023     123     229 ..      79     178 ..      65     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.3e-07
    PF06585.6 123 lsvkGkYklkgkvlllpikgkGdfnltlknvkatgklkgkveekdgetylkieklkvefkvgdmkfdlenlfngnkelgdainkflnenwkevldelkpdieealek 229
                   + +GkY+ + +  l ++kg+G+++   kn ++++++ ++v+  +  +yl++++ + ++k+ d+    +        lgda+n f+++ ++ + de+++++ + l +
  MMETSP0890-20130614|11396_1  79 AKCEGKYDWSYNTGLGKVKGDGKVEAIVKNSRVETEMYIQVDDLQAPNYLHVDRCDADIKITDIDTRGDP-------LGDAANAFIDSFAPFFEDEIEKYVCDLLRD 178
                  46789*******9999***************************8899*************9888877755.......588888888888888888877777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.99u 0.41s 00:00:02.40 Elapsed: 00:00:01.65
# Mc/sec: 2213.36
//
Query:       MMETSP0890-20130614|11426_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-09   37.3   0.3    1.1e-08   34.5   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   8.1e-13   1.1e-08       1      39 []       4      43 ..       4      43 .. 0.97
   2 ?    1.3   0.0     0.022   3.1e+02      13      22 ..      58      67 ..      48      70 .] 0.82

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 8.1e-13
                 TEEEEEEESSSSSEEEEEEESSSTEEEEEE.TTSEEEEEE CS
   PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgS.rDgtirlWd 39
                 g++k+tl gHts +++ +fs dg++++s + +D+t r+Wd
  MMETSP0890-20130614|11426_1  4 GQLKRTLAGHTSQIEDSCFSTDGNRVVSVGkYDKTARIWD 43
                 6799***********************************9 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.022
                 SEEEEEEESS CS
   PF00400.27 13 pVtcvafspd 22
                 + ++++f p+
  MMETSP0890-20130614|11426_1 58 FARSCDFTPN 67
                 6689***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.55
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|11439_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-24   85.2   0.1    4.1e-24   85.2   0.1    1.0  1  PF04699.9 ARP2/3 complex 16 kDa subunit (p16-Arc)
  ------ inclusion threshold ------
       0.11   12.7   0.3       0.17   12.0   0.2    1.4  1  PF08066.7 PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> PF04699.9  ARP2/3 complex 16 kDa subunit (p16-Arc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.1     6e-28   4.1e-24      58     152 .]       6     101 .]       1     101 [] 0.91

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 6e-28
    PF04699.9  58 lvLenap..lgadd.avKeaalktvlevLqsikasdiekvvkkldseqlDvLmkYlYkgmaapsgasqmsvlLsWheklvevaGlgsIvrvltdrrtv 152
                   +L++ap  ++++d ++K+a++k v+ ++  + ++++ + v+++d+e  D+L+kY+Y+g+++ s+++    l++W  kl+e+ G+gsI+rvltdr+tv
  MMETSP0890-20130614|11439_1   6 QLLDEAPsiMNGKDaDAKSAHAKKVFSAMDRLNEKQMVETVDSIDQEPGDILLKYVYRGLEVASENNA--ALFKWQAKLTEKFGTGSIIRVLTDRKTV 101
                  456666644567788**************************************************987..9*************************98 PP

>> PF08066.7  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.5e-05      0.17      41      80 ..       1      40 [.       1      51 [. 0.95

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.5e-05
    PF08066.7 41 inkllksaasksrikkrkdeesvedqwkavvdvlDsllEk 80
                 ++kll+++++   i + kd++  +++ k+v +++D l Ek
  MMETSP0890-20130614|11439_1  1 MDKLLQLLDEAPSIMNGKDADAKSAHAKKVFSAMDRLNEK 40
                 89***********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 350.77
//
Query:       MMETSP0890-20130614|11441_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 343.01
//
Query:       MMETSP0890-20130614|11443_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-33  115.5   0.0      3e-33  115.1   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   2.2e-37     3e-33       9     155 ..      43     195 ..      35     196 .. 0.83

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 2.2e-37
                  XXXXXX.XXXXXX.---....-TTTTT--------TTT------------------S--TT--....STT-------S-TT.THHHH---HHHHHHHHTT------...------------------.-----------STTT----TTTTT------- CS
   PF00504.16   9 lpgdlg.fDplglskdp....tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa...waeagglslptllalqillligflelareqelkapeseg...sekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  ++ ++g fDp+g+ +      ++  ++e+E++HGRvAMla+ G+l++e +  l    + +++p+   ++++      + ++ +++++igf+e++++  + + ++++    + ++ pG+lgfdplgl  kd++ ++  ++ Ei+nGRlAMi+++g+++q+
  MMETSP0890-20130614|11443_1  43 VSLPFGfFDPAGFVETDaqleQYSLYKESEIKHGRVAMLAAPGFLLAEKFHPLF--GGDIDTPSyvaFQQT----PLQKFWPFVVAAIGFIEFKSSVPTYEDPDKEmwsIKPDHTPGNLGFDPLGLMpKDAAGAKAVATREINNGRLAMIGIAGMIAQE 195
                  667899********64459999999***********************775543..356778885423322....4555788***********9887776666666799666788*******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.88
# Mc/sec: 555.52
//
Query:       MMETSP0890-20130614|11505_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-17   62.2   1.6    3.6e-17   61.6   1.1    1.3  1  PF00364.17 Biotin-requiring enzyme
    3.1e-06   26.6   0.5      0.017   14.6   0.0    2.3  2  PF13533.1  Biotin-lipoyl like
    0.00028   21.0   0.5       0.32   11.2   0.0    2.4  2  PF13437.1  HlyD family secretion protein
  ------ inclusion threshold ------
      0.075   12.0   0.4       0.38    9.7   0.1    1.8  2  PF12700.2  HlyD family secretion protein
       0.11   12.7   4.0       0.13   12.4   2.8    1.3  1  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   1.1   1.3e-20   3.6e-17      14      74 .]       3      63 ..       1      63 [. 0.96

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 1.3e-20
                 E--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEEE CS
   PF00364.17 14 egtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 74
                 +g +++++v++G + +ag+v++eve++K+++++ea+++G+v++il++ G++v vg+++++i
  MMETSP0890-20130614|11505_1  3 SGVIASWKVSEGGSYAAGDVICEVETDKATVDFEAQDDGIVAKILAEAGNEVGVGSPIMVI 63
                 567899*****************************************************97 PP

>> PF13533.1  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.3e-06     0.017      10      37 ..       3      30 ..       2      39 .. 0.89
   2 !   10.4   0.2   0.00013      0.35      10      37 ..      40      67 ..      31      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.3e-06
    PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldsek 37
                 sG++++++V+eG +  +GDv+ e++ +k
  MMETSP0890-20130614|11505_1  3 SGVIASWKVSEGGSYAAGDVICEVETDK 30
                 8********************9998776 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00013
    PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldsek 37
                 +G+V+++l+  G eV  G +++++ +++
  MMETSP0890-20130614|11505_1 40 DGIVAKILAEAGNEVGVGSPIMVIVEDE 67
                 8**********************98875 PP

>> PF13437.1  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00012      0.32       7      39 ..       3      36 ..       1      38 [. 0.81
   2 !    8.6   0.1   0.00074         2       4      33 ..      37      66 ..      34      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
    PF13437.1  7 dGvVhevnvqegqvvaagdplaeiipt.delkve 39
                 +Gv+++++v+eg+  aagd++ e+  + +++ +e
  MMETSP0890-20130614|11505_1  3 SGVIASWKVSEGGSYAAGDVICEVETDkATVDFE 36
                 8**********************99543444444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00074
    PF13437.1  4 ApvdGvVhevnvqegqvvaagdplaeiipt 33
                 A+ dG+V+++ ++ g+ v  g p++ i+ +
  MMETSP0890-20130614|11505_1 37 AQDDGIVAKILAEAGNEVGVGSPIMVIVED 66
                 777************************976 PP

>> PF12700.2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.042   1.1e+02      29      57 ..       3      32 ..       2      38 .. 0.87
   2 ?    9.7   0.1   0.00014      0.38      21      57 ..      32      69 ..      25      75 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.042
    PF12700.2 29 sGyi.kylvkeGekVkkgqvlatldsseld 57
                 sG i +++v+eG   ++g+v++++++++ +
  MMETSP0890-20130614|11505_1  3 SGVIaSWKVSEGGSYAAGDVICEVETDKAT 32
                 89999*******************999876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00014
    PF12700.2 21 eevvsaeesGyi.kylvkeGekVkkgqvlatldsseld 57
                  +++ a+++G + k+l++ G+ V+ g+ ++++ ++e+d
  MMETSP0890-20130614|11505_1 32 TVDFEAQDDGIVaKILAEAGNEVGVGSPIMVIVEDEKD 69
                 567899**************************988875 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.8   4.6e-05      0.13      52      95 ..      84     127 ..      26     170 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.6e-05
    PF10152.4  52 eledqdelpappaaarrsggpppppgaraeaaaqeaeaaraetp 95 
                  ++++++  p+p +a + s +pp+p++a    aa++a+a+++++p
  MMETSP0890-20130614|11505_1  84 TPQKSQAAPEPAPAPTASASPPAPAPAPTPVAAAPAPAPPVAEP 127
                  22222222222222222222222222111112222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 517.73
//
Query:       MMETSP0890-20130614|11529_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.89
# Mc/sec: 199.25
//
Query:       MMETSP0890-20130614|11530_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-35  116.2  11.9    6.9e-10   37.3   0.0    4.3  4  PF00036.27 EF hand
    7.7e-30  102.7   8.9    9.1e-16   57.6   0.4    2.2  2  PF13499.1  EF-hand domain pair
    3.7e-29   97.8   7.6    7.3e-10   37.7   0.0    4.2  4  PF13405.1  EF-hand domain
    1.7e-25   87.0  10.0    2.5e-07   29.6   0.0    4.3  4  PF13202.1  EF hand
      2e-24   84.8   7.3    3.8e-11   42.2   0.3    4.2  4  PF13833.1  EF-hand domain pair
    1.5e-06   27.7   5.5      0.046   13.3   0.2    3.2  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
    2.1e-05   24.4   0.2       0.14   12.0   0.1    2.1  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
     0.0012   18.3   0.8       0.14   11.5   0.0    3.0  3  PF05042.8  Caleosin related protein
  ------ inclusion threshold ------
      0.011   15.8   0.0       0.58   10.2   0.0    2.3  2  PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
      0.012   15.1   1.3         10    5.7   0.0    3.4  3  PF04760.10 Translation initiation factor IF-2, N-terminal region
      0.012   15.0   0.6        1.4    8.3   0.1    2.2  1  PF04876.7  Tenuivirus major non-capsid protein
      0.046   13.3   1.1       0.85    9.2   0.0    2.9  3  PF05099.8  Tellurite resistance protein TerB
       0.13   11.2   0.0       0.16   10.9   0.0    1.2  1  PF11814.3  Peptidase_C39 like family


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   6.6e-13   6.9e-10       1      29 []      28      56 ..      28      56 .. 0.96
   2 !   32.4   0.6   2.5e-11   2.7e-08       2      28 ..      65      91 ..      64      92 .. 0.92
   3 !   20.5   0.2   1.6e-07   0.00016       1      28 [.     101     128 ..     101     129 .. 0.91
   4 !   31.7   0.1   4.1e-11   4.3e-08       1      28 [.     137     164 ..     137     165 .. 0.96

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 6.6e-13
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkkl 29
                 e++eaF++fD+Dg+G+I+ +E+k+a+++l
  MMETSP0890-20130614|11530_1 28 EIREAFNLFDTDGSGTIDPKELKAAMQSL 56
                 79************************985 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 2.5e-11
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                 + ++++ +DkDg+G I+feEf++++++
  MMETSP0890-20130614|11530_1 65 IYQMISDIDKDGSGAIDFEEFLDMMTA 91
                 679**********************86 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.6e-07
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  +++++F++fD D++G+I++  +k++ k+
  MMETSP0890-20130614|11530_1 101 DIQKVFNLFDDDQSGFITLRNLKRVAKE 128
                  589****************999998876 PP

  == domain 4    score: 31.7 bits;  conditional E-value: 4.1e-11
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  el+e+++ +D+D+dG+I+ +Ef ++++k
  MMETSP0890-20130614|11530_1 137 ELMEMIERADTDNDGQINPDEFYAIMTK 164
                  799***********************97 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.4   8.7e-19   9.1e-16       2      66 .]      29      89 ..      28      89 .. 0.91
   2 !   49.2   1.6   3.7e-16   3.9e-13       2      66 .]     102     162 ..      93     162 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 8.7e-19
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                 ++eaF+l+D+dg+g++d+ eL+++++ lg     e + + +++ + ++Dk+g+G ++feEfl ++
  MMETSP0890-20130614|11530_1 29 IREAFNLFDTDGSGTIDPKELKAAMQSLG----FEAKNQTIYQMISDIDKDGSGAIDFEEFLDMM 89
                 899**************************....66666666666******************997 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 3.7e-16
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  ++++F+l+D d++g+++   L+r++k lg+ +sd e+ e+    ++++D+++dG+++ +Ef++++
  MMETSP0890-20130614|11530_1 102 IQKVFNLFDDDQSGFITLRNLKRVAKELGETMSDAELMEM----IERADTDNDGQINPDEFYAIM 162
                  6779************************************....******************997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   6.9e-13   7.3e-10       1      31 []      28      57 ..      28      57 .. 0.96
   2 !   20.0   0.1   3.5e-07   0.00037       9      27 ..      72      90 ..      65      96 .. 0.91
   3 !   25.0   0.2   8.5e-09     9e-06       2      31 .]     102     130 ..     101     130 .. 0.91
   4 !   17.1   0.0   2.9e-06     0.003       7      28 ..     143     164 ..     137     167 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 6.9e-13
                 HHH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrkslg 31
                 e+reaF+lfD+dg+G+id +EL++a++ slg
  MMETSP0890-20130614|11530_1 28 EIREAFNLFDTDGSGTIDPKELKAAMQ-SLG 57
                 79************************9.887 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 3.5e-07
                 C-------B---HHHHHHH CS
    PF13405.1  9 fDkdgdGkidaeELrdaLr 27
                 +Dkdg+G id+eE++d+++
  MMETSP0890-20130614|11530_1 72 IDKDGSGAIDFEEFLDMMT 90
                 8****************98 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 8.5e-09
                  HH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrkslg 31 
                  ++++F+lfD+d++G+i++  L+++ +  lg
  MMETSP0890-20130614|11530_1 102 IQKVFNLFDDDQSGFITLRNLKRVAK-ELG 130
                  89*********************998.665 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 2.9e-06
                  GCC-------B---HHHHHHH. CS
    PF13405.1   7 klfDkdgdGkidaeELrdaLrk 28 
                  +  D+d+dG+i+ +E+ ++++k
  MMETSP0890-20130614|11530_1 143 ERADTDNDGQINPDEFYAIMTK 164
                  567****************984 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.4e-10   2.5e-07       1      23 [.      29      51 ..      29      53 .. 0.90
   2 !   20.6   0.3   1.6e-07   0.00017       6      23 ..      70      87 ..      65      89 .. 0.85
   3 !   19.3   0.2   4.3e-07   0.00045       1      24 [.     102     125 ..     102     126 .. 0.94
   4 !   21.5   0.0   8.2e-08   8.6e-05       5      24 ..     142     161 ..     138     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2.4e-10
                 HHHHHHHH--S----B-HHHHHH CS
    PF13202.1  1 lkdtFrafDlNgDGkIsreELkr 23
                 ++++F+ fD++g+G+I+++ELk+
  MMETSP0890-20130614|11530_1 29 IREAFNLFDTDGSGTIDPKELKA 51
                 6778*****************98 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1.6e-07
                 HHH--S----B-HHHHHH CS
    PF13202.1  6 rafDlNgDGkIsreELkr 23
                 + +D++g+G I++eE+  
  MMETSP0890-20130614|11530_1 70 SDIDKDGSGAIDFEEFLD 87
                 68**************65 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 4.3e-07
                  HHHHHHHH--S----B-HHHHHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                  ++++F+ fD + +G+I+   Lkr+
  MMETSP0890-20130614|11530_1 102 IQKVFNLFDDDQSGFITLRNLKRV 125
                  799******************997 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 8.2e-08
                  HHHH--S----B-HHHHHHH CS
    PF13202.1   5 FrafDlNgDGkIsreELkrl 24 
                   +++D+++DG+I+++E++++
  MMETSP0890-20130614|11530_1 142 IERADTDNDGQINPDEFYAI 161
                  6789*************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   4.2e-08   4.4e-05      25      54 .]      27      56 ..      17      56 .. 0.92
   2 !   42.2   0.3   3.7e-14   3.8e-11       3      52 ..      42      90 ..      41      92 .. 0.95
   3 !    7.1   0.3    0.0036       3.7      25      43 ..     100     118 ..      98     119 .. 0.87
   4 !   35.5   0.1   4.8e-12     5e-09       2      53 ..     114     164 ..     113     165 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.2e-08
    PF13833.1 25 eevdilfrefDtdgdGkisfeEFcvllerl 54
                 ee+++ f++fDtdg+G i+ +E ++++++l
  MMETSP0890-20130614|11530_1 27 EEIREAFNLFDTDGSGTIDPKELKAAMQSL 56
                 689999*********************975 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 3.7e-14
    PF13833.1  3 GlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52
                 G I+++eLk a+++lg +  ++++++ +++ +D dg+G+i+feEF+++++
  MMETSP0890-20130614|11530_1 42 GTIDPKELKAAMQSLGFE-AKNQTIYQMISDIDKDGSGAIDFEEFLDMMT 90
                 89**********889999.******************************7 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0036
    PF13833.1  25 eevdilfrefDtdgdGkis 43 
                  e+++ +f++fD d++G i+
  MMETSP0890-20130614|11530_1 100 EDIQKVFNLFDDDQSGFIT 118
                  78999***********776 PP

  == domain 4    score: 35.5 bits;  conditional E-value: 4.8e-12
    PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                  +G It  +Lkr ++ lg   +s+ e+ +++  +Dtd+dG i+ +EF++ +++
  MMETSP0890-20130614|11530_1 114 SGFITLRNLKRVAKELGET-MSDAELMEMIERADTDNDGQINPDEFYAIMTK 164
                  799********88888999.***************************98875 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011        11      40      80 ..      21      65 ..      13      69 .. 0.75
   2 !   11.0   0.4   0.00022      0.24      48      69 ..      65      89 ..      57      95 .. 0.74
   3 !   13.3   0.2   4.4e-05     0.046       8      69 ..     101     162 ..      93     167 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.011
    PF12763.2 40 leedkleki...wdladidedgkldfeefciamr.lifdlvngei 80
                 l+ed++e+i   ++l d d  g++d +e+  am+ l f+  n++i
  MMETSP0890-20130614|11530_1 21 LSEDEIEEIreaFNLFDTDGSGTIDPKELKAAMQsLGFEAKNQTI 65
                 555555554333789***************999746677777665 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00022
    PF12763.2 48 iwd.ladidedg..kldfeefciam 69
                 i++ ++did+dg   +dfeef  +m
  MMETSP0890-20130614|11530_1 65 IYQmISDIDKDGsgAIDFEEFLDMM 89
                 554269***996336******8776 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 4.4e-05
    PF12763.2   8 eikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciam 69 
                  +i+k +++f+  ++    +t  ++  v k+    +++ +l ++ + ad d+dg+++ +ef  +m
  MMETSP0890-20130614|11530_1 101 DIQKVFNLFDDDQSG--FITLRNLKRVAKElgETMSDAELMEMIERADTDNDGQINPDEFYAIM 162
                  677777777765544..4444444444443215789999*********************8877 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00035      0.37      54     111 ..      27      86 ..      16      88 .. 0.86
   2 !   12.0   0.1   0.00013      0.14      49     111 ..      95     159 ..      86     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00035
    PF10591.4  54 eaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                  e+++  Fn +Dt+  + ++ +El++  ++l     ++ i ++++  D d  + i++eE+ 
  MMETSP0890-20130614|11530_1  27 EEIREAFNLFDTDGSGTIDPKELKAAMQSLgfEAKNQTIYQMISDIDKDGSGAIDFEEFL 86 
                  677778*******************9999876566788899999999999999*****96 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00013
    PF10591.4  49 skeckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                   k  +e ++  Fn +D ++ ++++ + l+ + ++l     ++   e+++++D+d+d++i+ +E+ 
  MMETSP0890-20130614|11530_1  95 DKDTREDIQKVFNLFDDDQSGFITLRNLKRVAKELgeTMSDAELMEMIERADTDNDGQINPDEFY 159
                  55677888999***********************987667788899*****************96 PP

>> PF05042.8  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00014      0.14       7      48 ..      27      68 ..      21      74 .. 0.83
   2 ?    2.4   0.0     0.085        89       4      37 ..      97     130 ..      94     143 .. 0.74
   3 ?    1.5   0.0      0.17   1.8e+02      14      31 ..     143     160 ..     130     167 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
    PF05042.8  7 svlqkhvaffdrnkdGivyPwetyqGlralGfnvivsvvlai 48
                  ++++   +fd+++ G++ P e    +++lGf+    ++  +
  MMETSP0890-20130614|11530_1 27 EEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQM 68
                 566677789************************988877665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.085
    PF05042.8   4 eemsvlqkhvaffdrnkdGivyPwetyqGlralG 37 
                    +  +qk   +fd ++ G+++  +  +  ++lG
  MMETSP0890-20130614|11530_1  97 DTREDIQKVFNLFDDDQSGFITLRNLKRVAKELG 130
                  56677899999*********98776666666666 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.17
    PF05042.8  14 affdrnkdGivyPwetyq 31 
                     d+++dG + P e y 
  MMETSP0890-20130614|11530_1 143 ERADTDNDGQINPDEFYA 160
                  556899999999999886 PP

>> PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00055      0.58      24      72 ..      17      70 ..      14      81 .. 0.64
   2 ?    3.5   0.0     0.068        72      27      72 ..      93     143 ..      85     153 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00055
    PF13720.1 24 kRrgfskeeikalkkaykllyrsg.l.....tleealeeleeelaespeveelld 72
                 +R g+s++ei+++++a++l   +g +     +l+ a+++l   +a+++ + ++++
  MMETSP0890-20130614|11530_1 17 ERPGLSEDEIEEIREAFNLFDTDGsGtidpkELKAAMQSLGF-EAKNQTIYQMIS 70
                 689**************9987766344444444444444444.444555555544 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.068
    PF13720.1  27 gfskeeikalkkaykllyrsgl..tleealeeleeelae...speveelld 72 
                    +k++ + ++k+++l   ++    +  +l+++++el+e   ++e++e+++
  MMETSP0890-20130614|11530_1  93 MSDKDTREDIQKVFNLFDDDQSgfITLRNLKRVAKELGEtmsDAELMEMIE 143
                  455677778888888776533223333445555555555333666666665 PP

>> PF04760.10  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.01        10      39      52 ..      21      34 ..      20      35 .. 0.92
   2 ?    4.7   0.0      0.02        21      15      34 ..      44      62 ..      42      66 .. 0.80
   3 ?    1.4   0.1      0.21   2.3e+02       9      22 ..     125     140 ..     122     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.01
   PF04760.10 39 Ldeetaellaeefg 52
                 L+e+++e+++e+f+
  MMETSP0890-20130614|11530_1 21 LSEDEIEEIREAFN 34
                 9***********97 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.02
   PF04760.10 15 vkskeiikkLfkelGievks 34
                 +++ke+ + + ++lG+e k+
  MMETSP0890-20130614|11530_1 44 IDPKELKAAM-QSLGFEAKN 62
                 6889998888.88***9766 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.21
   PF04760.10   9 LAkelg..vkskeiik 22 
                  +Akelg  ++ +e+++
  MMETSP0890-20130614|11530_1 125 VAKELGetMSDAELME 140
                  79***98888888887 PP

>> PF04876.7  Tenuivirus major non-capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0013       1.4      86     124 ..      66     104 ..      54     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0013
    PF04876.7  86 eellgaedetenslidlgkflkllqdklGdWitknylkh 124
                   ++++ +d++ ++ id+ +fl+++  k+ d  t++ +++
  MMETSP0890-20130614|11530_1  66 YQMISDIDKDGSGAIDFEEFLDMMTAKMSDKDTREDIQK 104
                  57999999999****************999888765555 PP

>> PF05099.8  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.27   2.8e+02      56      73 ..      19      36 ..      15      41 .. 0.71
   2 ?    9.2   0.0   0.00081      0.85      38      99 ..      42     102 ..      39     109 .. 0.89
   3 ?    1.0   0.1      0.27   2.9e+02      68     101 ..     104     143 ..      95     162 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.27
    PF05099.8 56 ygldpeeakalielfeea 73
                  gl+++e ++++e+f+  
  MMETSP0890-20130614|11530_1 19 PGLSEDEIEEIREAFNLF 36
                 567778888888888765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00081
    PF05099.8  38 gqvteeEiqairellrsrygldpeeakalielfeeaeeeaadleeftralkdafd.yeerlal 99 
                  g+++++E +a ++ l   ++ ++++  ++i   ++  + a+d+eef + + ++++ +++r+++
  MMETSP0890-20130614|11530_1  42 GTIDPKELKAAMQSL--GFEAKNQTIYQMISDIDKDGSGAIDFEEFLDMMTAKMSdKDTREDI 102
                  899************..99999****************************9999956666655 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.27
    PF05099.8  68 elfeeaeee......aadleeftralkdafdyeerlalle 101
                  ++f+   ++         l +++++l ++++++e+ + +e
  MMETSP0890-20130614|11530_1 104 KVFNLFDDDqsgfitLRNLKRVAKELGETMSDAELMEMIE 143
                  4444444443334444456666777777766666666655 PP

>> PF11814.3  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.16      33      73 ..      23      63 ..      14     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
    PF11814.3 33 seElklWReattifmtsGhGGcsplGLalaaarrGfevevl 73
                 ++E++  Rea  +f t G G  +p+ L  a ++ Gfe++  
  MMETSP0890-20130614|11530_1 23 EDEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQ 63
                 6789999******************************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       935  (0.0683879); expected 273.4 (0.02)
Passed bias filter:                      756  (0.0552955); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.49s 00:00:01.00 Elapsed: 00:00:00.89
# Mc/sec: 452.35
//
Query:       MMETSP0890-20130614|11575_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.82
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|11613_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-28   97.6   0.0      9e-28   97.2   0.0    1.1  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   6.6e-32     9e-28      14     158 .]      10     188 ..       5     188 .. 0.90

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 6.6e-32
                  CTTBGGGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHH.HCC...CCEEEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT.............................SS.CHHHHHHHHHHHHHHHHH.HCTTTSEEEEEE-TTHHHHH CS
   PF00300.17  14 kegrlqgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaei.lle...eldipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp.............................egesladvyeRvapfleelie.akdkgenvlivsHggvlral 158
                  +++r++gw dvp t kG+ qa  +gk Lk+++lq+++++tS l+Ra  T+++ l+     ++++i q +rL+er++ge+ gl+k +++ e +    + +r+++e++pp                             +ges+a++++R++pf+ + i    + g+++l+v+H+++lral
  MMETSP0890-20130614|11613_1  10 TNERFTGWVDVPCTRKGESQAITAGKTLKESGLQVQVAFTSLLQRASRTLDLaLAScasPKECEIVQSWRLNERHYGELCGLNKLQTAREMDPVLVHEWRRSWEVAPPemlpshplydsiynhpayqnldvpieqlpRGESVAQCAARLEPFWFSNIVpSIRAGKTTLVVAHANSLRAL 188
                  5679*********************************************9995555554555***************99988887777777767777777799999999*******************************************9777666******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 1167.26
//
Query:       MMETSP0890-20130614|11614_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-22   77.8   0.0    1.3e-21   76.2   0.0    1.9  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
      6e-20   71.2   0.0    1.2e-19   70.2   0.0    1.5  1  PF00072.19 Response regulator receiver domain
  ------ inclusion threshold ------
       0.49    9.9   4.9        0.2   11.1   0.5    2.6  3  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0     3e-25   1.3e-21       1     110 [.     133     288 ..     133     289 .. 0.98

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 3e-25
                  SHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEC.............................................TCEEEEEEE-----THHHHHHHCSTTTCCSC.SSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEEEEEEC CS
   PF02518.21   1 gdedrlrqivselvdNavkateesgeievrvkree.............................................gelvieVeDnGiGipeedlervfepffqtdd.dsrkvggtGlGlsivkklvellggeieveskeggGttvtlrlpl 110
                  gd +r+  ++ ++++Na+k+++ +g++ ++++ ++                                               l ieV+DnG+Gi+ +d+ ++f+pf q ++ + ++  g+GlGl+i+k+ +e++gg+i +es +g G+t+ +++pl
  MMETSP0890-20130614|11614_1 133 GDHRRIANCIGNFCSNALKFSTSGGQVLLHASLYDnvqdsdclnfppsstisssvpetkdcdiignnrddddddhskkraIGLKIEVRDNGCGIDFNDQRTLFQPFSQIRPgELQQGRGSGLGLAISKESIERHGGSIGLESTPGVGSTFFIHVPL 288
                  5789999*********************************************************************************************************9****************************************997 PP

>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   2.6e-23   1.2e-19       2     108 ..     328     444 ..     327     448 .. 0.94

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 2.6e-23
                  EEESSSHHHHHHHHHHHHHTTSEEEEEESSSHHHHHHH...........HHHHESEEEEESS-TT----HHHHHHHHHTTTSEEEEEES-TTHHHHHHHHHTT-SEEEESS--HHHHH CS
   PF00072.19   2 livdDeplvrellrqalekegyeevaeaddgeealell...........kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                  l+vdD  ++r+l+r+ +e+ g+ +v+ea+dg  a+e++           k++++D+i++D  mp+m+G e+++ +r ++ k+  i+vt+++ eed+   l+aGa+++l+Kp+++++l 
  MMETSP0890-20130614|11614_1 328 LVVDDVFSNRRLFRRQIERLGF-SVTEAEDGITAIEKCgysvtdddytnKNSQYDVIFMDSVMPRMSGPEATSILRHRGCKTILIAVTGNALEEDVRSFLEAGANEVLTKPVSKSKLQ 444
                  89********************.***************998877777666666***********************************************************999885 PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.41   1.9e+03     100     119 ..      31      50 ..      15      87 .. 0.62
   2 ?   -3.6   0.0       1.6   7.1e+03      13      29 ..     102     123 ..      94     128 .. 0.53
   3 ?   11.1   0.5   4.5e-05       0.2      32      78 ..     213     257 ..     167     332 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.41
    PF13589.1 100 tltldvekiekeekwdlkel 119
                  ++ ++ ++ +++e+ +lk++
  MMETSP0890-20130614|11614_1  31 VNDVSKNNYDDDEEYNLKKK 50 
                  33333334444444444444 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.6
    PF13589.1  13 Nsld.....Adatnvkisided 29 
                  N+       A+ ++++i+++ d
  MMETSP0890-20130614|11614_1 102 NAQAthlptAEEKQISIEVHID 123
                  4444333335555566655544 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 4.5e-05
    PF13589.1  32 ekseisieDnGkGmskeelvnalklgrsskdeekeektlGrkGiGmk 78 
                     +i++ DnG G++ ++ +  +++ ++ +   + ++ +G  G+G+ 
  MMETSP0890-20130614|11614_1 213 IGLKIEVRDNGCGIDFNDQRTLFQPFSQIRPG-ELQQGRG-SGLGLA 257
                  34799******************999987764.2333333.455532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.80
# Mc/sec: 1356.94
//
Query:       MMETSP0890-20130614|11616_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-34  115.0   0.0    1.7e-17   62.7   0.0    2.4  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    3.8e-28   97.1   0.0    8.1e-14   51.2   0.0    2.4  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    5.4e-08   32.4   0.0    0.00025   20.7   0.0    2.3  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   3.1e-17   1.4e-13       1      66 [.     407     471 ..     407     472 .. 0.97
   2 !   62.7   0.0   3.7e-21   1.7e-17       1      70 []     500     569 ..     500     569 .. 0.99

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 3.1e-17
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETT CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklgg 66 
                  +f  +Lp+ ++e+e++e+++++G+iesi+l+ d++grs g+a+V+F++ +  e+ l+ +ng+++ +
  MMETSP0890-20130614|11616_1 407 VFLQGLPWRANENEVREFLKDCGEIESIELPLDSNGRSSGTAYVTFTELDGYENGLQ-MNGQTFAD 471
                  799******************************************************.****9975 PP

  == domain 2    score: 62.7 bits;  conditional E-value: 3.7e-21
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  +fVgn +++++ee L+  F ++G i+s++  +d etg  +gf+ V+F+s+e+a++A++ l g+++ gr ++
  MMETSP0890-20130614|11616_1 500 IFVGNMSWEIDEESLRAAFADCGTITSVRFATDrETGDFRGFGHVDFDSPEAAAAAVA-LAGTEVCGRAIR 569
                  8*********************************************************.*********986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   4.2e-15   1.9e-11       1      63 [.     407     469 ..     407     477 .. 0.91
   2 !   51.2   0.0   1.8e-17   8.1e-14       1      69 []     500     569 ..     500     569 .. 0.98

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 4.2e-15
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkklnlvl 63 
                  +++ glp+ ++e ++ref++++g +e++++p++ +gr++g+A+v+f   +  ++ l+++++ +
  MMETSP0890-20130614|11616_1 407 VFLQGLPWRANENEVREFLKDCGEIESIELPLDSNGRSSGTAYVTFTELDGYENGLQMNGQTF 469
                  7999*****************************99***************9999999998776 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 1.8e-17
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                  ++v++++++++ee lr+ f+++g++++vr+  ++  g +rgf+ v+f+s+e+A +a++  ++ + gr ir
  MMETSP0890-20130614|11616_1 500 IFVGNMSWEIDEESLRAAFADCGTITSVRFATDREtGDFRGFGHVDFDSPEAAAAAVALAGTEVCGRAIR 569
                  89*****************************************************************997 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00016      0.73       2      53 ..     422     478 ..     421     478 .. 0.85
   2 !   20.7   0.0   5.4e-08   0.00025       1      56 []     514     573 ..     514     573 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
    PF13893.1   2 yklfskfGkverikifrkk....ggqAfvefdtveaArkakeylngvkl..ygktLkv 53 
                  ++++  +G++e+i +  ++    +g+A+v+f  ++  ++ ++ +ng+ +   g+++k+
  MMETSP0890-20130614|11616_1 422 REFLKDCGEIESIELPLDSngrsSGTAYVTFTELDGYENGLQ-MNGQTFadSGRWIKI 478
                  6778889********666669988*****************5.9**999766789987 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 5.4e-08
    PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  L++ f+ +G+++++++  +      +g++ v fd++eaA  a+ +l g+  +g+ ++++++
  MMETSP0890-20130614|11616_1 514 LRAAFADCGTITSVRFATDRetgdfRGFGHVDFDSPEAAAAAV-ALAGTEVCGRAIRCDFA 573
                  6778999*********99999***99*****************.5*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1552  (0.113517); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                       235  (0.0171884); expected 13.7 (0.001)
Passed Fwd filter:                       116  (0.00848449); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 7.10u 0.55s 00:00:07.65 Elapsed: 00:00:03.77
# Mc/sec: 407.44
//
Query:       MMETSP0890-20130614|11615_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-08   31.7   0.0    1.5e-07   30.7   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00028   20.7   0.0    0.00042   20.1   0.0    1.3  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.023   14.4   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.4e-11   1.5e-07       4      63 ..     108     166 ..     107     174 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 3.4e-11
                  ESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEB CS
   PF00076.17   4 gnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkk 63 
                  +++p+ + e+ +k  +++fG  + +++++d + ++ + + Ve+es+e+a++A+++ +g  
  MMETSP0890-20130614|11615_1 108 KGFPSAMGEDMIKISLEEFGTLKAFSVKID-DTSPECSGVVEYESQESADSAVAKWDGAD 166
                  5899*************************8.99**********************99954 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   9.1e-08   0.00042       4      60 ..     108     163 ..     105     174 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.1e-08
    PF14259.1   4 rglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln 60 
                  +g+p+ + e+ ++  ++++g+++  +++ +  + + + + ve+es+e+A+ a++k +
  MMETSP0890-20130614|11615_1 108 KGFPSAMGEDMIKISLEEFGTLKAFSVKIDD-TSPECSGVVEYESQESADSAVAKWD 163
                  89**************************974.79******************99854 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     5e-06     0.023       7      55 ..     125     177 ..     123     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5e-06
    PF13893.1   7 kfGkv..erikifrkk.ggqAfvefdtveaArkakeylngvkl.ygktLkvey 55 
                   fG+    ++ki +++  + + ve+++ e+A+ a+++ +g+++  g +L  ey
  MMETSP0890-20130614|11615_1 125 EFGTLkaFSVKIDDTSpECSGVVEYESQESADSAVAKWDGADMgMGSKLSLEY 177
                  56665323578888887799********************9996666776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 824.90
//
Query:       MMETSP0890-20130614|11617_1  [L=1197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-48  163.4   0.1    7.2e-48  162.5   0.1    1.5  1  PF00122.15 E1-E2 ATPase
    3.1e-45  155.1   0.7    6.3e-45  154.1   0.1    1.9  2  PF00702.21 haloacid dehalogenase-like hydrolase
    8.8e-23   80.1   7.8    3.1e-09   36.7   0.4    4.5  4  PF00403.21 Heavy-metal-associated domain
    1.1e-14   54.9   0.0      4e-14   53.0   0.0    1.9  2  PF12710.2  haloacid dehalogenase-like hydrolase
     0.0032   16.9   0.1     0.0098   15.3   0.1    1.7  2  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.1   2.6e-51   7.2e-48       2     230 .]     462     722 ..     461     722 .. 0.94

  Alignments for each domain:
  == domain 1    score: 162.5 bits;  conditional E-value: 2.6e-51
   PF00122.15   2 iilavllnalvefvqeykaekalesLkrlspetaatvird........................gkeqei.pakeLvvGDiviiktGdrvpaDgrlie....agslevdesalTGEslpvtksvelaergnkvfsgtvvlsgegkaiVtatgketeigkiarlvqeaksaetplqkkldrlaklllilvlavailifiislvt.........dvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiEt 230
                  ++l+v l+++++  q++ka  a+++L r++p+  a+v+ d                         + + + p  eL++GDiv++++G   p+Dg++ +      ++  desa+TGEslpv k      rg+ vf ++v++s  +   +t+tg+++ i +iar vq+a+ a++p+q+ +d +a+++++++l++a+++f+++ ++         d   ++l all++++++vva+P++L la++++ + g+++ a +g+l++ ++++E+
  MMETSP0890-20130614|11617_1 462 LLLFVSLGKYLKQQQKKKASGAIAALLRMQPKY-AVVLTDvyhdpleelseddehfyrtlvsssDTTTSVrPCAELRPGDIVLVEPGGAAPTDGIVAAslsaRREAFLDESAMTGESLPVRKV-----RGDSVFGSSVNRSSAFVQLITQTGAKSAIAQIARIVQDAQLAKAPVQEYADAVASVFTPAILTLALITFLFWYFVattgmifslDARTPFLFALLFGVSVVVVACPCALGLATPTAVMCGTAVGASRGILIKGGDVLEQ 722
                  7899****************************9.99999989999999998888888888876534444569*************************8544445*******************.....***************************************************************************************************************************************9995 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         3   8.3e+03      98     141 ..     605     650 ..     555     651 .. 0.67
   2 !  154.1   0.1   2.3e-48   6.3e-45       1     203 [.     726     997 ..     726     998 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3
                  HHHHHHHHHHHHHHHHHHHHTGEBHHHHHHHHHHHHHTTC..EEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
   PF00702.21  98 skgrtvvvlaqaralgviafadpvkpeaaeavasLkaagi..vvll 141
                  ++g+ +++ + ar++++   a  + +e a+avas+    i  ++l+
  MMETSP0890-20130614|11617_1 605 QTGAKSAIAQIARIVQDAQLAKAPVQEYADAVASVFTPAIltLALI 650
                  3344444444577777777777777777777777666666655555 PP

  == domain 2    score: 154.1 bits;  conditional E-value: 2.3e-48
                  ECEEEEECCTTTBETHHHH...................HHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH....CEECTCCHCCEECEEEE...EE..HHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH.....HHHHHHHHHHTGEBHHHHHHHHHHHHHTTC..EEEEESSCHHHHHHHHHHTTC.SEEEEHHHTTSHHHHHHHHHHHTS................................-GGGEEEEESSCTTHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx...xx..xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxx RF
   PF00702.21   1 iktvvfDktGTLtegepsv...................lgnkaalalaaaletgsehpigkavvaaakanstr....tgfatfigrgvsgkvdg...av..gnpewmtalglrviapdlvaaeg...qskgrtvvvla.....qaralgviafadpvkpeaaeavasLkaagi..vvlltgdnpetaeaiakqagi.dslvfaevkPepklfvaaieeLqi................................dpgevamvGDgvnDapalaaA 203
                  +++vvfDktGTLt+g+p+v                   ++   +l+ aa++e +sehp+gka+va + + s      ++ +t++g+gv++  ++    v  g  +++ ++  +++++dl+a++     ++ +tvvv+a       +algv+++ad ++pea++++a+L++     v +ltgd++ ta+aiakq g+  + v+a+vkP++k   a i +Lq                                 d+ +vamvGDgvnD+pala A
  MMETSP0890-20130614|11617_1 726 VDVVVFDKTGTLTTGKPKVtdlipfsrtcsseidasddASSLFLLRCAASAELNSEHPVGKAIVALSHERSAHsfpvESSETVPGQGVTAILSNglgSVcvGSLNMVCEILDDPKQSDLIAQIAarlRREAKTVVVCAheekkKWYALGVFGIADAPRPEAKHTLAALQKYLKcqVRMLTGDHETTAHAIAKQIGLePNSVVAGVKPAEK--AAYISKLQRigpkrpesvlnffgncfstkkkpaartqnttiDGCIVAMVGDGVNDSPALATA 997
                  689******************************************************************6655****999****************94456********************999998999999999995555559*************************9557***********************777**********..9*******99***************************9998888****************88 PP

>> PF00403.21  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.1e-08   0.00022       2      61 ..       7      68 ..       6      69 .. 0.88
   2 !   18.9   0.1   4.2e-07    0.0012       2      62 .]      81     141 ..      80     141 .. 0.91
   3 ?    4.7   0.0     0.012        32      13      45 ..     191     223 ..     180     234 .. 0.89
   4 !   36.7   0.4   1.1e-12   3.1e-09       4      62 .]     264     326 ..     262     326 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 8.1e-08
   PF00403.21  2 vrvpgmhC.agCaakvekalselpgVysvkvdlgkkkvvVegdiee.kllrkliekvekagy 61
                 + ++gm C a+C a+ve+al  + gV+s++ +++ +++ V+   +  k+ + l+ +ve +g+
  MMETSP0890-20130614|11617_1  7 LEIEGMMCqASCGATVESALNDVIGVESAEASYARSEAIVKWRSDTlKNENLLVDAVEAVGF 68
                 6799****668*******************************77776776669999999887 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4.2e-07
   PF00403.21   2 vrvpgmhC.agCaakvekalselpgVysvkvdlgkkkvvVegdieekllrkliekvekagye 62 
                  + ++gm C a+C  +v++al+ ++g +s+ v++  + ++Ve d++  + ++l+++ve +g++
  MMETSP0890-20130614|11617_1  81 LSIQGMMCqASCGTTVRSALLGVKGCRSAQVSYPLGCAEVEIDENV-NENDLVQAVEAVGFD 141
                  67899***668*******************************9997.5588******99986 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.012
   PF00403.21  13 aakvekalselpgVysvkvdlgkkkvvVegdie 45 
                  a+ ++++++++ gV+ ++++lg+ ++ + ++++
  MMETSP0890-20130614|11617_1 191 AQSIKTQVEACRGVRRCDMSLGAARMILSHEPS 223
                  789*******************99998888765 PP

  == domain 4    score: 36.7 bits;  conditional E-value: 1.1e-12
   PF00403.21   4 vpgmhCagCaakvekalselpgVysvkvdlgkkkvvVegdiee.kll..rk.liekvekagye 62 
                  v+gm+Ca+C +kve+al++l+ V ++ v+  ++++ V  +++   +   +k li +++++g++
  MMETSP0890-20130614|11617_1 264 VEGMSCAACSSKVERALKKLEFVDEAAVSSTTHRAKVIMNESLgSKEesEKiLIDTIHSLGFK 326
                  89*************************************776655544444699999998875 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.98   2.7e+03      85     135 ..     500     543 ..     445     575 .. 0.69
   2 !   53.0   0.0   1.5e-17     4e-14       1     190 [.     729     994 ..     729     995 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.98
                  ...H--BHHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--G CS
    PF12710.2  85 klfegfipdaaellkelheaglrvvvlsgdprliakpvakelgidevnvla 135
                   ++ + +    e+l+e  e  +r+ v s d +  ++p+a el  ++  ++ 
  MMETSP0890-20130614|11617_1 500 DVYHDPL----EELSEDDEHFYRTLVSSSDTTTSVRPCA-ELRPGD--IVL 543
                  3556666....8887755557778889999999999998.555444..444 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 1.5e-17
                  EEE------B---......................HHHHHHHHH--H.........HHH.................................................................HHHHHHHHHHHHT....-..HHHH----HHHHHHHHHH.......H--B.......HHHHHHH........HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-.----HH----HHHHHHHHHSHHHHHH.........................HH---T.T----S--EE---GGGHHHH CS
    PF12710.2   1 avFDkDGTLtedd...tdflryllk..........lldvlgealakdasl......aslkdst.........................................................cltlsdpkdllellaey....g..girviglaarylealakeieeaklfegfi.......pdaaellkelhea..glrvvvlsgdprliakpvakelgidevnvlatel.edegggkvdgritgkldgKaraverl.........................vvlayk.qvggrivvaiGDsanDlpal 190
                  +vFDk+GTLt+++   td++++             +           +sl      a     +                                                         c++l+dp +  +l+a +    +    +v+ +a+++ ++++          g++       p+a+ +l++l ++  ++ v +l+gd + +a ++ak+ g+++ +v+a     +                Ka+++++l                           + +  +++g iv+++GD+ nD pal
  MMETSP0890-20130614|11617_1 729 VVFDKTGTLTTGKpkvTDLIPFSRTcsseidasddA-----------SSLfllrcaA-----SaelnsehpvgkaivalshersahsfpvessetvpgqgvtailsnglgsvcvgslnmvCEILDDP-KQSDLIAQIaarlRreAKTVVVCAHEEKKKWYA--------LGVFgiadaprPEAKHTLAAL-QKylKCQVRMLTGDHETTAHAIAKQIGLEPNSVVAGVKpAE----------------KAAYISKLqrigpkrpesvlnffgncfstkkkpAARTQNtTIDGCIVAMVGDGVNDSPAL 994
                  79***********88877777777777644444332...........2222332331.....023333556678888888999999999**************************************.444444444332314556677777777777765........666666666688888999997.5548999***********************99888877442................55555555555555555555556666666666644445669*****************98 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   4.5e+03     114     169 ..     229     289 ..     185     305 .. 0.66
   2 !   15.3   0.1   3.6e-06    0.0098     200     242 ..     976    1018 ..     967    1024 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.6
                  HHHHHHHCCCTSCEEEES-HCCHS-S--SEEE.EE--GGGHHHHHHHHHCCTTTTC....E CS
    PF08282.7 114 ekkakeeeknkkkkeekkeeeelededinkil.iledkedldelekelkeelnkli....t 169
                    ++ + +  ++ +++  ++++++d+d  k++ +  +  ++ ++ +++++ l+kl     +
  MMETSP0890-20130614|11617_1 229 LCRTLQLRGCENISLQMIDDDDDDDDDNQKVIyLGVEGMSCAACSSKVERALKKLEfvdeA 289
                  5566667777888888888888888888888866666667777777777777665344543 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3.6e-06
                   --GGGEEEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE- CS
    PF08282.7  200 isleeviafGDgeNDieMLelaglgvAmgnaspevkaaAdyvt 242 
                   i+   v+ +GDg ND + L  a +g+A+g +++ +++aAd v 
  MMETSP0890-20130614|11617_1  976 IDGCIVAMVGDGVNDSPALATAHVGIAIGGGTQVAIEAADVVL 1018
                   555668899*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.62u 0.38s 00:00:02.00 Elapsed: 00:00:01.09
# Mc/sec: 2631.60
//
Query:       MMETSP0890-20130614|11625_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   21.1   0.9    0.00037   20.1   0.6    1.5  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6   2.7e-08   0.00037       5     249 ..      50     256 ..      48     260 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.7e-08
    PF03567.9   5 vapddkivfcrvpKvasttfkrvlvrligkkctcnrrsinetwlfsrrstgwscglfadltelssteipkrldkyfkfifvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwapacdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktq......tanttrrsnstrasevevdlseklrq..rleelYelDfel 249
                  v+  + + f+++pK+++t++ ++  + +g           ++w + +rs+       ++ t  s  ++p+++ + ++f  +R+P + ++  + +  +  ++  +++        ++           + + + ++++  n++    + + h  p+++  + +  ++    ++e+l+ed++ +l       +++ a+ g   +++ ++      ++ ++ ++n t  +  +++l +k+ q  r  +lY  Df+l
  MMETSP0890-20130614|11625_1  50 VETVNMLHFLHIPKTGGTSVENLGHDALG-----------TSWGRFDRSLI------RNGTHCSVWHVPQKVLSGVSFCTLRNPATKFVGQFHHENEPTDY--CNN---A---TFD-----------KWTKTALMKFEENPY----YYDCHYLPQVQYAHFCDYRL----RFEHLNEDIRNLLTHYHF--ENGSAINGSFVIEQLKHepggpiQQAKRVKTNDTEIAICASQLAKKIEQntRFMRLYADDFRL 256
                  55667899******************999...........89998777665......4445555566644555599******************9987777..333...1...112...........356777888777888....68889888777554665555....789999999997777777..555555444444443335668887777777777777777777776665511445888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.61
# Mc/sec: 1044.97
//
Query:       MMETSP0890-20130614|11623_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.47s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 172.54
//
Query:       MMETSP0890-20130614|11624_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-60  197.3  30.5    2.1e-11   43.1   0.1    7.1  7  PF00400.27 WD domain, G-beta repeat
    0.00076   19.1   0.2      0.021   14.4   0.0    2.7  3  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.053   11.5   6.2        1.1    7.2   0.8    3.8  4  PF11715.3  Nucleoporin Nup120/160
      0.057   11.5   0.1        1.4    7.0   0.1    2.1  2  PF02239.11 Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   3.6e-11   1.2e-07       6      38 ..      10      43 ..       6      44 .. 0.95
   2 !   39.7   0.1   7.3e-14   2.5e-10       4      39 .]      58      93 ..      55      93 .. 0.94
   3 !   43.1   0.1   6.3e-15   2.1e-11       2      39 .]      98     135 ..      97     135 .. 0.95
   4 !   39.3   0.7   9.5e-14   3.2e-10       4      39 .]     143     180 ..     140     180 .. 0.92
   5 !   32.8   0.0   1.1e-11   3.6e-08       3      39 .]     186     222 ..     184     222 .. 0.94
   6 !   11.7   0.1   4.8e-05      0.16       2      39 .]     227     262 ..     226     262 .. 0.86
   7 !   18.4   0.5   3.8e-07    0.0013      14      39 .]     288     313 ..     286     313 .. 0.95

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 3.6e-11
                 EEESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27  6 tlrgHtspVtcvafspd.gpllasgSrDgtirlW 38
                 +lrgH+++Vt+++   + +++++s+SrD+t+ +W
  MMETSP0890-20130614|11624_1 10 ELRGHSDWVTSISTTAEnPNMIVSSSRDKTCMVW 43
                 79******************************** PP

  == domain 2    score: 39.7 bits;  conditional E-value: 7.3e-14
                 EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                  + l+gH+++V++v +s dg++ +sgS+Dgt+rlW+
  MMETSP0890-20130614|11624_1 58 RRALKGHSHFVSDVVISSDGQFALSGSWDGTLRLWE 93
                 6789*******************************6 PP

  == domain 3    score: 43.1 bits;  conditional E-value: 6.3e-15
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + ++ + gH++ V +vafs d + ++sgSrD+ti+lW+
  MMETSP0890-20130614|11624_1  98 KTTRRFVGHSKDVLSVAFSTDNRQIVSGSRDNTIKLWN 135
                  67899********************************7 PP

  == domain 4    score: 39.3 bits;  conditional E-value: 9.5e-14
                  EEEEESSSSSEEEEEEESS..STEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspd..gpllasgSrDgtirlWd 39 
                  + + +gHt +V+cv+fsp+   p+++s+++D+ +++W+
  MMETSP0890-20130614|11624_1 143 TISDEGHTEWVSCVRFSPSiqAPVIVSAGWDKLVKVWS 180
                  56679********************************7 PP

  == domain 5    score: 32.8 bits;  conditional E-value: 1.1e-11
                  EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + + l gHt+  + v +spdg+l+asg++Dg   lWd
  MMETSP0890-20130614|11624_1 186 LRTNLPGHTGYLNTVTVSPDGSLCASGGKDGVAMLWD 222
                  66889*******************************9 PP

  == domain 6    score: 11.7 bits;  conditional E-value: 4.8e-05
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + +++l++  + + ++ fsp++ +l+ +    +i++Wd
  MMETSP0890-20130614|11624_1 227 KRLYSLDAG-DVIHSLVFSPNRYWLCAATT-QCIKIWD 262
                  667788888.99*********888888888.******9 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 3.8e-07
                  EEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  14 VtcvafspdgpllasgSrDgtirlWd 39 
                  +t++++s +g +l +g  Dg ir W+
  MMETSP0890-20130614|11624_1 288 CTAICWSANGEVLYTGWTDGLIRCWH 313
                  89***********************6 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.079   2.7e+02     143     183 ..     107     141 ..      71     150 .. 0.58
   2 !   14.4   0.0   6.1e-06     0.021      62     194 .]     153     279 ..     139     279 .. 0.83
   3 ?   -0.4   0.0      0.21   7.2e+02     142     161 ..     284     303 ..     280     311 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.079
    PF08662.6 143 asnatlvewspdgryvlTattsprlrvdngfkiwsysGkll 183
                  +++  +v +s+d r +++ +       dn++k+w+  G+  
  MMETSP0890-20130614|11624_1 107 SKDVLSVAFSTDNRQIVSGSR------DNTIKLWNTLGECK 141
                  444445555555555554432......57777777776654 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.1e-06
    PF08662.6  62 ihdvaWspkskefaviyGkmpakislfdl.kvnvisklk..ekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkkiakaeasnatl.vewspdgryvlTattsprlrvdngfkiwsysGkllykkefdelyqv 194
                  + +v  sp+ +  +++    ++ +++++l ++++ ++l+  +++ Nt+  sp g l + +G     G   ++d ++ k + + +a +  + + +sp+  ++  att        ++kiw ++ k++      e+ qv
  MMETSP0890-20130614|11624_1 153 VSCVRFSPSIQAPVIVSAGWDKLVKVWSLtNCKLRTNLPghTGYLNTVTVSPDGSLCASGGKD---GVAMLWDLNEGKRLYSLDAGDVIHsLVFSPNRYWLCAATTQ-------CIKIWDLESKVVVDDLRPEFVQV 279
                  778888999999999999999999999995588888886225689**********99998865...55789************999876526799988888888888.......9**********999999999886 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.21
    PF08662.6 142 easnatlvewspdgryvlTa 161
                  + + +t + ws +g+ + T 
  MMETSP0890-20130614|11624_1 284 QVPYCTAICWSANGEVLYTG 303
                  56677888888888887775 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.3     1e+03     218     250 ..      18      47 ..       9      50 .. 0.72
   2 ?    3.6   0.0    0.0038        13     219     253 ..      69      99 ..      56     116 .. 0.78
   3 ?    7.2   0.8   0.00033       1.1     219     259 ..     111     146 ..     101     209 .. 0.78
   4 ?   -1.0   0.0     0.097   3.3e+02     241     258 ..     216     233 ..     207     252 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.3
    PF11715.3 218 aasldvsssevegqtfvftlsrDgkLRvWnlet 250
                  ++s++++    e+ +++++ srD++  vW l++
  MMETSP0890-20130614|11624_1  18 VTSISTTA---ENPNMIVSSSRDKTCMVWALNN 47 
                  44455555...7888999999999999998877 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0038
    PF11715.3 219 asldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  +++ +ss    + +f+++ s Dg+LR+W ++ g+ 
  MMETSP0890-20130614|11624_1  69 SDVVISS----DGQFALSGSWDGTLRLWEIASGKT 99 
                  4455555....88899999***********99988 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00033
    PF11715.3 219 asldvsssevegqtfvftlsrDgkLRvWnletgqclrttdi 259
                  +s+++s+    ++  +++ srD+++++Wn+ + ++ +t+ +
  MMETSP0890-20130614|11624_1 111 LSVAFST----DNRQIVSGSRDNTIKLWNTLGECK-YTISD 146
                  5666666....55555599***************9.66554 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.097
    PF11715.3 241 gkLRvWnletgqclrttd 258
                  g+  +W+l++g++l++ d
  MMETSP0890-20130614|11624_1 216 GVAMLWDLNEGKRLYSLD 233
                  555678888888877776 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0004       1.4      40      96 ..      69     126 ..      52     130 .. 0.86
   2 ?    2.3   0.0     0.011        37      30      74 ..     230     272 ..     201     295 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0004
                  EEEE---.--EEEEE---SEEEEEETTSSS.EEEEEE---B----EE--TTT-EEE-- CS
   PF02239.11  40 isrvfasdgRyvyvigRDgkltliDLwake.ivaevkaGlnarsvavSqedryvivgn 96 
                    +v +sdg +++  + Dg+l l ++   + + + v    +  sva S+++r ++ g+
  MMETSP0890-20130614|11624_1  69 SDVVISSDGQFALSGSWDGTLRLWEIASGKtTRRFVGHSKDVLSVAFSTDNRQIVSGS 126
                  557899*********************9995556688999**************9986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.011
                  EEE-------EEEE---.--EEEEE---SEEEEEETTSSSEEEEE CS
   PF02239.11  30 avlesgyalHisrvfasdgRyvyvigRDgkltliDLwakeivaev 74 
                    l++g ++  s vf++ +Ry + ++    +++ DL  k +v ++
  MMETSP0890-20130614|11624_1 230 YSLDAG-DVIHSLVFSP-NRYWLCAATTQCIKIWDLESKVVVDDL 272
                  445544.4444888888.899999988888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.84
# Mc/sec: 898.63
//
Query:       MMETSP0890-20130614|11622_1  [L=878]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-58  194.7   0.1    1.4e-57  194.0   0.1    1.4  1  PF00009.22 Elongation factor Tu GTP binding domain
    6.1e-33  112.8   0.0    1.5e-32  111.5   0.0    1.7  1  PF03764.13 Elongation factor G, domain IV
      2e-20   72.3   0.0    5.2e-20   71.0   0.0    1.8  1  PF00679.19 Elongation factor G C-terminus
    1.2e-14   54.0   0.3    1.1e-13   50.9   0.0    2.5  2  PF03144.20 Elongation factor Tu domain 2
    4.5e-05   23.2   0.2    0.00024   20.9   0.1    2.1  1  PF01926.18 50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.1   5.1e-61   1.4e-57       2     184 ..      18     374 ..      17     378 .. 0.84

  Alignments for each domain:
  == domain 1    score: 194.0 bits;  conditional E-value: 5.1e-61
                  GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE.................................................T...ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHH.....................HHHCTTGCTCGEEEEEE-STCCHHHH............................................................................................................HHHHHHHH CS
   PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle.................................................k..etkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekl.....................lekylekgeeevpvvpgSalkgegid............................................................................................................aLleaive 184
                  +ir +++i+hvDhGK+Tltd+l++kag+i++  ++a+++r++d++++e ergiTiks+ is++                                                    +++++linl+D+PGHvdFs+ev+++lr++Dga++vvd  eGv++qTe+vlr+a +++vk+++ +NK+Dr+  el+  +e++++ +                     ++ y+ekg+    v +gS+l+++g+                                                                                                             a+le+iv 
  MMETSP0890-20130614|11622_1  18 NIRSMSVIAHVDHGKSTLTDSLVAKAGIIAQ--KHAGETRYTDTRADEAERGITIKSTGISMYfeylmsdadraevsasegravkvtggsdeavesaektnsitesedqqsgPslSENSYLINLVDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAINERVKPVLHVNKVDRALLELQLSPEDMYQSFaraiesvnviiatyndellgdCQVYPEKGT----VSFGSGLHQWGFTlckfarmysekfgisydkmmlklwgdnyfdskgkkwvkndkdgtlerafcqfimspickmfaaimedkkakiqkllkvvgvtlkkdeeelsgkpllkrvmqkwlpvgdAILEMIVV 374
                  799***************************9..5557799***********************************************************9999998877655167*************************************************************************************999999999999999999988888888886....**********98877777777777777777777777777777777777777777777777777777776666666666666666666666666666666666666666666666666555555555555 PP

>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.0   5.6e-36   1.5e-32       2     120 .]     641     757 ..     640     757 .. 0.97

  Alignments for each domain:
  == domain 1    score: 111.5 bits;  conditional E-value: 5.6e-36
                  EEB-----SS-EE.E-----------------EEEEEE------EEEE--------GGGHHHHH---TTTT-----------SEEEEEEE----T..TT--HHHHHH---HHHHHHHH--- CS
   PF03764.13   2 qVayretigkdvkerekklkkqsggdgqyakvilriePlegggnefvdetkggqvpkefkeavekGfqealkeGplagepvtdvkvtLtdgslhe..vdsseaafkpaarralkeallkAk 120
                  +++ r    +d+k r++ +++ +g+d  +a++i++++P+  g+n + d tkg++++ e+ke+v +Gfq+a k+ +l++e+++ v ++L+d++lh+  ++++ ++++p+arr++ +++l+A+
  MMETSP0890-20130614|11622_1 641 KISAR----DDPKVRARAMADDYGWDVTEARKIWSFGPDGSGPNLVYDVTKGVNYLLEIKESVAAGFQWAAKQSVLCDEQMRSVCFKLMDVTLHAdaIHRGMGQIMPTARRVIFASMLTAS 757
                  66777....999***********************************************************************************************************95 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   1.9e-23   5.2e-20       2      87 ..     760     846 ..     759     848 .. 0.97

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 1.9e-23
   PF00679.19   2 llEPimeveievpeeylgkvisdltkrrGeilsmena.genrvvieaevPlaeligysteLrslTsGrgsfslefsgYepvpgekle 87 
                  l EP++ v+i+vp++ +g  ++ lt+rrG + s e++ g+ +v ++a++P+ e++g+++++r++T G++  ++ fs+++ ++g++l+
  MMETSP0890-20130614|11622_1 760 LQEPVFLVDISVPQDAMGGCYGVLTRRRGVVFSEEQRpGTPMVQMKAHMPVMESFGFNADVRAATGGKAFPQMVFSHWQSMNGDPLD 846
                  79***********************************9999******************************************9987 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33   8.9e+02       3      42 ..     153     195 ..     151     231 .. 0.77
   2 !   50.9   0.0     4e-17   1.1e-13       3      73 ..     431     505 ..     429     506 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.33
                  EEEEEEEE--EETTEEEEEETTTCTEEE......EEEEEEEEEETT CS
   PF03144.20   3 vatgrvysGtlkkGdtvrilgndtskke......ivtrvrsletfn 42 
                  +a  r+ +G l + dt++ +  +t   e      i +rv+ ++  n
  MMETSP0890-20130614|11622_1 153 TAALRITDGALVVVDTIEGVCVQT---EtvlrqaINERVKPVLHVN 195
                  6789*************9977544...4456777777777766664 PP

  == domain 2    score: 50.9 bits;  conditional E-value: 4e-17
                  EEEEEEEE--EETTEEEEEET.TTCTEEE...EEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
   PF03144.20   3 vatgrvysGtlkkGdtvrilg.ndtskke...ivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                   a+grv+sG++  G++vri+g n++++k+    v  +++++ ++g+++e+v+  +aG++++++g+++ + k+ t+
  MMETSP0890-20130614|11622_1 431 FAFGRVFSGKIATGQKVRIMGpNYVPGKKsdlWVKNIQRTLIMMGRVQEQVQDIPAGNTCGLVGVDQYLLKSGTI 505
                  59*****************************************************************66665565 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   8.9e-08   0.00024       9     110 ..      29     192 ..      22     197 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.9e-08
                  T---HHHHHHHHCSTCTEETS-TT-SSSE.SEEE..............................................................EETTE...........EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS...HHHHHHHHHHHHH.HTCCCEEE CS
   PF01926.18   9 NvGKStLinaLtgekaakvsdypgtTrdi.tene..............................................................vkkek...........iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa...vlkeadkellnel.eakkplil 110
                    GKStL  +L+ +   + ++++g+Tr + t+ +                                                                  +           i+lvD PG +         ++ ++++++++ +d++l+vvd+ +   v++e   ++l++  +++++ +l
  MMETSP0890-20130614|11622_1  29 DHGKSTLTDSLVAKAGIIAQKHAGETRYTdTR-AdeaergitikstgismyfeylmsdadraevsasegravkvtggsdeavesaektnsitesedQ---QsgpslsensylINLVDSPGHV---------DFSSEVTAALRITDGALVVVDTIEgvcVQTE---TVLRQAiNERVKPVL 192
                  67**********8777799999*******444.3467889999999999999999999999999999999988888888877776666665444440...13333444455567******65.........4667789999***********4444543333...443333233344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.25u 0.42s 00:00:01.67 Elapsed: 00:00:00.93
# Mc/sec: 2262.37
//
Query:       MMETSP0890-20130614|11628_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-34  118.5   0.3    1.4e-34  118.0   0.2    1.2  1  PF00237.14 Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
        5.1    7.1  10.4      0.097   12.6   2.4    1.7  2  PF02067.10 Metallothionein family 5


Domain annotation for each model (and alignments):
>> PF00237.14  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.2     2e-38   1.4e-34       2     104 ..      40     175 ..      39     176 .. 0.98

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 2e-38
   PF00237.14   2 klknlriSpkkarevadlirgkkveeAlaiLefv..................................pkkaakivlklLksaeanaennkgldpdklvikeiavnkgptlkrirprArGRatpinkrtshieivla 104
                   ++ lr+++k++rev+++i+g+k+ +A+++Le+v                                  p+ka+ki+l+lL +aeanae  kg+d+++lv+k++++n++p+ +r+++rA+GR++p+ +++ hieivl+
  MMETSP0890-20130614|11628_1  40 CGSSLRCHFKHCREVCNCIKGMKIGKAKKYLEDVlnykraikftkftggvgrhaqgksikapgdkvrwPQKATKIILDLLINAEANAE-MKGIDVEDLVVKHAQANRAPKQRRRTYRAHGRINPYMSSPAHIEIVLT 175
                  56789**********************************************************************************9.**********************************************97 PP

>> PF02067.10  Metallothionein family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       1.1   7.2e+03      18      23 ..      12      17 ..      10      21 .. 0.54
   2 ?   12.6   2.4   1.4e-05     0.097       4      31 ..      38      65 ..      36      70 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.1
   PF02067.10 18 kdsCaC 23
                 kds  C
  MMETSP0890-20130614|11628_1 12 KDSDCC 17
                 444444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.4e-05
   PF02067.10  4 kGCGsnCkCaaQktkdsCaCnkDCkCvg 31
                 k CGs  +C  + +++ C+C k  k + 
  MMETSP0890-20130614|11628_1 38 KACGSSLRCHFKHCREVCNCIKGMKIGK 65
                 78******************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.82
# Mc/sec: 610.78
//
Query:       MMETSP0890-20130614|11626_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-60  204.7   0.0    1.4e-60  204.3   0.0    1.2  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
    7.7e-15   55.2   0.0    1.5e-14   54.2   0.0    1.5  1  PF00306.22 ATP synthase alpha/beta chain, C terminal domain
    6.7e-10   38.9   0.4    1.4e-09   37.9   0.3    1.6  1  PF02874.18 ATP synthase alpha/beta family, beta-barrel domain
  ------ inclusion threshold ------
      0.058   13.1   0.1       0.12   12.1   0.1    1.5  1  PF09378.5  HAS barrel domain


Domain annotation for each model (and alignments):
>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.0   4.1e-64   1.4e-60       1     215 []     155     381 ..     155     381 .. 0.98

  Alignments for each domain:
  == domain 1    score: 204.3 bits;  conditional E-value: 4.1e-64
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00006.20   1 tgirvlDslfPivqGqttlipGafgcGktvisqslskns.............nsdaiiyvgiGergnevaevleefrkepimkrttlvantsnepvaareasiytgitlAeyfrd.qgknVlliaDslsrwaealreisgrlgempadqgypaylgaklaslyeRagkagspdriGSvtivaavspaggdfsdpvttstlgitdvfivLdkklaqrkhfPaintlvSyS 215
                  tgi+++D++ +i++Gq++ +++a+g++++ +++++++++             ++ a ++ ++G + ++++ + ++f+++++m+rt+l++n +n+p+ +r++++++++t+Aey+++ +  +Vl i++++s +a+alre+s++ +e+p+++gyp+y++++l+++yeRag++    r+GS+t++++++++++d+++p+++ t +it+++i+Ld++++++++fP in+l S+S
  MMETSP0890-20130614|11626_1 155 TGISAIDVMNSIARGQKIPLFSAAGLPHNEVAAQICRQAslvqlkdtqdgheENFALVFGAMGVNMETARFFRNDFEESGAMQRTVLFLNLANDPTIERIITPRLALTTAEYLAYeKDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV--DGRSGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQMHNKEIFPPINVLPSLS 381
                  8*********************************************99987556666**********************************************************8999**************************************************..9*******************************************************98 PP

>> PF00306.22  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   4.5e-18   1.5e-14       3      98 ..     400     484 ..     398     495 .. 0.92

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 4.5e-18
                  HHHHHHHHHHHHHHHHCCHHH--.TTS-HHHHHHHHHHHHHHH.HT---TTGGG.......-.HHHHHHHHHHCC----TTS-GGGHHHHHHHHHHH CS
   PF00306.22   3 vagklkleLaqyrElaafvqlvGsdaLseedkltlerarrlee.fLkQnqysplpvekqvvsiveetidlfyallrgklddlpeeelekigtkdiek 98 
                  v+++l++ +a +r++ a+ ++vG++aLs +d l+l++ +r+e  f++Q+ y+++       + +++++d+ ++llr     +p+e l+ki +k ++ 
  MMETSP0890-20130614|11626_1 400 VSNQLYASYAMGRDVVAMKAVVGEEALSLDDHLYLSFLERFESkFISQGPYENR-------T-IFDSLDIAWSLLR----AFPKELLKKIPKKVLNT 484
                  89****************************************************.......9.*************....**********8888873 PP

>> PF02874.18  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.3     4e-13   1.4e-09       3      69 .]      35      99 ..      33      99 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4e-13
                 CC---EEEEE-STTEE--TTTEEEEEEEEES-EEEEEEEEE-SSEEEEEEB---TT-B-.---EEEEE CS
   PF02874.18  3 qviGpVvdvefgigrlpgiynalkvelvefgklvlgvalnlgddkVriiamgstdGlkr.GdeVkdTG 69
                  v+Gp+v+ e+++   p+  ++++ +l + g+ + g++l++ + +++++++++t+ ++   + +++TG
  MMETSP0890-20130614|11626_1 35 GVNGPLVILEKVKM--PKFAEIVNLRLGN-GEIRSGQVLEVNGSRAVVQVFEGTSDIDNrHTHCEFTG 99
                 69*******99988..*************.****************************9899999998 PP

>> PF09378.5  HAS barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.5e-05      0.12      10      81 ..      36      85 ..      30     113 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.5e-05
    PF09378.5 10 ssdlifrveglkdvrvGeyVeielqdgekvlGmvldiergselsndlalvlslkeidesigdiegvvatedt 81
                 ++++++++e +k++++ e V  +l+ ge++ G+vl ++                         ++v+++e+t
  MMETSP0890-20130614|11626_1 36 VNGPLVILEKVKMPKFAEIVNLRLGNGEIRSGQVLEVNG----------------------SRAVVQVFEGT 85
                 48999**********************************......................88888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.65
# Mc/sec: 1843.35
//
Query:       MMETSP0890-20130614|11633_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-10   38.8   7.0    8.2e-10   38.3   4.8    1.3  1  PF02575.11 YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.019   13.6   0.0      0.019   13.6   0.0    1.2  1  PF02144.11 Repair protein Rad1/Rec1/Rad17


Domain annotation for each model (and alignments):
>> PF02575.11  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   4.8   1.2e-13   8.2e-10      12      90 ..      82     159 ..      72     168 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.2e-13
   PF02575.11  12 eeaqeelaekevegesggglVkVtvnGkgevksveidpelldpedkemledlivaAindAlkkaeelakeemskltggl 90 
                  +++ e++a++ v+g++ gg +kV  +G+g+ +s+e+++++l+ +    +++ +++A ++A++++  ++k++m ++ +++
  MMETSP0890-20130614|11633_1  82 AKIAERMASIVVDGTALGGKIKVSYDGQGQPLSIEVSDDALS-QGEAAVSKGVIEAAKKAQQESLVKMKQTMVSMQQEI 159
                  6899*************************************9.9****************************9998765 PP

>> PF02144.11  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-06     0.019     112     143 ..      85     123 ..      41     159 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.8e-06
   PF02144.11 112 v.......asssakatscklsYkgeGsPLvliLeeagvt 143
                          ++  a+  ++k+sY+g+G+PL+++ +++ ++
  MMETSP0890-20130614|11633_1  85 AermasivVDGTALGGKIKVSYDGQGQPLSIEVSDDALS 123
                  04444444777888899*****************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1119  (0.0818461); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.93
# Mc/sec: 438.04
//
Query:       MMETSP0890-20130614|11636_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-48  163.3   0.4    8.4e-48  163.1   0.3    1.0  1  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.3   6.2e-52   8.4e-48      10     297 ..      13     300 ..       4     309 .. 0.85

  Alignments for each domain:
  == domain 1    score: 163.1 bits;  conditional E-value: 6.2e-52
                  ..-TT-THHHHHHHHHHHH---GGGS-----..----.HHHHHTTS-HHHHHHHHHHH.....HS----------------HHHHHH----HHHHHHHH--------B--S---..----TT------SS-HHHHH---TTTT-----EEEEE-SS------TTTTTT-TTEEEEEEEETT..SSST---TT----------EEEEEE------HHHHHHHHHTHHHHHHH.....H--SEEEE----TTBTT-TT----B-----HHHHHHHHHHH.H----EEEB------TTTTTT- CS
   PF00850.14  10 k.hpespeRlsavlsllkekglleelevikp..reat.keelllvhspeYleqleelasekeeelallglesdtplspgsleaallaagavieavdlvlegevrkafvairppG..HHAekdsasGFCllNnvaiaakyllkkhglkrvlivDfDvHhGnGtqeifysdpsvltlSlHdyeeefyPgtgaadevgegkgkgynlniplepgtsdeeylkafekilkpllek.....fkpelvlvsaGfDalagDplgrlnlteegyaeltrdllela.lakgkvvlvleGGYnlealara 297
                  + h + + + + + +++ e++l ++ e++ p  +  + +++++++h+ +Y++   + +  ++++ ++lg   + p++  ++++ +l + +++ a+d + +      ++a++++G  HHA+++ + GF  lN++ai a+ + +k +  +vlivD+DvH+G+Gt++i+ ++p+v+t+S+H     +yP++ + d +g   + +++l+i+l+ +t+d++ l+ +++ l +ll+       +p+l l+ aG+D  a+D lg++n t++g+ +++  ++e + l   ++v v++GGY+ ++ + a
  MMETSP0890-20130614|11636_1  13 ErHRFAMWKFEDLKKQVVEEDLCSDAEFFVPqiNTKEfDQAVHRAHDANYIDAFYSNN-LDRANWRRLGFT-QRPFHIPLVRRTQLEVAGTLLAADIARH----FTGIAVNLAGgtHHAHRSYGAGFTALNDLAITALDVAHKDN-AKVLIVDVDVHQGDGTAQICQNEPNVFTFSIHC--ADNYPFQFSLDYLG---HDKSDLDIALPSNTDDATILSTLQHHLPSLLDTlalssASPSLCLYDAGIDVDADDALGKFNCTPQGIFQRDVYVIEQClLRAIPIVTVIGGGYDRDRKKLA 300
                  34777888888888888888877777776663356667899*************7777.666666667744.35666799999************98873....699*********************************99955.8********************************..67***776667785...99****************************9974444477***************************************66666**********98765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 1016.83
//
Query:       MMETSP0890-20130614|11635_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-09   38.7   0.0    1.9e-09   37.8   0.0    1.4  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    0.00046   20.3   0.0    0.00088   19.4   0.0    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   2.8e-13   1.9e-09       7      98 ..     129     209 ..     123     211 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 2.8e-13
    PF13640.1   7 gpggflspHvDnsesssrrltlllylndpeweeeGGelelypsd.rsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgrrlaitgw 98 
                  ++  +l+ H+D+   ++  +tlll l++p+ ++ GG ++++p + +     ++++    +p++g++++F+sd++ H+  p+ ++grrl + ++
  MMETSP0890-20130614|11635_1 129 KRQRGLKKHTDG---RKEGATLLLLLSRPQRDFTGGGTRFFPGIlE-----SSFD---AKPNAGSTIVFPSDTLQHEGLPI-KRGRRLLVCVF 209
                  5677899*****...**************************98622.....3333...44*********************.*****999877 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.3e-07   0.00088      10      97 ..     126     210 ..     119     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.3e-07
                  EES--E-EEEEEEEESSSCEEEEEEE.......T--EEEEEE-EE..SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEE CS
   PF03171.15  10 YpppekglglgpHtDnenriltillq.......ddggglqfrked..kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislaffl 97 
                  Y   +++ gl+ HtD  ++ +t+ll        + ggg++f++    + +d++p+ ++ +v++ d+l           +H++lp +rg R+ + +f 
  MMETSP0890-20130614|11635_1 126 YD-AKRQRGLKKHTDGRKEGATLLLLlsrpqrdFTGGGTRFFPGIleSSFDAKPNAGSTIVFPSDTL-----------QHEGLPIKRGRRLLVCVFA 210
                  66.56899*********99999999999**************887999999999999********66...........5******999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.97
# Mc/sec: 711.50
//
Query:       MMETSP0890-20130614|11639_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-24   85.1   0.0    7.2e-23   80.6   0.0    2.1  1  PF10032.4 Phosphate transport (Pho88)


Domain annotation for each model (and alignments):
>> PF10032.4  Phosphate transport (Pho88)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   5.3e-27   7.2e-23      30     182 ..     111     281 ..      84     293 .. 0.81

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 5.3e-27
    PF10032.4  30 lyirilyvlsqvilllvylylrvkikkknDlttlkyvepasplssee......................eeklekttvkeYDlkelrkllksilmgvammgfmhlymkytnPLllQsisplksllesnlvkihllgkpaegdLkRPfkeasglfeaaeaaaaevktdkkaieeae 182
                  l +r+++++  ++  +v+ +++ +i   +D+t lk+  ++  l ++                       +     ttv++YDl+ ++k  +s++ ++ +m+ +hl+ +y +PL++Q+ + + sll+ +lv+i++++++  g+L+RPfk  ++++++++a+ +++k+   + ++ e
  MMETSP0890-20130614|11639_1 111 LFARVAFIAFLLLHQIVLSFIQERILIVDDTTPLKIPANP--LIAQLaarqgnendanptneamkgvlsNMMERDTTVRDYDLELVKKGRNSQIGSLLLMAYLHLRRGYLQPLIMQTFLGIFSLLRDPLVQIYIYQRQSDGKLARPFK--PPTPAWLKAMEEQTKALDVNSDKDE 281
                  5678899999999999999999999999999999986554..3333223346777888887777777755555689************************************************************************..8889999998777776554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       741  (0.0541984); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.80
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|11642_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.72
# Mc/sec: 931.92
//
Query:       MMETSP0890-20130614|11637_1  [L=898]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-14   52.1   0.0    5.5e-14   52.1   0.0    2.2  2  PF01421.14 Reprolysin (M12B) family zinc metalloprotease
      2e-12   47.6   0.3    1.8e-11   44.5   0.0    2.5  2  PF13582.1  Metallo-peptidase family M12B Reprolysin-like
    4.6e-12   45.8  19.5    4.6e-12   45.8  13.5    4.4  4  PF00200.18 Disintegrin
      2e-11   43.7   0.1    4.6e-11   42.5   0.0    1.7  1  PF13583.1  Metallo-peptidase family M12B Reprolysin-like
    2.3e-11   43.9   0.3    6.1e-11   42.5   0.1    1.9  2  PF13574.1  Metallo-peptidase family M12B Reprolysin-like
    4.4e-09   36.4   1.0    4.4e-09   36.4   0.7    2.8  3  PF13688.1  Metallo-peptidase family M84
    2.5e-06   27.1   0.0    4.8e-06   26.2   0.0    1.6  1  PF00413.19 Matrixin
     0.0022   17.6   0.0     0.0041   16.8   0.0    1.4  1  PF01562.14 Reprolysin family propeptide
  ------ inclusion threshold ------
      0.045   12.9   0.0      0.082   12.1   0.0    1.3  1  PF10026.4  Predicted Zn-dependent protease (DUF2268)
      0.046   13.2   0.0       0.11   11.9   0.0    1.6  1  PF05572.8  Pregnancy-associated plasma protein-A


Domain annotation for each model (and alignments):
>> PF01421.14  Reprolysin (M12B) family zinc metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     4e-17   5.5e-14      84     187 ..     329     432 ..     321     448 .. 0.84
   2 ?   -4.4   3.3       8.1   1.1e+04     143     185 ..     477     522 ..     474     529 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 4e-17
                  HS--SEEEEEE----GGG------------TTT----EE---.S-HHHHHHHHHHH-----------HHHH--...SSSTT-SS...--SS--S---HHHHHHHHHHH CS
   PF01421.14  84 rkkhdaaqLltakefkketvGaayvgsiCsakssvgvvedes.knvelvavilahelghnLGlehdekkkCkceeakeCiMeee...assspskkFSkcsveeyekfl 187
                   ++ d++ L+++++f+++t+G+ay+g+ C+ +s+v+vv+ +s ++ + +a++ ahe+gh LG+ehd  +    +  ++ iM+++     +  +  FS+ s+++  +++
  MMETSP0890-20130614|11637_1 329 TSDFDIVVLISGTDFDSSTQGLAYIGGSCRGDSAVAVVSTYStSTATRLATVTAHEIGHLLGMEHDAIT----DDINSNIMAPSfrgGLDPLNLAFSDDSRQYAADWF 432
                  5678***********************************9996778899*****************993....356788**999553445556699999998876654 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 8.1
                  -------H.HHH--...SSSTT-SS--SS--S..---HHHHHHHHH CS
   PF01421.14 143 LGlehdek.kkCkceeakeCiMeeeassspsk..kFSkcsveeyek 185
                  +G++ d   ++C+ e++ eC ++e+    +++  +F k +++++++
  MMETSP0890-20130614|11637_1 477 IGIDDDCCsNDCTLEPGCECALSEACCTDQGTiaNFGKVCRDRMHE 522
                  5666666577899999999999998766666557899988888876 PP

>> PF13582.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.9   1.2e+03      33      93 ..      64     126 ..      32     142 .. 0.72
   2 !   44.5   0.0   1.3e-14   1.8e-11      53     124 .]     324     394 ..     300     394 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.9
    PF13582.1  33 satdpyssssandtldenaalqatreigqanyDighlfstsdl...ggggGlAyvgsvcnngkk 93 
                  + ++    +++++t+ +  +++++r +++ ny+     s++++     ++G ++   + ++g++
  MMETSP0890-20130614|11637_1  64 QRDSRAFAADYTETIIRAGEVRHKR-RRNRNYCHYSGWSNTGErvfASNCGKGFRAIIGTPGQS 126
                  4445555566688888888999998.88999998888888777888888888666555555555 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 1.3e-14
    PF13582.1  53 lqatreigqanyDighlfstsdl.ggggGlAyvgsvcnngkkagvna.sssptgdvgadtvaHEiGHqfGanHt 124
                   ++t    +++ Di++l+s++d+ + ++GlAy+g+ c+ +++ +v++  s+ t+   a + aHEiGH++G  H+
  MMETSP0890-20130614|11637_1 324 AISTT---TSDFDIVVLISGTDFdSSTQGLAYIGGSCRGDSAVAVVStYSTSTATRLATVTAHEIGHLLGMEHD 394
                  44444...899*****************************995555515545555677***************7 PP

>> PF00200.18  Disintegrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   3.2        10   1.4e+04      32      50 ..     286     306 ..     277     313 .. 0.59
   2 !   45.8  13.5   3.4e-15   4.6e-12       2      74 ..     469     541 ..     468     543 .. 0.91
   3 ?   -2.7   5.1       4.6   6.3e+03      16      63 ..     570     622 ..     555     628 .. 0.52
   4 ?    1.3   0.2      0.27   3.6e+02      14      51 ..     660     680 ..     632     702 .. 0.63

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 10
                  S..-----BSSSSB-----ES CS
   PF00200.18  32 C..segeCCkkcklkkagtvC 50 
                  C  + g+C ++c+ ++ ++ C
  MMETSP0890-20130614|11637_1 286 CciQLGSCGQTCTETEISSFC 306
                  235556666666555555555 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 3.4e-15
                  XXXXXXXXXXX...........XXXXX...S.-----BS.SSSB-----ESEECT.EE....EE-----SS--S.. CS
   PF00200.18   2 egeecdcgseeeckdkcCdaktCklkegaqC.segeCCk.kcklkkagtvCreak.necdleeyCtGksaeCpedv 74 
                  e+e+cd g     +d+cC++ +C+l++g +C  ++ CC+ + ++++ g+vCr++  ++cdl e+C+G+sa+Cp d 
  MMETSP0890-20130614|11637_1 469 ENEQCDPGI--GIDDDCCSN-DCTLEPGCECaLSEACCTdQGTIANFGKVCRDRMhETCDLYEVCDGQSATCPLDL 541
                  79******9..459****66.**********8899****77*************9889***************986 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 4.6
                  ........XXXXX...S-----BS.SSSB-----ESEECTEE.........EE- CS
   PF00200.18  16 dkcCdaktCklkegaqCsegeCCk.kcklkkagtvCreakne.....cdleeyC 63 
                  d+c   +    +++  C+ ++C +  c+ +++g++C    +      cd +++C
  MMETSP0890-20130614|11637_1 570 DTCYGVTLDGNSAEIVCRASTCSNiGCR-ESSGSICTVIGTApdgtpCDDDKIC 622
                  4444444444445666777777774565.5566666533211122225555555 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.27
                  ...........XXXXX...S-----BSSSSB-----ESE CS
   PF00200.18  14 c.kdkcCdaktCklkegaqCsegeCCkkcklkkagtvCr 51 
                  c +++ C+++t +l+++++C                   
  MMETSP0890-20130614|11637_1 660 ClEEPKCQDETGELTDTENC------------------D 680
                  33344444444444444444..................3 PP

>> PF13583.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   3.3e-14   4.6e-11      84     156 ..     322     396 ..     204     427 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3.3e-14
    PF13583.1  84 tlaaargskdaDlavlltattketsnvGlAwlgqlttqnakggvvskaekitkey..divaHEiGHlfGaaHdlt 156
                   +a +  + d+D++vl++ t+ ++s+ GlA++g  ++ + + +vvs  +  t +    + aHEiGHl+G +Hd  
  MMETSP0890-20130614|11637_1 322 LIAISTTTSDFDIVVLISGTDFDSSTQGLAYIGGSCRGDSAVAVVSTYSTSTATRlaTVTAHEIGHLLGMEHDAI 396
                  4556667899**************************888888999887744443333669*************75 PP

>> PF13574.1  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.2   8.5e+03      53      80 ..      76     103 ..      54     114 .. 0.63
   2 !   42.5   0.1   4.5e-14   6.1e-11      59     132 ..     320     397 ..     270     426 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 6.2
    PF13574.1  53 allsenqnllssligesnydighlfstf 80 
                  +++ ++ ++ ++ + ++ny++   +s++
  MMETSP0890-20130614|11637_1  76 ETIIRAGEVRHKRRRNRNYCHYSGWSNT 103
                  4444556666677777888887777543 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 4.5e-14
    PF13574.1  59 qnllssligesnydighlf..stfeggglglayvgqicskgekatGlsapsgdsf...eidvvaHElGHqfGanHdfts 132
                   +l++ + ++s++di++l+  ++f +++ glay+g+ c  + +a ++++ ++ s+    + v+aHE+GH +G +Hd   
  MMETSP0890-20130614|11637_1 320 DELIAISTTTSDFDIVVLIsgTDFDSSTQGLAYIGGSCRGD-SAVAVVSTYSTSTatrLATVTAHEIGHLLGMEHDAIT 397
                  55666678899********98889**************755.55566655555554656677**************764 PP

>> PF13688.1  Metallo-peptidase family M84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.33   4.5e+02      97     136 ..     276     318 ..     261     329 .. 0.71
   2 !   36.4   0.7   3.2e-12   4.4e-09      89     161 ..     328     396 ..     295     410 .. 0.81
   3 ?   -9.0   4.0        10   1.4e+04     161     181 ..     484     508 ..     482     509 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.33
    PF13688.1  97 ilflmsncsgg.vGlAwlgqlcnsgsagsvs..trveksanvv 136
                  + + ++ c+++ + l++ gq+c++++ +s++   +v ++a++v
  MMETSP0890-20130614|11637_1 276 YAIGTEACNTCcIQLGSCGQTCTETEISSFCllASVGNFAYQV 318
                  4555567999999***********9977777334444445555 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 3.2e-12
    PF13688.1  89 gqqnddlailflmsncsgg.vGlAwlgqlcnsgsagsvstrveksanvvvststewqvvaHElGHnfGavHDcd 161
                  ++++ d+++l++ +++++   GlA+ g++c  +sa +v ++++      ++++  + v+aHE+GH +G +HD  
  MMETSP0890-20130614|11637_1 328 TTSDFDIVVLISGTDFDSStQGLAYIGGSCRGDSAVAVVSTYS-----TSTATRLATVTAHEIGHLLGMEHDAI 396
                  3344479********999889************9999999944.....47678889****************75 PP

  == domain 3    score: -9.0 bits;  conditional E-value: 10
    PF13688.1 161 dsss...esqs.Cslsnstedaggr 181
                  +s+    e ++ C+ls++++ ++g+
  MMETSP0890-20130614|11637_1 484 CSNDctlEPGCeCALSEACCTDQGT 508
                  5444455344459999999988875 PP

>> PF00413.19  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.5e-09   4.8e-06      66     132 ..     342     405 ..     174     425 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 3.5e-09
                  ---------EEE---------EEEETTS--BSTSSS-BHHHHHHHH----------SSTTSTTSSBC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00413.19  66 pfDgkdgvLahafapgelggdihfdddeqWtlgeqgvslflVaaHEiGHalGLeHssdkdalmyply 132
                  +fD + + L  a+++g+++gd+      ++++ ++++ l +V+aHEiGH+lG+eH+   d +   ++
  MMETSP0890-20130614|11637_1 342 DFDSSTQGL--AYIGGSCRGDSAVAVVSTYST-STATRLATVTAHEIGHLLGMEHDAITDDINSNIM 405
                  344443333..344444555555555555544.68899*****************988776544333 PP

>> PF01562.14  Reprolysin family propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-06    0.0041      43     117 ..      60     132 ..      42     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3e-06
   PF01562.14  43 vLdLepnkgllapgfvvevynesgtaevasprseehcyYqGtVegepgssvalstc.dgLrGlirlenesYfIePl 117
                   L L+++++ +a++++++  +  g+ + +++r ++ c+Y+G   ++ g  v  s+c +g+r +i + ++s  +  +
  MMETSP0890-20130614|11637_1  60 SLTLQRDSRAFAADYTETIIRA-GEVRHKRRRNRNYCHYSG--WSNTGERVFASNCgKGFRAIIGTPGQSRKVREI 132
                  699***************8877.555555566789******..5999999**************999888666665 PP

>> PF10026.4  Predicted Zn-dependent protease (DUF2268)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     6e-05     0.082      18      80 ..     328     392 ..     314     401 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6e-05
    PF10026.4  18 gp.dvpifilpvdeekpklreekggkggvaipdkiflfl.lsnesdkselkallaHEyhHvvrls 80 
                   + d++i++l++ ++  + ++ +++ gg    d+ + ++ + ++s+ ++l+++ aHE+ H++ ++
  MMETSP0890-20130614|11637_1 328 TTsDFDIVVLISGTDFDSSTQGLAYIGGSCRGDSAVAVVsTYSTSTATRLATVTAHEIGHLLGME 392
                  33499999**************************9999999*******************98765 PP

>> PF05572.8  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05      0.11      33      85 ..     346     393 ..     332     404 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.1e-05
    PF05572.8  33 knsGvAwyPdegmsadqvarvtfngkYlaadststnfasvltHelGHflgLrH 85 
                  ++ G A+   +   ++ va v     Y  ++st t  a+v +He+GH lg++H
  MMETSP0890-20130614|11637_1 346 STQGLAYIGGSCRGDSAVAVVST---Y--STSTATRLATVTAHEIGHLLGMEH 393
                  55677777777666666665542...3..579999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       640  (0.046811); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.38u 0.46s 00:00:01.84 Elapsed: 00:00:00.96
# Mc/sec: 2241.59
//
Query:       MMETSP0890-20130614|11643_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-08   33.7   0.1    1.2e-07   31.8   0.0    2.1  2  PF12796.2  Ankyrin repeats (3 copies)
     0.0004   19.9   0.0     0.0014   18.2   0.0    2.0  1  PF00023.25 Ankyrin repeat
     0.0024   17.9   0.0     0.0088   16.1   0.0    2.1  1  PF13857.1  Ankyrin repeats (many copies)
     0.0029   17.5   0.0      0.051   13.7   0.0    3.0  2  PF13606.1  Ankyrin repeat
     0.0063   16.0   0.2      0.015   14.8   0.1    1.6  1  PF06467.9  MYM-type Zinc finger with FCS sequence motif
  ------ inclusion threshold ------
      0.016   15.6  13.4      0.016   15.6   9.3    3.4  4  PF09538.5  Protein of unknown function (FYDLN_acid)
       0.14   11.3   2.8        0.5    9.5   1.9    1.9  1  PF04570.9  Protein of unknown function (DUF581)
       0.15   12.1   1.1       0.21   11.6   0.0    1.8  2  PF12171.3  Zinc-finger double-stranded RNA-binding
        2.3    7.3  15.6        6.1    5.9  10.8    1.6  1  PF05432.6  Bone sialoprotein II (BSP-II)
        5.4    4.7  15.7       0.32    8.8   4.9    2.2  2  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   8.7e-11   1.2e-07       3      77 ..     462     544 ..     460     553 .. 0.84
   2 ?   -2.3   0.1       3.9   5.3e+03      57      60 ..     646     649 ..     563     670 .. 0.55

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 8.7e-11
    PF12796.2   3 lAaengnlelvklLlekgadvdl........getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvkl 77 
                   A+e+gn  lv+  l++ ++ d         g++pLhl a+ag  eiv  Ll  gad+ + d++++tp +lA  ++  ++++l
  MMETSP0890-20130614|11643_1 462 DACEQGNETLVRSVLDERNNEDDilnapdfvGRRPLHLIASAGVAEIVIELLRCGADPTTIDDRQRTPYYLARDKRTRDAFRL 544
                  59*************9553333336689999999*************************************987777666655 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.9
    PF12796.2  57 kegn 60 
                  ++gn
  MMETSP0890-20130614|11643_1 646 YHGN 649
                  3333 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     1e-06    0.0014       2      33 .]     493     524 ..     493     524 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1e-06
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                  G+ PLHl a+ g +e+v  Ll +GAd++  dd
  MMETSP0890-20130614|11643_1 493 GRRPLHLIASAGVAEIVIELLRCGADPTTIDD 524
                  566************************98775 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.4e-06    0.0088       6      56 .]     483     533 ..     479     533 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 6.4e-06
    PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  ++ +na d  g+ pLhl a++g +e+v++Ll+ gad+++ d + +t++ lA
  MMETSP0890-20130614|11643_1 483 DDILNAPDFVGRRPLHLIASAGVAEIVIELLRCGADPTTIDDRQRTPYYLA 533
                  566788888899************************************998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.5   2.1e+03       6      20 ..     460     474 ..     458     482 .. 0.81
   2 !   13.7   0.0   3.7e-05     0.051       2      28 ..     493     519 ..     492     521 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.5
    PF13606.1   6 LhlAasngrielvea 20 
                  L  A+++g+  lv+ 
  MMETSP0890-20130614|11643_1 460 LLDACEQGNETLVRS 474
                  5679*****999975 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3.7e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G+ pLhl as g  e+v +Ll++gad+
  MMETSP0890-20130614|11643_1 493 GRRPLHLIASAGVAEIVIELLRCGADP 519
                  899***********************8 PP

>> PF06467.9  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-05     0.015       7      42 ..     622     660 ..     620     661 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
    PF06467.9   7 krCwfCkkyiktkptv.yalend...gvvgqFCStsClds 42 
                  + C++Ckk ++++  +  a +++   +  + FCS++C++ 
  MMETSP0890-20130614|11643_1 622 DACDQCKKAMPSRN-SrSAASRNlfyHGNYAFCSSTCAAA 660
                  57************.99999999999***********986 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       6.6     9e+03      71      77 ..      83      89 ..      65     100 .. 0.45
   2 ?   15.6   9.3   1.2e-05     0.016      27     108 .]     105     196 ..     101     197 .. 0.46
   3 ?   -1.7   0.0       2.9   3.9e+03      56      70 ..     422     436 ..     396     485 .. 0.63
   4 ?    0.8   2.2      0.47   6.5e+02      50      73 ..     577     599 ..     552     637 .. 0.45

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.6
    PF09538.5 71 ledddee 77
                 +e+dd+e
  MMETSP0890-20130614|11643_1 83 IEEDDTE 89
                 1111111 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.2e-05
    PF09538.5  27 ivcpkcgeevepe.......keakkkavaadeeeea........aeekeee.eeeeeddvledddeeedl..dddledeadddvdldeddDdvleddddd 108
                  ++c  cg ++e +       +        ++ ++++        ++ +ee+   +ee+  +ed d + ++  d + ++++++d+d+deddDd+ ++dd++
  MMETSP0890-20130614|11643_1 105 LTCLACGMSFENRisqaqhfA--------TELHKANarrraqgkVALVEEDfIVSEEKSIEEDGDGDGKKevDKNNDSQEEEDDDIDEDDDDEDSADDEE 196
                  58*********9966554442........22222112232233322222220222222222222222222543333333444668888777755555554 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.9
    PF09538.5  56 aeekeeeeeeeeddv 70 
                  ++++++++++++  +
  MMETSP0890-20130614|11643_1 422 QKSNPSNAKKKSSSS 436
                  222222222222222 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.47
    PF09538.5  50 deeeeaaeekeeeeeeeeddvled 73 
                  d e+ +++++e+++ +++ ++l++
  MMETSP0890-20130614|11643_1 577 DTEK-KKRQREKQKLNKQRAQLQA 599
                  1111.1111111111111111111 PP

>> PF04570.9  Protein of unknown function (DUF581)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.9   0.00036       0.5      14      47 ..     618     657 ..     605     665 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00036
    PF04570.9  14 edfLssCflCkkkLgegkD......iymYrGekaFCSeeC 47 
                  ++  ++C  Ckk + +++         +Y G+ aFCS+ C
  MMETSP0890-20130614|11643_1 618 KEATDACDQCKKAMPSRNSrsaasrNLFYHGNYAFCSSTC 657
                  5566889999998866433112212468***********9 PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.21       3      27 .]     106     130 ..     104     130 .. 0.95
   2 ?   -2.7   0.1       4.7   6.5e+03       4      15 ..     624     635 ..     624     636 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00016
                  B-TTT--B-SSHHHHHHHTT-HHHH CS
    PF12171.3   3 YCvaCdkyFksenqlknHlksKkHK 27 
                   C aC+  F ++ +  +H+ +  HK
  MMETSP0890-20130614|11643_1 106 TCLACGMSFENRISQAQHFATELHK 130
                  6***********************9 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.7
                  -TTT--B-SSHH CS
    PF12171.3   4 CvaCdkyFksen 15 
                  C+ C k + s+n
  MMETSP0890-20130614|11643_1 624 CDQCKKAMPSRN 635
                  999**9887766 PP

>> PF05432.6  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.8    0.0044       6.1      47     113 ..     152     218 ..     146     223 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0044
    PF05432.6  47 ssdsseenGdGdsseeeeeeetsneeennedsdenedeeae.aenltlstvtlgyGgdvtpgtgdigl 113
                     s ee+GdGd + e +++++s+eee+++  ++++de+++  e+ t +    g   ++ +gt+++ l
  MMETSP0890-20130614|11643_1 152 EEKSIEEDGDGDGKKEVDKNNDSQEEEDDDIDEDDDDEDSAdDEEETQGM-NSGLVRNIKSGTAEVLL 218
                  56799***********9999999999986655555555554045555554.47888888899988755 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.9   0.00023      0.32     109     181 ..     126     200 ..     117     267 .. 0.50
   2 ?    0.9   0.9     0.058        79     169     214 ..     574     606 ..     520     658 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00023
    PF02724.9 109 eelekeeeerdayealvemkeeee...eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrs 181
                  +el+k ++ r+a+ +    +ee+    ee+  ++d + d ++e  ++++++++e+d+ +edddde++ d+e++ + 
  MMETSP0890-20130614|11643_1 126 TELHKANARRRAQGKV-ALVEEDFivsEEKSIEEDGDGDGKKEVDKNNDSQEEEDDDIDEDDDDEDSADDEEETQG 200
                  5555555555544443.33322224432222222222222222222222222222222222222233333333332 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.058
    PF02724.9 169 deededeeqrkrsnesslakslrrrrrrereekeevlekyYaqgts 214
                  +++              ++k++r+r++++ ++++++l+++ a+++ 
  MMETSP0890-20130614|11643_1 574 KQK-------------DTEKKKRQREKQKLNKQRAQLQADAARANA 606
                  111.............112333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1413  (0.10335); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.24u 0.38s 00:00:01.62 Elapsed: 00:00:00.75
# Mc/sec: 2185.48
//
Query:       MMETSP0890-20130614|11652_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-23   80.5   3.4    7.9e-13   47.7   0.1    3.0  3  PF13374.1  Tetratricopeptide repeat
    1.3e-21   76.2   0.4    3.2e-21   74.9   0.3    1.5  1  PF13424.1  Tetratricopeptide repeat
    4.5e-13   48.0   1.8    1.9e-06   27.1   0.3    2.1  2  PF00515.23 Tetratricopeptide repeat
    2.7e-12   45.4   2.1    1.8e-06   27.3   0.3    2.1  2  PF07719.12 Tetratricopeptide repeat
    1.1e-11   44.8   2.1    1.6e-07   31.6   0.3    1.5  2  PF13432.1  Tetratricopeptide repeat
    5.8e-11   41.7   1.4    1.7e-05   24.2   0.2    2.1  2  PF13414.1  TPR repeat
    1.4e-10   39.9   0.1    2.9e-05   23.4   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    7.5e-09   34.6   0.5    2.4e-05   23.6   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.4e-08   34.4   0.2    2.7e-05   24.3   0.1    2.2  2  PF13428.1  Tetratricopeptide repeat
    6.4e-08   32.1   0.1    0.00034   20.6   0.1    2.2  2  PF07721.9  Tetratricopeptide repeat
    5.3e-07   29.2   1.9     0.0011   18.9   0.1    3.1  2  PF13431.1  Tetratricopeptide repeat
    4.7e-06   26.6   0.4     0.0031   17.7   0.1    2.2  2  PF13174.1  Tetratricopeptide repeat
      0.008   15.0   0.0     0.0092   14.8   0.0    1.1  1  PF04910.9  Transcriptional repressor TCF25
  ------ inclusion threshold ------
      0.013   15.3   0.1        3.9    7.4   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat
      0.016   15.2   0.0      0.027   14.4   0.0    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.099   13.2   0.7        2.2    8.9   0.1    2.2  2  PF08238.7  Sel1 repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.049        42      33      42 .]       3      12 ..       2      12 .. 0.88
   2 !   47.7   0.1   9.2e-16   7.9e-13       1      41 [.      13      53 ..      13      54 .. 0.98
   3 !   28.9   0.0   7.7e-10   6.6e-07       2      28 ..      56      82 .]      55      82 .] 0.96

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.049
    PF13374.1 33 rrllGddHPd 42
                 ++ +G++HP+
  MMETSP0890-20130614|11652_1  3 EKTYGPNHPN 12
                 7899*****5 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 9.2e-16
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHP 41
                 +a+ lnnLA +l ++g+y+eA al+e+a +i + +lG++HP
  MMETSP0890-20130614|11652_1 13 VATRLNNLAELLKNQGDYDEAKALLERAIEIGEIILGPNHP 53
                 799*************************************9 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 7.7e-10
    PF13374.1  2 aaalnnLAlalrargryeeAlaleeea 28
                 a+ lnnL+ +l+++g+++eA +l+e+a
  MMETSP0890-20130614|11652_1 56 ATRLNNLGGLLYTQGKHDEAKPLYERA 82
                 899**********************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.3   3.7e-24   3.2e-21       1      72 [.      10      82 .]      10      82 .] 0.98

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 3.7e-24
    PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
                 hp++at lnnla++l+ +gdydeA +l+e+a+e+    lg++hp +a+ lnnl+ l++ +g++deA++++e+A
  MMETSP0890-20130614|11652_1 10 HPNVATRLNNLAELLKNQGDYDEAKALLERAIEIgEIILGPNHPAIATRLNNLGGLLYTQGKHDEAKPLYERA 82
                 99********************************98899********************************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.3   2.2e-09   1.9e-06       4      30 ..      17      43 ..      14      44 .. 0.95
   2 !   20.5   0.0   2.6e-07   0.00022       4      27 ..      59      82 .]      56      82 .] 0.95

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekALel 30
                 l+nl+ ++ ++g+ydeA +  e+A+e+
  MMETSP0890-20130614|11652_1 17 LNNLAELLKNQGDYDEAKALLERAIEI 43
                 89***********************98 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekA 27
                 l+nlG +++ +gk+deA   ye+A
  MMETSP0890-20130614|11652_1 59 LNNLGGLLYTQGKHDEAKPLYERA 82
                 89*********************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.3   2.1e-09   1.8e-06       4      30 ..      17      43 ..      14      45 .. 0.93
   2 !   18.1   0.0   1.8e-06    0.0016       4      27 ..      59      82 .]      56      82 .] 0.94

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.1e-09
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                 l+nl++++ ++gdy+eA++++e+A+e+
  MMETSP0890-20130614|11652_1 17 LNNLAELLKNQGDYDEAKALLERAIEI 43
                 89***********************97 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekA 27
                 l+nlG ++y +g+++eA+ ++e+A
  MMETSP0890-20130614|11652_1 59 LNNLGGLLYTQGKHDEAKPLYERA 82
                 89*********************8 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.6e-06    0.0022      30      59 ..      13      42 ..       8      53 .. 0.66
   2 !   31.6   0.3   1.9e-10   1.6e-07       3      57 ..      20      82 .]      18      82 .] 0.96

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.6e-06
    PF13432.1 30 aaeallllaeallrlgrldeAaallraala 59
                  a  l +lae+l  +g++deA all++a++
  MMETSP0890-20130614|11652_1 13 VATRLNNLAELLKNQGDYDEAKALLERAIE 42
                 566667777777777777777777777763 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 1.9e-10
    PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57
                 lA++l ++GdydeA a+le+a++          P  a  l +l+ +l+ +g++deA  l+++a
  MMETSP0890-20130614|11652_1 20 LAELLKNQGDYDEAKALLERAIEIGeiilgpnhPAIATRLNNLGGLLYTQGKHDEAKPLYERA 82
                 899***************************99999**********************999986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2     2e-08   1.7e-05       2      39 ..      13      55 ..      12      59 .. 0.83
   2 !   17.6   0.0   2.3e-06     0.002       3      29 ..      56      82 .]      54      82 .] 0.93

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2e-08
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnael 39
                 +A  l++l++ l ++gdydeA +++e+A+e+      pn++ +
  MMETSP0890-20130614|11652_1 13 VATRLNNLAELLKNQGDYDEAKALLERAIEIGeiilgPNHPAI 55
                 57789*************************7434444999976 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.3e-06
    PF13414.1  3 AealkelGnalfkegdydeAieayekA 29
                 A  l++lG  l+++g++deA  +ye+A
  MMETSP0890-20130614|11652_1 56 ATRLNNLGGLLYTQGKHDEAKPLYERA 82
                 6679*********************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.4e-08   2.9e-05       2      28 ..      17      43 ..      17      53 .. 0.88
   2 !   14.8   0.0   1.8e-05     0.016       2      24 ..      59      81 ..      59      82 .] 0.95

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 3.4e-08
    PF13176.1  2 llnLarlysrlgdyekAielyeraLal 28
                 l+nLa+l  ++gdy++A  l+era+++
  MMETSP0890-20130614|11652_1 17 LNNLAELLKNQGDYDEAKALLERAIEI 43
                 89*********************7665 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.8e-05
    PF13176.1  2 llnLarlysrlgdyekAielyer 24
                 l+nL+ l   +g++++A  lyer
  MMETSP0890-20130614|11652_1 59 LNNLGGLLYTQGKHDEAKPLYER 81
                 89********************9 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   2.8e-08   2.4e-05       4      30 ..      17      43 ..      13      47 .. 0.93
   2 !    9.5   0.0   0.00094       0.8       4      27 ..      59      82 .]      55      82 .] 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2.8e-08
                 TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeylekalel 30
                 ++nl++++++ Gdyd+Ak+ le+a+e+
  MMETSP0890-20130614|11652_1 17 LNNLAELLKNQGDYDEAKALLERAIEI 43
                 78***********************98 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00094
                 TTT---HHHHTT-HHHHHHHHH-- CS
    PF13181.1  4 yynlGdiYrqlGdydkAkeyleka 27
                 ++nlG ++   G++d+Ak  +e+a
  MMETSP0890-20130614|11652_1 59 LNNLGGLLYTQGKHDEAKPLYERA 82
                 789*****************9987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   3.1e-08   2.7e-05       5      41 ..      18      59 ..      13      62 .. 0.86
   2 !    9.4   0.0    0.0019       1.6       6      27 ..      61      82 .]      56      82 .] 0.90

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.1e-08
    PF13428.1  5 lalarallalGdpdeAiallrrala.....laPddaealllL 41
                   la++l ++Gd+deA all+ra++     l+P+++++ ++L
  MMETSP0890-20130614|11652_1 18 NNLAELLKNQGDYDEAKALLERAIEigeiiLGPNHPAIATRL 59
                 479*********************977777889999988876 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0019
    PF13428.1  6 alarallalGdpdeAiallrra 27
                  l+ +l  +G +deA  l++ra
  MMETSP0890-20130614|11652_1 61 NLGGLLYTQGKHDEAKPLYERA 82
                 69999***************98 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   3.9e-07   0.00034       5      26 .]      18      39 ..      14      39 .. 0.92
   2 !    9.9   0.0    0.0011      0.97       6      26 .]      61      81 ..      56      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.9e-07
                 ---HHHHHH-------HHHHHT CS
    PF07721.9  5 laLArallalGdldeAraller 26
                  +LA++l  +Gd+deA aller
  MMETSP0890-20130614|11652_1 18 NNLAELLKNQGDYDEAKALLER 39
                 59*******************8 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0011
                 --HHHHHH-------HHHHHT CS
    PF07721.9  6 aLArallalGdldeAraller 26
                 +L+ +l+ +G +deA  l er
  MMETSP0890-20130614|11652_1 61 NLGGLLYTQGKHDEAKPLYER 81
                 89999**********999987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.2e-06    0.0011      16      34 .]      17      35 ..       7      35 .. 0.83
   2 !    8.7   0.1    0.0023         2      16      33 ..      59      76 ..      36      77 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.2e-06
    PF13431.1 16 ynnLAelllnnGdleeAeq 34
                 +nnLAell+n+Gd++eA++
  MMETSP0890-20130614|11652_1 17 LNNLAELLKNQGDYDEAKA 35
                 68***************85 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0023
    PF13431.1 16 ynnLAelllnnGdleeAe 33
                 +nnL+ ll+ +G+++eA+
  MMETSP0890-20130614|11652_1 59 LNNLGGLLYTQGKHDEAK 76
                 57**************97 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.6e-06    0.0031       5      28 ..      19      42 ..      19      43 .. 0.94
   2 !    7.2   0.0    0.0083       7.1       8      25 ..      64      81 ..      61      82 .] 0.75

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                 +la++++++gd+deA+++ler i+
  MMETSP0890-20130614|11652_1 19 NLAELLKNQGDYDEAKALLERAIE 42
                 699******************997 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHHHHHHHH CS
    PF13174.1  8 lsyyklgdtdeAlealer 25
                  ++y +g++deA+ ++er
  MMETSP0890-20130614|11652_1 64 GLLYTQGKHDEAKPLYER 81
                 4455566*********98 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05    0.0092      43     103 ..      17      79 ..       9      81 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
    PF04910.9  43 LlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnass..gkirlnyeryeNralf 103
                  L +l+e++++qgd+ +A +l+era+ i e ++ p+   +  + ++  g  + + ++ e + l+
  MMETSP0890-20130614|11652_1  17 LNNLAELLKNQGDYDEAKALLERAIEIGEIILGPNHPAIATRLNNlgGLLYTQGKHDEAKPLY 79 
                  889**********************99999998887665544443336677777777777666 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0093         8      44      66 ..      20      42 ..      10      47 .. 0.87
   2 ?    7.4   0.0    0.0046       3.9       7      27 ..      62      82 .]      56      82 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0093
    PF12688.2 44 laSsLRnlGrveeslalleaela 66
                 la  L+n G  +e+ alle++++
  MMETSP0890-20130614|11652_1 20 LAELLKNQGDYDEAKALLERAIE 42
                 78889*************99875 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0046
    PF12688.2  7 ragarDstGeeakAvplYrrA 27
                  +g   + G++++A plY+rA
  MMETSP0890-20130614|11652_1 62 LGGLLYTQGKHDEAKPLYERA 82
                 57778899***********98 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.1e-05     0.027      29      83 ..      18      81 ..       3      82 .] 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHH---HHHHHHHHHC......TSHCHCBHHHHH...HHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2 29 yalAlclylngeykrAyellrk......leldssslgcry...llArcllklgkydeAiavLek 83
                  +lA+ l ++g+y++A  ll++        l +++++++     l+  l+ +gk+deA  ++e+
  MMETSP0890-20130614|11652_1 18 NNLAELLKNQGDYDEAKALLERaieigeIILGPNHPAIATrlnNLGGLLYTQGKHDEAKPLYER 81
                 45799999********999999999998777778866666323446999999999999888887 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0026       2.2       5      38 ..      18      44 ..      17      45 .. 0.81
   2 ?    3.0   0.0      0.18   1.6e+02       5      34 ..      60      82 .]      59      82 .] 0.59

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0026
    PF08238.7  5 ynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38
                 +nL+  ++++n  g    d+++A  ++e+A e G
  MMETSP0890-20130614|11652_1 18 NNLA--ELLKNQ-G----DYDEAKALLERAIEIG 44
                 6888..777888.4....999*********8865 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.18
    PF08238.7  5 ynLGlyymylnGlgGvpkdpekAleWyekA 34
                 +nLG  +++++ +      +++A  +ye+A
  MMETSP0890-20130614|11652_1 60 NNLG--GLLYTQG-----KHDEAKPLYERA 82
                 6888..4444553.....344777788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 284.78
//
Query:       MMETSP0890-20130614|11651_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-44  150.6   0.0    2.9e-44  150.5   0.0    1.0  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
      0.064   12.8   0.1       0.26   10.9   0.0    2.0  2  PF02209.14 Villin headpiece domain


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   4.3e-48   2.9e-44       2     190 .]       6     189 ..       5     189 .. 0.96

  Alignments for each domain:
  == domain 1    score: 150.5 bits;  conditional E-value: 4.3e-48
                  HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE.-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
   PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiG.sgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                  ++G ++v+++gk++v +a+d+r   ++++++ + +eK+fk +d+i++++aGla+D++tl   ++ ++ ly+lr++r++++e    ++aall++++++++++p++v+ l+ag+ e+g+p+l+ +d +G+ +   ++v+ G + +   ++l+e+ +++d++ ++++e++ ++l ++++rd+lsg+++ v vi
  MMETSP0890-20130614|11651_1   6 HNGAAIVAMAGKNCVAIASDTRFGLRQQTVTCD-FEKVFKMSDKIYVGLAGLATDVQTLRATLKFKLALYKLREERKMKPE----AFAALLSHMLYEKRFGPYFVEPLVAGLKEDGTPFLCGMDLIGAPVFTNDFVVSGtC-ASNLNGLCESFFRPDMEPDDLFETISQCLLASVDRDALSGWGAIVHVI 189
                  5899*************************6777.9**********************************************....*******************************************999999*****66.555***************************************999886 PP

>> PF02209.14  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.8e-05      0.26       6      20 ..      38      52 ..      36      55 .. 0.83
   2 ?   -1.7   0.0      0.31   2.1e+03      12      21 ..      81      90 ..      80      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.8e-05
                 HHHHHTSS-HHHHTT CS
   PF02209.14  6 dFeevFgMtkeeFyk 20
                 dFe+vF+M+ + +  
  MMETSP0890-20130614|11651_1 38 DFEKVFKMSDKIYVG 52
                 9********988765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.31
                 SS-HHHHTTS CS
   PF02209.14 12 gMtkeeFykL 21
                 +M  e+F++L
  MMETSP0890-20130614|11651_1 81 KMKPEAFAAL 90
                 7999***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 634.88
//
Query:       MMETSP0890-20130614|11649_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   73.1   0.0    2.9e-20   72.6   0.0    1.2  1  PF01755.12 Glycosyltransferase family 25 (LPS biosynthesis protein)


Domain annotation for each model (and alignments):
>> PF01755.12  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   2.2e-24   2.9e-20      20     200 .]       2     207 ..       1     207 [. 0.81

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 2.2e-24
   PF01755.12  20 kkeleklkiefqffdAidgkekee.......ellqkllnsklakkyvgkeLtlgelGCylSHyllWekcveln.leyiiIlEDDvilseefkealedllkeik..........eleflrlgelkktrfeekdkellkletfledsksfkkkkiaeyekra........fyllssevagtaGYlltpkaAkkllkalkelklpvDelm 200
                  + ++++ +i  + f+A +g++ +e       +   + l +k+   + + +Lt+ge GC++SH  lW  c +    e+++IlEDDv +  +fk  l+++l   +          ++  + + ++   +f+++ + +     + + s++ + ++    e++              ++v++t +Y++ p aA+ ll  l  +++pvD+++
  MMETSP0890-20130614|11649_1   2 EGRFKEIGIHATRFEARTGDDAPEsvvlfewDTRLNALYDKTTLPHPRVPLTKGERGCAMSHACLWSMCASSHrEEPMLILEDDVQFIPNFKFYLDAVLTRLNtayltkihpsQHRLILYLGADVASFSPPYHTIQHKLWLRSLSHTLFTTNDTPLEEEFsqnehvalRLVSADYVWQTSSYIIWPAAARALLAEL-PMREPVDNFI 207
                  5678899999999******9999999999996666666677888999**********************98763599*******************99999888888888888777888888888888888888877777777777666665544443334445665455566799******************99.7799**9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.68
# Mc/sec: 923.30
//
Query:       MMETSP0890-20130614|11650_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-19   69.4  23.5    3.4e-19   68.7  16.3    1.3  1  PF07690.11 Major Facilitator Superfamily
    1.3e-05   24.9   4.4    0.00068   19.3   0.3    2.6  2  PF03105.14 SPX domain


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7  16.3   4.9e-23   3.4e-19       3     350 ..     250     594 ..     245     600 .. 0.76

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 4.9e-23
   PF07690.11   3 laaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsd...r.fGrrrvlllglllfalglllll..fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeelrkepaplvp..awklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlll...vlvliGfglglvfptllalasdlappeerGtasglfntagslgg 350
                  +a+ +++  r +lg+a   a+ ++  +sps ++ l ++ +l y+ ++++++  +    r + +  ++ +++l++a + ++++    ++ + ++++++++ G+++++++p + +l+a+  p ++rgr +g+++++++ G i+ ++l+++ ++  g+r++F  +a+++ l++ + ++ l  +  +++ + ++++   e++ ++   +w++ + p    ++ + +l+     +++l++  +yl  vl ++    +a+l+  +  l+++ig+lllg  +d  +++ +  ++l+ll++++l + +la     + +++   v++liG    l  + ++ +      +++rG+ ++++n+++ l++
  MMETSP0890-20130614|11650_1 250 IAYGFVYSCRRALGVAKG-AM-STTSLSPSNMSNLDGILLLSYVTMQFIVAKYGGilkRlVPPEQIIPIAVLCTAGA-TYATgrA-APNFIFMAIAWAINGVFQALVYPYVCVLLAKQMPASRRGRLMGVWNTCSATGGIISAALSAAALERRGYRGAFESAALVTSLCGTVLFAILSYTSGQNHDDDKIQQ---ENRTMKHinVWEMQRVPI---VCAAYSLIKP-LRYTFLFWHNFYLTAVLQFG--TREAALVECIETLFALIGGLLLGLAADVCSPWIIFSFCLFLLAASLLVFHPLAQLGLGPDIAIvaiVSALIGAVDNL-ASGFTGAFLVDWNEKQRGSSASIANVVSLLSA 594
                  566666666677788887.55.44578999999999999999999999987776522253578889***********.7777554.55555******************************************************************************88644555555555555555555...677777766677777777...3555555555.8888****************..677777777777777777**********8886666666666666666666666664444444312244445554444.45555555555688999999999999987775 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2   0.00038       2.6      92     125 ..      85     118 ..      45     119 .. 0.76
   2 !   19.3   0.3     1e-07   0.00068     235     263 ..     116     144 ..     110     148 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00038
   PF03105.14  92 seseFfkaLdkElekvddFykekekeleerledL 125
                  ses+F++ +++++ +v++Fy  +e+ ++++  +L
  MMETSP0890-20130614|11650_1  85 SESAFVEIIKEDIMRVNEFYLAEEERVRNDESAL 118
                  9***********************9998876655 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1e-07
   PF03105.14 235 relelLksYqeLNrtAfrKIlKKyDKqtg 263
                  + l+lLk+Y+   + + +KI KK+DK+ +
  MMETSP0890-20130614|11650_1 116 SALRLLKRYAAVQYVGCKKIAKKFDKNAH 144
                  579***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.39s 00:00:01.39 Elapsed: 00:00:00.98
# Mc/sec: 1508.73
//
Query:       MMETSP0890-20130614|11655_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-28   98.5   0.0    8.1e-14   51.0   0.0    4.5  3  PF00313.17 'Cold-shock' DNA-binding domain
  ------ inclusion threshold ------
        2.7    6.0   7.8        4.7    5.2   5.4    1.3  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.7e-08   0.00039       2      65 ..      96     167 ..      95     168 .. 0.83
   2 !   51.0   0.0   1.2e-17   8.1e-14       3      65 ..     347     411 ..     345     412 .. 0.89
   3 !   21.3   0.0   2.2e-08   0.00015       2      64 ..     446     517 ..     445     519 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.7e-08
                  ---B----S..----B--........------BB--TTT----T.TS------EEEEE--.-----BEEEEEE CS
   PF00313.17   2 tGtVkwfnakkgfGFItr........edgekdvFvHqsaiqkdgfrsLkeGqeVeFevve.gekgpeAanVtk 65 
                  tG + wf+++k++G I++        e g + +FvH   +++   +  k G++VeF+     +++++Aa+V+ 
  MMETSP0890-20130614|11655_1  96 TGRCLWFDSRKNYGAIQPdislgieaETGHSYIFVHGNDLESGS-QPPKIGDTVEFCRGTcPRGRTKAAKVVV 167
                  8999**********998722222222578889**********99.9**************7777889999975 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 1.2e-17
                  --B----S...----B--------BB--TTT----T.TS------EEEEE--..-----BEEEEEE CS
   PF00313.17   3 GtVkwfnak.kgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevve..gekgpeAanVtk 65 
                  G Vkwf+++ k++GFIt++dg+ d+F+H   + ++  ++L  G++VeF+     ++++p+A +V++
  MMETSP0890-20130614|11655_1 347 GRVKWFDRDrKSYGFITPADGSPDLFMHAGDVIGST-KTLGPGDAVEFDYGVqpQSGRPKALEVVR 411
                  99****964389************************.***********965446999****99975 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 2.2e-08
                  ---B----S..----B----.......----BB--TTT----T..TS------EEEEE--.-----BEEEEE CS
   PF00313.17   2 tGtVkwfnakkgfGFItred.......gekdvFvHqsaiqkdg.frsLkeGqeVeFevve.gekgpeAanVt 64 
                  tGt+  +++  ++GFI ++d       g+++ FvH   + +     ++  Gq+V F vv+ ++++++A++V 
  MMETSP0890-20130614|11655_1 446 TGTISRYDTTHRWGFIAPDDanlkppnGGDNFFVHGLDVLDATeESDVHVGQRVAFAVVRtRSRRCKAVQVL 517
                  8****************99744444435679****877655442789*************9********996 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.4   0.00069       4.7     253     359 ..     172     272 ..     136     329 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00069
    PF09726.4 253 rkekgkdkaknssdkkkekkelqqknhhasksksvqsy...ssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspks 359
                   +++++++  ++ ++++++++ qq+ + +++ +++  y   +     +++  + ++++  ++ s++++a++++       ++++++  +s   ++++++ r+ s +sp +
  MMETSP0890-20130614|11655_1 172 PSQQAQQQVSATISSSTQQQQQQQQAQAQAQAQAAAGYhyvT----GAHMSAHRASHQMWAAGSTGSPANSVT-----PGTATSSMHRQSAAVQQQQQAARNASTASPTT 272
                  223333333322233333322233333234444444442232....333333333333333333333333333.....22222223333333333333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1498  (0.109567); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.39s 00:00:01.56 Elapsed: 00:00:01.29
# Mc/sec: 1114.58
//
Query:       MMETSP0890-20130614|11653_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-23   81.1   0.0      2e-22   79.6   0.0    1.8  2  PF00092.23 von Willebrand factor type A domain
    8.6e-20   71.4   0.1    6.3e-19   68.6   0.0    2.1  2  PF13519.1  von Willebrand factor type A domain
    3.5e-12   46.1   0.0    6.2e-12   45.3   0.0    1.5  1  PF13768.1  von Willebrand factor type A domain
     0.0067   15.4   0.2       0.05   12.6   0.0    2.2  2  PF05762.9  VWA domain containing CoxE-like protein
  ------ inclusion threshold ------
      0.019   14.8   0.1       0.11   12.4   0.0    2.4  2  PF09967.4  VWA-like domain (DUF2201)
      0.026   13.8   0.1       0.54    9.5   0.0    2.3  2  PF11775.3  Cobalamin biosynthesis protein CobT VWA domain


Domain annotation for each model (and alignments):
>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.9e-26     2e-22       1     173 [.      70     247 ..      70     254 .. 0.92
   2 ?   -2.8   0.0       1.7   3.9e+03      49      91 ..     341     382 ..     335     404 .. 0.54

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 8.9e-26
                  EEEEEEE-STTS-HHHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTST....TSHHHTTSEEEEEEE-----C---STHHHHHHHHHH........GEEEEEEEE--SCCCHHHHHHCS-SSTTCCCB-STSSHHHHH CS
   PF00092.23   1 DivfvlDgSgSigeenfekvkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfss....aagsrenapkvvillTDGksndggspeaaaaklrek........klgitvfgvGvsdvdeeelrsiaskpdseghvfrltdfdall 173
                  D+v+vlD SgS+ + ++++ k++i  li+     + ++r+glv +++++++ + +    sk+e+++ +   +   gg+tn++ +L + l+ l +     ++g   +  + v+llTDG++n g ++ +    + +            +++fg+G+   + + l++i+  p+  g +++++++d++l
  MMETSP0890-20130614|11653_1  70 DVVLVLDRSGSMAGGKLTLCKKTIDLLIN---ELKPNDRFGLVVFDHQVQVTFEVECIGSKKEMMHEQ-VSKIITGGQTNLSGGLLKGLDILAKAgpgiEEGVTHDRVRAVFLLTDGQANVGITDMNLLRHAVNDavatmpgaPPSVYTFGYGS-APNAALLQAIV--PEERGGYYFVESTDKVL 247
                  9****************************...77**********************************.999999*******************99999999999*****************544444444444499*****99**********.***********..999999**999999876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.7
                  EEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHH CS
   PF00092.23  49 aktevslndfkskeellsavsknlkylgggtntgkALkyalen 91 
                  +++ v+++d+++  ++++    +l       ++++AL  a+++
  MMETSP0890-20130614|11653_1 341 VTVLVKVTDDENVLKQNRTS-THLATQIARLDVADALADARSK 382
                  55556666654433333333.4443444444455555555554 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   2.8e-22   6.3e-19       1     168 [.      70     250 ..      70     254 .. 0.85
   2 ?    0.4   0.1      0.24   5.4e+02      89     113 ..     332     356 ..     289     436 .. 0.64

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 2.8e-22
    PF13519.1   1 dlvlvlDvSgSMnaedvsptrldaakaalkdlldel.pgdrvglvafsgsaelvaplt...sdraalkaalnsldprlmpgggtnlaaalalalellakad.........grraaivlvtDGedn..........ssdieaasalkragikiyvvgvgsdegaeallkelaeatggryfdassdaeeleaa 168
                  d+vlvlD+SgSM+       +l+  k++++ l++el p+dr+glv+f+  +++ ++++   s +++  ++++++     +gg+tnl+ +l ++l++laka+         +r +a++l+tDG++n              +a+ +   a   +y++g+gs  +a all+++  +  g y+ ++s++  l a+
  MMETSP0890-20130614|11653_1  70 DVVLVLDRSGSMAGG-----KLTLCKKTIDLLINELkPNDRFGLVVFDHQVQVTFEVEcigSKKEMMHEQVSKII----TGGQTNLSGGLLKGLDILAKAGpgieegvthDRVRAVFLLTDGQANvgitdmnllrHAVNDAVATMPGAPPSVYTFGYGSAPNA-ALLQAIVPEERGGYYFVESTDKVLGAF 250
                  79***********99.....8**************74699****************9656588888777777777....58*******************99*******9999************77666555532233477788889999********9987.*******99999999998777666554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.24
    PF13519.1  89 alellakadgrraaivlvtDGedn..s 113
                  a +++++++   +++v vtD+e+   +
  MMETSP0890-20130614|11653_1 332 AGRMIHADP--VTVLVKVTDDENVlkQ 356
                  334444333..4445555555422221 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.7e-15   6.2e-12       2     154 ..      70     237 ..      69     239 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2.7e-15
    PF13768.1   2 evVivvDvsssmsgepvelvkdaLsailrsLpprdkvnvvlfgtearplfpgsravssaelqellqkvkeleadlGasnlegaLkealrqp..........akpgearhvlllsdgss.ts.gaervl.qliraaark.....irifalglgetlsadmlqeLAeaggGsy 154
                  +vV+v+D s+sm g +++l k+++ +++  L p+d++ +v+f+++ ++++ +   +  ++++   + v ++    G++nl g L + l+ +              ++r v+ll+dg + +  ++  +l  ++ +a+++      ++ ++g g+  +a++lq++  + +G y
  MMETSP0890-20130614|11653_1  70 DVVLVLDRSGSMAGGKLTLCKKTIDLLINELKPNDRFGLVVFDHQ-VQVTFEVE-CIGSKKEMMHEQVSKIIT-GGQTNLSGGLLKGLDILakagpgieegVTHDRVRAVFLLTDGQAnVGiTDMNLLrHAVNDAVATmpgapPSVYTFGYGSAPNAALLQAIVPEERGGY 237
                  9********************************************.66888855.555668888889999766.8*********988864444678898998889***********9755533322332444444433111124456666677777788887766666655 PP

>> PF05762.9  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.2e-05      0.05      54     141 ..      65     155 ..      44     190 .. 0.78
   2 ?    0.0   0.2      0.15   3.4e+02      99     144 ..     359     403 ..     338     411 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.2e-05
    PF05762.9  54 erkprrlvllvDvSgSmeaysavfla..llhallaqls...rtelfaFstrltdltsalrerDpaeaLlrvsaavedlgGgTrigealaefle 141
                  +r p ++vl++D SgSm+   +++l+   +  l ++l+   r  l++F++++ ++t +++    ++ ++  + +    gG T+++ +l + l+
  MMETSP0890-20130614|11653_1  65 QRPPVDVVLVLDRSGSMAG-GKLTLCkkTIDLLINELKpndRFGLVVFDHQV-QVTFEVECIGSKKEMMHEQVSKIITGGQTNLSGGLLKGLD 155
                  577889************9.77776533677888888888899999**9986.7888888777777666665333337788888888776655 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.15
    PF05762.9  99 rltdltsalrerDpaeaLlrvsaavedlgGgTrigealaeflelvt 144
                    t+l  ++++ D+a+aL++++ +  d g  T + ++l  + + ++
  MMETSP0890-20130614|11653_1 359 TSTHLATQIARLDVADALADAR-SKADQGDFTSVQTSLGRVKSTIA 403
                  4688999999999999999998.56677888888888877777665 PP

>> PF09967.4  VWA-like domain (DUF2201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.8e-05      0.11       1      69 [.      71     146 ..      71     189 .. 0.79
   2 ?   -1.4   0.0      0.89     2e+03      85     111 ..     323     349 ..     305     355 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.8e-05
    PF09967.4   1 vaviiDtSgSisdkelarflaeiaailrrl..eaevtvvacdekvsseqkles..weekl..sev.eltggGGTdl 69 
                  v++++D SgS+   +l  + + i+   ++l  + +  +v++d++v+ + ++e    ++++  ++v ++ +gG T+l
  MMETSP0890-20130614|11653_1  71 VVLVLDRSGSMAGGKLTLCKKTIDLLINELkpNDRFGLVVFDHQVQVTFEVECigSKKEMmhEQVsKIITGGQTNL 146
                  799*********************998888556679**********998888765333330122213445555666 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.89
    PF09967.4  85 vvivlTD.legkpaetaPkvpviwvvpg 111
                    + + D l g+ ++++P v v++ v+ 
  MMETSP0890-20130614|11653_1 323 FNLHFVDaLAGRMIHADP-VTVLVKVTD 349
                  345688988999999999.777777666 PP

>> PF11775.3  Cobalamin biosynthesis protein CobT VWA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00024      0.54      15      44 ..      71     100 ..      65     119 .. 0.88
   2 ?    1.6   0.0     0.063   1.4e+02     133     181 ..     271     320 ..     259     332 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
    PF11775.3  15 vtllldlsGsmrGrkitlalasadiladal 44 
                  v l+ld sGsm G k+tl   + d+l + l
  MMETSP0890-20130614|11653_1  71 VVLVLDRSGSMAGGKLTLCKKTIDLLINEL 100
                  779****************99999988776 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.063
    PF11775.3 133 medkkillvisdGaP.vddstlsvaaGdylerhlrtvikeietlseveli 181
                   e+  i  v  dGa    d ++sv+ Gd + +  r ++ e++   + +l 
  MMETSP0890-20130614|11653_1 271 AENASITKVRRDGAKrSSDISFSVDLGDIYAEEERDIVVEMKNNQKSDLK 320
                  5777788888999972468899*****************99876555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:01.02
# Mc/sec: 1169.99
//
Query:       MMETSP0890-20130614|11661_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-19   67.6   0.0    8.4e-19   66.8   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    8.7e-17   60.7   0.0    1.5e-16   60.0   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    7.5e-10   38.4   0.1    1.3e-09   37.5   0.0    1.4  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      0.009   15.2   0.2      0.013   14.7   0.1    1.2  1  PF04012.7  PspA/IM30 family
  ------ inclusion threshold ------
      0.036   14.2   0.1      0.057   13.5   0.0    1.3  1  PF08232.7  Striatin family
       0.21   10.7   3.9       0.27   10.3   2.7    1.2  1  PF06991.6  Splicing factor, Prp19-binding domain
        3.7    6.7  13.0        5.2    6.2   9.0    1.3  1  PF12287.3  Cytoplasmic activation/proliferation-associated protein-1 C term


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   4.3e-22   8.4e-19       1      70 []      91     160 ..      91     160 .. 0.99

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 4.3e-22
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  ++Vg + +d+t eeL  +F  +G i+++++ +d +tg+skg+a+VeFe+ +++++A+  l++ +++gr+lk
  MMETSP0890-20130614|11661_1  91 IYVGQVDYDATPEELQNHFASCGTINRVTILCDrKTGQSKGYAYVEFEEADSVQNAIM-LDNSIFKGRQLK 160
                  8*********************************************************.*********986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   7.7e-20   1.5e-16       1      69 []      91     160 ..      91     160 .. 0.98

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 7.7e-20
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                  +yv+ + +++t+e+l ++f+++g++++v i  +++ g+++g+A+vefe ++++q+a+   n ++kgr ++
  MMETSP0890-20130614|11661_1  91 IYVGQVDYDATPEELQNHFASCGTINRVTILCDRKtGQSKGYAYVEFEEADSVQNAIMLDNSIFKGRQLK 160
                  8********************************999*******************************986 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   6.8e-13   1.3e-09       1      53 [.     105     161 ..     105     162 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 6.8e-13
    PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkv 53 
                  L ++f+ +G+++r++i+ +      +g+A+vef+ +++ ++a+  l++  ++g++Lkv
  MMETSP0890-20130614|11661_1 105 LQNHFASCGTINRVTILCDRktgqsKGYAYVEFEEADSVQNAI-MLDNSIFKGRQLKV 161
                  679*************888889**99*****************.8************9 PP

>> PF04012.7  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   6.7e-06     0.013     165     192 ..      48      74 ..      42      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.7e-06
    PF04012.7 165 dslerieeKieerearadaaaelaesaq 192
                  ++le+++++++e+ea+ad  + l+ +++
  MMETSP0890-20130614|11661_1  48 PELEEMKKRVAEMEAEADKLKALQ-QEL 74 
                  58*****************99999.444 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05     0.057      26      53 ..      49      76 ..      45     117 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.9e-05
    PF08232.7 26 EraEmkarIakLeGerrglenlkedLkr 53
                 E  Emk r+a++e e+ +l++l+++L+ 
  MMETSP0890-20130614|11661_1 49 ELEEMKKRVAEMEAEADKLKALQQELQD 76
                 668*********************9975 PP

>> PF06991.6  Splicing factor, Prp19-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.7   0.00014      0.27       6      68 ..      15      77 ..      10     130 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
    PF06991.6  6 eaeeedeseeeeeeeseeeeetdseddmeprlkPvfvrkkdratiqerereeekekeleeeak 68
                 e+e +++ +eee  ++e+e   + ed+ +  + P   + k+r +  e+e+ + k  ++e +++
  MMETSP0890-20130614|11661_1 15 EEEVDGDLGEEEGGDEEDEAGVNYEDEGDGAIDPELEEMKKRVAEMEAEADKLKALQQELQDD 77
                 22334566677777888888888999999********99999999988888777776665554 PP

>> PF12287.3  Cytoplasmic activation/proliferation-associated protein-1 C term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.0    0.0026       5.2     237     271 ..     171     206 ..     136     208 .] 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0026
    PF12287.3 237 nsrgvsrgGprnarGllnGyrGs.snGfrGGydGyr 271
                    rg  rgG r+ rG + G  G    G+rGGy Gyr
  MMETSP0890-20130614|11661_1 171 RGRGRGRGGFRGRRGGFRGRGGYyRGGYRGGYRGYR 206
                  468899*********9999777624589*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1036  (0.0757753); expected 273.4 (0.02)
Passed bias filter:                      822  (0.0601229); expected 273.4 (0.02)
Passed Vit filter:                       126  (0.00921592); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.46s 00:00:01.07 Elapsed: 00:00:00.98
# Mc/sec: 508.61
//
Query:       MMETSP0890-20130614|11664_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   21.7   0.6    0.00044   20.4   0.4    1.7  1  PF07850.9 Renin receptor-like protein


Domain annotation for each model (and alignments):
>> PF07850.9  Renin receptor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.4   3.2e-08   0.00044      42      89 ..     274     325 ..     218     331 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.2e-08
                  XXXXXXXXXXXX..X..XXXXXXXXXXXXXXXXXXXXXXXXXX---TSGGGS CS
    PF07850.9  42 nlavkyntdYsv..i..FniilwlvvilvlalivisvalasmDPgkDsiiYR 89 
                  +l  + +t Y++  i  F++ +w  ++lvl l +   a+ +m P++Ds++Y 
  MMETSP0890-20130614|11664_1 274 KLDDSTTTYYPIsdIrqFQLNMWTGIALVLVLAAALAAMVNMKPEYDSLLYA 325
                  444455555554331349999*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 1380.95
//
Query:       MMETSP0890-20130614|11668_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   19.1   0.0     0.0026   17.9   0.0    1.6  2  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.039   5.3e+02     100     131 ..      22      53 ..      14      58 .. 0.66
   2 !   17.9   0.0   1.9e-07    0.0026      11      57 ..      36     105 ..      25     120 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.039
                  T------------------------------- CS
   PF00504.16 100 kapesegsekraypGglgfdplglakdeeeka 131
                  ++++s++s++ + pG +  d + lak+  +++
  MMETSP0890-20130614|11668_1  22 EEKSSSSSSSYQNPGRMSLDDITLAKQTTALD 53 
                  33334445566789999999999997766655 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.9e-07
                  XXXXXXXXXX.---.......................-TTTTT--------TTT---------------- CS
   PF00504.16  11 gdlgfDplglskdp.......................tlkrlreaEliHGRvAMlavlGalvpelltkls 57 
                  g +  D + l+k++                        + + ++aE+i+GR AM  ++  l++e+ t+ s
  MMETSP0890-20130614|11668_1  36 GRMSLDDITLAKQTtaldalstrwqrqkdlrdwegskLIGFSEQAEIINGRSAMFFIVVGLLTEYWTGQS 105
                  5555666666655566666777777777777777777788999*************99999999887643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 487.26
//
Query:       MMETSP0890-20130614|11666_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-94  315.7   4.4    3.5e-94  315.4   3.1    1.0  1  PF00026.18 Eukaryotic aspartyl protease
     0.0018   18.5   0.8      0.055   13.8   0.0    3.0  2  PF13650.1  Aspartyl protease


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.4   3.1   5.2e-98   3.5e-94       1     314 []      57     365 ..      57     365 .. 0.96

  Alignments for each domain:
  == domain 1    score: 315.4 bits;  conditional E-value: 5.2e-98
                  EEEEEEEE----EEEEEEBE------EEEBTTSSCCGHHTS--B-GGG-TT-EE---B--EE-----EE-EEEEEEEE---.-EEEEEEEEEEEEE-..HHHHCCTS----B-E--GGG-S-B.---HHHHHHHC--CSSSEEEE---STT----EEE---BCCCEE-EEEEEEBC-SSS-EEEBEEEE----EEEEEEBEEEE-----SEEE-HHHHHHHHHHH--EETS...SEEEETTGG-GS-EEEEETTS-EEEEEGGGGEEEC--STTSEEEESEEETT-.ST--SSEEE--TTGGGEEEEEETTTTEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00026.18   1 eYfgeisiGtpeqkftvifDTGSsdlWVpskkctssackshstydpskSstykkngksfsisYGdgsvsGflsqDtvklgg.ltvkeqefgeatkep..gstflaakfdGilGlgfkeievgetatpvfdtllsqglidepvFsvylnsdaeggelvfGgvDeskykGsltyvpvtkkgywqvelesvtvgdktfcssgcqailDtGTsllalpesivekiakavgaaese..geyvvdCsslsslpdiaftvggkkitvsaselvlkesesasaiCilglqeldv.peegelwiLGdvFlrsaytvfdldnnrvglAea 314
                  +Y+g+is Gtp q+  vifDTGSs+lW+++ k  +s   shs yd+skSsty +ng++f+i+YG+g vsGf+s+Dt+++g+ +t+++  f+ea+ ++  g  fla++fdGilGl++++i+v+  +++  + +++ +l+de+vF++ l  +a  gelvfGgvDe  y G++ty+p+++++yw+++l++v +g++t++++  +ai+D+GTslla+p++ v++ia+a+ga+++   gey++dC++    pdi+f++g+ ++ +s s++v+ +++s    C+lg+  +d+ ++ g+lwiLGdvF+r++y+ fd+dn +vg+A+a
  MMETSP0890-20130614|11666_1  57 QYYGSISAGTPGQTVDVIFDTGSSNLWIVNYKPRFS---SHSYYDHSKSSTYVANGSTFAIEYGSGPVSGFYSRDTIQVGDtVTLENYLFAEANVTSglGVSFLASVFDGILGLAWPSISVDT-VQTPLQAMVATNLLDENVFAFSLGDEA-NGELVFGGVDEDAYVGDFTYIPLSQQTYWEITLDDVLLGSNTSMTTATKAIIDSGTSLLAGPTDEVSAIATALGAKAVGstGEYFIDCDAD--APDISFKLGDTEFPLSLSDYVIADGTS----CLLGMMGIDIdEPVGPLWILGDVFMRKYYVKFDIDNVQVGIATA 365
                  7****************************9888887...8****************************************9568999****998886115689*******************9.99***********************99.***************************************************************************998778********99..***********************9887....**********9*******************************85 PP

>> PF13650.1  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.1e-06     0.055       7      90 .]      68     169 ..      62     169 .. 0.59
   2 ?    1.7   0.1     0.049   3.3e+02      10      31 ..     251     272 ..     244     327 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.1e-06
    PF13650.1   7 gkpvrfllDTGasgt.lis.eelaerlgl.kpeeskipvlvsgagg........ev.karlvrldslkigg.ltlknvpalvld.........lgaeidglLGmdf 90 
                  g++v++++DTG+s++ +++ +  + ++   + ++     +  +a+g        +      +  d++++g+ +tl+n  ++ ++         l +  dg+LG+ +
  MMETSP0890-20130614|11666_1  68 GQTVDVIFDTGSSNLwIVNyKPRFSSHSYyDHSK----SSTYVANGstfaieygSGpVSGFYSRDTIQVGDtVTLENYLFAEANvtsglgvsfLASVFDGILGLAW 169
                  89***********873444433334444313333....34555555211111112202234555579999878999998888887766655555556699999865 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.049
    PF13650.1  10 vrfllDTGasgtliseelaerl 31 
                  +++++D+G s ++ +++ + ++
  MMETSP0890-20130614|11666_1 251 TKAIIDSGTSLLAGPTDEVSAI 272
                  68999***99888886655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:00.62
# Mc/sec: 1491.93
//
Query:       MMETSP0890-20130614|11672_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-10   37.9  12.7    2.7e-06   26.5   2.3    2.0  2  PF06003.7 Survival motor neuron protein (SMN)
  ------ inclusion threshold ------
      0.071   12.5   0.4      0.096   12.0   0.3    1.2  1  PF12081.3 GldM N-terminal domain


Domain annotation for each model (and alignments):
>> PF06003.7  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.5   3.3e-07    0.0023       4      54 ..       6      53 ..       4      65 .. 0.69
   2 !   26.5   2.3     4e-10   2.7e-06     185     250 ..      67     133 ..      58     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.3e-07
    PF06003.7  4 ddsdiwddtalikaydkavasfknalknedcaepaekeeknpgkkrknnkk 54
                 d+ + wddtal+ a++ka+ s+ n   + + ++ a  e   +  k  ++kk
  MMETSP0890-20130614|11672_1  6 DELEKWDDTALVDAFQKAMKSYPNEYEGREDTVEAAVE---ATAKDEDDKK 53
                 66778*******************99986655555444...3333333333 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 4e-10
    PF06003.7 185 rrgeklstlppflsgwppplpagppl..ipppppmspdageddealgsmliswymsgyhtgyylglkq 250
                  +rg   +t++p+ sg+    pa p +     ppp+ p ++  d+ l  +l swy +gy+tg y  +++
  MMETSP0890-20130614|11672_1  67 QRGTPSDTIDPS-SGYGTWQPAQPSMsqTSVPPPLHPPVSTGDDGLSDLLASWYYAGYYTGRYRAFQE 133
                  577777888887.444444555555522467899999999***********************87764 PP

>> PF12081.3  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.4e-05     0.096     108     164 ..      19      71 ..       4      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.4e-05
    PF12081.3 108 eLkkklnkYrddlkallnkeysdlllaelekkfstedennkdg.kkkdflkanFegtP 164
                  +++k +++Y ++     +   +d + a +e+++++ed++++d+  +k f+++  +gtP
  MMETSP0890-20130614|11672_1  19 AFQKAMKSYPNEY----E-GREDTVEAAVEATAKDEDDKKEDDaAEKRFAQLLQRGTP 71 
                  7999999999999....3.4566799*************99999******99988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 430.74
//
Query:       MMETSP0890-20130614|11669_1  [L=1862]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-34  117.6   0.0    1.4e-33  115.8   0.0    1.9  1  PF02010.10 REJ domain
  ------ inclusion threshold ------
        1.2    8.4   6.8       0.18   11.0   1.5    2.0  2  PF00487.19 Fatty acid desaturase


Domain annotation for each model (and alignments):
>> PF02010.10  REJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0     2e-37   1.4e-33      12     404 ..     261     675 ..     245     690 .. 0.80

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 2e-37
   PF02010.10  12 kllynWsvfsvnsnqiltrvln...etteptliippstLpyGeytflltvti.lseevleatdikkvrvepspLvavIkGGtsrvigyrsnitLDGseSyDP........................DsdshssqltyeWlcqrsngr..........egcnnplynippeasrssvltipaselkpnleytfkltvskds..rksasaeqtirvvdg...epplvsiecvqncngkvnpnsrlvLrgsclncdkdikdvtfewsl.atllqtseceselptlksetttgrrarnLviregklqpgksyrlslrVrdkeakkglAsisfkvNepPvgGrcsvfPleGveletaftvrCqgwkdkdq.PLgYevsysqrrasgpyrlLyegsnnrs.ssviLPsgpsqqdykvyvmvsVydnkgarvsvnltitVkpaavn 404
                   + y+W   + n+nq  ++ l    + + +t  ip+++L     t+++++t   + ++l+a+ +  + ve+s+L + I+GG+ r i++ +++ L++  SyDP                          ++ +  l y+W+c+   ++          ++c         +++rss+l +pa +l +n +y+f l +s++    ++a ++ ti+ vd    ++  +  ++v+n+n ++  n+rl++ g +            +w+l   +lq++ +  +++t+   ++ + +   Lv+  g l pg  yr++l  + +     +A i+++v ++PvgG +++ P+ G++l+t f +++ gw +  + PL++++ ++ ++  +p ++L ++s + + + v L  g++     + ++v  ++ +ga+++  +t+tV p+  +
  MMETSP0890-20130614|11669_1 261 GVSYSWILQEKNKNQVFSSELIglvSRDPRTFLIPAYFL-NTSSTYVVKATAtDLLTGLSASTTSIIYVEASDLFPLIQGGS-RSISVHDDLKLNANFSYDPdlcpqdqidnlrsrslkeesnvfyKTTECNFHLLYSWSCRLLYSNlpsildniqeQRC----IGFELLSTRSSILYLPAGTLSANATYEFILEISDRRklSRTAITSVTIQAVDAisnNIFVLDASTVDNKN-TIVANRRLSIFGFSKK------PELLTWTLeEGALQNDLALNDYVTT-PLAKVNNATFPLVLPIGSLIPGGNYRFQLASSFS-----KAWIDLHVAQGPVGGILQIEPQIGYVLSTSFDLTTFGWASFGNdPLTFRFEVREDDLVTPFKVLRSNSLSTIlQAVTLFAGDP-----LPIFVVATNTLGATAEAGTTATVLPFPGS 675
                  57788877777777665555558999999**********.67777777777669999************************6.8999999************6666666666666666666655433333335566666666666669999887766666....999999*****************************99945999999999887611144555555666655.3999999999999555......4566666643334666666666544.44555666677****************9964444.....799*************************************9989****************************88888888855.....66*********************998655 PP

>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.33   2.3e+03     138     157 ..    1522    1564 ..    1503    1606 .. 0.52
   2 ?   11.0   1.5   2.7e-05      0.18     101     182 ..    1690    1772 ..    1669    1790 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.33
   PF00487.19  138 ilalllalaglllllsglg........................a 157 
                   ++all+++a++ ++++ +                         +
  MMETSP0890-20130614|11669_1 1522 FAALLFTIAAI-FAPGIWLliyasdigrretkaffvdtifeffI 1564
                   22222222222.22222222344444444444444444444433 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 2.7e-05
   PF00487.19  101 lllglllggllfllalerrklrkrrrrkglalllallilalllalaglllllsglgalllyvvplalaltvlllvn.yle..Hyg 182 
                   + +++l + +++++   r ++   +  +  ++++  +++  l+a+ag+ l +  +++++l++++l+la+++l +++ +++  H  
  MMETSP0890-20130614|11669_1 1690 VHWRPL-WTSTIVFIILRGYMILPPVLQ-EYSIELSILAIPLIAFAGFSLITANFPFYFLLIIVLILAWVFLVALAqIAQyaHRR 1772
                   334444.344444444444444444443.68999999999********6666666666666666666666666666477777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1862 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       614  (0.0449093); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.34u 0.37s 00:00:02.71 Elapsed: 00:00:01.42
# Mc/sec: 3142.27
//
Query:       MMETSP0890-20130614|11673_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-08   33.1   0.5      9e-08   32.1   0.3    1.6  1  PF00505.14 HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.3   6.6e-12     9e-08      10      63 ..      65     118 ..      52     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 6.6e-12
                  HHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHH CS
   PF00505.14  10 lfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyek 63 
                  lf++++ra ++a +P++  +++  +l+ +W++  +e +++Y eka+ e+e+ ++
  MMETSP0890-20130614|11673_1  65 LFANDHRAAVRAAHPGFLDRAVRNRLSSMWRAADAETRAKYVEKAKIEREKLRA 118
                  7************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.83
# Mc/sec: 1345.42
//
Query:       MMETSP0890-20130614|11676_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 443.92
//
Query:       MMETSP0890-20130614|11675_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-97  327.1   2.6    1.1e-96  324.4   1.8    2.2  1  PF02364.10 1,3-beta-glucan synthase component


Domain annotation for each model (and alignments):
>> PF02364.10  1,3-beta-glucan synthase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.4   1.8  8.1e-101   1.1e-96       5     480 ..     120     571 ..     116     574 .] 0.88

  Alignments for each domain:
  == domain 1    score: 324.4 bits;  conditional E-value: 8.1e-101
   PF02364.10   5 anseaerrisffaqsLatpipep..vpvdkmptftvLvPhYsekillslreiireeeqlskvtlLeYLkqlhakeWdcfvkdtkllaeekeaeeeeeklkdeedlakkkiddlpfyviGfksaapeytlrtriwaslrsqtlyrtvsgfmnysraikllyrvenpevvqlfagnseklerelekmarrkfklvvamqryakfk........keeaenaefllrayp.dlqiayldeepekeeeeekdlysaLvdgsseleengkrkpkfrikLsGnpiLGdGksdnqnhalifyrGeyiqliDanqDnYleecLkirsvLae.feeleldtvspyaeeleeeekkpvailGareyifsenigiLgdvaagkeqtfgtLfartlaeiggklhYGhPDflngifmttrGGvskaqkglhlneDiyaGlnallrGGrikhseYyqcGkGrDlGfgsilnfttkigaGmGeqllsreyyylGtqLpldrfLs 480
                  +  e  rr+ ffa sL t + +   + +  + + t LvP+Y e ++ +l+ + + +   + v +L+ L+ + + e+++f ++ +    e      +++ ++ e  a+ + ++l +++ G+ ++++ ++l+ ++  +l+ +t++ +         a k l +   ++     ++ + +   + +k+a+ k+++v+++q++++++        + +ae++e ++r+yp  +++ay+d ++ +++++e  + s+Lv+ + e e+     +++ri L+Gn  +G+ k+ nqn ++if+rG++iq iD+nq  ++ee Lk    L+  f +l               + + + i G re+if++++++L+ +++ +e  f+t ++r l +  +++hYGhPDf+ +i  +t GG++ka++g++l+eDi+ G+n  lrGGr + s+ +q+GkG+D+Gf +i+ f  ki+ G+ eqllsr++y+l +q +++r ++
  MMETSP0890-20130614|11675_1 120 KSVEVWRRLGFFASSLRTIVQNGglPAISMTKASTTLVPYYNETVIPTLESLEEST--SEGVNVLDLLRAISPMEFNNFLQRIQTNDLE----IGKNDATEIERFAAFRSQTLLRTASGLAYYERMLQLLGKLADALNQNTILDA-------ELA-KQLLEAPLQDH----TSYELSPPIDYAKFAQLKYTIVLSCQIFGEMRdapeksakRLQAEQIEGIMRQYPtSIRVAYIDKKISSSGSGEIVYASVLVKWDPEQEK---LIEIYRIVLPGNFLIGEAKPSNQNASMIFTRGDAIQAIDMNQSGFFEEYLKFPFFLNTsFGNL---------------ADEGPKIAGHREHIFTNEVSSLSSFMSMQESLFVTSTQRILDKTHARFHYGHPDFFGRIAAMTCGGMAKASRGINLSEDIFGGFNFALRGGRATQSDLIQVGKGKDIGFLQISTFLGKISQGNAEQLLSRDVYRLNNQTDIFRHMT 571
                  567999************9987532457777899****************995555..59********************998765444....44444555566899*******************************9988753.......333.33433333333....334455555889****************99987776665556899*********9459***************************99888...99*************************************************998875313333...............34567899***************************************************************************************************************************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.74
# Mc/sec: 1858.80
//
Query:       MMETSP0890-20130614|11680_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-50  170.9   4.4    1.7e-50  170.9   3.1    1.9  2  PF01991.13 ATP synthase (E/31 kDa) subunit
  ------ inclusion threshold ------
      0.051   13.5   0.1        3.4    7.7   0.0    2.7  2  PF05135.8  Phage gp6-like head-tail connector protein


Domain annotation for each model (and alignments):
>> PF01991.13  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.0      0.13     9e+02       4      24 ..      34      53 ..      17      66 .. 0.67
   2 !  170.9   3.1   2.5e-54   1.7e-50       1     198 []      70     276 ..      70     276 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHH CS
   PF01991.13  4 qeAeekaeeIkaeaeeefeie 24
                 +eAeeka  I  + + e++i+
  MMETSP0890-20130614|11680_1 34 EEAEEKATPIVLK-RSEVKII 53
                 4666666666555.3344444 PP

  == domain 2    score: 170.9 bits;  conditional E-value: 2.5e-54
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01991.13   1 fIrqeAeekaeeIkaeaeeefeiekeelveeekkkieeeyekkekqaelekkieiSnaklearlkvLkareelleevleeakkeLaevsedkeeYkellkeLivqalvkleepkvvvrsrkedleLvesvldkakeeykektkkdtvevivdedfl...........idciGGvvlesedgkirvdnTldarLelvkeellpeirkaLF 198
                  fI qeA+eka+eI+ ++e +f+iek+ lv ++k +++eey+ k +  ++e +i+ S+a+ ear +++k r+ell++++e ak+ +a v ++   Y +l+k+Livq+l+k+ee++vvv +r++d+eL +svl++a++ yk+ + k+t  ++  + +             +c+GGv+l +  g+i++dnTldar++lv++ellp+ir+ LF
  MMETSP0890-20130614|11680_1  70 FILQEAHEKANEIRIKTEHDFNIEKQMLVHNAKLALAEEYKAKARARQVEERIARSTALGEARVSKMKERDELLTKLIETAKESVAGVVKTP-GYGDLMKKLIVQGLIKIEENEVVVLCRNADVELCNSVLQDAISTYKNIILKQTGSKVNPK-VSinsqqskmlpdHSCSGGVILTACHGRIVCDNTLDARVKLVYDELLPTIRNDLF 276
                  8******************************************************************************************8.**********************************************98887754444444.224677888899888***************************************9 PP

>> PF05135.8  Phage gp6-like head-tail connector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00049       3.4      18      37 ..     136     155 ..     130     178 .. 0.85
   2 ?    2.9   0.0     0.015     1e+02      23      44 ..     197     218 ..     182     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00049
                  TTTTHHHHHHHHHHHHHHHH CS
    PF05135.8  18 ddsdDalLellikaaeeyik 37 
                    + D+lL++li++a+e + 
  MMETSP0890-20130614|11680_1 136 MKERDELLTKLIETAKESVA 155
                  5789************9886 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.015
                  HHHHHHHHHHHHHHHTTT--S- CS
    PF05135.8  23 alLellikaaeeyiknaigrdl 44 
                  ++L++ i+++++ i   +g+++
  MMETSP0890-20130614|11680_1 197 SVLQDAISTYKNIILKQTGSKV 218
                  5899***************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       893  (0.065316); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.97
# Mc/sec: 689.26
//
Query:       MMETSP0890-20130614|11681_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-14   51.4   0.0    6.4e-11   42.3   0.0    1.9  2  PF12796.2  Ankyrin repeats (3 copies)
    3.3e-10   40.0   0.0    6.7e-05   23.1   0.0    2.4  2  PF13637.1  Ankyrin repeats (many copies)
    3.9e-10   38.9   0.0    0.00017   21.1   0.0    4.1  4  PF00023.25 Ankyrin repeat
    7.2e-08   31.8   0.0      0.065   13.3   0.0    3.8  4  PF13606.1  Ankyrin repeat
    1.1e-06   28.5   0.0    0.00065   19.7   0.0    3.0  3  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.3e-14   6.4e-11       3      86 ..       5      93 ..       3      96 .. 0.92
   2 !   13.6   0.0   2.1e-05     0.058       4      55 ..      73     132 ..      72     146 .. 0.68

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 2.3e-14
    PF12796.2  3 lAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86
                  A++ +++  ++ +l++ga++++      +tpL+ A+  g+ ++v++Lle+ga+    +k+g+ p+  A+ +g++ +v+ L e+g  ++
  MMETSP0890-20130614|11681_1  5 XAVRADSIIEIQRILDAGAEINTrsgpgEQTPLMNAVLTGKENAVSVLLESGASTTIGEKDGYKPMDGAAYQGRAAIVRKLYEHGVPLD 93
                 57777888788999********999998888************************99999*************************8776 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.1e-05
    PF12796.2   4 AaengnlelvklLlekgadvdl.....getpLhlAa...eagnleivklLleagadvnak 55 
                  Aa +g++ +v++L e+g  +d      g++p+   +   +  + e+v   le ga + a 
  MMETSP0890-20130614|11681_1  73 AAYQGRAAIVRKLYEHGVPLDQvhprdGNRPVQRSCwgrQDRHSETVATFLELGAKLTAG 132
                  677788888888888887777777777777777666333556677777777777777554 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05     0.031      17      54 .]      15      53 ..       5      53 .. 0.87
   2 !   23.1   0.0   2.4e-08   6.7e-05       2      45 ..      67     111 ..      66     123 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-05
    PF13637.1 17 vklLlekgidinrt..desGntaLhiAalrgnieilklLl 54
                 ++ +l+ g++in +  ++   t+L  A+l+g  +++  Ll
  MMETSP0890-20130614|11681_1 15 IQRILDAGAEINTRsgPG-EQTPLMNAVLTGKENAVSVLL 53
                 6899**********6444.66*************999987 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.4e-08
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrg 45 
                  + +++ aa++gr  +v+ L+e+g+ ++++ +++Gn ++++ +++ 
  MMETSP0890-20130614|11681_1  67 YKPMDGAAYQGRAAIVRKLYEHGVPLDQVhPRDGNRPVQRSCWGR 111
                  568889**********************************99765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.023        62      17      31 ..      14      28 ..       5      29 .. 0.76
   2 !   21.1   0.0   6.2e-08   0.00017       3      29 ..      34      60 ..      33      64 .. 0.93
   3 !    6.3   0.0    0.0029         8       9      30 ..      73      94 ..      65      96 .. 0.86
   4 ?    2.8   0.0     0.039   1.1e+02      13      30 ..     110     131 ..     100     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.023
                 HHHHHHHTTSSTTHB CS
   PF00023.25 17 vvklLlsqGAdlnaq 31
                  ++  l++GA++n +
  MMETSP0890-20130614|11681_1 14 EIQRILDAGAEINTR 28
                 58899*******975 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 6.2e-08
                 CBHHHHHHHTTHHHHHHHHHHTTSSTT CS
   PF00023.25  3 fTPLHlAalrgnlevvklLlsqGAdln 29
                 +TPL+ A+l g  + v+ Ll+ GA+ +
  MMETSP0890-20130614|11681_1 34 QTPLMNAVLTGKENAVSVLLESGASTT 60
                 7***********************976 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0029
                 HHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25  9 AalrgnlevvklLlsqGAdlna 30
                 Aa+ g++ +v+ L ++G  l+ 
  MMETSP0890-20130614|11681_1 73 AAYQGRAAIVRKLYEHGVPLDQ 94
                 99***************99885 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.039
                  T....HHHHHHHHHHTTSSTTH CS
   PF00023.25  13 g....nlevvklLlsqGAdlna 30 
                  g    + e v  +l+ GA l+a
  MMETSP0890-20130614|11681_1 110 GrqdrHSETVATFLELGAKLTA 131
                  4566699***********9987 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11   3.1e+02       9      30 .]       6      27 ..       3      27 .. 0.80
   2 !   13.3   0.0   2.4e-05     0.065       3      27 ..      34      58 ..      32      61 .. 0.93
   3 !   11.2   0.0   0.00011      0.31       1      28 [.      65      92 ..      65      94 .. 0.90
   4 ?   -0.4   0.0      0.65   1.8e+03       2      28 ..     100     129 ..      99     131 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.11
    PF13606.1  9 AasngrielveaLlengadina 30
                 A++  +i  ++  l++ga in+
  MMETSP0890-20130614|11681_1  6 AVRADSIIEIQRILDAGAEINT 27
                 6666677779999*******96 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.4e-05
    PF13606.1  3 nTpLhlAasngrielveaLlengad 27
                 +TpL+ A+  g+ ++v+ Lle+ga 
  MMETSP0890-20130614|11681_1 34 QTPLMNAVLTGKENAVSVLLESGAS 58
                 8**********************85 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00011
    PF13606.1  1 nGnTpLhlAasngrielveaLlengadi 28
                 +G+ p++ Aa++gr ++v+ L e+g+ +
  MMETSP0890-20130614|11681_1 65 DGYKPMDGAAYQGRAAIVRKLYEHGVPL 92
                 68899999*****************876 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.65
    PF13606.1   2 GnTpLhlAas...ngrielveaLlengadi 28 
                  Gn p    +     ++ e v   le ga +
  MMETSP0890-20130614|11681_1 100 GNRPVQRSCWgrqDRHSETVATFLELGAKL 129
                  556666655543234788899999999865 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.16   4.4e+02      22      46 ..       5      29 ..       3      33 .. 0.86
   2 !   19.7   0.0   2.4e-07   0.00065       2      56 .]      19      73 ..      18      73 .. 0.89
   3 !    9.9   0.0   0.00028      0.76      15      43 ..      65      93 ..      63     105 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.16
    PF13857.1 22 lAakggalevvrlLlapgadlnlrd 46
                  A+++ +   ++ +l++ga +n+r 
  MMETSP0890-20130614|11681_1  5 XAVRADSIIEIQRILDAGAEINTRS 29
                 58888889999999*******9986 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.4e-07
    PF13857.1  2 lehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56
                 l++g++ + ++ +g +tpL++A+  g  ++v  Ll+ ga++++ ++dg  ++d A
  MMETSP0890-20130614|11681_1 19 LDAGAEINTRSGPGEQTPLMNAVLTGKENAVSVLLESGASTTIGEKDGYKPMDGA 73
                 7778666667888888***********************************9977 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00028
    PF13857.1 15 ggntpLhlAakggalevvrlLlapgadln 43
                  g+ p   Aa++g++ +vr+L+++g+ l+
  MMETSP0890-20130614|11681_1 65 DGYKPMDGAAYQGRAAIVRKLYEHGVPLD 93
                 68899999**************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.79
# Mc/sec: 485.34
//
Query:       MMETSP0890-20130614|11678_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   92.6   0.0    4.9e-26   90.9   0.0    1.9  2  PF03109.11 ABC1 family
    4.3e-06   26.5   2.1     0.0017   17.9   0.3    3.0  3  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   7.2e-30   4.9e-26       2     106 ..     175     279 ..     174     289 .. 0.95
   2 ?   -2.5   0.0      0.62   4.3e+03       3      17 ..     431     445 ..     429     448 .. 0.78

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 7.2e-30
   PF03109.11   2 elgkpveevFaefdeePlAaASiaQVHrAvlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskea.rldleelvdelskelaeeldfkrEAknaekfren 106
                  elg+++e++F+ fd+ePlA+ASiaQVH A   +ge+V+vKv++pgv+  +k+Dl  +++  k+l++i +e  rl +  ++++l+++++ eldf +EAkn ++ r  
  MMETSP0890-20130614|11678_1 175 ELGNSIESIFDYFDPEPLASASIAQVHAAI-YKGEDVVVKVRKPGVDLLLKADLGFIEIAGKALEFIAPELgRLAVADILQDLRTTMLDELDFFKEAKNLQEYRAW 279
                  89*************************885.56*************************************99****************************999875 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.62
   PF03109.11   3 lgkpveevFaefdee 17 
                  + ++++evF+ fd+ 
  MMETSP0890-20130614|11678_1 431 FAADLQEVFKAFDKI 445
                  567889999999985 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0011       7.2      70     136 ..      98     163 ..      25     208 .. 0.76
   2 ?   -0.5   0.0      0.11   7.4e+02      41      84 ..     274     317 ..     262     342 .. 0.76
   3 !   17.9   0.3   2.5e-07    0.0017     166     204 ..     358     393 ..     317     425 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0011
                  EEEEEE---HHBCCT.CSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHH CS
   PF01636.18  70 lfalleyvpgevler.klnarqlpallealaellaalhqadpaadpladflapyltllrllesataal 136
                    a++e+++ ++ +  +l +r l+ l+e+l+++  +l q+  a++p  +++  y+++l +l ++ ++ 
  MMETSP0890-20130614|11678_1  98 ARAIMEWIEERPETLeTLGPRFLRKLFERLGATYIKLAQF-IASSPTLFPS-AYVKELEKLLDSAPPV 163
                  568999*99999999999**********************.6655555555.6688888777774433 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.11
                  HHHHHHHCCSSS.....B--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
   PF01636.18  41 vallrlLakagi.....pvPevlagdtdddvlgllfalleyvpgevler 84 
                  +++ ++L  ag+      +P ++      +v+g  + +++++ g +++ 
  MMETSP0890-20130614|11678_1 274 QEYRAWLDSAGFleniaDCPIPYT-----EVSGKQVLVMTRLRGVPITS 317
                  566678888888777777888999.....99999999999999998877 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 2.5e-07
                  -EEB-SS-SGGGEEEETTTTEEEE---TT-BBE-TCHHH CS
   PF01636.18 166 pvllHgDlhpgNllvdpddgrvgviDfedaglgpplyDl 204
                   ++ H D h gNl+   ddgr+g+iDf+ +g  p+  ++
  MMETSP0890-20130614|11678_1 358 CSFFHADVHGGNLIAL-DDGRIGFIDFGIVGRVPV--EI 393
                  5789************.99*********9887754..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.36s 00:00:01.22 Elapsed: 00:00:00.76
# Mc/sec: 1734.21
//
Query:       MMETSP0890-20130614|11683_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-08   32.9   1.2    3.5e-07   30.4   0.8    2.2  1  PF01138.16 3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.8   2.6e-11   3.5e-07      16     132 .]      80     182 ..      65     182 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 2.6e-11
   PF01138.16  16 n.....GSaylelgdtkvlatvtgpieerpseerddaegeldveveyapfasverrregrpsdeeielsrlleralrpsillekkpk.skididvtvlssdggslldalinaaslALadagip 132
                        G a+++ g+t+v a+v +++     e+ d+    l  ev+  p +          s ++ + +r++e  ++++   +  +k + ++++++ ls+ g  l+da+ +aas+AL d++ip
  MMETSP0890-20130614|11683_1  80 LnscvvGTACVSNGSTQVFASVELKSAL---ES-DPL---LQFEVR--PGC----------SGRDFTWARRVEILISEVYTAPDLAKaLRLKVTLLSLSDGG-ALIDACFLAASAALTDSRIP 182
                  245555999*****************88...55.644...555555..544..........556689999999999999999877777**************.*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 971.32
//
Query:       MMETSP0890-20130614|11685_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-10   39.0   0.0    6.9e-10   38.6   0.0    1.2  1  PF00166.16 Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> PF00166.16  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0     5e-14   6.9e-10       2      92 ..      24     122 ..      23     123 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 5e-14
   PF00166.16   2 ikplgdrVlveraeeeektkggiilpdsakekplqGeVvaVGeGarnekge.kvpeevkvGdkVllpkysGtkvkv.......egkeyvvlkekdIlav 92 
                   ++l+d V ver +  e+t++g++lp ++   ++ ++V++VG+G   e+g  ++++ +k+Gd V+ +   G+  k+       + + +++++++dI av
  MMETSP0890-20130614|11685_1  24 TEALYDLVYVERISPPEQTSSGLFLPVKEDPPMHLAKVISVGTGLEGESGCrTQNKGIKPGDYVYTKFPWGIGPKDeqcgedgNIRRFSFIRYQDIAAV 122
                  579***********************9999999**************9997578899*******9765554433333355544457899*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.62
# Mc/sec: 490.87
//
Query:       MMETSP0890-20130614|11686_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.98
# Mc/sec: 586.86
//
Query:       MMETSP0890-20130614|11694_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-08   33.1   0.1    9.2e-08   32.0   0.0    1.6  2  PF13905.1  Thioredoxin-like
      1e-07   31.5   0.1    1.5e-07   30.9   0.1    1.3  1  PF00578.16 AhpC/TSA family
    8.1e-06   25.3   0.7    1.9e-05   24.1   0.5    1.8  1  PF08534.5  Redoxin
    4.7e-05   22.9   0.6    0.00024   20.6   0.5    2.0  2  PF00085.15 Thioredoxin
    0.00088   19.3   0.1     0.0016   18.4   0.0    1.5  1  PF13098.1  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.12   11.2   0.0       0.15   10.9   0.0    1.2  1  PF00837.12 Iodothyronine deiodinase


Domain annotation for each model (and alignments):
>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     4e-11   9.2e-08       2      95 ..      35     124 ..      34     125 .. 0.81
   2 ?   -3.2   0.0       3.7   8.5e+03      45      58 ..     144     157 ..     139     167 .. 0.61

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 4e-11
    PF13905.1   2 kivllyfaaswcppckaftpelkelyeklkaskdkveivyVsldrdeeefkkylkknkkpwlavp..fndkrrnkl.kklykvkaiPtlvvldkdge 95 
                  k+v+++f+++ c  c a +++l+e+ +k+k    +v ++ + ld   +   + +++n  +w +++  + + + +++ k+  ++k++P +vvl++dg 
  MMETSP0890-20130614|11694_1  35 KPVVIDFWTTKCVRCPACLSKLNEMATKFK----GVIFLSICLDD-LDFGAELVAEN--DWDNIThtYASTEVKEIaKSCWGFKSVPFIVVLGPDGA 124
                  89***************************8....66666666664.58999999999..6665552277777666615556**************95 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.7
    PF13905.1  45 drdeeefkkylkkn 58 
                  d+d+e++k++  ++
  MMETSP0890-20130614|11694_1 144 DNDKENVKNVAPNK 157
                  66666666655554 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   6.7e-11   1.5e-07       4      97 ..      10     106 ..       7     127 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 6.7e-11
   PF00578.16   4 kapdfelk..dtdgkkvslsdlkg.kpvvLffypkdfcpvCttelpalaelyeefkkkgvevigvsvdspe...shkkfaekne...lnfpllsDeegevaka 97 
                  +ap+ +l+  d++ +k +l+ l+  kpvv+ f+++  c  C++ l++l+e++ +fk  gv ++ +  d+ +   +    +++n+   ++ +++s e +e+ak+
  MMETSP0890-20130614|11694_1  10 QAPNLTLTlfDEENTKTTLHCLRAsKPVVIDFWTT-KCVRCPACLSKLNEMATKFK--GVIFLSICLDDLDfgaE---LVAENDwdnITHTYASTEVKEIAKS 106
                  89**999999999999******555**********.********************..************95554...4444444448888888887777775 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.5   8.3e-09   1.9e-05       2      99 ..       7     105 ..       6     168 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 8.3e-09
                  --------S-----TT---EEHHH.HTTSEEEEE---------IIIIIHHHHTHHHH.HH----EEEEE-SS-HHHHHHHHH...TT.TSEEE------HHH CS
    PF08534.5   2 aGdkaPdftlplvatdgktvslsd.fkgkkvvlvfvpgafcptCsaehpyleklaklakekgvdvvavvaqndafvkeawak...eglkipvlsDesasfak 99 
                  + ++aP++tl+l ++++++++l+   + k+vv+ f+ +  c  C a +  l++ a +   kgv ++ ++ ++ +f  e +a+   ++++++++s e +++ak
  MMETSP0890-20130614|11694_1   7 TKMQAPNLTLTLFDEENTKTTLHClRASKPVVIDFWTT-KCVRCPACLSKLNEMATK--FKGVIFLSICLDDLDFGAELVAEndwDNITHTYASTEVKEIAK 105
                  5689********************99************.999988877677888444..5777777776666666333333334433333333333333333 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.5     1e-07   0.00024      14      57 ..      30      72 ..      13      91 .. 0.81
   2 ?    0.0   0.0      0.26     6e+02      61     102 ..     100     144 ..      81     146 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1e-07
                 HHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEE CS
   PF00085.15 14 vaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvd 57
                    ++k+v+++f+++ C  C a  ++++++a+++k  v+++ + 
  MMETSP0890-20130614|11694_1 30 CLRASKPVVIDFWTTKCVRCPACLSKLNEMATKFK-GVIFLSIC 72
                 34468******************************.77777664 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.26
                  THHHHHH.TT--SSSEEEEESSSSEEE..EE---.-HHHHHHHHH CS
   PF00085.15  61 nkdlase.ygvegiPtlklfkngkkve..evegarekeklvaflk 102
                   k++a++ +g +++P ++++  ++  +   +  + +kekl++ l+
  MMETSP0890-20130614|11694_1 100 VKEIAKScWGFKSVPFIVVLGPDGATSfsGTGIGFTKEKLQSVLD 144
                  444443326788889888876666555433333478888888775 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.1e-07    0.0016       5      95 ..      34     125 ..      31     143 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.1e-07
    PF13098.1   5 gkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdge....kevkleekelgrkl.gvrgtPtivfldgeGkl 95 
                   k+v+++f++++C  C  +   l kln+ + ++k ++ ++++ +d+ +  +e v ++d      +  ++e ke+++   g +++P iv+l ++G +
  MMETSP0890-20130614|11694_1  34 SKPVVIDFWTTKCVRCPAC---LSKLNEMATKFK-GVIFLSICLDDLDFGAELVAENDWDnithTYASTEVKEIAKSCwGFKSVPFIVVLGPDGAT 125
                  69***************77...778889999997.88889999987776665555544434443444455668887655***********999974 PP

>> PF00837.12  Iodothyronine deiodinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.4e-05      0.15      72     140 ..       4      71 ..       1      99 [. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.4e-05
   PF00837.12  72 qaklGgdaPnsevvrlsgqrschildfaqgerPlvlnfGsctCPpflarldafkrlveefssvadfllv 140
                  + k+  +aPn  +   +  ++   l   ++ +P+v++f ++ C    a l++ + ++++f+ v+ fl +
  MMETSP0890-20130614|11694_1   4 KLKTKMQAPNLTLTLFDEENTKTTLHCLRASKPVVIDFWTTKCVRCPACLSKLNEMATKFKGVI-FLSI 71 
                  5667789*******************************98877666666666677777776543.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.86
# Mc/sec: 470.91
//
Query:       MMETSP0890-20130614|11691_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-45  153.3   1.9    4.5e-45  152.7   1.3    1.2  1  PF08603.6  Adenylate cyclase associated (CAP) C terminal
    8.3e-37  127.0   0.1    6.4e-36  124.0   0.1    2.0  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal
    0.00055   19.2   4.3      0.001   18.3   2.5    1.8  2  PF07986.7  Tubulin binding cofactor C
  ------ inclusion threshold ------
      0.013   15.2   0.9        2.3    8.0   0.0    2.9  2  PF08099.6  Scorpion calcine family
        6.8    7.0   8.6        6.5    7.1   0.1    3.1  3  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF08603.6  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   1.3   1.7e-48   4.5e-45       3     147 ..     289     439 ..     287     455 .. 0.88

  Alignments for each domain:
  == domain 1    score: 152.7 bits;  conditional E-value: 1.7e-48
                  --EEEE..---EEEEE-BBS-SS-EEEE--....TT-EEEE-EEEEEEEEEE--BSEEEEEEEEEEEEEES-B----EEEEEE----EESS--SEEEEES-B---EE--SCGTT-.EEEEES--S-EEEE----TT--EEEE----EEEEE- CS
    PF08603.6   3 Ppklel..egkkwvvenfedekelvleeve....lkqsvyifkCknstiqikgKvnaisldnckkvslvvdslvssvevvnsksvkvqvlgkvptisidktdgvqiyLskeslet.eivssksseiNinvpteedgdykElalpeqfktkid 147
                  Pp +e+  +g kw+ven+++e+ ++++ ++     k++vyi+ C ++ti ikgK +++ +d+c+k+++++ds +ss+evvn++s+k+q++g+vp++ idktdg+  yLs e ++  ++v+skss++ i++p+ + gd++E ++peqf++k +
  MMETSP0890-20130614|11691_1 289 PPLMEFqsRGMKWIVENQTKENGVITITMDpkegVKHTVYICTCYEATIDIKGKCKSVAVDSCQKCNVLFDSAISSLEVVNCRSMKCQTRGTVPSVAIDKTDGILTYLSPETIDItQFVTSKSSDMQISFPN-KAGDMVEAPIPEQFIHKAK 439
                  55555544899***********7777766622236799***************************************************************************644***************9.9***************974 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.1   2.4e-39   6.4e-36      13     303 ..       4     271 ..       1     282 [. 0.77

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 2.4e-39
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHHHHHHS----HH..HHHHHCHHHHHHHHH---TTCCGTTSTTHHHHHHHHTT---GGGGG--S----HHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHS----------..--CSC--XXXXXXXXXXXXXXXXXXXX........XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
   PF01213.14  13 sRLEavseslankhrasgtasepsaavagdpasveafdelvakalsefvelskklggeveeqaelvekafqlerallevAsksqkPdee..elaellkPiseeilevqklreknRsskeFnhLsavsegipllgWvavePkPvsyvkemkdsaqFytnrvlKefkesdkkqveWvksylallkelkaYiKeyhttGltWskkgdaaaaksalaavsasktaaPppPpppppPsvdtikdsvesaksdskgslgavFaelnkGeeitkgLkkvdddekthKnpelraksgktss 303
                  sRL  v+ +l  +++  +   ++ +++ +d+ +++afde++ ++l++fv+  ++lg   +  +++v+k+    r  l +Ask++kP+      + +lk  +e+ le       +R+  eF +  +v+eg+++ +W+ veP P  +v+ + + + F++n++  ++k++++ q+ +   + +l+++l  Y+Keyh tG+t++++g+++aa s ++a  a       +P + ++P   +++++ ++  +d k+ l         G+  t+gLkkv++d++t++     +k+++ + 
  MMETSP0890-20130614|11691_1   4 SRLSTVEAKLGVQQA--APVAAVPQQAGEDARFIKAFDEYCRDYLDPFVKACEELGC--TGCSDIVKKGWGGMREYLVMASKCRKPASFpdACLPFLKVCQEANLEAS--AAVQRGDFEFHQ-KTVAEGLQACSWLIVEPAPKDFVETFIGGSDFWANKIRVQYKKTNPAQIAFCDTFKQLITQLMPYVKEYHMTGVTFNPHGMEVAAYSPASAPPA------AAPKVKTAP---KVENAATGGLADLKNAL---------GSVSTSGLKKVTKDMQTWRSEYKGEKAPVGKA 271
                  566666655444333..3333444456779*************************97..57899**********************986659999****999876665..567899999976.79******************************************************************************66554443322222......233333444...44544555555444444.........5567*************987655444444333 PP

>> PF07986.7  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   3.3e+03      70     102 ..      95     127 ..      91     130 .. 0.80
   2 !   18.3   2.5   3.6e-07     0.001       4      52 ..     327     375 ..     324     416 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.2
                  E---SSEEEEES-E-EEEE------TTSHHHHH CS
    PF07986.7  70 ylsvssrPiiedsekirfapyntsypeleehlk 102
                  +l v++++ +e s  ++ ++++++ +++ e l+
  MMETSP0890-20130614|11691_1  95 FLKVCQEANLEASAAVQRGDFEFHQKTVAEGLQ 127
                  788888888999999999999999988887776 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.6e-07
                  EEE-S-BS-EEEE----S-EEEES-BS-EEE----SS-EEEES-BS-EE CS
    PF07986.7   4 vklenlsnctiylldplssltidnckdctivlgpvsgsvfiedcencki 52 
                  v +  + ++ti+++++++s+ +d+c++c++++    +s+ + +c+ +k 
  MMETSP0890-20130614|11691_1 327 VYICTCYEATIDIKGKCKSVAVDSCQKCNVLFDSAISSLEVVNCRSMKC 375
                  567789**************************************98775 PP

>> PF08099.6  Scorpion calcine family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00084       2.3       3      14 ..      92     103 ..      90     107 .. 0.90
   2 ?    4.5   0.1      0.01        28      15      26 ..     369     380 ..     366     382 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00084
    PF08099.6   3 CLPHLKlCKedk 14 
                  CLP LK C+e +
  MMETSP0890-20130614|11691_1  92 CLPFLKVCQEAN 103
                  ********9976 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.01
    PF08099.6  15 DCCsKKCKRRGT 26 
                   C s KC+ RGT
  MMETSP0890-20130614|11691_1 369 NCRSMKCQTRGT 380
                  699********9 PP

>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3      0.03        82      35      65 ..       2      32 ..       1      37 [. 0.79
   2 ?    7.1   0.1    0.0024       6.5      48      73 ..     201     225 ..     174     232 .. 0.56
   3 ?   -0.3   0.1      0.48   1.3e+03      50      67 ..     266     281 ..     233     289 .. 0.46

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.03
   PF00428.14 35 ikeliangsaklaaaaaaaaaaaaaaaaaaa 65
                 + + +++++akl +  aa+ aa +++a+++a
  MMETSP0890-20130614|11691_1  2 LSSRLSTVEAKLGVQQAAPVAAVPQQAGEDA 32
                 5677899999999888888888888888776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0024
   PF00428.14  48 aaaaaaaaaaaaaaaaaaaeeekkee 73 
                  ++aa +  a+a++aaa++ + ++k e
  MMETSP0890-20130614|11691_1 201 EVAAYSP-ASAPPAAAPKVKTAPKVE 225
                  4544444.444444444444444443 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.48
   PF00428.14  50 aaaaaaaaaaaaaaaaae 67 
                  a+++ a  ++  aa++++
  MMETSP0890-20130614|11691_1 266 APVGKAPVTK--AAPPKK 281
                  2222222222..222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.89
# Mc/sec: 1233.18
//
Query:       MMETSP0890-20130614|11693_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-22   79.9   0.1    4.4e-22   78.2   0.0    1.8  1  PF10294.4  Putative methyltransferase
    2.6e-08   33.3   0.1    1.1e-07   31.3   0.0    2.0  2  PF05175.9  Methyltransferase small domain
    8.2e-07   28.6   0.7    3.2e-06   26.7   0.2    2.2  2  PF13847.1  Methyltransferase domain
      4e-05   23.7   0.1    9.5e-05   22.5   0.1    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
    5.3e-05   23.5   0.0    0.00021   21.6   0.0    2.0  2  PF08242.7  Methyltransferase domain
      8e-05   23.0   0.0    0.00019   21.8   0.0    1.6  1  PF12847.2  Methyltransferase domain
    0.00013   21.0   0.0    0.00024   20.2   0.0    1.3  1  PF02527.10 rRNA small subunit methyltransferase G
    0.00098   19.0   0.1     0.0049   16.7   0.0    2.0  2  PF13659.1  Methyltransferase domain
     0.0029   17.9   0.0     0.0073   16.6   0.0    1.7  1  PF13637.1  Ankyrin repeats (many copies)
     0.0055   16.2   0.0      0.011   15.2   0.0    1.4  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
     0.0059   15.6   0.0     0.0092   15.0   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.029   14.5   0.0    1.6  1  PF13649.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.8e-25   4.4e-22      13     149 ..     111     254 ..     101     274 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.8e-25
    PF10294.4  13 tgnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDlee.llellkknielnkn............alsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdllek 149
                   g+  g  vW a+++l+ +l++++  +   ++ ++l+ +ELG+G+G+ G+a+a++ pe+kv ltD +e +l++ k n e n +            + ++k ++ +LdW  +  +++   +++Dli+ aD+vY    +++L +t++  +++
  MMETSP0890-20130614|11693_1 111 AGDRTGLGVWSASLILARWLLSMK--DNFMQNKKELTCIELGAGCGVPGLALAAAIPEIKVALTDFSEdALKNAKFNAEKNAQiydwkgsiennlQFENKLAVAQLDWFSHH-QEI---KQCDLIIGADLVYSPTLVPALTRTISTFTSD 254
                  56678999*************965..44568999*******************************97769**********987888888777777788999999****8766.444...568*********************9988764 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.79     9e+02      38      62 ..      39      63 ..      22      67 .. 0.78
   2 !   31.3   0.0   9.3e-11   1.1e-07      27      79 ..     138     190 ..     118     210 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.79
                 -------HHHHHHHH-TT----EEE CS
    PF05175.9 38 lGcGaGvlgaalakespelevtlvD 62
                 +++G+G +++ ++++++ +e  l+D
  MMETSP0890-20130614|11693_1 39 IATGNGQIATIALEHGSATEERLID 63
                 689******9999999887766655 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 9.3e-11
                  S-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH-- CS
    PF05175.9  27 lpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleank 79 
                  +++k++ + ++lG+G Gv g+ala++ pe++v l+D ++ A+++ak n+e+n+
  MMETSP0890-20130614|11693_1 138 MQNKKELTCIELGAGCGVPGLALAAAIPEIKVALTDFSEDALKNAKFNAEKNA 190
                  56668888******************************************996 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   3.2e+03      11      22 ..      40      51 ..      12      85 .. 0.65
   2 !   26.7   0.2   2.8e-09   3.2e-06       2      52 ..     141     190 ..     140     259 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.9
    PF13847.1 11 GCGtGylllela 22
                 ++G+G ++ ++ 
  MMETSP0890-20130614|11693_1 40 ATGNGQIATIAL 51
                 445555544444 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 2.8e-09
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklg 52 
                  k++++ ++lG+G G+ +l+la  + p++kv + D+se+a++ Ak +a+k+ 
  MMETSP0890-20130614|11693_1 141 KKELTCIELGAGCGVPGLALA-AAIPEIKVALTDFSEDALKNAKFNAEKNA 190
                  788999***************.99*********************999764 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   8.3e-08   9.5e-05      30      84 ..       1      56 [.       1      60 [. 0.92

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 8.3e-08
    PF12796.2 30 LhlAaeagnleivklLleaga.dvnakdkegntpLhlAvrnghlelvklLlekgad 84
                 +h+Aa++++ +++ lL++ ++ dv +k++ g++ L  A+ +g+  ++ + le+g+ 
  MMETSP0890-20130614|11693_1  1 MHYAAQQEQSACLALLCSEEKiDVLTKNEFGRSILTEAIATGNGQIATIALEHGSA 56
                 59****************87659******************************986 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-07   0.00021       2      71 ..     148     230 ..     147     245 .. 0.72
   2 ?   -1.9   0.0       3.7   4.3e+03      68      83 ..     312     327 ..     281     333 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.8e-07
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...............ssfDvvv 71 
                  e+G+G G    al++++p+i++  +D+s++a+  + +k+++++n ++  ++   ++ l+ + +               ++ D+++
  MMETSP0890-20130614|11693_1 148 ELGAGCGVPGLALAAAIPEIKVALTDFSEDAL--KNAKFNAEKNAQIYDWKGSIENNLQFENKlavaqldwfshhqeiKQCDLII 230
                  9*******************************..444444444444544444444434333335676677777777777777776 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.7
    PF08242.7  68 Dvvvasnvlhhlkdir 83 
                  D+ ++s++lh + +++
  MMETSP0890-20130614|11693_1 312 DILTSSFLLHRFSKTK 327
                  7777888888884444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.7e-07   0.00019       4      78 ..     145     233 ..     142     262 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.7e-07
    PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarena..............ksldleeriellqgdakeelsllerfDavllkg 78 
                  + ++lG+G G  +l+la + p+ kv   D+se++l+ a+ na              ++l+ e+++++ q d++ + ++  + D+++  +
  MMETSP0890-20130614|11693_1 145 TCIELGAGCGVPGLALAAAIPEIKVALTDFSEDALKNAKFNAeknaqiydwkgsieNNLQFENKLAVAQLDWFSHHQEIKQCDLIIGAD 233
                  6689**************99*******************88888888888766665557777777777788855555555566666544 PP

>> PF02527.10  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.1e-07   0.00024      44      79 ..     137     173 ..     126     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.1e-07
                  CS-GGC...EEE--------HHHHHHH-TTSEEEEEE CS
   PF02527.10  44 llkekrs.kviDvGsGaGlPGipLaiarpelkltLle 79 
                  ++++k++ ++i +G+G G+PG+ La a pe+k++L +
  MMETSP0890-20130614|11693_1 137 FMQNKKElTCIELGAGCGVPGLALAAAIPEIKVALTD 173
                  456666557*************************987 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.96   1.1e+03       8      23 ..      40      56 ..      38      81 .. 0.83
   2 !   16.7   0.0   4.3e-06    0.0049       2      81 ..     144     237 ..     143     292 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.96
    PF13659.1  8 gcGsGtfllaalell.a 23
                 ++G+G +++ ale++ a
  MMETSP0890-20130614|11693_1 40 ATGNGQIATIALEHGsA 56
                 89***********9842 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 4.3e-06
    PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl..............aervrvrqgdlrdlaellragsfdlvvt.npPyg 81 
                  ++++++g+G+G+  la++++  ++++  ++ ++ a++ a++n+++++               ++++ v+q d+  +++++  +++dl+++ +  y 
  MMETSP0890-20130614|11693_1 144 LTCIELGAGCGVPGLALAAAIpEIKVALTDFSEDALKNAKFNAEKNAQiydwkgsiennlqfENKLAVAQLDWFSHHQEI--KQCDLIIGaDLVYS 237
                  5799****************99********************99987778888888888888778888888888888766..68888875244444 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.4e-06    0.0073       5      50 ..       1      47 [.       1      51 [. 0.91

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.4e-06
    PF13637.1  5 LhyaaisgrlelvklLlek.gidinrtdesGntaLhiAalrgnieil 50
                 +hyaa++    +++lL++  +id+  ++e+G++ L  A+ +gn +i+
  MMETSP0890-20130614|11693_1  1 MHYAAQQEQSACLALLCSEeKIDVLTKNEFGRSILTEAIATGNGQIA 47
                 59***************655***********************9987 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.5e-06     0.011       5      83 ..     149     230 ..     146     233 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 9.5e-06
                  E---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH........HHHHHHHHHCEEEESSGCCGGG-SEEE CS
   PF02737.13   5 vGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklk...eeeveevlarisvttdleeavdadlvi 83 
                  +GaG    g+A ++a   ++V l+d se+al++a+ ++ek+ +    kg+++   + e + ++a+++  ++ +e++++dl+i
  MMETSP0890-20130614|11693_1 149 LGAGCGVPGLALAAAIPEIKVALTDFSEDALKNAKFNAEKNAQIYDWKGSIEnnlQFENKLAVAQLDWFSHHQEIKQCDLII 230
                  6888888899999***************************99999999999976656677788999999***********99 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     8e-06    0.0092     157     208 ..     136     198 ..     128     238 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8e-06
    PF06325.8 157 klvkege..evlDvGtGSGi..LaiaaakLgakkvvavDiDevAvkvakeNaelN........k 208
                  +++++++  + + +G+G G+  La+aa  +   kv  +D  e A+k ak Nae+N        +
  MMETSP0890-20130614|11693_1 136 NFMQNKKelTCIELGAGCGVpgLALAA-AIPEIKVALTDFSEDALKNAKFNAEKNaqiydwkgS 198
                  454444423889********5556655.577889999******************665555553 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.6e-05     0.029       2      85 ..     147     240 ..     146     263 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.6e-05
    PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelak................erlsskgl..kvkfvqadaralpfeegefdlvvcaglslehlspkq 85 
                  ++lG G G+ + al+ a    pe++v + D+se+al+ ak                e++ +  +  k  + q d  + ++e +++dl++ a l    +sp  
  MMETSP0890-20130614|11693_1 147 IELGAGCGVPGLALAAAI---PEIKVALTDFSEDALKNAKfnaeknaqiydwkgsiENNLQ--FenKLAVAQLDWFSHHQEIKQCDLIIGADL--V-YSPTL 240
                  689************998...78***************99666555555544433322211..122444444555555778888888888544..2.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.79
# Mc/sec: 1137.51
//
Query:       MMETSP0890-20130614|11695_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00024   21.1   0.0     0.0016   18.4   0.0    2.2  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-07    0.0016       3     103 ..      32     159 ..      30     160 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-07
                  BEEEEEEEE..............TSSSCEEEEEEEEET..TEEEEESSSSTTCECSECEEEE.CGGEEEEEEEETTSS....C..TTSSSSEEEEEETTT.......CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   3 keGyllkks..............ellktwkkryfvLts..nyLlyfksskkksykapkgsip.lndctvkkasstkfa....l..qkesnnyfeitfkdv.......esyllsaeseeerkrWvqalknll 103
                  ++G llkk+              +++++w  r+f+L      L yf +++    +++ g i  l ++ v+   + k +        +   +y+e++ +           + l a+s +e+++W+++l  ++
  MMETSP0890-20130614|11695_1  32 IKGLLLKKGgsrkaiininggylNRRRNWSLRWFYLDLnsASLRYFIDED---MERKVGEIRfLPGAFVQVPHEVKLRgrhaPrrHNAPVYYLELHRTADafgkeraIPFALRATSHDEFNDWIKSLTYCV 159
                  7899*******************************865449999*****9...577777666144556666666553233331458899999999999999****999*******************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 897.79
//
Query:       MMETSP0890-20130614|11692_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-60  202.2   0.0    5.9e-60  201.8   0.0    1.2  1  PF00009.22 Elongation factor Tu GTP binding domain
    1.2e-29  102.3   0.1      4e-29  100.6   0.0    1.9  3  PF03143.12 Elongation factor Tu C-terminal domain
    1.8e-16   59.8   5.2      7e-16   57.9   3.8    1.9  2  PF03144.20 Elongation factor Tu domain 2
    0.00014   21.7   0.0    0.00027   20.7   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
     0.0042   17.4   0.0      0.009   16.3   0.0    1.6  1  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.048   12.9   0.7      0.089   12.1   0.0    1.7  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.059   12.1   0.0       0.22   10.2   0.0    1.8  2  PF00437.15 Type II/IV secretion system protein
       0.11   12.4   0.0       0.19   11.6   0.0    1.3  1  PF10366.4  Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   3.5e-63   5.9e-60       1     187 [.      55     248 ..      55     249 .. 0.91

  Alignments for each domain:
  == domain 1    score: 201.8 bits;  conditional E-value: 3.5e-63
                  GGEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHH.HC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--.EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCH..........HHHHHHHHHHHHSC CS
   PF00009.22   1 kkirnigiighvDhGKtTltdallykagaiskrgeea.egerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvk.iivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkge..........gidaLleaivellp 187
                  k+++nig+ighvDhGKtTlt+a++++ +    rg  + ++ + +dk++eer+r iTi+++++++e  t++r+++++D+PGH+d++k++i+g++++Dga+lvv+a++G++pqT+e++ la+++g++ ++v++NK+D v ++el e+ve   ++ll+ y+++g  ++p+++gSal ++           i +L++a+++++p
  MMETSP0890-20130614|11692_1  55 KPHMNIGTIGHVDHGKTTLTAAITKVMSS---RGGGKfSSYEDIDKAPEERARKITINASHVEYE--TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGIPsLVVFLNKCDAVdDEELLELVELEIQELLDLYEYNGA-DTPIIRGSALCAIkeeqpqlgeeAILKLMQAVDSYIP 248
                  689*********************77754...44444333445**********************..**********************************************************************99999999999999**********6.************977777777766669******9998 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.3   7.3e+03      53      64 ..     282     293 ..     264     306 .. 0.68
   2 ?   -3.7   0.0       7.8   1.3e+04      32      47 ..     298     313 ..     293     323 .. 0.71
   3 !  100.6   0.0   2.3e-32     4e-29       6      96 ..     351     440 ..     347     441 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.3
   PF03143.12  53 efvkpGdnvkve 64 
                   ++++Gd+++v 
  MMETSP0890-20130614|11692_1 282 GVIQTGDEIEVI 293
                  567777777765 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 7.8
   PF03143.12  32 rTadvtgkivellkkl 47 
                  ++++ t++ ve+ kk+
  MMETSP0890-20130614|11692_1 298 KSIKTTCTGVEMFKKT 313
                  5677888888887664 PP

  == domain 3    score: 100.6 bits;  conditional E-value: 2.3e-32
   PF03143.12   6 tkfkAqvyvlnk.....ptpikagYrpvlyvrTadvtgkivellkkldsekkefvkpGdnvkvevelikpiavekgkrFaiReggrTvavGvvtev 96 
                  +kf+A+vyvln+     ++p++++Y+p++++rTad+tg +++l     +++ e+v+pGdn++++vel +p+a+ +g rFa+Regg+Tv++Gvv+++
  MMETSP0890-20130614|11692_1 351 QKFQAEVYVLNQkeggrHKPFFSNYKPQFFIRTADITG-TITL-----PDGIEMVMPGDNATLNVELLSPVAISEGLRFALREGGKTVGAGVVSKI 440
                  89************************************.999*.....99********************************************98 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   3.8   4.1e-19     7e-16       1      74 []     272     342 ..     272     342 .. 0.94
   2 ?   -2.6   0.0       3.3   5.7e+03      35      60 ..     386     411 ..     373     415 .. 0.66

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 4.1e-19
                  EEEEEEEEEE--EETTEEEEEET.TTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EEE CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilg.ndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtlt 74 
                  Gtv+tgrv++G+++ Gd+++++g +++s k   t+ +++e+f++ ld+ +ag+n+G+++++++ ++ + +G+++t
  MMETSP0890-20130614|11692_1 272 GTVVTGRVETGVIQTGDEIEVIGlSHKSIK---TTCTGVEMFKKTLDRGEAGDNIGILLRGTKRDE-VSRGMIVT 342
                  9********************998876555...*********************************.9****975 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.3
                  EEEEEETTCEESEEECEE--EEEESS CS
   PF03144.20  35 vrsletfngdldeavaganaGvivai 60 
                  ++++ t     + + +g+na ++v +
  MMETSP0890-20130614|11692_1 386 ITGTITLPDGIEMVMPGDNATLNVEL 411
                  55555554444455778888877765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07   0.00027       2     111 ..      60     178 ..      59     182 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.6e-07
                  EEEE--TT---HHHHHHHH......CSTCTEETS-TT-SSSESEEEE............ETTE.EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS...HHHHHHHHHHHHHHTCCCEEEE CS
   PF01926.18   2 vaivGrpNvGKStLinaLt......gekaakvsdypgtTrditenev............kkek.iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa...vlkeadkellneleakkplilv 111
                  ++ +G+   GK+tL  a+t      g    k s y    + ++e++             ++++ +  vD+PG +      +    +k+++  + ++d+++lvv+a++   +++++   l++++  ++p ++v
  MMETSP0890-20130614|11692_1  60 IGTIGHVDHGKTTLTAAITkvmssrG--GGKFSSYEDIDKAPEERARkitinashveyeTENRhYAHVDCPGHA------D---YVKNMITGAAQMDGAILVVSATDgpmPQTREHILLARQV--GIPSLVV 178
                  789****************4443320..33444444444444332212233333444432223467******43......3...56678899999*********7777665555555555555..6665555 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.3e-06     0.009       3      87 ..      61     157 ..      59     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.3e-06
    PF08477.8   3 vvvGdkgvGKssllsqlvgeefp............kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehell.lkkadaillvydltdee 87 
                    +G  + GK++l +++++   +            +k ++e   + t++   +e + +++ +   d+ g+++  k+ +     + d+++lv++ td+ 
  MMETSP0890-20130614|11692_1  61 GTIGHVDHGKTTLTAAITKVMSSrgggkfssyediDKAPEERARKITINASHVEYETENRHYAHVDCPGHADYVKNMI-TgAAQMDGAILVVSATDGP 157
                  5689999**********9999999*********9999999999999999999999999999999******99888645.45*************9975 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.7   2.9e+03      11      22 ..      68      79 ..      61      88 .. 0.71
   2 ?   12.1   0.0   5.2e-05     0.089     105     169 ..     135     201 ..     123     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.7
                 ---HHHHHHHHC CS
   PF02492.14 11 sGKTtLleklle 22
                  GKTtL  ++++
  MMETSP0890-20130614|11692_1 68 HGKTTLTAAITK 79
                 599999887775 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.2e-05
                  SHHHHHHEEE-EEEEEEETTTH.CHHHHHHHHHHHHHCT-SEEE.EE-CCCTTTT..HHHHHHHHHH CS
   PF02492.14 105 eeelksdlgldavvtvvdvknl.tegedkpekledqlaaAdliv.lnKiDlldaeadlekleedlrk 169
                  ++ ++  +++d+ + vv+++     +++++ +l +q+   +l+v lnK+D +d+e++le +e ++++
  MMETSP0890-20130614|11692_1 135 KNMITGAAQMDGAILVVSATDGpMPQTREHILLARQVGIPSLVVfLNKCDAVDDEELLELVELEIQE 201
                  567788999**********776755566667777788777765549*********999999887776 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.22      79     181 ..       6     111 ..       2     124 .. 0.78
   2 ?   -1.4   0.0      0.47     8e+02     160     196 ..     390     426 ..     383     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
   PF00437.15  79 frvvllPvvee.eklviR.kkssaslsle.dlaakgalkkklaevlrqavqargnilvsGgTgsGKttllnallaeinkd.derivtiEDpvElqlegenqvqlnak 181
                  fr  llP v++  ++ iR   ss+ + l  +  a+  +k+k++++ ++  + + ni   G    GKttl+ a+ + + ++   ++   ED      e +  + +na+
  MMETSP0890-20130614|11692_1   6 FRSRLLPYVRQrRTMPIRgLVSSSIYPLPpQAQANYVQKNKFSSTFERT-KPHMNIGTIGHVDHGKTTLTAAITKVMSSRgGGKFSSYEDIDKAPEERARKITINAS 111
                  7888999999988899997445555555414455566778888888888.88**********************999999889999999988888888888888777 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.47
   PF00437.15 160 vtiEDpvElqlegenqvqlnakkakvtfadllraaLR 196
                  +t+ D +E+ ++g n++  ++    v ++++lr aLR
  MMETSP0890-20130614|11692_1 390 ITLPDGIEMVMPGDNATLNVELLSPVAISEGLRFALR 426
                  788999*****999998766667999*******9999 PP

>> PF10366.4  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.19      15      55 ..     171     212 ..     164     217 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
    PF10366.4  15 sllgpLlrleNaCdlkeveeiLkk.eekikeLidlyygkklh 55 
                    + +L+   N+Cd  + ee L+  e +i+eL+dly++++ +
  MMETSP0890-20130614|11692_1 171 VGIPSLVVFLNKCDAVDDEELLELvELEIQELLDLYEYNGAD 212
                  5667899999************751669*********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.76
# Mc/sec: 1393.67
//
Query:       MMETSP0890-20130614|11700_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.5   6.1    1.1e-07   31.5   4.2    1.8  2  PF00397.21 WW domain
     0.0011   18.2   0.2     0.0029   16.9   0.0    1.8  2  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.31   2.1e+03      20      27 ..     136     143 ..     136     145 .. 0.86
   2 !   31.5   4.2   1.5e-11   1.1e-07       5      31 .]     146     172 ..     143     172 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.31
                  ETTT--EE CS
   PF00397.21  20 NheTgetq 27 
                  N+ T++t+
  MMETSP0890-20130614|11700_1 136 NKPTKTTT 143
                  7889*998 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 1.5e-11
                  EEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21   5 Weersddd.dGrvYYyNheTgetqWekP 31 
                  W+++ d + + r+YY++ eT++tqWekP
  MMETSP0890-20130614|11700_1 146 WRVALD-PkTRRTYYWHRETRKTQWEKP 172
                  998885.557*****************9 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.3e-07    0.0029       9      32 ..      35      58 ..      28      59 .. 0.94
   2 ?   -2.9   0.0       0.7   4.8e+03      19      25 ..     130     136 ..     129     136 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.3e-07
                 HHHHHHHTT------HHHHHHHHH CS
   PF02037.22  9 LKaeLkkrGLptsGkKaeLieRLk 32
                 L++ +++ + p+sG+++ Li RL+
  MMETSP0890-20130614|11700_1 35 LRKWCEAKNCPKSGNREALINRLM 58
                 9*********************97 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.7
                  -----HH CS
   PF02037.22  19 ptsGkKa 25 
                  +++G+K+
  MMETSP0890-20130614|11700_1 130 SCNGNKN 136
                  789**95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 623.76
//
Query:       MMETSP0890-20130614|11699_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-40  139.1   0.0    1.4e-40  138.9   0.0    1.1  1  PF02301.13 HORMA domain


Domain annotation for each model (and alignments):
>> PF02301.13  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0     1e-44   1.4e-40       2     206 .]       9     189 ..       8     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 138.9 bits;  conditional E-value: 1e-44
                  E---HHHHHHHHH---HHHHHH-----GGGEEEEE--.........-EEE--HHHHHHHHH...HHHHHHHTT-EEEEEEEEE..E.----EEEEEEEEEEE-TTGGG-SSS..............S-THHHHHHHHHHHHHHHHHHHTTSS--..-S-EEEEEEEEE..STTSCSST.TCEEE..--EEESSE..EEEEEEEEEESSE CS
   PF02301.13   2 eqqslklvkeflkvaissIlYlRglfPeeaFedrklydlklkkldpnlsseadqlidwlek...gvfdalekkyLkalvlvIyees.ktnevlEsYtFsfsydesgedssdegeslsisnekeeadeksakeikeeirallrqlitlvqflppLpeertltmkllyytdtppdyeppgfkkaesdsdeklienkepekvslgsvstghh 206
                  + +s+++v+ef+++ai+sIlY+Rg++P+e F ++ +y l +      +++ ++ l  ++++   +++ +le + +++lv+v++    +++++lE+++F +++       s+++++ +i+    +a  ks+k+i +ei+a++rq++++v+flp L  ++ + ++ll+yt   +  ++pg +++++  d+++i n   ++v+l+s++t++h
  MMETSP0890-20130614|11699_1   9 LSGSVEIVREFFEFAINSILYQRGIYPPENFSRVAKYGLGM------MVTTDEGLRSYMRDvlsQLNGWLETGDVQRLVVVVT--GvDSEKTLERWVFAVET-------SRCDKENTIT----KAATKSSKDITNEIQAIIRQITASVTFLPLL--DEPCAFDLLVYT--RKSSSVPG-TWEDT--DPRYIPNA--NEVKLRSFTTKIH 189
                  578**********************************4333......6***********************************..545899***********.......6665555555....5667899************************..88**********..9*******.***87..88888888..9**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.88
# Mc/sec: 612.70
//
Query:       MMETSP0890-20130614|11697_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   13.2   0.2       0.19   11.9   0.1    1.7  1  PF12766.2 Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> PF12766.2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.4e-05      0.19       3      63 ..     234     293 ..     232     324 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
    PF12766.2   3 pwrsllesalkkekkkkstsfqlaTvdeeegkPrvRtvvfRgfleekkeesdvltfttDvr 63 
                  +w++  ++++++++ ++++  ql+T++++  +P +R   fR+  +  k ++  +tf+t ++
  MMETSP0890-20130614|11697_1 234 SWEQESNTSVSNDRLSPMSPQQLSTLAPTIVTPPARSKLFRNRQTYMK-DRVYITFVTYKK 293
                  7999999999999**************98999**********999876.677788888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.81
# Mc/sec: 1464.44
//
Query:       MMETSP0890-20130614|11702_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.1   0.2      0.056   12.8   0.1    1.1  1  PF12869.2 tRNA_anti-like
       0.33   10.5   2.6        1.3    8.6   0.2    2.1  2  PF07332.6 Protein of unknown function (DUF1469)


Domain annotation for each model (and alignments):
>> PF12869.2  tRNA_anti-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.1e-06     0.056       4      64 ..       2      79 ..       1      88 [. 0.64

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.1e-06
    PF12869.2  4 lkkilviilillvlafvia...............laeayrakskadvekakaala..................visaedLlaaykanevaadqk 64
                 l+k++ +++++l  af                  +                 ++a                  + +a+dL  + +an+++a + 
  MMETSP0890-20130614|11702_1  2 LRKLITFAILALTAAFAPSaqvarsqftvrpsapT----------------RTIAeevevlvskslkkaemrlEATAKDLTRDIDANAKNAKDE 79
                 47888888888888888874444444433333321................22224455555555555666679****************9876 PP

>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00019       1.3      76     110 ..       5      41 ..       3      48 .. 0.87
   2 ?    2.4   0.1     0.016   1.1e+02      95     117 ..      49      71 ..      43      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00019
    PF07332.6  76 livavvllllAgil..alvgkrrlkakslapertiee 110
                  li++++l+l A+ +  a v+++++  ++ ap+rti+e
  MMETSP0890-20130614|11702_1   5 LITFAILALTAAFApsAQVARSQFTVRPSAPTRTIAE 41 
                  89999999999986447889999999********986 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.016
    PF07332.6  95 rrlkakslapertieelkedvea 117
                  + lk++   +e+t++ l +d++a
  MMETSP0890-20130614|11702_1  49 KSLKKAEMRLEATAKDLTRDIDA 71 
                  45777889999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1015  (0.0742393); expected 273.4 (0.02)
Passed bias filter:                      712  (0.0520772); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.47s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 370.69
//
Query:       MMETSP0890-20130614|11704_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-19   69.1   0.3    3.7e-19   68.5   0.2    1.3  1  PF10273.4 Pre-rRNA-processing protein TSR2
  ------ inclusion threshold ------
      0.084   11.6   0.1        0.1   11.3   0.1    1.1  1  PF07134.6 Protein of unknown function (DUF1383)


Domain annotation for each model (and alignments):
>> PF10273.4  Pre-rRNA-processing protein TSR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.2   5.4e-23   3.7e-19       2      81 ..      12      91 ..      11      92 .. 0.98

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 5.4e-23
    PF10273.4  2 feegvallLelWeaLqlAVennwGGpdsaekrdwlagavvdlftsnkevdqedieelLlqvmldeFevnveDdSaeeVAe 81
                 +e+gv++++++W+ L+lA++++w+  d +e+++++   ++ l+ + k+++ ++ie+lL +v++++F++ +eD+S+eeV++
  MMETSP0890-20130614|11704_1 12 LEHGVRAVFHRWTLLRLALDQGWANGDGKEQAEEMFASIMRLLLNDKKIYTDEIEDLLFDVLEKKFNTLAEDGSVEEVSA 91
                 799***************************************************************************85 PP

>> PF07134.6  Protein of unknown function (DUF1383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.5e-05       0.1     245     299 ..      58     113 ..      38     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
    PF07134.6 245 erviaDqlecLlfnvfnrndskv..ksrieriraLleklkkeiavetrvekeraeei 299
                  +++ +D +e Llf+v++++ + +  +  +e+++aLl k+ +e+a+  + e+ +++ +
  MMETSP0890-20130614|11704_1  58 KKIYTDEIEDLLFDVLEKKFNTLaeDGSVEEVSALLLKIRNECAE-RNYETANDVIL 113
                  56889***********7777766224589***********99444.44444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.84
# Mc/sec: 496.39
//
Query:       MMETSP0890-20130614|11701_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     8e-111  368.6   2.2   9.1e-111  368.4   1.5    1.0  1  PF00244.15 14-3-3 protein
     0.0049   16.4   0.2      0.011   15.4   0.2    1.6  1  PF06971.8  Putative DNA-binding protein N-terminus
  ------ inclusion threshold ------
      0.014   15.2   0.1        1.4    8.7   0.0    2.6  2  PF13424.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00244.15  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.4   1.5    2e-114  9.1e-111       2     235 ..       7     236 ..       6     237 .. 0.98

  Alignments for each domain:
  == domain 1    score: 368.4 bits;  conditional E-value: 2e-114
                  HHHHHHHHHHHHTT-HHHHHHHH---TT---.--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHT---------HHHHHHHHHHHHH---HHHH---TTTTHHHH---HHHHHHHHHH---HHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHS-TT-TTT---HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHHHHHHHHHHHT------ CS
   PF00244.15   2 eelvylaklaeqaeryddmveamkklvelkeeLsveernLLsvayKnvigarRaswrilssieqkeeskgkekkvklikeyrkkiekeLkeiCedvlelldkklipkassseskvFylkmkgDyyRYlaEfssgeerkeaaekaleaYkeAleiaeselkpthpirLglaLnfsVFyYEilnspekAcelakqafdeaiaeldslseesykdstlimqLLrdNltlWtseeeee 235
                   +lvylaklaeqaer+d+mve++k+++++++eLsveernLLsvayKnvig+rRaswr++ssieqk++s+    k++li++y++kie+eL++iCed+l+++++klip ++ +e kvFy+kmkgDyyRYlaEf+++++rk+ +++aleaY+ A++ia++ l+pthpirLglaLnfsVFyYEil+sp++Ac++akqafd+aiaeld+lseesykdstlimqLLrdNltlWts++ ++
  MMETSP0890-20130614|11701_1   7 GDLVYLAKLAEQAERFDEMVEHIKSVAQFQQELSVEERNLLSVAYKNVIGSRRASWRVISSIEQKSDSD----KTALITNYKSKIETELEDICEDILNIINEKLIPISTGDEGKVFYHKMKGDYYRYLAEFQTSDKRKTSSSEALEAYQVASTIATKALPPTHPIRLGLALNFSVFYYEILSSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNPDQ 236
                  589**************************************************************8765....9************************************************************************************************************************************************************9887 PP

>> PF06971.8  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   2.3e-06     0.011      14      42 ..     126     154 ..     124     158 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.3e-06
                  HHHHHHHHHH----B--HHHHHHHHT--H CS
    PF06971.8  14 YyryLeeLkeegvervsSkelseaigida 42 
                  YyryL e+++++++++sS e  ea ++ +
  MMETSP0890-20130614|11701_1 126 YYRYLAEFQTSDKRKTSSSEALEAYQVAS 154
                  *******************9888888855 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.01        47       9      51 ..      10      53 ..       8      64 .. 0.79
   2 ?    8.7   0.0   0.00031       1.4      22      73 ..     144     197 ..     120     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.01
    PF13424.1  9 nnlalvlrrlgdydeAlelyekalellrelg.ddhpdtaralnn 51
                  +la + ++ +++de  e+++ + + ++el  ++   + +a+ n
  MMETSP0890-20130614|11701_1 10 VYLAKLAEQAERFDEMVEHIKSVAQFQQELSvEERNLLSVAYKN 53
                 5899999************9999999666642555556666655 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00031
    PF13424.1  22 deAlelyekalel.lrelgddhpdtaralnnlanlyla.lgdydeAleylekAl 73 
                   eAle y+ a ++  + l+++hp ++ + +n +  y++ l   d A    ++A 
  MMETSP0890-20130614|11701_1 144 SEALEAYQVASTIaTKALPPTHPIRLGLALNFSVFYYEiLSSPDRACHIAKQAF 197
                  59***********9999*****************99996667777888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       916  (0.0669982); expected 273.4 (0.02)
Passed bias filter:                      625  (0.0457139); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.64
# Mc/sec: 954.80
//
Query:       MMETSP0890-20130614|11703_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.8    7.6  12.3        1.4    8.6   0.8    3.9  3  PF02183.13 Homeobox associated leucine zipper


Domain annotation for each model (and alignments):
>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.8    0.0001       1.4       7      43 ..     137     173 ..     134     175 .. 0.82
   2 ?    4.0   0.1    0.0028        38      18      40 ..     212     234 ..     211     239 .. 0.81
   3 ?   -0.1   0.5     0.052   7.2e+02      25      44 ..     258     277 ..     253     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0001
   PF02183.13   7 YelLKrnydaLkaendsLqkEkekLraevlsLkeklq 43 
                  Y+ LK+   + +++n +L +++ +L ae++s +++ q
  MMETSP0890-20130614|11703_1 137 YNELKSELWKAQEKNNALSNHNHSLEAELVSARARIQ 173
                  55566666666789*****************999887 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0028
   PF02183.13  18 kaendsLqkEkekLraevlsLke 40 
                  k+e+d+L +   kL+ae ++ ++
  MMETSP0890-20130614|11703_1 212 KEEHDALAQSRFKLHAETEAWRA 234
                  78999999999999999887665 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.052
   PF02183.13  25 qkEkekLraevlsLkeklqe 44 
                  ++Ek+ L++++  L+ +l +
  MMETSP0890-20130614|11703_1 258 RAEKKLLLKQIRDLQKRLAK 277
                  579999********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1252  (0.091574); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:01.02
# Mc/sec: 1029.02
//
Query:       MMETSP0890-20130614|11706_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.2e-116  386.5   1.8   6.3e-116  386.2   1.3    1.1  1  PF00297.17 Ribosomal protein L3


Domain annotation for each model (and alignments):
>> PF00297.17  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.2   1.3  4.6e-120  6.3e-116       1     263 []      50     344 ..      50     344 .. 0.99

  Alignments for each domain:
  == domain 1    score: 386.2 bits;  conditional E-value: 4.6e-120
                  ----EEEEEE-------STTSEEE-EE-EBE---EE----B----S-----------SS---TSSSTTBSS-....................-------HTTTTGGGS-S---EE--EE-TTSSSSS-SS-----EE----.-CHHHHHHHHTTTT..S-B-TTSS--SS-BEEEEE----------TTT-------TTTT--.--S-S-----SSSS--SSS----------EEETTEB-SB---..............S-SSS-----TT-----S-EBE-B-------STS--B- CS
   PF00297.17   1 KaGMthivreldkpgsktekkeeveavTvietppmvvvqvktyeetprGlrslktvwaehlseevkrrlykn....................edgkkaievelekikkkasvkrvlahtqkrklklkqkkahlaeirvngg.tiaekvdfareelevgktvkvedvFeegelvdvigvtkGkGfeGvvkRwgvkklprkhgrgllRkvgsiGawhparvlktvkraGqkGyekrtelnkkivridk..............ekeitPmGGfvhyGevendlllvkGsvpGpkkrlvtlr 263
                  KaGMth+vr++d+pgsk +kke veavT++e+ppm +v++++y+etp+Glrsl+t+wa+hls+evkrr+ykn                    ed+ ++ + +le+ikk+++v+rvlahtq+rklkl+qkkahl+ei+vngg t+++kvdfa+  +e  +++++++vF+ +e++dv g t+G+G+eGvv+Rwgv++lprk++rg lRkv++iGawhparv++tv+r Gq+Gy++rte+nkki+ri+k              ek+itP+GGf+hyG+v++d +++kG+v+G kkr +tlr
  MMETSP0890-20130614|11706_1  50 KAGMTHVVRDVDRPGSKLHKKEIVEAVTILEAPPMIIVGIVGYVETPNGLRSLTTIWAHHLSDEVKRRFYKNwyqskhkamtkyakkyedlaEDDDASPSQQLERIKKYCTVVRVLAHTQIRKLKLRQKKAHLMEIQVNGGaTVSDKVDFAKGLFE--QEISIDSVFSPNEMIDVCGATRGHGTEGVVTRWGVTRLPRKTHRG-LRKVACIGAWHPARVSFTVARSGQNGYHHRTEMNKKIYRIGKagdpksasteadltEKSITPLGGFPHYGQVNEDWVMLKGCVAGSKKRCLTLR 344
                  9******************************************************************************************9999999*****************************************87589************..*********************************************.********************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:00.92
# Mc/sec: 1026.27
//
Query:       MMETSP0890-20130614|11711_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-16   58.5   0.0    6.9e-16   58.2   0.0    1.1  1  PF08212.7 Lipocalin-like domain


Domain annotation for each model (and alignments):
>> PF08212.7  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0     5e-20   6.9e-16       1     127 [.      16     148 ..      16     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 5e-20
    PF08212.7   1 vdlkrYlGtWyeiArlpmrfergcvdvtaeYtlrdd.gtiaVenrcrk..vdgklkeiegkAkvedpaseaklkVsFlkefl...vvkgdYwvleldddyslalvgspdrkylwilsRtpqlseeqleqllek 127
                  vd+k+ lG Wy+i+  p ++e++++++++ Yt  +  g i+V +++    +d ++k+   ++    + + +++k++ l++++    +      ++ld++ ++++vg  +r y w+++R+p+++++ le++ + 
  MMETSP0890-20130614|11711_1  16 VDIKKMLGAWYVIGFCPLWLEKDAYNAREIYTAGKKpGLIDVSYTFTPggFDTPVKSLPQRGVQWYDDKPDSWKIQLLGPITmpyIMIKASDPMALDNEDAWFVVGWRSRAYCWVMARKPTMDDALLEEIKTS 148
                  8*******************************9765269******98777888*********9999999**********444554333333447899****************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 539.90
//
Query:       MMETSP0890-20130614|11709_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 1193.97
//
Query:       MMETSP0890-20130614|11715_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-10   39.8   0.0    0.00027   21.2   0.0    2.3  2  PF13637.1  Ankyrin repeats (many copies)
    1.2e-08   35.0   0.0    7.9e-08   32.4   0.0    2.1  2  PF12796.2  Ankyrin repeats (3 copies)
    5.8e-08   32.6   0.1     0.0014   18.7   0.0    2.6  2  PF13857.1  Ankyrin repeats (many copies)
    4.8e-07   29.1   1.6     0.0094   15.6   0.0    2.9  3  PF00023.25 Ankyrin repeat
     0.0048   16.9   0.1       0.81   10.0   0.0    2.5  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.078   12.6   0.0       0.14   11.8   0.0    1.4  1  PF04282.8  Family of unknown function (DUF438)
       0.62    9.4   5.5       0.96    8.8   3.8    1.3  1  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.4e-07   0.00027       8      53 ..      41      92 ..      35      93 .. 0.84
   2 !   16.3   0.0   4.6e-06     0.009       1      41 [.     113     154 ..     113     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.4e-07
    PF13637.1  8 aai.sgrlelvklLlek.gidinrt...desGnt.aLhiAalrgnieilklL 53
                  a  +g+l++ k L+++ +++++     +++ ++ + hiAalrg+ eil++L
  MMETSP0890-20130614|11715_1 41 KATfDGNLKAMKALYYFyRKEPDGFgacNREDRSmPSHIAALRGHTEILEWL 92
                 44459**********98899977775558888878****************9 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 4.6e-06
    PF13637.1   1 gltaLhyaaisgrlelvklLlek.gidinrtdesGntaLhiA 41 
                  g+t+L  aa++g+ ++v +Ll+   + +   d++G+t+ + A
  MMETSP0890-20130614|11715_1 113 GHTPLWLAAAWGWNQCVDFLLSLpQVHPTIPDNDGFTPEQAA 154
                  689******************9966889999*******8876 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0     4e-11   7.9e-08       5      80 ..      43     134 ..      22     142 .. 0.85
   2 ?    0.0   0.0      0.49   9.7e+02      55      78 ..     143     166 ..     136     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 4e-11
    PF12796.2   5 aengnlelvklLle.kgadvdl.....get....pLhlAaeagnleivklLle.......agadvnakdkegntpLhlAvrnghlelvklLle 80 
                     gnl+++k L     +++d      + +    p h+Aa +g++ei+++L +          + n++d+ g+tpL lA+  g   +v++Ll+
  MMETSP0890-20130614|11715_1  43 TFDGNLKAMKALYYfYRKEPDGfgacnR-EdrsmPSHIAALRGHTEILEWLASlhwydgrFVTNFNTRDDGGHTPLWLAAAWGWNQCVDFLLS 134
                  5568888888887655566665666541.24578********************99988766788**************************98 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.49
    PF12796.2  55 kdkegntpLhlAvrnghlelvklL 78 
                   d++g tp  +A r g  e+++ +
  MMETSP0890-20130614|11715_1 143 PDNDGFTPEQAARRVGYNEIAQAI 166
                  467899******999999999876 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.9e-07    0.0014       8      53 ..      67     117 ..      64     120 .. 0.87
   2 !   13.9   0.0   2.2e-05     0.043      10      56 .]     107     154 ..     103     154 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.9e-07
    PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLl.......apgadlnlrdsdgltal 53 
                  ++n++d++   p h+Aa +g++e++++L        ++  + n+rd  g t+l
  MMETSP0890-20130614|11715_1  67 ACNREDRS--MPSHIAALRGHTEILEWLAslhwydgRFVTNFNTRDDGGHTPL 117
                  57888888..******************9888888888888888888888887 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.2e-05
    PF13857.1  10 natdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  n++d gg tpL lAa  g  ++v++Ll  p++++++ d+dg t+ + A
  MMETSP0890-20130614|11715_1 107 NTRDDGGHTPLWLAAAWGWNQCVDFLLsLPQVHPTIPDNDGFTPEQAA 154
                  88999999************************************9877 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.4e-05      0.14       7      21 ..      78      92 ..      76      97 .. 0.90
   2 !   15.6   0.0   4.8e-06    0.0094       2      23 ..     113     134 ..     112     145 .. 0.89
   3 ?   -2.2   0.1         2   3.9e+03       1       5 [.     146     150 ..     146     150 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.4e-05
                 HHHHHTTHHHHHHHH CS
   PF00023.25  7 HlAalrgnlevvklL 21
                 H+Aalrg++e++++L
  MMETSP0890-20130614|11715_1 78 HIAALRGHTEILEWL 92
                 *************99 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 4.8e-06
                  SCBHHHHHHHTTHHHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLls 23 
                  G TPL lAa +g  ++v +Lls
  MMETSP0890-20130614|11715_1 113 GHTPLWLAAAWGWNQCVDFLLS 134
                  99*******************8 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2
                  TSCBH CS
   PF00023.25   1 dGfTP 5  
                  dGfTP
  MMETSP0890-20130614|11715_1 146 DGFTP 150
                  8***9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00042      0.81       7      24 ..      78      95 ..      73     100 .. 0.88
   2 ?    4.1   0.0     0.032        63       2      24 ..     113     135 ..     112     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00042
    PF13606.1  7 hlAasngrielveaLlen 24
                 h+Aa +g++e++e+L + 
  MMETSP0890-20130614|11715_1 78 HIAALRGHTEILEWLASL 95
                 9*************9876 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.032
    PF13606.1   2 GnTpLhlAasngrielveaLlen 24 
                  G TpL lAa  g  + v++Ll+ 
  MMETSP0890-20130614|11715_1 113 GHTPLWLAAAWGWNQCVDFLLSL 135
                  88********9988889999876 PP

>> PF04282.8  Family of unknown function (DUF438)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     7e-05      0.14      38      67 ..       8      37 ..       5      41 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7e-05
    PF04282.8 38 EqeLiaeGleveeiqkLCdvHaevfkgaie 67
                 E +L +e +++ee q+LC+v  +   g i+
  MMETSP0890-20130614|11715_1  8 EGALPQEEMSPEEMQELCSVYTKTYDGHIS 37
                 6678899*************9988888776 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.8   0.00049      0.96     101     139 ..     168     214 ..     165     215 .] 0.65

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00049
                  EE-EEE...................----XXXXXXXXXXXXXXXXXX CS
   PF03066.10 101 isGqhl.valeedeslde.......eddeedeeeeddeedddeeeee 139
                  i +++l v++ e++ +de       ++ ee  ++e+d+e+dd++ee 
  MMETSP0890-20130614|11715_1 168 IRAKELnVVVPENSYWDEpdkrwyiKKAEESPDQEQDDEEDDDDEEM 214
                  55555425566777788899999997777777777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.98
# Mc/sec: 525.73
//
Query:       MMETSP0890-20130614|11717_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-14   50.9   0.0    3.4e-13   49.1   0.0    1.9  2  PF00782.15 Dual specificity phosphatase, catalytic domain
  ------ inclusion threshold ------
      0.064   12.4   0.0      0.091   11.9   0.0    1.3  1  PF13407.1  Periplasmic binding protein domain
      0.074   11.8   0.5        0.1   11.3   0.3    1.1  1  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       0.5   2.3e+03      33      50 ..      73      97 ..      55     112 .. 0.57
   2 !   49.1   0.0   7.5e-17   3.4e-13      17     132 ..     140     261 ..     129     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.5
                 ECCTT---EEEE--.---......S CS
   PF00782.15 33 nadkkseieylrip.ved......e 50
                  + ++s+i++ +i   +d      +
  MMETSP0890-20130614|11717_1 73 STTTESSINKNQIRpCNDeegqeqQ 97
                 4556677777777767774433333 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 7.5e-17
                  ----EEEETTSSSSEE....ECCTT---EEEE-----STT--CGGGHHHHHHHHHHHCC----EEEE-----HHHHH...HHHHHHHHHCT-HHHHHHHHHHHHS.TT-SS-STTHHHHHHHHH CS
   PF00782.15  17 lgitlvinvtkevpkn....nadkkseieylripvedetetkiskeleeavefiekaeqkgkkvlVHCqaGisRSat...liiaYlmktknlslneAyefvkerr.skispnagflrqLleyer 132
                  +g+t v++ + + +      ++ +  ++++l+ip    +++++ + l ea +f+++a+++g+ v+VH +aG sRS t   l++ Y++k++n +l++A++ ++     +isp+a++   L+e+e+
  MMETSP0890-20130614|11717_1 140 KGVTSVVSTIGSPN-VdsrtQLPESFQYHMLDIPTTG-ETDALLRPLHEACDFMDEAMSEGGIVFVHSRAGFSRSDTailLVLGYMIKYQNNKLRDAIDSLSCIMkHTISPSAKLRPCLVEFEE 261
                  55666665553222.1233444455567888888666.78999999*****************************764457889*****************7665599*****99999999986 PP

>> PF13407.1  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05     0.091      34      85 ..      85     147 ..      74     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2e-05
    PF13407.1  34 v...gdaenda.aeQvaqieda.iaqg....vdgIivapvdstalapalkk.akaaGIp.Vva 85 
                  +   +d+e++  +eQ ++++++ i++     +dg++v++v++t l + l++ + ++G+  Vv+
  MMETSP0890-20130614|11717_1  85 IrpcNDEEGQEqQEQHDVVNKFdISSAigqvFDGLLVSAVSGTRLGTSLEAsLLEKGVTsVVS 147
                  2344456666669999999999999999999***************99999899999952444 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   2.2e-05       0.1     153     243 ..      26     120 ..       6     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.2e-05
    PF14362.1 153 eaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqaeletlkaq...ldaaqaeleankrkaaleeeraakvaeeqaan...sandGll 243
                     ++vn + ++v    +G++++ + G+G +  + ke+ +++     +++++   ++ +++  +   +++++++e++++v++++  +   + +dGll
  MMETSP0890-20130614|11717_1  26 NCVRKVNSMSKKVGNTTDGSQKKHRGGRGNNVSRRKEKTQSKNVLTPSTTTEssiNKNQIRPCN--DEEGQEQQEQHDVVNKFDISSaigQVFDGLL 120
                  5567899999999999*************99999999999988766666666334444445555..9**************9998888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.45s 00:00:01.06 Elapsed: 00:00:00.60
# Mc/sec: 1226.14
//
Query:       MMETSP0890-20130614|11716_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-18   66.6   0.4    8.3e-10   38.1   0.0    2.8  3  PF00579.20 tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> PF00579.20  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.11   1.5e+03     210     271 ..     181     244 ..     171     258 .. 0.44
   2 !   25.6   0.0   3.7e-10     5e-06       5      98 ..     325     425 ..     321     459 .. 0.75
   3 !   38.1   0.0     6e-14   8.3e-10     153     230 ..     495     576 ..     484     618 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.11
                  TTCCHCHHHHHHHHSCTS-CC...CHHHHHHHHHTCCHHHHHHHHHHHHTEC...CTSHHHHHHHHHH CS
   PF00579.20 210 Lddekesvkkkiqkavtdsde...evekllklktelsnelierleaelgkkp...kkeaeellaeevt 271
                  L  +k +v  k++ a  ++d    e + +++ +    +++i+ +++e  + +    ++a+++++ee++
  MMETSP0890-20130614|11716_1 181 LAGKKRQVSAKFRVASEENDIfaaESHIDEEEF----TKVIQLYTHEYLRAKlidLQKAQRVVEEEKK 244
                  555566666666655555555322222222222....2222222222222222233344444444433 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 3.7e-10
                  ..EEEE-EETTSS.-BGGGHHHHHHHHHHHH..........TTSEEEEEEEHHHHCCTTTT.SSHHHHHHHHHHHHHHHHHHHHHHCHCTTCEEEEGGGSTTCH..C CS
   PF00579.20   5 plrvysGidPTgk.lHlGylvplkklvqlqk..........agyevffliaDltAligdpskaeerklrkreeelenaikaqlakgldpekaeivlnsdwlekl..e 98 
                  p+ +y+G  P+++ +HlG+lvp++   +lq+           + e f++ ++  +  gd +   +   r+ ++e     k+++a+g+dp+++ i+   ++++++  +
  MMETSP0890-20130614|11716_1 325 PFYLYTGRGPSSSaMHLGHLVPFMMTQWLQEalgvplvvqmTDDEKFLWKGEYNTSSGDYN---LDHYRTLTREN---AKDIIACGFDPKRTFIFSDCEYIQHMypN 425
                  6889***************************955555555555555555555555555555...44444444444...466**********9999999999998444 PP

  == domain 3    score: 38.1 bits;  conditional E-value: 6e-14
                  EEE---TTHHHHHHHHHHHHHHHHH...TTSS-EEEB---BBSSETTS.B--TT-SSGS-BTTCCHCHHHHHHHHSCTS-CC CS
   PF00579.20 153 lvpgGsDQkqhielgrelarrfnkk...vfkkpvgltvplltgldGek.KmSKSagnsaIfLddekesvkkkiqkavtdsde 230
                  l p   DQ++ ++l+r++a+++         kp  l  ++ + l+G   KmS+S++nsaIfL+d++++++ ki+       +
  MMETSP0890-20130614|11716_1 495 LIPCAIDQDPYFRLTRDIAKKMCPAthrLEGKPALLHSKFFPPLQGSHgKMSSSDDNSAIFLTDTPDDIERKIMTLAFSGGR 576
                  666668****************9998877779999999999999999889***********************987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.40s 00:00:01.46 Elapsed: 00:00:00.98
# Mc/sec: 1638.33
//
Query:       MMETSP0890-20130614|11721_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.68
# Mc/sec: 155.06
//
Query:       MMETSP0890-20130614|11722_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-15   54.7   0.1    9.2e-15   54.0   0.0    1.3  1  PF02617.12 ATP-dependent Clp protease adaptor protein ClpS
  ------ inclusion threshold ------
      0.033   13.8   0.1      0.061   13.0   0.0    1.4  1  PF00614.17 Phospholipase D Active site motif


Domain annotation for each model (and alignments):
>> PF02617.12  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   1.3e-18   9.2e-15       5      80 ..      76     145 ..      74     147 .. 0.94

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 1.3e-18
   PF02617.12   5 kqykViLlNDdvhtmefVievLqkvfgmteeqAeqimlevhreGravvgvgtleeaetkveqvqrkgrekgsPLsa 80 
                  k+++ +L++D+v+t e+V +vL++ +g+ e++A+++m+++h++  avvg++tle+ae + + ++++g      L a
  MMETSP0890-20130614|11722_1  76 KKHQLLLFDDPVNTREYVSKVLCTKIGLAEAEAYEVMMTAHTSSCAVVGIYTLERAEFYLKVMKDAG------LVA 145
                  57889**********************************************************9999......666 PP

>> PF00614.17  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.9e-06     0.061      14      28 .]       8      22 ..       8      22 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.9e-06
   PF00614.17 14 devafvGgaNLcdgr 28
                 dev++vG++N+c+++
  MMETSP0890-20130614|11722_1  8 DEVVVVGNFNWCGES 22
                 89**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 651.64
//
Query:       MMETSP0890-20130614|11729_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-11   43.7   0.1    1.5e-11   43.6   0.1    1.0  1  PF00736.14 EF-1 guanine nucleotide exchange domain


Domain annotation for each model (and alignments):
>> PF00736.14  EF-1 guanine nucleotide exchange domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   1.1e-15   1.5e-11      33      88 ..       2      58 ..       1      59 [] 0.91

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 1.1e-15
                 -..--EEEEEE-----EEEEEE---------HHHHHHHH...HHSTTEEEEEEEEEEE CS
   PF00736.14 33 ltwgkaskkepiaFGlkkLqvsvvieDdevstdeleeki..lgleeeVqsveivsfnk 88
                 l+w ++ ++ p+aFGlkk+ +++vi+ + +s+de++e+i    l +eVqs+e  s++ 
  MMETSP0890-20130614|11729_1  2 LVWSENCELRPVAFGLKKIALTAVINQT-ISMDEIIEEIteDILPDEVQSMELLSMSL 58
                 79***********************875.**********766788**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 214.22
//
Query:       MMETSP0890-20130614|11727_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   41.3   8.2    1.2e-10   41.3   5.7    2.5  2  PF00505.14 HMG (high mobility group) box
    8.2e-07   29.2   9.3    8.2e-07   29.2   6.4    3.0  4  PF09011.5  Domain of unknown function (DUF1898)
  ------ inclusion threshold ------
       0.49   10.2   1.9        7.1    6.5   0.0    2.7  2  PF12650.2  Domain of unknown function (DUF3784)
       0.55    9.0   1.9       0.58    8.9   1.3    1.2  1  PF02535.17 ZIP Zinc transporter
        3.5    5.6  26.3       0.34    9.0  14.6    1.7  2  PF06375.6  Bovine leukaemia virus receptor (BLVR)
          4    5.2  18.5        6.3    4.5  12.8    1.3  1  PF02724.9  CDC45-like protein
        6.6    5.3   9.5        7.9    5.0   6.6    1.2  1  PF01080.12 Presenilin
        8.9    3.7  11.9        9.5    3.6   8.2    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   5.7   7.1e-14   1.2e-10       7      69 .]      60     122 ..      47     122 .. 0.94
   2 ?   -7.3   4.9         8   1.4e+04      43      59 ..     163     179 ..     160     190 .. 0.54

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 7.1e-14
                  HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
   PF00505.14   7 aFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                   + lf++e r++++++ P+ k +  +++l++kW+++++eeKk Y ++ e++ke+y++e++ Y+
  MMETSP0890-20130614|11727_1  60 GYQLFLREERKNIAEKYPGEKWRYAMSELAKKWNNMTDEEKKVYMDQGERDKERYQREMKVYE 122
                  599********************************************************9995 PP

  == domain 2    score: -7.3 bits;  conditional E-value: 8
                  -HCCHHHHHHHHHHHHH CS
   PF00505.14  43 seeeKkpYeekaekeke 59 
                  +e++Kk+ ++k+ ++ e
  MMETSP0890-20130614|11727_1 163 EEKKKKKKKRKSTEDDE 179
                  44555555555555444 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.1     7e+03      32      44 ..       9      21 ..       3      23 .. 0.75
   2 !   29.2   6.4   4.8e-10   8.2e-07       2      70 .]      45     118 ..      43     118 .. 0.86
   3 ?   -2.8   1.0       4.8   8.3e+03      60      64 ..     167     171 ..     160     177 .. 0.51
   4 ?   -5.7   2.4         8   1.4e+04       4       7 ..     184     187 ..     180     192 .. 0.46

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4.1
    PF09011.5 32 glaevsklcsekW 44
                 ++a + + +s+ W
  MMETSP0890-20130614|11727_1  9 EMAAFCETMSNTW 21
                 6778888888888 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 4.8e-10
    PF09011.5   2 kkpkrkrnA.......YflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydrea 70 
                  kk+kr +nA       Y lF+++ r++ +++ p +  + + ++ ++ +kW ++++eeK+ Y ++   dk+ry+re+
  MMETSP0890-20130614|11727_1  45 KKKKRDPNAppyfitgYQLFLREERKNIAEKYPGE--KWRYAMSELAKKWNNMTDEEKKVYMDQGERDKERYQREM 118
                  5666767765544444888999*********9999..69999*********************************8 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 4.8
    PF09011.5  60 kedkk 64 
                  k++kk
  MMETSP0890-20130614|11727_1 167 KKKKK 171
                  23333 PP

  == domain 4    score: -5.7 bits;  conditional E-value: 8
    PF09011.5   4 pkrk 7  
                  +k+k
  MMETSP0890-20130614|11727_1 184 KKKK 187
                  2222 PP

>> PF12650.2  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0041       7.1      21      40 ..      56      75 ..      54      89 .. 0.89
   2 ?    2.4   0.3     0.079   1.4e+02      26      38 ..      92     104 ..      81     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0041
    PF12650.2 21 fLisGYntmskeekekydek 40
                 ++i+GY  + +ee++++ ek
  MMETSP0890-20130614|11727_1 56 YFITGYQLFLREERKNIAEK 75
                 69**************9988 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.079
    PF12650.2  26 Yntmskeekekyd 38 
                  +n+m+ eek+ y 
  MMETSP0890-20130614|11727_1  92 WNNMTDEEKKVYM 104
                  9********9985 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3   0.00034      0.58     105     167 ..     106     191 ..      26     194 .] 0.57

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00034
   PF02535.17 105 s.......................dahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkes 167
                  +                       ++++ + + ++++++++ ++ +a   + ++++ +e++++++++++ ++d +sk+k++++ ++
  MMETSP0890-20130614|11727_1 106 QgerdkeryqremkvyearlaaqaSNAQEEASSSSESSTDDDEPAQAPPTVAAPQATEEKKKKKKKRKSTEDDEPSKKKKKKKSKK 191
                  05555555555555555565542222222222333333333334444444444677777777777777777777666666665554 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.17   2.9e+02      95     104 ..      40      49 ..      16      54 .. 0.61
   2 ?    9.0  14.6    0.0002      0.34     173     301 ..      63     191 ..      57     194 .] 0.62

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.17
    PF06375.6  95 ekdkrkkkkr 104
                  e++k+kkkkr
  MMETSP0890-20130614|11727_1  40 EQEKKKKKKR 49 
                  2233333333 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0002
    PF06375.6 173 lpvqkhrnaetsksp.ekedvplvekkskkkkkkekkekekerdk.dkkkevekfkdlllalddspaaaasvleedevslavtvlkeaqeeereenkdakaeeskkssktkkkkqrkekeekkkkkkkskk 301
                  l +++ r+  + k p ek    ++++ +kk ++   +ek+   d+ ++ ke+ + ++++++     a a+++ ee   s  ++  ++ + + +     ++a+e kk  k+k+k +  +  +kkkkkkkskk
  MMETSP0890-20130614|11727_1  63 LFLREERKNIAEKYPgEKWR-YAMSELAKKWNNMTDEEKKVYMDQgERDKERYQ-REMKVYEARLAAQASNAQEEASSSSESSTDDDEPAQAPPTVAAPQATEEKKKKKKKRKSTEDDEPSKKKKKKKSKK 191
                  66788999999999966654.556666666666666666655555123333333.5556555555556666666666665555555556666666677777777777777777777777777777777766 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  12.8    0.0037       6.3      90     185 ..      93     190 ..      86     194 .] 0.46

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0037
    PF02724.9  90 eNvfgasdqvivfddgdieeelekeeeerdayealvemkeeee.....eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsness 185
                  +N++ ++++v+ +d+g+ ++e  + ++e + yea+   + ++      ++s+++ d+++ ++ +++ a  +  +e+++++++++++ed+++ ++k++++s+
  MMETSP0890-20130614|11727_1  93 NNMTDEEKKVY-MDQGERDKE--RYQREMKVYEARLAAQASNAqeeasSSSESSTDDDEPAQAPPTVAAPQATEEKKKKKKKRKSTEDDEPSKKKKKKKSK 190
                  57777444444.566666555..333457777777765544441112244444444444444444444444444444444444444444444444443322 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.6    0.0046       7.9     229     289 ..     128     186 ..      90     194 .] 0.61

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0046
   PF01080.12 229 gsnqeetsegeesterrtskstraaispdsvaassstlelkekssteeesddesdssetes 289
                  + +++ ++e+++ ++ +++++ + a  p +vaa + t e+k+k++++++++d+  s++++ 
  MMETSP0890-20130614|11727_1 128 Q-ASNAQEEASS-SSESSTDDDEPAQAPPTVAAPQATEEKKKKKKKRKSTEDDEPSKKKKK 186
                  1.1122223333.334444445666677777777777766666666666666665555443 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.2    0.0055       9.5     597     682 ..      92     187 ..      20     194 .] 0.36

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0055
    PF12722.2 597 kelilsiskelkeksnqkkkk..........eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeq 682
                  ++ +++ +k++ + + +++k+           +   ++sn ++++ss+s++s + ++  + + + + p+++++ ++++++++++e+ + s++++++
  MMETSP0890-20130614|11727_1  92 WNNMTDEEKKVYMDQGERDKEryqremkvyeARLAAQASNAQEEASSSSESSTDDDEPAQAPPTVAAPQATEEKKKKKKKRKSTEDDEPSKKKKKK 187
                  222222233333333333333333333333222222222222222222222222222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2039  (0.149137); expected 273.4 (0.02)
Passed bias filter:                      651  (0.0476156); expected 273.4 (0.02)
Passed Vit filter:                       126  (0.00921592); expected 13.7 (0.001)
Passed Fwd filter:                        43  (0.00314511); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.44s 00:00:01.43 Elapsed: 00:00:00.74
# Mc/sec: 628.23
//
Query:       MMETSP0890-20130614|11730_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-63  211.0   2.3    7.6e-63  211.0   1.6    1.3  2  PF01294.13 Ribosomal protein L13e


Domain annotation for each model (and alignments):
>> PF01294.13  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.0   1.6   5.6e-67   7.6e-63       2     178 ..       7     190 ..       6     191 .. 0.93
   2 ?   -3.9   0.0      0.53   7.3e+03      73      86 ..     193     206 ..     192     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 211.0 bits;  conditional E-value: 5.6e-67
   PF01294.13   2 vilknhfkkkWqe......rvktwfnqparkvrrrkarqkkakkiaPrPaaGalrPvvraptlkynkkvraGrGfsleelkaaGinkkfartiGiavdhrrrnrsleslqanvqrlkeyksklilfPrkakkpkagdseaee..vkkatqlkgpvlPikreakrvelrkvtkeekkfkafaklrl 178
                   i+++hf+kkW +      +vktwf qpa+k +rr  r+ kak+iaPrP++  lrP v +pt +y  k+r GrGf+leelk aGi+++fa+t+Giavdhrr n+ +esl++nv+rlk+yk klilfPrk++k+k+gds+ae      a    g++ P+++ +++ve+  +++e  +f+a+a+lr+
  MMETSP0890-20130614|11730_1   7 EIPHQHFHKKWHQtkrgplKVKTWFHQPAQKKQRRLKRALKAKAIAPRPLQ-RLRPAVMCPTQRYSSKMRLGRGFTLEELKEAGIAPAFAKTVGIAVDHRRVNKCQESLDRNVDRLKAYKEKLILFPRKGNKTKTGDSSAEAraAVDAVVSTGTIAPLSKPQEEVEFMDISDELVDFSAYATLRT 190
                  589********863444446*******************************.9************************************************************************************99886114556677899*****************************96 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.53
   PF01294.13  73 eelkaaGinkkfar 86 
                  +elk  Gi  k+a+
  MMETSP0890-20130614|11730_1 193 NELKLKGIRVKMAK 206
                  58999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 750.62
//
Query:       MMETSP0890-20130614|11726_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-38  129.0   0.9    3.5e-18   65.2   0.1    2.2  2  PF02847.12 MA3 domain


Domain annotation for each model (and alignments):
>> PF02847.12  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.5e-21   2.1e-17       1     113 []     128     240 ..     128     240 .. 0.97
   2 !   65.2   0.1   2.6e-22   3.5e-18       4     109 ..     291     400 ..     288     404 .. 0.90

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.5e-21
   PF02847.12   1 lkrkiflileeylssgdyeeavskleeLklpkqhheivkillecaleekktyneyyalLlsklceknlisskqfekgfsrvlesledleldipeairnlaeflarliaedilp 113
                  +kr    + +e + sgd+ e  +++ e + p++  eivk+ ++ al++k++++e  ++L++  +  +l s ++  kgf+r++e +edl ld+p+a +++a fl r++++++lp
  MMETSP0890-20130614|11726_1 128 FKRRLIQSFDELYTSGDIYETERQISECECPEFAFEIVKRGVSKALDRKAHERELTSKLFAAAIADGLMSWQDAAKGFERLFEAMEDLILDVPKAEDIVADFLIRCVVDEVLP 240
                  57777888999999************************************************************************************************997 PP

  == domain 2    score: 65.2 bits;  conditional E-value: 2.6e-22
   PF02847.12   4 kiflileeylssgdyeeavskleeLklpkqhheivkillecaleekktyneyyalLlsklcekn....lisskqfekgfsrvlesledleldipeairnlaeflarliae 109
                  ++  +l+eyls  d+eea+++++eL+ p++ he+vk++++ al   + + ++++lLl+ l + +    + s+ q + gf+++++ l+dl ld+p+a r+l+ fl r+ a+
  MMETSP0890-20130614|11726_1 291 AVDQLLQEYLSALDLEEAARCVKELEAPQFGHEVVKRAITTALPLAQDKHDAISLLLKALATDDdtspSLSKHQAKLGFNKLFQILPDLILDVPDAKRKLNAFLDRAKAD 400
                  56789****************************************9999999*******997663333678899********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.89
# Mc/sec: 1133.56
//
Query:       MMETSP0890-20130614|11731_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.6   0.0      3e-07   30.6   0.0    1.5  1  PF04055.16 Radical SAM superfamily
  ------ inclusion threshold ------
      0.082   11.6   0.0        0.1   11.2   0.0    1.1  1  PF00496.17 Bacterial extracellular solute-binding proteins, family 5 Middle


Domain annotation for each model (and alignments):
>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.4e-11     3e-07      23     158 ..       4     157 ..       1     163 [. 0.89

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4.4e-11
                  HHHHHHHHHHHHHHHHHHHTCS-CEEEEE---SGGGTTTHHHHHHHHHHCH...................EECCEEEEEE-SSCH.HHHHHHHHHTT-SEEEEEEESSSHH..HHHHCCT..CTS-HHHHHHHHHHHHHHSSETEEEEEEEECTTTCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04055.16  23 grgrsrsveeileevkelkeekgvkevtltGgepllypdfvellerlakla...................lpgirialetngtlpdeeileelaelgvdrvslglesgdee..kvlklmr..rghtfeevlealeklreagikrvvdfivglpgetdee 158
                   + +++s++ei++++k ++e+k  + ++l +ge l   +++ l + ++ ++                    +g+ +al+  +      + ++l ++g +r+ l +es ++e     +l+     h+++ +++++++l  +g+  ++ +++glp +t ++
  MMETSP0890-20130614|11731_1   4 IKRYTMSKDEIVQIAKWAHENK-YGSIMLQSGELLNEQRLNFLCDVIRTIRsetidmdhalgrapqpisgRQGLGVALSVGELP--ITHYRALMNAGAHRYLLRIESSNPElyA--RLHPndELHSWQTRYRCIKTLQHLGFQLGTGVMIGLPTQTTAD 157
                  57899*************8777.*********999999999999999999999*9999999999****9999999999999888..69***********************553..3332236699*****************9*********999876 PP

>> PF00496.17  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.5e-05       0.1     109     176 ..     165     230 ..     133     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
                  CTTSTTT------EEEEEEETTTEEEEEE-TTSTTCCGSCESEEEEEE-.SHHHHHHHHH----SSEE CS
   PF00496.17 109 sktlaekpvgtGPYklksfkpgqkivlerNpdYWgggkpkldriefrvipdadaaaaalqsGeiddva 176
                  +k+ + +++g GPY+ ++ +p +k++le   +  g  k + +  +f+   +   a+a ++ G+i ++a
  MMETSP0890-20130614|11731_1 165 FKKENVDMIGMGPYVYEENTPVGKMWLEEIQNQ-GITKDQYKINVFERT-TRMIALARILMGDINIAA 230
                  5788999*********************98884.336666666666666.666666666667775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.92
# Mc/sec: 830.91
//
Query:       MMETSP0890-20130614|11734_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.7   0.0    3.3e-10   39.8   0.0    1.5  1  PF00533.21 BRCA1 C Terminus (BRCT) domain
     0.0001   21.9   0.0    0.00018   21.1   0.0    1.4  1  PF12738.2  twin BRCT domain
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.028   14.2   0.0    1.2  1  PF00106.20 short chain dehydrogenase
       0.37    8.6   2.2       0.42    8.4   1.5    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   9.7e-14   3.3e-10       6      77 ..      51     122 ..      50     123 .. 0.96

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 9.7e-14
                  TTTCEEEE.SSTTSSHHHHHHHHHHHCT-EEESSGSSSCSEEEEECCBSHCHHHHHHHHTTCEEEETHHHHHH CS
   PF00533.21   6 Feglkfyi.gtfdnfnreeleelikelGGkvstevskktthlvvgepelrtlkylaaialnipivneeWlldc 77 
                  ++g+++++ gtf ++ ree+++l k++G++++ +vs kt+ lvvg+   +  k ++a++++++++++ +l + 
  MMETSP0890-20130614|11734_1  51 LDGKTVVVtGTFGEVGREEVKDLCKRFGARITGSVSGKTDILVVGNH-PGPAKISQAQERGVQLLSINELVAV 122
                  789******************************************99.*******************999876 PP

>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.3e-08   0.00018       3      60 ..      56     115 ..      55     117 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.3e-08
    PF12738.2   3 icvsgysgdd.rkrlqkliralGasiskeltkkvTHLic.kraegeKyekAqkwgipvVs 60 
                  ++v+g  g+  r++++ l++ +Ga i+++++ k+  L++ ++++  K+++Aq++g++  s
  MMETSP0890-20130614|11734_1  56 VVVTGTFGEVgREEVKDLCKRFGARITGSVSGKTDILVVgNHPGPAKISQAQERGVQLLS 115
                  56777777777****************************8899999**********9876 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   8.1e-06     0.028       1      51 [.      54     110 ..      54     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.1e-06
                  -EEEE---------HHHHHHHHH.SSEEEEEEESS.......SHHHHHHHHHHHHH-- CS
   PF00106.20   1 gtvliTGGlgglGlalArwLvee.garhlvlvsrr......edapgaaeliaelealg 51 
                  +tv++TG  g +G++ ++ L+++ gar    vs +       + pg a++ ++ +++g
  MMETSP0890-20130614|11734_1  54 KTVVVTGTFGEVGREEVKDLCKRfGARITGSVSGKtdilvvGNHPGPAKI-SQAQERG 110
                  79*********************999988888877777776666666665.3334455 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.5   0.00012      0.42     134     188 ..     128     182 ..      84     187 .] 0.51

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00012
    PF02724.9 134 esdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslak 188
                  + +++s + d++ ++e+  ++++k+++d+d e   +++ + +++++   ++++ +
  MMETSP0890-20130614|11734_1 128 QAEDESPERDSSHNDETTTKKSKKNNDDDDVERPPKKKAKPPATPETTTKQTRRR 182
                  2222222222222233333333344455555555555555555555554422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       906  (0.0662668); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.55
# Mc/sec: 814.76
//
Query:       MMETSP0890-20130614|11732_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-19   69.6   0.1    3.8e-19   69.0   0.1    1.2  1  PF13621.1 Cupin-like domain
    0.00099   18.3   0.3     0.0018   17.4   0.2    1.3  1  PF08007.7 Cupin superfamily protein


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.1   5.6e-23   3.8e-19       8     231 ..     174     417 ..     166     434 .. 0.75

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 5.6e-23
    PF13621.1   8 yvakrrPviikgalkdwpalqkwkdeylleylkekygdvkvevektpdgvadsf........eenedlkkvkfseekmtfkdfldkleaged...krsee...ylyl...qnsnlaeefpelred.sdlpfapelfgkkpe...avnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvaslee.sgtsvssvdvenpdl..ekfprfkdakalevelepGevLYlPalWfHeVsss 231
                  y   + P+ + ++ +  ++++kw+d+  + +  +++++ k+e ++   +v++          + ++++k+   ++++ tf++ l+k e+ ++   +   +   ++y    ++s+ +++f  + ++ s ++ ++++f k+p+    ++ ++G ++ +   H D   N+ +++ Gr+r +L++p+d++++y  +  + s   +s+vd+ +p+   ++fp+f ++ a+ev  +pG+ LYlP+ ++H++ s 
  MMETSP0890-20130614|11732_1 174 YRDAEVPFQLYNVPEGNEVVRKWSDDTYMRKRLGTKTKYKCEASNPGGEVNHGPnhfmytngRPTKSRKEPPIKHVRLTFDEWLEKNEKAKNlsiE---TpdtRFYFrfsASSPNDAQFGWVFRElSFFQPRSSIFIKEPKgqrGIHCRFGMPGVIAEAHWDGSRNMIAQFYGRRRYILVDPEDSCDMYLLHRTHpS-GRHSQVDWSKPETwdNDFPKFPKMLAHEVIQRPGDFLYLPTYYLHYIISI 417
                  555677888889999999*******66666667778888888766665555555555655432122333344569999999999999998753331...144444443223444444554433334777788899977766556999******************************************99866644.5677999998887779******************************9766 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   2.7e-07    0.0018     130     198 ..     329     416 ..     324     440 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.7e-07
                  SEE-SSEEEEEEEE--EEEEEE-..............-SSTT-SS-EE--TTT--.......--SEEEEE----EEEE----EEEEE- CS
    PF08007.7 130 pHyDdyDVfllQleGrkrWrvyk..............ptvpelelkseeplkildef.....epvedfvLepGDlLYlPrgviHqgva 198
                  +H+D     + Q +Gr+r  + +              p  ++++ + ++p++ +++f        ++++ +pGD LYlP  + H+  +
  MMETSP0890-20130614|11732_1 329 AHWDGSRNMIAQFYGRRRYILVDpedscdmyllhrthPSGRHSQVDWSKPETWDNDFpkfpkMLAHEVIQRPGDFLYLPTYYLHYIIS 416
                  7********************999*********9999666666666666666666666555456789999**************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.72
# Mc/sec: 1577.60
//
Query:       MMETSP0890-20130614|11733_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   11.8   0.5      0.087   11.9   0.3    1.2  1  PF07969.6 Amidohydrolase family


Domain annotation for each model (and alignments):
>> PF07969.6  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   6.3e-06     0.087     119     168 ..      52      96 ..       6      98 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.3e-06
    PF07969.6 119 patladlaemakilraaikelnalGittiqdgagfeagpaellealrala 168
                  ++ + ++a++++ l+aa+ +++a+Gi+++  +a    +++e++++l +l+
  MMETSP0890-20130614|11733_1  52 ME-ALQKAAQNPKLKAAVLDVQANGISAMSKYA----SDPEIMATLNELK 96 
                  44.5999**********************9999....********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 323.83
//
Query:       MMETSP0890-20130614|11736_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-22   79.2  13.4    2.4e-22   79.0   9.3    1.0  1  PF03179.10 Vacuolar (H+)-ATPase G subunit
  ------ inclusion threshold ------
      0.023   14.4   5.3      0.028   14.2   3.7    1.1  1  PF10454.4  Protein of unknown function (DUF2458)
       0.09   11.8   1.4        0.1   11.6   1.0    1.0  1  PF04582.7  Reovirus sigma C capsid protein
       0.14   12.0  13.1       0.17   11.8   8.7    1.4  1  PF05103.8  DivIVA protein
       0.17   11.3   1.7       0.21   11.0   1.2    1.1  1  PF14393.1  Domain of unknown function (DUF4422)
       0.27   11.1   5.9        0.3   11.0   4.1    1.1  1  PF11068.3  Protein of unknown function (DUF2869)
       0.29   10.7   6.2       0.36   10.4   4.3    1.2  1  PF06188.7  HrpE/YscL/FliH and V-type ATPase subunit E
       0.36    9.1   3.2       0.41    8.9   2.2    1.1  1  PF05761.9  5' nucleotidase family
       0.39    8.8   9.9       0.45    8.6   6.9    1.0  1  PF09726.4  Transmembrane protein
       0.46   10.5   8.4       0.54   10.3   0.8    2.1  2  PF11871.3  Domain of unknown function (DUF3391)
       0.57   10.3   6.3        1.1    9.3   4.4    1.5  1  PF13616.1  PPIC-type PPIASE domain
        0.6   10.1   4.5       0.76    9.8   3.1    1.3  1  PF09440.5  eIF3 subunit 6 N terminal domain
       0.69    9.6  18.5        1.3    8.7  12.8    1.5  1  PF00430.13 ATP synthase B/B' CF(0)
       0.73    8.9  16.9        3.6    6.6  11.7    1.8  1  PF12072.3  Domain of unknown function (DUF3552)
          2    8.9  10.4         12    6.4   7.2    1.9  1  PF13145.1  PPIC-type PPIASE domain
        3.1    8.1   9.9        6.8    7.0   0.5    2.1  2  PF05957.8  Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PF03179.10  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   9.3   2.8e-25   2.4e-22       2     105 .]       2     103 ..       1     103 [. 0.94

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 2.8e-25
                  ------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-XXXXXXXXXHHHHHHXXXXXXHHHHHHHHHHHHHHHHHHHHHXXXXXX CS
   PF03179.10   2 qsqgIqqLLqAekeAaeiveeArkrkakrLkqAkeeAekEieeyrakkekefkekeaevsgseeelekkieketeekieelkksvkknkekvvkellklvldvk 105
                  ++qgIq+L+ Ae++A++iv+eAr ++ +r+k+Ak eAe  i++ r++k++ef+   +++  +++++ ++++k+ e++i+++kk +++nk +v ++++k+v+dv+
  MMETSP0890-20130614|11736_1   2 STQGIQELMSAENRASQIVAEARAARGERMKEAKREAETVIAKLRSEKQAEFEASSQAS--QTQDEFAELKKNSEAEIADMKKLYNQNKGAVTNMMVKTVTDVD 103
                  589*************************************************9987776..56777889********************************985 PP

>> PF10454.4  Protein of unknown function (DUF2458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.7   3.2e-05     0.028      27     118 ..       4      95 ..       2     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.2e-05
    PF10454.4  27 rkirklikeqhkhekqwekerealikkqearkekkkkldavLksvgaqvddgsknsrkekeeeaeLeafdekvlkaskqlskemkeklkelk 118
                  + i++l++  ++  +   + r a  ++++  k++ + + a+L+s++++  + s++++++++e aeL++  e  +  +k+l++++k++  ++ 
  MMETSP0890-20130614|11736_1   4 QGIQELMSAENRASQIVAEARAARGERMKEAKREAETVIAKLRSEKQAEFEASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGAVTNMM 95 
                  779999999999999999999999999999999999**********99999999999999************************99988765 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0   0.00012       0.1      52     144 ..      14     108 ..       3     119 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
    PF04582.7  52 ssissklsdlsadlqd.vtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlks.dvsanglnitd 144
                  + +s+ +++  a+ ++ + ++  ++++ + +l++e +a  ++ ++ s +  +++el ++ +a ++++++  + n ++++n+    v+   l+++d
  MMETSP0890-20130614|11736_1  14 NRASQIVAEARAARGErMKEAKREAETVIAKLRSEKQAEFEASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGAVTNMMVkTVTDVDLSLSD 108
                  56667777777666542777888999999*******99999999999999******************************875146666676666 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   8.7    0.0002      0.17      67     126 ..       7      76 ..       2      81 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0002
    PF05103.8  67 kslvvaqetaeevkanakkeaeliikeaekkaekive..........eaeeeakkleteldelkrqsrlf 126
                  + l++a++ a ++ a+a+  + + +kea+++ae++++          ea+++a++ ++e+ elk++s+++
  MMETSP0890-20130614|11736_1   7 QELMSAENRASQIVAEARAARGERMKEAKREAETVIAklrsekqaefEASSQASQTQDEFAELKKNSEAE 76 
                  45677777777777777777777777777777777777777777777*******************9987 PP

>> PF14393.1  Domain of unknown function (DUF4422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   0.00025      0.21      89     173 ..      17      97 ..       7     103 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00025
    PF14393.1  89 keekekekilseeeiekllkkydiilpkkrkyyietlyehYakahlkedldllrevikekypeyleafdkvlkkksaylfNmfim 173
                  ++   ++++++ e+++++ ++++ +++k r+      + +++++ ++++ +   + +k++ +  +++++k+++++++ ++Nm++ 
  MMETSP0890-20130614|11736_1  17 SQIVAEARAARGERMKEAKREAETVIAKLRSE----KQAEFEASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGAVTNMMVK 97 
                  45566777888899999999999999999884....4677888877777777778899999999*******************96 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.1   0.00035       0.3      28     110 ..       8      90 ..       1     111 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00035
    PF11068.3  28 qleqleqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkqllqqleqvqeLelgsevkqgeveslvevkvGD 110
                  +l ++e+  +q+  +++ a  e  k+   + e +  +++ ek+   e   q  q +++  eL+ +se +   + +l++ ++G 
  MMETSP0890-20130614|11736_1   8 ELMSAENRASQIVAEARAARGERMKEAKREAETVIAKLRSEKQAEFEASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGA 90 
                  56677888899999999888887777779999999999999999999999999999999999999999999999999988884 PP

>> PF06188.7  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.3   0.00042      0.36      24      91 ..       8      77 ..       5     103 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00042
    PF06188.7 24 eqlaeslrarelleeArqqAeelleeaeekaeallqsaeeqaeaef..WqqAdalLkelqeqreqleeqv 91
                 e + +++ra+++++eAr+   e ++ea+++ae+++++ + + +aef   +qA +  +e+ e +++ e+++
  MMETSP0890-20130614|11736_1  8 ELMSAENRASQIVAEARAARGERMKEAKREAETVIAKLRSEKQAEFeaSSQASQTQDEFAELKKNSEAEI 77
                 6678899**********9999999*********9987765555555115666666555555555555544 PP

>> PF05761.9  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.2   0.00048      0.41     337     399 ..      32      94 ..       8     102 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00048
    PF05761.9 337 ekekkeelseleelleelekelskkreeeelrqaleelkkeikelreklkelfnkkfGslfrt 399
                  +++k+e+ + + +l+ e ++e+++ ++ ++++ +  elkk+ +    ++k+l+n++ G++   
  MMETSP0890-20130614|11736_1  32 KEAKREAETVIAKLRSEKQAEFEASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGAVTNM 94 
                  33334445667888999999999999*******************************998765 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.9   0.00053      0.45     521     619 ..      12     103 ..       7     111 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00053
    PF09726.4 521 eeetaaravalaaasreekaeslkskkqdleleikkLehelklkeeeiralekkiqelrkyekeseketevLisaLaamqeknetLensLsaetrvkLd 619
                  +e++a + va a a+r   +e +k++k++ e+ i kL+ e +++ e  +++ +  +e+       +k++e  i+ ++ + ++n+    ++   t   +d
  MMETSP0890-20130614|11736_1  12 AENRASQIVAEARAAR---GERMKEAKREAETVIAKLRSEKQAEFEASSQASQTQDEFAE----LKKNSEAEIADMKKLYNQNKGAVTNMMVKTVTDVD 103
                  6788888887777766...56799***************988888888777777767665....47777777777777777766666665555555555 PP

>> PF11871.3  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   2.1     0.038        33      88     125 ..      17      55 ..       2      58 .. 0.73
   2 ?   10.3   0.8   0.00063      0.54      71     116 ..      57      99 ..      47     109 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.038
    PF11871.3  88 vsverelkrak.klyqeakrlvrklfedaragkaidvep 125
                  +++  e + a+ + ++eakr+++ +++++r+ k+ + e+
  MMETSP0890-20130614|11736_1  17 SQIVAEARAARgERMKEAKREAETVIAKLRSEKQAEFEA 55 
                  444555566666899999*********999999988775 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00063
    PF11871.3  71 dsikqlrekakpssk.....akvsverelkrakklyqeakrlvrklfedar 116
                  ++++q+        +      k+  e e++ +kkly++ k +v +++ ++ 
  MMETSP0890-20130614|11736_1  57 SQASQT--------QdefaeLKKNSEAEIADMKKLYNQNKGAVTNMMVKTV 99 
                  111111........1123456788999********************8875 PP

>> PF13616.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.4    0.0013       1.1      13      61 ..      11      60 ..       3     103 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0013
    PF13616.1 13 pdsvkvshIlvdskgkasrtkeeakakAdsilkalk..kgadFaalAkkyS 61
                 + + ++s+I+ +   + +++ +eak++A+ ++++l+  k a+F+a  +  S
  MMETSP0890-20130614|11736_1 11 SAENRASQIVAEARAARGERMKEAKREAETVIAKLRseKQAEFEASSQ-AS 60
                 557899******99999*******************867779987543.23 PP

>> PF09440.5  eIF3 subunit 6 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   0.00089      0.76      58     123 ..      25      91 ..       3     102 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00089
    PF09440.5  58 eneeeipaelaekreevlkelk.eleeevakilklledeevvknlrsdkkanlefLeeehgvtvemv 123
                  +   e ++e+++++e+v+++l  e ++e +   +  +++++ ++l+++++a ++ +++ ++ +   v
  MMETSP0890-20130614|11736_1  25 AARGERMKEAKREAETVIAKLRsEKQAEFEASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGAV 91 
                  3456778888999999998875256667788888999999999999999988888887776555444 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  12.8    0.0015       1.3      37     109 ..       7      82 ..       3     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
   PF00430.13  37 nkikeaeerlke.aaellaeaeqqleqArkeaseiienakkeaqklke..eilaeaekdierllesakaeiekeke 109
                  +++ +ae+r+++ +ae+ a+  +++++A+ ea+ +i + ++e+q  +e  +++++++ +   l+++++aei  +k+
  MMETSP0890-20130614|11736_1   7 QELMSAENRASQiVAEARAARGERMKEAKREAETVIAKLRSEKQAEFEasSQASQTQDEFAELKKNSEAEIADMKK 82 
                  567788888888458888899999************99877777766522688999999************98875 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.7    0.0042       3.6      27      85 ..       7      65 ..       2      92 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0042
    PF12072.3 27 kkiseAeeeAkkiieeAkkeAeakkkealleakeeihklreelEkelkerrkelqrqEk 85
                 +++ +Ae++A++i++eA+    +  kea  ea   i klr+e  +e++   +  q q++
  MMETSP0890-20130614|11736_1  7 QELMSAENRASQIVAEARAARGERMKEAKREAETVIAKLRSEKQAEFEASSQASQTQDE 65
                 67899************777777777777777777777777777777766666666554 PP

>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.2     0.013        12      25      85 ..      16      72 ..       6     109 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.013
    PF13145.1 25 leiafvkeevaaeaalaaakakagedfaalakgnsedakdlgisesesdlpeelaealfal 85
                  +++++ +++a+ +++++ak++a+  +a+l++++  ++++ +++++++   +e+a +l++ 
  MMETSP0890-20130614|11736_1 16 ASQIVAEARAARGERMKEAKREAETVIAKLRSEKQAEFEASSQASQTQ---DEFA-ELKKN 72
                 4677888999999**********9999999999877777666554443...4442.22222 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.8     0.043        37       6      45 ..       8      47 ..       3      55 .. 0.49
   2 ?    7.0   0.5    0.0079       6.8      18      62 ..      55      99 ..      48     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.043
    PF05957.8  6 eletlladleellksaadeageeaeelReraeealerare 45
                 el ++ + + +++ +a +  ge+++e++++ae  + ++r+
  MMETSP0890-20130614|11736_1  8 ELMSAENRASQIVAEARAARGERMKEAKREAETVIAKLRS 47
                 3444444444444444444455555555555444444444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0079
    PF05957.8 18 lksaadeageeaeelReraeealerarerlrdaedavrerakeaa 62
                 ++s+a+++++e +el+++ e+++ ++++  ++ + av + + + +
  MMETSP0890-20130614|11736_1 55 ASSQASQTQDEFAELKKNSEAEIADMKKLYNQNKGAVTNMMVKTV 99
                 5788999********************999998888877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2036  (0.148917); expected 273.4 (0.02)
Passed bias filter:                     1012  (0.0740199); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.52s 00:00:01.06 Elapsed: 00:00:00.68
# Mc/sec: 426.41
//
Query:       MMETSP0890-20130614|11735_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-19   69.2  13.7    4.5e-10   39.7   0.4    3.5  3  PF08238.7  Sel1 repeat
    3.3e-05   23.5   0.0    5.9e-05   22.7   0.0    1.4  1  PF13180.1  PDZ domain
     0.0017   18.4   0.0      0.003   17.5   0.0    1.4  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.3   1.1e-05     0.052       2      38 ..     118     152 ..     117     153 .. 0.91
   2 !   39.7   0.4     1e-13   4.5e-10       2      39 .]     155     190 ..     154     190 .. 0.95
   3 !   22.8   0.2   2.1e-08   9.4e-05       1      39 []     191     226 ..     191     226 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
    PF08238.7   2 eAqynLGlyymylnGlgGvpk.dpekAleWyekAAeqG 38 
                  +A+yn  + +   nGl G  k d + Al +++k+A++G
  MMETSP0890-20130614|11735_1 118 KAAYNASMLR--ANGL-GARKeDVAAALLYLRKSAQLG 152
                  599****888..***9.78888**************99 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1e-13
    PF08238.7   2 eAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                  +Aq +L+  ++y nG+gGv+kd ++A++W+  AA++G+
  MMETSP0890-20130614|11735_1 155 RAQLQLA--RLYANGRGGVKKDIDEAFRWFSAAADAGD 190
                  7******..888************************97 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 2.1e-08
    PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                  aeA y LG  ++y+ Gl G++ d+ +Al  + ++A++Gh
  MMETSP0890-20130614|11735_1 191 AEALYHLG--HAYQFGL-GTDCDLHQALFCFFRSAKLGH 226
                  79******..999***9.9*999***************9 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.3e-08   5.9e-05       2      71 ..      16      91 ..      15     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.3e-08
    PF13180.1  2 diGvsvsqlen...trgvlvvs.VkessPaakaglkpGDiilkvdgkkv..ksltdlkslll.kkkpGdtvkltvlR 71
                  +Gv++   +n   ++ v+vv+ V es P +++ +k+GDi+++++ ++v   + t++  l++  +  ++ v+l + R
  MMETSP0890-20130614|11735_1 16 RLGVKLILAKNpknAKYVVVVEaVLESCPHKDS-IKIGDILCQINKEDVhcVDETSFSALIArLTHRDEAVELSFFR 91
                 578887777777767778888889999998887.***************666889999***999999******9999 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.7e-07     0.003       7      58 ..      12      64 ..       6      79 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.7e-07
                 TTTSH---EEEESSTTS.SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGT CS
   PF00595.19  7 ekrgglGfslkggsdkr.dkgifvsevvpggaaeagglkeGDkIlsvNgvdve 58
                 e++g+lG++l   ++ + +k ++v e v  + ++++++k+GD++ ++N +dv 
  MMETSP0890-20130614|11735_1 12 ERQGRLGVKLILAKNPKnAKYVVVVEAVLESCPHKDSIKIGDILCQINKEDVH 64
                 4799999998765555576677776666666666666************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.76
# Mc/sec: 1154.04
//
Query:       MMETSP0890-20130614|11737_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-47  161.1   0.0      4e-47  160.4   0.0    1.3  1  PF00069.20 Protein kinase domain
    3.3e-26   91.8   0.0    7.3e-26   90.7   0.0    1.5  1  PF07714.12 Protein tyrosine kinase
     0.0056   15.4   0.6     0.0093   14.6   0.3    1.3  1  PF05445.6  Poxvirus serine/threonine protein kinase
  ------ inclusion threshold ------
      0.019   14.1   1.4       0.11   11.7   1.0    2.2  1  PF01163.17 RIO1 family
       0.12   12.0   0.0       0.12   12.0   0.0    2.2  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   1.5e-50     4e-47       1     260 []     235     561 ..     235     561 .. 0.90

  Alignments for each domain:
  == domain 1    score: 160.4 bits;  conditional E-value: 1.5e-50
                  EEEEEEEE----EEEEEEEETTCCE.EEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-T.....TB--EEEEEEESTEEEEEEE--SC-EHHHHHH...HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH...............................................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgk.kvAvKilkkeeekskkektavrElkilkkl.sHp.....nivkllevfeekdelylvleyveggdlfdllk...kegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks...............................................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  y++l ++G+G f++V+ka+  ++++  vAvK+++++e   k++ +   E++il++l +H+     + v+ll++fe++ ++ lv+e++ + +l d+l+   k+  ++ ++++ +a+q++ +l++l + +iiH D+Kp+NiL++ ++ ++k++DFG+a    ++ ++   + ++r Y+APE++l +  y+++vD+Ws++  l+e++tg+++f+g++++d+l+++++ +++   ++++ +  +s                                                                +l dl++ +l  +p++R+++ ++ kh+++
  MMETSP0890-20130614|11737_1 235 YRVLGTVGRGVFSSVLKAVILNENDkSVAVKMIRNNEIMTKAAMK---EIQILRMLaEHDpqekfHCVRLLSTFEHRAHTALVFEHFAM-NLRDALNkygKHVGINIRSVRVYAKQLFLALRHLEKCAIIHADIKPDNILVSeNNAHIKLCDFGSAFF-VNDPSDPAPYLVSRFYRAPEIIL-GLRYDRRVDLWSVATCLFEIYTGQVMFPGTDNNDMLRHMQHCKGRFPVKMIRAHL-RSyttlllrdphfvqldgtfkfqrrlfdkrtgearltfvdilapihsvkdilletkagadqieavLDLADLLDATLSLNPDNRPQVIDCSKHRFI 561
                  68899**********999876666548*********999988766...********88873333358********************99.999999977677778*************************************778899********75.9999999****************.******************************7777777777776654444444333.3369*************************************************************9************************99986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   2.7e-29   7.3e-26       6     220 ..     240     452 ..     236     468 .. 0.88

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 2.7e-29
                  EE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BT.....TB--BEEEBESSSSEEEEEE---B--HHHHHHHT.GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHT CS
   PF07714.12   6 klGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkkl.khp.....nivkllgvctkeepllivteyvkgGdLlefLrkk.ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellke 220
                  ++G+G f++V+++++    ++++ +VavK++++++    +++ ++e++i++ l +h+     + v+ll  + ++ ++ +v+e+ +  +L++ L+k  ++  ++++ +  +a q+  ++++Le+  ++H d+   N+L++e++ ++k++DfG a  +   ++ ++     ++  + apE++   ++  + D Ws  ++l+Ei+t g+  +pg +n+++l+++++
  MMETSP0890-20130614|11737_1 240 TVGRGVFSSVLKAVIL---NENDKSVAVKMIRNNEIM--TKAAMKEIQILRMLaEHDpqekfHCVRLLSTFEHRAHTALVFEHFAM-NLRDALNKYgKHVGINIRSVRVYAKQLFLALRHLEKCAIIHADIKPDNILVSENNaHIKLCDFGSAFFV---NDPSDPAPYLVSRFYRAPEIILGLRYDRRVDLWSVATCLFEIYT-GQVMFPGTDNNDMLRHMQH 452
                  79**************...88999*******665544..5899*********99887666668999999999***********987.799999998334568889999*******************************9888********99999...3334455667888899****************************.99***********999865 PP

>> PF05445.6  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   3.4e-06    0.0093     288     321 ..     348     380 ..     317     392 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.4e-06
    PF05445.6 288 yikiyelkdctnFlHvDlkPdniLvFdskeelvi 321
                  ++ + +l++c   +H+D+kPdniLv +++ ++ +
  MMETSP0890-20130614|11737_1 348 FLALRHLEKCA-IIHADIKPDNILVSENNAHIKL 380
                  33444555554.69***********999988865 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   4.1e-05      0.11      47     149 ..     269     384 ..     241     394 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
                  HHHHHHHHHHHHHHHHHHCHH--....--S--EEEEETT....EEEEE---.-TTCEGGCTTTS-......-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS..SEEE---T CS
   PF01163.17  47 prklvklwaekEfrnLkrleeag....vrvPkpialkrn....vlvmefig.edgvaapklkdvel.....eeaeelyeeileemrklykeaglvHaDLSeyNvlvded..kvviIDvs 149
                  +++++  +a kE+++L+ l+e++    +++ + +   ++    +lv e    +   a+ k               ++y++ l    + ++++ ++HaD+   N+lv+e+  ++ + D++
  MMETSP0890-20130614|11737_1 269 NNEIMTKAAMKEIQILRMLAEHDpqekFHCVRLLSTFEHrahtALVFEHFAmNLRDALNKY---GKhvginIRSVRVYAKQLFLALRHLEKCAIIHADIKPDNILVSENnaHIKLCDFG 384
                  5566677777777777777765433334444433333331113556555552222222222...11333354455678888888889999*****************995556667776 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.7       1.4   3.9e+03     128     161 ..      34      71 ..      18      90 .. 0.55
   2 ?   12.0   0.0   4.3e-05      0.12     156     195 ..     348     386 ..     288     390 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHCTHH....HHHHHHHHHHHHHHHHHH CS
   PF01636.18 128 llesataalvaselle....lleeleervlaalaallp 161
                  + ++++++++ s+l      + +++++++la+l    +
  MMETSP0890-20130614|11737_1  34 YDHRKKRRRDESDLRLeaddDEIKIDQEALAELMNDED 71 
                  44444444444443333334456666666666554444 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 4.3e-05
                  HHHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 156 laallpgaeppvllHgDlhpgNllvdpddgrvgviDfeda 195
                  ++al++  e+ +++H D++p+N+lv +++ ++ + Df+ a
  MMETSP0890-20130614|11737_1 348 FLALRH-LEKCAIIHADIKPDNILVSENNAHIKLCDFGSA 386
                  444444.478899*************77777788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       759  (0.0555149); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.43s 00:00:01.46 Elapsed: 00:00:00.92
# Mc/sec: 1630.56
//
Query:       MMETSP0890-20130614|11740_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-32  112.0  17.7    2.5e-32  111.5  12.3    1.2  1  PF03357.16 Snf7
  ------ inclusion threshold ------
      0.013   14.8   2.3      0.015   14.5   1.4    1.3  1  PF07167.8  Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus
       0.14   12.5   4.7       0.17   12.2   0.4    2.8  3  PF11829.3  Protein of unknown function (DUF3349)
       0.25    9.8   7.0      0.018   13.6   0.8    1.8  2  PF11917.3  Protein of unknown function (DUF3435)
        1.6    8.4   8.2        1.2    8.7   4.5    1.6  1  PF12878.2  SICA extracellular beta domain


Domain annotation for each model (and alignments):
>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5  12.3     9e-36   2.5e-32       1     169 [.      22     191 ..      22     193 .. 0.98

  Alignments for each domain:
  == domain 1    score: 111.5 bits;  conditional E-value: 9e-36
   PF03357.16   1 eailsLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqgakamkamnkkmdidkidklmdeiedqmekadeisealsrsldda.deedEeeldaeLdaLeqelgdeelesvelpsvPse 169
                  +++++L+k++r++++++++++  +kk eae++klak+g+ d++++++k+++r++  ++++++ +a+++++++++ ++ s  + +++mk + ++m amnk +++++++k+m e++++m+ a+ i++++++++++   +e Eee ++ ++ + +e++ +  +++++ +vP++
  MMETSP0890-20130614|11740_1  22 KWKRDLNKEMRSMDREIRNIQAAEKKSEAECQKLAKQGRIDACKIIAKEIYRTRATINRMYQNKAQMNSISMQLTTQASLVRAAGSMKRSSDVMAAMNKLVNVPQLQKTMIEMQREMQRAGLIDDMVNDAMESLdGDEIEEESENQINSIVAEITGDIFNEKDVNNVPTS 191
                  5899********************************************************************************************************************************************************************85 PP

>> PF07167.8  Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.4   5.6e-06     0.015      37     141 ..      92     197 ..      56     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.6e-06
    PF07167.8  37 evegldektrerveflvrqlvdalaPsNflltNpevlkealeseGeslvkGl.enlleDleegkgkisqtdesafevGknlattpGkvvfrnelleliqYkpttek 141
                  +++ + +++  r++  +++  d++a  N l+  p+++k+++e + e   +Gl + +++D +e+ +  +  +es+ ++ + +a   G++  ++++ ++    p++e+
  MMETSP0890-20130614|11740_1  92 SMQLTTQASLVRAAGSMKRSSDVMAAMNKLVNVPQLQKTMIEMQREMQRAGLiDDMVNDAMESLDGDEIEEESENQINSIVAEITGDIFNEKDVNNVPTSIPQSEQ 197
                  233356677788889999*********************************7478*******9999999999999****************999988777777776 PP

>> PF11829.3  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.39   1.1e+03      57      85 ..      67      95 ..      31     122 .. 0.57
   2 ?   12.2   0.4   6.3e-05      0.17      35      85 ..     141     192 ..     137     207 .. 0.87
   3 ?    0.0   0.0      0.39   1.1e+03      67      87 ..     201     221 ..     194     222 .] 0.83

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.39
                 -HHHHHHHHHHHHSS---HHHHHHHHHHH CS
    PF11829.3 57 daadiavlitevtdeepspedverVaarL 85
                  a++i +  + + +   ++++++ ++ +L
  MMETSP0890-20130614|11740_1 67 IAKEIYRTRATINRMYQNKAQMNSISMQL 95
                 33333333333333333444444444444 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6.3e-05
                  -.--HHHHHHHHHHHHH-----B-HHHHHHHHHHHHSS---HHHHHHHHHHH CS
    PF11829.3  35 r.LtddevkevaaellergesatdaadiavlitevtdeepspedverVaarL 85 
                    L dd v++ +++l  ++ +++++ +i+++++e+t +  +++dv+ V + +
  MMETSP0890-20130614|11740_1 141 AgLIDDMVNDAMESLDGDEIEEESENQINSIVAEITGDIFNEKDVNNVPTSI 192
                  34899**********99998888************************98876 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.39
                  HHHSS---HHHHHHHHHHHHT CS
    PF11829.3  67 evtdeepspedverVaarLaa 87 
                   v++e+ +++d+++++arL a
  MMETSP0890-20130614|11740_1 201 VVAEENKEADDLDAMKARLHA 221
                  57888899999****999975 PP

>> PF11917.3  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.16   4.5e+02     291     321 ..      18      48 ..       5      79 .. 0.53
   2 ?   13.6   0.8   6.7e-06     0.018     234     303 ..      81     151 ..      73     184 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.16
    PF11917.3 291 qelkrkreelkkeleakygqvakakgtelye 321
                  + l++ +++l+ke++++ +++++ +++e+++
  MMETSP0890-20130614|11740_1  18 EDLRKWKRDLNKEMRSMDREIRNIQAAEKKS 48 
                  3344444444444444333333333333222 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.7e-06
    PF11917.3 234 hYlsrkvdkdvqavvlglppqealiraatsmsrsiDprrPk.eL...tdeqkasveedpelqelkrkreelkke 303
                   Y   + ++ ++++ ++l +q +l+raa+sm rs D  +   +L    + qk  +e + e+q++    ++ ++ 
  MMETSP0890-20130614|11740_1  81 MY---QNKAQMNSISMQLTTQASLVRAAGSMKRSSDVMAAMnKLvnvPQLQKTMIEMQREMQRAGLIDDMVNDA 151
                  56...3367899************************88764133111345666677666666665555555555 PP

>> PF12878.2  SICA extracellular beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.5   0.00045       1.2      26     120 ..      21     112 ..       4     141 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00045
    PF12878.2  26 efwee.vkkelkkllkelseakkkkkkvekeCnklddenetsaekkaCnllaagLkklyeekngskkkkkkknksfkqtmgCllLkayAkklkeka 120
                  + w++  +ke++++ +e+++ +  +kk e eC+kl    +++    aC+ +a+ + +  ++ n   ++k + n    q    + L   A  +k ++
  MMETSP0890-20130614|11740_1  21 RKWKRdLNKEMRSMDREIRNIQAAEKKSEAECQKL----AKQGRIDACKIIAKEIYRTRATINRMYQNKAQMNSISMQLTTQASLVRAAGSMKRSS 112
                  4576669****************9998888***98....5677889******99888877766664555555666666666666667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1358  (0.0993271); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.98
# Mc/sec: 542.85
//
Query:       MMETSP0890-20130614|11741_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.99
# Mc/sec: 537.36
//
Query:       MMETSP0890-20130614|11742_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 822.08
//
Query:       MMETSP0890-20130614|11744_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 505.18
//
Query:       MMETSP0890-20130614|11745_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0085   16.1   0.1      0.015   15.3   0.0    1.4  1  PF00536.25 SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.031   14.0   0.1    1.4  1  PF07647.12 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-06     0.015       6      57 ..     255     306 ..     251     310 .] 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.2e-06
                  SSHHHHHHHTT-GGGHHHH.HCT--SHHHHTT--HHHHHHH-------HHHHH CS
   PF00536.25   6 edVgeWLesiglgqYvdnF.rageidgdallllteedLeklgvtllGHrkkIl 57 
                  + ++ WL   glg++ +   + g + +  l+llt+ed+ +lg t    rkk+ 
  MMETSP0890-20130614|11745_1 255 QPLQAWLINHGLGRHWEAIcNLGAKRISDLALLTKEDMDELGFTT-EERKKLN 306
                  66789*************************************999.8888875 PP

>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.5e-06     0.031       7      61 ..     255     308 ..     252     310 .] 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.5e-06
                  HHHHHHHHHT--CCSHHHHHHHTS-SCTCCCSSCHHHHHCCCHHCHHHHHHHHHH CS
   PF07647.12   7 edvaeWLrsiglkqYtenFrdqgitggelllrlteedLkrlGitsvghrkkilkk 61 
                  + ++ WL ++gl+++ e+  + g   ++ l+ lt ed+ +lG   + +rkk+  +
  MMETSP0890-20130614|11745_1 255 QPLQAWLINHGLGRHWEAICNLGAKRISDLALLTKEDMDELGF-TTEERKKLNIQ 308
                  67899**************************************.66667988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.67
# Mc/sec: 1108.76
//
Query:       MMETSP0890-20130614|11747_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-48  163.9   4.8    2.1e-44  149.9   1.6    2.4  3  PF00134.18 Cyclin, N-terminal domain
    4.1e-29  100.7   0.5    1.3e-28   99.1   0.1    1.9  2  PF02984.14 Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   1.6   3.1e-48   2.1e-44       1     127 []      57     184 ..      57     184 .. 0.97
   2 !   13.6   0.0   4.6e-06     0.032      37     102 ..     191     258 ..     186     265 .. 0.80
   3 ?   -2.6   0.0      0.49   3.3e+03      78      86 ..     269     277 ..     265     288 .. 0.83

  Alignments for each domain:
  == domain 1    score: 149.9 bits;  conditional E-value: 3.1e-48
                  CHHHHHHHHHCCT.T-SSTTTCGCSS--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHCCC-SS---CHHHHCHTTSSS-CCHHHHHHHHHHHHCTT--- CS
   PF00134.18   1 diltnllekeekk.kppskyldqqeelnpemrsilidwlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaKveeirppeledlvyitdgaytkeeilqmErliLstLnfdls 127
                  d++++++ kee + +  + y+ qqe++n++mr+ilidwlvev+ kfkl petlyl+vn++dR+ls+  v+r++lqlvgv++LllA+K+eei+ppel+dlvyitd+ayt+e+il mE+ ++++L+++++
  MMETSP0890-20130614|11747_1  57 DMYAHFRVKEEGRlQTLPTYMVQQENINEKMRAILIDWLVEVHLKFKLVPETLYLTVNVIDRYLSVALVERSNLQLVGVSALLLASKYEEIYPPELKDLVYITDKAYTQEQILVMEEMMVKALQYNMT 184
                  688999999999988999************************************************************************************************************95 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.6e-06
                  HHHHHHHCTT--CCCHHHHHHHHHHHHCC-.--CCCCTT---HHHHHHHC..CC-SS---CHHHHCHT CS
   PF00134.18  37 wlvevsekfklspetlylavnyldRflskrsvkrkklqlvgvtcLllAaK..veeirppeledlvyit 102
                  +l++  +  + ++ ++ la    +R+l++  + ++k  l++++++++A K   ++ + p+l +++ ++
  MMETSP0890-20130614|11747_1 191 FLMRYLKAGHADRRMVWLASYSAERMLQEYDMLQHKPSLIAASAVYIARKnlGRNPWSPTLVHYTQYE 258
                  77777778888899999*********************************444555666666666554 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.49
                  -HHHHHHHC CS
   PF00134.18  78 vtcLllAaK 86 
                  ++c+llA++
  MMETSP0890-20130614|11747_1 269 MACVLLASR 277
                  58*****97 PP

>> PF02984.14  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.18   1.2e+03      48      91 ..     136     181 ..     132     187 .. 0.65
   2 !   99.1   0.1     2e-32   1.3e-28       3     115 ..     188     298 ..     186     300 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.18
                  HHHHHCCHHH.....S.HHHHHH-..---CCCCHHHHHHHHHHHHH CS
   PF02984.14  48 aavllarktlkkkeswtetlkhlt..gyskddlkecvelllellsr 91 
                  +a+lla k  +  ++  + l ++t   y+++++    e+++++l++
  MMETSP0890-20130614|11747_1 136 SALLLASKYEEIYPPELKDLVYITdkAYTQEQILVMEEMMVKALQY 181
                  5666666663333344455777776556888888888888888764 PP

  == domain 2    score: 99.1 bits;  conditional E-value: 2e-32
                  HHHHHHHHHHHSSS.HHHHCHHHHHHHHHHHSHHHCCS-HHHHHHHHHHHCCHHH.....S.HHHHHH----CCCCHHHHHHHHHHHHHGGGSS--HHHHHTTCGGGGGBTTS CS
   PF02984.14   3 plsFlrrfskaadadsevrtlakyllelslldykflsyppSliAaaavllarktlkkkeswtetlkhltgyskddlkecvelllellsraansklqavrkKyssskfssvskl 115
                   ++Fl r++ka++ad ++  la+y +e +l +y++l+ +pSliAa+av++ark l++ ++w++tl h+t+y+  dl++c e ++ +l  a+  +lqav+kKyss+k++++++ 
  MMETSP0890-20130614|11747_1 188 IHCFLMRYLKAGHADRRMVWLASYSAERMLQEYDMLQHKPSLIAASAVYIARKNLGR-NPWSPTLVHYTQYEARDLRPCLEDMACVLL-ASRGNLQAVKKKYSSEKYGNIAET 298
                  579****************************************************86.7*************************8887.55599***************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 1278.06
//
Query:       MMETSP0890-20130614|11743_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.5e-107  358.3   8.0   1.5e-105  353.2   1.9    3.5  2  PF00012.15 Hsp70 protein
      8e-06   24.5   0.0      5e-05   21.9   0.0    2.0  2  PF06723.8  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.2   1.9  2.2e-109  1.5e-105       1     591 [.       3     733 ..       3     744 .. 0.85
   2 ?   -0.2   0.6     0.022   1.5e+02     516     575 ..     738     800 ..     733     833 .. 0.76

  Alignments for each domain:
  == domain 1    score: 353.2 bits;  conditional E-value: 2.2e-109
                  EEXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXXSEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXS.SEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS....XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX........XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHH....HCTX.....XCCCESEEEEEXXETTSHHHHHHHHHHTX..XX.......EEXSSXTTTTTTXXXTTCHHHCSSSSXXXXXXECEEESS-E-EEEEE--E................EEEESTTCESSEEEE.EEEEESCCCES.SEEEEEEES..-GSSGGGS..EEEEEEEEE...--.-S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT----HHHHHH..................................................................................HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.GGGSSHHHH...HHHHHHHHHHHHHHT.----HHHHHHHHHHHHH CS
   PF00012.15   1 viGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlp.ykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgek...vtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd.......kernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalk....dakl.....kkeeidevvlvGGstRiPkvqelvkelfg..ke.......psksvnpDeavAiGaAvqaavlsgeeevkdllllDvtpLslgietlggvm................tkliernttiptkks.qvfstaadnqt.aveievlqg..erelakdn..kllgkfelt...gi.ppaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseglsedeiek..................................................................................mvkeaeesaeedkkkkeaieakneleelvyslekkleee.kekvseaek...ekkveeaieelkeel.egedkeeieakleelek 591
                  v+GiD Gt n++++ +e g+v+++ ne+++r    +v+F+ ++r +GeaA     tn kntv  +kr+iGrk+ +pev kei+++p +k+v  ++g ++vev++++  +++t ++ +am+L kl ++  ++  ++   + d+v++vPa+F+ +qR a++dA  iAG+ +lR++n++ta al YG+ ++        k + vl++DlG ++++vS+++   G++ vkat +D  lGG+dfD ++++++++ef kk++id   ++k   +L +a+ekaKk+LS +   e+n+ +e+l e ++d+ +k+t ++feeLv++ll+r + p+e+al+    ++k+     + +++++v+++GG tR+  v+ ++ e +g  +        +++++n+De  A+G+A+ aa+ls+ ++vk+ ++ D +p s+ ++     m                t++ +  t +  +++ ++   +++ +t  + i++ ++  e +l++    +++g+f l+    i +  p+   +i+V ++   +G ++v++++ +   ee+ + +++   s+d+++                                                                                    ++ + ++a++d+   e+ +++n+le+++y++++++ ++ + +++e++k    k++++a+ +l+e    +  k+++++ l++l +
  MMETSP0890-20130614|11743_1   3 VVGIDFGTMNAIMGQAERGGVKILLNENSKRLNANMVSFQGNQRFLGEAAAAISRTNYKNTVKCFKRFIGRKWGEPEVMKEIENIPgLKFVPLPDGFVGVEVAYEDSVQTLTIQQCAAMMLCKLSQICASQEHNNglaMADIVVSVPAWFTHTQRVAMQDACSIAGIRCLRLMNDTTATALEYGIWRSAqklfdnsKISRVLFIDLGYSSYQVSVVDYVTGKLMVKATTYDRCLGGRDFDMEIAKYVAAEFYKKHKIDPMASPKSKMKLLDACEKAKKTLSPHGVLEANFYVECLAE-DIDFGMKITLDQFEELVSPLLDRLVPPIEEALRitstNSKItpdtpSPHDLSAVEIIGGGTRVASVKRKIAETLGiaQGasppnwgLQTTLNADESTAKGCALAAAMLSPRFKVKEYAVVDAVPHSVVLSWDKPQMsisnavpeddeedkddTSNNDSATLFIRNEAtPMLRRITFRRTdVFAIRANYAveESSLLPPGddRAIGTFVLNipeAIgKDSPEKIRKIRVHVNHTLSGTVKVESAEVALLPEETAPESEAA-DSKDAMDTtpiapdseqaqdnaandskeptaasetspdkdtemkdappalskesgeadaasskkkpkykrkpitvettiigkmdqraldaAIETEARMANADRVITETNDMRNDLEAFIYRMRDAILDDlAPFIPESDKsslDKSLQDAEMWLYEGDgFDTTKSAYQNYLQTLGS 733
                  79***********************************************************************************978*************************************985444433334499*********************************************998889999888899*************************************************************************************************.********************************833223344222223579***********************9864323333333579***********************************77655443322211111111111111101122222333333334888999999*977899998874344555544569*****997222222346888999******************9977666555444433.4555555567888****************************************************************************99999999***************************998888********9888888889999998863134447777777766655 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.022
                  HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHH...HHHHHHHHHHHHHHT- CS
   PF00012.15 516 aeesaeedkkkkeaieakneleelvyslekkleeekekvseaek...ekkveeaieelkeele 575
                  ae+ ++ed+ + e + + ++  e +++  ++++e+  +++++ek   +++ e++ ++l + l+
  MMETSP0890-20130614|11743_1 738 AEARKKEDNMRPELVASFQKKIEQFKQWANSIDENYAHIPDTEKtkvRDAAETQSSWLLDMLD 800
                  78889999999999999999999999999******9999999996666666677777766653 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.041   2.8e+02       4      27 ..       4      30 ..       1      56 [. 0.81
   2 !   21.9   0.0   7.3e-09     5e-05      78     299 ..     126     375 ..     114     383 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.041
                 E--B----EEEE------...--EEEE CS
    PF06723.8  4 lgiDLGtantlvyvkgkg...ivlnep 27
                 +giD Gt n ++ + ++g   i+lne 
  MMETSP0890-20130614|11743_1  4 VGIDFGTMNAIMGQAERGgvkILLNEN 30
                 89*********9888887333556665 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 7.3e-09
                  HHHHHHHH-----SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH-----........-TTS----EEEE-----EEEEEE--..--.EEEEEEES..----HHHHHHHHHHHHHH..SB----HHHHHHHHH----S--HHHH.......-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-..HHHHHHHHH....---EEE---------HHHHHHH--- CS
    PF06723.8  78 lkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGagl........pveepsgnmvvdiGggttevavisl..gg.ivtsksvr..vaGdeldeaiikyirkky..nlliGertaekikieigsavkeeeee.......kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektp..peLaadivd....rgivltGGgallkgldkllseetgl 299
                  l ++    ++++ l+ + +v++vP   t+ +r A+++a++ aG r   l++++ a A+  g+        + ++ s  + +d+G  + +v+v+ +  g  +v++++    ++G ++d +i ky+  ++  +  i    + k k+++  a+++++++       + + +  +l++ +   ++++ ++ +e ++  + ++v  ++e+L+ t+    ++ d        ++ + GGg+ +  +++ + e++g+
  MMETSP0890-20130614|11743_1 126 LSQICASQEHNNGLAMADIVVSVPAWFTHTQRVAMQDACSIAGIRCLRLMNDTTATALEYGIwrsaqklfDNSKISRVLFIDLGYSSYQVSVVDYvtGKlMVKATTYDrcLGGRDFDMEIAKYVAAEFykKHKIDPMASPKSKMKLLDACEKAKKTlsphgvlEANFYVECLAEDIDFGMKITLDQFEELVSPLLDRLVPPIEEALRITStnSKITPDTPSphdlSAVEIIGGGTRVASVKRKIAETLGI 375
                  4455566666788999******************************************9887443332223445566799************9752244255555442348*************999844567999999999999988888877766665555555666677777777778888888888888888888888888864431133444443211126788888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.25u 0.53s 00:00:01.78 Elapsed: 00:00:01.00
# Mc/sec: 2156.72
//
Query:       MMETSP0890-20130614|11746_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   72.5   6.2    1.3e-20   72.5   4.3    1.9  2  PF09280.6  XPC-binding domain
    5.2e-14   51.1   0.4    9.5e-14   50.3   0.3    1.5  1  PF00240.18 Ubiquitin family
    1.8e-12   46.5   6.0    8.1e-06   25.3   0.4    2.9  2  PF00627.26 UBA/TS-N domain
     0.0013   18.7   0.0     0.0064   16.5   0.0    2.0  2  PF10302.4  DUF2407 ubiquitin-like domain
     0.0064   16.1   0.1      0.012   15.2   0.1    1.4  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.015   14.9   1.4       0.29   10.7   0.1    2.4  2  PF09838.4  Uncharacterized protein conserved in bacteria (DUF2065)
      0.021   14.3   0.9      0.038   13.5   0.1    1.8  2  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
      0.092   12.4   0.1       0.36   10.5   0.0    1.9  2  PF00531.17 Death domain
       0.44   10.6   4.0       0.74    9.9   0.2    2.7  2  PF07499.8  RuvA, C-terminal domain


Domain annotation for each model (and alignments):
>> PF09280.6  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   4.3   8.4e-24   1.3e-20       3      58 ..     212     267 ..     210     268 .. 0.95
   2 ?   -3.5   0.3       4.3   6.5e+03      16      21 ..     333     338 ..     324     350 .. 0.49

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 8.4e-24
    PF09280.6   3 fLrdqpqfqqlrqvvqqnPelLqplLqqLgqsnPqllqlIqqnqeeFlrlLnegae 58 
                   +r +p+f+++rq vqqnP++Lq++LqqLgq++PqllqlI qnq +Fl+  ne+++
  MMETSP0890-20130614|11746_1 212 TIRAHPRFAEIRQTVQQNPASLQTMLQQLGQTDPQLLQLIHQNQAAFLAAVNEPSS 267
                  689*************************************************9875 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.3
    PF09280.6  16 vvqqnP 21 
                    q+ P
  MMETSP0890-20130614|11746_1 333 QMQSMP 338
                  333333 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.3   6.2e-17   9.5e-14       1      69 []      22      92 ..      22      92 .. 0.98

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 6.2e-17
                 EESSSEEEEEEECTTSBHHHHHHHHHHHHT.S-GGGEEEEE---BETTTSBTTTTTT-TTE.EEEEEESSS CS
   PF00240.18  1 ktlsgktitlevepsdtvselKekieekeg.ipvdqqrLiysGkvLeDdrtlseyniqdgs.tlhlvlrlr 69
                 ktl gk++++e +p++t++ +K+ ie k+  + +d ++Li+sGkvL+D+ tl e +++++s  +++v++++
  MMETSP0890-20130614|11746_1 22 KTLEGKVFKVEANPEETIAGVKKIIETKQPeLKADLMKLIHSGKVLKDSETLVEKGVTEQSfLVCMVTKPK 92
                 89*****************************************************************9975 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.4   5.4e-09   8.1e-06       2      37 .]     146     182 ..     145     182 .. 0.96
   2 !   23.1   0.4   2.7e-08   4.1e-05       2      37 .]     369     404 ..     368     404 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.4e-09
                  THHHHHHHHH----HH.HHHHHHHHTTTSHHHHHHHH CS
   PF00627.26   2 deeaiqqLreMGfsre.eakkALratnnnvErAveyL 37 
                  ++ea ++L +MGf+ + + + AL+a+ +nv+ Ave+L
  MMETSP0890-20130614|11746_1 146 TAEAMATLEAMGFGHSdQSRAALEAAMGNVDLAVEFL 182
                  58999******************************98 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.7e-08
                  THHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
   PF00627.26   2 deeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                   ++a+ +L e+Gfsr++a +A+ a++ n+  A++ L
  MMETSP0890-20130614|11746_1 369 EADAVNRLTELGFSRDDAAQAYLACDKNESLAANLL 404
                  689**************************9999987 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.2e-06    0.0064      23      68 ..      36      80 ..      21     141 .. 0.84
   2 ?   -1.0   0.0       1.2   1.8e+03      29      52 ..     222     254 ..     210     299 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.2e-06
    PF10302.4 23 sltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasdlkee 68
                 + t+a+ k++i ++  ++l+   ++lI++GkvL+d+++l ++   e
  MMETSP0890-20130614|11746_1 36 EETIAGVKKIIETKQ-PELKADLMKLIHSGKVLKDSETLVEKGVTE 80
                 56999******9999.9********************998776555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.2
    PF10302.4  29 LkrliRerl.........pgdlsrrrLrlIyaG 52 
                  ++++++++           g+++ + L lI++ 
  MMETSP0890-20130614|11746_1 222 IRQTVQQNPaslqtmlqqLGQTDPQLLQLIHQN 254
                  444444444444444444478888889999864 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.1e-06     0.012       8      72 ..      22      79 ..      15      98 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.1e-06
                 EE----EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE----B--TTSBGGGGS-- CS
    PF13881.1  8 rlvdGkDigpfkfseattvaelkekvlaeWpkekeskpksandlklilaGkiLednktLkelrlp 72
                  + +Gk +  ++ +++ t+a +k+ +  + p        +a+ +kli++Gk+L+d++tL e +++
  MMETSP0890-20130614|11746_1 22 KTLEGK-VFKVEANPEETIAGVKKIIETKQP------ELKADLMKLIHSGKVLKDSETLVEKGVT 79
                 555777.777777777777777776633322......2345678***************998765 PP

>> PF09838.4  Uncharacterized protein conserved in bacteria (DUF2065)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.055        83      20      41 ..     230     251 ..     228     251 .. 0.91
   2 ?   10.7   0.1   0.00019      0.29      18      46 ..     322     351 ..     319     355 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.055
    PF09838.4  20 PsawrrmleqlaelpdrqLRli 41 
                  P  ++ ml+ql +++++ L+li
  MMETSP0890-20130614|11746_1 230 PASLQTMLQQLGQTDPQLLQLI 251
                  8999*************99875 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00019
    PF09838.4  18 laPsawrrmleqlaelpdrqLRli.Glvlm 46 
                  l P+++++ ++q+ ++p +qLR + G +++
  MMETSP0890-20130614|11746_1 322 LTPDQLEQFARQMQSMPRDQLRQLlGAFAA 351
                  78*******************975155544 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.5e-05     0.038       3      67 ..      19      83 ..      17      88 .. 0.90
   2 ?   -3.4   0.0       4.8   7.3e+03      41      48 ..     400     407 ..     394     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.5e-05
                 EEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEE CS
    PF11976.3  3 ivlkgkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdt 67
                 + +k+ +gk +k++ +p++t++ +++   +k+   + + ++Li  G+ L++ +t+ + +++++++
  MMETSP0890-20130614|11746_1 19 VSIKTLEGKVFKVEANPEETIAGVKKIIETKQPELKADLMKLIHSGKVLKDSETLVEKGVTEQSF 83
                 789**************************99976666******************9999998876 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.8
                  T-EEE--- CS
    PF11976.3  41 qvrLiFDG 48 
                   ++L+FDG
  MMETSP0890-20130614|11746_1 400 AANLLFDG 407
                  5789***9 PP

>> PF00531.17  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.5   2.2e+03      28      53 ..     221     243 ..     220     252 .. 0.56
   2 ?   10.5   0.0   0.00023      0.36       7      53 ..     305     352 ..     299     358 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.5
                  HHHHHHHHSTTHHHHHHHHHHHHHHH CS
   PF00531.17  28 eideiesenprlrsqtyelLqlWeqr 53 
                  ei+++ ++np       ++Lq+  q 
  MMETSP0890-20130614|11746_1 221 EIRQTVQQNP---ASLQTMLQQLGQT 243
                  5666666665...5555566655555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00023
                  HHCSCHHCHHHHHHHTTS-HHHHHHHHHHSTT.HHHHHHHHHHHHHHH CS
   PF00531.17   7 ldellgkdWkelarkLglsedeideiesenpr.lrsqtyelLqlWeqr 53 
                  +++ ++++  ++a   gl++d+++++ ++ +   r+q ++lL ++ + 
  MMETSP0890-20130614|11746_1 305 MASITPQQRAQVAATVGLTPDQLEQFARQMQSmPRDQLRQLLGAFAAG 352
                  56667888899*****************8888899*******988765 PP

>> PF07499.8  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.35   5.3e+02       3      17 ..     146     160 ..     145     180 .. 0.65
   2 ?    9.9   0.2   0.00049      0.74       4      27 ..     370     393 ..     368     404 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.35
    PF07499.8   3 ledaveALlaLGYke 17 
                  +++a+++L+a G+  
  MMETSP0890-20130614|11746_1 146 TAEAMATLEAMGFGH 160
                  68999***9999964 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00049
    PF07499.8   4 edaveALlaLGYkekeAekAvakv 27 
                  +dav+ L  LG+++ +A++A  + 
  MMETSP0890-20130614|11746_1 370 ADAVNRLTELGFSRDDAAQAYLAC 393
                  799999*************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      459  (0.0335723); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.49s 00:00:01.30 Elapsed: 00:00:00.78
# Mc/sec: 1419.38
//
Query:       MMETSP0890-20130614|11750_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-18   65.1   3.4    6.1e-18   64.6   2.4    1.2  1  PF05405.9  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
    0.00035   20.2   0.4    0.00035   20.2   0.3    2.1  2  PF00430.13 ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> PF05405.9  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   2.4   8.9e-22   6.1e-18      11     163 .]      57     209 ..      48     209 .. 0.97

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 8.9e-22
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------TTTTTTTTTTTSSTTHHHHTTTHHHHHHTHHHHTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHS-G.GGSHCCHHHHHHH CS
    PF05405.9  11 yvvneEtivalcfigflilvakslgpsikefldkriekiqeelnqsrnekekalkerieqqkklqslveetksLfevskeqvaleaeaaerelqaklareikkkldtlveaessrrqrlQdelvkgvissVlkelsnpkfkkktlqesiadle 163
                  + + eEt ++ +f++f  l++k++g+s++e+ldkr   iq+e  +  +e ++ lk+ ++ ++++++ ++ ++s+  +++  + +++ea   e ++++   + k ld lv +e++ +  + ++l+ +  +sV +++ + ++k+k+l+e+i+ le
  MMETSP0890-20130614|11750_1  57 LMLSEETQLVGSFMLFCGLMYKYTGDSFAEMLDKRSADIQAEHSALEDEAIEELKDCVKVHEQTIEALSQISSIPVMQRSLTDRLIEAKHGEMKHNIREKFVKFLDDLVFHEEQANSIMTQTLLAQAADSVTAQFESAEIKEKALNEAIKCLE 209
                  56789************************************************************************************************************************************************9876 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   5.1e-08   0.00035       7     129 ..      67     189 ..      62     192 .. 0.94
   2 ?    0.7   1.4     0.054   3.7e+02      52      83 ..     179     209 ..     167     216 .. 0.55

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.1e-08
   PF00430.13   7 inflilvglliylgykpLgkiLdeRkekIankikeaeerlkeaaellaeaeqqleqArkeaseiienakkeaqklkeeilaeaekdierllesakaeiekekeqalaelrkqvaaLalqiaek 129
                    f+++ gl++++  + ++++Ld+R + I+++ +  e+ + e  +   +  +q  +A  ++s i    ++ +++l+e++  e +  i+    +  +++   +eqa     +   a+a + + +
  MMETSP0890-20130614|11750_1  67 GSFMLFCGLMYKYTGDSFAEMLDKRSADIQAEHSALEDEAIEELKDCVKVHEQTIEALSQISSIPVMQRSLTDRLIEAKHGEMKHNIREKFVKFLDDLVFHEEQANSIMTQTLLAQAADSVTA 189
                  479************************************9999999999999******************************************************99999999999887766 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.054
   PF00430.13  52 llaeaeqqleqArkeaseiienakkeaqklke 83 
                  lla+a +   +A+ e++ei+e+a +ea k +e
  MMETSP0890-20130614|11750_1 179 LLAQAADS-VTAQFESAEIKEKALNEAIKCLE 209
                  33333333.35666666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       711  (0.0520041); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.71
# Mc/sec: 934.92
//
Query:       MMETSP0890-20130614|11752_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 623.76
//
Query:       MMETSP0890-20130614|11754_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-15   55.5   0.1    5.3e-15   55.3   0.1    1.1  1  PF10785.4  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
  ------ inclusion threshold ------
      0.088   12.8   0.4       0.11   12.5   0.3    1.1  1  PF01478.13 Type IV leader peptidase family


Domain annotation for each model (and alignments):
>> PF10785.4  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.1   7.8e-19   5.3e-15       2      87 .]       6      84 .]       5      84 .] 0.96

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 7.8e-19
    PF10785.4  2 ktdYpvIdsdPhikrvvryfRpsDyvlaaaataasplllylmervspsrvgkakapamrlagliglvggfllayqrSsnRllGfte 87
                 ++++ vId+dP++ + ++    sDy+   ++t  s++++++ ++  +       ++++++a +ig ++gfl+ y+ ++nRl+G+te
  MMETSP0890-20130614|11754_1  6 EPRFDVIDPDPSLVTAIKHWGISDYLTLIGVTGGSYIYGWALGKPLR-------PQTASTAAIIGSTFGFLYLYSCTVNRLMGYTE 84
                 699*************************************9999876.......89****************************98 PP

>> PF01478.13  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.5e-05      0.11      15      72 ..      22      82 ..      18      83 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.5e-05
   PF01478.13 15 ldtrelpdeltlpllllgllfs.lallgllslaeallgalagllvlfli..slveeeamGg 72
                 +++  ++d+ltl+++  g  +  +al+ +l  ++a  +a++g    fl+  s +  + mG+
  MMETSP0890-20130614|11754_1 22 IKHWGISDYLTLIGVTGGSYIYgWALGKPLRPQTASTAAIIGSTFGFLYlySCTVNRLMGY 82
                 5777899******999998777788888888888877776665544441113556668887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 287.56
//
Query:       MMETSP0890-20130614|11756_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 706.51
//
Query:       MMETSP0890-20130614|11751_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   13.9   0.6        7.7    5.9   0.0    2.5  2  PF05494.7 Toluene tolerance, Ttg2
       0.94    9.5   4.3       0.91    9.6   0.0    2.5  3  PF09969.4 Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> PF05494.7  Toluene tolerance, Ttg2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0011       7.7       1      49 [.      25      73 ..      25      90 .. 0.87
   2 ?    5.6   0.1    0.0014       9.3       4      67 ..     121     184 ..     109     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0011
    PF05494.7  1 vqkvveevleilksdkakkkadpeelrakveellepyfDferiarlvlG 49
                 v+k+ +++ +++ ++ a+ k+dp+++ a++++l++  +D+  ++r v  
  MMETSP0890-20130614|11751_1 25 VNKLFKQATTVVADHVATAKSDPKAYAAEIKKLVSAGIDLSSATRAVAC 73
                 66778899999999999999*************************9976 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0014
    PF05494.7   4 vveevleilksdkakkkadpeelrakveellepyfDferiarlvlGkk.wrkaspeqraeFteaf 67 
                   ve+v +  k++k++ ka +e  ++++++++ +y   + +  + l +k  r+++ ++ + F  a+
  MMETSP0890-20130614|11751_1 121 KVETVTRPAKKAKLT-KAAAETAKDDFSQEFAEYHGATGALMKLLRRKwLRRFTSDELEYFALAM 184
                  566666777777776.58889999**********************996699**99999997665 PP

>> PF09969.4  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00013      0.91      37     104 ..      17      85 ..       4      91 .. 0.71
   2 ?    0.9   0.1     0.066   4.5e+02      12      65 ..      99     152 ..      88     174 .. 0.55
   3 ?   -3.8   0.0       1.9   1.3e+04      35      43 ..     299     307 ..     289     332 .. 0.40

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
    PF09969.4  37 eeaekele.aeelkeeleeleeqiraaieeieelGvevkdldegLvDFpalldgeevylCWklgEeeik 104
                  + ++++++ ++  k++++ +++++ +a ++ +++ +e+k l +  +D  + ++     lCW ++E+e +
  MMETSP0890-20130614|11751_1  17 NIKSEKMSvNKLFKQATTVVADHVATAKSDPKAYAAEIKKLVSAGIDLSSATRAVACALCWATDERETA 85 
                  22333333033344555666677777777789999******************************9866 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.066
    PF09969.4  12 lpeieelleev...kelkaeleeleealeeaekeleaeelkeeleeleeqiraaiee 65 
                  lpe+ ++l+ +   +++++ ++++e+ ++ a+   +a+ +k+++e++++ ++++++e
  MMETSP0890-20130614|11751_1  99 LPEVVKMLKLLdapRRARQAAKKVETVTRPAK---KAKLTKAAAETAKDDFSQEFAE 152
                  56666666555333444444444433333332...3445555556666666665555 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.9
    PF09969.4  35 aleeaekel 43 
                    + ++++l
  MMETSP0890-20130614|11751_1 299 LNHTIKQRL 307
                  222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.37s 00:00:01.33 Elapsed: 00:00:01.89
# Mc/sec: 768.36
//
Query:       MMETSP0890-20130614|11757_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-21   73.9   0.1    1.9e-20   72.8   0.1    1.5  2  PF04930.10 FUN14 family
    1.1e-05   24.4   5.5     0.0059   15.7   0.5    2.4  2  PF13202.1  EF hand
    2.2e-05   23.8   0.5      0.032   13.9   0.1    2.6  2  PF13405.1  EF-hand domain
    0.00017   21.5   1.0       0.17   11.9   0.2    2.3  2  PF13499.1  EF-hand domain pair
    0.00025   20.0   2.1       0.33   10.2   0.4    2.5  2  PF00036.27 EF hand
     0.0027   17.1   0.8        2.6    7.8   0.0    2.5  2  PF00404.13 Dockerin type I repeat
  ------ inclusion threshold ------
      0.037   13.5   2.0        5.3    6.6   0.1    2.5  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF04930.10  FUN14 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.8   9.5e+03      38      55 ..      29      46 ..       3      62 .. 0.58
   2 !   72.8   0.1   9.8e-24   1.9e-20       1     100 []     123     223 ..     123     223 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 4.8
   PF04930.10 38 aqkGlikinwkklekkvd 55
                 ++ G+ +  w k +kk++
  MMETSP0890-20130614|11757_1 29 TYLGVAECSWFKSDKKIK 46
                 445555555555444444 PP

  == domain 2    score: 72.8 bits;  conditional E-value: 9.8e-24
   PF04930.10   1 qlgiGalsGlvtGyalkkvgklaaiavGggilllqilaqkGlikinwkklekkvdkvaekve.adkaekevdtllkkaedllkkniiflaaFlaGfllGfa 100
                  ql+ G  sG+++G+a kk+gk+++++vGg + llq la++G+i ++  ++ek+ + + +     + +  ++++  +k++++l+ n++  ++F+aG+llG++
  MMETSP0890-20130614|11757_1 123 QLSWGFCSGYCAGFAGKKIGKVVMVFVGGIFCLLQGLAYNGYIVVDRARIEKDFNDAFDLNHdGKLDSLDLQSAYDKLFSILSYNMPSGSGFAAGLLLGLR 223
                  899*****************************************************98877756778889*****************************86 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00012      0.23       6      18 ..      69      81 ..      68      83 .. 0.86
   2 !   15.7   0.5     3e-06    0.0059       3      22 ..     175     194 ..     172     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
                 HHH--S----B-H CS
    PF13202.1  6 rafDlNgDGkIsr 18
                 +++DlN+DG I+ 
  MMETSP0890-20130614|11757_1 69 KRLDLNKDGVIDE 81
                 789********96 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 3e-06
                  HHHH.HH--S----B-HHHHH CS
    PF13202.1   3 dtFr.afDlNgDGkIsreELk 22 
                  d F+ afDlN DGk++  +L+
  MMETSP0890-20130614|11757_1 175 D-FNdAFDLNHDGKLDSLDLQ 194
                  6.777***********88876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0019       3.6       7      21 ..      69      83 ..      68      91 .. 0.88
   2 !   13.9   0.1   1.7e-05     0.032       8      28 ..     179     199 ..     178     212 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
                 GCC-------B---H CS
    PF13405.1  7 klfDkdgdGkidaeE 21
                 k +D ++dG id ++
  MMETSP0890-20130614|11757_1 69 KRLDLNKDGVIDEKD 83
                 579*********987 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.7e-05
                  CC-------B---HHHHHHH. CS
    PF13405.1   8 lfDkdgdGkidaeELrdaLrk 28 
                  +fD ++dGk+d  +L++a+ k
  MMETSP0890-20130614|11757_1 179 AFDLNHDGKLDSLDLQSAYDK 199
                  7****************9985 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0013       2.5      47      61 ..      69      83 ..      47     108 .. 0.70
   2 !   11.9   0.2   8.8e-05      0.17       7      30 ..     178     201 ..     168     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0013
    PF13499.1 47 kelDkngdGvlsfeE 61
                 k+lD+n+dGv++  +
  MMETSP0890-20130614|11757_1 69 KRLDLNKDGVIDEKD 83
                 455666666555433 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8.8e-05
    PF13499.1   7 kllDkdgdgyldkeeLlrllkhlg 30 
                  +++D ++dg+ld  +L+ + ++l 
  MMETSP0890-20130614|11757_1 178 DAFDLNHDGKLDSLDLQSAYDKLF 201
                  679**************9988876 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0005      0.97       7      21 ..      69      83 ..      68      87 .. 0.88
   2 !   10.2   0.4   0.00017      0.33       7      26 ..     178     197 ..     174     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0005
                 HHHCTTTSSEBEHHH CS
   PF00036.27  7 kefDkDgdGkIsfeE 21
                 k +D ++dG I+ ++
  MMETSP0890-20130614|11757_1 69 KRLDLNKDGVIDEKD 83
                 679*********875 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00017
                  HHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   7 kefDkDgdGkIsfeEfkeal 26 
                  + fD ++dGk++  ++++a+
  MMETSP0890-20130614|11757_1 178 DAFDLNHDGKLDSLDLQSAY 197
                  67**********99998876 PP

>> PF00404.13  Dockerin type I repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.2    0.0016       3.2       1      14 [.      72      85 ..      72      86 .. 0.85
   2 !    7.8   0.0    0.0013       2.6       1      13 [.     181     193 ..     181     194 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
                 -TT-SS--SHHHHH CS
   PF00404.13  1 DVNgDGkVnalDla 14
                 D+N DG+++  D++
  MMETSP0890-20130614|11757_1 72 DLNKDGVIDEKDAL 85
                 9*******977776 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0013
                  -TT-SS--SHHHH CS
   PF00404.13   1 DVNgDGkVnalDl 13 
                  D+N DGk ++lDl
  MMETSP0890-20130614|11757_1 181 DLNHDGKLDSLDL 193
                  99**********8 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.004       7.9      32      46 ..      69      83 ..      68      85 .. 0.90
   2 ?    6.6   0.1    0.0027       5.3      32      43 ..     178     189 ..     177     200 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.004
    PF13833.1 32 refDtdgdGkisfeE 46
                 + +D+++dG i++++
  MMETSP0890-20130614|11757_1 69 KRLDLNKDGVIDEKD 83
                 789*********987 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0027
    PF13833.1  32 refDtdgdGkis 43 
                  ++fD+++dGk++
  MMETSP0890-20130614|11757_1 178 DAFDLNHDGKLD 189
                  68********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.99
# Mc/sec: 544.63
//
Query:       MMETSP0890-20130614|11753_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.2e-263  872.8   9.8   8.4e-263  872.6   6.8    1.0  1  PF00012.15 Hsp70 protein
    1.1e-16   60.2   0.7    7.3e-15   54.2   0.1    2.2  2  PF06723.8  MreB/Mbl protein
    2.8e-05   23.2   1.3     0.0016   17.4   0.1    2.7  2  PF01968.13 Hydantoinase/oxoprolinase
  ------ inclusion threshold ------
      0.076   12.7   2.2        1.5    8.5   0.1    3.1  2  PF14450.1  Cell division protein FtsA


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  872.6   6.8  2.5e-266  8.4e-263       1     602 []      49     657 ..      49     657 .. 0.99

  Alignments for each domain:
  == domain 1    score: 872.6 bits;  conditional E-value: 2.5e-266
                  EEXEEXXXXEEBXEEEXXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXTTCHHHCSSS..SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC....GGGSSHHHH...HHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHHHH CS
   PF00012.15   1 viGiDLGttnsvvavmeggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaAvqaavlsge..eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleee....kekvseaek...ekkveeaieelkeelegedkeeieakleelekvvekiveklye 602
                  viGiDLGtt+s+v+v ++g+ve+ian++gnr+tPs+va++++ +rlvG+aAk+qa++np+ntvf+vkrliGrk+++++vq+++k +p++v+ k ++k++v+ve++gekk+f+pee+samvL k+++tae++lg+++++av+tvPaYFndaqRqatkdAg+i G+ v Ri+neptaaa+aYG+dkk+ e+n+lvfDlGggtfdv +l+i++Gvfev+at+gDthlGGedfD+++++++++ +kkk+g+dl++dk+a+q+Lr+++e++K++LS+  q+++++eie+l++ g+d+se+ltRa+feeL+ dl+++tl pv+k+l+d++l k +ide+vlvGGstRiPkvq+l+k++fg keps+++npDeavA+GaAvq+++lsg+  e+v+dllllDvtpLs giet ggvmtkli+rnt+iptkksq+fst++dnq+av i+v++ger+l+kdn+llgkfeltgippaprGvpqieVtf+idanGil+vsa+dk+tgk ekiti+a++g lse+eie+mv+eae++a+ed+k ke+i+a+n le+++y+l+++le++    ++k+s+++k   e++++ea+++l+e+  + dkee+e+k++e+e+v+++i+++ly+
  MMETSP0890-20130614|11753_1  49 VIGIDLGTTYSCVGVYQNGRVEIIANDQGNRITPSYVAWDNSgDRLVGDAAKNQATINPENTVFDVKRLIGRKYNEKSVQADKKLFPFNVIPK-DDKPYVQVEVNGEKKTFAPEEVSAMVLAKMRQTAETFLGNEIKHAVVTVPAYFNDAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDKKEGEKNILVFDLGGGTFDVTLLTIDNGVFEVLATNGDTHLGGEDFDQRVMQYFIKMIKKKDGVDLQSDKRAIQKLRREVERVKRALSN--QHQARVEIEALYD-GTDFSETLTRARFEELNLDLFKKTLGPVSKVLEDGDLAKADIDELVLVGGSTRIPKVQSLLKDYFGgKEPSRGINPDEAVAYGAAVQGGILSGAqdESVSDLLLLDVTPLSQGIETVGGVMTKLISRNTVIPTKKSQTFSTYQDNQPAVLIQVFEGERSLTKDNHLLGKFELTGIPPAPRGVPQIEVTFEIDANGILQVSAEDKGTGKAEKITITAEKGrLSEEEIERMVQEAEQYADEDRKVKERIDARNGLESYLYNLKNTLEDDekglADKLSADDKeeiESTITEALDWLDEN-PEADKEEYEEKQKEVEQVTSPIMRNLYQ 657
                  79******************************************************************************************9.99********************************************************************************************************************************************************************************..9***********9.*********************************************************************************************97788***********************************************************************************************************************************************************************99888889999999988889999999****99.5889*******************99986 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0033        11       3      47 ..      49     100 ..      47     112 .. 0.63
   2 !   54.2   0.1   2.1e-18   7.3e-15      92     315 ..     182     416 ..     159     421 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0033
                  EE--B----EEEE..--------E.EE......ES-EEEEST---EEE---TTC CS
    PF06723.8   3 dlgiDLGtantlv..yvkgkgivl.ne......psvvAikkktkkvlavGeeAk 47 
                   +giDLGt+   v  y++g+  ++ n+      ps vA +++  ++  vG+ Ak
  MMETSP0890-20130614|11753_1  49 VIGIDLGTTYSCVgvYQNGRVEIIaNDqgnritPSYVAWDNSGDRL--VGDAAK 100
                  59*******9987447777654441323333337777777666554..455555 PP

  == domain 2    score: 54.2 bits;  conditional E-value: 2.1e-18
                  S--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS----.EEEE-----EEEEEE----EE.....EEEEES----HHHHHHHHH....HHHHHSB--..--HHHHHHHHH----S--HHHH.-EEE---BTT------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH----.-EE-SSTTTTTT--- CS
    PF06723.8  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavislggiv.....tsksvrvaGdeldeaiiky....irkkynlli..Gertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglp.vkvaedpltcvakGt 315
                  + ++ v++vP   ++ +r+A k+a +  G +   +i+ep aAAi  g++ +e + n +v d+Gggt +v+++++ + v     t    +++G+++d+ +++y    i+kk  + +   +r  +k++ e+  ++   +++ + +++   l  g   + +++ ++ +e   + +++ +  v++vLe+   +La+  +d+ +vl+GG++ +  +++ll++ +g +  + + +p ++va G+
  MMETSP0890-20130614|11753_1 182 EIKHAVVTVPAYFNDAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDKKEGEKNiLVFDLGGGTFDVTLLTIDNGVfevlaTNGDTHLGGEDFDQRVMQYfikmIKKKDGVDLqsDKRAIQKLRREVERVKRALSNQhQARVEIEALYDGTDFSETLTRARFEELNLDLFKKTLGPVSKVLED--GDLAKADIDE-LVLVGGSTRIPKVQSLLKDYFGGKePSRGINPDEAVAYGA 416
                  557789*********************************************998773678*************9764412222456789**********9986555677766655115678899******99988776669999999*************************************8..5787555554.7888***************997651456677777777776 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.1    0.0064        22      73     102 ..      43      72 ..      36      83 .. 0.86
   2 !   17.4   0.1   4.8e-07    0.0016      50      95 ..     208     254 ..     163     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0064
   PF01968.13  73 laglknaivvDvGGTstDvalisdgepels 102
                  +++l ++i++D G T + v+++++g++e+ 
  MMETSP0890-20130614|11753_1  43 QEDLGTVIGIDLGTTYSCVGVYQNGRVEII 72 
                  467889*********************985 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.8e-07
   PF01968.13  50 arekpvetilSGPaagvvgaaa.elaglknaivvDvGGTstDvalis 95 
                  +++  v+ i   P+a ++++ + + +g+kn++v+D GG ++Dv l++
  MMETSP0890-20130614|11753_1 208 ISGMTVQRIINEPTAAAIAYGMdKKEGEKNILVFDLGGGTFDVTLLT 254
                  556667778888999999999999*******************8753 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00045       1.5       1      24 [.      49      72 ..      49      81 .. 0.86
   2 ?    2.5   0.1     0.032   1.1e+02      53      75 ..     169     299 ..     162     409 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00045
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    PF14450.1  1 valvDiGagktdvavaekgklgel 24
                 v+++D+G++ ++v v+++g    +
  MMETSP0890-20130614|11753_1 49 VIGIDLGTTYSCVGVYQNGRVEII 72
                 79****************877655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.032
                  xxxxxxxxxxxxxxxxxxxxxx............................................................................................................x RF
    PF14450.1  53 ktaveeAeriaklkigsaivss............................................................................................................g 75 
                   +  ++Ae   + +i++a+v++                                                                                                            +
  MMETSP0890-20130614|11753_1 169 AKMRQTAETFLGNEIKHAVVTVpayfndaqrqatkdagtisgmtvqriineptaaaiaygmdkkegeknilvfdlgggtfdvtlltidngvfevlatngdthlggedfdqrvmqyfikmikkkdgvdlqsD 299
                  55566666666666676666546666555555444444444444555555555555555555555555555555555555555555555555555555555555555544444444444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1201  (0.0878438); expected 273.4 (0.02)
Passed bias filter:                      556  (0.0406671); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.27u 0.38s 00:00:01.65 Elapsed: 00:00:01.52
# Mc/sec: 1073.63
//
Query:       MMETSP0890-20130614|11760_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   19.0   1.7     0.0013   18.8   1.2    1.1  1  PF13675.1 Type IV pili methyl-accepting chemotaxis transducer N-term
  ------ inclusion threshold ------
      0.067   12.5   0.1      0.068   12.5   0.1    1.1  1  PF12366.3 Cancer susceptibility candidate 1
       0.15   10.8   1.1       0.16   10.7   0.8    1.0  1  PF14362.1 Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF13675.1  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.2   2.9e-07    0.0013      42     100 ..      11      66 ..       2      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.9e-07
    PF13675.1  42 eearalleqsieefeatlaaLqrgddsrgaseevkaqlaqvealweelrplleaaast.y 100
                  ++++a l+ +++   +++ +Lq+ +++  ++++ k +l+q+ea++e +++ ++aa+++  
  MMETSP0890-20130614|11760_1  11 NRYAAVLDVARK--VRQHTELQQLSQA--QPDDTKPLLFQLEAEYEAYKADIKAAEDAaK 66 
                  456677777777..699**********..99******************99988777541 PP

>> PF12366.3  Cancer susceptibility candidate 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.5e-05     0.068      52      92 ..      34      74 ..       5      87 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.5e-05
    PF12366.3 52 llqkdiqneiiekleterveyeeaiskteeeakaargyktd 92
                 ++q+d+ + ++++le+e+++y++ i+ +e +ak++++++  
  MMETSP0890-20130614|11760_1 34 QAQPDDTKPLLFQLEAEYEAYKADIKAAEDAAKEKEAESVT 74
                 345555559*****************555555554444332 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   3.6e-05      0.16     117     181 ..      24      88 ..      13      89 .] 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.6e-05
    PF14362.1 117 kqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkG 181
                  +q+ e +++ ++  ++ ++ l +l+ae++a++a +++a+++ +++e+e  + ++ ++ t ++G+G
  MMETSP0890-20130614|11760_1  24 RQHTELQQLSQAQPDDTKPLLFQLEAEYEAYKADIKAAEDAAKEKEAESVTIADARSYTDDPGAG 88 
                  23333333333333358899999999999999999999999999999999988888899999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       739  (0.0540521); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.55
# Mc/sec: 387.77
//
Query:       MMETSP0890-20130614|11759_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 789.39
//
Query:       MMETSP0890-20130614|11763_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.21   11.3   0.0    1.2  1  PF12009.3 Telomerase ribonucleoprotein complex - RNA binding domain


Domain annotation for each model (and alignments):
>> PF12009.3  Telomerase ribonucleoprotein complex - RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.6e-05      0.21      69     107 ..     112     150 ..      98     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.6e-05
                  ......-SSSHHHHHHHHHHHHHHHTHHHHHHHHEEEEE CS
    PF12009.3  69 kskqskesekrkelllkflywlfeelviplirsfFYvTe 107
                   + +++  ++r++++  f + l+ +++ip+++ f+Yv +
  MMETSP0890-20130614|11763_1 112 FKSRAQTKKNRNKYVGIFAVLLVGSFIIPMVQYFWYVRD 150
                  3333447899999***********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 766.83
//
Query:       MMETSP0890-20130614|11762_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.59
# Mc/sec: 1409.38
//
Query:       MMETSP0890-20130614|11767_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-66  220.7   0.5    8.2e-66  219.9   0.3    1.4  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
    9.2e-39  131.9   0.8    1.6e-38  131.2   0.5    1.4  1  PF00763.18 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
     0.0019   16.9   0.2     0.0043   15.7   0.1    1.6  2  PF02423.10 Ornithine cyclodeaminase/mu-crystallin family
  ------ inclusion threshold ------
       0.13   12.1   0.0        5.4    6.8   0.0    2.3  2  PF00077.15 Retroviral aspartyl protease


Domain annotation for each model (and alignments):
>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.3   2.4e-69   8.2e-66       2     159 ..     136     300 ..     135     302 .. 0.97

  Alignments for each domain:
  == domain 1    score: 219.9 bits;  conditional E-value: 2.4e-69
                  TTT---TTTT..--SS--HHHHHHHHHHHH--..--S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-ST---HHHHSSEEEE-------B-GGG-----EEEE---EEC.......TTEEE--B-HHHHHTTSSEE----------HHHHHHHHHHHHHHH CS
   PF02882.14   2 pvnlgklvkg..eeallpctpkgivellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeilreaDivvvavGkpelvkaemvkegavviDvGinrv.....kekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 159
                   +n+g l+++  ++  +pctp+g+vell+++g+el+gk++v++Grsnivg pla +L   +atVtvchskt++l++++ +aD++++avGkp  v+a+++k+g vviDvGin v      ++++lvGDvdf+++ +vas+itPvpgGVGpmT+aml+ n+l+ +++
  MMETSP0890-20130614|11767_1 136 AYNVGLLAMKggQPLARPCTPAGCVELLRRYGVELAGKHAVILGRSNIVGAPLASMLVDCDATVTVCHSKTQQLSNFVAQADVLIAAVGKPLYVQADWLKPGCVVIDVGINAVdddstPKGYRLVGDVDFDKAIHVASLITPVPGGVGPMTIAMLMDNVLNLTRN 300
                  68*****9988899***************************************************************************************************9999888999*************************************98765 PP

>> PF00763.18  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.5   4.6e-42   1.6e-38       2     117 .]      16     132 ..      15     132 .. 0.99

  Alignments for each domain:
  == domain 1    score: 131.2 bits;  conditional E-value: 4.6e-42
   PF00763.18   2 ildGkelakkikeelkeeveklkek.gvkpkLavilvgddpaskvYvrskekaaeelGieseliklpediteeellaeieklnedssvhGilvqlPlpkhldeekileaidpeKDvD 117
                  +ldGk+ a+ i+eelk+eve l ++ +v+p+L vilvgd+ +s +Yvr+k k a++lGi++  +kl+++++eee+l +++++n+d+++hGilvqlPlp+h+d++k++++++p+KDvD
  MMETSP0890-20130614|11767_1  16 LLDGKATAEIIREELKKEVEILMQNhQVRPGLGVILVGDRADSASYVRMKSKVAKQLGIAIADLKLNANVSEEEVLMAVDSMNRDPDIHGILVQLPLPDHMDANKVVARVAPQKDVD 132
                  79***********************9******************************************************************************************9 PP

>> PF02423.10  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.36   1.2e+03     287     300 ..      66      79 ..      29      88 .. 0.59
   2 !   15.7   0.1   1.3e-06    0.0043     171     243 ..     189     262 ..     173     271 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.36
                  EEEEE----HHHHH CS
   PF02423.10 287 itvfdstGlaveDv 300
                    v++ +G+a++D 
  MMETSP0890-20130614|11767_1  66 SKVAKQLGIAIADL 79 
                  34666677777776 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.3e-06
                  HHHHH..H----EEE-THHH....HTSSSEEEE----SS..-SB-CCC-----EEEE----------B-HHHHHTEE CS
   PF02423.10 171 aenvqefefevvavksaeea....vegadivvTvTaakeaapilkaewvkpGahinavgadrpgktelddeilkrad 243
                  a+++   ++ v++++s+ +     v++ad+++++  +     +++a+w+kpG  +  vg ++ +++ + +  +++ d
  MMETSP0890-20130614|11767_1 189 ASMLVDCDATVTVCHSKTQQlsnfVAQADVLIAAVGKPL---YVQADWLKPGCVVIDVGINAVDDDSTPKGYRLVGD 262
                  55666667777777776553233399********99998...9********************99998887766655 PP

>> PF00077.15  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.029        98       9      34 ..       5      30 ..       2      66 .. 0.86
   2 ?    6.8   0.0    0.0016       5.4      13      57 ..     185     229 ..     168     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.029
                 EEEEEE-EEEEEE-----S-EEECCC CS
   PF00077.15  9 tvkvngkpikaLlDTGAditvlkend 34
                 t++v++k+   LlD  A+  +++e+ 
  MMETSP0890-20130614|11767_1  5 TINVEKKSSASLLDGKATAEIIREEL 30
                 7999999***************9986 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0016
                  EE-EEEEEE-----S-EEECCCS-TTT-EE-------------EE CS
   PF00077.15  13 ngkpikaLlDTGAditvlkendlplswpaekkpttigGiggqirv 57 
                  + +   +L+D  A++tv  ++  +ls+ ++++++ i  +g +  v
  MMETSP0890-20130614|11767_1 185 GAPLASMLVDCDATVTVCHSKTQQLSNFVAQADVLIAAVGKPLYV 229
                  555678********************9999999999888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:01.06
# Mc/sec: 761.86
//
Query:       MMETSP0890-20130614|11768_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1094  (0.0800176); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.93
# Mc/sec: 329.82
//
Query:       MMETSP0890-20130614|11769_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-54  181.6   1.1    7.2e-54  180.7   0.8    1.5  1  PF01092.14 Ribosomal protein S6e
  ------ inclusion threshold ------
      0.061   13.1   0.0       0.14   11.9   0.0    1.7  1  PF08755.6  Hemimethylated DNA-binding protein YccV like


Domain annotation for each model (and alignments):
>> PF01092.14  Ribosomal protein S6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.8   1.1e-57   7.2e-54       1     127 []       1     128 [.       1     128 [. 0.98

  Alignments for each domain:
  == domain 1    score: 180.7 bits;  conditional E-value: 1.1e-57
   PF01092.14   1 lklnvsyPatGtqklievddeeklrvfvekrlgeevdg.davGdelkGyvlkiaGGndkqGfPmkqdvltstrvrlllskGhscyrPrrdGerkrksvrGaivdadlsvlalkivkkGekdipgllde 127
                  +kln++ P tG+qkl+evdde+klr++++kr+++ev+g d++Gde+ Gy ++++GGndkqGfPmkq+vl ++rvrlll+kG+scyr rr GerkrksvrG+iv++dl+vl+l++ k Ge +i+gl+d+
  MMETSP0890-20130614|11769_1   1 MKLNIANPLTGQQKLVEVDDERKLRTVMDKRISQEVAGeDLLGDEYTGYIFRVSGGNDKQGFPMKQGVLCNHRVRLLLRKGNSCYRQRRAGERKRKSVRGCIVGHDLAVLNLVVAKTGETQIEGLTDD 128
                  8************************************94589************************************************************************************85 PP

>> PF08755.6  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.14      44      95 ..     136     187 ..      99     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
                  ------EEEEEEE-----EEEEEEGGGEEE---S--TT-HHHHHHHHHHTT- CS
    PF08755.6  44 perkqpfYhllvedkeselvaYvaeenLledeskesikhpeieelfeefdea 95 
                  p+r +   +l++ +ke++++ Yv e++L++++ k+ ik+p+i++l + + ++
  MMETSP0890-20130614|11769_1 136 PKRANKIRKLFALSKEDKPQGYVIERKLEKKNGKTYIKKPKIQRLVTPLMRQ 187
                  556666667888899999************************9998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1161  (0.0849181); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:01.15
# Mc/sec: 512.32
//
Query:       MMETSP0890-20130614|11770_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-11   42.7   0.0    5.5e-11   42.3   0.0    1.1  1  PF00241.15 Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> PF00241.15  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   4.1e-15   5.5e-11       9     126 ..      73     194 ..      66     195 .. 0.91

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 4.1e-15
                  CHCC---.ECEEEEEE-TTSSSEEEEEE.E-S-HCCCCCCTS-TTS-EEEEEEEEEEBS....S-EEEEEEEEEE--TTS-HHHCHHHHHCCHHHHHHH----EEEEES-GG.GGSHHHHCHHH CS
   PF00241.15   9 elkkrkk.kryiifkidknkkkivveqvgetgdsydelveelkerecrYavldveytee....eskkskivfvswcpdgApvkkkmlyASskdalkkslkgikvevqatdas.dlseeelkekl 126
                  +++++++ + + + k++ n k++++ +vg   ++++ +++ l+ +ec+++ ++ +  ++     +++ k+vfv   p  A++ kk+ +A +k a+k+++k+++ +++++d + dlse +l ekl
  MMETSP0890-20130614|11770_1  73 KVLDDEQsETFLVAKYATNGKSLELIAVG--TGGLEAFKDALPTDECSWGGFRCTAVDDrgnlVCRRPKFVFVMSTPAAASIIKKAKMAPHKGAVKEAIKSVHLDITVEDKDtDLSETNLVEKL 194
                  55566666999999**************9..99*********************988889*999*********************************************87559***9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:01.01
# Mc/sec: 557.57
//
Query:       MMETSP0890-20130614|11772_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.6   0.5      0.026   14.3   0.4    1.4  1  PF03938.9 Outer membrane protein (OmpH-like)
       0.15   11.7   4.4       0.27   10.9   3.0    1.4  1  PF14235.1 Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   3.7e-06     0.026      36     101 ..      40     109 ..       6     174 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.7e-06
    PF03938.9  36 elqaklqeeakekqqelqakkkel.qkeqknlqsera......qlsaeaekakeeelqakeqelqayaqqlqa 101
                  +l+ kl+ +    +++ ++ k+e+ +++q+ l++ r+         ++++++++e ++++ +el++ +qq+  
  MMETSP0890-20130614|11772_1  40 DLMDKLEGKD---KDKNDEWKEEMyRNQQEILNRRRKsggfidEAMEKEIQQRRESYAKEGAELKKIQQQAGS 109
                  4444444444...444455555554556666666555667777666666777777777777777777777763 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.0     4e-05      0.27      49     116 ..      56     128 ..      53     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4e-05
    PF14235.1  49 ikqtlaelaaelleleaks....aaelkkkiekykkekkrikseakeleakakeaeeesdealhkhh.rfalA 116
                   k++++++++e+l+  +ks    +++++k+i++ ++  ++  +e k+++++a +++  sd +++++  +f+ A
  MMETSP0890-20130614|11772_1  56 WKEEMYRNQQEILNRRRKSggfiDEAMEKEIQQRRESYAKEGAELKKIQQQAGSKDILSDWKKARDAgKFKTA 128
                  599************9999*********************************999988887776653156555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1053  (0.0770187); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.57
# Mc/sec: 789.15
//
Query:       MMETSP0890-20130614|11771_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-46  154.6  18.7      4e-12   45.8   1.2    4.5  4  PF00249.26 Myb-like DNA-binding domain
    2.6e-39  133.0   7.3    9.6e-14   51.1   0.1    4.5  4  PF13921.1  Myb-like DNA-binding domain
     0.0018   17.9   0.0        6.4    6.4   0.0    3.9  3  PF09111.5  SLIDE
  ------ inclusion threshold ------
      0.045   13.4   2.0        3.3    7.4   0.0    4.1  3  PF08914.6  Rap1 Myb domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.5   2.5e-13   8.4e-10       1      48 []      93     142 ..      93     142 .. 0.95
   2 !   45.8   1.2   1.2e-15     4e-12       1      48 []     169     218 ..     169     218 .. 0.96
   3 !   39.3   0.1   1.3e-13   4.4e-10       1      48 []     224     269 ..     224     269 .. 0.96
   4 !   41.5   0.3   2.6e-14     9e-11       1      45 [.     275     317 ..     275     319 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.5e-13
                  TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT..TTS-HHHHHHHHHHHT CS
   PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                  + rW+++Ede+l  avk  G ++WktIa+       +++ qc +rwqk+l
  MMETSP0890-20130614|11771_1  93 KRRWSKQEDEKLCAAVKGVGLHDWKTIAEVYMagHELSDAQCMHRWQKVL 142
                  579**************************9888989***********986 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 1.2e-15
                  TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT..TTS-HHHHHHHHHHHT CS
   PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                  + rWT++Ede+l +avk  G+++Wk Ia+      gR++ qc +rwqk+l
  MMETSP0890-20130614|11771_1 169 KRRWTKQEDEKLCNAVKAVGTENWKEIAEVYLagHGRSEAQCLHRWQKVL 218
                  579***************************999**************986 PP

  == domain 3    score: 39.3 bits;  conditional E-value: 1.3e-13
                  TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHHT CS
   PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                  +g++T+eEd++++++ +q G   W  Ia +++ gR +kqc++rw ++l
  MMETSP0890-20130614|11771_1 224 KGAFTEEEDKIIIECMQQGGLT-WMQIADRIP-GRIGKQCRERWTNHL 269
                  799***************9987.*********.************996 PP

  == domain 4    score: 41.5 bits;  conditional E-value: 2.6e-14
                  TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHH CS
   PF00249.26   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                  +g W+ +Ed +l++a +++G+  W +Ia++++ gR ++ +k+rw+
  MMETSP0890-20130614|11771_1 275 KGGWSHDEDTILAEAQQRWGNA-WTKIAKLLP-GRAENAVKNRWN 317
                  688*******************.*********.***********9 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.5e-10   1.2e-06       1      58 [.      96     157 ..      96     159 .. 0.90
   2 !   38.9   0.2   1.8e-13   6.3e-10       1      56 [.     172     231 ..     172     231 .. 0.94
   3 !   51.1   0.1   2.8e-17   9.6e-14       1      59 [.     227     285 ..     227     286 .. 0.96
   4 !   31.7   0.3   3.2e-11   1.1e-07       1      46 [.     278     323 ..     278     337 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.5e-10
    PF13921.1   1 WtdeEdeiLlklveeygn.dWseIaeel.g..rRtplacqdrwknkLrpkisrapwtkeedq 58 
                  W+++Ede+L   v+  g  dW++Iae + +    +  +c+ rw++ Lrp + ++++ ++ed+
  MMETSP0890-20130614|11771_1  96 WSKQEDEKLCAAVKGVGLhDWKTIAEVYmAghELSDAQCMHRWQKVLRPGLVKGAFCEKEDK 157
                  **********999999955********755777788**************999999999986 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 1.8e-13
    PF13921.1   1 WtdeEdeiLlklveeygn.dWseIaeel.g..rRtplacqdrwknkLrpkisrapwtkee 56 
                  Wt++Ede+L + v++ g  +W+eIae + +   R++ +c  rw++ Lr+ + ++++t+ee
  MMETSP0890-20130614|11771_1 172 WTKQEDEKLCNAVKAVGTeNWKEIAEVYlAghGRSEAQCLHRWQKVLRAGLVKGAFTEEE 231
                  ****************9659*******546788*************************98 PP

  == domain 3    score: 51.1 bits;  conditional E-value: 2.8e-17
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeel.grRtplacqdrwknkLrpkisrapwtkeedqk 59 
                  +t+eEd+i+++ +++ g +W +Ia ++ g R  ++c++rw+n+L+p+++++ w+ +ed  
  MMETSP0890-20130614|11771_1 227 FTEEEDKIIIECMQQGGLTWMQIADRIpG-RIGKQCRERWTNHLDPNLKKGGWSHDEDTI 285
                  7**************************88.**************************9976 PP

  == domain 4    score: 31.7 bits;  conditional E-value: 3.2e-11
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeel.grRtplacqdrwknkLrpk 46 
                  W+++Ed iL++  ++ gn W++Ia+ l g R ++a+++rw++  r k
  MMETSP0890-20130614|11771_1 278 WSHDEDTILAEAQQRWGNAWTKIAKLLpG-RAENAVKNRWNSAFRRK 323
                  ***************************88.***********966544 PP

>> PF09111.5  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.044   1.5e+02      49      80 ..      93     121 ..      77     128 .. 0.85
   2 ?    4.0   0.0      0.01        35      49      80 ..     169     197 ..     163     201 .. 0.90
   3 !    6.4   0.0    0.0019       6.4      49      82 ..     224     253 ..     219     262 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.044
    PF09111.5  49 kktyseeeDrflllmvyklGldkeglyekike 80 
                  k++ s++eD  l   v+ +Gl   + +++i e
  MMETSP0890-20130614|11771_1  93 KRRWSKQEDEKLCAAVKGVGL---HDWKTIAE 121
                  8999*****************...77777766 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.01
    PF09111.5  49 kktyseeeDrflllmvyklGldkeglyekike 80 
                  k++ +++eD  l + v+ +G    +++++i e
  MMETSP0890-20130614|11771_1 169 KRRWTKQEDEKLCNAVKAVGT---ENWKEIAE 197
                  7899*****************...99999876 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0019
    PF09111.5  49 kktyseeeDrflllmvyklGldkeglyekikeei 82 
                  k  ++eeeD+ ++ ++++ Gl    ++ +i + i
  MMETSP0890-20130614|11771_1 224 KGAFTEEEDKIIIECMQQGGL----TWMQIADRI 253
                  5689*****************....555555544 PP

>> PF08914.6  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   4.9e+03      24      42 ..     105     125 ..      96     140 .. 0.56
   2 ?    2.2   0.1     0.042   1.4e+02       5      44 ..     172     203 ..     148     219 .. 0.68
   3 ?    7.4   0.0   0.00095       3.3       4      60 ..     226     272 ..     224     277 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.4
    PF08914.6  24 pssvtGnal..wkelekkslt 42 
                   + v+G  l  wk +++ ++ 
  MMETSP0890-20130614|11771_1 105 CAAVKGVGLhdWKTIAEVYMA 125
                  444554444335555555544 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.042
    PF08914.6   5 yteeeDaailkyvkekerspssvtGnalwkelekksltkh 44 
                  +t++eD  + + v        ++ G++ wke+++ +l  h
  MMETSP0890-20130614|11771_1 172 WTKQEDEKLCNAV--------KAVGTENWKEIAEVYLAGH 203
                  4555555555555........4456677777777666665 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00095
    PF08914.6   4 ayteeeDaailkyvkekerspssvtGnalwkelekksltkhsWQslkdRYlkhlrgq 60 
                  a+teeeD++i++ ++         +G   w++++ + +  +     ++R+  hl+  
  MMETSP0890-20130614|11771_1 226 AFTEEEDKIIIECMQ---------QGGLTWMQIADRIP-GRIGKQCRERWTNHLDPN 272
                  8***********993.........46677777777777.555555677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.09u 0.36s 00:00:01.45 Elapsed: 00:00:01.25
# Mc/sec: 1409.06
//
Query:       MMETSP0890-20130614|11766_1  [L=932]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-105  352.4   0.9   3.2e-105  351.6   0.2    1.7  2  PF00465.14 Iron-containing alcohol dehydrogenase
      4e-25   87.9   0.4    1.5e-23   82.7   0.3    2.0  2  PF00171.17 Aldehyde dehydrogenase family
    1.2e-19   70.5   1.1      6e-11   41.9   1.3    2.4  2  PF13685.1  Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
       0.11   12.6   0.1        0.3   11.2   0.1    1.7  1  PF03726.9  Polyribonucleotide nucleotidyltransferase, RNA binding domain


Domain annotation for each model (and alignments):
>> PF00465.14  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.27   9.2e+02     318     353 ..      30      64 ..      10      76 .. 0.68
   2 !  351.6   0.2  9.3e-109  3.2e-105       1     362 [.     500     888 ..     500     892 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.27
                  HHHHHHHTT---STTT---T.THHHHH----TT-T.. CS
   PF00465.14 318 lrellkelglptsLkdlgvt.eedldelaeaalkdrr 353
                  lr+ l+++ +    +d+g++ eedlde+ ++++++++
  MMETSP0890-20130614|11766_1  30 LRHRLQSVRMM--SNDYGIQgEEDLDEVMAKVVSAQQ 64 
                  44444444444..48999997899**99999998844 PP

  == domain 2    score: 351.6 bits;  conditional E-value: 9.3e-109
                  -SEEEE---GGGGHHHHHTTT.SEEEEEEEHHHHHTHHHHHHH...HC---EEEEEE.E-----HHHHHHHHTTS-T.T--EEE------HHHHHHHHHHHTT..............................--........BEE--SS-S-S-TT-SEEEEE-----EE.EEEE-S.--SEEE--HHHHHHS-HHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHH.HH----HHHHHH.HHHHTT....-----------HHHHHH---G-GGGS----TTT--HHHHH............................................HTTHHHHHHHHHHHHTT---STTT---TT....HHHHH----TT-T..TSGSSS--- CS
   PF00465.14   1 Ptkivfgegaleelgeelkkl.gkvlivtdkslkklglldkvlesLeeagievtvfdgvepeptleeveeaaalareekadvivAvGGGsviDtAKaiallltnpge.lldye..........gkakkkkkpalp........liaiPTtaGtGsevtplavitdeetkrklslaspkllPdlaivDpeltltlPkrvtaatglDalthaiEayvskkanplsdalaeeairliaenlpravadpedleareqmllastlAGlafsnaglgaaHalahalgglfgipHGeavaillpavlrfna...............eaaperyarlaralgvdsegsdeealaeeliealrellkelglptsLkdlgvte....edldelaeaalkdrrletnprelt 362
                  P++i+f +g ++e  ++l+   ++vli+td+ +k+lg++d+v+e++     +v +f+gv pep+ + +++++++++++k+d+++A+GGGs++D+AK+++ll++ p+  ++d++          ++         p        li iPTt+GtG+e+tp+avit  + + k+++ s++l+Pd+aivDpe+ +++Pk +ta tg D++tha+E+yvs  a+++++ l+ +a++l+ ++l +av++p+d+eare m+ as +AG+af+na lg+ H++ahalg++f+ipHG+++a+++ +v+ +na               ++a+++ya+la++lg++ +g+++e+   +l+e+l++l  ++g+p s++d g+++    +++++lae++++d+++ +npr + 
  MMETSP0890-20130614|11766_1 500 PPTIYFKRGIIHEALKDLQGVaQRVLIITDPTMKELGIADQVEEAV--PFAKVSIFEGVLPEPSFACIRDGIDAMERFKPDTVIALGGGSPLDAAKVMRLLYECPEVkVTDLIarfldirkriNPF--------PllgtkikkLIEIPTTSGTGAEMTPFAVIT-GDDGYKYPVCSYALTPDMAIVDPEFAAGMPKTLTAHTGYDVMTHAVESYVSVMATDYTQCLSSKAVELVNKHLANAVNNPTDMEAREGMHNASAIAGIAFANAFLGINHSMAHALGARFHIPHGLCNALVMSHVILYNAstnptkmtafpqykyPQAKKQYAQLADVLGLAPGGTEDEK-LIALVERLEQLKVQCGIPLSIADCGIDRsefmAAVPALAEHSFDDQCTGANPRYPL 888
                  789****************9966*********************99..7778999************************************************88445666665533333444444........355555556*********************.7889*****************************************************************************************************************************************************999999**********9965555554.789************************8788899*************999**9875 PP

>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.3   4.4e-27   1.5e-23      27     295 ..      48     315 ..      42     353 .. 0.88
   2 !    3.0   0.0    0.0069        24     369     429 ..     379     445 ..     362     451 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 4.4e-27
                  -HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHH.HHHHHHHHHHHHHHHHHHC-CCEEEECTTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHH.H...TS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT CS
   PF00171.17  27 taedvdaavaaAkaafkawaklpaeeRaeilrkaadlleerrdelaelevletGkplaeara.evaeaidvlryyagaaeklegevlpssegkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaellee.a...glPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaakk 295
                   +ed+d+++a+  +a+++w k + ++  ei++ +a +  ++r  la+l v++tGk + e +  + + a +++    + ++++  +v++ +  +  +   eP+G + a +P   P + +  k ++ l + N++v+ p + ++ ++ + a+l+ + a   g P+  ++++    + +   l+ hp+++    tG+ +v +  +++ +    + +    G++p++V e +Dl+ a ++i  + ++ +G +C a + ++V +++y++f + l+++ + 
  MMETSP0890-20130614|11766_1  48 GEEDLDEVMAKVVSAQQEWLKFDQKKVDEIFHSVASAASRQRVPLAKLAVANTGKGIIEDKViKNHFASEFVYNKYKNIKTV--DVVERDVARGYTKIAEPVGPICAFVPITNPTATVLFKSLISLKTRNCIVFSPHPAASECSNAAAKLCIDeAikaGAPEWCISYLDKPTRALSTKLLHHPEINFALATGGPSVVHACYESGT----PAIGVGAGNAPALVDETCDLEMACSSIFLSKTFDNGMICAAEQAVVVVDQVYEQFKQLLTQRGAY 315
                  689********************************************************99955555555554444445554..5556654555566679************************************9999888877777654324455*************************************9999999754....8999999**************************************************99998655 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0069
                  ---SSEEEEEEESSHHHHHHHHHSSSB....---EEEE-S..BHHHHHHHHHHS----EEESS-TT- CS
   PF00171.17 369 EiFGPVlsvikfkdeeeaielaNdtey....GLaaavfte..dleraervaerleaGnvwiNdsstg 429
                  E   PV+++ +++d+e+ +++     y    G ++a++t+  +l+r++r+ +++ +  v++N++st+
  MMETSP0890-20130614|11766_1 379 EKLSPVMALYRARDFEHGVDISKRLAYhggqGHSSAIYTNpnNLDRVNRFEHEMPTYHVIMNSPSTF 445
                  6668**************99988888777779*******644899*****************99876 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.1e-09   7.2e-06       5      95 ..     508     596 ..     504     607 .. 0.82
   2 !   41.9   1.3   1.8e-14     6e-11     100     246 ..     631     777 ..     627     779 .. 0.96

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.1e-09
    PF13685.1   5 galeelgeilkklklkkvlvvadentyka.agekveeslkeagvevevleeleeeadleaveklvealrekdadlvvavGsGtinDlaKyvs 95 
                  g++ e+ + l+   +++vl+++d +++++ ++++vee++  a  +v ++e + +e+++  +++ ++a++  + d+v+a+G+G+  D+aK++ 
  MMETSP0890-20130614|11766_1 508 GIIHEALKDLQG-VAQRVLIITDPTMKELgIADQVEEAVPFA--KVSIFEGVLPEPSFACIRDGIDAMERFKPDTVIALGGGSPLDAAKVMR 596
                  555555555543.368************99999*****9877..5566788899**************999******************986 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 1.8e-14
    PF13685.1 100 kpyisvpTaaSmDGyaspgasltvdngkkktls.paklPiaiiaDldiikkAPkrliasGfGDllgkitaladwklaeevaeeiaekaaelvqealeklledekdeealkellealalsglamsrpaSgaeHllShalemeakpllHG 246
                  k++i +pT+    + + p a +t d+g k+ +   a +P + i+D ++ +  Pk l+a    D++   +  +   +a ++++ ++ ka+elv+++l+++++++ d ea + + +a+a++g+a+ ++  g  H ++hal +++ +  HG
  MMETSP0890-20130614|11766_1 631 KKLIEIPTTSGTGAEMTPFAVITGDDGYKYPVCsYALTPDMAIVDPEFAAGMPKTLTAHTGYDVMTHAVESYVSVMATDYTQCLSSKAVELVNKHLANAVNNPTDMEAREGMHNASAIAGIAFANAFLGINHSMAHALGARF-HIPHG 777
                  6789999999999999**************99999**********************98888********************************************************************************.999*9 PP

>> PF03726.9  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   8.8e-05       0.3      27      72 ..      49      90 ..      46      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.8e-05
    PF03726.9 27 yaaldeikakvveafaaeleeedeedekeikeifkalekkvvReri 72
                 +++lde+ akvv a ++ l    + d+k+++eif+++ +   R+r+
  MMETSP0890-20130614|11766_1 49 EEDLDEVMAKVVSAQQEWL----KFDQKKVDEIFHSVASAASRQRV 90
                 5789********9999666....********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.31u 0.37s 00:00:01.68 Elapsed: 00:00:00.96
# Mc/sec: 2326.46
//
Query:       MMETSP0890-20130614|11774_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-13   50.6   3.5    3.9e-13   49.1   2.4    1.6  1  PF00149.23 Calcineurin-like phosphoesterase
    0.00022   21.0   1.9    0.00098   18.8   1.2    2.0  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain
  ------ inclusion threshold ------
       0.08   12.6   0.0       0.25   11.1   0.0    1.8  1  PF08796.5  Protein of unknown function (DUF1797)


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   2.4   8.6e-17   3.9e-13      30     200 ..       8     232 ..       3     233 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 8.6e-17
                  TTTSEEEEE-TTSSGHHCHHHHHHHHH....HCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEES...............................................T.....EEEEETTEEEEEEETTSHCSTCH.HHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH..SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
   PF00149.23  30 ekpdlvlflGDlvdrgdwssetlalld....ylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeel...............................................s.....itllttsgelgglsglypllgge.iqeeqleeflalplralvdgkilltHgplsssggssddigggelfgpdalekllekygvdlvlrGHeHv 200
                   ++ +vl  GD+ +    ss    ++           +l +p+++  GNH++++  sa  ++ e+++++  ++ +++e+  +                                               +     + +++   + +  + l p+l ++ +q  q e +l + + ++  ++i+ +H p +ss+  ++   g + + +++l +lleky+v ++++GH+Hv
  MMETSP0890-20130614|11774_1   8 YNAEFVLGIGDNMYDTGVSSVDDPQFKskfeDTFTADSLQVPWYIASGNHDYYGNISAQVAYTEKSDRWTFPDLYYKEEIKKddifltliaidtwrlnggdtyvafdpkhnrghirdlerlqrdhengiVtpgtyESITMNYQPAHLADFLVPELADDpDQLSQIESWLKEANDNNSTWIIVQGHFPCYSSTTDEH---GDTKSLIKNLVPLLEKYNVSVYFSGHDHV 232
                  56778888899999999999888888898888999999******************************************************************9999999999998888887777765156788777777777777777777766550566678899999999999*************998876...67**************************7 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.2   2.1e-07   0.00098      25     144 ..       9     256 ..       1     269 [. 0.57

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.1e-07
    PF12850.2  25 evdlilhaGD........lvep........eevvelledipvlavrGnhDeae.lpkelavel.....................................................................llaaaaleiegdrvllvhgtpls...............................................................vqsseee.....laellkeagadlvflGHtHkpkvekrggtlvvnpGsvgepregd 144
                  +++++l  GD        +v+         ++++++  ++p ++  GnhD+   + +++a +                                                                      +                                                                                           +     l  ll++++++++f+GH H+ +  ++ g+ ++  G+ +++++g 
  MMETSP0890-20130614|11774_1   9 NAEFVLGIGDnmydtgvsSVDDpqfkskfeDTFTADSLQVPWYIASGNHDYYGnISAQVAYTEksdrwtfpdlyykeeikkddifltliaidtwrlnggdtyvafdpkhnrghirdlerlqrdhengivtpgT---------------------YesitmnyqpahladflvpeladdpdqlsqieswlkeandnnstwiivqghfpcyssttdehgdT-----KsliknLVPLLEKYNVSVYFSGHDHVLQHISKSGVNFLGSGAGARKHDGI 256
                  58999999997666655533323333333366666667789********943333333322224566666444444444444555555555555555555555555555555555555555555555555550.....................04444444444444444444444444444444444444444444444444444444444333322.....13333399*********************999999999888888877765 PP

>> PF08796.5  Protein of unknown function (DUF1797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.4e-05      0.25      21      62 ..      57     100 ..      53     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.4e-05
    PF08796.5  21 FekeGeevaeVsydektetfeleevkdkekfqFDni..DlvAie 62 
                   +  G+  a+V+y ek++ +++ ++  ke+ + D+i   l+Ai+
  MMETSP0890-20130614|11774_1  57 HDYYGNISAQVAYTEKSDRWTFPDLYYKEEIKKDDIflTLIAID 100
                  56789999***************************933346665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 1090.88
//
Query:       MMETSP0890-20130614|11775_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.022   14.3   0.0    1.5  1  PF12695.2 Alpha/beta hydrolase family
      0.018   13.8   0.0      0.028   13.2   0.0    1.2  1  PF12740.2 Chlorophyllase enzyme
      0.092   11.4   0.0       0.15   10.7   0.0    1.2  1  PF07224.6 Chlorophyllase


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.9e-06     0.022      35      92 ..     182     250 ..     129     434 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.9e-06
    PF12695.2  35 pghgasegaa.......aakrvlaadll..dleriilvGhSlGGgvalelag....rddrvkglvllapfp 92 
                   ++ + e+++        +++++ +++l  +++r+++ Gh  GG++a++la+        v++lv++++ p
  MMETSP0890-20130614|11775_1 182 DTYEDFEDSPtfqasltFVQEFI-EQKLnnGWQRLVMSGHGRGGRLAAALASrltdT-LYVSKLVVFNTCP 250
                  44444444442333333455555.444456**********************66440.4555555555532 PP

>> PF12740.2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.1e-06     0.028      79     114 ..     201     236 ..     193     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.1e-06
    PF12740.2  79 eevlpenvrpdlsklalagHsrGgkvafalalglan 114
                  +e++ ++++   ++l ++gH rGg+ a+ala +l++
  MMETSP0890-20130614|11775_1 201 QEFIEQKLNNGWQRLVMSGHGRGGRLAAALASRLTD 236
                  67788999999********************99855 PP

>> PF07224.6  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.2e-05      0.15     107     151 ..     200     244 ..     193     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.2e-05
    PF07224.6 107 lkavlptsveanlsklalvGhsrGGktafalalgysseltfsali 151
                  ++++++++ +   ++l ++Gh rGG+ a ala + +  l +s l+
  MMETSP0890-20130614|11775_1 200 VQEFIEQKLNNGWQRLVMSGHGRGGRLAAALASRLTDTLYVSKLV 244
                  5788889999999*******************9999888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.91
# Mc/sec: 1240.31
//
Query:       MMETSP0890-20130614|11785_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-17   62.0   0.0    1.2e-16   61.0   0.0    1.6  1  PF00005.22 ABC transporter
    4.3e-08   33.3   0.1     0.0032   17.3   0.0    2.6  3  PF13304.1  AAA domain
    3.9e-05   23.0   0.1    5.7e-05   22.4   0.1    1.3  1  PF13481.1  AAA domain
    0.00097   18.5   0.0     0.0017   17.7   0.0    1.5  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
     0.0014   18.9   1.0     0.0024   18.1   0.7    1.4  1  PF13191.1  AAA ATPase domain
     0.0019   17.3   0.1      0.016   14.3   0.1    2.0  1  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0019   17.5   0.3     0.0038   16.6   0.2    1.4  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.01   14.5   0.1      0.018   13.6   0.1    1.4  1  PF03308.11 ArgK protein
      0.011   15.4   0.0      0.019   14.7   0.0    1.5  1  PF13671.1  AAA domain
      0.016   15.2   0.1      0.038   13.9   0.0    1.7  1  PF13401.1  AAA domain
      0.019   15.1   0.0      0.034   14.3   0.0    1.4  1  PF13238.1  AAA domain
       0.02   13.9   0.1      0.033   13.2   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
       0.04   13.5   0.0        0.1   12.2   0.0    1.7  1  PF13245.1  Part of AAA domain
       0.04   13.3   0.1       0.08   12.4   0.1    1.5  1  PF05729.7  NACHT domain
      0.048   12.7   0.3       0.09   11.8   0.2    1.4  1  PF12846.2  AAA-like domain
       0.09   13.4   0.0       0.15   12.7   0.0    1.5  1  PF13207.1  AAA domain
        0.1   12.6   0.1        0.3   11.1   0.0    2.0  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
       0.12   11.0   0.0       0.17   10.5   0.0    1.2  1  PF03969.11 AFG1-like ATPase


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.6e-19   1.2e-16       1     118 []      85     212 ..      85     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 1.6e-19
                  HHHHHHHTTSS---......---EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--.-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxx......xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkpt......egeievdn.drkdlesdkleklrigyipqdpllfpeltvrenldmakeekk.tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  +TLl +l+g ++ +       g+i v++ +++d   +k+e +r++y++q+  l+   tvre+l+ a   +    +r++++++++gl++++++       +++SgGqk+r+++A +l+++p+l+lLDEPt+
  MMETSP0890-20130614|11785_1  85 TTLLDTLAGRVDGSkrgrnlRGSILVNGmSVQDA--KKREGMRLAYVQQEDALVGVITVRETLQVAAALAAePSDRVDDLIREFGLESAANTivgtIFQKGISGGQKRRLSIAVELISRPRLVLLDEPTS 212
                  79*********96666777789999994355333..5567777********************998877655889*************9999898888899***************************96 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   8.1e-05     0.062       5      23 ..      77      95 ..      73     124 .. 0.74
   2 !   17.3   0.0   4.2e-06    0.0032     230     272 ..     177     216 ..     138     232 .. 0.77
   3 ?   -1.7   0.0       2.6     2e+03      86     146 ..     268     328 ..     259     343 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.1e-05
    PF13304.1  5 iGpNgsGKSnlLkaldflf 23
                  Gp gsGK++lL+ l++  
  MMETSP0890-20130614|11785_1 77 LGPSGSGKTTLLDTLAGRV 95
                 7**************7644 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 4.2e-06
    PF13304.1 230 gelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHP 272
                  g +     S G+kr l+++  l+s++   +++l+DEp +gL+ 
  MMETSP0890-20130614|11785_1 177 GTIFQKGISGGQKRRLSIAVELISRP---RLVLLDEPTSGLDS 216
                  44444455******************...************86 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.6
    PF13304.1  86 wlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltd 146
                  +l ++ + ++eli + +++ ++ + +++  +  + +i++ ++ + +++   + ++    ++
  MMETSP0890-20130614|11785_1 268 KLCYFGPAQQELISFLNKIHYSVPQFSNIADHVLALINEDFPGHADVQQIVNEFLNLGTKP 328
                  5667777788888888888888888888888888888887777777776666666555555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   7.4e-08   5.7e-05      19      98 ..      58     157 ..      41     233 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.4e-08
    PF13481.1  19 pppldwlvkgllprgsltllaGapgtGKStlalqlaaava...tGepflg...........pvvpepgrVlylsaEds...eaelrrrlsailaal....d 98 
                   + ld ++ g+ + g l+   G++g+GK+tl+  la++v    +G+++ g            ++ e  r  y++ Ed+     ++r+ l+ ++a +    d
  MMETSP0890-20130614|11785_1  58 KTILDKVW-GHAQSGRLLGMLGPSGSGKTTLLDTLAGRVDgskRGRNLRGsilvngmsvqdAKKREGMRLAYVQQEDAlvgVITVRETLQVAAALAaepsD 157
                  45556666.6778999***************************777777777778887774445599**********976655677777765544422331 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.2e-06    0.0017       4     101 ..      75     174 ..      72     241 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.2e-06
                  EEE-------HHHHHHHHC.....HS---S-EEEEES-----HCCCCCHHT-S-.EEEE----ECC-TTS-HHHHHCCCHHHCH-T-SEEEEE----SGGGGH CS
   PF02492.14   4 vltGflGsGKTtLleklle.....knreglkiaVivndfgetkiDaellretgveivelnnGciCctlredllmelealeelkeerldvlliEttGlaepapl 101
                   + G+ GsGKTtLl +l       k+ ++l+  ++vn ++    Da+  +      v+ ++  +      + l++++al++++++r+d l+ E  Gl ++a  
  MMETSP0890-20130614|11785_1  75 GMLGPSGSGKTTLLDTLAGrvdgsKRGRNLRGSILVNGMS--VQDAKKREGMRLAYVQQEDALVGVITVRETLQVAAALAAEPSDRVDDLIRE-FGLESAANT 174
                  678999***********999999877788999*******9..567776666666688888888877767788888888888888999988554.454444444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.7   3.1e-06    0.0024      13     101 ..      62     150 ..      56     235 .. 0.57

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.1e-06
    PF13191.1  13 laalrrvsegsplllvtGpsGiGKSsLlrelakpille.rlrfaagkfdqllrnlpysaiiqa.......lrellrqlltelaaelggwreallaal 101
                   +++  +++g+ ll  +GpsG+GK++Ll++la ++  + r+r ++g +   + ++       +       +r ++ q  ++l+  +  +++ + aa+
  MMETSP0890-20130614|11785_1  62 DKVWGHAQSGR-LLGMLGPSGSGKTTLLDTLAGRVDGSkRGRNLRGSILVNGMSV-------QdakkregMRLAYVQQEDALVGVITVRETLQVAAA 150
                  56667677777.77789*************5555443334444444444444442.......12333333333333333333333333333333333 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1     2e-05     0.016      27     187 ..      74     230 ..      55     249 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2e-05
                  EEE--------HHHHHHHH.HH------.-------TTSS--..--------EEEEEEEEE----E.........EEEEEEEE----EEEEE--..-EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH- CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  27 taivGpNGSGKsnvldAil.FvLGeksakklrseklsdlihk..skskakvksaeveitfdnedke..lvieeeevsitrrvkrkgeseyking..kevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeks 187
                    ++Gp GSGK+ +ld +   v G k  ++lr + l + ++    k+++ +  a+v+     ed+   + + +e++++   +  + +   ++++  +e   +  a+ +    i ++ +SgG+k  +++    A++ +++  l+llDe  + LD +   +v + lk+  
  MMETSP0890-20130614|11785_1  74 LGMLGPSGSGKTTLLDTLAgRVDGSKRGRNLRGSILVNGMSVqdAKKREGMRLAYVQQ----EDALvgVITVRETLQVAAALAAEPS--DRVDDliREFGLESAANTIV-GTIFQKGISGGQKRRLSI----AVELISRPRLVLLDEPTSGLDSSSSLAVTSQLKSLA 230
                  5679**************7346688888888888776655442344455555555554....5555322222222333333333333..33443113333344444444.34666689*****96555....5677888889***********999999999998654 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2     5e-06    0.0038      19      43 ..      67      91 ..      58      93 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5e-06
    PF13555.1 19 idpkgkntlltGasGsGKSTllDAi 43
                  +++g+   + G+sGsGK+TllD +
  MMETSP0890-20130614|11785_1 67 HAQSGRLLGMLGPSGSGKTTLLDTL 91
                 55666666789************76 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   2.4e-05     0.018      13      52 ..      55      94 ..      47     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHGGG----EEE--B-------HHHHHH---H CS
   PF03308.11 13 peakellrkilpkaGralvvGltGvPGaGkstlveklike 52
                 + +k++l+k+  +a   + +G+ G  G+Gk tl++ l+ +
  MMETSP0890-20130614|11785_1 55 DGSKTILDKVWGHAQSGRLLGMLGPSGSGKTTLLDTLAGR 94
                 46899******************************99755 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.5e-05     0.019       3      22 ..      75      94 ..      73     167 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.5e-05
    PF13671.1  3 llvGlpGsGKstlaerllkk 22
                  + G++GsGK+tl++ l+ +
  MMETSP0890-20130614|11785_1 75 GMLGPSGSGKTTLLDTLAGR 94
                 599***********999855 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     5e-05     0.038       9      68 ..      76     172 ..      68     247 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-05
    PF13401.1   9 vtGesGvGKTtllrrlarqldeeaeaae.....................................karvvfveapastspkellqkllsalglpakg 68 
                    G+sG+GKTtll  la + d  +  ++                                      ++++ v a+  ++p++   +l +++gl+  +
  MMETSP0890-20130614|11785_1  76 MLGPSGSGKTTLLDTLAGRVDGSKRGRNlrgsilvngmsvqdakkregmrlayvqqedalvgvitVRETLQVAAALAAEPSDRVDDLIREFGLESAA 172
                  57**************998776555555888888888888888888877777777777777777666666777777777777777777777777776 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.5e-05     0.034       5      58 ..      78     133 ..      76     173 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.5e-05
    PF13238.1   5 GtpGvGKtTlakeLaerl.....gdvlrdlakengleeevddkidtkeskeldedklde 58 
                  G++G+GKtTl+  La r      g +lr  +  ng++  + +k   +e  +l + +++ 
  MMETSP0890-20130614|11785_1  78 GPSGSGKTTLLDTLAGRVdgskrGRNLRGSILVNGMSVQDAKK---REGMRLAYVQQED 133
                  9*************77766666677777777766666666666...5555555555444 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.4e-05     0.033      24      59 ..      59      95 ..      43     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.4e-05
                 TT-HHHHHHCTT.SBEEEE-------HHHHHHH---- CS
   PF03193.11 24 egleelaellkd.ktsvlvGqSGvGKSsLinallpel 59
                 + l+++  + ++ ++  ++G+SG GK++L+++l+++ 
  MMETSP0890-20130614|11785_1 59 TILDKVWGHAQSgRLLGMLGPSGSGKTTLLDTLAGRV 95
                 555555555555588889***************9886 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013       0.1      10      47 ..      71     110 ..      64     136 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
    PF13245.1  10 npllvvtGgPGtGKTttlaaiiaall..aarekp.grsvll 47 
                   +ll   G+ G+GKT tl++  a ++   +r  + + s+l+
  MMETSP0890-20130614|11785_1  71 GRLLGMLGPSGSGKT-TLLDTLAGRVdgSKRGRNlRGSILV 110
                  5666668********.**99999999774455555556655 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00011      0.08       3      24 ..      74      95 ..      72     130 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
    PF05729.7  3 vilqGeaGsGKTtLlqklasaw 24
                 + + G++GsGKTtLl  la   
  MMETSP0890-20130614|11785_1 74 LGMLGPSGSGKTTLLDTLAGRV 95
                 5678************998665 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00012      0.09       6      27 ..      76      97 ..      72     110 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
    PF12846.2  6 ilGppGsGKSvllkklvlqlla 27
                 +lGp+GsGK++ll +l+ ++  
  MMETSP0890-20130614|11785_1 76 MLGPSGSGKTTLLDTLAGRVDG 97
                 69**************777654 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.15       6      22 ..      78      94 ..      73     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00019
                 --TT---HHHHHHHHHH CS
    PF13207.1  6 GppGsGKsTlakeLaer 22
                 Gp+GsGK+Tl   La r
  MMETSP0890-20130614|11785_1 78 GPSGSGKTTLLDTLAGR 94
                 **********9999876 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039       0.3       3      44 ..      76     120 ..      74     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00039
                  EE-------HHHHHHHHHHCT..HEEEEEECCSSS.SST-HHHHH CS
   PF00004.24   3 lyGppGtGKTllakavakelg..vefleisgsell.skyvgesek 44 
                  + Gp G GKT+l   +a  ++   +  ++ gs l+  + v++++k
  MMETSP0890-20130614|11785_1  76 MLGPSGSGKTTLLDTLAGRVDgsKRGRNLRGSILVnGMSVQDAKK 120
                  57****************984335556666666663333333333 PP

>> PF03969.11  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022      0.17      47      92 ..      59     101 ..      30     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00022
   PF03969.11  47 aalgklfgrkrsaepvrglYlwGgvGrGKtyLldlffeslpvekkr 92 
                  + l k++g   +a+ +r l + G+ G GKt Lld+    +++ k+ 
  MMETSP0890-20130614|11785_1  59 TILDKVWG---HAQSGRLLGMLGPSGSGKTTLLDTLAGRVDGSKRG 101
                  45566666...67999******************988877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.69
# Mc/sec: 1219.02
//
Query:       MMETSP0890-20130614|11786_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.6e-104  346.7  14.9   1.1e-103  346.2  10.3    1.2  1  PF01384.15 Phosphate transporter family
  ------ inclusion threshold ------
       0.39   10.6   4.6        1.5    8.8   0.5    3.0  2  PF13063.1  Protein of unknown function (DUF3925)
        1.3    8.5   9.5        6.7    6.2   3.3    3.6  2  PF11234.3  Protein of unknown function (DUF3036)


Domain annotation for each model (and alignments):
>> PF01384.15  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.2  10.3  2.4e-107  1.1e-103       1     325 [.      52     544 ..      52     545 .. 0.97

  Alignments for each domain:
  == domain 1    score: 346.2 bits;  conditional E-value: 2.4e-107
   PF01384.15   1 iGanDvanavatavgskaltlkqAvilaaifeflGalllggeVaktirkgivdeslftvnapavlllamlaallaaalwlllatylglPvStshtlvGaiiGaglaagglsgvnws.....................glllkivlswiisPilggliaallflllkklilkrkkslkralrvvpvlv..................................................................................................................................................ekekveklfrilqilsaalvsfahGanDvanaiGplaailiiyaagsvaesk..savplwilllgalaialGlltggrrviktvGekitkltparGfsaelaaaltvllasllglPvStThvivgaivGvglarglkavnwkvvrkivlaWilTlpvsall 325
                  iGanDvana+at+vg+ka+++++Av++a++fef+Ga+l+g++V+ktirkgi d  +f+ ++p +l+++m++++l++a+wll+a+y+++PvSt+h++vG+iiG+ l+++g + v w+                       +++i++sw++sP+++g++aa+l+ ++k+ il  + s+ ra   +p++v                                                                                                                                                  +++k+e++fr++q+++a++ sf+hGanDvana+Gp+aa +i+++ gsv++++  +   +wil++g+++i++Gl+t+g+++++ +G k+  +tp+rG+++el+aa++++  ++ g+P StTh++vga+v+vgl +g+ +vn +++ k++++W++Tl + + +
  MMETSP0890-20130614|11786_1  52 IGANDVANAFATSVGAKAISVRTAVLFASVFEFAGAVLMGSSVSKTIRKGIADVACFE-DNPGLLIYGMTCVILSVAVWLLVASYFEMPVSTTHSAVGGIIGMTLMSRGHKCVIWNfsrkdygngttnygfdnfpwlDGVAEIAVSWVLSPVASGFCAAVLYSVTKYGILVWDTSYLRARIFFPLVVfftaavntafwiikgtagrpkrfrtsryvreskdgnlassvelacivgaccafvsaclvipmtkwvdeefadggpghmemkdveaskptdeegkfegtatashipdsdeiqtydvatyvkaelerdphaclnkdetvkgihdnatvFDPKTEAFFRYVQVFTAMVDSFSHGANDVANAMGPFAASYIAWKRGSVKKEHdlHNDMTWILAIGGVGIVVGLATYGYKIMTAMGVKLAAVTPSRGYCIELGAAFVIIYGTAQGWPLSTTHCQVGATVAVGLFEGSAGVNGRLLLKTAFGWVITLAIVGSM 544
                  8********************************************************6.99*************************************************99*************************6699*****************************99999999988888777999***********************************************************************************************************************************************************************************************98774423358************************************************************************************************998766 PP

>> PF13063.1  Protein of unknown function (DUF3925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.5   0.00032       1.5      34      62 ..     129     157 ..     114     161 .. 0.80
   2 ?    1.9   0.1     0.045   2.1e+02      43      60 ..     532     549 ..     519     551 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00032
    PF13063.1  34 GlflskyfslaGeislplvGGlvGlfvms 62 
                   l++++yf++    +   vGG++G+ +ms
  MMETSP0890-20130614|11786_1 129 WLLVASYFEMPVSTTHSAVGGIIGMTLMS 157
                  37789***********************9 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.045
    PF13063.1  43 laGeislplvGGlvGlfv 60 
                  +   i+l +vG +  +fv
  MMETSP0890-20130614|11786_1 532 FGWVITLAIVGSMAAFFV 549
                  345799**********98 PP

>> PF11234.3  Protein of unknown function (DUF3036)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.3    0.0015       6.7     109     139 ..     103     133 ..       4     134 .. 0.68
   2 ?    0.3   0.1     0.098   4.5e+02       3      42 ..     222     261 ..     221     306 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0015
    PF11234.3 109 ylaaeeddaPGliliglviifislviavlva 139
                    +a  +d PGl++ g+ ++++s+++++lva
  MMETSP0890-20130614|11786_1 103 ADVACFEDNPGLLIYGMTCVILSVAVWLLVA 133
                  5577789*********************996 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.098
    PF11234.3   3 lstlfLkivivliglvvLalqivlvpllakdeaekgpeia 42 
                  + t++L++ i++ ++v++  ++    +++k +a +   ++
  MMETSP0890-20130614|11786_1 222 WDTSYLRARIFFPLVVFFTAAVNTAFWIIKGTAGRPKRFR 261
                  6688888888888888888777776676666655444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.88
# Mc/sec: 1541.29
//
Query:       MMETSP0890-20130614|11787_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-09   34.9   0.0    3.3e-06   26.4   0.1    2.2  2  PF01852.14 START domain


Domain annotation for each model (and alignments):
>> PF01852.14  START domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   2.4e-10   3.3e-06      66     188 ..     238     387 ..     210     395 .. 0.80
   2 !    6.0   0.0   0.00042       5.8     138     188 ..     587     640 ..     573     645 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.4e-10
                  TTTGG.......---TT-S....EEEEEEE----...........EEEEEEEE----------EE..EEEEEEEEE.----EEE---B--------.......----EE-B----EEEEEE----TEEEEEEE--B------HHHHHHHHHHH CS
   PF01852.14  66 lddke.......qWdetla....kaetlevissg...........galqlmvaelqalsplvpRd..fvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                  l++ +       qW++t +    + e+le i++             ++     + ++  p+++Rd  +v++Ry  + +  d +++ +Sv+++++         +s++vR +  + g+l + ++ ++++v+ v   d+kg +p+ +++ +   +
  MMETSP0890-20130614|11787_1 238 LESEQckrvydgQWKKTTIirdlDSELLENIEKSsdkenaihvrnVVVRRDEYNGVF--PAKARDaiVVYARYDYK-KNADTALCLTSVCPQDNTRDaahasdDSNYVRMQIDCGGYLCKALDSNRTRVISVVVLDPKGLVPTPVVNFVAMDR 387
                  4444444555559***999999999******999999*9999965555555666666..******55566677777.888899*******999877677777899***************************************999776655 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00042
                  ...----EE-B----EEEEEE----T.EEEEEEE--B------HHHHHHHHHHH CS
   PF01852.14 138 e..sssvvRaellpSgiliepksngh.skvtwvehvdlkgrlphwllrslvksg 188
                     ++++vR  +++ g+l++++s +h + +t    +d++g lp  l ++l k +
  MMETSP0890-20130614|11787_1 587 LqnDAKLVRMIVHLNGFLFRTTSTPHrTLTTNFALFDPSGGLPNRLRERLAKAR 640
                  334899*************************************99888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       652  (0.0476887); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.86
# Mc/sec: 1825.13
//
Query:       MMETSP0890-20130614|11782_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   12.4   0.3       0.15   11.2   0.2    1.7  1  PF10588.4 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region


Domain annotation for each model (and alignments):
>> PF10588.4  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.1e-05      0.15      13      34 ..      38      60 ..      27      66 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
                 ---TTT--.-----HHHHHHHH- CS
    PF10588.4 13 pldCltCd.knGeCeLQdlaeel 34
                 p++C +C+  + eCe Q++a+++
  MMETSP0890-20130614|11782_1 38 PNECRICEpTANECEAQQIAAKV 60
                 89*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.79
# Mc/sec: 779.57
//
Query:       MMETSP0890-20130614|11789_1  [L=733]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-33  114.0   4.5    4.2e-16   59.2   0.0    3.6  3  PF00005.22 ABC transporter
      1e-23   84.6   1.1    1.8e-07   31.3   0.1    4.6  3  PF13304.1  AAA domain
    2.4e-18   65.6   0.9    2.4e-18   65.6   0.6    5.9  5  PF12848.2  ABC transporter
    6.1e-12   46.2   3.7    9.3e-06   26.3   0.0    4.0  3  PF13207.1  AAA domain
      7e-11   41.6  10.9    1.5e-05   24.1   0.0    4.6  3  PF02463.14 RecF/RecN/SMC N terminal domain
    2.9e-10   39.4   0.0    0.00036   19.8   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
    3.5e-07   30.0   0.8      0.015   15.1   0.0    3.4  3  PF13671.1  AAA domain
    4.3e-07   30.3   0.0     0.0027   17.9   0.0    2.6  2  PF13191.1  AAA ATPase domain
    5.2e-07   29.7   0.1      0.024   14.6   0.0    3.3  2  PF13401.1  AAA domain
    5.2e-07   28.8   0.0     0.0029   16.6   0.0    2.4  2  PF03193.11 Protein of unknown function, DUF258
    1.2e-06   28.5   0.1      0.067   13.2   0.0    3.2  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.3e-06   27.9  26.3    0.00063   20.0   0.0    4.9  4  PF13476.1  AAA domain
    2.5e-06   27.7   5.1      0.051   13.7   0.0    4.2  3  PF13238.1  AAA domain
    2.8e-05   23.9   3.4      0.084   12.7   0.0    3.7  3  PF13521.1  AAA domain
    4.7e-05   23.2   0.0       0.32   10.8   0.0    2.9  2  PF01926.18 50S ribosome-binding GTPase
    5.8e-05   22.4   0.0      0.042   13.1   0.0    2.7  2  PF13481.1  AAA domain
    6.3e-05   23.0   0.1        0.5   10.4   0.0    3.1  2  PF00910.17 RNA helicase
    6.6e-05   22.2   8.9        0.1   11.6   0.0    4.6  4  PF12846.2  AAA-like domain
    0.00033   20.2   1.0        0.9    9.1   0.0    3.3  3  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
    0.00061   18.5   0.0       0.05   12.2   0.0    2.3  2  PF03215.10 Rad17 cell cycle checkpoint protein
    0.00083   19.7   0.1       0.47   10.8   0.0    3.1  2  PF08477.8  Miro-like protein
     0.0011   18.7   0.0        3.7    7.3   0.0    3.8  4  PF13173.1  AAA domain
     0.0015   18.1   0.0        2.9    7.5   0.0    2.9  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0016   17.9   0.1        1.4    8.3   0.0    2.8  2  PF05729.7  NACHT domain
     0.0027   17.4   0.2       0.59    9.9   0.0    3.2  2  PF13558.1  Putative exonuclease SbcCD, C subunit
     0.0054   16.0   0.0        1.9    7.7   0.0    2.4  2  PF00488.16 MutS domain V
     0.0058   16.2   0.2        5.5    6.5   0.0    3.3  3  PF03266.10 NTPase
      0.006   16.0   0.2        4.2    6.7   0.0    2.7  2  PF03029.12 Conserved hypothetical ATP binding protein
     0.0089   15.3   0.0        1.2    8.3   0.0    2.7  2  PF01695.12 IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.042   13.3   0.0        3.3    7.2   0.0    2.5  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.043   13.4   0.0        2.1    8.0   0.0    2.5  2  PF13245.1  Part of AAA domain
       0.06   13.1   0.2       0.06   13.1   0.1    2.9  2  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
      0.069   12.8  11.2       0.82    9.3   0.0    4.5  4  PF00350.18 Dynamin family
        0.6    9.7   0.0        0.6    9.7   0.0    3.9  4  PF01935.12 Domain of unknown function DUF87
        1.3    7.6   9.6          4    6.0   0.0    3.3  3  PF03308.11 ArgK protein
        9.2    4.6  16.7         36    2.7   9.7    2.1  2  PF04499.10 SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       2.8   1.1e+03      39      65 ..      56      86 ..       6     159 .. 0.67
   2 !   54.2   0.1   3.9e-17   1.5e-14       1     118 []     226     368 ..     226     368 .. 0.85
   3 !   59.2   0.0   1.1e-18   4.2e-16       1     118 []     550     659 ..     550     659 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 2.8
                 EE-------.--BHHHHHH----S--....- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
   PF00005.22 39 yipqdpllfpeltvrenldmakeekk....t 65
                 + + +++lf++++ +e+++ +ke kk    +
  MMETSP0890-20130614|11789_1 56 MGKGEEQLFEKKKTKEEIAKEKEAKKaeakA 86
                 3344455554445555555555555544441 PP

  == domain 2    score: 54.2 bits;  conditional E-value: 3.9e-17
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--.......................-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk.......................tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  ST++k++++   p + +i +    ++ + +++ +l+   ++ ++ ++l  + ++ +++ +++e+++                       +++r+  +l+ +g+++ +++ +++++SgG+++rvalAral+ +p+ l+LDEPtn
  MMETSP0890-20130614|11789_1 226 STIMKAIAARAIPIQDSIDLYFLSHEYPATDTPALKavYEVDEERAQLEADAEKVNEIIAETEDEEtqtklsdhlnllyerldeldattAEARASSILHGLGFTKNMQSMKTKEFSGGWRMRVALARALFLQPTCLVLDEPTN 368
                  899999999999999999888446678888888888845555555555566666666666666656799999999******************************99999********************************8 PP

  == domain 3    score: 59.2 bits;  conditional E-value: 1.1e-18
                  HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------......--BHHHHHH----S--.-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllf.....peltvrenldmakeekk.tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  ST +klltgel+pt g ++ + +            lr++   q+  ++     p l+    l +++     + ++++ +l ++g++++ +  ++++LS Gqk r++ Ar+ l kp+lllLDEPtn
  MMETSP0890-20130614|11789_1 550 STFVKLLTGELQPTVGAVRPHmH------------LRMAKFTQHFEDMldlekPALEWIHALYPKE---FdKIEKARSWLGRYGCTNKQQAMPMKQLSDGQKARIVFARLALDKPHLLLLDEPTN 659
                  9********************33............4588888888888553344444444443333...24899*************9999*********************************8 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   4.7e-10   1.8e-07       3     303 .]     216     400 ..     215     400 .. 0.61
   2 !   15.2   0.0   3.8e-05     0.014       3      19 ..     540     556 ..     539     564 .. 0.90
   3 !   29.5   0.0   1.6e-09   6.2e-07     182     302 ..     573     690 ..     565     691 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.7e-10
    PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvlld 303
                  ++iGpNgsGKS+++ka++                + ++i +++ l++  ++   +     + + + ++ r  +e + +++                              +++  + +++++  +l   ln  ++ l   ++t+  +r++sil+ l +    + + +++ +++f                                                             S G +   al+ al+  +   + l++DEp n+L+  ++  l    + l+n++  l+f++HS  +++
  MMETSP0890-20130614|11789_1 216 GFIGPNGSGKSTIMKAIAA---------------RAIPIQDSIDLYFLSHEYPATDTPALKAVYEVDEERAQLEADAEKV------------------------------NEIIAETEDEETQTKLSDHLNLLYERLDELDATTAEARASSILHGLGF----TKNMQSMKTKEF-------------------------------------------------------------SGGWRMRVALARALFLQP---TCLVLDEPTNHLDMDAVFWLE---DYLANWNKMLLFVSHSQDFMN 400
                  59***************75...............3346666666666666666666666666666666666666666666..............................222222222222222222222222222222222222222222222222....333333333333.............................................................99977778**********...**************9999999...5558899999*****988776 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 3.8e-05
    PF13304.1   3 viiGpNgsGKSnlLkal 19 
                  +++GpNg+GKS++ k l
  MMETSP0890-20130614|11789_1 540 ALVGPNGAGKSTFVKLL 556
                  79*************98 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.6e-09
    PF13304.1 182 krlldllikgiddleielsdlkkvlklsllidedllek...dviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                  +r+++   +  d l++e+  l++++ l+ +++++++++     ++  +++++  p+ +lSdG+k  + ++ + l+ +    +ll+DEp n+L+ + + +l++++++ +     l++++H+  l+
  MMETSP0890-20130614|11789_1 573 LRMAKFTQHFEDMLDLEKPALEWIHALYPKEFDKIEKArswLGRYGCTNKQQAMPMKQLSDGQKARIVFARLALDKP---HLLLLDEPTNSLDIESIDALARMINSFQG---GLVLVSHDMRLI 690
                  66677777888888999999999999999999999999999*************************77777777777...99**********************99977...899999987776 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.2       4.3   1.6e+03      49      71 ..      20      39 ..       5      56 .. 0.54
   2 ?   -0.6   0.2       2.8     1e+03      26      70 ..     270     307 ..     263     321 .. 0.54
   3 !   65.6   0.6   6.2e-21   2.4e-18       6      70 ..     414     479 ..     411     491 .. 0.92
   4 ?   -1.8   0.0       6.8   2.6e+03      31      57 ..     598     622 ..     575     634 .. 0.69
   5 ?    3.1   0.0      0.19        73       3      33 ..     700     730 ..     698     732 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 4.3
    PF12848.2 49 rfrakaskakqaqsrekalekme 71
                    a a+kakq++   +++ +me
  MMETSP0890-20130614|11789_1 20 SSWA-AKKAKQQE--WQQMREME 39
                 3333.34444332..23344444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.8
    PF12848.2  26 leqqekayekqqkeikkleefIdrfrakaskakqaqsrekalekm 70 
                  ++q        ++  +k  e+I+     ++++k +      +e++
  MMETSP0890-20130614|11789_1 270 RAQL-------EADAEKVNEIIAETEDEETQTKLSDHLNLLYERL 307
                  3444.......4445555555555555555555555555555555 PP

  == domain 3    score: 65.6 bits;  conditional E-value: 6.2e-21
    PF12848.2   6 gklteYkGnYseyleqkeerleqqekayekqqkeikkleefIdrfra.kaskakqaqsrekalekm 70 
                  +kl +Y+Gn+++y+++++ r e+q+++y+++q+ i++ ++fI+rf++   ++ +qaqsr+k l+k 
  MMETSP0890-20130614|11789_1 414 KKLDYYTGNFDSYVQERKIRDEEQQRKYDAEQRDIAEIKDFIARFGHgTVKMVRQAQSRQKLLDKK 479
                  89********************************************8455**************95 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 6.8
    PF12848.2  31 kayekqqkeikkleefIdrfrakaska 57 
                  + y k+ ++i+k +++  r++   ++ 
  MMETSP0890-20130614|11789_1 598 ALYPKEFDKIEKARSWLGRYGC--TNK 622
                  5677777888888888888886..333 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.19
    PF12848.2   3 lengklteYkGnYseyleqkeerleqqekay 33 
                  ++n +lt+Y+G+  ++    +++++++++++
  MMETSP0890-20130614|11789_1 700 VNNRTLTRYEGDIMKFKLAAKKENKKRLAQH 730
                  6899************777666666666654 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.4e-08   9.3e-06       2      73 ..     215     302 ..     214     334 .. 0.66
   2 ?    1.3   0.1       1.3   4.9e+02      65      91 ..     413     438 ..     349     485 .. 0.48
   3 !   17.1   0.0   1.7e-05    0.0066       1      32 [.     538     575 ..     538     730 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.4e-08
                  E--B--TT---HHHHHHHHHHSTEEEEEGGG.B-...........-GGGS-B-----B--SSGGGB-HHHHHHHH..........H..HH CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd.ll...........reeglkelddgereskdadadllaaildglaa......kkdtlsw 73 
                  ++++Gp GsGKsT++k++a r  +p+ +  d ++             ++++e+ d+er   +ada+++++i+++  +        d+l++
  MMETSP0890-20130614|11789_1 215 YGFIGPNGSGKSTIMKAIAAR-AIPIQDSIDlYFlsheypatdtpALKAVYEV-DEERAQLEADAEKVNEIIAETEDeetqtkLSDHLNL 302
                  7899*****************.5887644442325777777755555555555.344444688888888887766433433333333333 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 1.3
                  ....H..HHHHHHTTS.----------- CS
    PF13207.1  65 aakkdtlswvidgale.seldlrleead 91 
                  ++k d+++  +d+    +e ++r ee +
  MMETSP0890-20130614|11789_1 413 TKKLDYYTGNFDS--YvQERKIRDEEQQ 438
                  2233444444444..1122222222222 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1.7e-05
                  EE--B--TT---HHHHHHHHHHS....T..EEEEEGGG CS
    PF13207.1   1 viaitGppGsGKsTlakeLaerl....g..lpvlsldd 32 
                  +ia++Gp G+GKsT+ k+L  +l    g   p+ +l +
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGELqptvGavRPHMHLRM 575
                  79*****************8888444423322444444 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   4.1e-08   1.5e-05      29     212 ..     217     410 ..     202     417 .. 0.71
   2 !    8.0   0.0    0.0036       1.4      27      41 ..     539     553 ..     528     559 .. 0.85
   3 !   12.8   0.0   0.00012     0.044     129     207 ..     623     695 ..     605     706 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 4.1e-08
                  E--------HHHHHHHHHH------.-------TTSS----------EEEEEEEE..E----E.......EEEEEEEE----EEEEE...........---EE-HHHHHHHHHCTT--TT....................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-.SEEE--E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
   PF02463.14  29 ivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitf..dnedkelvieeeevsitrrvkrkgeseyki...........ngkevtkkevaellesagiske....................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka.dklvgvt 212
                   +GpNGSGKs ++ Ai       +a+++  ++  dl + s++ ++++   ++ ++  d+e ++l+ ++e+v+      +++e++ k+           +            l  +  +                      ++SgG +  vala  +     +p++l +lDe   +LD   v  + ++l + +    ++ +s+++++++ +  +++++ 
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAI-------AARAIPIQDSIDLYFLSHEYPATDTPALKAVYevDEERAQLEADAEKVNEIIAETEDEETQTKLsdhlnllyerlD-----------ELDATTAEARassilhglgftknmqsmktkEFSGGWRMRVALARAL---FLQPTCL-VLDEPTNHLDMDAVFWLEDYLANWN--KMLLFVSHSQDFMNTVcTHIIRLN 410
                  58**************.......78889999999999999999999**9***99955455555555556655555555555566666333333344443...........3333333333445555555555588888889****99888887664...4689998.79*******************9988..446777888888876536666655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0036
                  EEE--------HHHH CS
                  xxxxxxxxxxxxxxx RF
   PF02463.14  27 taivGpNGSGKsnvl 41 
                   a+vGpNG+GKs ++
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFV 553
                  689*********987 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00012
                  CTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 129 sagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadk 207
                  ++ + +++LS G+k+     ++fA  + ++  l llDe    LD + + ++a+++++ +    ++ +s++ ++++++ k
  MMETSP0890-20130614|11789_1 623 QQAMPMKQLSDGQKA----RIVFARLALDKPHLLLLDEPTNSLDIESIDALARMINSFQ--GGLVLVSHDMRLISQVAK 695
                  567778899****97....7899999999999***********************9988..677888888877777655 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.6e-07   0.00036      23      45 ..     212     234 ..     200     243 .. 0.81
   2 !   16.7   0.0     9e-06    0.0034      12      40 ..     526     553 ..     525     561 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 9.6e-07
    PF13555.1  23 gkntlltGasGsGKSTllDAiqt 45 
                  g+ + ++G++GsGKST++ Ai++
  MMETSP0890-20130614|11789_1 212 GNRYGFIGPNGSGKSTIMKAIAA 234
                  456779**************987 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 9e-06
    PF13555.1  12 fdghtveidpkgkntlltGasGsGKSTll 40 
                  f++ ++ id ++   +l+G++G+GKST++
  MMETSP0890-20130614|11789_1 526 FSHVEFGIDLES-RIALVGPNGAGKSTFV 553
                  667788889886.99************97 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00047      0.18       4      62 ..     217     310 ..     216     370 .. 0.59
   2 ?   -1.9   0.1       6.4   2.4e+03      21     133 ..     414     451 ..     409     473 .. 0.49
   3 !   15.1   0.0   3.8e-05     0.015       2      39 ..     539     577 ..     539     612 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00047
    PF13671.1   4 lvGlpGsGKstlaerllkklgyvrlsqdt........................lrkrlfg............tdqqsktdytrvlkrlyqilnkl 62 
                  ++G+ GsGKst  ++++++  + + ++ +                        +r +l++            +d +++t+ ++ l+ ly++l +l
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARA-IPIQDSIDlyflsheypatdtpalkavyevdeERAQLEAdaekvneiiaetEDEETQTKLSDHLNLLYERLDEL 310
                  79*************98543.22222222344444446666665555555555333333222223333333334444444555555555555555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 6.4
    PF13671.1  21 kklgyvrlsqdtlrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvrivylevpeetlreRlakRerngddrsevpeeal 133
                  kkl+y++ + d + ++ + +d ++++                                                                        + + +   + + + +
  MMETSP0890-20130614|11789_1 414 KKLDYYTGNFDSYVQERKIRDEEQQR------------------------------------------------------------------------KYDAE---QRDIAEI 451
                  55556665555555533333333222........................................................................22211...1233333 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 3.8e-05
    PF13671.1   2 vllvGlpGsGKstlaerllkklg.yvrlsqdtlrkrlfg 39 
                  + lvG+ G+GKst+++ l  +l+ +v    + ++ r+++
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGELQpTVGAVRPHMHLRMAK 577
                  579***************999997666666666666665 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.2e-06    0.0027      28     144 ..     217     373 ..     210     394 .. 0.67
   2 !    9.4   0.0    0.0029       1.1      25     156 ..     538     674 ..     527     683 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.2e-06
    PF13191.1  28 vtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa.lrellrqlltelaaelggwreallaalga......lipelegiiglqalvalldaalartr......................................rpklvlvlDD...lqwad 144
                  ++Gp G+GKS+++++     +++r+  +   +d++  + +y a +   l+++++ +  e+a+ l++++e+ ++++++      ++  ++++  l + +++lda  a++r                                      +p ++lvlD+   + ++d
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKA-----IAARAIPIQDSIDLYFLSHEYPATDTPaLKAVYE-VDEERAQ-LEADAEKVNEIIAEtedeetQTKLSDHLNLLYERLDELDATTAEARassilhglgftknmqsmktkefsggwrmrvalaralflQP-TCLVLDEptnHLDMD 373
                  58*************.....8888888999999999887777777774555555.4444443.33344444444444357444333333333334555555555555559999999999999999999999999999999987777444.999999764433333 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0029
    PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa..........lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr.......rpklvlvlDD.lqwadresldlLealle 156
                   + ++Gp G GKS+ ++      l  +l+ + g ++ +   l+++ ++q           + e + +l +++ ++++ +r+ l     +          ++ ++++l++ ++ +        +++ +l+lD+    +d es d+L+++++
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKL-----LTGELQPTVGAVRPHMH-LRMAKFTQHfedmldlekpALEWIHALYPKEFDKIEKARSWLGRYGCT-------NKQQAMPMKQLSDGQKARIvfarlalDKPHLLLLDEpTNSLDIESIDALARMIN 674
                  4789************99.....77788877777777766.578887777666666666666666666666666666666666655555.......222223333333333333355555554447777777667777777777766665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1    0.0009      0.34      10      37 ..     218     256 ..     215     397 .. 0.71
   2 !   14.6   0.0   6.2e-05     0.024       7     123 ..     539     684 ..     534     690 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0009
    PF13401.1  10 tGesGvGKTtllrrlarqldeeaeaae...............k 37 
                  +G+ G+GK+t ++ +a ++   + + +               +
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAARA---IPI-QdsidlyflsheypatD 256
                  8***************986...222.13355555555555553 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 6.2e-05
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg...........................rltteell.ealqealrrrrt.........rlliiDEaqr.LseealeelrsllddetgvklvlvG 123
                  ++++G+ G+GK+t+++ l  +l        +++v  v +       ++ q +   l+l++ +                           +++++++  ++l +  ++r +          ll++DE  + L  e ++ l ++ + + + +lvlv 
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGEL--------QPTVGAVRPHMHLRMAKFTQHFEDMLDLEKPAlewihalypkefdkiekarswlgrygcTNKQQAMPmKQLSDGQKARIVfarlaldkpHLLLLDEPTNsLDIESIDALARMIN-SFQGGLVLVS 684
                  689******************9........677777777777788888888888888888888888888888888888888889988884444444436666666666668888889999******999999*******99999.9999999885 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0011      0.42       8      59 ..     184     236 ..     177     300 .. 0.80
   2 !   16.6   0.0   7.7e-06    0.0029      37      70 ..     538     571 ..     526     592 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0011
                  HHH---EEEEEECHHHTT-HHHHHHCTT.SBEEEE-------HHHHHHH---- CS
   PF03193.11   8 leklgyevlvlsvktkegleelaellkd.ktsvlvGqSGvGKSsLinallpel 59 
                   ++++++ +++s +  + +e+  ++l+  +   ++G+ G GKS++++a++ ++
  MMETSP0890-20130614|11789_1 184 SRDIQVRDVTISFHGANLIENTDFVLNYgNRYGFIGPNGSGKSTIMKAIAARA 236
                  567778888888888999999999999879999**************998765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 7.7e-06
                  BEEEE-------HHHHHHH--------S------ CS
   PF03193.11  37 tsvlvGqSGvGKSsLinallpeldlkvgevsekl 70 
                   ++lvG+ G+GKS++++ l++el+  vg+v+ + 
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGELQPTVGAVRPHM 571
                  4689**************************9764 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00018     0.067       3      30 ..     217     251 ..     215     323 .. 0.59
   2 !   11.8   0.0   0.00049      0.19       2      38 ..     540     595 ..     539     683 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00018
                  EE-------HHHHHHHHHHC.......THEEEEEE CS
   PF00004.24   3 lyGppGtGKTllakavakel.......gvefleis 30 
                  ++Gp G GK++++ka+a  +       + +fl+ +
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARAipiqdsiDLYFLSHE 251
                  79***************996554443323333333 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00049
                  EEE-------HHHHHHHHHHCT......HEEEEEECCSSSSS.............T CS
   PF00004.24   2 llyGppGtGKTllakavakelg......vefleisgsellsk.............y 38 
                   l+Gp G GK++++k +  el+      ++ + + +++++++             +
  MMETSP0890-20130614|11789_1 540 ALVGPNGAGKSTFVKLLTGELQptvgavRPHMHLRMAKFTQHfedmldlekpaleW 595
                  699*****************973333333444444444443333333333333330 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   6.6       4.6   1.8e+03     138     188 ..      55      96 ..       3     146 .. 0.55
   2 !   20.0   0.0   1.6e-06   0.00063      22      40 ..     215     233 ..     188     236 .. 0.69
   3 ?    4.2   1.5      0.11        43      93     198 ..     268     452 ..     239     482 .. 0.64
   4 !   12.7   0.0   0.00028      0.11      22      37 ..     539     554 ..     525     558 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 4.6
    PF13476.1 138 ylgqerekekfklkekkkrleelekeleeledekellekllqeeekekele 188
                    g+++ ++ f++k++k+++++ +++ + + + k++ +k         e+e
  MMETSP0890-20130614|11789_1  55 AMGKGE-EQLFEKKKTKEEIAKEKEAKKAEAKAKREAKKA--------EKE 96 
                  334444.555555555554444444444433333333332........222 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.6e-06
    PF13476.1  22 tlItGpNGsGKTTildAic 40 
                    ++GpNGsGK+Ti++Ai 
  MMETSP0890-20130614|11789_1 215 YGFIGPNGSGKSTIMKAIA 233
                  5799*************96 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.11
    PF13476.1  93 eerektkkkgkkvkkeilelleideleqfleellksdkeilpliaylgqer..........ekekfklkekkk...........................................................................rleelekeleeledekellekllqeeekekeleeleeeleell 198
                  eer   + + +kv++ i  ++e++e + +l+++l+   e+l+ ++   +e           + ++ +  ++k+                                                                           +l+ ++  ++ + +e++     +++ee+++++++ + +++e++
  MMETSP0890-20130614|11789_1 268 EERAQLEADAEKVNE-IIAETEDEETQTKLSDHLNLLYERLDELDATTAEArassilhglgFTKNMQSMKTKEfsggwrmrvalaralflqptclvldeptnhldmdavfwledylanwnkmllfvshsqdfmntvcthiirlnehtkKLDYYTGNFDSYVQERK-----IRDEEQQRKYDAEQRDIAEIK 452
                  444444444444433.33445556666677777777777776666655555566666666534444444444477788888888888888888888888888888888888888888888888888888888888888888444444444444444444444443.....455555666666666666654 PP

  == domain 4    score: 12.7 bits;  conditional E-value: 0.00028
    PF13476.1  22 tlItGpNGsGKTTild 37 
                  ++++GpNG+GK+T+ +
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVK 554
                  5889*********986 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   0.00013     0.051       3      79 ..     217     305 ..     216     321 .. 0.57
   2 ?    0.2   0.1         2   7.5e+02      26      67 ..     409     449 ..     400     477 .. 0.77
   3 !   12.2   0.0   0.00038      0.15       1      68 [.     539     612 ..     539     659 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00013
    PF13238.1   3 itGtpGvGKtTlakeLaerl...gdvlrdlakengleeevddk.......idtkeskeldedkldelldkleenes..elaegenviid 79 
                  + G+ G+GK+T+ k++a r     d++  ++ ++++  ++++         +++ + e+d +k++e++ + e+ e   +l ++ n++++
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARAipiQDSIDLYFLSHEYPATDTPAlkavyevDEERAQLEADAEKVNEIIAETEDEETqtKLSDHLNLLYE 305
                  57999************997777333333333333333333334443332222444455555555554444444335555555555554 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 2
    PF13238.1  26 lrdlakengleeevddkidtkeskeldedkldelldkleene 67 
                  l++  k+ +++++++d  ++ e k+ de+++ ++  +  ++ 
  MMETSP0890-20130614|11789_1 409 LNEHTKKLDYYTGNFDS-YVQERKIRDEEQQRKYDAEQRDIA 449
                  67777888888888888.888888888888887776666554 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00038
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl.........gdvlrdlakengleeevddkidtkeskeldedkldelldkleenes 68 
                  I+++G+ G+GK+T  k+L  +l         + +lr   +  ++e+ +d +   k+  e++   + + +dk+e+ +s
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGELqptvgavrpHMHLRMAKFTQHFEDMLDLE---KPALEWIHALYPKEFDKIEKARS 612
                  89****************999999999999988888888888888888888...77777777666666666666655 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.7       7.2   2.7e+03      31      72 ..      48      90 ..      34      98 .. 0.76
   2 !   12.7   0.0   0.00022     0.084       4      50 ..     217     264 ..     214     299 .. 0.71
   3 !    9.0   0.0     0.003       1.1       1      22 [.     538     559 ..     538     605 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 7.2
    PF13521.1 31 arevleeklakgeealpwe.edllafaeavleaqleqeaaaaa 72
                 + + ++++++kgee+l ++ +++ ++a++ +++++e+ a+++a
  MMETSP0890-20130614|11789_1 48 VNDTSDSAMGKGEEQLFEKkKTKEEIAKEKEAKKAEAKAKREA 90
                 5566778899999999998888888888877666666665544 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00022
    PF13521.1   4 itGgpstGKTtlleaLaargypvvpEvarevleekl.akgeealpwee 50 
                  ++G+ ++GK+t+++a+aar +p+   +   +l++++ a+++ al++++
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARAIPIQDSIDLYFLSHEYpATDTPALKAVY 264
                  89*****************99998888777777777666666666553 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.003
    PF13521.1   1 kivitGgpstGKTtlleaLaar 22 
                  +i+++G+ ++GK+t ++ L+ +
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGE 559
                  79***************99854 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0027         1       2      22 ..     215     235 ..     214     312 .. 0.78
   2 !   10.8   0.0   0.00085      0.32       1      23 [.     538     560 ..     538     590 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0027
                  EEEE--TT---HHHHHHHHCS CS
   PF01926.18   2 vaivGrpNvGKStLinaLtge 22 
                   +++G   +GKSt+++a+  +
  MMETSP0890-20130614|11789_1 215 YGFIGPNGSGKSTIMKAIAAR 235
                  589***************842 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00085
                  EEEEE--TT---HHHHHHHHCST CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgek 23 
                  ++a+vG   +GKSt+++ Ltge 
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGEL 560
                  689*****************864 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00011     0.042      32     105 ..     211     292 ..     200     323 .. 0.65
   2 ?    6.2   0.0     0.014       5.4      31      51 ..     534     554 ..     512     561 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00011
    PF13481.1  32 rgsltllaGapgtGKStlalqlaaava............tGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlll 105
                   g+ + ++G+ g+GKSt++ ++aa+++            +  p ++   + +++ +y   E+ + +l+  ++++++ + ++e++  
  MMETSP0890-20130614|11789_1 211 YGNRYGFIGPNGSGKSTIMKAIAARAIpiqdsidlyflsHEYPATD---TPALKAVYEVDEERA-QLEADAEKVNEIIAETEDEET 292
                  5778889*******************98877655555443333333...345666665555555.888888888876655554443 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.014
    PF13481.1  31 prgsltllaGapgtGKStlal 51 
                  ++ s ++l+G+ g+GKSt++ 
  MMETSP0890-20130614|11789_1 534 DLESRIALVGPNGAGKSTFVK 554
                  6678899***********985 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0037       1.4       3      22 ..     217     236 ..     216     259 .. 0.85
   2 !   10.4   0.0    0.0013       0.5       1      25 [.     539     563 ..     539     586 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0037
   PF00910.17   3 lyGpsgeGKStlakeLakal 22 
                  + Gp+g GKSt++k +a++ 
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARA 236
                  67*************98765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0013
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkk 25 
                  i l+Gp+g GKSt++k L+ +l+ +
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGELQPT 563
                  5689*************99998755 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00027       0.1       6      25 ..     217     236 ..     215     241 .. 0.91
   2 ?   -1.4   1.6       2.6   9.9e+02     145     183 ..     425     463 ..     254     485 .. 0.60
   3 !    8.4   0.0    0.0027         1       5      23 ..     540     558 ..     538     567 .. 0.89
   4 ?    3.3   0.0     0.094        36     247     292 ..     651     692 ..     621     708 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00027
    PF12846.2   6 ilGppGsGKSvllkklvlql 25 
                  ++Gp GsGKS+ +k+++ ++
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARA 236
                  79**************9886 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.6
    PF12846.2 145 ealreeeeelaeealarderreaaeelalalerlldgal 183
                   +++e + +++e++++ d+++++++e+++ ++r+  g++
  MMETSP0890-20130614|11789_1 425 SYVQERKIRDEEQQRKYDAEQRDIAEIKDFIARFGHGTV 463
                  334444444444444444445566666666666655555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0027
    PF12846.2   5 lilGppGsGKSvllkklvl 23 
                  +++Gp G+GKS+++k l+ 
  MMETSP0890-20130614|11789_1 540 ALVGPNGAGKSTFVKLLTG 558
                  789************9965 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.094
    PF12846.2 247 llviDEahrllgspegadfldelaregRkfgvgiilatQslsdlpp 292
                  ll++DE  + l++    + +d+lar+  +f +g++l++++++ + +
  MMETSP0890-20130614|11789_1 651 LLLLDEPTNSLDI----ESIDALARMINSFQGGLVLVSHDMRLISQ 692
                  5555555555555....889*******************9976655 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       9.6   3.6e+03     105     121 ..      67      82 ..      28     101 .. 0.56
   2 !    9.1   0.0    0.0024       0.9       3      23 ..     215     235 ..     213     243 .. 0.87
   3 !    8.1   0.0    0.0047       1.8       2      21 ..     538     557 ..     537     573 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 9.6
                  -SEEEEEE-------GG CS
    PF03205.9 105 enpkivivkseeeveel 121
                  ++ k +i+k++e  +++
  MMETSP0890-20130614|11789_1  67 KKTKEEIAKEKE-AKKA 82 
                  222344444222.2222 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0024
                  EEEE-------HHHHHHHHHH CS
    PF03205.9   3 vavvGpkdsGKTtlieklvnk 23 
                    ++Gp +sGK+t+++ ++  
  MMETSP0890-20130614|11789_1 215 YGFIGPNGSGKSTIMKAIAAR 235
                  579*************99865 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0047
                  EEEEE-------HHHHHHHH CS
    PF03205.9   2 ivavvGpkdsGKTtlieklv 21 
                  ++a+vGp + GK+t+++ l 
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLT 557
                  799************99876 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.046        18      51      68 ..     218     235 ..     216     275 .. 0.82
   2 !   12.2   0.0   0.00013      0.05      49      93 ..     540     584 ..     534     604 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.046
   PF03215.10  51 tGPsGcgKsTtvkvlske 68 
                   GP G+gKsT++k ++  
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAAR 235
                  59***********99864 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00013
   PF03215.10  49 lltGPsGcgKsTtvkvlskelgikliewlnpvslkepdnehqksd 93 
                   l GP G+gKsT vk l+ el + +      + l+  ++  + +d
  MMETSP0890-20130614|11789_1 540 ALVGPNGAGKSTFVKLLTGELQPTVGAVRPHMHLRMAKFTQHFED 584
                  588*********************999988899999988544444 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.059        23       5      26 ..     218     245 ..     214     308 .. 0.66
   2 !   10.8   0.0    0.0012      0.47       1      25 [.     538     562 ..     538     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.059
    PF08477.8   5 vGdkgvGKssllsqlvgeefp......k 26 
                  +G  g+GKs++ ++++ +  p       
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAARAIPiqdsidL 245
                  899************9988886444432 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0012
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp 25 
                  ++++vG  g+GKs++++ l+ge +p
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGELQP 562
                  799**************99998777 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0098       3.7       8      42 ..     218     252 ..     212     341 .. 0.74
   2 ?   -1.5   0.0       5.1   1.9e+03      61      87 ..     357     385 ..     330     424 .. 0.62
   3 ?    6.3   0.0      0.02       7.4       5      28 ..     539     568 ..     536     615 .. 0.67
   4 ?   -1.1   0.0         4   1.5e+03      54      77 ..     641     664 ..     620     693 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0098
    PF13173.1   8 tGpRrvGKttllkqlakellkeesilyinlddeel 42 
                  +Gp ++GK+t++k +a + ++ ++ + + + + e+
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAARAIPIQDSIDLYFLSHEY 252
                  7**************99988444444444444333 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 5.1
    PF13173.1  61 kkkylflDEiqev..pewedalkslvddg 87 
                  + ++l+lDE ++    ++  +l  ++ + 
  MMETSP0890-20130614|11789_1 357 QPTCLVLDEPTNHldMDAVFWLEDYLANW 385
                  67899999988773322333344444433 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.02
    PF13173.1   5 lvitGpRrvGKttllkqlakell......k 28 
                  +++ Gp ++GK+t++k l  el       +
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGELQptvgavR 568
                  7899***********988877665555552 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 4
    PF13173.1  54 fleklkekkkylflDEiqevpewe 77 
                  f +++ +k ++l+lDE ++  ++e
  MMETSP0890-20130614|11789_1 641 FARLALDKPHLLLLDEPTNSLDIE 664
                  333355678999***998886554 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0087       3.3       5      35 ..     218     251 ..     217     275 .. 0.80
   2 !    7.5   0.0    0.0076       2.9       3      33 ..     540     570 ..     538     589 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0087
                  E------HHHHHHHGGGGB...S--EEEEE--TT CS
    PF07728.9   5 vGppGtgKselaerlaeal...nreveyvqltrd 35 
                  +Gp G+gKs++++ +a++    ++++  + l+  
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAARAipiQDSIDLYFLSHE 251
                  8*************99886677777666666555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0076
                  EEE------HHHHHHHGGGGBS--EEEEE-- CS
    PF07728.9   3 lLvGppGtgKselaerlaealnreveyvqlt 33 
                   LvGp G gKs+++++l   l+ +v  v  +
  MMETSP0890-20130614|11789_1 540 ALVGPNGAGKSTFVKLLTGELQPTVGAVRPH 570
                  59**************998887666655555 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015       5.5       6      22 ..     218     234 ..     215     251 .. 0.90
   2 !    8.3   0.0    0.0038       1.4       2      24 ..     538     560 ..     537     603 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.015
    PF05729.7   6 qGeaGsGKTtLlqklas 22 
                   G++GsGK+t ++ +a 
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAA 234
                  69***********9986 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0038
    PF05729.7   2 tvilqGeaGsGKTtLlqklasaw 24 
                   ++l+G++G GK+t+++ l  ++
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGEL 560
                  5899************9886655 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.12        45      63      80 ..     357     374 ..     327     383 .. 0.75
   2 !    9.9   0.0    0.0016      0.59      62      88 ..     647     673 ..     620     675 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.12
    PF13558.1  63 sirlvfLDEAFsklDeen 80 
                  ++  ++LDE+++ lD + 
  MMETSP0890-20130614|11789_1 357 QPTCLVLDEPTNHLDMDA 374
                  47889**********876 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0016
    PF13558.1  62 psirlvfLDEAFsklDeeniasllell 88 
                  +++ l++LDE++++lD e+i++l++++
  MMETSP0890-20130614|11789_1 647 DKPHLLLLDEPTNSLDIESIDALARMI 673
                  5799*****************999887 PP

>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.005       1.9      49      67 ..     218     236 ..     190     240 .. 0.76
   2 ?    5.8   0.0     0.019       7.3      45      61 ..     538     554 ..     519     580 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.005
                  E--TT---HHHHHHHHHHH CS
   PF00488.16  49 tGpNmgGKStylrqvaliv 67 
                   GpN +GKSt+++++a  +
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAARA 236
                  5*************99765 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.019
                  EEEEE--TT---HHHHH CS
   PF00488.16  45 lllitGpNmgGKStylr 61 
                   + + GpN +GKSt+++
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVK 554
                  45678**********98 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.081        31       6      22 ..     219     235 ..     214     240 .. 0.88
   2 ?    6.5   0.0     0.015       5.5       1      24 [.     538     561 ..     538     568 .. 0.87
   3 ?    1.3   0.0      0.59   2.2e+02     107     139 ..     571     602 ..     570     623 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.081
                  -------HHHHHHHHHH CS
   PF03266.10   6 GepgvGKtTlvkkvlel 22 
                  G+ g+GK+T++k ++++
  MMETSP0890-20130614|11789_1 219 GPNGSGKSTIMKAIAAR 235
                  99**********99875 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.015
                  EEEEE-------HHHHHHHHHH-. CS
   PF03266.10   1 rvfiTGepgvGKtTlvkkvlellk 24 
                  r+++ G+ g GK+T+vk ++ +l+
  MMETSP0890-20130614|11789_1 538 RIALVGPNGAGKSTFVKLLTGELQ 561
                  58899************9998886 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.59
                  -GGG-HHHHHHHHHHHTTTSEEEEE--SS--SH CS
   PF03266.10 107 mElkskkfkeaveevlssekpvlatvhrrkela 139
                  m l ++kf +  e++l+ ekp l  +h   + +
  MMETSP0890-20130614|11789_1 571 MHLRMAKFTQHFEDMLDLEKPALEWIHAL-YPK 602
                  88999*******************99987.334 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011       4.2       2      17 ..     218     233 ..     217     243 .. 0.88
   2 ?    6.4   0.1     0.013       4.9       2      17 ..     542     557 ..     541     566 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.011
   PF03029.12   2 vGpaGsGKttfvgals 17 
                  +Gp GsGK+t+++a++
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIA 233
                  8***********9986 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.013
   PF03029.12   2 vGpaGsGKttfvgals 17 
                  vGp G+GK+tfv+ l+
  MMETSP0890-20130614|11789_1 542 VGPNGAGKSTFVKLLT 557
                  8***********9875 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0033       1.2      50      80 ..     215     247 ..     196     252 .. 0.71
   2 ?    3.6   0.0     0.089        34      47      63 ..     536     552 ..     525     559 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0033
   PF01695.12  50 lvllGpsGvGKthlAialgveavr..aglsvlf 80 
                    ++Gp G GK+ +  a++ +a+   + +  +f
  MMETSP0890-20130614|11789_1 215 YGFIGPNGSGKSTIMKAIAARAIPiqDSIDLYF 247
                  4589******************86324444555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.089
   PF01695.12  47 aenlvllGpsGvGKthl 63 
                  ++ ++l+Gp G+GK+ +
  MMETSP0890-20130614|11789_1 536 ESRIALVGPNGAGKSTF 552
                  66799*********966 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.15        55      21      75 ..     218     270 ..     202     313 .. 0.61
   2 ?    7.2   0.0    0.0087       3.3      18      40 ..     539     561 ..     528     576 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.15
   PF02367.12  21 sGdlGaGKTtlvkglak.glgvkgevtSPtftlvevyeegklklyHlDlYRledke 75 
                   G+ G+GK t++k++a  ++ ++ ++    + l ++y +  ++ +   +Y +++++
  MMETSP0890-20130614|11789_1 218 IGPNGSGKSTIMKAIAArAIPIQDSID--LYFLSHEYPATDTPALK-AVYEVDEER 270
                  5899***********861558887775..58888888664433332.355555543 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0087
   PF02367.12  18 vlLsGdlGaGKTtlvkglakglg 40 
                  + L G+ GaGK t+vk l  +l+
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGELQ 561
                  7899************9988775 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0054       2.1      17      35 ..     219     236 ..     210     269 .. 0.84
   2 ?    2.4   0.0      0.31   1.2e+02      10      27 ..     537     553 ..     533     562 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0054
    PF13245.1  17 GgPGtGKTttlaaiiaall 35 
                  G+ G+GK+ t+ ++iaa++
  MMETSP0890-20130614|11789_1 219 GPNGSGKS-TIMKAIAARA 236
                  999*****.8888888776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.31
    PF13245.1  10 npllvvtGgPGtGKTttl 27 
                  +++  + G+ G+GK+t +
  MMETSP0890-20130614|11789_1 537 SRIA-LVGPNGAGKSTFV 553
                  4554.59********544 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00016      0.06      72     131 ..     253     312 ..     240     314 .. 0.88
   2 ?   -2.5   0.0        10   3.8e+03      16      40 ..     396     421 ..     393     427 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00016
    PF06148.6  72 eelesplaaarkkvesvrsklseveeeveskikekkdleeekellklllkldevvekled 131
                     ++p  +a+ +v++ r++l++  e+v++ i+e +d e + +l + l  l e++ +l++
  MMETSP0890-20130614|11789_1 253 PATDTPALKAVYEVDEERAQLEADAEKVNEIIAETEDEETQTKLSDHLNLLYERLDELDA 312
                  556789999*************************************99999999999987 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 10
    PF06148.6  16 dqFvse.lrkgvpLeslrrdLraysk 40 
                  ++F+++ +++ + L++  + L+ y  
  MMETSP0890-20130614|11789_1 396 QDFMNTvCTHIIRLNEHTKKLDYYTG 421
                  68999999999999999999998875 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.2       1.2   4.7e+02      54      79 ..      72      98 ..       9     180 .. 0.66
   2 ?    6.5   0.2     0.016         6       3      29 ..     217     243 ..     216     415 .. 0.72
   3 ?   -2.4   0.0       8.5   3.2e+03      31      66 ..     400     449 ..     390     462 .. 0.40
   4 ?    9.3   0.0    0.0022      0.82       1      21 [.     539     559 ..     539     568 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 1.2
                 -E-EE.T-----CHHHHHHHHHHH--- CS
   PF00350.18 54 evkee.ekkledfdevreeieketekl 79
                 e ++e e+k  ++++ re+ + e+e +
  MMETSP0890-20130614|11789_1 72 EIAKEkEAKKAEAKAKREAKKAEKEAV 98
                 111111222222222222222222222 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.016
                  EE--TT---HHHHHHH----------- CS
   PF00350.18   3 vvGsqSaGKSSllnaLlgedilprgpg 29 
                  ++G   +GKS++++a+  ++i   +++
  MMETSP0890-20130614|11789_1 217 FIGPNGSGKSTIMKAIAARAIPIQDSI 243
                  689999************998655544 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 8.5
                  -----EEEEEEE-----............-------E-EE..T-----CH CS
   PF00350.18  31 tTrrplvlqlgeeeras............eravkeevkee..ekkledfd 66 
                   T ++ +++l+e  +              er+ ++e++++   +++ d+ 
  MMETSP0890-20130614|11789_1 400 NTVCTHIIRLNEHTKKLdyytgnfdsyvqERKIRDEEQQRkyDAEQRDIA 449
                  55566666664333311222111111111111111111112233333333 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.0022
                  EEEE--TT---HHHHHHH--- CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlge 21 
                  ia+vG   aGKS++++ L ge
  MMETSP0890-20130614|11789_1 539 IALVGPNGAGKSTFVKLLTGE 559
                  89****************998 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   3.7       5.1   1.9e+03     120     180 ..      15     108 ..       3     157 .. 0.45
   2 ?    4.1   0.1     0.085        32      30      48 ..     219     237 ..     213     245 .. 0.85
   3 ?   -1.8   0.0       5.2     2e+03     142     176 ..     274     302 ..     235     331 .. 0.51
   4 ?    9.7   0.0    0.0016       0.6      23      47 ..     536     560 ..     525     566 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5.1
   PF01935.12 120 rsvleealeqakakeekeklssdepveklleelk...................................kekeelrklknqairrlldklerllrk 180
                  ++++ + ++  k   ++++++  + +e l e  +                                    e++  r++k+  ++++++  ++  ++
  MMETSP0890-20130614|11789_1  15 KKIVMSSWAAKK--AKQQEWQQMREMEGLDERARavndtsdsamgkgeeqlfekkktkeeiakekeakkAEAKAKREAKKAEKEAVNNNGDDSANT 108
                  555555555333..4555555555555555555544455555555554444444433333221111211111111222222222222222222222 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.085
   PF01935.12  30 gsTGsGKSntvavLleell 48 
                  g  GsGKS+ ++ + ++++
  MMETSP0890-20130614|11789_1 219 GPNGSGKSTIMKAIAARAI 237
                  666***********99876 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 5.2
   PF01935.12 142 depveklleelkkekeelrklknqairrlldkler 176
                  ++  ek++e +       + ++++++ +l+d+l+ 
  MMETSP0890-20130614|11789_1 274 EADAEKVNEIIA------ETEDEETQTKLSDHLNL 302
                  333333333333......22222222222222222 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.0016
   PF01935.12  23 trHlAilgsTGsGKSntvavLleel 47 
                  + ++A +g  G+GKS++v++L  el
  MMETSP0890-20130614|11789_1 536 ESRIALVGPNGAGKSTFVKLLTGEL 560
                  7789*****************9876 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   4.1       6.5   2.5e+03     186     253 ..       5      76 ..       1     101 [. 0.67
   2 ?    4.1   0.0     0.038        15      30      52 ..     213     235 ..     200     240 .. 0.87
   3 ?    6.0   0.0     0.011         4      30      54 ..     537     561 ..     520     567 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.5
                  HHHHHHHHHHS--SBTTB--EEEE-B....TTTTB--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
   PF03308.11 186 arelraaleleeekekeWrppvlkts....avegeGidelvdaieehrevlektGlleekrreraeeelkel 253
                  +++l+ a +l++   ++W ++  k        e eG+de + a+++  +     G+ +  ++++++ee+ + 
  MMETSP0890-20130614|11789_1   5 KTKLERATKLKKIVMSSWAAKKAKQQewqqMREMEGLDERARAVNDTSDSAMGKGEEQLFEKKKTKEEIAKE 76 
                  566677777777777777776665541111345689999999999999988888888877777777775443 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.038
                  EEE--B-------HHHHHH---H CS
   PF03308.11  30 lvvGltGvPGaGkstlveklike 52 
                  ++ G+ G  G+Gkst++++++++
  MMETSP0890-20130614|11789_1 213 NRYGFIGPNGSGKSTIMKAIAAR 235
                  5679*************998765 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.011
                  EEE--B-------HHHHHH---HHH CS
   PF03308.11  30 lvvGltGvPGaGkstlveklikelr 54 
                   ++ l G  GaGkst+v+ l+ el+
  MMETSP0890-20130614|11789_1 537 SRIALVGPNGAGKSTFVKLLTGELQ 561
                  57899*************9998875 PP

>> PF04499.10  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   9.7     0.094        36     242     340 ..      46     147 ..      38     152 .. 0.61
   2 ?    2.4   0.0      0.11        43     240     300 ..     258     426 ..     255     540 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.094
   PF04499.10 242 eeivkerDaererlleelqkaleeeeeseeeaedtsadae.qdsaedkreleasnasedseeededdeeseeseesees..aaelteeklrsdpvvgDylki 340
                  +++  + D    ++ e+l ++ +++ee ++e+e ++a+a+ + +a+++++ +++n+++ds ++++++++s+++  +++   ++++++++l+s+ ++ D l i
  MMETSP0890-20130614|11789_1  46 RAVNDTSDSAMGKGEEQLFEKKKTKEEIAKEKEAKKAEAKaKREAKKAEKEAVNNNGDDSANTKKKASKSKSASAKSKAmgNKKKSSNSLASNGTSDDALSI 147
                  556667777777888886666666666333444444444424455555555555555555555555555544444444478889999999999999998865 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.11
   PF04499.10 240 kgeeivkerDaererlleelqkaleeeeeseeeaedtsadae......qdsaedkreleasnased...........................................................................................................s 300
                  ++ + v+e D+er +l +  +k  e   e+e+e+++t+ +++              el+a+ a++                                                                                                             
  MMETSP0890-20130614|11789_1 258 PALKAVYEVDEERAQLEADAEKVNEIIAETEDEETQTKLSDHlnllyeR-----LDELDATTAEARassilhglgftknmqsmktkefsggwrmrvalaralflqptclvldeptnhldmdavfwledylanwnkmllfvshsqdfmntvcthiirlnehtkkldyytgnfdsY 426
                  6678899999***999998777777666666666666666656555431.....222222222222233455666666666666666666666666666666666666666666666666666666666666666666666666666666666666555555555555544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1866  (0.136483); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                       117  (0.00855764); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 1.68u 0.39s 00:00:02.06 Elapsed: 00:00:01.12
# Mc/sec: 1568.33
//
Query:       MMETSP0890-20130614|11883_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.8   4.3       0.66   10.2   0.5    2.1  2  PF06327.9 Domain of Unknown Function (DUF1053)
       0.17   11.9   2.1       0.21   11.7   1.5    1.1  1  PF04538.7 Brain expressed X-linked like family


Domain annotation for each model (and alignments):
>> PF06327.9  Domain of Unknown Function (DUF1053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0035        24      52      70 ..       2      20 ..       1      30 [. 0.74
   2 ?   10.2   0.5   9.7e-05      0.66      14      64 ..      26      78 ..      22      79 .] 0.63

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0035
    PF06327.9 52 ledEvderlgqaIdarsid 70
                 ++dE+d r+++++      
  MMETSP0890-20130614|11883_1  2 SQDEIDSRMQHNLASVDKS 20
                 68*********98766554 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 9.7e-05
    PF06327.9 14 anlkgsdqvskelkrm.gl.elkkskrfikkernaqekknledEvderlgqaI 64
                 +n++g++ + ++  r  +  ++ +  +f++  +   e+ +++dE+d r+++++
  MMETSP0890-20130614|11883_1 26 SNHHGNEGSNATKCRSgDYeNESERTKFDELYARSLEVEESQDEIDSRMQHNL 78
                 5666665544444444323133344445666788889999**********986 PP

>> PF04538.7  Brain expressed X-linked like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   3.1e-05      0.21       6      58 ..      18      73 ..      10      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.1e-05
    PF04538.7  6 kEneekpe.sepkeeeeeeekrpleegeekkaegnfrrrlarsl..kefredihnR 58
                 +++e +p+ + + +e  +  k+  +++e++ ++ +f++  arsl  +e++  i+ R
  MMETSP0890-20130614|11883_1 18 DKSEVNPQsNHHGNEGSNATKCRSGDYENESERTKFDELYARSLevEESQDEIDSR 73
                 5789999977777888888999****************999996226888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.79
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|11888_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.70
# Mc/sec: 191.71
//
Query:       MMETSP0890-20130614|11957_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-08   31.9   0.4    1.2e-07   31.3   0.3    1.2  1  PF01981.11 Peptidyl-tRNA hydrolase PTH2
  ------ inclusion threshold ------
       0.11   12.2   0.2        0.2   11.4   0.1    1.4  1  PF14420.1  Clr5 domain


Domain annotation for each model (and alignments):
>> PF01981.11  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.3   1.7e-11   1.2e-07       4      69 ..      66     133 ..      64     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1.7e-11
                  EEEEEESSSS..S----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEESSHHHHHHHHHH CS
   PF01981.11   4 mvlvvrkdlk..mgkGKiaaqcaHAavaavekvekkkkellkaWlkegqkKvvlkveseeellelaek 69 
                  + +v+rkdl     +G ++aq++HA++aa+ ++++++ + l   + + ++Kvvl+v++  el+++aek
  MMETSP0890-20130614|11957_1  66 QWIVLRKDLAetWPTGSMVAQACHASIAAIWESQNDELTQLYMKEIARMHKVVLEVKDDVELNTVAEK 133
                  789******722569***************998888888888888899**************999876 PP

>> PF14420.1  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.9e-05       0.2       5      29 ..      96     120 ..      93     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.9e-05
    PF14420.1   5 WeaykdiierLYidenksLkeVmei 29 
                  We+  d++++LY++e   +++V+ +
  MMETSP0890-20130614|11957_1  96 WESQNDELTQLYMKEIARMHKVVLE 120
                  ***************9999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 505.08
//
Query:       MMETSP0890-20130614|11993_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   13.2   0.0      0.036   12.9   0.0    1.1  1  PF07537.6 CamS sex pheromone cAM373 precursor
        0.2   10.8   7.6      0.052   12.7   1.9    1.9  1  PF10147.4 Growth arrest and DNA-damage-inducible proteins-interacting protein 1


Domain annotation for each model (and alignments):
>> PF07537.6  CamS sex pheromone cAM373 precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.2e-06     0.036     174     235 ..      51     109 ..      44     125 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.2e-06
                  E--BTT-S----EEEEEEE-TT-------B----EEEEES-HHHHHH---HHHHHHHHHHHH CS
    PF07537.6 174 kqeskdslvpGnfiakatvekgsteisnweeineknylfPsdeaaekkeedndkfknFkkev 235
                  k + k+++v+G++  +   e+g   + +w+ei+e ++l+P++ + +++++  +++++  +++
  MMETSP0890-20130614|11993_1  51 KVARKQAIVNGTYG-TFDFEAGG-WLPEWDEIKEPKVLYPTKSK-KSDRTRAERVERIDQAM 109
                  66789999999997.45566666.8***************8443.34444555555544443 PP

>> PF10147.4  Growth arrest and DNA-damage-inducible proteins-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.9   7.5e-06     0.052      97     148 ..      73     127 ..      65     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.5e-06
    PF10147.4  97 wlpslkemlee...lkeqqkekearrqareaeiakkleKlpkliadlraqkakke 148
                  wlp+  e++e    +  + k+ ++ r +r + i++ ++ +p+ i ++ra +++++
  MMETSP0890-20130614|11993_1  73 WLPEWDEIKEPkvlYPTKSKKSDRTRAERVERIDQAMKAMPEKIKEYRAAMQARK 127
                  5555555544312156677888889999999999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.88
# Mc/sec: 403.02
//
Query:       MMETSP0890-20130614|12053_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.9   0.6     0.0021   17.7   0.4    1.1  1  PF01923.13 Cobalamin adenosyltransferase
  ------ inclusion threshold ------
      0.032   12.7   0.3      0.037   12.5   0.2    1.0  1  PF00118.19 TCP-1/cpn60 chaperonin family
      0.033   11.9   0.9      0.034   11.8   0.6    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
      0.049   13.0   0.3      0.056   12.8   0.2    1.1  1  PF06530.7  Phage antitermination protein Q
      0.068   13.5   1.1       0.11   12.8   0.3    1.6  2  PF00416.17 Ribosomal protein S13/S18
      0.074   12.4   0.8      0.079   12.3   0.6    1.1  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
       0.12   12.1   0.2       0.86    9.3   0.1    2.3  2  PF13467.1  Ribbon-helix-helix domain
       0.12   11.6   0.1       0.21   10.8   0.1    1.4  1  PF04405.9  Domain of Unknown function (DUF542)
       0.15   12.5   0.7       0.17   12.3   0.5    1.2  1  PF03955.9  Adenovirus hexon-associated protein (IX)


Domain annotation for each model (and alignments):
>> PF01923.13  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4   1.4e-06    0.0021       8      73 ..      21      87 ..      18      90 .] 0.90

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.4e-06
                 ---EE-----EE-TTCHHHHH---HHHHHHH---GGGCS.TCCCHHHHHHHHHHHHHH--GTTS-TT CS
   PF01923.13  8 kGtTslvggervsKddprieayGtvDelnsaiglarsel.eeelkeeleriqeeLfdlgaelatpee 73
                 +GtT+ v  + ++Kdd+  +a+++   + s+  la   +  ++++++l+ ++++++d++ +la +++
  MMETSP0890-20130614|12053_1 21 DGTTHEVAASYLAKDDATTRAVAQKADVDSHEILAELSAsIKKVESQLSGMEQKMYDIEHNLARKTS 87
                 6******************************99999444469*********************8754 PP

>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.4e-05     0.037     376     435 ..       5      63 ..       4      84 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-05
   PF00118.19 376 aaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkk 435
                  a e++++k+++++ak+ +g    ++  +    +a  + +a+ a +d++e+la+l+a+ kk
  MMETSP0890-20130614|12053_1   5 ALEVAMFKEIKDMAKK-DGTTHEVAASYLAKDDATTRAVAQKADVDSHEILAELSASIKK 63 
                  689*******888886.5555555566666679*********************995533 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   2.2e-05     0.034      21     103 ..       5      88 ..       1      90 [] 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  21 afqrkfvnevrrldeverklrkle.seikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleel 103
                  a+++ +++e++++++ + ++  +  s + k+++ ++   +k dv++++ +++l ++++++e++l+ +e++   +e++l+ ++++
  MMETSP0890-20130614|12053_1   5 ALEVAMFKEIKDMAKKDGTTHEVAaSYLAKDDATTRAVAQKADVDSHEILAELSASIKKVESQLSGMEQKMYDIEHNLARKTSQ 88 
                  678889999999999999998876155667777777889999************************************999876 PP

>> PF06530.7  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.7e-05     0.056      57     116 ..      14      74 ..       8      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.7e-05
    PF06530.7  57 vdslkkkdkkllslllsyYvkg.sskraiarrrrvsearirkrLlkaeGfidgclsllavr 116
                  ++ + kkd +++++  sy +k   ++ra+a++  v++  i + L  +   ++  ls +  +
  MMETSP0890-20130614|12053_1  14 IKDMAKKDGTTHEVAASYLAKDdATTRAVAQKADVDSHEILAELSASIKKVESQLSGMEQK 74 
                  56788999***********9962679******************99999999998866655 PP

>> PF00416.17  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.5   2.4e+03      37      60 ..       8      20 ..       3      37 .. 0.53
   2 ?   12.8   0.3   7.5e-05      0.11      27      74 ..      38      89 ..      34      90 .] 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.5
                 --TTSB-----HHHHHHHSSGGGT CS
   PF00416.17 37 vdkekrvgelteeelekieeiven 60
                 v + k ++++++           +
  MMETSP0890-20130614|12053_1  8 VAMFKEIKDMAK-----------K 20
                 444444444443...........3 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHTT--TTSB-----HHHHHHHSSGGGT.....---STTHHHHHHHH CS
   PF00416.17 27 kanqilkkldvdkekrvgelteeelekieeiven.....ylvendlkrklred 74
                 +++ +++k+dvd+++ + el+   ++k+e +++      y++e +l rk+++d
  MMETSP0890-20130614|12053_1 38 TTRAVAQKADVDSHEILAELSA-SIKKVESQLSGmeqkmYDIEHNLARKTSQD 89
                 5689****************86.6999999998888899999****9999987 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   5.2e-05     0.079      73     143 ..      16      86 ..       3      90 .] 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-05
    PF07106.8  73 elnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeankevt 143
                  +++k d   +e+ +   +  +    + +++ +++s+   +el  +i++++ +++ +e+k+ +++++ +  t
  MMETSP0890-20130614|12053_1  16 DMAKKDGTTHEVAASYLAKDDATTRAVAQKADVDSHEILAELSASIKKVESQLSGMEQKMYDIEHNLARKT 86 
                  44444555777777777778888889999999***999*************************99876644 PP

>> PF13467.1  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00057      0.86      17      38 ..       5      26 ..       1      83 [. 0.84
   2 ?   -0.0   0.0      0.47   7.1e+02      18      34 ..      71      87 ..      69      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00057
    PF13467.1 17 rLEqafWdaLeeiAeeeglsva 38
                  LE a+++ ++++A+++g++ +
  MMETSP0890-20130614|12053_1  5 ALEVAMFKEIKDMAKKDGTTHE 26
                 79****************9865 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.47
    PF13467.1 18 LEqafWdaLeeiAeeeg 34
                 +Eq+++d+ +++A++ +
  MMETSP0890-20130614|12053_1 71 MEQKMYDIEHNLARKTS 87
                 89999999999998876 PP

>> PF04405.9  Domain of Unknown function (DUF542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00014      0.21      35      54 ..      40      59 ..      36      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
    PF04405.9 35 aeAckekgldleevlaeLea 54
                 +++++++++d +e+laeL a
  MMETSP0890-20130614|12053_1 40 RAVAQKADVDSHEILAELSA 59
                 6799**************87 PP

>> PF03955.9  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00011      0.17      55     108 ..      32      84 ..       8      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00011
    PF03955.9  55 aaaaastsaaaatarslaeeveslselkskvsaleekltvllaeLeelkqqlae 108
                   a+  +t++a+a+  ++ ++  +l el+++++++e +l+ +++++ +++++la+
  MMETSP0890-20130614|12053_1  32 LAKDDATTRAVAQKADVDSHE-ILAELSASIKKVESQLSGMEQKMYDIEHNLAR 84 
                  344555788887777776665.899999999999************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       976  (0.0713868); expected 273.4 (0.02)
Passed bias filter:                      663  (0.0484933); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.45s 00:00:00.85 Elapsed: 00:00:00.75
# Mc/sec: 287.56
//
Query:       MMETSP0890-20130614|12057_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-25   89.3   0.0    3.6e-25   88.9   0.0    1.1  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   2.6e-29   3.6e-25      19     233 ..      78     312 .]      53     312 .] 0.81

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 2.6e-29
                  ....EHHHHHHHHHHHH---EEEE---S----TTT--------....--------SSB........S--TT..-SSGGG----.......--SB-S-TTSSS----..EEEEEEE-------EEEB---HHHHHHHHHHHHHHT.TEEEEEE----SS-........--EEEEEESEEE-.........---EEEE---TT.....TB...-S---S-HHHHHHHHHHSTTT-EEE------EEEE CS
   PF02668.11  19 lsdededlaelrealaehgvvlfrglplspeqfeelarrfgpleqsprntfygetwdv........rsvka.nvkdaaytped...ttralplHtDlsylesppgv..qlLhclenpaeGGetlfvdgfaaynaLspelkella.egltyvysndgery...e...eespekrhPlvrth.........pvtgekvlyvnp.latkiqglvtlaeseellkaledhltdpeftyrhkwqeGdlvif 233
                  l+    +++++++ala hgv++++++pls  +++ l++++g+l   p ++f g   d         r  ++ + ++++         +   ++H D+ ++++  ++  ++L c + p+ GGet fvd  +a + L+p+lk++ a  ++t+  +  g+ +   +   ++++ ++hP++ t            +  ++lyv + ++   ++  t+++++ ll  ++dh+t+pe+ty h+w +Gd+vi+
  MMETSP0890-20130614|12057_1  78 LDT--DSVKRIHDALAAHGVIVLKNQPLSRREQVVLTSKLGQLVVLP-PSFEGL--DPepgipaiqR--ITsHWANSSW---KganHRLGGYFHQDGQFWPRSHRWinSILTCAQSPPFGGETGFVDLITAQKTLDPQLKARAAnATITASVRAIGDFRrglAedlDLFDDATHPMIDTWpgskaqtlaDAQDDRILYVGSpHMVVNEDS-TYQQESSLLPSIFDHVTRPEYTYYHTWSPGDVVIW 312
                  333..4899********************************994333.334332..22556677441..3332233333...233355679**********99999899**********************************966999988887777756515789999**********999999995559999999999777777788.9999999***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.74
# Mc/sec: 1010.36
//
Query:       MMETSP0890-20130614|12147_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.57
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|12222_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 203.69
//
Query:       MMETSP0890-20130614|12250_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 399.39
//
Query:       MMETSP0890-20130614|12288_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.0  14.7      0.015   14.7  10.2    2.1  1  PF13488.1  Glycine zipper
    0.00019   20.7  13.8     0.0074   15.6   9.6    2.1  1  PF13441.1  YMGG-like Gly-zipper
    0.00097   18.6  13.8      0.097   12.2   9.6    2.1  1  PF05433.10 Glycine zipper 2TM domain
     0.0098   15.4  11.3      0.023   14.2   7.8    1.6  1  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
  ------ inclusion threshold ------
       0.17   11.4   0.6        7.2    6.2   0.1    2.3  2  PF04210.8  Tetrahydromethanopterin S-methyltransferase, subunit G
       0.41   10.6  13.2        1.6    8.8   5.6    2.4  2  PF10439.4  Bacteriocin class II with double-glycine leader peptide
       0.58   10.1   3.6         18    5.4   2.5    2.3  1  PF04226.8  Transglycosylase associated protein
       0.98    9.5  10.9    1.6e+03   -0.8   7.5    3.0  1  PF10247.4  Reactive mitochondrial oxygen species modulator 1
        2.8    7.1   6.0          3    7.0   4.1    1.2  1  PF05818.7  Enterobacterial TraT complement resistance protein


Domain annotation for each model (and alignments):
>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7  10.2     1e-05     0.015       2      41 ..       2      40 ..       1      51 [. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1e-05
    PF13488.1  2 GaaiGAaaGAaiGaaaggagkGAliGAavGaaaGaliGay 41
                 Ga++G a+G  +Ga +g+ ++G  +G+avG  +G ++G  
  MMETSP0890-20130614|12288_1  2 GALVGTAVGTDVGAPVGQ-DVGVPVGTAVGSDVGTAVGED 40
                 888888888888888886.688888888888888888865 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   9.6   4.9e-06    0.0074       6      43 ..       2      38 ..       1      51 [. 0.66

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.9e-06
                 XXXXXXXXXXXXXXXXXXXX---------------TTH CS
    PF13441.1  6 GAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGgaag 43
                 GA++G+a+G  +Ga +G    G  +G+a+G  +G a+g
  MMETSP0890-20130614|12288_1  2 GALVGTAVGTDVGAPVG-QDVGVPVGTAVGSDVGTAVG 38
                 66666666666666666.55566666666666666655 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   9.6   6.4e-05     0.097       6      42 .]       2      38 ..       1      51 [. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.4e-05
   PF05433.10  6 GAaaGavaGaaigggggrllgavvGAaaGalaGnaig 42
                 GA++G ++G  +g++ g+ +g  vG a+G  +G+a+g
  MMETSP0890-20130614|12288_1  2 GALVGTAVGTDVGAPVGQDVGVPVGTAVGSDVGTAVG 38
                 9999999999999999999999999999999999887 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   7.8   1.5e-05     0.023      55      96 ..       2      42 ..       1      52 [] 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-05
    PF13436.1 55 gaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagag 96
                 ga+vG+avG  +ga +g+ + g+ +G a+G  vG+a+G   g
  MMETSP0890-20130614|12288_1  2 GALVGTAVGTDVGAPVGQ-DVGVPVGTAVGSDVGTAVGEDVG 42
                 899999999999999999.99999999999999999997655 PP

>> PF04210.8  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0047       7.2      38      56 ..      12      30 ..       3      32 .. 0.74
   2 ?    4.5   0.1     0.016        25      38      56 ..      32      50 ..      25      51 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0047
    PF04210.8 38 riGkkvGRDiGiLYGlviG 56
                  +G  vG D+G+  G  +G
  MMETSP0890-20130614|12288_1 12 DVGAPVGQDVGVPVGTAVG 30
                 5788889999988887776 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.016
    PF04210.8 38 riGkkvGRDiGiLYGlviG 56
                  +G  vG D+G   G  +G
  MMETSP0890-20130614|12288_1 32 DVGTAVGEDVGTPVGTAVG 50
                 4677788888876666665 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.6     0.001       1.6      32      62 ..       2      36 ..       1      39 [. 0.63
   2 ?    6.0   2.9    0.0075        11      36      57 ..      26      51 ..      25      52 .] 0.55

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.001
    PF10439.4 32 gaaaGalaGaatgga....vGglaGAlvGavvGai 62
                 ga+ G+++G+ +g++    vG ++G++vG  vG+ 
  MMETSP0890-20130614|12288_1  2 GALVGTAVGTDVGAPvgqdVGVPVGTAVGSDVGTA 36
                 34444444444444455559999999999999986 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0075
    PF10439.4 36 GalaGaatgga....vGglaGAlvGa 57
                 G+++G  +g+a    vG+++G++vG+
  MMETSP0890-20130614|12288_1 26 GTAVGSDVGTAvgedVGTPVGTAVGT 51
                 55566666666333366666666664 PP

>> PF04226.8  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.5     0.012        18       7      21 ..       2      19 ..       1      51 [. 0.66

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.012
    PF04226.8  7 GAfvGgfllgllGi...v 21
                 GA+vG++++  +G     
  MMETSP0890-20130614|12288_1  2 GALVGTAVGTDVGApvgQ 19
                 888888888888874332 PP

>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   7.5       1.1   1.6e+03      10      10 ..      22      22 ..       1      51 [. 0.56

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.1
    PF10247.4 10 G 10
                 G
  MMETSP0890-20130614|12288_1 22 G 22
                 1 PP

>> PF05818.7  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.1     0.002         3      89     127 ..       2      39 ..       1      51 [. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.002
    PF05818.7  89 gavagaalGaavgaynsgsagaavgvglagalvgtlada 127
                  ga++g+a+G+ vga  ++  g  vg +++g+ vgt++++
  MMETSP0890-20130614|12288_1   2 GALVGTAVGTDVGAPVGQDVGVPVG-TAVGSDVGTAVGE 39 
                  7888999999999888999999999.7777788887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       113  (0.00826507); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.83
# Mc/sec: 150.13
//
Query:       MMETSP0890-20130614|12333_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.6   1.1       0.16   11.5   0.8    1.1  1  PF10960.3 Protein of unknown function (DUF2762)
        3.1    7.2   6.8         13    5.2   0.1    2.9  3  PF08858.5 IDEAL domain


Domain annotation for each model (and alignments):
>> PF10960.3  Protein of unknown function (DUF2762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   2.3e-05      0.16      27      59 ..       9      41 ..       3      55 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.3e-05
    PF10960.3 27 lkenekreekqe...eREskyqqiIeeitdkleive 59
                 +k+ e+     +   eRE   +qiI e  + l+++e
  MMETSP0890-20130614|12333_1  9 QKKDEEHA---KilaEREAEINQIIAEKDNALATFE 41
                 34444444...3556************999999997 PP

>> PF08858.5  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0019        13      21      28 ..       7      14 ..       6      15 .. 0.93
   2 ?   -0.4   0.2      0.11   7.5e+02       8      23 ..      23      38 ..      19      41 .. 0.67
   3 ?    4.8   0.1    0.0025        17      21      28 ..      49      56 .]      48      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0019
    PF08858.5 21 ALdtrDke 28
                 AL+++D+e
  MMETSP0890-20130614|12333_1  7 ALQKKDEE 14
                 9******8 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.11
    PF08858.5  8 efrkekLlelIDlALd 23
                 e +++++ ++ D AL 
  MMETSP0890-20130614|12333_1 23 EAEINQIIAEKDNALA 38
                 5566666666677775 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0025
    PF08858.5 21 ALdtrDke 28
                 AL+++D+e
  MMETSP0890-20130614|12333_1 49 ALQKKDEE 56
                 9******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       753  (0.0550761); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.71
# Mc/sec: 189.01
//
Query:       MMETSP0890-20130614|12380_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   40.6   0.4    2.6e-10   39.6   0.1    1.6  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.19   11.9   0.1    1.2  1  PF06575.7  Protein of unknown function (DUF1132)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   3.8e-14   2.6e-10       1      39 []       7      45 ..       7      45 .. 0.97
   2 ?   -1.4   0.0      0.34   2.3e+03       9      19 ..      57      66 ..      49      67 .. 0.54

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3.8e-14
                 TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 g+ k+tl+gH++  ++v+fs dg++++ +S+D+t+r+Wd
  MMETSP0890-20130614|12380_1  7 GQIKRTLEGHSDDAEDVCFSADGTRVIYASDDKTVRIWD 45
                 5789**********************************9 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.34
                 SSSSSEEEEEE CS
   PF00400.27  9 gHtspVtcvaf 19
                    + V+ ++f
  MMETSP0890-20130614|12380_1 57 FN-DHVSTCDF 66
                 33.44555555 PP

>> PF06575.7  Protein of unknown function (DUF1132)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.7e-05      0.19      55      90 ..      32      66 ..      25      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.7e-05
    PF06575.7 55 kiyfsdesvifikeseenGkkikefefselvdssdf 90
                  iy sd+ ++ i +  ++G+ + ef+f++ v ++df
  MMETSP0890-20130614|12380_1 32 VIYASDDKTVRIWDA-QSGEVLSEFKFNDHVSTCDF 66
                 5999****9999865.68****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|12396_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-13   49.3   0.0    3.5e-13   49.2   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    3.4e-07   29.8   0.0    6.7e-07   28.8   0.0    1.4  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   5.1e-17   3.5e-13      18      68 ..       1      51 [.       1      53 [] 0.88

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 5.1e-17
    PF13306.1 18 tipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipss 68
                 t+p  +t+I++ aF++c+sl+++tl   lt+ig++aF++c+slt++t+p  
  MMETSP0890-20130614|12396_1  1 TLPAGLTTIDDAAFCGCRSLTQLTLRVGLTTIGRSAFQGCTSLTQVTLPAG 51
                 688999999999999999999999999999999999999999999999975 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   9.9e-11   6.7e-07      13      56 ..       6      48 ..       2      50 .. 0.95

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 9.9e-11
    PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 l++i+d aF g+ +L+ L L    l++i + af+g++sL+++ L
  MMETSP0890-20130614|12396_1  6 LTTIDDAAFCGCRSLTQLTLR-VGLTTIGRSAFQGCTSLTQVTL 48
                 99*******************.******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       127  (0.00928906); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:01.11
# Mc/sec: 114.42
//
Query:       MMETSP0890-20130614|12545_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.92
# Mc/sec: 138.05
//
Query:       MMETSP0890-20130614|12538_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-13   48.2   0.3    1.8e-12   46.9   0.2    1.8  1  PF04564.10 U-box domain
    1.2e-06   27.9   0.1      0.014   15.0   0.0    2.7  2  PF00514.18 Armadillo/beta-catenin-like repeat
    6.8e-05   22.2   0.1    0.00018   20.8   0.0    1.7  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00016   20.9   0.5    0.00067   19.0   0.1    2.1  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.063   12.7   0.0       0.22   10.9   0.0    1.9  1  PF14394.1  Domain of unknown function (DUF4423)


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.2   6.4e-16   1.8e-12       2      71 ..     246     318 ..     245     320 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 6.4e-16
                  -GGGB-TTT-SB-SSEEE-.TTT.-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHC CS
   PF04564.10   2 PdefldpitlelmkdPvil.Psg.itvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfleek 71 
                  P ef++pit+ lm dPv l  ++ ++++r+++ek+l+++ + dP+t +  l+      n  lK kI+ + +e+
  MMETSP0890-20130614|12538_1 246 PSEFICPITRDLMEDPVTLfTEShQSYERTALEKFLDQHPCRDPMTnVDSLEPLIFGTNKHLKSKIELWKAEH 318
                  89***************8745567**********************8999********************998 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00017      0.48       3      39 ..     364     400 ..     362     402 .. 0.79
   2 !   15.0   0.0   5.3e-06     0.014       2      24 ..     404     426 ..     403     427 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
                  HHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHH CS
   PF00514.18   3 enkqavieaGavppLvqLLksgdeevqeeAawALsNL 39 
                  +nk + + +G ++pLv++L+++d +  e+Aa +L  L
  MMETSP0890-20130614|12538_1 364 PNKVTARVCGTIDPLVKMLNNNDGREAEVAAKTLLKL 400
                  57888889************99977777777666655 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.3e-06
                  HHHHHHHHHCHHHHHHHHHHC-S CS
   PF00514.18   2 penkqavieaGavppLvqLLksg 24 
                  ++n  a+ +aGa++pL++LL+sg
  MMETSP0890-20130614|12538_1 404 DDNQIAIANAGAIQPLIALLSSG 426
                  68999***************985 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.7e-08   0.00018       8      45 ..     246     282 ..     237     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.7e-08
                  XXX-B-TTT-S.-SS....EEE.ES.---EEEHHHHHHHHH CS
    PF13445.1   8 hsifaCpiske.qsteqnpPvv.Lp.CGhvisrealeklak 45 
                   s f+Cpi+++ + +    Pv+ ++     ++r alek++ 
  MMETSP0890-20130614|12538_1 246 PSEFICPITRDlMED----PVTlFTeSHQSYERTALEKFLD 282
                  699**********88....**625589************98 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.68   1.8e+03       3      22 ..     209     228 ..     207     229 .. 0.77
   2 !   19.0   0.1   2.5e-07   0.00067      12      48 ..     249     286 ..     244     294 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.68
                  XXXXXXXXX-B-TTT-SB-S CS
    PF11789.3   3 laveeerislkCpltlkpfk 22 
                  l  ++e ++++C l+l  ++
  MMETSP0890-20130614|12538_1 209 LFADKELLEKVCNLSLLDIH 228
                  6667889999****998765 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.5e-07
                  -B-TTT-SB-SSEEEES----.EEEHHHHHHHHTTT-- CS
    PF11789.3  12 lkCpltlkpfkePvtskkCnH.vFEkeaIlkmlkrkkk 48 
                    Cp+t++ +++Pvt  +  H ++E++a++k+l+++ +
  MMETSP0890-20130614|12538_1 249 FICPITRDLMEDPVTLFTESHqSYERTALEKFLDQHPC 286
                  57*************98776658**********77655 PP

>> PF14394.1  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     8e-05      0.22      85     123 ..     118     156 ..     110     160 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8e-05
    PF14394.1  85 slttssevpseavrslhkqmlelAkealdrvpkeeRdvs 123
                   l++s+ ++s   +++ ++ +e+A e l+++p++ Rd+ 
  MMETSP0890-20130614|12538_1 118 LLSGSHAATSFEFQNYARKAMERANETLENLPDQIRDIV 156
                  68999*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      630  (0.0460796); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.42s 00:00:01.25 Elapsed: 00:00:00.98
# Mc/sec: 1046.57
//
Query:       MMETSP0890-20130614|12554_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.85
# Mc/sec: 166.34
//
Query:       MMETSP0890-20130614|12605_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   13.3  32.5       0.65   10.1  15.0    2.2  2  PF11759.3 Keratin-associated matrix


Domain annotation for each model (and alignments):
>> PF11759.3  Keratin-associated matrix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.9   5.5e-05      0.75      11      58 ..       2      49 ..       1      53 [. 0.53
   2 ?   10.1  15.0   4.8e-05      0.65      10      53 ..      31      76 ..      30      82 .] 0.61

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.5e-05
    PF11759.3 11 lgygsggyG.glGcgygCgygsirrlGyGsgfggyGsGsGYG...GyGygcg 58
                 +g+   g G  +G+g+g+      r G+Gsg  g G GsG G   G+G g g
  MMETSP0890-20130614|12605_1  2 VGF---GVGaDVGLGVGSDVAIGVRTGVGSG-VGIGIGSGVGidvGFGVGTG 49
                 344...4455666666666666688888887.55555555555144444433 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 4.8e-05
    PF11759.3 10 glgygsggyG.glGcgygCgygsirrlGyGsg.fggyGsGsGYG.Gy 53
                 g+g gs g G  +G+g+g g gs  + G+G g ++g G G+G+G G 
  MMETSP0890-20130614|12605_1 31 GIGIGS-GVGiDVGFGVGTGVGSDVGTGVGLGvGTGVGTGVGFGvGA 76
                 344444.8888999999999997766666655335555566666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.77
# Mc/sec: 255.20
//
Query:       MMETSP0890-20130614|12751_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 247.76
//
Query:       MMETSP0890-20130614|12800_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 256.75
//
Query:       MMETSP0890-20130614|12805_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.72
# Mc/sec: 209.68
//
Query:       MMETSP0890-20130614|12807_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.28s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 161.29
//
Query:       MMETSP0890-20130614|12810_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-07   29.8   0.0    6.8e-07   28.8   0.0    1.5  1  PF00782.15 Dual specificity phosphatase, catalytic domain
     0.0011   18.2   0.0     0.0016   17.7   0.0    1.2  1  PF00102.22 Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     1e-10   6.8e-07      73     129 ..     155     216 ..     143     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1e-10
                  ---EEEE-----HHHHHHHHH.....HHHHHCT-HHHHHHHHHHHHSTT-SS-STTHHHHHH CS
   PF00782.15  73 gkkvlVHCqaGisRSatliia.....YlmktknlslneAyefvkerrskispnagflrqLle 129
                   +  lVHC  G sRS t+++a     +l + ++  l +A+  v +rr++ spn gf   Ll+
  MMETSP0890-20130614|12810_1 155 SGPTLVHCVQGRSRSVTVAVAilttiFLQQDHSDALAQAWLTVTRRRPQASPNLGFRLALLK 216
                  6889***********9999883333355556666889999999*************988865 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.3e-07    0.0016     167     220 ..     152     204 ..     122     210 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.3e-07
                  STTSS-EEEES------HHHHHHHHHHHHHHHHT--TBEHHHHHHHHHTTSTTS CS
   PF00102.22 167 taksgpvvVhCsaGvgRtgtfvaldilleqleaeeekvdvlqivkelRkqRpgm 220
                  t+ sgp++VhC +G +R+ t++++ +    l+++++   + q++ ++ ++Rp++
  MMETSP0890-20130614|12810_1 152 TSISGPTLVHCVQGRSRSVTVAVAILTTIFLQQDHS-DALAQAWLTVTRRRPQA 204
                  56789*************888777777666666444.88999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.94
# Mc/sec: 711.26
//
Query:       MMETSP0890-20130614|12808_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-59  200.5   0.0    2.6e-59  200.4   0.0    1.0  1  PF00069.20 Protein kinase domain
    5.7e-27   94.3   0.0    6.6e-27   94.1   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
    7.8e-05   22.3   0.0       0.03   13.9   0.0    2.2  2  PF01636.18 Phosphotransferase enzyme family
     0.0013   17.7   0.1     0.0019   17.1   0.1    1.2  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.026   13.7   0.1      0.051   12.8   0.0    1.4  2  PF10707.4  PhoP regulatory network protein YrbL


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   0.0   9.3e-63   2.6e-59       4     259 ..      26     294 .]      23     294 .] 0.95

  Alignments for each domain:
  == domain 1    score: 200.4 bits;  conditional E-value: 9.3e-63
                  EEEEE----EEEEEEEETTCCE.....EEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.H-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE..TT--EEE------EEECEESS-CSS----GGGS-HHHHH.......TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGG CS
   PF00069.20   4 leklGsGsfGkVykakkkktgk.....kvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld..kkgelkiaDFGlakkleksseklttlvgtreYmAPEvll.......kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259
                  + +lG G++++Vy ak k+ +      ++AvK+ +k ++ s+++ +  +E ++l++l   p +v+ +++++e+++ ylvley++gg+lf+ + ++++++e e++++a+++l+ ++ lH ++++HrD+KpeN+L+   +++++k+aDFG+a  l+  +   ++  gt+ Y+APEv+            y+  +D+Ws+Gv++y ll g +pf +++ + ++++++ i + + ++d + +++ s+e+k+l+++ll+  p+kRl+a+ +l+h+w
  MMETSP0890-20130614|12808_1  26 GTELGFGTYSQVYLAKLKNGEGssssgMYAVKVAEKCDKASNESLE--KEWEVLRRLqGMPGVVQAYDFVREESQSYLVLEYMQGGELFERIIERERYTEIEARECAQNLLSIVRNLHAKNVVHRDIKPENLLCIaaESDQIKLADFGSAMILNDADAPIEEAAGTELYLAPEVIHflyrpkeAPMCYGVGSDMWSCGVVIYVLLAGYPPFANDEGKVDQAVVDDIIHARFDFDDEVWDDVSSEAKSLVSSLLQVSPKKRLSATAALNHSW 294
                  5789***********998877678899**************98754..6********55899*******************************9***************************************86569999*********999*********************99999998667779*********************************************************************************99 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   2.4e-30   6.6e-27       3     208 ..      25     236 ..      23     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 2.4e-30
                  EEEEE-------EEEEEEET.TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT.-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE..ETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE........EEHHHHHHH---HHHHHHTTT-GTTTT CS
   PF07714.12   3 lgkklGeGafGkVvegtlkg.ekekkevkVavKtlkesaeeeekeefleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLl..eeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk........ftsksDvWsfGvllwEiftlgespypg 208
                   g +lG G++++V+ ++lk+ e ++++   avK+ + + ++ ++e++ +e +++++l   p +v+ + ++ +e++ ++v+ey++gG+L e + ++  e+ t  +  ++a+++ + ++ L++k++vHrd+   N L   +e++++k++DfG a  +  +d     eea     ++apE+++           + + sD+Ws Gv+++ ++  g  p+++
  MMETSP0890-20130614|12808_1  25 HGTELGFGTYSQVYLAKLKNgEGSSSSGMYAVKVAE-KCDKASNESLEKEWEVLRRLqGMPGVVQAYDFVREESQSYLVLEYMQGGELFERIIER--ERYTEIEARECAQNLLSIVRNLHAKNVVHRDIKPENLLCiaAESDQIKLADFGSAMIL--NDADAPIEEAAGTELYLAPEVIHFLYrpkeapmcYGVGSDMWSCGVVIYVLLA-GYPPFAN 236
                  5789***************999999999******95.5555569*************999******************************99997..8889999999**************************886225688********99888..444455566777778*******998889999******************9988.7777765 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0012       3.2       2      81 ..      26     110 ..      25     123 .. 0.76
   2 !   13.9   0.0   1.1e-05      0.03     145     197 ..     118     175 ..     109     176 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0012
                  EEEEE--SSEEEEEEEETT........TEEEEEESSC..CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHB CS
   PF01636.18   2 vrelsgGasnrtyrvttgag.......ryvlrrarpa..raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgev 81 
                   +el+ G+++++y+ + ++g        y++++a +   ++ e+l++e ++lr+L + +  v + +++ + + +++l+ + + +     
  MMETSP0890-20130614|12808_1  26 GTELGFGTYSQVYLAKLKNGegssssgMYAVKVAEKCdkASNESLEKEWEVLRRLQGMPG-VVQAYDFVREESQSYLVLEYMQG---GE 110
                  5788889999999999555334555669*****777777799****************99.88****98888888875555554...33 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.1e-05
                  HHHHHHH...HHHHHHHHHHC....SS--EEB-SS-SGGGEEEE.TTTTEEEE---TT-BB CS
   PF01636.18 145 leeleer...vlaalaallpg....aeppvllHgDlhpgNllvd.pddgrvgviDfedagl 197
                  +e+        ++++a++l++      ++ ++H+D++p Nll   ++ +++ + Df+ a++
  MMETSP0890-20130614|12808_1 118 RER---YteiEARECAQNLLSivrnLHAKNVVHRDIKPENLLCIaAESDQIKLADFGSAMI 175
                  333...2444888999999999999*****************9986666666889998885 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     7e-07    0.0019      60     166 ..      72     171 ..      63     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7e-07
    PF06293.9  60 rEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                  +E+++l+rL+      +  v  a+  v  e q+ l+ e ++g +  + i+++ + + e   r+  +++ + ++++h+ +v H+d+ + n+l  + e   ++ l D+ 
  MMETSP0890-20130614|12808_1  72 KEWEVLRRLQ-----GMPGVVQAYDFVREESQSYLVLEYMQGGELFERIIER-ERYTEIEARECAQNLLSIVRNLHAKNVVHRDIKPENLLCIAAE-SDQIKLADFG 171
                  5666666664.....3445555666677789*******************97.779999********************************99996.7888888885 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7   4.6e+03     100     128 ..      43      71 ..      27      79 .. 0.57
   2 ?   12.8   0.0   1.9e-05     0.051     115     163 ..     120     167 ..     103     177 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.7
    PF10707.4 100 rdadGnvsetLeellkedgltaalaeaLe 128
                  ++ +G+ s  ++++  ++++++a  e+Le
  MMETSP0890-20130614|12808_1  43 KNGEGSSSSGMYAVKVAEKCDKASNESLE 71 
                  44556666666666666666666666665 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.9e-05
    PF10707.4 115 kedglta.alaeaLeefleallenrIvardlkpknivvgrrsegeeelvl 163
                  ++ +++a + a+ L  +++ l ++++v rd+kp+n+++   ++++  + l
  MMETSP0890-20130614|12808_1 120 RYTEIEArECAQNLLSIVRNLHAKNVVHRDIKPENLLCIAAESDQ--IKL 167
                  556666668899999***********************9988877..555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 859.18
//
Query:       MMETSP0890-20130614|12814_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-62  208.7   0.8    3.5e-62  208.4   0.6    1.1  1  PF00071.17 Ras family
      1e-23   83.9   0.1    1.9e-23   83.0   0.0    1.5  2  PF08477.8  Miro-like protein
    3.6e-19   68.5   0.1    4.5e-19   68.2   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    6.2e-07   28.6   0.1    7.6e-07   28.4   0.1    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
    8.3e-07   28.5   0.3    3.2e-06   26.5   0.2    1.8  1  PF00009.22 Elongation factor Tu GTP binding domain
    6.4e-05   22.1   0.1    8.2e-05   21.7   0.1    1.2  1  PF09439.5  Signal recognition particle receptor beta subunit
    0.00081   18.5   0.2     0.0039   16.3   0.1    1.8  1  PF02421.13 Ferrous iron transport protein B
     0.0016   18.3   0.0     0.0024   17.7   0.0    1.3  1  PF01926.18 50S ribosome-binding GTPase
     0.0096   15.3   0.2      0.029   13.7   0.2    2.0  1  PF10662.4  Ethanolamine utilisation - propanediol utilisation
  ------ inclusion threshold ------
      0.029   13.0   0.1       0.59    8.7   0.0    2.0  2  PF00493.18 MCM2/3/5 family
      0.047   13.6   0.0       0.16   11.9   0.0    1.9  1  PF13401.1  AAA domain
      0.061   12.8   0.0      0.085   12.3   0.0    1.3  1  PF04146.10 YT521-B-like domain
      0.095   12.9   0.2       0.46   10.7   0.1    2.3  1  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.4   0.6   3.3e-65   3.5e-62       1     161 [.      14     174 ..      14     175 .. 0.99

  Alignments for each domain:
  == domain 1    score: 208.4 bits;  conditional E-value: 3.3e-65
                  EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
   PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                  Kl+++GdsavGKtslllr+ +d+F++++++Tig+df++k+i++dgk+vkl+iwDTAGqe+f++++++y+r+a+gi+lvyd+t+r +f++v++w+++i ++a+ +v+ +L+GnK+D e  r+v  eeg++la+e+g++f+etSAk++ nv+e f +++r+++
  MMETSP0890-20130614|12814_1  14 KLLMIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTIDLDGKRVKLQIWDTAGQEQFRTITRSYFRGAQGIVLVYDVTDRGTFNSVRSWMSQIADHADAQVNRILIGNKCDNEAARQVAVEEGQRLAEEYGVQFFETSAKNDLNVTESFIAIARQAK 174
                  89****************************************************************************************************99*****************************************************9975 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   1.8e-26   1.9e-23       1     119 []      14     128 ..      14     128 .. 0.94
   2 ?   -2.5   0.0       5.9   6.2e+03      96      96 ..     174     174 ..     144     196 .. 0.54

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 1.8e-26
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                  k++ +Gd+ vGK+sll +++ ++f+  ++   ++g +  +kt+ +d+++ +l++wd++g+e++       ++ a++i+lvyd+td+ ++++v++ ++++a  ++   +++ il+gnk+D
  MMETSP0890-20130614|12814_1  14 KLLMIGDSAVGKTSLLLRYANDTFS--STFITTIGIDFKIKTIDLDGKRVKLQIWDTAGQEQFRTITRSYFRGAQGIVLVYDVTDRGTFNSVRSWMSQIADHAD--AQVNRILIGNKCD 128
                  7789*********************..**************************************88888**********************888888877774..67**********9 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.9
    PF08477.8  96 l 96 
                  +
  MMETSP0890-20130614|12814_1 174 K 174
                  1 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.3e-22   4.5e-19      14     160 ..      12     158 ..       3     173 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 4.3e-22
                  EEEEEEE--TT---HHHHHHHHHS-EEE.E-S--S..-EEEEEEE..TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTT CS
   PF00025.16  14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavk 160
                  ++++l++G  + GKt +l ++ ++ +++  + Tig  f+++++    k +k+++wD  Gqe+ R + ++Yf+  ++++ v D++dr  +++ ++ ++++ ++ +  +v  ++++NK D + a +   ++e   l e   +  ++ +++sa +
  MMETSP0890-20130614|12814_1  12 QIKLLMIGDSAVGKTSLLLRYANDTFSStFITTIGidFKIKTIDLdgKRVKLQIWDTAGQEQFRTITRSYFRGAQGIVLVYDVTDRGTFNSVRSWMSQIADHADA-QVNRILIGNKCDNEAARQ-VAVEEGQRLAE---EYGVQFFETSAKN 158
                  79******99***************987345666533889998776699*************************************************9888775.5666777*****876654.44554444333...3344455555544 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   7.2e-10   7.6e-07       1     159 [.      14     156 ..      14     198 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7.2e-10
    PF04670.7   1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflg.nlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvli.hKmDlisedereeifeerkeeireeiedleieeleffaTSi 159
                  klL++G s  GKtS+    ++n     t   ++ id + +++ + g  +kl++wD+ Gqe+f + +      + f+  + ++ V D++  + + ++++ ++ ++++ ++   +   +li +K D  +e +r+ ++ee +    + +e+++   ++ff+TS+
  MMETSP0890-20130614|12814_1  14 KLLMIGDSAVGKTSLLL-RYANDTFSSTFITTIGIDFKIKTIDLDGkRVKLQIWDTAGQEQFRTIT-----RSYFRGAQGIVLVYDVT--D-RGTFNSVRSWMSQIADHADAQVNRILIgNKCD--NEAARQVAVEEGQ----RLAEEYG---VQFFETSA 156
                  89************754.4666666666666666666666666554169**********9998885.....899**************..4.67899999999999999888888888867888..3445544444443....3344445...66666665 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   3.1e-09   3.2e-06      53     181 ..      46     168 ..      11     175 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3.1e-09
                  --BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-.....S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHH CS
   PF00009.22  53 giTiksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLlea 181
                  gi  k+++i+l+  +k+ ++++ Dt G ++F   + +  r + g vlv d+++      v +   +++ +a+  +v++i++ NK+D+  a  +++  e  ++l e+y+      v+++ +Sa++  ++ + + a
  MMETSP0890-20130614|12814_1  46 GIDFKIKTIDLD--GKRVKLQIWDTAGQEQFRTITRSYFRGAQGIVLVYDVTDRgtfnsVRSWMSQIADHAD-AQVNRILIGNKCDNEAA--RQVAVEEGQRLAEEYG------VQFFETSAKNDLNVTESFIA 168
                  666778888888..*****************9999999*************976444444433444444443.5788*********8544..3444444447867773......56899999998888765555 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   7.8e-08   8.2e-05       5     132 ..      14     137 ..      11     197 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 7.8e-08
                  EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-.....-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHH CS
    PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspkl 132
                  ++l++G s  GKTsl+ r  +d++ +t +      +  k+   + k  kl++ D  G+e++r+       + + ++g+v v D t d    ++v  ++ +i+ +     +   ili  nK +   a++  +
  MMETSP0890-20130614|12814_1  14 KLLMIGDSAVGKTSLLLRYANDTFSSTFITTiGIDFKIKTidLDGKRVKLQIWDTAGQEQFRTITRS---YFRGAQGIVLVYDVT-DRGTFNSVRSWMSQIADHADA--QVNRILI-GNKCDNEAARQVAV 137
                  689*******************9999987664555555552346677788999*********84433...6889********987.778899999999999887773..4444555.58888888887654 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.7e-06    0.0039       2     177 ..      14     185 ..      13     197 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.7e-06
                  EEEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHHHH-.-SEEEEEEEGGGHHHHHHHHHHH...HHTT-SEEEEEETHHHHHC---EB-H.HHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX..XXX.HHHH CS
   PF02421.13   2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardylleek.pdviinvvDasnlernLyLtlql...lelgvpvvvalnmiDeaekkgikidl.kkLselLgvpvvktvarkkkgieelleaiievaekeekekkllkyseele 177
                  ++ ++G+  vGKt+l+ + ++ + +    + + ++ k  +++l+gk+v++     i++     +  +++r+y+   +   ++ +v D    +     + q+    + +v+ +++ n++D+  ++++ ++  ++L+e+ gv+ ++t+a++  ++ e + ai+++a+++ +++      ++++
  MMETSP0890-20130614|12814_1  14 KLLMIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTIDLDGKRVKLQ----IWDTAGQEQFRTITRSYFRGAQgIVLVYDVTDRGTFNSVRSWMSQIadhADAQVNRILIGNKCDNEAARQVAVEEgQRLAEEYGVQFFETSAKNDLNVTESFIAIARQAKARLPSES-----SNTN 185
                  667899999999999999999888888888888888888888888776654....55555566667788888874441445557777766655555555551116789999********99999999976378**********************99999988887654443.....2333 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.3e-06    0.0024       3      98 ..      16     103 ..      14     140 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.3e-06
                  EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SE.EEE..ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTS..HHHHHHHHH CS
   PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrdi.te.nev..kkek...iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasa..vlkeadkel 98 
                   ++G + vGK++L+ +  ++     s +  tT  i  + +++  +  k   ++++Dt+G           e+++ ++++  + a++++lv d+++  +     + +
  MMETSP0890-20130614|12814_1  16 LMIGDSAVGKTSLLLRYAND---TFSSTFITTIGIdFKiKTIdlDG-KrvkLQIWDTAG----------QEQFRTITRSYfRGAQGIVLVYDVTDrgT----FNSV 103
                  689**************974...34555555555532224443322.234468******..........23677788888899999***999544231....2222 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   2.8e-05     0.029       3      52 ..      14      65 ..      12     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.8e-05
    PF10662.4  3 killiGkvgaGKTtLtqalkgeel..kykkTQaielseeviDtPGeYlenrr 52
                 k+l+iG + +GKT+L  +  +++   ++  T  i+++ ++iD  G+ ++ + 
  MMETSP0890-20130614|12814_1 14 KLLMIGDSAVGKTSLLLRYANDTFssTFITTIGIDFKIKTIDLDGKRVKLQI 65
                 899*************999998884457789999999999**9998776555 PP

>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00057      0.59      57      88 ..      12      44 ..       5      48 .. 0.77
   2 ?    2.4   0.0     0.048        50     209     269 ..     111     184 ..      99     201 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00057
   PF00493.18 57 dinvllvGdpgtaKSql.Lkyveklapravyts 88
                 +i +l++Gd++++K+ l L+y++++ + + +t+
  MMETSP0890-20130614|12814_1 12 QIKLLMIGDSAVGKTSLlLRYANDTFSSTFITT 44
                 699***********8761567777666666555 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.048
   PF00493.18 209 deekDeelaehvvklhakkekeaeeekekee..............keidkellrkYiayarekikPklseeakek 269
                   ++ D+++ + ++ ++ ++e++++ ++e+ +               + d ++ +++ia+ar + k +l +e++++
  MMETSP0890-20130614|12814_1 111 ADHADAQVNRILIGNKCDNEAARQVAVEEGQrlaeeygvqffetsAKNDLNVTESFIAIAR-QAKARLPSESSNT 184
                  556777888877777777765333333333355566677777777678899999*******.9999998877654 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.16       8      37 ..      16      57 ..      14     152 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00016
    PF13401.1  8 vvtGesGvGKTtllrrlarqldeeaeaae............k 37
                 + +G s vGKT ll r+a++     ++++            +
  MMETSP0890-20130614|12814_1 16 LMIGDSAVGKTSLLLRYANDTFSSTFITTigidfkiktidlD 57
                 679****************98777776667776633333331 PP

>> PF04146.10  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.1e-05     0.085      19      70 ..      61     138 ..      50     197 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.1e-05
   PF04146.10  19 vktgiWat..qshnekkldkafkeaenVyLiFsvnksgeffGyArmispidee........................r 70 
                  vk +iW t  q++   + +++f+ a+ ++L++ v++ g+f  +   +s+i ++                        +
  MMETSP0890-20130614|12814_1  61 VKLQIWDTagQEQFRTITRSYFRGAQGIVLVYDVTDRGTFNSVRSWMSQIADHadaqvnrilignkcdneaarqvavE 138
                  67799988335666689999***********************99999998874555444444444444444444440 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00044      0.46      26      42 ..      15      31 ..       2     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00044
    PF13191.1 26 llvtGpsGiGKSsLlre 42
                 ll +G+s +GK+sLl +
  MMETSP0890-20130614|12814_1 15 LLMIGDSAVGKTSLLLR 31
                 899***********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       670  (0.0490053); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.73
# Mc/sec: 669.67
//
Query:       MMETSP0890-20130614|12906_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   52.3   0.0    4.2e-14   52.2   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    0.00018   21.0   0.0    0.00028   20.4   0.0    1.3  1  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   6.1e-18   4.2e-14       3      49 ..       2      48 ..       1      49 [] 0.80

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 6.1e-18
    PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpssltei 49
                 I++yaF +c++lt++t+p  +++Ig++aF++c+sl++itlp  lt+i
  MMETSP0890-20130614|12906_1  2 IRAYAFDDCTSLTQLTLPAGLITIGNSAFRGCTSLTQITLPAGLTTI 48
                 77888888888888888888888888888888888888888888887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.1e-08   0.00028      16      56 ..       2      41 ..       1      43 [. 0.93

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.1e-08
    PF13855.1 16 ipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 i+  aF ++++L+ L L    l++i   af g++sL+++ L
  MMETSP0890-20130614|12906_1  2 IRAYAFDDCTSLTQLTLP-AGLITIGNSAFRGCTSLTQITL 41
                 67789*************.9999**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       114  (0.00833821); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.33s 00:00:00.62 Elapsed: 00:00:00.60
# Mc/sec: 195.70
//
Query:       MMETSP0890-20130614|13054_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-05   21.9   0.4    0.00042   19.9   0.0    1.9  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.064   12.2   0.0      0.069   12.1   0.0    1.0  1  PF04826.8  Armadillo-like


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.078   5.4e+02      30      40 ..      11      21 ..       3      22 .. 0.82
   2 !   19.9   0.0   6.1e-08   0.00042       1      24 [.      23      46 ..      23      57 .] 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.078
                 HHHHHHHHHHH CS
   PF00514.18 30 eeAawALsNLa 40
                 e Aa++L+ La
  MMETSP0890-20130614|13054_1 11 EKAAGVLCDLA 21
                 67999998887 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 6.1e-08
                 CHHHHHHHHHCHHHHHHHHHHC-S CS
   PF00514.18  1 spenkqavieaGavppLvqLLksg 24
                 ++ n  a+ eaGa+ pL++LL+sg
  MMETSP0890-20130614|13054_1 23 NDLNQVAIAEAGAISPLIDLLNSG 46
                 5678999***************97 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     1e-05     0.069      27      75 ..       7      55 ..       2      57 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1e-05
    PF04826.8 27 pliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekal 75
                  + +e+a  +l+  aa  +nq  i e g i+ + +ll++  +  kekal
  MMETSP0890-20130614|13054_1  7 AIAKEKAAGVLCDLAANDLNQVAIAEAGAISPLIDLLNSGTAIAKEKAL 55
                 567899******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 184.58
//
Query:       MMETSP0890-20130614|13050_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   27.9   0.0    2.7e-06   27.0   0.0    1.5  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
      0.016   15.4   0.0      0.082   13.1   0.0    2.1  2  PF13517.1  Family description
      0.018   14.8   0.0      0.056   13.2   0.0    1.8  1  PF01556.13 DnaJ C terminal domain
      0.026   14.1   0.3      0.026   14.1   0.2    2.3  2  PF01839.18 FG-GAP repeat


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.9e-10   2.7e-06       4      82 ..      11      89 ..       8      92 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7.9e-10
                 EEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-.SSEEEEEEEEEEESCGGGTE.EEEEEEECHSSSC.SEE-- CS
   PF00168.25  4 kvieAknLpnkdkngtsdpyvkvslggakskkkrTrviknt.lnPvWnekftfevvaeelae.leleVkdedrfgk.ddflG 82
                 + ie+++L + d  ++ dpyv  ++g    k+ +T+ ++    + v+ +k+++ v++++la  l ++ +d+d+    dd+lG
  MMETSP0890-20130614|13050_1 11 SNIECHGLRDADFLSKNDPYVIFKVGA---KSVKTKYKSGAgKDVVFPDKLEMIVSDADLAAgLDITAYDYDVGPDpDDLLG 89
                 679************************...668***************************************9987788888 PP

>> PF13517.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.87     3e+03      18      41 ..     112     135 ..      85     144 .. 0.68
   2 ?   13.1   0.0   2.4e-05     0.082      43      61 .]     215     233 ..     190     233 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.87
    PF13517.1  18 lrlylnngdGtftdvaetslgagg 41 
                  +  y +++ Gt++ + +++++ gg
  MMETSP0890-20130614|13050_1 112 ILMYKGRNRGTVSSILTITFPHGG 135
                  455777777887777666666655 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.4e-05
    PF13517.1  43 gtgvafgDldgDGdlDllv 61 
                  +   ++ D+dgDG++D+++
  MMETSP0890-20130614|13050_1 215 PIPGYAIDVDGDGKPDYYI 233
                  3346899*********985 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.056      11      46 ..     171     206 ..     169     208 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   PF01556.13  11 keAllGgtvevptldgrkikvkippgtkpgeklrik 46 
                  ++A  G +v+v+ ++g+ ++v ip+g++pg  +r++
  MMETSP0890-20130614|13050_1 171 TNATAGMQVTVQAPSGQCLTVVIPQGVSPGGNFRVP 206
                  7899**************************999986 PP

>> PF01839.18  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.35   1.2e+03      15      22 ..      64      76 ..      63      93 .. 0.70
   2 ?   14.1   0.2   7.5e-06     0.026       9      20 ..     222     233 ..     216     243 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.35
                 S-EEEEE.....T CS
   PF01839.18 15 rpDlavG.....p 22
                 ++Dla+G     +
  MMETSP0890-20130614|13050_1 64 DADLAAGlditaY 76
                 5899998666542 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 7.5e-06
                  -TT---S-EEEE CS
   PF01839.18   9 DfnGDGrpDlav 20 
                  D++GDG+pD ++
  MMETSP0890-20130614|13050_1 222 DVDGDGKPDYYI 233
                  *********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.77
# Mc/sec: 774.93
//
Query:       MMETSP0890-20130614|13157_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.76
# Mc/sec: 126.12
//
Query:       MMETSP0890-20130614|13170_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-09   35.6   0.0    4.4e-09   35.6   0.0    2.1  2  PF00584.15 SecE/Sec61-gamma subunits of protein translocation complex
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.25   11.0   0.0    1.5  1  PF05745.6  Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)


Domain annotation for each model (and alignments):
>> PF00584.15  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.1      0.14   9.8e+02      29      38 ..       6      15 ..       2      19 .. 0.63
   2 !   35.6   0.0   6.4e-13   4.4e-09       6      53 ..     132     179 ..     129     183 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.14
   PF00584.15 29 vvVlvfvlvm 38
                 vvVl+fv++ 
  MMETSP0890-20130614|13170_1  6 VVVLFFVVLA 15
                 5666666654 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 6.4e-13
   PF00584.15   6 fkevkaElkKVvWPtrketlkstvvVlvfvlvmalflwlvDlvfswlv 53 
                  f ++ +E+k V WPt +etl+s ++Vlv+ ++   ++ l+D ++++++
  MMETSP0890-20130614|13170_1 132 FEGAMKEFKLVEWPTPQETLQSLGIVLVIATIAVGYVLLLDRGLQFAL 179
                  778899**************************************9987 PP

>> PF05745.6  Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.7e-05      0.25      52      86 ..     135     169 ..      99     177 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.7e-05
    PF05745.6  52 pireskllqsrafkitlvvlGilLviaglallfil 86 
                   ++e kl++    + tl  lGi+Lvia++a+ ++l
  MMETSP0890-20130614|13170_1 135 AMKEFKLVEWPTPQETLQSLGIVLVIATIAVGYVL 169
                  578889999999999***************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.34s 00:00:00.83 Elapsed: 00:00:00.70
# Mc/sec: 643.59
//
Query:       MMETSP0890-20130614|13193_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.77
# Mc/sec: 245.86
//
Query:       MMETSP0890-20130614|13200_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1953  (0.142847); expected 273.4 (0.02)
Passed bias filter:                      486  (0.0355471); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.74
# Mc/sec: 1007.12
//
Query:       MMETSP0890-20130614|13266_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-22   77.8   9.6    6.7e-22   77.5   6.6    1.1  1  PF01649.13 Ribosomal protein S20
  ------ inclusion threshold ------
      0.052   13.0   1.1      0.059   12.9   0.8    1.1  1  PF13830.1  Domain of unknown function (DUF4192)


Domain annotation for each model (and alignments):
>> PF01649.13  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   6.6   9.8e-26   6.7e-22       1      82 [.      34     115 ..      34     117 .. 0.98

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 9.8e-26
                  ---STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH CS
   PF01649.13   1 anikSakKRirqnekrrlrNksykSklktliKkvlkaieagekdkakealkevqkkidkaakkgvihkNkAaRkkSrlakkl 82 
                  an++ a+KRi+++e+ r++N++ +S+++t ++k+ +ai +g+  +ake   ++++ id+a +++++hkN AaR kSrl kk+
  MMETSP0890-20130614|13266_1  34 ANNAGAEKRIKISERDRVKNAAWRSRVRTWTRKTSEAIDEGDVVAAKECARVATSMIDRATRRKIYHKNWAARNKSRLSKKV 115
                  8*****************************************************************************9986 PP

>> PF13830.1  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   8.6e-06     0.059     181     247 ..      34     100 ..      12     115 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.6e-06
    PF13830.1 181 aaaaarearlarerarae.eaalrratvealdaaaarvaagealsddeeaaalaaalsdvrvRDaala 247
                  a  a +e+r++  ++++   aa r++  ++ + +++++ +g  ++ ++e+a++a+ + d+ +R  +++
  MMETSP0890-20130614|13266_1  34 ANNAGAEKRIKISERDRVkNAAWRSRVRTWTRKTSEAIDEG-DVVAAKECARVATSMIDRATRRKIYH 100
                  33334444444444433336777888888999999999999.566668***************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       619  (0.045275); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 490.50
//
Query:       MMETSP0890-20130614|13340_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.43s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 184.34
//
Query:       MMETSP0890-20130614|13362_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   17.6   0.0     0.0063   16.5   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
  ------ inclusion threshold ------
      0.038   13.7   0.0      0.082   12.6   0.0    1.5  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.2e-07    0.0063       8      55 ..      42      86 ..      37     105 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 9.2e-07
                 TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTE CS
   PF00595.19  8 krgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgv 55
                   g lGf+++       ++  vse+  ++ a  +g++++D+++++Ng 
  MMETSP0890-20130614|13362_1 42 PKGALGFRVAQAGR---TNWKVSEMDSNSQARLSGVEVDDQLVAINGN 86
                 4789******7666...79****************************4 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05     0.082       1      53 [.      44      96 ..      44     102 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
    PF13180.1  1 gdiGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkv.ksltdlk 53
                 g++G +v q    +  +v + +++s a  +g+ ++D++++++g+ +  + ++lk
  MMETSP0890-20130614|13362_1 44 GALGFRVAQAGR-TNWKVSEMDSNSQARLSGVEVDDQLVAINGNFLdGTIEQLK 96
                 579999999996.9999**************************98754555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.98
# Mc/sec: 1058.80
//
Query:       MMETSP0890-20130614|13409_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-21   76.2   0.0    1.7e-21   76.1   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    1.8e-13   49.9   0.0    9.9e-07   28.3   0.0    2.0  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
       0.31   10.9   2.4         52    3.8   0.0    3.2  3  PF05345.7  Putative Ig domain
       0.56    9.5   4.7        2.3    7.5   0.1    3.3  3  PF01744.15 GLTT repeat (6 copies)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   4.8e-25   1.7e-21      15      91 ..       2      78 ..       1      79 [] 0.95

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 4.8e-25
    PF13306.1 15 tsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipss 91
                 t++t+p  +t+Ig +aF++c+sl+++tlp  lt+i+  aF+ c+ lt++++p  lt+i   aF++c+sl+++++p s
  MMETSP0890-20130614|13409_1  2 TQLTLPAGLTTIGLFAFRGCTSLTQLTLPAGLTTIDYGAFYRCTGLTHLNLPAGLTTIAAGAFRYCTSLTQLTLPDS 78
                 7899*********************************************************************9975 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.8e-09   9.7e-06       6      56 ..       4      52 ..       2      54 .. 0.93
   2 !   28.3   0.0   2.9e-10   9.9e-07       9      57 ..      30      76 ..      27      79 .] 0.91

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.8e-09
    PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 L L    l++i+  aF g+++L+ L L    l++i+ +af  ++ L++LnL
  MMETSP0890-20130614|13409_1  4 LTLPAG-LTTIGLFAFRGCTSLTQLTLP-AGLTTIDYGAFYRCTGLTHLNL 52
                 566667.999******************.*********************9 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 2.9e-10
    PF13855.1  9 snNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLs 57
                     l++i+ gaF +++ L++L+L    l++i ++af  ++sL++L L 
  MMETSP0890-20130614|13409_1 30 PAG-LTTIDYGAFYRCTGLTHLNLP-AGLTTIAAGAFRYCTSLTQLTLP 76
                 555.99*******************.********************995 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.035   1.2e+02      11      17 ..       5      11 ..       2      11 .. 0.88
   2 ?    3.8   0.0     0.015        52      10      17 ..      27      34 ..      15      37 .. 0.84
   3 ?    3.1   0.0     0.026        89       9      17 ..      49      57 ..      38      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.035
    PF05345.7 11 gLPsGLt 17
                 +LP+GLt
  MMETSP0890-20130614|13409_1  5 TLPAGLT 11
                 8*****8 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.015
    PF05345.7 10 ngLPsGLt 17
                  +LP+GLt
  MMETSP0890-20130614|13409_1 27 LTLPAGLT 34
                 58*****8 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.026
    PF05345.7  9 sngLPsGLt 17
                 +  LP+GLt
  MMETSP0890-20130614|13409_1 49 HLNLPAGLT 57
                 558*****8 PP

>> PF01744.15  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00068       2.3      11      18 ..       9      16 ..       8      17 .. 0.54
   2 ?    0.9   0.1      0.08   2.7e+02      16      19 ..      32      35 ..      24      37 .. 0.70
   3 ?    0.7   0.0     0.094   3.2e+02      16      19 ..      55      58 ..      53      60 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00068
   PF01744.15 11 GLvTmGLt 18
                 GL+T+GL+
  MMETSP0890-20130614|13409_1  9 GLTTIGLF 16
                 55555554 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.08
   PF01744.15 16 GLtT 19
                 GLtT
  MMETSP0890-20130614|13409_1 32 GLTT 35
                 3333 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.094
   PF01744.15 16 GLtT 19
                 GLtT
  MMETSP0890-20130614|13409_1 55 GLTT 58
                 3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 286.84
//
Query:       MMETSP0890-20130614|13412_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-11   41.5   0.4    1.2e-10   40.7   0.3    1.5  1  PF00717.18 Peptidase S24-like


Domain annotation for each model (and alignments):
>> PF00717.18  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.3   8.9e-15   1.2e-10       2      53 ..      70     122 ..      69     144 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 8.9e-15
                  ----TTGGT-----EEEEE--S.------EEEEE----..EEEEEEEE---EE CS
   PF00717.18   2 vpGdSMeptlldGdlvlVdkts.epkrGdiVvfrlpgdeeayvKrliglpgdr 53 
                  v ++SMep ++ Gd+++ + ++ +++ G++Vvf++++ ++ +v+r+ + ++++
  MMETSP0890-20130614|13412_1  70 VLSGSMEPAFQRGDILFLNNQDnPIRVGEVVVFKIKDRDIPIVHRVMKVHEKK 122
                  88*****************8885777799*****************9887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 687.65
//
Query:       MMETSP0890-20130614|13501_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 419.36
//
Query:       MMETSP0890-20130614|13568_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.60
# Mc/sec: 702.93
//
Query:       MMETSP0890-20130614|13578_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   27.7   0.0    1.4e-06   27.6   0.0    1.0  1  PF04305.9 Protein of unknown function (DUF455)


Domain annotation for each model (and alignments):
>> PF04305.9  Protein of unknown function (DUF455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     1e-10   1.4e-06      56      95 ..      21      60 ..       3      64 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1e-10
    PF04305.9 56 prrkklgsekgraallHalahiElnAIdLaldaiaRfkek 95
                  r +  ++ +g  a lH+++h E  AId  +d++aRf+++
  MMETSP0890-20130614|13578_1 21 IRAGTIKKSSGVKAYLHSVTHAECCAIDCFWDLLARFGPQ 60
                 4677899999***************************655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.46s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 232.48
//
Query:       MMETSP0890-20130614|13570_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-27   93.7   1.1    1.2e-26   92.2   0.5    2.1  2  PF01172.13 Shwachman-Bodian-Diamond syndrome (SBDS) protein
    9.4e-20   70.4   1.4    1.3e-19   69.9   0.2    1.9  2  PF09377.5  SBDS protein C-terminal domain
  ------ inclusion threshold ------
        1.8    6.0  10.4        2.1    5.8   7.2    1.1  1  PF12722.2  High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF01172.13  Shwachman-Bodian-Diamond syndrome (SBDS) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.5   2.6e-30   1.2e-26       1      89 [.      15     101 ..      15     103 .. 0.97
   2 ?   -2.7   0.0         1   4.7e+03      36      57 ..     200     221 ..     185     237 .. 0.77

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 2.6e-30
                  TT-EEEEEE----EEEEEEEHHHHHHHHTT----HHHHBSSSS-BSSS----B--HHHHHHHHS---HHHHHHHHHH---EE--HHHHH CS
   PF01172.13   1 tnvvkvrykkkgkefeilvfvdkvedlrggkeidlsdvlqsfkvFtnaskGeeaskseLeneFgtkdveeiikkILekGelqlsaeerr 89 
                  +nv++vr++++g++fe++++++kv d+r+g e dl++vlq+ +vF+naskG+ ask+e e++Fg   v++++++IL+ Gelq+s++er 
  MMETSP0890-20130614|13570_1  15 SNVAVVRLQRGGSRFEVACYPNKVVDYRNGIESDLDEVLQVRQVFKNASKGQVASKKEVEKAFGV--VQAACEEILKFGELQISEKERG 101
                  699*************************************************************5..899*****************96 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1
                  HHHBSSSS-BSSS----B--HH CS
   PF01172.13  36 sdvlqsfkvFtnaskGeeasks 57 
                  + +l+  +vF+ as   ea+  
  MMETSP0890-20130614|13570_1 200 TTFLAEPRVFRAASAAVEAQGT 221
                  5678888899888888777654 PP

>> PF09377.5  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.33   1.5e+03      84      94 ..      73      95 ..      13     107 .. 0.61
   2 !   69.9   0.2   2.9e-23   1.3e-19       3      85 ..     108     247 ..     106     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.33
    PF09377.5 84 v...........dkilslie.sv 94
                 v           ++il++ e ++
  MMETSP0890-20130614|13570_1 73 VekafgvvqaacEEILKFGElQI 95
                 03333344444466666666555 PP

  == domain 2    score: 69.9 bits;  conditional E-value: 2.9e-23
    PF09377.5   3 ekeiisivseklvdprTkrvytpgmIekaLdelsfsvspnksakeQAleaikaLiakqpipiararmrlrvtvpvkllkqvv.........................................................d 85 
                   k+i +iv+ek+++ +++r+++++ Iek +++l+f vs+ +s+k+QAl++i+ ++++  + +ara+mrl++  ++ ++ +++                                                          
  MMETSP0890-20130614|13570_1 108 SKDISQIVAEKIIEANSGRPVPASQIEKIMQNLKFTVSTSRSSKQQALDLIRCIENESELGLARAKMRLKIVNDSHAAREALlaidgivtdgttflaeprvfraasaaveaqgtsiqvidhaarvaiseitatekksssP 247
                  79*************************************************************************99999998888888888888888888888888887777777777777766665555554333330 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.2   0.00045       2.1     625     715 ..     239     329 ..     134     347 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00045
    PF12722.2 625 snleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenla 715
                   +++ks+s +++++es ++++++++ s++ +e++++ +++++++a+++++++ a+    v++ ++  +++ e+ +++++++++++ +++++
  MMETSP0890-20130614|13570_1 239 ATEKKSSSPQQQQEESMTHNKHNQNFSQQDQEENKPHQGKKSKAAKRREKEDYAERLALVKEAQERRQKHREHLESSDNITQDSSATTEND 329
                  2333344444444444444445555555555555555555555555555555555555555444444444444444444444333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2090  (0.152867); expected 273.4 (0.02)
Passed bias filter:                      566  (0.0413985); expected 273.4 (0.02)
Passed Vit filter:                        90  (0.0065828); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.79
# Mc/sec: 1204.25
//
Query:       MMETSP0890-20130614|13646_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 920.03
//
Query:       MMETSP0890-20130614|13710_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.64
# Mc/sec: 1115.80
//
Query:       MMETSP0890-20130614|13766_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00054   19.6   0.2    0.00054   19.6   0.1    2.6  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.16   11.9   0.5         26    4.7   0.3    2.4  2  PF08702.5  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   7.9e-08   0.00054      19      39 .]       2      23 ..       1      23 [. 0.93
   2 ?   -1.8   0.1      0.45   3.1e+03      23      39 .]     242     258 ..     229     258 .. 0.80
   3 ?   -2.2   0.1       0.6   4.1e+03      26      37 ..     403     414 ..     401     415 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 7.9e-08
                 EESS.STEEEEEETTSEEEEEE CS
   PF00400.27 19 fspd.gpllasgSrDgtirlWd 39
                 fsp  g +lasgS+D+ti lWd
  MMETSP0890-20130614|13766_1  2 FSPGdGAVLASGSKDNTIILWD 23
                 7888899**************9 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.45
                  STEEEEEETTSEEEEEE CS
   PF00400.27  23 gpllasgSrDgtirlWd 39 
                  g+ ++ + +Dg+i  +d
  MMETSP0890-20130614|13766_1 242 GSKIIDAASDGSIICFD 258
                  56778889999998776 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.6
                  EEEEETTSEEEE CS
   PF00400.27  26 lasgSrDgtirl 37 
                  + s+S+ g+irl
  MMETSP0890-20130614|13766_1 403 VGSSSKSGKIRL 414
                  669999999997 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0047        32      57     128 ..     109     179 ..      91     184 .. 0.90
   2 ?    4.7   0.3    0.0039        26      34      76 ..     185     227 ..     181     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0047
                  HHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  57 elvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdia 128
                  ++v ++k +l+++qk+   ++ +++++ + +e+ + +  +++ +  ++ ++ L   +++ e +i rL   ++
  MMETSP0890-20130614|13766_1 109 DVVATVKSILRKAQKDGILDEHNYDKLDQLVENAH-TFADARFTGLVEGLSKLELRVDHVEAEIGRLDRRVD 179
                  678999*********99999999999999999999.9999***************************98887 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0039
                  CCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCH CS
    PF08702.5  34 vdkkieklenlLeqlanktkeieelvksikeslkekqkqakdn 76 
                  ++k+i ++ ++++++ + t++++++ ++ k+++k+++k +   
  MMETSP0890-20130614|13766_1 185 TQKEIGQIHKRIDSVRAYTEKVDRKLRDFKKQYKKHLKRKAAA 227
                  5788999999999999999999999999999999988876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       935  (0.0683879); expected 273.4 (0.02)
Passed bias filter:                      671  (0.0490784); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.80
# Mc/sec: 1464.77
//
Query:       MMETSP0890-20130614|13779_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      575  (0.0420568); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.44s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 490.50
//
Query:       MMETSP0890-20130614|13849_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:01.66
# Mc/sec: 86.62
//
Query:       MMETSP0890-20130614|13871_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.05   13.3  29.9      0.065   12.9  20.7    1.2  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
        4.7    7.6   5.5         12    6.2   1.0    2.0  2  PF04679.10 ATP dependent DNA ligase C terminal region


Domain annotation for each model (and alignments):
>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  20.7   9.6e-06     0.065      62     120 ..       4      63 ..       1      65 [] 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.6e-06
    PF05887.6  62 depeeeeetepeeegeeetepeeegeeetepee.eeepepepetepepepepe.pepepep 120
                  ++pe e e++pe  + e ++pe e+e+e+epe  +e p+pe ete epe   e p+pe e 
  MMETSP0890-20130614|13871_1   4 PKPESETEAKPELVA-EVPKPESEAEPEPEPELvDEVPKPESETEAEPELVAEvPKPESET 63 
                  567777777887654.569999999999999987788999999999999755435565554 PP

>> PF04679.10  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2    0.0083        57      58      74 ..       6      21 ..       1      29 [. 0.75
   2 ?    6.2   1.0    0.0018        12      52      74 ..      32      57 ..      22      64 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0083
   PF04679.10 58 aerpdvwvePelVaevk 74
                 +e  ++  +PelVaev 
  MMETSP0890-20130614|13871_1  6 PE-SETEAKPELVAEVP 21
                 33.77889*******95 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0018
   PF04679.10 52 f....dekvkaerpdvwvePelVaevk 74
                      de +k+e  ++  ePelVaev 
  MMETSP0890-20130614|13871_1 32 EpelvDEVPKPE-SETEAEPELVAEVP 57
                 123555555555.99999*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                       95  (0.00694851); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:01.13
# Mc/sec: 136.63
//
Query:       MMETSP0890-20130614|13985_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 531.69
//
Query:       MMETSP0890-20130614|13988_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-34  116.6   1.0    6.6e-34  116.6   0.7    2.1  2  PF01765.14 Ribosome recycling factor
  ------ inclusion threshold ------
      0.019   13.1   1.1      0.029   12.5   0.8    1.1  1  PF07580.9  M26 IgA1-specific Metallo-endopeptidase C-terminal region
       0.14   13.0   1.8       0.31   11.8   0.1    2.2  2  PF11983.3  Domain of unknown function (DUF3484)
        6.7    7.0   9.3       0.98    9.7   1.1    2.7  2  PF12732.2  YtxH-like protein


Domain annotation for each model (and alignments):
>> PF01765.14  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.3      0.26   8.8e+02      82     106 ..      25      50 ..      16      95 .. 0.52
   2 !  116.6   0.7   1.9e-37   6.6e-34       2     165 .]      97     264 ..      96     264 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.26
   PF01765.14  82 ipiPplTeerRkelvkeakkl.aEea 106
                  ++ P +  e+R+  vk+ kk   E+a
  MMETSP0890-20130614|13988_1  25 MHRPVVCVEQRRWKVKKFKKGkKEQA 50 
                  55555555555555555554202222 PP

  == domain 2    score: 116.6 bits;  conditional E-value: 1.9e-37
   PF01765.14   2 lkkelkkirtgranpslldkikVeyygektpLnqvAsisvkeartllitpfdkslvkaiekaIlk.sdlglnpqndg.qviripiPplTeerRkelvkeakklaEeakvairniRrdankklkklekeke..iseDeekkaekeiqkltdkyikkidellkkkekell 165
                  l+++l+++r  + +p+lld  +Ve+y++ +pL+ vA++svk+a +l +  fd++ + ++ ka+ k  +l+lnp ++g  v++ip+P+++ e R  ++k+a+++aE++k +ir+iR +a+++lkk  ++k+  +s+D++++  + i++l+ + ik+    l++k+++++
  MMETSP0890-20130614|13988_1  97 LEQQLSRMRGSKPTPELLDAARVEAYHSIQPLSAVAQVSVKSATALEVRCFDPEVTIEVRKALTKlDGLSLNPIDNGnGVLTIPFPKPSAEARALAAKNATHTAEQTKRKIRRIRDKARDDLKKYASDKSngVSDDDKHRRLTFIDDLVSDAIKSATAKLESKKADIM 264
                  7899*************************************************************7789****977768*********************************************99988777**********************************98 PP

>> PF07580.9  M26 IgA1-specific Metallo-endopeptidase C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   8.4e-06     0.029     485     551 ..     186     253 ..     184     263 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.4e-06
    PF07580.9 485 lEaeavlkklnkd.kkkwfkkienkyvkdkdgnethatdkvrdlteeekklklksiddLidnniltkr 551
                  +Ea+a+ +k++++  ++  +ki +   k++d  +++a dk   +++++k+ +l+ iddL+ + i ++ 
  MMETSP0890-20130614|13988_1 186 AEARALAAKNATHtAEQTKRKIRRIRDKARDDLKKYASDKSNGVSDDDKHRRLTFIDDLVSDAIKSAT 253
                  699******999978889999999988889999***************************99886665 PP

>> PF11983.3  Domain of unknown function (DUF3484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     9e-05      0.31       2      58 ..      11      73 ..      10      91 .. 0.86
   2 ?   -0.4   0.1      0.59     2e+03      45      68 ..     194     215 ..     178     220 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9e-05
    PF11983.3  2 diLaqaAvtGeevlrrkpvdf......stptfeqstapaptvpyeqpqkqpteesaeeqeqke 58
                  +L + Av+ e  + ++pv        ++ +f++  +++  v+ +++++q++ e+++e+e+ e
  MMETSP0890-20130614|13988_1 11 PVLRKLAVRSEVIMMHRPVVCveqrrwKVKKFKKGKKEQAVVSTTEEAPQVVDEDEDETEEDE 73
                 578999************999***************999999999*********999654443 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.59
    PF11983.3  45 qpteesaeeqeqkepkekltdrvk 68 
                  +  +++ae  + k +  ++ d+++
  MMETSP0890-20130614|13988_1 194 KNATHTAE--QTKRKIRRIRDKAR 215
                  22233333..22333334666666 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.8      0.14   4.8e+02      25      50 ..      80     105 ..      35     143 .. 0.74
   2 ?    9.7   1.1   0.00029      0.98      21      64 ..     182     245 ..     181     264 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.14
    PF12732.2  25 ketReelkkkaddlkekaqelltear 50 
                   e  ++lk k+++++e++++ l+ +r
  MMETSP0890-20130614|13988_1  80 NEYGDRLKGKLKATTERLEQQLSRMR 105
                  44445566666666666666666655 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00029
    PF12732.2  21 PksGketReelkkkaddlkekaqelltearekvkekaes.ladk...................v 64 
                  Pk   e R+ ++k+a+++ e++++    +r+k+ + +++ ++dk                   v
  MMETSP0890-20130614|13988_1 182 PKPSAEARALAAKNATHTAEQTKRKIRRIRDKARDDLKKyASDKsngvsdddkhrrltfiddlV 245
                  7888899999999999999999999999888855555554444444444444555555544543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       827  (0.0604886); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.63
# Mc/sec: 1023.21
//
Query:       MMETSP0890-20130614|13992_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|13993_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   29.1   0.0    1.5e-06   28.6   0.0    1.3  1  PF12847.2  Methyltransferase domain
    2.9e-06   26.8   0.0    3.9e-06   26.4   0.0    1.1  1  PF13847.1  Methyltransferase domain
    5.1e-06   26.3   0.0    6.4e-06   26.0   0.0    1.2  1  PF13659.1  Methyltransferase domain
    0.00033   19.7   0.1    0.00042   19.4   0.1    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    0.00095   18.1   0.0     0.0012   17.7   0.0    1.2  1  PF00398.15 Ribosomal RNA adenine dimethylase
     0.0071   15.9   0.0     0.0093   15.5   0.0    1.2  1  PF13489.1  Methyltransferase domain
  ------ inclusion threshold ------
       0.01   14.7   0.0      0.014   14.3   0.0    1.2  1  PF02390.12 Putative methyltransferase
      0.011   15.0   0.0      0.015   14.5   0.0    1.2  1  PF05175.9  Methyltransferase small domain
      0.013   14.7   0.0      0.016   14.4   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
      0.032   13.6   0.0      0.044   13.2   0.0    1.1  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.047   12.9   0.0      0.065   12.5   0.0    1.1  1  PF03602.10 Conserved hypothetical protein 95
      0.091   13.1   0.0       0.13   12.6   0.0    1.3  1  PF08241.7  Methyltransferase domain
      0.093   12.9   0.0       0.13   12.4   0.0    1.2  1  PF13649.1  Methyltransferase domain
       0.12   11.8   0.1       0.16   11.3   0.1    1.2  1  PF01170.13 Putative RNA methylase family UPF0020


Domain annotation for each model (and alignments):
>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.6e-09   1.5e-06       5      64 ..      55     115 ..      51     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.6e-09
    PF12847.2   5 ilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaks.ldleeriellqgda.kee 64 
                  +lD+G+G G++ +++    +ga+  +g++++++ +++a +n k+   +++r+++++ d+ k +
  MMETSP0890-20130614|13993_1  55 VLDIGTGDGRIPIWAVL--RGARcGIGIEIDAALVRRALANGKKhGLNSDRFQIIHEDItKTD 115
                  7****************..99999******************8845566*********94333 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     4e-09   3.9e-06       3      97 ..      51     142 ..      49     150 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 4e-09
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAkeraqklgfe..nveFiqgdieelekl.leesfDlvisnevlnaladpqkvlkeie 97 
                   +  vlD+G+G G++ + +  +   ga+  +Gi+i++  + +A  + +k+g++  ++++i++di++ + + + +  D     + l+  + ++++l+ ie
  MMETSP0890-20130614|13993_1  51 TNDIVLDIGTGDGRIPIWAV-L--RGARcGIGIEIDAALVRRALANGKKHGLNsdRFQIIHEDITKTDVKcITDALDS----ASLMVTYLLPEALRTIE 142
                  6789***********98777.3..466667**********************9999*********9884444433332....44455555555555554 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   6.6e-09   6.4e-06       3      63 ..      54     115 ..      52     169 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 6.6e-09
    PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaragla.ervrvrqgdlrdla 63 
                   vld+g+G G ++++a  ++a  ++g+E+d++ ++ a +n +++gl+ +r+++++ d+++++
  MMETSP0890-20130614|13993_1  54 IVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNsDRFQIIHEDITKTD 115
                  59************************************999999985267********9874 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   4.3e-07   0.00042     159     226 ..      49     116 ..      37     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.3e-07
    PF06325.8 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevallkelpkeka 226
                  +++++ vlD+GtG G + i a++ ga+  +++ iD   v+ a +N ++ ++++ ++++ ++++++k ++
  MMETSP0890-20130614|13993_1  49 LNTNDIVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNSdRFQI-IHEDITKTDV 116
                  567889******************************************9999878876.5566655433 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0012      18      91 ..      39     117 ..      35     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.3e-06
   PF00398.15  18 vineIldklnlqekdtvlEigpGkGalTe.eLakrakqvvalEidsklvkrlqkkla....kdenvevvhqDflkfstp 91 
                  v++e+l  + l+++d vl+ig+G+G +   ++ + a+    +Eid  lv+r  ++ +    ++++++++h+D+ k++++
  MMETSP0890-20130614|13993_1  39 VLDEALTFAGLNTNDIVLDIGTGDGRIPIwAVLRGARCGIGIEIDAALVRRALANGKkhglNSDRFQIIHEDITKTDVK 117
                  889999*******************998624566669999**********9877666667799************9986 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.5e-06    0.0093      10      60 ..      41      96 ..      36     145 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.5e-06
    PF13489.1 10 adllerllarlkpggrvLDiGcGtGillellaengfd.vtgvDpspaaigk......a 60
                  ++l +++  l+++  vLDiG+G+G+       +g++  +g++++ a++ +      +
  MMETSP0890-20130614|13993_1 41 DEALTFAG--LNTNDIVLDIGTGDGRIPIWAVLRGARcGIGIEIDAALVRRalangkK 96
                 45566666..9**************998877999998466999999988875533331 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.014      19      77 ..      51     110 ..      31     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
                  GB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH..--TTB------ CS
   PF02390.12  19 eqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal..glkNlrilegd 77 
                   + +vl+IG+G G++ +  A  +     +GiEi  + v+++l++ +++  +   ++i++ d
  MMETSP0890-20130614|13993_1  51 TNDIVLDIGTGDGRIPIW-AVLRGARCGIGIEIDAALVRRALANGKKHglNSDRFQIIHED 110
                  4559***********996.666777778*******************95533445555555 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05     0.015      32      93 ..      52     114 ..      38     124 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-05
                  -----B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----...--EEE-STTTT CS
    PF05175.9  32 agkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen..vevlasdllee 93 
                  ++ vlD+G+G G + +++  ++ ++ +  ++i+a+ v+ a an ++++l++   +++++d++++
  MMETSP0890-20130614|13993_1  52 NDIVLDIGTGDGRIPIWAVLRGARCGI-GIEIDAALVRRALANGKKHGLNSdrFQIIHEDITKT 114
                  4559********************876.68*******************99999******9875 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.016      14      58 ..      52      96 ..      41     177 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-05
    PF07021.7 14 gsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGls 58
                 +  vld+G+GdG +  +   +    g G+e+d++ v +++a G +
  MMETSP0890-20130614|13993_1 52 NDIVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKK 96
                 5679********98666554456679**************99954 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.5e-05     0.044      65     130 ..      43     108 ..      30     114 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-05
                  HHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--..SEEEE- CS
   PF01135.14  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle..nvivvv 130
                  al +  l+  + vL++G+G G    + a l g+++  ++ie  + lv++a +n kk++l+  + ++++
  MMETSP0890-20130614|13993_1  43 ALTFAGLNTNDIVLDIGTGDGR-IPIWAVLRGARC-GIGIEIDAALVRRALANGKKHGLNsdRFQIIH 108
                  45555699*************6.568888888888.89******************998755566655 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.6e-05     0.065      43     102 ..      52     112 ..      42     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.6e-05
   PF03602.10  43 garvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealklee.evavlredaa 102
                  +  vLD+  G G + + A+ Rga+  + +e d++ v+   +n ++ +l++ +++++ ed +
  MMETSP0890-20130614|13993_1  52 NDIVLDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNSdRFQIIHEDIT 112
                  4569***********************************9**9999999877777777654 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013      0.13       1      56 [.      56     116 ..      56     144 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle.....lvvadaeelpf 56 
                  Ld+G+G g++  +   r a+  +g++++++ +++a +++k++gl+     ++++d++++++
  MMETSP0890-20130614|13993_1  56 LDIGTGDGRIPIWAVLRGARCGIGIEIDAALVRRALANGKKHGLNsdrfqIIHEDITKTDV 116
                  8*****9999999888878999***********************9999999999998765 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.13       1      73 [.      55     131 ..      55     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl...kvkfvqadaralp.....feegefdlvvc 73 
                  +ld+G G Gr    ++  l +g +   ig++i++  ++ a  + +++gl   +++ +++d+++ +      + ++ +l+v+
  MMETSP0890-20130614|13993_1  55 VLDIGTGDGRIPIWAV--L-RG-ARCGIGIEIDAALVRRALANGKKHGLnsdRFQIIHEDITKTDvkcitDALDSASLMVT 131
                  79******98766666..4.45.4889*****************999999889999*****88652222245556666666 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00017      0.16      22      99 ..      45     113 ..      41     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00017
   PF01170.13  22 nlagvkegdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvg.dkiefvkadaak 99 
                  + ag++ +d +lD   G G i+I a l ga++           +g++id+ +v++a +N ++ g++ d+ ++   d++k
  MMETSP0890-20130614|13993_1  45 TFAGLNTNDIVLDIGTGDGRIPIWAVLRGARCG----------IGIEIDAALVRRALANGKKHGLNsDRFQIIHEDITK 113
                  6789999999999999*****************..........9*****************999852566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 888.83
//
Query:       MMETSP0890-20130614|13994_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 483.08
//
Query:       MMETSP0890-20130614|13996_1  [L=1267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-45  154.0   0.0    4.6e-45  153.4   0.0    1.2  1  PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.048   13.3   0.0    1.6  1  PF00567.19 Tudor domain
      0.033   14.1   0.0       0.11   12.5   0.0    1.8  1  PF00665.21 Integrase core domain


Domain annotation for each model (and alignments):
>> PF07727.9  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.0     1e-48   4.6e-45       3     233 ..    1015    1261 ..    1013    1266 .. 0.95

  Alignments for each domain:
  == domain 1    score: 153.4 bits;  conditional E-value: 1e-48
    PF07727.9    3 twelvelpkgkkviglkWvfklKlnedgeierykARlVakGftqkegidyeetfspvvklesirlllalaaekkleleqlDvktaFLngeleeevYvkqpeGfedkkk............enkvckLkkslYgLkqapraWyeklsevllklgfkkseadkclfvkkkeeeliivllYVDDlliagsskelieelkeeLkkef..emkdlgelkyfLgleier..keegillsqekyvkkllkkfkm 233 
                   +++l+  p+g++ i lk v k+K ++dg+ +  kAR V+ G+  ++g+d+   ++p + +++ r+l+++a++++le+++ D+ +aF++++++  +Y++ p G+ +k++             + +++L kslYgL  ap   + ++s+++lklg+++s++d++lf+k+++++ i+v+l+VDD li++++++l++el ++L ++f  +++   +++ fLg+  ++  +++++++s  + v++ll+k++ 
  MMETSP0890-20130614|13996_1 1015 VFRLALVPEGRNSIPLKIVLKVKFHADGSYTSXKARSVVLGYLSRAGVDWYSSYAPTTMMATGRVLISIATRHGLEVSHCDIPQAFIQSDIDRPIYIRLPAGIGVKSDllddlmrnnpgkGTVALRLVKSLYGLASAPSLFNMTISQYFLKLGYTRSRSDSTLFTKHDTNGWIMVTLFVDDCLITATDTKLVKELRAKLVERFgeNVTWNQRVTSFLGIACKQspTNNEFSMSAGAKVRELLSKISA 1261
                   7899999**************************************************************************************************99999999999988556679******************************************************************************666888999***********888999999999999999998864 PP

>> PF00567.19  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     1e-05     0.048      45      78 ..     596     630 ..     590     636 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
                  S-B...--------EEEEE-TTT--EEEEEEEEEE CS
   PF00567.19  45 kkp.veslapkvgdgcvalfsedgkwyRAkitvsl 78 
                  k++ v   apk+ d + ++f++dg+w R++i +s+
  MMETSP0890-20130614|13996_1 596 KPQtVYHRAPKINDFVDCFFPHDGSWTRCQIIKST 630
                  444688899**********************5444 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.3e-05      0.11       4     114 ..     194     307 ..     192     310 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
                  XXXXEEEEEEE.EET......TEEEEEEEES----EEEEEESSS...-HHHHHHHHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HHHHHH CS
   PF00665.21   4 rpgelwqiDvt.pgripskggkaylltaiddfsrfivaealkde...ssaetvadlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvErfnr 114
                  +pge+++ D   +   p +g++++ + + d  s + +++a kd    +s  +v+ +++ +++  ++ ++k+l++D ++ +  ++   l ++lgi++++   y+++  + vE+ ++
  MMETSP0890-20130614|13996_1 194 APGEIFSFDAAiVTTAPVYGKYKCYYLFGDPLSDYGIFHAGKDLttrESINSVVFAVN-LIKILFQIHIKVLVTDAAKSLIGESGDYLRAQLGIQFHTLGRYDAHFGNFVEQKIG 307
                  6899999999986666889999999999999999999888666622245555556666.566666666*******************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.71u 0.41s 00:00:02.12 Elapsed: 00:00:01.55
# Mc/sec: 1958.83
//
Query:       MMETSP0890-20130614|13998_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00028   20.5   0.0    0.00041   20.0   0.0    1.3  1  PF03407.11 Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> PF03407.11  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     3e-08   0.00041       6     154 ..       6     149 ..       2     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3e-08
   PF03407.11   6 llvvalDeealkac.kelgvavcyltskgkdrskkdksfgsktykklswlkvrllqellelGynvllsDvDvvWlrnpfpll....eyedaDvliss.DnldgttadglknllNsGfffvrptsrskallkkwaeklatesgawDqdvfnellre 154
                  l+v+  D++++  + + +g  ++y+           +s ++ +y++ swl +++l  +  lG++ +++++ ++W r+ +  +    ++++aD+++++     +t +  + +l+  + ff+r + ++  +l+ + ++    + +   +  n+ l e
  MMETSP0890-20130614|13998_1   6 LVVAVPDAALQAQLeNTKGMIIVYHS--------AFASSMHGEYSS-SWLITSVLYLVNALGFDAFFLQPNAIWRRDVLTPIlesgRFRYADAIFATiEDGTNTLPPPFAALP--AAFFLRCNWKTELFLDALLHSQDLAESWGFAATINQHLSE 149
                  56666677777777333333333333........346777777765.89999*************************98766687777*********9555556677888888..999********99999999887776554455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 1072.05
//
Query:       MMETSP0890-20130614|14001_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-21   75.9   0.1    3.7e-21   74.9   0.1    1.4  1  PF07039.6 SGF29 tudor-like domain
  ------ inclusion threshold ------
       0.09   10.5   0.7       0.23    9.1   0.0    1.8  2  PF11696.3 Protein of unknown function (DUF3292)


Domain annotation for each model (and alignments):
>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1   5.4e-25   3.7e-21       4     129 ..      93     230 ..      90     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 5.4e-25
    PF07039.6   4 dkVAakvkkedeeeewilaevvsvekeekryevqDvddeeekktyklsrkkiiplPkklsketsklaefpkgskVLAlYPdTtaFYkAtVvat...............pkkkedeykleFeddeeedke...reVkkryVvalp 129
                  d+V+akv    +++ w+la+v +++ ++   +vqD dde  ++ y+++++++i lP++ s+ ++ ++ f++ s V A+YPdTt+FYkA Vv++               ++  +++  ++F dde++++    r+++ r+V +lp
  MMETSP0890-20130614|14001_1  93 DQVVAKVA---SHDLWVLARVFNFQGDN-IVDVQDIDDE--HRHYSVHKSDLILLPHTPSEFQQATSLFQPPSFVFAMYPDTTSFYKAQVVSAasqfshsdeiqdyddNSMFDSSIFVRFADDENDNGLlprRSIPLRFVTHLP 230
                  77888665...8899***********99.********87..699*************9999999*****************************999999999998887778999999*******99888898999999998876 PP

>> PF11696.3  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1     0.032   2.2e+02     206     257 ..      11      62 ..       2      71 .. 0.80
   2 ?    9.1   0.0   3.3e-05      0.23      36      72 ..      87     123 ..      75     130 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.032
    PF11696.3 206 aeqeasnlvasvatvavesaagkhdqgtpedaaeessvpdavdvvakaadaq 257
                  +e+e + l + v+++a    +  +dq +++ ++ +++v +++   + a  a+
  MMETSP0890-20130614|14001_1  11 SEEENQRLWQGVSAIAEALRQNHFDQCIASAKSVQNDVKQLIAFYTAAIKAD 62 
                  6889999999999999999999999999999999999988877666665554 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 3.3e-05
    PF11696.3  36 esdeiderlvsglsnedlwllirrfnkqiyyvkavpd 72 
                  ++ ++++++v+ ++  dlw+l r fn q  ++  v+d
  MMETSP0890-20130614|14001_1  87 RAVSLNDQVVAKVASHDLWVLARVFNFQGDNIVDVQD 123
                  5567899*******************99666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 824.63
//
Query:       MMETSP0890-20130614|14000_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-98  329.2  12.7    2.2e-98  328.7   8.8    1.2  1  PF01384.15 Phosphate transporter family
  ------ inclusion threshold ------
       0.21   11.6   1.5       0.83    9.7   0.1    2.4  3  PF13699.1  Domain of unknown function (DUF4157)


Domain annotation for each model (and alignments):
>> PF01384.15  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.7   8.8  3.3e-102   2.2e-98       1     325 [.      42     550 ..      42     551 .. 0.98

  Alignments for each domain:
  == domain 1    score: 328.7 bits;  conditional E-value: 3.3e-102
   PF01384.15   1 iGanDvanavatavgskaltlkqAvilaaifeflGalllggeVaktirkgivdeslftvnapavlllamlaallaaalwlllatylglPvStshtlvGaiiGaglaagglsgvnws.....................glllkivlswiisPilggliaallflllkklilkrkkslkralrvvpvlv..................................................................................................................................................................ekekveklfrilqilsaalvsfahGanDvanaiGplaailiiyaagsvaesk..savplwilllgalaialGlltggrrviktvGekitkltparGfsaelaaaltvllasllglPvStThvivgaivGvglarglkavnwkvvrkivlaWilTlpvsall 325
                  iGanDvana++t+vg+kalt++qAv+la+ifef Ga+l+g++V+ktirkgi d ++ft ++p +l+++m++++l++++wll+aty+++P+St+h+ v +iiG+ l+a+g + v w+                       +++ v+swi+sP+++g++aa+l+ ++++ il  ++s+  a+ ++p++v                                                                                                                                                                  +++++e++f+++q+++a++ sf+hGanDvan +Gp+aa++ +++ g v++s+  + + +w+l++g+++i++Gl t+g+++++ +G k+  +tp+rG+++el+aa++++  ++ g+P StT++++ga+++v l +g+++ n  ++ k +++W +T+ ++++l
  MMETSP0890-20130614|14000_1  42 IGANDVANAYSTSVGAKALTIRQAVVLAGIFEFSGAVLMGSSVVKTIRKGIADVECFT-DNPGLLIYGMTCVILCSGAWLLIATYFEMPISTTHATVSGIIGFTLMARGKDCVIWNytkkdygngttnmgfdnfpwlDGVAEMVMSWILSPFASGICAAILYGFTYYCILIWDNSYLYAKIAFPFIVafttgvnvvfwivkgtkgrpkrfrtsrlvreanggnvvpaiivsawvmlamfilsalllipisrrieatvtagnaqepvktvdgkvleteegeidpeeqkentepvdlevnedltssvevpttekkktttpmgyifkelnkdphaplknselvgeihsscrrHDNRTEAFFKYVQVFTAIVDSFSHGANDVANSMGPFAAAYTAWNRGHVNSSTdlKDTMTWMLAIGGAGIVVGLGTYGYKIMSAMGVKLAAITPSRGYCIELGAAFVIIYGTAQGWPLSTTQCQIGATIAVSLFEGKHGFNKMLLLKAFFGWGFTFAICGFL 550
                  8********************************************************7.89*************************************************99*************************6699*********************************999999999988899************************************************************************************************************************************************************************************************************999998774436779**************************************************************************************************9987 PP

>> PF13699.1  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00012      0.83      25      50 ..      44      69 ..      34      76 .. 0.87
   2 ?   -0.4   0.0      0.17   1.1e+03      40      49 ..     228     237 ..     226     250 .. 0.83
   3 ?   -3.3   0.0       1.3   9.2e+03      38      52 ..     426     440 ..     411     446 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
    PF13699.1 25 tgsaaeraaaalgAqAfTvgqdivfa 50
                  ++ a++ ++++gA+A+T+ q +v+a
  MMETSP0890-20130614|14000_1 44 ANDVANAYSTSVGAKALTIRQAVVLA 69
                 578999******************94 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.17
    PF13699.1  40 AfTvgqdivf 49 
                  AfT+g ++vf
  MMETSP0890-20130614|14000_1 228 AFTTGVNVVF 237
                  9********9 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.3
    PF13699.1  38 AqAfTvgqdivfapg 52 
                  A A+T  ++ + +++
  MMETSP0890-20130614|14000_1 426 AAAYTAWNRGHVNSS 440
                  788888888777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.47s 00:00:01.36 Elapsed: 00:00:00.75
# Mc/sec: 1856.38
//
Query:       MMETSP0890-20130614|14007_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.45s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 231.08
//
Query:       MMETSP0890-20130614|14002_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   73.5   0.0    2.1e-20   72.5   0.0    1.5  1  PF01764.20 Lipase (class 3)
      2e-07   30.6   3.9    8.5e-07   28.6   2.7    2.1  1  PF01363.16 FYVE zinc finger
  ------ inclusion threshold ------
      0.067   12.5   0.0        5.8    6.1   0.0    2.3  2  PF03959.8  Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   4.7e-24   2.1e-20       1     138 [.     206     339 ..     206     342 .. 0.89

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 4.7e-24
                  EEEEE-E-SHHHHHHHHHHTECCCTTCGGSTT-EEE---HHHHHHHHHH..HHHHHHHHHHHSTTSEEEEE-------HHHHHHHHHHHT-.....TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S CS
   PF01764.20   1 vvafRGtetaeewltdldislvevdellekeggkvhkgfleayksareq..vlkelkrllekypdykivvtGHSLGGalAlLaaadlaenglnk..sslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlp 138
                  v+a+RG+ t+++wl + d ++ ++   ++k  + vh g+l+a++ + ++  ++  lkrl +k+  ++i  tGHSLG+++A++++a l+++ +++    +v+++++++P   + ++a+l+        v++vv+++D++prl 
  MMETSP0890-20130614|14002_1 206 VLAIRGSATRSDWLVNTDSEPLPIFGDKNK-TYWVHGGMLKAARALLDDcgLRVCLKRLANKN--FSIDTTGHSLGAGVATVITALLMNEHRETkfPAPVKCIAYAAPASVDADLAHLLL---GS--VVSVVHHDDLIPRLS 339
                  789*********************998775.9************8887622677777776655..7*******************9999887778899*********************9...45..99***********86 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   2.7   1.9e-10   8.5e-07      24      64 ..     525     581 ..     497     585 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.9e-10
   PF01363.16  24 rrhhCrlCGkvvCskCs..................skrvekleeeaaeekevrvCkeCl 64 
                    hhCr+CG+vvC+ C                   + r++   ++ +  + vrvC+ C 
  MMETSP0890-20130614|14002_1 525 ATHHCRACGQVVCAFCApaadeiagdgigqkqtlpDLRIS--LPSFGYFEAVRVCRPCA 581
                  57***************66666666666654444444443..4588888999******6 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1    0.0065        30      37      80 ..      21      76 ..       3      90 .. 0.64
   2 ?    6.1   0.0    0.0013       5.8     107     146 ..     273     312 ..     220     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0065
    PF03959.8 37 elvyldapvel.eekadlpkseseeee.....kseeeeeyraWfrkkde......s 80
                 +  +++ p e  ++ +++++se+e+++      +++++++ +W+++  e      s
  MMETSP0890-20130614|14002_1 21 RHFFVTNPSEStAQDQEISQSEEEKDDsettpPANSNSNTSSWWQSTREalstrsS 76
                 44566666665256666666666665589988888999999****99875554332 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0013
    PF03959.8 107 iGFSqGaalaallaslleellkeakhpklkfailvsGfkl 146
                   G S Ga +a+++++ll + ++e+k p    +i++++ ++
  MMETSP0890-20130614|14002_1 273 TGHSLGAGVATVITALLMNEHRETKFPAPVKCIAYAAPAS 312
                  699***************9999999998888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.77s 00:00:01.39 Elapsed: 00:00:01.02
# Mc/sec: 1379.08
//
Query:       MMETSP0890-20130614|14012_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.74
# Mc/sec: 582.90
//
Query:       MMETSP0890-20130614|14016_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 268.56
//
Query:       MMETSP0890-20130614|14013_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-173  575.4   0.0   4.1e-173  575.2   0.0    1.1  1  PF00464.14 Serine hydroxymethyltransferase
    0.00017   20.7   0.0    0.00031   19.8   0.0    1.5  1  PF01212.16 Beta-eliminating lyase
  ------ inclusion threshold ------
      0.049   13.7   0.0       0.85    9.7   0.0    2.5  2  PF13443.1  Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00464.14  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  575.2   0.0    9e-177  4.1e-173       1     399 []      47     441 ..      47     441 .. 0.96

  Alignments for each domain:
  == domain 1    score: 575.2 bits;  conditional E-value: 9e-177
                  HHHH-HHHHHHHHHHHHHHH---B--TT-----HHHHHH---GGGC---------------HHHHHHHHHHHHHHHHHCT-STTT.EEE-------CCCHHHHHHHS----EEE----------------......--.....----SEE----B-TT---B-HHHHHHHHHHH--SEEEE---S--S---HHHHHHHHHHHT-EEEEE-CCC---TTTTSS--GCCT-SEEE--SSTTT-------EEES....EE.....EE.HHHHHHHHHHHTTTT-----HHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHT.T-EETT----SS-EEEE-TTSS----HHHHHHHHTT-B-B-------S-TTT----EE--HHHHHTT--HHHHHHHHHHH CS
   PF00464.14   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGceyvdevetlaqerakelfkldpakwgvnvqplsGsqanlavytallepgdrilgldladGGhlthGakv......eskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgayllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepefkvyqkqvlknakalaealkek.gyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekvaeyi 399
                  lee+d+ev+e+i+ ek+rq ++ieliasenf+s+a++e lGs+ltnky+eG+PGkryyGG+e++d++e+l+++ra+e+++ldp+ wg nvqp+sGs+an+avyt+ll+p+dri+gldl+ GGhlthG+ +      + k +sa+s++fes++y+v++etg+id+delek a+ fkP li++G saysr +dya++r+iad  g+ l++dmahi+Glvaa+  ++Pf+++d+vtttthk+lrGpr+g+i+++       k+    +  +e+ in+avfP+lqGGP+ h ia++av lke+++pe+k+y kq+  n kala  l+++ gy+lv+gGtdnhlvl dlr++g++G++ ek+++ v+it nkn+vPgd sal ++G+r+G+pa+t+rg+ e+d+ ++a+++
  MMETSP0890-20130614|14013_1  47 LEEVDSEVFELIECEKQRQFTSIELIASENFASNAIMECLGSCLTNKYSEGLPGKRYYGGNEIIDKIENLCKARALEAYDLDPQAWGCNVQPYSGSPANFAVYTGLLKPHDRIMGLDLPSGGHLTHGFYTldkktmNRKAVSATSVYFESLPYRVHPETGYIDFDELEKLANVFKPALIICGGSAYSRDWDYAQFRKIADANGSLLMMDMAHISGLVAAKEAANPFDFCDIVTTTTHKSLRGPRSGIIFFK-------KD----ARGFEDAINNAVFPSLQGGPHEHQIAGVAVQLKETTKPEYKAYVKQIKLNIKALATRLTDTyGYTLVTGGTDNHLVLWDLRPTGITGSKIEKICDIVQITLNKNAVPGDVSALSPGGVRIGAPAMTTRGLLEADFIQIADFL 441
                  6899***************************************************************************************************************************75422222255779**************************************************************************************************************.......33....45699*****************************************************98549***************************************************************************9985 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.7e-08   0.00031     101     227 ..     204     358 ..     140     477 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.7e-08
                  TT.S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHH.HHHHHHHHHH---EEEEE-E-HHHHHHHHT--HHHHHTT-SEEEE-S----------EEE--HH..........................................HHHHHHHHHHH----.. CS
   PF01212.16 101 keagkldleklealikevgaheenialisltitnntaGGqvvslee.lreiaeiakeygiplhlDgARlaeaakslgeiakeiasyaDsvtislkKdlganvGgilafrdk..........................................flaeaveqrkylggglr 227
                  +  g++d ++le+l +   +   ++ali++       GG+++s ++  ++ ++ia+++g  l++D A +   +    + a++ ++ +D+vt    K+l  +  gi++f+++                                          ++++ +   k+l+++l 
  MMETSP0890-20130614|14013_1 204 ET-GYIDFDELEKLANV--F---KPALIIC-------GGSAYSRDWdYAQFRKIADANGSLLMMDMAHISGLV--AAKEAANPFDFCDIVTTTTHKSLRGPRSGIIFFKKDargfedainnavfpslqggphehqiagvavqlkettkpeykaYVKQIKLNIKALATRLT 358
                  33.77777777777777..5...5666655.......9******754899*****************999877..457788999***************************99999999999999999999999999999999999999999877777777777777765 PP

>> PF13443.1  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.13   5.7e+02      37      50 ..     207     220 ..     201     221 .. 0.85
   2 ?    9.7   0.0   0.00019      0.85      30      55 ..     376     401 ..     375     402 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.13
    PF13443.1  37 rlsldtLdkiCdaL 50 
                  ++++d L+k+++++
  MMETSP0890-20130614|14013_1 207 YIDFDELEKLANVF 220
                  79*********998 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00019
    PF13443.1  30 lvkgeperlsldtLdkiCdaLdctpg 55 
                  l++ +p+ ++ + ++kiCd+ ++t++
  MMETSP0890-20130614|14013_1 376 LWDLRPTGITGSKIEKICDIVQITLN 401
                  79999****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.82
# Mc/sec: 1464.12
//
Query:       MMETSP0890-20130614|14054_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-15   56.3   0.0    2.1e-15   56.2   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    4.8e-14   51.5   0.0    1.2e-06   28.1   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
      7e-12   44.2   1.2    3.9e-06   26.1   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
    1.2e-10   40.3   0.2      1e-05   24.9   0.0    2.1  2  PF07719.12 Tetratricopeptide repeat
    3.4e-09   36.1   0.0    5.2e-09   35.5   0.0    1.3  1  PF13414.1  TPR repeat
      1e-08   34.1   0.0    0.00027   20.3   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    5.2e-07   28.8   0.3     0.0037   16.8   0.0    2.0  2  PF13181.1  Tetratricopeptide repeat
    7.1e-05   22.9   0.0      0.078   13.5   0.0    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00012   22.4   0.0    0.00077   19.9   0.0    1.9  1  PF13432.1  Tetratricopeptide repeat
    0.00032   20.5   0.4    0.00099   19.0   0.1    2.0  2  PF13431.1  Tetratricopeptide repeat
     0.0043   17.2   0.0       0.49   10.8   0.0    2.1  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.045   13.7   0.0    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.041   13.8   0.0       0.45   10.4   0.0    2.0  1  PF12688.2  Tetratrico peptide repeat
      0.067   12.9   0.2          2    8.2   0.1    2.1  1  PF04212.13 MIT (microtubule interacting and transport) domain
      0.073   12.7   0.2        8.2    6.2   0.0    2.1  2  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.3e-18   2.1e-15      20      73 ..       2      56 .]       1      56 [] 0.98

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.3e-18
    PF13424.1 20 dydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                 +ydeA  lye+a+++  +++g++h ++a+ lnnl+ l++ +g+ydeA++++e+A+
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIdEKTFGPNHSQVATGLNNLGGLLENQGKYDEAKPLFERAI 56
                 69***************************************************96 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     1e-07   9.1e-05      17      40 ..       2      25 ..       1      27 [. 0.95
   2 !   28.1   0.0   1.3e-09   1.2e-06       1      28 [.      28      55 ..      28      56 .] 0.95

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1e-07
    PF13374.1 17 ryeeAlaleeealairrrllGddH 40
                 +y+eA +l+e+a  i ++ +G++H
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDEKTFGPNH 25
                 69********************** PP

  == domain 2    score: 28.1 bits;  conditional E-value: 1.3e-09
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeea 28
                 +a+ lnnL+ +l ++g+y+eA +l+e+a
  MMETSP0890-20130614|14054_1 28 VATGLNNLGGLLENQGKYDEAKPLFERA 55
                 6889**********************98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   2.3e-06    0.0021      16      32 ..       2      18 ..       1      19 [. 0.94
   2 !   26.1   0.0   4.3e-09   3.9e-06       2      28 ..      30      56 .]      29      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.3e-06
                 -HHHHHHHHHHHHHHHT CS
   PF00515.23 16 kydeAleyyekALelnP 32
                 kydeA   ye+A+++++
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDE 18
                 8**************97 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 4.3e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23  2 kalynlGnaylklgkydeAleyyekAL 28
                   l+nlG ++ ++gkydeA   +e+A+
  MMETSP0890-20130614|14054_1 30 TGLNNLGGLLENQGKYDEAKPLFERAI 56
                 579***********************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.2e-05     0.029      16      32 ..       2      18 ..       1      20 [. 0.92
   2 !   24.9   0.0   1.1e-08     1e-05       1      28 [.      29      56 .]      29      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.2e-05
                 -HHHHHHHHHHHHHH-T CS
   PF07719.12 16 dyeeAleafekAleldP 32
                 +y+eA  ++e+A+++d 
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDE 18
                 7**************97 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAl 28
                 a +l+nlG +++++g+y+eA+ +fe+A+
  MMETSP0890-20130614|14054_1 29 ATGLNNLGGLLENQGKYDEAKPLFERAI 56
                 5689***********************7 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   5.7e-12   5.2e-09      18      65 ..       2      56 .]       1      56 [] 0.91

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 5.7e-12
    PF13414.1 18 dydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAl 65
                 +ydeA  +ye+A+++d     pn+ +    ++nl+ +++++g +y+eA   +e+A+
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDektfgPNHSQvatGLNNLGGLLENQG-KYDEAKPLFERAI 56
                 8**************98888888866666*************.6*********997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00011     0.097      14      33 ..       2      21 ..       1      24 [. 0.80
   2 !   20.3   0.0     3e-07   0.00027       2      27 ..      32      55 ..      31      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
    PF13176.1 14 dyekAielyeraLaltkdpl 33
                 +y++A  lyera+++++  +
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDEKTF 21
                 6**********777776665 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 3e-07
    PF13176.1  2 llnLarlysrlgdyekAielyeraLa 27
                 l+nL+ l +++g+y++A  l+er  a
  MMETSP0890-20130614|14054_1 32 LNNLGGLLENQGKYDEAKPLFER--A 55
                 89*********************..4 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00034      0.31      16      32 ..       2      18 ..       1      21 [. 0.90
   2 !   16.8   0.0   4.1e-06    0.0037       3      28 ..      31      56 .]      29      56 .] 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00034
                 -HHHHHHHHH---HHHH CS
    PF13181.1 16 dydkAkeylekalelkp 32
                 +yd+A+  +e+a++++ 
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDE 18
                 69*************97 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 4.1e-06
                 -TTT---HHHHTT-HHHHHHHHH--- CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeylekal 28
                  ++nlG ++++ G+yd+Ak  +e+a+
  MMETSP0890-20130614|14054_1 31 GLNNLGGLLENQGKYDEAKPLFERAI 56
                 589********************996 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0042       3.8      17      33 ..       3      19 ..       2      32 .. 0.80
   2 !   13.5   0.0   8.5e-05     0.078       4      28 ..      32      56 .]      28      56 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0042
    PF13428.1 17 pdeAiallrralalaPd 33
                 +deA+ l++ra++ + +
  MMETSP0890-20130614|14054_1  3 YDEAMPLYERAIKIDEK 19
                 89**********97654 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 8.5e-05
    PF13428.1  4 llalarallalGdpdeAiallrral 28
                 l  l+ +l+++G +deA  l++ra+
  MMETSP0890-20130614|14054_1 32 LNNLGGLLENQGKYDEAKPLFERAI 56
                 567999*****************96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   8.4e-07   0.00077      12      57 ..       2      55 ..       1      56 [] 0.90

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 8.4e-07
    PF13432.1 12 dydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraa 57
                 +ydeA +++e+a++ +         + a  l +l+ +l  +g++deA  l+++a
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDektfgpnhSQVATGLNNLGGLLENQGKYDEAKPLFERA 55
                 79**************99999666559*********************999988 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.1e-06   0.00099       1      33 [.       9      49 ..       9      50 .. 0.91
   2 ?   -2.7   0.0       9.9     9e+03       1       6 [.      51      56 .]      51      56 .] 0.79

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.1e-06
    PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                 lye+a+++d     Pn+   a  +nnL+ ll n+G+++eA+
  MMETSP0890-20130614|14054_1  9 LYERAIKIDektfgPNHsqvATGLNNLGGLLENQGKYDEAK 49
                 7*******99999999978888888**************97 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 9.9
    PF13431.1  1 lyekal 6 
                 l+e+a+
  MMETSP0890-20130614|14054_1 51 LFERAI 56
                 689997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.048        43      15      28 ..       2      15 ..       1      17 [. 0.90
   2 !   10.8   0.0   0.00054      0.49       6      27 ..      35      56 .]      34      56 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHH CS
    PF13174.1 15 dtdeAlealerlik 28
                 ++deA+ ++er ik
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIK 15
                 689********998 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAlealerli 27
                 l+ +++++g++deA+ ++er i
  MMETSP0890-20130614|14054_1 35 LGGLLENQGKYDEAKPLFERAI 56
                 666788999**********986 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     5e-05     0.045       4      48 ..       2      52 ..       1      55 [. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5e-05
                 -HHHHHHHHHHHCCC-ST...-HHHH....CHHHHHHHHHH---HHHHHHHH CS
    PF12895.2  4 nyknAlflaekllaespk...dpeda....ylyalAlclylngeykrAyell 48
                  y++A+ l+e++++ + k     +++     l +l+  l ++g+y++A  l+
  MMETSP0890-20130614|14054_1  2 KYDEAMPLYERAIKIDEKtfgP-NHSqvatGLNNLGGLLENQGKYDEAKPLF 52
                 6999999999999999985541.44445555555799999999999997776 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00049      0.45      18      54 ..       4      38 ..       2      56 .] 0.52

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00049
    PF12688.2 18 akAvplYrrAlaaGLagarrrratiqlaSsLRnlGrv 54
                 ++A+plY+rA++  ++++       q a  L nlG +
  MMETSP0890-20130614|14054_1  4 DEAMPLYERAIK--IDEKTFGPNHSQVATGLNNLGGL 38
                 789999999986..34444444444555555555432 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0022         2       3      28 ..       4      52 ..       2      56 .] 0.48

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHTT.......................-HHHHHHHH CS
   PF04212.13  3 skAlelikkAveaDeag.......................kyeeAlelY 28
                 ++A +l  +A+++De+                        ky+eA  l 
  MMETSP0890-20130614|14054_1  4 DEAMPLYERAIKIDEKTfgpnhsqvatglnnlggllenqgKYDEAKPLF 52
                 4555555555555555444444444444444444444444666665555 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.023        21      16      35 ..       2      19 ..       1      20 [. 0.86
   2 ?    6.2   0.0     0.009       8.2      13      23 ..      41      51 ..      41      53 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.023
                 -HHHHHHH..HHHHHHH-TT CS
    PF07720.7 16 kyqeArelfsYallaildke 35
                 ky+eA  l  Y+ + ++d++
  MMETSP0890-20130614|14054_1  2 KYDEAMPL--YERAIKIDEK 19
                 9*******..8888888865 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.009
                 HTT-HHHHHHH CS
    PF07720.7 13 nkkkyqeArel 23
                 n++ky+eA  l
  MMETSP0890-20130614|14054_1 41 NQGKYDEAKPL 51
                 89******666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.55
# Mc/sec: 243.99
//
Query:       MMETSP0890-20130614|14044_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.3   2.4        0.1   11.7   1.7    1.2  1  PF05549.6 Allexivirus 40kDa protein
       0.24   11.4   2.2       0.46   10.5   1.5    1.5  1  PF04380.8 Membrane fusogenic activity


Domain annotation for each model (and alignments):
>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.7   1.5e-05       0.1      63     168 ..     217     322 ..     208     335 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.5e-05
    PF05549.6  63 siinklnpvslls..qttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkassaeaaasedLpi 168
                   ++ +l +++++   ++  L  lr+++r l    ++l+++ + +++ ++++ ++   + l+ +e +l++l ++l +l  ++++++   s sp +a +++ + ++ +  
  MMETSP0890-20130614|14044_1 217 LLVRSLSELTAVVarHGEDLRALREESR-LYARRETLHETLTAISHATREDASRT-NTLLTRLEAKLDSLDRRLSKLEGTANDQQLDKSISPMPAPARDRQKHRRIDQ 322
                  5555555544332337889999999876.66778999999999988877776665.6789**********************99999999999999988888777554 PP

>> PF04380.8  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   6.8e-05      0.46      14      77 ..     228     292 ..     218     294 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.8e-05
    PF04380.8  14 klsealgaaqglreevek.nvrallesalsklDLVtReEFdvqrevlartRekleaLearvaeLe 77 
                  ++ +  ++++ lree +  + r+ l ++l+ +   tRe+      +l+r+ +kl++L  r+++Le
  MMETSP0890-20130614|14044_1 228 VVARHGEDLRALREESRLyARRETLHETLTAISHATREDASRTNTLLTRLEAKLDSLDRRLSKLE 292
                  55555555566666655414478999999999999*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:00.68
# Mc/sec: 1318.00
//
Query:       MMETSP0890-20130614|14067_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 328.99
//
Query:       MMETSP0890-20130614|14094_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 272.31
//
Query:       MMETSP0890-20130614|14093_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 966.03
//
Query:       MMETSP0890-20130614|14248_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-31  108.5   0.2    1.9e-31  107.9   0.1    1.3  1  PF02678.11 Pirin
    5.2e-23   80.9   0.0    1.6e-22   79.4   0.0    1.7  2  PF05726.8  Pirin C-terminal cupin domain


Domain annotation for each model (and alignments):
>> PF02678.11  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.1   2.8e-35   1.9e-31       2     107 .]      22     129 ..      21     129 .. 0.94

  Alignments for each domain:
  == domain 1    score: 107.9 bits;  conditional E-value: 2.8e-35
                  ---GGG------EEEEESS-BTTB--SS----TTEEE-----EEE--S-EEEEEEEE--EEEEE----EEEE----EEEEE-----EEEEE---S....S--EEEEEEEE CS
   PF02678.11   2 vrvrralgkaawlqlvdpFlfldhfgpaklsagedelgagfppHpHrgletvtylleGeiehrDslGnkgvirpgdvqwmtAGsGivHsEmpeee....eeslhglQlWv 107
                  ++v +++g++a  ++++pFl++d+  p+++ + +++   g+ +HpHrg+etvt+ l+G+i+h Ds+G++ +i+pgdvqwm+A++Gi+H+E++++e    ++++++lQlWv
  MMETSP0890-20130614|14248_1  22 FHVFPVFGEKAFTEKISPFLMFDYAPPKEFPPTSKK--LGVGQHPHRGFETVTLALQGSIDHADSKGHTDTIGPGDVQWMSAAKGIIHEEFHSREfakkGGKMEMLQLWV 129
                  67778888889999****************998875..5******************************************************9999999*********8 PP

>> PF05726.8  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.39   2.7e+03      18      49 ..      66     100 ..      61     109 .. 0.61
   2 !   79.4   0.0   2.3e-26   1.6e-22       6     103 ..     189     284 .]     184     284 .] 0.94

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.39
    PF05726.8  18 egleafvyvleGsgevgger...saieeeqlvvlg 49 
                   g+e++ + l+Gs+   +++    +i ++++ +++
  MMETSP0890-20130614|14248_1  66 RGFETVTLALQGSIDHADSKghtDTIGPGDVQWMS 100
                  67788888888888766665333444444444444 PP

  == domain 2    score: 79.4 bits;  conditional E-value: 2.3e-26
    PF05726.8   6 leagakfelplpegleafvyvleGsgevggersaieeeqlvvlg.dgdsvevkaeekgarvlllaGePlgepvviyGpfVmntkeeieqAfedyregrf 103
                   ++++++ l+ p g++a+++  +G++ v+ +  +iee q+++l+ dgd++ +ka+  ga++ l++GePl+ep++  GpfV nt++e++qA++d+ +grf
  MMETSP0890-20130614|14248_1 189 SKEETNVILDSPRGHNALLFAARGNLVVNHH--IIEESQVALLSpDGDNIAFKAS-PGAQIFLMGGEPLNEPIAARGPFVCNTEDELMQAVNDFYNGRF 284
                  566777888899*****************99..7********************9.*****************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.79
# Mc/sec: 861.48
//
Query:       MMETSP0890-20130614|14309_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.7    8.5   8.7        1.8    8.5   6.0    1.0  1  PF09805.4  Nucleolar protein 12 (25kDa)
        4.1    5.6  16.1        4.2    5.6  11.2    1.0  1  PF03344.10 Daxx Family
          5    5.5  37.0        5.3    5.4  25.7    1.1  1  PF10446.4  Protein of unknown function (DUF2457)
        7.7    4.2  20.3        8.2    4.1  14.1    1.0  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.0   0.00053       1.8      77     125 ..      14      56 ..       6      60 .] 0.53

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00053
    PF09805.4  77 keleeeeddeeeeeeekeeeeeedewegfnedeeeeeteeeedsdedkv 125
                  ++l++++dd+ +++++++ ++++d       ++++++++ ++d+de+k+
  MMETSP0890-20130614|14309_1  14 QLLNDADDDDGDDDDDDDADDDDD------AADDDDDDDDDDDDDESKK 56 
                  455555555555555555555555......3344455555555555544 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.2    0.0012       4.2     443     476 ..      20      53 ..       3      58 .. 0.37

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0012
   PF03344.10 443 ekaekeedeeddekeeedkseeeeeeeeeeeeee 476
                  ++ + ++d++dd ++++d ++++++++++++++e
  MMETSP0890-20130614|14309_1  20 DDDDGDDDDDDDADDDDDAADDDDDDDDDDDDDE 53 
                  2222222222222222222222222222222111 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  25.7    0.0016       5.3      54      91 ..      18      54 ..       9      59 .. 0.40

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0016
    PF10446.4 54 dededdeeddddeDeddddddddeDdeddelddddstl 91
                 d d+dd++dddd+D ddddd +d+Dd+dd+ dddd+++
  MMETSP0890-20130614|14309_1 18 DADDDDGDDDDDDDADDDDDAADDDDDDDD-DDDDDES 54
                 233333333333333333322222222222.2222222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  14.1    0.0024       8.2     136     174 ..      18      54 ..       5      58 .. 0.41

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0024
    PF02724.9 136 dedsdseddeeeeessasekrksesdedeeddddeeded 174
                  d d+d+ dd++++++++++  ++ +d+d++dddd++de+
  MMETSP0890-20130614|14309_1  18 DADDDDGDDDDDDDADDDD--DAADDDDDDDDDDDDDES 54 
                  2233333333333333332..222333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                       119  (0.00870392); expected 13.7 (0.001)
Passed Fwd filter:                        55  (0.00402282); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 182.00
//
Query:       MMETSP0890-20130614|14323_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-29  103.6   0.0    1.3e-29  103.3   0.0    1.0  1  PF10230.4  Uncharacterised conserved protein (DUF2305)
    2.2e-11   43.9   0.1    3.1e-11   43.5   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
    2.4e-08   33.7   0.1    5.6e-08   32.5   0.1    1.8  1  PF12695.2  Alpha/beta hydrolase family
    0.00014   21.3   0.0    0.00023   20.6   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
     0.0057   16.7   0.0      0.012   15.6   0.0    1.5  1  PF00975.15 Thioesterase domain
  ------ inclusion threshold ------
      0.013   14.9   0.1      0.026   13.9   0.0    1.5  1  PF07819.8  PGAP1-like protein
      0.049   13.2   0.0      0.091   12.4   0.0    1.4  1  PF06057.6  Bacterial virulence protein (VirJ)
       0.05   12.9   0.0        0.1   11.9   0.0    1.4  1  PF02230.11 Phospholipase/Carboxylesterase
      0.064   12.6   0.0       0.11   11.8   0.0    1.5  1  PF01764.20 Lipase (class 3)
      0.083   12.0   0.0       0.12   11.5   0.0    1.2  1  PF05990.7  Alpha/beta hydrolase of unknown function (DUF900)
       0.12   11.1   0.0       0.19   10.4   0.0    1.2  1  PF12740.2  Chlorophyllase enzyme
       0.12   11.4   0.0       0.24   10.5   0.0    1.4  1  PF00326.16 Prolyl oligopeptidase family
       0.13   11.3   0.0        0.2   10.7   0.0    1.3  1  PF05057.9  Putative serine esterase (DUF676)


Domain annotation for each model (and alignments):
>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   1.2e-32   1.3e-29       3     244 ..      23     255 ..      21     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 1.2e-32
    PF10230.4   3 ilillipGNPGlvgfYetFlslLseklnpefevlgishaGheeeekekkak.eeekvfsLedQiehkidflkelvekkkkkkvklilvgHSvGaYialevlkrlseakfrikkvvlLfPtiediakSpngrkltklliklvllvlvavylvlllkllPesvksllirkvlgss...se.aveetaaelksprvvrqalhlakdEmreikedd.qdelikaaeenqkrlvfyfgkkDhWvpeetrdeli 244
                   +i+l+pGNPG++++Y + + ++s+     ++v++ +  G+++e+++     e     +Le+Qi+h++ ++ e+++      +++ lvgHS+Ga +a  +l++ +   +ri +v  ++P++ d+ +S    k    l++++ + l+a++l l+l l+P  +++ +++k  + +   s  a + t+  +++   +r +lh++ +E++  + ++  d+ +++   +qk  ++y + +D Wv +++  +++
  MMETSP0890-20130614|14323_1  23 AVIVLLPGNPGVAEYYYEIALTISQL--TMMNVIVLGWLGFASETNN--FWgEPAAAVTLENQIQHAKRVVAETFQ-----AKRIALVGHSIGALVAFDILCSQP---MRIGAVAAIMPFVADNFDSDIYTKKRS-LATFPGATLLAILLSLFLRLFPIPLRRAIMHKCGQPTdhmSSrARDLTVDTMTRLANLRSMLHMGISEFKSPRIQNgPDTRWHRY--AQKVGFIYASGEDAWVRSNHPTDMK 255
                  689*********************87..69***********999999..4425599********************.....579*********************...*******************99988777.899999999999999***************8777666555334777788889999**************9766665535555554..255677777889******9998886 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   2.9e-14   3.1e-11       1     191 [.      25     273 ..      25     287 .. 0.62

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 2.9e-14
                  EEE------------HHHHHHT..TTSEEEEE---------...--S...S--HHHHHHHHHHHHHH.--.--EEEE--------HHHHHH----.EEEEEEE------STT.........................---TTHHHHHHHHHH.......----....--H..HHHHH-----HHHHHH--GGGG....GG............................................------HHHHTT--S-EEEEE-----HHH CS
    PF12697.2   1 vvllHGlggsaeswrplaeaLa..agyrvvapDlpGhGrSd...rppdydpdtledlaadlaallda.lglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas.........................alrpagpsllrrlla.......graaalrdlaarafarlfdgdelealvradaaalaellraa............................................lldadlrealarldvPvlviageaDrvvp 191
                  +vll+G++g ae++ ++a  ++     +v+++ + G+   +   + +++ + tle++++ + +++++ ++++++ lvGHS G++va  ++ ++p ++ ++++i p++   +                           lr ++ +l r++++       + + ++rdl+ ++++r                                                                     + ++  ++++++++vP+ +i + +D  + 
  MMETSP0890-20130614|14323_1  25 IVLLPGNPGVAEYYYEIALTISqlTMMNVIVLGWLGFASETnnfWGEPAAAVTLENQIQHAKRVVAEtFQAKRIALVGHSIGALVAFDILCSQPMRIGAVAAIMPFVADNFDsdiytkkrslatfpgatllaillslFLRLFPIPLRRAIMHkcgqptdHMSSRARDLTVDTMTR------------------------LanlrsmlhmgisefkspriqngpdtrwhryaqkvgfiyasgedaWVRSNHPTDMKSIGVPTIFIDSNHDVCTR 273
                  89**************999997456899********9765533344447899***********996626669***********************************65555999999997666666665555555522222223333333222222221111222222222222........................11112222223333333333222222222222233666666666544444447888888888888888887665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   5.3e-11   5.6e-08       1      92 [.      24     135 ..      24     283 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 5.3e-11
    PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdlpghgas....egaa...........aakrvlaadlldleriilvGhSlGGgvalelagrd.drvkglvllapf....p 92 
                  ++vl++G+ g ++ y  +a ++++   ++v+++ + g  +      g++            akrv+ a+  +++ri+lvGhS+G+ va+ +  ++  r+ ++ ++ pf    +
  MMETSP0890-20130614|14323_1  24 VIVLLPGNPGVAEYYYEIALTISQLtMMNVIVLGWLGFASEtnnfWGEPaaavtlenqiqHAKRVV-AETFQAKRIALVGHSIGALVAFDILCSQpMRIGAVAAIMPFvadnF 135
                  69******************9999977889988655554432233233344444455566888888.877799*****************9998879********99744431 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.2e-07   0.00023       3      96 ..      53     145 ..      51     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.2e-07
                  EEEEE--------E....S.GGGGSHHHHHHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCHCHHHH CS
   PF00561.15   3 viglDlrGvgySspa.ggpelphyttddlardleavldalglkk.ltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvlnrgstl 96 
                  vi+l + G+++ +   +g++ + +t ++     ++v++++ + k ++lvGhS G++ a+  ++  p r+ a++++ ++  + d + sd++     +
  MMETSP0890-20130614|14323_1  53 VIVLGWLGFASETNNfWGEPAAAVTLENQIQHAKRVVAETFQAKrIALVGHSIGALVAFDILCSQPMRIGAVAAIMPF--VADNFDSDIYTK-KRS 145
                  78888899999995579*********************9999999********************************9..999999999998.333 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.012       3      83 ..      25     113 ..      23     117 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.2e-05
                  EEES------HHCCHHHHHHHSSS.EEEEEECCSTTC-.......---TTTTHHHHHHHHHHHHHHHH--S-SEEEE------HHHHHH CS
   PF00975.15   3 LfcfppagGsasvyrklarklpdp.lveflaiqlpgre.......rdepllesieelaeeyaealrqiqpegPyaLfGySlGGllAfev 83 
                  ++++p   G a++y+++a  +++  +  ++++ + g+         + + + ++e  ++     + ++ + +  aL+G+S G+l+Af++
  MMETSP0890-20130614|14323_1  25 IVLLPGNPGVAEYYYEIALTISQLtMMNVIVLGWLGFAsetnnfwGEPAAAVTLENQIQHAKRVVAETFQAKRIALVGHSIGALVAFDI 113
                  6789999999************9999999999999999864444222233345555555555555566666699*************86 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.5e-05     0.026      64     116 ..      76     127 ..      20     140 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-05
    PF07819.8  64 eylnqairkilslysssekeptsviliGHSmGGlVArsaltlpnyikdsvnti 116
                    l+++i++  +   +++ + +++ l+GHS+G lVA  +l  + ++ ++v  i
  MMETSP0890-20130614|14323_1  76 VTLENQIQHAKRVV-AETFQAKRIALVGHSIGALVAFDILCSQPMRIGAVAAI 127
                  45666666666666.6667889**************99998888877777776 PP

>> PF06057.6  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.7e-05     0.091       2      81 ..      22     109 ..      21     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.7e-05
    PF06057.6   2 dtlavlysGDgGWrdlDkeva...ealqkqgvpvvGv....dsLrYfWkertPe.evakDlariiktyakrwkvkkvvliGysfGADv 81 
                  d + vl+ G+ G ++   e+a   ++l  ++v v+G+    +    fW e   +  + + +++  ++ a+++++k+++l+G+s GA v
  MMETSP0890-20130614|14323_1  22 DAVIVLLPGNPGVAEYYYEIAltiSQLTMMNVIVLGWlgfaSETNNFWGEPAAAvTLENQIQHAKRVVAETFQAKRIALVGHSIGALV 109
                  77888889999999888888833345667788888863333345789998765515677899999999*****************955 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.7e-05       0.1      98     136 ..      89     127 ..      72     136 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.7e-05
   PF02230.11  98 lkkgipssriiigGFSqGaalalylaltspkplggivaf 136
                  +++  +++ri+++G S Ga +a+    ++p ++g + a+
  MMETSP0890-20130614|14323_1  89 VAETFQAKRIALVGHSIGALVAFDILCSQPMRIGAVAAI 127
                  4455899*************************9999875 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.11      44      78 ..      66     110 ..      18     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
                  H..........HHHHHHHHHHHHHHHHSTTSEEEEE-------HH CS
   PF01764.20  44 k..........sareqvlkelkrllekypdykivvtGHSLGGalA 78 
                  +          ++++q+++  + + e ++  +i ++GHS G+ +A
  MMETSP0890-20130614|14323_1  66 NnfwgepaaavTLENQIQHAKRVVAETFQAKRIALVGHSIGALVA 110
                  255556655657777777776669999999************988 PP

>> PF05990.7  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.12      53     112 ..      54     114 ..      33     149 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
    PF05990.7  53 vvfsWPsagklld.ynyDresaeasrdalekllrylatkksakkihllaHSmGtwlvleal 112
                  +v+ W   ++ ++ +  + + a+  +++++++ r +a++ +ak+i l+ HS G  ++   l
  MMETSP0890-20130614|14323_1  54 IVLGWLGFASETNnFWGEPAAAVTLENQIQHAKRVVAETFQAKRIALVGHSIGALVAFDIL 114
                  5666666555444133344456666788999999********************9998877 PP

>> PF12740.2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.19      89     131 ..      94     131 ..      65     152 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
    PF12740.2  89 dlsklalagHsrGgkvafalalglanakselkfsaligvdPva 131
                  +++++al gHs G  vaf++ + +      +++ a+ ++ P+ 
  MMETSP0890-20130614|14323_1  94 QAKRIALVGHSIGALVAFDILCSQ-----PMRIGAVAAIMPFV 131
                  3589****************9988.....66777888887876 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022      0.24      43     100 ..      76     132 ..      61     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00022
                  HHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE----- CS
   PF00326.16  43 nefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvd 100
                  ++++ +i+ a+ +++e   +++r+a+ G+S G +++  +l  +p +  a+ a  ++v 
  MMETSP0890-20130614|14323_1  76 VTLENQIQHAKRVVAE-TFQAKRIALVGHSIGALVAFDILCSQPMRIGAVAAIMPFVA 132
                  6788999999999999.56899**************************9999999874 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019       0.2      77      98 ..      88     115 ..      61     132 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
    PF05057.9  77 k......nkkiSfvghSlGgliaraaia 98 
                          k+i +vghS+G l+a  +++
  MMETSP0890-20130614|14323_1  88 VvaetfqAKRIALVGHSIGALVAFDILC 115
                  233345568************9876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.74
# Mc/sec: 968.26
//
Query:       MMETSP0890-20130614|14359_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.60
# Mc/sec: 195.70
//
Query:       MMETSP0890-20130614|14434_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       563  (0.0411791); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 214.41
//
Query:       MMETSP0890-20130614|14571_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-18   65.3   0.0    4.5e-18   64.9   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   3.3e-22   4.5e-18       5      93 ..      71     162 ..      68     163 .. 0.95

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 3.3e-22
                  --CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT....S.TT-EEEEEEEE CS
   PF00254.23   5 akegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk....ippnatlvfevel 93 
                  +k+gd + + ++g++ dg+vfd+ ++  +p+ +++G+g +ikg++e+l  m+ Ge++ l+ip +l++g+kg   +     ip+na+l++ev +
  MMETSP0890-20130614|14571_1  71 PKTGDLIAIRFKGSV-DGRVFDDITETPEPLYYRIGDGSLIKGIDEALPMMRLGETWNLIIPGNLGFGPKGRSASAgkprIPSNAELQYEVSI 162
                  89*************.********99********************************************9977669999***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 766.83
//
Query:       MMETSP0890-20130614|14577_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-07   29.3   0.0    7.8e-07   28.6   0.0    1.3  1  PF08373.5 RAP domain
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.16   11.4   0.0    1.1  1  PF10881.3 Protein of unknown function (DUF2726)


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.1e-10   7.8e-07       1      31 [.      33      66 ..      33      66 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.1e-10
    PF08373.5  1 ieidGpthFyrnsgvll...gktklKrriLtalG 31
                 ie+dGp+h+++  g  +   g tk+K riL +lG
  MMETSP0890-20130614|14577_1 33 IEVDGPSHYLKGKGTQRvenGRTKFKSRILGQLG 66
                 9********99996666699**********9998 PP

>> PF10881.3  Protein of unknown function (DUF2726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.16      67      99 ..      26      64 ..      20      67 .] 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.4e-05
    PF10881.3 67 dlkpvavIeldgashk......qgkaekrDalkeealek 99
                 + +  ++Ie+dg+sh+      q+  + r ++k+++l +
  MMETSP0890-20130614|14577_1 26 QPEAKIAIEVDGPSHYlkgkgtQRVENGRTKFKSRILGQ 64
                 557789***********99999999999*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       137  (0.0100205); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 286.71
//
Query:       MMETSP0890-20130614|14586_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   13.8   1.5      0.022   13.4   1.1    1.2  1  PF07263.6  Dentin matrix protein 1 (DMP1)
      0.048   12.7   0.4       0.79    8.7   0.3    2.0  1  PF11802.3  Centromere-associated protein K
       0.13   10.0   8.2       0.14    9.9   5.7    1.1  1  PF04147.7  Nop14-like family
       0.89    9.2   6.7        1.2    8.8   4.6    1.2  1  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF07263.6  Dentin matrix protein 1 (DMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.1   6.3e-06     0.022      83     128 ..     119     163 ..      58     174 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.3e-06
    PF07263.6  83 yvyrpaGGlsrstGkeGddkdddedesGddtfGdddsgpGpeerqe 128
                  y  r +  + r+ G + dd ddd  +  dd f +dd+++ p+ +q+
  MMETSP0890-20130614|14586_1 119 Y-VRATAPMPRKQGFGRDDDDDDYSDDDDDEFENDDKELPPKANQN 163
                  3.4777889999***9999999999****************99876 PP

>> PF11802.3  Centromere-associated protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3   0.00023      0.79     136     191 ..      72     130 ..      13     148 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00023
    PF11802.3 136 lkelqkelknkvrtlsesrifselkqkleklkeekeeLls...aLgefLeehfPLpeaq 191
                  ++ + ++ ++k r++s +r  +++++kl++l++e+ eLl    +L +++   +P+p +q
  MMETSP0890-20130614|14586_1  72 MRAQIDNGEEKDRRKSTNRAQEDITEKLQRLEHENAELLRktaVLVDYVRATAPMPRKQ 130
                  34444555667778888888888888888888888888852225777777888888776 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.7   4.1e-05      0.14     266     335 ..      81     156 ..      36     167 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.1e-05
    PF04147.7 266 padRtKTeeElakeeaerlkklEeeRlrRmrgeeeddeeeedse......kesaddlddefeedddenfglgsaee 335
                   +dR K+ ++ ++   e+l++lE e  +  r++ +  +  ++           +dd+dd++++ddd++f+++++e 
  MMETSP0890-20130614|14586_1  81 EKDRRKSTNRAQEDITEKLQRLEHENAELLRKTAVLVDYVRATApmprkqGFGRDDDDDDYSDDDDDEFENDDKEL 156
                  58************************9999998888777777667788777789999*************997664 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.6   0.00035       1.2     224     307 ..      38     152 ..       3     162 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00035
                  XXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXX............................----------------------- CS
    PF03153.8 224 qrikeleagklskalkqkkkqkksekkskie...........iQvDGagddssdeseedeeadede.......eekdkv............................ieeDlddseDDvseedeedlddt 307
                  +r+ +l +++ +  l   + q+        +           +Q+D   +++  +s++++++d          e    +                               D+dd  DD+s++d+++ +++
  MMETSP0890-20130614|14586_1  38 KRNAQLMKQQRAVLLAACEAQAAH------AqcadfagelmrAQIDNGEEKDRRKSTNRAQED--IteklqrlEH---EnaellrktavlvdyvratapmprkqgfgR--DDDD--DDYSDDDDDEFEND 152
                  222222222222222222222111......123344466667888876666666444433333..2112444422...133466777778888888888888878443..3333..44443333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1271  (0.0929637); expected 273.4 (0.02)
Passed bias filter:                      786  (0.0574898); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.78
# Mc/sec: 642.10
//
Query:       MMETSP0890-20130614|14608_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.89
# Mc/sec: 148.09
//
Query:       MMETSP0890-20130614|14624_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-13   47.5   1.7    4.2e-08   32.7   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.3e-12   47.3   0.3    1.4e-12   47.2   0.2    1.0  1  PF13424.1  Tetratricopeptide repeat
    9.6e-06   24.9   0.2    0.00028   20.3   0.1    2.0  2  PF13176.1  Tetratricopeptide repeat
    0.00011   21.4   1.8    0.00079   18.8   0.4    2.6  2  PF00515.23 Tetratricopeptide repeat
    0.00014   21.3   0.3    0.00026   20.4   0.2    1.5  1  PF13414.1  TPR repeat
     0.0012   18.7   1.0     0.0099   15.8   0.1    2.4  2  PF13431.1  Tetratricopeptide repeat
     0.0029   17.3   0.9      0.011   15.4   0.1    2.3  2  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.021   14.4   0.1    1.3  1  PF13181.1  Tetratricopeptide repeat
       0.02   15.2   0.0      0.035   14.4   0.0    1.4  1  PF13174.1  Tetratricopeptide repeat
      0.069   13.6   0.1       0.22   12.1   0.1    1.8  2  PF13428.1  Tetratricopeptide repeat
      0.077   13.5   0.1       0.09   13.3   0.1    1.3  1  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   1.4e-05     0.017      24      41 ..       1      18 [.       1      19 [. 0.93
   2 !   32.7   0.0   3.4e-11   4.2e-08       1      30 [.      20      50 ..      20      51 .] 0.92

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-05
    PF13374.1 24 leeealairrrllGddHP 41
                 l+e+al ir++ lG++H 
  MMETSP0890-20130614|14624_1  1 LHERALRIREEKLGPNHS 18
                 79***************5 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 3.4e-11
    PF13374.1  1 taaalnnLAlalrar.gryeeAlaleeeala 30
                 +a++lnnLAl+l +  g+++eA +l+e+al+
  MMETSP0890-20130614|14624_1 20 VATSLNNLALLLLKIqGKHDEAKPLYERALE 50
                 89********777777*************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.2   1.1e-15   1.4e-12      28      74 ..       2      50 ..       1      51 [] 0.96

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.1e-15
    PF13424.1 28 yekalel.lrelgddhpdtaralnnlanlyla.lgdydeAleylekAle 74
                  e+al +  ++lg++h ++a++lnnla l+l+ +g++deA++++e+Ale
  MMETSP0890-20130614|14624_1  2 HERALRIrEEKLGPNHSEVATSLNNLALLLLKiQGKHDEAKPLYERALE 50
                 79*****9999*********************999************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.075        93      21      34 ..       1      14 [.       1      16 [. 0.64
   2 !   20.3   0.1   2.3e-07   0.00028       1      27 [.      23      50 ..      23      51 .] 0.92

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.075
    PF13176.1 21 lyeraLaltkdpld 34
                 l+eraL+++++ l+
  MMETSP0890-20130614|14624_1  1 LHERALRIREEKLG 14
                 57787777766555 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 2.3e-07
    PF13176.1  1 allnLarlysr.lgdyekAielyeraLa 27
                 +l+nLa l  + +g++++A  lyeraL+
  MMETSP0890-20130614|14624_1 23 SLNNLALLLLKiQGKHDEAKPLYERALE 50
                 79***********************664 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.67   8.4e+02      25      32 ..       3      10 ..       2      12 .. 0.80
   2 !   18.8   0.4   6.4e-07   0.00079       4      29 ..      24      50 ..      21      51 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.67
                 HHHHHHHT CS
   PF00515.23 25 ekALelnP 32
                 e+AL++++
  MMETSP0890-20130614|14624_1  3 ERALRIRE 10
                 79999976 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 6.4e-07
                 HHHHHHHHHH.TT-HHHHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylk.lgkydeAleyyekALe 29
                 l+nl++++lk +gk+deA   ye+ALe
  MMETSP0890-20130614|14624_1 24 LNNLALLLLKiQGKHDEAKPLYERALE 50
                 666666665549**************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   2.1e-07   0.00026      27      66 ..       3      50 ..       1      51 [] 0.72

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.1e-07
    PF13414.1 27 ekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAle 66
                 e+Al+++     pn+ e    ++nlAl++lk   + +eA   ye+Ale
  MMETSP0890-20130614|14624_1  3 ERALRIReeklgPNHSEvatSLNNLALLLLKIQGKHDEAKPLYERALE 50
                 677876444455888666669999999999874467899999999987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     8e-06    0.0099      10      33 ..      15      42 ..       1      43 [. 0.76
   2 ?    1.6   0.1      0.29   3.6e+02       1       7 [.      44      50 ..      44      51 .] 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8e-06
    PF13431.1 10 Pnn...adaynnLAelll.nnGdleeAe 33
                 Pn+   a ++nnLA+lll  +G+++eA+
  MMETSP0890-20130614|14624_1 15 PNHsevATSLNNLALLLLkIQGKHDEAK 42
                 6666669999****9876268*****97 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.29
    PF13431.1  1 lyekale 7 
                 lye+ale
  MMETSP0890-20130614|14624_1 44 LYERALE 50
                 7*****9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.4     3e+03      25      30 ..       3       8 ..       2      11 .. 0.73
   2 !   15.4   0.1   8.9e-06     0.011      11      29 ..      32      50 ..      21      51 .] 0.79

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.4
                 HHHHHH CS
   PF07719.12 25 ekAlel 30
                 e+Al++
  MMETSP0890-20130614|14624_1  3 ERALRI 8 
                 688887 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 8.9e-06
                 HHHTT-HHHHHHHHHHHHH CS
   PF07719.12 11 yyklgdyeeAleafekAle 29
                 +  +g+++eA+ ++e+Ale
  MMETSP0890-20130614|14624_1 32 LKIQGKHDEAKPLYERALE 50
                 3459**************8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.7e-05     0.021       3      29 ..      23      50 ..      21      51 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-05
                 -TTT---HHHH.TT-HHHHHHHHH---H CS
    PF13181.1  3 ayynlGdiYrq.lGdydkAkeylekale 29
                 +++nl++++++  G++d+Ak  +e+ale
  MMETSP0890-20130614|14624_1 23 SLNNLALLLLKiQGKHDEAKPLYERALE 50
                 6899****9999**************98 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-05     0.035       5      28 ..      26      50 ..      26      51 .] 0.94

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.8e-05
                 HHHHHHHH.HHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyk.lgdtdeAlealerlik 28
                 +lal+++k +g++deA+ ++er ++
  MMETSP0890-20130614|14624_1 26 NLALLLLKiQGKHDEAKPLYERALE 50
                 69********************986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.5   1.9e+03      24      38 ..       6      21 ..       2      27 .. 0.57
   2 ?   12.1   0.1   0.00017      0.22       7      29 ..      27      50 ..      21      51 .] 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.5
    PF13428.1 24 lrrala.laPddaeal 38
                 lr   + l+P++ e+ 
  MMETSP0890-20130614|14624_1  6 LRIREEkLGPNHSEVA 21
                 3333332577777765 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00017
    PF13428.1  7 larall.alGdpdeAiallrrala 29
                 la +ll  +G +deA  l++ral+
  MMETSP0890-20130614|14624_1 27 LALLLLkIQGKHDEAKPLYERALE 50
                 666554269*************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.3e-05      0.09      28      58 ..      18      49 ..       1      51 [] 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.3e-05
    PF13432.1 28 Peaaeallllaeall.rlgrldeAaallraal 58
                  e a  l +la +ll  +g++deA  l+++al
  MMETSP0890-20130614|14624_1 18 SEVATSLNNLALLLLkIQGKHDEAKPLYERAL 49
                 45777888999999988899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      134  (0.00980105); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.57
# Mc/sec: 210.71
//
Query:       MMETSP0890-20130614|14633_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   13.8  16.5      0.019   13.3  11.4    1.3  1  PF02029.10 Caldesmon
      0.045   11.8  12.9      0.051   11.7   8.9    1.1  1  PF05262.6  Borrelia P83/100 protein
      0.075   12.7  11.0      0.084   12.5   7.6    1.2  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
       0.14    9.9   9.8       0.22    9.2   6.8    1.2  1  PF00012.15 Hsp70 protein
        0.4   10.8   6.6       0.82    9.8   4.6    1.5  1  PF07001.6  BAT2 N-terminus
          1   10.0   3.9       0.86   10.2   1.7    1.6  2  PF10349.4  WW-domain ligand protein
        4.4    5.7  10.8        5.5    5.4   7.5    1.2  1  PF07227.6  Protein of unknown function (DUF1423)


Domain annotation for each model (and alignments):
>> PF02029.10  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  11.4   9.9e-06     0.019     234     309 ..     104     189 ..      28     199 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.9e-06
   PF02029.10 234 efekl.kqkqqeaa...veleelkkkrEe..rr...kvleEEeqkkkqeeaerk..vReeeekrrlkeeierrraeaaekrqkvped 309
                  e+ ++ +++ +eaa    e+ee + + Ee  rr    + e E   +++eea r+  +R+eee+r+ +ee +++r+e a +r  + +d
  MMETSP0890-20130614|14633_1 104 EQMRIqREQAAEAArlqREAEE-RLRAEEaeRRaaeARAEAERIAREREEALRRerLRREEEERKRQEEAQKKREELAKHRHAILDD 189
                  2222202222333211112222.2222220022110233445556677777654225677777777788888888888888777665 PP

>> PF05262.6  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   8.9   2.6e-05     0.051     205     344 ..      20     190 ..       1     220 [. 0.51

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.6e-05
    PF05262.6 205 eresqedakraqvlkeeldkkqkdadkakkkadta...ednadkqrkevreklqe..............aknlpepadvsskkedkkv..aeekkreiekaqkeikk..kdeeak.kakdak..aedlkkeskaeek...........eaedkeleakkereevaeDlqkikeev 344
                  e+  + d +  q l+++ld+ + ++   +++ +++     +       v ++ ++              +   p p +v s +  +++  + e+  e+ + q+e+++  ++eea+ +a +a+  ae +++e   +e+           e  ++++ea+k+ree+a+    i ++ 
  MMETSP0890-20130614|14633_1  20 EMIIERDGQIFQ-LRQQLDRMETRLIAIQQQQQQNgltSSARTASNYVVGQQSRNydhsasftaspptvEATPPPPVHVDSWQAAEQMriQREQAAEAARLQREAEErlRAEEAErRAAEARaeAERIARE---REEalrrerlrreeEERKRQEEAQKKREELAKHRHAILDDL 190
                  555555555555.6666666665554443333322000222222222222332325666666666666655555666665544444333367777777777777664222444430334433443333333...11122233344443446888999999999998666555554 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.6   4.3e-05     0.084      93     202 ..     111     182 ..      31     215 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.3e-05
    PF05279.6  93 aeekekqkveeevkEqlkkvkeeivvke..eeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekskepveeaekekae 202
                   + +e ++++ e++E l+  + e  ++e   e+e+i++e +++ +++ l+++++er++++ea+k+ e                                        +  ++
  MMETSP0890-20130614|14633_1 111 EQAAEAARLQREAEERLRAEEAERRAAEarAEAERIAREREEALRRERLRREEEERKRQEEAQKKRE----------------------------------------ELAKH 182
                  1112223333333333333333333333333333344444444444444444444443333333333........................................33333 PP

>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.8   0.00011      0.22     504     573 ..     111     182 ..      94     198 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00011
                  --HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..GGGSSHHHH..HHHHHHHHHHHHHH CS
   PF00012.15 504 lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleee..kekvseaek..ekkveeaieelkee 573
                   ++ e +++++eaee   +++++++a+ea++e+e+++ + e++l  e  +   +e+e   +++ +++ eel ++
  MMETSP0890-20130614|14633_1 111 EQAAEAARLQREAEERLRAEEAERRAAEARAEAERIAREREEALRRErlR--REEEERkrQEEAQKKREELAKH 182
                  45678899************************************999542..3333322467777777777766 PP

>> PF07001.6  BAT2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.6   0.00042      0.82      90     165 ..      49     125 ..      45     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00042
    PF07001.6  90 kqeqsdekssavaaaqtpesqpaavsqssass.kpkpsqeatdevpggakswaqasakegaqgdgskasqlssfsre 165
                  +q+q++  ssa +a+++   q+  + + sas+   +p++eat+  p+++ sw  a++ +  +++ ++a++l++  +e
  MMETSP0890-20130614|14633_1  49 QQQQNGLTSSARTASNYVVGQQSRNYDHSASFtASPPTVEATPPPPVHVDSWQAAEQMRIQREQAAEAARLQREAEE 125
                  577777788888889999999999999999997789999**************887777766666655565554443 PP

>> PF10349.4  WW-domain ligand protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7   0.00044      0.86      16      99 ..      25     117 ..      24     125 .. 0.63
   2 ?   -2.8   0.0       4.8   9.4e+03      30      45 ..     129     144 ..     117     166 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00044
    PF10349.4  16 kkGGaieFaqlmvkaasrasraqplssengwlyiivdpaaavleplppyea...vYga.Pp..agygappag.....ygappggygappagneap 99 
                  ++G ++   q++ ++ +r+   q+++++ng   ++ +++++v+ ++  + +   ++ a Pp  +++ +p  +     ++a++++  ++ ++ ea+
  MMETSP0890-20130614|14633_1  25 RDGQIFQLRQQLDRMETRLIAIQQQQQQNGLTSSARTASNYVVGQQSRNYDhsaSFTAsPPtvEATPPP--PvhvdsWQAAEQMRIQREQAAEAA 117
                  578899999************999999998844444444444444333222233333347743333333..235888888888877777766655 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.8
    PF10349.4  30 aasrasraqplsseng 45 
                  a ++ +ra +++ e+ 
  MMETSP0890-20130614|14633_1 129 AEEAERRAAEARAEAE 144
                  4444455544444443 PP

>> PF07227.6  Protein of unknown function (DUF1423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.5    0.0028       5.5     353     426 ..     103     178 ..      21     192 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0028
    PF07227.6 353 delesivrlkqaeaemfqkkadeark..eaerlkrivlakkekieeeYaskllklrleeaeeekrkkleelkllee 426
                   e  +i r + aea   q+ a+e  +  eaer    ++a  e+i  e  + l + rl   eee++++ e  k+ ee
  MMETSP0890-20130614|14633_1 103 AEQMRIQREQAAEAARLQREAEERLRaeEAERRAAEARAEAERIAREREEALRRERLRREEEERKRQEEAQKKREE 178
                  4445788889999999999999975422666666667777899999999999999999999999988887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1844  (0.134874); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                       115  (0.00841135); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.44s 00:00:01.30 Elapsed: 00:00:01.15
# Mc/sec: 475.14
//
Query:       MMETSP0890-20130614|14690_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-17   61.1   0.1      6e-17   61.0   0.0    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   4.4e-21     6e-17       1      45 [.       4      50 ..       4      51 .] 0.96

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 4.4e-21
    PF08373.5  1 ieidGpthFyrnsgvll..gktklKrriLtalGwkvisipyfeWnel 45
                 ie+dGp h+++ ++++   g tk+K r L++lGw +i+ipyfeW  l
  MMETSP0890-20130614|14690_1  4 IEVDGPAHYLKCTDKYIenGRTKFKSRVLRQLGWSIIHIPYFEWDAL 50
                 9************999999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 200.35
//
Query:       MMETSP0890-20130614|14869_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-26   90.6   0.1    5.5e-14   51.9   0.2    2.1  2  PF13847.1  Methyltransferase domain
    2.2e-24   86.0   0.1    7.1e-13   49.0   0.0    2.3  2  PF12847.2  Methyltransferase domain
    4.7e-23   81.4   0.2    2.2e-10   40.7   0.0    2.3  2  PF08242.7  Methyltransferase domain
    1.2e-20   73.6   0.0    3.9e-09   36.7   0.0    2.3  2  PF08241.7  Methyltransferase domain
    4.2e-13   49.4   0.0    8.3e-06   25.9   0.0    2.4  2  PF13649.1  Methyltransferase domain
      2e-09   37.2   0.0    1.1e-05   25.0   0.0    2.4  2  PF13489.1  Methyltransferase domain
    5.7e-09   35.4   0.0    0.00077   18.7   0.0    2.3  2  PF05175.9  Methyltransferase small domain
    5.2e-07   29.5   0.0     0.0033   17.3   0.0    2.9  2  PF13659.1  Methyltransferase domain
    9.1e-07   28.5   0.0      0.026   14.0   0.0    2.4  2  PF13679.1  Methyltransferase domain
    3.2e-06   26.2   0.0     0.0013   17.6   0.0    2.2  2  PF02390.12 Putative methyltransferase
    0.00038   19.7   0.0       0.18   11.0   0.0    2.2  2  PF05401.6  Nodulation protein S (NodS)
     0.0014   17.6   0.0       0.01   14.7   0.0    1.9  2  PF02353.15 Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.046   12.8   0.0        3.3    6.7   0.0    2.7  3  PF01795.14 MraW methylase family
      0.074   11.9   0.0       0.36    9.6   0.0    1.9  2  PF07091.6  Ribosomal RNA methyltransferase (FmrO)
       0.12   11.0   0.0       0.31    9.7   0.0    1.6  2  PF05219.7  DREV methyltransferase
       0.15   11.0   1.2       0.47    9.4   0.8    1.8  1  PF03466.15 LysR substrate binding domain
       0.16   10.6   0.2        2.3    6.8   0.0    2.2  2  PF03291.11 mRNA capping enzyme


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.2   6.8e-17   5.5e-14       2     112 ..      42     160 ..      41     196 .. 0.86
   2 !   36.6   0.0   3.4e-12   2.7e-09       2     112 ..     279     396 ..     278     433 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 6.8e-17
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdiee.leklle......esfDlvisnevl........naladpqkvlkeiervlkpggrlivesps 112
                  +++ ++l +GCG  +l+ +l     + a+++ iD s + ie++k+     +   +eF+++d+++ + + l+      es+D +i+++ l        n ++  q ++k+++r+lk+ gr+iv+s+ 
  MMETSP0890-20130614|14869_1  42 DKERRILVIGCGHSDLSKKLK-DTFSAARIISIDSSRNCIERMKKT----ES-DLEFYVADATNlMHT-LPdglnkaESYDTIIDKGCLdailayenNGQNEAQRCIKQVRRLLKETGRFIVVSCT 160
                  56778999*************.77999******************5....33.4889******95554.566788***********9999999*******************************98 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 3.4e-12
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle..esfDlvisnevl..........naladpqkvlk.eiervlkpggrlivesps 112
                  ++ + +l++GCG+  l+ +l  +  p++++ G D  +eai+  +er     + ++  +++d+ +l + l+  + fD+v+++++           +  +d+ kv+  ei++ l+p+  ++++ ++
  MMETSP0890-20130614|14869_1 279 QKICYFLEVGCGNSPLASQLL-NRFPNIRYLGTDVVPEAIQQQRER-----YPQLDLRVADARHLTRDLPssSYFDVVFDKGTAdalflyddsiHGTNDHVKVYLdEISHILHPDHGIFLVAAC 396
                  567889***************.779********************8.....7777788999999776655579********7776667788888999999998766999999997555554444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   8.8e-16   7.1e-13       1     112 []      43     159 ..      43     159 .. 0.89
   2 !   35.0   0.0     2e-11   1.6e-08       6     112 .]     285     396 ..     281     396 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 8.8e-16
    PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsller......fDavllkgltldallal.....deprrvlealpkllkpggrlviesp 112
                  k++ril +GcG+ +ls  l + +  a+++++D s++++e++++        + +e++ +da +   +l +       +D +++kg +lda la+      e +r+++++++llk  gr+++ s+
  MMETSP0890-20130614|14869_1  43 KERRILVIGCGHSDLSKKLKDTFSAARIISIDSSRNCIERMKKTE------SDLEFYVADAtNLMHTLPDGlnkaesYDTIIDKG-CLDAILAYenngqNEAQRCIKQVRRLLKETGRFIVVSC 159
                  689***************************************999......78999999995444444444888999********.********99988888889***************9987 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 2e-11
    PF12847.2   6 lDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsller....fDavllkgltldallal........deprrvlealpkllkp.ggrlviesp 112
                  l++GcG+  l+  l++++p+ +++g D  +e++++ re+       ++++l+ +da +   +l  +    fD+v++kg t dal+ +        d ++ +l+++ + l+p +g++++ ++
  MMETSP0890-20130614|14869_1 285 LEVGCGNSPLASQLLNRFPNIRYLGTDVVPEAIQQQRERY------PQLDLRVADArHLTRDL--PsssyFDVVFDKG-TADALFLYddsihgtnDHVKVYLDEISHILHPdHGIFLVAAC 396
                  9***************************************......99********4333333..34688********.6666666655777788888888**********9999998876 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.2e-12     1e-09       1      99 []      48     154 ..      48     154 .. 0.95
   2 !   40.7   0.0   2.7e-13   2.2e-10       1      95 [.     285     386 ..     285     390 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.2e-12
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl........kdirevldnirklLkpgGvl 99 
                  L iGcG ++l++ l + ++ ++++ +D s++ ie+ k+  ++ e + +++ nl ++  + l + +s+D+++  ++l ++        ++ ++ ++++r+lLk  G++
  MMETSP0890-20130614|14869_1  48 LVIGCGHSDLSKKLKDTFSAARIISIDSSRNCIERMKKTESDLEFYVADATNLMHTLPDGLNKAESYDTIIDKGCLDAIlayenngqNEAQRCIKQVRRLLKETGRF 154
                  569*****************************************99999999999998888777***************************************9986 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 2.7e-13
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl...........kdirevldnirklLkp 95 
                  Le+GcG++ l++ ll+++p+i+y+g+D+ p+ai++ +e+  + + + +++ +l +   ++    s+fDvv+  ++  +l           ++++ +ld+i + L+p
  MMETSP0890-20130614|14869_1 285 LEVGCGNSPLASQLLNRFPNIRYLGTDVVPEAIQQQRERYPQLDLRVADARHLTRDLPSS----SYFDVVFDKGTADALflyddsihgtnDHVKVYLDEISHILHP 386
                  8*****************************************998666666666555443....5******99999999888877777777777888888888877 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   4.9e-12   3.9e-09       1      95 []      48     156 ..      48     156 .. 0.91
   2 !   34.8   0.0     2e-11   1.6e-08       1      90 [.     285     387 ..     285     393 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 4.9e-12
    PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeel..pfedn.....sfDvvvssevlehl........edpekalkeiaRvLkpgGllvi 95 
                  L +GcG+  l+++l++  +aar++ +D s + ++++k+  ++   e+ vada++l   ++d+     s+D ++   +l  +        ++ ++++k+++R+Lk+ G++++
  MMETSP0890-20130614|14869_1  48 LVIGCGHSDLSKKLKDTfSAARIISIDSSRNCIERMKKTESDL--EFYVADATNLmhTLPDGlnkaeSYDTIIDKGCLDAIlayenngqNEAQRCIKQVRRLLKETGRFIV 156
                  569****************************999777766665..6*****9999997777666777***********9999**************************986 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 2e-11
    PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeel..pfe.dnsfDvvvssevlehl...........edpekalkeiaRvLkpg 90 
                  L+vGcG+  l+++l +r p+ r++g+D+ +e++++ +er+++ +  l+vada++l  +++ +++fDvv+   +   l           + ++ +l+ei  +L p+
  MMETSP0890-20130614|14869_1 285 LEVGCGNSPLASQLLNRfPNIRYLGTDVVPEAIQQQRERYPQLD--LRVADARHLtrDLPsSSYFDVVFDKGTADALflyddsihgtnDHVKVYLDEISHILHPD 387
                  89*********9999999**********************9987..99***9999999996679****9999998888888888888777777889999888886 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.9e-07   0.00023       1      97 [.      47     148 ..      47     159 .. 0.74
   2 !   25.9   0.0     1e-08   8.3e-06       1      99 [.     284     386 ..     284     389 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.9e-07
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaral....p...feegefdlvvcaglsle......hlspkqlealleeiarvl 97 
                  il +GCG+ +   +l + +   +++r+i +D s + +e  k++ s    + +f++ada++l    p    +++++d ++  g+ l+           ++++ ++++ r+l
  MMETSP0890-20130614|14869_1  47 ILVIGCGHSDLSKKLKDTF---SAARIISIDSSRNCIERMKKTES----DLEFYVADATNLmhtlPdglNKAESYDTIIDKGC-LDailayeNNGQNEAQRCIKQVRRLL 148
                  6789**************9...569******************94....899******9974444233368889999998777.66444322122334444555555555 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1e-08
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralp............feegefdlvvcaglslehlspkqlealleeiarvlkp 99 
                  +l++GCG+   + +l +++   p++r++g D+ +ea+++ +er+    ++ +  +adar+l             f++g+ d+ +++  s++ +++ + +  l+ei+++l p
  MMETSP0890-20130614|14869_1 284 FLEVGCGNSPLASQLLNRF---PNIRYLGTDVVPEAIQQQRERY----PQLDLRVADARHLTrdlpsssyfdvvFDKGTADALFLYDDSIHGTNDHVKV-YLDEISHILHP 386
                  59****************9...78********************....889999999988743333555655668999999999999988887776655.58888888776 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.4e-08   1.1e-05      19     134 ..      40     176 ..      25     193 .. 0.80
   2 !    9.9   0.0   0.00063      0.51      25     114 ..     283     393 ..     257     446 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.4e-08
    PF13489.1  19 rlkpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk.akqaqksqfdeedaae..........pagkfdlivarevlehvpdpe........ellrqiaellkpgGylllstpnaslasdeafakwdylv 134
                  ++ +  r+L iGcG+ +l++ l++ +   +++ +D+s++ i++ +k+  +  f+  da++          +a+++d+i+   +l  +   e        + ++q+++llk+ G ++++   +++++d  f+  +   
  MMETSP0890-20130614|14869_1  40 YDDKERRILVIGCGHSDLSKKLKDTFSaaRIISIDSSRNCIERmKKTESDLEFYVADATNlmhtlpdglnKAESYDTIIDKGCLDAILAYEnngqneaqRCIKQVRRLLKETGRFIVVSCTRDHDEDLNFDGYQGGS 176
                  5667789***************99854459*************977777777777775555555544444777******99999999966666666666********************999988888888766555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00063
    PF13489.1  25 rvLDiGcGtGillellaengf..dvtgvDpspaaigk.......................akqaqksqfdeedaaepagkfdlivar.evlehvpd.peellrqiaellkpg.Gylll 114
                   +L++GcG+ +l++ l  +++  ++ g D  p+ai+                         + +++++f       ++g++d   +  ++++   d ++ +l++i  +l p+ G++l+
  MMETSP0890-20130614|14869_1 283 YFLEVGCGNSPLASQLLNRFPniRYLGTDVVPEAIQQqrerypqldlrvadarhltrdlpSSSYFDVVF-------DKGTADALFLYdDSIHGTNDhVKVYLDEISHILHPDhGIFLV 393
                  57********9999885554435899****999998777777776666666655555553333333333.......667888666665677766654778888888888888444444 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.5e-07   0.00077      31     141 ..      43     159 ..      38     170 .. 0.80
   2 !   14.2   0.0   2.4e-05     0.019      34      82 ..     283     331 ..     272     352 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.5e-07
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----...--EEE-STTTT--..--BS-EEE--------...HHHHHHHHHHH---GGGB-----EEEEEE CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen..vevlasdlleeve.ekkfdlivsNPPfhagk...atelevaerliaeAkkhLkegGeLllVan 141
                  +++++l +GcG   l+ +l++  + +++  +D +++ +e  k++ ++ ++    ++ l + l + ++ ++++d+i+    + a     +  ++ a+r i++ ++ Lke G++++V  
  MMETSP0890-20130614|14869_1  43 KERRILVIGCGHSDLSKKLKDTFSAARIISIDSSRNCIERMKKTESDLEFYVadATNLMHTLPDGLNkAESYDTIIDKGCLDAILayeNNGQNEAQRCIKQVRRLLKETGRFIVVSC 159
                  6788999**********************************99988877654345555555555555567******99996665511156678899****************99965 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.4e-05
                  ---B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----. CS
    PF05175.9  34 kvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen 82 
                   +l++GcG+ +l+ +l+++ p+++   +D+  +A++  ++ + + +l+ 
  MMETSP0890-20130614|14869_1 283 YFLEVGCGNSPLASQLLNRFPNIRYLGTDVVPEAIQQQRERYPQLDLRV 331
                  48**********************************9999887766654 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012      0.96       3     116 ..      46     159 ..      44     160 .. 0.74
   2 !   17.3   0.0   4.1e-06    0.0033       5      75 ..     285     351 ..     283     449 .] 0.90

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
    PF13659.1   3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellra.....gsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvlivp 116
                  r+l +gcG   +   + +   aa++++++ ++++++  +++ +       +++ ++d+++l + l++     +s+d ++          ++++ ++ + + +++ +rllk+ G++ ++++
  MMETSP0890-20130614|14869_1  46 RILVIGCGHSDLSKKLKDTFsAARIISIDSSRNCIERMKKTES------DLEFYVADATNLMHTLPDglnkaESYDTIIDKGCLDAILAYENNGQNEAQRCIKQVRRLLKETGRFIVVSC 159
                  6777777777777777777678888888888888776665543......45789999999966666555555677777766666555677778888899******************998 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 4.1e-06
    PF13659.1   5 ldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellrags.fdlvv 75 
                  l++gcG+  ++ ++l +  +++ lg+++ p+a++  ++++++       ++r++d+r+l++ l+++s fd+v+
  MMETSP0890-20130614|14869_1 285 LEVGCGNSPLASQLLNRFpNIRYLGTDVVPEAIQQQRERYPQL------DLRVADARHLTRDLPSSSyFDVVF 351
                  899************9999*********************876......56999**99998898866366664 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.2e-05     0.026      24      83 ..      42      97 ..      32     118 .. 0.82
   2 !   11.7   0.0   0.00017      0.14      21      79 ..     276     330 ..     262     360 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-05
    PF13679.1 24 egsltvvDvGaGkgYLafvlasylkeke.yklkvvgidvkeelvekaeelaeklgkkfnks 83
                 +++ +++ +G+G++ L++ l++          ++++id +++ +e+ ++ +++l+ ++++ 
  MMETSP0890-20130614|14869_1 42 DKERRILVIGCGHSDLSKKLKD-----TfSAARIISIDSSRNCIERMKKTESDLEFYVADA 97
                 567788999*************.....337889*******************999665444 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00017
    PF13679.1  21 akeegsltvvDvGaGkgYLafvlasylkeke.yklkvvgidvkeelvekaeelaeklgkk 79 
                  +k+++ ++ ++vG+G++ La+ l       +  +++ +g dv +e++++ +e+  +l  +
  MMETSP0890-20130614|14869_1 276 EKKQKICYFLEVGCGNSPLASQLLN-----RfPNIRYLGTDVVPEAIQQQRERYPQLDLR 330
                  56888999*************9999.....447999**************9998888744 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0049       3.9      16      72 ..      40     101 ..      24     116 .. 0.78
   2 !   17.6   0.0   1.6e-06    0.0013      13      83 ..     272     339 ..     264     351 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0049
                  SGGGB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH.....--TTB- CS
   PF02390.12  16 feneqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal.....glkNlr 72 
                  ++++++ +l IG+G +d+  +l   +    ++ i+ +++ +e++ k+  +l     + +Nl 
  MMETSP0890-20130614|14869_1  40 YDDKERRILVIGCGHSDLSKKLKDTFSAARIISIDSSRNCIERMKKTESDLefyvaDATNLM 101
                  4555557888*******************************888777766655555555554 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1.6e-06
                  TTTSGGGB-..EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH--TTB------HHHHHH CS
   PF02390.12  13 kklfeneqk..lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiealglkNlrilegdaekvle 83 
                  ++++e++qk   +le+G+G++ +  +l +++P++ +lG ++  + ++++ ++  +l+l   r+   da+ +++
  MMETSP0890-20130614|14869_1 272 QSVIEKKQKicYFLEVGCGNSPLASQLLNRFPNIRYLGTDVVPEAIQQQRERYPQLDL---RVA--DARHLTR 339
                  6788888888889*********************************999998888766...333..4555555 PP

>> PF05401.6  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0047       3.8      47     148 ..      47     160 ..      38     199 .. 0.71
   2 !   11.0   0.0   0.00023      0.18      35      87 ..     272     326 ..     256     401 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0047
                  --EE------HHHHHGG..GBSSEEEEES-TTT---HHHHTTT-SSEEEEES-TTT-........--SS-BS-EE....E-S-GGGS.SSHHHHHHHHHHHHHTB-----EEE-EE- CS
    PF05401.6  47 alevGcaaGafteklap..yckrltvidvvpeaierarervkksshisWvvsdvqqf........steekfdliv....vaevlyyl.edveelraavenlvkllapdgqlvfGsar 148
                   l +Gc    +++kl     + r+  id   + ier ++     s++ + v+d +++        +++e +d+i+       +l y  +  +e +  ++ + +ll+  g+++  s  
  MMETSP0890-20130614|14869_1  47 ILVIGCGHSDLSKKLKDtfSAARIISIDSSRNCIERMKK---TESDLEFYVADATNLmhtlpdglNKAESYDTIIdkgcLDAILAYEnNGQNEAQRCIKQVRRLLKETGRFIVVSCT 160
                  58899*999999999751156788888888888888764...3578888888877642222222267899****94442234555541567889999************99987753 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00023
                  HHHHH----B----EE------HHHHHGGGBS..SEEEEES-TTT---HHHHTTT CS
    PF05401.6  35 lrlslaqgavanalevGcaaGafteklapyck..rltvidvvpeaierarervkk 87 
                    +  ++++++  levGc    ++ +l       r    dvvpeai++ rer  +
  MMETSP0890-20130614|14869_1 272 QSVIEKKQKICYFLEVGCGNSPLASQLLNRFPniRYLGTDVVPEAIQQQRERYPQ 326
                  5566678899999***********999765541255568***********99865 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05      0.01      65     181 ..      46     173 ..      42     186 .. 0.83
   2 ?    0.4   0.0      0.31   2.5e+02      66     112 ..     284     331 ..     277     413 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-05
                  EEEE-------HHHHHHHHH-.-EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---..TT---..--SEEEE---GGGT......--TCHHHHHHHHHHCS-----EEEEEEE---HHHHCC---- CS
   PF02353.15  65 tlLdiGcGWGslvrraveryd.vkvvglTlSkeqaklakqrvdeldlerkvevklldy..edlde..kvdrvvsvgafehv......gkenydtffkklkkllkedGllllhtitslhkkelaerglk 181
                  ++L iGcG   l ++  + +  ++++++  S++  +++k++  +l++      +l++     l++   +d ++  g ++++      g+++ ++ +k++ +llke G++++ + t+ h + l+  g +
  MMETSP0890-20130614|14869_1  46 RILVIGCGHSDLSKKLKDTFSaARIISIDSSRNCIERMKKTESDLEFYVADATNLMHTlpDGLNKaeSYDTIIDKGCLDAIlayennGQNEAQRCIKQVRRLLKETGRFIVVSCTRDHDEDLNFDGYQ 173
                  7899***************97368*************9999999887655555544421144555559*****99999999999999*******************************9998877765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.31
                  EEE-------HHHHHHHHH.--EEE--BS-HHHHHHHHHHHHCS-SSS CS
   PF02353.15  66 lLdiGcGWGslvrravery.dvkvvglTlSkeqaklakqrvdeldler 112
                   L++GcG   l+ +  +r+ +++ +g  +  e  +++++r  +ldl+ 
  MMETSP0890-20130614|14869_1 284 FLEVGCGNSPLASQLLNRFpNIRYLGTDVVPEAIQQQRERYPQLDLRV 331
                  799****99999999999867888888888888888888888877643 PP

>> PF01795.14  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.99   7.9e+02      34      87 ..      57     106 ..      49     122 .. 0.62
   2 ?    2.4   0.0     0.087        70     210     241 ..     127     158 ..     119     165 .. 0.85
   3 ?    6.7   0.0    0.0041       3.3      18      71 ..     277     331 ..     268     347 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.99
   PF01795.14  34 HsealLeklselrligidrDkealeaakerlkkfkkrvtliksnfaklkellke 87 
                   s++l +++s+ r+i id  ++ +e+    +kk ++ ++++ ++  +l ++l++
  MMETSP0890-20130614|14869_1  57 LSKKLKDTFSAARIISIDSSRNCIER----MKKTESDLEFYVADATNLMHTLPD 106
                  35677778888999999999999954....455555555555555555555554 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.087
   PF01795.14 210 RIavNdEleelkelleaalelLapgGrlavis 241
                    + N+  +e ++ ++++ +lL++ Gr+ v+s
  MMETSP0890-20130614|14869_1 127 LAYENNGQNEAQRCIKQVRRLLKETGRFIVVS 158
                  556688888999******************98 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0041
   PF01795.14  18 vkedg.vyiDaTlGaggHsealLeklselrligidrDkealeaakerlkkfkkrv 71 
                   k++  +++ +  G++  + +lL++++++r++g d  +ea+++ +er  + + rv
  MMETSP0890-20130614|14869_1 277 KKQKIcYFLEVGCGNSPLASQLLNRFPNIRYLGTDVVPEAIQQQRERYPQLDLRV 331
                  444444789999********************************99988777776 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.59   4.7e+02     106     149 ..      44      87 ..      34     105 .. 0.85
   2 ?    9.6   0.0   0.00045      0.36      99     149 ..     274     324 ..     269     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.59
    PF07091.6 106 pasvlDlaCgLnplavpwmklaedatylasDidkalvefieafl 149
                   +++l ++Cg   l+       + a+++++D +++++e +++  
  MMETSP0890-20130614|14869_1  44 ERRILVIGCGHSDLSKKLKDTFSAARIISIDSSRNCIERMKKTE 87 
                  6789999********9999999999*********9999887765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00045
    PF07091.6  99 vfealptpasvlDlaCgLnplavpwmklaedatylasDidkalvefieafl 149
                  v+e+ +++   l ++Cg  pla   +++ ++++yl+ D+  + ++  ++  
  MMETSP0890-20130614|14869_1 274 VIEKKQKICYFLEVGCGNSPLASQLLNRFPNIRYLGTDVVPEAIQQQRERY 324
                  6666777778899*************************9877776665555 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00039      0.31      92     136 ..      41      87 ..      28     105 .. 0.86
   2 ?   -3.1   0.0       3.2   2.5e+03      91     119 ..     277     305 ..     259     330 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00039
    PF05219.7  92 dqedkklldlGaGdGeitkrvaptfee..vyatelsetmrdrlkkkk 136
                  d +++++l +G G  +++k++++tf+   + + + s + ++r+kk +
  MMETSP0890-20130614|14869_1  41 DDKERRILVIGCGHSDLSKKLKDTFSAarIISIDSSRNCIERMKKTE 87 
                  66889********************98779999****9999999865 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.2
    PF05219.7  91 sdqedkklldlGaGdGeitkrvaptfeev 119
                   +q+    l++G G+  ++ ++ + f ++
  MMETSP0890-20130614|14869_1 277 KKQKICYFLEVGCGNSPLASQLLNRFPNI 305
                  44566678999999999888888887664 PP

>> PF03466.15  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.8   0.00058      0.47      16      49 ..     308     339 ..     305     431 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00058
                  THHCHHHHHHHHHHHHSTTSEEEEEEE-CHHHHH CS
   PF03466.15  16 laayllppllarfraryPdvelelvegdseelld 49 
                  l++ ++p+++++ r+ryP+++l++  +   +l +
  MMETSP0890-20130614|14869_1 308 LGTDVVPEAIQQQRERYPQLDLRVADAR--HLTR 339
                  78999****************9998666..5544 PP

>> PF03291.11  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.13     1e+02      61     103 ..      41      84 ..      31     103 .. 0.73
   2 ?    6.8   0.0    0.0029       2.3      88     114 ..     306     332 ..     272     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.13
   PF03291.11  61 eknkrkvLdldcGkGgDLeKyekggIs..klvgtDidessieeaq 103
                  ++++r++L ++cG   DL K  k   s  +++++D + + ie+ +
  MMETSP0890-20130614|14869_1  41 DDKERRILVIGCGH-SDLSKKLKDTFSaaRIISIDSSRNCIERMK 84 
                  5589999*****98.799998776654116777777776666544 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0029
   PF03291.11  88 klvgtDidessieeaqeRYkklnsrsk 114
                  +++gtD+  ++i++ +eRY +l+ r+ 
  MMETSP0890-20130614|14869_1 306 RYLGTDVVPEAIQQQRERYPQLDLRVA 332
                  599****************88877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.86u 0.42s 00:00:01.28 Elapsed: 00:00:00.99
# Mc/sec: 1086.83
//
Query:       MMETSP0890-20130614|14880_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.60
# Mc/sec: 351.47
//
Query:       MMETSP0890-20130614|14915_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.57
# Mc/sec: 1086.62
//
Query:       MMETSP0890-20130614|15004_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-104  348.8   0.1   1.5e-104  348.4   0.1    1.1  1  PF01761.15 3-dehydroquinate synthase
    5.7e-13   48.6   3.1    9.6e-12   44.6   2.2    2.1  1  PF13685.1  Iron-containing alcohol dehydrogenase
    4.4e-09   35.3   6.5    3.7e-08   32.2   4.5    1.9  1  PF00465.14 Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> PF01761.15  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.4   0.1  3.2e-108  1.5e-104       2     260 ..     107     367 ..     106     368 .. 0.98

  Alignments for each domain:
  == domain 1    score: 348.4 bits;  conditional E-value: 3.2e-108
                  EEE----TTSSCCCHHHHHHHHHCSS--TT-EEEEE----TTT----HHHHTT---EEEE---SHHHHHCTT------BB-------B------SEEEEEGGGGCCS-HHHHH---HHHHHHHHTT-HHHHHHHHHCCHHCHH--THCCHHHHHHHHHHHHHHHHHHTTT----GGGGG-------CCCHHCTT.TS----TTT---HHHHHHHHH-----HHHHHHHHHHHHH-----STT-H..--HHHHHHHHTT-TT- CS
   PF01761.15   2 lvvpdgEksKsletlekllealleaklerksliialGGGvvgDlaGfvAatylRGvrfiqvPTtllaqvDssvGgKtginlpegKNliGaFyqPkaVlidlevLktlpkrelraGlaEviKyaliadaelfelleeeaeallkekeeealeeliarsvevkaevveeDekekglralLnlGHtigHaiEallgy.kllHGeaVaiGmvlaaelseklgllkeeeverllkllkklglptslkel..ldveellealkkDkkv 260
                  +v+pdgE++Ks+e+l+++l+++l++k++rk + +a+GGGv+gD++Gf+Aa+y+RGv+fiq+PTtl+a+vDssvGgKt++n+p+gKN+iGaFyqPk V++d++ L+tlp++e+ +G++E+iKy+li+da++fe+ ee++++l++ +e++al+e+++rs+  ka+vv++Deke g+ra+LnlGHt+gHaiE+++gy ++lHGeaVaiG+++aa++s++lg+++++  er+++ll++++lp+sl+++  +++e +l++++ Dkkv
  MMETSP0890-20130614|15004_1 107 FVIPDGEEYKSMEVLNEILDWALKMKFDRKCTFVAVGGGVIGDVVGFAAAIYQRGVDFIQIPTTLMAMVDSSVGGKTAVNHPKGKNMIGAFYQPKVVVADTNALSTLPDKEFFSGISEIIKYGLIRDADFFEWQEENMDKLVH-REPNALSEAVERSCINKAAVVAADEKEAGVRATLNLGHTFGHAIETHAGYgTFLHGEAVAIGTAMAAHMSHHLGWIDDQLQERTIALLTRANLPVSLPSHfdATPEIFLDLMSLDKKV 367
                  789***************************************************************************************************************************************99998.59*************************************************************************************************9667999***********7 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   2.2   2.1e-15   9.6e-12      11     249 ..      65     308 ..      56     309 .. 0.73

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.1e-15
    PF13685.1  11 geilkklklkkvlvvadentyka.agekveeslke..agvevevleeleeeadleaveklvealrekdad...lvvavGsGtinDlaKyvs..aklgkpyisvpTa..aSmDGyaspgasltvdngkkktlspaklPiaiiaDldiikkAPkrliasGfGDllgkitaladwklaeevaeeiaekaaelvqealeklledekdeealkellealalsglamsrpaSgaeHllShalemea..kpllHGekV 249
                  + ++++ k+k+v++++  ++ +  ++e+v+++l++  ++++v v+ + ee++++e ++++++ + + ++d   ++vavG+G i D++ +++  +++g+++i +pT+  a +D  +  + ++ + +g k  +     P++++aD++ +++ P++   sG+ +++ k+  + d  + e  +e +++ + +   +al +++    ++  +++ + + a +  a  r+     H + ha+e  a    +lHGe V
  MMETSP0890-20130614|15004_1  65 EVWIQHIKGKSVAIITNDRVDSFgYAETVARNLAKydKNINVFVIPDGEEYKSMEVLNEILDWALKMKFDrkcTFVAVGGGVIGDVVGFAAaiYQRGVDFIQIPTTlmAMVDSSVGGKTAVNHPKG-KNMIGAFYQPKVVVADTNALSTLPDKEFFSGISEII-KYGLIRDADFFEWQEENMDKLVHREP-NALSEAV----ERSCINKAAVVAADEKEAGVRATLNLGHTFGHAIETHAgyGTFLHGEAV 308
                  457788899*******999999889999999998622566777888899999********99998888888889***************994558899*******944567888888888888654.544546778*************************98.67777776666666665555555543.3333333....3344444444444444444455555668888888887655667888877 PP

>> PF00465.14  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   4.5   8.2e-12   3.7e-08       4     284 ..      55     320 ..      53     355 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 8.2e-12
                  EEE---GGGGHHHHHTTT.S.EEEEEEEHHHHHTHHHHHHH.....HC---EEEEEE.E-----HHHHHHHHTTS-T.T--...EEE------HHHHHHHHHHHTT...................--BEE--SS..-S-S-TT-SEEEEE-----EE.EEEE-S.--SEEE--HHHHHHS-HHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHH.HH----HHHHHH.HHHHTT....-------.....----HHHHHH---G...-GGGS----TTT--HHHHH.... CS
   PF00465.14   4 ivfgegaleelgeelkkl.g.kvlivtdkslkklglldkvlesL..eeagievtvfdgvepeptleeveeaaalareekad...vivAvGGGsviDtAKaiallltnpgelldyegkakkkkkpalpliaiPTt..aGtGsevtplavitdeetkrklslaspkllPdlaivDpeltltlPkrvtaatglDalthaiEayvskkanplsdalaeeairliaenlpravadpedleareqmllastlAGlafsn.....aglgaaHalahalg...glfgipHGeavaillpavlrfna 284
                  i++g+g l++ +  +++  g +v i+t   + ++g++++v+ +L   +++i+v v+ + e+  + e ++e+++ a + k+d   ++vAvGGG + D+   +a++++ +                 + +i iPTt  a  +s v   + + ++++k  ++       P++++ D++ + tlP + + +++  ++   +   +     ++  ++ ee +  +++  p+a++++  +e r+ +  a+++A  a ++     a l++ H ++ha+    g+  + HGeavai+++  + + +
  MMETSP0890-20130614|15004_1  55 IYIGPGLLDD-EVWIQHIkGkSVAIITNDRVDSFGYAETVARNLakYDKNINVFVIPDGEEYKSMEVLNEILDWALKMKFDrkcTFVAVGGGVIGDVVGFAAAIYQRG-----------------VDFIQIPTTlmAMVDSSVGGKTAVNHPKGKNMIGA---FYQPKVVVADTNALSTLPDKEFFSGISEIIKYGLIRDA-----DFF-EWQEENMDKLVHREPNALSEA--VE-RSCINKAAVVA--ADEKeagvrATLNLGHTFGHAIEthaGYGTFLHGEAVAIGTAMAAHMSH 320
                  6777777777.6777788536******999**************66678999999999999***************999964447*********************44.................9*******943455888888888887766655444...448***********************999977653333.....222.466666666666566665544..33.66666666666..3332312223444455555555444335569********9766654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.43s 00:00:01.22 Elapsed: 00:00:00.64
# Mc/sec: 1520.19
//
Query:       MMETSP0890-20130614|15006_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-13   49.9   0.0    4.8e-13   48.9   0.0    1.6  1  PF02798.15 Glutathione S-transferase, N-terminal domain
      3e-05   23.8   0.0    5.6e-05   22.9   0.0    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    5.3e-05   23.2   0.0    8.9e-05   22.5   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    7.6e-05   22.5   0.0    0.00016   21.5   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain
    0.00093   18.9   0.0     0.0019   17.9   0.0    1.7  1  PF13410.1  Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.7e-16   4.8e-13       3      75 ..      30     103 ..      28     104 .. 0.91

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.7e-16
                  EEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT....S-SSEEEET...TTEEEESHHHHHHHHH CS
   PF02798.15   3 ltlfnhrgraeslrillaekgveyeivrvdfeagegkspewlklnpki....grvPaledg...dglklteSlAIarYla 75 
                  l +fn+ g ae +r+l+a++gv++e+ r +       ++e+++l+       g+vPale+    +  +lt++ AI+rYl 
  MMETSP0890-20130614|15006_1  30 LLYFNIEGKAEAIRLLFAYAGVQFEDYRFK------DRAEFMSLKESGrlqfGQVPALEIEngdQTIVLTQTSAILRYLG 103
                  77************************6555......1399*******999***********999999***********96 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     2e-08   5.6e-05      34      95 .]     172     235 ..     162     235 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2e-08
                  HHHHHHHHHHHH..TSSSSSSS.S-BHHHHHHHHHHHHHHHHTTTTTHTT-HHHHHHHHHHHHSH CS
   PF00043.20  34 levlealeeels..gkkylvGd.kltlADialfpalewlqrldgnfleeefPklkawlkriaarp 95 
                   + l++l++ l+  g  +l+G+ ++++AD+++ + l   ++ ++ +l ++fP+l+++ k + ++p
  MMETSP0890-20130614|15006_1 172 PKHLDMLTKLLQagGTSWLAGTqQPSIADFVWCQQLKLTAESKPGIL-DNFPQLTSYIKAFYSLP 235
                  678999999999*******997369**********************.***********999887 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.3e-08   8.9e-05      10      73 ..      39     108 ..      30     110 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 3.3e-08
                  HHHHHHHHHH----EEE----TTTTHHHHHHH-..TT--SSEEE--.--...EEESHHHHHHHHHHH--- CS
    PF13417.1  10 arkvrlaLeekglpyelvevtpgkkrpellaln..pkgkvPvLedd.ge...vltdSlvIieyLeerfpg 73 
                  a+ +rl+  ++g+++e +  +      +l++      g+vP+Le++ g+   vlt++ +I++yL ++f++
  MMETSP0890-20130614|15006_1  39 AEAIRLLFAYAGVQFEDYRFKDRAEFMSLKESGrlQFGQVPALEIEnGDqtiVLTQTSAILRYLGKEFKP 108
                  56789999999998887765333333344444477899*****96645579*************999875 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.7e-08   0.00016       5      69 ..      39     104 ..      37     105 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.7e-08
                  HHHHHHHHHH----EEEEEEH....TTSHHHHHHHH----.....--SEEE.----...EEESHHHHHHHHHH CS
    PF13409.1   5 ahRvlialalkgledeisvvplepkgfekseellalsprg.....tVPvLwdkdgt...vineSseIlrylne 69 
                  a+ +++++a++g+++e   +       ++ +e+  l+ +g     +VP+L++++g    v++ +s+Ilryl +
  MMETSP0890-20130614|15006_1  39 AEAIRLLFAYAGVQFEDYRF-------KDRAEFMSLKESGrlqfgQVPALEIENGDqtiVLTQTSAILRYLGK 104
                  66789999999999997666.......4457887777665445558******9665679***********975 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.8e-07    0.0019      11      69 .]     171     230 ..     120     230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.8e-07
                  TT-THGGG------SS...----.---HHHHHHHHHHHHHHHHH------TT----HHHHHH CS
    PF13410.1  11 lraaLdaleahLadgp..fllGd.rpslaDialapflvrldaagpgldireayPnlrawler 69 
                  l ++Ld l ++L +g+  +l+G  +ps+aD+++  +l  +   +pg  i++ +P l  ++++
  MMETSP0890-20130614|15006_1 171 LPKHLDMLTKLLQAGGtsWLAGTqQPSIADFVWCQQLKLTAESKPG--ILDNFPQLTSYIKA 230
                  56799999999999999****************9999999888886..68889988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 814.10
//
Query:       MMETSP0890-20130614|15102_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.55
# Mc/sec: 226.56
//
Query:       MMETSP0890-20130614|15196_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   27.2   1.5      2e-06   26.9   1.1    1.1  1  PF07466.6  Protein of unknown function (DUF1517)
  ------ inclusion threshold ------
      0.072   13.2   1.7       0.11   12.6   1.2    1.3  1  PF05531.7  Nucleopolyhedrovirus P10 protein
       0.13   11.0   6.6       0.21   10.3   4.6    1.3  1  PF14362.1  Domain of unknown function (DUF4407)
       0.18   11.4   1.4       0.45   10.2   1.0    1.7  1  PF14070.1  Putative motility protein
       0.46    9.8   4.3       0.61    9.4   2.9    1.2  1  PF05529.7  B-cell receptor-associated protein 31-like
        5.5    6.4   9.5        4.2    6.7   5.3    1.7  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   1.1   8.6e-10     2e-06       1     122 [.      27     145 ..      27     153 .. 0.54

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 8.6e-10
    PF07466.6   1 aaasGGriGGgsfrapsrssssprssspsgggygsssssygggys..gggfgfpflipifgfGggflglfgllilvaivgvlvnalrsaggge.egessaeasndkvsvvklqvgLlasakelqk 122
                  aa+sGGr GG+sf+ +  ++ +p++   ++++            s  g g+g       +g Ggg ++  ++++ + ++  +v+  r+a     + e +++  +d++++  l+  L a+   lq+
  MMETSP0890-20130614|15196_1  27 AARSGGRAGGSSFSRSAPRTAAPARTTVRRYSAPVAV-PVPVPVSpfGYGYGGY----GYGYGGG-ISPGTAYLGLSLIDTIVQEQRRAALMRqQLETQQKLGRDNAEIEALKKQLDAQEARLQE 145
                  599***********66555555555444444333222.1111112123222222....3777776.55556667777777777777776665544444445555555565555556777777663 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   4.8e-05      0.11      28      57 ..     120     149 ..      99     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.8e-05
    PF05531.7  28 ddvqenlpdvtelnekLdaqsaqLaeletk 57 
                  +++  +  +++ l+++Ldaq a L+el+++
  MMETSP0890-20130614|15196_1 120 QKLGRDNAEIEALKKQLDAQEARLQELQAQ 149
                  5677788899*****************986 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.6   9.3e-05      0.21     119     166 ..     104     151 ..      97     153 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.3e-05
    PF14362.1 119 qeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevq 166
                  qe+ +aa  + +   ++kl++ +aei+al+++ld+++a++++++++++
  MMETSP0890-20130614|15196_1 104 QEQRRAALMRQQLETQQKLGRDNAEIEALKKQLDAQEARLQELQAQAD 151
                  34444444344444788**************************99886 PP

>> PF14070.1  Putative motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.0    0.0002      0.45      10      36 ..     119     146 ..     105     150 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
    PF14070.1  10 qaklqqd.vgiavlKkamDaqeenaaql 36 
                  q+kl  d + i  lKk++Daqe+  ++l
  MMETSP0890-20130614|15196_1 119 QQKLGRDnAEIEALKKQLDAQEARLQEL 146
                  89999999**************999887 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.9   0.00027      0.61     122     184 ..      98     151 ..      94     154 .] 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00027
    PF05529.7 122 lvselvkleeklealkkqaesatkaakklkeekekklkeeveklkkeleekekdlealkkqae 184
                  l+ ++v+++  +  +++q e         +++k  ++++e+e+lkk+l+++e  l+ l+ qa+
  MMETSP0890-20130614|15196_1  98 LIDTIVQEQRRAALMRQQLE---------TQQKLGRDNAEIEALKKQLDAQEARLQELQAQAD 151
                  55556666665555555555.........446677899***********************97 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.32   7.3e+02      12      31 ..     102     121 ..      92     122 .. 0.58
   2 ?    6.7   5.3    0.0019       4.2      17      49 ..     120     152 ..     115     154 .] 0.87

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.32
   PF04977.10  12 gksgllalyqlkqeiaalqa 31 
                  +++ +++   ++q+++++q+
  MMETSP0890-20130614|15196_1 102 IVQEQRRAALMRQQLETQQK 121
                  44555555556666666664 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0019
   PF04977.10  17 lalyqlkqeiaalqaelaklkaeneeLeaevkd 49 
                  ++l + ++ei+al+++l++++a+ +eL+a+ ++
  MMETSP0890-20130614|15196_1 120 QKLGRDNAEIEALKKQLDAQEARLQELQAQADK 152
                  56677899********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1128  (0.0825044); expected 273.4 (0.02)
Passed bias filter:                      722  (0.0528087); expected 273.4 (0.02)
Passed Vit filter:                       128  (0.0093622); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 615.06
//
Query:       MMETSP0890-20130614|15209_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 227.45
//
Query:       MMETSP0890-20130614|15302_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   13.3   7.5      0.028   13.3   5.2    1.0  1  PF07767.6 Nop53 (60S ribosomal biogenesis)
      0.091   12.4   0.1       0.16   11.6   0.0    1.4  1  PF08758.6 Cadherin prodomain like


Domain annotation for each model (and alignments):
>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.2   4.1e-06     0.028     276     340 ..       3      67 ..       1      87 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.1e-06
    PF07767.6 276 krKtkaqRnkekrrkelekeakeekelkkkeeqlarlkeikkevaekekeraekkeerkekaekk 340
                  krK ++++ ++ + k++e++  +  +  ++++++++++ +k+++a  ++++a +ke++++k+e++
  MMETSP0890-20130614|15302_1   3 KRKQSQSKTRIVKGKKKEQQHFMISASDHEHRKMNEIDLLKAQLAISQAQLAAAKESQSTKKEEN 67 
                  8****************************************************999888555443 PP

>> PF08758.6  Cadherin prodomain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05      0.16      65      88 ..      18      41 ..      10      43 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.3e-05
                 SSS-EEEEEEEEETTTTEEEEEEE CS
    PF08758.6 65 lseqvkflvtardsetrekaevkv 88
                 ++eq +f+++a+d+e+r++ e+ +
  MMETSP0890-20130614|15302_1 18 KKEQQHFMISASDHEHRKMNEIDL 41
                 57899*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       914  (0.066852); expected 273.4 (0.02)
Passed bias filter:                      581  (0.0424956); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 445.64
//
Query:       MMETSP0890-20130614|15301_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-28   97.5   0.0    5.3e-28   96.7   0.0    1.4  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    1.3e-06   28.3   0.3    2.4e-06   27.4   0.2    1.5  1  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   7.7e-32   5.3e-28       2      94 .]     133     221 ..     132     221 .. 0.96

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 7.7e-32
                  SB---CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23   2 pkkakegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  p+ ++ g+tV+vhy+g+l dgtvfdss++r++p++f +   qvikg++egl+ m++G+ ++ltip++laYg++g     ip +atl fevell
  MMETSP0890-20130614|15301_1 133 PS-PTSGSTVKVHYTGTLIDGTVFDSSRERGEPAQFALA--QVIKGWQEGLLLMQEGGSAKLTIPSDLAYGDNGS-SDRIPGGATLAFEVELL 221
                  66.99*********************************9..8*********************************.668************97 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   3.5e-10   2.4e-06      26     123 ..      32     125 ..      11     126 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3.5e-10
   PF01346.13  26 sYaiGaslgknlkeqleeq..ldkdallkGlqdalagkesklteeeiqkvlqalqkklqakqeekakkkaeenkaegeaFlaenkkkeGVktteSGLqYk 123
                   +a+G++l++++++ +      + ++++kG+         +l++ ++++ l++  + +++  + +a k+ e+ k++g++Fl + +++eG ++t+SGL ++
  MMETSP0890-20130614|15301_1  32 LFAFGVNLATRYADVKRLFndDEIKEIVKGIDGY------LLDNVDAESLLREKATAINEMLSMRAMKAVENEKEKGKEFLIQAAEREGATQTDSGLVFE 125
                  5677777777665544431113445566666444......477778888888888888888888888889***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 975.07
//
Query:       MMETSP0890-20130614|15303_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-33  111.1  10.2    6.5e-10   37.4   0.0    4.2  4  PF00036.27 EF hand
    5.7e-29   99.9   9.0    2.6e-15   56.1   0.5    2.3  2  PF13499.1  EF-hand domain pair
    3.3e-28   94.8   6.9    6.8e-10   37.8   0.0    4.2  4  PF13405.1  EF-hand domain
    1.6e-23   80.7   9.1    2.4e-07   29.6   0.0    4.4  4  PF13202.1  EF hand
    6.8e-23   79.9   6.6    2.7e-10   39.5   0.3    4.2  4  PF13833.1  EF-hand domain pair
    4.4e-06   26.2   4.5       0.04   13.5   0.2    3.1  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
    1.2e-05   25.2   0.2       0.13   12.2   0.1    2.1  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
     0.0027   17.1   0.7      0.088   12.2   0.3    2.8  2  PF05042.8  Caleosin related protein
     0.0057   16.0   0.6       0.14   11.5   0.2    2.2  2  PF04876.7  Tenuivirus major non-capsid protein
      0.008   16.2   0.1       0.48   10.5   0.0    2.3  2  PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
  ------ inclusion threshold ------
      0.012   15.0   1.6        9.9    5.7   0.0    3.4  3  PF04760.10 Translation initiation factor IF-2, N-terminal region
      0.079   12.5   0.0       0.12   11.9   0.0    1.4  1  PF03562.12 MltA specific insert domain
       0.08   11.9   0.0       0.15   11.1   0.0    1.3  1  PF11814.3  Peptidase_C39 like family
      0.089   12.4   1.5        2.3    7.8   0.0    3.0  3  PF05099.8  Tellurite resistance protein TerB
       0.11   12.3   0.1         20    5.2   0.0    3.9  5  PF09373.5  Pseudomurein-binding repeat
       0.12   11.9   0.4         21    4.7   0.0    2.6  2  PF09124.5  T4 recombination endonuclease VII, dimerisation
       0.12   12.3   0.5       0.42   10.6   0.1    1.9  2  PF03963.9  Flagellar hook capping protein - N-terminal region
       0.12   12.5   1.6          3    8.0   0.2    2.5  2  PF13155.1  Toprim-like
       0.15   11.9   1.8        2.1    8.2   0.1    2.3  2  PF08726.5  Ca2+ insensitive EF hand
       0.17   11.9   2.1       0.17   11.9   0.1    2.0  2  PF11450.3  Protein of unknwon function (DUF3008)
       0.38   10.9   2.8       0.31   11.2   0.6    1.9  1  PF03448.12 MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   9.9e-13   6.5e-10       1      29 []      21      49 ..      21      49 .. 0.96
   2 !   29.6   0.6   3.3e-10   2.1e-07       2      28 ..      58      84 ..      57      85 .. 0.91
   3 !   18.1   0.1   1.6e-06     0.001       1      28 [.      94     121 ..      94     122 .. 0.91
   4 !   30.3   0.1   1.9e-10   1.3e-07       1      28 [.     130     157 ..     130     158 .. 0.96

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 9.9e-13
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkkl 29
                 e++eaF++fD+Dg+G+I+ +E+k+a+++l
  MMETSP0890-20130614|15303_1 21 EIREAFNLFDTDGSGTIDPKELKAAMQSL 49
                 79************************985 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 3.3e-10
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                 + +++  +D+D++G I+feEf++++++
  MMETSP0890-20130614|15303_1 58 IYQMIGDIDRDNSGSIDFEEFLDMMTA 84
                 568999*******************86 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.6e-06
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  +++++F++fD D++G+I++  +k++ k+
  MMETSP0890-20130614|15303_1  94 DIQKVFNLFDDDQTGHITLRNLKRVAKE 121
                  589****************999998876 PP

  == domain 4    score: 30.3 bits;  conditional E-value: 1.9e-10
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  el+e+++ +D+D+dG Is +Ef ++++k
  MMETSP0890-20130614|15303_1 130 ELMEMIERADTDQDGEISPDEFYAIMTK 157
                  799***********************97 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.5     4e-18   2.6e-15       2      66 .]      22      82 ..      21      82 .. 0.91
   2 !   48.1   1.3   1.3e-15   8.7e-13       2      66 .]      95     155 ..      86     155 .. 0.96

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 4e-18
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                 ++eaF+l+D+dg+g++d+ eL+++++ lg     e + + +++ ++++D +++G ++feEfl ++
  MMETSP0890-20130614|15303_1 22 IREAFNLFDTDGSGTIDPKELKAAMQSLG----FEAKNQTIYQMIGDIDRDNSGSIDFEEFLDMM 82
                 899**************************....66666666666******************997 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 1.3e-15
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  ++++F+l+D d++g+++   L+r++k lg+ +sd e+ e+    ++++D+++dG +s +Ef++++
  MMETSP0890-20130614|15303_1  95 IQKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELMEM----IERADTDQDGEISPDEFYAIM 155
                  6779************************************....******************997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     1e-12   6.8e-10       1      31 []      21      50 ..      21      50 .. 0.96
   2 !   18.5   0.2   1.7e-06    0.0011       9      27 ..      65      83 ..      60      89 .. 0.92
   3 !   23.1   0.1   5.8e-08   3.7e-05       2      31 .]      95     123 ..      94     123 .. 0.91
   4 !   16.8   0.0   6.2e-06     0.004       7      28 ..     136     157 ..     130     160 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1e-12
                 HHH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrkslg 31
                 e+reaF+lfD+dg+G+id +EL++a++ slg
  MMETSP0890-20130614|15303_1 21 EIREAFNLFDTDGSGTIDPKELKAAMQ-SLG 50
                 79************************9.887 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.7e-06
                 C-------B---HHHHHHH CS
    PF13405.1  9 fDkdgdGkidaeELrdaLr 27
                 +D+d++G id+eE++d+++
  MMETSP0890-20130614|15303_1 65 IDRDNSGSIDFEEFLDMMT 83
                 7****************98 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 5.8e-08
                  HH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrkslg 31 
                  ++++F+lfD+d++G i++  L+++ +  lg
  MMETSP0890-20130614|15303_1  95 IQKVFNLFDDDQTGHITLRNLKRVAK-ELG 123
                  89*********************998.665 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 6.2e-06
                  GCC-------B---HHHHHHH. CS
    PF13405.1   7 klfDkdgdGkidaeELrdaLrk 28 
                  +  D+d+dG+i+ +E+ ++++k
  MMETSP0890-20130614|15303_1 136 ERADTDQDGEISPDEFYAIMTK 157
                  567****************984 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.6e-10   2.4e-07       1      23 [.      22      44 ..      22      46 .. 0.90
   2 !   15.2   0.9   1.4e-05     0.009       8      23 ..      65      80 ..      61      82 .. 0.88
   3 !   16.4   0.0   5.6e-06    0.0037       1      24 [.      95     118 ..      95     119 .. 0.94
   4 !   21.9   0.0     1e-07   6.6e-05       5      24 ..     135     154 ..     131     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 3.6e-10
                 HHHHHHHH--S----B-HHHHHH CS
    PF13202.1  1 lkdtFrafDlNgDGkIsreELkr 23
                 ++++F+ fD++g+G+I+++ELk+
  MMETSP0890-20130614|15303_1 22 IREAFNLFDTDGSGTIDPKELKA 44
                 6778*****************98 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.4e-05
                 H--S----B-HHHHHH CS
    PF13202.1  8 fDlNgDGkIsreELkr 23
                 +D +++G I++eE+  
  MMETSP0890-20130614|15303_1 65 IDRDNSGSIDFEEFLD 80
                 9*************65 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 5.6e-06
                  HHHHHHHH--S----B-HHHHHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                  ++++F+ fD +  G I+   Lkr+
  MMETSP0890-20130614|15303_1  95 IQKVFNLFDDDQTGHITLRNLKRV 118
                  799******************997 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 1e-07
                  HHHH--S----B-HHHHHHH CS
    PF13202.1   5 FrafDlNgDGkIsreELkrl 24 
                   +++D++ DG Is++E++++
  MMETSP0890-20130614|15303_1 135 IERADTDQDGEISPDEFYAI 154
                  6789*************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   6.3e-08   4.1e-05      25      54 .]      20      49 ..      11      49 .. 0.92
   2 !   39.5   0.3   4.1e-13   2.7e-10       3      52 ..      35      83 ..      34      85 .. 0.95
   3 !    8.4   0.2    0.0021       1.4      25      43 ..      93     111 ..      91     113 .. 0.89
   4 !   32.4   0.1   7.1e-11   4.6e-08       1      53 [.     106     157 ..     106     158 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 6.3e-08
    PF13833.1 25 eevdilfrefDtdgdGkisfeEFcvllerl 54
                 ee+++ f++fDtdg+G i+ +E ++++++l
  MMETSP0890-20130614|15303_1 20 EEIREAFNLFDTDGSGTIDPKELKAAMQSL 49
                 689999*********************975 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 4.1e-13
    PF13833.1  3 GlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52
                 G I+++eLk a+++lg +  ++++++ ++  +D+d++G i+feEF+++++
  MMETSP0890-20130614|15303_1 35 GTIDPKELKAAMQSLGFE-AKNQTIYQMIGDIDRDNSGSIDFEEFLDMMT 83
                 89**********889999.******************************7 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0021
    PF13833.1  25 eevdilfrefDtdgdGkis 43 
                  e+++ +f++fD d+ G i+
  MMETSP0890-20130614|15303_1  93 EDIQKVFNLFDDDQTGHIT 111
                  78999************98 PP

  == domain 4    score: 32.4 bits;  conditional E-value: 7.1e-11
    PF13833.1   1 ekGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                  ++G It  +Lkr ++ lg   +s+ e+ +++  +Dtd+dG is +EF++ +++
  MMETSP0890-20130614|15303_1 106 QTGHITLRNLKRVAKELGET-MSDAELMEMIERADTDQDGEISPDEFYAIMTK 157
                  5899********88888999.***************************98875 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.5     0.001      0.67      46      69 ..      56      82 ..      18      88 .. 0.68
   2 !   13.5   0.2   6.1e-05      0.04       7      69 ..      93     155 ..      86     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.001
    PF12763.2 46 ekiwd.ladided..gkldfeefciam 69
                 + i++ + did d  g++dfeef  +m
  MMETSP0890-20130614|15303_1 56 QTIYQmIGDIDRDnsGSIDFEEFLDMM 82
                 44444146776653489******8776 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 6.1e-05
    PF12763.2   7 leikkyweifsglkpednkltg.dkvapvlknskleedklekiwdladidedgkldfeefciam 69 
                   +i+k +++f+  +  + +l + ++va  l    +++ +l ++ + ad d+dg++  +ef  +m
  MMETSP0890-20130614|15303_1  93 EDIQKVFNLFDDDQTGHITLRNlKRVAKEL-GETMSDAELMEMIERADTDQDGEISPDEFYAIM 155
                  578899999988777776665523444444.45789999*********************8877 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00034      0.22      52     111 ..      18      79 ..       6      81 .. 0.87
   2 !   12.2   0.1   0.00019      0.13      49     111 ..      88     152 ..      79     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00034
    PF10591.4  52 ckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                    e+++  Fn +Dt+  + ++ +El++  ++l     ++ i +++   D d+ ++i++eE+ 
  MMETSP0890-20130614|15303_1  18 EIEEIREAFNLFDTDGSGTIDPKELKAAMQSLgfEAKNQTIYQMIGDIDRDNSGSIDFEEFL 79 
                  56778889*******************99998766677889999999999999*******96 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00019
    PF10591.4  49 skeckeaveWkFnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                   k  +e ++  Fn +D ++ ++++ + l+ + ++l     ++   e+++++D+d+d++is +E+ 
  MMETSP0890-20130614|15303_1  88 DKDTREDIQKVFNLFDDDQTGHITLRNLKRVAKELgeTMSDAELMEMIERADTDQDGEISPDEFY 152
                  55677888899***********************987667778899*****************96 PP

>> PF05042.8  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3   0.00013     0.088       5      48 ..      18      61 ..      14     149 .. 0.92
   2 ?    0.9   0.0      0.39   2.5e+02      14      31 ..     136     153 ..     124     160 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
    PF05042.8  5 emsvlqkhvaffdrnkdGivyPwetyqGlralGfnvivsvvlai 48
                 e  ++++   +fd+++ G++ P e    +++lGf+    ++  +
  MMETSP0890-20130614|15303_1 18 EIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQM 61
                 56677778889************************988877665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.39
    PF05042.8  14 affdrnkdGivyPwetyq 31 
                     d+++dG + P e y 
  MMETSP0890-20130614|15303_1 136 ERADTDQDGEISPDEFYA 153
                  556899999999999886 PP

>> PF04876.7  Tenuivirus major non-capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00079      0.51      86     125 ..      59      98 ..      40     111 .. 0.84
   2 !   11.5   0.2   0.00022      0.14      83     160 ..      77     158 ..      75     161 .] 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00079
    PF04876.7  86 eellgaedetenslidlgkflkllqdklGdWitknylkhv 125
                   +++g +d ++++ id+ +fl+++  k+ d  t++ +++v
  MMETSP0890-20130614|15303_1  59 YQMIGDIDRDNSGSIDFEEFLDMMTAKMSDKDTREDIQKV 98 
                  689999***999****************998887766555 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00022
    PF04876.7  83 sfleellgaedetenslidlgkflkllqdklGdWitknylkhvnr.....mskdqikelleqiielakaessdteeyekvikk 160
                   fl+ + +   +++++  d+ k+++l+ d   + it   lk+v +     ms   + e++e        e s +e y  + kk
  MMETSP0890-20130614|15303_1  77 EFLDMMTAKM-SDKDTREDIQKVFNLFDDDQTGHITLRNLKRVAKelgetMSDAELMEMIERADTDQDGEISPDEFYAIMTKK 158
                  5777666655.5556669**********************9986533333777777777777766666777778888777776 PP

>> PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00074      0.48      24      53 ..      10      45 ..       7      74 .. 0.63
   2 ?    3.8   0.0     0.092        60      26      72 ..      85     136 ..      76     146 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00074
    PF13720.1 24 kRrgfskeeikalkkaykllyrsg.l.....tleea 53
                 +R g+s+eei+++++a++l   +g +     +l+ a
  MMETSP0890-20130614|15303_1 10 ERPGLSEEEIEEIREAFNLFDTDGsGtidpkELKAA 45
                 689**************9887666343333333333 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.092
    PF13720.1  26 rgfskeeikalkkaykllyrsg.l.tleealeeleeelae...speveelld 72 
                  +  +k++ + ++k+++l   ++ +  +  +l+++++el+e   ++e++e+++
  MMETSP0890-20130614|15303_1  85 KMSDKDTREDIQKVFNLFDDDQtGhITLRNLKRVAKELGEtmsDAELMEMIE 136
                  4455677778888888776644223233444555555555333666666665 PP

>> PF04760.10  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.015       9.9      39      52 ..      14      27 ..      13      28 .. 0.92
   2 ?    4.8   0.0     0.031        20      15      34 ..      37      55 ..      35      58 .. 0.79
   3 ?    1.5   0.1      0.33   2.1e+02       9      22 ..     118     133 ..     115     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.015
   PF04760.10 39 Ldeetaellaeefg 52
                 L+ee++e+++e+f+
  MMETSP0890-20130614|15303_1 14 LSEEEIEEIREAFN 27
                 9***********97 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.031
   PF04760.10 15 vkskeiikkLfkelGievks 34
                 +++ke+ + + ++lG+e k+
  MMETSP0890-20130614|15303_1 37 IDPKELKAAM-QSLGFEAKN 55
                 6889998888.88***9776 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.33
   PF04760.10   9 LAkelg..vkskeiik 22 
                  +Akelg  ++ +e+++
  MMETSP0890-20130614|15303_1 118 VAKELGetMSDAELME 133
                  79***98888888887 PP

>> PF03562.12  MltA specific insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.12      82     121 ..      29      70 ..      19     115 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
                  HHH---EEEE-----EEE..EEEEEE----------HHHH-- CS
   PF03562.12  82 lqvQGSgrlkledgkllr..igYagkngrpytsiGrilverg 121
                      GSg ++ ++ k     +g+++kn+  y++iG i  ++ 
  MMETSP0890-20130614|15303_1  29 FDTDGSGTIDPKELKAAMqsLGFEAKNQTIYQMIGDIDRDNS 70 
                  5668*****99985543336***************9955543 PP

>> PF11814.3  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.15      32      72 ..      15      55 ..       6      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
    PF11814.3 32 rseElklWReattifmtsGhGGcsplGLalaaarrGfevev 72
                 ++eE++  Rea  +f t G G  +p+ L  a ++ Gfe++ 
  MMETSP0890-20130614|15303_1 15 SEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKN 55
                 57899999*****************************9975 PP

>> PF05099.8  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.26   1.7e+02      56      75 ..      12      31 ..       8      36 .. 0.75
   2 ?    7.8   0.0    0.0035       2.3      38      99 ..      35      95 ..      31     103 .. 0.88
   3 ?    1.4   0.1      0.34   2.2e+02      68     101 ..      97     136 ..      88     155 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.26
    PF05099.8 56 ygldpeeakalielfeeaee 75
                  gl++ee ++++e+f+    
  MMETSP0890-20130614|15303_1 12 PGLSEEEIEEIREAFNLFDT 31
                 57888888888888887665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0035
    PF05099.8 38 gqvteeEiqairellrsrygldpeeakalielfeeaeeeaadleeftralkdafd.yeerlal 99
                 g+++++E +a ++ l   ++ ++++  ++i   ++  + ++d+eef + + ++++ +++r+++
  MMETSP0890-20130614|15303_1 35 GTIDPKELKAAMQSL--GFEAKNQTIYQMIGDIDRDNSGSIDFEEFLDMMTAKMSdKDTREDI 95
                 899************..9999999999***********************9999956666655 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.34
    PF05099.8  68 elfeeaeee......aadleeftralkdafdyeerlalle 101
                  ++f+   ++         l +++++l ++++++e+ + +e
  MMETSP0890-20130614|15303_1  97 KVFNLFDDDqtghitLRNLKRVAKELGETMSDAELMEMIE 136
                  4444444443333333345666666666666666665554 PP

>> PF09373.5  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.8   1.8e+03       1      12 [.      33      44 ..      33      45 .. 0.85
   2 ?    5.2   0.0      0.03        20       2      13 ..      70      81 ..      69      83 .. 0.93
   3 ?    0.9   0.0      0.71   4.6e+02       2      18 ..     107     123 ..     107     128 .. 0.82
   4 ?   -2.1   0.0       6.4   4.2e+03       6      17 ..     127     138 ..     123     138 .. 0.78
   5 ?   -0.6   0.0       2.1   1.4e+03       3      12 ..     144     153 ..     143     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2.8
    PF09373.5  1 gsgkisyeeyld 12
                 gsg+i + e+++
  MMETSP0890-20130614|15303_1 33 GSGTIDPKELKA 44
                 69*****99986 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.03
    PF09373.5  2 sgkisyeeyldm 13
                 sg+i +ee+ldm
  MMETSP0890-20130614|15303_1 70 SGSIDFEEFLDM 81
                 89*********9 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.71
    PF09373.5   2 sgkisyeeyldmasrvl 18 
                  +g i++++++++a++  
  MMETSP0890-20130614|15303_1 107 TGHITLRNLKRVAKELG 123
                  589**********9865 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 6.4
    PF09373.5   6 syeeyldmasrv 17 
                  s  e+ +m+ r+
  MMETSP0890-20130614|15303_1 127 SDAELMEMIERA 138
                  7789999*9985 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 2.1
    PF09373.5   3 gkisyeeyld 12 
                  g is++e+ +
  MMETSP0890-20130614|15303_1 144 GEISPDEFYA 153
                  78*****986 PP

>> PF09124.5  T4 recombination endonuclease VII, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.032        21      19      31 ..      40      52 ..      37      60 .. 0.87
   2 ?    4.6   0.1     0.034        22      32      46 ..      86     100 ..      75     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.032
    PF09124.5 19 eemiaelqsrGfe 31
                 +e +a +qs Gfe
  MMETSP0890-20130614|15303_1 40 KELKAAMQSLGFE 52
                 689*********8 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.034
    PF09124.5  32 YndkdtkaeLvkkfr 46 
                    dkdt++++ k+f+
  MMETSP0890-20130614|15303_1  86 MSDKDTREDIQKVFN 100
                  57***********97 PP

>> PF03963.9  Flagellar hook capping protein - N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00065      0.42      23      49 ..      57      90 ..      36      91 .. 0.75
   2 ?   -0.6   0.0         2   1.3e+03      23      43 ..     130     157 ..     110     158 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00065
    PF03963.9 23 a.......ssakssssldkddFLkLLvaqLqnQD 49
                 +        ++++s s+d ++FL +++a ++  D
  MMETSP0890-20130614|15303_1 57 TiyqmigdIDRDNSGSIDFEEFLDMMTAKMSDKD 90
                 144555557899999**************98766 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2
    PF03963.9  23 a.......ssakssssldkddFLkLLva 43 
                  +       +++++  +++ d+F  ++++
  MMETSP0890-20130614|15303_1 130 ElmemierADTDQDGEISPDEFYAIMTK 157
                  2444554467777778888899888886 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.16     1e+02      51      86 ..      27      62 ..       9      79 .. 0.74
   2 ?    8.0   0.2    0.0047         3      47      90 ..      96     139 ..      78     144 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.16
    PF13155.1 51 lalDnDeaGrkaaeklkkalkekgkenekvkvvrlp 86
                   +D D  G    ++lk+a+++ g+e++++ +++++
  MMETSP0890-20130614|15303_1 27 NLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI 62
                 579999999999999999999999666666665544 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0047
    PF13155.1  47 keivlalDnDeaGrkaaeklkkalkekgkenekvkvvrlpekkD 90 
                  +++   +D D+ G+ + ++lk+  ke g++ + ++  +++e+ D
  MMETSP0890-20130614|15303_1  96 QKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELMEMIERAD 139
                  569999**************988888885555555555555445 PP

>> PF08726.5  Ca2+ insensitive EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0032       2.1       6      68 ..      20      83 ..      16      84 .. 0.92
   2 ?    3.2   0.1      0.12        78       1      29 [.      88     117 ..      88     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0032
    PF08726.5  6 eqveeaFral.aegKpYvTeedLraallpeqaeyllerMpeysgpegdetegayDYesFleklf 68
                 e+++eaF     +g   +  ++L+aa+     e   +++ ++ g   + ++g+ D+e+Fl+ ++
  MMETSP0890-20130614|15303_1 20 EEIREAFNLFdTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDRDNSGSIDFEEFLDMMT 83
                 99********99999**************9999999******99999************98775 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.12
    PF08726.5   1 dtdsaeqveeaFralaegK.pYvTeedLra 29 
                  d d++e++ + F    ++    +T  +L++
  MMETSP0890-20130614|15303_1  88 DKDTREDIQKVFNLFDDDQtGHITLRNLKR 117
                  789**********99777758999988876 PP

>> PF11450.3  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       9.7   6.3e+03      33      42 ..      82      91 ..      77      93 .. 0.75
   2 ?   11.9   0.1   0.00026      0.17      19      52 ..     108     144 ..     104     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 9.7
    PF11450.3 33 maeSMsekeL 42
                 m   Ms+k+ 
  MMETSP0890-20130614|15303_1 82 MTAKMSDKDT 91
                 7778998875 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00026
    PF11450.3  19 GetkksdLkgasksmaeSMsekeLeel...AsTkrkg 52 
                  G     +Lk+ +k++ e+Ms+ eL e+   A T+++g
  MMETSP0890-20130614|15303_1 108 GHITLRNLKRVAKELGETMSDAELMEMierADTDQDG 144
                  7777889*******************96666777765 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   0.00048      0.31      14      65 ..      91     142 ..      74     148 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00048
                  -HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS-HHH CS
   PF03448.12  14 deeeraallrllpkeeaaevleelsedlqeeliealpdeelaelleeldsDd 65 
                  + e+ +++++l ++++ + +       +++el e+++d+el e++e  d+D+
  MMETSP0890-20130614|15303_1  91 TREDIQKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELMEMIERADTDQ 142
                  5688899*************99999**********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       922  (0.0674371); expected 273.4 (0.02)
Passed bias filter:                      743  (0.0543446); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        21  (0.00153599); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.65
# Mc/sec: 593.56
//
Query:       MMETSP0890-20130614|15311_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.68
# Mc/sec: 394.69
//
Query:       MMETSP0890-20130614|15313_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       132  (0.00965477); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 343.99
//
Query:       MMETSP0890-20130614|15312_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-06   26.4   0.0    8.5e-06   25.6   0.0    1.5  1  PF08774.6 VRR-NUC domain


Domain annotation for each model (and alignments):
>> PF08774.6  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   6.2e-10   8.5e-06      46      99 ..       3      90 ..       1      91 [. 0.83

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 6.2e-10
    PF08774.6 46 sGvPDlilwlpegkrp....................................ifllvEvKgpgdklsdkQrawldrlarsgvkvevcrva 99
                  G+PDl +++  ++ +                                     +++vEvK+  d+l+ +Q+ wl+ l+++ ++++v+rv+
  MMETSP0890-20130614|15312_1  3 NGFPDLTCLKAISQDKkeditktllpfssfkpaskskkvltekliipegtefHIRFVEVKA-TDHLQSNQTLWLNYLRSQ-IDAGVLRVK 90
                 699*****95555544556777788888888888888889999999999999********8.59**************99.*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 370.69
//
Query:       MMETSP0890-20130614|15310_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-43  146.6   1.3    4.8e-43  145.9   0.9    1.3  1  PF03947.13 Ribosomal Proteins L2, C-terminal domain
    7.6e-16   57.7   0.3    1.7e-15   56.5   0.2    1.6  1  PF00181.18 Ribosomal Proteins L2, RNA binding domain
  ------ inclusion threshold ------
      0.018   14.5   0.2      0.043   13.3   0.0    1.7  2  PF01052.15 Surface presentation of antigens (SPOA)


Domain annotation for each model (and alignments):
>> PF03947.13  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.9     1e-46   4.8e-43       3     128 ..      98     229 ..      96     231 .. 0.95

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 1e-46
                  ---BEEGGGS----EBBSB-S-------SS------BEB----S..SEEEEE-----EEEEETTSEEB-------STTS--------GGG---.....-S------S-TTT--------------.--SS--- CS
   PF03947.13   3 iGnalpLkniplGtvvhnielkpgkggklarsaGtvaqilakee..kyvlvkLpSgevklvskecrAtiGevsneekknkklgkAgrsrwlgk.....rptvRGvamnpvDhPhGGGegktsigrkspvspwg 128
                  +Gn+lpL+ ip+Gtvv+nie +pg++gk++r +G +a +++++e    + ++LpSg +k v+++cr++iG+v++ ++++k++ kAgr++++++     +p+vRGvamnpv+hPhGGG+ +++ig++s++++ +
  MMETSP0890-20130614|15310_1  98 VGNILPLHAIPEGTVVCNIEARPGDRGKMVRCSGDYAILVSHDEdkGTTKLRLPSGGKKTVKSRCRCMIGIVAGGGRTDKPMLKAGRAYHKYRvkrneWPKVRGVAMNPVEHPHGGGN-HQHIGHPSTTKRLA 229
                  7*****************************************99766899******************************************9999**********************.******88887765 PP

>> PF00181.18  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.2   3.8e-19   1.7e-15       1      77 []      11      90 ..      11      90 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 3.8e-19
   PF00181.18  1 GRnnkGritvrhrggghkrkyrlidfkrkkenikgkVvkieydpnRsapialvkyed..gekr.....yilapeglkvGdtivs 77
                 G+++ +++++r r+g   +k r++d+++k+++ikg++++i++ p+R ap+a++++++     +     +i a egl  G ++++
  MMETSP0890-20130614|15310_1 11 GKGTVFTSHTRLRKG--AVKLRKLDYAEKEGYIKGVIKQIIHEPGRGAPLAKIQFQNayR--YkrdneLIVAAEGLYEGMFVYC 90
                 89999**********..****************************************654..445899************9997 PP

>> PF01052.15  Surface presentation of antigens (SPOA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.67   3.1e+03      49      65 ..       5      21 ..       4      32 .. 0.72
   2 ?   13.3   0.0   9.4e-06     0.043      28      72 ..      95     139 ..      94     144 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.67
   PF01052.15 49 vngrpiarGelgeidgr 65
                 + g+++++G++ ++  r
  MMETSP0890-20130614|15310_1  5 IRGQRKGKGTVFTSHTR 21
                 67899999988777664 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 9.4e-06
   PF01052.15  28 nLkpGdvlpLdkpaedpvelyvngrpiarGelgeidgrlavrite 72 
                  +L +G +lpL+   e++v  +++ rp  rG+++++ g +a+ + +
  MMETSP0890-20130614|15310_1  95 ALVVGNILPLHAIPEGTVVCNIEARPGDRGKMVRCSGDYAILVSH 139
                  6889*************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 855.37
//
Query:       MMETSP0890-20130614|15308_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.95
# Mc/sec: 1152.77
//
Query:       MMETSP0890-20130614|15314_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-92  310.0  17.1    3.5e-92  308.8  11.8    1.5  1  PF00909.16 Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.8  11.8   2.6e-96   3.5e-92       2     399 .]     121     575 ..     120     575 .. 0.96

  Alignments for each domain:
  == domain 1    score: 308.8 bits;  conditional E-value: 2.6e-96
                  HHHHHHHHHHHH----TTT---------HHHHHHHHHHHHHHHHHHHHH---TTT---..........---------TT...-B----BHHHHHHH---HHHHH--------TTTB-HHHHHHHHHHHHHHTHHHHHHHH--.---TTT----.------TTHHHHHH----------------.....--S--GSBHHHHH---HHHH--------------SHHHHH.....HHHHHHHHHHHHH-------TTT--------------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--.............................................-----------..-HHHHHHHHHHHHHHH---TTT---HHHHHH---B-XHHHHHXXXHHHHXXXXSB CS
   PF00909.16   2 flllaaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgksk.......gvsgfignlglsaagvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfe..gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara....raavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv.............................................askisggllsgegkqlvvqligilvilayafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                  ++++a ++ +f q gf+lle+g +r+kn+ ni++knl+d++v+ l+y+ +G+sla g ++       +++ f+gn ++ + + +  + + + +++f ++faat +tivsgavaeri+f+ay+++s+ll+++vyp+++hw+w+ +g+l+   ++ DfAg+++VH+++gva++++a+  g+r g f+  gk + i+gh+ p+  lG ++ wfg+  FN+gs l++ + a+a    r++v T+l ++ g++t ll    +eg  ++   ++G+lAG++A+++ cavv++w+ ++i +  g+l+++g++++ +k ++dD+l + a+H  +Gi+G+lavg+fa+++ +                                              s+ +g++++g+gkql++q++++ + +++ ++    +++ +k +  Lr   e+e +glDv+ hg  ay
  MMETSP0890-20130614|15314_1 121 WVIVAGLICWFLQGGFGLLETGGCRAKNAKNIMLKNLMDACVGGLVYYWCGWSLAHGGETtnekgapDGNTFSGNGQFMLLSHRRIEAYGYHLWFFNYVFAATIATIVSGAVAERIQFKAYMIYSMLLTGIVYPITSHWIWSPDGFLYRAAIV-DFAGGGAVHALSGVAAFVGAVACGPRDGVFDenGKWKGINGHDKPLMALGLFVFWFGFIPFNSGSGLSLCGYASAnltaRIVVITTLGGCSGGVTGLLYGIATEGIASLELCISGVLAGMIAVCSCCAVVDVWAVFWIISPLGALAYYGTDVILRKCGVDDPLTASALHYSPGIVGMLAVGFFANPRFMsdvylngydtsrnrcadldgltevpdgdenvdgdyifykyrkndgCSDFYGVFFGGNGKQLGWQIAASGLYTVWGLIAVGAIFFPMKWIGILRTPLEDEREGLDVTHHGGVAY 575
                  777777788888********************************************9775322223357888888777777777777778889************************************************************.******************************999999**********************************999999999***********************************************************9999*********************************************99*************************************************************************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.64
# Mc/sec: 2272.79
//
Query:       MMETSP0890-20130614|15332_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-14   50.8   1.5    1.7e-07   30.7   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.031   12.3   1.0      0.053   11.5   0.7    1.5  1  PF11715.3  Nucleoporin Nup120/160
      0.062   12.8   0.2      0.095   12.2   0.1    1.4  1  PF08662.6  Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2     1e-07   0.00047      21      39 .]       1      19 [.       1      19 [. 0.94
   2 !   30.7   0.0   3.8e-11   1.7e-07      10      36 ..      31      57 ..      25      58 .] 0.95

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1e-07
                 SSSTEEEEEETTSEEEEEE CS
   PF00400.27 21 pdgpllasgSrDgtirlWd 39
                 +dg++++++S+D t r+W+
  MMETSP0890-20130614|15332_1  1 HDGKYILTSSWDMTARIWN 19
                 689***************7 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 3.8e-11
                 SSSSEEEEEEESSSTEEEEEETTSEEE CS
   PF00400.27 10 HtspVtcvafspdgpllasgSrDgtir 36
                 H++ V+++afs d +l++++++D+t+r
  MMETSP0890-20130614|15332_1 31 HEDMVNSCAFSFDDKLIVTACDDKTVR 57
                 99************************9 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   1.2e-05     0.053     232     270 ..       4      34 ..       1      58 [] 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
    PF11715.3 232 tfvftlsrDgkLRvWnletgqclrttdileaaellpads 270
                   +++t s D + R+Wn+++g++++t        l+ +d+
  MMETSP0890-20130614|15332_1   4 KYILTSSWDMTARIWNVTDGTHMKT--------LRHEDM 34 
                  689999****************443........333333 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.1e-05     0.095     128     162 ..      16      51 ..       1      57 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.1e-05
    PF08662.6 128 eiydvkklkkiakaeasnat.lvewspdgryvlTat 162
                   i++v + +++++ ++++ + ++ +s d+++++Ta 
  MMETSP0890-20130614|15332_1  16 RIWNVTDGTHMKTLRHEDMVnSCAFSFDDKLIVTAC 51 
                  69************99876537************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 210.59
//
Query:       MMETSP0890-20130614|15346_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   12.7   0.1      0.086   12.1   0.1    1.4  1  PF11154.3 Protein of unknown function (DUF2934)
       0.12   11.7   0.6       0.16   11.2   0.4    1.2  1  PF03943.8 TAP C-terminal domain


Domain annotation for each model (and alignments):
>> PF11154.3  Protein of unknown function (DUF2934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.3e-05     0.086      12      23 ..      32      43 ..      30      48 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
    PF11154.3 12 AYelWeeeGrPe 23
                 AY+ We++G+P 
  MMETSP0890-20130614|15346_1 32 AYQAWEDDGFPT 43
                 9**********6 PP

>> PF03943.8  TAP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   2.4e-05      0.16      22      37 ..      22      37 ..      12      39 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.4e-05
                 HHHTTT-CHHHHHHHC CS
    PF03943.8 22 lednnWdYerAaqaFt 37
                 l+ nnW+Y+ A qa +
  MMETSP0890-20130614|15346_1 22 LKVNNWNYDCAYQAWE 37
                 6679********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.78
# Mc/sec: 230.42
//
Query:       MMETSP0890-20130614|15334_1  [L=1007]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-59  198.5   5.4    9.4e-59  198.5   3.8    1.7  2  PF00916.15 Sulfate transporter family
    7.8e-26   89.4   2.9    7.8e-26   89.4   2.0    2.6  2  PF13792.1  Sulfate transporter N-terminal domain with GLY motif
    3.5e-22   77.8   0.0    7.1e-22   76.9   0.0    1.5  1  PF01740.16 STAS domain
     0.0053   16.1   0.0      0.014   14.7   0.0    1.7  1  PF01842.20 ACT domain


Domain annotation for each model (and alignments):
>> PF00916.15  Sulfate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   3.8   2.8e-62   9.4e-59       3     279 ..     212     492 ..     210     493 .. 0.89
   2 ?   -4.3   0.2       1.7     6e+03      21      32 ..     506     517 ..     501     536 .. 0.58

  Alignments for each domain:
  == domain 1    score: 198.5 bits;  conditional E-value: 2.8e-62
   PF00916.15   3 llRlgflveflsravisGfmaGaailillsQlkkllglknltrksglvsvlealf.dlvdtlanwetlviglsvliflliikllpkrlkklfvvsapaplvavivatlisllf...ladergvsivgeipsglpelslpk.lklspsllsdllpialalalvgllesiltaksfakikgykidsnkElvAlGiaNivsslfggypatgsfsrsavnvkaGakTqlsgivsavlvllvllvltplleyiPkavLaaiiivaviglidlselkklwklskldfl 279
                  l+Rlgfl++fl ++visGf+++aai+i+lsQ+k+ + ++  ++++  +s +  l+ +l++  a+   +v+gl+  + l  +++  ++++++     p   ++v    l+ +++   +   +gv++vg ip+glp++ +   l+  ++ +  +lp+al++ l+g++es ++a+++a+++g++++s++El A+G+aN+++s f gyp++gsfsrsav  ++Ga Tq+ +iv++++++l+ll++++++ ++P  vLa+++i  v++li ++e+k+lwk+++ df+
  MMETSP0890-20130614|15334_1 212 LFRLGFLINFLGHPVISGFTSAAAIIIGLSQVKSWMSVSV-PKSQYTHSTVGDLLgKLFRGEARGIPFVFGLLSWAALWGVRKAAIKYPRRCGFLKPLGPLIVCGCALVLIIItgdELRDYGVEVVGLIPRGLPKPTIGLvLHRLSDDIMRVLPTALSVSLIGFMESYAIASTLAAKHGQTLSSTRELRAVGLANLIGSAFAGYPVAGSFSRSAVSNATGALTQFGTIVTGIVLMLTLLIMPSFVRKLPRFVLASVVIASVVNLIAIDEAKRLWKVRRPDFF 492
                  8************************************995.6555555555554405555558899999*********9999999999987765555555555555555555559999999***************9998666677889999********************************************************************************************************************************98 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 1.7
   PF00916.15  21 fmaGaailills 32 
                   ++G+ai +++s
  MMETSP0890-20130614|15334_1 506 VLNGLAIAVIVS 517
                  444444444443 PP

>> PF13792.1  Sulfate transporter N-terminal domain with GLY motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   2.0   2.3e-29   7.8e-26       1      81 [.      75     154 ..      75     157 .. 0.97
   2 ?   -2.6   0.2       1.2     4e+03      55      78 ..     223     246 ..     215     251 .. 0.60

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 2.3e-29
    PF13792.1   1 lpilkwlpkyslksklkgDllAGltvalvliPqalayAllaglppiyGLyaaivplliyalfGssrqlvvGptaalsllva 81 
                  +p l+w+p+ s k+  k+D +AGltv++++iPq+++yA +a+lp +yGLyaa +++l+y ++G+s ql+vGp+a++sllv 
  MMETSP0890-20130614|15334_1  75 FPPLSWFPELS-KAVAKSDTVAGLTVGVMAIPQSMSYASIANLPLEYGLYAASFSALVYGFVGGSGQLAVGPVALVSLLVE 154
                  6899*******.8*****************************************************************986 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.2
    PF13792.1  55 plliyalfGssrqlvvGptaalsl 78 
                  +  +++ f s   +++G   + s 
  MMETSP0890-20130614|15334_1 223 GHPVISGFTSAAAIIIGLSQVKSW 246
                  555666666666666666665555 PP

>> PF01740.16  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   2.1e-25   7.1e-22       6     117 .]     554     686 ..     550     686 .. 0.96

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 2.1e-25
                  EETTEEEEEEE--BSHHHHHHHHHHHHHHHHHS-.............................--EEEEE----S-B-----------HHHHHT----EEEES--HHHHHHHHH---TTTS...EEESSHHHH CS
   PF01740.16   6 eiegililrldgpldfanaesfkekleravgeeperve.....................kkislrslildlsavsfiDssGvraLkeilkelkrrgvevvlvnlkpevreklektgffdeveketlfltvhdA 117
                    +g+l++r+ ++++fan++++ke l   +++  ++v                      +   +r+++++++ v  +Ds+++++L++++k+++rrgv+v++++++++v+++l+k+++f+ ++ e+++++v++A
  MMETSP0890-20130614|15334_1 554 FVDGVLVIRIGASMYFANVSYIKETLLALAKKFDKAVCihqfsngqttnackmapsqheSLGAVRYVVIEMTPVMTLDSTAIHMLEDLVKDFRRRGVQVCFASCTQRVEDTLRKADIFHHLGYEWFHSHVNSA 686
                  679****************************99877779*****************99999999*****************************************************************9987 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     4e-06     0.014       3      23 ..     922     942 ..     920     943 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4e-06
                  EEEEEESSTHHHHHHHHHHHH CS
   PF01842.20   3 levgvpDrPGlLaevfgaLad 23 
                  ++v++ DrPGlL +++++L++
  MMETSP0890-20130614|15334_1 922 VIVDCLDRPGLLRDITAILTQ 942
                  789****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.46u 0.37s 00:00:01.83 Elapsed: 00:00:01.33
# Mc/sec: 1814.38
//
Query:       MMETSP0890-20130614|15351_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.37s 00:00:00.65 Elapsed: 00:00:00.69
# Mc/sec: 201.43
//
Query:       MMETSP0890-20130614|15421_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-16   59.9   0.0    1.9e-16   59.8   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
    5.8e-07   29.0   0.0    6.6e-07   28.8   0.0    1.1  1  PF13855.1 Leucine rich repeat
  ------ inclusion threshold ------
       0.59   10.2   2.4        8.8    6.5   0.1    2.5  2  PF05593.9 RHS Repeat
       0.93    9.4   7.6         18    5.3   0.1    3.1  2  PF05345.7 Putative Ig domain


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   5.5e-20   1.9e-16      13      71 ..       2      60 ..       1      61 [] 0.85

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 5.5e-20
    PF13306.1 13 nltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipsslts 71
                 +lt++t+p  +t+I + +F +c+sl+++tlp  l +ig++aF +c+slt+it+p  lt+
  MMETSP0890-20130614|15421_1  2 SLTQVTLPAGLTKIASGTFDGCTSLTQLTLPAGLITIGNSAFRGCTSLTQITLPAGLTT 60
                 68899999999999999999999999999999999999999999999999999988775 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.9e-10   6.6e-07       2      56 ..       2      54 ..       1      56 [. 0.93

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.9e-10
    PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 +L+ + L    l++i+ g+F g+++L+ L L    l++i   af g++sL+++ L
  MMETSP0890-20130614|15421_1  2 SLTQVTLPAG-LTKIASGTFDGCTSLTQLTLP-AGLITIGNSAFRGCTSLTQITL 54
                 6788888899.*********************.999****************988 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0026       8.8       7      37 ..       3      35 ..       3      36 .. 0.83
   2 ?    3.1   0.2     0.029        99       7      18 ..      49      60 ..      47      61 .] 0.67

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0026
    PF05593.9  7 LtevtdatGrvt....tYtYDaaGrlTaltdpdGt 37
                 Lt+vt + G +     t   D+   lT+lt p+G 
  MMETSP0890-20130614|15421_1  3 LTQVTLPAGLTKiasgT--FDGCTSLTQLTLPAGL 35
                 78999999998887544..9999999999999985 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.029
    PF05593.9  7 LtevtdatGrvt 18
                 Lt++t + G +t
  MMETSP0890-20130614|15421_1 49 LTQITLPAGLTT 60
                 566666666665 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0053        18       8      17 ..       4      13 ..       2      22 .. 0.82
   2 ?    3.9   2.1     0.014        48       6      17 ..      48      59 ..      19      59 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0053
    PF05345.7  8 gsngLPsGLt 17
                 ++ +LP+GLt
  MMETSP0890-20130614|15421_1  4 TQVTLPAGLT 13
                 5779*****9 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.014
    PF05345.7  6 tpgsngLPsGLt 17
                   ++ +LP+GLt
  MMETSP0890-20130614|15421_1 48 SLTQITLPAGLT 59
                 447889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       134  (0.00980105); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 211.85
//
Query:       MMETSP0890-20130614|15479_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.5e-131  436.0   0.0   7.4e-131  435.8   0.0    1.0  1  PF01053.15 Cys/Met metabolism PLP-dependent enzyme
      2e-08   33.5   0.0    4.1e-08   32.5   0.0    1.4  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
    2.7e-08   32.8   0.0    4.2e-08   32.2   0.0    1.2  1  PF00266.14 Aminotransferase class-V
    8.9e-07   28.0   0.0    1.4e-06   27.3   0.0    1.2  1  PF00155.16 Aminotransferase class I and II
    5.8e-05   22.2   0.2    0.00011   21.3   0.1    1.4  1  PF01212.16 Beta-eliminating lyase
     0.0014   17.2   0.0     0.0023   16.5   0.0    1.3  1  PF02347.11 Glycine cleavage system P-protein


Domain annotation for each model (and alignments):
>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.8   0.0  3.2e-134  7.4e-131       2     386 .]      24     399 ..      23     399 .. 0.96

  Alignments for each domain:
  == domain 1    score: 435.8 bits;  conditional E-value: 3.2e-134
                  HHHHH----GGGCTT-BSS--B---SBB-BCSCCHHCCCTTCE---SBTTT--HHHHHHHHHHHHHCT-SEEE-B----HHHHHHHHCCS----EEEEESS----HHHHHHCCHHH---EEEEEST...TCHHHHHHHTTTTEEEEEEESSBTTTTB---HHHHHHHHHHCSS-EEEEE-TTTHHHH--GGG----EEE--TTTTT----S-----EEESE-HHHHHHHHHHHHH---B--HHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSSGG..EEEEEESS-HHHHHHHHHH-SSSEESS-----S-EEE-CCCTTTTTSHHHHHHH----TTEEEEE-----HHHHHHHHHHHHH CS
   PF01053.15   2 tlavhagqekdeaqtgavvvpiyatstykfksveeaalfageekgyeYsRsgnPtrevleeriaaLeggeaalavsSGmaAiaaallallkaGdevvatddlYggtqrllekvlkklgvevkfvdt...sdleelekaikpntklvylEtptnpllkvvDieaiaklakkkgdvlvvvDntfaspllqrpLelgaDivvhSaTKylnGhsdvvgGvvvvkgkeelakklkflqnalGavlspfdawlllrGlkTLslRverhsenAlklAefLekhpkvekvyYpgLeshpqhelakkqlkgfggvlsfelkseeeaakkfldklklfslaeslGgvesLishpatmthasipkeereaagvtddLvRlsvGiEdvdDliadleqale 386
                  t +v++    + + +ga ++piy+t+t+++        +a+e   y+Y+RsgnPtr++le++ia+ eg +++la+s+GmaA+ aa+++l+kaGde++++dd Yggt+rll+kv+ k+g+++k+v +   + +++le+a+++ntklv +E+ptnp+++v+D++a++k++kk+g +l+ vDnt++spll++pL+lgaDivvhSaTK+++Ghsd++ Gvv+v++ ++l + l+f qn+ G  l p d++l lrGlkT++lRv+++++nA ++A+fL +hpkv+kv Y++ ++hp+h+++  q+ g+g v+ f++++ +  +k++++++klf +++s+G+v+sLis+p+ m+hasip+e r+++++ +d++R++vG+E+ dDliadl++ale
  MMETSP0890-20130614|15479_1  24 TRLVQSYAPLK-DPYGAANMPIYQTATFAQA-------SADEFGDYDYTRSGNPTRTALENAIADAEGCARCLAFSTGMAAL-AAVTRLCKAGDEILLSDDSYGGTYRLLAKVCGKMGINTKYVAMdghDGPARLEAAMSKNTKLVMVESPTNPMQRVCDLRALSKVCKKQG-ALLEVDNTLMSPLLSKPLTLGADIVVHSATKFIAGHSDTMCGVVCVND-PKLGDALYFSQNSEGTGLAPLDCFLALRGLKTMALRVYKAQSNAEQIAHFLTEHPKVTKVFYAARPDHPDHDIHATQAIGGGCVVCFTTGNVA-FSKHIVSTTKLFHITVSFGSVHSLISCPCDMSHASIPAEVRASRDFPEDIIRVCVGVEHCDDLIADLKRALE 399
                  56666666655.589****************.......8888888*************************************.*****************************************9855556899*************************************8.************************************************.******************************************************************************************995.69********************************************************************96 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.8e-11   4.1e-08      16     143 ..      60     189 ..      46     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.8e-11
   PF01041.12  16 ksgwltttgkeveeFEkafaeylgvkhavavssGtaAlllaLralgigpGdeVIvpsltfvAtanavl....qlGakpvfvDvdpetlnldpaaieaaitprtkaIl...pVhlyGqpadmdairaiaaehglkv 143
                  + + +++++++  ++E+a+a+  g + ++a+s+G aAl ++ r ++  +Gde+++   ++ +t+  +     ++G +  +v +d  +    pa++eaa +++tk ++   p + + +++d+ a+ ++++++g  +
  MMETSP0890-20130614|15479_1  60 DYDYTRSGNPTRTALENAIADAEGCARCLAFSTGMAALAAVTRLCK--AGDEILLSDDSYGGTYRLLAkvcgKMGINTKYVAMDGHD---GPARLEAAMSKNTKLVMvesPTNPMQRVCDLRALSKVCKKQGALL 189
                  5555667788999*********************************..78*************877661111568899999999665...5****************66669999****************9876 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.8e-11   4.2e-08      78     204 ..      97     220 ..      83     239 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.8e-11
                  HHH---------EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH--TTEEEEEEESB-S----B--HHHHHHHHHH---EEEEE---STTTS---HHHHT-SEEE-------- CS
   PF00266.14  78 alslarslkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldeleklltpktklvaithvsnvtGvvqpveeiaklakeagalvvvDaaqavghipidvkklgvDflafSgHKllg 204
                  + ++ r  kagdeil+++  + ++    ++++ + g + k++ +  +g+  ++ le++++++tklv++    n +  v ++ ++ k +k++gal+ vD   + +     +  lg+D+++ S+ K+++
  MMETSP0890-20130614|15479_1  97 LAAVTRLCKAGDEILLSDDSYGGTYRLLAKVCGKMGINTKYVAM--DGHDGPARLEAAMSKNTKLVMVESPTNPMQRVCDLRALSKVCKKQGALLEVDNTLMSPLLSKPL-TLGADIVVHSATKFIA 220
                  22333449************************9*9999999999..7888899*********************************************988777766555.6999999999999765 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.2e-10   1.4e-06      38     188 ..      64     193 ..      37     197 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 6.2e-10
                  B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---E.EEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEE CS
   PF00155.16  38 neygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDe 188
                  +++g+++   +le+a+a+  g          + + +++G  al+++ ++l+k  +gdeil++d +y+   + l    g+  +  + y + d h     le+a ++       tk+v vesp NP   v++l  l k+   +kk+++ll vD 
  MMETSP0890-20130614|15479_1  64 TRSGNPT-RTALENAIADAEG--------CARCLAFSTGMAALAAV-TRLCK--AGDEILLSDDSYGGTYRLLAKVCGKmGINTK-YVAMDGHDGPARLEAAMSK------NTKLVMVESPTNPMQRVCDLRALSKV---CKKQGALLEVDN 193
                  5666666.7889999999999........55458888888766655.55555..9********9998766655444444244444.3347778888889999998......88************************...********9996 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   4.9e-08   0.00011      13     218 ..      51     243 ..      45     305 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.9e-08
                  HHHHT.....TT......HHHHHHHHHHHHH------EE-----HHHHHHHHHHHHHT-EEEEETT-HHHHSS---HHHHH--EEEEE--TT.S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE-E-HHHHHHHHT--HHHHHTT-SEEEE-S---------...-EEE--HHHHHHHHHH CS
   PF01212.16  13 daqaaanlGdeaY..gedktvarledavaellgkeaalfvpsGtaAnqialsallqreeevvvtepshihfdetgaikelggvklrtlknkeagkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlDgARlaeaakslgeiakeiasyaDsvtislkKdlganvG...gilafrdkflaeaveq 218
                  ++ +a + Gd  Y   +++t  +le+a+a+  g+   l + +G aA   a++ l++ ++e++++++s++ ++   a k  g +   t + + +g   +++lea++ +      n++l++++ ++n     + ++  lr++++++k++g  l +D       +  ++   k ++ +aD+v+ s++K +    +   g+++++d  l  a  +
  MMETSP0890-20130614|15479_1  51 AQASADEFGDYDYtrSGNPTRTALENAIADAEGCARCLAFSTGMAAL-AAVTRLCKAGDEILLSDDSYGGTYRLLA-KVCGKMGINTKYVAMDGHDGPARLEAAMSK------NTKLVMVESPTNP----MQRVCDLRALSKVCKKQGALLEVDN------TLMSPLLSKPLTLGADIVVHSATKFIAGHSDtmcGVVCVNDPKLGDALYF 243
                  344667789987722467999**********************7775.89999****************9999988.577888888888888899999****99999......799*********4....8899***************999884......44455555666666666666666633332222236666666655555544 PP

>> PF02347.11  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     1e-06    0.0023     155     259 ..     108     218 ..      85     223 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1e-06
   PF02347.11 155 kkfvvdkkvhpqtlevlktrakgleieivvvdlkeekvsd......ekdvagvlvqyp.nteGeiedlkelieeahkakvlvvvaadllaLtilkpPgelgaDivvGsaqrf 259
                  ++++++ + +  t ++l     +++i++  v +  ++         +k++  v+v+ p n   ++ dl++l++ ++k+++l+ v   l++  +l  P  lgaDivv sa +f
  MMETSP0890-20130614|15479_1 108 DEILLSDDSYGGTYRLLAKVCGKMGINTKYVAMDGHDGPArleaamSKNTKLVMVESPtNPMQRVCDLRALSKVCKKQGALLEVDNTLMS-PLLSKPLTLGADIVVHSATKF 218
                  667777777777777777777777666665554433332245566678999999*999445789*****************999877776.799***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:00.67
# Mc/sec: 1441.39
//
Query:       MMETSP0890-20130614|15490_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 168.49
//
Query:       MMETSP0890-20130614|15531_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   12.9   0.0       0.14   11.8   0.0    1.6  1  PF12937.2 F-box-like


Domain annotation for each model (and alignments):
>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-06      0.14       5      29 ..     324     348 ..     320     351 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.9e-06
                  -HHHHHHHHTTS-HHHHHHH----H CS
    PF12937.2   5 PdEiLlqIFsyLppsdLlrlalVCr 29 
                  P+E+Ll I   L++++L r  + Cr
  MMETSP0890-20130614|15531_1 324 PPEVLLAIVATLNARELGRFECCCR 348
                  ************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.72
# Mc/sec: 1544.32
//
Query:       MMETSP0890-20130614|15553_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-53  178.1   0.0    1.1e-52  177.7   0.0    1.1  1  PF00406.17 Adenylate kinase
    2.3e-07   30.2   0.1    9.5e-06   25.0   0.0    2.6  2  PF05191.9  Adenylate kinase, active site lid
    5.5e-06   27.0   0.0    1.1e-05   26.0   0.0    1.6  1  PF13207.1  AAA domain
    1.2e-05   25.1   0.0    2.1e-05   24.3   0.0    1.4  1  PF13671.1  AAA domain
    0.00042   19.3   0.0     0.0016   17.5   0.0    1.9  1  PF06414.7  Zeta toxin
     0.0032   17.6   0.0     0.0086   16.2   0.0    1.7  1  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.038   14.0   0.1      0.086   12.9   0.1    1.6  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.045   13.7   0.1      0.075   13.0   0.0    1.5  1  PF13401.1  AAA domain
      0.056   12.1   0.0       0.08   11.5   0.0    1.2  1  PF03215.10 Rad17 cell cycle checkpoint protein
      0.084   12.4   0.1        2.8    7.5   0.0    2.3  2  PF13190.1  PDGLE domain
       0.14   10.8   0.0       0.24   10.0   0.0    1.3  1  PF00931.17 NB-ARC domain


Domain annotation for each model (and alignments):
>> PF00406.17  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   8.9e-56   1.1e-52       1     148 [.      42     235 ..      42     238 .. 0.99

  Alignments for each domain:
  == domain 1    score: 177.7 bits;  conditional E-value: 8.9e-56
                  EE--TT-----HHHHHHHHCS-EEEE---HHHHHHHCT-----HHHHHHHTT----HHHHHHHHHHHHHSHCGH-EEEEE----SHHHHHHHHHHHHCTT-EESEEEEEE--HHHHHHHHHH..............................................GSHHHHHHHHHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00406.17   1 llGaPgaGKGtqaeklvkkyglvhlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkerleqkdkkkgflldgfPRtveqaealeelleeekvkldlvleldvpeevlveRllk..............................................DneetvkkRletykkqtepvidyykk 148
                  l G+Pg+GKGt a+++v+ +g+++lstGd+lRa+v++gte+Gk+a ++m+ g lvpde+vv+++k+r++++d++kgflldgfPRt+eqa++l++ l +++ ++++vl l+vp+e+l  R+++                                              D++e++++Rl+ y+++t+p++dyy  
  MMETSP0890-20130614|15553_1  42 LFGPPGSGKGTCAPTIVNGLGIPQLSTGDILRAAVAAGTEVGKKADAIMKSGGLVPDEIVVQIIKDRIRETDCTKGFLLDGFPRTLEQAKQLDAALITTGENVSMVLALQVPDEALEARITGrwvhkasgrsyhvvnkkpkslpegaepsaenmfddetgeslmqrkdDTKEALASRLKSYHDMTSPLLDYYAA 235
                  68**********************************************************************************************************************************************************************************************75 PP

>> PF05191.9  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.6e-09   9.5e-06       1      36 []     164     209 ..     164     209 .. 0.85
   2 ?   -3.1   0.0       4.6   5.7e+03      10      17 ..     221     228 ..     220     230 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 7.6e-09
                  -EEES----EEB..........TTTB--S-----S-----EE--TT CS
    PF05191.9   1 RrvCpdCGrvYh..........ikfnpPkvdgvCDkCgepLiqRkD 36 
                  R+v++++Gr+Yh              p+ ++  +D++ge L qRkD
  MMETSP0890-20130614|15553_1 164 RWVHKASGRSYHvvnkkpkslpEGAEPSAENMFDDETGESLMQRKD 209
                  9***********77777666665566688999*************9 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.6
                  EEBTTTB- CS
    PF05191.9  10 vYhikfnp 17 
                  +Yh+ + p
  MMETSP0890-20130614|15553_1 221 SYHDMTSP 228
                  7**98776 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   8.9e-09   1.1e-05       1     110 [.      39     159 ..      39     207 .. 0.67

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 8.9e-09
                  EE--B--TT---HHHHHHHHHHSTEEEEEGGGB-..-GGGS-B-----B.....--.SSGGGB-HHHHHHHH.....H..HHHHHH.......TTS-----------EEEEE----TTGGTTT-SS CS
    PF13207.1   1 viaitGppGsGKsTlakeLaerlglpvlslddll..reeglkelddger.....es.kdadadllaaildglaa.kkdtlswvidg.......aleseldlrleeadeiiyldaplpecrkrllkr 110
                  +i+++GppGsGK T a  + + lg+p ls++d+l       ++++ g       +s     ++++ +i+++  + ++ t+++++dg       a    ld+ l + +e ++++++l  ++++ l+ 
  MMETSP0890-20130614|15553_1  39 IIVLFGPPGSGKGTCAPTIVNGLGIPQLSTGDILraA--VAAGTEVGKKadaimKSgGLVPDEIVVQIIKDRIReTDCTKGFLLDGfprtleqA--KQLDAALITTGENVSMVLALQ-VPDEALEA 159
                  799*****************************54342..333444222221223224444445555555555456788888****976643210..222333334447777777776.44444443 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.7e-08   2.1e-05       1     121 [.      39     167 ..      39     179 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.7e-08
    PF13671.1   1 lvllvGlpGsGKstlaerllkklgyvrlsq.dtlrkrlfg.tdqqsktd....ytr.vlkr.lyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvri.vylevpeetlreRlakRern 121
                  +++l G+pGsGK t a  +++ lg+  ls+ d+lr ++++ t+  +k+d    +   v ++ + qi+++++r++    + +++d   ++ e+ +++++++   g +v++ + l+vp+e l++R+  R  +
  MMETSP0890-20130614|15553_1  39 IIVLFGPPGSGKGTCAPTIVNGLGIPQLSTgDILRAAVAAgTEVGKKADaimkSGGlVPDEiVVQIIKDRIRET-DCTKGFLLDGFPRTLEQAKQLDAALITTGENVSMvLALQVPDEALEARITGRWVH 167
                  5899********************66666515566666667444444431111322222223566666666543.445889***777777**************99987468************999665 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0016       6     146 ..      26     168 ..      21     183 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.3e-06
    PF06414.7   6 snkk.vpeqekpkavllgGqpGAGKtslaellleelaagnivrid.aDelrkyhpayrelekkdpkeaseltqkdaselveklidralek..gyniilegtlrspdkarkiarklkkagykvevv.ivavpkelSelgilqRyeee 146
                   + + + +++k+++++l G+pG+GK++ a  + + l   +i +++ +D lr   +a +e+ kk ++ + +       ++v+ + dr+ e    + ++l+g  r+ + a+++  +l   g +v +v ++ vp e  e +i  R+  +
  MMETSP0890-20130614|15553_1  26 ADYSsMNKEKKRTIIVLFGPPGSGKGTCAPTIVNGL---GIPQLStGDILRAAVAAGTEVGKKADAIMKSGGLVPDEIVVQIIKDRIRETdcTKGFLLDGFPRTLEQAKQLDAALITTGENVSMVlALQVPDEALEARITGRWVHK 168
                  555557788***********************9988...44444326777777777777666544444433222222222222223322211356777777777777777777777777777544145555555566666666655 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.9e-06    0.0086       1     112 [.      40     164 ..      40     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.9e-06
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl.......gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlkl..........vvLradpeelarRlekR 112
                  I++ G+pG+GK T a  + + l       gd+lr  +     +    d i++    + de +++++ d + e +      +  ++dg+++ le  ++ d+ l            L++++e l  R+  R
  MMETSP0890-20130614|15553_1  40 IVLFGPPGSGKGTCAPTIVNGLgipqlstGDILRAAVAAGTEVGKKADAIMKSGGLVPDEIVVQIIKDRIRETDC----TKGFLLDGFPRTLEQAKQLDAALittgenvsmvLALQVPDEALEARITGR 164
                  89****************999999999*9*****99999999999999988888888888888888888888765....7888******************9***********************9987 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.9e-05     0.086       1      26 [.      40      65 ..      40     102 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.9e-05
                 EEEE-------HHHHHHHHHHCTHEE CS
   PF00004.24  1 vllyGppGtGKTllakavakelgvef 26
                 ++l+GppG GK ++a  +++ lg++ 
  MMETSP0890-20130614|15553_1 40 IVLFGPPGSGKGTCAPTIVNGLGIPQ 65
                 579*****************998764 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     6e-05     0.075       3      28 ..      36      61 ..      32     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6e-05
    PF13401.1  3 sagilvvtGesGvGKTtllrrlarql 28
                 +++i+v++G++G+GK t++  +++ l
  MMETSP0890-20130614|15553_1 36 KRTIIVLFGPPGSGKGTCAPTIVNGL 61
                 789************99998888766 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.4e-05      0.08      26      63 ..      16      55 ..       6      73 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.4e-05
   PF03215.10 26 kKikeveewlkadfles.akkr.illltGPsGcgKsTtvk 63
                   +++  ++l   ++ + +kkr i+ l GP+G+gK T   
  MMETSP0890-20130614|15553_1 16 AEVSKYRKALADYSSMNkEKKRtIIVLFGPPGSGKGTCAP 55
                 55566666776655544045558*************9765 PP

>> PF13190.1  PDGLE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.076        94      36      63 ..       9      41 ..       4      82 .. 0.64
   2 ?    7.5   0.0    0.0022       2.8      18      56 ..     184     233 ..     167     241 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.076
    PF13190.1 36 eaasgglhhaladtaiLpDYsf.kglek....v 63
                 e  + +  ++ +    L+DYs  ++++k    v
  MMETSP0890-20130614|15553_1  9 ETLEAAKAEVSKYRKALADYSSmNKEKKrtiiV 41
                 4444433344444789****9977766655550 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0022
    PF13190.1  18 npDGlEwsiekv....agaeeleaasgglhhalad........taiLpDYs 56 
                   p+G E s+e++    +  e+l + + ++++ala+        t++L DY 
  MMETSP0890-20130614|15553_1 184 LPEGAEPSAENMfddeT-GESLMQRKDDTKEALASrlksyhdmTSPLLDYY 233
                  699********999963.3333333445566666666669999*******5 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00019      0.24      14      41 ..      32      59 ..      18      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
                 TTTSSSEEEEEE-------HHHHHHHTS CS
   PF00931.17 14 eeeeelkvvglvGmgGvGKttlakqvyk 41
                 ++e++++++ l G +G+GK t a  +++
  MMETSP0890-20130614|15553_1 32 NKEKKRTIIVLFGPPGSGKGTCAPTIVN 59
                 335999*****************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.64
# Mc/sec: 981.01
//
Query:       MMETSP0890-20130614|15599_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   13.6   1.4      0.063   13.0   1.0    1.4  1  PF05377.6  Flagella accessory protein C (FlaC)
       0.22   10.7   4.1       0.32   10.2   2.8    1.3  1  PF01121.15 Dephospho-CoA kinase
       0.39   10.4  12.8        0.6    9.8   8.9    1.3  1  PF12718.2  Tropomyosin like
       0.42    9.9   3.1       0.45    9.9   2.1    1.1  1  PF04063.9  Domain of unknown function (DUF383)
       0.56   10.3   4.4       0.67   10.0   3.1    1.2  1  PF01519.11 Protein of unknown function DUF16
       0.69    9.0   4.1       0.77    8.9   2.9    1.1  1  PF10127.4  Predicted nucleotidyltransferase
        4.1    7.5  10.5       0.62   10.2   2.8    1.9  2  PF01890.11 Cobalamin synthesis G C-terminus
        5.5    6.7  10.8       0.77    9.5   0.6    2.7  3  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   3.7e-05     0.063       6      51 ..      13      58 ..       8      62 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.7e-05
    PF05377.6  6 EnklsklstvvatvrkeleelsksvekikenvkdvlkLYEvVsnei 51
                 E ++ +l ++ +t++k+++el  + e+ +e+vkd l+  E +  ++
  MMETSP0890-20130614|15599_1 13 EAQVQELIVANTTAEKQIQELVVAKERAEEQVKDALAANEAIQAQV 58
                 78888999999***********************998877776665 PP

>> PF01121.15  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.8   0.00019      0.32     117     167 ..      24      74 ..       3      78 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
                  TTGGGG-SCEEEEE--HHHHHHHHHHCHTSTHHHHHHHHHHS--HHHHHHH CS
   PF01121.15 117 sqlekliervlvvdvdlelqveRlverdglseeevkaiiaaQaseeerlal 167
                  +  ek i++ +v +   e+qv+  ++ ++  +++v+a  +a +s e+r   
  MMETSP0890-20130614|15599_1  24 TTAEKQIQELVVAKERAEEQVKDALAANEAIQAQVQALTSAKVSAENRALE 74 
                  356778888888889999999999999999999999999999999998765 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.9   0.00035       0.6      11      80 ..       4      78 ..       2      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00035
    PF12718.2 11 naqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae.....altr 80
                 +a++k e++e++++el   n+++E++i++L   ++ +Ee+v  + ++ +  ++++++ +++k +ae     al +
  MMETSP0890-20130614|15599_1  4 EALAKKEAAEAQVQELIVANTTAEKQIQELVVAKERAEEQVKDALAANEAIQAQVQALTSAKVSAEnraleALAK 78
                 6899*************************************9988888888888888877777777554445555 PP

>> PF04063.9  Domain of unknown function (DUF383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00026      0.45       3      66 ..       5      65 ..       3      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00026
    PF04063.9  3 yiadpkslladllcmllsNltksesivailldlkrearaeqakkvkeskeaiarLldafvkGad 66
                  +a+++   a+   ++++N t +++i++ ++  +r+  +eq k+    +eai++ ++a++  a+
  MMETSP0890-20130614|15599_1  5 ALAKKEAAEAQVQELIVANTTAEKQIQELVVAKERA--EEQVKDALAANEAIQAQVQALTS-AK 65
                 567788888889999*************66666666..89999999999999999999988.33 PP

>> PF01519.11  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.1   0.00039      0.67      50      91 ..      11      62 ..       2      79 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00039
   PF01519.11 50 aqgeqikkltetvekqgeqikelqveqk..........aqgetlqlilktle 91
                 a + q+++l+   +  ++qi+el v+ +          a +e +q ++++l+
  MMETSP0890-20130614|15599_1 11 AAEAQVQELIVANTTAEKQIQELVVAKEraeeqvkdalAANEAIQAQVQALT 62
                 4566777776666667777777777777444444444444444444444444 PP

>> PF10127.4  Predicted nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.9   0.00045      0.77     179     237 ..      17      72 ..       2      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00045
    PF10127.4 179 laelv.dasllaeieeLlaikrggeekeeiarvpeldafiereleeakeksklpeeakpd 237
                   + +v +++ +++i+eL+ +k+++ee+ +  ++ + ++ i+++++++ ++  + e+  ++
  MMETSP0890-20130614|15599_1  17 QELIVaNTTAEKQIQELVVAKERAEEQVK--DALAANEAIQAQVQALTSAKVSAEN--RA 72 
                  3445568999***********99997666..6999999999999888877777666..34 PP

>> PF01890.11  Cobalamin synthesis G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.5      0.16   2.7e+02      24      53 ..       5      33 ..       2      39 .. 0.51
   2 ?   10.2   2.8   0.00036      0.62      13      56 ..      36      79 ..      34      83 .] 0.93

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.16
   PF01890.11 24 alaeaglaleavaaiatidlKadepgllel 53
                 ala+++ a+++v+++  +++ a e+ ++el
  MMETSP0890-20130614|15599_1  5 ALAKKEAAEAQVQELIVANTTA-EKQIQEL 33
                 5555566666666655554444.3334433 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00036
   PF01890.11 13 saeeieaaieealaeaglaleavaaiatidlKadepgllelaee 56
                  +e+ e+ +++ala+++  +++v+a+ ++++ a++ +l +la++
  MMETSP0890-20130614|15599_1 36 AKERAEEQVKDALAANEAIQAQVQALTSAKVSAENRALEALAKK 79
                 578899************************************97 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.9     0.053        91      25      51 ..       7      33 ..       5      34 .. 0.88
   2 ?    9.5   0.6   0.00045      0.77      28      52 ..      38      62 ..      35      64 .. 0.90
   3 ?   -1.0   0.0      0.82   1.4e+03      37      45 ..      66      74 ..      62      81 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.053
   PF07716.10 25 akeeeleervkeLeeeNaqLrqkveqL 51
                 ak+e  e +v+eL   N + ++++++L
  MMETSP0890-20130614|15599_1  7 AKKEAAEAQVQELIVANTTAEKQIQEL 33
                 789999999****99999999999987 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00045
   PF07716.10 28 eeleervkeLeeeNaqLrqkveqLe 52
                 e  ee+vk+  + N++++++v++L+
  MMETSP0890-20130614|15599_1 38 ERAEEQVKDALAANEAIQAQVQALT 62
                 6679*******************97 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.82
   PF07716.10 37 LeeeNaqLr 45
                 +++eN +L+
  MMETSP0890-20130614|15599_1 66 VSAENRALE 74
                 567777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1498  (0.109567); expected 273.4 (0.02)
Passed bias filter:                      653  (0.0477618); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.46s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 280.14
//
Query:       MMETSP0890-20130614|15652_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-17   62.0   6.6    3.5e-17   61.7   2.1    2.9  3  PF05739.14 SNARE domain
    1.6e-06   28.0   0.4    1.6e-06   28.0   0.3    2.8  2  PF00804.20 Syntaxin
     0.0075   15.7   1.8     0.0075   15.7   1.3    2.4  2  PF00015.16 Methyl-accepting chemotaxis protein (MCP) signalling domain
  ------ inclusion threshold ------
      0.029   14.3   0.0        0.1   12.5   0.0    1.9  1  PF01655.13 Ribosomal protein L32


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.22   7.5e+02       4      17 ..      93     106 ..      86     110 .. 0.58
   2 ?   -2.4   0.0         1   3.5e+03      29      45 ..     186     202 ..     185     205 .. 0.74
   3 !   61.7   2.1     1e-20   3.5e-17       1      63 []     244     306 ..     244     306 .. 0.99

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.22
                  HHHHHHHCCHHHHH CS
   PF05739.14   4 eeleelessigeLk 17 
                   +++++e+ +++L 
  MMETSP0890-20130614|15652_1  93 SDIGKIEKAMRDLQ 106
                  34555555555554 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
                  HHHHHHHHHHHHHHHHH CS
   PF05739.14  29 eQgelldrIdnnvesas 45 
                  +Qge l r++ + e a+
  MMETSP0890-20130614|15652_1 186 SQGEYLSRLKRQKEGAN 202
                  79999999887766665 PP

  == domain 3    score: 61.7 bits;  conditional E-value: 1e-20
                  HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   PF05739.14   1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalryqk 63 
                  erdee++++ +si+eL  +f++++++v +Qg++ldrId n+e++ ++++++  ++ ka++yqk
  MMETSP0890-20130614|15652_1 244 ERDEEIRKIAESIQELSTIFKELAVLVIDQGTILDRIDFNMEQVAEHTRKGVIEIEKAEQYQK 306
                  8************************************************************98 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3   4.8e-10   1.6e-06       4      96 ..      83     173 ..      80     179 .. 0.91
   2 ?    1.3   1.5     0.098   3.3e+02      52      70 ..     243     261 ..     175     307 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.8e-10
   PF00804.20   4 effeqveeIrgeiekisekveelkrlhsrilaspdpd...kqtkeeleeltaeikklankirskLksleqsieqeegqnrssadlrirktqhstls 96 
                   +++ v++++++i ki++ +++l+  h + l+  ++d    ++ +e+e  t e ++l+++++s+Lk++  +     g++ s+++  ir + ++ ++
  MMETSP0890-20130614|15652_1  83 IWVDLVDSVESDIGKIEKAMRDLQAVHTKRLMVSFDDaneAAMDQEIEGKTREATRLFRSCESSLKRIALT-----GNDLSDSERTIRANIQRGMA 173
                  68999**********************99999888667779******************************.....99999999999999887766 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.098
   PF00804.20  52 aeikklankirskLksleq 70 
                   e    ++ki  ++++l++
  MMETSP0890-20130614|15652_1 243 VERDEEIRKIAESIQELST 261
                  4444444444444444433 PP

>> PF00015.16  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.031   1.1e+02     161     197 ..     113     151 ..      85     189 .. 0.47
   2 !   15.7   1.3   2.2e-06    0.0075     115     190 ..     227     302 ..     213     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.031
                  HH--------HH..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00015.16 161 qsasieevnqav..eeidevtkenaalveeaaaaaetle 197
                  +  s ++ n+a   +ei+  t e ++l +  +++ + + 
  MMETSP0890-20130614|15652_1 113 LMVSFDDANEAAmdQEIEGKTREATRLFRSCESSLKRIA 151
                  333334433322112333333333333333333333322 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.2e-06
                  ........-----HHHHH---CCCCHHHHCCCHHHH---HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH CS
   PF00015.16 115 slqevrteveegselveetgealkeIveavaeiadlvqeiaaaseeqsasieevnqaveeidevtkenaalveeaa 190
                    ++  + v+    lv e  e++++I+e+++e +++ +e+a+ + +q + ++ +  ++e+++e t + +  +e a+
  MMETSP0890-20130614|15652_1 227 FNEQQIQAVADIEALVVERDEEIRKIAESIQELSTIFKELAVLVIDQGTILDRIDFNMEQVAEHTRKGVIEIEKAE 302
                  55556667777778889999*******************************************9998866666554 PP

>> PF01655.13  Ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05       0.1       7      88 ..     170     256 ..     165     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3e-05
                  -TTTTT-TTS-SS--------.-TTT--------.---------TTT------...--EEEEESSGGGG---..----EEEEE-TT- CS
   PF01655.13   7 RhesdrykrlkesWRkpkGid.skvRrrfkgkpk.mpkiGYgspkkvrglhps...GfkevlvhnvkdLekllmdnktqaaeiastV 88 
                  R    r++rl++  R+ +G+  s+++r+ +g  + + +   g++++v +  ++   Gf+e  ++ v+d+e+l+ + ++++ +ia+++
  MMETSP0890-20130614|15652_1 170 RGMALRIQRLNQDFRRSQGEYlSRLKRQKEGANDaTFDFLSGGQAAVDYAVQDdsgGFNEQQIQAVADIEALVVERDEEIRKIAESI 256
                  56667899***********65266666666554314455558889999887766679***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.69
# Mc/sec: 1180.81
//
Query:       MMETSP0890-20130614|15694_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 196.37
//
Query:       MMETSP0890-20130614|15718_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-17   62.9   0.6    1.9e-17   62.8   0.4    1.0  1  PF13424.1  Tetratricopeptide repeat
    2.1e-16   59.0   0.3    4.9e-07   29.3   0.1    2.0  2  PF13374.1  Tetratricopeptide repeat
    8.3e-09   34.4   0.4    0.00045   19.7   0.1    2.1  2  PF13176.1  Tetratricopeptide repeat
    2.7e-08   32.9   4.6      3e-05   23.2   0.2    2.1  2  PF00515.23 Tetratricopeptide repeat
    4.3e-07   29.3   1.2     0.0006   19.2   0.1    2.0  2  PF13414.1  TPR repeat
    8.6e-07   28.2   4.0    0.00015   21.2   0.3    2.1  2  PF07719.12 Tetratricopeptide repeat
    0.00011   21.6   1.0       0.36   10.6   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
    0.00017   21.5   0.1      0.011   15.9   0.0    2.2  2  PF07721.9  Tetratricopeptide repeat
    0.00021   21.7   0.8      0.025   15.1   0.1    2.1  2  PF13432.1  Tetratricopeptide repeat
    0.00022   21.4   0.5      0.056   13.9   0.3    2.1  2  PF13428.1  Tetratricopeptide repeat
    0.00093   19.1   0.6     0.0045   16.9   0.0    2.1  2  PF13431.1  Tetratricopeptide repeat
     0.0015   18.5   0.4     0.0018   18.2   0.3    1.1  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.081   12.8   0.0      0.097   12.6   0.0    1.3  1  PF14346.1  Domain of unknown function (DUF4398)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.4   1.8e-20   1.9e-17      10      73 ..       2      66 .]       1      66 [] 0.97

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 1.8e-20
    PF13424.1 10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73
                  la++l+ +g yd+A  +ye al+   +++g+dh+ +a+aln+la+l+  +g+yd+A++++e+Al
  MMETSP0890-20130614|15718_1  2 DLAGLLKDQGYYDKATPHYECALKFcEEQFGPDHLKVAKALNDLAELLFLQGNYDQAKPLHERAL 66
                 69***********************99999**********************************8 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   9.7e-10     1e-06       7      40 ..       2      35 ..       1      36 [. 0.97
   2 !   29.3   0.1   4.7e-10   4.9e-07       1      29 [.      38      66 .]      38      66 .] 0.97

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 9.7e-10
    PF13374.1  7 nLAlalrargryeeAlaleeealairrrllGddH 40
                 +LA +l ++g y++A +++e al  +++ +G+dH
  MMETSP0890-20130614|15718_1  2 DLAGLLKDQGYYDKATPHYECALKFCEEQFGPDH 35
                 69******************************** PP

  == domain 2    score: 29.3 bits;  conditional E-value: 4.7e-10
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeeal 29
                 +a aln+LA +l+ +g+y++A +l+e+al
  MMETSP0890-20130614|15718_1 38 VAKALNDLAELLFLQGNYDQAKPLHERAL 66
                 799************************98 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     4e-05     0.042       5      34 ..       3      32 ..       1      34 [. 0.88
   2 !   19.7   0.1   4.3e-07   0.00045       1      26 [.      41      66 .]      41      66 .] 0.94

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4e-05
    PF13176.1  5 LarlysrlgdyekAielyeraLaltkdpld 34
                 La l  ++g+y+kA  +ye aL++ +++++
  MMETSP0890-20130614|15718_1  3 LAGLLKDQGYYDKATPHYECALKFCEEQFG 32
                 89999**************99999888876 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 4.3e-07
    PF13176.1  1 allnLarlysrlgdyekAielyeraL 26
                 al+ La+l + +g+y++A  l+eraL
  MMETSP0890-20130614|15718_1 41 ALNDLAELLFLQGNYDQAKPLHERAL 66
                 7999********************65 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   0.00011      0.12      10      31 ..       6      27 ..       2      30 .. 0.82
   2 !   23.2   0.2   2.9e-08     3e-05       1      28 [.      39      66 .]      39      66 .] 0.97

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
                 HHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23 10 aylklgkydeAleyyekALeln 31
                 ++  +g yd+A  +ye AL+  
  MMETSP0890-20130614|15718_1  6 LLKDQGYYDKATPHYECALKFC 27
                 5677788************976 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 2.9e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekAL 28
                 akal+ l+ +++ +g+yd+A    e+AL
  MMETSP0890-20130614|15718_1 39 AKALNDLAELLFLQGNYDQAKPLHERAL 66
                 89************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00061      0.64       9      34 ..       3      28 ..       1      36 [. 0.82
   2 !   19.2   0.1   5.7e-07    0.0006       2      30 ..      38      66 .]      37      66 .] 0.95

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00061
    PF13414.1  9 lGnalfkegdydeAieayekAleldp 34
                 l+  l  +g yd+A  +ye Al+ ++
  MMETSP0890-20130614|15718_1  3 LAGLLKDQGYYDKATPHYECALKFCE 28
                 5667778999************9875 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 5.7e-07
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAl 30
                 +A+al+ l++ lf +g+yd+A  + e+Al
  MMETSP0890-20130614|15718_1 38 VAKALNDLAELLFLQGNYDQAKPLHERAL 66
                 79*************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2    0.0015       1.5       7      30 ..       3      26 ..       1      29 [. 0.83
   2 !   21.2   0.3   1.4e-07   0.00015       1      28 [.      39      66 .]      39      66 .] 0.96

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  7 lGlayyklgdyeeAleafekAlel 30
                 l+ ++  +g y++A  ++e Al+ 
  MMETSP0890-20130614|15718_1  3 LAGLLKDQGYYDKATPHYECALKF 26
                 6668899***********988875 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAl 28
                 a+al+ l+++++ +g+y++A+ + e+Al
  MMETSP0890-20130614|15718_1 39 AKALNDLAELLFLQGNYDQAKPLHERAL 66
                 79***********************998 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00043      0.45      10      29 ..       6      25 ..       2      31 .. 0.85
   2 !   10.6   0.1   0.00034      0.36       1      21 [.      39      59 ..      39      66 .] 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00043
                 HHHHTT-HHHHHHHHH---H CS
    PF13181.1 10 iYrqlGdydkAkeylekale 29
                 ++++ G ydkA  ++e al+
  MMETSP0890-20130614|15718_1  6 LLKDQGYYDKATPHYECALK 25
                 7899***********98877 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00034
                 ---TTT---HHHHTT-HHHHH CS
    PF13181.1  1 akayynlGdiYrqlGdydkAk 21
                 aka++ l+++++  G+yd+Ak
  MMETSP0890-20130614|15718_1 39 AKALNDLAELLFLQGNYDQAK 59
                 589999**************8 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.078        82       6      24 ..       2      20 ..       1      21 [. 0.84
   2 !   15.9   0.0   1.1e-05     0.011       3      21 ..      41      59 ..      39      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.078
                 --HHHHHH-------HHHH CS
    PF07721.9  6 aLArallalGdldeArall 24
                 +LA +l ++G +d A  + 
  MMETSP0890-20130614|15718_1  2 DLAGLLKDQGYYDKATPHY 20
                 7999999*******97765 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.1e-05
                 HH---HHHHHH-------H CS
    PF07721.9  3 allaLArallalGdldeAr 21
                 al +LA++l+++G++d+A 
  MMETSP0890-20130614|15718_1 41 ALNDLAELLFLQGNYDQAK 59
                 6779**************6 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.025        27      36      58 ..       2      24 ..       1      36 [. 0.73
   2 !   15.1   0.1   2.4e-05     0.025       2      24 ..      44      66 .]      43      66 .] 0.94

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.025
    PF13432.1 36 llaeallrlgrldeAaallraal 58
                  la +l ++g +d+A   ++ al
  MMETSP0890-20130614|15718_1  2 DLAGLLKDQGYYDKATPHYECAL 24
                 46777778888888888887777 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.4e-05
    PF13432.1  2 alArallraGdydeAlaaleaal 24
                 +lA++l+ +G+yd+A +++e+al
  MMETSP0890-20130614|15718_1 44 DLAELLFLQGNYDQAKPLHERAL 66
                 79******************997 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018        19       5      25 ..       1      21 [.       1      38 [. 0.85
   2 !   13.9   0.3   5.3e-05     0.056       2      28 ..      40      66 .]      39      66 .] 0.93

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.018
    PF13428.1  5 lalarallalGdpdeAiallr 25
                 l+la +l ++G +d+A  +++
  MMETSP0890-20130614|15718_1  1 LDLAGLLKDQGYYDKATPHYE 21
                 689*************99987 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.3e-05
    PF13428.1  2 eallalarallalGdpdeAiallrral 28
                 +al +la++l+ +G++d+A  l +ral
  MMETSP0890-20130614|15718_1 40 KALNDLAELLFLQGNYDQAKPLHERAL 66
                 7999*****************999997 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.68   7.1e+02      19      32 ..       3      16 ..       1      17 [. 0.83
   2 !   16.9   0.0   4.3e-06    0.0045      13      33 ..      39      59 ..      22      60 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.68
    PF13431.1 19 LAelllnnGdleeA 32
                 LA ll+++G +++A
  MMETSP0890-20130614|15718_1  3 LAGLLKDQGYYDKA 16
                 67789999999988 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.3e-06
    PF13431.1 13 adaynnLAelllnnGdleeAe 33
                 a a+n LAell+ +G++++A+
  MMETSP0890-20130614|15718_1 39 AKALNDLAELLFLQGNYDQAK 59
                 89*****************97 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   1.7e-06    0.0018       1      45 [.       9      59 ..       9      65 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.7e-06
                 HTT-HHHHHHHHHHHCCC-ST....-HHHH...CHHH.HHHHHHH---HHHHH CS
    PF12895.2  1 eqhnyknAlflaekllaespk....dpeda...ylya.lAlclylngeykrAy 45
                 +q+ y++A  ++e +l+ + +    d  +     +++ lA+ l+l+g+y++A 
  MMETSP0890-20130614|15718_1  9 DQGYYDKATPHYECALKFCEEqfgpD--HLkvaKALNdLAELLFLQGNYDQAK 59
                 6899***************9866543..33334444459************94 PP

>> PF14346.1  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.2e-05     0.097      34      71 ..      28      65 ..       8      66 .] 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.2e-05
    PF14346.1 34 aekyapveLeeAkekLaaAkaalaegkyeeArrlaeqA 71
                  e+  p +L+ Ak+  + A+ ++ +g+y++A+ l e+A
  MMETSP0890-20130614|15718_1 28 EEQFGPDHLKVAKALNDLAELLFLQGNYDQAKPLHERA 65
                 5777799*************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 222.76
//
Query:       MMETSP0890-20130614|15770_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.034   13.9   4.4        1.6    8.6   2.1    2.5  2  PF00170.16 bZIP transcription factor
       0.05   12.8   1.0      0.081   12.1   0.7    1.5  1  PF00889.14 Elongation factor TS
      0.086   12.7   0.2       0.15   11.9   0.1    1.6  1  PF08718.6  Glycolipid transfer protein (GLTP)


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0079        36      24      44 ..      22      42 ..      20      55 .. 0.84
   2 ?    8.6   2.1   0.00034       1.6      24      54 ..      96     126 ..      78     128 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0079
                 HHHHHHHHHHHHHHHHHHH.. CS
   PF00170.16 24 KkaeieeLeekvkeLeaeNka 44
                 K + +e+L e ++++ ++N++
  MMETSP0890-20130614|15770_1 22 KFEHTEQLGEACAAFVSKNQE 42
                 55789**************75 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00034
                  HHHHHHHHHHHHHHHHHHH.......HHHHH CS
   PF00170.16  24 KkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                  K ae+e++++  k+L +   +Lk+++e+l++
  MMETSP0890-20130614|15770_1  96 KTAELERYQRQHKALVQVEADLKSRIERLSN 126
                  899**************************87 PP

>> PF00889.14  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   1.8e-05     0.081      26      79 ..      36      96 ..      32     125 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   PF00889.14 26 FVAknekFqelvkkvaeaal.ekkaadveellalklee......ktvedalkeaiakigEn 79
                 FV+kn++F +lv++v++ +  +++  + e+l+a+ +++      ++ +++++++ a + E+
  MMETSP0890-20130614|15770_1 36 FVSKNQEFGKLVASVVQVVDaNAQRIEREKLKAIGMRNlvlserENRDQTRRALRALVAEK 96
                 ***************9988622333345567777666654443333344444444455554 PP

>> PF08718.6  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.3e-05      0.15       5      67 ..      26      83 ..      22     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.3e-05
    PF08718.6  5 tkefleackelvkvfdklGsvfslvkkDikgkitkleelakesepeeykslqslvkkelekgl 67
                 t+++ eac  +v+  +++G++++ v + ++ + +++e+ +      +   +++lv +e e+  
  MMETSP0890-20130614|15770_1 26 TEQLGEACAAFVSKNQEFGKLVASVVQVVDANAQRIEREKL-----KAIGMRNLVLSERENRD 83
                 88999********************************9773.....46788999999988843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1215  (0.0888678); expected 273.4 (0.02)
Passed bias filter:                      722  (0.0528087); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.46s 00:00:00.96 Elapsed: 00:00:00.72
# Mc/sec: 429.35
//
Query:       MMETSP0890-20130614|15788_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-15   55.1   0.8    1.1e-06   28.2   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.072   11.1   0.0      0.072   11.1   0.0    1.1  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   7.8e-10   5.3e-06      16      39 .]       2      26 ..       1      26 [. 0.96
   2 !   28.2   0.0   1.6e-10   1.1e-06       6      33 ..      34      61 ..      30      62 .] 0.94

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 7.8e-10
                 EEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27 16 cvafspd.gpllasgSrDgtirlWd 39
                  +a+sp+  + lasg +D+ +r+W+
  MMETSP0890-20130614|15788_1  2 TIAWSPSnNTQLASGAADNIVRIWN 26
                 59**********************7 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 1.6e-10
                 EEESSSSSEEEEEEESSSTEEEEEETTS CS
   PF00400.27  6 tlrgHtspVtcvafspdgpllasgSrDg 33
                 +l+gH+++V+++a+s dg  l+s+S+D+
  MMETSP0890-20130614|15788_1 34 ELEGHEGGVNSIAYSRDGITLVSASDDH 61
                 799************************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05     0.072     232     255 ..      11      34 ..       2      60 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
    PF11715.3 232 tfvftlsrDgkLRvWnletgqclr 255
                  t +++  +D+ +R+Wn++t+ c++
  MMETSP0890-20130614|15788_1  11 TQLASGAADNIVRIWNTDTNECIE 34 
                  556666789*************43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 247.62
//
Query:       MMETSP0890-20130614|15824_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-21   73.1   0.0    1.5e-20   72.4   0.0    1.3  1  PF04117.7 Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> PF04117.7  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.1e-24   1.5e-20       1      66 [.     168     233 ..     168     235 .. 0.97

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.1e-24
    PF04117.7   1 msllegksleeikeklkekflptlkanwmvWpavqlinFafvPlhyrvlfvnlvslgWntyLSlik 66 
                  m+++eg  ++  + k+k++  +  + +w+vWp++ +inF+fvP + rvl++n++++++n++LS+i 
  MMETSP0890-20130614|15824_1 168 MGIFEGAGIDGTITKIKRDLITQVTGSWTVWPLAHAINFKFVPTEQRVLYINTIQIFYNCFLSIIG 233
                  99*************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:01.42
# Mc/sec: 405.02
//
Query:       MMETSP0890-20130614|15906_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-09   37.0   0.1    2.4e-09   36.6   0.0    1.2  1  PF02225.17 PA domain


Domain annotation for each model (and alignments):
>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.8e-13   2.4e-09       8      65 ..      52     105 ..      45     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.8e-13
   PF02225.17   8 gplvsagygisegsckdddlaksdvkGkIvlvrrgvc.tfsekaevaqeaGAkgviiin 65 
                  +++v     ++++   +++l+ + + G Iv ++rg+  ++++k+ +aq+aGA g+ii++
  MMETSP0890-20130614|15906_1  52 ASVV-----YAVPNDLQKSLNSEEMFGRIVMCDRGNDiPLVQKIINAQSAGALGIIIVD 105
                  5566.....788889999**************88876699******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 490.16
//
Query:       MMETSP0890-20130614|15955_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-26   90.8   0.0    6.7e-26   90.5   0.0    1.2  1  PF00410.14 Ribosomal protein S8


Domain annotation for each model (and alignments):
>> PF00410.14  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   4.9e-30   6.7e-26       2     128 ..       6     129 ..       5     130 .] 0.93

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 4.9e-30
   PF00410.14   2 tiadmltrirNaqkakkeevsv.pssklkekileiLkkeGyIksfeaeedeeekkklkieLkYkkkkkpvikkikrvSkpglrvyakkkelpk......vlrglgililsTskGvmtdreArkkkvGGevlckv 128
                   +ad+l++i Na+k++k++v v pssk+++k+l+ ++k+GyI +fe+ +d++  k + ie         +  +i++++ +++r+ ++ k+++k        r++g ++lsT  G+m+++eA++k++GG+vl ++
  MMETSP0890-20130614|15955_1   6 VLADCLKSISNAEKRGKRQVLVrPSSKVIVKFLQCMQKHGYIGEFEIVDDHRAGK-IVIE---------LTGRINKCGVISPRFDVEIKDIEKwinnllPSRQFGHIVLSTTFGIMDHEEAKRKRTGGKVLGFF 129
                  689************************************************9855.9999.........678*********************877754449*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.95
# Mc/sec: 327.92
//
Query:       MMETSP0890-20130614|15976_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:01.24
# Mc/sec: 345.93
//
Query:       MMETSP0890-20130614|15977_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-11   42.8   0.0    3.5e-11   42.7   0.0    1.0  1  PF13306.1 Leucine rich repeats (6 copies)
  ------ inclusion threshold ------
      0.073   12.7   0.0       0.83    9.3   0.0    1.8  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   5.2e-15   3.5e-11       3      46 ..       2      45 ..       1      46 [] 0.69

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 5.2e-15
    PF13306.1  3 IgsyaFyncknltsitipssvtsIgeyaFsncsslksitlpssl 46
                 Ig  aF++c++lt+ t+p  +t+I  +aF +c+sl++it+p  l
  MMETSP0890-20130614|15977_1  2 IGYGAFEECTSLTQATLPAGLTTIAHKAFGGCTSLTQITMPVGL 45
                 66777777777777777777777777777777777777777655 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.032   2.2e+02      43      52 ..       5      14 ..       2      18 .. 0.71
   2 ?    9.3   0.0   0.00012      0.83      13      30 ..      22      39 ..      17      41 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.032
    PF13855.1 43 eafkgLpsLr 52
                 +af+ ++sL+
  MMETSP0890-20130614|15977_1  5 GAFEECTSLT 14
                 6777777776 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00012
    PF13855.1 13 lkvipdgaFkglsnLkvL 30
                 l++i++ aF+g+++L+ +
  MMETSP0890-20130614|15977_1 22 LTTIAHKAFGGCTSLTQI 39
                 788888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       134  (0.00980105); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.75
# Mc/sec: 146.98
//
Query:       MMETSP0890-20130614|15978_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-18   64.4   0.0    1.1e-17   64.0   0.0    1.1  1  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
    2.8e-15   56.7   0.0      5e-15   55.9   0.0    1.4  1  PF12681.2  Glyoxalase-like domain
    1.6e-06   27.9   0.0    1.2e-05   25.1   0.0    2.0  1  PF13669.1  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily


Domain annotation for each model (and alignments):
>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   2.5e-21   1.1e-17       3     128 .]      47     197 ..      45     197 .. 0.90

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 2.5e-21
                  EEEEEEES-HHHHHHHHHHHH--EEEEEEEE...............SCSC.CEEEEEEEETSSCEEEEEEEECCTTSCTCHHH.............EECSEEEEEEEECEHHHHHHHHHHHHH-SGEEEEEECHHHHCEEEEEEEE-TT--EEEE CS
   PF00903.20   3 dhvalavgdleksldFYtkvLGfklvkktdn...............teet.eglriaffhaggghielvlneapsgaakhvkk.............ieetvhhvafialdvedvgkaldrlkeagvkvvaepgrhyfgalysfyfrDpdGillei 128
                  ++++++v+d++ sl+FY + LGfkl+   d+               + +t +  r +   +  g+iel++n++ ++ + +v++                   +++++  +vedv++ + r+ke gv++++ p+  ++++l +  ++DpdG+l+e+
  MMETSP0890-20130614|15978_1  47 QQTMIRVKDPAVSLKFYVETLGFKLIMHRDFpqwgfsvyfvahgvdNVPTsQDERWTMCMNTPGCIELTWNHGSESTQGRVYNvgnsdttgvpngdK--VKGGFGHLGITVEDVYESCARFKELGVQFHKSPNGGGMKGLAF--IKDPDGYLIEV 197
                  6789**************************************999966666899999999*********************8877777776655431..5679**************************************6..9********96 PP

>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.1e-18     5e-15       1     107 [.      51     197 ..      51     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 1.1e-18
    PF12681.2   1 lpvsdleaaraFYeklLGfevae.eegdfvtlslglalg........................................sgvrellgldepeapggggvhlafevedldalvarlkaaGakvlgepedepwggrefyvrDPdGnliel 107
                  ++v+d++ +++FY++ LGf++   ++  ++++s ++ ++                                         g  + +g + ++  +gg  hl ++ved+ +  ar k++G+++ ++p   +++   ++++DPdG+lie+
  MMETSP0890-20130614|15978_1  51 IRVKDPAVSLKFYVETLGFKLIMhRDFPQWGFSVYFVAHgvdnvptsqderwtmcmntpgcieltwnhgsestqgrvynVGNSDTTGVPNGDKVKGGFGHLGITVEDVYESCARFKELGVQFHKSPNG-GGMKGLAFIKDPDGYLIEV 197
                  79*********************7555778999999988999999999999999999988877777777777776666655566666667888899*****************************988.455578999********98 PP

>> PF13669.1  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.7e-09   1.2e-05       2     103 ..      48     181 ..      47     187 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.7e-09
                  EE-EE-S-HHHHHHHHHH.---EESS--E.EETTTTEEEEEEE---.................-EEEEEEE-----THHH.................---B---EEEEES-HHHHHHHHHT---EEEEEEE-GGG CS
    PF13669.1   2 qvgivVpDleaavaefskllGvgpweryrdepqnvdlafarlgdgsa................vqielieplegesflae.................hgeglhHlafevddldaavarleeqGfrvlqkgvraga 103
                  q  i V+D    +++++++lG++   +  ++++++ ++f+ +g + +                  iel  ++  es+  +                  ++g+ Hl+++v+d+ +  ar++e G+++ ++ +  g 
  MMETSP0890-20130614|15978_1  48 QTMIRVKDPAVSLKFYVETLGFKLIMHRDFPQWGFSVYFVAHGVD-NvptsqderwtmcmntpGCIELTWNHGSESTQGRvynvgnsdttgvpngdkVKGGFGHLGITVEDVYESCARFKELGVQFHKSPNGGGM 181
                  899*******************99888888877666665555544.22455555555555555468888888888666666667777778888888899**************************9887655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:01.05
# Mc/sec: 515.79
//
Query:       MMETSP0890-20130614|16078_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1720  (0.125805); expected 273.4 (0.02)
Passed bias filter:                     1071  (0.0783353); expected 273.4 (0.02)
Passed Vit filter:                       171  (0.0125073); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.49s 00:00:00.90 Elapsed: 00:00:00.90
# Mc/sec: 149.11
//
Query:       MMETSP0890-20130614|16086_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.43s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 389.41
//
Query:       MMETSP0890-20130614|16098_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   15.8   0.1      0.039   13.8   0.0    2.1  1  PF12898.2 Stc1 domain


Domain annotation for each model (and alignments):
>> PF12898.2  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.9e-06     0.039      51      74 ..     205     236 ..     169     245 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.9e-06
    PF12898.2  51 l........eCskCkktkpleeFskkqrrqkd 74 
                           +Cs C++++p ++Fs  qr+  +
  MMETSP0890-20130614|16098_1 205 EsiippnhlWCSDCGNWRPSDSFSAVQRKLAE 236
                  045555555******************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1644  (0.120246); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.44u 0.42s 00:00:01.86 Elapsed: 00:00:01.83
# Mc/sec: 549.98
//
Query:       MMETSP0890-20130614|16271_1  [L=823]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-69  234.1   0.0    1.6e-69  233.5   0.0    1.3  1  PF01434.13 Peptidase family M41
    3.3e-42  143.7   0.0    5.9e-42  142.8   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.8e-10   40.8   1.5    1.3e-08   34.8   1.0    2.9  1  PF06480.10 FtsH Extracellular
    0.00024   21.0   0.0      0.018   15.0   0.0    2.4  1  PF13401.1  AAA domain
     0.0014   19.2   0.0     0.0061   17.2   0.0    2.1  1  PF13207.1  AAA domain
     0.0015   17.2   0.0     0.0024   16.5   0.0    1.3  1  PF06068.8  TIP49 C-terminus
     0.0026   17.0   1.0      0.038   13.2   0.2    2.3  2  PF13481.1  AAA domain
     0.0036   16.6   0.1      0.013   14.8   0.0    1.8  2  PF01695.12 IstB-like ATP binding protein
     0.0093   15.5   0.2      0.055   13.0   0.1    2.3  1  PF07728.9  AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.033   13.1   0.0    1.7  1  PF06414.7  Zeta toxin
      0.013   15.2   0.0      0.039   13.7   0.0    1.8  1  PF07724.9  AAA domain (Cdc48 subfamily)
      0.018   15.3   0.2      0.064   13.5   0.1    1.9  2  PF13191.1  AAA ATPase domain
      0.027   13.3   0.0      0.054   12.4   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.034   13.7   0.8       0.12   12.0   0.5    1.9  1  PF13245.1  Part of AAA domain
       0.04   13.6   0.0      0.082   12.6   0.0    1.6  1  PF13671.1  AAA domain
       0.05   12.6   0.2       0.15   11.0   0.2    1.7  2  PF01078.16 Magnesium chelatase, subunit ChlI
      0.055   13.2   0.0       0.12   12.2   0.0    1.5  1  PF13173.1  AAA domain
      0.059   13.5   0.0       0.73   10.0   0.0    2.3  2  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01434.13  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.5   0.0   2.1e-72   1.6e-69       3     211 ..     554     755 ..     552     757 .. 0.97

  Alignments for each domain:
  == domain 1    score: 233.5 bits;  conditional E-value: 2.1e-72
                  HHHHHCCHHHH------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01434.13   3 keleeaidrvlaGlekksrvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlflpeedkllltkeqllariavllgGraaEelifgedevttGasnDlekvtklarqmvtefGmseklGpvaleeeeeeevflgrelkkekelseetaeeideevkelveeayerakeilkenreelealaeaLlekEtldaeeie 211
                  +++e a dr++ Gle  +r++++ ek++vA+HEaGHa++g++l++adp+ Kvti+PRg+ alG++++lp+e   l t+eq+++ ++++lgGra+E+l+fg  +vttGas+Dl++vt+++++m++ +Gm++++G++a+ +++e+++f      +++++s++ta+++dee k++v++ay+r+ ++l ++++e+ +la+ L++kEt+++++i 
  MMETSP0890-20130614|16271_1 554 SDFEAAADRIIGGLES-NRIMTDDEKRIVAFHEAGHAVAGWFLEHADPLLKVTIVPRGSgALGYAQYLPNEI-ALRTREQIIDVVCMALGGRASEQLTFG--SVTTGASDDLRRVTQMVYSMIQIYGMNDRVGQLAFPSQQESNPFG----GNDRPYSDATAQAMDEEAKSIVDSAYQRTLDLLASKKDEVTRLANLLIKKETINHDDIV 755
                  689************9.8****************************************************99.589************************..****************************************99999....5678***************************************************9985 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.0   7.7e-45   5.9e-42       2     131 ..     357     489 ..     356     490 .. 0.96

  Alignments for each domain:
  == domain 1    score: 142.8 bits;  conditional E-value: 7.7e-45
                  EEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
   PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                  ll+GppGtGKTllaka a e++v+f++isgse+++++vg +++++r+lfkea+++a p+i+fiDEida++++r      + ++e+e+++nqLl e+dg++++++ v+v++ tnr+d ld+al r gRfdr+i ++
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATAGEASVPFYSISGSEFVEMFVGVGPSRVRDLFKEARANA-PCIVFIDEIDAVGRQRgrggFAGGNDERENTLNQLLVEMDGFTESTN-VVVLAGTNRVDVLDKALTRpGRFDRQITVD 489
                  8******************************************************9.*****************98877899*******************855.**************************9875 PP

>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   1.0   1.8e-11   1.3e-08       2     106 ..      80     244 ..      80     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.8e-11
   PF06480.10   2 llwlllalvlllllnslfggsgtgspkeisyseFl.edleagnvskvvvdestis.................................................................palirrptgdgvsktkkgnstttyytptlgsvdslekkLeealkelgvdpe 106
                  ++ +++al+ll++++s +    ++s+ ei+++eF    le+g+v+++vv +++i+                                                                 p  i ++  ++++  ++++s++ y  + +gsv+ +e+kLe+a++elg++p 
  MMETSP0890-20130614|16271_1  80 IVSTVAALGLLGVWLSSR----ESSGTEINWQEFAtVLLESGEVDRIVVSNNKIAevflrpgavrqqsigpfqsssvknntsglivpdedvttektywdngsstssekqeknassaytryPRMIGSAPSSLSG-MQSSSSSPQY-HFAIGSVEIFERKLEAAQRELGIEPR 244
                  577899999999999555....56**********879999****************************************************************************99854444444444444.3333333333.334467*****************996 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.4e-05     0.018       7      49 ..     356     388 ..     353     472 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.4e-05
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast 49 
                  ++++G++G+GKT+l++  a           +a+v f+ ++ s 
  MMETSP0890-20130614|16271_1 356 ALLCGPPGTGKTLLAKATAG----------EASVPFYSISGSE 388
                  589*************9888..........4455555555544 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.1e-06    0.0061       4      58 ..     358     422 ..     357     505 .. 0.58

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.1e-06
                  -B--TT---HHHHHHHHHHSTEEEEEGGG..B-.........-GGGS-B-----B--SSGGGB-HH CS
    PF13207.1   4 itGppGsGKsTlakeLaerlglpvlsldd..ll.........reeglkelddgereskdadadlla 58 
                  ++GppG+GK+ lak+ a +  +p +s++   ++         r+++l +  + +  + +  +d+++
  MMETSP0890-20130614|16271_1 358 LCGPPGTGKTLLAKATAGEASVPFYSISGseFVemfvgvgpsRVRDLFKEARANAPC-IVFIDEID 422
                  79*********************9888885333556555555444444222222233.22333333 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.2e-06    0.0024      51      88 ..     354     389 ..     306     395 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.2e-06
    PF06068.8  51 ravLlaGppgtGktalaiaiskelgedvpfvalsgsev 88 
                  ++ Ll GppgtGkt la a + e +  vpf ++sgse+
  MMETSP0890-20130614|16271_1 354 KGALLCGPPGTGKTLLAKATAGEAS--VPFYSISGSEF 389
                  789*****************99976..*********97 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2     5e-05     0.038      30      65 ..     352     391 ..     327     401 .. 0.75
   2 ?    2.3   0.0      0.11        84     130     184 ..     401     463 ..     393     464 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5e-05
    PF13481.1  30 lprgsltllaGapgtGKStlalqlaaava......tGepflg 65 
                  +p+g  +ll G+pgtGK+ la ++a+ ++      +G +f  
  MMETSP0890-20130614|16271_1 352 IPKG--ALLCGPPGTGKTLLAKATAGEASvpfysiSGSEFVE 391
                  4666..59*****************99987777777777765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.11
    PF13481.1 130 lerllaaieelegpdlvviDtlsrlvgg.......densnsdv..gaviaalerlakrtgaavl 184
                  +++l +++++ + p +v iD ++++ ++       + n++++   ++++ +++ + ++t++ vl
  MMETSP0890-20130614|16271_1 401 VRDLFKEARA-NAPCIVFIDEIDAVGRQrgrggfaGGNDERENtlNQLLVEMDGFTESTNVVVL 463
                  6778889999.78*********999988888889966666664479*************99997 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.013      50      72 ..     356     378 ..     351     410 .. 0.86
   2 ?   -2.0   0.0       2.5   1.9e+03       9      47 ..     537     576 ..     531     582 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-05
   PF01695.12  50 lvllGpsGvGKthlAialgveav 72 
                   +l+Gp+G+GKt lA a + ea 
  MMETSP0890-20130614|16271_1 356 ALLCGPPGTGKTLLAKATAGEAS 378
                  689**************998875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.5
   PF01695.12   9 klaklp.akktledfdfdaargldkrlikelaslsfveqa 47 
                  ++a++  a+++ e++df+  + +  r i  l s + +++ 
  MMETSP0890-20130614|16271_1 537 NEAAIVaARRNKEKVDFSDFEAAADRIIGGLESNRIMTDD 576
                  5555555889999999999999999999988877766665 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   7.2e-05     0.055       3      78 ..     357     425 ..     355     479 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.2e-05
                  EEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B--.........--------..G-SEEEEESGGG-- CS
    PF07728.9   3 lLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraar..egeilvlDEverae 78 
                  lL GppGtgK+ la+  a     ++  + ++++ +    +g+ ++           l ++ar   ++i+++DE++ + 
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATAGEASVPFYSISGSEFVEMFVGVGPSRV---------RDLFKEARanAPCIVFIDEIDAVG 425
                  8**************999988888888888888776666666666.........666666666688888888888665 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.4e-05     0.033      16      53 ..     353     389 ..     341     411 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-05
    PF06414.7  16 pkavllgGqpGAGKtslaellleelaagnivridaDel 53 
                  pk  ll+G+pG GKt la+++ +e+ +  +  i++ e+
  MMETSP0890-20130614|16271_1 353 PKGALLCGPPGTGKTLLAKATAGEA-SVPFYSISGSEF 389
                  8999********************9.888888888777 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-05     0.039       7      84 ..     357     432 ..     353     459 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.1e-05
                  EEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--.-EEEETGGG----....- CS
    PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihpk....e 84 
                  ll+gp g+Gkt+laka+a   +v    ++  +  se+ e   +   v    +   +  ++++   iv++DEid + ++    +
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATAGEASV----PFYSISGSEFVE---MFVGVGPSRVRDLFKEARANAPcIVFIDEIDAVGRQrgrgG 432
                  789******************98....************...55555555555555555444446********9998654433 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.4e-05     0.064      24      44 ..     351     374 ..     329     408 .. 0.77
   2 ?   -2.8   0.0       8.6   6.5e+03     125     141 ..     408     422 ..     389     429 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.4e-05
    PF13191.1  24 p...lllvtGpsGiGKSsLlrela 44 
                        l+ Gp+G+GK+ L++++a
  MMETSP0890-20130614|16271_1 351 KipkGALLCGPPGTGKTLLAKATA 374
                  1556899*************9954 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 8.6
    PF13191.1 125 lartrrpklvlvlDDlq 141
                  ++ ++  ++++++D+++
  MMETSP0890-20130614|16271_1 408 ARANA--PCIVFIDEID 422
                  22222..4999999765 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05     0.054      53      85 ..     356     388 ..     344     427 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7e-05
    PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPv 85 
                   ll+GpPG Gkt lak  a e  v + + sg  
  MMETSP0890-20130614|16271_1 356 ALLCGPPGTGKTLLAKATAGEASVPFYSISGSE 388
                  69**********************999988864 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00015      0.12      14      31 ..     357     374 ..     347     380 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00015
    PF13245.1  14 vvtGgPGtGKTttlaaii 31 
                  ++ G+PGtGKT ++ a +
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATA 374
                  448********5555444 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.082       3      24 ..     357     378 ..     356     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
    PF13671.1   3 llvGlpGsGKstlaerllkklg 24 
                  ll+G+pG+GK+ la++ + +  
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATAGEAS 378
                  79*************9887765 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2    0.0002      0.15      26      42 ..     357     373 ..     348     378 .. 0.90
   2 ?   -3.1   0.0       4.3   3.3e+03      39      80 ..     517     558 ..     516     562 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0002
   PF01078.16  26 llvGppGsGKtmlakrl 42 
                  ll+GppG+GKt+lak+ 
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKAT 373
                  89************975 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.3
   PF01078.16  39 akrlpsllpplseeealevakiasvagkkeeekllkrrpfra 80 
                  a+rl++l p    +e+ ++ + a+++ +++++++++   f+a
  MMETSP0890-20130614|16271_1 517 AARLAGLTPGFAGAEIQNICNEAAIVAARRNKEKVDFSDFEA 558
                  789999999999999999999999999899988888888876 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.12       6     107 ..     357     476 ..     353     490 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00015
    PF13173.1   6 vitGpRrvGKttllkqlakellkeesilyinlddeelrkla...dpe.llelfleklkekkkylflDEiqev.............pewedalkslvd......dgrnldviltGsnskllskeia 107
                  ++ Gp ++GKt l+k  a e      + +++    e+ ++     p+ + +lf e   +   ++f+DEi  v             +e e++l++l+       + +n  v+l G n  +  ++  
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATAGEAS----VPFYSISGSEFVEMFvgvGPSrVRDLFKEARANAPCIVFIDEIDAVgrqrgrggfaggnDERENTLNQLLVemdgftESTN-VVVLAGTNRVDVLDKAL 476
                  799***********99997766....5555555555544432223445778888876667889*******9988888888888885555555555442212211123.56666766666665555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00096      0.73       2      21 ..     357     376 ..     357     418 .. 0.82
   2 ?    0.6   0.0      0.79     6e+02      23      92 ..     529     595 ..     511     630 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00096
    PF13238.1   2 litGtpGvGKtTlakeLaer 21 
                  l++G+pG+GKt lak+ a +
  MMETSP0890-20130614|16271_1 357 LLCGPPGTGKTLLAKATAGE 376
                  589************97654 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.79
    PF13238.1  23 gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkd 92 
                  g  +++++ e  ++  + +k  +k      e   d+++ +le+n+  ++++e  i+  h a + + +++ 
  MMETSP0890-20130614|16271_1 529 GAEIQNICNEAAIVAARRNK--EKVDFSDFEAAADRIIGGLESNRI-MTDDEKRIVAFHEAGHAVAGWFL 595
                  67777788888888888888..677777778888999999999998.9999999**99999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.29u 0.42s 00:00:01.71 Elapsed: 00:00:01.07
# Mc/sec: 1843.18
//
Query:       MMETSP0890-20130614|16300_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       896  (0.0655354); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.50s 00:00:01.27 Elapsed: 00:00:00.97
# Mc/sec: 1368.64
//
Query:       MMETSP0890-20130614|16387_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   15.8   0.4     0.0071   15.8   0.2    1.1  1  PF04356.7 Protein of unknown function (DUF489)


Domain annotation for each model (and alignments):
>> PF04356.7  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   5.2e-07    0.0071      41     107 ..      25      91 ..      12      96 .] 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.2e-07
    PF04356.7  41 npestedvyggeenlklGletlesqlnkkskekdaeltryalsllaLerkLsknkealaqlgerieq 107
                  + +++ ++++ e+ l++     +++l ++++ +dae++r    +++Le kL+ ++++l++ + +i++
  MMETSP0890-20130614|16387_1  25 SLRKLRALFDRESTLRENEARSHDELVRSRAASDAEMIREGSKVIELEAKLEAQENLLKASHLNIDK 91 
                  55678999************************************************99887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 353.92
//
Query:       MMETSP0890-20130614|16396_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   40.6   0.0    1.8e-10   40.2   0.0    1.1  1  PF02353.15 Mycolic acid cyclopropane synthetase
    3.9e-10   39.6   0.0    4.7e-10   39.4   0.0    1.3  1  PF13659.1  Methyltransferase domain
    1.1e-09   38.7   0.0    1.4e-09   38.3   0.0    1.2  1  PF12847.2  Methyltransferase domain
    3.2e-09   36.4   0.1    4.3e-09   36.0   0.0    1.2  1  PF13847.1  Methyltransferase domain
    1.4e-07   30.6   0.0      2e-07   30.1   0.0    1.2  1  PF02390.12 Putative methyltransferase
    2.8e-06   27.6   0.0    4.2e-06   27.0   0.0    1.3  1  PF08241.7  Methyltransferase domain
    3.7e-06   26.5   0.0    4.9e-06   26.1   0.0    1.1  1  PF01170.13 Putative RNA methylase family UPF0020
    5.5e-06   25.7   0.0    7.8e-06   25.2   0.0    1.2  1  PF08123.8  Histone methylation protein DOT1
    1.5e-05   25.1   0.0    2.1e-05   24.6   0.0    1.2  1  PF13649.1  Methyltransferase domain
      2e-05   24.1   0.0    2.9e-05   23.5   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    0.00028   20.4   0.0    0.00033   20.2   0.0    1.2  1  PF13489.1  Methyltransferase domain
    0.00035   19.8   0.1    0.00047   19.4   0.0    1.1  1  PF05175.9  Methyltransferase small domain
     0.0004   20.6   0.0    0.00058   20.1   0.0    1.3  1  PF08242.7  Methyltransferase domain
    0.00083   18.3   0.0    0.00096   18.1   0.0    1.1  1  PF00398.15 Ribosomal RNA adenine dimethylase
      0.003   17.1   0.0     0.0039   16.7   0.0    1.2  1  PF13679.1  Methyltransferase domain
     0.0038   16.6   0.0     0.0055   16.0   0.0    1.2  1  PF01555.13 DNA methylase
     0.0045   16.0   0.0     0.0052   15.8   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
  ------ inclusion threshold ------
      0.033   13.4   0.0      0.043   13.0   0.0    1.1  1  PF03602.10 Conserved hypothetical protein 95
      0.045   12.9   0.2      0.062   12.5   0.1    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
      0.058   12.3   0.0      0.065   12.1   0.0    1.1  1  PF08704.5  tRNA methyltransferase complex GCD14 subunit
      0.072   11.8   0.0      0.092   11.4   0.0    1.1  1  PF12147.3  Putative methyltransferase
      0.085   11.7   0.0        0.1   11.5   0.0    1.2  1  PF02384.11 N-6 DNA Methylase
      0.086   11.7   0.0       0.11   11.4   0.0    1.1  1  PF01596.12 O-methyltransferase
       0.12   13.1   0.0       0.18   12.5   0.0    1.3  1  PF13578.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   3.2e-13   1.8e-10      48     119 ..      16      87 ..       6      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 3.2e-13
                  HHHHHHHHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B- CS
   PF02353.15  48 laKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevkll 119
                  ++ +dl+l+ lel+  + + diGcG G  v++a+ r +++ vg+ + +++a+ a+qrv+++++e+ v+++  
  MMETSP0890-20130614|16396_1  16 HEAVDLALDLLELQSDDVVYDIGCGDGRFVVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCE 87 
                  5679****************************************************************9875 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   8.2e-13   4.7e-10       2      69 ..      32      97 ..      31     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 8.2e-13
    PF13659.1  2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellrag 69
                 d+v d+gcG G f + a+ +  a+ +g+E+ +++a+ a++++++a++++ v++r+ ++++++  l+ +
  MMETSP0890-20130614|16396_1 32 DVVYDIGCGDGRFVVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCENALTMS-TLS-E 97
                 79************99987767************************************9997.232.2 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   2.5e-12   1.4e-09       3      70 ..      32      97 ..      30     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2.5e-12
    PF12847.2  3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller 70
                 + + D+GcG G++ +e+a  r ga+ vg+++ e+ +e ar+++k++++e+ +++++ +a    s l +
  MMETSP0890-20130614|16396_1 32 DVVYDIGCGDGRFVVEAAL-RSGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCENA-LTMSTLSE 97
                 5589**************9.8**********************99**********9999.55555544 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   7.6e-12   4.3e-09       2      66 ..      29      92 ..      28     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 7.6e-12
    PF13847.1  2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieel 66
                 +s+ +v+D+GCG G++  e+a  l++ga+ vGi+i e+  e A++r++k  +e  v+++ +++  +
  MMETSP0890-20130614|16396_1 29 QSDDVVYDIGCGDGRFVVEAA--LRSGAHCVGIEIEEKRAEEARQRVKKANVEdLVQIRCENALTM 92
                 78999****************..99************************99996666666666555 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.5e-10     2e-07      20      80 ..      31      91 ..      10     103 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 3.5e-10
                 B-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH--TTB.------HHH CS
   PF02390.12 20 qklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiealglkNl.rilegdaek 80
                 + +v +IG+G G+f+v+ A +     ++GiEi++k+ e++ +++++ +++ l +i + +a +
  MMETSP0890-20130614|16396_1 31 DDVVYDIGCGDGRFVVEAALRS-GAHCVGIEIEEKRAEEARQRVKKANVEDLvQIRCENALT 91
                 3399************988765.679*********************887752566666655 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.4e-09   4.2e-06       2      54 ..      36      92 ..      35     105 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7.4e-09
    PF08241.7  2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeel 54
                 d+GcG g+++   a r++a+++g++++e+  ++a++r k+ ++e    +++++a ++
  MMETSP0890-20130614|16396_1 36 DIGCGDGRFVVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEdlvqIRCENALTM 92
                 9*****************************************999887777777666 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   8.6e-09   4.9e-06      23     104 ..      25      96 ..      21     116 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 8.6e-09
   PF01170.13  23 lagvkegdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaaklelle 104
                  l +++ +d+++D  cG G + +Eaal +              +g++i+e+  + a++  ++a+v+d++++++ +a +++ l+
  MMETSP0890-20130614|16396_1  25 LLELQSDDVVYDIGCGDGRFVVEAALRSGAHC----------VGIEIEEKRAEEARQRVKKANVEDLVQIRCENALTMSTLS 96 
                  5678999*******************865444..........4*****************************9999888443 PP

>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.4e-08   7.8e-06      34      87 ..      22      74 ..      14      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.4e-08
                 HHHHTT-----EEEEE------HHHHHHHH----EEE--B--HHHHHHHHHHHH CS
    PF08123.8 34 vldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqke 87
                  ld ++l+++dv +D+G G G+ v+ aal  g + +vG+Ei ++ +e a+++ +
  MMETSP0890-20130614|16396_1 22 ALDLLELQSDDVVYDIGCGDGRFVVEAALRSGAH-CVGIEIEEKRAEEARQRVK 74
                 577899**************************99.**********999987655 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.7e-08   2.1e-05       1      73 [.      34     103 ..      34     130 .. 0.65

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 3.7e-08
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpfeegefdlvvc 73 
                  + d+GCG Gr + +++  l++g  ++++g++i+e++ e+a++r+++ ++   v+  ++ a  +++ + e  +v++
  MMETSP0890-20130614|16396_1  34 VYDIGCGDGRFVVEAA--LRSG--AHCVGIEIEEKRAEEARQRVKKANVedLVQIRCENALTMSTLS-EATAVYL 103
                  67*******8666665..4456..9*******************87775554555555555555443.4444443 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.1e-08   2.9e-05      61     127 ..      18      82 ..      10      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.1e-08
                  HHHHHHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEE CS
   PF01135.14  61 mvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvi 127
                   v lal+llel+  + v ++G+G G    v+   +++ ++ v+ie  ++ +eea++++kk ++e+++
  MMETSP0890-20130614|16396_1  18 AVDLALDLLELQSDDVVYDIGCGDGRF--VVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEDLV 82 
                  46789********************76..555666666677********************999543 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.9e-07   0.00033      12      66 ..      21      75 ..      10     127 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.9e-07
    PF13489.1 12 llerllarlkpggrvLDiGcGtGillell.aengfdvtgvDpspaaigkakqaqks 66
                 l   ll+ l+ +  v DiGcG+G+++ +   ++g++++g+++ +   ++a+q +k+
  MMETSP0890-20130614|16396_1 21 LALDLLE-LQSDDVVYDIGCGDGRFVVEAaLRSGAHCVGIEIEEKRAEEARQRVKK 75
                 4445554.889999*********9988884566*********77666654444443 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.2e-07   0.00047      22      92 ..      21      91 ..      12     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.2e-07
                 HHHHHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-STTT CS
    PF05175.9 22 lLletlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdlle 92
                 l l+ l+ + ++ v D+GcG G   +++a +s   + + ++i+++  e a++ +++ ++e+ v+++ +++l 
  MMETSP0890-20130614|16396_1 21 LALDLLELQSDDVVYDIGCGDGRFVVEAALRSGA-HCVGIEIEEKRAEEARQRVKKANVEDlVQIRCENALT 91
                 55677777788899***************99988.8999**********************99999998775 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     1e-06   0.00058       2      57 ..      36      90 ..      35     106 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1e-06
    PF08242.7  2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnleald 57
                 +iGcG+G+++ + + + ++++ +g++i ++  e+a+++++k + ++  +++ e+  
  MMETSP0890-20130614|16396_1 36 DIGCGDGRFVVEAALR-SGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCENAL 90
                 9*******99988888.9***********************999888888877665 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06   0.00096      20      92 ..      20      96 ..      14     139 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.7e-06
   PF00398.15 20 neIldklnlqekdtvlEigpGkGalTeeLakra.kqvvalEidsklvkrlqkkla...kdenvevvhqDflkfstpe 92
                 + +ld l+lq +d v++ig G+G + +e a r   + v +Ei +k ++  +++++    ++ v++  +++l++st +
  MMETSP0890-20130614|16396_1 20 DLALDLLELQSDDVVYDIGCGDGRFVVEAALRSgAHCVGIEIEEKRAEEARQRVKkanVEDLVQIRCENALTMSTLS 96
                 668999***********************9999788999*************9995555556666666666666655 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.9e-06    0.0039      24      84 ..      29      81 ..      16     131 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.9e-06
    PF13679.1 24 egsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnksl 84
                 +++  v D+G+G g     +a      + + + vgi+++e+ +e+a+++ +k +  + ++l
  MMETSP0890-20130614|16396_1 29 QSDDVVYDIGCGDGRFVVEAAL-----RSGAHCVGIEIEEKRAEEARQRVKKAN--V-EDL 81
                 5667899*******87777777.....7899******************99988..5.333 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.7e-06    0.0055     189     229 ..      28      69 ..      14      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.7e-06
                  S----EEEETT-----.HHHHHHH---EEEEEESSTTHHHHH CS
   PF01555.13 189 tkkgdivlDpFaGSGt.TavaakelgrkfiGieieeeyvela 229
                  ++ +d+v D  +G G   ++aa++ g +++Gieiee+++e a
  MMETSP0890-20130614|16396_1  28 LQSDDVVYDIGCGDGRfVVEAALRSGAHCVGIEIEEKRAEEA 69 
                  5679***********9456788999************99977 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.1e-06    0.0052     145     220 ..      16      89 ..      14     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.1e-06
    PF06325.8 145 HpTTklclealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevallke 220
                  H+   l+l +le  +++++ v D+G+G G   + aa+   ++ v++ i+e   + a++ +++ +ve+ +++  ++ 
  MMETSP0890-20130614|16396_1  16 HEAVDLALDLLE--LQSDDVVYDIGCGDGRFVVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCENA 89 
                  777777788887..67888999***********99999999**************************888765443 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.6e-05     0.043      46     114 ..      34     101 ..      24     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.6e-05
   PF03602.10  46 vLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkkee 114
                  v D+ +G G   +EA+ R  +++v +e ++k ++  ++ +++ ++e+   ++r ++a  +++l++++++
  MMETSP0890-20130614|16396_1  34 VYDIGCGDGRFVVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVED-LVQIRCENALTMSTLSEATAV 101
                  668889**************************************997.899999989888888766544 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011     0.062      13      55 ..      30      72 ..      19     100 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
    PF07021.7 13 pgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvak 55
                 +   v d+GcGdG ++   + + + +  G+e++e+   e+ ++
  MMETSP0890-20130614|16396_1 30 SDDVVYDIGCGDGRFVVEAALRSGAHCVGIEIEEKRAEEARQR 72
                 455799********9988888899**********999998887 PP

>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011     0.065      95     165 ..      23      91 ..      16     132 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
    PF08704.5  95 iskLevkpGsvvvesGtGsgslshaiartvaPtGhlytfefheqRaekareeFrehelsslvtvthrdvck 165
                  +  Le++   vv + G G g +   +  ++    h   +e++e+Rae+ar+  ++ ++++lv+++  ++ +
  MMETSP0890-20130614|16396_1  23 LDLLELQSDDVVYDIGCGDGRFV--VEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCENALT 91 
                  56789999999999999999864..5567778889***************************999777654 PP

>> PF12147.3  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016     0.092     127     207 ..      23      99 ..      14     120 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00016
    PF12147.3 127 iarlkakgkpvrildiaaGhGryvldalekaeervesilLrdyselnveqGraliaekglediarfekgdafdeeslaale 207
                  +  l+ + ++v + di +G Gr+v++a  ++ ++   i +    e   e+ r+ +++ ++ed+++++  +a+   +l+  +
  MMETSP0890-20130614|16396_1  23 LDLLELQSDDV-VYDIGCGDGRFVVEAALRSGAHCVGIEI---EEKRAEEARQRVKKANVEDLVQIRCENALTMSTLSEAT 99 
                  44455554444.89************99888887777766...57788999999************999999988887655 PP

>> PF02384.11  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018       0.1      31      65 ..      15      49 ..      12      94 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00018
   PF02384.11 31 PkevsklivellepkegesiyDpacGsggllvqae 65
                 P+e + l  +lle +++ ++yD  cG g + v+a+
  MMETSP0890-20130614|16396_1 15 PHEAVDLALDLLELQSDDVVYDIGCGDGRFVVEAA 49
                 89999**************************9986 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.11      49     109 ..      34      92 ..      11     101 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
   PF01596.12  49 vleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagvedkielilgdalkv 109
                  v +iG   G    ++  al  + + + i+i+e+ ae +++ ++ka ved ++++  +al++
  MMETSP0890-20130614|16396_1  34 VYDIGCGDGR--FVVEAALRSGAHCVGIEIEEKRAEEARQRVKKANVEDLVQIRCENALTM 92 
                  5555554443..3444567788999*****************************9999764 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00032      0.18       3      60 ..      37      91 ..      35     110 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00032
    PF13578.1  3 iGvysGvstlvllqalkrngagrlysvdpdpg.aeeaaalaeeagladrvrllkgdsee 60
                 iG  +G    ++++a+ r+ga ++++++ +++ aeea++ +++a+++d v++ +++++ 
  MMETSP0890-20130614|16396_1 37 IG--CGDGR-FVVEAALRSGA-HCVGIEIEEKrAEEARQRVKKANVEDLVQIRCENALT 91
                 78..55544.44556666665.9******9987888999999*********99988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 587.91
//
Query:       MMETSP0890-20130614|16424_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        71  (0.0051931); expected 273.4 (0.02)
Passed bias filter:                       70  (0.00511995); expected 273.4 (0.02)
Passed Vit filter:                         0  (0); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.65
# Mc/sec: 110.60
//
Query:       MMETSP0890-20130614|16519_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 197.96
//
Query:       MMETSP0890-20130614|16554_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-24   85.7   0.1    2.3e-24   85.4   0.0    1.1  1  PF13306.1 Leucine rich repeats (6 copies)
    9.3e-14   50.8   0.1    6.8e-06   25.6   0.0    2.6  3  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   3.3e-28   2.3e-24      24     112 ..       2      91 ..       1     103 [. 0.57

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 3.3e-28
    PF13306.1  24 tsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinipsslttigssaFsnc.slksitips 112
                  t Ig +aF++c+sl+++tlp  lt+ig  aF +c+sl+++ ++  lt+ig+ aF++c+sl ++++p s+t+i+ saF +c +  +i i+s
  MMETSP0890-20130614|16554_1   2 TMIGIEAFRDCTSLTKVTLPAGLTKIGAAAFHDCTSLNQFILHAGLTTIGNLAFRGCTSLMQLTLPDSITYISGSAFDGCrNDMTIAITS 91 
                  456666666666666666666666666666666666666666666666666666666666666666666666666666664444444433 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.6e-06     0.038      14      56 ..       2      43 ..       1      46 [. 0.73
   2 !   25.6   0.0   9.9e-10   6.8e-06       2      56 ..      14      66 ..      13      68 .. 0.96
   3 !   19.5   0.0     8e-08   0.00055      13      50 ..      47      83 ..      41      83 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.6e-06
    PF13855.1 14 kvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 + i+ +aF ++++L++  L    l+ i + af++++sL +  L
  MMETSP0890-20130614|16554_1  2 TMIGIEAFRDCTSLTKVTLP-AGLTKIGAAAFHDCTSLNQFIL 43
                 66777788888888888888.8888888888888888877766 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 9.9e-10
    PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 +L+++ L    l++i+  aF+++++L  + L+   l++i   af g++sL +L L
  MMETSP0890-20130614|16554_1 14 SLTKVTLPAG-LTKIGAAAFHDCTSLNQFILH-AGLTTIGNLAFRGCTSLMQLTL 66
                 8999******.*********************.******************9998 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 8e-08
    PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLps 50
                 l++i++ aF g+++L+ L L  ++++ is  af+g+++
  MMETSP0890-20130614|16554_1 47 LTTIGNLAFRGCTSLMQLTLP-DSITYISGSAFDGCRN 83
                 99*******************.**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.51
# Mc/sec: 493.37
//
Query:       MMETSP0890-20130614|16581_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    9.5   8.1       0.21    9.5   5.6    1.0  1  PF05557.8 Mitotic checkpoint protein
        3.1    7.6   7.2        3.4    7.5   5.0    1.1  1  PF09871.4 Uncharacterized protein conserved in archaea (DUF2098)


Domain annotation for each model (and alignments):
>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.6   3.1e-05      0.21     142     186 ..       4      47 ..       1      53 [. 0.89

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.1e-05
    PF05557.8 142 kkldaekkklqkekedqlkeakesisviknelselqlkaqnadle 186
                   kl+++kkk  +ek+++   a e+++ i n +++++   q+a+ e
  MMETSP0890-20130614|16581_1   4 LKLEEKKKKA-NEKKEKEDAAAEKHLQITNMAKKMKDAEQDAESE 47 
                  6899999999.9************************888888765 PP

>> PF09871.4  Uncharacterized protein conserved in archaea (DUF2098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.0    0.0005       3.4      46      87 ..       6      47 ..       1      51 [. 0.64

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0005
    PF09871.4 46 Levvdkkkekkeeeeedkeelierikkeeeeleevdleseea 87
                 Le   kk+++k+e+e+ ++e+  +i+++ +++++++ ++e +
  MMETSP0890-20130614|16581_1  6 LEEKKKKANEKKEKEDAAAEKHLQITNMAKKMKDAEQDAESE 47
                 333334555555666666777778889999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2089  (0.152794); expected 273.4 (0.02)
Passed bias filter:                     1190  (0.0870392); expected 273.4 (0.02)
Passed Vit filter:                       137  (0.0100205); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.50s 00:00:00.90 Elapsed: 00:00:00.76
# Mc/sec: 170.27
//
Query:       MMETSP0890-20130614|16590_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-11   43.1   0.2    4.2e-11   42.3   0.1    1.3  1  PF03932.9 CutC family


Domain annotation for each model (and alignments):
>> PF03932.9  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.1     3e-15   4.2e-11       5     175 ..      68     239 ..      63     244 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 3e-15
                  EEESSHHHHHHHHH----EEEE-S-TT----------HHHHHHH--S-EEEB--------------HHHHHHHHHHHHH------EE--B----.-B-HHHHHHHHHH------EE-.GGGGGSS-...HHHHHHHHHH..----EEE-----SSST---HHHHHHHHSSSSSE.EEE CS
    PF03932.9   5 vcvenlesllaaqaagadRvELCaalavgGltPslgvlkeaaeeakipvyvmiRPRgGdFvysdeelkamleDieaarelgldgvvlGaltadg.eiDlkaleklieaaegLgvtfH.rAfDvvad...peealeqlie..lgvervLtsGqkssalegleklaeLveqaaerieima 175
                  v++e    +l a+++ga+R+EL  + a g +  ++++l++       p+   +   gGd + +     a++ D++ a++lg+ gv+lGal+a+  ++D + le+l++ a+++ v+f  +Af+   +   + ++l+q  +    ++ ++  G  +  ++ l+ l++ ++ a +ri+i+a
  MMETSP0890-20130614|16590_1  68 VAIECASAALRAIEGGAKRLELYTNSA-GEIRATAALLRQYK----NPAELYVHLNGGDSLNEIAK-MALRVDLAFAKSLGARGVILGALEAKThHLDADFLEQLVKIAKPMKVAFSaQAFEALLEangQYSTLDQRSRrlSALDSLIDLGVTTIYIQDLHALQDTIDLARGRISIVA 239
                  44678889999***********98854.67888888887766....45555566689**8865555.47899******************987527*******************964799987665558899999765324678889999999999*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.94
# Mc/sec: 874.42
//
Query:       MMETSP0890-20130614|16609_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.017   14.7   0.0    1.3  1  PF06743.10 FAST kinase-like protein, subdomain 1
       0.03   14.3   0.5      0.034   14.2   0.4    1.1  1  PF06946.6  Phage holin


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-06     0.017      20      51 ..       3      34 ..       1      52 [. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.4e-06
   PF06743.10 20 effeklasalereLdsispelllnlvwSlcll 51
                 ++f+++a a  ++Ld+++p+ l n+ w+++ +
  MMETSP0890-20130614|16609_1  3 ALFNAIAAAALSKLDGSDPQGLANTIWAFATA 34
                 799**************************975 PP

>> PF06946.6  Phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   4.9e-06     0.034      42      83 ..       4      47 ..       2      55 .] 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.9e-06
    PF06946.6 42 lvgailgalatsldgsg..slatmiwagalagaggtglfeqftn 83
                 l  ai  a  + ldgs    la  iwa a a    + lf  +++
  MMETSP0890-20130614|16609_1  4 LFNAIAAAALSKLDGSDpqGLANTIWAFATASVEASALFYAIAD 47
                 667999999999***963379****************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 223.39
//
Query:       MMETSP0890-20130614|16614_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   13.4   1.8       0.15   11.7   0.2    2.6  3  PF07713.8  Protein of unknown function (DUF1604)
       0.12   12.2   4.1       0.19   11.6   1.1    2.6  2  PF01091.13 PTN/MK heparin-binding protein family, C-terminal domain
        1.4    9.1   5.3        1.3    9.2   1.3    2.6  3  PF11689.3  Protein of unknown function (DUF3286)


Domain annotation for each model (and alignments):
>> PF07713.8  Protein of unknown function (DUF1604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   3.4e-05      0.15      14      63 ..      71     120 ..      59     144 .. 0.79
   2 ?   -1.2   0.0      0.35   1.6e+03      31      41 ..     221     231 ..     219     267 .. 0.82
   3 ?   -1.7   0.0       0.5   2.3e+03      53      80 ..     302     328 ..     286     333 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.4e-05
    PF07713.8  14 ekgrrRfhGAftGGfsaGyfntvGskeGwtpktfkssreerakekkqrae 63 
                  + + +R++  f  G   G+f tv+s    t+ + k s++++a+++ ++++
  MMETSP0890-20130614|16614_1  71 KGEAKRMKKQFGSGLKKGFFTTVDSSSSSTKLKKKISQKKKATTNVETIS 120
                  34569**************************9999999999998755543 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.35
    PF07713.8  31 GyfntvGskeG 41 
                  G+fn +G+k+ 
  MMETSP0890-20130614|16614_1 221 GHFNEIGTKDE 231
                  89999999875 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.5
    PF07713.8  53 erakekkqraedfmdeedlkelkeakkl 80 
                  +++ + +q+ +d + +e+++   ++ +l
  MMETSP0890-20130614|16614_1 302 NKK-RGQQSDNDGVTQEQVNAILNDDNL 328
                  222.335666666666666655555555 PP

>> PF01091.13  PTN/MK heparin-binding protein family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   4.1e-05      0.19      15      57 ..      97     139 ..      85     144 .. 0.91
   2 ?   -1.2   0.0      0.41   1.9e+03      33      48 ..     264     279 ..     259     292 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.1e-05
   PF01091.13  15 daktgtktRtgtLkkalynaeCqetvtvsKpCkkktksKakak 57 
                  +++t +k ++ + kka  n e  +t +++K+ +  ++sK+ a+
  MMETSP0890-20130614|16614_1  97 SSSTKLKKKISQKKKATTNVETISTSRIQKKSGDSVQSKMTAE 139
                  5689999********************************9875 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.41
   PF01091.13  33 naeCqetvtvsKpCkk 48 
                  +a C +t+t+  p k+
  MMETSP0890-20130614|16614_1 264 DATCLSTRTLPSPQKN 279
                  7899999998776554 PP

>> PF11689.3  Protein of unknown function (DUF3286)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.3   0.00028       1.3       1      41 [.      77     119 ..      76     151 .. 0.78
   2 ?   -1.2   0.0      0.51   2.3e+03      11      51 ..     222     262 ..     218     266 .. 0.61
   3 ?   -2.2   0.0         1   4.7e+03      25      42 ..     278     296 ..     255     305 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00028
    PF11689.3   1 mdrr..SrlKkahfssvptrmslFtckkyvfliekkfsepsls 41 
                  m+++  S+lKk +f +v++  s   +kk +   +k  ++  + 
  MMETSP0890-20130614|16614_1  77 MKKQfgSGLKKGFFTTVDSSSSSTKLKKKISQKKKATTNVETI 119
                  667778****************999999999988877766543 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.51
    PF11689.3  11 hfssvptrmslFtckkyvfliekkfsepsls...PkqKigkTQh 51 
                  hf+ + t+     +k+y   iek+  ++++     ++K++  Q 
  MMETSP0890-20130614|16614_1 222 HFNEIGTKDE--QMKRYA-AIEKELGPLAAQiaeKHDKENESQV 262
                  5555555555..455554.5666666666543346788888775 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1
    PF11689.3  25 kkyvfliekkfsepsls.P 42 
                  k   f+ +k++ +  +s P
  MMETSP0890-20130614|16614_1 278 KNTEFSNRKEYKPNGPSsP 296
                  4456778888866555534 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1143  (0.0836015); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.67
# Mc/sec: 1334.09
//
Query:       MMETSP0890-20130614|16648_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-12   45.3   3.9    3.9e-11   43.1   2.7    1.8  1  PF12697.2  Alpha/beta hydrolase family
    2.7e-05   23.8   0.1    0.00014   21.5   0.0    2.2  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.016   14.6   0.2       0.17   11.3   0.2    2.3  1  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   2.7   8.5e-15   3.9e-11      21     218 ..      65     384 ..      44     394 .. 0.67

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 8.5e-15
                  HTT.TSEEEEE---------...............--S...S--H...............HHHHHHHHHHHHH--.--EEEE--------HHHHHH----...EEEEEEE------STT....................................................................................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-...EEEEE-----HHHHHHHHHHHHHST.TEEEEE---SSSS-. CS
    PF12697.2  21 Laa.gyrvvapDlpGhGrSd...............rppdydpdtl...............edlaadlaalldalglrpvvlvGHSlGgavalaaaarrpd..lvrglvlidppgplpas....................................................................................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvP...vlviageaDrvvppeearrlaealp.garvvvlpgagHllf 218
                   ++ g r +a+D+p+ G+++                        +               +++  d+aa+l+++g+    ++G + G+  al++ a + +    ++l l+ p+++ ++                                                                                                      l+    ++ ++l++  +++l+   +++  +++ +   ++ v a +a +  +l++  ld+ l + l   d+P   ++++a+++D++vpp +ar++a++lp ++ + v+  a+H + 
  MMETSP0890-20130614|16648_1  65 ARKlGLRLIAVDRPNIGGTSgcgdeaevidddpsdS--------WglnkskrsrtvskrlRTHSNDVAAVLRHIGASNTRVIGICAGTPFALHFIATQAGlaSTSHLTLVTPWVQPYDCeyawslarvasrrwilgrsfagyllsslqlgvampmlrsldpgellalldgkltdkerlelqatrarqaadilvatrtspsscrattssleqqfssaglgILE----THNDELVQDLERRLELALGAKALEYMGENAQAHCVSAMTADVRVCLSS--LDEVL-QGLDLKDLPidsTTLLAADDDELVPPKAARWFADRLPgHVGLFVFHRASHAGV 384
                  22369*************994444444444433330........333444444444444488888******************************999985666999*******777769999999998888888888888888888888888877777777777777777777777777777666666666666666666666666666655554333222....333333334444444444555555555444444444444444444444..44444.4444444443358***********************85799*********965 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.1e-08   0.00014      23     142 .]      66     382 ..      44     382 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.1e-08
    PF12695.2  23 akrgfavvavdlpghgasegaaaakrvl................................aadll...dleriilvGhSlGGgvalelag.........................................................................................................................................................rddrvkglvllapfpdgedlakltl...................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                   k g++ +avd p  g ++g  + ++v+                                +   l   ++++  ++G ++G+ +al++ +                                                                                                                                                         +                                                            + l+ +++D++vpp++a+ +a++lpg++ l+v++ asH+
  MMETSP0890-20130614|16648_1  66 RKLGLRLIAVDRPNIGGTSGCGDEAEVIdddpsdswglnkskrsrtvskrlrthsndvaaV---LrhiGASNTRVIGICAGTPFALHFIAtqaglastshltlvtpwvqpydceyawslarvasrrwilgrsfagyllsslqlgvampmlrsldpgellalldgkltdkerlelqatrarqaadilvatrtspsscrattssleqqfssaglgilethndelvqdlerrlelalgakaleymgE-----------------------NaqahcvsamtadvrvclssldevlqgldlkdlpidSTTLLAADDDELVPPKAARWFADRLPGHVGLFVFHRASHA 382
                  5556666666666655554444444444444444444444444444444444444442221...133477788888888888888888887888888888888888888888888888888888888888888877777778899999999999999999999999999999888877777766666666666666666666666666666666666666666666555555555555544441.......................033333333333444444444444444444666669999999*********************************5 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.7e-05      0.17      20      80 ..     109     195 ..      71     384 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
                  S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGG..GEEEEEEESB--........................H CS
   PF00561.15  20 pelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypd..rvkamvllgtva........................v 80 
                  + + + + + + +d+ avl++ g  +  ++G + G+ +al++ a      + ++++l+ ++                          
  MMETSP0890-20130614|16648_1 109 SRTVSKRLRTHSNDVAAVLRHIGASNTRVIGICAGTPFALHFIATQAGlaSTSHLTLVTPWVqpydceyawslarvasrrwilgrsF 195
                  55555678999******************************9998887788888888888766655555555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.99
# Mc/sec: 1229.65
//
Query:       MMETSP0890-20130614|16668_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1402.19
//
Query:       MMETSP0890-20130614|16670_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-44  151.1   0.0    2.7e-44  150.4   0.0    1.2  1  PF02099.12 Josephin


Domain annotation for each model (and alignments):
>> PF02099.12  Josephin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0     2e-48   2.7e-44       2     157 ..      48     200 ..      47     201 .. 0.93

  Alignments for each domain:
  == domain 1    score: 150.4 bits;  conditional E-value: 2e-48
   PF02099.12   2 qelqlCalHclNnllQkeafteaeLaeiAkeLdqkernkleeesatpksllakeshNvsetGnfsvqVlekaLevkklkvipl.kskevkassidpeaeaafilnlseHWvaiRkingeWynLdSllaapefidkeylsafLdqlksegvsvfvvkk 157
                  q + lCa+H+lNnl+Q+  f+e++La+iA eLd++er +l  e  +   +    s+Nv  +G+fsvqV+  aL++ ++ + ++ ++k+ +++ + p++e +filn++eHW+a+Rk+ geW++L+S++aap++++   l  f+++ +  g+s+fvv++
  MMETSP0890-20130614|16670_1  48 QIGALCAVHALNNLMQERRFDEVQLASIAMELDEAERVTLGGERLAGEHA----SENVRADGFFSVQVVVLALQRVGVMCSQIsADKSSESYVSIPARESGFILNRREHWFALRKVGGEWFDLNSMFAAPKHMSAMTLDSFFKEQQALGYSIFVVRG 200
                  7788***********************************99877776666....9**************************99345555666669************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 1033.02
//
Query:       MMETSP0890-20130614|16672_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   13.3   0.0        0.2   11.7   0.0    1.8  1  PF11488.3 Transcriptional regulatory protein LGE1
      0.072   12.4   0.0       0.17   11.2   0.0    1.6  1  PF10635.4 DisA bacterial checkpoint controller linker region


Domain annotation for each model (and alignments):
>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     3e-05       0.2      20      63 ..     160     203 ..     154     212 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3e-05
    PF11488.3  20 ttveklrsrvkelesldkeleelksqklklelelalletqvdrd 63 
                  t++++++  ++ l++++ el++l +q+l +e e+++l+ +++r+
  MMETSP0890-20130614|16672_1 160 TEEPEVHCNFSGLTAITTELDDLTAQYLDRESEYESLNYKYARL 203
                  67888999999**************************9999886 PP

>> PF10635.4  DisA bacterial checkpoint controller linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05      0.17      55     132 ..      72     147 ..      59     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
    PF10635.4  55 mvlrikeeieryvveLGteGrlislqLeellkdveeeeellirDYa..kkeekdveevleeleelsseelldlsaiakvL 132
                  +v +i++ i ++ +  G + r + +q ++++++    + + i DY+   +++ + ++v ++l+++ +e+   ls  + +L
  MMETSP0890-20130614|16672_1  72 IVSEIASTIFNCSCTCGLDNRNVAIQYNDITSK----YASTIADYVeaISDTISFHDVPDTLQQIIDEHEDHLSMPLLLL 147
                  7899**********************9887765....7889*****888999999*********9988876666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.92
# Mc/sec: 1057.52
//
Query:       MMETSP0890-20130614|16674_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-50  169.5   0.1    9.7e-38  130.1   0.0    2.0  2  PF00656.17 Caspase domain
  ------ inclusion threshold ------
       0.14   10.1   0.0        0.2    9.6   0.0    1.1  1  PF06248.8  Centromere/kinetochore Zw10


Domain annotation for each model (and alignments):
>> PF00656.17  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.5e-13   1.7e-09     153     244 ..      21     113 ..       5     117 .. 0.87
   2 !  130.1   0.0   1.4e-41   9.7e-38       2     143 ..     131     287 ..     130     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.5e-13
                  ----SS--CEE--TTTSEEEEESSSTEE-CCEC...........TT---HHHHHHHHHHHHHTTTH.HHTTTSBHHHHHHHHHHHHHTSC---EEEEEE- CS
   PF00656.17 153 ereeegagsskgplpadgillsgcqtdqtSada...ag.....kteaggaftqalqqvlketnekgeitnkelvlnarltlvkqkvaqkkqrPglscsdl 244
                     ee++++++ +l+ +++++sgc++ qtSad+   a       ++agga t al++ ++e      +++ + + + r++l+ +++   +q P+ls+s +
  MMETSP0890-20130614|16674_1  21 VAPEEYDSKAQEALKGEIMMFSGCADSQTSADVhdvASfglpdAEGAGGACTHALLKSISEG----AESYVDILKEMRQILKTKRF---TQLPQLSASRR 113
                  5678999**************************9872256899****************555....456999999999********...******99976 PP

  == domain 2    score: 130.1 bits;  conditional E-value: 1.4e-41
                  EEEEEE----SST------HHHHHHHHHHH.HHTT-EEEE.......EES.....--HHHHHHHHHHHHTCSGTBS-EEEEEEE----...B----BE-SSSE-B-HHH.......HHHTTSTTT-GGGTTS-E.EEEEES---EETB---EEE-S-- CS
   PF00656.17   2 kAllIginyfgtkaeLrGcvnDvermaklL.krlgFeveni.....lidd.....ptgknirkalkelvksaksgDvlvvhysGHGtrvpaegededtgydecivpvdkn....lildddfrdlvckslpekpk.tiilDaChsgglideakeqiges 143
                  kAllIginy g++ eL Gc+ Dv  ++  L +  gF+  +      l dd     pt++ni + +++l+ +a++gD+l + ysGHG +vp++++ded+  de++vpvd +    +  d +f +lv++ +p++++ t+++DaChsg+++d+++  + ++
  MMETSP0890-20130614|16674_1 131 KALLIGINYVGQQGELGGCHHDVVGFKTYLtEVVGFDFNDAsrykiLMDDgehemPTAQNIVDGFRWLIDDAQPGDSLWFSYSGHGGSVPDDDDDEDDNLDETLVPVDYQtagqIRDDTIFAKLVAP-VPSGVRlTVVIDACHSGTVLDLPYIFNASD 287
                  8*****************************9999******998888777799999**********************************************************88888899999999.**********************99887765 PP

>> PF06248.8  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0     3e-05       0.2     429     512 ..      18     110 ..       4     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3e-05
    PF06248.8 429 e.....eelkseneetlsestfsfptCrvSeSvqkLmkLlektLseattsseqaavqLfytvrnilelYvdvVPtyhk....klLkklPqlsa 512
                  e     ee  s+++e l  + ++f+ C  S++  +  + +   L +a+ +   +   L +++ +  e Yvd   +  +    k + +lPqlsa
  MMETSP0890-20130614|16674_1  18 EgkvapEEYDSKAQEALKGEIMMFSGCADSQTSADVHDVASFGLPDAEGAGGACTHALLKSISEGAESYVDILKEMRQilktKRFTQLPQLSA 110
                  1344568999999*********************************************************97766543333499*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.73
# Mc/sec: 1145.66
//
Query:       MMETSP0890-20130614|16671_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-24   84.5   0.8    7.5e-24   84.0   0.5    1.2  1  PF02469.17 Fasciclin domain
  ------ inclusion threshold ------
      0.017   14.7   0.4      0.062   12.9   0.1    2.2  2  PF12575.3  Protein of unknown function (DUF3753)


Domain annotation for each model (and alignments):
>> PF02469.17  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.5   1.1e-27   7.5e-24       5     125 .]      56     180 ..      52     180 .. 0.94

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 1.1e-27
                  HHHHHHHTT-HCHHHGHTSSCEEEEEE-HHHHHHHHHCHCHCCHCGHHHHHHHHHCTEECCSS-HHHHHHHHHEEB.CCC-EEEEEEE---EEEEEE...EEEEEEEEE------EEEESS-S-- CS
   PF02469.17   5 tfvsllekaglaeeLnkkqgglTvFaPtneAfaklppetlafllkdkkklkaiLkyHvvpetvsssdlkkaeqlat.legaklrvnikgngtvtvng...karvvrsdieatngvihvidkvLlp 125
                  +f++l+++a +++  ++++ +lTvFaP+n A+++lp + l+  l++ ++l+++L+yH +++t++ss+l+++  l+t  + + +++n+++n+ v v +   +a++++++ +atng++h+id+vLlp
  MMETSP0890-20130614|16671_1  56 SFTALVTSAVIQSVYTNEDASLTVFAPSNVAIDALPDGVLRYYLANIDQLANVLLYHTINGTITSSELTDGLVLTTkYQETIISINRSSNNFVLVSEngeTANITTRNLQATNGILHIIDSVLLP 180
                  68999999999999999999********************************************************99**********77777777789************************98 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.52   3.6e+03       4      16 ..     110     122 ..     110     125 .. 0.85
   2 ?   12.9   0.1   9.1e-06     0.062      34      68 ..     185     222 ..     156     225 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.52
    PF12575.3   4 LyaaifGvflsss 16 
                  Ly +i G++ ss+
  MMETSP0890-20130614|16671_1 110 LYHTINGTITSSE 122
                  899*****99986 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 9.1e-06
    PF12575.3  34 kkklkkkkensssniiiliiliiivvivvll...vfly 68 
                  +++ ++ k++++  + +lii++ii+++  ++   +fly
  MMETSP0890-20130614|16671_1 185 SDDGYTDKSKKKGDSRTLIIVVIIALLFSVFvcaLFLY 222
                  44455555555555556666666666665554333555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      617  (0.0451287); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.94
# Mc/sec: 652.62
//
Query:       MMETSP0890-20130614|16675_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-29  100.4   0.0    5.6e-28   97.5   0.0    2.1  1  PF02786.12 Carbamoyl-phosphate synthase L chain, ATP binding domain
    2.7e-19   69.0   0.1    4.6e-19   68.2   0.0    1.4  1  PF02787.14 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
    1.1e-18   67.5   0.0    3.3e-18   65.9   0.0    1.9  2  PF13535.1  ATP-grasp domain
    2.2e-18   66.2   0.0    6.5e-18   64.7   0.0    1.8  1  PF00289.17 Carbamoyl-phosphate synthase L chain, N-terminal domain
    1.4e-16   60.0   0.0    2.6e-16   59.2   0.0    1.5  1  PF02142.17 MGS-like domain
    2.4e-10   39.9   0.0    4.2e-10   39.1   0.0    1.3  1  PF02222.17 ATP-grasp domain
    3.4e-07   29.8   0.0    6.7e-07   28.8   0.0    1.4  1  PF08443.6  RimK-like ATP-grasp domain
    1.2e-05   24.6   0.0    1.8e-05   24.0   0.0    1.2  1  PF07478.8  D-ala D-ala ligase C-terminus
     0.0065   15.9   0.0       0.01   15.2   0.0    1.3  1  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain


Domain annotation for each model (and alignments):
>> PF02786.12  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   3.7e-31   5.6e-28       1     208 [.     202     419 ..     202     422 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 3.7e-31
                  SHHHHHHHHHH---BB---B-B..SSHHHHHHHHHH----EEEEETT-------EEESSHCCHHHHHHHHHHHCCHHHSTS-EEEEE--SS-EEEEEEEEE-TTS-EEEEEEEEECCEE..TTEEEEEEES--S--HHHHHHHHHHHHHHHHH-------EEEEEE-...............TT---EEEEEEESS--TTHHHHHHH----HHHHHHHHH----C CS
   PF02786.12   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvardeeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflld...............pkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekL 208
                  D+++++++++k++v+  + ++   e++e a+++ak++gyPv++++++ l G  m v+rde+ l + ++ka + +k    ++ v v k+++g +e+Ev+ ++ ++g vi  +  e +     + ++   + P qtL++ + q+ r a+ +++++++++g  +v+fl+                ++ +   viE N R s++ +  +k TG+d + +a ++ +g++ 
  MMETSP0890-20130614|16675_1 202 DRSKFSALMDKAGVKQPRWAEL--ESEEAAITFAKSVGYPVLVRPSYVLSGAAMAVCRDEQGLLDHLHKAKDVSK----EHPVVVSKFVRGARELEVDAVA-KDGQVICAALHEHIEDAgvHSGDATLMLPPQTLSAYALQRARDATREIAKSLQISGPLNVQFLIGgregppgsneldgsfESMNAVRVIECNLRASRSVPFVSKSTGVDFADVATRVLAGYPV 419
                  9***************999999..**************************************************7....9******************998.5688888888888877778********************************************962222221111111111234578*******************************99975 PP

>> PF02787.14  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0     3e-22   4.6e-19      60     121 .]       2      63 ..       1      63 [. 0.97

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 3e-22
   PF02787.14  60 eellreaKklGfsDaqiakllgvteeevrklrkelgikpvykrvDtcAaeFeaktpylYsty 121
                  +e++ ++KklGfsD+qia  +++te +vr  r +lg+ p +k++Dt+A+eF+a t+ylY+ty
  MMETSP0890-20130614|16675_1   2 KEQFLRLKKLGFSDKQIATRCNATETAVRTTRLSLGVEPCVKQIDTLAGEFAAATNYLYTTY 63 
                  578999*******************************************************9 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   2.2e-21   3.3e-18       2     169 ..     200     366 ..     199     394 .. 0.87
   2 ?   -3.0   0.0       3.1   4.8e+03       3      55 ..     587     639 ..     585     646 .. 0.67

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 2.2e-21
    PF13535.1   2 lrdKllmrellaeaglpvprfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyieG.deysvdglvldgelvflgisryletsppdfsdg.aelgsvspseeple..ealrelaerllkalglkngvfHlEfkltpd.Gr 169
                  + d +++ +l+++ag+++pr+a+++see++ ++a+ +g+pv + P++  +     +++d++ l  +l+++++ +   e++++v +++ G +e  vd++  dg+++ +  +++ e+   + +d   +l +++  +      +++r+++++++k+l++  g+ +++f + ++ G+
  MMETSP0890-20130614|16675_1 200 AEDRSKFSALMDKAGVKQPRWAELESEEAAITFAKSVGYPVLVRPSYVLSGAAMAVCRDEQGLLDHLHKAKDVSK--EHPVVVSKFVRGaRELEVDAVAKDGQVICAALHEHIEDAGVHSGDAtLMLPPQT-LSA--YalQRARDATREIAKSLQI-SGPLNVQFLIGGReGP 366
                  678999****************************************************************99999..***********99*************************8888777633333333.333..344****************.*********9999887 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.1
    PF13535.1   3 rdKllmrellaeaglpvprfalvdseedleaaaeeigfpvvlKPadgagslgv 55 
                   d +l r+++a+++++     ++ +  ++  a +++g  + lKPa+ ++ ++ 
  MMETSP0890-20130614|16675_1 587 ADNYLIRRTAADYHIALITNTQLFETLAIALARHNHGDFLALKPASLFHHYKM 639
                  56677777788788876666666666666666777777788888887776655 PP

>> PF00289.17  Carbamoyl-phosphate synthase L chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   4.3e-21   6.5e-18       5     110 .]      89     197 ..      86     197 .. 0.96

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 4.3e-21
   PF00289.17   5 vlianrGei...........avriiralrelgietvavnsnpdtvstdvrladelyflgpaeasesYldveaildiaeke....gvdavhpGygflsenaelaeacekagvkfiGpsaeai 110
                  vl++++G++           av+++ralr  g + +++n+np+tvstd++++d lyf++        l++e++ld++ +e    gv++ ++G+++ +++  l     kag +++G++++ i
  MMETSP0890-20130614|16675_1  89 VLVLGSGPYrigssvefdwcAVSAMRALRAAGARGIMINCNPETVSTDYDECDALYFEE--------LSLERVLDVYDREgvdvGVVVSMGGQIPQNLAVPLD----KAGAHVLGTRPAMI 197
                  9**********************************************************........*************88888999***************....68999999998765 PP

>> PF02142.17  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   1.7e-19   2.6e-16       3      95 .]     516     605 ..     514     605 .. 0.94

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 1.7e-19
                  HHHHHHHHH-GSEEEEEHHHHHHHHHTT---EEECCCCC---B-B..BHHHHHHHHHT-SEEEEE--SCHHHHH.HHHHHHHHHHHTT-EEES CS
   PF02142.17   3 velakklkelgfellATggTaklLkeagipvtevvektgegerlggrvsildlikegeidlvintlypfkatvakdgykirraaenidiplpt 95 
                  ++ a +l elg++l+AT+ Ta++L++  +p+++v+  t+e+++     +  + +k+g + lv+n+ +p +++ a d+y irr+a +++i l+t
  MMETSP0890-20130614|16675_1 516 LAPAYQLYELGYRLYATQNTADYLNQRSVPCEKVAFPTDESTQDA--LDAAEVLKDGSVRLVVNLHSPESQRLA-DNYLIRRTAADYHIALIT 605
                  678999**********************************95444..789***********************9.***************998 PP

>> PF02222.17  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   2.7e-13   4.2e-10       2     143 ..     211     358 ..     209     365 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 2.7e-13
                  HT-------EEEEEHH.HH----------EEEEES-------------------------....---EEEEEE----SEEEEE---B-----B----EEEEEE----....EEEEEEEEE....--HHHHHHHHHHHHHTT-----EEEE CS
   PF02222.17   2 eelglpvprflaveskeeleeaveelglpvvvKarrlgydGkGqsvvkseeeleqaleal....keeklivEefvpfekElsvlvvRsveGevafypvvetvqkdgi....lrlsvapaevsekqqkkaeeiakkiveeLggvGvlavEl 143
                  +++g++ pr++ +es+e++  +++++g+pv+v+ +    +G    v+++e+ l + l+++    ke++++v +fv   +El v +v +++G+v++  ++e++++ g+      l + p+++s+ ++++a + +++i+++L++ G l v +
  MMETSP0890-20130614|16675_1 211 DKAGVKQPRWAELESEEAAITFAKSVGYPVLVR-PSYVLSGAAMAVCRDEQGLLDHLHKAkdvsKEHPVVVSKFVRGARELEVDAV-AKDGQVICAALHEHIEDAGVhsgdATLMLPPQTLSAYALQRARDATREIAKSLQISGPLNVQF 358
                  6899*****************************.99999***********988777776667779****************87666.789************987651111678999****************************99976 PP

>> PF08443.6  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   4.4e-10   6.7e-07       1     105 [.     200     305 ..     200     321 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 4.4e-10
    PF08443.6   1 ardKlkslklLakkkikvpktalarseedaekliekikqfPvvvKsvfgsqGikvvlaedkqsleqlleafkqlkeai..lvQefIeeaenrdiRvlVvgdevvaal 105
                  a+d+ k  +l+ k+++k p++a   see a  +++++ ++Pv+v++++   G  +++++d+q l + l++ k + ++   +v +f+  a + ++  +  +++v+ a 
  MMETSP0890-20130614|16675_1 200 AEDRSKFSALMDKAGVKQPRWAELESEEAAITFAKSV-GYPVLVRPSYVLSGAAMAVCRDEQGLLDHLHKAKDVSKEHpvVVSKFVRGARELEVDAVAKDGQVICAA 305
                  678899999****************************.**************************9999998987654334***********************9763 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08   1.8e-05       1     107 [.     209     315 ..     209     361 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.2e-08
                  HHHH-------EEEE-TT--S--H..HHHHH----EEEEE---------EEESSGGGHHHHHHHHHTT..-SSEEEEE--.---EEEE.--EE---EE------EE---SS CS
    PF07478.8   1 llkaaglpvapfivlekeeakkeklekvveklgypvfvKpareGSSvGiskveseeeleeaieeafqy..dekvlveeai.egreiev.avlgneklevsevgeivlkkgf 107
                  l+++ag++++ ++ le+eea  +    + +++gypv+v+p+   S   ++ +++e+ l + +++a     ++ v+v +++  +re+ev av +++++ +++++e++ + g+
  MMETSP0890-20130614|16675_1 209 LMDKAGVKQPRWAELESEEAAIT----FAKSVGYPVLVRPSYVLSGAAMAVCRDEQGLLDHLHKAKDVskEHPVVVSKFVrGARELEVdAVAKDGQVICAALHEHIEDAGV 315
                  67899999999999998876654....5899*********************************986511567*******889*****77888999999999999988766 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.8e-06      0.01       8     106 ..     208     302 ..     202     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.8e-06
                  HHHHHTT--B--EEEESSHHHHHHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS-----TTSSEEEEE-----.EEEEEEEE----EE CS
   PF01071.14   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGe.Evsvlalvdgktvk 106
                  +l++kag++ ++++++++ e+a ++ ++++ ++  v+++ + +g  + v+++e+  l+++++     k  + +++vv+ ++++G  E+ v a+ +  +v+
  MMETSP0890-20130614|16675_1 208 ALMDKAGVKQPRWAELESEEAAITFAKSVGYPV-LVRPSYVLSGAAMAVCRDEQGLLDHLHKA----KDVSKEHPVVVSKFVRGArELEVDAVAKDGQVI 302
                  69*******************************.9*****************99877766554....4456789*********95488888887655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:01.12
# Mc/sec: 1384.80
//
Query:       MMETSP0890-20130614|16678_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.95
# Mc/sec: 852.60
//
Query:       MMETSP0890-20130614|16673_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-15   55.6   1.2      6e-14   52.1   0.8    2.3  1  PF00059.16 Lectin C-type domain
  ------ inclusion threshold ------
       0.12   12.3   0.5       0.25   11.3   0.3    1.5  1  PF11669.3  WW domain-binding protein 1


Domain annotation for each model (and alignments):
>> PF00059.16  Lectin C-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.8   8.8e-18     6e-14       2     104 ..     153     275 ..     152     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 8.8e-18
                  EEEHHHHH....HHHHHTT-E.BS-HSSHHHHHHHHHHHCH.....CSSEEEESEEESSTTTCEB.............TTT-B-STTCBSTTCSTSSCCTEEEEEEETTTTTSEEEEETTSEEEE CS
   PF00059.16   2 sktweeae....kaCqkegak.Lvsiqseeeqkflkslvkk.....snssaWiGlsdekkegefvw............tdgssveytnwaegepnnkkskedCvelskktegkwndesCesklky 104
                  ++tw++ae      C + + + L+si+seee++f+ +++++     + ++aW+G +d  +eg f+w              g + +y+n+a++epn+++ +edCv++s +  g wnd++C ++l++
  MMETSP0890-20130614|16673_1 153 KMTWHDAEgdawSRCWNGKPGyLISIESEEENNFIFETLRNthgfeQGDRAWLGGTDMMNEGVFQWidgyasgnvfyrPGGGAEHYNNFADNEPNENG-SEDCVSFSGD-VGDWNDDNCYRQLPF 275
                  6788876422227898776666************999998888888999*****************5555444444433334445669******8877.9*********.69*******998876 PP

>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   3.7e-05      0.25      20      52 ..      74     106 ..      63     131 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
    PF11669.3  20 elWyfWlvwvliiilallcayslrrkkrrlqeq 52 
                  +l+ +Wl+w + +i+a++ + +  ++ ++++++
  MMETSP0890-20130614|16673_1  74 HLFALWLLWFITFIIACCAMGKANKNAEKIKND 106
                  4556788888899***99999999888888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.77
# Mc/sec: 877.63
//
Query:       MMETSP0890-20130614|16679_1  [L=1008]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   27.0   0.0    8.4e-06   25.2   0.0    2.0  1  PF05699.9 hAT family dimerisation domain
     0.0078   15.8   0.1      0.024   14.2   0.0    1.8  2  PF13542.1 Helix-turn-helix domain of transposase family ISL3
  ------ inclusion threshold ------
      0.086   12.2   0.6       0.26   10.6   0.4    1.7  1  PF04281.8 Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF05699.9  hAT family dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.9e-09   8.4e-06      19      83 ..     863     927 ..     844     928 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.9e-09
    PF05699.9  19 dvlewwkqnssryPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqw 83 
                   +l++w+++ ++ P+ + +++++L+  +s a+ ErsF  +  +l+ +r+ l+ +  + l+++  +
  MMETSP0890-20130614|16679_1 863 LILNYWHKYIDEVPLFYYVVCKILAGNASEANIERSFKVMRDLLDTRRSNLNVDVRDSLIFTSLN 927
                  59**********************************************************98765 PP

>> PF13542.1  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         2   9.3e+03      13      27 ..     520     534 ..     519     535 .. 0.87
   2 !   14.2   0.0   5.3e-06     0.024      22      61 ..     742     781 ..     736     786 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2
    PF13542.1  13 kmvkkhgkkertvrd 27 
                  ++++k++ k++++++
  MMETSP0890-20130614|16679_1 520 HNFIKNSPKQSKILH 534
                  5699********998 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.3e-06
    PF13542.1  22 ertvrdlplggkpviLrlrkrRyrCkeCgktfteklpfvk 61 
                  e++v+ ++++ k+++L l+k+R +C +++++  +++ +v+
  MMETSP0890-20130614|16679_1 742 ESKVLVIDFAWKQLVLLLQKQRDHCLAHDTVISQHIRAVE 781
                  7899***************************999998886 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   5.6e-05      0.26      36     102 ..     494     562 ..     476     563 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.6e-05
    PF04281.8  36 dtdsdisddsdve.edEtlldRivALkDivppt.tRkkisskvstttslvksglsfaGkllwvvttsaL 102
                    d +++++sdv+ e  ++l R+ A+++ +  + +++ki + ++t++s  +++ ++  ++ w  t s L
  MMETSP0890-20130614|16679_1 494 ADDDEEEEESDVTaESNSFLRRVRAIHNFIKNSpKQSKILHDMQTAMSRPQKSPKVDCETRWWSTHSML 562
                  22333334555555889*************87625568999*****99999999999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:01.22
# Mc/sec: 1979.94
//
Query:       MMETSP0890-20130614|16684_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.0   0.1    2.9e-09   36.2   0.1    1.4  1  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   2.1e-13   2.9e-09       1      41 []       2      42 ..       2      42 .. 0.97

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.1e-13
                 CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41
                 +++nk ++ eaGa+ pLv+L++sg +  +++Aa+AL+NL++
  MMETSP0890-20130614|16684_1  2 NDKNKVTIAEAGAILPLVNLITSGTTIAKKQAAGALRNLSK 42
                 799************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 217.85
//
Query:       MMETSP0890-20130614|16681_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.99    9.0   7.5          3    7.4   0.3    3.1  3  PF01286.13 XPA protein N-terminal
        5.4    6.7  12.1       0.61    9.7   2.1    2.8  3  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
        6.9    6.7   7.9        2.9    7.9   3.1    2.0  2  PF05495.7  CHY zinc finger


Domain annotation for each model (and alignments):
>> PF01286.13  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   4.9e+03       4      11 ..      51      58 ..      50      59 .. 0.79
   2 ?    4.7   0.2    0.0048        22       1      11 [.      85      95 ..      85      98 .. 0.85
   3 ?    7.4   0.3   0.00065         3      23      33 ..     127     137 ..     110     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.1
   PF01286.13  4 eiCeeCgk 11
                 +iC  Cg 
  MMETSP0890-20130614|16681_1 51 QICVMCGN 58
                 58999985 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0048
   PF01286.13  1 qdyeiCeeCgk 11
                 q +++C +C+k
  MMETSP0890-20130614|16681_1 85 QNKDVCRDCDK 95
                 56899*****9 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00065
   PF01286.13  23 dlaVCDaCRDk 33 
                  d a CD+CR++
  MMETSP0890-20130614|16681_1 127 DAAKCDKCRER 137
                  66779999985 PP

>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.45     2e+03      11      21 ..      50      60 ..      44      70 .. 0.72
   2 ?    3.2   0.1     0.015        68      10      25 ..      86     102 ..      81     107 .. 0.77
   3 ?    9.7   2.1   0.00013      0.61      11      36 ..     107     136 ..      98     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.45
                 --B-TTT-SB- CS
   PF00130.17 11 ptfCkhCgkfl 21
                 ++ C  Cg++ 
  MMETSP0890-20130614|16681_1 50 TQICVMCGNLA 60
                 67799998876 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.015
                  S--B-TTT-SB---.-- CS
   PF00130.17  10 qptfCkhCgkflwg.kg 25 
                  ++  C  C+k +w  + 
  MMETSP0890-20130614|16681_1  86 NKDVCRDCDKVIWNhET 102
                  6788********98554 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00013
                  --B-TTT-SB-...--.------EETTT-- CS
   PF00130.17  11 ptfCkhCgkfl...wg.kgkqglkCswCql 36 
                   ++Ck C++fl    + +++ + kC+ C +
  MMETSP0890-20130614|16681_1 107 FKWCKGCKNFLqigNFsQKLDAAKCDKCRE 136
                  589*********9955599*********86 PP

>> PF05495.7  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.4   1.8e+03      41      49 ..      50      58 ..      34      72 .. 0.61
   2 ?    7.9   3.1   0.00064       2.9      22      68 ..      90     135 ..      85     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.4
    PF05495.7 41 evlCgkCkk 49
                 + +C +C +
  MMETSP0890-20130614|16681_1 50 TQICVMCGN 58
                 334555544 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00064
    PF05495.7  22 CreCHdeaedHeleranvkevlCgkCkkeqtvkeykce.akekCskCk 68 
                  Cr C +   +He+++a      C+ Ck+ +++ + +++   +kC+kC+
  MMETSP0890-20130614|16681_1  90 CRDCDKVIWNHETSNAY--FKWCKGCKNFLQIGNFSQKlDAAKCDKCR 135
                  9***99999***99999..669**********99988878999****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       924  (0.0675834); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 1482.19
//
Query:       MMETSP0890-20130614|16683_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-06   26.8   0.7    1.5e-05   25.2   0.1    2.1  2  PF13640.1 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
        2.1    7.9   5.5       0.79    9.2   0.1    2.9  4  PF13661.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.77   5.3e+03      14      40 ..       9      37 ..       7      75 .. 0.57
   2 !   25.2   0.1   2.2e-09   1.5e-05       2      94 ..     342     422 ..     341     428 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.77
    PF13640.1 14 pHvDnse..sssrrltlllylndpew.eee 40
                 +H+D     s + ++++++  +   w +e 
  MMETSP0890-20130614|16683_1  9 WHYDDILrdSIDPVASIIVMWS-STWcKEA 37
                 8888755533333333333333.5555444 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 2.2e-09
    PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgrrla 94 
                  ++++y++g++l++HvD+    +++++++++l   +  ++ + l + +   ++g +++v      ++p+++++++s++++H+ ++   +g+ +a
  MMETSP0890-20130614|16683_1 342 GIREYHRGHELRMHVDRV--ATHVFSVIVNLD-QQGIDSDWTLDVIN---FDGTRNSVV-----MRPNTMLFYQSAKLIHGRPKP-LNGTLYA 422
                  6899*************6..********8888.44499999999998...999999999.....*****************9998.6666655 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.87   5.9e+03      25      30 ..       8      13 ..       8      18 .. 0.76
   2 ?   -3.5   0.0       1.1   7.4e+03      20      31 ..      53      64 ..      51      67 .. 0.77
   3 ?    9.2   0.1   0.00012      0.79      17      55 ..     345     379 ..     337     381 .. 0.86
   4 ?   -0.4   0.0      0.12   8.1e+02      50      61 ..     432     443 ..     395     449 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.87
    PF13661.1 25 dpHiDa 30
                 ++H+D 
  MMETSP0890-20130614|16683_1  8 GWHYDD 13
                 6****7 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.1
    PF13661.1 20 rgdffdpHiDad 31
                 r + f  H+D+ 
  MMETSP0890-20130614|16683_1 53 RAHVFIGHYDEA 64
                 6688999*9986 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00012
    PF13661.1  17 ratrgdffdpHiDadpsqlgkprflsallYLN.edwdadf 55 
                  +++rg+++ +H+D     +     +s++++L     d d+
  MMETSP0890-20130614|16683_1 345 EYHRGHELRMHVDRVATHV-----FSVIVNLDqQGIDSDW 379
                  699****************.....*******976666666 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.12
    PF13661.1  50 dwdadfdGgtlf 61 
                  dw++++++g  +
  MMETSP0890-20130614|16683_1 432 DWPYEYGAGDIL 443
                  577777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.53
# Mc/sec: 2093.42
//
Query:       MMETSP0890-20130614|16692_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-15   55.5   0.0    1.2e-14   54.2   0.0    1.8  1  PF00645.13 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
  ------ inclusion threshold ------
      0.052   13.3   0.8        9.7    6.1   0.0    2.4  2  PF12836.2  Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> PF00645.13  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.7e-18   1.2e-14       1      81 [.       3      82 ..       3      83 .. 0.93

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 1.7e-18
                 EE-S-S--B-SSS--B--SSSEEE------SS--------EEHHHHHTSSS--S.......-GGGEE---SS-HHHHHHHHHHH CS
   PF00645.13  1 eyAksgRakCkkCkekIekgelRigkvvespeedgkskkWrHlgCftekqlenaketk...eledldgfeeLkkedqekvkkal 81
                 eyAks+R++Ck  kekIekge+Rigk  ++     +  +W+ +  f+++  + +k++    ++++l gf++Lk+edq +++k +
  MMETSP0890-20130614|16692_1  3 EYAKSSRSTCKLSKEKIEKGEIRIGKQGPN----EDYLSWYKVLPFFQMLARMRKKDLrlkSTDELAGFDDLKEEDQTQIEKYI 82
                 8*************************9999....45899********99999988887999*******************9976 PP

>> PF12836.2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0021        14      30      64 ..      48      82 ..      45      83 .. 0.92
   2 ?    6.1   0.0    0.0014       9.7      25      65 .]     239     276 ..     237     276 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0021
    PF12836.2 30 IvayReknGpFksreeLlkvkglgpktfeqlkgfl 64
                 + + R+k  ++ks +eL+    l+++   q+++++
  MMETSP0890-20130614|16692_1 48 LARMRKKDLRLKSTDELAGFDDLKEEDQTQIEKYI 82
                 568899999************************99 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0014
    PF12836.2  25 klAknIvayReknGpFksreeLlkvkglgpktfeqlkgflr 65 
                  k+A++I ++     p++s +e +k k +g++  e++ +fl+
  MMETSP0890-20130614|16692_1 239 KVANRIAEQT---EPITSGKEAQKLKDIGKSSAEKIDEFLT 276
                  7888888888...8************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.47s 00:00:00.99 Elapsed: 00:00:00.60
# Mc/sec: 1158.24
//
Query:       MMETSP0890-20130614|16716_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-59  199.4   0.0    2.2e-59  199.2   0.0    1.0  1  PF11071.3 Protein of unknown function (DUF2872)


Domain annotation for each model (and alignments):
>> PF11071.3  Protein of unknown function (DUF2872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.2   0.0   1.6e-63   2.2e-59       1     140 [.      19     158 ..      19     159 .. 0.99

  Alignments for each domain:
  == domain 1    score: 199.2 bits;  conditional E-value: 1.6e-63
    PF11071.3   1 yLsGeihtdWreeikkgakekeLdveftspvtdheasDdigveilgeeekkfwkDeksakinairtkkliekaDivvvrfGdkykqWnaafDaglaaalgkslivlheeelahpLkevdaaalavaetpeqvveilkyvl 140
                  yLsGeih++Wre+i++g+k+++L+v +ts++t he sDd+g+ ilg+eek+   D+k+ak+n irtk+li++aDivvvrfG+ky+qWnaafDag+a+al k+li+lh+ +l hpLkev+a+alav+e+p+q+v+il+y +
  MMETSP0890-20130614|16716_1  19 YLSGEIHSNWRETIAQGVKDRKLPVILTSANTSHEDSDDCGAIILGDEEKRPNYDNKGAKMNLIRTKTLISEADIVVVRFGEKYRQWNAAFDAGFATALSKPLITLHPLSLGHPLKEVNASALAVCEEPTQIVDILDYTI 158
                  9*****************************************************************************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.82
# Mc/sec: 549.41
//
Query:       MMETSP0890-20130614|16777_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36   10.8   5.8       0.37   10.7   4.0    1.1  1  PF11521.3 C-terminal general transcription factor TFIIE alpha


Domain annotation for each model (and alignments):
>> PF11521.3  C-terminal general transcription factor TFIIE alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.0   2.7e-05      0.37       4      45 ..       7      50 ..       2      52 .] 0.52

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.7e-05
    PF11521.3  4 dtsesd.edsksaeppakqkvdeedededdefeeved.epvvmV 45
                 +t+e+d ++      p+++k+de+d+++d++ +e e+ ++vv V
  MMETSP0890-20130614|16777_1  7 STEEDDvPNHLMLAKPVDAKKDEKDKSNDNNVDEEEEaTDVVVV 50
                 34444323333445677778888888877665544431344433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.81
# Mc/sec: 153.84
//
Query:       MMETSP0890-20130614|16872_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-24   85.3   0.0      9e-24   84.1   0.0    1.6  2  PF13238.1  AAA domain
    8.1e-12   45.8   0.1    1.6e-11   44.8   0.1    1.6  1  PF13207.1  AAA domain
    6.7e-05   22.9   0.0    0.00014   21.9   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    0.00011   22.4   0.0    0.00026   21.3   0.0    1.6  1  PF13191.1  AAA ATPase domain
    0.00035   20.1   0.1     0.0033   17.0   0.0    2.2  2  PF13245.1  Part of AAA domain
    0.00037   20.2   0.1          1    9.0   0.0    2.5  2  PF01202.17 Shikimate kinase
    0.00083   18.3   0.0     0.0015   17.4   0.0    1.5  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
     0.0013   18.6   0.0     0.0034   17.2   0.0    1.7  2  PF13521.1  AAA domain
     0.0016   17.4   0.0     0.0024   16.8   0.0    1.3  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0021   17.8   0.0      0.062   13.0   0.0    2.3  2  PF13671.1  AAA domain
     0.0022   16.8   0.1     0.0035   16.1   0.1    1.3  1  PF00437.15 Type II/IV secretion system protein
     0.0056   15.9   0.0      0.013   14.8   0.0    1.6  1  PF01695.12 IstB-like ATP binding protein
      0.007   16.4   0.0      0.016   15.2   0.0    1.6  1  PF00910.17 RNA helicase
      0.009   16.0   0.0      0.023   14.6   0.0    1.6  2  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.011   14.5   0.0      0.019   13.7   0.0    1.4  1  PF05673.8  Protein of unknown function (DUF815)
      0.014   14.0   0.0       0.02   13.5   0.0    1.2  1  PF03308.11 ArgK protein
      0.018   14.3   0.0       0.03   13.7   0.0    1.3  1  PF01580.13 FtsK/SpoIIIE family
      0.019   13.9   0.0      0.031   13.3   0.0    1.3  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.029   13.4   0.0      0.059   12.4   0.0    1.5  2  PF08433.5  Chromatin associated protein KTI12
      0.032   12.8   0.0      0.049   12.2   0.0    1.2  1  PF06068.8  TIP49 C-terminus
      0.038   13.3   0.0      0.065   12.5   0.0    1.3  1  PF00158.21 Sigma-54 interaction domain
      0.052   13.1   0.0       0.11   12.1   0.0    1.6  1  PF07728.9  AAA domain (dynein-related subfamily)
      0.067   12.1   0.0       0.12   11.4   0.0    1.4  1  PF06414.7  Zeta toxin
      0.068   12.2   0.0       0.11   11.6   0.0    1.3  1  PF12846.2  AAA-like domain
      0.077   12.5   0.0      0.098   12.1   0.0    1.2  1  PF13086.1  AAA domain
      0.082   12.1   0.0       0.13   11.4   0.0    1.3  1  PF13481.1  AAA domain
      0.092   12.5   0.3       0.44   10.3   0.0    2.0  2  PF13189.1  Cytidylate kinase-like family
      0.096   11.7   0.1       0.16   11.0   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
      0.098   12.1   0.0       0.18   11.2   0.0    1.4  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
       0.12   11.3   0.0       0.19   10.6   0.0    1.3  1  PF06745.8  KaiC
       0.12   11.9   0.0       0.26   10.8   0.0    1.6  1  PF03266.10 NTPase


Domain annotation for each model (and alignments):
>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0     2e-26     9e-24       1     129 []      42     162 ..      42     162 .. 0.96
   2 ?   -2.1   0.0       8.7   3.8e+03      59      80 ..     176     198 ..     165     210 .. 0.59

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 2e-26
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl...gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlklvvLradpeelarRlekRgrkeekiaeneeaeilk 129
                  Il+tGtpG+GK+ la  La++l    +++++lak+ +  +++d++   +e++++dedk   l+d++e + +     + +i+++h +++++e+++ l+  vLra+  +l++Rl++R+++++ki+en ++ei++
  MMETSP0890-20130614|16872_1  42 ILVTGTPGTGKSALASVLASELdleYISVSELAKNIDAFDGWDPM---RECHIIDEDK---LIDAMEPKLA----VGGCIVEYHACDFFPERWFNLV-LVLRANTSVLYDRLAARDYSDDKIRENIQCEIMD 162
                  99*******************9**9999999**************...**********...9999999866....8999******************.*******************************996 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 8.7
    PF13238.1  59 lldkleenes.elaegenviidg 80 
                  ++ +l++n++ +l++++nv+i +
  MMETSP0890-20130614|16872_1 176 IVVQLHSNSDtDLVANKNVVIAW 198
                  44445554446777777766644 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.1   3.7e-14   1.6e-11       2     119 ..      42     147 ..      41     208 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.7e-14
                  E--B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS-B--..---B--SSGGGB-HHHHHHHH....H..HHHHHHTTS.-----------..EEEEE----TT...GGTTT-SSEEEEHHHHH CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlslddllreeglkeld..dgereskdadadllaaildglaakkdtlswvidgale.seldlrleead..eiiyldaplpe...crkrllkrrleregrdr 119
                  i++tG+pG+GKs la  La +l+l+++s ++  ++++++ +d  d+ re++++d+d+l + +++         + + g  + +e+  +  + +  +++ l+++l++   +++ +l+       rd+
  MMETSP0890-20130614|16872_1  42 ILVTGTPGTGKSALASVLASELDLEYISVSE--LAKNIDAFDgwDPMRECHIIDEDKLIDAMEPK--------LAVGG--CiVEY--HACDFFpeRWFNLVLVLRAntsVLYDRLAA------RDY 147
                  9******************************..888888777679999*****************........55555..11111..333333334555555554223366666664......333 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.2e-07   0.00014       1      30 [.      42      71 ..      42      87 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.2e-07
                 EEEE-------HHHHHHHHHHCTHEEEEEE CS
   PF00004.24  1 vllyGppGtGKTllakavakelgvefleis 30
                 +l++G+pGtGK++la+ +a+el+ e++++s
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYISVS 71
                 699*******************99998886 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.8e-07   0.00026      12      65 ..      31      76 ..      24     101 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 5.8e-07
    PF13191.1 12 Llaalrrvsegsp....lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65
                 ++a         +    ++lvtG +G+GKS+L+       l+++l  ++  +++l  n
  MMETSP0890-20130614|16872_1 31 VRARS-------GavraNILVTGTPGTGKSALASV-----LASELDLEYISVSELAKN 76
                 33333.......333669***************99.....777777777766666555 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.6e-06    0.0033       6      32 ..      37      61 ..      32      74 .. 0.77
   2 ?    0.2   0.0       1.3   5.8e+02      31      52 ..     195     217 ..     190     222 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.6e-06
    PF13245.1  6 alagnpllvvtGgPGtGKTttlaaiia 32
                 a++ +++lv tG PGtGK++++  +++
  MMETSP0890-20130614|16872_1 37 AVR-ANILV-TGTPGTGKSALASVLAS 61
                 666.88988.*********55544444 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.3
    PF13245.1  31 iaallaarekp.grsvllvaptg 52 
                  + a++ ++ +   +s ll+++ g
  MMETSP0890-20130614|16872_1 195 VIAWYNQWLQEqESSLLLLTGGG 217
                  55566556666566666665555 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0     0.003       1.3       1      25 [.      48      72 ..      48      81 .. 0.88
   2 !    9.0   0.0    0.0023         1      68     146 ..     107     184 ..      93     197 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.003
                 -----HHHHHHHHHHT--EEEEHHH CS
   PF01202.17  1 mGaGKstvGkllAkalglefiDlDd 25
                 +G+GKs ++  lA +l+le+i + +
  MMETSP0890-20130614|16872_1 48 PGTGKSALASVLASELDLEYISVSE 72
                 69*****************998755 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0023
                  -----TTSHHHHHHHCH....EEEEEE--HHHHHHHCHHHHC-CCGGSHHHHHHHHHHHH.HHHHHHHHHSSEEEECCSCHH CS
   PF01202.17  68 tGGgavlreenrellkek..givvyLdadleeiaerlkkdkeRpllqeeekeeelleela.ereplyeeaadlvvdedeksa 146
                   G g +++ ++ ++  e+   +v++L+a+  +++ rl++++      ++ +e  + e +    ++ ye +a ++v + ++++
  MMETSP0890-20130614|16872_1 107 VG-GCIVEYHACDFFPERwfNLVLVLRANTSVLYDRLAARDY---SDDKIRENIQCEIMDvLYQEAYESYAEHIVVQLHSNS 184
                  54.444445555555544225799*************99999...4445543333333334447788887777766555443 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.4e-06    0.0015       2      25 ..      40      63 ..      39      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.4e-06
    PF09848.4  2 kvilvtGvaGtGKtvvalnllael 25
                 + ilvtG +GtGK+ +a+ l++el
  MMETSP0890-20130614|16872_1 40 ANILVTGTPGTGKSALASVLASEL 63
                 679*******************99 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.7e-06    0.0034       2      33 ..      42      76 ..      41      96 .. 0.86
   2 ?   -1.9   0.0       5.9   2.6e+03      31      47 ..     144     159 ..     129     196 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.7e-06
    PF13521.1  2 ivitGgpstGKTtlleaLaar...gypvvpEvare 33
                 i +tG+p+tGK+ l++ La++   +y  v E a  
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASEldlEYISVSELAKN 76
                 89*****************6656677777887765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 5.9
    PF13521.1  31 arevleeklakgeealp 47 
                  ar+++++k +++ + ++
  MMETSP0890-20130614|16872_1 144 ARDYSDDKIRENIQ-CE 159
                  45555555544443.33 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.5e-06    0.0024      43      79 ..      31      68 ..       4      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.5e-06
    PF05496.7 43 akkreeal.dhvllyGpPGlGkttlakiiakelgvelk 79
                  ++r+ a+   +l++G PG Gk +la+++a+el+ e  
  MMETSP0890-20130614|16872_1 31 VRARSGAVrANILVTGTPGTGKSALASVLASELDLEYI 68
                 5556555425799********************98754 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00014     0.062       2      36 ..      42      76 ..      42     103 .. 0.86
   2 ?    2.4   0.0      0.26   1.1e+02     101     124 ..     128     151 ..     117     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00014
    PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkr 36
                 +l+ G pG+GKs la  l+ +l+ + +s  +l k 
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYISVSELAKN 76
                 6789*******************888887776665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.26
    PF13671.1 101 ivylevpeetlreRlakRerngdd 124
                  +++l +  ++l +Rla+R  + d+
  MMETSP0890-20130614|16872_1 128 VLVLRANTSVLYDRLAARDYSDDK 151
                  78999*************996543 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   7.9e-06    0.0035      98     153 ..       5      64 ..       2      72 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.9e-06
   PF00437.15  98 ssaslsledlaakgalk....kklaevlrqavqargnilvsGgTgsGKttllnallaein 153
                  s++s+sl + + k++++    k++ +v +++ + r nilv+G+ g+GK+ l+++l +e++
  MMETSP0890-20130614|16872_1   5 SQRSISLMKTGTKRSVEehddKEVTRVRARSGAVRANILVTGTPGTGKSALASVLASELD 64 
                  5555555555555444433338888888888899*****************999988876 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-05     0.013      47      70 ..      39      62 ..      12      80 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3e-05
   PF01695.12 47 aenlvllGpsGvGKthlAialgve 70
                 ++n++++G +G+GK+ lA  l+ e
  MMETSP0890-20130614|16872_1 39 RANILVTGTPGTGKSALASVLASE 62
                 68****************999875 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-05     0.016       1      57 [.      42      94 ..      42     102 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-05
   PF00910.17  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt.gqevvvidD 57
                 i+++G +g+GKS la  La++l  ++      sv   +++ d +dg++   e+++id+
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEY-----ISVSELAKNIDAFDGWDpMRECHIIDE 94
                 6899*************999998222.....455556888899999998888888886 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.3e-05     0.023       7      33 ..      42      68 ..      35     100 .. 0.85
   2 ?   -1.9   0.0       6.6   2.9e+03      21      66 ..     139     188 ..     136     213 .. 0.44

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.3e-05
    PF13401.1  7 lvvtGesGvGKTtllrrlarqldeeae 33
                 ++vtG +G+GK+ l+  la++ld e++
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYI 68
                 79******************9987765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 6.6
    PF13401.1  21 lrrlarqldeeaeaae..karvv..fveapastspkellqkllsalglpa 66 
                  + rla +++   +++e  +++++  +++ + ++ + ++  +l s+ + ++
  MMETSP0890-20130614|16872_1 139 YDRLAARDYSDDKIREniQCEIMdvLYQEAYESYAEHIVVQLHSNSDTDL 188
                  55555555555555554544433333333333334444444444444444 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-05     0.019      49      89 ..      35      75 ..      18      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.3e-05
    PF05673.8 49 kglpannvLLwGarGtGKSslvkallneyaeegLrlievek 89
                 +g+   n+L++G+ GtGKS+l   l +e+  e + + e++k
  MMETSP0890-20130614|16872_1 35 SGAVRANILVTGTPGTGKSALASVLASELDLEYISVSELAK 75
                 5667789********************99999998888877 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.6e-05      0.02      19      56 ..      28      66 ..       7      78 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.6e-05
                 HHHHGGG----E.EE--B-------HHHHHH---HHHH- CS
   PF03308.11 19 lrkilpkaGral.vvGltGvPGaGkstlveklikelrrr 56
                 ++++ +++G  +  + +tG+PG+Gks l + l+ el  +
  MMETSP0890-20130614|16872_1 28 VTRVRARSGAVRaNILVTGTPGTGKSALASVLASELDLE 66
                 56677777754314679**************99998765 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.7e-05      0.03      24      58 ..      20      59 ..       2      67 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.7e-05
   PF01580.13 24 kegsgkplvadlvkap.....hlLiaGatgsGKStflrtL 58
                 +e+ ++++v+ ++        ++L+ G++g+GKS    +L
  MMETSP0890-20130614|16872_1 20 VEEHDDKEVTRVRARSgavraNILVTGTPGTGKSALASVL 59
                 344444444444444477999*************877666 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.9e-05     0.031      20      44 ..      37      61 ..      20      78 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.9e-05
   PF01078.16 20 aGgHnlllvGppGsGKtmlakrlps 44
                 a + n+l++G+pG+GK+ la+ l+s
  MMETSP0890-20130614|16872_1 37 AVRANILVTGTPGTGKSALASVLAS 61
                 44679***************99876 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.059       4      32 ..      42      70 ..      40     101 .. 0.80
   2 ?   -3.3   0.0       8.4   3.7e+03      89     116 ..     164     191 ..     163     204 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00013
    PF08433.5  4 vvltGlPssGKstvakeLakaleeegrsv 32
                 +++tG P +GKs +a  La++l  e +sv
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYISV 70
                 89*******************98755444 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 8.4
    PF08433.5  89 Lyclakeakttlcvvyvvapletlvkwn 116
                  Ly +a e+  +++vv++  +++t +  n
  MMETSP0890-20130614|16872_1 164 LYQEAYESYAEHIVVQLHSNSDTDLVAN 191
                  6777777777777777777766655544 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011     0.049      52      75 ..      41      64 ..      28      76 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
    PF06068.8 52 avLlaGppgtGktalaiaiskelg 75
                  +L++G pgtGk+ala  ++ el 
  MMETSP0890-20130614|16872_1 41 NILVTGTPGTGKSALASVLASELD 64
                 59*******************997 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00015     0.065      13      43 ..      30      60 ..      19      73 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00015
                 HHHHHHTTS-S-EEEE-------HHHHHHHH CS
   PF00158.21 13 eqikkvaktdltvlitGesGtGKellAraih 43
                 +  ++  + ++++l+tG  GtGK+ lA+++ 
  MMETSP0890-20130614|16872_1 30 RVRARSGAVRANILVTGTPGTGKSALASVLA 60
                 44455556789****************9875 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00024      0.11       1      26 [.      41      66 ..      41     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00024
                 EEEEE------HHHHHHHGGGGBS-- CS
    PF07728.9  1 dvlLvGppGtgKselaerlaealnre 26
                 ++l+ G pGtgKs la  la+ l  e
  MMETSP0890-20130614|16872_1 41 NILVTGTPGTGKSALASVLASELDLE 66
                 57999**************9877544 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.12      14      46 ..      37      68 ..      24      82 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00026
    PF06414.7 14 ekpkavllgGqpGAGKtslaellleelaagniv 46
                 + +  +l+ G pG GK++la+ l  el + +++
  MMETSP0890-20130614|16872_1 37 AVRANILVTGTPGTGKSALASVLASEL-DLEYI 68
                 667789****************99999.55555 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.11       2      25 ..      40      63 ..      39      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00024
    PF12846.2  2 pntlilGppGsGKSvllkklvlql 25
                 +n+l++G+pG GKS l+  l+++l
  MMETSP0890-20130614|16872_1 40 ANILVTGTPGTGKSALASVLASEL 63
                 699*************99988765 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022     0.098      17      74 ..      41     194 ..      20     223 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00022
    PF13086.1  17 sgitliqGpPgtGKtttivelisql.....................................................................................lsek...............seseakkkkrvLvcapsnaavDeilerll 74 
                  +   l+ G PgtGK+     l s+l                                                                                        +               +e  +++ +++ v  +sn+  D ++ + +
  MMETSP0890-20130614|16872_1  41 N--ILVTGTPGTGKSALASVLASELdleyisvselaknidafdgwdpmrechiidedklidamepklavggciveyhacdffperwfnlvlvlrantsvlydrlaardysD--DkireniqceimdvlyQEAYESYAEHIVVQLHSNSDTDLVANKNV 194
                  3..59**********999999999999999999999999999999999999999999999999999999999999999999988888888888888888777777666540..1555667777778888999999****************9998844 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0003      0.13      36      56 ..      42      62 ..      16      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0003
    PF13481.1 36 tllaGapgtGKStlalqlaaa 56
                 +l++G pgtGKS la  la  
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASE 62
                 79*************999975 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     0.001      0.44       2      33 ..      42      74 ..      41      84 .. 0.85
   2 ?   -0.3   0.1       1.7   7.5e+02     118     176 ..     129     191 ..      86     194 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.001
    PF13189.1  2 ItIsrqyGSgGreigekLaeklgipyydk.eil 33
                 I ++++ G+g++ ++  La +l+++y++  e+ 
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYISVsELA 74
                 8899**********************9984444 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.7
    PF13189.1 118 vfiyadledRvervmereglsekeaekkik..ktDkrrakyykyytgkdw...gdaenydlvin 176
                  + + a+  + ++r+++r  +s++++++ i+   +D   ++ y+ y ++ +   ++ ++ dlv n
  MMETSP0890-20130614|16872_1 129 LVLRANTSVLYDRLAAR-DYSDDKIRENIQceIMDVLYQEAYESYAEHIVvqlHSNSDTDLVAN 191
                  55667777777777777.5666677766531145665555555555332222266666666655 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037      0.16      38      68 ..      42      72 ..       6      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00037
                 EEEE-------HHHHHHH--------S---- CS
   PF03193.11 38 svlvGqSGvGKSsLinallpeldlkvgevse 68
                 ++++G  G GKS+L  +l++eldl+  +vse
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYISVSE 72
                 4567********************9999987 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00041      0.18       2      28 ..      42      68 ..      41      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00041
    PF07726.6  2 vllegvPGlaktllvkalakaldlefk 28
                 +l++g+PG++k  l++ la+ ldle+ 
  MMETSP0890-20130614|16872_1 42 ILVTGTPGTGKSALASVLASELDLEYI 68
                 89*********************9986 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00043      0.19      19      37 ..      39      57 ..      34      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00043
    PF06745.8 19 grvvlitGepGtGKtifal 37
                 ++ +l+tG+pGtGK+ +a 
  MMETSP0890-20130614|16872_1 39 RANILVTGTPGTGKSALAS 57
                 5679***********9985 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00058      0.26       1      28 [.      41      68 ..      41      73 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00058
                 EEEEE-------HHHHHHHHHH-...-- CS
   PF03266.10  1 rvfiTGepgvGKtTlvkkvlellksegv 28
                 ++++TG pg+GK+ l + ++++l+ e +
  MMETSP0890-20130614|16872_1 41 NILVTGTPGTGKSALASVLASELDLEYI 68
                 589**************99999976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      451  (0.0329871); expected 273.4 (0.02)
Passed Vit filter:                        99  (0.00724108); expected 13.7 (0.001)
Passed Fwd filter:                        31  (0.00226741); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 664.44
//
Query:       MMETSP0890-20130614|16906_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   16.6   1.3      0.011   15.4   0.0    2.3  3  PF00627.26 UBA/TS-N domain


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     8e-07     0.011       3      35 ..       6      39 ..       4      40 .. 0.94
   2 ?   -2.4   0.0      0.32   4.4e+03      18      26 ..     124     132 ..     122     134 .. 0.75
   3 ?   -1.6   0.1      0.17   2.4e+03      27      37 .]     175     185 ..     174     185 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8e-07
                 HHHHHHHHH-.---HHHHHHHHHHTTTSHHHHHH CS
   PF00627.26  3 eeaiqqLreM.GfsreeakkALratnnnvErAve 35
                 ee+i  L +M G s eeak  L+ ++++v +A +
  MMETSP0890-20130614|16906_1  6 EESISILIAMtGISVEEAKGYLEMCGGDVSKALN 39
                 899**************************98876 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.32
                  HHHHHHHHT CS
   PF00627.26  18 eakkALrat 26 
                  +a +AL ++
  MMETSP0890-20130614|16906_1 124 TAEEALMRA 132
                  788999776 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.17
                  TTSHHHHHHHH CS
   PF00627.26  27 nnnvErAveyL 37 
                  n+n   A ++L
  MMETSP0890-20130614|16906_1 175 NGNYTSALNWL 185
                  788889****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.33s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 645.42
//
Query:       MMETSP0890-20130614|16894_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-22   78.9   0.0    1.4e-21   77.9   0.0    1.6  1  PF00702.21 haloacid dehalogenase-like hydrolase
    6.8e-16   57.8   7.9    6.8e-16   57.8   5.5    2.0  2  PF00122.15 E1-E2 ATPase
    2.8e-12   47.1   0.1    7.3e-12   45.7   0.1    1.7  1  PF12710.2  haloacid dehalogenase-like hydrolase
    0.00037   20.0   0.1    0.00081   18.9   0.1    1.5  1  PF08282.7  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0     4e-25   1.4e-21       1     203 [.     106     388 ..     106     389 .. 0.65

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 4e-25
                  ECEEEEECCTTTBETHHHH............HHHHHHHHHH..HHHCCCCCSCCHHHHHHHHHHHHHH.........CEECTCCHCCEECEEEE............................EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...................................H..............HHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC.......................SEEEEHHHTTSHHHHHHHHHHHTS-GG.GEEEEESSCTTHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxx............xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   PF00702.21   1 iktvvfDktGTLtegepsv............lgnkaalala..aaletgsehpigkavvaaakanstr.........tgfatfigrgvsgkvdg............................avgnpewmtalglrviapdlvaaegqskgrtvvvla...................................q..............aralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi.......................dslvfaevkPepklfvaaieeLqidpg.evamvGDgvnDapalaaA 203
                  ++++++DktGTLt+ + +v             ++  +l++   a+ +   + pi++a+ +       +         t            k  g                            +                                +l                                                    +++gv+ + dp++++ + ++++++  gi v ++tgd+++ a+ +a+  g+                       ++  fa+v P +k  + +++ Lq+  + +v m+GDgvnDapal++A
  MMETSP0890-20130614|16894_1 106 MNVLCSDKTGTLTTAKIQVfydliwtppesgFDRDHILEWCavASNPHAEDDPIDVAILRSFRDTFSQdynerikryT----------VKKFVGftpetkrtvvyashpkhgdikiskglidK--------------------------------ILDtsadggdefkcinkakvetrvrkidsdfahkgyktLgvaaaikdrsgsysMQFVGVVPMLDPPRDDTKWVIEQINLCGIdVKMITGDHQNIAAETARLIGLgdeilhrekltmresdekdelikKADGFAQVMPRDK--NDIVRILQT-LNyIVGMTGDGVNDAPALKQA 388
                  699****************************77777777775556666666666666666666633333333332220..........11111123322222222222221111112222210................................11122222222222223333333333333333333444044444445555556****************************************************999999999999888888888844488888*****..********5.555*****************9 PP

>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   5.5     2e-19   6.8e-16     133     229 ..       5     101 ..       1     102 [. 0.87
   2 ?   -4.0   2.0       1.6   5.4e+03     174     174 ..     471     471 ..     419     604 .. 0.60

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 2e-19
   PF00122.15 133 arlvqeaks.aetplqkkldrlaklllilvlavailifiislvtdvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiE 229
                  + l+q++++ +++ ++k++ ++ +  +++++++ i+ifi+ ++  ++e+++++l++++a+l++++P++Lp+++++tla+gaq++ak++++v +l++++
  MMETSP0890-20130614|16894_1   5 TMLMQQSTKpTQSVFEKSIIQVCERVMFVAVLILIAIFIVEWF-FRHENFITILTTCMAILIASVPVALPVVMQVTLALGAQEMAKQQAIVTHLTSMQ 101
                  44445555549999**********9999999999999966555.5*************************************************9986 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.6
   PF00122.15 174 v 174
                  +
  MMETSP0890-20130614|16894_1 471 F 471
                  1 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1   2.1e-15   7.3e-12       1     191 []     109     386 ..     109     386 .. 0.66

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 2.1e-15
                  EEE------B---..................HHHHHHHHH--H...HHH..................................................................................................HHHHHHHHHHHHT..-.HHHH----HHHHHHHHHH...............H--BHHHHHHH.......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-----HH----HHHHHHH.HHSHHHHHH.......HH---TT----S--EE---GGGHHHHH CS
    PF12710.2   1 avFDkDGTLteddtdflryllk.........lldvlgealakdaslaslkdst..........................................................................................cltlsdpkdllellaey..g.girviglaarylealake.ieea.......klfegfipdaaellkelhea.glrvvvlsgdprliakpvakelgidevnvlateledegggkvdgritgkld.gKaraverl.......vvlaykqvggrivvaiGDsanDlpalk 191
                  +++Dk+GTLt+ + +++ +l+                                                                                                                          c  +   ++  +++ +   + g+  +g aa+  ++ ++  ++++       + +++++     +++++ +  g++v +++gd ++ia ++a+  g++++ +    l      ++++    ++   Ka  ++++       +v+  +    +iv++ GD+ nD palk
  MMETSP0890-20130614|16894_1 109 LCSDKTGTLTTAKIQVFYDLIWtppesgfdrD--------------------HilewcavasnphaeddpidvailrsfrdtfsqdynerikrytvkkfvgftpetkrtvvyashpkhgdikiskglidkildtsadggdefkCINKAKVETRVRKIDSDfaHkGYKTLGVAAAIKDRSGSYsMQFVgvvpmldPPRDDTK----WVIEQI-NLcGIDVKMITGDHQNIAAETARLIGLGDEILHREKL------TMRESDEKDELiKKADGFAQVmprdkndIVRILQ-TLNYIVGMTGDGVNDAPALK 386
                  59***********4333333334433333331....................13333334444444555566777777777788888888888889999999999999999999999999999999999999999999998884444444555555555554466677888888777777766666577766665555555....888554.337*******************988888744333333......2222222222244555555557777777444443.44689*************97 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.4e-07   0.00081     208     244 ..     375     411 ..     360     415 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.4e-07
                  E----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE--- CS
    PF08282.7 208 fGDgeNDieMLelaglgvAmgnaspevkaaAdyvtds 244
                   GDg ND + L++a +g+A++ a++ + +aAd + ++
  MMETSP0890-20130614|16894_1 375 TGDGVNDAPALKQAHIGIAVEGATDAARSAADIILTT 411
                  6*******************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       712  (0.0520772); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.09u 0.39s 00:00:01.48 Elapsed: 00:00:01.17
# Mc/sec: 1443.96
//
Query:       MMETSP0890-20130614|16927_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-11   41.4   0.1    7.8e-11   41.4   0.1    1.0  1  PF00736.14 EF-1 guanine nucleotide exchange domain


Domain annotation for each model (and alignments):
>> PF00736.14  EF-1 guanine nucleotide exchange domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   5.7e-15   7.8e-11      35      88 ..       2      56 ..       1      57 [] 0.91

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.7e-15
                 .--EEEEEE-----EEEEEE---------HHHHHHHH...HHSTTEEEEEEEEEEE CS
   PF00736.14 35 wgkaskkepiaFGlkkLqvsvvieDdevstdeleeki..lgleeeVqsveivsfnk 88
                 w ++ ++ p+aFGlkk+ +++vi+ + +s+de++e+i    l +eVqs+e  s++ 
  MMETSP0890-20130614|16927_1  2 WSENCELRPVAFGLKKIALTAVINQT-ISMDEIIEEIteDILPDEVQSMELLSMSL 56
                 999********************875.**********766788**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 203.87
//
Query:       MMETSP0890-20130614|16942_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.9   0.2      0.029   13.8   0.1    1.4  1  PF12511.3 Protein of unknown function (DUF3716)
      0.047   13.2   0.7      0.073   12.6   0.1    1.6  2  PF10954.3 Protein of unknown function (DUF2755)


Domain annotation for each model (and alignments):
>> PF12511.3  Protein of unknown function (DUF3716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.3e-06     0.029      12      48 ..     248     283 ..     244     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-06
    PF12511.3  12 pepCtrCrrgrgpFkeCvvvpgseesklfkgaCaNCv 48 
                  + pC +C  ++  F + +   +   ++++  aC+NC+
  MMETSP0890-20130614|16942_1 248 QGPCPNCNVNNRIFFGDILGVEG-PGEEVTVACTNCK 283
                  569***************77666.677999******7 PP

>> PF10954.3  Protein of unknown function (DUF2755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.2   8.2e+03      33      46 ..      16      29 ..       8      32 .. 0.68
   2 ?   12.6   0.1   1.1e-05     0.073      32      87 ..     187     241 ..     171     247 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.2
    PF10954.3 33 cfwagaqllnllvh 46
                   w+  qll++  h
  MMETSP0890-20130614|16942_1 16 WSWISPQLLQIGKH 29
                 45788899887555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.1e-05
    PF10954.3  32 fcfwagaqllnllvhapgvyerlmqvqdtgrprveiglavgtifglvpfligcvil 87 
                  + ++a a ll ll  a g ye lm +     p + i+l++  ++++  f++  +i+
  MMETSP0890-20130614|16942_1 187 LVLYAPASLLGLLFWAGGTYE-LMPMTRNFNPLLTIALGLPIVLSIAQFVTEKIIF 241
                  678999**************8.9**************************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.75
# Mc/sec: 968.13
//
Query:       MMETSP0890-20130614|17026_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-08   34.1   0.1    7.7e-07   29.3   0.0    2.2  2  PF07876.7 Stress responsive A/B Barrel Domain
  ------ inclusion threshold ------
       0.12   11.3   0.0       0.16   11.0   0.0    1.1  1  PF09562.5 LlaMI restriction endonuclease


Domain annotation for each model (and alignments):
>> PF07876.7  Stress responsive A/B Barrel Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.1e-10   7.7e-07      46      96 ..      26      76 ..       2      77 .. 0.84
   2 ?    2.8   0.0     0.021   1.4e+02      46      75 ..     119     147 ..     105     153 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.1e-10
                 SSTT-----EEEEEEESSHHHHHHHHTSHHHHHHH.HHHHHTECEEEEEEE- CS
    PF07876.7 46 peglakgydhalvseFeseedlkaYlehpahvafv.elvkpllekrivvDfe 96
                 +eg   g++h+l++  ++ e+lkaYl+h  h + + + vkp+ + +iv+D e
  MMETSP0890-20130614|17026_1 26 GEG-SDGWTHCLFVIADTSEALKAYLHHDYHLKEWmNAVKPFGKGIIVFDSE 76
                 344.578*******************************************87 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.021
                  SSTT-----EEEEEEESSHHHHHHHHTSHH CS
    PF07876.7  46 peglakgydhalvseFeseedlkaYlehpa 75 
                  p++ a+g+++ l   F + + +k ++e  +
  MMETSP0890-20130614|17026_1 119 PDK-AGGFTYLLSAAFPDSATHKSFVESSD 147
                  444.799***************99998766 PP

>> PF09562.5  LlaMI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.3e-05      0.16     193     250 ..      21      83 ..       5      88 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.3e-05
    PF09562.5 193 dkledkfndkgwfkcltdsinayd..kiafgkpitfefwinlve...kgivyfdsgmyegnkr 250
                   k+ +     gw +cl    ++ +  k  + +   ++ w+n v+   kgi+ fds + e n r
  MMETSP0890-20130614|17026_1  21 AKFAKGEGSDGWTHCLFVIADTSEalKAYLHHDYHLKEWMNAVKpfgKGIIVFDSELAEENFR 83 
                  34444445689****987777766224456788999******965559*********999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 538.31
//
Query:       MMETSP0890-20130614|17077_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-55  186.5   0.0      2e-54  184.1   0.0    1.9  1  PF05711.6 Macrocin-O-methyltransferase (TylF)
    2.3e-07   31.5   0.0    6.5e-07   30.0   0.0    1.9  1  PF13578.1 Methyltransferase domain
     0.0017   17.6   0.0       0.15   11.2   0.0    2.2  2  PF04989.7 Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> PF05711.6  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.0   4.5e-58     2e-54       3     236 ..     190     469 ..     188     475 .. 0.86

  Alignments for each domain:
  == domain 1    score: 184.1 bits;  conditional E-value: 4.5e-58
    PF05711.6   3 aerelyldllkkvltnviyedaal...........................................eaelvkksafdeeareeGkdwPtvahtmiGlkrlenlqecveevladgvpGdlietGvWrGGacilmravlaay..gvedrtvwvadsfaGlPevdedeykadkelelhe....lnevlavsletvrenferygllddqvrflpGwfkdtlpeapie..rlavlrldGdlyestidaltslypklspGGfvivddyaidacreavkdyrdkhGitdei 236
                  ++++lyldl++++ltn++++d +                                             + l      +    ee +   +  ht +    l  lq +ve+  a+gv G lietGv+rGGaci++ra+laa   + ++r v+vadsf+G+P + + + +++++ ++ e     ++ ++  +++vr nf+ryglld++v f+pG+f+  lp+      ++a+lr+d d y+  +dal+ +yp lspGG v++ddy++ + ++av+ +r++h it+++
  MMETSP0890-20130614|17077_1 190 SSKDLYLDLMRRTLTNYVHSDFEDewksmlqaaglpesaqecgigsaafpfrkpceqpwniawraagVEGLA-----SGIDGEEEERARRRYHTTLSAGDLLHLQLLVESLFAQGVQGHLIETGVFRGGACIFLRALLAALlpNESERIVFVADSFQGIPPPRHINIQQNNQNSFVEptadWQDRFSFDEDSVRYNFRRYGLLDERVVFVPGFFNVSLPQLVTTkpKFALLRIDADAYDGVLDALNYIYPYLSPGGAVVIDDYHLSGAQAAVHFFRKQHNITAPL 469
                  5789***************99888899****************************98776654322111111.....1122233334456789***********************************************7557899***************999988888877543111156678899******************************98765237*******************************************************997 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.4e-10   6.5e-07       1     106 []     305     447 ..     305     447 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.4e-10
    PF13578.1   1 vEiGvysGvstlvllqalkrnga....grlysv.dpdpg...............................aeeaaalaee.agladrvrllkgdseealasla..dgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                  +E Gv++G   ++l ++l ++       r++ v d  +g                               +  ++ ++++   l++rv ++ g +   l++l   + ++ ll iD++ a+++vl +l+ ++p+l pgg v++dDy
  MMETSP0890-20130614|17077_1 305 IETGVFRGGACIFLRALL-AALLpnesERIVFVaDSFQGippprhiniqqnnqnsfveptadwqdrfsfdEDSVRYNFRRyGLLDERVVFVPGFFNVSLPQLVttKPKFALLRIDAD-AYDGVLDALNYIYPYLSPGGAVVIDDY 447
                  589999998655543333.22222344343333144444566666666655556777776666666666544466677775667779***************987779********9.9*************************8 PP

>> PF04989.7  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   3.3e-05      0.15      36      64 ..     304     334 ..     289     358 .. 0.84
   2 !    4.1   0.0     0.005        23     111     156 ..     411     455 ..     401     468 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
    PF04989.7  36 iiEtGiahGGSllflasllell..eekgkVl 64 
                  +iEtG+++GG  +fl+ ll++l  +e+ +++
  MMETSP0890-20130614|17077_1 304 LIETGVFRGGACIFLRALLAALlpNESERIV 334
                  79*****************999774444444 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.005
    PF04989.7 111 kkvlvilDsdHthehvlaeLeayaplvseGsYlvveDtiiedlpes 156
                  k  l+  D+d  ++ vl+ L++  p++s+G  +v+ D  +   ++ 
  MMETSP0890-20130614|17077_1 411 KFALLRIDAD-AYDGVLDALNYIYPYLSPGGAVVIDDYHLSGAQAA 455
                  5566777999.99************************988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:01.00
# Mc/sec: 1258.09
//
Query:       MMETSP0890-20130614|17098_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-19   67.6   2.8    2.4e-13   50.1   0.5    2.2  2  PF08238.7  Sel1 repeat
      0.002   18.0   0.4          2    8.7   0.0    2.3  2  PF13431.1  Tetratricopeptide repeat
     0.0028   17.0   4.6        3.5    7.2   0.1    3.1  3  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.0   3.0       0.14   11.7   2.2    2.0  1  PF13414.1  TPR repeat
      0.055   12.8   1.3        4.2    6.8   0.1    2.2  2  PF13696.1  Zinc knuckle
       0.45   10.4   3.5         18    5.4   0.7    3.0  2  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.5     1e-16   2.4e-13       1      38 [.       6      40 ..       6      41 .. 0.96
   2 !   17.9   0.0   1.4e-06    0.0033       1      22 [.      42      60 ..      42      63 .] 0.88

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1e-16
    PF08238.7  1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38
                 a+Aq++LG  ++y nG  Gv++++e+ +eWy++AA+qG
  MMETSP0890-20130614|17098_1  6 ADAQCYLG--LCYSNGH-GVEQNYELSVEWYRRAADQG 40
                 79******..999***8.9******************9 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.4e-06
    PF08238.7  1 aeAqynLGlyymylnGlgGvpk 22
                 a Aq+nLG  ++y nG  Gv++
  MMETSP0890-20130614|17098_1 42 ANAQCNLG--ECYSNGH-GVEQ 60
                 68******..999***8.9*98 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00086         2      10      27 ..       3      20 ..       1      30 [. 0.83
   2 !    8.0   0.0    0.0015       3.3      13      28 ..      42      57 ..      32      62 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00086
    PF13431.1 10 PnnadaynnLAelllnnG 27
                   +ada ++L+++++n  
  MMETSP0890-20130614|17098_1  3 QGDADAQCYLGLCYSNGH 20
                 579***********9865 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0015
    PF13431.1 13 adaynnLAelllnnGd 28
                 a+a +nL+e+++n   
  MMETSP0890-20130614|17098_1 42 ANAQCNLGECYSNGHG 57
                 8999********9765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2    0.0039       8.8       1      12 [.       6      17 ..       6      18 .. 0.90
   2 !    4.8   0.0    0.0087        20      15      27 ..      24      36 ..      20      39 .. 0.88
   3 !    7.2   0.1    0.0015       3.5       1      12 [.      42      53 ..      42      54 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnayl 12
                 a+a + lG++y 
  MMETSP0890-20130614|17098_1  6 ADAQCYLGLCYS 17
                 899********6 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0087
                 T-HHHHHHHHHHH CS
   PF00515.23 15 gkydeAleyyekA 27
                 ++y+  +e y++A
  MMETSP0890-20130614|17098_1 24 QNYELSVEWYRRA 36
                 69*********99 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnayl 12
                 a+a +nlG +y 
  MMETSP0890-20130614|17098_1 42 ANAQCNLGECYS 53
                 7899*******6 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.2   6.1e-05      0.14       4      49 ..       7      54 ..       5      61 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-05
    PF13414.1  4 ealkelGnalfk....egdydeAieayekAleldpnnaelyynlAlaylk 49
                 +a   lG ++ +    e++y+ ++e y++A +  +  a++ +nl+ +y +
  MMETSP0890-20130614|17098_1  7 DAQCYLGLCYSNghgvEQNYELSVEWYRRAADQGE--ANAQCNLGECYSN 54
                 555567777777667789************99986..8999999999976 PP

>> PF13696.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0019       4.2      13      19 ..      14      20 ..       6      24 .. 0.74
   2 ?    5.2   0.0    0.0057        13       9      19 ..      44      56 ..      41      60 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0019
    PF13696.1 13 lCfkkGH 19
                 lC+  GH
  MMETSP0890-20130614|17098_1 14 LCYSNGH 20
                 7****** PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0057
    PF13696.1  9 YlCHl..CfkkGH 19
                  +C l  C+  GH
  MMETSP0890-20130614|17098_1 44 AQCNLgeCYSNGH 56
                 5788777****** PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7    0.0078        18      14      28 ..      23      37 ..       6      40 .. 0.77
   2 ?    2.3   0.0     0.077   1.8e+02       1      11 [.      42      52 ..      42      55 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0078
                 TT-HHHHHHHHHHHH CS
   PF07719.12 14 lgdyeeAleafekAl 28
                  ++ye  +e++++A 
  MMETSP0890-20130614|17098_1 23 EQNYELSVEWYRRAA 37
                 578999999999986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.077
                 HHHHHHHHHHH CS
   PF07719.12  1 aealynlGlay 11
                 a a +nlG++y
  MMETSP0890-20130614|17098_1 42 ANAQCNLGECY 52
                 67899*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.87
# Mc/sec: 173.53
//
Query:       MMETSP0890-20130614|17093_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-05   22.7   0.0    6.1e-05   22.2   0.0    1.2  1  PF08123.8  Histone methylation protein DOT1
     0.0015   18.8   0.0     0.0041   17.4   0.0    1.7  2  PF08242.7  Methyltransferase domain
     0.0035   17.8   0.0     0.0056   17.1   0.0    1.5  1  PF12847.2  Methyltransferase domain
     0.0054   15.6   0.0      0.007   15.3   0.0    1.2  1  PF02390.12 Putative methyltransferase
     0.0055   16.6   0.1     0.0088   15.9   0.0    1.4  1  PF13659.1  Methyltransferase domain
     0.0077   15.6   0.0       0.01   15.2   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
  ------ inclusion threshold ------
      0.034   14.3   0.0      0.057   13.6   0.0    1.4  1  PF13649.1  Methyltransferase domain
       0.04   13.4   0.0      0.062   12.7   0.0    1.3  1  PF13847.1  Methyltransferase domain
      0.087   12.3   0.0        0.1   12.1   0.0    1.3  1  PF13489.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     4e-08   6.1e-05      16     141 ..      54     179 ..      44     227 .. 0.63

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 4e-08
                  -SSGGG----B-HHHHHHHHHHTT..-----E.EEEE------HHHHHHHH--.--EEE--B--HHHHHHHHHHHHHHH.HHHHH-------B---SS-STT-HHHHHHGGG-SEEEE--TT-.-HHHHHHH CS
    PF08123.8  16 kafsnevYGEllpeflsevldkvn..lkkedv.FvDLGSGvGnvvlqaalevg.cklsvGvEimdnaselaekqkeelk.krlklfGkklakiefirksFvenekveeiieeadvilvNNfaF.daelnkql 141
                  +++ + +YGE  +e l+e l+  +  lk+++v  +D+GSG G++v+ aal +     + GvEi+   + +a++ ++ ++ +   l+G   ++++f+  + +++ k  e  +++++ ++   aF  ++ n+ql
  MMETSP0890-20130614|17093_1  54 APGQELTYGEFEIESLEECLSAAThgLKENNVdLLDIGSGTGRLVMCAALLFPeWSCCRGVEISP--ALYADADARRIRaENQGLLGP--GHVHFACANVLTDMKL-EF-PHTNLFFIYATAFpAPRFNEQL 179
                  6778889************987542388887757899*************996256778***974..555555544443033344453..3445554444444333.33.5666666666666224566666 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.7e-06    0.0041       1      45 [.      88     133 ..      88     139 .. 0.91
   2 ?   -2.9   0.0       5.8   8.8e+03      52      70 ..     205     222 ..     193     229 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.7e-06
    PF08242.7   1 LeiGcGtGsllralleklpdieyt.gvDispsaiedakeklakren 45 
                  L+iG+GtG+l++  +  +p+++ + gv+isp+  +da ++  + en
  MMETSP0890-20130614|17093_1  88 LDIGSGTGRLVMCAALLFPEWSCCrGVEISPALYADADARRIRAEN 133
                  8*********************************999888777665 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.8
    PF08242.7  52 nlealdlldldggssfDvv 70 
                  ++ ++d   ld+ + fD+v
  MMETSP0890-20130614|17093_1 205 RIATTD-RALDPHAGFDLV 222
                  444444.345556788887 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.7e-06    0.0056       5      46 ..      87     134 ..      83     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.7e-06
    PF12847.2   5 ilDlGcGtGslslelarlrpgak.vvgvDpseeslelarena.....k 46 
                  +lD+G+GtG+l   +a l+p++    gv++s++ ++ a ++      +
  MMETSP0890-20130614|17093_1  87 LLDIGSGTGRLVMCAALLFPEWScCRGVEISPALYADADARRiraenQ 134
                  79*********999999******899*********9999876444332 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.6e-06     0.007      19      62 ..      83     127 ..      63     194 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.6e-06
                  GB-EEEE--------HHHHHHH-TTSEEE.---S-HHHHHHHHHH CS
   PF02390.12  19 eqklvleIGfGsGdflvalAkknPdklfl.GiEirqkvvekvlkk 62 
                  ++  +l+IG+G G++++  A  +P++++  G+Ei+ +  + + ++
  MMETSP0890-20130614|17093_1  83 NNVDLLDIGSGTGRLVMCAALLFPEWSCCrGVEISPALYADADAR 127
                  344799********************9766*****9988766443 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.8e-06    0.0088       4      78 ..      87     167 ..      84     219 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.8e-06
    PF13659.1   4 vldpgcGsGtfllaalell..aalllgvEldpraaalaa...rnlaragl..aervrvrqgdlrdlaellragsfdlvvtnp 78 
                  +ld+g+G+G +  +a+ l    +  +gvE++p+ +a a     ++++ gl  ++ v+++++++++    l  ++ +l ++  
  MMETSP0890-20130614|17093_1  87 LLDIGSGTGRLVMCAALLFpeWSCCRGVEISPALYADADarrIRAENQGLlgPGHVHFACANVLTDM-KLEFPHTNLFFIYA 167
                  79***********999997777999********7777663224455555544666999999986554.36555555555544 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.8e-06      0.01      75     131 ..      85     147 ..      70     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.8e-06
                  -EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHH.HHHHHTT--.....SEEEE-- CS
   PF01135.14  75 arvLevGsGsGyltavlarlvgekgrvvsierikelveeak.rnlkkldle.....nvivvvg 131
                     L++GsG+G l  + a l+ e     ++e ++ l+++a  r+++++++      +v++ ++
  MMETSP0890-20130614|17093_1  85 VDLLDIGSGTGRLVMCAALLFPEWSCCRGVEISPALYADADaRRIRAENQGllgpgHVHFACA 147
                  568********************999***********99972456665544556666666555 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.7e-05     0.057       2      73 ..      88     165 ..      87     200 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.7e-05
    PF13649.1   2 ldlGCGsGrviraltraldkgpe.qrvigvDiseealelak.erlss..kgl....kvkfvqada...ralpfeegefdlvvc 73 
                  ld+G+G+Gr ++ ++  ++   e + + gv+is+   + a+ +r+++  +gl    +v+f +a +   ++l+f++   +l ++
  MMETSP0890-20130614|17093_1  88 LDIGSGTGRLVMCAALLFP---EwSCCRGVEISPALYADADaRRIRAenQGLlgpgHVHFACANVltdMKLEFPH--TNLFFI 165
                  9**********99998883...3389********9988876555555444448889********98444455544..444333 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.1e-05     0.062       3      67 ..      83     154 ..      81     172 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.1e-05
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAke...raqklgfe...nveFiqgdiee.le 67 
                   ++ +lD+G+GtG+l   +a +l p+     G++is+   + A     ra+++g+     v+F  +++   ++
  MMETSP0890-20130614|17093_1  83 NNVDLLDIGSGTGRLVMCAA-LLFPEWScCRGVEISPALYADADArriRAENQGLLgpgHVHFACANVLTdMK 154
                  68899***************.8888777799999999988888776667777777666677777777666555 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.7e-05       0.1       9      58 ..      69     122 ..      61     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.7e-05
    PF13489.1   9 ladllerllarlkpgg.rvLDiGcGtGillellaengf..dvt.gvDpspaaig 58 
                  l++ l+++   lk+++  +LDiG+GtG+l+   a  ++  +++ gv++spa+  
  MMETSP0890-20130614|17093_1  69 LEECLSAATHGLKENNvDLLDIGSGTGRLVMCAALLFPewSCCrGVEISPALYA 122
                  5555555554455555489*********98888777554465569999987543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.95
# Mc/sec: 605.40
//
Query:       MMETSP0890-20130614|17109_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-07   30.1   0.0    5.3e-06   26.4   0.0    2.1  1  PF13462.1 Thioredoxin


Domain annotation for each model (and alignments):
>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.9e-10   5.3e-06       5     146 ..      45     219 ..      41     231 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.9e-10
    PF13462.1   5 divlGnpdApvtvieyadltCphCarfhee.vekllekyidtgkvkfiyrefpldkeg.slkaamaarcageq........s.effllikallysqqee...waes...eelaae..................algkdeefea..cledeklqalveadseeakaagiestPtfiingk 146
                  ++ +G p A+++++++ d++C   a+ + + +++l ++     +++++++ fpl+ ++ s++aa  ar   e+        +  +f    ++l+++q +   w++    e+l+++                  ++ +  ++++  +++++   a      + a a+ +++tPtf  ng 
  MMETSP0890-20130614|17109_1  45 GWQMGVPGASIEIEIFGDFSCDDTAKAYFTiIKPLSSEI---SNISIVFHAFPLPYHHnSFDAAQSARVIIEYlrderglsEkDAFIKCADALFANQTQfmsWQTPnptENLTQSqvistifapiaasadiptDVFLS-KIKNgwNVNQGGPFAPTRDAWKYAAARSVSATPTFAANGV 219
                  5779*********************97777256788886...89***********9999****999888766543223222123333333334444443233333334433332245555555565555554433333.2333134444443333444455567788888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:01.05
# Mc/sec: 529.48
//
Query:       MMETSP0890-20130614|17131_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-16   59.7   0.6    3.6e-12   45.6   0.2    2.2  2  PF00571.23 CBS domain


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.8e-06     0.079      36      55 ..       2      25 ..       1      27 [. 0.76
   2 !   45.6   0.2   2.6e-16   3.6e-12       1      52 [.      40     106 ..      40     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.8e-06
                 EEET....TEB---EEHHHHHHHH CS
   PF00571.23 36 vDed....grlvGiitlrDllkal 55
                 +D+       l+Gi+t+rDllk++
  MMETSP0890-20130614|17131_1  2 TDKAakpqRALAGIVTDRDLLKFV 25
                 555555556799**********97 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 2.6e-16
                  HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEE.....EE..ET......TEB---EEHHHHH CS
   PF00571.23   1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpV.....vD..ed......grlvGiitlrDll 52 
                  v ++mt   +vv+++p++t ++a+ei++++++++lpV     +D  ed       rlvG+++ +Dll
  MMETSP0890-20130614|17131_1  40 VTEIMTLaeNVVALTPNDTRQKAIEIMKARNIRHLPVletnyTDhvEDshsepsRRLVGVVSVSDLL 106
                  789**********************************88777334455778889************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 495.91
//
Query:       MMETSP0890-20130614|17135_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 497.15
//
Query:       MMETSP0890-20130614|17127_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-14   52.1   0.0    1.3e-13   51.1   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.5e-05   25.0   0.9       0.15   12.0   0.1    2.7  2  PF13401.1  AAA domain
    0.00035   21.2   3.3    0.00047   20.8   0.6    2.3  2  PF13207.1  AAA domain
    0.00038   19.8   0.2      0.038   13.3   0.1    2.5  1  PF05707.7  Zonular occludens toxin (Zot)
    0.00042   19.4   0.4     0.0031   16.5   0.1    2.1  2  PF01078.16 Magnesium chelatase, subunit ChlI
      0.001   18.6   1.5     0.0017   17.9   0.2    2.1  2  PF13245.1  Part of AAA domain
     0.0012   19.1   0.0     0.0031   17.7   0.0    1.7  1  PF13191.1  AAA ATPase domain
     0.0026   17.9   0.5      0.013   15.7   0.0    2.3  3  PF13238.1  AAA domain
     0.0028   17.3   0.0      0.019   14.6   0.0    2.1  2  PF04851.10 Type III restriction enzyme, res subunit
     0.0044   16.6   0.0     0.0096   15.5   0.0    1.6  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0094   15.2   0.3      0.024   13.9   0.2    1.8  1  PF13481.1  AAA domain
  ------ inclusion threshold ------
      0.019   14.2   2.0      0.057   12.7   0.0    2.2  2  PF01695.12 IstB-like ATP binding protein
      0.019   14.7   0.0      0.041   13.6   0.0    1.6  1  PF13671.1  AAA domain
      0.025   14.4   0.5      0.025   14.4   0.4    2.1  2  PF13521.1  AAA domain
      0.025   14.1   0.2      0.045   13.3   0.1    1.5  1  PF03266.10 NTPase
      0.026   13.6   0.0      0.026   13.6   0.0    1.7  2  PF08433.5  Chromatin associated protein KTI12
      0.031   13.5   0.9      0.065   12.5   0.1    1.9  2  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
      0.035   13.0   0.2       0.17   10.8   0.1    2.2  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.041   13.9   0.0      0.085   12.9   0.0    1.5  1  PF00910.17 RNA helicase
      0.049   13.1   0.2       0.12   11.9   0.0    1.8  2  PF01583.15 Adenylylsulphate kinase
      0.051   12.0   0.1      0.082   11.3   0.1    1.3  1  PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
      0.054   12.3   0.6       0.26   10.0   0.4    2.0  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
       0.11   11.1   0.3       0.29    9.7   0.2    1.6  1  PF03308.11 ArgK protein
        1.2    7.4   4.5        3.5    5.9   0.0    2.3  2  PF13148.1  Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.3e-16   1.3e-13       1     131 [.     137     269 ..     137     270 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 2.3e-16
                  EEEE-------HHHHHHHHHHC.......THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS..GGGS-HHHH.H.TTSCCEEE-- CS
   PF00004.24   1 vllyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr..pdkldpall.r.gRfdrkieie 131
                  ++++G pGtGKT++a  + + l       + +++     +l+ +yvg+++ k++e++k+a       +l+iDE++ l ++   ++++ +++ ++ Ll+++++ ++   +++v++a+++  +d++ + +    +R+  +i ++
  MMETSP0890-20130614|17127_1 137 MCFTGAPGTGKTTVAVRMGQILakmgycrSGHVVVATRDDLVGQYVGHTAPKTKEVIKQA--L--GGVLLIDEAYYLYNAA--NDRDYGQESIEILLNFMENHRE---DLVVVLAGYKdrMDRFFSYIPgMnSRIGNHIDFP 269
                  79*************999999755555555889************************987..3..39***********999..999******************9...4777777776568877777765567777777765 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00026      0.15       5      26 ..     135     156 ..     128     173 .. 0.88
   2 !   11.0   0.0   0.00055      0.31      88     124 ..     191     244 ..     156     252 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00026
    PF13401.1   5 gilvvtGesGvGKTtllrrlar 26 
                   ++++tG +G+GKTt++ r+ +
  MMETSP0890-20130614|17127_1 135 LHMCFTGAPGTGKTTVAVRMGQ 156
                  6899************988765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00055
    PF13401.1  88 t.......rlliiDEaqrL.....s....eealeelrslldd.etgvklvlvGt 124
                  +       ++l+iDEa +L          +e +e l  ++++ + ++ +vl+G 
  MMETSP0890-20130614|17127_1 191 EvikqalgGVLLIDEAYYLynaanDrdygQESIEILLNFMENhREDLVVVLAGY 244
                  234444459**********9877515677*******999999*********995 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       4.2   2.4e+03      35      47 ..      49      61 ..      23     121 .. 0.56
   2 !   20.8   0.6   8.2e-07   0.00047       3      85 ..     138     268 ..     137     323 .. 0.67

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 4.2
                 -GGGS-B-----B CS
    PF13207.1 35 reeglkelddger 47
                 r+  + e +++e 
  MMETSP0890-20130614|17127_1 49 RRAKWQEMEREEK 61
                 3333333333332 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 8.2e-07
                  --B--TT---HHHHHHHHHHS........TEEEEEGGG.B-........................-GGGS-B--.---B--SSGGGB-HHHHHHHH........H..HHHHHH.........TTS.----- CS
    PF13207.1   3 aitGppGsGKsTlakeLaerl........glpvlsldd.ll........................reeglkeld.dgereskdadadllaaildglaa....kkdtlswvidg.........ale.seldl 85 
                  ++tG+pG+GK+T+a +  + l        g +v+ + d l+                        ++e+++    +++r++ ++ +++l ++++++++    +  ++ + +d          ++  + +d+
  MMETSP0890-20130614|17127_1 138 CFTGAPGTGKTTVAVRMGQILakmgycrsGHVVVATRDdLVgqyvghtapktkevikqalggvllIDEAYYLYNaANDRDYGQESIEILLNFMENHREdlvvVLAGYKDRMDRffsyipgmnSRIgNHIDF 268
                  79***************999876655666555554444455888888888888888888888888777777555477788999999999999999965444444444444444666565555333333333 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   6.7e-05     0.038       5     115 ..     139     236 ..     137     242 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.7e-05
    PF05707.7   5 vtGkpGsGKtleaVsk.dilpalk...eGrkvitnidgLkleriekvlgekvkarlidisnpegeelekyldkwrtldkgallviDEcqqifpvrage..gkkvpevl.eafsehRhl 115
                  +tG+pG+GKt +aV + +il+++    +G  v+   d+L    + ++ g+ +++              k++ k    + g++l+iDE+ +++++ + +  g+++ e+l ++++ hR  
  MMETSP0890-20130614|17127_1 139 FTGAPGTGKTTVAVRMgQILAKMGycrSGHVVVATRDDL----VGQYVGHTAPK-------------TKEVIKQ---ALGGVLLIDEAYYLYNAANDRdyGQESIEILlNFMENHRED 236
                  79************9844555554443455555555534....44444444441.............1222222...35899999999999998776411445566666888888865 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.4e-06    0.0031      23      50 ..     135     162 ..     120     174 .. 0.87
   2 ?    0.4   0.0      0.48   2.8e+02      92     116 ..     183     207 ..     163     215 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5.4e-06
   PF01078.16  23 HnlllvGppGsGKtmlakrlpsllppls 50 
                   ++ ++G+pG+GKt +a r+ ++l+++ 
  MMETSP0890-20130614|17127_1 135 LHMCFTGAPGTGKTTVAVRMGQILAKMG 162
                  5799********************9985 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.48
   PF01078.16  92 GggskpkpGeislahnGvLfLDElp 116
                  G  +  ++  i  a  GvL++DE+ 
  MMETSP0890-20130614|17127_1 183 GHTAPKTKEVIKQALGGVLLIDEAY 207
                  334444555678999********75 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.8   3.3e+03      20      37 ..      18      35 ..      18      47 .. 0.55
   2 !   17.9   0.2   3.1e-06    0.0017      13      50 ..     138     173 ..     129     196 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 5.8
    PF13245.1 20 GtGKTttlaaiiaallaa 37
                 Gt+ Tt  a+  +++l++
  MMETSP0890-20130614|17127_1 18 GTDTTTSGARKLSEALEE 35
                 566665555555555533 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 3.1e-06
    PF13245.1  13 lvvtGgPGtGKTttlaaiiaallaarekp.grsvllvap 50 
                  +  tG PGtGKT t+a +  ++la +    +++ ++va 
  MMETSP0890-20130614|17127_1 138 CF-TGAPGTGKT-TVAVRMGQILA-KMGYcRSGHVVVAT 173
                  44.9********.77777777773.33344444555544 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.4e-06    0.0031      24      80 ..     128     183 ..     105     242 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.4e-06
    PF13191.1  24 p.......lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn....lpysaiiqalrellr 80 
                           +++tG++G+GK++++ +   +il++ ++  +g+++ ++r+    +            + 
  MMETSP0890-20130614|17127_1 128 FdtavpslHMCFTGAPGTGKTTVAVR-MGQILAKMGYCRSGHVVVATRDdlvgQ-----------YVG 183
                  1334445689**************99.667788899999999999888843320...........222 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       7.6   4.3e+03      47      50 ..      46      49 ..      23      77 .. 0.44
   2 !   15.7   0.0   2.2e-05     0.013       2      23 ..     138     179 ..     138     249 .. 0.65
   3 ?   -2.1   0.0         7     4e+03      23      67 ..     296     338 ..     281     362 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 7.6
    PF13238.1 47 eske 50
                 e ++
  MMETSP0890-20130614|17127_1 46 EAER 49
                 1111 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.2e-05
    PF13238.1   2 litGtpGvGKtTlakeLaerl....................g 23 
                  ++tG+pG+GKtT+a +  + l                    g
  MMETSP0890-20130614|17127_1 138 CFTGAPGTGKTTVAVRMGQILakmgycrsghvvvatrddlvG 179
                  68***********98774443333377665555555544441 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 7
    PF13238.1  23 gdvlrdlakengleeevddkidtkeskeldedkldelldkleene 67 
                  gdv +++++ +  +  + +   +   + +d+ +++++++++e  +
  MMETSP0890-20130614|17127_1 296 GDVFKQYIQRRMSMPFFSNA--RTVRNAMDRARMNSAIRTFEIAI 338
                  55555555544444444444..77788888888888888887665 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.4e-05     0.019      27      68 ..     136     183 ..     109     199 .. 0.84
   2 ?   -0.9   0.0         2   1.1e+03       5      33 ..     216     242 ..     212     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.4e-05
   PF04851.10  27 rglivmaTGtGKTlvaasliarlar......kflflvprkelleqale 68 
                  ++++  a GtGKT va ++ + la+        ++++ r +l+ q   
  MMETSP0890-20130614|17127_1 136 HMCFTGAPGTGKTTVAVRMGQILAKmgycrsGHVVVATRDDLVGQYVG 183
                  89***************866666668889999999*******999765 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2
   PF04851.10   5 rpyQeeaienllesiekedekkrglivma 33 
                  r+y +e ie ll+ +e++  ++ +++v+a
  MMETSP0890-20130614|17127_1 216 RDYGQESIEILLNFMENH--REDLVVVLA 242
                  89999************9..888888776 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-05    0.0096       1      73 [.     136     205 ..     136     215 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.7e-05
                  EEEEE------HHHHHHHGGGGB.....S--EEEEE--TT--HHHH---B--.........--------G-SEEEEES CS
    PF07728.9   1 dvlLvGppGtgKselaerlaeal.....nreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilvlDE 73 
                  +++  G+pGtgK+++a r+ + l     +r+ ++v  tr    +dl+g++    g+t+ + +++ ++a  g +l++DE
  MMETSP0890-20130614|17127_1 136 HMCFTGAPGTGKTTVAVRMGQILakmgyCRSGHVVVATR----DDLVGQYV---GHTAPKTKEVIKQA-LGGVLLIDE 205
                  6899***************99997666666666666655....88999888...44444444444333.355666665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   4.1e-05     0.024      35      59 ..     136     160 ..     122     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.1e-05
    PF13481.1  35 ltllaGapgtGKStlalqlaaavat 59 
                   ++++GapgtGK+t+a+ ++  +a+
  MMETSP0890-20130614|17127_1 136 HMCFTGAPGTGKTTVAVRMGQILAK 160
                  689**************99988774 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4      0.66   3.8e+02       2      44 ..      27      68 ..      26      72 .. 0.75
   2 ?   12.7   0.0   9.9e-05     0.057      50     120 ..     137     209 ..     127     233 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.66
   PF01695.12  2 rrlesrlklaklpakktledfdfdaargldkrlikelaslsfv 44
                 r+l++ l +a l  kk +e+ +++a+ + + ++ ++l++ +++
  MMETSP0890-20130614|17127_1 27 RKLSEALEEADLDRKKAIEEAERRAKWQ-EMEREEKLRKIQYM 68
                 7899999*************99998743.34444666666666 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 9.9e-05
   PF01695.12  50 lvllGpsGvGKthlAialgveavragl....svlfvrledLveeLkrakgdgrleralkrlakvdllilDdlgll 120
                  ++++G +G+GKt +A+ +g+  ++ g+    +v+ ++ +dLv +   + +  + ++ +k+     +l +D++ +l
  MMETSP0890-20130614|17127_1 137 MCFTGAPGTGKTTVAVRMGQILAKMGYcrsgHVVVATRDDLVGQYVGHTAP-KTKEVIKQA-LGGVLLIDEAYYL 209
                  799****************98877776333345556667777665443333.222233322.2345666766665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.2e-05     0.041       4      45 ..     139     189 ..     137     241 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.2e-05
    PF13671.1   4 lvGlpGsGKstlaerl...lkklg......yvrlsqdtlrkrlfgtdqqsk 45 
                  + G+pG+GK+t+a r+   l+k g       v+ + d+l  +  g   +++
  MMETSP0890-20130614|17127_1 139 FTGAPGTGKTTVAVRMgqiLAKMGycrsghVVVATRDDLVGQYVGHTAPKT 189
                  78**********999955533333444445788888888888777444433 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       3.7   2.1e+03      18      42 ..      32      59 ..      19      72 .. 0.51
   2 ?   14.4   0.4   4.4e-05     0.025       2      20 ..     137     155 ..     136     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 3.7
    PF13521.1 18 aLaar...gypvvpEvarevleeklakg 42
                 aL++      + ++E+ r+   ++++++
  MMETSP0890-20130614|17127_1 32 ALEEAdldRKKAIEEAERRAKWQEMERE 59
                 3333223223344444444444444443 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4.4e-05
    PF13521.1   2 ivitGgpstGKTtlleaLa 20 
                   ++tG+p+tGKTt++ ++ 
  MMETSP0890-20130614|17127_1 137 MCFTGAPGTGKTTVAVRMG 155
                  589**********995543 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.9e-05     0.045       2      40 ..     137     175 ..     136     205 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.9e-05
                  EEEE-------HHHHHHHHHH-...---EE--EEE---- CS
   PF03266.10   2 vfiTGepgvGKtTlvkkvlellksegvkvgGfyteevre 40 
                  +  TG pg+GKtT+  ++ + l++ g+  +G ++   r+
  MMETSP0890-20130614|17127_1 137 MCFTGAPGTGKTTVAVRMGQILAKMGYCRSGHVVVATRD 175
                  678**********************99999988877775 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.8       4.2   2.4e+03      17      58 ..      25      64 ..      22      70 .. 0.66
   2 ?   13.6   0.0   4.5e-05     0.026       5      41 ..     138     179 ..     137     198 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4.2
    PF08433.5 17 vakeLakaleeegrsvvvisdeslgiekdsykdskkekalRs 58
                  a++L++alee + +     +e+ +  + +++++++e++lR+
  MMETSP0890-20130614|17127_1 25 GARKLSEALEEADLDRKKAIEEAER--RAKWQEMEREEKLRK 64
                 5888888888877766555555444..455667788888876 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.5e-05
    PF08433.5   5 vltGlPssGKstvakeLakalee.....egrsvvvisdeslg 41 
                   +tG P +GK+tva ++ + l++     +g  vv  +d+ +g
  MMETSP0890-20130614|17127_1 138 CFTGAPGTGKTTVAVRMGQILAKmgycrSGHVVVATRDDLVG 179
                  58*********************9998555555555666655 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.7   2.7e+03     176     176 ..      61      61 ..      22     107 .. 0.51
   2 ?   12.5   0.1   0.00011     0.065       9      28 ..     144     163 ..     137     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4.7
                  x RF
   PF01656.18 176 k 176
                  k
  MMETSP0890-20130614|17127_1  61 K 61 
                  1 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00011
                  xxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   9 GvGKTtlaanLaralakrgl 28 
                  G+GKTt+a+ ++++lak g+
  MMETSP0890-20130614|17127_1 144 GTGKTTVAVRMGQILAKMGY 163
                  9****************997 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00029      0.17      52      93 ..     136     178 ..     107     250 .. 0.78
   2 ?   -0.9   0.0       1.1   6.1e+02     167     202 ..     259     294 ..     254     323 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00029
    PF05496.7  52 hvllyGpPGlGkttlakiiakelgvelkvtsgPvle.kagdla 93 
                  h+ ++G+PG Gktt+a  + + l       sg v+     dl+
  MMETSP0890-20130614|17127_1 136 HMCFTGAPGTGKTTVAVRMGQILAKMGYCRSGHVVVaTRDDLV 178
                  999*************999888877777777766540444565 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.1
    PF05496.7 167 rdrfgivarlefyeveelkeivkrsakileveieee 202
                   +r g +  +  yev+el ei +  a+ le ++   
  MMETSP0890-20130614|17127_1 259 NSRIGNHIDFPNYEVDELFEISQVMARDLEYNLAPG 294
                  677788888888999999999999888888877654 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00015     0.085       2      51 ..     138     185 ..     137     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00015
   PF00910.17   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqe 51 
                  +++G++g+GK+t+a + + ++l k+++ ++++v+  +++dd + +Y g++
  MMETSP0890-20130614|17127_1 138 CFTGAPGTGKTTVAVR-MGQILAKMGYCRSGHVV-VATRDDLVGQYVGHT 185
                  799*************.55566688899878875.488889888888876 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       9.8   5.6e+03      50      64 ..      52      66 ..      27      71 .. 0.66
   2 ?   11.9   0.0   0.00021      0.12       4      31 ..     136     163 ..     133     179 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 9.8
                 ---HHHHHHHHHHHH CS
   PF01583.15 50 gfseedReenirrva 64
                  ++e +Ree++r++ 
  MMETSP0890-20130614|17127_1 52 KWQEMEREEKLRKIQ 66
                 455667777777765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00021
                  EEEEE-ETT---HHHHHHHHHHHHCTS- CS
   PF01583.15   4 vvwltGlsgsGKstiavalekkLvekgi 31 
                   + +tG  g+GK+t+av++ + L ++g+
  MMETSP0890-20130614|17127_1 136 HMCFTGAPGTGKTTVAVRMGQILAKMGY 163
                  5789********************9996 PP

>> PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014     0.082      10      37 ..     129     156 ..     122     193 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
    PF10412.4  10 pkesetqhilivGttGtGKtqalrelld 37 
                   +     h++++G+ GtGKt++  ++ +
  MMETSP0890-20130614|17127_1 129 DTAVPSLHMCFTGAPGTGKTTVAVRMGQ 156
                  5566788**************9887643 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   0.00046      0.26       7     124 ..     140     241 ..     136     248 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00046
    PF09848.4   7 tGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrllt.kkdqkekksgenqlkellkrak..vvval 124
                  tG++GtGKt va+++ + l        +    +++  v + r +l +++     ++++ k +++i+++           v+++DEA  l +  +d+++ ++  + l + +++ +  +vv+l
  MMETSP0890-20130614|17127_1 140 TGAPGTGKTTVAVRMGQIL-------AKMGYCRSGHVVVATRDDLVGQY----VGHTAPKTKEVIKQAL--------GGVLLIDEAYYLYNaANDRDYGQESIEILLNFMENHRedLVVVL 241
                  8************988777.......33444555666666778887777....7888888888888888........78888888888888334445555556667777776444566665 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2    0.0005      0.29      30      58 ..     135     163 ..     115     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0005
                  EEE--B-------HHHHHH---HHHH--- CS
   PF03308.11  30 lvvGltGvPGaGkstlveklikelrrrGk 58 
                  l + +tG PG+Gk t+  ++++ l++ G+
  MMETSP0890-20130614|17127_1 135 LHMCFTGAPGTGKTTVAVRMGQILAKMGY 163
                  56789*****************9999986 PP

>> PF13148.1  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   2.0      0.22   1.3e+02      63     103 ..      26      66 ..      19      80 .. 0.79
   2 ?    5.9   0.0    0.0061       3.5      34      59 ..     129     154 ..     113     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.22
    PF13148.1  63 leeieeelreeyeeelkeykaekeiweaekkglekkakkaa 103
                  ++++ e+l+e+  +++k+ +++++ +++++++ e+k++k +
  MMETSP0890-20130614|17127_1  26 ARKLSEALEEADLDRKKAIEEAERRAKWQEMEREEKLRKIQ 66 
                  67778888888889999999999999999999999998866 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0061
    PF13148.1  34 kreppsLyllvvaesGegKsavdkla 59 
                   +  psL ++ ++ +G+gK++v   +
  MMETSP0890-20130614|17127_1 129 DTAVPSLHMCFTGAPGTGKTTVAVRM 154
                  5679*****************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.62
# Mc/sec: 1449.41
//
Query:       MMETSP0890-20130614|17137_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 1020.07
//
Query:       MMETSP0890-20130614|17146_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.4   2.6    1.7e-05   24.3   2.0    3.2  2  PF07732.10 Multicopper oxidase
    0.00044   19.6  16.3     0.0008   18.8   6.9    3.6  3  PF07731.9  Multicopper oxidase


Domain annotation for each model (and alignments):
>> PF07732.10  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   2.0   2.6e-09   1.7e-05      16     117 ..      61     182 ..      52     185 .. 0.78
   2 ?   -1.1   0.0      0.19   1.3e+03      62      89 ..     317     344 ..     307     354 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.6e-09
                  EE----------EEEEE---EEEEEEEE-S...S...........S-B-EEEE-----GG.....G---TT..T-B-TT-EEEEEEE--S..-SEEEEEEE--TTT..HHH------EEEE- CS
   PF07732.10  16 kvitvNgqfpgptievregdevvvnvtNkl...d...........enttihwhGlrqrktswaDGvdgvtq..cpippgesftykftvkq..qagtlwYHshlsll..qqaaGlaGaiiied 117
                  ++  +N++++  t+++  gd v++++tN l   d           ++t +h+hG ++++ + aD v    q  + +   +s ty +++ +   +g  w H+h ++    q++G +++++i+d
  MMETSP0890-20130614|17146_1  61 TTRCFNEMIVAHTLHIYPGDVVTIKMTNYLsnkDehtnnngwqllNKTNLHFHGAHISADPPADDVLTYIQpwDLVSEPNSITYIYHMPEyhTSGLAWLHPHPHGAaaLQTMGAFAMVVIHD 182
                  566799*********************9885432333333333334789***********9999998776633567777888888887764478999********987668*********97 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.19
                  .....G---TTT-B-TT-EEEEEEE--S CS
   PF07732.10  62 swaDGvdgvtqcpippgesftykftvkq 89 
                  ++  G+  vtq  + pg++ ++ ++ ++
  MMETSP0890-20130614|17146_1 317 PILEGMRDVTQMWMYPGSRADFAVKCNE 344
                  566899************9999888776 PP

>> PF07731.9  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.15     1e+03      38      61 ..      76     113 ..      53     118 .. 0.50
   2 ?    0.5   0.0      0.05   3.4e+02      91     119 ..     323     353 ..     313     364 .. 0.83
   3 !   18.8   6.9   1.2e-07    0.0008      55     134 ..     589     677 ..     567     680 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.15
                  EETT-EEEEEEEE----..............-EEEEES CS
    PF07731.9  38 lenndvveivlqnnste..............aHPfHlH 61 
                  +  +dvv i ++n  ++              +  +H+H
  MMETSP0890-20130614|17146_1  76 IYPGDVVTIKMTNYLSNkdehtnnngwqllnKTNLHFH 113
                  33333343333332222222333334444444444555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.05
                  BSEE..EE-TT-EEEEEEE------EEEEES CS
    PF07731.9  91 rdtv..qvppggwvairfkadnpGvWllHCH 119
                  rd++  +++pg+++  ++k ++pG ++l ++
  MMETSP0890-20130614|17146_1 323 RDVTqmWMYPGSRADFAVKCNEPGEFVLESE 353
                  5655115789****************99876 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 1.2e-07
                  -EEEEESSEEEEEEEEE-B-HCCH...........TBB---GGG-EEBSEEEE-TT-EEEEEEE--.----EEEEES-HHHHHTT-EEEEEE CS
    PF07731.9  55 aHPfHlHGhdfqvlgqgggpwdpd...........sretlnlenpvrrdtvqvppggwvairfkad.npGvWllHCHilwHlsaGlalqfvv 134
                   HP+H+H +  q +++++  +              + +   +++    d +++p+ +++    ++d  +   ++HCHil H+++G++++f +
  MMETSP0890-20130614|17146_1 589 FHPIHFHVNPYQWVKTDFTGT--LlpgvesveqfnEFTGNYFKEGDFGDSMMIPNPANIF-HQQLDqFASKMVMHCHILPHEDWGMMMVFDI 677
                  7**************999885..2458999999966666667788889999999666655.55666699********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.38s 00:00:01.40 Elapsed: 00:00:00.91
# Mc/sec: 1964.49
//
Query:       MMETSP0890-20130614|17147_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.71
# Mc/sec: 907.92
//
Query:       MMETSP0890-20130614|17148_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-27   93.9  17.6    1.3e-26   93.5  12.2    1.1  1  PF00487.19 Fatty acid desaturase
      2e-13   49.2   0.1    3.2e-13   48.5   0.0    1.4  1  PF08557.5  Sphingolipid Delta4-desaturase (DES)


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5  12.2   1.9e-30   1.3e-26       3     247 ..      94     312 ..      91     320 .. 0.91

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 1.9e-30
   PF00487.19   3 wlllllalllaalllsilvnlaHealHgalfrsrrlnrvlglllall.lgissla.wrrsHlrhHhytgnaekDpdsalrrlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkglalllallilalllalaglllllsglgalllyvvplalaltvlllvnyleHygletednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelk 247
                  ++++l+a+++++++ ++l+  +He++H++ f+  r+n++ + l+a l +gi++ a ++  H+ hH+y g  + D+d++++              ++l+  l   +++  + +l+ + r ++ k+++       + ll +++ +a+ ++l+ + g+gal+++vv +++a   l  ++  +H+    e +  a d+ + +++         +ln++++n +yH+eHH fP+++w++Lp l++ + e+++
  MMETSP0890-20130614|17148_1  94 PWFWLIAYVVGGTCNQALFLGIHELSHNLGFKMIRANKLYSILVANLpIGIPYAAsFKPYHMDHHKYQGVKGVDTDLPTE------------LEGKLFSSLPGKAFFATFQILFYALRPMMVKFQPL----TYYHLLNIVAQVAFDLVLVRYFGMGALFYLVVSTLFAGSGLHPCA--AHFIA--EHYVFAADWETYSYY--------GWLNFFCFNVGYHNEHHDFPNIAWSKLPSLRKLASEYYD 312
                  89******************************************************************************............88999999999999999999999999999999999....59999999*********9999999999999999888766666666..36655..556688888888887........8*****************************999999876 PP

>> PF08557.5  Sphingolipid Delta4-desaturase (DES)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   4.7e-17   3.2e-13       3      39 .]      31      67 ..      29      67 .. 0.93

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 4.7e-17
    PF08557.5  3 rddFyWtyteePHasRRkeILkkYPeikkLmGpdplt 39
                 + dF+ + +eePH sRR+eILkkY ei++L+G++plt
  MMETSP0890-20130614|17148_1 31 EYDFILSLKEEPHFSRRMEILKKYKEIQSLFGYEPLT 67
                 67999999***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.60
# Mc/sec: 1401.87
//
Query:       MMETSP0890-20130614|17173_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   33.7   5.7    5.3e-08   32.3   2.3    2.2  2  PF00098.18 Zinc knuckle
     0.0025   17.1   0.6     0.0048   16.2   0.4    1.4  1  PF13696.1  Zinc knuckle
     0.0026   17.3   2.1     0.0058   16.2   1.4    1.5  1  PF13917.1  Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   2.3   1.2e-11   5.3e-08       2      17 ..     121     136 ..     120     137 .. 0.96
   2 ?    1.5   0.0     0.064   2.9e+02      13      18 .]     153     158 ..     152     158 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.2e-11
                  --S------------S CS
   PF00098.18   2 kCynCGkeGHlardCp 17 
                  +C++CG+ GH+ardCp
  MMETSP0890-20130614|17173_1 121 TCFRCGEKGHWARDCP 136
                  7**************9 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.064
                  ----SS CS
   PF00098.18  13 ardCpe 18 
                  ++dC++
  MMETSP0890-20130614|17173_1 153 SKDCTQ 158
                  8***97 PP

>> PF13696.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   1.1e-06    0.0048      10      27 ..     121     138 ..     114     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.1e-06
    PF13696.1  10 lCHlCfkkGHyIsDCPqa 27 
                   C  C +kGH+ +DCP +
  MMETSP0890-20130614|17173_1 121 TCFRCGEKGHWARDCPRN 138
                  6888999*********97 PP

>> PF13917.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.4   1.3e-06    0.0058       4      22 ..     119     137 ..     117     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-06
    PF13917.1   4 sarCQKClkkGHwtYECkn 22 
                  +a+C +C++kGHw+  C+ 
  MMETSP0890-20130614|17173_1 119 QATCFRCGEKGHWARDCPR 137
                  789**************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 693.68
//
Query:       MMETSP0890-20130614|17229_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-31  106.7   0.0    2.4e-12   46.9   0.0    3.4  3  PF12796.2  Ankyrin repeats (3 copies)
    9.5e-28   94.4   0.0      2e-07   30.3   0.0    7.3  7  PF00023.25 Ankyrin repeat
    8.8e-23   80.1   0.3    3.5e-08   33.6   0.0    5.7  6  PF13637.1  Ankyrin repeats (many copies)
    7.7e-22   75.0   0.1    0.00022   21.0   0.0    6.7  7  PF13606.1  Ankyrin repeat
    2.1e-20   72.1   0.0      2e-06   27.7   0.0    6.2  7  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.1e-12     3e-09       6      65 ..      15      82 ..      10      86 .. 0.80
   2 !   19.0   0.0   4.4e-07    0.0012      38      86 ..      89     141 ..      81     143 .. 0.79
   3 !   46.9   0.0   8.7e-16   2.4e-12       2      85 ..     153     243 ..     152     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.1e-12
    PF12796.2  6 engnlelvklLle.kgadvdl..get......pLhlAaeagnleivklLleagadvnakdkegntpLhl 65
                  +g++elv+ L++ +  + d+    +      pL +Aa++g+ +iv++Ll++ga+++  +++g tpL +
  MMETSP0890-20130614|17229_1 15 FSGDVELVRRLIKqASVEDDIvnE-RnlseftPLLAAARRGHRQIVEILLDNGAEIDLANQYGVTPLLI 82
                 5899********855544444542.2466677*************************999******976 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 4.4e-07
    PF12796.2  38 nleivklLleagadvnakd...kegntpLhlAvrnghlelvklLl.ekgadvn 86 
                  +l+++++Ll++ga ++  +    + +tpL  Av+n+++ +v  L+ e++a+vn
  MMETSP0890-20130614|17229_1  89 SLNCMRILLQRGAMCDRITytqGSPETPLLRAVKNKNIGAVSSLIdEYKANVN 141
                  67899999999988866556678999999999999999999999956688887 PP

  == domain 3    score: 46.9 bits;  conditional E-value: 8.7e-16
    PF12796.2   2 hlAaengnlelvklLlekg...advdl...getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadv 85 
                  hl ++   l+ +++L+e+g    d+d    + tpL +A+e+g+l +vkl l++ga+vn+ +  +g tpL +A+ n+++ ++k++l+ g d+
  MMETSP0890-20130614|17229_1 153 HLLISAAPLKSIQILIEAGasrFDIDKqssRGTPLQIAIEQGSLSAVKLFLKKGASVNQISeSSGLTPLRIAIINQKVAIMKYILDWGRDI 243
                  5566677789999****9944447774554555**************************999************************99997 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.13   3.7e+02      11      24 ..      15      28 ..      14      33 .. 0.85
   2 !   30.3   0.0   7.3e-11     2e-07       3      32 ..      44      73 ..      42      74 .. 0.94
   3 !    4.9   0.0    0.0082        22       2      26 ..      76     101 ..      75     107 .. 0.75
   4 !   13.4   0.0   1.7e-05     0.047       3      29 ..     114     141 ..     114     143 .. 0.95
   5 ?    2.0   0.0     0.066   1.8e+02      17      28 ..     163     174 ..     153     179 .. 0.83
   6 !   22.1   0.0     3e-08   8.1e-05       4      30 ..     185     211 ..     185     213 .. 0.97
   7 !    9.9   0.0   0.00021      0.57       2      28 ..     217     243 ..     216     247 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.13
                 HTTHHHHHHHHHHT CS
   PF00023.25 11 lrgnlevvklLlsq 24
                 ++g++e v+ L++q
  MMETSP0890-20130614|17229_1 15 FSGDVELVRRLIKQ 28
                 789*********95 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 7.3e-11
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25  3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32
                 fTPL  Aa+rg+ ++v+ Ll++GA++++ +
  MMETSP0890-20130614|17229_1 44 FTPLLAAARRGHRQIVEILLDNGAEIDLAN 73
                 9*************************9876 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0082
                  SCBHHHHHHHTT.HHHHHHHHHHTTS CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklLlsqGA 26 
                  G TPL + a    +l++++ Ll++GA
  MMETSP0890-20130614|17229_1  76 GVTPLLITAGIPaSLNCMRILLQRGA 101
                  556665555555789**********9 PP

  == domain 4    score: 13.4 bits;  conditional E-value: 1.7e-05
                  CBHHHHHHHTTHHHHHHHHHH.TTSSTT CS
   PF00023.25   3 fTPLHlAalrgnlevvklLls.qGAdln 29 
                  +TPL  A+++ n+  v+ L++ + A++n
  MMETSP0890-20130614|17229_1 114 ETPLLRAVKNKNIGAVSSLIDeYKANVN 141
                  5**************************9 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.066
                  HHHHHHHTTSST CS
   PF00023.25  17 vvklLlsqGAdl 28 
                   ++ L+++GA+ 
  MMETSP0890-20130614|17229_1 163 SIQILIEAGASR 174
                  589*******95 PP

  == domain 6    score: 22.1 bits;  conditional E-value: 3e-08
                  BHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlna 30 
                  TPL +A++ g+l+ vkl+l++GA++n 
  MMETSP0890-20130614|17229_1 185 TPLQIAIEQGSLSAVKLFLKKGASVNQ 211
                  9************************96 PP

  == domain 7    score: 9.9 bits;  conditional E-value: 0.00021
                  SCBHHHHHHHTTHHHHHHHHHHTTSST CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdl 28 
                  G TPL +A+++  + ++k+ l+ G d+
  MMETSP0890-20130614|17229_1 217 GLTPLRIAIINQKVAIMKYILDWGRDI 243
                  99********************99887 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.3e-08   3.4e-05      11      54 .]      16      63 ..      11      63 .. 0.93
   2 !    6.9   0.0    0.0031       8.4      16      40 ..      58      82 ..      56      97 .. 0.83
   3 !    9.7   0.0   0.00041       1.1      10      51 ..      86     130 ..      77     133 .. 0.76
   4 !   19.4   0.0   3.5e-07   0.00096       6      54 .]     152     203 ..     147     203 .. 0.82
   5 !   33.6   0.0   1.3e-11   3.5e-08       3      54 .]     185     237 ..     183     237 .. 0.95
   6 ?   -0.4   0.0      0.61   1.7e+03      31      53 ..     275     298 ..     254     314 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.3e-08
    PF13637.1 11 sgrlelvklLlek.gid...inrtdesGntaLhiAalrgnieilklLl 54
                 sg++elv+ L+++  ++   +n ++ s +t+L  Aa+rg+ +i++ Ll
  MMETSP0890-20130614|17229_1 16 SGDVELVRRLIKQaSVEddiVNERNLSEFTPLLAAARRGHRQIVEILL 63
                 799********7657889***************************997 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0031
    PF13637.1 16 lvklLlekgidinrtdesGntaLhi 40
                 +v+ Ll++g++i+  + +G t+L i
  MMETSP0890-20130614|17229_1 58 IVEILLDNGAEIDLANQYGVTPLLI 82
                 7999******************987 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00041
    PF13637.1  10 isgrlelvklLlekgidinrt...desGntaLhiAalrgnieilk 51 
                  i   l + + Ll++g+ ++r+    +s +t+L +A+++ ni ++ 
  MMETSP0890-20130614|17229_1  86 IPASLNCMRILLQRGAMCDRItytQGSPETPLLRAVKNKNIGAVS 130
                  55678889999999977555544378889************9885 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 3.5e-07
    PF13637.1   6 hyaai.sgrlelvklLlekgid...inrtdesGntaLhiAalrgnieilklLl 54 
                  h++ i + +l+ ++ L+e g++   i+++ +s  t+L+iA++ g ++++kl+l
  MMETSP0890-20130614|17229_1 152 HHLLIsAAPLKSIQILIEAGASrfdIDKQ-SSRGTPLQIAIEQGSLSAVKLFL 203
                  555554999********876555559999.6799*****************97 PP

  == domain 5    score: 33.6 bits;  conditional E-value: 1.3e-11
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                  t+L  a+ +g l +vkl l+kg+++n++  +sG t+L iA+ ++ + i k+ l
  MMETSP0890-20130614|17229_1 185 TPLQIAIEQGSLSAVKLFLKKGASVNQIsESSGLTPLRIAIINQKVAIMKYIL 237
                  89**************************8899*****************9976 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.61
    PF13637.1  31 desGntaLhiAa.lrgnieilklL 53 
                  d++G+++   ++ ++ +++il++L
  MMETSP0890-20130614|17229_1 275 DSEGRSLAEWVLhYNLDPRILNYL 298
                  666666666666444477777766 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   4.3e+03      12      23 ..      16      27 ..      14      30 .. 0.86
   2 !   21.0   0.0   7.9e-08   0.00022       3      29 ..      44      70 ..      42      71 .. 0.94
   3 ?   -0.9   0.0      0.92   2.5e+03       1      26 [.      75     101 ..      75     104 .. 0.62
   4 !   11.9   0.0   7.1e-05      0.19       3      29 ..     114     141 ..     112     142 .. 0.91
   5 ?    2.5   0.0     0.077   2.1e+02       7      26 ..     152     172 ..     146     179 .. 0.66
   6 !   17.6   0.0     1e-06    0.0028       4      29 ..     185     210 ..     182     211 .. 0.95
   7 !   12.4   0.0     5e-05      0.14       2      28 ..     217     243 ..     216     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
    PF13606.1 12 ngrielveaLle 23
                 +g +elv+ L++
  MMETSP0890-20130614|17229_1 16 SGDVELVRRLIK 27
                 6889******96 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 7.9e-08
    PF13606.1  3 nTpLhlAasngrielveaLlengadin 29
                  TpL  Aa++g+ ++ve+Ll+nga i+
  MMETSP0890-20130614|17229_1 44 FTPLLAAARRGHRQIVEILLDNGAEID 70
                 69**********************986 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.92
    PF13606.1   1 nGnTpLhlAas.ngrielveaLlenga 26 
                  +G TpL + a    +++ +++Ll++ga
  MMETSP0890-20130614|17229_1  75 YGVTPLLITAGiPASLNCMRILLQRGA 101
                  567777654442456666777777775 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 7.1e-05
    PF13606.1   3 nTpLhlAasngrielveaLle.ngadin 29 
                  +TpL  A++n++i +v+ L++ + a++n
  MMETSP0890-20130614|17229_1 114 ETPLLRAVKNKNIGAVSSLIDeYKANVN 141
                  6*******************64789998 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.077
    PF13606.1   7 hlA.asngrielveaLlenga 26 
                  h+  +s   ++ +++L+e+ga
  MMETSP0890-20130614|17229_1 152 HHLlISAAPLKSIQILIEAGA 172
                  5540444567889******98 PP

  == domain 6    score: 17.6 bits;  conditional E-value: 1e-06
    PF13606.1   4 TpLhlAasngrielveaLlengadin 29 
                  TpL +A+++g++++v++ l++ga +n
  MMETSP0890-20130614|17229_1 185 TPLQIAIEQGSLSAVKLFLKKGASVN 210
                  9***********************99 PP

  == domain 7    score: 12.4 bits;  conditional E-value: 5e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G TpL +A+ n++++++++ l+ g di
  MMETSP0890-20130614|17229_1 217 GLTPLRIAIINQKVAIMKYILDWGRDI 243
                  89********************99887 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.84   2.3e+03      27      38 ..      17      29 ..      14      41 .. 0.72
   2 !   24.7   0.0   6.3e-09   1.7e-05       9      53 ..      36      80 ..      31      82 .. 0.89
   3 !    5.0   0.0    0.0099        27      13      43 ..      73     104 ..      70     109 .. 0.88
   4 !    6.8   0.0    0.0028       7.6      12      43 ..     109     141 ..     104     152 .. 0.82
   5 !   27.7   0.0   7.3e-10     2e-06       1      56 []     167     224 ..     167     224 .. 0.91
   6 !   10.6   0.0   0.00017      0.47      11      42 ..     212     243 ..     209     257 .. 0.89
   7 ?   -1.8   0.0       1.4   3.7e+03      31      46 ..     281     296 ..     270     297 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.84
    PF13857.1 27 galevvrlLl.ap 38
                 g++e+vr L+ ++
  MMETSP0890-20130614|17229_1 17 GDVELVRRLIkQA 29
                 899******9554 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 6.3e-09
    PF13857.1  9 vnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53
                 vn ++++ +tpL  Aa++g+ ++v++Ll++ga ++l + +g t+l
  MMETSP0890-20130614|17229_1 36 VNERNLSEFTPLLAAARRGHRQIVEILLDNGAEIDLANQYGVTPL 80
                 567778888******************************998887 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0099
    PF13857.1  13 deggntpLhlAak.ggalevvrlLlapgadln 43 
                  +++g+tpL ++a    +l+++r+Ll++ga ++
  MMETSP0890-20130614|17229_1  73 NQYGVTPLLITAGiPASLNCMRILLQRGAMCD 104
                  67899*******9999************9987 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0028
    PF13857.1  12 tdeggntpLhlAakggalevvrlLl.apgadln 43 
                  t+++ +tpL  A+k+ +  +v  L+ ++ a+ n
  MMETSP0890-20130614|17229_1 109 TQGSPETPLLRAVKNKNIGAVSSLIdEYKANVN 141
                  556667*******************87766654 PP

  == domain 5    score: 27.7 bits;  conditional E-value: 7.3e-10
    PF13857.1   1 Llehgpadvnatdeggn..tpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldlA 56 
                  L+e+g a+ ++ d++++  tpL +A+++g+l++v+l+l++ga+ n   ++  lt+l +A
  MMETSP0890-20130614|17229_1 167 LIEAG-ASRFDIDKQSSrgTPLQIAIEQGSLSAVKLFLKKGASVNQISESSgLTPLRIA 224
                  77888.8888888888888**************************9999999****998 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 0.00017
    PF13857.1  11 atdeggntpLhlAakggalevvrlLlapgadl 42 
                   ++ +g tpL +A+ ++ + +++++l++g d+
  MMETSP0890-20130614|17229_1 212 ISESSGLTPLRIAIINQKVAIMKYILDWGRDI 243
                  5678999*******************998886 PP

  == domain 7    score: -1.8 bits;  conditional E-value: 1.4
    PF13857.1  31 vvrlLlapgadlnlrd 46 
                  ++++ l+++ d+++ +
  MMETSP0890-20130614|17229_1 281 LAEWVLHYNLDPRILN 296
                  5788888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.45s 00:00:01.13 Elapsed: 00:00:00.73
# Mc/sec: 1119.39
//
Query:       MMETSP0890-20130614|17243_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-24   83.9   0.0    1.2e-23   83.5   0.0    1.0  1  PF03959.8  Serine hydrolase (FSH1)
    1.8e-05   24.2   0.0      0.053   12.9   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold
    4.6e-05   23.1   0.0    5.4e-05   22.8   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    0.00025   20.9   0.0      0.017   14.8   0.0    2.1  2  PF12697.2  Alpha/beta hydrolase family
    0.00025   20.7   0.0    0.00043   20.0   0.0    1.4  1  PF08386.5  TAP-like protein
  ------ inclusion threshold ------
      0.072   12.4   0.7       0.74    9.0   0.5    2.2  1  PF02230.11 Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   5.3e-27   1.2e-23      32     198 ..      15     194 ..       3     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 5.3e-27
    PF03959.8  32 kklnvelvyldapveleekadlpkseseeee..kseeeeeyraWfrkkde....sneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkeakhpklkfailvsGfkleepk............yeeyy....eedki..qtpsLhvlGelDtvvdeerseaLaeafknsskvlkHpg 198
                  +  ++e+++ld+ +e+ + +++++s ++ ++   +++  +yr+W+++ +     +  ye+++e++++v +++ +++ fdGiiGFSqG+ laa ++++  +++   +  +lk+a + s+f +++++                     e+  +  ++++L    e+D +v++  +++La+af + s+ + +pg
  MMETSP0890-20130614|17243_1  15 S-PDLECIFLDGIHEC-TREEATRSDPALRQffPESDYGPYREWWNSGKPdeegNIIYERFDECIQYVSEILAKEH-FDGIIGFSQGGSLAANIVAMSIKGQL--QSSHLKWAWIQSSFIPRHSSkslhvandlfsqL---KssgtEK--LsnEIKVLVTTHEQDPIVPSRATRSLANAFPD-STYISFPG 194
                  4.489***********.6666666766666689999**********988777877889***************999.*****************999999987..8899************99988899877775542...1222234..3459****************************.99999998 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00024      0.55      16      64 ..      62     108 ..      34     116 .. 0.83
   2 !   12.9   0.0   2.3e-05     0.053     174     211 ..     157     194 ..     116     209 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00024
                  E...S.GGGGSHHHHHHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHH CS
   PF00561.15  16 paggpelphyttddlardleavldalglkk.ltlvGhSmGGmialayaae 64 
                  p    e  +++++ + +++++v + l  ++   ++G+S+GG +a++  a+
  MMETSP0890-20130614|17243_1  62 P---DEEGNIIYERFDECIQYVSEILAKEHfDGIIGFSQGGSLAANIVAM 108
                  3...6778999999****************989************98887 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.3e-05
                  -TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETT CS
   PF00561.15 174 ilvptlvisgtdDplvpykaseklaelipksqlvvidg 211
                    +++lv   ++Dp+vp  a ++la+++p s ++ ++g
  MMETSP0890-20130614|17243_1 157 NEIKVLVTTHEQDPIVPSRATRSLANAFPDSTYISFPG 194
                  467899999*************************9998 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.4e-08   5.4e-05      61     141 ..      91     197 ..      37     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.4e-08
    PF12695.2  61 ilvGhSlGGgvalelag.......rddrvkglvllapf.pdgedlakltl....................pvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                  +++G+S+GG++a+++++       + +++k + + ++f p + + + l++                    +vl+   ++D +vp  + + la+a+p d++++ ++g  H
  MMETSP0890-20130614|17243_1  91 GIIGFSQGGSLAANIVAmsikgqlQSSHLKWAWIQSSFiP-RHSSKSLHVandlfsqlkssgteklsneiKVLVTTHEQDPIVPSRATRSLANAFP-DSTYISFPGKVH 197
                  689**************99999876688888888777642.33333333344445555556677777777*****************999999998.679999999877 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.015        35      66      85 ..      87     107 ..      53     112 .. 0.63
   2 !   14.8   0.0   7.6e-06     0.017     170     215 ..     153     197 ..     113     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.015
                  --EE.EE--------HHHHHH CS
    PF12697.2  66 rpvv.lvGHSlGgavalaaaa 85 
                  + ++ ++G S+Gg++a++++a
  MMETSP0890-20130614|17243_1  87 EHFDgIIGFSQGGSLAANIVA 107
                  3343389**********9887 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 7.6e-06
                  HHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSS CS
    PF12697.2 170 ealarldvPvlviageaDrvvppeearrlaealpgarvvvlpgagH 215
                  e l++  ++vlv + e+D++vp ++ r la+a+p+++++ +pg  H
  MMETSP0890-20130614|17243_1 153 EKLSN-EIKVLVTTHEQDPIVPSRATRSLANAFPDSTYISFPGKVH 197
                  33333.69**********************************9666 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.9e-07   0.00043      30      77 ..     154     201 ..     134     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.9e-07
    PF08386.5  30 kakgappvLlvqnelDPatpyegakklaralggavlvtvegeGHgala 77 
                  k  ++++vL+ ++e DP++p + +++la+a+++++ +  +g+ H  + 
  MMETSP0890-20130614|17243_1 154 KLSNEIKVLVTTHEQDPIVPSRATRSLANAFPDSTYISFPGKVHRLVS 201
                  334469***********************************9998775 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5   0.00033      0.74     109     125 ..      92     108 ..      46     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00033
   PF02230.11 109 igGFSqGaalalylalt 125
                  i+GFSqG+ la   +  
  MMETSP0890-20130614|17243_1  92 IIGFSQGGSLAANIVAM 108
                  89*******99776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 868.19
//
Query:       MMETSP0890-20130614|17263_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.34s 00:00:00.74 Elapsed: 00:00:00.71
# Mc/sec: 462.40
//
Query:       MMETSP0890-20130614|17270_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.6   2.5       0.13   11.4   1.8    1.3  1  PF03261.10 Cyclin-dependent kinase 5 activator protein


Domain annotation for each model (and alignments):
>> PF03261.10  Cyclin-dependent kinase 5 activator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.8   9.2e-06      0.13      53     155 ..      79     181 ..      14     234 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.2e-06
   PF03261.10  53 salswkrlvassskkkkeskkstanlvsfkanllesasssykkrviqlnrenlkks.kprpsdttlslanlssleeefrrqlqntvqdlveevlagspkkaaaP 155
                   ++  krl+  + k +++++++ a+  ++ a+  +s s +y +  +  ++e+ k+s + r++d+tl l   ++l+ +  ++ q + ++++++    +p++  a 
  MMETSP0890-20130614|17270_1  79 RVIHGKRLSDEAFKAEIDAQRKRAQALAYLAQTEDSVSEDYLRGEAAQQHEREKRSrVERTKDNTLALLAEQELHSK-LDSIQSKIRQMKKKDDNVTPASILAG 181
                  477889****999************99**************999888888888887467888888888777777766.45555544444433333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1047  (0.0765799); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.64
# Mc/sec: 902.38
//
Query:       MMETSP0890-20130614|17319_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-08   31.6   0.0    0.00042   19.0   0.0    2.3  2  PF05686.7  Glycosyl transferase family 90
  ------ inclusion threshold ------
       0.25    9.4   0.2       0.24    9.5   0.1    1.1  1  PF03547.13 Membrane transport protein
        1.2    8.4  12.7        1.8    7.9   8.8    1.2  1  PF12043.3  Domain of unknown function (DUF3527)
        5.6    5.9  12.5        9.8    5.1   8.6    1.4  1  PF13203.1  Putative metallopeptidase domain


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07   0.00042     102     171 ..     220     288 ..     191     297 .. 0.85
   2 !   10.2   0.0   5.6e-05      0.19     236     323 ..     447     530 ..     435     546 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.2e-07
    PF05686.7 102 keaappPlfsycgdeetl..DivfPdwsfwgwpevnikrwslllkelkegnkkvkweerepyaywkGnpsva 171
                  ++++ +P+f + +++ +    i+ P+  f g + v  +rw+  +k+ +e++++ +w +r p   w+G    +
  MMETSP0890-20130614|17319_1 220 TSHSDVPIFTFGKTNGYSqpGILVPNPHF-GRSHV--RRWERISKQFEEAAQRHPWDDRLPRVLWRGPFATH 288
                  455789******999765227****9888.67776..******************************76655 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 5.6e-05
    PF05686.7 236 acdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakll 323
                  + +s vl+ +++  ++++  L+  +  + i++++ ++ ++ +     ++d++aq++a e+     ++L    +++++++Ll +Y + +
  MMETSP0890-20130614|17319_1 447 LLGSAVLFWHSPAVEWYYPALNDGVTHLTIDRNTAINVVQDL----IHDDNRAQRLAIEAAGVYDNHLCPSCIMEFWVELLDRYNRRF 530
                  5579999999999*******************8888877777....568899********************************9865 PP

>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   6.9e-05      0.24     160     221 ..      10      73 ..       2     392 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 6.9e-05
   PF03547.13 160 etaasivsikvdsdvvsldgse.aleteeeikedgklhvtvrksnasrsdivs.........stprpsnltn 221
                  e ++s +s  +d+ + s+++s+  + t++e k  +k  ++ +ks+ s++d+           +       t+
  MMETSP0890-20130614|17319_1  10 ERSSSTKSHDKDNTKKSQKKSKsSSSTSDE-KVSSKNKSSGSKSSVSNQDQQRskeeqdlasL-------TS 73 
                  666666777777777777776655556555.33333333333333333333332433332321.......22 PP

>> PF12043.3  Domain of unknown function (DUF3527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.8   0.00051       1.8     112     195 ..      11      92 ..       2     123 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00051
    PF12043.3 112 rksltaeekkglskkvvealksseserslsrdsltsailkersqeqlqehsdneaslslekedlhpnlEiaAivikdp.vekres 195
                  r+s+t++++   +++++++ k+s+s++s+s ++++s++ ++ s+ ++++++++++      + l  ++E aA+v  ++  +++ +
  MMETSP0890-20130614|17319_1  11 RSSSTKSHD---KDNTKKSQKKSKSSSSTSDEKVSSKNKSSGSKSSVSNQDQQRSKEEQDLASLTSSQERAATVSGNTaQHRSRE 92 
                  333333333...4555666777777788899*********************9999999999*************6662333222 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.6    0.0029       9.8     143     274 ..       9     138 ..       1     152 [. 0.51

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0029
    PF13203.1 143 kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaeaeearewrerlaraleagraaGklpgaLarlladllkpklp.WeklLrrllaravadkpdiswsrPa 274
                  ++rs++ +++++d+ ++s+++ ++++  s ++ +++ +++   + + +++++ +++++ + +    +e a+ ++ + a  ++  r+a +l + +  + + l + k    ++ +r+++++ ++++p++ w+rP 
  MMETSP0890-20130614|17319_1   9 VERSSSTKSHDKDNTKKSQKKSKSSSSTSDEKVSSKNKSSGSKSSVSNQDQQRSKEEQDLASLTSSQERAATVSGNTA--QHRSREAEGLYAVMDMMHNSLGRYKALrKRSSIRAFVES-LRNHPSVKWARPP 138
                  334444444444444444443333333333333333333333333333333333222222222222222223444433..477888999999999999998887766366677766665.5556999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1258  (0.0920129); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.25u 0.39s 00:00:01.64 Elapsed: 00:00:00.86
# Mc/sec: 1546.49
//
Query:       MMETSP0890-20130614|17344_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-10   38.6   0.1     0.0006   18.8   0.0    2.4  2  PF00036.27 EF hand
    6.8e-09   34.5   0.1    0.00011   21.2   0.0    2.4  2  PF13202.1  EF hand
    3.2e-08   32.6   0.3     0.0028   17.3   0.0    2.4  2  PF13405.1  EF-hand domain
    3.6e-08   33.3   0.1    1.1e-07   31.7   0.0    1.8  1  PF13499.1  EF-hand domain pair
    3.6e-06   26.3   0.1      0.055   12.9   0.0    2.3  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.1e-07    0.0014       4      22 ..      51      69 ..      48      74 .. 0.92
   2 !   18.8   0.0   2.2e-07    0.0006       4      28 ..      91     115 ..      90     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.1e-07
                 HHHHHHCTTTSSEBEHHHH CS
   PF00036.27  4 eaFkefDkDgdGkIsfeEf 22
                 +aF++fD + dG Is+ E+
  MMETSP0890-20130614|17344_1 51 RAFDLFDANCDGVISVAEL 69
                 89****************8 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.2e-07
                  HHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   4 eaFkefDkDgdGkIsfeEfkealkk 28 
                  ++F+++D Dgd  Is +Ef+ea+++
  MMETSP0890-20130614|17344_1  91 KLFALLDLDGDAVISRQEFCEAVRD 115
                  79*******************9975 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.1e-08   0.00011       4      21 ..      52      69 ..      50      74 .. 0.91
   2 !   10.8   0.0   7.9e-05      0.22       3      21 ..      91     109 ..      90     114 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.1e-08
                 HHHHH--S----B-HHHH CS
    PF13202.1  4 tFrafDlNgDGkIsreEL 21
                 +F+ fD+N DG Is  EL
  MMETSP0890-20130614|17344_1 52 AFDLFDANCDGVISVAEL 69
                 5****************9 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.9e-05
                  HHHHHH--S----B-HHHH CS
    PF13202.1   3 dtFrafDlNgDGkIsreEL 21 
                  ++F  +Dl+gD  Isr+E+
  MMETSP0890-20130614|17344_1  91 KLFALLDLDGDAVISRQEF 109
                  68****************9 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06    0.0028       3      24 ..      50      71 ..      50      77 .. 0.89
   2 !   12.9   0.1   2.6e-05     0.072       4      27 ..      91     114 ..      89     125 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1e-06
                 H---GCC-------B---HHHH CS
    PF13405.1  3 reaFklfDkdgdGkidaeELrd 24
                 ++aF+lfD + dG i+ +EL  
  MMETSP0890-20130614|17344_1 50 NRAFDLFDANCDGVISVAELTF 71
                 589****************975 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.6e-05
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  ++F l+D dgd  i+++E+  a r
  MMETSP0890-20130614|17344_1  91 KLFALLDLDGDAVISRQEFCEAVR 114
                  89*****************99987 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.9e-11   1.1e-07       4      65 ..      51     112 ..      43     113 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.9e-11
    PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgsels..deevrevldyifkelDkngdGvlsfeEflqa 65 
                  +aF+l+D ++dg ++++eL+  +++++   +  ++++ ++  ++f+ lD++gd v+s++Ef++a
  MMETSP0890-20130614|17344_1  51 RAFDLFDANCDGVISVAELTFTARATSA-VTrlRGDIYNE-MKLFALLDLDGDAVISRQEFCEA 112
                  48****************8877777664.34585555554.377******************97 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     2e-05     0.055      31      48 ..      53      70 ..      48      75 .. 0.89
   2 !   11.2   0.0   6.7e-05      0.18      30      53 ..      92     115 ..      91     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
    PF13833.1 31 frefDtdgdGkisfeEFc 48
                 f++fD+++dG is +E  
  MMETSP0890-20130614|17344_1 53 FDLFDANCDGVISVAELT 70
                 99************9975 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6.7e-05
    PF13833.1  30 lfrefDtdgdGkisfeEFcvller 53 
                  lf ++D+dgd  is  EFc+++++
  MMETSP0890-20130614|17344_1  92 LFALLDLDGDAVISRQEFCEAVRD 115
                  899****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 1447.80
//
Query:       MMETSP0890-20130614|17388_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-26   90.8   0.0    7.9e-26   90.5   0.0    1.1  1  PF04495.9 GRASP55/65 PDZ-like domain


Domain annotation for each model (and alignments):
>> PF04495.9  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   5.8e-30   7.9e-26      55     137 ..       1      83 [.       1      84 [. 0.99

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 5.8e-30
    PF04495.9  55 PaakagLvpksDYiigadkgllkeeedlselvesheekelkLyvYnsetdevrevvvtpnrewGgegalGcdvgyGlLhriPe 137
                  Paa+agL+++sDYi+g+ ++ +++++dls+ + ++ ++++ +yvYn++tdevr   ++p+r+wGg+g lG +v++G+Lhr+P+
  MMETSP0890-20130614|17388_1   1 PAAAAGLKAESDYILGTAEQAFTDSDDLSRALLENLDRQIDVYVYNTDTDEVRVASLVPTRQWGGNGCLGANVAHGYLHRLPA 83 
                  9*********************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 439.88
//
Query:       MMETSP0890-20130614|17422_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-20   70.7   0.4      9e-10   38.0   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    7.4e-18   64.1   0.0    8.1e-18   64.0   0.0    1.0  1  PF13424.1  Tetratricopeptide repeat
    2.1e-12   45.9   1.2    2.2e-08   33.2   0.0    2.1  2  PF00515.23 Tetratricopeptide repeat
      1e-10   40.5   1.3    2.5e-07   29.9   0.1    2.1  2  PF07719.12 Tetratricopeptide repeat
    5.3e-10   38.6   0.1    6.7e-10   38.3   0.0    1.1  1  PF13414.1  TPR repeat
    1.3e-08   33.8   0.1    2.8e-05   23.4   0.0    2.1  2  PF13176.1  Tetratricopeptide repeat
    3.3e-07   30.6   0.0    3.9e-07   30.4   0.0    1.1  1  PF13432.1  Tetratricopeptide repeat
    2.1e-06   27.3   0.4    0.00096   19.0   0.0    2.8  2  PF13431.1  Tetratricopeptide repeat
    4.7e-06   26.6   0.1    0.00091   19.5   0.1    2.1  2  PF13428.1  Tetratricopeptide repeat
    4.7e-06   25.8   0.9     0.0013   18.2   0.1    2.1  2  PF13181.1  Tetratricopeptide repeat
     0.0018   18.3   0.1     0.0054   16.9   0.1    1.7  2  PF07721.9  Tetratricopeptide repeat
     0.0075   16.5   0.0       0.62   10.5   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   14.9   0.1        5.9    6.7   0.0    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
      0.066   13.1   0.2        2.2    8.2   0.0    2.1  2  PF12688.2  Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   9.9e-11   9.7e-08      18      42 .]       2      26 ..       1      26 [. 0.97
   2 !   38.0   0.0   9.2e-13     9e-10       1      38 [.      27      64 ..      27      65 .] 0.96

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 9.9e-11
    PF13374.1 18 yeeAlaleeealairrrllGddHPd 42
                 y+eA +l+e+a +i+++++G++HP+
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEIWKKVHGPNHPH 26
                 9***********************6 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 9.2e-13
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGd 38
                 +a+ lnnLAl+l+ +g+++eA++l+e+a +i ++ +G+
  MMETSP0890-20130614|17422_1 27 VATGLNNLALLLMIQGEHDEARPLYERAIEIDEKAYGP 64
                 6889*******************************998 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   8.3e-21   8.1e-18      21      78 .]       2      60 ..       1      60 [. 0.97

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 8.3e-21
    PF13424.1 21 ydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                 ydeA  lye+a+e+  +++g++hp +a+ lnnla l++ +g++deA++++e+A+ei+ek
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEIwKKVHGPNHPHVATGLNNLALLLMIQGEHDEARPLYERAIEIDEK 60
                 9*************88899*************************************986 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00011      0.11      17      30 ..       2      15 ..       1      18 [. 0.93
   2 !   33.2   0.0   2.2e-11   2.2e-08       2      32 ..      29      59 ..      28      60 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHH CS
   PF00515.23 17 ydeAleyyekALel 30
                 ydeA   ye+A+e+
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEI 15
                 9************8 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 2.2e-11
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  2 kalynlGnaylklgkydeAleyyekALelnP 32
                   l+nl+++++ +g++deA   ye+A+e+++
  MMETSP0890-20130614|17422_1 29 TGLNNLALLLMIQGEHDEARPLYERAIEIDE 59
                 579**************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0006      0.58      17      30 ..       2      15 ..       1      15 [. 0.94
   2 !   29.9   0.1   2.6e-10   2.5e-07       1      33 [.      28      60 ..      28      61 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHHH CS
   PF07719.12 17 yeeAleafekAlel 30
                 y+eA+ ++e+A+e+
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEI 15
                 9***********96 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 2.6e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                 a +l+nl+l+++ +g+++eA+ ++e+A+e+d +
  MMETSP0890-20130614|17422_1 28 ATGLNNLALLLMIQGEHDEARPLYERAIEIDEK 60
                 5689**************************976 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   6.9e-13   6.7e-10      19      68 ..       2      58 ..       1      59 [. 0.87

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 6.9e-13
    PF13414.1 19 ydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                 ydeA  +ye+A+e++     pn++     ++nlAl+++ +g++ +eA+  ye+A+e+d
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEIWkkvhgPNHPHvatGLNNLALLLMIQGEH-DEARPLYERAIEID 58
                 9*************88888866644445*************75.9************9 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013       1.2      15      33 ..       2      20 ..       1      23 [. 0.83
   2 !   23.4   0.0   2.8e-08   2.8e-05       2      32 ..      31      61 ..      30      65 .] 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
    PF13176.1 15 yekAielyeraLaltkdpl 33
                 y++A  lyera++++k   
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEIWKKVH 20
                 99********999887665 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.8e-08
    PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdp 32
                 l+nLa l + +g++++A  lyera+++++  
  MMETSP0890-20130614|17422_1 31 LNNLALLLMIQGEHDEARPLYERAIEIDEKA 61
                 89*********************87777655 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     4e-10   3.9e-07      13      61 ..       2      58 ..       1      63 [. 0.94

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 4e-10
    PF13432.1 13 ydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraalala 61
                 ydeA +++e+a++ +        P+ a  l +la +l+ +g++deA+ l+++a++++
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEIWkkvhgpnhPHVATGLNNLALLLMIQGEHDEARPLYERAIEID 58
                 9*******************99999****************************9776 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.9e-07   0.00096       1      33 [.       8      48 ..       8      49 .. 0.87
   2 ?    5.4   0.1     0.022        21       1      10 [.      50      59 ..      50      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 9.9e-07
    PF13431.1  1 lyekaleld.....Pnn...adaynnLAelllnnGdleeAe 33
                 lye+a+e+      Pn+   a  +nnLA+ll  +G+++eA+
  MMETSP0890-20130614|17422_1  8 LYERAIEIWkkvhgPNHphvATGLNNLALLLMIQGEHDEAR 48
                 799*****76777777777799999***************8 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.022
    PF13431.1  1 lyekaleldP 10
                 lye+a+e+d 
  MMETSP0890-20130614|17422_1 50 LYERAIEIDE 59
                 7******996 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.022        22      17      35 ..       2      25 ..       1      31 [. 0.71
   2 !   19.5   0.1   9.3e-07   0.00091       4      32 ..      31      59 ..      28      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.022
    PF13428.1 17 pdeAiallrrala.....laPdda 35
                 +deA  l++ra++     ++P+++
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEiwkkvHGPNHP 25
                 799999999999855554556555 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 9.3e-07
    PF13428.1  4 llalarallalGdpdeAiallrralalaP 32
                 l  la +l+ +G++deA+ l++ra++ + 
  MMETSP0890-20130614|17422_1 31 LNNLALLLMIQGEHDEARPLYERAIEIDE 59
                 5679*********************9876 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0068       6.6      17      30 ..       2      15 ..       1      15 [. 0.94
   2 !   18.2   0.1   1.3e-06    0.0013       3      32 ..      30      59 ..      28      62 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0068
                 HHHHHHHHH---HH CS
    PF13181.1 17 ydkAkeylekalel 30
                 yd+Ak  +e+a+e+
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEI 15
                 9***********97 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.3e-06
                 -TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelkp 32
                  ++nl+++++  G++d+A   +e+a+e++ 
  MMETSP0890-20130614|17422_1 30 GLNNLALLLMIQGEHDEARPLYERAIEIDE 59
                 589*************************97 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.1     4e+03      17      26 .]       2      11 ..       2      11 .. 0.82
   2 !   16.9   0.1   5.5e-06    0.0054       4      26 .]      31      53 ..      28      53 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 4.1
                 ----HHHHHT CS
    PF07721.9 17 ldeAraller 26
                 +deA  l er
  MMETSP0890-20130614|17422_1  2 YDEAKPLYER 11
                 6999999887 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.5e-06
                 H---HHHHHH-------HHHHHT CS
    PF07721.9  4 llaLArallalGdldeAraller 26
                 l +LA +l  +G++deAr l er
  MMETSP0890-20130614|17422_1 31 LNNLALLLMIQGEHDEARPLYER 53
                 569*****************997 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.063        62      16      28 ..       2      14 ..       1      19 [. 0.78
   2 !   10.5   0.0   0.00063      0.62       6      28 ..      34      56 ..      33      58 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHH CS
    PF13174.1 16 tdeAlealerlik 28
                 +deA+ ++er i+
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIE 14
                 6888888888886 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00063
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                 lal++  +g++deA+ ++er i+
  MMETSP0890-20130614|17422_1 34 LALLLMIQGEHDEARPLYERAIE 56
                 665555578***********997 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.006       5.9      21      37 ..       2      18 ..       1      23 [. 0.89
   2 ?    6.4   0.0    0.0072         7      19      34 ..      42      57 ..      40      62 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.006
                 HHHHHHHHHHHHHHHHH CS
   PF04212.13 21 yeeAlelYkeAlelLlq 37
                 y+eA  lY+ A+e++ +
  MMETSP0890-20130614|17422_1  2 YDEAKPLYERAIEIWKK 18
                 99***********9876 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0072
                 T-HHHHHHHHHHHHHH CS
   PF04212.13 19 gkyeeAlelYkeAlel 34
                 g+++eA  lY+ A+e+
  MMETSP0890-20130614|17422_1 42 GEHDEARPLYERAIEI 57
                 5666666677766665 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.05        48      18      29 ..       3      14 ..       1      34 [. 0.90
   2 ?    8.2   0.0    0.0022       2.2      14      29 ..      41      56 ..      28      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.05
    PF12688.2 18 akAvplYrrAla 29
                 ++A plY+rA++
  MMETSP0890-20130614|17422_1  3 DEAKPLYERAIE 14
                 799******986 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0022
    PF12688.2 14 tGeeakAvplYrrAla 29
                  Ge+++A plY+rA++
  MMETSP0890-20130614|17422_1 41 QGEHDEARPLYERAIE 56
                 69************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.85
# Mc/sec: 183.25
//
Query:       MMETSP0890-20130614|17421_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-38  130.4   0.0    3.5e-38  130.0   0.0    1.1  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   2.6e-42   3.5e-38       2     139 ..       9     147 ..       7     148 .. 0.88

  Alignments for each domain:
  == domain 1    score: 130.0 bits;  conditional E-value: 2.6e-42
                  HHHHHHHHHHS-TTCEEEEEEE..T.TECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHT.HHHHHHHHHHH CS
   PF00179.21   2 lqkelkelskkkpegikaevve..d.snllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkkn.reeykkkvkek 139
                  l+kel e    +  g++a+vv   d +nll w+++++gp++t + +g+F+l+ik  +eYP+ PP+ kf+t+ifHPnv+ +tGe+cld+Lk+e Wspa+tl s  l+i s+la+pn espln +a +ll+    ++++k+v+++
  MMETSP0890-20130614|17421_1   9 LRKELVE---IERGGYDADVVLvpDpENLLVWRAFLRGPDDTSFSDGVFELEIKATPEYPMVPPTAKFITRIFHPNVHeKTGEVCLDVLKSE-WSPAWTLASATLAIRSILAHPNAESPLNCDAGNLLRAGdCDTFNKTVRKY 147
                  5566664...44444444444433248***************************************************************88.************************************987899***99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.72
# Mc/sec: 649.01
//
Query:       MMETSP0890-20130614|17418_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-21   76.7   0.0      7e-21   75.0   0.0    1.8  2  PF13472.1  GDSL-like Lipase/Acylhydrolase family
    6.3e-13   48.9   0.3    1.3e-12   47.9   0.2    1.5  1  PF00657.17 GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
       0.25   10.6   0.0       0.25   10.6   0.0    1.7  2  PF04478.7  Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.5e-24     7e-21       1     179 []      38     224 ..      38     224 .. 0.84
   2 ?   -1.5   0.0      0.46   2.1e+03      15      73 ..     752     810 ..     744     813 .. 0.76

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 1.5e-24
    PF13472.1   1 valGDSitaGygapsg.egyadrlaaqlg.agvevvnlgcsGattrdg..larlea.dvla.llaadpdlvtltlGgNDlgfgdrtdaslekyeanlaaildalreaa..pvllvgyppvlpadrepp.aaglrdaldalnealaeaAaaygvtyvdlaaafadhegwdkdlla..pdglHPnaaGyaai 179
                  ++lGDSit+G g++ g  +y++ l++ lg   ++v n+g +G+ +  g   +r  +  + + +l  ++ + +l+ G+ND+  + ++     +++ ++ +i+ ++++    p++++g+pp   + +e     ++     +l+++++e+A+++g+ y + ++ f + e+w +  +   +dglHPna+Gy ai
  MMETSP0890-20130614|17418_1  38 ACLGDSITYGEGDDAGyLSYPTNLENILGkGSFNVKNYGKGGSHIIPGprNYRVKHsNTYNsALSSNAAIYLLQWGTNDASID-TW--NETQFKIAYSEIINEISSLPqePIVVLGVPPPYVYEYEEIgLPEFHPVNTDLDRIYREIAEQHGLFYSNHYEYFGKFENWNRAWYDipDDGLHPNADGYMAI 224
                  59**********98666********9855277************999844333333422223489*****************6.44..4579************666666******99777766666679999999********************************98766699***********886 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.46
    PF13472.1  15 sgegyadrlaaqlgagvevvnlgcsGattrdglarleadvla.llaadpdlvtltlGgND 73 
                  ++ +y ++l +  +++++ + ++++  ++ d+  + ++ + +   +++p +v l +  ND
  MMETSP0890-20130614|17418_1 752 QESSYLSDLLRSSNSPLSHIVAAFNPQNSPDVSLTNPE-QEEeKNHETPGIVDLDIAQND 810
                  4578999999999999*********9999999643333.334467888888888888887 PP

>> PF00657.17  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2   2.9e-16   1.3e-12       1     232 [.      37     226 ..      37     227 .. 0.74

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2.9e-16
                  EEEE--CCCHT.--S-CCCSHHHHHHHHCCSCCHHHHHCTTEEEEE-------HH......HHHHHHHHHCCHHHHHHHHHH-ESEEEEE---TTT..ECE.SSSEEEHHHHHHHHHHHHHHHHTTTEEEEEEEEEECCHHH.......HHHTHCCHH......HHHHHHHHHHHHHHH.....HHHHHCTEEEEEHHHHHHHCHHHGGGHHHTCCCSSTTSB-CCCHHHHHH CS
   PF00657.17   1 ivafGDSltdg.ggdsngggwlaglanrltsalrlnarppgvdvfnrgisGrtsdgrlvqlesqalnllqelkllldkdskkspdlvtiqiGaNDllteslkntqnasvpevrdnlrslikrlylngarlivlltfvltnlpplgqlpsarskkvdakgclerlneavadfnellkklaeqlrkdlvkeanvkyvDiysifqeldglqnpenssylfwDgfHptekghkavae 232
                  i ++GDS+t+g g d +  +++ +l+n l            + v n+g +G  +           +n+  + ++ + ++    ++++++q G+ND++   ++n+     ++++ +++++i+++ + ++       +v+++ p     p+++   +++ + l ++  +++d + +++++aeq+      ++  +y+  ++ + +   + +      +  Dg+Hp++ g+ a+a+
  MMETSP0890-20130614|17418_1  37 IACLGDSITYGeGDDAGYLSYPTNLENIL--------GKGSFNVKNYGKGGSHIIPG-------PRNYRVKHSNTYNSALSSNAAIYLLQWGTNDAS-IDTWNE-----TQFKIAYSEIINEISSLPQE-----PIVVLGVP-----PPYVY--EYEEIGLPEFHPVNTDLDRIYREIAEQHGLF--YSNHYEYFGKFENWNRA--WYD------IPDDGLHPNADGYMAIAQ 226
                  789********444444445555555555........56678888888888885533.......3667888888999999999************96.445555.....********************.....66666666.....33333..445588888999*************664444..22455666666666655..554......9************99996 PP

>> PF04478.7  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.4       2.4   1.1e+04      26      39 ..     433     446 ..     426     450 .. 0.75
   2 ?   10.6   0.0   5.4e-05      0.25      23      76 ..     613     664 ..     597     676 .. 0.69

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 2.4
    PF04478.7  26 tytptataspskks 39 
                  ty pt+t++ps++ 
  MMETSP0890-20130614|17418_1 433 TYEPTSTSEPSHEP 446
                  89999999988754 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 5.4e-05
    PF04478.7  23 ttitytptataspskkskehGLskknkniviGcvvGigvPlllvilvliyifCi 76 
                  t + +tpt+  + +   +++  s+ n  i+ G +vG g  +++vil+l+++   
  MMETSP0890-20130614|17418_1 613 TFVSLTPTSDPTFEVGASSKKSSSDNTAILAGSIVG-GLFIFIVILILLFVC-A 664
                  3344555554444444444556899***********.999999999999974.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:01.15
# Mc/sec: 1681.58
//
Query:       MMETSP0890-20130614|17437_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-68  229.3   0.0    5.5e-68  228.6   0.0    1.3  1  PF00108.18 Thiolase, N-terminal domain
    5.5e-38  129.0   0.0    1.4e-37  127.7   0.0    1.7  1  PF02803.13 Thiolase, C-terminal domain
    8.7e-05   22.0   0.2    0.00028   20.3   0.1    1.9  2  PF00109.21 Beta-ketoacyl synthase, N-terminal domain
     0.0078   14.5   0.0      0.014   13.7   0.0    1.4  1  PF07451.6  Stage V sporulation protein AD (SpoVAD)


Domain annotation for each model (and alignments):
>> PF00108.18  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.6   0.0   1.6e-71   5.5e-68       3     264 .]      17     290 ..      15     290 .. 0.94

  Alignments for each domain:
  == domain 1    score: 228.6 bits;  conditional E-value: 1.6e-71
                  -EEEEEE-EE---------TTS-HHHHHHHHHHHHHHH-TCHHHCEEEEEE---S-STT--HHHHHHHHHSSS-TTSEEEEEE-GGG-HHHHHHHHHHHHH----SEEEE-----CCCH-CCE.......-----CEEEEEHCH.................H.CCCCCTCGSB---HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHH---HTTTEE-EEE..-----EEE-S-TTS-TT--HHHHCCS-BSSS-.-----B---B-------EEEEEEEHH CS
   PF00108.18   3 dvvivsaaRtpigsfkgslkdlsaedLgaavlkallekakvkaeevdevilGnVlqagegqnpaRqaalkaglpeevpaltvnkvCgSglkavalaaqkiaageadivvagGvEsmsnapylle..asraglklgkaklvdsll.................kdgladakneihmGitaenvakkfkisReeqDefAlrSqqkakkAqkeGkfkdeivPvkvktrkgkekvvdkDegirkettlekLaklkpaFkk.eeGtvtAgnaSqlnDGaaavllmses 264
                   vv++++aR+p+ +++  ++dl+a+dL+++++ +l++k +++ + +d+v  G+V+q+  ++n aR+aa+ agl++++pa+tv+++C+S++ a+ ++++ki+a +a+i++agG+E  s+ap++++   ++  ++ +k+  ++ ll                  +++a++++ + mG++++++a +f+isR++qD++ lrS+++a+kA ++G +++ei+P + +  ++      k++gir  +t e+LaklkpaF k ++Gt tA+n+S l+DGa+a+++mses
  MMETSP0890-20130614|17437_1  17 RVVLIDGARIPFSVSNSRYEDLMAVDLARMAIGGLMNKIGLDGSMIDYVLYGTVIQEPRTSNLAREAAMHAGLSKNIPAHTVTMACISSNAALCQGVEKIMANQANIILAGGCETFSDAPIRYSrpIRKRLMQASKIFAKQGLLgglrllqglkfkdfapeAPQIANFTTGEVMGHSSDRMACRFGISRKDQDDYTLRSHSLAQKAHDDGLYNEEIIPPEGS--DD-----IKENGIRV-STPEALAKLKPAFIKgPQGTHTAANSSFLTDGASAAIIMSES 290
                  79************************************************************************************************************************9865556666666655555555****************9999******************************************************9975..33.....3789****.9************98458**********************96 PP

>> PF02803.13  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.0     4e-41   1.4e-37       1     123 []     297     437 ..     297     437 .. 0.99

  Alignments for each domain:
  == domain 1    score: 127.7 bits;  conditional E-value: 4e-41
                  ---SEEEEEEE-----G.GG-----HHHHHHHHHH----CCC-S-BEE--SBHHHHHHHHHHTT-GG.................CCBS-----------------HHHHHHHHHHHHT..----EE---------EEEEE- CS
   PF02803.13   1 lkplakirsfatvgvdp.eilglgPayaikkalkkaGltvedidlfEinEAFaaqalavakeldldl.................ekvNvnGGaialGHPlGasGaRilvtllselkkeggklglaalCigggqgvalviek 123
                  lkp+a i++f   ++dp e++ lgPaya++++l+++ l+++d+d++Ei+EAFa+q+l+++ +ld+d+                 +kvN +GG+++lGHP+ a+G+R+++t++++l ++++kl+l+++C+ gg g+a+++e+
  MMETSP0890-20130614|17437_1 297 LKPKALIKDFCFIATDPfEQMLLGPAYATSHLLHRNQLRLSDLDVIEIHEAFAGQVLSNFAALDSDKfasdylngmqklgpidiDKVNTQGGSVSLGHPFAATGTRLVTTAANRLIRDQSKLALVTACADGGLGHAMLLER 437
                  589***************************************************************************************************************************************986 PP

>> PF00109.21  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   8.1e-08   0.00028     169     207 ..      94     132 ..      67     157 .. 0.86
   2 ?   -2.8   0.0      0.94   3.2e+03     104     134 ..     183     215 ..     175     231 .. 0.55

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 8.1e-08
                  --BEEE-GGGHHHHHHHHH.HHHH----SEEEE------ CS
   PF00109.21 169 psvtvdtacsSslvalhaavqslregeadlalaGGvell 207
                  p++tv+ ac Ss +al+++v+++  ++a+++laGG+e+ 
  MMETSP0890-20130614|17437_1  94 PAHTVTMACISSNAALCQGVEKIMANQANIILAGGCETF 132
                  99**********************************975 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.94
                  ---......HTTGCEEEB------HHHHHCCCH CS
   PF00109.21 104 gldpesl..egsdrvgvfiGsgigdyaelqald 134
                  +++  ++  ++sdr+++  G++++d++++++++
  MMETSP0890-20130614|17437_1 183 NFTTGEVmgHSSDRMACRFGISRKDQDDYTLRS 215
                  555555543334478888888877553333333 PP

>> PF07451.6  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     4e-06     0.014      53     149 ..      42     145 ..      29     196 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4e-06
    PF07451.6  53 klleeavkkalkkaglkkedidyllaGDLlnqlisssfaar.......elkiPflglygACstsaeslalaallvdggfadkvlaatssHfaaaekqfRfPley 149
                   l + a+   ++k gl+ + idy+l G +++   +s++a +       + +iP   +  AC +s  +l+ +   + ++ a+ +la+ +  f+ a  ++  P+  
  MMETSP0890-20130614|17437_1  42 DLARMAIGGLMNKIGLDGSMIDYVLYGTVIQEPRTSNLAREaamhaglSKNIPAHTVTMACISSNAALCQGVEKIMANQANIILAGGCETFSDAPIRYSRPIRK 145
                  67889999***********************99999887552111222468**************************************999999988888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:00.94
# Mc/sec: 1124.25
//
Query:       MMETSP0890-20130614|17455_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.60
# Mc/sec: 287.56
//
Query:       MMETSP0890-20130614|17465_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-07   29.2   2.9       0.22   11.3   0.0    6.4  6  PF00400.27 WD domain, G-beta repeat
     0.0058   16.0   0.0        1.3    8.4   0.0    3.2  3  PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   3.2e-05      0.22      14      38 ..     144     169 ..     141     170 .. 0.92
   2 ?   -2.1   0.0      0.54   3.7e+03      13      30 ..     188     208 ..     187     209 .. 0.77
   3 ?    2.7   0.5     0.016   1.1e+02      15      39 .]     247     305 ..     221     305 .. 0.57
   4 !    5.4   0.0    0.0024        17       2      38 ..     311     346 ..     310     347 .. 0.93
   5 ?   -1.6   0.0      0.38   2.6e+03      13      27 ..     363     377 ..     361     381 .. 0.71
   6 ?    2.0   0.0     0.029     2e+02      12      29 ..     411     428 ..     405     438 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.2e-05
                  EEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27  14 Vtcvafspd.gpllasgSrDgtirlW 38 
                  + +v+fs d ++l+++++ D+ irl+
  MMETSP0890-20130614|17465_1 144 IQAVDFSGDiSNLMLTAGLDKQIRLF 169
                  779*********************97 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.54
                  SEEEEEEESS...STEEEEEE CS
   PF00400.27  13 pVtcvafspd...gpllasgS 30 
                  p+ c af+     ++ +a ++
  MMETSP0890-20130614|17465_1 188 PILCAAFCGKkhnSNKIAASG 208
                  688999998888878888776 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.016
                  EEEEEESS..................................STEEEEEETTSEEEEEE CS
   PF00400.27  15 tcvafspd..................................gpllasgSrDgtirlWd 39 
                  tc+afs +                                  + +l  +++D  ++ Wd
  MMETSP0890-20130614|17465_1 247 TCLAFSVPngriltcdprnglwshselringttraltfdyqnSLYLYAAGSDAQVYSWD 305
                  45555555333333333333333334444444444444444566666666666666665 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0024
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                   c++++r    ++t+   +++   la +S+ g + ++
  MMETSP0890-20130614|17465_1 311 RCLHKFRDPGQSITSALAAHN-GKLAVASESGIVNIF 346
                  69*******************.********9999987 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 0.38
                  SEEEEEEESSSTEEE CS
   PF00400.27  13 pVtcvafspdgplla 27 
                  pV  +af+p+  ll+
  MMETSP0890-20130614|17465_1 363 PVDRLAFHPTEDLLV 377
                  566799***977776 PP

  == domain 6    score: 2.0 bits;  conditional E-value: 0.029
                  SSEEEEEEESSSTEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasg 29 
                  + V++  fsp g +la g
  MMETSP0890-20130614|17465_1 411 HYVSATTFSPYGDFLAIG 428
                  789999**********98 PP

>> PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.13   8.9e+02      32      43 ..     163     174 ..     155     175 .. 0.83
   2 ?    2.9   0.0     0.011        73       8      30 ..     358     380 ..     355     383 .. 0.89
   3 !    8.4   0.0    0.0002       1.3      13      38 ..     411     437 ..     400     441 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.13
    PF12894.2  32 kgelalyRlnwq 43 
                  + ++ l+R +++
  MMETSP0890-20130614|17465_1 163 DKQIRLFRIDGN 174
                  678******986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.011
    PF12894.2   8 knlparvkfiswcPtmDLiAlat 30 
                  +nl  +v+++++ Pt DL+ l +
  MMETSP0890-20130614|17465_1 358 TNLTTPVDRLAFHPTEDLLVLSS 380
                  588999*************9976 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0002
    PF12894.2  13 r.vkfiswcPtmDLiAlatekgelaly 38 
                  + v++ +++P  D +A++++ g ++ly
  MMETSP0890-20130614|17465_1 411 HyVSATTFSPYGDFLAIGNDRGRVLLY 437
                  259999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 1234.40
//
Query:       MMETSP0890-20130614|17490_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-112  376.0   0.2   1.4e-112  375.6   0.1    1.1  1  PF00224.16 Pyruvate kinase, barrel domain
    6.5e-07   28.7   0.0    1.6e-05   24.3   0.0    2.7  2  PF02887.11 Pyruvate kinase, alpha/beta domain
    0.00014   20.6   0.4     0.0003   19.6   0.3    1.6  1  PF03328.9  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PF00224.16  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.6   0.1  3.2e-116  1.4e-112       4     340 ..       9     356 ..       6     363 .. 0.92

  Alignments for each domain:
  == domain 1    score: 375.6 bits;  conditional E-value: 3.2e-116
                  SEEEEEE--TTTSHHHHHHHHH----EEEEETT---HHHHHHHHHHHHHHHHTTTTS-EEEEE----------B....-----SB------EEEEE--CCCTTB--TTEEE-S-TTHHHHS----EEEE----EEEEEEE----E.EEEEEEE---B------B---------SS-HHHHHHHH---TT--SEEEETTE-SHHHHHHHHHH-------S..E........EEEEE-S----TTHHHHHHH----EEE-------S-CCCHHHHHHHH---TTT-----EEESSTTGGGGTSSS--CHHHHHHHHHHH----EEEE---------HHHHHHHHHHHHHHHHH CS
   PF00224.16   4 tkivctlGPasesvekleklieaGlnvvRlnfshGsheehkeridnvreaeeklgkkvaillDtkGpeiRtgll....kdgkkeielkegdkllvstdeklkkegdkekiavdyknlvkdvevGktilvdDGvlslkvlevddekelkvevenegvlssrkgvnlpgtkvdlpalsekDkadlkfgvkqgvdliaasfvRkaedvkevRevleekgkei..k........iiakienqegvenldeileasdgimvaRGDlGieipaekvvlaqkllikkcnlagkpvitatqmlesmiknPrptRaevsDvanavldGaDavmLsgetakGkyPveavkamaevaleaek 340
                  tk+v+t+GP+se+ e l+k ++aG++ +Rlnfsh + ee   r+ n+ ++    g+ va +lDt+GpeiR g l    ++ k+++el+e ++l+++td+k+ ++g+++ ++v+y++l+++v++G++il+dDG++ ++v++v + + +k+++ n+g l++rkgvnlpg  ++lpa+sekDkad+++ v++g+dliaasfv  a+ v e+ + + +++++   +        ii kie+ e+++nldei+ +sdgimvaRGDlG+e+p  +vv +qk +++kc+++  pvi+atqml+sm  nPrptRaev+Dv+navl+ aD vmLsgeta+GkyP  ++ ++ ++++++e 
  MMETSP0890-20130614|17490_1   9 TKLVSTIGPSSEEYEPLSKCVAAGMSTMRLNFSHATREEFDLRMSNLSKVP--GGEYVARMLDTRGPEIRMGGLaicaENRKAKLELNEDAELILTTDTKIDGHGNANLMYVNYSKLCTKVKPGDQILLDDGAIVVQVESVGEFE-VKTRIMNGGLLGERKGVNLPGIPLELPAMSEKDKADIQLCVEHGIDLIAASFVHDAAGVLEIMDFVTKTARKYpeQypnferpwIIPKIESLEAIRNLDEIIAVSDGIMVARGDLGVEVPLVQVVQYQKDIVAKCRAMATPVIVATQMLDSMSANPRPTRAEVADVTNAVLESADGVMLSGETAAGKYPDLVISTQRDICKTSEV 356
                  89********************************************98775..5788*************98652222567789*******************************************************998877.*************************************************************99988776643212122333444*********************************************************************************************************************9986 PP

>> PF02887.11  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.06   2.8e+02      85     115 ..      87     118 ..      40     120 .. 0.84
   2 !   24.3   0.0   3.5e-09   1.6e-05       4      68 ..     382     449 ..     379     467 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.06
                  HHTTS.--SSSEEEEEE-----------EEEE CS
   PF02887.11  85 lkkgl.ikkgdevvvtaglpfgtaggtntikv 115
                   k++l ++++ e+++t  +++   g +n++ v
  MMETSP0890-20130614|17490_1  87 RKAKLeLNEDAELILTTDTKIDGHGNANLMYV 118
                  56667789999*****************9987 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 3.5e-09
                  HHHHHHHHHHHHT-SEEEEE--..---HHHHHHHT--SSEEEEEES-HHHHH--T.EEE--ETTE-SH CS
   PF02887.11   4 iaeaaveaAkelgakaIvvlte..sGstarlvskyrpgvpIlavtpseetarqla.lvwGvhplvgke 68 
                  +a aa  a + ++a+aI++l +   G  a++++   p+vp++a+  s+++arql+ l++Gv+pl++++
  MMETSP0890-20130614|17490_1 382 LAAAALAAQRATKASAIIALIDhpEGILAKQLAAGLPDVPVIALVSSPRLARQLSgLFRGVFPLILPD 449
                  5666666666678999999987336999***********************************87765 PP

>> PF03328.9  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   6.6e-08    0.0003      75     215 ..     185     327 ..     178     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.6e-08
                  HHHGG.HHHTT--EEEESS--SHHHHHHHHHHTSHTT-----...CHHH-EEEEB--SHHHHHTHHHHHTSTTEEEEB---HHHHHH---TS---SHHHHHHHHHHHHHHHH---EEE..B-SSHHHHHHHHHHHH-B-B---HH CS
    PF03328.9  75 kqdle.vldagaqgvlvPkvetaeevrevvkilrypekgirg...anketcllaqiESaegvknadeIaavegldgvalGaeDlsadlglkrspegpevleartrilaaakaagiaaldtvaldvddaegflaegalivalgfdg 215
                  k d++  ++ g++ +   +v  a+ v e+  ++ +  +       + ++  ++  iES e++ n+deI+av   dg++++  Dl +++ l +  + ++   a +r +a+      ++ld++ ++ + +++ +a+++++v  + dg
  MMETSP0890-20130614|17490_1 185 KADIQlCVEHGIDLIAASFVHDAAGVLEIMDFVTKTARKYPEqypNFERPWIIPKIESLEAIRNLDEIIAVS--DGIMVARGDLGVEVPLVQVVQYQKDIVAKCRAMATPVIVATQMLDSMSANPRPTRAEVADVTNAVLESADG 327
                  567888999999999999999999999988888777644444666778889*******************97..899999****9999888888888888888888888887778888888877777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:00.77
# Mc/sec: 1518.73
//
Query:       MMETSP0890-20130614|17515_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-83  277.2   0.0    9.6e-83  277.0   0.0    1.0  1  PF02167.10 Cytochrome C1 family
    0.00012   22.0   0.0    0.00028   20.8   0.0    1.7  1  PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.018   15.7   0.2      0.039   14.6   0.1    1.7  1  PF00034.16 Cytochrome c


Domain annotation for each model (and alignments):
>> PF02167.10  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.0   0.0   2.1e-86   9.6e-83       1     218 [.      48     266 ..      48     267 .. 0.99

  Alignments for each domain:
  == domain 1    score: 277.0 bits;  conditional E-value: 2.1e-86
                  -S---------HHHHH---HHHHHTTTTT---TT-BGGGSS------HHHHHHHH-------....S---------TTSB---..........----------TTTGGG-----HHHHHHH-------TT----..----SS------S---S-SS-SS---------HHHHHHHHHHHHHHHH-TTHHHHHH---HHHHH---HHHHHHHHHHHHCST CS
   PF02167.10   1 lsfagifgsfDkaslqrGaqvykevCsaCHslkyvryrrlaeglglteeevkalaaeyevkd.pddtgemeeRpgkvadklpsplaneeaakaanggaapPDLsliakaRaggadYiyslLtgyeedpeavevreggyyNkyfpggviaMpkpLsdgqveyedgteatvdqmakDvvaFLawaaePkleeRkklglkvllflliltvllyllkkeiWkd 218
                  +s++g ++ fD ++++rG+qvykevC++CHs++++++r+l e   +teee+ka+a+e e++d p+d+gem+eRp k++d +p p+an+eaa+aan+ga+pPDLsli+kaR+ggadY+++lL+gy e+p+++++ +g yyN+yf+gg+i+Mp+pL+d+ v+y dgt+atv+qmakDv+ FLawaaeP+++eRkk+g+  +l l i ++++ ++k+  W++
  MMETSP0890-20130614|17515_1  48 WSHHGALRGFDAKAVRRGFQVYKEVCASCHSVNRLAFRNLVEYGAWTEEEAKAIAEEAEIMDgPNDEGEMFERPCKLSDSMPGPYANDEAARAANNGALPPDLSLIIKARHGGADYVFNLLNGYCEAPAGKQLLPGLYYNPYFAGGAIGMPAPLMDESVTYPDGTPATVSQMAKDVSVFLAWAAEPEHDERKKAGFRWILALSIAAIVAGFTKRFRWAP 266
                  8999**************************************889****************************************************************************************************************************************************************************86 PP

>> PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.2e-08   0.00028       2      43 ..      61     104 ..      60     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.2e-08
                  HCH---HHHHHCTTTTH---TT-.--TTSH.HHHHHHHHCHHH- CS
    PF13442.1   2 aaaaGaalynanCaaCHgsggag.pslagd.awepdalkkiikn 43 
                  a+++G ++y++ Ca+CH+ +  +  +l    aw++++ k+i+++
  MMETSP0890-20130614|17515_1  61 AVRRGFQVYKEVCASCHSVNRLAfRNLVEYgAWTEEEAKAIAEE 104
                  6899**************88888888886679999999988875 PP

>> PF00034.16  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   8.7e-06     0.039       2      31 ..      63      87 ..      62     142 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.7e-06
                 --HHHHHC-TTTTT--SSS----S...--H CS
   PF00034.16  2 arGkelftanCaaCHgaggggakqggapnl 31
                  rG +++++ Ca+CH+++  +      +nl
  MMETSP0890-20130614|17515_1 63 RRGFQVYKEVCASCHSVNRLAF-----RNL 87
                 6999***99********98873.....444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|17536_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   30.5   3.5    1.4e-05   25.2   1.3    2.4  2  PF13634.1 Nucleoporin FG repeat region
  ------ inclusion threshold ------
      0.085   12.8  12.3       0.23   11.4   3.3    2.9  2  PF03700.8 Sorting nexin, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13634.1  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   1.3     2e-09   1.4e-05       9     113 ..       3     109 ..       1     110 [. 0.82
   2 !    4.8   0.0    0.0042        28      42      59 ..     116     131 ..     111     133 .] 0.41

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2e-09
    PF13634.1   9 aatsgglFG.......skpatggglFGa....sasqtastaggglFGssntkatsttggglFGssatttasstsgglFGsstattqtttggglFGqaqaaqtqqssssttaggglF 113
                   +tsgglF        ++++ +g lF a    s+++ta++++++lF++ +    + + +  FG s+++ +s +++glF +         +   FG++++++ +++s+s t ++glF
  MMETSP0890-20130614|17536_1   3 EKTSGGLFAddepdplKSTSESGDLFTAvpvsSPKPTATPTKSSLFSKEEI---TESNSVFFGDSKKSVSSLAKKGLFDDDD------DNDDFFGATKSKKVTDKSPSLTIKKGLF 109
                  68999***9655544434458899999987765555788899*****9986...4677999*****999999*******976......7899********9999999999999999 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0042
    PF13634.1  42 lFGssntkatsttggglF 59 
                  lFGs++t   + +ggglF
  MMETSP0890-20130614|17536_1 116 LFGSKKT--GKRSGGGLF 131
                  3333332..122233333 PP

>> PF03700.8  Sorting nexin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.3   3.4e-05      0.23      21      61 ..      19      59 ..       7      92 .. 0.75
   2 ?    0.9   3.3     0.061   4.2e+02      21      58 ..      78      99 ..      60     122 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.4e-05
    PF03700.8 21 deeeegEdlFtsavsklessssspdeaslpseegStksngp 61
                  +  e+ dlFt++ + + +++ +p+++sl+s+e  t+sn  
  MMETSP0890-20130614|17536_1 19 KSTSESGDLFTAVPVSSPKPTATPTKSSLFSKEEITESNSV 59
                 4788999************************9999999864 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.061
    PF03700.8 21 deeeegEdlFtsavsklessssspdeaslpseegStks 58
                 d++++ +d F ++ sk+ ++                ks
  MMETSP0890-20130614|17536_1 78 DDDDDNDDFFGATKSKKVTD----------------KS 99
                 55555566665555543322................22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.80
# Mc/sec: 398.39
//
Query:       MMETSP0890-20130614|17547_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 828.74
//
Query:       MMETSP0890-20130614|17576_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-15   53.9   0.1    1.8e-10   40.1   0.0    2.3  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.04   12.8   0.0      0.066   12.1   0.0    1.3  1  PF05678.9  VQ motif


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   2.3e-05      0.16      10      39 .]       7      35 ..       1      35 [. 0.86
   2 !   40.1   0.0   2.6e-14   1.8e-10       5      39 .]      42      76 ..      39      76 .. 0.96

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-05
                 SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27 10 HtspVtcvafspdgpllasgSrDgtirlWd 39
                 H ++ + +++sp+    +  S+ ++ir+W+
  MMETSP0890-20130614|17576_1  7 HGNSARTLSWSPSNETQLATSE-NKIRIWN 35
                 559999*******999999999.9*****7 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 2.6e-14
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ++l gH+ +V ++a+s++g  l+s+S+D+t+rlWd
  MMETSP0890-20130614|17576_1 42 RELVGHEEFVASIAYSQNGMTLVSASADRTCRLWD 76
                 6799******************************9 PP

>> PF05678.9  VQ motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.7e-06     0.066       9      19 ..      35      45 ..      33      45 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.7e-06
    PF05678.9  9 htdpanFRalV 19
                 +td+++FR+lV
  MMETSP0890-20130614|17576_1 35 NTDTSEFRELV 45
                 8*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 267.42
//
Query:       MMETSP0890-20130614|17604_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.78
# Mc/sec: 190.48
//
Query:       MMETSP0890-20130614|17657_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-34  117.2   0.7    6.9e-34  116.6   0.5    1.3  1  PF01652.13 Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> PF01652.13  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.5     5e-38   6.9e-34       4     154 ..       2     173 ..       1     187 [. 0.86

  Alignments for each domain:
  == domain 1    score: 116.6 bits;  conditional E-value: 5e-38
                  CEEEEEEE..-HHCCTTTS-HHHH-EEEEECCECHHHHHHHCTSHGGGSS-SS-EE................EEEETT--SSTTTCCCH----EEEEEE--....-HHHHHHHHHHHH---TT---SSSB---EEEE---E....EEEEE-BS-TTHHHHHHH---HHHHHCT- CS
   PF01652.13   4 skWtlwyd..skskskksesyedslkevvtfdsveeFwslynnikkpseLplksdy................hlFkegikPmWEdpankkGGkwvirlkkks.kkeldelWeelllaliGesleeaedeicGvvlsvRkke....drisvWtknasdeeakkkigkklkevlel 154
                  ++W+lw +  s +ks +++++ d  +++ +f++veeFw++y +i+ ps+L    +                  lFk+gi P+WEd+an +GG+w +r + k+  + +d+ W++l+l l+Ge+++ a d+icG+ +  +++     +ri++W +  +d e ++++++++ +v+  
  MMETSP0890-20130614|17657_1   2 NTWVLWEQrsSDKKSMTAKEWADLQRKLFEFSTVEEFWRYYGHIPVPSQLFFDGRSrkrvgvppddryiesfSLFKKGIAPEWEDKANINGGEWNLRKSGKNpDEGVDDWWQNLVLGLVGETIDPA-DHICGARVVDKSNGkvfiYRIELWLRI-KDPEIIESLKNNMIQVMTE 173
                  79******5544444458********************************8777777888************************************9998887899*****************988.******98777665122257****996.8999999999999999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 626.99
//
Query:       MMETSP0890-20130614|17656_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   12.7   0.7      0.054   12.3   0.5    1.2  1  PF05559.6  Protein of unknown function (DUF763)
      0.049   14.1   0.7      0.077   13.4   0.5    1.3  1  PF01922.12 SRP19 protein
        3.8    7.4   8.7       0.71    9.7   3.3    1.7  2  PF07768.6  PVL ORF-50-like family


Domain annotation for each model (and alignments):
>> PF05559.6  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   1.2e-05     0.054     183     266 ..      47     138 ..      35     148 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.2e-05
    PF05559.6 183 saisgkkeeevlnlvdkeseearklivdlvregpskivreveelkeklkg..............eelelkekhevreedvklkrlkkvleaayelepe 266
                  s + gkk eevl++++++  +ar + +d+++e  +k  + ++++++  +                     ek++ ++ + ++k+ k +l++ ++++++
  MMETSP0890-20130614|17656_1  47 SLVGGKKWEEVLEVTQSKFLDARAASLDVMNEARAKSIELASTANKF-SDilaarvkerlaledI-----EKEDKYHATRQMKEGKVILQKKQKKKIK 138
                  45667999************************876655444444333.33355577766444331.....3333333333444444444444444444 PP

>> PF01922.12  SRP19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   1.7e-05     0.077      17      87 ..      79     147 ..      72     149 .] 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-05
                  ---S-CCC-BSS--HHHHHHHH..HH----EEE-TS-TTCCCTTS----EEES.--.......--HHHHHHHH CS
   PF01922.12  17 GRrvpkelaVenPtleeiaeal..kklglkvvveeekkyPrekfeeegrvrvelkeeavnekiktkkellkki 87 
                   R  + ela    ++++i  a   ++l l+++ +e+k +  +  ++eg+v  + k+   ++kik+kk+ + ++
  MMETSP0890-20130614|17656_1  79 ARAKSIELASTANKFSDILAARvkERLALEDIEKEDKYHATR-QMKEGKVILQKKQ---KKKIKKKKQHFLAV 147
                  566666777777778888776633777777777777888777.99********999...99999999877665 PP

>> PF07768.6  PVL ORF-50-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.8   3.6e+03      44      76 ..      19      24 ..       3      32 .. 0.45
   2 ?    9.7   3.3   0.00016      0.71      37      91 ..      91     146 ..      84     149 .] 0.82

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.8
    PF07768.6 44 dapkgvklkeyrelkksekikdeekeRelarkr 76
                 +                 k          + ++
  MMETSP0890-20130614|17656_1 19 E-----------------K----------IEQK 24
                 2.................1..........2222 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00016
    PF07768.6  37 weleealdapkgvklk.eyrelkksekikdeekeRelarkrrkeaelkRkkPhLfn 91 
                   +++++l a++  +l+ e  e++ + +  ++ ke +++ ++++++  k+kk h   
  MMETSP0890-20130614|17656_1  91 NKFSDILAARVKERLAlEDIEKEDKYHATRQMKEGKVILQKKQKKKIKKKKQHFLA 146
                  58999*****9999863455666666688889*******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1236  (0.0904037); expected 273.4 (0.02)
Passed bias filter:                      568  (0.0415448); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 502.90
//
Query:       MMETSP0890-20130614|17680_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.81
# Mc/sec: 174.55
//
Query:       MMETSP0890-20130614|17688_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-41  138.1   0.0    5.8e-16   57.6   0.0    2.7  3  PF13475.1 Domain of unknown function (DUF4116)
    0.00083   18.8   0.0        1.9    8.0   0.0    2.9  3  PF07892.6 Protein of unknown function (DUF1667)
  ------ inclusion threshold ------
      0.018   15.1   0.1        2.8    8.0   0.0    2.5  2  PF09575.5 Small spore protein J (Spore_SspJ)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.9e-17   8.8e-14       9      49 .]       2      42 ..       1      42 [. 0.97
   2 !   57.6   0.0   1.3e-19   5.8e-16       1      44 [.      19      62 ..      19      64 .. 0.98
   3 !   36.9   0.0   3.5e-13   1.6e-09       1      34 [.      44      77 .]      44      77 .] 0.98

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1.9e-17
    PF13475.1  9 vkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                 v+++g al+y+s+eLknD++++l+Av q+g+al ya  eL+
  MMETSP0890-20130614|17688_1  2 VTQYGRALEYASKELKNDRDFILAAVTQDGTALQYANRELK 42
                 789*********************************99997 PP

  == domain 2    score: 57.6 bits;  conditional E-value: 1.3e-19
    PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsya 44
                 Dr+++l+av+++g al+y++ eLk+++eivl+Av q+g+al+ya
  MMETSP0890-20130614|17688_1 19 DRDFILAAVTQDGTALQYANRELKKNREIVLAAVTQYGHALEYA 62
                 9******************************************8 PP

  == domain 3    score: 36.9 bits;  conditional E-value: 3.5e-13
    PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAv 34
                 +rEivl+av+++g al+y+   LknD+eivl+Av
  MMETSP0890-20130614|17688_1 44 NREIVLAAVTQYGHALEYARQGLKNDREIVLAAV 77
                 7********************************8 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00043       1.9       2      27 ..       7      32 ..       6      35 .. 0.86
   2 !    6.3   0.0    0.0015       6.6       4      25 ..      34      55 ..      31      61 .. 0.84
   3 ?    2.7   0.0      0.02        90       4      22 ..      59      77 .]      56      77 .] 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00043
    PF07892.6  2 rGeeYakkeltnpkriltstVkvegg 27
                 r  eYa kel+n ++ + + V  +g 
  MMETSP0890-20130614|17688_1  7 RALEYASKELKNDRDFILAAVTQDGT 32
                 789**************999987765 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0015
    PF07892.6  4 eeYakkeltnpkriltstVkve 25
                  +Ya++el++++ i+ + V   
  MMETSP0890-20130614|17688_1 34 LQYANRELKKNREIVLAAVTQY 55
                 69*************9999765 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.02
    PF07892.6  4 eeYakkeltnpkriltstV 22
                  eYa++ l+n + i+ + V
  MMETSP0890-20130614|17688_1 59 LEYARQGLKNDREIVLAAV 77
                 79************98766 PP

>> PF09575.5  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00062       2.8      21      33 ..       7      19 ..       3      20 .. 0.90
   2 ?    4.5   0.0    0.0076        35       5      33 ..      38      69 ..      34      70 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00062
    PF09575.5 21 gaLEdAgkaLkgD 33
                  aLE A+k+Lk+D
  MMETSP0890-20130614|17688_1  7 RALEYASKELKND 19
                 59*********99 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0076
    PF09575.5  5 nKdkgknseKdknavdg...aLEdAgkaLkgD 33
                 n++ +kn+e    av +   aLE A + Lk+D
  MMETSP0890-20130614|17688_1 38 NRELKKNREIVLAAVTQyghALEYARQGLKND 69
                 5566666666666666544499*9*9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 267.42
//
Query:       MMETSP0890-20130614|17767_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-49  166.9   1.4    1.9e-48  165.1   0.3    2.1  3  PF03224.9  V-ATPase subunit H
    1.7e-38  131.0   0.1    6.7e-38  129.1   0.0    2.0  2  PF11698.3  V-ATPase subunit H
    0.00033   20.2   0.7       0.34   10.6   0.0    3.8  4  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.018   14.9   0.0       0.21   11.6   0.0    2.9  2  PF02985.17 HEAT repeat
      0.045   13.9   1.2       0.51   10.5   0.0    3.1  4  PF13646.1  HEAT repeats
      0.063   12.6   0.1        1.1    8.6   0.0    2.1  2  PF04286.7  Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> PF03224.9  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.3   8.3e-52   1.9e-48      14     312 .]      28     351 ..      18     351 .. 0.90
   2 ?   -2.7   0.0         1   2.3e+03      25      44 ..     391     410 ..     386     430 .. 0.66
   3 ?   -0.3   0.0      0.18     4e+02     109     135 ..     452     478 ..     436     481 .. 0.85

  Alignments for each domain:
  == domain 1    score: 165.1 bits;  conditional E-value: 8.3e-52
    PF03224.9  14 kipWegyvrsqliseedlklikaldkkkkeqrakll..dedgpqyvklllnLlskltskedtlqyiLvlidd.llsedr.....srvqlflslakkeeqk......pfkpflk.llnrqddfivllalrilakllseskkksnklveeaLkrllsllksqlssssnevi...eiavrllqellrvkeyRelfveadgvstlisilr....sevasssrvglQlqYqvllclWlLsFe....keiaeelvkkklipllvdilkdsakEKvtRvilatlrNllekaeks......lievmvqvkllklleiLeerkfsDeditedleylkeeL 312
                  k+ W++y r++++s ++++lik+ ++ ++e     l  + ++p+y++ l +++s++ +++  l+y+L+ ++d l++e+      +rv+lf s++   e +      + ++f+  l++ +d + +++++ ila++l++++++++k   e+L+ ++ +l++q+s+s +      + av +l  llr  + R++f ++ gv  + ++lr    s + s+s+++ Q+ Y++++clW Ls e     +i++++  + +i +lvd + ++ +EKv+Rv+latlrNl++++ +       +++ m++ +l+k l++L er ++D+d++ed+e l++ L
  MMETSP0890-20130614|17767_1  28 KVDWSSYGRAGVLSGSEVDLIKSGEETPLEYT---LkdEVMAPRYAQALSKVVSSV-NDKAALRYVLTRMEDvLVAEECglslkERVELFFSTKTLAEVNtdpvskIRDVFMHcLSTVNDAYCSKTCAAILATILIAQSNSQSK---ELLEPFIIWLCDQMSASRSAKKseiKAAVPALTILLRCTAARSIFADHGGVGYVTKLLRrtstSVAVSTSQQSSQMVYELIFCLWTLSLEwsnsSRIVQDFHAHATIETLVDQVASAPREKVMRVSLATLRNLCSSSGTIlsnsqgVAAKMIKAGLVKNLRTLRERPWTDPDVKEDVEHLSKVL 351
                  799***********************999994...43466899*************.***************5555543777779*******99998888899999999****999999*************************...************777743332233499*******************************999985556679999**************986333367888888888******************************99988999999**********************************9876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1
    PF03224.9  25 liseedlklikaldkkkkeq 44 
                    +++d +lik+l ++ +e+
  MMETSP0890-20130614|17767_1 391 FAEANDFALIKKLVNIVSEE 410
                  44555666666666655555 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.18
    PF03224.9 109 pflkllnrqddfivllalrilakllse 135
                   ++kl +++d  +++ al+ ++kll++
  MMETSP0890-20130614|17767_1 452 SIMKLIDHPDPDVQRHALQCVSKLLVT 478
                  578899999999999999999999986 PP

>> PF11698.3  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   2.8e+03      77     112 ..     260     299 ..     252     304 .. 0.56
   2 !  129.1   0.0   2.9e-41   6.7e-38       2     119 .]     357     481 ..     356     481 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.2
    PF11698.3  77 egknileklkvkervmellsh....edeevrkeALlavqk 112
                  ++ +i++++++ +++ +l+ +    + e+v + +L ++ +
  MMETSP0890-20130614|17767_1 260 NSSRIVQDFHAHATIETLVDQvasaPREKVMRVSLATLRN 299
                  5556666666666555554431111556666666666655 PP

  == domain 2    score: 129.1 bits;  conditional E-value: 2.9e-41
    PF11698.3   2 kltsfdeYvaElksgkLew.spvHksekFWkenakkfeedefkllkkLiell.......eksedkttlavacnDigefvrlypegknileklkvkervmellshedeevrkeALlavqkllvqnwe 119
                  +l++f++Y+aE++sg+L+w s  H+ e FWk+nak  e ++f+l+kkL++++       +++e ++++a+ac+D+g fvr+yp+gk+++++l++k+ +m+l+ h+d++v+++AL++v+kllv nw+
  MMETSP0890-20130614|17767_1 357 ELSTFERYLAEVDSGELDWgSLCHS-EAFWKDNAKFAEANDFALIKKLVNIVseenqgeNDAEANKNIAIACSDLGDFVRFYPNGKAVIKHLGAKDSIMKLIDHPDPDVQRHALQCVSKLLVTNWQ 481
                  79*****************666666.********999***************87776654555999***********************************************************7 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.93   2.1e+03       9      24 ..     192     206 ..     185     213 .. 0.78
   2 ?   -2.9   0.0       2.8   6.3e+03       9      27 ..     213     231 ..     206     234 .. 0.72
   3 !    5.3   0.0    0.0071        16      14      41 .]     274     302 ..     271     302 .. 0.85
   4 !   10.6   0.0   0.00015      0.34      10      39 ..     446     475 ..     438     477 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.93
                  HHCHHHHHHHHHHC-S CS
   PF00514.18   9 ieaGavppLvqLLksg 24 
                  i+a avp+L  LL+++
  MMETSP0890-20130614|17767_1 192 IKA-AVPALTILLRCT 206
                  555.89**99999865 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.8
                  HHCHHHHHHHHHHC-SSHH CS
   PF00514.18   9 ieaGavppLvqLLksgdee 27 
                   ++G+v    +LL+ ++++
  MMETSP0890-20130614|17767_1 213 ADHGGVGYVTKLLRRTSTS 231
                  4899999999999844444 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0071
                  HHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  14 vppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  ++ Lv+     + e+v ++++++L+NL++
  MMETSP0890-20130614|17767_1 274 IETLVDQVAsAPREKVMRVSLATLRNLCS 302
                  66778888888999999***********6 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00015
                  HCHHHHHHHHHHC-SSHHHHHHHHHHHHHH CS
   PF00514.18  10 eaGavppLvqLLksgdeevqeeAawALsNL 39 
                  + Ga +  ++L++++d++vq+ A+ ++s L
  MMETSP0890-20130614|17767_1 446 HLGAKDSIMKLIDHPDPDVQRHALQCVSKL 475
                  666666789***************998865 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.7   6.1e+03      11      25 ..     125     139 ..     124     141 .. 0.75
   2 ?   11.6   0.0   9.1e-05      0.21       5      27 ..     453     475 ..     451     477 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.7
                  SSSHHHHHHHHHHHH CS
   PF02985.17  11 DpspeVReaAaeaLg 25 
                  Dp  ++R+    +L+
  MMETSP0890-20130614|17767_1 125 DPVSKIRDVFMHCLS 139
                  899999987777775 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 9.1e-05
                  HHHHHTSSSHHHHHHHHHHHHHH CS
   PF02985.17   5 llkllnDpspeVReaAaeaLgal 27 
                  ++kl+ +p+p+V + A+++++ l
  MMETSP0890-20130614|17767_1 453 IMKLIDHPDPDVQRHALQCVSKL 475
                  899****************9987 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.45     1e+03      52      86 ..      70     105 ..      55     107 .. 0.76
   2 ?   -2.0   0.0       1.8   4.1e+03      50      50 ..     182     182 ..     119     209 .. 0.60
   3 ?   -3.2   0.0         4   9.2e+03      65      82 ..     275     292 ..     267     307 .. 0.50
   4 ?   10.5   0.0   0.00022      0.51      26      58 ..     443     475 ..     400     479 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.45
    PF13646.1  52 aeaLgkl.gdpealpaLlklldddedavvreaaaea 86 
                  a+aL+k+ ++ +  +aL++ l++ ed  v e++  +
  MMETSP0890-20130614|17767_1  70 AQALSKVvSSVNDKAALRYVLTRMEDVLVAEECGLS 105
                  788998547888889999999988888887776555 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.8
    PF13646.1  50 a 50 
                  +
  MMETSP0890-20130614|17767_1 182 S 182
                  1 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4
    PF13646.1  65 paLlklldddedavvrea 82 
                  ++L++  ++ + ++v + 
  MMETSP0890-20130614|17767_1 275 ETLVDQVASAPREKVMRV 292
                  444444444333332222 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00022
    PF13646.1  26 qlgseealpaLlelLkdsdpevRraAaeaLgkl 58 
                   +++  a + + +l++++dp+v+r A+++ +kl
  MMETSP0890-20130614|17767_1 443 VIKHLGAKDSIMKLIDHPDPDVQRHALQCVSKL 475
                  355668899******************998875 PP

>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00046       1.1     106     186 ..      48     132 ..      13     197 .. 0.81
   2 ?    1.9   0.0     0.049   1.1e+02     149     243 ..     259     355 ..     218     371 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00046
    PF04286.7 106 ikellkknlektleevipeplagkllellleeerhkkllddlldriknllkdeevkakikelidefleeesgklv....lesivs 186
                  ik+  ++ le+tl++   +p  +++l+ ++++   k++l ++l+r++++l  ee    +ke ++ f+++++   v      +i +
  MMETSP0890-20130614|17767_1  48 IKSGEETPLEYTLKDEVMAPRYAQALSKVVSSVNDKAALRYVLTRMEDVLVAEECGLSLKERVELFFSTKTLAEVntdpVSKIRD 132
                  55555556678899999999999999******************************************99554444333333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.049
    PF04286.7 149 driknllkdeevkakikelidefleeesgklv...lesivsmflrgldsilekvqsdpdhplrqeetkeveeliadllndpelaaeveklkkkklsdl 243
                   + +++++d  ++a+i+ l+d+ ++    k++   l  + +   ++  +il + q   ++ ++  + k++++l ++  +dp++++ ve l k + ++ 
  MMETSP0890-20130614|17767_1 259 SNSSRIVQDFHAHATIETLVDQVASAPREKVMrvsLATLRNLCSSS-GTILSNSQGVAAKMIKAGLVKNLRTLRERPWTDPDVKEDVEHLSKVLSANY 355
                  5567889999999999999999988887776677655555555555.788888888888888888888888888888888888888888877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.38s 00:00:01.20 Elapsed: 00:00:00.73
# Mc/sec: 1592.10
//
Query:       MMETSP0890-20130614|17789_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-37  127.3   0.1    4.6e-37  126.9   0.1    1.2  1  PF01951.11 Archease protein family (MTH1598/TM1083)


Domain annotation for each model (and alignments):
>> PF01951.11  Archease protein family (MTH1598/TM1083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.1   3.4e-41   4.6e-37       1     134 [.      66     220 .]      66     220 .] 0.99

  Alignments for each domain:
  == domain 1    score: 126.9 bits;  conditional E-value: 3.4e-41
                  -B----SSEE-EEE----SHHHHHHHHHHHHHHHS--TT---S--B---EE-SSSHHHHHHHHHHHHHHHHHT--S------E.EE-.....................---EEE--B------.----------B--S---EEEE----EEEEEE CS
   PF01951.11   1 yeyldhtADvileaqGksleealesaaialfnymtdlskvepkkekeievegkdleklLfdfLdellylisaerflfkkveiediks.....................eeveieaillgekfdkekhkqgteiKAiTyhelsikeeedkwkarvv 134
                  ye+ldhtADv+++a+G++l+ a++ +   +f+y+t+ s+++  +e++++v+++dl  l f+fLdell+ +sa+++++ +v i++ ++                     + ++i+++  ge+fd +kh+qgte+KAiTy+++++++++d+  ++v+
  MMETSP0890-20130614|17789_1  66 YEHLDHTADVQFHAWGSDLQAAFSALGNCFFDYVTQRSTIQAIHEDSFTVDATDLHALVFRFLDELLFRFSADGLVCANVTITQLERgetnttkeetnnneiqasndrKPWKITVHTIGENFDLSKHPQGTEVKAITYSNMQVHRNDDRTDIFVI 220
                  9*************************************************************************************9**************************************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 924.91
//
Query:       MMETSP0890-20130614|17793_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-09   35.8   0.0    7.1e-09   35.0   0.0    1.3  1  PF00013.24 KH domain
    6.3e-06   25.3   0.3    8.7e-06   24.9   0.2    1.2  1  PF06003.7  Survival motor neuron protein (SMN)
    2.9e-05   23.5   0.1      8e-05   22.1   0.1    1.9  1  PF13014.1  KH domain
      0.001   18.5   0.3     0.0018   17.7   0.2    1.5  1  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      0.004   16.5   0.0     0.0067   15.8   0.0    1.3  1  PF07650.12 KH domain
  ------ inclusion threshold ------
      0.014   14.9   0.0       0.03   13.8   0.0    1.6  1  PF13083.1  KH domain
      0.022   15.0   0.5      0.065   13.5   0.4    1.9  1  PF13894.1  C2H2-type zinc finger
      0.029   13.3   0.6       0.04   12.9   0.4    1.1  1  PF02331.10 Apoptosis preventing protein
      0.035   13.6   0.2      0.059   12.9   0.1    1.4  1  PF06467.9  MYM-type Zinc finger with FCS sequence motif
      0.037   14.0   0.5      0.037   14.0   0.4    2.8  3  PF12171.3  Zinc-finger double-stranded RNA-binding
       0.14   12.5   0.8       0.34   11.3   0.6    1.7  1  PF00096.21 Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.7e-12   7.1e-09       6      57 ..      25      79 ..      24      80 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 5.7e-12
                 EECCCCHHH---TTHHHHHHHHHHT-EEEE..--SE...EEEEEESHHHHHHHHHH CS
   PF00013.24  6 vpnskigriIGkgGsnIkeIeeetgakIdv..pkdr..dtvtisGdpesvekAkkl 57
                 ++n+ +g +IG gG+ I++I+ e+ga+++   ++ +  +t+ isG+ +sv+kA  l
  MMETSP0890-20130614|17793_1 25 CDNESMGVLIGHGGASINAIRSESGATVRQytND-DtnTTFIISGELNSVNKAVHL 79
                 68999*************************6433.2477**************876 PP

>> PF06003.7  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2     7e-09   8.7e-06      72     230 ..      38     202 ..      30     210 .. 0.57

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 7e-09
    PF06003.7  72 gdscnavwsedgnlysatiasidakrgtcvvvytgygneeeqnladllteasdvdedalkeanvnetesstdesdrssrsheskd.ksnlekakssq.knlrfppvppptppgl...grrgekls.tlppflsgwppplpagppli.pp..pppms.pdageddealgs 230
                  g s na+ se g    at+  + ++      + +g  n+ ++++  l +++s+ +  + ++ + ++ ++  +e ++ s+ ++s++ ++    ak +q k  r  +    +          g k + ++pp  +  p plp+ pp i  p  ppp+s pd ++dd +lg 
  MMETSP0890-20130614|17793_1  38 GASINAIRSESG----ATVRQYTNDDTNTTFIISGELNSVNKAVHLLDAQKSKSHRLKYNKRDRDDAHHQQEEQHQESKRRRSNNdRTVNAVAKIAQgKTIRCTVCSKLFKTAHdmlNHFGAKHQyNAPPLQNPQPVPLPPPPPRIlHPilPPPLSyPDHSDDDSSLGR 202
                  567777778777....566655555555555556667777776665555555544444444445555555555554444444333222222333332134444444333222112226667777768899999999999999997632233566655**********95 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   6.4e-08     8e-05       3      25 ..      31      53 ..      29      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 6.4e-08
    PF13014.1  3 gliIGkgGetIkeIreetGakIr 25
                 g +IG gG++I+ Ir+e+Ga +r
  MMETSP0890-20130614|17793_1 31 GVLIGHGGASINAIRSESGATVR 53
                 889*****************987 PP

>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   1.5e-06    0.0018      14      26 ..       4      16 ..       1      17 [. 0.87

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.5e-06
                 --------SS--- CS
   PF00642.19 14 tCpyGdrCkFaHg 26
                  C +G++C+FaH+
  MMETSP0890-20130614|17793_1  4 GCTRGANCRFAHV 16
                 5***********7 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.4e-06    0.0067      35      60 ..      29      54 ..      25      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.4e-06
                 CCCCC------HHHHHHHHHHHHCHH CS
   PF07650.12 35 qpgivIGkgGsnikklgkelrkriek 60
                  +g++IG+gG+ i+++++e +  +++
  MMETSP0890-20130614|17793_1 29 SMGVLIGHGGASINAIRSESGATVRQ 54
                 69*****************9998865 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.4e-05      0.03      35      55 ..      25      45 ..      16      59 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-05
    PF13083.1 35 vdgedlGrlIGkrGktldALq 55
                 +d e +G+lIG  G  ++A++
  MMETSP0890-20130614|17793_1 25 CDNESMGVLIGHGGASINAIR 45
                 7999****************9 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   5.2e-05     0.065       2      24 .]     135     157 ..     134     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.2e-05
    PF13894.1   2 aCplCgktFttreeLrrHlakhH 24 
                  +C++C+k F+t++++ +H+ + H
  MMETSP0890-20130614|17793_1 135 RCTVCSKLFKTAHDMLNHFGAKH 157
                  6*****************97766 PP

>> PF02331.10  Apoptosis preventing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   3.2e-05      0.04      38     101 ..      54     118 ..      46     144 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.2e-05
   PF02331.10  38 tqlnknvlmafniSGplksvtrvnnelrdmiksklde.vfdklerdkysak.stdidgfekyfkse 101
                  +++n    + f+iSG+l sv++   +l+d  ksk ++  ++k +rd  +++  ++ +  ++   ++
  MMETSP0890-20130614|17793_1  54 QYTNDDTNTTFIISGELNSVNK-AVHLLDAQKSKSHRlKYNKRDRDDAHHQqEEQHQESKRRRSNN 118
                  6777788899**********96.57899******99635889999987777344444444444444 PP

>> PF06467.9  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.8e-05     0.059       4      24 ..     131     152 ..     129     159 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.8e-05
    PF06467.9   4 lvkkrCwfCkkyiktkptv.ya 24 
                  +++ rC+ C+k++kt +++ ++
  MMETSP0890-20130614|17793_1 131 GKTIRCTVCSKLFKTAHDMlNH 152
                  6899*************95544 PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.9       2.8   3.5e+03      22      27 .]      84      89 ..      83      89 .. 0.87
   2 ?   -2.3   1.3       3.9   4.8e+03      16      25 ..     104     113 ..     100     113 .. 0.71
   3 ?   14.0   0.4     3e-05     0.037       4      21 ..     136     153 ..     134     153 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.8
                 T-HHHH CS
    PF12171.3 22 ksKkHK 27
                 ksK H+
  MMETSP0890-20130614|17793_1 84 KSKSHR 89
                 9****7 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.9
                  HHHHHTT-HH CS
    PF12171.3  16 qlknHlksKk 25 
                  q ++H  sK+
  MMETSP0890-20130614|17793_1 104 QEEQHQESKR 113
                  4489999996 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 3e-05
                  -TTT--B-SSHHHHHHHT CS
    PF12171.3   4 CvaCdkyFksenqlknHl 21 
                  C +C+k Fk+++++ nH+
  MMETSP0890-20130614|17793_1 136 CTVCSKLFKTAHDMLNHF 153
                  *****************6 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00027      0.34       2      19 ..     135     152 ..     134     157 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00027
                  E------EESSHHHHHHH CS
   PF00096.21   2 qCpdCgksFsrksnLlrH 19 
                  +C  C+k F++ +++l+H
  MMETSP0890-20130614|17793_1 135 RCTVCSKLFKTAHDMLNH 152
                  7***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1393  (0.101887); expected 273.4 (0.02)
Passed bias filter:                      746  (0.0545641); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.76
# Mc/sec: 759.90
//
Query:       MMETSP0890-20130614|17856_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1000  (0.0731422); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.83
# Mc/sec: 1149.10
//
Query:       MMETSP0890-20130614|17870_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.57
# Mc/sec: 375.98
//
Query:       MMETSP0890-20130614|17879_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 252.47
//
Query:       MMETSP0890-20130614|17867_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-28  100.3   1.1    2.1e-28   99.8   0.8    1.2  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.96    9.2   7.6        3.2    7.5   5.3    2.0  1  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.8     3e-32   2.1e-28       1     251 []     265     580 ..     265     580 .. 0.73

  Alignments for each domain:
  == domain 1    score: 99.8 bits;  conditional E-value: 3e-32
                  EEEEECE.........................CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHCHHCTTT-EEEE--------SEEE.ECTEEEEEEESC...GCCEEEEEECTTS...........S-ECGGCEECCTCEEEEEEEEEE.......CTEEEEEEECHHHC.....TSSTTSHHHHHHHHHHHHHHCCHHHH.SEEEE---S--BSSGH......................TTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB--S--EEBHHHCCCCEEEEECTHHCHS..............SSS CS
   PF03372.18   1 ltwNvlg..................wnarsdrakkldqladllqsedpDvllLQEvdedplsellatglasglglagdgkvggggggda.lgggglallsky...pldksirrtfqld...........gkagiavprlssknkgdvpvrfr.......ggktlalvntHltp.....gnrlrqrderallaeidkladdsrgs.pvilaGDfNsrpdspd......................kgfrenaadflpgdgfddglrallphlllptspgttdtyekageparlDyilvssgwpalvvsgalllpdrgg..............SDH 251
                  +++N+l+                  w++r++r      ++d+l ++dpD+++LQE++ d+++++l++gl + ++  g +++ ++   +a    +g+a+++k+    l+++++ +f++             + ++a   +  k++++                ++++ ntHl +     + +l+q    all+++d++  ++r++ p++laGD+Ns p s +                      +++r++    +++ +++++l++ +++++   ++ + +t+  ++ +++lDyi++    +al+ +++ + +d++               SDH
  MMETSP0890-20130614|17867_1 265 ASYNILAeiyatfqqypycprfaldWRYRFRR------ILDELNHVDPDIICLQEAQRDHYEQDLEPGLDALGY-EGIFAQKSREAMGAaGKVDGCAVFWKRhkfRLAEHRTLKFNDLarqearilgmnERDEHAYLLRLVKDNVAQL---AvleqygpDRARICVANTHLYShkdfpDTKLWQ--TLALLKDLDRFVSRPRERlPLLLAGDLNSLPSSLVydllatggidpdhedmqailhaTHRRASI--LPDPRDISHHLNLASAYHV-ALGTEPLYTNFTHNFRGTLDYIFY--DATALRCVAVAQIHDEHEltlagdglpnaqfpSDH 580
                  69******************************......***********************************9.777777666566669************5551444444444443444444444443333333333333333222...245579997789*******77777766999999..88**************99***************99******99998888888776665555555..3344445555555555553.44555555555566667*******..55555555555555554457777888888899999 PP

>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.3   0.00047       3.2      10      38 ..      75     108 ..      50     109 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00047
                  ---EE----...S--.....EESSHHHHHHHHHHHTT CS
   PF01753.13  10 lkllrCsgC...ksv.....kYCskeCQradwkeHkk 38 
                  l   +C  C   ++v     ++Cs+ C  ++w++Hk+
  MMETSP0890-20130614|17867_1  75 L---HCVACaksHKVpkelmTFCSSRCFVEAWPSHKS 108
                  3...4555554444455555***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:01.02
# Mc/sec: 1386.13
//
Query:       MMETSP0890-20130614|17877_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-09   36.7   0.1    2.7e-09   36.4   0.0    1.1  1  PF00069.20 Protein kinase domain
  ------ inclusion threshold ------
      0.054   13.3   0.2       0.09   12.6   0.1    1.4  1  PF03109.11 ABC1 family
       0.13   11.3   0.1       0.17   10.9   0.1    1.1  1  PF13645.1  L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   5.8e-13   2.7e-09       6      82 ..       2      79 ..       1      99 [. 0.82

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 5.8e-13
                 EEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH..H-TTB--EEEEEEE..STEEEEEEE--SC CS
   PF00069.20  6 klGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl..sHpnivkllevfee..kdelylvleyveg 82
                  +  Gs GkVy+a + +tg++vA+K+l  +++ +++ ++   E++il+k   ++++i++++++ ++   ++++++l ++  
  MMETSP0890-20130614|17877_1  2 VVAVGSAGKVYEACHLETGTQVAIKELPIQRNLRRQVRK---EAEILRKAssKSQFICTYVDYQKTskTTHMWICLTICGF 79
                 5778****************************9988766...99999988445999*********9888899999999854 PP

>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     2e-05      0.09      19      79 ..       3      64 ..       1      76 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2e-05
   PF03109.11 19 lAaASiaQVHrA.vlksgeeVavK...vqrpgvkkriksDlkllkllakllkkiskearldleel 79
                 +A++S + V++A  l++g +Va+K   + + ++++++++  ++l+   +  ++i     +d++++
  MMETSP0890-20130614|17877_1  3 VAVGSAGKVYEAcHLETGTQVAIKelpI-QRNLRRQVRKEAEILRKASSKSQFICTY--VDYQKT 64
                 899*******9746888*******4433.5579999999999999888888877666..455555 PP

>> PF13645.1  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.8e-05      0.17      12      54 ..      31      73 ..      21      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.8e-05
    PF13645.1 12 klkvlekalealkklkkkklkkkdvltiiDfskpStekRlfvi 54
                 + +  ++  ++++ l+k++ k++ ++t +D++k S++  ++++
  MMETSP0890-20130614|17877_1 31 QRNLRRQVRKEAEILRKASSKSQFICTYVDYQKTSKTTHMWIC 73
                 445445555666666666777899*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      438  (0.0320363); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.44s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 476.28
//
Query:       MMETSP0890-20130614|17881_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        78  (0.00570509); expected 273.4 (0.02)
Passed bias filter:                       65  (0.00475424); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.38s 00:00:00.66 Elapsed: 00:00:00.63
# Mc/sec: 171.17
//
Query:       MMETSP0890-20130614|17889_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   33.8   0.0    4.9e-08   32.5   0.0    1.7  1  PF12763.2  Cytoskeletal-regulatory complex EF hand
     0.0013   17.7   0.0      0.003   16.6   0.0    1.7  1  PF00036.27 EF hand
     0.0052   16.7   0.0      0.012   15.5   0.0    1.7  1  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
       0.06   13.1   0.1        0.2   11.5   0.0    1.9  2  PF13405.1  EF-hand domain
      0.081   12.4   0.1       0.19   11.2   0.0    1.6  2  PF08795.5  Putative papain-like cysteine peptidase (DUF1796)


Domain annotation for each model (and alignments):
>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.8e-11   4.9e-08      38      94 ..     222     277 ..     178     281 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.8e-11
    PF12763.2  38 skleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpe 94 
                  s+++e++l + w+lad+  dg l+f+ef++ ++l+ +   ++ + +P++lP  lvp 
  MMETSP0890-20130614|17889_1 222 SEMDEKQLRQAWHLADVTRDGALNFQEFVLFVHLV-EWHRNSLAPLPHHLPPELVPP 277
                  8999*****************************98.667778999*********995 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06     0.003       2      26 ..     229     253 ..     228     256 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkeal 26 
                  l++a+ ++D+ +dG ++f+Ef+ ++
  MMETSP0890-20130614|17889_1 229 LRQAWHLADVTRDGALNFQEFVLFV 253
                  89*******************9886 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.5e-06     0.012      33      63 ..     214     250 ..     181     253 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.5e-06
    PF13499.1  33 ls......deevrevldyifkelDkngdGvlsfeEfl 63 
                  +s       e+ +++l++ ++ +D  +dG l+f+Ef+
  MMETSP0890-20130614|17889_1 214 ISflrtalSEMDEKQLRQAWHLADVTRDGALNFQEFV 250
                  3367667666666688888*****************8 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8   7.6e+03       4      14 ..     184     194 ..     183     195 .. 0.82
   2 ?   11.5   0.0   7.3e-05       0.2       2      25 ..     229     252 ..     228     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.8
                  ---GCC----- CS
    PF13405.1   4 eaFklfDkdgd 14 
                  +aF+++  d+d
  MMETSP0890-20130614|17889_1 184 DAFRALSSDQD 194
                  68999988887 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.3e-05
                  HH---GCC-------B---HHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrda 25 
                  lr+a++l D ++dG ++++E++ +
  MMETSP0890-20130614|17889_1 229 LRQAWHLADVTRDGALNFQEFVLF 252
                  89*******************865 PP

>> PF08795.5  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.3     9e+03     136     148 ..      88     100 ..      69     107 .. 0.46
   2 ?   11.2   0.0     7e-05      0.19     106     159 ..     199     253 ..     197     258 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 3.3
    PF08795.5 136 leelpellqalse 148
                     l++l   l+e
  MMETSP0890-20130614|17889_1  88 ASLLRQLVRRLEE 100
                  2222333333333 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 7e-05
    PF08795.5 106 rRirallallsaskpvlfirtviaengaeeleelpellqalsertkg.lpfllvl 159
                  +R+rall+l ++++++ f+rt ++e  +++l+++  l +++++   + ++f+l++
  MMETSP0890-20130614|17889_1 199 TRMRALLQLNDHGNEISFLRTALSEMDEKQLRQAWHLADVTRDGALNfQEFVLFV 253
                  69*************************************9988877767776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1221.48
//
Query:       MMETSP0890-20130614|17895_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-53  180.5   0.3    3.3e-53  180.2   0.2    1.0  1  PF03883.9 Protein of unknown function (DUF328)


Domain annotation for each model (and alignments):
>> PF03883.9  Protein of unknown function (DUF328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.2   2.4e-57   3.3e-53       1     237 []       1     248 [.       1     248 [. 0.91

  Alignments for each domain:
  == domain 1    score: 180.2 bits;  conditional E-value: 2.4e-57
    PF03883.9   1 MlillsPAktldee.sp.leteeltqpelldeaeellkalkelsaeelaelmkisdklaelnaerfqels.enakpAilafsGvvYkgLdaeslseealeyaqehlrIlSgLYGvlrplDliqpYRlemgtklknakgknLyafWgekiteaLneele........devlvnLaSeeYfkavkpkklkarvitvkfkeek.ngklkvisfyaKkaRGlmaryllenrieepeelkefdsegyafeeels 237
                  M +llsPAk++d++ s+ +++  +  p  + ++ el++ l++ s+++l++ +++s ++a++n++r+++++ ++ ++Ai a++G +Y +L+ ++ls+e+++ a  +++++Sg++G +r+l  i+pYRlem  k   + +++L++fW+e++te++ +  +        +++l+n aSeeY++av+  +l+   it++  +    gk +  +++ K  RGl++ry+++n+i+++++l++f+ eg++f+++ls
  MMETSP0890-20130614|17895_1   1 MQVLLSPAKSMDFSiSHeADAAGMYDPVVSTKTDELVEVLSSQSVSQLEKTLGVSTTIAQENFDRLKSWNtNEMRQAIVAYDGFAYAKLRGRTLSTEEMKIAHAKIIMISGMWGPVRALTGIKPYRLEMACKKLPKPYTKLADFWKEDVTEEIINGFSpklkkkekQNILINVASEEYAAAVDFDALRSANITIVKIDFYqAGK-RAPTVHLKYGRGLITRYIIQNNIDNLTALQSFNLEGFSFSAQLS 248
                  99************85558999999********************************************844456******************************************************97544489**************999888888889999*****************988866666655444441677.899999**********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 1129.13
//
Query:       MMETSP0890-20130614|17901_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 767.48
//
Query:       MMETSP0890-20130614|17987_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0099   14.9   0.0      0.012   14.6   0.0    1.1  1  PF00001.16 7 transmembrane receptor (rhodopsin family)
  ------ inclusion threshold ------
      0.042   13.6   0.0      0.068   12.9   0.0    1.4  1  PF13509.1  S1 domain
       0.11   11.2   0.2       0.29    9.8   0.1    1.7  2  PF02540.12 NAD synthase


Domain annotation for each model (and alignments):
>> PF00001.16  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-06     0.012     187     228 ..      69     141 ..      45     151 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.6e-06
                  X...............................XXXXXXXXX--TTTTT---HHHHHTTTSSSHHHHHTTTT-- CS
   PF00001.16 187 s...............................skrkkslkkekkaaktlliivlvfilcwlPffilvllntlc 228
                  s                               +    +  +  k++k+++++v+vf++ w   ++++++++ +
  MMETSP0890-20130614|17987_1  69 SrivssqqsriisskpppasikyqevtdkepiNIHYTRIDEPAKLVKMIIVLVVVFFISWKVHQFIMYVSVPE 141
                  2455555556666666666666666666666666677778889*****************9999999988755 PP

>> PF13509.1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.068      19      47 ..      20      48 ..       6      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
    PF13509.1 19 LdggengevlLpkkevpeeleiGDevevF 47
                 L+gg +++vlLp  ++  ++ iGD v+++
  MMETSP0890-20130614|17987_1 20 LTGGLSETVLLPLDALDATITIGDAVDMY 48
                 589999********************975 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.13   5.9e+02      79     100 ..      39      62 ..      23      76 .. 0.46
   2 ?    9.8   0.1   6.4e-05      0.29     171     205 ..      79     114 ..      46     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.13
                  ---HHHHHHHHH..HHHHH-.TTT CS
   PF02540.12  79 idikeivaafse..eleeekekla 100
                  i i ++v++++    ++++ ++ +
  MMETSP0890-20130614|17987_1  39 ITIGDAVDMYETyvDVKDAMKEEE 62 
                  444444444444222222222222 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 6.4e-05
                  HHHCS--B--S.STT-BHHHH----HHHHHHHHHHS CS
   PF02540.12 171 rvikkaPsAdL.kegqtDeeelgisYdelDeiLkli 205
                   +  k+P A++  ++ tD+e ++i Y  +De  kl+
  MMETSP0890-20130614|17987_1  79 IISSKPPPASIkYQEVTDKEPINIHYTRIDEPAKLV 114
                  5678*******66788**************976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       960  (0.0702165); expected 273.4 (0.02)
Passed bias filter:                      673  (0.0492247); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 523.78
//
Query:       MMETSP0890-20130614|18044_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.6e-107  357.0   3.5   1.1e-106  356.8   2.5    1.0  1  PF00815.15 Histidinol dehydrogenase


Domain annotation for each model (and alignments):
>> PF00815.15  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.8   2.5  7.8e-111  1.1e-106      23     412 ..       8     398 ..       1     399 [. 0.93

  Alignments for each domain:
  == domain 1    score: 356.8 bits;  conditional E-value: 7.8e-111
                  HHHHHH---HHHHHHHHHSSSS-.-SSSB--HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTT-..---EEEES----EEEEEEEE-SEE-EE--------THHHHHHHHHHHH----EEEEEE-SS-....-HHHHHHHHH----EEEE----HHHHHHH----SS---SEE-----HHHHHHHHHHHH..-E.ES------EEEEEE-----HHHHHHHHHHHHT-----EEEEEES-...HHHHHHHHHHHHHHHTT-TTHHHHHHHHTT-EEEE-SSHHHHHHHHHH----EEEEESTTHHHHGGG------EEE-----TT-----------------TTT------GGGEEEEEEEE------TT.THHHHHHHHHHTT-HHHHHHHHHHH CS
   PF00815.15  23 ieavkeeGdkalleytekfdgve.leklrvsaeeleealeeldeelkealevaieniekfHaaqle.skelkvetepgvvvgqvvrpiekvGlYvPgGkavlpStvlmlavPAkvAGvkkivlasPpkkdGkvepevlvaaklvgvdeiykvGGaqAvaalAyGtetvekvdkivGPgniyvtaAKrlvsg..evdidmpAGPsEvlviaDetadpefvaadllsqaEHdedsavvlvtds...eelaeeveeeveeqleklerkeivrkaleasaillvkdleealelsneyapEHLeiqtkdaeelldkiknAgsiflGayspesvgdYasGtNhvLPtyglarsysglsvadFlkkitvqelteeglkn.vaetvvtlaeaEgLeaHaeavkaRl 412
                  +ea+k++G +a+l+ +ekf  v+  e++ ++  +l+ea+++ld++ +e l++ +++i kf +aq+   +e ++e+ pg  +g++v p+e  G+Y PgG+ +lpS+vlm++  Ak AG+k+ivlasP     k+++ +l+aa ++g+++++++GGa A+ a+A G   v+++d i GPgn +vtaAK + s    v+idm AGPsEvlviaDe+adp ++aadll+qaEHd+ +  +lvt      + + +v++e+++qle+l+ k +++ a+e ++ + +++++ea++++++ apEHLei tk++++++dk ++ g +f+G  + e +gdY +G+Nh+LPt+g+ar  +glsv  Fl+  t ++++++  ++   ++ + la+ EgLeaHa+a ++Rl
  MMETSP0890-20130614|18044_1   8 MEAIKSQGTAAVLKSAEKFGEVKnGESMMIQVTSLKEAYDSLDKNDRECLDRVASRIIKFATAQRLaIQEFEIEI-PGGHAGHTVSPVEVAGCYAPGGRYPLPSSVLMTVCTAKAAGCKSIVLASP-----KPSQVTLAAAYVAGATHVLAIGGAHAICAMALGA-GVPRCDIICGPGNKWVTAAKAVASIsaCVGIDMLAGPSEVLVIADESADPGLIAADLLAQAEHDVVARPILVTLGqnaIDIIANVNKELQSQLETLPTKAVASPAVECGFAVPCSSIDEAVRVADAVAPEHLEIITKNPQQIADKCNHYGGLFIGMGAAEVLGDYGIGPNHTLPTSGTARYTGGLSVLHFLRVRTWMRIDNSQQSQpAVQDAIILARHEGLEAHARAAERRL 398
                  799******************99468899***********************************98566666666.7*************************************************.....5779*****************************7.69******************976555599********************************************9933334567999**************************************************************************************************************999876554415567788***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.89
# Mc/sec: 1114.71
//
Query:       MMETSP0890-20130614|18068_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.87
# Mc/sec: 253.41
//
Query:       MMETSP0890-20130614|18066_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-31  107.9   0.8    3.6e-31  107.6   0.6    1.2  1  PF05419.7 GUN4-like


Domain annotation for each model (and alignments):
>> PF05419.7  GUN4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.6   2.7e-35   3.6e-31       4     132 ..      77     215 ..      74     216 .. 0.89

  Alignments for each domain:
  == domain 1    score: 107.6 bits;  conditional E-value: 2.7e-35
                  HHHTT-HHHHHHHHHHHHHHH---H..CHTS--HHHHCTS-HHHHHHHHHHHHHT-------HHHHHHHHH----.......HHHHHHH----.........-----SSTTTS--STTS-----S......--HHHHHHHTSCHHH CS
    PF05419.7   4 lLaakkwkeAdeetarlllklagre..kegwltvedieklpcedLktiDqLWvkySkgkFGfsvQkkiyeslggkseykekvlekfgdrvgWr.........kegkwlsyseltfslsapeGhlP......gvallaallsllave 132
                  +L+a++++eAd+ t++ll+++ag +   +g+++ ++ ++lp++dL ti+qLW  yS+ kFG++vQk+i+++ +g        +++f++++gW          ++++w+  se+++sl+ap+GhlP      g++ll+all++  +e
  MMETSP0890-20130614|18066_1  77 ALQAQNFEEADQITRDLLIQIAGTAsqARGYVYWTEAQRLPTADLITIEQLWNFYSDSKFGYTVQKDIWRRNKGV-------FDEFCRKLGWTttdldtgleRKRRWFGKSEFDYSLNAPKGHLPltsalrGTQLLKALLQHATWE 215
                  79********************9976689*****************************************99998.......99********85666655555588*******************988888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 846.46
//
Query:       MMETSP0890-20130614|18083_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-22   78.2   0.3    4.8e-22   77.7   0.2    1.3  1  PF04683.8 Proteasome complex subunit Rpn13 ubiquitin receptor
      1e-16   60.8   0.5      1e-16   60.8   0.3    2.3  2  PF13658.1 Ubiquitin C-terminal hydrolase 37 receptor binding site


Domain annotation for each model (and alignments):
>> PF04683.8  Proteasome complex subunit Rpn13 ubiquitin receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.2   7.1e-26   4.8e-22       1      85 []      12     103 ..      12     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 7.1e-26
    PF04683.8   1 Gkmeld....g.kkvtpdprkGliylvksedgllhfqWrdretr.neveddlilfpgdatfkkvksc.ktgrvyvLkfksssek.yfFWlQek 85 
                  Gk+e +    g  +++p +rkG+++lv+ +d+llhfqWrdr+t    +  d ++fpgda+f+k++++ + +r+yvL+f+ ++++ +fFW+Q+k
  MMETSP0890-20130614|18083_1  12 GKCESEprpnGkIWIKPLNRKGEVQLVR-QDELLHFQWRDRTTLaVDPSCDHMIFPGDAKFEKMETGrEGDRCYVLQFQAQENRrFFFWMQQK 103
                  777777444325689*************.569***********9889999****************98999********999998******86 PP

>> PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4     0.031   2.1e+02      53      79 ..     147     173 ..     107     191 .. 0.75
   2 !   60.8   0.3   1.5e-20     1e-16      12      98 .]     194     275 ..     181     275 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.031
    PF13658.1  53 qalasltqalrdgglpsilsalglkve 79 
                  q+ +s   +l  ++l+s++++lg++++
  MMETSP0890-20130614|18083_1 147 QNQSSAPAQLTLESLQSVMQNLGMPPA 173
                  445555566777788888888888775 PP

  == domain 2    score: 60.8 bits;  conditional E-value: 1.5e-20
    PF13658.1  12 lepllesadevqerLlsfLPeedlerapealrevlrsPqFkqalasltqalr.dgglpsilsalglkvenggvpaagggaveafleal 98 
                  ++ +l+++ +++erLl++LPe+  +r++++l+ v+rsPqF+qal++l  al   + ++sils++ l +     +a   ++v+afl+al
  MMETSP0890-20130614|18083_1 194 TSGILQEP-ATMERLLPHLPEG--QRTTAELEAVIRSPQFRQALDQLARALSsPENFGSILSSFRLAPNP---NAPTLDPVRAFLDAL 275
                  44588888.999**********..****************************7789**********9988...79999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 1242.11
//
Query:       MMETSP0890-20130614|18107_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-22   80.4   0.0    1.3e-22   80.1   0.0    1.1  1  PF00977.16 Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.053   12.5   0.0       0.09   11.7   0.0    1.4  1  PF00834.14 Ribulose-phosphate 3 epimerase family


Domain annotation for each model (and alignments):
>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.8e-26   1.3e-22       4     222 ..      19     248 ..      16     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 1.8e-26
                  EEEEE----BEEE.---G......CCEECESS-HHHHHHHHHH----EEEEEEHHHHHHHHHHHHHHHHHHHTT-SSEEEEE----SHHHHHHHHH----EEEESHHHHH-THH....HHHHHHH-.-TTTEEEEEEEEEE.....EEEE---TEEEGEEHHHHHHHHHH----EEEEEETTC--------HHHHHHHHHHHSSEEEEE----SHHHHHHHHC---..-EEEESHCC CS
   PF00977.16   4 palDlkdgkvVrlvkGdr......fknlryagdpvelakkyeeegadelhvvDLdaakegreanldlveeiaeevfiplqvGgGIrsledveelleagadkviigtaavknpel....ikelaekf.gsqkivvaiDakkg.....kvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdlellkklaeavkipviasGGvgsledlkelksegv..davlvgsal 222
                  p++Dlk g++ ++v G         +n ++ ++p  +ak ye++g+   hv++L         n ++ +e + ++   +qvGgG+   + + ++leaga+ vi ++  +++ ++    + +l++++ g+ ++v+ + ++k+      v+++ w++ t++ +           ++e+l++ +d +G + G+d +l++ l  +  +pv+++GG++s++d++ + + g    ++ vgsal
  MMETSP0890-20130614|18107_1  19 PCIDLKGGNITQIVGGSLdkegnaVENFVSREKPSYYAKLYERDGLFGGHVIML--GP----GNEEMAKEALAAFPGGFQVGGGVTAAN-ACQWLEAGASHVIATSFIFHDGTFdrerLAQLIQAVgGKHRLVLDLSCRKKkdgnyYVVTDRWQKFTTMRVDADTLIELGNHCAEFLVHGVDVEGKRLGVDGDLVSILGIHSPLPVTYAGGARSIQDFELVRNLGRgrVDLTVGSAL 248
                  9************99999444444455555666666******************..33....4555556666666666*******9999.999************99665433322226666666636789*********445689*********988877666655666679*************************************************655544899999998 PP

>> PF00834.14  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.09     170     199 ..      92     121 ..      78     123 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.3e-05
                  EEE----TTTCHHHHH----EEEE--TTTT CS
   PF00834.14 170 evDGGvkldnieqiaeagadvlVagsavfk 199
                  +v GGv+++n+ q  eaga +++a s +f+
  MMETSP0890-20130614|18107_1  92 QVGGGVTAANACQWLEAGASHVIATSFIFH 121
                  799*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.72
# Mc/sec: 928.59
//
Query:       MMETSP0890-20130614|18142_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-64  215.5   0.1    5.5e-64  215.3   0.1    1.0  1  PF02633.9 Creatinine amidohydrolase


Domain annotation for each model (and alignments):
>> PF02633.9  Creatinine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.1     4e-68   5.5e-64       3     235 ..      24     270 ..      22     272 .. 0.95

  Alignments for each domain:
  == domain 1    score: 215.3 bits;  conditional E-value: 4e-68
    PF02633.9   3 eltwpeveealkerdvvilPvGstEqHGphlplgtDtliaeavaervaerlga...vlvlPtlpyGvspehlgfpGtislsaetllavlkdileslarhGfrrlvivNgHggneallkeaarelraespdlavvvlswwrlaaeeg.laeeeeeeegiHAgeaEtSlmlalaPelVrmdr..........aakaaeepellsekgrallaweardlspdGvvgdpskasaekGerlleaavealvel 235
                   +  +++ ++  +++v++lP+G++E HGphlplgtD++   a++++++++l++   vl lP++++Gvs eh++f+Gt++lsaet+l+ + d++++++++G+ +lvi N+Hggn +l +++ar++r++ + l ++++++ +++a+   l+++ee++ giH+g++EtSlmlal+PelVrm++           ++++++ ++ +++ + ++ w a+dl+ +Gvvgd++ ++aekG++l +aa+ a+++ 
  MMETSP0890-20130614|18142_1  24 GMDNEDFSTKTLTEAVAVLPIGAIEAHGPHLPLGTDAMHNAALLDKALNQLPDrctVLALPPFQVGVSCEHSAFAGTLQLSAETALKAWFDVANCVRTAGISKLVIYNSHGGNHPLAEVLARRVRHDLNMLCLLAMNLGDVSACISsLFPQEEAKFGIHGGALETSLMLALKPELVRMQKaqnfsssashFQTDKSTIRIHQPGFANKIGWLAQDLNLNGVVGDATLSDAEKGQALADAAATAFADI 270
                  56778888887789*****************************************************************************************************************77778888888888888779****************************************999889999999999999************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.20s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 1011.07
//
Query:       MMETSP0890-20130614|18146_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 633.88
//
Query:       MMETSP0890-20130614|18141_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 733.43
//
Query:       MMETSP0890-20130614|18193_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-40  136.2   0.0    1.2e-39  135.8   0.0    1.0  1  PF01557.13 Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> PF01557.13  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.0   9.1e-44   1.2e-39       1     206 [.      35     236 ..      35     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 135.8 bits;  conditional E-value: 9.1e-44
   PF01557.13   1 kiiavglnyaehaeeagsagleppdsgvplepv.fflkppsslvgpgt..p.irrPagsrkldyEvELavvigkplgevltaeealdaiagytlanDvsaRdlqgeealpl.gwflaksfdtfapiGpw..ivtpdelgdpadlalrlrvngelvqrsstsdlifspaqliahlsrgltLepGdlvltGTpsgvgafetlrflqpgDtvevei 206
                  ++++vg+ny +ha e+++ ++++   g p ep  ff kp+   v + +  + i++P+ +++l +EvEL+v ig+ ++++ ++eea +++ ++ ++ D+++Rdlq e +++  +w  ak+fd +ap Gp   +     l++p    ++l+ n+ + q++s++ +ifs+a+ i+hls+  t+++Gdl++tGTp+gvg      +l  gD v ++i
  MMETSP0890-20130614|18193_1  35 RVYCVGRNYWDHALEMEKKQKAMGIDGDPREPPfFFQKPAYGAVVDTSiqNiIPYPSLTKELEFEVELVVAIGQSGHNI-SVEEAQQYVYALGVGCDLTRRDLQNEAKSKRrPWDAAKAFDFSAPCGPLrkV---STLPKP-GAIMTLKRNHHVCQKTSLDLMIFSIAESISHLSKQVTIHAGDLIFTGTPAGVG------PLVVGDSVLCSI 236
                  68*****************8888888888887769999987766633322446*********************99999.99**************************44447777*************533...456555.888************************************************98......799999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.78
# Mc/sec: 798.79
//
Query:       MMETSP0890-20130614|18204_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-27   93.7   0.0    1.3e-26   93.0   0.0    1.3  1  PF05903.9 PPPDE putative peptidase domain
    7.2e-16   57.6   0.0    1.7e-15   56.3   0.0    1.6  1  PF09409.5 PUB domain
  ------ inclusion threshold ------
       0.31   11.2   6.5       0.36   11.0   2.2    2.8  2  PF13658.1 Ubiquitin C-terminal hydrolase 37 receptor binding site


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   2.8e-30   1.3e-26       2     148 ..       3     146 ..       2     149 .. 0.92

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 2.8e-30
    PF05903.9   2 kvklivydlsliktglarrv....sllllGkklegiyhtgvevygkeyalggkekeesgitelkpkt..tsegakfresielgeTevteeevreileelsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPkwinrlariklstpfgkallp 148
                  +v++ +ydls   +g+a ++     +ll Gk+++ i htg+ v g e+++gg      gi++ kp+      ga ++ +  lg+T+ ++ + +++l++  +e++ + Y+L  +NCn+F+++++++Ltg++iP+wi  l+++ lstp g++l++
  MMETSP0890-20130614|18204_1   3 TVEVAIYDLS---QGMAMQMsqmsAQLLNGKRIDIIPHTGIRVFGFEWFYGG------GIQSIKPAAveATFGAAPKSIETLGTTTKSRVDLEAFLRSKTNEWTATGYDLWRHNCNNFSEMVAQFLTGQSIPSWILTLPDEILSTPLGQMLES 146
                  6999*****9...7777777666667788*********************99......********98778888888888*********************************************************************9976 PP

>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   3.8e-19   1.7e-15       7      70 ..     270     331 ..     266     346 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 3.8e-19
    PF09409.5   7 kkaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeeeeeflvlp 70 
                  + +l+ L  + + I+ +P++ekyR+++l+N tf++k+ s++ga+ +L+ +GF ee  ++ lvl+
  MMETSP0890-20130614|18204_1 270 LDCLKALQGICTKIIDHPDNEKYRKLKLDNATFQRKVGSHQGAIAILKKAGFYEE--NNCLVLT 331
                  6799***************************************************..9999998 PP

>> PF13658.1  Ubiquitin C-terminal hydrolase 37 receptor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.46   2.1e+03      41      52 ..     213     235 ..     175     239 .. 0.63
   2 ?   11.0   2.2   7.9e-05      0.36      19      65 ..     414     460 ..     410     477 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.46
    PF13658.1  41 a...........lrevlrsPqFk 52 
                  +           l +vl++Pq++
  MMETSP0890-20130614|18204_1 213 KanigndarlvfLGKVLNNPQVT 235
                  13455666677788999999985 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7.9e-05
    PF13658.1  19 adevqerLlsfLPeedlerapealrevlrsPqFkqalasltqalr..dg 65 
                  + + +++ +   P+   +  ++++++++++Pq +q l  l+ a+   +g
  MMETSP0890-20130614|18204_1 414 P-QRVQEIMRTNPQVA-QHLQSSMMRIMQNPQLAQDLMLLSAAQAgqSG 460
                  4.77799999****96.899999******************99984433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.99
# Mc/sec: 1348.25
//
Query:       MMETSP0890-20130614|18219_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.14   12.0   0.0    1.5  1  PF06667.7 Phage shock protein B


Domain annotation for each model (and alignments):
>> PF06667.7  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     1e-05      0.14       5      64 ..      14      73 ..      10      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1e-05
    PF06667.7  5 flavplivfvlfvapiWliLHYrskkkksqglseedekeLeeLlekaekleeRietlEri 64
                 +++ ++i  ++     +l  HY+ + +  q  s+e+e+ +eeLl++a+ l+e    +E+ 
  MMETSP0890-20130614|18219_1 14 IVVGIVISIITTNKAYYLSPHYSFRCRLIQRKSKENEDAVEELLKQAQALREEAAMMEAQ 73
                 44444444444455678999*******************************999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       991  (0.0724839); expected 273.4 (0.02)
Passed bias filter:                      800  (0.0585138); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.66
# Mc/sec: 733.43
//
Query:       MMETSP0890-20130614|18220_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-56  185.3   0.0    2.4e-14   52.4   0.0    4.0  4  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.058   13.2   0.1    2.0  2  PF05584.6 Sulfolobus plasmid regulatory protein
      0.015   14.9   0.0        3.5    7.3   0.0    2.3  2  PF09837.4 Uncharacterized protein conserved in bacteria (DUF2064)
      0.021   14.3   0.0         12    5.5   0.0    3.1  4  PF07892.6 Protein of unknown function (DUF1667)
      0.063   12.0   0.0      0.078   11.7   0.0    1.3  1  PF05785.7 Rho-activating domain of cytotoxic necrotizing factor


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0     3e-15   8.3e-12      11      49 .]       3      41 ..       2      41 .. 0.97
   2 !   51.3   0.0   1.9e-17   5.2e-14       1      41 [.      18      58 ..      18      64 .. 0.93
   3 !   52.4   0.0   8.8e-18   2.4e-14       1      49 []      43     103 ..      43     103 .. 0.98
   4 !   49.8   0.0   5.8e-17   1.6e-13       1      47 [.      80     126 .]      80     126 .] 0.97

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 3e-15
    PF13475.1 11 kngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                 +ng al+++s+ L++D++ivl A+ qn++al+ya eeL+
  MMETSP0890-20130614|18220_1  3 QNGLALQFASSALRKDRNIVLTAITQNCCALEYANEELQ 41
                 9************************************97 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 1.9e-17
    PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsal 41
                 Dr ivl a+++n++al+y++eeL+nD+eivl+Av + g a 
  MMETSP0890-20130614|18220_1 18 DRNIVLTAITQNCCALEYANEELQNDREIVLAAVTKGGFAA 58
                 9*********************************9988775 PP

  == domain 3    score: 52.4 bits;  conditional E-value: 8.8e-18
    PF13475.1   1 DrEivleavkkngs............alkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                  DrEivl+av+k g+            +l+y+s  LknD eivl+Av q+g+al++as e +
  MMETSP0890-20130614|18220_1  43 DREIVLAAVTKGGFaaslygtirsgdSLRYASQQLKNDYEIVLAAVTQSGYALKFASQEVK 103
                  9********************************************************9875 PP

  == domain 4    score: 49.8 bits;  conditional E-value: 5.8e-17
    PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyasee 47 
                  D Eivl+av++ g+alk++s e knD+ +vl+Av q+g+al+ya ee
  MMETSP0890-20130614|18220_1  80 DYEIVLAAVTQSGYALKFASQEVKNDRGLVLAAVTQSGCALEYANEE 126
                  67******************************************987 PP

>> PF05584.6  Sulfolobus plasmid regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.1e-05     0.058       9      40 ..      21      52 ..      15      54 .. 0.88
   2 ?   -0.4   0.0      0.38     1e+03       9      26 ..     108     125 ..     100     126 .] 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
    PF05584.6  9 lilirlsakcatLeeLeekTgaekeellVtLt 40
                  +l  ++++c++Le+ +e+ + ++e +l   t
  MMETSP0890-20130614|18220_1 21 IVLTAITQNCCALEYANEELQNDREIVLAAVT 52
                 578899999******************98776 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.38
    PF05584.6   9 lilirlsakcatLeeLee 26 
                  l+l+ +++  ++Le+ +e
  MMETSP0890-20130614|18220_1 108 LVLAAVTQSGCALEYANE 125
                  678889999999999765 PP

>> PF09837.4  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0038        10      80     103 ..      33      57 ..      10      60 .. 0.91
   2 ?    7.3   0.0    0.0013       3.5      78     104 ..      68      95 ..      65     115 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0038
    PF09837.4  80 laqafeaLer.adlVlgpaeDGGYy 103
                  l+ a e+L++  ++Vl + + GG+ 
  MMETSP0890-20130614|18220_1  33 LEYANEELQNdREIVLAAVTKGGFA 57 
                  788999****88***********96 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0013
    PF09837.4  78 ellaqafeaLer.adlVlgpaeDGGYyL 104
                  + l+ a ++L++  ++Vl + ++ GY L
  MMETSP0890-20130614|18220_1  68 DSLRYASQQLKNdYEIVLAAVTQSGYAL 95 
                  57899*******88************98 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   3.8e+03       5      22 ..       9      26 ..       7      29 .. 0.73
   2 ?    5.5   0.0    0.0045        12       4      23 ..      33      52 ..      31      60 .. 0.87
   3 ?    4.2   0.0     0.011        30       4      33 ..      70      99 ..      67     108 .. 0.84
   4 ?    2.4   0.0     0.042   1.1e+02       4      29 ..      95     120 ..      93     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.4
    PF07892.6  5 eYakkeltnpkriltstV 22
                 ++a + l + + i+ + +
  MMETSP0890-20130614|18220_1  9 QFASSALRKDRNIVLTAI 26
                 677778888888887776 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0045
    PF07892.6  4 eeYakkeltnpkriltstVk 23
                  eYa++el+n + i+ + V 
  MMETSP0890-20130614|18220_1 33 LEYANEELQNDREIVLAAVT 52
                 69*************99885 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.011
    PF07892.6  4 eeYakkeltnpkriltstVkveggelplvp 33
                   Ya ++l+n   i+ + V  +g  l++ +
  MMETSP0890-20130614|18220_1 70 LRYASQQLKNDYEIVLAAVTQSGYALKFAS 99
                 57*****************99988887766 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.042
    PF07892.6   4 eeYakkeltnpkriltstVkveggel 29 
                   ++a +e++n +  + + V  +g+ l
  MMETSP0890-20130614|18220_1  95 LKFASQEVKNDRGLVLAAVTQSGCAL 120
                  589*********99999998877665 PP

>> PF05785.7  Rho-activating domain of cytotoxic necrotizing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05     0.078      85     141 ..      70     125 ..       7     126 .] 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
    PF05785.7  85 kyynkakldnnlsiirvsNgarGavGikiaLsevkegkpliitsGaLSGCttvvAvk 141
                    y +++l+n+ +i+  +  ++G  ++k+a +evk+++ l++ + + SGC   +A +
  MMETSP0890-20130614|18220_1  70 LRYASQQLKNDYEIVLAAVTQSGY-ALKFASQEVKNDRGLVLAAVTQSGCALEYANE 125
                  458899*********999999995.8************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 413.62
//
Query:       MMETSP0890-20130614|18222_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   43.6   5.5    1.6e-11   43.6   3.8    2.0  2  PF05739.14 SNARE domain
  ------ inclusion threshold ------
      0.017   14.7   0.1      0.033   13.8   0.1    1.5  1  PF11514.3  Protein of unknown function (DUF3219)
      0.083   12.5   2.2      0.069   12.7   0.5    1.4  1  PF08145.7  BOP1NT (NUC169) domain
      0.095   12.1   1.9       0.21   11.0   1.3    1.6  1  PF00957.16 Synaptobrevin
       0.14   11.2   3.2       0.23   10.6   2.2    1.2  1  PF11945.3  WAHD domain of WASH complex
       0.17   12.1   6.2        1.1    9.5   0.2    2.5  2  PF09177.6  Syntaxin 6, N-terminal
       0.27   10.1   3.4       0.27   10.1   0.9    1.8  2  PF11727.3  Invariant surface glycoprotein
        1.2    9.3  11.8       0.87    9.7   2.6    2.7  3  PF05615.8  Tho complex subunit 7


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       0.7   1.2e+03      37      50 ..      56      69 ..      54      75 .. 0.59
   2 !   43.6   3.8   9.3e-15   1.6e-11       1      61 [.     159     219 ..     159     221 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHHHH CS
   PF05739.14 37 Idnnvesassrver 50
                 I++++e+a++ v++
  MMETSP0890-20130614|18222_1 56 IEEEIENAKDLVKK 69
                 56666666665554 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 9.3e-15
                  HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14   1 erdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalry 61 
                  er++++e+++ +++ ++q+  d++++v++Q e +d I++++ +a++r+++a+++l +a ++
  MMETSP0890-20130614|18222_1 159 ERARDIENINHRVSVVNQIYHDIASLVSNQQEEVDTIEAQISNAHNRTNKAQTQLVRAHNR 219
                  89******************************************************99665 PP

>> PF11514.3  Protein of unknown function (DUF3219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.9e-05     0.033      15      58 ..     156     199 ..     143     219 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.9e-05
                  EEEE-.SSS-EEEEEEEE-TTTHHHHTT-BS-S---EEETTTTE CS
    PF11514.3  15 ykeesvkgkkkiafdlkvtseeyhdiatllyekkfdvevPekal 58 
                   +ee  +  ++i   + v ++ yhdia l+ +++ +v+  e ++
  MMETSP0890-20130614|18222_1 156 LEEERARDIENINHRVSVVNQIYHDIASLVSNQQEEVDTIEAQI 199
                  567788999999*********************99999888765 PP

>> PF08145.7  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5     4e-05     0.069      59     164 ..      35     136 ..      21     144 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4e-05
    PF08145.7  59 likriqkgevpeeeldpyeevvelfk..eekeihplssapepkrrflpskseakkvaklvrairegeikpekekeeeeeeklydlWadeeekeekkkkleeipapklk 164
                  +++r+++ e+  ++ d+ ++++e +    ++ ++++ sa +p   f   + e+++ +  v air  + k+e++++     +   l a+++++eek     e+++++ +
  MMETSP0890-20130614|18222_1  35 IVRRLRRHETEYDDDDDDNNIIEEEIenAKDLVKKIDSALRPPDGFRLTRAEQREFRTCVSAIRAIKVKEERNNNG--FMNINHLGAKQNSDEEKI----ELAQRQPP 136
                  6799*****9999999999888654422788899******************************988877776664..566666666663333333....33333333 PP

>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   0.00012      0.21       3      86 ..     162     242 ..     160     247 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
   PF00957.16   3 dklskikaevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkmwwknmklliililvvlililiiiiv 86 
                  + +++i+  v+ v +i ++    v +++e++d+++ + ++  + +++ +   ++l r+   +  k++ ++ + +++ i+  i++
  MMETSP0890-20130614|18222_1 162 RDIENINHRVSVVNQIYHDIASLVSNQQEEVDTIEAQISNAHNRTNKAQ---TQLVRAHNRRSAKMKCCFYFAIALAIFATILI 242
                  7899*******************************99776666666554...45555555566666655555555555444433 PP

>> PF11945.3  WAHD domain of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.2   0.00013      0.23      12      71 ..     152     211 ..     148     222 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    PF11945.3  12 pDlRreeairqivdalqylekvseDvFdrisqrveknrarLeaieeRvklaqakiekikg 71 
                   D+R ee     ++ +++   v++ +++ i + v ++++++++ie  ++ a+ + +k ++
  MMETSP0890-20130614|18222_1 152 LDIRLEEERARDIENINHRVSVVNQIYHDIASLVSNQQEEVDTIEAQISNAHNRTNKAQT 211
                  699*9998888889999*99*******************************999998775 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00064       1.1      45      91 ..      53      99 ..      22     104 .. 0.69
   2 ?    5.0   0.7     0.017        29       9      58 ..     166     213 ..     145     225 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00064
    PF09177.6 45 enalesiewdledLeeavsvveknpekfglseeeisrRkqfvaeire 91
                 +n +e+  +  +dL + ++ + + p  f+l+++e  + +  v++ir 
  MMETSP0890-20130614|18222_1 53 NNIIEEEIENAKDLVKKIDSALRPPDGFRLTRAEQREFRTCVSAIRA 99
                 34444444556799999***999********************9985 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.017
    PF09177.6   9 evqksidkleslyrsweelrsdstsskelkeltkeLenalesiewdledL 58 
                  ++++ ++ ++++y+   +l s+++  +e++  + +++na + +++   +L
  MMETSP0890-20130614|18222_1 166 NINHRVSVVNQIYHDIASLVSNQQ--EEVDTIEAQISNAHNRTNKAQTQL 213
                  566778888888888888888877..777777777777776666555444 PP

>> PF11727.3  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   5.4e+02      83     113 ..      37      68 ..      22      81 .. 0.64
   2 ?   10.1   0.9   0.00016      0.27      59     127 ..     155     225 ..     146     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.31
    PF11727.3  83 ekvesls.dsklsdsdkkkikellekakdkik 113
                   +++  + + +++d+d++ i+e +e+akd +k
  MMETSP0890-20130614|18222_1  37 RRLRRHEtEYDDDDDDNNIIEEEIENAKDLVK 68 
                  44443323666777777777777777776544 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00016
    PF11727.3  59 elvketekfaaeikealervkaylekvesl.s.dsklsdsdkkkikellekakdkikealkeakkagreie 127
                  +l++e ++++++i++ ++ v++   ++ sl s + ++ d+ +++i ++ ++  +++++ ++  ++  ++++
  MMETSP0890-20130614|18222_1 155 RLEEERARDIENINHRVSVVNQIYHDIASLvSnQQEEVDTIEAQISNAHNRTNKAQTQLVRAHNRRSAKMK 225
                  7999999***********************956*****************999999999998777777765 PP

>> PF05615.8  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.3     0.024        41      72     127 ..      42     100 ..      24     110 .. 0.63
   2 ?   -2.0   0.1       2.1   3.5e+03      92     108 ..     144     160 ..     118     164 .. 0.55
   3 ?    9.7   2.6   0.00051      0.87      78     117 ..     187     226 ..     140     227 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.024
    PF05615.8  72 nekerenYeaekeeiektiealkdeieelrkeLee...aketrknrkeydeLaekitsn 127
                   e+e+++ ++ +  ie++ie++kd +++  + L+     + tr++  e++  +++i++ 
  MMETSP0890-20130614|18222_1  42 HETEYDDDDDDNNIIEEEIENAKDLVKKIDSALRPpdgFRLTRAEQREFRTCVSAIRAI 100
                  34445555566677**********99998888865111344444444666666666655 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.1
    PF05615.8  92 alkdeieelrkeLeeak 108
                   + +  +el  +Lee +
  MMETSP0890-20130614|18222_1 144 LMEEGLSELDIRLEEER 160
                  33334666666666655 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00051
    PF05615.8  78 nYeaekeeiektiealkdeieelrkeLeeaketrknrkey 117
                  n ++e + ie++i+++++++ + + +L +a  +r  ++++
  MMETSP0890-20130614|18222_1 187 NQQEEVDTIEAQISNAHNRTNKAQTQLVRAHNRRSAKMKC 226
                  5578899***************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1662  (0.121562); expected 273.4 (0.02)
Passed bias filter:                      870  (0.0636337); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.46s 00:00:01.19 Elapsed: 00:00:00.94
# Mc/sec: 652.62
//
Query:       MMETSP0890-20130614|18226_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.97
# Mc/sec: 442.21
//
Query:       MMETSP0890-20130614|18228_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 543.79
//
Query:       MMETSP0890-20130614|18225_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-11   43.8   0.5    2.9e-09   37.0   0.1    3.0  3  PF12796.2  Ankyrin repeats (3 copies)
    1.3e-05   25.4   3.5      0.057   13.8   0.1    3.9  3  PF13637.1  Ankyrin repeats (many copies)
    2.3e-05   24.0   2.9       0.77   10.0   0.0    5.1  5  PF13606.1  Ankyrin repeat
    4.2e-05   23.5   4.8        1.2    9.3   0.1    4.8  6  PF13857.1  Ankyrin repeats (many copies)
    0.00038   19.9   0.0          8    6.3   0.0    4.6  5  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.57   1.6e+03      63      85 ..     154     176 ..     103     178 .. 0.78
   2 !   37.0   0.1   1.1e-12   2.9e-09       3      82 ..     183     258 ..     182     263 .. 0.91
   3 ?    3.1   0.0      0.04   1.1e+02       1      24 [.     267     290 ..     266     311 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.57
    PF12796.2  63 LhlAvrnghlelvklLlekgadv 85 
                  L + v+++    +++Lle+  d+
  MMETSP0890-20130614|18225_1 154 LEAFVEYKAENWIHWLLEANPDL 176
                  44457777777788888875554 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 1.1e-12
    PF12796.2   3 lAaengnlelvklLle.kgadvdlgetpLh.lAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekg 82 
                  +Aa++gnl+l+++  e k+a +   +t L+  A e+g+l i+++L e++ ++n+k     +  ++A+ ngh+ ++++Llek 
  MMETSP0890-20130614|18225_1 183 FAAKHGNLDLLRQVYEsKQAFIL-EDTMLStFATEKGHLHILQFLYEQKVEMNHK-----NLAFWACTNGHIHVMDWLLEKN 258
                  69*************95556655.8999986899********************8.....9******************984 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.04
    PF12796.2   1 LhlAaengnlelvklLlekgadvd 24 
                  L +Aa +++ +lv++ ++ g  +d
  MMETSP0890-20130614|18225_1 267 LANAALRNQFDLVRYYHARGVQID 290
                  567888899999999988888887 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0004       1.1       6      53 ..     182     226 ..     180     227 .. 0.81
   2 !   13.8   0.1   2.1e-05     0.057      11      54 .]     217     255 ..     210     255 .. 0.92
   3 !    5.8   0.1     0.007        19       5      30 ..     267     292 ..     265     297 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0004
    PF13637.1   6 hyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  + aa++g+l+l++  +e+++       + + +  +A ++g+++il++L
  MMETSP0890-20130614|18225_1 182 RFAAKHGNLDLLRQVYESKQA-FI--LEDTMLSTFATEKGHLHILQFL 226
                  679*************97642.22..356669999************9 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.1e-05
    PF13637.1  11 sgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  +g+l ++++L+e++++ n+++     +   A+ +g+i++  +Ll
  MMETSP0890-20130614|18225_1 217 KGHLHILQFLYEQKVEMNHKN-----LAFWACTNGHIHVMDWLL 255
                  89******************6.....5999*************8 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.007
    PF13637.1   5 LhyaaisgrlelvklLlekgidinrt 30 
                  L +aa  +  +lv++ +++g++i+++
  MMETSP0890-20130614|18225_1 267 LANAALRNQFDLVRYYHARGVQIDHL 292
                  678999*****************986 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0056        15      10      29 ..     158     177 ..     150     178 .. 0.83
   2 ?   -0.7   0.0       0.8   2.2e+03       9      19 ..     184     194 ..     182     196 .. 0.87
   3 ?    0.8   0.0      0.28   7.6e+02       4      22 ..     208     227 ..     206     235 .. 0.77
   4 !   10.0   0.0   0.00028      0.77       6      24 ..     239     257 ..     234     265 .. 0.87
   5 ?    2.2   0.0     0.091   2.5e+02       9      29 ..     270     290 ..     261     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0056
    PF13606.1  10 asngrielveaLlengadin 29 
                  ++++  +++++Lle+ +d+ 
  MMETSP0890-20130614|18225_1 158 VEYKAENWIHWLLEANPDLR 177
                  6788999**********986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.8
    PF13606.1   9 Aasngrielve 19 
                  Aa++g+++l++
  MMETSP0890-20130614|18225_1 184 AAKHGNLDLLR 194
                  9******9986 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.28
    PF13606.1   4 TpLhl.AasngrielveaLl 22 
                  T L + A ++g++ ++++L 
  MMETSP0890-20130614|18225_1 208 TMLSTfATEKGHLHILQFLY 227
                  555533999********995 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00028
    PF13606.1   6 LhlAasngrielveaLlen 24 
                   ++A+ ng+i ++++Lle+
  MMETSP0890-20130614|18225_1 239 AFWACTNGHIHVMDWLLEK 257
                  589**************96 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.091
    PF13606.1   9 AasngrielveaLlengadin 29 
                  Aa +++ +lv+++  +g++i+
  MMETSP0890-20130614|18225_1 270 AALRNQFDLVRYYHARGVQID 290
                  8999********999998887 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.4   6.4e+03      29      45 ..      25      43 ..      24      45 .. 0.79
   2 ?   -3.0   0.0       3.2   8.9e+03      34      43 ..     168     177 ..     162     181 .. 0.67
   3 ?    0.0   0.0      0.36   9.9e+02      22      34 ..     183     195 ..     182     202 .. 0.86
   4 ?    4.0   0.0      0.02        55      23      46 ..     214     237 ..     204     239 .. 0.86
   5 !    7.8   0.0    0.0013       3.5      22      49 ..     241     261 ..     241     268 .. 0.78
   6 !    9.3   0.1   0.00045       1.2      20      46 ..     267     293 ..     265     296 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.4
    PF13857.1 29 levvrlLl..apgadlnlr 45
                 l+++r+L+  +p+a +n+ 
  MMETSP0890-20130614|18225_1 25 LDALRKLVslDPQAMYNAI 43
                 7899999988888888865 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.2
    PF13857.1  34 lLlapgadln 43 
                  +Ll++++dl+
  MMETSP0890-20130614|18225_1 168 WLLEANPDLR 177
                  8885555554 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.36
    PF13857.1  22 lAakggalevvrl 34 
                  +Aak+g+l+++r 
  MMETSP0890-20130614|18225_1 183 FAAKHGNLDLLRQ 195
                  69*******9985 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.02
    PF13857.1  23 AakggalevvrlLlapgadlnlrd 46 
                  A ++g+l+++++L+++ +  n+++
  MMETSP0890-20130614|18225_1 214 ATEKGHLHILQFLYEQKVEMNHKN 237
                  6679**********9999888876 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0013
    PF13857.1  22 lAakggalevvrlLlapgadlnlrdsdg 49 
                  +A+ +g+ +v+++Ll        +++ +
  MMETSP0890-20130614|18225_1 241 WACTNGHIHVMDWLL-------EKNFAM 261
                  7**************.......555555 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 0.00045
    PF13857.1  20 LhlAakggalevvrlLlapgadlnlrd 46 
                  L +Aa +++ ++vr+ +a+g+ +++ +
  MMETSP0890-20130614|18225_1 267 LANAALRNQFDLVRYYHARGVQIDHLT 293
                  899*****************9998765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.26     7e+02      13      29 ..     161     177 ..     157     179 .. 0.71
   2 ?   -0.8   0.0      0.53   1.4e+03       9      19 ..     184     194 ..     183     196 .. 0.85
   3 !    5.3   0.0     0.006        16       9      32 ..     214     237 ..     212     238 .. 0.92
   4 !    6.3   0.0    0.0029         8       8      24 ..     241     257 ..     240     259 .. 0.92
   5 ?    0.3   0.0      0.23   6.4e+02       9      32 ..     270     293 ..     266     294 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.26
                  THHHHHHHHHHTTSSTT CS
   PF00023.25  13 gnlevvklLlsqGAdln 29 
                     + + +Ll+++ dl 
  MMETSP0890-20130614|18225_1 161 KAENWIHWLLEANPDLR 177
                  5678899****666654 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.53
                  HHHTTHHHHHH CS
   PF00023.25   9 Aalrgnlevvk 19 
                  Aa++gnl+ ++
  MMETSP0890-20130614|18225_1 184 AAKHGNLDLLR 194
                  9*****99865 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.006
                  HHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                  A ++g+l ++++L +q  + n+++
  MMETSP0890-20130614|18225_1 214 ATEKGHLHILQFLYEQKVEMNHKN 237
                  7789****************9987 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0029
                  HHHHTTHHHHHHHHHHT CS
   PF00023.25   8 lAalrgnlevvklLlsq 24 
                  +A+ +g++ v+ +Ll++
  MMETSP0890-20130614|18225_1 241 WACTNGHIHVMDWLLEK 257
                  8**************85 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.23
                  HHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                  Aalr++ + v++   +G  +++ +
  MMETSP0890-20130614|18225_1 270 AALRNQFDLVRYYHARGVQIDHLT 293
                  9*********99888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.20s 00:00:00.84 Elapsed: 00:00:00.83
# Mc/sec: 984.53
//
Query:       MMETSP0890-20130614|18227_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.6   5.2       0.64    9.8   0.7    3.1  3  PF13424.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.1   1.4e+03      29      69 ..      73     114 ..      70     117 .. 0.70
   2 ?    9.8   0.7   4.7e-05      0.64      21      68 ..     164     213 ..     158     215 .. 0.89
   3 ?    6.7   0.0   0.00046       6.2      26      55 ..     213     242 ..     212     252 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.1
    PF13424.1  29 ekalel.lrelgddhpdtaralnnlanlylalgdydeAleyl 69 
                  ek l++  +   ++ +  + +  +l+ l+ +  ++ e l++l
  MMETSP0890-20130614|18227_1  73 EKLLDIvKANETNTELAQCEIVSELGMLHFQSDQLVEGLRLL 114
                  677777666666666666777888999988888877766665 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 4.7e-05
    PF13424.1  21 ydeAlelyekalel.lrelgd.dhpdtaralnnlanlylalgdydeAley 68 
                  +++A+ l+ + l++   +++   ++dt+r ++++a +  ++g  d+A++ 
  MMETSP0890-20130614|18227_1 164 LEKAEILCSHILAIdTHLYPTaQNADTLRHYYQYAHIRFQQGYIDDARDT 213
                  689***********88888763589********************99986 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00046
    PF13424.1  26 elyekalellrelgddhpdtaralnnlanl 55 
                  +ly +++e  r lg+ h  t+ ++  la++
  MMETSP0890-20130614|18227_1 213 TLYSTVVESKRILGPKHELTLALYSLLAYI 242
                  689999**********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1753  (0.128218); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.87
# Mc/sec: 851.12
//
Query:       MMETSP0890-20130614|18244_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-21   74.1   0.9    7.8e-21   73.9   0.6    1.0  1  PF01226.12 Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> PF01226.12  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.6   5.7e-25   7.8e-21       4     104 ..      31     135 .]      28     135 .] 0.94

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 5.7e-25
                  ------------HHHHHHHHHHHHHH-------HHHHHHHHT---...TTS----TTT----G.GG---HHHHH-----SSTTTC.HHHHCC----SSHHHHHHH CS
   PF01226.12   4 iveavvaagekkakksllkllllgilAGafialgallalvvasgl...aaaepglakllgglv.FpvGlilvvllgaeLfTgntlllvlallekkvslkkllrnw 104
                  +++a++ +g +ka+++  kll+lg+l+G+ i+lga+l++++++++   ++++pg ++ l+g++  p+Gli+v+ +g+eL+Tgn++l+ +a++++k++lk+llrnw
  MMETSP0890-20130614|18244_1  31 VYDAAMTTGAAKASLPNAKLLTLGFLSGCHIGLGAFLMISCGGMCpglKETNPGAMRALSGVFgLPTGLIMVLGGGGELVTGNFALIAAAWANGKATLKNLLRNW 135
                  7899*****************************************9998888888888877666***************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.71
# Mc/sec: 455.65
//
Query:       MMETSP0890-20130614|18269_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-07   29.6   0.8    6.1e-07   28.5   0.6    1.6  1  PF14304.1  Transcription termination and cleavage factor C-terminal
    7.5e-07   28.5   0.0    1.4e-06   27.7   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.6e-06   27.9   0.0    2.8e-06   27.1   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
     0.0012   18.5   0.0     0.0023   17.6   0.0    1.4  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF14304.1  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.6   1.8e-10   6.1e-07       9      39 ..     155     185 ..     153     189 .] 0.94

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.8e-10
    PF14304.1   9 eLlqQVlqLseadidaLPPeeresIleLRqq 39 
                  eL+ Q l+L+e++++ LPPe r +   LR q
  MMETSP0890-20130614|18269_1 155 ELIAQALALTEDQLALLPPERRAKLERLRAQ 185
                  8************************999988 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   4.1e-10   1.4e-06       1      59 [.       5      57 ..       5      65 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 4.1e-10
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHH CS
   PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAleal 59
                 +fV+nL   ++ e L  +F ++G+++ ++l +d       +a + F+++e++++A++ l
  MMETSP0890-20130614|18269_1  5 VFVTNLVVGTSTEILTGMFAGCGEVKYVRLAPD-----GSYALIVFATPESVDNAIA-L 57
                 8********************************.....9*****************8.4 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     8e-10   2.8e-06       1      58 [.       5      57 ..       5      64 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 8e-10
    PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkk 58
                 ++v++l   ++ e l+ +f+++g v+ vr+ ++      ++A++ f+++e++++a++ 
  MMETSP0890-20130614|18269_1  5 VFVTNLVVGTSTEILTGMFAGCGEVKYVRLAPD-----GSYALIVFATPESVDNAIAL 57
                 79999999************************8.....89***************986 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.6e-07    0.0023       5      39 ..      23      56 ..      22      60 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.6e-07
    PF13893.1  5 fskfGkverikifrkkggqAfvefdtveaArkake 39
                 f+ +G+v+ +++ +++ ++A++ f+t+e+ ++a++
  MMETSP0890-20130614|18269_1 23 FAGCGEVKYVRLAPDG-SYALIVFATPESVDNAIA 56
                 5669**********99.***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 647.02
//
Query:       MMETSP0890-20130614|18271_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   37.8   0.0    1.8e-09   37.3   0.0    1.3  1  PF09398.5 FOP N terminal dimerisation domain
  ------ inclusion threshold ------
      0.033   13.7   2.0      0.046   13.2   0.4    1.9  2  PF11590.3 DNA polymerase catalytic subunit Pol


Domain annotation for each model (and alignments):
>> PF09398.5  FOP N terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.6e-13   1.8e-09      18      80 ..      54     118 ..      40     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.6e-13
    PF09398.5  18 GRlvaeLikefLeffeldftlavfqpEasleeeledRealakeLniveses..akskPLllevvr 80 
                     v eL++efL f  +  tl+vf++E+s   +  +Re +a +L++++s +  + + PL++++++
  MMETSP0890-20130614|18271_1  54 TVVVSELFREFLTFAGYTQTLSVFEAESSADIGKLSRELIAADLGVTQSPAsdGEALPLIYGLIE 118
                  56799*****************************************9986411567899999985 PP

>> PF11590.3  DNA polymerase catalytic subunit Pol
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   6.7e-06     0.046       2      25 ..      23      41 ..      22      43 .. 0.90
   2 ?   -2.3   0.0      0.49   3.4e+03       7      15 ..      56      64 ..      52      72 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.7e-06
    PF11590.3  2 evaeRLssAgFatirsgaGlpvse 25
                 ev++RL++++F+ + +ga     e
  MMETSP0890-20130614|18271_1 23 EVRARLRAEIFRLVDAGA-----E 41
                 89***************9.....3 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.49
    PF11590.3  7 LssAgFati 15
                 ++s+ F++ 
  MMETSP0890-20130614|18271_1 56 VVSELFREF 64
                 678888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 434.12
//
Query:       MMETSP0890-20130614|18279_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-37  126.5   0.1    2.9e-23   82.1   0.1    2.2  2  PF01230.18 HIT domain
    2.5e-10   40.4   0.1    1.4e-07   31.6   0.0    2.3  2  PF11969.3  Scavenger mRNA decapping enzyme C-term binding
    4.6e-06   26.1   0.2      0.004   16.6   0.0    2.4  2  PF04677.10 Protein similar to CwfJ C-terminus 1


Domain annotation for each model (and alignments):
>> PF01230.18  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.6e-14   7.4e-11      21      96 ..      34     103 ..      27     105 .. 0.93
   2 !   82.1   0.1   6.4e-27   2.9e-23       6      96 ..     179     269 ..     175     271 .. 0.97

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.6e-14
   PF01230.18  21 idpkapghlLvipkkhlselhdlteeelakllslvkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                   +p  pgh+ + pk+++++l dl++ee+ +l ++++ v ++  +      +++++++g +agq ++h H+Hvipr 
  MMETSP0890-20130614|18279_1  34 LSPLLPGHVILAPKRQVARLIDLNDEEFDELCAAIRLVQNDAPA------FNIAMKDGSAAGQPIPHCHFHVIPRT 103
                  67999********************************9998887......77**********************96 PP

  == domain 2    score: 82.1 bits;  conditional E-value: 6.4e-27
   PF01230.18   6 stvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllslvkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                  s+v+y ++l++ +++ +p +pgh+Lvip++ +s++ +lt++e  +l++ ++++ + + k++++++ +++i++g +agqsv+h+HiH++pr+
  MMETSP0890-20130614|18279_1 179 SQVFYATPLTYTLVNLKPLVPGHVLVIPRRIVSNVRSLTDAENHDLWRCARHIERFIIKHYSASAANLAIQDGVAAGQSVPHVHIHILPRS 269
                  79***************************************************************************************97 PP

>> PF11969.3  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0019       8.6      31     103 ..      36     101 ..      22     109 .. 0.86
   2 !   31.6   0.0     3e-11   1.4e-07      14     103 ..     179     267 ..     171     272 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0019
                  -SSSS-EEEEESS.--SSGGG--TTCCCHHHHHHHHHHHHHHH-------EEE----------S-S--EEEE- CS
    PF11969.3  31 pkaslHllvipkrkdikslrdltkehlplLkemrekakkvieekynedlnkdelrlgfhyppsvyhLHlHvis 103
                  p  + H++  pkr +++ l dl++e+ + L +  + +++ +   +++      ++ g  +++ + h H+Hvi 
  MMETSP0890-20130614|18279_1  36 PLLPGHVILAPKR-QVARLIDLNDEEFDELCAAIRLVQNDAPAFNIA------MKDGSAAGQPIPHCHFHVIP 101
                  55677999*****.***********9999999999999988887766......77799999999999999985 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 3e-11
                  B-EEEE-SSEEEEE-SS-SSSS-EEEEESS.--SSGGG--TTCCCHHHHHHHHHHHHHHH-------EEE----------S-S--EEEE- CS
    PF11969.3  14 envvyedekavvfkDikpkaslHllvipkrkdikslrdltkehlplLkemrekakkvieekynedlnkdelrlgfhyppsvyhLHlHvis 103
                  ++v y +  + ++ ++kp  + H+lvip+r  ++++r+lt+ +   L +  + +++ i ++y ++     ++ g+ +++sv h+H+H++ 
  MMETSP0890-20130614|18279_1 179 SQVFYATPLTYTLVNLKPLVPGHVLVIPRR-IVSNVRSLTDAENHDLWRCARHIERFIIKHYSASAANLAIQDGVAAGQSVPHVHIHILP 267
                  5666777788889999**************.*******************************99999999*****************986 PP

>> PF04677.10  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00065         3      35      73 ..      29      66 ..      15     103 .. 0.72
   2 !   16.6   0.0   8.8e-07     0.004      33     110 ..     186     269 ..     163     273 .] 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00065
   PF04677.10 35 vYlalpk.gpLssgHvliipieHisallsldeevldeirk 73
                 +Y+a  +  pL  gHv++ p   ++ l+ l++e+ de+ +
  MMETSP0890-20130614|18279_1 29 TYCA--ElSPLLPGHVILAPKRQVARLIDLNDEEFDELCA 66
                 5554..44799*************************9864 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 8.8e-07
   PF04677.10  33 nkvYlalpkgpLssgHvliipieHisallslde....evldeirkfrkalvkmykkqdkdavvfEis..sersvHlaiqvipvp 110
                    +Y  +  +pL+ gHvl+ip   +s+++sl +    +++   r+ ++ ++k y++   ++ + + +   ++ +H++i+++p +
  MMETSP0890-20130614|18279_1 186 PLTYTLVNLKPLVPGHVLVIPRRIVSNVRSLTDaenhDLWRCARHIERFIIKHYSASAANLAIQDGVaaGQSVPHVHIHILPRS 269
                  567877777******************99998766678888888899999999999888887777666789999*****99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 860.80
//
Query:       MMETSP0890-20130614|18293_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.34s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 221.48
//
Query:       MMETSP0890-20130614|18303_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.55
# Mc/sec: 684.05
//
Query:       MMETSP0890-20130614|18314_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-11   43.4   1.4    4.2e-11   42.5   1.0    1.5  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   1.0   3.1e-15   4.2e-11      79     125 .]      21      67 ..       7      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3.1e-15
                  EES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEEE CS
   PF00156.22  79 esrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavlv 125
                    +  +   g++vl++DD++atGgTl+aai+l+k+ g+ ++++a++v
  MMETSP0890-20130614|18314_1  21 GIPRGAVKPGDKVLLIDDLVATGGTLIAAIDLVKRCGGSVIEAACVV 67 
                  556667788************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 491.67
//
Query:       MMETSP0890-20130614|18315_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-07   28.4   0.0    2.9e-05   23.3   0.0    2.7  3  PF14305.1 TupA-like ATPgrasp
      0.003   17.2   0.0       0.27   10.8   0.0    2.3  2  PF13535.1 ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF14305.1  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.2   1.4e+03      56      74 ..     143     161 ..     125     181 .. 0.82
   2 ?    1.2   0.0     0.024   1.6e+02     123     160 ..     194     232 ..     169     241 .. 0.66
   3 !   23.3   0.0   4.2e-09   2.9e-05     181     221 ..     280     321 ..     273     338 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.2
    PF14305.1  56 pkkfviKpthssgslvivr 74 
                   + +v+Kp+++  s+++  
  MMETSP0890-20130614|18315_1 143 RQAYVLKPVDGFASRGVSL 161
                  5789*****9988888865 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.024
    PF14305.1 123 akelrDyKffcFngkkv.fiqveidreeekknciydldw 160
                   + l  yKff F g    ++ ++ +r++++ +++   ++
  MMETSP0890-20130614|18315_1 194 TTRLSEYKFFMFGGICGgILIISGNRTIRQCRAWINENF 232
                  345799******995441344455556666666665555 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 4.2e-09
    PF14305.1 181 leemvelaetLskd.fpfvRvDfykvedklyfGElTfypgsg 221
                   +emv+ a +Ls+    f+R+D++++ +++++GE+T+ p  g
  MMETSP0890-20130614|18315_1 280 WDEMVNQARRLSSAlGVFMRIDLFASTKGPVLGEFTPFPMHG 321
                  69************889********************98776 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   3.9e-05      0.27       8      58 ..     111     162 ..     105     202 .. 0.72
   2 !    4.0   0.0    0.0047        32     125     175 ..     266     314 ..     245     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.9e-05
    PF13535.1   8 mrellaeaglpvpr.falvdseedleaaaeeigfpvvlKPadgagslgvrrv 58 
                   +e++++ ++ +pr   +v+++++  +   +    +vlKP+dg++s+gv++v
  MMETSP0890-20130614|18315_1 111 GYEFARSMDVLTPRvIGCVQNITEGVNPFPDTRQAYVLKPVDGFASRGVSLV 162
                  55666666666665322444555555544555579**************996 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0047
    PF13535.1 125 elgsvspseeple..ealrelaerllkalglkngvfHlEfkltpdGrlvliEi 175
                  +++ + +s+  ++  ++++++a+rl  alg+   ++ ++++ + +G+ vl E 
  MMETSP0890-20130614|18315_1 266 PCDDEFVSRLRPPfwDEMVNQARRLSSALGV---FMRIDLFASTKGP-VLGEF 314
                  5555666666666789**************9...************7.99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:01.25
# Mc/sec: 899.11
//
Query:       MMETSP0890-20130614|18366_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-22   76.9   0.0      1e-21   76.8   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    3.2e-12   45.9   0.0    1.3e-07   31.1   0.0    2.0  2  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
        3.5    7.0   5.6         25    4.3   0.2    3.3  3  PF01744.15 GLTT repeat (6 copies)


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   2.3e-25     1e-21      23      89 ..       3      69 ..       1      70 [] 0.67

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 2.3e-25
    PF13306.1 23 vtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaFsncsslksinip 89
                 +t+Ig++aF  c+ l++++l+  lt+ig+ aF++c+slt++t+p+ lt+i+++aF++c+sl++i++p
  MMETSP0890-20130614|18366_1  3 LTTIGDNAFFACTRLTQLSLSAGLTTIGKGAFYHCTSLTQVTLPEGLTTIDDSAFNGCTSLTQITLP 69
                 5677777777777777777777777777777777777777777777777777777777777777765 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.9e-11   1.3e-07      13      56 ..       3      45 ..       2      47 .. 0.96
   2 !   13.1   0.0   1.2e-05     0.055      37      56 ..      49      68 ..      47      69 .. 0.65

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.9e-11
    PF13855.1 13 lkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 l++i+d+aF  +++L+ L+Ls   l++i ++af +++sL+++ L
  MMETSP0890-20130614|18366_1  3 LTTIGDNAFFACTRLTQLSLS-AGLTTIGKGAFYHCTSLTQVTL 45
                 89*******************.******************9987 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.2e-05
    PF13855.1 37 lksispeafkgLpsLreLnL 56
                 l++i++ af+g++sL+++ L
  MMETSP0890-20130614|18366_1 49 LTTIDDSAFNGCTSLTQITL 68
                 56666667777777766655 PP

>> PF01744.15  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.013        61      16      21 ..       2       7 ..       1       7 [. 0.41
   2 ?    4.3   0.2    0.0055        25      10      16 ..      24      30 ..      17      30 .. 0.66
   3 ?    0.6   0.0     0.076   3.5e+02      16      19 ..      48      51 ..      47      53 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.013
   PF01744.15 16 GLtTlG 21
                 GLtT+G
  MMETSP0890-20130614|18366_1  2 GLTTIG 7 
                 344443 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0055
   PF01744.15 10 lGLvTmG 16
                 +GL+T+G
  MMETSP0890-20130614|18366_1 24 AGLTTIG 30
                 4555544 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.076
   PF01744.15 16 GLtT 19
                 GLtT
  MMETSP0890-20130614|18366_1 48 GLTT 51
                 3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 258.07
//
Query:       MMETSP0890-20130614|18367_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   18.5   0.0        5.4    6.9   0.0    3.6  3  PF08590.5 Domain of unknown function (DUF1771)
  ------ inclusion threshold ------
       0.18   11.5   1.2        6.3    6.5   0.1    2.6  2  PF07560.6 Domain of Unknown Function (DUF1539)


Domain annotation for each model (and alignments):
>> PF08590.5  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.014        96       1      15 [.       8      22 ..       8      35 .. 0.81
   2 !    4.1   0.0     0.006        41       1      25 [.      76     100 ..      76     104 .. 0.93
   3 !    6.9   0.0    0.0008       5.4      22      52 ..     279     309 ..     275     312 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.014
                 XXXXXXXXXXXXXXX CS
    PF08590.5  1 dYerlRkeAdehgkk 15
                 +Ye++R+ A e+g++
  MMETSP0890-20130614|18367_1  8 NYENHRDSATEWGEQ 22
                 5***********987 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.006
                  XXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF08590.5   1 dYerlRkeAdehgkkraelfqkAae 25 
                  d+er R + de++k +  l++++++
  MMETSP0890-20130614|18367_1  76 DWERSRGKSDELYKDMLALLDEPQK 100
                  8********************9985 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0008
                  XXXXXXXXXXXXXXXXXX-----------SH CS
    PF08590.5  22 kAaeAyrrGdkaaAkeLseegkkhgekaeea 52 
                  +A e +r+G + +A  L +e+k+++++   +
  MMETSP0890-20130614|18367_1 279 RALEIRREGHTDEAITLMREAKALEQQLVGL 309
                  78899*******************9997655 PP

>> PF07560.6  Domain of Unknown Function (DUF1539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.011        72      68      89 ..      87     108 ..      39     118 .. 0.80
   2 ?    6.5   0.1   0.00093       6.3      26      75 ..     251     301 ..     229     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.011
    PF07560.6  68 tlkkllelLkdptiskekKlel 89 
                  + k +l+lL++p+ +++kK ++
  MMETSP0890-20130614|18367_1  87 LYKDMLALLDEPQKPQKKKTSA 108
                  45678999***********987 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00093
    PF07560.6  26 LekeikklaqnlrdeWkkilkylskkesseveseeaqalfr.stlkkllel 75 
                  L++ ++++++n ++e ++i +++++k+s+  e + + ++ + +tl +  ++
  MMETSP0890-20130614|18367_1 251 LQNSLSSSTKNGEEESNSITDIIEQKRSRALEIRREGHTDEaITLMREAKA 301
                  9*******************************9999998651455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.67
# Mc/sec: 1237.52
//
Query:       MMETSP0890-20130614|18409_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   23.9   1.7      0.093   12.8   0.1    3.0  3  PF10629.4 Protein of unknown function (DUF2475)


Domain annotation for each model (and alignments):
>> PF10629.4  Protein of unknown function (DUF2475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.48   6.6e+03      29      47 ..      15      33 ..      14      44 .. 0.73
   2 !   12.8   0.1   6.8e-06     0.093       3      14 ..     147     158 ..     145     165 .. 0.90
   3 !    9.1   0.0   9.8e-05       1.3       3      15 ..     186     198 ..     185     201 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.48
    PF10629.4 29 kllqDprvaaleksvlsds 47
                 k ++D++ a ++++v++++
  MMETSP0890-20130614|18409_1 15 KEFRDNKFAGAAELVEKTR 33
                 5588888888888887764 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 6.8e-06
    PF10629.4   3 gliPGYaGyvPq 14 
                  ++iPGY+G++P 
  MMETSP0890-20130614|18409_1 147 HHIPGYTGFIPN 158
                  9**********6 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 9.8e-05
    PF10629.4   3 gliPGYaGyvPql 15 
                  +++P+Y+G++P+ 
  MMETSP0890-20130614|18409_1 186 HNLPNYTGFIPTE 198
                  899********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 879.97
//
Query:       MMETSP0890-20130614|18410_1  [L=895]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:01.11
# Mc/sec: 1932.20
//
Query:       MMETSP0890-20130614|18408_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-16   57.5   0.1    1.1e-15   56.6   0.0    1.4  1  PF00240.18 Ubiquitin family
    1.5e-10   40.4   0.0    6.7e-10   38.3   0.0    2.2  2  PF00627.26 UBA/TS-N domain
    9.1e-07   28.3   0.1    1.7e-06   27.5   0.1    1.4  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.029   14.4   0.0      0.053   13.5   0.0    1.4  1  PF10302.4  DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   3.1e-19   1.1e-15       5      65 ..      10      71 ..       7      74 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 3.1e-19
                 SEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BE.TTTSBTTTTTT-TTEEEEEE CS
   PF00240.18  5 gktitlevepsdtvselKekieekegipvdqqrLiysGkvL.eDdrtlseyniqdgstlhlv 65
                 g+++t e+e++  v+elK+ i++k +ip++ qrLiy+G+v+ +++  l+ y+i++gst+hl 
  MMETSP0890-20130614|18408_1 10 GRQFTTEFEKDILVRELKQMIADKAEIPANAQRLIYKGRVMkDEELVLEKYGIEEGSTIHLL 71
                 568999***********************************777788999**********97 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   5.6e+03      22      31 ..     216     225 ..     216     226 .. 0.88
   2 !   38.3   0.0     2e-13   6.7e-10       2      37 .]     356     392 ..     355     392 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.7
                  HHHHTTTSHH CS
   PF00627.26  22 ALratnnnvE 31 
                  ALr+ +++v+
  MMETSP0890-20130614|18408_1 216 ALRRMYQDVQ 225
                  99*9999998 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 2e-13
                  THHHHHHHHH--.--HHHHHHHHHHTTTSHHHHHHHH CS
   PF00627.26   2 deeaiqqLreMG.fsreeakkALratnnnvErAveyL 37 
                  +e++i qL ++G ++r+++ +AL at++n+E+A+++L
  MMETSP0890-20130614|18408_1 356 NEDTISQLIDLGfADRSANERALAATGGNIEAAINWL 392
                  89**********77777*******************9 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   4.9e-10   1.7e-06      11      70 ..      11      70 ..       2      71 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 4.9e-10
                 --EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTS.BGGGSS--TTEEEEE CS
    PF11976.3 11 kevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpnd.tvedldiedgdtidv 70
                  +++++ ++d  +++L++  ++k +ip+ + +rLi++G+ +++++ ++e ++ie+g+ti++
  MMETSP0890-20130614|18408_1 11 RQFTTEFEKDILVRELKQMIADKAEIPA-NAQRLIYKGRVMKDEElVLEKYGIEEGSTIHL 70
                 567778889999****************.************877625699*********98 PP

>> PF10302.4  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.053      22      64 ..      19      59 ..       2     101 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
    PF10302.4 22 nsltvaeLkrliRerlpgdlsrrrLrlIyaGkvLndesalasd 64
                 + + v+eLk++i ++   +   +  rlIy+G+v++de+ + ++
  MMETSP0890-20130614|18408_1 19 KDILVRELKQMIADKA--EIPANAQRLIYKGRVMKDEELVLEK 59
                 457799*********9..77777889**********9866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.43s 00:00:01.11 Elapsed: 00:00:00.97
# Mc/sec: 980.78
//
Query:       MMETSP0890-20130614|18407_1  [L=1116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-31  109.0   0.0    5.5e-31  107.8   0.0    1.5  1  PF00208.16 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
    7.1e-14   50.1   3.7    7.6e-06   23.5   0.0    4.1  4  PF05088.7  Bacterial NAD-glutamate dehydrogenase


Domain annotation for each model (and alignments):
>> PF00208.16  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0     8e-35   5.5e-31       2     200 ..     704     921 ..     704     942 .. 0.81

  Alignments for each domain:
  == domain 1    score: 107.8 bits;  conditional E-value: 8e-35
                  --.TTCTSCCC---HHHHHHHHHH.TT-.-CCC-EE.EEE--.--HHHHHHHHHHHT...--EEEEE------EE-S-HHHHHHHHHHHHHH--ECCCCCH............H-S--CE--HH.HH...........CCSS-SEEEE-.SSTTSBSTTHHHHHH....HTT-SEEE-SSSS-BSHHHHH.HHHHTT-EEE-HHHHT----HHHHHHHHHHHCTS---HHHHHH CS
   PF00208.16   2 Gs.ldrseaTglGvvyyveemlkklgld.slegkrv.aiqGs.Gnvgsyaaelltel...gakvvavsDssGviydpngldleellelkeekksrvkeykks...........sadkaeyieneeel...........weikvDilvPc.Atqneineenakeli....kngvklvvEgANmpltqeake.ileeagilvapdkaaNaGGVtvSalEmlqnsqrlswteeevde 200
                  G+ + + ++T+ Gv++y+  +l+  g+d s +  ++ +++G+ G+v+ ++++ l++    gak+v++ D+sG+  d++gld eell+l ++ +  + +++ +                                    ++i +D++vP+ +++n ine+n ++ +    +   +lvvEgAN+++t++a   ++++ag+ v++d +aN+ GV++S++E+l+      +++e++d+
  MMETSP0890-20130614|18407_1 704 GInHKEFGVTSEGVIVYLDTALRASGKDpSTASFTIkITGGPdGDVAGNLIKMLHRDygqGAKIVGIADGSGCAEDSDGLDHEELLRLVDASEP-ILSFNADklsarghlydaG------------TdegaarrdsmhNRIIADVFVPAgGRPNTINEHNFRAFLqpdgRPSSPLVVEGANLFITPNARTaLYRDAGVRVVKDSSANKAGVICSSFEILAA---HLIDAEDFDD 921
                  5658999*****************777785555555156788************985555****************************877777.6666644443444443220............1223445555557789********************99966554489***************9978899************************98...4457777765 PP

>> PF05088.7  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.8   0.4    0.0038        26     423     561 ..      56     192 ..      42     205 .. 0.65
   2 !   23.5   0.0   1.1e-09   7.6e-06     708     793 ..     534     631 ..     472     662 .. 0.77
   3 !    9.8   0.0   1.5e-05       0.1     866     916 ..     702     752 ..     685     759 .. 0.90
   4 !   12.3   0.0   2.6e-06     0.018    1056    1097 ..     866     908 ..     863     919 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0038
    PF05088.7 423 eealaeklgeekaaallkryaeafpesYreefspeeavaDiekleklse..eeelavklyreeeeeeeelrlklyraeeplsLsdvlpvlenlGlrvieerpyeveredgeevwihdfelelaeeeeldlee.vkerfeeal 561
                  +++ +e ++ ++a++l+  + +++p+sY ++++pe+ +++++++++l++  +e+ ++++ ++ +eee+++++     ++p +L +    +++l  +  + + ++v +++++++++++f+++   +++ ++++ + ++f++ l
  MMETSP0890-20130614|18407_1  56 KHQYTE-MQLKTAETLIPWFLNEMPASYFRSVAPEDRLQHLRAISALRSleSEADELRVLTAVKEEERTITFARI-GHAPGTLLR---QVKQLSAEAGRLSEVQVFTSRDDALCLNSFKFQFGYNNKNTQQNiQGTKFTQHL 192
                  333333.355788899999**********************9999996522555566666777777777777665.445544444...445555555555555565555678888888888766655444440344555555 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.1e-09
    PF05088.7 708 pkPrPlfEifVysprveGvHLRgGkVARGGLRw.SDRreD......fR..tEvLgLvkAQqvKNavIVPvGaKGGFvvkqlpeea...dreallaegi 793
                   + +P+  i+V+++r+ G H+R+ ++ARGG+R    R  D       R   E   L  AQq KN      G+KG  +v  l++ +   d ++  +eg+
  MMETSP0890-20130614|18407_1 534 YHHMPYGIIYVHARRLGGFHVRFKRIARGGMRIvTPRSADtmqmesGRhfDECYNLAFAQQLKNKDLAEGGSKGVLIVNALTDGGqgdDGDENEKEGE 631
                  55678999************************7345777733333323336****************************9998764554455555554 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 1.5e-05
    PF05088.7 866 svGYDHKkmGITArGAWesvkrhFrelgidiqtedftvvGiGDmsGDVFGN 916
                   +G +HK+ G+T+ G  +      r  g+d  t +ft+   G   GDV GN
  MMETSP0890-20130614|18407_1 702 ETGINHKEFGVTSEGVIVYLDTALRASGKDPSTASFTIKITGGPDGDVAGN 752
                  5799**********************************************9 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 2.6e-06
    PF05088.7 1056 vgEGgNLGvTqlgRie.falkggrintDaiDNsaGVdcSDhEV 1097
                   v EG+NL +T ++R   +  +g+r+  D   N aGV cS  E+
  MMETSP0890-20130614|18407_1  866 VVEGANLFITPNARTAlYRDAGVRVVKDSSANKAGVICSSFEI 908 
                   89************985788999****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.36u 0.58s 00:00:01.94 Elapsed: 00:00:01.17
# Mc/sec: 2285.76
//
Query:       MMETSP0890-20130614|18431_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-13   49.5   7.7    3.7e-13   48.8   5.4    1.4  1  PF13639.1  Ring finger domain
    2.9e-09   36.4   5.8    4.7e-09   35.7   4.0    1.3  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    3.4e-07   30.2  11.8    3.5e-06   26.9   8.2    2.5  1  PF12678.2  RING-H2 zinc finger
    9.9e-07   28.2   7.9    2.3e-06   27.0   5.5    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    3.2e-06   26.6   8.2    5.6e-06   25.8   5.7    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    1.5e-05   24.3   2.7    3.8e-05   23.0   1.9    1.7  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0011   18.0   1.6     0.0018   17.4   1.1    1.3  1  PF04641.7  Replication termination factor 2
  ------ inclusion threshold ------
      0.019   14.6   6.0      0.075   12.7   4.2    2.0  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
        0.3   11.0   8.1       0.73    9.8   5.6    1.7  1  PF12906.2  RING-variant domain
       0.31    9.8   3.0       0.55    9.0   2.1    1.3  1  PF06511.6  Invasion plasmid antigen IpaD
       0.62    9.9   5.3        1.9    8.4   3.7    1.9  1  PF11793.3  FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   5.4     3e-16   3.7e-13       2      45 ..      19      59 ..      18      60 .. 0.95

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 3e-16
    PF13639.1  2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssnsCPlCrk 45
                 +C iC + +   +++ +lpCgH+fH  Cl+ w+++++sCP+Cr+
  MMETSP0890-20130614|18431_1 19 VCIICREHM---DSAKKLPCGHIFHLACLRLWFQQQQSCPTCRA 59
                 7********...799****************************7 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   4.0   3.8e-12   4.7e-09       4      45 ..      19      58 ..      17      59 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 3.8e-12
    PF13923.1  4 sCpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiCr 45
                 +C iC e++ ++   +pCgH ++  C+  w+++ +++CP+Cr
  MMETSP0890-20130614|18431_1 19 VCIICREHMDSAK-KLPCGHIFHLACLRLWFQQ-QQSCPTCR 58
                 8**********95.5******************.*******9 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   8.2   2.8e-09   3.5e-06      20      75 .]      18      58 ..       4      58 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.8e-09
    PF12678.2 20 dnCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75
                  +C+iCr+++             d+ +     CgH FHl C++ W +++++CP+cr
  MMETSP0890-20130614|18431_1 18 RVCIICREHM-------------DSAKK--LPCGHIFHLACLRLWFQQQQSCPTCR 58
                 4699*****9.............22222..35***********************8 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   5.5   1.9e-09   2.3e-06       1      41 []      20      57 ..      20      57 .. 0.98

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.9e-09
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20  1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41
                 C+iC e +  ++  l+C+H f+ +C+r + +  ++++CP+C
  MMETSP0890-20130614|18431_1 20 CIICREHMDSAK-KLPCGHIFHLACLRLWFQ--QQQSCPTC 57
                 ************.******************..9999**** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   5.7   4.5e-09   5.6e-06       4      47 ..      19      61 ..      16      63 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.5e-09
    PF13920.1  4 tCvvClereadvlllpCgHlclCeeCaerllkrkkkCpiCrspi 47
                  C++C+e+  ++  lpCgH+ +  +C + + +++++Cp+Cr+++
  MMETSP0890-20130614|18431_1 19 VCIICREHMDSAKKLPCGHI-FHLACLRLWFQQQQSCPTCRADV 61
                 6*******************.********************987 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.9   3.1e-08   3.8e-05      12      57 ..      19      55 ..      18      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.1e-08
                 B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
    PF13445.1 12 aCpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57
                 +C i++e + +     ++LpCGh++   +l  ++++      +  CP
  MMETSP0890-20130614|18431_1 19 VCIICREhMDS----AKKLPCGHIFHLACLRLWFQQ------QQSCP 55
                 7********99....*******************93......34555 PP

>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.1   1.5e-06    0.0018     115     233 ..      19     135 ..       2     164 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
    PF04641.7 115 iCpvtglelngktkfvalrkcGcVfsekalkevk.eekvCpvCnkefkeedv.vp..lnptkeelell.karleeekakkkkkkkkkkkkkaeakgekaeaeaksksskeesskagkkkekkkl 233
                  +C + + ++++  k     +cG++f    l+    +++ Cp+C ++  +e v +p  +n + +e ++  +a+  +e+ + +++ ++++++ + + +++++ +++s++++++   + ++   +++
  MMETSP0890-20130614|18431_1  19 VCIICREHMDSAKK----LPCGHIFHLACLRLWFqQQQSCPTCRADVPTEPVnIPteINARVQENNATpQANPPQENTHPEQQNQQQTNEPTVEIAHSNAPHNNSQQQQQQ---HLERAVPTET 135
                  67777777766666....59***********98558999********9998764433777766444440333333333333333333333333444443333333333222...2222222222 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.2     6e-05     0.075      51      80 ..      34      60 ..      12      64 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6e-05
    PF12861.2 51 kckhnfhlhcilkwletetskglcpmcrqt 80
                  c h+fhl c+  w+++++s   cp cr  
  MMETSP0890-20130614|18431_1 34 PCGHIFHLACLRLWFQQQQS---CPTCRAD 60
                 4**************99765...9999965 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.6   0.00058      0.73       1      47 []      20      57 ..      20      57 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00058
                 ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2  1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47
                 C iC+e++++ +  + pC   G  +++H +Cl+ W++  ++++C  C
  MMETSP0890-20130614|18431_1 20 CIICREHMDSAK--KLPC---G--HIFHLACLRLWFQ--QQQSCPTC 57
                 99*****99999..7788...5..8***********9..67779998 PP

>> PF06511.6  Invasion plasmid antigen IpaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.1   0.00044      0.55      52     140 ..      75     161 ..      50     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00044
                  ---------------TTTTHHHHHHHHHHHH---------------HHHHHHHH---..S--HHHHT---HHHH------HHHHHHHHHHH CS
    PF06511.6  52 kkeeaqktlretplaeleeasdertlsarklesslnalaksgvalsaeqkealrstl..saPkeaelagapmaaarqtisdaelWdkisds 140
                  + +e + t +  p++e + + +++  ++++ ++    +a+s+ + ++ q+++ +  l    P+e++ a+ap+ ++++  ++a +W  i+ +
  MMETSP0890-20130614|18431_1  75 RVQENNATPQANPPQE-NTHPEQQ--NQQQTNEPTVEIAHSNAPHNNSQQQQQQ-HLerAVPTETRDAAAPLRRPNENQANAAVWRVIATD 161
                  4455566666666666.4444444..4556666667789999998877766655.333488**************************9976 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.7    0.0015       1.9      25      46 ..      32      53 ..      14      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0015
                 -TT----B-SGGGHHHHHHHH- CS
    PF11793.3 25 nekCnkkfHaaCLkeWlrslke 46
                    C+++fH aCL  W++++++
  MMETSP0890-20130614|18431_1 32 KLPCGHIFHLACLRLWFQQQQS 53
                 456***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1254  (0.0917203); expected 273.4 (0.02)
Passed bias filter:                      593  (0.0433733); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.80u 0.43s 00:00:01.23 Elapsed: 00:00:00.90
# Mc/sec: 852.04
//
Query:       MMETSP0890-20130614|18445_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-09   36.6   0.4    4.1e-09   35.7   0.3    1.4  1  PF02891.15 MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> PF02891.15  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.3     3e-13   4.1e-09       7      49 ..      30      73 ..      28      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 3e-13
   PF02891.15  7 lslsrisiPvrgekCkHiqCfdlksflesnertkt.WnCPvCsk 49
                 +++ r+++Pvrg+ C H  Cfdlks+l +n ++    +CP Cs+
  MMETSP0890-20130614|18445_1 30 YTMCRLETPVRGSGCIHDACFDLKSYLAHNGTRGFqAKCPYCSR 73
                 6788**************************9777559*****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.80
# Mc/sec: 1141.27
//
Query:       MMETSP0890-20130614|18436_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-51  175.5   4.6      4e-51  173.8   3.2    1.8  1  PF00112.18 Papain family cysteine protease
    2.3e-05   24.4   2.3    4.3e-05   23.5   1.6    1.5  1  PF08246.7  Cathepsin propeptide inhibitor domain (I29)
     0.0079   14.6   6.4       0.39    9.0   0.3    2.8  3  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   3.2   8.8e-55     4e-51       4     218 ..     181     421 ..     178     423 .. 0.84

  Alignments for each domain:
  == domain 1    score: 173.8 bits;  conditional E-value: 8.8e-55
                  B--CCCTT.GGG---B------HHHHHHHHHHHHHHHHHHS.S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-............S--CC.CC--C.......CCCECEEEEEESS................-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-T...TG--EEEEE---BSCTTC-EEEEE-SB-TT------EEEESSSSSGGGTTSSEEE CS
   PF00112.18   4 svDwrekkgavtpvkdqgqCGsCWafsavgalegrlaiktkkklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeg...........gkCkkk.kkkek......evakikgygkvken................seealkkalakngPvsvaidaseedfqlYksGvyketecss...telnhavlivGygvengkkyWivkNSWgtdwGekGYiriargknnecgieseavy 218
                   vDwr   ga++pvk+qgqCGsCW+fsa +++e++l+ +t++ +v+lS q+l +C + +  gC GG  ++a+ey++++ g++ e+  pY +  +            +C+k  ++ ++      ++a +++                       + e+l+ al++  Pvsv+++a ++    Y +Gv++ ++c +   ++++h v +vGy+++++  yWiv+NSW+tdwG++GYi+++ ++n +cgi++ea++
  MMETSP0890-20130614|18436_1 181 VVDWRAVPGALSPVKNQGQCGSCWSFSASEQIESQLMFATGDPMVELSPQQLASCVT-TCYGCGGGDTTDAYEYLMHHIGLAPEAYWPYVQGMTpddscldqtctAQCDKPlTSLKQdftfigHYAVVDD------YafatqpcnelnscnhqDLESLALALNE-MPVSVCLNAANW--DDYIGGVMSADACGGnglQDMDHCVSAVGYNSSETGGYWIVRNSWSTDWGDDGYIYLEFNSN-TCGIANEATV 421
                  58****778********************************9**************8.899************************99***7666677889977774555543332222333333344444......2333334667777755577778888887.9*********96..9************9988999****************************************88.******9986 PP

>> PF08246.7  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.6   9.4e-09   4.3e-05       1      40 [.      79     117 ..      79     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 9.4e-09
    PF08246.7   1 FeswmdaygkkYrhsseinerfenFkeNlrqiqehNankn 40 
                  +e ++++++k+Y++++e+ +r enF + +rq   +N+ +n
  MMETSP0890-20130614|18436_1  79 WELYKQKFQKNYASEDEEVQRRENFHQRMRQLYALNK-QN 117
                  899*********************************4.33 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.04   1.8e+02     162     192 ..     149     179 ..     106     187 .. 0.87
   2 !    9.0   0.3   8.5e-05      0.39      56      85 ..     190     221 ..     148     232 .. 0.74
   3 !    7.2   0.4   0.00031       1.4     359     396 ..     370     405 ..     363     410 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.04
   PF03051.10 162 nseasrelnelLnkklrkdaleLRklveegk 192
                  n ++  +l+e  +++l++da++LRk+++ ++
  MMETSP0890-20130614|18436_1 149 NQKDQIDLDEWRTHRLHEDAHTLRKMAHVSE 179
                  4556667889999***********9998765 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 8.5e-05
   PF03051.10  56 d..evtnqkqsGRCWlFaalnvlRlkllkklk 85 
                     +v nq q G CW F+a  ++  +l+    
  MMETSP0890-20130614|18436_1 190 AlsPVKNQGQCGSCWSFSASEQIESQLMFATG 221
                  34499***************999998886655 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00031
   PF03051.10 359 mtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                  m+H +  +g +   +++   w v nsW  d G++Gy  
  MMETSP0890-20130614|18436_1 370 MDHCVSAVGYNS--SETGGYWIVRNSWSTDWGDDGYIY 405
                  666665555555..666678****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.92
# Mc/sec: 1140.87
//
Query:       MMETSP0890-20130614|18465_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-12   45.3   2.8    6.9e-12   45.3   1.9    1.8  2  PF00892.15 EamA-like transporter family
      5e-06   26.5   7.5    6.5e-06   26.2   0.8    2.7  3  PF13536.1  Multidrug resistance efflux transporter
  ------ inclusion threshold ------
      0.059   12.4   0.0        0.1   11.6   0.0    1.4  1  PF04142.10 Nucleotide-sugar transporter


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.1   5.1e+03      53      63 ..       8      18 ..       3      23 .. 0.55
   2 !   45.3   1.9   1.5e-15   6.9e-12       3     125 ..      68     188 ..      66     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.1
   PF00892.15 53 ilallllgllg 63
                 + +llll+++g
  MMETSP0890-20130614|18465_1  8 FMCLLLLCIVG 18
                 45555555554 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 1.5e-15
   PF00892.15   3 waiyfvlskkllesvspltitayrlliagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  +++ + + k   + ++p   + +r+ +ag+ +   +++  ++ +l ++ ++++ +l +   ++ gyl+++++l+ ++as+ ++i sl++v++ ll + +lg+k   +++++++++ +Gv+ll 
  MMETSP0890-20130614|18465_1  68 YGSNYAVIKSIDSVIPPSLSAVLRFGVAGM-ASYPIIYVYSK-SLQNKPKVWSGALQAGGVNAAGYLCQAIGLEGVDASISAFICSLAVVVVPLLDYSILGQKTPRSTWISVGIAAIGVALLA 188
                  78888899999999***************5.44444444444.5777777888888888889**********************************************************985 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011        50       3      24 ..       4      25 ..       2      81 .. 0.79
   2 !   26.2   0.8   1.4e-09   6.5e-06      27     108 ..     108     191 ..      85     195 .. 0.77
   3 ?   -3.2   0.2       1.9   8.5e+03      48      60 ..     244     256 ..     242     266 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.011
    PF13536.1  3 lrylfmllflllivllrkrlke 24
                 l+ +fm l+ll+iv l + l +
  MMETSP0890-20130614|18465_1  4 LNLNFMCLLLLCIVGLTHALQS 25
                 7789***********9999874 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.4e-09
    PF13536.1  27 relkrnpllwlllagllgfglf..yalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqvee 108
                  + l+++p  w ++    g+  +  y+ ++++++ + + + a i +l++++++ll   ++++k p  +++ +++++iGv+l+++  
  MMETSP0890-20130614|18465_1 108 KSLQNKPKVWSGALQAGGV-NAagYLCQAIGLEGVDAsISAFICSLAVVVVPLLDYSILGQKTPRSTWISVGIAAIGVALLALDG 191
                  4566777777444333332.2224777778888888747778899***********************************98865 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.9
    PF13536.1  48 fyalltlAakhap 60 
                  + al ++A +++ 
  MMETSP0890-20130614|18465_1 244 TVALCCAAIQLLC 256
                  3444444444443 PP

>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05       0.1      36      97 ..     136     197 ..     126     235 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.2e-05
   PF04142.10  36 valsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkeseae 97 
                  ++l+ +da++      l ++   l+ + +L++k  +  W+s+ +  +gv+l+ l+ + s+ +
  MMETSP0890-20130614|18465_1 136 IGLEGVDASISAFICSLAVVVVPLLDYSILGQKTPRSTWISVGIAAIGVALLALDGTPSNVN 197
                  67888999999999**************************************9998777433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 961.87
//
Query:       MMETSP0890-20130614|18464_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-24   82.9   0.1    2.1e-23   81.5   0.1    1.8  1  PF04542.9  Sigma-70 region 2
    3.6e-19   67.7   1.8    1.2e-17   62.8   0.9    3.2  3  PF04545.11 Sigma-70, region 4
      5e-11   42.2   3.2    1.4e-06   27.9   0.0    4.1  4  PF04539.11 Sigma-70 region 3
    4.7e-07   29.2   0.6    1.3e-06   27.7   0.4    1.8  1  PF00140.15 Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
        4.5    5.4   8.0        1.8    6.7   3.8    1.4  2  PF09531.5  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.1   7.7e-27   2.1e-23       1      71 []     287     357 ..     287     357 .. 0.98

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 7.7e-27
                  HHHHHHHHHHHHHHHHS-TTS-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS--- CS
    PF04542.9   1 lverylplvrrlarrllgsgadaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrrrrr 71 
                  +v+++l+lv+++a+r+ ++g++ +D++Qe+ ++l rave+fdperg+kfs++++++ir+a+ +a+ +++r+
  MMETSP0890-20130614|18464_1 287 MVSSNLRLVVSIAKRYQNRGLSLQDVIQEGIFGLSRAVEKFDPERGFKFSTYATWWIRQAVMRAIADQSRT 357
                  6899****************************************************************986 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   3.9e+03      14      26 ..     299     312 ..     298     312 .. 0.80
   2 ?    1.0   0.0     0.084   2.3e+02      17      33 ..     382     398 ..     378     400 .. 0.86
   3 !   62.8   0.9   4.2e-21   1.2e-17       4      50 .]     471     521 ..     470     521 .. 0.98

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.4
                  HHHH.TST--CCCH CS
   PF04545.11  14 elrf.geglTleEi 26 
                    r+  +gl+l+++
  MMETSP0890-20130614|18464_1 299 AKRYqNRGLSLQDV 312
                  67888999999976 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.084
                  HTST--CCCHHHHHTS- CS
   PF04545.11  17 fgeglTleEiGerlgis 33 
                  +g++ T  Ei+ +l+is
  MMETSP0890-20130614|18464_1 382 YGREPTRNEIATKLDIS 398
                  67777999********9 PP

  == domain 3    score: 62.8 bits;  conditional E-value: 4.2e-21
                  TS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
   PF04545.11   4 sLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                   L++re  v++lrf    g+++TleEiG+ + i+rerVrqie+rAl+kLR+
  MMETSP0890-20130614|18464_1 471 ALSDREIHVVQLRFgltdGRPRTLEEIGKCYSITRERVRQIEARALHKLRQ 521
                  79************************************************6 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.87   2.4e+03      19      61 ..      62     104 ..      48     114 .. 0.78
   2 !    8.2   0.1   0.00072         2      10      35 ..     241     266 ..     236     269 .. 0.90
   3 !   27.9   0.0   5.3e-10   1.4e-06       3      52 ..     368     415 ..     366     432 .. 0.81
   4 ?    3.5   0.0     0.022        60      18      42 ..     489     513 ..     477     518 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.87
   PF04539.11  19 RePtpeEiAeelgiseekvrevleaarepvsldlpvgeeedge 61 
                  R  t+ E Ae+ +i  e + + le+a e  + + +v++++ ++
  MMETSP0890-20130614|18464_1  62 RRQTIREWAERRNIATENIIRDLERAMEISTPQFEVSKTQTKR 104
                  5557788899999999999998888888888888888876655 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00072
   PF04539.11  10 qreLeqelgRePtpeEiAeelgisee 35 
                  ++ L+++l+ReP++ E A ++gis +
  MMETSP0890-20130614|18464_1 241 REALTNRLEREPSEIEWAIACGISRQ 266
                  789********************975 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 5.3e-10
   PF04539.11   3 lnkikraqreLeqelgRePtpeEiAeelgiseekvrevleaarepvsldl 52 
                  l   k+ qr L+ e gRePt  EiA +l+is++k++ +     + vs  +
  MMETSP0890-20130614|18464_1 368 LQSMKKFQRDLAVEYGREPTRNEIATKLDISVDKLEFLKHCEYQTVS--M 415
                  5567999***************************9876554444444..3 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.022
   PF04539.11  18 gRePtpeEiAeelgiseekvrevle 42 
                  gR  t eEi +   i+ e+vr++  
  MMETSP0890-20130614|18464_1 489 GRPRTLEEIGKCYSITRERVRQIEA 513
                  677799***************9865 PP

>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.4   4.9e-10   1.3e-06       8      37 .]     210     239 ..     210     239 .. 0.96

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 4.9e-10
                  HHH-------TTHHHHHHHHHHH---HHHH CS
   PF00140.15   8 LrEIgrvpLLTaeEEveLArrieaGdelar 37 
                  L+ + +  LL +eEEv+LAr++++++++++
  MMETSP0890-20130614|18464_1 210 LKNMAKSELLRPEEEVALARKVQRLMHWEE 239
                  899***********************9986 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.32   8.7e+02     416     456 ..      30      77 ..      16     103 .. 0.72
   2 ?    6.7   3.8   0.00067       1.8     347     500 ..      80     259 ..      74     261 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.32
    PF09531.5 416 e......vnksapssalsapsspsaeskakdkkassiitkiqskle.l 456
                         +++sa+s++ s ++s+++++   +++ + i ++ ++++  +
  MMETSP0890-20130614|18464_1  30 AeggwrkQEQSASSRGNSLSQSTATMEDITTERRQTIREWAERRNIaT 77 
                  444555678899999999999999999988899999999988887733 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00067
    PF09531.5 347 likeltsrlveyletvatkgraqskssgkeektssessskel..............................srlaeppkeesasaqspkakrrreklee....vnksapssalsapsspsaeskakd..kkassiitkiqsklelaqvlkklqikkflssivgilfrfskkreaeslvl.adpqlhinai 500
                  +i++l+  ++ +    + +++++++ ++ +e+++   ++ e+                                         ++    + k+++  l +    +++++++++ s++   +ae+ a    +++++++++++++++  + l + + +++l++ v+ l + +++rea +  l ++p+ + +ai
  MMETSP0890-20130614|18464_1  80 IIRDLERAMEISTPQFEVSKTQTKREKMLVEPDHRPFPGDEEtlfdetktatlfdevavinekpgvvkeeknV---------LGTGAVDQDKNKKGDLNKarklKQQERKEKKASKSKRAQAEAFAVIsgSQNQALLLQLKNMAK--SELLRPEEEVALARKVQRLMHWEEEREALTNRLeREPSEIEWAI 259
                  5666666666666666666666666666666666666555557777777777777777777664444433331.........333333333333333333455555666666666666666666666667**************9..788899********************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1241  (0.0907695); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.81
# Mc/sec: 1594.61
//
Query:       MMETSP0890-20130614|18480_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   44.1   0.0    2.3e-11   43.5   0.0    1.4  1  PF13911.1 AhpC/TSA antioxidant enzyme


Domain annotation for each model (and alignments):
>> PF13911.1  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.7e-15   2.3e-11       1     115 []      69     272 ..      69     272 .. 0.95

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.7e-15
    PF13911.1   1 aLsadkpeleaagiklvaigigdpas.aekFcdl..tgfpfelyvDpdaklyralgly......................................................................................kglklglapgslqkvleellkrakeigipgnkdagyltqrGGtflfdadg.evlyehrdrg 115
                  +Ls+++++l ++g++  ai++  + + + k ++l     +++l+ Dpd+++ ra+g+                                                                                        +++l+la+++lq++l  ++k ++++    +   + ltq+GG+ lfd++  +v ye+rd+g
  MMETSP0890-20130614|18480_1  69 RLSYYSDKLSELGVERQAIIVNAEPDaCVKLAELleLSSSVDLLSDPDGAAGRAFGVSrgwmpdddkleifsisiplspygklfgmlwglgawatlpaviggylgnpfsaqpwiesafkqnnkagrwpetnsdqfkqiplvgewGRRPLELATLRLQNMLGVSIKYWNDLRPSDDH-LDLLTQLGGCCLFDSKAkSVIYEWRDPG 272
                  6999***********999998888788*****9955555888******************************************************************************************************679***********************777777.9*************9889********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.82
# Mc/sec: 827.04
//
Query:       MMETSP0890-20130614|18486_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-12   45.3   0.0    8.4e-12   44.8   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   6.2e-16   8.4e-12       3      94 .]      77     209 ..      75     209 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 6.2e-16
                  B---CT-EEEEEEEEEE.-..--EEEETTT.......TTCEE.EEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT..S.TT................................-EEEEEEEEE CS
   PF00254.23   3 kkakegdtVtvhyegkled..gtvfdssys.......rakpf.efkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk..ippn................................atlvfevell 94 
                  + +++gd+V ++ eg++ +  g+ f+++ s        ++++  f vG gqvi++leeg++gmk+G+ r++   p+l+Y  kg +        +                                +tl+ +++l+
  MMETSP0890-20130614|18486_1  77 V-VETGDRVVYEWEGYTIGyfGRPFEKKNSvrggdfsADRDYdRFVVGRGQVIPALEEGVIGMKEGGVRQIVFGPKLGYPFKGDEINGilD--DpnhdrigpkpgsfsglralnfvlsskgdnavdKTLLINIKLI 209
                  4.789****99999999645688888883343344444444437************************************98874433442..2335666666888888888888888888888889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 785.27
//
Query:       MMETSP0890-20130614|18518_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 269.06
//
Query:       MMETSP0890-20130614|18519_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-35  121.8   0.0    3.3e-35  121.5   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0   2.4e-39   3.3e-35       3     155 ..      58     215 ..      56     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 121.5 bits;  conditional E-value: 2.4e-39
                  XXXXXXXXXXXX.XXXXXX.---...-TTTTT--------TTT------------------S--TT--...STT-------S-TT.THHHH---HHHHHHHHTT------....------------------.-----------STTT----TTTTT------- CS
   PF00504.16   3 aeldgslpgdlg.fDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa..waeagglslptllalqillligflelareqelkapeseg....sekraypGglgfdplgla.kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  +el+g +++++g fDplgl++d    ++ ++reaE++HGRvAMla+ G+ ++e +  l    +++++p+   +++      ++++  ++l+ig++e++++  + +p ++g     +  ++ G++ +dpl ++ +++ e +e+++kEi+nGRlAMia++g+vvq+
  MMETSP0890-20130614|18519_1  58 KELPG-VSAPFGfFDPLGLTNDMseaRILYFREAEIKHGRVAMLAAFGFPIAEQFHPLF--GGQIDVPSyiAYQQT---PLQTFWPLVVLYIGVIEIFSVFTFISPFENGeywqLKPTHKSGDFDWDPLDFKpTNPTEYKEMATKEINNGRLAMIAIAGMVVQE 215
                  57889.9*************888999***************************775544..456788986422222...55667889***************9999888899985556789******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 822.13
//
Query:       MMETSP0890-20130614|18524_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-17   61.5  58.9    3.7e-06   26.9   0.6   10.2 10  PF13428.1  Tetratricopeptide repeat
    5.6e-16   57.8  21.3    0.00028   20.3   0.1    5.8  5  PF13414.1  TPR repeat
    1.5e-14   54.0  62.3    4.2e-07   30.3   2.0    8.7 11  PF13432.1  Tetratricopeptide repeat
    5.3e-12   44.5  17.2     0.0025   17.4   0.1    8.0  8  PF07719.12 Tetratricopeptide repeat
    1.5e-10   40.2  13.9    0.00023   21.0   0.0    9.3 10  PF13431.1  Tetratricopeptide repeat
    5.8e-06   25.5   0.3       0.27   10.7   0.0    5.8  6  PF00515.23 Tetratricopeptide repeat
    1.5e-05   24.6  28.0    0.00076   19.2   0.3    5.8  5  PF13424.1  Tetratricopeptide repeat
    6.6e-05   22.2   0.5        6.7    6.6   0.0    5.5  6  PF13181.1  Tetratricopeptide repeat
    0.00073   19.7  18.6        3.6    8.1   0.0    7.5  7  PF13174.1  Tetratricopeptide repeat
     0.0015   18.1  17.2        1.8    8.4   0.1    6.9  7  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.057   13.6   0.1        0.2   11.8   0.1    2.0  1  PF13463.1  Winged helix DNA-binding domain
       0.61   10.3   5.5        3.4    7.9   0.1    2.9  2  PF01850.16 PIN domain


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.4   2.6e-05      0.03       3      44 .]      30      72 ..      27      72 .. 0.82
   2 !   26.9   0.6   3.3e-09   3.7e-06       1      43 [.      63     105 ..      63     106 .. 0.97
   3 !   14.5   1.2   3.3e-05     0.038       3      43 ..      99     139 ..      99     140 .. 0.92
   4 !   10.8   2.1   0.00051      0.58       2      43 ..     132     175 ..     131     176 .. 0.89
   5 ?    3.4   0.1      0.12   1.4e+02      19      42 ..     193     216 ..     190     218 .. 0.92
   6 ?    0.6   0.1      0.97   1.1e+03      10      31 ..     219     240 ..     210     246 .. 0.67
   7 !    9.3   2.6    0.0016       1.8       1      38 [.     242     278 ..     242     280 .. 0.87
   8 !   21.0   0.5   2.7e-07    0.0003       2      44 .]     276     318 ..     275     319 .. 0.96
   9 !   12.3   0.1   0.00017      0.19      10      44 .]     315     349 ..     313     349 .. 0.89
  10 ?    2.5   1.1      0.24   2.8e+02      18      44 .]     459     483 ..     432     483 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.6e-05
    PF13428.1  3 allalarallalGdpdeAiallrralalaP.ddaealllLarl 44
                 al+  a+   ++G+  +Ai ll+ra  l P d+++a+ lLa+l
  MMETSP0890-20130614|18524_1 30 ALRYAAISANRAGRKRDAIGLLERATNLRPaDEPRAWGLLAKL 72
                 44455667889*******************4558*******86 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 3.3e-09
    PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaealllLar 43 
                  p+a+ +la + ++ Gd+ +A+a lrr l+ +P++ae++++La+
  MMETSP0890-20130614|18524_1  63 PRAWGLLAKLREEIGDVSGARATLRRSLQYFPENAELWRRLAE 105
                  79****************************************8 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 3.3e-05
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLar 43 
                  ++++la++  +++++d A+ ++ ra++++ +  +a+ ++ r
  MMETSP0890-20130614|18524_1  99 LWRRLAEIAKRSNRFDTARLHYARAIRADSTFVAAWDAWSR 139
                  599****************************9999988765 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00051
    PF13428.1   2 eallalarallalGdpdeAiallrralalaP..ddaealllLar 43 
                  +a+ a+ r  l +++p +A+ l++r l + P  ++a++++++a 
  MMETSP0890-20130614|18524_1 132 AAWDAWSRMELSQNRPRAAAVLAKRGLDRVPkaESARLWHAYAM 175
                  89*****************************4446899999986 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.12
    PF13428.1  19 eAiallrralalaPddaealllLa 42 
                  +A+a+l++ la  P +a +l++++
  MMETSP0890-20130614|18524_1 193 QAEAALKQGLAVTPRHAHLLHAMG 216
                  79***************9999986 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.97
    PF13428.1  10 allalGdpdeAiallrralala 31 
                  ++  +++ +e +++l +al+++
  MMETSP0890-20130614|18524_1 219 IYTMRQNAQETRRYLTAALERG 240
                  5666667777778888887764 PP

  == domain 7    score: 9.3 bits;  conditional E-value: 0.0016
    PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaeal 38 
                  pea l lar+ ++ G++++A+a++rra  ++  + +a+
  MMETSP0890-20130614|18524_1 242 PEASLSLARLEENEGRVAAARAAYRRA-THDKASVAAW 278
                  577899*********************.7777777777 PP

  == domain 8    score: 21.0 bits;  conditional E-value: 2.7e-07
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  +a++  ar+ l +G+ +eA++l+r+a  ++P d e++ ++ar+
  MMETSP0890-20130614|18524_1 276 AAWRSAARFELLNGNRKEALDLFRKASVRFPRDVELHVQWARA 318
                  89*************************************9985 PP

  == domain 9    score: 12.3 bits;  conditional E-value: 0.00017
    PF13428.1  10 allalGdpdeAiallrralalaPddaealllLarl 44 
                    +al+d   A+++l+ al+++P++ +++++L++l
  MMETSP0890-20130614|18524_1 315 WARALEDNNVAREVLNTALRASPSSTRLYHALGEL 349
                  5677888889**********************986 PP

  == domain 10    score: 2.5 bits;  conditional E-value: 0.24
    PF13428.1  18 deAiallrralalaPddaealllLarl 44 
                   +Ai+++++   + P  a+a++lLa+l
  MMETSP0890-20130614|18524_1 459 VAAIRAYQAS--DLPVPARAWTLLAQL 483
                  3567777765..778889*******97 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.4e-07   0.00028       2      69 .]      27      94 ..      26      94 .. 0.93
   2 !   17.2   0.7   2.2e-06    0.0025       1      57 [.      95     150 ..      95     178 .. 0.82
   3 !   12.3   0.7   7.8e-05     0.089      21      66 ..     193     238 ..     165     242 .. 0.92
   4 ?   -0.3   0.1      0.68   7.8e+02      43      64 ..     248     268 ..     240     273 .. 0.53
   5 !   19.0   0.1   6.2e-07   0.00071       4      69 .]     276     337 ..     271     337 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.4e-07
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleldpnn.aelyynlAlaylklgkdyeeAledyekAleldP 69
                  A+al+ ++  + ++g+  +Ai ++e+A+ l+p + + ++  lA++ ++ g d   A++ ++++l++ P
  MMETSP0890-20130614|18524_1 27 SALALRYAAISANRAGRKRDAIGLLERATNLRPADePRAWGLLAKLREEIG-DVSGARATLRRSLQYFP 94
                 6999*****************************75499*************.5799*********9866 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2.2e-06
    PF13414.1   1 enAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeA 57 
                  enAe +++l++ + + +++d A  +y +A++ d+    ++ + +   l ++ ++++A
  MMETSP0890-20130614|18524_1  95 ENAELWRRLAEIAKRSNRFDTARLHYARAIRADSTFVAAWDAWSRMELSQN-RPRAA 150
                  69*******************************998887766655555543.44444 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 7.8e-05
    PF13414.1  21 eAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                  +A++a++++l+  p +a l+ +++l  + + ++ +e +++++ Ale
  MMETSP0890-20130614|18524_1 193 QAEAALKQGLAVTPRHAHLLHAMGLQIYTMRQNAQETRRYLTAALE 238
                  89************************999999*************8 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.68
    PF13414.1  43 lAlaylklgkdyeeAledyekA 64 
                  lA + ++ g +  +A+++y++A
  MMETSP0890-20130614|18524_1 248 LARLEENEG-RVAAARAAYRRA 268
                  444444444.345555555555 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 6.2e-07
    PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                   a++ ++   + +g+ +eA+++++kA    p + el+ + A a++ ++     A+e ++ Al+ +P
  MMETSP0890-20130614|18524_1 276 AAWRSAARFELLNGNRKEALDLFRKASVRFPRDVELHVQWARALEDNN-V---AREVLNTALRASP 337
                  589*******************************************53.5...6777888888776 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.0     0.013        15      29      64 ..      26      61 ..      18      65 .. 0.87
   2 !   30.3   2.0   3.7e-10   4.2e-07       3      61 ..      69     127 ..      68     129 .. 0.94
   3 !    7.0   0.4    0.0075       8.6       8      42 ..     142     176 ..     139     190 .. 0.82
   4 !    9.5   1.2    0.0013       1.4      15      61 ..     193     240 ..     191     245 .. 0.88
   5 !   12.9   4.6   0.00011      0.12      17      58 ..     230     269 ..     230     277 .. 0.87
   6 !   20.3   4.5   5.2e-07   0.00059       1      63 [.     246     307 ..     246     309 .. 0.94
   7 !   14.8   0.2   2.6e-05      0.03       3      43 ..     281     321 ..     279     324 .. 0.93
   8 !    8.2   0.3    0.0032       3.6      10      42 ..     319     351 ..     316     354 .. 0.88
   9 ?   -2.4   0.1       6.7   7.7e+03      16      37 ..     370     395 ..     363     427 .. 0.58
  10 ?    0.6   1.4      0.76   8.6e+02      18      60 ..     418     464 ..     417     469 .. 0.69
  11 ?    4.4   1.8     0.049        55       2      40 ..     439     483 ..     438     489 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.013
    PF13432.1 29 eaaeallllaeallrlgrldeAaallraalalaPdd 64
                 + a al + a ++ r+gr  +A+ ll++a  l+P d
  MMETSP0890-20130614|18524_1 26 DSALALRYAAISANRAGRKRDAIGLLERATNLRPAD 61
                 57889999999999*************999888877 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 3.7e-10
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalala 61 
                  lA+++ + Gd+  A+a l++ l ++Pe+ae + +lae++ r +r+d A+  +++a++++
  MMETSP0890-20130614|18524_1  69 LAKLREEIGDVSGARATLRRSLQYFPENAELWRRLAEIAKRSNRFDTARLHYARAIRAD 127
                  899999*******************************************8888888877 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0075
    PF13432.1   8 lraGdydeAlaaleaalalaPeaaeallllaeall 42 
                  l ++++++A+ + ++ l++ P+a  a+l+ a a +
  MMETSP0890-20130614|18524_1 142 LSQNRPRAAAVLAKRGLDRVPKAESARLWHAYAMA 176
                  5677777777777********99999999988765 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.0013
    PF13432.1  15 eAlaaleaalalaPeaaeallllaeallrlgrldeAa.allraalala 61 
                  +A+aal++ la  P++a  l + +   + + + +++  ++l aal+++
  MMETSP0890-20130614|18524_1 193 QAEAALKQGLAVTPRHAHLLHAMGLQIYTMRQNAQETrRYLTAALERG 240
                  7***************************8888888887***9999654 PP

  == domain 5    score: 12.9 bits;  conditional E-value: 0.00011
    PF13432.1  17 laaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                  +++l aal++    +ea+l la++    gr+++A+a++r+a 
  MMETSP0890-20130614|18524_1 230 RRYLTAALERG--QPEASLSLARLEENEGRVAAARAAYRRAT 269
                  57888999999..666***********************984 PP

  == domain 6    score: 20.3 bits;  conditional E-value: 5.2e-07
    PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  l+lAr++ + G++++A+aa+++a  +    + a+   a++ l  g+ +eA+ l+r+a  + P 
  MMETSP0890-20130614|18524_1 246 LSLARLEENEGRVAAARAAYRRATHDKA-SVAAWRSAARFELLNGNRKEALDLFRKASVRFPR 307
                  689************************7.9**************************9877776 PP

  == domain 7    score: 14.8 bits;  conditional E-value: 2.6e-05
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallr 43 
                   Ar++l +G+ +eAl+++++a  ++P+++e +  +a+al +
  MMETSP0890-20130614|18524_1 281 AARFELLNGNRKEALDLFRKASVRFPRDVELHVQWARALED 321
                  7999*********************************9976 PP

  == domain 8    score: 8.2 bits;  conditional E-value: 0.0032
    PF13432.1  10 aGdydeAlaaleaalalaPeaaeallllaeall 42 
                  + d   A+++l++al++ P   + + +l+e+ +
  MMETSP0890-20130614|18524_1 319 LEDNNVAREVLNTALRASPSSTRLYHALGELEA 351
                  567788***********************9987 PP

  == domain 9    score: -2.4 bits;  conditional E-value: 6.7
    PF13432.1  16 Alaal.eaalala...Peaaeallll 37 
                  A++++ + a +++   P+ +  l+++
  MMETSP0890-20130614|18524_1 370 ARRYFyKGAFRAPkrgPHLVALLFAW 395
                  66666666666665444433333332 PP

  == domain 10    score: 0.6 bits;  conditional E-value: 0.76
    PF13432.1  18 aaleaalala.Peaaeallllaeallrl..grldeAa.allraalal 60 
                  +++ +a +l   +    + lla+a+++    +  +Aa ++  aa+++
  MMETSP0890-20130614|18524_1 418 RLFAWAAKLSsRQSSPGYILLARAHFEFygANNSRAAkRFVVAAIRA 464
                  67888888888778888999999999888866666664555555554 PP

  == domain 11    score: 4.4 bits;  conditional E-value: 0.049
    PF13432.1   2 alArallraGdydeAlaal.eaalala.....Peaaeallllaea 40 
                  a+A+++++  +  +A++ +  aa++++     P  a+a+ lla++
  MMETSP0890-20130614|18524_1 439 ARAHFEFYGANNSRAAKRFvVAAIRAYqasdlPVPARAWTLLAQL 483
                  6666666666666666666699999999**9***********986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.019        22       2      33 ..      29      60 ..      28      61 .. 0.86
   2 !   10.1   0.0   0.00051      0.58       1      34 []      63      96 ..      63      96 .. 0.96
   3 !   17.4   0.1   2.2e-06    0.0025       1      32 [.      97     128 ..      97     130 .. 0.94
   4 ?   -3.1   0.0         8   9.1e+03       3      30 ..     133     160 ..     132     163 .. 0.69
   5 ?   -2.2   0.0       4.4     5e+03      19      33 ..     193     207 ..     192     208 .. 0.78
   6 !    6.7   0.2    0.0061       6.9       3      27 ..     244     268 ..     242     270 .. 0.87
   7 !    9.0   0.0    0.0011       1.3       3      32 ..     277     306 ..     275     308 .. 0.83
   8 ?    1.3   0.0      0.32   3.6e+02      12      33 ..     317     338 ..     314     339 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldPn 33
                  al + + ++ ++g+  +A+ ++e+A  l P 
  MMETSP0890-20130614|18524_1 29 LALRYAAISANRAGRKRDAIGLLERATNLRPA 60
                 6777888888899****************997 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                 ++a+ +l+++ ++ gd   A++ ++++l+++P+n
  MMETSP0890-20130614|18524_1 63 PRAWGLLAKLREEIGDVSGARATLRRSLQYFPEN 96
                 579*****************************97 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 2.2e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                  ae++ +l++++ ++++++ A+ ++ +A++ d 
  MMETSP0890-20130614|18524_1  97 AELWRRLAEIAKRSNRFDTARLHYARAIRADS 128
                  799*************************9885 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 8
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  a+ ++ +  + ++++  A+ + ++ l  
  MMETSP0890-20130614|18524_1 133 AWDAWSRMELSQNRPRAAAVLAKRGLDR 160
                  5667777777888888888777777665 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 4.4
                  HHHHHHHHHHHH-TT CS
   PF07719.12  19 eAleafekAleldPn 33 
                  +A++a+++ l+  P+
  MMETSP0890-20130614|18524_1 193 QAEAALKQGLAVTPR 207
                  588888998888886 PP

  == domain 6    score: 6.7 bits;  conditional E-value: 0.0061
                  HHHHHHHHHHHTT-HHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekA 27 
                  a   l+++ ++ g+ + A++a+++A
  MMETSP0890-20130614|18524_1 244 ASLSLARLEENEGRVAAARAAYRRA 268
                  5567999999**************9 PP

  == domain 7    score: 9.0 bits;  conditional E-value: 0.0011
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldP 32 
                  a+   ++  + +g+ +eAl++f+kA   +P
  MMETSP0890-20130614|18524_1 277 AWRSAARFELLNGNRKEALDLFRKASVRFP 306
                  77778888899**************76666 PP

  == domain 8    score: 1.3 bits;  conditional E-value: 0.32
                  HHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  12 yklgdyeeAleafekAleldPn 33 
                  ++l d + A+e ++ Al+  P 
  MMETSP0890-20130614|18524_1 317 RALEDNNVAREVLNTALRASPS 338
                  67888899*********99985 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.4     5e+03      11      33 ..      26      48 ..      20      48 .. 0.72
   2 ?    5.1   0.0     0.024        28       1      33 [.      50      83 ..      50      84 .. 0.91
   3 !   21.0   0.0     2e-07   0.00023       2      33 ..      86     117 ..      85     118 .. 0.96
   4 ?    0.8   0.0      0.59   6.7e+02       1      29 [.     119     147 ..     119     151 .. 0.76
   5 ?   -1.9   0.1       4.2   4.8e+03      11      23 ..     165     177 ..     163     179 .. 0.81
   6 ?    1.3   0.0       0.4   4.5e+02       2      28 ..     198     225 ..     197     231 .. 0.75
   7 ?   -0.3   0.0       1.3   1.5e+03      13      33 ..     242     262 ..     233     263 .. 0.86
   8 ?    0.2   0.1      0.88     1e+03       9      33 ..     271     295 ..     264     296 .. 0.82
   9 ?    4.0   0.0     0.055        63       1      27 [.     297     323 ..     297     323 .. 0.91
  10 ?    5.7   0.0     0.015        17       3      22 ..     330     349 ..     328     354 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 4.4
    PF13431.1 11 nnadaynnLAelllnnGdleeAe 33
                 ++a a+++ A    ++G+ ++A+
  MMETSP0890-20130614|18524_1 26 DSALALRYAAISANRAGRKRDAI 48
                 56666777777777889999886 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.024
    PF13431.1  1 lyekaleldPnn.adaynnLAelllnnGdleeAe 33
                 l+e+a +l P + + a+  LA+l  ++Gd   A+
  MMETSP0890-20130614|18524_1 50 LLERATNLRPADePRAWGLLAKLREEIGDVSGAR 83
                 5799999999999****************99988 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 2e-07
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                  ++++l++ P+na+++++LAe+ ++ +++++A+
  MMETSP0890-20130614|18524_1  86 LRRSLQYFPENAELWRRLAEIAKRSNRFDTAR 117
                  789****************************7 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.59
    PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdl 29 
                  +y +a++ d + + a+ +  +  l+++++
  MMETSP0890-20130614|18524_1 119 HYARAIRADSTFVAAWDAWSRMELSQNRP 147
                  599*********99997776666666665 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 4.2
    PF13431.1  11 nnadaynnLAell 23 
                  ++a +++++A +l
  MMETSP0890-20130614|18524_1 165 ESARLWHAYAMAL 177
                  5788999999887 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.4
    PF13431.1   2 yekaleldPnnadaynnLAe.lllnnGd 28 
                  +++ l+  P +a +++++++ ++  +++
  MMETSP0890-20130614|18524_1 198 LKQGLAVTPRHAHLLHAMGLqIYTMRQN 225
                  67889999***********635655544 PP

  == domain 7    score: -0.3 bits;  conditional E-value: 1.3
    PF13431.1  13 adaynnLAelllnnGdleeAe 33 
                  ++a   LA+l  n G+ + A+
  MMETSP0890-20130614|18524_1 242 PEASLSLARLEENEGRVAAAR 262
                  678889999999999999998 PP

  == domain 8    score: 0.2 bits;  conditional E-value: 0.88
    PF13431.1   9 dPnnadaynnLAelllnnGdleeAe 33 
                  d+ ++ a++  A++ l nG+ +eA+
  MMETSP0890-20130614|18524_1 271 DKASVAAWRSAARFELLNGNRKEAL 295
                  66678899999********999986 PP

  == domain 9    score: 4.0 bits;  conditional E-value: 0.055
    PF13431.1   1 lyekaleldPnnadaynnLAelllnnG 27 
                  l++ka  + P +++++ + A++l +n+
  MMETSP0890-20130614|18524_1 297 LFRKASVRFPRDVELHVQWARALEDNN 323
                  6899999***************99875 PP

  == domain 10    score: 5.7 bits;  conditional E-value: 0.015
    PF13431.1   3 ekaleldPnnadaynnLAel 22 
                  + al+ +P ++ +y++L+el
  MMETSP0890-20130614|18524_1 330 NTALRASPSSTRLYHALGEL 349
                  689***************97 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         8   9.1e+03       8      23 ..      18      33 ..      17      35 .. 0.79
   2 ?   -1.3   0.0       1.5   1.7e+03      12      32 ..      39      59 ..      28      61 .. 0.80
   3 ?    2.1   0.0      0.13   1.4e+02       1      34 []      63      96 ..      63      96 .. 0.94
   4 !   10.7   0.0   0.00024      0.27       1      33 [.      97     129 ..      97     130 .. 0.93
   5 ?    0.8   0.0      0.33   3.8e+02       6      27 ..     247     268 ..     242     269 .. 0.82
   6 ?    3.5   0.0     0.047        53      13      27 ..     287     301 ..     282     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 8
                 HHHHHHTT-HHHHHHH CS
   PF00515.23  8 GnaylklgkydeAley 23
                 ++ + k g+   Al y
  MMETSP0890-20130614|18524_1 18 AASFKKTGDSALALRY 33
                 6788899998888876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.5
                 HHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23 12 lklgkydeAleyyekALelnP 32
                  + g+  +A+   e+A  l+P
  MMETSP0890-20130614|18524_1 39 NRAGRKRDAIGLLERATNLRP 59
                 567899999999999998888 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPnn 34
                 ++a+  l+ +  + g+   A +  ++ L+  P+n
  MMETSP0890-20130614|18524_1 63 PRAWGLLAKLREEIGDVSGARATLRRSLQYFPEN 96
                 589**************************99987 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00024
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                  a+ + +l+ +  + +++d A  +y +A++ + +
  MMETSP0890-20130614|18524_1  97 AELWRRLAEIAKRSNRFDTARLHYARAIRADST 129
                  789*************************98876 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.33
                  HHHHHHHHTT-HHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekA 27 
                   l+ +  + g+   A ++y++A
  MMETSP0890-20130614|18524_1 247 SLARLEENEGRVAAARAAYRRA 268
                  5667777899999********9 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.047
                  HTT-HHHHHHHHHHH CS
   PF00515.23  13 klgkydeAleyyekA 27 
                   +g+ +eAl+ ++kA
  MMETSP0890-20130614|18524_1 287 LNGNRKEALDLFRKA 301
                  57999*********9 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.3     0.003       3.4      43      77 ..      25      59 ..      16      60 .. 0.88
   2 !   19.2   0.3   6.7e-07   0.00076       6      76 ..      64     127 ..      59     129 .. 0.91
   3 ?    4.6   3.8     0.025        28       5      72 ..     209     268 ..     205     270 .. 0.81
   4 !    8.3   2.2    0.0017       1.9      10      72 ..     247     301 ..     243     306 .. 0.84
   5 ?   -0.2   0.1      0.77   8.8e+02      23      53 ..     317     347 ..     310     351 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.003
    PF13424.1 43 pdtaralnnlanlylalgdydeAleylekAleiae 77
                 +d a al+  a+  +++g+  +A+ +le+A ++++
  MMETSP0890-20130614|18524_1 25 GDSALALRYAAISANRAGRKRDAIGLLERATNLRP 59
                 57799*************************99886 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 6.7e-07
    PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +++  la + ++ gd   A++ ++++l+ +       p+ a +++ la++  + +++d A+ ++ +A++++
  MMETSP0890-20130614|18524_1  64 RAWGLLAKLREEIGDVSGARATLRRSLQYF-------PENAELWRRLAEIAKRSNRFDTARLHYARAIRAD 127
                  56778999999******************9.......7779**************************9976 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.025
    PF13424.1   5 atilnnla.lvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  a++l+ ++ +++ + ++ +e + ++  ale  +            a + la+l +  g+ ++A++ +++A
  MMETSP0890-20130614|18524_1 209 AHLLHAMGlQIYTMRQNAQETRRYLTAALERgQ----------PEASLSLARLEENEGRVAAARAAYRRA 268
                  78999**999999****************8733..........345567778888888888888888777 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0017
    PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                   la + + +g+   A++ y++a        +d + +  a++  a+  l  g+ +eAl++++kA
  MMETSP0890-20130614|18524_1 247 SLARLEENEGRVAAARAAYRRA-------THDKASV-AAWRSAARFELLNGNRKEALDLFRKA 301
                  5777778888888888777777.......5788885.5************************9 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.77
    PF13424.1  23 eAlelyekalellrelgddhpdtaralnnla 53 
                  +Ale  + a e+l ++ +++p   r+++ l+
  MMETSP0890-20130614|18524_1 317 RALEDNNVAREVLNTALRASPSSTRLYHALG 347
                  4444444444444444445555555555555 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.069        79       2      32 ..      64      94 ..      63      96 .. 0.91
   2 !    6.6   0.0    0.0059       6.7       1      31 [.      97     127 ..      97     130 .. 0.91
   3 ?    3.6   0.0     0.051        58       6      27 ..     247     268 ..     243     270 .. 0.91
   4 ?    1.4   0.0      0.27   3.1e+02       2      27 ..     276     301 ..     275     302 .. 0.90
   5 ?   -3.4   0.0       9.2     1e+04      20      32 ..     325     337 ..     318     338 .. 0.77
   6 ?   -3.2   0.0         8   9.1e+03       3      11 ..     342     350 ..     341     351 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.069
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelkp 32
                 +a+ +l+++ ++ Gd + A + l++ l++ p
  MMETSP0890-20130614|18524_1 64 RAWGLLAKLREEIGDVSGARATLRRSLQYFP 94
                 7999***********************9966 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0059
                  ---TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelk 31 
                  a+++++l++i +  +++d A  ++ +a+  +
  MMETSP0890-20130614|18524_1  97 AELWRRLAEIAKRSNRFDTARLHYARAIRAD 127
                  579**********************999876 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.051
                  T---HHHHTT-HHHHHHHHH-- CS
    PF13181.1   6 nlGdiYrqlGdydkAkeyleka 27 
                   l++++++ G+  +A +++++a
  MMETSP0890-20130614|18524_1 247 SLARLEENEGRVAAARAAYRRA 268
                  6899****************98 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.27
                  --TTT---HHHHTT-HHHHHHHHH-- CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeyleka 27 
                  +a++  ++ ++ +G+ ++A+  ++ka
  MMETSP0890-20130614|18524_1 276 AAWRSAARFELLNGNRKEALDLFRKA 301
                  578899999999***********998 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 9.2
                  HHHHHH---HHHH CS
    PF13181.1  20 Akeylekalelkp 32 
                  A e l+ al  +p
  MMETSP0890-20130614|18524_1 325 AREVLNTALRASP 337
                  8999999998887 PP

  == domain 6    score: -3.2 bits;  conditional E-value: 8
                  -TTT---HH CS
    PF13181.1   3 ayynlGdiY 11 
                  +y++lG+++
  MMETSP0890-20130614|18524_1 342 LYHALGELE 350
                  455555554 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.024        27       2      31 ..      30      59 ..      18      61 .. 0.88
   2 !    8.1   0.0    0.0032       3.6       6      32 ..      69      95 ..      68      96 .. 0.92
   3 ?    0.8   0.1      0.66   7.5e+02       5      28 ..     102     125 ..      98     128 .. 0.84
   4 ?   -1.0   0.1       2.4   2.8e+03       8      29 ..     218     239 ..     211     242 .. 0.77
   5 !    6.8   0.2     0.008       9.2       1      26 [.     243     268 ..     243     271 .. 0.89
   6 ?    5.1   0.0     0.028        31      11      32 ..     286     307 ..     276     308 .. 0.79
   7 ?   -1.3   0.0       3.1   3.5e+03      15      33 .]     321     339 ..     314     339 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
    PF13174.1  2 AlyklalsyyklgdtdeAlealerlikeyP 31
                 Al ++a s  ++g++++A+ +ler  +  P
  MMETSP0890-20130614|18524_1 30 ALRYAAISANRAGRKRDAIGLLERATNLRP 59
                 6677788888889***********998877 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1  6 lalsyyklgdtdeAlealerlikeyPd 32
                 la+++++ gd + A+++l+r ++ +P+
  MMETSP0890-20130614|18524_1 69 LAKLREEIGDVSGARATLRRSLQYFPE 95
                 899999978*****************7 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.66
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealerlik 28 
                  +la++ ++ +++d A+  + r i+
  MMETSP0890-20130614|18524_1 102 RLAEIAKRSNRFDTARLHYARAIR 125
                  7899999955******99999987 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 2.4
                  HHHHH.HHHHHHHHHHHHHHHHH CS
    PF13174.1   8 lsyyk.lgdtdeAlealerlike 29 
                  ++y + + +++e +++l   +++
  MMETSP0890-20130614|18524_1 218 QIYTMrQ-NAQETRRYLTAALER 239
                  5666635.999999999988875 PP

  == domain 5    score: 6.8 bits;  conditional E-value: 0.008
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   1 dAlyklalsyyklgdtdeAlealerl 26 
                  +A + la++ ++ g+ ++A++a++r 
  MMETSP0890-20130614|18524_1 243 EASLSLARLEENEGRVAAARAAYRRA 268
                  577899******88**********96 PP

  == domain 6    score: 5.1 bits;  conditional E-value: 0.028
                  HHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1  11 yklgdtdeAlealerlikeyPd 32 
                  + +g+  eAl+++++   ++P+
  MMETSP0890-20130614|18524_1 286 LLNGNRKEALDLFRKASVRFPR 307
                  3358****************96 PP

  == domain 7    score: -1.3 bits;  conditional E-value: 3.1
                  HHHHHHHHHHHHHHH-TT- CS
    PF13174.1  15 dtdeAlealerlikeyPdS 33 
                  d   A+e+l+  ++  P S
  MMETSP0890-20130614|18524_1 321 DNNVAREVLNTALRASPSS 339
                  6667999999999999987 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.088     1e+02      11      32 ..      40      59 ..      30      63 .. 0.77
   2 ?    5.0   0.0     0.019        21       1      34 [.      65      96 ..      65      98 .. 0.85
   3 !    8.4   0.1    0.0016       1.8       2      30 ..     100     126 ..      99     132 .. 0.86
   4 ?   -1.8   0.0       2.8   3.2e+03      17      34 ..     193     208 ..     193     209 .. 0.86
   5 ?    4.8   0.5     0.022        26       3      31 ..     246     272 ..     244     277 .. 0.87
   6 ?    3.4   0.0     0.061        70      11      34 ..     287     308 ..     277     310 .. 0.72
   7 ?   -2.8   0.0       5.9   6.8e+03       3      11 ..     436     444 ..     435     455 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.088
    PF13176.1 11 rlgdyekAielyeraLaltkdp 32
                 r g+ ++Ai l+er  a    p
  MMETSP0890-20130614|18524_1 40 RAGRKRDAIGLLER--ATNLRP 59
                 68999*********..655554 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.019
    PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpld 34
                 a+  La+l ++ gd + A   ++r   l + p++
  MMETSP0890-20130614|18524_1 65 AWGLLAKLREEIGDVSGARATLRR--SLQYFPEN 96
                 6889********************..66666665 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0016
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                  + +La++  r++++++A  +y r  a++ 
  MMETSP0890-20130614|18524_1 100 WRRLAEIAKRSNRFDTARLHYAR--AIRA 126
                  679********************..6654 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.8
    PF13176.1  17 kAielyeraLaltkdpld 34 
                  +A+ ++++  +l+ +p++
  MMETSP0890-20130614|18524_1 193 QAEAALKQ--GLAVTPRH 208
                  69999***..99999987 PP

  == domain 5    score: 4.8 bits;  conditional E-value: 0.022
    PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkd 31 
                  l Larl ++ g+   A  +y+r  a ++ 
  MMETSP0890-20130614|18524_1 246 LSLARLEENEGRVAAARAAYRR--ATHDK 272
                  679*******************..88765 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.061
    PF13176.1  11 rlgdyekAielyeraLaltkdpld 34 
                    g++++A++l+++  a  + p+d
  MMETSP0890-20130614|18524_1 287 LNGNRKEALDLFRK--ASVRFPRD 308
                  579***********..65555554 PP

  == domain 7    score: -2.8 bits;  conditional E-value: 5.9
    PF13176.1   3 lnLarlysr 11 
                    Lar++++
  MMETSP0890-20130614|18524_1 436 ILLARAHFE 444
                  679999987 PP

>> PF13463.1  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00017       0.2       1      45 [.     204     254 ..     204     269 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00017
    PF13463.1   1 ltrqqwqiLntla.....hrrrrktl.aelskvlnidkstiseslkeLvek 45 
                  +t++++ +L+++      +r  +++  ++l+++l + ++ +s sl +L e 
  MMETSP0890-20130614|18524_1 204 VTPRHAHLLHAMGlqiytMRQNAQETrRYLTAALERGQPEASLSLARLEEN 254
                  79****************888888888*********************997 PP

>> PF01850.16  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.003       3.4      61     113 ..      84     136 ..      65     139 .. 0.88
   2 ?    2.4   1.3      0.14   1.6e+02      13     102 ..     253     359 ..     243     365 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.003
                  HHHHCCSEEE-..HHHHHHHHHHHHHCCS-HHHHHHHHHHHHHT-EEEEES-H CS
   PF01850.16  61 llllsalkilpideevaeeaaelaekyglrpnDalilAtAkahgikliaTfDe 113
                    l ++l+++p ++e++++ ae+a++ ++     l++A A++ +++ +a +D+
  MMETSP0890-20130614|18524_1  84 ATLRRSLQYFPENAELWRRLAEIAKRSNRFDTARLHYARAIRADSTFVAAWDA 136
                  567899*********************99999999***999999999988885 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.14
                  CCCCCHHHHHHHHHHH.....SEEEEEHHHHHHHHHHHHH....-TTTCHHHHHHHHHHHCCSEEE-..HHHHHHHHHHHHHCC.........S-HHHHHHHHHHHH CS
   PF01850.16  13 rgeeraeaalkllekl.....eelvtsalvlaEllyvlrr...kskrlkaaellelllllsalkilpideevaeeaaelaekyg.........lrpnDalilAtAka 102
                  ++e r +aa+++++++     +  +  + ++ Ell++ r+    ++r+++ ++ ++ +l+  +     d +va+e++  a++ +         l+ + a+++  + +
  MMETSP0890-20130614|18524_1 253 ENEGRVAAARAAYRRAthdkaSVAAWRSAARFELLNGNRKealDLFRKASVRFPRDVELHVQWARALEDNNVAREVLNTALRASpsstrlyhaLGELEAVHAVQCTH 359
                  67778888888888888888888899999999999999999998888888888888888777777777888888888888888888888888899999999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.96u 0.34s 00:00:01.30 Elapsed: 00:00:00.92
# Mc/sec: 1385.72
//
Query:       MMETSP0890-20130614|18534_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-15   56.8   0.1    2.4e-15   55.9   0.1    1.5  1  PF02617.12 ATP-dependent Clp protease adaptor protein ClpS
  ------ inclusion threshold ------
      0.037   13.7   0.3      0.053   13.2   0.2    1.2  1  PF09331.6  Domain of unknown function (DUF1985)
      0.041   12.6   0.0      0.052   12.3   0.0    1.1  1  PF04393.8  Protein of unknown function (DUF535)
       0.12   12.3   0.1       0.17   11.8   0.0    1.2  1  PF11964.3  Protein of unknown function (DUF3478)


Domain annotation for each model (and alignments):
>> PF02617.12  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1     7e-19   2.4e-15       5      81 ..      91     162 ..      87     163 .. 0.94

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 7e-19
   PF02617.12   5 kqykViLlNDdvhtmefVievLqkvf.gmteeqAeqimlevhreGravvgvgtleeaetkveqvqrkgrekgsPLsat 81 
                    ++ +L+NDdvht+e+V++++qk + + + ++A  ++++ h+eG+++v+ + +  +e+ + q+q+ g      L+a+
  MMETSP0890-20130614|18534_1  91 GYWRLLLHNDDVHTFEYVTYMIQKTVpNISHSKAFHLTMITHTEGVSTVTQTAKPLVEKFCVQLQKGG------LTAS 162
                  569**************************************************************999......7776 PP

>> PF09331.6  Domain of unknown function (DUF1985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.5e-05     0.053      40     117 ..      74     153 ..      67     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
    PF09331.6  40 kypkekkkkkkgkkekksfwkklfgkkkkvtvedveeklkkk.kkkdseerlrlallllvdgvllakskktk.iekellk 117
                  k+++e k+k k+   k+ +w+ l +++ + t+e v+++++k   + +  + + l ++   +gv   ++  +  +ek+ ++
  MMETSP0890-20130614|18534_1  74 KIDEEVKTKPKEALDKEGYWRLLLHNDDVHTFEYVTYMIQKTvPNISHSKAFHLTMITHTEGVSTVTQTAKPlVEKFCVQ 153
                  55566666666666666*************************99999999*************99998877766666665 PP

>> PF04393.8  Protein of unknown function (DUF535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.5e-05     0.052      72     147 ..      41     113 ..      25     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.5e-05
    PF04393.8  72 ealiehyelleqlfsaellkellekeglklaelekdeeeysleLsinaklekEGelaLvlrdkegqrlyeltFtll 147
                  ++++ h + +  ++s+++++   ++++ kl +++kd+ + +++ + ++ l+kEG+++L+l++ + +++  +t+ + 
  MMETSP0890-20130614|18534_1  41 QIVQPHRSSIIVMMSDNARE---RSKKGKLQTITKDKIDEEVKTKPKEALDKEGYWRLLLHNDDVHTFEYVTYMIQ 113
                  55555555555555655544...23345677778889999999999******************999988888775 PP

>> PF11964.3  Protein of unknown function (DUF3478)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.9e-05      0.17      20      97 ..      69     147 ..      65     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.9e-05
                  ---HHHH.HHHHHHH---GG--SS--EEEE-TT-----.TTSGGGG-----TTS---S-EEEE---STTTTTTT------ CS
    PF11964.3  20 klteedy.eelipaleekleehgkvrllvdleefegwe.lgalwedlklglkhlkkferiAivgdkkwleaaakllslfv 97 
                  ++t++ + ee++ + +e+l+++g+ rll++ ++++ +e +  +++++   ++h k f ++ ++++++ + +++++++++v
  MMETSP0890-20130614|18534_1  69 TITKDKIdEEVKTKPKEALDKEGYWRLLLHNDDVHTFEyVTYMIQKTVPNISHSKAF-HLTMITHTEGVSTVTQTAKPLV 147
                  6899*********************************9889999999999**99999.5778888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 536.33
//
Query:       MMETSP0890-20130614|18537_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       489  (0.0357665); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.82
# Mc/sec: 1551.79
//
Query:       MMETSP0890-20130614|18550_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   33.7   0.3    7.4e-05   22.3   0.0    2.2  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.086   11.2   0.0       0.11   10.9   0.0    1.0  1  PF03054.11 tRNA methyl transferase


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.1e-08   7.4e-05      12      38 ..      39      65 ..      38      66 .. 0.94
   2 !    9.7   0.0   0.00011      0.72      15      38 ..      93     116 .]      89     116 .] 0.79

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.1e-08
                 SSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27 12 spVtcvafspdgpllasgSrDgtirlW 38
                 ++++++ fsp+g++++  S+D+ +r++
  MMETSP0890-20130614|18550_1 39 DSISSLTFSPNGQFICATSWDNGVRMF 65
                 68***********************97 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00011
                  EEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  15 tcvafspdgpllasgSrDgtirlW 38 
                   c +fs dg  ++ +++D  +++W
  MMETSP0890-20130614|18550_1  93 LCADFSADGMQVFASGCDQQLHMW 116
                  799*****7777777777999998 PP

>> PF03054.11  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.6e-05      0.11     239     318 ..       4      81 ..       3      89 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   PF03054.11 239 iGqrkGlklggleeplyVvekdaeknevvvskgedkeallskellvkelnwlaeelkekealevevkvrhrqeevkakvk 318
                  +Gq++Gl+l+++ +p  V  +d++ n+ v++   + ++  s+     + ++++ +  ++ +  +ev+v+   ++++ +++
  MMETSP0890-20130614|18550_1   4 LGQQQGLGLQQQPQPQQVGGQDPNPNKDVIAA--NLPDSISSLTFSPNGQFICATSWDNGVRMFEVQVQEMGQQAQINAT 81 
                  7**************************99999..8899999888889999999877777777777777766555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.81
# Mc/sec: 343.18
//
Query:       MMETSP0890-20130614|18585_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-16   60.3   1.5    1.1e-15   57.7   1.1    1.9  1  PF12239.3 Protein of unknown function (DUF3605)


Domain annotation for each model (and alignments):
>> PF12239.3  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   1.1   7.9e-20   1.1e-15       2     159 ..      48     190 ..      47     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 7.9e-20
    PF12239.3   2 sWeevkeivesnelellkRspselrkYleykkeikakygsilkyilqerLrWgeeeaeeekkseapFadksdlki.llNdfpYgleegivHlvvWs.kvelevdkesgdlteesrkeieefvkktfvsrllkgedeviwFkNwksLksvkaleHvHvllk 159
                  sWee+ke v +++ +++ R p+ +r Y+ +  e++++  si++ ++ + ++ g+ + + + ++ +++ ++   +i   NdfpY + +++ H v W  ++e+            ++  ie+fv+ +f      ++++vi ++N+++L+s + + H+H+ll+
  MMETSP0890-20130614|18585_1  48 SWEELKERVLEGRFDEFCRAPNVQRTYTDFLDEVRENWHSIEDMLVCRVFEIGQINDNGKLRAFRSWDTDPPRRIiKDNDFPYFVPKEVEHKVFWCtRLEF-----------LEKPWIEQFVRLHF------PHHDVICWVNPTHLRSFPMIPHAHLLLR 190
                  7********************************************988788888877777777778877777776157*****************614444...........45678*******99......8999*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 692.61
//
Query:       MMETSP0890-20130614|18593_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 227.02
//
Query:       MMETSP0890-20130614|18594_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.2   0.0       0.02   14.4   0.0    1.4  1  PF08239.6 Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> PF08239.6  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-06      0.02       5      46 ..      78     118 ..      75     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.5e-06
    PF08239.6   5 VRsgpgtsskvigqlpkGekvtvlgeeng.WykieyngktGYv 46 
                  VR++p+t sk ig+   Ge + v  +    W k ++  + G++
  MMETSP0890-20130614|18594_1  78 VRAEPSTTSKFIGYKRFGEIIDVSHTIASlWLKLKH--EPGWM 118
                  9*************************9999**9877..55676 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       868  (0.0634874); expected 273.4 (0.02)
Passed bias filter:                      582  (0.0425688); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.73
# Mc/sec: 456.29
//
Query:       MMETSP0890-20130614|18611_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-12   47.3   5.6    2.5e-11   42.8   3.9    2.6  1  PF03097.13 BRO1-like domain
  ------ inclusion threshold ------
      0.047   13.2   0.1        1.6    8.3   0.1    2.3  2  PF04510.7  Family of unknown function (DUF577)
       0.21   10.6   5.5      0.036   13.1   0.3    2.0  2  PF09468.5  Ydr279p protein family (RNase H2 complex component)


Domain annotation for each model (and alignments):
>> PF03097.13  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   3.9   5.4e-15   2.5e-11       6     336 ..      24     459 ..      20     466 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 5.4e-15
   PF03097.13   6 plKetkevdlskpLkdyIletygedsssyeddlaelnklRqaavtpssrdesglel......llrYyaqLellekrfpdrslkv......................................eFtWydald.tgsplaqrslafEkasvlFnlaa.lysqiaasqnrssdeglkaAvkyfqrAagaFeylken....................................flhapseDlspetlkflvklmlAqAqecllekail.dkkkdsliaklaaqvaelYeealealqespvktg..............ipkewaklvqlKaeyfkAlahyyqalal.......eekkkyGeaiarLqeAlellkealklakkc.......kskselledlkelkdrikekleeaekdNdfiyhe.evpdeveltsikkaalvkalpin 336
                  p Ket  vd+ ++L  y+++     ++ ++d +a+l+  R+ ++++ +rd ++l++      + +Y  +L  + +  +d ++                                        ++ W d ld +g+  ++ + a+E as+l  +a  l+s+ia +    sd +       +++ ag+++  ++                                       h  s+Dl  ++ +++ +l lA+Aq + l ka++ +  + sl+a l++  ++ Y + ++   e+ vk                  +  +++v++K+ yf+Ala y  +  l       ++++  ++a+a L  Al+++k+a+++a+++       +   +  + l++  d +k+ +++a++ +  i h  + p+ ++++  ++ +l+ a+p++
  MMETSP0890-20130614|18611_1  24 PIKETLVVDFEQQLLPYVKKGK---EDDIKDLCAALTSARNMVIWALDRDRTTLSTdelfqkVNDYIRLLRGFLTPPRDVHKDSstlqnqemaddekeedktdqqekqenvkktvktlrfvvSYIWRDLLDvKGRDWEMGDCALEEASILLAVAQkLLSKIAREA--LSDSNSVDIHSTLRKVAGILAEARKLvseaevqsdagavaenedtssntkkdcsdiqkkhidSAHRASTDLRLALPEAWAQLALAEAQTATLNKACNaTHIEWSLVAALCSDQVQRYGNNVKGHVEALVKAApdaanvkewagkrvSHNFLKAHVEFKRLYFTALARYCSGVTLleraiseTDENLNSKALAELGTALAIHKDAQSQAANFvttakpiTFIHDPAQPLQDSLDLLKRAYNRANQLDTSIFHRgPCPELQPFP--QPKSLITATPFP 459
                  8999999999999999999866...4567999999999999999988777776666666666667777777666555444444334467777888888888888888888899999999999*********9999******************965899999999..23333334444566666666333333333456667777777788899999***********************************************658899******999999999885555555555545555666666666577999*********************999****999999999*****************999999999988878888888888888888899999999888888862455555555..444555555555 PP

>> PF04510.7  Family of unknown function (DUF577)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.022     1e+02      70     139 ..      22      87 ..       6      91 .. 0.76
   2 ?    8.3   0.1   0.00034       1.6      14      55 ..     127     167 ..     124     188 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.022
    PF04510.7  70 pmslyeefiikllenlleeiekvLlnpeevdeeeWvLAlegavklaiqlvetkskaelvkellekvvkSv 139
                   ++++e ++  + ++ll+ ++k     +e d ++ + Al++a  ++i  ++ ++++ ++ el +kv + +
  MMETSP0890-20130614|18611_1  22 DSPIKETLVVDFEQQLLPYVKK----GKEDDIKDLCAALTSARNMVIWALDRDRTTLSTDELFQKVNDYI 87 
                  5556666666666666666654....466889999*******************9999999999987766 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00034
    PF04510.7  14 eqeikesdfkiLrkiVslVayevvelqeekwdeLsdyIlsla 55 
                  +qe  ++++k Lr +Vs +  ++++++ + w e++d+ l +a
  MMETSP0890-20130614|18611_1 127 KQENVKKTVKTLRFVVSYIWRDLLDVKGRDW-EMGDCALEEA 167
                  56777899***********************.7999988766 PP

>> PF09468.5  Ydr279p protein family (RNase H2 complex component)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   7.9e-06     0.036     187     291 ..      35     138 ..      19     143 .. 0.73
   2 ?   -1.0   0.4      0.16   7.2e+02     234     281 ..     192     236 ..     167     254 .. 0.39

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.9e-06
                  XXXXX...XXXXXXXXXXTHHHHHXXXGGGSXGGGGTXXXXXXXXXX.XXXXXXX.....X......XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
    PF09468.5 187 epllsieekdapeevlellrlrtAidllksslpkealkellkellksvdFaplekylaela......sdlskkreaeedaeaaesraekkrkkeeeekkkkakeskgvkal 291
                  ++ll+  +k  ++++++l    t+  +++ + ++    +l ++      F+++++y+  l        d+ k+ ++ ++ e a ++   k+++++ +++k+++ +k vk+l
  MMETSP0890-20130614|18611_1  35 QQLLPYVKKGKEDDIKDLCAALTSARNMVIWALDRDRTTLSTD----ELFQKVNDYIRLLRgfltppRDVHKDSSTLQNQEMADDE---KEEDKTDQQEKQENVKKTVKTL 138
                  445555779999*****99999999999999999999999999....4689******99999998775555555554444444444...4666666677777777777765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.16
                  .XXXXXXX.....XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXX CS
    PF09468.5 234 vdFaplekylaelasdlskkreaeedaeaaesra..ekkrkkeeeekkkk 281
                  v   +++++l ++a+ l + r+  + ae + + +     ++++++++ kk
  MMETSP0890-20130614|18611_1 192 V---DIHSTLRKVAGILAEARKLVSEAEVQSDAGavA--ENEDTSSNTKK 236
                  2...344444444433444444444444444433221..22222111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1178  (0.0861615); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:01.06
# Mc/sec: 1128.10
//
Query:       MMETSP0890-20130614|18650_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 501.34
//
Query:       MMETSP0890-20130614|18660_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-10   39.3   0.0    1.3e-09   38.0   0.0    1.7  1  PF00106.20 short chain dehydrogenase
    5.4e-08   32.8   0.0    8.4e-08   32.1   0.0    1.2  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
     0.0097   15.8   0.1      0.026   14.3   0.1    1.8  1  PF13460.1  NADH(P)-binding
  ------ inclusion threshold ------
      0.097   11.8   0.0       0.15   11.2   0.0    1.2  1  PF05116.8  Sucrose-6F-phosphate phosphohydrolase
      0.098   12.2   0.1       0.39   10.2   0.1    1.9  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   4.8e-13   1.3e-09       2     139 ..      41     175 ..      40     187 .. 0.69

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 4.8e-13
                  EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT...-TTCCSC...HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHH CS
   PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld...dgpleel..tperlervlapkvtgawllheltld....adlgafvlfSSvagv 139
                   v++TGG +glGl+++++  e ga++ v +          +l      +g ++ +  +Dv++ +++  + ++i++++gp+d++++nag      +++l++    +e++++ +++ + g + ++  + +     +++ +v+++S ag 
  MMETSP0890-20130614|18660_1  41 KVVVTGGNRGLGLEIVKRAYECGAQVFVTCRSA-----GDDL------DGIATAYEGVDVTNTESICDFAKKIVQDHGPMDILINNAGYFYgpeEKVLDDSlnFEEEIKQ-IDICALGPLRVTSEMVKngalDNGSKVVIITSQAGS 175
                  69********************99888888744.....3333......3555666679******************************9542225555554433333333.444444444444444443654336667777776665 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.1e-11   8.4e-08       6     196 ..      49     237 ..      46     255 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 3.1e-11
                  -----HHHHHHHH---EEEE---HH----------------------TT-SGGHHHHHHHHHHH.---BSEEEEEEE-..--T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE--------.......-----------THHHHHHHHHH----S---EEEEEE---------------- CS
    PF13561.1   6 nsigwaiakalaeaGaevilttwvpaklkkkvqelakelpadvvplDvtseedvselaekvkedlggkiDilvhsian..speervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservip.......gyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggiek 196
                  +++g++i k ++e Ga+v +t ++      +++ +a+ ++     +Dvt++e++  +a+k+ +d+ g +Dil++ +++  +pee+v  +   ++ ++  + ++i a+  +++++ + ++ ++ +g+ +v ++  a +  ++       g  g + ++Aa       lA el + k i v +   G  kt+ +k ++ i +
  MMETSP0890-20130614|18660_1  49 RGLGLEIVKRAYECGAQVFVTCRSAGD---DLDGIATAYE----GVDVTNTESICDFAKKIVQDH-GPMDILINNAGYfyGPEEKVLDDS--LNFEEEIKQIDICALGPLRVTSEMVKNGALDNGSKVVIITSQAGSVQWRftqnpagGDYGHHMSRAACNIMGALLAQELKQ-KDITVLLLHPGFNKTTMTKKYEHIWE 237
                  79**********************875...7888887655....79******************8.*********996337886666663..577777899*****************99*****99**99999987655311111113335667899999999999999999.99999999999999999888877644 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   9.6e-06     0.026       1      51 [.      42      92 ..      42     245 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.6e-06
    PF13460.1  1 IaviGAtGktGrrivkellarghevtalvRnpsklpe..ssgvtivkkDlfdl 51
                 ++v+G++   G +ivk++ + g +v ++ R++    +     + +  +D+++ 
  MMETSP0890-20130614|18660_1 42 VVVTGGNRGLGLEIVKRAYECGAQVFVTCRSAGD--DldGIATAYEGVDVTNT 92
                 79*****************************873..33122333344555555 PP

>> PF05116.8  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.4e-05      0.15     121     211 ..       4      94 ..       2     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.4e-05
                  EEEE-TTS-THHHHHHHHHHHT----EEEEEE---EEE..EEETT-----HHHHHHHHHT--GGGEEEE---------TTSS-B--B-TT--H CS
    PF05116.8 121 SyfvdkekaaevlkeleqlLekreldvkviyssgkdlD..ilPkraskgeAlryLakklelelenilvcGdsgnDeellignvrgVvVgnaqe 211
                  Sy + +++a+   ++ +++  kr l+++ ++      D  ++  ++++g  l+   + +e+ ++ +++c + g+D + + + + gV V n ++
  MMETSP0890-20130614|18660_1   4 SYSIADQQARF--ANAKEINDKRYLEIESVFDGSYLKDkkVVVTGGNRGLGLEIVKRAYECGAQVFVTCRSAGDDLDGIATAYEGVDVTNTES 94 
                  66666555544..5556666789999999997776555559*************************************************875 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00014      0.39       3      90 ..      42     117 ..      41     122 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
                  EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE--- CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAg 90 
                  ++vtGG  glGle++++  e ga+ + ++ rs  + ++           g    +  +Dv++ +++    +++ ++++p++  ++ Ag
  MMETSP0890-20130614|18660_1  42 VVVTGGNRGLGLEIVKRAYECGAQ-VFVTCRS--AGDDLD---------GIATAYEGVDVTNTESICDFAKKIVQDHGPMDILINNAG 117
                  69***************9977776.5556666..233333.........555666667777777777777777777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.68
# Mc/sec: 976.16
//
Query:       MMETSP0890-20130614|18682_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-14   53.1   0.1    5.5e-14   52.1   0.1    1.4  1  PF00622.23 SPRY domain
    1.6e-12   47.3   1.4    3.6e-12   46.1   1.0    1.6  1  PF13019.1  Telomere stability and silencing


Domain annotation for each model (and alignments):
>> PF00622.23  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.1     8e-18   5.5e-14       2     118 ..     292     416 ..     291     420 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 8e-18
                  --EEEEEE-TT-S-..EEE--EETTS..--------STT-.----EEEECTTEEEE--S....S-EEE--SS--SEE-EEE-S----EEEEECTCT.-...EEEE-S----...--EE--EE------S CS
   PF00622.23   2 gkhyfevevddggeshirvGwatkea..krkgeenllgedegswgldlskgskyhavts....eetgeklqeegdviGvllDleggeisFtkngkhlg...iyafrnvefg...eklfPavslkagnai 118
                  gk+ + v++ ++g    ++Gwa  +    + ++ +++g+d+ s+++d+++g  +++ +s     +  +++q+ +d i  +lDl++++i F++ngk+lg    y++  ++++     +fPa+sl+ ++a+
  MMETSP0890-20130614|18682_1 292 GKWFYCVRLRTSGI--FQIGWAMHNFtgGNEQNGDGVGDDQLSFAYDGCRGLAFNGPDSakayGDQDQSWQA-NDYICAFLDLDERQIRFSHNGKDLGlafQYTH-GLNDDinsVSFFPAFSLEDEEAL 416
                  9************9..**********777788888*************************555555556666.*************************6532222.3555577779******9976665 PP

>> PF13019.1  Telomere stability and silencing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   1.0   5.3e-16   3.6e-12      84     144 ..      22      81 ..       9     121 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 5.3e-16
    PF13019.1  84 rlcGGKGGFGsqLraaGgrmsskkksnenndssRdLd.GrRLrtvneakalaeylakkpere 144
                   l+GGKGGFG +Lr  G   + +k+++  ++++RdL  G+RLr+ n++  l  + + +  +e
  MMETSP0890-20130614|18682_1  22 GLMGGKGGFGAMLRSMGRSSGGQKTTD--FGACRDLKtGQRLRHLNDEISLDRWHQARKRKE 81 
                  599*************99888888888..*******66**************9987654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:00.84
# Mc/sec: 1243.82
//
Query:       MMETSP0890-20130614|18725_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-25   89.9   0.0    2.2e-25   89.4   0.0    1.2  1  PF00857.15 Isochorismatase family


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.6e-29   2.2e-25       1     173 [.       9     159 ..       9     160 .. 0.97

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 1.6e-29
   PF00857.15   1 talvviDmqndflegvleseeieavvenikkllkaarkagipviftrdvheleeakgdlekkkasphfepgttgaelvdelaplegdvvvdKtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitte 173
                  tal+++D+q+ f      ++++e + + ++ l+k+a ++++p+i+t+++++                    +t +++ + l+ + + ++++Kt +s++ ++++++ L+elg + ++l+G++t+vCV++t +d+l  G +v+v +D+v++  + +++ al rl+ ++a++ t+e
  MMETSP0890-20130614|18725_1   9 TALLLCDIQSRFE---SVVHGFESLSRCASFLVKSASELDLPIIVTEQYPK-----------------AFKETIPAIKKILPEK-NTKIFEKTLFSMC-TPEVKAHLNELGCTSVILCGLETHVCVLQTSLDLLSMGIDVHVCADGVSSQRKFDRSVALSRLATSGAVISTSE 159
                  8************...***********************************.................8899999999988866.*************.********************************************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.96
# Mc/sec: 489.26
//
Query:       MMETSP0890-20130614|18719_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-31  107.4   0.0    5.9e-31  106.4   0.0    1.6  1  PF02678.11 Pirin
    5.5e-19   68.0   0.0    3.7e-18   65.4   0.0    2.1  2  PF05726.8  Pirin C-terminal cupin domain
    9.7e-05   21.6   0.2    0.00021   20.5   0.2    1.5  1  PF07883.6  Cupin domain
  ------ inclusion threshold ------
      0.028   13.6   0.0        0.2   10.9   0.0    2.1  2  PF05899.7  Protein of unknown function (DUF861)
       0.15   11.6   0.0       0.27   10.8   0.0    1.5  1  PF05423.8  Mycobacterium membrane protein


Domain annotation for each model (and alignments):
>> PF02678.11  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   2.1e-34   5.9e-31       2     107 .]      36     143 ..      35     143 .. 0.94

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 2.1e-34
                  ---GGG---.---EEEEESS-BTTB--SS----TTEEE-----EEE--S-EEEEEEEE--EEEEE----EEEE----EEEEE-----EEEEE---S....S--EEEEEEEE CS
   PF02678.11   2 vrvrralgk.aawlqlvdpFlfldhfgpaklsagedelgagfppHpHrgletvtylleGeiehrDslGnkgvirpgdvqwmtAGsGivHsEmpeee....eeslhglQlWv 107
                  ++vrr +++ +   +++dpFl+ldh+gp + ++ge   + g p+HpHrg++t++ylleGe+ h+Ds Gn+g++rpgd+q+mtAG G++H+E p++     +++ +g+Q+Wv
  MMETSP0890-20130614|18719_1  36 FEVRRPFPSnNVLGEQFDPFLLLDHLGPIEAKPGE---AVGAPWHPHRGFQTISYLLEGELVHKDSAGNTGTLRPGDFQLMTAGAGVIHDESPSDYvkqhGGRSEGFQIWV 143
                  7788888886666789*******************...78*****************************************************9988888999*******8 PP

>> PF05726.8  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.37     1e+03       8      37 ..      68      99 ..      64     125 .. 0.63
   2 !   65.4   0.0   1.3e-21   3.7e-18       2     104 .]     197     313 ..     196     313 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.37
    PF05726.8  8 agakfelplpe..gleafvyvleGsgevgger 37
                 +g+ +  p+ +  g++++ y leG++  ++++
  MMETSP0890-20130614|18719_1 68 PGEAVGAPWHPhrGFQTISYLLEGELVHKDSA 99
                 555555555441168999999***99766554 PP

  == domain 2    score: 65.4 bits;  conditional E-value: 1.3e-21
    PF05726.8   2 ldltleagakfelplpegleafvyvleGsgevgger....saieeeqlvvlg..........dgdsvevkaeekgarvlllaGePlgepvviyGpfVmntkeeieqAfedyregrfg 104
                  +d++ e++a +e++lp  +   +yv++Gs+ + ++     s+ +e++++vl+          +  ++ v  ++ ++++l+laG Pl+e ++  GpfVmnt++e++qAf dy++g+f+
  MMETSP0890-20130614|18719_1 197 IDVHAEPDAIIEHSLPMAFSLGIYVYRGSIIFPNQPsnrnSKANEGDFAVLEnvaddsstgtSLARIIVPEHAGPTKFLILAGIPLRESIARAGPFVMNTQAELRQAFLDYQSGNFA 313
                  7999**************************888877777899999******99854433211112233334447888*************************************995 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   7.7e-08   0.00021       6      52 ..      67     116 ..      64     123 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.7e-08
                  ----..EE-EBE-TT-EEEEEEEE--EEEE.E-TEEEEE-TT-EEEE-TT CS
    PF07883.6   6 ppGe..sapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag 52 
                  +pGe   ap+h H+g + + y leGe++ +   g++ +l++Gd+ +  ag
  MMETSP0890-20130614|18719_1  67 KPGEavGAPWHPHRGFQTISYLLEGELVHKdSAGNTGTLRPGDFQLMTAG 116
                  67776567799999999*********9999899***********999998 PP

>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.4e-05       0.2      24      60 ..      79     117 ..      61     130 .. 0.81
   2 ?   -0.3   0.0      0.23   6.4e+02      29      57 ..     219     248 ..     215     259 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.4e-05
                  SS.EEEE.EEEE-EEEEEE----EEEE-TT-EEEE---- CS
    PF05899.7  24 ee.dEtc.yileGevtvtpeggetvelgaGDlvvfpkgl 60 
                   +  +t+ y leGe   ++  g+t +l++GD+  + +g 
  MMETSP0890-20130614|18719_1  79 HRgFQTIsYLLEGELVHKDSAGNTGTLRPGDFQLMTAGA 117
                  44444445************************9998886 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
                  EEEEE-EEEEEE----E.EEE-TT-EEEE- CS
    PF05899.7  29 cyileGevtvtpegget.velgaGDlvvfp 57 
                  +y+ +G++ +  + +++  +  +GD++v++
  MMETSP0890-20130614|18719_1 219 IYVYRGSIIFPNQPSNRnSKANEGDFAVLE 248
                  57888888887764444488999***9987 PP

>> PF05423.8  Mycobacterium membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.9e-05      0.27      55      90 ..     182     217 ..     171     266 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.9e-05
    PF05423.8  55 yevfGpagtvadisyldadaepqrvdgaalPWslti 90 
                  +++ Gp +t + i+++d+ aep  + + +lP ++++
  MMETSP0890-20130614|18719_1 182 FDLTGPVETKTPIQFIDVHAEPDAIIEHSLPMAFSL 217
                  6789***************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:01.14
# Mc/sec: 702.24
//
Query:       MMETSP0890-20130614|18747_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-19   68.9   0.0    8.8e-19   68.0   0.0    1.5  1  PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
    3.7e-12   46.2   0.0    8.5e-12   45.1   0.0    1.6  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   1.3e-22   8.8e-19       1     111 [.      24     154 ..      24     157 .. 0.88

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 1.3e-22
    PF14226.1   1 iPvidlsp.......ssedreevakelreAceevGffqvvnhgvpeelieevfeaarefFalpleeKeklarsp..efrgysrlgsektdg........kldwkesfdlgtelpeddpl....kplegpnqw 111
                  i +id+s+       s+e++ +v +e ++A++++G+  +vnhgv+++ i+e+++aa+efF++++e K+++  ++  + +gy++ g e ++         k d+ esf+++   p+++p     +pl g + w
  MMETSP0890-20130614|18747_1  24 IKTIDISAyvdekfsSNEAKLKVQQEFDAAMHSIGMTCIVNHGVDSKIIKEAEKAAKEFFEQSEEMKRRYGDPDtyGTEGYTPRGVEAVSRsmkdgltkKADVVESFTWSSR-PPSHPSetpdRPLAGLESW 154
                  56899999998888666999**************************************************88875688***********99********************9.5566654445667777766 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   1.2e-15   8.5e-12       4      98 ..     199     301 ..     196     302 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 1.2e-15
                  EEEEEEEES...--E-EEEEEEEESSSCEEEEEEET--EEEEEE-EE.SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----.......CSEEEEEEEEEE CS
   PF03171.15   4 qlrvnrYpp...pekglglgpHtDnenriltillqddggglqfrked.kwidvppdpvallvnfgdvllvltngryksvlHrvlpnt.......rgeRislafflr 98 
                   lr++rYp+   ++  l++g HtD+    +til+  +g glq+r+e  +  dv p  +al+vn gd+ ++++ng  +s  Hrvlp         + eR++++ff  
  MMETSP0890-20130614|18747_1 199 VLRFARYPEheiEQGVLRYGIHTDY--LTFTILHA-GGPGLQVRDEFdHFSDVLPSFDALVVNGGDLTELWSNGLWRSAVHRVLPYAkfdnlsvSTERFASVFFTG 301
                  5899********99***********..*******9.********88645555555555***************************999***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.85
# Mc/sec: 1009.29
//
Query:       MMETSP0890-20130614|18755_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 348.56
//
Query:       MMETSP0890-20130614|18786_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-73  247.2   1.4    1.3e-71  240.9   0.0    2.2  2  PF04950.7 Protein of unknown function (DUF663)
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.026   13.9   0.0    1.6  1  PF08142.7 AARP2CN (NUC121) domain
      0.053   11.9   0.9      0.093   11.1   0.6    1.3  1  PF06957.6 Coatomer (COPI) alpha subunit C-terminus


Domain annotation for each model (and alignments):
>> PF04950.7  Protein of unknown function (DUF663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   2.9     0.023   1.1e+02       9      58 ..     384     435 ..     377     443 .. 0.77
   2 !  240.9   0.0   2.8e-75   1.3e-71       1     297 []     446     737 ..     446     737 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.023
    PF04950.7   9 earerfakyrglkslrtsew..denekdkslpqdyarifefenvkktkkkvl 58 
                  ++ ++ +k+  l+s +++ w  d + +d+ ++++++++ e e  +kt++k  
  MMETSP0890-20130614|18786_1 384 HSSKKRKKKLHLESEYQAAWnfDSDSDDNTENDQDDDMMETEADEKTQEKRR 435
                  56677899999*******9944455688889999999999998888887764 PP

  == domain 2    score: 240.9 bits;  conditional E-value: 2.8e-75
    PF04950.7   1 evetpedvearerfakyrglkslrtsewdenekdkslpqdyarifefenvkktkkkvlkeialkveeekriegvkvGsyvrleikevpkelaeklns....kkpiivfgllkhEekmsvvnfkvk....khrwyekplkskeeliisvGfrrFqarpifsk.ntsndkhklerylkpektlvatfygPitfpnspllvlkkveksdsplrivatGsllevdknriilkkliLtGhpykifkktalvrymFfnsedvewFkpvelftksGrrGriKealgthGafkatFdgkinaqDvVilklYkrv 297
                  ev+tpe + arerfa+yr l+s r+sewd+ e   slp++ya +++  +++  +k++l e       ++ +++++vG +v + +++  + +ae  ++    kk +++ +l +hE++ sv+++ v+      ++  k++ksk+ + ++vG+r + arpifs+   s +khk++++++p+++++++fygP tf ++p+ + ++     +p   +a+G+ll+vd++riilk++iLtG p + +k++a+v+ mF+n+edv +Fkp++l tk G +  i e+lgthG+fk +  + + ++D+ +l+lYkrv
  MMETSP0890-20130614|18786_1 446 EVDTPETMTARERFARYRFLESIRNSEWDPYE---SLPRQYAAVYQLPDYQLARKRALDE-------SQLQGHFPVGRRVDFRLECCDERAAERAQElfiqKKMLVCPSLHRHENRLSVLHCLVRapalNIEQDSKIVKSKQLIRVHVGYRSWLARPIFSTpALSGKKHKFHKFIQPNESCIVSFYGPTTFGPAPVFLYNID----QPSITIASGTLLDVDPSRIILKRIILTGIPARSHKRKAVVKHMFNNPEDVRYFKPAQLSTKHGLTANILEPLGTHGHFKVALSKSMAQSDTFLLSLYKRV 737
                  89******************************...**********************999.......5999*********************99999999899*********************94444468999************************************************************9887773....2334589********************************************************************************************8 PP

>> PF08142.7  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.7e-06     0.026       9      76 ..     283     340 ..     274     347 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.7e-06
    PF08142.7   9 lsvmkpkplswreqrgyiladrleietseeekekekrtvvveGyvrGaklkanqlvhipgiGDfqiek 76 
                  l +m  ++ +wr  r+ +la+++  + +          + ++G++r a ++  +l h+pg+G  +i +
  MMETSP0890-20130614|18786_1 283 LTKMAGREPAWRH-RSVLLAESCFRQHN---------YLNISGWIRHASMSTTNLLHVPGAGATRIIQ 340
                  5566666666663.66666666554333.........588**********************888755 PP

>> PF06957.6  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6     2e-05     0.093      45      98 ..     401     455 ..     376     469 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2e-05
    PF06957.6  45 adlgldedelveaedgl.adaeeGeneedeeegGWdveddLelPpeldvpkdkag 98 
                  a ++ d+d+++++e+    d  e e++e+ +e     e+dL++P+e+d+p++ ++
  MMETSP0890-20130614|18786_1 401 AAWNFDSDSDDNTENDQdDDMMETEADEKTQEKRRKYEEDLQFPDEVDTPETMTA 455
                  4567777666665544403445566677778888899*************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.40s 00:00:01.54 Elapsed: 00:00:01.39
# Mc/sec: 1339.55
//
Query:       MMETSP0890-20130614|18816_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 471.54
//
Query:       MMETSP0890-20130614|18841_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   20.2   0.0    0.00093   19.0   0.0    1.8  2  PF13450.1 NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.024   14.5   0.0    1.3  1  PF13738.1 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-07   0.00093       1      31 [.       2      34 ..       2      72 .. 0.82
   2 ?   -2.2   0.0      0.56   3.8e+03      44      54 ..      95     105 ..      85     119 .. 0.59

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.4e-07
    PF13450.1  1 IvGaGlsGlvaAylLaka..gkdvlvlekrdrl 31
                 IvG+  sG+ aA+   ++  + +++v++kr+++
  MMETSP0890-20130614|18841_1  2 IVGGSHSGMLAARNVLNRwkNAKITVFDKRPEP 34
                 9*************87755599********998 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.56
    PF13450.1  44 rvdygahifhg 54 
                  r+d++  +f+g
  MMETSP0890-20130614|18841_1  95 RCDLPSVYFAG 105
                  55555555544 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.6e-06     0.024     172     200 ..       2      32 ..       1      33 [. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.6e-06
    PF13738.1 172 VvGgghsAidallnLldl.g.qkltwitrsp 200
                  +vGg+hs++ a++n l   + +k+t++ ++p
  MMETSP0890-20130614|18841_1   2 IVGGSHSGMLAARNVLNRwKnAKITVFDKRP 32 
                  9*************998854589***99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.89
# Mc/sec: 336.57
//
Query:       MMETSP0890-20130614|18847_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   11.6   8.5      0.067   11.3   5.9    1.2  1  PF00771.15 FHIPEP family
      0.087   12.3   5.2      0.064   12.8   0.9    2.3  2  PF10792.4  Protein of unknown function (DUF2605)
       0.85    9.0   8.7       0.14   11.5   1.9    2.2  2  PF03352.8  Methyladenine glycosylase
        3.7    7.7  21.1       0.22   11.7   7.2    2.1  2  PF03234.9  Cdc37 N terminal kinase binding
        6.9    6.3   9.1        2.9    7.6   0.1    2.7  3  PF08336.6  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region


Domain annotation for each model (and alignments):
>> PF00771.15  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.9   2.5e-05     0.067     377     540 ..      46     210 ..      26     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
   PF00771.15 377 irdnlelkpneyriklkgvevaegelkpdkllaidsgeekeeleg.eetkepafgleavwieeeekeeaekagytvvdpstvlathlsevlkknaaellgrqevqklldelekeapklveelvpkklslselqkvlqrLlkervsirdlrtilealaeaaekekd 540
                  + + +e+++ e + + k+ve+a++++++ k l+  ++++ +e e  ++  + ++  +   +e++++e+ e++ +t+v+ ++++++  s+  +++aa+    +   kll+e+++   kl + + ++++  ++l++ +q+L ++  s ++ ++  e+++++++ke+ 
  MMETSP0890-20130614|18847_1  46 VAKAQEIEKIERERLDKEVEAANAKVEAAKALLAAAQQKAQETEStASSIHDSTTSSDHNVEPSTREDSEESSATTVTEDEAITETASSSTETEAATSSLSDGSAKLLEETSELLTKLRSIMSSEATLFASLNEKIQALSTQTSSTKEYTSATETITTTEDKEDA 210
                  555666666666666699*********999998888888777755155567778888899**************************************999*******************999999999****************************99988765 PP

>> PF10792.4  Protein of unknown function (DUF2605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   2.3e-05     0.064      35      71 ..      48      84 ..      34      97 .. 0.84
   2 ?    0.6   0.1      0.15     4e+02      37      69 ..     165     199 ..     138     213 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-05
    PF10792.4 35 klsvlseeeqeallervkeaqkevkatkalvkAsdqq 71
                 k++ +++ e+e+l ++v++a+++v+a+kal+ A++q+
  MMETSP0890-20130614|18847_1 48 KAQEIEKIERERLDKEVEAANAKVEAAKALLAAAQQK 84
                 556688999***********************99986 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.15
    PF10792.4  37 svlseeeq..eallervkeaqkevkatkalvkAsd 69 
                  s++s+e    ++l e++++  ++ ++tk   +A++
  MMETSP0890-20130614|18847_1 165 SIMSSEATlfASLNEKIQALSTQTSSTKEYTSATE 199
                  33333332123455555555555555555555554 PP

>> PF03352.8  Methyladenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.9   5.3e-05      0.14      45     132 ..      28     116 ..      11     153 .. 0.77
   2 ?    1.1   0.2     0.081   2.2e+02      84     139 ..     170     229 ..     147     253 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-05
    PF03352.8  45 LkkreafreaFagfdvekvaklte.edverlledkgiirnrlKieaviknArailklqeefgsfseylwsfvdkkpiknkvksleevpa 132
                  L+ r ++++ F+  ++e+vak +e e++er   dk++   ++K+ea+ +   a+++ ++e++s ++ + + + ++  + + ++ e+ ++
  MMETSP0890-20130614|18847_1  28 LRGRRNLQHTFDLLEPEQVAKAQEiEKIERERLDKEVEAANAKVEAAKALLAAAQQKAQETESTASSIHDSTTSSDHNVEPSTREDSEE 116
                  78899**************99987589******************99887777777777777777777665555444444333333332 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.081
    PF03352.8  84 rlKieaviknArailklqe....efgsfseylwsfvdkkpiknkvksleevpakteesea 139
                  ++ + a +++  ++l+ q+    e++s  e + +  dk+  + + ++ ++  ++tees++
  MMETSP0890-20130614|18847_1 170 EATLFASLNEKIQALSTQTsstkEYTSATETITTTEDKEDATPSPAEGTDQSSTTEESTT 229
                  333333333333333222211114444455555555555555555555555555555555 PP

>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.2   8.1e-05      0.22      41     163 ..      50     172 ..      43     176 .. 0.73
   2 ?    2.7   2.2     0.044   1.2e+02      56      98 ..     172     231 ..     166     266 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.1e-05
    PF03234.9  41 reqrkkeieelekelkinkkllervdkllselkeeeelssekvlkklneeadkedkasveeeee..eqpkynemledLldqv.kdevdekkaaklieelkkhrkklkkeekelekkleelekeekk 163
                  +e  k+e+e l+ke++  ++++e ++ ll+++++++ +++e+ ++++++++ ++d+ ++ ++ e  e  + + + ed  + + +++  ++++++ +++l++  +kl +e++el +kl  +   e++
  MMETSP0890-20130614|18847_1  50 QEIEKIERERLDKEVEAANAKVEAAKALLAAAQQKA-QETESTASSIHDSTTSSDHNVEPSTREdsEESSATTVTED--EAItETASSSTETEAATSSLSDGSAKLLEETSELLTKLRSIMSSEAT 172
                  556799*************************99884.4556677777777777777644443330033344444443..55645666666799999********************9988877765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.044
    PF03234.9  56 kinkkllervdkllselkeeeelssekvlkklneeadkedka...................s 98 
                  +  ++l+e+++ l +++++++e+  ++ +++++ ++dked +                   +
  MMETSP0890-20130614|18847_1 172 TLFASLNEKIQALSTQTSSTKEY--TSATETITTTEDKEDATpspaegtdqsstteesttvQ 231
                  44556666666666666655322..3344445555555555433344444433333333322 PP

>> PF08336.6  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.8     0.015        42       5      52 ..      45      92 ..      43      99 .. 0.86
   2 ?    7.6   0.1    0.0011       2.9       8      50 ..     151     193 ..     143     214 .. 0.62
   3 ?   -3.5   0.1       2.8   7.6e+03      86     110 ..     224     250 ..     218     253 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.015
    PF08336.6  5 elekLlelEkelvdnLekYvekleekletlkrfleelkeehekakedk 52
                 ++ k  e+Ek   ++L+k ve+ + k+e  k +l++ +++ +++++  
  MMETSP0890-20130614|18847_1 45 QVAKAQEIEKIERERLDKEVEAANAKVEAAKALLAAAQQKAQETESTA 92
                 67788899999999********************99999998887754 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0011
    PF08336.6   8 kLlelEkelvdnLekYvekleekletlkrfleelkeehekake 50 
                  kLle  +el+++L++ ++ + + + +l++ +++l+++++++ke
  MMETSP0890-20130614|18847_1 151 KLLEETSELLTKLRSIMSSEATLFASLNEKIQALSTQTSSTKE 193
                  5666666666666666666666666666666666666655554 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.8
    PF08336.6  86 eeelkeleelrk..klPteeDlegaak 110
                  +ee + ++++++    Pt ++ + +a 
  MMETSP0890-20130614|18847_1 224 TEESTTVQTNSEenATPTVNESTTSAS 250
                  334444444444335677766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1940  (0.141896); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        52  (0.00380339); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.44u 0.41s 00:00:01.85 Elapsed: 00:00:00.98
# Mc/sec: 660.22
//
Query:       MMETSP0890-20130614|18857_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       592  (0.0433002); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.35s 00:00:01.29 Elapsed: 00:00:00.97
# Mc/sec: 1469.93
//
Query:       MMETSP0890-20130614|18893_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 216.06
//
Query:       MMETSP0890-20130614|18932_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   13.2   0.5      0.043   12.7   0.3    1.4  1  PF01785.12 Closterovirus coat protein


Domain annotation for each model (and alignments):
>> PF01785.12  Closterovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   3.1e-06     0.043      20      69 ..      53     107 ..      37     143 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-06
   PF01785.12  20 kellekfkealktkl.....klsdedilvhlalllyrlanlsTSeKvkyndenty 69 
                  +++++k++e  +        + +++ ++++ all++ la+ +TS+Kv+++++ t+
  MMETSP0890-20130614|18932_1  53 RSFRQKCEEHARLAAtsvglTDPSDLVEKTAALLQIELAATTTSQKVQVKPQVTL 107
                  444444444433333445556677889999*******************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       997  (0.0729228); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 644.02
//
Query:       MMETSP0890-20130614|18956_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.94
# Mc/sec: 384.95
//
Query:       MMETSP0890-20130614|18957_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.2   0.2       0.14   11.7   0.2    1.1  1  PF04201.10 Tumour protein D52 family


Domain annotation for each model (and alignments):
>> PF04201.10  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     1e-05      0.14       9      58 ..      28      77 ..      22      84 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   PF04201.10  9 veakedvnesvsatksvlseeekeeLkaeLakleeeistLrqvLaakekh 58
                  e+  ++ +++  +k+v+ e+e + ++ e   +e ei  Lr++ + + + 
  MMETSP0890-20130614|18957_1 28 AEEATSTKAQILPSKPVVIEKEMNPIRIETPSVEKEIRPLRNLNSTRLQE 77
                 6888899999999*****************************98877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 529.90
//
Query:       MMETSP0890-20130614|18974_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-93  312.5   0.0    1.5e-92  310.3   0.0    2.0  1  PF01238.16 Phosphomannose isomerase type I
  ------ inclusion threshold ------
       0.02   13.8   0.1       0.03   13.2   0.1    1.2  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> PF01238.16  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.3   0.0   2.2e-96   1.5e-92       2     366 ..      62     437 ..      61     442 .. 0.89

  Alignments for each domain:
  == domain 1    score: 310.3 bits;  conditional E-value: 2.2e-96
                  EEEE-EEB-----..-..SHHHHHHHHH..-TT..TTS---EEEEE--TTS--ECTTTEHHHHCHHHHHHH-GGHHHHH---S-SEEEEEEE-SS---EEE---S....HHHHH.TTTT-SS----EEEEEEEEEE-EEEE..HHHHHHHCCC-HCCHCCE--HHHCCHHHHHHHCH---HHHHHCCCHHHHHE.EECTS-HHCCCHHHHCCCCCCCC-HHHCCCC-........................HHHHCCHCHHHSTT----B-..SS...--....EECCHCCHHC-SSE.EEEEEEES-EEEEE---ECCEEEHHHHHCH.EEEEEEGGGCEE--BS.CEEEEEEEE--SSCCECCEEES--.---EEEE-TT--EEEEEEE--E CS
   PF01238.16   2 fkLqcgvqnyaWGkiGsesalakllaas..dPsieedkpyaElWmgtHpkgpskvlnkklkdvvlkellaelresvgkkfgeelpfLfKvLsvekvlSiqvHPdKklaeilhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslieagdpealkkkkvlqklFssllnsekekikqklallveriqssdaevnktd........................laelidrlneqyPddiGlfa.llLNlvkLnpGEAmflkandphaylsGdivecmaasdnvvRaGlTpKfidvkelvemltYkykpsdelklqqte.slldasvlydppieefavektklk.kgeatilplesasiliaveGta 366
                  ++L+++v++yaWG  G++s++a+++  s  + si+ + pyaElW+gtHp+gpsk  +++         l     +v ++  ++lp L KvLs+ k+lSiq+HPdK  a++lh  +p++Y+d NhkpE+aiAlt+Fe++cgfr l+ei+  l +  e+a+ i  +++ ++  +  ++e     ++ ++++l +lF s++  + e+ k +la l++++ s++++                              a  + rl eq+P+d G +a l+LN++ + pGE  f+ an+phay+ G+i+ecma+sdnvvRaGlTpK +dv++lv+mltY++   d  +   ++    + ++ y+pp+ ef+v  t+++ + ++t++p + +s+l++veG +
  MMETSP0890-20130614|18974_1  62 YRLRPTVKQYAWGIRGADSRVARFALESgtIESIDLSAPYAELWIGTHPSGPSKLDDGT--------AL----ALVVESADGQLPWLLKVLSAGKALSIQAHPDKTTAAQLHLSNPEQYKDSNHKPEMAIALTPFEAMCGFRRLSEIAVNLRRHREFANCIDVQAQLQVFTASPVDE-----KE-QREALMALFQSFMSCDPEVSKVQLAALIKKLRSEQSKSMRASgakhinppnndvsgvysespwerkAARAVLRLAEQFPGDAGAMApLFLNYLLIAPGESFFMAANEPHAYVAGEILECMACSDNVVRAGLTPKHKDVQNLVDMLTYTMGGPDIEFGILEHqVPGTHTLRYTPPVPEFEVLITTVEpGYSYTMEPIQVPSVLLCVEGMG 437
                  79*********************9988866788*********************99988........22....3456677899********************************************************************************99988887777777.....22.356899***********************999999544443346677788899*********9999899999***************************************************************************998776554443331345557889*************9978899****************87 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.3e-06      0.03     216     303 ..     173     263 ..     149     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-06
   PF01041.12 216 vslGynlrltelqAavglaqLekldeliarrreiaelykeelaelpgleelteptees...eaawhlfpvllkeeaa.vsrdelvealkeeg 303
                  +++ + + lt+++A +g ++L+++   + r re a++++ + + l+ ++  +++++e+    +a ++  + +++e+  v+ ++l+++l++e+
  MMETSP0890-20130614|18974_1 173 HKPEMAIALTPFEAMCGFRRLSEIAVNLRRHREFANCIDVQAQ-LQVFTASPVDEKEQreaLMALFQSFMSCDPEVSkVQLAALIKKLRSEQ 263
                  22678999*****************************998877.8888888888888777767888888999999888999*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.77
# Mc/sec: 1549.85
//
Query:       MMETSP0890-20130614|18980_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 107.53
//
Query:       MMETSP0890-20130614|19007_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 182.58
//
Query:       MMETSP0890-20130614|19030_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.71
# Mc/sec: 418.52
//
Query:       MMETSP0890-20130614|19060_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-12   45.9   0.0      6e-12   45.4   0.0    1.2  1  PF05903.9 PPPDE putative peptidase domain


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   4.4e-16     6e-12       3     129 ..      57     177 ..      55     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 4.4e-16
    PF05903.9   3 vklivydlsliktglarrvsllllGkklegiyhtgvevygkeyalggkekeesgitelkpkttsegakfresielgeTevteeevreil..eelsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPkw 129
                  v+  vy++      l++++s++ + + l  i h+gv + ++ey+++ +   es+  e+  +    g  ++ s +lg  +++ee++ + l  +++++e+  d Yn +++NCnhF++ l++ +  +++P+ 
  MMETSP0890-20130614|19060_1  57 VTCTVYEIG---GDLTKVLSTTCSKD-LPLIPHVGVRIFDREYFYSDH--IESRPIEVMAQM--LGTFPQVSFDLGPPKISEEDFFAWLnsAQVENEWCADMYNVFDHNCNHFAKVLMETVASNPLPDD 177
                  677888888...55667777766665.88899*************883..334444444444..555677888****************77788889***************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 736.88
//
Query:       MMETSP0890-20130614|19077_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       639  (0.0467379); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.92
# Mc/sec: 210.98
//
Query:       MMETSP0890-20130614|19078_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-09   34.8   0.0    1.4e-08   34.3   0.0    1.1  1  PF00650.15 CRAL/TRIO domain
     0.0053   17.0   0.9      0.009   16.3   0.1    1.7  2  PF11740.3  Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     2e-12   1.4e-08      18     133 ..     152     274 ..     143     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 2e-12
   PF00650.15  18 grpvlylrlgrfdpk....klsee......elvrllllvlerllkllee.dgqiegvtvviDmkglslskmlwkp.isllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikf 133
                  +  ++++r+g+++ k    k          +++ +   v+er+   l   +g+  +v+ v D++g+ l+  +++   + l   +k+    +P    + +++n P+l+++++k++ p+ ++++++K+kf
  MMETSP0890-20130614|19078_1 152 DGLIYVIRAGQVNDKslmsK---VdadelaDFFLYAKAVNERVAARLSAnTGKLSSVVTVNDLSGVDLF--GDSRfRDALSAASKTADSIFPGLAAETILLNLPFLVRTLVKVFTPLFPPSVQKKLKF 274
                  5578999*******966662...1344444888888889999998777778****************55..555559*************************************************99 PP

>> PF11740.3  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.3e-06     0.009      20      72 ..       4      58 ..       2      65 .. 0.87
   2 ?   -3.5   0.0       1.8   1.2e+04      43      52 ..      91     100 ..      83     113 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-06
    PF11740.3 20 PtveaVReelg..tGSpstisrvlkewreeqraaaesaapelPealsealaelva 72
                 P+ve +  +     GSpst++++ ke+  + +aa + a++ lP+ ++ea +++++
  MMETSP0890-20130614|19078_1  4 PSVEELMSQSCdvDGSPSTVHSAVKELALRTAAARNNAVDLLPDGVAEADSQAAE 58
                 89999999999999*********************999999*****887666655 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.8
    PF11740.3  43 ewreeqraaa 52 
                  ewr+++++++
  MMETSP0890-20130614|19078_1  91 EWRASAQGRP 100
                  4555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 1107.41
//
Query:       MMETSP0890-20130614|19120_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-61  207.9   2.0    1.4e-61  207.5   1.4    1.1  1  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.5   1.4     1e-65   1.4e-61       2     213 .]      44     262 ..      43     262 .. 0.97

  Alignments for each domain:
  == domain 1    score: 207.5 bits;  conditional E-value: 1e-65
   PF01988.14   2 lraaVlGlnDGlvstfalvaGlagaaassklvllaGlaglvAgaiSmalGeylsvkaerdleeaelereqqeverspegeveeladilkakglseetaaqvaeeltakeda.ldfllkeelglee.estsrplkaaltsglsfllggliPllpyllvp....sas..eallvsvivtllaLfllGvvkarvsgksylrsalrtliigllaaaatyllgrl 213
                  ++++V+G++DG+++tfa+v+++aga+  +k v+l+Gla+l+A++iSm+lG+y+s+ aer  ee e ere++e+e+ p+ge+ee+ +i+ +kg+se++a+ +++ l++++d  ++++  +elg+   +++s+ +k++l+++lsf ++g++P+l+y+l++    +      +++++++t+l++f+lGv ka ++++s ++s+l ++++g+ aa +++++g l
  MMETSP0890-20130614|19120_1  44 VKSLVYGGLDGIITTFAIVSAVAGAGMPTKSVILLGLANLLADGISMGLGDYISEVAERRFEEHEYEREKWEFENFPQGEIEEMIQIYINKGVSEADAKLIMTTLSKYPDVfVRLMCVDELGFIApDEESECWKNGLVTMLSFDTFGAVPILVYFLFAdflkN-NanDLFALAALATALTMFALGVTKASFTKQSKIKSGLIMVFNGGFAASVAFAIGFL 262
                  799*********************999*************************************************************************************************9999****************************9876532.15699************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       617  (0.0451287); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1248.63
//
Query:       MMETSP0890-20130614|19139_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-13   48.4   0.4    1.5e-12   47.2   0.3    1.7  1  PF00249.26 Myb-like DNA-binding domain
     0.0001   22.2   0.8    0.00026   20.8   0.6    1.8  1  PF13921.1  Myb-like DNA-binding domain
  ------ inclusion threshold ------
        2.3    8.9   5.8        1.3    9.7   1.5    2.3  2  PF00639.16 PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.3   3.3e-16   1.5e-12       2      47 ..      86     129 ..      85     130 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 3.3e-16
                  TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
   PF00249.26   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                  grW+ eE+e ++++ + +G + Wk++++++  +Rt+ q++s+ qky
  MMETSP0890-20130614|19139_1  86 GRWSVEEHEEFLRCLRIYGRE-WKKVSQRIT-TRTAAQIRSHAQKY 129
                  8******************99.********9.*************9 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.6   5.8e-08   0.00026       1      41 [.      88     128 ..      88     152 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.8e-08
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelgrRtplacqdrwkn 41 
                  W+ eE e+ l+  + yg++W+++++++  Rt+ +++ + ++
  MMETSP0890-20130614|19139_1  88 WSVEEHEEFLRCLRIYGREWKKVSQRITTRTAAQIRSHAQK 128
                  ***************************66*******99887 PP

>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5   0.00028       1.3       9      60 ..     115     167 ..     105     177 .. 0.86
   2 ?   -1.1   0.1      0.63   2.9e+03       1      30 [.     182     212 ..     182     219 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00028
   PF00639.16   9 seeekeeakakaeelleqlksgedtFaelakeySddkssakngGdLgw.ferg 60 
                  ++++ ++++  a++  ++l++++++ a++a+ +  d+++++++Gd g+ f++g
  MMETSP0890-20130614|19139_1 115 TTRTAAQIRSHAQKYFKKLEEEAAAAAAAAALNNRDREKKSTQGDSGEsFASG 167
                  78999*******************9********************99536555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.63
   PF00639.16   1 HIliktke.seeekeeakakaeelleqlksg 30 
                  H l ++++  + + +ea a ++++l  l+++
  MMETSP0890-20130614|19139_1 182 HYLRSHSDrRQPTIDEAIADIDQVLHSLEAK 212
                  6777777766778889999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       993  (0.0726302); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.65
# Mc/sec: 1135.50
//
Query:       MMETSP0890-20130614|19138_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.89    8.8  38.3      0.033   13.5  15.6    2.8  2  PF00038.16 Intermediate filament protein


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   5.3      0.03   4.1e+02     136     256 ..      32     153 ..      18     164 .. 0.57
   2 ?   13.5  15.6   2.4e-06     0.033      63     198 ..     330     467 ..     310     504 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.03
   PF00038.16 136 lkklheeEvkelqkqik..eqvnvevdaarkldLtkilkeiraqyeelaeknreeaeewykaklee...lqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleee 256
                  ++++ ee v+++++  +  e++ +e    + l+L++  +e+ +   ++ + +++e+ +w + k ++   l++ +  +  +l sak e + l+++  sle+el  l + ++ l r  ++l++   +e
  MMETSP0890-20130614|19138_1  32 VRSVLEEAVDDVEEAYRvnEKIRLE----SDLELARLEAEVARLELSQLRDKQAELIRWRRDKAASarrLRDDVCLDALNLASAKAEREALKKTNHSLEVELRRLPALERELGRLQRDLDAARRRE 153
                  5566666666666644311333333....3355666555554444455555555555555555443111455555666667777777777777777777777777777777666666666655555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.4e-06
   PF00038.16  63 ldeltkerarleleldnlreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakveslkeelefl...kklheeEvkelqkqikeqvnvevdaarkld.Ltkilkeiraqyeelaek.nreeaeewykakle 198
                  + +l +   +lele + lr+e edl++ +++  + +e ++++l++  ++l++a +a+++ e++  s +e ++fl    k  eeE + l+++    ++ e +  r+ d   ++ + + + ye+++++ n++e e++y++k+ 
  MMETSP0890-20130614|19138_1 330 IIALDERARKLELECSALRAEKEDLKAALDSTESVKEFLNTKLKESEQKLEQAQIAHIEQERQRKSDHEVIAFLdarNKELEEECNSLKQRQ---ITEESQLRRQRDeAIAAKQSLSTSYEKQIAHlNQNERENKYQRKIL 467
                  5566777789***************************************************************8333456677777776643...33333333444425567788999***9876538999******9973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1854  (0.135606); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:01.02
# Mc/sec: 1186.43
//
Query:       MMETSP0890-20130614|19149_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-08   33.2   8.5      4e-08   32.9   4.8    2.0  2  PF00170.16 bZIP transcription factor
     0.0011   18.6  15.1     0.0024   17.5  10.4    1.5  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
     0.0024   17.5  12.0     0.0024   17.5   8.3    2.2  2  PF07716.10 Basic region leucine zipper
  ------ inclusion threshold ------
        1.9    7.1   9.4        3.4    6.3   6.5    1.4  1  PF01698.11 Floricaula / Leafy protein


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   4.8   1.2e-11     4e-08       3      50 ..     346     393 ..     344     402 .. 0.91
   2 ?   -3.8   0.0       3.5   1.2e+04      32      42 ..     494     504 ..     490     504 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.2e-11
                  XXCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......H CS
   PF00170.16   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                  e k+e  +q+NRe Ar  R+RKk+++++L++ v+eL a+ ++L + +e
  MMETSP0890-20130614|19149_1 346 EEKAELTRQRNREHARSTRKRKKQYVDQLKRQVAELLAKQQMLNSMNE 393
                  6799999*********************************99998766 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.5
                  HHHHHHHHHHH CS
   PF00170.16  32 eekvkeLeaeN 42 
                  ++++++L+a+N
  MMETSP0890-20130614|19149_1 494 QRRIDKLQAKN 504
                  78888888887 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  10.4     7e-07    0.0024      78     193 ..     256     389 ..     212     423 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7e-07
    PF04889.7  78 kkkralenakkeeeleaakeaeededeekeakrkkk......leeareidaddsdkseee...............sdesdddsdddddeDetaeLlrELekiKkeraeekereeeekaaeeeke...reeeiltgNPLln 193
                   +++++e+++++ ++++ +  e+d  ++  +krk+k      +++++ei a +++    +               +  +dd++++dddeDe++   +E + + ++r++e++r  ++++++   +   + +e+l +  +ln
  MMETSP0890-20130614|19149_1 256 ANEQEIESERESPSERSDSASENDGGSS--NKRKRKngitlkSKNRSEITAKSKK----RipnsllsaggfmmgyDGIEDDNDEEDDDEDEEELAPEEKAELTRQRNREHARSTRKRKKQYVDQlkrQVAELLAKQQMLN 389
                  3333444443333333333333333333..3444443466544444555555543....13456999******97555555555567778877778999***********999998887654440004455555666666 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   8.3   7.1e-07    0.0024       3      49 ..     347     393 ..     346     396 .. 0.90
   2 ?   -3.1   0.1       1.9   6.3e+03       2      12 ..     593     603 ..     593     603 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.1e-07
   PF07716.10   3 deyrerRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqkve 49 
                  ++ +  R rNre Ar +R++kk++ ++l+++v eL ++ + L   +e
  MMETSP0890-20130614|19149_1 347 EKAELTRQRNREHARSTRKRKKQYVDQLKRQVAELLAKQQMLNSMNE 393
                  678899*******************************9999877665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.9
   PF07716.10   2 ddeyrerRrrN 12 
                  ++e ++rR +N
  MMETSP0890-20130614|19149_1 593 SAEAEVRRDKN 603
                  578999**999 PP

>> PF01698.11  Floricaula / Leafy protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.5   0.00099       3.4     139     231 ..     252     359 ..     226     409 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00099
   PF01698.11 139 taldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkse..........ededeeeeededeeg.....sgedgeerqreh 231
                  t+ +a  qe  se ++ +e+ +++s++ g ++++ + ++  + +++++++ ++k+k++  ++l s+          ed+++ee++dedee+     ++e  ++r+reh
  MMETSP0890-20130614|19149_1 252 TVPQANEQEIESERESPSERSDSASENDGGSSNKRKRKNGITLKSKNRSEITAKSKKRIPNSLLSAggfmmgydgiEDDNDEEDDDEDEEElapeeKAELTRQRNREH 359
                  34456666766666666677777777776666666666666666666666666777777777666689******9844444444444444434433666667999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1119  (0.0818461); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:01.15
# Mc/sec: 1623.74
//
Query:       MMETSP0890-20130614|19159_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.6  13.3    1.5e-08   34.1   8.3    2.0  2  PF13639.1  Ring finger domain
      1e-07   31.5  10.4    2.4e-07   30.3   7.2    1.7  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    1.5e-07   30.8  12.8    2.7e-07   30.0   8.9    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0045   16.9   9.5      0.012   15.6   6.6    1.7  1  PF12678.2  RING-H2 zinc finger
     0.0055   16.4   7.9     0.0067   16.1   4.1    2.1  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
  ------ inclusion threshold ------
      0.028   14.1   6.4      0.056   13.1   4.4    1.5  1  PF06906.6  Protein of unknown function (DUF1272)
      0.038   13.4   5.2      0.087   12.3   3.6    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
       0.17   11.3   5.3       0.32   10.4   3.7    1.5  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.29   10.8   2.0        0.5   10.0   1.4    1.3  1  PF03766.8  Remorin, N-terminal region


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   8.3   9.6e-12   1.5e-08       2      45 ..      21      66 ..      20      67 .. 0.88
   2 ?   -2.3   0.0       2.4   3.6e+03       6      23 ..     257     270 ..     255     276 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 9.6e-12
    PF13639.1  2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrs.sn..sCPlCrk 45
                 +C +Cl+e++  e+ + ++C+H+f+e+C++  l++ ++   CP+Cr+
  MMETSP0890-20130614|19159_1 21 VCGVCLEEVE-MERQTITKCSHTFCEDCIRNVLSRgHKacLCPMCRT 66
                 6********6.599*******************8733366******8 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.4
    PF13639.1   6 CldelsegeevvrlpCgH 23 
                  C ++l    ++++l+Cg 
  MMETSP0890-20130614|19159_1 257 CAEPL----DFIQLRCGK 270
                  44555....689999985 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   7.2   1.6e-10   2.4e-07       4      46 .]      21      66 ..      18      66 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.6e-10
    PF13923.1  4 sCpiCleelen..pviltpCgHlyCkkCieqwlekskkk...CPiCrn 46
                 +C +Clee+e     ++t+C H +C++Ci ++l++   k   CP+Cr+
  MMETSP0890-20130614|19159_1 21 VCGVCLEEVEMerQ-TITKCSHTFCEDCIRNVLSR-GHKaclCPMCRT 66
                 7*******977756.56******************.5544559***96 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   8.9   1.8e-10   2.7e-07       1      41 []      22      64 ..      22      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.8e-10
                 -TTTSSS-SSEE..BSCTS-EE-CHHHHHHHCS.T-----TTT CS
   PF00097.20  1 CpiCleeakepn.elleCkHsfCskCirkilks.rkkvkCPlC 41
                 C +Clee++ +  ++++C H+fC++Cir++l+  +k++ CP+C
  MMETSP0890-20130614|19159_1 22 CGVCLEEVEMERqTITKCSHTFCEDCIRNVLSRgHKACLCPMC 64
                 99*****9988879******************8677777**** PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.6   7.9e-06     0.012      15      75 .]      11      65 ..       2      65 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.9e-06
    PF12678.2 15 wdised.n...CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk...tCPlcr 75
                 +d++++ n   C++C +e+         +   ++ ++   +C+H F  +Ci++ l +      CP+cr
  MMETSP0890-20130614|19159_1 11 IDAKKEdNvvvCGVCLEEV---------EM--ERQTI--TKCSHTFCEDCIRNVLSRGHkacLCPMCR 65
                 4444442345699999999.........22..33444..46**************7766689*****8 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   4.1   4.4e-06    0.0067      48      82 ..      35      69 ..      21      72 .. 0.87
   2 ?   -2.2   0.0       2.2   3.4e+03      34      53 ..     253     272 ..     249     282 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.4e-06
    PF12861.2 48 vlGkckhnfhlhcilkwletetskglcpmcrqtfk 82
                  + kc+h+f + ci + l++ +   lcpmcr +++
  MMETSP0890-20130614|19159_1 35 TITKCSHTFCEDCIRNVLSRGHKACLCPMCRTQLV 69
                 5789***************************8765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.2
    PF12861.2  34 tcpsckfpGddcplvlGkck 53 
                  t p+c  p d   l  Gk +
  MMETSP0890-20130614|19159_1 253 TKPDCAEPLDFIQLRCGKWR 272
                  67999999999888888754 PP

>> PF06906.6  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.4   3.7e-05     0.056       8      52 ..      22      69 ..      19      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.7e-05
    PF06906.6  8 CecCdkdlppdseealiCsfEcTfCadCaeellee.....vCPncgGelv 52
                 C +C ++++ + ++ + Cs  +TfC+dC +++l++      CP c  +lv
  MMETSP0890-20130614|19159_1 22 CGVCLEEVEMERQTITKCS--HTFCEDCIRNVLSRghkacLCPMCRTQLV 69
                 999*********9999998..6**********9543333479***99987 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.6   5.7e-05     0.087       6      58 .]      15      63 ..      11      67 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.7e-05
                 XXXXX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B---- CS
    PF13445.1  6 hfhsifaCpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCPy 58
                 +  ++ +C ++ e +  e +   +  C h+++++++ + ++ g    + + CP+
  MMETSP0890-20130614|19159_1 15 KEDNVVVCGVCLEeVEMERQT--ITKCSHTFCEDCIRNVLSRG---HKACLCPM 63
                 567889*******88555555..566************99933...34788885 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.7   0.00021      0.32      26      56 ..      35      64 ..      10      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00021
                 EES----EEEHHHHHHHH.TTT--B------- CS
    PF11789.3 26 tskkCnHvFEkeaIlkml.krkkkvkCPvaGC 56
                 t +kC H+F ++ I + l + +k++ CP+  C
  MMETSP0890-20130614|19159_1 35 TITKCSHTFCEDCIRNVLsRGHKACLCPM--C 64
                 457***************66788999**9..7 PP

>> PF03766.8  Remorin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.4   0.00033       0.5      12      37 ..     233     259 ..     231     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00033
    PF03766.8  12 ianPPPa.keksDdSKAlavvekkaee 37 
                  + nPPPa    +DdS+A +v  +   e
  MMETSP0890-20130614|19159_1 233 PSNPPPAvVLTPDDSRAWIVTKPDCAE 259
                  689***9999*******9998777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:01.15
# Mc/sec: 776.75
//
Query:       MMETSP0890-20130614|19167_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.13   11.5   0.0    1.0  1  PF12074.3 Domain of unknown function (DUF3554)


Domain annotation for each model (and alignments):
>> PF12074.3  Domain of unknown function (DUF3554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.3e-06      0.13     176     216 ..      17      58 ..      14      62 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.3e-06
    PF12074.3 176 eedllwvlralealfkalkselaedk.vialgqAliyvllsp 216
                  e d+l +++  +a+++++++ l+++   i + +++i +ll++
  MMETSP0890-20130614|19167_1  17 EGDILDLMKKTKAVPENFREHLEAFVaAINWKETWIRILLAS 58 
                  6799***********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.85
# Mc/sec: 177.61
//
Query:       MMETSP0890-20130614|19185_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.4   0.6     0.0024   17.4   0.4    1.1  1  PF12429.3  Protein of unknown function (DUF3676)
  ------ inclusion threshold ------
       0.13   11.6   7.8       0.15   11.3   5.4    1.0  1  PF03064.11 HSV U79 / HCMV P34
        0.5    9.5   4.4       0.79    8.8   3.0    1.4  1  PF03261.10 Cyclin-dependent kinase 5 activator protein


Domain annotation for each model (and alignments):
>> PF12429.3  Protein of unknown function (DUF3676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.4   5.2e-07    0.0024      50      88 ..      44      82 ..      14     100 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.2e-07
    PF12429.3 50 ssvsepAiAaesaensrsednaqlsegetsqqatlnedk 88
                 ss   pA   e aen++++ n ql++++t qq   +e +
  MMETSP0890-20130614|19185_1 44 SSPRSPASISEHAENNLKQTNQQLHHEQTKQQPEFDETE 82
                 455579999***********************9888765 PP

>> PF03064.11  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.4   3.4e-05      0.15     177     247 ..      11      77 ..       5      82 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.4e-05
   PF03064.11 177 RrdedskkkkedrkkkqeekrtsdedkrsgkgdesGsggqsskstkqrrledepdkekRqkhhddeRrlee 247
                  Rr+ d kk+  ++  k+ +k++s+++ +  +g+e  s ++ ++ +     e++ ++ + q hh++ ++++e
  MMETSP0890-20130614|19185_1  11 RRVPDKKKEASRSGSKKRKKKMSGSSPN--GGGEYSSPRSPASIS--EHAENNLKQTNQQLHHEQTKQQPE 77 
                  6666555555555555555555555544..444443333333322..355777888999*****9776665 PP

>> PF03261.10  Cyclin-dependent kinase 5 activator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.0   0.00017      0.79      62     130 ..      22      96 ..       2     101 .] 0.58

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00017
   PF03261.10  62 assskkkk.eskkstanl....vs..fkanllesasssykkrviqlnrenlkkskprpsdttlslanlssleeefr 130
                   s+skk+k + + s++n      s    a ++e a ++ k++++ql++e+ k++ p+  +t+l+  + ++++++  
  MMETSP0890-20130614|19185_1  22 RSGSKKRKkKMSGSSPNGggeySSprSPASISEHAENNLKQTNQQLHHEQTKQQ-PEFDETELMADDWQTVRPRRA 96 
                  333322220222233332433222112356777788888888899999888777.998888888888888886644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1276  (0.0933294); expected 273.4 (0.02)
Passed bias filter:                      745  (0.0544909); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.67
# Mc/sec: 361.24
//
Query:       MMETSP0890-20130614|19191_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-25   88.1   0.1    6.3e-25   87.8   0.0    1.0  1  PF12705.2  PD-(D/E)XK nuclease superfamily
     0.0014   18.4   0.0     0.0056   16.5   0.0    1.9  2  PF01930.12 Domain of unknown function DUF83


Domain annotation for each model (and alignments):
>> PF12705.2  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   9.3e-29   6.3e-25      12     235 ..       2     236 ..       1     253 [. 0.78

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 9.3e-29
    PF12705.2  12 rCplrffleyvlrlrepeeseeldaadlGslvHevleefyeglkeeella.edeeleeeleallerleelledeskksllksrl.......akaeklvlaeelsrsgfepvavelefevelgl......egvrlrGriDrvdrdedgrlriiDyKtgkkaksls.........klkydlQlllYllalregapgeplkpaglvylrlrkpeeksklkeelseedleeleeelrelleeiaagelege 235
                  +C+  f ++y+ +l+ep+    ++ +++G lvH+vlee+y + k++++ + +++  +  +++ ++  +ell d    +l+k+r+       + +++++l++ ++ +++++ a e++++++  +      + +++ G+iDr+d +++g+l+++DyKtg++++  +         + +  +Ql++Y+++l+++   + ++++ ++yl  ++++     + +   +dl+++e++l +++++i +  ++++
  MMETSP0890-20130614|19191_1   2 ECEQWFLYRYIWKLPEPP----SPELERGILVHKVLEEIYSKDKKDRTIEtAHSMFRSYWTEERQTKRELLFDM---DLQKEREwglnglrMLDNYFILENPQNMDDDTIFARERWVRCNKVNlpaslpSPLTVLGKIDRLDTTDQGTLCVVDYKTGSAPTQTKyskpfiekmQNQAFFQLFFYAWLLEQEH--FSVSQLKIIYLGGQQGGFI--DQRVSLSDDLKNVEDTLLQTWTKIFH-LISAN 236
                  68878999**********....899****************988888776544455555555555555555432...222333366677775555666666677788999999999997665567788899*************9999***********99888889999844444688*************..9***********9999999..777777999******99999999986.55554 PP

>> PF01930.12  Domain of unknown function DUF83
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.24   1.6e+03      35     131 ..      27      51 ..       3      66 .. 0.50
   2 !   16.5   0.0   8.1e-07    0.0056      55     142 ..     130     238 ..     105     256 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.24
   PF01930.12  35 kllheesyerekkevelsesikiDvvekekeklvvvEvKkskkkeeaaklQllyYlllLekkgieakeGvleypkekkreevelteedreevekaik 131
                   l+h+                                                                          ee+  ++++++ +e+a +
  MMETSP0890-20130614|19191_1  27 ILVHK------------------------------------------------------------------------VLEEIYSKDKKDRTIETAHS 51 
                  33333........................................................................22444444444444444444 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 8.1e-07
   PF01930.12  55 ikiDvve.kekeklvvvEvKkskkk.............eeaaklQllyYlllLekkgieakeGvleypkekk....reevelteedree...vekaikeieeiiesekp 142
                  +kiD ++ +++++l vv++K +++              +++a +Ql +Y++lLe++   +++ ++ y   ++     ++v+l+++ ++    + ++  +i ++i+ ++p
  MMETSP0890-20130614|19191_1 130 GKIDRLDtTDQGTLCVVDYKTGSAPtqtkyskpfiekmQNQAFFQLFFYAWLLEQEHFSVSQLKIIYLGGQQggfiDQRVSLSDDLKNVedtLLQTWTKIFHLISANQP 238
                  7888888556666777777777776677777777777688889*************99999999999988773332355888887765411144445555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 1248.87
//
Query:       MMETSP0890-20130614|19213_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-10   38.3   6.5      0.021   14.6   0.1    3.3  3  PF00397.21 WW domain
  ------ inclusion threshold ------
      0.016   14.5   0.1          3    7.0   0.0    2.1  2  PF13360.1  PQQ-like domain
      0.063   12.2   0.1       0.69    8.8   0.0    1.9  2  PF10994.3  Protein of unknown function (DUF2817)
        1.1    9.5   6.0         12    6.2   0.5    2.4  2  PF05071.11 NADH ubiquinone oxidoreductase subunit NDUFA12


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1     6e-06     0.021       9      28 ..      47      66 ..      43      68 .. 0.80
   2 !   14.2   1.5   7.9e-06     0.027       7      24 ..      78      94 ..      75      99 .. 0.80
   3 !   10.4   0.0   0.00012      0.41      16      28 ..     127     139 .]     112     139 .] 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6e-06
                 E.E-.---EEEEETTT--EES CS
   PF00397.21  9 sddd.dGrvYYyNheTgetqW 28
                 + +d +G +YY++  Tg + W
  MMETSP0890-20130614|19213_1 47 H-EDeNGNTYYVDLHTGASAW 66
                 3.2335***********9988 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.9e-06
                 E.E.E----EEEEETTT- CS
   PF00397.21  7 ersddddGrvYYyNheTg 24
                 er d+  G +YYyN+ Tg
  MMETSP0890-20130614|19213_1 78 ERRDEY-GNIYYYNTHTG 94
                 555455.**********8 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00012
                  EEEEETTT--EES CS
   PF00397.21  16 vYYyNheTgetqW 28 
                  +Y+y+++Tg + W
  MMETSP0890-20130614|19213_1 127 KYFYDTITGHSAW 139
                  8*********988 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00089         3     211     237 ..      41      67 ..      12      74 .. 0.62
   2 ?    5.8   0.0    0.0021       7.1     183     236 ..      84     139 .]      79     139 .] 0.68

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00089
    PF13360.1 211 dgdvlyvvsddgelvaldlktGkvlWk 237
                  +  v+ + +++g+ + +dl tG+++W+
  MMETSP0890-20130614|19213_1  41 EKRVVQHEDENGNTYYVDLHTGASAWS 67 
                  333344444479999999999999996 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0021
    PF13360.1 183 grllaldlatgrrlWskp.issinglpildgdvlyvvsdd.gelvaldlktGkvlW 236
                  g+++ ++++tg  +W+ + i + n l++l +dvl v  dd    +++d  tG ++W
  MMETSP0890-20130614|19213_1  84 GNIYYYNTHTGFSAWTYEeIIGSNDLIQLPEDVLEVKADDgVSKYFYDTITGHSAW 139
                  44445578888877855557777777888888888888553556778888888777 PP

>> PF10994.3  Protein of unknown function (DUF2817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0002      0.69     200     233 ..      44      78 ..      30      87 .. 0.77
   2 ?    4.2   0.0    0.0049        17     196     231 ..      72     107 ..      66     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0002
    PF10994.3 200 lkrhlaaaervaliDlHTGlGpegegeiivss.ee 233
                  + +h  +  +  ++DlHTG+  +  +e++ s+ ee
  MMETSP0890-20130614|19213_1  44 VVQHEDENGNTYYVDLHTGASAWSLEELVESEiEE 78 
                  445557888999************99999888333 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0049
    PF10994.3 196 lreilkrhlaaaervaliDlHTGlGpegegeiivss 231
                  +++ +++   ++ ++ +   HTG   + ++eii s+
  MMETSP0890-20130614|19213_1  72 VESEIEERRDEYGNIYYYNTHTGFSAWTYEEIIGSN 107
                  4556777778999*******************9776 PP

>> PF05071.11  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.005        17       6      17 ..      48      59 ..      41      68 .. 0.84
   2 ?    6.2   0.5    0.0035        12       6      18 ..      80      92 ..      79     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.005
   PF05071.11  6 eDefGNkYYenk 17
                 eDe+GN+YY + 
  MMETSP0890-20130614|19213_1 48 EDENGNTYYVDL 59
                 8********876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0035
   PF05071.11  6 eDefGNkYYenkk 18
                 +De+GN YY n++
  MMETSP0890-20130614|19213_1 80 RDEYGNIYYYNTH 92
                 59*******9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.74
# Mc/sec: 450.13
//
Query:       MMETSP0890-20130614|19223_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.1   0.1    0.00022   20.6   0.1    1.3  1  PF02671.16 Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.6e-08   0.00022       1      36 [.      38      73 ..      38      82 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-H CS
   PF02671.16  1 pekYqeFLeiLhdyskeiisrtelyqeVadLlgghp 36
                 p+++ + L++L++y ++ii+ + l + + +Ll+++ 
  MMETSP0890-20130614|19223_1 38 PDTFAALLHLLRMYDQRIINESVLLSNCFELLQDQT 73
                 89********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.36s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 463.30
//
Query:       MMETSP0890-20130614|19229_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0023   17.3   0.0     0.0026   17.1   0.0    1.0  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0033   16.7   0.1     0.0037   16.6   0.1    1.1  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.8e-07    0.0026      96     179 ..      19     103 ..       9     105 .] 0.80

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.8e-07
                  EEEEEEETTS-.S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEE.EE-STCCHHHHHHH CS
   PF00009.22  96 gavlvvdaveG.vepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkekllekylekgeeevpvv.pgSalkgegidaLl 179
                   +vl++da+ G   +   +++ ++ +l++   +vi+KiD+v   el  i+ ++  k  ++++    +  p++  +Sa++g+gi +L 
  MMETSP0890-20130614|19229_1  19 HVVLLIDARRGlSSARDDQAIDALHRLQISHHIVITKIDLVnPPELAAIIADIFLKQNKNKELA--TCLPILnLVSAKSGFGISELK 103
                  589********5566778999********************88999999999995554444444..356665258999999999885 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.4e-07    0.0037     109     173 ..      12      78 ..       3      83 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.4e-07
                  HHHEEE-EEEEEEETTTH..CHHHHHHHHHHHHHCT-SEEEEE-CCCTTTT..HHHHHHHHHHH-TT CS
   PF02492.14 109 ksdlgldavvtvvdvknl..tegedkpekledqlaaAdlivlnKiDlldaeadlekleedlrklnpe 173
                  ++++ l++vv ++d+++   +  +d++  + + l+ +  iv++KiDl++  ++++ ++++  k n++
  MMETSP0890-20130614|19229_1  12 RDPAILRHVVLLIDARRGlsSARDDQAIDALHRLQISHHIVITKIDLVNPPELAAIIADIFLKQNKN 78 
                  56677899*******8888877788888899999***************998866666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 349.47
//
Query:       MMETSP0890-20130614|19239_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00012   21.4   0.3    0.00015   21.1   0.2    1.1  1  PF10329.4  Region of unknown function (DUF2417)
    0.00015   21.5  15.3    0.00024   20.8  10.6    1.4  1  PF01284.18 Membrane-associating domain
  ------ inclusion threshold ------
      0.039   13.3   6.1       0.84    8.9   0.1    2.2  2  PF14329.1  Domain of unknown function (DUF4386)


Domain annotation for each model (and alignments):
>> PF10329.4  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   3.4e-08   0.00015      94     214 ..      20     149 ..       2     160 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.4e-08
    PF10329.4  94 lgvpskldr.....vlnvvlavLllidlliillvkylrqriglvgiasvlWaalsflinivldryvaegkreeeerl..tgrsetrrtlre..wlsillrtvikllllivvilftltllLralDsslksy 214
                   g++s+l       v+++ la++ l   +++++++++r+ i + g+ ++lWa+ ++++++ +      +  +++e    + r +t r +    ++s +++ ++ + +l+     +l +lL+  D s++ y
  MMETSP0890-20130614|19239_1  20 YGFYSSLTFfvwvgVFGFLLALFILAAKFVTIVTHEIRDAIEIYGTGTMLWACYTAAVAASATSSNLHTTFDQNEGSwcSPRHHTGRLMAGayFCSRMVAAIVIMYILVASYAASLFTLLQEADPSSRGY 149
                  566666654111115677788888888899***********************99988876665543444444443324667666665554114555666666666777777778888888888876666 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  10.6   5.3e-08   0.00024      19     143 ..       4     136 ..       1     137 [. 0.69

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.3e-08
   PF01284.18  19 iilglvasliakldqllgspssalnfavfvavfsflyalallvlylfknkyftsilwplidlivdalaallwlvafialaaglrgvsca..............fesnqgsaslkvrcgsaqaavaFgflavllflasav 143
                  + l  +a++ ++l ++++  +s+l+f+v v+vf+fl+al++l++ +   +++t  ++  i++  ++ +     +a++a  a  ++   +                 +     +   c++  aa++ +++ v+ ++as++
  MMETSP0890-20130614|19239_1   4 FSLMASANTSHHL-NYHYGFYSSLTFFVWVGVFGFLLALFILAAKFV--TIVTHEIRDAIEIYGTGTMLWACYTAAVAASATSSNL--HttfdqnegswcsprH-HTGRLMAGAYFCSRMVAAIVIMYILVASYAASLF 136
                  3344444555455.467777************************664..5666666666666655555555555555555555554..3559887776665541.45555566668********************987 PP

>> PF14329.1  Domain of unknown function (DUF4386)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.1    0.0008       3.7     148     192 ..      17      61 ..       4      80 .. 0.83
   2 ?    8.9   0.1   0.00018      0.84      72     128 ..     103     157 ..     101     172 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0008
    PF14329.1 148 llgylllrsglvPrwlgalgliagllylldsvaeflgpelasgvg 192
                   + y ++ s ++  w+g++g++ +l++l++ ++++ + e+ ++++
  MMETSP0890-20130614|19239_1  17 NYHYGFYSSLTFFVWVGVFGFLLALFILAAKFVTIVTHEIRDAIE 61 
                  56688999999999*******************999999555544 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00018
    PF14329.1  72 pvskglallalafrlleaallavgllsllalllllsqvaaaaafssaqlqalaalll 128
                  ++++ +a ++ + r+++a++++  l++ +a+ l+    +a+  +ss+ + ++a++ +
  MMETSP0890-20130614|19239_1 103 HTGRLMAGAYFCSRMVAAIVIMYILVASYAASLFTLLQEAD--PSSRGYTRTATSSH 157
                  6788899999******9999999999999887766443433..33345555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.80
# Mc/sec: 545.17
//
Query:       MMETSP0890-20130614|19240_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-23   83.3   0.0    1.9e-23   82.8   0.0    1.3  1  PF03269.9 Caenorhabditis protein of unknown function, DUF268
  ------ inclusion threshold ------
      0.022   14.0   0.1      0.052   12.9   0.1    1.6  1  PF06305.6 Protein of unknown function (DUF1049)


Domain annotation for each model (and alignments):
>> PF03269.9  Caenorhabditis protein of unknown function, DUF268
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   2.8e-27   1.9e-23       7     145 ..     178     320 ..     173     352 .] 0.81

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 2.8e-27
    PF03269.9   7 vvGslkpivevsalrng.askiltveynk.leieeefrdrlssilpvdfaknfkkyaeafdfaasfssiehvGlGryGdpldpiGdlrellkikcvlkkGGllflGlPl.GtdalifnakriyGsvrlalll.aGfewidtfs 145
                  v  s+ p+ e++  +   +++i tve+n  +  ++   ++l   +  +++ ++ +    fd a++fs ieh GlGryGdp+dp Gd+  +  i   lk+ G+lfl +P+   d + +  +r+yG+ rl  l+ + f+ i+   
  MMETSP0890-20130614|19240_1 178 VFSSISPWAEMTIWQVFpKTQITTVEFNPpILTHNLSSHKLRIFSHAQIVDEYAQKGPLFDAAVAFSGIEHDGLGRYGDPVDPDGDIAAVHEIALLLKPNGILFLAVPVvEYDDIAYIYHRLYGPNRLLRLFsVDFDLIARVW 320
                  778999****999887636788899999854445555667889999999***********************************************************7357***************8766526899887654 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.6e-06     0.052      34      65 ..      17      48 ..      15      50 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.6e-06
    PF06305.6 34 lglLlsvlfllklrrqlrrlqkqlkklekeld 65
                 + + l ++++l++r +++ l++++k l+k+ +
  MMETSP0890-20130614|19240_1 17 IPWFLVFVVWLQSRAEIKVLRAEVKDLRKANS 48
                 66999***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 992.37
//
Query:       MMETSP0890-20130614|19269_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   30.7   0.0    5.3e-07   29.9   0.0    1.4  1  PF08242.7 Methyltransferase domain
    3.9e-07   30.2   0.0    9.3e-07   29.0   0.0    1.6  2  PF13649.1 Methyltransferase domain
    9.9e-05   21.8   0.1     0.0003   20.2   0.0    1.8  2  PF13847.1 Methyltransferase domain
    0.00013   21.6   0.0    0.00021   20.9   0.0    1.4  1  PF13489.1 Methyltransferase domain
     0.0039   17.6   0.0     0.0087   16.5   0.0    1.6  2  PF12847.2 Methyltransferase domain
  ------ inclusion threshold ------
       0.09   12.6   0.0       0.14   12.0   0.0    1.3  1  PF13659.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.3e-10   5.3e-07       2      89 ..     108     196 ..     107     201 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.3e-10
    PF08242.7   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg..ssfDvvvasnvlhhl..kdirevldni 89 
                  e+GcG+G+ +++l +++  ++++ ++D+ p+ai    + l++r++ + ++++ e++dl ++  g  +s  +v++++vl++l  ++++ +++ i
  MMETSP0890-20130614|19269_1 108 ELGCGVGNGVMPLNKSIpLGVKLRCLDFAPEAI----RLLKARPDFDPSRIQAEVCDLTKDCLGpnGSAHLVTCFFVLSALapETLHHAVQAI 196
                  9****************77**************....888888888999********988877799**************9766666666555 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.1   7.1e+03      34      50 ..      38      54 ..      37      75 .. 0.68
   2 !   29.0   0.0   4.1e-10   9.3e-07       1      95 [.     106     198 ..     106     202 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.1
    PF13649.1 34 eealelakerlsskglk 50
                 ee+l  a+e ++++g +
  MMETSP0890-20130614|19269_1 38 EERLTRARELIEKQGKP 54
                 67777777777776643 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 4.1e-10
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqada.ralpfeegefdlvvcaglslehlspkqlealleeiar 95 
                  i++lGCG G++++ l ++ + g   ++ ++D+ +ea++l k r + +  ++++ + d+ +++  ++g+ +lv+c+   l+ l p+ l  ++++ia+
  MMETSP0890-20130614|19269_1 106 IIELGCGVGNGVMPLNKSIPLG--VKLRCLDFAPEAIRLLKARPDFDPSRIQAEVCDLtKDCLGPNGSAHLVTCFFV-LSALAPETLHHAVQAIAS 198
                  689***************9999..9****************999776668999777774669************988.***********9999986 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.5   1.1e+03      37      65 ..      37      65 ..      36      75 .. 0.75
   2 !   20.2   0.0   1.3e-07    0.0003       2      83 ..     101     181 ..     100     224 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.5
    PF13847.1 37 seeaielAkeraqklgfenveFiqgdiee 65
                 +ee + +A+e+ +k+g    eF + + e+
  MMETSP0890-20130614|19269_1 37 DEERLTRARELIEKQGKPVSEFWKKEYEQ 65
                 58889999999999998877777666665 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.3e-07
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle..esfDlvisnevl 83 
                  ksg ++++lGCG G     l++ +  g k+ ++D+ +eai l k r  +    +++ ++ d+++ ++l     s  lv+++ vl
  MMETSP0890-20130614|19269_1 101 KSGHTIIELGCGVGNGVMPLNKSIPLGVKLRCLDFAPEAIRLLKAR-PDFDPSRIQAEVCDLTK-DCL-GpnGSAHLVTCFFVL 181
                  7999*****************66555******************96.33444477777777777.333.334888888888666 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     9e-08   0.00021       7     101 ..      91     195 ..      63     201 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 9e-08
    PF13489.1   7 reladllerllarlkpggrvLDiGcGtGillellaen...gfdvtgvDpspaaigk.akqaqksqfdeedaae..........pagkfdlivarevlehvpd..peellrq 101
                    +a++le    rlk g +++++GcG G+ +  l ++   g ++   D  p+ai   + + ++++ + ++  e          p+g+++l+++++vl  +    + +++++
  MMETSP0890-20130614|19269_1  91 TVFAKELE----RLKSGHTIIELGCGVGNGVMPLNKSiplGVKLRCLDFAPEAIRLlKARPDFDPSRIQA--EvcdltkdclgPNGSAHLVTCFFVLSALAPetLHHAVQA 195
                  44444444....456899**********988888554455888888999888888775555555553333..13466666777**************99963224444444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.6   8.1e+03      34      49 ..      37      51 ..      27      74 .. 0.65
   2 !   16.5   0.0   3.8e-06    0.0087       2      84 ..     103     184 ..     102     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.6
    PF12847.2 34 seeslelarenaksld 49
                 +ee l +are + +++
  MMETSP0890-20130614|19269_1 37 DEERLTRARELI-EKQ 51
                 556666666655.222 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 3.8e-06
    PF12847.2   2 gkrilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller...fDavllkgltldal 84 
                  g +i++lGcG+G+    l +    g k+  +D+ +e+++l++++       +ri+   +d+   ++ l++     +v++    l+al
  MMETSP0890-20130614|19269_1 103 GHTIIELGCGVGNGVMPLNKsIPLGVKLRCLDFAPEAIRLLKARP--DFDPSRIQAEVCDL--TKDCLGPngsAHLVTCFF-VLSAL 184
                  5689****************9889********************9..34569999999999..555555556677777766.33433 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.2e-05      0.14       1      76 [.     103     177 ..     103     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.2e-05
    PF13659.1   1 gdrvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvt 76 
                  g++++++gcG G+    + +      +l++++  p+a++l +++ +    ++r++  ++dl++   l + gs++lv +
  MMETSP0890-20130614|19269_1 103 GHTIIELGCGVGNGVMPLNKSIplGVKLRCLDFAPEAIRLLKARPDFD--PSRIQAEVCDLTKDC-LGPNGSAHLVTC 177
                  5789*********988888884457***************99998776..568999999998876.688899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:01.00
# Mc/sec: 558.35
//
Query:       MMETSP0890-20130614|19288_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-09   36.9   0.0    5.2e-09   35.7   0.0    1.7  1  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   3.8e-13   5.2e-09       1      80 [.     239     316 ..     239     319 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 3.8e-13
                  EEEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTE.EEEEEEECHSSSCSEE CS
   PF00168.25   1 LkvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelae.leleVkdedrfgkddf 80 
                  L+v++++Ak Lp++  ++++++yvk+ +g++   k+++ ++ n++nP +n +  +   + e+++ l++++  +  f+kd  
  MMETSP0890-20130614|19288_1 239 LRVQILQAKYLPKTTNSKKPSTYVKLAIGKKL-VKAKSDIVANSCNPEFNFSADLA--PIEIHQpLKVQLLTHGLFSKDTK 316
                  89****************************44.59***************999999..77777779999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.97
# Mc/sec: 961.01
//
Query:       MMETSP0890-20130614|19330_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-14   51.4   0.7    1.4e-13   50.6   0.5    1.5  1  PF00498.21 FHA domain


Domain annotation for each model (and alignments):
>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.5     1e-17   1.4e-13       2      68 .]      85     151 ..      84     151 .. 0.93

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1e-17
                  EE-E-TTSSS---TTTS-TTCEEEEEEETCEEEEEEECST--EEETTEECST.TSEEEE-TTEEEEEC CS
   PF00498.21   2 tiGRssdcdivlddpsiSrkHalikydeggkfyleDlgSknGtfvNgqrigk.gepvrLksgdvielG 68 
                  +iGR+s++d+v+++p +Sr+H++i   +++k+ +++ g ++G+ vNg++ig  ge+v+ + g++i++G
  MMETSP0890-20130614|19330_1  85 WIGRESKNDVVISHPGVSRQHCSIGTISQDKVKITNYG-RHGIKVNGKQIGEnGESVEAAIGSTISIG 151
                  7***********************666666******87.************999***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 823.95
//
Query:       MMETSP0890-20130614|19331_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-11   42.9   0.0      5e-11   42.4   0.0    1.2  1  PF00307.26 Calponin homology (CH) domain
  ------ inclusion threshold ------
      0.018   14.2   0.4        2.1    7.6   0.0    4.1  5  PF08515.7  Transforming growth factor beta type I GS-motif
      0.025   14.1   0.0      0.041   13.4   0.0    1.3  1  PF11971.3  CAMSAP CH domain
      0.029   13.8   0.4       0.09   12.3   0.3    1.8  1  PF04624.9  Dec-1 repeat
      0.031   14.6   8.1         28    5.1   0.0    5.9  6  PF04623.7  Adenovirus E1B protein N-terminus


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.8e-14     5e-11       6     104 ..      13     107 ..       8     112 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.8e-14
                  HHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGS.TCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS...-HHHHHTST-HHHHHHHHHHH CS
   PF00307.26   6 rWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlvdledi.skclkesvadsleNlqlalefaeeklgvscvl...tledllysgnkknvlaflaeL 104
                   Wi+ +l++        ++ + l++Gv+L++l++ + p++  + +i + +   + ++++eN++l+l  ++  +g+++      ++dl++++n  +vla++  L
  MMETSP0890-20130614|19331_1  13 AWIEAILKQR--FDANISFADNLKSGVILCELINTINPGT--VPKIyEGQ---MKFKQIENISLFLRGCQA-MGMPKSDcfnPSKDLIEEKNIGMVLACIEGL 107
                  6999999877..34555899*******************6..57884445...56***************9.9**988788799***************9766 PP

>> PF08515.7  Transforming growth factor beta type I GS-motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00076       2.1      12      23 ..     175     186 ..     173     187 .. 0.81
   2 ?   -2.4   0.1         1   2.9e+03      11      23 ..     244     257 ..     243     258 .. 0.80
   3 ?    0.4   0.0      0.14   3.7e+02      13      23 ..     282     292 ..     279     294 .. 0.80
   4 ?   -0.6   0.0      0.28   7.5e+02      11      23 ..     315     327 ..     312     329 .. 0.80
   5 ?   -2.8   0.0       1.4   3.8e+03      11      23 ..     350     363 ..     349     364 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00076
    PF08515.7  12 tSGSGSGlPlLV 23 
                   SGSGSG  +LV
  MMETSP0890-20130614|19331_1 175 YSGSGSGAQTLV 186
                  7******77766 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
    PF08515.7  11 stSGSGS.GlPlLV 23 
                  + SG GS G  +LV
  MMETSP0890-20130614|19331_1 244 TYSGVGSaGESTLV 257
                  67999998877777 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.14
    PF08515.7  13 SGSGSGlPlLV 23 
                  +G GSG ++++
  MMETSP0890-20130614|19331_1 282 AGAGSGEATMI 292
                  7899*999886 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.28
    PF08515.7  11 stSGSGSGlPlLV 23 
                   ++G GSG ++++
  MMETSP0890-20130614|19331_1 315 DSAGKGSGEATMI 327
                  57788***99886 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 1.4
    PF08515.7  11 stSGSGS.GlPlLV 23 
                  +++G GS G ++L+
  MMETSP0890-20130614|19331_1 350 ESAGHGStGEATLI 363
                  67888999999986 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.041      16      67 ..      29      76 ..      21      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-05
    PF11971.3 16 ltrdlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefcee 67
                 ++  l++Gv+L++li+   P  vp   i   e +  +++++N++l+   c+ 
  MMETSP0890-20130614|19331_1 29 FADNLKSGVILCELINTINPGTVPK--IY--EGQMKFKQIENISLFLRGCQA 76
                 677899*****************98..55..7777799********999986 PP

>> PF04624.9  Dec-1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   3.3e-05      0.09       9      21 ..     132     144 ..     124     148 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
    PF04624.9   9 RQWtEeQAKiQqq 21 
                  R W+EeQ K+Q +
  MMETSP0890-20130614|19331_1 132 REWSEEQLKAQKA 144
                  99*********87 PP

>> PF04623.7  Adenovirus E1B protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.11   3.1e+02       1      17 [.     159     175 ..     159     191 .. 0.85
   2 ?    1.0   0.0      0.21   5.6e+02       1      14 [.     194     207 ..     194     214 .. 0.92
   3 ?    0.4   0.0      0.31   8.4e+02       1      14 [.     229     242 ..     229     255 .. 0.86
   4 ?    1.8   0.0      0.11     3e+02       1      14 [.     265     278 ..     265     290 .. 0.89
   5 ?    5.1   0.0      0.01        28       1      19 [.     300     318 ..     300     326 .. 0.90
   6 ?    3.0   0.0     0.047   1.3e+02       1      19 [.     335     353 ..     335     361 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.11
    PF04623.7   1 MerenpseqGlhaGlhs 17 
                  Mer+  s++G+ +G   
  MMETSP0890-20130614|19331_1 159 MERQAVSKGGITFGNEY 175
                  9************9655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.21
    PF04623.7   1 MerenpseqGlhaG 14 
                  Mer+  s++G+ +G
  MMETSP0890-20130614|19331_1 194 MERQAVSKGGITFG 207
                  9***********99 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.31
    PF04623.7   1 MerenpseqGlhaG 14 
                  Mer   s+ G+ +G
  MMETSP0890-20130614|19331_1 229 MERSAVSKSGITFG 242
                  9**********999 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.11
    PF04623.7   1 MerenpseqGlhaG 14 
                  Mer+  +++G+ +G
  MMETSP0890-20130614|19331_1 265 MERREVTKGGITFG 278
                  9***********99 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.01
    PF04623.7   1 MerenpseqGlhaGlhsha 19 
                  Mer   s+ G+ +G+ s +
  MMETSP0890-20130614|19331_1 300 MERAAVSKSGITFGFDSAG 318
                  9**************9865 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.047
    PF04623.7   1 MerenpseqGlhaGlhsha 19 
                  Mer   ++ G+ +G+ s +
  MMETSP0890-20130614|19331_1 335 MERSAVTKSGITFGYESAG 353
                  9*************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 1217.61
//
Query:       MMETSP0890-20130614|19390_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-29  100.2   0.2    1.2e-28   99.7   0.2    1.2  1  PF05871.7 ESCRT-II complex subunit


Domain annotation for each model (and alignments):
>> PF05871.7  ESCRT-II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.2   8.4e-33   1.2e-28       4     125 ..       9     126 ..       6     131 .. 0.95

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 8.4e-33
                  G-GGGCS--SSHHHHHHHHHHHHHHHHHHHHHTT--EEEB-----B-TTEETTTTEE--HHHHHHHHHHHHH---EEEE-----EEEE-SS-HHHHHHHHHHHHHT---TTSEEEHHHHH-- CS
    PF05871.7   4 sfPPffTlQpnsetrkkQlsaWsslilsycrhhkifelsvseaaesslFnnekiqrrlssesikevleelvkkgkaewldkkktkalilwrtleewaslilqwveetgqknsvlTlyelteg 125
                  +fPP++TlQ  +etr++Ql+ W++li+ + r++++ + ++s+a   + F+n +i r+ls+e  + vl++lv +g+ae++ ++ +++ ++ r++ e a  +++w+++++++n+v T+yel ++
  MMETSP0890-20130614|19390_1   9 EFPPLYTLQAVEETREQQLKIWIDLIHFWSRKENQDQFTISNA---KFFENPNIGRKLSQEGERAVLDALVADGRAEIV-NNGQTLQLYPRRPPEVAFELYDWISRNKMLNTVYTIYELYDN 126
                  6**************************************8776...9********************************.666679*********************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.49s 00:00:00.87 Elapsed: 00:00:00.62
# Mc/sec: 626.14
//
Query:       MMETSP0890-20130614|19391_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.037   14.1   0.0    1.5  1  PF08881.5 CVNH domain


Domain annotation for each model (and alignments):
>> PF08881.5  CVNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.7e-06     0.037       4      65 ..      29      95 ..      26     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.7e-06
                 GCEEEEEEETTTTEEEEEEE-----EEEEEEEGGGTEEEXXXXEEE...XXSXGGGGEEEEEEE... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx..x RF
    PF08881.5  4 ssardirldegetmLvaeckrldGsyqeteidLnkiignddGsfrw...gggnfsesardvrla..e 65
                 + +++   d g+++  a +kr  G+ q++e +L+ ++  ++Gs+++   g+ +  e+a++ + +   
  MMETSP0890-20130614|19391_1 29 NRCSENLGDGGRSFRIAALKRCIGQAQKSEKSLDAVVTERYGSLEAltqGDPDVLEQAKNYQHKhpP 95
                 555555555566666899***************************9988666666666666655441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.45s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 935.50
//
Query:       MMETSP0890-20130614|19415_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.7   0.3      0.035   14.4   0.2    1.1  1  PF07743.8 HSCB C-terminal oligomerisation domain
      0.092   12.7   0.1        1.1    9.3   0.0    2.1  2  PF07197.7 Protein of unknown function (DUF1409)


Domain annotation for each model (and alignments):
>> PF07743.8  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   5.1e-06     0.035      28      67 ..       2      41 ..       1      41 [. 0.95

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.1e-06
    PF07743.8 28 aleelkkevearikellaelaealdaedweeAadavrrlk 67
                 + ++lk++++++ + + ++l++++d+ dw+ + + ++rlk
  MMETSP0890-20130614|19415_1  2 NASRLKSMLTEKAASQDQRLSKLIDNCDWQNIGEYLARLK 41
                 5789**********************************98 PP

>> PF07197.7  Protein of unknown function (DUF1409)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.041   2.8e+02      21      39 ..      10      28 ..       2      30 .. 0.67
   2 ?    9.3   0.0   0.00015       1.1      10      32 ..      37      51 ..      34      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.041
    PF07197.7 21 Leeinaelaeelakladlp 39
                 L e  a  +++l kl+d++
  MMETSP0890-20130614|19415_1 10 LTEKAASQDQRLSKLIDNC 28
                 5566666677888888875 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00015
    PF07197.7 10 lVvdCGsIrarLeeinaelaeel 32
                 l        arL+e+n +++ e+
  MMETSP0890-20130614|19415_1 37 L--------ARLKECNGQISREE 51
                 5........9*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.46s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 184.07
//
Query:       MMETSP0890-20130614|19406_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-43  147.4   0.0    5.5e-29  100.4   0.0    2.2  2  PF01077.17 Nitrite and sulphite reductase 4Fe-4S domain
      1e-24   85.8   0.1    1.5e-12   46.8   0.0    2.6  2  PF03460.12 Nitrite/Sulfite reductase ferredoxin-like half domain


Domain annotation for each model (and alignments):
>> PF01077.17  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   8.1e-33   5.5e-29       2     155 ..     161     326 ..     160     328 .. 0.95
   2 !   44.9   0.0   9.5e-16   6.5e-12       7     101 ..     437     535 ..     432     556 .. 0.83

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 8.1e-33
                  ---EEEEE--TT--SBSS-SS-THHHHHHHH........HHHHHHHCGSSSSS-EEEEE-SSTT--S-GGGSSEEEE----S------EEEE-----SSSS--EEEEEECE----..HHHHHHHHHHHHHH....HCSGCC-SHHHHHHH-.--HHHHHHHHHTTSC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   PF01077.17   2 ganlrnvklcpgaglceeallDttelakale........deledeygrtalPrKfKiavsgcpnncvaveanDigivgvekdeieigfnilvGGkagrthgakktlarlgfvpee..dvievveaivevyr..gdrknrkkeRlkylierl.Glekfrekveeelgk 155
                  ++n+rn++ +p ag+++++llDt+++++al+         +   +++  +lPrKf+iavs  p + +++++nD+++ + +++++++gfn++vGG ++++++  +  +   ++p++  +v++v  ai+e++r  g r +r+k+R+++l+e   G + f+ k+ e+l++
  MMETSP0890-20130614|19406_1 161 MDNVRNIVGSPLAGIDQDELLDTRPYCNALNdlitidpdTNKRGNPKWGNLPRKFNIAVSSSPADYAHAKINDLAFEAATHNDGNLGFNVVVGGYFSARRSTHAIDLG-LWIPASvsNVLDVSTAILEIFRdeGFRGDRQKARFMWLVEACgGADAFKLKLLEKLKN 326
                  89**********************************9998999999999*********************************************************98.8*****977********************************97789999888887765 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 9.5e-16
                  EEE--TT--SBSS-SS-THHHHHHHHHHHHHHHCGSSSSS-EEEEE-SSTT--S-GGGSSEEEE----S----.........--EEEE-----SSSS--EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx RF
   PF01077.17   7 nvklcpgaglceeallDttelakaledeledeygrtalPrKfKiavsgcpnncvaveanDigivgvekdeiei.........gfnilvGGkagrthgakktlar 101
                  n+++c+g+++c+ a+++t+ +a+++ ++l d +g       +++ v+gcpn+c++v++ Dig++g    +i           g+n+++GG  g + +   + + 
  MMETSP0890-20130614|19406_1 437 NTVSCTGSQFCPLAIIETKAFATRISQRLDDALGM-----PLRLHVTGCPNSCGQVQMADIGLMGAPARRIDPetgkakavpGCNVFLGGTIGHNSKLSLEPVL 535
                  789***********************777766664.....39************************99887779*******************99887766654 PP

>> PF03460.12  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0     4e-13   2.7e-09       4      66 ..      82     149 ..      79     152 .. 0.81
   2 !   46.8   0.0   2.2e-16   1.5e-12      12      56 ..     368     412 ..     359     415 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 4e-13
   PF03460.12   4 kdgkgyymvrlrvpnGritaeqlraladiae....kygs..geirlTtrQnlqlhgvpeedleeileeL 66 
                  k ++++ m+rlr pnG++ ++ lr  ad  e    + g     +++TtrQnlql+g++ +++++++++L
  MMETSP0890-20130614|19406_1  82 KVPGTF-MMRLRKPNGILRSDALRLYADALEdaaiTVGQetAVADITTRQNLQLRGLTLDQAADLIAKL 149
                  555566.**************88888888863333444344678*********************9987 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 2.2e-16
   PF03460.12  12 vrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpe 56 
                  v+++vp Gr++ e+lralad ae+++  e+rlT +Qn+++++v+ 
  MMETSP0890-20130614|19406_1 368 VGMHVPVGRLSLEELRALADAAEQHSGSELRLTVEQNVIFPNVKN 412
                  99*****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.82
# Mc/sec: 1648.23
//
Query:       MMETSP0890-20130614|19432_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   12.9   2.3      0.076   12.8   1.6    1.0  1  PF05267.7 Protein of unknown function (DUF725)


Domain annotation for each model (and alignments):
>> PF05267.7  Protein of unknown function (DUF725)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.6   5.5e-06     0.076      33      73 ..      11      54 ..       8      56 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.5e-06
    PF05267.7 33 kaadneteqiledaaeerkaiqasaeslcsal...taCdslnda 73
                 +a++ne+  +++d++++ +a+q+s e  cs     ++C+s++++
  MMETSP0890-20130614|19432_1 11 SATENERDDVDDDTESSDDAYQSSQEMDCSVHstqDTCQSNDAT 54
                 57899************************976444789999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP0890-20130614|19428_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-05   22.4   8.6    7.2e-05   22.4   6.0    1.7  2  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   6.0   5.2e-09   7.2e-05       1      40 []     401     437 ..     401     437 .. 0.95
   2 ?   -4.1   0.2         1   1.4e+04      27      36 ..     504     513 ..     504     513 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 5.2e-09
                  -TTT--.B----EE----S--EESSHHHHHHHHHHHTTTH CS
   PF01753.13   1 CavCgkaealkllrCsgCksvkYCskeCQradwkeHkkeC 40 
                  Ca+Cg   + +ll C +Ck ++YC++ C+ a++k H+++C
  MMETSP0890-20130614|19428_1 401 CAQCGG--QGRLLIC-QCKLAMYCNTMCRDAHRKLHRPDC 437
                  ******..77778**.8*********************** PP

  == domain 2    score: -4.1 bits;  conditional E-value: 1
                  HHHHHHHHHH CS
   PF01753.13  27 eCQradwkeH 36 
                  +CQ +  ++H
  MMETSP0890-20130614|19428_1 504 DCQGQKYRTH 513
                  5999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.41s 00:00:01.40 Elapsed: 00:00:00.93
# Mc/sec: 1759.91
//
Query:       MMETSP0890-20130614|19457_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       134  (0.00980105); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|19462_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-21   75.3   0.1    6.8e-20   71.0   0.0    2.3  2  PF00365.15 Phosphofructokinase
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.022   14.7   0.0    1.5  1  PF03652.10 Uncharacterised protein family (UPF0081)


Domain annotation for each model (and alignments):
>> PF00365.15  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0     1e-23   6.8e-20       2     183 ..      15     219 ..      14     241 .. 0.82
   2 ?    1.9   0.0     0.011        77     244     278 ..     324     358 ..     270     362 .. 0.80

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 1e-23
                  EE--EE--------HHHHHHHHHHH..HC---EE-------------...----B-GGGGTT-TT----TT-B---CGGC..S.......----...----HHHHH-----EEEE---------HHHH.H--.....--EE-----TT---TT-SS----HHHHHHHHHHHHHHHHHHHHTT-EEEE.EE-------HHHH---- CS
   PF00365.15   2 kiavltsGGDapGmnaavravvrsa..iakGlevfvireGyeGlveg...eikklevesvsdiiqrgGtilgsarlkefk..e.......eegr...kkaiekLkkagidalvviGGDGsltGakllteehg.....lnivglvGtiDnDlsgtDatiGfdtalervveaiDkirdtasshervfvv.evmGrhcgdlalvagia 183
                  kia+lt+GG ap + +av  ++ +   i   +e++  ++Gy+Gl+ g   +++++ +e+++ +  +gG  +g +r+k  +  +       +eg+   + a+++L+k g++ l  iGGD + t a ++ +  +     +++vgl+ tiDnD++     +G+ ta e   +   ++ + +s+  r+ ++ e mGr cg+l+ +++ a
  MMETSP0890-20130614|19462_1  15 KIALLTAGGLAPCLSSAVGFLIEKYtlIDASIEIICYKSGYKGLLLGdsiSVTPAVREQATALQLHGGSPIGNSRVKLTNvdDcikrglvQEGQiplEIAAQQLQKDGVTVLHTIGGDDTNTQAAQVAKYLNehnynITVVGLPKTIDNDVYPIKQSLGAWTAAEEGAKFFFNLVNEMSANPRMLIIhECMGRDCGYLTAATAQA 219
                  7******************999764225678999999********99877788899999****************985431111111222445533336899*****************999887766543344466999*******************************************998769*********9887765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.011
                  ---EEEEE---TT------HHHHHHHHH---HHHH CS
   PF00365.15 244 gldtrvtvLGhvqrGGtptafDrilasrlgaeave 278
                    ++ v   G++ r  ++ a Dr l  r  + av+
  MMETSP0890-20130614|19462_1 324 ADKVLVQKSGYMARSAAANAADRALIERCCQLAVQ 358
                  3346677789******************9999997 PP

>> PF03652.10  Uncharacterised protein family (UPF0081)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.3e-06     0.022      25      72 ..     123     170 ..     112     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.3e-06
   PF03652.10  25 aspletierkskkkdleelkelvkeeeveeiVvGlPlnmdgseseqak 72 
                   + l+ti  +++++++++++++++e++ +  VvGlP+++d++  +  +
  MMETSP0890-20130614|19462_1 123 VTVLHTIGGDDTNTQAAQVAKYLNEHNYNITVVGLPKTIDNDVYPIKQ 170
                  566888887778999***********************9998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       453  (0.0331334); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.92
# Mc/sec: 1067.94
//
Query:       MMETSP0890-20130614|19481_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.8   3.0       0.13   11.7   2.1    1.1  1  PF07344.6  Amastin surface glycoprotein
       0.35   11.1   4.3       0.54   10.5   3.0    1.4  1  PF02394.11 Interleukin-1 propeptide
       0.62    8.4   6.9       0.74    8.2   4.8    1.0  1  PF03071.10 GNT-I family


Domain annotation for each model (and alignments):
>> PF07344.6  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.1   2.9e-05      0.13      61     122 ..      13      74 ..       2      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
    PF07344.6  61 rfraaeafsIisilvllaalllgvllllccsslkwvclllnivsvvtllivwalmvavyykr 122
                  + ++ + +++is ++ +  +++  +   ++ ++++v+++++ v++vt  i  +++v+++++ 
  MMETSP0890-20130614|19481_1  13 KVKIDQHVNVISQIMDVEVIVINSAVNSSIDIMMVVVMVISKVAAVTNAINVVVVVDIINNM 74 
                  566778899*************************************************9954 PP

>> PF02394.11  Interleukin-1 propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00012      0.54      35     101 ..      26      94 ..       3      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
   PF02394.11  35 fqdldlgsleeltdesiqlqiseq.sknk.lsfrqavvvvvAveklkkrrlslsqafqddDleailsei 101
                  + d+++   ++ ++ si++ +      +k   + +a+ vvv v+++ ++++   q+f+d D+e+++++i
  MMETSP0890-20130614|19481_1  26 IMDVEVIVINSAVNSSIDIMMVVVmVISKvAAVTNAINVVVVVDIINNMKIFTVQVFNDADIENVTTNI 94 
                  55666666666667777765444303444668899999***************************9998 PP

>> PF03071.10  GNT-I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.8   0.00016      0.74      57     157 ..       9     107 ..       2     110 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00016
   PF03071.10  57 ekeklerldeelsklralvktlekkeiakltlkeakavipvlvlaCnradavrktvekllkyr..psaekfPiivsqdcdneevkkevksygdkvtyikhldl 157
                  e  ++ ++d++++ + +++ ++e   i++  +++  +++ v+v+  ++  av ++++ ++        + f + v  d+d e+v  ++++   +v  ik+ld+
  MMETSP0890-20130614|19481_1   9 ELMMKVKIDQHVNVI-SQIMDVEVIVINS-AVNSSIDIMMVVVMVISKVAAVTNAINVVVVVDiiNNMKIFTVQVFNDADIENVTTNINKN--SVLSIKKLDS 107
                  444455677777744.4555777666655.559999*********************9988775577889******************996..8999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1273  (0.09311); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 362.69
//
Query:       MMETSP0890-20130614|19479_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-08   33.1   1.0    0.00089   18.9   0.0    4.6  5  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
        4.1    6.9  10.0          6    6.3   7.0    1.2  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.34   2.3e+03      11      30 ..      21      40 ..      19      47 .. 0.80
   2 ?   -0.0   0.0      0.12   8.4e+02      11      29 ..      46      63 ..      38      73 .. 0.72
   3 !    6.7   0.0   0.00089       6.1      26      39 .]     117     130 ..     105     130 .. 0.89
   4 ?    1.2   0.0      0.05   3.4e+02      24      39 .]     152     167 ..     137     167 .. 0.83
   5 !   18.9   0.0   1.3e-07   0.00089       5      39 .]     268     306 ..     265     306 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.34
                 SSSEEEEEEESSSTEEEEEE CS
   PF00400.27 11 tspVtcvafspdgpllasgS 30
                 t+ ++ ++ s   ++las S
  MMETSP0890-20130614|19479_1 21 TGLIRVIDASSGNTRLASTS 40
                 56688888889999999998 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.12
                 SSSEEEEEEESSSTEEEEE CS
   PF00400.27 11 tspVtcvafspdgpllasg 29
                 + +V c+ +  d + + ++
  MMETSP0890-20130614|19479_1 46 SRGVLCLTWGND-RKFYCA 63
                 6789*****999.655555 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00089
                  EEEEETTSEEEEEE CS
   PF00400.27  26 lasgSrDgtirlWd 39 
                  ++s+S+Dg i +W+
  MMETSP0890-20130614|19479_1 117 VLSCSDDGRIEMWN 130
                  79***********7 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.05
                  TEEEEEETTSEEEEEE CS
   PF00400.27  24 pllasgSrDgtirlWd 39 
                  ++l+ g+r + + lW+
  MMETSP0890-20130614|19479_1 152 NHLIVGGREHELSLWN 167
                  69*************7 PP

  == domain 5    score: 18.9 bits;  conditional E-value: 1.3e-07
                  EEEESSSSSEEEEEEESS....STEEEEEETTSEEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspd....gpllasgSrDgtirlWd 39 
                  a + g  ++V+++a +p+      l+a +S D+ ++lWd
  MMETSP0890-20130614|19479_1 268 ARYPGPAGSVRALAHHPSpklsNDLFAAASLDRHVYLWD 306
                  5678999*******************************9 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.0   0.00088         6     110     150 ..     343     382 ..     314     386 .] 0.70

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00088
    PF04889.7 110 rkkkleeareidaddsdkseeesdesdddsdddddeDetae 150
                  +   ++++ ++d d+sd++++es+ +ddd d+ d++D+ +e
  MMETSP0890-20130614|19479_1 343 KDVLSSDDVNLDIDESDQDDSESEREDDD-DSADNDDDSEE 382
                  44456778888888877777554444444.44566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 1075.57
//
Query:       MMETSP0890-20130614|19487_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 689.76
//
Query:       MMETSP0890-20130614|19539_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-47  161.4   1.0      2e-47  160.7   0.7    1.3  1  PF09764.4  N-terminal glutamine amidase
  ------ inclusion threshold ------
       0.32   10.8   3.3       0.92    9.3   2.3    1.7  1  PF10985.3  Protein of unknown function (DUF2805)
        2.6    7.1  13.5        3.5    6.7   9.3    1.2  1  PF04652.11 Vta1 like
        9.8    6.3  10.8       0.14   12.2   2.1    1.9  2  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF09764.4  N-terminal glutamine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.7   5.8e-51     2e-47       1     179 [.      66     250 ..      66     255 .. 0.89

  Alignments for each domain:
  == domain 1    score: 160.7 bits;  conditional E-value: 5.8e-51
    PF09764.4   1 kyascYCEENvyklveel.....keekesaleelfavfisNeaksvplwkqkaseekdi.vlWDYHVillvraekegkslvyDlDstldlpsdlkkYveealrldkalkeeyrrkfRvieadkylsefaSDRsHmkkedgs.ylkppPeyplikgsesavrrnleeylsmkksdeilgvvideeel 179
                  +y+scYCEENv+ l+++l     ++ +++++ e +a+fisN  ++ p+w q+++ ++d   lWDYHV+l + +++ +k+++ DlDstl l s++  Yv+ al + ++l ++++  +R+++ad y+ +faSDR+Hmkk++gs y +ppP+y++i+g  + +++nl++y+   ++d+    vid ++l
  MMETSP0890-20130614|19539_1  66 QYTSCYCEENVWWLCRKLisyqeNKVEDADDWESYAMFISNADRRCPVWFQRSALDDDApCLWDYHVVLFALSRSAKKTVIIDLDSTLGLVSEALVYVNRALAPARRLPNQFHPVLRLVRADMYMCFFASDRRHMKKTNGSdYSAPPPRYNCIRGPYADADHNLQDYWPDIPDDD-DQDVIDANDL 250
                  6****************966432223334445679*******************998877***********9999999************************************************************9965**************************9888888.6666666655 PP

>> PF10985.3  Protein of unknown function (DUF2805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.3   0.00027      0.92      35      57 ..      16      38 ..      14      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00027
    PF10985.3 35 keLkpssFklWrkRvsgrktKhk 57
                 +++k +s+k+W+kR +++k+K  
  MMETSP0890-20130614|19539_1 16 QRMKGGSWKVWQKRNKKKKKKDV 38
                 689************88888865 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   9.3     0.001       3.5     205     320 ..     288     402 ..     223     425 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.001
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX......................................................XXXXXX CS
   PF04652.11 205 psdplsaedsdssapgldadeasaspseapssspgvpsfp.spdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss.ppsteapssppvqapsapakp.slssakPtaq 320
                   s+++s++++   a++ d    +++p+++  +sp+v++ +   d++++ nkd ++ + P    ++++ s ++fP  s e ++  s+  ps  +p+sp    + +++k+   + ++P  +
  MMETSP0890-20130614|19539_1 288 ESAGASTDQQLAGANSVDINHHPPPPESNRYKSPSVSNDEeHNDDDKNDNKDDDDDDLP----SPQTRSVRFFPLISDELTSTTSNhNPSGRNPPSPMKDKSISSSKNtTTNRNRPHSP 402
                  23333334555555555555555555555555555555543333444444455555555....44444555555444422222222222222222222211111111111111122221 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.7       3.4   1.2e+04      26      35 ..     235     244 ..     223     254 .. 0.51
   2 ?   12.2   2.1   4.1e-05      0.14      21      63 ..     325     366 ..     314     371 .. 0.57

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.4
    PF09026.5  26 deededeede 35 
                  d  d+d++d 
  MMETSP0890-20130614|19539_1 235 DIPDDDDQDV 244
                  3333443333 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.1e-05
    PF09026.5  21 edeeedeededeedeeeddevpvpsfgeamayfamvkryltss 63 
                  +dee +++d++++ +++dd++p p    ++ +f ++   lts+
  MMETSP0890-20130614|19539_1 325 NDEEHNDDDKNDNKDDDDDDLPSPQ-TRSVRFFPLISDELTST 366
                  2232222233333444556677775.46778888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       790  (0.0577823); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:01.41
# Mc/sec: 725.71
//
Query:       MMETSP0890-20130614|19551_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-19   68.1   0.0    5.3e-19   68.0   0.0    1.0  1  PF13306.1  Leucine rich repeats (6 copies)
    5.3e-07   29.1   0.0    1.1e-06   28.1   0.0    1.5  1  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.065   13.3   0.4        1.7    8.8   0.1    2.3  2  PF05593.9  RHS Repeat
        1.1    9.1   5.4         19    5.2   0.1    3.0  3  PF05345.7  Putative Ig domain


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   1.5e-22   5.3e-19      13      76 ..       1      64 []       1      64 [] 0.90

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 1.5e-22
    PF13306.1 13 nltsitipssvtsIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigena 76
                 +lt++++p+ +t+Ig  aF+nc+sl+++tlp  lt+ig++aF  c+slt++++p  lt+ig++a
  MMETSP0890-20130614|19551_1  1 SLTQLSLPTGLTTIGRGAFHNCTSLTEVTLPAGLTTIGRNAFIRCTSLTQLKLPAGLTTIGNYA 64
                 5899999999999999999999999999999999999999999999999999999999999986 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.3e-10   1.1e-06       3      56 ..       2      53 ..       1      56 [. 0.94

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.3e-10
    PF13855.1  3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnL 56
                 L+ L L    l++i+ gaF+++++L++  L    l++i ++af  ++sL++L L
  MMETSP0890-20130614|19551_1  2 LTQLSLPTG-LTTIGRGAFHNCTSLTEVTLP-AGLTTIGRNAFIRCTSLTQLKL 53
                 788888888.*********************.********************98 PP

>> PF05593.9  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00049       1.7       7      38 .]       2      35 ..       2      35 .. 0.77
   2 ?    8.7   0.0   0.00051       1.7       7      32 ..      25      49 ..      25      62 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00049
    PF05593.9  7 LtevtdatGrvt.tYtYDaaGr...lTaltdpdGtt 38
                 Lt+ + +tG +t      a+++   lT++t p+G t
  MMETSP0890-20130614|19551_1  2 LTQLSLPTGLTTiG--RGAFHNctsLTEVTLPAGLT 35
                 7888899*****54..99****55555668888865 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00051
    PF05593.9  7 LtevtdatGrvt.tYtYDaaGrlTalt 32
                 Ltevt + G +t     +a+ r T+lt
  MMETSP0890-20130614|19551_1 25 LTEVTLPAGLTTiG--RNAFIRCTSLT 49
                 8***********54..99999977765 PP

>> PF05345.7  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.041   1.4e+02      11      17 ..       6      12 ..       1      19 [. 0.88
   2 ?    5.2   0.1    0.0057        19       8      17 ..      26      35 ..      13      36 .. 0.84
   3 ?    3.5   0.0     0.019        65      11      17 ..      52      58 ..      41      59 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.041
    PF05345.7 11 gLPsGLt 17
                 +LP+GLt
  MMETSP0890-20130614|19551_1  6 SLPTGLT 12
                 8*****8 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0057
    PF05345.7  8 gsngLPsGLt 17
                 +  +LP+GLt
  MMETSP0890-20130614|19551_1 26 TEVTLPAGLT 35
                 6789*****8 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.019
    PF05345.7 11 gLPsGLt 17
                 +LP+GLt
  MMETSP0890-20130614|19551_1 52 KLPAGLT 58
                 8*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:01.06
# Mc/sec: 144.69
//
Query:       MMETSP0890-20130614|19569_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.0   0.0      0.037   13.4   0.0    1.4  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-06     0.037      15      65 ..      37      97 ..      23     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.7e-06
                 ETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE.............EE.EEEEEGGGEEE CS
   PF01423.17 15 lkngreveGtLkafDkfmNlvLrdvtetwkrkkknk...........relgqiliRGenivl 65
                 l + r ++G+ +  D   N +   ++et++ + + +           r+lg++++ G + v 
  MMETSP0890-20130614|19569_1 37 LDDKRVIVGIFQCMDSDRNFIVAKAEETRRLPVD-YgldetilekrtRRLGLVMVPGKHLVR 97
                 67899***********************665555.45*******************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.90
# Mc/sec: 311.53
//
Query:       MMETSP0890-20130614|19578_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 757.11
//
Query:       MMETSP0890-20130614|19580_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-82  275.5  10.7    4.6e-82  275.3   7.4    1.0  1  PF04733.9  Coatomer epsilon subunit
    6.2e-06   25.4   4.7     0.0088   15.4   0.1    5.3  6  PF00515.23 Tetratricopeptide repeat
    1.2e-05   24.7   6.9     0.0013   18.1   0.9    4.1  5  PF13414.1  TPR repeat
    0.00013   22.3   1.0     0.0032   17.9   0.0    3.3  3  PF13432.1  Tetratricopeptide repeat
      0.001   18.7   0.2      0.072   12.9   0.0    3.0  2  PF13374.1  Tetratricopeptide repeat
     0.0016   18.2   6.8      0.015   15.0   0.2    4.6  5  PF13424.1  Tetratricopeptide repeat
     0.0028   18.0   3.5       0.38   11.4   0.0    4.9  7  PF13428.1  Tetratricopeptide repeat
     0.0058   16.2   1.2       0.28   10.9   0.1    4.0  4  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.015   15.0   0.1    5.6  7  PF07719.12 Tetratricopeptide repeat
       0.11   12.5   0.3        2.6    8.1   0.0    2.5  2  PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
       0.19   11.4   0.2       0.19   11.4   0.2    4.8  6  PF13181.1  Tetratricopeptide repeat
       0.72    9.7   4.8       0.93    9.3   1.6    2.4  2  PF12923.2  Ribosomal RNA-processing protein 7 (RRP7)


Domain annotation for each model (and alignments):
>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.3   7.4   4.1e-85   4.6e-82       2     289 ..       5     294 ..       4     295 .. 0.96

  Alignments for each domain:
  == domain 1    score: 275.3 bits;  conditional E-value: 4.1e-85
                  X-TTHHHHHHHH---HHHHHHHHH.S---SHHHHHHHHHHHHHHHHHTT----HHHHS-TTS-HHHHHHHHHHHHHH-ST.THHHHHHHHHHHHHS----S-.HHHHHHHHHHHHHTT-HHHHHHHHT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHS---HHHH---HHHHHH---HHHH---HHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHH CS
    PF04733.9   2 sdeLfdvrnefYlGaYqkainead.vaslseeekeerdvylyrsylAlgsaqiviseIkesaatelqAvrllaeylnsps.rkeeilaelkeeladseiesn.evlrllaaivflkegdfddalkllkksenLeavAlkvqillklhrvdlAekelkkmqdidedatltQLAqawvklavggekiqdAyyifqelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnekeaeFdrlvlqf 289
                  +deL+ +rn f+lG+Yq ai e++ +  +++e k e+d y yrsy+ lg++ +v  eI+++a+ +lqAv+lla+yl+ p+ +ke++l++ +e++ + ++  + + l+++ ai++ +e++ ++a+k++k+  nLe +A   q+ +k+ r d+A++  kkmq+ided tltQL  awv+la+g ek ++A y ++el +k+     llng Av++++l++ye+Ae+ L +a++k   ++etL+Nl+ +  hl+k++ev++r++sqlk ++p+h+ v+++ + e++Fd  ++++
  MMETSP0890-20130614|19580_1   5 PDELYTLRNRFWLGNYQMAIAESNnLRLMNDELKGEKDEYTYRSYIGLGQYDLVEREIDDDAPMNLQAVKLLAKYLKDPAkNKEAALSQCDEWMEKYANRADqSSLQMIIAIIYDRENKDEEAFKAIKAQSNLEQMAFWAQLCIKIYRNDVAQQYYKKMQQIDEDSTLTQLVGAWVHLAQGDEKAKEAAYTYEELIDKFGASISLLNGVAVAHMQLKEYEDAEKYLMQAMEKGD-NPETLANLISTYYHLNKPEEVTNRYISQLKSQYPTHPHVQKIIQLENDFDLNANKY 294
                  79*********************99999**************************************************97368999********887665441579*****************************************************************************************************************************976.59************************************************877665 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.15   1.7e+02      12      22 ..      15      25 ..      14      25 .. 0.86
   2 ?   -2.8   0.0       4.5   5.1e+03      11      18 ..      49      56 ..      48      57 .. 0.80
   3 ?   -1.5   0.0       1.7   1.9e+03       7      23 ..     114     130 ..     113     132 .. 0.82
   4 ?    0.8   0.0      0.34   3.9e+02      20      33 ..     156     169 ..     156     170 .. 0.82
   5 !   15.4   0.1   7.8e-06    0.0088       4      29 ..     210     235 ..     207     236 .. 0.89
   6 ?    3.7   0.0     0.039        44       2      19 ..     241     258 ..     240     259 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.15
                 HHTT-HHHHHH CS
   PF00515.23 12 lklgkydeAle 22
                 + lg+y+ A++
  MMETSP0890-20130614|19580_1 15 FWLGNYQMAIA 25
                 679******95 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.5
                 HHHTT-HH CS
   PF00515.23 11 ylklgkyd 18
                 y  lg+yd
  MMETSP0890-20130614|19580_1 49 YIGLGQYD 56
                 77899998 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.7
                  HHHHHHHTT-HHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAley 23 
                  ++ +y + +k +eA ++
  MMETSP0890-20130614|19580_1 114 IAIIYDRENKDEEAFKA 130
                  58899999999999765 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.34
                  HHHHHHHHHHHHTT CS
   PF00515.23  20 AleyyekALelnPn 33 
                  A +yy+k  +++++
  MMETSP0890-20130614|19580_1 156 AQQYYKKMQQIDED 169
                  66899999999986 PP

  == domain 5    score: 15.4 bits;  conditional E-value: 7.8e-06
                  HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekALe 29 
                  l++ ++a+++l++y++A++y  +A e
  MMETSP0890-20130614|19580_1 210 LNGVAVAHMQLKEYEDAEKYLMQAME 235
                  78889****************99965 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHTT-HHH CS
   PF00515.23   2 kalynlGnaylklgkyde 19 
                  ++l nl  +y++l+k++e
  MMETSP0890-20130614|19580_1 241 ETLANLISTYYHLNKPEE 258
                  7899***********998 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   1.5e+03      14      25 ..      15      26 ..      13      30 .. 0.82
   2 ?    0.5   0.6      0.37   4.2e+02      18      60 ..      86     130 ..      71     135 .. 0.71
   3 ?    1.3   0.2      0.21   2.4e+02      22      61 ..     156     196 ..     151     202 .. 0.70
   4 !   18.1   0.9   1.2e-06    0.0013      17      66 ..     187     235 ..     180     237 .. 0.91
   5 !   17.3   0.3   2.2e-06    0.0025      10      56 ..     214     258 ..     209     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.3
    PF13414.1 14 fkegdydeAiea 25
                 f++g+y+ Ai++
  MMETSP0890-20130614|19580_1 15 FWLGNYQMAIAE 26
                 789999999975 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.37
    PF13414.1  18 dydeAieayekAleldpnnae...lyynlAlaylklgkdyeeAled 60 
                  + + A+ ++++ +e   n a+   l   +A +y + +k +eeA ++
  MMETSP0890-20130614|19580_1  86 NKEAALSQCDEWMEKYANRADqssLQMIIAIIYDRENK-DEEAFKA 130
                  55677777777777665555555577778888888764.5888765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.21
    PF13414.1  22 AieayekAleldpnnaelyynlAlaylklgk.dyeeAledy 61 
                  A ++y+k  ++d+++    +  A ++l +g+ + +eA+  y
  MMETSP0890-20130614|19580_1 156 AQQYYKKMQQIDEDSTLTQLVGAWVHLAQGDeKAKEAAYTY 196
                  77888888888888888888888888888853344444444 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 1.2e-06
    PF13414.1  17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                   + +eA   ye+ ++    + +l+++ A a+++l  +ye+A +++ +A+e
  MMETSP0890-20130614|19580_1 187 EKAKEAAYTYEELIDKFGASISLLNGVAVAHMQLK-EYEDAEKYLMQAME 235
                  5789*****************************97.7***********97 PP

  == domain 5    score: 17.3 bits;  conditional E-value: 2.2e-06
    PF13414.1  10 GnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyee 56 
                  + a++++++y++A++++ +A+e   +n+e ++nl  +y++l+ ++ee
  MMETSP0890-20130614|19580_1 214 AVAHMQLKEYEDAEKYLMQAMEKG-DNPETLANLISTYYHLN-KPEE 258
                  77899*****************88.59*************98.6887 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2       1.3   1.5e+03      15      35 ..      71      91 ..      70      93 .. 0.86
   2 ?   -1.1   0.0       2.5   2.9e+03      38      57 ..     178     199 ..     173     207 .. 0.62
   3 !   17.9   0.0   2.8e-06    0.0032       4      65 .]     214     275 ..     211     275 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.3
    PF13432.1 15 eAlaaleaalalaPeaaeall 35
                 +A+++l ++l+++ ++ ea l
  MMETSP0890-20130614|19580_1 71 QAVKLLAKYLKDPAKNKEAAL 91
                 699999999999999999976 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.5
    PF13432.1  38 aeallrl..grldeAaallraa 57 
                  a+++l++   + +eAa  ++++
  MMETSP0890-20130614|19580_1 178 AWVHLAQgdEKAKEAAYTYEEL 199
                  6777777333444444555554 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 2.8e-06
    PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.allraalalaPddp 65 
                  A a +++++y++A+++l +a+++   ++e l +l  ++++l++++e   +++ ++ + +P +p
  MMETSP0890-20130614|19580_1 214 AVAHMQLKEYEDAEKYLMQAMEKGD-NPETLANLISTYYHLNKPEEVTnRYISQLKSQYPTHP 275
                  78999************77777774.999*******************999999999888876 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.3e-05     0.072       4      30 ..     209     235 ..     207     236 .. 0.91
   2 ?    2.3   0.0      0.13   1.5e+02       4      21 ..     242     259 ..     241     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.3e-05
    PF13374.1   4 alnnLAlalrargryeeAlaleeeala 30 
                   ln +A+a++++++ye+A++++ +a++
  MMETSP0890-20130614|19580_1 209 LLNGVAVAHMQLKEYEDAEKYLMQAME 235
                  699*******************99975 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.13
    PF13374.1   4 alnnLAlalrargryeeA 21 
                  +l nL  +++ +++ ee 
  MMETSP0890-20130614|19580_1 242 TLANLISTYYHLNKPEEV 259
                  899***********9996 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.35     4e+02      17      54 ..      16      54 ..      10      60 .. 0.81
   2 ?   -0.9   0.0       1.3   1.5e+03      52      67 ..     114     129 ..     102     133 .. 0.76
   3 ?    3.9   0.1      0.04        45      53      77 ..     144     168 ..     143     169 .. 0.86
   4 !   13.7   0.9   3.6e-05     0.041      34      74 ..     195     235 ..     181     239 .. 0.78
   5 !   15.0   0.2   1.3e-05     0.015       7      63 ..     209     257 ..     206     263 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.35
    PF13424.1 17 rlgdydeAlelyekalel.lrelgddhpdtaralnnlan 54
                  lg+y+ A++  +    +  ++ g+ +  t r++  l++
  MMETSP0890-20130614|19580_1 16 WLGNYQMAIAESNNLRLMnDELKGEKDEYTYRSYIGLGQ 54
                 589999999999999888555558888888999999987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.3
    PF13424.1  52 lanlylalgdydeAle 67 
                  +a++y + ++ +eA +
  MMETSP0890-20130614|19580_1 114 IAIIYDRENKDEEAFK 129
                  6778888888888755 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.04
    PF13424.1  53 anlylalgdydeAleylekAleiae 77 
                  a+l+ +  ++d A +y++k  +i+e
  MMETSP0890-20130614|19580_1 144 AQLCIKIYRNDVAQQYYKKMQQIDE 168
                  7899999***********9777765 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 3.6e-05
    PF13424.1  34 llrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                   ++el d  +   ++ln  a ++++l++y++A++yl +A+e
  MMETSP0890-20130614|19580_1 195 TYEELIDKFGASISLLNGVAVAHMQLKEYEDAEKYLMQAME 235
                  45555555555578899999999999999999999999986 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 1.3e-05
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdyd 63 
                  +ln  a ++++l++y++A++++ +a+e     gd +p+   +l nl  +y++l++ +
  MMETSP0890-20130614|19580_1 209 LLNGVAVAHMQLKEYEDAEKYLMQAMEK----GD-NPE---TLANLISTYYHLNKPE 257
                  5778888888888888888888888855....33.333...5666666677666665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         2   2.3e+03      11      42 ..      49      77 ..      47      79 .. 0.64
   2 ?    0.5   0.1         1   1.1e+03      19      37 ..      71      89 ..      54      94 .. 0.79
   3 ?   -1.7   0.0       5.4   6.1e+03       7      26 ..     114     133 ..     109     148 .. 0.65
   4 ?    0.8   0.0      0.83   9.5e+02       7      38 ..     143     174 ..     137     185 .. 0.68
   5 ?    0.4   0.0       1.1   1.3e+03       8      32 ..     178     204 ..     171     211 .. 0.73
   6 !   11.4   0.0   0.00033      0.38       5      40 ..     211     245 ..     207     249 .. 0.79
   7 ?    0.8   0.0       0.8   9.2e+02       1      35 [.     240     275 ..     240     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 2
    PF13428.1 11 llalGdpdeAiallrralalaPddaealllLa 42
                 ++ lG++d  ++  ++   +aP +++a +lLa
  MMETSP0890-20130614|19580_1 49 YIGLGQYDLVEREIDD---DAPMNLQAVKLLA 77
                 6667777776664443...5677777777777 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1
    PF13428.1 19 eAiallrralalaPddaea 37
                 +A++ll ++l++  ++ ea
  MMETSP0890-20130614|19580_1 71 QAVKLLAKYLKDPAKNKEA 89
                 5888888888876666666 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 5.4
    PF13428.1   7 larallalGdpdeAiallrr 26 
                   a+++ + +  +eA ++ ++
  MMETSP0890-20130614|19580_1 114 IAIIYDRENKDEEAFKAIKA 133
                  56777777777777777665 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.83
    PF13428.1   7 larallalGdpdeAiallrralalaPddaeal 38 
                  +a++++   + d A ++++++ + + d+   +
  MMETSP0890-20130614|19580_1 143 WAQLCIKIYRNDVAQQYYKKMQQIDEDSTLTQ 174
                  66666666777889999999999998886533 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 1.1
    PF13428.1   8 arallalGd..pdeAiallrralalaP 32 
                  a+++la+Gd   +eA+  +++++ ++ 
  MMETSP0890-20130614|19580_1 178 AWVHLAQGDekAKEAAYTYEELIDKFG 204
                  567888887556778888888887776 PP

  == domain 6    score: 11.4 bits;  conditional E-value: 0.00033
    PF13428.1   5 lalarallalGdpdeAiallrralalaPddaealll 40 
                     a a+++l ++++A+++l +a +++ d++e l +
  MMETSP0890-20130614|19580_1 211 NGVAVAHMQLKEYEDAEKYLMQAMEKG-DNPETLAN 245
                  56799******************8866.44665555 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.8
    PF13428.1   1 peallalarallalGdpdeAiallrral.alaPdda 35 
                  pe+l+ l   + +l+ p+e  + +   l +++P+++
  MMETSP0890-20130614|19580_1 240 PETLANLISTYYHLNKPEEVTNRYISQLkSQYPTHP 275
                  68899999*********9977744443314667665 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.5   1.7e+03      12      19 ..      17      24 ..      10      25 .. 0.85
   2 ?   -0.5   0.0       1.1   1.3e+03       5      21 ..     114     130 ..     113     139 .. 0.77
   3 !   10.9   0.1   0.00024      0.28       2      32 ..     210     238 ..     209     244 .. 0.83
   4 ?   -1.4   0.0       2.2   2.5e+03       1      20 [.     242     261 ..     242     269 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.5
    PF13176.1 12 lgdyekAi 19
                 lg+y+ Ai
  MMETSP0890-20130614|19580_1 17 LGNYQMAI 24
                 89*****9 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.1
    PF13176.1   5 LarlysrlgdyekAiel 21 
                  +a +y r ++ e+A ++
  MMETSP0890-20130614|19580_1 114 IAIIYDRENKDEEAFKA 130
                  577999***99999555 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00024
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdp 32 
                  l+  a+++++l +ye+A++++ +  a++k +
  MMETSP0890-20130614|19580_1 210 LNGVAVAHMQLKEYEDAEKYLMQ--AMEKGD 238
                  66779****************99..776554 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 2.2
    PF13176.1   1 allnLarlysrlgdyekAie 20 
                  +l nL ++y  l++ e+  +
  MMETSP0890-20130614|19580_1 242 TLANLISTYYHLNKPEEVTN 261
                  68999999999999888655 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.7     8e+02      13      22 ..      16      25 ..      13      26 .. 0.83
   2 ?   -2.1   0.0       3.9   4.5e+03      10      18 ..      48      56 ..      47      57 .. 0.84
   3 ?    0.7   0.0      0.49   5.6e+02       7      24 ..     114     131 ..     110     133 .. 0.85
   4 ?    2.5   0.0      0.14   1.6e+02       8      33 ..     144     169 ..     140     170 .. 0.81
   5 ?   -1.1   0.1         2   2.2e+03      18      28 ..     190     200 ..     178     203 .. 0.63
   6 ?   15.0   0.1   1.3e-05     0.015       4      29 ..     210     235 ..     208     239 .. 0.89
   7 ?   -2.8   0.0       6.8   7.7e+03      11      19 ..     250     258 ..     249     258 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.7
                 HTT-HHHHHH CS
   PF07719.12 13 klgdyeeAle 22
                  lg+y+ A++
  MMETSP0890-20130614|19580_1 16 WLGNYQMAIA 25
                 68****9986 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.9
                 HHHHTT-HH CS
   PF07719.12 10 ayyklgdye 18
                 +y+ lg+y+
  MMETSP0890-20130614|19580_1 48 SYIGLGQYD 56
                 799999997 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.49
                  HHHHHHHTT-HHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleaf 24 
                  ++ +y + ++ eeA +a 
  MMETSP0890-20130614|19580_1 114 IAIIYDRENKDEEAFKAI 131
                  6899**********9875 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.14
                  HHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   8 GlayyklgdyeeAleafekAleldPn 33 
                  +++++k  + + A ++++k  ++d +
  MMETSP0890-20130614|19580_1 144 AQLCIKIYRNDVAQQYYKKMQQIDED 169
                  667777778899*******9999976 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 2
                  HHHHHHHHHHH CS
   PF07719.12  18 eeAleafekAl 28 
                  +eA+  +e+ +
  MMETSP0890-20130614|19580_1 190 KEAAYTYEELI 200
                  67777777766 PP

  == domain 6    score: 15.0 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAle 29 
                  l+  + a+++l++ye+A++++ +A e
  MMETSP0890-20130614|19580_1 210 LNGVAVAHMQLKEYEDAEKYLMQAME 235
                  67789****************99987 PP

  == domain 7    score: -2.8 bits;  conditional E-value: 6.8
                  HHHTT-HHH CS
   PF07719.12  11 yyklgdyee 19 
                  yy+l+++ee
  MMETSP0890-20130614|19580_1 250 YYHLNKPEE 258
                  999999987 PP

>> PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.25   2.9e+02      30      61 ..     104     135 ..      96     148 .. 0.80
   2 ?    8.1   0.0    0.0023       2.6      28      72 ..     238     282 ..     231     287 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.25
    PF13720.1  30 keeikalkkaykllyrsgltleealeeleeel 61 
                  +++ ++l+ +  ++y ++++ eea+++++++ 
  MMETSP0890-20130614|19580_1 104 RADQSSLQMIIAIIYDRENKDEEAFKAIKAQS 135
                  5677889999999**999999****9999943 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0023
    PF13720.1  28 fskeeikalkkaykllyrsgltleealeeleeelaespeveelld 72 
                   ++e++++l ++y  l + +  ++  +++l+++++ +p+v+++++
  MMETSP0890-20130614|19580_1 238 DNPETLANLISTYYHLNKPEEVTNRYISQLKSQYPTHPHVQKIIQ 282
                  57899999*********99************************97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.1   3.5e+03      14      22 ..      17      25 ..      17      26 .. 0.88
   2 ?   -0.8   0.1       1.3   1.5e+03      11      18 ..      49      56 ..      46      57 .. 0.82
   3 ?   -2.9   0.0       6.5   7.4e+03       8      22 ..     115     129 ..     113     133 .. 0.64
   4 ?   -0.0   0.1      0.75   8.5e+02      20      32 ..     156     168 ..     151     170 .. 0.77
   5 ?   11.4   0.2   0.00016      0.19       9      29 ..     215     235 ..     208     237 .. 0.88
   6 ?   -2.8   0.0       5.8   6.6e+03       4      18 ..     243     257 ..     241     258 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.1
                 TT-HHHHHH CS
    PF13181.1 14 lGdydkAke 22
                 lG+y  A++
  MMETSP0890-20130614|19580_1 17 LGNYQMAIA 25
                 8****9986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.3
                 HHHTT-HH CS
    PF13181.1 11 YrqlGdyd 18
                 Y  lG+yd
  MMETSP0890-20130614|19580_1 49 YIGLGQYD 56
                 8999**99 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 6.5
                  --HHHHTT-HHHHHH CS
    PF13181.1   8 GdiYrqlGdydkAke 22 
                  + iY   ++ ++A +
  MMETSP0890-20130614|19580_1 115 AIIYDRENKDEEAFK 129
                  567777777677655 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.75
                  HHHHHH---HHHH CS
    PF13181.1  20 Akeylekalelkp 32 
                  A +y++k  +++ 
  MMETSP0890-20130614|19580_1 156 AQQYYKKMQQIDE 168
                  8999999888775 PP

  == domain 5    score: 11.4 bits;  conditional E-value: 0.00016
                  -HHHHTT-HHHHHHHHH---H CS
    PF13181.1   9 diYrqlGdydkAkeylekale 29 
                   +++ql++y+ A++yl++a e
  MMETSP0890-20130614|19580_1 215 VAHMQLKEYEDAEKYLMQAME 235
                  5789**************976 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 5.8
                  TTT---HHHHTT-HH CS
    PF13181.1   4 yynlGdiYrqlGdyd 18 
                  + nl ++Y  l++ +
  MMETSP0890-20130614|19580_1 243 LANLISTYYHLNKPE 257
                  678888999888876 PP

>> PF12923.2  Ribosomal RNA-processing protein 7 (RRP7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.6   0.00082      0.93       8      60 ..      78     136 ..      72     170 .. 0.77
   2 ?   -1.4   0.0       1.7     2e+03       3      24 ..     261     282 ..     259     293 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00082
    PF12923.2   8 eykrs.lpdeealqeevdeymekydkreeeakeea.....kkesepdeDGfitVtrkkk 60 
                  +y ++   ++ea  +++de+meky +r  +++ +        ++++de+ f  +++++ 
  MMETSP0890-20130614|19580_1  78 KYLKDpAKNKEAALSQCDEWMEKYANRADQSSLQMiiaiiYDRENKDEEAFKAIKAQSN 136
                  44444467789999***********9999999888898988889*******99998844 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.7
    PF12923.2   3 kkwlkeykrslpdeealqeevd 24 
                  ++++++ k+++p + ++q+ ++
  MMETSP0890-20130614|19580_1 261 NRYISQLKSQYPTHPHVQKIIQ 282
                  7899999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.79
# Mc/sec: 922.14
//
Query:       MMETSP0890-20130614|19604_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.6   2.3      0.023   14.6   1.6    1.0  1  PF14324.1 PINIT domain


Domain annotation for each model (and alignments):
>> PF14324.1  PINIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.6   1.7e-06     0.023      74     103 ..       3      32 ..       1      36 [] 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-06
    PF14324.1  74 eqeieFPpqievkvNgkqvkanlkglknkp 103
                  +q+ +FPp+++v  N+k+vk++ k  k+k+
  MMETSP0890-20130614|19604_1   3 QQDKAFPPHTKVNRNEKKVKEKQKKKKKKK 32 
                  6999*******************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2178  (0.159304); expected 273.4 (0.02)
Passed bias filter:                     1127  (0.0824312); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.48s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 125.03
//
Query:       MMETSP0890-20130614|19608_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   13.7   0.2      0.017   13.7   0.1    1.0  1  PF09731.4  Mitochondrial inner membrane protein
      0.089   10.6   0.1      0.088   10.6   0.1    1.0  1  PF05858.7  Bovine immunodeficiency virus surface protein (SU)
      0.091   11.0   0.6      0.098   10.9   0.4    1.0  1  PF03961.8  Protein of unknown function (DUF342)
       0.16   12.2   1.5       0.19   11.9   1.0    1.1  1  PF02465.13 Flagellar hook-associated protein 2 C-terminus


Domain annotation for each model (and alignments):
>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.9e-06     0.017     242     303 ..      12      71 ..       1      76 [. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.9e-06
    PF09731.4 242 ednl.skddlesliasakeevdqlskklaelkaeeeeeleraLkekkeellkkleeelskele 303
                  +d +  +  ++sl++++ ++++ ++++la++ ++ ++++++++++++   l+k ++ l+++++
  MMETSP0890-20130614|19608_1  12 DDPItMNRGADSLVQELSKDYKVMNQRLARMEQN-QDQIKNKIESNY--SLTKSNNSLLRAIA 71 
                  5556678899*********************987.567*********..46777777776665 PP

>> PF05858.7  Bovine immunodeficiency virus surface protein (SU)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.6e-05     0.088     442     484 ..      10      51 ..       4      77 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.6e-05
    PF05858.7 442 ncldPiqlnkseedlgknfsrplscvdgdlsslceqkdtllgy 484
                   c dPi++n+ ++ l +++s+  +++++ l+++ eq+++ +  
  MMETSP0890-20130614|19608_1  10 GCDDPITMNRGADSLVQELSKDYKVMNQRLARM-EQNQDQIKN 51 
                  699****************************99.555554443 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   2.9e-05     0.098     375     409 ..      23      57 ..      13      76 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.9e-05
    PF03961.8 375 eqleklletkeklkeeleeleaelkelkeeleskk 409
                  + +++l ++++ ++++l+ +e++++++k+++es +
  MMETSP0890-20130614|19608_1  23 SLVQELSKDYKVMNQRLARMEQNQDQIKNKIESNY 57 
                  66788888888888888888888888888888773 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0   5.6e-05      0.19       8      52 ..      23      70 ..      19      76 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.6e-05
   PF02465.13  8 slvkklma...aerapldrlkqqeqkleaklsaygtlksalsdlqsal 52
                 slv++l +   + +++l+r++q+++++++k+++  +l+++ ++l  a+
  MMETSP0890-20130614|19608_1 23 SLVQELSKdykVMNQRLARMEQNQDQIKNKIESNYSLTKSNNSLLRAI 70
                 56666655222567889****************999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1664  (0.121709); expected 273.4 (0.02)
Passed bias filter:                     1229  (0.0898917); expected 273.4 (0.02)
Passed Vit filter:                       144  (0.0105325); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.47s 00:00:00.94 Elapsed: 00:00:00.92
# Mc/sec: 203.17
//
Query:       MMETSP0890-20130614|19614_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 979.56
//
Query:       MMETSP0890-20130614|19622_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   16.4   7.8     0.0066   16.1   5.4    1.1  1  PF04554.8 Extensin-like region


Domain annotation for each model (and alignments):
>> PF04554.8  Extensin-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   5.4   4.8e-07    0.0066       5      48 ..       3      49 ..       1      54 [. 0.59

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.8e-07
    PF04554.8  5 spPppekss..PpppyvyksPPPpspykYksPPPpvyk.yksPpPpk 48
                 +pP  ++ +   +++  +++ PPp+   +++ PPp+++ +++ pP++
  MMETSP0890-20130614|19622_1  3 QPPQQQQLQqrQQQQQLFQQKPPPQQQLFQQQPPPLQQlFQQQPPQQ 49
                 45555544455556677988888867777776666555155656654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       907  (0.06634); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 223.39
//
Query:       MMETSP0890-20130614|19666_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-41  140.9   1.0    3.8e-41  140.8   0.7    1.0  1  PF00268.16 Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> PF00268.16  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.7   2.8e-45   3.8e-41       2     108 ..      19     128 ..      18     129 .] 0.97

  Alignments for each domain:
  == domain 1    score: 140.8 bits;  conditional E-value: 2.8e-45
                  CTTS--TT-T..TS-SSHHHHHHHHHHHHT---GGGS-GGGGHHHHHT.S-HHHHHHHHHHHHHHHTTHHHHHHHHHHTHHCC-SSHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00268.16   2 kllkenkkrf..ykiehpdilelykkavanrWlaeevdlskDikdvek.LseaerefykfvlaflaaaddlvnenlveslsaeveikdiehyygeqeaiEnvHsevYsli 108
                  +llken++rf  ++i+h d++e+ykka+a++W+aee+dl+ D kd++  L+++er+f++++laf+aa+d++vnenl+ ++ +ev+ ++++++yg+q+aiEn+HsevYsl+
  MMETSP0890-20130614|19666_1  19 PLLKENANRFvlFPIQHLDVWEMYKKAEASFWTAEEIDLASDRKDWSDkLTNNERHFISHILAFFAASDGIVNENLCMNFATEVQWPEARCFYGFQIAIENIHSEVYSLL 128
                  7899******************************************877***********************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.60
# Mc/sec: 515.22
//
Query:       MMETSP0890-20130614|19671_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-08   31.8   2.1    1.6e-07   30.8   0.1    2.0  2  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.069   11.1   0.5       0.23    9.4   0.2    1.7  2  PF11715.3  Nucleoporin Nup120/160
      0.076   12.2   0.0      0.079   12.1   0.0    1.0  1  PF00078.22 Reverse transcriptase (RNA-dependent DNA polymerase)


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.092   4.2e+02      34      39 .]       2       7 ..       1       7 [. 0.89
   2 !   30.8   0.1   3.4e-11   1.6e-07      15      39 .]      26      51 ..      19      51 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.092
                 EEEEEE CS
   PF00400.27 34 tirlWd 39
                 t+++W+
  MMETSP0890-20130614|19671_1  2 TCKIWN 7 
                 89***7 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 3.4e-11
                 EEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27 15 tcvafspd.gpllasgSrDgtirlWd 39
                 + va+sp+  + la+gS+D+++r+W+
  MMETSP0890-20130614|19671_1 26 YTVAWSPSyNTQLATGSSDKKVRIWN 51
                 689**********************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0    0.0087        40     244     274 ..       4      31 ..       1      40 [. 0.57
   2 ?    9.4   0.2   5.1e-05      0.23     230     250 ..      34      54 .]      15      54 .] 0.81

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0087
    PF11715.3 244 RvWnletgqclrttdileaaellpadslsyi 274
                  ++Wn+++g  l+t +        + ++++++
  MMETSP0890-20130614|19671_1   4 KIWNISNGEFLKTLERD---VASAFYTVAWS 31 
                  89999999996665433...11233333333 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 5.1e-05
    PF11715.3 230 gqtfvftlsrDgkLRvWnlet 250
                   +t ++t s D+k+R+Wn++t
  MMETSP0890-20130614|19671_1  34 YNTQLATGSSDKKVRIWNTDT 54 
                  57788999**********998 PP

>> PF00078.22  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05     0.079      67     100 ..      17      50 ..       4      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.7e-05
   PF00078.22  67 lklDlkkaFdsiphdpllkkltafglpqrfirli 100
                  l+ D+ +aF+++ ++p +++ +a g++++ +r++
  MMETSP0890-20130614|19671_1  17 LERDVASAFYTVAWSPSYNTQLATGSSDKKVRIW 50 
                  677*********************9999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.76
# Mc/sec: 170.27
//
Query:       MMETSP0890-20130614|19674_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-10   39.9   0.1    1.7e-09   38.6   0.1    1.6  1  PF13469.1  Sulfotransferase family
  ------ inclusion threshold ------
      0.055   13.3   1.2       0.43   10.4   0.8    2.2  1  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
       0.32    9.7   2.7        4.1    6.0   0.1    2.1  2  PF10009.4  Uncharacterized protein conserved in bacteria (DUF2252)
          6    6.4   8.8         10    5.7   6.1    1.3  1  PF02862.12 DDHD domain
        6.9    6.0  12.4         10    5.4   0.0    2.3  2  PF11947.3  Protein of unknown function (DUF3464)


Domain annotation for each model (and alignments):
>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   6.1e-13   1.7e-09       4     189 ..     166     417 ..     163     435 .. 0.70

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 6.1e-13
    PF13469.1   4 filGlpRSGttlLaraLlalhpaelgllapqapal.....adapkglaeraallpllradllsalrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahl...............................................lfpd.rfvvllRdPlavlasllrlllasllrrspyalrlalrkleallrllllgla...............larlwlelne 189
                  fi G++RSGtt++  +  a+hp +  ++++++++l     a a++++++++    +  + + ++++ +  ++   +++ + +  ++  +   ++  +++ +    + +++     +v+l+k+p+++                                               + +  rf++++R+P+a ++s++ +  +++l  + +  +++  + +a +++ +l+                  +++w+ l+ 
  MMETSP0890-20130614|19674_1 166 FIGGHHRSGTTIIW-RSIASHPKVAWFGEEYESGLdfsegAFAQDVYPRFGIGAEFGGQSMTQSGGGIGQYALGPPDEVLWTEEKANIQAQVRVLNAFGFYWKRKMPHQALE-DAQVFLEKSPPNVvlarylqalvdlrppdeqysdggiekdtfswekekkasslhipsfmaARSRaRFLFITRHPIANALSHQSFPGSRWLSTAQLLGHWLAVEHYAAANAQHLHFVyrlkletfasnatakILHVWHFLQL 417
                  999***********.7779****88888888777778899999999999999999999999977766664444444444444433333332222222222222222222222.5678999*****************************************************8888899*******9999897777766666666555555555555554444444446666667777775555555555544 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   0.00016      0.43      34      79 ..      76     133 ..       6     136 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00016
    PF09716.5  34 g..........tskalkkid...delekkkknkKillisaiatalallvggalGlgiyk 79 
                  +          +s+a+ + +   ++l+ +++++K+ +  a++ ++  +vg+a+  g+y 
  MMETSP0890-20130614|19674_1  76 EekkkkkeakkESAAI-EKNkklESLKLRQERNKPWMAFAVIGVALCAVGAAFSWGYYR 133
                  0333223333333333.2230004555558999***99999999999**********97 PP

>> PF10009.4  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2    0.0072        20     146     237 ..      48     139 ..      17     149 .. 0.58
   2 ?    6.0   0.1    0.0015       4.1     302     361 ..     341     401 ..     325     414 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0072
    PF10009.4 146 alkkarkrtrekllekltelekgkrrfkddppkllrlseeeraaieealekyaktlpedrrellsryevkDvarrvvGvG.SlGlrryvvLle 237
                  a k+ +++++++  ++  e + + ++  ++++k  + +++e+aaie+  + ++ +l+++r++    ++v+ va   vG + S+G  ry  L+ 
  MMETSP0890-20130614|19674_1  48 APKEEEEENQNETRNNQLEKT-NPKKKGTEEKKKKKEAKKESAAIEKNKKLESLKLRQERNKPWMAFAVIGVALCAVGAAfSWGYYRYGPLFF 139
                  333333333333333333333.22222223333333335677777777777777777777777777888888888888777777777766665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0015
    PF10009.4 302 rsfyvRelrpmkvsldlekldkkelkeyaklcgkalAraHarsddaa.iiagylgkskefd 361
                  + f+   ++p +++l+ + +  +++   a+l+g+ lA  H  +++a+ + + y  k ++f+
  MMETSP0890-20130614|19674_1 341 ARFLFITRHPIANALSHQSFPGSRWLSTAQLLGHWLAVEHYAAANAQhLHFVYRLKLETFA 401
                  468888899********************************96655547777777777776 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.1    0.0037        10     113     187 ..      24      96 ..      11     104 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0037
   PF02862.12 113 sslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekreelklralnsngr 187
                  ++++ g+a  l+ + +++s ++  ++ ++e+++++q+++++++ e+++ +k+ +ee+kk+k+++++++a+++n++
  MMETSP0890-20130614|19674_1  24 RKFRGGQAVPLEVETNEKSIQK--NDAPKEEEEENQNETRNNQLEKTNPKKKGTEEKKKKKEAKKESAAIEKNKK 96 
                  4555555554433222222222..222222222223445566666666666666666666666666666666665 PP

>> PF11947.3  Protein of unknown function (DUF3464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   9.8       2.4   6.5e+03       7      54 ..      44      91 ..      36      99 .. 0.57
   2 ?    5.4   0.0    0.0036        10      44      88 ..     321     367 ..     283     376 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.4
    PF11947.3  7 rlpfepkkkrkkaekklrktaetekaekksaskekkkkkkdekeeeaI 54
                 +++  pk++++++++++r+++ ++++ kk+ ++ekkkkk+++ke+ aI
  MMETSP0890-20130614|19674_1 44 QKNDAPKEEEEENQNETRNNQLEKTNPKKKGTEEKKKKKEAKKESAAI 91
                 334446666666666666555555555555555555655556666555 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0036
    PF11947.3  44 kkkdekeeeaIPevVadRmirRvlifvGiPlalGla..vfvlfyllv 88 
                  +k++++++  IP+ +a R   R l+++  P+a +l+  +f+ + +l 
  MMETSP0890-20130614|19674_1 321 EKEKKASSLHIPSFMAARSRARFLFITRHPIANALShqSFPGSRWLS 367
                  334677899**********************9998722455566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1727  (0.126317); expected 273.4 (0.02)
Passed bias filter:                      799  (0.0584406); expected 273.4 (0.02)
Passed Vit filter:                       152  (0.0111176); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.24u 0.49s 00:00:01.73 Elapsed: 00:00:01.68
# Mc/sec: 750.29
//
Query:       MMETSP0890-20130614|19701_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   30.2   0.2      0.036   14.5   0.0    3.1  3  PF04969.11 CS domain
     0.0047   16.5   0.0     0.0091   15.5   0.0    1.5  1  PF12957.2  Domain of unknown function (DUF3846)


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.22   1.5e+03      53      70 ..      88     105 ..      70     112 .. 0.76
   2 !   11.6   0.1   4.2e-05      0.29       2      21 ..     245     264 ..     244     278 .. 0.88
   3 !   14.5   0.0   5.2e-06     0.036      34      78 .]     300     343 ..     284     343 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.22
                  -BSS-EEEEEEEEEE--- CS
   PF04969.11  53 eLfgeIdpeesswkiedt 70 
                  ++++++d +e+++  e++
  MMETSP0890-20130614|19701_1  88 RFYASVDLDEATVERESR 105
                  4999******99998887 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.2e-05
                  --EEEEETTEEEEEEE---- CS
   PF04969.11   2 rydWyQtleeVtitipvkgv 21 
                  +y+W+Qt+e+++i++ ++ +
  MMETSP0890-20130614|19701_1 245 SYTWTQTDEDLEIRVRIPSE 264
                  7**************99976 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 5.2e-06
                  --EEEEE---....EEE---BSS-EEEEEEEEEE---..EEEEEEEE CS
   PF04969.11  34 kslkvsikgpgekeyllegeLfgeIdpeesswkiedt..kieitLkK 78 
                  +sl ++++g   ++ l + +Lf++++++++sw++ d+  +++++L+K
  MMETSP0890-20130614|19701_1 300 DSLLLNLNG---APLLHCPRLFNKVSVDDASWTLDDNntTVVLSLEK 343
                  445555555...77777778****************99999999998 PP

>> PF12957.2  Domain of unknown function (DUF3846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-06    0.0091      36      84 ..     141     204 ..      96     214 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-06
    PF12957.2  36 l........ddgvslvvneeGklkglplNraata.......leeegdlqdpivGdvvllgeded 84 
                  l        + +v ++++e G+l++ p N +a         le+ ++ +d++ G +   g ++d
  MMETSP0890-20130614|19701_1 141 LsnptsennYIAVKMYIDEIGALRKRPRNTRAESvaaecagLESLHFCGDVYIGCIQAGGRNHD 204
                  34445555567899********************996666666666666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.51s 00:00:00.95 Elapsed: 00:00:01.11
# Mc/sec: 770.72
//
Query:       MMETSP0890-20130614|19709_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-13   50.5   0.3      2e-08   34.6   0.0    2.9  2  PF12893.2 Putative lumazine-binding
     0.0099   15.5   0.2      0.015   14.9   0.1    1.3  1  PF12231.3 Rap1-interacting factor 1 N terminal
  ------ inclusion threshold ------
      0.023   14.2   0.1      0.041   13.4   0.0    1.4  1  PF05862.6 Helicobacter pylori IceA2 protein


Domain annotation for each model (and alignments):
>> PF12893.2  Putative lumazine-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.6e-05      0.12      22     112 ..      14     103 ..       1     107 [. 0.81
   2 !   34.6   0.0   4.4e-12     2e-08       2     113 ..     127     256 ..     126     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.6e-05
    PF12893.2  22 aaklkkafhpdaalvgvregklrresleelialvksraspaskgaqrereilsidvvgdvAsvkvelelpgkrftDyLtllk...vdgeWrIvn 112
                    ++++a  ++a  v+v ++ + +++ +++i   ++    ++++++  +ei+++  ++++As+ v   + +k +t +L ll       +W+I++
  MMETSP0890-20130614|19709_1  14 NGHFEEAYYENAVRVTVSPDGIVSSTTKAMILSEEK----EDRSDKSMDEIKEMMEEDTMASALVSYIVGDKVWTSILVLLLdnsKSKQWQIIS 103
                  346788999999999999999999999999877665....789999*********************************9973335579***97 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 4.4e-12
    PF12893.2   2 deaaieavvekYfdglyegdaaklkkafhpdaalvgvregklrresleelialvksra.sp.........askgaqrereilsidvvg.dvAsvkvelelpgkrftDyLtllkvdge.......WrIvnK 113
                  d a ++a +++Y  +  ++++++++k+f +  +l  ++++ l++ +++++ ++v++r  sp          ++ a+   +i+si++++   A vk+++ +    +tD+Lt+ k+ ++       WrI++K
  MMETSP0890-20130614|19709_1 127 DLAGVAAGADAYSAANLNANKEAMEKVFTQYSRLTFATDQGLTVIPANDFHNMVDNRWsSPkhapyvhlqFDPRAAKVGAIQSISLASpRLALVKLRVAFAPVCYTDLLTFAKFSDSitggdlpWRIIAK 256
                  5677889999***********************************************856644444433333444455679********************************98754444555888877 PP

>> PF12231.3  Rap1-interacting factor 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.3e-06     0.015      19     115 ..       2     103 ..       1     112 [. 0.73

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.3e-06
    PF12231.3  19 kdllsallssakdirlkaialgleaalllgkekelskkvleilersldedr..klveeleerlek..mlkdkekgvsvpkiW.svvilLLrkkridewellk 115
                   ++++++++++ + + +++ ++  + +++ ++  +s+++++++ ++ +edr  k + e+ e +e+  m++   +     k+W s+++lLL +++ ++w+ + 
  MMETSP0890-20130614|19709_1   2 SKFVRGVVEAYLNGHFEEAYYENAVRVTVSPDGIVSSTTKAMILSEEKEDRsdKSMDEIKEMMEEdtMASALVSYIVGDKVWtSILVLLLDNSKSKQWQIIS 103
                  56788888888888999999999*****************99888775555225666666666542244444333333589*456688888888****9986 PP

>> PF05862.6  Helicobacter pylori IceA2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     9e-06     0.041       6      42 ..       3      40 ..       1      51 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9e-06
    PF05862.6  6 kvvnGkiqeyenGiykRtYdsnivavdvdG.hvvavvt 42
                 k v G +  y nG +   Y  n+v v v+  ++v+ +t
  MMETSP0890-20130614|19709_1  3 KFVRGVVEAYLNGHFEEAYYENAVRVTVSPdGIVSSTT 40
                 8899***********************99526777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 852.73
//
Query:       MMETSP0890-20130614|19731_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-32  112.2   0.0    3.9e-32  111.4   0.0    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   2.9e-36   3.9e-32       2     145 ..      75     208 ..      74     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 2.9e-36
   PF00160.16   2 vdietsskGrivieLfedkaPktvenFlklakegfYdgtkfhrvikgfmiqgGdpsgkgangeekkaggesipdEikkkklkhkrGalamartgpepnsngsqFfItlgdaphlDgky.tvFGkVvegmdvvekieavetdekpe 145
                  v++ t ++G++vieL+++ aPk v +F +l+ +gf +g kf+rv+++f++q+G p +++ +     ++  ++pd++   k ++ rG+l++a  g  pn++++q fI+++d+p+lD++  + +Gk+++gmdvv+ki+a+  + kp 
  MMETSP0890-20130614|19731_1  75 VKVAT-TEGEFVIELHPEWAPKGVSRFEELCSTGFLEGAKFFRVVPNFIVQFGLPADPSLT-----KKYPNLPDDP--VKISNARGTLTFATAG--PNTRTTQLFINYRDNPFLDRQGfAPIGKIISGMDVVDKINAEYGE-KPD 208
                  56777.49**********************************************8888661.....2233599999..46899********876..7******************9888*****************96533.343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       196  (0.0143359); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:01.03
# Mc/sec: 518.82
//
Query:       MMETSP0890-20130614|19740_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-16   59.5  23.8    2.5e-07   30.1   0.9    5.6  5  PF13414.1  TPR repeat
    1.3e-14   53.7  21.5    6.9e-08   32.2   0.1    4.8  4  PF13424.1  Tetratricopeptide repeat
    7.4e-12   44.2  13.2     0.0005   19.4   0.0    6.6  6  PF00515.23 Tetratricopeptide repeat
    7.9e-12   44.0  20.5      8e-05   22.1   0.1    6.9  6  PF07719.12 Tetratricopeptide repeat
    1.6e-10   39.8   0.0      0.019   14.5   0.0    5.7  5  PF13181.1  Tetratricopeptide repeat
    4.7e-07   29.7  40.4      0.002   18.4   1.1    8.1  8  PF13428.1  Tetratricopeptide repeat
    6.6e-07   28.5  12.3      0.078   12.7   0.0    6.6  6  PF13176.1  Tetratricopeptide repeat
    5.2e-06   26.1  15.5        1.8    8.8   0.0    6.9  7  PF13431.1  Tetratricopeptide repeat
    5.5e-06   26.7  20.3    0.00023   21.5   2.5    6.7  8  PF13432.1  Tetratricopeptide repeat
    0.00048   19.1   7.2     0.0046   15.9   1.7    3.7  2  PF13429.1  Tetratricopeptide repeat
    0.00061   19.4   0.4    0.00061   19.4   0.2    5.6  7  PF13371.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.078   12.0   1.8       0.25   10.3   0.0    2.7  3  PF04733.9  Coatomer epsilon subunit
        0.2   11.1   6.4       0.56    9.6   4.4    1.7  1  PF04546.8  Sigma-70, non-essential region
       0.42    8.9  16.4       0.44    8.8   1.3    2.1  2  PF03344.10 Daxx Family
        0.5    9.4  14.4      0.029   13.5   4.7    2.0  2  PF05285.7  SDA1
        8.4    5.4  10.4         13    4.7   7.2    1.2  1  PF06524.7  NOA36 protein


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   2.3e-07    0.0002       2      40 ..      93     131 ..      92     134 .. 0.92
   2 !   30.1   0.9   2.9e-10   2.5e-07       2      69 .]     131     197 ..     130     197 .. 0.95
   3 !   15.5   0.1     1e-05    0.0088       2      59 ..     204     260 ..     203     268 .. 0.85
   4 ?    5.2   0.1     0.017        15      43      67 ..     366     393 ..     358     400 .. 0.59
   5 ?    1.7   0.7       0.2   1.7e+02       3      29 ..     513     539 ..     511     541 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.3e-07
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaely 40 
                  +A+++  ++  + ++g+++ A ea+e+A+ l pn+a + 
  MMETSP0890-20130614|19740_1  93 LAQKWTKKAFLYAQRGRLEAAAEAFERAVTLTPNDAPYR 131
                  699********************************9765 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 2.9e-10
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +A  l ++G  l   g++ eA++ +++Al l p+ + ++ +l+ a+ +  +   eAl+ y +Al  +P
  MMETSP0890-20130614|19740_1 131 RAALLINAGSFLAFSGKPREALQPLREALTLAPDEPRALHALGNALHQC-DASNEALHVYARALDKAP 197
                  688999******************************************6.89************8776 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 1e-05
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAle 59 
                  nA  l++ +  l+++g+ + A + ++k+l+++p+ +  ++nlA a +       +A +
  MMETSP0890-20130614|19740_1 204 NAPLLNNVATILLSKGERALARATLQKSLAIEPSAPGTLFNLAMATYSEA-CETAAQR 260
                  677899999**********************************9987755.4455555 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.017
    PF13414.1  43 lAlaylklg...kdyeeAledyekAlel 67 
                  +A ayl+l    +++++A+  ++kA++l
  MMETSP0890-20130614|19740_1 366 RASAYLELAsvqENRDQAISSLHKAIAL 393
                  5555665543334555666666666654 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.2
    PF13414.1   3 AealkelGnalfkegdydeAieayekA 29 
                  A+a   lG a+  ++d + A++ y  A
  MMETSP0890-20130614|19740_1 513 ALARADLGAAYCDRNDCALALDSYLAA 539
                  777888999999999999999999876 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   8.1e-11   6.9e-08       9      77 ..      98     163 ..      92     164 .. 0.93
   2 !   24.6   0.2   1.9e-08   1.6e-05       2      76 ..     163     235 ..     162     237 .. 0.88
   3 !    8.3   0.8    0.0022       1.9      28      75 ..     349     393 ..     340     404 .. 0.63
   4 ?    0.5   1.7      0.62   5.3e+02      42      72 ..     509     539 ..     501     541 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 8.1e-11
    PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  +  a ++ + g+++ A e +e+a++l   +++d p +a +l n +  ++  g+  eAl+ l++Al++a+
  MMETSP0890-20130614|19740_1  98 TKKAFLYAQRGRLEAAAEAFERAVTL---TPNDAPYRAALLINAGSFLAFSGKPREALQPLREALTLAP 163
                  67799*******************99...59999999****************************9985 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.9e-08
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalellrelgdd.hpdtaralnnlanlylalgdydeAleylekAleia 76 
                  pd  ++l+ l+++l++     eAl  y +al+ +   g++ +p+ a +lnn a+++l +g+ + A++ l+k+l+i 
  MMETSP0890-20130614|19740_1 163 PDEPRALHALGNALHQCDASNEALHVYARALDKAP--GNEfPPN-APLLNNVATILLSKGERALARATLQKSLAIE 235
                  677899*************************9853..4442666.999*************************996 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0022
    PF13424.1  28 yekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  +  +l   +++++d h  +a+a+++la +++ +   d+A+  l+kA+++
  MMETSP0890-20130614|19740_1 349 LLDVLRHgAEHARDIHR-RASAYLELASVQENR---DQAISSLHKAIAL 393
                  55556666667777764.477777777776666...5555556665555 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.62
    PF13424.1  42 hpdtaralnnlanlylalgdydeAleylekA 72 
                   + +a a  +l+ +y  ++d + Al+ +  A
  MMETSP0890-20130614|19740_1 509 AALRALARADLGAAYCDRNDCALALDSYLAA 539
                  567799999***************9999766 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.8e-07    0.0005       3      34 .]      96     127 ..      94     127 .. 0.92
   2 !    7.7   0.0     0.003       2.6       8      33 ..     139     164 ..     132     165 .. 0.81
   3 !   10.6   0.1   0.00035      0.29       2      34 .]     167     199 ..     166     199 .. 0.93
   4 !    6.5   0.0    0.0067       5.7       2      33 ..     206     237 ..     205     237 .. 0.94
   5 ?    3.3   0.0     0.069        59      14      33 ..     377     396 ..     372     397 .. 0.85
   6 ?   -1.5   1.2       2.3     2e+03       3      25 ..     515     537 ..     513     540 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.8e-07
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   3 alynlGnaylklgkydeAleyyekALelnPnn 34 
                   +  ++ +y + g+++ A e++e+A++l Pn+
  MMETSP0890-20130614|19740_1  96 KWTKKAFLYAQRGRLEAAAEAFERAVTLTPND 127
                  59999***********************9986 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.003
                  HHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   8 GnaylklgkydeAleyyekALelnPn 33 
                  G  +   gk+ eAl+  ++AL+l P+
  MMETSP0890-20130614|19740_1 139 GSFLAFSGKPREALQPLREALTLAPD 164
                  55566679*****************8 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00035
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                  +al  lGna+++    +eAl  y +AL   P n
  MMETSP0890-20130614|19740_1 167 RALHALGNALHQCDASNEALHVYARALDKAPGN 199
                  79999**********************999976 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0067
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                    l+n + ++l++g+   A +  +k L ++P+
  MMETSP0890-20130614|19740_1 206 PLLNNVATILLSKGERALARATLQKSLAIEPS 237
                  679***************************96 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.069
                  TT-HHHHHHHHHHHHHHHTT CS
   PF00515.23  14 lgkydeAleyyekALelnPn 33 
                  +++ d+A+    kA+ l ++
  MMETSP0890-20130614|19740_1 377 QENRDQAISSLHKAIALLHE 396
                  7888***********99765 PP

  == domain 6    score: -1.5 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                  a   lG+ay   ++   Al+ y 
  MMETSP0890-20130614|19740_1 515 ARADLGAAYCDRNDCALALDSYL 537
                  66779****99999999999885 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   9.3e-08     8e-05       4      34 .]      97     127 ..      94     127 .. 0.92
   2 ?    6.2   0.0     0.012        10       2      33 ..     133     164 ..     132     165 .. 0.91
   3 !   14.4   0.2   2.8e-05     0.024       1      34 []     166     199 ..     166     199 .. 0.96
   4 !    8.5   0.0    0.0021       1.8       3      33 ..     207     237 ..     205     238 .. 0.93
   5 ?    3.2   0.1      0.11        92      14      31 ..     377     394 ..     365     397 .. 0.88
   6 ?   -2.3   1.0       6.1   5.2e+03       5      27 ..     517     539 ..     503     540 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 9.3e-08
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                  +   + +y+++g++e A+eafe+A+ l Pn+
  MMETSP0890-20130614|19740_1  97 WTKKAFLYAQRGRLEAAAEAFERAVTLTPND 127
                  78899************************97 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.012
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                   +l n G  ++ +g++ eAl+ +++Al l+P+
  MMETSP0890-20130614|19740_1 133 ALLINAGSFLAFSGKPREALQPLREALTLAPD 164
                  678899999999*******************7 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 2.8e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++al++lG+a+ + +  +eAl+ + +Al  +P+n
  MMETSP0890-20130614|19740_1 166 PRALHALGNALHQCDASNEALHVYARALDKAPGN 199
                  589*****************************87 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0021
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  +l+n + +++ +g+ + A++ ++k+l+++P 
  MMETSP0890-20130614|19740_1 207 LLNNVATILLSKGERALARATLQKSLAIEPS 237
                  7999************************996 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.11
                  TT-HHHHHHHHHHHHHH- CS
   PF07719.12  14 lgdyeeAleafekAleld 31 
                  + + ++A+  + kA++l 
  MMETSP0890-20130614|19740_1 377 QENRDQAISSLHKAIALL 394
                  7899***********996 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 6.1
                  HHHHHHHHHTT-HHHHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekA 27 
                    lG ay  ++d + Al+ +  A
  MMETSP0890-20130614|19740_1 517 ADLGAAYCDRNDCALALDSYLAA 539
                  56899999888888888888776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.2e-05     0.019       4      33 ..      97     126 ..      92     127 .. 0.90
   2 !    6.4   0.0    0.0089       7.6       2      33 ..     133     164 ..     132     165 .. 0.93
   3 ?    1.7   0.0      0.29   2.5e+02       2      33 ..     167     199 ..     166     200 .. 0.90
   4 !    7.6   0.0    0.0036         3       2      32 ..     206     236 ..     205     239 .. 0.91
   5 ?    1.2   0.0      0.41   3.5e+02      15      29 ..     378     392 ..     364     394 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.2e-05
                  TTT---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkpr 33 
                  ++ ++ +Y+q G+ ++A e++e+a+ l p+
  MMETSP0890-20130614|19740_1  97 WTKKAFLYAQRGRLEAAAEAFERAVTLTPN 126
                  6667889*******************9984 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0089
                  --TTT---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkpr 33 
                  ++++n G+ ++  G+  +A++ l++al l+p+
  MMETSP0890-20130614|19740_1 133 ALLINAGSFLAFSGKPREALQPLREALTLAPD 164
                  6899**************************96 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.29
                  --TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp.r 33 
                  +a+++lG ++ q     +A+  + +al+ +p +
  MMETSP0890-20130614|19740_1 167 RALHALGNALHQCDASNEALHVYARALDKAPgN 199
                  68999********99************999866 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0036
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                  ++++n + i++++G+  +A + l+k l + p
  MMETSP0890-20130614|19740_1 206 PLLNNVATILLSKGERALARATLQKSLAIEP 236
                  6789999********************9998 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.41
                  T-HHHHHHHHH---H CS
    PF13181.1  15 GdydkAkeylekale 29 
                   + d+A+++l ka+ 
  MMETSP0890-20130614|19740_1 378 ENRDQAISSLHKAIA 392
                  57799*****99986 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.1   2.4e-06     0.002       6      41 ..      99     134 ..      94     137 .. 0.90
   2 !   18.2   1.0   2.8e-06    0.0024       3      42 ..     134     173 ..     131     175 .. 0.88
   3 !    8.2   0.2    0.0047         4       1      34 [.     166     199 ..     166     201 .. 0.95
   4 !   10.3   0.1   0.00094       0.8       5      43 ..     209     247 ..     205     248 .. 0.89
   5 ?   -0.7   0.1       3.4   2.9e+03      25      40 ..     290     305 ..     286     309 .. 0.74
   6 ?    2.8   0.1      0.25   2.1e+02       8      30 ..     367     393 ..     360     403 .. 0.64
   7 ?    1.5   1.4      0.65   5.5e+02       3      27 ..     515     539 ..     502     550 .. 0.87
   8 ?   -0.9   0.1         4   3.4e+03      19      38 ..     578     598 ..     574     599 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.4e-06
    PF13428.1   6 alarallalGdpdeAiallrralalaPddaealllL 41 
                  + a +++++G++++A+++++ra+ l P+da ++ +L
  MMETSP0890-20130614|19740_1  99 KKAFLYAQRGRLEAAAEAFERAVTLTPNDAPYRAAL 134
                  56889*************************999887 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.8e-06
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLa 42 
                  +l   + +l+ +G p eA++ lr+al laPd+++al++L+
  MMETSP0890-20130614|19740_1 134 LLINAGSFLAFSGKPREALQPLREALTLAPDEPRALHALG 173
                  455678888999**************************98 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0047
    PF13428.1   1 peallalarallalGdpdeAiallrralalaPdd 34 
                  p+al al++al +     eA+ ++ ral +aP++
  MMETSP0890-20130614|19740_1 166 PRALHALGNALHQCDASNEALHVYARALDKAPGN 199
                  689*****************************98 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00094
    PF13428.1   5 lalarallalGdpdeAiallrralalaPddaealllLar 43 
                     a +ll  G+ + A+a l++ la  P+ +  l++La 
  MMETSP0890-20130614|19740_1 209 NNVATILLSKGERALARATLQKSLAIEPSAPGTLFNLAM 247
                  56788999**************************99996 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 3.4
    PF13428.1  25 rralalaPddaealll 40 
                  rr+++++P+  +a l+
  MMETSP0890-20130614|19740_1 290 RRLIRADPEAIRAMLQ 305
                  7888999988888765 PP

  == domain 6    score: 2.8 bits;  conditional E-value: 0.25
    PF13428.1   8 aralla....lGdpdeAiallrralal 30 
                  a a+l+    +++ d+Ai  l +a+al
  MMETSP0890-20130614|19740_1 367 ASAYLElasvQENRDQAISSLHKAIAL 393
                  444444112256788888888888875 PP

  == domain 7    score: 1.5 bits;  conditional E-value: 0.65
    PF13428.1   3 allalarallalGdpdeAiallrra 27 
                  a+++l++a+ +++d + A++ + +a
  MMETSP0890-20130614|19740_1 515 ARADLGAAYCDRNDCALALDSYLAA 539
                  7889999999999999999988887 PP

  == domain 8    score: -0.9 bits;  conditional E-value: 4
    PF13428.1  19 eAiallrral.alaPddaeal 38 
                  +A+a+l++ + al+P+ +e++
  MMETSP0890-20130614|19740_1 578 DALAALNAFVnALSPEPLEVQ 598
                  799999998855789998887 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   9.1e-05     0.078       8      35 ..     103     128 ..      99     129 .. 0.92
   2 ?   -0.6   0.0       1.6   1.4e+03       2      34 ..     135     165 ..     134     167 .. 0.73
   3 !    8.4   0.1    0.0021       1.8       1      34 [.     168     199 ..     168     201 .. 0.95
   4 ?    4.0   0.0     0.055        47       2      31 ..     208     237 ..     207     242 .. 0.90
   5 ?    3.4   0.1     0.085        73       8      28 ..     369     393 ..     363     403 .. 0.70
   6 ?    2.1   0.2      0.21   1.8e+02       5      30 ..     519     542 ..     515     548 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.1e-05
    PF13176.1   8 lysrlgdyekAielyeraLaltkdplda 35 
                  ly ++g+ e A+e++er  a+t +p+da
  MMETSP0890-20130614|19740_1 103 LYAQRGRLEAAAEAFER--AVTLTPNDA 128
                  89***************..***999986 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.6
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkdpld 34 
                  l n ++    +g+ ++A++ +++  alt +p++
  MMETSP0890-20130614|19740_1 135 LINAGSFLAFSGKPREALQPLRE--ALTLAPDE 165
                  56777777778999999999999..66665555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0021
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                  al++L+++  ++    +A+ +y r  al+k+p++
  MMETSP0890-20130614|19740_1 168 ALHALGNALHQCDASNEALHVYAR--ALDKAPGN 199
                  79**********************..***99987 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.055
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                  l+n a +  + g++  A   ++++La++ +
  MMETSP0890-20130614|19740_1 208 LNNVATILLSKGERALARATLQKSLAIEPS 237
                  8999*******************9999865 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.085
    PF13176.1   8 lysr....lgdyekAielyeraLal 28 
                  +y +    + ++++Ai+ + +a+al
  MMETSP0890-20130614|19740_1 369 AYLElasvQENRDQAISSLHKAIAL 393
                  55555555899********998844 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.21
    PF13176.1   5 LarlysrlgdyekAielyeraLaltk 30 
                  L+ +y++++d   A++ y +  a ++
  MMETSP0890-20130614|19740_1 519 LGAAYCDRNDCALALDSYLA--AAHD 542
                  999************99999..7665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.1   9.2e+02      16      32 ..      97     113 ..      97     115 .. 0.87
   2 !    8.7   0.0    0.0022       1.9       1      34 []     116     153 ..     116     153 .. 0.85
   3 !    8.1   0.1    0.0036       3.1       3      25 ..     156     178 ..     155     186 .. 0.85
   4 !    8.8   0.0    0.0021       1.8       2      33 ..     189     225 ..     188     226 .. 0.83
   5 ?    4.4   0.0     0.053        45       2      22 ..     228     248 ..     227     261 .. 0.86
   6 ?   -0.9   0.0       2.8   2.4e+03      12      28 ..     366     382 ..     364     400 .. 0.77
   7 ?   -1.2   0.1       3.4   2.9e+03      13      28 ..     513     528 ..     509     533 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.1
    PF13431.1  16 ynnLAelllnnGdleeA 32 
                  ++ +A l++ +G+le A
  MMETSP0890-20130614|19740_1  97 WTKKAFLYAQRGRLEAA 113
                  77899*********988 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0022
    PF13431.1   1 lyekaleldPnn....adaynnLAelllnnGdleeAeq 34 
                  ++e+a+ l Pn+    a ++ n + +l+  G+++eA+q
  MMETSP0890-20130614|19740_1 116 AFERAVTLTPNDapyrAALLINAGSFLAFSGKPREALQ 153
                  589*********66666666699************987 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0036
    PF13431.1   3 ekaleldPnnadaynnLAellln 25 
                  ++al l+P+ + a+++L+++l+ 
  MMETSP0890-20130614|19740_1 156 REALTLAPDEPRALHALGNALHQ 178
                  79******************985 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.0021
    PF13431.1   2 yekaleldPnn.....adaynnLAelllnnGdleeAe 33 
                  y +al+++P n     a+++nn A++ll++G+ + A+
  MMETSP0890-20130614|19740_1 189 YARALDKAPGNefppnAPLLNNVATILLSKGERALAR 225
                  7788888766666666***************988887 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.053
    PF13431.1   2 yekaleldPnnadaynnLAel 22 
                  ++k+l+++P  +  ++nLA +
  MMETSP0890-20130614|19740_1 228 LQKSLAIEPSAPGTLFNLAMA 248
                  79*****************75 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 2.8
    PF13431.1  12 nadaynnLAelllnnGd 28 
                   a ay +LA +  n+ +
  MMETSP0890-20130614|19740_1 366 RASAYLELASVQENRDQ 382
                  57788888888777655 PP

  == domain 7    score: -1.2 bits;  conditional E-value: 3.4
    PF13431.1  13 adaynnLAelllnnGd 28 
                  a a+  L+ ++++++d
  MMETSP0890-20130614|19740_1 513 ALARADLGAAYCDRND 528
                  668889999**99887 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.2   2.1e-05     0.018       4      31 ..     101     128 ..      98     134 .. 0.56
   2 !   21.5   2.5   2.7e-07   0.00023       4      65 .]     139     200 ..     136     200 .. 0.94
   3 !   16.5   0.6     1e-05    0.0089      14      65 .]     183     239 ..     180     240 .. 0.94
   4 !    7.9   0.0    0.0052       4.4       4      40 ..     212     248 ..     209     250 .. 0.91
   5 ?   -2.0   0.1       6.6   5.6e+03      25      45 ..     308     332 ..     297     356 .. 0.62
   6 ?    0.1   1.0       1.4   1.2e+03      14      55 ..     343     385 ..     339     395 .. 0.68
   7 ?   -0.9   4.5         3   2.5e+03       8      52 ..     499     542 ..     497     556 .. 0.80
   8 ?   -0.5   0.2       2.3   1.9e+03      15      30 ..     578     594 ..     575     599 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.1e-05
    PF13432.1   4 ArallraGdydeAlaaleaalalaPeaa 31 
                  A ++ ++G++++A++a+e+a+ l P +a
  MMETSP0890-20130614|19740_1 101 AFLYAQRGRLEAAAEAFERAVTLTPNDA 128
                  4455555555555555555555555555 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.7e-07
    PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPddp 65 
                  + +l  +G+++eAl+ l++al laP+ ++al +l+ al++     eA+ ++++al+ aP+++
  MMETSP0890-20130614|19740_1 139 GSFLAFSGKPREALQPLREALTLAPDEPRALHALGNALHQCDASNEALHVYARALDKAPGNE 200
                  6678899****************************************************985 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1e-05
    PF13432.1  14 deAlaaleaalalaPe.....aaeallllaeallrlgrldeAaallraalalaPddp 65 
                   eAl+++ +al++aP+     +a  l + a +ll +g+ + A+a l++ la+ P++p
  MMETSP0890-20130614|19740_1 183 NEALHVYARALDKAPGnefppNAPLLNNVATILLSKGERALARATLQKSLAIEPSAP 239
                  58************7777777*********************************987 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0052
    PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaea 40 
                  A  ll  G+ + A+a l++ la +P a+  l++la+a
  MMETSP0890-20130614|19740_1 212 ATILLSKGERALARATLQKSLAIEPSAPGTLFNLAMA 248
                  778999999***********************99986 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 6.6
    PF13432.1  25 ala....Peaaeallllaeallrlg 45 
                  +l     P+a+  + l+ ++l+ +g
  MMETSP0890-20130614|19740_1 308 DLLdraePHAPSGSSLRERILALRG 332
                  4444446666666666666655554 PP

  == domain 6    score: 0.1 bits;  conditional E-value: 1.4
    PF13432.1  14 deAlaaleaalalaPeaaeallllaeallrlgrldeAa.allr 55 
                   +A + l ++l+   e+a+   ++a a+l+l  ++e + +++ 
  MMETSP0890-20130614|19740_1 343 NDAKRDLLDVLRHGAEHARDIHRRASAYLELASVQENRdQAIS 385
                  5777778888888877666666777777777666666655554 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 3
    PF13432.1   8 lraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.a 52 
                  +r ++  +A aal+a+ +++     a+  + +++l+l  + +Aa  
  MMETSP0890-20130614|19740_1 499 FRKRNKHDATAALRALARAD--LGAAYCDRNDCALALDSYLAAAhD 542
                  56677788999998888888..778999999999999888888855 PP

  == domain 8    score: -0.5 bits;  conditional E-value: 2.3
    PF13432.1  15 eAlaaleaalala.Pea 30 
                  +Alaal+a++ +  Pe 
  MMETSP0890-20130614|19740_1 578 DALAALNAFVNALsPEP 594
                  78888888888777554 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.7   5.4e-06    0.0046     146     245 ..      94     197 ..      81     199 .. 0.79
   2 ?   -2.2   0.0       1.7   1.5e+03     120     182 ..     538     599 ..     525     605 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.4e-06
    PF13429.1 146 alfllaraellrqegqkkkAlrllrralalkpassdlraallWlliDlgr....raelrealaawkaea...esdsaLwgpfaaayllLgrpkkALeylrkqaksns 245
                  a+ +   a l+ q+g+ ++A ++++ra++l p+++  raall +   +g+      + real++++++      +++   +++ a  +   +++AL+ + + +++ +
  MMETSP0890-20130614|19740_1  94 AQKWTKKAFLYAQRGRLEAAAEAFERAVTLTPNDAPYRAALLIN---AGSflafSGKPREALQPLREALtlaPDEPRALHALGNALHQCDASNEALHVYARALDKAP 197
                  667999999*******************************9843...33311112335779999998877776777888899999999999********99888765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.7
    PF13429.1 120 lerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpassdl 182
                  + ++  ++ ++++l+s  + ++++q   + +   + +  +++  +Al+++ +al+ +p + +l
  MMETSP0890-20130614|19740_1 538 AAAHDGLRGVRAFLES-DAAPKLKQHDHTSFDNLTQQIAQNDALAALNAFVNALSPEPLEVQL 599
                  4445556666777777.4444444443333333334445566778888888888887776665 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   7.2e-07   0.00061      31      65 ..      96     131 ..      90     136 .. 0.84
   2 !    8.5   1.6    0.0018       1.6      11      60 ..     148     197 ..     141     211 .. 0.86
   3 ?    1.6   0.0      0.26   2.2e+02      35      63 ..     211     239 ..     200     260 .. 0.75
   4 ?   -0.4   0.2       1.1   9.6e+02       6      30 ..     295     319 ..     291     336 .. 0.76
   5 ?   -2.9   0.1       6.8   5.8e+03      36      45 ..     367     376 ..     353     393 .. 0.57
   6 ?   -2.3   0.4       4.3   3.7e+03      34      39 ..     518     523 ..     503     543 .. 0.50
   7 ?   -0.8   0.0       1.5   1.2e+03      46      64 ..     577     596 ..     570     599 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 7.2e-07
    PF13371.1  31 erRDrGlllaqlgclaaAaedLeaflelcp.dapda 65 
                   +   ++l+aq+g+l+aAae++e+++ l p dap +
  MMETSP0890-20130614|19740_1  96 KWTKKAFLYAQRGRLEAAAEAFERAVTLTPnDAPYR 131
                  577789************************655554 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0018
    PF13371.1  11 ferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                  + +AL+ +   l laPd p+ +   G +l+q ++  +A++ + ++l+++p
  MMETSP0890-20130614|19740_1 148 PREALQPLREALTLAPDEPRALHALGNALHQCDASNEALHVYARALDKAP 197
                  5677777888899***********************************99 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.26
    PF13371.1  35 rGlllaqlgclaaAaedLeaflelcpdap 63 
                   + +l   g+ a A++ L+  l+ +p+ap
  MMETSP0890-20130614|19740_1 211 VATILLSKGERALARATLQKSLAIEPSAP 239
                  56667777777888888888888888776 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 1.1
    PF13371.1   6 lreedferALavverllllaPddpy 30 
                  + +e   ++L+++++l +  P++p+
  MMETSP0890-20130614|19740_1 295 ADPEAIRAMLQIIDLLDRAEPHAPS 319
                  5677788999999999999999886 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 6.8
    PF13371.1  36 Glllaqlgcl 45 
                  + ++ +l  +
  MMETSP0890-20130614|19740_1 367 ASAYLELASV 376
                  3333333222 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 4.3
    PF13371.1  34 DrGlll 39 
                  D G ++
  MMETSP0890-20130614|19740_1 518 DLGAAY 523
                  333333 PP

  == domain 7    score: -0.8 bits;  conditional E-value: 1.5
    PF13371.1  46 aaAaedLeafl.elcpdapd 64 
                    A+++L+af+ +l+p++ +
  MMETSP0890-20130614|19740_1 577 NDALAALNAFVnALSPEPLE 596
                  56999999999888888765 PP

>> PF04733.9  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0003      0.25     182     255 ..     181     258 ..     147     279 .. 0.81
   2 ?   -2.7   0.0       2.7   2.3e+03      77      99 ..     375     397 ..     365     404 .. 0.64
   3 ?   -1.4   0.1       1.1   9.6e+02     252     279 ..     479     506 ..     473     509 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0003
                  HHHHHHHHHHHHHHH.....S---HHHH---HHHHHH---HHHH---HHHHHHH----HHHHHHHHHHHHH----HHHH CS
    PF04733.9 182 kiqdAyyifqelsek.....ykstplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevs 255
                    ++A++++    +k     ++++  lln  A + l  g+ + A   L+++L  ++  + tL Nl  a+     ++ + 
  MMETSP0890-20130614|19740_1 181 ASNEALHVYARALDKapgneFPPNAPLLNNVATILLSKGERALARATLQKSLAIEPSAPGTLFNLAMATYSEACET-AA 258
                  5689999998877764444488999****************************************88766555553.33 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.7
                  H-STTHHHHHHHHHHHHHS---- CS
    PF04733.9  77 nspsrkeeilaelkeeladseie 99 
                  + ++++++++++l++ +a  +++
  MMETSP0890-20130614|19740_1 375 SVQENRDQAISSLHKAIALLHEN 397
                  44456777777777777755544 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.1
                  HHHHHHHHHHHHHH-TT-HHHHHHHHHH CS
    PF04733.9 252 aevsernlsqlklshpehklvkdlneke 279
                  a +s+r+lsq+ + +p+ ++ ++ n+ +
  MMETSP0890-20130614|19740_1 479 ATSSQRSLSQITHDQPQPVFFRKRNKHD 506
                  57899************99998888765 PP

>> PF04546.8  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.4   0.00065      0.56      41     109 ..      47     115 ..      27     122 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00065
    PF04546.8  41 aeeeseddeeeeeddddddededeeeeseeadegpdpeearerFaelrkqyeklekalekegrkskkae 109
                  ++ e++dd ++++dddddd   d++++ +e+++  d     er a+l+++++k    +++ gr +++ae
  MMETSP0890-20130614|19740_1  47 MANEDDDDWDDDDDDDDDDLTGDDDDALDESSNDTDTDSDEERSARLAQKWTKKAFLYAQRGRLEAAAE 115
                  333333333333333344444444445666666677777777777777777777777777777666555 PP

>> PF03344.10  Daxx Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.9    0.0055       4.7     445     487 ..      48      90 ..      30     113 .. 0.57
   2 ?    8.8   1.3   0.00052      0.44     503     633 ..     381     510 ..     355     540 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0055
   PF03344.10 445 aekeedeeddekeeedkseeeeeeeeeeeeeeeadneeeedle 487
                  a++++d+ dd+++++d++  +++++  +e  +++d +++e+  
  MMETSP0890-20130614|19740_1  48 ANEDDDDWDDDDDDDDDDLTGDDDDALDESSNDTDTDSDEERS 90 
                  3333343333333344444444444444444444444444433 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00052
   PF03344.10 503 eekndevakgirvseeqqkressvqpespk.eepqepeavdaekegeesdeellaeeeplsshtelesvatveerdisskrklspepvstsleedsavvisetengnvsastpqeeqeeeerkRkrkeeves 633
                  ++  ++  k i + +e+q+ +++++ ++p+  +++   a d   + ++ ++e+++ee+ ++   ++ s  t+++r++ss++k + + +    ++ s++  +++ + ++s+ t  + q+   rkR++++ +++
  MMETSP0890-20130614|19740_1 381 DQAISSLHKAIALLHENQQDGENEKVHDPSfISSSSIAASDLLPSTNQPKTEITKEETSSETSPQIRSSITSSKREASSSKKFTRPFLLGGKNRISST--ATSSQRSLSQITHDQPQPVFFRKRNKHDATAA 510
                  22345566666444444444444444444313333444556666666667777777776666666666666666666666666555555555544444..55555556666666666666666666554444 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.7   3.4e-05     0.029      88     142 ..      42      94 ..      36     149 .. 0.61
   2 ?    0.5   0.6      0.31   2.7e+02     128     177 ..     397     459 ..     343     519 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.4e-05
    PF05285.7  88 eegleseedddeeWdvdsdeededeDeegewvdvesd.eeeessDsedeeeesee.e 142
                  e+g +  ++dd +W  d+d++d+d+D  g+  d  ++  ++ ++Ds++e +   +  
  MMETSP0890-20130614|19740_1  42 EDGAPMANEDDDDW--DDDDDDDDDDLTGDDDDALDEsSNDTDTDSDEERS--ARlA 94 
                  55667788899999..44555555554333333333212233444444433..3322 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.31
    PF05285.7 128 essDsedeeeesee..................eeeeeesekkkkeesdeekseeeeeeaaeeeeeeak 177
                  +++D e+e+ ++ +                        + +  kee+ +e+s + +++ ++++ e+++
  MMETSP0890-20130614|19740_1 397 NQQDGENEKVHDPSfissssiaasdllpstnqP-----KTEITKEETSSETSPQIRSSITSSKREASS 459
                  378888888766668888888877777533220.....222222222333333333333222222222 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.2     0.016        13     267     308 ..      45      88 ..       8      94 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.016
    PF06524.7 267 vnygyesdddeeesaedydeeededddd..deeedetsenegek 308
                  +  ++e ddd +++++d+d++  +dddd  de++++t+++  e+
  MMETSP0890-20130614|19740_1  45 APMANEDDDDWDDDDDDDDDDLTGDDDDalDESSNDTDTDSDEE 88 
                  34556666666666666666555555551144455555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       738  (0.0539789); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.21u 0.38s 00:00:01.59 Elapsed: 00:00:00.98
# Mc/sec: 1484.27
//
Query:       MMETSP0890-20130614|19758_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-22   78.3   0.0      1e-12   47.1   0.0    1.9  2  PF13475.1 Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   7.6e-17     1e-12       6      49 .]       2      45 ..       1      45 [. 0.97
   2 !   34.2   0.0   8.2e-13   1.1e-08       1      35 [.      22      56 .]      22      56 .] 0.98

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 7.6e-17
    PF13475.1  6 leavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                 l+av+kng al y++++Lk D +++l+Av+q+g+al+ya + L+
  MMETSP0890-20130614|19758_1  2 LAAVQKNGRALIYADPKLKADPDFILAAVQQYGHALKYAGPKLQ 45
                 78**************************************9986 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 8.2e-13
    PF13475.1  1 DrEivleavkkngsalkylseeLknDkeivlkAvk 35
                 D +++l+av+++g alky+ ++L+ D  ivl+Av+
  MMETSP0890-20130614|19758_1 22 DPDFILAAVQQYGHALKYAGPKLQADPKIVLAAVQ 56
                 89*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 200.29
//
Query:       MMETSP0890-20130614|19763_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1455  (0.106422); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:01.02
# Mc/sec: 1487.15
//
Query:       MMETSP0890-20130614|19817_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 610.39
//
Query:       MMETSP0890-20130614|19830_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.6   0.2     0.0034   17.2   0.1    1.8  2  PF06013.7 Proteins of 100 residues with WXG
  ------ inclusion threshold ------
      0.083   13.1   0.1         13    6.1   0.0    3.5  3  PF04102.7 SlyX


Domain annotation for each model (and alignments):
>> PF06013.7  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     5e-07    0.0034       6      47 ..     225     266 ..     220     269 .. 0.93
   2 ?   -3.4   0.0       1.3     9e+03      53      77 ..     287     311 ..     280     316 .. 0.58

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5e-07
    PF06013.7   6 peelrqaakrfqkaaeelesilqrlkaqidalqsgWsGaaad 47 
                   ++lrq+ +++    ++le+++++l++++++l ++W G+a++
  MMETSP0890-20130614|19830_1 225 LDDLRQTVATIVMRLSTLEGRQRALQGKMAKLDGAWGGDASQ 266
                  5789************************************97 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
    PF06013.7  53 feewkqaaeklveaLeeisealkqa 77 
                  f  ++ ++  l++  +++ + l ++
  MMETSP0890-20130614|19830_1 287 FGSLRGQFFSLAHSIDKLDKRLAAI 311
                  5555555556666555555555554 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.73     5e+03      42      60 ..     134     152 ..     133     155 .. 0.73
   2 ?    6.1   0.0    0.0019        13      17      54 ..     222     258 ..     218     268 .. 0.87
   3 ?    2.7   0.0     0.021   1.5e+02      30      54 ..     297     321 ..     269     341 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.73
    PF04102.7  42 rllaerlkeleessnease 60 
                  r l+erl+++ ++s ea++
  MMETSP0890-20130614|19830_1 134 RELSERLQKVLSNSFEAES 152
                  5789999999877766665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0019
    PF04102.7  17 edtieeLNevvaeqqkeidrlqrqlrllaerlkelees 54 
                  e ++++L ++va+  ++++ l+ + r+l+ ++ +l+  
  MMETSP0890-20130614|19830_1 222 EAVLDDLRQTVATIVMRLSTLEGRQRALQGKMAKLD-G 258
                  8899****************************9988.4 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.021
    PF04102.7  30 qqkeidrlqrqlrllaerlkelees 54 
                    + id+l ++l+++++rl   ++ 
  MMETSP0890-20130614|19830_1 297 LAHSIDKLDKRLAAIERRLGGSGSG 321
                  5678999999999999999887733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 1109.42
//
Query:       MMETSP0890-20130614|19863_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.32s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 129.97
//
Query:       MMETSP0890-20130614|19917_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   17.1   0.1     0.0085   15.8   0.0    1.7  2  PF07647.12 SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
       0.11   12.5   0.2       0.22   11.6   0.1    1.5  1  PF00536.25 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.64   4.4e+03       9      24 ..     132     147 ..     130     157 .. 0.60
   2 !   15.8   0.0   1.2e-06    0.0085       6      48 ..     191     233 ..     186     240 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.64
                  HHHHHHHT--CCSHHH CS
   PF07647.12   9 vaeWLrsiglkqYten 24 
                  + +WL+++  +q  + 
  MMETSP0890-20130614|19917_1 132 LLSWLDEVSPRQTRQQ 147
                  6678888765555444 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.2e-06
                  HHHHHHHHHHT--CCSHHHHHHHTS-SCTCCCSSCHHHHHCCC CS
   PF07647.12   6 ledvaeWLrsiglkqYtenFrdqgitggelllrlteedLkrlG 48 
                  + ++  WL + gl+  + ++ + git +  l++lte++L  l+
  MMETSP0890-20130614|19917_1 191 QTSLSIWLAQRGLQSVEGKLAQLGITRLADLAYLTEDELSSLN 233
                  668999*********************************5443 PP

>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.2e-05      0.22       6      60 ..     192     244 ..     187     247 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
                  SSHHHHHHHTT-GGGHHHH.HCT--SHHHHTT--HHHHHHH-------HHHHHHHH CS
   PF00536.25   6 edVgeWLesiglgqYvdnF.rageidgdallllteedLeklgvtllGHrkkIlssI 60 
                   +++ WL + gl+  + +  + g + +  l+ lte++L +l   +l + kk++ ++
  MMETSP0890-20130614|19917_1 192 TSLSIWLAQRGLQSVEGKLaQLGITRLADLAYLTEDELSSL---NLDPEKKLCFHL 244
                  57778************************************...558899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 861.30
//
Query:       MMETSP0890-20130614|19928_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-45  154.0   0.0    2.8e-45  153.8   0.0    1.1  1  PF02542.11 YgbB family


Domain annotation for each model (and alignments):
>> PF02542.11  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.0   2.1e-49   2.8e-45       2     142 ..      11     167 ..      10     168 .] 0.92

  Alignments for each domain:
  == domain 1    score: 153.8 bits;  conditional E-value: 2.1e-49
   PF02542.11   2 riGlGyDvHrl....kegrklilgGveiphe......kgllghSDgDvllHAlvDAllgalglgdiGelFpdtdekykgadsaklLeevvklvkkkgyeianvditiiaerpkis......pyreeireniakllgieesqvsvkattteklgftGr 142
                  r G+GyD+Hr+      g+++++gGv+++ +       g+++hSDgDv++H++vDA+lgalgl diG+lFpd+d++ kgads+++++e++k + ++gy ++n+d+t+i+++p+i+      + +  ir+n+a+ll+++es v++ka+t+ek++ +G+
  MMETSP0890-20130614|19928_1  11 RLGHGYDIHRMapieMAGQPVVIGGVKFDGSdapafeLGVEAHSDGDVVYHSVVDAILGALGLPDIGQLFPDNDPRLKGADSSIFMKEAYKRMDDRGYFVGNCDVTLICQKPRINvehngqNPKTLIRANLADLLHMPESCVNLKARTHEKVDSVGE 167
                  89*********999888999*********977777779****************************************************************************732222244678***************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.84
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|19940_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 973.52
//
Query:       MMETSP0890-20130614|19954_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1053  (0.0770187); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:00.67
# Mc/sec: 1266.13
//
Query:       MMETSP0890-20130614|19966_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|20056_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 629.44
//
Query:       MMETSP0890-20130614|20077_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-22   78.5   2.8    1.7e-15   56.3   0.4    3.0  3  PF13414.1  TPR repeat
    9.9e-16   56.4   2.1    2.1e-05   23.7   0.0    3.6  3  PF00515.23 Tetratricopeptide repeat
    2.8e-12   45.4   7.7    0.00012   21.6   0.0    4.0  4  PF07719.12 Tetratricopeptide repeat
      1e-07   32.2   5.1    4.1e-06   27.2   0.3    3.5  4  PF13432.1  Tetratricopeptide repeat
    1.8e-07   30.9   2.7    0.00018   21.2   0.5    2.5  2  PF13424.1  Tetratricopeptide repeat
    5.6e-07   29.1   0.5    0.00025   20.9   0.0    2.9  2  PF13431.1  Tetratricopeptide repeat
    2.5e-06   26.8   0.8    4.4e-06   26.0   0.6    1.4  1  PF08603.6  Adenylate cyclase associated (CAP) C terminal
    3.2e-06   27.0   0.8    7.4e-06   25.8   0.6    1.7  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    3.7e-05   23.0   0.1       0.27   10.9   0.0    3.3  4  PF13181.1  Tetratricopeptide repeat
    0.00032   20.4   3.3     0.0075   16.0   0.3    2.7  3  PF13371.1  Tetratricopeptide repeat
      0.001   18.0   1.1      0.001   18.0   0.7    2.5  2  PF13429.1  Tetratricopeptide repeat
     0.0061   16.9   7.2      0.086   13.4   0.1    3.7  2  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   14.8   1.6       0.96    9.2   0.1    2.7  2  PF04212.13 MIT (microtubule interacting and transport) domain
       0.05   13.9   0.2         10    6.7   0.1    3.1  2  PF07721.9  Tetratricopeptide repeat
      0.062   12.7   0.3       0.12   11.8   0.2    1.4  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       2.1   1.9e+03      53      67 ..      62      75 ..      44      77 .. 0.66
   2 !   56.3   0.4   1.8e-18   1.7e-15       5      69 .]     275     343 ..     271     343 .. 0.88
   3 !   30.1   0.0   2.6e-10   2.4e-07      19      69 .]     328     377 ..     327     377 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.1
    PF13414.1 53 dyeeAledyekAlel 67
                 ++ e +e++e+A++l
  MMETSP0890-20130614|20077_1 62 KWNE-REAAEQAIKL 75
                 3444.5666777765 PP

  == domain 2    score: 56.3 bits;  conditional E-value: 1.8e-18
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae.....lyynlAlaylklgkdyeeAledyekAleldP 69 
                    +++Gn +f++++y +Ai +y+ Al+ + ++a      l++n+A+++lklg ++++Al+d+++A+ ldP
  MMETSP0890-20130614|20077_1 275 IERNKGNDAFSKREYTQAILHYTLALDASTETAAkdkavLLANRAACWLKLG-HPDKALTDATQAVDLDP 343
                  5799***********************975544444444*************.9***************9 PP

  == domain 3    score: 30.1 bits;  conditional E-value: 2.6e-10
    PF13414.1  19 ydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +d+A+   ++A++ldp+++++y++ +la+  l  +y++Al  +  A +l P
  MMETSP0890-20130614|20077_1 328 PDKALTDATQAVDLDPDYPKAYFRKGLALHALQ-RYKDALPVLGTAQKLEP 377
                  69*****************************96.8*****99999999887 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00044       0.4       6      28 ..     278     300 ..     273     302 .. 0.92
   2 !   23.7   0.0   2.3e-08   2.1e-05       2      34 .]     313     345 ..     312     345 .. 0.94
   3 !   20.3   0.1   2.8e-07   0.00025       1      34 []     346     379 ..     346     379 .. 0.97

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00044
                  HHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekAL 28 
                  n+Gn  +++ +y +A+ +y  AL
  MMETSP0890-20130614|20077_1 278 NKGNDAFSKREYTQAILHYTLAL 300
                  9*******************998 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 2.3e-08
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                    l n++++ lklg +d+Al +  +A+ l+P++
  MMETSP0890-20130614|20077_1 313 VLLANRAACWLKLGHPDKALTDATQAVDLDPDY 345
                  5789***************************97 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 2.8e-07
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                  +ka++++G+a++ l++y++Al     A +l+P+n
  MMETSP0890-20130614|20077_1 346 PKAYFRKGLALHALQRYKDALPVLGTAQKLEPKN 379
                  69******************************97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       7.6     7e+03      21      30 ..      66      75 ..      66      75 .. 0.80
   2 !    6.7   0.0    0.0075       6.8       6      29 ..     278     301 ..     275     303 .. 0.92
   3 !   21.6   0.0   1.3e-07   0.00012       3      34 .]     314     345 ..     312     345 .. 0.94
   4 !   19.6   0.1   5.6e-07   0.00051       1      34 []     346     379 ..     346     379 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 7.6
                 HHHHHHHHHH CS
   PF07719.12 21 leafekAlel 30
                 +ea e+A++l
  MMETSP0890-20130614|20077_1 66 REAAEQAIKL 75
                 5788999987 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0075
                  HHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                  n G+ ++ +++y +A+ ++  Al 
  MMETSP0890-20130614|20077_1 278 NKGNDAFSKREYTQAILHYTLALD 301
                  789*****************9996 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 1.3e-07
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  +l n++ +++klg++++Al +  +A+ ldP++
  MMETSP0890-20130614|20077_1 314 LLANRAACWLKLGHPDKALTDATQAVDLDPDY 345
                  689***************************95 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 5.6e-07
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++a+++ Gla+ +l++y++Al  +  A +l+P+n
  MMETSP0890-20130614|20077_1 346 PKAYFRKGLALHALQRYKDALPVLGTAQKLEPKN 379
                  689*****************************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       5.6   5.1e+03      43      60 ..      27      44 ..      19      50 .. 0.64
   2 ?   -2.6   0.2       9.9     9e+03      16      31 ..      52      69 ..      37      76 .. 0.56
   3 !   15.1   0.3   2.7e-05     0.025       3      65 .]     279     346 ..     277     346 .. 0.92
   4 !   27.2   0.3   4.5e-09   4.1e-06       8      63 ..     323     378 ..     323     380 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5.6
    PF13432.1 43 rlgrldeAaallraalal 60
                 + ++ d+A+ l+ra l++
  MMETSP0890-20130614|20077_1 27 EIKENDAALGLDRAPLSA 44
                 456677777888776644 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 9.9
    PF13432.1 16 Alaaleaalala..Peaa 31
                 A + l+++++++   eaa
  MMETSP0890-20130614|20077_1 52 AHQELKEVRKKWneREAA 69
                 445555555555443344 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 2.7e-05
    PF13432.1   3 lArallraGdydeAlaaleaalala.....PeaaeallllaeallrlgrldeAa.allraalalaPddp 65 
                  ++++++  ++y +A+ ++  al++       + a  l ++a + l+lg++d+A+  + +a  +l+Pd+p
  MMETSP0890-20130614|20077_1 279 KGNDAFSKREYTQAILHYTLALDAStetaaKDKAVLLANRAACWLKLGHPDKALtDATQAV-DLDPDYP 346
                  7999************************998899999*****************7777776.****997 PP

  == domain 4    score: 27.2 bits;  conditional E-value: 4.5e-09
    PF13432.1   8 lraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  l++G++d+Al    +a++l+P+++ a+++ + al++l r+++A+ +l  a++l P+
  MMETSP0890-20130614|20077_1 323 LKLGHPDKALTDATQAVDLDPDYPKAYFRKGLALHALQRYKDALPVLGTAQKLEPK 378
                  689*****************************************998888888886 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.5     2e-07   0.00018      10      76 ..     278     342 ..     270     344 .. 0.87
   2 !    9.9   0.0   0.00066       0.6       2      34 ..     343     375 ..     342     387 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2e-07
    PF13424.1  10 nlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  n ++  + +++y +A+ +y  al+        +  d a++l n a ++l+lg  d+Al    +A++++
  MMETSP0890-20130614|20077_1 278 NKGNDAFSKREYTQAILHYTLALDAsT---ETAAKDKAVLLANRAACWLKLGHPDKALTDATQAVDLD 342
                  7788888999*************9944...3445688****************************997 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00066
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel 34 
                  pd+ +++++ +l+l++l++y++Al  + +a +l
  MMETSP0890-20130614|20077_1 343 PDYPKAYFRKGLALHALQRYKDALPVLGTAQKL 375
                  566677777778878888888887777777665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.022        20      10      33 ..     309     332 ..     299     333 .. 0.90
   2 !   20.9   0.0   2.7e-07   0.00025       4      33 ..     337     366 ..     335     367 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.022
    PF13431.1  10 PnnadaynnLAelllnnGdleeAe 33 
                  ++ a+++ n+A ++l++G +++A+
  MMETSP0890-20130614|20077_1 309 KDKAVLLANRAACWLKLGHPDKAL 332
                  67899****************996 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 2.7e-07
    PF13431.1   4 kaleldPnnadaynnLAelllnnGdleeAe 33 
                  +a++ldP+++ ay++++++l++++++++A+
  MMETSP0890-20130614|20077_1 337 QAVDLDPDYPKAYFRKGLALHALQRYKDAL 366
                  89**************************96 PP

>> PF08603.6  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.6   4.8e-09   4.4e-06      31     154 ..      96     234 ..      69     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4.8e-09
                  TT-EEEE-EEEEEEEEEE--BSEE....EEEEEEEEEEEES-B-..---EEEEEE----EESS--SEEEEES-B---EE--SCGT.......T-EEEEES--S-EEEE---....-TT--EEEE----EEEEE----EEEE CS
    PF08603.6  31 lkqsvyifkCknstiqikgKvnai....sldnckkvslvvdslv..ssvevvnsksvkvqvlgkvptisidktdgvqiyLskesl.......eteivssksseiNinvpte....edgdykElalpeqfktkidkgklvte 154
                   k +  ++ C  ++i+++  +  +    ++++c+ +++++d     s v+v ++k+v++ v++k+ ti++d ++++ i   +++l         +i+ + ++++ in+  +    +d+d ++    +qf t++ ++ l+te
  MMETSP0890-20130614|20077_1  96 GKRVAALYGCMRTKIRLTPALSEVliklFIEDCEDLEVLLDCSLttSFVDVSRCKRVNIIVNQKLHTIQCDLSENIIISWASANLfdaaqpeGPRIYHAGCKKLCINAGANrsitNDDDCTDK--EQQFLTHLIDNTLITE 234
                  5666677788888887766555441111789*********97643388*************************99887655555555444435689999999999998544457788888887..5899999977777776 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.6   8.2e-09   7.4e-06       2      83 ..     286     371 ..     285     372 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 8.2e-09
                  TT-HHHHHHHHHHHCCC-ST-H..HHHCHHH.HHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2   2 qhnyknAlflaekllaespkdp..edaylya.lAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavLek 83 
                  +++y +A++++ ++l  s ++   ++a+l+a  A c +++g++++A+   ++  +ld+  +++ + ++ +l++l++y++A+ vL+ 
  MMETSP0890-20130614|20077_1 286 KREYTQAILHYTLALDASTETAakDKAVLLAnRAACWLKLGHPDKALTDATQaVDLDPDYPKAYFRKGLALHALQRYKDALPVLGT 371
                  679**************987335688888877**************9999999*******9999999****************985 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0        10   9.1e+03       7      16 ..     272     281 ..     271     282 .. 0.82
   2 ?   -1.9   0.0       3.8   3.4e+03      13      30 ..     285     302 ..     283     304 .. 0.82
   3 !    8.1   0.0    0.0024       2.2       4      34 .]     315     345 ..     311     345 .. 0.92
   4 !   10.9   0.0    0.0003      0.27       2      33 ..     347     379 ..     346     380 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 10
                  ---HHHHTT- CS
    PF13181.1   7 lGdiYrqlGd 16 
                  + +i+r++G+
  MMETSP0890-20130614|20077_1 272 QVQIERNKGN 281
                  6689999998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.8
                  HTT-HHHHHHHHH---HH CS
    PF13181.1  13 qlGdydkAkeylekalel 30 
                  ++ +y +A+ ++  al+ 
  MMETSP0890-20130614|20077_1 285 SKREYTQAILHYTLALDA 302
                  677899999999999986 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0024
                  TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkprn 34 
                  + n++ + ++lG  dkA+    +a++l+p++
  MMETSP0890-20130614|20077_1 315 LANRAACWLKLGHPDKALTDATQAVDLDPDY 345
                  67999999*********************86 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.0003
                  --TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp.r 33 
                  kay+++G+++  l +y+ A+  l  a +l p +
  MMETSP0890-20130614|20077_1 347 KAYFRKGLALHALQRYKDALPVLGTAQKLEPkN 379
                  79***************************9955 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.7   4.3e+03      27      67 ..      31      71 ..      27      76 .. 0.59
   2 !   12.9   0.1   7.2e-05     0.066      27      66 ..     310     349 ..     291     352 .. 0.88
   3 !   16.0   0.3   8.2e-06    0.0075      10      69 ..     327     387 ..     326     393 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 4.7
    PF13371.1 27 ddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdael 67
                 +d+ +  Dr+ l a   + + A ++L    ++  ++++ae+
  MMETSP0890-20130614|20077_1 31 NDAALGLDRAPLSAAEADDQIAHQELKEVRKKWNEREAAEQ 71
                 56666667776666666666666666655555555555555 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 7.2e-05
    PF13371.1  27 ddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdae 66 
                  d + ++  r+ +  +lg++  A++d +++++l+pd p a+
  MMETSP0890-20130614|20077_1 310 DKAVLLANRAACWLKLGHPDKALTDATQAVDLDPDYPKAY 349
                  56667788***************************99886 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 8.2e-06
    PF13371.1  10 dferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp.dapdaelir 69 
                  ++++AL  +   + l+Pd p  +   Gl+l+ l+++  A+  L ++ +l+p + + ae+ir
  MMETSP0890-20130614|20077_1 327 HPDKALTDATQAVDLDPDYPKAYFRKGLALHALQRYKDALPVLGTAQKLEPkNKQVAEAIR 387
                  6899***********************************************8777777776 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.2   1.1e+03     195     216 ..      52      73 ..      20      82 .. 0.77
   2 !   18.0   0.7   1.1e-06     0.001     137     230 ..     303     396 ..     287     399 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.2
    PF13429.1 195 rraelrealaawkaeaesdsaL 216
                   ++el+e+ ++w++++++++a+
  MMETSP0890-20130614|20077_1  52 AHQELKEVRKKWNEREAAEQAI 73 
                  4567888888888777666655 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.1e-06
    PF13429.1 137 eekeaaeqsalfllaraellrqegqkkkAlrllrralalkpassdl..raallWlliDlgrraelrealaawkaeaesdsaLwgpfaaayllLgrp 230
                  + + aa++ a  l+ ra+  ++ g+++kAl+++ +a++l+p+  ++  r++l    + + ++a    +l + ++ + +++++ ++  +a+++L+r+
  MMETSP0890-20130614|20077_1 303 STETAAKDKAVLLANRAACWLKLGHPDKALTDATQAVDLDPDYPKAyfRKGLALHALQRYKDAL--PVLGTAQKLEPKNKQVAEAIRFAEMRLARG 396
                  456778999999999**************************97654116666555554444443..777777777788888888888888888776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   9.5e-05     0.086       3      42 ..     314     353 ..     312     355 .. 0.90
   2 !    9.8   0.2    0.0013       1.2       1      38 [.     346     383 ..     346     395 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.5e-05
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLa 42 
                  +l+ +a+  l lG+pd+A+  + +a+ l+Pd + a+++ +
  MMETSP0890-20130614|20077_1 314 LLANRAACWLKLGHPDKALTDATQAVDLDPDYPKAYFRKG 353
                  567899999*************************998876 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0013
    PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaeal 38 
                  p+a+ + + al al+++++A+ +l  a +l P++ ++ 
  MMETSP0890-20130614|20077_1 346 PKAYFRKGLALHALQRYKDALPVLGTAQKLEPKNKQVA 383
                  6799999*************************997665 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.051        47      18      33 ..     286     301 ..     267     323 .. 0.63
   2 ?    9.2   0.1     0.001      0.96       4      51 ..     330     386 ..     328     389 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.051
                  TT-HHHHHHHHHHHHH CS
   PF04212.13  18 agkyeeAlelYkeAle 33 
                  + +y +A+ +Y+ Al+
  MMETSP0890-20130614|20077_1 286 KREYTQAILHYTLALD 301
                  2266666666666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.001
                  HHHHHHHHHHHHHH........TT-HHHHHHHHHHHHHHHHHHHHHC.TTHHCHHHH CS
   PF04212.13   4 kAlelikkAveaDe........agkyeeAlelYkeAlelLlqalkye.pnperreal 51 
                  kAl  +++Av+ D         +g    Al+ Yk+Al +L +a k e +n++  ea+
  MMETSP0890-20130614|20077_1 330 KALTDATQAVDLDPdypkayfrKGLALHALQRYKDALPVLGTAQKLEpKNKQVAEAI 386
                  7777788888888878877777889999*******************6677777776 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.011        10       1      22 [.     312     333 ..     312     333 .. 0.91
   2 ?    4.0   0.0     0.087        79       8      24 ..     353     369 ..     346     371 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.011
                  HHHH---HHHHHH-------HH CS
    PF07721.9   1 arallaLArallalGdldeAra 22 
                  a++l+++A  +l lG++d A++
  MMETSP0890-20130614|20077_1 312 AVLLANRAACWLKLGHPDKALT 333
                  57899***************85 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.087
                  HHHHHH-------HHHH CS
    PF07721.9   8 ArallalGdldeArall 24 
                  + al+al ++ +A+ +l
  MMETSP0890-20130614|20077_1 353 GLALHALQRYKDALPVL 369
                  88***********9887 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00013      0.12      41      98 ..     245     302 ..     242     309 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00013
                  H---EEEE--SSTTHHHHHHH----BSSS.-TTTCTTSB-B-----HHHHHHHHHHHH CS
   PF01262.16  41 glgaevvaldkrperleqveslgaefvevdrseeeerkeydkeeseefiesntellae 98 
                   lga+  +ld+ ++rle   s  ae+ +v+++ ++ ++++ k e+ + i ++t +l+ 
  MMETSP0890-20130614|20077_1 245 LLGATQRDLDQEQTRLERQASRQAEQNQVQIERNKGNDAFSKREYTQAILHYTLALDA 302
                  69***************************9999999988************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       942  (0.0688999); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:00.70
# Mc/sec: 1386.46
//
Query:       MMETSP0890-20130614|20105_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      417  (0.0305003); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.86
# Mc/sec: 529.43
//
Query:       MMETSP0890-20130614|20112_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 659.00
//
Query:       MMETSP0890-20130614|20106_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-07   30.1   0.0    1.3e-06   27.9   0.0    2.0  2  PF01522.16 Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> PF01522.16  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.082   1.1e+03      91     112 ..      16      38 ..       5      45 .. 0.82
   2 !   27.9   0.0   9.4e-11   1.3e-06      18     124 .]      79     190 ..      71     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.082
                  HHH---.---EE------B-HHH CS
   PF01522.16  91 rkalgr.eprlfryPygeasanv 112
                  +++l+r +p ++ +P+g+  a++
  MMETSP0890-20130614|20106_1  16 ESILKRgPPEGLSWPGGQKLAVY 38 
                  56788889999******988776 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 9.4e-11
                  ---HHHHHHHHHHTT----EEE---HHHH-HHHHHHHHH---------SS--....-GGGS-HHHHHHHHHHHHHHHHHH---.---EE------B-HHHHHHHHH---EEB CS
   PF01522.16  18 rdntteilpvLkkygvkatffvigglvedypdevremaasGhevgnHtinhs....nlkalseeqvrreiervkdalrkalgr.eprlfryPygeasanvlevlrelgfayv 124
                  r +  ++l++++  +++    v+g  ++  p+++++ +a+G e+  H+++      +l + +e +  r+  r+ + + k + + +p+++  P  + s ++l+ l +  ++y+
  MMETSP0890-20130614|20106_1  79 RVGAWRLLELFDDLKMPCSALVNGAITQHCPELIQAHVARGDEIVGHGWTNAekqaDLDEYTEVECIRQTTRSLQPFLKTVSNdCPTGWLGPWISQSYRTLDLLVQQKYQYH 190
                  5667899*******************************************9966667789999888888877766655555554********************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.73
# Mc/sec: 1020.91
//
Query:       MMETSP0890-20130614|20101_1  [L=1026]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.3e-165  551.0  34.9   5.6e-162  539.7  24.2    3.0  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
    2.2e-11   43.8   0.0    7.1e-11   42.2   0.0    2.0  1  PF01399.22 PCI domain


Domain annotation for each model (and alignments):
>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  539.7  24.2  8.2e-166  5.6e-162       9     591 ..      35     749 ..      28     753 .. 0.90

  Alignments for each domain:
  == domain 1    score: 539.7 bits;  conditional E-value: 8.2e-166
    PF05470.7   9 eessdeedtkrVVksaKdKrfeeltsiiktiknakkikdlvklleeFdklnkalekaks.vkenvktPrlyikvlaeledflnelwedkeakkklsknnakalntlkQklkKynkqfeddikkyredPeseeeeeeedededdegedeedeeedsvkkteevkksses....................................................................klkeekeeeedeeeeeeklskkdrkeeklmfkkk..eeitvdvvikklkeileaRgkkttdrseqielleeLlkiaeekaq...kvkikfsiisarfdvna..klseymkievwkkcleeinslldiLvananivvseevade.............veeledetkk............dadgvi..rvrGsilafverlddEfvksLqniDpHsndYverLkdEkslvaliervqkYlErtgdskevarvylkriehiYYKpeeviea..............................eeekiiasfivskelvkekeataedsrklmdkLckliykddeerirtrAiLchiyhhAlhdkfvkArDllLmShlQdnidhaDistqiLyNRtmvqlGlcAFrqglikeahqaLsdllstgrvkElLaQgvlqsrqhektaeqeklerrrqlPyHmhiNleLlecVyLvcamLlEiPnmaaa 591
                  ++s+  +++ r+VksaKd+ +e + + + +ikn +ki+d++ +++eF++lnk+++kak  + +++++Pr+yi++l+el dfl e+++dke++kk+s++n++aln +k  l++ nk++e++i++yr++P++++ +++ d+ +d++++d++++++d+++++e  ++  +                                                                      lk  ++  + e+  e+ ++k +  ++  +f k+  e+it + + kkl e+++ Rg+k+td +e+++ l  L++ +  +     ++  ++ +i+a+ dv +  ++ +ym+ + w++cle + +++++L an++i++    +de             + + ed+  +            ++dg+i  rv G+il+f+ rl+dE++ksLq i pH+++Yv+rL+dE+ lv+++  +q+Y+Er  d+k++a ++l r+eh+YYK e+ +                                +e +i +++      +++ +  + d ++++ +Lc+++yk++++r +trA+Lch+ hhAlh +f++ rDllLmShlQd i  +Di+t+iLyNR+mv lGlcAFr+gli +ah +L ++ s  rvkElLaQgv++ r+++k++eqek errrq PyHmhiNl+Llec +L++amLlE+Pnma  
  MMETSP0890-20130614|20101_1  35 SDSESSDEGERIVKSAKDRAWEGMRNEVTKIKNSMKINDWTGIQNEFESLNKMIDKAKMlIIKEGGVPRFYIRILTELGDFLLEALKDKEGQKKMSAANGRALNRMKLALRRHNKNYENEINEYRKNPDEDSVDDDSDDSDDSDESDSDESSSDDSSESEDDDDDDDDddddakkktqkdladmdsddwasssedeesssesevetgelkgrarwlksatvttgktkqkktqqeriDLKAAEKRRKAEALAEKAFTKAETATKATVFGKPleENITAEQFDKKLLEVVAHRGRKGTDGRELVAALVVLTERSLLQFDigrQLSTLMHLIAAQLDVGTrgGIDDYMDTQAWRQCLERVMKVVQVLAANPKIILITVGDDEladlhvvaqatktIKKMEDDEIEistpkekqdpqpKEDGTIeaRVAGNILTFISRLEDEYLKSLQRINPHTQEYVSRLQDEAPLVQVACMAQSYFERVSDFKAAAILALLRVEHVYYKHESIATSvrqaqayrakwgrkadahpacsknefipptKEYNIANTHPAAWLGSPSVHIDPIDDAAVVKSLCEYVYKHGDDRAKTRALLCHVAHHALHGRFAQGRDLLLMSHLQDTIYMSDIETHILYNRAMVFLGLCAFRHGLIADAHACLAEICS-MRVKELLAQGVQNGRFNDKNSEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAMD 749
                  4567778899***********************************************99999*********************************************************************999998888888888777777777777777666555568899999*******************************************************9998867777777788888999999999999999998853378***********************************99988877788***************997799****************************987543333211111111111112222222111222333445556566664449****************************************************************************998779999*******************999999988888888888888899999999999*******************************************************************************************85.7**********************************************************975 PP

>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     1e-14   7.1e-11       2     104 ..     773     904 ..     772     905 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1e-14
                  XXXXXXXXXXXXXXXXXXXXXXXX........................XXXXXXX................------HHHHHHHHHHHHH....S-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE-- CS
   PF01399.22   2 sysdllkalrsgnlsgfseelkdl...................eeelladdglsq................llesLekkvrerllrqvsk....iyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfk 104
                  +++    +++++ ++g++e+ +d+                                               + + +  k++ + lr +       y+sisl+ l k ++l+++ ++ i++k++ +gelra++dqp+ ++v++
  MMETSP0890-20130614|20101_1 773 HFRKYMDIYNRQVFTGPPENTRDHllaaakalmrgdwrkcadlV----------LgldvwnlvpginaaneVKQVVAAKIKSEGLRAYLFatsnAYDSISLDVLCKSFELDQKITHAIISKMMINGELRASWDQPTNTLVLH 904
                  56667777888889999999999988888777755544433330..........3445555666666688888888888888888776668888*********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1260  (0.0921592); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.13u 0.47s 00:00:02.59 Elapsed: 00:00:01.38
# Mc/sec: 1781.64
//
Query:       MMETSP0890-20130614|20119_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-15   55.2   0.0    1.2e-14   54.1   0.0    1.5  1  PF00651.26 BTB/POZ domain


Domain annotation for each model (and alignments):
>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   8.7e-19   1.2e-14      13     109 ..     261     374 ..     257     376 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 8.7e-19
                  EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTT................TTTT-SEE.......EEEETTS-HHHHHHHHHHHCCSEEEC..ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
   PF00651.26  13 vtlvvgdgkefkahkavLaarSpyFkalftgg................eieestvs.......eieledvepevfealLefiYtgeleit.seenveelLaaadllqiprlkdaceeflke 109
                  vt++v+ gk++kahk+ L arS+yFk++ +++                +              ei +   ++++f  +L+fiY+g  + +   e +++++++a+ + +  l   c +++++
  MMETSP0890-20130614|20119_1 261 VTFLVD-GKRIKAHKFLLTARSQYFKTMINNHqrqfgtsnqissnddhS------InpnksgnEIVITGADYKTFLCVLRFIYSGGDPEQiPPERIVDVFKLASEYTLRPLAIRCLDIMEN 374
                  899***.8**************************998877776444430......146666779********************965554669**********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.72
# Mc/sec: 1584.26
//
Query:       MMETSP0890-20130614|20121_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   28.2   0.0    1.6e-06   27.5   0.0    1.3  1  PF01370.16 NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-10   1.6e-06     135     227 ..      35     141 ..      19     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.2e-10
                  --SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT.................-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
   PF01370.16 135 gplspYaaaKlageklveayaeeyglnaiilrlfnvyGpr..............nfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgd 227
                  +p s Y  +K     l + ya+  g++++ l    v G +              ++d++   v+++++ ++    ++t++g+G q R f+++ D a+++ l+++++ 
  MMETSP0890-20130614|20121_1  35 YPGSVYHTTKCLDALLFQFYAKNDGVRITDLHQGIVWGTNtkltamddrllnrfDYDGDYGTVLNRFLMQAALDVPLTVYGTGGQTRAFIHIADTAKCIQLAIDNPP 141
                  666668888888888888888888888888888888888888888888888878899999*******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 1094.89
//
Query:       MMETSP0890-20130614|20149_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-14   52.1   0.1    8.9e-14   51.1   0.0    1.6  2  PF05175.9  Methyltransferase small domain
    1.1e-11   44.6   0.0    1.9e-11   43.8   0.0    1.4  1  PF13659.1  Methyltransferase domain
      2e-11   44.3   0.0    3.9e-11   43.3   0.0    1.5  1  PF12847.2  Methyltransferase domain
    1.4e-05   24.6   0.0    2.2e-05   23.9   0.0    1.3  1  PF13847.1  Methyltransferase domain
     0.0003   19.8   0.0    0.00043   19.3   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0012   18.4   0.0     0.0026   17.3   0.0    1.6  1  PF13489.1  Methyltransferase domain
     0.0015   17.6   0.0     0.0056   15.7   0.0    1.8  2  PF02527.10 rRNA small subunit methyltransferase G
     0.0017   17.8   0.0     0.0022   17.4   0.0    1.2  1  PF01170.13 Putative RNA methylase family UPF0020
     0.0027   17.1   0.1     0.0059   16.0   0.0    1.5  2  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
     0.0031   17.8   0.0      0.007   16.7   0.0    1.7  1  PF08241.7  Methyltransferase domain
     0.0059   16.8   0.0       0.01   16.0   0.0    1.5  1  PF13649.1  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   13.9   0.0       0.03   13.4   0.0    1.2  1  PF00891.13 O-methyltransferase
      0.069   12.0   0.0       0.11   11.4   0.0    1.2  1  PF01596.12 O-methyltransferase


Domain annotation for each model (and alignments):
>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   8.4e-17   8.9e-14      31     155 ..      43     177 ..      23     188 .. 0.79
   2 ?   -3.9   0.0       6.6   6.9e+03      77      94 ..     270     287 ..     263     288 .. 0.59

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 8.4e-17
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EEE--------H......HH...HHHHHHHH---GGGB-----EEEEEETTSSHHHH.HHHH-- CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeveekkfdlivsNPPfhagka......te...levaerliaeAkkhLkegGeLllVanrklgyeel.leelfg 155
                   a+++lD+G+G+G+l++++ +  p++++++++ ++++ + a +n++   ++ ++ + ++     +++ fd+i++NPPf +  +      ++      +e+l+++    L+++G++++ a ++++ +++ l++l++
  MMETSP0890-20130614|20149_1  43 SAKRLLDIGTGTGILALMAHQVAPHMKIDALESHEQSASQAGENVTGSTIRVLHGRVQEFAVPQNKGIFDAIITNPPFFSSMKrkggpeKHadiSLPTEELLHAVDVLLTPDGRFFVLADARQKQNRIqLQNLAR 177
                  67789*********************************************99888888888888999**********75543311111022000335789999999999***********999999887666554 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6.6
                  H----.--EEE-STTTT- CS
    PF05175.9  77 anklenvevlasdlleev 94 
                  +++ e+v+v+++d+ +++
  MMETSP0890-20130614|20149_1 270 HHEKEEVHVHQEDGKKNI 287
                  333344888888877665 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.8e-14   1.9e-11       2     114 ..      45     160 ..      44     163 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.8e-14
    PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrd........lydafleaaarllkpgGvlvli 114
                   r+ld+g+G+G+++l+a + +   ++ ++E  +++a  a +n++      ++rv +g ++++a +  +g fd+++tnpP+  +++  ++ ++         ++++l+a   ll p+G++ ++
  MMETSP0890-20130614|20149_1  45 KRLLDIGTGTGILALMAHQVApHMKIDALESHEQSASQAGENVTGS----TIRVLHGRVQEFAVPQNKGIFDAIITNPPFFSSMK--RKGGPekhadislPTEELLHAVDVLLTPDGRFFVL 160
                  599*****************9999***********99999999765....68***********8889999**********95543..3333334667888888****************987 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.7e-14   3.9e-11       3     109 ..      45     159 ..      43     162 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 3.7e-14
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda..keelsllerfDavllkg.l..........tldallaldeprrvlealpkllkpggrlvi 109
                  kr+lD+G+GtG l+l +++ +p  k+++++ +e+s+++a en+     ++ i++l+g +  +  +++++ fDa++ +  +            +a ++l   +++l+a+  ll p+gr+++
  MMETSP0890-20130614|20149_1  45 KRLLDIGTGTGILALMAHQVAPHMKIDALESHEQSASQAGENV----TGSTIRVLHGRVqeFAVPQNKGIFDAIITNPpFfssmkrkggpEKHADISL-PTEELLHAVDVLLTPDGRFFV 159
                  799****************99**********************....99**********65555666666*******998777777665522222222.23444999999999*999986 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.1e-08   2.2e-05       3     110 ..      43     161 ..      42     193 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 2.1e-08
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle...esfDlvisnevl.............naladpq.kvlkeiervlkpggrlives 110
                  s++++lD+G+GtG l+l+++ ++ p +k+  ++  e++ + A e++   g + +++ +g+++e+   ++     fD +i+n ++             ++++ p  + l  +  +l+p+gr++v  
  MMETSP0890-20130614|20149_1  43 SAKRLLDIGTGTGILALMAH-QVAPHMKIDALESHEQSASQAGENVT--GST-IRVLHGRVQEFA--VPqnkGIFDAIITNPPFfssmkrkggpekhADISLPTeELLHAVDVLLTPDGRFFVLA 161
                  5789****************.99******9999***99999999866..777.99********44..3333699*******87777777777776664444443145557777788888887654 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.1e-07   0.00043     162     232 ..      44     117 ..      30     118 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.1e-07
    PF06325.8 162 geevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelNkvea.kleva.llkelpkekadvivaN 232
                   +++lD+GtG+GiLa+ a++++ + k+ a+   e++ + a eN+    ++  + +v+  +  ++k+ +d i+ N
  MMETSP0890-20130614|20149_1  44 AKRLLDIGTGTGILALMAHQVApHMKIDALESHEQSASQAGENVTGSTIRVlHGRVQeFAVPQNKGIFDAIITN 117
                  5689***************998356999***************9988887754444313333445778888877 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.5e-06    0.0026      23     120 ..      44     165 ..      28     217 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.5e-06
    PF13489.1  23 ggrvLDiGcGtGillellaengf..dvtgvDpspaaigk.................akqaqksqfdeedaaepagkfdlivar.evlehvpd...pe..........ellrqiaellkpgGylllstpnas 120
                   +r+LDiG+GtGil+ + ++  +  ++++ ++ +++ +                    +a           +++g fd i+ +  ++ +++    pe          ell ++  ll p+G +++    + 
  MMETSP0890-20130614|20149_1  44 AKRLLDIGTGTGILALMAHQVAPhmKIDALESHEQSASQagenvtgstirvlhgrvQEFA---------VPQNKGIFDAIITNpPFFSSMKRkggPEkhadislpteELLHAVDVLLTPDGRFFVLADARQ 165
                  589**********98877555333555555553322222444666665554433222222.........22366899988888788888886344447777777775666666667889999888777654 PP

>> PF02527.10  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.3e-06    0.0056      45     120 ..      42     115 ..      32     117 .. 0.83
   2 ?   -1.1   0.0      0.76     8e+02     130     170 ..     143     183 ..     139     199 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.3e-06
                  S-GGC..EEE--------HHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-TTT...TTTTT-BSEEE CS
   PF02527.10  45 lkekrskviDvGsGaGlPGipLaiarpelkltLleskekkiaFLeelkkelklenveivearaee...kqeeekydvit 120
                  ++ kr  ++D+G+G G+ +++   + p++k+  les+e+ +    ++ ++   + +++++ r++e    q++  +d+i+
  MMETSP0890-20130614|20149_1  42 YSAKR--LLDIGTGTGILALMAHQVAPHMKIDALESHEQSA---SQAGENVTGSTIRVLHGRVQEfavPQNKGIFDAII 115
                  34444..9**********************88888887665...69999999999**********99889999999987 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.76
                  HHHHHCCGB-----EEEEE----HHHHHTS-CCCCCEEEEE CS
   PF02527.10 130 ltelalkllksgglilalKGkkaedeleelekklqlskvev 170
                  l + +  ll + g++++l  ++++++  +l++     +++ 
  MMETSP0890-20130614|20149_1 143 LLHAVDVLLTPDGRFFVLADARQKQNRIQLQNLARPLGFHT 183
                  55566678999999999988888888777776665555554 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06    0.0022      39     125 ..      52     129 ..      29     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.1e-06
   PF01170.13  39 sGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaaklellegevdvivtnpPYGerlgskka 125
                  +Gt     al++ ++ap     ++k+ +l++ e+  ++a eN    +++ +   v+    ++++ +g +d+i+tnpP+  ++++k+ 
  MMETSP0890-20130614|20149_1  52 TGTGI--LALMAHQVAP-----HMKIDALESHEQSASQAGENVTGSTIRVLHGRVQ--EFAVPQNKGIFDAIITNPPFFSSMKRKGG 129
                  55433..3788888887.....6678899999999999999998888877766666..334566888***************99975 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.6e-06    0.0059      73     124 ..      43      93 ..      14     112 .. 0.82
   2 ?   -3.1   0.0       3.8     4e+03     121     135 ..     271     285 ..     264     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.6e-06
                  TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT-- CS
   PF01135.14  73 kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle 124
                    +r L++G+G+G+l a++a+ v +++++ ++e  ++ +++a +n+  + ++
  MMETSP0890-20130614|20149_1  43 SAKRLLDIGTGTGIL-ALMAHQVAPHMKIDALESHEQSASQAGENVTGSTIR 93 
                  4689**********9.689999**********************99877665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.8
                  TT--SEEEE------ CS
   PF01135.14 121 ldlenvivvvgDGrk 135
                  ++ e+v+v+  DG+k
  MMETSP0890-20130614|20149_1 271 HEKEEVHVHQEDGKK 285
                  566799999999987 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.7e-06     0.007       1      67 [.      48     117 ..      48     159 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.7e-06
    PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeelpfedn..sfDvvvss 67 
                  Ld+G+Gtg+l+ + ++  p  ++ +++ +e++ ++a e+ + + +++ ++ ++e+ ++ n   fD+++ +
  MMETSP0890-20130614|20149_1  48 LDIGTGTGILALMAHQVaPHMKIDALESHEQSASQAGENVTGSTIRVLHGRVQEFAVPQNkgIFDAIITN 117
                  8***********999999*************************************66654349**99876 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.7e-06      0.01       2      74 ..      48     117 ..      47     155 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.7e-06
    PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadara..lpfeegefdlvvca 74 
                  ld+G G+G  + ++++ +   p +++ +++  e+   +a e++   g +++++++++++  +p+++g fd++++ 
  MMETSP0890-20130614|20149_1  48 LDIGTGTGILALMAHQVA---PHMKIDALESHEQSASQAGENV--TGSTIRVLHGRVQEfaVPQNKGIFDAIITN 117
                  9*******9999999886...569*******************..4668********885579*********983 PP

>> PF00891.13  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.8e-05      0.03      80     131 ..      22      74 ..      17     112 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.8e-05
                  CCCCTTTTT.HHHHHCS-GTT-..SEEEE--------HHHHHHHSTT-EEEEE- CS
   PF00891.13  80 maedsrlvakkilekakdfegl..sslvDVGGGtGalaaaivsayPhikgivfD 131
                  m+ + +++a    +  kd++g+  ++l+D+G GtG la + ++  Ph+k+  ++
  MMETSP0890-20130614|20149_1  22 MKVTMDTCA-FGALVLKDWQGYsaKRLLDIGTGTGILALMAHQVAPHMKIDALE 74 
                  555555555.4445567888773369**********************986665 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.11      23      83 ..      18      80 ..       5      92 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
   PF01596.12 23 glsamqvspeegqfLsllvkl...vgakkvleiGvftGyslLatalalPedGkiiaidideeaa 83
                 + +am+v+ +   f  l++k      ak+ l+iG+ tG  +L+ a ++    ki a++ +e+ a
  MMETSP0890-20130614|20149_1 18 DRTAMKVTMDTCAFGALVLKDwqgYSAKRLLDIGTGTGILALM-AHQVAPHMKIDALESHEQSA 80
                 4689*************998622257************99885.66666678999988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.89
# Mc/sec: 780.84
//
Query:       MMETSP0890-20130614|20156_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-83  278.2   6.6    2.6e-61  207.2   2.1    2.5  2  PF05631.9  Protein of unknown function (DUF791)
    1.1e-19   70.3  20.5    1.1e-19   70.3  14.2    1.9  1  PF07690.11 Major Facilitator Superfamily
    0.00019   20.0   2.7    0.00019   20.0   1.9    2.8  3  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF05631.9  Protein of unknown function (DUF791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2   2.1   5.6e-65   2.6e-61      27     188 ..       3     163 ..       1     172 [. 0.97
   2 !   71.7   0.1   8.7e-24     4e-20     193     328 ..     196     345 ..     189     354 .. 0.82

  Alignments for each domain:
  == domain 1    score: 207.2 bits;  conditional E-value: 5.6e-65
    PF05631.9  27 ntspkfksfknnyllvyslmvagdwlqgpyvyylyssyglskgdigrlfiagfgssllfgtivgsladkqgrkracvtyaivyilscitkhspeykvlmigrvlggiatsllfsafeswliaehnkrgfedqllslvfskavflgnglvaiisglfanllad 188
                  n + k k ++  yl+  ++  agdwlqgpy+y+ly++yg+s+++i  lf+agfgss +fgt+vgslad  grkr  ++y+++y+ sc tkh   y++lm+grvlggi+tsllfs f+swl+ eh + ++e+++ls +f++a    n++vai+sg+f++ lad
  MMETSP0890-20130614|20156_1   3 NANDKTKGLQMRYLIGLVMFQAGDWLQGPYMYALYDAYGYSHEEIAALFVAGFGSSAVFGTFVGSLADTIGRKRGALLYVLTYVASCATKHWNSYRILMVGRVLGGISTSLLFSVFDSWLVSEHTRLEIESSVLSNIFANAQ-AANSVVAILSGIFGEWLAD 163
                  556788999************************************************************************************************************************************9.99***************98 PP

  == domain 2    score: 71.7 bits;  conditional E-value: 8.7e-24
    PF05631.9 193 gpvapfdaaasvlaigmaiilstwsenygdtsdkkd..............lleqfkvaakaiasdekvallglvkslfegsmytfvllwtpalsandeei.phgfifatfmlasmlgssvaarllarklrvesymqivllvsavslllpiv 328
                  g  +pfdaa  vl++g + i  +wsenyg   ++kd              + +++k   +++  d +++l+g++ ++fe++my+fv++wtpa+ a   +  p+g if+ +mla+  g+ ++++ l+   ++   + +v+ +  ++l +p  
  MMETSP0890-20130614|20156_1 196 GYCTPFDAAGVVLLLGGTYISMAWSENYGGHLENKDhegrngsvkdiessVFSSLKSGFITLFRDRRILLIGTISAFFEAAMYSFVFEWTPAVKATPTDTpPYGEIFSIMMLACAAGTRIYSNRLSSP-QATHLLVYVFALGGLALAIPAF 345
                  6689*************************98887763333333222222245567888889999*****************************9766554279******************9999865.6678999**********99976 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3  14.2   2.4e-23   1.1e-19       2     343 ..      16     397 ..      15     408 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 2.4e-23
   PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll..fasslwalllvlrvlqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslg..................................WravFlilailsllaav.lvllll.......prepperkrkspaeel......rkepaplvp....awklllkppvlw.illialllfffvfsglltllplylqevlglsp.glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaft......ssavwlllvlvliGfglglvfptllalasdlappeerGtasglfn 343
                  l++ +++ ++ ++ gp +  al +++g+s+ ei  l+++ +  +a++  ++G+l+d +Gr+r  ll +l+++++  +++  + +s+  +l+v+rvl G+ +++lf++  ++++   ++ e  +++l+ + a ++++  + ++l+g++ ++l                                   +  +F ++++++ll++  +  +         +        +++  e+         ++++++    ++  l++++ ++ i  i +++ ++++s+++ ++p    +  + +p g + +   ++l++++g      +  +s+rl++  ++ l + +++l++l+la+ af+        ++++l+++vl+ + +g++fp++ +l s+l+p  +r t++ lf 
  MMETSP0890-20130614|20156_1  16 LIGLVMFQAGDWLQGPYMY-ALYDAYGYSHEEIAALFVAGFGSSAVFGTFVGSLADTIGRKRGALLYVLTYVAS--CATkhW-NSYR-ILMVGRVLGGISTSLLFSVFDSWLVSEHTRlEIESSVLSNIFANAQAANSVVAILSGIFGEWLAdlgplvklsdqskqstqrmnekiisndgsimaggYCTPFDAAGVVLLLGGTyI-SMAWsenygghL--------ENKDHEGrngsvkD-IESSVFSslksGFITLFRDRRILlIGTISAFFEAAMYSFVFEWTPAVKATPTDTPPyGEIFSI--MMLACAAG------TRIYSNRLSSPQATHLLVYVFALGGLALAIPAFPktlagkRAPLFCLVAFVLFEVVVGIYFPSVSTLKSKLVPDAQRSTIYNLFR 397
                  688999999**********.9*****************************************************..666567.7777.**********************9877666669999999888887777777777777777777777778**************************99998899999999999998833.333324444432........33333322444431.333333356665666666666632333333333345666777777743333333335433333..44444444......555557777778999999999999999999999999999889999999******************************9998876 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.9   4.1e-08   0.00019      49     158 ..      49     155 ..      18     163 .. 0.80
   2 !    4.1   0.5    0.0028        13      16      66 ..     266     316 ..     264     401 .. 0.78
   3 ?   -0.9   0.3     0.092   4.2e+02     112     199 ..     331     420 ..     329     423 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4.1e-08
   PF00083.19  49 glivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGl.isvlvPmyisEiApkklr.galgslyqlaitvGilvaaiig 158
                   l+v+ f   a++G ++++ lad++GRk++ l  ++ +v++ +  ++      +  l+vgRv+ G++  l  sv+ + ++sE +  ++  + l+ ++  a +++ +va + g
  MMETSP0890-20130614|20156_1  49 ALFVAGFGSSAVFGTFVGS-LADTIGRKRGALLYVLTYVASCATKHWNS----YRILMVGRVLGGISTSLlFSVFDSWLVSEHTRLEIEsSVLSNIFANAQAANSVVAILSG 155
                  4677777777777777766.*********************99999998....**************997257777888899888888867777777777777777777665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0028
   PF00083.19  16 tgvigatltlikfaknfglltsksakeessvlsglivssflvgaliGslfa 66 
                  +g+i+a+ +   + + f +  + +a+ +++  +g i+s+++++++ G  + 
  MMETSP0890-20130614|20156_1 266 IGTISAFFEAAMYSFVFEWTPAVKATPTDTPPYGEIFSIMMLACAAGTRIY 316
                  799******9999************999*****************997554 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.092
   PF00083.19 112 vGlgvGlisvlvPmyisEiApkklrgalgslyqla.itvGilvaaiiglglnktsnadgwrillglqlvpalllllll.lflpeSprylv 199
                    +++G+  +++P +   +A k++  ++ + + l+ ++vGi + ++ +l+ + + +a++  i+  + + +  l+l++l   +p S  ++v
  MMETSP0890-20130614|20156_1 331 YVFALGGLALAIPAFPKTLAGKRAPLFCLVAFVLFeVVVGIYFPSVSTLKSKLVPDAQRSTIYNLFRIPLNGLVLIVLlSNAPGSTIFFV 420
                  567777777777777777777777755555554442588888888888888888887778887777777766665554145676666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.63
# Mc/sec: 1814.38
//
Query:       MMETSP0890-20130614|20170_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   12.6   0.4       0.19   11.6   0.2    1.6  1  PF06747.8 CHCH domain


Domain annotation for each model (and alignments):
>> PF06747.8  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.4e-05      0.19      14      35 .]     109     130 ..      93     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
                  HH-SS--TTHHHHHHHHHHHCC CS
    PF06747.8  14 ensdefskCrkefeafreCvkk 35 
                  en+++  kC  +++ + eC++k
  MMETSP0890-20130614|20170_1 109 ENGQDVLKCAHLVSIYSECAQK 130
                  46667**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       896  (0.0655354); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 643.47
//
Query:       MMETSP0890-20130614|20184_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-41  141.2  16.7    2.4e-27   95.3   3.8    2.0  2  PF00909.16 Ammonium Transporter Family
  ------ inclusion threshold ------
       0.29   10.8   2.7       0.59    9.8   0.1    2.7  3  PF06634.7  Protein of unknown function (DUF1156)


Domain annotation for each model (and alignments):
>> PF00909.16  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   2.4   5.6e-18   3.8e-14     160     246 ..       2      97 ..       1     105 [. 0.87
   2 !   95.3   3.8   3.6e-31   2.4e-27     250     375 ..     129     263 ..     118     270 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 5.6e-18
                  HHH----------------.........--S--GSBHHHHH---HHHH--------------SHHHHH....HHHHHHHHHHHHH-------TTT- CS
   PF00909.16 160 ggvagLaaalvlgkregrfe......gkeeaikghnlpfavlGtllLwfgWfgFNagsaltankrara...raavtTllAaaagaltallisrlke 246
                  gg+++L+++ ++ +r+grf+      ++ e+ + +   f++lG+++Lw gWf+FN+ s+l++++ ++     a+++T+lAa+a+ l  ++is +++
  MMETSP0890-20130614|20184_1   2 GGFSALILTNFVAPRRGRFPtstadaERFERPPDSGPAFSTLGVFILWTGWFAFNGCSTLAVTNGSAGiaaHAVFNTMLAASAACLSGTIISAIHT 97 
                  9******************9977443333344457789**************************99999999**************9999998875 PP

  == domain 2    score: 95.3 bits;  conditional E-value: 3.6e-31
                  ----------------TTT------------------------CHHHHHHTS-HTTGG-----------------TTSTT--..........-----------..-HHHHHHHHHHHHHHH---TTT---HHHHHH CS
   PF00909.16 250 nvlglanGilAGlVAiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv..........askisggllsgegkqlvvqligilvilayafvvtlilllllkll 375
                  ++ +++n++lAGlV+iTa+cav++ wgAli G++Ag+l +l+   +   lkidD++d+++vHg++G+ G+la+g+fa++ ++          a++ +g + +g+g  l + ++ ilv+ a++ ++ + l+l+l+++
  MMETSP0890-20130614|20184_1 129 DISYTLNSVLAGLVSITAGCAVMNHWGALITGTLAGILYYLSSR-ILYLLKIDDVVDAFPVHGICGAFGVLATGFFATPFYYklalssepgrADRCAGIFYGGTGGTLASGAAFILVVSALVGACLVPLFLILHAF 263
                  67799**************************************7.**********************************9999*******955555555555555****************************986 PP

>> PF06634.7  Protein of unknown function (DUF1156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.38   2.6e+03      14      29 ..      30      45 ..      23      47 .. 0.82
   2 ?   -2.8   0.6      0.72     5e+03      30      36 ..     115     121 ..     114     128 .. 0.76
   3 ?    9.8   0.1   8.6e-05      0.59      24      49 ..     294     319 ..     290     348 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.38
    PF06634.7 14 rEksirhgphlstLhl 29
                  E+ + +gp +stL++
  MMETSP0890-20130614|20184_1 30 FERPPDSGPAFSTLGV 45
                 5899999*9****997 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.72
    PF06634.7  30 WWARrPl 36 
                  WW Rr +
  MMETSP0890-20130614|20184_1 115 WWRRRDH 121
                  **99965 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 8.6e-05
    PF06634.7  24 lstLhlWWARrPlaaaRAvvlaaLvp 49 
                   s L  WW Rr  a++RA +  ++ +
  MMETSP0890-20130614|20184_1 294 ASSLAPWWFRRIFATSRAPLDTSMKN 319
                  68999*************99888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.75
# Mc/sec: 1169.42
//
Query:       MMETSP0890-20130614|20195_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-26   91.9   0.0    3.3e-26   91.8   0.0    1.0  1  PF03971.9 Monomeric isocitrate dehydrogenase


Domain annotation for each model (and alignments):
>> PF03971.9  Monomeric isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   2.4e-30   3.3e-26     254     336 ..       1      88 []       1      88 [] 0.89

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 2.4e-30
    PF03971.9 254 mmkvsdpiifGhavkvfykdvfdkygdlldelGvdvnnGlgdlyakieslpa.eqreeieadiqavy....akrpelamvdsdkGitn 336
                  mmkvsdpi+fGhav+ fy+d+f+k+++ ++++ vd+ nGlgd+yak++ l++ +++++i +d++a+       rp+lamvdsd+Gitn
  MMETSP0890-20130614|20195_1   1 MMKVSDPIMFGHAVECFYRDTFAKHAQAFEKMKVDARNGLGDVYAKLQLLNEpSEQAAIATDLEACLteceHVRPQLAMVDSDRGITN 88 
                  9*************************************************984678899999887651111568*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 305.62
//
Query:       MMETSP0890-20130614|20205_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-21   75.9  41.2    9.6e-18   63.9  11.2    1.7  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.13   11.6   0.2       0.27   10.6   0.1    1.6  2  PF07895.6  Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9  11.2   1.4e-21   9.6e-18      98     354 .]      33     287 ..       1     287 [. 0.69
   2 !   25.7  11.8   5.9e-10     4e-06       2     173 ..     148     319 ..     147     341 .. 0.77

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 1.4e-21
   PF07690.11  98 lgagalfpagaaliadwfpk..eergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeelrkepaplvp......awklllkppvlwillialllfffvfsglltllplylqevlglsp...glllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlappeerGtasglfntagslggalgp 354
                  + + a+f +++al+a ++ +  +er+ alg l++++ +Ga lgp+lgg+l + + +     ++ i s+++++    l +  p+e+++ ++ ++   ++++ ++        +++   + +w lli+  ++++ +s+l t lpl    + g+++   g l+++     +al++++ga++lg ls  l+     + all+ ++a+l+l l+a +  +++l+ +++l    + +  ++++++ + ++ ++e+Gt++g+  ++++l++++gp
  MMETSP0890-20130614|20205_1  33 ILQ-AGFLVAQALVASITRGheSERAAALGRLTTAYTVGATLGPALGGILGARGDYYRGARLAVIGSIFSML----LAVLLPKESSNTNQSTD---QHHSSSNhdistkKRGQIALAKSVWPLLITKTMTGVTNSILGTALPLV-LRDIGFDEkrlG-LSMS---VSSALVAIVGAFCLGPLSLALPGASLPARALLFKTVAVLILGLAASSGISILLATIIALHAAIAHVLATSMTSVSVGSVQRNEQGTLLGIEHALFALSRIFGP 287
                  443.6788999999999998657****************************877744444444444444433....33333444444444444...2333333344445566777777779777777777789999*******7.*******75554.3333...3444444444********999998888888888888888888888887777777777775554444478888888888999********************98 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 5.9e-10
   PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltl.yslgyaiasllaGrlsdrf.G....rrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllll 173
                  l++  +++ ++silg+alp ++ +d g+++  +g+ +++  +l+++++++ +G+ls  + G    +r +l+ ++++++lg l+++  s+++ ll+   +l ++ a +l++++ ++ +  + ++e+g  lg+  a f+l+ i+gp ++      lg  ++  i+a++  ++a+l+ +l+
  MMETSP0890-20130614|20205_1 148 LITKTMTGVTNSILGTALP-LVLRDIGFDEKRLGLSMSVsSALVAIVGAFCLGPLSLALpGaslpARALLFKTVAVLILG-LAAS--SGISILLATIIALHAAIAHVLATSMTSVSVGSVQRNEQGTLLGIEHALFALSRIFGPSFATSSG--LGILSLCTICALIDGILALLFPVLM 319
                  677889999**********.899************77774777999999999***9988442221333444444444444.3333..999999999999***********************************************98544..6766666666666666666555555 PP

>> PF07895.6  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.58     4e+03     101     120 ..     113     132 ..      90     159 .. 0.51
   2 ?   10.6   0.1     4e-05      0.27      78     186 ..     207     331 ..     178     350 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.58
    PF07895.6 101 kklmirydavakkkvirvsk 120
                  ++++++ d+  + + ++ s+
  MMETSP0890-20130614|20205_1 113 SNTNQSTDQHHSSSNHDIST 132
                  33333333333333333333 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4e-05
    PF07895.6  78 gvnlk.........lilllglils..lllvllt....wkklmirydavakkkvirvskkkklvrlllliilllillllfle.vilgevlsllsaqallslisgllllmwlvylqliywekknhki 186
                  g++l           +l+lgl+ s  + ++l t       + +   +++    +   +++ +  ll +  +l++l  +f + +  ++ l  ls  ++ +li g+l+l+++v +++i +  +  k 
  MMETSP0890-20130614|20205_1 207 GASLParallfktvAVLILGLAASsgISILLATiialHAAIAHVLATSMTSVSVGSVQRNEQGTLLGIEHALFALSRIFGPsFATSSGLGILSLCTICALIDGILALLFPVLMTDILLISPSSKS 331
                  55554555555555566666666666333333322223333333333333333333344444567789999999*****99777788889999999*******************9887665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 983.33
//
Query:       MMETSP0890-20130614|20257_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.88
# Mc/sec: 841.45
//
Query:       MMETSP0890-20130614|20268_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-35  120.8   0.1    3.6e-35  120.6   0.0    1.1  1  PF04410.9 Gar1/Naf1 RNA binding region


Domain annotation for each model (and alignments):
>> PF04410.9  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   2.6e-39   3.6e-35       7     152 ..      22     163 ..      16     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 120.6 bits;  conditional E-value: 2.6e-39
    PF04410.9   7 eggpggeedvtiepeekieelGkissvvenevvikstnskkvldfnsilcledktviGkVdEifGpvnnpfYsVkfnleegikakslkvgdkvyydpd...paqrfltkplkqqkgtdasnkhdeelp.eeeqgefsddekeaeakrgkk 152
                  +g +g++  + ++p+e+++e+G +++++e+++v+k tn   +++fn+ ++ ++ t +GkVdE+fGp+n+++++Vk  +e+g+ a+s+k++d++ +dp+   p++rf+++p+   kg+ ++ k +++++   ++     +++++++k+g++
  MMETSP0890-20130614|20268_1  22 RGFGGKGGRMPEGPPERVVEVGLVMHACEGDIVCKLTNA-NIPYFNASIYVDKDTRVGKVDEVFGPINAVMFTVK--PETGVLATSFKADDRLAIDPTkllPLSRFTNPPPGGGKGGGRGSKGGGRGKgVSGR-----GKGGKGGKGGRS 163
                  45556678999****************************.***********************************..**********************************9966655544444444412222.....222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 722.84
//
Query:       MMETSP0890-20130614|20288_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.82
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|20313_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-29  102.1   0.0      6e-29  100.9   0.0    1.6  1  PF13535.1  ATP-grasp domain
    0.00021   21.0   0.0    0.00057   19.6   0.0    1.7  2  PF02655.9  ATP-grasp domain
    0.00039   19.9   0.0    0.00065   19.2   0.0    1.3  1  PF01071.14 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.039   12.9   0.0    1.5  2  PF14397.1  Sugar-transfer associated ATP-grasp
      0.037   13.3   0.0      0.058   12.6   0.0    1.2  1  PF07478.8  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   2.2e-32     6e-29       2     182 ..     208     411 ..     207     412 .. 0.90

  Alignments for each domain:
  == domain 1    score: 100.9 bits;  conditional E-value: 2.2e-32
    PF13535.1   2 lrdKllmrellaeaglpvprfalvdseedleaaaeeig........fpvvlKPadgagslgvrrvddaaeleaalealaaeve...ldegeflvEeyieGdeysvdglvldgelvflgisryletsppdfsdgaelgsvs.pseepleealrelaerllkalglkngvfHlEfkltpd.Gr...........lvliEinaRpgGa 182
                   r+K++m +++++ag++++r++ +++   +++++++            +++KP ++ags gv++++++a++++a+++l ++ +     ++ +lv+e+++G+ey +dg++ d  + ++ i++y++  p+++++ +  g+    +e+p  ++l+ +a+++l+al+lk+g+ H+E+kltp+ ++            +l+E++aR  Ga
  MMETSP0890-20130614|20313_1 208 RRNKSEMGDAVRKAGVRAVRQLKATTWKPVQNWLANDWqlfddhteCQLIVKPMESAGSDGVTLCHSPADVRNAIHNLVGSINglgQTNEGVLVQEFLSGTEYVIDGVSRDNIHKVVAIWEYDRR-PTNGAGFVLHGQKLlSGEHPVVQKLVPYAAKVLTALDLKYGPSHMEVKLTPHpDPktraenpqitdPCLVEVGARCHGA 411
                  59******************999999999999988776776666667**************************************9999**********************************99.9999988777777636677777*****************************9776777888888888888888888776 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.1e-07   0.00057      30      94 ..     252     329 ..     209     375 .. 0.74
   2 ?   -3.5   0.0       2.7   7.5e+03     114     145 ..     463     494 ..     452     500 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.1e-07
    PF02655.9  30 eekklvvKprdGaGgesvrvvenkeeaeealeele.............vvqefieGeplSvsvlsdgekvlllavnrq 94 
                   e++l+vKp+++aG+++v++ +   +  +a+++l              +vqef++G+++ ++ +s  +  +++a+ + 
  MMETSP0890-20130614|20313_1 252 TECQLIVKPMESAGSDGVTLCHSPADVRNAIHNLVgsinglgqtnegvLVQEFLSGTEYVIDGVSRDNIHKVVAIWEY 329
                  4899*******************9999999999889999**************************8887777777554 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.7
    PF02655.9 114 telkeelvelaeevvealegllGyvGvDlvlk 145
                  t++++ l ++  +++e +++l +y G ++ +k
  MMETSP0890-20130614|20313_1 463 THKRGLLKSIHPKALETITQLESYRGHEIFIK 494
                  45566666777788888888888888887776 PP

>> PF01071.14  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.4e-07   0.00065      17     103 ..     231     319 ..     218     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.4e-07
                  B--EEEESS.HHHHHHHHHH-SS-EEEEEE---------EEESSHHHHHHHHHHHCTS.-----TTSSEEEEE-----EEEEEEEE--- CS
   PF01071.14  17 taeyeaftd.peeakeyieeatakalVvKadglaagKgvivakseeealkavkeilek.kkfGeagekvviEelleGeEvsvlalvdgk 103
                  +++++ +++  ++  + ++++t+  l+vK+   a+  gv++++s ++  +a+++++ + +  G+++e v++ e+l+G+E  + +++  +
  MMETSP0890-20130614|20313_1 231 ATTWKPVQNwLANDWQLFDDHTECQLIVKPMESAGSDGVTLCHSPADVRNAIHNLVGSiNGLGQTNEGVLVQEFLSGTEYVIDGVSRDN 319
                  55666666633444566778888889****************************997625679****************9888776544 PP

>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.96   2.6e+03     206     232 ..     131     157 ..     129     160 .. 0.82
   2 ?   12.9   0.0   1.4e-05     0.039      13     124 ..     197     304 ..     187     311 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.96
    PF14397.1 206 tgakfkgfeipnwkevlelvkkaarrl 232
                  +++  +++ ip+ + +++l++++++ +
  MMETSP0890-20130614|20313_1 131 SKTLHVDLSIPMHQGAKKLADQLEKLI 157
                  677778999**********99987755 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.4e-05
    PF14397.1  13 lrkndkeevelledKsifkelfeelglpipalifqldrklldlrskadeseieafireeepkelvvKpvdgsgGkgieileaddq..vsaekklealyklleenekfefvvqel 124
                  l  n ++ +e  ++Ks ++ +++++g+    +++ql++ + ++ +   +++ ++f+ + +  +l+vKp+++ g+ g++++    +    + +   ++  l ++ne  + +vqe+
  MMETSP0890-20130614|20313_1 197 LATNGTRLTEARRNKSEMGDAVRKAGV---RAVRQLKATTWKPVQNWLANDWQLFDDH-TECQLIVKPMESAGSDGVTLCHSPADvrNAIHNLVGSINGLGQTNE--GVLVQEF 304
                  445899999999*************87...7999*********988999999999955.6899****************98765532344444455555555555..8888887 PP

>> PF07478.8  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05     0.058      20      86 ..     240     313 ..     218     336 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
                  -S--H..HHHHH----EEEEE---------EEESSGGGHHHHHHHHH.......TT-SSEEEEE-----EEEE- CS
    PF07478.8  20 akkeklekvveklgypvfvKpareGSSvGiskveseeeleeaieeaf.......qydekvlveeaiegreieva 86 
                  +  ++++ +  + +  ++vKp ++  S G++ ++s  ++++ai++ +       q +e vlv+e+++g+e+ + 
  MMETSP0890-20130614|20313_1 240 WLANDWQLFDDHTECQLIVKPMESAGSDGVTLCHSPADVRNAIHNLVgsinglgQTNEGVLVQEFLSGTEYVID 313
                  33344777888888999******************999999987754333333389999***********9773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.83
# Mc/sec: 1564.85
//
Query:       MMETSP0890-20130614|20324_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:01.15
# Mc/sec: 88.83
//
Query:       MMETSP0890-20130614|20323_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-09   35.4   0.0    6.8e-09   35.1   0.0    1.1  1  PF00069.20 Protein kinase domain
     0.0044   16.0   0.0     0.0056   15.7   0.0    1.2  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     1e-12   6.8e-09     163     255 ..       2     114 ..       1     117 [. 0.76

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1e-12
                  GGS-HHHHH....TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH................HHHHHHHHHHT-SSGGGS--HHHHH CS
   PF00069.20 163 eYmAPEvll....kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks................eelkdlikkllekdpakRltaeeil 255
                  +Y+APE+       ++  t+k+DvW+lG++l+ +++g  pf+ e   ++++ i+ +l ++ +     + +++                +++ d  + ll  dp++R+ ++++l
  MMETSP0890-20130614|20323_1   2 TYRAPELWDpppeISTINTTKADVWALGCLLWAMAFGYSPFEAEFPSSKSQYIKPRLVETSHLRVLATPPTPpldslpnvqqtspqffQSVLDASRLLLVLDPTERPHIDHVL 114
                  69*****654444568889*************************555555555555555555555544444466778888888898888888888889999999999999887 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.1e-07    0.0056     180     211 ..      17      47 ..       1      67 [. 0.70

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.1e-07
                  SEEEHHHHHHH---HHHHHHTTT-GTTTTSHH CS
   PF07714.12 180 kkftsksDvWsfGvllwEiftlgespypglsn 211
                  +  t+k+DvW+ G+llw ++  g sp++   +
  MMETSP0890-20130614|20323_1  17 TINTTKADVWALGCLLWAMAF-GYSPFEAEFP 47 
                  34799************9876.8888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 519.21
//
Query:       MMETSP0890-20130614|20334_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:01.15
# Mc/sec: 1196.11
//
Query:       MMETSP0890-20130614|20356_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        96  (0.00702165); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.77
# Mc/sec: 202.29
//
Query:       MMETSP0890-20130614|20385_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-41  139.5   0.0    6.7e-41  139.2   0.0    1.1  1  PF00071.17 Ras family
    1.8e-20   73.4   0.0    3.1e-20   72.7   0.0    1.4  1  PF08477.8  Miro-like protein
      5e-12   45.2   0.0    6.8e-12   44.8   0.0    1.2  1  PF00025.16 ADP-ribosylation factor family
    1.3e-06   28.3   0.0    2.2e-06   27.5   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
    3.8e-06   26.3   0.0    4.1e-05   23.0   0.0    2.1  1  PF00009.22 Elongation factor Tu GTP binding domain
    0.00046   19.3   0.0       0.18   10.9   0.0    2.1  2  PF02421.13 Ferrous iron transport protein B
     0.0006   18.9   0.0    0.00083   18.4   0.0    1.2  1  PF09439.5  Signal recognition particle receptor beta subunit
  ------ inclusion threshold ------
       0.01   14.8   0.0      0.013   14.5   0.0    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
      0.013   15.1   0.0      0.018   14.5   0.0    1.2  1  PF01637.13 Archaeal ATPase
      0.034   13.4   0.7        1.3    8.2   0.2    2.9  2  PF13481.1  AAA domain
      0.056   13.7   0.2      0.097   12.9   0.1    1.6  1  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0   5.4e-44   6.7e-41       1     159 [.      12     177 ..      12     180 .. 0.95

  Alignments for each domain:
  == domain 1    score: 139.2 bits;  conditional E-value: 5.4e-44
                  EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGH..HHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHST...TTSSEEEE---TTGGG.G-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHH CS
   PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefk..slrslyyrdaegillvyditsresfenvkkwveeikrvae...envpivLvGnKvDlee.kravsteegeelakelglkfletSAktnenveeafeellre 159
                  K+v++G+s+vGKtsll++f++++F+++  +T g+df ++ +e+d g++++l iwDTAGqe+f+  +l +++yr+a+g+llvyd t+ +sfe+++ w  e+ + ++   +++p+v+vGnK+D+ + +r  +++ +++++++lg+  + tSAk+ ++v  a+e++++ 
  MMETSP0890-20130614|20385_1  12 KCVVLGSSNVGKTSLLTQFIHGRFDSTRRATTGADFASRVLEIDqGRKIRLVIWDTAGQERFHhgTLGNAFYRGADGALLVYDTTDIRSFEQIEMWRGELLQRVQgppDEFPVVVVGNKIDIPSeTRDSEFAAVQKWCRDLGIGICLTSAKDGTGVLAAMEAIAHL 177
                  89*****************************************989****************844699*********************************999999999***********9764799999****************************9999875 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   2.5e-23   3.1e-20       1     119 []      12     132 ..      12     132 .. 0.91

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 2.5e-23
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel.lelwdlggreelkkehell..lkkadaillvydltdeesleevsellawl.aelrklgkkipvilvgnklD 119
                  k+vv+G+++vGK+sll q++ + f+  ++++ ++g++ a+  le+d  +++ l +wd++g+e++++        + ad++llvyd td +s+e+++    +l ++ ++   + pv++vgnk+D
  MMETSP0890-20130614|20385_1  12 KCVVLGSSNVGKTSLLTQFIHGRFD--STRRATTGADFASRVLEIDQGRKIrLVIWDTAGQERFHHGTLGNafYRGADGALLVYDTTDIRSFEQIEMWRGELlQRVQGPPDEFPVVVVGNKID 132
                  89***********************..*******************99999999***********97654456**********************98887761555665666*********99 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.5e-15   6.8e-12      14     172 ..      10     175 ..       2     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 5.5e-15
                  EEEEEEE--TT---HHHHHHHHHS-EEEE.-S--S..-EEEEEEE...TTEEEEEEE----GGGGG..CGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGT..TSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEEEEBTTTTB--HHHHHHHH CS
   PF00025.16  14 elrilllGLDnaGKtTilkklkleelvtt.vPTig..fnveelei...knlkftvwDvGGqeklRp..lWknYfektdavifvvDsadreRleeakeeLkalleeeelk..evallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                   l++++lG  n GKt +l+++ ++++++t   T+g  f ++ lei   +++++ +wD  Gqe+  +  l + +++  d+ + v D++d + +e+ +    +ll++ +    e +++v++NK+D+p+   ++e ++    ++   +  + i  +sa  g+g+  ++e ++
  MMETSP0890-20130614|20385_1  10 LLKCVVLGSSNVGKTSLLTQFIHGRFDSTrRATTGadFASRVLEIdqgRKIRLVIWDTAGQERFHHgtLGNAFYRGADGALLVYDTTDIRSFEQIEMWRGELLQRVQGPpdEFPVVVVGNKIDIPSETRDSEFAAV---QKWCRDLGIGICLTSAKDGTGVLAAMEAIA 175
                  579*********************99875245665236777788877789************99743389**********************99999999999987754449*************99999988765...444446779999999999999999988775 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.8e-09   2.2e-06       1      90 [.      12     100 ..      12     130 .. 0.54

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.8e-09
                  EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE..ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS..H CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev..kkek...iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa..v 90 
                  +++++G +NvGK++L+ + ++ +   ++  + t  d   + +  ++++   ++++Dt+G  e+ +++  +       +  + ad++llv d+++   
  MMETSP0890-20130614|20385_1  12 KCVVLGSSNVGKTSLLTQFIHGR-FDSTRRATTGADFASRVLeiDQGRkirLVIWDTAGQ-ERFHHGTLG------NAFYRGADGALLVYDTTDirS 100
                  589*****************753.23333333333332222232222234468******3.332333322......3445999*******9655331 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.3e-08   4.1e-05      18     184 ..       9     176 ..       8     180 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.3e-08
                  HHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---B...BSSEEEEEET.ESCEEEEEEE----GGGHHHHHHH..HHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--.......EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHH CS
   PF00009.22  18 TltdallykagaiskrgeeaegerlldklkeerergiT...iksaaisleketkkrlinliDtPGHvdFskevirg..lrvlDgavlvvdaveGvepqTeevlrlakklgvk.......iivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaive 184
                  Tl+++++  ++++ k +  +   +++  + +  +r  T     s + +++ +++k ++ + Dt G + F   ++     r +Dga+lv d ++       e++r    ++v+       ++vv NKiD + +  +     ++ k +++ +      + +  +Sa++g+g+ a +eai +
  MMETSP0890-20130614|20385_1   9 TLLKCVVLGSSNVGKTSLLT---QFIHGRFDSTRRATTgadFASRVLEID-QGRKIRLVIWDTAGQERFHHGTLGNafYRGADGALLVYDTTDIRSFEQIEMWRGELLQRVQgppdefpVVVVGNKIDIPSETRDSEFAAVQ-KWCRDLG------IGICLTSAKDGTGVLAAMEAIAH 176
                  55555554444444433322...233333333333333111445555555.9999999999********99998765789************99999999999876666665556777689999******888888777777.5545553......45889999999999888888876 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0033         4       2      20 ..      12      30 ..      11      36 .. 0.85
   2 !   10.9   0.0   0.00014      0.18     106     172 ..     122     190 ..     112     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0033
                 EEEEE--TT---HHHHHHH CS
   PF02421.13  2 tvalvGnpnvGKttlfnal 20
                 +++++G  nvGKt+l+ + 
  MMETSP0890-20130614|20385_1 12 KCVVLGSSNVGKTSLLTQF 30
                 67899**********9875 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00014
                  -SEEEEEETHHHHHC---E..B-HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTCG-XXX..XXX CS
   PF02421.13 106 vpvvvalnmiDeaekkgik..idlkkLselLgvpvvktvarkkkgieelleaiievaekeekekkllky 172
                   pvvv+ n+iD  ++++ +    ++k  + Lg+ +  t+a++++g+ + +eai+++a ++++++ + ++
  MMETSP0890-20130614|20385_1 122 FPVVVVGNKIDIPSETRDSefAAVQKWCRDLGIGICLTSAKDGTGVLAAMEAIAHLAYEAKQRRGKSSH 190
                  6899999999987665533225789999*************************9988877666554444 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.7e-07   0.00083       6     124 ..      13     133 ..       8     141 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.7e-07
                  EEEE--TT---HHHHHHHHHSS-------S.S-EEETT-....-----EEE..E----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTS CS
    PF09439.5   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv.ksekgkkltli..DfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqel 124
                   +++G s+ GKTsl+t+   + + +t  +   + +a +v + ++g k++l+  D  G+e++ +  l +    + + g + v D t d +  +++  +  e+l  ++  +++ ++++  nK ++
  MMETSP0890-20130614|20385_1  13 CVVLGSSNVGKTSLLTQFIHGRFDSTRRATtGADFASRVlEIDQGRKIRLViwDTAGQERFHHGTLGN-AFYRGADGALLVYDTT-DIRSFEQIEMWRGELLQRVQGPPDEFPVVVVGNKIDI 133
                  5789*****************88888877767777777765556666555544********9998888.5666778888788754.7788887777777888888888888888888888776 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     1e-05     0.013       1      78 [.      12      87 ..      12     173 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1e-05
    PF04670.7  1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqs..hvrflgnlklnlwDcgGqeefvenylsrqkeeifsnve 78
                 k +++G s+ GKtS+    F +     t+r ++  d      ++   +++ l +wD+ Gqe+f + +l    +  ++  +
  MMETSP0890-20130614|20385_1 12 KCVVLGSSNVGKTSLLT-QFIHGRFDSTRRATTGADFASRvlEIDQGRKIRLVIWDTAGQERFHHGTL---GNAFYRGAD 87
                 56799*********754.4555555566666666666555115556789**************98865...444444444 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05     0.018      23      46 ..      13      36 ..       3      70 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-05
                 EEEE--TT---HHHHHHHHHH-.. CS
   PF01637.13 23 iviyGprrsGKTaLlkeileelke 46
                  v++G  ++GKT+Ll +++  + +
  MMETSP0890-20130614|20385_1 13 CVVLGSSNVGKTSLLTQFIHGRFD 36
                 59*****************98744 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2     0.001       1.3      37      82 ..      14      70 ..      11     160 .. 0.67
   2 ?   -0.6   0.0      0.51   6.3e+02     124     124 ..     166     166 ..     107     218 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.001
    PF13481.1 37 llaGapgtGKStlalqlaaava.......tGepflg....pvvpepgrVlylsaEds 82
                 ++ G++++GK++l++q +           tG +f        + ++ r +++++ ++
  MMETSP0890-20130614|20385_1 14 VVLGSSNVGKTSLLTQFIHGRFdstrratTGADFASrvleIDQGRKIRLVIWDTAGQ 70
                 677777777777777776666555555555555544444322234444444444444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.51
    PF13481.1 124 a 124
                   
  MMETSP0890-20130614|20385_1 166 G 166
                  2 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.8e-05     0.097      26      64 ..      13      40 ..       2     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.8e-05
    PF13191.1 26 llvtGpsGiGKSsLlrelakpillerlrfaagkfdqllr 64
                 ++v+G s +GK+sLl++++           +g+fd   r
  MMETSP0890-20130614|20385_1 13 CVVLGSSNVGKTSLLTQFI-----------HGRFDSTRR 40
                 89***************44...........444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 650.86
//
Query:       MMETSP0890-20130614|20399_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-57  190.3   0.3    2.6e-20   71.7   0.0    3.2  3  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.035   13.6   0.5          5    6.7   0.1    2.5  2  PF14343.1  PrcB C-terminal
       0.25   11.4   2.3        4.4    7.4   0.3    2.6  2  PF13493.1  Domain of unknown function (DUF4118)


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   6.6e-19     3e-15       8      92 ..       2      84 ..       1      88 [. 0.92
   2 !   71.7   0.0   5.7e-24   2.6e-20       3      91 ..      89     172 ..      87     177 .. 0.95
   3 !   60.1   0.0   2.5e-20   1.1e-16       8      82 ..     183     266 ..     176     267 .] 0.87

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 6.6e-19
                 HHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22  8 sllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92
                 + +a+  A  +a+l+t+PldvvK+r+q   ++ +    +il+ +++i+++eG+  l++G+ p+l+ + ++++  f +ye  kk  
  MMETSP0890-20130614|20399_1  2 HSIAAFGASSVATLITYPLDVVKVRFQ--IDRTKGALPSILSQTSSIVHKEGLFILWSGIFPALIASGISWSGFFYFYEVAKKRW 84
                 5689999********************..666777789********************************************976 PP

  == domain 2    score: 71.7 bits;  conditional E-value: 5.7e-24
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkl 91 
                  ++++++++a++ Ag i +l+t+P++++Ktrlq      +s+y g+lda+ +i++eeGir+lyrG++p+ll  +++ +i++++ye lk++
  MMETSP0890-20130614|20399_1  89 SGMIRDAAASVEAGSIMVLITNPIWLIKTRLQ----LPNSPYLGFLDAFTRIIQEEGIRALYRGVVPALL-LTSHGVIQLTIYEELKRF 172
                  6789999*************************....9*********************************.5899************97 PP

  == domain 3    score: 60.1 bits;  conditional E-value: 2.5e-20
                  HHH----HHHCCHHHCHHHHHHHHHHH.........-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHH CS
   PF00153.22   8 sllaGaiAgaiaalvttPldvvKtrlq.........ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikf 82 
                   l+ G+iA++ aal+t+P  vvKtr+q          + +  + +   ++++++ +++ eG+rg+ +G++pn lrv+p+a+i+f
  MMETSP0890-20130614|20399_1 183 ALVYGSIAKLSAALITYPYQVVKTRVQqrytnpnskYAYDLPAGELARTIRCIRDTWQVEGFRGFLKGCWPNSLRVIPNAGITF 266
                  5899***********************8888887653444445566788999******************************99 PP

>> PF14343.1  PrcB C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0048        22      44      58 ..      11      25 ..       8      27 .. 0.83
   2 ?    6.7   0.1    0.0011         5      48      58 ..     196     206 ..     185     208 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0048
    PF14343.1 44 mvtqaityPyvvlkv 58
                  v++ ityP  v+kv
  MMETSP0890-20130614|20399_1 11 SVATLITYPLDVVKV 25
                 57778********98 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0011
    PF14343.1  48 aityPyvvlkv 58 
                   ityPy v+k+
  MMETSP0890-20130614|20399_1 196 LITYPYQVVKT 206
                  39*******97 PP

>> PF13493.1  Domain of unknown function (DUF4118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3   0.00096       4.4      41      64 ..      54      77 ..      52      92 .. 0.80
   2 ?    2.8   0.0     0.026   1.2e+02      40      56 ..     182     198 ..     179     210 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00096
    PF13493.1 41 alryGlraglisallaslllafff 64
                  l+ G++++li++ ++  ++++f+
  MMETSP0890-20130614|20399_1 54 ILWSGIFPALIASGISWSGFFYFY 77
                 59*************966655554 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.026
    PF13493.1  40 ialryGlraglisalla 56 
                  +al+yG++a l +al+ 
  MMETSP0890-20130614|20399_1 182 LALVYGSIAKLSAALIT 198
                  69************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.06
# Mc/sec: 603.61
//
Query:       MMETSP0890-20130614|20429_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.0  18.9        0.2   11.6  13.1    1.2  1  PF00892.15 EamA-like transporter family
        2.5    7.5  20.9        8.5    5.8  14.5    1.8  1  PF01027.15 Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  13.1   2.9e-05       0.2       2     123 ..       8     132 ..       7     134 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.9e-05
   PF00892.15   2 swaiyfvlskklles...vspltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvll 123
                  s+++++++++ ++++    + ++++ + +l+++i ++++++++  + +   s+ ++la++l gl+ ++  +++f +a +++s ++ +li+++e v+  l+  +++ + + +++l+g +lill +++
  MMETSP0890-20130614|20429_1   8 SFSVFIFIARAASREcpnAPIIFAASLGSLMSFIgVALFAAITSTSIVTTDSPLFFLAIILDGLV-VGSVVIAFSIAPRYVSGAQLGLISLIEIVLGPLYILIFFSQYPPFFTLIGGILILLTLFV 132
                  56667777777777778888999999999999999999999999998778888888888888888.577777888889*******************************************99875 PP

>> PF01027.15  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  14.5    0.0012       8.5      76     167 ..       2     109 ..       1     145 [. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0012
   PF01027.15  76 tlleGltlgpillvyt........gsivlqafllTaavfgglslyalttkrdlsflggfllmgli...glivaslvnif.lp...ssalelli.saigvllfsglily 167
                  ++++Gl+++++++++          +i++ a l++++ f+g +l+a+ t+ ++    + l++  i   gl+v s+v  f ++    s+ +l + s+i ++l  ++il+
  MMETSP0890-20130614|20429_1   2 AIVTGLSFSVFIFIARaasrecpnAPIIFAASLGSLMSFIGVALFAAITSTSIVTTDSPLFFLAIildGLVVGSVVIAFsIApryVSGAQLGLiSLIEIVLGPLYILI 109
                  789*********9988999*****9************************99999888888654444788899999996632257733344444355555554455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.71
# Mc/sec: 708.78
//
Query:       MMETSP0890-20130614|20437_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-45  154.3   0.0    2.7e-45  153.7   0.0    1.2  1  PF01652.13 Eukaryotic initiation factor 4E
  ------ inclusion threshold ------
      0.064   12.7   0.0        4.9    6.7   0.0    2.5  2  PF06462.7  Propeller


Domain annotation for each model (and alignments):
>> PF01652.13  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0     4e-49   2.7e-45      18     165 .]      11     159 ..       3     159 .. 0.95

  Alignments for each domain:
  == domain 1    score: 153.7 bits;  conditional E-value: 4e-49
                  TTS-HHHH-EEEEECCECHHHHHHHCTSHGGGS.S-SS-EEEEEETT--SSTTTCCCH----EEEEEE--...-HHHHHHHHHHHH---TT---SSSB---EEEE---EEEEEE-BS-TTHHHHHHH---HHHHHCT-SS-B..EEE-H CS
   PF01652.13  18 ksesyedslkevvtfdsveeFwslynnikkpse.LplksdyhlFkegikPmWEdpankkGGkwvirlkkkskkeldelWeelllaliGesleeaedeicGvvlsvRkkedrisvWtknasdeeakkkigkklkevlelpekeklefkah 165
                  +++++ + + ++++fdsve F+++y+++kkps    +++dyh+F+egi P WEdp+nk+GGkw+irl+k+     + +Weellla+iGe++ + +d+icG+v+s+R+++d+is+W+ +a+d+ea+ k+++ +k++l+lp+  +le+k+h
  MMETSP0890-20130614|20437_1  11 STQNFASAIVKIGSFDSVEGFFGIYDHLKKPSApQCISTDYHVFREGITPTWEDPRNKNGGKWIIRLRKTVDGLSSLYWEELLLAIIGEQFGDLTDHICGAVISIRTNDDIISLWNVDANDQEANLKMRDLIKDILQLPNFVQLEYKRH 159
                  4689***************************9834589*****************************************************7667**********************************************99***988 PP

>> PF06462.7  Propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00072       4.9       5      21 ..      46      61 ..      46      61 .. 0.92
   2 ?    3.6   0.0    0.0069        47       9      16 ..     163     170 ..     123     182 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00072
    PF06462.7  5 avtndGtvwfRtGvspd 21
                 ++++d +v+ R+G++p+
  MMETSP0890-20130614|20437_1 46 CISTDYHVF-REGITPT 61
                 8999****9.*****96 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0069
    PF06462.7   9 dGtvwfRt 16 
                   ++vw+R+
  MMETSP0890-20130614|20437_1 163 RNHVWHRS 170
                  48*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:01.09
# Mc/sec: 521.04
//
Query:       MMETSP0890-20130614|20452_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-38  130.0   0.3    5.2e-36  124.2   0.2    2.2  1  PF00297.17 Ribosomal protein L3
     0.0037   16.7   0.0      0.013   14.9   0.0    1.9  2  PF12125.3  D domain of beta-TrCP


Domain annotation for each model (and alignments):
>> PF00297.17  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.2   7.6e-40   5.2e-36       1     262 [.      63     266 ..      63     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 124.2 bits;  conditional E-value: 7.6e-40
                  ----EEEEEE-------STTSEEE-EE-EBE---EE----B----S-----------SS---TSSSTTBSS--------HTTTTGGGS-S---EE--EE-TTSSS..SS-S...S-----EE-----CHHHHHHHHTTTT..S-B-TTSS--SS-BEEEEE----------TTT-------TTTT--..--S-S----.-SSSS--SSS----------EEETTEB-SB---S-SSS-----TT-----S-EBE-B-------STS--B CS
   PF00297.17   1 KaGMthivreldkpgsktekkeeveavTvietppmvvvqvktyeetprGlrslktvwaehlseevkrrlyknedgkkaievelekikkkasvkrvlahtqkrklk..lkqk...kahlaeirvnggtiaekvdfareelevgktvkvedvFeegelvdvigvtkGkGfeGvvkRwgvkklprkhgrgl.lRkvgsiGa.whparvlktvkraGqkGyekrtelnkkivridkekeitPmGGfvhyGevendlllvkGsvpGpkkrlvtl 262
                  KaGM+  +         +e+ ++ +a Tv+++  ++vvqvk+ +                            + g+++++v++  +k k +++++++h++k + +  +  +    + l e+r+  +          + l vg+++++ ++F  g++vd++gvt+GkGf+Gv+kR+g+ ++p++hg+++ +R +gsiG+  +p++v+k++k +G++G ++rt++n+ + rid+                 ++l++v+G++pG+++ +v++
  MMETSP0890-20130614|20452_1  63 KAGMMASW---------DEH-GNRHALTVLHVDGCRVVQVKEAD----------------------------KHGYTGLQVGVCPRKGKHVNRPMMGHFAKWSPSnqVDYPymlLRRLEEFRISPK----------AVLPVGHPLNA-NHFVPGQFVDIQGVTRGKGFQGVMKRHGFAGQPASHGNSKaHRVPGSIGQcATPSKVFKGKKLPGRMGGKRRTIQNLLVHRIDN----------------IRNLIFVRGAIPGARGTIVRV 266
                  66666666.........444.88889999999999999998888............................89**************************98776123333111345555565555..........889999*****.***************************************99*********99********************************................89****************997 PP

>> PF12125.3  D domain of beta-TrCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     2e-06     0.013       2      23 ..     121     142 ..     120     148 .. 0.87
   2 ?   -1.9   0.0      0.34   2.3e+03      31      38 ..     270     277 ..     269     279 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2e-06
                  HHHTTS-HHHHHHHHHHHHHTS CS
    PF12125.3   2 kyFekWsesdQVdFvehLlsrm 23 
                   +F kWs s+QVd+   Ll r+
  MMETSP0890-20130614|20452_1 121 GHFAKWSPSNQVDYPYMLLRRL 142
                  69************99999887 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.34
                  HHHHHGGG CS
    PF12125.3  31 iNafLkPm 38 
                  i  +LkP 
  MMETSP0890-20130614|20452_1 270 IGKYLKPQ 277
                  678****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1154.61
//
Query:       MMETSP0890-20130614|20466_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-69  232.8   0.1    5.1e-69  231.9   0.1    1.5  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
    3.4e-18   64.9   1.5    1.6e-17   62.8   1.4    1.9  2  PF00364.17 Biotin-requiring enzyme
    1.9e-12   46.4   0.0    4.3e-12   45.3   0.0    1.6  1  PF02817.12 e3 binding domain
    1.7e-07   30.6   1.5      0.017   14.6   0.0    3.4  3  PF13533.1  Biotin-lipoyl like
     0.0045   17.2   0.6        3.3    7.9   0.0    2.9  2  PF13437.1  HlyD family secretion protein


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.9   0.1   1.9e-72   5.1e-69       3     230 ..     224     447 ..     222     448 .] 0.94

  Alignments for each domain:
  == domain 1    score: 231.9 bits;  conditional E-value: 1.9e-72
                  XXXXXXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-EE.EE-EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------GGGT----SEE---------------------EE-----.B--TT---------EEEEEEEEETTT--------HHHHHHHTT-HHHHHH CS
   PF00198.18   3 eeervplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnssvdeekeivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkpeeleggtftisNlGmlGvtsftPiinppqvaIlavgrikerpvvkegeivirkvmtlslsaDHRvidGaeaarFlntlkellenperll 230
                  ++++ p s++rk+i krltes qt+Phf++s +v+++++ a+rk+l++      +k++++d++i+avalal+++P  nss+  +++   ++s+++++Avatp GL++P++ +a+kk+l+ i++++++la++ar+gkl+p+e++ggt+++sNlGm+Gv++f+++inppq++Ilavg+       +++  +  ++mt  lsaD Rv+d+ +aa+Fl++ ++++ np++l+
  MMETSP0890-20130614|20466_1 224 PYTDTPASTMRKVISKRLTESRQTVPHFYTSIKVELDNIAAFRKQLQALIG---VKVSVNDIVIRAVALALQDVPRANSSW-IDGTAKPNNSIDVSVAVATPSGLITPIVFDANKKGLATISTDIRALAKKARDGKLQPHEFQGGTVSVSNLGMFGVSEFSAVINPPQACILAVGSGVPGFKLDDTMPKQITTMTSRLSADRRVVDEPTAAAFLQAYAHYIANPNLLV 447
                  67999******************************************9885...6**************************.566689****************************************************************************************854444466666777779999***************************9987 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   1.4   5.7e-21   1.6e-17      13      74 .]       2      63 ..       1      63 [. 0.97
   2 ?   -2.6   0.0       1.4   3.9e+03      24      39 ..     136     151 ..     135     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 5.7e-21
                 EE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEEE CS
   PF00364.17 13 kegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 74
                 ++gt+++++v++G++ +ag+v++eve++K+++++ea+++G+v++il++ G++v vg+++++i
  MMETSP0890-20130614|20466_1  2 EAGTIAKWKVSEGSSYAAGDVICEVETDKATVDFEAQDDGIVAKILAQAGNEVVVGSPIMVI 63
                 6789********************************************************97 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.4
                  ------CTSEEEEEES CS
   PF00364.17  24 vGdkVkagqvlaevea 39 
                  +G  + +g++l  ++a
  MMETSP0890-20130614|20466_1 136 KGGRITKGDILYALSA 151
                  5888999999887765 PP

>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.6e-15   4.3e-12       7      38 ..     115     146 ..     112     147 .. 0.96

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.6e-15
                  HHHHHHHHHTT--GGG---------B-HHHHH CS
   PF02817.12   7 PaaRkLAaekgidLsqvkGTGpgGRItkeDVe 38 
                  P+aR LA+ k+id+s+++G+G+gGRItk D++
  MMETSP0890-20130614|20466_1 115 PSARFLAQSKNIDVSSLEGSGKGGRITKGDIL 146
                  ******************************97 PP

>> PF13533.1  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.2e-06     0.017      10      37 ..       3      30 ..       3      38 .. 0.89
   2 !   11.4   0.4   6.3e-05      0.17      10      37 ..      40      67 ..      31      75 .. 0.88
   3 ?    1.2   0.0     0.094   2.6e+02      23      35 ..     139     151 ..     136     164 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.2e-06
    PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldsek 37
                 +G++++++V+eG++  +GDv+ e++ +k
  MMETSP0890-20130614|20466_1  3 AGTIAKWKVSEGSSYAAGDVICEVETDK 30
                 59*******************9988776 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 6.3e-05
    PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldsek 37
                 +G+V+++l++ G eV  G +++++ +++
  MMETSP0890-20130614|20466_1 40 DGIVAKILAQAGNEVVVGSPIMVIVEDE 67
                 8***********************8876 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.094
    PF13533.1  23 eVkkGDvLlelds 35 
                  +  kGD+L+ l+ 
  MMETSP0890-20130614|20466_1 139 RITKGDILYALSA 151
                  5679*****9986 PP

>> PF13437.1  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0012       3.3       7      39 ..       3      36 ..       1      39 [. 0.81
   2 !    7.0   0.2    0.0024       6.5       4      35 ..      37      69 ..      34      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0012
    PF13437.1  7 dGvVhevnvqegqvvaagdplaeiipt.delkve 39
                 +G++++++v+eg+  aagd++ e+  + +++ +e
  MMETSP0890-20130614|20466_1  3 AGTIAKWKVSEGSSYAAGDVICEVETDkATVDFE 36
                 7**********************99543444444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0024
    PF13437.1  4 ApvdGvVhevnvqegqvvaagdplaeiipt.de 35
                 A+ dG+V+++ +q g+ v  g p++ i+ + ++
  MMETSP0890-20130614|20466_1 37 AQDDGIVAKILAQAGNEVVVGSPIMVIVEDeKD 69
                 7779***********************976333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:01.22
# Mc/sec: 879.97
//
Query:       MMETSP0890-20130614|20477_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-38  131.7  19.3    2.7e-38  131.7  13.4    1.5  2  PF00487.19 Fatty acid desaturase
    1.1e-16   60.2   0.3    2.4e-16   59.1   0.2    1.6  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.18   1.2e+03     116     159 ..     101     155 ..      95     158 .. 0.63
   2 !  131.7  13.4   3.9e-42   2.7e-38       3     256 ..     154     439 ..     151     440 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.18
   PF00487.19 116 lerrklrkrrrrkg...........lalllallilalllalaglllllsglgall 159
                  +er +++ r + k+            + +l++l++a+++al++ ++ + ++++l+
  MMETSP0890-20130614|20477_1 101 FERGYRSLRIKLKKlglfdssplyyAYKQLSTLMIAVFAALIITTCNTTSTSHLF 155
                  5555555555555566666666666666777777777777777766666666665 PP

  == domain 2    score: 131.7 bits;  conditional E-value: 3.9e-42
   PF00487.19   3 wlllllalllaalllsilvnlaHealHgalfrsrrlnrvlglllalllgissla.wrrsHlrhHhytgnae.......kDpdsalr..........rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkg..............lalllallilalllalagl.llllsglgalllyvvplalaltvlllvnyleHygletednnaardfyenqlltssn..segswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvrynsl 256
                  +++ l ++++++++++++++l+He lH+++f++r ++r++g+l++ l ++ s a w ++H+ hH++ + +        +Dpd+ ++          +l ++  + ++   ++  y  ll+l   ++l ++ ++   +   + r+               l l l  l++ ++lala++  ++++ + ++l+  v+  lal  ++ ++   H+g+ + d +++ d++  q+ t++n   ++  ++ +++g+l+y++eHHlfP+vp+++L ++++  +e++kehg+ y+++
  MMETSP0890-20130614|20477_1 154 LFARLTGAIMLGIFFQQCGWLCHEILHHQVFPNRNIGRFVGYLWGNLAQGFSVAwWTNKHNTHHAVPNVHAtgadaqnGDPDIDTMpflawsrpmlQLAKSKFSTFMVSHQHIAYFPLLALARLSWLEQSLAYVLNFDETAGRQVkgapgelkpvphekLELTLLGLHYSWYLALAWAhPTWFDTFLFILVSNVACGLALASVFGLG---HNGMAVYDAAKRPDYWKLQVTTTRNiaQDRFGFVHWFCGGLDYQVEHHLFPSVPRHNLGKVSALCKEFCKEHGISYHET 439
                  66778899***************************************888888889********66666666666699********9999999999777777777777777777777776666666665555555554444444466777******877777777777777777777766777777777777777777777777777...*************************99999**********************************************976 PP

>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   3.5e-20   2.4e-16       2      76 .]      11      81 ..      10      81 .. 0.95

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 3.5e-20
                 BEHHHHHTCECTTEEEEECTTEEEETTTTTTTHTSTTHHHHTT---BHHHHHHHHHHHHHHHHHHHGCGBE--BE CS
   PF00173.23  2 ftleevskhnkekdswvvirgkVYDvskflkdhpggasailafaGkDaTeafenashseaaekllekyyrvGrld 76
                 f ++ev kh +++d+++v+++kVYDvs +  dhpgg ++i ++aG DaT+ f   +h +   k l + +++G ld
  MMETSP0890-20130614|20477_1 11 FAWAEVTKHRTPNDAYLVVNNKVYDVSGW-HDHPGG-DVIFTAAGDDATDTF-TMFHANGTSKHLDQ-FCIGSLD 81
                 88*************************77.79****.***************.*****999999999.9***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:01.26
# Mc/sec: 886.27
//
Query:       MMETSP0890-20130614|20487_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.34s 00:00:00.82 Elapsed: 00:00:00.74
# Mc/sec: 705.95
//
Query:       MMETSP0890-20130614|20513_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-19   70.1   0.1    1.6e-19   69.9   0.1    1.1  1  PF00924.13 Mechanosensitive ion channel
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.18   12.1   0.0    1.2  1  PF11799.3  impB/mucB/samB family C-terminal


Domain annotation for each model (and alignments):
>> PF00924.13  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   2.3e-23   1.6e-19      51     199 ..       2     158 ..       1     165 [. 0.89

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 2.3e-23
   PF00924.13  51 aGiillfekpfkiGDlveig.....gieGtVediglrttkirtfdgrivtiPnsslvtssikNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlk....dkeltvvldefgdss...lnfevrvfvktvvpeeylsvqseinlrikkil 199
                  aGiil +++ f+i+D v+ig      i+G+V ++g+ +t+ir  d++i  iPns+++ + i+N+sr  ++++++ si+++ + d+++l+  l  l++ l   p+v++      +l v+l +f+ds+   +++e+   +++   +  ++++++i+  i+  l
  MMETSP0890-20130614|20513_1   2 AGIILAISNAFSIDDDVQIGaqaddAISGYVYKLGWYSTHIRGYDNKISSIPNSKIAGEIIINFSR-AQHKQFTSSITLRRD-DFQRLSSFLPHLRKNLATLPHVIDdriaHRTLRVNLARFTDSGepqIDIELHLATND--DDVFFEIREKIYNAIQHSL 158
                  8*****************************************************************.999999999999977.5699********************999988999999999999732245555555555..89999****9999998766 PP

>> PF11799.3  impB/mucB/samB family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.18      18     125 ..      41     156 ..      32     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.6e-05
                  HT-------..............-----S-SEEEEEEE-.....---SHHHHHHHHHHHHHH..HH..HHHHTSEEEEEEEE.E-TTS-EEEE---------TTHHHHHHH---HHHHHHHH- CS
    PF11799.3  18 larGidaep.............visprkepkSissektfesdvssieeleelllrLaeelae..rlrrrkllaktvtiklkvfdrntrqhtlsdeqvtltqpsnddkellraalesllnalke 125
                  + rG+d+               +  +r + k+++s+ t+++  ++ ++l+ +l  L   la+   +++   + +t+ + l    r t + + +    +l+  +ndd+ ++++  + ++na+++
  MMETSP0890-20130614|20513_1  41 HIRGYDNKIssipnskiageiiINFSRAQHKQFTSSITLRR--DDFQRLSSFLPHLRKNLATlpHVIDDRIAHRTLRVNLA---RFTDSGEPQID-IELHLATNDDDVFFEIREK-IYNAIQH 156
                  567776222333355566666655689999*********87..888899999999*******8888888888888899995...56666665555.89999**********9999.9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 681.56
//
Query:       MMETSP0890-20130614|20517_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-11   44.2   0.0    1.9e-11   43.8   0.0    1.2  1  PF13577.1  SnoaL-like domain
  ------ inclusion threshold ------
      0.039   13.5   0.1        0.4   10.2   0.0    2.1  2  PF00866.13 Ring hydroxylating beta subunit
       0.08   12.5   0.6       0.15   11.6   0.4    1.4  1  PF04995.9  Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> PF13577.1  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   4.2e-15   1.9e-11       2     126 ..      34     161 ..      33     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 4.2e-15
                  HHHHHHHHHHHHHH---TTT---HHHHHTTB-----EEE---..--B---HHHHHHH---HHHHH.--EEE----EEEE--..-EEEEEEEEEEE----------E...EEEEEEEEE--.----EEEEE CS
    PF13577.1   2 rledreeIrdlvaryaralDtkdaeeladlFtedavldfggvgpgvlegrdairalvrealdgra.ltqHllsnplieldg..dtAtgrwyllathtlkgdgakkll.aggryedeyvre.dggWrItrr 126
                  +le+re+ r+  a y r +D+ d  ++++ Ft da+ d++++  +     +++     + l++    + H ++n +i +d   +tA+ ++y++a h+   dg+ +   ++gry d +v + dg  +I rr
  MMETSP0890-20130614|20517_1  34 ELEAREQMREYAALYTRGIDRLDPVLVRAPFTHDAIMDIPNI--DKDLPIAEFSVGATNFLGKSLvSSLHNITNSHIIFDKsmKTAKSETYFIANHFKIIDGSVVNAaVYGRYCDIWVQTnDGIFKIIRR 161
                  79**************************************97..333355555555555555555899***********88678************99999987766588**********5555999887 PP

>> PF00866.13  Ring hydroxylating beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.064   2.9e+02      51      75 ..      25      49 ..      10      52 .. 0.77
   2 ?   10.2   0.0   8.8e-05       0.4     109     138 ..     136     166 ..      98     171 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.064
                 HHHH---HHHHTSTT-GGGSS--EE CS
   PF00866.13 51 rrgLedRVrrletgrawaedPpsrt 75
                 +r+L++R++ le + ++ e  + +t
  MMETSP0890-20130614|20517_1 25 YRQLRRRIKELEAREQMREYAALYT 49
                 799******9999988877665555 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.8e-05
                  EEEEE---EEEEEE-----.-EEEEEEE--S CS
   PF00866.13 109 evdvfageredvLrrsgdg.lkiarrkvlld 138
                      ++g++ d + +++dg +ki rrk+l+d
  MMETSP0890-20130614|20517_1 136 VNAAVYGRYCDIWVQTNDGiFKIIRRKILYD 166
                  456789**********************998 PP

>> PF04995.9  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   3.3e-05      0.15      27      44 ..      23      40 ..      10      42 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.3e-05
    PF04995.9 27 rrrrrllrelarleareq 44
                 + +r+l+r++++leareq
  MMETSP0890-20130614|20517_1 23 ILYRQLRRRIKELEAREQ 40
                 45899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 856.40
//
Query:       MMETSP0890-20130614|20567_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.80
# Mc/sec: 185.72
//
Query:       MMETSP0890-20130614|20583_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0041   15.5   6.6     0.0049   15.2   4.6    1.0  1  PF13166.1  AAA domain
  ------ inclusion threshold ------
      0.052   13.1   0.8       0.77    9.4   0.0    2.6  2  PF12460.3  NER and RNAPII transcription protein n terminal
       0.06   13.5   0.3      0.098   12.9   0.2    1.3  1  PF04954.8  Siderophore-interacting protein
      0.061   12.9   2.5      0.093   12.3   0.3    2.1  2  PF08656.5  DASH complex subunit Dad3
       0.16   11.5   2.0       0.35   10.4   1.3    1.7  1  PF04627.8  Mitochondrial ATP synthase epsilon chain
       0.16   11.5   6.0       0.76    9.3   4.2    2.0  1  PF05064.8  Nsp1-like C-terminal region
       0.17   11.2  11.7       0.17   11.1   2.3    1.9  2  PF00038.16 Intermediate filament protein
       0.19   11.1   4.2       0.94    8.9   0.4    2.3  2  PF03255.9  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
       0.19   11.7   0.9        0.4   10.6   0.6    1.5  1  PF08930.5  Domain of unknown function (DUF1912)
        0.2   11.2   5.8        3.9    7.0   0.4    2.2  2  PF08286.6  Spc24 subunit of Ndc80
        0.5   10.1  13.1       0.81    9.5   9.1    1.4  1  PF13863.1  Domain of unknown function (DUF4200)
        1.1    8.0   8.0        0.8    8.5   3.7    1.8  2  PF04518.7  Effector from type III secretion system
        1.5    9.1   9.3        3.5    7.9   0.9    3.1  4  PF04102.7  SlyX
        1.9    8.4  12.7        0.8    9.6   1.9    2.2  2  PF09304.5  Cortexillin I, coiled coil
        2.3    6.4   4.9        2.8    6.1   3.4    1.1  1  PF04632.7  Fusaric acid resistance protein family
        3.3    7.4  11.2       0.66    9.7   1.7    3.0  2  PF12329.3  TATA element modulatory factor 1 DNA binding
        4.7    7.5   7.9        2.8    8.3   1.8    2.4  2  PF13600.1  N-terminal domain of unknown function (DUF4140)
          7    6.1  10.4        5.8    6.4   0.4    2.0  2  PF03962.10 Mnd1 family
        8.2    6.8   6.2        4.1    7.8   1.9    2.0  2  PF03955.9  Adenovirus hexon-associated protein (IX)


Domain annotation for each model (and alignments):
>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   4.6   6.8e-06    0.0049     357     461 ..      41     148 ..      11     159 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.8e-06
    PF13166.1 357 elesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelk..edid.eyekklkklekkinslekeleklekeikklekeikelekelkneepta 461
                  e ++++d i+++ +l+ + +++i++  e+ +++k  +++++++++ +++ae +  +    +++k+l+  +k+ ++le++ e+ e++i++l++ i  le++l++ ++++
  MMETSP0890-20130614|20583_1  41 EHSESQDLISDLRDLILRQQKEIQRRCERPTEHKYVQTDFEDQVQAAVAAEKSisQAARrALQKDLRIAAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQDKDNII 148
                  445666777777777777777777777777777777777777777666643321122224667777777777777777777777777777777777777777766665 PP

>> PF12460.3  NER and RNAPII transcription protein n terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.33   2.3e+02      40      58 ..      32      50 ..      18      56 .. 0.76
   2 ?    9.4   0.0    0.0011      0.77      12      51 ..     111     150 ..     107     151 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.33
    PF12460.3 40 eyLtsedpeiRakavelLs 58
                  +Ltse+ ++++++  l+s
  MMETSP0890-20130614|20583_1 32 ASLTSEKAREHSESQDLIS 50
                 5899999999988877776 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0011
    PF12460.3  12 kadssadqiaelvengkltLldlVesLGeyLtsedpeiRa 51 
                  k++s +++ +e  e++  +L  ++ +L+ +L + d++iR 
  MMETSP0890-20130614|20583_1 111 KQQSQLESKCEAYEAKIASLNHIIDHLEASLQDKDNIIRV 150
                  677888888888899************************5 PP

>> PF04954.8  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00014     0.098      60     109 ..      39     112 ..      11     116 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
    PF04954.8  60 a..aaagelllealrelal......................pagelyvwvagEasavkalRrhlvkergldreq 109
                  a  +++++ l++ lr+l l                       ++++++ va+E+s  +a Rr l k++ +  +q
  MMETSP0890-20130614|20583_1  39 AreHSESQDLISDLRDLILrqqkeiqrrcerptehkyvqtdFEDQVQAAVAAEKSISQAARRALQKDLRIAAKQ 112
                  22346788888888888886666666666665555554444488***********************9998887 PP

>> PF08656.5  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   0.00013     0.093       3      46 ..       8      55 ..       7      60 .. 0.82
   2 ?   -0.2   0.1         1   7.4e+02      16      38 ..     124     146 ..     108     150 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00013
    PF08656.5  3 pleqevLeeYqrLaenlkkLseelkeL....estespteelldnLReL 46
                 +l qevL+    ++++l  L++++++L      ++s+++ l+ +LR+L
  MMETSP0890-20130614|20583_1  8 DLSQEVLRSCGVMSKELSILQSTMASLtsekAREHSESQDLISDLRDL 55
                 588************************5443334444559******98 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1
    PF08656.5  16 aenlkkLseelkeLestesptee 38 
                    ++ +L++ +++Le + +++++
  MMETSP0890-20130614|20583_1 124 EAKIASLNHIIDHLEASLQDKDN 146
                  45666677777777666555555 PP

>> PF04627.8  Mitochondrial ATP synthase epsilon chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.3   0.00048      0.35      18      47 ..      95     124 ..      86     125 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00048
                  HHHCTTSS-CSSS-HHHHTTS---EEEEBB CS
    PF04627.8  18 AravRqaLKeelrvaAekraeievkytkwe 47 
                  ++a R+aL ++lr aA+++ + e k   +e
  MMETSP0890-20130614|20583_1  95 SQAARRALQKDLRIAAKQQSQLESKCEAYE 124
                  7899***************99999877665 PP

>> PF05064.8  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.2    0.0011      0.76      65     106 ..      89     131 ..      28     145 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0011
    PF05064.8  65 sevvka.eqeqnkldqeLdfvesqqdeLeslLdryEeeieell 106
                   +  ++ +++ ++l + L +  +qq++Les  ++yE++i +l+
  MMETSP0890-20130614|20583_1  89 AAEKSIsQAARRALQKDLRIAAKQQSQLESKCEAYEAKIASLN 131
                  444444145667899************************9987 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.3   0.00024      0.17      52     126 ..      20      94 ..       9      98 .. 0.91
   2 ?    5.2   0.9     0.015        11     209     250 ..     104     145 ..      93     175 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00024
   PF00038.16  52 yekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakv 126
                    kel+ l++++ +lt+e+ar + e + l  +l+dl  + +ke+++r +  +e + ++ d+++++ a v +e+ +
  MMETSP0890-20130614|20583_1  20 MSKELSILQSTMASLTSEKAREHSESQDLISDLRDLILRQQKEIQRRCERPTEHKYVQTDFEDQVQAAVAAEKSI 94 
                  57899*****************************************************99999999998888876 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.015
   PF00038.16 209 ealrsakeeitelrrqiqsleieleslkkqkeslerqlaele 250
                  ++lr a ++ ++l  + ++ e++++sl +  + le++l++ +
  MMETSP0890-20130614|20583_1 104 KDLRIAAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQDKD 145
                  334444444444444444444444444444444444444444 PP

>> PF03255.9  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4    0.0013      0.94      38      81 ..      38      84 ..      18      93 .. 0.73
   2 ?    3.2   0.1     0.071        51       5      51 ..     116     162 ..     112     166 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
    PF03255.9 38 ekkleklkkeiysnLtpl...qrvqlaRhpeRPttldyiealledfv 81
                 +++ +   +++ s+L +l   q+ ++ R+ eRPt   y+++ +ed v
  MMETSP0890-20130614|20583_1 38 KAREHSESQDLISDLRDLilrQQKEIQRRCERPTEHKYVQTDFEDQV 84
                 4455555566666665533339999***************9888866 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.071
    PF03255.9   5 fekplaelekkieelkklaekkdvdvseeiekLekkleklkkeiysn 51 
                  +e++   +e+ki++l++++++ + +++++ + ++  l+++ ++ ++ 
  MMETSP0890-20130614|20583_1 116 LESKCEAYEAKIASLNHIIDHLEASLQDKDNIIRVGLQRTSRSSHQP 162
                  56777778889999999998888888888777777777777666655 PP

>> PF08930.5  Domain of unknown function (DUF1912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   0.00056       0.4       9      57 ..      78     125 ..      71     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00056
    PF08930.5   9 kdfeewvktqikinelamkaskkvleedkderakdaliryeskldaykf 57 
                   dfe+ v++ +  ++   +a+++ l++d    ak+   + esk +ay+ 
  MMETSP0890-20130614|20583_1  78 TDFEDQVQAAVAAEKSISQAARRALQKDLRIAAKQ-QSQLESKCEAYEA 125
                  69**************************9887776.5689*******86 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.3    0.0054       3.9      11      46 ..      20      60 ..      12      93 .. 0.82
   2 ?    7.0   0.4    0.0054       3.9      11      46 ..     109     144 ..      99     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0054
    PF08286.6 11 lakelndleselenlqseleelkeeleeleeqene.....g 46
                 + kel+ l+s++ +l+se+++ ++e ++l   +++     +
  MMETSP0890-20130614|20583_1 20 MSKELSILQSTMASLTSEKAREHSESQDLISDLRDlilrqQ 60
                 6799***********************99888888664431 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0054
    PF08286.6  11 lakelndleselenlqseleelkeeleeleeqeneg 46 
                   ak+ ++les+ e  ++++++l++  + le +++++
  MMETSP0890-20130614|20583_1 109 AAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQDK 144
                  589999************************999982 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.1    0.0011      0.81       4     106 ..      37     143 ..      34     146 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0011
    PF13863.1   4 ekkremeevqlaldakreeierkeeelkereeelekkqeelqeslikfnkflkd....neakreraekkaeeekkekkekeeeikklkaqleelkaeiekleeklee 106
                  ek re+ e q  +   r  i r+++e+++r e+  ++++   + + +++  +      ++a r++ +k  + ++k++ ++e++ +  +a++++l++ i++le+ l++
  MMETSP0890-20130614|20583_1  37 EKAREHSESQDLISDLRDLILRQQKEIQRRCERPTEHKYVQTDFEDQVQAAVAAeksiSQAARRALQKDLRIAAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQD 143
                  899*****************************999999999888889888886511114455555556677899****************************99985 PP

>> PF04518.7  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.58   4.2e+02     261     286 ..      19      44 ..      12      50 .. 0.77
   2 ?    8.5   3.7    0.0011       0.8     200     274 ..      61     142 ..      45     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.58
    PF04518.7 261 aileqLslLktlLasLsikkvkknde 286
                  +++++Ls L++ +asL+ +k  +++e
  MMETSP0890-20130614|20583_1  19 VMSKELSILQSTMASLTSEKAREHSE 44 
                  78899999999999999966555554 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0011
    PF04518.7 200 eealakle..kEkeqirsdikscerakavleella.....kvkadakltseqkkelldtlnsYkselnaileqLslLktlLa 274
                  +e++ + e  +E+++++ d +   +a  + e+ ++       ++d  + ++q+++l+ + + Y+ ++ ++ + +  L++ L+
  MMETSP0890-20130614|20583_1  61 KEIQRRCErpTEHKYVQTDFEDQVQAAVAAEKSISqaarrALQKDLRIAAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQ 142
                  5555555522699999999877666555544443301111467777************************999999998886 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.3   1.7e+03      32      47 ..      22      37 ..       9      48 .. 0.57
   2 ?    7.9   0.9    0.0048       3.5      15      37 ..      44      66 ..      40      95 .. 0.82
   3 ?    0.4   0.0       1.1   7.6e+02      31      50 ..     103     122 ..      88     128 .. 0.61
   4 ?    5.3   0.2     0.031        22       8      43 ..     115     150 ..     109     171 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.3
    PF04102.7 32 keidrlqrqlrllaer 47
                 ke++ lq  ++ l+++
  MMETSP0890-20130614|20583_1 22 KELSILQSTMASLTSE 37
                 3444455555544432 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0048
    PF04102.7 15 fqedtieeLNevvaeqqkeidrl 37
                   +d+i +L + + +qqkei+r 
  MMETSP0890-20130614|20583_1 44 ESQDLISDLRDLILRQQKEIQRR 66
                 5689****************986 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 1.1
    PF04102.7  31 qkeidrlqrqlrllaerlke 50 
                  qk+++  ++q ++l+++ ++
  MMETSP0890-20130614|20583_1 103 QKDLRIAAKQQSQLESKCEA 122
                  44444444555555555544 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.031
    PF04102.7   8 eLEiklafqedtieeLNevvaeqqkeidrlqrqlrl 43 
                  +LE+k    e  i +LN ++ + +  +++    +r 
  MMETSP0890-20130614|20583_1 115 QLESKCEAYEAKIASLNHIIDHLEASLQDKDNIIRV 150
                  566666666666666666666666555555555544 PP

>> PF09304.5  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.9      0.06        43      35      78 ..      14      63 ..       6      83 .. 0.72
   2 ?    9.6   1.9    0.0011       0.8      29      70 ..     100     144 ..      81     159 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.06
    PF09304.5 35 L......akqkdeLksllasleaqkaerekrlrelqakidellknlekek 78
                 L       k+   L+s +asl ++ka  +   ++l +++ +l    +ke 
  MMETSP0890-20130614|20583_1 14 LrscgvmSKELSILQSTMASLTSEKAREHSESQDLISDLRDLILRQQKEI 63
                 44444336666779*********************999999865444444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0011
    PF09304.5  29 kvsqeeL...akqkdeLksllasleaqkaerekrlrelqakidel 70 
                  ++ q++L   akq+ +L+s+ ++ ea+ a+ ++ +  l+a +++ 
  MMETSP0890-20130614|20583_1 100 RALQKDLriaAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQDK 144
                  55677778889******************************9985 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.4    0.0039       2.8     232     325 ..      24     139 ..       9     171 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0039
    PF04632.7 232 lsslarllaalraaaaatppelaalldelaa.............alaaeeleaavaaLrarlaalrpeae.adsdtaaallarlaellaeladalaalralqaaiaa.........r 325
                  ls l+  +a l  + a++++e ++l+ +l++             +  + e++   +  +++++a+ ++++   +++++al+  l+  +++ +++ ++++a +a ia+         +
  MMETSP0890-20130614|20583_1  24 LSILQSTMASLTSEKAREHSESQDLISDLRDlilrqqkeiqrrcE-RPTEHKYVQTDFEDQVQAAVAAEKsISQAARRALQKDLRIAAKQQSQLESKCEAYEAKIASlnhiidhleA 139
                  677788888888888888888888888888877777777776531.34444444445555554333333336677888888888888888888888888888888876666554440 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.0      0.37   2.7e+02      40      68 ..      22      50 ..      19      73 .. 0.66
   2 ?    9.7   1.7   0.00092      0.66      37      67 ..     101     131 ..      88     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.37
    PF12329.3 40 kknkelekeieelkkkleklekeleelee 68
                 k+++ l++++++l+++ ++  +e ++l +
  MMETSP0890-20130614|20583_1 22 KELSILQSTMASLTSEKAREHSESQDLIS 50
                 66666777777776555555555554433 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00092
    PF12329.3  37 kLrkknkelekeieelkkkleklekeleele 67 
                   L+k+++ + k++++l++k e  e+++++l+
  MMETSP0890-20130614|20583_1 101 ALQKDLRIAAKQQSQLESKCEAYEAKIASLN 131
                  4777777788888888888888888888775 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.36   2.6e+02      66      78 ..      36      48 ..      14      69 .. 0.50
   2 ?    8.3   1.8    0.0038       2.8      52      99 ..      93     140 ..      73     144 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.36
    PF13600.1 66 daaseelaeleae 78
                 +++++e++e ++ 
  MMETSP0890-20130614|20583_1 36 SEKAREHSESQDL 48
                 2223333333333 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0038
    PF13600.1  52 svsvrrrdlqekdadaaseelaeleaelraledelarleaekealear 99 
                  s+s + r++ +kd + a++++++le + +a+e+++a+l+  ++ lea 
  MMETSP0890-20130614|20583_1  93 SISQAARRALQKDLRIAAKQQSQLESKCEAYEAKIASLNHIIDHLEAS 140
                  444444444446777777777888888888888888777777777765 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.3     0.045        32      63     158 ..      41     137 ..       4     140 .. 0.67
   2 ?    6.4   0.4     0.008       5.8      62      96 ..     111     145 ..     103     164 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.045
   PF03962.10  63 akkklkteleklkkeleelkqrikelqaeiekekkkreet..eereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDni 158
                  ++++ ++ ++ l+  + + +++i++ +++  + k ++ +   + +++   e++  +  +++l+k+l+  a   ++++e++ e+ e  ++s+n + D +
  MMETSP0890-20130614|20583_1  41 EHSESQDLISDLRDLILRQQKEIQRRCERPTEHKYVQTDFedQVQAAVAAEKSISQAARRALQKDLR-IAAKQQSQLESKCEAYEAKIASLNHIIDHL 137
                  3344455555555555555555555555555555555544444555566677777777777888887.666777788888888888888888887765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.008
   PF03962.10  62 eakkklkteleklkkeleelkqrikelqaeiekek 96 
                  +++++l++++e++++++++l+  i+ l+a+++++ 
  MMETSP0890-20130614|20583_1 111 KQQSQLESKCEAYEAKIASLNHIIDHLEASLQDKD 145
                  55667777777777777777777777777777664 PP

>> PF03955.9  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.3   1.7e+03      80     104 ..      12      36 ..       5      41 .. 0.72
   2 ?    7.8   1.9    0.0057       4.1      42     108 ..      74     143 ..      63     144 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.3
    PF03955.9  80 elkskvsaleekltvllaeLeelkq 104
                  e+ ++   ++++l++l+ ++++l+ 
  MMETSP0890-20130614|20583_1  12 EVLRSCGVMSKELSILQSTMASLTS 36 
                  4445555678889999999888876 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0057
    PF03955.9  42 tyatvs.sstldtaaaaaastsaaaata..rslaeeveslselkskvsaleekltvllaeLeelkqqlae 108
                  +y +   + ++++a aa++s+s+aa  a  ++l +  ++ s+l+sk +a e k++ l   +++l+++l++
  MMETSP0890-20130614|20583_1  74 KYVQTDfEDQVQAAVAAEKSISQAARRAlqKDLRIAAKQQSQLESKCEAYEAKIASLNHIIDHLEASLQD 143
                  5554444778888889998888888655236778888888999999999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1359  (0.0994002); expected 273.4 (0.02)
Passed bias filter:                      658  (0.0481276); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.68u 0.46s 00:00:01.14 Elapsed: 00:00:01.03
# Mc/sec: 421.11
//
Query:       MMETSP0890-20130614|20580_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   80.2   0.3    1.9e-22   79.5   0.2    1.3  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    4.4e-09   36.0   0.0    1.3e-08   34.5   0.0    1.6  1  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
     0.0054   16.4   0.7      0.037   13.7   0.3    2.4  2  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.2   4.1e-26   1.9e-22      94     272 .]      81     362 ..       8     362 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 4.1e-26
                  CTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-....-SCHHHHC-EEEEEEEEETTCEEE...............................................................................................................EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SEEE-GGGBSCHHH--BTTSSCEEEEEEEEEE-...--TT---EEEEEESS-TT-EEEEETTEEEEE-HHHHTTC.EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
   PF00443.24  94 ykQqDahEfllflLdqlhedlnrlnkkektekqkaedsndslitdlfkgqlksrlkclecknv...............................................................................................................kvklkrlPeiLiihlkRfkyseerssnkKlnekvefpleLdlssyvneekkeeseskpkkYeLvavvvHs...GslssGHYvayvknneknkWlkfdDetvtevkeeevlke.saYvlfY 272
                   + +DahE+l++lL++l +++        ++k++++ +++ +i ++f+ +l + + c+ec++v                                                                                                                ++++ lPe L + + R+   + + +  Kln+kv +   Ldl++++++e     +s +++Y+L+a+v+H    Gs   GHY++y+  +++ +W+ +dDe+v++++ ++   + ++ +lfY
  MMETSP0890-20130614|20580_1  81 GHMEDAHECLTYLLERLLDACAI----DFFGKRDENWEKSTIIYNIFGLDLVQLVNCKECNHVinteitelmlrlnatlgldaqalaaacqgnasaqikrrrtlflrkrkaalssqrysyknvdddlseddlseidhagppptsisellkyffaaeqlegyacdnckqrdtsskGLRFQLLPESLALYIDRI-PAFGSDF-GKLNRKVALDPLLDLDHLLANE-----QSSNYIYRLYAIVCHLdfwGSTFFGHYITYIL-DNQCEWWLLDDESVKKIEWSDLKATvNPDLLFY 362
                  2568*************999965....3677777788889********************************************************************************************************************************************************.5555555.9*******************76.....9**************766589999********.999**************9544333358888888 PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.9e-12   1.3e-08      80     295 .]      81     343 ..      59     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 2.9e-12
    PF13423.1  80 geqqdvqeanrFileqlslell.tlkvdifhererdkseaesslselfgtklisqnrciscqaek..vkeesllnlelpyppsek.........................................................giklenileeslnseknkeikcesckkkssaevakkftslPpiLgIclkrynekefgakrlntkvdiplelrlphfiqddeqenekplsgefkyeLqavVchigd..sltsghlvSlirvaeseksqWylFnDfrv 295
                  g  +d +e+ +++le+l      ++       +++++ e+++ + ++fg++l++   c++c+     + +e +l l+  +    +                                                           +++++l++++++e+ +   c++ck+    +   +f+ lP+ L++ + r     +   +ln+kv +   l+l+h ++++       +s++++y+L a+Vch +   s   gh++++i  +   + +W l +D++v
  MMETSP0890-20130614|20580_1  81 GHMEDAHECLTYLLERLLDACAiDFF-----GKRDENWEKSTIIYNIFGLDLVQLVNCKECNHVIntEITELMLRLNATLGLDAQalaaacqgnasaqikrrrtlflrkrkaalssqrysyknvdddlseddlseidhagppPTSISELLKYFFAAEQLEGYACDNCKQRDTSSKGLRFQLLPESLALYIDRIPAFGSDFGKLNRKVALDPLLDLDHLLANE-------QSSNYIYRLYAIVCHLDFwgSTFFGHYITYILDN---QCEWWLLDDESV 343
                  55677777777777776443330333.....468888899999999***999999999888875411334444444444443334677788888889999999999999999*****************************9******************************************99999999997666689*****************9664.......5899***********998645559*******994...669******987 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   8.2e-06     0.037      23      55 ..       6      40 ..       2      49 .. 0.75
   2 ?   -0.9   0.0       0.3   1.3e+03      18      48 ..      80     114 ..      78     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.2e-06
                 HHHHHHHHHHHHHHHHHHHC..TTHHCHHHHHHHH CS
   PF04212.13 23 eAlelYkeAlelLlqalkye..pnperrealrqki 55
                 +A ++Y++A+++L++++++e   +++++e+++qk 
  MMETSP0890-20130614|20580_1  6 AARDAYTHAQKYLNEMVQAEssEEDSDDEIFEQKQ 40
                 799*****************665666667755553 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.3
                  TT-HHHHHHHHHHHHHHHHHHHHHC....TTHHCH CS
   PF04212.13  18 agkyeeAlelYkeAlelLlqalkye....pnperr 48 
                  ag+ e+A e+ +  le Ll a++ +    ++++++
  MMETSP0890-20130614|20580_1  80 AGHMEDAHECLTYLLERLLDACAIDffgkRDENWE 114
                  78999999999999999999999887776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:01.08
# Mc/sec: 994.04
//
Query:       MMETSP0890-20130614|20600_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   31.0   0.0    1.3e-07   31.0   0.0    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   9.3e-12   1.3e-07       4      45 ..       2      45 ..       1      46 [] 0.86

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 9.3e-12
                 G-----EEE.....----------EEEEEGGGSTTSBCCHCHHH CS
   PF00291.20  4 gvgpTPlvrl..psallsklgganvflKlEslnptgSfKdRgaa 45
                  vg+TP+v++  + + l    g +v++K+E +np  S+KdR a+
  MMETSP0890-20130614|20600_1  2 TVGNTPCVKMnrLVKDLDLPKGVEVYAKCEFFNPLSSVKDRLAV 45
                 589*******9625667777899******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       137  (0.0100205); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.39s 00:00:00.66 Elapsed: 00:00:00.64
# Mc/sec: 172.24
//
Query:       MMETSP0890-20130614|20598_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-17   62.4   0.0    4.3e-17   61.8   0.0    1.3  1  PF05005.10 Janus/Ocnus family (Ocnus)


Domain annotation for each model (and alignments):
>> PF05005.10  Janus/Ocnus family (Ocnus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   3.1e-21   4.3e-17       1     108 []      68     172 ..      68     172 .. 0.94

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 3.1e-21
   PF05005.10   1 LakvpevdideeGkfkYvlikvkikekdeskevvrglkkaeyHadiyekvkkeleklgleteclGGGriehdeekkkikvyGyskgf....Gkadheiakeilkkkykdyei 108
                  L+++ +v+id     kYvli+         +++vrg+++a yH+d    +  +l++lg++ ++lGGGri  + +kk++ vyG s+gf    G ++h +a+++l++ky+d++i
  MMETSP0890-20130614|20598_1  68 LDTINSVEID-MSLQKYVLIRAGN------RHLVRGTSSAIYHKDAAGPCVAQLRSLGIDYNVLGGGRIAVEPDKKTMLVYGFSYGFpwenGISKHDVAAKLLNQKYPDWTI 172
                  6789999999.8899***998766......99*******************************************************8777888***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.99
# Mc/sec: 433.28
//
Query:       MMETSP0890-20130614|20597_1  [L=953]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-24   83.6   0.0    1.5e-23   82.6   0.0    1.6  1  PF09103.5 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
    4.2e-06   26.3   0.2    2.1e-05   24.0   0.1    2.1  2  PF09169.5 BRCA2, helical
  ------ inclusion threshold ------
      0.088   11.8   0.5       0.17   10.9   0.3    1.4  1  PF07505.6 Phage protein Gp37/Gp68


Domain annotation for each model (and alignments):
>> PF09103.5  BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.3e-27   1.5e-23       1     114 [.     432     544 ..     432     548 .. 0.94

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 3.3e-27
    PF09103.5   1 salkkilegDasaskllvLlvskisseeeksnsnriieltDGwYsvkaslDipLtkllekgklkvgqkllvlgakllgsaeavsple........asesvlLvlkinstrrarwdakLGfyk 114
                  +alk+i+++Das+ +l++L+vs++          + +eltDGwY++ a+lD +L   ++ g ++vg+kl ++ a+l+g   + +p+e         +es++L l+ n++rrar dakLGf++
  MMETSP0890-20130614|20597_1 432 PALKAIIQHDASSRRLIILCVSRV-------LGFEALELTDGWYAISATLDEALAYRVRTGAITVGTKLCICSARLEG--GPIDPIEalipgsaaSNESLILHLQGNGVRRARSDAKLGFQS 544
                  69**********************.......78999*****************************************7..88899888888998778999********************87 PP

>> PF09169.5  BRCA2, helical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.066     3e+02      54      94 ..     293     335 ..     253     354 .. 0.66
   2 !   24.0   0.1   4.7e-09   2.1e-05     108     191 ..     332     425 ..     324     427 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.066
                  --S----TT...-S-S-----SSS..SS--TTTTTT----GGG CS
    PF09169.5  54 ektpsalsenrnkqlytlgvskkl..ievnsenaesfkfdlee 94 
                    tp+ +++ + ++   l+   ++   +vn+enae + f++e+
  MMETSP0890-20130614|20597_1 293 TATPQITVRPHRRSRLPLTADYHCpgAKVNAENAERLVFHIED 335
                  4445555544444445555566664469************997 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 4.7e-09
                  ------------------HHHHHHHHH.....-----TTS--H.....HHHHHHHHHHHHHHHHTSTT-TTT-SSSSSSHHHHHHHHHHHHHHH CS
    PF09169.5 108 qLaDggwLipsedgkaGkeefyralld.....tpGvDPkLise.....eWvenhyrWivwklaameralPeefanriltpervLlqlkyrydle 191
                  ++ Dg  +i+++ +   ++  y a+l+      pG+  +++++     +W  nhy+W vwk aa+er + ++ ++  l+ e+++ ++  r + e
  MMETSP0890-20130614|20597_1 332 HIEDGHAFIMNNTCMTQQHFGYSAVLQrlcelRPGLIGNILPNqatalAWTRNHYKWEVWKAAAIERRFLNYEKGSPLQFEKIVSRMDLRIEKE 425
                  5667777777777776665556554441111234543333332222237**************************9******999988887655 PP

>> PF07505.6  Phage protein Gp37/Gp68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   3.6e-05      0.17      65     176 ..     157     274 ..     119     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.6e-05
    PF07505.6  65 qeekleipatwkkprrvFvnSmsDlfhdevpdefiaevfevieea..pqhtfqiltKrierlrkllskealevll....lsnvwlgvsvenqaeaerriekLrkvpAavrfiSaEPLl 176
                   +++++ +a+ +   + F  S   ++h++ +++ ++ +f+ ++++  ++ht  + t  ++  +k+ ++ ++++++    ++   l +s+++++   +r+++L++ p +++f ++ PL 
  MMETSP0890-20130614|20597_1 157 MRRADTLFAAEDTVAKGFTGSKKTVIHSDATSKRMKTIFSSVNANelSKHTLHATTTNTSTNKKIQHTAQRRLSFqgarPPPSRLSTSLKENTVPVKRVQQLQAPPQKHKFTALRPLT 274
                  445666777778888889999999****************99876236899999998888888887777776665777799999********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.28u 0.39s 00:00:01.67 Elapsed: 00:00:01.08
# Mc/sec: 2114.56
//
Query:       MMETSP0890-20130614|20610_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 315.88
//
Query:       MMETSP0890-20130614|20608_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-64  215.1   0.0    1.8e-63  213.9   0.0    1.6  1  PF00069.20 Protein kinase domain
    1.4e-34  119.2   0.0    2.2e-34  118.6   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
     0.0071   16.4   1.0      0.018   15.1   0.0    2.2  2  PF00169.24 PH domain
     0.0076   15.2   0.3      0.021   13.7   0.2    1.7  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.092   12.3   0.1       0.19   11.3   0.1    1.5  1  PF01636.18 Phosphotransferase enzyme family
       0.14   11.3   7.4      0.069   12.3   3.6    1.5  2  PF10483.4  Histone acetylation protein 2
        2.3    6.6   7.2        5.8    5.3   1.4    2.3  2  PF07227.6  Protein of unknown function (DUF1423)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.9   0.0   9.4e-67   1.8e-63       1     260 []     214     520 ..     214     520 .. 0.95

  Alignments for each domain:
  == domain 1    score: 213.9 bits;  conditional E-value: 9.4e-67
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE........STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHHHHT.SHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.....................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee........kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvllk.akeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.....................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  y l++++G+Gs+G V+++++    +  A+K++    ++   +k+ vrE++++++l+H+ni+k+++++ +         d++y+v+e++++ dl+d++ ++++ls  +++ +a+q+l+gl y+Hs+g++HrD+K  N+L++++ +lki+DFGla+ l  ++++++lt++v+tr+Y++PE+ll+ +  y+ +vD+Ws+G++++e+++++++f g++  dq +++ ++ k   ++d +k                                          +   d++ +ll++dpa+R+ a ++l+h +l
  MMETSP0890-20130614|20608_1 214 YVLNKTVGKGSYGLVVSGTDLRADTPCAIKKIGDAFADLVDAKRIVREIRLMHNLDHENILKIYDCYAKfhdarreaFDDIYIVTELLQT-DLHDVIYARRPLSRAHVQYFAYQMLCGLGYMHSKGVVHRDIKCGNLLVSDQCQLKICDFGLARALpsKTEQQHLTEYVVTRWYRSPELLLScRAPYDGAVDIWSVGCVIAEMVNRHPLFAGRDVIDQIKRVVSVIKAVRPRDVEKLGFVTnakarayvqsieaseryttwnqvvpkladastssdkrSAGIDFVASLLRFDPANRPGAYKVLNHAFL 520
                  56889***********************************************************************************99.***************************************************************99*99********************8851568***************************99999999999999888888777654447889************************************************************885 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   1.1e-37   2.2e-34       3     201 ..     216     418 ..     214     446 .. 0.90

  Alignments for each domain:
  == domain 1    score: 118.6 bits;  conditional E-value: 1.1e-37
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE....SSSS......EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS.-HHHHHHSE..EEHHHHHHH---HHHHHHTT CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvct....keep......llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWm.apEslkekk..ftsksDvWsfGvllwEiftl 201
                  l+k++G+G++G Vv+gt      ++++ +a+K++ ++ a+  + +++++e+++m++l+h+ni+k++ ++        +      ++ivte+++  dL++++ ++  + l+ +++  fa+q+  G+ y++sk +vHrd+ + N L++++ + ki+DfGLar +  +++ +++ ++ +  +W+ +pE+l +++  +  + D+Ws G+++ E++++
  MMETSP0890-20130614|20608_1 216 LNKTVGKGSYGLVVSGTDL----RADTPCAIKKIgDAFADLVDAKRIVREIRLMHNLDHENILKIYDCYAkfhdA--RreafddIYIVTELLQT-DLHDVIYAR--RPLSRAHVQYFAYQMLCGLGYMHSKGVVHRDIKCGNLLVSDQCQLKICDFGLARAL-PSKTEQQHLTEYVVTRWYrSPELLLSCRapYDGAVDIWSVGCVIAEMVNR 418
                  6899************999....899********677889999*************************9966431..2567899*******975.9******98..9*******************************************************.5566677778889999988*******9999*****************984 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.3e-06     0.018       2     103 ..      17     108 ..      16     109 .. 0.85
   2 ?   -1.8   0.3       1.6   3.2e+03      57      59 ..     175     177 ..     139     217 .. 0.44

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.3e-06
                  SBEEEEEEEETSSSCEEEEEEEEETTEEE.EESSSSTTCECSECEEEECG.GEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   2 ikeGyllkksellktwkkryfvLtsnyLl.yfksskkksykapkgsipln.dctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                   +eG+l kk+ +l +w+ +++    n+ l y+ + +     ++ g + l+ +c+v  +++        ++n f++  + ++++++ a+s+ ++  W + +++++
  MMETSP0890-20130614|20608_1  17 TIEGWLRKKG-SLFSWRTYFVSVDANRFLsYYIKAS---GGRLAGRVKLTrKCKVVLDPR--------KENGFVLFADLGRTLKFAADSKSDVVLWKEIIESAC 108
                  589*******.**************76550555554...899999999962568888888........59***************************9999886 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.6
                  EEE CS
   PF00169.24  57 ass 59 
                  +++
  MMETSP0890-20130614|20608_1 175 DDE 177
                  111 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   1.1e-05     0.021      53     170 ..     253     367 ..     245     380 .. 0.72
   2 ?   -3.5   0.0         2   3.9e+03      13      27 ..     465     479 ..     463     511 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-05
    PF06293.9  53 lgetrsvrEfrllkrLreagvpvpkpvaaaaq..kvgleyqAdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkarr 170
                  ++  r+vrE+rl+++L  + +  ++  +a+    + + +    ++te l+   dL +++   + l+ +  +    +       mh+ gv H+d+ + n+l+ ++    ++ + D+  ar 
  MMETSP0890-20130614|20608_1 253 VDAKRIVREIRLMHNLDHENILKIYDCYAKFHdaRREAFDDIYIVTELLQ--TDLHDVIYARRPLSRAHVQYFAYQMLCGLGYMHSKGVVHRDIKCGNLLVSDQC---QLKICDFGLARA 367
                  56789**************9988887777665113344455569999997..5998876653445555555555555556799*******************997...888888865554 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2
    PF06293.9  13 eangRrttwfvvaek 27 
                  ea +R+ttw +v +k
  MMETSP0890-20130614|20608_1 465 EASERYTTWNQVVPK 479
                  677899999888777 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.7e-05      0.19     164     196 ..     335     366 ..     237     370 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.7e-05
                  S--EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
   PF01636.18 164 eppvllHgDlhpgNllvdpddgrvgviDfedag 196
                   +++++H+D++ gNllv  d+ ++ + Df++a+
  MMETSP0890-20130614|20608_1 335 HSKGVVHRDIKCGNLLVS-DQCQLKICDFGLAR 366
                  67899*************.88998999**9997 PP

>> PF10483.4  Histone acetylation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.6   3.6e-05     0.069     185     254 ..     127     203 ..     105     204 .. 0.83
   2 ?   -4.0   0.0       3.4   6.7e+03      42      79 ..     445     484 ..     437     493 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
    PF10483.4 185 lngvgivlelenRrksGRalketfvlssatheseslkek.kei.......aeaaeedpesledltTFnLglsekqrra 254
                  + + +++l+  +Rr +G ++k++f+ +s++  s+s ++k +         +e++e++++++++ tT n ++ +k+++a
  MMETSP0890-20130614|20608_1 127 RTSAAAALQRAHRRLRGTSVKKRFFQQSSSSLSTSTETKrQ-EsseikpdDETTEKTETTIKKRTTQNVTTQKKNKKA 203
                  44558899999*****************9999999998851.33555777999999*******************997 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 3.4
    PF10483.4  42 kviflsfetlekpegvdsfidar..sksleelvkevksal 79 
                  +v  l+f t  k +   + i+a+   ++ +++v +++ a+
  MMETSP0890-20130614|20608_1 445 DVEKLGFVTNAKARAYVQSIEASerYTTWNQVVPKLADAS 484
                  6667888888885555555555522455667777776663 PP

>> PF07227.6  Protein of unknown function (DUF1423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.4     0.003       5.8     263     369 ..      97     208 ..      81     213 .. 0.70
   2 ?    3.6   0.2    0.0094        18     101     120 ..     342     361 ..     339     363 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.003
    PF07227.6 263 lqflqel.dssksleeeaekgreiaaqeaerdeiaevvqeavkkkevvaeeklrllkkarvildaldreleekakev.....selkaerqkkkeqidelesivrlkqaeaemf 369
                  + + +e+ +s+  ++e++  +++i + +  r ++a+  q a ++    +  k r+++++ + l + ++  +++  e+     +++k+e++ kk++ +++ +  + k+a a++f
  MMETSP0890-20130614|20608_1  97 VVLWKEIiESACLYDESPPGEKKIDTGKDARTSAAAALQRAHRRLRGTS-VKKRFFQQSSSSLSTSTETKRQESSEIkpddeTTEKTETTIKKRTTQNVTTQKKNKKAFADFF 208
                  5566777677788888889999997777777888888888888876555.677888877776665554444444444111114567777888888899999999999988887 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0094
    PF07227.6 101 rnlaCkslLPvddCeckiCs 120
                  r++ C +lL  d+C+ kiC 
  MMETSP0890-20130614|20608_1 342 RDIKCGNLLVSDQCQLKICD 361
                  89*****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1086  (0.0794324); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.95
# Mc/sec: 1551.33
//
Query:       MMETSP0890-20130614|20629_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1219.96
//
Query:       MMETSP0890-20130614|20663_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   89.0   0.7    2.8e-13   49.2   0.0    3.0  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   7.1e-13   9.8e-09       3      95 ..       6      83 ..       4      84 .. 0.87
   2 !   49.2   0.0   2.1e-17   2.8e-13       4      93 ..      96     179 ..      94     182 .. 0.95

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 7.1e-13
                 HHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-GG CS
   PF00153.22  3 lsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkllskk 95
                 ls++ ++laGa+A ++a+ v +Pldvv+tr q            + d  +  + e  +r++  Gl+p+ll + pa ai+f+t + +++ l k+
  MMETSP0890-20130614|20663_1  6 LSAADTMLAGALARVVAQGVLHPLDVVRTRRQ------------VKDL-RGSVYE--FRAMAYGLSPQLLLSGPAGAIQFTTVDLVRTELAKY 83
                 6778899*************************............3343.444444..9****************************9998876 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 2.1e-17
                  HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  ++l +lla+a+++ +aa+v  P +v+K  ++      ++ y ++++a+++i+ ++G+rg+y Gl p+llr+v+ +++ f++++ l +++s
  MMETSP0890-20130614|20663_1  96 RMLIQLLAAALGASAAATVRVPQEVLKQGIM------AQLYPNTFSATHSIWTTQGWRGFYNGLRPTLLRDVLWNSLSFTIFKLLDEIFS 179
                  57889**************************......999******************************************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|20668_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-09   36.1   0.4    6.9e-09   35.5   0.3    1.4  1  PF13259.1  Protein of unknown function (DUF4050)
      0.003   16.2   0.0     0.0033   16.0   0.0    1.0  1  PF00310.16 Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> PF13259.1  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.3     1e-12   6.9e-09      28     110 ..      19     103 ..       2     104 .] 0.70

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1e-12
    PF13259.1  28 reveeeekwneglrlWeerRdaWtgaksreevvesllsesnkvra....ippasypsiYeklvvq..nktlkepinLsdvvkalvqgWk 110
                  + +  + ++n+gl+ Wee R +W+  ++++e  +s+  + + +r     ip +   +iY+ + ++  +  l++p++L++++++l + W 
  MMETSP0890-20130614|20668_1  19 NAQPVQTFINHGLIRWEEGRAKWLSREKSDE--DSRRGDWRDIRRrmqcIPDD--EAIYDAVFSKpiGWLLPQPVPLAHMIEILEDEWS 103
                  2333377******************999997..44444445555544445443..46777777764467899****************6 PP

>> PF00310.16  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.8e-07    0.0033     202     274 ..       7      78 ..       6      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.8e-07
                  -C--SSSS-SCTTSSSEEEEEEE---TTHHHHHHHHHHHCTT.SS....HHHTC..S..TTSHHHHHHHHHHH CS
   PF00310.16 202 vRfsTntspswenahPfrvlahNGeintikgnknllkareeslkseefgslkklrPiveenesDseildnvle 274
                  +R+s+ +  + +na+P+ +++  G i   +g  ++l +++++   +  g+ +++r  ++  ++D++i d v+ 
  MMETSP0890-20130614|20668_1   7 RRYSNDGTIEDSNAQPVQTFINHGLIRWEEGRAKWLSREKSDE-DSRRGDWRDIRRRMQCIPDDEAIYDAVFS 78 
                  5**********************************98888884.446679****************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 389.41
//
Query:       MMETSP0890-20130614|20681_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-15   56.0   0.1    5.4e-15   55.2   0.0    1.3  1  PF10075.4  COP9 signalosome, subunit CSN8
    1.2e-11   44.4   0.5    1.7e-11   43.8   0.4    1.3  1  PF03399.11 SAC3/GANP/Nin1/mts3/eIF-3 p25 family
  ------ inclusion threshold ------
      0.039   14.1   0.4       0.13   12.4   0.0    1.9  2  PF01399.22 PCI domain


Domain annotation for each model (and alignments):
>> PF10075.4  COP9 signalosome, subunit CSN8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.2e-18   5.4e-15       5     118 ..      65     176 ..      62     179 .. 0.94

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.2e-18
    PF10075.4   5 elytliLlkaLtqndiadfrlllkrlpaaikesdeeiqkllsLeqlLeendyakfwqtlksndlsedltafvagleelvRkeiaelvgkaYesIsadvlaelLglsdeelekfv 118
                  e+++ +L++a++  + +d ++ll + p+a++e ++  + +++ e+lL  +++a+fwq  +  +  e+l   + g+  ++R++i++l+  +Y+s+s+dv+a +Lgls ++l  + 
  MMETSP0890-20130614|20681_1  65 EILAKVLAMAMMARPATDLKALLYMCPEALIEINPLAKRVIQCESLLAAAKFAEFWQ--QAMNAEESLDTLIPGFSASIRRFILDLLALTYQSLSIDVCAPILGLSTDQLRTLT 176
                  78999***************************************************9..555679*****************************************99998765 PP

>> PF03399.11  SAC3/GANP/Nin1/mts3/eIF-3 p25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.4   3.8e-15   1.7e-11      29     204 .]      29     167 ..       8     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 3.8e-15
   PF03399.11  29 eayayvwdqlrsirqDltvQhikdeeavavletiarialesgdleqfnqclaqLkelYadlregepsdneaefvayiLLyalvadpspdfnlelellpae.lrtdpliqhalqleaaleegnyarffklleskdvpylmaclleifenaiRkealkaiskayrssiplkflaelLgf 204
                  + ++yv+ q+ ++ +D+ +       + ++ +           l+qf                  ps+ + e++a +L +a++a p +d+ + l   p+  ++ +pl ++++q e++l+ +++a+f++ +   ++ +    l+  f  +iR+ +l  +  +y+s ++++ +a +Lg+
  MMETSP0890-20130614|20681_1  29 TLESYVESQVTDKNYDFGA-------NKQLIK-----------LYQFF-----------------PSNCQGEILAKVLAMAMMARPATDLKALLYMCPEAlIEINPLAKRVIQCESLLAAAKFAEFWQQA--MNAEESLDTLIPGFSASIRRFILDLLALTYQS-LSIDVCAPILGL 167
                  4566777777777777777.......777777...........77777.................9*************************9999999999***************************99..9999999999999******************9.*******99985 PP

>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.35   1.6e+03      72      77 ..      18      30 ..       8      74 .. 0.57
   2 ?   12.4   0.0   2.9e-05      0.13      20      77 ..     115     172 ..      82     176 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.35
                 S-H.......HHH CS
   PF01399.22 72 lsv.......dev 77
                  s+       +++
  MMETSP0890-20130614|20681_1 18 SSEqfkessiSTL 30
                 4332222222222 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.9e-05
                  XXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHH CS
   PF01399.22  20 eelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdev 77 
                  ++ + +++ + a++ l +l++ +  ++r+  l  +++ y+s+s++  a  l+ls+d++
  MMETSP0890-20130614|20681_1 115 KFAEFWQQAMNAEESLDTLIPGFSASIRRFILDLLALTYQSLSIDVCAPILGLSTDQL 172
                  333334666888999999************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 811.34
//
Query:       MMETSP0890-20130614|20686_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 528.01
//
Query:       MMETSP0890-20130614|20718_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-17   62.1   0.0      9e-17   61.3   0.0    1.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.6e-13   49.5   1.3    2.2e-12   46.5   0.5    2.3  2  PF04212.13 MIT (microtubule interacting and transport) domain
    1.1e-06   27.7   0.0    3.2e-06   26.2   0.0    1.8  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    2.1e-06   26.9   0.2     0.0082   15.2   0.0    2.3  2  PF01078.16 Magnesium chelatase, subunit ChlI
    3.6e-05   23.2   0.0    0.00015   21.2   0.0    1.9  1  PF00158.21 Sigma-54 interaction domain
    0.00015   21.7   0.2       0.64   10.0   0.0    3.1  3  PF13401.1  AAA domain
    0.00023   21.0   0.0    0.00051   19.8   0.0    1.6  1  PF07724.9  AAA domain (Cdc48 subfamily)
    0.00025   20.6   0.1    0.00087   18.9   0.0    2.0  1  PF07728.9  AAA domain (dynein-related subfamily)
     0.0013   19.4   0.0     0.0044   17.6   0.0    2.0  2  PF13207.1  AAA domain
      0.004   16.6   0.0     0.0068   15.8   0.0    1.4  1  PF01443.13 Viral (Superfamily 1) RNA helicase
      0.006   16.1   0.0      0.037   13.6   0.0    2.2  2  PF13245.1  Part of AAA domain
     0.0076   15.4   0.4        1.4    7.9   0.0    2.8  3  PF12846.2  AAA-like domain
     0.0084   15.6   0.1      0.024   14.1   0.1    1.7  1  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.034   13.9   0.0    1.7  1  PF13173.1  AAA domain
      0.015   14.1   0.0      0.032   13.1   0.0    1.5  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.019   14.7   0.3      0.046   13.5   0.2    1.7  1  PF07719.12 Tetratricopeptide repeat
      0.034   14.3   0.4        0.4   10.9   0.0    2.7  3  PF13191.1  AAA ATPase domain
      0.051   13.6   0.0       0.25   11.4   0.0    2.2  2  PF00910.17 RNA helicase
      0.056   12.4   0.0      0.098   11.6   0.0    1.5  1  PF06414.7  Zeta toxin
      0.056   12.8   0.1       0.11   11.8   0.1    1.5  1  PF09624.5  Protein of unknown function (DUF2393)
      0.063   12.7   0.0       0.11   12.0   0.0    1.4  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.071   12.6   0.3       0.16   11.4   0.2    1.5  1  PF00515.23 Tetratricopeptide repeat
      0.072   12.5   0.0       0.23   10.9   0.0    1.6  1  PF13086.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   1.5e-19     9e-17       2     120 ..     133     249 ..     132     263 .. 0.80

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 1.5e-19
                  EEE-------HHHHHHHHHHC.......THEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS...GGGS-HHHH CS
   PF00004.24   2 llyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr...pdkldpall 120
                  l+ GppG+GKT++a+ +ak l       + +++e++ s+l+  ++g+++ k+r+++++a+      +lf+DE ++l ++    e++++++++++L++++++++      ++i a+++   +dk+ +   
  MMETSP0890-20130614|20718_1 133 LMKGPPGCGKTSCARLIAKVLrklkvldQGQLVEVQRSDLVGTHIGHTAVKTRGIIEKAR----GGVLFVDECYRLSNRG---ENDFGTEAIDELMSAMENENI-----VMIFAGYNnedMDKFISSNP 249
                  788*****************86555555588*************************9985....37**********7666...*****************9977.....44545444126666665555 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.5   3.7e-15   2.2e-12      11      66 ..       2      56 ..       1      59 [. 0.90
   2 ?    0.9   0.0      0.65   3.9e+02      29      42 ..     214     227 ..     214     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 3.7e-15
                 HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTHHCHHHHHHHHHHHHHHHHHHH CS
   PF04212.13 11 kAveaDeagkyeeAlelYkeAlelLlqalkyepnperrealrqkieeylkrAeelk 66
                 kA+  D+ag+y+eAl+lY++A+++Ll   k++p++++  ++r ++e y++rAe+lk
  MMETSP0890-20130614|20718_1  2 KAIASDHAGDYSEALKLYTQAIQYLLVYAKSQPESNK-IIIRNRLEGYMSRAETLK 56
                 8***************************998854444.55***************9 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.65
                  HHHHHHHHHHHHHC CS
   PF04212.13  29 keAlelLlqalkye 42 
                  +eA+++L+ a+ +e
  MMETSP0890-20130614|20718_1 214 TEAIDELMSAMENE 227
                  69********9998 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   5.4e-09   3.2e-06      44     119 ..     123     210 ..      71     242 .. 0.64

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5.4e-09
    PF05496.7  44 kkreealdhvllyGpPGlGkttlakiiakelgvelkvtsgPvle.kagdlaal...........ltnleekdvlfideihrlsravee 119
                  k ++ a  h l+ GpPG Gkt+ a++iak l        g ++e + +dl++            + + +++ vlf+de +rls+  e+
  MMETSP0890-20130614|20718_1 123 KFKTAAFPHSLMKGPPGCGKTSCARLIAKVLRKLKVLDQGQLVEvQRSDLVGThightavktrgIIEKARGGVLFVDECYRLSNRGEN 210
                  44667889*********************99877777788888734568876422211111111223456789*********986553 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.4e-05    0.0082      24      52 ..     131     159 ..     123     176 .. 0.77
   2 !    9.6   0.0   0.00068      0.41      91     136 ..     177     230 ..     167     239 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.4e-05
   PF01078.16  24 nlllvGppGsGKtmlakrlpsllpplsee 52 
                  + l+ GppG+GKt  a+ ++++l +l+  
  MMETSP0890-20130614|20718_1 131 HSLMKGPPGCGKTSCARLIAKVLRKLKVL 159
                  4589******************9987654 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00068
   PF01078.16  91 vGggskpkpGeislahnGvLfLDEl........pefkrkvleaLRePledgevt 136
                  +G  +  + G i +a+ GvLf+DE+         +f +++++ L + +e+++++
  MMETSP0890-20130614|20718_1 177 IGHTAVKTRGIIEKARGGVLFVDECyrlsnrgeNDFGTEAIDELMSAMENENIV 230
                  566667889***************933332222356667777777777777765 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.5e-07   0.00015      24     108 ..     131     207 ..     115     212 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-07
                  -EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH------------S-----TTTG----EEEET-----HH CS
   PF00158.21  24 tvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekkGlfekadgGtLfLDeigelple 108
                  + l++G  G+GK+ +Ar+i +  +    ++  ++ +++  e+ +s+L G++ G  t A  + +G +eka gG+Lf+De  +l+ +
  MMETSP0890-20130614|20718_1 131 HSLMKGPPGCGKTSCARLIAKVLR----KLKVLDQGQLV-EVQRSDLVGTHIGH-T-A-VKTRGIIEKARGGVLFVDECYRLSNR 207
                  5799***************98766....34568888875.578999*9999884.3.3.3456****************999876 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0028       1.7      10      26 ..     135     151 ..     130     159 .. 0.84
   2 !   10.0   0.0    0.0011      0.64      57     124 ..     151     236 ..     147     240 .. 0.76
   3 ?   -0.4   0.0       1.8   1.1e+03      50      86 ..     291     326 ..     262     363 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0028
    PF13401.1  10 tGesGvGKTtllrrlar 26 
                   G++G+GKT ++r +a+
  MMETSP0890-20130614|20718_1 135 KGPPGCGKTSCARLIAK 151
                  6***********99887 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0011
    PF13401.1  57 kllsalglpakg...rltteell.ealqealrrrrt.......rlliiDEaqrLs........eealeelrsllddetgvklvlvGt 124
                  k+l++l++   g   + ++++l+ +++ +++ ++r        ++l +DE  rLs        +ea++el s ++   ++ ++++G 
  MMETSP0890-20130614|20718_1 151 KVLRKLKVLDQGqlvEVQRSDLVgTHIGHTAVKTRGiiekargGVLFVDECYRLSnrgendfgTEAIDELMSAME-NENIVMIFAGY 236
                  6666666666666666666777767777777766667888888***********4456677889******99999.9*******995 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.8
    PF13401.1  50 spkellqkllsalglpakgrltteellealqealrrr 86 
                  +p++l ++ll+   ++ ++ + +  l ++l++ ++r+
  MMETSP0890-20130614|20718_1 291 NPSALTKMLLQYTTREQRE-RMNGGLCDHLLRNAKRH 326
                  4444555555554444444.33333333333333333 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.6e-07   0.00051       7      82 ..     133     206 ..     130     230 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.6e-07
                  EEE-------HHHHHHHHHHTT-....--EEEEGGG---...----THHHHHHHHHTTT-HHHHT---EEEETGGG--- CS
    PF07724.9   7 lllgptgvGktelakalaellfvkkekkliradaselle...eeevehlvsrligappgyvgaeegGivllDEidKihp 82 
                  l+ gp g+Gkt  a+ +a++l+     kl ++d  +l e   ++ v + + +  ++  g+++++ gG++++DE  + ++
  MMETSP0890-20130614|20718_1 133 LMKGPPGCGKTSCARLIAKVLR-----KLKVLDQGQLVEvqrSDLVGTHIGHTAVKTRGIIEKARGGVLFVDECYRLSN 206
                  789******************8.....8999999998887778889999************************877776 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-06   0.00087       2      77 ..     132     204 ..     131     245 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-06
                  EEEE------HHHHHHHGGGGBS--EEEEE--.TT--HHHH---B--.........--------G-SEEEEESGGG- CS
    PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqlt.rdtteedlkgrreiangttslvdsplvraaregeilvlDEvera 77 
                   l++GppG+gK++ a+++a++l++  +  q++    +++dl+g      g+t+ +   + ++ar g +l++DE  r+
  MMETSP0890-20130614|20718_1 132 SLMKGPPGCGKTSCARLIAKVLRKLKVLDQGQlVEVQRSDLVGTHI---GHTAVKTRGIIEKAR-GGVLFVDECYRL 204
                  699*******************555554444424688888888777...666666666664554.667777776555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       7.7   4.6e+03      84     101 ..      73      91 ..      25     110 .. 0.61
   2 !   17.6   0.0   7.4e-06    0.0044       6      40 ..     136     188 ..     133     275 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 7.7
                  --.------EEEEE----T CS
    PF13207.1  84 dl.rleeadeiiyldaplp 101
                  ++ + +++de+++l ++l+
  MMETSP0890-20130614|20718_1  73 SIvQDDDDDEDFDLRTELT 91 
                  3334456666666666665 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 7.4e-06
                  --TT---HHHHHHHHHHS.TEEEEEGGGB-.................-GGGS- CS
    PF13207.1   6 GppGsGKsTlakeLaerl.glpvlslddll.................reeglk 40 
                  GppG+GK++ a+++a+ l  l+vl+ ++l+                 +++g++
  MMETSP0890-20130614|20718_1 136 GPPGCGKTSCARLIAKVLrKLKVLDQGQLVevqrsdlvgthightavKTRGII 188
                  9***************9988999999994345555555555555555444444 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05    0.0068       2      71 ..     133     205 ..     132     220 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.2e-05
   PF01443.13   2 vvhGvpGcGKStlirkllrt...ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkililDEylllh 71 
                  +++G pGcGK+++ r +++    l+v  +   +   +++ ++++ + t  +      k +g +l++DE+++l 
  MMETSP0890-20130614|20718_1 133 LMKGPPGCGKTSCARLIAKVlrkLKVLDQGQLVEVQRSDLVGTHIGHTAVKTRGIIEKARGGVLFVDECYRLS 205
                  57899******9766666553333333332222233337788888888888888888889*********9985 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.1e-05     0.037      10      37 ..     131     155 ..     124     171 .. 0.76
   2 ?   -1.1   0.0       2.4   1.4e+03      32      55 ..     369     390 ..     363     391 .] 0.68

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.1e-05
    PF13245.1  10 npllvvtGgPGtGKTttlaaiiaallaa 37 
                  ++l    G+PG GKT   a++ia +l++
  MMETSP0890-20130614|20718_1 131 HSL--MKGPPGCGKT-SCARLIAKVLRK 155
                  444..36********.********9975 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.4
    PF13245.1  32 aallaarekp.grsvllvaptgraa 55 
                  a+++   ++  g ++++ + t+r++
  MMETSP0890-20130614|20718_1 369 AQHA---SDSgGGGIVVSSATRRFL 390
                  4444...344477899999999985 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.025        15       2      25 ..     130     153 ..     129     166 .. 0.80
   2 !    7.9   0.0    0.0024       1.4     242     310 ..     191     262 ..     175     280 .. 0.82
   3 ?   -1.8   0.0       2.1   1.3e+03      94     145 ..     298     342 ..     267     360 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.025
    PF12846.2   2 pntlilGppGsGKSvllkklvlql 25 
                  p+ l+ GppG+GK++ ++ ++  l
  MMETSP0890-20130614|20718_1 130 PHSLMKGPPGCGKTSCARLIAKVL 153
                  677888***********9995443 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0024
    PF12846.2 242 dlrdkllviDEahrllgs...pegadfldelaregRkfgvgiilatQslsdlpps.ekakgilnnsttkiilr 310
                   +   +l++DE+ rl +    ++g +++del+  +   ++ +i+a  + +d+++  +   g++ ++t  +i+ 
  MMETSP0890-20130614|20718_1 191 ARG-GVLFVDECYRLSNRgenDFGTEAIDELMSAMENENIVMIFAGYNNEDMDKFiSSNPGLFRRITHHFIFE 262
                  444.89**********77776899*********************9999999998877888888888888776 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.1
    PF12846.2  94 alle.tdselrnrpledeeeaalsralrelyeeegiatlaqrqayPt.lgdlle 145
                  +ll+ t+ e+r+r  ++  + +l++a r+l ++  i+           ++dll 
  MMETSP0890-20130614|20718_1 298 MLLQyTTREQRERMNGGLCDHLLRNAKRHLDQRLTID---------AsVDDLLT 342
                  2333444444444444444444455555554444444.........33333333 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   4.1e-05     0.024      15      33 ..       8      26 ..       3      60 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.1e-05
    PF13414.1 15 kegdydeAieayekAleld 33
                 ++gdy eA+++y++A+++ 
  MMETSP0890-20130614|20718_1  8 HAGDYSEALKLYTQAIQYL 26
                 589**************84 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.8e-05     0.034       6     109 ..     133     248 ..     129     261 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.8e-05
    PF13173.1   6 vitGpRrvGKttllkqlakell.....keesilyinlddeelrkladpe.llelfleklkekkkylflDEiqev.........pewedalkslvddgrnldviltGsnskllskeiats 109
                  +++Gp ++GKt  ++ +ak l      ++ + ++++  d     +  ++   + ++ek+  +  +lf DE  ++          e+ d l s ++++ n+ +i+ G n+ ++ k i+++
  MMETSP0890-20130614|20718_1 133 LMKGPPGCGKTSCARLIAKVLRklkvlDQGQLVEVQRSDLVGTHIGHTAvKTRGIIEKA--RGGVLFVDECYRLsnrgendfgTEAIDELMSAMENE-NIVMIFAGYNNEDMDKFISSN 248
                  679**********9777765556666666666666655533333332223346666654..5579*********9*999988888888888888877.99*********9998866654 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.3e-05     0.032       5     126 ..     133     235 ..     131     239 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.3e-05
    PF09848.4   5 lvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrlltkkdqkekksgenqlkellkrakvvvalvD 126
                  l +G +G GKt +a  +++ l       ++  ++  ++lv+v r++l ++     +++++ k + +i++++          v++vDE  rl +++++++  +  ++l + ++++++v+++ +
  MMETSP0890-20130614|20718_1 133 LMKGPPGCGKTSCARLIAKVL-------RKLKVLDQGQLVEVQRSDLVGTH----IGHTAVKTRGIIEKAR--------GGVLFVDECYRLSNRGENDFGTEAIDELMSAMENENIVMIFAG 235
                  56899*******999998888.......7788899999*********7777....99999****9999999........99************99999998888888888888887777765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   7.8e-05     0.046       8      30 ..       3      25 ..       1      26 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.8e-05
                 HHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  8 GlayyklgdyeeAleafekAlel 30
                 + a  ++gdy eAl+++ +A+++
  MMETSP0890-20130614|20718_1  3 AIASDHAGDYSEALKLYTQAIQY 25
                 5666789*************985 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.2   4.3e+03     121     147 ..      63      86 ..      13      94 .. 0.59
   2 ?   10.9   0.0   0.00068       0.4      30      58 ..     136     164 ..     124     229 .. 0.76
   3 ?   -0.1   0.0       1.6   9.5e+02      75     123 ..     316     350 ..     277     370 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 7.2
    PF13191.1 121 ldaalartrrpklvlvlDDlqwadres 147
                  l ++ ++++   + +v DD ++ d++ 
  MMETSP0890-20130614|20718_1  63 LKPQTTNQQ---VSIVQDDDDDEDFDL 86 
                  222223333...788888777777665 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00068
    PF13191.1  30 GpsGiGKSsLlrelakpillerlrfaagk 58 
                  Gp+G+GK+s +r +ak +++ ++++++  
  MMETSP0890-20130614|20718_1 136 GPPGCGKTSCARLIAKVLRKLKVLDQGQL 164
                  *************9998777776655433 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.6
    PF13191.1  75 lrellrqlltelaaelggwreallaalgalipelegiiglqalvallda 123
                  +++llr+  ++l+++l  ++++   ++ +              +++l +
  MMETSP0890-20130614|20718_1 316 CDHLLRNAKRHLDQRLTIDASVDDLLTYT--------------EDDLIR 350
                  77888888888888877777777666666..............444444 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00042      0.25       3      28 ..     134     158 ..     132     176 .. 0.75
   2 ?   -2.5   0.0       8.7   5.1e+03      70      88 ..     345     363 ..     335     373 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00042
   PF00910.17   3 lyGpsgeGKStlakeLakallkklkl 28 
                  + Gp+g+GK+++a+ +ak +l+klk 
  MMETSP0890-20130614|20718_1 134 MKGPPGCGKTSCARLIAK-VLRKLKV 158
                  78*********9998555.5555544 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 8.7
   PF00910.17  70 laelirlvsstpyplnmas 88 
                  + +lir++   p p++m  
  MMETSP0890-20130614|20718_1 345 EDDLIRAMRDLPTPPPMIV 363
                  5688999999999999875 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016     0.098      20      48 ..     133     167 ..     116     240 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00016
    PF06414.7  20 llgGqpGAGKtslaellleela......agnivri 48 
                  l+ G+pG+GKts a+l+ + l+      +g+ v++
  MMETSP0890-20130614|20718_1 133 LMKGPPGCGKTSCARLIAKVLRklkvldQGQLVEV 167
                  799************99988765556656666655 PP

>> PF09624.5  Protein of unknown function (DUF2393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00019      0.11      87     147 ..      27      91 ..      22      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00019
    PF09624.5  87 linkkqksgnlikeilkkqkpfvkk....tesiadnlkpgeskefrviisnppydgdlnlrvkae 147
                  l+++k + ++ ++ i+++++++ ++    +   ++ lkp+++++   i+++  +d+d++lr+++ 
  MMETSP0890-20130614|20718_1  27 LVYAKSQPESNKIIIRNRLEGYMSRaetlKVAMQQGLKPQTTNQQVSIVQDDDDDEDFDLRTELT 91 
                  556666777778888899999777778888888899**************************985 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.11       1      53 [.     131     184 ..     131     237 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00018
    PF07726.6   1 hvllegvPGlaktllvkalakald.lefkriqftpdllPsdilGtevyeekeke 53 
                  h l++g PG +kt  ++ +ak+l  l++       ++  sd++Gt++ +++ k+
  MMETSP0890-20130614|20718_1 131 HSLMKGPPGCGKTSCARLIAKVLRkLKVLDQGQLVEVQRSDLVGTHIGHTAVKT 184
                  889******************996234433334467889999999987665533 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00027      0.16      13      29 ..       8      24 ..       2      25 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00027
                 HTT-HHHHHHHHHHHHH CS
   PF00515.23 13 klgkydeAleyyekALe 29
                 + g+y eAl+ y +A++
  MMETSP0890-20130614|20718_1  8 HAGDYSEALKLYTQAIQ 24
                 67*************97 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00039      0.23      19      41 ..     131     156 ..     111     185 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00039
    PF13086.1  19 itliqGpPgtGKt...ttivelisql 41 
                   +l++GpPg+GKt   + i++++++l
  MMETSP0890-20130614|20718_1 131 HSLMKGPPGCGKTscaRLIAKVLRKL 156
                  59***********6665666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.65u 0.59s 00:00:01.24 Elapsed: 00:00:00.83
# Mc/sec: 1128.89
//
Query:       MMETSP0890-20130614|20720_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-10   42.1   0.5    6.3e-08   32.9   0.3    2.3  1  PF03067.10 Chitin binding domain
  ------ inclusion threshold ------
        1.4    8.5  13.2       0.85    9.3   1.3    2.4  2  PF05887.6  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF03067.10  Chitin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.3   9.2e-12   6.3e-08       1     183 []      21     267 ..      21     267 .. 0.69

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 9.2e-12
   PF03067.10   1 HGyvssPasRqylcaldgkf.neacra...........aecgaaqyepqsvnegaag.....fvkaavadgklcsagda.gdksgldeaksdrWrkt..qikagasiefkwkitapHetsyfevyiTkpgwdpsqpeltwsdlelt.pfeq.vdgnga.....................................................kplvaakqsyeitvtlPed.rsgkhvllvvWqradtagEaFynCaDvn 183
                  HGy+ +P+sRq+l+++++ + ++ c             +   a  +  +  +  +       f  ++v + ++c+ + +  + +++ ++  ++W  +  +++ag+ ++++w ++a H  + +++ +++   dps  ++ w+d +   ++++ +    +                                                      +     +  + +v +P +  +g  vl ++W+ ++t++  F  CaD++
  MMETSP0890-20130614|20720_1  21 HGYLFDPPSRQRLAKEANVDyCPHCVLssphgseaagaS---ARPWPGNRAFADPGTaqsqsFFYNGVSPFGVCGTQFQgSADYNFPDQVNTNWGYDftNVQAGEILDVSWSVNADH-GGVYQFRLCD---DPSLVSFLWADEAPNvTIQNeL----EecyqagilrcddvptndcsfevdckdgwgcsteglyfhcgdssstyacafhsdGTRAYGGVLVQRKVLIPRNfPTGPTVLTWRWDSHETTE-VFAACADIT 267
                  **************9966654144444444433222220...2222222222222222233222223336667766443334444445666778776447799988***********.999******7...7787778888887664544433....2345588999999999*********************************998752222344444559999999999***************9.*******96 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.7    0.0051        35      74     103 ..     277     300 ..     257     310 .. 0.44
   2 ?    9.3   1.3   0.00012      0.85      76     119 ..     339     382 ..     326     397 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0051
    PF05887.6  74 eegeeetepeeegeeetepeeeeepepepe 103
                  +       p++ +  e+ p+++e+ e + +
  MMETSP0890-20130614|20720_1 277 K------SPNPAPTTEPTPQDDEDNEDNED 300
                  1......12222222222222222222222 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00012
    PF05887.6  76 geeetepeeegeeetepeeeeepepepetepepepepepepepe 119
                   e+ ++   +g+ +  p +   p p+p + p pep   p pe +
  MMETSP0890-20130614|20720_1 339 CEHCSGTWCQGNTQVTPRPTSAPYPKPTSAPVPEPTVSPTPEKD 382
                  55555555667777888888888888888888888777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.82
# Mc/sec: 1168.95
//
Query:       MMETSP0890-20130614|20748_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.6   1.3       0.17   11.7   0.7    1.7  1  PF06667.7  Phage shock protein B
       0.11   10.6   2.0       0.12   10.5   1.4    1.1  1  PF01499.11 Herpesvirus UL25 family
       0.17   11.5   1.5       0.26   10.9   1.1    1.3  1  PF07889.7  Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> PF06667.7  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   3.7e-05      0.17      36      70 ..      80     115 ..      70     120 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.7e-05
    PF06667.7  36 lsee.dekeLeeLlekaekleeRietlErildaesp 70 
                  l+++ d  + +++ ++   l+ R++t+E++l+ae+ 
  MMETSP0890-20130614|20748_1  80 LKQHvDAVKTDDMKRETTALARRLDTVEALLEAEKE 115
                  554448889999*********************985 PP

>> PF01499.11  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   2.6e-05      0.12      14     105 ..      39     132 ..      29     190 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.6e-05
   PF01499.11  14 herNflriaeesleetrerfalrlrkeaeevkleklkkr.alkaeLdnleaksqt.rseeiearLreieaeleevadaldlletaaaaaeeada 105
                  h+ + ++++++ ++  ++++++ + +   + ++e+l     lk+ +d ++ +  + + +++ +rL+++ea le +++a+++le++  a +e+  
  MMETSP0890-20130614|20748_1  39 HTSHHVTPPPKFVRSNNNENQRNAADLLLDDQVEQLTFGqHLKQHVDAVKTDDMKrETTALARRLDTVEALLEAEKEARHELEQQVLALTEKLF 132
                  77788888888888888778877777776666666665559********98765516789*********************9966655555544 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   5.7e-05      0.26      50     103 ..      78     136 ..      66     144 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.7e-05
    PF07889.7  50 kqlekvseava..sakkh...Lsqridnlddkldeqkeiskeikeevteiredlsaike 103
                  ++l++  +av+  + k++   L++r+d+++  l+++ke  +e +++v  + e+l  i++
  MMETSP0890-20130614|20748_1  78 QHLKQHVDAVKtdDMKREttaLARRLDTVEALLEAEKEARHELEQQVLALTEKLFIIEQ 136
                  55555555553223455433399***************************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       974  (0.0712405); expected 273.4 (0.02)
Passed bias filter:                      530  (0.0387654); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 886.20
//
Query:       MMETSP0890-20130614|20754_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-107  357.3   0.2   2.8e-107  357.1   0.1    1.0  1  PF03332.8 Eukaryotic phosphomannomutase
    3.6e-06   26.6   0.1    2.3e-05   23.9   0.1    1.9  1  PF08282.7 haloacid dehalogenase-like hydrolase
     0.0024   17.1   0.0        1.8    7.6   0.0    2.0  2  PF05116.8 Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> PF03332.8  Eukaryotic phosphomannomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.1   0.1  6.1e-111  2.8e-107       1     220 [.      25     243 ..      25     244 .] 0.99

  Alignments for each domain:
  == domain 1    score: 357.1 bits;  conditional E-value: 6.1e-111
                  HHHHHHHHHTTSB---B----HHHHHHH--.--HHHH-SEE-S-----EEE---EEE---HHHH---HHHHHHHHHHHHHHTT---S------SEE----EE---------HHHHHHHHHHHHHH-HHHHHHHHHHHHT-----EEE-------EEE-----GGGGGGGTTT----EEEEE-----------HHHHSTTEE----SSHHHHHHHH.HHH- CS
    PF03332.8   1 lkeflkklrkkveigvvgGsdlekikeqlageevldefdyvfsenGlvaykkgkelasqsiqkalgeeklkklinfvlryladldlPvkrGtfiefrngllnvsPiGrncsqeernefeeydkkhkireklveelkeefadlgltfsiGGqisfdvfPkgWdktyclqhvekdsfdeihffGdktaeGGndyeifadprtighsvtspedtvkkleellk 220
                  +kef+++lr++++igvvgGsd+ k+keql ge+v++e+dy+fsenGl+ayk g+ + +qs+ +++ge+ lk+lin++l yla++d+P+krGtfiefr+g+ln+sPiGrncs+ ern feeydk hkir+++v+++++efadl+ltfsiGGqisfdvfP+gWdkt+cl+++ +  f++ihffGdkt++GGnd+eif++prtigh+v+spedt++++e l++
  MMETSP0890-20130614|20754_1  25 MKEFMASLRENISIGVVGGSDFPKQKEQL-GENVINEYDYAFSENGLTAYKAGELIGQQSMAEKVGEDALKRLINWTLMYLAQIDIPIKRGTFIEFRKGMLNISPIGRNCSRAERNAFEEYDKIHKIRATMVQAMQKEFADLHLTFSIGGQISFDVFPDGWDKTFCLNFLPESDFEQIHFFGDKTYQGGNDFEIFESPRTIGHTVSSPEDTRAQCEALFM 243
                  799**************************.7*****************************************************************************************************************************************************************************************9996 PP

>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   5.1e-09   2.3e-05       3     219 ..       8     219 ..       6     228 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 5.1e-09
                  E------S-TTS---HHHHHHHHHHHHTT-EEEEEESS-HHHHHCCHCHTTCC..SEEE-E---EE.CCTTEEEEE----CCHHHHHHHHHHHCTSEEEEE---EEEEC-TT-HHHHHHHCCCTSCEEEES-HCCHS-S--SEEEEE--.GGGHHHHHHHHHCCTTTTC.EEEEEETTEEEEEE----HHHHHHHHHHHTT--GGGEEEE--....--TTHHHHH CS
    PF08282.7   3 sDlDGTLlnsdkkiseetkeaikklqekgikvviaTGRslsevlplleelgld..lpvialNGaliddekgeilsknelskeavkeiikllkennleillytedkvyvinkksekkakeeeknkkkkeekkeeeelededinkililed.kedldelekelkeelnkli.titsssegsleiipkgvsKgtalkklakalnisleeviafGD....geNDieMLe 219
                  +D+DGTL    + i++e ke ++ l+ ++i + ++ G ++ + ++ l e  ++   +  + NG    ++ ge++ ++++ ++  ++ +k l +   ++++  + ++ +++       ++ e+ k + +++    +  + + n +  +++ ++   ++ +++++e+++l  t++  ++ s+++ p g++K   l++l    + + e++  fGD    g ND e +e
  MMETSP0890-20130614|20754_1   8 FDIDGTLTIARGIITNEMKEFMASLR-ENISIGVVGGSDFPKQKEQLGENVINeyDYAFSENGLTA-YKAGELIGQQSMAEKVGEDALKRLIN--WTLMYLAQIDIPIKRG------TFIEFRKGMLNISPIGRNCSRAERNAFEEYDKiHKIRATMVQAMQKEFADLHlTFSIGGQISFDVFPDGWDKTFCLNFLP---ESDFEQIHFFGDktyqGGNDFEIFE 219
                  9*************************.89*********999988888877777789**********.*************8888888888877..4455555555555555......3333333333333333333333334444333303333444677777776665699999999*************999998...6799999999994444468888887 PP

>> PF05116.8  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00041       1.9       4      92 ..       5      92 ..       2     109 .. 0.84
   2 !    7.6   0.0    0.0004       1.8     128     206 ..     146     228 ..     141     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00041
                 EEEE-TBTTTB.--HHHHHHHHHH--.-----EEEEEE----HHHHHHHHHH------SEEEE----EEE-..-----HHHHHHHHTT- CS
    PF05116.8  4 llvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyygeelvpdkaweeildekw 92
                 l + d+D+tl       +++++e++  + r+++ ++++ G  + ++ke l e  + + d+   + G + y++ el+ +++ +e + e+ 
  MMETSP0890-20130614|20754_1  5 LALFDIDGTLTIARGIITNEMKEFMA-SLRENISIGVVGGSDFPKQKEQLGENVINEYDYAFSENGLTAYKAGELIGQQSMAEKVGEDA 92
                 5578*******888889999999999.999************************************99999888888888877776655 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0004
                  S-THHHHHHHHHHHT----EEEEEE---..EEEEEETT-----HHHHHHHHHT--GGGEEEE---....------T.TSS-B--B- CS
    PF05116.8 128 kaaevlkeleqlLekreldvkviyssgk..dlDilPkraskgeAlryLakklelelenilvcGds....gnDeell.ignvrgVvV 206
                  k +++ + + q+++k+  d+++ +s g    +D+ P + +k   l++L +   ++ e+i + Gd     gnD e++  + + g  V
  MMETSP0890-20130614|20754_1 146 KIHKIRATMVQAMQKEFADLHLTFSIGGqiSFDVFPDGWDKTFCLNFLPE---SDFEQIHFFGDKtyqgGNDFEIFeSPRTIGHTV 228
                  55666777888888888888888887651168****************85...678888888885444479999886666766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.90
# Mc/sec: 649.68
//
Query:       MMETSP0890-20130614|20775_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42   10.2   3.7         11    5.6   0.1    2.2  2  PF12474.3 Polo kinase kinase


Domain annotation for each model (and alignments):
>> PF12474.3  Polo kinase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.3   0.00087        12      22      57 ..      13      48 ..       2      53 .. 0.85
   2 ?    5.6   0.1    0.0008        11      49      87 ..      77     119 ..      73     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00087
    PF12474.3 22 kryekEleqlerqqkreiekleqrqeqerrelpKri 57
                 ++ e +++  +++qk ++ kle++q++ + ++++ i
  MMETSP0890-20130614|20775_1 13 NDDEHDVDPPNKHQKLQEIKLEAQQAIAQLNASRAI 48
                 5567899999*****************999999876 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0008
    PF12474.3  49 errelpKriRaEqe...krlkkFkeslkiekk.elkeeveklk 87 
                  +r+++ K iR+ +e   +rl++F+++lk  k+ +++ +v  ++
  MMETSP0890-20130614|20775_1  77 RRKRTNKDIRNREEdtlSRLAAFQNTLKSFKQgQPATNVSTIR 119
                  799999999974442236999*******999888887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       809  (0.059172); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.91
# Mc/sec: 534.57
//
Query:       MMETSP0890-20130614|20820_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-05   22.0   0.3     0.0001   21.6   0.2    1.2  1  PF14023.1 Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   7.4e-09    0.0001     113     203 ..       7     105 ..       3     112 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.4e-09
    PF14023.1 113 llseiaeltelRanRisleafslppthwivllllsalsligflle......llvilnknqlphliaillfa.lvavyvlfllf..dLnkPFsGvyqikrs 203
                  +++ ++el+ +R  R+ +++  lp  h+++l++l+ ++l +f l          +l ++ +++ +  +lf+ ++a+  l l +   + +P  + y +++ 
  MMETSP0890-20130614|20820_1   7 VYETVKELRIQRGARLGALQRKLPAVHFALLAVLAGFVLAVFPLLaaatgaAQKALADE-TLIDVQAILFSfMTAGLALTLRLlfAFWTPTGSAYNVDAV 105
                  6899*********************************9999944336666333333344.4444444555536666555443333888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.62
# Mc/sec: 687.99
//
Query:       MMETSP0890-20130614|20818_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-16   59.1   0.3    2.2e-07   30.2   0.0    3.6  3  PF00023.25 Ankyrin repeat
    3.1e-16   59.3   0.0      4e-10   39.7   0.0    3.0  2  PF12796.2  Ankyrin repeats (3 copies)
    2.8e-15   55.8   0.2    2.1e-05   24.4   0.0    3.4  3  PF13857.1  Ankyrin repeats (many copies)
    3.2e-13   48.3   0.1    0.00011   22.0   0.0    3.7  3  PF13606.1  Ankyrin repeat
    8.5e-11   41.9   0.3    0.00015   22.0   0.0    3.9  4  PF13637.1  Ankyrin repeats (many copies)
     0.0013   18.1   0.0     0.0039   16.6   0.0    1.6  2  PF06128.6  Shigella flexneri OspC protein
  ------ inclusion threshold ------
       0.12   11.7   0.0       0.31   10.4   0.0    1.7  1  PF08421.6  Putative zinc binding domain


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        21       2      24 ..     149     174 ..     148     183 .. 0.70
   2 !   20.1   0.0   1.7e-07   0.00033       2      30 ..     185     215 ..     184     216 .. 0.95
   3 !   30.2   0.0   1.1e-10   2.2e-07       2      30 ..     224     252 ..     223     255 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.011
                  SCBHHHHHHHTTHHHHHHHHHH...T CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLls...q 24 
                  G+T L++A+++ +   +  Ll+    
  MMETSP0890-20130614|20818_1 149 GMTSLMIAIINKQDVLIGTLLNsykP 174
                  99********9976666666665444 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.7e-07
                  SCBHHHHHHHTT..HHHHHHHHHHTTSSTTH CS
   PF00023.25   2 GfTPLHlAalrg..nlevvklLlsqGAdlna 30 
                  G+T+L +A+ +   ++++v+ Ll++GAd+n+
  MMETSP0890-20130614|20818_1 185 GYTALAYAVGNPggSTSIVRALLKRGADPNL 215
                  9****************************95 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 1.1e-10
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlna 30 
                  G+TPLH A++  +l+ v+ Ll+ GA++ a
  MMETSP0890-20130614|20818_1 224 GWTPLHFACRLADLNTVSVLLDFGANPLA 252
                  9*************************987 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   6.2e-06     0.012      33      83 ..     122     176 ..      97     182 .. 0.80
   2 !   39.7   0.0     2e-13     4e-10      25      85 ..     180     250 ..     176     253 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.2e-06
    PF12796.2  33 AaeagnleivklLleaga.dvnakdkegntpLhlAvrnghlelvklLlek...ga 83 
                  A+e  n+ ++  L++ +   +na+dk g+t L++A+ n++  l+  Ll++     
  MMETSP0890-20130614|20818_1 122 ALEERNFGTALKLINEEHlGINARDKFGMTSLMIAIINKQDVLIGTLLNSykpRL 176
                  667777777777777665489***********************99998744444 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 2e-13
    PF12796.2  25 l....getpLhlAaea..gnleivklLleagadvnakd....kegntpLhlAvrnghlelvklLlekgadv 85 
                       g t+L +A+ +  g++ iv++Ll++gad+n         g+tpLh+A+r  +l +v +Ll+ ga++
  MMETSP0890-20130614|20818_1 180 AqnpqGYTALAYAVGNpgGSTSIVRALLKRGADPNLYIlqpqSGGWTPLHFACRLADLNTVSVLLDFGANP 250
                  44445778******8666****************99889999***************************98 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-08   2.1e-05       4      56 .]     137     192 ..     134     192 .. 0.91
   2 !   22.2   0.0   5.4e-08    0.0001       6      44 ..     175     215 ..     169     216 .. 0.92
   3 !   18.4   0.0   8.2e-07    0.0016      16      56 .]     224     264 ..     218     264 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.1e-08
    PF13857.1   4 hgpadvnatdeggntpLhlAakggalevvrlLl...apgadlnlrdsdgltaldlA 56 
                  + ++ +na+d++g+t L++A+ + +  ++  Ll   +p+ d+n+++ +g tal +A
  MMETSP0890-20130614|20818_1 137 EEHLGINARDKFGMTSLMIAIINKQDVLIGTLLnsyKPRLDINAQNPQGYTALAYA 192
                  446889****************99999999999********************988 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 5.4e-08
    PF13857.1   6 padvnatdeggntpLhlAak..ggalevvrlLlapgadlnl 44 
                   +d+na++++g+t+L +A+   gg++++vr Ll++gad+nl
  MMETSP0890-20130614|20818_1 175 RLDINAQNPQGYTALAYAVGnpGGSTSIVRALLKRGADPNL 215
                  5799***************999*****************97 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 8.2e-07
    PF13857.1  16 gntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  g tpLh+A++  +l+ v  Ll++ga++ +  +  ++ +d+A
  MMETSP0890-20130614|20818_1 224 GWTPLHFACRLADLNTVSVLLDFGANPLALGFAEENVFDVA 264
                  33*****************************9999999988 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.039        76       2      29 ..     149     179 ..     148     180 .. 0.74
   2 !   18.3   0.0   8.3e-07    0.0016       2      29 ..     185     214 ..     184     215 .. 0.94
   3 !   22.0   0.0   5.5e-08   0.00011       2      29 ..     224     251 ..     223     252 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.039
    PF13606.1   2 GnTpLhlAasngrielveaLlen...gadin 29 
                  G T L++A+ n++  l+  Ll++   + din
  MMETSP0890-20130614|20818_1 149 GMTSLMIAIINKQDVLIGTLLNSykpRLDIN 179
                  99*********99888877777544445666 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 8.3e-07
    PF13606.1   2 GnTpLhlAasn..grielveaLlengadin 29 
                  G+T+L +A+ n  g++++v+aLl++gad+n
  MMETSP0890-20130614|20818_1 185 GYTALAYAVGNpgGSTSIVRALLKRGADPN 214
                  99********9988***************9 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 5.5e-08
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  G+TpLh A++   ++ v+ Ll+ ga++ 
  MMETSP0890-20130614|20818_1 224 GWTPLHFACRLADLNTVSVLLDFGANPL 251
                  9************************986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0017       3.4      27      45 ..     142     160 ..     116     168 .. 0.83
   2 !   10.7   0.0   0.00027      0.53      24      54 .]     175     207 ..     164     207 .. 0.82
   3 !   22.0   0.0   7.8e-08   0.00015      12      54 .]     198     244 ..     197     244 .. 0.81
   4 !   15.2   0.0     1e-05      0.02       1      30 [.     224     253 ..     224     259 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0017
    PF13637.1  27 inrtdesGntaLhiAalrg 45 
                  in++d++G+t L iA+ + 
  MMETSP0890-20130614|20818_1 142 INARDKFGMTSLMIAIINK 160
                  89*************9875 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00027
    PF13637.1  24 gidinrtdesGntaLhiAalrg..nieilklLl 54 
                  + din+++ +G taL +A+ +     +i++ Ll
  MMETSP0890-20130614|20818_1 175 RLDINAQNPQGYTALAYAVGNPggSTSIVRALL 207
                  689*****9**********66555999999997 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 7.8e-08
    PF13637.1  12 grlelvklLlekgid....inrtdesGntaLhiAalrgnieilklLl 54 
                  g + +v+ Ll++g+d    i +  + G+t+Lh+A++  +++ +  Ll
  MMETSP0890-20130614|20818_1 198 GSTSIVRALLKRGADpnlyILQPQSGGWTPLHFACRLADLNTVSVLL 244
                  67889**********77554444799*********988888777775 PP

  == domain 4    score: 15.2 bits;  conditional E-value: 1e-05
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt 30 
                  g+t+Lh a++  +l +v  Ll++g+++ ++
  MMETSP0890-20130614|20818_1 224 GWTPLHFACRLADLNTVSVLLDFGANPLAL 253
                  69************************9876 PP

>> PF06128.6  Shigella flexneri OspC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.74   1.5e+03     190     221 ..      15      46 ..      10      57 .. 0.76
   2 !   16.6   0.0     2e-06    0.0039     135     278 ..     105     248 ..      72     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.74
    PF06128.6 190 kkedvalyllsnfeftkqdvasiekelydley 221
                  + ++v  +ll nf ++ ++v +   + y l y
  MMETSP0890-20130614|20818_1  15 HTAEVGDHLLVNFSLEIENVEKQIVQPYSLYY 46 
                  56789999*****9999998776666565555 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2e-06
    PF06128.6 135 eyhiprllstedfkkvk.lreisleeavkasnyeelnkkvtdkkialqalaysidkkkedvalyllsnfeftkqdvasiekelydleyllsehgasvkvleyflnkGlvdvnakf.ekvnsGdtmldnavkyenaemiklllknGa 278
                    h+  l s+ d++ ++ l e  +  a+k  n e+l  +  d k  +++l+ +i +k++ +   ll+ ++   +  a+ ++++  l y++ + g s+ ++  +l++G  d n    +    G t l  a +  + + +++ll +Ga
  MMETSP0890-20130614|20818_1 105 RIHLVYLTSAADYQVINaLEERNFGTALKLINEEHLGINARD-KFGMTSLMIAIINKQDVLIGTLLNSYKPRLDINAQNPQGYTALAYAVGNPGGSTSIVRALLKRGA-DPNLYIlQPQSGGWTPLHFACRLADLNTVSVLLDFGA 248
                  568888999999998753888999999*****9999877666.578999*******9999999999999976555555555666***********************5.6666650555556799******************999 PP

>> PF08421.6  Putative zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00016      0.31       1      27 [.     232     258 ..     232     268 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00016
    PF08421.6   1 CRlCgsteleevldLGaqplsnaFlee 27 
                  CRl + + +   ld+Ga pl+  F ee
  MMETSP0890-20130614|20818_1 232 CRLADLNTVSVLLDFGANPLALGFAEE 258
                  *********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:00.77
# Mc/sec: 1014.56
//
Query:       MMETSP0890-20130614|20816_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.99
# Mc/sec: 307.41
//
Query:       MMETSP0890-20130614|20822_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-14   54.8   0.1    1.3e-14   54.5   0.1    1.0  1  PF08530.5 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.036   14.2   0.0    1.4  1  PF03734.9 L,D-transpeptidase catalytic domain
      0.084   12.3   0.1       0.15   11.5   0.1    1.6  1  PF07039.6 SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> PF08530.5  X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   2.8e-18   1.3e-14      67     215 ..      13     176 ..       2     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 2.8e-18
                  CCCTTGGGTT-TTSBEEEEEE-SS-EEE----EEEEEEEESSSS-.EEEEEEEEE--ES-E...........EEEE---EECCCCC-TTCE.............----TT--EEEEEE-----EEE-TT-EEEEEEES--CTTS-------ECCCEGGGG-EEEEEEE---S-- CS
    PF08530.5  67 vlydpdqreeradvltfttaplaedteivGapkvkLrvssdapda.dlsvkLvdvgpdgra...........klitkGilrlsnrksleea.............epltPgeiydvtleLqptaytfpkGhrlrleisssdfphtdrnpstetltldlakttakntvhtggehps 215
                  v yd+      ++  t +t ++++dte++G  kv+++ +++  d+  +++ + ++++dg+              +++G+   s+r+ + +              ++l+ g i+++++ + p a  f k +++ l ++s+d  h+     +++   d ++ ++k+ +h g +++s
  MMETSP0890-20130614|20822_1  13 VEYDA------DHGYTTFTYTFDQDTELTGYFKVRIHFEASHDDDgCIFAVVDKLDKDGKVvhfygsvgtekDPVSRGYQKISHRELDPTWstesqpvyahtneHKLKKGDIVQLDVAMFPQATFFYKNESVKLTLASYDIAHS----APYHKISDPSHRKGKHIIHLGDKYDS 176
                  44555......8899************************9999777************777777777777789**************99999****************************************************....555566899999*********99988 PP

>> PF03734.9  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.9e-06     0.036      18      73 ..      62     113 ..      55     179 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.9e-06
                  ----EEEEEE-B--....-TTS------EE--........................ CS
    PF03734.9  18 engklvytfpvsvGrgkseggrrTPlGtfrikekvrnptwnvpssiarkeiypklr 73 
                  +++++v +f+ svG    ++++++  G+ +i++ + +ptw+  s++ +  ++ +  
  MMETSP0890-20130614|20822_1  62 DKDGKVVHFYGSVG----TEKDPVSRGYQKISHRELDPTWSTESQPVYAHTNEHKL 113
                  5677788999****....7799******************9987776555444433 PP

>> PF07039.6  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.4e-05      0.15       8      96 ..      42     140 ..      35     175 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.4e-05
    PF07039.6   8 akvkkedeeeewilaevvsvekee...kryevqDvddee.ekktyklsrkkiiplPk...klsketsklaefpkgskV...LAlYPdTtaFYkAtVvat 96 
                  ++++++ +++ +i a v +++k++   + y  + ++++  +++  k+s +++ p  +   +  + ++++++ +kg +V   +A++P+ t FYk + v+ 
  MMETSP0890-20130614|20822_1  42 IHFEASHDDDGCIFAVVDKLDKDGkvvHFYGSVGTEKDPvSRGYQKISHRELDPTWStesQPVYAHTNEHKLKKGDIVqldVAMFPQATFFYKNESVKL 140
                  5556677778888888888888874433455555555544555778888888877774433334567778899999997777**********9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 695.93
//
Query:       MMETSP0890-20130614|20841_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.9   0.1     0.0066   16.2   0.0    2.0  2  PF03129.15 Anticodon binding domain


Domain annotation for each model (and alignments):
>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.17   2.3e+03      37      51 ..      25      39 ..      17      56 .. 0.62
   2 !   16.2   0.0   4.9e-07    0.0066       3      72 ..      86     163 ..      84     190 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.17
                 SSS----HHHHHHH- CS
   PF03129.15 37 rsesigkklrradll 51
                 r+ +  kk+++a+++
  MMETSP0890-20130614|20841_1 25 REAKAEKKVKKAETK 39
                 455555555555543 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.9e-07
                  EEEESSSS.....HHHHHHHHHHHHHHHHC--..--EEE--.SSS----HHHHHHH----EEEEE-HHHHCTTEEEEE CS
   PF03129.15   3 vviplgek.....aeeledyakklaeeLreag..irveldd.rsesigkklrradllgipfavvvGekelekgtvtvr 72 
                  v+ip+        + +++  a++++  L+     ++v +d   ++s+g+k++ ++++g+  ++++G+++++++ + + 
  MMETSP0890-20130614|20841_1  86 VIIPIFWRanqgeECAVTSDAQRIKDLLLSIApdLDVWIDRtYKKSPGQKFAFWETVGVQCRIELGPEDVKNKRCVIA 163
                  56666654444442224466666666666655667788888889**************************87766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       888  (0.0649503); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.83
# Mc/sec: 883.48
//
Query:       MMETSP0890-20130614|20846_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-19   69.9   0.0    2.1e-19   69.3   0.0    1.3  1  PF00782.15 Dual specificity phosphatase, catalytic domain
  ------ inclusion threshold ------
      0.075   12.8   0.9         41    4.1   0.0    3.6  4  PF02861.15 Clp amino terminal domain
      0.084   11.3   0.0       0.11   10.9   0.0    1.2  1  PF11951.3  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   4.6e-23   2.1e-19       1     129 [.      15     138 ..      15     142 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 4.6e-23
                  EEE--CTCHC.HHHHHH----EEEETTSSSSEEECCTT---EEEE-----STT--CGGGHHHHHHHHHHHCC----EEEE-----HHHHHHHHHHHHHHCT-HHHHHHHHHHHHSTT-SS-STTHHHHHH CS
   PF00782.15   1 lylgskstas.lalleklgitlvinvtkevpknnadkkseieylripvedetetkiskeleeavefiekaeqkgkkvlVHCqaGisRSatliiaYlmktknlslneAyefvkerrskispnagflrqLle 129
                  +y+gs  +a+  + l+++g+  ++ ++ + +   +  +s   +l+i ++d+  +++ ++l++a +f+++++     vl HC+ G+sRSa+ ++a+l++++++++++A+ + +++rs++ pn+gf+ qL  
  MMETSP0890-20130614|20846_1  15 IYVGSLAAAEdISGLTEHGVARILTMAARLRV--QLPTSIDAHLQIDIDDHPAANLLEKLPAALTFLDSID----PVLCHCASGVSRSAATVMAWLITRHGFDYDSALTATRQNRSHVDPNIGFKTQLQL 138
                  79999999999999**********99977765..6678999**************************9985....8***************************************************976 PP

>> PF02861.15  Clp amino terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.17   7.6e+02      25      37 ..      60      72 ..      58      78 .. 0.79
   2 ?   -2.3   0.0      0.89     4e+03      33      48 ..     104     119 ..     104     123 .. 0.80
   3 ?    4.1   0.0    0.0089        41      32      46 ..     137     151 ..     136     155 .. 0.92
   4 ?    3.9   0.1      0.01        45      23      48 ..     223     246 ..     221     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.17
                 SCTSHHHHHHHHT CS
   PF02861.15 25 eddgiaariLkka 37
                  dd +aa++L+k+
  MMETSP0890-20130614|20846_1 60 IDDHPAANLLEKL 72
                 46669******98 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.89
                  HHHHTT--HHHHHHHH CS
   PF02861.15  33 iLkkaGvdlealreai 48 
                  +++++G+d + + +a+
  MMETSP0890-20130614|20846_1 104 LITRHGFDYDSALTAT 119
                  5789999999988876 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0089
                  HHHHHTT--HHHHHH CS
   PF02861.15  32 riLkkaGvdlealre 46 
                  ++L+++G++l+++r+
  MMETSP0890-20130614|20846_1 137 QLLADCGGNLDQARA 151
                  89**********997 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.01
                  TTSCTSHHHHHHHHTT--HHHHHHHH CS
   PF02861.15  23 leeddgiaariLkkaGvdlealreai 48 
                   e++  +aa+i+k+a + le+l +++
  MMETSP0890-20130614|20846_1 223 PEDK--VAASIFKAARAKLERLGNEL 246
                  5666..*************9998776 PP

>> PF11951.3  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.5e-05      0.11     172     245 ..     115     199 ..      90     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.5e-05
    PF11951.3 172 llenkkeesdsgldplmGcsnslillisdit.rLarekrearkd............seelpleileqaseleqrlldwkprigdlep 245
                   l+  + ++ s++dp +G+ ++l +l++d+  +L+  + +  k+            ++++ +e +++++++e+rl++ ++r +dl+p
  MMETSP0890-20130614|20846_1 115 ALT-ATRQNRSHVDPNIGFKTQL-QLLADCGgNLDQARARWLKSgyainpqhrairRRNEANEAHQRIDAFEERLQTARSRKDDLTP 199
                  333.367899************6.56688852677777777777***********************************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:01.01
# Mc/sec: 588.41
//
Query:       MMETSP0890-20130614|20855_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.0   0.3    1.1e-14   54.0   0.2    2.7  2  PF08777.6  RNA binding motif
    1.7e-13   49.8   0.3    1.1e-05   24.8   0.0    2.6  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    4.6e-09   36.0   0.1     0.0013   18.6   0.0    2.7  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    9.3e-08   31.6   0.0    2.1e-07   30.5   0.0    1.5  1  PF05383.12 La domain
    1.2e-06   28.1   0.1      0.064   12.9   0.0    3.1  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.035   12.9   1.6      0.054   12.3   1.1    1.3  1  PF06061.6  Baculoviridae ME53
      0.037   13.2   0.2        0.1   11.7   0.1    1.7  1  PF01885.11 RNA 2'-phosphotransferase, Tpt1 / KptA family


Domain annotation for each model (and alignments):
>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.3      0.21   4.1e+02      40     102 ..     123     174 ..      77     187 .. 0.61
   2 !   54.0   0.2   5.5e-18   1.1e-14       9     104 ..     206     299 ..     196     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.21
                  --EEESS-..HHHH---TTTT.----B-TTSSS-EEE-----HHHHHHHHHHHHHHHHH----- CS
    PF08777.6  40 gevrFkedeaakkalekatea.negklkikeaevtlellegeeEkeylkkiledkqkklnnare 102
                  + v++k++++  kal++     +++k+ +               ++y+++i ++k+  + +++e
  MMETSP0890-20130614|20855_1 123 AFVKYKTKDSVPKALAASGTVsKGNKITVYTS------------TDYFERIQKKKESIARKKKE 174
                  55555555554444443333324444444444............44444444444444433333 PP

  == domain 2    score: 54.0 bits;  conditional E-value: 5.5e-18
                  --SS--HHHHHHHT-----EEEE----------EEESS-..HHHH---TTTT----B-TT.SSS-EEE-----HHHHHHHHHHHHHHHHH------- CS
    PF08777.6   9 lnkelsredikelfsklgevkyvdfkegdkegevrFkedeaakkalekateanegklkik.eaevtlellegeeEkeylkkiledkqkklnnarekg 104
                  + ++++r+d+k+lf + +++kyv+fk++d  +++rF+++e ak+al+++t       ++k + +v++  ++g++E +y ++ ++ k ++ ++++++g
  MMETSP0890-20130614|20855_1 206 AAEDIVRDDLKALFTDTASIKYVEFKNTDPVAYIRFESAEHAKAALDAYTTN---PTQLKdNIQVQVAAVQGQAELDYIERANQAKRAATKRKHSGG 299
                  568999*******************************************999...55665156799*****************99999997776665 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.5e-08   4.9e-05       1      69 [.      75     149 ..      75     150 .. 0.83
   2 !   24.8   0.0   5.5e-09   1.1e-05       7      59 ..     207     254 ..     201     263 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.5e-08
                  EEEESSTTTSSHHH....HHHHHCTCTCEEEEEEEES...TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17   1 lfVgnLppdvteee....LkelFskfGpiesiklvrd...etgrskgfafVeFeseedaekAlealngkklggrel 69 
                  ++++++ +++++e+    +k++ +k G +e ++  r+   e++  +g afV++++++++ kAl+   g+  +g+++
  MMETSP0890-20130614|20855_1  75 IYINGFASTTDKEKmeitIKTWSEKHGTVEAVRALRNlnkEDRILDGSAFVKYKTKDSVPKALA-ASGTVSKGNKI 149
                  566666666666642222789999*************987778889******************.99999999988 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 5.5e-09
                  TTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHH CS
   PF00076.17   7 ppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAleal 59 
                   +d+  ++Lk lF +  +i+ ++ +++     +++a+++Fes e a++Al+a+
  MMETSP0890-20130614|20855_1 207 AEDIVRDDLKALFTDTASIKYVEFKNT-----DPVAYIRFESAEHAKAALDAY 254
                  678899********************6.....******************986 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.6e-06     0.019      15      68 ..      93     149 ..      75     150 .. 0.76
   2 !   18.6   0.0   6.5e-07    0.0013       7      60 ..     207     255 ..     201     264 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.6e-06
    PF14259.1  15 lreffspygkvegvriprn..kd.grgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                  ++ + +++g+ve vr  rn  k      g Afv++++++++ kal++ ++v kg +i
  MMETSP0890-20130614|20855_1  93 IKTWSEKHGTVEAVRALRNlnKEdRILDGSAFVKYKTKDSVPKALAASGTVSKGNKI 149
                  67778999*********86215544568*********************99999887 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 6.5e-07
    PF14259.1   7 ppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln 60 
                   +++  +dl+++f +  +++ v+++          A++ fes+e+A++al+++ 
  MMETSP0890-20130614|20855_1 207 AEDIVRDDLKALFTDTASIKYVEFKNT-----DPVAYIRFESAEHAKAALDAYT 255
                  568889******************964.....369***************9963 PP

>> PF05383.12  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.1e-10   2.1e-07      15      60 ..       3      45 ..       2      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.1e-10
                 CC-CCCHHHHHHT----EEHHHHTTSHHHHCC-.S-HHHHHHHHCT CS
   PF05383.12 15 pkDkFLrkqvdkdedgyVpisliasfkrikkltktdvklivealre 60
                 p D++++++ ++  +g+++i+ i+ f ++++lt ++ ++i++al  
  MMETSP0890-20130614|20855_1  3 PFDDYMKSKSNE--EGWIEIEEIMAFPKMRQLT-KEKQKIINALAM 45
                 5699*****999..9******************.789******975 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.3e-05     0.064       6      56 .]      98     154 ..      93     154 .. 0.81
   2 !   11.8   0.0   7.6e-05      0.15      14      49 ..     227     264 ..     215     270 .. 0.74
   3 ?   -2.1   0.0       1.7   3.2e+03      27      43 ..     277     293 ..     273     300 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.3e-05
    PF13893.1   6 skfGkverikifrkk.......ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  +k G+ve ++ +r+         g Afv+++t+++  ka++  +g++ +g+++ v+ s
  MMETSP0890-20130614|20855_1  98 EKHGTVEAVRALRNLnkedrilDGSAFVKYKTKDSVPKALA-ASGTVSKGNKITVYTS 154
                  5677777777776436677666699***************6.89***********976 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 7.6e-05
    PF13893.1  14 ikifrkkggqAfvefdtveaArkakeyl..ngvklygk 49 
                  ++ f++   +A++ f+++e A+ a+ ++  n+++l+++
  MMETSP0890-20130614|20855_1 227 YVEFKNTDPVAYIRFESAEHAKAALDAYttNPTQLKDN 264
                  4445555699****************885566667776 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.7
    PF13893.1  27 efdtveaArkakeylng 43 
                  e d +e A++ak++  +
  MMETSP0890-20130614|20855_1 277 ELDYIERANQAKRAATK 293
                  67777888888877655 PP

>> PF06061.6  Baculoviridae ME53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   2.7e-05     0.054     134     219 ..     157     243 ..     149     282 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.7e-05
    PF06061.6 134 YiFpieleytkkkredkvekk.edlfkvlkdivreKkpneqIekikLrttgrvvlketlenvvverernelkeptvadevsvvpkes 219
                  Y+  i++++++  r++k++++  d   v ++iv++  p+  I +i+L +  +++++++l+ ++ ++ + ++ e + +d+v  +  es
  MMETSP0890-20130614|20855_1 157 YFERIQKKKESIARKKKEKEQaDDDDPVNRKIVQNDIPKGSILSITLANAAEDIVRDDLKALFTDTASIKYVEFKNTDPVAYIRFES 243
                  666677888887787777777666777889************************************999898888888888666555 PP

>> PF01885.11  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.2e-05       0.1      27     139 ..      12     161 ..       7     177 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.2e-05
                  ------B-HHHHH-------TT--HHHH---TTT-----EEE-...................................---EEE-----S-.--....---...----..--SEEEE-EEGGGHHHHHH--.------SSEEEES-....H CS
   PF01885.11  27 ldseGyvkladllaalklkslkvteeeilevVetndkkRFelkl..............................eekgeylIRAtqGhSiklvea.alleklkleeee..lpellvhGTyeealdsilesG.LkkmsRnhvhlstg....e 139
                   ++eG++++++++a +k+++l+ ++++i+++ + +d    +                                 +ek e +I++      + vea   l++l++e+      +++ + T+ +  +++ +sG ++k ++  v  st+     
  MMETSP0890-20130614|20855_1  12 SNEEGWIEIEEIMAFPKMRQLTKEKQKIINALAMSDSVQVSADGnslsrkfpmpdkdpdaertiyingfasttdKEKMEITIKTWSEKHGT-VEAvRALRNLNKEDRIldGSAFVKYKTKDSVPKALAASGtVSKGNKITVYTSTDyferI 161
                  579****************************999998776666577777888888888888888888888876666666666664322222.33334555555554444456667777777777777777777777777777777755552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1041  (0.076141); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.83
# Mc/sec: 895.02
//
Query:       MMETSP0890-20130614|20867_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-33  113.7   0.0    8.8e-33  113.6   0.0    1.0  1  PF01459.17 Eukaryotic porin


Domain annotation for each model (and alignments):
>> PF01459.17  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   6.4e-37   8.8e-33       1     263 [.       5     272 ..       5     292 .. 0.93

  Alignments for each domain:
  == domain 1    score: 113.6 bits;  conditional E-value: 6.4e-37
   PF01459.17   1 nPgtfedlgkeakdllskdyhfeglkldvttktplsvaFqvshskslgss....vtssytleakyvglkltlkgrtdnslslnarvleqlakglklklsaqltpgsgkksaqleleYkgddftaslkvgnsk....tgivvaslvqsvtkklvlGaeavydtaqnkltkeaaalsyaarYtnkdwtaslqllnk....qdqlsasyyhkvs.kkvevgaeltykisegettttiGykyeldksttvkakvdskgkvslllekrLrpgvsltlsaev 263
                  +Pg fe    e+k +++ + +feg+++ v++  pl + F ++h + lgss     +s+y+++a+  +++  +++++d ++s + ++  +++  +  kl++ +++++++     + +Y g+++ta++k+g +     ++  ++s+ qs+t++++lG+e ++  +  +  +    l+ +a+Y +k+++  l ++ +    qdqls+ y + v+  +v++++el+++ s+ge++++ G++ +l++s ++   +d +gk+    e+ L+p  +l++sae+
  MMETSP0890-20130614|20867_1   5 APGQFERREEEVKRITNIN-TFEGVRFGVSK--PLTPMFALNHDVILGSSpipnASSHYKFGATVGDNEGVIMASLDQHGSIEGNIVGTIMGPVQGKLTFYMPNDPKNFVTVADADYNGKNATAQIKIGHNLhgipGPHAGMSYFQSITPRFALGGEGSCALSPPSPPN----LTASAKYHAKTFSSILSYTPPqsgaQDQLSFLYHRIVTpGRVQLASELALQPSTGESQMAAGAEFNLKQS-RINLALDGSGKMTSTVETTLSPSARLSFSAEM 272
                  59*****************.***********..**************99999999**********************************************999997555556****************9667******************************999994....56666666669999999976688889************779*****************************.******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:01.11
# Mc/sec: 645.51
//
Query:       MMETSP0890-20130614|20893_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.6   0.7      0.037   14.0   0.2    1.7  1  PF14389.1  Leucine-zipper of ternary complex factor MIP1
      0.044   13.5   0.8      0.051   13.3   0.5    1.2  1  PF01250.12 Ribosomal protein S6


Domain annotation for each model (and alignments):
>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   5.4e-06     0.037      15      36 ..      48      69 ..      31      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.4e-06
    PF14389.1 15 qeVkkLqkqLqdeekvreaLek 36
                  +++kLq qL++e++ r aLe+
  MMETSP0890-20130614|20893_1 48 IDITKLQYQLNNERSSRYALEQ 69
                 489******************8 PP

>> PF01250.12  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   7.5e-06     0.051      14      62 ..      21      68 ..      13      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.5e-06
                 -HHHHHHHHHHHHHHHHHT--EEEEEEE------SSSBTTB----EEEE CS
   PF01250.12 14 seeevkaliekvkklleenggeivkveewgkrkLaYpIkkkkeGyYvli 62
                 +++  ++lie+ +k +ee++ +i + +++   kL Y+ ++++   Y l 
  MMETSP0890-20130614|20893_1 21 NNQGKDKLIEEKEKRIEEKDKRI-NKKDIDITKLQYQLNNERSSRYALE 68
                 3457899***********98888.56778*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1356  (0.0991808); expected 273.4 (0.02)
Passed bias filter:                      722  (0.0528087); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 428.82
//
Query:       MMETSP0890-20130614|20899_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-20   72.7   0.0    3.7e-20   72.0   0.0    1.3  1  PF00069.20 Protein kinase domain
     0.0001   21.4   0.0    0.00031   19.8   0.0    1.7  2  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   5.4e-24   3.7e-20     134     260 .]      66     228 ..      63     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 5.4e-24
                  T--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST......HHHHHHHHHCCCHHTTS--GGGGCSHHH...................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 134 kgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge......seedqleliekilkkkleedepksssks...................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  k e+ i+D+G a+    +++++t+   tr+Y+APEv+  + ey++++DvWsl+++++elltg+l+f+ +      ++ed+l+ +++ l++  +    + +  +                                   + + d++  +l++ p+kR ta+++l+hpwl
  MMETSP0890-20130614|20899_1  66 KAEIVIVDLGNAC---WRHKHFTDDIQTRQYRAPEVIV-GAEYDTSADVWSLACVIFELLTGDLLFDPRagadydRDEDHLAQMQELLGRYPKDLATQPKA-RtffnrhaelkhihhlnfwdlssvltkkyhhdprdaQAVADFLLPMLQFYPKKRATAADCLRHPWL 228
                  67889*******7...799999999*************.****************************9889988766666666666666544444444444.359999999********************************************************6 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.6e-08   0.00031     169     200 ..      91     122 ..      76     137 .. 0.89
   2 ?   -1.7   0.0      0.17   1.2e+03      39      73 ..     156     190 ..     138     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.6e-08
                  GGGS-HHHHHHSEEEHHHHHHH---HHHHHHT CS
   PF07714.12 169 vkWmapEslkekkftsksDvWsfGvllwEift 200
                   ++ apE++   ++ + +DvWs  ++++E++t
  MMETSP0890-20130614|20899_1  91 RQYRAPEVIVGAEYDTSADVWSLACVIFELLT 122
                  5789**************************98 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.17
                  TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESS CS
   PF07714.12  39 saeeeekeefleeakimkklkhpnivkllgvctke 73 
                   a++ + + f++  + +k+++h n   l  v tk+
  MMETSP0890-20130614|20899_1 156 LATQPKARTFFNRHAELKHIHHLNFWDLSSVLTKK 190
                  56677788999999999999999999999988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.80
# Mc/sec: 1156.24
//
Query:       MMETSP0890-20130614|20923_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.2   0.0    1.8e-15   56.6   0.0    1.3  1  PF01042.16 Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> PF01042.16  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.3e-19   1.8e-15       8     120 ..      67     196 ..      63     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.3e-19
                  TTT-BSEEEETTEEEE----SB-T.....TS-B-.-SSHHHHHHHHHHHHHHHHHHTT--GGG......EEEEEEEESSGGGHHHHHHHHHHHSSSS.....-.S.-EEEEEE-SB-GGG-SEEEEEEEE CS
   PF01042.16   8 aapYsqavkagnlvyvsGqlpldp....etgelv.eedveeqtrqalenlkavLaaagaslsd......vvkvtvFladiedfaevnevyneafdee.....k.saParsavevaaLpkgakvEieaiav 120
                   ++Y    + gnl+y++G+lp+      + g+++   ++e+ + +a +++ +++++  a+l+d      + k+  F++ ++ f ++ +v+n+a+d+      + +++arsav+ +aLp ++ vEieai++
  MMETSP0890-20130614|20923_1  67 KGSYALTSRQGNLLYLAGHLPMPTdgklMVGKVGdTISPEDAAIAAKWCALNIISTLKAELGDldnvvkIHKLVGFVNCVDGFDAQPKVINGASDTMfeifgDaGRHARSAVGTNALPLNVPVEIEAIVE 196
                  5778888899***********976566655666655667888889999999999988888888888666667789**********************88876379***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 722.54
//
Query:       MMETSP0890-20130614|20959_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   64.2   0.0    1.3e-17   63.9   0.0    1.0  1  PF00406.17 Adenylate kinase
     0.0025   17.5   0.1      0.018   14.8   0.1    2.2  2  PF13671.1  AAA domain
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.25   11.1   0.0    1.5  1  PF01712.14 Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> PF00406.17  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   2.9e-21   1.3e-17      74     150 ..       6      96 ..       2      97 .. 0.95

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 2.9e-21
                  H-EEEEE----SHHHHHHHHHHHHCTT-EESEEEEEE--HHHHHHHHHH...............GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00406.17  74 kkgflldgfPRtveqaealeelleeekvkldlvleldvpeevlveRllk...............DneetvkkRletykkqtepvidyykkkg 150
                  k+ fl+dgfPR++++ + +e+ l ++++++ +vl+l+ +e+v+ +R+lk               Dn +++kkR++ty ++t+p+i++y++kg
  MMETSP0890-20130614|20959_1   6 KTDFLIDGFPRNLDNLTGFESNL-SDDCSVPAVLYLETSEQVMQDRILKranqakaageatrsdDNPDAIKKRFKTYIEATMPIIEHYRSKG 96 
                  679******************99.67899************************************************************997 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.9e-06     0.018      96     129 ..      33      65 ..       4      83 .. 0.80
   2 ?    1.3   0.0     0.055   2.5e+02      54      78 ..      80     104 ..      64     117 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.9e-06
    PF13671.1  96 gvpvrivylevpeetlreRlakRerngddrsevp 129
                  +vp +++yle++e+++++R+ kR+++ +++ e++
  MMETSP0890-20130614|20959_1  33 SVP-AVLYLETSEQVMQDRILKRANQAKAAGEAT 65 
                  555.89*******************986555544 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.055
    PF13671.1  54 rlyqilnklarkalsagrsvivdat 78 
                    ++++  +++ ++s+g  ++vd+t
  MMETSP0890-20130614|20959_1  80 TYIEATMPIIEHYRSKGILYVVDST 104
                  3445666899999999999999998 PP

>> PF01712.14  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.5e-05      0.25      68      93 ..      34      59 ..      16      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.5e-05
                 ----EEEE--HHHHHHHHHHS--CCC CS
   PF01712.14 68 pdlliYLkvsletcleRikkRgreeE 93
                 ++ + YL++s +++  Ri kR+++ +
  MMETSP0890-20130614|20959_1 34 VPAVLYLETSEQVMQDRILKRANQAK 59
                 57899*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.72
# Mc/sec: 396.06
//
Query:       MMETSP0890-20130614|20975_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-13   48.2   0.0    9.3e-13   47.9   0.0    1.1  1  PF03959.8  Serine hydrolase (FSH1)
    0.00021   20.9   0.0    0.00026   20.6   0.0    1.1  1  PF12695.2  Alpha/beta hydrolase family
    0.00079   19.2   0.1       0.48   10.1   0.0    2.1  2  PF12697.2  Alpha/beta hydrolase family
     0.0016   17.9   0.0       0.35   10.2   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold
     0.0024   17.6   0.0     0.0034   17.1   0.0    1.2  1  PF08386.5  TAP-like protein
  ------ inclusion threshold ------
      0.099   11.9   0.0        0.1   11.9   0.0    1.1  1  PF02230.11 Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   4.1e-16   9.3e-13      87     201 ..      32     137 ..      10     146 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 4.1e-16
    PF03959.8  87 eesldavkdyikengpfdGiiGFSqGaalaallaslleellkeakhpklkfailvsGfkleepk.yeeyyeedkiqtpsLhvlGelDtvvdeerseaLaeafknsskvlkHpggHf 201
                  e ++d  +  ++e    d i+GFSqGa +a++l++  e+ + + + p    ++l++G+++   k   +++  ++++ p L vl e+Dtvv ++  + +a+ f++ +++ +H+ gH+
  MMETSP0890-20130614|20975_1  32 ETAIDDAESLVSE---PDAILGFSQGANFATMLVARAERRRGK-RIP----CVLMCGARPGWAKqCPDLF-VSQLNSPALVVLAENDTVVGPDGPRLMADLFTK-THICTHKEGHK 137
                  4444444444443...479*******************98763.333....8999*****7766356677.7889*****************************.**********7 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-07   0.00026      47     119 ..      32     116 ..      10     136 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.1e-07
    PF12695.2  47 krvlaadll..dleriilvGhSlGGgvalelag....rd.drvkglvllap......f.pdgedlakltlpvllihGtrDgvvppee 119
                  ++++ +d++    e+ +++G+S+G+ +a++l++    r+ +r+  + + ++      + p +  +++l+ p l++ +++D+vv p+ 
  MMETSP0890-20130614|20975_1  32 ETAI-DDAEslVSEPDAILGFSQGANFATMLVAraerRRgKRIPCVLMCGArpgwakQcP-DLFVSQLNSPALVVLAENDTVVGPDG 116
                  4444.4444454567899***************777644578888888888767444224.445789999*************7765 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00021      0.48      53      96 ..      28      78 ..       6      88 .. 0.68
   2 !    7.4   0.0    0.0014       3.3     172     215 ..      94     136 ..      82     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00021
                 HHHHHHHHHH--....--EEEE--------HHHHHH----.....EEEEEE CS
    PF12697.2 53 aadlaalldalgl...rpvvlvGHSlGgavalaaaarrpd....lvrglvl 96
                   d++ ++d +     +p  ++G S+G+  a++++ar  +    ++  +++
  MMETSP0890-20130614|20975_1 28 YKDIETAIDDAESlvsEPDAILGFSQGANFATMLVARAERrrgkRIPCVLM 78
                 3477777776666777899***************98865533334444444 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0014
                  HTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSS CS
    PF12697.2 172 larldvPvlviageaDrvvppeearrlaealpgarvvvlpgagH 215
                  +++l  P+lv+ +e+D vv p+  r +a+ + ++ + +++  gH
  MMETSP0890-20130614|20975_1  94 VSQLNSPALVVLAENDTVVGPDGPRLMADLFTKTHICTHK-EGH 136
                  567789****************999999988877776665.666 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0033       7.6      47      67 ..      47      67 ..      23      83 .. 0.81
   2 !   10.2   0.0   0.00015      0.35     171     214 ..      94     136 ..      80     139 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0033
                 EEEE-B---HHHHHHHHHCGG CS
   PF00561.15 47 tlvGhSmGGmialayaaeypd 67
                 +++G+S+G+ +a+++ a++  
  MMETSP0890-20130614|20975_1 47 AILGFSQGANFATMLVARAER 67
                 689*************99876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00015
                  HHT-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHC CS
   PF00561.15 171 lktilvptlvisgtdDplvpykaseklaelipksqlvvidgpgH 214
                  +++ + p lv+ +++D +v +++ + +a+l+ k   ++ +  gH
  MMETSP0890-20130614|20975_1  94 VSQLNSPALVVLAENDTVVGPDGPRLMADLFTKTHICTHKE-GH 136
                  567899*************************9987777666.66 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0034      13      76 ..      77     139 ..      70     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-06
    PF08386.5  13 lsCagwpvspqrprdelkakgappvLlvqnelDPatpyegakklaralggavlvtvegeGHgal 76 
                  l+C ++p   ++ +d  +++ ++p+L+v +e+D ++++ g + +a+ ++  +++  ++eGH+ l
  MMETSP0890-20130614|20975_1  77 LMCGARPGWAKQCPDLFVSQLNSPALVVLAENDTVVGPDGPRLMADLFT-KTHICTHKEGHKPL 139
                  4588999888888888888889***************************.58899999999865 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.5e-05       0.1     107     172 ..      46     115 ..       8     158 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
   PF02230.11 107 iiigGFSqGaalalylaltspk....plggivafsgalplnqkleqsatkvakipilqlHgeeDevvpla 172
                   +i GFSqGa  a+ l+   +     ++ +++ ++ +   +++ ++ + ++ + p l +  e D vv   
  MMETSP0890-20130614|20975_1  46 DAILGFSQGANFATMLVARAERrrgkRIPCVLMCGARPGWAKQCPDLFVSQLNSPALVVLAENDTVVGPD 115
                  4799*********999987765444567777777766666666666555544667777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 527.85
//
Query:       MMETSP0890-20130614|20982_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-46  154.6   0.0    2.4e-45  152.9   0.0    1.9  2  PF13793.1  N-terminal domain of ribose phosphate pyrophosphokinase
    2.9e-19   69.8  16.1    1.5e-15   57.6  11.2    3.2  1  PF03105.14 SPX domain
      1e-10   41.2   0.3    5.9e-08   32.3   0.0    3.3  3  PF00156.22 Phosphoribosyl transferase domain
     0.0094   15.6   7.7     0.0094   15.6   5.3    2.2  2  PF09744.4  JNK_SAPK-associated protein-1
  ------ inclusion threshold ------
       0.15   12.1   5.2       0.37   10.8   3.6    1.6  1  PF05062.7  RICH domain
       0.54    9.9   3.7        1.2    8.7   0.0    2.2  2  PF11237.3  Protein of unknown function (DUF3038)
        5.1    7.3   5.6        9.9    6.4   0.0    2.9  3  PF14115.1  YuzL-like protein


Domain annotation for each model (and alignments):
>> PF13793.1  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   1.2e-48   2.4e-45       1     116 []     202     318 ..     202     318 .. 0.99
   2 ?   -2.2   0.0       1.5   2.9e+03      45      83 ..     416     450 ..     408     453 .. 0.66

  Alignments for each domain:
  == domain 1    score: 152.9 bits;  conditional E-value: 1.2e-48
    PF13793.1   1 lkivsgssskelaekiakalgvelgkisvkrfadgeikveieesvrgkdvfivqslsksvndnlmelliiidalkrasAkritaViPylgysrqdrk.ksrepitaklvaqlLeaaG 116
                  lk++sgs++k+lae+ia++lg++l+ ++v+rf+dge+++++ +svrg++vfivq+++++vnd+l+ell++i+a++rasA ++taV+Py+gy+rqdrk +sr+pi+a+ va+++ea+G
  MMETSP0890-20130614|20982_1 202 LKLISGSANKPLAEEIAARLGIPLSPAKVRRFNDGEVNIQLCDSVRGCSVFIVQPTCPPVNDHLVELLLLISAARRASAASVTAVVPYYGYARQDRKdRSRVPISAADVARMMEAMG 318
                  689**********************************************************************************************999****************9 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.5
    PF13793.1  45 vrgkdvfivqslsksvndnlmelliiidalkrasAkrit 83 
                  v ++d++iv ++     d + +l+  ++ lk  +A+r+ 
  MMETSP0890-20130614|20982_1 416 VSNCDCIIVDDMI----DTAGTLCAAANELKSFGARRVF 450
                  5556666665554....4466777777888888888876 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6  11.2   7.7e-19   1.5e-15       3     267 ..       2     157 ..       1     162 [. 0.79

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 7.7e-19
   PF03105.14   3 FgkkLqqnlvpeWrdkYidYkaLKklIkkivneleeygleketlesllqnhqptpapkprsqsfastapsvattepessrllntedgekseseFfkaLdkElekvddFykekekeleerledLekqletlaerrtkksdeykarqeeqlyieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdserrelsrdseslsletkfknkakrklkkalqelyrelelLksYqeLNrtAfrKIlKKyDKqtgsslr 267
                  Fg  L+q++v+ W + Yi Y++LK lIkki+ e e+                                                 +++k+e++Ff  L++Elekv+ Fy ek+ke+e+++e+Le    + +++++  s+              +  +s++ +m ++                                                  +  ++ + ++++++l+ ++ +L++ + LN  +f KI+KKyDK +g++ +
  MMETSP0890-20130614|20982_1   2 FGLDLKQQIVEGWESGYIGYDDLKELIKKISSEMEKE------------------------------------------------TKKKREEDFFLLLEDELEKVNRFYLEKVKEFENEVERLEATAARRQAKKK--SRGGAD---------DTEIKSEELKMMSS--------------------------------------------------LALSEPTEQERMIKLHAQIGQLQASVWLNTQGFEKIMKKYDKFMGLRHT 157
                  8999**************************9988876................................................8899*********************************9986644333333..332222.........11122222222222..................................................3333445589********************************9988765 PP

>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.58   1.1e+03       5      27 ..      19      41 ..      16      44 .. 0.80
   2 !    4.9   0.0    0.0096        19      40      62 ..     212     234 ..     208     301 .. 0.89
   3 !   32.3   0.0     3e-11   5.9e-08      29     119 ..     363     449 ..     348     455 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.58
                 E----HHHHHHHHHHHHHHHT-- CS
   PF00156.22  5 ldpedlreagrllaeklreekgk 27
                 + ++dl+e++++++++  +e +k
  MMETSP0890-20130614|20982_1 19 IGYDDLKELIKKISSEMEKETKK 41
                 56899********9998777665 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0096
                  --HHHHHHHHHHHHHH-----SS CS
   PF00156.22  40 platelaraLglpldlvrvrkss 62 
                  pla+e+a++Lg+pl  + vr+  
  MMETSP0890-20130614|20982_1 212 PLAEEIAARLGIPLSPAKVRRFN 234
                  99**************9998864 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 3e-11
                  -EEEEEE------HHHHHH...HHHHHHHH-----SS-SEE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EE CS
   PF00156.22  29 dvvvGiargGvplatelar...aLglpldlvrvrkssapassetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakev 119
                  +v+v +++gGv  a+   +   +L++p  + +           ++r    ++ ++++  d+++ +++iVDD+++t gTl aa++ Lk++ga++v
  MMETSP0890-20130614|20982_1 363 PVIVSPDAGGVARAKLFMEgfsRLENPPEVSLA-------VILKQRAAAGVVASMHLVGDVSNCDCIIVDDMIDTAGTLCAAANELKSFGARRV 449
                  567888888888877776521144445555443.......45688999999999************************************9977 PP

>> PF09744.4  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   5.3   4.8e-06    0.0094      58     136 ..      27     105 ..      19     112 .. 0.74
   2 ?    1.0   0.4      0.15     3e+02      55      92 ..     137     174 ..     116     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.8e-06
    PF09744.4  58 dkerLskqyerekelrkqaeek.llelEdeleqekkelekkieeleeevrqlelk.aknlsdkvsrLeeretelkkeyesl 136
                   ++++s ++e  ke +k++ee  +l lEdele++++ + +k++e+e+ev  le   a+  ++k sr    +te+k+e  ++
  MMETSP0890-20130614|20982_1  27 LIKKISSEME--KETKKKREEDfFLLLEDELEKVNRFYLEKVKEFENEVERLEATaARRQAKKKSRGGADDTEIKSEELKM 105
                  4455555555..555555555515569*************************97625777888899888889988876655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.15
    PF09744.4  55 leedkerLskqyerekelrkqaeekllelEdeleqekk 92 
                   ++  e+++k+y +   lr+  + k  e+E  l++e+ 
  MMETSP0890-20130614|20982_1 137 NTQGFEKIMKKYDKFMGLRHTDKAKTPEFESRLRNEAF 174
                  55666788888999999999999999999998888764 PP

>> PF05062.7  RICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.6   0.00019      0.37      10      64 ..      23      77 ..      20      90 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
    PF05062.7 10 eVkeylekiLseikkqldKrkhtqnvaLik.kLseIkteyLyelkvlkekkaelee 64
                 + ke ++ki se +k+ +K+++ + + L++ +L+++++ yL ++k+ +++ +e  e
  MMETSP0890-20130614|20982_1 23 DLKELIKKISSEMEKETKKKREEDFFLLLEdELEKVNRFYLEKVKEFENE-VERLE 77
                 578999*****************998877538***************999.33322 PP

>> PF11237.3  Protein of unknown function (DUF3038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.9      0.15   2.9e+02      82     137 ..      23      77 ..      21      88 .. 0.88
   2 ?    8.7   0.0   0.00063       1.2     104     165 ..     173     233 ..     165     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.15
    PF11237.3  82 rlqpliRqllslleqlsskekeplqqallseylerfreliqermnerrsavkklLa 137
                   l++li+++ s +e+ ++k++e++   ll++ le+ ++++ e+++e + +v++l +
  MMETSP0890-20130614|20982_1  23 DLKELIKKISSEMEKETKKKREEDFFLLLEDELEKVNRFYLEKVKEFENEVERL-E 77 
                  58899*****************************************99999998.3 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00063
    PF11237.3 104 plqqallseylerfreliqermnerrsavkklLaseekleelalkLlveLlfysgpgGvqRL 165
                    +  +l+  lerf+ l++ rmn++++ v+  L s  ++++la ++   L    +p+ v+R+
  MMETSP0890-20130614|20982_1 173 AFKSDRLETILERFK-LMRTRMNTEQGRVELKLISGSANKPLAEEIAARLGIPLSPAKVRRF 233
                  5567899999****6.89**************************999988777777766666 PP

>> PF14115.1  YuzL-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.053     1e+02      25      42 ..      70      87 ..      69      88 .. 0.91
   2 ?   -4.1   0.4         7   1.4e+04      13      18 ..     279     284 ..     278     284 .. 0.88
   3 ?    6.4   0.0    0.0051       9.9       4      17 ..     297     310 ..     294     311 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.053
    PF14115.1 25 eeetGggkrdSanqqyKk 42
                 e+e+++ +++ a++q Kk
  MMETSP0890-20130614|20982_1 70 ENEVERLEATAARRQAKK 87
                 5899*************9 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 7
    PF14115.1  13 SAasVk 18 
                  SAasV+
  MMETSP0890-20130614|20982_1 279 SAASVT 284
                  9***96 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0051
    PF14115.1   4 KKdPSkaGvSAasV 17 
                   Kd+S+  +SAa+V
  MMETSP0890-20130614|20982_1 297 RKDRSRVPISAADV 310
                  7************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1203  (0.0879901); expected 273.4 (0.02)
Passed bias filter:                      603  (0.0441047); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.01u 0.26s 00:00:01.27 Elapsed: 00:00:00.99
# Mc/sec: 1280.48
//
Query:       MMETSP0890-20130614|21000_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   14.1   1.5       0.17   12.1   0.0    2.1  2  PF12200.3  Domain of unknown function (DUF3597)
      0.077   12.4   3.5      0.099   12.1   2.4    1.1  1  PF00769.14 Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> PF12200.3  Domain of unknown function (DUF3597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.17      37      73 ..      59      95 ..      34      99 .. 0.81
   2 ?    1.0   0.2     0.068   4.7e+02      16      40 ..     128     152 ..     104     171 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.4e-05
    PF12200.3 37 aapaaapaaaaevdvaavldklaakkgeklnwrtSiV 73
                 a  a + a +++v+++++l++++++ ge++ w   iV
  MMETSP0890-20130614|21000_1 59 ALHANVAARQNKVEMKEILNQANRAAGERVKWEARIV 95
                 44477778899**********************9999 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.068
    PF12200.3  16 aaapaaaaapaasaaaaaaataapa 40 
                  + ++++++++ ++++++ ++++apa
  MMETSP0890-20130614|21000_1 128 SSSSSSKKSSLSTSSQQDQSSSAPA 152
                  2222222222222333333333333 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.4   1.4e-05     0.099      74     170 ..      54     146 ..      53     165 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
   PF00769.14  74 ekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeeakeellevlaaptaps.aavsep.....enseklvqgdngeeaskdletdnemkd 170
                  e+e   L++ v++ + +v+  e  +++  a  e+++ e+r +++a+++a++++       ++ +  ++++p     +      ++ + ++ +  l+t  ++++
  MMETSP0890-20130614|21000_1  54 EEEYAALHANVAARQNKVEMKEILNQANRAAGERVKWEARIVKDAQRRAANQN---F-RDHTVQePQIATPiddyqN-----SSSSS-SSKKSSLSTSSQQDQ 146
                  678889******************************************99986...2.3333443679999544331.....22222.223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       864  (0.0631949); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 589.10
//
Query:       MMETSP0890-20130614|21025_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.15   12.0   0.0    1.1  1  PF13734.1 Spi protease inhibitor


Domain annotation for each model (and alignments):
>> PF13734.1  Spi protease inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05      0.15      36      85 ..       3      55 ..       1      60 [. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
    PF13734.1 36 stPvdt..elfiialnegGfilvsGdtr.apdllavtedgnldksnadvrsgl 85
                 s   dt  +++++a ++ G +++ G +   ++ll v+  g ld++ a+    +
  MMETSP0890-20130614|21025_1  3 SIAEDTrlDFYMLAYSPDGTVIACGLSNgYNELLQVSRIGLLDRNYAECIRSI 55
                 566788667799999**********7652789*************99876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 376.57
//
Query:       MMETSP0890-20130614|21023_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-20   70.6   0.8      1e-10   41.6   0.0    3.2  3  PF12796.2  Ankyrin repeats (3 copies)
    2.8e-13   49.8   0.3    6.7e-11   42.2   0.0    3.4  4  PF13637.1  Ankyrin repeats (many copies)
    1.7e-12   46.3   0.0    9.4e-07   28.2   0.0    4.3  4  PF00023.25 Ankyrin repeat
      5e-12   45.5   0.0    1.7e-06   27.9   0.0    3.4  3  PF13857.1  Ankyrin repeats (many copies)
      8e-09   34.7   0.0    0.00022   21.0   0.0    3.6  4  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.052   13.4   0.0       0.17   11.8   0.0    1.9  1  PF08289.6  Influenza Matrix protein (M1) C-terminal domain
        6.6    6.4   8.4       0.32   10.7   1.6    2.0  2  PF11093.3  Mitochondrial export protein Som1


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   5.3e-14     1e-10      11      89 .]      20      97 ..       9      97 .. 0.85
   2 !   26.1   0.0   3.8e-09   7.3e-06      26      85 ..     100     173 ..      96     177 .. 0.91
   3 ?   -1.0   0.0         1     2e+03      18      36 ..     419     435 ..     395     442 .. 0.66

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 5.3e-14
    PF12796.2 11 elvklLlekgadvdlgetpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89
                 + ++l+l++++++   + +L + ++ag ++ v++Ll+  +a++++ + ++nt+Lh+A+r g++e++++Ll+ g++v++r+
  MMETSP0890-20130614|21023_1 20 KFAQLILNENKKCI--DAVLLAVVQAGWFQGVEFLLKeTNASIQEVTPSKNTALHFAAREGNVEIIQILLKFGSEVSSRN 97
                 45667778889999..99******************94567888888*****************************9987 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 3.8e-09
    PF12796.2  26 getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvr..............nghlelvklLlekgadv 85 
                  ++tp+++Aa agn+++++ Ll+ ++d++a d++g+++L l +               +  + +v+ Ll++g+ +
  MMETSP0890-20130614|21023_1 100 QQTPVMYAATAGNFAALQKLLQIKQDIQAIDASGRSALDLSCVgalnaqgededddsSSYAQCVQALLTAGSHP 173
                  589*************************************9988999999999999999999999999999876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1
    PF12796.2  18 ekgadvdlgetpLhlAaea 36 
                  +k+++    +++Lh+A+++
  MMETSP0890-20130614|21023_1 419 QKEKSAL--QEALHIASSK 435
                  3334444..6688888765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.3   6.5e+03      38      54 .]      37      53 ..      21      63 .. 0.65
   2 !   42.2   0.0   3.4e-14   6.7e-11       2      54 .]      68     120 ..      67     120 .. 0.98
   3 ?    4.6   0.0     0.022        44      24      42 ..     123     141 ..     117     167 .. 0.83
   4 ?   -3.3   0.0       6.6   1.3e+04       4      12 ..     428     436 ..     427     442 .. 0.58

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.3
    PF13637.1 38 LhiAalrgnieilklLl 54
                 L  ++++g ++ +++Ll
  MMETSP0890-20130614|21023_1 37 LLAVVQAGWFQGVEFLL 53
                 44445666666666665 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 3.4e-14
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  +taLh aa+ g++e+++ Ll++g ++  +++ + t++ +Aa +gn+ +l+ Ll
  MMETSP0890-20130614|21023_1  68 NTALHFAAREGNVEIIQILLKFGSEVSSRNSAQQTPVMYAATAGNFAALQKLL 120
                  79************************************************997 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.022
    PF13637.1  24 gidinrtdesGntaLhiAa 42 
                  ++di ++d+sG++aL++ +
  MMETSP0890-20130614|21023_1 123 KQDIQAIDASGRSALDLSC 141
                  78999***********987 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 6.6
    PF13637.1   4 aLhyaaisg 12 
                  aLh a ++ 
  MMETSP0890-20130614|21023_1 428 ALHIASSKF 436
                  566666555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.8e-10   9.4e-07       3      32 ..      68      97 ..      66      98 .. 0.95
   2 !    9.4   0.0   0.00042      0.83       3      32 ..     101     130 ..     100     131 .. 0.90
   3 ?    2.6   0.0     0.062   1.2e+02      13      28 ..     144     173 ..     132     175 .. 0.67
   4 ?   -0.6   0.0      0.63   1.2e+03       5      11 ..     428     434 ..     428     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 4.8e-10
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25  3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32
                 +T+LH Aa+ gn+e+++ Ll+ G ++  ++
  MMETSP0890-20130614|21023_1 68 NTALHFAAREGNVEIIQILLKFGSEVSSRN 97
                 8*************************9998 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00042
                  CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +TP ++Aa  gn   ++ Ll+   d+ a d
  MMETSP0890-20130614|21023_1 101 QTPVMYAATAGNFAALQKLLQIKQDIQAID 130
                  7********************888888776 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.062
                  T..............HHHHHHHHHHTTSST CS
   PF00023.25  13 g..............nlevvklLlsqGAdl 28 
                                 ++++v+ Ll +G  +
  MMETSP0890-20130614|21023_1 144 AlnaqgededddsssYAQCVQALLTAGSHP 173
                  45555555555555689********99865 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.63
                  HHHHHHH CS
   PF00023.25   5 PLHlAal 11 
                  +LH+A++
  MMETSP0890-20130614|21023_1 428 ALHIASS 434
                  7****97 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   8.5e-10   1.7e-06       1      53 [.      52     104 ..      52     104 .. 0.91
   2 !   18.0   0.0   1.2e-06    0.0023      13      55 ..      97     139 ..      91     140 .. 0.91
   3 ?   -2.2   0.0       2.7   5.2e+03      29      42 ..     160     173 ..     158     175 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 8.5e-10
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                  Ll++ +a++    +++nt+Lh+Aa+ g++e++++Ll++g+    r+s  +t++
  MMETSP0890-20130614|21023_1  52 LLKETNASIQEVTPSKNTALHFAAREGNVEIIQILLKFGSEVSSRNSAQQTPV 104
                  6666688999999999*******************************999986 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.2e-06
    PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldl 55 
                  + + +tp ++Aa +g+  ++++Ll+   d+ + d++g++aldl
  MMETSP0890-20130614|21023_1  97 NSAQQTPVMYAATAGNFAALQKLLQIKQDIQAIDASGRSALDL 139
                  55566*************************************7 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.7
    PF13857.1  29 levvrlLlapgadl 42 
                  +++v+ Ll +g+++
  MMETSP0890-20130614|21023_1 160 AQCVQALLTAGSHP 173
                  789*****777665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.1e-07   0.00022       3      28 ..      68      93 ..      66      95 .. 0.92
   2 !    9.4   0.0   0.00064       1.3       2      28 ..     100     126 ..      99     128 .. 0.88
   3 ?   -3.3   0.0         7   1.4e+04      17      26 ..     162     171 ..     156     173 .. 0.74
   4 ?   -3.2   0.0         7   1.4e+04       5      11 ..     428     434 ..     426     438 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.1e-07
    PF13606.1  3 nTpLhlAasngrielveaLlengadi 28
                 nT+Lh Aa+ g++e++++Ll+ g  +
  MMETSP0890-20130614|21023_1 68 NTALHFAAREGNVEIIQILLKFGSEV 93
                 9********************99766 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00064
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                   +Tp ++Aa  g+ ++++ Ll+   di
  MMETSP0890-20130614|21023_1 100 QQTPVMYAATAGNFAALQKLLQIKQDI 126
                  58*******************976666 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 7
    PF13606.1  17 lveaLlenga 26 
                   v+aLl +g 
  MMETSP0890-20130614|21023_1 162 CVQALLTAGS 171
                  5899999885 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 7
    PF13606.1   5 pLhlAas 11 
                  +Lh+A s
  MMETSP0890-20130614|21023_1 428 ALHIASS 434
                  7999976 PP

>> PF08289.6  Influenza Matrix protein (M1) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.7e-05      0.17      17      85 ..     123     192 ..     112     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.7e-05
    PF08289.6  17 rrenrmvlas.ttakameqmagssekaeevqklaeelrsnvqvlrvlGasqksseGlkkdllevlkayqk 85 
                  +++ + + as   a  +  +++ + ++e+  + ++   + vq+l + G+++k++  l +d l  +++ +k
  MMETSP0890-20130614|21023_1 123 KQDIQAIDASgRSALDLSCVGALNAQGEDEDDDSSSYAQCVQALLTAGSHPKNALSLVRDALPKIQSEKK 192
                  56666666652356667778888899************************************99996554 PP

>> PF11093.3  Mitochondrial export protein Som1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   0.00016      0.32       2      51 ..     232     281 ..     231     286 .. 0.91
   2 ?   -3.3   0.3       3.6   7.1e+03      21      21 ..     344     344 ..     328     362 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
    PF11093.3   2 aPPvpvlsleevesqlktllenkekkkCaLksltqyeCtfkvskddskpp 51 
                  +PP++  s+  +++q k+ ++n++  + + +++t ++ tf+ +k ++  +
  MMETSP0890-20130614|21023_1 232 TPPTTTNSKRRIKKQKKKIEKNHSVPNTSTRQMTTHQTTFQENKIEQPSS 281
                  7**********************999***************998876644 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.6
    PF11093.3  21 l 21 
                  +
  MMETSP0890-20130614|21023_1 344 D 344
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1411  (0.103204); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.53s 00:00:01.17 Elapsed: 00:00:00.88
# Mc/sec: 1206.35
//
Query:       MMETSP0890-20130614|21028_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-15   56.0   4.2    3.6e-15   56.0   2.9    1.5  2  PF00428.14 60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.0         1   1.4e+04      73      75 ..       4       6 ..       2      15 .. 0.38
   2 !   56.0   2.9   2.6e-19   3.6e-15       3      87 ..      46     126 ..      44     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 1
   PF00428.14 73 eee 75
                 eee
  MMETSP0890-20130614|21028_1  4 EEE 6 
                 222 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 2.6e-19
   PF00428.14   3 taadikavlkaagveveaerlkllvkalegk.dikeliangsaklaaaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                  +++  +avlka+g ev ++++k++ kal++k ++++ + +++      ++ +  +aaa+aaa+aaee+k+eeee  ee+ dmG+g+
  MMETSP0890-20130614|21028_1  46 SEERFQAVLKASGNEVAPYWIKVFSKALTKKgSLESFLPKPGGG---GGGGGGGGAAADAAAPAAEEKKEEEEE--EEEIDMGGGM 126
                  5777899**********************8879999**999955...445566666666666666666666664..8899***774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.31s 00:00:00.60 Elapsed: 00:00:00.59
# Mc/sec: 564.57
//
Query:       MMETSP0890-20130614|21029_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-25   88.3   0.1    8.1e-25   87.2   0.0    1.5  2  PF04827.9 Plant transposon protein
    9.1e-16   57.7   0.1    1.8e-15   56.8   0.1    1.5  1  PF13359.1 DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.026   13.1   0.0      0.042   12.4   0.0    1.2  1  PF05794.8 T-complex protein 11


Domain annotation for each model (and alignments):
>> PF04827.9  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.77   3.5e+03     153     186 ..      81     114 ..      75     115 .. 0.82
   2 !   87.2   0.0   1.8e-28   8.1e-25      10     202 ..     185     382 ..     178     385 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.77
    PF04827.9 153 arkdverafGvlqarfkivakparlwekedlaki 186
                  +rk     f v  +rf+ + + +r+w  ed +ki
  MMETSP0890-20130614|21029_1  81 QRKKFRDRFRVSFTRFENLLELTRSWLDEDGKKI 114
                  68888889999999**999999999988776655 PP

  == domain 2    score: 87.2 bits;  conditional E-value: 1.8e-28
    PF04827.9  10 edverllkigesrgfpgmlgsldcmhwkwkncptawkgqytrgdkksptiileavasydlwiwhaffglpgsnndinvldrsplfadilkGe.aprvkyvvn....ekqynla.yyladGiypkwatlvksirlpqlekkklfaqkqeaarkdverafGvlqarfkivakparlwekedlakimkaciilhnmiveder 202
                  +d+++ ++i    g+pg  gs+d++h  w  cp   k     g++ +pt+ ++   ++   i ++  g  g+ nd  ++   +   d+ + +  +++ +++     +++   + y ++dG y  w  l  +i++   + +++f+ + e+ rkdve+ fG+++ r ki+ +  ++ e +++ ++  ac i+hnm++ed++
  MMETSP0890-20130614|21029_1 185 DDLKHTIEIYAKCGLPGCCGSVDVVHIPWVICPSGLKSACN-GKEGYPTVAYQVTVDHLKRIRNSTNGFFGARNDKHIVRSDKFVVDLKEKKiYSDIGFTLRlpdgGTKRVRGlYLICDGGYHFWRVLQCTIKNASDDDTRVFSSRVESLRKDVECVFGIMKKRHKILCRGIEIRELQHIDNVFFACCIIHNMLLEDDG 382
                  57888999999**************************9877.*************************************999999999887625789999864443344444416679*******************************************************************************86 PP

>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1     4e-19   1.8e-15      25     153 .]     227     375 ..     206     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 4e-19
    PF13359.1  25 kkhn.tlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklk...................q..pgdvvlaDrgfplsdkllvpykkkkqlseeeeefnrrlasarihvervigrlKgrfkilkgrlrikklekldkivlvccvLhN 153
                  k ++ t+ ++v+vd+  +i+    g+ G   Dk+++++ ++   lk                   +  +g +++ D g++  + l +    k+  +++ + f +r+ s+r  ve+v+g++K+r kil + ++i+ l+++d+++ +cc++hN
  MMETSP0890-20130614|21029_1 227 KEGYpTVAYQVTVDHLKRIRNSTNGFFGARNDKHIVRSDKFVVDLKekkiysdigftlrlpdggtKrvRGLYLICDGGYHFWRVLQCTI--KNASDDDTRVFSSRVESLRKDVECVFGIMKKRHKILCRGIEIRELQHIDNVFFACCIIHN 375
                  44456***************************************999999999999999987765268999*********999666777..68889999****************************99*********************9 PP

>> PF05794.8  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.3e-06     0.042     162     207 ..      66     115 ..      64     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.3e-06
    PF05794.8 162 IrllrplLienaveyerkkFqell....ekaknslpstkkWlkkaaseee 207
                  +rl+r+ + +++ ++ rkkF++++    ++ +n l+ t+ Wl +  ++ +
  MMETSP0890-20130614|21029_1  66 LRLVRAEIEDDTTNFQRKKFRDRFrvsfTRFENLLELTRSWLDEDGKKIF 115
                  899********************99999999***********98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.52s 00:00:01.20 Elapsed: 00:00:00.83
# Mc/sec: 1397.39
//
Query:       MMETSP0890-20130614|21026_1  [L=1352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-21   74.5   0.0    2.3e-20   73.1   0.0    1.7  2  PF10469.4  AKAP7 2'5' RNA ligase-like domain
    1.7e-12   47.3   0.6    7.2e-12   45.2   0.2    2.3  2  PF13671.1  AAA domain
    1.6e-08   34.0   0.0      5e-08   32.4   0.0    1.8  2  PF10307.4  Hypothetical protein (DUF2410)
    1.4e-06   27.9   0.0    4.2e-05   23.1   0.0    2.6  2  PF13563.1  2'-5' RNA ligase superfamily
    4.4e-06   25.9   0.0      8e-06   25.1   0.0    1.4  1  PF08433.5  Chromatin associated protein KTI12
    0.00049   20.1   0.0      0.003   17.5   0.0    2.5  1  PF13401.1  AAA domain
     0.0013   19.4   0.0     0.0037   17.9   0.0    1.7  1  PF13207.1  AAA domain
  ------ inclusion threshold ------
      0.048   13.5   0.0        1.6    8.6   0.0    3.2  3  PF02834.11 LigT like Phosphoesterase


Domain annotation for each model (and alignments):
>> PF10469.4  AKAP7 2'5' RNA ligase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.5   7.8e+03     101     144 ..     124     165 ..     122     197 .. 0.67
   2 !   73.1   0.0   1.3e-23   2.3e-20       1     198 [.     297     490 ..     297     494 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 4.5
    PF10469.4 101 lYakveeeseerLqkladvivdafvkaglvlekdkkqsvklHvT 144
                  +Ya+v+   +++L ++a+++    +  g+v+++++ ++vk+  T
  MMETSP0890-20130614|21026_1 124 IYARVHGSTKQTLLNIARRLPAYIE--GFVAQDSSGRRVKIKGT 165
                  7999998888999999998876653..45555555555555444 PP

  == domain 2    score: 73.1 bits;  conditional E-value: 1.3e-23
    PF10469.4   1 pthFislplnspelveklkefqesvlskdpgldkslfikpeklHlTllvlkLknkeeieaakevLkeikeeikdaldnkplslrlkgletfnddpakarVlYakveeeseerLqkladvivdafvkaglvlekdkkqsvklHvTlmnvrkkkkrkyesf.dareilkkfk.dedfgevkineihLsqm..fskdekdgyYkv 198
                  p++F+++++ +p + +++  +q+++++ d +l k  +++  +lH+Tl + ++++++++ + kevL +i +++  +   +   ++++g++ f+    + +V++++  e  ++rL  l+d i +  ++ g+ + + + q   +H+T++++ ++  r    f   +   + f+ +++fg + +n+++L++   +    ++g+Y++
  MMETSP0890-20130614|21026_1 297 PNYFVCIKIDNPAILNHVRVLQQALVDFDSEL-KASLQPIYSLHITLATAYVNSRQQLTKLKEVLARIVPNLLAT-YLSIGAITIEGVNSFRV---RGQVVFIEPVE--QGRLIALMDCIYNVIESIGILAAGRRAQ-NRPHITVAKLPRALVRSIGFFdESAWRCRGFGpKSNFGIQYVNTLELCEVglNGGTAPSGFYRT 490
                  8*******************************.************************************999999.458899***********...99*****7764..69********************999888.9*********99777754445222223445543899*************833344566899987 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3     4e+03      42      71 ..     347     376 ..     313     379 .. 0.74
   2 !   45.2   0.2   4.2e-15   7.2e-12       1     122 [.     524     645 ..     524     656 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.3
    PF13671.1  42 qqsktdytrvlkrlyqilnklarkalsagr 71 
                   +s ++ t++++ l +i+ +l++++ls g+
  MMETSP0890-20130614|21026_1 347 VNSRQQLTKLKEVLARIVPNLLATYLSIGA 376
                  334445667888888999999999999886 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 4.2e-15
    PF13671.1   1 lvllvGlpGsGKstlaerllkklg....yvrlsqdtlrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvri..vylevpeetlreRlakRerng 122
                  ++++ G pGsGK+++a+++ ++ +    + + s+d++ +r     q + t+ ++++ ++ + + ++a   ls+ r vi+d+tn++ +e a +++la +l+  ++i  v +e++    ++R a R+ ++
  MMETSP0890-20130614|21026_1 524 MLICRGCPGSGKTFFAQQVKQRIQqfatCQVCSADYYFERRG---QFDATNLAHAHAECKNSV-RTA--LLSKTRIVIIDNTNCTLNEVATYLDLAASLNSCIHIafVEFECDSLAQARRFALRSVHK 645
                  57999*************977776777788888888777775...445567788888888775.333..6899999************************8876644888888888888888888774 PP

>> PF10307.4  Hypothetical protein (DUF2410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.6   6.1e+03     167     185 ..     654     672 ..     644     676 .. 0.82
   2 !   32.4   0.0   2.9e-11     5e-08      63     148 ..     907     990 ..     902    1005 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.6
    PF10307.4 167 kaeviqvaeevkyLepkvE 185
                  +++vi++++e +yL +++ 
  MMETSP0890-20130614|21026_1 654 RWDVIPIQKEWTYLVVNTQ 672
                  699**********987665 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 2.9e-11
    PF10307.4  63 velslkdkdalsvlLTGRkeskFselieklveskkle.fdavcLkkepaeeefesTlefKqalledlletYkeleeiriYeDRikhv 148
                   e+s++ +++  vl+TGR     + +i+ + + ++le +da ++k++   +  ++  ++K   le++l+t ++++e+++Y+D ++  
  MMETSP0890-20130614|21026_1 907 HERSMSLESSSHVLITGRISRCKEAVIKIIKRYRALEaLDACVFKPN---AWNSKSSHYKACALEQILNTMPNVKEVVVYDDDVNAR 990
                  57899999999********99999999999999999889*******9...77788899************************87655 PP

>> PF13563.1  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.4e-08   4.2e-05      25     118 ..     337     437 ..     308     454 .. 0.85
   2 ?    1.6   0.0      0.11   1.9e+02     106     124 ..     768     786 ..     720     807 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.4e-08
    PF13563.1  25 ppHiTLlypfvepedl.....adlaellsrlaaetepfe.vrldgvgvFehkksvvylsvspseslsaLraallealpeagdkedst.geftPHlTiaqse 118
                   +HiTL+   v +++      + la+ +++l+a +  +  ++++gv++F+ +++vv++++  + +l aL + +++ ++  g + + +  + +PH+T+a  +
  MMETSP0890-20130614|21026_1 337 SLHITLATAYVNSRQQltklkEVLARIVPNLLATYLSIGaITIEGVNSFRVRGQVVFIEPVEQGRLIALMDCIYNVIESIGILAAGRrAQNRPHITVAKLP 437
                  58************99988887788888888888888777999******98888**********************9999766665569*********876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.11
    PF13563.1 106 geftPHlTiaqsedstsak 124
                   +++ H+Ti+++  s++a+
  MMETSP0890-20130614|21026_1 768 LKWQGHITISYAIGSRAAD 786
                  6899999999999888875 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.7e-09     8e-06       1      80 [.     521     600 ..     521     603 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 4.7e-09
    PF08433.5   1 MpLvvlt.GlPssGKstvakeLakaleeegrsvvvisdeslgiekdsykdskkekalRsslrsavkrd.LskekvVIvDsln 80 
                  M L++++ G P sGK+ +a++ ++ +++   +++v s + +  ++ ++ d  +  ++ ++ +++v+++ Lsk+++VI+D++n
  MMETSP0890-20130614|21026_1 521 MSLMLICrGCPGSGKTFFAQQVKQRIQQF-ATCQVCSADYYFERRGQF-DATNLAHAHAECKNSVRTAlLSKTRIVIIDNTN 600
                  88888887*****************9874.567778877777677777.777778899999999988636999********9 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.7e-06     0.003       5      94 ..     523     597 ..     517     625 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.7e-06
    PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiD 94 
                   +l++ G++G+GKT+++++++++ ++           f +++  +   + + +  ++++  + + + ++e+ + ++ al ++ + ++iiD
  MMETSP0890-20130614|21026_1 523 LMLICRGCPGSGKTFFAQQVKQRIQQ-----------FATCQVCS--ADYYFERRGQFDATNLA-HAHAECKNSVRTALLSKTR-IVIID 597
                  689*******************8643...........33333333..22333333333333333.3344455555555555544.55555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.1e-06    0.0037       6      77 ..     529     598 ..     524     653 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.1e-06
                  --TT---HHHHHHHHHHS....TEEEEEGGGB--GGGS-B-----B--SSGGGB-HHHHHHHH....H..HHHHHH CS
    PF13207.1   6 GppGsGKsTlakeLaerl....glpvlslddllreeglkelddgereskdadadllaaildglaakkdtlswvidg 77 
                  G+pGsGK+++a+++++r      ++v+s d ++ ++g      +  +++ + ++ ++  l        t++++id 
  MMETSP0890-20130614|21026_1 529 GCPGSGKTFFAQQVKQRIqqfaTCQVCSADYYFERRGQFDA-TNLAHAHAECKNSVRTALLSK-----TRIVIIDN 598
                  *****************844445999988873344444422.222133344444444433333.....45677777 PP

>> PF02834.11  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00095       1.6       4      60 ..     307     363 ..     305     384 .. 0.89
   2 ?    0.0   0.0      0.44   7.4e+02      32      42 ..     426     436 ..     395     445 .. 0.82
   3 ?   -1.9   0.0       1.7   2.9e+03      36      53 ..     720     737 ..     715     744 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00095
                  THHHHHHHHHHHHHHHHHHHTEEE----GGG-EEEEEEEEEESHHHHHHHHHCCCCH CS
   PF02834.11   4 peeiaeelarlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaei 60 
                  +++i ++++ l++ l +  ++l++++++ + +HiTLa     +++++ +l+e la+i
  MMETSP0890-20130614|21026_1 307 NPAILNHVRVLQQALVDFDSELKASLQPIYSLHITLATAYVNSRQQLTKLKEVLARI 363
                  6677889999999999999999***************99877799999999999988 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.44
                  GGG-EEEEEEE CS
   PF02834.11  32 pfnpHiTLafl 42 
                    +pHiT+a l
  MMETSP0890-20130614|21026_1 426 QNRPHITVAKL 436
                  478*****976 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.7
                  EEEEEEEEEESHHHHHHH CS
   PF02834.11  36 HiTLaflgevdeekvpel 53 
                  H+T+af  ev   ++ ++
  MMETSP0890-20130614|21026_1 720 HVTIAFRPEVGSIQLRAV 737
                  ******988876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.85u 0.40s 00:00:02.25 Elapsed: 00:00:01.51
# Mc/sec: 2145.61
//
Query:       MMETSP0890-20130614|21027_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 177.91
//
Query:       MMETSP0890-20130614|21030_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-212  706.7   0.0   2.2e-212  706.2   0.0    1.2  1  PF02867.10 Ribonucleotide reductase, barrel domain
    5.3e-22   77.3   0.1    1.2e-21   76.1   0.1    1.6  1  PF00317.16 Ribonucleotide reductase, all-alpha domain
    1.8e-14   53.8   0.0    5.5e-14   52.2   0.0    1.9  1  PF03477.11 ATP cone domain
  ------ inclusion threshold ------
      0.032   12.2   0.0       0.05   11.5   0.0    1.2  1  PF13597.1  Anaerobic ribonucleoside-triphosphate reductase
      0.078   12.7   0.1       0.77    9.5   0.0    2.4  2  PF01475.14 Ferric uptake regulator family


Domain annotation for each model (and alignments):
>> PF02867.10  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  706.2   0.0  8.2e-216  2.2e-212       1     537 []     240     769 ..     240     769 .. 0.99

  Alignments for each domain:
  == domain 1    score: 706.2 bits;  conditional E-value: 8.2e-216
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02867.10   1 lssCfvldsveDslesIfdtlkeaaklsksgGGvGlnlsklRakgskikgtggkssGivpflklfdataravdqgG.kRrGaaavylevwHpDieeflelKknegdeeerlrnlnisvwvpdlFmkrvekdedwtlfdpaeakkleelygeefeeeyekleeegkivkkkvkareLwkkilesaietGePyilfkDavNrknpnkhlgtIkssNlCtEivllsspseiavCnLasinLskfvkek.......fdleklkevvrlavrfLdnvidlndypleeieksnkkkRkiGlGvmGladllaklgipydseealeladkifetiayaaieaSvelAkekgpfesfegskyskgilqidkleklieekskklekvkaaveeedweelrekikkyglrNsqltaiaPTgtiSliagttesiePifanvysrknlsgeflvvnpnllkelkklglwseelkeeilaekgsiqdikeipeeikelyktayeidqkklikmaaarqkfidqsiSktlflpedataedlkelylyawklGlKtityYl 537
                  lssCf+l++++Ds+e+I+dtlk +a +sk++GG+Gl+++++Ra++s+i+g +g+s+Gi+p+l++f++tar+vdqgG kR+G++a+yle+wH+Die++l+l+kn+g+e er+r+l++++w+pdlFm+rve++++w+lf+p+eak+l++++g++f+++ye++e+egk ++k+++a++Lw++il+++ietG+Py+l+kDa+N+k++++hlgtIkssNlCtEi++++ p+e+avCnLasinL+++v+e+       fd++kl+++  +++r+L++vid+n+yp+ee+++sn ++R+iG+Gv+Glad+++kl++py+s++a++l+++ifeti++ a+eaS++lAke g++e++egs++s+g lq d ++ +             +++ +dw++lr+++++yg+rNs+l+a +PT+++++i g+tes+ePi+an+y+r++l+gef+vvn++ll++l ++ lw+ e++++++a++gsiq+i++ip+++k+lykt++ei+qk  ++maa+r++fi+qs+S++ ++ +++t ++l++l++ aw++GlKt++yYl
  MMETSP0890-20130614|21030_1 240 LSSCFLLEMKQDSIEGIYDTLKRCACISKYAGGIGLSVHNVRATDSYIRGSNGSSNGIIPMLRVFNDTARYVDQGGgKRKGSFAIYLEPWHADIETWLDLRKNHGNELERARDLFYGLWIPDLFMQRVEANQNWSLFCPNEAKGLADCHGDKFKQLYEQYENEGK-ARKSIPAQQLWFAILDAQIETGTPYMLYKDACNAKSNQQHLGTIKSSNLCTEIIEYTAPDEVAVCNLASINLTAMVQEDtntnnlfFDFDKLRHISGVVCRNLNKVIDINYYPVEEAKNSNFRHRPIGIGVQGLADTFIKLRMPYESQQARDLNRDIFETIYFGALEASIDLAKELGTYETYEGSPISRGLLQPDLWDVK-------------TSNRWDWTSLRAELAQYGCRNSLLLAPMPTASTAQIIGNTESFEPITANLYVRRTLAGEFPVVNKYLLNDLISRDLWTVEVRNQLIAHNGSIQNIAQIPDDLKALYKTVWEIKQKRCLEMAADRGAFICQSQSMNAHV-DNPTHSRLTSLHFFAWRSGLKTGMYYL 769
                  7*******************************************************************************************************************************************************************7.*****************************************************************************99**********************************************************************************************************************442.............12356*************************************************************************************************************************************.99************************6 PP

>> PF00317.16  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.1   4.3e-25   1.2e-21       1      82 [.     166     237 ..     166     238 .. 0.96

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 4.3e-25
   PF00317.16   1 kkltynalkvlearYllkdengeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                  ++++y+++k+le+ Yl++ + g+++E+pq+m+mRvA+++++         +d   a e+y lms+q f++a+Ptl naGt++
  MMETSP0890-20130614|21030_1 166 YNYDYFGFKTLERAYLMRYD-GKVAERPQHMIMRVAIGIHG---------RDLISALETYTLMSQQLFTHATPTLYNAGTPR 237
                  579**************988.99******************.........9999**************************97 PP

>> PF03477.11  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0     2e-17   5.5e-14       1      90 []      26     114 ..      26     114 .. 0.95

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 2e-17
   PF03477.11   1 ikViKRdgtvepfdvekIkraiekAceakaevdeedaeelaeevekqledkkeegisteeIqdlvektli....ehgdydvaaayilyrdlrke 90 
                  ++V+KRdg+ e+   +kI+++i+k c      ++ ++e+++ +v++ ++     g++t e+++l ++t++    +h+d++++aa+i  ++l+k+
  MMETSP0890-20130614|21030_1  26 MYVVKRDGRHEEVHFDKITSRIKKLC-YGLDLKYLSPERITVKVIQGVYP----GVTTIELDELAAQTAAymatQHPDFSLLAARISISNLHKQ 114
                  79************************.444567999**************....**************************************95 PP

>> PF13597.1  Anaerobic ribonucleoside-triphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.8e-05      0.05     283     378 ..     469     566 ..     407     582 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.8e-05
    PF13597.1 283 igvvtiNlprlaleakgeeekfeelkkldlak...rklieeliekgllpflkqylkelknhfltiGviGlnEalanlgekdieseeakklalevldlir 378
                   +  +iNl  +++e  + ++ f++ +kl+ +     + ++++i+ + +p+ +++ ++++++   iGv Gl+ +   l  +  es++a++l  ++ ++i+
  MMETSP0890-20130614|21030_1 469 CNLASINLTAMVQEDTNTNNLFFDFDKLRHISgvvCRNLNKVIDINYYPVEEAKNSNFRHRPIGIGVQGLADTFIKLRMP-YESQQARDLNRDIFETIY 566
                  67899************999999998887764334667788999****************************99877766.578888888888888876 PP

>> PF01475.14  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.32   8.6e+02      26      46 ..     142     162 ..     134     164 .. 0.89
   2 ?    9.5   0.0   0.00028      0.77      62     105 ..     483     526 ..     470     533 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.32
                  HHHHHHHHHHTSTT--HHHHH CS
   PF01475.14  26 aeevykelkeedpeislaTVY 46 
                   +++y+ ++e++++i  + VY
  MMETSP0890-20130614|21030_1 142 SKDLYEIVMENKEKINSSLVY 162
                  589***************999 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00028
                  E-S---EEEEES-SSSEEEEEES----EEEE--HHHHHHHHHHH CS
   PF01475.14  62 efedgesryelakkehhdhlicekCgkviefkddeiekiqeeia 105
                  ++++++  +++ k  h+  ++c++ +kvi+++   +e+ +++  
  MMETSP0890-20130614|21030_1 483 DTNTNNLFFDFDKLRHISGVVCRNLNKVIDINYYPVEEAKNSNF 526
                  45678889**************************9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.40s 00:00:01.61 Elapsed: 00:00:00.94
# Mc/sec: 2067.50
//
Query:       MMETSP0890-20130614|21031_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-17   62.8   2.7    3.3e-17   62.5   1.9    1.1  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.12   11.1   0.1       0.16   10.7   0.1    1.1  1  PF00913.14 Trypanosome variant surface glycoprotein (A-type)
       0.23   10.4   1.9        0.3   10.0   1.3    1.1  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   1.9   7.3e-21   3.3e-17       1      87 [.      38     122 ..      38     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 7.3e-21
   PF00428.14   1 eptaadikavlkaagveveaerlkllvkalegkdikeliangsaklaaaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                  e++a++ik++l a g evea+++ l +k+l+gk ++eli +++a  ++ ++ + +++aa+++ +aa ee+k+eeeeEee+ dmG+g+
  MMETSP0890-20130614|21031_1  38 EVNADQIKSLLTATGNEVEAYWPILYAKFLKGK-VDELIFSVGAG-SGGGGGGDSGGAAGGEGEAAVEEEKKEEEEEEEEIDMGGGM 122
                  689****************************98.89999999888.47778888888888888888888888877678888***874 PP

>> PF00913.14  Trypanosome variant surface glycoprotein (A-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.4e-05      0.16      77     168 ..      23     112 ..      14     125 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.4e-05
   PF00913.14  77 eakaaaalaaalrkaaaalasllatlvkkaikaaaa......agylaGridEflnvlaqakgggnggCLansdggaataatetaidgcecklttsevt 168
                  + + +aala++ +  a+  a+++++l +++ + + a      a +l+G +dE +    + +ggg+g   ++s+g a   ++    + +e +++++e++
  MMETSP0890-20130614|21031_1  23 CLTIYAALALY-DGEAEVNADQIKSLLTATGNEVEAywpilyAKFLKGKVDELIFSVGAGSGGGGG---GDSGGAAGGEGE----AAVEEEKKEEEEE 112
                  66778888887.7777777777777777766666644444449**********9999888888888...333333333333....2222222222222 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.3   6.6e-05       0.3     222     246 ..      94     118 ..      81     120 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.6e-05
   PF01056.13 222 sgedseseeeeeeeeeeeeeeeiDv 246
                   g + e   eee++eeeeeeeeiD+
  MMETSP0890-20130614|21031_1  94 AGGEGEAAVEEEKKEEEEEEEEIDM 118
                  55566677899999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.41s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 530.34
//
Query:       MMETSP0890-20130614|21032_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 443.16
//
Query:       MMETSP0890-20130614|21033_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-44  151.8   0.0    1.8e-41  141.3   0.0    2.4  2  PF00270.24 DEAD/DEAH box helicase
    1.4e-21   76.0   0.1    5.4e-21   74.1   0.1    2.0  1  PF00271.26 Helicase conserved C-terminal domain
    3.8e-06   26.7   0.1    5.5e-05   22.9   0.0    2.3  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.13   12.4   0.6         10    6.3   0.3    3.1  3  PF03143.12 Elongation factor Tu C-terminal domain
        7.3    6.3   6.2         18    5.1   4.3    1.7  1  PF09457.5  FIP domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.0   6.7e-45   1.8e-41       1     172 [.     120     296 ..     120     297 .. 0.92
   2 !    8.0   0.0   0.00057       1.6      37     107 ..     349     420 ..     330     443 .. 0.78

  Alignments for each domain:
  == domain 1    score: 141.3 bits;  conditional E-value: 6.7e-45
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H..TTSTS.....EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH..T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk..kttik.....kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl..dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 172
                  t+ Qa ++pl+l g d++ +a+TGsGKTl fl+p++ il++++             ++li+aPtreLa q+  +++kf+  +++r + ++gg ++  +q+++l   +g  ivvgTpgr+ d ++++klnl  +++lVlDEadr+l++gf++q++ i++    g+ +q+++++AT++k+v++
  MMETSP0890-20130614|21033_1 120 TATQAVSWPLALAGLDLISVAKTGSGKTLGFLLPCMHILYTSSRarI---VgpcspRILILAPTRELATQIGAEANKFCGVMDCRSATVYGGAPKW-EQAKQLktLGGKAIVVGTPGRVSDFLQAQKLNLNLLQVLVLDEADRMLDMGFEPQIRAIVEYAPSGTGRQTMLFTATWDKKVQR 296
                  678************************************99765440...255555**************************************77.777788787889********************999********************************************99987 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00057
                  HHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH....T..-SEEEEEH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
   PF00270.24  37 qilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl....dngvdivvgTp 107
                    l++++  +++kk +i + t+  a q ++ l++     +l + +i+g++a+  +++  +    +++ +i+v+T 
  MMETSP0890-20130614|21033_1 349 ASLYDSE-FDNSKKLIIFSATKRGADQLARLLQRSYGR-RLAIDAIHGDKAQH-ERDAAMdsfkRGQLQILVATD 420
                  3444432.357889999999999999999888877765.8*********9955.444444579999*******95 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.1     2e-24   5.4e-21      10      78 .]     389     460 ..     383     460 .. 0.91

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 2e-24
                  EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSS...BSSHHHHHHH------TT CS
   PF00271.26  10 vailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl...prsvtsyiQriGRtgRag 78 
                  + ++hg+  q er++ +++f++g+ ++lvat+va+rG+d+ dv++V ++d+   ++  ++y++riGRtgRag
  MMETSP0890-20130614|21033_1 389 IDAIHGDKAQHERDAAMDSFKRGQLQILVATDVAARGLDISDVSHVLILDFpdgSKGIEDYVHRIGRTGRAG 460
                  678************************************************555556666**********97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.3      0.33     9e+02      92     125 ..      10      44 ..       1      83 [. 0.55
   2 !   22.9   0.0     2e-08   5.5e-05      31     182 ..     139     290 ..     135     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.33
   PF04851.10  92 klfg.eeqkkskdkeekkkkdkeiilttiqklhka 125
                  k+ + +++++ k+k++ k+ ++e++ t+i++ +  
  MMETSP0890-20130614|21033_1  10 KEAKkQKKEVKKRKKKVKEGEREMVSTSITTSSCI 44 
                  22220333344444444455556666666655544 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2e-08
   PF04851.10  31 vmaTGtGKTlvaa....sliarlar............kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk...yreile.......fkkafllglTATp 182
                  v+ TG+GKTl  +    ++++   +            ++l+l+p++el  q   e     +k++ +      ++    ++g   k ++ k+ k+   k i++ t  +++  l+            ++ +l+  +v++ DEa r+ ++      r+i+e       +     + +TAT+
  MMETSP0890-20130614|21033_1 139 VAKTGSGKTLGFLlpcmHILY---TssrarivgpcspRILILAPTRELATQIGAEA----NKFCGV-----MDCRSATVYGGAPKWEQAKQLKTLGGKAIVVGTPGRVSDFLQA-----------QKLNLNLLQVLVLDEADRMLDMGFepqIRAIVEyapsgtgR---QTMLFTATW 290
                  678*******98855543333...233599999********************998....333333.....4566667899999999999999******************874...........788899999*********99999877777888877774332...448899997 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3    0.0038        10      39      77 ..      10      48 ..       2      78 .. 0.73
   2 ?    1.0   0.0      0.16   4.5e+02      22      43 ..     191     212 ..     173     234 .. 0.77
   3 ?    0.7   0.0      0.21   5.7e+02      23      70 ..     279     327 ..     249     334 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0038
   PF03143.12 39 kivellkkldsekkefvkpGdnvkvevelikpiavekgk 77
                 k ++ +kk  +++k+ vk+G++ +v+ +++++ ++e+++
  MMETSP0890-20130614|21033_1 10 KEAKKQKKEVKKRKKKVKEGEREMVSTSITTSSCIETEN 48
                 33444333337777**********************976 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.16
   PF03143.12  22 kagYrpvlyvrTadvtgkivel 43 
                  +++++ v+++r+a v g   + 
  MMETSP0890-20130614|21033_1 191 ANKFCGVMDCRSATVYGGAPKW 212
                  4789*********998855554 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.21
   PF03143.12  23 agYrpvlyvrTadvtgkivellkkld.sekkefvkpGdnvkvevelikp 70 
                  +g + +l+  T+d +++ v  + + + ++k   v  Gd+ + ++  +k+
  MMETSP0890-20130614|21033_1 279 TGRQTMLFTATWDKKVQRVANDFTRSgNDKLATVHFGDALSGKLVANKD 327
                  5667889999999999777663333334444888888888777776665 PP

>> PF09457.5  FIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.3    0.0066        18       1      25 [.       4      28 ..       4      30 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0066
                 THHHHHHHHHHHHHHHHHHHHHHHH CS
    PF09457.5  1 srdeLislllkqEeelsrkdehvkE 25
                 ++de  ++++kq++e+++++++vkE
  MMETSP0890-20130614|21033_1  4 TKDENLKEAKKQKKEVKKRKKKVKE 28
                 6788899*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1287  (0.094134); expected 273.4 (0.02)
Passed bias filter:                      709  (0.0518578); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.12u 0.45s 00:00:01.57 Elapsed: 00:00:01.12
# Mc/sec: 1134.56
//
Query:       MMETSP0890-20130614|21034_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-10   39.8   8.6    2.5e-07   30.1   1.9    2.7  2  PF05739.14 SNARE domain
     0.0017   18.2   1.7     0.0048   16.8   1.2    1.8  1  PF12352.3  Snare region anchored in the vesicle membrane C-terminus
  ------ inclusion threshold ------
      0.035   14.1   0.0      0.095   12.8   0.0    1.8  1  PF00169.24 PH domain
      0.041   12.9   1.8        3.6    6.5   0.0    2.1  2  PF04582.7  Reovirus sigma C capsid protein
       0.13   11.8   0.5       0.48   10.0   0.3    2.0  1  PF03908.8  Sec20
       0.31    8.7  12.0       0.37    8.4   7.5    1.6  2  PF01496.14 V-type ATPase 116kDa subunit family
       0.34   10.5   7.0        1.5    8.5   1.7    2.7  2  PF07889.7  Protein of unknown function (DUF1664)
       0.44   10.6  12.7       0.62   10.1   1.2    3.1  3  PF03670.8  Uncharacterised protein family (UPF0184)
       0.46    9.9   0.0       0.46    9.9   0.0    2.9  3  PF08651.5  DASH complex subunit Duo1
       0.58    9.6   7.4        1.2    8.5   5.1    1.5  1  PF04156.9  IncA protein
       0.74    9.3   4.8        1.9    8.0   1.1    2.2  2  PF04136.10 Sec34-like family
        1.7    8.2   6.6       0.64    9.5   1.4    2.6  2  PF00957.16 Synaptobrevin
        2.1    8.0  14.5        1.5    8.5   0.2    3.0  3  PF06009.7  Laminin Domain II


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   1.9   2.3e-10   2.5e-07       4      59 ..     188     243 ..     185     245 .. 0.95
   2 !   12.4   0.2   8.3e-05     0.087       4      61 ..     329     386 ..     326     388 .] 0.91

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.3e-10
                  HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14   4 eeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkal 59 
                  ++++++ +++ +  ql+   ge +++Qge+ld I+++ ++ +++v+ra k++++++
  MMETSP0890-20130614|21034_1 188 NAVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLE 243
                  6899***********************************************99886 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 8.3e-05
                  HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14   4 eeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalry 61 
                   +l+++ s++  L++ +  +g+   +++e ++ + +n+++ass v + n+r+++ +ry
  MMETSP0890-20130614|21034_1 329 AGLDDIDSMLDSLGDAARSLGDKTRAHNEKINLMTQNMDDASSGVAKINERASYNVRY 386
                  6899*****************************************9999998877666 PP

>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.2   4.5e-06    0.0048       4      56 ..     184     236 ..     181     241 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 4.5e-06
    PF12352.3   4 lresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksn 56 
                  +++++ + + + ++d+t + +a + e+L++Q e+L  +++ l  ++ ++++++
  MMETSP0890-20130614|21034_1 184 NQTMNAVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTNVDRAD 236
                  578888999999************************************99976 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-05     0.095       2     103 ..       7     118 ..       6     119 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9e-05
                  SBEEEEEEEE.......TSSSCEEEEEEEEET..TEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT.....CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   2 ikeGyllkks.......ellktwkkryfvLts..nyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv.....esyllsaeseeerkrWvqalknll 103
                  +++G+llk         ++ + w++r fvL    + L+y+++ +   +k  kg   l +  +k + ++     + ++++fe++         + ++l a ++ e+++W+ +++  +
  MMETSP0890-20130614|21034_1   7 VRQGTLLKLPrgkpsifRSSSPWQERDFVLDIgkGTLSYYQKGQAGIRKGFKGELRLAGGLIKACGEPV----SGQKYVFELNECVDedggiQPLKLAAATQGEMEAWIVSIRATM 118
                  6899999999999999999************988**********999*************9*9999996....99*******98888899999*****************999765 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0034       3.6      47     104 ..     186     243 ..     169     259 .. 0.82
   2 ?    5.7   0.2     0.006       6.3      67     136 ..     312     381 ..     281     387 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0034
    PF04582.7  47 lsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladls 104
                    ++v+ i ++l d +     + ++ld+   +l+ ++ ++ +l++ vd    + ++l 
  MMETSP0890-20130614|21034_1 186 TMNAVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLE 243
                  4567888888888888777778889999999999999999999999999988888876 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.006
    PF04582.7  67 dvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvs 136
                  +   +ld +  + +++++ +  + s +dsl     +l + + ah++ +  + +++d  s+ ++ ++   s
  MMETSP0890-20130614|21034_1 312 EEQATLDTIARNDDQINAGLDDIDSMLDSLGDAARSLGDKTRAHNEKINLMTQNMDDASSGVAKINERAS 381
                  4456777777788888888888888888888888888888888988888888888888888877776555 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00046      0.48       4      62 ..     184     242 ..     181     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00046
    PF03908.8   4 kqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkkl 62 
                  +q  +++ +i+++l ++ q  + + e+ld++ ++l ++++++ ++++ + r+ k  ++l
  MMETSP0890-20130614|21034_1 184 NQTMNAVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTNVDRADKNFNQL 242
                  566788899*************************************9999887766555 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.5   0.00035      0.37      16     143 ..     159     285 ..     156     324 .. 0.86
   2 ?   -1.1   0.0      0.27   2.8e+02      68     117 ..     323     372 ..     294     385 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00035
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX CS
   PF01496.14  16 nedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglkl 143
                  n+d++++ r++  +  +++ev+ +  + ++ + ++k++l d+++   +  + ++++  e+l+ ++ +l++++++ ++ +k++n+le++r +    k+   +++++e +++++ + +f+a r+a+ ++ 
  MMETSP0890-20130614|21034_1 159 NQDIDEQMRQQHAQKIDAEEVYAMQNQTMNAVGRIKAQLDDTQQLAATTGE-TLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLEKWRIFGGHSKKRGAKAAKQEREKVEKQNAKFEAQREAKTTNF 285
                  889999999999999************************977766666666.8**************************************9999999999888888899999999988887776665 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.27
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  68 evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleen 117
                  + +++++ l+++ + l+++ +  +sL  +++  +e+ n+++++ ++ ++ 
  MMETSP0890-20130614|21034_1 323 NDDQINAGLDDIDSMLDSLGDAARSLGDKTRAHNEKINLMTQNMDDASSG 372
                  55667777777777777777777777777777777777777776666554 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.7    0.0014       1.5      58     124 ..     178     244 ..     155     246 .. 0.85
   2 ?    3.6   0.1     0.046        48      70     107 ..     331     368 ..     297     383 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0014
    PF07889.7  58 avasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesles 124
                  +v + + +  + + ++  +ld++++++ ++ e + +  e+l+ai++d+++l++ v   ++  ++le+
  MMETSP0890-20130614|21034_1 178 EVYAMQNQTMNAVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLEK 244
                  5566666666778889999********************************9999999999998886 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.046
    PF07889.7  70 idnlddkldeqkeiskeikeevteiredlsaikedvks 107
                  +d +d+ ld   + +++  ++    +e+++ + ++++ 
  MMETSP0890-20130614|21034_1 331 LDDIDSMLDSLGDAARSLGDKTRAHNEKINLMTQNMDD 368
                  33333333333333333333333333333333333333 PP

>> PF03670.8  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.9     3e+03      19      33 ..     170     184 ..     155     205 .. 0.50
   2 ?    5.9   1.5     0.012        13      18      47 ..     208     237 ..     194     244 .. 0.75
   3 ?   10.1   1.2   0.00059      0.62       5      51 ..     297     347 ..     293     377 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.9
    PF03670.8  19 eedefgeeEyeains 33 
                    ++++ eE+ a+ +
  MMETSP0890-20130614|21034_1 170 HAQKIDAEEVYAMQN 184
                  445555555444422 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.012
    PF03670.8  18 teedefgeeEyeainsmLDqinsaLDalEe 47 
                  +e  + + e ++ain+ LD++n+ +D  ++
  MMETSP0890-20130614|21034_1 208 GETLDQQGEQLDAINDDLDKLNTNVDRADK 237
                  455555667899**********99998765 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00059
    PF03670.8   5 ngddnisvedgaeteedefgeeEy....eainsmLDqinsaLDalEernDd 51 
                    + n++++  +  +e+++ ++ +    ++in  LD i+s+LD l +   +
  MMETSP0890-20130614|21034_1 297 IAHRNVTSGLQGRDDEEQATLDTIarndDQINAGLDDIDSMLDSLGDAARS 347
                  566666666666666666555443111145777777777777776554444 PP

>> PF08651.5  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4       2.3   2.5e+03      34      61 ..     176     203 ..     160     206 .. 0.61
   2 ?    9.9   0.0   0.00044      0.46       2      35 ..     210     243 ..     209     245 .. 0.92
   3 ?   -0.6   0.1      0.83   8.7e+02      13      37 ..     355     379 ..     347     384 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.3
    PF08651.5  34 vqetvkstntlLdtWirIlsQteytqrL 61 
                   +e+    n+ ++   rI +Q + tq+L
  MMETSP0890-20130614|21034_1 176 AEEVYAMQNQTMNAVGRIKAQLDDTQQL 203
                  5566666677777777777777777776 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00044
    PF08651.5   2 aLlkeleqLrkinevienlieslkaakgniekvq 35 
                  +L ++ eqL++in+ + +l+ ++++a +n ++++
  MMETSP0890-20130614|21034_1 210 TLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLE 243
                  689999***********************99976 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.83
    PF08651.5  13 inevienlieslkaakgniekvqet 37 
                   ne i+ +++++++a + + k++e+
  MMETSP0890-20130614|21034_1 355 HNEKINLMTQNMDDASSGVAKINER 379
                  5777888888888888888888876 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.1    0.0012       1.2      69     172 ..     155     279 ..     127     285 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0012
    PF04156.9  69 eedekieesrlqeelsesesqlsele.eeleqleerlaeleseledleedlellq...........eelksleerlesleesikelakeirelr..............eeisdlkeevqelrselerlqe 172
                  ++ ++++      + +  +++ ++++ ee+ +++++     ++++++ +d ++l            e+l + ++ l++l+ +++++ k + +l+              ++ ++++e+v+++    e+ +e
  MMETSP0890-20130614|21034_1 155 SRGQNQDI-----DEQMRQQHAQKIDaEEVYAMQNQTMNAVGRIKAQLDDTQQLAattgetldqqgEQLDAINDDLDKLNTNVDRADKNFNQLEkwrifgghskkrgaKAAKQEREKVEKQNAKFEAQRE 279
                  33444444.....55555666666668888889999999999999999999999999999999999999999999999999999999999999999999********98888888888887666555544 PP

>> PF04136.10  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.1    0.0018       1.9       9      80 ..     171     244 ..     162     248 .. 0.80
   2 ?    2.0   0.0      0.13   1.3e+02       6      52 ..     314     360 ..     309     385 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0018
   PF04136.10   9 Lqtlee.eidaiLdqvnsalerLeslkekyefvskkts.elseaceqLlkeqerlselaeeiqkkLsyfaelee 80 
                   q+++  e+ a+ +q+ +a+ r+++  ++ +     t+ +l++  eqL   +  l  l  ++ +  + f++le+
  MMETSP0890-20130614|21034_1 171 AQKIDAeEVYAMQNQTMNAVGRIKAQLDDTQQLAATTGeTLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLEK 244
                  44454348999************997666666666555279*******************************96 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.13
   PF04136.10   6 rdyLqtleeeidaiLdqvnsalerLeslkekyefvskktselseace 52 
                  +  L+t+  + d+i   ++++ + L+sl +   +  +kt + +e  +
  MMETSP0890-20130614|21034_1 314 QATLDTIARNDDQINAGLDDIDSMLDSLGDAARSLGDKTRAHNEKIN 360
                  45667777666666666666777777788888888888877776553 PP

>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.4   0.00061      0.64       4      46 ..     189     231 ..     186     244 .. 0.89
   2 ?   -1.2   0.1       1.3   1.4e+03      16      28 ..     359     371 ..     344     378 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00061
   PF00957.16   4 klskikaevdevkdimkeNidkvlergekldeLvdkteaLqes 46 
                   + +ika++d+++++     + + ++ge+ld ++d  ++L+++
  MMETSP0890-20130614|21034_1 189 AVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTN 231
                  6789*******************************99999987 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.3
   PF00957.16  16 kdimkeNidkvle 28 
                   ++m++N+d++ +
  MMETSP0890-20130614|21034_1 359 INLMTQNMDDASS 371
                  5778888887655 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.3    0.0018       1.9      16      80 ..     180     244 ..     165     248 .. 0.65
   2 ?   -1.7   0.5         2   2.1e+03       2      25 ..     254     277 ..     253     287 .. 0.77
   3 ?    8.5   0.2    0.0014       1.5       5      70 ..     317     382 ..     312     388 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0018
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7  16 lkelegistnventkaklsklngsveetnekvksankavrdarrsvrkleklapqlldkLkklkk 80 
                   +  ++  + v ++ka+l  +++ ++ t e + +  ++++  ++   kl++++++  + +++l+k
  MMETSP0890-20130614|21034_1 180 YAMQNQTMNAVGRIKAQLDDTQQLAATTGETLDQQGEQLDAINDDLDKLNTNVDRADKNFNQLEK 244
                  44445555566777777777777777777777777777777777777777777666555555554 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2
                  XXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7   2 kelakeAnetakeVlkelegistn 25 
                  k  ak+A++  ++V+k+ +  +++
  MMETSP0890-20130614|21034_1 254 KRGAKAAKQEREKVEKQNAKFEAQ 277
                  678889999999999988776655 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0014
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7   5 akeAnetakeVlkelegistnventkaklsklngsveetnekvksankavrdarrsvrkleklapq 70 
                  ++++     ++ + l +i+  ++ + + + +l ++ +  nek++ +++ ++da++ v k+++ a +
  MMETSP0890-20130614|21034_1 317 LDTIARNDDQINAGLDDIDSMLDSLGDAARSLGDKTRAHNEKINLMTQNMDDASSGVAKINERASY 382
                  566666667788889999999999999999999999999999999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1374  (0.100497); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.84
# Mc/sec: 1106.89
//
Query:       MMETSP0890-20130614|21035_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.33s 00:00:00.76 Elapsed: 00:00:00.88
# Mc/sec: 544.63
//
Query:       MMETSP0890-20130614|21037_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.3   0.0         20    5.0   0.0    2.5  2  PF03454.10 MoeA C-terminal region (domain IV)
       0.35   11.1   0.1       0.35   11.1   0.1    2.1  2  PF13465.1  Zinc-finger double domain
       0.57   10.5   2.4        0.8   10.1   0.1    2.2  2  PF13894.1  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> PF03454.10  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0044        20       2      23 ..     101     122 ..     100     133 .. 0.86
   2 ?    4.8   0.0    0.0053        24      35      54 ..     156     175 ..     135     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0044
                  EEESS--B-----EEEEEEEE- CS
   PF03454.10   2 arlaediksdpgrrefvRvilt 23 
                  a la+di+ +p r+e+ R+ ++
  MMETSP0890-20130614|21037_1 101 AGLADDIRPKPERQEMERCAYS 122
                  789****************988 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0053
                  .------CHHHHC-SEEEEE CS
   PF03454.10  35 gkqgSgllsslaeAnglivi 54 
                  ++ +S+ lssl  ++ l++i
  MMETSP0890-20130614|21037_1 156 SNCDSAFLSSLQLSDHLLEI 175
                  5679**************99 PP

>> PF13465.1  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   0.6         3   1.4e+04       3       7 ..      36      40 ..      35      41 .. 0.77
   2 ?   11.1   0.1   7.7e-05      0.35      12      25 ..     150     163 ..     148     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 3
    PF13465.1  3 rrHlr 7 
                 rrH r
  MMETSP0890-20130614|21037_1 36 RRHER 40
                 79977 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.7e-05
    PF13465.1  12 ekpyeCplCgktFk 25 
                  e py+C++C+ +F 
  MMETSP0890-20130614|21037_1 150 EYPYQCSNCDSAFL 163
                  679*********96 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       0.5   2.3e+03      15      22 ..      34      41 ..      29      43 .. 0.78
   2 ?   10.1   0.1   0.00018       0.8       1      24 []     153     176 ..     153     176 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.5
    PF13894.1 15 eLrrHlak 22
                 ++rrH ++
  MMETSP0890-20130614|21037_1 34 DRRRHERR 41
                 68999886 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00018
    PF13894.1   1 faCplCgktFttreeLrrHlakhH 24 
                  ++C+ C + F +  +L  Hl++ H
  MMETSP0890-20130614|21037_1 153 YQCSNCDSAFLSSLQLSDHLLEIH 176
                  89******************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.88
# Mc/sec: 678.06
//
Query:       MMETSP0890-20130614|21036_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.69
# Mc/sec: 896.03
//
Query:       MMETSP0890-20130614|21040_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-30  106.2   0.0    1.2e-30  105.9   0.0    1.0  1  PF02545.9 Maf-like protein


Domain annotation for each model (and alignments):
>> PF02545.9  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   8.8e-35   1.2e-30       2     192 ..      18     216 ..      17     219 .. 0.94

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 8.8e-35
    PF02545.9   2 eliLaStSprRkelLeklgiefevivsevdEes.vlksldprelvvelakekakakvaelakke....aliiaaDtvvilkgrilgKpktkeeakemlrklsgrehevvTglalikkekneltleteetkvkfkelsdeeieeYvesgep..ldkaGafkiqg.lgalliekieGdyynvvGLplkklvkllkelgllk 192
                  ++iL+S+S  R+ lLe  g +fev+ ++++Ee   ++++dp++lv  +a +ka a +++l  ++     + +++D+vv ++g i +Kp + ++ ++++++ s +    v +++l + +  + +l ++e+ v+fke++d+ i++ +e++ p  l++aG+  i++ l + ++++++G + +++GL  + lv ll el +l 
  MMETSP0890-20130614|21040_1  18 RFILGSSSRSRYLLLEATGADFEVMTPNINEEAiGSRAGDPQALVRLIATAKADALLERLSLENgndnRILLTGDQVVTYDGVIREKPVDLKQCRQFIQSYSRNPCCTVGAICLHSLATGKRVLGVHEAFVHFKEIPDKVIDQLIEQDGPllLQCAGGLMIEHdLIQPFVHEVHGGIDSIMGLCTNLLVDLLDELHNLE 216
                  68***************************9999568999****************9999887778899********************************************************9***********************984459*******862789**************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 941.73
//
Query:       MMETSP0890-20130614|21038_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-20   73.4   0.1    2.7e-20   72.8   0.1    1.3  1  PF00621.15 RhoGEF domain


Domain annotation for each model (and alignments):
>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.1     2e-24   2.7e-20       2     179 ..     308     506 ..     307     507 .. 0.90

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 2e-24
                  HHHHHHHHHHHHHHHHHHHHHTHHHHHHC................TSS-HHHHHHHS..TTHHHHHHHHHHHHHHHHHHHH--...------HHHHHH.HH-HHHHHHHHHCTHHHHHHHHHHHHHH-HHHHHHHH..HHGGG.TT--HHHHCTHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00621.15   2 ieElietErsYvrdLevlvevyieplkes...............ksilseeeiksiF..snieeilklhkeflekLeerlkek...kdaqkigdvflk.leeflkvYseYisnydkalkllkelskknskfkkflkeceespecskldLeslLikPvqRlprYplLLkellkqtpedhpdyedlekaleaikevasqiN 179
                  + El++tE +Y  +L   ve++ +pl++                 ++ +++ +++ F     e++l++++e+l+kLe+r+++    +  + igd+f +  e+++++  ++   +++a   l++l  k+ ++++f + + ++p+c+  +++slLi P qRl+r  l+L++l+k+t + ++d   + +a ++ +e ++ +N
  MMETSP0890-20130614|21038_1 308 LDELYTTECTYRDQLACFVEKLQRPLNKYcecleneatrlgnpqDKLEHAAALRKSFapLPAEQLLEISQELLNKLEQRQQHAsdySGCYPIGDLFASiSEKMKNAMITWYDWHERADVELRRLAPKSIEVAAFAELAASDPRCGDHQVSSLLIAPTQRLVRQMLFLERLAKTTIRANQDCAYIIQAYTSWRETLEACN 506
                  68************************9889999999998888866666677799999444679***************98666445555669****998899999**********************999******9999**********************************99999**********9999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.45s 00:00:01.68 Elapsed: 00:00:00.93
# Mc/sec: 2179.91
//
Query:       MMETSP0890-20130614|21042_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   11.9   0.1      0.036   11.9   0.1    1.1  1  PF02724.9  CDC45-like protein
      0.089   11.5   5.9       0.14   10.9   4.1    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
       0.65    9.9   7.3       0.89    9.5   5.1    1.1  1  PF09805.4  Nucleolar protein 12 (25kDa)
       0.77    7.4   4.4        0.9    7.2   3.1    1.0  1  PF05642.6  Sporozoite P67 surface antigen
        3.3    7.9  12.1        4.7    7.4   8.4    1.3  1  PF00257.14 Dehydrin


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.3e-05     0.036     105     184 ..      17      98 ..       3     209 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
    PF02724.9 105 gdieeelekeeeerdayealvemkeeee........eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnes 184
                  +++ee ++  + e + y a++e+    e        +++   +  e+ ++ ++ s+s++ +s +++d +++d +e+  e++++r  ++
  MMETSP0890-20130614|21042_1  17 QRQEERIQLRGGETHGYGAREED----EeppsvallSTQTGLQ--ENTTSTTQRSNSSSTNSGESDDADQSDGQEQAAENSPRRGARR 98 
                  22222333333333333333222....2345677443333333..3333333333333334444444444444444444444444442 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.1   5.1e-05      0.14     152     266 ..       5     119 ..       3     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.1e-05
    PF14362.1 152 deaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaelean.krkaaleeeraakvaeeqaansandGllaRleAlgeltkedpsallahlfl 266
                  ++++++ +++++++q+e    +g + +G+G + +  +    a+    + l+++ +++ ++ +++ +++++ +++++++ +e++a+ns  +G + R++Al +l++ +  a l++l+l
  MMETSP0890-20130614|21042_1   5 HSQEQQQDQQQQQRQEERIQLRGGETHGYGAREEDEEPPSVALLSTQTGLQENTTSTTQRSNSSsTNSGESDDADQSDGQEQAAENSPRRG-ARRTRALLRLLNVSDPAMLFYLAL 119
                  567788888888888888888999*****************************99999999944444444444444444444455577777.9**********9999998888877 PP

>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.1   0.00032      0.89      37     119 ..       5      86 ..       3     106 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00032
    PF09805.4  37 kAqeeakekereerieerkkiReerkkelekqlkefkealkeleeeeddeeeeeeekeeeeeed.ewegfnedeeeeeteeeed 119
                  + qe+ + +++++r eer ++R  + + +  + ++ ++    l + +++ +e+++++++ ++++   +g +  ++ ++ + +e+
  MMETSP0890-20130614|21042_1   5 HSQEQQQDQQQQQRQEERIQLRGGETHGYGAREEDEEPPSVALLSTQTGLQENTTSTTQRSNSSsTNSGES--DDADQSDGQEQ 86 
                  6899******************9999988888888877777777777888888887777777663344444..22222222222 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.1   0.00033       0.9     239     309 ..       4      95 ..       1     111 [. 0.68

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00033
    PF05642.6 239 nssseGeedddeeeeeenksie.................pgvGvpGvrvgaatssssttspssstttttpassg.psaqgsh...gsssrna 309
                  n s+e ++d+++++ +e+++                   p v +   + g    ++stt+ s s++t    s     ++g +    +s+r +
  MMETSP0890-20130614|21042_1   4 NHSQEQQQDQQQQQRQEERIQLrggethgygareedeepPSVALLSTQTGLQENTTSTTQRSNSSSTNSGESDDaDQSDGQEqaaENSPRRG 95 
                  55666665555555555554447999999999999999999999999999999999999999988887777766233333320103344444 PP

>> PF00257.14  Dehydrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.4    0.0017       4.7      10      85 ..       5      79 ..       1      97 [. 0.55

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
   PF00257.14 10 plpgggeeeekegkekgetgtvkpggeatggkygeqghgevtgeqlqgtreheklggllrrsgsssssssseddgq 85
                 + + +++++++++ +++     + +++  g+ +++++  + +    ++t+ +e++ ++ +rs+sss++s++ dd  
  MMETSP0890-20130614|21042_1  5 HSQEQQQDQQQQQRQEERIQLRGGETHGYGAREEDEE-PPSVALLSTQTGLQENTTSTTQRSNSSSTNSGESDDAD 79
                 3343444444333333332222222222233333333.233333444555599999*******8888887777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       866  (0.0633411); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 768.98
//
Query:       MMETSP0890-20130614|21044_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-162  540.1   0.0   6.6e-161  536.3   0.0    1.9  1  PF05091.7 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)


Domain annotation for each model (and alignments):
>> PF05091.7  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  536.3   0.0  4.8e-165  6.6e-161       5     516 .]       7     550 ..       3     550 .. 0.87

  Alignments for each domain:
  == domain 1    score: 536.3 bits;  conditional E-value: 4.8e-165
    PF05091.7   5 lpelnvnedgWGPpeeeeetknlldvpfapfsKgdklgkvaDwtkstaq............kkqaseagksssvfayv.aaedessFqlVdkaketklekkkrrgkqrtaqarnqkaqeeegeetskkakrgaqrkqkrlqkkrgkrlgararg...qrlreasveikpdwevleeidfseLsklslsekkevediksyGkleyYdksydrvsvknerpLeelkdrevynvttsdDpvirelaeeeeatvfaTDeiLallmcatrSvysWdivitkkgnklffdKrdgseidlltVnEtaaeppsed.........................eenkinspssLalEAtkinqnFaqqvllenekkvqfdeenpfkeeeee......lasvaYrYRkfdLsdeeekpvelivRcevdavlknasgedqfvtikaLnEfdskaqg.vdWrkkLetqrGavlatElknNsnklarWtaqalLagadqlkLGfvsranprdaekHviLgvqtykpkdlAaqinlklsnaWgivrtivdlvmkqedgkyvllKdpnkpvirlyev 516
                   p+++ n+ gWGP  ++  ++   d+p+apf +gd+lg+ aD+t+  +             +  +   +++++ f+y+ +a +++sF+lVdk+ ++k+    ++g     ++ ++++ + + ++++++ ++g+ ++  ++  +rg+ +g+ +r    +  r++sv+i +dw+++e++d ++L+kls  + ++ ed+ + G+l +Y+  +dr s+k+++pL+++++ e+y vtt+dDp +++ a+e++a v+ TD+iL+llm+ +rSvy+Wdiv++k+++ l+fdKrd++ +d+ltV+Et+ epp+e+                         +  +insps+L++EAt inqnF+qq+l ++  + +++ +npf +++++      +a vaYrYRkf+L+d+     +li R+e+++  + ++ge+ ++t  aLnE+ds+  g +dWr+k+++qrGavlatElknNs+klarWtaq++Lagadq+k+G+vsr++  ++  H iL++q ykpk++A+qi+l+++n+Wgi+++++dl+ ++edgk+v+++d+nkp++r+++v
  MMETSP0890-20130614|21044_1   7 MPVVHHNAGGWGPLPSNLPQQ-FVDMPYAPFGRGDRLGRSADFTQLNQYrreaaenrkyrgRGDV--ENQKNEEFQYKfDAVEDQSFHLVDKVSQKKT-SGFQQG----FKRSYRGRGRGR-GNFNNSGRSGQTYRGGQQGGQRGRGTGRDKRDtnpKIDRQSSVKIGADWTLIEQFDLAQLTKLST-KIPDAEDLVWAGELAIYNDIFDRCSTKHPIPLQRMDNAEFYYVTTTDDPAMEKFAKENAADVYGTDAILSLLMASPRSVYPWDIVVQKIDGALVFDKRDTATFDFLTVSETSHEPPTEApglyeddrlspeqlavqraaqskdpKLMEINSPSKLSIEATMINQNFSQQILRSDLPRNKLELPNPFATTDNTensgpqPAAVAYRYRKFKLGDR-----TLISRTELHGIAE-KRGEKLYMTAYALNEWDSRLAGgIDWRQKIDSQRGAVLATELKNNSCKLARWTAQSVLAGADQMKIGYVSRVSRANPYDHLILATQFYKPKEFANQITLNINNMWGIMKMLIDLLFSKEDGKFVIVRDANKPIVRIFSV 550
                  68999*********9988765.67*******************9744446888887655431112..222233333324999*********9999953.333333....334444444444.3344444444444433333323333222222244456***************************5.9**********************************99**********************************************************************************99999999999999988888776555679**************************************998888899******************8.....***********76.89***************************************************************************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:00.80
# Mc/sec: 1734.36
//
Query:       MMETSP0890-20130614|21048_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   53.4   0.1    1.3e-12   47.0   0.0    2.0  2  PF13374.1  Tetratricopeptide repeat
    1.3e-11   44.1   0.0    2.8e-11   43.0   0.0    1.4  1  PF13424.1  Tetratricopeptide repeat
    4.1e-05   22.9   0.0      5e-05   22.6   0.0    1.1  1  PF13176.1  Tetratricopeptide repeat
    0.00017   20.9   0.3    0.00022   20.5   0.2    1.2  1  PF00515.23 Tetratricopeptide repeat
    0.00092   18.7   0.0     0.0011   18.4   0.0    1.2  1  PF13414.1  TPR repeat
      0.002   17.7   0.1     0.0036   16.9   0.1    1.5  2  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.6   0.2      0.043   13.9   0.0    1.5  2  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.012        23      36      42 .]       4      10 ..       1      10 [. 0.85
   2 !   47.0   0.0   6.8e-16   1.3e-12       1      42 []      11      52 ..      11      52 .. 0.98

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.012
    PF13374.1 36 lGddHPd 42
                 lG++HPd
  MMETSP0890-20130614|21048_1  4 LGPNHPD 10
                 5*****8 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 6.8e-16
    PF13374.1  1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                 +aa+lnn+A   + +g+y+eA +l e a +i+++++G +HP+
  MMETSP0890-20130614|21048_1 11 VAASLNNIAQSWCYQGKYDEAKPLNEHAIEIWEKVHGSNHPQ 52
                 8****************************************5 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.4e-14   2.8e-11      36      78 .]       2      44 ..       1      44 [. 0.95

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.4e-14
    PF13424.1 36 relgddhpdtaralnnlanlylalgdydeAleylekAleiaek 78
                 + lg++hpd+a +lnn+a+ + ++g+ydeA+++ e A+ei ek
  MMETSP0890-20130614|21048_1  2 ENLGPNHPDVAASLNNIAQSWCYQGKYDEAKPLNEHAIEIWEK 44
                 689************************************9876 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.5e-08     5e-05       1      31 [.      14      44 ..      14      49 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.5e-08
    PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkd 31
                 +l+n+a+ ++ +g+y++A  l+e a+++++ 
  MMETSP0890-20130614|21048_1 14 SLNNIAQSWCYQGKYDEAKPLNEHAIEIWEK 44
                 79**********************8887765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.1e-07   0.00022       1      30 [.      12      41 ..      12      44 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALel 30
                 a +l+n+++   ++gkydeA    e A+e+
  MMETSP0890-20130614|21048_1 12 AASLNNIAQSWCYQGKYDEAKPLNEHAIEI 41
                 6789************************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.7e-07    0.0011       2      33 ..      11      42 ..       3      53 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.7e-07
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld 33
                 +A +l++ ++   ++g+ydeA  + e+A+e++
  MMETSP0890-20130614|21048_1 11 VAASLNNIAQSWCYQGKYDEAKPLNEHAIEIW 42
                 46666666666666666666666666666665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.9e-06    0.0036       1      23 [.      12      34 ..      12      41 .. 0.82
   2 ?   -1.6   0.0       1.6   3.1e+03      18      26 ..      36      44 ..      35      45 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHHHTT-HHHHHHH CS
   PF07719.12  1 aealynlGlayyklgdyeeAlea 23
                 a  l+n+++++ ++g+y+eA+ +
  MMETSP0890-20130614|21048_1 12 AASLNNIAQSWCYQGKYDEAKPL 34
                 5689****************966 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.6
                 HHHHHHHHH CS
   PF07719.12 18 eeAleafek 26
                 e A+e +ek
  MMETSP0890-20130614|21048_1 36 EHAIEIWEK 44
                 568888887 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.043       9      33 ..       8      32 ..       4      33 .. 0.93
   2 ?   -3.0   0.0       5.5   1.1e+04       4       9 ..      37      42 ..      36      44 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-05
    PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                 +P+ a ++nn A+ ++ +G+++eA+
  MMETSP0890-20130614|21048_1  8 HPDVAASLNNIAQSWCYQGKYDEAK 32
                 7899*******************97 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.5
    PF13431.1  4 kaleld 9 
                  a+e+ 
  MMETSP0890-20130614|21048_1 37 HAIEIW 42
                 688875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.61
# Mc/sec: 212.14
//
Query:       MMETSP0890-20130614|21046_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-27   95.9   1.7    2.4e-27   95.1   0.2    2.1  2  PF02629.14 CoA binding domain
    3.6e-26   91.5   0.2    5.4e-26   90.8   0.1    1.3  1  PF00549.14 CoA-ligase
    3.3e-09   36.3   0.0    5.4e-09   35.6   0.0    1.3  1  PF13607.1  Succinyl-CoA ligase like flavodoxin domain
    0.00036   20.5   0.0     0.0022   18.0   0.0    2.2  2  PF13380.1  CoA binding domain
  ------ inclusion threshold ------
       0.11   12.8   0.2       0.28   11.6   0.0    1.7  2  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold


Domain annotation for each model (and alignments):
>> PF02629.14  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.2   8.9e-31   2.4e-27       2      96 .]      18     110 ..      17     110 .. 0.98
   2 ?   -1.0   0.1      0.83   2.3e+03       3      39 ..     157     193 ..     155     238 .. 0.74

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 8.9e-31
                  TTEEEEEE-----..TTTHHHHHHHHEEEEEEEES-TTT---B----BEESSHHHHHHHCT-SEEEE-S-HHHHHHHHHHHHH----EEEE-SS- CS
   PF02629.14   2 ketkviviGasglgiqllyhfkellkygikkvfgvnprkvgtevggipvyksvdeleekvdvdvavitvPaeeaqeaidelveagikgiviiteg 96 
                   etkvi++G++g+  q++yh+++ + yg+k+v+gv+p+k+g+ ++++pv+++v+e+++ +++d+++i+vP++++++ai++++ea+i++iv iteg
  MMETSP0890-20130614|21046_1  18 AETKVICQGFTGK--QGTYHSSQAIAYGTKVVGGVTPKKGGQIHLELPVFNTVKEAKDALNPDATMIYVPPPFCKAAILDALEAEIPLIVTITEG 110
                  68***********..******************************************************************************98 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.83
                  TEEEEEE-----..TTTHHHHHHHHEEEEEEEES-TT CS
   PF02629.14   3 etkviviGasglgiqllyhfkellkygikkvfgvnpr 39 
                  +++++v+  sg+ + +++ +  +++ g +  +g++++
  MMETSP0890-20130614|21046_1 157 PGSIGVVSRSGTLTYEAVAQTTKVGLGQSTCVGIGGD 193
                  6677777777777777766666677777666666655 PP

>> PF00549.14  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.1     2e-29   5.4e-26       1     151 [.     163     284 ..     163     286 .. 0.97

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 2e-29
   PF00549.14   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkaikeakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraak 151
                  ++++GtL+yea+ ++++               g +q++++++G+d f+         +t++i++l+k++adp++++i++ +++G g++e++aae++ka+ + +     +pvv ++aGt+a+p++++++a+a+ ++g  +a++k +a +aa+
  MMETSP0890-20130614|21046_1 163 VSRSGTLTYEAVAQTTKV--------------GLGQSTCVGIGGDPFN---------GTNFIDCLEKFTADPQTQGIIMIGEIG-GSAEEEAAEWVKAHGDPN-----KPVVGFIAGTTAPPGRRMGHAGAIVSGGKGTAEAKFAAFEAAG 284
                  689***************..............***************8.........***************************.*************99996.....9**********************************99999886 PP

>> PF13607.1  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     2e-12   5.4e-09       1     133 [.     157     296 ..     157     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2e-12
    PF13607.1   1 pgkvalisqSGalatalldwaaergigfskvvslGn..eadvdvadlldylaedpetkvillylEgirdg.rkflsaarraark.kpvvvlksgrseagaraaashtgala....gsdavydaafrqaGvlrvdsleelfd 133
                  pg+++++s SG+l  + +++ ++ g+g s++v +G      +++ d+l+ + +dp+t+ i++  E  + + ++ ++ +++     kpvv + +g+++   r  + h ga++    g  ++  aaf+ aG+   +s  +l +
  MMETSP0890-20130614|21046_1 157 PGSIGVVSRSGTLTYEAVAQTTKVGLGQSTCVGIGGdpFNGTNFIDCLEKFTADPQTQGIIMIGEIGGSAeEEAAEWVKAHGDPnKPVVGFIAGTTAPPGRR-MGHAGAIVsggkGTAEAKFAAFEAAGIHISRSPSQLGS 296
                  799********************************943459************************88775378888888888778*********97765555.47888886333356777778999999998888887755 PP

>> PF13380.1  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.1e-07    0.0022      27     113 ..      43     140 ..      28     142 .. 0.73
   2 ?   -1.1   0.0      0.66   1.8e+03      82     101 ..     216     238 ..     200     240 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 8.1e-07
    PF13380.1  27 gypvi.pVnpke.eeilg.vkvyaslae..dl.pvdlvsvftppervpavveealalgakavwfqpg.seneeaae....aaeeagirvvgpnCilve 113
                  g +v+  V pk+ ++i+   +v+ +++e  d  ++d+  +++pp  + a++ +al+ ++  ++     + +++++e    + ++++ r++gpnC++++
  MMETSP0890-20130614|21046_1  43 GTKVVgGVTPKKgGQIHLeLPVFNTVKEakDAlNPDATMIYVPPPFCKAAILDALEAEIPLIVTITEgIPQQDMVEvkyhLSRQNKSRLIGPNCPGII 140
                  544444689998888888457999999864337***************9999998888777666555555555544111156669**********996 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.66
    PF13380.1  82 vwfqpg...seneeaaeaaeeag 101
                  +++      s +eeaae+++++g
  MMETSP0890-20130614|21046_1 216 IIMIGEiggSAEEEAAEWVKAHG 238
                  55544444489999999999987 PP

>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.28       7      91 ..      26     105 ..      20     106 .. 0.80
   2 ?   -3.0   0.1       3.4   9.3e+03       4      23 ..     217     237 ..     215     250 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
                  --.--HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHHHHHCTHHCCSSHHHHHHSTT-SEEEE-S-GGGHHHHHHHHHHTT-EEEE CS
   PF01408.17   7 Ga.Gkigsrhlrplnesqrreelvalvdpdperaeavaesfgveaysdleelledpkidavivatpngthadlalaaleagkhvll 91 
                  G+ Gk g+ h  ++ +   ++++v+ v p++  +     +++++++++++e  +  ++da ++ +p+ + ++ +l+alea + +++
  MMETSP0890-20130614|21046_1  26 GFtGKQGTYHSSQAIAY--GTKVVGGVTPKKGGQI----HLELPVFNTVKEAKDALNPDATMIYVPPPFCKAAILDALEAEIPLIV 105
                  55577888887444444..7899999988865444....579999999999999889***********************998775 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
                  EEE--.--HHHHHHHHHHHCH CS
   PF01408.17   4 givGa.Gkigsrhlrplnesq 23 
                   ++G  G  ++++++ + +++
  MMETSP0890-20130614|21046_1 217 IMIGEiGGSAEEEAAEWVKAH 237
                  567766777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 934.28
//
Query:       MMETSP0890-20130614|21047_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-41  141.8   0.0    3.9e-41  140.7   0.0    1.6  1  PF00566.13 Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   2.8e-45   3.9e-41       3     213 ..      86     378 ..      84     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 140.7 bits;  conditional E-value: 2.8e-45
   PF00566.13   3 lRgevWklllgykp...............kvkrlksseekqeeskkqksklekeedske.esqIkkDvpRtfp.......ed......elfkneegqnqLeriLkayaiynpeigYcqGmnfiaallL.................................................lvvldeeeafwcfvsLl...nkklrdlfkpslpglqrdlqileellkkhdpelykhl.ekeeldlslfaikWfltlfvrelpletvlrlwD.lflegakflllrialailkllrkel 213
                   R+++W+ ll+ +                +  +  +se+    + +qk   + e  +++ ++ +++D+ Rt+p       ++      +++ +++g ++L+riL+ay   +pei YcqGmn++aa+lL                                                 l    ee+afw+fv+ l   + +lrdl+k ++ g +r l++++++lk   ++ly+h   k+++ ++++a++W++t+f+ ++p+ +v+r+wD ++++g+k  ++++a+a+l  +++++
  MMETSP0890-20130614|21047_1  86 WRRAIWPELLDLDLgrkrssrdttqkqslRGPKSFRSECAHHGQTYQKLASTGEISRDSiLEVVERDLGRTYPqhrlfesKMidggrvDQHVESRGISSLRRILRAYVALDPEIEYCQGMNYVAAFLLihaaadhfdfdaaqrsindptrairradedsndhlssttrkeqrhnllkLDGSAEEDAFWLFVAALkspRTNLRDLYKLDMIGARRALFVYDKVLKLTASSLYDHVsIKLGIIPDMYATHWLITVFAAQFPYALVTRVWDvFLAQGWKP-VYQVAVALLLAYSDQI 378
                  6999******99779999***9999987733344444444445555555555555555559************98887661156677899999******************************************************************99999999999999988766668888************************************************8799*******************************555599987.*******775555666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.65
# Mc/sec: 1622.15
//
Query:       MMETSP0890-20130614|21053_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.59
# Mc/sec: 727.03
//
Query:       MMETSP0890-20130614|21056_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-28   96.2   0.0      6e-28   96.0   0.0    1.1  1  PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
    2.2e-05   23.6   0.0    6.1e-05   22.2   0.0    1.7  1  PF01193.19 RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> PF13656.1  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   8.7e-32     6e-28       3      77 .]      26      99 ..      24      99 .. 0.96

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 8.7e-32
                 EEEEEES--HHHHHHHHHHHTT-TTEEEEEEESSSTTTSS-EEEEEE---.-HHHHHHHHHHHHHHHHHH---HH CS
    PF13656.1  3 lefeiegeDhTlgnlLreeLlkdpdVefagysvpHpleskivlriqtksgtdpeevlkealedlikvceelkkef 77
                  ++ +++eDhTlgn+Lr++L++++d ef+gysvpHp+es +++r+qt+++ ++ ev++e+l+dl+++c+++k+++
  MMETSP0890-20130614|21056_1 26 RTYLFRDEDHTLGNSLRHVLMNNKDTEFCGYSVPHPSESLVNIRLQTTGK-PADEVMEEGLTDLANICDSIKTQL 99
                 58899*******************************************99.********************9985 PP

>> PF01193.19  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     9e-09   6.1e-05       4      81 ..      29      92 ..      27      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 9e-09
                 EEES--HHHHHHHHHHHCTT-TTEEEEE...-B..S.--EEEEEE--S-EEEEEEEEEEE-----HHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01193.19  4 flegqgitlaNaLRrtLlselpglaita...pvtkvnylieedekkkkpdkekiileietngsitpkealkkAakilidll 81
                 +++ +++tl+N+LR++L+++ +++++++   p                p +  + ++++t+g+ ++ e+++++++ l + +
  MMETSP0890-20130614|21056_1 29 LFRDEDHTLGNSLRHVLMNN-KDTEFCGysvP---------------HPSESLVNIRLQTTGK-PADEVMEEGLTDLANIC 92
                 6789****************.******96442...............45677799*******9.9999*999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.88
# Mc/sec: 304.99
//
Query:       MMETSP0890-20130614|21082_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.30s 00:00:00.62 Elapsed: 00:00:00.65
# Mc/sec: 298.62
//
Query:       MMETSP0890-20130614|21080_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-16   57.9   0.1    1.1e-15   57.3   0.1    1.3  1  PF02576.12 Uncharacterised BCR, YhbC family COG0779


Domain annotation for each model (and alignments):
>> PF02576.12  Uncharacterised BCR, YhbC family COG0779
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   7.8e-20   1.1e-15      12     141 .]     126     255 ..     114     255 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 7.8e-20
   PF02576.12  12 elvdvefkkegrgrvlrvlidk.eegvtlddceevSreisalLda.edpi..seeYtLeVsSPGleRpLkteedfkrfkGekvkvslkeeie..grkefkGklleveeetvvlevkdkrekkevtipladikkarl 141
                  +++d++++       ++v+ d  ++ v+ +d+ +  r+i+++L+   d++   +++ LeVsSPG+ + L  ++df  fkG  ++v + ++i+  +++ ++Gkl+e    ++++++k++     v+ip + + ++rl
  MMETSP0890-20130614|21080_1 126 KVIDIAWDIGT--LRITVTKDDnDNNVSAEDTGRAARSIRDALEPyDDKLrvLDRFELEVSSPGVANVLSMQRDFDTFKGFDIEVDTLNPITpsQSRTLQGKLVERTPIELTINQKGR----IVKIPTNLVGEVRL 255
                  44555555433..4555555655888*****************99855554478************************************963367899*********9***999888....89999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 835.57
//
Query:       MMETSP0890-20130614|21095_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0076   14.7   0.0     0.0078   14.6   0.0    1.0  1  PF03055.10 Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> PF03055.10  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.7e-07    0.0078     336     384 ..      31      79 ..      11      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.7e-07
   PF03055.10 336 rsrlvrfrldlksdtgkvteevlddraalEfPrineryvgrkyryvYla 384
                   ++l+r+ +d  ++  k te +  ++ ++++P++++++ g k ryvY++
  MMETSP0890-20130614|21095_1  31 GPKLHRIIIDNVRSVPKLTEFIKLSEIPTDMPTMHPDRDGYKSRYVYGT 79 
                  5789999999994444544433335559*******************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:01.06
# Mc/sec: 196.68
//
Query:       MMETSP0890-20130614|21103_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-11   42.5  11.9    1.2e-10   41.4   8.3    1.8  1  PF09805.4 Nucleolar protein 12 (25kDa)
  ------ inclusion threshold ------
      0.024   14.4   2.5      0.053   13.3   1.7    1.6  1  PF11764.3 COMPASS (Complex proteins associated with Set1p) component N
        7.3    6.4   7.8        2.1    8.1   0.2    2.5  2  PF12848.2 ABC transporter


Domain annotation for each model (and alignments):
>> PF09805.4  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.3   2.7e-14   1.2e-10      10     101 ..       9     112 ..       1     198 [. 0.75

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 2.7e-14
    PF09805.4  10 veevvFDkekRkeYLtGFhKRKlqRrkkAqeeakekereerieerkkiReerkkelekqlkefkealkeleeeeddeeeeeeekeeeeeed............e 101
                   e  +FD+e+R+e+LtGF+KRK +Rr +  ++ + ker++r++ r   Re  k++++   +  k + k+ ee+ + +  +++e  e+  ++            +
  MMETSP0890-20130614|21103_1   9 EEAGTFDNEAREEWLTGFRKRKRERRLRGLAYGALKERQNRLAARAVRREAIKERIAALPEVPKIQSKLEEEKVQISTFDDQELMEQWGNEvtvtttlgftddD 112
                  55569**************************************9998888888888776655555555555555555555555555555545555333333331 PP

>> PF11764.3  COMPASS (Complex proteins associated with Set1p) component N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.7   1.2e-05     0.053     104     159 ..     128     186 ..     116     207 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
    PF11764.3 104 hrkkvqkaletvqaeekedeka...aake.sasntkakqssRenRannRRlladieaqkl 159
                  h+++ +k+++t + ++ ++       +k   + ++ ak s R +Ra  RR +a+++++ l
  MMETSP0890-20130614|21103_1 128 HEERNEKERQTIDVHQLHAGSLeamCKKLaGKVSSSAKASRRHARARDRRAAAKVGKH-L 186
                  4456666666666555543333775556645556677777789***********9987.4 PP

>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.7     0.084   3.8e+02      48      80 ..      48      81 ..      17      86 .. 0.81
   2 ?    8.1   0.2   0.00046       2.1      17      66 ..     123     172 ..     122     189 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.084
    PF12848.2 48 drfrakaskakqaqsrekalekmeriekp.eeek 80
                 +r++a+a ++ + ++r+ al ++ +i+   eeek
  MMETSP0890-20130614|21103_1 48 NRLAARAVRREAIKERIAALPEVPKIQSKlEEEK 81
                 6888899999999999999999999888854444 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00046
    PF12848.2  17 eyleqkeerleqqekayekqqkeikkleefIdrfrakaskakqaqsreka 66 
                  e++ q eer+e+++++ + +q     le++ ++++ k s++++a  r  +
  MMETSP0890-20130614|21103_1 123 EFIPQHEERNEKERQTIDVHQLHAGSLEAMCKKLAGKVSSSAKASRRHAR 172
                  6999*******************************999777777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.64
# Mc/sec: 846.21
//
Query:       MMETSP0890-20130614|21107_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-07   31.2   0.3    2.8e-07   30.5   0.2    1.4  1  PF01713.16 Smr domain


Domain annotation for each model (and alignments):
>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.2     2e-11   2.8e-07       1      82 [.      76     158 ..      76     159 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2e-11
                  EE-----HHHHHHHHHHHHHHHHHHHH-EEEEE----....---.......HHHHHHHHHHT.THCECCEEEEEE----------EEEEE CS
   PF01713.16   1 lDLHgltveeAlealeefldrarskglrtvliitGkGshseggv.......LkkavkewLde.srkaeevsafreaeprhGgsGalyVll 82 
                  lDLH  ++  A  +l+++ld+a  k + ++  +tG G+h ++g+       L + v ++L++ ++ +        a+ + G++Ga+++++
  MMETSP0890-20130614|21107_1  76 LDLHFQSTRTAPLVLDQVLDEAL-KARGQLWLVTGSGHHVPRGThqlchgvLHSTVLNYLEDnGYDFAI------AKDNAGHAGAFLIYG 158
                  8********************99.6678999******77776666666666*********888888887......899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.76
# Mc/sec: 955.39
//
Query:       MMETSP0890-20130614|21114_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.65
# Mc/sec: 969.60
//
Query:       MMETSP0890-20130614|21134_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-12   45.0   0.0    1.1e-07   31.7   0.0    2.2  2  PF13499.1  EF-hand domain pair
    9.3e-10   36.9   0.0      0.012   14.7   0.0    3.5  3  PF00036.27 EF hand
    9.2e-09   34.3   0.0       0.16   11.8   0.0    3.5  4  PF13405.1  EF-hand domain
    2.5e-08   33.3   0.0     0.0052   16.2   0.0    3.2  3  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   7.4e-05      0.25       7      33 ..      16      42 ..      11      70 .. 0.86
   2 !   31.7   0.0   3.2e-11   1.1e-07       2      63 ..      78     135 ..      77     138 .. 0.96

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.4e-05
    PF13499.1  7 kllDkdgdgyldkeeLlrllkhlgsel 33
                 +++D  + gyl++ e + +l +++  +
  MMETSP0890-20130614|21134_1 16 REFDIENKGYLTQHEVKCYLSCALGFR 42
                 789******************998655 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.2e-11
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                  lk++F+++D  + gyl++e  lr++        ++ + +v+++ f+elD+ ++G +s++ f+
  MMETSP0890-20130614|21134_1  78 LKQIFDAMDLEQRGYLTVESTLRVFETCC----PSIKSDVIRATFQELDLAKTGMISYQQFR 135
                  799****************9999999999....**************************997 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00013      0.46       7      26 ..      16      35 ..      15      37 .. 0.91
   2 !    8.5   0.0   0.00034       1.2       2      20 ..      78      96 ..      77     104 .. 0.90
   3 !   14.7   0.0   3.6e-06     0.012       2      27 ..     114     139 ..     113     141 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00013
                 HHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  7 kefDkDgdGkIsfeEfkeal 26
                 +efD  + G+++  E k +l
  MMETSP0890-20130614|21134_1 16 REFDIENKGYLTQHEVKCYL 35
                 79*************99887 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00034
                 HHHHHHHHCTTTSSEBEHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfe 20
                 lk++F+ +D  + G++++e
  MMETSP0890-20130614|21134_1 78 LKQIFDAMDLEQRGYLTVE 96
                 89**************997 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 3.6e-06
                  HHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                  ++  F+e+D  ++G Is++ f+ ++ 
  MMETSP0890-20130614|21134_1 114 IRATFQELDLAKTGMISYQQFRWIMG 139
                  7899******************9995 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00026      0.89       7      27 ..      16      36 ..      15      40 .. 0.89
   2 ?   -3.2   0.0       3.1   1.1e+04      20      29 ..      46      54 ..      45      56 .. 0.73
   3 !    8.8   0.0   0.00042       1.4       2      23 ..      78      99 ..      77     107 .. 0.85
   4 !   11.8   0.0   4.6e-05      0.16       2      27 ..     114     139 ..     113     147 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
                 GCC-------B---HHHHHHH CS
    PF13405.1  7 klfDkdgdGkidaeELrdaLr 27
                 + fD  ++G+++++E++  L+
  MMETSP0890-20130614|21134_1 16 REFDIENKGYLTQHEVKCYLS 36
                 689*************99887 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.1
                 -HHHHHHH.H CS
    PF13405.1 20 eELrdaLrks 29
                 +EL+ +++ +
  MMETSP0890-20130614|21134_1 46 SELGTVMS-D 54
                 69999998.4 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00042
                 HH---GCC-------B---HHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELr 23
                 l+++F+++D  + G+++ e  +
  MMETSP0890-20130614|21134_1 78 LKQIFDAMDLEQRGYLTVESTL 99
                 789**************98655 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 4.6e-05
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  +r+ F+ +D  ++G i+ +++r ++ 
  MMETSP0890-20130614|21134_1 114 IRATFQELDLAKTGMISYQQFRWIMG 139
                  7999******************9987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00081       2.8      31      46 ..      15      30 ..      15      35 .. 0.88
   2 !   16.2   0.0   1.5e-06    0.0052      15      52 ..      65     103 ..      60     105 .. 0.83
   3 !    6.0   0.0    0.0023         8      23      45 ..     110     132 ..     106     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00081
    PF13833.1 31 frefDtdgdGkisfeE 46
                 +refD++++G++++ E
  MMETSP0890-20130614|21134_1 15 VREFDIENKGYLTQHE 30
                 59**********9987 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.5e-06
    PF13833.1  15 allglkg.lseee.vdilfrefDtdgdGkisfeEFcvlle 52 
                  a + +k+ +++ee +  +f+++D+++ G+++ e  ++++e
  MMETSP0890-20130614|21134_1  65 A-MVKKCaPNDEEfLKQIFDAMDLEQRGYLTVESTLRVFE 103
                  3.3566779***********************99988886 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0023
    PF13833.1  23 seeevdilfrefDtdgdGkisfe 45 
                  + + +++ f e+D+ + G+is+ 
  MMETSP0890-20130614|21134_1 110 KSDVIRATFQELDLAKTGMISYQ 132
                  56779999*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.59
# Mc/sec: 763.58
//
Query:       MMETSP0890-20130614|21142_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-52  176.6   0.0    7.1e-52  176.2   0.0    1.1  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.0   5.2e-56   7.1e-52       8     241 ..      45     283 ..      40     304 .. 0.87

  Alignments for each domain:
  == domain 1    score: 176.2 bits;  conditional E-value: 5.2e-56
                  HHHHHHHHHHHHHHHHCC-HCCHSEEEH..-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHCHHHHC--..B...---.EEEEEEEEE--HHHH------EEEEEEEETTEEEEEEEEETTTTEEEE-------EEE-EEEE----S..-GGG-CCBEE--SSSSSCHHHCCCHHHHCCHHCCHEEEBE-SHHHHHHHHH----SEEEEEE....EEBHHHH----HHHHH---EEEECSS- CS
   PF00459.20   8 aavelaakagevlreafsnslvveekeksgeedlvtaadkaveelilealaakfpgdkilgeetlaage..kselgesgltwvvDPiDGTknFirgipqfavsiglleegkpvlGviaaPllnqlysaakgkGaflngqklkvsrap..ptseallatlfavssvkdtseaellekvlsavsspgvrrvgssalklalvAeGkadayiefg....rekkWDhaAGvaiveeaGGvvtdlkge 241
                  ++++la k+g+++ +a+++++  e k ++g  d++ta+dk  e+l+++ l+++fp+++i+gee+ ++ +  +  ++++ +tw+vDPiDGT nF++g   ++vsigl+ +g+p lGv+++P+l++l+ a++g  afl+g++l + +++  ++s+al++    +++    +  + ++++l+a++++ +r +gs+ l+l+++A+G+a a++       + k+WD++A+ +i + aG++v  ++ +
  MMETSP0890-20130614|21142_1  45 VSISLAYKCGQAIVDAAQAQKETEFKDTDGTLDPCTATDKSNEKLVIKGLRRAFPRHAIIGEESASELGalPGMIKDQ-PTWIVDPIDGTQNFVHGVSLCCVSIGLALNGRPQLGVVYDPFLDELFLAVAG-SAFLDGRELNLDKDSvaTLSDALVLIDPGYERATTSKLIQSYSNLLKAKTRA-IRIIGSTVLSLCWLAAGRASAVLIGLshndSPKPWDFCAATLIAHCAGATVQMIDDR 283
                  58999*************7777776777***********************************999999888888999.**************************************************99.6*****99***99999866777665544444444444445577777777777.9*******************98876457899********************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.65
# Mc/sec: 1249.79
//
Query:       MMETSP0890-20130614|21145_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-23   82.1   0.3    5.2e-23   81.1   0.2    1.5  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
       0.16   11.0   0.0       0.22   10.5   0.0    1.1  1  PF02958.15 Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.2   7.7e-27   5.2e-23       3     189 ..      45     215 ..      43     216 .. 0.94

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 7.7e-27
                  C--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEES.SSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEE CS
   PF00227.21   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieek.navaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevav 189
                  +Gtt+++++ ++ v ++ d  +++gs +++ + ++K+++i d ++++faG++aDa+tl er++++++++        ++         ++++++++++r + +++ l a +   +    ++i+ +G+v+e+   ++ iGsg  +a ++ ++l   d++  +a ++a+kal  a++ + +++ n  +++
  MMETSP0890-20130614|21145_1  45 HGTTILCVRKNGRVAMIGDGMVSMGSITVKHN-AKKVRRIGDGVLVGFAGSTADAFTLLERLERKLEEHP------GQLM--------RAAVDLAKAWRTDKYLRRLEATLLVADHSLTFEITGNGDVLEPSdGVMGIGSGGPYALAAARALK--DIDGLDADTIATKALAIAADMCVYTNHNTIIET 215
                  8***************************5555.8***********************************5......5555........77799999***************9999999*************98999****************9..***************************998876 PP

>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.2e-05      0.22     108     207 ..      25     125 ..      13     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.2e-05
   PF02958.15 108 rlkgldlehlklvlkkLAkfHAaslalkeekpevfkqlkkglleedyvssa..keefeelleellkaalealkeelpelekeaekleklkenlferlaelve 207
                  r   +++  +  +++ ++ +H++++ ++++ +  ++ + +g++++  +  +   ++++++ +++l  ++ + ++++  le+ ++kle+   +l++ +++l++
  MMETSP0890-20130614|21145_1  25 RGGMMNRSYVVSMVRSFGTMHGTTILCVRK-NGRVAMIGDGMVSMGSITVKhnAKKVRRIGDGVLVGFAGSTADAFTLLERLERKLEEHPGQLMRAAVDLAK 125
                  66778999999***************9999.677778888***99876544358999**************************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.92
# Mc/sec: 643.37
//
Query:       MMETSP0890-20130614|21157_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       970  (0.0709479); expected 273.4 (0.02)
Passed bias filter:                      689  (0.050395); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.48s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 539.18
//
Query:       MMETSP0890-20130614|21159_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-07   29.2   0.0    1.8e-06   27.8   0.0    1.6  1  PF03876.12 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397


Domain annotation for each model (and alignments):
>> PF03876.12  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-10   1.8e-06       6      70 .]      38     104 ..      37     104 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.3e-10
                  E-GGGTT.-HHHHHHHHHHCCCCTS--S--.--EEEEE-EETTS-...---------EEEEEEEEEEEE CS
   PF03876.12   6 lePsylgstledallerllekyegkvvpsl.Gvvvaildiaevde...gkvlggsGsvyfrVtfralvF 70 
                  l P+ l+ +++ ++  +ll++ ++++++ + Gv ++ildi +  +   g+++g+++ + ++V+ +a vF
  MMETSP0890-20130614|21159_1  38 LLPHSLE-DVRLHI-FKLLQDSLMRYNERIaGVPISILDIQLAPNhkyGRIFGSDPKIRVTVHLTAHVF 104
                  679****.******.8888999******************99888889********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 792.34
//
Query:       MMETSP0890-20130614|21162_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-71  235.9   0.4    1.8e-13   50.1   0.0    9.2  9  PF13041.1  PPR repeat family
    1.1e-53  175.3   7.9    3.2e-07   29.7   0.1    9.9 10  PF01535.15 PPR repeat
    1.6e-52  171.2   0.5      6e-06   26.0   0.0    9.9 10  PF13812.1  Pentatricopeptide repeat domain
    2.4e-41  138.7   0.0      2e-05   23.8   0.0    9.9 10  PF12854.2  PPR repeat
    6.3e-13   48.8   0.0     0.0074   16.8   0.0    4.3  4  PF13432.1  Tetratricopeptide repeat
    1.3e-11   44.2   0.6    0.00014   21.3   0.0    4.4  3  PF00637.15 Region in Clathrin and VPS
    2.6e-09   36.7   3.9        2.9    8.6   0.0    7.0  6  PF13428.1  Tetratricopeptide repeat
    5.1e-08   32.8   5.5      0.021   14.8   0.0    5.0  5  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    5.4e-07   28.8  15.3       0.78    9.5   0.1    7.7  7  PF13176.1  Tetratricopeptide repeat
    2.4e-06   26.6   8.6      0.048   12.5   0.0    5.1  6  PF13429.1  Tetratricopeptide repeat
    7.8e-06   25.6  12.8      0.068   13.0   0.5    5.6  4  PF13424.1  Tetratricopeptide repeat
    0.00013   21.5  11.9        1.5    8.6   0.1    6.3  6  PF13374.1  Tetratricopeptide repeat
     0.0003   20.2   0.2       0.19   11.1   0.0    3.2  2  PF09205.5  Domain of unknown function (DUF1955)
    0.00033   20.1   5.3        1.3    8.6   0.2    4.7  4  PF13414.1  TPR repeat
    0.00038   19.2   0.5         24    3.5   0.0    5.9  7  PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
    0.00042   20.4  11.7        9.3    6.8   0.1    6.5  6  PF13174.1  Tetratricopeptide repeat
    0.00056   19.1   0.0        4.2    6.6   0.0    4.6  5  PF12921.2  Mitochondrial ATPase expression
      0.002   17.0   0.0        1.2    7.9   0.0    3.6  4  PF10037.4  Mitochondrial 28S ribosomal protein S27
  ------ inclusion threshold ------
      0.017   15.0   0.4       0.96    9.3   0.0    3.6  4  PF12688.2  Tetratrico peptide repeat
      0.029   14.1  13.9         18    5.4   0.1    6.7  6  PF07719.12 Tetratricopeptide repeat
       0.11   12.3   4.3         72    3.3   0.0    5.3  6  PF08542.6  Replication factor C C-terminal domain
       0.18   12.2  10.9        3.8    8.1   0.1    5.4  5  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     2e-10   1.3e-07       8      48 ..      73     113 ..      70     115 .. 0.93
   2 !   31.6   0.0   1.6e-10     1e-07       6      50 .]     106     150 ..     106     150 .. 0.94
   3 !   22.8   0.0   9.8e-08   6.1e-05       1      37 [.     136     173 ..     136     175 .. 0.93
   4 !   48.8   0.0     7e-16   4.4e-13       1      48 [.     172     219 ..     172     221 .. 0.97
   5 !   31.2   0.0   2.2e-10   1.4e-07      10      48 ..     216     254 ..     215     256 .. 0.94
   6 !   18.0   0.0   2.9e-06    0.0018       6      42 ..     247     283 ..     247     283 .. 0.96
   7 !   50.1   0.0   2.9e-16   1.8e-13       2      50 .]     278     326 ..     277     326 .. 0.97
   8 !   26.1   0.0   8.9e-09   5.5e-06       8      48 ..     319     360 ..     319     362 .. 0.95
   9 !   16.3   0.0   9.8e-06    0.0061       8      48 ..     355     396 ..     355     398 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2e-10
    PF13041.1   8 tlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  +++s + + gk e A+++f+e  +rgi+P+vyTYs  i ++
  MMETSP0890-20130614|21162_1  73 MVMSKFRSIGKSERALEVFEEAVQRGIEPDVYTYSAAIAAC 113
                  789999999***************************99997 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 1.6e-10
    PF13041.1   6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                  Y + I ++ + g+++ A+++ +eM+  gi+Pnv++Ys  i  l+k
  MMETSP0890-20130614|21162_1 106 YSAAIAACEQSGDWQRALQIVDEMQGHGIEPNVISYSAAIAVLSK 150
                  8899*********************************99988765 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 9.8e-08
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrg.ikPn 37 
                  pnv++Y + I  l kkg+++ A +++++ +k+g ++P+
  MMETSP0890-20130614|21162_1 136 PNVISYSAAIAVLSKKGQWKRAKCIMDDIRKNGqLEPD 173
                  8*******************************846888 PP

  == domain 4    score: 48.8 bits;  conditional E-value: 7e-16
    PF13041.1   1 pnvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  p+ ++YN+l+s++ k g++++A++l++eM++ +i+P+ +TYs+ i+++
  MMETSP0890-20130614|21162_1 172 PDLIMYNSLMSAYEKDGQWQQALNLLREMREFRIRPDIITYSSAISAC 219
                  7899*******************************************8 PP

  == domain 5    score: 31.2 bits;  conditional E-value: 2.2e-10
    PF13041.1  10 IsglckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                  Is++ k +++e+A++l++e +k g+kPn +TYs  i+++
  MMETSP0890-20130614|21162_1 216 ISACEKGKQWEQALELLEETQKYGLKPNLITYSAAISAC 254
                  88999999******************************8 PP

  == domain 6    score: 18.0 bits;  conditional E-value: 2.9e-06
    PF13041.1   6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYs 42 
                  Y + Is++ k  k+++A+ l++ M+++gik + + Y+
  MMETSP0890-20130614|21162_1 247 YSAAISACEKVQKWQSALILLESMRRSGIKADIIVYN 283
                  8899****************************99997 PP

  == domain 7    score: 50.1 bits;  conditional E-value: 2.9e-16
    PF13041.1   2 nvvtYNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsilikglck 50 
                  ++++YN+ Is+++k+g++eeA+ +++e +  +++Pn +TYsili+++ k
  MMETSP0890-20130614|21162_1 278 DIIVYNAAISACAKAGQLEEALAILDEIQIAEVSPNIITYSILISACVK 326
                  7899******************************************986 PP

  == domain 8    score: 26.1 bits;  conditional E-value: 8.9e-09
    PF13041.1   8 tlIsglckkgkveeAfklfneMk.krgikPnvyTYsilikgl 48 
                  +lIs+++k+g+++ A+ l +e + + +i+P+  TY  li ++
  MMETSP0890-20130614|21162_1 319 ILISACVKAGHWDRALALNEELRtEHQITPDLTTYDALITAC 360
                  69*********************7789*************98 PP

  == domain 9    score: 16.3 bits;  conditional E-value: 9.8e-06
    PF13041.1   8 tlIsglckkgkveeAfklfneMk.krgikPnvyTYsilikgl 48 
                  +lI ++ + +k++  + +f+eMk k  + Pn+  Y+  i+++
  MMETSP0890-20130614|21162_1 355 ALITACTHGKKWDTLMAFFDEMKtKQHLLPNQSIYTAAINAC 396
                  68999999***************666789***********98 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.001      0.63       4      31 .]      72      99 ..      70      99 .. 0.89
   2 !   22.3   0.0   1.2e-07   7.2e-05       1      31 []     104     134 ..     104     134 .. 0.97
   3 !   13.1   0.0   0.00011     0.066       1      30 [.     139     168 ..     139     169 .. 0.96
   4 !   29.7   0.1   5.2e-10   3.2e-07       1      30 [.     175     204 ..     175     205 .. 0.94
   5 !   18.1   0.0   2.6e-06    0.0016       1      30 [.     210     239 ..     210     240 .. 0.94
   6 !   17.0   0.0   5.7e-06    0.0035       1      31 []     245     275 ..     245     275 .. 0.97
   7 !   24.5   0.0   2.4e-08   1.5e-05       2      27 ..     281     306 ..     280     309 .. 0.94
   8 !   20.1   0.0   6.2e-07   0.00039       1      22 [.     315     336 ..     315     343 .. 0.92
   9 !   14.3   0.0   4.1e-05     0.026       2      29 ..     352     379 ..     351     381 .. 0.94
  10 ?   -0.5   0.0       2.3   1.4e+03       2      14 ..     388     400 ..     387     401 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.001
   PF01535.15  4 nslIsgyckaGkleeAlelfkeMkekGv 31
                 + ++s + + Gk e Ale+f+e +++G+
  MMETSP0890-20130614|21162_1 72 TMVMSKFRSIGKSERALEVFEEAVQRGI 99
                 6678889999**************9997 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.2e-07
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +ty++ I ++ ++G+++ Al++ +eM+ +G+
  MMETSP0890-20130614|21162_1 104 YTYSAAIAACEQSGDWQRALQIVDEMQGHGI 134
                  69**************************997 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00011
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekG 30 
                  ++y++ I +++k+G+++ A  ++++++++G
  MMETSP0890-20130614|21162_1 139 ISYSAAIAVLSKKGQWKRAKCIMDDIRKNG 168
                  59*************************998 PP

  == domain 4    score: 29.7 bits;  conditional E-value: 5.2e-10
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekG 30 
                  ++ynsl+s+y k G+++ Al l++eM+e  
  MMETSP0890-20130614|21162_1 175 IMYNSLMSAYEKDGQWQQALNLLREMREFR 204
                  58*************************986 PP

  == domain 5    score: 18.1 bits;  conditional E-value: 2.6e-06
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekG 30 
                  +ty+s Is++ k +++e Alel++e ++ G
  MMETSP0890-20130614|21162_1 210 ITYSSAISACEKGKQWEQALELLEETQKYG 239
                  69***********************99988 PP

  == domain 6    score: 17.0 bits;  conditional E-value: 5.7e-06
   PF01535.15   1 vtynslIsgyckaGkleeAlelfkeMkekGv 31 
                  +ty++ Is++ k  k++ Al l++ M+++G+
  MMETSP0890-20130614|21162_1 245 ITYSAAISACEKVQKWQSALILLESMRRSGI 275
                  69***************************97 PP

  == domain 7    score: 24.5 bits;  conditional E-value: 2.4e-08
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMk 27 
                  +yn+ Is+++kaG+leeAl +++e++
  MMETSP0890-20130614|21162_1 281 VYNAAISACAKAGQLEEALAILDEIQ 306
                  7**********************986 PP

  == domain 8    score: 20.1 bits;  conditional E-value: 6.2e-07
   PF01535.15   1 vtynslIsgyckaGkleeAlel 22 
                  +ty++lIs+++kaG ++ Al l
  MMETSP0890-20130614|21162_1 315 ITYSILISACVKAGHWDRALAL 336
                  69*****************987 PP

  == domain 9    score: 14.3 bits;  conditional E-value: 4.1e-05
   PF01535.15   2 tynslIsgyckaGkleeAlelfkeMkek 29 
                  ty +lI ++ + +k++  + +f+eMk k
  MMETSP0890-20130614|21162_1 352 TYDALITACTHGKKWDTLMAFFDEMKTK 379
                  9************************986 PP

  == domain 10    score: -0.5 bits;  conditional E-value: 2.3
   PF01535.15   2 tynslIsgyckaG 14 
                  +y++ I+++ + G
  MMETSP0890-20130614|21162_1 388 IYTAAINACEHLG 400
                  7*******98777 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0025       1.6       4      34 .]      71     101 ..      68     101 .. 0.93
   2 !   25.7   0.0   1.1e-08   7.1e-06       1      34 []     103     136 ..     103     136 .. 0.97
   3 ?    6.4   0.0     0.018        11       2      31 ..     139     168 ..     138     172 .. 0.82
   4 !   26.0   0.0   9.6e-09     6e-06       3      34 .]     176     207 ..     174     207 .. 0.96
   5 !   16.2   0.0   1.3e-05    0.0081       2      34 .]     210     242 ..     209     242 .. 0.97
   6 !   16.9   0.0   7.7e-06    0.0048       2      33 ..     245     276 ..     244     277 .. 0.95
   7 !   19.8   0.0   9.3e-07   0.00058       3      27 ..     281     305 ..     279     312 .. 0.90
   8 !   20.9   0.0   4.1e-07   0.00026       2      34 .]     315     348 ..     314     348 .. 0.86
   9 !   16.8   0.0   8.3e-06    0.0051       2      31 ..     351     381 ..     350     384 .. 0.88
  10 ?   -0.5   0.0       2.9   1.8e+03       4      20 ..     389     405 ..     387     417 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0025
    PF13812.1   4 yntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  ++ ++  + + g  e+Al+++ee  q+g++P
  MMETSP0890-20130614|21162_1  71 LTMVMSKFRSIGKSERALEVFEEAVQRGIEP 101
                  7899999**********************99 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1.1e-08
    PF13812.1   1 vetyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  v+ty++ i a+  sg++++Al++++eM+ +g++P
  MMETSP0890-20130614|21162_1 103 VYTYSAAIAACEQSGDWQRALQIVDEMQGHGIEP 136
                  68******************************99 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.018
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqg 31 
                  ++y++ i  l+k g++++A  ++++ +++g
  MMETSP0890-20130614|21162_1 139 ISYSAAIAVLSKKGQWKRAKCIMDDIRKNG 168
                  79****************987777777765 PP

  == domain 4    score: 26.0 bits;  conditional E-value: 9.6e-09
    PF13812.1   3 tyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                   yn+l+ a+ k g++++Al ll+eM++ +++P
  MMETSP0890-20130614|21162_1 176 MYNSLMSAYEKDGQWQQALNLLREMREFRIRP 207
                  6*****************************99 PP

  == domain 5    score: 16.2 bits;  conditional E-value: 1.3e-05
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvkP 34 
                  +ty++ i a+ k  ++e+Al+llee +++g+kP
  MMETSP0890-20130614|21162_1 210 ITYSSAISACEKGKQWEQALELLEETQKYGLKP 242
                  69*****************************99 PP

  == domain 6    score: 16.9 bits;  conditional E-value: 7.7e-06
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqqgvk 33 
                  +ty++ i a+ k + +++Al lle M+++g+k
  MMETSP0890-20130614|21162_1 245 ITYSAAISACEKVQKWQSALILLESMRRSGIK 276
                  79****************************98 PP

  == domain 7    score: 19.8 bits;  conditional E-value: 9.3e-07
    PF13812.1   3 tyntlitalaksgrpeaAlalleeM 27 
                   yn+ i a+ak+g+ e+Ala+l+e 
  MMETSP0890-20130614|21162_1 281 VYNAAISACAKAGQLEEALAILDEI 305
                  7*********************996 PP

  == domain 8    score: 20.9 bits;  conditional E-value: 4.1e-07
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeq.qgvkP 34 
                  +ty++li a++k+g++++Alal ee++  ++++P
  MMETSP0890-20130614|21162_1 315 ITYSILISACVKAGHWDRALALNEELRTeHQITP 348
                  69********************999987245666 PP

  == domain 9    score: 16.8 bits;  conditional E-value: 8.3e-06
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeq.qg 31 
                   ty++lita+ +   ++  +a ++eM+  q+
  MMETSP0890-20130614|21162_1 351 TTYDALITACTHGKKWDTLMAFFDEMKTkQH 381
                  69*************************7345 PP

  == domain 10    score: -0.5 bits;  conditional E-value: 2.9
    PF13812.1   4 yntlitalaksgrpeaA 20 
                  y++ i+a+ + g  ++A
  MMETSP0890-20130614|21162_1 389 YTAAINACEHLGLQQRA 405
                  9******9877765555 PP

>> PF12854.2  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.46   2.8e+02      21      32 ..      82      93 ..      81      95 .. 0.87
   2 !   21.2   0.0   2.1e-07   0.00013       1      34 []      97     130 ..      97     130 .. 0.97
   3 !   10.9   0.0   0.00034      0.21       2      31 ..     133     162 ..     132     165 .. 0.89
   4 !   22.7   0.0   7.3e-08   4.5e-05       3      34 .]     170     201 ..     169     201 .. 0.97
   5 !    9.2   0.0    0.0012      0.74       3      32 ..     205     234 ..     203     234 .. 0.88
   6 !    8.7   0.0    0.0017       1.1       2      33 ..     239     270 ..     238     271 .. 0.75
   7 !   21.9   0.0   1.3e-07   7.8e-05       2      32 ..     274     304 ..     273     306 .. 0.96
   8 !   23.8   0.0   3.2e-08     2e-05       3      32 ..     310     339 ..     308     341 .. 0.92
   9 ?    4.5   0.6     0.034        21       3      33 ..     346     376 ..     344     377 .. 0.70
  10 ?   -3.3   0.0       9.6   5.9e+03       3      15 ..     382     394 ..     381     395 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.46
    PF12854.2 21 GrvdeAvellde 32
                 G+ ++A+e+++e
  MMETSP0890-20130614|21162_1 82 GKSERALEVFEE 93
                 67799******9 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 2.1e-07
    PF12854.2   1 kGlkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  +G++Pdv+TY+  I +  ++G+  +A++++deM+
  MMETSP0890-20130614|21162_1  97 RGIEPDVYTYSAAIAACEQSGDWQRALQIVDEMQ 130
                  79*******************************6 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00034
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelld 31 
                  G++P+v++Y+  I  l ++G  ++A  ++d
  MMETSP0890-20130614|21162_1 133 GIEPNVISYSAAIAVLSKKGQWKRAKCIMD 162
                  9*******************9999976666 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 7.3e-08
    PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvelldeMe 34 
                  l+Pd + YN+L +++ ++G   +A+ ll+eM+
  MMETSP0890-20130614|21162_1 170 LEPDLIMYNSLMSAYEKDGQWQQALNLLREMR 201
                  79*****************************7 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.0012
    PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                  ++Pd++TY++ I++  +    ++A+ell+e
  MMETSP0890-20130614|21162_1 205 IRPDIITYSSAISACEKGKQWEQALELLEE 234
                  79***********98888888999999987 PP

  == domain 6    score: 8.7 bits;  conditional E-value: 0.0017
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  GlkP+ +TY+  I++  +  +   A+ ll+ M
  MMETSP0890-20130614|21162_1 239 GLKPNLITYSAAISACEKVQKWQSALILLESM 270
                  99********9999876666666666666666 PP

  == domain 7    score: 21.9 bits;  conditional E-value: 1.3e-07
    PF12854.2   2 GlkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                  G+k d++ YN  I++  +aG ++eA+ +lde
  MMETSP0890-20130614|21162_1 274 GIKADIIVYNAAISACAKAGQLEEALAILDE 304
                  99****************************9 PP

  == domain 8    score: 23.8 bits;  conditional E-value: 3.2e-08
    PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvellde 32 
                  ++P+++TY++LI++  +aG+ d+A+ l +e
  MMETSP0890-20130614|21162_1 310 VSPNIITYSILISACVKAGHWDRALALNEE 339
                  79***********************99777 PP

  == domain 9    score: 4.5 bits;  conditional E-value: 0.034
    PF12854.2   3 lkPdvvTYNtLIdGlCraGrvdeAvelldeM 33 
                  + Pd  TY  LI +     + d  + ++deM
  MMETSP0890-20130614|21162_1 346 ITPDLTTYDALITACTHGKKWDTLMAFFDEM 376
                  78**********8765555555555555555 PP

  == domain 10    score: -3.3 bits;  conditional E-value: 9.6
    PF12854.2   3 lkPdvvTYNtLId 15 
                  l P+   Y+  I+
  MMETSP0890-20130614|21162_1 382 LLPNQSIYTAAIN 394
                  6799999*99888 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.8e-05      0.03      10      58 ..      81     130 ..      77     137 .. 0.87
   2 ?    6.4   0.0     0.021        13      10      58 ..     151     201 ..     143     208 .. 0.76
   3 ?    5.2   0.0      0.05        31       4      57 ..     215     270 ..     212     277 .. 0.79
   4 !   16.8   0.0   1.2e-05    0.0074       9      58 ..     291     341 ..     288     350 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.8e-05
    PF13432.1  10 aGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraal 58 
                   G+ ++Al+++e+a+ +   P ++  + +   a+ + g++++A++  ++++
  MMETSP0890-20130614|21162_1  81 IGKSERALEVFEEAVQRGieP-DVYTYSAAIAACEQSGDWQRALQIVDEMQ 130
                  6999**************999.8999999999999*********8888776 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.021
    PF13432.1  10 aGdydeAlaaleaalala...PeaaeallllaeallrlgrldeAaallraal 58 
                   G++++A  + ++++++    P +   +  l  a+ + g++++A+ llr++ 
  MMETSP0890-20130614|21162_1 151 KGQWKRAKCIMDDIRKNGqleP-DLIMYNSLMSAYEKDGQWQQALNLLREMR 201
                  5666777766677777776666.78888999999999999999999999985 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.05
    PF13432.1   4 ArallraGd.ydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraa 57 
                  A ++ + G+ +++Al++le+  ++   P +   + +   a+ +  +++ A++ll+++
  MMETSP0890-20130614|21162_1 215 AISACEKGKqWEQALELLEETQKYGlkP-NLITYSAAISACEKVQKWQSALILLESM 270
                  556666777799********99999888.8888888888888888888888888876 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 1.2e-05
    PF13432.1   9 raGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraal 58 
                  +aG+++eAla+l+++  ++  P +   +  l  a+ ++g++d+A+al +++ 
  MMETSP0890-20130614|21162_1 291 KAGQLEEALAILDEIQIAEvsP-NIITYSILISACVKAGHWDRALALNEELR 341
                  79******************9*.*************************9985 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.31   1.9e+02      69      94 ..     102     127 ..      84     133 .. 0.72
   2 !   15.9   0.0   1.1e-05    0.0068       6      98 ..     137     237 ..     134     240 .. 0.85
   3 !   21.3   0.0   2.3e-07   0.00014       6      97 ..     243     341 ..     238     400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.31
                  --S-TTHHHHHHHT-SSHHHHHHHH- CS
   PF00637.15  69 nnydlekvaklcekadlyeeavilyk 94 
                  + y    ++  ce+ + +++a+ + +
  MMETSP0890-20130614|21162_1 102 DVYTYSAAIAACEQSGDWQRALQIVD 127
                  55666677778888888888776655 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.1e-05
                  TT--STTTHHHHHTTT-GGGGTGGGTS--...-S.--HHHHHHHHHHHHHTT--HHHHHTTS.......S---S-TTHHHHHHHT-SSHHHHHHHH----T CS
   PF00637.15   6 dpidlsevvklfekaglleelieyLekvlketsr.enpavqtallelyakyedpekleeflk.......knnnydlekvaklcekadlyeeavilykkine 98 
                  + i++s+ +  ++k+g+++  +  + +++k+++   + +++++l+ +y k+++ + + + l+       + + +   ++++ cek + +e+a++l++  ++
  MMETSP0890-20130614|21162_1 137 NVISYSAAIAVLSKKGQWKRAKCIMDDIRKNGQLePDLIMYNSLMSAYEKDGQWQQALNLLRemrefriRPDIITYSSAISACEKGKQWEQALELLEETQK 237
                  5688999**********************9884447899************888888888886554444566688899****************9987665 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 2.3e-07
                  TT--STTTHHHHHTTT-GGGGTGGGTS--...-S--HHHHHHHHHHHHHTT--HHHHHTTS.......S---S-TTHHHHHHHT-SSHHHHHHHH---- CS
   PF00637.15   6 dpidlsevvklfekaglleelieyLekvlketsrenpavqtallelyakyedpekleeflk.......knnnydlekvaklcekadlyeeavilykkin 97 
                  + i +s+ ++++ek ++++  + +Le+ +  + +++ +v++a + + ak +++e++ ++l+       + n +    +++ c ka+++++a+ l + ++
  MMETSP0890-20130614|21162_1 243 NLITYSAAISACEKVQKWQSALILLESMRRSGIKADIIVYNAAISACAKAGQLEEALAILDeiqiaevSPNIITYSILISACVKAGHWDRALALNEELR 341
                  5678999******************************************************9988875555599999***************9665533 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.21   1.3e+02      11      31 ..      78      98 ..      68     104 .. 0.81
   2 ?    5.2   0.0      0.06        37       4      26 ..     106     128 ..     101     132 .. 0.84
   3 !    8.6   0.0    0.0047       2.9       6      27 ..     179     200 ..     175     208 .. 0.86
   4 ?    2.5   0.0      0.45   2.8e+02       7      26 ..     215     234 ..     210     240 .. 0.82
   5 ?    6.8   0.0     0.017        11       5      27 ..     283     305 ..     280     313 .. 0.85
   6 ?    3.9   0.0      0.16        97       4      23 ..     317     336 ..     315     374 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.21
    PF13428.1 11 llalGdpdeAiallrralala 31
                 ++  G  ++A++++++a++++
  MMETSP0890-20130614|21162_1 78 FRSIGKSERALEVFEEAVQRG 98
                 5667999**********9975 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.06
    PF13428.1   4 llalarallalGdpdeAiallrr 26 
                  + a  +a++++Gd+++A++  ++
  MMETSP0890-20130614|21162_1 106 YSAAIAACEQSGDWQRALQIVDE 128
                  67788999**********98765 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0047
    PF13428.1   6 alarallalGdpdeAiallrra 27 
                   l  a++  G++++A++llr++
  MMETSP0890-20130614|21162_1 179 SLMSAYEKDGQWQQALNLLREM 200
                  6889****************97 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.45
    PF13428.1   7 larallalGdpdeAiallrr 26 
                     a++   ++++A++ll++
  MMETSP0890-20130614|21162_1 215 AISACEKGKQWEQALELLEE 234
                  566788889*********97 PP

  == domain 5    score: 6.8 bits;  conditional E-value: 0.017
    PF13428.1   5 lalarallalGdpdeAiallrra 27 
                   a   a++ +G+++eA+a l+++
  MMETSP0890-20130614|21162_1 283 NAAISACAKAGQLEEALAILDEI 305
                  56778999************986 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.16
    PF13428.1   4 llalarallalGdpdeAial 23 
                  +  l  a+  +G++d+A+al
  MMETSP0890-20130614|21162_1 317 YSILISACVKAGHWDRALAL 336
                  66789999*********997 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.023        14       7      64 ..      86     143 ..      81     162 .. 0.60
   2 ?    6.2   0.0     0.016       9.9       6      83 ..     120     199 ..     115     200 .. 0.64
   3 !   14.8   0.0   3.3e-05     0.021      31      83 ..     180     234 ..     165     235 .. 0.87
   4 !   11.3   0.2   0.00041      0.25      39      83 ..     223     269 ..     221     270 .. 0.89
   5 !    6.9   0.1    0.0095       5.9      35      79 ..     289     335 ..     277     340 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.023
                  HHHHHHHHHCCC-ST-HHHHCHHHHHHHHH.H---HHHHHHHHHC.TSHCHCBHHHHHHH CS
    PF12895.2   7 nAlflaekllaespkdpedaylyalAlcly.lngeykrAyellrk.leldssslgcryll 64 
                   Al ++e++++    +  d+y y  A + + ++g+++rA++++++ + +  +   ++y +
  MMETSP0890-20130614|21162_1  86 RALEVFEEAVQRGI-E-PDVYTYSAAIAACeQSGDWQRALQIVDEmQGHGIEPNVISYSA 143
                  56666777766653.2.5677777666665256899999999977733333222445544 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.016
                  HHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHHH...HHHHHTT-HHHHCCCHHH CS
    PF12895.2   6 knAlflaekllaespkdpedaylyalAlclylngeykrAyellrkleldssslgcryllA...rcllklgkydeAiavLek 83 
                  + Al + +++     ++p+  ++ a   +l + g++krA  + ++   + +     ++++    +++k g++++A+++L +
  MMETSP0890-20130614|21162_1 120 QRALQIVDEMQGHG-IEPNVISYSAAIAVLSKKGQWKRAKCIMDDIRKNGQLEPDLIMYNslmSAYEKDGQWQQALNLLRE 199
                  55555555554443.243333444445677888999999999988555554556777776577888899999999999875 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 3.3e-05
                  HHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHH.HHHHHTT-HHHHCCCHHH CS
    PF12895.2  31 lAlclylngeykrAyellrk.leldssslgcryllA.rcllklgkydeAiavLek 83 
                  l  ++ + g++++A++llr+  e++ + + + y  A  +++k +++++A+++Le+
  MMETSP0890-20130614|21162_1 180 LMSAYEKDGQWQQALNLLREmREFRIRPDIITYSSAiSACEKGKQWEQALELLEE 234
                  5678999***********99*9999999888898888****************97 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00041
                  --HHHHHHHHHC.TSHCHCBHHHHHHHH.HHHHHTT-HHHHCCCHHH CS
    PF12895.2  39 geykrAyellrk.leldssslgcryllA.rcllklgkydeAiavLek 83 
                  +++++A+ell++ +++  +   + y +A  +++k +k++ A+ +Le+
  MMETSP0890-20130614|21162_1 223 KQWEQALELLEEtQKYGLKPNLITYSAAiSACEKVQKWQSALILLES 269
                  79********9998888877689999988**************9986 PP

  == domain 5    score: 6.9 bits;  conditional E-value: 0.0095
                  HHH---HHHHHHHHHC...TSHCHCBHHHHHHHHHHHHHTT-HHHHCC CS
    PF12895.2  35 lylngeykrAyellrk...leldssslgcryllArcllklgkydeAia 79 
                    ++g+ ++A+ +l++    e++++ +++++l+  +++k g +d A+a
  MMETSP0890-20130614|21162_1 289 CAKAGQLEEALAILDEiqiAEVSPNIITYSILI-SACVKAGHWDRALA 335
                  457899999999998887666666665555554.56788999998887 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.074        46      10      28 ..      79      95 ..      78     102 .. 0.84
   2 ?    5.5   0.0     0.024        15       8      20 ..     112     124 ..     105     128 .. 0.83
   3 !    9.5   0.1    0.0013      0.78       5      24 ..     180     199 ..     177     211 .. 0.80
   4 ?    3.9   0.1     0.081        50       7      24 ..     217     234 ..     211     239 .. 0.85
   5 ?    1.3   0.0      0.55   3.4e+02       7      23 ..     252     268 ..     246     271 .. 0.74
   6 ?   -0.5   0.1         2   1.2e+03       7      22 ..     287     302 ..     281     309 .. 0.72
   7 !    7.7   0.0    0.0049       3.1       2      24 ..     317     339 ..     316     362 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.074
    PF13176.1 10 srlgdyekAielyeraLal 28
                 ++ g+ e+A+e++e+  a+
  MMETSP0890-20130614|21162_1 79 RSIGKSERALEVFEE--AV 95
                 7899**********9..65 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.024
    PF13176.1   8 lysrlgdyekAie 20 
                  +++++gd+++A++
  MMETSP0890-20130614|21162_1 112 ACEQSGDWQRALQ 124
                  799********87 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0013
    PF13176.1   5 LarlysrlgdyekAielyer 24 
                  L ++y+++g++++A++l+++
  MMETSP0890-20130614|21162_1 180 LMSAYEKDGQWQQALNLLRE 199
                  5689*************998 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.081
    PF13176.1   7 rlysrlgdyekAielyer 24 
                  +++++  ++e+A+el+e+
  MMETSP0890-20130614|21162_1 217 SACEKGKQWEQALELLEE 234
                  57888889*******997 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.55
    PF13176.1   7 rlysrlgdyekAielye 23 
                  ++++++++++ A+ l+e
  MMETSP0890-20130614|21162_1 252 SACEKVQKWQSALILLE 268
                  68899999999987776 PP

  == domain 6    score: -0.5 bits;  conditional E-value: 2
    PF13176.1   7 rlysrlgdyekAiely 22 
                  +++ + g+ e+A+ ++
  MMETSP0890-20130614|21162_1 287 SACAKAGQLEEALAIL 302
                  6788888888887765 PP

  == domain 7    score: 7.7 bits;  conditional E-value: 0.0049
    PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                  ++ L +++++ g +++A+ l+e+
  MMETSP0890-20130614|21162_1 317 YSILISACVKAGHWDRALALNEE 339
                  6778899**************98 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.091        56     144     175 ..      66      97 ..      22     104 .. 0.76
   2 ?    4.9   0.0     0.017        11     110     171 ..      68     128 ..      64     132 .. 0.73
   3 !   12.5   0.0   7.8e-05     0.048     111     171 ..     139     199 ..     129     203 .. 0.95
   4 !    7.9   0.5     0.002       1.3     111     170 ..     245     303 ..     211     313 .. 0.79
   5 ?    1.4   0.0       0.2   1.2e+02     114     169 ..     283     337 ..     276     353 .. 0.71
   6 ?    0.3   0.0      0.42   2.6e+02     116     166 ..     356     406 ..     349     416 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.091
    PF13429.1 144 qsalfllaraellrqegqkkkAlrllrralal 175
                  + + +l ++ +  r  g++++Al+++++a+++
  MMETSP0890-20130614|21162_1  66 RRPKVLTMVMSKFRSIGKSERALEVFEEAVQR 97 
                  45778888889999***************986 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.017
    PF13429.1 110 prlLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrr 171
                  p++L+  +      ++ +r  e+++++ ++  +e + ++++a +++ +q g++++Al+++++
  MMETSP0890-20130614|21162_1  68 PKVLTMVMSKFRSIGKSERALEVFEEAVQRG-IEPDVYTYSAAIAACEQSGDWQRALQIVDE 128
                  5555666666666666666667777765555.889999999999999999999999998865 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 7.8e-05
    PF13429.1 111 rlLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllrr 171
                    +++a+ +l + +++kr + ++  + ++ ++e +  ++  + +++++ gq+++Al+llr+
  MMETSP0890-20130614|21162_1 139 ISYSAAIAVLSKKGQWKRAKCIMDDIRKNGQLEPDLIMYNSLMSAYEKDGQWQQALNLLRE 199
                  56899*****************************************************997 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.002
    PF13429.1 111 rlLqsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrllr 170
                    +++a+   e+ ++++    ll+s ++++ ++ +  ++ a +++  ++gq ++Al++l+
  MMETSP0890-20130614|21162_1 245 ITYSAAISACEKVQKWQSALILLES-MRRSGIKADIIVYNAAISACAKAGQLEEALAILD 303
                  5678899999999999999999999.7777899999999999999999999999999876 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.2
    PF13429.1 114 qsalellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAlrll 169
                  ++a+    +a+++++  ++l +++  ++++ +  ++++++++  ++g++++Al+l 
  MMETSP0890-20130614|21162_1 283 NAAISACAKAGQLEEALAILDEIQI-AEVSPNIITYSILISACVKAGHWDRALALN 337
                  5566666666666666666666433.336777788999999999999999999765 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.42
    PF13429.1 116 alellerakdykrieellasleekeaaeqsalfllaraellrqegqkkkAl 166
                   +   +  k+++++ +++ +++ k+ +  ++ ++ a +++ +  g +++A 
  MMETSP0890-20130614|21162_1 356 LITACTHGKKWDTLMAFFDEMKTKQHLLPNQSIYTAAINACEHLGLQQRAS 406
                  5677788899************99999999999999999999999888875 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0057       3.5      15      67 ..      78     124 ..      68     128 .. 0.82
   2 !   13.0   0.5   0.00011     0.068       7      72 ..     176     235 ..     171     238 .. 0.87
   3 ?    4.7   0.1      0.04        25       8      34 ..     212     238 ..     205     269 .. 0.69
   4 !    8.0   0.2    0.0039       2.4       8      71 ..     282     339 ..     276     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0057
    PF13424.1  15 lrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAle 67 
                  +r  g+ ++Ale +e+a++  +       pd + ++     ++++ gd + Al+
  MMETSP0890-20130614|21162_1  78 FRSIGKSERALEVFEEAVQRgI------EPD-VYTYSAAIAACEQSGDWQRALQ 124
                  5678999999999999999865......688.6888888889999999999987 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00011
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                   +n l  ++++ g++++Al+l+++  e +       pd   ++     ++++ ++ ++Ale+le+ 
  MMETSP0890-20130614|21162_1 176 MYNSLMSAYEKDGQWQQALNLLREMREFR-----IRPD-IITYSSAISACEKGKQWEQALELLEET 235
                  699********************998884.....4688.679999999999999999999999985 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.04
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel 34 
                  ++    ++++ +++++Alel+e+  + 
  MMETSP0890-20130614|21162_1 212 YSSAISACEKGKQWEQALELLEETQKY 238
                  445555667888999999999998765 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.0039
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylek 71 
                  +n    ++ + g+++eAl+++ +  +++    + +p+   ++  l  +++++g  d Al++ e+
  MMETSP0890-20130614|21162_1 282 YNAAISACAKAGQLEEALAILDEI-QIA----EVSPN-IITYSILISACVKAGHWDRALALNEE 339
                  544446666999999999999996.454....46777.78999999999999999999999886 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.93   5.7e+02      13      30 ..      79      96 ..      78      97 .. 0.83
   2 ?    1.4   0.0      0.46   2.8e+02       9      27 ..     109     128 ..     108     130 .. 0.82
   3 !    8.6   0.1    0.0025       1.5      11      32 ..     183     204 ..     177     206 .. 0.87
   4 ?    5.6   0.0     0.022        14      15      30 ..     222     237 ..     217     239 .. 0.85
   5 ?    5.3   0.1     0.029        18      11      29 ..     288     306 ..     282     309 .. 0.84
   6 ?    1.5   0.0      0.42   2.6e+02      13      29 ..     325     341 ..     316     342 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.93
    PF13374.1 13 rargryeeAlaleeeala 30
                 r  g+ e+Al+ +eea+ 
  MMETSP0890-20130614|21162_1 79 RSIGKSERALEVFEEAVQ 96
                 667999********9985 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.46
    PF13374.1   9 Alalrar.gryeeAlaleee 27 
                  A+a +++ g++++Al+++ e
  MMETSP0890-20130614|21162_1 109 AIAACEQsGDWQRALQIVDE 128
                  56677788*******99876 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0025
    PF13374.1  11 alrargryeeAlaleeealair 32 
                  a+ + g++++Al+l++e ++ r
  MMETSP0890-20130614|21162_1 183 AYEKDGQWQQALNLLREMREFR 204
                  78899************98877 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.022
    PF13374.1  15 rgryeeAlaleeeala 30 
                   +++e+Al+l+ee++ 
  MMETSP0890-20130614|21162_1 222 GKQWEQALELLEETQK 237
                  589**********876 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.029
    PF13374.1  11 alrargryeeAlaleeeal 29 
                  a+++ g++eeAla++ e++
  MMETSP0890-20130614|21162_1 288 ACAKAGQLEEALAILDEIQ 306
                  67889**********9987 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.42
    PF13374.1  13 rargryeeAlaleeeal 29 
                   + g +++Alal ee +
  MMETSP0890-20130614|21162_1 325 VKAGHWDRALALNEELR 341
                  57899*******99875 PP

>> PF09205.5  Domain of unknown function (DUF1955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.019        12     106     152 ..      53     100 ..      30     104 .. 0.78
   2 !   11.1   0.0    0.0003      0.19      91     146 ..     143     200 ..     132     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.019
                  HH---TT-----S.-HHHHHHHHHHHHH---HHHHHHHHHHHHH---H CS
    PF09205.5 106 ekilkellkneei.kaelllkianalkkigdereanellkeackkGvk 152
                  e++ + +   +ei ++++l  + + ++ ig++  a e+++ea ++G+ 
  MMETSP0890-20130614|21162_1  53 EDVEAIVSSLGEIrRPKVLTMVMSKFRSIGKSERALEVFEEAVQRGIE 100
                  44444444434441688999999***********************85 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0003
                  HHHHHHHH---HHHHHH---TT-----S-HHHHH..HHHHHHHH---HHHHHHHHHHH CS
    PF09205.5  91 laldvlvkkgkkdklekilkellkneeikaelll..kianalkkigdereanellkea 146
                   a+ vl kkg+  + + i+ ++ kn++++++l++   + +a++k g+ ++a +ll+e 
  MMETSP0890-20130614|21162_1 143 AAIAVLSKKGQWKRAKCIMDDIRKNGQLEPDLIMynSLMSAYEKDGQWQQALNLLREM 200
                  68999***************************9955699***************9985 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0046       2.8      17      59 ..      82     124 ..      76     129 .. 0.83
   2 !    8.6   0.2    0.0021       1.3       6      63 ..     177     234 ..     172     238 .. 0.80
   3 ?   -2.2   0.0       4.8     3e+03      54      64 ..     247     257 ..     237     264 .. 0.81
   4 ?    2.3   0.2      0.19   1.2e+02       6      28 ..     282     304 ..     277     340 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0046
    PF13414.1  17 gdydeAieayekAle..ldpnnaelyynlAlaylklgkdyeeAle 59 
                  g+ + A+e +e+A++  ++p+   + +++A++ +  g d+++Al+
  MMETSP0890-20130614|21162_1  82 GKSERALEVFEEAVQrgIEPDVYTYSAAIAACEQS-G-DWQRALQ 124
                  78899*********977899888888889999888.9.5789986 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0021
    PF13414.1   6 lkelGnalfkegdydeAieayekAle..ldpnnaelyynlAlaylklgkdyeeAledyek 63 
                  ++ l  a+ k g++++A+ ++++  e  ++p+  ++ y  A +  ++gk++e+Ale +e+
  MMETSP0890-20130614|21162_1 177 YNSLMSAYEKDGQWQQALNLLREMREfrIRPD--IITYSSAISACEKGKQWEQALELLEE 234
                  56666788899*************98334565..77777888888888999****98875 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 4.8
    PF13414.1  54 yeeAledyekA 64 
                  y +A+ ++ek+
  MMETSP0890-20130614|21162_1 247 YSAAISACEKV 257
                  67788888876 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.19
    PF13414.1   6 lkelGnalfkegdydeAieayek 28 
                  ++++  a+ k+g+++eA++ +++
  MMETSP0890-20130614|21162_1 282 YNAAISACAKAGQLEEALAILDE 304
                  55555567888888888888876 PP

>> PF06239.6  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3     8e+02      27      57 ..      67      97 ..      39     107 .. 0.62
   2 ?    2.5   0.0     0.081        50     122     153 ..     121     152 ..     115     161 .. 0.83
   3 ?    2.4   0.0     0.086        53     121     141 ..     191     211 ..     167     221 .. 0.67
   4 ?    3.5   0.0     0.039        24      76     102 ..     197     223 ..     190     254 .. 0.66
   5 ?    0.9   0.0      0.25   1.6e+02      76      95 ..     267     286 ..     261     292 .. 0.84
   6 ?    1.8   0.0      0.13        82     119     153 ..     294     328 ..     289     335 .. 0.85
   7 ?   -0.9   0.0      0.89   5.5e+02      80     102 ..     342     364 ..     333     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.3
    PF06239.6 27 elsslaavedlfeaaesekrdkaafleivev 57
                 + + l++v ++f+++ +++r  + f e+v+ 
  MMETSP0890-20130614|21162_1 67 RPKVLTMVMSKFRSIGKSERALEVFEEAVQR 97
                 3444677777788888888888888777765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.081
    PF06239.6 122 laidvLeqmeeygvmPdketeallvniFGkks 153
                   a+++ ++m+ +g+ P+   ++  + +  kk+
  MMETSP0890-20130614|21162_1 121 RALQIVDEMQGHGIEPNVISYSAAIAVLSKKG 152
                  5799*************988887777777766 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.086
    PF06239.6 121 elaidvLeqmeeygvmPdket 141
                  + a+++L +m e  + Pd  t
  MMETSP0890-20130614|21162_1 191 QQALNLLREMREFRIRPDIIT 211
                  455666666666666666544 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.039
    PF06239.6  76 LkkmeeygvekDlevYkalldvfPkgk 102
                  L++m+e+ +  D+ +Y + +    kgk
  MMETSP0890-20130614|21162_1 197 LREMREFRIRPDIITYSSAISACEKGK 223
                  566666666666666666665555554 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.25
    PF06239.6  76 LkkmeeygvekDlevYkall 95 
                  L+ m+  g++ D+ vY+a +
  MMETSP0890-20130614|21162_1 267 LESMRRSGIKADIIVYNAAI 286
                  77899999999999999877 PP

  == domain 6    score: 1.8 bits;  conditional E-value: 0.13
    PF06239.6 119 qqelaidvLeqmeeygvmPdketeallvniFGkks 153
                  q e a+++L++++   v P+  t+++l+ +  k++
  MMETSP0890-20130614|21162_1 294 QLEEALAILDEIQIAEVSPNIITYSILISACVKAG 328
                  677899*********************98766555 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 0.89
    PF06239.6  80 eeygvekDlevYkalldvfPkgk 102
                  +e+ +  Dl +Y+al+    +gk
  MMETSP0890-20130614|21162_1 342 TEHQITPDLTTYDALITACTHGK 364
                  57888899999999997666655 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.067        42       8      29 ..      75      97 ..      71      97 .. 0.84
   2 ?    0.3   0.1       1.8   1.1e+03       9      22 ..     111     125 ..     104     128 .. 0.68
   3 ?    6.8   0.1     0.015       9.3       7      25 ..     180     199 ..     175     202 .. 0.73
   4 ?    5.5   0.1     0.039        24      10      25 ..     219     234 ..     212     238 .. 0.78
   5 ?    4.1   0.1      0.11        67       4      26 ..     282     305 ..     281     306 .. 0.82
   6 ?   -1.2   0.0       5.2   3.2e+03      12      22 ..     326     336 ..     320     344 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.067
                 HHHHH.HHHHHHHHHHHHHHHHH CS
    PF13174.1  8 lsyyk.lgdtdeAlealerlike 29
                 +s ++  g++++Ale++e+ +++
  MMETSP0890-20130614|21162_1 75 MSKFRsIGKSERALEVFEEAVQR 97
                 67777679***********9986 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.8
                  HHHHH.HHHHHHHHH CS
    PF13174.1   9 syykl.gdtdeAlea 22 
                  +  ++ gd+++Al++
  MMETSP0890-20130614|21162_1 111 AACEQsGDWQRALQI 125
                  4444226*****986 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.015
                  HHHHHH.HHHHHHHHHHHHH CS
    PF13174.1   7 alsyyk.lgdtdeAlealer 25 
                   +s y+  g++++Al +l++
  MMETSP0890-20130614|21162_1 180 LMSAYEkDGQWQQALNLLRE 199
                  555555478*******9987 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHHHHH CS
    PF13174.1  10 yyklgdtdeAlealer 25 
                   +k++++++Ale+le+
  MMETSP0890-20130614|21162_1 219 CEKGKQWEQALELLEE 234
                  45689*********97 PP

  == domain 5    score: 4.1 bits;  conditional E-value: 0.11
                  HHHHHHHHH.HHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyk.lgdtdeAlealerl 26 
                  y++a s  + +g+ +eAl++l+++
  MMETSP0890-20130614|21162_1 282 YNAAISACAkAGQLEEALAILDEI 305
                  788877776599********9875 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 5.2
                  HHHHHHHHHHH CS
    PF13174.1  12 klgdtdeAlea 22 
                  k+g++d+Al++
  MMETSP0890-20130614|21162_1 326 KAGHWDRALAL 336
                  6789****986 PP

>> PF12921.2  Mitochondrial ATPase expression
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.06        37       7      80 ..      57     131 ..      53     133 .. 0.83
   2 !    6.6   0.0    0.0067       4.2      42      78 ..     164     200 ..     147     206 .. 0.84
   3 ?   -1.8   0.0       2.7   1.6e+03      56      79 ..     213     236 ..     201     268 .. 0.73
   4 ?    1.4   0.0      0.28   1.7e+02      57      79 ..     284     306 ..     271     309 .. 0.86
   5 ?    0.1   0.0      0.68   4.2e+02      42      81 ..     340     379 ..     315     423 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.06
    PF12921.2   7 llivslgyegqlellekiietvWgIdseskskeek.vdkssplyPssrlLkaivssyasnkdlssalkildkfse 80 
                  +++ slg     ++l+ +++++ +I   +   e +    ++ + P+  + +a + +    +d ++al+i+d+++ 
  MMETSP0890-20130614|21162_1  57 AIVSSLGEIRRPKVLTMVMSKFRSIGKSERALEVFeEAVQRGIEPDVYTYSAAIAACEQSGDWQRALQIVDEMQG 131
                  678888888888888888888888887777777766777888999999999*9******************9986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0067
    PF12921.2  42 vdkssplyPssrlLkaivssyasnkdlssalkildkf 78 
                    k+ +l P++ +  +++s+y ++++ ++al++l+++
  MMETSP0890-20130614|21162_1 164 IRKNGQLEPDLIMYNSLMSAYEKDGQWQQALNLLREM 200
                  67788999*************************9876 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.7
    PF12921.2  56 kaivssyasnkdlssalkildkfs 79 
                  ++ +s+  + k+ ++al++l++ +
  MMETSP0890-20130614|21162_1 213 SSAISACEKGKQWEQALELLEETQ 236
                  556666777788888888887754 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.28
    PF12921.2  57 aivssyasnkdlssalkildkfs 79 
                  a +s+ a+ ++l++al+ild+++
  MMETSP0890-20130614|21162_1 284 AAISACAKAGQLEEALAILDEIQ 306
                  668888999***********987 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.68
    PF12921.2  42 vdkssplyPssrlLkaivssyasnkdlssalkildkfsek 81 
                  +  + +++P++ +  a++++  + k  ++ ++  d++ +k
  MMETSP0890-20130614|21162_1 340 LRTEHQITPDLTTYDALITACTHGKKWDTLMAFFDEMKTK 379
                  5666777888888888888877777777777777766655 PP

>> PF10037.4  Mitochondrial 28S ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0019       1.2     115     162 ..      82     129 ..      77     133 .. 0.94
   2 ?    1.8   0.0      0.14        85     103     155 ..     211     263 ..     206     272 .. 0.79
   3 ?    2.1   0.0      0.11        66     106     172 ..     284     350 ..     276     382 .. 0.81
   4 ?   -2.4   0.1       2.5   1.5e+03     392     413 ..     406     427 ..     370     429 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0019
    PF10037.4 115 qaedkllklLknriqyGiFvDdftanlllDsflkkgefksAasvvtel 162
                  ++ +++l++ ++ +q Gi +D +t   ++    + g+++ A+++v e+
  MMETSP0890-20130614|21162_1  82 GKSERALEVFEEAVQRGIEPDVYTYSAAIAACEQSGDWQRALQIVDEM 129
                  56799****************************************998 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.14
    PF10037.4 103 tihaiiRqlLkyqaedkllklLknriqyGiFvDdftanlllDsflkkgefksA 155
                  t ++ i  + k ++ +++l+lL++  +yG+ ++  t   ++    k + ++sA
  MMETSP0890-20130614|21162_1 211 TYSSAISACEKGKQWEQALELLEETQKYGLKPNLITYSAAISACEKVQKWQSA 263
                  567778888899999**************999988877766666666666666 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.11
    PF10037.4 106 aiiRqlLkyqaedkllklLknriqyGiFvDdftanlllDsflkkgefksAasvvtelmlqesfdnes 172
                  a i  + k ++ +++l +L++     + ++  t  +l+   +k g++  A+++ +el    ++   +
  MMETSP0890-20130614|21162_1 284 AAISACAKAGQLEEALAILDEIQIAEVSPNIITYSILISACVKAGHWDRALALNEELRTEHQITPDL 350
                  55677888888888888888866677999999**********************9997766655555 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 2.5
    PF10037.4 392 kliqrkkkkrekadeeyqqrea 413
                   + q+++k+r+   ++++++++
  MMETSP0890-20130614|21162_1 406 SILQQEQKQRKLYTRQKKPPSK 427
                  6677777777777777777766 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0016      0.96      27      68 ..      57      98 ..      47     127 .. 0.79
   2 ?   -1.1   0.0       2.6   1.6e+03      49      78 ..     165     195 ..     152     219 .. 0.71
   3 ?    0.8   0.0      0.69   4.3e+02      51      66 ..     292     307 ..     261     362 .. 0.73
   4 ?   -1.2   0.0       2.8   1.7e+03      51      84 ..     327     357 ..     315     397 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0016
    PF12688.2 27 AlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaea 68
                 A+   L ++rr+++     S  R +G+ e++l ++e+++++ 
  MMETSP0890-20130614|21162_1 57 AIVSSLGEIRRPKVLTMVMSKFRSIGKSERALEVFEEAVQRG 98
                 666778899999999999******************999863 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.6
    PF12688.2  49 RnlGrveeslalleaelaeapgd.elddala 78 
                  R  G++e  l++ ++ +++  +d ++++al+
  MMETSP0890-20130614|21162_1 165 RKNGQLEPDLIMYNSLMSAYEKDgQWQQALN 195
                  6667777777777777666554423555554 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.69
    PF12688.2  51 lGrveeslalleaela 66 
                   G++ee+la+l++ + 
  MMETSP0890-20130614|21162_1 292 AGQLEEALAILDEIQI 307
                  6788888888876543 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 2.8
    PF12688.2  51 lGrveeslalleaelaeapgdelddalaaflALa 84 
                   G+ +++lal e+  +e   ++++  l+++ AL+
  MMETSP0890-20130614|21162_1 327 AGHWDRALALNEELRTE---HQITPDLTTYDALI 357
                  58888888887776665...45566666666664 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.067        42      15      29 ..      82      96 ..      78      97 .. 0.88
   2 ?    1.1   0.0      0.69   4.3e+02      10      22 ..     112     124 ..     111     128 .. 0.84
   3 ?    5.4   0.1     0.029        18      10      26 ..     183     199 ..     182     203 .. 0.90
   4 ?    2.9   0.1      0.18   1.1e+02      11      26 ..     219     234 ..     217     238 .. 0.81
   5 ?    2.7   0.0      0.21   1.3e+02      10      24 ..     288     302 ..     287     305 .. 0.83
   6 ?    0.6   0.0      0.96   5.9e+02      15      31 ..     328     337 ..     323     340 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.067
                 T-HHHHHHHHHHHHH CS
   PF07719.12 15 gdyeeAleafekAle 29
                 g+ e+Ale fe+A++
  MMETSP0890-20130614|21162_1 82 GKSERALEVFEEAVQ 96
                 7889*********97 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.69
                  HHHHTT-HHHHHH CS
   PF07719.12  10 ayyklgdyeeAle 22 
                  a++++gd+++Al+
  MMETSP0890-20130614|21162_1 112 ACEQSGDWQRALQ 124
                  688999**99986 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.029
                  HHHHTT-HHHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafek 26 
                  ay+k g++++Al+++++
  MMETSP0890-20130614|21162_1 183 AYEKDGQWQQALNLLRE 199
                  89***********9998 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.18
                  HHHTT-HHHHHHHHHH CS
   PF07719.12  11 yyklgdyeeAleafek 26 
                  ++k +++e+Ale++e+
  MMETSP0890-20130614|21162_1 219 CEKGKQWEQALELLEE 234
                  6777999999999998 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.21
                  HHHHTT-HHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleaf 24 
                  a++k+g++eeAl+ +
  MMETSP0890-20130614|21162_1 288 ACAKAGQLEEALAIL 302
                  6899*******9865 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.96
                  T-HHHHHHHHHHHHHH- CS
   PF07719.12  15 gdyeeAleafekAleld 31 
                  g       ++++Al+l+
  MMETSP0890-20130614|21162_1 328 G-------HWDRALALN 337
                  4.......455666665 PP

>> PF08542.6  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.9   4.3e+03      11      38 ..      74     102 ..      67     104 .. 0.67
   2 ?    3.3   0.0      0.12        72      13      40 ..     112     139 ..     100     142 .. 0.81
   3 ?    0.2   0.0       1.1   6.6e+02      15      68 ..     149     203 ..     140     208 .. 0.78
   4 ?    2.6   0.1       0.2   1.2e+02      13      41 ..     252     281 ..     205     285 .. 0.78
   5 ?    1.2   0.0      0.51   3.2e+02      12      40 ..     286     315 ..     282     322 .. 0.85
   6 ?   -0.8   0.0       2.2   1.4e+03       9      46 ..     354     394 ..     347     409 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 6.9
                  HHHHHHT.SSHHHHHHHHHHHHH----HH CS
    PF08542.6  11 ilssilk.gklaearetlyellkkgisae 38 
                  ++s+  + gk++ a e ++e ++ gi ++
  MMETSP0890-20130614|21162_1  74 VMSKFRSiGKSERALEVFEEAVQRGIEPD 102
                  34444442488999999999999998776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.12
                  HHHHTSSHHHHHHHHHHHHH----HHHH CS
    PF08542.6  13 ssilkgklaearetlyellkkgisaedI 40 
                      +g++  a ++++e+  +gi +  I
  MMETSP0890-20130614|21162_1 112 ACEQSGDWQRALQIVDEMQGHGIEPNVI 139
                  333456*****************99876 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 1.1
                  HHTSSHHHHHHHHHHHHH-.---HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHH CS
    PF08542.6  15 ilkgklaearetlyellkk.gisaedIltqlyevlkdqdideqlklelidlaaey 68 
                   +kg ++ a  +++++ k+  + ++ I+ + + +  ++d + q+ l+l++++ e+
  MMETSP0890-20130614|21162_1 149 SKKGQWKRAKCIMDDIRKNgQLEPDLIMYNSLMSAYEKDGQWQQALNLLREMREF 203
                  4556899999999999999889999999888888888877888888888877665 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.2
                  HHHHTS..SHHHHHHHHHHHHH----HHHHH CS
    PF08542.6  13 ssilkg..klaearetlyellkkgisaedIl 41 
                  s++  +  k+  a   l+ +  +gi a++I+
  MMETSP0890-20130614|21162_1 252 SACE-KvqKWQSALILLESMRRSGIKADIIV 281
                  3333.14588888889999999999999997 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.51
                  HHHHHTS.SHHHHHHHHHHHHH----HHHH CS
    PF08542.6  12 lssilkg.klaearetlyellkkgisaedI 40 
                  +s+++k+  l+ea  +l+e+    +s+ +I
  MMETSP0890-20130614|21162_1 286 ISACAKAgQLEEALAILDEIQIAEVSPNII 315
                  57788867************9999999888 PP

  == domain 6    score: -0.8 bits;  conditional E-value: 2.2
                  HHHHHHHHTS.SHHHHHHHHHHHHH-..---HHHHHHHHHH CS
    PF08542.6   9 knilssilkg.klaearetlyellkk..gisaedIltqlye 46 
                  + ++++++ g k+++    ++e+++k   ++ + I t   +
  MMETSP0890-20130614|21162_1 354 DALITACTHGkKWDTLMAFFDEMKTKqhLLPNQSIYTAAIN 394
                  56778888878999999999999988656666666665555 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.6   3.7e+02       6      26 .]     108     128 ..     103     128 .. 0.80
   2 ?    1.2   0.0      0.97   6.1e+02      14      26 .]     187     199 ..     180     199 .. 0.85
   3 ?    0.8   0.4       1.3   8.1e+02      17      26 .]     225     234 ..     224     234 .. 0.89
   4 ?    8.1   0.1    0.0061       3.8      10      26 .]     288     304 ..     285     304 .. 0.92
   5 ?    2.0   0.0      0.53   3.3e+02      10      23 ..     323     336 ..     316     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.6
                  --HHHHHH-------HHHHHT CS
    PF07721.9   6 aLArallalGdldeAraller 26 
                  a   a+ + Gd+ +A++++++
  MMETSP0890-20130614|21162_1 108 AAIAACEQSGDWQRALQIVDE 128
                  556788899*******99875 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.97
                  -------HHHHHT CS
    PF07721.9  14 lGdldeAraller 26 
                   G++ +A+ ll++
  MMETSP0890-20130614|21162_1 187 DGQWQQALNLLRE 199
                  699********97 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 1.3
                  ----HHHHHT CS
    PF07721.9  17 ldeAraller 26 
                  +++A++lle+
  MMETSP0890-20130614|21162_1 225 WEQALELLEE 234
                  89******97 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0061
                  HHHH-------HHHHHT CS
    PF07721.9  10 allalGdldeAraller 26 
                  a++ +G+l+eA+a+l++
  MMETSP0890-20130614|21162_1 288 ACAKAGQLEEALAILDE 304
                  7899***********86 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.53
                  HHHH-------HHH CS
    PF07721.9  10 allalGdldeAral 23 
                  a+  +G++d+A+al
  MMETSP0890-20130614|21162_1 323 ACVKAGHWDRALAL 336
                  77789999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:01.00
# Mc/sec: 1044.81
//
Query:       MMETSP0890-20130614|21200_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-46  157.2   4.0    1.3e-44  151.1   2.7    2.7  1  PF12345.3  Protein of unknown function (DUF3641)
    1.3e-10   41.5   0.1      4e-10   40.0   0.0    1.8  2  PF04055.16 Radical SAM superfamily
    0.00099   19.1   0.4     0.0026   17.7   0.1    1.9  2  PF13353.1  4Fe-4S single cluster domain
     0.0033   17.3   0.1     0.0091   15.9   0.0    1.8  1  PF13394.1  4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.057   12.5   0.1          3    7.0   0.0    2.4  2  PF03791.8  KNOX2 domain


Domain annotation for each model (and alignments):
>> PF12345.3  Protein of unknown function (DUF3641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   2.7   4.7e-48   1.3e-44       1     130 [.     275     424 .]     275     424 .] 0.89

  Alignments for each domain:
  == domain 1    score: 151.1 bits;  conditional E-value: 4.7e-48
    PF12345.3   1 lppeqkeleadykkelkekfgieFneLftitnlpikrfkeelekkgkleeYlklleeafneetveklmCrsllsvdwdGelydCdfnqmlelkl...................kkekktlkdlleae.leereiavaehCygCtaGaGss 130
                  lpp+q++lea+yk+el+++fg++Fn+Lft+tn+pikrf+++l ++g+l++Y++ll ++fn +t++++mC+++lsv++dG+l+dCdfnq+l++++                   +++  ++ d+++++ l + +i+ ++hC+gCtaG Gss
  MMETSP0890-20130614|21200_1 275 LPPHQDALEAKYKEELQQHFGVTFNQLFTMTNMPIKRFADFLFRRGELQDYMSLLVRNFNMSTTDNIMCKDTLSVNYDGSLFDCDFNQQLQIPIkdatsnlemvkdgkdekilHQKGISIFDIQSTSdLLNMSITHDNHCFGCTAGMGSS 424
                  89*******************************************************************************************977777777776665554443444555666555478899*****************8 PP

>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   3.4e+03      87     150 ..      44      96 ..      38     109 .. 0.48
   2 !   40.0   0.0   1.5e-13     4e-10       2     143 ..     117     257 ..     116     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.2
                  CH.HHHHHHHHHTT-SEEEEEEESSSHHHHHHCCTCTS-HHHHHHHHHHHHHHSSETEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04055.16  87 lpdeeileelaelgvdrvslglesgdeekvlklmrrghtfeevlealeklreagikrvvdfivg 150
                  l+ ee+l+e+     + ++l ++ + e+    +m    ++ee ++  ++l ++g++   df + 
  MMETSP0890-20130614|21200_1  44 LI-EETLKEMET--DTEFQLTAKRLREQ-GAARM----SLEEKKQRRRALDALGVP---DFSTF 96 
                  55.555555554..35555555555554.33333....344444444444455555...44444 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 1.5e-13
                  S-CCEESS--TT-CCCTCHHHHHHHHHHHHHHHHHHHHHHTCS-.CEEEEE---SGGGTTTHHHHHHHHHHCHEECCEEEEEE-SSCH.....HHHHHHHHHTT-SEEEEEEESSSHHHHHHCCTCTS-HHHHHHHHHHHHHHSSET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04055.16   2 vvtrgCnlrCsfCanpetsregrgrsrsveeileevkelkeekg.vkevtltGgepllypdfvellerlaklalpgirialetngtlpd....eeileelaelgvdrvslglesgdeekvlklmrrghtfeevlealeklreagikr 143
                  +v   Cn +C +C++     ++r +++  +   + +++l  +    +++ +tGg p l+p f  l++ ++ l+ ++++i   +n t ++    e+++e lae +  r+  +l  ++ + v+ +  +++ fe+ ++ l+kl+++g+ +
  MMETSP0890-20130614|21200_1 117 NVGLYCNQACNHCHVES--SPKRTEMMNNQVADRCIEIL-DKSPsLHTLDITGGAPELNPSFRHLVLGARSLN-KKLEIIDRCNLTVLSepgqEDLAEFLAE-HNVRIVASLPCYSAKNVDMQR-GKGVFERSVAGLRKLNDLGFGV 257
                  67778***********8..56666666666666666666.45555***************************6.9999999999999999996666666666.55************9888888.99*****************985 PP

>> PF13353.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   9.6e-07    0.0026      15      84 ..     122     187 ..     115     230 .. 0.76
   2 ?   -3.1   0.0       2.5   6.8e+03      89     123 ..     349     387 ..     340     393 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.6e-07
    PF13353.1  15 CnlkCkgCfnketwdfkkgkkftkelleeiiedlkn.ekiegltllGGEPllpenaeallellkrvkeelp 84 
                  Cn +C+ C+ +++  +k+ + +++++ ++ ie l++ ++  +l ++GG P l   ++ +  l+  +++ + 
  MMETSP0890-20130614|21200_1 122 CNQACNHCHVESS--PKRTEMMNNQVADRCIEILDKsPSLHTLDITGGAPEL---NPSFRHLVLGARSLNK 187
                  *********7765..6699999************9768999*********99...5555555555555444 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.5
    PF13353.1  89 wlytGytle.ellke...eteellkeldvlvdgkfeesl 123
                  + y G+ ++ +++++    +++  ++l+++ dgk e+ l
  MMETSP0890-20130614|21200_1 349 VNYDGSLFDcDFNQQlqiPIKDATSNLEMVKDGKDEKIL 387
                  566666666444444666677777777777777766555 PP

>> PF13394.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.3e-06    0.0091       8      77 ..     122     186 ..     120     221 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.3e-06
    PF13394.1   8 CnlkCkgCdtkstwdfnggkpftaealaeiie.lkekkikpqgvvltGGEPllqlneeallelikalkeeg 77 
                  Cn +C+ C+ +s  + +  + +++++ ++ ie l+++++ +  + +tGG P l+   + + +l+   ++  
  MMETSP0890-20130614|21200_1 122 CNQACNHCHVES--SPKRTEMMNNQVADRCIEiLDKSPSLHT-LDITGGAPELN--PS-FRHLVLGARSLN 186
                  *********966..7778888999999999998777777655.********944..33.555555555554 PP

>> PF03791.8  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0011         3      23      33 ..     284     294 ..     278     298 .. 0.92
   2 ?    2.6   0.0     0.026        72      23      43 ..     358     378 ..     358     380 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0011
    PF03791.8  23 vkykeeLsrpf 33 
                  +kykeeL+++f
  MMETSP0890-20130614|21200_1 284 AKYKEELQQHF 294
                  59********8 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.026
    PF03791.8  23 vkykeeLsrpfdEAmtflrei 43 
                  + + ++L+ p++ A++ l+++
  MMETSP0890-20130614|21200_1 358 CDFNQQLQIPIKDATSNLEMV 378
                  6799***********999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.97
# Mc/sec: 1047.48
//
Query:       MMETSP0890-20130614|21208_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       968  (0.0708016); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.92
# Mc/sec: 1148.69
//
Query:       MMETSP0890-20130614|21212_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 612.04
//
Query:       MMETSP0890-20130614|21223_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-32  112.6   0.2    2.5e-32  112.0   0.1    1.2  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.1   1.9e-36   2.5e-32       2     199 ..     116     326 ..     115     337 .. 0.84

  Alignments for each domain:
  == domain 1    score: 112.0 bits;  conditional E-value: 1.9e-36
                  HHHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHH....HHHTT.TTCGCS-SCCEEEECCCCE----...-S-B-----EEEEEEEEEETTEEEEEEEEEE--..GHH-HHHHHHHHHHHHHHHHHH-----BHHHHHHHHHHHHHT..-E...........E--S-------..-SS-S...---SSTT---B-----EEEE--.----TTTS-EEE-BE CS
   PF00557.19   2 lirkAgriaaaaleavlreikpgvterelaalieaa....lkreg.akgqafppivasgenaallhytp...ndrvlkdgdlvlldvgaeydgyasditrTvvvg..ftpeqrelyeavleaqeaaiaavkpGvtlseihaaaekvleegGlse..........ffphglGHgvgl.evhde...psvsrkgrgrkleegmvftieP.giyfapgeggvried 199
                  ++r+A ++++ +++++ + ikp ++   +++ ie+     ++++g ++g++fp  +++++n+ ++hytp   +d vl  +d++ +d+g+++dg ++d+++Tv++   f      l+eav+ea e +++a+   v+l+++++a+++++e++   e          +++++ GH++g  ++h     p v+ +g+++k+eeg++++ie+ g+    g+ g  ied
  MMETSP0890-20130614|21223_1 116 KLRHASEVHRHVRRHAQSFIKPDISLTAMCETIENMnrklVQENGlKAGIGFP--TGCSINHIAAHYTPnpgGDVVLGYDDVMSIDFGTQIDGRIIDCAWTVAFNpkF----DPLLEAVREATETGLKACGIDVRLCDVGEAIQETMESYEV-ElesgktvpvrCVRNLNGHSIGPyQIHAGksvPIVK-GGDSTKMEEGEIYAIETfGTT---GR-GHVIED 326
                  79**************999***************775453355559*******..9999999999**995544666***************************96455....55**********************************9633.123456778888899*******77***884445454.779*************93333...44.777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       787  (0.0575629); expected 273.4 (0.02)
Passed bias filter:                      555  (0.0405939); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.45s 00:00:01.37 Elapsed: 00:00:00.88
# Mc/sec: 1200.90
//
Query:       MMETSP0890-20130614|21227_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-42  145.7   6.5    1.8e-42  145.2   4.5    1.1  1  PF14257.1 Domain of unknown function (DUF4349)
  ------ inclusion threshold ------
      0.069   11.6   0.4      0.094   11.2   0.2    1.1  1  PF08317.6 Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> PF14257.1  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   4.5   2.6e-46   1.8e-42      18     213 ..      87     290 ..      62     294 .. 0.86

  Alignments for each domain:
  == domain 1    score: 145.2 bits;  conditional E-value: 2.6e-46
    PF14257.1  18 apaaaaeaaadeaesa.eapadaaaaaadrkiirtaslslev.kdvdeaaaalralveaagGyvesssesssedegdrrsasltlRvPaerfdafldele.......glgkvesrsisaeDVTeeyvDleaRlkaleaseerllallekaetvedllevereLsrvqaeiEsleaqlryLddrvaystvtvelreeeaatpaeeg 213
                  a++ + +++ ++++ + +++++++ +++++ ++r+a++++ +  dv ++a+a+ +++e+ gGyve+s+ + ++++++ ++a + lRvP+e+++a+l+e++       +  ++es  +s++DVT+eyvD  aR+k+l+a +++l +l+++a++v+d+l+v reL++v +++E+ +a+++yL+++ ++st+++++r ++++ p++++
  MMETSP0890-20130614|21227_1  87 AAEEGVGEMMMDRDIGmPQESSSDVEVTEKLLVRRADIQIVTkIDVFAVATAAITMIERWGGYVENSRNE-NSESSSIKRAWVLLRVPTEKYEATLKEFTmngiggtSRDDIESVAQSSNDVTAEYVDAAARVKTLQAARDQLYQLMTSASSVQDVLSVRRELTKVTQDLEARQARMNYLSKQASFSTIDLNIRSQRRPGPPKPS 290
                  4444445544444444167777788889999********999569***********************85.77899***********************9997775333699***********************************************************************************9988887765 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.4e-05     0.094     171     246 ..     196     276 ..     181     283 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
    PF08317.6 171 klelinsilpklrekkealkeelasLrqlkde.....leecdseeleklreeLssleekieekrkkleeleeelqelkkki 246
                  ++e + +  +++++ +     ++++L++++d+     +   + +++ ++r eL+++++++e+++  ++ l ++ + +++++
  MMETSP0890-20130614|21227_1 196 DIESVAQSSNDVTAEYVDAAARVKTLQAARDQlyqlmTSASSVQDVLSVRRELTKVTQDLEARQARMNYLSKQASFSTIDL 276
                  444555555556666666667777777777777666556667899***********************9999987666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.63
# Mc/sec: 1122.10
//
Query:       MMETSP0890-20130614|21236_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-05   22.6   1.1     0.0089   15.2   0.1    2.9  3  PF13202.1  EF hand
     0.0013   17.8   0.0       0.13   11.5   0.0    2.7  2  PF00036.27 EF hand
     0.0076   15.9   0.2       0.44   10.4   0.0    2.9  3  PF13405.1  EF-hand domain
     0.0092   15.5   0.1        5.1    6.6   0.0    2.3  2  PF09769.4  Apolipoprotein O
  ------ inclusion threshold ------
      0.024   14.1   0.3       0.56    9.8   0.0    2.6  2  PF07870.6  Protein of unknown function (DUF1657)
       0.04   13.4   0.7       0.43   10.1   0.2    2.7  2  PF13833.1  EF-hand domain pair
      0.043   12.9   0.2        6.1    5.9   0.1    2.2  2  PF07195.7  Flagellar hook-associated protein 2 C-terminus
      0.089   12.8   0.0       0.47   10.5   0.0    2.2  3  PF13499.1  EF-hand domain pair
      0.093   12.0   1.0        5.6    6.2   0.0    3.0  3  PF06738.7  Protein of unknown function (DUF1212)


Domain annotation for each model (and alignments):
>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0091        14      11      23 ..       1      13 [.       1      15 [. 0.82
   2 !   15.2   0.1   5.8e-06    0.0089       8      22 ..      34      48 ..      34      51 .. 0.89
   3 ?   -2.7   0.0       2.6     4e+03      16      21 ..     250     255 ..     249     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0091
                 S----B-HHHHHH CS
    PF13202.1 11 NgDGkIsreELkr 23
                 + DGk+s+e+ k+
  MMETSP0890-20130614|21236_1  1 DADGKLSFEDAKQ 13
                 67*******8766 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 5.8e-06
                 H--S----B-HHHHH CS
    PF13202.1  8 fDlNgDGkIsreELk 22
                 +D++gDGkIs +E k
  MMETSP0890-20130614|21236_1 34 LDADGDGKISWSEAK 48
                 6**********9965 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 2.6
                  B-HHHH CS
    PF13202.1  16 IsreEL 21 
                  +s++EL
  MMETSP0890-20130614|21236_1 250 LSKQEL 255
                  89***9 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.034        52      12      24 ..       1      13 [.       1      17 [. 0.84
   2 !   11.5   0.0   8.3e-05      0.13       9      24 ..      34      49 ..      34      53 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.034
                 TTSSEBEHHHHHH CS
   PF00036.27 12 DgdGkIsfeEfke 24
                 D dGk+sfe+ k+
  MMETSP0890-20130614|21236_1  1 DADGKLSFEDAKQ 13
                 78*******9665 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 8.3e-05
                 HCTTTSSEBEHHHHHH CS
   PF00036.27  9 fDkDgdGkIsfeEfke 24
                 +D DgdGkIs +E ke
  MMETSP0890-20130614|21236_1 34 LDADGDGKISWSEAKE 49
                 59*********99666 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14   2.1e+02      12      25 ..       1      14 [.       1      20 [. 0.84
   2 !   10.4   0.0   0.00029      0.44       9      24 ..      34      49 ..      32      57 .. 0.85
   3 ?   -3.7   0.0         9   1.4e+04      17      27 ..     176     186 ..     175     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.14
                 -----B---HHHHH CS
    PF13405.1 12 dgdGkidaeELrda 25
                 d dGk+++e+ +++
  MMETSP0890-20130614|21236_1  1 DADGKLSFEDAKQI 14
                 79*******98775 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00029
                 C-------B---HHHH CS
    PF13405.1  9 fDkdgdGkidaeELrd 24
                 +D dgdGki+++E + 
  MMETSP0890-20130614|21236_1 34 LDADGDGKISWSEAKE 49
                 7***********9665 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 9
                  B---HHHHHHH CS
    PF13405.1  17 idaeELrdaLr 27 
                  ida+ L+++++
  MMETSP0890-20130614|21236_1 176 IDAKKLIKVIK 186
                  89999999987 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0034       5.2      60     100 ..      44      83 ..       9      85 .. 0.87
   2 !    6.6   0.0    0.0034       5.1      55     130 ..     117     194 ..     114     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0034
    PF09769.4  60 avedavntvksrvldtersvtstvaslkpppeellPgliyi 100
                  + e a + + +++++ e++vt+ +++lkp ++++l  +++i
  MMETSP0890-20130614|21236_1  44 WSE-AKEGARTAFHQCEEKVTQLITKLKPYRNSILCTGGFI 83 
                  444.4488999**********************99888887 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0034
    PF09769.4  55 eeklsavedavntvksrvldtersvtstvaslkpppeellPgl..iyilvaglaGsIlarnRsivlRlatPlafglla 130
                  +  +++ ++a+ +  +   +   +++++v+s ++p+e l+ ++  ++ l  +l G ++a     +++++    +gl a
  MMETSP0890-20130614|21236_1 117 AASYQRGKKAYAANAPELKEAAAKIKNEVTSAQDPKEALIKNSstLATLMNALKGIFVAIDAKKLIKVIKSAYVGLSA 194
                  66788999999999************************7776522789999999999998888888888777777666 PP

>> PF07870.6  Protein of unknown function (DUF1657)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00037      0.56      27      49 ..      50      72 ..      46      73 .. 0.91
   2 ?    1.6   0.1      0.13     2e+02      29      48 ..     124     143 ..     121     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00037
    PF07870.6 27 eAKqmYeqaaeqleevindLkpr 49
                  A ++++q+ e++ + i++Lkp+
  MMETSP0890-20130614|21236_1 50 GARTAFHQCEEKVTQLITKLKPY 72
                 5889*****************98 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.13
    PF07870.6  29 KqmYeqaaeqleevindLkp 48 
                  K++Y  +a +l+e  +++k+
  MMETSP0890-20130614|21236_1 124 KKAYAANAPELKEAAAKIKN 143
                  99**************9997 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00028      0.43      33      46 ..      33      46 ..       2      50 .. 0.72
   2 ?   -2.9   0.0       3.2   4.8e+03       9      30 ..     133     155 ..     133     157 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00028
    PF13833.1 33 efDtdgdGkisfeE 46
                  +D+dgdGkis+ E
  MMETSP0890-20130614|21236_1 33 WLDADGDGKISWSE 46
                 58**********98 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.2
    PF13833.1   9 eLkralallglkglseee.vdil 30 
                  eLk+a+a+++ + +s+++  ++l
  MMETSP0890-20130614|21236_1 133 ELKEAAAKIKNEVTSAQDpKEAL 155
                  79999988877767777666655 PP

>> PF07195.7  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.004       6.1      69     109 ..     133     174 ..     124     176 .. 0.79
   2 ?    5.1   0.0    0.0072        11     136     216 ..     176     250 ..     173     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.004
    PF07195.7  69 elnaltke.edeiekeekaksGaLagdstlrnilsqLrnsls 109
                  el++  ++ ++e++ ++  k+++ ++ stl +++++L+  + 
  MMETSP0890-20130614|21236_1 133 ELKEAAAKiKNEVTSAQDPKEALIKNSSTLATLMNALKGIFV 174
                  555555555689999**********************99876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0072
    PF07195.7 136 lDeekLkkalkenpssveklFsgstsqsktvtsdsglatqleqllkeyvkssngalqtkeenltkqikdldkkiedlnkrl 216
                  +D +kL k++k+   ++ + F+g  s+s++     g+  +l +++  +++s+   +  +++ + ++++d++    d++++l
  MMETSP0890-20130614|21236_1 176 IDAKKLIKVIKSAYVGLSAAFAGVLSESAA---RLGIGVSLGDSIATTINST---FGPLIKRYLTRLRDKTLADPDIQEAL 250
                  8**********************7665544...5899999999999999888...55555555555555555555555555 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031      0.47      12      61 ..       1      46 [.       1      51 [. 0.77
   2 ?    7.2   0.0    0.0032       4.9       9      26 ..      34      51 ..      29      66 .. 0.66
   3 ?   -3.1   0.0       5.2   7.9e+03      17      42 ..     256     288 ..     253     295 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
    PF13499.1 12 dgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeE 61
                 d dg+l+ e+ ++++  ++++ +d  + ++     + lD +gdG++s++E
  MMETSP0890-20130614|21236_1  1 DADGKLSFEDAKQIALTTSEYVTDTAKAQL----RAWLDADGDGKISWSE 46
                 569999999999999999966554444443....55678*********99 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0032
    PF13499.1  9 lDkdgdgyldkeeLlrll 26
                 lD dgdg+++  e ++ +
  MMETSP0890-20130614|21236_1 34 LDADGDGKISWSEAKEGA 51
                 566666666666666555 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 5.2
    PF13499.1  17 ldkeeLlrllkhlgsels.......deevrevl 42 
                  +d + L+ +l++l s ls        + v++v+
  MMETSP0890-20130614|21236_1 256 IDDATLESWLDALISFLStclgvyvAHRVDDVI 288
                  778888888888777666666555555555555 PP

>> PF06738.7  Protein of unknown function (DUF1212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.52   7.9e+02      86     115 ..      57      86 ..      45     106 .. 0.66
   2 ?    2.6   0.1     0.046        70     105     148 ..     192     236 ..     165     240 .. 0.80
   3 ?    6.2   0.0    0.0037       5.6     124     163 ..     263     301 ..     261     325 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.52
    PF06738.7  86 eaqekLdeikrkkpryprwlvvlaaglaca 115
                  + +ek  ++ +k ++y++ + + +  +ac 
  MMETSP0890-20130614|21236_1  57 QCEEKVTQLITKLKPYRNSILCTGGFIACF 86 
                  556666666666666666666666655553 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.046
    PF06738.7 105 lvvlaaglacaafavl.fggdwidvliaflagllggllrvvlakr 148
                  l +++ag+ + + a+l +g ++ d + + + + +g l++++l+++
  MMETSP0890-20130614|21236_1 192 LSAAFAGVLSESAARLgIGVSLGDSIATTINSTFGPLIKRYLTRL 236
                  456677888888888889999999999999999999999998875 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0037
    PF06738.7 124 dwidvliaflagllggllrvvlakrklnpfvaealaafla 163
                  +w+d+li+fl ++lg ++++ +  + ++ + a +++a la
  MMETSP0890-20130614|21236_1 263 SWLDALISFLSTCLGVYVAHRVDDV-IYLYSACVTGATLA 301
                  7******************998876.34444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      516  (0.0377414); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.64
# Mc/sec: 1441.56
//
Query:       MMETSP0890-20130614|21254_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-27   97.0   0.0    1.3e-27   96.8   0.0    1.1  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   9.3e-32   1.3e-27       8     154 ..      18     167 ..       9     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 9.3e-32
   PF00160.16   8 skGrivieLfedkaPktvenFlklakeg......fYdgtkfhr.vikgfmiqgGdpsgkgangeekkaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekiea.vetde.kpeknvkiksvg 154
                  + Gri++eL ++  P+t+enF  l+  g       Y+g++f r + +g  i gGd+ + g   +++  ++ +++dE   +   h ++G+l+ a+ g   ++ngsqF+Itl+++ph+Dg++++FG+V  g+dv+  + + v  ++  p+k ++i ++g
  MMETSP0890-20130614|21254_1  18 KVGRIEFELLDELLPVTCENFKLLCS-GfapsgfRYKGSHFIRlMARGAAIMGGDVATAGG--SHSAWKQRYYADEG--FFVPHsQAGILSSANAG--IDTNGSQFYITLKECPHMDGRCVAFGRVATGYDVITGLIKdVYMQRgIPTKSITILDAG 167
                  37***********************5.55666679********6677799*****776655..22244455688998..34555499******998..69*********************************987764555557888889999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 769.98
//
Query:       MMETSP0890-20130614|21276_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   13.3   0.7       0.21   11.5   0.0    2.1  2  PF05968.6 Bacillus PapR protein


Domain annotation for each model (and alignments):
>> PF05968.6  Bacillus PapR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.14   1.9e+03      31      43 ..     267     279 ..     258     281 .. 0.78
   2 ?   11.5   0.0   1.5e-05      0.21      10      45 ..     324     359 ..     323     361 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.14
    PF05968.6  31 ishddqEvQLAsd 43 
                   ++++++ QLA  
  MMETSP0890-20130614|21276_1 267 TTNNNDDDQLAAS 279
                  48999999*9976 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 1.5e-05
    PF05968.6  10 ltlAmlwGislgDtalekdQvishddqEvQLAsdlP 45 
                  +t+A +w   + D al++ Q +  ++ E QL   +P
  MMETSP0890-20130614|21276_1 324 ITIARTWAPLIVDVALDQHQSLIRNNLEAQLDASIP 359
                  69999999999********************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.93
# Mc/sec: 953.39
//
Query:       MMETSP0890-20130614|21285_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.36s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 209.21
//
Query:       MMETSP0890-20130614|21297_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.87
# Mc/sec: 209.34
//
Query:       MMETSP0890-20130614|21295_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-26   90.9   8.5    4.1e-26   90.6   5.9    1.0  1  PF01158.13 Ribosomal protein L36e


Domain annotation for each model (and alignments):
>> PF01158.13  Ribosomal protein L36e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   5.9     3e-30   4.1e-26      13      98 ..      11      99 ..       3     100 .. 0.93

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 3e-30
   PF01158.13 13 GhkvtkkkkkprpsrrkgklskrtklvrelirevaGfapyEkrvieLlkvskd...kralkfakkrlGthkrakrkreelsnvlaaqrk 98
                  h+v k++k  rp++rkg +skrt +vr++i+evaG++pyEkr+++++k++ +   kr  k+ak+rlGthkra +kre++++++a+ r 
  MMETSP0890-20130614|21295_1 11 SHEVQKREKILRPKHRKGSKSKRTSVVRDVIQEVAGLSPYEKRLLDMIKTGGAsseKRMYKYAKQRLGTHKRAVKKREHMKDIYAQIRA 99
                 589999*******************************************9765555****************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       757  (0.0553686); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 361.19
//
Query:       MMETSP0890-20130614|21332_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-52  176.2   2.3    7.5e-52  175.5   1.6    1.4  1  PF00122.15 E1-E2 ATPase
    2.8e-09   36.2   0.0    7.4e-09   34.8   0.0    1.7  1  PF00690.21 Cation transporter/ATPase, N-terminus
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.028   14.8   0.0    1.5  1  PF00702.21 haloacid dehalogenase-like hydrolase
      0.019   15.0   0.1      0.074   13.1   0.0    1.9  2  PF12710.2  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   1.6   2.2e-55   7.5e-52       1     229 [.     103     328 ..     103     329 .. 0.96

  Alignments for each domain:
  == domain 1    score: 175.5 bits;  conditional E-value: 2.2e-55
   PF00122.15   1 viilavllnalvefvqeykaekalesLkrlspetaatvirdgkeqeipakeLvvGDiviiktGdrvpaDgrlieagslevdesalTGEslpvtksvelaergnkvfsgtvvlsgegkaiVtatgketeigkiarlvqeaks.aetplqkkldrlaklllilvlavailifiislvtdvaeklleallialallvvaiPegLplavtltlavgaqrlakkgvlvrklsaiE 229
                  +i++++++na+++f++e  a  ++es+k+  ++   +v rdg+ ++ip+ eLv+GD+++++ Gd vpaD+  +e  s++vd++alTGE  p +    + + +  ++sg++v+sg+ +  V++tg  te+g+ + l+q++++ +++ ++k++ ++ +  +++++++ i+ifi+ ++  ++e+++++l++++a+l++++P++Lp+++++tla+gaq++ak++++v +l++++
  MMETSP0890-20130614|21332_1 103 IIAALLTINATIGFYEEWEALLKVESIKSSLAPM-SVVKRDGEFTKIPTAELVPGDVIFLRGGDAVPADVDFLEGDSMAVDTAALTGEPFPRKIP--DSKGHKRAMSGCMVVSGNSYLLVQRTGIYTEMGSATMLMQQSTKpTQSVFEKSIIQVCERVMFVAVLILIAIFIVEWF-FRHENFITILTTCMAILIASVPVALPVVMQVTLALGAQEMAKQQAIVTHLTSMQ 328
                  699******************************8.9**************************************99*************888887..7889999********************************99999899*****************99999999966555.5*************************************************9986 PP

>> PF00690.21  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.2e-12   7.4e-09      19      68 ..      43      91 ..      33      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 2.2e-12
   PF00690.21 19 nGLtsdeaaerlkkyGpNelpepkkksllrlflrqfkdplvilLlvaaiv 68
                 +GL+s+++aer + yG Ne+ ++k  +++  +l+q+++ + i+  +  ++
  MMETSP0890-20130614|21332_1 43 KGLDSATVAERIEMYGTNEI-PEKIIHWYNVLLKQLTSSMAIMIEITLVL 91
                 8*******************.**********************9887665 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.3e-06     0.028       1      47 [.     333     393 ..     333     516 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.3e-06
                  ECEEEEECCTTTBETHHHH............HHHHHHHHHH..HHHCCCCCSCCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx............xxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
   PF00702.21   1 iktvvfDktGTLtegepsv............lgnkaalala..aaletgsehpigkavvaa 47 
                  ++++++DktGTLt+ + +v             ++  +l++   a+ +   + pi++a+ + 
  MMETSP0890-20130614|21332_1 333 MNVLCSDKTGTLTTAKIQVfydliwtppesgFDRDHILEWCavASNPHAEDDPIDVAILRS 393
                  699****************999999998888666666666644555555555555555544 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.63   2.1e+03     106     122 ..     201     222 ..     178     234 .. 0.78
   2 ?   13.1   0.0   2.2e-05     0.074       1      91 [.     336     443 ..     336     460 .. 0.43

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.63
                  TT.....EEEE-SS-HHHHHHH CS
    PF12710.2 106 lr.....vvvlsgdprliakpv 122
                  ++     + v+sg++ l+++++
  MMETSP0890-20130614|21332_1 201 HKramsgCMVVSGNSYLLVQRT 222
                  333333499*****99999887 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.2e-05
                  EEE------B---..................HHHHHHHHH--H...HHH...........................HHH.HHHHHHHHHT-HHHH----HHHHHHHHHH...................H--B CS
    PF12710.2   1 avFDkDGTLteddtdflryllk.........lldvlgealakdaslaslkdst...................cltlsdp.kdllellaeyggirviglaarylealake.ieea...........klfegfi 91 
                  +++Dk+GTLt+ + +++ +l+                                                    ++l+ +  ++ + +     +r+ +   + + +++ e + ++           k+++g+i
  MMETSP0890-20130614|21332_1 336 LCSDKTGTLTTAKIQVFYDLIWtppesgfdrD--------------------HilewcavasnphaeddpidVAILRSFrDTFSQDYN----ERIKRYTVKKFVGFTPEtKRTVvyashpkhgdiKISKGLI 443
                  59***********4333333334433333321....................122221122221111112222222222112333333....3333333333333333333333555555666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       927  (0.0678028); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.78
# Mc/sec: 1588.35
//
Query:       MMETSP0890-20130614|21348_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-25   89.8   0.0    2.5e-25   88.9   0.0    1.4  1  PF00149.23 Calcineurin-like phosphoesterase
     0.0003   20.5   0.0    0.00072   19.3   0.0    1.7  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   3.7e-29   2.5e-25       4     199 ..     285     596 ..     283     598 .. 0.96

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 3.7e-29
                  EEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH................................................................................................................................................SCCHHHHHHHHHHHHTTSSEEEE-SSS CS
   PF00149.23   4 lvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi..............................................................................................................................................gggelfgpdalekllekygvdlvlrGHeH 199
                   v+gD+Hg+l+dl+ ++ ++ +++++  + ++lflGD+vdrg  s+e+  +l  l+lk  +p++v+llrGNHE + +n    ++ e++                        + +   + ++ + g++++++ + +f++lpl+a++d +++++Hg++ +++     +                                                                                                                                              gg + fg +a + +l++ g+  + r+He 
  MMETSP0890-20130614|21348_1 285 YVFGDVHGNLEDLNFFADHVWKLGVSLMAGNLLFLGDYVDRGLSSLEVVSYL--LALKAIEPNKVWLLRGNHETRDVNGWKEHYGERS------------------------FLWQCENRFGIDIGTRVWDALNACFDRLPLAAIIDDDVFCVHGGFPRRPSADALRaiaptlysqldtihspsphshvtennkigslspsnkggffcddaasqknatantippsplsrrisrsgsilrnarssshgleslsrldlldlvpaaisinppdpecepilhqmasecvwsdpamedqenfldqdgfgesmrgGGTVCFGQKAIDAFLLETGCSFIMRAHEA 596
                  59***********65*************************************..***********************99999999988........................456677789************************************9998877777*************************************************************************************************************************************************************************95 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.1e-07   0.00072       5     145 ..     286     624 ..     284     636 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.1e-07
    PF12850.2   5 iiSDlHgnldaleavledi.k.e....vdlilhaGDlvep....eevvell...edi...pvlavrGnhDeaelpkelavel............................llaaaaleie........gdrvllvhgtpls.........................................................................................................................................................vqsseeelaellkeagadlvflGH.tHkpkvekrggtlvvnpGsvgepregd.e 145
                  +++D+Hgnl++l+   +++ k +    +  +l++GD+v++     evv  l   ++i   +v  +rGnh+  +++  +++ +                            +        +        +d+v+ vhg +                                                                                                                                                           v ++++++++ l e g+++++ +H  H ++v   ++ +v+++ s    +++  +
  MMETSP0890-20130614|21348_1 286 VFGDVHGNLEDLNFFADHVwKlGvslmAGNLLFLGDYVDRglssLEVVSYLlalKAIepnKVWLLRGNHETRDVNGWKEH-YgersflwqcenrfgidigtrvwdalnacF--------DrlplaaiiDDDVFCVHGGFPRrpsadalraiaptlysqldtihspsphshvtennkigslspsnkggffcddaasqknatantippsplsrrisrsgsilrnarssshgleslsrldlldlvpaaisinppdpecepilhqmasecvwsdpamedqenfldqdgfgesmrgggtVCFGQKAIDAFLLETGCSFIMRAHeAHAYGVSLGKMATVFTVFSTSKDHHQGnM 624
                  79***********999999732255679999*****9995555567766663434446446********96654433322.124456667555555565555555555542........03333333388*******8766666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777776557777777777777777777777447777766777777777777766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.82
# Mc/sec: 2183.02
//
Query:       MMETSP0890-20130614|21364_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-13   48.2   5.4    8.1e-13   47.7   3.7    1.2  1  PF13639.1  Ring finger domain
    4.9e-10   38.9   4.3    6.9e-10   38.4   3.0    1.2  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    3.5e-08   33.3   4.2    7.5e-08   32.2   2.9    1.6  1  PF12678.2  RING-H2 zinc finger
    1.3e-06   27.8   5.7      2e-06   27.2   4.0    1.3  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
      9e-06   25.1   2.3    1.3e-05   24.6   1.6    1.2  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
     0.0002   20.6   1.1    0.00033   19.9   0.7    1.3  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
    0.00039   20.0   0.6    0.00065   19.3   0.4    1.4  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0006   19.3   2.9     0.0022   17.5   2.0    1.8  1  PF14446.1  Prokaryotic RING finger family 1
  ------ inclusion threshold ------
      0.011   15.6   5.2      0.019   14.8   3.6    1.4  1  PF12906.2  RING-variant domain
      0.046   13.3   2.9       0.08   12.5   2.0    1.4  1  PF00628.24 PHD-finger
      0.066   13.0   4.8       0.29   11.0   3.3    2.0  1  PF11793.3  FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   3.7   6.5e-16   8.1e-13       2      43 ..      47      88 ..      46      91 .. 0.95

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 6.5e-16
    PF13639.1  2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssnsCPlC 43
                 +C+iCl +l+ ++ v  l C H++HeeC+  wlr++ +CPlC
  MMETSP0890-20130614|21364_1 47 VCTICLNQLQIDDIVANLDCPHLYHEECILPWLRRKATCPLC 88
                 6********9899999************************** PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   3.0   5.6e-13   6.9e-10       4      44 ..      47      88 ..      44      90 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.6e-13
    PF13923.1  4 sCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiC 44
                 +C iCl++l+    v+ + C Hly+++Ci  wl++ k++CP+C
  MMETSP0890-20130614|21364_1 47 VCTICLNQLQIddIVANLDCPHLYHEECILPWLRR-KATCPLC 88
                 8******9954459999******************.******* PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   2.9     6e-11   7.5e-08      16      74 ..      37      88 ..      22      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 6e-11
    PF12678.2 16 dised.....nCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlc 74
                 d+++d     +C iC n+l       +     d+  va   C H +H +Ci  Wl+++ tCPlc
  MMETSP0890-20130614|21364_1 37 DLNSDegeapVCTICLNQL-------QI----DD-IVANLDCPHLYHEECILPWLRRKATCPLC 88
                 44444344445********.......22....33.566678*********************** PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   4.0   1.6e-09     2e-06       1      41 []      48      88 ..      48      88 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.6e-09
                 -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20  1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41
                 C iCl+ +++ +    l+C H ++++Ci+ +l+  +k +CPlC
  MMETSP0890-20130614|21364_1 48 CTICLNQLQIDDivANLDCPHLYHEECILPWLR--RKATCPLC 88
                 *******9998877899****************..8888**** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.6   1.1e-08   1.3e-05       4      47 ..      47      92 ..      44      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.1e-08
    PF13920.1  4 tCvvCler...eadvlllpCgHlclCeeCaerllkrkkkCpiCrspi 47
                  C++Cl++   +  v+ l C Hl   eeC   +l+rk++Cp+C  +i
  MMETSP0890-20130614|21364_1 47 VCTICLNQlqiDDIVANLDCPHL-YHEECILPWLRRKATCPLCAVTI 92
                 6******86433448889*****.*******************9887 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.7   2.7e-07   0.00033       2      56 ..      37      88 ..      36      89 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.7e-07
                 XXXXXXXXXX-.B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT--B------- CS
    PF11789.3  2 dlaveeerisl.kCpltlkpfkePvtskkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56
                 dl+ +e++++  + +l + ++ + v +  C+H + +e Il  l  ++k+ CP+  C
  MMETSP0890-20130614|21364_1 37 DLNSDEGEAPVcTICLNQLQIDDIVANLDCPHLYHEECILPWL--RRKATCPL--C 88
                 555555555541336777788899*******************..88999**9..7 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   5.2e-07   0.00065      33      82 ..      43      93 ..      38      96 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.2e-07
    PF12861.2 33 GtcpsckfpGddcpl...vlGk.ckhnfhlhcilkwletetskglcpmcrqtfk 82
                 G  p c++  ++  +   v    c h +h+ cil wl +   k  cp+c  t+ 
  MMETSP0890-20130614|21364_1 43 GEAPVCTICLNQLQIddiVANLdCPHLYHEECILPWLRR---KATCPLCAVTID 93
                 56666666666654322155546**************87...567999977765 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.0   1.8e-06    0.0022       7      48 ..      47      89 ..      42      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.8e-06
    PF14446.1  7 rCavCgkklkdkddivvCpeCgapyHreC...w.eeageCilascg 48
                  C++C ++l+  ddiv+  +C   yH+eC   w  ++++C l  c+
  MMETSP0890-20130614|21364_1 47 VCTICLNQLQ-IDDIVANLDCPHLYHEECilpWlRRKATCPL--CA 89
                 7********5.9*****************5555667777777..65 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   3.6   1.6e-05     0.019       1      47 []      48      88 ..      48      88 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
                 ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2  1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47
                 C iCl++ + ++ ++    C     l He+C+  Wl+  +k +C lC
  MMETSP0890-20130614|21364_1 48 CTICLNQLQIDD-IVANLDCPH---LYHEECILPWLR--RKATCPLC 88
                 9******88877.99*****99...***********9..7778*999 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.0   6.4e-05      0.08       1      48 [.      47      88 ..      47      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.4e-05
                 SBTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCC CS
   PF00628.24  1 rCkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeC 48
                 +C iC ++ + +++v   +C++ +H +C+ + l+++       +C+ C
  MMETSP0890-20130614|21364_1 47 VCTICLNQLQIDDIVANLDCPHLYHEECILPWLRRKA------TCPLC 88
                 5******9999******************99988333......47777 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.3   0.00023      0.29       5      45 ..      48      83 ..      44      97 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00023
                 -SSS--SS--------B--S-TT----B-SGGGHHHHHHHH CS
    PF11793.3  5 CgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslk 45
                 C iC+++      + di+  n  C + +H++C+  Wlr   
  MMETSP0890-20130614|21364_1 48 CTICLNQLQ----IDDIV-ANLDCPHLYHEECILPWLRRKA 83
                 999998876....55555.5899**************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 587.49
//
Query:       MMETSP0890-20130614|21368_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.79
# Mc/sec: 148.63
//
Query:       MMETSP0890-20130614|21380_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-08   31.5   0.4    1.4e-07   30.6   0.2    1.5  1  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.011   15.2   0.2      0.036   13.6   0.1    1.7  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.2     2e-11   1.4e-07       5      64 ..      10      69 ..       7      72 .] 0.92

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 2e-11
                 SEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEE CS
   PF00240.18  5 gktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhl 64
                 gk+i ++ +++dt+ +lK+ i+++ g +++++r      + +D+ tl++y i+dg  l+l
  MMETSP0890-20130614|21380_1 10 GKKIRVKCNEDDTIGDLKKLIAAQSGTRPEKIRIQKWYTIFKDHITLEDYEIHDGMGLEL 69
                 678999****************************9999999*************986666 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.2e-06     0.036      10      69 ..      10      68 ..       2      71 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.2e-06
                 S--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEE CS
    PF11976.3 10 gkevkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtid 69
                 gk++++k ++d+t+ +L++  + + g+ + e++r++      +++ t+ed++i dg  ++
  MMETSP0890-20130614|21380_1 10 GKKIRVKCNEDDTIGDLKKLIAAQSGTRP-EKIRIQKWYTIFKDHITLEDYEIHDGMGLE 68
                 89***************************.999998888888888999999999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 265.44
//
Query:       MMETSP0890-20130614|21387_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-65  220.8   0.0    2.5e-65  219.9   0.0    1.5  1  PF01702.13 Queuine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> PF01702.13  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.0   1.8e-69   2.5e-65       1     221 [.     308     545 .]     308     545 .] 0.98

  Alignments for each domain:
  == domain 1    score: 219.9 bits;  conditional E-value: 1.8e-69
   PF01702.13   1 eksieiqealgsDiimvldectpykasreraeksvertlrwakrcleah.kekkkqalfgivqGglyedlreesaeelae.dnfdgyaigGlsvgeekeemaelvkivtaelpedkprylmgvgtpedileavalGvDlfdcvlptrlArngtaltfeg.................klnlknarykedfspldeecdCytckkysraylhhLlkakemlastlltiHNlyyylklmqeiR 221
                  e+s+++q++lg+Dii++lde++py+++rer + sv  ++rw+ r+l+ah k+k+kqa++++++Gg++ +lr+ s+e+l++ + fdg+a+gG s+g++k+em +l++++++ lp++kp +++g+++p++   +v lGvD++d++ ptr+Ar+gt+++++                   l++k+ r++edf+p+d+     t   ysraylhhL+k++e la tl++iHN+++++  m+++R
  MMETSP0890-20130614|21387_1 308 ESSVAAQKKLGADIIIPLDELPPYHVTRERLAASVALSHRWMARSLAAHlKDKRKQAMYAVIHGGVDRQLRSHSVEYLTSlP-FDGFAVGG-SLGKDKSEMFHLLNFLMPLLPRNKPNHVLGIADPDSAKNLVPLGVDTMDSCNPTRVARHGTLFVSTAndhdnedahsapsskdgILRIKQGRFQEDFRPIDPFLPVDTLPGYSRAYLHHLFKQNEPLALTLASIHNIKFMNFYMADLR 545
                  7899***************************************************************************956.********.******************************************************************99**************************************************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:01.21
# Mc/sec: 1079.35
//
Query:       MMETSP0890-20130614|21399_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-20   73.3   0.0    1.3e-20   73.0   0.0    1.1  1  PF01221.13 Dynein light chain type 1


Domain annotation for each model (and alignments):
>> PF01221.13  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   9.4e-25   1.3e-20       9      79 ..      13      87 ..       8      90 .] 0.86

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 9.4e-25
                 EETTS-HHHHHHHHHHHHHHHH...H-S.SHHHHHHHHHHHHHHHH-S-EEEE-------EEES--SEEEEEE-- CS
   PF01221.13  9 kaadmseemqeeaielaaeale...kfe.eekeiAkhiKkefDkkygptWhcivGksFGsyvthekktfiYfyig 79
                   +dm++++ ++ai+ ++  l+    fe + ++i + iK++fD+k++p+Wh+i+G+s+Gs+vthe+++f+ f+i 
  MMETSP0890-20130614|21399_1 13 LPCDMPDDILRDAIQSVRAELDavdDFEaQGNDIVERIKHKFDEKWNPYWHVIIGRSYGSFVTHETRKFVSFKIY 87
                 578***********9998766522277755599***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.85
# Mc/sec: 253.73
//
Query:       MMETSP0890-20130614|21396_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.82
# Mc/sec: 584.48
//
Query:       MMETSP0890-20130614|21429_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-08   34.0   0.0    3.1e-08   33.5   0.0    1.2  1  PF01713.16 Smr domain


Domain annotation for each model (and alignments):
>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.3e-12   3.1e-08       1      73 [.      40     120 ..      40     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2.3e-12
                  EE-----HHHHHHHHHHHHHHHHHHHH.......-EEEEE----....---..HHHHHHHHHHTTHCECCEEEEEE------ CS
   PF01713.16   1 lDLHgltveeAlealeefldrarskgl.......rtvliitGkGshseggv..LkkavkewLdesrkaeevsafreaeprhG 73 
                  +DLH l +  A+ a++++++r r++ +       + ++ itG+Gshsegg   Lk+ ++ +Ld+ ++++ ++++re e++ G
  MMETSP0890-20130614|21429_1  40 IDLHELPAPVAKIAVRTAIERVRDRRAaantsmsEILTLITGRGSHSEGGEsiLKPVMTAMLDSTDFSD-ILKCREDEKNPG 120
                  8********************************77788************778*********7666655.467777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 456.60
//
Query:       MMETSP0890-20130614|21445_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.34s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 504.69
//
Query:       MMETSP0890-20130614|21438_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-09   37.0   0.2    1.1e-08   35.3   0.1    1.9  2  PF12804.2  MobA-like NTP transferase domain
    9.5e-05   21.6   0.0    0.00018   20.7   0.0    1.4  1  PF00483.18 Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> PF12804.2  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.6e-12   1.1e-08      14     136 ..      99     235 ..      87     277 .. 0.73
   2 ?   -2.6   0.0      0.68   4.7e+03      30     164 ..     532     560 ..     511     571 .. 0.51

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.6e-12
                  --GGG-B----BHHHHHHHHHTTS..EEEEE-SSHH...HHHHHHTTS.......-S-EE--.TT---------HHHHHH-.......--EEEEETT-TT--HHHHHHHHH--------EEEEESSSB..-TTEE-GG CS
    PF12804.2  14 gdKallplggkpllervldalraagvdevvvvtnde...eieaalegl.......gvtvved.edpgkgplaglaaalaaae....gadavlvlacDmPlltaellerllealaesgadvvvpryegerghpllfsrs 136
                  ++Kall++g+ +ll ++l+ l+ ag+++vv+v + +   +i ++l++l        +++v    ++ +g +a+l+aa + +     +  ++l++ +D+++   ++l+rll++  e++a  v ++ + + ++ l ++++
  MMETSP0890-20130614|21438_1  99 RPKALLRIGDATLLTHCLRGLATAGIRHVVIVLGGPtanAISEHLSALrwskyfsTLRLVDLgIHYTSGHAASLLAAGRLLLgptqKPRPFLLVGVDHVY-HHNILKRLLQKRSEQPAGLVLVEKNRRIIERLHLHSH 235
                  49******************************9886222444444444333333224444434566799999999999873323448899********88.99*********99999999988888887777755444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.68
                  HHHHHTTS..EEEEE-SSHHHHHHHHTTS-S-EE--TT---------HHHHHH-...--EEEEETT-TT--HHHHHHHHH--------EEEEESSSB..-TTEE-GGGHHHHHHHH.H-----THHHHH-EEEEE CS
    PF12804.2  30 vldalraagvdevvvvtndeeieaaleglgvtvvededpgkgplaglaaalaaaegadavlvlacDmPlltaellerllealaesgadvvvpryegerghpllfsrsllpaleallgdrgarrllralervalve 164
                  +l  l+                                                                                                           + + d ga+ +l + +r  lv+
  MMETSP0890-20130614|21438_1 532 ALTELAG----------------------------------------------------------------------------------------------------------QVADDTGAQVVLSENNRHLLVQ 560
                  3333333..........................................................................................................3344444444444444444444 PP

>> PF00483.18  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.7e-08   0.00018      15     135 ..      93     218 ..      87     225 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.7e-08
                  ---TTTS-GGG---CTT-HHHHHHHHHH.TT-SEEEEEEEGGGHHHHHHHTTTT-SS-.........B---EEESS--.......-HHHHH.HHHHHTS-TTS...EEEEEESS-B---.HHHHHHHHHHHHHC--EE CS
   PF00483.18  15 Pltrtlakklvpvlgkerliqytlsrlansgieeiivvltqehrflvaeqlregsklg........vevlialepegr.......gtAdAv.alaaelledeksdelvlvLagDhlikd.ayeeavkkaiekaadgtv 135
                  Pl  +l +k+++  g+ +l+ ++l  la +gi+ +++vl   ++  + e+l++   ++        v          +       g A ++ a +++ll+  +++  +l ++ Dh++ +  ++++++k  e+ a g+v
  MMETSP0890-20130614|21438_1  93 PLDTQLRPKALLRIGDATLLTHCLRGLATAGIRHVVIVLGGPTANAISEHLSALR-WSkyfstlrlV----------DlgihytsGHAASLlAAGRLLLGPTQKPRPFLLVGVDHVYHHnILKRLLQKRSEQPA-GLV 218
                  88889999999999999************************************96.77454443222..........22334555666665055666677777799*************444555555544444.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.40s 00:00:01.41 Elapsed: 00:00:01.13
# Mc/sec: 1345.32
//
Query:       MMETSP0890-20130614|21453_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-59  201.0   0.0    2.7e-59  200.3   0.0    1.3  1  PF00069.20 Protein kinase domain
    1.1e-32  113.0   0.0    1.7e-32  112.4   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    9.8e-06   25.3   0.9     0.0028   17.3   0.0    2.8  3  PF01636.18 Phosphotransferase enzyme family
    0.00085   18.3   0.0     0.0018   17.2   0.0    1.5  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0057   15.9   0.0      0.038   13.2   0.0    2.1  2  PF06570.6  Protein of unknown function (DUF1129)
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.025   13.7   0.0    1.4  1  PF01163.17 RIO1 family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3   0.0   1.2e-62   2.7e-59       5     260 .]      19     269 ..      16     269 .. 0.93

  Alignments for each domain:
  == domain 1    score: 200.3 bits;  conditional E-value: 1.2e-62
                  EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH....HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr....ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  e+lG+G++G+V +a++k++g  vAvKi++ +  ++ + + +++    E++++  l+H+niv+l++v+ + +++ lv+e+v+g +lf+ + ++gk+se e+k ++  ++ +++y+H +giiHrDLKpeN+L++ ++++k++DFGl+k +  +k ++ ++tlvgt+ Y+APE+  ++ +y++kvD Ws+Gv+ly +l  ++p++++   ++ ++i  +  ++ + +        +++++l+++ll+++p++R++++ + k+ wl
  MMETSP0890-20130614|21453_1  19 EELGRGASGVVRRAERKSDGVGVAVKIIDVRALRMMNGQFSISrlcrEVQVMLGLKHKNIVELYGVYSDGNQVRLVMELVNGIELFEEILSRGKFSEGEAKPVFGALCAAVSYMHGKGIIHRDLKPENVLVS-EDVVKVVDFGLSKLVaaHKGGSAARTLVGTPSYLAPEIEDENHDYDEKVDAWSIGVTLYVMLIARFPVYKR--SQDGNIIGLEICPEFDLS--------PQAQSLLRRLLDPNPNTRCSVAAASKDVWL 269
                  78*****************************9999888877778899***************************************98888*****************************************.999**********999999999***********************************************99..566666776666555554........789*******************99999885 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   7.5e-36   1.7e-32       5     205 ..      19     217 ..      16     260 .. 0.88

  Alignments for each domain:
  == domain 1    score: 112.4 bits;  conditional E-value: 7.5e-36
                  EEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH.....HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GT CS
   PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee.....keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgesp 205
                  ++lG+Ga G V +++ k    ++ v VavK+++ +a ++       +++++e+++m  lkh+niv+l+gv+++++++ +v+e+v+g +L e + ++   k++  +   +   ++ +++y++ k ++HrdL   NvL++ e+vvk+ DfGL++ +  ++  ++ ++      ++apE+ +e++ + +k D Ws Gv+l+ ++     p
  MMETSP0890-20130614|21453_1  19 EELGRGASGVVRRAERK----SDGVGVAVKIIDVRALRMMngqfsISRLCREVQVMLGLKHKNIVELYGVYSDGNQVRLVMELVNGIELFEEILSR--GKFSEGEAKPVFGALCAAVSYMHGKGIIHRDLKPENVLVS-EDVVKVVDFGLSKLVAAHKGGSAARTLVGTPSYLAPEIEDENHdYDEKVDAWSIGVTLYVMLIAR-FP 217
                  79*************99....8899999999965333222122448899***************************************99888886..899*************************************.89*************8888888889999999******9887767***************988744.33 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06    0.0028     166     195 ..     135     162 ..     108     166 .. 0.88
   2 !    4.5   0.8    0.0095        22      70     161 ..     294     381 ..     242     404 .. 0.72
   3 ?   -2.0   0.0      0.92   2.1e+03     104     133 ..     590     619 ..     538     625 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.2e-06
                  -EEB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 166 pvllHgDlhpgNllvdpddgrvgviDfeda 195
                  ++++H+Dl+p N+lv   +++v v+Df+++
  MMETSP0890-20130614|21453_1 135 KGIIHRDLKPENVLVS--EDVVKVVDFGLS 162
                  579*************..45555****987 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0095
                  EEEEEE---HHBCCT...CSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHH.HHHHHHHHHHHHHHHHHH CS
   PF01636.18  70 lfalleyvpgevler...klnarqlpallealaellaalhqadpaadpladflapyltllrllesataalvaselle.lleeleervlaalaallp 161
                  + + + +vp + ++    +  a+  p  ++ la ++aal +a++   p + ++a  ++++r l+s+ +          l++++   vl++l++l +
  MMETSP0890-20130614|21453_1 294 PSSSHNGVPHTAPRVentQREANTSPMPIAGLASAQAALAAAAALRLPDEMRRAGLVYHERALASRNL-------ATkLRGAAGL-VLETLDDLAL 381
                  5556666777777667776778889999999***********88888888888888888888888822.......2222444555.5555555544 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.92
                  HHHHS--TTSHGGHCTBCTHHHHHHHHHHH CS
   PF01636.18 104 alhqadpaadpladflapyltllrllesat 133
                  ++ + ++ + +++++l++ + ++++le++t
  MMETSP0890-20130614|21453_1 590 KFADEPQLKTRFDNRLHQFRQFWIDLERWT 619
                  444445667778888888888888888886 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.9e-07    0.0018      59     166 ..      64     160 ..      53     173 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.9e-07
    PF06293.9  59 vrEfrllkrLreagvpvpkpvaaaaqkvgleyqAdllteklegaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                   rE++++  L+ + +  ++ v++  +      q  l++e ++g++  +eil +  +++e   + ++ a+ ++++ mh  g+ H+dl + n+l+ e+     v ++D+ 
  MMETSP0890-20130614|21453_1  64 CREVQVMLGLKHKNIVELYGVYSDGN------QVRLVMELVNGIELFEEILSR-GKFSEGEAKPVFGALCAAVSYMHGKGIIHRDLKPENVLVSEDV----VKVVDFG 160
                  56666666666666666666655544......6779****************8.7789999999*****************************9996....7777775 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.7e-05     0.038      19      80 ..     145     204 ..     136     216 .. 0.82
   2 ?   -0.9   0.1      0.36   8.3e+02      43      74 ..     386     417 ..     372     442 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
    PF06570.6  19 ekglsdeekeeileevlpellegQkkGktArqLygtptekaeellekkkkekkrskenpwlm 80 
                  e+ l +e+  ++++  l +l+++ k G  Ar L gtp+  a e+ +++++  ++ +  +w++
  MMETSP0890-20130614|21453_1 145 ENVLVSEDVVKVVDFGLSKLVAAHKGGSAARTLVGTPSYLAPEIEDENHDYDEKVD--AWSI 204
                  5667789999999999******************************9999998888..5543 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.36
    PF06570.6  43 kkGktArqLygtptekaeellekkkkekkrsk 74 
                  kk   A+ ++ +++ +++el  + +++k+++ 
  MMETSP0890-20130614|21453_1 386 KKPEAAADILASVKRWTAELASECATAKTQNL 417
                  67778888888899999998888888877766 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.025      83     149 ..      93     160 ..      66     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-05
                  EEEE----TTCEGGC..TTTS-...-HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESSSEEE---T CS
   PF01163.17  83 lvmefigedgvaapk..lkdvel..eeaeelyeeileemrklykeaglvHaDLSeyNvlvdedkvviIDvs 149
                  lvme+++  g+++ +  l+  ++   ea+ ++  + ++    ++  g++H DL   Nvlv+ed v ++D++
  MMETSP0890-20130614|21453_1  93 LVMELVN--GIELFEeiLSRGKFseGEAKPVFGALCAA-VSYMHGKGIIHRDLKPENVLVSEDVVKVVDFG 160
                  99****9..66654422777777888999999999995.555669************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:01.72
# Mc/sec: 909.78
//
Query:       MMETSP0890-20130614|21467_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-11   43.6   0.0    2.5e-11   43.2   0.0    1.2  1  PF11833.3 Protein of unknown function (DUF3353)


Domain annotation for each model (and alignments):
>> PF11833.3  Protein of unknown function (DUF3353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.8e-15   2.5e-11       2      92 ..      96     189 ..      95     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.8e-15
    PF11833.3   2 edAsfeeiqsArnrllaeyagDeqarakiEaAYDaiLMqrLkeRqeGkikvkeairaaee....eekkkaaskksesspawlqrl.......lpsldlpsgq 92 
                  ++A  eeiq A ++l ++ya+D++++ ki  A D+i   rL++R  G++ v  ++++ ++    e+k+  ++k  +++p+w++r+                q
  MMETSP0890-20130614|21467_1  96 PNADYEEIQIAVKKLKEKYADDKKKMMKIDVAKDKIAELRLRQRMRGELAVTSEVAYLDReaelEAKNRFKNKMLQNQPKWIRRIplmwippN--------Q 189
                  68999******************************************************999888889999999999*******944444431........3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       554  (0.0405208); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:01.07
# Mc/sec: 606.93
//
Query:       MMETSP0890-20130614|21489_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                      125  (0.00914277); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 243.21
//
Query:       MMETSP0890-20130614|21494_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-61  207.1   0.0    3.1e-61  207.0   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.0   2.2e-65   3.1e-61     234     461 ..       1     239 [.       1     240 [. 0.95

  Alignments for each domain:
  == domain 1    score: 207.0 bits;  conditional E-value: 2.2e-65
                  EE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHH.HT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--E..E.EE---ETTEEEEEEE........ES--TTSGGGTS---SSEEEEEEES.SHHHHHHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTTS-B---TTTEE--BSS.HHHHHHTEEEEE CS
   PF00171.17 234 lElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhesiydefveklveaa.kklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGe..eekaglekgyfvePtvl........advtpdmriaqeEiFGPVlsvikfk.deeeaielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaealpfgGvkqSglGregg.kegleeytevkt 461
                  lElGG++p++Vl+daD + a++ +++  f+naGQ+C+++ r+lVh++++d+f+ +++++  +klk+G +ld+ t+lGPli+++++er++++i+ea++  a+ +      e++++l+  +fv+Pt++        ++ +p  +++++E FGPV ++++++ +++++i+laN+ + GLaa+v+++dl++a rvaerl+aG v +N+  + +a+a pfgGvkqSglGregg ++gl+ey+e k 
  MMETSP0890-20130614|21494_1   1 LELGGNAPFLVLSDADAEFAADLAMTTKFRNAGQTCVCADRFLVHDNVFDHFLMAIKDRIsTKLKLGRGLDPTTTLGPLITAEAAERIRDVIDEARST-AEAVWSPLmiEKTSDLSPANFVSPTIInlgswksdSKSQPVLSCWTKENFGPVFPILRIHgSDDDMIALANNDPSGLAAYVVGTDLRNAWRVAERLDAGLVGVNEAAISTANA-PFGGVKQSGLGREGGiQYGLHEYLEEKY 239
                  8**********************************************************97899********************************96.5555533358889999999********9999887777888999*****************89**********************************************99999.***************9********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 770.03
//
Query:       MMETSP0890-20130614|21501_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-29   99.9   0.0    1.6e-28   99.1   0.0    1.5  1  PF13766.1  2-enoyl-CoA Hydratase C-terminal region
    7.9e-23   80.7   0.0    1.1e-22   80.2   0.0    1.4  1  PF00378.15 Enoyl-CoA hydratase/isomerase family
  ------ inclusion threshold ------
      0.016   13.9   0.1      0.024   13.3   0.1    1.2  1  PF14057.1  GGGtGRT protein


Domain annotation for each model (and alignments):
>> PF13766.1  2-enoyl-CoA Hydratase C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   3.5e-32   1.6e-28       4     117 ..     235     353 ..     232     354 .. 0.93

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 3.5e-32
    PF13766.1   4 eqleaIdklfsadsveeilaaLeaegsewaaktlktlrkkSplslkvtleqlrrgre.lslaealrlElrlaarlmae.....gDfveGVralliDKdknPkWkpatleevteeeveslf 117
                  +  + I+ +fs++s+e+ila L+a+ +  a++ +ktlr++Sp+slkvtle++ r+++ + l+++l +++rlaa+l+       +Df++GVra+l+DKd++PkW+ + l+evt++ev+++f
  MMETSP0890-20130614|21501_1 235 TSPQLIEDAFSQSSIESILAVLDASSDSNAETLAKTLRAMSPTSLKVTLEAILRAHDvRCLNDVLTTDFRLAAHLTDPhlvplPDFYDGVRAVLVDKDRKPKWRAS-LSEVTKSEVDRHF 353
                  56688***************************************************9788****************96566668*******************985.**********998 PP

>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   2.5e-26   1.1e-22       3     182 ..       5     191 ..       3     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 2.5e-26
                  E-----EEEEE-----S----HHHHHHHHHHHHHHHH-TT----EEE-.---SSB----HHHCHHH...-CHHHH---HHHHHHHHHH...HT..-SS--EEEE---B-----HHHHHSSEEEEETT-EE--CCCC-----------HHHHH---HHHHHHHH----EEHHHHHHTTSSSEEE-GCC-- CS
   PF00378.15   3 elengvavikldrpekvNalsaelleelkealekleadksikaivlsg.gekaFsaGaDikelaae...teaeqaqlseeaqklvekl...ed..lekpvvAavnGaalGGGlelalacdyriaadeakfglpevklGilpgaggtqrlprlvGvsaAlemiltgrriradeAlkvGlvdkvvpeeelv 182
                  +l ++v+ ++l+rp+k+Nal+ e+++e++ a+ ++++++s  a+v++g g kaF+aG+D+ ++ a    + +  +++  e +++   l   +d  +++  v+   G+++GGG+ +     +r+a++   ++ pe+++G++p+ g++++l ++ G+ a   ++ltg r ra e l  Gl    +p++ l 
  MMETSP0890-20130614|21501_1   5 QLGQAVIRLTLNRPKKLNALDLEMVNEVTCAFLNMKKEHSCVAVVMRGaGSKAFCAGGDVAAVRASgleNGSLRTDFFREEYRMNALLgscSDgnSKIKQVSIWDGIVMGGGVGISAHGRFRVATERTMLAMPETQIGLFPDVGASFLLSKA-GA-AGICAALTGARLRASELLATGLATHYIPSNRLD 191
                  57799*************************************8887762689*********999987765555666555544444444111441146677***********************************************99996.43.34456799***************9999966543 PP

>> PF14057.1  GGGtGRT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.3e-06     0.024      71     120 ..      43      92 ..      23     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.3e-06
    PF14057.1  71 eaaeaaaaiGeglqaftvpGsvadqrkvGlGhGnlaamllseetkcfafl 120
                  ++  a  + G g +af+  G va  r  Gl  G l + +++ee +  a+l
  MMETSP0890-20130614|21501_1  43 HSCVAVVMRGAGSKAFCAGGDVAAVRASGLENGSLRTDFFREEYRMNALL 92 
                  3344556679*********************************9998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.92
# Mc/sec: 961.15
//
Query:       MMETSP0890-20130614|21526_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-36  123.8   0.0      8e-36  123.4   0.0    1.2  1  PF00069.20 Protein kinase domain
    5.1e-12   45.3   0.0      1e-11   44.3   0.0    1.5  2  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.022   14.4   0.6      0.041   13.4   0.1    1.7  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   1.8e-39     8e-36     107     259 ..       2     195 ..       1     196 [. 0.95

  Alignments for each domain:
  == domain 1    score: 123.4 bits;  conditional E-value: 1.8e-39
                  HHHHHHHHHHTCEE-S--SGGGEEEETT--E.EE------EEE...............CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.........................HHHHHHHHHHT-SSGGGS--HHHHHTSGG CS
   PF00069.20 107 ilegleylHsngiiHrDLKpeNiLldkkgel.kiaDFGlakkl...............eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.........................eelkdlikkllekdpakRltaeeilkhpw 259
                  +l +l+++Hs++++HrDLKp+N+L++++  + ++aDFG ++ +               e++++++t++v+tr+Y+APE+l +a+ y++++D+W++Gv+l+el+ + ++f+g+s+ dql +i + ++ ++ e +p+  + +                         +   +l++ ll+ +p+kR+ta  +++  +
  MMETSP0890-20130614|21526_1   2 TLAALAHIHSHSLMHRDLKPSNLLINSDLGIvELADFGQCRPIvndqpcmqyenhsdfEQNRHDMTHQVSTRWYRAPELLFGARRYSQAIDLWGVGVVLAELIANLPLFPGASDLDQLIRIFRLRGSPTTERWPSAVNLPdfdkihfpdtpptplniekgltkapTHTVQLLDALLQLEPTKRPTALTAFSFHF 195
                  689***********************775555*********99*******************************************************************************************998888*************************99******************988877655 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.2e-15     1e-11     115     200 ..       5     105 ..       2     137 .. 0.82
   2 ?   -3.8   0.0       1.1   4.8e+03     230     251 ..     165     186 ..     163     188 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 2.2e-15
                  HHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEES..........TTTSCE......EESTT-EECGGGS.-HHHHHHSE.EEHHHHHHH---HHHHHHT CS
   PF07714.12 115 GmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardi..........ekddyy......kkkeeaklpvkWm.apEslkekk.ftsksDvWsfGvllwEift 200
                  ++++++s++l+HrdL   N L++++  +v ++DfG +r i          +           +++ +++++ +W+ apE+l+  + ++++ D W  Gv+l E++ 
  MMETSP0890-20130614|21526_1   5 ALAHIHSHSLMHRDLKPSNLLINSDLgIVELADFGQCRPIvndqpcmqyeN----HsdfeqnRHDMTHQVSTRWYrAPELLFGARrYSQAIDLWGVGVVLAELIA 105
                  7899*******************9988************977777765431....12334335555677999**99****987655****************987 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.1
                  SBHHHHHHHHHHT-SSGGGS-- CS
   PF07714.12 230 cpeelyelmkqCweeepeeRpt 251
                  +p++  +l+   ++ ep++Rpt
  MMETSP0890-20130614|21526_1 165 APTHTVQLLDALLQLEPTKRPT 186
                  5677778888889999999997 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.1e-06     0.041     159     193 ..       6      39 ..       2      44 .. 0.67
   2 ?   -1.6   0.0      0.37   1.7e+03     121     121 ..     123     123 ..      64     189 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.1e-06
                  HHHCSS--EEB-SS-SGGGEEEETTTTEE.EE---T CS
   PF01636.18 159 llpgaeppvllHgDlhpgNllvdpddgrv.gviDfe 193
                  l +   +++l+H+Dl+p Nll+++d   +  + Df+
  MMETSP0890-20130614|21526_1   6 LAHI-HSHSLMHRDLKPSNLLINSD-LGIvELADFG 39 
                  4443.4899**************44.3333555555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.37
                  C CS
   PF01636.18 121 p 121
                  +
  MMETSP0890-20130614|21526_1 123 F 123
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.83
# Mc/sec: 664.05
//
Query:       MMETSP0890-20130614|21536_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.8   0.1      0.061   13.6   0.0    1.6  1  PF11799.3 impB/mucB/samB family C-terminal


Domain annotation for each model (and alignments):
>> PF11799.3  impB/mucB/samB family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.5e-06     0.061      28     103 ..     141     219 ..     125     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.5e-06
                  -----S-SEEEEEEE-.....---SHHHHH.....HHHHHHHHHHH..HHHHTSEEEEEEEE.E-TTS-EEEE-------- CS
    PF11799.3  28 isprkepkSissektfesdvssieeleell.....lrLaeelaerlrrrkllaktvtiklkvfdrntrqhtlsdeqvtltq 103
                  ++p+++p S+ +  t++  +s+  ++  +l      ++++++ er+  r++ ++t++i   +  +nt+q++ + +q  l+q
  MMETSP0890-20130614|21536_1 141 LTPQHQPGSFANRSTLTKNISNDNRAHFFLgdlplINIFAKVLERV--RSSRGSTLSIVATTPPTNTQQQQQHESQDDLHQ 219
                  5799***************999998666666666366*********..************997788888888778877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:01.88
# Mc/sec: 305.92
//
Query:       MMETSP0890-20130614|21555_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.95
# Mc/sec: 986.29
//
Query:       MMETSP0890-20130614|21558_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-05   23.9   1.6    7.1e-05   22.7   1.1    1.7  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
  ------ inclusion threshold ------
        1.1    8.6   4.7          2    7.7   3.2    1.4  1  PF04977.10 Septum formation initiator
        1.1    8.9   3.1        0.6    9.7   0.5    1.8  2  PF14038.1  YqzE-like protein


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.1   1.6e-08   7.1e-05       8      80 ..      67     144 ..      61     145 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.6e-08
                  TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTS.BSTTCEEEEE....TT..EBGTTSHHHHHHHHHHTHHS.EEEEEE CS
   PF00595.19   8 krgglGfslkggsdkrdkgifvsevvpggaaeagg.lkeGDkIlsv....Ng..vdvenvshdeavqaikgkkg.evtLti 80 
                   r++lG+ l +        ++v+e+v+gg a+a g +keGD++       +g   ++++v + ++v ai+  +g +v+L++
  MMETSP0890-20130614|21558_1  67 IRKPLGLVLDEKPGG---DVYVKEIVKGGNADAVGgIKEGDIVAMCsatfGGdmWSTRGVGLSRVVRAIEVRSGnSVSLVV 144
                  68899*****99986...8*********66666666*****9876533332255666666677777666655555666666 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.2   0.00045         2      23      51 ..     160     188 ..     150     192 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00045
   PF04977.10  23 kqeiaalqaelaklkaeneeLeaevkdLk 51 
                  +++ a+ ++++++  a+++eLe+e+k  +
  MMETSP0890-20130614|21558_1 160 QEKAADREKKIEQAAAKRQELEEEIKAER 188
                  6788999******************9865 PP

>> PF14038.1  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.5   1.1e+04      23      28 ..      23      28 ..      22      34 .. 0.61
   2 ?    9.7   0.5   0.00013       0.6      16      45 ..     169     198 ..     167     199 .] 0.92

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.5
    PF14038.1 23 eRkkkk 28
                 eR+k k
  MMETSP0890-20130614|21558_1 23 ERRKTK 28
                 555554 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00013
    PF14038.1  16 yldtPkeeRkkkkeerkeekepfssrwFGv 45 
                   +++   +R++  ee k+e++  ++ wFG+
  MMETSP0890-20130614|21558_1 169 KIEQAAAKRQELEEEIKAERKEAAKGWFGL 198
                  68899999*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1167  (0.0853569); expected 273.4 (0.02)
Passed bias filter:                      774  (0.0566121); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.69
# Mc/sec: 691.12
//
Query:       MMETSP0890-20130614|21562_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   16.5   7.5      0.007   16.5   5.2    2.9  3  PF03131.12 bZIP Maf transcription factor
  ------ inclusion threshold ------
        1.2    8.3  15.5        1.5    8.0  10.7    1.2  1  PF06136.8  Domain of unknown function (DUF966)
          6    6.8   5.6         17    5.3   0.1    3.5  3  PF12537.3  Protein of unknown function (DUF3735)


Domain annotation for each model (and alignments):
>> PF03131.12  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.6      0.24   1.1e+03      60      74 ..      75      89 ..      43     103 .. 0.53
   2 !   16.5   5.2   1.5e-06     0.007      24      91 ..     110     178 ..     100     181 .. 0.86
   3 ?   -0.7   0.3      0.36   1.6e+03      64      86 ..     204     226 ..     183     234 .. 0.50

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.24
   PF03131.12 60 kekselaqeveklke 74
                 + k++l++ +e +ke
  MMETSP0890-20130614|21562_1 75 DSKRDLSETIEDIKE 89
                 234444444455544 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1.5e-06
   PF03131.12  24 skeevvrlkqrrrtlk.nrGyaqsCrvkrvqqkeelekekselaqeveklkeevarlarerdalkekle 91 
                  ++e++ r kqr   l   r      r   v+q+e+ ek  ++ +++v +l+ee a+ ++erd+l++k+ 
  MMETSP0890-20130614|21562_1 110 AEEQAERAKQREERLElYRREISDTRASIVSQREMWEKLVKDSEAQVRQLREELAKTREERDTLRAKVS 178
                  6788899999977665357778889****************************************9975 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.36
   PF03131.12  64 elaqeveklkeevarlarerdal 86 
                  el +e++ +k+    +++ r+ +
  MMETSP0890-20130614|21562_1 204 ELGSEIDMFKHHAQLFNKRREQF 226
                  34445555555444444444444 PP

>> PF06136.8  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.7   0.00033       1.5      91     236 ..      39     175 ..       9     232 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00033
    PF06136.8  91 ssssskseeakvnsvlkeseeeassrkasessssssverkasksksssslaeykvekaeekeeeesavvaadastqtddsrrreskkeseeesselsreeisppssssasssssksetleslikadaskiesfeileeeevamtaa 236
                    s+  + e k ++  ke  + ++ ++a +++ s+s+ +k+  s++  +++e+ ++k+ee      + + ++a+ ++  +  + ++++++ee+ el r eis   +s   s+++  e+l +  +a+ +++++   +++ee  +  a
  MMETSP0890-20130614|21562_1  39 DDSEAGNVESKESEEEKEIIRAQKAEEA-QREISQSADSKRDLSETIEDIKEEPNNKKEE------KPMIVNATIVPSAEE-QAERAKQREERLELYRREISDTRAS-IVSQREMWEKLVKDSEAQVRQLREELAKTREERDTLRA 175
                  3333222222222222222222222222.2334444444444455555555555555544......455566555555554.3444577788899999999999988.77777777777777777777777776666555543333 PP

>> PF12537.3  Protein of unknown function (DUF3735)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.07   3.2e+02      43      61 ..     150     168 ..     112     172 .. 0.75
   2 ?    5.3   0.1    0.0038        17      40      68 ..     173     201 ..     169     205 .. 0.90
   3 ?    2.2   0.1     0.036   1.7e+02      41      69 ..     197     225 ..     195     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.07
    PF12537.3  43 pvserdinnlerrlnhtts 61 
                  + se+++++l+++l++t++
  MMETSP0890-20130614|21562_1 150 KDSEAQVRQLREELAKTRE 168
                  4457788888888877766 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0038
    PF12537.3  40 frrpvserdinnlerrlnhttsllakkkk 68 
                  +r++vs  d+  +++++++t++l+++k +
  MMETSP0890-20130614|21562_1 173 LRAKVSSGDLEYRQKTNEFTENLIRQKMR 201
                  68999*********************987 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.036
    PF12537.3  41 rrpvserdinnlerrlnhttsllakkkke 69 
                  r++ + +++ + +  ++h  +l +k++++
  MMETSP0890-20130614|21562_1 197 RQKMRAAELGSEIDMFKHHAQLFNKRREQ 225
                  5566678899999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1942  (0.142042); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.87
# Mc/sec: 647.29
//
Query:       MMETSP0890-20130614|21556_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   52.8  24.1    2.5e-14   52.8  16.7    1.4  1  PF01061.19 ABC-2 type transporter
      5e-14   52.5   0.0    1.1e-13   51.4   0.0    1.6  1  PF00005.22 ABC transporter
    1.2e-07   31.2   0.4    3.6e-07   29.6   0.3    1.8  1  PF13481.1  AAA domain
    1.6e-06   28.1   0.7      1e-05   25.5   0.0    2.4  2  PF13304.1  AAA domain
    1.7e-06   28.3   0.3    3.4e-06   27.4   0.2    1.4  1  PF13191.1  AAA ATPase domain
    2.5e-06   26.8   0.1    6.7e-06   25.4   0.1    1.7  1  PF13555.1  P-loop containing region of AAA domain
      4e-05   24.2   0.0    0.00029   21.4   0.0    2.3  2  PF13207.1  AAA domain
    0.00016   20.7   0.0    0.00027   20.0   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
    0.00027   20.1   0.0    0.00045   19.4   0.0    1.3  1  PF12846.2  AAA-like domain
    0.00068   18.8   0.2       0.12   11.4   0.0    2.3  2  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0011   19.2   1.1     0.0025   18.0   0.0    2.0  2  PF13476.1  AAA domain
     0.0086   15.4   0.2      0.056   12.7   0.0    2.2  2  PF01580.13 FtsK/SpoIIIE family
     0.0087   14.8   9.5      0.014   14.1   6.6    1.4  1  PF12679.2  ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.022   14.4   0.0    1.4  1  PF13671.1  AAA domain
      0.013   15.3   0.0      0.029   14.2   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
      0.014   14.3   0.0        7.5    5.3   0.0    3.0  3  PF13175.1  AAA ATPase domain
      0.014   15.3   0.1      0.044   13.7   0.1    1.9  1  PF13401.1  AAA domain
      0.015   15.4   0.2      0.039   14.1   0.0    1.8  1  PF13238.1  AAA domain
      0.018   14.6   0.3      0.059   13.0   0.0    2.0  2  PF13245.1  Part of AAA domain
      0.021   14.1   0.0      0.038   13.3   0.0    1.4  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.036   13.6   0.1       0.11   12.0   0.0    1.8  2  PF01637.13 Archaeal ATPase
      0.067   12.1   0.1       0.24   10.3   0.0    1.8  2  PF06918.9  Protein of unknown function (DUF1280)
      0.079   12.7   0.1       0.41   10.4   0.1    2.2  1  PF13558.1  Putative exonuclease SbcCD, C subunit
      0.079   11.8   0.0       0.15   10.8   0.0    1.4  1  PF00735.13 Septin
       0.08   12.4   0.0       0.28   10.6   0.0    1.9  2  PF05729.7  NACHT domain
      0.094   11.4   0.0       0.17   10.6   0.0    1.3  1  PF00437.15 Type II/IV secretion system protein
       0.15   10.9  16.8       0.29   10.0  11.7    1.5  1  PF12698.2  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8  16.7     5e-17   2.5e-14       1     207 [.     383     587 ..     383     589 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 5e-17
   PF01061.19   1 eqikallkreflqryrdpslgllwkliqpllmalvfgtvfgnlg.nssgglqrpgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldls..fflflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrsn 207
                  eqi++l+ r+++    +p+++   ++  +l  a++ g ++++++  ++++  r+ l f + + ++f+ l  + +++++ + +l++el+s+ y l a +   + + l+ +++q+++ + +v++l +l +    f+++l+++l +l++ s+gll+sa  p  ++ +++a l +++++l++G+f+pld+ p  + +i+ lnP+ y+v + +++
  MMETSP0890-20130614|21556_1 383 EQIRVLFTRTWKEV--RPTIFDRNSVTLHLGNAILAGIMWWRMSyREADVWPRITLSFAVPIAWVFYPLLDSLTVVPKSEIMLKKELSSNSYMLAAWYCTTTTTLLTPMFAQSFMHVSLVFLLSNLGPLlvWFIMYLTVFLALLCFQSIGLLFSAAIPA-KNLMTVALLYVTFCFLYTGIFVPLDATP--IPFIAFLNPMIYIVGLSIHV 587
                  58999999999988..444444789999*************99966666668888888888888889999998**************************************************999997644***********************9986.99*************************9..589999*******9877665 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   2.2e-16   1.1e-13       1     118 []      58     186 ..      58     186 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 2.2e-16
                  HHHHHHHTTSS------EEE-...--BGGGB-HHHHHEEEE-------.--BHHHHHH----S--.......-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklrigyipqdpllfpeltvrenldmakeekk.......tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  STLl+++++    +eg+++++ +dr    s++l+kl +++++q+ ++  +ltvre+l ++ +          +++ ++e+++ ++l++ +d+    + v+++SgG+k+r+ +   +l+kp ll LDEPt+
  MMETSP0890-20130614|21556_1  58 STLLNAICRRGPISEGDMWYSdGDRGLTWSKSLKKL-VAFVEQEDHALANLTVRETLLFSARLRLpktsvdeKKQIVDETIALLKLTKVADSkvgsTLVRGISGGEKKRLLIGVDMLTKPLLLALDEPTS 186
                  9********************666533334555555.********************9888775599****988888999999999997777688899999***************************96 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.3   7.1e-10   3.6e-07      11     189 ..      20     217 ..      13     221 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 7.1e-10
    PF13481.1  11 saedldtppppldwlvk..gllprgsltllaGapgtGKStlalqlaaava..tGepflg.......pvvpepgrVlylsaEdseaelrrrlsail...aal.....ddpenlllvslagvgslrltaddrrdalltadlerllaaieeleg.pdlvviDtlsr..lvgg.dens..nsdv.gaviaalerlakrtgaavllvhHt 189
                   +++++t++ + + l +  g + +g++t+laG++g+GKStl+ +++ +    +G+ +         + ++ ++ V ++  Ed +      ++++l   a+l     + +e+  +v+    + + l + ++ +       ++l++ i   e+   l+ +D+l++  l++  ++ s  +s+v + v++al++la++ +++v++  H 
  MMETSP0890-20130614|21556_1  20 HFRGISTRFGETQALAPvsGDIEAGEVTMLAGPSGSGKSTLLNAICRRGPisEGDMWYSdgdrgltWSKSLKKLVAFVEQEDHA-LANLTVRETLlfsARLrlpktSVDEKKQIVD----ETIALLKLTKVAD--SKVGSTLVRGISGGEKkRLLIGVDMLTKplLLALdEPTSglDSAVaATVVDALRHLAQSRNVSVVTSLHQ 217
                  5667888888888888777**************************987555555555556666664555688889999888886.6666666666555444445545555555555....5566655544443..3445667777777666355667****998544444444422344579******************99996 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     2e-08     1e-05       1     302 [.      46     232 ..      46     233 .. 0.89
   2 ?   -2.4   0.1       6.4   3.2e+03     107     160 ..     295     348 ..     277     396 .. 0.52

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2e-08
    PF13304.1   1 lnviiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsn............ggsQlifTTHSpvll 302
                  ++ + Gp gsGKS+lL a+              +r++ ++ + ++   d+     ++  ++  f++++++   ++ +    +                                                                                  + +++ l+k++  e+k++   ++ + ++ ++ +++ +   v                                S G+k+ l +    l+ +    +l++DEp +gL+  +  ++++ l+ l++              s ++++ H  +ll
  MMETSP0890-20130614|21556_1  46 VTMLAGPSGSGKSTLLNAIC-------------RRGPISEGDMWYSDGDRGLTWSKSLKKLVAFVEQEDHALANLTVRETLL----------------------------------------------------------------------------------FSARLRLPKTSVDEKKQIVDETIALLKLTKVADSKVGSTLVRGI-----------------------------SGGEKKRLLIGVDMLTKP---LLLALDEPTSGLDSAVAATVVDALRHLAQsrnvsvvtslhqPSSRIFLSCHKLLLL 232
                  6899***************6.............89***********************************************..................................................................................************99999999999999998888888777777777.............................*******99999999988...8899********************55555555777777777888888888866666 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 6.4
    PF13304.1 107 eydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilkllds 160
                  +  ++++++ ++ +  k++ ++  s    n+  +++++ +   ++  ++  l++
  MMETSP0890-20130614|21556_1 295 NLQESFAQDMKDVENPKDNDQIETSKENTNSASSIDNIQIPPLHIRKARRALIN 348
                  444444444444444444444444444444444444444444444444444443 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   6.8e-09   3.4e-06       8     165 ..      30     211 ..      27     215 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.8e-09
    PF13191.1   8 eleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.........lpysaiiqalrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr.............................rpklvlvlDD....lqwadresl.dlLeallerlsel.pllv 165
                  e +aL+ +  ++ +g+ +  + GpsG+GKS+Ll++     + +r+   +g  +    +           + a++++ +++l++l  +++  ++++ + ++ + ++          ++++v++  a+l+ t+                              ++l+l lD+    l+ a ++++ d+L++l++    + ++ v
  MMETSP0890-20130614|21556_1  30 ETQALAPVSGDIEAGE-VTMLAGPSGSGKSTLLNA-----ICRRGPISEGDMWYSDGDrgltwskslKKLVAFVEQEDHALANLTVRETLLFSARLRLPKTSVDE----------KKQIVDETIALLKLTKvadskvgstlvrgisggekkrlligvdmlTKPLLLALDEptsgLDSAVAATVvDALRHLAQ----SrNVSV 211
                  5667777777888888.999***************.....77777777776666666657655554433334444455555555555555555555555555555..........666666666666666666666668889999999999999999998545******98554444444444455555555....435555 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.3e-08   6.7e-06      22      43 ..      43      64 ..      37      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.3e-08
    PF13555.1 22 kgkntlltGasGsGKSTllDAi 43
                 +g++t+l+G+sGsGKSTll Ai
  MMETSP0890-20130614|21556_1 43 AGEVTMLAGPSGSGKSTLLNAI 64
                 6789*****************8 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.8e-07   0.00029       4      65 ..      49     108 ..      46     148 .. 0.65
   2 ?   -0.9   0.0       4.6   2.4e+03      29     100 ..     380     449 ..     363     467 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.8e-07
                  -B--TT---HHHHHHHHHHSTEEEEEGGGB--GGGS-.B--.---B--SSGGGB-HHHHHHHH. CS
    PF13207.1   4 itGppGsGKsTlakeLaerlglpvlslddllreeglk.eld.dgereskdadadllaaildgla 65 
                  + Gp+GsGKsTl +++++r   p +s +d +++ + + +l     ++  +a  +  +  l++l+
  MMETSP0890-20130614|21556_1  49 LAGPSGSGKSTLLNAICRR--GP-ISEGD-MWYSDGDrGLTwSKSLKKLVAFVEQEDHALANLT 108
                  67*****************..57.68888.5554444344334444444544455555555553 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 4.6
                  EGGG.B-..-GGGS-B-----B--SSGGGB-HHHHHHHH....H..HHHHHHTTS.-----------EEEEE---- CS
    PF13207.1  29 sldd.ll..reeglkelddgereskdadadllaaildglaakkdtlswvidgale.seldlrleeadeiiyldapl 100
                  s ++ ++   ++++ke++ ++++++   ++l +ail+g++       w ++  ++ +   + l++a  i+++++pl
  MMETSP0890-20130614|21556_1 380 SFSEqIRvlFTRTWKEVRPTIFDRNSVTLHLGNAILAGIM---W---WRMSYREAdVWPRITLSFAVPIAWVFYPL 449
                  5555442347788998888888888888899999999983...2...44444333333344444555777777777 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.4e-07   0.00027      22      58 ..      30      67 ..       7      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.4e-07
                 HHTT-HHHHHHCTT.SBEEEE-------HHHHHHH--- CS
   PF03193.11 22 tkegleelaellkd.ktsvlvGqSGvGKSsLinallpe 58
                 ++++l+ ++  ++  ++++l+G+SG GKS+L+na+  +
  MMETSP0890-20130614|21556_1 30 ETQALAPVSGDIEAgEVTMLAGPSGSGKSTLLNAICRR 67
                 6777777777887779******************9876 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.9e-07   0.00045       4      43 ..      47      88 ..      45     154 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.9e-07
    PF12846.2  4 tlilGppGsGKSvllkklvlqllargprvvii..Dpggeysg 43
                 t++ Gp+GsGKS+ll++++++     +++ +   D+g  +s+
  MMETSP0890-20130614|21556_1 47 TMLAGPSGSGKSTLLNAICRRGPISEGDMWYSdgDRGLTWSK 88
                 899***************999888777777775555655555 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00025      0.12      25      45 ..      45      65 ..      34      66 .. 0.88
   2 ?    5.1   0.0     0.021        10     137     198 ..     158     216 ..      95     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00025
                 SEEEE--------HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 25 sftaivGpNGSGKsnvldAil 45
                 ++t++ Gp GSGKs +l+Ai+
  MMETSP0890-20130614|21556_1 45 EVTMLAGPSGSGKSTLLNAIC 65
                 589****************95 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.021
                  -----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEE.EEE-S- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   PF02463.14 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQf.ivislr 198
                  +SgGek+     Ll+ + +  +  l  lDe  + LD +  + v++ l++  ++  + +v+sl+
  MMETSP0890-20130614|21556_1 158 ISGGEKK----RLLIGVDMLTKPLLLALDEPTSGLDSAVAATVVDALRHLAQSRNVsVVTSLH 216
                  7999998....78999999999999***********************887776551444554 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     5e-06    0.0025      21      40 ..      46      65 ..      28      66 .. 0.91
   2 ?   -1.2   0.2       3.7   1.9e+03     129     132 ..     303     306 ..     270     384 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5e-06
    PF13476.1 21 ltlItGpNGsGKTTildAic 40
                 +t + Gp GsGK+T+l+Aic
  MMETSP0890-20130614|21556_1 46 VTMLAGPSGSGKSTLLNAIC 65
                 8999***************9 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.7
    PF13476.1 129 dkei 132
                  d + 
  MMETSP0890-20130614|21556_1 303 DMKD 306
                  1111 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00011     0.056      22      58 ..      28      64 ..      22      67 .. 0.87
   2 ?   -0.4   0.0       1.2   6.1e+02     112     173 ..     301     360 ..     278     402 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00011
   PF01580.13 22 lgkegsgkplvadlvkaphlLiaGatgsGKStflrtL 58
                 +g+ +   p++ d+   + ++ aG +gsGKSt l+++
  MMETSP0890-20130614|21556_1 28 FGETQALAPVSGDIEAGEVTMLAGPSGSGKSTLLNAI 64
                 455568889999***********************98 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.2
   PF01580.13 112 vaemeeRyallkqlgvrsieeydgeiaevpldgfagreleelpslvvivderaelrlaapkd 173
                   ++m+  ++  +++++  ++e + + a +++++ + + l+++++ ++++ er  +     +d
  MMETSP0890-20130614|21556_1 301 AQDMKDVENPKDNDQIETSKE-NTNSASSIDNI-QIPPLHIRKARRALINERYGVHSLPARD 360
                  555666666666666666665.66666666665.3444444444444444443333333333 PP

>> PF12679.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   6.6   2.9e-05     0.014     107     274 ..     456     661 ..     453     663 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-05
    PF12679.2 107 vsRseillgKllggllvgli.lliailatvll.......tlvviaalgislalgdlllllllsvllllavlvflalgllvSsvlkssstaaaaalvllfllsllspilvlgiaklkaeelvikdklsflsptsaynlllgellktsdvn..............................................lknatnllvllaylavflglayvlFkr 274
                  v +sei l K l++  ++l+ +  +++ t+l        + v ++ l  +l    ++++++l+v+l+l  l+f ++gll+S+ +   ++ +++al  + +  l  +i+v ++++ +    +         ++  +n ++  +   ++v                                                + a ++++lla  +++ + a++++kr
  MMETSP0890-20130614|21556_1 456 VPKSEIMLKKELSSNSYMLAaWYCTTTTTLLTpmfaqsfMHVSLVFLLSNLGPLLVWFIMYLTVFLAL--LCFQSIGLLFSAAIP-AKNLMTVALLYVTFCFLYTGIFV-PLDATPI---P---------FIAFLNPMIYIVGLSIHVVfglngrkyrcsnnvddagtlypkscdddgdgkiapveilreyglrpFSPAVCIAALLAFMLISRISAFFILKR 661
                  67899*****9*99999888777777777777777765433333333333444455566666665555..679************.55555555554444445555555.4333333...3.........33333333333333333333444445567777777777777777777777777777777777777777777777777777777777777777 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.4e-05     0.022       1      22 [.      46      67 ..      46      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.4e-05
    PF13671.1  1 lvllvGlpGsGKstlaerllkk 22
                 +++l G++GsGKstl+++++++
  MMETSP0890-20130614|21556_1 46 VTMLAGPSGSGKSTLLNAICRR 67
                 789*************999876 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.7e-05     0.029       3      22 ..      48      67 ..      46     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.7e-05
                 EEE--TT---HHHHHHHHCS CS
   PF01926.18  3 aivGrpNvGKStLinaLtge 22
                 ++ G + +GKStL+na++++
  MMETSP0890-20130614|21556_1 48 MLAGPSGSGKSTLLNAICRR 67
                 789**************963 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.015       7.5      23      43 ..      45      74 ..      20     145 .. 0.69
   2 ?    4.3   0.0     0.031        16     368     412 ..     177     218 ..      87     219 .. 0.89
   3 ?    0.0   0.6       0.6     3e+02     239     275 ..     287     323 ..     269     351 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.015
    PF13175.1 23 slnviiGeNgsGKttILeal.........e 43
                  ++++ G +gsGK+t+L a+         +
  MMETSP0890-20130614|21556_1 45 EVTMLAGPSGSGKSTLLNAIcrrgpisegD 74
                 56799***************6655555540 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.031
    PF13175.1 368 lnknIlliDEPeahlhptlqkellefLkelakknniqiiitTHsp 412
                  l    l++DEP   l++ +   + + L +la+  n+ ++++ H p
  MMETSP0890-20130614|21556_1 177 L---LLALDEPTSGLDSAVAATVVDALRHLAQSRNVSVVTSLHQP 218
                  3...89*************************************98 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.6
    PF13175.1 239 iniyeidnriektlskildeneesikknqenleeein 275
                  in ++ ++++++++  +++++e+ + ++q+ + +e +
  MMETSP0890-20130614|21556_1 287 INEKDGKENLQESFAQDMKDVENPKDNDQIETSKENT 323
                  3333333333333333333333322222222222221 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   8.6e-05     0.044       5      68 ..      45     103 ..      41     217 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.6e-05
    PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg 68 
                   ++++ G+sG+GK+tll+ + r+ ++      + +  + +   + ++++ l+kl++ ++++ ++
  MMETSP0890-20130614|21556_1  45 EVTMLAGPSGSGKSTLLNAICRRGPIS-----EGDMWYSDGDRGLTWSKSLKKLVAFVEQEDHA 103
                  678999**************9987653.....22222333333335555555555555555555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.7e-05     0.039       3      41 ..      49      87 ..      48     150 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.7e-05
    PF13238.1  3 itGtpGvGKtTlakeLaerlgdvlrdlakengleeevdd 41
                 ++G++G+GK+Tl++++ +r+ ++  d++++ g+      
  MMETSP0890-20130614|21556_1 49 LAGPSGSGKSTLLNAICRRGPISEGDMWYSDGDRGLTWS 87
                 89***************9976666666666655544444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012     0.059      11      58 ..      45     107 ..      39     127 .. 0.75
   2 ?   -2.8   0.2       9.6   4.9e+03      25      46 ..     194     210 ..     191     216 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00012
    PF13245.1  11 pllvvtGgPGtGKTttlaaiiaall...............aarekp.grsvllvaptgraakrl 58 
                   ++++ G+ G+GK+ tl+++i+++                 +++k  ++ v +v + + a+++l
  MMETSP0890-20130614|21556_1  45 EVTMLAGPSGSGKS-TLLNAICRRGpisegdmwysdgdrgLTWSKSlKKLVAFVEQEDHALANL 107
                  57889*********.******9987777777777777777446666677777777777777666 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 9.6
    PF13245.1  25 ttlaaiiaallaarekpgrsvl 46 
                  +t++++ ++l+++     r v 
  MMETSP0890-20130614|21556_1 194 ATVVDALRHLAQS-----RNVS 210
                  3556666666533.....2343 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.5e-05     0.038       2      22 ..      46      66 ..      45      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.5e-05
                 EEEEE-------HHHHHHHHC CS
   PF02492.14  2 vtvltGflGsGKTtLleklle 22
                 vt+l G+ GsGK+tLl+++++
  MMETSP0890-20130614|21556_1 46 VTMLAGPSGSGKSTLLNAICR 66
                 799****************95 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00021      0.11      20      56 ..      44      80 ..      32     201 .. 0.69
   2 ?   -1.9   0.1       3.8   1.9e+03      68      97 ..     286     317 ..     268     348 .. 0.48

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00021
                 -SEEEEE--TT---HHHHHHHHHH-..---HHHHH-- CS
   PF01637.13 20 nsiiviyGprrsGKTaLlkeileelkekgkrvvyyin 56
                  +++++ Gp +sGK++Ll+ i ++   ++ +  y + 
  MMETSP0890-20130614|21556_1 44 GEVTMLAGPSGSGKSTLLNAICRRGPISEGDMWYSDG 80
                 48999****************9988554444444443 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.8
                  H....HHHS-SHHHHHHHHT....-----..T CS
   PF01637.13  68 fieeeeekkklakalgialpkaeleeilk..k 97 
                   i+e++ k++l++ +++ ++ +e  + ++  +
  MMETSP0890-20130614|21556_1 286 AINEKDGKENLQESFAQDMKDVENPKDNDqiE 317
                  23344444444444444443333322222221 PP

>> PF06918.9  Protein of unknown function (DUF1280)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00047      0.24      32      82 ..      90     138 ..      82     146 .. 0.90
   2 ?   -1.8   0.0       2.4   1.2e+03      73     114 ..     343     386 ..     339     400 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00047
    PF06918.9  32 lrkfvkrlskseefsfktklskeetlilvsklrLsdgqlkklKsllkkflg 82 
                  l+k+v++++++++      l+ +etl + ++lrL + +  + K+++ +++ 
  MMETSP0890-20130614|21556_1  90 LKKLVAFVEQEDHALAN--LTVRETLLFSARLRLPKTSVDEKKQIVDETIA 138
                  7899999*999998888..**************************999886 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.4
    PF06918.9  73 lKsllkkflgldvlpSrkevdklkk..klstsdnykiseekkdk 114
                   ++l+++  g+  lp r+  +kl+   ++   + y++s +++ +
  MMETSP0890-20130614|21556_1 343 RRALINERYGVHSLPARDPSNKLQAvrSIRKREDYSVSFSEQIR 386
                  5788999999999*****99999862267778899999887765 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00081      0.41      63      89 ..     175     201 ..     140     202 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00081
    PF13558.1  63 sirlvfLDEAFsklDeeniasllellr 89 
                  ++ l++LDE++s+lD+  +a+++++lr
  MMETSP0890-20130614|21556_1 175 KPLLLALDEPTSGLDSAVAATVVDALR 201
                  5779********************997 PP

>> PF00735.13  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0003      0.15       8      68 ..      48     110 ..      44     124 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0003
   PF00735.13   8 mvvGesglGkttlintlfetdlieeeeeleeake.ekkktveikkkkaeie.edgvklnltvi 68 
                  m++G sg Gk+tl+n+++++  i+e +   ++ +   + + ++kk  a +e ed+   nltv 
  MMETSP0890-20130614|21556_1  48 MLAGPSGSGKSTLLNAICRRGPISEGDMWYSDGDrGLTWSKSLKKLVAFVEqEDHALANLTVR 110
                  99****************998777755544444423344455555555444133444456665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00056      0.28       2      22 ..      46      66 ..      45      68 .. 0.89
   2 ?   -2.5   0.0       5.9     3e+03     107     143 ..     267     303 ..     255     309 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00056
    PF05729.7  2 tvilqGeaGsGKTtLlqklas 22
                 + +l G++GsGK+tLl  +++
  MMETSP0890-20130614|21556_1 46 VTMLAGPSGSGKSTLLNAICR 66
                 67899************9985 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.9
    PF05729.7 107 rtlLselirkkllpeasllltvrpdalrdleeqleea 143
                  + l++ ++r++l +++++ ++   d+ ++l+e++++ 
  MMETSP0890-20130614|21556_1 267 DWLIEVIVRGELSTKSTVNAINEKDGKENLQESFAQD 303
                  4566777888888889998999999999999988875 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.17     128     149 ..      44      65 ..      27      72 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00034
   PF00437.15 128 rgnilvsGgTgsGKttllnall 149
                    + +++G+ gsGK+tllna+ 
  MMETSP0890-20130614|21556_1  44 GEVTMLAGPSGSGKSTLLNAIC 65 
                  556789**************86 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.7   0.00057      0.29     202     317 ..     471     588 ..     437     659 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00057
    PF12698.2 202 faywlskilgdllvgliqlllilll....afglegipfgnlllll.llfllfglayialgyllsslfksestaqlvisililllsgfflglfp.leslpsflkwifsiiPffslgdgllrii 317
                  + +++++++++ +  l++++   ++    +f l+++++  +++++ l  +l +l++ ++g+l+s+++    + ++ + +l ++++++++g+f+ l+  ++++ +i+ ++P+ +++ + + + 
  MMETSP0890-20130614|21556_1 471 SYMLAAWYCTTTTTLLTPMFAQSFMhvslVFLLSNLGPLLVWFIMyLTVFLALLCFQSIGLLFSAAIPAK-NLMT-VALLYVTFCFLYTGIFVpLD--ATPIPFIAFLNPMIYIVGLSIHVV 588
                  3344556677777777777655553222233312343333333335555666666666666666665433.2233.33444457888888874455..89999********99876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       927  (0.0678028); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:01.43
# Mc/sec: 1129.47
//
Query:       MMETSP0890-20130614|21576_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-06   25.1   0.0    1.7e-05   24.4   0.0    1.4  1  PF09409.5 PUB domain
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.026   14.6   0.0    1.4  1  PF03517.8 Nucleotide-sensitive chloride conductance regulator (ICln)


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.4e-09   1.7e-05       8      77 ..      35     109 ..      33     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.4e-09
    PF09409.5   8 kaleiLlkllkNIlknPneekyRrirlsNktfkekilsv.eg.avelLellGFkeeee...eeflvlpeqseesl 77 
                  k++  L +l+  I   P++e+ R +r+sN +f  ++    e+ +   + +lGF+ ++    +++++l++++++++
  MMETSP0890-20130614|21576_1  35 KIIIALTHLIASITAAPDDENRRCLRCSNVKFAADFGRPlESrVTCAFFALGFRLVYRpksSDYIQLSQDNDNND 109
                  6777899*****************************97745579999************9888888884444443 PP

>> PF03517.8  Nucleotide-sensitive chloride conductance regulator (ICln)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.8e-06     0.026      44      95 ..      98     148 ..      83     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.8e-06
    PF03517.8  44 Ylqleteeaaeeeeeeedeeeesveltlvpedketsld...elfealsecsalhp 95 
                  Y+ql++    +++++++d+++e+  l l+ +d+ t ld   + ++ l++c +l +
  MMETSP0890-20130614|21576_1  98 YIQLSQ----DNDNNDDDDDDEEPYLVLREPDPMTDLDawsAWYDHLTACNNLLQ 148
                  888888....667777778888999****99888888722257********9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.42s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 623.81
//
Query:       MMETSP0890-20130614|21583_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-10   38.7   0.0    1.1e-09   38.3   0.0    1.2  1  PF00106.20 short chain dehydrogenase
    2.8e-06   27.2   0.0    3.3e-06   26.9   0.0    1.0  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.034   13.8   0.0    1.5  1  PF13092.1  Kinetochore complex Sim4 subunit Fta1


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   2.4e-13   1.1e-09      58     165 ..       3     121 ..       1     123 [. 0.84

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2.4e-13
                  E--TTSHHHHHHHHHHHHHH----SEEEEE---TT-TT......CCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHH...HSSTT.HHHHHHHCHHHCCHHHHHHH CS
   PF00106.20  58 acDvadrdalaallaeirkalgpldgvvhnagvlddgp......leeltperlervlapkvtgawllheltld....adlgafvlfSSvagv...lgspgqaaYaaakaaldalaesrrae 165
                   +Dv++ +++++l ++i+  + ++d++++n gvl+d++      l +++p+ l+r ++++  ga+l+++++ +    ++ + ++++S   g    +   g+ +Y  +kaal++ +++++ e
  MMETSP0890-20130614|21583_1   3 ELDVTNDESIRTLPERIQ--YNRVDLLINNVGVLHDETnkperaLNQVDPNWLRRSFDTNCVGAILTTQALSQalrrTPNSIVINMSARVGSisdNRLGGWYSYRISKAALNQATKTMALE 121
                  68****************..*************996542222226666******************999999998767799999999877661114578999***************9987 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   7.3e-10   3.3e-06      49     189 ..       2     143 ..       1     150 [. 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 7.3e-10
                  ----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T....TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE-----------...-..-------THHHHHHHHHH----S---EEEEEE--------- CS
    PF13561.1  49 vplDvtseedvselaekvkedlggkiDilvhsianspeer..vekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservipgyg...g..msvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraak 189
                  ++lDvt++e++ +l e+++ +   ++D l++ +++  +e    e+ l +++ ++l+++++++++  + +++a+ +  ++  +   + + ++a    i+  +   +  + ++KAaL + t+++A e+ r     + +   G ++t+ +k
  MMETSP0890-20130614|21583_1   2 IELDVTNDESIRTLPERIQYN---RVDLLINNVGVLHDETnkPERALNQVDPNWLRRSFDTNCVGAILTTQALSQ--ALRRTPNSIVINMSARVGSISDNRlggWysYRISKAALNQATKTMALEFKR-FDTAIVALHPGTTNTSLSK 143
                  689**************9877...59999999988665443366778899***********************77..6666666666666666666654332133226799****************9.9999988888888887665 PP

>> PF13092.1  Kinetochore complex Sim4 subunit Fta1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.4e-06     0.034      16      58 ..      44      86 ..      39     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.4e-06
    PF13092.1 16 alrqvvisFLsttFDcrvsplrlgsssLvaaleswletlgree 58
                 al qv  ++L+++FD+ +    l+++ L +al +  +++  + 
  MMETSP0890-20130614|21583_1 44 ALNQVDPNWLRRSFDTNCVGAILTTQALSQALRRTPNSIVINM 86
                 67777889***********************998877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 488.86
//
Query:       MMETSP0890-20130614|21584_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.4   2.1       0.36   10.4   1.4    1.5  1  PF13165.1 Protein of unknown function (DUF4001)


Domain annotation for each model (and alignments):
>> PF13165.1  Protein of unknown function (DUF4001)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.4   2.6e-05      0.36       2      27 ..      28      53 ..      27      54 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.6e-05
    PF13165.1  2 hIktlnkkslkkslkkgGCgECqtSC 27
                  +++l+k+++++ ++k++Cg C  SC
  MMETSP0890-20130614|21584_1 28 SLNKLEKNEMRNFMTKRACGYCCGSC 53
                 56899********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.40s 00:00:01.40 Elapsed: 00:00:01.07
# Mc/sec: 1552.03
//
Query:       MMETSP0890-20130614|21616_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   12.6   0.1      0.068   12.5   0.0    1.1  1  PF13988.1 Protein of unknown function (DUF4225)


Domain annotation for each model (and alignments):
>> PF13988.1  Protein of unknown function (DUF4225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.9e-06     0.068      15      63 ..      18      67 ..       4      74 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.9e-06
    PF13988.1 15 dselrkksaklyia.ikieeeekiikyvikgigivaGglqivaGiglckt 63
                 +++l+k+  +l  + +k + e + ++ v + +++  Gg+q+++G+ ++ +
  MMETSP0890-20130614|21616_1 18 AKDLSKDITELSDKvTKLVPEVEKFGKVATEFDLYKGGAQVFVGALVATV 67
                 4455555555554404455888889999*****************99733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       959  (0.0701434); expected 273.4 (0.02)
Passed bias filter:                      878  (0.0642188); expected 273.4 (0.02)
Passed Vit filter:                       101  (0.00738736); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.45s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 256.75
//
Query:       MMETSP0890-20130614|21612_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-54  182.9   0.0    1.9e-31  109.1   0.0    2.2  2  PF03381.10 LEM3 (ligand-effect modulator 3) family / CDC50 family


Domain annotation for each model (and alignments):
>> PF03381.10  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   1.4e-35   1.9e-31      11     149 ..      50     185 ..      30     206 .. 0.84
   2 !   71.8   0.0   3.4e-24   4.6e-20     176     278 .]     286     384 ..     260     384 .. 0.89

  Alignments for each domain:
  == domain 1    score: 109.1 bits;  conditional E-value: 1.4e-35
   PF03381.10  11 ieirYddceekast.atteeaskkpseceleftipeelkapvylyYkLtnfYqnhrryvkSrsdkQLrgka.vsksd..skeCkplktngseegkiivPCGliAnslFNDtfsllrksgkksevslskkgIawksdkekkfkk 149
                  i+ +Yd   ++ +    + e  +  +ec++++++++++k p+ +yY+++nfYqnhrryvkS s +QL  ++ +++++   +eC+ l  n     k+++PCGli+n+lFND   l+      +++++++k+Iaw+sd+++  k+
  MMETSP0890-20130614|21612_1  50 IRKQYDGSGTDDELaGCHIEVADAGTECQVTVRVDKKMKPPIHVYYEIDNFYQNHRRYVKSLSWAQLYHREvLREDElkDSECSLLYEN---GTKFLNPCGLIPNTLFNDVLLLT----APNDIQMKEKNIAWHSDVRDILKT 185
                  55667777776665533334455555*********************************************555555888899999885...889******************95....68999************9877765 PP

  == domain 2    score: 71.8 bits;  conditional E-value: 3.4e-24
   PF03381.10 176 leededfivWmrtaalptFrKlyrrieeedleaGt.yeleiennYpvssFkGkKsivlsttswlGgknkflgiaYlvvGglclvlgvvfllihllkprklgdks 278
                    + e+f vW+r+ alp+FrKly+ri ++++ + t + ++++nn++v+sF+GkK ivl+t      +  f+  aY++v++lcl+ +++f++ + ++pr++gd++
  MMETSP0890-20130614|21612_1 286 P-NSEHFAVWIRVHALPRFRKLYGRI-STTIDKDTdIVFTVSNNFDVHSFDGKKFIVLATGDL---SFAFIANAYIAVAALCLAGAIIFAALQSFRPRRMGDPK 384
                  3.489*********************.888888777************************886...678********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       627  (0.0458602); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:01.33
# Mc/sec: 713.50
//
Query:       MMETSP0890-20130614|21617_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-74  250.4   0.0    2.3e-74  249.8   0.0    1.3  1  PF00425.13 chorismate binding enzyme
    4.3e-31  107.7   0.0    6.5e-31  107.1   0.0    1.3  1  PF00117.23 Glutamine amidotransferase class-I
    5.8e-10   39.2   0.0    2.8e-08   33.7   0.0    2.5  2  PF04715.8  Anthranilate synthase component I, N terminal region
    2.8e-05   23.5   0.0    0.00013   21.3   0.0    2.1  1  PF07722.8  Peptidase C26


Domain annotation for each model (and alignments):
>> PF00425.13  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.8   0.0   6.6e-78   2.3e-74       2     257 .]     477     740 ..     476     740 .. 0.96

  Alignments for each domain:
  == domain 1    score: 249.8 bits;  conditional E-value: 6.6e-78
   PF00425.13   2 keeYaeavekakeairagdlykvvlsrrleaeleaavdplalyerlrknnpapysfllele.....ellgaSPElllsvegggrrveteplaGTrpr.gktpeedealaeelledeKeraEhlmvvdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkrameiIdelEeedRgvYaGavgyldadgeadlavaIRtavvkd......kelslgaGaGIvadSdpeaEyeEtlaK 257
                  +++Y +  ++a+e+i+agd+y+++l++++ea+++ +vdp+  y+rlr++npap + +++l      +l+++SPE+++s++ + + ve +p++GT pr +++ ++d+a aeel+++ K raE+lm+ dl+rndL +v  +++ +v++l ++e++++v++lv+t+eg+lk++ +++dl+ ++fP+g++tGaPk+r+++iI++lE+++Rg+YaG++g+++ dg+adl+v+IR+a+++       +++++gaG++ +a Sd ++E++E+l+K
  MMETSP0890-20130614|21617_1 477 EHKYSKLANEALERIAAGDSYEICLTTNFEARIR-DVDPWLYYKRLRSANPAPRASFIDLRsacgvALCSSSPERFISLQPS-GFVEAKPIKGTSPRiHENVDADRASAEELASSIKTRAENLMIADLLRNDLLRV--CDHAHVSKLAAIESFATVHQLVTTLEGQLKSEHDAIDLIFNTFPPGSMTGAPKRRTCDIIAQLESQERGPYAGTFGFIGLDGRADLSVVIRSALFSSsdadeySRITVGAGGALTALSDIHDEWQELLLK 740
                  679*****************************66.89*********************8888898889************66.7*************8889999********************************..6**********************************************************************************************5557999988**********************988 PP

>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   1.9e-34   6.5e-31       1     189 [.      25     222 ..      25     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: 107.1 bits;  conditional E-value: 1.9e-34
                  EEEE-S-SSHHHHHHHHHHTT..-EEEEEETTGGHHHH..HH....TTT--SEEEEE----TTTT....-CCHHHHHHHHGTTTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTTSCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS-GGGHHHHHHH CS
   PF00117.23   1 lliDnydsvtknleralrelg..vkvevvpndadaeei..le....klsnpdgilisgGpgspge....vegkieaikearenkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgkaallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssstpggpellfnfl 189
                  lliD+ ds+t+n++  l +++  ++  vv++d   ++   +e     l ++d++++s+Gpg+p++     + +  ++ ++++  +P+LG+CLG+Q la  +g  + +    + +g   r+   ++++l++g p  ++++++Hs++++ k+  ++ l v+a s+ g  i a+ ++++p +g+QFHPEs+ t++g+ +  nf+
  MMETSP0890-20130614|21617_1  25 LLIDCMDSYTENVAAWLGSANneLRPCVVSHDDAGLISdlKEhgarALDEYDAVVLSPGPGHPENpedfSNTAAGIALRCLDPSTPLLGVCLGHQGLAALYGYSISRLP-LPLHGVVDRVYFSPESRLFRGMPLGFKATRYHSLTAHLKD-PESPLRVVARSAIG-DILAVEHRTQPRFGLQFHPESVATEHGHLIAHNFM 222
                  59****************9995544556666653333354223554499**************99999888888888899999***********************999.9***********999*********************9855.6667*******888.7*************************999999995 PP

>> PF04715.8  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   8.3e-12   2.8e-08      43     131 ..     331     419 ..     287     426 .. 0.73
   2 ?    2.5   0.0     0.036   1.2e+02      20      76 ..     672     735 ..     663     749 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 8.3e-12
    PF04715.8  43 kakdgeislegdegekleeeepldaLrellarlrategslpeelpFtgGavGylgYDl...veelepklpskddlselPdaefllydtllvf 131
                  ++k+++i l++ ++ k   ++ l +Lr+ la+ + ++ +  e+l F  G+vGy+gY +   ++++e  +p +++ ++ Pda++l+ d+ lv+
  MMETSP0890-20130614|21617_1 331 TTKETQICLNT-NTIKERGKDLLPILRRELAKRQ-VNSKTLEDLGFNLGFVGYFGYGMrsqTRDYE-PVPFIQQCQKVPDAAMLFSDRSLVL 419
                  24444444444.3444444449999******999.5455579************************.6788666777**********99985 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.036
    PF04715.8  20 lLeSaegge..grysfigadplatlk..akdgeisleg.degekleeee..pldaLrellarlr 76 
                   LeS e g   g + fig+d +a l   +++   s ++ de ++++++    l+aL ++ ++++
  MMETSP0890-20130614|21617_1 672 QLESQERGPyaGTFGFIGLDGRADLSvvIRSALFSSSDaDEYSRITVGAggALTALSDIHDEWQ 735
                  79***955457**********7776655666666666665555555555667777777666655 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.8e-08   0.00013     102     217 .]     104     207 ..      94     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.8e-08
                  H------BB------HHHHHHH------EEE.............EEEEEEE--ET-STTTTS-HHHS--EEEEEEEE..-BHHHHH-EEEEEEE----EEEEEEE--S-B----S-TT CS
    PF07722.8 102 alergvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavslekgsllarllgaeeievnslHhqa..ikelakglevlAtaedgvieaieseeakyfvlgvQWHPE 217
                  +l+ + P+lg+C+G q l  ++g ++  +++     +            +v   ++s l r +    ++ + +H  +  +k+ ++ l+v+A+++ g i a+e+++  ++ +g+Q+HPE
  MMETSP0890-20130614|21617_1 104 CLDPSTPLLGVCLGHQGLAALYGYSIS-RLPL----PL------HGVVDRVYFSPESRLFRGMP-LGFKATRYHSLTahLKDPESPLRVVARSAIGDILAVEHRT--QPRFGLQFHPE 207
                  567789************777766654.5552....22......35677888898888888777.68999999997622677999******************99..4799******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:01.87
# Mc/sec: 1007.24
//
Query:       MMETSP0890-20130614|21640_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-22   78.2   4.1    3.2e-22   77.7   2.8    1.2  1  PF00957.16 Synaptobrevin
    9.8e-09   34.5   0.0    1.9e-08   33.6   0.0    1.5  1  PF13774.1  Regulated-SNARE-like domain


Domain annotation for each model (and alignments):
>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   2.8   4.8e-26   3.2e-22       3      88 ..     143     228 ..     141     229 .. 0.97

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 4.8e-26
   PF00957.16   3 dklskikaevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkmwwknmklliililvvlililiiiivic 88 
                  d l+++ ++v+ vk im+eNi+ +l++   l+ +++++e+Lq++a  Fk++a++l+ kmwwk +k++++++lv++++++ ii++i+
  MMETSP0890-20130614|21640_1 143 DVLNRTMEKVEGVKLIMQENIEIALKNCVSLEAIDKQAEDLQAQAGVFKTRAKTLRSKMWWKLCKMRLLVALVIICVLIAIIVPIV 228
                  67899******************************************************************************987 PP

>> PF13774.1  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   2.8e-12   1.9e-08      16      73 ..      60     117 ..      50     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.8e-12
    PF13774.1  16 klsyesgnyvfhylv.edglvylvvadksyprrlafafLeeikreFlstyggsqiesas 73 
                    +++ g+ v h  + +++lvy++v++ syp r a+a+Lee+ r F+++ g +++ +a 
  MMETSP0890-20130614|21640_1  60 HYTFSAGATVWHMQAsDQQLVYVCVTSPSYPVRHAHALLEELGRTFVAKCG-DKAATAR 117
                  6799999********9999*******************************7.5566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       891  (0.0651697); expected 273.4 (0.02)
Passed bias filter:                      619  (0.045275); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:01.23
# Mc/sec: 463.69
//
Query:       MMETSP0890-20130614|21646_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   12.2   0.1       0.45    9.9   0.2    1.8  2  PF04263.11 Thiamin pyrophosphokinase, catalytic domain


Domain annotation for each model (and alignments):
>> PF04263.11  Thiamin pyrophosphokinase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.079   1.1e+03      10      27 ..      64      80 ..      55      88 .. 0.79
   2 ?    9.9   0.2   3.3e-05      0.45      57     115 ..     134     194 ..     127     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.079
                 HHHHHCTCEEEEE----H CS
   PF04263.11 10 rdllkkadllvavDgGan 27
                 r l+k+  ++++ D G  
  MMETSP0890-20130614|21646_1 64 R-LMKHRPVRIGLDNGQR 80
                 3.5899999*****9974 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 3.3e-05
                  H-TTEEB----TTS-HHHHHHHHH..TT-SECEEEEE------HHHHHHHCHHHHHHCTTS CS
   PF04263.11  57 eagaklvktpekdktDlelAlkla..lqleadeivvlgalggRlDhvlanlnlllrlakdd 115
                  ea+ + v+++  d+tD e + +l   +   +dei +l  l  R+D ++a+ + l  ++kd+
  MMETSP0890-20130614|21646_1 134 EAAREAVQQAFDDDTDSETSGDLNcvRISLQDEIAFLSQLHRRIDNTMAKKSFLSASKKDM 194
                  455678899999******99777654777788*****************998888777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       865  (0.063268); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 686.52
//
Query:       MMETSP0890-20130614|21660_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-11   43.3   2.2    4.5e-11   42.9   1.5    1.2  1  PF01730.11 UreF


Domain annotation for each model (and alignments):
>> PF01730.11  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   1.5   3.3e-15   4.5e-11      11     142 ..      59     188 ..      51     192 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 3.3e-15
                  HHHHHHTTHHHHTHHHHHHHHHHHHHTT-HHHH---HHHHHHH-.-SHHHHHHHHH---HHHHHHHH-HHHHHHHH-SS--HHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHTT--S----HHHHH CS
   PF01730.11  11 wledqLelglarsDaallakalralrrgdaaalrelddwllatr.etselrleteqmGrsllellaeelqerlkqasaevtypvafalaaaalgipleeallaylygwaenlvsaAvrlvpLGqtagQrilar 142
                   +++ L  ++ ++ a++  +a+++  ++  + l+ ld+ l a+    ++ +l+++++G++l +++++ +  ++  a +  + ++af+++a+++ ++ e++ll++++  +    saAvrl+ +G+ a+  ++a+
  MMETSP0890-20130614|21660_1  59 VISN-LAMNQHSLYAPFAFAAMQQHIENYDDFLMMLDENLDALLcSHAQAHLASTRQGAALNRICNS-MITNYTGA-KLRHGAIAFGVLAKHMALSAEAMLLVFVHTAIRDAFSAAVRLGIIGPLAALPLQAK 188
                  5444.777788888888888888777777789999***9999751557789****************.55555555.78899*******************************************99887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 794.41
//
Query:       MMETSP0890-20130614|21661_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-08   32.9   5.2    6.2e-08   32.2   3.6    1.3  1  PF13906.1 C-terminus of AA_permease


Domain annotation for each model (and alignments):
>> PF13906.1  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   3.6   4.5e-12   6.2e-08       1      47 [.      90     135 ..      90     138 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.5e-12
    PF13906.1   1 FkvPlvPllPalsIliniyLmlqldaltwirfvvwlliglliYfaYg 47 
                  F++P vP+lP l+I++n++Lm+q ++l  + +++  +  +l+Yf Y+
  MMETSP0890-20130614|21661_1  90 FQAPGVPYLPGLAIFLNFMLMAQYTWLDHVYLFILYAAAYLFYF-YS 135
                  99***************************************999.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.65
# Mc/sec: 707.85
//
Query:       MMETSP0890-20130614|21710_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0021   17.8  15.8       0.21   11.4  11.8    2.8  2  PF00170.16 bZIP transcription factor
  ------ inclusion threshold ------
      0.022   14.4  13.9      0.022   14.4   9.7    3.0  4  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4  11.8   3.1e-05      0.21       4      49 ..      23      68 ..      21      83 .. 0.73
   2 ?    3.1   0.1     0.012        80      30      52 ..      70      92 ..      65     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.1e-05
                 XCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....... CS
   PF00170.16  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                 +k   r+++NRe Ar sR+RK+++++ Lee+ +++    ++ +++ 
  MMETSP0890-20130614|21710_1 23 SKMDARRARNREHARLSRERKRKQMAILEEENESIRRDLDEIQNQR 68
                 67788*******************9999888777665554444444 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHH.......HHH CS
   PF00170.16 30 eLeekvkeLeaeNkaLkkeleel 52
                 +L+   ++ eaeNk+L+  ++++
  MMETSP0890-20130614|21710_1 70 HLALLLEQSEAENKRLRAWIDTY 92
                 6777788899*******988875 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   9.7   3.2e-06     0.022       7      47 ..      27      67 ..      21      74 .. 0.87
   2 ?    0.7   0.0      0.06   4.1e+02      35      49 ..      76      90 ..      71      92 .. 0.78
   3 ?   -2.1   0.1      0.45   3.1e+03      38      54 .]     139     155 ..     130     155 .. 0.74
   4 ?   -3.2   0.3         1     7e+03      31      35 ..     190     194 ..     186     203 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.2e-06
   PF07716.10  7 erRrrNreAArrsRekkkakeeeleervkeLeeeNaqLrqk 47
                  rR rNre Ar sRe+k++ ++ lee+ ++ +++ ++++++
  MMETSP0890-20130614|21710_1 27 ARRARNREHARLSRERKRKQMAILEEENESIRRDLDEIQNQ 67
                 4666*******************************999987 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.06
   PF07716.10 35 keLeeeNaqLrqkve 49
                 ++ e+eN +Lr+ ++
  MMETSP0890-20130614|21710_1 76 EQSEAENKRLRAWID 90
                 567999999998665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.45
   PF07716.10  38 eeeNaqLrqkveqLeke 54 
                  e++N  + q+++  ++e
  MMETSP0890-20130614|21710_1 139 ERQNIMFYQQHSRRQQE 155
                  78888888888887776 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 1
   PF07716.10  31 eervk 35 
                  +++ +
  MMETSP0890-20130614|21710_1 190 QQKNQ 194
                  22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1728  (0.12639); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.44s 00:00:01.03 Elapsed: 00:00:00.82
# Mc/sec: 613.70
//
Query:       MMETSP0890-20130614|21705_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-36  122.9   0.1    7.8e-36  122.9   0.1    1.8  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.1   5.7e-40   7.8e-36       3     172 ..      30     231 ..      28     233 .. 0.92
   2 ?   -2.1   0.5      0.14     2e+03     105     123 ..     357     375 ..     351     380 .. 0.64

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 5.7e-40
   PF01529.15   3 syiltyftdPgyvprssqdesneeeedkeekqraiqteaelknnekrfCkkCqtikpprshHCriCnkCvlkfDhHCpwvnncIGarNhkyFllfllyltlllvialllslrifvryvlltkqssvniisnls....................................killvvlsaiallfllfllafhlylilrnmTtieele 172
                  s++ ++ft+Pg vpr      +    d +  ++a  + + + +  k +C++C  +kppr+hH ++ ++C++k Dh+Cpw+nn IG rNhk Fllf++y++l++ +al+l +r ++  +++ ++s v  ++ l                                     ++++ v+++++ lf++++l+ ++  +++n+  i++l+
  MMETSP0890-20130614|21705_1  30 SHMTAMFTNPGAVPRI----AEPLPGDAQRLKEALAQNSTQRKRTKGWCHRCVAYKPPRAHHDSVTGRCIVKLDHFCPWTNNAIGVRNHKSFLLFIFYTFLMCSYALALLFRLAYLSMQTPDESNVPQVKKLRgrrssdlvvvtplpiieanasflleetrpqieigfnCVIVGVFAILFGLFTSCMLCDQWSVLSTNVAKIDRLK 231
                  67889***********....555555566666666666666888899**********************************************************************************9999***********************************999999999*********************99999886 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.14
   PF01529.15 105 lvialllslrifvryvllt 123
                  + ++l+l+l ++++yvl++
  MMETSP0890-20130614|21705_1 357 VSYYLILYLSSILYYVLSF 375
                  5566666777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.48s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 1284.71
//
Query:       MMETSP0890-20130614|21720_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   18.3   0.2      0.011   14.8   0.1    2.2  2  PF06008.9 Laminin Domain I
  ------ inclusion threshold ------
      0.022   12.9   0.1      0.026   12.6   0.1    1.1  1  PF05911.6 Plant protein of unknown function (DUF869)


Domain annotation for each model (and alignments):
>> PF06008.9  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.022   1.5e+02      86     113 ..     126     153 ..     104     169 .. 0.59
   2 !   14.8   0.1   1.6e-06     0.011     218     261 ..     192     235 ..     176     237 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.022
    PF06008.9  86 gnakqlaekikklranikeileklatlg 113
                  ++a ql  +++ l+ ++  ++++l +  
  MMETSP0890-20130614|21720_1 126 SDACQLLNQVHHLALTVDDLTSDLVARE 153
                  4444444444444444444444443322 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.6e-06
    PF06008.9 218 qkrlreieekkeeveelkeqieetlatgrdsLeqanllLqeldq 261
                  q ++r+ e+  e+++ +k+++e+ latgr s++ ++l+L+++++
  MMETSP0890-20130614|21720_1 192 QLNSRDTERALEQLQLQKRTLEDDLATGRRSIDDVRLELRAVEN 235
                  56788999999*****************************9986 PP

>> PF05911.6  Plant protein of unknown function (DUF869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.8e-06     0.026     573     642 ..     153     246 ..      86     252 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-06
    PF05911.6 573 lksseveissld..............................evktaeekstleeletlklekeklevelskckedleesklklketekkleelkselka 642
                  +++ e      +                               +++ ++  t+ +le+l+l+k+ le+ l+  +  ++  +l+l+ +e++ +el++ l  
  MMETSP0890-20130614|21720_1 153 ENQVE------EetnlpvvtpleslitlngapslwaepphiaASRQLNSRDTERALEQLQLQKRTLEDDLATGRRSIDDVRLELRAVENRRRELNNSLAL 246
                  12222......122333456667777777788888888888778888899999******************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.61s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 770.47
//
Query:       MMETSP0890-20130614|21728_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.41s 00:00:00.69 Elapsed: 00:00:00.52
# Mc/sec: 244.24
//
Query:       MMETSP0890-20130614|21722_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.66
# Mc/sec: 406.65
//
Query:       MMETSP0890-20130614|21751_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-15   54.1  17.8    8.9e-06   25.2   0.0    6.8  7  PF00400.27 WD domain, G-beta repeat
    0.00022   19.4   3.6     0.0092   14.0   0.0    3.1  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.3e-09   8.9e-06       5      39 .]       9      43 ..       6      43 .. 0.95
   2 !   15.5   0.1   1.5e-06      0.01       9      38 ..      57      92 ..      52      93 .. 0.94
   3 !    8.9   0.0   0.00019       1.3      11      39 .]     122     151 ..     112     151 .. 0.80
   4 !    7.3   0.0    0.0006       4.1      16      37 ..     188     207 ..     178     208 .. 0.81
   5 !    3.7   0.0    0.0083        57       8      37 ..     220     249 ..     214     251 .. 0.76
   6 ?    0.8   0.4     0.069   4.7e+02      12      39 .]     268     301 ..     258     301 .. 0.69
   7 ?   -2.0   0.1       0.5   3.4e+03       8      19 ..     311     322 ..     303     332 .. 0.68

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.3e-09
                 EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 + l+gH++ + + ++ +  +++a++S+Dgt r+Wd
  MMETSP0890-20130614|21751_1  9 RDLYGHEDRCFDSSVLDGERFVATASEDGTARVWD 43
                 679*******************************9 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.5e-06
                 SSSSSEEEEEEESS.......STEEEEEETTSEEEEE CS
   PF00400.27  9 gHtspVtcvafspd.......gpllasgSrDgtirlW 38
                 +H + V  va++p         p+la++ +Dg+ ++W
  MMETSP0890-20130614|21751_1 57 EH-HEVLRVAWAPAivsqvagAPILATANADGSAHVW 92
                 68.99******************************** PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00019
                  SSSEEEEEEESS..STEEEEEETTSEEEEEE CS
   PF00400.27  11 tspVtcvafspd..gpllasgSrDgtirlWd 39 
                     ++ +++++d    +l++g+    + +Wd
  MMETSP0890-20130614|21751_1 122 GEQIYGCSWAQDetEAWLVTGCG-DEVLVWD 151
                  56799******************.5566665 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0006
                  EEEEESSSTEEEEEETTSEEEE CS
   PF00400.27  16 cvafspdgpllasgSrDgtirl 37 
                  ++ + ++  +las+ +Dgt+r+
  MMETSP0890-20130614|21751_1 188 DIQILDN--RLASALSDGTVRI 207
                  5555555..9***********8 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.0083
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirl 37 
                  +   + V ++++s   ++la +   g + +
  MMETSP0890-20130614|21751_1 220 STGGHRVAAISWSCKTNHLAVAATLGQVLI 249
                  44558999************9976565555 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.069
                  SSEEEEEEESS......STEEEEEETTSEEEEEE CS
   PF00400.27  12 spVtcvafspd......gpllasgSrDgtirlWd 39 
                  s+ + +a+  +      +  l+s  +Dg ++ W+
  MMETSP0890-20130614|21751_1 268 STLYGCAWFYHhqddfkQITLLSWASDGHLYFWN 301
                  5556666666666666666788888889988886 PP

  == domain 7    score: -2.0 bits;  conditional E-value: 0.5
                  ESSSSSEEEEEE CS
   PF00400.27   8 rgHtspVtcvaf 19 
                   +H  +V +++f
  MMETSP0890-20130614|21751_1 311 LEHDTTVISLDF 322
                  456667766666 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-06    0.0092     223     256 ..      19      52 ..      13      93 .. 0.79
   2 !    4.1   0.5    0.0014       9.3     149     195 ..     224     268 ..     204     293 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-06
    PF11715.3 223 vsssevegqtfvftlsrDgkLRvWnletgqclrt 256
                  ++ss ++g+ fv+t s Dg+ RvW++  + c+  
  MMETSP0890-20130614|21751_1  19 FDSSVLDGERFVATASEDGTARVWDIYSYECINI 52 
                  577889**********************999433 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0014
    PF11715.3 149 pllvavta.vseselvvsladgglliltrssgdtdggawketkyssss 195
                  ++ +a++    +++l+v+++ g++li++++s     ++ ++++ s+ss
  MMETSP0890-20130614|21751_1 224 HRVAAISWsCKTNHLAVAATLGQVLIFDTNS---WHHVASTSTSSPSS 268
                  444444446689*****************99...55555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.64
# Mc/sec: 1464.02
//
Query:       MMETSP0890-20130614|21759_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.09   12.0   0.0        0.2   10.9   0.0    1.5  1  PF03943.8 TAP C-terminal domain


Domain annotation for each model (and alignments):
>> PF03943.8  TAP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05       0.2      19      33 ..      57      71 ..      52      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.5e-05
                 HHHHHHTTT-CHHHH CS
    PF03943.8 19 qkclednnWdYerAa 33
                  k+l+++ Wd+ rA+
  MMETSP0890-20130614|21759_1 57 PKLLQQCTWDFLRAL 71
                 69**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.83
# Mc/sec: 744.89
//
Query:       MMETSP0890-20130614|21756_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-22   77.1  12.5    1.2e-21   76.8   1.6    2.2  2  PF03151.11 Triose-phosphate Transporter family
    6.8e-16   58.3  26.0    1.2e-11   44.6   4.6    2.9  3  PF00892.15 EamA-like transporter family
    7.9e-08   32.3  17.4     0.0002   21.4   3.1    2.6  2  PF13536.1  Multidrug resistance efflux transporter
     0.0033   16.2   9.6      0.022   13.5   6.7    1.9  1  PF08449.6  UAA transporter family


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   2.0    0.0027       9.3      80     150 ..     136     206 ..     102     207 .. 0.79
   2 !   76.8   1.6   3.5e-25   1.2e-21       2     152 ..     219     365 ..     218     366 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0027
   PF03151.11  80 yvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                   +++ll  +++a +    ++  l+   + + +++ ++  ++  vl+ +++++ki+  ++l l+  + Gvvl
  MMETSP0890-20130614|21756_1 136 DIITLLPVAFCAAGAHSASVFALSAGAVSFGQIVKAAEPAFAAVLGTLFYNKKISKAKWLCLIPVIGGVVL 206
                  4677888888888888888888888888899*********************************9999986 PP

  == domain 2    score: 76.8 bits;  conditional E-value: 3.5e-25
   PF03151.11   2 filalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpk.lgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  +i+a +a+l+ a++    +++++    ke   ++ + ++ ++++a++++++++++ ++ + +g++++ ++      +  + + +l++g+ ++l+n +a+l+++++S++t sva+++krv+viv +++++g+ + +l+ lG+ i + Gv+lYs
  MMETSP0890-20130614|21756_1 219 LISASIANLFAAVKANENKKCMDTPGLKERIGSVGNQYALTTILATLITIPLIFVKGEAAkIGQFVTLFQD-----NPVVRFNILASGLYFYLYNELATLTIKKTSAVTQSVANTAKRVIVIVGVALVLGESLPPLKLLGCTIGIGGVFLYS 365
                  68999**************************************************9998725555655555.....779999*********************************************************************8 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.66   2.3e+03      64      78 ..      70      84 ..      51      96 .. 0.67
   2 !   44.6   4.6   3.4e-15   1.2e-11      19     125 ..     102     208 ..      96     209 .. 0.94
   3 !   23.1   4.4   1.5e-08   5.1e-05      25     125 ..     258     365 ..     252     366 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.66
   PF00892.15 64 tvlgyllffyalkkt 78
                  +l++++++ +  + 
  MMETSP0890-20130614|21756_1 70 LLLYFFFWYLGNYYY 84
                 345555555554444 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 3.4e-15
   PF00892.15  19 pltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  p+ i a++l++++i +++l +   +++++  + kdi+ ll +++   + +  +  +al+ + +s+  ++ ++eP+f+++l+ l++++k+++ ++l ++ ++ Gv+l +
  MMETSP0890-20130614|21756_1 102 PVLISALQLFVGSIyAIFLWVAPDSRKFPTVNFKDIITLLPVAFC-AAGAHSASVFALSAGAVSFGQIVKAAEPAFAAVLGTLFYNKKISKAKWLCLIPVIGGVVLAS 208
                  7899**********888888888888899***********99988.5**********************************************************986 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.5e-08
   PF00892.15  25 yrlliagillilllfllrep.......ialislkdilallllgllgtvlgyllffya....lkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  ++ ++a+++ i l+f ++e        + + ++     ++ + +l+++l+++l++++    +kktsa++ s+ +++  v++i+  +l+lge+l + +llg+ +++ Gv+l +
  MMETSP0890-20130614|21756_1 258 LTTILATLITIPLIFVKGEAakigqfvTLFQDNP----VVRFNILASGLYFYLYNELatltIKKTSAVTQSVANTAKRVIVIVGVALVLGESLPPLKLLGCTIGIGGVFLYS 365
                  5667777444444444444478864443333333....33333444556666666555556************************************************976 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   3.1   5.8e-08    0.0002      30     109 ..     133     212 ..     104     215 .. 0.74
   2 !   17.0   2.9   1.3e-06    0.0044       3     106 ..     258     366 ..     256     369 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.8e-08
    PF13536.1  30 krnpllwlllagllgfglfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqveea 109
                   ++ ++ ll ++++ +  +  ++++A++ +     +++ a  p++aa+l++l++++k++k  +l+++ ++ Gvvl  v e+
  MMETSP0890-20130614|21756_1 133 NFKDIITLLPVAFCAA-GAHSASVFALSAGAVsFGQIVKAAEPAFAAVLGTLFYNKKISKAKWLCLIPVIGGVVLASVKEL 212
                  4455555555566555.4455667788887752445677789*********************************999875 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.3e-06
    PF13536.1   3 lrylfmllflllivllrk...rlkellrelkrnpllw.lllagllgfglfyalltlAakhapglvaaital.tpllaallslllfkeklpkrellaslliliGvvlmqv 106
                  l++++++l+   ++++++   ++++++ ++++np+ +  +la+ l+f l+  l tl  k ++++++ ++++   +++++ + l+++e lp   ll + + + Gv+l  +
  MMETSP0890-20130614|21756_1 258 LTTILATLITIPLIFVKGeaaKIGQFVTLFQDNPVVRfNILASGLYFYLYNELATLTIKKTSAVTQSVANTaKRVIVIVGVALVLGESLPPLKLLGCTIGIGGVFLYSL 366
                  666777777777777766333688************636788888898999999999999998888888887788889999999*********************9765 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   6.7   6.4e-06     0.022      29     298 ..      93     367 ..      68     370 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.4e-06
    PF08449.6  29 s......kfgnlltfvqflvvalvgllellktkklkkrkiplktYvlivalfflssvlnneaLkyis...yPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygkss......kemlfyshllslpfflllllsiktgelasavsfllkhpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkall 298
                  +       f+ l++  q +v ++++++     +++k ++++ k+ + +  + f + ++  ++   +s   + +  i+k++ +    +lg+l+++k+ s+ + l+ + +  Gv+++++++  ++  +   +          ++a l+ a+ ++ + k +   g ++      ++  +++ l  l+ + l++++ +  ++ ++v++++ +p v f +l+  l  y+      l+i++++a+t ++  t+ +++ ++   l+ g +l + ++lG ++ ++g++l++l+
  MMETSP0890-20130614|21756_1  93 NaagganGFPVLISALQLFVGSIYAIFLWVAPDSRKFPTVNFKDIITLLPVAFCAAGAHSASVFALSagaVSFGQIVKAAEPAFAAVLGTLFYNKKISKAKWLCLIPVIGGVVLASVKEL-DFAVSALIS---------ASIANLFAAVKANENKKCMDTPGLKErigsvgNQYALTTILATLITIPLIFVKGEAAKIGQFVTLFQDNPVVRFNILASGLYFYLYNELATLTIKKTSAVTQSVANTAKRVIVIVGVALVLGESLPPLKLLGCTIGIGGVFLYSLA 367
                  3333456778888888888888887777666667888888888888776666666666555544444222677789*************************************9987655.555555553.........46999999***********777776665555455555555555555544444433667777777778****************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 1287.19
//
Query:       MMETSP0890-20130614|21768_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 197.12
//
Query:       MMETSP0890-20130614|21778_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 153.52
//
Query:       MMETSP0890-20130614|21811_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-106  356.3   0.0   1.4e-106  356.1   0.0    1.0  1  PF00285.16 Citrate synthase


Domain annotation for each model (and alignments):
>> PF00285.16  Citrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.1   0.0    1e-110  1.4e-106       1     356 []      51     430 ..      51     430 .. 0.96

  Alignments for each domain:
  == domain 1    score: 356.1 bits;  conditional E-value: 1e-110
                  ----------SSEEE------EEE---BHHHHHH.H--.......HHHHH.HHHH------HHHHHHHHHHHHHT----TTT---GGGS-S---HHHHHHHHHS----.............------HHHHHHHHHHHHHHHHHHHHHHHH---------TTS-HHHHHHHHH..----..-TTHHHHHHHHHHHS--.SS-HHHHHHHHHHTTT--HHHHH---------------TTTHHHHHHH-.....--.....GGGHHHHHHHHHHHT---------S-SS--HHHHHHHHHHHHH-TT...-HHHHHHHHHHHHHHHT.TGG.G...----HHHHHHHHHHH----G.GGHHHHHHHHHT---HHHHHHHHT.T------ CS
   PF00285.16   1 GlegvvaaeteissidgekgkllYrGydiedlae.kss.......feeva.ylLltgelptkeeleefkeelaerrelpeevakvikalpksahpmavlraavsalaaydke.......eekdesaeevlekalrliaklptiaaaiyrarkgkepiepdpelsyaenflymlgakgeepseeeaealdlalilhaDH.glnaSTftarvvaStlsdlysavsaaigaLkGplHGgAneevlkmleei.....gs.....eeeveeyiekaldkgerimGfGHrvYkteDPRakilkelaeelaaekgddellelaekleevaledlkek.k...lypNvDfysgvvlkalgipe.elftplFavsRvvGwlAhvieqleknnkiiRP 356
                  G +gv+++ +e+s +d+++g +++rG++i +l++  ++       ++e++ +lLltge+ptke+ +++++el++r++lp++v+++++a+pk++hpm++++ +++a ++ +k+        +k++++e ++e++l+++ak+p iaa +yr++  + +++ d++l+y  nf++mlg+k    +e++ e+++l+l++h DH g+naS++t+++v+Stl+d+y ++++++++L+GplHG+An+evl +++++      +     e++++++ +++l++g++i+G+GH+v++++DPR+++++++a +++    dd+l+++++++ +v++++l+e+ k   +ypNvD +sgv+l+++g+++ +++t+lF+vsR++G l+++ ++++ + +++RP
  MMETSP0890-20130614|21811_1  51 GARGVKCMLWETSLLDASEG-IRFRGHSIPELQNiLPTfrqggepIPEALtWLLLTGEVPTKEQCDSLTSELHARSSLPTHVVSMLNAVPKKMHPMTQFALGLQACQTESKFaeayqqgVSKSKYWEVAYEDILDVLAKVPEIAALVYRNTYFDGVVQRDDSLDYSGNFCRMLGFK----DEAFDELMRLYLVIHSDHeGGNASAHTTHLVGSTLADPYLSYVGGLNSLAGPLHGLANQEVLGWIQDLqakfqAEgktvnEQTITDFAWETLNAGKVIPGYGHAVLRQTDPRYTCQRDFALKYM---PDDPLFKIVDTVFKVMPKVLTEHgKtknPYPNVDSHSGVLLYHYGFTQyQYYTVLFGVSRAIGALSQLFWDRALGLPLERP 430
                  899*****************.*************99999******888888*********************************************************9999*******99****************************************************774....688*****************************************************************766651156788****************************************5555...9******************998844899****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.41s 00:00:01.15 Elapsed: 00:00:00.99
# Mc/sec: 1077.15
//
Query:       MMETSP0890-20130614|21817_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   17.9   0.0      0.004   17.3   0.0    1.3  1  PF12796.2 Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.9e-07     0.004      26      77 ..      87     141 ..      48     151 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.9e-07
    PF12796.2  26 getpLh.lAaeagnleivklLleagadvnakd..kegntpLhlAvrnghlelvkl 77 
                  +++pL  +Aae+++  +++lLl+ ga   a +  ++g+tp  +A+  g+l+++ +
  MMETSP0890-20130614|21817_1  87 SDRPLIwYAAENDDPIAAELLLSLGAASTAFSptASGRTPYQHAMDRGNLKVLTV 141
                  4457765899999999999999999999887788999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 757.25
//
Query:       MMETSP0890-20130614|21823_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   53.6   0.0    2.8e-14   53.3   0.0    1.1  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.043   13.0   0.0    1.1  1  PF00328.17 Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   4.1e-18   2.8e-14      23     157 ..      15     168 ..       1     169 [. 0.78

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 4.1e-18
                  C.....--B-----HHHHHHHTHHHH......TTHCESEEEEESSHHHHHHHHHHCCCCE..............EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHH..HCCTSTTTSS.CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHHH CS
   PF00300.17  23 d.....vpLtekGreqarelgkkLkr......adlqidavytSplkRaiqTaeilleeld..............ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkr..dkkefrppegesladvyeRvapfleelieakdkgenvlivsHggvlra 157
                        ++Lte+Greqa ++g +L +      ad+   + y+S+++Ra+qT ei++ e++              ++i   ++Lrerdfg  +g+++       p       r  ++   ++++ es+a v++R++++++ l + ++++e + ++sH+ v + 
  MMETSP0890-20130614|21823_1  15 MvasrqHELTENGREQAVSAGVSLWKemerlnADVDSLVLYSSNFTRARQTKEIIAYEIQrqrqlktgifdgpfCRIGLLENLRERDFGIHDGQNTGAYDLIWP-------RdlEDATSSVDGVESVASVCQRLSDMVQLLEK-RHDNELIGLCSHADVCQI 168
                  33333235*************995554666666777777******************999999999**********************9555777744333333.......233444557779*******************5.8999999******99875 PP

>> PF00328.17  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.3e-06     0.043      62     114 ..      22      71 ..      11      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.3e-06
                  SB-----HHHHH---HHHHHTCCCCTTS..TTTEEEEEESSHHHHHHHHCCCH CS
   PF00328.17  62 glThsGrkqaeelGeqlrqrYpgllrdhltyedvkirssserRvlaSAqafaa 114
                  +lT  Gr+qa+  G +l +    l+ d    + +  +ss+  R +++ ++ a+
  MMETSP0890-20130614|21823_1  22 ELTENGREQAVSAGVSLWKEMERLNADV---DSLVLYSSNFTRARQTKEIIAY 71 
                  4**************************7...9***************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.93
# Mc/sec: 554.00
//
Query:       MMETSP0890-20130614|21831_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   16.6   0.0     0.0055   16.2   0.0    1.2  1  PF00085.15 Thioredoxin


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     4e-07    0.0055       6     103 ..      31     130 ..      26     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4e-07
                  SHHH..HHHHHHH..HHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEEESSSSEEEEE---.-HHHHHHHHHH CS
   PF00085.15   6 tken..feeevak..sdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlklfkngkkveevegarekeklvaflkk 103
                  t+++  f+++v++   + +++v f    C  C  l+    +l +  ++ v la vd+de+ +la +++      l+lf ++k  +  +++r++ +l afl++
  MMETSP0890-20130614|21831_1  31 TDATfdFQTQVMAgmTTGDWFVSFCC--CDDCADLSGLALELGQIENNYVNLATVDADEELKLAVRFDAVTHSRLILFSKSKMYHYDSENRTTPALRAFLDA 130
                  55552255556554345677777764..899***************99********************************9998766677999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 687.38
//
Query:       MMETSP0890-20130614|21856_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.075   13.2   0.0       0.11   12.7   0.0    1.2  1  PF12867.2  DinB superfamily
       0.28   10.2   1.2       0.31   10.0   0.8    1.1  1  PF00695.14 Major surface antigen from hepadnavirus


Domain annotation for each model (and alignments):
>> PF12867.2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05      0.11      16      88 ..      25     142 ..      19     146 .] 0.69

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
    PF12867.2  16 lteeelnrqpspgkwsiawllaHladteelwlerlr..................geeap..............................rpayddltdpslaealaylaevrarllellea 88 
                    ee +n +psp++ ++    +H+++ +  ++  +                   g                                  r + + +t+p++ + ++  +  r+++l+++++
  MMETSP0890-20130614|21856_1  25 TVEEKINIEPSPPSPPVCDETEHINVLDTTLVQEVLaeepvktetqlskvglpfG---LqapdlsqnkdnhpthstavlspwffiggppRFGEPNETPPDPKKRKQLKRNRRQAALDAINE 142
                  45899*********************99988877774444454444444444442...044455555555556677777777766666666777777788888888888888888888876 PP

>> PF00695.14  Major surface antigen from hepadnavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8   4.5e-05      0.31      73     139 ..      32      99 ..      19     129 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.5e-05
   PF00695.14  73 rkPtPltpPlrdstpeedkkakeafkqyleerpkeaetaapaqgklsptedPll.eakslieskvavi 139
                   +P P +pP  d t++ +    +  ++ l+e p ++et+++  g +++ + P l ++k   +++++ +
  MMETSP0890-20130614|21856_1  32 IEPSPPSPPVCDETEHINVLDTTLVQEVLAEEPVKTETQLSKVGLPFGLQAPDLsQNKDNHPTHSTAV 99 
                  579**************************************999888888885414555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 564.30
//
Query:       MMETSP0890-20130614|21857_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   25.4   0.1       0.23   12.3   0.1    2.2  2  PF10937.3 Protein of unknown function (DUF2638)


Domain annotation for each model (and alignments):
>> PF10937.3  Protein of unknown function (DUF2638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   1.7e-05      0.23       1      18 [.      28      45 ..      28      62 .. 0.83
   2 !   12.2   0.0   1.8e-05      0.25      62     113 .]      52     105 ..      44     105 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
    PF10937.3  1 kPmIkFvGkrhivksvdh 18
                 +P+IkF+Gkr+ vk+ ++
  MMETSP0890-20130614|21857_1 28 VPLIKFLGKRNHVKRDQT 45
                 6*********99998554 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.8e-05
    PF10937.3  62 segsigsssaaslgsv...rpkkegevfdrseLparfrrkplteaEieaiesGGa 113
                  +e +  +s+a++++ +     +  ++  +   L a + r p++++Ei a+ sGGa
  MMETSP0890-20130614|21857_1  52 KEVKPPTSTAHAKQDItpiIMNP-QDTQNFLALGAFYGRPPVSDEEIAAVASGGA 105
                  44444455555555552222233.67889999**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 339.22
//
Query:       MMETSP0890-20130614|21894_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-44  150.9   0.1      4e-44  150.5   0.1    1.1  1  PF13301.1  Protein of unknown function (DUF4079)
  ------ inclusion threshold ------
      0.011   14.6   0.5      0.051   12.5   0.2    2.1  2  PF11139.3  Protein of unknown function (DUF2910)
      0.066   12.4   1.1        2.6    7.2   0.2    2.4  2  PF00033.14 Cytochrome b(N-terminal)/b6/petB


Domain annotation for each model (and alignments):
>> PF13301.1  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.1   8.8e-48     4e-44       2     175 .]      76     264 ..      75     264 .. 0.89

  Alignments for each domain:
  == domain 1    score: 150.5 bits;  conditional E-value: 8.8e-48
    PF13301.1   2 lallHPvlmillvfpllglalylgwqarrrrlkenlgrwltaavvvavllalavsia...................qvellilaltetrkellkaksrdkhyrlgsllltlmvllllggqletyrrtgklfwspHlwaGlalvgLlalsaalvpeiqkgkkeraRrlHialNvlalllfl.wqaitGlrillki 175
                  +++lHP+ m+++ f+ +g+a+y g+q+rr r+ +   ++ +a +v+ + ++  ++ a                   +++++++ l  ++ +l ++++rd h+ +gs+ll+++v ++++g ++ty+r gklf++pHl+aG+a+v L+al+a+lvp++qkgk+ +aR++H+a+N++ ++lf+  q++tGl+i +k+
  MMETSP0890-20130614|21894_1  76 ISFLHPIAMGFS-FFATGYAGYTGFQWRRLREMTG--ELSQAKKVAKEKTEA-YESAlaaageggsvpsatltaknEAQAMVDSLSVEVSSLREGNFRDVHFSVGSVLLAIGVPFAIEGPVNTYMRAGKLFPGPHLYAGAAVVSLWALAASLVPQMQKGKD-WARQAHVAINAVTFGLFAyYQVPTGLEIAQKV 264
                  689*********.********************99..444444444443333.333336888999999999*99999999999999*************************************************************************88.*****************846********9986 PP

>> PF11139.3  Protein of unknown function (DUF2910)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.14   6.3e+02     180     213 ..     151     184 ..     139     190 .. 0.55
   2 ?   12.5   0.2   1.1e-05     0.051     168     213 ..     213     258 ..     207     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.14
    PF11139.3 180 avlerlkdwlrshrrlilavllgvvGllllaqGl 213
                  a++++l+  + s r+  +  + + vG +lla G+
  MMETSP0890-20130614|21894_1 151 AMVDSLSVEVSSLREGNFRDVHFSVGSVLLAIGV 184
                  5555555555555555555555555555555443 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.1e-05
    PF11139.3 168 llaylvapertqavlerlkdwlrshrrlilavllgvvGllllaqGl 213
                  +++ ++ ++ + + +++ kdw r+ +  i+av +g+++ +++ +Gl
  MMETSP0890-20130614|21894_1 213 VVSLWALAASLVPQMQKGKDWARQAHVAINAVTFGLFAYYQVPTGL 258
                  6788888999999***************************998887 PP

>> PF00033.14  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2   0.00058       2.6      42      65 ..     164     187 ..      85     219 .. 0.87
   2 ?    3.7   0.1    0.0066        30     130     162 ..     215     247 ..     206     251 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00058
   PF00033.14  42 gggalralHflaGllllallllrl 65 
                   +g++r++Hf++G++lla  + ++
  MMETSP0890-20130614|21894_1 164 REGNFRDVHFSVGSVLLAIGVPFA 187
                  5789*************9987665 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0066
   PF00033.14 130 lavealpplllddkglaelarelHfllayllll 162
                   ++    +l+ +++ ++++ar +H     ++ +
  MMETSP0890-20130614|21894_1 215 SLWALAASLVPQMQKGKDWARQAHVAINAVTFG 247
                  45666779999*************655544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.91
# Mc/sec: 713.64
//
Query:       MMETSP0890-20130614|21897_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.6   0.3       0.39   11.3   0.0    5.1  5  PF08238.7  Sel1 repeat
  ------ inclusion threshold ------
       0.72    9.8   3.9        2.5    8.0   0.2    3.5  3  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22   1.5e+03       3      29 ..      32      52 ..      30      52 .. 0.62
   2 !   11.3   0.0   5.7e-05      0.39       2      38 ..      65      98 ..      64      99 .. 0.76
   3 ?    1.9   0.0     0.051   3.5e+02      12      36 ..     103     128 ..     101     128 .. 0.71
   4 ?    1.3   0.0     0.077   5.3e+02      23      39 .]     172     188 ..     168     188 .. 0.83
   5 ?    3.3   0.0     0.019   1.3e+02       1      17 [.     189     203 ..     189     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.22
    PF08238.7  3 AqynLGlyymylnGlgGvpkdpekAle 29
                 A+ + G  +  +     + kd++kA+e
  MMETSP0890-20130614|21897_1 32 ACHAVG--E--FFA--VIRKDYVKARE 52
                 555555..4..333..37779999986 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.7e-05
    PF08238.7  2 eAqynLGlyymylnGl.gGvpkdpekAleWyekAAeqG 38
                  +++nLG+ +  l G+ gG+  d + A + + +A+++G
  MMETSP0890-20130614|21897_1 65 ASCFNLGRLL--LGGQgGGI--DEKGAARRFSQACDNG 98
                 689****555..55553578..7777**********99 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.051
    PF08238.7  12 mylnGl.gGvpk.dpekAleWyekAAe 36 
                  +++ Gl   +++ d++k+++ +e+A++
  MMETSP0890-20130614|21897_1 103 CHHLGLiA-IDAdDYRKGYRALERACS 128
                  55667632.5554699***99999985 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.077
    PF08238.7  23 dpekAleWyekAAeqGh 39 
                  d  +A   +e A++ Gh
  MMETSP0890-20130614|21897_1 172 DVPRAQACLEIACDEGH 188
                  6667999*******998 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.019
    PF08238.7   1 aeAqynLGlyymylnGl 17 
                  a+A+ nL+   ++++G+
  MMETSP0890-20130614|21897_1 189 APACHNLA--VLFKHGD 203
                  68******..8889*96 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.11   7.2e+02      15      24 ..      45      54 ..      43      56 .. 0.86
   2 ?   -1.8   0.0      0.54   3.7e+03       4      11 ..      67      74 ..      65      76 .. 0.76
   3 ?    8.0   0.2   0.00037       2.5       3      29 ..     102     128 ..     100     133 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.11
                 T-HHHHHHHH CS
   PF07719.12 15 gdyeeAleaf 24
                 +dy +A+e +
  MMETSP0890-20130614|21897_1 45 KDYVKARESY 54
                 79*****998 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.54
                 HHHHHHHH CS
   PF07719.12  4 lynlGlay 11
                 ++nlG+++
  MMETSP0890-20130614|21897_1 67 CFNLGRLL 74
                 78999887 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00037
                  HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAle 29 
                  a++ lGl+++ ++dy +  +a+e+A +
  MMETSP0890-20130614|21897_1 102 ACHHLGLIAIDADDYRKGYRALERACS 128
                  7999*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.86
# Mc/sec: 657.60
//
Query:       MMETSP0890-20130614|21912_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-32  111.2   1.0    4.1e-32  110.8   0.7    1.3  1  PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
    2.2e-24   85.3   0.3    4.1e-24   84.4   0.2    1.5  1  PF03987.10 Autophagocytosis associated protein, active-site domain


Domain annotation for each model (and alignments):
>> PF03986.8  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.7     6e-36   4.1e-32      28     131 ..       2     104 ..       1     145 [. 0.82

  Alignments for each domain:
  == domain 1    score: 110.8 bits;  conditional E-value: 6e-36
    PF03986.8  28 itpeEFvaAGDyLvykfptWsWaagdeskaksyLPkdKqfLvtrnvpcyrRakqveaeeeeeeiveeeeeddgwvkthkkekekekeeeeeedikeikdeeee..e 131
                  +tpeEF++AGD L++k+ptW+W++gd+ ++k+yLP++KqfL+t nvpc +Rak+ve++   ++ +  e e d+wv++++ +++++  +eeee+i  ++++ee+   
  MMETSP0890-20130614|21912_1   2 LTPEEFIQAGDELCQKCPTWQWSSGDPCNKKKYLPNNKQFLITNNVPCPERAKAVESS--VDASILAEIEGDEWVTATTIHDSTR-ADEEEEEIFGLSEKEEDpqL 104
                  8*******************************************************99..455555555689*****99999876.67777777777776666321 PP

>> PF03987.10  Autophagocytosis associated protein, active-site domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.2     6e-28   4.1e-24       1      62 []     150     212 ..     150     212 .. 0.96

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 6e-28
   PF03987.10   1 yItYdkyYqvPrLylrgydengkplspeeifedvssdyaqktvtleehPv.lgvpwysiHPCk 62 
                  +ItYdky q+Pr++l+gyde+ +pl+  ++fed++ dya +tvt e+hP+  g+p +siHPCk
  MMETSP0890-20130614|21912_1 150 SITYDKYWQTPRMWLFGYDEQARPLTQTQVFEDIVLDYARRTVTFESHPHlSGAPHASIHPCK 212
                  59************************************************66777*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|21936_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    9.2   6.4        1.4    9.2   4.5    1.0  1  PF10961.3 Protein of unknown function (DUF2763)


Domain annotation for each model (and alignments):
>> PF10961.3  Protein of unknown function (DUF2763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.5   0.00011       1.4      49      77 ..       7      35 ..       2      36 .] 0.63

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00011
    PF10961.3 49 rknssskkkiddgrGgpgapgGgrrlgri 77
                  k++ s k   +grGg g++ Gg r gr+
  MMETSP0890-20130614|21936_1  7 PKQKVSRKATAGGRGGRGGGRGGGRSGRG 35
                 46677777777777777766666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       145  (0.0106056); expected 273.4 (0.02)
Passed bias filter:                      108  (0.00789936); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.33s 00:00:00.61 Elapsed: 00:00:01.07
# Mc/sec: 80.63
//
Query:       MMETSP0890-20130614|21927_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-07   28.9  46.3    5.6e-07   28.9  32.1    2.7  3  PF04935.7 Surfeit locus protein 6


Domain annotation for each model (and alignments):
>> PF04935.7  Surfeit locus protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   5.0      0.44     6e+03      22      55 ..      63      96 ..      39     120 .. 0.48
   2 !   28.9  32.1   4.1e-11   5.6e-07       6     204 ..     123     312 ..     111     325 .. 0.71
   3 ?   -0.2   6.9     0.033   4.5e+02      10      42 ..     291     323 ..     284     342 .. 0.43

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.44
    PF04935.7 22 kkekrkeakkkekeqkeekeekkeeeeksskskk 55
                   + rkea+k+ k+ k + +++++ e ++++ ++
  MMETSP0890-20130614|21927_1 63 PAQTRKEASKRGKRLKYDLDAREKLESDEKNAQP 96
                 3334444444433333333333333222222221 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 4.1e-11
    PF04935.7   6 elleerrrkreerkerkkekrkeakkkekeqkeekeekkeeeeksskskkakkkeneekkivFskvefadgekakkklkekkkkkkkkgptdpkalLkkleakkkkleelkekdeakaaeleekekWkkalakaeGvK.vkDDekLLkkalkrkekqkkkskkeWkeRkekvekkkaerqkkReeNlkkRkdeKkkkkkk 204
                  + l++ r  r +++++k ++r+ +kk +k+++++k +++ + +     +++kk+e+ ++++    v +a+  + k++l + ++    ++ +  kal +++e+kk++l++l+++    + +  ++++W+ al+ a G++    D+  +kkalk++ek+k ksk  W++R +  + + +e +k R+   + Rk++ k++ k 
  MMETSP0890-20130614|21927_1 123 AKLAQVRGTRGQPDDSKIAERRAKKKGKKSSNDKKHKQEIKPP-----SAQKKVEKPTSTLQIPDVTVATVRAPKTQLIKARAP--GSKTKRLKALVEEAETKKATLADLRAQ---GKDDEAKRIEWNDALKIATGERrAPTDPAKIKKALKQREKKKVKSKIAWEKRLKDATPEANEEDKSRRAQRRDRKKKNKDRPKS 312
                  3333344444444444444444444444333333333333322.....268999999999********9998888777755444..444558*********************...6667778999**********972568***************************9999999999999987555555554444443 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.033
    PF04935.7  10 errrkreerkerkkekrkeakkkekeqkeekee 42 
                  e + +r++r++rkk+++++ k+ e+++ ++k++
  MMETSP0890-20130614|21927_1 291 EDKSRRAQRRDRKKKNKDRPKSGEDDESSKKRR 323
                  333333333333333333333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1308  (0.09567); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.93
# Mc/sec: 888.97
//
Query:       MMETSP0890-20130614|21977_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 755.52
//
Query:       MMETSP0890-20130614|21988_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-10   39.8   0.1      3e-10   39.7   0.1    1.1  1  PF13306.1 Leucine rich repeats (6 copies)
     0.0017   17.9   0.0      0.004   16.7   0.0    1.6  2  PF13855.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13306.1  Leucine rich repeats (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   4.4e-14     3e-10      25      77 ..       2      50 ..       1      52 [] 0.62

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 4.4e-14
    PF13306.1 25 sIgeyaFsncsslksitlpsslteigeyaFsncssltsitipssltsigenaF 77
                 +Ige+aF++c+sl ++tlp+s+t i + aF++cs+   +ti   +ts +e+aF
  MMETSP0890-20130614|21988_1  2 TIGERAFYECTSLIHLTLPDSITDICSDAFDGCSND--LTI--AITSTDEEAF 50
                 577777777777777777777777777777777433..333..3444455554 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.9e-07     0.004      15      49 ..       2      35 ..       1      36 [. 0.94
   2 ?   -1.3   0.0      0.25   1.7e+03      36      46 ..      41      51 ..      37      52 .] 0.63

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.9e-07
    PF13855.1 15 vipdgaFkglsnLkvLdLsgnnlksispeafkgLp 49
                 +i+++aF  +++L +L L  ++++ i ++af+g+ 
  MMETSP0890-20130614|21988_1  2 TIGERAFYECTSLIHLTLP-DSITDICSDAFDGCS 35
                 6999***************.*************97 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.25
    PF13855.1 36 nlksispeafk 46
                 +++s ++eaf+
  MMETSP0890-20130614|21988_1 41 AITSTDEEAFD 51
                 56777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 185.99
//
Query:       MMETSP0890-20130614|22011_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-35  121.1   6.1    6.8e-35  120.4   4.2    1.2  1  PF00295.12 Glycosyl hydrolases family 28
  ------ inclusion threshold ------
      0.032   12.9   0.0      0.067   11.8   0.0    1.5  1  PF02963.11 Restriction endonuclease EcoRI


Domain annotation for each model (and alignments):
>> PF00295.12  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   4.2     1e-38   6.8e-35      58     312 ..     170     434 ..     161     447 .. 0.86

  Alignments for each domain:
  == domain 1    score: 120.4 bits;  conditional E-value: 1e-38
                  --EEEE---.--B------S------..-------EEEEEEEEEEEEEE--EEE--SS--EEEE.EEEEEEEEEEEE-----------EE-S-E-EEEE-EEEESSS-S-EE----............-EEE----EE-----EE-EE-----.--EEEEEEEEEEEES-----EEEEETT----EEEEEEEEEEEE------EEEEEE----B---------EEEEEEE-...EE----T.--S-EEE-..----.EEEEEE--------.- CS
   PF00295.12  58 kitvlgasGggtiDGqgkaWwdesckkkksckkkpkflrfsklknstiknlsiknspnfhvsvedcknltasditidapagspNtDGidigsskgvtisnstiktgDDCiaigsgsk...........nisitnvtcggGhGiSiGsvggrsdentVsnvtvkdctvtgtdngvRiKtakgatgtvsnityenielknvanpividqdYedkkpcgkptsgvkisditfkn...itgtvas.aeavkllc..skgspcsgvtledvdltgG.k 312
                   +++++++Ggg +D++g+ W + + +   ++ + p++l +  ++  ti+nl i +     v+ + c+n+ + +  i +     NtDG+d+ ss ++ i+++ i+tgDDCiai++g+            n++++++++g GhG+SiGs++++ +   V++v+++d+ + gtd +vRiK+a g  g + nity+n     v ++i i + Ye + p ++ + + +  dit+++   i+  +++ +e  +l+c   + s  ++v + +v++ ++ +
  MMETSP0890-20130614|22011_1 170 TLENIVLEGGGLLDADGAGWYADDTD-DFDKTTRPMMLDLMWINGLTIQNLRIRRPGYWTVHPTFCNNVIVYNNSIITD--GSNTDGVDPDSSWNILIAQNYISTGDDCIAIKAGRDwsgrmvnistrNVLAQGNEFGLGHGVSIGSETSG-W---VQDVVIRDSILNGTDKAVRIKSARGRGGGARNITYSNSS-GAVDEAIEISLYYEGDIPPTNWSATPEFHDITVQDlaiINTKTDDdDESTYLECigLNDSAITNVLFANVKVASSnD 434
                  67899*******************98.799****************************************999999764..47*******************************************************************9.6...9************************************76.7899*********974443333355555555555533233333334578888884347788999*******999633 PP

>> PF02963.11  Restriction endonuclease EcoRI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.8e-06     0.067      57     110 ..     229     282 ..     220     308 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.8e-06
   PF02963.11  57 vdpdlgqtlfvenasikpdggivevkddygnwrvvlvaeakhqgkdiekirkgv 110
                  v p + + ++v n si+ dg  ++  d    w +++  +    g+d + i++g 
  MMETSP0890-20130614|22011_1 229 VHPTFCNNVIVYNNSIITDGSNTDGVDPDSSWNILIAQNYISTGDDCIAIKAGR 282
                  78999999****************************99*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.65
# Mc/sec: 1773.30
//
Query:       MMETSP0890-20130614|22026_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 227.65
//
Query:       MMETSP0890-20130614|22024_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-07   29.2   0.0      9e-07   28.4   0.0    1.3  1  PF05180.7  DNL zinc finger
      4e-05   23.1   0.4      0.045   13.3   0.1    2.9  2  PF11213.3  Protein of unknown function (DUF3006)
    0.00015   21.2   0.3       0.43   10.2   0.0    2.7  3  PF04014.13 Antidote-toxin recognition MazE
  ------ inclusion threshold ------
      0.043   13.6   0.0       0.63    9.8   0.0    2.6  2  PF01556.13 DnaJ C terminal domain
      0.048   13.1   0.6          8    6.0   0.1    2.5  2  PF01052.15 Surface presentation of antigens (SPOA)


Domain annotation for each model (and alignments):
>> PF05180.7  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.3e-10     9e-07      17      53 ..       5      41 ..       2      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3.3e-10
    PF05180.7 17 kiskqaYekGvVlvqCpgCknrHliaDnLglfkdeke 53
                 k+++ a+e+G+V+ +C gC+++Hl+aD+ gl+ ++++
  MMETSP0890-20130614|22024_1  5 KVNRIAWERGLVIGKCFGCDAKHLLADKTGLTDETNS 41
                 68999***************************99654 PP

>> PF11213.3  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.6e-05     0.045      15      43 ..     141     169 ..     139     198 .. 0.81
   2 !    6.9   0.0    0.0017       4.5      31      49 ..     199     219 ..     186     228 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
    PF11213.3  15 eveekekeldiprslLpagakeGDvLei..a 43 
                  e+++++  l+ p   Lp+g++ GDvL++  +
  MMETSP0890-20130614|22024_1 141 EIGTDP--LEAPTVVLPEGVRPGDVLNLklQ 169
                  555555..899999************99542 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
    PF11213.3  31 pagakeGDvLei..aegaeve 49 
                  p +++eGDvL++   +g++v+
  MMETSP0890-20130614|22024_1 199 PLNVTEGDVLTVrlPDGDSVS 219
                  779*********885555554 PP

>> PF04014.13  Antidote-toxin recognition MazE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.7   7.3e+03      30      42 ..      77      89 ..      74      92 .. 0.44
   2 !   10.2   0.0   0.00016      0.43      15      44 ..     152     181 ..     150     184 .. 0.82
   3 !    8.4   0.0   0.00056       1.5      14      38 ..     195     218 ..     194     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.7
   PF04014.13 30 evdgdg.eiilrpl 42
                 + dg   ++i +p+
  MMETSP0890-20130614|22024_1 77 SADG-NlSLIPKPG 89
                 4454.334444444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00016
   PF04014.13  15 vrfelgireGdevelevdgdgeiilrplks 44 
                  v+ + g+r+Gd + l +++d+ i +r  ++
  MMETSP0890-20130614|22024_1 152 VVLPEGVRPGDVLNLKLQDDRTIHVRVPQN 181
                  67788***************8777776665 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00056
   PF04014.13  14 evrfelgireGdevelevdgdgeii 38 
                  evr +l++ eGd + +++ +dg+++
  MMETSP0890-20130614|22024_1 195 EVRSPLNVTEGDVLTVRL-PDGDSV 218
                  9***************76.666655 PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00023      0.63      19      47 ..     164     192 ..     151     193 .. 0.89
   2 ?   -0.9   0.0       0.5   1.4e+03      16      41 ..     205     231 ..     198     235 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00023
   PF01556.13  19 vevptldgrkikvkippgtkpgeklrikg 47 
                  ++++  d+r+i+v++p++++pg +l+++g
  MMETSP0890-20130614|22024_1 164 LNLKLQDDRTIHVRVPQNSQPGAVLMVEG 192
                  56677799******************998 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.5
   PF01556.13  16 Ggtvevptldgrkikvk.ippgtkpge 41 
                  G  ++v  +dg +++v   ++  +pg 
  MMETSP0890-20130614|22024_1 205 GDVLTVRLPDGDSVSVLlRDAEAQPGA 231
                  667889999999988875666666665 PP

>> PF01052.15  Surface presentation of antigens (SPOA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0053        15      30      49 ..     159     178 ..     156     192 .. 0.87
   2 ?    6.0   0.1    0.0029         8      23      51 ..     196     224 ..     186     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0053
   PF01052.15  30 kpGdvlpLdkpaedpvelyv 49 
                  +pGdvl L  + ++++ ++v
  MMETSP0890-20130614|22024_1 159 RPGDVLNLKLQDDRTIHVRV 178
                  8**********999999998 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0029
   PF01052.15  23 lrellnLkpGdvlpLdkpaedpvelyvng 51 
                  +r  ln ++Gdvl++  p +d+v +   +
  MMETSP0890-20130614|22024_1 196 VRSPLNVTEGDVLTVRLPDGDSVSVLLRD 224
                  56668999***************998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 819.81
//
Query:       MMETSP0890-20130614|22049_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:01.12
# Mc/sec: 584.11
//
Query:       MMETSP0890-20130614|22065_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   56.2   1.7    2.9e-15   56.2   1.2    2.1  3  PF14240.1  YHYH protein
     0.0011   18.0  59.3     0.0018   17.4   9.2    5.3  5  PF04886.7  PT repeat
  ------ inclusion threshold ------
      0.046   13.1   0.0      0.073   12.5   0.0    1.2  1  PF04156.9  IncA protein
       0.11   11.8   0.7        0.2   11.0   0.5    1.4  1  PF02478.11 Pneumovirus phosphoprotein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   1.2   8.4e-19   2.9e-15       4     158 ..      75     244 ..      72     251 .. 0.72
   2 ?   -4.0   0.0       2.7   9.2e+03     150     165 ..     265     280 ..     259     280 .. 0.88
   3 ?   -1.7   0.0      0.51   1.7e+03       5      40 ..     476     513 ..     473     532 .. 0.71

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 8.4e-19
    PF14240.1   4 ftiplsptla....stptslsl..gavGvalnGvpidpaaae...........aanegedaatle.......glDecggHvqptg..aYHYHgapeclleeaee..dsesaliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt......gtYhYhvtdeypy 158
                  + ip+ p       ++ ++l+   ga+Gv   G  i++a+ +           + + ++     +       ++D c+ H+  +   +YH H  p cll++ ++  +++s+ iG+ +DGFp+Yg+ + +g + ++               ++ ++ +   D+c G +++         Y+Y++   y+ 
  MMETSP0890-20130614|22065_1  75 YVIPAYPMFIgtesTEYMALNEqgGAIGVLYDGAFIYSAYGGtrsgpldmsvdN-DYEN-----SapyvegnTFDFCNEHASSDTraSYHTHVPPSCLLQQLGQtdNDHSPRIGWSLDGFPVYGPRGPNGVMMMQ-------------CTESNADPNFCVDKCGGFYDDGtivgdgFVYRYYIMGYYNE 244
                  5566666332211144455555679****************9888877766632.2233.....133444569*****9998765559*************55545999**********************9222.............33344455667888888888877888878888888766655 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2.7
    PF14240.1 150 YhvtdeypyiirclkG 165
                  Y v + yp+++ cl+G
  MMETSP0890-20130614|22065_1 265 YSVAQFYPFTPLCLRG 280
                  8889999******998 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.51
    PF14240.1   5 tiplsptlastptslsl..gavGvalnGvpidpaaaea 40 
                  ++p++ +++ +pts+s+   + ++ l G+  ++ +  +
  MMETSP0890-20130614|22065_1 476 QVPTTQEPTCNPTSISKstISGSIILDGISTNDITRTT 513
                  78999999999999999433345888999888887754 PP

>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   3.8   0.00076       2.6       7      27 ..     373     393 ..     371     393 .. 0.36
   2 !   17.4   9.2   5.3e-07    0.0018       2      36 .]     384     418 ..     383     418 .. 0.94
   3 !    8.7   7.6   0.00027      0.91       1      30 [.     432     460 ..     430     463 .. 0.87
   4 !    6.8   4.7    0.0011       3.8       1      27 [.     465     488 ..     465     492 .. 0.80
   5 ?   -0.6   0.1      0.23   7.7e+02      11      19 ..     604     612 ..     604     618 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00076
    PF04886.7   7 teqPTvqPTgqPtaqPTdqPt 27 
                  t++PT  PT  Pt  P++ Pt
  MMETSP0890-20130614|22065_1 373 TNGPTPKPTYKPTLIPSSMPT 393
                  333333333333333333333 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 5.3e-07
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                  pT  P++ PT  PT  Pt +P+++Pt q+t+ Pt+
  MMETSP0890-20130614|22065_1 384 PTLIPSSMPTLTPTRKPTLEPSQKPTRQSTSVPTP 418
                  7888*****************************96 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00027
    PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPtaqP 30 
                  +pT  Pt+ PT  PT q  a+PT +P ++P
  MMETSP0890-20130614|22065_1 432 EPTQKPTSIPTSTPTRQ-RAEPTLAPASEP 460
                  69999999999999999.999999998888 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0011
    PF04886.7   1 qpTaqPteqPTvqPTgqPtaqPTdqPt 27 
                  + T++P+  PT+ PT q   +PT  Pt
  MMETSP0890-20130614|22065_1 465 EATSNPSLVPTQVPTTQ---EPTCNPT 488
                  579***********988...5555555 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 0.23
    PF04886.7  11 TvqPTgqPt 19 
                  T +PT +P 
  MMETSP0890-20130614|22065_1 604 TSEPTFAPA 612
                  334444443 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.073      37      88 ..     630     684 ..     626     688 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
    PF04156.9  37 isallgivliAlgvvLlalgllllllkapvqseedekiee....srlqeelseses 88 
                  ++++++ ++iA +++++a+ +l+++ +++ + +++e+ie+     rlq+e +e+++
  MMETSP0890-20130614|22065_1 630 MFVAIIFCVIA-ALLCIAGSFLFCCWYRRAHIKNKEPIENnsvpKRLQQEDIEQDQ 684
                  56778888887.79*****************************9999999999876 PP

>> PF02478.11  Pneumovirus phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   5.9e-05       0.2      30     185 ..     410     568 ..     393     572 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.9e-05
   PF02478.11  30 krlqsivgekvntvkeklelPtlskaakltklsepklawsekdskkkeekkkvskvkdieeik.ekkv.tstsdakteaekskdtsekk.kkkVsFkedeegkytkLek....ealellsdnedndeeeSvltfeEkdtssssieaRLerieEKLSmilGlLk 185
                  +++ s++  k++ + ++++l  +++++   k++  +++ + ++ ++ +  +  + v+die +  ++ v t+ +++++++++ +  s+++    +  +   ++  t+  +     a+ +++d +d     S l +  +  s  sie  +e+ e+++S i+  L+
  MMETSP0890-20130614|22065_1 410 RQSTSVPTPKLTPIPSTFDL--VAEPT--QKPTSIPTSTPTRQRAEPTLAPASEPVTDIEATSnPSLVpTQVPTTQEPTCNPTSISKSTiSGSIILDGISTNDITRTTEytivGAIATIADVDDSSVSISFLNYRRHLLSGISIEYFIEASEDRISTIISKLE 568
                  33466777777777777773..33333..22222222222222222233344455668876651444414445666666666666666676666666666676666655111256788988888888888888888888*******************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:01.37
# Mc/sec: 1241.91
//
Query:       MMETSP0890-20130614|22098_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-45  153.1   0.1      8e-45  152.3   0.0    1.2  1  PF02779.19 Transketolase, pyrimidine binding domain
    3.5e-38  130.2   0.0    6.3e-38  129.3   0.0    1.4  1  PF02780.15 Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0   1.2e-48     8e-45       3     175 ..      23     196 ..      22     198 .. 0.98

  Alignments for each domain:
  == domain 1    score: 152.3 bits;  conditional E-value: 1.2e-48
                  EEHHHHHHHHHHHHHCC-TTEEEEESS-H..HHHTTHHHHHHEGG--EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG....HHGGHHHHHHHHHHTT---EEEEEEE--------TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEE CS
   PF02779.19   3 iawrkaeaealaellkedpevvllgaDva..rgtfsvrkgllhdqgegrvidsgisEqamlgfavGaalagpllviweaqfgdFangA..qiyadqairsgeakgklpvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkqll 175
                  +++r+a+++a++e++++d++v++lg++va  +g ++v+kgl +++ge rv+d++i+E +++g a+Gaa+++ l++++e++ ++Fa++A  qi++++a+  +++ g+++v++v+r p g+ +  ++++s+   +++  +pglkv+ P +++++kgll++ai+  d++Pvv ++++ l+
  MMETSP0890-20130614|22098_1  23 VSIREALNMAMDEEMERDENVFILGEEVAqyQGAYKVTKGLFQKYGERRVMDTPITEMGFAGLAIGAAYKD-LRPVCEFMTFNFAMQAidQIVNSAAKQAYMSNGDMSVPIVFRGPNGAAAGTAAQHSQCFASWFSQCPGLKVITPWNAEDAKGLLKAAIR--DPNPVVCLENELLY 196
                  689********************************************************************.8****************************************************************************************..899****9999888 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   9.2e-42   6.3e-38       1     120 [.     216     337 ..     216     341 .. 0.97

  Alignments for each domain:
  == domain 1    score: 129.3 bits;  conditional E-value: 9.2e-42
                  TEEEEEETTECEEEEEESTHHHHHHHHHHHHHTT.T-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHH.HSGGG-SSEEEEEEEESSSHHSSHHHHHHHS--H CS
   PF02780.15   1 gkaevdregkdvtivayGsmveealeAaeeLake.gisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalae.egftkldapvrrvggpdvpiphapalelaylglt 120
                  g+a ++r+g+d+t+v++++ v  ++eAa  L++  gisa+v++lr+++PlD+++i ++vkkt+rlv+vee+++++Gigae++a+++e ++f++ldapv+rv+g+d+p+p++  le+a+l++ 
  MMETSP0890-20130614|22098_1 216 GQAHIERDGTDLTLVSFSKCVGYCMEAAVRLQEShGISAQVLNLRSLRPLDKDAIFDAVKKTNRLVTVEEGWPQCGIGAEIIALIMEsDAFDYLDAPVQRVTGVDIPMPYSTLLEKAALPQV 337
                  7999****************************999**********************************************************************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 1171.55
//
Query:       MMETSP0890-20130614|22120_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-10   40.1   0.5    2.6e-10   39.5   0.3    1.3  1  PF02213.11 GYF domain
     0.0006   19.2   0.1      0.001   18.5   0.1    1.3  1  PF14237.1  Domain of unknown function (DUF4339)


Domain annotation for each model (and alignments):
>> PF02213.11  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.3   3.9e-14   2.6e-10       2      40 ..      59      97 ..      58     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 3.9e-14
                 -EEEE-----EE-EE-HHHHHHHHTTTSS-S--EEEE-- CS
   PF02213.11  2 qWeYkdpqgkiqGPFsseeMqsWykegYFqpslqvrrve 40
                  W+Y+d  +k qGPF   +M++W ++gY++ ++ +    
  MMETSP0890-20130614|22120_1 59 LWFYRDNEDKRQGPFWPGQMRQWLEAGYLPKNMLIAPSF 97
                 7*******************************9997764 PP

>> PF14237.1  Domain of unknown function (DUF4339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.5e-07     0.001       2      34 ..      60      93 ..      59      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
    PF14237.1  2 wyyarn.gqqaGPfsleeLrqliasgqitpdtlv 34
                 w+y +n ++++GPf   ++rq++++g + ++ l+
  MMETSP0890-20130614|22120_1 60 WFYRDNeDKRQGPFWPGQMRQWLEAGYLPKNMLI 93
                 9999962689****************99888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.83
# Mc/sec: 464.84
//
Query:       MMETSP0890-20130614|22119_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00039   20.1  11.0     0.0013   18.4   5.3    2.8  2  PF01485.16 IBR domain
  ------ inclusion threshold ------
       0.17   11.7   0.2       0.17   11.7   0.1    1.7  2  PF00674.13 DUP family


Domain annotation for each model (and alignments):
>> PF01485.16  IBR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   5.3   1.9e-07    0.0013      20      64 .]      32     183 ..      14     183 .. 0.70
   2 ?    0.4   0.0     0.078   5.3e+02      41      48 ..     205     212 ..     185     214 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.9e-07
   PF01485.16  20 wCprpdCeaiiekekgakks...........................................................................................................svtCskCgfefCflCkkewHeglsC 64 
                   C + dC + + +e+ ++ +                                                                                                            vtC+ C+++ C++Ck++ H  l+C
  MMETSP0890-20130614|22119_1  32 FCCHTDCARLFAVEELEDLRqgtgsksrfsssqlellldappgryrflgvstglhreesavastlqeekdendhedspldvvvleqsdddftndedspylptslrdneeskestasvsstspdaqapFVTCPFCSRSSCIRCKSPSHTLLTC 183
                  55566777666666666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777788888888888889********************9999 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.078
   PF01485.16  41 vtCskCgf 48 
                    C+kC+f
  MMETSP0890-20130614|22119_1 205 RPCPKCKF 212
                  44666665 PP

>> PF00674.13  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.5e-05      0.17      69      96 ..      16      43 ..      14      49 .. 0.92
   2 ?   -2.0   0.2      0.44     3e+03       9      28 ..     224     243 ..     212     255 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.5e-05
   PF00674.13 69 mNqYLfekklwnteyfFydgedCeefFk 96
                 + ++++e k+  ++ fF + +dC + F 
  MMETSP0890-20130614|22119_1 16 LQRFMYEAKIPVEQRFFCCHTDCARLFA 43
                 5689*********************995 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.44
   PF00674.13   9 vfsvlllllllvllllllvl 28 
                  +f + ++++++ l++++lv+
  MMETSP0890-20130614|22119_1 224 IFGLEVAVRIVELISVTLVS 243
                  33333344443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       818  (0.0598303); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.77
# Mc/sec: 818.50
//
Query:       MMETSP0890-20130614|22133_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 411.87
//
Query:       MMETSP0890-20130614|22141_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-12   46.0   0.1    2.6e-06   26.9   0.0    2.3  2  PF00627.26 UBA/TS-N domain
  ------ inclusion threshold ------
      0.037   14.1   0.0       0.96    9.5   0.0    2.8  3  PF08587.6  Ubiquitin associated domain (UBA)
      0.041   13.3   0.2        2.1    7.8   0.0    2.3  2  PF02845.11 CUE domain


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.7e-07     0.003      11      35 ..       5      29 ..       4      31 .. 0.91
   2 !   26.9   0.0   5.7e-10   2.6e-06      10      36 ..     104     130 ..      95     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.7e-07
                 H----HHHHHHHHHHTTTSHHHHHH CS
   PF00627.26 11 eMGfsreeakkALratnnnvErAve 35
                  MGf+  +  +AL+a+ n+ +rA  
  MMETSP0890-20130614|22141_1  5 SMGFPIADIERALKAAHNDCDRALT 29
                 6******************999976 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 5.7e-10
                  HH----HHHHHHHHHHTTTSHHHHHHH CS
   PF00627.26  10 reMGfsreeakkALratnnnvErAvey 36 
                  ++MGfs ++a  AL+++nn+v++A   
  MMETSP0890-20130614|22141_1 104 LDMGFSVQDAESALEKSNNDVNAALSL 130
                  79**********************865 PP

>> PF08587.6  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.071   3.2e+02      12      26 ..       5      19 ..       4      57 .. 0.79
   2 ?   -1.6   0.0      0.65   2.9e+03      28      39 ..      88      98 ..      64     100 .. 0.61
   3 ?    9.5   0.0   0.00021      0.96      13      29 ..     106     122 ..      96     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.071
    PF08587.6 12 TMGYdkDeivealek 26
                  MG+   +i+ al+ 
  MMETSP0890-20130614|22141_1  5 SMGFPIADIERALKA 19
                 599999999999876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.65
    PF08587.6 28 eqskslneikDA 39
                 eq     +++DA
  MMETSP0890-20130614|22141_1 88 EQ-NNPAAVLDA 98
                 33.233566666 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00021
    PF08587.6  13 MGYdkDeivealekdeq 29 
                  MG++  + ++alek+++
  MMETSP0890-20130614|22141_1 106 MGFSVQDAESALEKSNN 122
                  **************998 PP

>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0086        39      15      39 ..       8      32 ..       7      35 .. 0.80
   2 ?    7.8   0.0   0.00047       2.1      17      40 ..     110     133 ..     107     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0086
                 S-HHHHHHHHHHSTTTHHHHHHHHH CS
   PF02845.11 15 ldeevIravLrasngnvEaainaLL 39
                 ++  +I+++L a +++ ++a   LL
  MMETSP0890-20130614|22141_1  8 FPIADIERALKAAHNDCDRALTLLL 32
                 56789**********9888766555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00047
                  HHHHHHHHHHSTTTHHHHHHHHHH CS
   PF02845.11  17 eevIravLrasngnvEaainaLLe 40 
                  + + +++L+ sn++v+aa + LL+
  MMETSP0890-20130614|22141_1 110 VQDAESALEKSNNDVNAALSLLLS 133
                  567899***********9888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.68
# Mc/sec: 482.80
//
Query:       MMETSP0890-20130614|22151_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-29  101.8   0.3    5.2e-29  101.2   0.2    1.3  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
        0.2   11.3   0.8       0.57    9.9   0.2    1.9  2  PF09355.5  Phage protein Gp19/Gp15/Gp42


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.2   7.6e-33   5.2e-29       2     156 ..     145     303 ..     144     305 .. 0.90

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 7.6e-33
                  EEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHH.HCC..CCEEEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHH......HCTTTSEEEEEE-TTHHH CS
   PF00300.17   2 lylvRHGeselnkegrlqgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaei.lle..eldipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelie......akdkgenvlivsHggvlr 156
                  ++l+RHGe+e n+++++qg+++  Lt  G +qa  lg++L+r++  idav +S+l+R++qTa++ +++  + + p+  + +Lrer++g++eg++++  + + p+        + +fr p ges++dvyeR++ +l+++         +++  ++l+++Hgg++ 
  MMETSP0890-20130614|22151_1 145 IWLIRHGETEANARRITQGQQPGRLTRLGAQQAACLGARLEREQSVIDAVLSSDLLRCRQTAHLaIRDwfGTEKPFFLDIDLRERSVGTYEGQHHSSPRTRRPQGIS-----PRQFRAPSGESWQDVYERATFLLQRVATtlldpqSEREVSRILVFTHGGFIA 303
                  9*********************99****************************************999866666999999****************999999883333.....3557999******************999***77667777777*******996 PP

>> PF09355.5  Phage protein Gp19/Gp15/Gp42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   8.3e-05      0.57      47      96 ..       9      58 ..       4      66 .. 0.91
   2 ?   -2.0   0.0      0.41   2.8e+03      27      58 ..     107     142 ..      94     156 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.3e-05
    PF09355.5 47 ksvsvvdvvaravltstdepkasvsetagnysyslsyrldgGgleikdse 96
                 ++v+v+++ ++ +  st   ++s + + g ys   + r + Ggl i +  
  MMETSP0890-20130614|22151_1  9 EEVNVRELKSKSLFSSTTTSNSSPGRSIGTYSNVKTRRSGNGGLSIRERV 58
                 67899*****************************************9875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.41
    PF09355.5  27 eiekvGrdldakvasdrdylksv.....svvdvvara 58 
                  ei  + r++ + v   + y++sv     +++++va+ 
  MMETSP0890-20130614|22151_1 107 EIF-QTRSPRNLVNRAPKYEISVttqnnTLKHLVAKK 142
                  554.456777777777777777755553335555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.80
# Mc/sec: 1246.11
//
Query:       MMETSP0890-20130614|22159_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1538  (0.112493); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.77
# Mc/sec: 1297.77
//
Query:       MMETSP0890-20130614|22171_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-09   35.1   0.0      1e-08   34.2   0.0    1.5  1  PF00018.23 SH3 domain
    0.00096   19.1   0.0     0.0054   16.7   0.0    2.2  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0059   15.9   0.0      0.015   14.6   0.0    1.6  1  PF07653.12 Variant SH3 domain
     0.0084   15.8   0.1      0.025   14.3   0.1    1.9  1  PF00627.26 UBA/TS-N domain
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.25   11.1   0.0    1.5  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   3.8e-12     1e-08       1      48 []     745     793 ..     745     793 .. 0.98

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 3.8e-12
                  EESS-BE-SSTTS-EB-TT-EEEEEEESSSSEEEEEETTT.TB---EEG CS
   PF00018.23   1 iAlYDYearesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliPs 48 
                  iAlY Ye+ e+  L ++ GD++ +++k +dgW ++ l ++   +Gl+Ps
  MMETSP0890-20130614|22171_1 745 IALYSYEPAEDWQLKLNAGDKLSLINKMDDGWSEVSLLDNpDMRGLVPS 793
                  7***********************************************8 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     2e-06    0.0054      23      70 ..     443     498 ..     411     509 .. 0.68
   2 ?   -1.1   0.0      0.73     2e+03      43      55 ..     760     772 ..     751     777 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2e-06
                  S.......SSSEEEEESTTT..HHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHH CS
   PF00595.19  23 r.......dkgifvsevvpg..gaaeagglkeGDkIlsvNgvdvenvshdeavqaik 70 
                          ++ + + +++    ga ++g lk+GD +++vNg +v  ++      +++
  MMETSP0890-20130614|22171_1 443 LemeagpvENKVLIRKILSKssGAGAVG-LKVGDELVAVNGAHVPPLAAGAMRRMLE 498
                  0555555667899999999975666666.************9998766655555555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.73
                  BSTTCEEEEETTE CS
   PF00595.19  43 lkeGDkIlsvNgv 55 
                  l++GDk+  +N  
  MMETSP0890-20130614|22171_1 760 LNAGDKLSLINKM 772
                  99*****999975 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.6e-06     0.015       7      52 ..     749     796 ..     729     798 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.6e-06
                  -B--SS-----B----EEEEE.E-S----BEEEE..-.TT---B--HHH CS
   PF07653.12   7 dyvaedpeeLslkkGDvikvlgskesdgwweges..g.GrvGlfPsslV 52 
                  +y+++    L l +GD++ ++ +k +dgw e++   +   +Gl+Pss++
  MMETSP0890-20130614|22171_1 749 SYEPAEDWQLKLNAGDKLSLI-NKMDDGWSEVSLldNpDMRGLVPSSYL 796
                  566655556************.**********998536899******98 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   9.1e-06     0.025       7      36 ..     111     139 ..     106     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-06
                  HHHHH----HHHHHHHHHHTTTSHHHHHHH CS
   PF00627.26   7 qqLreMGfsreeakkALratnnnvErAvey 36 
                  ++L eMGf+++ akkA      ++++A+e+
  MMETSP0890-20130614|22171_1 111 AKLIEMGFDKDLAKKAAGMFS-DLDQAAEW 139
                  78**************75555.99999998 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.2e-05      0.25      11      46 ..     451     485 ..     423     496 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.2e-05
    PF13180.1  11 entrgvlvvs.VkessPaakaglkpGDiilkvdgkkv 46 
                  en  +vl+ +   +ss a   glk+GD++++v+g  v
  MMETSP0890-20130614|22171_1 451 EN--KVLIRKiLSKSSGAGAVGLKVGDELVAVNGAHV 485
                  44..888888444555666667************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.25u 0.42s 00:00:01.67 Elapsed: 00:00:01.26
# Mc/sec: 1531.01
//
Query:       MMETSP0890-20130614|22172_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-42  144.8   0.0    5.4e-42  143.0   0.0    1.9  2  PF00270.24 DEAD/DEAH box helicase
    5.1e-19   67.8   0.1    1.8e-18   66.0   0.1    2.0  1  PF00271.26 Helicase conserved C-terminal domain
    1.4e-16   60.1   0.0    3.1e-16   59.0   0.0    1.6  1  PF08152.7  GUCT (NUC152) domain
    0.00042   20.0   0.4     0.0023   17.6   0.0    2.4  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.46    8.6   8.9       0.64    8.1   6.2    1.2  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.0     2e-45   5.4e-42       2     170 ..     106     276 ..     105     279 .. 0.93
   2 ?   -1.9   0.0      0.65   1.8e+03      77     106 ..     360     392 ..     338     403 .. 0.70

  Alignments for each domain:
  == domain 1    score: 143.0 bits;  conditional E-value: 2e-45
                  HHHHHHHHHHH.SS-EEEEEC-TT---HHHHHHHHHHHHHH..H...TTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHH CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   2 piQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqilletlk...kttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdv 170
                  piQ +++++i+ + +dvl+ a+TG+GKTlaf++p+++ l+++ k   + +  +ali+aPtreLa q++n+++ +++  +l +++++gg++    q   l++gvdivvgTpgr +dl+ ++ l+l  + + +lDEad++ls+gf+d+l+ i +++   +++q++++SAT+p+ v
  MMETSP0890-20130614|22172_1 106 PIQVATWRAIYeERRDVLGRAKTGTGKTLAFALPMIELLIKNPKqayRGSPPRALILAPTRELAMQVFNDCEIVAAG-RLTCVCVYGGSPYG-PQCDSLRRGVDIVVGTPGRTKDLLDKQVLSLNMLDFAILDEADEMLSMGFKDELDYIFEAMGTNEQRQLLLFSATVPSWV 276
                  8**********779**************************998866644556*******************999987.8***********88.999999999****************98889999*****************************9*************9765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.65
                  .EEEEETTSSBHHHHHHHHH....T..-SEEEEE CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
   PF00270.24  77 lrvlliiggvalardqlsvl....dngvdivvgT 106
                   +  +++g+va++ d+++ +    +++ +++v+T
  MMETSP0890-20130614|22172_1 360 YERRALHGDVAQK-DREKTInafkQGKFKLLVAT 392
                  4455678999855.66656567888888888888 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   6.6e-22   1.8e-18      11      78 .]     363     435 ..     355     435 .. 0.94

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 6.6e-22
                  EEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHH......HHHH------TT CS
   PF00271.26  11 ailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts......yiQriGRtgRag 78 
                   +lhg+  q++re++++ f++gk+k lvat+va+rG+d+  v++Vi+  +p+s+++      y++r GRtgRag
  MMETSP0890-20130614|22172_1 363 RALHGDVAQKDREKTINAFKQGKFKLLVATDVAARGLDM-IVDLVIMNKPPTSRSGradtetYVHRSGRTGRAG 435
                  579************************************.**********999999999999**********97 PP

>> PF08152.7  GUCT (NUC152) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.1e-19   3.1e-16       2      76 ..     526     602 ..     525     619 .. 0.91

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.1e-19
    PF08152.7   2 yte.ikqRSLltseegyvTllLeas.keistlsyvwkvlkrfLseeaveeikgltlladekGavFDvpeeeaeella 76 
                  +   + +RSLl+  egyvT  ++    ei++lsyvw+ l+r+ + +++e+i+g+tl ad   avFDvpe+++  +  
  MMETSP0890-20130614|22172_1 526 FDTaPPSRSLLSNSEGYVTCKFDNPnAEINSLSYVWTALRRSVDPNICEQIRGMTLAADRLSAVFDVPEAQLSAFST 602
                  5555889***************99868*******************************************9988865 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6       1.4   3.8e+03      87      98 ..      14      25 ..       3      46 .. 0.40
   2 !   17.6   0.0   8.3e-07    0.0023      24      70 ..     118     176 ..      92     274 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.4
   PF04851.10 87 vakkdklfgeeq 98
                 ++kk+++ ++++
  MMETSP0890-20130614|22172_1 14 KRKKEEKRKKKK 25
                 111111111111 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 8.3e-07
   PF04851.10  24 ekkrglivmaTGtGKTlvaas.liarlar...........kflflvprkelleqaleef 70 
                  e++ +l  + TGtGKTl  a  +i+ l++           ++l+l+p++el  q  ++ 
  MMETSP0890-20130614|22172_1 118 ERRDVLGRAKTGTGKTLAFALpMIELLIKnpkqayrgsppRALILAPTRELAMQVFNDC 176
                  4677788899*******9996244444448888899******************99987 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.2   0.00023      0.64     233     363 ..       3      40 ..       1      83 [. 0.57

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00023
                  XXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX CS
    PF05793.7 233 dededeekkkkKkkkkaknkkkldDdkkkkrggdddadeydsddGddegrEedyisDdsasendpeeredklseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSddeedsd 363
                  +++e+                                                                                             e k  kk+kk++k kkkk++ d+++ ++e ++ 
  MMETSP0890-20130614|22172_1   3 GDEEE---------------------------------------------------------------------------------------------EAKQIKKRKKEEKRKKKKRDDDEDEVKSEAEDK 40 
                  44444.............................................................................................444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1147  (0.0838941); expected 273.4 (0.02)
Passed bias filter:                      652  (0.0476887); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.28u 0.43s 00:00:01.71 Elapsed: 00:00:01.00
# Mc/sec: 1540.86
//
Query:       MMETSP0890-20130614|22192_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.77
# Mc/sec: 740.69
//
Query:       MMETSP0890-20130614|22196_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-68  227.3   0.0    7.5e-68  227.0   0.0    1.1  1  PF03152.9 Ubiquitin fusion degradation protein UFD1


Domain annotation for each model (and alignments):
>> PF03152.9  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.0   0.0   5.5e-72   7.5e-68       2     176 .]      24     194 ..      23     194 .. 0.98

  Alignments for each domain:
  == domain 1    score: 227.0 bits;  conditional E-value: 5.5e-72
    PF03152.9   2 feqkyrcypvsflakeekeeiesGgkiilPpsaLdeLskleieypmlFelsneaakkvthcgVLEFiaeeGtiylpewmmenlgleegdlvevesvslpkgkfvklqpqskdfldisnpkavLetaLrnfstLtkgdvieieyndkkyelkivevkpanaisiietdlevdfaep 176
                  f+++y+c++ +f+   +k+++e+G+ki+lP+sa+++L++l++eypmlFe++++ +  +thcgV+EF+a eG++++p w+m+nl +eeg l++v++vslpk++fvk++pqs+dfldisnp+avLe++Lr fs++t+gd i + yndk y+l++ evkpa+a +iietd++vdf++p
  MMETSP0890-20130614|22196_1  24 FDEQYHCFSGAFS---DKPQLEEGDKILLPSSAFEQLARLQVEYPMLFEIRSS-KGGRTHCGVMEFTAPEGQCIMPFWIMQNLLCEEGALISVKNVSLPKASFVKFKPQSVDFLDISNPRAVLERQLRTFSCVTVGDQICLPYNDKRYYLEVQEVKPADAACIIETDCNVDFDAP 194
                  899**********...***********************************98.67889*****************************************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.79
# Mc/sec: 994.94
//
Query:       MMETSP0890-20130614|22201_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-11   43.6   0.0    2.9e-11   43.1   0.0    1.1  1  PF13489.1  Methyltransferase domain
    1.2e-09   38.4   0.0    2.2e-09   37.5   0.0    1.4  1  PF08242.7  Methyltransferase domain
    2.6e-07   30.9   0.1    6.7e-07   29.6   0.0    1.7  2  PF08241.7  Methyltransferase domain
    3.7e-07   29.7   0.0    5.8e-07   29.1   0.0    1.4  1  PF13847.1  Methyltransferase domain
    1.6e-05   25.3   0.0    2.3e-05   24.8   0.0    1.3  1  PF12847.2  Methyltransferase domain
    4.1e-05   22.6   0.0    6.3e-05   22.0   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0061   15.1   0.0     0.0084   14.7   0.0    1.1  1  PF05958.6  tRNA (Uracil-5-)-methyltransferase
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.039   14.1   0.0    1.6  2  PF13649.1  Methyltransferase domain
      0.026   13.5   0.0      0.036   13.1   0.0    1.2  1  PF03848.9  Tellurite resistance protein TehB
      0.084   12.1   0.0       0.15   11.3   0.0    1.4  1  PF05175.9  Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   2.1e-14   2.9e-11      21     161 ..      59     215 ..      45     216 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 2.1e-14
    PF13489.1  21 kpggrvLDiGcGtGillellaengfdvtgvDpspaaigkakqaqksqfdeed...............aaepagkfdlivarevlehvpdpeellrqiael.lkpg.Gylllstpnas.lasdea.fakwdylvprgthisffsaeslkelleeaGfeive 161
                   ++g+vL++++GtG +l+++ ++ ++vt+ D s+ + +ka ++ +++  ++                 +e++++fd++v ++ l++v dp  +lr+++++ + p    +ll ++ +s +++++  ++k   +  +    + ++ +++ +++++aG+ i++
  MMETSP0890-20130614|22201_1  59 SAKGNVLELAAGTGSNLSYY-PSDCQVTATDASRSMLQKAATKINDTKKKNVlllrvavediprlllHTENNKRFDTVVDTFGLCSVEDPILALRTAQAAcVHPTsSRILLLEHGRSyFSWINHhLDKYAAKHLQ-KWGCSWN-RDILQIVKDAGLIIES 215
                  5789************9977.7889***********9995555555553333444444444444555555899*************************9725675599*****9997344555535554445554.6668888.9999999999999876 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.6e-12   2.2e-09       1      91 [.      65     156 ..      65     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.6e-12
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg....ssfDvvvasnvlhhlkdirevldnirk 91 
                  Le+ +GtGs+l++   +   +++t++D s+s++++a+ k+++ +++n+  +++ ++d+  l       + fD+vv  + l  ++d+  +l+ + +
  MMETSP0890-20130614|22201_1  65 LELAAGTGSNLSYYPSD---CQVTATDASRSMLQKAATKINDTKKKNVLLLRVAVEDIPRLLLHtennKRFDTVVDTFGLCSVEDPILALRTAQA 156
                  89************665...*************************************99998889************999999**9999998765 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.6   9.1e+03      47      63 ..      22      38 ..       8      40 .. 0.59
   2 !   29.6   0.0   4.9e-10   6.7e-07       1      83 [.      65     154 ..      65     158 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.6
    PF08241.7 47 vvadaeelpfednsfDv 63
                   a +++++++++++D 
  MMETSP0890-20130614|22201_1 22 CAARIQTFDLASKTYDT 38
                 33447777788888775 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 4.9e-10
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle......lvvadaeel..pfe.dnsfDvvvssevlehledpekalkei 83 
                  L++ +Gtg++l+++ +   ++vt++D s +ml++a +++++ + +      + v+d+ +l  + e ++ fD vv ++ l+ +edp  al+ +
  MMETSP0890-20130614|22201_1  65 LELAAGTGSNLSYYPSD--CQVTATDASRSMLQKAATKINDTKKKnvlllrVAVEDIPRLllHTEnNKRFDTVVDTFGLCSVEDPILALRTA 154
                  7899***********99..********************9999999**999888888888554452559****************9999865 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   4.2e-10   5.8e-07       4      98 ..      61     156 ..      58     223 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 4.2e-10
    PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieelekl.le....esfDlvisnevlnaladpqkvlkeier 98 
                  + +vl+l++GtG    +l+    ++++v+  D s  ++++A ++  + + +nv   +  +e++++l l     ++fD v++   l+ + dp  +l+ ++ 
  MMETSP0890-20130614|22201_1  61 KGNVLELAAGTG---SNLS-YYPSDCQVTATDASRSMLQKAATKINDTKKKNVLLLRVAVEDIPRLlLHtennKRFDTVVDTFGLCSVEDPILALRTAQA 156
                  5689*******6...5666.6678*********************************999999999999999**********999******999995543 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.7e-08   2.3e-05       3      87 ..      62     143 ..      60     181 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.7e-08
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellq...gda...keelsllerfDavllkg.ltldallal 87 
                  +++l+l++GtGs  l       +++v++ D+s+ +l+ a  ++ +  +  ++ ll+    d+     + ++  rfD v++   l+      +
  MMETSP0890-20130614|22201_1  62 GNVLELAAGTGSN-LSYYP--SDCQVTATDASRSMLQKAATKI-NDTKKKNVLLLRvavEDIprlLLHTENNKRFDTVVDTFgLC------S 143
                  67***********.66666..6*********************.444556666555344677655566666666****9988442......2 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.6e-08   6.3e-05      50     176 ..      63     193 ..      55     202 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.6e-08
   PF01209.13  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLp......feddsfDvvtvsfGlrnvtDklkaLkeayr..vlkpGGrlvvlefskvelpllsqayelyskevlPv 176
                  +vl++a+Gtg     l +   +  +v+  D + +mL+ +  k++++ k+n+ +l    e++p      ++++ fD+v  +fGl  v D   aL++a    v     r++ le  +     +++  + y+ + l +
  MMETSP0890-20130614|22201_1  63 NVLELAAGTGSN---L-SYYPSDCQVTATDASRSMLQKAATKINDTKKKNVLLLRVAVEDIPrlllhtENNKRFDTVVDTFGLCSVEDPILALRTAQAacVHPTSSRILLLEHGRSYFSWINHHLDKYAAKHLQK 193
                  678888888753...3.34456779*******************************99998744443335588*********************98642155557899999999999999999999998776655 PP

>> PF05958.6  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.1e-06    0.0084     193     268 ..      57     131 ..      44     144 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.1e-06
    PF05958.6 193 leeskgdllelycGnGnfslalaekfekvlateiakssveaaqanieankidnvqiirlsaeeltealkkkrefrr 268
                  l+++kg++lel  G G   l+      +v at+ ++s ++ a + i++ k +nv ++r++ e++ + l +  + +r
  MMETSP0890-20130614|22201_1  57 LRSAKGNVLELAAGTGS-NLSYYPSDCQVTATDASRSMLQKAATKINDTKKKNVLLLRVAVEDIPRLLLHTENNKR 131
                  677899*********96.678888889***********************************99877666555555 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.9e-05     0.039       1      74 [.      64     138 ..      64     163 .. 0.71
   2 ?   -3.1   0.0       6.6     9e+03      39      49 ..     186     196 ..     172     215 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-05
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss...kgl.kvkfvqadaralp...feegefdlvvca 74 
                  +l+l+ G+G ++          ++ +v++ D s  +l++a++++++   k++   ++ ++d+  l    +++++fd vv  
  MMETSP0890-20130614|22201_1  64 VLELAAGTGSNLSYYP------SDCQVTATDASRSMLQKAATKINDtkkKNVlLLRVAVEDIPRLLlhtENNKRFDTVVDT 138
                  7999****95444443......3479***************98887643333577777777755423346777***99964 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 6.6
    PF13649.1  39 lakerlsskgl 49 
                  +a+++l+++g+
  MMETSP0890-20130614|22201_1 186 YAAKHLQKWGC 196
                  45555555554 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.036      31     105 ..      61     138 ..      27     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.6e-05
                  ---EEE-------HHHHHHH----EEEEES-H....HHHHHHHHHHHHTT-TEEEEE--GGG------BSEEEEES-GG CS
    PF03848.9  31 pgkaldlGcGqGrnslflsllgydvtavdkne....asiailqeiaekenldlkaalydinaasldeeydfilstvvlm 105
                  +g +l+l  G G n  +    + +vta d +     ++ ++++++++k+ l l++a+ di  + l+ e +  + tvv  
  MMETSP0890-20130614|22201_1  61 KGNVLELAAGTGSNLSYYP-SDCQVTATDASRsmlqKAATKINDTKKKNVLLLRVAVEDIPRLLLHTENNKRFDTVVDT 138
                  6889**********77765.6899*****986111145567999*****************999988877777777754 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.15      27     103 ..      56     136 ..      42     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
                  S-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----....--EEE-ST....TTT--.--BS-EE CS
    PF05175.9  27 lpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen...vevlasdl....leeveekkfdliv 103
                  l    +g+vl+l++G+G    +l+   ++++vt++D++++ ++ a ++++++k +n   ++v  +d+    l++ ++k+fd++v
  MMETSP0890-20130614|22201_1  56 LLRSAKGNVLELAAGTG---SNLSYYPSDCQVTATDASRSMLQKAATKINDTKKKNvllLRVAVEDIprllLHTENNKRFDTVV 136
                  5556899*********9...5889999999***************999999988886667777777522213344466677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 802.94
//
Query:       MMETSP0890-20130614|22202_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-29  100.4   0.0    8.1e-29   99.7   0.0    1.3  1  PF04424.8 Protein of unknown function (DUF544)


Domain annotation for each model (and alignments):
>> PF04424.8  Protein of unknown function (DUF544)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   5.9e-33   8.1e-29       1     120 [.      21     148 ..      21     149 .. 0.97

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 5.9e-33
    PF04424.8   1 aNvLlLkskvkLptkkeqvteeeLvellvdvlldakdk.......kkenletdeqdlldllekLatGldvnvkfegiedFEltpelsiFrllkvplyHgWlvdpqdve.iveaigklsynelveklvk 120
                  +NvLlL+++++L ++   ++ e  v+++ ++ll+++ k       ++  + ++ +d+++ll+k+++Gldvnv++ g + FE+t+ ls+F+l +v l+HgWl dp+ +   ++a+g++ yne ve l+k
  MMETSP0890-20130614|22202_1  21 VNVLLLRNQLDLSSDYASISLETVVSMVGNYLLESNTKrsagdneLAVHTRQNLNDAIALLPKMESGLDVNVRLCGETLFEYTECLSVFDLCDVSLVHGWLCDPHAETeTARALGSRGYNEIVEMLIK 148
                  6***********************************999***9999999*******************************************************987669**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 975.66
//
Query:       MMETSP0890-20130614|22205_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-31  108.6   0.0    2.3e-31  108.2   0.0    1.1  1  PF04051.11 Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> PF04051.11  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   1.7e-35   2.3e-31       2     149 ..      13     160 ..      12     163 .. 0.95

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 1.7e-35
   PF04051.11   2 falLlqelVsyalr.qedeeevekkLeklGyrvGlrliErllarakaskrfkdildvlkfickdlWklvFgkqadnlktnhe.rgeyvlldnepplsefvelveersklsylafvcGiirGaLeslgfkaevtaevselrkprtkfeikv 149
                  f +L++e+V+y +r  e+++e+e+kLe++G+  G r +E + ++ ++ kr   + +++++i+ ++Wk ++gk+ad+l+ + e + ey++ d +p  + +++ ++e  +l++++f++G+  G+L+++gf a+v+a++ e    +t+f++++
  MMETSP0890-20130614|22205_1  13 FGYLFSEVVQYHVRhIETVSELERKLEDVGFALGRRFLEFVAIKDSNWKRNASEINIVQYISSSCWKALYGKNADSLERSTErDREYMIYDTKPLTNHYISVPKELGSLDCASFMAGLATGMLDAAGFVADVKAHTIEV--TTTVFLVRF 160
                  668***********555***************************9**************************************99********999*****777999******************************99..99****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 746.69
//
Query:       MMETSP0890-20130614|22206_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   73.1   0.0    2.7e-15   55.4   0.0    2.0  2  PF00743.14 Flavin-binding monooxygenase-like
    2.5e-17   63.0   0.0    5.2e-17   62.0   0.0    1.6  1  PF08241.7  Methyltransferase domain
    3.3e-17   63.0   0.0    7.9e-17   61.8   0.0    1.6  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    3.8e-13   49.1   0.0    7.2e-13   48.2   0.0    1.4  1  PF13847.1  Methyltransferase domain
    3.3e-11   43.3   0.0    7.6e-11   42.1   0.0    1.7  1  PF13649.1  Methyltransferase domain
    1.4e-10   41.3   0.0    3.3e-10   40.1   0.0    1.7  1  PF08242.7  Methyltransferase domain
    3.1e-10   39.8   0.5    1.7e-09   37.4   0.0    2.5  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    3.9e-10   39.5   0.0    8.1e-10   38.5   0.0    1.5  1  PF13489.1  Methyltransferase domain
    2.8e-09   36.2   0.0    1.2e-07   30.9   0.0    2.6  2  PF01266.19 FAD dependent oxidoreductase
    6.3e-09   35.0   0.1    4.3e-07   29.0   0.0    3.2  4  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
    1.6e-08   34.6   0.0    9.7e-07   28.7   0.0    2.4  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    7.8e-08   32.7   0.0    2.5e-06   27.9   0.0    3.2  2  PF12847.2  Methyltransferase domain
    2.2e-07   30.0   0.0    1.3e-06   27.5   0.0    1.9  2  PF01946.12 Thi4 family
    1.2e-06   27.7   0.1    2.2e-06   26.9   0.1    1.4  1  PF12831.2  FAD dependent oxidoreductase
    1.4e-06   27.3   0.0    0.00017   20.5   0.0    2.4  2  PF05834.7  Lycopene cyclase protein
    3.1e-06   26.1   0.5    8.1e-06   24.8   0.1    1.8  2  PF00890.19 FAD binding domain
    3.7e-06   26.8   0.1      3e-05   23.9   0.0    2.5  2  PF13659.1  Methyltransferase domain
    8.9e-06   25.8   0.3        0.3   11.3   0.3    3.0  3  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    0.00016   20.8   0.0    0.00027   20.0   0.0    1.3  1  PF01209.13 ubiE/COQ5 methyltransferase family
    0.00016   20.1   0.5    0.00054   18.4   0.1    2.0  2  PF03486.9  HI0933-like protein
     0.0016   17.7   0.0     0.0077   15.5   0.0    2.0  2  PF05175.9  Methyltransferase small domain
     0.0019   17.1   0.9     0.0032   16.4   0.6    1.3  1  PF01494.14 FAD binding domain
     0.0034   17.0   0.4      0.079   12.6   0.0    3.1  3  PF13454.1  FAD-NAD(P)-binding
     0.0064   15.4   1.0      0.012   14.6   0.7    1.4  1  PF01593.19 Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.019   13.7   0.3       0.19   10.4   0.2    2.1  2  PF01134.17 Glucose inhibited division protein A
      0.032   13.2   0.0      0.081   11.9   0.0    1.6  2  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
      0.044   13.3   0.0       0.09   12.3   0.0    1.4  1  PF13679.1  Methyltransferase domain
      0.054   12.7   0.0       0.14   11.4   0.0    1.5  1  PF05401.6  Nodulation protein S (NodS)
      0.095   12.7   0.0       0.24   11.4   0.0    1.6  1  PF07757.8  Predicted AdoMet-dependent methyltransferase
       0.16   10.9   0.0       0.31   10.0   0.0    1.4  1  PF00891.13 O-methyltransferase


Domain annotation for each model (and alignments):
>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   5.8e-18   2.7e-15       5     205 ..      31     222 ..      27     232 .. 0.89
   2 !   15.6   0.0   6.7e-06    0.0031     272     426 ..     300     454 ..     292     482 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 5.8e-18
   PF00743.14   5 aviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkk.esavfd.avmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrt 205
                   ++G+G+sGl++ +   e gl    +e++  +GG+w        Gr   y  +     k++  f     p   p++ +   +   + ++ k+  l   iq+ ++v+++k+  +f   G w      ++   e ++    v + tG +  p +p+     ++ f+G  +hs dy +p  +k++ v+viG G s+ +ia++l++ 
  MMETSP0890-20130614|22206_1  31 VIVGGGISGLTAARRLRESGLVVLLLEKARRLGGIWS-------GRG-TYECLRLQQHKDVFRFDGVEWPSSTPDYPKAHDVKSQIAAYVKKHRLDDCIQLGAQVTAIKRDEQF---GLWRTRYIYDECSpEIEIESrFVALATGSLGSPIIPKGLESSLQLFQGSKIHSADYYRPTSYKNRNVIVIGWGASSVEIAADLANR 222
                  589*********************************6.......554.5888888999999999999999***************************************99988...77887766665541444433147789*******************************************************99865 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6.7e-06
   PF00743.14 272 pkkralakepvlndelparilaGavkv.kssvkeltetsaifedgtveedidv....vifatGytfafpfleeslvkveknkvslykkvfpanlekptlaiiGliqplGsilptvelqarwavrvlkGlkklpsekelleeitekkekkakrfgeskskt 426
                  pk++    + ++ + + +++laG+++v  +s++  + ++   ++++  +di +    +i +tGyt   p l +  ++ +     +y +++ ++   p  a +Gl     si   ++lqa+  ++v  G   lps  e+ + i+    k ++++g++++ t
  MMETSP0890-20130614|22206_1 300 PKSGPIDGRIIVSEAFNDALLAGKIRViAASIIGAEPNALHVKEASPSKDIKIpatdLIICTGYTPPLPRLSNL-MQPKPTSTDFYDTMWAPEC--PNAAFLGLGFGFISISLLCDLQAKRLAQVATGSVSLPSVTEMNAWISSV--KAKNLMGTTQCLT 454
                  56666666788999999999****987256788877788888999999999876666899***********975.788889999******9976..5667788877888999999***********************9988877..4445555555544 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.1e-19   5.2e-17       1      94 [.     572     671 ..     572     672 .. 0.96

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1.1e-19
    PF08241.7   1 LdvGcGtglllealaer......paarvtgvDlseemlatakerlkeeglelvvadaeel..pfednsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                  LdvGcGtg+++++++++      + +++ g+Dl +emla+ak+r++ +   l++ +++++  p+++n fD+  ++ vl++++ + ++++e +R +kpgG+ +
  MMETSP0890-20130614|22206_1 572 LDVGCGTGAVARLVHDElphattQRSDWHGLDLTPEMLAVAKRRGQYNT--LRQWSITDTpwPVPENAFDLAPCNGVLMYVKPQLSVFAEFCRAVKPGGHAI 671
                  8********************************************9986..99999999988899**********************************987 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   1.7e-19   7.9e-17       1     197 [.      31     232 ..      31     235 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 1.7e-19
    PF13738.1   1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkaysfvrlhqpsffssdfgvndleklsldsspkwrikaelasgeeisayledvarrlglk..vrlstrvteveregdr..fevrv.tdg.....revrakalvlatgavskpktlglpg.....sadk...eavhleevlepedlkgkrvvVvGgghsAidallnLldlg..qkltwit 197
                  ++vG+G  Gl +a +l+e+g+  ++++++  + Gg w+  + + +l+  +        +d+++++  ++p+  +  ++++++++  + +  ++++ l   ++l+ +vt+++r+++   ++ r    +     +e++++ + latg   +p  +  +g     +        +h+ ++ +p ++k+++v+V+G g+s+++++ +L+  g    +t++ 
  MMETSP0890-20130614|22206_1  31 VIVGGGISGLTAARRLRESGLV-VLLLEKARRLGGIWSGRGTYECLRLQQ----H---KDVFRFDGVEWPS--STPDYPKAHDVKSQIAAYVKKHRLDdcIQLGAQVTAIKRDEQFglWRTRYiY-DecspeIEIESRFVALATGSLGSPIIP--KGlesslQ--LfqgSKIHSADYYRPTSYKNRNVIVIGWGASSVEIAADLANRGdcNSVTLVA 232
                  69********************.***************988888884433....2...3788888888876..4579********************999*************876678887743.3367899************65554433..33554542..133488************************************9656888875 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.6e-15   7.2e-13       5     110 ..     569     674 ..     566     706 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 1.6e-15
    PF13847.1   5 ikvlDlGCGtGylllelaeelgp....gakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle...esfDlvisnevlnaladpqkvlkeiervlkpggrlives 110
                  +++lD+GCGtG+ ++  ++el      +++ +G+D ++e++++Ak+r q + +      q +i++ +  ++   + fDl  +n+vl+ ++ + +v+ e +r +kpgg+ i+  
  MMETSP0890-20130614|22206_1 569 TQILDVGCGTGAVARLVHDELPHattqRSDWHGLDLTPEMLAVAKRRGQYNTLR-----QWSITDTP--WPvpeNAFDLAPCNGVLMYVKPQLSVFAEFCRAVKPGGHAILMI 674
                  58****************976654333555****************98877776.....99999988..667789********************************877544 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   1.7e-13   7.6e-11       1     101 []     571     668 ..     571     668 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.7e-13
    PF13649.1   1 ildlGCGsGrviraltral.dkg.peqrvigvDiseealelakerlsskglkvkfvqadara..lpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  ild+GCG+G v+r  +++l ++  +++  +g+D+++e+l+ ak+r +      +  q ++++  +p +e+ fdl  c  ++l++++p ql  +++e++r +kpgG
  MMETSP0890-20130614|22206_1 571 ILDVGCGTGAVARLVHDELpHATtQRSDWHGLDLTPEMLAVAKRRGQ----YNTLRQWSITDtpWPVPENAFDLAPCN-GVLMYVKP-QLS-VFAEFCRAVKPGG 668
                  8*****************85444355********************3....3356667776633789**********5.55*99876.544.8***********9 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   7.3e-13   3.3e-10       1      98 [.     572     669 ..     572     670 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 7.3e-13
    PF08242.7   1 LeiGcGtGsllrallekl.....pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  L++GcGtG+++r + ++l     ++++ +g+D+ p+++ + +++  +++  +    ++  +d     ++++fD++ +++vl ++k+  +v++++ +++kpgG+
  MMETSP0890-20130614|22206_1 572 LDVGCGTGAVARLVHDELphattQRSDWHGLDLTPEML-AVAKRRGQYNTLR----QWSITDTPWPVPENAFDLAPCNGVLMYVKPQLSVFAEFCRAVKPGGH 669
                  8*****************999999**************.4444444444333....33333322223337********************************7 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   3.7e-12   1.7e-09       1      36 [.      32      67 ..      32     101 .. 0.90
   2 ?   -2.3   0.0       9.4   4.3e+03      17      40 ..     564     587 ..     556     605 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 3.7e-12
    PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraa 36
                 IvG+G+sGl+aA++L+++g  vl+lek++rlGG ++
  MMETSP0890-20130614|22206_1 32 IVGGGISGLTAARRLRESGLVVLLLEKARRLGGIWS 67
                 9*******************************9766 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 9.4
    PF13450.1  17 kagkdvlvlekrdrlGGraasvev 40 
                  +++ + ++l+ + ++G  a+ v++
  MMETSP0890-20130614|22206_1 564 EKNIRTQILDVGCGTGAVARLVHD 587
                  457899999999999987776655 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.8e-12   8.1e-10      21     121 ..     566     683 ..     547     703 .. 0.73

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 1.8e-12
    PF13489.1  21 kpggrvLDiGcGtGillellaen.......gfdvtgvDpspaaigkakqaqksqfdeed.........aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas....l 121
                  + + ++LD+GcGtG++++l +++       + d +g D+ p++   ak+  + ++             + +p + fdl  ++ vl  v+   ++++++ +++kpgG+++l+ ++ +    +
  MMETSP0890-20130614|22206_1 566 NIRTQILDVGCGTGAVARLVHDElphattqRSDWHGLDLTPEMLAVAKRRGQYNT---LrqwsitdtpWPVPENAFDLAPCNGVLMYVKPQLSVFAEFCRAVKPGGHAILMIRDDNidawQ 683
                  45569***********99996643332222669******9998865333333333...1344677777888***************************************99875532331 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.5e-10   1.2e-07       1      42 [.      29      71 ..      29     111 .. 0.90
   2 ?    2.3   0.0      0.12        55       2      28 ..     203     231 ..     202     238 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 2.5e-10
                 EEEEE----HHHHHHHHHHHTT-EEEEEESS.STTSSCGGGS- CS
   PF01266.19  1 dvviiGgGivGlstAyeLarrglkVtllekg.diasgaSgrng 42
                 d vi+GgGi+Gl++A+ L ++gl V+llek  ++++  Sgr +
  MMETSP0890-20130614|22206_1 29 DAVIVGGGISGLTAARRLRESGLVVLLLEKArRLGGIWSGRGT 71
                 89*****************************999998888876 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.12
                  EEEE----HHHHHHHHHHHTT-..EEEEE CS
   PF01266.19   2 vviiGgGivGlstAyeLarrgl..kVtll 28 
                  v++iG G++ + +A +La rg   +Vtl+
  MMETSP0890-20130614|22206_1 203 VIVIGWGASSVEIAADLANRGDcnSVTLV 231
                  9********************99999998 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   6.6e+02     175     209 ..      15      46 ..       4      54 .. 0.66
   2 !   29.0   0.0   9.5e-10   4.3e-07     107     222 ..     116     232 ..     110     250 .. 0.84
   3 ?    0.7   0.0      0.38   1.7e+02     130     168 ..     337     374 ..     311     385 .. 0.72
   4 ?   -1.1   0.1       1.3   5.9e+02       5      25 ..     397     417 ..     395     424 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.5
    PF13434.1 175 fhsseylerkeellkkkriavvGsGqSaaeifldl 209
                   h  + l++   l+ k + ++vG+G S+   ++ l
  MMETSP0890-20130614|22206_1  15 KHVGQSLSS---LELKPDAVIVGGGISGLTAARRL 46 
                  444444444...3456677899**99997766655 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 9.5e-10
    PF13434.1 107 qleeqvrfgeeVeevepdeeeeeelltveskd.aegeeeellarnlvlgtG..tepylPealkkle..gkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqkaaelkwvt 222
                  +l++ ++ g++V++++ de+ +  l++ +    +   e e+++r + l+tG  ++p++P+ l++     + + +hs++y + +  + k++++ v+G G S  ei+ dl++r +  ++++v+
  MMETSP0890-20130614|22206_1 116 RLDDCIQLGAQVTAIKRDEQFG--LWRTRYIYdECSPEIEIESRFVALATGslGSPIIPKGLESSLqlFQGSKIHSADYYRPT--SYKNRNVIVIGWGASSVEIAADLANRGDCNSVTLVA 232
                  6778889999999999999753..5555543325667899***********888*******9987645468999*****9976..89************************9999999886 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.38
    PF13434.1 130 elltveskdaegeeeellarnlvlgtGtepylPealkkl 168
                  ++l+v+ + +  +  ++ a  l++ tG +p lP   + +
  MMETSP0890-20130614|22206_1 337 NALHVKEA-SPSKDIKIPATDLIICTGYTPPLPRLSNLM 374
                  56777764.445567888999999999999999877655 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 1.3
    PF13434.1   5 ligiGiGpfnLsLaalleeik 25 
                  ++g G+G  ++sL + l+ ++
  MMETSP0890-20130614|22206_1 397 FLGLGFGFISISLLCDLQAKR 417
                  689************999876 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.1e-09   9.7e-07       1     159 [.      29     254 ..      29     317 .. 0.70
   2 !    7.1   0.0     0.009       4.1       2     127 ..     203     371 ..     202     393 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.1e-09
                  SEEEE----HHHHHHHHHHHTTSEEEEECSSSSSTBTSGGHHHHHHHHHHHHHHHHHH.TSH.......................HHHHHHHHCTCEE......EHCHEEEEEETTTTEE...EEEEEEEEEEEETEEEEEEESEEEE---..-B----.TGCCHTEEEC.SSHHHHHHHHHHCSTTTEEEEE-..............................................- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.......................xxxxxxxxxxxxx......xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................x RF
    PF07992.9   1 dvviiGgGpaGlsaakdlaqkglkvaliekeggtcvnrgclpkkllvevaegreelee.lal.......................kvvdelekagiei......lleknvvkidsgskkv...vqeagavkadekgkgrdikydklviAtG..arprtl.gipgvevailargvedsdeilellekpkkvvvvG..............................................t 159
                  d vi+GgG+ Gl+aa++l+ +gl v+l+ek  +     g++++    +   + ++ ++ ++                        +          ++      +l+++v+ i+++++ +           +de + + +i+ + + +AtG  ++p+++ g++ + + + + +++++d  +    k+++v+v+G                                               
  MMETSP0890-20130614|22206_1  29 DAVIVGGGISGLTAARRLRESGLVVLLLEKARRL----GGIWSGRGTYECLRLQQHKDvFRFdgvewpsstpdypkahdvksqiaA-------YVKKHrlddciQLGAQVTAIKRDEQ-FglwR---TRYIYDECSPEIEIESRFVALATGslGSPIIPkGLESSLQLFQGSKIHSADYYRPTSYKNRNVIVIGwgassveiaadlanrgdcnsvtlvappkfdeniakfyedwclsrdlG 254
                  679*************************887754....444444443333333333332333557788888999888854443332.......2222255556688999999999966.86541...2334667778889***********5556888877776535566688999999998888877******99999888887777777777777777777666666666555544440 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.009
                  EEEE----HHHHHHHHHH..HTTSEEEEE.....CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH............................................HHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE----B----TGC CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9   2 vviiGgGpaGlsaakdla..qkglkvali.....ekeggtcvnrgclpkkllvevaegreeleelal............................................kvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtGarprtlgip 127
                  v++iG G+  ++ a dla  +    v+l+     +++    +   cl+  l +e+ + +    ++++                                            ++ d l +++i++ + ++++ +++ +        +vk+   +k  +i++  l+i+tG +p  + + 
  MMETSP0890-20130614|22206_1 203 VIVIGWGASSVEIAADLAnrGDCNSVTLVappkfDENIAKFYEDWCLSRDLGREITKNFCADPTRSEasleyrndllrdamatrhpgllealppplrpksgpidgriivseAFNDALLAGKIRV-IAASIIGAEPNAL-------HVKEASPSKDIKIPATDLIICTGYTPPLPRLS 371
                  8999999999999999997544456888889998666666677888888888887777766665444577777777777788888889999999999888888888777765555555666666.5556555555544.......344445566788***********999888665 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       2.3   1.1e+03      64      87 ..      21      43 ..       5      63 .. 0.65
   2 !   27.9   0.0   5.5e-09   2.5e-06       4     109 ..     570     672 ..     568     675 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 2.3
    PF12847.2 64 elsllerfDavllkg.ltldallal 87
                  +sl  ++Dav+++g    + l+a 
  MMETSP0890-20130614|22206_1 21 LSSLELKPDAVIVGGgI--SGLTAA 43
                 46677789*****9944..323333 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 5.5e-09
    PF12847.2   4 rilDlGcGtGslslelar.....lrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkgltldallaldeprrvlealpkllkpggrlvi 109
                   ilD+GcGtG ++   ++      ++ ++ +g+D+ +e+l++a+++  + +   + ++        + + e+ fD++ ++g  l  ++  + + +v+++  +++kpgg+ ++
  MMETSP0890-20130614|22206_1 570 QILDVGCGTGAVARLVHDelphaTTQRSDWHGLDLTPEMLAVAKRRG-QYNTLRQWSITDTP----WPVPENaFDLAPCNG-VLM-YV--KPQLSVFAEFCRAVKPGGHAIL 672
                  49**********99999988877667777******************.33333444444444....5555556******99.333.33..447789************9664 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.9e-09   1.3e-06       4      71 ..      13      80 ..      10     112 .. 0.80
   2 ?   -0.3   0.0      0.89     4e+02      13      39 ..     196     222 ..     186     231 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.9e-09
                 HHHHHHHHHHHH.TEEEEEEE-------HHHHHHHTSTS-EEEEESSS---------------EEEETT CS
   PF01946.12  4 iveryfedllky.aesDvvivGaGssGltaayylakkdlkvailerklsiGGGawlGGqlfskvvvrke 71
                 +v++  + l +  ++ D vivG+G sGltaa+ l +++l v++le+   + GG+w G   ++ + +++ 
  MMETSP0890-20130614|22206_1 13 MVKHVGQSLSSLeLKPDAVIVGGGISGLTAARRLRESGLVVLLLEKARRL-GGIWSGRGTYECLRLQQH 80
                 5555555555542567*****************************98877.579*99888877766665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.89
                  HHHTEEEEEEE-------HHHHHHHTS CS
   PF01946.12  13 lkyaesDvvivGaGssGltaayylakk 39 
                   +y + +v+++G G+s +  a  la++
  MMETSP0890-20130614|22206_1 196 TSYKNRNVIVIGWGASSVEIAADLANR 222
                  5788999***********999999987 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   4.7e-09   2.2e-06       1      45 [.      29      73 ..      29      90 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 4.7e-09
    PF12831.2  1 DvvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmltsglvat 45
                 D v+vGGg++G++AA +   +G+ vlL+e+ ++lGG +++ +   
  MMETSP0890-20130614|22206_1 29 DAVIVGGGISGLTAARRLRESGLVVLLLEKARRLGGIWSGRGTYE 73
                 779************************************988655 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.8e-07   0.00017       1     162 [.      29     191 ..      29     198 .. 0.73
   2 ?    4.3   0.0      0.03        14       2      36 ..     203     236 ..     202     261 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.8e-07
    PF05834.7   1 DlvivGaGlAglllAlrlreakpglrvllidagpkl..lfgnnytWsfeeedlge.ledlveasWkdteVrfddgkrklasraYgrvsskrleeellkrlveegvllleakvesveeeea.....eslv..vledgetiearlvidargasak....kaltvglqtflGvevevee 162
                  D vivG+G +gl  A rl  ++ gl vll++ ++ l  +++++ t ++   +  + + ++   +W+      ++ + + ++   + v+++rl +           + l a+v++++ +e+      +++  +++ + +ie+r+v  a+g  ++    k+l+ +lq f G +++   
  MMETSP0890-20130614|22206_1  29 DAVIVGGGISGLTAARRL--RESGLVVLLLEKARRLggIWSGRGTYECLRLQQHKdVFRFDGVEWPSSTPDYPKAHDVKSQ-IAAYVKKHRLDD----------CIQLGAQVTAIKRDEQfglwrTRYIydECSPEIEIESRFVALATGSLGSpiipKGLESSLQLFQGSKIHSAD 191
                  89****************..9999********9987557888888877665444337777777888777777776666666.333355555544..........445666666666666666655444422788888************77666899************9998765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.03
    PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagpkl 36 
                  ++++G G++ + +A+ l+++    +v+l+ a+pk 
  MMETSP0890-20130614|22206_1 203 VIVIGWGASSVEIAADLANRGDCNSVTLV-APPKF 236
                  89***************888888889999.55554 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.8e-08   8.1e-06       1      36 [.      29      64 ..      29      82 .. 0.93
   2 ?   -1.4   0.0       1.5   6.9e+02       2      27 ..     203     230 ..     202     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.8e-08
                 SEEEE-------HHHHHHHCHTT-EEEE-SS-CCGS CS
   PF00890.19  1 DvvViGsGlAGlaAAleaaeaglkvavvekeqetgg 36
                 D+v++G+G++Gl+AA +++e gl v+++ek+ + gg
  MMETSP0890-20130614|22206_1 29 DAVIVGGGISGLTAARRLRESGLVVLLLEKARRLGG 64
                 89****************************998776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.5
                  EEEE-------HHHHHHHCHTT..-EEE CS
   PF00890.19   2 vvViGsGlAGlaAAleaaeagl..kvav 27 
                  v+ViG G++    A+ +a++g   +v++
  MMETSP0890-20130614|22206_1 203 VIVIGWGASSVEIAADLANRGDcnSVTL 230
                  9******************997655555 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.8   1.7e+03      63      83 ..     532     552 ..     398     564 .. 0.71
   2 !   23.9   0.0   6.6e-08     3e-05       3     111 ..     570     670 ..     568     675 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 3.8
    PF13659.1  63 aellragsfdlvvtnpPygpr 83 
                  ae +++ sf+++ ++ Py+ r
  MMETSP0890-20130614|22206_1 532 AETYDDDSFEVLKFDSPYTTR 552
                  556788888888888888854 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 6.6e-08
    PF13659.1   3 rvldpgcGsGtfllaalell......aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvl 111
                  ++ld+gcG+G ++  + ++l      +++ +g++l p+ +a+a+r+ + +      ++rq++++d++ + ++++fdl  +n   +  +            ++++ +r++kpgG +
  MMETSP0890-20130614|22206_1 570 QILDVGCGTGAVARLVHDELphattqRSDWHGLDLTPEMLAVAKRRGQYN------TLRQWSITDTPWPVPENAFDLAPCNGVLMYVK--------PQLSVFAEFCRAVKPGGHA 670
                  69*****************66666789*****************997665......579******************98886665321........1224566666667777765 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   0.00065       0.3       2      34 ..      30      62 ..      29      66 .. 0.92
   2 ?   -1.6   0.0       7.3   3.3e+03      20      34 ..     122     136 ..     118     141 .. 0.80
   3 !   10.6   0.0    0.0011      0.51       1      29 [.     202     232 ..     202     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00065
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSS CS
   PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierrdrl 34
                  v+vGGG +Gl +A  l++ g  V ++e + rl
  MMETSP0890-20130614|22206_1 30 AVIVGGGISGLTAARRLRESGLVVLLLEKARRL 62
                 69*********************9999998877 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 7.3
                  HTTSEEEEEESSSSS CS
   PF00070.22  20 klgkkVtvierrdrl 34 
                  +lg++Vt i r +++
  MMETSP0890-20130614|22206_1 122 QLGAQVTAIKRDEQF 136
                  578899988888776 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.0011
                  EEEEE---HHHHHHHHHHHHTT..SEEEEEE CS
   PF00070.22   1 rvvvvGGGyiGlElAaalaklg..kkVtvie 29 
                  +v+v+G G + +E Aa la+ g  ++Vt++ 
  MMETSP0890-20130614|22206_1 202 NVIVIGWGASSVEIAADLANRGdcNSVTLVA 232
                  589*******************666999985 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     6e-07   0.00027      48     150 ..     568     671 ..     524     680 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 6e-07
   PF01209.13  48 gakvlDvagGtgDlafklsdsvgekg....kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlv 150
                   +++lDv +Gtg +a  + d++ +      + ++lD+ ++mL v++++ + ++  +           p  +++fD+      l  v  +l ++ e  r +kpGG+ +
  MMETSP0890-20130614|22206_1 568 RTQILDVGCGTGAVARLVHDELPHATtqrsDWHGLDLTPEMLAVAKRRGQYNTLRQ---WSITDTPWPVPENAFDLAPCNGVLMYVKPQLSVFAEFCRAVKPGGHAI 671
                  3489*********9987666554333333399*************99877666654...34455689************9999*********************865 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.2e-06   0.00054       2      37 ..      29      64 ..      28      74 .. 0.90
   2 ?   -1.5   0.0       1.3   5.7e+02       2      24 ..     202     224 ..     201     231 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
    PF03486.9  2 dviviGgGaAGlmaAisaakrgakVllldkakklgr 37
                 d +++GgG +Gl aA ++ + g  Vlll+ka++lg 
  MMETSP0890-20130614|22206_1 29 DAVIVGGGISGLTAARRLRESGLVVLLLEKARRLGG 64
                 789*****************************9985 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.3
    PF03486.9   2 dviviGgGaAGlmaAisaakrga 24 
                  +viviG Ga+ +  A+ +a+rg 
  MMETSP0890-20130614|22206_1 202 NVIVIGWGASSVEIAADLANRGD 224
                  79********9999999988874 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   1.2e+03      36      54 ..     396     414 ..     384     438 .. 0.78
   2 !   15.5   0.0   1.7e-05    0.0077      29      63 ..     565     599 ..     557     656 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.6
                  -B-------HHHHHHHH-T CS
    PF05175.9  36 lDlGcGaGvlgaalakesp 54 
                  + lG G G+++++l+   +
  MMETSP0890-20130614|22206_1 396 AFLGLGFGFISISLLCDLQ 414
                  55899******99876554 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.7e-05
                  TT------B-------HHHHHHHH-TT----EEES CS
    PF05175.9  29 kklagkvlDlGcGaGvlgaalakespelevtlvDi 63 
                  k+++ ++lD+GcG+G ++  + +e p+++ +  D 
  MMETSP0890-20130614|22206_1 565 KNIRTQILDVGCGTGAVARLVHDELPHATTQRSDW 599
                  458889********************987655443 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   6.9e-06    0.0032       3      34 ..      29      60 ..      27      65 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.9e-06
                 CEEE--------HHHHHHHHH.HHEEEEESSS CS
   PF01494.14  3 dVlIVGaGpaGlmlallLseaGvrvvlvekhs 34
                 d +IVG+G +Gl++a+ L+e G  v+l+ek +
  MMETSP0890-20130614|22206_1 29 DAVIVGGGISGLTAARRLRESGLVVLLLEKAR 60
                 679**************************987 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00017     0.079       1      45 [.      31      69 ..      31      87 .. 0.85
   2 ?   -0.7   0.0       2.1   9.6e+02       2      26 ..     205     226 ..     204     242 .. 0.79
   3 ?   -0.4   0.0       1.7   7.6e+02      66      99 ..     515     554 ..     479     582 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00017
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitvfdpspagaggvwrtd 45
                 +I+G+G++Gl++++rL ++      l + + +++    gg+w+ +
  MMETSP0890-20130614|22206_1 31 VIVGGGISGLTAARRLRES-----GLVVLLLEKARRL-GGIWSGR 69
                 6***************999.....5999999998776.7999876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2.1
    PF13454.1   2 IiGaGprGlsvlerLlarakkekpl 26 
                  +iG G++ + +++ L++r       
  MMETSP0890-20130614|22206_1 205 VIGWGASSVEIAADLANRG---DCN 226
                  8**************9994...444 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.7
    PF13454.1  66 s.........gpsfleWleaqgaeeaeelepddfppRalygeY 99 
                  +         ++ +++W+e+ +++   ++e  +f +     +Y
  MMETSP0890-20130614|22206_1 515 NssrfssedpSKAYAAWAETYDDD---SFEVLKFDSPYTTRDY 554
                  044444444479999999998852...3433333333333333 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.7   2.6e-05     0.012       1      28 [.      37      64 ..      37      70 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.6e-05
                 ----HHHHHHHH---EEEEEESSS---- CS
   PF01593.19  1 laGLaAArqLlqaGfdVtvlEArdrvGG 28
                 ++GL+AAr+L + G  V++lE   r+GG
  MMETSP0890-20130614|22206_1 37 ISGLTAARRLRESGLVVLLLEKARRLGG 64
                 8**************************9 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00041      0.19       1      31 [.      29      58 ..      29      71 .. 0.86
   2 ?    0.6   0.0      0.38   1.7e+02       1      28 [.     202     231 ..     202     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00041
                 SEEEE-------HHHHHHHH----EEEEES- CS
   PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                 d +++GgG +G+ AA  + ++G+ vlL+ +k
  MMETSP0890-20130614|22206_1 29 DAVIVGGGISGLTAARRLRESGLVVLLL-EK 58
                 579**********************999.33 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.38
                  SEEEE-------HHHHHHHH--..--EEEE CS
   PF01134.17   1 dviViGgGhAGceAAlaaarlG..akvlLi 28 
                  +viViG G + +e A+ +a++G   +v+L+
  MMETSP0890-20130614|22206_1 202 NVIVIGWGASSVEIAADLANRGdcNSVTLV 231
                  59******************9943456665 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.3   3.8e+03     102     123 ..     190     211 ..     188     217 .. 0.82
   2 ?   11.9   0.0   0.00018     0.081     162     257 ..     568     672 ..     550     681 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 8.3
    PF06325.8 102 kkyykPvrigerltivpsweey 123
                   +yy+P+   +r +iv  w  +
  MMETSP0890-20130614|22206_1 190 ADYYRPTSYKNRNVIVIGWGAS 211
                  689********99999999665 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00018
    PF06325.8 162 geevlDvGtGSGiLa......iaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevallkelpkekadvivaN.IL..aevlieLaedikelvkeggllil 257
                  ++++lDvG+G+G  a      +  a    ++ +++D+ +  + vak+  ++N +++ ++ + ++  +p++ +d+  +N +L   ++  +   +++++vk+gg++il
  MMETSP0890-20130614|22206_1 568 RTQILDVGCGTGAVArlvhdeLPHATTQRSDWHGLDLTPEMLAVAKRRGQYNTLRQwSI-TDTPWPVPENAFDLAPCNgVLmyVKPQLSVFAEFCRAVKPGGHAIL 672
                  4699********887533333334555667789***********************655.6899**************5331134556778899999999999986 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0002      0.09      19      74 ..     561     617 ..     549     626 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0002
    PF13679.1  19 eaakeegsltvvDvGaGkgYLafvlasylkeke.yklkvvgidvkeelvekaeelae 74 
                  ++++++ +++++DvG+G g  a+ +++ l ++  ++   +g+d+ +e+ + a+++ +
  MMETSP0890-20130614|22206_1 561 TTQEKNIRTQILDVGCGTGAVARLVHDELPHATtQRSDWHGLDLTPEMLAVAKRRGQ 617
                  456788899******************88777559************9999988755 PP

>> PF05401.6  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0003      0.14      45     142 ..     569     670 ..     561     686 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0003
                  ----EE------HHHHHG...GG..BSS..EEEEES-TTT---HHHHTTT-SSEEEEES-TTT---SS-BS-EEE-S-GGGSSSHHHHHHHHHHHHHTB-----E CS
    PF05401.6  45 analevGcaaGaftekla...py..ckr..ltvidvvpeaierarervkksshisWvvsdvqqfsteekfdlivvaevlyyledveelraavenlvkllapdgql 142
                  ++ l+vGc +Ga++  +    p+  ++r     +d+ pe ++ a++r + ++  +W ++d      e+ fdl  +  vl y++    +     ++ + ++p+g+ 
  MMETSP0890-20130614|22206_1 569 TQILDVGCGTGAVARLVHdelPHatTQRsdWHGLDLTPEMLAVAKRRGQYNTLRQWSITDTPWPVPENAFDLAPCNGVLMYVKPQLSVF---AEFCRAVKPGGHA 670
                  6789********8764431113311344224579****************99*****************************98755443...3445555555555 PP

>> PF07757.8  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00053      0.24      43      77 ..     552     586 ..     524     594 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00053
    PF07757.8  43 aaylivlwkktrseeketsfvdvgcgngllvyvla 77 
                    y++  w  t+ ++ +t + dvgcg g +  ++ 
  MMETSP0890-20130614|22206_1 552 RDYVLAYWPTTQEKNIRTQILDVGCGTGAVARLVH 586
                  5799************************9877765 PP

>> PF00891.13  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00069      0.31     102     127 ..     569     594 ..     562     612 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00069
                  SEEEE--------HHHHHHHSTT-EE CS
   PF00891.13 102 sslvDVGGGtGalaaaivsayPhikg 127
                  ++++DVG GtGa+a+ ++++ Ph + 
  MMETSP0890-20130614|22206_1 569 TQILDVGCGTGAVARLVHDELPHATT 594
                  589********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.91
# Mc/sec: 1924.99
//
Query:       MMETSP0890-20130614|22213_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.014   14.7   0.0    1.3  1  PF00355.21 Rieske [2Fe-2S] domain
      0.021   14.4   0.0      0.031   13.9   0.0    1.2  1  PF10080.4  Predicted membrane protein (DUF2318)


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.1e-06     0.014      25      85 ..      58     114 ..      43     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-06
                  EEEEEE.CTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTC CS
   PF00355.21  25 dlvvvr.dkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpat 85 
                  +l +v    +g+i+++++ C+   + l +g+ ++   ++++C + g  y+l++g  + gp++
  MMETSP0890-20130614|22213_1  58 PLRLVAaRINGKIYVFEAACSRCSWDLNKGQIID---NHIVCALCGQSYNLKNG--KPGPFK 114
                  455555679************9999999995443...45*************87..556655 PP

>> PF10080.4  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.5e-06     0.031       5      66 ..      45     107 ..      43     112 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-06
    PF10080.4   5 gklhryeyaedgkevrffvikksdgklrvafdaCevC..ekkgYvqkgdklvCknCnvriales 66 
                  gkl+ +e+  ++k +r+++ ++ +gk+ v   aC+ C  + +  +  ++++vC  C+++++l++
  MMETSP0890-20130614|22213_1  45 GKLKGWELGPEEKPLRLVA-ARINGKIYVFEAACSRCswDLNKGQIIDNHIVCALCGQSYNLKN 107
                  5666667777777888766.788899999999*****764444457799*********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.84
# Mc/sec: 447.89
//
Query:       MMETSP0890-20130614|22236_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 975.66
//
Query:       MMETSP0890-20130614|22241_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-16   57.5   0.2    1.3e-15   57.1   0.1    1.1  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   9.2e-20   1.3e-15      12     133 ..      45     159 ..      37     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 9.2e-20
                  TTSEEEEEEECSTTSSTTEEEESBEEETTTTSHHHHHHHHHHHHHHS-EEEEEEEEEEEEEEETTCCCSEEEEEEEEEEEEETGGGCSTTTSTEEEEEEEEHHHHHHHHHCTTHHHHHHHHH CS
   PF00293.23  12 edgkvLlvqrsrskltapglwefPgGkvdkgEspeeaAvRElkEEtGidlekvrlvgvanydaptddpkreevifflaelpddepeiilnttEvsevrwvpleelldlalagklryliplll 133
                   ++++Ll   +r +    g w   gGk ++gE++ee+A+REl+EE+G+++   +++ ++++ + ++++  ++v++f ++  ++ep ++    +  + +w+   el+ +++ +++  ++p +l
  MMETSP0890-20130614|22241_1  45 RNKQILLGLKKRGF--GIGKWNGFGGKFEPGETAEECARRELFEECGVKAISLEWRATLFFTFQDSGK-LMRVHVFETRNFKGEPRET----DEMAPKWFQETELPLHQMWHDDTFWMPIFL 159
                  33488888888886..89************************************************96.9999999999999996666....5589***************99998888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.33s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 785.01
//
Query:       MMETSP0890-20130614|22272_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   66.0   0.0    2.7e-18   65.6   0.0    1.2  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0     2e-22   2.7e-18       4      91 ..      66     161 ..      63     164 .. 0.85

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 2e-22
                  ---CT-EEEEEEEEEE.-...--EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT......S.TT-EEEEEE CS
   PF00254.23   4 kakegdtVtvhyegkled...gtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk......ippnatlvfev 91 
                   +k g+tV+++y  +l++   g+ + +  +++ p+ +++G+g++ kg ee+l+ m+vG+ r++++p elaYg+ g+  +       ippnatl  e 
  MMETSP0890-20130614|22272_1  66 PPKIGQTVSIDYSLWLDGfdsGKQLSKG-EKGGPVYVQLGEGKLPKGVEEALLSMRVGGIRRIIVPAELAYGSTGYPRQGenkgaiIPPNATLYIEL 161
                  5789************534457777777.7*******************************************7774433667779*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 710.92
//
Query:       MMETSP0890-20130614|22279_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.84
# Mc/sec: 279.57
//
Query:       MMETSP0890-20130614|22289_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   31.8   7.9    3.2e-07   30.1   5.7    1.6  1  PF01148.15 Cytidylyltransferase family


Domain annotation for each model (and alignments):
>> PF01148.15  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   5.7   2.3e-11   3.2e-07     111     211 ..      81     187 ..      10     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.3e-11
   PF01148.15 111 lyvvlflslllianileglivalllilvvwanDifAylvGkafGkt.llpkispkKTveGflggfvaavlvgllfslvlskrl..........lsllhllllsllaslvavf 211
                  +y++   +l++ +    +  +a+++i+ ++++D  A +vG++fG+   +p  + +K+ +G+l+++++a ++++++   ++             + +   +l+s++++lv+ +
  MMETSP0890-20130614|22289_1  81 IYCI---VLVFATLLWRNSTAAVVAISQMAVGDGVADIVGRRFGQSaKWP--NSEKSYAGSLAFVFGASIATFVLLRWFEFMAclaplpfdtvTLFARIFLISIVCALVELI 187
                  2333...334556666788999************************5555..689*****************9998876655499*99966666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 697.12
//
Query:       MMETSP0890-20130614|22292_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    6.8   7.4          7    6.2   4.8    1.6  1  PF08947.5 BPS (Between PH and SH2)
        5.5    7.1   8.1        6.4    6.9   5.6    1.1  1  PF09736.4 Pre-mRNA-splicing factor of RES complex


Domain annotation for each model (and alignments):
>> PF08947.5  BPS (Between PH and SH2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.8     0.001         7      20      47 ..      11      41 ..       7      43 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.001
    PF08947.5 20 VIdNpaEAlSvalEE...gqAWRkksgrrla 47
                 V++  +EA  +a EE   ++AW+ +s+ r a
  MMETSP0890-20130614|22292_1 11 VVEAEKEAKKAAEEEaaeARAWKIGSNTRAA 41
                 889999******99732268*******9976 PP

>> PF09736.4  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.6   0.00094       6.4      19      69 ..      12      63 ..       4      73 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00094
    PF09736.4 19 eekekekkeekekkeeeekewgkglvqkeeaekkleeeekakkkpl.aryed 69
                  e+eke+k+  e++ +e++ w+ g   ++  ++ ++ e++a+k+++ a+++ 
  MMETSP0890-20130614|22292_1 12 VEAEKEAKKAAEEEAAEARAWKIGSNTRAASREATAAEKHAEKMKYeAEKKA 63
                 3445555578888899999******999999999999999999887333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1404  (0.102692); expected 273.4 (0.02)
Passed bias filter:                      781  (0.057124); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.48s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 289.08
//
Query:       MMETSP0890-20130614|22309_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   23.6   0.1    2.7e-05   23.0   0.1    1.4  1  PF00036.27 EF hand
    8.2e-05   22.0   0.0    0.00012   21.4   0.0    1.3  1  PF13833.1  EF-hand domain pair
    8.7e-05   22.4   0.0    0.00012   21.9   0.0    1.3  1  PF13499.1  EF-hand domain pair
    0.00022   20.7   0.1    0.00042   19.8   0.1    1.4  1  PF13405.1  EF-hand domain
    0.00035   19.6   0.2    0.00068   18.7   0.1    1.4  1  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.039   12.9   0.0      0.051   12.5   0.0    1.1  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.2e-08   2.7e-05       2      27 ..      56      81 ..      55      83 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealk 27
                 +++ Fk++D+D++Gk++++Ef +++k
  MMETSP0890-20130614|22309_1 56 IDDEFKLADTDRNGKLTKNEFTSWYK 81
                 6788*****************99876 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.4e-08   0.00012      25      48 ..      54      77 ..      29      82 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.4e-08
    PF13833.1 25 eevdilfrefDtdgdGkisfeEFc 48
                 + +d+ f+++Dtd++Gk++++EF 
  MMETSP0890-20130614|22309_1 54 SVIDDEFKLADTDRNGKLTKNEFT 77
                 6799*******************7 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.5e-08   0.00012       2      27 ..      56      81 ..      29      90 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5.5e-08
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllk 27
                 + ++Fkl D+d++g+l+k+e++ + k
  MMETSP0890-20130614|22309_1 56 IDDEFKLADTDRNGKLTKNEFTSWYK 81
                 44567777777777777777777665 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.8e-07   0.00042       4      27 ..      58      81 ..      55      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.8e-07
                 ---GCC-------B---HHHHHHH CS
    PF13405.1  4 eaFklfDkdgdGkidaeELrdaLr 27
                 + Fkl D+d++Gk++++E+ ++++
  MMETSP0890-20130614|22309_1 58 DEFKLADTDRNGKLTKNEFTSWYK 81
                 66******************9988 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     3e-07   0.00068       2      21 ..      57      76 ..      56      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3e-07
                 HHHHHHH--S----B-HHHH CS
    PF13202.1  2 kdtFrafDlNgDGkIsreEL 21
                 +d F+ +D+++ Gk+++ E+
  MMETSP0890-20130614|22309_1 57 DDEFKLADTDRNGKLTKNEF 76
                 667****************9 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.3e-05     0.051     128     221 ..      44     141 ..      41     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
                  GEEEETT--EEE--..----EEECEESS-CSS----GGGS-HHHHHTSHHHHHHH...HHHHHHHHHHHHHC---TTTST.HHHHHHHHHCCCHHTTS-- CS
   PF00069.20 128 NiLldkkgelkiaD..FGlakkleksseklttlvgtreYmAPEvllkakeytkkv...DvWslGvilyelltgklpfsge.seedqleliekilkkklee 221
                  Ni++ ++ +  ++D  F la   + +++klt+   t++Y   E+l++ + ++ ++   D+ ++++ l+ ++     ++ +  ++d++++ +k+ +k +++
  MMETSP0890-20130614|22309_1  44 NIFIPQQAQASVIDdeFKLAD--TDRNGKLTKNEFTSWYKGNELLNEPPPIGFPIiafDLSAIAIGLAGVYAAAYTWYITqMNADAEAMARKQAEKANKR 141
                  9************98999998..8**********************999999865444888999999999999988885515555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.72
# Mc/sec: 509.23
//
Query:       MMETSP0890-20130614|22318_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-31  107.0   0.0      1e-30  106.7   0.0    1.0  1  PF05724.6 Thiopurine S-methyltransferase (TPMT)
    2.2e-05   24.6   0.0    3.3e-05   24.0   0.0    1.2  1  PF13649.1 Methyltransferase domain
      8e-05   22.9   0.0    0.00013   22.3   0.0    1.3  1  PF08241.7 Methyltransferase domain
     0.0001   22.5   0.0    0.00025   21.3   0.0    1.6  2  PF08242.7 Methyltransferase domain
    0.00083   18.8   0.0     0.0019   17.7   0.0    1.5  1  PF13847.1 Methyltransferase domain
     0.0013   19.2   0.0     0.0022   18.4   0.0    1.4  1  PF12847.2 Methyltransferase domain
     0.0099   15.4   0.0      0.013   15.0   0.0    1.3  1  PF13489.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05724.6  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   5.1e-34     1e-30       4     181 ..      17     189 ..      14     207 .. 0.86

  Alignments for each domain:
  == domain 1    score: 106.7 bits;  conditional E-value: 5.1e-34
                  ---HHHHHT..T--TT--SSSTHHHHHHHHCHT-S---EEE-TT----HHHHHH-BTTBEEE---S-HHHHHHHHHH----CCCCCB---EEEE.......B.-TTTSTTTT-..ECEEEEESSCCCS-HHHHHHHHHHHHHHC-SEEE.EEEEECS-S..SS---------HHHHHHCHT.- CS
    PF05724.6   4 dfWekrwee..eqipfhqeevnpllkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvkeysageiellcgdvFtlraeelgkfdliydraalvAlppelreryakslaelLkpdgeglLvtldypq..aeheGPPfsvpeaelealls.a 181
                    We  w++    ++f+  +  + l   +d+    + +++lvP+ G+a+d++ lA++g+ v+++++s+ A++k+     l   ++  +  k  + g+iel+c d+F +++++  +fdl++d  +l+Al+p+ r+++ak+  +lL p+g   L+t+  p+  a+++GPP++++ + ++ lls  
  MMETSP0890-20130614|22318_1  17 STWEGMWQDldPGTAFDVAQPSKCLEAVIDS---LPIGKTLVPGAGRAYDAALLASKGNPVIALDISKTAIKKA--GSYL-ASLSDDDPLKP-KEGSIELICDDFFEYSPKDG-PFDLVWDCTFLCALDPSQRQDWAKTTSSLLGPKGV--LCTMIFPIgkADNNGPPYNLSLDIVQSLLSpL 189
                  57999999722569***************99...6777***********************************5..3333.33444444444.679*************9995.*********************************99..99999986226777*******99999999844 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.7e-08   3.3e-05       5     101 .]      57     156 ..      54     156 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.7e-08
    PF13649.1   5 GCGsGrviraltraldkgpeqrvigvDiseealelakerlss....kgl......kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  G G + +++ l+   +kg    vi++Dis+ a+++a ++l+s    + +       ++ +++d+ +++ ++g+fdlv     +l+ l+p+q ++  + ++++l p+G
  MMETSP0890-20130614|22318_1  57 GAGRAYDAALLA---SKG--NPVIALDISKTAIKKAGSYLASlsddD-PlkpkegSIELICDDFFEYSPKDGPFDLVWDC-TFLCALDPSQRQDWAKTTSSLLGPKG 156
                  455555555555...445..79*************998887766642.3466778**********************974.44788999999999999999999887 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.4e-08   0.00013       3      94 ..      56     159 ..      54     160 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6.4e-08
    PF08241.7   3 vGcGtglllealaerpaarvtgvDlseemlatakerlkeegle...........lvvadaeelpfednsfDvvvssevlehl..edpekalkeiaRvLkpgGllv 94 
                   G+G+ + +++la++ ++ v+++D+s++++++a   l+  + +           l++ d+ e   +d+ fD+v+   +l+ l   ++++  k    +L p G+l+
  MMETSP0890-20130614|22318_1  56 PGAGRAYDAALLASK-GNPVIALDISKTAIKKAGSYLASLSDDdplkpkegsieLICDDFFEYSPKDGPFDLVWDCTFLCALdpSQRQDWAKTTSSLLGPKGVLC 159
                  699************.***************9988887776668888999999*****************************98777778888888888888775 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.2   6.3e+03      60      79 ..      25      44 ..      22      49 .. 0.75
   2 !   21.3   0.0   1.3e-07   0.00025       4      99 .]      57     158 ..      54     158 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.2
    PF08242.7 60 dldggssfDvvvasnvlhhl 79
                 dld+g +fDv+  s +l+++
  MMETSP0890-20130614|22318_1 25 DLDPGTAFDVAQPSKCLEAV 44
                 67778899998777777766 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.3e-07
    PF08242.7   4 GcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg......ssfDvvvasnvlhhl..kdirevldnirklLkpgGvl 99 
                  G+G +  +  l+ k  +  ++++Dis+ ai++a   la+ ++++  + +   ++l+ +d        + fD+v+ + +l +l   +++++ +   +lL p Gvl
  MMETSP0890-20130614|22318_1  57 GAGRAYDAALLASK--GNPVIALDISKTAIKKAGSYLASLSDDDPLKPKEGSIELICDDFFeyspkdGPFDLVWDCTFLCALdpSQRQDWAKTTSSLLGPKGVL 158
                  55555555555555..99**************************999999999988877779********************999999*************987 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.5e-07    0.0019      10     107 ..      56     159 ..      42     162 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.5e-07
    PF13847.1  10 lGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieelekl.le.....esfDlvisnevl..naladpqkvlkeiervlkpggrli 107
                   G+G  y++  la++ +    v+ +Dis++ai++A   +++l  +  ++  +g+ie +    +e      +fDlv +  +l   + +  q+  k  +++l p+g+l+
  MMETSP0890-20130614|22318_1  56 PGAGRAYDAALLASKGN---PVIALDISKTAIKKAGSYLASLSDDdPLKPKEGSIELICDDfFEyspkdGPFDLVWDCTFLcaLDPSQRQDWAKTTSSLLGPKGVLC 159
                  699999*******8854...4***************95555544445555555555544444445555599***988666643333444566666677777777665 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.1e-06    0.0022       9     107 ..      57     158 ..      49     161 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.1e-06
    PF12847.2   9 GcGtGslslelarlrpgakvvgvDpseeslelarena.......ksldleeriellqgdakeelsllerfDavllkgltldallal.deprrv.lealpkllkpggrl 107
                  G+G  + ++ la+  +g  v+++D+s+ +++ a   +       + + +e  iel++ d++e +  +++fD+v +  +    l al + +r+   +   +ll p+g+l
  MMETSP0890-20130614|22318_1  57 GAGRAYDAALLAS--KGNPVIALDISKTAIKKAGSYLaslsdddPLKPKEGSIELICDDFFEYSPKDGPFDLVWDCTF----LCALdPSQRQDwAKTTSSLLGPKGVL 158
                  8999999999999..9999***************88844455432344556777999999899999999******442....33334233333144555777777766 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.8e-06     0.013      30     113 ..      57     159 ..      33     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.8e-06
    PF13489.1  30 GcGtGillellaengfdvtgvDpspaaigk......................akqaqksqfdeedaaepagkfdlivarevlehvp..dpeellrqiaellkpgGyll 113
                  G+G  + ++lla +g  v++ D+s+ ai+k                       ++ ++  +      +++g+fdl+    +l+ ++  + + + ++  +ll p G+l 
  MMETSP0890-20130614|22318_1  57 GAGRAYDAALLASKGNPVIALDISKTAIKKagsylaslsdddplkpkegsieLICDDFFEY-----SPKDGPFDLVWDCTFLCALDpsQRQDWAKTTSSLLGPKGVLC 159
                  8888899***********************9999977777777777777755444444444.....55789**************95447799************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.64
# Mc/sec: 823.75
//
Query:       MMETSP0890-20130614|22334_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 691.91
//
Query:       MMETSP0890-20130614|22341_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   99.8   0.0    1.6e-28   99.3   0.0    1.1  1  PF11977.3 Zc3h12a-like Ribonuclease NYN domain


Domain annotation for each model (and alignments):
>> PF11977.3  Zc3h12a-like Ribonuclease NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   1.2e-32   1.6e-28       1     145 [.      80     236 ..      80     241 .. 0.91

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 1.2e-32
    PF11977.3   1 klrtivIDGsNVAmshgkskffsvrglllavehfrkrghe.eitvflpql.rkka.............ldkkvkeqeaLeelikkgllvvvpsrevegkrissydDrvilelAeekdgvivsnDnfrdlad.....eskelkdiiekrllkytfvgdklmlpddp 145
                  k+++ivIDG+NVAm++g++k fs +g+++++++f ++  + + +++lp++  +++              ++  ++ e+L+ l+ +g++ ++p++         ydD++ +e+A++  g+ivsnD frd ++      + e+ ++ + +l++ytf gd++++++d 
  MMETSP0890-20130614|22341_1  80 KQKPIVIDGANVAMRYGQGKQFSTNGIRICLNFFQDKCPDaTLAIILPEYvLDSNkvsakkrsgrytkAQEVPDNVEYLKTLQAQGIVHITPAQD--------YDDSYQIEYARRHHGIIVSNDLFRDAIKklsplVQHEFASWLQSHLVSYTFIGDDFIPNPDF 236
                  5789******************************9875431677888888644447899*******98888999******************888........7***************************99999899***********************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|22346_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-06   26.5   0.1    2.9e-06   26.5   0.1    1.0  1  PF01593.19 Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   2.1e-10   2.9e-06     381     449 ..      12      79 ..       2      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.1e-10
                  EEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHH CS
   PF01593.19 381 dtvvtrWstdplargsysyvsvgssgddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAari 449
                   ++  +W t+p++++  +   + +     + l++p+   +ffAG  t   y+g veGA++S+lr+ +++
  MMETSP0890-20130614|22346_1  12 AIHSAHWITEPFTYAKPPSALPDTRNYGHKLLSQPHHEAVFFAGTETE-PYHGHVEGALRSALRVTDQV 79 
                  66677899999999976666666668899*******************.778************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        99  (0.00724108); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.28s 00:00:00.60 Elapsed: 00:00:00.60
# Mc/sec: 331.50
//
Query:       MMETSP0890-20130614|22348_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-19   69.3   0.0    6.2e-19   68.7   0.0    1.2  1  PF12710.2  haloacid dehalogenase-like hydrolase
      5e-09   36.8   0.2      3e-07   31.0   0.1    2.1  1  PF00702.21 haloacid dehalogenase-like hydrolase
    0.00026   20.1   0.0    0.00057   19.0   0.0    1.5  1  PF06888.7  Putative Phosphatase
     0.0036   17.4   0.0     0.0061   16.7   0.0    1.4  1  PF13419.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   1.8e-22   6.2e-19       1     189 [.      48     218 ..      48     218 .. 0.70

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 1.8e-22
                  EEE------B---.........HHHHHHHHH--H..........HHH........HHHHHHHHHHHHT-HHHH----HHHHHHHHHH........H--B.HHHHHHH.......HTTEEEE-SS-HHHHHHHHH.---EE--B--GGG-----HH----HHHHHHH........HHSHHHHHHHH---T.T----S--EE---GGGHHH CS
    PF12710.2   1 avFDkDGTLteddtdflryllklldvlgealakdasl.......aslkdstcltlsdpkdllellaeyggirviglaarylealake.ieeaklfegfi.pdaaellkelhea.glrvvvlsgdprliakpvak.elgidevnvlateledegggkvdgritgkld........gKaraverlvvlayk.qvggrivvaiGDsanDlpa 189
                  ++FD+D TL++++          +d l+++ ++   +       +       ++ +   ++++ la    +r++ ++       + + +++++  ++++ p+aae++++l ++ g  v+++sg+ r +++pva+ elg+ + ++la++ +    ++  g + g++         gK  a++ l     k + g++ vv+iGD+a+D +a
  MMETSP0890-20130614|22348_1  48 VCFDFDSTLICEEG---------IDELAKYCGA---GeavatwtK-------KAMDGGTRFQDALA----ARLDLIKPS-----RQDvEQCLIKHPPLLsPRAAEFVQSL-RMhGKAVHIVSGGFRAMIEPVAAtELGVSANDILANTIY----WDEAGNYAGFNPnemtaadgGKPKAIAHL-----KrTRGYNTVVMIGDGATDAQA 218
                  8************6.........8888888754...222343321.......12233345555555....333333222.....22212221111444477778*****8.663777***************999**************5....5566666555445567999**********.....88999*************875 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   8.8e-11     3e-07     107     199 ..      98     218 ..      45     223 .. 0.62

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 8.8e-11
                  H......HHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC....SEEEEHHH.......................TTSHHHHHHHHHHHTS-GG..GEEEEESSCTTHHH CS
                  x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxx.......................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
   PF00702.21 107 a......qaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi....dslvfaev.......................kPepklfvaaieeLqidpg..evamvGDgvnDapa 199
                         q++   +i+    + p aae+v+sL+  g  v +++g+ + + e +a+ +      d  + a+                        kP      +ai  L+  +g   v+m+GDg +Da+a
  MMETSP0890-20130614|22348_1  98 DlikpsrQDVEQCLIKHPPLLSPRAAEFVQSLRMHGKaVHIVSGGFRAMIEPVAATELGvsanD--ILANTiywdeagnyagfnpnemtaadggKP------KAIAHLKRTRGynTVVMIGDGATDAQA 218
                  1223333466666777778899*****************************9887663237662..333337777777788888999888554554......45555555555559***********98 PP

>> PF06888.7  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-07   0.00057       3     181 ..      48     215 ..      46     220 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.7e-07
    PF06888.7   3 vvfDFDktiidedsdnwvvdelpatelfeelretlrkglwnelmdrvlkelheqgvseadikkvlrsip..lspglvelikslakkkleldliiiSDaNsffieeileaagledlFseiftNPaavdasGeltvlpyhehs.CklcpsNlCKgkvleelvaeqaregveyerliYvGDganD 181
                  v fDFD t+i e+  + + +  +a e  +   ++   +  +++ d + ++l+  + s +d++++l + p  lsp+  e ++sl+   ++  + i+S   +  ie  + a++l    ++i++N  + d+ G+         +  +++++   K k + +l++ +   g  y+ ++ +GDga D
  MMETSP0890-20130614|22348_1  48 VCFDFDSTLICEEGIDELAKYCGAGEAVATWTKKAM-DGGTRFQDALAARLDLIKPSRQDVEQCLIKHPplLSPRAAEFVQSLRM--HGKAVHIVSGGFRAMIEP-VAATELGVSANDILANTIYWDEAGNYA-----GFNpNEMTAADGGKPKAIAHLKRTR---G--YNTVVMIGDGATD 215
                  78***********99999999999999888887777.5679***********************988876679**********44..57889***********97.578889999999***********9864.....3221346677778888888888773...4..7888888888888 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.8e-06    0.0061       1     128 [.      48     171 ..      48     197 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.8e-06
    PF13419.1   1 ivFDldgTLidfdfvikralrklvaerlgldltaaelrelggkpfeevladllrelpkdaeeilealkeanlesrlelfpdvvellrrlkakglklvilSngsaeavelllek.lgle..dlfdavftsdd 128
                  + FD+d TLi  +    + l+k+ + + +   t+ +  ++gg++f+++la+ l+  +     +++++++   ++ + l p ++e+++ l+ +g  + i+S g ++++e + +  lg+   d   +++ +d+
  MMETSP0890-20130614|22348_1  48 VCFDFDSTLICEEGI--DELAKY-CGAGEAVATWTKKAMDGGTRFQDALAARLDLIKP----SRQDVEQCLIKHPPLLSPRAAEFVQSLRMHGKAVHIVSGGFRAMIEPVAATeLGVSanDILANTIYWDE 171
                  569999999988883..566666.55555557888888889*******9988886544....556666677778999************99****************986554255555455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.67
# Mc/sec: 922.78
//
Query:       MMETSP0890-20130614|22349_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.4e-100  334.0   0.1   7.4e-100  333.7   0.0    1.0  1  PF00225.18 Kinesin motor domain


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.7   0.0  5.4e-104  7.4e-100       1     333 [.      35     349 ..      35     351 .. 0.94

  Alignments for each domain:
  == domain 1    score: 333.7 bits;  conditional E-value: 5.4e-104
                  EE---SHHHHHTTCEBEEEEESSEEEEEEEECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHC CS
   PF00225.18   1 RvrplnekekeekseeeveveeskkeeekkskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerak 333
                  Rvrp ++ e e+  + +++        ++ +++ ++ +k+k++tFd+vfd +++q+++y+e+ ++lv svl+Gynv+ifaYGqtgsGKT+tm+G    +++G   +al +lF + +++++e   + +++v+++E+Yne+i+DLL++  +  kk l++r+++  g+ +v glt+v+v+  +evlel++  ++ r+ ast++n++SSRSH+i+++ +e++n  + +    ++ + l+LvDLAGsEr++k+ga +++ lkEa+nINkSL+aLg+vI+a a+   ++h+p+R+S LT+lLqdsL+ +sktlm++++sp   n++e+++tL+fa+r+ 
  MMETSP0890-20130614|22349_1  35 RVRPPSKLEIEHGDTAQCVS-----FPNDGEISIENGRKHKTWTFDRVFDFNSSQDQIYSEV-SELVISVLDGYNVCIFAYGQTGSGKTFTMTGP--LKDRGCNLKALTDLFARSKQRRSE--IRDTITVTVIEVYNEQIRDLLAPPGAPIKK-LEVRRNEY-GNNHVPGLTTVTVQGDHEVLELMQISDQVRAQASTNMNDTSSRSHMIMSVLVESRNIREPSA---STRGMLHLVDLAGSERLDKSGA-TGQALKEAQNINKSLSALGDVIAARAQG--NSHIPFRNSTLTHLLQDSLSQDSKTLMFCCISPVLYNADESTCTLNFASRVG 349
                  99999999999999998865.....478889999999************************5.9******************************6..5668**************998877..888********************9766555.****9887.77*****************************************************9875444...679******************5.6888************************..*************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 1052.19
//
Query:       MMETSP0890-20130614|22366_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00092   18.9   0.5     0.0013   18.4   0.3    1.2  1  PF07321.7  Type III secretion protein YscO
  ------ inclusion threshold ------
      0.015   15.1   0.4      0.024   14.4   0.3    1.2  1  PF05267.7  Protein of unknown function (DUF725)
      0.044   13.3   0.2      0.059   12.9   0.1    1.2  1  PF09769.4  Apolipoprotein O
      0.075   12.8   0.4      0.075   12.8   0.3    1.6  2  PF12296.3  Hydrophobic surface binding protein A
       0.23   11.5   2.5       0.36   10.8   1.7    1.3  1  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF07321.7  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   4.8e-07    0.0013      60     118 ..      73     131 ..      36     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.8e-07
    PF07321.7  60 qgktvllkeleklqqqvgllrekeaelesqlaeakqrleaererlrqarkqlqearkaq 118
                    + +  k +e++ ++++ lr++   + ++++ ++++ e+  +  +qa +q+q  +k +
  MMETSP0890-20130614|22366_1  73 SSSNIYAKHVEAYAHEISELRNQLSTYDQKIDTITKTCEQRVQIVEQALRQAQSSNKST 131
                  5677889*****************************************99999988876 PP

>> PF05267.7  Protein of unknown function (DUF725)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   8.6e-06     0.024      17      98 ..      74     155 ..      71     165 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.6e-06
    PF05267.7  17 lnkvaatysaeynaCikaadneteqiledaaeerkaiqasaeslcsaltaCdslndavdafeCyanagsensktlysisaNa 98 
                  +++++a++ + y + i++  n+ +  +++++   k+ ++ ++ + +al++ +s n+++ +f+ + + g ++   l+ i a a
  MMETSP0890-20130614|22366_1  74 SSNIYAKHVEAYAHEISELRNQLSTYDQKIDTITKTCEQRVQIVEQALRQAQSSNKSTPSFNYFGTIGFSSLTFLFFIGASA 155
                  678999*******************************************************************999999877 PP

>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.2e-05     0.059      26     109 ..      60     149 ..      36     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.2e-05
    PF09769.4  26 akllgensl........ysvrptdrLeaqirsaRlfleeklsavedavntvksrvldtersvtstvaslkpppeellPgliyilvaglaGsI 109
                  +++l+++s+        +  +++++ + +i+++R +l+++ + +    +t ++rv+ +e++  ++ +s k+ p   +  ++ i++++l+ ++
  MMETSP0890-20130614|22366_1  60 ERALEQSSMqpddsssnIYAKHVEAYAHEISELRNQLSTYDQKIDTITKTCEQRVQIVEQALRQAQSSNKSTP--SFNYFGTIGFSSLTFLF 149
                  3333333333333345577788888888899999999999888888888888888888888888888888888..7899999****998555 PP

>> PF12296.3  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.9   5.3e+03      57      70 ..      45      58 ..      37      66 .. 0.64
   2 ?   12.8   0.3   2.7e-05     0.075       6      64 ..      78     137 ..      73     144 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.9
    PF12296.3 57 asaplteeeslqll 70
                 a +++t+++s + +
  MMETSP0890-20130614|22366_1 45 AHDEITSQDSVDAI 58
                 45666666666655 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.7e-05
    PF12296.3   6 visdinnIstavtaldtainaytggl.lealkilsasaalvsaikqattdakasapltee 64 
                  + +++++ +  +++l+++++ y+ ++ + + +++++++ +++a++qa +  k++++++++
  MMETSP0890-20130614|22366_1  78 YAKHVEAYAHEISELRNQLSTYDQKIdTITKTCEQRVQIVEQALRQAQSSNKSTPSFNYF 137
                  666777777788888888888887774556778999999999999999999999999876 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.7   0.00013      0.36      31      82 ..      64     131 ..      44     135 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   PF00804.20  31 srilaspdpd................kqtkeeleeltaeikklankirskLksleqsieqeegqnrss 82 
                  +++ + pd++                ++++++l +  ++i ++ + ++++++ +eq  +q +++n+s+
  MMETSP0890-20130614|22366_1  64 EQSSMQPDDSssniyakhveayaheiSELRNQLSTYDQKIDTITKTCEQRVQIVEQALRQAQSSNKST 131
                  55566666446888888998999999999999999999999999999999999999988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1114  (0.0814804); expected 273.4 (0.02)
Passed bias filter:                      780  (0.0570509); expected 273.4 (0.02)
Passed Vit filter:                       121  (0.0088502); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 604.30
//
Query:       MMETSP0890-20130614|22397_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-18   64.2   0.7    9.6e-17   60.5   0.5    2.1  1  PF09423.5  PhoD-like phosphatase
  ------ inclusion threshold ------
       0.33   10.2   3.1        1.3    8.3   0.8    2.7  2  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF09423.5  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.5   1.4e-20   9.6e-17     178     386 ..      54     249 ..       2     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.4e-20
    PF09423.5 178 kryaqyktdpdlqalhaavpwivvwDDHEv.aNdaakdgaenhqeeegdvearkaaAlqAyfEwmPirepaaegd.eeriyrsfkyGdladlfmLDtRqyrr.....dqqleyakkk.aeeae....dpsrtllGeeQeqwLkeeLkastatWkviaqqvlfgkldldaakeelpvnldawdGyeaererlleal...keagirnvVvLtGDvHaawasdlkpd 386
                  + y+   + p++  ++ ++p+i++wDDH   +Nd +           g+ ++ k  A + + ++  i + + ++  +  + +s+++ d +++++LDtR yr+     d++ +   +k          + +rt+lGe+Q qwL+++Lk++    ++i++ + +                + w   + er+rl++ l    +a+ +++++LtGD+H     ++++ 
  MMETSP0890-20130614|22397_1  54 NAYNELAAKPSFIGARSTIPMIMIWDDHDYgKNDGY-----------GSNNEMKSFAKEKFLDFFDIYDER-RDYiSRGLQKSYQFED-LQIILLDTRWYRSafdptDENYAV--YKeR---YlpsyEIDRTMLGEDQWQWLEAQLKEPA-ALRLIVSTIQIIADG---------HGWECWRMLPRERDRLYRLLkkySQANGKDIILLTGDRHVGGLYKYQDV 249
                  56888889999999**************87467777...........4445789999999*******9777.566577799*******.9************76544333322..2212...1233479******************995.567887777663322.........35789**********999995544667888*********9877777665 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.8   0.00018       1.3      28      54 ..      26      52 ..      21     191 .. 0.78
   2 ?   -0.3   0.0     0.077   5.3e+02       6      40 ..     197     237 ..     192     252 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00018
                 HHTTTSEEEEE-TTSSGHHCHHHHHHH CS
   PF00149.23 28 aeekpdlvlflGDlvdrgdwssetlal 54
                 ++ ++dl++ +GD+v+++ +s+++  l
  MMETSP0890-20130614|22397_1 26 VSLNVDLLILGGDNVYGDCHSEGCPEL 52
                 67899***************9988655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.077
                  EEEBTBBHHHHH....H..HHHHHHHHHHHTTTSEEEEE-T CS
   PF00149.23   6 igDlHgglddle....g..lllilleiaaeekpdlvlflGD 40 
                  i+D Hg+  +         l ++l++  + ++ d++l +GD
  MMETSP0890-20130614|22397_1 197 IADGHGWECWRMlpreRdrLYRLLKKYSQANGKDIILLTGD 237
                  55666666666665541467788888899999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 1020.67
//
Query:       MMETSP0890-20130614|22413_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-11   42.9   0.0      5e-11   42.4   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
      1e-10   41.8   0.0    2.4e-10   40.5   0.0    1.6  1  PF12697.2  Alpha/beta hydrolase family
    3.7e-08   32.7   0.0    9.2e-08   31.4   0.0    1.7  1  PF00326.16 Prolyl oligopeptidase family
     0.0001   21.8   0.0    0.00014   21.4   0.0    1.2  1  PF07859.8  alpha/beta hydrolase fold
    0.00026   20.5   0.2       0.23   10.9   0.0    2.2  2  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.011   14.3   0.0      0.016   13.7   0.0    1.3  1  PF03283.8  Pectinacetylesterase
      0.096   12.1   0.1       0.22   10.9   0.0    1.5  1  PF01764.20 Lipase (class 3)
       0.11   11.2   0.0       0.25   10.0   0.0    1.5  2  PF10216.4  CO2 hydration protein (ChpXY)


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.9e-14     5e-11      16     142 .]      58     262 ..      34     262 .. 0.61

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 2.9e-14
    PF12695.2  16 eplaealakrgfavvavdlpghgasegaa.aakrvl.......................aadll...dleriilvGhSlGGgvalelagrddrvkglvllapf...........pdgedlakltl........................................pvllihGtrDgvvppeeaeklakalp.gdael............vviegasHf 142
                  +p+     +++fav+ ++++ + +  g +   +++l                       +   +   +  + il+GhS+GG+ al +a+ + +v+  +++ap+                                                              p+l++ G +D+ vppe  +++a +++ +++ +            + i+ga+Hf
  MMETSP0890-20130614|22413_1  58 APYILSSKEKKFAVAEIEYRRRESGGGWPnSCQDMLmavekvraryfehedeeqqeqknK---EkikKSIQFILLGHSAGGHGALFVAN-YFQVALCIAVAPVadllaaherklS---------DdgdaamrfvladrninrakesleslliaaspvhsmlplkcPTLIVTGLDDHDVPPEMTHEFALKAKqAAKNItsnvdvqrtiefLQIPGADHF 262
                  333334455689999999988888766665333333455666699999999886654433...145577799**************999.6677777777774222222233320.........02223333344555555555555666666666666666666********************555555333333555555777777********8 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.4e-13   2.4e-10      46     221 ..      86     267 ..      36     271 .. 0.64

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.4e-13
                  S--HHHHHHHHHHHHHH--...................--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTE..............EEEE---SSSS-...- CS
    PF12697.2  46 pdtledlaadlaalldalgl..................rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpga..............rvvvlpgagHllflea 221
                  p++++d++ +++++ ++                      +++l+GHS Gg  al++a +    v+ +++++p++                 lla+ ++ l d   +a +r++ +d+  ++++++ ++l   l      a++ + +  l++P+l+++g +D+ vppe+  ++a ++++a              ++  +pga+H+  l+a
  MMETSP0890-20130614|22413_1  86 PNSCQDMLMAVEKVRARYFEhedeeqqeqknkekikksIQFILLGHSAGGHGALFVANYFQ--VALCIAVAPVA-------D---------LLAAHERKLSDDG-DAAMRFVLADRNINRAKESLESL---L----IAASPVHSMLPLKCPTLIVTGLDDHDVPPEMTHEFALKAKQAaknitsnvdvqrtiEFLQIPGADHFSLLDA 267
                  44444444444444443333455555555555444322246*************9998765..***********.......4.........3333333332222.23333333333333333333322...2....5567777777899***************5555444433333223334455666666999********99996 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   5.4e-11   9.2e-08      65     187 ..     125     261 ..      87     274 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 5.4e-11
                  GEEE--------HHHHHHHH-GGG---E..EEE-----TTTGGGS-.......---GGGGT---TTS.HHH.HHHHHHH-GGG---.----EEEEEETT-SSS-THHHHHHHHHHH............--SEEEEEES---- CS
   PF00326.16  65 rlaitGgSyGGylvgaalnqrpdlFkaa..vaqvgvvdwltymsdtsl.....lteaeymeygnpee.neegyeelspyspadnvk.aypplllihGeeDdrvppaealklvaaLq..........kagknvlllifpdegH 187
                  + ++ G+S+GG+ ++ ++n     F++a  +a+++v+d+l+ ++ +        ++  +  + n ++ +e   + l ++sp++ +   ++p+l+++G+ D  vpp+ + +++ + +          + + ++++l  p+++H
  MMETSP0890-20130614|22413_1 125 QFILLGHSAGGHGALFVAN----YFQVAlcIAVAPVADLLAAHERKLSddgdaAMR-FVLADRNINRaKESLESLLIAASPVHSMLpLKCPTLIVTGLDDHDVPPEMTHEFALKAKqaaknitsnvDVQRTIEFLQIPGADH 261
                  56789**************....777764479***********9964476664222.233333333335555567899999999999************************9999966666666544455566666666666 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.9e-08   0.00014       4     196 ..      38     240 ..      35     254 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.9e-08
                  E------.SS-TGGG..HHHHHHH..HHHHTSEEEEEE---T.TTS-TTHHHHHHHHHHHHHHHTT............TTHTCCCC.EEEEE-------HHHHHHHHHHH-----EEEEEEES----T.S-CHHHHHH.THHCTSTTSS-HHHHHHHHHHHSSGGGGGSTTTSGGGSS-HTT---EEEEEE..EE-TTS----HHHHHHHH---- CS
    PF07859.8   4 fHGGGfv.lgsadth..dalcrrl..akelgavvvsvdYrlA.PehrfPaavedalaalrwlaeqa............welgadps.rivvaGdSaGGnLaaavalrardegepeiaaqvliyPgtdl.ertesesqelaeeladgplltrdamdlfwrlylpeadrddplaspllasdlsglpptlvvva..elDplrdegeayaerlraagve 196
                  +HGG +    s++++  d+l+  +  +ke + +v  ++Yr+       P  ++d+l a++ ++++              + ++++s + +++G SaGG+ a+ va  ++      +a ++ + P+ dl +++e++  +   ++a   +l  ++++ + +  l   +    +asp+++  l   +ptl+v++   +D+  +   ++a + ++a ++
  MMETSP0890-20130614|22413_1  38 IHGGFWKeNYSVENAgiDTLAPYIlsSKEKKFAVAEIEYRRReSGGGWPNSCQDMLMAVEKVRARYfehedeeqqeqkNKEKIKKSiQFILLGHSAGGHGALFVANYFQ------VALCIAVAPVADLlAAHERKLSD-DGDAAMRFVLADRNINRAKES-L---ESLLIAASPVHS-MLPLKCPTLIVTGldDHDVPPEMTHEFALKAKQAAKN 240
                  6666665444444445544433321267778888888888654778899**************999999****99984478899998******************7775......679******99995555444443.334445455655555543333.3...222358999977.5665699999998335666666666666666666655 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0016       2.7      45      91 ..     122     173 ..     109     205 .. 0.67
   2 !   10.9   0.0   0.00013      0.23     174     220 ..     207     267 ..     200     269 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0016
                  S...EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--....HHSHCSHSTTCH CS
   PF00561.15  45 k...ltlvGhSmGGmialayaaeypdrvkamvllgtva....vlsdglssdvln 91 
                  k   ++l+GhS GG  al +a  ++  v+ ++++++va     ++  ls+d ++
  MMETSP0890-20130614|22413_1 122 KsiqFILLGHSAGGHGALFVANYFQ--VALCIAVAPVAdllaAHERKLSDDGDA 173
                  44559*********99999998887..477777777654445344444444333 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00013
                  -TSSEEEEECCTTSCCHHCH.HHH.HHHCSTT............EEEEEETTHHCSHHHHS CS
   PF00561.15 174 ilvptlvisgtdDplvpyka.sek.laelipk............sqlvvidgpgHlafldk 220
                   ++ptl++ g dD+ vp+++ +e+ l++++              ++++ i+g+ H+++ld+
  MMETSP0890-20130614|22413_1 207 LKCPTLIVTGLDDHDVPPEMtHEFaLKAKQAAknitsnvdvqrtIEFLQIPGADHFSLLDA 267
                  68************88887615666666666588888999888889999999999988876 PP

>> PF03283.8  Pectinacetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.2e-06     0.016     150     183 ..     117     150 ..     110     212 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.2e-06
    PF03283.8 150 kkglkkakqviLsGcSAGGlaallhvdkfrellp 183
                  k+++kk+ q iL G SAGG +al+ +++f+  l 
  MMETSP0890-20130614|22413_1 117 KEKIKKSIQFILLGHSAGGHGALFVANYFQVALC 150
                  5699************************987775 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.22      53      85 ..     113     145 ..      86     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
                  HHHHHHHHSTTSEEEEE-------HHHHHHHHH CS
   PF01764.20  53 elkrllekypdykivvtGHSLGGalAlLaaadl 85 
                  e k+  + ++++++++ GHS GG  Al +a ++
  MMETSP0890-20130614|22413_1 113 EQKNKEKIKKSIQFILLGHSAGGHGALFVANYF 145
                  444444444579**************9998765 PP

>> PF10216.4  CO2 hydration protein (ChpXY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00014      0.25     289     343 ..      22      76 ..       8      81 .. 0.82
   2 ?   -3.8   0.0       2.4   4.1e+03     186     222 ..     235     271 ..     226     272 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
    PF10216.4 289 eyykkslrgeddlrvkicisfqksmfcvtsaaikglapypldtedpeeqaanray 343
                  + ++++  +e+++ + i   f k  ++v +a i +lapy l++++++ + a+ +y
  MMETSP0890-20130614|22413_1  22 RLHRRKDNDEEAVFIIIHGGFWKENYSVENAGIDTLAPYILSSKEKKFAVAEIEY 76 
                  4456666778889999999************************999877777666 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.4
    PF10216.4 186 aaagkPitykveikgee.yeilPksagltfLvdaavPy 222
                  ++a+k it +v+++ +  +  +P    +  L da+ Py
  MMETSP0890-20130614|22413_1 235 KQAAKNITSNVDVQRTIeFLQIPGADHF-SLLDASSPY 271
                  4677778888887765414445554444.355666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       703  (0.051419); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.44s 00:00:01.11 Elapsed: 00:00:00.76
# Mc/sec: 892.33
//
Query:       MMETSP0890-20130614|22406_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   16.5   0.0       0.02   14.9   0.0    1.9  1  PF10551.4 MULE transposase domain


Domain annotation for each model (and alignments):
>> PF10551.4  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-06      0.02       9      92 ..     360     457 ..     349     458 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-06
    PF10551.4   9 galltakvlvgvdeedegv.plafalvedesaeswt...wfle...tlkkalne.............k.pvvvitDgdkalakAikevfpdarhrlClwHilrnv 92 
                  g+ll+    vg++ +++ + + a  ++++es++swt    +l+    +     +             +  ++  tDg+k+l  A+++++++a h +   H+++n+
  MMETSP0890-20130614|22406_1 360 GTLLS---TVGYSTNRDLIlVGATHVAQNESEDSWTrhhLCLKracAVD----DddagdldfiswidRsSTIHSTDGEKGLVPALRKTMQNAVHYRDPNHLEKNM 457
                  45555...5688888888845578899*********8765666555222....12344677777787678999*********************99888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       790  (0.0577823); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.68
# Mc/sec: 2290.64
//
Query:       MMETSP0890-20130614|22427_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-27   93.9   0.0      2e-26   92.4   0.0    1.8  1  PF00588.14 SpoU rRNA Methylase family
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.026   14.5   0.0    1.5  1  PF08032.7  RNA 2'-O ribose methyltransferase substrate binding


Domain annotation for each model (and alignments):
>> PF00588.14  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     3e-30     2e-26       2     141 ..     147     300 ..     146     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 3e-30
                  ---EEES-S-------HHHHHHH------EEE-.--S-TTSHHHHHHC---TTTS--EE-S----HHHHHHHH.----E----...---EGGGS-TTS-EEEEE--------HHHHHH-S-..........-EE---.--------HHHHHHHHH CS
   PF00588.14   2 livvldeiedpgNlGaiaRtaaafgaselilvkprsvdllnkkakrasagalellelkvvksleealkdlkee.glkviatsl...kgkslreielkekvalvfGnEdkGlsnellekade..........lvkIpm.sgeveSLNvavAvaill 141
                  l++++d+i+dpgN+G+++Rtaaa+g +++++v+++s d +++ka+ra++ga + l+l++ +s+ ea+k l++e +l+v a++l   ++++ + +++  + a+++G E  Gls++ll++ de          +v+Ip+ +g veSLN avA +++l
  MMETSP0890-20130614|22427_1 147 LVLACDNISDPGNVGTLIRTAAAIGTDAILIVGSQSCDQFSPKALRAAMGATFRLPLHRSDSWTEAMKLLRHEwNLHVRAADLdplTSQDHDLVDWLIPSAIIVGAE-VGLSDDLLTLLDEkykkndsafsRVHIPImNGAVESLNAAVAGSVIL 300
                  7899*********************************************************************777777777765555666666999**********.9*******99997567777777789***6699************997 PP

>> PF08032.7  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.7e-06     0.026       1      75 [.      76     139 ..      76     140 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.7e-06
    PF08032.7   1 lieGlhaVeeALksgpriekllvtegradkrleellklakkkgikvqlvskkkLdklsgtvnHQGvvaevkppey 75 
                  l+eG++++ +  ++   i +l++ eg         l+    +  ++ +vs+++L++   t ++QG  a ++pp+ 
  MMETSP0890-20130614|22427_1  76 LLEGIRLITDSAQT-CDIDTLILAEG-------VDLNV---QAKRIVRVSDRVLKACGTTTTPQGALALCRPPQL 139
                  57777777777777.34888888888.......22222...22479**************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1081.78
//
Query:       MMETSP0890-20130614|22425_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-22   78.2   0.0    6.5e-22   77.3   0.0    1.4  1  PF00107.21 Zinc-binding dehydrogenase
      0.002   18.9   0.0     0.0047   17.7   0.0    1.6  1  PF13602.1  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   9.5e-26   6.5e-22       1     117 [.     214     337 ..     214     351 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 9.5e-26
                  ----HHHHHHHHH-.-EEEEEESSHHHHHHHHH--.--EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----.......EEEEEEEHHHHHHCT--EEE--SSS CS
   PF00107.21   1 GvGlaavqlAkalG.arviavdsseeklelakelG.adhvinskdedfvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggts.......ganvefdlrklllkektiqGsllgn 117
                  +vG+ a qlAk +G +rvi++++++ek +++ e    d++in+k++d++++i el+++ gvd +++ vg g+t+e+ l  + + Gr++++g++s         ++  + + +l ++++iqG ++++
  MMETSP0890-20130614|22425_1 214 AVGSVAGQLAKLRGaKRVIGIAGTPEKCKFLLEECnLDATINYKTDDLATKIDELCPD-GVDCYFDNVG-GKTLEVILTKMNYFGRITFCGAISgynakddAIPPLQNYMSVLTRRLKIQGLICAD 337
                  69***************************9877766**********************.**********.************************78776533333335577888999999988887 PP

>> PF13602.1  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.9e-07    0.0047       4     126 ..     251     389 ..     249     390 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.9e-07
    PF13602.1   4 devidyrdedf......lagdgvDvvldtvg.eageelleallrvlggGrlvsigg..............klltaaareggaarkllflfsvkan...........eeraeeleelaalveaGklkpvvdrv.fpLeeaaeAhrrlesgrarGKiV 126
                  d++i+y+++d       l +dgvD  +d+vg +++e +l+++      Gr+  +g+              +             +++ +++++ +           +  +  + el+a+ + +kl    + v  p +e +   r l sg  +GK+V
  MMETSP0890-20130614|22425_1 251 DATINYKTDDLatkideLCPDGVDCYFDNVGgKTLEVILTKMN---YFGRITFCGAisgynakddaipplQ-------------NYMSVLTRRLKiqglicadhlsDISSC-FGELLAYHKRNKLVFKEHIVsKPVDEYPNVVRMLYSGANTGKLV 389
                  8899***88888*****99************555555555554...4488633333445665444443221.............222222211112333444345333333.78888888888877665555588888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 1532.91
//
Query:       MMETSP0890-20130614|22465_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       595  (0.0435196); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.51s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 187.71
//
Query:       MMETSP0890-20130614|22479_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-35  121.1   4.1      1e-21   76.5   0.4    2.0  2  PF13424.1  Tetratricopeptide repeat
    2.3e-28   97.0   8.0    4.2e-16   58.1   0.1    2.9  3  PF13374.1  Tetratricopeptide repeat
    1.2e-16   59.9   9.8    2.4e-12   46.1   1.2    1.9  2  PF13414.1  TPR repeat
    2.2e-14   52.2   9.0    1.9e-07   30.2   1.1    2.5  3  PF00515.23 Tetratricopeptide repeat
    8.9e-14   50.0   0.1    1.7e-06   27.2   0.0    2.3  2  PF13176.1  Tetratricopeptide repeat
    1.6e-12   46.1   4.0    2.1e-05   23.9   0.7    2.3  2  PF07719.12 Tetratricopeptide repeat
    4.8e-09   35.2   2.8    0.00025   20.4   0.0    2.1  2  PF13181.1  Tetratricopeptide repeat
    1.5e-08   34.4   0.3     0.0015   18.9   0.0    2.2  2  PF13428.1  Tetratricopeptide repeat
    2.5e-08   34.2   1.2    3.7e-08   33.6   0.8    1.3  1  PF13432.1  Tetratricopeptide repeat
    8.7e-07   28.5   7.6      0.038   14.0   0.0    3.8  3  PF13431.1  Tetratricopeptide repeat
    6.3e-05   22.6   1.2       0.19   11.5   0.2    2.1  2  PF04212.13 MIT (microtubule interacting and transport) domain
    0.00014   21.8   0.0     0.0085   16.3   0.0    2.3  2  PF07721.9  Tetratricopeptide repeat
    0.00027   21.0   0.5       0.22   11.9   0.0    2.2  2  PF13174.1  Tetratricopeptide repeat
    0.00033   20.6   0.0     0.0028   17.6   0.0    1.6  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
     0.0016   18.3   0.2       0.44   10.4   0.0    2.2  2  PF12688.2  Tetratrico peptide repeat
     0.0058   16.3   0.5       0.26   11.0   0.1    2.2  2  PF07720.7  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   14.3   0.0        1.2    7.8   0.0    2.0  2  PF04910.9  Transcriptional repressor TCF25
      0.054   13.0   0.0      0.063   12.8   0.0    1.2  1  PF09141.5  Talin, middle domain


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.4   1.3e-24     1e-21       5      77 ..       1      74 [.       1      75 [. 0.97
   2 !   51.7   0.1   7.3e-17   5.6e-14       1      53 [.      39      92 ..      39      94 .] 0.98

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.3e-24
    PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                 at+lnnla +l  +g+ydeA  lye+a+ +  ++lg++hpd+a+ lnnla l+  +g+y eA +++e+Al+i e
  MMETSP0890-20130614|22479_1  1 ATTLNNLARLLGNQGEYDEAKPLYERAIGIrEKTLGPNHPDLAKGLNNLAALLDNQGKYYEAMPLYERALKISE 74
                 79****************************99999*************************************87 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 7.3e-17
    PF13424.1  1 hpdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnla 53
                 hpdla+ lnnla +l  +g+y eA  lye+al++  +++g++hp +a+ lnnla
  MMETSP0890-20130614|22479_1 39 HPDLAKGLNNLAALLDNQGKYYEAMPLYERALKIsEEKFGPNHPLVATGLNNLA 92
                 9****************************************************9 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1   5.5e-19   4.2e-16       2      42 .]       1      41 [.       1      41 [. 0.99
   2 !   41.5   0.1   9.2e-14     7e-11       5      41 ..      46      82 ..      42      83 .. 0.96
   3 ?    1.5   0.5      0.35   2.6e+02       1      10 [.      84      93 ..      84      94 .] 0.85

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 5.5e-19
    PF13374.1  2 aaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                 a++lnnLA++l ++g+y+eA +l+e+a  ir++ lG++HPd
  MMETSP0890-20130614|22479_1  1 ATTLNNLARLLGNQGEYDEAKPLYERAIGIREKTLGPNHPD 41
                 89**************************************8 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 9.2e-14
    PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHP 41
                 lnnLA +l ++g+y eA +l+e+al i ++ +G++HP
  MMETSP0890-20130614|22479_1 46 LNNLAALLDNQGKYYEAMPLYERALKISEEKFGPNHP 82
                 9***********************************9 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.35
    PF13374.1  1 taaalnnLAl 10
                 +a+ lnnLA 
  MMETSP0890-20130614|22479_1 84 VATGLNNLAA 93
                 6888****95 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   1.2   3.2e-15   2.4e-12       4      68 ..       2      73 ..       1      74 [. 0.88
   2 !   24.3   0.9   2.1e-08   1.6e-05       2      45 ..      42      93 ..      41      94 .] 0.88

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 3.2e-15
    PF13414.1  4 ealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAlaylklgkdyeeAledyekAleld 68
                  +l++l+  l ++g+ydeA  +ye+A+ ++     pn+++    ++nlA+++ ++g +y eA+  ye+Al+++
  MMETSP0890-20130614|22479_1  2 TTLNNLARLLGNQGEYDEAKPLYERAIGIRektlgPNHPDlakGLNNLAALLDNQG-KYYEAMPLYERALKIS 73
                 579************************9866666677766666*************.599***********97 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 2.1e-08
    PF13414.1  2 nAealkelGnalfkegdydeAieayekAleld.....pnnae...lyynlAl 45
                 +A+ l++l+  l ++g+y eA  +ye+Al+++     pn++     ++nlA+
  MMETSP0890-20130614|22479_1 42 LAKGLNNLAALLDNQGKYYEAMPLYERALKISeekfgPNHPLvatGLNNLAA 93
                 68889*************************9767777999888889999996 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   2.6e-09     2e-06       1      31 [.       1      31 [.       1      33 [. 0.91
   2 !   30.2   1.1   2.5e-10   1.9e-07       1      32 [.      43      74 ..      43      76 .. 0.94
   3 ?   -2.4   0.1       5.2   3.9e+03       2       8 ..      86      92 ..      85      93 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.6e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALeln 31
                 a +l+nl+ ++ ++g+ydeA   ye+A+ ++
  MMETSP0890-20130614|22479_1  1 ATTLNNLARLLGNQGEYDEAKPLYERAIGIR 31
                 5689***********************9776 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnP 32
                 ak l+nl++++ ++gky eA   ye+AL++ +
  MMETSP0890-20130614|22479_1 43 AKGLNNLAALLDNQGKYYEAMPLYERALKISE 74
                 799**************************975 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 5.2
                 HHHHHHH CS
   PF00515.23  2 kalynlG 8 
                   l+nl+
  MMETSP0890-20130614|22479_1 86 TGLNNLA 92
                 5789998 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.3e-09   1.7e-06       1      34 [.       3      36 ..       3      38 .. 0.90
   2 !   20.9   0.0   2.4e-07   0.00019       2      34 ..      46      78 ..      45      80 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 2.3e-09
    PF13176.1  1 allnLarlysrlgdyekAielyeraLaltkdpld 34
                 +l+nLarl  ++g+y++A  lyera+++++  l+
  MMETSP0890-20130614|22479_1  3 TLNNLARLLGNQGEYDEAKPLYERAIGIREKTLG 36
                 79**********************9998877665 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 2.4e-07
    PF13176.1  2 llnLarlysrlgdyekAielyeraLaltkdpld 34
                 l+nLa l  ++g+y +A  lyeraL++ ++ ++
  MMETSP0890-20130614|22479_1 46 LNNLAALLDNQGKYYEAMPLYERALKISEEKFG 78
                 89*********************8887776665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.9e-08   3.7e-05       2      28 ..       2      28 ..       1      33 [. 0.92
   2 !   23.9   0.7   2.7e-08   2.1e-05       1      32 [.      43      74 ..      43      76 .. 0.94

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.9e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                   l+nl++++ ++g+y+eA+ ++e+A+
  MMETSP0890-20130614|22479_1  2 TTLNNLARLLGNQGEYDEAKPLYERAI 28
                 679***********************8 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 2.7e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldP 32
                 a++l+nl+ ++ ++g+y eA  ++e+Al++  
  MMETSP0890-20130614|22479_1 43 AKGLNNLAALLDNQGKYYEAMPLYERALKISE 74
                 789**************************975 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.3e-07   0.00025       3      31 ..       3      31 ..       1      34 [. 0.91
   2 !   14.7   0.7   2.2e-05     0.016       2      32 ..      44      74 ..      43      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.3e-07
                 -TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeylekalelk 31
                 +++nl++++ + G+yd+Ak  +e+a+ + 
  MMETSP0890-20130614|22479_1  3 TLNNLARLLGNQGEYDEAKPLYERAIGIR 31
                 799**********************9875 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.2e-05
                 --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1  2 kayynlGdiYrqlGdydkAkeylekalelkp 32
                 k ++nl+ ++ + G+y +A+  +e+al+++ 
  MMETSP0890-20130614|22479_1 44 KGLNNLAALLDNQGKYYEAMPLYERALKISE 74
                 6799*************************96 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.9e-06    0.0015       3      38 ..       3      43 ..       1      47 [. 0.78
   2 !   14.7   0.1   4.3e-05     0.033       4      35 ..      46      82 ..      43      93 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-06
    PF13428.1  3 allalarallalGdpdeAiallrrala.....laPddaeal 38
                 +l  lar+l ++G++deA  l++ra+      l+P+++++ 
  MMETSP0890-20130614|22479_1  3 TLNNLARLLGNQGEYDEAKPLYERAIGirektLGPNHPDLA 43
                 5678*********************8533444677777765 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.3e-05
    PF13428.1  4 llalarallalGdpdeAiallrrala.....laPdda 35
                 l  la++l ++G + eA+ l++ral+      +P+++
  MMETSP0890-20130614|22479_1 46 LNNLAALLDNQGKYYEAMPLYERALKiseekFGPNHP 82
                 6789********************9844443345555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.8   4.9e-11   3.7e-08       2      59 ..       6      76 ..       5      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 4.9e-11
    PF13432.1  2 alArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal.....a 59
                  lAr+l ++G+ydeA +++e+a+           P+ a  l +la +l  +g++ eA  l+++al     +
  MMETSP0890-20130614|22479_1  6 NLARLLGNQGEYDEAKPLYERAIGIRektlgpnhPDLAKGLNNLAALLDNQGKYYEAMPLYERALkiseeK 76
                 58*****************************99999999999999999999*************9444444 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     5e-05     0.038      15      33 ..       3      21 ..       1      22 [. 0.91
   2 !   12.9   0.9   0.00011     0.087       9      32 ..      39      62 ..      23      63 .. 0.89
   3 ?    3.5   0.0      0.12        90       1      11 [.      65      75 ..      65      93 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5e-05
    PF13431.1 15 aynnLAelllnnGdleeAe 33
                  +nnLA+ll n+G+++eA+
  MMETSP0890-20130614|22479_1  3 TLNNLARLLGNQGEYDEAK 21
                 79***************97 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00011
    PF13431.1  9 dPnnadaynnLAelllnnGdleeA 32
                 +P+ a  +nnLA ll n+G++ eA
  MMETSP0890-20130614|22479_1 39 HPDLAKGLNNLAALLDNQGKYYEA 62
                 7999****************9766 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.12
    PF13431.1  1 lyekaleldPn 11
                 lye+al+++ +
  MMETSP0890-20130614|22479_1 65 LYERALKISEE 75
                 79****99844 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00058      0.44      15      34 ..      11      30 ..       1      35 [. 0.83
   2 !   11.5   0.2   0.00025      0.19       6      34 ..      44      72 ..      41      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00058
                 HHHTT-HHHHHHHHHHHHHH CS
   PF04212.13 15 aDeagkyeeAlelYkeAlel 34
                  +++g+y+eA  lY+ A+++
  MMETSP0890-20130614|22479_1 11 LGNQGEYDEAKPLYERAIGI 30
                 6899**************97 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF04212.13  6 lelikkAveaDeagkyeeAlelYkeAlel 34
                 + l + A   D++gky eA  lY+ Al++
  MMETSP0890-20130614|22479_1 44 KGLNNLAALLDNQGKYYEAMPLYERALKI 72
                 5566778889****************986 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.1e-05    0.0085       3      26 .]       3      26 ..       1      26 [. 0.89
   2 ?    3.6   0.0      0.14     1e+02       5      26 .]      47      68 ..      43      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.1e-05
                 HH---HHHHHH-------HHHHHT CS
    PF07721.9  3 allaLArallalGdldeAraller 26
                 +l +LAr+l  +G++deA  l er
  MMETSP0890-20130614|22479_1  3 TLNNLARLLGNQGEYDEAKPLYER 26
                 5679**************999987 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.14
                 ---HHHHHH-------HHHHHT CS
    PF07721.9  5 laLArallalGdldeAraller 26
                  +LA +l  +G + eA  l er
  MMETSP0890-20130614|22479_1 47 NNLAALLDNQGKYYEAMPLYER 68
                 58*********99999888776 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00029      0.22       5      27 ..       6      28 ..       6      29 .. 0.94
   2 !    7.3   0.1    0.0087       6.6       5      28 ..      48      71 ..      48      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerli 27
                 +la+++ ++g++deA+ ++er i
  MMETSP0890-20130614|22479_1  6 NLARLLGNQGEYDEAKPLYERAI 28
                 69******************987 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0087
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerlik 28
                 +la +++++g++ eA+ ++er +k
  MMETSP0890-20130614|22479_1 48 NLAALLDNQGKYYEAMPLYERALK 71
                 5788899999***********987 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0092         7      30      51 ..       6      33 ..       2      44 .. 0.67
   2 !   17.6   0.0   3.7e-06    0.0028       1      55 [.      13      74 ..      13      88 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0092
                 HHHHHHHH---HHHHHHHHHC......T CS
    PF12895.2 30 alAlclylngeykrAyellrk......l 51
                 +lA  l ++gey++A  l+++      +
  MMETSP0890-20130614|22479_1  6 NLARLLGNQGEYDEAKPLYERaigireK 33
                 4688888888888888887776444433 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 3.7e-06
                 HTT-HHHHHHHHHHHCCC-ST....-H.HHH.CHHHHHHHHHH---HHHHHHHHHC.TSHCH CS
    PF12895.2  1 eqhnyknAlflaekllaespk....dp.eda.ylyalAlclylngeykrAyellrk.lelds 55
                 +q++y++A  l+e+++    k    ++ + a  l +lA  l ++g+y++A+ l+++ l++++
  MMETSP0890-20130614|22479_1 13 NQGEYDEAKPLYERAIGIREKtlgpNHpDLAkGLNNLAALLDNQGKYYEAMPLYERaLKISE 74
                 6899**************9988876323444455557*****************98844443 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0066         5      13      33 ..      13      31 ..       2      52 .. 0.74
   2 !   10.4   0.0   0.00058      0.44       6      29 ..      48      71 ..      43      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0066
    PF12688.2 13 stGeeakAvplYrrAlaaGLa 33
                   Ge ++A plY+rA+  G++
  MMETSP0890-20130614|22479_1 13 NQGEYDEAKPLYERAI--GIR 31
                 57999*********96..555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00058
    PF12688.2  6 eragarDstGeeakAvplYrrAla 29
                 + a+  D  G+  +A+plY+rAl+
  MMETSP0890-20130614|22479_1 48 NLAALLDNQGKYYEAMPLYERALK 71
                 668899****************96 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.066        50      13      26 ..      13      24 ..       8      29 .. 0.88
   2 !   11.0   0.1   0.00034      0.26       7      32 ..      49      72 ..      44      76 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.066
                 HTT-HHHHHHH..H CS
    PF07720.7 13 nkkkyqeArelfsY 26
                 n+++y+eA  l  Y
  MMETSP0890-20130614|22479_1 13 NQGEYDEAKPL--Y 24
                 89******777..4 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00034
                 HHHHHHHTT-HHHHHHH..HHHHHHH CS
    PF07720.7  7 lAaefynkkkyqeArelfsYallail 32
                 lAa + n++ky+eA  l  Y+ + ++
  MMETSP0890-20130614|22479_1 49 LAALLDNQGKYYEAMPL--YERALKI 72
                 688888***********..8777666 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0096       7.3      42      77 ..       3      38 ..       1      44 [. 0.88
   2 ?    7.8   0.0    0.0016       1.2      41      78 ..      44      81 ..      38      91 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0096
    PF04910.9 42 tLlqlsevyreqgdfevAndlieraLfilervfhps 77
                 tL +l+ ++ +qg++ +A  l era+ i e+ + p+
  MMETSP0890-20130614|22479_1  3 TLNNLARLLGNQGEYDEAKPLYERAIGIREKTLGPN 38
                 999**********************98888887776 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0016
    PF04910.9 41 dtLlqlsevyreqgdfevAndlieraLfilervfhpsF 78
                  +L +l+ ++ +qg++ +A+ l eraL i e+ f p+ 
  MMETSP0890-20130614|22479_1 44 KGLNNLAALLDNQGKYYEAMPLYERALKISEEKFGPNH 81
                 68999**********************99999988875 PP

>> PF09141.5  Talin, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.3e-05     0.063      81     112 ..      26      57 ..      13      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.3e-05
    PF09141.5  81 davgaavstissnlpevskevkllaalleddt 112
                   a+g   +t++ n p+++k++  laall+++ 
  MMETSP0890-20130614|22479_1  26 RAIGIREKTLGPNHPDLAKGLNNLAALLDNQG 57 
                  5788888999********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.36u 0.48s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 375.43
//
Query:       MMETSP0890-20130614|22489_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.45s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1131.61
//
Query:       MMETSP0890-20130614|22488_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.7   0.9      0.013   13.3   0.6    1.1  1  PF05879.7 Root hair defective 3 GTP-binding protein (RHD3)


Domain annotation for each model (and alignments):
>> PF05879.7  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   9.7e-07     0.013     282     401 ..     255     376 ..     222     398 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.7e-07
    PF05879.7 282 keaaeaglleelgkklaslrekaleeydte..AsryekgvyeeKrqeLeekvdsklkalf.qavlealrkellekfkeavekalkagedFaesvkekkkklvekfdeeaeslvveqakwdasd 401
                   +  + + +e++ ++ + +  ++l+ +d +     +e + y++ r+eL +++++k+  +f +++l+ l +++ +++++ ++ +l + ++ ++++++   ++ + f e+a+++      w a +
  MMETSP0890-20130614|22488_1 255 IRRIDDKFCENYDEECSLAIGDVLDSFDDQlnTEIFETEAYTRARAELADSIKTKIDDTFlDQQLQLLAQSTAQHLRTGLK-NLRISQSMTKQTNALLADADTFFAEKAAKAFGTSRPWKAKQ 376
                  456667789999999999999*******9833568*********************9876378999999999999999999.99999****99999999999999999999988888888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.69
# Mc/sec: 1673.98
//
Query:       MMETSP0890-20130614|22497_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-15   55.5   0.3    5.6e-15   54.6   0.2    1.5  1  PF05920.6  Homeobox KN domain
    4.8e-07   29.1   0.2    1.3e-06   27.8   0.1    1.8  1  PF00046.24 Homeobox domain


Domain annotation for each model (and alignments):
>> PF05920.6  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.2   8.2e-19   5.6e-15       4      40 .]     103     139 ..      98     139 .. 0.95

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 8.2e-19
    PF05920.6   4 ahlhnPYPskevkeelakqTglsrkqidnWFiNaRrR 40 
                  +h+h+PYP++++  el++qTg + kq++nWF NaRrR
  MMETSP0890-20130614|22497_1 103 EHFHHPYPTAQDQAELMAQTGIDKKQLKNWFTNARRR 139
                  7***********************************9 PP

>> PF00046.24  Homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   1.9e-10   1.3e-06      22      54 ..     107     139 ..      82     142 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.9e-10
                  SSS--HHHHHHHHHH----HHHHHHHHHHHHHH CS
   PF00046.24  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  ++yp+a++ +eL +++g++++q k+WF N R +
  MMETSP0890-20130614|22497_1 107 HPYPTAQDQAELMAQTGIDKKQLKNWFTNARRR 139
                  89***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.59
# Mc/sec: 1133.19
//
Query:       MMETSP0890-20130614|22496_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-13   49.2   7.4    6.9e-13   48.4   3.3    2.3  2  PF05008.10 Vesicle transport v-SNARE protein N-terminus
    1.1e-09   38.1   7.5    5.6e-09   35.8   3.0    2.9  3  PF12352.3  Snare region anchored in the vesicle membrane C-terminus
    0.00056   19.4   1.9       0.02   14.4   0.1    3.0  3  PF03908.8  Sec20
     0.0056   16.4   8.9      0.083   12.6   0.4    3.1  3  PF06009.7  Laminin Domain II
  ------ inclusion threshold ------
      0.016   12.6   3.5       0.02   12.3   2.4    1.2  1  PF05478.6  Prominin
      0.068   12.3   1.8      0.079   12.1   0.3    1.7  2  PF08696.6  DNA replication factor Dna2
      0.075   12.8   0.5       0.15   11.9   0.1    1.7  1  PF09123.6  Domain of unknown function (DUF1931)
      0.076   12.9   6.9        2.8    7.8   2.2    2.2  2  PF07798.6  Protein of unknown function (DUF1640)
       0.19   12.0   5.0        0.3   11.3   0.1    2.6  2  PF13334.1  Domain of unknown function (DUF4094)
       0.48   10.6   5.9       0.15   12.2   1.5    2.1  2  PF06005.7  Protein of unknown function (DUF904)
       0.79    8.4   6.0        1.1    8.0   4.1    1.4  1  PF04111.7  Autophagy protein Apg6
       0.79    9.4   5.6        1.6    8.5   1.9    2.8  3  PF08340.6  Domain of unknown function (DUF1732)
       0.88    9.6   4.5        5.4    7.1   0.1    2.7  2  PF09969.4  Uncharacterized conserved protein (DUF2203)
        1.1    8.8  10.5      0.093   12.3   2.2    2.2  2  PF07926.7  TPR/MLP1/MLP2-like protein
        2.6    8.0   8.7        2.5    8.1   2.3    2.4  2  PF08702.5  Fibrinogen alpha/beta chain family
        3.7    7.8   9.0    1.8e+02    2.5   6.2    2.9  1  PF09177.6  Syntaxin 6, N-terminal
        4.1    7.7  11.2        1.1    9.6   1.4    3.4  4  PF05957.8  Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PF05008.10  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   3.3   8.6e-16   6.9e-13       1      78 [.      21     103 ..      21     104 .. 0.89
   2 ?    0.6   0.0       0.7   5.6e+02      22      45 ..     175     198 ..     158     205 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 8.6e-16
   PF05008.10   1 fkellaeikrklasls...klsge....erkaalreiekkldeaeellkqMelEvrnlpsserakykaklreykselkklkkelk 78 
                  f+++ +e+++kl+s+s   ++       ++++ l+eie  l++a +l+kqM++Evr++  s+r  ++++ r ++ elk+l++e++
  MMETSP0890-20130614|22496_1  21 FNQVADEVRQKLSSVSvysDN--PmhqsNKSEILNEIEDLLKQACDLVKQMDVEVRSADDSQRRILSERARPIREELKRLQNEYR 103
                  6778899*********66533..133459*****************************99***********************98 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.7
   PF05008.10  22 erkaalreiekkldeaeellkqMe 45 
                  + +  +++  + l  a+ l+ +M+
  MMETSP0890-20130614|22496_1 175 NIRGHISDTSNTLGTARTLIASMQ 198
                  566678888888888888888886 PP

>> PF12352.3  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.9   2.3e+03      37      52 ..      13      28 ..      11      34 .. 0.65
   2 ?    1.8   0.0      0.28   2.3e+02      35      54 ..      92     111 ..      92     120 .. 0.90
   3 !   35.8   3.0     7e-12   5.6e-09       2      65 ..     137     200 ..     136     201 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.9
    PF12352.3 37 tLkrarsklhnvanrl 52
                 ++++ +s +++va+++
  MMETSP0890-20130614|22496_1 13 MFGHYQSEFNQVADEV 28
                 5666777777776654 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.28
    PF12352.3  35 retLkrarsklhnvanrlgk 54 
                  re Lkr ++  +++++r+++
  MMETSP0890-20130614|22496_1  92 REELKRLQNEYRETNERIDR 111
                  899*************9986 PP

  == domain 3    score: 35.8 bits;  conditional E-value: 7e-12
    PF12352.3   2 rllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrR 65 
                  r  + ++ +k +  i+ et++ +  i ++L++ ret++++r  +++++n+lg++++++ s+++R
  MMETSP0890-20130614|22496_1 137 RARQQTQVIKGALEIAHETEQVALDITGELSRNRETISNIRGHISDTSNTLGTARTLIASMQKR 200
                  6679999*******************************************************99 PP

>> PF03908.8  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.088        71      42      63 ..      49      70 ..      15      86 .. 0.73
   2 ?   -0.9   0.0       1.5   1.2e+03      37      54 ..      94     111 ..      89     115 .. 0.83
   3 !   14.4   0.1   2.5e-05      0.02      18      80 ..     152     214 ..     136     225 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.088
    PF03908.8 42 eeeykqvedvlsrskklvkkle 63
                 +e + ++ed+l+++ +lvk+++
  MMETSP0890-20130614|22496_1 49 SEILNEIEDLLKQACDLVKQMD 70
                 4556788888999999998875 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.5
    PF03908.8  37 slekleeeykqvedvlsr 54 
                  +l++l++ey ++++ + r
  MMETSP0890-20130614|22496_1  94 ELKRLQNEYRETNERIDR 111
                  789999999999988876 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 2.5e-05
    PF03908.8  18 sqevqqSeenle.eldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglf 80 
                  ++e++q ++ +  el+ + +++ ++     +++++l +++ l+ ++++r+++ k ++  a++++
  MMETSP0890-20130614|22496_1 152 AHETEQVALDITgELSRNRETISNIRGHISDTSNTLGTARTLIASMQKREVQQKAILT-AVAII 214
                  55666666666448999999*********************************98764.33332 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.5      0.02        16      63     124 ..      20      82 ..      15      88 .. 0.79
   2 ?    3.4   0.1     0.067        54      16      47 ..      84     109 ..      73     115 .. 0.52
   3 !   12.6   0.4    0.0001     0.083       4      56 ..     144     196 ..     141     208 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.02
                  XXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXX-------B-------EEE CS
    PF06009.7  63 kleklapqlldkLkklkkleeasqsrv.lsrniseikelIaqARkaAnkIkvsvsfdgdsile 124
                  + ++ a+++ +kL+++   +++   +   s+ ++ei  l +qA +   +  v v++  ds ++
  MMETSP0890-20130614|22496_1  20 EFNQVADEVRQKLSSVSVYSDNPMHQSnKSEILNEIEDLLKQACDLVKQMDVEVRSADDSQRR 82 
                  568889999999999998888866555567778899999999999999999999988888776 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.067
                  XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7  16 lke.legistnventkaklsklngsveetnekv 47 
                  l+e   +i ++++++++++ ++n+        +
  MMETSP0890-20130614|22496_1  84 LSErARPIREELKRLQNEYRETNER-------I 109
                  4331345555555555555555544.......3 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 0.0001
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7   4 lakeAnetakeVlkelegistnventkaklsklngsveetnekvksankavrd 56 
                  ++k A+e+a e+++   +i  ++++ ++ +s+++g++  t + +  a + +++
  MMETSP0890-20130614|22496_1 144 VIKGALEIAHETEQVALDITGELSRNRETISNIRGHISDTSNTLGTARTLIAS 196
                  7899*******************************988888777766555544 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.4   2.5e-05      0.02     202     347 ..      18     162 ..       7     217 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.5e-05
    PF05478.6 202 aqnykelkdkvskdLdeagenlgkrikdelksevlpvLeevvelgqvlkemkeaLesvsktvkelkeegsq.lesglssvrrrlnellak.lCktq..eCakilsslsilald.adfsqlpdvteilenleevveadlskvvqeglstlee 347
                  +++++++ d+v ++L++++    +++++  kse+l+++e++++      ++++ +++++  v++  + + + l++  + +r++l+ l ++ + +++    + +l   si a +  +   ++d++e   + ++v++  l+ + + +   l+ 
  MMETSP0890-20130614|22496_1  18 QSEFNQVADEVRQKLSSVSVYSDNPMHQSNKSEILNEIEDLLK------QACDLVKQMDVEVRSADDSQRRiLSERARPIREELKRLQNEyRETNEriDREGLLGGISINANGaSHRGRMADANERARQQTQVIKGALEIAHETEQVALDI 162
                  567999*******************************999888......99**************99888747888999999999999984333335533333334444433344455666666666666666666666555555554443 PP

>> PF08696.6  DNA replication factor Dna2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   9.9e-05     0.079     127     189 ..      11      73 ..       3      78 .. 0.88
   2 ?   -1.7   0.0       1.6   1.3e+03      96     105 ..     151     160 ..     132     208 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.9e-05
    PF08696.6 127 leelyllglsadevkeeveeklpaieewaekyvkkspskesisesrekeketlsiskvldiEe 189
                  ++ + + + ++++v++ev++kl++++ + ++ +++s+++e  +e ++  k+++ ++k +d+E 
  MMETSP0890-20130614|22496_1  11 ISMFGHYQSEFNQVADEVRQKLSSVSVYSDNPMHQSNKSEILNEIEDLLKQACDLVKQMDVEV 73 
                  445566778899*******************************99****************95 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.6
    PF08696.6  96 ilHeifqeal 105
                  i He  q al
  MMETSP0890-20130614|22496_1 151 IAHETEQVAL 160
                  4444444444 PP

>> PF09123.6  Domain of unknown function (DUF1931)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00018      0.15      19     108 ..      53     167 ..      45     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
                  HHHHHHHHHH..---TT---HHHHHH----B--GGGS---HHHHHHHHHHHT--S----HHHHHHHT.......................---S-SSB---TTGGGHHHH----H CS
    PF09123.6  19 erisdvVekk..lydLllvaqenAkangrdviepadlpiTkgleesineFrkleeeielkpileyla.......................alpPldlelseeleaklpeivGgls 108
                  ++i+d+++++  l + + v  ++A   +r + +++  pi ++l++  ne+r+ +e+i  + +l  +                        + +   le+++e+e+   +i+G ls
  MMETSP0890-20130614|22496_1  53 NEIEDLLKQAcdLVKQMDVEVRSADDSQRRILSERARPIREELKRLQNEYRETNERIDREGLLGGISinangashrgrmadanerarqqtQVIKGALEIAHETEQVALDITGELS 167
                  5566666654113344667889*****************************************9999899998766666666666666655555566666666666666666554 PP

>> PF07798.6  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.2    0.0035       2.8      61     139 ..      22     112 ..       5     114 .. 0.74
   2 ?    6.8   0.1    0.0068       5.4      78     138 ..     131     189 ..     120     223 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0035
    PF07798.6  61 aklkselvs............leksefsnlqaeneklksdleklknkLrdeinkvraevrLDlnLEksr.ireelaeqekkiketntkidte 139
                  +++ +e+ +            +++s+ s + +e e l ++   l +++  e+  +  ++r  l+ E+ r ireel+  +++++etn++id+e
  MMETSP0890-20130614|22496_1  22 NQVADEVRQklssvsvysdnpMHQSNKSEILNEIEDLLKQACDLVKQMDVEVRSADDSQRRILS-ERARpIREELKRLQNEYRETNERIDRE 112
                  4444444423333444445556677777788888999999999999999999999999998888.666559*******************98 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0068
    PF07798.6  78 lqaeneklksdleklknkLrdeinkvraevrLDlnLEksrireelaeqekkiketntkidt 138
                  +   ne+ +++ + +k  L  ei   + +v LD+  E sr re  ++ +  i++t++ + t
  MMETSP0890-20130614|22496_1 131 MADANERARQQTQVIKGAL--EIAHETEQVALDITGELSRNRETISNIRGHISDTSNTLGT 189
                  5666777777777777776..67777778889*******************9999998865 PP

>> PF13334.1  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4      0.39   3.1e+02      40      81 ..      28      68 ..      13      73 .. 0.64
   2 ?   11.3   0.1   0.00037       0.3      33      94 ..     131     192 ..     121     193 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.39
    PF13334.1 40 aeeelqlvsedcdkkkkkesdqkdilgeVsktheaiqsLdkt 81
                   ++l++vs   d+   ++s++ +il+e+++ +++  +L k+
  MMETSP0890-20130614|22496_1 28 VRQKLSSVSVYSDNP-MHQSNKSEILNEIEDLLKQACDLVKQ 68
                 334555554444333.47889999999999988777666665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00037
    PF13334.1  33 qlissqeaeeelqlvsedcdkkkkkesdqkdilgeVsktheaiqsLdktIssLemeLAaars 94 
                     ++++a +++q+++  ++ + ++e+ + di+ge s+ +e+i ++   Is     L +ar+
  MMETSP0890-20130614|22496_1 131 MADANERARQQTQVIKGALEIAHETEQVALDITGELSRNRETISNIRGHISDTSNTLGTART 192
                  456778999********99999999****************************999999996 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.5   0.00019      0.15       3      63 ..      49     110 ..      47     119 .. 0.83
   2 ?   -1.6   0.1       3.7     3e+03      39      59 ..     126     146 ..     121     158 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH---TTHHH CS
    PF06005.7   3 lelleeLeskiqqAvdtialLqmeieeLkeen.eqlkeeneeLeeenkklkeereawqerlr 63 
                   e+l+e e   +qA d ++    e+    + +   l+e  + ++ee k+l++e+ + +er++
  MMETSP0890-20130614|22496_1  49 SEILNEIEDLLKQACDLVKQMDVEVRSADDSQrRILSERARPIREELKRLQNEYRETNERID 110
                  68999999999*****999999999877664304466999********************97 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 3.7
                  HHHHHHHHHHHHHHHHH---T CS
    PF06005.7  39 eeneeLeeenkklkeereawq 59 
                  +++  +   n++ +++ + ++
  MMETSP0890-20130614|22496_1 126 SHRGRMADANERARQQTQVIK 146
                  556667778888888877665 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1    0.0013       1.1      32     127 ..      15     112 ..       8     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0013
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
    PF04111.7  32 eeldkelraaeeekdvYkqylekLesqnkeeenvealdseldeLkkeeerlleele.elekeedkldeeleelq.eekekleeeeeqylrelnkfklk 127
                   + ++e++++ +e  +     +  ++   +++n ++  +e+++L k+   l+++++ e+++ +d+    l e     +e+l+  +++y +  ++++++
  MMETSP0890-20130614|22496_1  15 GHYQSEFNQVADEVRQKLSSVSVYSDNPMHQSNKSEILNEIEDLLKQACDLVKQMDvEVRSADDSQRRILSERArPIREELKRLQNEYRETNERIDRE 112
                  56678999999999999999999999999**********************99996467776666555554432034555555555555555555554 PP

>> PF08340.6  Domain of unknown function (DUF1732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.7   3.8e+03      12      32 ..       6      26 ..       5      33 .. 0.70
   2 ?    8.5   1.9    0.0019       1.6      12      86 ..      90     176 ..      80     177 .. 0.79
   3 ?    4.5   0.1     0.034        27      67      86 ..     157     176 ..     150     209 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.7
    PF08340.6 12 disEElsRLksHleelrelle 32
                  ++EE+s +    +e++++ +
  MMETSP0890-20130614|22496_1  6 TVTEEISMFGHYQSEFNQVAD 26
                 588998888777777776654 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0019
    PF08340.6  12 disEElsRLksHleelrelleeee............eavGrkLdFllqElnREanTlgsKan..dleitelvvelkveiekireqvqNi 86 
                   i+EEl+RL++  +e++e +++e+            ++ Gr  d  + E  R  + +   a   ++e++++++++  e+ + re + Ni
  MMETSP0890-20130614|22496_1  90 PIREELKRLQNEYRETNERIDREGllggisinangaSHRGRMAD--ANERARQQTQVIKGALeiAHETEQVALDITGELSRNRETISNI 176
                  599*****************988566666666666578999999..78888987776554432278999999**************998 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.034
    PF08340.6  67 elvvelkveiekireqvqNi 86 
                  ++++++  e+ + re + Ni
  MMETSP0890-20130614|22496_1 157 QVALDITGELSRNRETISNI 176
                  55555555555555555554 PP

>> PF09969.4  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0067       5.4      23      77 ..      15      77 ..       3      80 .. 0.62
   2 ?    2.8   0.5      0.14   1.1e+02      23      59 ..      89     145 ..      80     215 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0067
    PF09969.4 23 kelkaeleeleealeeaekel.......eaeelkeel.eeleeqiraaieeieelGvevkdld 77
                  + ++e++++ ++++++ +++        ++++k+e+ +e+e+ +++a++ ++++ vev+++d
  MMETSP0890-20130614|22496_1 15 GHYQSEFNQVADEVRQKLSSVsvysdnpMHQSNKSEIlNEIEDLLKQACDLVKQMDVEVRSAD 77
                 44444444443333333333355555554455555544999999***************9987 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.14
    PF09969.4  23 kelkaeleeleealeeaekel....................eaeelkeeleeleeqi 59 
                  + +++el++l+++++e+++++                    ++++ +e++++ ++ i
  MMETSP0890-20130614|22496_1  89 RPIREELKRLQNEYRETNERIdregllggisinangashrgRMADANERARQQTQVI 145
                  555556666655555555555555555666655554433332222222222222222 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.2   0.00012     0.093      22     115 ..      17     110 ..       8     111 .. 0.81
   2 ?    0.7   0.6      0.45   3.6e+02      21      76 ..     137     195 ..     126     210 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00012
    PF07926.7  22 ieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeLtkl.kkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkie 115
                  ++++++++ d+++++ +++    d+       ++e  +e+++l k++++++++   e+r+  ds+++ l+e  + + ee ++L++e +e +++i+
  MMETSP0890-20130614|22496_1  17 YQSEFNQVADEVRQKLSSVSVYSDN-PMHQSNKSEILNEIEDLlKQACDLVKQMDVEVRSADDSQRRILSERARPIREELKRLQNEYRETNERID 110
                  6777777777777777777777777.3333556888888888526777777777789************************************97 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.45
    PF07926.7  21 aieeqiqklkdDlenqaeiareaqdkYerelikhaetiqeL....tklkkelaelqkeas 76 
                  ++++q q +k  le  +e+ + a d    el ++ eti ++    +++++ l  +++ ++
  MMETSP0890-20130614|22496_1 137 RARQQTQVIKGALEIAHETEQVALDI-TGELSRNRETISNIrghiSDTSNTLGTARTLIA 195
                  45555555555555555554444444.445555555544431000233333333333333 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.3    0.0031       2.5      29     121 ..      16     110 ..      10     112 .. 0.73
   2 ?    1.9   0.1      0.24   1.9e+02      35      69 ..     170     204 ..     165     210 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0031
                  CCCCCCCHHHCCHCCCCHHHH......CHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  29 kyekdvdkkieklenlLeqla......nktkeieelvksikeslkekqkqakdndniesavskslekkiililekkilaqesqirvLqevlrsneskiq 121
                   y+ ++++  ++++++L +++        +++  e+ ++i++ lk++ +  k+ d  + +  +s +++i   l ++   + ++++ Lq+ +r+ +++i 
  MMETSP0890-20130614|22496_1  16 HYQSEFNQVADEVRQKLSSVSvysdnpMHQSNKSEILNEIEDLLKQACDLVKQMDVEVRSADDS-QRRI---LSERARPIREELKRLQNEYRETNERID 110
                  6777888888888888877762222112334455677889999999999999888888888888.7766...788888999999999999999998886 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.24
                  CHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCC CS
    PF08702.5  35 dkkieklenlLeqlanktkeieelvksikeslkek 69 
                  +++i++++  + + +n+  +++ l+ s+++   ++
  MMETSP0890-20130614|22496_1 170 RETISNIRGHISDTSNTLGTARTLIASMQKREVQQ 204
                  578999****************9999999875544 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   6.2      0.22   1.8e+02       3      82 ..      21      87 ..      16     207 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.22
    PF09177.6  3 Ffevkeevqksidkleslyrsweelrsdst...sskelkeltkeLenalesiewdledLeeavsvveknpekfglseeeisrR 82
                 F++v++ev+++++++              +   +++ +++ ++e+ n++e++ ++  dL + ++v e  ++    +++ +s+R
  MMETSP0890-20130614|22496_1 21 FNQVADEVRQKLSSV--------------SvysDNPMHQSNKSEILNEIEDLLKQACDLVKQMDV-EVRSAD-DSQRRILSER 87
                 444444444444444..............334345556666667777777777777777777666.222222.2344444444 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.7   1.4e+03      44      61 ..      18      35 ..      12      46 .. 0.55
   2 ?    9.6   1.4    0.0014       1.1       2      57 ..      50     105 ..      49     112 .. 0.92
   3 ?    1.5   0.4      0.45   3.6e+02      44      61 ..     128     145 ..     120     165 .. 0.52
   4 ?   -0.3   0.0       1.6   1.3e+03      27      50 ..     171     183 ..     149     215 .. 0.51

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.7
    PF05957.8 44 rerlrdaedavrerakea 61
                 ++++++++d+vr++ +++
  MMETSP0890-20130614|22496_1 18 QSEFNQVADEVRQKLSSV 35
                 444444444444444444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0014
    PF05957.8   2 eleaeletlladleellksaadeageeaeelReraeealerarerlrdaedavrer 57 
                  e+ +e+e+ll+++ +l+k+   e ++  ++ R+ ++e+++  re+l+++++++re 
  MMETSP0890-20130614|22496_1  50 EILNEIEDLLKQACDLVKQMDVEVRSADDSQRRILSERARPIREELKRLQNEYRET 105
                  6889**********************************************999886 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.45
    PF05957.8  44 rerlrdaedavrerakea 61 
                  r r++da +++r++++ +
  MMETSP0890-20130614|22496_1 128 RGRMADANERARQQTQVI 145
                  334444444444443322 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 1.6
    PF05957.8  27 eeaeelReraeealerarerlrda 50 
                  e+++++R ++++           +
  MMETSP0890-20130614|22496_1 171 ETISNIRGHISD-----------T 183
                  233333333322...........2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1261  (0.0922323); expected 273.4 (0.02)
Passed bias filter:                      742  (0.0542715); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:01.25
# Mc/sec: 437.10
//
Query:       MMETSP0890-20130614|22512_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 320.87
//
Query:       MMETSP0890-20130614|22559_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-06   26.7   0.0    3.7e-06   26.5   0.0    1.1  1  PF00589.17 Phage integrase family


Domain annotation for each model (and alignments):
>> PF00589.17  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.7e-10   3.7e-06      94     172 ..      60     141 ..      32     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.7e-10
                  TSBSS-EBSSS---HHHH---HHHHHHH----...SS----TTT---HHHHHH----HHHHHH-----SSHHHHHHCTTSGG CS
   PF00589.17  94 rellfvskrgkplsdstvnrafkravkeagie...keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthvake 172
                  r++ + + +g+pl +  + r ++ ++    +     + +pH++R  +a  ll sG +++ +q ll ++s++++ +Y++ ++e
  MMETSP0890-20130614|22559_1  60 RQTPLFTVAGEPLRHDVIDRVLHDLLLPIMTPeraSQYSPHSFRIGLACTLLASGEPPHMIQMLLRWKSTESMVAYARFNPE 141
                  44433355688888888888888888885555566899***************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 587.86
//
Query:       MMETSP0890-20130614|22563_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-12   46.0   0.1    7.1e-12   44.9   0.1    1.5  1  PF01799.15 [2Fe-2S] binding domain
    3.4e-07   29.8   3.8    2.1e-05   24.0   0.7    2.3  2  PF00111.22 2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF01799.15  [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1     1e-15   7.1e-12       2      53 ..     100     150 ..      99     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1e-15
                  ------TTS--HHHHHHHHTT-----------HHHHHHHCCC-SS--HHHHH CS
   PF01799.15   2 vEglaeeeelhpvqqafveegalQCGyCtpGfvmsaaalleenpepteeeir 53 
                    gl++  + ++vqqa+++++++QCG+C++G+v++++  le+ p+ + ++i+
  MMETSP0890-20130614|22563_1 100 NQGLGTPIAPSKVQQALIDCDGSQCGFCSSGMVTALTYALEQ-PNVSAQDIE 150
                  5788999999*******************************5.666555554 PP

>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.7   3.1e-09   2.1e-05       2      48 ..      26      73 ..      25      94 .. 0.81
   2 !    6.5   0.1   0.00092       6.3      34      44 ..     118     128 ..     111     154 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.1e-09
                 EESS-EEEEEEEETTCBHHHHHHH.T-TTTGTTSS----SSTTEEEEE CS
   PF00111.22  2 tidgkevevevadgettlldaaee.nggidipysCggggCgtClvevn 48
                 +++g e+ v+   +  tl ++++e    +++++sC++ggCg+C v + 
  MMETSP0890-20130614|22563_1 26 KVNGHERIVVLGGQNITLAEYLREyEYLTGVKLSCQEGGCGVCQVLLS 73
                 68999999988888889******9988*****************9755 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00092
                  SS----SSTTE CS
   PF00111.22  34 sCggggCgtCl 44 
                  +C g++Cg C 
  MMETSP0890-20130614|22563_1 118 DCDGSQCGFCS 128
                  8*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.51
# Mc/sec: 784.69
//
Query:       MMETSP0890-20130614|22567_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   13.9   0.1      0.046   12.8   0.1    1.5  1  PF00731.15 AIR carboxylase
        0.1   12.3   1.1       0.21   11.3   0.2    1.8  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.11   12.3   0.5       0.46   10.3   0.1    2.1  3  PF11083.3  Lantibiotic streptin immunity protein
       0.57    9.3   4.1       0.31   10.2   1.5    1.5  2  PF10422.4  Monopolin complex subunit LRS4


Domain annotation for each model (and alignments):
>> PF00731.15  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.4e-05     0.046      12      53 ..     185     226 ..     181     230 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
                  GHHHHHHHHHHHHHTT-EEEEEE--TTT-HHHHHHHHHHCCT CS
   PF00731.15  12 DlevmeeaakvlkelgieyevkvvSaHrtperlleyakeaee 53 
                  D+  meeaakv+++++ +++++++  H+ +erl ++++++++
  MMETSP0890-20130614|22567_1 185 DVALMEEAAKVIRQVQETINLRIITYHKFAERLDRTVSSMSN 226
                  899******************************999988765 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   6.1e-05      0.21      36      83 ..       6      57 ..       3      61 .. 0.77
   2 ?   -2.1   0.0      0.81   2.8e+03      75      86 ..     195     206 ..     184     228 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.1e-05
    PF04513.7 36 latlldaietqLnalsedlksllaeldt....rldtlltnLtdalnalqdtl 83
                 ++ +  +ie +L++++ d+ +l +++ +    rl +++++L +  n+++d++
  MMETSP0890-20130614|22567_1  6 VKDIQSEIEASLGDIQRDFDRLTTQQGAdimdRLRDTVSKLVSNCNQVADDV 57
                 5667778888888899888888876655666699999999999999999776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.81
    PF04513.7  75 alnalqdtlrne 86 
                   + ++q+t++ +
  MMETSP0890-20130614|22567_1 195 VIRQVQETINLR 206
                  333333333333 PP

>> PF11083.3  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.59     2e+03      63      68 ..      19      24 ..       3      57 .. 0.50
   2 ?   -2.2   0.0       1.1   3.8e+03      15      30 ..      47      62 ..      31      67 .. 0.62
   3 ?   10.3   0.1   0.00013      0.46      54      93 ..     189     228 ..     185     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.59
    PF11083.3 63 klqeel 68
                  +q+++
  MMETSP0890-20130614|22567_1 19 DIQRDF 24
                 222222 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.1
    PF11083.3 15 iatLNkvAEvlinlks 30
                 ++  N+vA+ +++  +
  MMETSP0890-20130614|22567_1 47 VSNCNQVADDVLQYAA 62
                 4566888887776555 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00013
    PF11083.3  54 leqvekeikklqeelekeldeYEklvrrLekfvkvlnisk 93 
                  +e+  k i+++qe +++ +  Y k + rL++ v+ ++  +
  MMETSP0890-20130614|22567_1 189 MEEAAKVIRQVQETINLRIITYHKFAERLDRTVSSMSNAN 228
                  5777889**************************9998333 PP

>> PF10422.4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.5   5.1e+03     198     214 ..      36      52 ..      33      69 .. 0.73
   2 ?   10.2   1.5   9.2e-05      0.31     199     231 ..     215     246 ..     200     255 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.5
                  XXXXXXXXXXXXXXXXX CS
    PF10422.4 198 lkhgddTifdnvsdind 214
                  +++++dT+   vs+ n+
  MMETSP0890-20130614|22567_1  36 MDRLRDTVSKLVSNCNQ 52 
                  67888888887877764 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 9.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF10422.4 199 khgddTifdnvsdindddtdedsessflletiq 231
                  +++d T+  ++s+ nddd+d+d+++  +l+t  
  MMETSP0890-20130614|22567_1 215 ERLDRTVS-SMSNANDDDDDDDDDEESGLKTNT 246
                  67888987.5********999999999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      599  (0.0438122); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.88
# Mc/sec: 697.12
//
Query:       MMETSP0890-20130614|22582_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-12   44.2   0.1    2.2e-11   43.1   0.1    1.5  1  PF00194.16 Eukaryotic-type carbonic anhydrase


Domain annotation for each model (and alignments):
>> PF00194.16  Eukaryotic-type carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.1   1.6e-15   2.2e-11     192     255 ..       2      56 ..       1      57 [. 0.91

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.6e-15
                  ---SSTT--S--EEEEESS-EE--HHHHHHHTTSBSS-TTS---B--------B--TT--EEES CS
   PF00194.16 192 GslttPpleEsvtWivlkepikvsseqllklrslllsaegeeevelvdnyRplqpLkdRvvras 255
                  GslttPp++E v W+v+++p ++s++q++ +++ +  +         + yRp+qpL++R+v +s
  MMETSP0890-20130614|22582_1   2 GSLTTPPCSEVVEWFVMATPSTISPSQVAYFKEIFPGV---------SSYRPIQPLNGRNVLKS 56 
                  9******************************9877554.........48***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.71
# Mc/sec: 256.51
//
Query:       MMETSP0890-20130614|22576_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-20   71.7   1.6    1.1e-19   70.8   1.1    1.4  1  PF13621.1  Cupin-like domain
     0.0002   20.6   0.0    0.00035   19.8   0.0    1.4  1  PF08007.7  Cupin superfamily protein
     0.0058   16.7   0.0      0.014   15.5   0.0    1.6  1  PF02373.17 JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   1.1   2.4e-23   1.1e-19       5     231 ..     114     371 ..     110     384 .. 0.71

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 2.4e-23
    PF13621.1   5 freyvakrrPviikgalkdwpalqkwkdeylleylkekygdvkvevektpdgvadsf.........................................eenedlkkvkfseekmtfkdfldkleagedkrseeylylqnsnlaeefpelredsdlpfapelfgkkpeavnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvaslee.sgtsvssvdvenpdlekfprfkdakalevelepGevLYlPalWfHeVsss 231
                   +ey + + P+++ ++ +  ++ +kw+d    +yl +++ +++ +  k + +++++f                                         + +++ ++      +m++ ++  + ++ +++++++y    n++l+  +p+ ++     f +++    ++ ++ ++G ++ +   H+D   N+ ++++G Kr +L pp+   +l++ ++++  +  +s+ d+   +++  +++++a+a+++ l++Ge+LY+P+ W H++ s+
  MMETSP0890-20130614|22576_1 114 AEEYRNAEVPFKLYDIPNIEQVRKKWND----AYLVDVMDHRRGTQFKIERSKNNHFmywqhkqnmpakykdwippteiitgvhfaqwldwahtadaeQIESEATHHYLMLGTMPLTQLHASHSSFRPRENNKYRHFVNNDLSIFTPDTENF----FITNIAA--NKGIQCRFGMRGVIAEAHYDGGRNMVAMLKGAKRYILSPPTSCSNLKIIPDRRhPSFRHSTTDWSH-QNQADTQLNQAHAIDTVLREGEILYIPSYWIHYIVSL 371
                  5899999********************8....777777777777777777778888866666666666666666666666666666666555554433222223333333455555555555555555555555555555555544444442....2232322..467889********************************************8888666788888776.6789999***************************998 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.6e-08   0.00035     161     202 ..     335     374 ..     286     389 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 7.6e-08
                  -EE--TTT--..--SEEEEE----EEEE----EEEEE---.- CS
    PF08007.7 161 kseeplkildefepvedfvLepGDlLYlPrgviHqgvaedes 202
                  +++++++  +  ++ +d+vL+ G +LY+P+ +iH+ v++  s
  MMETSP0890-20130614|22576_1 335 QNQADTQLNQ--AHAIDTVLREGEILYIPSYWIHYIVSLRYS 374
                  3333333333..7789*******************9887644 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     3e-06     0.014      56     111 ..     321     378 ..     274     380 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3e-06
                  --TTGHHCCHCCCHHHH..HHHCCG--EEEEE----EEEE----EEEEEEEEEEEEEE CS
   PF02373.17  56 eqpdllrhlstlispkq..lekagipvyrfvqkpgefVfvfpgayHsvfnlgfniaea 111
                  ++p++ +  ++  + +q   + ++   + +v ++ge+++++++++H  ++l ++i+ +
  MMETSP0890-20130614|22576_1 321 RHPSFRHSTTDWSHQNQadTQLNQAHAIDTVLREGEILYIPSYWIHYIVSLRYSIQCN 378
                  35664444444444444776667789999**********************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:01.11
# Mc/sec: 924.00
//
Query:       MMETSP0890-20130614|22608_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.42s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 202.77
//
Query:       MMETSP0890-20130614|22625_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 1125.56
//
Query:       MMETSP0890-20130614|22647_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.3   1.5      0.026   14.3   1.0    1.1  1  PF06382.6 Protein of unknown function (DUF1074)
       0.13   11.8   1.0       0.13   11.8   0.7    1.0  1  PF03792.8 PBC domain
       0.22   11.2   2.1       0.26   11.0   1.4    1.2  1  PF10506.4 PDZ domain of MCC-2 bdg protein for Usher syndrome


Domain annotation for each model (and alignments):
>> PF06382.6  Protein of unknown function (DUF1074)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.0   5.8e-06     0.026     107     130 ..       9      32 ..       3      42 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.8e-06
    PF06382.6 107 akaakqWtqlseaekeafkskkps 130
                  a aak+  q s aekea+++k+  
  MMETSP0890-20130614|22647_1   9 AEAAKAAKQYSAAEKEAYRRKRRK 32 
                  579*****************9865 PP

>> PF03792.8  PBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   2.8e-05      0.13      91     124 ..       7      40 ..       2      44 .] 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.8e-05
    PF03792.8  91 slaaeaaaagadnsiehsdYrakLsqirqiyhae 124
                  + a++a aa + +++e+  Yr k  ++r++++++
  MMETSP0890-20130614|22647_1   7 QEAEAAKAAKQYSAAEKEAYRRKRRKVRRLWNQD 40 
                  333444444458999***************9986 PP

>> PF10506.4  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   5.7e-05      0.26      41      60 ..       8      27 ..       1      29 [. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.7e-05
    PF10506.4 41 navAlrLalqyservkelys 60
                 +a A+++a+qys   ke+y 
  MMETSP0890-20130614|22647_1  8 EAEAAKAAKQYSAAEKEAYR 27
                 788***********9*9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1026  (0.0750439); expected 273.4 (0.02)
Passed bias filter:                      739  (0.0540521); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 172.85
//
Query:       MMETSP0890-20130614|22654_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-05   23.3   1.2       0.19   10.9   0.1    3.1  3  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.18   11.5   0.0    1.2  1  PF03004.9  Plant transposase (Ptta/En/Spm family)


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   2.8e-05      0.19      13      30 ..      31      48 ..      26      53 .. 0.89
   2 ?    0.9   0.0     0.035   2.4e+02      12      25 ..      67      80 ..      58      87 .. 0.79
   3 !    9.0   0.1   0.00011      0.72      41      60 ..      85     104 ..      67     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.8e-05
                 CTTSBHHHHHHHHHHHHT CS
   PF00240.18 13 epsdtvselKekieekeg 30
                 +p+++v+elK+ i+ek++
  MMETSP0890-20130614|22654_1 31 KPQTSVKELKQLIHEKQK 48
                 799*************98 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.035
                 ECTTSBHHHHHHHH CS
   PF00240.18 12 vepsdtvselKeki 25
                 v+p+d+++ +K+  
  MMETSP0890-20130614|22654_1 67 VPPKDQILVVKNDH 80
                 899999*9999865 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00011
                  ---BETTTSBTTTTTT-TTE CS
   PF00240.18  41 sGkvLeDdrtlseyniqdgs 60 
                  + ++LeDd +ls y+++d+ 
  MMETSP0890-20130614|22654_1  85 HQMLLEDDLPLSTYGVDDRL 104
                  55789************987 PP

>> PF03004.9  Plant transposase (Ptta/En/Spm family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.6e-05      0.18      81     132 ..      33      84 ..      23      92 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.6e-05
    PF03004.9  81 eeiaekvkerlqeresesesetsaesdgssrl..iedkneiflqvvgkdkkgrv 132
                  +  ++++k++++e+++ +++++ a+s++s+++  +  k++i   vv+ d+ +r 
  MMETSP0890-20130614|22654_1  33 QTSVKELKQLIHEKQKLLSTGEVARSSSSESCviVPPKDQIL--VVKNDHDRRF 84 
                  66799*********************9999999999999999..8888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.68
# Mc/sec: 553.28
//
Query:       MMETSP0890-20130614|22664_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-16   58.3   0.0      1e-15   57.4   0.0    1.4  1  PF02204.13 Vacuolar sorting protein 9 (VPS9) domain


Domain annotation for each model (and alignments):
>> PF02204.13  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   7.7e-20     1e-15       1     101 [.     111     236 ..     111     238 .. 0.97

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 7.7e-20
   PF02204.13   1 lekaseeLkklneakspreKlncivrackeitsav.........................sssskgeslgaDdlLPiliyvviksnppnllsnvqyiqefrskkllsgeegYylttlqaavefien 101
                  +++a+  L+ l+    p +Kl ++ ++ kei +                            ++++++ l aDd+LPi+iyv ++++ +++l+   +++ + ++k+l+ge gY+lt ++aa+e++++
  MMETSP0890-20130614|22664_1 111 WTRAIFSLSTLDDKALPLHKLATLTATAKEIHDEHkklldafthvaslkycqqaekdfymTKKKPPSFLAADDFLPIFIYVFVQAELHSPLQARTLLWALANPKHLRGESGYFLTMFDAAIEYVQS 236
                  889999**************************999999*********************999*************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 1125.91
//
Query:       MMETSP0890-20130614|22667_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   15.8   0.0      0.015   15.0   0.0    1.5  1  PF13180.1 PDZ domain


Domain annotation for each model (and alignments):
>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-06     0.015      14      38 ..     115     139 ..      71     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-06
    PF13180.1  14 rgvlvvsVkessPaakaglkpGDii 38 
                  +++ v++V ++s a+kag+ pGDi+
  MMETSP0890-20130614|22667_1 115 GKIEVIEVSSDSNAEKAGILPGDIL 139
                  6799*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.59
# Mc/sec: 869.19
//
Query:       MMETSP0890-20130614|22680_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   13.0   1.4      0.032   13.0   1.0    1.1  1  PF07586.6  Protein of unknown function (DUF1552)
      0.032   13.6   0.2      0.037   13.5   0.1    1.0  1  PF00489.12 Interleukin-6/G-CSF/MGF family
        0.1   11.5   3.1        0.1   11.5   2.1    1.0  1  PF11262.3  Transcription factor/nuclear export subunit protein 2
       0.19   11.0   5.0       0.26   10.5   3.5    1.4  1  PF13093.1  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
       0.24   11.7   3.5       0.19   12.0   1.5    1.5  1  PF14357.1  Domain of unknown function (DUF4404)
       0.32   10.9   3.1       0.34   10.9   2.2    1.0  1  PF11315.3  Mediator complex subunit 30
        1.9    6.8   3.6        2.2    6.6   2.5    1.0  1  PF04791.11 LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> PF07586.6  Protein of unknown function (DUF1552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   1.7e-05     0.032     173     218 ..       7      52 ..       2      78 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
    PF07586.6 173 slrrklgkedrakLdeYltsvrelekrlekaeawldaepkakPkap 218
                   ++ k + e+r+++ e++  +r+l k l++ e   ++++      +
  MMETSP0890-20130614|22680_1   7 TYSEKSSDEERERYNEHFRRLRRLTKTLKQIETAREKNKDRTTSIE 52 
                  56788999********************777777755433222222 PP

>> PF00489.12  Interleukin-6/G-CSF/MGF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.9e-05     0.037      78     132 ..      18      72 ..       9      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.9e-05
                  TT---HHHHHHHHHHHHHHHHHHHHHH....-----SS-----------SHHHHH CS
   PF00489.12  78 eenkekvetlqldvktliqilkqkvkdldkvlvpaPatqatlsaklqsqseflrr 132
                  e  +e+ + l++ +ktl qi   + k++d+ +  +P   a+l  ++q ++e + +
  MMETSP0890-20130614|22680_1  18 ERYNEHFRRLRRLTKTLKQIETAREKNKDRTTSIEPELSAKLARQPQIEHEIQIT 72 
                  566789999***************************************9998855 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.1   5.3e-05       0.1      39      89 ..      11      61 ..       2      80 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-05
    PF11262.3 39 eikeskkakiekkkrelkriknrikkLeeekkehiehtekiksrLkeekks 89
                 + +  ++++++++ r+l+r++++ k++e+ +++++ +t +i+  L+ ++ +
  MMETSP0890-20130614|22680_1 11 KSSDEERERYNEHFRRLRRLTKTLKQIETAREKNKDRTTSIEPELSAKLAR 61
                 3333578899***********************************999876 PP

>> PF13093.1  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.5   0.00014      0.26     132     177 ..       8      53 ..       1      82 [. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
    PF13093.1 132 snasaspeeaerYdelrerLielskerqqkqerlaqlrqLkellep 177
                   ++++s+ee+erY+e + rL  l k+++q +   ++ ++  +++ep
  MMETSP0890-20130614|22680_1   8 YSEKSSDEERERYNEHFRRLRRLTKTLKQIETAREKNKDRTTSIEP 53 
                  4577899999999999999999999988866555544444444444 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   9.5e-05      0.19       5      50 ..      26      70 ..      21      83 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.5e-05
    PF14357.1  5 lLekLheeLeqtdsldeetraeLkelrddieealeeedaseaedes 50
                  L++L + L+q +++ e+ +++ ++++ +++++l+++ +  +++ +
  MMETSP0890-20130614|22680_1 26 RLRRLTKTLKQIETAREKNKDRTTSIEPELSAKLARQPQI-EHEIQ 70
                 6999********************************4444.44334 PP

>> PF11315.3  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2   0.00017      0.34      35     114 ..       5      84 ..       1      85 [] 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
    PF11315.3  35 gttsqasaaqdklskiqeqlrtlklLlrklrlv...yekcneavagleetdvesLiPyaeeeeseketslisaelkkvlqere 114
                  + t++++++++      e++r l+ L + l+ +   +ek ++ ++ +e++   +   +a +++ e+e++ + a l+ v+++re
  MMETSP0890-20130614|22680_1   5 DETYSEKSSDEERERYNEHFRRLRRLTKTLKQIetaREKNKDRTTSIEPELSAK---LARQPQIEHEIQITRAALRIVEDARE 84 
                  556666666666688999999999886666555111677777666666665555...89999999999999999999999986 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.5    0.0011       2.2     201     272 ..       9      80 ..       2      84 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0011
   PF04791.11 201 ledekeeaessvddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivk 272
                  +e+   e  ++ ++ +++++rl++ l+  e  + k+++ + +++ el  ++ ++ q+e++++  r   +iv+
  MMETSP0890-20130614|22680_1   9 SEKSSDEERERYNEHFRRLRRLTKTLKQIETAREKNKDRTTSIEPELSAKLARQPQIEHEIQITRAALRIVE 80 
                  555666777888999*******************************************99999888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1248  (0.0912815); expected 273.4 (0.02)
Passed bias filter:                      805  (0.0588795); expected 273.4 (0.02)
Passed Vit filter:                        92  (0.00672908); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 286.89
//
Query:       MMETSP0890-20130614|22670_1  [L=890]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-07   30.3   0.0    1.1e-06   28.8   0.0    1.8  1  PF00691.15 OmpA family
      4e-05   23.3   0.0    9.1e-05   22.1   0.0    1.6  1  PF13180.1  PDZ domain
  ------ inclusion threshold ------
      0.059   13.4   0.0       0.16   12.0   0.0    1.7  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF00691.15  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.3e-10   1.1e-06      11      97 .]     779     881 ..     770     882 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.3e-10
   PF00691.15  11 akakktLeelaevlkyqeekd.qieieGh...............tdntgssey........nwdLSlrRAaaVvqyLqnegidpsrlavegfgesqplanedtdearaknr 97 
                  +k+   L ++ +vl+   ++  +++ eGh               t+      +        ++ LS++RA+aV++++ + gi p+r+ ++gf+ ++ l++  ++e+ + nr
  MMETSP0890-20130614|22670_1 779 PKSHPLLAQILRVLQ--TNPGiAVRFEGHvnstcgldcdgtkqcTS------RmckkipggAMGLSQARADAVKNFILACGIEPDRVYAQGFAGTRRLTDRLDEENGRINR 881
                  788888999999999..333337******99998888665443322......134456689*********************************99999998888655554 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     2e-08   9.1e-05       4      58 ..      16      70 ..      13      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2e-08
    PF13180.1  4 GvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslllk 58
                 G  +  +e++  + vvs k ++ aa++g+  GD+++ + g++v + +++  l++k
  MMETSP0890-20130614|22670_1 16 GLVLGCREGDAAAIVVSLKTGGAAAQNGVSEGDVVTRIAGRRVGDYDHVLALMAK 70
                 55556666677899*******************************9999998865 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.5e-05      0.16      24      62 ..      25      63 ..       8      75 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.5e-05
                 SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHH CS
   PF00595.19 24 dkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvsh 62
                 d  ++v ++  ggaa++ g++eGD+++++ g+ v +  h
  MMETSP0890-20130614|22670_1 25 DAAAIVVSLKTGGAAAQNGVSEGDVVTRIAGRRVGDYDH 63
                 35789999999*9999999**********9998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.86
# Mc/sec: 2479.95
//
Query:       MMETSP0890-20130614|22684_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   13.0   2.1       0.22   10.8   1.4    1.9  2  PF06940.6 Domain of unknown function (DUF1287)
       0.13   11.6   3.3       0.15   11.4   2.3    1.2  1  PF04574.8 Protein of unknown function (DUF592)
       0.36   10.9   8.1       0.39   10.8   5.2    1.4  1  PF07319.6 Primosomal protein DnaI N-terminus
       0.67    9.8   4.0       0.96    9.4   2.7    1.4  1  PF10591.4 Secreted protein acidic and rich in cysteine Ca binding region
       0.93    9.1   6.6        2.2    7.9   0.5    2.3  2  PF04382.8 SAB domain


Domain annotation for each model (and alignments):
>> PF06940.6  Domain of unknown function (DUF1287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1    0.0099        27      74      99 ..       3      29 ..       1      37 [. 0.72
   2 ?   10.8   1.4   7.9e-05      0.22      47     103 ..      17      71 ..       9      93 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0099
    PF06940.6 74 rpDkniDhRRvpnle.vffkrkgaslt 99
                 + +++iD  R +n + +f++++++  +
  MMETSP0890-20130614|22684_1  3 QEEQEIDIQRADNQQdIFLEHQAMIKE 29
                 67899********87367777665554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.9e-05
    PF06940.6  47 lgidLqklvhedmkknfsaYprkwglkrpDkniDhRRvpnlevffkrkgasltiekk 103
                  ++i L++  ++ +k+ +++ + +++l++ +++iD  Rv+n +  +  +++   +++ 
  MMETSP0890-20130614|22684_1  17 QDIFLEH--QAMIKEVVEKVKVNESLHQEEQEIDIQRVDNQQDNLLEHQELKIVKEA 71 
                  4444433..2345666777788899***************99876655544334433 PP

>> PF04574.8  Protein of unknown function (DUF592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3   5.5e-05      0.15      76     125 ..      25      80 ..       9      92 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.5e-05
    PF04574.8  76 ellnaiskvveveadseekvek........eeleDpLekkeivrlikdLqkainkvls 125
                  ++++++ + v+v+ + +++  +        ++ +D L +++ ++++k+ ++a++kv+ 
  MMETSP0890-20130614|22684_1  25 AMIKEVVEKVKVNESLHQE--EqeidiqrvDNQQDNLLEHQELKIVKEAESAVKKVIV 80 
                  3444444444433333333..244677888999***********************86 PP

>> PF07319.6  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.2   0.00014      0.39       8      63 ..      10      65 ..       4      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
                 --------HHHHHHHHHHHHHTT-HHHHHHHHHSTTT--HHHHHHTHHHHHHHHHS CS
    PF07319.6  8 lkkllkkrklekryeklkkevlkdpdVqaFlkehkeeltqeeierslsklyeyvee 63
                 +++  +++++  + ++++kev+++ +V++ l+++++e++ + ++++  +l e+ e 
  MMETSP0890-20130614|22684_1 10 IQRADNQQDIFLEHQAMIKEVVEKVKVNESLHQEEQEIDIQRVDNQQDNLLEHQEL 65
                 7888899999999**************************************98654 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.7   0.00035      0.96      35      81 ..      24      70 ..       2      82 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00035
    PF10591.4 35 ehseelekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplra 81
                 + + +++ e+ k n + ++e+ e   +++D ++d++l+++El+ +++
  MMETSP0890-20130614|22684_1 24 QAMIKEVVEKVKVNESLHQEEQEIDIQRVDNQQDNLLEHQELKIVKE 70
                 445566666667777778888888899***************99886 PP

>> PF04382.8  SAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5   0.00081       2.2       6      22 ..      14      30 ..      10      46 .. 0.82
   2 ?    4.4   0.4      0.01        28       3      16 ..      50      63 ..      48      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00081
    PF04382.8  6 dKtqdellkHqasIsEL 22
                 d  qd  l Hqa I+E 
  MMETSP0890-20130614|22684_1 14 DNQQDIFLEHQAMIKEV 30
                 7789***********96 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.01
    PF04382.8  3 eeLdKtqdellkHq 16
                 +  d  qd+ll Hq
  MMETSP0890-20130614|22684_1 50 QRVDNQQDNLLEHQ 63
                 667999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1592  (0.116442); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 339.78
//
Query:       MMETSP0890-20130614|22683_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-30  102.3   0.7    7.9e-24   83.1   0.1    2.3  2  PF01106.12 NifU-like domain
  ------ inclusion threshold ------
       0.05   13.5   0.0        4.6    7.1   0.0    2.1  2  PF09212.5  Carbohydrate binding module 27


Domain annotation for each model (and alignments):
>> PF01106.12  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.1   1.2e-27   7.9e-24       1      67 [.      56     122 ..      56     123 .. 0.98
   2 !   17.6   0.0     3e-07    0.0021       1      60 [.     135     191 ..     135     201 .. 0.72

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 1.2e-27
   PF01106.12   1 veevideiRPalqrDGGdvelvdvdgkkVkvrlqGaCsgCssstvTlkagierkLrerlgeslrVvp 67 
                  ve+v+de+RP+l+ DGG+v + ++dg  V+++l+GaC++C+sst+T+k+g+er+L+e ++e+ +V++
  MMETSP0890-20130614|22683_1  56 VEKVLDELRPYLISDGGNVRVEAIDGPVVRLELEGACGTCPSSTMTMKMGLERRLKEVIPEISEVIQ 122
                  89***************************************************************98 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 3e-07
   PF01106.12   1 veevideiRPalqrDGGdvelvdvdgk.kVkvrlqGaCsgCssstvTlkagierkLrerlg 60 
                  v+ev+d +RP l   GG v++vd+ g  +V+  l+ + +g s s +     +++++++r++
  MMETSP0890-20130614|22683_1 135 VNEVLDGVRPFLSVAGGQVDIVDLSGVsNVQPVLTLSLTGKSASLTS----VRQEITQRVH 191
                  789**********************9777776666666664444333....3444444444 PP

>> PF09212.5  Carbohydrate binding module 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0043        30      79     105 ..      50      76 ..      38      88 .. 0.84
   2 ?    7.1   0.0   0.00068       4.6      63     136 ..     113     186 ..     101     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0043
    PF09212.5  79 dlllpdvegltgalrpyivlnpgwvki 105
                   l l +ve +   lrpy++ + g v++
  MMETSP0890-20130614|22683_1  50 PLTLENVEKVLDELRPYLISDGGNVRV 76 
                  577899**************9999987 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00068
    PF09212.5  63 vvrkidelsvteileydlllpdvegltgalrpyivlnpgwvkigldqynv.svddlelvsidnkkykklhvrvef 136
                  v+ +i+e+ ++     dl l  v+ +   +rp++ +  g v i +d   v +v+ + ++s+ +k   +  vr e+
  MMETSP0890-20130614|22683_1 113 VIPEISEVIQALPSAPDLTLEAVNEVLDGVRPFLSVAGGQVDI-VDLSGVsNVQPVLTLSLTGKSASLTSVRQEI 186
                  56677777777777789*************************9.5665542899999999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.63
# Mc/sec: 779.77
//
Query:       MMETSP0890-20130614|22679_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-05   24.2   1.4      5e-05   23.3   0.4    1.9  2  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.4   3.6e-09     5e-05      96     198 ..     131     239 ..     110     245 .. 0.75
   2 ?   -3.7   0.0      0.68   9.2e+03     106     119 ..     268     280 ..     265     287 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.6e-09
                  E---S-----E.EEE-GGGTS-..........EE-.---EE-EEEESS-B-S----EEEE---------.......................-EEE----.............. CS
    PF05721.8  96 ifkqpkiGgevqpwHqDstflp..........tdp.eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllH 198
                   +++++  +++ p+H+D   +           + +  + ++++wial +at++n cl ++P     + + + ++ p     +        + + + ++++++G+a lf+ rllH
  MMETSP0890-20130614|22679_1 131 AAFYVDNDKAGWPPHRDRDDAThgnnsisqgfFADgIPKHCTLWIALSEATVQNSCLYCVPKQYDPGYFTKVKGGPLATVFFC-----PNSFQHILALPCNQGQAWLFSHRLLH 239
                  44555555555699998766665678877665333799***********************9999988888888887776666.....44456778899999999999999999 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.68
                  E.EEE-GGGTS-EE CS
    PF05721.8 106 vqpwHqDstflptd 119
                  v pwH D+   +t+
  MMETSP0890-20130614|22679_1 268 V-PWHDDNSSPFTN 280
                  6.9**998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.81
# Mc/sec: 1100.55
//
Query:       MMETSP0890-20130614|22690_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.77
# Mc/sec: 1017.67
//
Query:       MMETSP0890-20130614|22702_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00042   19.8   0.0    0.00059   19.3   0.0    1.2  1  PF00085.15 Thioredoxin
  ------ inclusion threshold ------
       0.97    9.3   4.2        1.4    8.7   0.6    2.6  3  PF13490.1  Putative zinc-finger


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.6e-08   0.00059       2      85 ..      77     166 ..      76     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.6e-08
                  EEESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-....TSEEEEEETTTT...HHHHHHTT--SSSEEEEESSSSEE CS
   PF00085.15   2 vlvltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelke....kvvlakvdvden...kdlaseygvegiPtlklfkngkkv 85 
                  v++l+ +nf  ++ + +++ ++  +A+ C +C +l   y+k+ae++++    ++ +a+ d++     + l+s ++   +P l+++++++k 
  MMETSP0890-20130614|22702_1  77 VVKLVYSNFSLALDE-TTDAMILIHATDCEPCAHLTVYYKKVAERFADlhlpHLLIARFDATLDtppPPLTSALSQADLPLLVFLPANNKH 166
                  677888899999888.99999****************************99999******9844223566677777777777777777665 PP

>> PF13490.1  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.086   5.9e+02       6      17 ..       4      15 ..       2      21 .. 0.80
   2 ?    8.7   0.6   0.00021       1.4      16      35 ..      89     108 ..      87     109 .. 0.93
   3 ?   -3.0   0.0         1     7e+03       7      17 ..     129     139 ..     128     140 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.086
    PF13490.1  6 ellsaYlDGeLs 17
                 + lsa+l G+L 
  MMETSP0890-20130614|22702_1  4 AFLSAFLAGTLR 15
                 679******996 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00021
    PF13490.1  16 LspeerarleaHLatCpaCr 35 
                  L++ ++a +  H+ +C++C 
  MMETSP0890-20130614|22702_1  89 LDETTDAMILIHATDCEPCA 108
                  8999***************6 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1
    PF13490.1   7 llsaYlDGeLs 17 
                  ll a++D +L+
  MMETSP0890-20130614|22702_1 129 LLIARFDATLD 139
                  67789999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.96
# Mc/sec: 536.68
//
Query:       MMETSP0890-20130614|22713_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0057   16.3   0.2      0.022   14.4   0.2    2.1  1  PF12840.2  Helix-turn-helix domain
  ------ inclusion threshold ------
      0.021   13.3   0.1       0.03   12.8   0.0    1.3  1  PF09670.5  CRISPR-associated protein (Cas_Cas02710)
       0.15   11.1   6.0        2.9    7.1   0.1    2.5  2  PF00322.12 Endothelin family


Domain annotation for each model (and alignments):
>> PF12840.2  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   4.8e-06     0.022       1      34 [.      37      70 ..      37     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.8e-06
                 HHHHHHHS-HHHHHHHHHH..H----HHHHHHHH CS
    PF12840.2  1 dqiakALahPvRrrilraLareegltaselaerl 34
                 dq ++AL+++ R+ +lra  +++ +tas+l+++ 
  MMETSP0890-20130614|22713_1 37 DQTLDALSDKNRLSFLRAVFTGAFMTASHLQQTE 70
                 6889***************899999999988765 PP

>> PF09670.5  CRISPR-associated protein (Cas_Cas02710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.5e-06      0.03     148     213 ..      83     149 ..      61     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.5e-06
    PF09670.5 148 gsalrlleelverlpdekeYaalkklaegylaWDsldheeAldalekvledell.leaerealekll 213
                  ++ l  l++ + rl+d+   + l   ++++ +W ++ +  A+++ +++   ++l l a   ++++ +
  MMETSP0890-20130614|22713_1  83 KQCLTTLDDQMDRLSDKTRLSYLVASCNMLQHWSAFSITDAIENVDEFQPLQTLhLVAAVLGVTAIT 149
                  6788999************999*************************99986654555555555555 PP

>> PF00322.12  Endothelin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.2    0.0021       9.5       7      17 ..      23      33 ..      19      35 .. 0.88
   2 ?    7.1   0.1   0.00063       2.9       7      17 ..      76      86 ..      74      87 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0021
   PF00322.12  7 sCndmtDkECl 17
                  C  ++DkECl
  MMETSP0890-20130614|22713_1 23 ACDLLNDKECL 33
                 59999*****8 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00063
   PF00322.12  7 sCndmtDkECl 17
                 +C++++Dk Cl
  MMETSP0890-20130614|22713_1 76 TCANLSDKQCL 86
                 8*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       779  (0.0569778); expected 273.4 (0.02)
Passed bias filter:                      591  (0.043227); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.71
# Mc/sec: 621.03
//
Query:       MMETSP0890-20130614|22712_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   20.7   0.1    0.00018   20.4   0.1    1.2  1  PF01062.16 Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
      0.053   13.2   0.8      0.071   12.8   0.6    1.1  1  PF06495.6  Fruit fly transformer protein
      0.077   11.7   0.1        0.1   11.2   0.0    1.3  1  PF06632.7  DNA double-strand break repair and V(D)J recombination protein XRCC4


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     4e-08   0.00018     250     287 ..      30      67 ..       4      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4e-08
   PF01062.16 250 plltvlqfyffvglekvaeeLenPFGeddddlelnalc 287
                  + l++l  +ff+ l  v++eL +PFG d+ d++l  l 
  MMETSP0890-20130614|22712_1  30 IALVALGILFFMTLHLVSNELDDPFGSDASDIPLLSLR 67 
                  67889999**************************9884 PP

>> PF06495.6  Fruit fly transformer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   1.6e-05     0.071      75     140 ..      85     149 ..      78     159 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.6e-05
    PF06495.6  75 rrrsrsrsrrrsdsrskssssterrrrsrsrsrysrtPkiitvyvqvPaady.syaygwpppapqls 140
                  ++r+r + +++ ++  ++ ++ ++r  +r r r s tPki t + q+P+    + +   pp +p ++
  MMETSP0890-20130614|22712_1  85 QQRHREHIKKQFGTHVRTIAA-QQRLLNRGRLR-SSTPKITTSHDQLPPPAPsTITPQSPPSSPIMA 149
                  346677777888888888888.99999****99.99**********998766133444455566665 PP

>> PF06632.7  DNA double-strand break repair and V(D)J recombination protein XRCC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.3e-05       0.1     264     322 ..      65     127 ..      47     147 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.3e-05
    PF06632.7 264 skddslvss..dvtdvaPsrkrrqrm..qknleteakaatqeqqlqekekldeelkeavkkes 322
                  s +d+l+++  d+t v    ++r+r   +k+++t++++ + +q+l ++ +l +++++ +  + 
  MMETSP0890-20130614|22712_1  65 SLRDALFIDldDITSVYHLEQQRHREhiKKQFGTHVRTIAAQQRLLNRGRLRSSTPKITTSHD 127
                  668899988889****99999999863379***********************9998776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.44s 00:00:00.90 Elapsed: 00:00:00.60
# Mc/sec: 710.92
//
Query:       MMETSP0890-20130614|22718_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-44  149.1   3.0    1.1e-43  148.8   2.1    1.1  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   2.1   8.4e-48   1.1e-43       2     199 ..      44     236 ..      43     238 .. 0.99

  Alignments for each domain:
  == domain 1    score: 148.8 bits;  conditional E-value: 8.4e-48
                  EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH....................................SCCHHHHHHHHHHHHTTSSEEEE-SSS CS
   PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi..................................gggelfgpdalekllekygvdlvlrGHeH 199
                  +++++gD+Hg+++dl     +l++i+++ +++++lf+GD+vdrg +s e+  l+   +lk+++p++v llrGNHEs++++++ygf++e+                                  +++++ +++ ++ + f+ lpl+a vd ++++ Hg+ls+s++++d+                                   g+g+ fg d  ek+  ++g+dl++r+H+ 
  MMETSP0890-20130614|22718_1  44 PVTIVGDIHGQFHDL----IELFRIGGHAPDTNYLFMGDYVDRGYYSVECVSLV--VALKVKYPNRVTLLRGNHESRQITQVYGFYDECV---------------------------------RKYGNANVWSLFTDLFDHLPLAAVVDDRLFCPHGGLSPSLDTVDQVialdrvhevphegpicdlmwsdpddrlgwgisprGAGYTFGQDISEKFNHENGFDLIVRAHQL 236
                  89*************....***********************************..*********************************9.................................59*********************************************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 1178.85
//
Query:       MMETSP0890-20130614|22759_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   64.3   0.0    1.6e-17   63.7   0.0    1.2  1  PF02769.17 AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02769.17  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   1.2e-21   1.6e-17       1     144 [.      59     211 ..      59     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 1.2e-21
                  -SSEEEEEE-----TT-HHHHHHHHHHHCT-GTB---CCCH.HHHHHHHHHHHHHT--SEEEE------CCCHHHHHHT---E.EEEEGGGSHHHHHHH.........-HHHHHHC.S-SS-EEEEEEGGGH.HHHHHHHHHTT-GGEEEEEEEES CS
   PF02769.17   1 kpGdvliltgslglggsgtslkrkllessglplqlgdlllektliyvvqalaaekglvkaahDitgGGLlgalaemafasgvg.aeidldevplfeele.........lalemlfs.ensGrllvvvppeda.eavlalleeeglheaaviGevtd 144
                  + Gd l+lt++lg+++++ +  +  l+++++   +   l +ktl + + +l+  k +++aa+Ditg+G+lg+++++a  ++++ +e+ l ++p+f+            ++l   fs e+sG+ll+++p+e+a ++++a+ +++     +++G+v++
  MMETSP0890-20130614|22759_1  59 QDGDILVLTKPLGTQVAVNFFEQDPLAANEAY--EKARLSMKTLNRRAAELMV-KYNAHAATDITGFGILGHTQNLALHQKLKnLEFRLQQLPVFKGMLqidarnpnlFKLAQGFSaETSGGLLISLPSEEAaQQFCAEKDSFLFGGPWIVGSVIQ 211
                  57****************88888888887766..4444555555555555555.5************************98754999999899998643666655555333333337***************99**99988775544788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.45s 00:00:00.87 Elapsed: 00:00:00.65
# Mc/sec: 855.32
//
Query:       MMETSP0890-20130614|22788_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-19   68.7  10.4    9.4e-19   67.7   7.0    1.5  1  PF08648.7  Protein of unknown function (DUF1777)
  ------ inclusion threshold ------
        0.2   10.4   3.8       0.21   10.3   2.6    1.1  1  PF00937.13 Coronavirus nucleocapsid protein
       0.76   10.5   4.2          2    9.2   2.9    1.7  1  PF08015.6  Fungal mating-type pheromone


Domain annotation for each model (and alignments):
>> PF08648.7  Protein of unknown function (DUF1777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   7.0   2.1e-22   9.4e-19      65     177 ..      44     150 ..      37     152 .] 0.66

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 2.1e-22
    PF08648.7  65 SprrlksgrersrsrsierrrdRkeerekkakepekkrerqksvdgvkeikeedlegksedevemmklmGfsgFdttkgkkvdgadvga....vnvqkkrkyRqYmnRkGGFnRPld 177
                  Sp+ ++ +   s++ s +r+r+R ++r+   ++p    + q   d  +  ++ d+   se+e +m  ++GfsgF ttk+  v+++ vga    v+++  r+yRqYmnR+GGFnR ld
  MMETSP0890-20130614|22788_1  44 SPNPERRRSPLSSDDSLSRHRSRSRSRS---PSP---VPAQ---DEETSKNKVDMSNLSEEE-QMAVMLGFSGFSTTKNSVVEDNHVGAarggVKKNPVRRYRQYMNRRGGFNRVLD 150
                  3333333444444555555555544432...233...2333...334555566666666655.77779*****************99753333788888***************999 PP

>> PF00937.13  Coronavirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.6   4.6e-05      0.21     166     217 ..      58     111 ..      15     142 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.6e-05
   PF00937.13 166 rsssrsssrsqsRsssrs..ksrsnsnkrkqssqddlvadvaaalaklvlakqk 217
                   s sr +srs+sRs+s    +  ++s+++ + s+ + ++++a  l   ++++ k
  MMETSP0890-20130614|22788_1  58 DSLSRHRSRSRSRSPSPVpaQDEETSKNKVDMSNLSEEEQMAVMLGFSGFSTTK 111
                  234566677777888877445555566665555444455555555445554444 PP

>> PF08015.6  Fungal mating-type pheromone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.9   0.00043         2      12      51 ..      61     100 ..      29     102 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00043
    PF08015.6  12 sssssaessesalfasssspspspalsssasasddevlav 51 
                  s + s+++s+s++ ++++++++s + ++++++s++e +av
  MMETSP0890-20130614|22788_1  61 SRHRSRSRSRSPSPVPAQDEETSKNKVDMSNLSEEEQMAV 100
                  678899*******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 551.89
//
Query:       MMETSP0890-20130614|22790_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-77  257.8   0.0    2.9e-75  252.2   0.0    2.1  1  PF01564.12 Spermine/spermidine synthase
  ------ inclusion threshold ------
      0.012   15.5   0.2      0.026   14.4   0.1    1.6  1  PF13659.1  Methyltransferase domain
       0.11   12.9   0.0       0.22   11.9   0.0    1.5  1  PF12847.2  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.2   0.0   6.4e-79   2.9e-75       2     236 ..      12     268 ..      11     276 .. 0.95

  Alignments for each domain:
  == domain 1    score: 252.2 bits;  conditional E-value: 6.4e-79
                  EEEESST.T----EEEEEEEEEEEEEEESSSEEEEEEES----EEEE---EEEETTTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-SEEEEEES-HHHHHHHHHH-HHHH--.TT-TTEEEEE----HHHHTCSS......................-BSEEEESSS-----GGGCCSHHHHHHHHHHB---.--EEEE---TTTSHHHHHHHHHHHHHHSSCEEEEEE--TTS-SS-EEEEEEE CS
   PF01564.12   2 wfeeelsqfdpglgveykvekvlyeekskiqeieifesspfGkillLdgrvqltekdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntvekitlvdiDqkvidfsrkflpslais.lndervkvvigdgfkflkaylvr.....................kfDvvivdstdpvgpaenlFskefydllkkalked.GvivlQakspelekelvinvdksgkqvfaqvepyavlvptylsgminfvves 236
                  wf+e    ++pg+ ++++v+k ly+eksk+q+i +fes+++G++l+Ldg++qlte+de+ay+emi+h+pl++h np++VLi+GGgDGgvlre++kh++v+ i++++iD  v++++r+++++  +  ++d+r+++v +d+ ++l+ ++                        +D +ivds+dpvgpa++lF+ +fy+++  +l+++ Gvi++Q ++ +l+ +l+++v++ ++++f++v ++++ vpty+ g+i+f++++
  MMETSP0890-20130614|22790_1  12 WFSESEV-MWPGQKFSLQVKKELYHEKSKFQDILVFESEKYGRVLVLDGVIQLTERDECAYQEMITHLPLFAHRNPQRVLIVGGGDGGVLREVTKHECVQLIDMCEIDATVVKIAREYFGESTATaFDDPRLTLVHDDAAEYLAVLAHGevkhdgtaaelakkrrdenfpGYDCIIVDSSDPVGPAQTLFEPQFYEAMRAVLTPGtGVICAQGECLWLHLDLISSVLTACSDIFPSVAYSYTSVPTYPCGQIGFIIAT 268
                  7877777.9***************************************************************************************************************998888****************99877666667788888888899999999********************************9879***********************************************9876 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   5.7e-06     0.026       2      70 ..      87     160 ..      86     222 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.7e-06
    PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl....aervrvrqgdlrdlaellrags 70 
                   rvl +g G G +l  + ++   +l+  +E+d+  +++a++ +++  +    ++r+++++ d++++ ++l  g+
  MMETSP0890-20130614|22790_1  87 QRVLIVGGGDGGVLREVTKHEcVQLIDMCEIDATVVKIAREYFGESTAtafdDPRLTLVHDDAAEYLAVLAHGE 160
                  69****************99667*****************9988855545557789999999998855554444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.22       3      78 ..      87     189 ..      85     229 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarena....ksldleeriellqgdakeelsller.......................fDavllkg 78 
                   r+l +G G G ++ e  + ++   ++  ++++  +++are      + +  ++r++l++ da e l++l+                        +D+++++ 
  MMETSP0890-20130614|22790_1  87 QRVLIVGGGDGGVLREVTKHECVQLIDMCEIDATVVKIAREYFgestATAFDDPRLTLVHDDAAEYLAVLAHgevkhdgtaaelakkrrdenfpgYDCIIVDS 189
                  68999**************655555***************666554434456699999998883333333335777777777777788888888899999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.85
# Mc/sec: 921.89
//
Query:       MMETSP0890-20130614|22809_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-22   78.7   0.3    5.2e-11   42.6   0.1    2.7  2  PF12796.2  Ankyrin repeats (3 copies)
      5e-19   67.7   3.1    3.7e-09   36.4   0.1    4.1  4  PF13857.1  Ankyrin repeats (many copies)
    4.3e-17   60.8   6.6      4e-06   26.2   0.1    5.3  5  PF00023.25 Ankyrin repeat
      9e-17   60.9   2.4      2e-07   31.2   0.1    4.0  3  PF13637.1  Ankyrin repeats (many copies)
    3.4e-12   45.2   4.4      0.021   14.9   0.0    4.6  5  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0     3e-14   8.2e-11      12      89 .]     408     491 ..     361     491 .. 0.81
   2 !   42.6   0.1   1.9e-14   5.2e-11       8      83 ..     472     551 ..     469     556 .. 0.90

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 3e-14
    PF12796.2  12 lvklLlekgadvdl..get...pLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrngh.lelvklLlekgadvnlrd 89 
                  ++ lL++ g +v++  g t   pLh+Aa  g++++++lL++  gad+n +  eg t+LhlAv+++h l +v  L+e gadv +r+
  MMETSP0890-20130614|22809_1 408 CLLLLHSFGISVEIvdG-TefsPLHHAAHFGDVACIDLLVArLGADINRRIPEGGTALHLAVCSKHpLAAVCKLVELGADVTVRN 491
                  44444455555555543.1578*******************569*****************99999569999*********9987 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 1.9e-14
    PF12796.2   8 gnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekga 83 
                    l +v +L+e gadv++    ++++LhlAa++g  ++v+lLl agad+  kd +gntp  +A  +gh  +v+ + ++ +
  MMETSP0890-20130614|22809_1 472 HPLAAVCKLVELGADVTVrnrcQQSALHLAAARGLNQVVELLLIAGADPILKDSKGNTPADIAYTAGHCICVDTIRSYRS 551
                  557899***********98887777***********************************************99988765 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.69   1.9e+03      30      47 ..     363     381 ..     362     382 .. 0.79
   2 !   27.8   0.1   6.7e-10   1.8e-06       1      56 []     412     467 ..     410     467 .. 0.93
   3 !   17.7   0.1     1e-06    0.0028      10      53 ..     456     498 ..     450     498 .. 0.82
   4 !   36.4   0.1   1.4e-12   3.7e-09       1      56 []     480     534 ..     480     534 .. 0.97

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.69
    PF13857.1  30 evvrlLl.apgadlnlrds 47 
                  +vvrlLl  ++ d +++++
  MMETSP0890-20130614|22809_1 363 SVVRLLLeGRNRDHTTTNT 381
                  5899999888888888875 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 6.7e-10
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  L++ g ++v   d++ ++pLh Aa+ g++ +++lL+ + gad+n r  +g tal+lA
  MMETSP0890-20130614|22809_1 412 LHSFG-ISVEIVDGTEFSPLHHAAHFGDVACIDLLVaRLGADINRRIPEGGTALHLA 467
                  44555.999**********************************************98 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 1e-06
    PF13857.1  10 natdeggntpLhlAak.ggalevvrlLlapgadlnlrdsdgltal 53 
                     ++g  t+LhlA+  ++ l +v++L++ gad ++r+ + ++al
  MMETSP0890-20130614|22809_1 456 RIPEGG--TALHLAVCsKHPLAAVCKLVELGADVTVRNRCQQSAL 498
                  334444..******************************9888886 PP

  == domain 4    score: 36.4 bits;  conditional E-value: 1.4e-12
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  L+e g adv  ++++ +++LhlAa +g  +vv+lLl +gad+ l+ds g+t+ d+A
  MMETSP0890-20130614|22809_1 480 LVELG-ADVTVRNRCQQSALHLAAARGLNQVVELLLIAGADPILKDSKGNTPADIA 534
                  78999.9999*********************************************9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.37     1e+03      16      29 ..     363     375 ..     355     379 .. 0.80
   2 !   20.6   0.0   8.6e-08   0.00024       3      30 ..     427     455 ..     425     457 .. 0.94
   3 !   12.4   0.0   3.4e-05     0.094       2      32 ..     460     491 ..     459     492 .. 0.91
   4 !   26.2   0.1   1.5e-09     4e-06       3      32 ..     495     524 ..     493     525 .. 0.94
   5 ?   -0.9   0.0      0.58   1.6e+03       2      17 ..     527     542 ..     526     550 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.37
                  HHHHHHHHTTSSTT CS
   PF00023.25  16 evvklLlsqGAdln 29 
                  +vv+lLl+ G + +
  MMETSP0890-20130614|22809_1 363 SVVRLLLE-GRNRD 375
                  79*****9.66655 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 8.6e-08
                  CBHHHHHHHTTHHHHHHHHHH.TTSSTTH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLls.qGAdlna 30 
                  f+PLH Aa+ g++ ++ lL+   GAd+n 
  MMETSP0890-20130614|22809_1 427 FSPLHHAAHFGDVACIDLLVArLGADINR 455
                  89*************************96 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 3.4e-05
                  SCBHHHHHHHTT.HHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrg.nlevvklLlsqGAdlnaqd 32 
                  G T+LHlA+++   l  v  L++ GAd+++++
  MMETSP0890-20130614|22809_1 460 GGTALHLAVCSKhPLAAVCKLVELGADVTVRN 491
                  66**********99999999********9998 PP

  == domain 4    score: 26.2 bits;  conditional E-value: 1.5e-09
                  CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +++LHlAa rg  +vv+lLl +GAd+ ++d
  MMETSP0890-20130614|22809_1 495 QSALHLAAARGLNQVVELLLIAGADPILKD 524
                  78************************9998 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.58
                  SCBHHHHHHHTTHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlev 17 
                  G+TP  +A   g+  +
  MMETSP0890-20130614|22809_1 527 GNTPADIAYTAGHCIC 542
                  9***999999997555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   7.3e-11     2e-07       3      42 ..     428     468 ..     426     473 .. 0.94
   2 !   21.3   0.1   9.2e-08   0.00025       9      54 .]     469     514 ..     467     514 .. 0.91
   3 !    9.4   0.0    0.0005       1.4      15      46 ..     508     539 ..     507     546 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 7.3e-11
    PF13637.1   3 taLhyaaisgrlelvklLlek.gidinrt.desGntaLhiAa 42 
                  ++Lh+aa++g++ ++ lL+++ g+dinr+ +e G taLh+A+
  MMETSP0890-20130614|22809_1 428 SPLHHAAHFGDVACIDLLVARlGADINRRiPE-GGTALHLAV 468
                  89******************99*******998.*******98 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 9.2e-08
    PF13637.1   9 aisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  +++++l +v  L+e g+d+  +++++ +aLh+Aa rg  ++++lLl
  MMETSP0890-20130614|22809_1 469 CSKHPLAAVCKLVELGADVTVRNRCQQSALHLAAARGLNQVVELLL 514
                  56788999*****************************888888886 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0005
    PF13637.1  15 elvklLlekgidinrtdesGntaLhiAalrgn 46 
                  ++v+lLl  g+d+  +d++Gnt+ +iA  +g+
  MMETSP0890-20130614|22809_1 508 QVVELLLIAGADPILKDSKGNTPADIAYTAGH 539
                  6899***********************88887 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         5   1.4e+04      16      23 ..     222     229 ..     218     231 .. 0.74
   2 ?   -3.4   0.0         5   1.4e+04      15      23 ..     362     370 ..     359     372 .. 0.85
   3 !   14.9   0.0   7.7e-06     0.021       4      29 ..     428     454 ..     425     455 .. 0.91
   4 !   14.7   0.0   8.7e-06     0.024       2      28 ..     460     487 ..     459     489 .. 0.89
   5 !   14.0   0.1   1.5e-05      0.04       2      28 ..     494     520 ..     493     522 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5
    PF13606.1  16 elveaLle 23 
                    +++L++
  MMETSP0890-20130614|22809_1 222 RHIKYLIK 229
                  56999997 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 5
    PF13606.1  15 ielveaLle 23 
                  i++v++Lle
  MMETSP0890-20130614|22809_1 362 ISVVRLLLE 370
                  57999**98 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 7.7e-06
    PF13606.1   4 TpLhlAasngrielveaLlen.gadin 29 
                  +pLh+Aa++g ++ +++L+ + gadin
  MMETSP0890-20130614|22809_1 428 SPLHHAAHFGDVACIDLLVARlGADIN 454
                  8******************755****9 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 8.7e-06
    PF13606.1   2 GnTpLhlAasngri.elveaLlengadi 28 
                  G T+LhlA+ ++++ ++v  L+e gad+
  MMETSP0890-20130614|22809_1 460 GGTALHLAVCSKHPlAAVCKLVELGADV 487
                  77**********95499**********8 PP

  == domain 5    score: 14.0 bits;  conditional E-value: 1.5e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                   +++LhlAa +g  ++ve+Ll +gad+
  MMETSP0890-20130614|22809_1 494 QQSALHLAAARGLNQVVELLLIAGADP 520
                  589**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.06u 0.41s 00:00:01.47 Elapsed: 00:00:00.98
# Mc/sec: 1533.18
//
Query:       MMETSP0890-20130614|22820_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      550  (0.0402282); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.64
# Mc/sec: 936.08
//
Query:       MMETSP0890-20130614|22816_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-26   92.5  30.7    1.9e-14   53.3   6.9    3.1  3  PF01699.19 Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.061   12.7   0.0    1.3  1  PF09045.5  L27_2


Domain annotation for each model (and alignments):
>> PF01699.19  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   3.2   1.7e-17   1.2e-13      33     138 ..       1     106 [.       1     107 [. 0.95
   2 ?    0.7   0.8     0.048   3.3e+02      63     114 ..     288     331 ..     261     334 .. 0.75
   3 !   53.3   6.9   2.7e-18   1.9e-14       2     138 ..     331     467 ..     330     468 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.7e-17
   PF01699.19  33 lAlgtsapElissiiaalkg.agdlalgsivGSalfnlllviglcvlisplgekr.iqkvlvfkvtldfsflllvllllllivllsdgrltvweglvllllyilylvl 138
                  +A+g+ ap+++++  a+ +   ++l+l++++G+++f++++v+g+++l++  ++ +   +v+ f++ +d + l+++++ l+ +vl  dgr++++e+++ ++lyi+yl++
  MMETSP0890-20130614|22816_1   1 MAFGNGAPDVFTAWNAIESAsDASLVLAELLGACMFIITVVLGFVILAAHGRRRNgSCQVDPFPFARDTLSLAICVFSLCACVL--DGRIQLVESVAVIALYICYLLV 106
                  8*****************988**************************99987666999*****************999999999..********************97 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.048
   PF01699.19  63 GSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivl 114
                  G ++f + ++ g+ v+ s++        + ++ +l++ ++l+v+ +l ++++
  MMETSP0890-20130614|22816_1 288 GIIIFFIGCIAGFLVFKSSA--------DDTPPSLSLKTILVVIGFLSCVAW 331
                  44566666666666666665........778888888888888888877766 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 2.7e-18
   PF01699.19   2 lislladilvesieqiakvlglsetvlgltllAlgtsapElissiiaalkgagdlalgsivGSalfnlllviglcvlisplgekriqkvlvfkvtldfsflllvllllllivll.sdgrltvweglvllllyilylvl 138
                  ++ lla   +  +e+++++ g+s +vlg+t lA+g+ +++l++  ++a+ g+   a++s++ S+lf   l +g++v++++++++       + + l+f   +++ l+l++iv++ s   l +  ++vl+++y++y++l
  MMETSP0890-20130614|22816_1 331 WLDLLASETCAVLESLGAASGVSSAVLGVTALAWGNCIGDLVADTAVARAGNSKAAVASVFNSPLFSQVLSLGFPVMYYTMYKGPLNISIDTEAVLSFIGVAFC-LFLTTIVCAcSGASLPRRYAFVLFTIYGVYMIL 467
                  88899****************************************************************************98874444444444444444444.66666666669*******************987 PP

>> PF09045.5  L27_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     9e-06     0.061      30      46 ..     386     402 ..     380     407 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9e-06
    PF09045.5  30 llksvLqSPLFnqiLaL 46 
                  ++ sv +SPLF+q+L+L
  MMETSP0890-20130614|22816_1 386 AVASVFNSPLFSQVLSL 402
                  6789************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:01.15
# Mc/sec: 1012.25
//
Query:       MMETSP0890-20130614|22823_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   37.3   5.1      2e-09   37.3   3.5    2.2  2  PF10187.4 N-terminal domain of NEFA-interacting nuclear protein NIP30
  ------ inclusion threshold ------
      0.049   13.4   0.5      0.049   13.4   0.4    2.4  2  PF09645.5 F-112 protein
        1.5    8.6   6.5          2    8.2   4.5    1.2  1  PF06217.7 GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF10187.4  N-terminal domain of NEFA-interacting nuclear protein NIP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   3.5   4.5e-13     2e-09      35      99 ..      10      75 ..       2      79 .. 0.88
   2 ?    0.9   1.2     0.097   4.4e+02      80      96 ..     108     124 ..      96     133 .. 0.48

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 4.5e-13
    PF10187.4 35 ydgksLyerLqenkekKqeefeekmkl..knqvrgLDedEveFLdeveeekraaekkrkreeaeeLe 99
                  +g++L+e+L+e+kek q+e+e ++kl   +  +gL++d+v F+++ +++++      ++e+++e+ 
  MMETSP0890-20130614|22823_1 10 SRGRTLFEQLKEQKEKQQKEYETNTKLifAPP-KGLEQDDVAFIEAEAKKQKSLTLVAEKETEREIA 75
                 689*********************99732566.*******************999999999999875 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.097
    PF10187.4  80 eeekraaekkrkreeae 96 
                  ++ k a+e+k+k+e ++
  MMETSP0890-20130614|22823_1 108 KRRKIAEETKQKKEPRQ 124
                  23333333333333222 PP

>> PF09645.5  F-112 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   1.1e-05     0.049      57     108 ..       7      54 ..       2      59 .. 0.73
   2 ?   -0.3   2.3      0.18   8.3e+02      59      86 ..     101     128 ..      57     151 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.1e-05
                  EEEE-SS-EEEEE--------------------------------------- CS
    PF09645.5  57 evqkknrktvfkwikqeqkeeqkqeqtqdniakifdaqpanfeqtdqgfika 108
                  +v+ ++r t f+ +k eqke+q++e   +  +k++ a p  +eq d +fi a
  MMETSP0890-20130614|22823_1   7 DVISRGR-TLFEQLK-EQKEKQQKEY--ETNTKLIFAPPKGLEQDDVAFIEA 54 
                  6777776.6777776.6676665554..344678889*************87 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.18
                  EE-SS-EEEEE----------------- CS
    PF09645.5  59 qkknrktvfkwikqeqkeeqkqeqtqdn 86 
                  q    k   + i +e k++++  q +++
  MMETSP0890-20130614|22823_1 101 QFEATKIKRRKIAEETKQKKEPRQERED 128
                  2223333333333333333333333333 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.5   0.00044         2      74     196 ..      26     149 ..       6     158 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00044
    PF06217.7  74 nkalverdnkllalllvenspvgvqvl.setksihslqmlkhpqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvi 196
                  +++  e + kl+   ++  ++  v  +  e+k+ +sl  + ++++e + +++ e+ + +++p+    + +k kk++ +  + k+ k  +++k+kk++++++++  k+++++++  +k+++ l+ 
  MMETSP0890-20130614|22823_1  26 QQKEYETNTKLIFAPPKGLEQDDVAFIeAEAKKQKSLTLVAEKETEREIAKAFESTTRDHFPVIVRSHPVKVKKSQFEATKIKRRKIAEETKQKKEPRQEREDIIKPNISSNTSPSKNTTTLTA 149
                  3333333333333333333333333331456666666667777888777787777777777766555555555555557778888888888999999999999999999888777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1646  (0.120392); expected 273.4 (0.02)
Passed bias filter:                      628  (0.0459333); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.85
# Mc/sec: 470.81
//
Query:       MMETSP0890-20130614|22854_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-10   39.4   0.0    1.6e-09   37.6   0.0    1.9  2  PF02798.15 Glutathione S-transferase, N-terminal domain
    0.00013   22.0   0.0    0.00028   20.9   0.0    1.5  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    0.00014   21.5   0.0    0.00029   20.5   0.0    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.019   14.8   0.0    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
       0.05   13.5   0.0        0.2   11.5   0.0    2.0  3  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   5.8e-13   1.6e-09       9      76 .]       1      68 [.       1      68 [. 0.93
   2 ?   -1.8   0.0       1.2   3.3e+03      37      49 ..      87      99 ..      77     106 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 5.8e-13
                 SCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEET...TTEEEESHHHHHHHHHH CS
   PF02798.15  9 rgraeslrillaekgveyeivrvdfeagegkspewlklnpkigrvPaledg...dglklteSlAIarYlar 76
                 r rae++++ll +++v+ye + +++  +e +s e +k +p  +++P+le+    +  ++++S+ I+rYlar
  MMETSP0890-20130614|22854_1  1 RARAEPIHLLLHYADVDYERHDLSM--KELASGERGKQFPS-SQLPVLEILtrdERPCISQSGSIMRYLAR 68
                 569*********************9..66667*********.********9998899************97 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.2
                 HCHHHHHHHHCTT CS
   PF02798.15 37 egkspewlklnpk 49
                 ++ s+e+ k np+
  MMETSP0890-20130614|22854_1 87 FELSQEFAKVNPM 99
                 3446999999998 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     1e-07   0.00028      13      72 ..       7      71 ..       3      78 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1e-07
                 HHHHHHH----EEE----TTTTHHHHHHH-.TT--SSEE....E----EEESHHHHHHHHHHH-- CS
    PF13417.1 13 vrlaLeekglpyelvevtpgkkrpellaln.pkgkvPvL....eddgevltdSlvIieyLeerfp 72
                 + l+L+++ ++ye +++  ++  +  + +  p  ++PvL    +d+   +++S +I++yL ++++
  MMETSP0890-20130614|22854_1  7 IHLLLHYADVDYERHDLSMKELASGERGKQfPSSQLPVLeiltRDERPCISQSGSIMRYLAREHG 71
                 5789***********9998887666666667********766334455*************9997 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.1e-07   0.00029      14      67 ..     129     189 ..     125     202 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
                  THGGG------SS.----..---HHHHHHHHHHHHHHHHH---.....---TT----HHHH CS
    PF13410.1  14 aLdaleahLadgpfllGd..rpslaDialapflvrldaagpgl.....direayPnlrawl 67 
                   L a +++L+ + f+ G+  +p++aD++ ++ l  ld   p++     + ++++ nl +w+
  MMETSP0890-20130614|22854_1 129 RLQAASQLLGENKFFSGNdvEPCYADFNMWHYLDNLDSLIPDIlksmsTSKQDLSNLSDWM 189
                  5889999**********************************99999988889999999997 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     7e-06     0.019      35      95 .]     128     196 ..     125     196 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7e-06
                  HHHHHHHHHHHTSSSSSSS..S-BHHHHHHHHHHHHHHHHTTTTT......HTT-HHHHHHHHHHHHSH CS
   PF00043.20  35 evlealeeelsgkkylvGd..kltlADialfpalewlqrldgnfl......eeefPklkawlkriaarp 95 
                  + l+a    l ++k++ G+  ++ +AD+ + + l++l++l +++l       ++  +l++w+ ria++p
  MMETSP0890-20130614|22854_1 128 PRLQAASQLLGENKFFSGNdvEPCYADFNMWHYLDNLDSLIPDILksmstsKQDLSNLSDWMLRIAQLP 196
                  6678888889999***99834567*****************************************9987 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.3e-05       0.2       8      69 ..       7      68 ..       3      69 .. 0.79
   2 ?   -3.0   0.0       2.5   6.8e+03      36      43 ..      92      99 ..      86     116 .. 0.59
   3 ?   -2.4   0.0       1.6   4.4e+03      10      28 ..     188     206 ..     184     221 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.3e-05
                 HHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----...EEESHHHHHHHHHH CS
    PF13409.1  8 vlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgt...vineSseIlrylne 69
                 ++++l+++ +++e   +++++    +s e  +  p+ ++PvL++ +      i  S  I+ryl++
  MMETSP0890-20130614|22854_1  7 IHLLLHYADVDYERHDLSMKEL---ASGERGKQFPSSQLPVLEILTRDerpCISQSGSIMRYLAR 68
                 6789999999999888877433...345788999**********7544568999*********86 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.5
                 HHHHH--- CS
    PF13409.1 36 ellalspr 43
                 e+++++p 
  MMETSP0890-20130614|22854_1 92 EFAKVNPM 99
                 55555554 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.6
                  HHHHH----EEEEEEH... CS
    PF13409.1  10 ialalkgledeisvvplep 28 
                  ++l+ ++l+ + + ++ +p
  MMETSP0890-20130614|22854_1 188 WMLRIAQLPGVAQYLSTRP 206
                  6677777776655443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 677.49
//
Query:       MMETSP0890-20130614|22884_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    8.7   3.7        2.3    7.9   2.6    1.5  1  PF14038.1 YqzE-like protein


Domain annotation for each model (and alignments):
>> PF14038.1  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.6   0.00017       2.3      13      36 ..      15      38 ..      10      44 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00017
    PF14038.1 13 vVkyldtPkeeRkkkkeerkeeke 36
                  ++ ++  + eR+++  erk+ek+
  MMETSP0890-20130614|22884_1 15 RIQAMERQRAERRQQMDERKNEKK 38
                 57889*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1042  (0.0762142); expected 273.4 (0.02)
Passed bias filter:                      720  (0.0526624); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 384.77
//
Query:       MMETSP0890-20130614|22890_1  [L=1146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.4   0.0     0.0084   15.9   0.0    2.5  2  PF08389.7 Exportin 1-like protein


Domain annotation for each model (and alignments):
>> PF08389.7  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.1e-07    0.0084       3      71 ..      69     144 ..      67     195 .. 0.83
   2 ?   -3.7   0.0      0.66     9e+03      97     114 ..     795     812 ..     780     816 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.1e-07
                  HHHHHHHHHHHHHHHHHT..TTTSTTHHHHHHHHHHG-HHHHHHHHHHHHHHHHHHCC.....S-TTTS-CCCHHH CS
    PF08389.7   3 flrnklaealaelflqey..pnqWpsffddllsllssspsglelllriLkvlpeEiad.....fsrskleqerrne 71 
                  f++  + +++a++++  +  +n+ ++++d++ +l ++s+s++ l lr+L+ l eE  +         +l+q+r+++
  MMETSP0890-20130614|22890_1  69 FVLGSVIKTIARIVKLGWfdGNRHREIIDQVARLYKTSASHCRLALRLLLQLVEEFNSsggnrAEMRSLTQQRKSA 144
                  677778899*********99999********************************988764333336677777665 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.66
                  ...HHHHHHHHHHHHHHC CS
    PF08389.7  97 kksselveatLkclsswv 114
                  ++++e++ a L+cl++ v
  MMETSP0890-20130614|22890_1 795 SERHEVLVALLRCLQELV 812
                  345778888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:01.47
# Mc/sec: 1868.18
//
Query:       MMETSP0890-20130614|22968_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.43s 00:00:01.11 Elapsed: 00:00:00.73
# Mc/sec: 1293.38
//
Query:       MMETSP0890-20130614|22984_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       590  (0.0431539); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 208.21
//
Query:       MMETSP0890-20130614|22994_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   82.7   0.0    8.3e-23   79.9   0.0    2.5  3  PF06968.8  Biotin and Thiamin Synthesis associated domain
    1.8e-09   37.8   0.1    4.3e-09   36.6   0.0    1.6  1  PF04055.16 Radical SAM superfamily
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.32   10.9   0.0    1.7  1  PF13353.1  4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> PF06968.8  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   6.7e+03      48      73 ..     210     245 ..     196     253 .. 0.56
   2 ?   -1.7   0.0      0.53   2.4e+03      55      74 ..     292     311 ..     281     324 .. 0.75
   3 !   79.9   0.0   1.8e-26   8.3e-23       1      92 []     336     480 ..     336     480 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.5
    PF06968.8  48 elrdlqaltfmsganstfvGgy..........lttt 73 
                   ++d++++    ++ +t++ g           l+++
  MMETSP0890-20130614|22994_1 210 TFDDFLRVVHVVAGVRTEPCGNirrinveipaLSIS 245
                  355677777777777777655545555555555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.53
    PF06968.8  55 ltfmsganstfvGgyltttd 74 
                   ++++g++ +++G  + + d
  MMETSP0890-20130614|22994_1 292 RAQIAGIDDVGIGALFGLFD 311
                  7899*********9987776 PP

  == domain 3    score: 79.9 bits;  conditional E-value: 1.8e-26
    PF06968.8   1 pinf..Lrpiegtpl...dkkpvsdeellkliaaaRlllPkagirlstgreaelrd.lqa..ltfmsganstfvGgy.............................................ltttdnrsvdedikmlkklglep 92 
                  +i++  +rp++ +p    ++ pvsd ++lkl+a++R ++P++g++lst+++a++r  l++  +++ms++++t vG y                                             +++ d+rs+de+++ l++ g+ p
  MMETSP0890-20130614|22994_1 336 TISIprMRPADQAPSsihPPAPVSDADFLKLVAVLRCAVPYTGMILSTRESAHMRRkLLHlgISQMSAGSKTDVGAYakgdqqteldsfgtsphldlfdhldqhpetqdnaqkaaatelkgqFSLLDHRSLDEIVRDLMDHGFVP 480
                  688888********99999*************************************9999**********************************************************************************976 PP

>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   9.5e-13   4.3e-09       5     148 ..     156     306 ..     152     320 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 9.5e-13
                  CEESS--TT-CCCTCHHHHHHHHHHHHHHHHHHHHHHTCS-.CEEEEE---SGGGTTTHHHHHHHHHHCH.......EECCEEEEEE-SSCH.HHHHHHHHHTT.-SEEEEEEESSSHH...HHHHCCTCTS-HHHHHHHHHHHHHHSSET.EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
   PF04055.16   5 rgCnlrCsfCanpetsregrgrsrsveeileevkelkeekg.vkevtltGgepllypdfvellerlakla.......lpgirialetngtlpdeeileelaelg.vdrvslglesgdee...kvlklmrrghtfeevlealeklreagikr.vvdfi 148
                  + C + C++Ca++ + +     s++ eei  ev+ l e++g  + + ltG +p +   f ++l+  +  a         + ri +e ++        ++l+e g + +++l  e+++++    v+    ++ +fe +l++++++  agi++ ++  +
  MMETSP0890-20130614|22994_1 156 NYCVNSCTYCAFRSKNKHIARSSLTDEEIRYEVETL-EKMGhRRLLLLTGEHPKY--TFDDFLRVVHVVAgvrtepcGNIRRINVEIPALS--ISDFRRLKETGeIGTYTLFQETYHKDsfkHVHPDG-PKSDFEYRLQTMDRAQIAGIDDvGIGAL 306
                  78**********************************.9***88888888888877..4667777777777779999999999999999999..589***********************885555555.*********************9444444 PP

>> PF13353.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.1e-05      0.32      10      74 ..     152     216 ..     141     229 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.1e-05
    PF13353.1  10 lf.vsGCnlkCkgC.fnketwdfkkgkkftkelleeiiedlknekiegltllGGEPllpenaealle 74 
                  l+  + C  +C +C f  ++++  ++   t+e++   +e l++  +  l ll GE    +  +++l+
  MMETSP0890-20130614|22994_1 152 LYlANYCVNSCTYCaFRSKNKHIARSS-LTDEEIRYEVETLEKMGHRRLLLLTGEHPK-YTFDDFLR 216
                  335678********5556666666666.555555666688999999999999999544.34555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       568  (0.0415448); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.40s 00:00:01.32 Elapsed: 00:00:01.24
# Mc/sec: 1093.82
//
Query:       MMETSP0890-20130614|23031_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00033   20.4   6.6    0.00033   20.4   4.5    1.8  2  PF00170.16 bZIP transcription factor
  ------ inclusion threshold ------
       0.62    9.8  11.3        0.1   12.3   5.1    1.8  2  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.86   5.9e+03      27      39 ..     146     158 ..     144     159 .. 0.73
   2 !   20.4   4.5   4.8e-08   0.00033       4      43 ..     223     262 ..     220     272 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.86
                  HHHHHHHHHHHHH CS
   PF00170.16  27 eieeLeekvkeLe 39 
                  ++++Le++  +L+
  MMETSP0890-20130614|23031_1 146 RTKQLENRPNALK 158
                  6788888877776 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.8e-08
                  XCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
   PF00170.16   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                   k+e  k +NRe A++ R+R k++ie L+  v+eL+++++
  MMETSP0890-20130614|23031_1 223 EKAELVKKRNREHAQATRRRQKMYIEYLKSQVEELSNQRQ 262
                  68888899*****************************984 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.8   1.2e+04      32      42 ..     145     155 ..     143     158 .. 0.51
   2 ?   12.3   5.1   1.5e-05       0.1       9      40 ..     229     260 ..     221     263 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.8
   PF07716.10  32 ervkeLeeeNa 42 
                  +r k+Le++ +
  MMETSP0890-20130614|23031_1 145 SRTKQLENRPN 155
                  55556655544 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.5e-05
   PF07716.10   9 RrrNreAArrsRekkkakeeeleervkeLeee 40 
                  ++rNre A+ +R ++k++ e+l+++v+eL+++
  MMETSP0890-20130614|23031_1 229 KKRNREHAQATRRRQKMYIEYLKSQVEELSNQ 260
                  569**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       848  (0.0620246); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.92
# Mc/sec: 1750.38
//
Query:       MMETSP0890-20130614|23052_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       675  (0.049371); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.32s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 522.19
//
Query:       MMETSP0890-20130614|23117_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   13.9   7.9      0.056   13.2   5.5    1.3  1  PF07133.6 Merozoite surface protein (SPAM)
       0.16   10.1   9.8       0.29    9.2   6.8    1.4  1  PF06375.6 Bovine leukaemia virus receptor (BLVR)
        1.2    6.9  14.5          2    6.2  10.1    1.3  1  PF02724.9 CDC45-like protein
        1.8    9.1  23.1        7.1    7.2  16.0    2.1  1  PF11942.3 Spt5 transcription elongation factor, acidic N-terminal
        3.1    6.2  12.2        4.5    5.7   8.4    1.1  1  PF12569.3 NMDA receptor-regulated protein 1
        5.2    6.7   8.5         12    5.5   5.9    1.6  1  PF06459.7 Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> PF07133.6  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.5   2.5e-05     0.056      36     108 ..     156     245 ..     127     267 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.5e-05
    PF07133.6  36 ivkEnedvkdekqEdeeeeeeeee.................neeieekeeeedeeEivEeeeeEeekkeeeekkeekdeekkqsn.eisne 108
                    k   +v d+ ++d++e+  + +                  ee++ +e+ ++e  i Ee+      k+ee   + +   k++++  i +e
  MMETSP0890-20130614|23117_1 156 AEKMSAQVDDDDDDDDDETPPDVDndddffspppaaasapqKEETKITENVDEEARIKEEKRLRRK-KKEEKARKAERRRKRTEEkRIAQE 245
                  5555556655555555554333336678*******9999999999999999999999999988874.333333333333333332033332 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.8   0.00013      0.29     233     300 ..     185     254 ..     144     272 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00013
    PF06375.6 233 ddspaaaasvleedevslavtvlkeaqeeereenkdakaees.kkssktkkkkqrkeke.ekkkkkkksk 300
                   + p+aaas+ +++e++++  v +ea+ +e+++ +  k+ee  +k+ +++k+ + k    e++++++ + 
  MMETSP0890-20130614|23117_1 185 FSPPPAAASAPQKEETKITENVDEEARIKEEKRLRRKKKEEKaRKAERRRKRTEEKRIAqEREQSRNPNT 254
                  3568889999999999999999999998887777766666552555544444433332225555554444 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.1   0.00087         2     126     214 ..     165     264 ..     138     269 .. 0.42

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00087
    PF02724.9 126 emkeeeeeesdedsdseddeeeeessa.........sekrksesdedeeddddeededeeqrkrsnessl..........akslrrrrrrereekeevlekyYaqgts 214
                  ++++ +++e   d d++d        +         s  +k+e +  e+ d++ + ++e++ +r++++++          ++++r  + re+++++++ ++yY++g +
  MMETSP0890-20130614|23117_1 165 DDDDDDDDETPPDVDNDD--------DffspppaaaSAPQKEETKITENVDEEARIKEEKRLRRKKKEEKarkaerrrkrTEEKRIAQEREQSRNPNTYSSYYSRGGT 264
                  111111122222333333........1333333333333333333333333333333333333333333334455555444444555556666666677777777665 PP

>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  16.0    0.0031       7.1       5      69 ..     160     241 ..     158     268 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0031
    PF11942.3   5 EAevddeeeEeeeeedeeeelseeaefieea..................eddrrhreldrrrekeeeedaeelaevl.klekrY 69 
                   A+vdd+++++++  +  ++ +++++f ++                   ++++r++e++r r+k++ee+a++ + +  + e++ 
  MMETSP0890-20130614|23117_1 160 SAQVDDDDDDDDD--ETPPDVDNDDDFFSPPpaaasapqkeetkitenvDEEARIKEEKRLRRKKKEEKARKAERRRkRTEEKR 241
                  69***99999994..45789999999999999****************988888888888888888888888887775444443 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.4     0.002       4.5     393     442 ..     200     249 ..     190     269 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.002
    PF12569.3 393 pkakeeeeeeaanaelsaaerkklrkkakkaekkaekeeaekaekeeekk 442
                   k +e+ +eea ++e++   rkk ++ka+kae+++++ e+++ ++e+e++
  MMETSP0890-20130614|23117_1 200 TKITENVDEEARIKEEKRLRRKKKEEKARKAERRRKRTEEKRIAQEREQS 249
                  33444445555566666666677777777777666666666555544433 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.9    0.0052        12      67     134 ..     182     249 ..     133     261 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0052
    PF06459.7  67 gdvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkae 134
                  +d+++ +p   ++p+++  +  e  +ee+  k+e     ++++ek  kae   + ++e+ +a+++++ 
  MMETSP0890-20130614|23117_1 182 DDFFSPPPAAASAPQKEETKITENVDEEARIKEEKRLRRKKKEEKARKAERRRKRTEEKRIAQEREQS 249
                  55666555555555555555556666666666666666666666655555555555555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1471  (0.107592); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.98
# Mc/sec: 872.96
//
Query:       MMETSP0890-20130614|23125_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-102  343.1   0.0   1.3e-102  342.9   0.0    1.0  1  PF05958.6  tRNA (Uracil-5-)-methyltransferase
      9e-06   26.1   0.0    1.6e-05   25.3   0.0    1.5  1  PF12847.2  Methyltransferase domain
    5.6e-05   23.0   0.1    0.00013   21.8   0.1    1.6  1  PF13659.1  Methyltransferase domain
      9e-05   21.4   0.1    0.00015   20.7   0.1    1.3  1  PF02390.12 Putative methyltransferase
    0.00014   21.3   0.0    0.00022   20.7   0.0    1.3  1  PF13847.1  Methyltransferase domain
    0.00033   20.1   0.0    0.00062   19.2   0.0    1.4  1  PF09445.5  RNA cap guanine-N2 methyltransferase
    0.00087   18.6   0.0     0.0018   17.6   0.0    1.5  1  PF05175.9  Methyltransferase small domain
     0.0016   17.4   0.0     0.0029   16.5   0.0    1.3  1  PF00398.15 Ribosomal RNA adenine dimethylase
     0.0039   15.9   0.0      0.006   15.3   0.0    1.2  1  PF05219.7  DREV methyltransferase
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.033   14.5   0.0    1.5  1  PF08241.7  Methyltransferase domain
      0.029   13.4   0.0      0.041   12.8   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
      0.084   13.2   0.0       0.17   12.2   0.0    1.6  1  PF08242.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05958.6  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.9   0.0  1.2e-105  1.3e-102       1     351 [.       9     385 ..       9     386 .. 0.93

  Alignments for each domain:
  == domain 1    score: 342.9 bits;  conditional E-value: 1.2e-105
    PF05958.6   1 syeaqleekksrlkkllaefeapele.....vfespdkhyrlraefrlwhegdelyyamfdqetk.kkirvdefeiaselinelmpallaalkqdealreklfqveflstlsgellvsllyhkklddewkeaaealkd........eldvnligrakkkkivl....dkdyveeklkvagr...elvyrqvensftqPnaavnekmleWalevleeskg..dllelycGnGnfslalaekfekvlateiakssveaaqanieankidnvqiirlsaeeltealk.kkrefrrlk..gidlksyefetifvdPPraGldketvklvkkyerilyiscnPetlkenleelsethrverlalfdqfpythhlesGvllek 351
                  +y++ql++k++ lk ++      e e     v++s    +r r +fr+  e+de++++m++++++ +++r+++f+  ++l+n+ mp + ++l+  +alr+++ +  f +tl g  ++ l+y k +  ew e ae l+         e  v l+gr++k ++v+    ++  v+e+l+++     +l+y+q e+ ftqPna+v+ekm++W++e ++ s++  dllelycGnGnfs+ala++f+kvlate++k ++ +a++n   n+++nv+ irl+a+e++eal+ + r+f+rl   +++l++y+f++++vdPPraG++++++kl+ +++ri+y scnPe l+ +l  l++th +++la+fdqfpyt+h+e+G++l+k
  MMETSP0890-20130614|23125_1   9 EYDEQLKNKSASLKGYISRAMGGENEveingVYASSPVLFRQRVNFRVVLENDEVHFVMYSRNSNgQPLRIENFPRGDRLVNAWMPIVRSELNRLPALRRHVIECRFHTTLRGGGMILLCYNKPIGREWLESAELLRTqileatpnEGTVLLVGRSHKLQLVVpecsEEAAVTETLHINTDpplTLQYKQLEGEFTQPNAQVCEKMIQWVIESTKYSNNdkDLLELYCGNGNFSVALAHNFRKVLATELSKHNIVVARHNALVNNLTNVKCIRLAANEVAEALTpGARSFTRLVeqQVQLSDYDFGAVLVDPPRAGVEEAALKLLASFPRIIYFSCNPESLARDLLFLRQTHALDQLAVFDQFPYTEHIECGLILRK 385
                  599***********999876655443223337*******************************9999*********************************************************************99888888887899**********99844445689*******986333799**************************986554349************************************************************97589******6559*****************************************************************************987 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-08   1.6e-05       3      79 ..     229     322 ..     227     360 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.4e-08
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller...................fDavllkg.l 79 
                  k +l+l cG+G++s++la      kv++ ++s++++ +ar na  +++ ++++ ++ +a+e +++l++                   f avl++   
  MMETSP0890-20130614|23125_1 229 KDLLELYCGNGNFSVALAH--NFRKVLATELSKHNIVVARHNA-LVNNLTNVKCIRLAANEVAEALTPgarsftrlveqqvqlsdydFGAVLVDPpR 322
                  5689999************..9999******************.77777999988888877777777778888888888888888777778877644 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.2e-07   0.00013       4      81 ..     231     323 ..     228     365 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.2e-07
    PF13659.1   4 vldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellrags.................fdlvvtnpPyg 81 
                  +l++ cG+G+f +a++++   ++l++El++  + +a++n+  ++l+ +v  ++  + ++ae+l++g+                 f +v+ +pP  
  MMETSP0890-20130614|23125_1 231 LLELYCGNGNFSVALAHNF-RKVLATELSKHNIVVARHNALVNNLT-NVKCIRLAANEVAEALTPGArsftrlveqqvqlsdydFGAVLVDPPRA 323
                  79****************9.9**********999999888888884.555555555555444444333334444444444443399999999975 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.3e-07   0.00015      14      87 ..     222     293 ..     206     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.3e-07
                  TTSGGGB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH..--TTB------HHHHHHHHS- CS
   PF02390.12  14 klfeneqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal..glkNlrilegdaekvleslfa 87 
                  + + n++k +le+ +G+G+f valA ++ +  +l+ E +++ +  v+++ +al  +l+N+++++  a++v e l +
  MMETSP0890-20130614|23125_1 222 TKYSNNDKDLLELYCGNGNFSVALAHNFRK--VLATELSKHNI--VVARHNALvnNLTNVKCIRLAANEVAEALTP 293
                  567778889****************99965..67888888888..444444444599************9988765 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.9e-07   0.00022       3      68 ..     227     290 ..     225     373 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.9e-07
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdiee.lek 68 
                   ++ +l+l CG+G ++ +la++     kv   + s++ i +A+ +a  + ++nv+ i+  ++e +e 
  MMETSP0890-20130614|23125_1 227 NDKDLLELYCGNGNFSVALAHNF---RKVLATELSKHNIVVARHNALVNNLTNVKCIRLAANEvAEA 290
                  67889***************764...46*****************************9999985553 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.5e-07   0.00062       4      83 ..     231     325 ..     228     331 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.5e-07
    PF09445.5   4 vlDlfaGaGGnviqfanvfdkviaieinlsklklaqhNaevYgvsdkitlvlgdvfe...............llaklkleei.vdlvflSpPwGGp 83 
                  +l l++G G  ++++a+ f+kv a e +++++ +a hNa v +   +++++    +e               + ++++l+   +  v++ pP  G+
  MMETSP0890-20130614|23125_1 231 LLELYCGNGNFSVALAHNFRKVLATELSKHNIVVARHNALVNNL-TNVKCIRLAANEvaealtpgarsftrlVEQQVQLSDYdFGAVLVDPPRAGV 325
                  6899***********************************99854.556666555555455777777766653333344444444556666666665 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.5e-06    0.0018      31      91 ..     227     288 ..     196     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.5e-06
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----....--EEE-STT CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen...vevlasdll 91 
                   ++++l+l cG+G  ++ala++  +  v +++ +++ + +a++n+  n+l+n   +++ a+++ 
  MMETSP0890-20130614|23125_1 227 NDKDLLELYCGNGNFSVALAHNFRK--VLATELSKHNIVVARHNALVNNLTNvkcIRLAANEVA 288
                  56679****************9999..***********************99444444445555 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.5e-06    0.0029      17      63 ..     213     260 ..     207     281 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.5e-06
   PF00398.15  17 kvineIldklnlq.ekdtvlEigpGkGalTeeLakrakqvvalEidsk 63 
                  k+i+ +++ ++ + +++ +lE++ G+G+++++La+ +++v a E+ ++
  MMETSP0890-20130614|23125_1 213 KMIQWVIESTKYSnNDKDLLELYCGNGNFSVALAHNFRKVLATELSKH 260
                  566677777777657788**************************9776 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.3e-06     0.006      85     128 ..     220     261 ..     207     282 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.3e-06
    PF05219.7  85 ekespasdqedkklldlGaGdGeitkrvaptfeevyatelsetm 128
                  e  s +   +dk ll+l  G+G+ +  +a  f +v atels++ 
  MMETSP0890-20130614|23125_1 220 E--STKYSNNDKDLLELYCGNGNFSVALAHNFRKVLATELSKHN 261
                  3..44444689******************************865 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.9e-05     0.033       2      46 ..     233     279 ..     232     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.9e-05
    PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle...l 46 
                  ++ cG+g+++ ala++ +++v++++ls+ ++ +a++++  ++l+   +
  MMETSP0890-20130614|23125_1 233 ELYCGNGNFSVALAHN-FRKVLATELSKHNIVVARHNALVNNLTnvkC 279
                  566*************.*******************998887776442 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.6e-05     0.041     157     220 ..     223     285 ..     167     293 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.6e-05
    PF06325.8 157 klvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevallke 220
                  k+ ++++ +l + +G G  ++a a  + +kv+a+ + +  + va++Na +N++++ k+ + l+++
  MMETSP0890-20130614|23125_1 223 KYSNNDKDLLELYCGNGNFSVALAH-NFRKVLATELSKHNIVVARHNALVNNLTNvKC-IRLAAN 285
                  346778899************9775.899***********************999433.555444 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.17       1      60 [.     232     289 ..     232     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00015
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlld 60 
                  Le+ cG+G+++ al+ +    +++++++s++ i  a++    ++  n+++++l a+++ +
  MMETSP0890-20130614|23125_1 232 LELYCGNGNFSVALAHN--FRKVLATELSKHNIVVARHNALVNNLTNVKCIRLAANEVAE 289
                  8999*************..**************999999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:01.02
# Mc/sec: 1064.26
//
Query:       MMETSP0890-20130614|23135_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2    9.9   4.7       0.21    9.9   3.3    1.0  1  PF02994.9  L1 transposable element
       0.24   11.5   2.5       0.28   11.3   1.8    1.1  1  PF03592.11 Terminase small subunit


Domain annotation for each model (and alignments):
>> PF02994.9  L1 transposable element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.3     3e-05      0.21      52     112 ..       2      65 ..       1      87 [. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX...XXXXXXXXXXXXXXXXXXX CS
    PF02994.9  52 vkkdvkkslredveakakevqkvlkelkeiitkqvevlieee...ekslkelmelkkklkelke 112
                  vk+  k++lre  + + ke++ v ++  e + +  e l+ ++   e  lk l  l+k++k+l  
  MMETSP0890-20130614|23135_1   2 VKQRHKRQLREADQVTVKELRVVRRKRSEKMSRAPEGLRAKSpqwEIKLKALLKLNKEIKNLLS 65 
                  78999****************************9999998873224567778888888888744 PP

>> PF03592.11  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   4.1e-05      0.28      55     130 ..       4      77 ..       1      88 [. 0.61

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.1e-05
   PF03592.11  55 erekrtiitadevleelteiargdekeevevgtkelegeveegkkie.kkvklkdklkalellgkhlg.ftdkv......eele 130
                  +r+kr+  +ad+v  +  +++r + +e++          ++  ++ + k+++++ klkal +l k ++ +  ++      +e++
  MMETSP0890-20130614|23135_1   4 QRHKRQLREADQVTVKELRVVRRKRSEKM----------SRAPEGLRaKSPQWEIKLKALLKLNKEIKnLLSRQeagddlDEQQ 77 
                  55555555555555555555555555555..........4666666669*******************9433332453333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 306.20
//
Query:       MMETSP0890-20130614|23140_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-32  109.8   0.2    1.3e-31  109.0   0.1    1.3  1  PF00056.18 lactate/malate dehydrogenase, NAD binding domain
    3.9e-14   52.6   0.0    6.5e-14   51.9   0.0    1.3  1  PF02866.13 lactate/malate dehydrogenase, alpha/beta C-terminal domain
     0.0022   17.2   0.3     0.0048   16.1   0.2    1.5  1  PF02056.11 Family 4 glycosyl hydrolase
     0.0024   17.8   0.1     0.0039   17.1   0.1    1.4  1  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.028   14.3   0.4      0.078   12.8   0.3    1.9  1  PF02254.13 TrkA-N domain
      0.034   13.7   0.0       0.38   10.3   0.0    2.2  2  PF06522.6  NADH-ubiquinone reductase complex 1 MLRQ subunit
      0.054   12.3   0.1       0.11   11.3   0.1    1.5  2  PF03435.13 Saccharopine dehydrogenase
      0.098   11.4   2.4       0.29    9.8   0.4    2.0  2  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF00056.18  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.1   7.8e-35   1.3e-31       5     140 ..       3     140 ..       1     142 [. 0.92

  Alignments for each domain:
  == domain 1    score: 109.0 bits;  conditional E-value: 7.8e-35
                  EE---.----HHH.HHHHHTTTSSEEEEE-SSHHHH---HHHHHTSC..TTTCEEEEEESTHHHHGTTESEEEEB----S----GHHHHHHHHHHHHHHHHHHHHCTSTTSEEEEBSSSHHHHHHHHHHHH---GGGEE CS
   PF00056.18   5 vvGaaGgvGqsla.lllklqglakelaLvDinkekleGvaadlshis..tflsvkkivsekeeealkdadvvvitAgvprkpGetRldLlnkNakIfkelveaiakvapkaivlvvsNPvdilvlvaakvsglpkervi 140
                  vvGa+ +vG s+  + l+ ++ ++el+L+D +  k+eG+++d+ h++  tf+++ k ++++e++ +++advvvitAg++ kp ++RldL ++N +I  +++++++++ap+ai+lvv+NP+di ++++++++  p+erv+
  MMETSP0890-20130614|23140_1   3 VVGAG-AVGVSTChYVLARHSECNELVLIDKDAGKAEGEMLDFGHVQslTFSRNVKLIGSGEYKHCANADVVVITAGAQLKPEQSRLDLAEVNCQIAVSVAQQVEAYAPNAILLVVTNPCDIATYFILRNTTYPPERVM 140
                  89999.***8765156669999***********************9744678888899999**********************************************************************99999987 PP

>> PF02866.13  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   3.8e-17   6.5e-14       3     106 ..     146     247 ..     145     249 .] 0.93

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 3.8e-17
                  HHHHHHHHHHHHH----CCCEB-EEE---STT.EEE.SS.EE--EE-GGGBCCGTS-HHHHHHHHHHHHHC---HHHHHT----HHHHHHHHHHHHHHHHHHH- CS
   PF02866.13   3 LDivRaktflaekagvtprsvkvtviGgHsgsefpdlshakvtiipllsqvkeslklsekqleeliervqkgGdevvkakagsatlsmAvAgakfvkallrdte 106
                   D++R++ +++ k+gv+p++v+ +++G+H++  +  +   +v+++ + + +k    +   +++ l  +v+k++ +++ +k g ++ ++A ++ ++++a+  d++
  MMETSP0890-20130614|23140_1 146 IDSARLRKLVGSKTGVDPKNVNGYILGEHGSNCILPWHVLSVDGQHIDEFCKC-NGMAPFNKDSLLADVKKAAFDIIFRK-GNTAHGIAASISRIIQAISVDEN 247
                  59*********************************************888887.566666899*****************.*****************987776 PP

>> PF02056.11  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.8e-06    0.0048     123     159 ..      97     133 ..      92     142 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.8e-06
                  HHHHHHHHHHHH-TTSEEEE-SS-CHHHHHHHHHHST CS
   PF02056.11 123 vlldiakdieelsPdawvlnytNPaavvteavlrlvp 159
                  + + +a+++e ++P+a +l  tNP  + t  +lr ++
  MMETSP0890-20130614|23140_1  97 IAVSVAQQVEAYAPNAILLVVTNPCDIATYFILRNTT 133
                  56789************************99998764 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.3e-06    0.0039       1      45 [.       2      48 ..       2     110 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.3e-06
    PF13738.1  1 lVvGAGaaGlafadnllee..gatpliivDrnakpGgh.wlkaysfvr 45
                 +VvGAGa+G+   +++l +  ++++l+++D+ a+ +++ +l+++ +v+
  MMETSP0890-20130614|23140_1  2 VVVGAGAVGVSTCHYVLARhsECNELVLIDKDAGKAEGeMLDFG-HVQ 48
                 6************999776558899*****87664433244433.322 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   4.6e-05     0.078       2      38 ..       2      41 ..       1     120 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.6e-05
                 EEE---HHHHHHHCCCHH--.....EEEEES-HHHHHHHH CS
   PF02254.13  2 iiiGlGrvGrslaeeLrege...kdvvvidkdeerveelr 38
                 +++G+G vG s ++++ +++   ++ v+idkd  ++e   
  MMETSP0890-20130614|23140_1  2 VVVGAGAVGVSTCHYVLARHsecNELVLIDKDAGKAEGEM 41
                 8*****************8889*88*******99988655 PP

>> PF06522.6  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00022      0.38      10      49 ..       4      43 ..       3      63 .. 0.86
   2 ?    0.6   0.0      0.24   4.1e+02      19      33 ..     123     137 ..     113     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00022
    PF06522.6 10 fvavgvavgiaafslvRllltnPdVrvnkknrpepwekyk 49
                 ++a +v+v+ + + l+R+  +n  V ++k+  + ++e ++
  MMETSP0890-20130614|23140_1  4 VGAGAVGVSTCHYVLARHSECNELVLIDKDAGKAEGEMLD 43
                 567799************************9999999876 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.24
    PF06522.6  19 iaafslvRllltnPd 33 
                  ia+++++R+ ++ P+
  MMETSP0890-20130614|23140_1 123 IATYFILRNTTYPPE 137
                  89********99987 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.3e-05      0.11       2      72 ..       2      74 ..       1      84 [. 0.77
   2 ?   -2.7   0.0       1.1   1.9e+03     272     322 ..     108     168 ..      99     176 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.3e-05
   PF03435.13  2 lvlGaGsvGqavaellarhgdvd.eitvadrtlekaqalaakalglrveaialdvsnyea.Leallkegdlvv 72
                 +v+GaG vG ++ +++ ++++   e++++d++  ka+ +  + +++   + + +v+   +   ++++ +d+vv
  MMETSP0890-20130614|23140_1  2 VVVGAGAVGVSTCHYVLARHSECnELVLIDKDAGKAEGEMLDFGHVQSLTFSRNVKLIGSgEYKHCANADVVV 74
                 79***********98766665556***********99888877777766666666666666666666666666 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.1
   PF03435.13 272 y..........gppldalsalleskaslgeeeqdkvvirveveGidkdGklltgtiynvyg 322
                  y          +p++ a  ++l +++ + e+ +   +i +  + ++  G++  + ++nv g
  MMETSP0890-20130614|23140_1 108 YapnaillvvtNPCDIATYFILRNTTYPPERVMSTGCIIDSARLRKLVGSKTGVDPKNVNG 168
                  4444444445555555555555555555555555566665555555555555555555555 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00017      0.29       3      31 ..       2      33 ..       1      40 [. 0.75
   2 ?    1.2   0.0     0.071   1.2e+02     191     237 ..      69     111 ..      53     178 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00017
                 EEE----HHHHHHHHHHHTT-...EEEEEESS CS
   PF01266.19  3 viiGgGivGlstAyeLarrgl...kVtllekg 31
                 v++G+G+vG+st ++   r     + +l++k+
  MMETSP0890-20130614|23140_1  2 VVVGAGAVGVSTCHYVLARHSecnELVLIDKD 33
                 9***********99877744334677777776 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.071
                  EEEEEEE----THHHHHCCGTCCTTEEEEEEEEEEEE-TCCHSCCCE CS
   PF01266.19 191 radkvvlAaGawsskllkllgldlpirpvrgqvlvtepltdelaaav 237
                   ad+vv++aGa+ +   ++ +l   +  v  q++v  +++ e  a+ 
  MMETSP0890-20130614|23140_1  69 NADVVVITAGAQLKP--EQSRL--DLAEVNCQIAVSVAQQVEAYAPN 111
                  5699******98877..44444..55555555555554444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.65
# Mc/sec: 917.99
//
Query:       MMETSP0890-20130614|23149_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.63
# Mc/sec: 486.88
//
Query:       MMETSP0890-20130614|23155_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0045   16.7   1.8     0.0075   16.0   1.3    1.3  1  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
  ------ inclusion threshold ------
      0.024   14.7   0.0        5.2    7.2   0.0    2.6  2  PF00169.24 PH domain
      0.099   12.3   0.1       0.18   11.5   0.0    1.5  1  PF08700.6  Vps51/Vps67


Domain annotation for each model (and alignments):
>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3   1.6e-06    0.0075       4     106 ..     199     310 ..     196     325 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-06
    PF06148.6   4 deheFll..pdFdpdqFvselrkgvpLeslrrdLraysklL...kkellelvnedyadFvslSgsLvglqeeleelesplaaarkk....vesvrsklseveeeveskikek 106
                  +++eF++  + F p +F+ +  +  ++ + +  L++   +L   + +l  l+++d+adFv+       l    +++++  +++  k    ++s++ +l+++ +++ s+i++ 
  MMETSP0890-20130614|23155_1 199 QQNEFMIssKHFVPKKFLTSFHHNTTFTQFQLGLHTLRRKLgtqDHRLHALIRDDIADFVQAARDVEALSLLFDNIHKTQSNLHYKhyalIQSTHTSLQARFDHLLSNIDKT 310
                  78999987799********************9999999999554678*************9988877777777777666666554333336666666666666666666555 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0048        22       9      60 ..       9      55 ..       3     164 .. 0.77
   2 ?    7.2   0.0    0.0012       5.2      65     103 ..     336     382 ..     241     383 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0048
                 EEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE.EEEEEEET CS
   PF00169.24  9 kksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc.tvkkasst 60
                 k +++l +wk+r +v  ++ L+y k+ +      p   i ln + +vk + ++
  MMETSP0890-20130614|23155_1  9 KARGRLGNWKNRRLVIGDGELSYGKKGS------PPTRIALNRIiEVKLVNRY 55
                 3348999****************99997......6666666666666655555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0012
                  TTSSSSEEEEEETTT........CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24  65 qkesnnyfeitfkdv........esyllsaeseeerkrWvqalknll 103
                    e++nyf  +++d+        ++y++s +++  ++rW + l++++
  MMETSP0890-20130614|23155_1 336 GGEKKNYFATNNDDErfshspneNKYVFSPPDDHIVSRWRTVLRQAV 382
                  67899999999999999999*99******************999986 PP

>> PF08700.6  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.1e-05      0.18       2      79 ..     206     283 ..     205     291 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.1e-05
    PF08700.6   2 dspdfdaeayvrellakstlkellkveaklrseiraldselkalVydnYskLisasdtIrkmksemekldpklselkq 79 
                  +s+ f +++++++  ++ t  + +    +lr++  + d  l+al+ d   ++++a+ +++ ++  +++++++ s+l+ 
  MMETSP0890-20130614|23155_1 206 SSKHFVPKKFLTSFHHNTTFTQFQLGLHTLRRKLGTQDHRLHALIRDDIADFVQAARDVEALSLLFDNIHKTQSNLHY 283
                  6889999****************************************************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:00.69
# Mc/sec: 1350.99
//
Query:       MMETSP0890-20130614|23202_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.058   12.8   5.0      0.097   12.0   3.5    1.4  1  PF07856.7  Mediator of CRAC channel activity
      0.086   11.9   0.0       0.13   11.3   0.0    1.2  1  PF00326.16 Prolyl oligopeptidase family
        4.8    6.6  12.6        0.2   11.2   2.2    2.1  2  PF07695.6  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> PF07856.7  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.5   2.1e-05     0.097      28     172 ..       3     150 ..       1     154 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.1e-05
    PF07856.7  28 ALlaGFamVal.velqlekdeekpeallvafavvtavlvavhllalvlstciLpnieav.sfvhnlksveesPhrrleryvel..aWr....fstrlGillFlvevvlvawvkfvdvssvvaaiivtailvvvllvfvafalhfyrsllahkt 172
                   ++aGFa   l v  q++  + +++++  +   v+++  a   ++  + tc+L+ + ++  +v+   ++   P  +l+r v++  +W+     s+++G+  F  e +  aw+   +    + a++vt+il +vl++ +++ ++++r l ++k+
  MMETSP0890-20130614|23202_1   3 SIIAGFAFSGLiVGTQFTGISLTNKKITPTNLSVSTLYFAF--ASASIGTCLLACVICTvINVRGPGLALRGPDGSLKRAVDSmrQWQryalYSLTIGVCNFHLEGMTYAWLMLSYR---ANAVTVTVILGFVLILMLLVIYTVFRDLNIMKH 150
                  67999999986367888888877888887777777777765..45567899998776651556666669999********98534797333357888***************99888...889999999999999999888888887766554 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05      0.13     124     187 ..     176     244 ..     156     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.8e-05
                  SHHH.HHHHHHH-GGG---...----EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES--..-- CS
   PF00326.16 124 eneegyeelspyspadnvk...aypplllihGeeDdrvppaealklvaaLqkagknvlllifpde..gH 187
                   n+   +++s y  ++++    ++ ++++ +G++D++   a a+  vaaLq++g+ + l+ + d+   H
  MMETSP0890-20130614|23202_1 176 INPSSGSYISDYGATEQKSttdEEGQIIVGTGLHDSQEDEAVAAAAVAALQQRGSSSFLQPYLDSltAH 244
                  455556688999888887799999******************************997777666643356 PP

>> PF07695.6  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.4     0.073   3.3e+02     157     198 ..       8      53 ..       2      61 .. 0.53
   2 ?   11.2   2.2   4.3e-05       0.2      34      82 ..      90     134 ..      88     154 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.073
    PF07695.6 157 lawlllligvlidilsllg..llpsn.ffte.yllqigvllevlll 198
                  +a++ l++g+ ++ +sl++  + p+n  +++ y+   ++ +   ll
  MMETSP0890-20130614|23202_1   8 FAFSGLIVGTQFTGISLTNkkITPTNlSVSTlYFAFASASIGTCLL 53 
                  4556666666666555555566666655555333333444444444 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 4.3e-05
    PF07695.6  34 Yalyllsfllyllslngllfqylwpnapealnnkllylfllllliffll 82 
                  Yaly l+++++++ l+g+++ +l    +  +   + ++++ l+++++l+
  MMETSP0890-20130614|23202_1  90 YALYSLTIGVCNFHLEGMTYAWLML--S--YRANAVTVTVILGFVLILM 134
                  9**********************33..3..3333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       745  (0.0544909); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 1253.48
//
Query:       MMETSP0890-20130614|23220_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   54.4   0.0    4.9e-14   53.2   0.0    1.6  1  PF04134.7 Protein of unknown function, DUF393


Domain annotation for each model (and alignments):
>> PF04134.7  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   3.6e-18   4.9e-14       1     112 [.      20     138 ..      20     139 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 3.6e-18
    PF04134.7   1 llYDgqCplCakevaflrrldakerlrfvdiqsakdeellkeagidkdqllsvlhlvergevlsgsdAalelwrklpg.......llrllawllrlprirpvldavYrliarnRyrlfg 112
                  +l+Dg+C +C+ +v+fl++ d+++++ f++++s++++ ll++ag++ d++++++++ ++ +v sgsdA l+l   +++       +l +l +llr   ++ ++d +  ++ ++R  +fg
  MMETSP0890-20130614|23220_1  20 VLFDGECHVCDMWVNFLLENDKNDEYCFAALRSEQGQYLLERAGMTTDEFSTMVVVDNDFSVTSGSDALLRLGLTISWsqpitrvILPPLCLLLRTIIPKAIRDSLLAFVWEHRFSIFG 138
                  79*****************************************************844445********99854443322212337778888888888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 695.61
//
Query:       MMETSP0890-20130614|23224_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00025   21.0   0.0     0.0004   20.3   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0021   17.7   0.0     0.0035   17.0   0.0    1.4  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.9e-08    0.0004      10      59 ..      82     130 ..      61     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.9e-08
                  SH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTT CS
   PF00595.19  10 gglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdven 59 
                    lGfsl+  + ++++ + v +++    a+ + l+  D+++++Ng+++++
  MMETSP0890-20130614|23224_1  82 AHLGFSLALTRYQSSTRVLVDKISDSCHAKNQ-LQLQDQVIAINGESIST 130
                  569999999999999*****************.************99975 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.1e-07    0.0035      12      71 ..      82     157 ..      63     170 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.1e-07
    PF13180.1  12 n.............trgvlvvsVkessPaakaglkpGDiilkvdgkkvksl...tdlkslllkkkpG.dtvkltvlR 71 
                                +++vlv ++  s   ak++l+  D++++++g+ ++++   +++ +l+++ k G   +++t+lR
  MMETSP0890-20130614|23224_1  82 AhlgfslaltryqsSTRVLVDKISDSCH-AKNQLQLQDQVIAINGESISTSitkPEFAELIARIKSGpRPLEFTLLR 157
                  0555555555556678888555555554.6666***************55555588888888666662456777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.70
# Mc/sec: 636.75
//
Query:       MMETSP0890-20130614|23225_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-57  192.7   0.0    9.4e-57  192.2   0.0    1.2  1  PF00733.16 Asparagine synthase
    1.3e-23   82.9   0.0    4.6e-23   81.2   0.0    1.9  2  PF13537.1  Glutamine amidotransferase domain
    9.4e-21   74.0   0.0    1.5e-18   66.8   0.0    2.4  1  PF13522.1  Glutamine amidotransferase domain
    7.4e-10   38.0   0.0    1.2e-09   37.3   0.0    1.2  1  PF02540.12 NAD synthase
    0.00013   20.7   0.1       0.67    8.4   0.0    3.7  3  PF00310.16 Glutamine amidotransferases class-II
  ------ inclusion threshold ------
      0.062   12.3   0.0       0.12   11.4   0.0    1.4  1  PF12481.3  Aluminium induced protein


Domain annotation for each model (and alignments):
>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   0.0   4.1e-60   9.4e-57       1     254 [.     275     516 ..     275     517 .. 0.94

  Alignments for each domain:
  == domain 1    score: 192.2 bits;  conditional E-value: 4.1e-60
                  HHHHHHHHHHHHHGGG-SEE-EE-----HHHHHHHHHTT.......TSSEEEEEE---TSS-..-HHHHHHHHHH---EEEE----HHHHH---HHHHHHHT-----HHHHH---HHHHHHH-.---SEEE-----TTT-----------S-HHHHHHHHHHHTTT--...............................-------TT---EEE-TT--HHHHHHHHTB-GGGTEETTEE........SHHHHHHH.....TS-S-HHHHT-- CS
   PF00733.16   1 elrelLkdavkrrlrsdvpvgvllSGGlDSsviaalaar......esdpplktfsvgfeeseadeaglaelvaehlgtehveinvteeellellpevikhleepdatddsigiplylasrlaresgvkvvLsGeGADElfgGysrhrrryesaglegllerellrklrallkaalesekeplereelldeltrlssrnlerddrvsmahglEvRvPflDerlvefalslppelklrlgle........KliLReaa.....eellpeeilerp 254
                  e+r+ L++av++r++sdv +g++lSGG+DS ++a l+        + +  l +f+vg+e+s+  ++ +a+++a++lgteh e ++t +e+l ++++v++h+e+++a  ++++ip +++++la  ++vk+vL+GeGADEl +Gy    +++ +a+++ +++                        +el++  + l + nl r dr+++ah+lE+RvPflD +  + a+++ p+lk   g          K +LR+ +        +p+++l+r 
  MMETSP0890-20130614|23225_1 275 EIRQSLDQAVEKRMMSDVAFGLFLSGGIDSCIVAQLMLNhhrkknKPNATLPSFTVGMENSP--DLMAARAMAKELGTEHNEKIFTIDEALSVIDQVVYHMETYNAELIRSAIPNWFLAQLAA-KQVKMVLTGEGADELWAGY----AYFADAPNPSSVH------------------------QELIRIYNFLGKANLLRTDRITSAHSLEARVPFLDTQNTSTAMEIHPRLKHTAGVLgpkgepgeKMFLRKCFerqhgGVTIPKDLLYRA 516
                  689**********************************99999999889999***********..***********************************************************.*******************....*********9999........................58999999******************************************99888899************9944333335666666665 PP

>> PF13537.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.9   2.1e+03       1      18 [.      78      97 ..      78     119 .. 0.68
   2 !   81.2   0.0     2e-26   4.6e-23      23     123 ..     128     230 ..     114     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.9
    PF13537.1  1 hrrlai..idseagaqPmvs 18
                 h rlai   + ea aqP++ 
  MMETSP0890-20130614|23225_1 78 HARLAIvaPNEEAAAQPFHL 97
                 78999977788899999984 PP

  == domain 2    score: 81.2 bits;  conditional E-value: 2e-26
    PF13537.1  23 rvvivfnGeiyNykelreeleakgykfrtesDtevllalleeleggeealkrl..nGmfAfalwdkkek...rlllaRDrlGikpLyygkde.gdallfaSelkall 123
                  ++++++nGeiy +kel + l+ k    +++sD+ev+ +l++e  g +e+ krl   GmfAfal+d++e    +l++aRD+ GikpLyyg d+ g+  ++aSelk l+
  MMETSP0890-20130614|23225_1 128 EIACAANGEIYTHKELFQGLQGK---PTGHSDCEVVPHLYAE-LGPAETAKRLidAGMFAFALIDAREPlnpKLYAARDPTGIKPLYYGVDRaGRICALASELKGLQ 230
                  6899****************985...79*************9.5888888888556*********9988788********************99999*******986 PP

>> PF13522.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   6.7e-22   1.5e-18       1     133 []      63     225 ..      63     225 .. 0.83

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 6.7e-22
    PF13522.1   1 pdasglaslvdsevvlgHvRlatvglseeegaqPf...ssedgr........................vvlvhNGeiynyeelreelpakglafrtrsDsevllallkewG.ekalerl..dgmfafaiwdk.rekkllla..rdrlgikpLyygkt..gdrllfase 133
                  pd++g+  + + + +lgH+Rla+v ++ee++aqPf    +++++                        ++ + NGeiy+++el + l+ k     ++sD ev+ +l++e+G +++++rl  +gmfafa++d+ ++ +  l+  rd +gikpLyyg++  g+  + ase
  MMETSP0890-20130614|23225_1  63 PDGQGY--VAGYGWALGHARLAIVAPNEEAAAQPFhlaINPENGlimdavetkhtfesidlskplqpeIACAANGEIYTHKELFQGLQGKPT---GHSDCEVVPHLYAELGpAETAKRLidAGMFAFALIDArEPLNPKLYaaRDPTGIKPLYYGVDraGRICALASE 225
                  789999..99999**************88888***8875555556888888888888888888888888*******************9554...5***************988886663346*********75544333336*************987777778876 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   5.2e-13   1.2e-09       2     138 ..     273     415 ..     272     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 5.2e-13
                  HHHHHHHHHHHHHHSTT-EEEE-..-----HHHH---HHHHHHTCGCEEEEE---S...STTHHHHHHHHHHHHHCTSEE..EE---HHHHHHHHHHHHHH-.TTT---HHHHHHHHHHHHHHHHHT-EB-----HHHHH---- CS
   PF02540.12   2 ieelvdflkeyvkksgakgvvlG..lSGGvDSalvaalavkalgkenvlalimPss...vsseedvedalalaeklgies..ktidikeivaafseeleeekeklakgNlkaRiRmillyaianklnllvlgTsnksEllvGyf 138
                  i+e+ ++l + v+k+ ++ v +G  lSGG+DS +va+l  +   k+n     +Ps    ++++ d+ +a+a+a++lg e   k + i+e+++++++ + + + + +++ +++ i   +l + a k+ ++vl  + + El  Gy 
  MMETSP0890-20130614|23225_1 273 IDEIRQSLDQAVEKRMMSDVAFGlfLSGGIDSCIVAQLMLNHHRKKNKPNATLPSFtvgMENSPDLMAARAMAKELGTEHneKIFTIDEALSVIDQVVYHME-TYNAELIRSAIPNWFLAQLAAKQVKMVLTGEGADELWAGYA 415
                  6789999****************555****************************6411145677999*********9865226799****999999777766.89999**********************************95 PP

>> PF00310.16  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.017        39       1      52 [.      29      76 ..      29     103 .. 0.64
   2 !    8.4   0.0   0.00029      0.67     199     242 ..      76     152 ..      71     175 .. 0.68
   3 !    5.6   0.0    0.0021       4.8     321     357 ..     180     221 ..     169     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.017
                 ---.--EE.......CSCCHHHHHCCEGGGTT----TSB..-BE-EEEE--HHH CS
   PF00310.16  1 Cgv.Gvvadikgka.srkvvekalealerLehRGgvdgntGDgaGilvqipeef 52
                 Cg+ +++   +++a sr  ++ + +a+++++hRG       Dg G + + ++++
  MMETSP0890-20130614|23225_1 29 CGIiACLEFGENEAlSRCSPQVVEKAVKKISHRGP------DGQGYVAGYGWAL 76
                 77766665444444144555666678999*****9......8888888777774 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00029
                  EB--C--SSSS-SCTTSSSEE.................................EEEEE---TTHHHHHHHHHHHCT CS
   PF00310.16 199 ivHvRfsTntspswenahPfr.................................vlahNGeintikgnknllkaree 242
                  ++H R +     +  +a+Pf                                  + a NGei+t+k++ + l+ + +
  MMETSP0890-20130614|23225_1  76 LGHARLAIVAPNEEAAAQPFHlainpenglimdavetkhtfesidlskplqpeiACAANGEIYTHKELFQGLQGKPT 152
                  556666666666666666666665555555555555555555666666655888999**********9998886655 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0021
                  --EEEEEEETT.....EEEECS-EEEEEESEEEEETTEEEEE CS
   PF00310.16 321 Gpaaivftdgk.....kvgasldrnglRparygitedglvvv 357
                  G++a++++d +     k++a++d+ g++p+ yg+ + g++  
  MMETSP0890-20130614|23225_1 180 GMFAFALIDAReplnpKLYAARDPTGIKPLYYGVDRAGRICA 221
                  99999999988666657*****************98887654 PP

>> PF12481.3  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.4e-05      0.12     130     202 ..     179     255 ..     166     272 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.4e-05
    PF12481.3 130 eGsfafvlyDkk...aktvfvaldadgkvplfWGiaadgsv.vlsddvelikk..sCgksfapFPkGclfssegglksf 202
                   G faf l D++   +  +++a d +g  pl++G++  g++ +l+ +++ +++  + +k f  FP+G +   +  +  +
  MMETSP0890-20130614|23225_1 179 AGMFAFALIDAReplNPKLYAARDPTGIKPLYYGVDRAGRIcALASELKGLQDipGIIKMF-EFPNGHYLYQH-KFYQY 255
                  599*******97233568******************9998736889999998743555665.79999765544.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.97u 0.40s 00:00:01.37 Elapsed: 00:00:00.89
# Mc/sec: 1599.37
//
Query:       MMETSP0890-20130614|23237_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   13.3   1.8      0.034   13.3   1.3    2.2  2  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.013   1.8e+02      21      26 ..      87      92 ..      86      95 .. 0.45
   2 ?   13.3   1.3   2.5e-06     0.034      13      27 ..     101     115 .]     100     115 .] 0.54

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.013
    PF04886.7 21 qPTdqP 26
                 +PT +P
  MMETSP0890-20130614|23237_1 87 EPTPEP 92
                 344443 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.5e-06
    PF04886.7  13 qPTgqPtaqPTdqPt 27 
                  qPT  P+ +PT +Pt
  MMETSP0890-20130614|23237_1 101 QPTLKPSQEPTHKPT 115
                  555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 417.55
//
Query:       MMETSP0890-20130614|23279_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   31.2   0.0    2.4e-07   30.8   0.0    1.2  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.025   14.1   0.1      0.031   13.8   0.0    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   3.6e-11   2.4e-07       4      98 ..      52     157 ..      49     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 3.6e-11
                  EEEEEEEES.--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EESCECECTSTT.EEEEEEEEHHCCCE--..-GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   4 qlrvnrYpp.pekglglgpHtDne.........nriltillq....ddggglqfrkedkwidvppdpv.allvnfgdvllvltng..ryksvlHrvlpntrgeRislafflr 98 
                   ++v +Y+  +e    ++pH+D +          r++t+ll+    + gg + f++    + + p+p+ a+ +  +d    +t g     +++H ++p+ +g +++++++lr
  MMETSP0890-20130614|23279_1  52 PFSVIYYNGsKELPDEYRPHCDGAcdgsphlhgGRVATLLLYcqtaTRGGITTFTNA--RTVAAPQPNdAVFFSYFD----MTSGlmDTGQTTHSGCPVLEGDKFVATLWLR 157
                  678999999999*********************************888888888855..566667776688888888....44441145689******************97 PP

>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.5e-06     0.031      85     136 ..      54     112 ..      18     122 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.5e-06
                  SGGG----......--SB-S-TTSSS----......EEEEEEE-------EEEB---HHH CS
   PF02668.11  85 daaytped..ttralplHtDlsylesppgv......qlLhclenpaeGGetlfvdgfaay 136
                  ++ y++ +    ++++ H+D++ + sp          lL+c ++ ++GG t+f + ++++
  MMETSP0890-20130614|23279_1  54 SVIYYNGSkeLPDEYRPHCDGACDGSPHLHggrvatLLLYCQTA-TRGGITTFTNARTVA 112
                  33333333333337********9887766677778789999998.************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.80
# Mc/sec: 557.15
//
Query:       MMETSP0890-20130614|23286_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   15.8   0.0      0.014   15.3   0.0    1.2  1  PF08983.5 Domain of unknown function (DUF1856)


Domain annotation for each model (and alignments):
>> PF08983.5  Domain of unknown function (DUF1856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-06     0.014      16      39 ..      13      36 ..      12      38 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1e-06
    PF08983.5 16 lLTkltnrsptnstdawkdlcasP 39
                 l+++++n s+t+    wk +++ P
  MMETSP0890-20130614|23286_1 13 LYSRIHNESTTDVYKRWKMPNDTP 36
                 79*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 173.98
//
Query:       MMETSP0890-20130614|23292_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.067   12.5   0.0       0.19   11.0   0.0    1.6  2  PF02081.10 Tryptophan RNA-binding attenuator protein


Domain annotation for each model (and alignments):
>> PF02081.10  Tryptophan RNA-binding attenuator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.17   2.3e+03      40      57 ..      44      61 ..      32      68 .. 0.74
   2 ?   11.0   0.0   1.4e-05      0.19      36      69 ..      81     116 ..      77     119 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.17
   PF02081.10 40 kGevliaqftehtsaikv 57
                 +G+v++ ++ e  + +kv
  MMETSP0890-20130614|23292_1 44 EGDVILYRLGEEDTQLKV 61
                 578888888777777766 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.4e-05
   PF02081.10  36 ekLdkGevliaqftehtsaikvrGka..eiqtkyGe 69 
                  e Ld+Ge++    +++ +ai+++G+a   i+  yG+
  MMETSP0890-20130614|23292_1  81 EPLDAGEIVFFEDAQVDTAIQIQGTAvaVIESLYGQ 116
                  88**********************972257778886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|23296_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:01.07
# Mc/sec: 1115.31
//
Query:       MMETSP0890-20130614|23311_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-36  123.9   0.1    1.5e-35  121.2   0.1    1.9  1  PF01981.11 Peptidyl-tRNA hydrolase PTH2


Domain annotation for each model (and alignments):
>> PF01981.11  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.1   1.1e-39   1.5e-35       2     115 ..      67     188 ..      66     189 .] 0.92

  Alignments for each domain:
  == domain 1    score: 121.2 bits;  conditional E-value: 1.1e-39
                  EEEEEEEESSS........SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEESSHHHHHHHHHHHHHTT---EEEE----TSS----EEEEEE-EEEHHHHHCC----EE CS
   PF01981.11   2 lkmvlvvrkdl........kmgkGKiaaqcaHAavaavekvekkkkellkaWlkegqkKvvlkveseeellelaekakseglpaavirDagrtqiapgsktvlavgpapkelvdkvtgkLkl 115
                  +km l+v+ +l        km+ GK+aaqc+HA+++a+++++k+++++++aW  +gq+Kv++kv++eeel++l+   k++g+p+++++Dagrtq+apgs+tvla gpap + +d+ t +Lkl
  MMETSP0890-20130614|23311_1  67 YKMLLCVNMELkdengkatKMKPGKMAAQCCHACLGAYRAASKRAPSAVRAWALTGQAKVCVKVPTEEELEKLRLILKEHGIPYYLVEDAGRTQVAPGSRTVLAAGPAPVKILDQFTSHLKL 188
                  78888888877333333336*****************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 603.88
//
Query:       MMETSP0890-20130614|23315_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 273.87
//
Query:       MMETSP0890-20130614|23323_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   14.6   0.1      0.022   14.1   0.1    1.3  1  PF10419.4 TFIIIC subunit


Domain annotation for each model (and alignments):
>> PF10419.4  TFIIIC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.6e-06     0.022       2      33 ..      43      74 ..      43      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-06
    PF10419.4  2 qisGLdtdnPilkigdklyeGtweetiGTela 33
                 q+s+L    Pil+ +++  +G  ee +GT+++
  MMETSP0890-20130614|23323_1 43 QLSDLNGVAPILQLDNTTISGRVEEPLGTQYI 74
                 788899999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.43s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 320.69
//
Query:       MMETSP0890-20130614|23327_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 154.05
//
Query:       MMETSP0890-20130614|23332_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 322.27
//
Query:       MMETSP0890-20130614|23343_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-19   68.3  17.3      2e-09   36.8   0.6    3.5  3  PF06677.7  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
  ------ inclusion threshold ------
      0.013   15.0   3.9      0.066   12.8   0.1    3.6  4  PF03119.11 NAD-dependent DNA ligase C4 zinc finger domain
       0.64    9.4   8.8       0.39   10.1   0.1    2.7  2  PF01396.14 Topoisomerase DNA binding C4 zinc finger
        1.1    9.1   9.3         10    6.0   0.2    3.8  4  PF04828.9  Glutathione-dependent formaldehyde-activating enzyme


Domain annotation for each model (and alignments):
>> PF06677.7  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.4     0.005        17      16      40 ..       1      28 [.       1      29 [. 0.80
   2 !   35.3   1.9   1.8e-12     6e-09       4      40 ..      84     123 ..      81     124 .. 0.84
   3 !   36.8   0.6   5.9e-13     2e-09       5      38 ..     161     193 ..     159     197 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.005
    PF06677.7 16 LdehCpk..CgtpLfrlkdg.kvfCpiC 40
                 L+e+Cp+  C+tpL+   dg ++ C+ C
  MMETSP0890-20130614|23343_1  1 LAETCPIrgCSTPLVVSPDGrQTWCAMC 28
                 899***777*****99666626789988 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 1.8e-12
    PF06677.7   4 kmaelLlkGatMLdehCpkCgtpLfr..lkd.gkvfCpiC 40 
                  +m+  Ll+G tML+e+C+kC tpLfr   kd  ++fC  C
  MMETSP0890-20130614|23343_1  84 RMGTKLLRGWTMLEESCDKCMTPLFRspKKDeEELFCCGC 123
                  8*************************94444245799888 PP

  == domain 3    score: 36.8 bits;  conditional E-value: 5.9e-13
    PF06677.7   5 maelLlkGatMLdehCpkCgtpLfrlkdgkvfCp 38 
                  +++ Ll G  ML+e+CpkC  pL+r k+ +++C+
  MMETSP0890-20130614|23343_1 161 LSRHLLDGWAMLAETCPKCHSPLMR-KQETTLCV 193
                  7899*********************.*******9 PP

>> PF03119.11  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.36   1.2e+03       5      11 ..      10      16 ..       4      24 .. 0.70
   2 ?   12.8   0.1   1.9e-05     0.066       1      14 [.     175     188 ..     175     191 .. 0.90
   3 ?   -1.6   0.0       0.6     2e+03       7      16 ..     203     212 ..     203     214 .. 0.82
   4 ?    0.4   0.0      0.14   4.9e+02       4      13 ..     300     309 ..     300     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.36
   PF03119.11  5 Cgsplvr 11
                 C +plv 
  MMETSP0890-20130614|23343_1 10 CSTPLVV 16
                 9999984 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.9e-05
   PF03119.11   1 tCPvCgsplvreeg 14 
                  tCP C+spl r+ +
  MMETSP0890-20130614|23343_1 175 TCPKCHSPLMRKQE 188
                  8*********9865 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.6
   PF03119.11   7 splvreegev 16 
                  sp+v++++ v
  MMETSP0890-20130614|23343_1 203 SPVVEKNDNV 212
                  89**999876 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.14
   PF03119.11   4 vCgsplvree 13 
                  +Cgs l   e
  MMETSP0890-20130614|23343_1 300 SCGSTLAATE 309
                  7****98666 PP

>> PF01396.14  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.6     0.065   2.2e+02       2      27 ..      98     126 ..      97     126 .. 0.82
   2 ?   10.1   0.1   0.00011      0.39       2      15 ..     174     187 ..     173     190 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.065
   PF01396.14   2 ekCPkCggklvlkrgkkG...kFvGCsnY 27 
                  e C+kC  +l    +k        GC++Y
  MMETSP0890-20130614|23343_1  98 ESCDKCMTPLFRSPKKDEeelFCCGCDRY 126
                  78********9999988888444699988 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00011
   PF01396.14   2 ekCPkCggklvlkr 15 
                  e+CPkC ++l+ k+
  MMETSP0890-20130614|23343_1 174 ETCPKCHSPLMRKQ 187
                  79********9997 PP

>> PF04828.9  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.27   9.3e+02      47      68 ..      21      40 ..       8      63 .. 0.68
   2 ?    5.6   0.6    0.0038        13      45      67 ..      94     116 ..      79     123 .. 0.75
   3 ?    6.0   0.2     0.003        10      45      78 ..     170     200 ..     145     211 .. 0.72
   4 ?   -2.3   0.0       1.2     4e+03      53      62 ..     300     310 ..     299     327 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.27
    PF04828.9 47 sryfCpeCgsplyaeeseapel 68
                 +++ C  C  ++++   +++e+
  MMETSP0890-20130614|23343_1 21 RQTWCAMCVMEVIS--ADSDEK 40
                 45778888888884..344444 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0038
    PF04828.9  45 kvsryfCpeCgsplyaeeseape 67 
                  ++ ++ C +C +pl+ + ++++e
  MMETSP0890-20130614|23343_1  94 TMLEESCDKCMTPLFRSPKKDEE 116
                  566789*********76555555 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.003
    PF04828.9  45 kvsryfCpeCgsplyaeeseapelvivrlgtldd 78 
                   +  + Cp+C spl+   +++++++ v+ +++++
  MMETSP0890-20130614|23343_1 170 AMLAETCPKCHSPLM---RKQETTLCVQDSCINE 200
                  566689*********...3555667777777775 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.2
    PF04828.9  53 eCgsplyae.e 62 
                  +Cgs+l+a+ +
  MMETSP0890-20130614|23343_1 300 SCGSTLAATeD 310
                  69999996532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1029.20
//
Query:       MMETSP0890-20130614|23351_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.75
# Mc/sec: 1048.01
//
Query:       MMETSP0890-20130614|23387_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-08   31.7   0.2    9.2e-07   28.3   0.0    2.4  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.045   6.2e+02      64      90 ..       4      30 ..       2      36 .. 0.53
   2 !   28.3   0.0   6.7e-11   9.2e-07       5      82 ..      44     163 ..      40     166 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.045
                 G---HHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22 64 yrGllpnllrvvpaaaikfvtyetlkk 90
                 y G  +    + + +  +fvt++ l k
  MMETSP0890-20130614|23387_1  4 YTGAYAMAAATLIGHFPWFVTFNLLDK 30
                 555555555555555555555555555 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 6.7e-11
                  HHHHHH----HHHCCHHHCHHHHHHHHHHH.........................................-SS--GCGS----HHHHHHHHHH---.GGGG---HHHHHHHHHHHHHHH CS
   PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlq.........................................ksaasasskykgildalkkiykeeGi.rglyrGllpnllrvvpaaaikf 82 
                  +l+s+++G  + ++++lv +P+ v+Kt  q                                         ++++++  ++++   ++++i++++Gi   l rGl++++l + +++++  
  MMETSP0890-20130614|23387_1  44 ALRSAFIGFSSSLVSDLVSNPIRVIKTTKQstaaaaalssiqlpkisqkttstinnnlknernnispttskQDETQSLPSNSSYAAIISHIIRTDGIsAFLTRGLSTRILVNGLQSMVFT 163
                  68999************************************9999999999999999999999888888754444444566777777**********44568*********999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       957  (0.0699971); expected 273.4 (0.02)
Passed bias filter:                      605  (0.044251); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.45s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 563.65
//
Query:       MMETSP0890-20130614|23389_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   16.7   3.1     0.0037   16.6   2.1    1.0  1  PF05335.8 Protein of unknown function (DUF745)
  ------ inclusion threshold ------
      0.032   12.6   4.3      0.036   12.5   3.0    1.0  1  PF05701.6 Plant protein of unknown function (DUF827)
       0.04   12.4   2.5      0.042   12.4   1.8    1.0  1  PF08317.6 Spc7 kinetochore protein
      0.069   12.7   3.9       0.12   11.9   2.7    1.3  1  PF07926.7 TPR/MLP1/MLP2-like protein
        0.1   12.1   1.7       0.17   11.4   1.2    1.4  1  PF08286.6 Spc24 subunit of Ndc80
       0.39   10.1   5.1       0.47    9.8   3.5    1.1  1  PF04156.9 IncA protein
       0.79    9.6   3.9       0.37   10.7   0.3    2.1  2  PF08898.5 Domain of unknown function (DUF1843)
        1.2    8.9   4.0       0.59    9.9   1.0    1.9  3  PF04508.7 Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> PF05335.8  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.1   2.2e-06    0.0037     107     166 ..      11      70 ..       3      72 .] 0.92

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.2e-06
    PF05335.8 107 aqkqlktlkallkeaqenleniekvaseaqqelaektqLleaAkkrvevlerqlkearkD 166
                  a ++ + ++ +l +aq+++ +i ++a+++ qe+ + ++ l+a ++r+ ++e+ l++ + D
  MMETSP0890-20130614|23389_1  11 AREENQNIRDALSKAQAEIVEITSSANGWHQEATSLRAELDAERARLLEVEKSLQDQQRD 70 
                  56778899***********************************************99887 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.0   2.1e-05     0.036     338     395 ..      11      68 ..       2      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
    PF05701.6 338 areelvelslklqqlsseaeeakkeAeeareeveklkeeaeqtkaaleeaelrLeaal 395
                  aree +++   l +++ e  e  + A+  ++e+++l++e ++ +a+l e+e+ L+ ++
  MMETSP0890-20130614|23389_1  11 AREENQNIRDALSKAQAEIVEITSSANGWHQEATSLRAELDAERARLLEVEKSLQDQQ 68 
                  6889999999999999999999999999999999999999999999999999998665 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.8   2.4e-05     0.042     207     265 ..      11      69 ..       3      72 .] 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-05
    PF08317.6 207 dseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaek 265
                   +ee +++r+ Ls+ + +i e +++ +  ++e  +l ++++a +  + e++++++++++
  MMETSP0890-20130614|23389_1  11 AREENQNIRDALSKAQAEIVEITSSANGWHQEATSLRAELDAERARLLEVEKSLQDQQR 69 
                  678899*************************************************9987 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.7   7.1e-05      0.12      64     113 ..      18      68 ..      11      71 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.1e-05
    PF07926.7  64 lkkelaelqkeaselrkeadsakaelneleekweeeksm.Levelselekk 113
                  ++ +l+++q+e+ e++++a+  ++e   l+++   e+++ Leve+s   ++
  MMETSP0890-20130614|23389_1  18 IRDALSKAQAEIVEITSSANGWHQEATSLRAELDAERARlLEVEKSLQDQQ 68 
                  455555555555555555555555555555555544443124444433333 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2    0.0001      0.17       3      46 ..      24      67 ..      12      72 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
    PF08286.6  3 eldnekvrlakelndleselenlqseleelkeeleeleeqeneg 46
                 +   e v++   +n   +e ++l++el+  +++l e+e++++++
  MMETSP0890-20130614|23389_1 24 KAQAEIVEITSSANGWHQEATSLRAELDAERARLLEVEKSLQDQ 67
                 45567788888899999999999999999999999999988882 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00028      0.47     108     185 ..       5      68 ..       1      71 [. 0.52

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00028
    PF04156.9 108 eseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelq 185
                  ++ l+  +e++++++ +l++ ++++ ++++s     +e + lr               el++++++l +++++l+++q
  MMETSP0890-20130614|23389_1   5 TAALLFAREENQNIRDALSKAQAEIVEITSSANGWHQEATSLR--------------AELDAERARLLEVEKSLQDQQ 68 
                  5555555555666666666666666666666666666655555..............444444444444444444444 PP

>> PF08898.5  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00021      0.37      29      47 ..      11      29 ..       4      35 .. 0.91
   2 ?    0.1   0.1      0.45   7.7e+02      36      45 ..      46      52 ..      32      67 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00021
    PF08898.5 29 qlaeadelaaAlekLkaEI 47
                 +++e+++++ Al+k++aEI
  MMETSP0890-20130614|23389_1 11 AREENQNIRDALSKAQAEI 29
                 5799**************9 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.45
    PF08898.5 36 laaAlekLka 45
                 l+a+l+   a
  MMETSP0890-20130614|23389_1 46 LRAELD---A 52
                 343333...3 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9   4.9e+03       9      12 ..      17      20 ..      12      24 .. 0.51
   2 ?   -2.9   0.0       4.6   7.8e+03       3      10 ..      22      29 ..      20      31 .. 0.69
   3 ?    9.9   1.0   0.00035      0.59       2      19 ..      49      66 ..      48      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.9
    PF04508.7  9 kIsd 12
                 +I+d
  MMETSP0890-20130614|23389_1 17 NIRD 20
                 3443 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4.6
    PF04508.7  3 ldrlRrkI 10
                 l +++ +I
  MMETSP0890-20130614|23389_1 22 LSKAQAEI 29
                 56777777 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00035
    PF04508.7  2 EldrlRrkIsdLekqLsd 19
                 Eld +R ++ + ek+L d
  MMETSP0890-20130614|23389_1 49 ELDAERARLLEVEKSLQD 66
                 9***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       820  (0.0599766); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.93
# Mc/sec: 185.52
//
Query:       MMETSP0890-20130614|23395_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   14.4   0.5     0.0097   14.3   0.4    1.0  1  PF05918.6 Apoptosis inhibitory protein 5 (API5)
  ------ inclusion threshold ------
        0.1   11.1   0.1       0.13   10.7   0.0    1.1  1  PF06990.6 Galactose-3-O-sulfotransferase
        7.7    6.9  14.1         35    4.8   8.9    2.2  2  PF13865.1 C-terminal duplication domain of Friend of PRMT1


Domain annotation for each model (and alignments):
>> PF05918.6  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   2.1e-06    0.0097     459     554 ..      28     139 ..       5     141 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-06
    PF05918.6 459 lsWivakk....aklgkkhapitfl...............ndavqaksilekraanGkgknvaakksrvsndqkqlvnkssegiskvgasyrgrgrtrgr.GrrsGGGrGrGrnrg 554
                  l W ++ k      +gk  ++i f                 +++ a s l ++  n  + ++a kk ++ ++ k  +++ +e   ++    r  gr   r Gr++ GGrGr r r+
  MMETSP0890-20130614|23395_1  28 LNWCMPDKshtrRSFGKGDDSIVFSksqldaiaeinhydaRLYSFADS-LAQAIQNNLDIQQAPKKCKPGGKMKIASPPGAEDGGRGV---RRAGRDARRgGRKGRGGRGRRRMRR 139
                  555555442222444555555555566666666666555334444444.345666999999**********99999999877655544...4555554440666679999998776 PP

>> PF06990.6  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.9e-05      0.13     238     302 ..       7      71 ..       2      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.9e-05
    PF06990.6 238 rfrlvliaeyldeslvllrrllaWelddvlyfklnaraassvarlsaelaeraraWnaldarlye 302
                   f++v+i e ld+s+  l ++l W + d    +    +      +s  + ++    n  darly 
  MMETSP0890-20130614|23395_1   7 SFQVVMILERLDNSFQQLYHKLNWCMPDKSHTRRSFGKGDDSIVFSKSQLDAIAEINHYDARLYS 71 
                  69************************999888766544444455777777777788999999996 PP

>> PF13865.1  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.11     5e+02      30      49 ..      39      58 ..      32      85 .. 0.77
   2 ?    4.8   8.9    0.0076        35       6      36 ..     109     138 ..      96     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.11
    PF13865.1 30 RkgrgkkkkrkkvtredLDk 49
                 R++ gk++++   ++ +LD+
  MMETSP0890-20130614|23395_1 39 RRSFGKGDDSIVFSKSQLDA 58
                 34467778899999999996 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0076
    PF13865.1   6 gsrggkfrprgrgarrgrsrgrggRkgrgkk 36 
                   +++g +r  gr arrg+++grggR++r+ +
  MMETSP0890-20130614|23395_1 109 DGGRGVRR-AGRDARRGGRKGRGGRGRRRMR 138
                  34444444.6667777777776766665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.86
# Mc/sec: 395.68
//
Query:       MMETSP0890-20130614|23437_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-31  108.9   1.7    8.4e-17   61.1   0.0    2.4  2  PF12796.2  Ankyrin repeats (3 copies)
    6.9e-24   83.6   0.3    9.4e-08   32.2   0.0    3.3  3  PF13637.1  Ankyrin repeats (many copies)
    2.3e-21   75.1   0.6    7.5e-09   35.4   0.0    4.7  5  PF13857.1  Ankyrin repeats (many copies)
    4.9e-21   73.3   3.0    5.3e-06   25.8   0.0    4.6  5  PF00023.25 Ankyrin repeat
    5.6e-21   72.4   0.2    0.00057   19.7   0.0    5.3  5  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
       0.14   10.5   0.0       0.18   10.2   0.0    1.1  1  PF06501.6  Human herpesvirus U55 protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   3.7e-20   8.4e-17       1      89 []      46     139 ..      46     139 .. 0.97
   2 !   53.9   0.3   6.4e-18   1.5e-14       3      84 ..     115     199 ..     113     203 .. 0.95

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 3.7e-20
    PF12796.2   1 LhlAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                  L+ A+eng+ + +k  +++g d+++     g t+L lA+e+g++ iv++Ll+ +ad + +d  g+++ ++A+ ++h+ +v+lLl+kgad+ ++d
  MMETSP0890-20130614|23437_1  46 LFDAIENGDNDEIKRYIDMGFDINVidpedGYTALLLACEQGHTTIVEMLLAGEADYEIRDSFGRSAVYAAAVANHAQVVDLLLKKGADPTIQD 139
                  5679************************99999*********************************************************9876 PP

  == domain 2    score: 53.9 bits;  conditional E-value: 6.4e-18
    PF12796.2   3 lAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgad 84 
                   Aa  +++++v+lLl+kgad+++    g+ p  + ++  +l+i+++L+e+  d+n+ d +g+tp+ +A+ +gh++++++L e+ga 
  MMETSP0890-20130614|23437_1 115 AAAVANHAQVVDLLLKKGADPTIqdddGRDPFWAVCALRHLDIARMLVER-VDINTHDLSGETPMDHAAAAGHADVMNFLKEHGAT 199
                  6999******************98888888*******************8.9********************************95 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.1e-11   9.4e-08       5      54 .]      46      96 ..      45      96 .. 0.97
   2 !   30.3   0.1   1.6e-10   3.7e-07       1      54 []     109     162 ..     109     162 .. 0.95
   3 !   23.2   0.1   2.8e-08   6.4e-05      11      53 ..     152     193 ..     150     193 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.1e-11
    PF13637.1  5 LhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54
                 L+ a+  g+ + +k  ++ g din + +e+G taL +A++ g+  i+++Ll
  MMETSP0890-20130614|23437_1 46 LFDAIENGDNDEIKRYIDMGFDINVIdPEDGYTALLLACEQGHTTIVEMLL 96
                 7999**********************99**********************8 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.6e-10
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  g++a+  aa +++ ++v lLl+kg+d+  +d++G+ ++  ++   +++i+++L+
  MMETSP0890-20130614|23437_1 109 GRSAVYAAAVANHAQVVDLLLKKGADPTIQDDDGRDPFWAVCALRHLDIARMLV 162
                  5789999999******************************************96 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 2.8e-08
    PF13637.1  11 sgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                    +l++++ L+e ++din  d sG+t+++ Aa +g+ ++ ++L
  MMETSP0890-20130614|23437_1 152 LRHLDIARMLVE-RVDINTHDLSGETPMDHAAAAGHADVMNFL 193
                  569999*****6.8*************************9998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.027        62      22      46 ..      48      72 ..      32      75 .. 0.86
   2 !   35.4   0.0   3.3e-12   7.5e-09       3      56 .]      63     116 ..      61     116 .. 0.87
   3 !   22.2   0.0   4.6e-08   0.00011      16      52 ..     109     145 ..     108     146 .. 0.91
   4 !   13.7   0.0   2.2e-05     0.051      25      56 .]     150     181 ..     147     181 .. 0.90
   5 !   13.2   0.0   3.2e-05     0.072       7      35 ..     165     193 ..     160     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.027
    PF13857.1 22 lAakggalevvrlLlapgadlnlrd 46
                  A+++g+ + ++  ++ g d+n+ d
  MMETSP0890-20130614|23437_1 48 DAIENGDNDEIKRYIDMGFDINVID 72
                 79********************977 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 3.3e-12
    PF13857.1   3 ehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  + g +++v +  e g+t+L lA+++g++++v++Lla +ad+ +rds+g++a+  A
  MMETSP0890-20130614|23437_1  63 DMGfDINVIDP-EDGYTALLLACEQGHTTIVEMLLAGEADYEIRDSFGRSAVYAA 116
                  56666777544.589************************************9876 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 4.6e-08
    PF13857.1  16 gntpLhlAakggalevvrlLlapgadlnlrdsdglta 52 
                  g+++ + Aa +++++vv+lLl++gad++++d dg+ +
  MMETSP0890-20130614|23437_1 109 GRSAVYAAAVANHAQVVDLLLKKGADPTIQDDDGRDP 145
                  6688899999************************876 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 2.2e-05
    PF13857.1  25 k.ggalevvrlLlapgadlnlrdsdgltaldlA 56 
                      +l+++r+L+  ++d+n++d +g+t++d A
  MMETSP0890-20130614|23437_1 150 CaLRHLDIARMLV-ERVDINTHDLSGETPMDHA 181
                  4478*********.*****************98 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 3.2e-05
    PF13857.1   7 advnatdeggntpLhlAakggalevvrlL 35 
                  +d+n+ d++g+tp   Aa +g+++v+ +L
  MMETSP0890-20130614|23437_1 165 VDINTHDLSGETPMDHAAAAGHADVMNFL 193
                  789999999****************9887 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   4.7e+03       9      31 ..      49      71 ..      46      72 .. 0.70
   2 !   23.6   0.0   1.2e-08   2.7e-05       1      32 [.      75     106 ..      75     107 .. 0.89
   3 !   25.8   0.0   2.3e-09   5.3e-06       2      33 .]     109     140 ..     108     140 .. 0.94
   4 !    5.6   0.0    0.0059        13       1      31 [.     141     170 ..     141     172 .. 0.77
   5 !   15.5   0.0   4.3e-06    0.0098       2      26 ..     174     198 ..     173     199 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.1
                 HHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25  9 AalrgnlevvklLlsqGAdlnaq 31
                 A+++g+ + +k  ++ G d+n+ 
  MMETSP0890-20130614|23437_1 49 AIENGDNDEIKRYIDMGFDINVI 71
                 77888777777777777777765 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.2e-08
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  dG+T+L lA++ g++ +v++Ll   Ad  ++d
  MMETSP0890-20130614|23437_1  75 DGYTALLLACEQGHTTIVEMLLAGEADYEIRD 106
                  8*********************9888766665 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 2.3e-09
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                  G+++   Aa  ++++vv lLl++GAd+++qdd
  MMETSP0890-20130614|23437_1 109 GRSAVYAAAVANHAQVVDLLLKKGADPTIQDD 140
                  7888899************************8 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0059
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  dG+ P    +   +l+++++L++   d+n  
  MMETSP0890-20130614|23437_1 141 DGRDPFWAVCALRHLDIARMLVE-RVDINTH 170
                  5666777777778*********9.7777765 PP

  == domain 5    score: 15.5 bits;  conditional E-value: 4.3e-06
                  SCBHHHHHHHTTHHHHHHHHHHTTS CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGA 26 
                  G+TP   Aa  g+++v+ +L ++GA
  MMETSP0890-20130614|23437_1 174 GETPMDHAAAAGHADVMNFLKEHGA 198
                  9***********************9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0034       7.8       6      29 ..      46      69 ..      43      70 .. 0.93
   2 !   19.7   0.0   2.5e-07   0.00057       1      24 [.      75      98 ..      75     104 .. 0.88
   3 !   14.7   0.0     1e-05     0.023       2      28 ..     109     135 ..     108     137 .. 0.93
   4 !    6.1   0.0    0.0064        15       2      29 ..     142     168 ..     141     169 .. 0.86
   5 !   18.4   0.0   6.7e-07    0.0015       2      26 ..     174     198 ..     173     201 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0034
    PF13606.1  6 LhlAasngrielveaLlengadin 29
                 L+ A++ng  + ++ +++ g din
  MMETSP0890-20130614|23437_1 46 LFDAIENGDNDEIKRYIDMGFDIN 69
                 778********************9 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.5e-07
    PF13606.1  1 nGnTpLhlAasngrielveaLlen 24
                 +G+T+L lA+++g++ +ve Ll  
  MMETSP0890-20130614|23437_1 75 DGYTALLLACEQGHTTIVEMLLAG 98
                 79*******************965 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 1e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G+++ + Aa  ++ ++v++Ll++gad+
  MMETSP0890-20130614|23437_1 109 GRSAVYAAAVANHAQVVDLLLKKGADP 135
                  999***********************7 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0064
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  G+ p+  ++  +++++++ L+e+ +din
  MMETSP0890-20130614|23437_1 142 GRDPFWAVCALRHLDIARMLVER-VDIN 168
                  7777888899************9.8888 PP

  == domain 5    score: 18.4 bits;  conditional E-value: 6.7e-07
    PF13606.1   2 GnTpLhlAasngrielveaLlenga 26 
                  G+Tp+++Aa  g+ +++++L e+ga
  MMETSP0890-20130614|23437_1 174 GETPMDHAAAAGHADVMNFLKEHGA 198
                  99**********************8 PP

>> PF06501.6  Human herpesvirus U55 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.8e-05      0.18       3      54 ..      57     108 ..      55     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.8e-05
    PF06501.6   3 elsklvqlevdynelqsednvselilkcvlsktkPvlLlitdGteseaedvl 54 
                  e+++++ + +d+n + +ed ++ l+l c + +t  v +l +   + e  d++
  MMETSP0890-20130614|23437_1  57 EIKRYIDMGFDINVIDPEDGYTALLLACEQGHTTIVEMLLAGEADYEIRDSF 108
                  899******************************9997777665666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 694.94
//
Query:       MMETSP0890-20130614|23439_1  [L=1109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-13   49.5   8.7    8.2e-12   45.3   6.0    2.6  1  PF01734.17 Patatin-like phospholipase
    1.1e-07   31.4   0.0    0.00051   19.6   0.0    3.3  3  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   6.0   1.2e-15   8.2e-12       1     202 [.     632     814 ..     632     816 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.2e-15
   PF01734.17   1 LvlsGGGtrGafslgalkaLkkelgdrfdiisGtSaGaiiaallalgrdpaalvedlrelllnkffdrdllirelaanlaarlsgllgpgglfdaealrellr..kvlgdltlkrlsarlgklpllkslataaqavpaittataasastantanslyteddeddvplad............avraSsafPglfppvsl..dgelyvDGGildNnPila 202
                  +vl+GGG+rG+++lgal+ L +++g ++d+  G S Ga+ a+l a +   + ++++  + +l+++++r                  ++   l+++ +    l+  ++++  t++ + ++l+ +                    + s s+a ++ +l +++ ++d+ + d             ++aS+++ g+fpp  +  dg l+vDGG ++N+P+ +
  MMETSP0890-20130614|23439_1 632 IVLGGGGARGLAHLGALRSL-EAAGVQIDLLIGCSQGAMCALLAAKEAGWPSSSSNNSGQTLKDTERRL----------------QNFAACLASTRKVIMDLNwlRMFAVSTFTGKGFALAVR------------------SAFDSDSEAMEDSWLPRYCVTTDATVGDervhgcgddgpeSCLASMSVCGYFPPIVYsrDGHLLVDGGYCSNLPAAQ 814
                  59******************.********************8888886666667777777777777777................56666677777776666688888888888888888888..................5677788888888888888888888888888888889999************9988855777************975 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.5e-08   0.00051      16      90 ..      79     151 ..      75     152 .. 0.87
   2 ?   -0.4   0.0      0.13     9e+02      13      28 ..     213     230 ..     211     274 .. 0.76
   3 !    7.1   0.0    0.0006       4.1      21      83 ..     323     392 ..     313     397 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 7.5e-08
                  B..--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS.B-SSEEEEEEEEEEEEEEHHHHHHHHCC-H CS
   PF00027.24  16 p..adslyiilsGkvkvykndedgkesilaelgpGdffGelalltge.prsatvvaltdvevlvipredfrelleknp 90 
                     ad+++++ +G++ +  ++e         l++Gd+f+el++l++e +  + + a+++v ++++++ ++++l+ ++p
  MMETSP0890-20130614|23439_1  79 MikADGIFVVCRGEIFLLCEGEIVS-----HLKSGDSFNELCFLLKEyETRVAIAATDHVIIAELSTGAIEKLVLEDP 151
                  5558999999999999999888877.....9****************777777778999**************99998 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.13
                  TT-B..--EEEEEEE-EE CS
   PF00027.24  13 eGdp..adslyiilsGkv 28 
                  +G++  +++l+iil+G+v
  MMETSP0890-20130614|23439_1 213 QGQTlpNKGLHIILQGQV 230
                  566555999*******98 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0006
                  EEEEE-EEEEEEE-----EE...EEEEE-TTEECSGGGCCSSS....B-SSEEEEEEEEEEEEEEHHHHH CS
   PF00027.24  21 yiilsGkvkvykndedgkes...ilaelgpGdffGelalltge....prsatvvaltdvevlvipredfr 83 
                  y++lsG+v+  ++ +    +     +  ++Gd++G   ll+ +      s    a +d+ev ++pr +++
  MMETSP0890-20130614|23439_1 323 YLVLSGRVRSLRYRSRAGHKklcGARDAQRGDVVGLTDLLLLKkqnkNDSLETYAARDAEVIALPRPALN 392
                  99*******99999988888677778999*******99999888888666666678*********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.53u 0.40s 00:00:01.93 Elapsed: 00:00:00.87
# Mc/sec: 3054.67
//
Query:       MMETSP0890-20130614|23455_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 846.71
//
Query:       MMETSP0890-20130614|23474_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 355.82
//
Query:       MMETSP0890-20130614|23493_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   11.9   2.4       0.23   11.4   1.6    1.2  1  PF02466.14 Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> PF02466.14  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.6   1.7e-05      0.23       9      77 ..      14      80 ..      10      97 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
   PF02466.14  9 agvagfalGavyGlfmrsmha..atklfrslplkeqlkavlramkqrspssaknfavvgaiYsgiecaleg 77
                  +v g+++G + Gl m+ ++a   ++ + s  ++  l+ ++++m +    s   ++ + + Y++i+++l +
  MMETSP0890-20130614|23493_1 14 YAVFGGICGSLTGLTMGVVDAgmQMQREGSFDMSRGLRLGVNEMAR----SSILMGGFFTAYQTIKYILYH 80
                 56778888888888888886642444446777788***********....666666666777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 514.63
//
Query:       MMETSP0890-20130614|23498_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 226.56
//
Query:       MMETSP0890-20130614|23508_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   16.4   0.0      0.016   15.3   0.0    1.5  1  PF00536.25 SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.028   14.4   0.0       0.17   11.8   0.0    2.4  1  PF13551.1  Winged helix-turn helix
      0.086   12.6   0.0       0.19   11.5   0.0    1.6  1  PF07647.12 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-06     0.016      11      49 ..     665     703 ..     658     714 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-06
                  HHHHTT-GGGHHHHHCT--SHHHHTT--HHHHHHH---- CS
   PF00536.25  11 WLesiglgqYvdnFrageidgdallllteedLeklgvtl 49 
                   L+   lgqYv++Fr +++ +d l ++t e++ + g+  
  MMETSP0890-20130614|23508_1 665 ILNRVNLGQYVESFRINQVGFDILRRMTVEEFARFGIFD 703
                  577889**************************9999965 PP

>> PF13551.1  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.17      44     109 ..      62     125 ..      52     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.8e-05
    PF13551.1  44 lldrkrrsgrprnlrlseeqeaalvalarekppe.gqarwtlrllaeqlieeefgvtlskstvrriL 109
                   ++ ++r+g  r   ls eqe+alv+ +r+ +   + +r+ +     ++ ++++g +++++ v++++
  MMETSP0890-20130614|23508_1  62 PRK-RPRRGGAR--LLSLEQEKALVDAVRNYRLLnEDSRLPMSFFSAWMLDNDLGEHVTVQKVHNYW 125
                  444.56655444..59*************98888667****************************99 PP

>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.1e-05      0.19      13      52 ..     666     704 ..     656     710 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.1e-05
                  HHHT--CCSHHHHHHHTS-SCTCCCSSCHHHHHCCCHHCH CS
   PF07647.12  13 LrsiglkqYtenFrdqgitggelllrlteedLkrlGitsv 52 
                  L +++l+qY+e Fr +++   ++l r+t e+ +r+Gi +v
  MMETSP0890-20130614|23508_1 666 LNRVNLGQYVESFRINQVGF-DILRRMTVEEFARFGIFDV 704
                  7899*************977.***************9666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.98
# Mc/sec: 1882.85
//
Query:       MMETSP0890-20130614|23516_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   41.0   0.2    3.3e-10   40.0   0.1    1.6  1  PF13704.1 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   2.4e-14   3.3e-10       4      92 ..       8     121 ..       5     126 .. 0.65

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 2.4e-14
    PF13704.1   4 aaflpewlahhralgfdriliy.dndstDgtaeilkrlpdvk.llrhd.................dpy....ederrqv.elrka..lakryaeadwvlvlDaDEflvlpdgert 92 
                  ++ + +++++h+algfd+i++y d++s+ + aei+k+  + k  +r++                 +      + + rq+ ++++a  la+r  + dw+l+lD+DE+++  +g  +
  MMETSP0890-20130614|23516_1   8 GERVASFVRYHLALGFDKIYLYfDDGSELEDAEIAKQEGKEKiYVRFRdldlvnewkllrgynklA-PfienDVQVRQMlNALHAfdLARREDDLDWLLHLDSDELFYPGPGISS 121
                  667899***************736777777777777754433122233466776666665555552.0565333455541455555667777789***********998774455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 991.22
//
Query:       MMETSP0890-20130614|23537_1  [L=936]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-23   82.1   8.8      1e-13   50.5   2.7    2.5  2  PF13414.1  TPR repeat
    1.2e-14   53.0   4.5    1.4e-09   37.0   1.0    3.2  3  PF00515.23 Tetratricopeptide repeat
    2.3e-12   45.6   6.5    1.7e-08   33.5   1.4    3.0  2  PF07719.12 Tetratricopeptide repeat
    6.8e-12   45.6   1.1    7.5e-08   32.7   1.1    2.9  2  PF13432.1  Tetratricopeptide repeat
      7e-09   35.4   2.7    4.3e-06   26.7   0.8    4.0  3  PF13428.1  Tetratricopeptide repeat
    6.2e-08   32.1   1.2    0.00019   21.2   0.0    3.6  3  PF13431.1  Tetratricopeptide repeat
      7e-08   31.5   0.9    1.4e-05   24.4   0.1    2.6  2  PF13181.1  Tetratricopeptide repeat
    5.6e-07   29.2   0.1    1.9e-06   27.6   0.1    2.0  1  PF13424.1  Tetratricopeptide repeat
    1.1e-05   25.0   0.3    6.3e-05   22.6   0.1    2.4  1  PF13371.1  Tetratricopeptide repeat
     0.0013   18.2   1.0       0.13   11.9   0.0    3.6  3  PF13176.1  Tetratricopeptide repeat
     0.0048   17.1   2.2       0.58   10.6   0.2    3.6  3  PF13174.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.048   13.6   0.1       0.11   12.5   0.1    1.6  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
        1.2    8.9   6.1         55    3.6   0.4    3.9  3  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   1.8e-14   1.9e-11      18      69 .]     841     891 ..     838     891 .. 0.95
   2 !   50.5   2.7   9.9e-17     1e-13       2      69 .]     859     925 ..     858     925 .. 0.97

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.8e-14
    PF13414.1  18 dydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  + + A++ y+k ++ +p++ae+++++A ay+ lg +y++A++d+++Alel P
  MMETSP0890-20130614|23537_1 841 EVERAVDVYTKVIDTWPKYAEAWNRRARAYFLLG-NYVKAAQDLNQALELQP 891
                  5689******************************.7**************98 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 9.9e-17
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                   Aea+++++ a+f +g+y +A + +++Alel+p+n++++ +  l+ +k+  +y  Ale+y++A++l+P
  MMETSP0890-20130614|23537_1 859 YAEAWNRRARAYFLLGNYVKAAQDLNQALELQPDNPSAWVGKMLVSMKQH-EYAPALEAYKHAIKLNP 925
                  69***********************************************9.6**************99 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.6   1.7e+03      17      34 .]     842     859 ..     839     859 .. 0.84
   2 !   37.0   1.0   1.3e-12   1.4e-09       1      34 []     860     893 ..     860     893 .. 0.98
   3 !   15.1   0.1   1.1e-05     0.011      12      32 ..     905     925 ..     902     927 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHHHHHTTH CS
   PF00515.23  17 ydeAleyyekALelnPnn 34 
                   + A++ y k++   P++
  MMETSP0890-20130614|23537_1 842 VERAVDVYTKVIDTWPKY 859
                  589*********988875 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 1.3e-12
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                  a+a+++++ ay+ lg+y +A ++ ++ALel+P+n
  MMETSP0890-20130614|23537_1 860 AEAWNRRARAYFLLGNYVKAAQDLNQALELQPDN 893
                  89******************************98 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.1e-05
                  HHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  12 lklgkydeAleyyekALelnP 32 
                  +k+ +y  Ale+y+ A++lnP
  MMETSP0890-20130614|23537_1 905 MKQHEYAPALEAYKHAIKLNP 925
                  79******************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   1.4   1.7e-11   1.7e-08       1      34 []     860     893 ..     860     893 .. 0.98
   2 !   13.1   0.1   5.6e-05     0.059      11      33 ..     904     926 ..     902     927 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.7e-11
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                  aea++++++ay+ lg+y +A++++++Alel+P+n
  MMETSP0890-20130614|23537_1 860 AEAWNRRARAYFLLGNYVKAAQDLNQALELQPDN 893
                  89******************************98 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 5.6e-05
                  HHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  11 yyklgdyeeAleafekAleldPn 33 
                   +k+ +y+ Alea++ A++l+P 
  MMETSP0890-20130614|23537_1 904 SMKQHEYAPALEAYKHAIKLNPA 926
                  589*******************5 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   4.3e-08   4.5e-05      11      52 ..     840     881 ..     838     883 .. 0.93
   2 !   32.7   1.1   7.2e-11   7.5e-08       3      63 ..     866     926 ..     866     928 .. 0.97

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.3e-08
    PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaa 52 
                  +++++A++++ ++++ +P++aea+ ++a+a++ lg++ +Aa+
  MMETSP0890-20130614|23537_1 840 QEVERAVDVYTKVIDTWPKYAEAWNRRARAYFLLGNYVKAAQ 881
                  689*************************************94 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 7.2e-11
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  +Ara++ +G+y +A++ l++al+l+P+++ a+ +   + +++ +++ A++++++a++l+P 
  MMETSP0890-20130614|23537_1 866 RARAYFLLGNYVKAAQDLNQALELQPDNPSAWVGKMLVSMKQHEYAPALEAYKHAIKLNPA 926
                  69*******************************************************9995 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00048       0.5      15      43 ..     840     868 ..     836     868 .. 0.91
   2 !   26.7   0.8   4.1e-09   4.3e-06       1      39 [.     860     898 ..     860     904 .. 0.94
   3 ?    2.2   0.1      0.31   3.3e+02      13      33 ..     906     926 ..     900     936 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00048
    PF13428.1  15 GdpdeAiallrralalaPddaealllLar 43 
                  +++++A++++ +++ + P+ aea+ + ar
  MMETSP0890-20130614|23537_1 840 QEVERAVDVYTKVIDTWPKYAEAWNRRAR 868
                  6899********************99886 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 4.1e-09
    PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaeall 39 
                  +ea+ ++ara++ lG++ +A++ l++al+l+Pd++ a+ 
  MMETSP0890-20130614|23537_1 860 AEAWNRRARAYFLLGNYVKAAQDLNQALELQPDNPSAWV 898
                  68***********************************95 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.31
    PF13428.1  13 alGdpdeAiallrralalaPd 33 
                   +++++ A+++++ a++l+P 
  MMETSP0890-20130614|23537_1 906 KQHEYAPALEAYKHAIKLNPA 926
                  67899**************97 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.8e-07   0.00019       2      33 ..     849     880 ..     848     881 .. 0.95
   2 !    7.2   0.0    0.0055       5.8       3      17 ..     884     898 ..     882     900 .. 0.89
   3 ?   -0.3   0.0       1.4   1.5e+03       1      10 [.     916     925 ..     916     929 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.8e-07
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                  y k ++  P++a+a+n++A++++ +G++ +A 
  MMETSP0890-20130614|23537_1 849 YTKVIDTWPKYAEAWNRRARAYFLLGNYVKAA 880
                  99***************************996 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0055
    PF13431.1   3 ekaleldPnnadayn 17 
                  ++alel+P+n+ a+ 
  MMETSP0890-20130614|23537_1 884 NQALELQPDNPSAWV 898
                  79***********95 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1.4
    PF13431.1   1 lyekaleldP 10 
                  +y+ a++l+P
  MMETSP0890-20130614|23537_1 916 AYKHAIKLNP 925
                  69*******9 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.3e-08   1.4e-05       1      34 []     860     893 ..     860     894 .. 0.94
   2 ?    5.1   0.1     0.019        20      16      32 ..     909     925 ..     903     927 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.3e-08
                  ---TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkprn 34 
                  a+a+++++++Y+ lG+y kA + l++alel p+n
  MMETSP0890-20130614|23537_1 860 AEAWNRRARAYFLLGNYVKAAQDLNQALELQPDN 893
                  589*****************************54 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.019
                  -HHHHHHHHH---HHHH CS
    PF13181.1  16 dydkAkeylekalelkp 32 
                  +y  A+e+++ a++l+p
  MMETSP0890-20130614|23537_1 909 EYAPALEAYKHAIKLNP 925
                  5677***********99 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   1.8e-09   1.9e-06       4      77 ..     859     925 ..     838     926 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.8e-09
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  +a ++n+ a +++ lg+y +A + +++alel+       pd  +a+     + +++ +y+ Ale ++ A+++ +
  MMETSP0890-20130614|23537_1 859 YAEAWNRRARAYFLLGNYVKAAQDLNQALELQ-------PDNPSAWVGKMLVSMKQHEYAPALEAYKHAIKLNP 925
                  7999*************************997.......44467999***********************9975 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1     6e-08   6.3e-05      10      65 ..     841     896 ..     838     904 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6e-08
    PF13371.1  10 dferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapda 65 
                  ++erA  v+  ++   P  ++ +  r+ +++ lg++  Aa+dL+++lel pd p a
  MMETSP0890-20130614|23537_1 841 EVERAVDVYTKVIDTWPKYAEAWNRRARAYFLLGNYVKAAQDLNQALELQPDNPSA 896
                  567777777777788899999*******************************9987 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.12   1.2e+02      11      31 ..     838     856 ..     836     858 .. 0.81
   2 !   11.9   0.0   0.00013      0.13       1      33 [.     862     892 ..     862     895 .. 0.83
   3 ?   -3.0   0.0       7.7   8.1e+03      18      30 ..     913     923 ..     909     926 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.12
    PF13176.1  11 rlgdyekAielyeraLaltkd 31 
                  r ++ e+A+++y++  +++  
  MMETSP0890-20130614|23537_1 838 RIQEVERAVDVYTK--VIDTW 856
                  67899*********..77765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00013
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpl 33 
                  a+++ ar+y+ lg+y kA++ + +aL+l   p+
  MMETSP0890-20130614|23537_1 862 AWNRRARAYFLLGNYVKAAQDLNQALEL--QPD 892
                  79999*******************5555..444 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 7.7
    PF13176.1  18 AielyeraLaltk 30 
                  A+e+y+   a++ 
  MMETSP0890-20130614|23537_1 913 ALEAYKH--AIKL 923
                  8999999..5543 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.077        81      13      32 ..     840     858 ..     836     859 .. 0.85
   2 !   10.6   0.2   0.00055      0.58       5      33 .]     865     893 ..     862     893 .. 0.94
   3 ?   -1.0   0.0       2.7   2.9e+03      10      31 ..     905     925 ..     900     926 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.077
                  HHHHHHHHHHHHHHHHH-TT CS
    PF13174.1  13 lgdtdeAlealerlikeyPd 32 
                  + + ++A++++ ++i+  P+
  MMETSP0890-20130614|23537_1 840 Q-EVERAVDVYTKVIDTWPK 858
                  4.789***********9997 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00055
                  HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   5 klalsyyklgdtdeAlealerlikeyPdS 33 
                  ++a++y+ lg++ +A + l++ ++  Pd+
  MMETSP0890-20130614|23537_1 865 RRARAYFLLGNYVKAAQDLNQALELQPDN 893
                  68******99*****************95 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 2.7
                  HHHHHHHHHHHHHHHHHHHH-T CS
    PF13174.1  10 yyklgdtdeAlealerlikeyP 31 
                  +++  +++ Alea++  ik  P
  MMETSP0890-20130614|23537_1 905 MKQH-EYAPALEAYKHAIKLNP 925
                  5556.8899******9999888 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011      0.11       7      82 ..     844     918 ..     840     920 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00011
                  HHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHH.HHHHHHTT-HHHHCCCHH CS
    PF12895.2   7 nAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.leldssslgcryll.ArcllklgkydeAiavLe 82 
                   A+ ++ k++ + pk   ++++ + A +++l+g+y +A + l++ lel++ +  ++++    +  k+++y  A+++++
  MMETSP0890-20130614|23537_1 844 RAVDVYTKVIDTWPK--YAEAWNRRARAYFLLGNYVKAAQDLNQaLELQPDN-PSAWVGkMLVSMKQHEYAPALEAYK 918
                  566666677777664..35578889*****************99*****999.5666554788888888999998886 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.083        87      38      60 ..      40      62 ..      19      63 .. 0.79
   2 ?    2.3   0.0      0.14   1.4e+02       9      33 ..     830     854 ..     828     862 .. 0.89
   3 ?    3.6   0.4     0.052        55      18      33 ..     907     922 ..     875     927 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.083
                 HHHHCTTHHCHHHHHHHHHHHHH CS
   PF04212.13 38 alkyepnperrealrqkieeylk 60
                  lk++++ +r ++l+qk+ + l+
  MMETSP0890-20130614|23537_1 40 ELKAQRGARRARLLKQKMLQLLD 62
                 3455599999********99886 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.14
                  HHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF04212.13   9 ikkAveaDeagkyeeAlelYkeAle 33 
                  i+ A+  D+ ++ e A++ Y++ ++
  MMETSP0890-20130614|23537_1 830 INDAIPQDRIQEVERAVDVYTKVID 854
                  788999**************99665 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.052
                  TT-HHHHHHHHHHHHH CS
   PF04212.13  18 agkyeeAlelYkeAle 33 
                  +++y+ Ale+Yk+A++
  MMETSP0890-20130614|23537_1 907 QHEYAPALEAYKHAIK 922
                  458999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       645  (0.0471767); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:01.35
# Mc/sec: 1661.47
//
Query:       MMETSP0890-20130614|23554_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.8   0.0    7.2e-07   29.1   0.0    2.3  2  PF00106.20 short chain dehydrogenase
  ------ inclusion threshold ------
        0.1   10.4   0.0       0.14   10.0   0.0    1.1  1  PF01044.14 Vinculin family


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.1e-10   7.2e-07      41     140 ..      15     108 ..       1     113 [. 0.80
   2 ?    2.4   0.0     0.017   1.2e+02     144     165 ..     151     172 ..     143     174 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.1e-10
                  HHHHHHHH.H---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEECHHHH CS
   PF00106.20  41 aeliaele.algaevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltldadlgafvlfSSvagvl 140
                  a++    + +   + +v+++D++d  ++++++a++     ++d++v+nag++  +++ + + +e+   +l++++ g++ l+e ++++    +v+++S ag l
  MMETSP0890-20130614|23554_1  15 AKMMMTTKsEYADKLRVMQLDISDSTSIDTFVASVG----EIDVLVNNAGIAYkNADPTPF-KEQCLPTLKTNFWGTIELTEKLKPK---KVVNVASRAGKL 108
                  3333333324558999********************....9**********9856666666.9999********************5...6******99976 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.017
                  T.HHHHHHHCHHHCCHHHHHHH CS
   PF00106.20 144 gqaaYaaakaaldalaesrrae 165
                  g ++Y+ +k +l a ++ + ++
  MMETSP0890-20130614|23554_1 151 GNSNYGFSKLGLIAYTKLLSRD 172
                  889*************998775 PP

>> PF01044.14  Vinculin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0     2e-05      0.14     581     638 ..      13      69 ..       2      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2e-05
                  HHHHHHHHHHHHHHHHHHHHXXXXTTTSXHHHHHHHHHHHHHHHHHHHHHTTSSSXTT CS
   PF01044.14 581 aaqehletlknqwidkvekltelvDeaidtddflaaSEeaikedvnkckvalanadpq 638
                  aa + + t k +++dk+++++  + + +++d f+a S   i   vn+  +a +nadp 
  MMETSP0890-20130614|23554_1  13 AAAKMMMTTKSEYADKLRVMQLDISDSTSIDTFVA-SVGEIDVLVNNAGIAYKNADPT 69 
                  6778999**************************95.7777999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 1002.92
//
Query:       MMETSP0890-20130614|23559_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-08   32.6   1.2     0.0031   17.5   0.0    2.2  2  PF01814.18 Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> PF01814.18  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   2.5e-06     0.035       7      64 ..       3      62 ..       1      73 [. 0.78
   2 !   17.5   0.0   2.2e-07    0.0031       8      63 ..      75     132 ..      68     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.5e-06
                 HHHHHHHH---HHHHHS--HH.............HHHHHHHHHHHHHHHHHHHH-TTHH. CS
   PF01814.18  7 daeHrelrellarlreaaeal..arpedlrklaelldelveelerHhakEEellfPaler 64
                    H+++r++ + l +a+++   ++ +    +  l +++ + +++Hh +EE+++ P + +
  MMETSP0890-20130614|23559_1  3 LVPHEAFRWIDENLKDAIQHYkgESWQTKLLFDYLENYYIHCVHHHHVAEEKIYNPIIVK 62
                 567999***************87555556666666677777************9998874 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2.2e-07
                  HHHHHHH---HHHHHS--HH.............HHHHHHHHHHHHHHHHHHHH-TTHH CS
   PF01814.18   8 aeHrelrellarlreaaeal..arpedlrklaelldelveelerHhakEEellfPale 63 
                   +H+++ ++l++l ++ +     +p++++ ++ +l el + l +H+++EE+ + Pa+ 
  MMETSP0890-20130614|23559_1  75 PDHKKICAILDDLPSFRNPCtnKDPDAIKMFKATLLELLNLLNKHFEEEERFYPPAVF 132
                  68*******************777777************************9866654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.75
# Mc/sec: 738.08
//
Query:       MMETSP0890-20130614|23566_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.79
# Mc/sec: 931.24
//
Query:       MMETSP0890-20130614|23569_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.097   12.2   0.0    1.6  1  PF10437.4 Bacterial lipoate protein ligase C-terminus


Domain annotation for each model (and alignments):
>> PF10437.4  Bacterial lipoate protein ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.1e-06     0.097      40      78 ..      42      80 ..      41      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-06
    PF10437.4 40 gpedleeleekLiGvkydkeaikkalkeldlkeyfgnie 78
                 +ped++++ + L +v++dk ++k++++ +  + y ++ +
  MMETSP0890-20130614|23569_1 42 SPEDWQAIVDILSQVPFDKTSFKRIFNAFADNIYYEKSD 80
                 579**************************7777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 561.25
//
Query:       MMETSP0890-20130614|23576_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-24   85.8  21.8    1.5e-23   83.1   5.9    2.1  2  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.017   14.0   3.4       0.11   11.3   2.0    2.4  1  PF00122.15 E1-E2 ATPase
       0.25   10.6  20.8       0.09   12.0   4.1    2.8  2  PF07698.6  7TM receptor with intracellular HD hydrolase


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   3.7   0.00013      0.61     231     296 ..      35      97 ..      22     118 .. 0.69
   2 !   83.1   5.9   3.3e-27   1.5e-23     170     311 ..     132     276 ..     120     277 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00013
   PF02535.17 231 rkkavllnllfaltaplGaliGiavsaadnsgrsdlvsgillalaaGtflYvalvellpeelanek 296
                  +++a+ l+l+ ++++ lG l+ +++   +++     + +  lalaaG ++ v++ el+   + +e 
  MMETSP0890-20130614|23576_1  35 EINALSLSLFAGAATSLGGLVVFGM---SKNEVPAALLATSLALAAGAMFSVSFLELMVPSSTSEL 97 
                  5566667778888888888888888...55555555666667888888888888888766665554 PP

  == domain 2    score: 83.1 bits;  conditional E-value: 3.3e-27
   PF02535.17 170 aaaviaillvlglglHsfidGLAiGvsssedt...gislflAvllHelphelglgaiLlk.agasrkkavllnllfaltaplGaliGiav...saadnsgrsdlvsgillalaaGtflYvalvellpeelanekslkqnllqllglllG 311
                  ++ +++il++++l +H+f++GLA+++s s+++   g+++ +A+++H++p+++++ ++Ll  + + r++a+l+  l+++++ lGa++G+++   +    s+ s+++ + ++a+ aG++  val+ellpe  a+e++    +++++g+l+G
  MMETSP0890-20130614|23576_1 132 RMYRLGILMTVALTIHNFPEGLAVAMSASSSNrssGLIVAIAIAIHNIPEGMAIAGPLLAsSAYGRIQALLATALSGFSESLGAILGLILlryNTSLASSSSNIIVEDVQAVVAGIMSSVALFELLPEAIAQERE----IYAIFGFLAG 276
                  3335699*****************99998888899*******************99987515689**************************98888999**********************************96....9999999988 PP

>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   2.4e-05      0.11     175     211 ..     130     194 ..      32     201 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.4e-05
   PF00122.15 175 t............................dvaeklleallialallvvaiPegLplavtltlavg 211
                                               ++ +++   l++a+a+++  iPeg+++a +l  + +
  MMETSP0890-20130614|23576_1 130 QdrmyrlgilmtvaltihnfpeglavamsASSSNRSSGLIVAIAIAIHNIPEGMAIAGPLLASSA 194
                  0333333333333334444445555555578999**********************999876665 PP

>> PF07698.6  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.1     2e-05      0.09     113     178 ..      51     116 ..      19     119 .. 0.85
   2 ?    3.4   4.9    0.0089        40     107     182 ..     145     221 ..     136     260 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2e-05
    PF07698.6 113 sglvgalslrrlrsRsqllragllvalvnllvilalglisssnlswleillslvlafisgllsail 178
                   g ++++ +++    + ll ++l +a+++++++ +l+l+ +s+ s+l+i++ +  +fi g+ls +l
  MMETSP0890-20130614|23576_1  51 LGGLVVFGMSKNEVPAALLATSLALAAGAMFSVSFLELMVPSSTSELSINWFISGCFIYGILSYLL 116
                  35566788888888899*********************************************9876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0089
    PF07698.6 107 lllalvsglvgalslrrlrsRsqllragllvalvnl..lvilalglisssnlswleillslvlafisgllsailaigl 182
                  ++  +  gl++a+s+++ ++Rs+ l++++ +a+ n+   +++a  l+ ss++  ++ ll+++l   s  l ail + l
  MMETSP0890-20130614|23576_1 145 TIHNFPEGLAVAMSASS-SNRSSGLIVAIAIAIHNIpeGMAIAGPLLASSAYGRIQALLATALSGFSESLGAILGLIL 221
                  56666677777777765.678888888999999999999999999999999976665555544444444444554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.96
# Mc/sec: 691.45
//
Query:       MMETSP0890-20130614|23627_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-23   81.4   0.0    6.4e-23   81.2   0.0    1.0  1  PF13500.1 AAA domain


Domain annotation for each model (and alignments):
>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   4.7e-27   6.4e-23      21     183 ..       2     163 ..       1     178 [. 0.83

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 4.7e-27
    PF13500.1  21 LvsalkrkgnkvgyfKPvqtglesdsdaelvqellgldetheeaeplalseplsphlaaaregstid..lekivskelek.ardivvvEGagglavpltseslnadiaksl..glpvlLVargglgtinhtllaiealrsrgvrilgviinkvnep..envealrkkspv 183
                  Lv+a +r+g  v+y+KPvqtg    +d++ ++++++  + +     + +s+p sphlaa ++++  d   ++ +s+ l+k ++++++vE+agg+++p +s++ +ad++ +l   l+vlLV++g+lg+i++tl+a+e+l +rg++  ++ +++ ++p   n ++l+++++ 
  MMETSP0890-20130614|23627_1   2 LVRAGLRRGD-VSYLKPVQTGD---GDVRIIEQYAKAARCYA---LYSWSTPCSPHLAAPKNEVPSDvtFTRAISSWLAKsRERLTIVETAGGVLSPAPSGTPQADLFMTLkeSLSVLLVGDGRLGGISATLTAVESLTARGLKPDAIALVG-ADPqfGNADYLKTHFSE 163
                  6777777775.5*********8...8*********9999777...799**********99887555533444445555553679***************************7779************************************9.55524588888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 600.61
//
Query:       MMETSP0890-20130614|23650_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-12   45.2   0.1    5.2e-12   44.9   0.1    1.2  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   3.8e-16   5.2e-12      20      66 ..       2      47 ..       1      49 [. 0.93

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 3.8e-16
                 EEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEE CS
   PF01423.17 20 eveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlv 66
                 ++eG++++fD++mN+vL+d++e   +++++ + l++il++G++i+l+
  MMETSP0890-20130614|23650_1  2 RLEGRIIGFDEYMNVVLDDAEEVHLKTNER-KPLDRILLKGDTITLM 47
                 69*********************8888888.9*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 229.65
//
Query:       MMETSP0890-20130614|23651_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.95
# Mc/sec: 504.50
//
Query:       MMETSP0890-20130614|23666_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.081   12.6   0.0      0.097   12.4   0.0    1.1  1  PF02258.11 Shiga-like toxin beta subunit


Domain annotation for each model (and alignments):
>> PF02258.11  Shiga-like toxin beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.1e-06     0.097      25      66 ..      21      64 ..       4      67 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-06
                 E---EEEE--TTHHHH.HHHHHH---EEEEE-.S---------E CS
   PF02258.11 25 vddkelftsrwnlqsl.llsaqltGmtvtiks.sacesGsGfae 66
                 +++   ft+r    +l l s  + G+t   ks s c++   f+ 
  MMETSP0890-20130614|23666_1 21 LGGFRHFTTRVCAVPLpLNSNEVDGITFVNKSsSVCHNENSFSS 64
                 56778899999999997899*******88886267****99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 337.85
//
Query:       MMETSP0890-20130614|23657_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-84  283.0   1.1    1.5e-84  282.7   0.8    1.0  1  PF01716.13 Manganese-stabilising protein / photosystem II polypeptide


Domain annotation for each model (and alignments):
>> PF01716.13  Manganese-stabilising protein / photosystem II polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.7   0.8   1.1e-88   1.5e-84       3     244 ..      11     251 ..       9     252 .. 0.93

  Alignments for each domain:
  == domain 1    score: 282.7 bits;  conditional E-value: 1.1e-88
   PF01716.13   3 qsltydeikgtGlankcpeleetargsieleagkkykvkdlclePteflvkeepvnkrqeae..fvktklltrlttsldqisgdlkveadgsltfkekdGidfqavtvqlpGGervpflftiknlvaktepdatsintstdfkGefkvPsyrgasfldPkgrGlatGydnavalpaaa....deeelakenvkrtalskGkislkvakvdaetGeiaGvfesiqpsdtdlGakepkdvkirGvfyarv 244
                  ++l+y+++kgtGlan+c e+     +si +  +  yk+ dlcleP+ ++v ee +nk+ ++e  fv+tkl+tr+t++ld isg+l  e  gs+tfke+dGid+++ tvqlpGGervpflft+k+lvak++ +a  ++   +f G fkvPsyr+  fldPkgrG++tGyd+a alp ++     + el+ke +k + +  G++ ++v+ v++e Gei Gvf s qpsdtd+Gakepk++  +G+fy+rv
  MMETSP0890-20130614|23657_1  11 NQLSYEQVKGTGLANRCNEVVGK--DSITVPNSG-YKLVDLCLEPKVWQVEEEVANKKGDVEkqFVNTKLMTRQTYTLDGISGKL--EGGGSITFKEEDGIDYAPATVQLPGGERVPFLFTVKELVAKGNGGA--FKPGYEFGGSFKVPSYRTGLFLDPKGRGMTTGYDQAQALPGTQtgveGQAELDKETNKVFDVLDGTVEFAVSAVNKEEGEIGGVFVSSQPSDTDMGAKEPKKILSKGIFYGRV 251
                  789***************99876..888887666.**********************9865444*******************87..578***************************************9998..99**************************************87522223568************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.75
# Mc/sec: 814.76
//
Query:       MMETSP0890-20130614|23656_1  [L=1126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-05   22.7   0.0     0.0013   18.2   0.0    2.3  2  PF00589.17 Phage integrase family


Domain annotation for each model (and alignments):
>> PF00589.17  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.011   1.5e+02      22      40 ..     883     901 ..     875     912 .. 0.88
   2 !   18.2   0.0   9.7e-08    0.0013     102     171 ..    1011    1079 ..     963    1081 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.011
                  HHHHH---HHHH---HHHH CS
   PF00589.17  22 rdrllvellleTglRisEl 40 
                  + r+l+ ++++Tg R +El
  MMETSP0890-20130614|23656_1 883 SLRALFATAWQTGFRKNEL 901
                  6799**************8 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 9.7e-08
                   SSS---HHHH---HHHHHHH----SS----TTT---HHHHHH----HHHHHH-----SSHHHHHHCTTSG CS
   PF00589.17  102 rgkplsdstvnrafkravkeagiekeltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthvak 171 
                    ++ l d+ ++  +  +v +  ++ + + H++R  +a+all +G +   +q ll ++s ++ ++Y+++++
  MMETSP0890-20130614|23656_1 1011 FRHSLLDKVFRAFIGLIVPRERVS-QYSMHSFRSGLASALLLAGKSHPMIQALLRWASPESLSRYARLQP 1079
                   455555556666666666666666.99**************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.58s 00:00:01.79 Elapsed: 00:00:01.14
# Mc/sec: 2346.35
//
Query:       MMETSP0890-20130614|23687_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   13.1   0.1      0.097   13.0   0.0    1.1  1  PF08241.7 Methyltransferase domain
      0.093   12.8   2.5       0.16   12.1   1.8    1.4  1  PF07554.8 Uncharacterised Sugar-binding Domain
        2.2    8.7   6.5        1.4    9.3   3.5    1.5  2  PF12752.2 SUZ domain


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.097      18      54 ..       6      44 ..       1      54 [. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-05
    PF08241.7 18 paarvtgvDlseemlatakerlkeegle..lvvadaeel 54
                 ++a+ +g++l +++la+ak+ +k+++ +  + +a+ae  
  MMETSP0890-20130614|23687_1  6 HKAKSYGIELKPNFLAEAKATAKRREKKaeYEKAKAEAA 44
                 57999***************9999998888888888765 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   3.4e-05      0.16      19      47 ..      31      59 .]      20      59 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHHHHHH...TSTTTTCCC CS
    PF07554.8 19 ekknaynnAitaAkaiLnntngpnatqee 47
                 ekk++y++A+++A a+ ++ +g++a ++e
  MMETSP0890-20130614|23687_1 31 EKKAEYEKAKAEAAATSEDGEGDEAAPQE 59
                 79*******************99988775 PP

>> PF12752.2  SUZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.5   0.00032       1.4       8      52 ..       1      41 [.       1      42 [. 0.75
   2 ?   -1.7   0.0      0.86   3.9e+03      15      18 ..      46      49 ..      40      58 .. 0.44

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00032
    PF12752.2  8 lrR.PskassesergssgssagakgakdrkaksleEReaeYqeARe 52
                 +rR  +ka s +      + +++  a+++++  + E++aeY++A++
  MMETSP0890-20130614|23687_1  1 MRRlEHKAKSYG-----IELKPNFLAEAKATAKRREKKAEYEKAKA 41
                 566433333333.....567889999******************86 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.86
    PF12752.2 15 sses 18
                 +se+
  MMETSP0890-20130614|23687_1 46 TSED 49
                 3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      582  (0.0425688); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.46s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 191.06
//
Query:       MMETSP0890-20130614|23688_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00095   18.3   0.0     0.0018   17.4   0.0    1.4  1  PF02434.11 Fringe-like
  ------ inclusion threshold ------
      0.074   12.6   0.1          1    8.8   0.0    2.2  2  PF00535.21 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF02434.11  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.7e-07    0.0018      88     120 ..      28      60 ..       7      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.7e-07
   PF02434.11  88 kWfchvDDDnylnveaLlklLskynhtqdvylG 120
                   Wf+  DDD y  +++L +lL+++++ q + l 
  MMETSP0890-20130614|23688_1  28 DWFIFSDDDEYFRPSNLYNLLQRFDPLQSIALS 60 
                  7*************************9998775 PP

>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00015         1      80     104 ..      28      52 ..      22      62 .. 0.92
   2 ?    1.3   0.0     0.032   2.2e+02      95     159 ..     139     199 ..     132     217 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00015
                  -EEEEEETTEEE-TTHHHHHHHHHH CS
   PF00535.21  80 dyilflDaDdepdpdwleklvekle 104
                  d+++f D+D +++p  l  l+++++
  MMETSP0890-20130614|23688_1  28 DWFIFSDDDEYFRPSNLYNLLQRFD 52 
                  8********************9987 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.032
                  HHHHHHHHHHH.-T..T--EEEEEEEEEEE-----.....EEEEEEE---S-BS--TTTS-GGGE CS
   PF00535.21  95 wleklveklekdgadvvigsrvrifgetdpnkrnlrvrelellykkirkrslglnlsfligsnal 159
                  ++ ++++kl + ++ +v g r ++++++++   ++++      y  ++ +++  + + +i++ + 
  MMETSP0890-20130614|23688_1 139 CFTDVLSKLAR-DDVAVHGARTAYSMNNNNGLLQKFH---KSHYDIHQEFNDLEKATNNIPPIRY 199
                  66778899999.6668888888888888888888865...4444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.78
# Mc/sec: 1056.85
//
Query:       MMETSP0890-20130614|23698_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-74  250.3   0.0    1.9e-74  250.0   0.0    1.1  1  PF00069.20 Protein kinase domain
    1.5e-38  132.2   0.0    1.9e-38  131.9   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
     0.0031   16.4   0.0     0.0053   15.7   0.0    1.3  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0038   16.8   0.1      0.012   15.1   0.1    1.7  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   0.0   5.4e-78   1.9e-74       5     260 .]      41     298 ..      37     298 .. 0.94

  Alignments for each domain:
  == domain 1    score: 250.0 bits;  conditional E-value: 5.4e-78
                  EEEE----EEEEEEEETTCCE....EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE...TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   5 eklGsGsfGkVykakkkktgk....kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld...kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                   +lG G+f+kV+k++++         vAvK++ k  e +++++ ++  E+++l++++Hpni++l++++eek+ +y+v+e++egg+lf+ + k++ ++e+e++++++ +l +l+ylH+ +i+HrDLKpeN+Ll+   ++ ++k+aDFG+ak  + s+++l+t++gt+ Y+APE+l+ + +y+++vD+Ws+Gvi+y ll g +pf+++   ++  l++ki+  ++ ++ + +++ s+++kdlikk+l  +p++Rlta+++l+hpw+
  MMETSP0890-20130614|23698_1  41 AELGTGAFSKVVKGSRRLPDGsagvAVAVKCITKTPELKQEDIDSLYeEVQVLRSITHPNIIELYDFYEEKKMFYMVIELMEGGELFERIVKKTFYNEKEARDLIRILLDALAYLHRAAIVHRDLKPENLLLKspyNDFDIKLADFGFAK--KVSGKSLDTQCGTPGYVAPEILK-GVKYGSEVDMWSCGVIVYILLGGYPPFHDD---NHAVLYRKIKAADYTFEPQYWEQVSDDAKDLIKKMLVVNPDNRLTADQALRHPWF 298
                  589********999877433336669*********9999999887768*******************************************99999*************************************44444556********9..69*********************.*****************************9...******************************************************8 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   5.6e-42   1.9e-38       4     254 ..      40     291 ..      37     295 .. 0.87

  Alignments for each domain:
  == domain 1    score: 131.9 bits;  conditional E-value: 5.6e-42
                  EEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---...TTSBHHHHHHHHHHT-SSGGGS--HHH CS
   PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekp...ekcpeelyelmkqCweeepeeRptfke 254
                    +lG Gaf+kVv+g  +  + ++ v VavK++++  + ++e+ ++++ee+++++++ hpni++l+ ++ +++ +++v+e+++gG+L e + kk  +  + k+  +++  + ++++yL++  +vHrdL   N Ll++   +  +k++DfG a+++      k+ +++     ++apE+lk  k+ s+ D+Ws Gv+++ ++  g  p+++ +++ +++++k+     +p   e+++++ ++l+k+ +  +p++R t ++
  MMETSP0890-20130614|23698_1  40 RAELGTGAFSKVVKGSRRLPDGSAGVAVAVKCITKtpELKQEDIDSLYEEVQVLRSITHPNIIELYDFYEEKKMFYMVIELMEGGELFERIVKK--TFYNEKEARDLIRILLDALAYLHRAAIVHRDLKPENLLLKSpynDFDIKLADFGFAKKVSG----KSLDTQCGTPGYVAPEILKGVKYGSEVDMWSCGVIVYILL-GGYPPFHDDNHAVLYRKIKAADYTFEPqywEQVSDDAKDLIKKMLVVNPDNRLTADQ 291
                  679***************9999***********653366777799********************************************99997..78888888888888999***********************8775669************33....33334445668*************************9665.599***************87766666612256778999**************98766 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-06    0.0053      94     166 ..     116     187 ..     106     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.6e-06
    PF06293.9  94 llteklegaqdLaeilakwae.laeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDld 166
                  +++e +eg +  + i++k  + ++e+  r l++ +  + a +hra + H+dl + n+ll+   +++++ l D+ 
  MMETSP0890-20130614|23698_1 116 MVIELMEGGELFERIVKK--TfYNEKEARDLIRILLDALAYLHRAAIVHRDLKPENLLLKSPYNDFDIKLADFG 187
                  567777777777788886..559999999999999999**********************************95 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0028       9.5      67     108 ..     114     158 ..      76     160 .. 0.68
   2 !   15.1   0.1   3.6e-06     0.012     148     182 ..     141     175 ..     128     191 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0028
                  CSCEEEEEE---HHBCCT.....CSHHHHHHHHHHHHHHHHHHHHHS CS
   PF01636.18  67 lgllfalleyvpgevler.....klnarqlpallealaellaalhqa 108
                   +++ +l+e+  ge +er       n++++++l++ l ++la lh+a
  MMETSP0890-20130614|23698_1 114 FYMVIELMEG--GELFERivkktFYNEKEARDLIRILLDALAYLHRA 158
                  4445555555..55555566666556*******************98 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.6e-06
                  HHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE.T CS
   PF01636.18 148 leervlaalaallpgaeppvllHgDlhpgNllvd.p 182
                  +++ +++ l+++l    +++++H+Dl+p Nll++ p
  MMETSP0890-20130614|23698_1 141 ARD-LIRILLDALAYLHRAAIVHRDLKPENLLLKsP 175
                  333.67777777777779***************953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.77
# Mc/sec: 1070.58
//
Query:       MMETSP0890-20130614|23712_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.83
# Mc/sec: 323.36
//
Query:       MMETSP0890-20130614|23711_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-11   45.0   0.7    2.7e-11   43.6   0.0    2.0  3  PF08241.7  Methyltransferase domain
    1.1e-11   44.6   0.0    1.8e-11   43.8   0.0    1.4  1  PF13489.1  Methyltransferase domain
    1.5e-10   41.3   0.4    5.4e-10   39.5   0.0    2.1  2  PF08242.7  Methyltransferase domain
    8.7e-10   38.7   0.5    2.2e-09   37.4   0.0    1.9  2  PF13649.1  Methyltransferase domain
    8.9e-09   34.9   0.4      3e-08   33.2   0.3    1.8  1  PF13847.1  Methyltransferase domain
    1.3e-07   32.0   0.1    7.3e-07   29.6   0.0    1.9  2  PF12847.2  Methyltransferase domain
     0.0036   16.3   0.2      0.005   15.8   0.2    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0043   16.9   0.1     0.0092   15.8   0.0    1.7  1  PF13659.1  Methyltransferase domain
     0.0086   15.3   0.2      0.014   14.6   0.1    1.3  1  PF05175.9  Methyltransferase small domain
  ------ inclusion threshold ------
      0.025   13.8   0.0       0.04   13.1   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
      0.033   13.0   0.0      0.039   12.8   0.0    1.1  1  PF00398.15 Ribosomal RNA adenine dimethylase
      0.051   12.3   0.1      0.075   11.7   0.0    1.1  1  PF03291.11 mRNA capping enzyme
      0.084   11.7   0.2       0.33    9.7   0.0    1.9  2  PF07091.6  Ribosomal RNA methyltransferase (FmrO)


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.6   5.9e+03      36      61 ..      17      44 ..       5      44 .. 0.66
   2 !   43.6   0.0   2.6e-14   2.7e-11       1      92 [.      45     146 ..      45     149 .. 0.93
   3 ?   -2.5   0.1       6.2   6.5e+03      61      70 ..     189     198 ..     187     218 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 5.6
    PF08241.7 36 kerlkeegle..lvvadaeelpfednsf 61
                 +++++e +++  +v a a+ l+f d+s+
  MMETSP0890-20130614|23711_1 17 RQKYSEGDPTwdTVAAIARGLNFTDKSV 44
                 4555555555666777788889988875 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 2.6e-14
    PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle.lvvadaeelpfedn.....sfDvvvssevlehl...edpekalkeiaRvLkpgGl 92 
                  LdvGcG g+++e+l ++   ++++g+D se++++ ak+++ +e  + + v+da+++ + d+     + Dv ++s+v+ hl   +d +++l  ++R +kp+  
  MMETSP0890-20130614|23711_1  45 LDVGCGPGINAEQLLNKcGISSYVGFDASEAQINAAKNAGLDETKTkFFVGDACSTALTDDenndlQLDVALASFVVPHLastQDIKALLTFCKRFTKPNAS 146
                  8**************************************99998889*****9999888665778899*******************************965 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 6.2
    PF08241.7  61 fDvvvssevl 70 
                  fDvv+s  ++
  MMETSP0890-20130614|23711_1 189 FDVVFSPDFI 198
                  8999886555 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.7e-14   1.8e-11      12     117 ..      29     152 ..      16     189 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.7e-14
    PF13489.1  12 llerllar.lkpggrvLDiGcGtGillell.aengf.dvtgvDpspaaigk................akqaqksqfdeed.......aaepagkfdlivarevlehvp...dpeellrqiaellkpgGylllstp 117
                  ++++++   ++++++vLD+GcG+Gi++e l  ++g  +++g+D s+a+i++                +           +       +++++ + d+ +a++v  h+    d ++ll+  ++  kp+   +++  
  MMETSP0890-20130614|23711_1  29 TVAAIARGlNFTDKSVLDVGCGPGINAEQLlNKCGIsSYVGFDASEAQINAaknagldetktkffvgD-----------AcstaltdDENNDLQLDVALASFVVPHLAstqDIKALLTFCKRFTKPNASTYVVIG 152
                  5555553348*****************9888*****77************977776666544333322...........03333333666778***************776799************977766654 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   5.2e-13   5.4e-10       1      97 [.      45     145 ..      45     147 .. 0.80
   2 ?   -0.9   0.0         2   2.1e+03      68      68 ..     208     208 ..     172     239 .. 0.59

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 5.2e-13
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...ssfDvvvasnvlhhl...kdirevldnirklLkpgG 97 
                  L++GcG G +++ ll+k+  ++y+g D s+++i++ak+   ++   +++++  +a++   +d +    + Dv++as+v+ hl   +di+++l  +++  kp++
  MMETSP0890-20130614|23711_1  45 LDVGCGPGINAEQLLNKCGISSYVGFDASEAQINAAKNAGLDE--TKTKFFVGDACSTALTDDEnndLQLDVALASFVVPHLastQDIKALLTFCKRFTKPNA 145
                  8********************************4444444444..44444444444444444444678*********************************97 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2
    PF08242.7  68 D 68 
                  D
  MMETSP0890-20130614|23711_1 208 D 208
                  3 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   2.1e-12   2.2e-09       1     100 [.      44     144 ..      44     145 .. 0.88
   2 ?   -2.2   0.0       4.6   4.9e+03      67      83 ..     188     205 ..     183     223 .. 0.57

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 2.1e-12
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqada..ralpfeeg...efdlvvcaglslehlspkqlealleeiarvlkpg 100
                  +ld+GCG+G ++++l +++  g+ ++++g D se ++++ak+   +++ k+kf+++da  +al  +e+   + d+ + +  + +  s ++++all  + r +kp+
  MMETSP0890-20130614|23711_1  44 VLDVGCGPGINAEQLLNKC--GI-SSYVGFDASEAQINAAKNAGLDET-KTKFFVGDAcsTALTDDENndlQLDVALASFVVPHLASTQDIKALLTFCKRFTKPN 144
                  79*************9998..97.********************8887.*********887775433334699999999998889*************9999985 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.6
    PF13649.1  67 efdlvvc..aglslehlsp 83 
                  +fd+v++  +    ++l++
  MMETSP0890-20130614|23711_1 188 KFDVVFSpdFIV-PAYLWD 205
                  688888844222.334443 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.3   2.8e-11     3e-08       4      92 ..      41     130 ..      39     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.8e-11
    PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe..nveFiqgdiee.lekl.le..esfDlvisnevlnaladpqkv 92 
                  +++vlD+GCG G  + +l  + +  + +vG+D se +i+ Ak+     g++  +++F +gd+ + + +   +   + D+ ++  v+ +la  q++
  MMETSP0890-20130614|23711_1  41 DKSVLDVGCGPGINAEQLL-NKCGISSYVGFDASEAQINAAKN----AGLDetKTKFFVGDACStALTDdENndLQLDVALASFVVPHLASTQDI 130
                  579****************.5566688****************....4555559********998777777789999999999888666666554 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   6.9e-10   7.3e-07       2      98 ..      41     138 ..      40     152 .. 0.73
   2 ?    0.1   0.0         1   1.1e+03      65      85 ..     183     203 ..     163     235 .. 0.62

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 6.9e-10
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaksldleeriellqgda.keelsller....fDavllkg.ltldallal....deprrvlealp 98 
                  +k++lD+GcG G  +  l+++ +g   +vg+D+se+ ++ a+++      e++ ++  gda + +l+++e+     D++l++  +      ++    ++ +++l  ++
  MMETSP0890-20130614|23711_1  41 DKSVLDVGCGPGINAEQLLNK-CGISsYVGFDASEAQINAAKNAG---LDETKTKFFVGDAcSTALTDDENndlqLDVALASFvV------PHlastQDIKALLTFCK 138
                  689*****************7.66666**************9777...45699********976666666667778888888833......22122233444455444 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1
    PF12847.2  65 lsllerfDavllkg.l...tldall 85 
                  ++ + +fD+v+  +          l
  MMETSP0890-20130614|23711_1 183 WKTGVKFDVVFSPDfIvpaY----L 203
                  34444499999988333331....2 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   4.7e-06     0.005     161     231 ..      40     117 ..      29     139 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.7e-06
    PF06325.8 161 egeevlDvGtGSGiLaiaa.akLgakkvvavDiDevAvkvakeNaelNkveaklev......allkelpk.ekadviva 231
                  ++++vlDvG+G Gi a     k g ++ v+ D  e  +++a +Na l ++++k+ v      al++++++  + dv +a
  MMETSP0890-20130614|23711_1  40 TDKSVLDVGCGPGINAEQLlNKCGISSYVGFDASEAQINAA-KNAGLDETKTKFFVgdacstALTDDENNdLQLDVALA 117
                  6789**********997652689***************987.5999999999887744332112333222355566555 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.8e-06    0.0092       2     114 ..      42     150 ..      41     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8.8e-06
    PF13659.1   2 drvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaer.vrvrqgdlrdlaellrags....fdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvli 114
                   +vld+gcG G+ + ++l     +  +g++ +++ +++a+ n+   gl+e+ + +++gd+  +a l++++      d+ +++    +      a +++ +a+l  + r+ kp+++ +++
  MMETSP0890-20130614|23711_1  42 KSVLDVGCGPGINAEQLLNKCgISSYVGFDASEAQINAAK-NA---GLDETkTKFFVGDACSTA-LTDDENndlqLDVALASFVVPHL-----ASTQDIKALLTFCKRFTKPNASTYVV 150
                  57****************99879*******9988877765.33...443333899999998887.34443333334444444443322.....23345566666777777777666666 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.3e-05     0.014      31      94 ..      40     101 ..      29     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.3e-05
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT- CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleev 94 
                  ++++vlD+GcG G+ + +l++++   + + +D++++ +++ak n+   + + ++++  d+ ++ 
  MMETSP0890-20130614|23711_1  40 TDKSVLDVGCGPGINAEQLLNKCGISSYVGFDASEAQINAAK-NAGLDETK-TKFFVGDACSTA 101
                  5678*********************99********9998876.55555555.678888877665 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05      0.04      15      58 ..      42      86 ..      29      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.8e-05
    PF07021.7 15 srvldlGcGdGellellkeekqvdgr.GleldeegvaecvakGls 58
                   vld+GcG G   e l ++ +++++ G + +e+ ++++ + Gl 
  MMETSP0890-20130614|23711_1 42 KSVLDVGCGPGINAEQLLNKCGISSYvGFDASEAQINAAKNAGLD 86
                 56**********99999999***9977************999986 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.039      22      91 ..      33     103 ..      16     150 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.7e-05
   PF00398.15  22 IldklnlqekdtvlEigpGkGalTeeLakra..kqvvalEidsklvkrlqkklakdenvevvhqDflkfstp 91 
                  I++ ln  +++ vl++g G+G+  e+L + +   ++v ++  +  ++  +++  ++++++   +D+  + + 
  MMETSP0890-20130614|23711_1  33 IARGLNF-TDKSVLDVGCGPGINAEQLLNKCgiSSYVGFDASEAQINAAKNAGLDETKTKFFVGDACSTALT 103
                  5555554.5678*******************88888888887777777777666778777777777666655 PP

>> PF03291.11  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05     0.075      63     103 ..      40      81 ..      31      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.1e-05
   PF03291.11  63 nkrkvLdldcGkGgDLeK.yekggIsklvgtDidessieeaq 103
                   +++vLd++cG G   e   +k gIs++vg D +e+ i+ a+
  MMETSP0890-20130614|23711_1  40 TDKSVLDVGCGPGINAEQlLNKCGISSYVGFDASEAQINAAK 81 
                  6789*********9998835899**************99987 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00031      0.33     107     167 ..      42     101 ..      29     143 .. 0.70
   2 ?   -0.5   0.0      0.43   4.6e+02     151     178 ..     220     247 ..     199     249 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00031
    PF07091.6 107 asvlDlaCgLnplavpwmklaedatylasDidkalvefieaflallgvegevevrdlladv 167
                  +svlD++Cg    a   +++    +y+++D ++a +++ +++    ++++++ v d  +  
  MMETSP0890-20130614|23711_1  42 KSVLDVGCGPGINAEQLLNKCGISSYVGFDASEAQINAAKNAGLD-ETKTKFFVGDACSTA 101
                  79******9766666556666667************999877543.466666666655442 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.43
    PF07091.6 151 llgvegevevrdlladvpeeeaDvaLll 178
                  +  ++ + +v+dl +  p+e+a v+++l
  MMETSP0890-20130614|23711_1 220 VDTINAWEVVKDLGTSLPKEAAQVMFVL 247
                  3345666778899999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.76
# Mc/sec: 791.43
//
Query:       MMETSP0890-20130614|23736_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-06   26.1   0.0    1.1e-05   25.3   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    5.9e-05   22.7   0.0    0.00019   21.1   0.0    1.8  3  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.6e-09   1.1e-05      10      78 ..      94     163 ..      88     165 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.6e-09
                  SH---EEEESSTTSSSSEEEEESTTTHHTTTTS.BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS.EEEE CS
   PF00595.19  10 gglGfslkggsdkrdkgifvsevvpggaaeagg.lkeGDkIlsvNgvdvenvshdeavqaikgkkg.evtL 78 
                  +++G+   +++  +  g+fv+++  +gaa+++g + +GD++++v+ +   +   d +  ai+++++ +v+L
  MMETSP0890-20130614|23736_1  94 KPMGIVFEENDPTS-GGVFVASLADDGAAATDGtILPGDQLVAVGPTLCKGCDFDSCLSAIQDSTDdNVKL 163
                  68999999999997.*****************************977777766666666666666666665 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.5   3.4e+03      35      42 ..      50      57 ..      37      73 .. 0.61
   2 ?   -2.8   0.0       0.8   5.5e+03       2      15 ..      59      71 ..      58      86 .. 0.68
   3 !   21.1   0.0   2.8e-08   0.00019       3      73 ..      96     169 ..      94     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.5
    PF13180.1 35 GDiilkvd 42
                 +D ++ +d
  MMETSP0890-20130614|23736_1 50 DDRVTPFD 57
                 55555554 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.8
    PF13180.1  2 diGvsvsqlentrg 15
                 ++G+ v+ +e+ ++
  MMETSP0890-20130614|23736_1 59 WLGIDVRSEET-EE 71
                 58888888875.44 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 2.8e-08
    PF13180.1   3 iGvsvsqlen.trgvlvvsVkessPaakag.lkpGDiilkvdgkkvksltdlkslll..kkkpGdtvkltvlRdg 73 
                  +G+ ++++++ ++gv v+s + ++ aa  g + pGD++++v+ +   ++ d++s l+  + + +d+vkl + R+g
  MMETSP0890-20130614|23736_1  96 MGIVFEENDPtSGGVFVASLADDGAAATDGtILPGDQLVAVGPTLC-KGCDFDSCLSaiQDSTDDNVKLVFFRGG 169
                  8*********999****************************99988.5556665555448899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.76
# Mc/sec: 614.85
//
Query:       MMETSP0890-20130614|23756_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.73
# Mc/sec: 889.61
//
Query:       MMETSP0890-20130614|23761_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.4   1.7       0.02   14.4   1.2    3.7  4  PF14145.1 YrhK-like protein


Domain annotation for each model (and alignments):
>> PF14145.1  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1   0.00052       7.1      38      57 ..      56      75 ..      45      77 .. 0.83
   2 ?    5.1   1.3    0.0012        16      39      57 ..      57      75 ..      55     106 .. 0.53
   3 ?   14.4   1.2   1.5e-06      0.02       9      51 ..     110     153 ..     102     159 .. 0.87
   4 ?   -1.3   1.3      0.12   1.6e+03      21      42 ..     172     196 ..     168     208 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00052
    PF14145.1 38 lFiiGSilflirpvirlire 57
                  F+ GS+++l+++v+ + ++
  MMETSP0890-20130614|23761_1 56 IFVCGSLAMLFSGVAMVYHD 75
                 69**********99877665 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0012
    PF14145.1 39 FiiGSilflirpvirlire 57
                 F+ GS+++l+++v+ + ++
  MMETSP0890-20130614|23761_1 57 FVCGSLAMLFSGVAMVYHD 75
                 5555555555555444333 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.5e-06
    PF14145.1   9 tvvdliggllFliGSilffyp.elytaavwlFiiGSilflirpv 51 
                   ++ l+g ll+++G ++++++   + ++ ++F  G il + ++ 
  MMETSP0890-20130614|23761_1 110 SIIHLFGTLLYIVGALYYYPEmRDKFIGNVFFATGGILIAMACF 153
                  57889***************99999*************998876 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.12
    PF14145.1  21 iGSilffypely...taavwlFiiG 42 
                   GS+ +f+ ++    +++  +  +G
  MMETSP0890-20130614|23761_1 172 LGSFSYFIAAFSaahVVGYLFATAG 196
                  4666666665443334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.90
# Mc/sec: 601.75
//
Query:       MMETSP0890-20130614|23762_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-12   45.6  10.6    1.3e-11   44.0   7.3    1.9  1  PF01363.16 FYVE zinc finger
     0.0036   16.7   0.0     0.0068   15.8   0.0    1.5  1  PF01764.20 Lipase (class 3)
  ------ inclusion threshold ------
        0.3   11.9   2.2       0.62   10.8   1.5    1.5  1  PF12868.2  Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   7.3   2.9e-15   1.3e-11       2      65 ..     312     383 ..     311     387 .. 0.91

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 2.9e-15
   PF01363.16   2 kwvpdaeakkCeiCakkFsl..........trrrhhCrlCGkvvCskCsskrvekleeeaaeekevrvCkeCle 65 
                  +w+p +++++C+ C++kF++           r +h+Cr+CG +vC+ Cs++r + +  + +  ++ r+C++C+ 
  MMETSP0890-20130614|23762_1 312 PWQPFHDTDSCSCCQAKFTWhvtssseaqqYREKHNCRNCGLLVCDPCSQQRKPLP--RLGLLEPSRICDRCHF 383
                  7*****************9877888777768**********************888..99************85 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.5e-06    0.0068      95     139 ..       2      41 ..       1      44 [. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.5e-06
                  TEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S- CS
   PF01764.20  95 lvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlpp 139
                  ++ +y f++P + + ++a+  +       v +vv ++D+vprl +
  MMETSP0890-20130614|23762_1   2 KLHCYCFATPACVDVHLADQTK---D--LVTSVVLHDDVVPRLTA 41 
                  678***************9999...3..4889**********976 PP

>> PF12868.2  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   0.00014      0.62       2      58 ..     137     195 ..     136     211 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
    PF12868.2   2 srSRsRdlaeaaLaaaG.vGyAAhkys.qrrerkkaekererkkededysdsyeesydp 58 
                  +r R R+   aaLaaa  +G A + ++  + +  +a+   e++ +d++ +d ++e+ d+
  MMETSP0890-20130614|23762_1 137 ERKRHRTARIAALAAAQaAGVAVRCAEeTKDDDDQADTSSESTSSDDEFRDCLQEDNDE 195
                  5889999999999999879***9999966777889999999999999999*99998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1152  (0.0842598); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.78
# Mc/sec: 1305.71
//
Query:       MMETSP0890-20130614|23767_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   27.4   0.0    3.1e-06   26.9   0.0    1.2  1  PF03567.9 Sulfotransferase family
  ------ inclusion threshold ------
      0.013   14.0   0.2       0.02   13.4   0.1    1.3  1  PF06990.6 Galactose-3-O-sulfotransferase


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.5e-10   3.1e-06      43     193 ..      30     199 ..       6     221 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 4.5e-10
    PF03567.9  43 inetwlfsrrstgwscglfadltelssteipkrld.k.............yfkfifvRdPfeRllSayrnkcvgdkr...rgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnla..........perer.nnrhwapacd.lctrmladydlvgcyetleedlnailrllall 193
                  ++++w +   s  +++  f++l + + t++  + + k              ++ i++RdP++R++S+y+ +  +dk    + +   ++ i   +r  ++   ++ + + f +F++    l+          ++ ++  + h    ++ ++++ ++ ++l+ ++e+l e    +  +l+  
  MMETSP0890-20130614|23767_1  30 KRDEWWK--LSARHQQQWFKKLRKEQGTRF--IATeKgfptpdnllaplgLVYAIVIRDPVARFVSYYFWRW-RDKSffaNLRALATSYISSTFR--PAVARLQSNAPAFADFVDSEMPLDgyyirrllgiEDPTFsVDIH---HLNqAKATLENVFSLILITENLAEFGPLLSSSLGWQ 199
                  4455543..445566777777766666665..33323788899999999999***************98887.5555788778888999999999..33333355668888888733333344665555555555566777...56669999***************9999999888883 PP

>> PF06990.6  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     3e-06      0.02     144     264 ..      71     201 ..      51     222 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3e-06
    PF06990.6 144 lvPtdtvyvtilrePaallessfsyy...kqyvPafrkvpaad.leaflraPeayydasehravyaknllffd.......lGydnerdprseeayvrerileverrfrlvliaeyldeslvllrrllaWeld 264
                  l P   vy  ++r+P+a + s + +    k++   +r ++++     f  a  +   ++  +a ++   +  d       lG   ++  + +  ++++  + +e++f+l+li+e l e   ll   l W+  
  MMETSP0890-20130614|23767_1  71 LAPLGLVYAIVIRDPVARFVSYYFWRwrdKSFFANLRALATSYiSSTFRPAVARLQSNAPAFADFVDSEMPLDgyyirrlLG-IEDPTFSVDIHHLNQAKATLENVFSLILITENLAEFGPLLSSSLGWQHT 201
                  567788999**********998665323244555666666666334566666677777777999999999888544455334.56777788888999999*****************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 686.76
//
Query:       MMETSP0890-20130614|23770_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-17   60.3   6.9    9.6e-06   25.1   0.0    5.5  5  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.065   12.6   0.0        4.3    6.8   0.0    3.0  3  PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.74     5e+03      16      33 ..     158     199 ..     153     200 .. 0.56
   2 !   11.0   0.1   4.1e-05      0.28      16      38 ..     203     225 ..     202     225 .. 0.97
   3 !    8.8   0.2    0.0002       1.3       9      39 .]     340     381 ..     334     381 .. 0.79
   4 !   14.5   0.0   3.1e-06     0.021      17      39 .]     403     425 ..     401     425 .. 0.94
   5 !   25.1   0.0   1.4e-09   9.6e-06       3      35 ..     431     463 ..     429     471 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.74
                  EEEEESS........................STEEEEEETTS CS
   PF00400.27  16 cvafspd........................gpllasgSrDg 33 
                  ++ +s d                        g++ a g++D+
  MMETSP0890-20130614|23770_1 158 SLVISRDarlaaialndgpaliqrlpvakkrGQITAIGCSDK 199
                  555555544444444444555555555555566777777776 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.1e-05
                  EEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  16 cvafspdgpllasgSrDgtirlW 38 
                  +vafs d ++l++   D+t+ +W
  MMETSP0890-20130614|23770_1 203 AVAFSYDTNWLVTTATDSTVEIW 225
                  69********************* PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0002
                  SSSSSEEEEEEESS...........STEEEEEETTSEEEEEE CS
   PF00400.27   9 gHtspVtcvafspd...........gpllasgSrDgtirlWd 39 
                  +H +pV c+a   +             ++a++  Dg i +Wd
  MMETSP0890-20130614|23770_1 340 AHAKPVHCLATPEPsaatsiipqhhFDVFATAATDGVIAIWD 381
                  6777777777777777777777777789*************9 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 3.1e-06
                  EEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  17 vafspdgpllasgSrDgtirlWd 39 
                  +afsp  ++lasgS+D++  ++d
  MMETSP0890-20130614|23770_1 403 IAFSPCLRYLASGSEDNCALIYD 425
                  89***************999987 PP

  == domain 5    score: 25.1 bits;  conditional E-value: 1.4e-09
                  EEEEEESSSSSEEEEEEESSSTEEEEEETTSEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgti 35 
                  +++ l+gH++ V++va++p  p ++s+S+Dg +
  MMETSP0890-20130614|23770_1 431 PISRLKGHSDVVSSVAWNPLFPQFVSASYDGRL 463
                  57789*************************976 PP

>> PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.5   3.4e+03      26      40 ..     168     182 ..     167     186 .. 0.84
   2 ?    2.0   0.0      0.02   1.4e+02      22      37 ..     364     379 ..     363     380 .. 0.89
   3 ?    6.8   0.0   0.00063       4.3      14      36 ..     442     464 ..     432     466 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.5
    PF12894.2  26 iAlatekgelalyRl 40 
                   A+a ++g  +++Rl
  MMETSP0890-20130614|23770_1 168 AAIALNDGPALIQRL 182
                  59999***9999998 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.02
    PF12894.2  22 tmDLiAlatekgelal 37 
                  ++D +A+a ++g +a+
  MMETSP0890-20130614|23770_1 364 HFDVFATAATDGVIAI 379
                  69**********8876 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.00063
    PF12894.2  14 vkfiswcPtmDLiAlatekgela 36 
                  v++++w+P+++ +  a+ +g l+
  MMETSP0890-20130614|23770_1 442 VSSVAWNPLFPQFVSASYDGRLL 464
                  89*********999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:01.04
# Mc/sec: 1103.71
//
Query:       MMETSP0890-20130614|23793_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089   12.9   1.2       0.22   11.6   0.9    1.7  1  PF07554.8 Uncharacterised Sugar-binding Domain


Domain annotation for each model (and alignments):
>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   1.6e-05      0.22       6      45 ..     152     190 ..     147     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.6e-05
                  CCCCCHHHHTC-HHHHHHHHHHHHHHHHHH...TSTTTTC CS
    PF07554.8   6 tlkassnysnadtekknaynnAitaAkaiLnntngpnatq 45 
                  +l ++ +y  a ++++na+++A ++++ +L+n++ ++a+ 
  MMETSP0890-20130614|23793_1 152 NLRQTNQY-GARNDAWNALDDARAEVTYLLENSDSDTADL 190
                  66677775.9************************777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 782.34
//
Query:       MMETSP0890-20130614|23808_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.9   0.3       0.14   11.7   0.2    1.1  1  PF10126.4 Uncharacterized protein, homolog of nitrogen regulatory protein PII


Domain annotation for each model (and alignments):
>> PF10126.4  Uncharacterized protein, homolog of nitrogen regulatory protein PII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     1e-05      0.14      64      94 ..      20      50 ..      10      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
    PF10126.4 64 sedavlintvvseekvekikelleeklaner 94
                  ++a+l+  +v++e+ ++i   +e +la er
  MMETSP0890-20130614|23808_1 20 KSNAILVKNIVNQEQRQRIMAVIESELAVER 50
                 5689***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 175.51
//
Query:       MMETSP0890-20130614|23823_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-23   80.6   8.6    6.4e-07   28.9   0.0    5.5  5  PF00400.27 WD domain, G-beta repeat
    0.00021   19.5   1.0      0.029   12.4   0.3    2.9  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   3.5e-07    0.0024      26      39 .]       1      14 [.       1      14 [. 0.97
   2 !    8.3   0.1   0.00029         2       2      39 .]      19      53 ..      18      53 .. 0.92
   3 !   28.9   0.0   9.3e-11   6.4e-07       2      39 .]      58      94 ..      57      94 .. 0.94
   4 !   14.1   0.0   4.3e-06     0.029       9      38 ..     104     132 ..     100     133 .. 0.91
   5 !   13.2   0.0   8.2e-06     0.056       7      39 .]     141     172 ..     136     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.5e-07
                 EEEEETTSEEEEEE CS
   PF00400.27 26 lasgSrDgtirlWd 39
                 las+SrD+t+r+Wd
  MMETSP0890-20130614|23823_1  1 LASASRDKTLRIWD 14
                 8************9 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00029
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 +c+++++   s++ +++ s     +a g+ D   r+W+
  MMETSP0890-20130614|23823_1 19 DCIQVIKCE-STILSLSLSNG--KVAGGGIDYIARVWN 53
                 688888888.***********..**************7 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 9.3e-11
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 e+  ++ gH+++++ v   pd   l+++S D+t rlW+
  MMETSP0890-20130614|23823_1 58 EQMCIFVGHKGWIRGVVLRPD-GTLITASQDKTARLWS 94
                 66789****************.***************7 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 4.3e-06
                  SSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlW 38 
                   Ht+ V +++   d  ++a+gS D t+r++
  MMETSP0890-20130614|23823_1 104 KHTDEVFAICGFAD-GRVATGSGDATVRIF 132
                  69999999999999.**************8 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 8.2e-06
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  l+ H ++V ++a     + l+sg +D+t+ lW+
  MMETSP0890-20130614|23823_1 141 LHFHDKAVISLAQPSA-STLCSGAEDNTVVLWN 172
                  5556777777777777.9**************7 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   4.2e-06     0.029     235     257 ..       2      24 ..       1      64 [. 0.84
   2 !    4.7   0.0   0.00092       6.3     233     253 ..      80     100 ..      75     186 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.2e-06
    PF11715.3 235 ftlsrDgkLRvWnletgqclrtt 257
                  ++ srD++LR+W+  tg c++++
  MMETSP0890-20130614|23823_1   2 ASASRDKTLRIWDCQTGDCIQVI 24 
                  789****************7665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00092
    PF11715.3 233 fvftlsrDgkLRvWnletgqc 253
                   ++t s+D++ R+W+ ++ ++
  MMETSP0890-20130614|23823_1  80 TLITASQDKTARLWSATGEMI 100
                  578************999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.99
# Mc/sec: 658.39
//
Query:       MMETSP0890-20130614|23832_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   79.4   0.0    2.8e-22   78.5   0.0    1.5  1  PF05743.8  UEV domain
    5.2e-17   61.0   0.6    5.2e-17   61.0   0.4    1.9  2  PF09454.5  Vps23 core domain
    0.00031   20.0   0.0    0.00063   19.0   0.0    1.5  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   6.2e-26   2.8e-22      31     121 .]      47     138 ..      32     138 .. 0.94

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 6.2e-26
                  EEEEEE--EE--------EE-EEEE--TTTTTS--EEEE-GCC--TSGGGG.GB-----B--HHHHS--TTT--HHHHHHHHHH-------X CS
    PF05743.8  31 lllnlkGtipveykgatyniPiliwvpesyPveaPivyvkptksmvikkne.nvdaqGrvylpyLeeWkreksnlvslvqelaqafeeepPv 121
                  l l+l+Gt+ ++y+ga+yniPi+++++  yP  aP + v pt++m+++ n+ nvd++G ++ +yL++W+ ++s+l++l    ++ f+++pP+
  MMETSP0890-20130614|23832_1  47 LALCLSGTLGIRYHGAVYNIPIELYIVPGYPSVAPRLQVVPTENMQLRANHdNVDSNGILHCEYLDNWHARTSTLTELCAIASSFFSASPPL 138
                  579*****************************************************************************999999999995 PP

>> PF09454.5  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.67     3e+03      24      35 ..      20      31 ..      18      36 .. 0.83
   2 !   61.0   0.4   1.1e-20   5.2e-17       4      64 ..     252     312 ..     251     312 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHH CS
    PF09454.5 24 ieDtiyvLeral 35
                 ++D++++Le+ l
  MMETSP0890-20130614|23832_1 20 CDDVLILLETDL 31
                 79*****99866 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 1.1e-20
                  EE-S----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHHHHHHH CS
    PF09454.5   4 ieaedplsnQllelvAedeAieDtiyvLeralkrgkidleeylkkvReLareqFlkRalik 64 
                  ++++d++s+Qll  +Ae  AieD +y+L++ l +g idl+ +l++vR L+  qF ++a +k
  MMETSP0890-20130614|23832_1 252 VTCTDVVSKQLLSALAESTAIEDLLYALDEFLYQGIIDLDIFLREVRRLSNAQFKLKAIMK 312
                  6899******************************************************985 PP

>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-07   0.00063      32     106 ..      49     129 ..      37     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.4e-07
                  EEE---TTSTTGGB-EEE..EEE--TTTTTS--EEEESS......--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHH CS
   PF00179.21  32 vvikgpegtpYegglFkl..kikfpeeYPfkPPkvkfvt......kifHPnvdetGeicldiLkeekWspaltlesvLlsiqs 106
                  +++ g  g  Y+g+++++  ++ + + YP  +P++++v       +  H nvd++G +  + L+  +W + ++  + L +i s
  MMETSP0890-20130614|23832_1  49 LCLSGTLGIRYHGAVYNIpiELYIVPGYPSVAPRLQVVPtenmqlRANHDNVDSNGILHCEYLD--NWHARTSTLTELCAIAS 129
                  5677888889******972256789**********8776677777*******************..59996665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      473  (0.0345963); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:01.68
# Mc/sec: 449.32
//
Query:       MMETSP0890-20130614|23847_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-28   98.1   1.9    1.5e-16   60.5   1.1    2.2  2  PF03194.10 LUC7 N_terminus
     0.0012   18.2   1.6     0.0012   18.2   1.1    2.3  3  PF12230.3  Pre-mRNA splicing factor PRP21 like protein
  ------ inclusion threshold ------
      0.092   12.5   1.4       0.31   10.8   0.3    2.3  2  PF08838.5  Protein of unknown function (DUF1811)


Domain annotation for each model (and alignments):
>> PF03194.10  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.1e-12   5.1e-09       5      50 ..       8      54 ..       4      59 .. 0.89
   2 !   60.5   1.1   3.4e-20   1.5e-16      59     237 ..      82     255 ..      73     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.1e-12
   PF03194.10  5 RklldeLmGsnrngdeseak.vkfedrevCrlylvklCPhDlfqntk 50
                  +lldeLmG++rn   s +   kf +++vC++ylv+l P+ l++nt+
  MMETSP0890-20130614|23847_1  8 SALLDELMGQERNAALSVKAkKKFWEDDVCKFYLVGLSPYNLLKNTR 54
                 589*********99987554499***********************9 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 3.4e-20
   PF03194.10  59 vHdeklrkdYerasksqdlk.kyeeealealevlvhdvdrkidkakqrleetqeeqtkeaaelkaeelaeleeeinkllkeaeelgeegkvdeaqklmeeveelkekkeeleqqadeaknaapssaqateqklrvCeiCgafLsvlDad..rRladHfgGKlHlGyvklReklaelkeakak 237
                  v d +lr++Y+ ++++++ k  y+  +++ l  l+ ++dr+i+++++++++ + +   e+     +++ e+e+ei+ +++e e+lge g+++e+++l +++e lk kk+ +e   +  kn++p+sa    q++ vC+i g  +  + a+    + +H+       + +lRe +++l ++++ 
  MMETSP0890-20130614|23847_1  82 VCDINLRSQYQAENEEDKNKyGYNFLLFNCLTYLIRQMDRRISINREKIAKAEADAIPEEI---IKQIMEIEQEIKTKIQESEQLGEVGEIEESMRLANQAETLKIKKRTIET--EALKNNIPNSA---GQRFTVCNITGELIECGAAKdtAWMTSHIESSDYQAWKTLREWYTNLSKERDG 255
                  77889*****99999888886788888899*******************998877666554...59*********************************************99..8999******8...9**********998876554114688999999999999999999999888775 PP

>> PF12230.3  Pre-mRNA splicing factor PRP21 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.4   6.5e+03     146     161 ..      85     100 ..      74     102 .. 0.53
   2 !   18.2   1.1   2.7e-07    0.0012     101     179 ..     135     217 ..     112     248 .. 0.68
   3 ?    1.2   0.0     0.041   1.9e+02     108     160 ..     271     324 ..     260     334 .. 0.65

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.4
    PF12230.3 146 lkirkdykkkaekkka 161
                  ++ r++y+ ++e++k+
  MMETSP0890-20130614|23847_1  85 INLRSQYQAENEEDKN 100
                  4445555555444443 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.7e-07
    PF12230.3 101 eaaaeeeeeeeeee.........edeeeekkeesaeksepk..vkemkikaaeesrlkirkdykkkaekkka..ekpkkkmikcpitgeliP 179
                  ++a  +e      e         ++++ + +e ++  +     ++e  + a++ ++lki+k + ++++ k++  +   +++++c itgeli+
  MMETSP0890-20130614|23847_1 135 ADA-IPE------EiikqimeieQEIKTKIQESEQLGE--VgeIEESMRLANQAETLKIKKRTIETEALKNNipNSAGQRFTVCNITGELIE 217
                  222.122......2222222222333333333333333..2557788888899999******9999999988899999*************7 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.041
    PF12230.3 108 eeeeeeeedeeeekkeesaeksepk.vkemkikaaeesrlkirkdykkkaekkk 160
                  e++ +++ed+  ++k++  e+++       ++++a++ r   r+dyk  ++k +
  MMETSP0890-20130614|23847_1 271 ESTSAKNEDTHLNTKRQRPEDNSSHrYDDFPLREAGGGRTHFRQDYKYDMNKYR 324
                  23333334444444444444444434578999*************999988866 PP

>> PF08838.5  Protein of unknown function (DUF1811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.26   1.2e+03      11      34 ..     118     141 ..     113     147 .. 0.80
   2 ?   10.8   0.3   6.8e-05      0.31      17      79 ..     151     214 ..     136     218 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.26
                  HHHHHHHHHHHHHHHHHH---HHH CS
    PF08838.5  11 eLkeeiaklkekarkaeqlGivne 34 
                  ++ + i+  +ek  kae   i +e
  MMETSP0890-20130614|23847_1 118 QMDRRISINREKIAKAEADAIPEE 141
                  677889999999999998776655 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6.8e-05
                  HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHS-GGGS----EE.EET.TSS-EEEEEEE--- CS
    PF08838.5  17 aklkekarkaeqlGivnelavlerkialakaYlvdpekfkkgeiY.kleedeeetfkieylnGv 79 
                  +++k k + +eqlG v e++  +r +  a++  + +++++++ +  ++ ++ +++f++  + G 
  MMETSP0890-20130614|23847_1 151 QEIKTKIQESEQLGEVGEIEESMRLANQAETLKIKKRTIETEALKnNIPNSAGQRFTVCNITGE 214
                  457899**********************************999852799999999999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1084  (0.0792861); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.89
# Mc/sec: 1133.56
//
Query:       MMETSP0890-20130614|23865_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-44  149.0   0.1    4.8e-44  148.8   0.1    1.0  1  PF01597.14 Glycine cleavage H-protein
    1.7e-07   30.6   0.0    2.9e-07   29.8   0.0    1.4  1  PF00364.17 Biotin-requiring enzyme
    0.00021   20.8   0.0    0.00033   20.2   0.0    1.2  1  PF13375.1  RnfC Barrel sandwich hybrid domain


Domain annotation for each model (and alignments):
>> PF01597.14  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.1     1e-47   4.8e-44       3     121 ..      15     132 ..      13     133 .. 0.98

  Alignments for each domain:
  == domain 1    score: 148.8 bits;  conditional E-value: 1e-47
                  E-TTS-EE-----.---B---HHHHHH---EEEE----------TT-B---EEESS-EE--B-S----EEEE-GGGTT----TTT-TT-----EEE--S-GGGGGGSB-HHHHHHHHHH CS
   PF01597.14   3 ytkehewvkveedgvatvGitdfaqeelgdlvfvelpevgtevekgeslaavEsvKaasevyapvsGevvevNekledepeliNkdpyeegWlaklklknleeleeLlsaeeyekllke 121
                  ++k+he++k ++d + t+Git+ aq++lgd+vfv+lpevg++ +kg+++aavEsvK+a +vyap sG ++e+Ne+l+d p+l+N++p+e+gW +k+kl+++ e++ L+s+ +y++ lk+
  MMETSP0890-20130614|23865_1  15 FAKSHEYIKMNGD-TGTIGITSWAQNKLGDIVFVDLPEVGDHFQKGDTMAAVESVKSANDVYAPASGVITEINEALADTPDLVNESPLEDGWFVKMKLSDATEVSGLMSEADYAEHLKN 132
                  789*********9.*****************************************************************************************************9997 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.4e-11   2.9e-07      23      59 ..      51      87 ..      42      96 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 6.4e-11
                 -------CTSEEEEEESSSSEEEEEBS----EEEESS CS
   PF00364.17 23 kvGdkVkagqvlaeveamKmemeieapkaGvvkeilv 59
                 +vGd+ ++g+++a ve+ K  +++ ap++Gv++ei  
  MMETSP0890-20130614|23865_1 51 EVGDHFQKGDTMAAVESVKSANDVYAPASGVITEINE 87
                 79********************************975 PP

>> PF13375.1  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.2e-08   0.00033      47      89 ..      51      94 ..      47     101 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.2e-08
    PF13375.1 47 kvgdkVlkGqliaeaegfvsap.vhasvSGtVkaiekrpvphgs 89
                 +vgd+ +kG  +a  e++ sa+ v+a+ SG++++i++  + ++ 
  MMETSP0890-20130614|23865_1 51 EVGDHFQKGDTMAAVESVKSANdVYAPASGVITEINEALADTPD 94
                 79***************888866*************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 459.02
//
Query:       MMETSP0890-20130614|23900_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.5   0.0    3.3e-05   23.5   0.0    1.6  1  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.4e-09   3.3e-05       4      88 ..     100     191 ..      97     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.4e-09
                  E----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS..........B-SSEEEE..EEEEEEEEEEHHHHHHHHCC CS
   PF00027.24   4 fkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltge..........prsatvva..ltdvevlvipredfrellek 88 
                   +k+ev++ e++ + +++++ +G++kv +++ + +     +l+pGd+fG+  ++  +           ++ t++a   + ve l+++++d+++++++
  MMETSP0890-20130614|23900_1 100 AEKDEVLVAENASDWGFMVLTKGTCKVMRKGRQID-----TLEPGDTFGDKLSIAAKgkddlqdklhLAKDTIIAdsDDGVEYLSWDTTDILQMMAQ 191
                  5899*****************************98.....9*********99999999999999988888888887777899999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 980.33
//
Query:       MMETSP0890-20130614|23908_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   13.6   0.0      0.019   13.5   0.0    1.1  1  PF04515.7  Plasma-membrane choline transporter
      0.077   12.2   0.1       0.08   12.1   0.0    1.1  1  PF11359.3  Glycoprotein UL132
       0.15   11.3   2.3       0.23   10.7   1.6    1.4  1  PF04478.7  Mid2 like cell wall stress sensor
       0.15   10.5   3.1       0.21   10.0   2.2    1.1  1  PF04639.7  Baculoviral E56 protein, specific to ODV envelope
       0.25   10.8   2.5       0.31   10.5   1.7    1.1  1  PF02009.11 Rifin/stevor family
       0.34    9.9   1.8       0.47    9.5   1.2    1.1  1  PF01299.12 Lysosome-associated membrane glycoprotein (Lamp)
        0.4   10.0   3.4       0.55    9.5   2.4    1.3  1  PF02124.10 Marek's disease glycoprotein A
        5.2    6.8   7.9        1.7    8.4   1.4    2.4  2  PF12575.3  Protein of unknown function (DUF3753)


Domain annotation for each model (and alignments):
>> PF04515.7  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05     0.019      29      79 ..      23      73 ..      18     114 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
    PF04515.7 29 allkeaskavskvpslvlvpiltfvlllafivlwivvavalytsgepkekn 79
                 ++l+++s+ + +  + ++vpi+++++ +++++l++v+++++y s    ++ 
  MMETSP0890-20130614|23908_1 23 TILEASSSSTFSSGKSTVVPIIGIIIGIVVFALIMVCLIVVYISKFLLGNR 73
                 6888888888899999************************99886554443 PP

>> PF11359.3  Glycoprotein UL132
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.7e-05      0.08      32      78 ..      25      67 ..      15     126 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.7e-05
    PF11359.3 32 ttaleastqkepndvvekvlaivvyivsgvsilsllvvlvavlyssc 78
                   a  +st +  ++ v  +++i++ iv    +++l++v + v+y s 
  MMETSP0890-20130614|23908_1 25 LEASSSSTFSSGKSTVVPIIGIIIGIV----VFALIMVCLIVVYISK 67
                 344556666666677777777777655....5556666666666553 PP

>> PF04478.7  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   0.00013      0.23      51      73 ..      42      65 ..       6      76 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
    PF04478.7 51 iviGcvvGigv.Plllvilvliyi 73
                  +iG+++Gi v  l++v l+++yi
  MMETSP0890-20130614|23908_1 42 PIIGIIIGIVVfALIMVCLIVVYI 65
                 38*******985688899999998 PP

>> PF04639.7  Baculoviral E56 protein, specific to ODV envelope
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.2   0.00012      0.21     264     301 ..      27      64 ..      17      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
    PF04639.7 264 tkssnssksvsesllplilvigvvlllvligyvifkvl 301
                  ++ss++++s +++++p+i +i ++++++li++ ++ v+
  MMETSP0890-20130614|23908_1  27 ASSSSTFSSGKSTVVPIIGIIIGIVVFALIMVCLIVVY 64 
                  456777889999******99888888888877666544 PP

>> PF02009.11  Rifin/stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.7   0.00018      0.31     239     278 ..      24      65 ..      11      78 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00018
   PF02009.11 239 ikkketalieskfaslttaIiasviailiIvlvml..IIyli 278
                  i +++ + + s  +s+  +Ii+++i i++  l+m+  I+ +i
  MMETSP0890-20130614|23908_1  24 ILEASSSSTFSSGKSTVVPIIGIIIGIVVFALIMVclIVVYI 65 
                  444444444444788999***********9999953377777 PP

>> PF01299.12  Lysosome-associated membrane glycoprotein (Lamp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.2   0.00027      0.47     263     292 ..      33      65 ..      26      69 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00027
   PF01299.12 263 sadetsllvPii...VGaalaglvlivLiaYli 292
                  +++ +s +vPii   +G+++ +l+++ Li+  i
  MMETSP0890-20130614|23908_1  33 FSSGKSTVVPIIgiiIGIVVFALIMVCLIVVYI 65 
                  566779999987777*************98666 PP

>> PF02124.10  Marek's disease glycoprotein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.4   0.00032      0.55     176     208 ..      31      63 ..      14      67 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00032
   PF02124.10 176 spsassepvvisviavivglvvlgllvvlavvc 208
                  s+ +s+++ v+ +i++i+g+vv +l++v  +v+
  MMETSP0890-20130614|23908_1  31 STFSSGKSTVVPIIGIIIGIVVFALIMVCLIVV 63 
                  45568999**********999888766554443 PP

>> PF12575.3  Protein of unknown function (DUF3753)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.4   0.00098       1.7      40      69 ..      35      65 ..      22      68 .. 0.60
   2 ?    1.2   0.3      0.17   2.9e+02      17      28 ..      84      95 ..      81      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00098
    PF12575.3 40 kkensssniiiliil.iiivvivvllvflyL 69
                 + +++ + ii +ii  +++++i+v l+++y+
  MMETSP0890-20130614|23908_1 35 SGKSTVVPIIGIIIGiVVFALIMVCLIVVYI 65
                 3344445555566651567778888899997 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.17
    PF12575.3 17 ddDfeeFidvvk 28
                 d+D   Fidvv 
  MMETSP0890-20130614|23908_1 84 DNDDKIFIDVVS 95
                 89999*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       962  (0.0703628); expected 273.4 (0.02)
Passed bias filter:                      645  (0.0471767); expected 273.4 (0.02)
Passed Vit filter:                       104  (0.00760679); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 446.44
//
Query:       MMETSP0890-20130614|23921_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.32s 00:00:00.72 Elapsed: 00:00:00.74
# Mc/sec: 450.13
//
Query:       MMETSP0890-20130614|23924_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-23   82.9   0.0    1.9e-23   82.6   0.0    1.1  1  PF03641.9 Possible lysine decarboxylase


Domain annotation for each model (and alignments):
>> PF03641.9  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   1.4e-27   1.9e-23       1     130 [.      42     172 ..      42     175 .. 0.89

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 1.4e-27
                  HHHHHHHHHT----EE--EECCGHH.CC-TTCTBSS--EE..SSHHHHHHHHHHH-SEEEE-------HHHHHHHHHHCTTSGG--.-EEEE--GGHHHHHHHHHHHHHCHHHBSCTTGGCEEEESSHHHHH CS
    PF03641.9   1 meavakgaleaggrviGiipkillaaeeapneevtelviv..edmeeRkealvrladafvilPGGiGTleElleiltliqlgkhqkvPiiLlnpkgyydkllefldhlveegtisekareliivvddaeevv 130
                  m+av++g  +agg++i +i + ++    ++ e+++++++   +++  Rk++l+++ad +v+lPGGiGT++El+e+ +l+ql+ +   P+++ln+++yy+ ll+ l+++  +g +s+   ++i  ++++++++
  MMETSP0890-20130614|23924_1  42 MGAVNRGCKDAGGHIICVIHERFVV-DGVEFEYADQMIVStgPNLGDRKRLLAEHADIIVALPGGIGTFDELFEAAALSQLNFTGAKPVAILNIDNYYSGLLQQLERAHSDGLLSKLPKDIIFPATSVDDLI 172
                  9*****************9998888.777888888885532389****************************************655***************************999888888777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.86
# Mc/sec: 535.00
//
Query:       MMETSP0890-20130614|23952_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-14   51.8  11.1    8.8e-14   51.0   7.7    1.4  1  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
        7.5    6.7   6.3        1.3    9.2   0.6    2.2  2  PF02656.10 Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   7.7   1.3e-17   8.8e-14     174     314 ..      23     158 ..       2     167 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 1.3e-17
   PF02535.17 174 iaillvlglglHsfidGLAiGvsssedt...gislflAvllHelphelglgaiLlk.agasrkkavllnllfaltaplGaliGiavsaadnsgrsdlvsgillalaaGtflYvalvellpeelanekslkqnllqllglllGfal 314
                  +++ ++ g+ lH+++dG+ i+ ++  ++   g+++++A + Hel  e++++aiLl+ ag+s++ a+  n++++l+ ++Ga+i ++       +    ++g+lla+a+G+  Y a+    ++ l+ +    ++ l+ l++++ fa+
  MMETSP0890-20130614|23952_1  23 LVFSITAGDWLHNLVDGFVIAQAFLDCSvskGWTIVAATIYHELAQEISDFAILLNvAGLSVIPALGVNIFTGLSVMIGAAIYMWT------KPGVGTQGLLLAFAGGMYTYLATNVAAAQFLKTDL---KSSLSKLCVFFCFAI 158
                  3677889******************999999***********************975899**************************......999*******************9766555555444...333333333333333 PP

>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.16   1.1e+03      43      68 ..      81     106 ..      37     110 .. 0.56
   2 ?    9.2   0.6   0.00018       1.3      21      64 ..     129     167 ..     117     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.16
   PF02656.10  43 naakilglllialailtllygivryl 68 
                  +++ i++l + + + l+  +g+  y+
  MMETSP0890-20130614|23952_1  81 GLSVIPALGVNIFTGLSVMIGAAIYM 106
                  33344444444445555555555555 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00018
   PF02656.10  21 aavglallrlflldhssssasrnaakilglllialailtllygi 64 
                  +a+ +a++++ ++d +ss     ++k++++ ++a++++++++++
  MMETSP0890-20130614|23952_1 129 LATNVAAAQFLKTDLKSS-----LSKLCVFFCFAIGVIAIGLVL 167
                  677788889988888755.....***************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.84
# Mc/sec: 544.89
//
Query:       MMETSP0890-20130614|23954_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-80  267.8   0.0    4.1e-80  267.4   0.0    1.2  1  PF00926.14 3,4-dihydroxy-2-butanone 4-phosphate synthase
    6.6e-57  191.3   0.0    2.3e-56  189.5   0.0    1.8  1  PF00925.15 GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> PF00926.14  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.4   0.0     6e-84   4.1e-80       1     194 []      34     229 ..      34     229 .. 0.99

  Alignments for each domain:
  == domain 1    score: 267.4 bits;  conditional E-value: 6e-84
   PF00926.14   1 ieeaiealkaGklvivvDdedrEnegdlvvaAeavtpekvafmvrharGlicvalteeraeklgLppmvdkntsekktaftvsvdhak.gtttGIsaadRalTirkladekakaedfvrPGhvfplrakeggvlerrGhTEaavdLarlagltpaaviceildd.dgsmarleelkefakehglklitiedlieyr 194
                  +e+a+++lk+G++viv+Dd+drEnegdl++aAe +t e++afmvrh++G+ic+al+ +r+++l+L pmv++n+++k+taftvsvd +  g+ttGIsa+dRa Ti++lad+k  ++df rPGh+fplra++ggvler GhTEaavdLa lagl+pa+v+cei++d dg+mar ++l  f ++h+l ++tied+ +yr
  MMETSP0890-20130614|23954_1  34 VEAALDELKRGRPVIVTDDADRENEGDLIIAAEVATRENIAFMVRHTSGVICIALPGDRLDELQLGPMVTNNQDPKGTAFTVSVDLRGrGITTGISASDRAATIQALADPKFGPQDFCRPGHLFPLRARPGGVLERGGHTEAAVDLATLAGLKPAGVLCEIVRDtDGEMARADDLDMFRRHHNLVMTTIEDIRAYR 229
                  689**********************************************************************************8879***************************************************************************9***************************9997 PP

>> PF00925.15  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.0   3.4e-60   2.3e-56       7     169 .]     262     445 ..     258     445 .. 0.96

  Alignments for each domain:
  == domain 1    score: 189.5 bits;  conditional E-value: 3.4e-60
   PF00925.15   7 aelptefgefrlvafrdkvdgkehlalvkg.....................disedepvlVRvHsecltgDvlgslrcdcgeqLdealeriaeegrGvivyl.rqegrgiglleklraynlqdegldtveanlalglpadeRdygigaqILrdlGvrkirLltnnpekieaLegfglevvervpl 169
                   +lpt++g+f++ +f++ +dg+eh+al++                      + s+  ++lVRvHsec tgD++gs+rcdcgeqL++al++ia e  Gv++y+  +egrgigl +kl ay+lqd+gldtveanl+ glp d+R+y+++a++L+ l++++irL+tnnp k +aL++ g++++ervpl
  MMETSP0890-20130614|23954_1 262 SRLPTRYGNFKMTVFTQ-TDGTEHMALIHDsstldqqgshdttlingktvsTSSKLFTPLVRVHSECATGDIFGSRRCDCGEQLERALKKIASEPFGVLLYIrGHEGRGIGLGHKLSAYALQDQGLDTVEANLEQGLPIDARSYNAAAAMLSLLNIDNIRLMTNNPAKCNALRDLGIQISERVPL 445
                  689************98.59***************************97744467779********************************************77*******************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.49s 00:00:01.17 Elapsed: 00:00:00.74
# Mc/sec: 1609.45
//
Query:       MMETSP0890-20130614|23970_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-55  187.1  14.3    2.5e-55  187.0   9.9    1.0  1  PF01226.12 Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> PF01226.12  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   9.9   1.8e-59   2.5e-55      10     247 ..      46     287 ..      37     290 .. 0.93

  Alignments for each domain:
  == domain 1    score: 187.0 bits;  conditional E-value: 1.8e-59
                  ------HHHHHHHHHHHHHH-------HHHHHHHHT---...TTS----TTT----GGG---HHHHH-----SSTTTC.HHHHCC---......-SSHHHHHHHHHHH-------HHHHHHHHHHTGGG-------HHHHHHHTTSS--HHHHHH---HHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH---TTTSS.HHHHHHHTHHHHH-------------HHH CS
   PF01226.12  10 aagekkakksllkllllgilAGafialgallalvvasgl...aaaepglakllgglvFpvGlilvvllgaeLfTgntlllvlallekk......vslkkllrnwvivyigNlvGallvalllaasgvltaegavgealvkiaeakvslsfleaflrgilcNwlVclavwlalaakdiagkilaiwlpifafvasgfeHsvanmfliplgiflganvtlvskfilknlipvtlGNivGGavfvgllyw 247
                  + g ++ +++  +++++++l+Ga+++ g+++++++++g+    ++ pgl k l++l+Fp+Gl+ +v++ga+L+T+n+ +++l++++++       ++++l+ +w+i+ +gN++ ++ +al+  +  +    ++++++++++a++kv+ s++ +f+++i++NwlV+la++ a +ak++ gk++++wlpi++fva+g+eHsvan++++plg+++ga+  ++++ +l+nl p++ GNivG+++f+++l w
  MMETSP0890-20130614|23970_1  46 EIGLTRGERNSGQIFTSALLGGAYLSWGGAMFVLLGGGTaeaMDTMPGLHKALSALIFPIGLTSIVVTGADLLTSNMSYASLPIISGDerrtlnKKISSLIHLWTISAAGNFAASCGMALMTSHLFID---TSMATFAAALATKKVAGSTVYIFTKAIGANWLVNLAIFEAATAKSSPGKAAMLWLPITTFVALGLEHSVANFYFLPLGYLCGAD--ITYADMLHNLAPAITGNIVGASFFFSYLQW 287
                  56677788999**********************99999976666667**************************************9998888888999*********************999887554...59*********************************************************************************5..5688889*******************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.67
# Mc/sec: 1162.41
//
Query:       MMETSP0890-20130614|23976_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   39.5   0.0    4.3e-10   39.3   0.0    1.4  1  PF13489.1 Methyltransferase domain
    3.3e-09   36.9   0.0    1.5e-08   34.9   0.0    1.9  2  PF08241.7 Methyltransferase domain
    4.5e-06   26.9   0.0    1.1e-05   25.6   0.0    1.8  2  PF08242.7 Methyltransferase domain
    0.00037   20.0   0.0    0.00056   19.4   0.0    1.2  1  PF13847.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.3e-13   4.3e-10      75     117 ..     101     148 ..      29     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.3e-13
    PF13489.1  75 e.....pagkfdlivarevlehvpdpeellrqiaellkpgGylllstp 117
                  +     p++++d+i+a++vleh+++p  +l ++ ++lkpgG++++  p
  MMETSP0890-20130614|23976_1 101 NltniiPDHSYDVIYASHVLEHMQNPLGALLSWDQILKPGGLAFFILP 148
                  144455899***********************************9887 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.3e-12   1.5e-08      45      95 .]      89     145 ..      61     145 .. 0.82
   2 ?   -0.9   0.0      0.61   2.1e+03      54      73 ..     147     166 ..     146     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 4.3e-12
    PF08241.7  45 e....lvvadaeel..pfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                  +    ++ ada +l    +d s+Dv+++s+vleh+++p  al  + ++LkpgGl ++
  MMETSP0890-20130614|23976_1  89 RqmgkYIIADAANLtnIIPDHSYDVIYASHVLEHMQNPLGALLSWDQILKPGGLAFF 145
                  0455688999999976688**********************************9886 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.61
    PF08241.7  54 lpfednsfDvvvssevlehl 73 
                  lp + n+fD   ++++le l
  MMETSP0890-20130614|23976_1 147 LPWKQNTFDQFRAVNTLEQL 166
                  78999****99999999876 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.3e-09   1.1e-05      64      98 ..     102     142 ..      62     143 .. 0.80
   2 ?   -3.4   0.0       3.7   1.3e+04      66      79 ..     153     166 ..     149     174 .. 0.56

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3.3e-09
    PF08242.7  64 g......ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                         +s+Dv++as+vl+h++++  +l +  + LkpgG 
  MMETSP0890-20130614|23976_1 102 LtniipdHSYDVIYASHVLEHMQNPLGALLSWDQILKPGGL 142
                  02333448********************************6 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.7
    PF08242.7  66 sfDvvvasnvlhhl 79 
                  +fD   a n+l+ l
  MMETSP0890-20130614|23976_1 153 TFDQFRAVNTLEQL 166
                  56666666666655 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.6e-07   0.00056      58     126 ..      94     162 ..      91     193 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.6e-07
    PF13847.1  58 Fiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsk 126
                  +i++d+ +l + ++ +s+D++ +  vl+++ +p  +l +  + lkpgg  +   p+ +++  ++ +  ++
  MMETSP0890-20130614|23976_1  94 YIIADAANLTNIIPdHSYDVIYASHVLEHMQNPLGALLSWDQILKPGGLAFFILPW-KQNTFDQFRAVNT 162
                  6788888888547789****************************************.3333344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.90
# Mc/sec: 636.37
//
Query:       MMETSP0890-20130614|23979_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-22   80.2   6.1    1.9e-22   79.6   4.2    1.4  1  PF06244.7 Protein of unknown function (DUF1014)
  ------ inclusion threshold ------
       0.34   10.8   0.1       0.34   10.8   0.1    1.9  2  PF11943.3 Protein of unknown function (DUF3460)
       0.53    9.6   2.6       0.67    9.3   1.8    1.1  1  PF07565.8 Band 3 cytoplasmic domain


Domain annotation for each model (and alignments):
>> PF06244.7  Protein of unknown function (DUF1014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   4.2   4.1e-26   1.9e-22       4     121 ..      40     158 ..      20     159 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 4.1e-26
    PF06244.7   4 qieerleeekkkeekeekkkkkkanvevelednlnenirde.eeetdeArtiddaiavLsvkdeevdrhpekrlkAaykayeeenLPrlkeekpnlrlsQykqllwKefkkspdNPlNq 121
                  +  e+ e++k ++e+ ek++k k  v ++  +++ +n ++  ++e + A++id ai+vLs ++     +  k lk  y+a+e + +P lkee+p+l+ sQyk+  +  ++ksp+NP Nq
  MMETSP0890-20130614|23979_1  40 KASEEAEKRKIQQEALEKSAKAKGIVMQDHRNEISQNPNRPlDDEAETATNIDGAIEVLSGTKGLPRTQSSKNLKVLYSAFEAKTIPMLKEENPGLKQSQYKDRCFALWQKSPENPKNQ 158
                  455666677777777777777766667777788999877751666777************88877778899***********************************************9 PP

>> PF11943.3  Protein of unknown function (DUF3460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.91   4.1e+03      38      53 ..      38      53 ..      36      55 .. 0.69
   2 ?   10.8   0.1   7.5e-05      0.34      12      43 ..     126     159 ..     121     161 .] 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.91
    PF11943.3 38 dleeqarfkaarVpqk 53
                 ++++ +++++ +++q+
  MMETSP0890-20130614|23979_1 38 NKKASEEAEKRKIQQE 53
                 5667777777788776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.5e-05
    PF11943.3  12 nelkakkPeleeeqrkgRal.lWDk.pldleeqa 43 
                    lk+++P l+++q k R   lW k p ++++q+
  MMETSP0890-20130614|23979_1 126 PMLKEENPGLKQSQYKDRCFaLWQKsPENPKNQD 159
                  569***************8549**9888888775 PP

>> PF07565.8  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.8   0.00015      0.67      97     165 ..      24      99 ..       2     113 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00015
    PF07565.8  97 lgkllsekk.......kaeqselslqkslelekakeseslekveeekkkanekllrkipegaEAsvVLvGevdfLe 165
                  +gk +++++       ka++++++ + ++e+ +++++++  ++++++++ +++  r + ++aE+++ + G+++ L+
  MMETSP0890-20130614|23979_1  24 TGKAKKKNNngatankKASEEAEKRKIQQEALEKSAKAKGIVMQDHRNEISQNPNRPLDDEAETATNIDGAIEVLS 99 
                  222222222222222233333333333333444455666667899***************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1431  (0.104666); expected 273.4 (0.02)
Passed bias filter:                      702  (0.0513458); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 543.40
//
Query:       MMETSP0890-20130614|23993_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-13   51.0   0.0    1.5e-13   50.5   0.0    1.2  1  PF01593.19 Flavin containing amine oxidoreductase
    2.1e-12   46.7   0.1    4.2e-12   45.7   0.0    1.5  2  PF13450.1  NAD(P)-binding Rossmann-like domain
    2.2e-08   34.2   0.2    0.00064   19.7   0.0    1.3  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    6.5e-07   28.4   0.1      8e-07   28.1   0.1    1.1  1  PF01266.19 FAD dependent oxidoreductase
      8e-07   29.2   0.0    1.2e-06   28.6   0.0    1.3  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    2.1e-06   26.1   0.1    2.5e-06   25.8   0.0    1.1  1  PF00743.14 Flavin-binding monooxygenase-like
    1.8e-05   24.6   0.0    2.7e-05   24.0   0.0    1.3  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00012   20.6   0.1    0.00015   20.2   0.1    1.1  1  PF03486.9  HI0933-like protein
    0.00018   20.5   0.0    0.00022   20.2   0.0    1.1  1  PF01946.12 Thi4 family
    0.00071   18.6   0.1     0.0009   18.2   0.0    1.1  1  PF01494.14 FAD binding domain
    0.00074   18.3   0.1    0.00089   18.1   0.0    1.1  1  PF00890.19 FAD binding domain
     0.0038   16.0   0.0     0.0043   15.9   0.0    1.0  1  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.014   15.0   0.0    1.2  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.013   14.9   0.0      0.014   14.8   0.0    1.2  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
      0.014   14.2   0.1      0.017   13.9   0.0    1.1  1  PF05834.7  Lycopene cyclase protein
      0.015   14.2   0.1       0.02   13.8   0.0    1.1  1  PF12831.2  FAD dependent oxidoreductase
      0.053   13.1   0.0      0.071   12.7   0.0    1.2  1  PF13454.1  FAD-NAD(P)-binding
      0.057   11.9   0.0      0.064   11.7   0.0    1.0  1  PF00148.14 Nitrogenase component 1 type Oxidoreductase
      0.064   11.9   0.1      0.078   11.7   0.1    1.1  1  PF01134.17 Glucose inhibited division protein A
       0.11   12.0   0.0       0.16   11.4   0.0    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
       0.12   10.5   0.0       0.14   10.3   0.0    1.1  1  PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
       0.13   11.5   0.0       0.15   11.2   0.0    1.2  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
       0.13   11.5   0.0       0.19   11.0   0.0    1.3  1  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.5e-16   1.5e-13       1      44 [.      47      89 .]      47      89 .] 0.96

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 2.5e-16
                 ----HHHHHHHH---EEEEEESSS-------EEE---..-EEE- CS
   PF01593.19  1 laGLaAArqLlqaGfdVtvlEArdrvGGRirtfrskgdgyliel 44
                 l+GL++A++L++aG++ t++EArd +GG+++ ++++ dg +ie+
  MMETSP0890-20130614|23993_1 47 LSGLSCAKYLSDAGHEPTIYEARDVLGGKVSAWQDE-DGDWIET 89
                 7**********************************9.599**96 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.3   4.3e+03      53      66 ..      15      27 ..       8      29 .. 0.62
   2 !   45.7   0.0   7.1e-15   4.2e-12       1      42 [.      42      84 ..      42      89 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 7.3
    PF13450.1 53 hgsgyyenlrrllr 66
                 ++ ++ye+++rl +
  MMETSP0890-20130614|23993_1 15 NT-KNYEDATRLSK 27
                 44.67888887755 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 7.1e-15
    PF13450.1  1 IvGaGlsGlvaAylLakagkdvlvlekrdrlGGraasvev.dg 42
                 I+G+GlsGl++A +L++ag++ +++e+rd lGG+++ +++ dg
  MMETSP0890-20130614|23993_1 42 IIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGKVSAWQDeDG 84
                 9***********************************9998544 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.7e-06    0.0016     151     200 ..      20      70 ..       4      73 .. 0.71
   2 !   19.7   0.0   1.1e-06   0.00064       1      42 [.      41      81 ..      41      84 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.7e-06
    PF13738.1 151 keavhle.evlepedlkgkrvvVvGgghsAidallnLldlgqkltwitrsp 200
                  + a  l+ e+ +  +  +k+v+++Ggg s+ +++  L d+g + t++  ++
  MMETSP0890-20130614|23993_1  20 EDATRLSkEIASLRSQSKKKVAIIGGGLSGLSCAKYLSDAGHEPTIYEARD 70 
                  333333325566666778**********************99888776665 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.1e-06
    PF13738.1  1 lVvGAGaaGlafadnlleegatpliivDrnakpGghwlkays 42
                 +++G+G+ Gl  a +l ++g +p  i+++++  Gg+++ ++ 
  MMETSP0890-20130614|23993_1 41 AIIGGGLSGLSCAKYLSDAGHEP-TIYEARDVLGGKVSAWQD 81
                 69********************8.9************99975 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   1.3e-09     8e-07       1      36 [.      39      74 ..      39      81 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.3e-09
                 EEEEE----HHHHHHHHHHHTT-EEEEEESSSTTSS CS
   PF01266.19  1 dvviiGgGivGlstAyeLarrglkVtllekgdiasg 36
                 +v+iiGgG +Gls+A +L+ +g++ t++e++d+ +g
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGG 74
                 59*****************************77665 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     2e-09   1.2e-06       1      35 [.      39      73 ..      39      82 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2e-09
                 EEEEE---HHHHHHHHHHHHTTSEEEEEESSSSSS CS
   PF00070.22  1 rvvvvGGGyiGlElAaalaklgkkVtvierrdrll 35
                 +v+++GGG++Gl +A +l++ g++ t+ e+rd l 
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLG 73
                 79*****************************9886 PP

>> PF00743.14  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.2e-09   2.5e-06       1      39 [.      37      75 ..      37      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.2e-09
   PF00743.14  1 akkvaviGaGvsGlasikccleegleptcfersddiGGl 39
                 +kkva+iG+G+sGl+  k   + g ept +e  d +GG 
  MMETSP0890-20130614|23993_1 37 KKKVAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGK 75
                 69***********************************95 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.5e-08   2.7e-05       1      32 [.      39      70 ..      39      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.5e-08
                 SEEEE----HHHHHHHHHHHTTSEEEEECSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9  1 dvviiGgGpaGlsaakdlaqkglkvaliekeg 32
                 +v+iiGgG  Gls+ak+l ++g++ +++e+ +
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEARD 70
                 69**************************7654 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.6e-07   0.00015       2      39 ..      39      76 ..      38      78 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.6e-07
    PF03486.9  2 dviviGgGaAGlmaAisaakrgakVllldkakklgrKi 39
                 +v++iGgG +Gl +A  ++++g++ +++++ + lg K+
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGKV 76
                 89*********************************998 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.7e-07   0.00022      10      55 ..      30      75 ..      23      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.7e-07
                 HHHHHHTEEEEEEE-------HHHHHHHTSTS-EEEEESSS----- CS
   PF01946.12 10 edllkyaesDvvivGaGssGltaayylakkdlkvailerklsiGGG 55
                   l +  ++ v+i+G+G sGl++a+yl+ ++   +i e++  +GG 
  MMETSP0890-20130614|23993_1 30 ASLRSQSKKKVAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGK 75
                 5566777889*****************************9999985 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.5e-06    0.0009       3      32 ..      39      68 ..      37      74 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.5e-06
                 CEEE--------HHHHHHHHH.HHEEEEES CS
   PF01494.14  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                 +V+I+G+G++Gl+ a+ Ls aG + ++ e 
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEA 68
                 79********************98887665 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-06   0.00089       2      40 ..      40      79 ..      39      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-06
                 EEEE-------HHHHHHHCHTT-EEEE-SS-CCGS.GGGG CS
   PF00890.19  2 vvViGsGlAGlaAAleaaeaglkvavvekeqetgg.ataw 40
                 v +iG+Gl+Gl++A  +++ag++ ++ e+ ++ gg  +aw
  MMETSP0890-20130614|23993_1 40 VAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGkVSAW 79
                 89*********************99999999999955655 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-06    0.0043     162     215 ..      10      62 ..       4      70 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.2e-06
    PF13434.1 162 PealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqka 215
                  P+ ++++++ e+ +  s+ + +  ++++kk++a++G+G S+   ++ l +  ++
  MMETSP0890-20130614|23993_1  10 PSRIENTKNYEDATRLSKEIASL-RSQSKKKVAIIGGGLSGLSCAKYLSDAGHE 62 
                  77777777778888877777777.699**************9999888877665 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.3e-05     0.014       1      31 [.      39      69 ..      39      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.3e-05
                 EEEEE-------HHHHHHHTTEEEEEEE-S- CS
   PF01210.18  1 kvavlGaGswGtalAkvlaenghevrlWvre 31
                 kva++G+G  G + Ak+l++ ghe +++  +
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEAR 69
                 89********************999998766 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.4e-05     0.014      16      55 ..      33      72 ..      19      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.4e-05
                 --B---EEEEE-------HHHHHHHH---EEEE--SSTTH CS
   PF01262.16 16 ggvkpakvvviGaGvvGlgAievakglgaevvaldkrper 55
                 ++ +  kv +iG+G  Gl+ ++  +  g+e ++++ r+  
  MMETSP0890-20130614|23993_1 33 RSQSKKKVAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVL 72
                 567889****************************999865 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.9e-05     0.017       2      50 ..      40      85 ..      39      88 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.9e-05
    PF05834.7  2 lvivGaGlAglllAlrlreakpglrvllidagpkllfgnny.tWsfeeed 50
                 ++i+G+Gl+gl++A  l++a  +  +   +a++ l  g++   W++e+ d
  MMETSP0890-20130614|23993_1 40 VAIIGGGLSGLSCAKYLSDAGHEPTI--YEARDVL--GGKVsAWQDEDGD 85
                 79***************777666655..4556655..5555599999876 PP

>> PF12831.2  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-05      0.02       2      40 ..      40      78 ..      39      80 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.3e-05
    PF12831.2  2 vvVvGGgpaGvaAAiaAarlGakvlLverrgvlGGmlts 40
                 v+++GGg++G+ +A   + +G + ++ e r+vlGG +++
  MMETSP0890-20130614|23993_1 40 VAIIGGGLSGLSCAKYLSDAGHEPTIYEARDVLGGKVSA 78
                 89*********************************9875 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.071       1      33 [.      41      68 ..      41      87 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00012
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitvfdp 33
                 aIiG+G +Gls+++ L         +e t+++ 
  MMETSP0890-20130614|23993_1 41 AIIGGGLSGLSCAKYLSDAG-----HEPTIYEA 68
                 8**************99884.....33344555 PP

>> PF00148.14  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011     0.064     252     298 ..      18      64 ..       5      71 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   PF00148.14 252 aeer.arlldaladyhkylagkrvavygggdlavalarllkelGmevv 298
                  + e   rl +++a ++++ + k+va++ggg   ++ a+ l + G e+ 
  MMETSP0890-20130614|23993_1  18 NYEDaTRLSKEIASLRSQSK-KKVAIIGGGLSGLSCAKYLSDAGHEPT 64 
                  44554778888888887777.***********************9997 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00013     0.078       1      28 [.      39      66 ..      39      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
                 SEEEE-------HHHHHHHH----EEEE CS
   PF01134.17  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                 +v +iGgG++G+ +A  ++ +G++ +++
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIY 66
                 699******************9987666 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.16       1      31 [.      39      69 ..      39      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00027
                 EEEEE---------HHHHHCT.SEEEEE-S- CS
   PF02737.13  1 kvaVvGaGtmGagiAavfaragleVvlvdis 31
                 kva++G G+ G + A+ + +ag+e ++++ +
  MMETSP0890-20130614|23993_1 39 KVAIIGGGLSGLSCAKYLSDAGHEPTIYEAR 69
                 79**********************9999875 PP

>> PF06100.6  Streptococcal 67 kDa myosin-cross-reactive antigen like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024      0.14       2      49 ..      37      80 ..      36      88 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00024
    PF06100.6  2 nksayliGsGlaalaaavflirdgqmdGekihileeldlaGGsldGae 49
                 +k++ +iG+Gl++l++a +l      +G++ +i e  d+ GG +   +
  MMETSP0890-20130614|23993_1 37 KKKVAIIGGGLSGLSCAKYLSD----AGHEPTIYEARDVLGGKVSAWQ 80
                 68999**************954....4778899999999999876655 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.15       4      31 ..      37      64 ..      34      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
                 ---EEEE-------HHHHHHHH----EE CS
    PF07991.7  4 ekkiaviGyGsqGhaqalnlrdsgldvv 31
                 +kk+a+iG G  G + a+ l d g + +
  MMETSP0890-20130614|23993_1 37 KKKVAIIGGGLSGLSCAKYLSDAGHEPT 64
                 79*********************98755 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00031      0.19       1      30 [.      38      67 ..      38      88 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00031
                 -EEEEE------------TTT---EEE--- CS
    PF03721.9  1 mkiaviGlGYvGlptavvlaekghevvgvD 30
                 +k+a+iG G  Gl++a  l+  ghe ++ +
  MMETSP0890-20130614|23993_1 38 KKVAIIGGGLSGLSCAKYLSDAGHEPTIYE 67
                 59**********************988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.84
# Mc/sec: 253.90
//
Query:       MMETSP0890-20130614|24004_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.6   0.1    2.4e-16   59.6   0.1    1.6  1  PF00072.19 Response regulator receiver domain
    9.7e-15   54.1   0.0    1.8e-14   53.2   0.0    1.5  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    6.4e-05   22.7   0.6    0.00013   21.7   0.1    1.8  2  PF00512.20 His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   5.3e-20   2.4e-16       1     110 [.     459     568 ..     459     570 .. 0.94

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 5.3e-20
                  EEEESSSHHHHHHHHHHHHHTTSEEEEEESSSHHHHHHHHHHHESEEEEESS-TT----HHHHHHHHHT.....TTSEEEEEES-TTHHHHHHHHHTT-SEEEESS--HHHHHHH CS
   PF00072.19   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireee.....pklpiivvtahgeeedalealkaGakdflsKpfdpeelvka 110
                  vl+v+D  ++r+l+  +l++ ++ +v+ea dgee le + e+d+ lil Di+mp++dG  +++++r+       +++ +i++ta+ +    +  l+ + + +l+Kp+  ++l + 
  MMETSP0890-20130614|24004_1 459 VLVVEDTATIRSLMVAILRRYDL-HVTEAVDGEEGLEAASENDYALILSDINMPRLDGWSMCRQLRKIWssqnrKHPLVIACTASID----ISSLDTDFDAVLAKPVTSKDLKAL 568
                  89*********************.*****************************************9988887878899******999....788999999999999999998875 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0     4e-18   1.8e-14       2     110 ..     306     419 ..     305     420 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 4e-18
                  HHHHHHHHHHHHHHHHHHHHHHH...SEEEEEEEEECTCEEEEEEE-----THHHHHHHCSTTTCCSC..SSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEEEEEEC CS
   PF02518.21   2 dedrlrqivselvdNavkatees...geievrvkreegelvieVeDnGiGipeedlervfepffqtdd..dsrkvggtGlGlsivkklvellggeieveskeggGttvtlrlpl 110
                  d+d l q + +l +Na k+t ++    + ++  k+++ +l++ V D+G+G+pe+  + +f +   + +  ++  v  tG+Gls v  +++++gg+  +++++++G+ +++ lp 
  MMETSP0890-20130614|24004_1 306 DQDWLLQNIVNLFTNAAKHTLTGyiqCSFKIIHKNQSRHLQVIVDDTGQGVPENRRNALFVQCSPSLNptETTIVRSTGIGLSGVAMRLQMIGGNYGYTPRQPNGSSFWFDLPI 419
                  889999****************887777778888888****************888888776655555766777777**********************************995 PP

>> PF00512.20  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   2.9e-08   0.00013       3      63 ..     198     256 ..     196     260 .. 0.82
   2 ?   -3.8   0.0       2.7   1.2e+04      47      58 ..     340     351 ..     337     352 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.9e-08
   PF00512.20   3 grflagvsHELrtPLtailgnaellervgelteeelrealeiirdeaerlraliedlLdls 63 
                    ++a  +H+ +tPLt+ +++++ll+   e  +e+ +++l+++  ++e lr  + + L+ +
  MMETSP0890-20130614|24004_1 198 VAMMAAFAHDVKTPLTTFQLALDLLKS--EVHSEQGEKLLRKAYGSSEVLRLTVLQALEVA 256
                  568999*********************..555555599****9999999988877777666 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.7
   PF00512.20  47 deaerlralied 58 
                  +++++l+ +++d
  MMETSP0890-20130614|24004_1 340 NQSRHLQVIVDD 351
                  578889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.92
# Mc/sec: 1518.56
//
Query:       MMETSP0890-20130614|24014_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-59  200.4   0.0    1.6e-59  200.2   0.0    1.0  1  PF00227.21 Proteasome subunit
    6.7e-06   25.1   0.4    1.9e-05   23.7   0.0    1.9  2  PF10584.4  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
       0.18   11.9   0.3       0.46   10.6   0.0    1.7  2  PF10808.3  Protein of unknown function (DUF2542)


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.0   3.5e-63   1.6e-59       1     190 []      18     202 ..      18     202 .. 0.98

  Alignments for each domain:
  == domain 1    score: 200.2 bits;  conditional E-value: 3.5e-63
                  HHC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEEEE CS
   PF00227.21   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvevavi 190
                  v+ G t++Gik+k+gvvl++d+++   skl+++s v+K+ k++d +g++++G  +D r+lv++ar+ aq+y l+y++  +v+ lv+ laa++q+ytq++g+rpfgvsll+ag+d+eg pqlyq+dpsG+++++ +a aiG++ + a+++lek+y++d +l++a+++a+  ++e +e++ +++ n+e+avi
  MMETSP0890-20130614|24014_1  18 VSEGKTSLGIKAKNGVVLCTDMKVG--SKLVDRSGVKKLEKLTDSCGLVYSGIGPDYRVLVKKARKSAQQYFLTYNEAKPVRGLVQDLAAVMQEYTQSGGVRPFGVSLLVAGMDDEG-PQLYQVDPSGAYYGW-QASAIGKNFKNARSFLEKRYNDDVELDDAIHTALLTMREGFEGE-MNEHNIELAVI 202
                  578******************9999..***************************************************************************************777.***************.6*****************************************66.*********97 PP

>> PF10584.4  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.2e-09   1.9e-05       8      23 .]       2      17 ..       1      17 [. 0.96
   2 ?   -1.3   0.1      0.28   1.3e+03      14      18 ..     135     139 ..     134     139 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.2e-09
                 -------HHHHHHHHH CS
    PF10584.4  8 FSPdGRLfQVEYAlkA 23
                 FS  G+L+Q+EYAl+A
  MMETSP0890-20130614|24014_1  2 FSRSGKLLQIEYALTA 17
                 9*************98 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.28
                  -HHHH CS
    PF10584.4  14 LfQVE 18 
                  L+QV+
  MMETSP0890-20130614|24014_1 135 LYQVD 139
                  9***6 PP

>> PF10808.3  Protein of unknown function (DUF2542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.2     1e+04      33      51 ..      77      95 ..      75      97 .. 0.56
   2 ?   10.6   0.0    0.0001      0.46      23      41 ..     143     161 ..     140     170 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.2
    PF10808.3 33 dkvvknarepvyvyraedp 51
                  k  k a++    y +++p
  MMETSP0890-20130614|24014_1 77 KKARKSAQQYFLTYNEAKP 95
                 4555555555666666666 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
    PF10808.3  23 aykGwraGavdkvvknare 41 
                  ay Gw+a a+ k  knar 
  MMETSP0890-20130614|24014_1 143 AYYGWQASAIGKNFKNARS 161
                  9****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.61
# Mc/sec: 879.97
//
Query:       MMETSP0890-20130614|24022_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-26   91.7   0.3    5.4e-26   91.3   0.2    1.1  1  PF00884.18 Sulfatase


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.2     4e-30   5.4e-26     100     332 ..       4     261 ..       2     333 .. 0.82

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 4e-30
                  ----TCGGGHHCCCHH----C.CC-....CCCCGGGCSC-EEETTTE...S.GGGSHHHHHHHHHHHHH..HHCTTSSEEEEEE--TTSSS----TTTTTSS-GGGS.....................................HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGGHHH-TT----HHHHHHCCBEEEEEEE----TT.EE-S-EEGGGHHHHHHHH---.....--TTST-----THHHH---- CS
   PF00884.18 100 gkwhlgwlsrqsvyknrGFdr.flgfptgednlknpedveynnsvlr...ppeggysdealldealefl..larndkPfflylatlgpHappyapdeyaekyatffddgeeka...............................rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgasleegngplrggkgvnayeggtrvPllvwwpggkaprvseelvshvDlaptildlagilpkvegpkdrlldgksllptlegka 332
                  gk+ +g+  +++ ++n    +  +g++ +++ + + ++++ +n +++    p+  y +++l++   +++  + r++  ff+ + +++pH+p++ p +y +  ++        +                               + ++++++++  vDd++g++l+++ ++ l+ +T+++ftSD+g++l  g ++l +gk+    ++++r Pl+v++pg+ +   + +l+ + Dl+pt++d  +i    +  +    dgks++++l + +
  MMETSP0890-20130614|24022_1   4 GKYMNGYHAQTN-APNNYSTYiPVGWSDWYALQSMDYFGPRFNINGQsvlFPDDVYQTDVLAEISSTWIgsKIRHNSSFFALITPHAPHDPYTPPLRYSGILEGLVTI----PqdssfnqddyhqqllpgifadlptqnssemiQIATRRAECLLAVDDLVGSILDTIGDDRLDIDTFFFFTSDNGYHL--GHHRLPPGKR-EIFDHDIRLPLIVAGPGITRG-LRTQLIANYDLTPTWADISNIS---APSGAPDPDGKSFASVLYNIN 261
                  667777665555.577666677788888888888877777776555599999999***************99999***************999999999975554432....0233577788888999999999999****************************************************..88********.*********************.*********************3...334566689999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.71
# Mc/sec: 1218.43
//
Query:       MMETSP0890-20130614|24049_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00033   20.5   0.0     0.0017   18.2   0.0    2.2  2  PF00575.18 S1 RNA binding domain


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.17   2.4e+03      48      60 ..      35      47 ..      23      49 .. 0.72
   2 !   18.2   0.0   1.3e-07    0.0017       2      72 ..     135     197 ..     134     199 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.17
                 CEETT----EEEE CS
   PF00575.18 48 vlkvgdevevkvl 60
                  l+vgd v + ++
  MMETSP0890-20130614|24049_1 35 SLRVGDQVNATII 47
                 5678888877776 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.3e-07
                  SSTT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEE CS
   PF00575.18   2 pekGevvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLs 72 
                  +++G+v  +t+  + ++ + Vd g g + ++ +   +       +  ++vgd++ v+v+++  +++r++L+
  MMETSP0890-20130614|24049_1 135 LQPGAVRMATIIEIFPNYFKVDAG-GLTSLVSRRLGA-------DLLYSVGDTIAVRVVQLCQKTGRAQLE 197
                  689*********************.*********999.......58**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:01.47
# Mc/sec: 347.23
//
Query:       MMETSP0890-20130614|24050_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.67
# Mc/sec: 822.63
//
Query:       MMETSP0890-20130614|24062_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.1   4.6      0.013   14.9   3.2    1.1  1  PF05764.8  YL1 nuclear protein
       0.17   11.1   4.6       0.22   10.7   3.2    1.1  1  PF03839.11 Translocation protein Sec62
       0.36    9.8   4.3       0.48    9.4   3.0    1.1  1  PF12745.2  Anticodon binding domain of tRNAs
        2.7    6.7   5.4        4.1    6.1   3.8    1.3  1  PF04929.7  Herpes DNA replication accessory factor


Domain annotation for each model (and alignments):
>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.2   3.9e-06     0.013      24     111 ..      15      94 ..       5     135 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.9e-06
    PF05764.8  24 edevqkttsaldenllfeEeedDeefeeeeeeeeeeeDsdfddseddeeesddeeegekelekeekekkkkrkkkkaykeplkkkkkk 111
                  +de        d+   f E+++ e   +e+e+ +ee+ +d+ ++e+  ++   eee+e     +ek+kkkk+kkk++   pl + +++
  MMETSP0890-20130614|24062_1  15 KDET-------DNSQYFTENDQIESPPNENEDYQEEVKEDLQQDEE-IPAPPIEEEEETVVPVDEKKKKKKKKKKRLVSGPLFAGPRR 94 
                  2222.......22445777777777777777777777999999988.88888888888878877887888878998888887755544 PP

>> PF03839.11  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.2   6.5e-05      0.22      15      84 ..       8      84 ..       4      97 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.5e-05
   PF03839.11 15 aledekykkekdkkkaeia.etkkskkeeskekkkeka....keekkdteaeevdke..lkkeekkeekkkkkkkkv 84
                 + e+e++k+e d+ +   + ++++s+ +e+++ ++e+     ++e++    +e+++e  ++ +ekk++kkkkkk+ v
  MMETSP0890-20130614|24062_1  8 FHESENIKDETDNSQYFTEnDQIESPPNENEDYQEEVKedlqQDEEIPAPPIEEEEEtvVPVDEKKKKKKKKKKRLV 84
                 55666666666665543332344444444444444443000034444455566666566899999999999988876 PP

>> PF12745.2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.0   0.00014      0.48     104     174 ..      15      83 ..       5      87 .. 0.45

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00014
    PF12745.2 104 reredqkreesasstkelaesskkeaaasssesseeselteslas.veerqkevvvlnaatrskksnkrekv 174
                  +++   ++++  +++ +++++ +++++ ++ e +e+ +++e++ +   e+++e vv++++++ kk++k++++
  MMETSP0890-20130614|24062_1  15 KDET--DNSQYFTENDQIESPPNENEDYQE-EVKEDLQQDEEIPApPIEEEEETVVPVDEKKKKKKKKKKRL 83 
                  2222..222222223333333333333333.22333333333333033467788889988888877776654 PP

>> PF04929.7  Herpes DNA replication accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.8    0.0012       4.1     306     380 ..      18      88 ..       3      89 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0012
    PF04929.7 306 vsdklreksedsspspPktsesdleeeteeeaslsakpsaalerplasslkrkreaekkkkkkksKklklafnpl 380
                  + ++   +++d+ +spP+ ++   e+ +ee +++ +++++ ++ p++++++     ++kkkkkk+Kk++l + pl
  MMETSP0890-20130614|24062_1  18 TDNSQYFTENDQIESPPN-EN---EDYQEEVKEDLQQDEEIPAPPIEEEEETVVPVDEKKKKKKKKKKRLVSGPL 88 
                  333333456777888882.22...222333333333333333333334444455666666666777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1040  (0.0760679); expected 273.4 (0.02)
Passed bias filter:                      557  (0.0407402); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.59
# Mc/sec: 605.18
//
Query:       MMETSP0890-20130614|24067_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 272.31
//
Query:       MMETSP0890-20130614|24064_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-08   34.0   2.0    7.4e-05   22.3   0.1    3.6  3  PF00400.27 WD domain, G-beta repeat
     0.0066   14.5   0.1       0.01   13.9   0.1    1.2  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.031   2.1e+02       7      32 ..      22      46 ..      17      51 .. 0.71
   2 !   22.3   0.1   1.1e-08   7.4e-05       8      39 .]      65      96 ..      60      96 .. 0.94
   3 !    7.2   0.0   0.00063       4.3      15      39 .]     113     138 ..     107     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.031
                 EESSSSSEEEEEEESSSTEEEEEETT CS
   PF00400.27  7 lrgHtspVtcvafspdgpllasgSrD 32
                 l gHts++       +  +la++ r+
  MMETSP0890-20130614|24064_1 22 LLGHTSSILTAVRVCN-GILATCDRN 46
                 6799999987776666.688887775 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.1e-08
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39
                  gH ++ + + f    ++l++++ Dgt++lW+
  MMETSP0890-20130614|24064_1 65 LGHDAFLSRCVFVNGNTRLVTCGGDGTLKLWN 96
                 59*****************************7 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00063
                  EEEEEESSSTEEEEEE.TTSEEEEEE CS
   PF00400.27  15 tcvafspdgpllasgS.rDgtirlWd 39 
                  tc+++spd +++a +  + + irl+d
  MMETSP0890-20130614|24064_1 113 TCLDISPDNSRIAVAAeASSMIRLFD 138
                  9************9997777777776 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.5e-06      0.01     224     286 ..      73     137 ..      70     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-06
    PF11715.3 224 sssevegqtfvftlsrDgkLRvWnletgqclrttdil..eaaellpadslsyipepsesslirvi 286
                  +++ v+g+t ++t   Dg+L++Wn+++g+ l+++  +   +  +   d++  + +  +ss+ir++
  MMETSP0890-20130614|24064_1  73 RCVFVNGNTRLVTCGGDGTLKLWNTTDGSELASVNCSqvLTCLDISPDNSRIAVAAEASSMIRLF 137
                  6889**************************88888876645556666777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.78
# Mc/sec: 915.53
//
Query:       MMETSP0890-20130614|24085_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-22   78.4   4.3    5.6e-12   45.7   0.0    3.1  3  PF07603.6  Protein of unknown function (DUF1566)
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.19   10.9   0.0    1.3  1  PF14283.1  Domain of unknown function (DUF4366)
        0.4    9.7   2.2       0.62    9.0   1.5    1.2  1  PF02404.10 Stem cell factor


Domain annotation for each model (and alignments):
>> PF07603.6  Protein of unknown function (DUF1566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.3   1.3e-11     6e-08       1      68 []      53     103 ..      40     103 .. 0.79
   2 !   45.7   0.0   1.2e-15   5.6e-12       1      68 []     202     253 ..     202     253 .. 0.97
   3 ?   -3.7   0.0         3   1.4e+04      26      30 ..     444     450 ..     436     467 .. 0.46

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.3e-11
    PF07603.6   1 VtDnatgLiWercsegqtwnggsdgcsgatslnwqdalayvnqlnanglagktdWRLPtikELesLvd 68 
                  VtD +tgL+W+   +                 ++++ l+ +++l   ++ag++dWR+Pti EL +L++
  MMETSP0890-20130614|24085_1  53 VTDLVTGLTWTSTIQTV--------------DSLSEGLSAASSL---TTAGQNDWRVPTIYELYTLIN 103
                  67777777777766622..............3456677777777...*******************96 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 1.2e-15
    PF07603.6   1 VtDnatgLiWercsegqtwnggsdgcsgatslnwqdalayvnqlnanglagktdWRLPtikELesLvd 68 
                  ++D++tgL+W++  +g+              l+w +al+y+n+l   +l+g++d RLP+ kEL+s+vd
  MMETSP0890-20130614|24085_1 202 IEDSTTGLQWQKGDSGEG-------------LDWPSALKYCNNL---ELGGFSDFRLPNAKELQSIVD 253
                  78*************998.............9************...*******************97 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3
    PF07603.6  26 csg..at 30 
                  c++  ++
  MMETSP0890-20130614|24085_1 444 CTDcgSS 450
                  3332211 PP

>> PF14283.1  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.2e-05      0.19     151     193 ..     442     496 ..     394     511 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.2e-05
    PF14283.1 151 e..........eepekksglgvlllvlvval..agGGaayYfKfikpkqaekeae 193
                  +          +  +++++++ +++v vva+  +g+G++++f+ +k  + +  + 
  MMETSP0890-20130614|24085_1 442 TdctdcgsssnSSSNNSNDVALIAVVSVVAVlcVGAGIMCFFRKMKLSHTQPSSS 496
                  1223333333255566677777777777775337889999999888877776543 PP

>> PF02404.10  Stem cell factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.5   0.00014      0.62     166     256 ..     405     504 ..     393     508 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00014
   PF02404.10 166 ssvltpek....dsrvavtktislppvaasslrndssssnkkaldsiedsslqgiaialtallslligfilga...lywkkkqp..sltrsvetiqinee 256
                  s++ tp      d   +++ t + pp+ ++s   +s +   +  +s ++ss +   +al a++s++  + +ga    +++k +   +++ s +ti   e+
  MMETSP0890-20130614|24085_1 405 STTATPVStnspDISTTLAPTSASPPIISTSTPTNSHTDCTDCGSSSNSSSNNSNDVALIAVVSVVAVLCVGAgimCFFRKMKLshTQPSSSKTIATTED 504
                  5566664311113344445567789***9999999999999999999999**************999998886544466776661344455555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:01.47
# Mc/sec: 837.91
//
Query:       MMETSP0890-20130614|24089_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-30  103.6   6.0    6.5e-30  103.6   4.1    2.3  2  PF04153.13 NOT2 / NOT3 / NOT5 family
  ------ inclusion threshold ------
       0.47   10.4   2.4        1.3    9.0   1.7    1.7  1  PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF04153.13  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.0     0.073     5e+02       4      38 ..     328     362 ..     325     380 .. 0.46
   2 !  103.6   4.1   9.5e-34   6.5e-30       1     120 [.     417     530 ..     417     536 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.073
   PF04153.13   4 slasppqesdaaerereykipesyketpssfpqep 38 
                   + s p+ ++ +e++++ +   ++++t +++++ +
  MMETSP0890-20130614|24089_1 328 RFLSSPHAENDSEKQQQHNYRTNENNTVNQQQNDA 362
                  55555555533355555553344443333222222 PP

  == domain 2    score: 103.6 bits;  conditional E-value: 9.5e-34
   PF04153.13   1 leaslasppqesdaaerereykipesyketpssfpqepqplllsseekfekldeetLFyiFYympgdlqqllAakeLkkrgWryhkklqtWftreeepkeit.....deyergsYkyFdpekWkk 120
                  l++++asp++++++ +re+++++p +y+       q p+pl   +++ + k++ etLFy+FY mp+d++q +Aa+eL++r+W yh++l++Wf+r +++k+       ++ ++g+Y+yFd ++W  
  MMETSP0890-20130614|24089_1 417 LYSTFASPWSQEPT-RREPQFSLPACYY------MQ-PPPL---KTSHLAKFQLETLFYVFYAMPKDVLQAYAAQELYNREWQYHQDLKLWFKRGTDQKQGGqdnanSDNKNGQYIYFDIQSWDC 530
                  6799*****99777.9***********8......44.4477...899***********************************************777766555555577789***********75 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.7   0.00019       1.3      24      72 ..     337     388 ..     333     391 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00019
    PF06024.7  24 nd..dedennkaenkkntksaapknditeeesk..aekaqatnillisllavl 72 
                  nd  +++++n  +n++nt +++ +nd+++++++  +++aq t+  l++ll v+
  MMETSP0890-20130614|24089_1 337 NDseKQQQHNYRTNENNTVNQQ-QNDADKNSNStaTTQAQRTKYGLMGLLDVI 388
                  5532223333333333333333.3333332222468899999*******9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       906  (0.0662668); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.39s 00:00:01.39 Elapsed: 00:00:00.99
# Mc/sec: 1432.97
//
Query:       MMETSP0890-20130614|24119_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   44.3   0.0    2.5e-11   43.2   0.0    1.6  1  PF08417.7  Pheophorbide a oxygenase
    1.4e-09   37.2   0.8    2.9e-09   36.2   0.6    1.5  1  PF00355.21 Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF08417.7  Pheophorbide a oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   3.6e-15   2.5e-11       1      86 [.     179     277 ..     179     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 3.6e-15
    PF08417.7   1 FeaPclllstkeiekkkekkkelllvvlciPvapGksRllvrfplnf..............skallklvPrwwehiaankvldeDlillhgqerilqekg 86 
                  Fe+Pcl++    + ++   ++ l++ ++c+P++pG+ R l+++ l+               + ++  ++P w+ hia++ vl++D  ll +q r l  k+
  MMETSP0890-20130614|24119_1 179 FEPPCLVTFR-PNYNAMPFGNSLTISTYCVPTKPGWVRPLATVLLDTkerslqntlaeralAIFMSPITPHWFAHIASSFVLHQDAALLYYQYRTLRYKQ 277
                  9*******99.67777788899****************9999999999999999***999777888899*************************998763 PP

>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.6   4.2e-13   2.9e-09      38      86 ..       2      47 ..       1      62 [. 0.83

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 4.2e-13
                 EEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS CS
   PF00355.21 38 alnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatk 86
                 ++++ C+Hr  plseg  +++ +g+l C +H w +d + g++v+ p  +
  MMETSP0890-20130614|24119_1  2 VFEDACPHRLGPLSEG--VVQTDGTLLCSYHAWGFDGS-GSCVHLPYSD 47
                 799*************..5556678***********99.*******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.23s 00:00:00.95 Elapsed: 00:00:00.94
# Mc/sec: 1022.28
//
Query:       MMETSP0890-20130614|24129_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    8.6   5.2       0.43   10.5   1.2    1.8  2  PF06341.6 Protein of unknown function (DUF1056)


Domain annotation for each model (and alignments):
>> PF06341.6  Protein of unknown function (DUF1056)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   3.1e-05      0.43      37      57 ..      12      32 ..       3      36 .. 0.86
   2 ?    0.2   0.4     0.051     7e+02      48      50 ..      37      39 ..      30      51 .] 0.38

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.1e-05
    PF06341.6 37 aggitlsvtlillGllsevis 57
                  + ++lsv+ +l+G+l+ev+s
  MMETSP0890-20130614|24129_1 12 YATVALSVVEVLVGVLAEVVS 32
                 67899***************8 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.051
    PF06341.6 48 llG 50
                 l+ 
  MMETSP0890-20130614|24129_1 37 LVA 39
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.29s 00:00:00.62 Elapsed: 00:00:00.60
# Mc/sec: 203.69
//
Query:       MMETSP0890-20130614|24134_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-18   66.1   0.5    3.1e-18   65.6   0.4    1.2  1  PF01127.17 Succinate dehydrogenase/Fumarate reductase transmembrane subunit


Domain annotation for each model (and alignments):
>> PF01127.17  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.4   2.2e-22   3.1e-18       2     117 ..      62     175 ..      61     180 .. 0.74

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 2.2e-22
   PF01127.17   2 rknrplsphlqlyraplgawlsilhritGvallvlllhlllwlllllslgspesfeavvalfss..piklilllllllallyHalnGlrhllwD.v.glgl.elksarkkallvlalavil 117
                  + nrp+sph++ y +p+ a++si++ritGv l+v++  +       +sl++++   +v+  +++  ++  ++ + ++++l+yH+l  lrhl+wD +   +l ++++a +++++++a+++++
  MMETSP0890-20130614|24134_1  62 KLNRPVSPHVTQYAFPIVALSSITQRITGVMLTVGMSGIA-----GASLAGADVPGMVT-VLGNvpLLSPLIKFSIAWPLSYHWLGALRHLVWDkMpEATLyNDQAA-QSSYAMIAASILA 175
                  579*******************************444444.....34556666555553.4445565555666*********************8878888565666.5555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 811.40
//
Query:       MMETSP0890-20130614|24136_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.66
# Mc/sec: 2116.78
//
Query:       MMETSP0890-20130614|24145_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-31  108.0   0.7      5e-14   51.4   0.1    3.1  3  PF13475.1  Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.062   12.6   1.0        7.1    6.0   0.0    3.3  3  PF02920.10 DNA binding domain of tn916 integrase


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-06      0.01      29      49 .]       2      22 ..       1      22 [. 0.84
   2 !   51.4   0.1   7.3e-18     5e-14       2      49 .]      23      70 ..      22      70 .. 0.97
   3 !   39.2   0.0   4.5e-14     3e-10       1      39 [.      72     110 ..      72     111 .] 0.95

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.5e-06
    PF13475.1 29 ivlkAvkqngsalsyaseeLr 49
                 +vlkAv qng al+ya+ eL+
  MMETSP0890-20130614|24145_1  2 VVLKAVAQNGRALEYADAELK 22
                 689999999999999988886 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 7.3e-18
    PF13475.1  2 rEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49
                 ++ivlea+ +n+ al+y++ eLk+Dke++lkAv qngsal++a+ eL+
  MMETSP0890-20130614|24145_1 23 KDIVLEALLRNSDALYYADAELKKDKEFALKAVAQNGSALYHADAELK 70
                 8******************************************99997 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 4.5e-14
    PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngs 39 
                  D+ +vl+av + gsal+y++ +Lk+Dke+vlkA+++++s
  MMETSP0890-20130614|24145_1  72 DKGFVLKAVAQKGSALRYADASLKKDKEVVLKAINNDKS 110
                  788********************************9987 PP

>> PF02920.10  DNA binding domain of tn916 integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.015     1e+02      50      67 .]       6      23 ..       3      23 .. 0.84
   2 ?    0.6   0.0     0.048   3.3e+02      50      67 .]      29      46 ..      27      46 .. 0.86
   3 ?    6.0   0.0     0.001       7.1       4      30 ..      70      96 ..      67     101 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.015
                 --------HHHHHHHHHT CS
   PF02920.10 50 agkreciaLRekekEiqk 67
                 a  ++ +aL + ++E++k
  MMETSP0890-20130614|24145_1  6 AVAQNGRALEYADAELKK 23
                 5568899********987 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.048
                 --------HHHHHHHHHT CS
   PF02920.10 50 agkreciaLRekekEiqk 67
                 a +r+  aL + ++E++k
  MMETSP0890-20130614|24145_1 29 ALLRNSDALYYADAELKK 46
                 6678899********997 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.001
                 B-----B-----EE-----EEEEEE-- CS
   PF02920.10  4 rkekervlrkgeeqrkdlRylkkyvde 30
                 +k+k+ vl+++ +++ +lRy+   + +
  MMETSP0890-20130614|24145_1 70 KKDKGFVLKAVAQKGSALRYADASLKK 96
                 78999999***********98766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 458.61
//
Query:       MMETSP0890-20130614|24146_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.2   1.1       0.19   11.2   0.7    1.1  1  PF14423.1 Immunity protein Imm5


Domain annotation for each model (and alignments):
>> PF14423.1  Immunity protein Imm5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   1.4e-05      0.19      83     137 ..      25      76 ..      13      79 .] 0.66

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
    PF14423.1  83 sveaerlklyvenveeeeedavewaaiavgyaiandiatilniedyeeeDDddlD 137
                  s++  +++ +  ++    ++++     avg++++ +++ +l +e  +e+DDdd D
  MMETSP0890-20130614|24146_1  25 SEWLLENDWHELET---TTQQQLSSQSAVGFDARLAATAALRQEGANEDDDDDDD 76 
                  55555544443322...44445556678*************99999987766533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.63
# Mc/sec: 300.50
//
Query:       MMETSP0890-20130614|24139_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-13   48.9  17.4    8.9e-08   30.9   1.7    2.4  2  PF00641.13 Zn-finger in Ran binding protein and others
     0.0091   15.9  11.3       0.88    9.5   0.3    3.3  2  PF08273.7  Zinc-binding domain of primase-helicase
  ------ inclusion threshold ------
      0.029   14.0   9.8       0.36   10.5   1.5    2.3  2  PF12773.2  Double zinc ribbon
       0.03   13.7   5.6          1    8.8   0.7    2.4  2  PF11682.3  Protein of unknown function (DUF3279)
        5.2    6.7  11.4        3.7    7.1   0.1    3.1  4  PF00628.24 PHD-finger
          8    6.1  12.9         10    5.7   1.1    2.4  2  PF07562.9  Nine Cysteines Domain of family 3 GPCR


Domain annotation for each model (and alignments):
>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   1.7   3.9e-11   8.9e-08       2      28 ..     157     183 ..     156     185 .. 0.94
   2 !   23.5   5.1   8.3e-09   1.9e-05       3      28 ..     228     253 ..     226     255 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 3.9e-11
   PF00641.13   2 egdWdCskClvqNfawstkCvaCqapk 28 
                   gdW+C+ C ++Nf+++ +C +C+ap+
  MMETSP0890-20130614|24139_1 157 PGDWICNRCQNDNFQKREACRRCGAPR 183
                  69************************9 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 8.3e-09
   PF00641.13   3 gdWdCskClvqNfawstkCvaCqapk 28 
                  gdW C kC ++Nf+w+t+C +C +++
  MMETSP0890-20130614|24139_1 228 GDWFCAKCDNHNFQWRTECKRCRSSR 253
                  9*********************9987 PP

>> PF08273.7  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   3.5    0.0011       2.6      10      34 ..     136     167 ..     132     185 .. 0.86
   2 !    9.5   0.3   0.00039      0.88      23      34 ..     226     237 ..     216     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0011
                  ------EEE--............--EEBTTTTB CS
    PF08273.7  10 GgrDrfrifddkdgr........GtwfCrsCeg 34 
                  G+   +r  +d++g+        G+w+C+ C++
  MMETSP0890-20130614|24139_1 136 GSHQNNR-RQDRRGSrpkpttlpGDWICNRCQN 167
                  5566677.7788898999999**********76 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00039
                  ..--EEBTTTTB CS
    PF08273.7  23 grGtwfCrsCeg 34 
                   rG+wfC +C++
  MMETSP0890-20130614|24139_1 226 SRGDWFCAKCDN 237
                  35********65 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   0.00016      0.36       1      20 [.     162     181 ..     154     201 .. 0.69
   2 ?    7.6   0.7    0.0013       2.9      10      43 ..     227     257 ..     219     261 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
    PF12773.2   1 CpqCgaenpsgarfCpqCga 20 
                  C +C+++n ++ + C +Cga
  MMETSP0890-20130614|24139_1 162 CNRCQNDNFQKREACRRCGA 181
                  45555555555555555555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0013
    PF12773.2  10 sgarfCpqCgaklkeataeevlCpsCgesvspka 43 
                  +g+ fC +C +   +    +  C++C +s +++a
  MMETSP0890-20130614|24139_1 227 RGDWFCAKCDNHNFQW---RTECKRCRSSRTQEA 257
                  5677899999888833...345999988866665 PP

>> PF11682.3  Protein of unknown function (DUF3279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0021       4.7      95     117 ..     157     180 ..     138     184 .. 0.82
   2 ?    8.8   0.7   0.00045         1      93     118 ..     225     251 ..     215     258 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0021
    PF11682.3  95 vaeWyCvlCde.dyeGkklCeaCk 117
                  + +W C  C++ +++ +  C  C+
  MMETSP0890-20130614|24139_1 157 PGDWICNRCQNdNFQKREACRRCG 180
                  568******9736888999****8 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00045
    PF11682.3  93 pkvaeWyCvlCde.dyeGkklCeaCkt 118
                  +   +W+C  Cd+ +++ +  C+ C+ 
  MMETSP0890-20130614|24139_1 225 VSRGDWFCAKCDNhNFQWRTECKRCRS 251
                  46679******8626999999***985 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0016       3.7      41      50 ..     155     167 ..     142     168 .. 0.72
   2 ?   -4.0   0.1       5.1   1.2e+04      17      20 ..     176     179 ..     175     183 .. 0.53
   3 ?    7.0   0.1    0.0019       4.3      36      50 ..     223     237 ..     217     238 .. 0.76
   4 ?   -2.7   0.3         2   4.5e+03      45      49 ..     246     250 ..     245     256 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
                  T...TB-SCCCHC CS
   PF00628.24  41 g...ewlCeeCke 50 
                  +   +w+C++C++
  MMETSP0890-20130614|24139_1 155 TlpgDWICNRCQN 167
                  23349******97 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5.1
                  BSSS CS
   PF00628.24  17 CdgC 20 
                  C +C
  MMETSP0890-20130614|24139_1 176 CRRC 179
                  4444 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0019
                  HSHHSTTB-SCCCHC CS
   PF00628.24  36 eekpegewlCeeCke 50 
                  +++ +g+w+C +C++
  MMETSP0890-20130614|24139_1 223 SRVSRGDWFCAKCDN 237
                  4556679******97 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 2
                  SCCCH CS
   PF00628.24  45 CeeCk 49 
                  C++C+
  MMETSP0890-20130614|24139_1 246 CKRCR 250
                  45554 PP

>> PF07562.9  Nine Cysteines Domain of family 3 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.1    0.0046        10      26      49 ..     160     180 ..     157     184 .. 0.88
   2 ?    5.0   2.7    0.0076        17      26      51 ..     230     252 ..     227     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0046
    PF07562.9  26 fdCvpCpegeisnetdettCkkCp 49 
                  + C +C++ ++++++    C++C 
  MMETSP0890-20130614|24139_1 160 WICNRCQNDNFQKRE---ACRRCG 180
                  99*********9944...899996 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0076
    PF07562.9  26 fdCvpCpegeisnetdettCkkCpee 51 
                  + C +C++++++ +t   +Ck+C ++
  MMETSP0890-20130614|24139_1 230 WFCAKCDNHNFQWRT---ECKRCRSS 252
                  89**********955...99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.75
# Mc/sec: 1373.91
//
Query:       MMETSP0890-20130614|24150_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-20   70.8   1.2    4.9e-16   58.7   0.2    2.3  2  PF12796.2  Ankyrin repeats (3 copies)
    6.5e-18   63.4   2.4    5.9e-11   41.4   0.1    2.8  2  PF00023.25 Ankyrin repeat
    5.4e-17   61.7   1.8    3.1e-08   33.8   0.2    3.5  3  PF13637.1  Ankyrin repeats (many copies)
    5.7e-13   47.6   0.8    9.7e-07   28.3   0.0    3.3  3  PF13606.1  Ankyrin repeat
    3.6e-10   39.6   1.2    6.9e-06   26.0   0.1    3.8  3  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.2   1.8e-19   4.9e-16       3      86 ..     191     285 ..     189     288 .. 0.89
   2 !   18.5   0.0   6.1e-07    0.0017      28      81 ..     255     313 ..     255     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 1.8e-19
    PF12796.2   3 lAaengnlelvklLle.kgadvdl....getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvr.....nghlelvklLlekgadvn 86 
                   A +++++e+v++ +   + ++ +    g+tpLh+ a  gn+++ +lL+++ga++na++  +  tpLh+A++     +g++ ++++Ll++gad  
  MMETSP0890-20130614|24150_1 191 AASQKNDVEAVRIAITqDNISPSFanslGQTPLHISAMWGNIDVTQLLIQHGANINATNqLSASTPLHVAASsnrnlQGRIACARILLQAGADAT 285
                  588899*********83555555566789*******************************9***********99999999************986 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 6.1e-07
    PF12796.2  28 tpLhlAa.....eagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlek 81 
                  tpLh+Aa      +g+++++++Ll+agad    d++g  p     r +  el +lL ++
  MMETSP0890-20130614|24150_1 255 TPLHVAAssnrnLQGRIACARILLQAGADATKADADGLKPFQKVKREEAPELYELLQSA 313
                  79*****5555555778***********************9999999999999999776 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   2.2e-14   5.9e-11       2      32 ..     219     249 ..     218     250 .. 0.97
   2 !   21.1   0.1   5.9e-08   0.00016       4      31 ..     255     287 ..     254     289 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 2.2e-14
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  G+TPLH+ a++gn++v +lL+++GA++na++
  MMETSP0890-20130614|24150_1 219 GQTPLHISAMWGNIDVTQLLIQHGANINATN 249
                  9****************************98 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.9e-08
                  BHHHHHHHTT.....HHHHHHHHHHTTSSTTHB CS
   PF00023.25   4 TPLHlAalrg.....nlevvklLlsqGAdlnaq 31 
                  TPLH+Aa+++     ++ +++ Ll++GAd +  
  MMETSP0890-20130614|24150_1 255 TPLHVAASSNrnlqgRIACARILLQAGADATKA 287
                  9****************************7765 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.7e-09   2.4e-05       8      54 .]     192     239 ..     189     239 .. 0.85
   2 !   33.8   0.2   1.1e-11   3.1e-08       3      54 .]     221     278 ..     221     278 .. 0.83
   3 !   15.8   0.0   4.7e-06     0.013       2      40 ..     254     297 ..     253     300 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 8.7e-09
    PF13637.1   8 aaisgrlelvklLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  a +++++e+v+  + + +i++   ++ G t+Lhi a++gni++++lL+
  MMETSP0890-20130614|24150_1 192 ASQKNDVEAVRIAItQDNISPSFANSLGQTPLHISAMWGNIDVTQLLI 239
                  455999*****9995557887666999********************8 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.1e-11
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtd.esGntaLhiAalrg.....nieilklLl 54 
                  t+Lh  a++g++++ +lL+++g++in+t+  s  t+Lh+Aa+ +     +i +++ Ll
  MMETSP0890-20130614|24150_1 221 TPLHISAMWGNIDVTQLLIQHGANINATNqLSASTPLHVAASSNrnlqgRIACARILL 278
                  79**************************548888*******55533333588888876 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 4.7e-06
    PF13637.1   2 ltaLhyaai.....sgrlelvklLlekgidinrtdesGntaLhi 40 
                   t+Lh+aa+     +gr+ +++ Ll+ g+d  + d++G  ++++
  MMETSP0890-20130614|24150_1 254 STPLHVAASsnrnlQGRIACARILLQAGADATKADADGLKPFQK 297
                  599***************************8888*****99986 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   3.4e+03       8      22 ..     190     205 ..     189     210 .. 0.74
   2 !   28.3   0.0   3.5e-10   9.7e-07       2      30 .]     219     247 ..     218     247 .. 0.97
   3 !   15.8   0.0   3.9e-06     0.011       4      27 ..     255     283 ..     254     286 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.2
    PF13606.1   8 lAasngr.ielveaLl 22 
                  lAas+++ +e+v++ +
  MMETSP0890-20130614|24150_1 190 LAASQKNdVEAVRIAI 205
                  6888764389998766 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 3.5e-10
    PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                  G+TpLh+ a  g+i++ ++L+++ga+ina
  MMETSP0890-20130614|24150_1 219 GQTPLHISAMWGNIDVTQLLIQHGANINA 247
                  9**************************96 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 3.9e-06
    PF13606.1   4 TpLhlAas.....ngrielveaLlengad 27 
                  TpLh+Aas     +gri+ +++Ll++gad
  MMETSP0890-20130614|24150_1 255 TPLHVAASsnrnlQGRIACARILLQAGAD 283
                  9*******433333569***********9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.28   7.6e+02      22      37 ..     190     207 ..     189     213 .. 0.78
   2 !   26.0   0.1   2.5e-09   6.9e-06      13      56 .]     216     260 ..     206     260 .. 0.91
   3 !   13.4   0.1   2.3e-05     0.063      17      54 ..     254     296 ..     249     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.28
    PF13857.1  22 lAak.ggalevvrlLl.a 37 
                  lAa+ ++++e+vr+ + +
  MMETSP0890-20130614|24150_1 190 LAASqKNDVEAVRIAItQ 207
                  57777********99854 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.5e-09
    PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldlA 56 
                  +  g+tpLh+ a+ g+ +v +lL+++ga++n+++     t+l++A
  MMETSP0890-20130614|24150_1 216 NSLGQTPLHISAMWGNIDVTQLLIQHGANINATNQLSaSTPLHVA 260
                  66799*************************************998 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 2.3e-05
    PF13857.1  17 ntpLhlAak.ggale....vvrlLlapgadlnlrdsdgltald 54 
                  +tpLh+Aa+ + +l+    ++r+Ll++gad++  d+dgl +++
  MMETSP0890-20130614|24150_1 254 STPLHVAASsNRNLQgriaCARILLQAGADATKADADGLKPFQ 296
                  49******866555433339******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:01.28
# Mc/sec: 640.28
//
Query:       MMETSP0890-20130614|24173_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-162  541.7  17.7   1.4e-162  541.6  12.2    1.0  1  PF02233.11 NAD(P) transhydrogenase beta subunit
  ------ inclusion threshold ------
      0.042   13.4   0.7       0.15   11.7   0.5    2.0  1  PF00205.17 Thiamine pyrophosphate enzyme, central domain
          8    6.0   7.9        1.3    8.6   1.0    2.7  2  PF14074.1  Protein of unknown function (DUF4257)


Domain annotation for each model (and alignments):
>> PF02233.11  NAD(P) transhydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.6  12.2    3e-166  1.4e-162      62     463 ..       2     401 ..       1     402 [. 0.95

  Alignments for each domain:
  == domain 1    score: 541.6 bits;  conditional E-value: 3e-166
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX------HHHHHHHHHT-SEEEEE-----TTTT-HHHHHHHHHHHHH---EEEEEE-TT-------HHHHHHHTT--GGGEEEHHHHGGGGGG-SEEEE----GGG-GGGTSSTTSTT-------GGG---EEEE-SSS---------GGGGSTTEEEE---HHHHHHHHHHH CS
   PF02233.11  62 vvggviGlliakkvemtelPqLvaifhslvGlaavlvalaeflkeeealleeasslavlskvevllgvfigavtftGsivafgkLqgiikskplllpkrhvlnlallvvsvlllvvfilseslt...lkllllllvtaislvlGlllvlaiGgaDmPvvislLnsysGwaaaaaGflLnnsllivaGalvgssGaiLsyimckamnrsllsvilGgfgeegskaaakekaeekevkeisaeevaellleassviivPGYGlavaqaqhavaelakeLeergvevrfaihPvaGrlPGhlnvLLaeanvpYdivleleeinedlaetDvvlviGanDtvnpaakedpnspiaGmPvlevekakqvivlkrslasGyagvdnplffkentqmllgdakksveeilee 463
                  ++gg +G  ia++v+ telPq va+fhslvG+aa l+a+ ef +   +++++   +++ + + ++l++ ig++t tGs++afgkL+g i+s+pl l+ r+ +n++++++s+ +l  f++ +s+    l++++l+  +++s++lGl+++++iGg D+Pvvi++LnsysGwa++a+Gf+L+  ll+++Gal+gssGaiL++imc amnr +++vilGg+g+  ++++a  + e++e++ei  + +a++l+ea sv+ivPGYGlava+aq+avae+ak L+++gv+ rfaihPvaGr+PG+lnvLLaea+vpYdiv+e++ein++l +tD++lviGanDtvn+aa edpns iaGmPv++v+kakq iv+kr+++sGyag +np+ffk+n +mllgdakk+++ + ++
  MMETSP0890-20130614|24173_1   2 IIGGSVGFAIANRVSPTELPQTVAAFHSLVGIAASLTAIGEFAR-IVHYAQD---MTTSTAISLFLATWIGGITATGSMIAFGKLNGNISSAPLALKYRDPINITMAATSIGALLLFLIAKSMQfyaLGFIALFFAAILSATLGLHVTASIGGGDVPVVITVLNSYSGWALCAEGFMLDSALLTIVGALIGSSGAILTHIMCVAMNRDIVHVILGGYGSVAKSPSAM-SLEHGEHTEIDLDAAATMLKEAFSVVIVPGYGLAVAKAQYAVAEIAKILNDSGVKTRFAIHPVAGRMPGQLNVLLAEAGVPYDIVFEMDEINDELPSTDIALVIGANDTVNSAAVEDPNSIIAGMPVIQVWKAKQSIVMKRTMGSGYAGAQNPVFFKHNNAMLLGDAKKMCDGLRSK 401
                  799***************************************55.4444444...578999*****************************************************99999888751115667888888*********************************************************************************997776666.569************************************************************************************************************************************************************************988765 PP

>> PF00205.17  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   3.2e-05      0.15       1      48 [.     236     283 ..     236     395 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.2e-05
                  HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEECGGG CS
   PF00205.17   1 ideaaellkaakrPvilvGggvrrseakeelralaeklgipvvttlmg 48 
                  +d+aa++lk+a  +vi+ G+g + ++a+ ++++ a+ l+   v t  +
  MMETSP0890-20130614|24173_1 236 LDAAATMLKEAFSVVIVPGYGLAVAKAQYAVAEIAKILNDSGVKTRFA 283
                  589*****************************9999886555555444 PP

>> PF14074.1  Protein of unknown function (DUF4257)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.0   0.00028       1.3       3      78 ..      62     167 ..      60     170 .. 0.78
   2 ?   -0.3   0.5      0.16   7.5e+02      42      66 ..     185     207 ..     179     217 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00028
    PF14074.1   3 llavliggi...gglighvrkkgkiklP...........................krdkkafdlGfledllvGvlagiLavtvvedvksllvivsvSllagigGes 78 
                  +la  iggi   g++i   + +g+i                               ++ +++ lGf+  ++  +l+++L   v +      v v++++l  ++G +
  MMETSP0890-20130614|24173_1  62 FLATWIGGItatGSMIAFGKLNGNISSAplalkyrdpinitmaatsigalllfliAKSMQFYALGFIALFFAAILSATLGLHVTASIGGGDVPVVITVLNSYSGWA 167
                  566677776222344555566777764348888888888888888888888888878899*********************9999999999999999999999976 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.16
    PF14074.1  42 llvGvlagiLavtvvedvksllviv 66 
                   l+G+ ++iL   + + ++ +  iv
  MMETSP0890-20130614|24173_1 185 ALIGSSGAILTHIMCVAMNRD--IV 207
                  478888888887544443333..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       667  (0.0487858); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.99
# Mc/sec: 980.33
//
Query:       MMETSP0890-20130614|24179_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-07   30.3   0.1    8.4e-07   29.2   0.1    1.6  1  PF06337.7 DUSP domain


Domain annotation for each model (and alignments):
>> PF06337.7  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   6.1e-11   8.4e-07       3      93 ..      38     127 ..      37     133 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 6.1e-11
    PF06337.7   3 kwyliskkWleqwkdyvkydekeedsekssaqkpGpIdnssLveteeekakstl...lengrlkpqlqegkdyelvpeevweaLyewY.gggpei 93 
                   wy++s +W+e w  + +    + +s +s    pGpI n++L+ + e     ++   ++ +  k    ++ +y  v+  vw+++ e Y g+gp+i
  MMETSP0890-20130614|24179_1  38 AWYIVSASWMEAWLAFANGFLYKDKSSPS----PGPIWNEELLIQGEDVWLAKPgliPQTSDRK-SGPNSGHYRRVNNHVWQVFTELYpGSGPTI 127
                  5***************8776666555555....****999998888877766667533333333.4455556****************5588877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.55
# Mc/sec: 967.26
//
Query:       MMETSP0890-20130614|24180_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-27   95.2   0.1    7.4e-27   94.6   0.1    1.2  1  PF13622.1  Thioesterase-like superfamily
    5.6e-20   71.1   0.1    5.4e-15   55.0   0.0    2.4  2  PF02551.10 Acyl-CoA thioesterase


Domain annotation for each model (and alignments):
>> PF13622.1  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.1   1.1e-30   7.4e-27       5     252 ..      61     328 ..      54     329 .] 0.69

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 1.1e-30
    PF13622.1   5 wcpggrvayGGylaalllaAartaprdfrphsltvdFlrpvpag.patvtvevlrdGrsfstlqvtlsQdgkvvatatasfarpepgpseds....aglasrlpeppppapppdddplaadgedgvpgeffiwg........ldmrkvdmapynegk...................spepggdavldaWvrfrdplna.......h.............drnaLaflaDalppatlaaldgaayaaaatlsltvhf.krlp.aeggeWlllrartkragnGradsearlwdedGelvAtstQ 252
                  w   gr +yGG ++a+++ ++ +++ d+ + sl+++F++p+++  p++++v+ l dG+s+s ++vt+sQ+g++++t tas+++ ++++  ++    + +a+++ +++p +p  ++  l++++++++  e +  +        +d+r+v+ +p    +                   +                            h             d     fla al+p+ +a  +++  ++a t+s ++ f +++  +  ++ ll+  +++ a++Gra + ++++d +G+l+ ++ Q
  MMETSP0890-20130614|24180_1  61 W---GR-VYGGQTLAQAMDVCLQSTKDRLVQSLNAYFVKPGNVElPIDYHVTKLSDGKSLSMRTVTASQKGQIIFTMTASLGDDQSSS--QQiyhqQSQAPQTITSAPLVPTLQE-RLEPHSDRMKNYELR--RtyvnegnpFDFRPVHFFPMWLAPkanqlkpqlstyiampalsQ--------------------VypqeeslHtaglhaklfayasD---FNFLATALRPHPIANWSPK-LQMA-TISHSLIFhRPADtRLDKDFLLYAKSSPIARAGRAFVLGEVFDNQGRLLLSASQ 328
                  4...55.****99999999999988889*******************************************************99876..4464576666777777777773333.222222233323233..13477777799999987777665444433333333333333331....................13332222133332332222222...5566666666666666664.5666.8887777634444466678999999************************99998 PP

>> PF02551.10  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.6e-06     0.025      78     127 ..      88     133 ..      63     152 .. 0.81
   2 !   55.0   0.0   7.8e-19   5.4e-15      47     129 ..     241     328 ..     214     329 .] 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.6e-06
                  ...EE.EE-----TTS--EEEEEE........EE----EEEETTEEEEEE CS
   PF02551.10  78 sldHsvyFlrpgdlnewilydvespsasggrgLrqGriFstqdgkliasv 127
                  sl+ + yF++pg+++ +i y+v +   s+g+ L    + ++q+g++i++ 
  MMETSP0890-20130614|24180_1  88 SLN-A-YFVKPGNVELPIDYHVTK--LSDGKSLSMRTVTASQKGQIIFTM 133
                  555.4.******************..66666666666666********94 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 7.8e-19
                  EEEE.................................EE.EE-----TT...S--EEEEEE........EE----EEEETTEEEEEE-- CS
   PF02551.10  47 lhsvllaYlSDltllltalttHe..lledslqv.sldHsvyFlrpgdln...ewilydvespsasggrgLrqGriFstqdgkliasvqq 129
                  lh  l+aY+SD+++l tal +H      ++lq+ ++ Hs+ F+rp d++   + +ly+ +sp a  gr+++ G++F + +g+l+ s++q
  MMETSP0890-20130614|24180_1 241 LHAKLFAYASDFNFLATALRPHPiaNWSPKLQMaTISHSLIFHRPADTRldkDFLLYAKSSPIARAGRAFVLGEVF-DNQGRLLLSASQ 328
                  577789*****************9888999***9*************853225699********************.899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       701  (0.0512727); expected 273.4 (0.02)
Passed bias filter:                      532  (0.0389116); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.45s 00:00:01.13 Elapsed: 00:00:00.80
# Mc/sec: 985.50
//
Query:       MMETSP0890-20130614|24192_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-17   62.2   0.0    4.1e-17   61.8   0.0    1.2  1  PF02545.9 Maf-like protein


Domain annotation for each model (and alignments):
>> PF02545.9  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0     3e-21   4.1e-17     107     186 ..       2      79 ..       1      87 [. 0.93

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 3e-21
    PF02545.9 107 glalikkekneltleteetkvkfkelsdeeieeYvesgepldkaGafkiqglgalliekieGdyynvvGLplkklvkllk 186
                  g+al+ + k++ ++  e t+v+f +ls   i++Yv +ge+ldkaG+++iqg ++++++  +G++ nv+GLpl  l + l+
  MMETSP0890-20130614|24192_1   2 GIALFFQGKKHVFC--ERTDVTFFSLSPFLIHSYVYTGEGLDKAGGYGIQGSANAFVDLTHGEFTNVIGLPLRRLQRELH 79 
                  67888899999999..*********************************************************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 626.14
//
Query:       MMETSP0890-20130614|24189_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|24197_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 285.28
//
Query:       MMETSP0890-20130614|24204_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-14   51.4   8.7    2.9e-10   39.5   0.3    3.1  3  PF13414.1  TPR repeat
    0.00012   21.3   6.8      0.078   12.5   0.0    3.6  4  PF00515.23 Tetratricopeptide repeat
    0.00029   20.4   9.2        1.3    9.0   0.0    4.4  4  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.0   0.3        0.3   11.2   0.0    2.8  2  PF13431.1  Tetratricopeptide repeat
      0.031   14.0   5.8       0.25   11.1   0.1    3.1  3  PF13424.1  Tetratricopeptide repeat
      0.059   13.2   4.7       0.18   11.6   3.2    2.1  1  PF05164.8  Cell division protein ZapA
       0.16   12.5  10.8        1.4    9.5   0.8    3.0  3  PF13432.1  Tetratricopeptide repeat
       0.22   12.1   8.0         22    5.9   0.2    4.2  4  PF13428.1  Tetratricopeptide repeat
        1.7    8.4   5.8        9.3    6.0   0.0    3.3  3  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   4.4e-06    0.0067      30      67 ..      10      46 ..       2      48 .. 0.84
   2 !   39.5   0.3   1.9e-13   2.9e-10       6      69 .]     105     172 ..     100     172 .. 0.85
   3 ?    2.1   0.1     0.086   1.3e+02      30      51 ..     168     189 ..     165     219 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.4e-06
    PF13414.1 30 leldpnnaelyynlAlaylklgkdyeeAledyekAlel 67
                 ++l+p na++ y lA ay++ + + ++A ++ ++A++l
  MMETSP0890-20130614|24204_1 10 VRLCPRNAQCRYDLACAYEEEN-ELRKAFAEVRMAVNL 46
                 369*****************87.689*****9999877 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 1.9e-13
    PF13414.1   6 lkelGnalfkegdydeAieayekAlel....d.pnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                   k +Gn+lf  +++ +A+e y+kA++     d + + +l++n+A+a+l+l++  ++A+ d++ + e dP
  MMETSP0890-20130614|24204_1 105 CKLAGNELFVTKKFSQAVESYTKAIDAlrarDlEVDSKLLSNRAAAFLQLNE-KVKAASDARASTEADP 172
                  6889*********************9733332244788************96.59*********99998 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.086
    PF13414.1  30 leldpnnaelyynlAlaylklg 51 
                  +e dp+ ++ +  lA+a l   
  MMETSP0890-20130614|24204_1 168 TEADPDWWKGHWYLAQAVLGIA 189
                  6778888888888888877654 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4      0.04        61       1      20 [.      17      36 ..      17      38 .. 0.89
   2 !   12.5   0.0   5.1e-05     0.078       8      28 ..     109     129 ..     105     131 .. 0.93
   3 !    7.5   0.0    0.0018       2.8       2      32 ..     142     172 ..     141     173 .. 0.84
   4 ?   -3.5   0.1       5.7   8.6e+03      21      26 ..     208     213 ..     205     216 .. 0.45

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.04
                 HHHHHHHHHHHHHTT-HHHH CS
   PF00515.23  1 akalynlGnaylklgkydeA 20
                 a++ y l+ ay + +++ +A
  MMETSP0890-20130614|24204_1 17 AQCRYDLACAYEEENELRKA 36
                 667899***********999 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 5.1e-05
                  HHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   8 GnaylklgkydeAleyyekAL 28 
                  Gn ++  +k+ +A+e y kA+
  MMETSP0890-20130614|24204_1 109 GNELFVTKKFSQAVESYTKAI 129
                  8999****************9 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0018
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnP 32 
                  k l n+++a+l+l++  +A  + +   e +P
  MMETSP0890-20130614|24204_1 142 KLLSNRAAAFLQLNEKVKAASDARASTEADP 172
                  6899**************9888777777666 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 5.7
                  HHHHHH CS
   PF00515.23  21 leyyek 26 
                    + e 
  MMETSP0890-20130614|24204_1 208 KRALES 213
                  333333 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.4      0.02        30       2      28 ..      18      44 ..      17      50 .. 0.81
   2 !    9.0   0.0   0.00083       1.3       6      29 ..     107     130 ..     102     132 .. 0.88
   3 !    8.9   0.0   0.00091       1.4       2      33 ..     142     173 ..     141     174 .. 0.94
   4 ?    0.4   0.1      0.45   6.9e+02      15      29 ..     202     216 ..     195     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  2 ealynlGlayyklgdyeeAleafekAl 28
                 ++ y l++ay++ +++ +A +  + A+
  MMETSP0890-20130614|24204_1 18 QCRYDLACAYEEENELRKAFAEVRMAV 44
                 56799**************87766666 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00083
                  HHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                  + G+ ++  +++ +A+e + kA+ 
  MMETSP0890-20130614|24204_1 107 LAGNELFVTKKFSQAVESYTKAID 130
                  67999*****************95 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00091
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  ++l n++ a ++l++  +A+ + + + e dP+
  MMETSP0890-20130614|24204_1 142 KLLSNRAAAFLQLNEKVKAASDARASTEADPD 173
                  6799**************************98 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.45
                  T-HHHHHHHHHHHHH CS
   PF07719.12  15 gdyeeAleafekAle 29 
                   + +eA++a+e +l+
  MMETSP0890-20130614|24204_1 202 ERAQEAKRALESCLK 216
                  677999999998886 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002       0.3       7      32 ..      11      36 ..       9      38 .. 0.93
   2 ?    0.4   0.0       0.6   9.1e+02      12      32 ..     140     160 ..     125     162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0002
    PF13431.1  7 eldPnnadaynnLAelllnnGdleeA 32
                 +l+P na+ ++ LA ++ + ++l++A
  MMETSP0890-20130614|24204_1 11 RLCPRNAQCRYDLACAYEEENELRKA 36
                 689******************99998 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.6
    PF13431.1  12 nadaynnLAelllnnGdleeA 32 
                  ++ ++ n+A ++l +++  +A
  MMETSP0890-20130614|24204_1 140 DSKLLSNRAAAFLQLNEKVKA 160
                  577888999998888877666 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00017      0.25       5      41 ..      17      53 ..      14      74 .. 0.85
   2 ?    3.3   0.0     0.045        69      60      77 ..     116     133 ..     107     134 .. 0.84
   3 ?   -0.7   0.0      0.84   1.3e+03      58      74 ..     200     216 ..     195     219 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
    PF13424.1  5 atilnnlalvlrrlgdydeAlelyekalellrelgdd 41
                 a++ + la++++++ ++ +A +  + a++l +++g++
  MMETSP0890-20130614|24204_1 17 AQCRYDLACAYEEENELRKAFAEVRMAVNLVKSYGRA 53
                 88999*************************9999975 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.045
    PF13424.1  60 gdydeAleylekAleiae 77 
                  +++++A+e + kA+++ +
  MMETSP0890-20130614|24204_1 116 KKFSQAVESYTKAIDALR 133
                  688999999999999876 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.84
    PF13424.1  58 algdydeAleylekAle 74 
                   +++ +eA++ le +l+
  MMETSP0890-20130614|24204_1 200 NAERAQEAKRALESCLK 216
                  55677777777776665 PP

>> PF05164.8  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.2   0.00012      0.18      10      68 ..      20      77 ..      17     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
    PF05164.8 10 eYtlaCgeeeeeylrkaaeyvdkkiaeikeagkrlseerlavLaaLnladellkakeea 68
                 +Y laC  eee++lrka ++v  +++ +k +++r+ ++ + + aa++ ad  ++ ++e+
  MMETSP0890-20130614|24204_1 20 RYDLACAYEEENELRKAFAEVRMAVNLVK-SYGRAWKALVRIQAAMDAADIKYDDDDEK 77
                 69*******************88886555.67889999999999999998777665555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2    0.0013         2      21      58 ..       4      44 ..       3      68 .. 0.88
   2 ?    9.5   0.8   0.00092       1.4       4      63 ..     109     173 ..     107     173 .. 0.84
   3 ?   -2.6   0.1       5.7   8.7e+03      11      21 ..     202     212 ..     199     217 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0013
    PF13432.1 21 eaalala...PeaaeallllaeallrlgrldeAaallraal 58
                 e+al +    P++a+ ++ la a+ + ++l +A a  r a+
  MMETSP0890-20130614|24204_1  4 ERALSEVrlcPRNAQCRYDLACAYEEENELRKAFAEVRMAV 44
                 5677777889*********************9988777765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00092
    PF13432.1   4 ArallraGdydeAlaaleaalala.....PeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  +++l+  +++ +A++ + +a+++        +   l ++a a+l+l++  +Aa   ra  +++Pd
  MMETSP0890-20130614|24204_1 109 GNELFVTKKFSQAVESYTKAIDALrardlEVDSKLLSNRAAAFLQLNEKVKAASDARASTEADPD 173
                  7888889999999999999999997755555**********************777777788875 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 5.7
    PF13432.1  11 GdydeAlaale 21 
                   + +eA +ale
  MMETSP0890-20130614|24204_1 202 ERAQEAKRALE 212
                  34445555554 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2     0.014        22       4      43 ..      20      59 ..       4      60 .. 0.93
   2 ?    0.1   0.0       1.1   1.6e+03      17      26 ..     125     134 ..     109     139 .. 0.65
   3 ?    5.7   0.5     0.016        25       3      44 .]     143     184 ..     141     184 .. 0.91
   4 ?    1.1   0.0      0.49   7.5e+02      13      31 ..     200     218 ..     196     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.014
    PF13428.1  4 llalarallalGdpdeAiallrralalaPddaealllLar 43
                 +++la a+++ +++ +A a  r a+ l  +  +a+++L r
  MMETSP0890-20130614|24204_1 20 RYDLACAYEEENELRKAFAEVRMAVNLVKSYGRAWKALVR 59
                 799***********************99999999999987 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.1
    PF13428.1  17 pdeAiallrr 26 
                  + +Ai++lr+
  MMETSP0890-20130614|24204_1 125 YTKAIDALRA 134
                  4555555554 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.016
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  +l  +a+a+l+l++  +A+  +r+  +++Pd +  + +La++
  MMETSP0890-20130614|24204_1 143 LLSNRAAAFLQLNEKVKAASDARASTEADPDWWKGHWYLAQA 184
                  67889**************************99999999985 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.49
    PF13428.1  13 alGdpdeAiallrralala 31 
                  ++++ +eA ++l+  l+++
  MMETSP0890-20130614|24204_1 200 NAERAQEAKRALESCLKTS 218
                  5678899999999998854 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.34   5.2e+02      25      53 ..      13      41 ..       4      67 .. 0.79
   2 ?    2.7   0.1     0.065        99      28      61 ..     140     173 ..     119     183 .. 0.82
   3 ?    6.0   0.0    0.0061       9.3      36      69 ..     195     232 ..     194     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.34
    PF13371.1 25 aPddpyerRDrGlllaqlgclaaAaedLe 53
                  P  ++ r+D + ++++ ++l+ A ++ +
  MMETSP0890-20130614|24204_1 13 CPRNAQCRYDLACAYEEENELRKAFAEVR 41
                 47788889999999999999888877765 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.065
    PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcpd 61 
                  d  ++  r+ +  ql++   Aa d +a  e +pd
  MMETSP0890-20130614|24204_1 140 DSKLLSNRAAAFLQLNEKVKAASDARASTEADPD 173
                  5667889*****************9998888885 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0061
    PF13371.1  36 GlllaqlgclaaAaedLeaflelcp....dapdaelir 69 
                  G + a  ++ ++A ++Le +l+ +      +p++e++r
  MMETSP0890-20130614|24204_1 195 GACTANAERAQEAKRALESCLKTSTlpsdKRPTVERLR 232
                  8899999**************66665577888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 1084.90
//
Query:       MMETSP0890-20130614|24219_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-17   63.7   0.3    1.9e-17   63.5   0.2    1.1  1  PF01196.14 Ribosomal protein L17
  ------ inclusion threshold ------
       0.26   10.9   2.3       0.49   10.0   1.5    1.5  1  PF12958.2  Protein of unknown function (DUF3847)


Domain annotation for each model (and alignments):
>> PF01196.14  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.2   2.8e-21   1.9e-17       1      67 [.      22      88 ..      22      89 .] 0.98

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 2.8e-21
                 HHHHHHHHHHH---EEEEHHHHHHH---HHHHHHHHT---HHHHHHHHTTS--HHHHHHHHHTHHHH CS
   PF01196.14  1 llrnlvtsLieherIetTlakAkelrklveklitlakkkelaarrqalavlkdkevvkklfdelapr 67
                 +lrn+vtsLi+herI+tT++kAk l++++ekli +ak ++ ++ + a+a+++++ ++ klf+ l pr
  MMETSP0890-20130614|24219_1 22 MLRNMVTSLIKHERIKTTTPKAKVLKPYAEKLIRYAKVGTDHSMKLAAAIVREQMALFKLFQVLGPR 88
                 89************************************************************99987 PP

>> PF12958.2  Protein of unknown function (DUF3847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5   7.2e-05      0.49      26      66 ..       5      40 ..       2      52 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.2e-05
    PF12958.2 26 qLknqekklekkeRkeRtHRLitrgailEslieepeeLTde 66
                  Lkn++ kl    Rk  +HRL     ++ sli++ +  T +
  MMETSP0890-20130614|24219_1  5 GLKNRK-KLS---RK-TSHRLAMLRNMVTSLIKHERIKTTT 40
                 566664.455...55.4899999999999999877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 380.85
//
Query:       MMETSP0890-20130614|24212_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-06   25.8   0.0    8.1e-06   25.3   0.0    1.2  1  PF00782.15 Dual specificity phosphatase, catalytic domain


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.9e-10   8.1e-06      38     115 ..     105     183 ..      69     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.9e-10
                  ---EEEE-----STT--CGGGHHHHHHHHHHH..CC----EEEE-----HHHHHHHHHHHHHHCT-HHHHHHHHHHHHST CS
   PF00782.15  38 seieylripvedetetkiskeleeavefieka..eqkgkkvlVHCqaGisRSatliiaYlmktknlslneAyefvkerrs 115
                  ++++  ri +++ t++   ++l  av+fi+    ++ +++v+V C  Gi   +++i+a+l+++++++l++A +++ +r +
  MMETSP0890-20130614|24212_1 105 EDFDIARIRIRE-TDSLHIDDLTLAVRFIRHRldTEPQRRVFVSCPDGIRFAPAFILAFLISSQQCELDHAAAALDRRLP 183
                  455555566666.8889999**********88788899***********************************9977754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 883.90
//
Query:       MMETSP0890-20130614|24229_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-09   35.3   0.0    1.5e-08   34.5   0.0    1.4  1  PF02798.15 Glutathione S-transferase, N-terminal domain
     0.0028   17.7   0.0     0.0083   16.2   0.0    1.8  2  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.042   13.7   0.0      0.079   12.8   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   3.3e-12   1.5e-08       3      76 .]      47     115 ..      45     115 .. 0.97

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3.3e-12
                  EEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT..S-SSEEEETTTEEEESHHHHHHHHHH CS
   PF02798.15   3 ltlfnhrgraeslrillaekgveyeivrvdfeagegkspewlklnpki..grvPaledgdglklteSlAIarYlar 76 
                  l +f+++ + e++r+ll    +++ ++rv+         ew  ++pk   g++P+l   ++  lt+S  I+rYla+
  MMETSP0890-20130614|24229_1  47 LQYFDIPALGEPIRVLLSLGRFNWIDERVAY-------NEWPEIKPKTkwGQLPILLTENNYILTQSKSICRYLAK 115
                  78*****************************.......************************************95 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.1   9.6e+03      26      41 ..      24      39 ..      13      51 .. 0.55
   2 !   16.2   0.0   1.8e-06    0.0083      35      69 ..      80     115 ..      58     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.1
                 E----TTTTHHHHHHH CS
    PF13417.1 26 lvevtpgkkrpellal 41
                 ++ + ++kk+++ +++
  MMETSP0890-20130614|24229_1 24 WIVLRKKKKEKNEAEI 39
                 3333334443333333 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.8e-06
                  HHHHHHH-TT--SSEEE--.--EEESHHHHHHHHHH CS
    PF13417.1  35 rpellalnpkgkvPvLedd.gevltdSlvIieyLee 69 
                   pe++ +++ g++P+L ++ + +lt+S +I++yL +
  MMETSP0890-20130614|24229_1  80 WPEIKPKTKWGQLPILLTEnNYILTQSKSICRYLAK 115
                  57889999********877266************86 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05     0.079      36      69 ..      79     115 ..      22     116 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.7e-05
                  HHHHH----...--SEEE.----EEESHHHHHHHHHH CS
    PF13409.1  36 ellalsprg...tVPvLwdkdgtvineSseIlrylne 69 
                  e ++++p+    ++P+L ++++ +++ S  I+ryl++
  MMETSP0890-20130614|24229_1  79 EWPEIKPKTkwgQLPILLTENNYILTQSKSICRYLAK 115
                  2366666652227*****98888************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.72
# Mc/sec: 931.92
//
Query:       MMETSP0890-20130614|24232_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.33s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 433.46
//
Query:       MMETSP0890-20130614|24240_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.076   13.4   0.0       0.13   12.7   0.0    1.4  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.6e-06      0.13       2      77 ..      37     115 ..      36     116 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.6e-06
                  --EEEEETTEEEEEEE----..---S-EEEE.E----EEEEE---....EEE---BSS-EEEEEEEEEE---EEEEEEE CS
   PF04969.11   2 rydWyQtleeVtitipvkgv..ikkedvkve.ikkkslkvsikgpgekeyllegeLfgeIdpeesswkiedtkieitLk 77 
                   y W+  +++V +++++ g   i +e +  + ++++++++++  p +k++l   +Lfg +   e++ k  ++++++++ 
  MMETSP0890-20130614|24240_1  37 DYAWSDGKKKVSVYVTLDGLdaIESEAITAKvLGERHVRLELVFPTGKRILDLQNLFGRVGSIEVTPKKGKNQLVLKIH 115
                  599*****************9999999999989***********99999666666**9998888877777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 653.25
//
Query:       MMETSP0890-20130614|24253_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-26   92.1   0.0      4e-26   92.0   0.0    1.0  1  PF08282.7  haloacid dehalogenase-like hydrolase
    1.5e-09   37.3   0.0    1.9e-09   37.0   0.0    1.1  1  PF05116.8  Sucrose-6F-phosphate phosphohydrolase
  ------ inclusion threshold ------
       0.07   13.5   0.0      0.093   13.1   0.0    1.3  1  PF00702.21 haloacid dehalogenase-like hydrolase
      0.077   13.0   0.0       0.13   12.3   0.0    1.3  1  PF12710.2  haloacid dehalogenase-like hydrolase
       0.11   11.2   0.0       0.15   10.8   0.0    1.2  1  PF02358.11 Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.5e-29     4e-26      83     241 ..       6     167 ..       1     168 [] 0.88

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 1.5e-29
                  HHHHHHHHHHHCT...SEEEEE---EEEEC-TT-HHHHHHHCCCTSCEEEES-HCCHS-S--SEEEEE--GGGHHHHHHHHHCCTTTTCEEEEEETTEEEEEE----HHHHHHHHHHHTT.--GGGEEEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE CS
    PF08282.7  83 avkeiikllkenn...leillytedkvyvinkksekkakeeeknkkkkeekkeeeelededinkililedkedldelekelkeelnklititsssegsleiipkgvsKgtalkklakaln.isleeviafGDgeNDieMLelaglgvAmgnaspevkaaAdyv 241
                  +v+ +  ++k ++     ++ y  d +++ ++ + +++ e  +++k+ + + + ++ ++ ++nk+lil ++++l +++ ++++ l++ ++its   ++le++p g+sK  ++++l+++l+ +++ + +a+GDgeNDi ML++a +gvA++nasp+vk aAd +
  MMETSP0890-20130614|24253_1   6 TVQIVQSICKGHEasnFFLVAYCRDCLFSPTP-EASRVAELATFYKEPKPIMWPSNSQTISPNKLLILGEPQSLLDARPRIEQSLESYASITSAMSNMLEVLPLGASKRLGVQALCNHLGtCEHTQLLAIGDGENDIDMLRHAAIGVALENASPSVKRAADII 167
                  44444444444444437777888999999999.9999999999999999999*******************************************************************8357899**********************************976 PP

>> PF05116.8  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0     7e-13   1.9e-09     148     212 ..      94     159 ..      67     166 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 7e-13
                  EEEEE---EEEEEETT-----HHHHHHHHHT--.GGGEEEE---------TTSS-B--B-TT--HH CS
    PF05116.8 148 kviyssgkdlDilPkraskgeAlryLakklele.lenilvcGdsgnDeellignvrgVvVgnaqee 212
                  ++   + ++l +lP +ask   ++ L+++l++    ++l  Gd +nD+++l++   gV + na++ 
  MMETSP0890-20130614|24253_1  94 SITSAMSNMLEVLPLGASKRLGVQALCNHLGTCeHTQLLAIGDGENDIDMLRHAAIGVALENASPS 159
                  455566789*********************9875899**************************998 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05     0.093     172     203 ..     115     147 ..      78     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.4e-05
                  HHHHHHHHHTS-GG.GEEEEESSCTTHHHHHHT CS
                  xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   PF00702.21 172 lfvaaieeLqidpg.evamvGDgvnDapalaaA 203
                   ++a++  L++ ++ + +++GDg nD+ +l++A
  MMETSP0890-20130614|24253_1 115 GVQALCNHLGTCEHtQLLAIGDGENDIDMLRHA 147
                  458889999998999***************998 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.6e-05      0.13     171     191 .]     126     145 ..      86     145 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.6e-05
                  T----S--EE---GGGHHHHH CS
    PF12710.2 171 qvggrivvaiGDsanDlpalk 191
                  +++ + ++aiGD+ nD+++l+
  MMETSP0890-20130614|24253_1 126 CEHTQ-LLAIGDGENDIDMLR 145
                  34333.79***********97 PP

>> PF02358.11  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.4e-05      0.15     153     201 ..      99     145 ..      79     161 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.4e-05
   PF02358.11 153 gkkvvevrpvgvsKGkaverlleelgsanseddfvlciGDdrtDedmFk 201
                    +++ev p g sK+  v++l ++lg  ++e +  l+iGD   D dm +
  MMETSP0890-20130614|24253_1  99 MSNMLEVLPLGASKRLGVQALCNHLG--TCEHTQLLAIGDGENDIDMLR 145
                  5789*********************9..69**************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.44s 00:00:00.90 Elapsed: 00:00:00.76
# Mc/sec: 529.72
//
Query:       MMETSP0890-20130614|24252_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-16   59.8   0.0      4e-16   58.8   0.0    1.5  1  PF02214.17 K+ channel tetramerisation domain
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.026   14.0   0.0    1.3  1  PF03091.10 CutA1 divalent ion tolerance protein
      0.098   12.2   1.1       0.14   11.7   0.8    1.2  1  PF07926.7  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> PF02214.17  K+ channel tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   8.8e-20     4e-16       1      91 [.      71     161 ..      71     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 8.8e-20
   PF02214.17   1 vklNVgGkrfetskstLsrfpdtlLgklaeteelddydeeeneyffDRspkaFetiLnyyrtggklhr..peelclksfleElefygleelai 91 
                  +klNVgG++fets +tL+  ++ +++ l++ +  + +++ ++++f+DR+pkaFe+iL ++rt+g l     +   ++ + +E efyg+++ ++
  MMETSP0890-20130614|24252_1  71 IKLNVGGRIFETSAETLR-DKSEFFNGLLSGR-WELKQDINGAIFLDRDPKAFEHILRWLRTDGLLDGanISAFLADVICQESEFYGINNFSV 161
                  79****************.7777888899877.9999999**********************9777650045667899**********98765 PP

>> PF03091.10  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.7e-06     0.026      60      86 ..      49      75 ..      36      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.7e-06
                 GGGHHHHHHHHHHHSSSSS--EEEEEE CS
   PF03091.10 60 eekleellekvkelhpYevpeiialpi 86
                 + k ++l ++++++ +Y+vp+ii+l++
  MMETSP0890-20130614|24252_1 49 AAKRAKLDNEIRKMEKYSVPNIIKLNV 75
                 45678999*****************98 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   3.2e-05      0.14      50     112 ..       2      64 ..       1      67 [. 0.95

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.2e-05
    PF07926.7  50 elikhaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselek 112
                  e++  ++ i  L k k el+  ++e++e + +  + ++e++++e++   ++++L++e++++ek
  MMETSP0890-20130614|24252_1   2 EVVSASTFIDDLCKKKLELDGFKSELDEREMKCSEREREIDDAEANTAAKRAKLDNEIRKMEK 64 
                  788999999**************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       533  (0.0389848); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 611.24
//
Query:       MMETSP0890-20130614|24260_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       140  (0.0102399); expected 273.4 (0.02)
Passed bias filter:                      132  (0.00965477); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.33s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 227.02
//
Query:       MMETSP0890-20130614|24273_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-20   72.5   0.1      4e-20   71.8   0.1    1.3  1  PF10186.4 UV radiation resistance protein and autophagy-related subunit 14


Domain annotation for each model (and alignments):
>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.1   2.9e-24     4e-20       1     298 [.      21     374 ..      21     376 .. 0.88

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 2.9e-24
    PF10186.4   1 rCpiCe.asrrpflCatCirnrLlelrlrlanlkaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asaqlekrraeqlaklqeeikrtksklnslesltaekRsqlcrelaklfplrrvsekrkseessstysIggtplvdlrdlns....lpaetisasLtyiaqLlnllshyLsvrLPaeitlpefcsdypqysp..............................................................lidkslpklskedpeteaeflegvslLnanvlwLcrtqgldlplldsyetlcnllkllssll 298
                  +C+iC  +  + ++C  C+ ++  +lrl+l +  +   +l+ ++  a e a++e ++a++++k e ++ +e+++ i kr+++ + +i ++r ++ e++++l++  + l+  saql +   ++l + q+++       n+ +++++ +  q++ el +lfp++r s  + ++   +  +I g+pl++  +       +p ++  ++L+ +aqL+  ++++L++ LP+ + +     +                                                                    +   + p       e+ ++f+ +++l   n+ +Lc + g+d ++l + e++ + l+ l+++ 
  MMETSP0890-20130614|24273_1  21 SCSICRsSITKLLICGECASKQVAPLRLKLERASNMMLELQARCRTAYE-AKKEPHEAWELWK-ECEALSEKLDVITKRVHRERLAIAKRRVQVLERRRKLEKAEQALSiQSAQLATLGRAILGDTQDKSALFFVPCNESNNVKMDSLWQKVSELFELFPIKRLSAPERGSL-RGIMTIVGLPLPNVGTSQVlttsVPRAVCCSALAAVAQLVYSVASVLGLGLPHPLAPRLGLDNAA---AvygahsasisdisaissttstprsragallggimavttgrdernrrlssspgsstrngptryVLAPPSP------GESDEQFAIALNLVQNNITHLCVKAGVDPANLWPAEAVLLNLCELHKTA 374
                  6*****66677789**********************************9.5554666666665.6778899**************************************999999999999999999999999999999**********************99988888886.88889*******99876544455*******************************99885555544...14444678999***********************************999999988877766543334444......899*****************************99999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:01.04
# Mc/sec: 1080.66
//
Query:       MMETSP0890-20130614|24287_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-08   33.6   0.3    5.7e-08   32.4   0.2    1.6  1  PF04564.10 U-box domain
    1.9e-05   24.0   0.0    4.7e-05   22.7   0.0    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
      7e-05   22.1   0.9    0.00042   19.6   0.4    2.2  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.041   13.5   0.6      0.097   12.3   0.4    1.6  1  PF11414.3  Adenomatous polyposis coli tumour suppressor protein
      0.043   13.5   0.1        0.1   12.3   0.0    1.6  1  PF01099.12 Uteroglobin family


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.2   2.1e-11   5.7e-08       2      46 ..      92     138 ..      91     149 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.1e-11
                  -GGGB-TTT-SB-SSEEE-TTT..-EEEHHHHHHHHTT.SSB-TTT- CS
   PF04564.10   2 PdefldpitlelmkdPvilPsg..itvDrstiekhllsrdktdPftr 46 
                  P ef++pit+elm +P+ l     +t++r ++ek+l++  + dP+t+
  MMETSP0890-20130614|24287_1  92 PSEFVCPITRELMEEPITLFTEihQTYERDALEKFLHQYPCRDPITN 138
                  89***************99887689********************95 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.7e-08   4.7e-05       7      45 ..      91     128 ..      85     136 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.7e-08
                  XXXX-B-TTT-S.-SS....EEEES..---EEEHHHHHHHHH CS
    PF13445.1   7 fhsifaCpiske.qsteqnpPvvLp..CGhvisrealeklak 45 
                    s f+Cpi++e + +    P++L      +++r+alek++ 
  MMETSP0890-20130614|24287_1  91 PPSEFVCPITRElMEE----PITLFteIHQTYERDALEKFLH 128
                  579***********66....9975525789*********987 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.28   7.6e+02       6      19 ..      55      68 ..      52      74 .. 0.78
   2 !   19.6   0.4   1.5e-07   0.00042      11      48 ..      94     132 ..      89     138 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.28
                 XXXXXX-B-TTT-S CS
    PF11789.3  6 eeerislkCpltlk 19
                 ++e ++++C ++l 
  MMETSP0890-20130614|24287_1 55 DRELFEKVCKISLL 68
                 57889999**9975 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.5e-07
                  X-B-TTT-SB-SSEEEES----.EEEHHHHHHHHTTT-- CS
    PF11789.3  11 slkCpltlkpfkePvtskkCnH.vFEkeaIlkmlkrkkk 48 
                  + +Cp+t++ ++eP+t  +  H ++E++a++k+l++  +
  MMETSP0890-20130614|24287_1  94 EFVCPITRELMEEPITLFTEIHqTYERDALEKFLHQYPC 132
                  678*************87554439**********77655 PP

>> PF11414.3  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   3.5e-05     0.097       6      27 ..      34      55 ..      30      58 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.5e-05
    PF11414.3  6 lkrlkeLererdlLLqgLekle 27
                  k+l+eL rer++LL++    +
  MMETSP0890-20130614|24287_1 34 KKQLQELQREREFLLADTKFAD 55
                 69*************9976655 PP

>> PF01099.12  Uteroglobin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.6e-05       0.1       4      41 ..       2      39 ..       1      42 [. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHH---HHHHHHHHHTT---HHHHHHHHHHHH CS
   PF01099.12  4 ldkvveklldgseeeYkasLkkynadpeaeeaveelKk 41
                 +++++++ l+gs e + a+L + n  +++++a+++l +
  MMETSP0890-20130614|24287_1  2 VADEIKAALNGSAELFSAKLVEHNFANDTVDAKKQLQE 39
                 7899*******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|24280_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-28   97.6  19.7    5.8e-26   90.9  10.0    2.8  2  PF07690.11 Major Facilitator Superfamily
    3.3e-14   52.1   2.2    1.8e-13   49.7   0.0    2.7  2  PF00083.19 Sugar (and other) transporter
     0.0015   16.6   0.1     0.0028   15.7   0.1    1.4  1  PF05977.8  Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9  10.0   1.3e-29   5.8e-26       2     299 ..      74     536 ..      73     568 .. 0.75
   2 !    8.3   1.0   0.00017      0.78      85     172 ..     537     637 ..     527     702 .. 0.78

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 1.3e-29
   PF07690.11   2 llaaflaalarsilgpalplalaedlgispse....igwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslg....WravFlilailsllaavlvllllprepperkrkspaeel...............................................................................................................................rkepaplvpawklllkppvlw..illialllf....ffvfsg....lltllplylqevlglspglllaglllgllaligaigalllgrls.drlgrrrrlllallllllaalglallaft.............................s 299
                  +l+a +  la+++++p++   +  +lgi p+       +l+++y+lg  ++s  +Grlsd++ r++ l+l+ +++al++++l  ++++w + ++ r++ G++  +l+p+  a++ + ++ e+r+r ++ll++++s+G +lgp +gg+l+  ++     + ++  ++ail +++a++++ll+p++ p+     +   l                                                                                                                                k++a++++  +++ ++  ++  ++l+al++f    +    +    ll++ p   ++   ++     +gl++g+++l++++ ++++   +  ++   +  + ++l+++++a++l ll +                              +
  MMETSP0890-20130614|24280_1  74 VLIASCELLAFNLILPFVG-DMVLHLGIEPQHegeaSALLTGAYGLGLTLSSEMWGRLSDKWDRKKALFLSCVCSALSIFFLGATTNFW-VAIAIRFIGGIC-NGLLPILKAMLNERTTAENRTRCFSLLQISSSVGGVLGPTIGGALVgGLFPdtrpFFLPCTVCAILQFFLALVGVLLIPQRSPDYIVAHDMHLLeahfdlqvpptlvqlsgedtvkhdesaaisllsnqgegkkaavvenniqkvqtreeiskeeeensrqqllapvhhsyppilsqenllhdttmeiknlqdvcffpfpnnndtnvtntgeekiitkqnlEKAKAKVSESNREIGRKA-FYvaAILCALASFldalA----TisqaLLMTAPRS-NSGAEFT--DEASGLIFGASGLLFLFYMIFTFPHLeAKYHLITLFYRSMLFIAICAIILPLLVVKpsrsnswvvsqgpptttstnidhslpqseN 536
                  57889999***********.9******8888777767778888***********************************55555347777.************.6*********************************************55555765555555666666666677777777555555555555555577777777777777777777788888888888888889999999999999999999999999999999*********************************************99888888877776555555555333333333.222223333333333333....1445699999996.9999999..4777777888888888876666555559***9*******************99999776555555555555554444444444322 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00017
   PF07690.11  85 lwalllvlrvlqGlgagalfpagaaliadwfpkeer..gralgllsagfslGailgpllggllasslg...........WravFlilailsllaavlvlll 172
                  ++ l++++  ++  +++ ++ ag++li +   + +   g  +g+++a  s++ +++p ++g+l ++++              +F++++++++++ + + ++
  MMETSP0890-20130614|24280_1 537 SSLLFIIFISIMNSASATALIAGNVLIQEAIDHGRLpcGASNGFAQALDSFARLVAPFFSGFLFDLGNsfitktnksygAVCPFYLATFMAFFLHLAGRVY 637
                  44479999999999999****************887445777**********************9888999998887554444888888888876644444 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   3.9e-17   1.8e-13      48     207 ..     109     269 ..      50     349 .. 0.90
   2 ?    0.9   0.4     0.026   1.2e+02     415     441 ..     452     478 ..     405     513 .. 0.63

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 3.9e-17
   PF00083.19  48 sglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglgl.nktsn.adgwrillglqlvpalllllll.lflp.eSprylvlkgkle.eA 207
                  s l+++++ +g + +s + g l+d+++Rkk+l  ++v+++ ++++ +a++   ++wv i+ R+i G++ Gl  +l +m ++E +++++r ++ sl q + +vG +++  ig +l +     +  + +++ +++++  +l+l++ l++p  Sp y v ++ +  eA
  MMETSP0890-20130614|24280_1 109 SALLTGAYGLGLTLSSEMWGRLSDKWDRKKALFLSCVCSALSIFFLGATT---NFWVAIAIRFIGGICNGLLPILKAM-LNERTTAENRTRCFSLLQISSSVGGVLGPTIGGALvGGLFPdTRPFFLPCTVCAILQFFLALVGvLLIPqRSPDYIVAHDMHLlEA 269
                  679999********************************************...*******************999998.58999*************************99999744444477888888888888877766552555526999999988876666 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.026
   PF00083.19 415 gyvflvfagllvlfilfvfffvpetkg 441
                    ++l+f +  +lf+++++f++p++  
  MMETSP0890-20130614|24280_1 452 EASGLIFGASGLLFLFYMIFTFPHLEA 478
                  455666666666666666666665544 PP

>> PF05977.8  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.1e-07    0.0028      48     165 ..     110     221 ..      95     295 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.1e-07
    PF05977.8  48 alvqaaatLPifllsllaGvlaDnldrRkvllvvqlllllasvlltvlaalgllspwlllaltfllgiGaalnapaWqasvgelvkrddvpaAvaLnsvgvNiaRsvGPAlgGvlvaa 165
                  al+  a  L + l s + G l+D++dr+k l+   +       +l+++     ++ w+ +a+ f+ gi   l  p  +a+++e  ++++     +L  ++  +   +GP +gG+lv  
  MMETSP0890-20130614|24280_1 110 ALLTGAYGLGLTLSSEMWGRLSDKWDRKKALFLSCV-----CSALSIFFLGATTNFWVAIAIRFIGGICNGL-LPILKAMLNERTTAENRTRCFSLLQISSSVGGVLGPTIGGALVGG 221
                  666667777777777778888888888888765433.....3334444444556678888888888888887.478888888888888888888888888888888888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       722  (0.0528087); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.34u 0.41s 00:00:01.75 Elapsed: 00:00:00.97
# Mc/sec: 1944.26
//
Query:       MMETSP0890-20130614|24315_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       594  (0.0434465); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 1205.91
//
Query:       MMETSP0890-20130614|24310_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.7e-134  448.3   0.5   3.2e-134  448.0   0.4    1.1  1  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.0   0.4  2.4e-138  3.2e-134       1     486 [.      44     552 ..      44     554 .. 0.95

  Alignments for each domain:
  == domain 1    score: 448.0 bits;  conditional E-value: 2.4e-138
   PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdk..reellkvartslnsklssresellsklvvdAvkiieeea..eldvgnigvikieggsledselieGvvldkgylsp...dmpkrl.enpkillldcsleteke.tktkvvlkdaeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrleslee.ed.lGkakkveeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalk.....deg......vvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahkkge.......nlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiika 486
                  +a+++++tLGP+G++k+l++   k++i+ndgati+k l++ hp+ak+l+e+++sqd evGDGtt++v+L +e+l++++ li++g+hpt ii+g+++a+  alk L++i   ++ d+  r+ l+ +a+t+lnskl+ +++ l++ +vvdAv+++e+e+   ld+ ++gv+k++ggs++ds +++Gv+++k++ ++   +m+k +  +++ lll+ +le ++e  +++++++d+++++k+++ae++++ ++l+++v+ g+++++++  i+d+a +++a++g+++  rv  +dl+r+ak+tg+ + ++l +l++ +  lG+++++ee+++g +++ +++  ++ ++k+ati+lrg +e++++e  r+i+dal ++k+a +     +        vv GGGa+e++lsk Lr++a s+ gk+ql++ +fakAle ip++La+N+g+d+++vl+ l+++h+k         ++g+d+++  i+d ++a i++p++ k +al +a+e+a  +L++d+ +++
  MMETSP0890-20130614|24310_1  44 VAEAIRSTLGPRGMDKLLFDGQ-KVTISNDGATIMKLLDIVHPAAKVLSEISTSQDAEVGDGTTSVVLLGSEILQQVKPLIEDGLHPTIIIKGIRKAATYALKRLSEI--CVEPDIerRKRLAILASTALNSKLIANYKSLFAPMVVDAVLAVENETtgYLDLQMVGVKKVPGGSVSDSFFVQGVAFKKTFSYAgfeQMTKLFqGDVQLLLLNIELELKSEkDNAEIQITDPDDYQKIVDAEWTIIYEKLDACVQCGAHVILSKLPIGDLATQYFADRGLFCAGRVPEDDLDRVAKATGGVVQTSLLDLSQrTNvLGHCGHFEEKQLGGERYNVFT--DCPKAKTATIVLRGGSEQFIEESHRSIHDALMIAKRAAEvgiknH-NdavvgaVVGGGGAIEMALSKSLRDQALSIAGKDQLILLAFAKALEIIPRQLATNSGFDSTDVLNALRQKHAKASttgplqtWFGVDCSQPGIVDTLQAEIWEPAANKANALAAAAEAAVVVLSVDETVTN 552
                  689****************655.*************************************************************************************..666664469*******************************99988889************************************88777665599**************9989***************************************************************************************86668*********************..*************************************99555541.04455559*************************************************************99655567899***********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:00.76
# Mc/sec: 1891.86
//
Query:       MMETSP0890-20130614|24327_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-06   27.2   0.0    6.1e-06   26.5   0.0    1.3  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
     0.0077   16.4   0.0      0.013   15.6   0.0    1.3  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     9e-10   6.1e-06       2      99 ..      87     175 ..      86     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 9e-10
    PF13640.1   2 qlnrygpggfls.pHvDnse....sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks.drslHrvtpvgaqgrrlaitgwf 99 
                  +++ry+p g+++  H+ +      ++sr l +++ylnd     + G +e+         + +++     p++g +++++  +++ Hr  p   ++++ + tgwf
  MMETSP0890-20130614|24327_1  87 NIQRYPPSGGYKtFHTERTGagepEGSRHLVFMTYLNDVT---DQGGTEFIH------QNITIQ-----PVKGLTLIWPAdWTFTHRGVPS-PTQEKTIATGWF 175
                  6899966666555****966*****************999...899999883......467788.....****99999999**********.999********9 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-06     0.013       5      98 ..      86     176 ..      83     177 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
                  EEEEEEES--E-EEEEEEEESS.......SCEEEEEEE....T--EEEEEE-EESCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   5 lrvnrYpppekglglgpHtDne.......nriltillq....ddggglqfrkedkwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                   +++rYp p  g+   +Ht          +r l+++ +    +d gg++f ++     ++++pv +l++ +           + +++Hr++p  ++e+++++ +++
  MMETSP0890-20130614|24327_1  86 TNIQRYP-P-SGGYKTFHTERTgagepegSRHLVFMTYlndvTDQGGTEFIHQ----NITIQPVkGLTLIWPA---------DWTFTHRGVPSPTQEKTIATGWFN 176
                  6799***.3.5666679***99******9888888888899**********88....5777777678888887.........689*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 595.76
//
Query:       MMETSP0890-20130614|24336_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-17   62.3   0.1    3.3e-17   61.7   0.0    1.3  1  PF00355.21 Rieske [2Fe-2S] domain
    8.4e-12   45.0   0.5    1.3e-11   44.4   0.3    1.3  1  PF02921.9  Ubiquinol cytochrome reductase transmembrane region


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   4.9e-21   3.3e-17       4      95 ..     114     200 ..     111     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 4.9e-21
                  EEEEGGGSCCTCEEEEEEGGSEEEEEE.CTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS-SCEEBEEE CS
   PF00355.21   4 evareeeipepgdgkttklgedlvvvr.dkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatkvlklypvke 95 
                  +++++ee++e++++    l +++      +++++ ++ +iCtH+gc++  + ag+ +  +++CpcHg++yd++ g+++kgpa+  l+l+ + +
  MMETSP0890-20130614|24336_1 114 RHRTSEEVAEAEGVSLDALRDPQSDADrVQEKDWLVVMGICTHLGCVPIAN-AGEYN--GWFCPCHGSHYDVS-GRIRKGPAP--LNLEVPPY 200
                  66788999996666666666666666669999*****************99.34444..5*************.*********..66665544 PP

>> PF02921.9  Ubiquinol cytochrome reductase transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.3   1.9e-15   1.3e-11      12      64 .]      30      82 ..      17      82 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.9e-15
                 TTB-GCTTS-SHCCCCHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHCTS--HH CS
    PF02921.9 12 dYrrksktsraretddkrraFaYlmvgaagvlsaaaAKstVqtfvssmSaSAD 64
                  Y +k+ +++++ ++ ++r+F+Yl++ga  +++a+a + +  +f+ sm+aS D
  MMETSP0890-20130614|24336_1 30 YYWKKDRIEKSNSGSAENRGFTYLVMGANKFIYASAVRIAAIKFIASMAASKD 82
                 57777799*******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:01.00
# Mc/sec: 505.63
//
Query:       MMETSP0890-20130614|24352_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-44  148.9  19.1    8.6e-07   29.3   0.1    6.3  6  PF08238.7  Sel1 repeat
  ------ inclusion threshold ------
      0.018   14.5   2.2        0.2   11.2   0.1    3.2  3  PF13414.1  TPR repeat
      0.033   14.0   6.3         63    3.7   0.0    5.5  5  PF07719.12 Tetratricopeptide repeat
       0.41   10.4   2.3         21    4.9   0.1    3.3  3  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2   4.9e-10   1.7e-06       8      39 .]      57      86 ..      54      86 .. 0.92
   2 !   27.1   0.1   1.2e-09   4.2e-06       2      39 .]      88     122 ..      87     122 .. 0.90
   3 !   23.1   0.1   2.1e-08   7.3e-05       2      36 ..     124     156 ..     123     158 .. 0.82
   4 !   29.3   0.1   2.5e-10   8.6e-07       1      38 [.     160     194 ..     160     195 .. 0.87
   5 !   25.9   0.0   2.9e-09   9.9e-06       3      39 .]     198     231 ..     196     231 .. 0.94
   6 !   25.4   0.0   4.1e-09   1.4e-05       2      34 ..     233     262 ..     232     267 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 4.9e-10
    PF08238.7  8 GlyymylnGlgGvpkdpekAleWyekAAeqGh 39
                 +  ++yl+G gGv ++ ++A+++++kAAe+Gh
  MMETSP0890-20130614|24352_1 57 A--LLYLYGKGGVSQNSAQAVKLFRKAAERGH 86
                 5..678999999*******************9 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.2e-09
    PF08238.7   2 eAqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                  ++q +LG   ++ +G  Gv +d+  A+ W+ +AA+ Gh
  MMETSP0890-20130614|24352_1  88 PSQVALG--VLLRHGN-GVARDDYAAYAWLSRAAREGH 122
                  689****..5559**8.9***9999************9 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 2.1e-08
    PF08238.7   2 eAqynLGlyymylnGlgG.vpkdpekAleWyekAAe 36 
                  +++  LG   myl+G  G  + d+e+A++W+e +A+
  MMETSP0890-20130614|24352_1 124 DGAWLLG--VMYLEGF-GdNTIDYEQARKWLEFSAR 156
                  56789**..8889**9.625559*********9996 PP

  == domain 4    score: 29.3 bits;  conditional E-value: 2.5e-10
    PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38 
                  ++A+  LG+++  ++Gl G + +++ A +Wy+kA ++G
  MMETSP0890-20130614|24352_1 160 PDAMHWLGVME--EYGL-GRDTNYSSAARWYKKATDLG 194
                  79******888..7776.56669************999 PP

  == domain 5    score: 25.9 bits;  conditional E-value: 2.9e-09
    PF08238.7   3 AqynLGlyymylnGlgGvpkdpekAleWyekAAeqGh 39 
                  A + LG  +m+ +G+ G+ +d ++A  ++ +AA++G+
  MMETSP0890-20130614|24352_1 198 APFHLG--LMHAYGR-GTNQDFQRAAILFNQAASLGN 231
                  7899**..999***9.9*******************8 PP

  == domain 6    score: 25.4 bits;  conditional E-value: 4.1e-09
    PF08238.7   2 eAqynLGlyymylnGlgGvpkdpekAleWyekA 34 
                   A+++ +   m+l+G+ Gvp d+++A+ W++ A
  MMETSP0890-20130614|24352_1 233 GAMFYIA--TMHLYGQ-GVPVDYDRARTWFQSA 262
                  59*****..6779**9.8************988 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.12   4.2e+02      18      31 ..      70      83 ..      48     126 .. 0.69
   2 ?   11.2   0.1   5.7e-05       0.2      18      67 ..     179     229 ..     172     231 .. 0.90
   3 ?    4.8   0.0    0.0056        19      16      64 ..     213     262 ..     211     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.12
    PF13414.1 18 dydeAieayekAle 31
                 + ++A+++++kA e
  MMETSP0890-20130614|24352_1 70 NSAQAVKLFRKAAE 83
                 44566666666654 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 5.7e-05
    PF13414.1  18 dydeAieayekAleldpnnaelyynlAlaylklg..kdyeeAledyekAlel 67 
                  +y  A + y+kA++l  ++a  +++l +ay + g  +d+++A+  +++A +l
  MMETSP0890-20130614|24352_1 179 NYSSAARWYKKATDLGQSTAPFHLGLMHAYGR-GtnQDFQRAAILFNQAASL 229
                  899****************************8.65579*****999999765 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0056
    PF13414.1  16 egdydeAieayekAleldpnnaelyynlAlaylklgk....dyeeAledyekA 64 
                  ++d++ A  ++++A +l   na +++ +A  +l  g+    dy++A++ ++ A
  MMETSP0890-20130614|24352_1 213 NQDFQRAAILFNQAASLG--NAGAMFYIATMHLY-GQgvpvDYDRARTWFQSA 262
                  7899*************9..79999999999998.876777899999988887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.036   1.2e+02      16      29 ..      70      83 ..      68      84 .. 0.85
   2 ?   -0.2   0.1      0.32   1.1e+03      16      25 ..     143     152 ..     143     152 .. 0.87
   3 ?    3.3   0.0     0.024        82      16      30 ..     179     193 ..     175     195 .. 0.89
   4 ?    3.7   0.0     0.018        63      15      30 ..     214     229 ..     212     231 .. 0.89
   5 ?    1.4   0.0       0.1   3.4e+02      16      27 ..     251     262 ..     251     266 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.036
                 -HHHHHHHHHHHHH CS
   PF07719.12 16 dyeeAleafekAle 29
                 + ++A+++f+kA e
  MMETSP0890-20130614|24352_1 70 NSAQAVKLFRKAAE 83
                 6689********87 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.32
                  -HHHHHHHHH CS
   PF07719.12  16 dyeeAleafe 25 
                  dye+A++++e
  MMETSP0890-20130614|24352_1 143 DYEQARKWLE 152
                  79****9986 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.024
                  -HHHHHHHHHHHHHH CS
   PF07719.12  16 dyeeAleafekAlel 30 
                  +y  A+++++kA  l
  MMETSP0890-20130614|24352_1 179 NYSSAARWYKKATDL 193
                  899*********876 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.018
                  T-HHHHHHHHHHHHHH CS
   PF07719.12  15 gdyeeAleafekAlel 30 
                  +d+++A+ +f++A +l
  MMETSP0890-20130614|24352_1 214 QDFQRAAILFNQAASL 229
                  79***********987 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.1
                  -HHHHHHHHHHH CS
   PF07719.12  16 dyeeAleafekA 27 
                  dy++A+ +f+ A
  MMETSP0890-20130614|24352_1 251 DYDRARTWFQSA 262
                  8********977 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.34   1.1e+03      21      33 ..      71      83 ..      65      86 .. 0.62
   2 ?    4.9   0.1     0.006        21      18      33 ..     177     192 ..     170     195 .. 0.85
   3 ?    2.9   0.1     0.026        88       3      31 ..     217     262 ..     215     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHH CS
   PF04212.13 21 yeeAlelYkeAle 33
                  ++A++l ++A+e
  MMETSP0890-20130614|24352_1 71 SAQAVKLFRKAAE 83
                 5556666665554 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.006
                  TT-HHHHHHHHHHHHH CS
   PF04212.13  18 agkyeeAlelYkeAle 33 
                    +y+ A ++Yk+A +
  MMETSP0890-20130614|24352_1 177 DTNYSSAARWYKKATD 192
                  569**********976 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.026
                  HHHHHHHHHHHHHHHTT.................-HHHHHHHHHHH CS
   PF04212.13   3 skAlelikkAveaDeag.................kyeeAlelYkeA 31 
                  ++A  l+++A   ++ag                 +y+ A ++ ++A
  MMETSP0890-20130614|24352_1 217 QRAAILFNQAASLGNAGamfyiatmhlygqgvpvDYDRARTWFQSA 262
                  7899999********9999999999999999999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 1013.59
//
Query:       MMETSP0890-20130614|24358_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.5  11.7    0.00046   20.0   8.1    1.9  1  PF12906.2  RING-variant domain
     0.0066   15.8   0.1      0.015   14.6   0.1    1.7  1  PF02037.22 SAP domain
  ------ inclusion threshold ------
      0.087   12.3   1.1       0.14   11.6   0.1    1.8  2  PF10938.3  YfdX protein
        9.7    5.8  11.5         21    4.7   7.9    1.6  1  PF00628.24 PHD-finger


Domain annotation for each model (and alignments):
>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   8.1   1.4e-07   0.00046       1      47 []     119     169 ..     119     169 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.4e-07
                  ETTTTEE-----..---------T.TS--HHHHHHHHHH....HT-SB-S-- CS
    PF12906.2   1 CriCleeeeeseplirpCkCkGsl.klvHesCleeWlke....saktkCelC 47 
                  C iC +++++ +pl+r C C+G + ++vH sCl +  ++    s+ +kC+lC
  MMETSP0890-20130614|24358_1 119 CYICWDHDDK-KPLKRSCACRGFCtGYVHTSCLIKAAEKaqdmSRWSKCKLC 169
                  9****99666.56*********7637*******999999666666666***9 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.4e-06     0.015       2      31 ..       7      38 ..       6      42 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.4e-06
                 TT--HHHHHHHHHHTT------..HHHHHHHH CS
   PF02037.22  2 skltVaeLKaeLkkrGLptsGk..KaeLieRL 31
                 sk++V++LKa   + GL+t G   KaeL e  
  MMETSP0890-20130614|24358_1  7 SKMSVKQLKAVIHRAGLSTEGIieKAELRELA 38
                 9***************************8865 PP

>> PF10938.3  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.69   2.3e+03      61      82 ..      74      96 ..      34     111 .. 0.49
   2 ?   11.6   0.1   4.2e-05      0.14     120     143 ..     240     263 ..     235     271 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.69
    PF10938.3 61 aevtvidd.faatpekkaaikea 82
                  e+t ++   ++t+ek +a++ a
  MMETSP0890-20130614|24358_1 74 DEITEEKNdCTTTSEKHKALELA 96
                 33333333355555555555544 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.2e-05
    PF10938.3 120 avkqAaelldegkyyeAkaaLkkA 143
                  +++qA+elld++k++eA a L+++
  MMETSP0890-20130614|24358_1 240 QIEQAQELLDNNKPKEAIALLEEI 263
                  589****************99987 PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.9    0.0061        21       2      49 ..     119     170 ..     118     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0061
                  BTTTTC...TCTTS-EEEBSS.SSSEEETTTSSS-SSHHSHHSTTB-.SCCCH CS
   PF00628.24   2 CkiCge...sdeegelvlCdg.CkewfHlkClglkleseekpegewl.CeeCk 49 
                  C iC +   ++  ++   C g C   +H++Cl    e++++++ +w  C+ C+
  MMETSP0890-20130614|24358_1 119 CYICWDhddKKPLKRSCACRGfCTGYVHTSCLIKAAEKAQDMS-RWSkCKLCD 170
                  9999996544557888999988**********99999887765.784499997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1204.40
//
Query:       MMETSP0890-20130614|24364_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 420.90
//
Query:       MMETSP0890-20130614|24388_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.5   0.3       0.19   11.5   0.2    2.9  2  PF12557.3 Cob(I)alamin adenosyltransferase N terminal


Domain annotation for each model (and alignments):
>> PF12557.3  Cob(I)alamin adenosyltransferase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.4e-05      0.19      11      21 ..      12      22 ..      11      24 .. 0.91
   2 ?   -0.5   1.0     0.081   1.1e+03       9      13 ..      41      45 ..      31      49 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
    PF12557.3 11 aRMqrkKevvD 21
                 aR +r+K+++D
  MMETSP0890-20130614|24388_1 12 ARAARVKAAQD 22
                 8********** PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.081
    PF12557.3  9 HkaRM 13
                 +++R+
  MMETSP0890-20130614|24388_1 41 YAERQ 45
                 44554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1255  (0.0917934); expected 273.4 (0.02)
Passed bias filter:                      824  (0.0602692); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:01.09
# Mc/sec: 120.92
//
Query:       MMETSP0890-20130614|24402_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   17.7   0.0     0.0026   16.9   0.0    1.3  1  PF00337.17 Galactoside-binding lectin


Domain annotation for each model (and alignments):
>> PF00337.17  Galactoside-binding lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-07    0.0026      12      73 ..     233     295 ..     227     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-07
                  TT-EEEEEEEEBTTTSBEEEEEEEE.TTTTTEEEEEEEEECCT.ECEEEEEEEBTTCB-SEEE CS
   PF00337.17  12 agssitvvGtpkakasqfsvnLqggkdgeepdiiLHfnprfke.rpvivrNscyrgqWgeeer 73 
                  + ++++++ +++ +a ++++nL+ + +++ ++i+LH+n r  e  + +v+N + +++W +  +
  MMETSP0890-20130614|24402_1 233 THTTLVLQVSVDTDALRWALNLCPKLHDDAANILLHLNARRVErGGILVLNDKLDDNWNRDDK 295
                  5678888899999**********9999*************99988999**********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.96
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|24412_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0067   15.2   9.5     0.0067   15.2   6.6    1.5  2  PF04111.7  Autophagy protein Apg6
  ------ inclusion threshold ------
      0.054   13.7   0.2        0.1   12.9   0.1    1.5  1  PF04867.7  Protein of unknown function (DUF643)
      0.057   12.6   0.4       0.14   11.3   0.1    1.6  1  PF01220.14 Dehydroquinase class II
      0.073   12.3  12.5       0.13   11.5   8.7    1.4  1  PF07795.6  Protein of unknown function (DUF1635)
       0.19   10.7  20.5       0.16   11.0   4.4    2.2  2  PF13851.1  Growth-arrest specific micro-tubule binding
       0.26    8.9   8.2       0.33    8.6   5.7    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.76    9.6  21.9      0.019   14.8   7.2    2.2  2  PF06818.10 Fez1
        1.1    8.6   9.8        1.7    8.1   2.3    2.6  2  PF04048.9  Sec8 exocyst complex component specific domain
        1.3    8.1  20.9        1.7    7.7  14.5    1.2  1  PF00529.15 HlyD family secretion protein
        1.5    8.8   5.0        1.9    8.5   1.3    2.4  3  PF13776.1  Domain of unknown function (DUF4172)
        2.1    8.0   7.7        1.4    8.6   3.4    2.1  2  PF07889.7  Protein of unknown function (DUF1664)
        3.3    6.9  10.4        2.2    7.5   1.8    2.1  3  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
        4.9    6.8  14.5         20    4.8   9.3    2.3  1  PF04859.7  Plant protein of unknown function (DUF641)
        6.9    6.9  17.0         32    4.8   6.9    2.8  2  PF06156.8  Protein of unknown function (DUF972)
        7.5    6.4  10.3        3.3    7.6   1.2    2.8  3  PF01166.13 TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   6.6   7.4e-06    0.0067      63     145 ..      27     111 ..      14     120 .. 0.86
   2 ?    1.2   1.8      0.13   1.2e+02      58     123 ..      98     158 ..      79     177 .. 0.50

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.4e-06
                  .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04111.7  63 envealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylr..elnkfklkklelekelkslelqleys 145
                     ++l++e++e +  e  l+e+l+++++++ +l e+l++  ee+ek+ ++ + y +  e + ++lkkl  e +  s + q e +
  MMETSP0890-20130614|24412_1  27 ATCDRLEREINEAALAERILIEQLRQMRSTSSELREALRKSTEENEKIVANATAYAKllEEEVVNLKKLLAETQATSQKAQAESQ 111
                  467899******************************************99988876533777899************99998754 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.13
                  XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04111.7  58 qnkeeenvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnk 123
                   +++   +++ + e + Lk + +  + ele l+++  + +++l+   +e++kl e ++   ++ ++
  MMETSP0890-20130614|24412_1  98 ETQA--TSQKAQAESQLLKASLQTSEAELESLKRDLIRAKKALV---AERNKLRERDAGGSSNTTR 158
                  2222..23444555555666666666666666554444444443...4555555555555555555 PP

>> PF04867.7  Protein of unknown function (DUF643)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00011       0.1      13      85 ..      30     102 ..      24     124 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
    PF04867.7  13 kdlkkeinklyeteqltlkqkkqlysavkkiqeykiktGksveeivddiidpekefikdvlkdknlikkyknf 85 
                  ++l +ein   ++e++ ++q +q+ s+  +++e  +k+    e+iv +    +k +  +v+  k+l+   ++ 
  MMETSP0890-20130614|24412_1  30 DRLEREINEAALAERILIEQLRQMRSTSSELREALRKSTEENEKIVANATAYAKLLEEEVVNLKKLLAETQAT 102
                  68899********************************************999999999999998887766654 PP

>> PF01220.14  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00015      0.14      13      79 ..      15      83 ..       6      87 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
                 G-----TTT-----HHHHHHHHHHHHHT---EEEEEE-..S----HHHHHHHCHHHB---EE--GGCCC CS
   PF01220.14 13 lLgkrepeiYgsetlediekklkekaeelgveleflqs..nhEgelidaiheaaeevdaiiiNpaayth 79
                  +gkr+ +   + t +++e++++e+a +  + +e l++   + +el +a+++++ee + i+ N+ ay++
  MMETSP0890-20130614|24412_1 15 FFGKRQSRKSLKATCDRLEREINEAALAERILIEQLRQmrSTSSELREALRKSTEENEKIVANATAYAK 83
                 6899********************999999888765431256789**********************75 PP

>> PF07795.6  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   8.7   0.00014      0.13       2     116 ..      56     177 ..      55     196 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
    PF07795.6   2 tieelRqsLlyttleLeqvklvaneelrkrdeeviqLkdlLkktlkerDeakeklqkllldslllqqkk.............edeqvkpnssltesnsfsssdveesissselsvldplvenelkevd 116
                  t  elR+ L  +t e e++ ++a+   +  +eev +Lk+lL  t+     a+ +  +ll  + +lq  +             +   v  +++l+e ++ +ss++  s   ++  ++++  + + +++ 
  MMETSP0890-20130614|24412_1  56 TSSELREALRKSTEENEKIVANATAYAKLLEEEVVNLKKLLAETQATSQKAQAES-QLL--KASLQTSEaeleslkrdliraKKALVAERNKLRERDAGGSSNTTRSTRTTT--TVQKKRQ-RTEQIA 177
                  668***************************************9999888887654.455..334555555667777777775444444444677777777777777766655..4444333.334455 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.4   0.00017      0.16      38     107 ..      24      94 ..      18      95 .. 0.88
   2 ?    8.1   7.8    0.0014       1.2      20      86 ..      73     139 ..      71     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
    PF13851.1  38 elkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqy.ekdkqsLknlkaklkelekelknlkw 107
                  +lk++ ++ e++++e +   + l e+L+++++   eL+++l++  e++ +  +n++a +k le+e+ nlk+
  MMETSP0890-20130614|24412_1  24 SLKATCDRLEREINEAALAERILIEQLRQMRSTSSELREALRKStEENEKIVANATAYAKLLEEEVVNLKK 94 
                  689999999*******************************9876155566789999***********9985 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0014
    PF13851.1  20 ditknnLelIkslkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkq 86 
                  +i++n  ++ k l+ee+ +lkk  ++++   ++ ++e + lk+ L++ e+e e Lk++l  ++k  +
  MMETSP0890-20130614|24412_1  73 KIVANATAYAKLLEEEVVNLKKLLAETQATSQKAQAESQLLKASLQTSEAELESLKRDLIRAKKALV 139
                  688888888999**********************************************988877543 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.7   0.00036      0.33      71     185 ..      24     153 ..      11     188 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00036
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  71 dleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk..............veelrelssldeefkalraaeglklgfvaGvikre..klealerllwralrgnlyikqaeieevledpk 185
                   l+++ ++le e++e+   ++ L ++l+++ ++ ++lre+ ++  e++              +ee+ +l++l  e++a ++++  + +++  + +++   le+l+r l+ra ++ l  +  ++ e+     
  MMETSP0890-20130614|24412_1  24 SLKATCDRLEREINEAALAERILIEQLRQMRSTSSELREALRKSTEENekivanatayakllEEEVVNLKKLLAETQATSQKAQAESQLLKASLQTSeaELESLKRDLIRAKKA-LVAERNKLRERDAGGS 153
                  455666666666666666666666666666666666666554444433455555555555556666788888888888887777777766666554411567888888888877.5555555555554444 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   2.7      0.52   4.7e+02      72     111 ..      29      72 ..      12      86 .. 0.51
   2 ?   14.8   7.2   2.1e-05     0.019      31     102 ..      87     158 ..      80     190 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.52
   PF06818.10  72 eneLqrkkseael....lrekagrleaelaelrealasagtlke 111
                   + L+r+ +ea+l    l e++ ++    +elreal + ++++e
  MMETSP0890-20130614|24412_1  29 CDRLEREINEAALaeriLIEQLRQMRSTSSELREALRKSTEENE 72 
                  33333444433321111445555555555566665555433333 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.1e-05
   PF06818.10  31 seilsLraqlrearaelqeseeklqelkdalrtktleLevceneLqrkkseaellrekagrleaelaelrea 102
                   e++ L+  l e++a+ q+ +++ q lk++l+t ++eLe  + +L r k+     r+k+ + +a  ++   +
  MMETSP0890-20130614|24412_1  87 EEVVNLKKLLAETQATSQKAQAESQLLKASLQTSEAELESLKRDLIRAKKALVAERNKLRERDAGGSSNTTR 158
                  699******************************************999987777777777766544433333 PP

>> PF04048.9  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.8     0.084        76      50     100 ..      19      69 ..      16      97 .. 0.71
   2 ?    8.1   2.3    0.0019       1.7      76     111 ..     112     147 ..      80     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.084
    PF04048.9  50 kqiekaLqevvnehhqgfnssigsYskilssitesqekirelKesleeakk 100
                  +q  k+L+ + ++ + + n++  + + +++++ + +++++el+e+l+++++
  MMETSP0890-20130614|24412_1  19 RQSRKSLKATCDRLEREINEAALAERILIEQLRQMRSTSSELREALRKSTE 69 
                  566677777777777777777777777778888888888888888887765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0019
    PF04048.9  76 kilssitesqekirelKesleeakkklstrkkeLke 111
                   +  s++ s+ +++ lK++l  akk+l +++++L+e
  MMETSP0890-20130614|24412_1 112 LLKASLQTSEAELESLKRDLIRAKKALVAERNKLRE 147
                  456799**************************9987 PP

>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  14.5    0.0019       1.7      90     224 ..      35     183 ..      16     193 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0019
                  HHHHH..........HHHHHHHHHHHHTTEEE-S--...............-----BSS-B---------S-SEEEEEESSEEEEEEE-HHHHHHHHHHHH-----B----EE-EEEEE---.....-BES----EEESEEEE------EEEEE CS
   PF00529.15  90 earealaasqalaaskaeleaardnlasaeaalpasl..............gsikasqatlgalltnlqaqglaakaqldeaklqlaqtaaelarsirapaqgervqeesklrsvqvgeevs.....vgspllgvvpfedvevdanlketqlrl 224
                  e +ea +a++   +  ++l++ r   ++ ++al+ s                 ++++ ++l++ll+ +qa++++a+a  + +k++l+ ++ael+ + r+ +++ +++   ++r+  + ++++     ++s+ +++  +++++  ++++ t +r 
  MMETSP0890-20130614|24412_1  35 EINEAALAER---ILIEQLRQMRSTSSELREALRKSTeenekivanatayaKLLEEEVVNLKKLLAETQATSQKAQAESQLLKASLQTSEAELESLKRDLIRA-KKALV-AERNKLRERDAGgssntTRSTRTTTTVQKKRQRTEQIAPTSTRS 183
                  3333333333...444444444444444444444444444444433344446777777777777777999999999999999999999999999999999998.44443.33333333333336777777777777777777777766666665 PP

>> PF13776.1  Domain of unknown function (DUF4172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.8   7.3e+02      28      43 ..      42      57 ..      24      80 .. 0.52
   2 ?    3.3   0.5     0.087        80      12      61 ..      54     104 ..      47     107 .. 0.80
   3 ?    8.5   1.3    0.0021       1.9      18      74 ..      81     134 ..      73     137 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.8
    PF13776.1 28 kqgkLlGkleslgkde 43
                 +++ L+ +l+++ + +
  MMETSP0890-20130614|24412_1 42 AERILIEQLRQMRSTS 57
                 4444444444433322 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.087
    PF13776.1  12 twdseklepllrevrekqgkLlGkleslgkdekee.avldtllaevvkssa 61 
                  +  s++l++ lr+ +e++ k+++++++  k ++ee + l+ llae  ++s+
  MMETSP0890-20130614|24412_1  54 RSTSSELREALRKSTEENEKIVANATAYAKLLEEEvVNLKKLLAETQATSQ 104
                  556889999999999999999999988887776661568999999988885 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0021
    PF13776.1  18 lepllrevrekqgkLlGkleslgkdekeeavldtllaevvkssaIEgekLnaesVrS 74 
                   ++ll+e   + +kLl+++++++++ ++e   ++ll+  +++s+ E e L ++ +r+
  MMETSP0890-20130614|24412_1  81 YAKLLEEEVVNLKKLLAETQATSQKAQAE---SQLLKASLQTSEAELESLKRDLIRA 134
                  56677777778888888888766544444...45778899*************9995 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.2   1.8e+02      61     103 ..      20      62 ..      17      66 .. 0.82
   2 ?    8.6   3.4    0.0015       1.4      34     110 ..      53     129 ..      47     145 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.2
    PF07889.7  61 sakkhLsqridnlddkldeqkeiskeikeevteiredlsaike 103
                  +++k L +  d+l+++++e +   +   e++ ++r++ s+++e
  MMETSP0890-20130614|24412_1  20 QSRKSLKATCDRLEREINEAALAERILIEQLRQMRSTSSELRE 62 
                  5789999999999999999988888888999999998888776 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0015
    PF07889.7  34 mfvtkrnladAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkq 110
                  m  t  +l +A  + t++ ek+  + ++  k L +++ nl + l e++++s++ + e + ++ +l++ + +++slk+
  MMETSP0890-20130614|24412_1  53 MRSTSSELREALRKSTEENEKIVANATAYAKLLEEEVVNLKKLLAETQATSQKAQAESQLLKASLQTSEAELESLKR 129
                  7789999****************************************************************999985 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.8    0.0024       2.2     102     178 ..      19      95 ..      10     100 .. 0.93
   2 ?    6.3   3.8    0.0053       4.8     110     178 ..      69     137 ..      59     143 .. 0.86
   3 ?    2.9   1.1     0.061        56     110     146 ..     108     144 ..      96     176 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0024
    PF05791.6 102 kkdketlkeglekLqeeiqknqkevkqlleeLkafknklakdtksfksdvdeltsiLksqgadieklkkeieklqee 178
                   + ++ lk++ ++L+ ei +     + l+e+L ++++   +  +++ + ++e  +i +++ a  + l++e+ +l++ 
  MMETSP0890-20130614|24412_1  19 RQSRKSLKATCDRLEREINEAALAERILIEQLRQMRSTSSELREALRKSTEENEKIVANATAYAKLLEEEVVNLKKL 95 
                  577899****************************************************************9999876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0053
    PF05791.6 110 eglekLqeeiqknqkevkqlleeLkafknklakdtksfksdvdeltsiLksqgadieklkkeieklqee 178
                  e+ ek   +++++ k  ++ + +Lk++ ++ +  +++ +++++ l++ L++++a++e lk+++ + +++
  MMETSP0890-20130614|24412_1  69 EENEKIVANATAYAKLLEEEVVNLKKLLAETQATSQKAQAESQLLKASLQTSEAELESLKRDLIRAKKA 137
                  55567778888899999999999999999999999999999********************99887765 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.061
    PF05791.6 110 eglekLqeeiqknqkevkqlleeLkafknklakdtks 146
                  ++ + L+ + q+ + e ++l  +L + k++l+ + ++
  MMETSP0890-20130614|24412_1 108 AESQLLKASLQTSEAELESLKRDLIRAKKALVAERNK 144
                  3344455556666666666666666666665555555 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.3     0.022        20      46     122 ..      41     121 ..      33     158 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.022
    PF04859.7  46 aADkavvaeLkkLselkrlyrrkeakgsakdailaaeiqeqrsllktyeivvkkLeaelrakdsei....eelrekleeak 122
                   A ++++++L++++++ +  r+   k  ++++++ a++    +ll++  + +kkL ae++a  +++    + l+++l+ ++
  MMETSP0890-20130614|24412_1  41 LAERILIEQLRQMRSTSSELREALRKSTEENEKIVANATAYAKLLEEEVVNLKKLLAETQATSQKAqaesQLLKASLQTSE 121
                  5899********987777777777777777777777777777777777777777777666654444000044444444333 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.9     0.035        32      13      63 ..      46     107 ..      20     127 .. 0.61
   2 ?    1.1   6.1      0.49   4.5e+02      26      58 ..      91     125 ..      80     179 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.035
    PF06156.8  13 leeqleelleeleelkkelkelleenaelkleneklrerleelee...........eekkke 63 
                  l eql+++ ++ +el++ l + +een+++  + ++  + lee+             +++k++
  MMETSP0890-20130614|24412_1  46 LIEQLRQMRSTSSELREALRKSTEENEKIVANATAYAKLLEEEVVnlkkllaetqaTSQKAQ 107
                  45678888888888888888888888877666666655555544344434432211111111 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.49
    PF06156.8  26 elkkelkelleenaelkleneklrerleelee..e 58 
                  +lkk l+e+    ++ + e + l+  l+++e+  e
  MMETSP0890-20130614|24412_1  91 NLKKLLAETQATSQKAQAESQLLKASLQTSEAelE 125
                  44444444444444444444444444444433221 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.1e+03      39      53 ..      40      54 ..      23      58 .. 0.49
   2 ?    3.7   0.4     0.057        52      19      43 ..      53      77 ..      44      82 .. 0.82
   3 ?    7.6   1.2    0.0036       3.3      14      45 ..      87     118 ..      80     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.3
   PF01166.13 39 llkslaspeqleqlq 53
                  l + +  eql q+ 
  MMETSP0890-20130614|24412_1 40 ALAERILIEQLRQMR 54
                 344444556666555 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.057
   PF01166.13 19 LkeqIkeLeeknsklerEnellksl 43
                 ++ + +eL e ++k+ +Ene   ++
  MMETSP0890-20130614|24412_1 53 MRSTSSELREALRKSTEENEKIVAN 77
                 577889*************976655 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0036
   PF01166.13  14 eEVevLkeqIkeLeeknsklerEnellkslas 45 
                  eEV  Lk+  +e ++  +k + E +llk+ ++
  MMETSP0890-20130614|24412_1  87 EEVVNLKKLLAETQATSQKAQAESQLLKASLQ 118
                  9***************************8654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2149  (0.157183); expected 273.4 (0.02)
Passed bias filter:                      708  (0.0517847); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        36  (0.00263312); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.03u 0.42s 00:00:01.45 Elapsed: 00:00:00.91
# Mc/sec: 529.31
//
Query:       MMETSP0890-20130614|24415_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-16   59.3   5.6      9e-10   38.3   0.1    4.0  4  PF13857.1  Ankyrin repeats (many copies)
    2.8e-16   59.5   3.7    2.7e-09   37.1   0.6    2.9  2  PF12796.2  Ankyrin repeats (3 copies)
    1.2e-15   57.4   5.0    7.9e-05   22.9   0.2    3.4  3  PF13637.1  Ankyrin repeats (many copies)
    1.5e-12   46.4  11.3    1.7e-06   27.4   1.0    4.4  4  PF00023.25 Ankyrin repeat
    1.3e-11   43.3   7.0    0.00046   20.0   0.2    4.2  4  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.35   9.6e+02      19      42 ..       5      28 ..       3      32 .. 0.84
   2 !    8.7   0.1   0.00069       1.9       3      35 ..      23      55 ..      21      56 .. 0.89
   3 !   12.4   0.0   4.6e-05      0.13      18      36 ..      69      87 ..      59     100 .. 0.80
   4 !   38.3   0.1   3.3e-13     9e-10      10      56 .]     133     179 ..     127     179 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.35
    PF13857.1 19 pLhlAakggalevvrlLlapgadl 42
                 +L +A+  g+ +++++ +++gad+
  MMETSP0890-20130614|24415_1  5 ALLKACAIGNESALKYAIEHGADT 28
                 788899999999999999999885 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00069
    PF13857.1  3 ehgpadvnatdeggntpLhlAakggalevvrlL 35
                 ehg++ + a+d+ g +  h+Aa gg+l v+ +L
  MMETSP0890-20130614|24415_1 23 EHGADTIRARDPMGANCAHMAALGGQLRVAVWL 55
                 677777888999999****************98 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 4.6e-05
    PF13857.1 18 tpLhlAakggalevvrlLl 36
                  pLh+Aa++g+l++v +++
  MMETSP0890-20130614|24415_1 69 LPLHFAAHNGHLQLVAFFV 87
                 7**************9998 PP

  == domain 4    score: 38.3 bits;  conditional E-value: 3.3e-13
    PF13857.1  10 natdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                    td +g t+Lh Aa gg+l+++r+L+++ga++n+ + d lt+ d+A
  MMETSP0890-20130614|24415_1 133 SLTDAHGGTALHHAALGGHLPILRYLIHYGANTNTLTVDRLTPEDIA 179
                  45677777**************************************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   8.2e-11   2.3e-07       1      80 [.       6      88 ..       6      99 .. 0.90
   2 !   37.1   0.6   9.7e-13   2.7e-09       1      76 [.      71     189 ..      70     202 .. 0.49

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 8.2e-11
    PF12796.2  1 LhlAaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLle 80
                 L  A+  gn +++k+ +e+gad  +     g ++ h Aa  g+l ++ +L  + + + +   +g  pLh+A+ nghl lv + ++
  MMETSP0890-20130614|24415_1  6 LLKACAIGNESALKYAIEHGADTIRardpmGANCAHMAALGGQLRVAVWLPRKLQRMSDA--QGILPLHFAAHNGHLQLVAFFVQ 88
                 56799*****************99999999999*****************9998888665..8*****************99885 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 9.7e-13
    PF12796.2   1 LhlAaengnlelvklLlekgadvdl........get...................................pLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvk 76 
                  Lh+Aa ng+l+lv ++++ ++ ++         +e+                                   +Lh+Aa  g+l i+++L+ +ga+ n+ + +  tp  +A + gh+ ++ 
  MMETSP0890-20130614|24415_1  71 LHFAAHNGHLQLVAFFVQGENGLEQslldewfnQENdvlnmrskfietlqkkdalstiqenisltdahggtALHHAALGGHLPILRYLIHYGANTNTLTVDRLTPEDIAKQVGHIHVLI 189
                  56666666666666664433333322222222211122333333333333344444444445555555555666666666666666666666666666666666666666666665555 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   2.9e-07    0.0008       3      53 ..       4      55 ..       2      55 .. 0.94
   2 !   15.5   0.0   6.2e-06     0.017      30      53 ..      62      86 ..      58      87 .. 0.89
   3 !   22.9   0.2   2.9e-08   7.9e-05       3      53 ..     141     191 ..     132     191 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.9e-07
    PF13637.1  3 taLhyaaisgrlelvklLlekgid.inrtdesGntaLhiAalrgnieilklL 53
                 +aL +a++ g++ ++k+ +e+g+d i ++d  G ++ h Aal+g+++++ +L
  MMETSP0890-20130614|24415_1  4 SALLKACAIGNESALKYAIEHGADtIRARDPMGANCAHMAALGGQLRVAVWL 55
                 788899999********************999****************9998 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 6.2e-06
    PF13637.1 30 t.desGntaLhiAalrgnieilklL 53
                   d++G  +Lh+Aa +g+++++ ++
  MMETSP0890-20130614|24415_1 62 MsDAQGILPLHFAAHNGHLQLVAFF 86
                 3599******************998 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 2.9e-08
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  taLh+aa  g+l+++++L+ +g++ n +  +  t+ +iA + g+i++l lL
  MMETSP0890-20130614|24415_1 141 TALHHAALGGHLPILRYLIHYGANTNTLTVDRLTPEDIAKQVGHIHVLILL 191
                  89*****************99*******9999*******999999999987 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0023       6.3       4      28 ..       4      28 ..       2      30 .. 0.92
   2 ?    1.3   0.1      0.12   3.2e+02       7      21 ..      41      55 ..      35      55 .. 0.81
   3 !   15.1   0.0   4.9e-06     0.013       2      23 ..      67      88 ..      66      95 .. 0.88
   4 !   27.4   1.0   6.2e-10   1.7e-06       2      31 ..     139     168 ..     138     170 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0023
                 BHHHHHHHTTHHHHHHHHHHTTSST CS
   PF00023.25  4 TPLHlAalrgnlevvklLlsqGAdl 28
                 ++L  A+  gn + +k+ +++GAd 
  MMETSP0890-20130614|24415_1  4 SALLKACAIGNESALKYAIEHGADT 28
                 78999******************95 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.12
                 HHHHHTTHHHHHHHH CS
   PF00023.25  7 HlAalrgnlevvklL 21
                 H+Aal g+l+v+ +L
  MMETSP0890-20130614|24415_1 41 HMAALGGQLRVAVWL 55
                 *********998665 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 4.9e-06
                 SCBHHHHHHHTTHHHHHHHHHH CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLls 23
                 G  PLH Aa++g+l+ v ++++
  MMETSP0890-20130614|24415_1 67 GILPLHFAAHNGHLQLVAFFVQ 88
                 778***************9998 PP

  == domain 4    score: 27.4 bits;  conditional E-value: 6.2e-10
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  G T+LH Aal g+l ++++L+ +GA+ n  
  MMETSP0890-20130614|24415_1 139 GGTALHHAALGGHLPILRYLIHYGANTNTL 168
                  77************************9965 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.9e-05     0.052       3      27 ..       3      27 ..       1      31 [. 0.91
   2 ?   -2.0   0.0       2.1   5.7e+03       6      20 ..      40      54 ..      36      55 .. 0.74
   3 !   11.1   0.0   0.00013      0.35       2      22 ..      67      87 ..      66      93 .. 0.85
   4 !   20.0   0.2   1.7e-07   0.00046       1      29 [.     138     166 ..     138     167 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-05
    PF13606.1  3 nTpLhlAasngrielveaLlengad 27
                 +++L  A+  g+ +++++ +e+gad
  MMETSP0890-20130614|24415_1  3 DSALLKACAIGNESALKYAIEHGAD 27
                 689*********************9 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.1
    PF13606.1  6 LhlAasngrielvea 20
                  h+Aa  g++ ++ +
  MMETSP0890-20130614|24415_1 40 AHMAALGGQLRVAVW 54
                 69**99888877665 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00013
    PF13606.1  2 GnTpLhlAasngrielveaLl 22
                 G  pLh Aa+ng+++lv + +
  MMETSP0890-20130614|24415_1 67 GILPLHFAAHNGHLQLVAFFV 87
                 5679************98876 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 1.7e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                  +G T+Lh+Aa  g++ ++++L+ +ga+ n
  MMETSP0890-20130614|24415_1 138 HGGTALHHAALGGHLPILRYLIHYGANTN 166
                  588***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1383  (0.101156); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.92
# Mc/sec: 1096.59
//
Query:       MMETSP0890-20130614|24433_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-16   59.1   0.0    5.3e-16   58.7   0.0    1.2  1  PF00565.12 Staphylococcal nuclease homologue
  ------ inclusion threshold ------
       0.02   14.2   0.0      0.031   13.7   0.0    1.2  1  PF10821.3  Protein of unknown function (DUF2567)


Domain annotation for each model (and alignments):
>> PF00565.12  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   7.7e-20   5.3e-16       1      79 [.      84     168 ..      84     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 7.7e-20
                  EEEBTTEE-TSSSSSTXTTS----HHHHHHHHHHHH.HSSEEEEE---SS---EE-EEEEE-.......--BHHHHHHH---EEE-- CS
   PF00565.12   1 kvrLvgidaPetakpkktvqpfgkeAkeflkklvlq.kkvvvleldkkkDkygrllayvyln.......kknineeLvkeGlArvye 79 
                  k+rL+ +daPeta+++++ qp g  Ak+f+++++ + +kv+++ l++  D+ygr +a++ +          +i+e+L++eGlA+vy+
  MMETSP0890-20130614|24433_1  84 KIRLCAVDAPETAHFGNAGQPLGPVAKAFVAERLPEgRKVKIKLLSR--DRYGRAVARITYRtgifglcTDDISEALLREGLATVYT 168
                  79****************************99997515555555666..***********************************997 PP

>> PF10821.3  Protein of unknown function (DUF2567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.5e-06     0.031      75     159 ..       9      91 ..       3      96 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.5e-06
    PF10821.3  75 PvlvaalaiglvaaaavaagvGalvvrlRygaldldavPlse.dkavayvveappvffarrplqialtllfpaav.aalvyallaaa 159
                   vlv+ +  glv +a + a +G  + + Ryg++d   +P s  dk+v +++ + +      +l+++   lf aa  ++l + l+a+ 
  MMETSP0890-20130614|24433_1   9 SVLVGVFISGLVFGASAQASIGDSM-WRRYGSVD--DIPSSAfDKHV-TITGIVSKITDGDTLKVQHQPLFRAAAsTSLKIRLCAVD 91 
                  578899999*************986.67****99..89999955555.455555555566778888887777655156667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.76
# Mc/sec: 589.63
//
Query:       MMETSP0890-20130614|24437_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.015   15.0   0.0    1.1  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain
      0.059   12.6   0.0       0.08   12.2   0.0    1.2  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.2e-06     0.015       2      41 ..      40      78 ..      39      90 .] 0.69

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-06
    PF12850.2  2 kiaiiSDlHgnldaleavledikevdlilhaGDlve...peev 41
                 +++ iSD+H++ ++++++ +     d+++haGD+++    ee+
  MMETSP0890-20130614|24437_1 40 RLVCISDTHSQHEKMTDLPQG----DILVHAGDFTTlgkAEEI 78
                 6789*********96666655....********9775542333 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05      0.08       1      46 [.      39      74 ..      39      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
                 EEEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHH CS
   PF00149.23  1 lrilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgd 46
                 +r ++i+D+H ++          +++   ++ d+++++GD++  g+
  MMETSP0890-20130614|24437_1 39 IRLVCISDTHSQH----------EKMTDLPQGDILVHAGDFTTLGK 74
                 58899********..........589***************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.30s 00:00:00.63 Elapsed: 00:00:00.60
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|24465_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-32  110.4   0.0    9.9e-32  110.0   0.0    1.2  1  PF04427.13 Brix domain


Domain annotation for each model (and alignments):
>> PF04427.13  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   7.2e-36   9.9e-32       3     190 ..      42     226 ..      40     227 .. 0.90

  Alignments for each domain:
  == domain 1    score: 110.0 bits;  conditional E-value: 7.2e-36
   PF04427.13   3 tsrkpskrlrqllkdlrslmppnakklkrgkknklk.dllelagekgvthllvvgeskkrpsslrigrlpngptlefrvenykllkdikkakkrpk..gskpllvfngftteldpegkllkellqdlFpppnvekislksidrvilfsnqrdtvisfRhy.i..fks.gskvvkkllravkLeeiGPrftlrlik 190
                   sr ++ r r+l++d+++l+ p++k  ++ +++  +  l+e+++ k+++ +l+++ +k  +++ ++gr  +gp+++f+v+n+++++++  ++++++  g++ ll+f+ ++++  p+ +l k ll++ F +p+ + +s+ ++d+ ++f   +++ i+fRhy i  +   +++  +      kL+eiGPrf l +++
  MMETSP0890-20130614|24465_1  42 ASRGITARQRHLMDDISKLL-PHHKAESKLDAKGDPrALNEISELKSCNGVLYFEARKRSDLYAWFGRPQDGPSFKFQVLNIHTMDEL--RLTGNCalGTRALLCFDSSFDSA-PHWRLAKALLAQTFGTPRGHPKSKPFFDHALSFAILDEK-IWFRHYqIciDDDaIDEINR-----LKLVEIGPRFVLAPVR 226
                  589999**************.**********8777799**************************************************..59999*88888*******99875.**********************************97788.******55763332444444.....6***********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 944.85
//
Query:       MMETSP0890-20130614|24477_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-20   71.0   0.0    1.1e-19   70.5   0.0    1.3  1  PF03435.13 Saccharopine dehydrogenase
    2.3e-05   23.8   0.0    6.4e-05   22.3   0.0    1.8  2  PF01370.16 NAD dependent epimerase/dehydratase family
    0.00042   19.0   0.0     0.0012   17.5   0.0    1.8  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    0.00046   20.0   0.0     0.0013   18.5   0.0    1.8  1  PF00106.20 short chain dehydrogenase
     0.0051   16.7   0.1       0.11   12.3   0.0    2.3  2  PF13460.1  NADH(P)-binding
     0.0098   15.4   0.0      0.021   14.3   0.0    1.5  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0     5e-23   1.1e-19       2     368 ..      23     409 ..      22     425 .. 0.80

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 5e-23
   PF03435.13   2 lvlGa.GsvGqavaellarhgdvd....eitvadrtlekaqalaaka...........lglrveaialdvsnyeaLeallkegdlvvnlappi...lsltvlkaCietg..vhyvd....tsylreavlalkekak.eaGvtavleaGfdPGlvslfakkalddla...aelakvlsvkihcGelpapepkdnglefkntwspegvleelqppakylkngkivevgwgsheetldfpytigpgkayeiylnrdstntrvrswlpeaggvligtiriqgyltvik.vledlgllrptvhyay...gppldalsalleskaslgeeeqdkvvirveveGidkdGklltgtiynvygsgls.ieegrsamaytvgtplqvaaavlaggewakaGvvepeemldp 368
                  lv+G+ G+vG+a++++l+r g       +++v +r+ ++ q +++             +  +ve+ ++d++++ +L  +l+++ l+v+ a+p+     +++l+a +++g  + yvd    t+  r a  + +e+ + ++ +ta+ +aG+ PG++ ++a++a+d l+   ++ +  l ++ + ++         g +   t  ++++l+ ++p++ + +ng+ +e  + +  + +df  ++g++++  +  ++ +t++ ++   ++  ++l  + r++  ++ ++ +++    l p    a+   ++ l+++s  +  +++   + ++   i  +++      ++ t+t++n   ++       ++    +vg+ +++ a  l+  +  k+G+ +p e+ + 
  MMETSP0890-20130614|24477_1  23 LVIGGsGRVGGATVRWLERMGRECgiplKLAVGGRSIKNFQSMKDRWrfqsrfeasepAIDEVEFFEIDINDPNSLRNALQGHRLIVHTAGPFqqiREPKILDAILAHGekCAYVDvcdeTELCRIAHSKDRERLAiNNEITAIISAGIWPGISAIMARQAIDMLQaqyNTSKFDLDFDFFTSGT--------G-GAGPTIVSATFLLLCTPALNFDQNGQQIENEPWTLPKIVDFGPQVGKRCTRLLDCPEIATLSYALQNEQNY-NMLASASRFATAPNIWNqLFGTTKALLPPSLLANrdtMQRLAVFSDPIVRAVDSLVGSKNAMLITATDR--SSSTRTTTRTSQND-SNKVVyARHVHEDLEAAVGIATAAFALHLLHDDNVKPGIRFPAEL-SS 409
                  799999************998877888****************9887**********999*********************************998899****9888754499***8888888888888888876669****************************7777777789999999999........7.88999999999**9***********************88**************887777777777777554.*****************9999888888877766655533333333333333333333333333333333..34444445555555.455556667788888888888887777777777678888888774.44 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.8e-08   6.4e-05       1      75 [.      22     114 ..      22     158 .. 0.82
   2 ?   -1.3   0.0      0.47   1.1e+03      47      90 ..     144     188 ..     121     194 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.8e-08
                  EEEE--------HHHHHHHHH-TEEE.....EESSCSTCCCCCCHHH................TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S- CS
   PF01370.16   1 ilVtGatGfiGsalveallekgyevv.....nlirrtrseslatvri................rvelveldltdkdalerlfaeeqpdaVihlAae 75 
                  +lV+G++G +G a+v+ l++ g e+      ++++r+ ++ ++  +                 +ve++e+d+ d+++l+++++++    ++h A+ 
  MMETSP0890-20130614|24477_1  22 ALVIGGSGRVGGATVRWLERMGRECGiplklAVGGRSIKN-FQSMKDrwrfqsrfeasepaidEVEFFEIDINDPNSLRNALQGH--RLIVHTAGP 114
                  59**********************6668965333333322.3333336689**********************************..*******95 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.47
                  EB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHH CS
   PF01370.16  47 veldltdkdalerlfaeeqpdaVihlAaesgvdass.edpadfie 90 
                  + + + ++++ erl  +++++a+i ++ + g++a +  ++ d+++
  MMETSP0890-20130614|24477_1 144 ELCRIAHSKDRERLAINNEITAIISAGIWPGISAIMaRQAIDMLQ 188
                  345566666666666666888888888888887777666666655 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.2e-07    0.0012       1      95 [.      23     131 ..      23     151 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.2e-07
   PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvld................lrespelleelsklqvktvlegDvtdkekleealegvdvvihtaaiidvlgkaerdeilkvnvkG 95 
                  lV+GgsG +G + vr L ++++   + +                   r++++ + +   ++  ++ e D++d ++l++al+g  +++hta+  +     e++ ++++  +G
  MMETSP0890-20130614|24477_1  23 LVIGGSGRVGGATVRWLERMGRECGIPLKLavggrsiknfqsmkdrWRFQSRFEASEPAIDEVEFFEIDINDPNSLRNALQGHRLIVHTAGPFQQIR--EPKILDAILAHG 131
                  68888888888888888887764333222223555554554444333333333333334444449************************98655444..444555555555 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.9e-07    0.0013       2      89 ..      21     113 ..      20     125 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.9e-07
                  EEEE---------HHHHHHHHHSSE.....EEEEEESS........SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE-- CS
   PF00106.20   2 tvliTGGlgglGlalArwLveegar.....hlvlvsrr.......edapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnag 89 
                  ++l+ GG+g +G a++rwL + g +     +l++ +r+       +d  + +   ++ e +  ev+++ +D+ d+++l+++l+ +r       ++vh+ag
  MMETSP0890-20130614|24477_1  21 SALVIGGSGRVGGATVRWLERMGREcgiplKLAVGGRSiknfqsmKDRWRFQSRFEASEPAIDEVEFFEIDINDPNSLRNALQGHR-------LIVHTAG 113
                  58******************9987733333577777779877665444444444555555669*********************99.......8888888 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.094   2.2e+02       2      18 ..      23      39 ..      23      49 .. 0.87
   2 !   12.3   0.0   4.8e-05      0.11      38      84 ..      82     126 ..      68     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.094
    PF13460.1  2 aviGAtGktGrrivkel 18
                 +viG++G++G ++v+ l
  MMETSP0890-20130614|24477_1 23 LVIGGSGRVGGATVRWL 39
                 79*********999865 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 4.8e-05
    PF13460.1  38 ssgvtivkkDlfdledlaealagvdvvvdafgarpe..dregvkhllda 84 
                   + v+++++D++d+++l++al+g + +v+++g+ +   +     ++lda
  MMETSP0890-20130614|24477_1  82 IDEVEFFEIDINDPNSLRNALQGHRLIVHTAGPFQQirE----PKILDA 126
                  45799***************************8665441....233333 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.4e-06     0.021       3      75 ..      22     105 ..      21     118 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.4e-06
                  EEE----SHHHHHHHHHHHH----.....-EEEEE--....---------HHHHHH---...-EEEEE--TTSHHHHHHHH--- CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergar.....hlvllsrsa...apdeeaeallaelealga...evtvvaaDvadrdavealleev 75 
                   Lv+GG g +G +++rwL + g++     +l++ +rs    ++ ++  ++ ++ ea +    ev++ ++D+ d+++++++l+  
  MMETSP0890-20130614|24477_1  22 ALVIGGSGRVGGATVRWLERMGREcgiplKLAVGGRSIknfQSMKDRWRFQSRFEASEPaidEVEFFEIDINDPNSLRNALQGH 105
                  59*****************999874455578888999645544444444445555544345599**************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.94
# Mc/sec: 1091.11
//
Query:       MMETSP0890-20130614|24479_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-13   47.6   0.0    1.3e-12   47.2   0.0    1.2  1  PF13806.1 Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF13806.1  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   9.4e-17   1.3e-12       2     104 .]      48     159 ..      47     159 .. 0.96

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 9.4e-17
    PF13806.1   2 WvpvcklddlvpetgvaalvdgeqvalfrlekeevyAienldPaskanvlsrGlvgdlkgelvvasPlykqhfdLktGecle..............deevslkvypvrvedgkveva 104
                  +vp +++++l p++ v a + g  +++++ ++++vyA++n++P+    +++ G v++     ++++Pl+++ f+LktGe++                e+  l+v++++  +g+v v+
  MMETSP0890-20130614|24479_1  48 FVPAVSTAELGPGKAVSAICSGLDICIAVDTDGSVYALGNKSPVL-GTPMALGAVKAG----TIKDPLTGTSFSLKTGEVVGkwcpnfpfsflfqlIEPAGLPVFKCKSGGGAVSVE 159
                  788999**************************************5.89*******995....*********************************9999***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.83
# Mc/sec: 542.79
//
Query:       MMETSP0890-20130614|24484_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-40  136.1   0.3    1.1e-39  135.8   0.2    1.1  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.2     8e-44   1.1e-39       2     200 ..      69     263 ..      68     264 .. 0.96

  Alignments for each domain:
  == domain 1    score: 135.8 bits;  conditional E-value: 8e-44
                  EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
   PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeHv 200
                  +i ++gD+Hg++ dl   l+ ++e + +  +  +lflGD+vdrg++++e   ll  l++k ++p  +f+lrGNHE+  +n+ ygf +e+                                     +g + +++++++f+++p +a++d ki+++Hg+ls+++   d+i                                   g+++ fgpd+++k+le +++dl++r+H+ v
  MMETSP0890-20130614|24484_1  69 PIKIVGDIHGQYTDL---LRMFEECGWPQHDIHYLFLGDYVDRGPNGLEAVLLL--LCYKAKYPSTFFMLRGNHECAAINRIYGFCDECK----------------------------------RAYGLKLWKQFNDVFNCMPVAASIDEKIFCVHGGLSPELRALDQIanirrptdvpdagmmcdflwadpephttgwaeserGVSYTFGPDVVRKFLETHDFDLLVRAHQVV 263
                  799************...677777777777778*********************..*********************************9..................................79*********************************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.71
# Mc/sec: 1174.55
//
Query:       MMETSP0890-20130614|24490_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-52  177.2   3.9    4.9e-28   97.9   1.2    2.0  2  PF01080.12 Presenilin


Domain annotation for each model (and alignments):
>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   1.2   3.6e-32   4.9e-28      15     232 ..       7     225 ..       2     243 .. 0.83
   2 !   81.9   0.0   2.6e-27   3.5e-23     276     394 ..     224     343 ..     212     347 .] 0.75

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 3.6e-32
   PF01080.12  15 kllvpVslcmllvvatiksvsfyeqkdeklvYtlfteeeetvge.klldsllnalilisvlvvvtillvvlykykfykiikawlilsslllLflfsvlyleevlkavnvavdvvlvlllivnfGvvGivaihwkg....plrLqqiylitvaaLialvflkvlPewtaWlvLavisvwDlvAVLaPkGPLrmlvEtAqerneqifpaliysstvvvltvgsnq 232
                   +l pV + m+l ++ +   ++    ++ lvY  + ++   v++ ++ ++ +nal +++v+ ++t+ +v ly   +   ++++++ ss  lL ++    +  vl + ++ +dv +++++i+n+ +vG+ ai++      p+    +yli  a ++a   l  +P  t+W +L+ + ++Dl+AVLaP+GPL  lv     r e+ +p l+y ++    +    +
  MMETSP0890-20130614|24490_1   7 AVLRPVFVTMSLSASLVAWTRPK--SHVALVYQEDDDDITVVTKdRVEKGAANALAIVGVILLTTCCVVGLYWCGCTSCLRGYMMFSSATLLGILGGGLFATVLVKAEIHLDVFTLFIIIINWAAVGVAAIYSPFkfglPRSATRAYLISAAVVLA-WHLSTYPPVTTWCALIGLALYDLFAVLAPCGPLNALVQLMATRREP-LPGLLYEAQIDTDEYIDET 225
                  6889999***9999888776654..4569****999987766651667899*********************************************************************************86511125666899***8777776.689999********************************99999887.79****9996655444233 PP

  == domain 2    score: 81.9 bits;  conditional E-value: 2.6e-27
   PF01080.12 276 eesddesdssetesqedsslaeeevakevdevqs.nslrsnekreeeeergvkLGlGDFvFYSvlvGkaaatgdwntviacfvaiLiGLvltLlllavfkkalPALPlsiiiglifyFst 394
                  e+ + +s++   +++ ++ + e++++ + ++ +s ++  s++  ++++ + vkLGlGDFvF+Svlv + a++  +    a+ +a LiGL  tL+ll+ +k+alPALP+si++g+   F +
  MMETSP0890-20130614|24490_1 224 ETDRISSQADSRQTHGNIDNIEDNIPIQYHHRNSkSNDDSDDLDTNNKRDPVKLGLGDFVFFSVLVANDAKQQGFVPAAAATLACLIGLATTLILLTFSKRALPALPISIALGVTASFFA 343
                  444445555555555566666666666655555512333444555588999*****************99999999999**********************************9877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:01.12
# Mc/sec: 735.87
//
Query:       MMETSP0890-20130614|24522_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-13   49.6   0.0    6.6e-13   48.7   0.0    1.5  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   4.9e-17   6.6e-13       2     183 ..      57     277 ..      56     290 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 4.9e-17
    PF04755.7   2 klkrkLldaisgterGlsassddraeieelvkklealnptpaples....ldlLdGkWrLlYttskellpllarkklpllkvgeiyQtIdvenksvqNsve.......lsg..lpllegsv...svaakfevaspkrvelkFeravlklkkl.......................lkglltslqdtasniaraissqlpikf....rlsgeeakgwLeitYlDed 183
                  +lkr+ l + +  +rG+ as +dr++ie l   l a+npt + +++    ++ L   WrL+Yt+++++  l   ++ p+ ++g iyQ+ ++   +v N++        l++  +     ++   +v   ++ + p+r+ l F+r  +++k+                         k+l +  + +  +ia+   ++   +     + s++ + + +++ YlDed
  MMETSP0890-20130614|24522_1  57 NLKREILALCASCDRGFGASGEDRDQIELLLSDLSAMNPTASATNDflttDSPLRKCWRLVYTSASDVSVL---GANPVFTLGGIYQDARML-PTVINVIDarpkilaLAPtqFAASIDTLsrqKVFTTAKARGPNRIGLAFDRVEIEPKTFfgrdlprlpfalgidlpkfpaeaQKQLFDVANSIFGQIAPDSFTSFDSDWtttdEDSDSGNPAYFDVNYLDED 277
                  79**************************************99986522225678999***********999...9999**********9875.567777775555322222333333333311134455667889*************999999999**9*9999997777666533333333333333333322222222200003455556667888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.79
# Mc/sec: 913.04
//
Query:       MMETSP0890-20130614|24524_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-18   65.9   6.1    3.3e-18   65.7   4.3    1.0  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.06   12.4   0.6      0.086   11.8   0.4    1.2  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   4.3   4.8e-22   3.3e-18       1      87 [.      20     113 ..      20     116 .. 0.89

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 4.8e-22
   PF00428.14   1 eptaadikavlkaagveveaerlkllvkalegkdikeliangsakla........aaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                  +pt +d+k vl+++  e+++++l++l+  legkdi +li +g +k+         + ++ + a aaa+++aaaa+eekkeeee Eee+ dmG+g+
  MMETSP0890-20130614|24524_1  20 QPTVEDLKEVLSSVDSEADEAQLSALLGDLEGKDIASLIDSGLEKIKdipiggggGGGGGGGAVAAAGDGAAAADEEKKEEEE-EEEEIDMGGGM 113
                  59*******************************************99*******97777788888888888888888888887.58888***774 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   1.3e-05     0.086     225     246 ..      88     109 ..      75     111 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   PF01056.13 225 dseseeeeeeeeeeeeeeeiDv 246
                  d     +ee++eeeeeeeeiD+
  MMETSP0890-20130614|24524_1  88 DGAAAADEEKKEEEEEEEEIDM 109
                  44447899999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.47s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 404.79
//
Query:       MMETSP0890-20130614|24525_1  [L=947]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-31  107.8   0.0    7.7e-31  107.1   0.0    1.3  1  PF02816.13 Alpha-kinase family
  ------ inclusion threshold ------
        6.9    7.3   8.5         95    3.7   0.1    4.0  3  PF08238.7  Sel1 repeat


Domain annotation for each model (and alignments):
>> PF02816.13  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   1.1e-34   7.7e-31       1     183 [.     193     384 ..     193     389 .. 0.91

  Alignments for each domain:
  == domain 1    score: 107.1 bits;  conditional E-value: 1.1e-34
                  SB----EEEEEEEE-..........HHHT----EEEEEEE--...---T--HHHHHHHHHHHHHHHH---HHHHT.....--SS--EE---E.EEEETTS----EEEEEEE----......-----B-----B-S--SHH.....HHHHHHHHHHTTTS-EEE--B--TTEEBS-EEE-----------------HHHHHH- CS
   PF02816.13   1 faeGalrkafrvkdl..........deneesgskyVaKvykk...kaklaeeelyfeevksqliakelakkFnkelqeeenkkkkieflpsllvyelenkskekklilvEpflkg......efkKynsnsgkvetkrrseveelaqaFShFtYeesggqllvvdlqgvgdiltDpqihtkdgkgfgtgnlgeegiekFleqh 183
                  f++Ga+r +fr+k++            n++++++y+ K+y     + ++  +  ++ +v+ ql a  + + Fn++l+    ++k++++++++  +e+ ++++  +++lvE+f++g       f+K nsn g+v   +++e +   q +S  t+  s+g+ +v+d+qgv d++tDpq htk + + gtg+lg++g++ F+++ 
  MMETSP0890-20130614|24525_1 193 FDRGAMRRCFRMKKVsqqpnrasihPLNWRKANNYIGKQYLDpetSRHDGGKAAIMLDVQLQLCAAVFTDSFNTKLR----PPKRVKIIDCF-AIEFYDRTP-VEYMLVERFISGkdeygrGFVKHNSNIGYV---DDDEKRLTPQVLSAATFWLSRGRAMVTDVQGVADLYTDPQLHTKAQSF-GTGDLGRRGMAFFFQSY 384
                  789*********************9899**************6543336677999********************88....9**********.999999999.9***********9999999***********...445555566***********************************8885.**************976 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.014        95      15      39 .]     750     772 ..     725     772 .. 0.86
   2 ?    2.8   1.1     0.027   1.8e+02       1      31 [.     773     801 ..     773     807 .. 0.79
   3 ?    2.5   0.0     0.033   2.3e+02      20      35 ..     904     919 ..     898     921 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.014
    PF08238.7  15 nGlgGvpkdpekAleWyekAAeqGh 39 
                   G+  +p+d+ +A +++ +AA +G+
  MMETSP0890-20130614|24525_1 750 AGQ--TPRDLTEAGKLLVLAALRGD 772
                  576..99**************9986 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.027
    PF08238.7   1 aeAqynLGlyymylnGlgGvpk..dpekAleWy 31 
                  ++A+ +L+  +++ +G +G+pk  ++++A   y
  MMETSP0890-20130614|24525_1 773 PPAAAALA--HALAEGALGLPKhrPLARA--FY 801
                  6899****..888****99*997775555..55 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.033
    PF08238.7  20 vpkdpekAleWyekAA 35 
                  v +d + A e++++AA
  MMETSP0890-20130614|24525_1 904 VSPDASIAAEYLQRAA 919
                  5567888********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:01.08
# Mc/sec: 2101.25
//
Query:       MMETSP0890-20130614|24527_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.023   13.7   0.0    1.2  1  PF02404.10 Stem cell factor
      0.096   12.6   0.0       0.16   11.9   0.0    1.3  1  PF14316.1  Domain of unknown function (DUF4381)
       0.14   12.3   0.0       0.28   11.3   0.0    1.4  1  PF11337.3  Protein of unknown function (DUF3139)


Domain annotation for each model (and alignments):
>> PF02404.10  Stem cell factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-06     0.023     191     248 ..     303     362 ..     296     370 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.1e-06
   PF02404.10 191 sslr..ndssssnkkaldsiedsslqgiaialtallslligfilgalywkkkqpsltrsv 248
                  ssl   ++ s+s + + ++  +++l +  + l  +  + + ++ g +ywkk+q ++ + v
  MMETSP0890-20130614|24527_1 303 SSLYptDNDSNSGQVSKKTTTSNALPWWGVFLLIIAVICVMLLGGLIYWKKTQQQMRDQV 362
                  5554212348899999999***********9988777777777899*******9776665 PP

>> PF14316.1  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.4e-05      0.16      20      61 ..     326     369 ..     323     390 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.4e-05
    PF14316.1  20 apgwwlllalllllllvllir...llrrrkrnryrreAlreLaql 61 
                  a+ ww +++l++++++v+l+    ++++ ++ ++r +    La++
  MMETSP0890-20130614|24527_1 326 ALPWWGVFLLIIAVICVMLLGgliYWKKTQQ-QMRDQVRGILAEY 369
                  5668877777777766544442213333333.3555555555444 PP

>> PF11337.3  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.2e-05      0.28       6      48 ..     332     374 ..     330     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.2e-05
    PF11337.3   6 viliviilivislvvgivlffagkqyerhkalkavdsyleekg 48 
                  v+l++i +i ++l+ g +++++ +q  r+++     +y+  ++
  MMETSP0890-20130614|24527_1 332 VFLLIIAVICVMLLGGLIYWKKTQQQMRDQVRGILAEYMPLED 374
                  67899999999*********************99999997666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       697  (0.0509801); expected 273.4 (0.02)
Passed bias filter:                      556  (0.0406671); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.42s 00:00:01.20 Elapsed: 00:00:01.48
# Mc/sec: 636.33
//
Query:       MMETSP0890-20130614|24526_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   17.6   1.4     0.0036   17.6   1.0    4.4  4  PF04692.8 Platelet-derived growth factor, N terminal region


Domain annotation for each model (and alignments):
>> PF04692.8  Platelet-derived growth factor, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5      0.27   3.7e+03      65      65 ..     147     147 ..      87     198 .. 0.65
   2 ?   -2.4   0.2      0.47   6.4e+03      42      42 ..     223     223 ..     185     261 .. 0.53
   3 ?   -3.9   3.8         1   1.4e+04      15      69 ..     295     346 ..     287     351 .. 0.51
   4 !   17.6   1.0   2.6e-07    0.0036       8      46 ..     502     559 ..     500     596 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.27
    PF04692.8  65 R 65 
                  R
  MMETSP0890-20130614|24526_1 147 R 147
                  1 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.47
    PF04692.8  42 d 42 
                  +
  MMETSP0890-20130614|24526_1 223 S 223
                  1 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 1
    PF04692.8  15 nseirSisDLQRlLeidsvgaedeveedlkakashknkh.vedkksrqllsRrkRs 69 
                  ns+i+Si+ L      +  ++e++ +  l++ ++++ ++   + + r+  +  kR 
  MMETSP0890-20130614|24526_1 295 NSKIQSIKSLRN----EYRSQEEKFKSYLRQLKQQRDEQkRLEEEARKAEIEAKRK 346
                  566777766543....3334555555555543333222223344455555555555 PP

  == domain 4    score: 17.6 bits;  conditional E-value: 2.6e-07
    PF04692.8   8 elierLsnseirSisDLQRlLeidsv...................gaedeveedlkak 46 
                  e +  L + +i+Si+DLQ+  e+ds                    +a+  +++++k+k
  MMETSP0890-20130614|24526_1 502 EWFSTLPRGQIKSIRDLQKQQEVDSSknnhainpqrlnstaasnvTANHDTTKNTKSK 559
                  556779999*****************77777777777665555442222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3011  (0.220231); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                       134  (0.00980105); expected 13.7 (0.001)
Passed Fwd filter:                        49  (0.00358397); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.89u 0.43s 00:00:03.32 Elapsed: 00:00:02.27
# Mc/sec: 655.57
//
Query:       MMETSP0890-20130614|24528_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-46  157.5   1.2      2e-45  154.1   0.9    2.5  1  PF13328.1  HD domain
    1.4e-18   66.3   0.0    3.7e-18   65.0   0.0    1.8  1  PF02824.16 TGS domain
    3.6e-18   65.5   0.1    1.1e-17   63.9   0.0    1.9  2  PF04607.12 Region found in RelA / SpoT proteins
    9.6e-10   38.4   0.0    4.5e-09   36.2   0.0    2.3  2  PF01966.17 HD domain
      0.007   16.3   0.9      0.018   15.0   0.0    2.1  2  PF01730.11 UreF
  ------ inclusion threshold ------
      0.032   13.6   0.0      0.083   12.3   0.0    1.7  1  PF14451.1  Ub domain fused to Mut7-C


Domain annotation for each model (and alignments):
>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.9   8.9e-49     2e-45       1     153 []     133     327 ..     133     327 .. 0.95

  Alignments for each domain:
  == domain 1    score: 154.1 bits;  conditional E-value: 8.9e-49
    PF13328.1   1 AlelAaklhaqqrkgtgepylshalevaailaelgldeetiiAalLhdvvedtett.eeirerfGeevarlVegvtelkrlekl.........................................dtaerkeeqleelrkmLlamaedirvvlikladrlhnlrslaaakrekrrdvaretldvyaplanrlgiw 153
                  Al  A+ +h +q++ +ge ++sh+++va ila+l++d et++A+lLhd+vedt++t +++  rfG+ v r+Veg t++++l+kl                                         d+ +  eeq+e+lr+mL+am++d+r++++kladrlhn+++l a +rek+ +++retl+++apla+rlgiw
  MMETSP0890-20130614|24528_1 133 ALIVAHAAHYGQKRRSGEAFVSHPVAVAFILAQLQMDVETVAAGLLHDTVEDTDVTfDQLDGRFGSGVRRIVEGETKVSKLPKLarravvkksirnvldsgtaalmsppprhdmksngitssnenDAFSIGEEQAENLRQMLVAMTDDYRIIVVKLADRLHNMQTLGAMPREKQIKISRETLEIFAPLAHRLGIW 327
                  7889999**********************************************8889**************************************999999999999999998888888876665556666***************************************************************9 PP

>> PF02824.16  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   1.6e-21   3.7e-18       1      60 []     642     701 ..     642     701 .. 0.98

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 1.6e-21
                  EEEES---EEEEEETTT-HHHHHHHH-S--GGG--EEEETSSEE-SSS---TTEEEEEES CS
   PF02824.16   1 irvytpdGkvpdlprgstveDfAykIhrslakkfiyAlVnGqrvglshvLedgDvVeIvt 60 
                  ++v++ dGk+ dl rg+tv D+A +Ih++++ ++ +Al+nGq+v  s+vL++gDvV+I t
  MMETSP0890-20130614|24528_1 642 VFVFLRDGKILDLSRGATVLDAAFQIHTDVGLHASGALINGQPVQFSYVLQNGDVVSITT 701
                  78*******************************************************976 PP

>> PF04607.12  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.5     8e+03      38      58 ..     367     387 ..     361     400 .. 0.69
   2 !   63.9   0.0     5e-21   1.1e-17       3     104 ..     405     520 ..     403     534 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.5
                  STTHHHHHHHHHHT-SSSEEE CS
   PF04607.12  38 fkddcykvlelvkklwdpkpk 58 
                  +k+d++++l+ v++  + +++
  MMETSP0890-20130614|24528_1 367 TKRDIERTLQAVHSACEKEEE 387
                  577888888888866555444 PP

  == domain 2    score: 63.9 bits;  conditional E-value: 5e-21
                  ---HHHHHHHHHH--........-CCCCCCC-S--E-EEEEESS.....TTHHHHHHHHHHT-SSSEEE....EEEEES---------EEEEEE------EEEEEEEEEEEHHHHHHHH CS
   PF04607.12   3 vKsiysiieKlrrkg........kveekfeeitDligiRvivef.....kddcykvlelvkklwdpkpk....rfkdyiaepkengYrslHtvveaekgeekvlvEiQiRtiemeawae 104
                   K++y ++ Klr+          + + + + i Dl++i v++++     ++ cy++l++++++ +  +      +kdyia pk+ngY+slH+ v   ++++++l+EiQiRt +m+  ae
  MMETSP0890-20130614|24528_1 405 FKHLYALWLKLRKLAaeeigtceNAQFNVDAIDDLLAIEVVLKHdhdddQELCYAALKVLQTQLHGAVPvpslGVKDYIAVPKPNGYQSLHFFV---QRPNGQLIEIQIRTDRMHTLAE 520
                  699999999999977889999887778899************7767777888*********7776554446689********************...99*******************9 PP

>> PF01966.17  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     2e-12   4.5e-09       3     122 .]     154     295 ..     152     295 .. 0.85
   2 ?   -3.6   0.0       4.2   9.5e+03      55      74 ..     578     597 ..     571     607 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2e-12
                  HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTHHHHS..S..HHHHHH.....HHHHHHHHHHHHHHHHHHCCS.HHHHHCCCCCCGS-TTTSHH..............................HH...HHSTTTS-HHHHHHHHHHHHHHH CS
   PF01966.17   3 eHsleVaklarrlaedlgeeedrellrlaaLlHDiGkgpfgdffekkqee..fekfkaHekvgaeilrevekrlgldledvaklirehhrswegkky..............................ps...glaerelslearivklaDrlaam 122
                  +H+++Va ++++l++d++       +++a+LlHD+++++    f++  ++  f++ +  +++g++++++++k+ +     v k ir+ ++s   +                                ++   +l ++  + + ++vklaDrl++m
  MMETSP0890-20130614|24528_1 154 SHPVAVAFILAQLQMDVE-------TVAAGLLHDTVEDTDVT-FDQ--LDgrFGSGVRRIVEGETKVSKLPKLARR--AVVKKSIRNVLDSGTAA-LmsppprhdmksngitssnendafsigeeqaENlrqMLVAMTDDYRIIVVKLADRLHNM 295
                  7*****************.......**************553.332..2245999999************999966..79999999999999744.369999******999999999888888776611567*********************98 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.2
                  .HHHHHHHHHHHHHHHHHHC CS
   PF01966.17  55 kfkaHekvgaeilrevekrl 74 
                   + +H++ +ae l  + ++ 
  MMETSP0890-20130614|24528_1 578 NLDDHHQQSAEDLATNQYDT 597
                  45689999999988877766 PP

>> PF01730.11  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.8e-06     0.018      73     119 ..     137     183 ..     102     185 .. 0.86
   2 ?   -2.6   0.1       2.2   4.9e+03      28      55 ..     375     402 ..     361     404 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.8e-06
                  HHHH-HHHHHHHH-SS--HHHH---HHHH----HHHHHHHHHHHHHH CS
   PF01730.11  73 llaeelqerlkqasaevtypvafalaaaalgipleeallaylygwae 119
                  ++a+ + ++ ++++a v++pva+a + a+l++++e+++++ l+ ++e
  MMETSP0890-20130614|24528_1 137 AHAAHYGQKRRSGEAFVSHPVAVAFILAQLQMDVETVAAGLLHDTVE 183
                  344478899999999****************************9998 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.2
                  HHHHHHHHHTT-HHHH---HHHHHHH-- CS
   PF01730.11  28 lakalralrrgdaaalrelddwllatre 55 
                  l +++ a++++++++++++++ +   +e
  MMETSP0890-20130614|24528_1 375 LQAVHSACEKEEEEEIARVAKCCQVRTE 402
                  6677788888888888888777766655 PP

>> PF14451.1  Ub domain fused to Mut7-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.6e-05     0.083      52      77 ..     678     703 ..     667     707 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
    PF14451.1  52 llvnGesagfdriledGdrvavypvf 77 
                   l+nG++++f+++l++Gd v++ +  
  MMETSP0890-20130614|24528_1 678 ALINGQPVQFSYVLQNGDVVSITTSP 703
                  489*****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.14u 0.26s 00:00:01.40 Elapsed: 00:00:01.53
# Mc/sec: 1196.61
//
Query:       MMETSP0890-20130614|24529_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-09   35.2   0.0    1.8e-08   33.7   0.0    1.8  1  PF13414.1  TPR repeat
    2.3e-08   33.1   0.1    2.2e-06   26.9   0.0    3.1  2  PF00515.23 Tetratricopeptide repeat
    1.1e-07   31.5   0.3    4.1e-07   29.7   0.1    2.0  2  PF13424.1  Tetratricopeptide repeat
    1.6e-06   27.4   0.2    0.00026   20.5   0.0    3.3  2  PF07719.12 Tetratricopeptide repeat
      2e-06   27.3   0.0    4.9e-06   26.0   0.0    1.6  1  PF02636.12 Putative S-adenosyl-L-methionine-dependent methyltransferase
    0.00014   21.2   0.0     0.0016   17.9   0.0    2.7  2  PF13181.1  Tetratricopeptide repeat
     0.0038   16.8   0.8       0.18   11.5   0.1    3.3  2  PF13176.1  Tetratricopeptide repeat
     0.0083   16.1   0.2      0.027   14.4   0.1    1.9  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.017   14.9   0.1       0.97    9.3   0.0    2.9  3  PF13374.1  Tetratricopeptide repeat
      0.028   14.7   0.0       0.46   10.9   0.0    3.0  3  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-11   1.8e-08       8      67 ..     625     683 ..     620     685 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.3e-11
    PF13414.1   8 elGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  e G  ++  +++++A+++y+ ++e   ++ + + n++l+++ lg+  + Ale++ek+l l
  MMETSP0890-20130614|24529_1 625 EVGRFYYGIREHEKALQFYRISTEHIGEHHVTFHNMGLCHYSLGQ-LDTALEHFEKSLGL 683
                  66899999************************************5.79*********976 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.065        89      10      25 ..     629     644 ..     624     648 .. 0.87
   2 !   26.9   0.0   1.6e-09   2.2e-06       4      34 .]     657     687 ..     654     687 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.065
                  HHHHTT-HHHHHHHHH CS
   PF00515.23  10 aylklgkydeAleyye 25 
                   y+   ++++Al++y+
  MMETSP0890-20130614|24529_1 629 FYYGIREHEKALQFYR 644
                  5888899********7 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.6e-09
                  HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekALelnPnn 34 
                  + n+G+++++lg++d Ale++ek L ln n+
  MMETSP0890-20130614|24529_1 657 FHNMGLCHYSLGQLDTALEHFEKSLGLNANY 687
                  78************************99775 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1     3e-10   4.1e-07      10      75 ..     625     683 ..     620     686 .. 0.88
   2 ?   -1.8   0.0       1.9   2.6e+03      20      30 ..     686     696 ..     684     702 .. 0.67

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3e-10
    PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  + + +++  +++++Al++y+ +    ++ g++h    ++ +n++ +++ lg++d Ale++ek+l +
  MMETSP0890-20130614|24529_1 625 EVGRFYYGIREHEKALQFYRIST---EHIGEHH----VTFHNMGLCHYSLGQLDTALEHFEKSLGL 683
                  67899999999999999999996...5679887....79************************976 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.9
    PF13424.1  20 dydeAlelyek 30 
                  +y++A+++ +k
  MMETSP0890-20130614|24529_1 686 NYEKARSWHQK 696
                  56666666665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.079   1.1e+02       5      25 ..     624     644 ..     621     649 .. 0.88
   2 !   20.5   0.0   1.9e-07   0.00026       4      32 ..     657     685 ..     655     687 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.079
                  HHHHHHHHHTT-HHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafe 25 
                  ++ G+ yy  +++e+Al++++
  MMETSP0890-20130614|24529_1 624 FEVGRFYYGIREHEKALQFYR 644
                  677999*************97 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.9e-07
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleldP 32 
                   +n+Gl++y lg+++ Ale+fek+l l+ 
  MMETSP0890-20130614|24529_1 657 FHNMGLCHYSLGQLDTALEHFEKSLGLNA 685
                  589*********************98885 PP

>> PF02636.12  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.6e-09   4.9e-06      15     131 ..     146     287 ..     137     376 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.6e-09
   PF02636.12  15 rpskklrlvElGpGrGtLmadvlrtlrkfepeflesleyhlvEaspklrelQkellkekakk.........a......akklgvkvrWleelkevp.....epgfilanEffDaLPvdlfqrtedgwrellveltp.......a 131
                  +ps++l +vElG+G+G++   +l++l+    ++ +     +v +  +  +   +  +++ +                  ++  ++++  +++  ++      p++i+an +fD L +d+fq ++++++e l+++         a
  MMETSP0890-20130614|24529_1 146 DPSEPLYIVELGAGSGKFSFFMLKALNAMLGSLSNFNPSRIVYVMTDFTQNNLNFWNQHPGLrpyiesgqlDlaifdaVNDETIQLHHSKTI--LKpgsmqNPICIVANYLFDTLCHDIFQVENHQLKEGLISVGSrhpfepdA 287
                  47889**********************88776655566666666777777777777664444666554443044543322222222222233..11356669***************************999887444444440 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   2.1e+03       8      25 ..     627     644 ..     624     647 .. 0.82
   2 !   17.9   0.0   1.1e-06    0.0016       5      33 ..     658     686 ..     655     687 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.5
                  --HHHHTT-HHHHHHHHH CS
    PF13181.1   8 GdiYrqlGdydkAkeyle 25 
                  G+ Y    +++kA+++++
  MMETSP0890-20130614|24529_1 627 GRFYYGIREHEKALQFYR 644
                  7778888899****9997 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.1e-06
                  TT---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   5 ynlGdiYrqlGdydkAkeylekalelkpr 33 
                  +n+G+++ +lG+ d A+e++ek l l+ +
  MMETSP0890-20130614|24529_1 658 HNMGLCHYSLGQLDTALEHFEKSLGLNAN 686
                  799*********************99865 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.27   3.7e+02       6      24 ..     627     645 ..     625     648 .. 0.82
   2 !   11.5   0.1   0.00013      0.18       2      28 ..     657     683 ..     656     708 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.27
    PF13176.1   6 arlysrlgdyekAielyer 24 
                  +r y   +++ekA+++y+ 
  MMETSP0890-20130614|24529_1 627 GRFYYGIREHEKALQFYRI 645
                  566667799********85 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00013
    PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                   +n++ ++ +lg+ ++A+e++e++L+l
  MMETSP0890-20130614|24529_1 657 FHNMGLCHYSLGQLDTALEHFEKSLGL 683
                  78*********************9987 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     2e-05     0.027       5      53 ..     636     683 ..     611     695 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-05
                  HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSH CS
    PF12895.2   5 yknAlflaekllaespkdpedaylyalAlclylngeykrAyellrk.lel 53 
                  +++Al +++   +     ++++  ++++lc+y++g+ ++A+e ++k l l
  MMETSP0890-20130614|24529_1 636 HEKALQFYRISTEHI--GEHHVTFHNMGLCHYSLGQLDTALEHFEKsLGL 683
                  444444444332222..226666677777777777777777777666444 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.11   1.5e+02       8      26 ..     626     644 ..     625     656 .. 0.85
   2 ?    9.3   0.0   0.00071      0.97       5      29 ..     657     681 ..     654     685 .. 0.91
   3 ?   -3.5   0.0       7.4     1e+04      17      28 ..     686     697 ..     686     698 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
    PF13374.1   8 LAlalrargryeeAlalee 26 
                  +++ ++  +++e+Al++++
  MMETSP0890-20130614|24529_1 626 VGRFYYGIREHEKALQFYR 644
                  6999************994 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00071
    PF13374.1   5 lnnLAlalrargryeeAlaleeeal 29 
                   +n +l ++ +g+++ Al+++e++l
  MMETSP0890-20130614|24529_1 657 FHNMGLCHYSLGQLDTALEHFEKSL 681
                  68********************998 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 7.4
    PF13374.1  17 ryeeAlaleeea 28 
                  +ye+A+ +++++
  MMETSP0890-20130614|24529_1 686 NYEKARSWHQKV 697
                  69****999986 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0        10   1.4e+04       3      12 ..      90      99 ..      90     102 .. 0.81
   2 ?   -0.9   0.0         2   2.7e+03       4      24 ..     624     644 ..     621     645 .. 0.81
   3 ?   10.9   0.0   0.00034      0.46       5      25 ..     659     679 ..     656     681 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 10
                 HHHHHHHHHH CS
    PF13174.1  3 lyklalsyyk 12
                 l+kl +s+y 
  MMETSP0890-20130614|24529_1 90 LWKLMMSFYD 99
                 799****996 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2
                  HHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   4 yklalsyyklgdtdeAleale 24 
                  +  ++ yy   ++++Al+ ++
  MMETSP0890-20130614|24529_1 624 FEVGRFYYGIREHEKALQFYR 644
                  677888999559******997 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00034
                  HHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAlealer 25 
                  +++l++y lg+ d Ale +e+
  MMETSP0890-20130614|24529_1 659 NMGLCHYSLGQLDTALEHFEK 679
                  8*******99*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.23u 0.39s 00:00:01.62 Elapsed: 00:00:01.07
# Mc/sec: 1769.27
//
Query:       MMETSP0890-20130614|24530_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1308.54
//
Query:       MMETSP0890-20130614|24531_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   13.4   0.6       0.24   11.3   0.4    2.2  1  PF11106.3 Exopolysaccharide production protein YjbE


Domain annotation for each model (and alignments):
>> PF11106.3  Exopolysaccharide production protein YjbE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   1.7e-05      0.24      30      74 ..      54      99 ..      28     103 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.7e-05
    PF11106.3 30 aGsaats.vsvGsssatavstvssvvGvalaatGGGdGsntGtttt 74
                 + s++ s +   +s at   t s   G  l a  GGd s tG +t 
  MMETSP0890-20130614|24531_1 54 SESSSLSeMEFDASRATIDITSSHPAGSDLVARSGGDASQTGKATW 99
                 33333221446789999999**********************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.39s 00:00:01.22 Elapsed: 00:00:00.79
# Mc/sec: 1689.58
//
Query:       MMETSP0890-20130614|24533_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.80
# Mc/sec: 1231.13
//
Query:       MMETSP0890-20130614|24536_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-31  109.5   1.3    1.4e-31  109.5   0.9    2.8  3  PF03553.9 Na+/H+ antiporter family


Domain annotation for each model (and alignments):
>> PF03553.9  Na+/H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       0.3   4.1e+03     269     291 ..      39      61 ..      39      61 .. 0.91
   2 !    2.0   1.0    0.0058        79     163     261 ..     219     312 ..     204     312 .. 0.78
   3 !  109.5   0.9     1e-35   1.4e-31       2     300 ..     306     662 ..     305     663 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.3
    PF03553.9 269 tglnadhidhvsytqlpyallva 291
                  ++l+ d+  +++++++p+ l+++
  MMETSP0890-20130614|24536_1  39 SFLGGDGTLVLKDLPIPFTLYLN 61 
                  68999*************99976 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.0058
    PF03553.9 163 aililllAwgiggvleatggtesllsslakgikskgllpliifllallvafatGtswgtiiImgpiakplaaelgispkalisaveaggtlgdhlsPis 261
                  + + +++A+  gg+++  g ++   + ++k +++ +l+  ++   a++v f   + ++ ++I+g++ + + + + +s+ +l+ +v+  ++ +  + P s
  MMETSP0890-20130614|24536_1 219 L-FTIMIAGVTGGAIKSGG-VQGVANRISKIVRNSFLAQSAV-YAAGFVFFI--DDYSNVVIVGSTLRFITDVMRLSREKLSFLVDCTAAPIASVMPLS 312
                  3.44555555677777777.9999999999998666655554.455555444..899999999999999999999999999999999999999999987 PP

  == domain 3    score: 109.5 bits;  conditional E-value: 1e-35
    PF03553.9   2 avfgdksSwisdttglaagilktdlideiaahgallttipanvlaifallvvglvvlllrdvgsmlkaeaear.............eleelellk..........................lpiavllvltllgmpvtgvlalgaivkaflialafqntdvatallvgalaglivslllela..............slseldkllnrGiksMlgaililllAwgiggvleatggtesllsslakgikskgllpliifllallvafatGtswgtiiImgpiakplaaelgisp.................kalisaveaggtlgdhlsPisdttilsstglnadhidhvsytqlpyallvaavtaillvv 300
                  a  ++ s+wi++++ l++  l+ +++d  aa+ ++l +i ++++++f+l++v+ +vl+ rd+g+m+ ae++ar             +       +                          +++ ++l+++ll++     +  g  ++ ++  +++ n+d+ + l ++  +g+i+ ++l +               s  +   ++++G + M + ++ ll+A+ +++ l+++  ++++l++ +  +  ++ lp+++f+l++l afatGtswgt+++  +  + l+  l  ++                  ++i+a++ g+t+gdh+s  sdttilss + +    dh   tq pyal+ + + ail+++
  MMETSP0890-20130614|24536_1 306 ASVMPLSTWIGYEIQLIKDELDRIGYDREAAYTLFLMSIQYRFYSWFMLIFVACIVLFGRDFGPMYWAEKRARetgivtvgqeqsnT-------EeaadlippelkpnpqvppralnaaipFSLFIILFFPLLFYSGAKQAEWGGTGWNVSSRVIVGNSDSWQTLFWT--CGMILGVQLIMYavqynkdkwggmllSPGKSIHAFIAGTNTMYSGLVALLIAFVFATGLKNLL-IADYLVNALGDSLEVQTLPTVVFCLCALYAFATGTSWGTMLVFFQPSIALCVYLFQDKgdkpdkdlnnkrftdimARTIAAILGGATWGDHCSFVSDTTILSSVACGLPLWDHYL-TQMPYALI-CGINAILFGF 662
                  56799********************************************************************77777655554430.......155556677777788888999988955445555555555444444455599999*************9999964..4444444444434455799999999977888889*****************************.******************************************999888888877776677789999********99******************************9999***99.******55.5577777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.40s 00:00:01.51 Elapsed: 00:00:00.89
# Mc/sec: 2049.02
//
Query:       MMETSP0890-20130614|24539_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-08   32.6   2.8    5.4e-08   32.3   1.9    1.2  1  PF05739.14 SNARE domain
  ------ inclusion threshold ------
      0.066   13.3   1.6       0.79    9.9   1.1    2.2  1  PF05531.7  Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   1.9   7.8e-12   5.4e-08       2      56 ..       8      62 ..       7      69 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 7.8e-12
                 HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14  2 rdeeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlk 56
                 + e l++l++s++ L+++  ++ +e++eQ+ ll++ +  ++++   ++   k+++
  MMETSP0890-20130614|24539_1  8 QSESLDQLSESVSTLHRMGHEIKNELDEQNALLNDVEIGMDENLHGLSIISKQTN 62
                 7899*********************************999998776666555555 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.1   0.00012      0.79      18      56 ..      10      45 ..       2      67 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
    PF05531.7 18 dkVdalqqqvddvqenlpdvtelnekLdaqsaqLaelet 56
                 + +d l+++v  ++      +e++++Ld+q+a L+++e 
  MMETSP0890-20130614|24539_1 10 ESLDQLSESVSTLHR---MGHEIKNELDEQNALLNDVEI 45
                 334444444444444...445799999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1016  (0.0743125); expected 273.4 (0.02)
Passed bias filter:                      821  (0.0600497); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.45s 00:00:00.86 Elapsed: 00:00:00.64
# Mc/sec: 351.96
//
Query:       MMETSP0890-20130614|24534_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   23.7  24.7      5e-05   21.9  17.1    2.0  1  PF00474.12 Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> PF00474.12  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9  17.1   3.7e-09     5e-05       4     327 ..      57     377 ..      54     456 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.7e-09
   PF00474.12   4 agrsltgfvlglslaasnisaasfvGlaGavaasGlav.vllelgalllvlllllllaerlr.....nagalTlpdylskRfkgkrilvylsalslllvitlklsvdlvggaklielalGln........yetav.lllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltpdslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllp..nllaGlllavmlAaimstltslllsassaftkDlYkk 327
                  a  + +++++g+s +as ++a+ + G   ++a+  +++ ++l      ++  +l+ + + l+         +   d++  R++       +sa+s + ++ ++l ++l   +    +++G +        y+t + ++l+++t  Yt++GGl A+++td  q+++ +++ +++l+++ +          k   ++   ++++ +++    + +     lw++++   +  + + +R++aak+ k ++ g+  +  ++ ++++   + i++    + a  +   + ++ + +ay      llp       l+la       s++++l +  ++++++Dl k+
  MMETSP0890-20130614|24534_1  57 ARQQAGWYAIGISFMASGLGAWIIYGTTELGATRPISWwGVLGYSTASAMPAILICFLGPLIrkkvgAEKGFSATDFALSRYGRLM-HLQVSAISCF-YMYIYLVAELTTIGNVYATMIGKDitgtesesYTTRIaIALIVATWAYTALGGLPASIFTDKFQGII-IAAVVTMLLFATTT--------VKRNRVSR--SEFNDGTGW-FSKGFEVLVTLWIAILSAEMFNQGTWQRVFAAKSDKDMRLGFAFGALLVCIIMLF--FGIMG----MLAYSNDRESYDTFQKLAYLSFFDLLLPldRTWHFLFLALLTTLAASSVDTLQNGLAAVLSQDLVKH 377
                  44567999*************************999862345555555555555555555554644455568899*******9887.8999999987.677888888888877777777754111122226666635688999*******************975.44444444444333........33444444..556666664.6677888899*******************************98877766666655..33333....2333333344455555555555555554312233344444333334667777777777777777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.40s 00:00:01.34 Elapsed: 00:00:01.18
# Mc/sec: 1208.33
//
Query:       MMETSP0890-20130614|24541_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-27   94.6   3.8    2.3e-18   66.1   0.5    2.4  2  PF00505.14 HMG (high mobility group) box
    8.5e-15   54.8   1.8    1.8e-12   47.4   0.2    2.7  2  PF09011.5  Domain of unknown function (DUF1898)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   9.7e-11   6.6e-07       8      55 ..       2      49 ..       1      59 [. 0.89
   2 !   66.1   0.5   3.3e-22   2.3e-18       1      69 []      95     163 ..      95     163 .. 0.98

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 9.7e-11
                 HHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHH CS
   PF00505.14  8 FflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekae 55
                 F+lf+ e+++ + + nP++   e+s+++++ Wk+l +e+ + Y   ++
  MMETSP0890-20130614|24541_1  2 FMLFFCEHKDVVQQANPSAAPHEVSQIIADNWKALAPEKARAYSVLSA 49
                 9************************************99988877665 PP

  == domain 2    score: 66.1 bits;  conditional E-value: 3.3e-22
                  ---S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGGC CS
   PF00505.14   1 pkRplsaFflfskeqraklkaenPdlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeYk 69 
                  pk ++sa++ fsk++r  lk+en+ l+  +++k++g++Wk+ ++eeK+p+ee a+++k +y  e  +Yk
  MMETSP0890-20130614|24541_1  95 PKSATSAYMYFSKHHRMLLKQENSYLTFGDLGKTVGAMWKAATPEEKRPFEELAAEDKNRYVNELHDYK 163
                  7999**************************************************************997 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0018        12      12      56 ..       3      45 ..       1      59 [. 0.80
   2 !   47.4   0.2   2.6e-16   1.8e-12       1      69 [.      92     158 ..      92     159 .. 0.97

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0018
    PF09011.5 12 flFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYe 56
                 +lF  + ++  ++ +p  +    evs+ +  +Wkal  e   +Y 
  MMETSP0890-20130614|24541_1  3 MLFFCEHKDVVQQANPSAA--PHEVSQIIADNWKALAPEKARAYS 45
                 5666677777777777775..79*************999888885 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 2.6e-16
    PF09011.5   1 pkkpkrkrnAYflFvqtmrpelkregpqvpvglaevsklcsekWkalseeeKekYeekAkedkkrydre 69 
                  pk pk++++AY++F +  r  lk+e+   +  +++  k +++ Wka + eeK ++ee A+edk+ry +e
  MMETSP0890-20130614|24541_1  92 PKAPKSATSAYMYFSKHHRMLLKQENSYLT--FGDLGKTVGAMWKAATPEEKRPFEELAAEDKNRYVNE 158
                  789**************************7..*********************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       655  (0.0479081); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 1084.07
//
Query:       MMETSP0890-20130614|24544_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.51
# Mc/sec: 629.63
//
Query:       MMETSP0890-20130614|24540_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-31  108.0   0.0    1.8e-30  106.2   0.0    1.7  2  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   1.3e-34   1.8e-30     176     305 ..       1     126 [.       1     127 [. 0.98
   2 ?   -0.6   0.0     0.042   5.8e+02      46      89 ..     156     221 ..     147     271 .. 0.49

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 1.3e-34
                  EEEEEEETT..SSST---TT----------EEEEEE------HHHHHHHHHTHHHHHHHH--SEEEE----TTBTT-TT----B-----HHHHHHHHHHHH----EEEB------TTTTTT---HHHHHH CS
   PF00850.14 176 ltlSlHdyeeefyPgtgaadevgegkgkgynlniplepgtsdeeylkafekilkpllekfkpelvlvsaGfDalagDplgrlnlteegyaeltrdllelalakgkvvlvleGGYnlealaraalavlagl 305
                  +t+S+H++  e +Pgtg+ +++g ++gk+y++n+pl++g +de+++++f++++ ++++ f+p ++l+++G+D+l+gD+lg +nl+ +g+ae++  +++l+    +++++++GGY+l++++r++++ +++l
  MMETSP0890-20130614|24540_1   1 MTVSFHKFG-EYFPGTGDVHDIGYDQGKNYAINFPLHDGMDDESFYSIFKPVISKVIQVFQPGAILMQCGADSLSGDRLGCFNLSIKGHAECVAFVRSLN---IPMLVLGGGGYTLRNVPRVWTYETSVL 126
                  689****77.9******99********************************************************************************9...**********************99988 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.042
                  HHHTTS-HHHHHHHHHHH.........................HS----...........------------HHH CS
   PF00850.14  46 elllvhspeYleqleela....................sekeeelallg...........lesdtplspgsleaa 89 
                  ++++  s+eYle++++                                +           l + + + +++++a 
  MMETSP0890-20130614|24540_1 156 NMENLNSTEYLEHIKTQLfnvlkhvqpapsvqitadptI---------QgggatglptakLGAGMLAVSSTAQAT 221
                  566667777777774444555555545444332221110.........111223333333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 1008.62
//
Query:       MMETSP0890-20130614|24542_1  [L=1068]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-66  224.4   2.2    9.5e-66  222.0   1.5    1.9  1  PF00026.18 Eukaryotic aspartyl protease
  ------ inclusion threshold ------
      0.012   15.9   0.3          3    8.2   0.0    2.8  2  PF13650.1  Aspartyl protease
       0.22   11.0   4.3       0.56    9.6   3.0    1.7  1  PF02439.10 Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> PF00026.18  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0   1.5   2.1e-69   9.5e-66       2     313 ..      86     491 ..      85     492 .. 0.94

  Alignments for each domain:
  == domain 1    score: 222.0 bits;  conditional E-value: 2.1e-69
                  EEEEEEE----EEEEEEBE------EEEBTTSSCCGHHTS--B-GGG-TT-EE---B--EE-----.EE-EEEEEEEE----EEEEEEEEEEEEE-HHHHCCTS----B-E--GGG-S-B.---HHHHHHHC--CSSSEEEE---STT..----EEE---BCCCEE-EEEEEEBC..-SSS-EEEBEEEE----......EEEEEEBEEEE-----SEEE-HHHHHHHHHHH--EETS..........................................................................................SEEEETTGG-GS-EEEEETTS-EEEEEGGGGEEEC--STTSEEEESEEETT-ST--SSEEE--TTGGGEEEEEETTTTEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00026.18   2 YfgeisiGtpeqkftvifDTGSsdlWVpskkctssackshstydpskSstykkngksfsisYGdgs.vsGflsqDtvklggltvkeqefgeatkepgstflaakfdGilGlgfkeievgetatpvfdtllsqglidepvFsvylnsda..eggelvfGgvDeskykGsltyvpvt..kkgywqvelesvtvgdk......tfcssgcqailDtGTsllalpesivekiakavgaaese.........................................................................................geyvvdCsslsslpdiaftvggkkitvsaselvlkesesasaiCilglqeldvpeegelwiLGdvFlrsaytvfdldnnrvglAe 313
                  Y+++isiGtpeqkf+vi+DTGS+dlW+ s +c    c+  ++yd+skSs+y ++g+sfsi+Y+dg  vsG  s+D+++ +g ++++q f+e ++  g++f+    dG+lG++f +i+  + + + f++l++qg +d  +F++ + s +    g l++Gg++e++y  ++ yv +    +g+wq+ +++v++ +       +++ss   ai+DtGTsl++ + s+v++ia+a++a   +                                                                                          +   + +s+ + +++  +++  +++  +++      +++  +C+lg+++   ++  ++w+LGd+Fl s ytvfd+d  r+g+A+
  MMETSP0890-20130614|24542_1  86 YYADISIGTPEQKFQVILDTGSADLWIASIDCGDD-CTGLNVYDNSKSSSYISDGQSFSIEYADGDtVSGHRSYDSMHWAGTEITNQGFAEIDQ-VGEFFICGAEDGLLGMAFCSISRLG-VFTPFENLIQQGALDAGIFAFDVPSMNddVPGILTLGGINENHYINEIGYVYLAipYSGFWQILINQVNMVTGtnnikqISTSSATTAIIDTGTSLIVTTPSAVHEIANALNAICFQedgdiyivepcssfaspyavfdlivapcsfssdsspnnefldhgglqfifqdtsqnavtvnipksyllvgeedcaddefrdcagicwsnVYLSWNTDSYCDDSRYGINFNCPRFNCDNNACYPCGDDETIPYCFLGIDA---DPYIDYWLLGDTFLTSTYTVFDYDHARMGFAP 491
                  9*******************************986.*********************************************************9.9************************.9999*****************987665578******************99988777**********999865546677777788889***************************99999*************************************************************************************8766667777777888999999999****999999888888889********...899***************************96 PP

>> PF13650.1  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00066         3       8      90 .]      97     196 ..      88     196 .. 0.69
   2 ?    4.6   0.1    0.0087        40      10      31 ..     289     310 ..     282     317 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00066
    PF13650.1   8 kpvrfllDTGasgt.liseelaerl.glkpeeskip.........vlvsgaggevkarlvrldslkiggltlknvpalvld......lgaeidglLGmdf 90 
                  ++++++lDTG+  + + s +  ++  gl++ +++ +          ++  a+g++       ds+  +g +++n+ ++ +d      +    dglLGm f
  MMETSP0890-20130614|24542_1  97 QKFQVILDTGSADLwIASIDCGDDCtGLNVYDNSKSssyisdgqsFSIEYADGDTVSGHRSYDSMHWAGTEITNQGFAEIDqvgeffICGAEDGLLGMAF 196
                  799*******9877255666667665787777663333444442222234556666666666679999999999999999988777777788*****976 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0087
    PF13650.1  10 vrfllDTGasgtliseelaerl 31 
                  +++++DTG s ++ ++++++++
  MMETSP0890-20130614|24542_1 289 TTAIIDTGTSLIVTTPSAVHEI 310
                  689**********999999875 PP

>> PF02439.10  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0   0.00012      0.56       4      34 ..     935     965 ..     933     969 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00012
   PF02439.10   4 stiaIivaVvvGlaiIiicmlyYaCcYrkhr 34 
                   ti+ i a ++ l+ + +c  +++ c+r+ r
  MMETSP0890-20130614|24542_1 935 HTISVIIACLALLLFVLLCVGVFIICRRRMR 965
                  69***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      526  (0.0384728); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.73u 0.41s 00:00:02.14 Elapsed: 00:00:01.28
# Mc/sec: 1999.46
//
Query:       MMETSP0890-20130614|24548_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.80
# Mc/sec: 131.80
//
Query:       MMETSP0890-20130614|24570_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-26   90.8   0.0    9.8e-26   90.4   0.0    1.1  1  PF00962.17 Adenosine/AMP deaminase
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.037   14.0   0.0    1.5  1  PF04431.8  Pectate lyase, N terminus


Domain annotation for each model (and alignments):
>> PF00962.17  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   1.4e-29   9.8e-26      50     324 ..      19     292 ..      11     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 1.4e-29
                  ---HHHHHHHHHHHHHHH-.--HHHHHHHHHHHHHHHHH----EEEEEE-GGGG--------HHHHHHHHH-------TT---EEEEEEEEETT.......-GGGHHHHHHHHHHTBTTTEEEEEEE--TT----TT-HHHHHHHHH---EEBE-------HHHHHHHHHT...S--SEE----GGGGSHHHHHHHHHTT-EEEE-HHHHHH-----TTS--HHHHHHH..TT-EEEE--BSTTTTT--HHHHHHHHHHT----HHHHHHHHHHHHHTSSS-HHHH CS
   PF00962.17  50 fdslkefledleidvlvvrawlaqavrryayealedlaadgvvylevrfsplflatlegqltelhvvlkvkdgfdeverefkikaklilskirkk......peewleeiaelakkyrdygvvnidllgqeekepsslflkafaeagketlkltpHaGEaggaesvvealll...lgaerigHGialakdpellyllaerqiaievcPlSNvalgavaeyakhPlkeflk..dgvpvslstDDPlqfgatlseeyaiaaqalgldeedlkelarNsvksSglseeeK 324
                  ++sl +  e++  +++v+    +++++  ++++l+++a++g  y+e+r +p     l+g  te + v +++++  e++ ++   +kl+ls  r k        + +++++ l +++ d +vv++d+ g+++ +  ++ + +  ++    l++t+H +E  + ++ +  l+    l+ +r+gH   l +d    ++     ++ie+cP+SN +     ++++h ++ f +   ++ vs++tDD+++f+ +ls+e+a + +a+ l+ edl  ++r+++ sS+ ++ e+
  MMETSP0890-20130614|24570_1  19 PRSLARCFEYFCAVAKVIT--NLESLEAATRQVLTNFANEGTMYIEIRTTPKR---LNGS-TENDYVATIQRVAMEIQHKMD--VKLLLSLDRGKitsledALHTIKKLVGLSQRFSD-FVVGFDICGDPRVKSVQNYILPALYRIRPILPITFHTAEIRDDDEARAVLASakdLNIKRLGHCCYLPQDV---RRNLPSGMGIELCPTSNLVAMKIYDLTDHHFPHFWQtsSNLYVSINTDDRGLFKCSLSSELADIQKAFNLSFEDLVHIQRQGIASSFHPHPER 292
                  7899999999999******..******************************95...5555.7999*****999888876666..67777766666668655556677779999*****.****************************************998887777666777*********9999885...4666789**********9999999**********87226899************************************************987 PP

>> PF04431.8  Pectate lyase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.4e-06     0.037      22      45 ..     284     307 ..     279     314 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.4e-06
    PF04431.8  22 eaYhpdPeevtdhFnervydastd 45 
                   ++hp+Pe  +d Fn+r + ++++
  MMETSP0890-20130614|24570_1 284 SSFHPHPERLLDIFNKRLHANLEE 307
                  68*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.63s 00:00:01.01 Elapsed: 00:00:01.37
# Mc/sec: 564.98
//
Query:       MMETSP0890-20130614|24580_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-20   72.3   0.0    3.3e-20   71.7   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.092   12.6   1.9       0.32   10.9   0.1    2.1  2  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   4.8e-24   3.3e-20       3      93 ..      21     108 ..      19     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 4.8e-24
                  B---CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEE CS
   PF00254.23   3 kkakegdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevel 93 
                  ++++ ++  ++hyegkl dgtvfdssy   + ++ +   +qvik++ e+l+ m +G+k++l +p+el+Yg++g  ++kip ++ l+f++el
  MMETSP0890-20130614|24580_1  21 RHPTINSPCECHYEGKLIDGTVFDSSY--TRFATSTFAPNQVIKAWTEALQLMVEGDKWELYVPSELGYGDRGS-PPKIPGGSVLIFTIEL 108
                  55666777899***************6..556666777779*********************************.88*************8 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.7e-05      0.32     112     124 .]       1      13 [.       1      13 [. 0.96
   2 ?    1.2   0.2     0.048   3.3e+02      98     113 ..     131     146 ..     116     170 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.7e-05
   PF01346.13 112 GVktteSGLqYkv 124
                  GV+t++SGLqYk+
  MMETSP0890-20130614|24580_1   1 GVVTLPSGLQYKI 13 
                  9**********97 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.048
   PF01346.13  98 aegeaFlaenkkkeGV 113
                  ++++++l++++ ke  
  MMETSP0890-20130614|24580_1 131 DKEKQYLKKMQDKEQA 146
                  4455555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.52s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 695.28
//
Query:       MMETSP0890-20130614|24573_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-36  124.6  11.4    1.8e-14   53.5   0.0    4.1  5  PF13499.1  EF-hand domain pair
      8e-36  118.5  20.0    2.2e-07   29.5   0.3    6.3  6  PF00036.27 EF hand
    2.3e-31  104.6   6.5    1.1e-05   24.7   0.0    6.3  6  PF13405.1  EF-hand domain
      2e-24   84.8  21.7    3.4e-10   39.2   0.4    6.3  7  PF13833.1  EF-hand domain pair
    4.8e-22   76.1  14.0    0.00078   18.5   0.0    6.3  6  PF13202.1  EF hand
    2.7e-09   36.5   4.5      0.059   13.0   0.1    4.2  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
    3.4e-08   33.0   0.0    1.1e-07   31.5   0.0    1.9  2  PF00168.25 C2 domain
    8.8e-06   25.6   0.1        1.7    8.5   0.0    3.3  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
      0.039   13.7   0.4       0.89    9.4   0.0    2.7  3  PF08726.5  Ca2+ insensitive EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.7   2.6e-16   3.9e-13       4      65 ..     394     451 ..     386     452 .. 0.94
   2 !   14.1   0.1   2.2e-05     0.034      36      65 ..     515     543 ..     496     544 .. 0.76
   3 !   25.1   0.5   8.7e-09   1.3e-05       5      64 ..     523     574 ..     513     576 .. 0.87
   4 !   12.3   0.1   8.5e-05      0.13       4      29 ..     554     579 ..     552     586 .. 0.85
   5 !   53.5   0.0   1.2e-17   1.8e-14       1      63 [.     587     649 ..     587     651 .. 0.97

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.6e-16
    PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  eaF ++D d+++++  +e++++l ++g++ +d+ev+e+    ++++D +gdG++sf+Ef  +
  MMETSP0890-20130614|24573_1 394 EAFTAFDLDKNNFVGAAEIRHVLINIGEQVTDDEVDEM----IRMIDRDGDGQVSFPEFFDM 451
                  58*************************99999999999....*****************987 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.2e-05
    PF13499.1  36 eevrevldyifkelDkngdGvlsfeEflqa 65 
                  e+++++ ++ f+  Dk+++G ++++Ef+++
  MMETSP0890-20130614|24573_1 515 ESIKKS-YKRFQATDKDKSGMIDYTEFCEI 543
                  555554.45599999999999999999987 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 8.7e-09
    PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64 
                  +F++ Dkd++g +d++e+ ++l+         +   + +++f+ +D +++G+++  Ef+ 
  MMETSP0890-20130614|24573_1 523 RFQATDKDKSGMIDYTEFCEILQV--------DPSPQGERLFQLFDYDRSGQIDVREFMI 574
                  7*********************74........444566899*****************86 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 8.5e-05
    PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhl 29 
                  ++F+l+D d++g++d+ e++ +l ++
  MMETSP0890-20130614|24573_1 554 RLFQLFDYDRSGQIDVREFMIALSNF 579
                  67999999999999999999888765 PP

  == domain 5    score: 53.5 bits;  conditional E-value: 1.2e-17
    PF13499.1   1 klkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                  klk aF  +D dg+g ++k eL+r+l++ +   sd ev + ++ i++++Dk+gdGv++f+Ef+
  MMETSP0890-20130614|24573_1 587 KLKFAFMIFDEDGNGVITKGELTRILRANHMASSDAEVARKAETIMQQADKDGDGVVTFDEFV 649
                  6899**********************************************************6 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.4e-05     0.036       1      27 [.     391     417 ..     391     419 .. 0.91
   2 !   29.5   0.3   1.5e-10   2.2e-07       1      27 [.     427     453 ..     427     455 .. 0.94
   3 !   20.6   0.0     1e-07   0.00016       6      27 ..     524     545 ..     521     546 .. 0.91
   4 !   20.4   0.1   1.2e-07   0.00018       4      28 ..     554     578 ..     553     579 .. 0.91
   5 !   22.0   0.1   3.6e-08   5.5e-05       2      27 ..     588     613 ..     587     615 .. 0.93
   6 !   23.5   0.2   1.3e-08   1.9e-05       3      27 ..     629     653 ..     627     655 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.4e-05
                  HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                  e+ eaF  fD D++ ++   E +++l 
  MMETSP0890-20130614|24573_1 391 EIWEAFTAFDLDKNNFVGAAEIRHVLI 417
                  6889*******************9986 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.5e-10
                  HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                  e++e+++++D+DgdG++sf Ef ++++
  MMETSP0890-20130614|24573_1 427 EVDEMIRMIDRDGDGQVSFPEFFDMVT 453
                  79**********************986 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 1e-07
                  HHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   6 FkefDkDgdGkIsfeEfkealk 27 
                  F+  DkD++G I++ Ef+e+l+
  MMETSP0890-20130614|24573_1 524 FQATDKDKSGMIDYTEFCEILQ 545
                  9999***************985 PP

  == domain 4    score: 20.4 bits;  conditional E-value: 1.2e-07
                  HHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   4 eaFkefDkDgdGkIsfeEfkealkk 28 
                  ++F++fD D++G+I++ Ef+ al++
  MMETSP0890-20130614|24573_1 554 RLFQLFDYDRSGQIDVREFMIALSN 578
                  79******************99976 PP

  == domain 5    score: 22.0 bits;  conditional E-value: 3.6e-08
                  HHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealk 27 
                  lk aF +fD Dg+G I++ E+ ++l+
  MMETSP0890-20130614|24573_1 588 LKFAFMIFDEDGNGVITKGELTRILR 613
                  899********************997 PP

  == domain 6    score: 23.5 bits;  conditional E-value: 1.3e-08
                  HHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  + +++ +DkDgdG ++f+Ef+ + k
  MMETSP0890-20130614|24573_1 629 ETIMQQADKDGDGVVTFDEFVIVSK 653
                  679*****************97655 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.6e-06    0.0024       1      27 [.     391     417 ..     391     420 .. 0.92
   2 !   12.3   0.0   6.9e-05      0.11       4      27 ..     430     453 ..     427     460 .. 0.86
   3 !   13.5   0.0     3e-05     0.046       4      27 ..     522     545 ..     520     549 .. 0.91
   4 !   21.5   0.1     8e-08   0.00012       4      27 ..     554     577 ..     553     581 .. 0.92
   5 !   24.7   0.0   7.3e-09   1.1e-05       2      27 ..     588     613 ..     587     620 .. 0.92
   6 !   12.5   0.0   6.2e-05     0.094       8      25 ..     634     651 ..     629     658 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.6e-06
                  HHH---GCC-------B---HHHHHHH CS
    PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLr 27 
                  e+ eaF++fD d+++++ a+E+r++L 
  MMETSP0890-20130614|24573_1 391 EIWEAFTAFDLDKNNFVGAAEIRHVLI 417
                  689*********************995 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.9e-05
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  e  +++D+dgdG++++ E+ d+ +
  MMETSP0890-20130614|24573_1 430 EMIRMIDRDGDGQVSFPEFFDMVT 453
                  55689**************98865 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 3e-05
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  + F++ Dkd++G id  E+  +L+
  MMETSP0890-20130614|24573_1 522 KRFQATDKDKSGMIDYTEFCEILQ 545
                  579999***************997 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 8e-08
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  ++F+lfD+d++G+id  E++ aL+
  MMETSP0890-20130614|24573_1 554 RLFQLFDYDRSGQIDVREFMIALS 577
                  79******************9998 PP

  == domain 5    score: 24.7 bits;  conditional E-value: 7.3e-09
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  l+ aF++fD dg+G i++ EL ++Lr
  MMETSP0890-20130614|24573_1 588 LKFAFMIFDEDGNGVITKGELTRILR 613
                  789**********************9 PP

  == domain 6    score: 12.5 bits;  conditional E-value: 6.2e-05
                  CC-------B---HHHHH CS
    PF13405.1   8 lfDkdgdGkidaeELrda 25 
                  + DkdgdG ++++E++ +
  MMETSP0890-20130614|24573_1 634 QADKDGDGVVTFDEFVIV 651
                  56*************865 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.8   4.3e+03       8      20 ..     188     201 ..     187     206 .. 0.85
   2 !    5.2   0.0    0.0095        14      22      45 ..     387     410 ..     379     417 .. 0.85
   3 !   39.2   0.4   2.2e-13   3.4e-10       8      52 ..     410     453 ..     406     455 .. 0.85
   4 !   11.9   0.0   7.8e-05      0.12      31      52 ..     524     545 ..     524     546 .. 0.86
   5 !    9.4   0.1   0.00047      0.71      29      49 ..     554     574 ..     553     579 .. 0.89
   6 !    7.1   0.1    0.0023       3.5      22      43 ..     583     604 ..     574     605 .. 0.83
   7 !   31.5   0.1   5.9e-11   8.9e-08       2      48 ..     600     649 ..     599     654 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.8
    PF13833.1   8 eeLkral.allglk 20 
                   +L+ +l +++glk
  MMETSP0890-20130614|24573_1 188 GSLQVNLlRAVGLK 201
                  68999**9*99987 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0095
    PF13833.1  22 lseeevdilfrefDtdgdGkisfe 45 
                  +++ee+ + f +fD+d+++ ++ +
  MMETSP0890-20130614|24573_1 387 FTDEEIWEAFTAFDLDKNNFVGAA 410
                  99***************9977655 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 2.2e-13
    PF13833.1   8 eeLkral.allglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                  +e ++ l + +g + ++++evd+++r++D+dgdG +sf EF ++++
  MMETSP0890-20130614|24573_1 410 AEIRHVLiN-IGEQ-VTDDEVDEMIRMIDRDGDGQVSFPEFFDMVT 453
                  566666644.4999.****************************986 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 7.8e-05
    PF13833.1  31 frefDtdgdGkisfeEFcvlle 52 
                  f + D d++G+i++ EFc+ l+
  MMETSP0890-20130614|24573_1 524 FQATDKDKSGMIDYTEFCEILQ 545
                  56679*************8776 PP

  == domain 5    score: 9.4 bits;  conditional E-value: 0.00047
    PF13833.1  29 ilfrefDtdgdGkisfeEFcv 49 
                   lf +fD d++G i+  EF+ 
  MMETSP0890-20130614|24573_1 554 RLFQLFDYDRSGQIDVREFMI 574
                  59*****************96 PP

  == domain 6    score: 7.1 bits;  conditional E-value: 0.0023
    PF13833.1  22 lseeevdilfrefDtdgdGkis 43 
                  ++++++   f  fD dg+G i+
  MMETSP0890-20130614|24573_1 583 TKDDKLKFAFMIFDEDGNGVIT 604
                  567779999***********98 PP

  == domain 7    score: 31.5 bits;  conditional E-value: 5.9e-11
    PF13833.1   2 kGlItreeLkralallglkg..lseee.vdilfrefDtdgdGkisfeEFc 48 
                  +G+It+ eL r+l++ ++ +   +    +++++  +D dgdG ++f+EF+
  MMETSP0890-20130614|24573_1 600 NGVITKGELTRILRANHMASsdAEVARkAETIMQQADKDGDGVVTFDEFV 649
                  8************77799966766665689*******************8 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0097        15       4      24 ..     395     415 ..     394     416 .. 0.85
   2 !   17.0   0.1   1.6e-06    0.0024       4      22 ..     431     449 ..     428     452 .. 0.84
   3 !   10.4   0.0   0.00019      0.28       4      21 ..     523     540 ..     521     544 .. 0.91
   4 !   17.1   0.1   1.5e-06    0.0022       4      22 ..     555     573 ..     553     577 .. 0.90
   5 !   12.7   0.1   3.5e-05     0.053       4      24 ..     591     611 ..     588     612 .. 0.88
   6 !   18.5   0.0   5.1e-07   0.00078       5      21 ..     632     648 ..     628     654 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0097
                  HHHHH--S----B-HHHHHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreELkrl 24 
                  +F afDl++  ++ + E + +
  MMETSP0890-20130614|24573_1 395 AFTAFDLDKNNFVGAAEIRHV 415
                  49********99999998875 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.6e-06
                  HHHHH--S----B-HHHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreELk 22 
                  + r +D +gDG++s+ E+ 
  MMETSP0890-20130614|24573_1 431 MIRMIDRDGDGQVSFPEFF 449
                  6799*************95 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00019
                  HHHHH--S----B-HHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                   F+a D++++G I+  E+
  MMETSP0890-20130614|24573_1 523 RFQATDKDKSGMIDYTEF 540
                  49*************998 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 1.5e-06
                  HHHHH--S----B-HHHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreELk 22 
                  +F+ fD +++G+I+  E++
  MMETSP0890-20130614|24573_1 555 LFQLFDYDRSGQIDVREFM 573
                  7****************95 PP

  == domain 5    score: 12.7 bits;  conditional E-value: 3.5e-05
                  HHHHH--S----B-HHHHHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreELkrl 24 
                  +F  fD +g G I++ EL r+
  MMETSP0890-20130614|24573_1 591 AFMIFDEDGNGVITKGELTRI 611
                  499***************984 PP

  == domain 6    score: 18.5 bits;  conditional E-value: 5.1e-07
                  HHHH--S----B-HHHH CS
    PF13202.1   5 FrafDlNgDGkIsreEL 21 
                   +++D++gDG ++++E+
  MMETSP0890-20130614|24573_1 632 MQQADKDGDGVVTFDEF 648
                  69**************9 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.9e-05     0.059      10      66 ..     390     449 ..     385     454 .. 0.86
   2 !    9.1   0.1    0.0006      0.92       7      69 ..     515     576 ..     511     580 .. 0.75
   3 !   11.1   0.0   0.00014      0.22      24      70 ..     601     653 ..     585     662 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.9e-05
    PF12763.2  10 kkyweifsglk.pednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefc 66 
                  ++ we f + + +++n +   ++  vl n   ++++d+++++  + d d dg++ f ef 
  MMETSP0890-20130614|24573_1 390 EEIWEAFTAFDlDKNNFVGAAEIRHVLINigEQVTDDEVDEMIRMIDRDGDGQVSFPEFF 449
                  568*****99845788899999*****9954689************************95 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0006
    PF12763.2   7 leikkyweifsglk.pednkltgdkvapvlknskleedklekiwdladidedgkldfeefciam 69 
                    ikk ++ f++ + +++ ++   +   +l+    ++ + e++++l d d  g++d  ef+ia+
  MMETSP0890-20130614|24573_1 515 ESIKKSYKRFQATDkDKSGMIDYTEFCEILQVD--PSPQGERLFQLFDYDRSGQIDVREFMIAL 576
                  567777777777651455667777888888765..45677899*****************9987 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00014
    PF12763.2  24 nkltgdkvapvlknskleed......klekiwdladidedgkldfeefciamr 70 
                    +t+ +++ +l+  ++ ++      k e i + ad d dg + f+ef+i+ +
  MMETSP0890-20130614|24573_1 601 GVITKGELTRILRANHMASSdaevarKAETIMQQADKDGDGVVTFDEFVIVSK 653
                  5566666666666555543211111266889******************9865 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   6.9e-11   1.1e-07       1      84 [.     190     270 ..     190     271 .. 0.85
   2 ?   -3.2   0.0       4.4   6.7e+03      66      77 ..     555     566 ..     541     573 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 6.9e-11
                  EEEEEEEESS--S-S.TSSSS-EEEEEEEECTTEEEEEE--BSS-.SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSCSEE---E CS
   PF00168.25   1 LkvkvieAknLpnkd.kngtsdpyvkvslggakskkkrTrviknt.lnPvWnekftfevvaeelaeleleVkdedrfgkddflGea 84 
                  L+v++++A +L++ + + g+ dpy k+++g    + + ++ +     +P+Wn + +fe      +e+ +e++d++++g+d+f+G+a
  MMETSP0890-20130614|24573_1 190 LQVNLLRAVGLKAGQsMYGKADPYTKLTVGT---QVFSSNPHIGGgKDPIWNAEHVFE--ISTEKEMLVEIFDKETVGSDKFMGQA 270
                  789*********9777889************...556776666666************..44445567****************98 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.4
                  EEEEEECHSSSC CS
   PF00168.25  66 eleVkdedrfgk 77 
                   ++++d+dr g+
  MMETSP0890-20130614|24573_1 555 LFQLFDYDRSGQ 566
                  599999999985 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0011       1.7      43     111 ..     378     449 ..     344     451 .. 0.78
   2 ?    5.1   0.0     0.013        20      39     111 ..     504     573 ..     490     575 .. 0.78
   3 !    8.0   0.0    0.0016       2.4      53     110 ..     585     648 ..     577     650 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0011
    PF10591.4  43 eaekknskeckeaveWk.FnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                  ea ++   +++++  W+ F  +D +k++++  +E++++  ++     +  ++e++++ D d d+++s+ E+ 
  MMETSP0890-20130614|24573_1 378 EARRDPAGKFTDEEIWEaFTAFDLDKNNFVGAAEIRHVLINIgeQVTDDEVDEMIRMIDRDGDGQVSFPEFF 449
                  444444445555555644******************9988876555677799******************96 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.013
    PF10591.4  39 elekeaekknskeckeaveWkFnqlDtnkdkvlsksElaplraplvklehCikeffksCDadkdkkisleEWc 111
                  +  +++++ + +++k++ + +F+  D++k ++++ +E+ ++ +         +++f+  D d+ ++i+++E++
  MMETSP0890-20130614|24573_1 504 DDFARDCNLKPESIKKSYK-RFQATDKDKSGMIDYTEFCEILQV--DPSPQGERLFQLFDYDRSGQIDVREFM 573
                  5555666666666666654.799999999999999999999986..89999999****************997 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0016
    PF10591.4  53 keaveWkFnqlDtnkdkvlsksElaplrapl......vklehCikeffksCDadkdkkisleEW 110
                  ++++++ F  +D + ++v++k El+ + +         ++ +  ++ ++++D d d+ ++++E+
  MMETSP0890-20130614|24573_1 585 DDKLKFAFMIFDEDGNGVITKGELTRILRANhmassdAEVARKAETIMQQADKDGDGVVTFDEF 648
                  67899*******************9875433245545566677899****************99 PP

>> PF08726.5  Ca2+ insensitive EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00058      0.89       4      52 ..     388     440 ..     386     450 .. 0.80
   2 ?    0.8   0.0      0.28   4.3e+02      38      66 ..     519     543 ..     509     545 .. 0.63
   3 ?   -2.2   0.0       2.5   3.8e+03       7      33 ..     587     614 ..     583     625 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00058
    PF08726.5   4 saeqveeaFralaegK.pYvTeedLraallp..eqa.eyllerMpeysgpegd 52 
                  + e++ eaF a   +K ++v + ++r+ l++  eq+ +  +++M ++ + +gd
  MMETSP0890-20130614|24573_1 388 TDEEIWEAFTAFDLDKnNFVGAAEIRHVLINigEQVtDDEVDEMIRMIDRDGD 440
                  88**********888879**********9864477777777777777766644 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.28
    PF08726.5  38 yllerMpeysgpegdetegayDYesFlek 66 
                  +  +r + +     + ++g  DY++F+e 
  MMETSP0890-20130614|24573_1 519 KSYKRFQATD----KDKSGMIDYTEFCEI 543
                  4444444444....3457889*****985 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.5
    PF08726.5   7 qveeaFral.aegKpYvTeedLraallp 33 
                   ++ aF +  ++g   +T+ +L + l +
  MMETSP0890-20130614|24573_1 587 KLKFAFMIFdEDGNGVITKGELTRILRA 614
                  5677899998888899999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.12u 0.40s 00:00:01.52 Elapsed: 00:00:00.87
# Mc/sec: 1831.70
//
Query:       MMETSP0890-20130614|24587_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-15   56.0   0.0    7.8e-15   55.2   0.0    1.3  1  PF00175.16 Oxidoreductase NAD-binding domain
    1.1e-05   25.3   0.0    1.9e-05   24.5   0.0    1.3  1  PF00970.19 Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.1e-18   7.8e-15       3     102 ..     149     244 ..     147     248 .. 0.93

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.1e-18
                  E-----HHHHHHHHHHHCCHCCCEEEEEEEESSGGGSTTHHHHHHHHHHSTTEEEEEEC.TTTTCSSSSBB--HHHHHHHCHHHHHHCTTTEEEEEE-HHH CS
   PF00175.16   3 aGGtGiaplrsvlkallededetkvvlvyGvrteedlllreeleelakklpgrlkvvav.srtddgwkggkgyvtdalleelleeeidkeetdvyvCGppg 102
                  a GtGiap+rs +++ ++   +++++l+yGv++ +   + +++e++ + ++  ++v++v s+++++w+g +gyv++ l+++  +     +++ +++CG++ 
  MMETSP0890-20130614|24587_1 149 AQGTGIAPIRSAIEHSIAVGLPQPATLYYGVQNAATRAYGDKFESWTNDYN--VNVIEVhSKPEQNWSGPTGYVQESLKRNGVK---VPRNAGAIICGNKD 244
                  66***************889**************************98884..89***********************999999...5789*******986 PP

>> PF00970.19  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.8e-09   1.9e-05       2      96 ..      29     118 ..      28     120 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.8e-09
                  EEEEEEEESSSSEEEEEEE-SSTT-B-------EEEEEEE..--EEEEEEE.SSSTT.EE-EEEEEEE------HHHHHHC-----EEEEE-EE-- CS
   PF00970.19   2 aklvekeelshdvrlfrlklpsedqvlglpvGqyvflrlpiegeevvRaYspassps.ekgelellvkvvpgGkmsqyldelkvgdtlelkGPlGk 96 
                  +++ +kee  +d  +f++ +p+e ++ +  +Gq+v +++    e+    Y +as+p+ e+ e+e+l+k  ++    q+l+  k+ + +e++G  Gk
  MMETSP0890-20130614|24587_1  29 VEILSKEEAGKDLYTFSISIPEELAKDFNVPGQFVQIKVG---ENKPGFYAIASAPNaERREFEFLIKATEN---NQWLTTSKPTNIVEMSGVAGK 118
                  57899****************9999988888**8888887...445799*******758999********55...699999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 1142.55
//
Query:       MMETSP0890-20130614|24594_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-19   69.2   0.0    1.9e-19   69.0   0.0    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   1.4e-23   1.9e-19       1      58 []      11      71 ..      11      71 .. 0.96

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 1.4e-23
    PF08373.5  1 ieidGpthFyrns.gvll..gktklKrriLtalGwkvisipyfeWnelqgkeekldYlkei 58
                 ie+dGp+h+++   +++   gktk+K r+L++lGw +i++pyfeW  l     k  Yl+e+
  MMETSP0890-20130614|24594_1 11 IEVDGPSHYLKGDiTRMShnGKTKFKSRLLRQLGWTIIHVPYFEWDVLTCAAAKDSYLQEK 71
                 9************999889*****************************99999999**986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 311.11
//
Query:       MMETSP0890-20130614|24591_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-45  153.5   0.0    4.7e-45  153.3   0.0    1.0  1  PF02115.12 RHO protein GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> PF02115.12  RHO protein GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.0   3.4e-49   4.7e-45      27     199 ..      13     193 .]       2     193 .] 0.92

  Alignments for each domain:
  == domain 1    score: 153.3 bits;  conditional E-value: 3.4e-49
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XSSXTTS-.SEEE---EEE-TT--.--B------..GGGGGGSEEEEE---EEEEEEEEEEESSEB--EEEEEEEEE---EEEEEEEE---B-EESSEEEEE---E...E--B--TT---EEEEEEEEETTS-ESEEEEEEEEEES CS
   PF02115.12  27 ykpppkkslkeikelDkeDeSLrkyKekLLGele..vvedpkep.nVkvtkltllveeap.eieldLtgd..lkelkkklfvlkEgseYrlkisfkVqreivsGLkyvqkvyraglrvdktkemlGsyaPkaeeyeyvtpee...eaPkGvlaRGsYsvkskftDDDkkdhlelewsleikk 199
                  y ++  + ++ +++ D++DeSLrkyKe+LLG +   ++ d+++p + +vt++ ++ ++++ +i++ L     +  lk++ +++kEg+eY+ +isf+Vq+ei  GLk+ +k+++ g++ +  + m+GsyaP++ ++ ++ p     +aPkG++ RG+Y+ + kf+D D  +hle+ + l+i+k
  MMETSP0890-20130614|24591_1  13 YSQAGTNDVSALLKTDADDESLRKYKEQLLGAAAqgDLGDKNDPrKLIVTEFRVMFNNSTpDIVFSLDSMagMMLLKENGMSIKEGIEYKFRISFRVQHEILNGLKFCNKIKKMGVT-NSDDLMIGSYAPQSAPHVFEFPRHgwmDAPKGMMYRGNYTSQDKFVDSDGVTHLEYSYPLKITK 193
                  889999999***********************99899*******9**********999888***9998774477899**************************************97.77899**************999864447**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.79
# Mc/sec: 585.44
//
Query:       MMETSP0890-20130614|24610_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   11.9   0.0        0.1   11.8   0.0    1.1  1  PF13315.1 Protein of unknown function (DUF4085)
       0.15   12.1   0.5          1    9.4   0.3    1.9  2  PF14129.1 Domain of unknown function (DUF4296)


Domain annotation for each model (and alignments):
>> PF13315.1  Protein of unknown function (DUF4085)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.5e-05       0.1      80     127 ..      36      83 ..      11      95 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.5e-05
    PF13315.1  80 klkklllewkedyekefeklldeyiehyesiakklpanvkqlfevslH 127
                   + +++  +   +  ef++ + +y ++ ++++  +p++ kq +++ l 
  MMETSP0890-20130614|24610_1  36 VISDIYSSFGWSVSPEFKQNMIDYLDRNKNARSTIPPHLKQFHNYTLQ 83 
                  5566677777778889*****************************985 PP

>> PF14129.1  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.052   3.5e+02      21      62 ..      19      61 ..      10      70 .. 0.68
   2 ?    9.4   0.3   0.00015         1      36      65 ..      75     105 .]      55     105 .] 0.82

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.052
    PF14129.1 21 eamagsneksekekklaykkailkkygid.saqfdsslvYYar 62
                 +++a++  ++  +  +a+ ++i+  +g + s +f++++  Y +
  MMETSP0890-20130614|24610_1 19 NQVANVTFQNLLKDPIAVISDIYSSFGWSvSPEFKQNMIDYLD 61
                 4455566667777778888888888887646688888765544 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00015
    PF14129.1  36 laykkailkkygidsaqfdssl.vYYarhpe 65 
                  ++++++ l+ yg+d+a  ++ + +YYarh++
  MMETSP0890-20130614|24610_1  75 KQFHNYTLQEYGLDRAVVRRHMaDYYARHLD 105
                  6778999***********998846****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.31s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 387.10
//
Query:       MMETSP0890-20130614|24630_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.78
# Mc/sec: 546.86
//
Query:       MMETSP0890-20130614|24638_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-45  152.6   0.0    7.3e-45  152.4   0.0    1.1  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.4   0.0   5.3e-49   7.3e-45      29     187 ..       4     159 ..       1     162 [. 0.95

  Alignments for each domain:
  == domain 1    score: 152.4 bits;  conditional E-value: 5.3e-49
                  TEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEE CS
   PF00227.21  29 kllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvev 187
                   l+++++ eKi+kiddhi+  +aGl++Da++l++ ar  aq+y + y+ pi+ve+lv+r+++ +q ytq++g+rpfgv +l+ag+d + g q+y  dpsG+++++k a++ G +++a ++ll+++y++dl+le+   la+k+l +++e  +++++n+++
  MMETSP0890-20130614|24638_1   4 LLQAPKSSEKIYKIDDHIATIVAGLTSDANILIDEARLAAQRYDYAYDNPIPVEQLVQRVCNHKQLYTQYGGQRPFGVKFLFAGYDSHLGFQIYVSDPSGTYSGWK-ATSLGQNANAGQSLLKQEYSPDLNLEQSTFLALKVLDKTME--SVTSDNLDL 159
                  56778889*************************************************************************************************8.*****99**********************************..677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.64
# Mc/sec: 756.35
//
Query:       MMETSP0890-20130614|24663_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-09   36.1   0.3    6.6e-09   35.8   0.2    1.2  1  PF07386.6 Protein of unknown function (DUF1499)


Domain annotation for each model (and alignments):
>> PF07386.6  Protein of unknown function (DUF1499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   4.8e-13   6.6e-09      84     117 ..       8      41 ..       1      42 [. 0.84

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 4.8e-13
    PF07386.6  84 dpdearidvRSaSRvGksDlGvNrkRiealraal 117
                  ++++a++ +RS SRvG+ D+GvN+kR++ + ++l
  MMETSP0890-20130614|24663_1   8 QDNSAILRLRSSSRVGYLDFGVNAKRLNYFASRL 41 
                  34455***********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.89
# Mc/sec: 193.86
//
Query:       MMETSP0890-20130614|24665_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       102  (0.0074605); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.87
# Mc/sec: 129.46
//
Query:       MMETSP0890-20130614|24687_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-24   85.9   0.0    2.6e-24   85.7   0.0    1.0  1  PF00155.16 Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   1.9e-28   2.6e-24     208     363 .]      34     204 ..       4     204 .. 0.91

  Alignments for each domain:
  == domain 1    score: 85.7 bits;  conditional E-value: 1.9e-28
                  HH-S-EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC.....-TCHHHH-.---EE-----HH.................HHHCCH---BE--........---EE-----TTTHHHHHHHH CS
   PF00155.16 208 eeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.....glkvlasq.sgmflltdlsae...........takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                  +++  +++ +++sKa++++G+R+Gy+++ a v+ +  k++ +++s  ssl+qaa+ aal+ +++    l+  ++++ +rr+++  +L+++      l++ + + ++++ll d+sa+           + + ++ +Lle  +++++pg  f++p+ +Ri++ + ++ +le++++al
  MMETSP0890-20130614|24687_1  34 DAYARTVTINGFSKAYAMTGFRLGYLAAPAPVAAACGKIQGQITScaSSLAQAAAIAALNLPQD---ALDPQVAEFRRRRDYVLTRLEKIasltgTLECPPAPkGAFYLLPDISAAfgatvgnrhisDSTTFCAALLEARKLALVPGDAFGAPSAIRISY-AADQTTLEKAMDAL 204
                  344449********************************************************97...9***************************9***99988**********************99999999**************************.99********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 616.21
//
Query:       MMETSP0890-20130614|24695_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00026   20.9   0.3    0.00033   20.5   0.2    1.1  1  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
     0.0072   16.0   0.3     0.0084   15.8   0.2    1.1  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
  ------ inclusion threshold ------
       0.84    7.8   3.0       0.93    7.6   2.0    1.1  1  PF05616.8  Neisseria meningitidis TspB protein
          4    6.1   7.4        4.9    5.8   5.1    1.0  1  PF13388.1  Protein of unknown function (DUF4106)
        9.4    5.9   6.7         12    5.5   4.6    1.1  1  PF01034.15 Syndecan domain


Domain annotation for each model (and alignments):
>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.2e-07   0.00033      57     131 ..      13      99 ..       2     100 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.2e-07
    PF04695.8  57 aateaaqstsesstpsdnysnqsssssststpqsqqsyyqqppplv.per............dwrdllimataaaglgyglykltkry 131
                  ++ ++a+ +++++ +++++ +++++++ ++tp ++  ++ +p p + ++r             wr++l+ +t+a++++++  ++ ++y
  MMETSP0890-20130614|24695_1  13 KS-ARATVKQTPRPTQQTTPRPTPQPTPRPTPVPSIRPTLAPVPRPvSARkrskdatseygaGWRSFLFWLTIAGAIAVAFGYFRQNY 99 
                  12.2222222222222333333333333344444444444444443334478**************************9999888887 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   3.1e-06    0.0084      69     106 ..      20      57 ..       3      92 .. 0.40

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.1e-06
    PF05887.6  69 etepeeegeeetepeeegeeetepeeeeepepepetep 106
                  +  p ++ +  + p +++ + + p +   p   p + p
  MMETSP0890-20130614|24695_1  20 KQTPRPTQQTTPRPTPQPTPRPTPVPSIRPTLAPVPRP 57 
                  22222222222222222222222222222222222222 PP

>> PF05616.8  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.0   0.00034      0.93     344     387 ..      20      57 ..       4      84 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00034
    PF05616.8 344 nedpdendgtrpnpepdpdlnpdanpdtdgqpgtrpdspavpdr 387
                  ++ p+  ++t p+p+p+p   p +       p  rp    vp  
  MMETSP0890-20130614|24695_1  20 KQTPRPTQQTTPRPTPQPTPRPTPV------PSIRPTLAPVPRP 57 
                  4455555555555555555555444......3344443333433 PP

>> PF13388.1  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.1    0.0018       4.9     205     261 ..       6      66 ..       2      73 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0018
    PF13388.1 205 qqptvqnpaqqptvqnpaqqvqqpaqqptvqpaqqptvqnpa.....qqqpqteqghkrsre 261
                   +pt ++ + + tv+++ + +qq++ +pt+qp+ +pt+  p+     +  p+   + krs++
  MMETSP0890-20130614|24695_1   6 SDPTNNDKSARATVKQTPRPTQQTTPRPTPQPTPRPTPV-PSirptlAPVPRPVSARKRSKD 66 
                  578888888899998888888888888888888777765.3322223445566666666665 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.6    0.0043        12      95     157 ..       6      67 ..       2      74 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0043
   PF01034.15  95 ststktsstvsttttattsPsetateeatttvatetatevqsaaepeqpttpatdedldteve 157
                  s++t++ +++++t+++t++P++++t +++t ++t ++t+v+s  +   p + + +  ++ ++ 
  MMETSP0890-20130614|24695_1   6 SDPTNNDKSARATVKQTPRPTQQTT-PRPTPQPTPRPTPVPSIRPTLAPVPRPVSARKRSKDA 67 
                  6677788888888999999987765.6677999999999996555555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 491.25
//
Query:       MMETSP0890-20130614|24694_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-27   94.1   0.0    1.1e-26   93.7   0.0    1.2  1  PF00480.15 ROK family
     0.0011   17.7   1.0       0.03   13.0   0.7    2.2  1  PF02685.11 Glucokinase


Domain annotation for each model (and alignments):
>> PF00480.15  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   1.5e-30   1.1e-26       2     179 .]       2     190 ..       1     190 [. 0.83

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 1.5e-30
   PF00480.15   2 idlGgtkielalvd..eegeilkrekvptpttpeellealvdlvekaeeqfgevgvgigvpGivnkdq.....gtivstPnikwadvdlvkkleerl..nvpvvlendanaaalaEkvfgaakdvsnviyvtigtGiGaGviingklirG.angeaGeig......hillden....gekcgCgnkgClEtiaSgral 179
                  ++ Gg + ++al +  + ++i++re ++t  +pee+l+++ + + +  ++f   ++gi+++G++++       g+i+stP+++w+d+d+v  l  +l  n+pv++++d+na alaE ++  +k++s++ y+t+gtG+G G ++ngk ++G  ++eaG++        +    +        +C n   +E++++ ral
  MMETSP0890-20130614|24694_1   2 VEGGGSSWVCALAKngDPSKIVEREVYETSGNPEETLSKVAEWLRT--RSFC--SLGIASFGPIDPAIdsktyGYITSTPKPGWQDTDVVGRLTRDLpkNIPVRFDTDVNAPALAEFYD-PKKKISSLAYITVGTGVGVGLVVNGKTVHGlLHPEAGHVSvprypnDT----MdvsdLSMFDCQNWTEVEAVVASRAL 190
                  56777777777654116789*******************9999975..4555..9*********998777899**********************99889*****************95.5669***********************************966544322....13434445566666668888888876 PP

>> PF02685.11  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.7   4.4e-06      0.03     127     173 ..     121     167 ..     111     253 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.4e-06
   PF02685.11 127 eapiavlGaGTGLGvallikekerrvvlasEGGhvdfapeseeevel 173
                   +++a +  GTG Gv+l+++ k+ +  l  E+Ghv+ +   +  + +
  MMETSP0890-20130614|24694_1 121 ISSLAYITVGTGVGVGLVVNGKTVHGLLHPEAGHVSVPRYPNDTMDV 167
                  566788999**************999**********98766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.79
# Mc/sec: 1034.38
//
Query:       MMETSP0890-20130614|24719_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.55
# Mc/sec: 370.35
//
Query:       MMETSP0890-20130614|24715_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   13.5   0.0      0.086   12.4   0.0    1.6  1  PF05903.9 PPPDE putative peptidase domain


Domain annotation for each model (and alignments):
>> PF05903.9  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.3e-06     0.086      59     128 ..     108     178 ..      51     198 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.3e-06
    PF05903.9  59 elkpkttsegakfresi.elgeTevteeevreil.eelsaeyhgdkYnLiskNCnhFtddlvdlLtgkkiPk 128
                  + +pk+   + k+r +  +++  +v+ +  +e l + + ++ h++  +++++ C +F++dl++ L + k+  
  MMETSP0890-20130614|24715_1 108 KMDPKR-GFYLKWRVCFrHIDLRQVPASLLQETLeRTIISKLHPEGFDFFGHCCYNFAEDLLQELDQLKFEV 178
                  666666.33334443333455555555566666656666778999********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.90
# Mc/sec: 1025.11
//
Query:       MMETSP0890-20130614|24724_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 784.26
//
Query:       MMETSP0890-20130614|24725_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-08   32.7   0.0    1.2e-07   31.4   0.0    1.7  1  PF13558.1  Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.18   11.6   0.0    1.3  1  PF13304.1  AAA domain
       0.16   10.8   0.0       0.25   10.2   0.0    1.2  1  PF00154.16 recA bacterial DNA recombination protein


Domain annotation for each model (and alignments):
>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   2.7e-11   1.2e-07      23      89 ..     104     172 ..      81     173 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2.7e-11
    PF13558.1  23 ekelsrrtgtlSGGEkqflvylalaaAlaalyssae..g.repsirlvfLDEAFsklDeeniasllellr 89 
                  +k+++ ++g lSGG++  l+yl  a+A   + ++++  +  +p++++++LDEAF+ lD++ + ++l+l+r
  MMETSP0890-20130614|24725_1 104 RKNTEITCGVLSGGQR-HLIYLLRALAPIFIAGNRSrtNlFQPRVDILLLDEAFNCLDAQIRPRALRLVR 172
                  556788899*******.***************998544478999*******************9999875 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05      0.18     220     283 ..      97     172 ..      20     185 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4e-05
    PF13304.1 220 dviflkkgdggelplsdlSdGtkrllalltallsalekg............svlliDEpEngLHPkllrrliellk 283
                     +    ++ e++   lS G+++l++ll al+     g            ++ll+DE  n L+  + +r ++l++
  MMETSP0890-20130614|24725_1  97 LSSLDIVRKNTEITCGVLSGGQRHLIYLLRALAPIFIAGnrsrtnlfqprvDILLLDEAFNCLDAQIRPRALRLVR 172
                  444555667778888899*******988888888888888888********************9988888888873 PP

>> PF00154.16  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.4e-05      0.25     157     196 ..     156     195 ..     145     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.4e-05
                  ----HHHHHHHHHHHHHHHHTT---EEEEE---------- CS
   PF00154.16 157 hvglqarlmsqalrkltgsisksntlvifinqirekiGvm 196
                     l+a++  +alr +  +i++ n++ +f+nqi + + v+
  MMETSP0890-20130614|24725_1 156 FNCLDAQIRPRALRLVRYAITNFNVACVFVNQILHEVAVL 195
                  567899999************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.93
# Mc/sec: 930.20
//
Query:       MMETSP0890-20130614|24742_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-49  169.2   0.0    1.3e-49  169.0   0.0    1.1  1  PF10282.4 Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> PF10282.4  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   9.4e-54   1.3e-49       2     342 ..       5     371 ..       4     373 .. 0.84

  Alignments for each domain:
  == domain 1    score: 169.0 bits;  conditional E-value: 9.4e-54
                  EEEEEGGG.........TEEEEEEE.-----EEEEEEEE.....--------EE-TTSSEEEE--T......TTTEEEEEEE-S----EEEEEEEE..-----S--EE-----EEEE----......---EEEEEB.--.--B----E.EE...............---------EE-TTSSEEEEEEGGGTEEEEEEE.-----.EEE.EEEEE--------EEEE-TTSSEEEEEETTTTEEEEEESS------EEEEEEE-S-TT--S---EEEEEE-----EEEEEETT...TTEEEEEEE------E..EE---EE-SSS.----EE-----EEEE----S-EEEEEEE------EEE---E..E------EE CS
    PF10282.4   2 lyvgtytk......gesegiytlkldtetgklselelva.....elenPsyLalsadkktlYavnetg....kegsvsafsidkdsgkltllnkvps.egaspchlsvdedgklllvAnYs......ggsvsvfpldad.gklkeasq.vvehegs....gpnperqegphaHqvvldpdgkfllvpdLGtDkirvykldkatgk.lte.paslklepgsGPRHlvFhpdgkiaYvvnELsstvsvlsydeatgtleelqtvstlpedftgknsaaeIrlspdgkfLyvSnRg...adsiavfavdeadgtl..tlveevstegdfPRdfaidpsgklllvanqksdnvtvferdaetGkltelvkd..levgepvcv 342
                  l++gty++      g++ gi +++ ++ tg+ ++  ++a      ++n+syL + +++ ++Ya++e +    + g++ af+i +d  kl+++++ +s + +s+chl    +++++lvAnY+      +gsv+ +  d + g+l++++   v  + +    g+n+erq+++haH+v ld   + +lv dLG+D i    ++ ++++ l   ++     pg+GPRH++    +++++v+nELs t+s++++d+a++++ +   +++ ++  t +  aa++rl+   + +y+S R       i+ +++d+++     + + +++t+g +PR+++i  ++++ll+anq+sd++tvf + ++tG+l++ +    ++vg+pvc+
  MMETSP0890-20130614|24742_1   5 LVIGTYSQdlgfvhGKGLGIVVIDENDFTGEKNSSHKAAvvensVVANSSYLIVVSEDYMVYALDERNdlgeSGGRLHAFRIVDD--KLEQVGEGVScGDTSSCHLLA--TKNHVLVANYNggggstQGSVACVVRDPKtGALGSVQVkRVGVSFPrtetGVNKERQDTSHAHMVLLDSP-NSILVADLGSDVIWRLPYNPHNHNaLGDpVPVALCDPGDGPRHMTL---NRYLFVLNELSCTLSIFDLDKADMAMCKFPLLPSNNSSSTIA-TAAALRLT--ANAVYCSLRVvdgPGLISYYSIDPNTDLPisSSLCHIETGGSMPREIQILDNNSILLAANQNSDTITVFDIHPTTGALKPSSMPhcTRVGTPVCI 371
                  789****99*9999999999998885555554444443323455899********************99**9999********88..799999988878899999998..888********999998888887777666588887754333333223346*****************977.668899************9999877666588889***********9...799*****************9999999999999988888888.9*******..888*******666668******999865433566789*****************************************9987665589*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.97
# Mc/sec: 943.72
//
Query:       MMETSP0890-20130614|24747_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.77
# Mc/sec: 703.35
//
Query:       MMETSP0890-20130614|24789_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:01.10
# Mc/sec: 501.06
//
Query:       MMETSP0890-20130614|24825_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-12   44.8   0.1    1.6e-11   44.0   0.0    1.4  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    1.5e-07   31.0   0.3    2.4e-07   30.4   0.2    1.3  1  PF13180.1  PDZ domain
    0.00012   21.5   0.0    0.00033   20.2   0.0    1.8  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   3.6e-15   1.6e-11      11      79 ..      97     167 ..      89     169 .. 0.93

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 3.6e-15
                  H---EEEESSTTS..SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEEE CS
   PF00595.19  11 glGfslkggsdkr..dkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLt 79 
                  glG++l +  +++     ++vs +v g++a+ ++l++GD+I +vNg+ ve  + d+ v+++ +++++v+ +
  MMETSP0890-20130614|24825_1  97 GLGIELTEVANNGqgVGVVIVSGTVDGSPAASSPLQPGDVIAKVNGRVVEAYTYDDLVDVLVSASSPVQFE 167
                  89******999999888999**********************************************99865 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   5.3e-11   2.4e-07       1      82 []      96     181 ..      96     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.3e-11
    PF13180.1   1 gdiGvsvsqlen...trgvlvvs.VkessPaakaglkpGDiilkvdgkkv..ksltdlkslllkkkpGdtvkltvlRdgkkktvevkl 82 
                  +++G++++++ n     gv++vs    +sPaa + l+pGD+i kv+g+ v   + +dl+ +l   ++ + v+++ +R  k+ +v v++
  MMETSP0890-20130614|24825_1  96 PGLGIELTEVANngqGVGVVIVSgTVDGSPAASSPLQPGDVIAKVNGRVVeaYTYDDLVDVL--VSASSPVQFETKRLRKRFKVPVTV 181
                  68999999999988777888888899************************555556666666..677788999999999999888876 PP

>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.2e-08   0.00033       3      75 ..     184     262 ..     182     265 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.2e-08
                  ESS-EEEEEEEETTCBHHHHHH.....HT-TTTGTTSS----.SSTTEEEEEEHCE.HCC.TTHHHHHHHTTSSEEECCCS CS
   PF00111.22   3 idgkevevevadgettlldaae.....enggidipysCgggg.CgtClvevnegev.qsd.etelegeeldegklrlaCqt 75 
                  +dgk+  +e  +ge+ +  a+       n +  +   Cgg+g C+tC+ +v +g+   s+  +  +   +d    r+ Cq+
  MMETSP0890-20130614|24825_1 184 PDGKTAAFEFYEGEN-IRRALSgrgvpGN-DKTFGPNCGGDGqCATCALDVISGSEyLSSaGPPETIVFKDTPTWRMGCQA 262
                  678888888888888.8888876666423.4555559***888***********997555666666666666677999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.68
# Mc/sec: 983.21
//
Query:       MMETSP0890-20130614|24878_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-08   31.8   2.6    1.2e-07   31.2   1.8    1.3  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   1.8   9.1e-12   1.2e-07       2      76 ..      27      87 ..      26      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 9.1e-12
                 EESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCEHCCTTHHHHHHHTTSSEEECCCSB CS
   PF00111.22  2 tidgkevevevadgettlldaaeenggidipysCggggCgtClvevnegevqsdetelegeeldegklrlaCqti 76
                 t++g++ve++++ g++ ll   +e+ g+ +p +C++g C +C ++v++                 +  + aC t+
  MMETSP0890-20130614|24878_1 27 TVNGQDVETVAPVGTN-LLNLGDEA-GVRLPRACRNGLCNSCICDVVDQ------------ATGTRTTIKACSTK 87
                 89*******9999999.99999999.********************953............22233456677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.81
# Mc/sec: 568.03
//
Query:       MMETSP0890-20130614|24900_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-14   52.6   0.2    3.7e-14   52.4   0.2    1.0  1  PF01612.15 3'-5' exonuclease
  ------ inclusion threshold ------
      0.023   13.5   0.1      0.027   13.2   0.1    1.1  1  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.2   5.4e-18   3.7e-14      72     172 ..       8     106 ..       4     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 5.4e-18
                  T-TTSEEEE--HHHHHHHHHHH-----..SSEEEH.HHHHHHCCHHCT-SHHHHHHHHCS.---GCTTTTS-TT.CSS-THHHHHHHHHHHHTHHHHHHHHHHH CS
   PF01612.15  72 edenitkVghnakfDlevlardfgiel..enlfdt.mlaaavldyeeshsLasLaekllgeleldkeeqiakwqkarplleeqleYAaeDadvllrlfkkLeke 172
                  ++   +++g++ ++Dl+ la   g  l    lfd+   aa +l+ ++  +L+  ++++++ + ldk+ q+++w   rpl+eeq +YAa+Da vl +l+  L+++
  MMETSP0890-20130614|24900_1   8 KK--KKIIGFAVQNDLARLAE-MGQLLdeTDLFDLqTHAAPLLQTKS-PGLSLTVRHFFDGQHLDKTLQCSDWH-RRPLTEEQRTYAALDAAVLPHLYLRLQQQ 106
                  43..479**************.5555512679***999999999999.999999********************.************************99986 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.9e-06     0.027     236     293 ..      58     113 ..      44     115 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.9e-06
    PF13434.1 236 vneifsPeyvdyfyalpeekreallkeqkatnykgvdeelleeiyeelyeqkvegekr 293
                  v  +f+ + +d+  + ++ +r+ l++eq+  +y+++d+++l ++y +l +q+ +++++
  MMETSP0890-20130614|24900_1  58 VRHFFDGQHLDKTLQCSDWHRRPLTEEQR--TYAALDAAVLPHLYLRLQQQQQQQQQQ 113
                  6778999********************97..6******************99887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.31s 00:00:00.69 Elapsed: 00:00:00.71
# Mc/sec: 388.14
//
Query:       MMETSP0890-20130614|24896_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-34  115.4  11.6    1.3e-07   31.0   0.2    7.4  7  PF00400.27 WD domain, G-beta repeat
    0.00077   18.2   0.4       0.53    8.8   0.0    3.5  2  PF08801.6  Nup133 N terminal like
  ------ inclusion threshold ------
      0.093   12.9   0.0         40    4.5   0.0    3.8  4  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00049       2.2      25      39 .]      32      46 ..      21      46 .. 0.93
   2 !    6.3   0.0    0.0018       8.3       3      39 .]      52      87 ..      50      87 .. 0.85
   3 !   31.0   0.2     3e-11   1.3e-07       9      39 .]     101     131 ..      98     131 .. 0.97
   4 !   14.4   0.0   5.1e-06     0.023      13      39 .]     165     191 ..     162     191 .. 0.96
   5 !    6.1   0.1    0.0021       9.5      10      38 ..     265     292 ..     258     293 .. 0.87
   6 !   21.7   0.0   2.6e-08   0.00012       8      39 .]     314     344 ..     312     344 .. 0.93
   7 !   28.7   0.2   1.6e-10   7.4e-07       5      38 ..     353     386 .]     350     386 .] 0.96

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00049
                 EEEEEETTSEEEEEE CS
   PF00400.27 25 llasgSrDgtirlWd 39
                 +l++++ D++ir W+
  MMETSP0890-20130614|24896_1 32 VLCTAGMDHKIRFWE 46
                 699***********6 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0018
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 c++t+r  +s V+++a+s d +l++ ++ +   r++d
  MMETSP0890-20130614|24896_1 52 CTRTIRFAESQVNALAISTD-KLCVIAGGNPQARIFD 87
                 888888899***********.8888888778888877 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 3e-11
                  SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   Ht+ Vt+v f  d++++++gS+Dgti++Wd
  MMETSP0890-20130614|24896_1 101 SHTNNVTAVGFQADRRWVFTGSEDGTIKVWD 131
                  5*****************************9 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 5.1e-06
                  SEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgSrDgtirlWd 39 
                  +V++v  +p++  l+sg  +g +++Wd
  MMETSP0890-20130614|24896_1 165 AVNSVVLHPNQGELISGDQNGRVCVWD 191
                  7*************************9 PP

  == domain 5    score: 6.1 bits;  conditional E-value: 0.0021
                  SSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  10 HtspVtcvafspdgpllasgSrDgtirlW 38 
                  H  p+++va++ d ++l++g  +  ++ W
  MMETSP0890-20130614|24896_1 265 H-LPIRSVAIASDASRLVCGDNNADVYFW 292
                  6.79****************999999988 PP

  == domain 6    score: 21.7 bits;  conditional E-value: 2.6e-08
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +gH   +   a+spd +ll++ S+D+t +lW+
  MMETSP0890-20130614|24896_1 314 SGH-TYILKTAISPDAQLLVTTSSDKTAKLWN 344
                  588.889999*********************7 PP

  == domain 7    score: 28.7 bits;  conditional E-value: 1.6e-10
                  EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  +tl  H+ +V++ +fs d+ +l+++S+D++ rlW
  MMETSP0890-20130614|24896_1 353 RTLAQHQRWVWDACFSADSAYLVTASSDHSARLW 386
                  68999***************************** PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00012      0.53     185     217 ..     100     131 ..      77     143 .. 0.79
   2 !    4.6   0.1    0.0023        10     187     219 ..     314     346 ..     159     364 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00012
    PF08801.6 185 aseqeteivqlridssrrilytlsskgtirvwd 217
                  +s++ + ++++     rr+++t s++gti+vwd
  MMETSP0890-20130614|24896_1 100 FSHTNN-VTAVGFQADRRWVFTGSEDGTIKVWD 131
                  677677.99999999*****************8 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0023
    PF08801.6 187 eqeteivqlridssrrilytlsskgtirvwdls 219
                  + +t i + +i++  ++l+t ss++t + w++ 
  MMETSP0890-20130614|24896_1 314 SGHTYILKTAISPDAQLLVTTSSDKTAKLWNID 346
                  336667777777777888888888888888886 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.63   2.9e+03      13      29 ..      63      78 ..      57      88 .. 0.63
   2 ?    4.5   0.0    0.0087        40      22      40 .]     116     134 ..     101     134 .. 0.83
   3 ?    2.7   0.0     0.032   1.5e+02       8      38 ..     161     192 ..     158     194 .. 0.74
   4 ?   -1.0   0.0      0.46   2.1e+03      16      34 ..     270     290 ..     255     293 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.63
    PF13570.1 13 vnsspavdgglvyvgtg 29
                 v + +a++ +++ v +g
  MMETSP0890-20130614|24896_1 63 V-NALAISTDKLCVIAG 78
                 4.456888777666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0087
    PF13570.1  22 glvyvgtgdGrlyAlDaet 40 
                  + v+ g++dG++ + D+++
  MMETSP0890-20130614|24896_1 116 RWVFTGSEDGTIKVWDPRS 134
                  569*********9999986 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.032
    PF13570.1   8 dtpgpvnsspav..dgglvyvgtgdGrlyAlDa 38 
                  +tp++vn s+++    g +  g+ +Gr+++ D 
  MMETSP0890-20130614|24896_1 161 PTPAAVN-SVVLhpNQGELISGDQNGRVCVWDL 192
                  7888775.45441257899999******99986 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.46
    PF13570.1  16 sp..avdgglvyvgtgdGrly 34 
                  s+  a d  +++ g+ +  +y
  MMETSP0890-20130614|24896_1 270 SVaiASDASRLVCGDNNADVY 290
                  442355567899999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.77
# Mc/sec: 1201.29
//
Query:       MMETSP0890-20130614|24891_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097   11.2   4.8      0.036   12.6   1.6    1.5  2  PF07267.6 Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> PF07267.6  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.1   1.4e+03     282     297 ..      23      38 ..       3     138 .. 0.62
   2 ?   12.6   1.6   2.6e-06     0.036     298     475 ..     231     418 ..     197     422 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.1
    PF07267.6 282 ikknykkqlnfdahds 297
                  +++n ++ ln d+ ++
  MMETSP0890-20130614|24891_1  23 VRRNSSNSLNRDEAEE 38 
                  2333333333332222 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.6e-06
    PF07267.6 298 vddvrefAkkvwraknsvaqtpanerelqsPeqtparrkstkqeeevkslqtPlqtpa..........etksdqeaiksepektleeklreklpsdlsaesslpdkddeasslap...tekrkRrrvrklqelssdeeedssdeeevDkekerkRrreeDknfLrlkAlelskyagvneRmekivqvtkam 475
                  + d +++  ++   +  +++tp +++++++ ++ p  +k++ q+ +  s+  P  tp+          +++s   +  ++++ +l+ ++ e  p+    ++ l+  + ++   a+   +e+++ + +r+++ +    ++++ + ++ D+e   +++  + ++  r k l +s+y+ +  R+ k vq t a+
  MMETSP0890-20130614|24891_1 231 IFDASQLPDNLVSDQL-PPETPVRDHSIPQVTNSPNLKKEIIQPYS--SSPLPRVTPTdedsnehakgNKRSFSASSSPKNQISLRPQFSETRPAIDLRNAALRGGKVAQVLAAAaatHESNHINASRPVRTVRILKKQEEVQLDDDDDEPSIQKQSIDQEEVARAKILAVSNYIVIVLRLFKCVQTTVAV 418
                  5555555555555555.55666655555555555555555555555..5555555555888888887655555566667777888888888888444444444444443333333000333344444455555444444446667777777777888888899999*********9999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.65
# Mc/sec: 1614.78
//
Query:       MMETSP0890-20130614|24901_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-22   78.6   0.0    4.9e-22   78.3   0.0    1.1  1  PF02906.9 Iron only hydrogenase large subunit, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02906.9  Iron only hydrogenase large subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   3.6e-26   4.9e-22     148     283 .]       8     150 ..       1     150 [. 0.79

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 3.6e-26
                  SS-EEEETTT---HHHH-......---GGGS-------------------------HHHHHHHHHHHH-------.---EE-------EEEEEE-.--EEEEEEE-----HHHHHHHHH------SEEEE-SS-.---------- CS
    PF02906.9 148 dvDavlTtrElaelikea......gidlaeleeeeldnplgessgagrifgasGGvmeavlrtakeeltgeeldn.lefeevrglegikeaevel.gkelkvavvnGlkniqkllrklkagevkydfiEvmaCp.gGCvgGGGqp 283
                  d+D+vlTt+ l e +         g + ++  +++ ++++ +s   +++ + sG ++e++ r ++ ++ g  +++ l++e vr+ +++ +  ++l +k++++  ++G++n+qk+ +++k+g ++y+f+E+maCp gGC++GGGq+
  MMETSP0890-20130614|24901_1   8 DIDLVLTTSQLLEALGGLeklrcyGEKDNDNRNGDSNDDFLHSAPVSQNHAGSGAYLEYTYRFIAAKY-GIMVPSaLPYERVRN-DDFYQVALTLpEKTIRFSRAYGFRNVQKIANSIKRGDCPYHFVEIMACPsGGCLNGGGQI 150
                  9*************9944223333444444444444444344444456679****************9.8778855********.699999999955599*********************************9568******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.59
# Mc/sec: 865.13
//
Query:       MMETSP0890-20130614|24904_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-17   62.7   0.0      1e-16   61.0   0.0    1.7  1  PF01063.14 Aminotransferase class IV


Domain annotation for each model (and alignments):
>> PF01063.14  Aminotransferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   7.3e-21     1e-16       4     213 ..       7     235 ..       4     246 .. 0.77

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 7.3e-21
   PF01063.14   4 deHleRLrksakaligldldiee.lkkilqellkkngrlqqgrlrlvvsrgggdlggsgytksecg....vkslalkqsapeslllakklrvssqpvsrav.....plaglKtlnrldnvlaalraarragaddvllvdedgn............vtEgstsNvf.ilkggelytPsles.giLpGitrqvllelakelgieveersltlkdlq.qadeafltnslrgilpvtsi 213
                  + Hl+RL +sa+ +  l+l++++ ++++++e+  ++g  + g++rlvv+rg+g   g+g    ec      +++  +  ap ++ ++++l     p+          ++++K l++ +n+  a r ar+aga+d+ll+    n            v+ g    v  i+k g l  P+ ++ g L +it  vl + a  lgi+v  + +tl++l  +a e++l++++  + p+++i
  MMETSP0890-20130614|24904_1   7 QLHLDRLVRSAESI-ALELPDRNlIERWIREACLSAG-DEKGYIRLVVTRGAGAP-GYGEHLGECLiaprKTIILWQPIAPGHSTTPRTLAPIIAPFH--PaglfkQWNTVKYLSYGANLH-ATRLARAAGAQDALLLARGWNvadddeclerrvVLDGPQFGVGwITKSGVLELPDWRQlGMLESITSTVLVQAAMHLGIPVNLGVFTLDHLLkNANELWLLSTTTDLCPIRAI 235
                  78************.8888888868999999999999.9999********98766.444444444457773333333333334444444433333332..0346668**************.999999******999877666444434455555555655555479999*********977******************************9989****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.77
# Mc/sec: 871.40
//
Query:       MMETSP0890-20130614|24912_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.76
# Mc/sec: 863.95
//
Query:       MMETSP0890-20130614|24911_1  [L=1371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.67u 0.28s 00:00:01.95 Elapsed: 00:00:01.74
# Mc/sec: 1888.16
//
Query:       MMETSP0890-20130614|24926_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.41   10.2   6.8        4.1    7.0   4.7    2.2  1  PF07885.11 Ion channel


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.7    0.0003       4.1       3      72 ..      55     126 ..      50     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0003
   PF07885.11   3 lllvllfgaviysleeswegwsfldalYfsfvtltTiGYGdivPgtdag.......rlfaivyillGlalfalllav 72 
                  ++++l+ g+++      +e++++  a+ ++++ ltT G   i P++ +         +f+++y+l+G++l+a+l +v
  MMETSP0890-20130614|24926_1  55 WFMWLFTGVFFAKT---VEKLDIPAAFLYATTELTTAGL--IPPKSVLDskkpsfpLCFSTIYLLIGVPLTAALGTV 126
                  45667777777777...9999****************98..5555666234455657888***********998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 848.18
//
Query:       MMETSP0890-20130614|24931_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-09   35.3   0.0    1.7e-08   34.4   0.0    1.5  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    1.7e-05   24.4   0.0    3.9e-05   23.3   0.0    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
     0.0083   16.2   0.0      0.021   14.9   0.0    1.6  1  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.073   12.9   0.0       0.14   12.0   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain
      0.087   12.6   0.0       0.31   10.8   0.0    1.8  2  PF02747.10 Proliferating cell nuclear antigen, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   6.1e-12   1.7e-08       8      75 ..       2      68 ..       1      69 [. 0.89

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 6.1e-12
                 SSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT......S-SSEEEETTTEEEESHHHHHHHHH CS
   PF02798.15  8 hrgraeslrillaekgveyeivrvdfeagegkspewlklnpki......grvPaledgdglklteSlAIarYla 75
                 +rg+ ++lr++la +g+ey++ r++     +  ++++  +pki       ++P+ +dg ++ +++S+A + Yl 
  MMETSP0890-20130614|24931_1  2 IRGLGAPLRMMLAWSGTEYKDIRYSG----N--DWFGEDKPKIqemtpvANLPYIKDG-DFAISQSTACLVYLG 68
                 688999*******************5....3..7788888888888888*********.9**********9996 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.4e-08   3.9e-05      15      69 .]     126     185 ..     121     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
                  HGGG------SS...-------HHHHHHHHHHHHHHHH..H---.---TT----HHHHHH CS
    PF13410.1  15 LdaleahLadgp..fllGdrpslaDialapflvrldaa..gpgl.direayPnlrawler 69 
                  ++++e+ L++++  +ll ++p++aD+ l+ ++ ++ +   ++g+    + + +l a++++
  MMETSP0890-20130614|24931_1 126 YAKFENVLEKNGtkYLLKETPCAADFHLWEMIDQFELLakNHGHaSPVAPFSKLSAYYAA 185
                  6789*******************************9995655555555899999999975 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.8e-06     0.021      14      69 ..      10      69 ..       8      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.8e-06
                 HHHHHH----EEE----....TTTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHHH CS
    PF13417.1 14 rlaLeekglpyelvevt....pgkkrpellalnpkgkvPvLeddgevltdSlvIieyLee 69
                 r++L ++g +y+ +        g+++p +++ +p   +P ++d++ ++++S++ + yL e
  MMETSP0890-20130614|24931_1 10 RMMLAWSGTEYKDIRYSgndwFGEDKPKIQEMTPVANLPYIKDGDFAISQSTACLVYLGE 69
                 889999999999887764444556799**************************9999976 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.2e-05      0.14       9      69 ..      10      69 ..       8      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.2e-05
                 HHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHHH CS
    PF13409.1  9 lialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlrylne 69
                 +++la  g e++   ++ +++  e+++   + +p   +P + d ++  i  S++ l yl e
  MMETSP0890-20130614|24931_1 10 RMMLAWSGTEYKDIRYSGNDWFGEDKPKIQEMTPVANLPYIKD-GDFAISQSTACLVYLGE 69
                 89**********9999777777788999**************7.779***********987 PP

>> PF02747.10  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.31      17      46 ..      99     128 ..      87     132 .. 0.88
   2 ?   -1.1   0.0      0.54   1.5e+03     100     127 ..     138     165 ..     130     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
                  HHHHHHHHHTTT-SEEEEEECTTEEEEEE- CS
   PF02747.10  17 efaricrDlsqlsdsvvisvtkegvkfsas 46 
                   f++ crD ++++ +v +++tk   k+ a+
  MMETSP0890-20130614|24931_1  99 AFKKACRDKAEFESTVEVQCTKTCPKYYAK 128
                  599*******************99998776 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.54
                  EEEEETTSEEEEEE--TT--EEEEEE-B CS
   PF02747.10 100 tlslssevPlvveykikdvgllkyylap 127
                  t +l +e P   ++++ ++  ++ +la+
  MMETSP0890-20130614|24931_1 138 TKYLLKETPCAADFHLWEMIDQFELLAK 165
                  6678899999999999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.89
# Mc/sec: 576.20
//
Query:       MMETSP0890-20130614|24946_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 553.91
//
Query:       MMETSP0890-20130614|24952_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-06   26.2   0.1    6.4e-06   26.2   0.1    2.7  2  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   4.7e-10   6.4e-06       2     103 ..      11     114 ..      10     115 .. 0.89
   2 ?   -1.0   1.6      0.14   1.9e+03      37      58 ..     163     193 ..     119     242 .. 0.58

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.7e-10
                  SBEEEEEEEE.......TSSSCEEEEEEEEET.....TEEEEESSSSTTCECSECEEEECGGE.EEEEEEETTSSCTTSSSSEEEEEETTT...CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   2 ikeGyllkks.......ellktwkkryfvLts.....nyLlyfksskkksykapkgsiplndc.tvkkasstkfalqkesnnyfeitfkdv...esyllsaeseeerkrWvqalknll 103
                  +k G l+k s        + ++w+kr fvL +       L y++++      + kg++ l+   ++ + +         +nn+f+++  d+    s++l a+s  e+++W+ a++ ++
  MMETSP0890-20130614|24952_1  11 KKRGVLKKLSrnrrhhsIQPSRWQKRDFVLAQtlcgvASLAYYDDKG-----KCKGAFKLEANsSISENK---------KNNVFVLNAVDEngpCSVKLAASSTNEMNAWILAIQDAI 114
                  68999999999999999999***************999999999997.....899999999884554444.........579*****99999999********************987 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.14
                  T........TCECSECEEEECGGE.EEEEEE CS
   PF00169.24  37 k........ksykapkgsiplndc.tvkkas 58 
                  +        k++ +    +pl+++ t + ++
  MMETSP0890-20130614|24952_1 163 QskveevinKESDSTVDPVPLEKIiTQESTD 193
                  0334444445555566666666663333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1089  (0.0796518); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.66
# Mc/sec: 991.22
//
Query:       MMETSP0890-20130614|24962_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-53  178.1   0.0    9.9e-53  177.4   0.0    1.3  1  PF02773.11 S-adenosylmethionine synthetase, C-terminal domain
    3.9e-40  136.4   0.0    6.6e-40  135.6   0.0    1.4  1  PF02772.11 S-adenosylmethionine synthetase, central domain
    2.8e-35  120.4   2.8    3.2e-35  120.2   0.3    2.1  2  PF00438.15 S-adenosylmethionine synthetase, N-terminal domain
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.036   13.7   0.0    1.3  1  PF06807.9  Pre-mRNA cleavage complex II protein Clp1
       0.11   11.8   0.1        0.2   10.9   0.1    1.4  1  PF12685.2  SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> PF02773.11  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0   3.6e-56   9.9e-53       1     133 [.     232     367 ..     232     381 .. 0.91

  Alignments for each domain:
  == domain 1    score: 177.4 bits;  conditional E-value: 3.6e-56
                  --------------TTTT-----------------TT-HHHHHHHHHHHHHHHHH-----SEEEEEEE------S-SEEEEE----....-SS-HHHHHHHHHHH-------HHHHHTTTSS-GGGGS-------TT CS
   PF02773.11   1 iggpqgdagltgrkiivdtygglaahgggafsgkdatkvdrsaayaaryvakslvaaglakrclvqlsyaigvaeplsilvetygt....skkseeelveivrenfdlrpgvivkeldlkkpiykktaayghfgree 133
                  +ggpq dagl+grk+ vd yg +     g+fsgkdatk+dr+aayaar++akslv+a l+kr++vql+yaig+ +p+si ++++gt    s+k++ el++iv+ nfdlrpg i+++ldl++pi + t+++ghfg + 
  MMETSP0890-20130614|24962_1 232 LGGPQADAGLSGRKLNVDGYGDWVPA-SGSFSGKDATKIDRTAAYAARWIAKSLVKAHLCKRVQVQLAYAIGIRHPISIRIDSFGTgltvSNKTDTELLDIVHANFDLRPGRIIRDLDLRRPIMTPTSKFGHFGSQP 367
                  59*********************875.679*******************************************************93333468999*************************************9864 PP

>> PF02772.11  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   2.4e-43   6.6e-40       2     120 .]     109     230 ..     108     230 .. 0.95

  Alignments for each domain:
  == domain 1    score: 135.6 bits;  conditional E-value: 2.4e-43
                  G--------B---EETTSTTSS-HHHHHHHHHHHHHHHHHH----TTEEEEEEEEEEEEE..E...EEEEEEEEEEEEEEE-SSS-HHHHHHHHHHTTHHHHS-GGG--TT-EEEES----- CS
   PF02772.11   2 eigAGDqGimfGyAtneteelmPlpislahkllkrlaevrkegelpylrpDaKsqVtveyeek...gkpvrvdtvvvstqhdedvsqeelredviekvikkvlpeelldeetkllinptGrF 120
                  + +A Dq i+ GyAt+eteelmPl+++la++++ rl++vrk++ +++lrpD+K  Vt ey+ +    +pvrv++vv+s+qh+e+v+qee+re+++e vik+ +p+++ d++t +++np+GrF
  MMETSP0890-20130614|24962_1 109 DLAASDQCIVTGYATDETEELMPLSHVLATRIAARLSHVRKTKIIEWLRPDGKVMVTCEYKLSgknVTPVRVNSVVLSIQHEESVDQEEIREQIMEIVIKPSIPAKFRDDDTIYHLNPAGRF 230
                  678*********************************************************75533368**************************************99999**********9 PP

>> PF00438.15  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.3   1.2e-38   3.2e-35       6     100 .]       2      96 ..       1      96 [. 0.99
   2 ?   -0.2   0.1      0.37     1e+03      43      81 ..     155     193 ..     140     210 .. 0.57

  Alignments for each domain:
  == domain 1    score: 120.2 bits;  conditional E-value: 1.2e-38
   PF00438.15   6 tsEsvseGHPDkvaDqisDailDailakdpesrvavetlvttglvvvagevttkaevdieeivrevikeiGYeqakkgfdaktvkvlvlleeqsa 100
                  +sE+v eGHPDkv+DqisD++lDa++++d+ +rv +e++++tg+v+++ge++t++++++e+++r+++++iGY++ +kg+d+k+++v+v++eeqs+
  MMETSP0890-20130614|24962_1   2 SSEAVCEGHPDKVCDQISDSVLDACVKEDEGARVGCECCTKTGMVMIFGEISTSSTINYEAVIRTTLRDIGYDDPAKGLDYKSANVIVAVEEQSP 96 
                  69*******************************************************************************************97 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.37
   PF00438.15  43 tlvttglvvvagevttkaevdieeivrevikeiGYeqak 81 
                   l   g+v+v+ e + + ++ +   v +v+ +i +e++ 
  MMETSP0890-20130614|24962_1 155 WLRPDGKVMVTCEYKLSGKNVTPVRVNSVVLSIQHEESV 193
                  444555666666665555555555555555555555533 PP

>> PF06807.9  Pre-mRNA cleavage complex II protein Clp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.036      13     139 ..      78     211 ..      68     232 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
    PF06807.9  13 eliralspsvvvvlr.dqeeklvpdlkralkdkkdglavdvlelaksegvv.........erskktrrslrdlrilsYfsgrltvelspheslvklsdvtpykvpfpdvtlpvglqsdvdptkvlsalnhsvvalsk 139
                  + +++ s++v+v +  ++ e  v+ ++ +l+d      + v+ +a  e +          +r +   + +r+ +i+++++   +  +   e  ++ ++vtp +v  + v l + ++++vd+ ++ +++ + v+  s+
  MMETSP0890-20130614|24962_1  78 KGLDYKSANVIVAVEeQSPELAVHIDSMKLDDLAASDQCIVTGYATDETEElmplshvlaTRIAARLSHVRKTKIIEWLRPDGK-VMVTCEYKLSGKNVTPVRV--NSVVLSIQHEESVDQEEIREQIMEIVIKPSI 211
                  55667777888888744455556667777777766666777777777666677899999999******************7445.5889999999999999999..9*****************9999887775555 PP

>> PF12685.2  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.4e-05       0.2     131     180 ..      56     105 ..      52     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.4e-05
    PF12685.2 131 ekaekenaiEtllkakGfeDavVsieddkvdVvVkaeeltdaeaaqIedi 180
                   +++ e+ i t+l+  G++D+   ++ ++++V+V  ee + + a+ I ++
  MMETSP0890-20130614|24962_1  56 STINYEAVIRTTLRDIGYDDPAKGLDYKSANVIVAVEEQSPELAVHIDSM 105
                  6778999*******************************999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:01.02
# Mc/sec: 909.21
//
Query:       MMETSP0890-20130614|24974_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 355.32
//
Query:       MMETSP0890-20130614|24984_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-28   97.3   0.0    1.1e-27   96.8   0.0    1.2  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   7.8e-32   1.1e-27       2     163 ..      46     192 ..      45     193 .. 0.95

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 7.8e-32
   PF00849.17   2 lvvvnKPagvpvtpeakggsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgsktpksgksakvtlveleletGrkhQiRahla 163
                  l+vvnK a++ + p+    s+++++      r+e+  k l++ hRLD++tsGl+ + +++ a+++l+ +f++r+v+K+Y++ v g p+ ++g+i+ +i +      +    a   dg+ +++++++l+++         +++tl+ l+++tGr+ Q+R+hla
  MMETSP0890-20130614|24984_1  46 LIVVNKDANLLTVPGI---SKDKQDSLLLRLRRELDAKDLHAAHRLDRDTSGLIAFGRTKSAHRALSISFQKREVQKTYIGRVLGFPPTDAGIIDVPIGR---SVAKGGAYAVATDGRPSISRYETLARD---------EHTTLLSLVPVTGRTQQLRIHLA 192
                  89**************...999******************************************************************************...5555556667789**************.........*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 806.05
//
Query:       MMETSP0890-20130614|24994_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-07   31.0   0.2    4.6e-06   26.6   0.1    2.2  1  PF13401.1  AAA domain
    3.1e-07   31.0   0.0    1.1e-06   29.2   0.0    2.1  1  PF13207.1  AAA domain
    2.7e-06   27.2   0.4      2e-05   24.4   0.3    2.1  1  PF13671.1  AAA domain
    6.5e-06   26.3   0.0    2.4e-05   24.5   0.0    2.0  1  PF13238.1  AAA domain
    1.1e-05   24.8   0.0      0.055   12.7   0.0    3.1  2  PF00625.16 Guanylate kinase
    1.6e-05   25.2   3.7    0.00016   22.0   2.6    2.1  1  PF13191.1  AAA ATPase domain
    0.00014   21.3   0.8     0.0015   18.0   0.4    2.3  1  PF05729.7  NACHT domain
    0.00037   19.8   0.1     0.0049   16.1   0.0    2.4  3  PF01695.12 IstB-like ATP binding protein
    0.00043   19.3   0.0    0.00066   18.7   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
    0.00048   18.9   0.0    0.00077   18.2   0.0    1.2  1  PF03215.10 Rad17 cell cycle checkpoint protein
    0.00087   19.3   0.1     0.0045   17.0   0.0    2.1  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
     0.0023   17.7   0.0     0.0066   16.2   0.0    1.9  2  PF13173.1  AAA domain
      0.004   17.0   0.0     0.0079   16.0   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
     0.0043   16.2   0.0      0.022   13.8   0.0    1.8  2  PF12846.2  AAA-like domain
     0.0044   17.0   0.0      0.012   15.6   0.0    1.7  1  PF00910.17 RNA helicase
     0.0046   15.7   0.0      0.017   13.8   0.0    1.9  2  PF00931.17 NB-ARC domain
     0.0055   15.7   0.0      0.013   14.4   0.0    1.6  1  PF06414.7  Zeta toxin
     0.0086   15.1   0.0       0.02   13.9   0.0    1.6  2  PF08433.5  Chromatin associated protein KTI12
     0.0088   15.5   0.0      0.013   15.0   0.0    1.3  1  PF01443.13 Viral (Superfamily 1) RNA helicase
     0.0095   15.2   0.0      0.028   13.7   0.0    1.8  2  PF13481.1  AAA domain
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.038   13.0   0.0    1.7  2  PF01078.16 Magnesium chelatase, subunit ChlI
      0.014   14.9   0.1      0.041   13.4   0.0    1.7  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.015   14.9   0.0      0.046   13.3   0.0    1.8  1  PF07728.9  AAA domain (dynein-related subfamily)
       0.02   14.7   0.0      0.048   13.5   0.0    1.6  1  PF13521.1  AAA domain
      0.022   13.4   0.0      0.037   12.6   0.0    1.3  1  PF03308.11 ArgK protein
      0.026   14.1   0.0      0.061   12.9   0.0    1.7  1  PF13245.1  Part of AAA domain
      0.033   14.5   0.0      0.066   13.6   0.0    1.6  1  PF08477.8  Miro-like protein
      0.036   13.6   0.0      0.066   12.8   0.0    1.4  1  PF03266.10 NTPase
      0.036   13.6   0.1       0.08   12.5   0.1    1.8  1  PF01637.13 Archaeal ATPase
      0.037   13.4   0.0      0.066   12.6   0.0    1.3  1  PF13479.1  AAA domain
      0.041   13.2   0.1       0.15   11.4   0.0    1.9  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
       0.08   13.1   0.0        1.9    8.6   0.0    2.1  2  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   1.1e-08   4.6e-06       4      30 ..      37      63 ..      33     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.1e-08
    PF13401.1  4 agilvvtGesGvGKTtllrrlarqlde 30
                 +++lv++G++GvGK+tl+rrl++++ +
  MMETSP0890-20130614|24994_1 37 RTVLVICGPPGVGKSTLARRLVQEDAR 63
                 6899******************98754 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.7e-09   1.1e-06       1      59 [.      39     102 ..      39     256 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.7e-09
                  EE--B--TT---HHHHHHHHHHST.......EEEEEGGGB--GGGS-B--.---B--SSGGGB-HHH CS
    PF13207.1   1 viaitGppGsGKsTlakeLaerlg.......lpvlslddllreeglkeld.dgereskdadadllaa 59 
                  v +i+GppG+GKsTla++L ++ +       +  ls +     e ++ ++ ++++  ++a ++l  a
  MMETSP0890-20130614|24994_1  39 VLVICGPPGVGKSTLARRLVQE-DarftlpaWSLLSPNR--PLEEYDDRPrREVLLDHEAVQNLEWA 102
                  578****************888.4233322355666666..44555544423332222222222222 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.3   4.6e-08     2e-05       1      24 [.      39      62 ..      39     224 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4.6e-08
    PF13671.1  1 lvllvGlpGsGKstlaerllkklg 24
                 +++++G+pG GKstla+rl+++  
  MMETSP0890-20130614|24994_1 39 VLVICGPPGVGKSTLARRLVQEDA 62
                 7899****************9876 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.6e-08   2.4e-05       2      54 ..      41     116 ..      40     204 .. 0.52

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.6e-08
    PF13238.1   2 litGtpGvGKtTlakeLaerl.........................gdvlrdlakengleeevddkidtkeskelded 54 
                  +i+G+pGvGK+Tla++L ++                          ++vl d     +le+ v     +++ + +d +
  MMETSP0890-20130614|24994_1  41 VICGPPGVGKSTLARRLVQEDarftlpawsllspnrpleeyddrprREVLLDHEAVQNLEWAVLSS--VEDTESIDSN 116
                  69***************8875566556655555555555555555544444444444444444444..3333333333 PP

>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00013     0.055       2      26 ..      37      61 ..      36     102 .. 0.86
   2 ?    6.0   0.0     0.015       6.4     159     180 ..     230     254 ..     135     256 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00013
                 --EEEEE------HHHHHHHHHHH- CS
   PF00625.16  2 rrpivlvGpsgvGkstlkkaLldel 26
                 r+ +v+ Gp gvGkstl+ +L++e 
  MMETSP0890-20130614|24994_1 37 RTVLVICGPPGVGKSTLARRLVQED 61
                 5789*****************9964 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.015
                  ...-SE.EEEE--HHHHHHHHHHHH CS
   PF00625.16 159 e..Fdv.vivnddldealkklkeil 180
                     F++ +i++d+ld a+ klk+++
  MMETSP0890-20130614|24994_1 230 SpmFEFtIINDDSLDIAYDKLKRAV 254
                  1234431445556777777777765 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.6   3.6e-07   0.00016      24     104 ..      38     155 ..      15     244 .. 0.56

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.6e-07
    PF13191.1  24 plllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa......lrellrqlltelaaelggwreallaalga...........................................l 104
                  ++l++ Gp+G+GKS+L+r+    +++e++rf+   +++l  n p+++ +++      l        +++a +  +w+   +   ++                                            
  MMETSP0890-20130614|24994_1  38 TVLVICGPPGVGKSTLARR----LVQEDARFTLPAWSLLSPNRPLEEYDDRprrevlL--------DHEAVQNLEWAVLSSVEDTEsidsnymnepvqtywalrrdellyrtdnkvpvldcdvitarqlE 155
                  3899***************....88889999998888888886666666443222221........2222222222222222222233334444455555555555555555555555555555555552 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.4   3.4e-06    0.0015       2      47 ..      39      83 ..      38     213 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.4e-06
    PF05729.7  2 tvilqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsr 47
                 ++++ G++G+GK+tL+++l+++ a+ +lp+    l+   +l e ++
  MMETSP0890-20130614|24994_1 39 VLVICGPPGVGKSTLARRLVQEDARFTLPAWS-LLSPNRPLEEYDD 83
                 6899*****************99998888753.5555555555555 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0049      46      70 ..      36      60 ..      20      66 .. 0.87
   2 ?    0.2   0.1      0.89   3.8e+02      82     102 ..     171     191 ..     164     200 .. 0.84
   3 ?   -1.8   0.0       3.8   1.6e+03      90     117 ..     196     224 ..     193     230 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-05
   PF01695.12 46 qaenlvllGpsGvGKthlAialgve 70
                 ++  lv++Gp+GvGK+ lA  l++e
  MMETSP0890-20130614|24994_1 36 KRTVLVICGPPGVGKSTLARRLVQE 60
                 56789**************999887 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.89
   PF01695.12  82 rledLveeLkrakgdgrlera 102
                  +l+dL ++L+ra++d+ l++ 
  MMETSP0890-20130614|24994_1 171 SLDDLTNRLERAEADKALAKL 191
                  5789**********9999886 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 3.8
   PF01695.12  90 Lkrakgdgrleralkrlakvdll.ilDdl 117
                  L  ++++++l++ +++ a+++l  i+Dd+
  MMETSP0890-20130614|24994_1 196 LDDEQAKANLAQSVAKRAQARLAsIIDDI 224
                  66667777777777777777764477776 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.5e-06   0.00066      29      60 ..      30      62 ..      12     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.5e-06
                 HHHHCTT.SBEEEE-------HHHHHHH----- CS
   PF03193.11 29 laellkd.ktsvlvGqSGvGKSsLinallpeld 60
                 +++ l +  + v++G+ GvGKS+L  +l++e  
  MMETSP0890-20130614|24994_1 30 FSPSLWKrTVLVICGPPGVGKSTLARRLVQEDA 62
                 555555537899****************99865 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-06   0.00077      33      68 ..      24      60 ..      19      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.8e-06
   PF03215.10 33 ewlkadflesakkr.illltGPsGcgKsTtvkvlske 68
                 + ++ +f++s  kr +l ++GP+G gKsT  + l +e
  MMETSP0890-20130614|24994_1 24 TKIDGQFSPSLWKRtVLVICGPPGVGKSTLARRLVQE 60
                 668899999998888**************99988776 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-05    0.0045       2      21 ..      41      60 ..      40      79 .. 0.85
   2 ?   -1.5   0.0       5.8   2.5e+03      11      28 ..     202     219 ..     199     228 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-05
                 EEE-------HHHHHHHHHH CS
   PF00004.24  2 llyGppGtGKTllakavake 21
                 +++GppG+GK++la+ +++e
  MMETSP0890-20130614|24994_1 41 VICGPPGVGKSTLARRLVQE 60
                 689**************998 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 5.8
                  -HHHHHHHHHHCTHEEEE CS
   PF00004.24  11 KTllakavakelgvefle 28 
                  K  la++vak +++++ +
  MMETSP0890-20130614|24994_1 202 KANLAQSVAKRAQARLAS 219
                  455666666666555443 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0066       2      27 ..      37      62 ..      36     114 .. 0.85
   2 ?   -2.0   0.0       6.4   2.7e+03      35      43 ..     194     202 ..     166     226 .. 0.54

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-05
    PF13173.1  2 rkilvitGpRrvGKttllkqlakell 27
                 r +lvi Gp +vGK+tl+++l++e  
  MMETSP0890-20130614|24994_1 37 RTVLVICGPPGVGKSTLARRLVQEDA 62
                 6799*****************98865 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 6.4
    PF13173.1  35 inlddeelr 43 
                   nldde+ +
  MMETSP0890-20130614|24994_1 194 TNLDDEQAK 202
                  345553332 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-05    0.0079       3      23 ..      41      61 ..      39     117 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.9e-05
                 EEE--TT---HHHHHHHHCST CS
   PF01926.18  3 aivGrpNvGKStLinaLtgek 23
                 +i G p vGKStL ++L++e+
  MMETSP0890-20130614|24994_1 41 VICGPPGVGKSTLARRLVQED 61
                 899**************9764 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.3e-05     0.022       4      24 ..      40      60 ..      38      69 .. 0.87
   2 ?   -0.1   0.0      0.94     4e+02     140     177 ..     172     211 ..     130     243 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.3e-05
    PF12846.2  4 tlilGppGsGKSvllkklvlq 24
                  +i+GppG GKS+l+++lv +
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRLVQE 60
                 589**************9865 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.94
    PF12846.2 140 lgdllealreeeeelaeealarde..rreaaeelalaler 177
                  l+dl++ l+++e + a  +l +++  +++a ++la++++ 
  MMETSP0890-20130614|24994_1 172 LDDLTNRLERAEADKALAKLSSTNldDEQAKANLAQSVAK 211
                  6677777777775555555555555544444444444444 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.8e-05     0.012       1      21 [.      40      60 ..      40      84 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.8e-05
   PF00910.17  1 iwlyGpsgeGKStlakeLaka 21
                 ++++Gp+g+GKStla++L+++
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRLVQE 60
                 589**************9886 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.9e-05     0.017      18      49 ..      36      64 ..      21      80 .. 0.82
   2 ?   -2.0   0.2       2.7   1.2e+03      70     110 ..     175     224 ..     169     226 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.9e-05
                 SSEEEEEE-------HHHHHHHTS-SS----- CS
   PF00931.17 18 elkvvglvGmgGvGKttlakqvykdesveshF 49
                 +++v+ + G +GvGK+tla+  ++++    +F
  MMETSP0890-20130614|24994_1 36 KRTVLVICGPPGVGKSTLARRLVQED---ARF 64
                 5789*****************99884...445 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.7
                  HHHHHXXXXXXX......-TTSS-HHHHHHHHHHTTT-...SEEEEEEEE CS
   PF00931.17  70 ilkeLgkededv......svekneselkrklkelLkrk...rfLlvLDDV 110
                  + ++L++++ d       s + +++++k +l + + ++   r   ++DD+
  MMETSP0890-20130614|24994_1 175 LTNRLERAEADKalaklsSTNLDDEQAKANLAQSVAKRaqaRLASIIDDI 224
                  55566655444456666667778888888888888776667777788887 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.1e-05     0.013      10      39 ..      31      60 ..      22      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.1e-05
    PF06414.7 10 vpeqekpkavllgGqpGAGKtslaelllee 39
                  p+  k+++++++G+pG GK++la++l +e
  MMETSP0890-20130614|24994_1 31 SPSLWKRTVLVICGPPGVGKSTLARRLVQE 60
                 4666899******************99886 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.8e-05      0.02       4      24 ..      40      60 ..      38      97 .. 0.92
   2 ?   -2.4   0.0       4.5   1.9e+03      54      65 ..     199     210 ..     170     226 .. 0.46

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.8e-05
    PF08433.5  4 vvltGlPssGKstvakeLaka 24
                 +v++G P +GKst+a++L ++
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRLVQE 60
                 79****************886 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 4.5
    PF08433.5  54 kalRsslrsavk 65 
                  ++++++l ++v+
  MMETSP0890-20130614|24994_1 199 EQAKANLAQSVA 210
                  222223333333 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     3e-05     0.013       2      63 ..      41     112 ..      40     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3e-05
   PF01443.13   2 vvhGvpGcGKStlirkllrt...........ltvnrptaelrtegkpklpnlsvrtvdsflmalvkskgkili 63 
                  v+ G pG GKStl r+l+++           l++nrp  e + ++  ++  l+++ v+ ++ a + s  ++  
  MMETSP0890-20130614|24994_1  41 VICGPPGVGKSTLARRLVQEdarftlpawslLSPNRP-LEEYDDRPRREVLLDHEAVQNLEWAVLSSVEDTES 112
                  88999*************************9999999.******99888888888888888777766555555 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.5e-05     0.028      32      53 ..      36      57 ..      19     102 .. 0.88
   2 ?   -1.6   0.1       3.2   1.4e+03      84     110 ..     173     198 ..     160     225 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.5e-05
    PF13481.1 32 rgsltllaGapgtGKStlalql 53
                 + +++++ G+pg+GKStla  l
  MMETSP0890-20130614|24994_1 36 KRTVLVICGPPGVGKSTLARRL 57
                 5789**************9655 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 3.2
    PF13481.1  84 aelrrrlsailaalddpenlllvslag 110
                  ++l +rl+++ a+    ++l  ++l++
  MMETSP0890-20130614|24994_1 173 DDLTNRLERAEADK-ALAKLSSTNLDD 198
                  35566666655542.334444333333 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     9e-05     0.038      25      43 ..      40      58 ..      36      64 .. 0.91
   2 ?   -2.5   0.0         5   2.2e+03     162     197 ..     194     228 ..     187     234 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9e-05
   PF01078.16 25 lllvGppGsGKtmlakrlp 43
                 l+++GppG GK+ la+rl 
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRLV 58
                 7899*************96 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5
   PF01078.16 162 gklgdkekecacspkeierYlsklsgplldRidlqv 197
                   +l+d++++++ +++  +r +++l+  ++d id  +
  MMETSP0890-20130614|24994_1 194 TNLDDEQAKANLAQSVAKRAQARLA-SIIDDIDFGI 228
                  5667777788888888888888886.4667777766 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.6e-05     0.041       2      22 ..      39      59 ..      38      63 .. 0.91
   2 ?   -2.3   0.0         7     3e+03      68      88 ..     202     222 ..     179     229 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.6e-05
                 EEEEE-------HHHHHHHHH CS
    PF03205.9  2 ivavvGpkdsGKTtlieklvn 22
                 +++++Gp ++GK+tl+++lv+
  MMETSP0890-20130614|24994_1 39 VLVICGPPGVGKSTLARRLVQ 59
                 789****************97 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 7
                  EEEEEEE-SSS----HHHHHH CS
    PF03205.9  68 plavvtgfllekeadLealls 88 
                  ++ + +++ ++ +a L+ +++
  MMETSP0890-20130614|24994_1 202 KANLAQSVAKRAQARLASIID 222
                  445555555555555555554 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00011     0.046       2      19 ..      40      57 ..      39      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00011
                 EEEE------HHHHHHHG CS
    PF07728.9  2 vlLvGppGtgKselaerl 19
                 +++ GppG+gKs+la+rl
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRL 57
                 5789************98 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   0.00011     0.048       3      22 ..      41      60 ..      39      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.00011
    PF13521.1  3 vitGgpstGKTtlleaLaar 22
                 vi G+p++GK+tl+++L ++
  MMETSP0890-20130614|24994_1 41 VICGPPGVGKSTLARRLVQE 60
                 99**************9765 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.7e-05     0.037      22      52 ..      30      60 ..      13      65 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.7e-05
                 HGGG----EEE--B-------HHHHHH---H CS
   PF03308.11 22 ilpkaGralvvGltGvPGaGkstlveklike 52
                  +p+  + +v+ + G PG+Gkstl  +l++e
  MMETSP0890-20130614|24994_1 30 FSPSLWKRTVLVICGPPGVGKSTLARRLVQE 60
                 556666778999**************99876 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00014     0.061      10      32 ..      37      58 ..      33      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
    PF13245.1 10 npllvvtGgPGtGKTttlaaiia 32
                 + +lv+ G+PG GK+ tla++ +
  MMETSP0890-20130614|24994_1 37 RTVLVICGPPGVGKS-TLARRLV 58
                 56899**********.6666554 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   0.00015     0.066       2      25 ..      40      63 ..      39     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00015
    PF08477.8  2 vvvvGdkgvGKssllsqlvgeefp 25
                 +v++G +gvGKs+l ++lv+e+  
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRLVQEDAR 63
                 59*****************98876 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00015     0.066       2      21 ..      40      59 ..      39      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00015
                 EEEE-------HHHHHHHHH CS
   PF03266.10  2 vfiTGepgvGKtTlvkkvle 21
                 ++i G+pgvGK+Tl +++++
  MMETSP0890-20130614|24994_1 40 LVICGPPGVGKSTLARRLVQ 59
                 689************99886 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00019      0.08      20      44 ..      37      61 ..      33     257 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00019
                 -SEEEEE--TT---HHHHHHHHHH- CS
   PF01637.13 20 nsiiviyGprrsGKTaLlkeileel 44
                 ++++vi Gp ++GK++L +++++e 
  MMETSP0890-20130614|24994_1 37 RTVLVICGPPGVGKSTLARRLVQED 61
                 5799****************99986 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015     0.066       5      23 ..      39      57 ..      36      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00015
    PF13479.1  5 kvliYGkpGiGKTslaktl 23
                  ++i G+pG+GK++la++l
  MMETSP0890-20130614|24994_1 39 VLVICGPPGVGKSTLARRL 57
                 579*************988 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00035      0.15       2      24 ..      39      60 ..      38      66 .. 0.84
   2 ?   -1.2   0.0       2.4     1e+03     117     117 ..     187     187 ..     121     227 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00035
                 EEEEE-------HHHHHHHHCHS CS
   PF02492.14  2 vtvltGflGsGKTtLlekllekn 24
                 v+v+ G++G GK+tL ++l+ ++
  MMETSP0890-20130614|24994_1 39 VLVICGPPGVGKSTLARRLV-QE 60
                 89*****************9.44 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.4
                  E CS
   PF02492.14 117 v 117
                   
  MMETSP0890-20130614|24994_1 187 A 187
                  2 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0044       1.9      17      36 ..      30      54 ..      19      57 .. 0.72
   2 ?    2.6   0.0      0.31   1.3e+02     155     199 ..     170     222 ..      86     225 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0044
    PF13476.1 17 F.....skgltlItGpNGsGKTTil 36
                 F     ++ + +I+Gp G GK+T+ 
  MMETSP0890-20130614|24994_1 30 FspslwKRTVLVICGPPGVGKSTLA 54
                 24455556688************96 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.31
    PF13476.1 155 krleelekeleeledekellek...llqeeekek.....eleeleeeleelle 199
                  + l++l++ le +e+ k l +    +l++e+ ++       +  + +l+++++
  MMETSP0890-20130614|24994_1 170 DSLDDLTNRLERAEADKALAKLsstNLDDEQAKAnlaqsVAKRAQARLASIID 222
                  48899999999999888887765442344443332222244455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      553  (0.0404476); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                        32  (0.00234055); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.92
# Mc/sec: 677.23
//
Query:       MMETSP0890-20130614|25001_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   27.5   0.1    2.3e-06   26.9   0.1    1.4  1  PF13405.1  EF-hand domain
    3.5e-06   25.8   0.8    4.2e-06   25.5   0.1    1.5  2  PF00036.27 EF hand
    5.3e-06   25.4   0.1    9.8e-06   24.5   0.1    1.5  1  PF13202.1  EF hand
    0.00017   21.5   0.8    0.00017   21.5   0.5    1.3  1  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.016   14.7   0.0    1.1  1  PF12763.2  Cytoskeletal-regulatory complex EF hand
      0.046   13.6   0.1      0.066   13.1   0.0    1.3  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
       0.15   11.5   1.1       0.27   10.7   0.4    1.7  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.2e-09   2.3e-06       2      27 ..       7      32 ..       6      42 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.2e-09
                 HH---GCC-------B---HHHHHHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLr 27
                 +r +F+lfD+d dG++d+eEL  +L+
  MMETSP0890-20130614|25001_1  7 VRFCFQLFDTDTDGFLDREELAMCLS 32
                 689*******************9998 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   2.2e-09   4.2e-06       2      28 ..       7      33 ..       6      34 .. 0.90
   2 ?   -2.6   0.0       2.2   4.2e+03       3      11 ..      57      65 ..      55      65 .. 0.64

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                 ++  F++fD+D dG+++ eE+  +l++
  MMETSP0890-20130614|25001_1  7 VRFCFQLFDTDTDGFLDREELAMCLSS 33
                 6789*****************999976 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.2
                 HHHHHHHCT CS
   PF00036.27  3 keaFkefDk 11
                 + + +  Dk
  MMETSP0890-20130614|25001_1 57 DAMLDACDK 65
                 567777775 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1     5e-09   9.8e-06       5      22 ..      11      28 ..       7      32 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5e-09
                 HHHH--S----B-HHHHH CS
    PF13202.1  5 FrafDlNgDGkIsreELk 22
                 F+ fD++ DG+++reEL 
  MMETSP0890-20130614|25001_1 11 FQLFDTDTDGFLDREELA 28
                 ****************96 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.5   8.6e-08   0.00017       2      23 ..       7      28 ..       3      57 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 8.6e-08
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLl 23
                 ++ +F+l+D+d+dg+ld+eeL 
  MMETSP0890-20130614|25001_1  7 VRFCFQLFDTDTDGFLDREELA 28
                 4567999999999999999985 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.4e-06     0.016      43      76 ..       5      38 ..       2      63 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.4e-06
    PF12763.2 43 dklekiwdladidedgkldfeefciamrlifdlv 76
                  k+   ++l d d dg ld ee+++++  +f + 
  MMETSP0890-20130614|25001_1  5 AKVRFCFQLFDTDTDGFLDREELAMCLSSVFRVT 38
                 56677899********************999875 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05     0.066      53      78 ..       4      29 ..       1      39 [. 0.86
   2 ?   -3.5   0.0       4.7   9.3e+03      93      99 ..      59      65 ..      55      67 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.4e-05
    PF10591.4 53 keaveWkFnqlDtnkdkvlsksElap 78
                 + +v++ F+ +Dt++d++l+++Ela 
  MMETSP0890-20130614|25001_1  4 DAKVRFCFQLFDTDTDGFLDREELAM 29
                 57899*******************86 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.7
    PF10591.4 93 ffksCDa 99
                 ++++CD 
  MMETSP0890-20130614|25001_1 59 MLDACDK 65
                 5677775 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00014      0.27      26      48 ..       6      28 ..       3      33 .. 0.84
   2 ?    5.7   0.1     0.005       9.7       2      17 ..      19      35 ..      18      65 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00014
    PF13833.1 26 evdilfrefDtdgdGkisfeEFc 48
                 +v+  f +fDtd dG ++ eE  
  MMETSP0890-20130614|25001_1  6 KVRFCFQLFDTDTDGFLDREELA 28
                 6777899*************976 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.005
    PF13833.1  2 kGlItreeLkral.all 17
                 +G ++reeL ++l + +
  MMETSP0890-20130614|25001_1 19 DGFLDREELAMCLsSVF 35
                 899********996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 250.53
//
Query:       MMETSP0890-20130614|25016_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-09   35.6   1.7    0.00018   21.0   0.1    2.1  2  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.6e-06     0.022      14      41 .]       2      29 ..       1      29 [. 0.95
   2 !   21.0   0.1   1.3e-08   0.00018       1      21 [.      31      51 .]      31      51 .] 0.96

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18 14 vppLvqLLksgdeevqeeAawALsNLaa 41
                 +ppLv+LL+s     ++  a+AL+ La+
  MMETSP0890-20130614|25016_1  2 IPPLVNLLTSRAAIAKKKGAAALWSLAD 29
                 8************************995 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.3e-08
                 CHHHHHHHHHCHHHHHHHHHH CS
   PF00514.18  1 spenkqavieaGavppLvqLL 21
                 +++n  a+ +aGa+ppLv+LL
  MMETSP0890-20130614|25016_1 31 NDKNQVAIADAGAIPPLVNLL 51
                 789*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 193.99
//
Query:       MMETSP0890-20130614|25015_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.57
# Mc/sec: 532.98
//
Query:       MMETSP0890-20130614|25017_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.5   0.0    2.9e-06   27.6   0.0    1.5  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    7.5e-05   22.9   1.9       0.26   11.9   0.0    3.0  2  PF13428.1  Tetratricopeptide repeat
    0.00012   21.5   0.9     0.0003   20.2   0.6    1.7  1  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.011   15.4   0.5       0.87    9.5   0.0    2.9  3  PF07719.12 Tetratricopeptide repeat
      0.021   14.3   0.0       0.74    9.4   0.0    2.6  2  PF00515.23 Tetratricopeptide repeat
      0.053   13.0   0.0       0.12   11.9   0.0    1.6  1  PF13661.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.3e-09   2.9e-06       2      99 ..     224     343 ..     223     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.3e-09
    PF13640.1   2 qlnrygpggflspHvDnse...sssrrltlllylndpeweeeGGelelypsd.r.............segvakevedeevvpkpgrlvlFks..........drslHrvtpvgaqgrrlaitgwf 99 
                  ql ry+pggf+s H D  +   ++ r +tll+yl +        e+ ++    +             + +++ ++++ +v p++g+++lF +          + +lH+ +p   q+++ + ++wf
  MMETSP0890-20130614|25017_1 224 QLVRYPPGGFFSLHSDVLRtglYRGREATLLFYLDNSK---CPTEFPFASLAdNaafprhdlanassFPRPHDDAATLRVFPVAGDALLFINvdlenrtrpdALALHESRPC--QQTKSIANVWF 343
                  789**************88****************666...8888888876644888888899999877788888877777****999999967766666655667777777..66777777777 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2   0.00091       2.1       9      38 ..      13      43 ..       9      46 .. 0.81
   2 !   11.9   0.0   0.00011      0.26      11      41 ..      49      79 ..      47      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00091
    PF13428.1  9 ralla.lGdpdeAiallrralalaPddaeal 38
                 ++ l+ +Gd ++A+ +l ra + +P++a a 
  MMETSP0890-20130614|25017_1 13 ALELNlRGDAAAAETWLTRASEINPTSASAA 43
                 55554269******************99875 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00011
    PF13428.1 11 llalGdpdeAiallrralalaPddaealllL 41
                 +    dpd++++++ rala +P++  a+++L
  MMETSP0890-20130614|25017_1 49 FYSERDPDRGAKACLRALAIDPNHRGARIAL 79
                 667789*********************9987 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.6   1.3e-07    0.0003      11      69 .]      14      70 ..       8      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.3e-07
    PF13414.1 11 nalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69
                  +l  +gd + A+  +++A e++p +a++ +n ++ y +   d+++ ++++ +Al++dP
  MMETSP0890-20130614|25017_1 14 LELNLRGDAAAAETWLTRASEINPTSASAAANECAFYSE-R-DPDRGAKACLRALAIDP 70
                 567889*********************************.4.69**************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.041        94      15      33 ..      20      38 ..      18      39 .. 0.90
   2 ?    9.5   0.0   0.00038      0.87      10      34 .]      48      72 ..      47      72 .. 0.92
   3 ?   -3.5   0.1       5.4   1.2e+04       1       9 [.     145     153 ..     145     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.041
                 T-HHHHHHHHHHHHHH-TT CS
   PF07719.12 15 gdyeeAleafekAleldPn 33
                 gd + A+ ++ +A e++P+
  MMETSP0890-20130614|25017_1 20 GDAAAAETWLTRASEINPT 38
                 88899*************8 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00038
                 HHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12 10 ayyklgdyeeAleafekAleldPnn 34
                 a y  +d+++ ++a+ +Al++dPn+
  MMETSP0890-20130614|25017_1 48 AFYSERDPDRGAKACLRALAIDPNH 72
                 6788999****************97 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 5.4
                  HHHHHHHHH CS
   PF07719.12   1 aealynlGl 9  
                  ++a+ +lGl
  MMETSP0890-20130614|25017_1 145 PYAWRLLGL 153
                  579999997 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.061   1.4e+02      11      33 ..      16      38 ..       8      39 .. 0.83
   2 ?    9.4   0.0   0.00032      0.74      10      34 .]      48      72 ..      47      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.061
                 HHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23 11 ylklgkydeAleyyekALelnPn 33
                 +   g+   A+    +A e+nP+
  MMETSP0890-20130614|25017_1 16 LNLRGDAAAAETWLTRASEINPT 38
                 55677888999999********7 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00032
                 HHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23 10 aylklgkydeAleyyekALelnPnn 34
                 a+++  ++d   +++ +AL ++Pn+
  MMETSP0890-20130614|25017_1 48 AFYSERDPDRGAKACLRALAIDPNH 72
                 788999999999***********97 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.2e-05      0.12       9      48 ..     219     258 ..     205     266 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.2e-05
    PF13661.1   9 frhrfaltratrgdffdpHiDadpsqlgkprflsallYLN 48 
                  ++++ +l r+ +g+ff  H+D    +l++ r+ ++l+YL 
  MMETSP0890-20130614|25017_1 219 RSESPQLVRYPPGGFFSLHSDVLRTGLYRGREATLLFYLD 258
                  6788899********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 1345.05
//
Query:       MMETSP0890-20130614|25040_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-11   42.8   1.2    3.1e-11   42.8   0.8    1.5  2  PF01124.13 MAPEG family
  ------ inclusion threshold ------
      0.042   12.3   0.0       0.07   11.6   0.0    1.3  1  PF04547.7  Calcium-activated chloride channel


Domain annotation for each model (and alignments):
>> PF01124.13  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.52   3.6e+03       7      13 ..      23      29 ..      17      38 .. 0.42
   2 !   42.8   0.8   4.6e-15   3.1e-11       4     107 ..      55     157 ..      53     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.52
   PF01124.13  7 llallll 13
                 ++++l  
  MMETSP0890-20130614|25040_1 23 VYIVLGA 29
                 2222222 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 4.6e-15
   PF01124.13   4 yagllallllylslivvkerrkakiaigegkasa..rakddalppklqraqrahgNflEylplflllvllaeltgagtglvallgaiflvaRvahalgyiag.gppp 107
                  ++++ ++++ y  + v++   +++  ++     +  ++ +++lp+k+  aqr++ N++E+lp f++ +l ++l  ++++++++l++++ ++R ++a  y    g+p 
  MMETSP0890-20130614|25040_1  55 IIVICGFITSYSLYDVMAVGCAKAEVHYMQ---KayKDLPAKLPEKAYLAQRVQTNQVEQLPGFIVGSLSCALL-VNGTAATVLALLWAIVRRLYATTYRNAiGKPL 157
                  567777777777777777777666656422...236999**********************************9.88**********************66644444 PP

>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     1e-05      0.07     132     202 ..      19      89 ..      17     106 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1e-05
    PF04547.7 132 ivlvfllmlgvfelrelvseikeakekptlasflpkilnavlitilnevYkklAkwltdlEnhrtqseyen 202
                   +lv++++lg +    + +e + + + + ++++ p+i+ ++   +   +Y+ +A+   + E h +q++y++
  MMETSP0890-20130614|25040_1  19 AILVVYIVLGAILSFAFGREPDGRLPDKIILELGPTIIVICGFITSYSLYDVMAVGCAKAEVHYMQKAYKD 89 
                  45677777777777777777777777999****************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 618.52
//
Query:       MMETSP0890-20130614|25043_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-43  148.7   0.0    2.4e-43  148.1   0.0    1.2  1  PF01370.16 NAD dependent epimerase/dehydratase family
    2.6e-09   36.0   0.0    3.4e-09   35.6   0.0    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    3.5e-09   35.8   0.0    5.1e-05   22.2   0.0    2.2  2  PF07993.7  Male sterility protein
    4.1e-08   32.3   0.0    3.2e-06   26.1   0.0    2.3  2  PF02719.10 Polysaccharide biosynthesis protein
    8.2e-08   31.3   0.0    1.2e-07   30.7   0.0    1.3  1  PF04321.12 RmlD substrate binding domain
    5.8e-06   26.3   0.0      9e-06   25.6   0.0    1.3  1  PF13460.1  NADH(P)-binding
     0.0051   16.6   0.0      0.011   15.6   0.0    1.5  1  PF00106.20 short chain dehydrogenase
  ------ inclusion threshold ------
      0.078   12.5   0.0       0.19   11.2   0.0    1.6  1  PF08659.5  KR domain


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   1.4e-46   2.4e-43       1     227 [.     118     344 ..     118     358 .. 0.90

  Alignments for each domain:
  == domain 1    score: 148.1 bits;  conditional E-value: 1.4e-46
                  EEEE--------HHHHHHHHH-TEEE...EESSCSTCCCCCCHHH...TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS--..--SSH...HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
   PF01370.16   1 ilVtGatGfiGsalveallekgyevv...nlirrtrseslatvri...rvelveldltdkdalerlfaeeqpdaVihlAaesgvdass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetpl..gplsp...YaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegeevtllgdGtqlRdflyveDvaealllvlehgd 227
                  +lVtG++Gf+Gs+lv++l+++g+ev+   nl ++++++  +++      ++++ +d+      + ++ e+  d ++hlA  +  +  +  +p ++i++ +egtln+l+ a++ ++ r+l as+se+yg+++  p  E++    +p+ p   Y+  K+ +e ++ +y+++ g+++ + r+fn +G r +++ + +v++++i ++l+++ +tl+gdG+q R f +v+D++++l+ +++ + 
  MMETSP0890-20130614|25043_1 118 VLVTGGAGFVGSNLVDKLMSEGHEVIvldNLFTGRKKN-IEHW-MghpSFQFIVGDVV-----QPIMLEV--DQIYHLACPA-SPPHYqYNPIKTIKTSTEGTLNMLGLAKRINA-RILLASTSEIYGDPEIHPQVESYWGnvNPIGPracYDEGKRVAETMMYSYQRQVGVDVRVARIFNTFGRR-MHPNDGRVVSNFIIQALQNKDITLYGDGKQTRSFQFVDDLVDGLYKLMNSNF 344
                  79**********************88899999999988.3232.24678777777765.....7788788..********97.6777769*************************.**************999978887777777777999***********************************.**********************************************999876 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     2e-12   3.4e-09       1     161 [.     119     273 ..     119     336 .. 0.75

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2e-12
   PF01073.14   1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvkt..vlegDvtdkekleealegvdvvihtaa.iidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnvkgqeilnGdEetpyesthkdaYaesKalAEklvlkan 161
                  lVtGg+GF+G++lv +L++++  +ev vld  ++ ++++  + ++  +  ++ gDv +       + +vd + h+a+ ++  + ++++ + +k   +GT n+l  +++ + r+l   S+ e+ g+  + ++ ++       +  ++ +Y e K++AE ++ +  
  MMETSP0890-20130614|25043_1 119 LVTGGAGFVGSNLVDKLMSEG--HEVIVLDNLFTGRKKNIEHWMGHPSfqFIVGDVVQP-----IMLEVDQIYHLACpASPPHYQYNPIKTIKTSTEGTLNMLGLAKRINARILL-ASTSEIYGD-PEIHPQVESYWGNVNPIGPRACYDEGKRVAETMMYSYQ 273
                  7********************..7******9988888777666666666699***9765.....56689*******944556669999999***************999988775.788888888.5556666566666677779************9987654 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   5.5e-05     0.095       1      27 [.     120     144 ..     120     156 .. 0.88
   2 !   22.2   0.0     3e-08   5.1e-05      84     211 ..     176     304 ..     169     334 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.5e-05
    PF07993.7   1 lTGaTGfLGkvllekllrtqpevkiyl 27 
                  +TG+ Gf+G+ l++kl+ + +e  +++
  MMETSP0890-20130614|25043_1 120 VTGGAGFVGSNLVDKLMSEGHE--VIV 144
                  8****************99884..554 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 3e-08
    PF07993.7  84 laeevdviihsAAtv...nfeepykellrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpntYtqsKalaEklvreasrrsglpvviiRpsiivg...esetGwiegsd 211
                  ++ evd i+h+A      + +++  + ++t ++Gt ++l lak+++  ++l  ST+ ++g+ e + +     e+   + +  g    Y + K +aE ++ +++r+ g+ v + R  +  g   +++ G + ++ 
  MMETSP0890-20130614|25043_1 176 IMLEVDQIYHLACPAsppHYQYNPIKTIKTSTEGTLNMLGLAKRINA-RILLASTSEIYGDPEIHPQV----ESYWGNVNPIGPRACYDEGKRVAETMMYSYQRQVGVDVRVARIFNTFGrrmHPNDGRVVSNF 304
                  67799*****986542225666777799***************5554.66677886555555533322....77778888888888****************************99999977767666665544 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.8e-09   3.2e-06       1     121 [.     118     223 ..     118     232 .. 0.80
   2 ?    3.8   0.0     0.011        19     134     207 ..     254     330 ..     249     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.8e-09
   PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealeelkvdvvfhaAAlKhVPlveenpleavktNvlgtenvieaaieagve 121
                  vlvtG++G +Gs+lv++++++  + i+l +    + ++ie+ +     + ++++    ++gdv     ++ ++   +vd ++h A     P  ++np++++kt   gt n++  a++ + +
  MMETSP0890-20130614|25043_1 118 VLVTGGAGFVGSNLVDKLMSEGHEVIVLDNLFTGRKKNIEHWM----GHPSFQF----IVGDV-----VQPIML--EVDQIYHLACPASPPHYQYNPIKTIKTSTEGTLNMLGLAKRINAR 223
                  89****************9998777666555555666666654....4555544....59999.....566777..8***********************************999987754 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.011
   PF02719.10 134 PtnvmGatKrlaekllqalaeeseekk.tkfvvvRfGNVlg.SrGSviplFkkqikeggpvtv.TdpemtRyfmtie 207
                  P   +   Kr+ae ++ +++++ + +   + ++  fG  +    G v+  F  q  +++++t+  d + tR f  ++
  MMETSP0890-20130614|25043_1 254 PRACYDEGKRVAETMMYSYQRQVGVDVrVARIFNTFGRRMHpNDGRVVSNFIIQALQNKDITLyGDGKQTRSFQFVD 330
                  56677789************999533235556667888776256******************834666677665555 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   7.3e-11   1.2e-07       2     240 ..     117     377 ..     116     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 7.3e-11
                  EEEEE--------HHHHHH----EEEEE--TT...............T--TT-HHHHHHHHHHH--SEEEE------HHHHHH-HHHHHHHHT---HHHHHHHHH---EEEEEEEGGG----.....-SS-B-TTS-----S----TTT---HHHHHH-SSEEE.EEE-SEE--........---HHHHHHH-----SEEEEESS..-B---EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH-----.EEEE CS
   PF04321.12   2 rilvtGanGqlGteLaralkeegvevvaldre...............eldltdpeavaalvkeakpdvvvnaAAytavdkaEseeeeayavnaegpenlAeaaaavgallihiSTdyVFdGe.....kkrpYeeddetaPlnvYGrtKlaGEqavlaanpkali.vRtawvyge.......kgknfvktmlrlaaereelkvvaD..qlgsPTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadgeevkp 240
                  r+lvtG+ G +G++L+++l +eg+ev+ ld+                ++++   + v+ ++ e   d ++++A      +   ++ ++ +   eg+ n+  +a++++a+++  ST  ++         ++ + + ++ +P+  Y + K+  E +  +++ ++ + vR+a ++ +       ++   v++++ +a +++ +++  D  q+ s   ++dl d l++l++   +        +l n  e + + fA+ i + +g+++ ++  
  MMETSP0890-20130614|25043_1 117 RVLVTGGAGFVGSNLVDKLMSEGHEVIVLDNLftgrkkniehwmghpSFQFIVGDVVQPIMLE--VDQIYHLACPASPPHYQYNPIKTIKTSTEGTLNMLGLAKRINARILLASTSEIYGDPeihpqVESYWGNVNPIGPRACYDEGKRVAETMMYSYQRQVGVdVRVARIFNTfgrrmhpNDGRVVSNFIIQALQNKDITLYGDgkQTRSFQFVDDLVDGLYKLMNSNFS-----LPVNLGNPDEYTVASFAHTIKHLTGSNS-RIIS 377
                  79***************************8878999999999999999999999999999877..568**************************************************9665687756667999***********************99977666999999988565765555578888888888888888887766888889999999999999998887.....5578899999999999999988888866.4443 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.3e-09     9e-06       1     106 [.     118     237 ..     118     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 5.3e-09
    PF13460.1   1 IaviGAtGktGrrivkellarghevtalv....Rnpsklpe...ssgvtivkkDlfdledlaealagvdvvvdaf.garpe..d..........regvkhlldalkaagvrrlvvvsaaglyrdkp 106
                  ++v+G+ G +G+ +v +l+++ghev +l      +++++++   +++++++++D+ ++      + +vd +++++ +a p+  +          +eg+ ++l ++k+ ++ r+++ s+  +y d++
  MMETSP0890-20130614|25043_1 118 VLVTGGAGFVGSNLVDKLMSEGHEVIVLDnlftGRKKNIEHwmgHPSFQFIVGDVVQP-----IMLEVDQIYHLAcPASPPhyQynpiktiktsTEGTLNMLGLAKRINA-RILLASTSEIYGDPE 237
                  79***********************987666655666799999999999999999999.....55678888877754444444245555665668899999999999995.999999999999765 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.2e-06     0.011       3      32 ..     118     147 ..     117     175 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.2e-06
                  EEE---------HHHHHHHHHSSEEEEEEE CS
   PF00106.20   3 vliTGGlgglGlalArwLveegarhlvlvs 32 
                  vl+TGG+g +G  l+++L++eg +++vl  
  MMETSP0890-20130614|25043_1 118 VLVTGGAGFVGSNLVDKLMSEGHEVIVLDN 147
                  8***********************999975 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.19       3      30 ..     118     145 ..     117     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
                  EEE----SHHHHHHHHHHHH-----EEE CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvl 30 
                  +LvtGG+g +G  l++ L+++g + +vl
  MMETSP0890-20130614|25043_1 118 VLVTGGAGFVGSNLVDKLMSEGHEVIVL 145
                  79**********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.41s 00:00:01.24 Elapsed: 00:00:00.64
# Mc/sec: 1767.31
//
Query:       MMETSP0890-20130614|25056_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   13.7   0.4      0.042   13.5   0.3    1.1  1  PF05698.9 Bacterial trigger factor protein (TF) C-terminus


Domain annotation for each model (and alignments):
>> PF05698.9  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   3.1e-06     0.042      47      90 ..       8      51 ..       4      54 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHHHC-......HHHHHHHHHT.HCCCHCHHCHHHH CS
    PF05698.9 47 eeeierllrqflqqleqqgldleeylslsgs.seeelreelkeeA 90
                 e   +  ++++ +ql++qg dl+e+  +sg   ++++r+e+++++
  MMETSP0890-20130614|25056_1  8 ELSLHEARKEAVEQLKRQGADLSEV-DISGGtAKQDARTEMEKAV 51
                 5566788999**************7.6666659999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       754  (0.0551492); expected 273.4 (0.02)
Passed bias filter:                      624  (0.0456407); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 261.03
//
Query:       MMETSP0890-20130614|25081_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.2   1.9    1.6e-12   47.2   1.3    2.2  1  PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
      3e-09   37.4   0.2      4e-09   37.0   0.1    1.2  1  PF00034.16 Cytochrome c


Domain annotation for each model (and alignments):
>> PF13442.1  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   1.3   2.3e-16   1.6e-12       3      66 ..      22     107 ..      20     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 2.3e-16
                  CH---HHHHHCTTTTH---TT-..........--TTSH.HHHHHHHHCHHH-------............--TTT--HHHHHHHHHH CS
    PF13442.1   3 aaaGaalynanCaaCHgsggag..........pslagd.awepdalkkiiknGkgaMP............afggqlsdeeiealaaY 66 
                  +++G +l++anCa+CH+ gg++          ++l+ d +++ ++l ++i +G+gaMP             fg++ls+eei  la+Y
  MMETSP0890-20130614|25081_1  22 VEEGTKLFEANCASCHA-GGGNivarqktlttANLKADgYTTDEKLSNMIAKGVGAMPgfgqdcapkyacTFGTRLSEEEIVTLAQY 107
                  689*************9.5554577887888888888866667***************55555555555555556666666666666 PP

>> PF00034.16  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   5.9e-13     4e-09       2      88 ..      23     109 ..      22     112 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 5.9e-13
                  --HHHHHC-TTTTT--SSS----S...--HCCHHHHT-HHHHHHHHHH------SS-GGGHHHHGGGGGGG-.......---HHHHHHHHHHHH CS
   PF00034.16   2 arGkelftanCaaCHgaggggakqggapnlsgaaerysadsiaairanprqvsapavafekkpltaempark.......qltdqeiadlaaYlm 88 
                  ++G +lf+anCa+CH+ gg+  + +   +l++a+ ++++ +  +  +n       a+   ++p ++++ a+k       +l+++ei  la Y++
  MMETSP0890-20130614|25081_1  23 EEGTKLFEANCASCHAGGGNIVARQ--KTLTTANLKADGYTTDEKLSNM-----IAKGVGAMPGFGQDCAPKyactfgtRLSEEEIVTLAQYVQ 109
                  79*****99***********99998..9999999988776666666665.....47788889999999999999******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 425.62
//
Query:       MMETSP0890-20130614|25075_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-06   26.6   0.3    8.1e-06   25.3   0.2    1.8  1  PF00704.23 Glycosyl hydrolases family 18
  ------ inclusion threshold ------
      0.059   12.3   0.0        0.1   11.5   0.0    1.3  1  PF04452.9  RNA methyltransferase


Domain annotation for each model (and alignments):
>> PF00704.23  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.2   1.2e-09   8.1e-06       5     170 ..      26     177 ..      22     301 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.2e-09
                  EEEEGGGGGSCSSCCGGGSHTTT-SEEEEECCEEBTTBCEEBET-TTCSSTTHHHHHHHHHHGH.CTHTT-EEEEEE---TTTTHHHHHHHSSHHHHHHHHHHHHHHHHHHT...----EE--SSS-GC.....TTHHHHHHHHHHHHHHHHHHHHHHCS----EEEEEBSSH CS
   PF00704.23   5 gyytswgnygegkflvkdidpdklthinyafanidgngtslkgnaadtnedpakgnfeqlkklk.kknpgvkvllSiGGwtesksgfsslasndasrktFidsavdflkkyg...fDGiDldweypgnkga...aedkenytallkelrealkkeakadkgylLtaavpaspd 170
                  +y+t+ +  +e+   v+ +    ++ i+ af +  ++  s++  +   ++ + k+  + +k+++ +k  +v  l SiGGw    +g +  +  d        s  ++++k++   fDGiD d+e   + ++   +   ++  +l+ ++  a ++     +gy+  aa pa+ +
  MMETSP0890-20130614|25075_1  26 AYATDRS-LRED-KIVRACCEHGVNIIIWAFTHFEFDDFSNE--KKINPTFDLKNAERTIKRIRkEKDTQVIHLTSIGGW----NGPHPSTRIDG------VSWFKIWEKWNnniFDGIDWDLEGHDD-PSvptTILDDSILNLMHDFTLAAQA-----NGYIVGAA-PAQSY 177
                  4555543.3444.24555555889999******999999976..778999999999999****99***************....46666665554......58999*******************944.4467766667777777777755555.....38888888.55444 PP

>> PF04452.9  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.5e-05       0.1      57     105 ..      17      65 ..       4      79 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.5e-05
                  -S-SSEEEEEEE---HHHHHHHHHHHHH----EEEEEE-TT------HH CS
    PF04452.9  57 keepekitlaqalpkgdklelilqkatElGvseivplisersvvkldek 105
                  + +++++++a a  ++ + ++i++ ++E Gv+ i+  ++++     +++
  MMETSP0890-20130614|25075_1  17 TLPSSRLIIAYATDRSLREDKIVRACCEHGVNIIIWAFTHFEFDDFSNE 65 
                  2333449****************************99999886554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.70
# Mc/sec: 1225.57
//
Query:       MMETSP0890-20130614|25082_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.55
# Mc/sec: 745.05
//
Query:       MMETSP0890-20130614|25085_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   16.3   4.3      0.013   15.3   3.0    1.6  1  PF10338.4 Protein of unknown function (DUF2423)


Domain annotation for each model (and alignments):
>> PF10338.4  Protein of unknown function (DUF2423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.0   9.7e-07     0.013       3      40 ..       2      39 ..       1      43 [. 0.95

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.7e-07
    PF10338.4  3 KSlRSssklraksvkRkgvFakvedaRaeRLsaKLkee 40
                 K++RS+ k++++s  R++  +kv    +e+ sa+Lk++
  MMETSP0890-20130614|25085_1  2 KGIRSKIKKKNRSYMRATIGEKVRTSQIEAASARLKAK 39
                 9**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       578  (0.0422762); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.60
# Mc/sec: 607.08
//
Query:       MMETSP0890-20130614|25090_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 521.79
//
Query:       MMETSP0890-20130614|25102_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.62
# Mc/sec: 1028.11
//
Query:       MMETSP0890-20130614|25114_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   33.7   5.4    0.00014   21.2   0.3    2.6  2  PF07699.8  GCC2 and GCC3
  ------ inclusion threshold ------
       0.11   12.0   1.8       0.15   11.5   1.2    1.2  1  PF00757.15 Furin-like cysteine rich region
        4.7    7.1   9.9       0.79    9.5   1.7    2.8  3  PF00053.19 Laminin EGF-like (Domains III and V)


Domain annotation for each model (and alignments):
>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   3.1e-08   0.00014       6      41 ..      61      99 ..      52     105 .. 0.75
   2 !   14.3   0.9   4.3e-06     0.019       9      34 ..     103     132 ..      95     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.1e-08
    PF07699.8  6 kgnkkCepCprGtYkneegqk...kCiaCppgttTskkg 41
                 +++++C+ Cp G + +  g +   +C  Cppg++ s  g
  MMETSP0890-20130614|25114_1 61 ESLNECTDCPLGRFNDVLGAQsfdDCRLCPPGKIGSAIG 99
                 4569**********9665555555********9877666 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.3e-06
    PF07699.8   9 kkCe.pCprGtYkneegqk...kCiaCppg 34 
                  k+C+  Cp G+++ e g +   +C+ Cp +
  MMETSP0890-20130614|25114_1 103 KECSaSCPSGYFSREFGLTsdtECELCPEN 132
                  678636*******887776667******98 PP

>> PF00757.15  Furin-like cysteine rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   3.4e-05      0.15      78     142 ..      65     131 ..      55     139 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.4e-05
                  -EESS--TT--BBTTB---TTSTTSSSS-------EEETTEEESS-----EE-....TTS-BEE---- CS
   PF00757.15  78 tCvekCPpkkykfgarCvtekeCpklskeeeeeelvieegeCvlecpsgkteve...keskkCekCeg 142
                  +C ++CP ++++      +++ C      +  + + + ++eC ++cpsg+ ++e   ++ ++Ce C +
  MMETSP0890-20130614|25114_1  65 EC-TDCPLGRFNDVLGAQSFDDCRLCPPGKIGSAIGLISKECSASCPSGYFSREfglTSDTECELCPE 131
                  55.4699999998777777799996656666677777899************9999999999999975 PP

>> PF00053.19  Laminin EGF-like (Domains III and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.2      0.62   2.8e+03      30      42 ..      65      77 ..      62      89 .. 0.73
   2 ?    0.5   0.1      0.12   5.4e+02      30      41 ..      85      96 ..      81     105 .. 0.76
   3 ?    9.5   1.7   0.00017      0.79      12      33 ..     108     140 ..      99     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.62
                 -S-EE----B-TT CS
   PF00053.19 30 kCdrCkpgyyglp 42
                 +C  C  g +++ 
  MMETSP0890-20130614|25114_1 65 ECTDCPLGRFNDV 77
                 6999988888764 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
                 -S-EE----B-T CS
   PF00053.19 30 kCdrCkpgyygl 41
                 +C  C pg +g 
  MMETSP0890-20130614|25114_1 85 DCRLCPPGKIGS 96
                 688888887765 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00017
                  -B-S..........----BS.BSTTEE---S-E CS
   PF00053.19  12 sCds..........stgqCl.CkenveGrkCdr 33 
                  sC s          s+ +C+ C en+ G +C++
  MMETSP0890-20130614|25114_1 108 SCPSgyfsrefgltSDTECElCPENYRGWQCEE 140
                  444477777777778899*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.42s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 895.24
//
Query:       MMETSP0890-20130614|25115_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-39  132.7   0.1      7e-34  116.5   0.0    2.2  2  PF01596.12 O-methyltransferase
    1.6e-12   48.0   0.2    5.1e-12   46.4   0.2    1.9  1  PF13578.1  Methyltransferase domain
    4.5e-07   30.3   0.1    1.2e-06   28.9   0.0    1.8  2  PF12847.2  Methyltransferase domain
    1.3e-06   27.9   0.0    2.6e-06   26.9   0.0    1.6  1  PF13847.1  Methyltransferase domain
    3.6e-05   23.2   0.0    5.7e-05   22.6   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    9.9e-05   22.2   0.0    0.00021   21.1   0.0    1.5  1  PF13659.1  Methyltransferase domain
    0.00068   18.9   0.0     0.0012   18.0   0.0    1.4  1  PF04989.7  Cephalosporin hydroxylase
     0.0017   18.5   0.0     0.0035   17.5   0.0    1.6  1  PF13649.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.066   13.5   0.1       0.25   11.7   0.0    2.0  2  PF08242.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   4.6e-37     7e-34       9     168 ..     113     278 ..     105     298 .. 0.86
   2 !   14.1   0.0   1.1e-05     0.016     165     203 ..     323     361 ..     311     363 .. 0.82

  Alignments for each domain:
  == domain 1    score: 116.5 bits;  conditional E-value: 4.6e-37
   PF01596.12   9 ellkeLr.eatakkpglsamqvspeegqfLsllvklvgakkvleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagved....kielilgdalkvLeelvedkkqgefDlifvDaDkssYknyyeklle..LvkvGgliaiDntLweGkvaeedde 168
                   +lk+ r +a a+ p  ++m   p +g+fL++l +++gak+vle+G+f Gy  L  a al +dG++i++d d+ aaei+++ ++ a+ ++    ki+li++d+ + L  l + ++   fDl+ +DaDk++Y    + l++  L+++G +++ DntLw+G v+  d+ 
  MMETSP0890-20130614|25115_1 113 GVLKKARlDAMARFPHAAHMLCGPIQGKFLKMLCQISGAKRVLELGTFCGYGSLWLASALGKDGQVITVDRDTRAAEIAQTHFNAASTHHpdwaKIHLIISDTGEFLS-LQNLQSYEPFDLVVLDADKKGYAAAVDSLFQahLLRTGSILVADNTLWKGAVLGFDKA 278
                  556655534566778899********************************************************************998555559********99984.555555668******************997444******************9977654 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.1e-05
   PF01596.12 165 eddeepetvavlelnkklaeDeRveisllpvgDGitlar 203
                  e  +++  +a++e+n k+++ +R++  llp++DG+t+ar
  MMETSP0890-20130614|25115_1 323 ERRDRALLQAMHEFNIKIRKHPRLDQLLLPLRDGLTVAR 361
                  344555556699*************************98 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.2   3.4e-15   5.1e-12       1     106 []     155     266 ..     155     266 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 3.4e-15
    PF13578.1   1 vEiGvysGvstlvllqalkrngagrlysvdpdpgaeeaaalaee......agladr..vrllkgdseeala..sla.dgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                  +E+G+++G+ +l+l++al + g  ++++vd d    +aa++a++      ++  d+  ++l+ +d  e l+  +l+  +++Dl+++D+++++ a++ d     ++l+ g++++ d++
  MMETSP0890-20130614|25115_1 155 LELGTFCGYGSLWLASALGKDG--QVITVDRDT---RAAEIAQThfnaasTHHPDWakIHLIISDTGEFLSlqNLQsYEPFDLVVLDADKKGYAAAVDSLFQAHLLRTGSILVADNT 266
                  7******************999..6********...8888888755444433344345888899998876633555778************999999999999***********986 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     8e-10   1.2e-06       3     109 ..     152     263 ..     150     266 .. 0.78
   2 ?   -2.3   0.0       3.9   5.9e+03      50      50 ..     303     303 ..     267     356 .. 0.51

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 8e-10
    PF12847.2   3 krilDlGcGtGslslelar.lrpgakvvgvDpseeslelarena....ksldle....eriellqgda..keelsller...fDavllkgltldallaldeprrvlealp..kllkpggrlvi 109
                  kr+l+lG+  G+ sl+la+ l ++++v+ vD++  ++e+a+ +          +     +i+l+ +d   +  l++l+    fD+v+l+  +   + a       +++l   +ll+ g++lv 
  MMETSP0890-20130614|25115_1 152 KRVLELGTFCGYGSLWLASaLGKDGQVITVDRDTRAAEIAQTHFnaasT----HhpdwAKIHLIISDTgeFLSLQNLQSyepFDLVVLDA-DKKGYAAA------VDSLFqaHLLRTGSILVA 263
                  79*****999999999999999*******************98843321....23334777788888766444444444666******99.77778888......888877799999999986 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.9
    PF12847.2  50 l 50 
                  l
  MMETSP0890-20130614|25115_1 303 L 303
                  2 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.7e-09   2.6e-06       3      90 ..     150     246 ..     148     322 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.7e-09
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke...raqklgfe..nveFiqgdiee.lekl.le..esfDlvisnevlnaladpq 90 
                   +++vl+lG+  Gy +l la+ lg++++v+ +D++  a e A++    a+ ++ +  +++ i++d  e l+ + l+  e+fDlv+ ++     a+  
  MMETSP0890-20130614|25115_1 150 GAKRVLELGTFCGYGSLWLASALGKDGQVITVDRDTRAAEIAQThfnAASTHHPDwaKIHLIISDTGEfLSLQnLQsyEPFDLVVLDADKKGYAAAV 246
                  6899*****8888888888888**********************7754556666688******999999998888899*******996553333333 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.7e-08   5.7e-05      64     133 ..     140     215 ..     110     246 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 3.7e-08
                  HHHHHTT.--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--.....SEEEE---- CS
   PF01135.14  64 lalelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.....nvivvvgDG 133
                  ++l++l  ++  +rvLe+G+ +Gy +  la  +g++g+v++++r  + +e a+ + ++  ++     +++++++D 
  MMETSP0890-20130614|25115_1 140 KFLKMLCqISGAKRVLELGTFCGYGSLWLASALGKDGQVITVDRDTRAAEIAQTHFNAASTHhpdwaKIHLIISDT 215
                  5555554599999**************************************9999998887777888888888884 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07   0.00021       2      78 ..     152     237 ..     151     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.4e-07
    PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaraglaer....vrvrqgdlrdl...aellragsfdlvvtnp 78 
                   rvl++g+ +G+  l+++ +l  + +++ v+ d raa++a++ +  a+ +++    ++++ +d+ ++   ++l + ++fdlvv + 
  MMETSP0890-20130614|25115_1 152 KRVLELGTFCGYGSLWLASALgkDGQVITVDRDTRAAEIAQTHFNAASTHHPdwakIHLIISDTGEFlslQNLQSYEPFDLVVLDA 237
                  59*****999999999998888*******************9988877643333347777777655522143334499****9986 PP

>> PF04989.7  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.2e-07    0.0012      36     148 ..     154     266 ..     144     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 8.2e-07
    PF04989.7  36 iiEtGiahGGSllflasllelleekgkVlgiDidirehn......reaieahplakrieliqgssvdaeiieqvkelaeeakkvlvilDsdHthehvlaeLea.yaplvseGsYlvveDt 148
                  ++E+G++ G + l+las    l+++g+V+++D+d r+ +      ++a+++hp   +i+li ++  +   ++++++    +   lv+lD+d  +    a+  +  a+l+++Gs lv   t
  MMETSP0890-20130614|25115_1 154 VLELGTFCGYGSLWLASA---LGKDGQVITVDRDTRAAEiaqthfNAASTHHPDWAKIHLIISDTGEFLSLQNLQSY---EPFDLVVLDADK-KGYAAAVDSLfQAHLLRTGSILVADNT 266
                  79*******99***9985...5799*********987651111115677889*********9999998888887777...333488899993.333333333336788999987776655 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.3e-06    0.0035       1      73 [.     154     235 ..     154     301 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.3e-06
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss.kgl......kvkfvqadaral.p....feegefdlvvc 73 
                  +l+lG   G +   l+ al  g++ +vi vD +++a e a++++++ +        k++ +++d  ++ +    ++ ++fdlvv+
  MMETSP0890-20130614|25115_1 154 VLELGTFCGYGSLWLASAL--GKDGQVITVDRDTRAAEIAQTHFNAaS-ThhpdwaKIHLIISDTGEFlSlqnlQSYEPFDLVVL 235
                  5777766666677777777..7779****************9998852.33568889999999994431233558999*****98 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.25       1      71 [.     155     234 ..     155     237 .. 0.82
   2 ?   -2.9   0.0       5.9     9e+03      36      62 ..     289     315 ..     283     326 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00016
    PF08242.7   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.........ssfDvvv 71 
                  Le+G+  G  +  l+ +l +d +++ vD +++a e a+ ++++ + ++ ++ ++  +  + + +          + fD+vv
  MMETSP0890-20130614|25115_1 155 LELGTFCGYGSLWLASALgKDGQVITVDRDTRAAEIAQTHFNAASTHHPDWAKIHLIISD-TGEFlslqnlqsyEPFDLVV 234
                  78887777777788888879*************************999888888866533.33336999999999999998 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.9
    PF08242.7  36 akeklakrennnnnnvnlealdlldld 62 
                   +e++a++e+++++  +  + dl +++
  MMETSP0890-20130614|25115_1 289 QREQIAREEARHFALSQGTDPDLAERE 315
                  567777777777777777666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.78
# Mc/sec: 1133.66
//
Query:       MMETSP0890-20130614|25122_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-07   28.8   0.0    1.8e-06   27.9   0.0    1.4  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    6.2e-06   25.8   0.0    1.1e-05   25.1   0.0    1.5  1  PF13410.1  Glutathione S-transferase, C-terminal domain
      0.001   18.8   0.0     0.0019   18.0   0.0    1.4  1  PF13409.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.046   13.5   0.0    1.6  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.2e-10   1.8e-06       7      64 ..      16      74 ..      12      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.2e-10
                 SHHHHHHHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE----...EEESHHHHH CS
    PF13417.1  7 SpyarkvrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLeddge...vltdSlvIi 64
                 +p+++ v +a+e++g  ++l ++t+++k+ +ll+l   g +P+L  +++   ++t+S+ I+
  MMETSP0890-20130614|25122_1 16 CPFCHYVAVAMELAGKKFTLKPTTKEQKPHWLLDLG--GSMPCLAENEDglnAITESAKIA 74
                 ************************************..9*****55533346******997 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.2e-09   1.1e-05       7      69 .]     111     186 ..      71     186 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.2e-09
                  -GGGTT-THGGG-----......-SS..----..---HHHHHHHHHHHHHHHHH---....---TT----HHHHHH CS
    PF13410.1   7 araqlraaLdaleahLa......dgp.fllGd..rpslaDialapflvrldaagpgl....direayPnlrawler 69 
                   +++l aaLd+le++L+      +++ f+ G+  +++l D+ +a+ l  l +ag ++       e+yPnl  ++++
  MMETSP0890-20130614|25122_1 111 LEEKLLAALDLLEKRLTelkgdgQDVtFFSGSsiTLGLSDASIATKLYVLTVAGEHFkdykVSSERYPNLLSYMQA 186
                  7899*************888755333899999**********************9987554444*********997 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.6e-07    0.0019       2      64 ..      16      74 ..      15      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.6e-07
                 -HHHHHHHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.-.---.EEESHHHHH CS
    PF13409.1  2 cPwahRvlialalkgledeisvvplepkgfekseellalsprgtVPvLwdk.dgt.vineSseIl 64
                 cP++h v +a++l+g  ++++++    + ++k+ +ll+l   g+ P+L    dg   i+eS+ I+
  MMETSP0890-20130614|25122_1 16 CPFCHYVAVAMELAGKKFTLKPT----TKEQKPHWLLDLG--GSMPCLAENeDGLnAITESAKIA 74
                 **********************9....4578888999976..579****8644448999**9996 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05     0.046      11      94 ..      95     190 ..      77     191 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
                  HHHSTTH.HHHHHHHHHHHHHHHHHHHHHHHHHHH.......TSSSSSSSS-BH..HHHHHHHHHHHHHHHTTTTT.....HTT-HHHHHHHHHHHHS CS
   PF00043.20  11 lfyvkkeaaekdeaeveeakrkvlevlealeeels.......gkkylvGdkltl..ADialfpalewlqrldgnfl.....eeefPklkawlkriaar 94 
                  ++++ k++++ d+    e ++k+l++l+ le++l        + +++ G+++tl   D  ++  l +l   +  f+     +e +P+l ++++  ++ 
  MMETSP0890-20130614|25122_1  95 FPAIAKFIKSIDA--NLELEEKLLAALDLLEKRLTelkgdgqDVTFFSGSSITLglSDASIATKLYVLTVAGEHFKdykvsSERYPNLLSYMQAAFQT 190
                  4455555444444..7899******************9**9999******9986227******999999999999999*************9987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.79
# Mc/sec: 652.17
//
Query:       MMETSP0890-20130614|25124_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.80
# Mc/sec: 727.89
//
Query:       MMETSP0890-20130614|25134_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   13.6   0.0       0.04   13.6   0.0    1.0  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.9e-06      0.04      19      56 ..      11      39 ..       2      49 .] 0.72

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.9e-06
                 CHHHHHHHTCG-SEEEEECC-TCHHHHHHCHHCTTT-E CS
   PF03372.18 19 dqladllqsedpDvllLQEvdedplsellatglasglg 56
                 d + ++lq  ++D ++LQE +          g a++++
  MMETSP0890-20130614|25134_1 11 DLIGNWLQLRGYDFVALQELN---------GGGAKQYD 39
                 34999***************9.........55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 183.47
//
Query:       MMETSP0890-20130614|25136_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 216.81
//
Query:       MMETSP0890-20130614|25131_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-28   99.3   0.0    2.3e-26   92.6   0.0    2.7  2  PF01189.12 NOL1/NOP2/sun family
     0.0003   20.6   0.0    0.00078   19.3   0.0    1.8  1  PF13659.1  Methyltransferase domain
    0.00032   20.6   0.0    0.00059   19.7   0.0    1.4  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF01189.12  NOL1/NOP2/sun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   5.1e-30   2.3e-26      63     237 ..     121     293 ..     118     302 .. 0.89
   2 ?   -0.9   0.0      0.17   7.8e+02     261     281 ..     368     388 ..     348     390 .. 0.71

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 5.1e-30
                  ----EEE--TTT---HHHH------EEEEES------HHHHHH.....H-T.T-EEEEE-SSCCCHHHHHHHHHH-----EEE-.-----GGGT-----BSEEEEE--------TTT-TTHHHH--TTHHHHHHHHHHHHHHHHGGGB....-----EEEEES---TTTTHHHHHHHHHH CS
   PF01189.12  63 engavvvqdassqldaiaLapqedelilDlcaapgGKtthiae.....lmknegevvAvdrnkqrlkrvaanqqrlGvfnitvveedatqaaqkllgsefdrilldaPcsgtgvirrepkikwlrreadiaqlaelqkelLkaaidlvgidtkeggvlvYstCsvlveeneagiklflqk 237
                  e+g ++ q a s+ +   L+ ++ e++lD caapg+K + i e     +  + g++vA+d ++ r+  +  +++rl      v + da+q         fdril d Pcsg g+ r+ p +  + +++    l+ lq  + k a  l+    k+gg+lvYstCs+++ enea++++ l +
  MMETSP0890-20130614|25131_1 121 EAGEITRQEAVSMAPPLFLQAKPGEFVLDTCAAPGSKSSQIIEeladtDGTKDGFLVANDSSLPRAHTLVHQIKRLSSSRYAVTHCDARQF---PGTACFDRILCDVPCSGDGTARKLPPMIHNWNSNRALSLHALQTDIAKRAFGLL----KQGGRLVYSTCSLNPIENEAVVAALLAA 293
                  6899999*******************************98764322223445899*****************************7777777...66668*********************999999**********************....***********************99976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.17
                  ...--B-----------EEEE CS
   PF01189.12 261 vkanlqllPhelnedgfffak 281
                  + +++++lPh +   +ff+a 
  MMETSP0890-20130614|25131_1 368 LVKTMRFLPHDDDSGAFFVAV 388
                  447899*****9999999985 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-07   0.00078      49     117 .]     198     277 ..      94     277 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.7e-07
    PF13659.1  49 aervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrd...............lydafleaaarllkpgGvlvlivpa 117
                  ++r  v+++d+r+++    +++fd +++++P  ++ g+ ++l +               l +   ++a+ llk+gG+lv+ +++
  MMETSP0890-20130614|25131_1 198 SSRYAVTHCDARQFP---GTACFDRILCDVPCSGD-GTARKLPPmihnwnsnralslhaLQTDIAKRAFGLLKQGGRLVYSTCS 277
                  467899*****9999...789***********866.33333333455555566677777999******************9985 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.3e-07   0.00059      20     142 ..     140     279 ..     105     348 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.3e-07
   PF01728.14  20 kvgkgktvvDlgaaPGgwsqvllqrl.....geagkvvavDlqpmaplqgvttlqgditdpstqekilealeege....rkvdlvlsDg..........apdvtgvhdldeyislqlilaalk.lalellkpggnfvlklfk.g 142
                  + + g  v+D +aaPG+ s  + ++l     ++ g +va D      l++++tl   i   s  +   ++++  +     ++d +l+D+           p +  +++   ++sl+ +   +   a+ llk+gg++v  ++  +
  MMETSP0890-20130614|25131_1 140 QAKPGEFVLDTCAAPGSKSSQIIEELadtdgTKDGFLVANDSS----LPRAHTLVHQIKRLSSSRYAVTHCDARQfpgtACFDRILCDVpcsgdgtarkLPPMIHNWNSNRALSLHALQTDIAkRAFGLLKQGGRLVYSTCSlN 279
                  3345599**********99999999987777667777777776....578888888885555555444444332245559*********99999999998888889999999999988888888999999*****999887741 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:00.93
# Mc/sec: 1651.68
//
Query:       MMETSP0890-20130614|25150_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0043   16.7   1.8      0.022   14.5   0.4    2.4  2  PF07719.12 Tetratricopeptide repeat
     0.0055   16.2   0.7      0.015   14.7   0.5    1.7  1  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.028   14.9   0.3       0.19   12.3   0.2    2.2  2  PF13432.1  Tetratricopeptide repeat
      0.039   13.7   0.4       0.96    9.3   0.1    2.3  2  PF13424.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.4   6.4e-06     0.022       6      29 ..     309     332 ..     305     336 .. 0.92
   2 ?    0.3   0.0      0.23   7.9e+02       2      18 ..     366     383 ..     365     387 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.4e-06
                  HHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAle 29 
                  n G+ +yk+++y++A++ fe Al 
  MMETSP0890-20130614|25150_1 309 NAGYTAYKNKEYDRARDEFEDALD 332
                  78********************96 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.23
                  HHHHHHHHHHHHTT-H.H CS
   PF07719.12   2 ealynlGlayyklgdy.e 18 
                  ++l+ l++ ++ +gd+ +
  MMETSP0890-20130614|25150_1 366 KLLNFLARTLELMGDHeA 383
                  67999**********955 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   4.4e-06     0.015       7      57 ..     308     385 ..     302     391 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-06
    PF13414.1   7 kelGnalfkegdydeAieayekAlel....dpnnae.......................lyynlAlaylklgkdyeeA 57 
                   ++G+ ++k+++yd A +++e Al+     + +na                        l++ lA +++ +g++  +A
  MMETSP0890-20130614|25150_1 308 QNAGYTAYKNKEYDRARDEFEDALDQharhCRHNAThfqnsgnrvpsrihverdkvrvkLLNFLARTLELMGDHEAKA 385
                  699*********************973333344444555556677778888888888888888999999999754444 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   5.6e-05      0.19       4      27 ..     311     334 ..     309     349 .. 0.84
   2 ?   -0.5   0.0      0.56   1.9e+03      32      54 ..     366     388 ..     358     394 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.6e-05
    PF13432.1   4 ArallraGdydeAlaaleaalala 27 
                  +  ++++++yd+A++ +e+al+++
  MMETSP0890-20130614|25150_1 311 GYTAYKNKEYDRARDEFEDALDQH 334
                  7889*****************998 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.56
    PF13432.1  32 eallllaeallrlgrldeAaall 54 
                    l +la++l  +g++++ aa +
  MMETSP0890-20130614|25150_1 366 KLLNFLARTLELMGDHEAKAARI 388
                  567899*****999999877665 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00028      0.96      10      34 ..     309     333 ..     299     345 .. 0.59
   2 ?    2.1   0.0      0.05   1.7e+02      46      64 ..     365     383 ..     357     403 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00028
    PF13424.1  10 nlalvlrrlgdydeAlelyekalel 34 
                  n + + ++ ++yd+A++ +e al+ 
  MMETSP0890-20130614|25150_1 309 NAGYTAYKNKEYDRARDEFEDALDQ 333
                  4444445556666666666666665 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.05
    PF13424.1  46 aralnnlanlylalgdyde 64 
                  +++ln la++++ +gd+++
  MMETSP0890-20130614|25150_1 365 VKLLNFLARTLELMGDHEA 383
                  5677888888888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.66
# Mc/sec: 1492.28
//
Query:       MMETSP0890-20130614|25158_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-14   52.7   0.0    5.1e-14   52.4   0.0    1.1  1  PF00581.15 Rhodanese-like domain


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   3.7e-18   5.1e-14       4     102 ..      12      94 ..       9     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 3.7e-18
   PF00581.15   4 elkellekekvvllDvRspeeyekghIpgAvnvpldslypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyv 102
                  ++k++  +++++l+DvR+p+e+++gh   Avnvp+            ++lae  +  +  l+ +k+ vv+c++g r++ a +l     l++ g  +v++
  MMETSP0890-20130614|25158_1  12 DAKSKVANGEALLVDVREPNEWAEGHFAKAVNVPY-----------LSQLAEGGKIPEELLNANKPLVVHCKMGGRAKKASEL-----LAASGASTVCL 94 
                  67888878***************************...........999**********************************.....66667766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.60
# Mc/sec: 443.33
//
Query:       MMETSP0890-20130614|25216_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   17.8   0.2     0.0013   17.8   0.1    1.1  1  PF00294.19 pfkB family carbohydrate kinase
     0.0062   16.0   0.4     0.0074   15.8   0.2    1.3  1  PF04127.10 DNA / pantothenate metabolism flavoprotein
  ------ inclusion threshold ------
       0.12   11.2   0.2       0.14   10.9   0.1    1.0  1  PF04029.9  2-phosphosulpholactate phosphatase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.9e-07    0.0013      26      66 ..      24      65 ..       9      73 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.9e-07
                 -.E-SEEEEE------HHHHHHHH----EEEEEEE--TT.-H CS
   PF00294.19 26 v.evktvekgaGGagaNvavalarlggevafigavGddkfge 66
                 + + ++v+ + GG ++N+a a+ r g++v++++a+ + ++++
  MMETSP0890-20130614|25216_1 24 HyHDNKVVVTSGGVARNIAEAAGRAGANVTLVSAIRKGDISH 65
                 45678999*************************997766655 PP

>> PF04127.10  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.6e-06    0.0074      27      53 ..      33      59 ..      16      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.6e-06
   PF04127.10 27 SSGkmGvalAeaaaerGaeVtlvsgpv 53
                  SG  +  +Aeaa ++Ga+Vtlvs+  
  MMETSP0890-20130614|25216_1 33 TSGGVARNIAEAAGRAGANVTLVSAIR 59
                 599********************9864 PP

>> PF04029.9  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.2e-05      0.14     100     160 ..      16      76 ..      12      79 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.2e-05
    PF04029.9 100 Gtralkrak.eakevligslvNakavaeylrkkaeeevvivcagtegkfslEDvlcAgaiak 160
                  G+ al++   + ++v+++s   a+ +ae++ +   ++v++v a ++g +s  D+ ++ ++ +
  MMETSP0890-20130614|25216_1  16 GVAALDHHHyHDNKVVVTSGGVARNIAEAAGRA-GANVTLVSAIRKGDISHFDCSFCQYVQD 76 
                  8899999888999******************99.9**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.80
# Mc/sec: 242.63
//
Query:       MMETSP0890-20130614|25220_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    4.9   6.3        4.2    4.8   4.4    1.0  1  PF12722.2 High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.4    0.0003       4.2     611     682 ..      18      94 ..       3     112 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0003
    PF12722.2 611 snqkkkk.....eaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeq 682
                  +++++k       + + ++ +++k+ ++ + + +s++++  ++ + +  + +++++++dded++s+e++++  +a++
  MMETSP0890-20130614|25220_1  18 RDKQDKTlkiaeLRLERRKAKEKKDREKMEIDLDSSEQEYATPDQDTSLTSSSQFTPNDDEDESSQEERAEIIQAKS 94 
                  22222224453212222333333334444444444445555555555556666666666666666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1223  (0.0894529); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.44s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 377.03
//
Query:       MMETSP0890-20130614|25227_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 650.44
//
Query:       MMETSP0890-20130614|25232_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.98    9.4   0.0       0.98    9.4   0.0    3.2  4  PF10518.4 TAT (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> PF10518.4  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   7.2e-05      0.98       4      18 ..       9      23 ..       7      25 .. 0.93
   2 ?   -3.6   0.7         1   1.4e+04       4      11 ..      59      66 ..      59      66 .. 0.88
   3 ?   -1.8   0.5       0.3     4e+03      10      14 ..     112     116 ..     107     117 .. 0.44
   4 ?   -0.4   0.1       0.1   1.4e+03      11      22 ..     197     208 ..     194     209 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.2e-05
    PF10518.4  4 RRqfLkggaaaaAaa 18
                 RR++Lkg+++ a+++
  MMETSP0890-20130614|25232_1  9 RRTLLKGSLVSAGLP 23
                 9*********99875 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1
    PF10518.4  4 RRqfLkgg 11
                 RR+  +g+
  MMETSP0890-20130614|25232_1 59 RRRIVRGA 66
                 9*999996 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.3
    PF10518.4  10 ggaaa 14 
                  ++aaa
  MMETSP0890-20130614|25232_1 112 AAAAA 116
                  33333 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.1
    PF10518.4  11 gaaaaAaaalgg 22 
                  +   +Aaaa+g+
  MMETSP0890-20130614|25232_1 197 SISSTAAAADGA 208
                  566789998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.67
# Mc/sec: 1040.81
//
Query:       MMETSP0890-20130614|25248_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.66    9.5   2.9       0.71    9.4   2.0    1.4  1  PF04390.7 Lipopolysaccharide-assembly


Domain annotation for each model (and alignments):
>> PF04390.7  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.0   5.2e-05      0.71     130     155 .]      55      80 .]       8      80 .] 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.2e-05
                  HTTHHHHHHHHHHHHHHHHHHHHHHH CS
    PF04390.7 130 kdaeerdaieeaaedladqivrrlaa 155
                  +  +er+a++ea +++ +++ r+laa
  MMETSP0890-20130614|25248_1  55 TRHAEREAEREAHRQALERVARKLAA 80 
                  5679*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       713  (0.0521504); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.47s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 299.54
//
Query:       MMETSP0890-20130614|25268_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.9   0.0       0.06   13.0   0.0    1.4  1  PF10015.4 Uncharacterized protein conserved in archaea (DUF2258)
      0.077   12.5   0.0       0.16   11.5   0.0    1.5  1  PF05430.6 S-adenosyl-L-methionine-dependent methyltransferase


Domain annotation for each model (and alignments):
>> PF10015.4  Uncharacterized protein conserved in archaea (DUF2258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.7e-06      0.06      22      65 ..     127     169 ..     124     178 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.7e-06
    PF10015.4  22 aalkkkvdkkevvraiselNkklfeklveelkidKldvvrisvd 65 
                  a lkk ++++ +  + + lN +lf ++v   +++K++v +i+v 
  MMETSP0890-20130614|25268_1 127 ADLKKCLEAQAIEIDPTLLNGELFREVV-TAHVPKEAVAKIRVT 169
                  678999**********************.99***********97 PP

>> PF05430.6  S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05      0.16      64     114 ..     141     192 ..     133     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.3e-05
                  -GCCSSHHHHHHHHHHB-----EEES----.-------------EEE----- CS
    PF05430.6  64 nPelwseellkelarllkkkgtlatyssAg.avrrgLkeaGfkvekrkgfgr 114
                  +P+l + el++e+  +  +k  +a     g  vr+gL+++Gf v+++  +gr
  MMETSP0890-20130614|25268_1 141 DPTLLNGELFREVVTAHVPKEAVAKIRVTGhRVRSGLANYGFVVQRSYVLGR 192
                  68999999999999888888777777665516**************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 627.91
//
Query:       MMETSP0890-20130614|25270_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       719  (0.0525892); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.80
# Mc/sec: 563.14
//
Query:       MMETSP0890-20130614|25277_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-05   21.7   0.0    0.00011   21.2   0.0    1.2  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.3e-09   0.00011     180     267 ..     245     323 ..     207     335 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 8.3e-09
   PF03016.10 180 RktllffaGekrragksrsgairdklleeckassdvqceegneskqspenymellkssrFClvppGdtptsrrlfdallagCiPViis 267
                  R+ llf +G        r+ a r + l++++a+   + +  + +k   ++y e+l  ++  ++p+G  +++ r+++a+la +iP+++ 
  MMETSP0890-20130614|25277_1 245 RRELLFCNGY-------RADAQRTQQLQKLNANGF-T-YCAPLPKLRAQQYWERLLAAKTVFCPRGFGVATFRTYEAILAQAIPIFLH 323
                  5555555555.......344556666777755442.2.225778888889************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.93
# Mc/sec: 1012.65
//
Query:       MMETSP0890-20130614|25297_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 243.77
//
Query:       MMETSP0890-20130614|25302_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-11   42.4   0.0    4.9e-11   42.1   0.0    1.1  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.6e-15   4.9e-11      17      56 ..       4      43 ..       1      45 [. 0.89

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 3.6e-15
    PF08373.5 17 lgktklKrriLtalGwkvisipyfeWnelqgkeekldYlk 56
                 +g tk+K r L++lGw +++ipyfeW  l ++     Yl 
  MMETSP0890-20130614|25302_1  4 NGRTKFKSRVLRKLGWTIVHIPYFEWCPLLDERAEDTYLL 43
                 499**************************88888888985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 250.87
//
Query:       MMETSP0890-20130614|25317_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-06   27.5   0.2    4.6e-06   26.5   0.1    1.5  1  PF00847.15 AP2 domain
      0.009   15.4   0.3      0.023   14.1   0.2    1.7  1  PF02809.15 Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> PF00847.15  AP2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   6.7e-10   4.6e-06       1      54 [.      89     141 ..      89     142 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 6.7e-10
   PF00847.15   1 sgykGVrwdkkrgrWvAeirdpse.ngkrkrfslgkfgt.eeAakaaiaarkkleg 54 
                  ++ykGV +   +g+++A +    + +g  + + lg f t  eAa aa++a+++l+g
  MMETSP0890-20130614|25317_1  89 TKYKGVVRSLATGQYRASVSR--KvRG-GAEICLGWFATaLEAAIAADEAARRLHG 141
                  69****99**********333..2444.5*************************98 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   3.4e-06     0.023       4      17 ..      19      32 ..      19      33 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHHHH CS
   PF02809.15  4 EedLqlALalSlee 17
                 E +L++A+alSl+e
  MMETSP0890-20130614|25317_1 19 EKELKQAIALSLQE 32
                 789**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       789  (0.0577092); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.85
# Mc/sec: 569.49
//
Query:       MMETSP0890-20130614|25350_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.0   0.3      0.036   13.7   0.2    1.1  1  PF04513.7 Baculovirus polyhedron envelope protein, PEP, C terminus
      0.065   13.3   0.0       0.07   13.2   0.0    1.2  1  PF03750.8 Protein of unknown function (DUF310)


Domain annotation for each model (and alignments):
>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   5.2e-06     0.036       3      77 ..      10      78 ..       7      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.2e-06
    PF04513.7  3 dvqqLnggggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdaln 77
                 ++ +L g ++ ++ dL+ +L a+    ++i  +++++ d+  + L++ +++l   +a ++++++++++n t + n
  MMETSP0890-20130614|25350_1 10 EIARLRGKTSYETGDLSAALGAL----TSI--AIKEMADKAGNDLDKTQKELDIISARVESQVTNAIQNFTGKEN 78
                 56778888888899999999999....777..8999999999999999999999999999999999999887665 PP

>> PF03750.8  Protein of unknown function (DUF310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05      0.07      52     105 ..       4      58 ..       1      73 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
    PF03750.8  52 deeikkelkllkpkLAyqvGrekealeelkev.ldkaldkvdedlekfkkFvdff 105
                  ++ +++e+ +l+ k  y++G  ++al +l+ + ++++ dk ++dl+k +k  d++
  MMETSP0890-20130614|25350_1   4 EKAVEAEIARLRGKTSYETGDLSAALGALTSIaIKEMADKAGNDLDKTQKELDII 58 
                  455999*************************956889999999999887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.44s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 277.84
//
Query:       MMETSP0890-20130614|25367_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-16   56.9  16.1    0.00025   20.7   0.6    6.2  6  PF00400.27 WD domain, G-beta repeat
    5.2e-05   23.0   0.1    8.5e-05   22.3   0.0    1.4  1  PF08154.7  NLE (NUC135) domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.028   1.9e+02      25      35 ..     120     130 ..     104     130 .. 0.82
   2 !    8.2   0.0    0.0003         2      10      35 ..     136     160 ..     134     162 .. 0.91
   3 ?    0.4   0.0      0.09   6.2e+02       8      29 ..     174     194 ..     168     196 .. 0.82
   4 !   20.7   0.6   3.6e-08   0.00025       9      39 .]     216     244 ..     209     244 .. 0.92
   5 !   13.1   0.0   8.8e-06      0.06      15      39 .]     262     284 ..     252     284 .. 0.92
   6 !   18.0   0.2   2.4e-07    0.0017       8      39 .]     297     329 ..     291     329 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.028
                  EEEEEETTSEE CS
   PF00400.27  25 llasgSrDgti 35 
                   ++ gS+Dgt+
  MMETSP0890-20130614|25367_1 120 KIIIGSYDGTV 130
                  7999******8 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0003
                  SSSSEEEEEEESSSTEEEEEETTSEE CS
   PF00400.27  10 HtspVtcvafspdgpllasgSrDgti 35 
                  H++pV ++++  + +++as+++D  +
  MMETSP0890-20130614|25367_1 136 HNGPVKSLDCQYS-NIIASAGADARV 160
                  99***********.*********776 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.09
                  ESSSSSEEEEEEESSSTEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasg 29 
                   gH+ +++++   p  + ++s+
  MMETSP0890-20130614|25367_1 174 IGHSTTIEALQLGPQ-NTCVSA 194
                  79*******999998.777776 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 3.6e-08
                  SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   H+  V++++ +++   l+s S+D+t++lWd
  MMETSP0890-20130614|25367_1 216 LHSQCVSDLRLDHS--QLFSTSWDHTVKLWD 244
                  5999**********..**************9 PP

  == domain 5    score: 13.1 bits;  conditional E-value: 8.8e-06
                  EEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  15 tcvafspdgpllasgSrDgtirlWd 39 
                  tc++++ +  +la g++Dg ir++d
  MMETSP0890-20130614|25367_1 262 TCLDINNH--ILAAGGHDGIIRIYD 284
                  79999999..*************98 PP

  == domain 6    score: 18.0 bits;  conditional E-value: 2.4e-07
                  ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                   gH s  ++va+ p+ +  l+ +S+D+ +rlWd
  MMETSP0890-20130614|25367_1 297 GGHASCLSAVAWRPSdPYTLLAASHDSALRLWD 329
                  79******************************9 PP

>> PF08154.7  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-08   8.5e-05      12      65 .]      18      72 ..       6      72 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.2e-08
    PF08154.7 12 d....lkvegtpllvPvnltrdgLselvnqLLdeeeepvpFdFlingeelrtsLeeyl 65
                      l+++ + + vP +++++ L++++ +LL     +v +  ++ + ++++sL +++
  MMETSP0890-20130614|25367_1 18 SseetLSIASQVMVVPSSSEKNSLDQILSHLL---QCDVSYMYMVADRLVQGSLGQHV 72
                 23356999************************...567****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.68
# Mc/sec: 1487.15
//
Query:       MMETSP0890-20130614|25386_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-06   25.4   0.0    1.4e-05   24.5   0.0    1.5  1  PF00637.15 Region in Clathrin and VPS
  ------ inclusion threshold ------
      0.047   13.4   0.4      0.065   12.9   0.3    1.2  1  PF09357.5  RteC protein


Domain annotation for each model (and alignments):
>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.1e-09   1.4e-05      91     141 ..       2      52 ..       1      54 [. 0.93

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.1e-09
                  HHH----THHHHSS-.SSTT--TTGGGTTTTT---TTHHHHHHHHHHHH-ST CS
   PF00637.15  91 ilykkinefkkaisl.lkklkdfddaieyakkasdpelwekllealldnkkf 141
                  +++ +++e+++a++l l++l++ ++a++++ + + + lw++l+e+ l+n++f
  MMETSP0890-20130614|25386_1   2 YILGRMGEHRRALNLlLHELGSVKRAVNFVEQYD-SALWDDLIEYALKNERF 52 
                  8999**********88*************98886.99***********9998 PP

>> PF09357.5  RteC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   9.6e-06     0.065       9      96 ..      82     168 ..      76     196 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.6e-06
    PF09357.5   9 eilgrLlyytevykietekpkgslevakkylkkelkklkkkfkk..nldflqYyrsgathldeqYfvrekeelslitdsa.yiekdleFst 96 
                  ++   L++++e y++ +++ + + +vakk   ++l+ l +  ++  +  f    + ++ +ld+ Yf+  k+++ ++++s    ++++ F++
  MMETSP0890-20130614|25386_1  82 KL---LKIFEE-YRFQLKAYQDCATVAKKDTLSSLHHLYALHNRgtICVFPSDWEEKRFELDQSYFIDAKKKIIDSKNSNdESNRKPYFVR 168
                  33...556666.99******************************9999999**********************988877513455555655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.68
# Mc/sec: 729.48
//
Query:       MMETSP0890-20130614|25403_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-16   60.4   0.9    1.3e-07   31.0   0.0    3.3  3  PF07857.7 CEO family (DUF1632)
  ------ inclusion threshold ------
       0.18   11.4   0.1       0.18   11.4   0.0    2.8  3  PF09323.5 Domain of unknown function (DUF1980)
       0.36   10.8  14.4        8.3    6.3   8.0    3.1  3  PF04657.8 Protein of unknown function, DUF606


Domain annotation for each model (and alignments):
>> PF07857.7  CEO family (DUF1632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.8e-11   1.3e-07      94     174 ..       2      84 ..       1     112 [. 0.83
   2 !   23.4   0.0     6e-09   2.7e-05     148     244 ..     273     370 ..     229     374 .. 0.66
   3 !    6.5   0.2   0.00082       3.8      35      82 ..     363     410 ..     363     415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.8e-11
    PF07857.7  94 lvGWavtRfGlFgikaqvpksdlLnylGivlvvvggvlflfikseelepkkkvdrtsleleheeeiedkklvaeessevd...e 174
                   vG+a +RfGl g +++   ++ L   G+ l+v++ v+++f+ +e+++ + + +rts   + + +i++k+   +e+s +d   +
  MMETSP0890-20130614|25403_1   2 CVGYAIGRFGLLGAPKESATNPALRDTGLWLLVISLVFMIFVEPEIVDAEDSLSRTSSAGALDVSINEKNK-ETEKSRMDrllN 84 
                  58*******************************************************99998888888854.455555552441 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 6e-09
    PF07857.7 148 rtsleleheeeiedkklvaeessevd..ekraeknrll.aillaivagvlyGltlvP.viyikdkee.lypgasqegldYvfsfylgifltstvilliYsiv 244
                  ++s++le    + +++   +++s+v   ++ ++k+r++   +  ++ag++ G+ + P v y+k+ ++   + + ++ +++++s  +g+f+ +t+ l i++i+
  MMETSP0890-20130614|25403_1 273 SSSYNLE----EGSNRFHIDKESTVSsrAIDNKKQRFVvGGICGVFAGLFCGTNMLPfVLYLKALPSgQNSITWNQTISFMLSQTFGVFVAATICLAIFTII 370
                  1222222....222222333333332334555666765167999*********9999688***99974566778999**********************997 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00082
    PF07857.7  35 slail.lvglvvaatlgfpkfePlamlgGalyavgnalavpiieriGla 82 
                  +lai+ +++l + +tl+ p ++P   ++G+++++g  la + ++ +G+a
  MMETSP0890-20130614|25403_1 363 CLAIFtIIALTLDITLKSPAVWP-PWISGTIWTAGFLLASIAVSDLGMA 410
                  566654889999***********.589*********************8 PP

>> PF09323.5  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.18      72     146 ..      25      93 ..      14     127 .. 0.64
   2 ?   -0.7   0.4       0.2   9.1e+02     114     165 ..     255     305 ..     234     307 .. 0.63
   3 ?   -1.1   0.7      0.26   1.2e+03      35      56 ..     357     378 ..     346     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.9e-05
    PF09323.5  72 kkllsylllviPliigflvpaatLdssiaakkGisfllaqssksitsedeesseqklkpdtslyyaksayekqme 146
                   + +   llvi+l++ ++v + + d++ +  +  s+        +++++++++++k + d+ l  a  +y++  +
  MMETSP0890-20130614|25403_1  25 LRDTGLWLLVISLVFMIFVEPEIVDAEDSLSRTSSAGA----LDVSINEKNKETEKSRMDRLLNQAALKYQA--R 93 
                  7888899******************8777666666555....455677777777777776333333333322..2 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.2
    PF09323.5 114 ksitsedeesseqklkpdtslyyaksayekqmeklkkkyikqkkikvtdenf 165
                  ++++++++e+ + ++ +  s++y+ ++  + ++ +k++  +++ i  +++ f
  MMETSP0890-20130614|25403_1 255 SNSNQKNNETDRLMTASG-SSSYNLEEGSNRFHIDKESTVSSRAIDNKKQRF 305
                  234455555555555555.888888888888888888888888887666666 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.26
    PF09323.5  35 syiamillfiLalvqltrvfks 56 
                   + a i l+i+++++lt+ ++ 
  MMETSP0890-20130614|25403_1 357 FVAATICLAIFTIIALTLDITL 378
                  5678888888888888887765 PP

>> PF04657.8  Protein of unknown function, DUF606
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.02        89     102     125 ..       1      24 [.       1      39 [. 0.72
   2 ?   -0.1   0.0      0.17   7.9e+02      56      77 ..     294     315 ..     286     325 .. 0.80
   3 ?    6.3   8.0    0.0018       8.3      31     111 ..     350     430 ..     336     461 .] 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.02
    PF04657.8 102 llaslliDhfGlfglekrplsltr 125
                  ++++ +i +fGl+g++k++ +   
  MMETSP0890-20130614|25403_1   1 MCVGYAIGRFGLLGAPKESATNPA 24 
                  78999************9987554 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.17
    PF04657.8  56 klaalksapwwallGGllGavf 77 
                  + +a+++ +  +++GG++G++ 
  MMETSP0890-20130614|25403_1 294 SSRAIDNKKQRFVVGGICGVFA 315
                  56778888888999*****985 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0018
    PF04657.8  31 llAslvsflvGtivllllllltrkpklaalksapwwallGGllGavfvtlaillvpklGaaltvvlvlaGqllaslliDhf 111
                  l  ++ +f+ +ti+l++++++  + +++  + a w  ++ G +  +  +la ++v+ lG+a + +   +G ++ s++i  f
  MMETSP0890-20130614|25403_1 350 LSQTFGVFVAATICLAIFTIIALTLDITLKSPAVWPPWISGTIWTAGFLLASIAVSDLGMAEAYTYDAIGPVMLSAIISFF 430
                  445677888899999999999888899999999******999999999999**************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       824  (0.0602692); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.90
# Mc/sec: 1227.47
//
Query:       MMETSP0890-20130614|25419_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-17   63.9   0.0    3.2e-07   30.6   0.0    2.6  2  PF00581.15 Rhodanese-like domain


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.4e-11   3.3e-07      22     112 ..      19     110 ..      16     111 .. 0.73
   2 !   30.6   0.0   2.3e-11   3.2e-07      11     112 ..     155     280 ..     144     281 .. 0.73

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2.4e-11
   PF00581.15  22 peeyekghIpgAvnvpldsl.....ypkrdlpfkdklaeeleesgkkldkkktvvvycssgnrsggaaalllalilkelgyknvyvLdGGfeawka 112
                  ++++e+ +IpgA+  +ld+      +p ++   ++ ++     s  +l +  +vv+y++ g  s+   ++    +lk +g++nv vL+GG+ aw a
  MMETSP0890-20130614|25419_1  19 KQKFEEARIPGARFWDLDEWseaeaAPLTPHNLPSVTQFAKVASICGLTPQSRVVCYDQFGIFSSPRLWF----TLKFFGFTNVAVLNGGLPAWEA 110
                  578999******87777666767774444444444444445555556799999*****766666665555....8999****************87 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 2.3e-11
   PF00581.15  11 kekvvllDvRspeey..........ekghIpgAvnvpldsl................ypkrdlpfkdklaeeleesgkkldkkk...tvvvycssgnrsggaaalllalilkelgyknvyvLdGGfeawka 112
                  + + +llD+Rs++++          ++gh+pg++++p+ +l                   ++ ++++ l + +  + ++ + +     + + c     ++g++a+  al l+++g  +  ++dG+++++ a
  MMETSP0890-20130614|25419_1 155 GVQTLLLDARSKSRFhgsvpdprglRTGHVPGSLSLPFTDLlqpaselahpshgggpFRGATFYSDKTLLDIITLACQRNPTDLsstDIALTC-----GSGLTAATIALALYRIGCSRLAIYDGSWTEYGA 280
                  56789*********9777776666677***********999********99999987555555555555555444444444433333578999.....444444445666*****************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:01.18
# Mc/sec: 605.18
//
Query:       MMETSP0890-20130614|25416_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-09   36.9   1.0    2.9e-08   33.2   0.7    2.2  1  PF04278.7 Tic22-like family


Domain annotation for each model (and alignments):
>> PF04278.7  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.7   2.2e-12   2.9e-08      68     269 ..      66     314 ..      12     317 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.2e-12
    PF04278.7  68 devaekLagvPVFtianskgepllvsgkreg...gksvgllfisqedAeallkelkkqnp..................................elkkgakvvpislgqvyklaqeeqkkseklaFrfvPdpkqvknAlellkkegqnvkkFrGVPvFqsrs..ltvkkdnkqyiPlFFskeDLerel....erakrqqpelaksvk...........IeVisLedvlkkmeesddseldkiifiPpgkslefvqe 269
                  ++  e L  vPVF++++ +g p+l+ ++++    +  + l fi+ + A+a  +++ +                                     e++  ++++  + g v  + + e++++  +   f  +    + A+ l  + g ++     VP+F   +   t++ ++k + P F+s  DL r+     + a+++q el  + +             V++L+++l++ +++     + i ++Pp  s++ +++
  MMETSP0890-20130614|25416_1  66 NATSELLSVVPVFALTDDSGRPVLMQTNDTNseeQLPMQLWFIEVNVARAHAAHISEISGssvqlklamsnldsvrenaklikdrqvricadprEVHVARQLLLRAAGFV-SINSTEAENAGSVVIDFTNETIVTNEAKRLQSAIGVDF--DTDVPLFTLAAlnATIQGEQKTVQPWFLSFADLVRAYvnstSPANADQDELQRHAQaaldvilqvgtTSVTTLDKLLSAVQNG----NEHIFIMPPASSVQALTQ 314
                  66678899******************999987433345678888898988877777666667789999999999999999999999999999884444444444444433.44466888999999999999999999****55555543..347*****9996779***************77766541111334444555544444666666555577899999999999988....6789999**999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.83
# Mc/sec: 1050.93
//
Query:       MMETSP0890-20130614|25434_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       641  (0.0468841); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.60
# Mc/sec: 2500.20
//
Query:       MMETSP0890-20130614|25447_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 306.00
//
Query:       MMETSP0890-20130614|25452_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-51  171.9   0.1    1.6e-50  171.1   0.1    1.4  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    4.5e-27   94.1   0.3    1.1e-20   73.6   0.0    3.3  4  PF00725.17 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
     0.0039   16.0   0.6     0.0062   15.3   0.4    1.3  1  PF01266.19 FAD dependent oxidoreductase
     0.0098   14.9   0.0      0.022   13.7   0.0    1.6  1  PF00378.15 Enoyl-CoA hydratase/isomerase family
  ------ inclusion threshold ------
      0.015   15.0   2.5       0.21   11.3   1.7    2.3  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
      0.017   14.7   0.0      0.049   13.2   0.0    1.8  1  PF01210.18 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
      0.023   13.7   0.2      0.044   12.8   0.1    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.083   13.1   0.1       0.19   12.0   0.1    1.6  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
        0.1   10.8   0.0       0.15   10.2   0.0    1.2  1  PF04006.7  Mpp10 protein
       0.12   11.6   2.9       0.13   11.5   0.8    2.1  2  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain


Domain annotation for each model (and alignments):
>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.1   1.2e-53   1.6e-50       1     180 []     152     337 ..     152     337 .. 0.95

  Alignments for each domain:
  == domain 1    score: 171.1 bits;  conditional E-value: 1.2e-53
                  EEEEE---------HHHHHCT.SEEEEE-S-HHHHHHHHHHSHHHHHTTCH.....HHHHHHHHHCEE.....EESSGCCGG.G-SEEEE-S-SSHHHHHHHHHHHHCCS.TTSEEEE--SSS-HHHHCTTSSSGGGEE--EE-SSTTT--EEEEEE-TT--HHHHHHHHHHCCC---EEEEEES- CS
   PF02737.13   1 kvaVvGaGtmGagiAavfaragleVvlvdiseealekalerieksleklvekgklkeeeveevlaris.....vttdleeav.dadlviEavvEnlelKrelfaelekvakpeailasnTSslsitelaealkrpervvglHffnPvhlmklVEvvrgekTseetvatvvellkklgktpvvvkdv 180
                  +v V+GaG+mGagiA+v a++g++Vvl d++++ ++k+ + i ++l+k+v+k++l+  e++ ++ar++     + + +e+ v ++ +viEav+Enl+lK+++++++ek++++++i+a+nTS+l+it++a++lk+++rv+g+H+f+Pv+ m+l+E++++++T +++++ ++++  + gkt++ vkdv
  MMETSP0890-20130614|25452_1 152 NVCVLGAGLMGAGIAQVSAERGMNVVLKDRDAKGVAKGIKYIGDNLDKKVKKRRLSVYERNLTIARVQgydenMLSGYERKVkNTHVVIEAVFENLQLKHDVLSQVEKLVSNNCIIATNTSALPITNVAQGLKKKDRVLGMHYFSPVPQMQLLEIIPHAETCDDALRIAFQVGIDQGKTCILVKDV 337
                  599****************************************************************9544444455777777****************************************************************************************************996 PP

>> PF00725.17  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.2   5.8e+03      69      97 .]      37      65 ..      20      65 .. 0.71
   2 ?   -3.4   0.0       8.9   1.2e+04      28      47 ..      73      92 ..      70     112 .. 0.58
   3 !   73.6   0.0   8.4e-24   1.1e-20       1      97 []     339     436 ..     339     436 .. 0.90
   4 !   17.0   0.0   3.8e-06    0.0052       5      77 ..     473     548 ..     471     550 .] 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.2
                 HGG-..HHHHHHHHTT-----------EC CS
   PF00725.17 69 rayapsplleklveagrlgrktgkgfyky 97
                 ++ + s+ ++++++ +r+ +++ + f +y
  MMETSP0890-20130614|25452_1 37 NKLRRSQSMKQYFNIKRFATEKIQYFRNY 65
                 35666889999999999999888887766 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 8.9
                 HHHHHHHH.-------HHHH CS
   PF00725.17 28 diDaamkkglGlpmGpfels 47
                 ++D+ ++ ++  p++++  +
  MMETSP0890-20130614|25452_1 73 QVDKNTRGKYAAPYAIIDCI 92
                 66666666666666555443 PP

  == domain 3    score: 73.6 bits;  conditional E-value: 8.4e-24
                  ---HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH.-------HHHHHH---HHHHHHHH..HHHCTCCCH.GG-..HHHHHHHHTT-----------EC CS
   PF00725.17   1 GFvvnRvlapllneairlveegvatpediDaamkkglGlpmGpfelsdlvgldvakkile..vlaeelger.ayapsplleklveagrlgrktgkgfyky 97 
                  GF+vnR lap + e+  l+++g ++p+++Daa+ + lG+p+Gp++l+d+vg dva ++ +  +   + ++r + a++ +l+k+v++g lgrk+gkgf+ y
  MMETSP0890-20130614|25452_1 339 GFYVNRALAPQMAEIGPLFADG-VDPAKLDAAILD-LGMPVGPITLLDEVGADVALHVQNtmIADPTMENRmDGADPTMLQKIVDNGWLGRKSGKGFFLY 436
                  9*********************.************.************************633333344448888899*******************866 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 3.8e-06
                  HHHHHHHHHHHHHHHHTTSS.-HHHHHHHHHH.---.-..---HHHHHH---HHHHHHHHHHHCTCCCHGG-..HHH CS
   PF00725.17   5 nRvlapllneairlveegva.tpediDaamkkglGl.p..mGpfelsdlvgldvakkilevlaeelgerayapspll 77 
                  +R la+++nea+ +++eg++ +p+d D a+  g+G+ p   Gpf+++d  g     + ++ la+++g r + p++ll
  MMETSP0890-20130614|25452_1 473 DRYLARFVNEAAVCLQEGIIdSPQDADLAAVFGVGFlPftGGPFRMLDARGTASYVDRMHFLADTYGSR-FSPCQLL 548
                  799***************98469************743548******************9999999988.6667765 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   4.5e-06    0.0062       2      31 ..     153     182 ..     152     189 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.5e-06
                  EEEE----HHHHHHHHHHHTT-EEEEEESS CS
   PF01266.19   2 vviiGgGivGlstAyeLarrglkVtllekg 31 
                  v++ G+G +G+++A   a+rg++V+l +++
  MMETSP0890-20130614|25452_1 153 VCVLGAGLMGAGIAQVSAERGMNVVLKDRD 182
                  99************************9987 PP

>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.6e-05     0.022     164     236 ..       2      92 ..       1      95 [. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-05
                  HHHHHTTSSSEEE-GCC---HHHHHHHHHH--..................S--SS-HHHHHHH..HHHH------------HCHHHHHHHH CS
   PF00378.15 164 deAlkvGlvdkvvpeeelveeaielakrladk..................pklalallkkamraalekalsevrkqelklypallakedvk 236
                  d+A+++Glvd+++    l++ ai+ a+ l ++                  ++ a + ++ + +  l++a+++v k ++ +y a++a +d++
  MMETSP0890-20130614|25452_1   2 DKAKRLGLVDQICDLPALEAVAIAKAEALTKSgalnklrrsqsmkqyfniKRFATEKIQYFRNYILNEAKKQVDKNTRGKYAAPYAIIDCI 92 
                  78*****************************99***9999999999988877777777776666689999999999999999999999986 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.7   0.00015      0.21       2      42 ..     151     191 ..     150     292 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
                  BEBEEB-------HHHHHHHH---EEEE--SSHHHHHHHHH CS
   PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtkekveelva 42 
                   ++ ++G G MG+ +a+  +++g++v+  +r+++ v++ ++
  MMETSP0890-20130614|25452_1 151 HNVCVLGAGLMGAGIAQVSAERGMNVVLKDRDAKGVAKGIK 191
                  6899***************************9988877655 PP

>> PF01210.18  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.049       1      33 [.     152     184 ..     152     217 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.6e-05
                  EEEEE-------HHHHHHHTTEEEEEEE-S-HH CS
   PF01210.18   1 kvavlGaGswGtalAkvlaenghevrlWvreek 33 
                  +v+vlGaG +G  +A+v ae+g +v+l +r++k
  MMETSP0890-20130614|25452_1 152 NVCVLGAGLMGAGIAQVSAERGMNVVLKDRDAK 184
                  59*************************999985 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.2e-05     0.044      18      70 ..     135     184 ..     124     204 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.2e-05
                  CCTT--.--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS-- CS
   PF02826.14  18 vregewssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskk 70 
                  ++++++   ++ +++e ++ +v+++G+G +G  +a++ ++ gm+v+  dr  k
  MMETSP0890-20130614|25452_1 135 TKKNRF---ASSTQTEKKQHNVCVLGAGLMGAGIAQVSAERGMNVVLKDRDAK 184
                  455555...6677889999****************************999876 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.19       2      41 ..     153     188 ..     152     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00014
   PF03807.12   2 igiiGaGnigealakglaaagaqkheviiaasrspekaee 41 
                  ++++GaG +g+++a+  a++g    +v+   +r+++ +++
  MMETSP0890-20130614|25452_1 153 VCVLGAGLMGAGIAQVSAERG---MNVV-LKDRDAKGVAK 188
                  799******************...9999.55999988776 PP

>> PF04006.7  Mpp10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.15     434     511 ..     202     280 ..     192     283 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00011
    PF04006.7 434 skksLaeiYEaeYlkkenekt.....sakaekenkeheeikklmksLflkLDaLssfhfvPkpaeeevkivsnvpaiamEeva 511
                   k+ L+ +YE + + +  +       s  + k ++ h  i++++++L lk D+Ls+++   k ++++  i +n++a+ + +va
  MMETSP0890-20130614|25452_1 202 KKRRLS-VYERNLTIARVQGYdenmlSGYERKVKNTHVVIEAVFENLQLKHDVLSQVE---KLVSNNCIIATNTSALPITNVA 280
                  444443.788877665554444455788899999**********************98...9999999********9988886 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   9.3e-05      0.13       1      38 [.     151     188 ..     151     280 .. 0.85
   2 ?   -2.7   0.0         2   2.8e+03      80     104 ..     397     421 ..     391     422 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.3e-05
                  -EEEEE------------TTT---EEE---S-HHHHHH CS
    PF03721.9   1 mkiaviGlGYvGlptavvlaekghevvgvDineekvdk 38 
                  ++++v+G+G  G+  a v ae+g++vv+ D + + v+k
  MMETSP0890-20130614|25452_1 151 HNVCVLGAGLMGAGIAQVSAERGMNVVLKDRDAKGVAK 188
                  58******************************998875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2
                  EEE-----B----B.----HHHHHH CS
    PF03721.9  80 ifiavgTpskkgkaaDlkyvesaae 104
                  ++ia++T  ++ + aD +++++ ++
  MMETSP0890-20130614|25452_1 397 TMIADPTMENRMDGADPTMLQKIVD 421
                  799******9977779999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.95u 0.37s 00:00:01.31 Elapsed: 00:00:00.95
# Mc/sec: 1387.36
//
Query:       MMETSP0890-20130614|25462_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   33.8   2.0    4.5e-08   32.6   1.4    1.6  1  PF01585.18 G-patch domain
      2e-06   27.4   0.8      2e-06   27.4   0.6    2.6  2  PF12656.2  DExH-box splicing factor binding site
  ------ inclusion threshold ------
       0.58    9.8   5.9       0.62    9.7   4.1    1.1  1  PF06459.7  Ryanodine Receptor TM 4-6
        1.9    7.6   8.6          3    7.0   6.0    1.2  1  PF06371.8  Diaphanous GTPase-binding Domain


Domain annotation for each model (and alignments):
>> PF01585.18  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   1.4   1.3e-11   4.5e-08      10      44 ..       2      36 ..       2      37 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.3e-11
   PF01585.18 10 akmGWkpGqGLGkneqGivePieakikkdrkGlGa 44
                 a mGWk+G+ LGk++qG    ++++ ++++ GlG 
  MMETSP0890-20130614|25462_1  2 AAMGWKKGESLGKHQQGVNSYVKVQKRQEGLGLGL 36
                 57*******************************95 PP

>> PF12656.2  DExH-box splicing factor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.6   5.9e-10     2e-06      40      78 ..       3      41 ..       2      42 .. 0.94
   2 ?    0.0   1.8       0.2   6.8e+02       3      20 ..     133     150 ..     123     159 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.9e-10
    PF12656.2 40 GmGWkegqgigkkkkgsvkpeepkrRpkglGLGakpaek 78
                  mGWk+g+  gk ++g    +++++R++glGLG +++e+
  MMETSP0890-20130614|25462_1  3 AMGWKKGESLGKHQQGVNSYVKVQKRQEGLGLGLDRSEQ 41
                 6********************************999875 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.2
    PF12656.2   3 eseeekfkkdlaslpeea 20 
                  ++ee+k+kk+ +s+p+e+
  MMETSP0890-20130614|25462_1 133 KKEEKKKKKKRSSSPNED 150
                  455566666666666554 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.1   0.00018      0.62      45     148 ..      65     169 ..      26     175 .] 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00018
    PF06459.7  45 sdafgldvkkeggk.rhdaepgLgdvsevepeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekkkekkaekeeaae 148
                  sdaf   + k +g+ +   +++L+d+ + +       +    +  +l  +e+++ s ++k+d+ ++ k+++++++++++ +++++    + k+ +kk +k+ + +
  MMETSP0890-20130614|25462_1  65 SDAFSAALAKANGGeKNPDSGSLDDIYKATGGARLGMRARLYQGAKLRRTEQSEMSLSKKNDEISSTKKKEEKKKKKKRSSSPNEDRSGSSKEVVKKRKKSSSSK 169
                  677777776666665888899999999999888888777777777677666666666677776666664444444444444444444444444444444444433 PP

>> PF06371.8  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.0   0.00087         3      27      86 ..     113     172 ..     102     174 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00087
    PF06371.8  27 reqmlalpiekKwqlvvqdkkteaqkeeklskskseseeeespesyvkklkddslseklL 86 
                  r +  +++ +kK   +++ kk+e++k++k+ +s+ ++++++s+++ vkk+k+ s+s++++
  MMETSP0890-20130614|25462_1 113 RTEQSEMSLSKKNDEISSTKKKEEKKKKKKRSSSPNEDRSGSSKEVVKKRKKSSSSKNTI 172
                  667778999***************99999999999******************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1508  (0.110298); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 676.39
//
Query:       MMETSP0890-20130614|25459_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.6   0.1        4.7    7.2   0.0    2.4  2  PF07571.8 Protein of unknown function (DUF1546)


Domain annotation for each model (and alignments):
>> PF07571.8  Protein of unknown function (DUF1546)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0074     1e+02      18      40 ..      57      79 ..      26      93 .. 0.81
   2 ?    7.2   0.0   0.00035       4.7      44      65 ..     229     250 ..     197     267 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0074
    PF07571.8 18 ehwalRdfAAslLskiakkysks 40
                  + a+R++A+s Ls+i ++ + +
  MMETSP0890-20130614|25459_1 57 ATGAIRKRASSELSQIGQTATMA 79
                 4569************9887655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00035
    PF07571.8  44 lkprltrtllkalldpkkplgt 65 
                  +  r+t+ l  alldpkkp  t
  MMETSP0890-20130614|25459_1 229 ISKRVTSRLSDALLDPKKPRPT 250
                  678***************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.64
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|25466_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-16   58.7   0.4    9.2e-16   57.9   0.3    1.5  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.3   6.7e-20   9.2e-16      22     145 ..     103     275 ..      76     381 .. 0.63

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 6.7e-20
                  HHHHHHTT---TTTTGGGSTTGGG-----.--HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH-----.--EE----------.......-...........-..........HHHHHHHHH----HHHHHHH-...................................- CS
   PF00141.18  22 lafhdcfvygGcdgsvlllapektapaNa.slrkgldvldaikakleaacpgtvScADlialaardavelaggplvpvslGRrDatessa.sev.snl...........P....dpkasadelrdkfarkgltdeelvaLs...................................G 145
                  l f  ++  gG d+sv    + +  ++N  +lr++l vl + +++l +  ++ +++ADliala++ av + ggp + v+lGR+Da + ++ +++ +             P    +++ +a+ +++ f++ g+t++e   L+                                    
  MMETSP0890-20130614|25466_1 103 LSFDEKTGRGGPDASVAA--SIQLPGKNYaELREALSVLTESQKALRR--TNALTLADLIALAGAEAVAAVGGPEISVQLGRTDAEDLNEkIKAvRTNglegakkfqcvPaidlAQDPTANSILSAFRKSGFTEREAASLLgtlaildnaadlaiavedrkddgraqskergkmgrT 275
                  4554444439*****966..7788888888****************99..467*********************77***********99987775444788888888884666655568999******************8234444444444444444444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:00.85
# Mc/sec: 1186.90
//
Query:       MMETSP0890-20130614|25489_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.9  18.2      0.093   11.6  11.4    1.5  1  PF11702.3 Protein of unknown function (DUF3295)


Domain annotation for each model (and alignments):
>> PF11702.3  Protein of unknown function (DUF3295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  11.4   6.8e-06     0.093     177     307 ..     124     266 ..     110     268 .] 0.52

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.8e-06
    PF11702.3 177 nkspsptisestaaaqakleleKkkqakftlggssgeddessfedrl..svqdekrssl...kk.kkkkfqlggsdeeeksa.ssslspkkktasfkeevvtktikertvddde.daieteed..iv..dEsaIddddddsdW 307
                  +k+ + +++ s++++q+  +  K++     l  ++++dd+  f++     ++ ++rs+    ++ k+    +  s+++++ + ss + +kk   s k+  +  +i e   ddde d+ie e+d  ++  d+  Idddddd+dW
  MMETSP0890-20130614|25489_1 124 KKKGKRSTTVSKESKQKESSSGKRRRLLDDLPIDDDDDDILPFDPIPlpPSRRPRRSTTckvRTyKEDDDDVSRSNDDDEEPpSSVTVTKKSNLSSKRRTTPTDIIEIDDDDDEnDEIELEYDadDInkDDESIDDDDDDEDW 266
                  2222223344455555555555555555555555555555566554377333444433321133466667788555555555055545555556666666666777766666551344444331133236789********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       792  (0.0579286); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:01.02
# Mc/sec: 629.63
//
Query:       MMETSP0890-20130614|25508_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.18   11.2   0.0    1.4  1  PF11789.3 Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.3e-05      0.18      18      36 ..      18      36 ..       7      42 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
                 -SB-SSEEEES----EEEH CS
    PF11789.3 18 lkpfkePvtskkCnHvFEk 36
                 ++ f +P+   +CnHvF  
  MMETSP0890-20130614|25508_1 18 RQWFVKPLNMVQCNHVFKS 36
                 788**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.97
# Mc/sec: 212.46
//
Query:       MMETSP0890-20130614|25502_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-25   87.7   0.2    8.1e-25   86.8   0.2    1.5  1  PF03463.10 eRF1 domain 1
    3.9e-12   46.3   0.0    8.6e-12   45.2   0.0    1.6  1  PF03465.10 eRF1 domain 3


Domain annotation for each model (and alignments):
>> PF03463.10  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.2   1.2e-28   8.1e-25      21     125 ..       2     103 ..       1     109 [. 0.94

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 1.2e-28
                  -SHHHHHHHHHHS-TT-EEEEEEEEE-------------EEEEEEEEEEECEEEECTTSSEEEEE-EEEC--TT.----EEEEEE-TTSEEEEESS---HHHHHH CS
   PF03463.10  21 eesddlwhlynLiepgDrviadtvrkvqeasnikgsktservklaLtieveklkfdpengllrvsGkvveeneevkigayhtldlepnrpltitkenwdsvaler 125
                  e+ dd+w +yn+   +D v a t rk+   +++ +s  se+++++Lt++ +k+++d  +g++r+sG++v ene vk+ga+ht ++     +t+tk  wd+ +   
  MMETSP0890-20130614|25502_1   2 EDADDVWTIYNIMDVDDFVKASTYRKI---ESSGSSGGSEKRRVTLTLRATKIEYDGLSGSVRISGTNVCENEWVKMGAHHTTEIATRSTITLTKASWDAGHRAS 103
                  899************************...37899999*************************************************************987655 PP

>> PF03465.10  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.3e-15   8.6e-12       3     112 ..     253     351 ..     251     352 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.3e-15
                  HHHHHHHHHHHHHHTTCSSEE---.HHHHHHHHTT-EEEEEEEHHHHTSSSH.HHHHS.---.HHHHHH.HHHHHHHHHHTT-EEEEE-TTSTTHHHH.HHG---EEEESS- CS
   PF03465.10   3 qekklleefleelakdtgkavYGv.eevlkalemgAvetLLvseelersrdt.lkekvketgeelelvelieelvenveesgakveiisseseeGeqlvkafgGiaaiLRyk 112
                  +  ++leef     kd  ++vYG     ++a+   A++tLLv+++  +s  + ++++            ++ +l++++++s ++v +++ ++ ++++l + +gGiaaiLR++
  MMETSP0890-20130614|25502_1 253 EHYEALEEFRAAELKDATRVVYGSlAAAQEAADRAAISTLLVLDDKLKSAHDiAQRR------------ALTHLIDTASSSAGQVLVFPARHVAAQRL-ALLGGIAAILRFP 351
                  567899999998889********735678999************9998876634333............699**************************.************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:00.81
# Mc/sec: 1387.52
//
Query:       MMETSP0890-20130614|25510_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-16   57.7   0.0    1.4e-15   56.7   0.0    1.5  1  PF04564.10 U-box domain
    4.7e-05   22.7   0.0    0.00012   21.4   0.0    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
     0.0002   20.6   0.0    0.00068   18.9   0.0    1.9  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.019   14.0   0.0    1.2  1  PF11288.3  Protein of unknown function (DUF3089)
      0.073   12.9   1.1        0.1   12.4   0.0    1.7  2  PF13462.1  Thioredoxin
      0.088   12.9   0.0        5.4    7.1   0.0    2.3  2  PF03544.9  Gram-negative bacterial tonB protein


Domain annotation for each model (and alignments):
>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   6.3e-19   1.4e-15       1      70 [.     284     356 ..     284     359 .. 0.90

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 6.3e-19
                  --GGGB-TTT-SB-SSEEE-..TTT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHH CS
   PF04564.10   1 vPdefldpitlelmkdPvil..PsgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkflee 70 
                  +P  fl+pitl l++dPv+l   sg++++r+++e+hl+     dP+t   + ++ + +pn++lK++Id++l  
  MMETSP0890-20130614|25510_1 284 IPSSFLCPITLSLLRDPVVLvtGSGHSFERAALEAHLRFFPYRDPITnIDHPSKLKFTPNRALKAAIDEWLTR 356
                  89****************9822566**********************77888899***************986 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.3e-08   0.00012       3      43 ..     280     319 ..     278     331 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.3e-08
                  XXXXXXXX-B-TTT-S.-SS....EEEES..---EEEHHHHHHH CS
    PF13445.1   3 naahfhsifaCpiske.qsteqnpPvvLp..CGhvisrealekl 43 
                  n++++ s+f Cpi+   + +    PvvL    Gh ++r ale  
  MMETSP0890-20130614|25510_1 280 NDNQIPSSFLCPITLSlLRD----PVVLVtgSGHSFERAALEAH 319
                  67899***********9988....**977699*********965 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     3e-07   0.00068      11      43 ..     287     320 ..     281     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3e-07
                  X-B-TTT-SB-SSEEEES--.--EEEHHHHHHHH CS
    PF11789.3  11 slkCpltlkpfkePvtskkC.nHvFEkeaIlkml 43 
                  s  Cp+tl+ +++Pv   +   H+FE+ a++++l
  MMETSP0890-20130614|25510_1 287 SFLCPITLSLLRDPVVLVTGsGHSFERAALEAHL 320
                  567***********9876555*********9998 PP

>> PF11288.3  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.3e-06     0.019      57     126 ..      33     102 ..      30     130 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.3e-06
    PF11288.3  57 tlaafletdkeeaekalelaysDVkrAFaaylaeenegrpii.LaGhsQGsllllrLlreeiagkplqkrl 126
                  t aaf+ +++e+ + ++e a   +++A+++yl+ +n ++  + L+  sQ  +   r l+++ia ++l++  
  MMETSP0890-20130614|25510_1  33 TSAAFT-KNEENFNIEIERAALNIATAWRKYLQLQNTKKSAVyLVRESQCHASRKRDLQKRIACEQLRSGA 102
                  677888.888889999*****************99988765449******************999988755 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.1   4.8e+03      63      99 ..      53      89 ..      33     105 .. 0.47
   2 ?   12.4   0.0   4.5e-05       0.1      12      52 ..     199     237 ..     198     253 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.1
    PF13462.1 63 lkaamaarcageqseffllikallysqqeewaeseel 99
                 l+ a a r + + ++  + +  l+++ q +++++++l
  MMETSP0890-20130614|25510_1 53 LNIATAWRKYLQLQNTKKSAVYLVRESQCHASRKRDL 89
                 3333333333333322233333344444444444333 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.5e-05
    PF13462.1  12 dApvtvieyadltCphCarfheevekllekyidtgkvkfiy 52 
                  +Ap  v + +d +C +Ca+f+++++kll++   +g   f++
  MMETSP0890-20130614|25510_1 199 AAPLIVQLMFDRKCISCAEFYTQIRKLLREL--EGENAFTF 237
                  59999***********************998..77766665 PP

>> PF03544.9  Gram-negative bacterial tonB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.04        92      44      70 ..      48      74 ..      41      78 .. 0.85
   2 ?    7.1   0.0    0.0024       5.4      34      67 ..     302     336 ..     299     343 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.04
                 HHHHHHHHCTT-EE--------..... CS
    PF03544.9 44 LdkaAleavrkwrfppapkngkpvevk 70
                 +++aAl+++ +wr   +++n+k+ +v 
  MMETSP0890-20130614|25510_1 48 IERAALNIATAWRKYLQLQNTKKSAVY 74
                 689****************98766664 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0024
                  EEEE-SSCHHHHHHHHHHCTT.-EE------.--.. CS
    PF03544.9  34 kvlkssgheiLdkaAleavrk.wrfppapkn.gkpv 67 
                   ++ +sgh+ +++aAlea  + +++  +  n   p 
  MMETSP0890-20130614|25510_1 302 VLVTGSGHS-FERAALEAHLRfFPYRDPITNiDHPS 336
                  57899**99.********999888888777755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:01.10
# Mc/sec: 795.15
//
Query:       MMETSP0890-20130614|25521_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.5   0.7     0.0021   17.9   0.5    1.3  1  PF14015.1  Protein of unknown function (DUF4231)
  ------ inclusion threshold ------
      0.011   14.8   0.1      0.014   14.4   0.1    1.1  1  PF02673.13 Bacitracin resistance protein BacA


Domain annotation for each model (and alignments):
>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.5     3e-07    0.0021       4      77 ..     106     173 ..     103     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3e-07
    PF14015.1   4 idwydkkaerarrrynllriitiilgvlaavvpilvslnslgagsnwlkwvtv.ilsalvailaslatffklker 77 
                   d+++++  ++r+r+ +l+++ ++++++ ++v++             lk vt+  l+a+++il++  +  k+ +r
  MMETSP0890-20130614|25521_1 106 RDRFRRAYFQNRNRWFILTFLLLCATAAIGIVSV-------VFHDGFLKNVTTaSLAAAATILTGTIAALKYDSR 173
                  578999999***************5555444444.......3344556666666999*******99999988876 PP

>> PF02673.13  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   2.1e-06     0.014      58     131 ..      93     172 ..      73     190 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.1e-06
   PF02673.13  58 kdilkllkgllrsla.......kakkeearlllliivatipagvvGlllkdvikellfrslvlvaialivgGlllllaekl 131
                  +++l+++ +++r+         +++++ + l++l++ at  +g+v ++++d + + ++ +  l a+a+i++G +  l    
  MMETSP0890-20130614|25521_1  93 QKVLAMTMSVVRKRDrfrrayfQNRNRWFILTFLLLCATAAIGIVSVVFHDGFLKNVT-TASLAAAATILTGTIAALKYDS 172
                  55555555555554456666668899999999*******************9988884.7888899999999876655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       752  (0.0550029); expected 273.4 (0.02)
Passed bias filter:                      599  (0.0438122); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.43s 00:00:01.01 Elapsed: 00:00:00.95
# Mc/sec: 628.10
//
Query:       MMETSP0890-20130614|25536_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.8   0.2       0.17   11.9   0.1    1.5  1  PF13380.1 CoA binding domain


Domain annotation for each model (and alignments):
>> PF13380.1  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.2e-05      0.17      44     100 ..      38      98 ..      12     111 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
    PF13380.1  44 kvyaslae.dl...pvdlvsvftppervpavveealal..gakavwfqpgseneeaaeaaeea 100
                  ++ a+lae +    + d + + t  +r+ ++v+ a ++  ++k+ wfq++ e +e+ ++a+e+
  MMETSP0890-20130614|25536_1  38 TCIAELAEkEVldrATDNAQLET--DRAYNLVAHADEIhsRPKRTWFQSSRERDEIKSRAKEQ 98 
                  56666665321333444444444..3444444444444225*******************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1170  (0.0855764); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.48s 00:00:01.01 Elapsed: 00:00:00.82
# Mc/sec: 850.41
//
Query:       MMETSP0890-20130614|25550_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        96  (0.00702165); expected 273.4 (0.02)
Passed bias filter:                       90  (0.0065828); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 193.14
//
Query:       MMETSP0890-20130614|25562_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-22   77.0   7.5    1.5e-21   76.1   5.2    1.5  1  PF08240.7  Alcohol dehydrogenase GroES-like domain
    2.6e-15   56.0   0.0    4.1e-15   55.3   0.0    1.3  1  PF00107.21 Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.049   12.6   0.0      0.083   11.9   0.0    1.3  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   5.2   3.2e-25   1.5e-21       1     105 [.      29     142 ..      29     147 .. 0.91

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 3.2e-25
                  TTEEEEEEEEB---HHHHHHH--.......TTTT--SSEE----BE-EEEEE----B-.-----EEEE--EEE.-SSSHHHHTT-GGG-STBEE---B.-----BSEEEECGGG CS
    PF08240.7   1 pgevlvkvkaaGiCgsDlhivkge......kelevklplilGhEivGiveevgegvkk.lkvGdrvvveplis.cgeCeaCkegeenlceeakllgvk.ldGgfaeyvvvpekk 105
                  p+ v ++v+++G+CgsD+h++k +      + + v   +++GhE+ Giv +vg+  ++ lk+Gd v v +++s c++Ce C++g+e+lc++ k +  +   Ggfa+y+ v++++
  MMETSP0890-20130614|25562_1  29 PNGVEIQVSYCGVCGSDIHLLKSDggysdfTAYAVGKKQVCGHEVLGIVTNVGRANNNeLKIGDYVGVGWQCSsCHNCEWCERGDEQLCPSVKCTCCEgNIGGFANYLRVNDSS 142
                  5789******************9999999999999999***************888777***********9999***************999998888899*********9544 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0     9e-19   4.1e-15       1     129 [.     187     311 ..     187     312 .. 0.87

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 9e-19
                  ----HHHHHHHHH-.-EEEEEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----EEEEEEEHHHHHHCT--EEE--SSSHHHHHHHHHHHH CS
   PF00107.21   1 GvGlaavqlAkalG.arviavdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggtsganvefdlrklllkektiqGsllgnpeeleealqlla 129
                  G+G++a+++A+ lG ++ +a+++s+ k++ a e+Ga +++n++d d   a+  +    ++ +v  ++  +  f   ++ll+p+G++++vg++  ++++ d++   ++  +i+ s  g+++++ e+lq++a
  MMETSP0890-20130614|25562_1 187 GLGTMALMFAAKLGrKKLYAISGSPAKKRTALEMGANEFLNHNDAD---AMTHAQSSMDFILVTLSTQQKIDFSKFFQLLRPRGTICFVGMV--PPITADVFTMGFTMHNITTSNTGGRKDMIEMLQFCA 311
                  89******************************************95...444444443355555555557788888****************..6999999999999999*****************986 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05     0.083      29      80 ..     170     222 ..     163     260 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
                  G-B-.GGGSEEE-B-------HHHHHHHH---.EEEE--SS--...HHHH--- CS
   PF02826.14  29 llgkelsgktvGiiGlGrIGqavakrlkafgm.kvlaydrskkkeeeeeelga 80 
                  l+ ++ +g ++Gi+GlG +G+ +   ++++g  k++a++ s+ k++++ e+ga
  MMETSP0890-20130614|25562_1 170 LVTQTKKGDKIGILGLGGLGTMALMFAAKLGRkKLYAISGSPAKKRTALEMGA 222
                  56677899***********************9566666666655543333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:01.29
# Mc/sec: 650.17
//
Query:       MMETSP0890-20130614|25589_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-16   58.1   0.1    6.7e-16   58.0   0.1    1.0  1  PF00378.15 Enoyl-CoA hydratase/isomerase family


Domain annotation for each model (and alignments):
>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   4.9e-20   6.7e-16      92     177 ..       2      88 ..       1      89 [] 0.95

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 4.9e-20
                  --EEEE---B-----HHHHHSSEEEEETT-EE--CCCC-----------HHHHH---HHHHHHHH.----EEHHHHHHTTSSSEEE- CS
   PF00378.15  92 pvvAavnGaalGGGlelalacdyriaadeakfglpevklGilpgaggtqrlprlvGvsaAlemil.tgrriradeAlkvGlvdkvvp 177
                  p++Aa+nG a+G+ +  a  cd ++a+ ea f++p++klG+ p  + ++  prl+G++ A++m+   g   +++eA+ +Glv   vp
  MMETSP0890-20130614|25589_1   2 PIIAAMNGPAIGASVTSATLCDAVVASTEATFSTPFAKLGVPPEGCSSFNFPRLMGKETANRMLGpEGWVPNGAEAKVIGLVTDCVP 88 
                  9**************************************************************963788899**********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 333.24
//
Query:       MMETSP0890-20130614|25596_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-72  242.6   0.0    1.2e-68  231.3   0.0    2.2  1  PF02138.13 Beige/BEACH domain
    5.8e-14   51.2   8.9     0.0013   18.3   0.0    6.6  7  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF02138.13  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3   0.0   1.8e-72   1.2e-68      24     270 .]       2     344 ..       1     344 [. 0.96

  Alignments for each domain:
  == domain 1    score: 231.3 bits;  conditional E-value: 1.8e-72
                  --SS-GGG---B---B---SSSS--TT.-GGGB--TTS-----SHHHHHHHHHHHHH--SSS..........................................................................................----B---S--HHHHHHHTTTSTTHHHHHHHH-------TTTSS-BHHHHHHHHHH-TT----B-GGGG.T-GGGGS-TT------...----SS-B--TT-.SSHHHHHHHHHHHHHSHHHHTTHHHHHHHH--------HHHHTT--B-GGG-----......--S.HHHHHHHHHHHHH---------SS----- CS
   PF02138.13  24 RsfndlsqYpvfPwvlsdykseeldls.dkkkfRdLskpigalneerlkklkeklkeleeae..........................................................................................kpflysshysspltvlsylvrlePftslaielqsgkfdeadrlfssieealesvleskndvkEliPEff.ylpeflknkneldlgk...gekvedvelPkwa.kspeeFvylnrkaLEsdyvsenLneWIDliFGykqrgkeaveaknvfkplvyeeav......ikd.eeereaieallknfGqvpkqlFtepHpkr 270
                  Rs++dlsqYpv+Pw+l+dy+s+el ++ ++++fRdLskpigal+ +rl +++e+++  ++++                                                                                          kpfly++hys+p++v  ylvr  P   + + lq+g+fd adr+f s++ a++s+l + +d+kEliPEf+  + +fl n  +++lg+   g+ v dvelP+w+ +sp+  +++ r aLEsdyvs++L  WIDliFGy+q+       +n+f+pl+ye++v      i++ +++  a+e+++++fGq+p+++F++pHp+r
  MMETSP0890-20130614|25596_1   2 RSLHDLSQYPVYPWILTDYTSKELAINkNTTIFRDLSKPIGALDLNRLLNFRERYDAINMHTpsffsqstidqqrtpkntfvvgsgnkvvasvgrnvrnfvtdrlfrssssgndiidqqeddahsfrsgstlsqgiyddplqkndqeldprdKPFLYGTHYSTPGYVAFYLVRAAPE--YTLCLQNGRFDAADRMFISVKGAYDSILANATDLKELIPEFYhGDGSFLLNARRVPLGTtqaGNVVADVELPPWShNSPQLLITKLRAALESDYVSQHLPAWIDLIFGYNQEH-----PDNLFHPLTYEHNVnkirqtITQsHRDMLALETQIDEFGQTPSRIFDQPHPPR 344
                  9***********************99768999*************************6666679****************************************************************************************************************9..666799************************************6689*****************************777*********************************94.....5799**********9*9988445488888**********************97 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     2e-07    0.0013       4      37 ..     462     493 ..     459     493 .. 0.92
   2 ?    3.2   0.0     0.011        78      13      37 ..     519     543 ..     516     544 .. 0.87
   3 !    9.8   0.7   9.5e-05      0.65       4      38 ..     553     591 ..     550     592 .. 0.86
   4 !   13.5   0.0   6.6e-06     0.045       6      39 .]     603     636 ..     599     636 .. 0.93
   5 ?   -1.7   0.0      0.41   2.8e+03      21      36 ..     721     736 ..     717     739 .. 0.86
   6 ?   -2.8   0.0      0.93   6.4e+03      17      28 ..     738     749 ..     729     749 .. 0.82
   7 !    4.6   0.0    0.0041        28      26      39 .]     796     809 ..     793     809 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2e-07
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirl 37 
                  k+  r+H +++t va+  +  +++s+SrDgt++l
  MMETSP0890-20130614|25596_1 462 KSFTRAHRDAITGVACESN--IVVSSSRDGTLKL 493
                  67789**************..***********97 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.011
                  SEEEEEEESSSTEEEEEETTSEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgSrDgtirl 37 
                  p tcv+  +d ++ +++++D  + +
  MMETSP0890-20130614|25596_1 519 PLTCVCLTHDARYTLTAGADARLFI 543
                  779*****************77655 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 9.5e-05
                  EEEEESSSSSEEEEEEESS....STEEEEEETTSEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspd....gpllasgSrDgtirlW 38 
                  +++   H +p+t+v ++         +a+++ D +++lW
  MMETSP0890-20130614|25596_1 553 TTVDNCHDAPITAVTCCKGsssdIYDVATCGLDACVKLW 591
                  5666788888888888888888***************** PP

  == domain 4    score: 13.5 bits;  conditional E-value: 6.6e-06
                  EEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +l+ H+ pVt+va     +++  g +Dg + +Wd
  MMETSP0890-20130614|25596_1 603 ELYDHETPVTSVALRAFTNIVTAGAEDGQLLIWD 636
                  699**************99999999********9 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.41
                  SSSTEEEEEETTSEEE CS
   PF00400.27  21 pdgpllasgSrDgtir 36 
                  p+gp+++ +  Dg i 
  MMETSP0890-20130614|25596_1 721 PNGPYIFVAVGDGDIV 736
                  789******9999885 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 0.93
                  EEEESSSTEEEE CS
   PF00400.27  17 vafspdgpllas 28 
                  +++s++ p++++
  MMETSP0890-20130614|25596_1 738 LDWSQSTPIILT 749
                  79***9999887 PP

  == domain 7    score: 4.6 bits;  conditional E-value: 0.0041
                  EEEEETTSEEEEEE CS
   PF00400.27  26 lasgSrDgtirlWd 39 
                  l+s+ +D+t++ W+
  MMETSP0890-20130614|25596_1 796 LISAAEDCTLKAWE 809
                  89***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.40s 00:00:01.60 Elapsed: 00:00:00.89
# Mc/sec: 2250.96
//
Query:       MMETSP0890-20130614|25606_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2   11.4  15.6       0.22   11.2  10.8    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        1.1    7.1  12.2        1.3    6.8   8.5    1.1  1  PF02724.9  CDC45-like protein
        2.1    8.0  30.5        2.9    7.6  21.2    1.2  1  PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
        6.6    4.7   6.0        6.7    4.7   4.1    1.0  1  PF03115.9  Astrovirus capsid protein precursor


Domain annotation for each model (and alignments):
>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  10.8   6.5e-05      0.22     250     296 ..     103     152 ..      36     154 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.5e-05
                  ........XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX------------ CS
    PF03153.8 250 kskie...iQvDGagddssdeseedeeadede..eekdkvieeDlddseDDv 296
                  ++  +      DG+ dd++d  +  +++ded+  e +d++ie D+dd++DD+
  MMETSP0890-20130614|25606_1 103 DDDDAtasEDEDGSHDDDDD--DFVDDDDEDDydEMDDQSIEIDDDDDDDDE 152
                  22111333455666666665..223333433333445555666666655554 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.5   0.00037       1.3      96     173 ..      64     139 ..      45     154 .. 0.40

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00037
    PF02724.9  96 sdqvivfddgdieeelekeeeerd.....ayealvemkeeee.......eesdedsdseddeeeeessasekrksesdedeeddddeede 173
                   + v++  +++i+ el ++ e++            +++ +++         s++++ s+dd++++  +++++++ ++          +d+
  MMETSP0890-20130614|25606_1  64 GEAVLLAHEEKIQAELREIRETKApvplgV-----KSRTHDRlgddddaTASEDEDGSHDDDDDDFVDDDDEDDYDE---------MDDQ 139
                  355666667777777777744444332210.....111111122222232222222222222222222222222111.........1111 PP

>> PF11705.3  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  21.2   0.00084       2.9     159     231 ..      85     152 ..      57     154 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00084
    PF11705.3 159 eeklsalekkekeldaedeeeedkkeeeeeeeeeeedddfeDdddddedDYnaekYFDnGed.....DdygDedgdde 231
                  +++   l  k++  d++ ++++ +  e+e++  ++ dddf Dddd+  dDY      D+ +d     Dd++D d+d e
  MMETSP0890-20130614|25606_1  85 TKAPVPLGVKSRTHDRLGDDDDATASEDEDGSHDDDDDDFVDDDDE--DDY------DEMDDqsieiDDDDD-DDD-E 152
                  445556667888888998888888888***************9999..***......444555556777555.333.3 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.1     0.002       6.7     644     703 ..      82     150 ..      32     154 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.002
    PF03115.9 644 lpeekael.seleerave......daeepaed..lvseeetdtetestedesdeldrfdlkassgsese 703
                  ++e+ka +  ++++r+++      da++++++  + +++  d  ++++ed+ de+d   ++  ++++++
  MMETSP0890-20130614|25606_1  82 IRETKAPVpLGVKSRTHDrlgdddDATASEDEdgSHDDDDDDFVDDDDEDDYDEMDDQSIEIDDDDDDD 150
                  333333331344444443222221222222221123333333333333333334444433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:00.78
# Mc/sec: 476.20
//
Query:       MMETSP0890-20130614|25605_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-31  105.7   9.1    7.6e-11   41.3   0.0    7.1  8  PF13414.1  TPR repeat
    9.1e-19   65.9   0.0       0.14   12.3   0.0    7.5  7  PF13431.1  Tetratricopeptide repeat
    4.1e-18   63.6  12.7     0.0048   16.5   0.0    9.0  9  PF07719.12 Tetratricopeptide repeat
    7.8e-16   57.0  18.7    0.00017   21.7   0.0    8.9  8  PF13428.1  Tetratricopeptide repeat
    2.5e-15   55.2   8.2    0.00099   18.4   0.0    8.8  9  PF00515.23 Tetratricopeptide repeat
    3.6e-13   49.1  16.3    0.00056   19.6   0.2    6.5  6  PF13424.1  Tetratricopeptide repeat
    8.3e-13   48.5  13.8    2.1e-06   28.1   0.2    6.8  7  PF13432.1  Tetratricopeptide repeat
    6.8e-10   37.8   2.3       0.15   11.8   0.0    7.8  8  PF13181.1  Tetratricopeptide repeat
    0.00041   19.3   0.1      0.085   11.6   0.1    2.6  2  PF04910.9  Transcriptional repressor TCF25
     0.0032   17.7   3.7      1e+02    3.5   0.0    6.4  7  PF13174.1  Tetratricopeptide repeat
     0.0065   16.2   6.5      0.084   12.6   0.2    4.3  4  PF13374.1  Tetratricopeptide repeat
     0.0088   15.7  14.7       0.81    9.4   1.0    5.9  6  PF13371.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2     1e-08   1.2e-05       7      67 ..      44     112 ..      41     114 .. 0.87
   2 !    6.5   0.0    0.0049       5.6      30      58 ..     110     137 ..     109     156 .. 0.83
   3 ?    4.3   0.1     0.024        28      12      67 ..     252     319 ..     242     321 .. 0.59
   4 !   13.0   0.0   4.7e-05     0.054       3      69 .]     290     358 ..     288     358 .. 0.87
   5 !   27.4   0.0   1.5e-09   1.7e-06       3      69 .]     327     392 ..     325     392 .. 0.93
   6 !   11.7   0.1   0.00012      0.14      17      68 ..     375     426 ..     373     427 .. 0.80
   7 !   41.3   0.0   6.7e-14   7.6e-11       3      69 .]     430     499 ..     428     499 .. 0.95
   8 !    6.2   0.0    0.0062         7      24      58 ..     489     523 ..     488     533 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1e-08
    PF13414.1   7 kelGnalfkeg..dydeAieayekAleldpnnae.......lyynlAlaylklgkdyeeAledyekAlel 67 
                  k ++ +lfk++  +y+eA + ++kA+ + + + +       ly+n++++ ++ g   e  led+  +l+ 
  MMETSP0890-20130614|25605_1  44 KMKAFELFKRNppEYEEAADWFSKAITIAEAHESlvpqriaLYNNRSACRERFG-ALELSLEDCAVVLAA 112
                  77889999999999*************99777666777787*************.89*******887765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0049
    PF13414.1  30 leldpnnaelyynlAlaylklgkdyeeAl 58 
                  l+ ++ +a++  ++A +++klg++  +Al
  MMETSP0890-20130614|25605_1 110 LAANKTHAKVRRRRARIFEKLGRH-ADAL 137
                  678999****************75.6775 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.024
    PF13414.1  12 alfkegdydeAieayekAleld.......pnnae.......lyynlAlaylklgkdyeeAledyekAlel 67 
                  ++ + ++y+eA +a e+Al l        +++ +       ++   +l      +   e  e+y+++lel
  MMETSP0890-20130614|25605_1 252 VYTYTKRYQEAQAAVERALTLLqkieassSSH-VsskclaeIWRYVGLFRHLTHE-LSESDEAYRRSLEL 319
                  67788999999999999998852232322222.1233333366666666666664.45566666666665 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 4.7e-05
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnn...aelyynlAlaylklgkdyeeAledyekAleldP 69 
                  Ae ++  G      +++ e+ eay+++lel+ ++   ae    lA ++   g+  ++A +++ +Al+ dP
  MMETSP0890-20130614|25605_1 290 AEIWRYVGLFRHLTHELSESDEAYRRSLELETDSllrAETRVKLAGVLVDSGE-ADKAEAELVQALKEDP 358
                  666777777777778899999**********99766699*************6.79***********998 PP

  == domain 5    score: 27.4 bits;  conditional E-value: 1.5e-09
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  Ae+   l+ +l   g+ d+A++++ +Al+ dp++ ++y  +A+++  +  d ++A +d+ek+++ +P
  MMETSP0890-20130614|25605_1 327 AETRVKLAGVLVDSGEADKAEAELVQALKEDPESSDVYMHRAQLHVIRR-DLQSAQADLEKCIKAAP 392
                  6777789999*************************************98.78***********9987 PP

  == domain 6    score: 11.7 bits;  conditional E-value: 0.00012
    PF13414.1  17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68 
                  +d++ A + +ek+++  p++  + ++lA +++++  d  e  e+   + +l+
  MMETSP0890-20130614|25605_1 375 RDLQSAQADLEKCIKAAPDHVLARLRLATVLIHNQVDSMEIEEHMLACEKLA 426
                  67889999************************97536666666666555555 PP

  == domain 7    score: 41.3 bits;  conditional E-value: 6.7e-14
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylkl...gkdyeeAledyekAleldP 69 
                  +e++  +G+ ++ +++ + Ai++++kA++ld+ n++ +yn + a+++l   g+d+++  + +e Al+ dP
  MMETSP0890-20130614|25605_1 430 SEVYQVKGEIALANNEIETAIQHFDKAIALDSTNPVPLYNKGMALIQLpdgGRDPQRTKDLFEAALKVDP 499
                  689999******************************************88878****************9 PP

  == domain 8    score: 6.2 bits;  conditional E-value: 0.0062
    PF13414.1  24 eayekAleldpnnaelyynlAlaylklgkdyeeAl 58 
                  +++e Al+ dp + +++ +l+ + l+l   +++A+
  MMETSP0890-20130614|25605_1 489 DLFEAALKVDPTCMVALMRLSELKLQLAATFDQAR 523
                  579***********************985566554 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0035         4       6      33 ..     110     137 ..     108     138 .. 0.93
   2 ?    6.1   0.0     0.012        14       1      34 []     312     348 ..     312     348 .. 0.95
   3 !    8.1   0.0    0.0027         3       4      33 ..     352     381 ..     349     382 .. 0.90
   4 !   11.7   0.0   0.00019      0.22       2      31 ..     384     414 ..     383     417 .. 0.85
   5 !    9.7   0.0   0.00079       0.9       7      34 .]     424     451 ..     418     451 .. 0.91
   6 !   12.3   0.0   0.00012      0.14       2      24 ..     453     475 ..     452     485 .. 0.90
   7 ?   -1.6   0.0       3.5     4e+03       1      11 [.     490     500 ..     490     513 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0035
    PF13431.1   6 leldPnnadaynnLAelllnnGdleeAe 33 
                  l+ ++++a +++++A+++ ++G++++A+
  MMETSP0890-20130614|25605_1 110 LAANKTHAKVRRRRARIFEKLGRHADAL 137
                  7889*********************996 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.012
    PF13431.1   1 lyekaleldPnn...adaynnLAelllnnGdleeAeq 34 
                  +y+++lel+ ++   a+ +  LA +l + G+ ++Ae+
  MMETSP0890-20130614|25605_1 312 AYRRSLELETDSllrAETRVKLAGVLVDSGEADKAEA 348
                  69*********************************85 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0027
    PF13431.1   4 kaleldPnnadaynnLAelllnnGdleeAe 33 
                  +al+ dP+++d+y  +A+l+  + dl+ A+
  MMETSP0890-20130614|25605_1 352 QALKEDPESSDVYMHRAQLHVIRRDLQSAQ 381
                  79*****************99999998887 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 0.00019
    PF13431.1   2 yekaleldPnnadaynnLAelllnnG.dlee 31 
                  +ek+++ +P+++ a+ +LA++l  n+ d++e
  MMETSP0890-20130614|25605_1 384 LEKCIKAAPDHVLARLRLATVLIHNQvDSME 414
                  69*******************9877656665 PP

  == domain 5    score: 9.7 bits;  conditional E-value: 0.00079
    PF13431.1   7 eldPnnadaynnLAelllnnGdleeAeq 34 
                  +l+P+ +++y+ ++e+ l+n++ e+A+q
  MMETSP0890-20130614|25605_1 424 KLAPDMSEVYQVKGEIALANNEIETAIQ 451
                  689***********************98 PP

  == domain 6    score: 12.3 bits;  conditional E-value: 0.00012
    PF13431.1   2 yekaleldPnnadaynnLAelll 24 
                  + ka++ld +n++ ++n++ +l 
  MMETSP0890-20130614|25605_1 453 FDKAIALDSTNPVPLYNKGMALI 475
                  89*****************9885 PP

  == domain 7    score: -1.6 bits;  conditional E-value: 3.5
    PF13431.1   1 lyekaleldPn 11 
                  l+e al+ dP+
  MMETSP0890-20130614|25605_1 490 LFEAALKVDPT 500
                  6999*****97 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0053       6.1      16      32 ..      57      73 ..      57      75 .. 0.88
   2 ?    4.5   0.0     0.031        35       2      21 ..     118     137 ..     117     139 .. 0.88
   3 !    9.5   0.1   0.00076      0.87      10      30 ..     252     272 ..     251     275 .. 0.90
   4 ?    4.7   0.0     0.027        31       1      31 [.     290     320 ..     290     323 .. 0.92
   5 !    7.4   0.0    0.0035       3.9       6      33 ..     332     359 ..     327     360 .. 0.86
   6 !   11.5   0.0   0.00018       0.2       2      34 .]     362     394 ..     361     394 .. 0.95
   7 !   16.5   0.0   4.2e-06    0.0048       2      34 .]     431     463 ..     430     463 .. 0.92
   8 ?   -2.5   0.0       5.2   5.9e+03       4      14 ..     467     477 ..     466     477 .. 0.86
   9 ?    2.3   0.0      0.15   1.7e+02      22      33 ..     489     500 ..     488     501 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0053
                 -HHHHHHHHHHHHHH-T CS
   PF07719.12 16 dyeeAleafekAleldP 32
                 +yeeA+++f kA+ ++ 
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAITIAE 73
                 6************9876 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.031
                  HHHHHHHHHHHHTT-HHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAl 21 
                  ++  +++++ +klg++++Al
  MMETSP0890-20130614|25605_1 118 KVRRRRARIFEKLGRHADAL 137
                  56689*************97 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00076
                  HHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafekAlel 30 
                  +y + ++y+eA +a e+Al l
  MMETSP0890-20130614|25605_1 252 VYTYTKRYQEAQAAVERALTL 272
                  58899**************87 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.027
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                  ae++ + Gl      ++ e  ea++++lel+
  MMETSP0890-20130614|25605_1 290 AEIWRYVGLFRHLTHELSESDEAYRRSLELE 320
                  78999999999999***************96 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0035
                  HHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAleldPn 33 
                   l+ ++  +g+ ++A++ + +Al+ dP+
  MMETSP0890-20130614|25605_1 332 KLAGVLVDSGEADKAEAELVQALKEDPE 359
                  577788899******************7 PP

  == domain 6    score: 11.5 bits;  conditional E-value: 0.00018
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++++ +++++  ++d++ A +++ek+++ +P++
  MMETSP0890-20130614|25605_1 362 DVYMHRAQLHVIRRDLQSAQADLEKCIKAAPDH 394
                  68999**************************97 PP

  == domain 7    score: 16.5 bits;  conditional E-value: 4.2e-06
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  e++   G++++++++ e A+++f+kA++ld +n
  MMETSP0890-20130614|25605_1 431 EVYQVKGEIALANNEIETAIQHFDKAIALDSTN 463
                  678889************************886 PP

  == domain 8    score: -2.5 bits;  conditional E-value: 5.2
                  HHHHHHHHHHT CS
   PF07719.12   4 lynlGlayykl 14 
                  lyn G+a+++l
  MMETSP0890-20130614|25605_1 467 LYNKGMALIQL 477
                  799***99875 PP

  == domain 9    score: 2.3 bits;  conditional E-value: 0.15
                  HHHHHHHHH-TT CS
   PF07719.12  22 eafekAleldPn 33 
                  ++fe Al+ dP+
  MMETSP0890-20130614|25605_1 489 DLFEAALKVDPT 500
                  68*********8 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.64   7.3e+02      16      32 ..      57      73 ..      47      84 .. 0.84
   2 ?    4.3   0.1     0.064        73       3      21 ..     119     137 ..     117     153 .. 0.88
   3 ?    3.7   0.1     0.098   1.1e+02       2      30 ..     244     272 ..     243     278 .. 0.84
   4 !   21.7   0.0   1.5e-07   0.00017       2      44 .]     328     370 ..     327     370 .. 0.95
   5 !   16.6   0.3   6.9e-06    0.0079       3      43 ..     363     403 ..     361     404 .. 0.94
   6 !   10.2   0.0    0.0008      0.91       8      39 ..     437     468 ..     430     477 .. 0.82
   7 ?    6.3   0.0     0.014        16      16      43 ..     483     510 ..     471     511 .. 0.89
   8 ?    3.3   0.1      0.13   1.4e+02      10      39 ..     515     544 ..     509     556 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.64
    PF13428.1 16 dpdeAiallrralalaP 32
                 +++eA++++ +a+  a 
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAITIAE 73
                 689*********97665 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.064
    PF13428.1   3 allalarallalGdpdeAi 21 
                  +++++ar+++ lG++++A+
  MMETSP0890-20130614|25605_1 119 VRRRRARIFEKLGRHADAL 137
                  6889***********9996 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.098
    PF13428.1   2 eallalarallalGdpdeAiallrralal 30 
                  e+l +++ ++    +++eA a+ +ral l
  MMETSP0890-20130614|25605_1 244 ETLVQMVTVYTYTKRYQEAQAAVERALTL 272
                  67788999999999999999999999865 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 1.5e-07
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  e++ +la +l ++G+ d+A+a l +al+ +P++ +++++ a+l
  MMETSP0890-20130614|25605_1 328 ETRVKLAGVLVDSGEADKAEAELVQALKEDPESSDVYMHRAQL 370
                  78899**********************************9997 PP

  == domain 5    score: 16.6 bits;  conditional E-value: 6.9e-06
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLar 43 
                  +++ +a+++  + d++ A a l++ +++aPd+  a+l+La 
  MMETSP0890-20130614|25605_1 363 VYMHRAQLHVIRRDLQSAQADLEKCIKAAPDHVLARLRLAT 403
                  67889**********************************96 PP

  == domain 6    score: 10.2 bits;  conditional E-value: 0.0008
    PF13428.1   8 arallalGdpdeAiallrralalaPddaeall 39 
                  +++ la+++ + Ai+++++a+al+ +++  l+
  MMETSP0890-20130614|25605_1 437 GEIALANNEIETAIQHFDKAIALDSTNPVPLY 468
                  78899*******************99987554 PP

  == domain 7    score: 6.3 bits;  conditional E-value: 0.014
    PF13428.1  16 dpdeAiallrralalaPddaealllLar 43 
                  dp++  +l+++al+ +P+   al++L +
  MMETSP0890-20130614|25605_1 483 DPQRTKDLFEAALKVDPTCMVALMRLSE 510
                  799999******************9987 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.13
    PF13428.1  10 allalGdpdeAiallrralalaPddaeall 39 
                  + +   +  + +++l+ra  ++ d++e+l 
  MMETSP0890-20130614|25605_1 515 LAATFDQARDVVDMLDRATVHCRDNDELLE 544
                  445567778889*************99875 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0023       2.6      16      31 ..      57      72 ..      57      75 .. 0.90
   2 ?    4.5   0.0     0.023        26       2      21 ..     118     137 ..     117     138 .. 0.87
   3 !    6.5   0.1    0.0052         6      10      30 ..     252     272 ..     251     275 .. 0.91
   4 ?    0.4   0.0      0.44     5e+02      16      31 ..     305     320 ..     290     322 .. 0.74
   5 ?    0.1   0.0      0.55   6.2e+02      15      33 ..     341     359 ..     328     360 .. 0.84
   6 !    8.4   0.0    0.0013       1.4       2      34 .]     362     394 ..     361     394 .. 0.95
   7 !   18.4   0.0   8.7e-07   0.00099       2      34 .]     431     463 ..     430     463 .. 0.91
   8 ?   -0.4   0.0      0.81   9.2e+02       4      14 ..     467     477 ..     465     477 .. 0.86
   9 ?    2.9   0.0     0.073        83      21      34 .]     488     501 ..     482     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
                 -HHHHHHHHHHHHHHH CS
   PF00515.23 16 kydeAleyyekALeln 31
                 +y+eA + ++kA+++ 
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAITIA 72
                 6************997 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.023
                  HHHHHHHHHHHHTT-HHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAl 21 
                  k+  +++ ++ klg++ +Al
  MMETSP0890-20130614|25605_1 118 KVRRRRARIFEKLGRHADAL 137
                  666799*************8 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0052
                  HHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  10 aylklgkydeAleyyekALel 30 
                  +y + ++y+eA ++ e+AL+l
  MMETSP0890-20130614|25605_1 252 VYTYTKRYQEAQAAVERALTL 272
                  69999**************98 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.44
                  -HHHHHHHHHHHHHHH CS
   PF00515.23  16 kydeAleyyekALeln 31 
                  ++ e  e+y++ Lel+
  MMETSP0890-20130614|25605_1 305 ELSESDEAYRRSLELE 320
                  5566669*******95 PP

  == domain 5    score: 0.1 bits;  conditional E-value: 0.55
                  T-HHHHHHHHHHHHHHHTT CS
   PF00515.23  15 gkydeAleyyekALelnPn 33 
                  g+ d+A++   +AL+ +P+
  MMETSP0890-20130614|25605_1 341 GEADKAEAELVQALKEDPE 359
                  67799999999******97 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                  +++  +++++    +++ A ++ ek+++  P++
  MMETSP0890-20130614|25605_1 362 DVYMHRAQLHVIRRDLQSAQADLEKCIKAAPDH 394
                  789***************************996 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 8.7e-07
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                  +++  +G + l +++ + A+++++kA+ l+ +n
  MMETSP0890-20130614|25605_1 431 EVYQVKGEIALANNEIETAIQHFDKAIALDSTN 463
                  567779************************987 PP

  == domain 8    score: -0.4 bits;  conditional E-value: 0.81
                  HHHHHHHHHHT CS
   PF00515.23   4 lynlGnaylkl 14 
                  lyn+G+a+ +l
  MMETSP0890-20130614|25605_1 467 LYNKGMALIQL 477
                  8*****99775 PP

  == domain 9    score: 2.9 bits;  conditional E-value: 0.073
                  HHHHHHHHHHHTTH CS
   PF00515.23  21 leyyekALelnPnn 34 
                   + +e AL+++P++
  MMETSP0890-20130614|25605_1 488 KDLFEAALKVDPTC 501
                  5789********86 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00038      0.44      21      66 ..      58     103 ..      57     115 .. 0.87
   2 ?    1.8   0.0      0.18     2e+02       9      25 ..     121     137 ..     112     140 .. 0.63
   3 !   13.9   0.1   3.1e-05     0.035      45      78 .]     242     275 ..     216     280 .. 0.72
   4 !   19.6   0.2   4.9e-07   0.00056       3      74 ..     288     355 ..     286     359 .. 0.93
   5 ?    3.7   0.1     0.044        51       6      35 ..     362     391 ..     356     408 .. 0.58
   6 ?    5.6   0.0     0.012        13      43      76 ..     427     460 ..     414     462 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
    PF13424.1  21 ydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAl 66 
                  y+eA +++ ka+++++ +    p++  ++nn + + ++ g ++ +l
  MMETSP0890-20130614|25605_1  58 YEEAADWFSKAITIAEAHESLVPQRIALYNNRSACRERFGALELSL 103
                  9*************99999999*********999988888777666 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.18
    PF13424.1   9 nnlalvlrrlgdydeAl 25 
                   + a ++++lg++ +Al
  MMETSP0890-20130614|25605_1 121 RRRARIFEKLGRHADAL 137
                  45566666666666665 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 3.1e-05
    PF13424.1  45 taralnnlanlylalgdydeAleylekAleiaek 78 
                  ++ +l ++ ++y + ++y+eA +  e+Al++ +k
  MMETSP0890-20130614|25605_1 242 VLETLVQMVTVYTYTKRYQEAQAAVERALTLLQK 275
                  5667777777777777777777777777776654 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 4.9e-07
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                  +la i+ + +l+ +  +++ e+ e y+++lel      d++ +a +   la +++  g+ d+A++ l +Al+
  MMETSP0890-20130614|25605_1 288 CLAEIWRYVGLFRHLTHELSESDEAYRRSLELE----TDSLLRAETRVKLAGVLVDSGEADKAEAELVQALK 355
                  689999999*9999****************995....69999***********************9999996 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.044
    PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalell 35 
                  +++   a+++   +d+++A++ +ek+++ +
  MMETSP0890-20130614|25605_1 362 DVYMHRAQLHVIRRDLQSAQADLEKCIKAA 391
                  445555555555666666666666665543 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.012
    PF13424.1  43 pdtaralnnlanlylalgdydeAleylekAleia 76 
                  pd   ++   +++ la ++ + A++++ kA++++
  MMETSP0890-20130614|25605_1 427 PDMSEVYQVKGEIALANNEIETAIQHFDKAIALD 460
                  5566678888888888888999999999998876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.4   2.7e+03      46      61 ..      57      72 ..      49      76 .. 0.79
   2 ?    6.1   0.2     0.014        16      25      57 ..     111     144 ..     107     153 .. 0.80
   3 ?    4.1   0.0     0.062        71      10      27 ..     256     273 ..     251     322 .. 0.71
   4 !   28.1   0.2   1.8e-09   2.1e-06       3      64 ..     333     394 ..     331     395 .. 0.95
   5 !    8.4   0.1    0.0028       3.1      11      43 ..     375     407 ..     374     409 .. 0.91
   6 !    8.0   0.0    0.0036       4.1      25      65 .]     424     464 ..     420     464 .. 0.89
   7 !    9.9   0.0   0.00095       1.1       4      62 ..     437     499 ..     436     533 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2.4
    PF13432.1 46 rldeAaallraalala 61
                 +++eAa ++ +a+ +a
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAITIA 72
                 6899999999998655 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.014
    PF13432.1  25 alaPeaaeallllaeallrlgrldeAa.allraa 57 
                  a++  +a ++ ++a+++ +lgr+++A+ +  + +
  MMETSP0890-20130614|25605_1 111 AANKTHAKVRRRRARIFEKLGRHADALvEICADL 144
                  5555588999****************97776655 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.062
    PF13432.1  10 aGdydeAlaaleaalala 27 
                   ++y+eA+aa e+al l 
  MMETSP0890-20130614|25605_1 256 TKRYQEAQAAVERALTLL 273
                  578888888888888665 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 1.8e-09
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                  lA  l+++G+ d+A+a l +al+++Pe  ++++ +a+++  + +l+ A a l++ +++aPd+
  MMETSP0890-20130614|25605_1 333 LAGVLVDSGEADKAEAELVQALKEDPESSDVYMHRAQLHVIRRDLQSAQADLEKCIKAAPDH 394
                  78899********************************************9999999****96 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.0028
    PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallr 43 
                  +d++ A+a le+ +++aP+++ a+l+la +l +
  MMETSP0890-20130614|25605_1 375 RDLQSAQADLEKCIKAAPDHVLARLRLATVLIH 407
                  78999***********************99865 PP

  == domain 6    score: 8.0 bits;  conditional E-value: 0.0036
    PF13432.1  25 alaPeaaeallllaeallrlgrldeAaallraalalaPddp 65 
                  +laP+  e+++  +e++l+ ++ + A++ +++a+al++ +p
  MMETSP0890-20130614|25605_1 424 KLAPDMSEVYQVKGEIALANNEIETAIQHFDKAIALDSTNP 464
                  67799999999999*********999999999999998876 PP

  == domain 7    score: 9.9 bits;  conditional E-value: 0.00095
    PF13432.1   4 ArallraGdydeAlaaleaalala...Peaaeallllaeall.rlgrldeAa.allraalalaP 62 
                  ++ +l++++ + A++++++a+al+   P  + +  + a + l + gr ++    l++aal+ +P
  MMETSP0890-20130614|25605_1 437 GEIALANNEIETAIQHFDKAIALDstnP-VPLYNKGMALIQLpDGGRDPQRTkDLFEAALKVDP 499
                  678999******************8886.55577777777776669999999999999999888 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.36   4.2e+02      16      32 ..      57      73 ..      57      75 .. 0.88
   2 ?    3.0   0.0     0.081        92       2      21 ..     118     137 ..     117     141 .. 0.87
   3 ?    3.2   0.0      0.07        80      10      30 ..     252     272 ..     244     276 .. 0.87
   4 ?   -0.9   0.0       1.4   1.6e+03      18      31 ..     307     320 ..     303     322 .. 0.84
   5 ?    3.4   0.0     0.062        71       7      32 ..     333     358 ..     327     360 .. 0.81
   6 ?    5.0   0.0     0.018        21       7      34 .]     367     394 ..     361     394 .. 0.77
   7 !   11.8   0.0   0.00013      0.15       2      32 ..     431     461 ..     430     464 .. 0.91
   8 ?   -1.2   0.0       1.8   2.1e+03       4      14 ..     467     477 ..     466     477 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.36
                 -HHHHHHHHH---HHHH CS
    PF13181.1 16 dydkAkeylekalelkp 32
                 +y++A   + ka+ ++ 
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAITIAE 73
                 59***********9985 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.081
                  --TTT---HHHHTT-HHHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAk 21 
                  k+++++++i+++lG++  A+
  MMETSP0890-20130614|25605_1 118 KVRRRRARIFEKLGRHADAL 137
                  7899***********98886 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.07
                  HHHHTT-HHHHHHHHH---HH CS
    PF13181.1  10 iYrqlGdydkAkeylekalel 30 
                  +Y  +++y +A ++ e+al l
  MMETSP0890-20130614|25605_1 252 VYTYTKRYQEAQAAVERALTL 272
                  78899*************987 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 1.4
                  HHHHHHHH---HHH CS
    PF13181.1  18 dkAkeylekalelk 31 
                  +++ e++++ lel 
  MMETSP0890-20130614|25605_1 307 SESDEAYRRSLELE 320
                  7899******9985 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.062
                  ---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   7 lGdiYrqlGdydkAkeylekalelkp 32 
                  l+ ++ + G+ dkA++ l +al+ +p
  MMETSP0890-20130614|25605_1 333 LAGVLVDSGEADKAEAELVQALKEDP 358
                  66677889*************99877 PP

  == domain 6    score: 5.0 bits;  conditional E-value: 0.018
                  ---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   7 lGdiYrqlGdydkAkeylekalelkprn 34 
                  +++++    d  +A + lek+++ +p++
  MMETSP0890-20130614|25605_1 367 RAQLHVIRRDLQSAQADLEKCIKAAPDH 394
                  5555555668899************975 PP

  == domain 7    score: 11.8 bits;  conditional E-value: 0.00013
                  --TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp 32 
                  ++y  +G+i + +++++ A++++ ka+ l+ 
  MMETSP0890-20130614|25605_1 431 EVYQVKGEIALANNEIETAIQHFDKAIALDS 461
                  68999***********************997 PP

  == domain 8    score: -1.2 bits;  conditional E-value: 1.8
                  TTT---HHHHT CS
    PF13181.1   4 yynlGdiYrql 14 
                  +yn+G+++ ql
  MMETSP0890-20130614|25605_1 467 LYNKGMALIQL 477
                  89*****9997 PP

>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   7.4e-05     0.085      38      80 ..     241     283 ..     213     295 .. 0.79
   2 !    4.8   0.0    0.0092        10      46      75 ..     429     458 ..     427     470 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.4e-05
    PF04910.9  38 YHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsp 80 
                    ++tL+q+  vy+ ++ +++A++ +eraL +l+++  +s s 
  MMETSP0890-20130614|25605_1 241 VVLETLVQMVTVYTYTKRYQEAQAAVERALTLLQKIEASSSSH 283
                  5579******************************887776654 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0092
    PF04910.9  46 lsevyreqgdfevAndlieraLfilervfh 75 
                  +sevy+ +g+ + An+ ie a+ ++++++ 
  MMETSP0890-20130614|25605_1 429 MSEVYQVKGEIALANNEIETAIQHFDKAIA 458
                  89************************9875 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.5   6.2e+03      15      27 ..      57      69 ..      47      71 .. 0.80
   2 ?   -0.2   0.0       1.4   1.6e+03       5      20 ..     122     137 ..     119     144 .. 0.89
   3 ?   -1.0   0.1       2.5   2.8e+03      13      25 ..     263     275 ..     246     278 .. 0.61
   4 ?    3.5   0.0     0.092     1e+02      13      33 .]     333     360 ..     323     360 .. 0.76
   5 ?    3.0   0.0      0.13   1.5e+02       3      33 .]     364     394 ..     362     394 .. 0.79
   6 ?    0.2   0.0         1   1.2e+03       9      28 ..     439     458 ..     436     461 .. 0.77
   7 ?    3.4   0.0     0.099   1.1e+02       3      31 ..     467     499 ..     467     500 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHHH CS
    PF13174.1 15 dtdeAlealerli 27
                 +++eA + + + i
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAI 69
                 6899999999887 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHHHHH CS
    PF13174.1   5 klalsyyklgdtdeAl 20 
                  ++a++++klg++++Al
  MMETSP0890-20130614|25605_1 122 RRARIFEKLGRHADAL 137
                  789*****99999996 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 2.5
                  HHHHHHHHHHHHH CS
    PF13174.1  13 lgdtdeAlealer 25 
                  +   ++Al++l++
  MMETSP0890-20130614|25605_1 263 QAAVERALTLLQK 275
                  2344566666665 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.092
                  H.......HHHHHHHHHHHHHHHH-TT- CS
    PF13174.1  13 l.......gdtdeAlealerlikeyPdS 33 
                  l       g++d+A + l + +ke P+S
  MMETSP0890-20130614|25605_1 333 LagvlvdsGEADKAEAELVQALKEDPES 360
                  2344444489****************98 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerlikeyPdS 33 
                  + ++a+++    d + A + le++ik  Pd+
  MMETSP0890-20130614|25605_1 364 YMHRAQLHVIRRDLQSAQADLEKCIKAAPDH 394
                  6667777774349999*************96 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 1
                  HHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   9 syyklgdtdeAlealerlik 28 
                  + +++++ + A++ +++ i+
  MMETSP0890-20130614|25605_1 439 IALANNEIETAIQHFDKAIA 458
                  5556568999*****99986 PP

  == domain 7    score: 3.4 bits;  conditional E-value: 0.099
                  HHHHHHHHHHH....HHHHHHHHHHHHHHHH-T CS
    PF13174.1   3 lyklalsyykl....gdtdeAlealerlikeyP 31 
                  ly+ ++++++l     d+++ ++++e  +k  P
  MMETSP0890-20130614|25605_1 467 LYNKGMALIQLpdggRDPQRTKDLFEAALKVDP 499
                  8999*****9999955999*******9998666 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   2.5e+02      17      35 ..      57      75 ..      57      80 .. 0.92
   2 ?   -1.7   0.0       2.5   2.8e+03       9      22 ..     124     137 ..     123     138 .. 0.87
   3 !   12.6   0.2   7.4e-05     0.084       2      34 ..     243     275 ..     242     279 .. 0.87
   4 ?    1.9   0.0      0.18     2e+02       2      29 ..     327     354 ..     326     355 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.22
    PF13374.1 17 ryeeAlaleeealairrrl 35
                 +yeeA +++ +a +i +++
  MMETSP0890-20130614|25605_1 57 EYEEAADWFSKAITIAEAH 75
                 59**************998 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.5
    PF13374.1   9 AlalrargryeeAl 22 
                  A+++ ++gr+++Al
  MMETSP0890-20130614|25605_1 124 ARIFEKLGRHADAL 137
                  7888999****997 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 7.4e-05
    PF13374.1   2 aaalnnLAlalrargryeeAlaleeealairrr 34 
                  + +l     ++  ++ry+eA a +e+al++ ++
  MMETSP0890-20130614|25605_1 243 LETLVQMVTVYTYTKRYQEAQAAVERALTLLQK 275
                  6677778889*******************9887 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.18
    PF13374.1   2 aaalnnLAlalrargryeeAlaleeeal 29 
                  a ++  LA +l + g+ ++A+a + +al
  MMETSP0890-20130614|25605_1 327 AETRVKLAGVLVDSGEADKAEAELVQAL 354
                  6677789*************99988887 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3      0.08        91      11      71 ..      65     125 ..      60     126 .. 0.85
   2 ?    5.1   0.3     0.016        19      15      49 ..     103     137 ..      97     154 .. 0.86
   3 ?    1.1   0.2      0.27   3.1e+02       6      58 ..     254     319 ..     251     334 .. 0.57
   4 !    7.1   0.3    0.0039       4.4      28      73 .]     326     371 ..     311     371 .. 0.82
   5 !    9.4   1.0   0.00071      0.81      16      66 ..     348     398 ..     335     404 .. 0.80
   6 ?    2.5   0.0       0.1   1.2e+02       4      42 ..     439     477 ..     437     499 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.08
    PF13371.1  11 ferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaeliraq 71 
                  f +A+ ++e    l P++  ++  r  ++++ g+l+  +ed    l+  +++  +++ ra+
  MMETSP0890-20130614|25605_1  65 FSKAITIAEAHESLVPQRIALYNNRSACRERFGALELSLEDCAVVLAANKTHAKVRRRRAR 125
                  77899999999999***************************99999877766666665555 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.016
    PF13371.1  15 LavverllllaPddpyerRDrGlllaqlgclaaAa 49 
                  L+ ++ +l+ +  ++  rR r+ + ++lg++a A+
  MMETSP0890-20130614|25605_1 103 LEDCAVVLAANKTHAKVRRRRARIFEKLGRHADAL 137
                  66677788888889999***************998 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.27
    PF13371.1   6 lreedferALavverllll.........aPd.....dpyerRDrGlllaqlgclaaAaedLeaflel 58 
                     +++++A a+ver l l         + +      ++ +R  Gl ++ + +l++  e++++ lel
  MMETSP0890-20130614|25605_1 254 TYTKRYQEAQAAVERALTLlqkieasssS-HvsskcLAEIWRYVGLFRHLTHELSESDEAYRRSLEL 319
                  55688899999999988884444444320.1333334455555555555555555555555555555 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0039
    PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaeliraqln 73 
                  +++ r   + +l+  g+   A ++L ++l+ +p+ +d+++ raql+
  MMETSP0890-20130614|25605_1 326 RAETRVKLAGVLVDSGEADKAEAELVQALKEDPESSDVYMHRAQLH 371
                  56667777899999******************************96 PP

  == domain 5    score: 9.4 bits;  conditional E-value: 0.00071
    PF13371.1  16 avverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdae 66 
                  a +   l  +P++   +  r+ l++ + +l+ A +dLe +++ +pd+  a+
  MMETSP0890-20130614|25605_1 348 AELVQALKEDPESSDVYMHRAQLHVIRRDLQSAQADLEKCIKAAPDHVLAR 398
                  5555556668999999999**************************986655 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.1
    PF13371.1   4 iylreedferALavverllllaPddpyerRDrGlllaql 42 
                  i+l +++ e A++  +  ++l++  p  ++  G++l ql
  MMETSP0890-20130614|25605_1 439 IALANNEIETAIQHFDKAIALDSTNPVPLYNKGMALIQL 477
                  899999******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       790  (0.0577823); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:01.13
# Mc/sec: 1196.08
//
Query:       MMETSP0890-20130614|25614_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1502.80
//
Query:       MMETSP0890-20130614|25638_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-17   62.0   0.0    7.3e-17   61.4   0.0    1.2  1  PF03556.10 Cullin binding


Domain annotation for each model (and alignments):
>> PF03556.10  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   5.3e-21   7.3e-17       4     114 ..      92     203 ..      87     206 .. 0.87

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 5.3e-21
   PF03556.10   4 lkkkleeleeelksdeekfkklYeftFkfakeeeqksldletaielwklllkskveklldqwieFleek..ekkaiskDtWellleFvkeik.edlskYdeeaAWPsliDefve 114
                  l++ +++l+ +   d+++f+++++f+F f++e ++++l+ ++   l+ + + ++ +++   ++eFle++  ++ +++ D+W  +leF+ +++ +d+s Y+ ++AWP+l+D++v+
  MMETSP0890-20130614|25638_1  92 LEALIPNLDPKDL-DKRNFRDFFKFVFLFSREGTHRTLEKDIVRVLLPIAICDR-SEHTVPFLEFLESSqpDNLRLTLDQWCSFLEFSYKVSsTDFSGYEPDGAWPLLLDDYVD 203
                  5555555555544.899*********************************9998.778889*****9885566779***************65*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 796.33
//
Query:       MMETSP0890-20130614|25641_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-19   67.2   0.2    7.8e-19   66.8   0.1    1.1  1  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1   5.7e-23   7.8e-19       5      67 ..      11      82 ..       7      83 .. 0.95

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 5.7e-23
                 HHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE...........EE.EEEEEGGGEEEEE CS
   PF01423.17  5 elinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknk.........relgqiliRGenivlvs 67
                 ++in+r++v   + r+++Gt +afDk+mNlvL d++e++k + k+          r lg++l+RGen+v++s
  MMETSP0890-20130614|25641_1 11 NFINYRMRVTIADSRTLVGTFLAFDKYMNLVLADCEEYRKIRHKKGavseereekRTLGLVLLRGENVVSLS 82
                 789*************************************999999***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 689.41
//
Query:       MMETSP0890-20130614|25646_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   46.5   0.0      2e-12   46.3   0.0    1.0  1  PF00355.21 Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.4e-16     2e-12       2      72 ..      19      88 .]      18      88 .] 0.85

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.4e-16
                 EEEEEEGGGSCCTCEEEEEEG.GSEEEEEECTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEE CS
   PF00355.21  2 wlevareeeipepgdgkttkl.gedlvvvrdkdgeivalnniCtHrgcplsegkaggekggvleCpcHgway 72
                 w++va+++ + +  + +++++ g+d  ++++kd+e++ + ++C+Hr +pls+g+  ++ +g+leCp+Hg  +
  MMETSP0890-20130614|25646_1 19 WIPVATKSGFGKRSGPQKVEIcGQDFALWSSKDEEFHLVADVCPHRLAPLSQGR--VDISGNLECPYHGMSF 88
                 999999999999666666677699999999***********************3..444677*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 319.51
//
Query:       MMETSP0890-20130614|25663_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-31  107.7   0.0    9.8e-31  107.2   0.0    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
    1.9e-16   59.6   0.0    1.9e-14   53.0   0.0    2.8  2  PF03069.10 Acetamidase/Formamidase family
     0.0014   18.9   0.0        1.1    9.7   0.0    2.7  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
     0.0034   17.1   0.0      0.012   15.4   0.0    1.8  2  PF14193.1  Domain of unknown function (DUF4315)


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   2.9e-34   9.8e-31      28     257 ..      13     294 ..       3     295 .. 0.76

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 2.9e-34
                  HHHHHHHH---EEEE---S----TTT------......--....--------SSB.....................S--TT.....-SSGGG----....--SB-S-TTSSS----EEEEEEE---.....----EEEB---HHHHHHHHHHHHHHTTEEEEEE----SS-..................--EEEEEESEEE-....---EEEE---TT.....TB...-S---S-HH....HHHHHHHHST...TT-EEE------EEEE-TTT-BB----------S-EEE-E CS
   PF02668.11  28 elrealaehgvvlfrglplspeqfeelarrfg......pleqsprntfygetwdv.....................rsvka....nvkdaaytpedttralplHtDlsylesppgvqlLhclenpa.....eGGetlfvdgfaaynaLspelkellaegltyvysndgery.....e...........eespekrhPlvrth....pvtgekvlyvnp.latkiqglvtlaeseell....kaledhltdp...eftyrhkwqeGdlvifdNrrvlHgrtafddetgeRhllra 257
                  + +e  +++gv++++gl+lsp ++e+l +++g      pl+++  +                               ++++    +   +a++ ++t++   +HtD+s+l sp + ++L++  n +     eGGet f+++++ ++ Lspel++  + +  +v+s + +++     +           +++p +++Plvr          +++ly np  ++++    +++++ +++    k++ d+l +      +y+hkw++Gd+vi++N  +lH++ +fd+ +++R l+r+
  MMETSP0890-20130614|25663_1  13 DAMESENGQGVLVIKGLDLSPNELEQLLHKIGkamnadPLKYDRWP--------GqsknieecpylallgnyvarkDNDLGvkckKGQGIAEFKPATNKISEWHTDGSFLASPKQAIALYAPYNIKdalplEGGETRFASCVRGLRLLSPELRAKAC-KTSAVHSWETFMRflearDpsrpkvtaedvAKKPDQTWPLVRNCtttaGGISQECLYLNPkNTKRLI---YKDNENAIPteipKDFIDELAQYvldSGVYAHKWEAGDFVIWNNSKLLHAASPFDHTKYQRLLFRC 294
                  455566899*****************99999833333344444443........34455566689999999988773333342223355555555588999*********************888889999*************************9.66677777777766657615566677889999********997766644477899999994444433...2222222224455999998877789999*************************************9 PP

>> PF03069.10  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0082        28      68     156 ..     377     466 ..     372     473 .. 0.69
   2 !   53.0   0.0   5.5e-18   1.9e-14     203     267 ..     476     541 ..     471     633 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0082
   PF03069.10  68 helsGpieVegakpg.DllvveildvgpieaeeGytgvfakenGgGvltdk.....vekaakaiwefegkyavsrqvpgvrfpglthvGvigvap 156
                  h l+Gpi ++ a p    l+++ild   i+ +  ++  f     gG l+ +     ++ +  +++e  + +a      gv   ++++ Gv+gvap
  MMETSP0890-20130614|25663_1 377 HILTGPIAIQRADPSrHCLQIDILD---IKLRSDWSWTFSPSRTGGALGTQangieFDVPRHTRLEPGAGWAKP-SWGGV-LDIAPFFGVLGVAP 466
                  889*********996379*******...8888888888888888888887734444444555555555444443.34443.45556666666666 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 5.5e-18
   PF03069.10 203 TippR.engGnlDiknlsrgskvylPVfveGallsiGDlHfsqGDGEvsfcaievsgevtvkvevi 267
                   ipp    gGnlD k l+ gs+ ylP++ +  ll+iGD H+ qGDGE +++a e + + t ++ +i
  MMETSP0890-20130614|25663_1 476 SIPPSeVYGGNLDLKMLTAGSTLYLPIHSDKVLLYIGDGHARQGDGECCGTALETALQGTFRLSLI 541
                  57777357**********************************************987777766665 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0038        13      13      47 ..     106     143 ..      86     175 .. 0.81
   2 !    9.7   0.0   0.00032       1.1      30      93 ..     217     290 ..     213     296 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0038
    PF13640.1  13 spHvDnse..sssrrltlllylndpew.eeeGGelely 47 
                  ++H+D+s   s++++++l+  +n ++  + eGGe++++
  MMETSP0890-20130614|25663_1 106 EWHTDGSFlaSPKQAIALYAPYNIKDAlPLEGGETRFA 143
                  4*****889777777777777**9999*********98 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00032
    PF13640.1  30 lylndpeweeeGGelelypsdr..........segvakevedeevv...pkpgrlvlFksdrslHrvtpv.gaqgrrl 93 
                  lyln+++      +l + ++++           ++ a+ v d  v+    ++g++v+++++++lH+++p  +++  rl
  MMETSP0890-20130614|25663_1 217 LYLNPKN----TKRLIYKDNENaipteipkdfIDELAQYVLDSGVYahkWEAGDFVIWNNSKLLHAASPFdHTKYQRL 290
                  5777444....334444433324666666666556666666666556689********************76666665 PP

>> PF14193.1  Domain of unknown function (DUF4315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.5e-06     0.012      32      69 ..      15      52 ..       7      66 .. 0.79
   2 ?   -2.5   0.0       1.3   4.6e+03      42      55 ..     145     158 ..     143     191 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.5e-06
    PF14193.1 32 tEaENleIvqiVRsldmspeeLaallkalkesgqeapk 69
                  E EN + v ++ +ld+sp+eL++ll+++ +++++ p 
  MMETSP0890-20130614|25663_1 15 MESENGQGVLVIKGLDLSPNELEQLLHKIGKAMNADPL 52
                 69************************998666666665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.3
    PF14193.1  42 iVRsldmspeeLaa 55 
                   VR+l++  +eL+a
  MMETSP0890-20130614|25663_1 145 CVRGLRLLSPELRA 158
                  58999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.42s 00:00:01.39 Elapsed: 00:00:01.30
# Mc/sec: 1177.90
//
Query:       MMETSP0890-20130614|25693_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       135  (0.0098742); expected 273.4 (0.02)
Passed bias filter:                       74  (0.00541252); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.59
# Mc/sec: 686.41
//
Query:       MMETSP0890-20130614|25690_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-11   41.8   0.0    8.5e-11   41.5   0.0    1.1  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   6.2e-15   8.5e-11      87     200 ..       8     122 ..       1     123 [. 0.92

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 6.2e-15
                  STTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
   PF00149.23  87 lkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeHv 200
                    e                                   +++ ++ +  +++e+f+alpl+a  + ki+++Hg+lss+++  +d+                                   g+g  fgpd++  +l+ +++ lv+r+He +
  MMETSP0890-20130614|25690_1   8 EGE----------------------------------IKHKFDNTVLTLFHECFCALPLAACLESKIFIVHGGLSSDDDVRLDDvrkinrameppdsglmcdllwsdpqampgrspskrGVGLSFGPDVTQRFLQLNDLSLVVRSHEVR 122
                  444..................................44788899999**************************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      147  (0.0107519); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.82
# Mc/sec: 546.49
//
Query:       MMETSP0890-20130614|25711_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-09   36.4   7.7     0.0004   20.8   0.4    3.9  4  PF08238.7  Sel1 repeat
     0.0027   17.9   3.3       0.24   11.8   0.1    3.0  2  PF13174.1  Tetratricopeptide repeat
      0.007   16.3   2.2        7.8    6.8   0.0    4.0  4  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.13   11.6   0.6         21    4.6   0.1    2.8  2  PF02954.14 Bacterial regulatory protein, Fis family
       0.52   10.9  10.7       0.15   12.6   3.4    2.8  4  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.058   1.6e+02       2      36 ..      53      85 ..      52      88 .. 0.71
   2 !   13.2   1.1   3.4e-05     0.093       2      38 ..      90     123 ..      89     124 .. 0.87
   3 !   20.8   0.4   1.5e-07    0.0004       1      38 [.     126     160 ..     126     161 .. 0.90
   4 ?   -0.5   0.0      0.74     2e+03      15      31 ..     174     189 ..     167     213 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.058
    PF08238.7  2 eAqynLGlyymylnGlgGvpkd...pekAleWyekAAe 36
                 +A y LG  y   +++ G++     p ++  ++ekA +
  MMETSP0890-20130614|25711_1 53 QALYVLG--Y---TRIYGCKNScrrPIEGCSLLEKATR 85
                 799****..9...8885555425568888888888865 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.4e-05
    PF08238.7   2 eAqynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38 
                  eA y+LG   +  +G    ++d +kA + ++ AA+qG
  MMETSP0890-20130614|25711_1  90 EALYELG--VATRDGN-SGKADAAKAARIFRVAAAQG 123
                  79*****..6558998.4588***************9 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 1.5e-07
    PF08238.7   1 aeAqynLGlyymylnGlgGvpkdpekAleWyekAAeqG 38 
                  a+A y+LG  ++yl G  Gv+kd  +A +++ + A+ +
  MMETSP0890-20130614|25711_1 126 AKALYELG--LAYLQGH-GVDKDTTEAARLLDLGAREN 160
                  68******..999***8.9***********99988765 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.74
    PF08238.7  15 nGlgGvpkdpekAleWy 31 
                  +G + + +d +kA +++
  MMETSP0890-20130614|25711_1 174 DGND-LAQDRVKAAQLL 189
                  5653.666777776654 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.3    0.0077        21       1      24 [.      90     117 ..      90     122 .. 0.73
   2 !   11.8   0.1     9e-05      0.24       2      23 ..     128     153 ..     127     155 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0077
                  HHHHHHHHHHHHH....HHHHHHHHHHH CS
    PF13174.1   1 dAlyklalsyykl....gdtdeAleale 24 
                  +Aly l+ + + +     d+++A ++++
  MMETSP0890-20130614|25711_1  90 EALYELGVATRDGnsgkADAAKAARIFR 117
                  79*******9997785445556666666 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 9e-05
                  HHHHHHHHHHHH....HHHHHHHHHH CS
    PF13174.1   2 Alyklalsyykl....gdtdeAleal 23 
                  Aly l+l+y+++    +dt+eA ++l
  MMETSP0890-20130614|25711_1 128 ALYELGLAYLQGhgvdKDTTEAARLL 153
                  9**********99**99*****9988 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.069   1.9e+02       6      22 ..      44      61 ..      40      68 .. 0.86
   2 ?    3.9   0.1     0.024        67      12      33 ..      88     111 ..      80     112 .. 0.86
   3 !    6.8   0.0    0.0029       7.8      11      26 ..     124     139 ..     117     151 .. 0.72
   4 ?   -3.4   0.0         5   1.4e+04      19      29 ..     168     178 ..     166     182 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.069
    PF13431.1  6 leldPn.nadaynnLAel 22
                 ++l+P+ +++a++ L+++
  MMETSP0890-20130614|25711_1 44 VKLNPTsDVQALYVLGYT 61
                 689***56********87 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.024
    PF13431.1  12 nadaynnLAelll..nnGdleeAe 33 
                  n++a+++L+++    n G+ + A+
  MMETSP0890-20130614|25711_1  88 NYEALYELGVATRdgNSGKADAAK 111
                  89********98878888888886 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0029
    PF13431.1  11 nnadaynnLAelllnn 26 
                   na a+++L++++l  
  MMETSP0890-20130614|25711_1 124 GNAKALYELGLAYLQG 139
                  69***********943 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 5
    PF13431.1  19 LAelllnnGdl 29 
                  LA+l+ + +dl
  MMETSP0890-20130614|25711_1 168 LANLFIDGNDL 178
                  77777776665 PP

>> PF02954.14  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0078        21      22      33 ..     147     158 ..     145     159 .. 0.88
   2 ?    4.5   0.0    0.0081        22      21      31 ..     182     192 ..     179     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0078
                  HHHHHH----HH CS
   PF02954.14  22 srAArlLGisRr 33 
                  ++AArlL+++ r
  MMETSP0890-20130614|25711_1 147 TEAARLLDLGAR 158
                  79******9876 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0081
                  HHHHHHH---- CS
   PF02954.14  21 isrAArlLGis 31 
                  + +AA+lLG++
  MMETSP0890-20130614|25711_1 182 RVKAAQLLGLH 192
                  679******96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.7   1.3e+04      30      39 ..      51      60 ..      40      61 .. 0.73
   2 ?    0.3   0.0      0.39   1.1e+03      29      40 ..      87      98 ..      79     107 .. 0.81
   3 ?   12.6   3.4   5.5e-05      0.15      12      57 ..     108     156 ..     104     163 .. 0.82
   4 ?   -3.0   0.0       4.4   1.2e+04      12      14 ..     177     179 ..     165     190 .. 0.53

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.7
    PF13432.1 30 aaeallllae 39
                 +++al+ l+ 
  MMETSP0890-20130614|25711_1 51 DVQALYVLGY 60
                 7889998885 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.39
    PF13432.1 29 eaaeallllaea 40
                 +++eal++l++a
  MMETSP0890-20130614|25711_1 87 GNYEALYELGVA 98
                 689999999986 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 5.5e-05
    PF13432.1  12 dydeAlaaleaalalaPeaaeallllaeallrl....grldeAaallraa 57 
                  d ++A++++ ++ a++ ++a al++l+ a+l+     ++  eAa+ll+  
  MMETSP0890-20130614|25711_1 108 DAAKAARIF-RVAAAQGGNAKALYELGLAYLQGhgvdKDTTEAARLLDLG 156
                  567788888.77777789**************999999999999888765 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 4.4
    PF13432.1  12 dyd 14 
                  d++
  MMETSP0890-20130614|25711_1 177 DLA 179
                  332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 850.88
//
Query:       MMETSP0890-20130614|25723_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-16   58.4   0.0    5.3e-16   58.3   0.0    1.0  1  PF00378.15 Enoyl-CoA hydratase/isomerase family


Domain annotation for each model (and alignments):
>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   3.9e-20   5.3e-16     107     168 ..       2      65 ..       1      66 [] 0.96

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 3.9e-20
                  HHHHHSSEEEEETT-E..E--CCCC-----------HHHHH---HHHHHHHH----EEHHHHHH CS
   PF00378.15 107 elalacdyriaadeak..fglpevklGilpgaggtqrlprlvGvsaAlemiltgrriradeAlk 168
                  e al cd ria+ + k  +glpevklG+lpg ggt  lprl+Gv  Al +il g ++r d+A++
  MMETSP0890-20130614|25723_1   2 EWALKCDARIATSSTKtkLGLPEVKLGLLPGWGGTYALPRLIGVLDALPLILQGSEVRSDKAKR 65 
                  679*********999888********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        76  (0.00555881); expected 273.4 (0.02)
Passed bias filter:                       75  (0.00548566); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 259.28
//
Query:       MMETSP0890-20130614|25727_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-15   55.4   0.2    6.8e-15   54.3   0.1    1.6  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      3e-11   43.0   0.1    9.3e-11   41.4   0.0    1.9  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.3e-08   34.4   0.1    2.4e-08   33.5   0.1    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.4e-06   28.4   0.2    4.4e-06   26.8   0.0    1.9  2  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1     2e-18   6.8e-15       1      70 []     162     232 ..     162     232 .. 0.97

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 2e-18
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  lfV  L++ + +++L+ +Fs fG+i+s+++vrd +tg s +faf+ Fese +  +A +++n+  ++++++k
  MMETSP0890-20130614|25727_1 162 LFVAKLNKVTEDRDLEIIFSRFGKIKSCNIVRDwKTGDSLNFAFISFESEAACVEAYKKMNNVLVDDSRIK 232
                  8*************************************************************999999885 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   2.7e-14   9.3e-11       1      69 []     162     232 ..     162     232 .. 0.94

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 2.7e-14
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                  l+v +l++ + + dl  +fs++gk++++ i+r+ + g + +fAf+ fese+++ +a+kk+n + ++ + i+
  MMETSP0890-20130614|25727_1 162 LFVAKLNKVTEDRDLEIIFSRFGKIKSCNIVRDWKtGDSLNFAFISFESEAACVEAYKKMNnVLVDDSRIK 232
                  7999*****************************555***********************998999999886 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   7.1e-12   2.4e-08       4      56 .]     179     236 ..     179     236 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 7.1e-12
    PF13893.1   4 lfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  +fs+fGk++++ i r+       ++Af+ f++++a   a++++n+v+ ++ ++kv++s
  MMETSP0890-20130614|25727_1 179 IFSRFGKIKSCNIVRDWktgdsLNFAFISFESEAACVEAYKKMNNVLVDDSRIKVDFS 236
                  7************9988998855*********************************98 PP

>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   4.4e-06     100     152 ..      13      70 ..       2      73 .. 0.80
   2 ?   -2.4   0.2       1.2   4.2e+03      85      85 ..     346     346 ..     293     388 .. 0.58

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.3e-09
   PF00160.16 100 sngsqFfItlgdap..hlDg.kytvFGkVvegmdvvekieavetde..kpeknvkiks 152
                    gsqF +tl+  +  hlD+ +++v+G+V eg++++e++++   de  +p ++v+ + 
  MMETSP0890-20130614|25727_1  13 VYGSQFIFTLRGDDleHLDQgGHCVIGEVAEGIEILEAMNTLYLDEngRPWQDVRLIA 70 
                  469*******987788***6378*****************966666669999887665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.2
   PF00160.16  85 k 85 
                  +
  MMETSP0890-20130614|25727_1 346 Q 346
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1154  (0.0844061); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.77
# Mc/sec: 1266.65
//
Query:       MMETSP0890-20130614|25779_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-68  226.0   0.0    2.6e-34  117.5   0.0    2.1  2  PF01678.14 Diaminopimelate epimerase


Domain annotation for each model (and alignments):
>> PF01678.14  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   4.1e-35   5.6e-31       1     119 [.      26     150 ..      26     152 .. 0.96
   2 !  117.5   0.0   1.9e-38   2.6e-34       2     121 .]     182     300 ..     181     300 .. 0.97

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 4.1e-35
                  -EEEE--EE-EEEES-TTTS-TTT.HHHHHCCCTSTTSTT--EEEEEE..CCCTTCEEEEEEE----EES-----HHHHHHHHHH----.....--SEEEEE-----EEEEE-TTS-.EEEEE---E CS
   PF01678.14   1 fakshGnpndvvvvddveeellle.pelvpalcdreagpgadnvlfve..asgeediklrvfnrdgseteaCGnGvrvfaaalregglv.....tkkevrvetlgGeleievkddgekvkvmmGkav 119
                  f+k++G +nd++++dd+ ++++   +  +++lcdr+ g+g+d+v+fv   +++e+d+k+r++n+d+se e+CGnG+r++a++l+e +++     + + +++et +G ++ ev d++  v+v+mG+++
  MMETSP0890-20130614|25779_1  26 FSKYQGIGNDFILIDDRGHKEPRIsAVEAKKLCDRNYGIGGDGVIFVLdaEQKENDYKMRIYNSDSSEPEMCGNGIRCMARFLKELNIDgipttNGEAFKIETGAGVMVPEVFDNE--VTVDMGEPE 150
                  79*****************998887999********************999************************************9999998999******************8..7******97 PP

  == domain 2    score: 117.5 bits;  conditional E-value: 1.9e-38
                  EEEE--EE-EEEES-TTTS-TTTHHHHHCCCTSTTSTT--EEEEEE.CCCTTCEEEEEEE----EES-----.HHHHHHHHHH------SEEEEE-----EEEEE-TTS-.EEEEE---EEE CS
   PF01678.14   2 akshGnpndvvvvddveeelllepelvpalcdreagpgadnvlfve.asgeediklrvfnrdgseteaCGnG.vrvfaaalregglvtkkevrvetlgGeleievkddgekvkvmmGkavlv 121
                  ++s+Gnp++v++v+d++e +l    ++p+ ++++++p+++n +fv+ ++++++++++v++r+++ t aCG+G ++v++a ++ g++++ ++++v+++gG+l ie+++d+++  +m G+a +v
  MMETSP0890-20130614|25779_1 182 CVSMGNPHAVIFVPDLDEIDLPH--IGPQCEHHPTFPQRVNTEFVQePNTPNELTMKVWERGAGATLACGTGaCAVAVAGILTGRTDRANPCTVHLPGGDLRIEWRQDDNR-LYMSGPAAFV 300
                  79***************999888..*********************99*************************************************************95.******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 1242.86
//
Query:       MMETSP0890-20130614|25784_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.077   13.0   5.1      0.082   12.9   3.6    1.1  1  PF11338.3  Protein of unknown function (DUF3140)
       0.27   11.2   8.0       0.27   11.2   5.5    1.1  1  PF03247.9  Prothymosin/parathymosin family
        1.3    7.9   4.0        1.3    8.0   2.8    1.1  1  PF01056.13 Myc amino-terminal region
        7.4    4.6   9.4        7.7    4.6   6.5    1.2  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
        7.4    5.9   9.1        7.9    5.8   6.3    1.1  1  PF09184.6  PPP4R2
          8    6.1  12.4        8.2    6.0   8.6    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        8.9    5.8  10.5        9.9    5.6   7.3    1.1  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PF11338.3  Protein of unknown function (DUF3140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.6   4.2e-05     0.082      24      62 ..       3      41 ..       1      53 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.2e-05
    PF11338.3 24 svgekkdggesvghesGrriveilekrksdltdddvehM 62
                 +v++++d++++  ++    +v i +k+++dl+ddd +h 
  MMETSP0890-20130614|25784_1  3 KVTKNDDDDDDDDDQHHHDVVVIMKKKNADLDDDDDDHH 41
                 577888888888899999999999999999999998874 PP

>> PF03247.9  Prothymosin/parathymosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.5   0.00014      0.27      64     103 ..       7      49 ..       1      52 [. 0.61

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    PF03247.9  64 eegegeeeeeeeeeeeegatvkraae...deedkaetKkQktd 103
                  +++++++++++   +   + +k+ a+   d++d+ +  +Qk +
  MMETSP0890-20130614|25784_1   7 NDDDDDDDDDQHHHDVVVIMKKKNADlddDDDDHHDVLRQKLQ 49 
                  2333333333334456667889999998667777788888865 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.8   0.00065       1.3     229     259 ..       5      35 ..       1      53 [. 0.73

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00065
   PF01056.13 229 eeeeeeeeeeeeeeeiDvvtvekrrsssrek 259
                  +++++++++++++   Dvv + k++++   +
  MMETSP0890-20130614|25784_1   5 TKNDDDDDDDDDQHHHDVVVIMKKKNADLDD 35 
                  5678888899999999***999977765444 PP

>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.5    0.0039       7.7     358     386 ..       7      35 ..       1      48 [. 0.58

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0039
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF05793.7 358 deedsddsDideedsvslvkakKkkekkk 386
                  +++d+dd+D+++++ v+++++kK+ +  +
  MMETSP0890-20130614|25784_1   7 NDDDDDDDDDQHHHDVVVIMKKKNADLDD 35 
                  34444444444555666677777665333 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.3     0.004       7.9     247     278 ..       6      41 ..       1      51 [. 0.37

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.004
    PF09184.6 247 nkkaddeedddedsd....yieekelkedeeedete 278
                  ++++dd++ddd++      ++++k+++ d+++d+  
  MMETSP0890-20130614|25784_1   6 KNDDDDDDDDDQHHHdvvvIMKKKNADLDDDDDDHH 41 
                  333333333333222233323333333333333322 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.6    0.0042       8.2     271     298 ..       8      42 ..       1      53 [. 0.61

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0042
                  XXXXXXXXXXXXXX..........-------------- CS
    PF03153.8 271 deeadedeeekdkv..........ieeDlddseDDvse 298
                  d+++d+   ++d++           + Dldd++DD  +
  MMETSP0890-20130614|25784_1   8 DDDDDD---DDDQHhhdvvvimkkKNADLDDDDDDHHD 42 
                  121222...222223456799**9999**999998644 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.3    0.0051       9.9     119     157 ..       7      50 ..       1      53 [. 0.49

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0051
    PF04889.7 119 eidaddsdkseee......sdesdddsdddddeDetaeLlrELek 157
                  + d+dd+d+++++       ++++ d d ddd+D    L + L++
  MMETSP0890-20130614|25784_1   7 NDDDDDDDDDQHHhdvvviMKKKNADLD-DDDDDHHDVLRQKLQQ 50 
                  2222222222222457876444444444.5666666667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 227.02
//
Query:       MMETSP0890-20130614|25804_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   12.8   0.7        1.4    8.8   0.0    2.1  2  PF11676.3 Protein of unknown function (DUF3272)


Domain annotation for each model (and alignments):
>> PF11676.3  Protein of unknown function (DUF3272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0001       1.4      16      39 ..      34      57 ..      27      64 .. 0.83
   2 ?    2.9   0.4    0.0073     1e+02      17      43 ..      59      85 ..      56      87 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0001
    PF11676.3 16 tyffnesllsgsyllAafwgfLll 39
                  y  n+sl +g++llA+  g+L +
  MMETSP0890-20130614|25804_1 34 KYPANASLVDGEFLLALPIGVLTF 57
                 5778************99998876 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0073
    PF11676.3 17 yffnesllsgsyllAafwgfLllRnlr 43
                 yf + s +   y+lA f  + + R+l 
  MMETSP0890-20130614|25804_1 59 YFRSTSSQWIAYVLAYFGTLQICRRLE 85
                 77788888899****998888999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 341.78
//
Query:       MMETSP0890-20130614|25810_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.077   12.6   0.0        0.1   12.2   0.0    1.2  1  PF02866.13 lactate/malate dehydrogenase, alpha/beta C-terminal domain


Domain annotation for each model (and alignments):
>> PF02866.13  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.5e-06       0.1      88     166 ..      26     104 ..      18     112 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.5e-06
                  HHHHHHHHHHHHHHHHHH---EEEEEEEEEEEE-SSS....SSEEEEEEEE-----EEE-------HHHHHHHHHHHHHHHHH CS
   PF02866.13  88 lsmAvAgakfvkallrdteevlsagvyedgevglkdq....ieyfsvPvvlgknGvekvleilkLndferekleksakeLkke 166
                  l +A  g + v+ +l ++ee l  +v++  +++++dq     +y+ +P++ g +G e+  +    nd+  ++l+++   Lk++
  MMETSP0890-20130614|25810_1  26 LEIAAGGSESVSRILANFEEQLL-DVVKVPKNPTTDQdstqSIYLVYPITKGIHGNEEECK---QNDDLHSELQNMTTALKES 104
                  67899999**********99965.555555556666668899********99999888766...6888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      492  (0.035986); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 504.69
//
Query:       MMETSP0890-20130614|25815_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-61  207.7   0.0    1.8e-61  207.4   0.0    1.1  1  PF00069.20 Protein kinase domain
    4.2e-40  137.3   0.0    5.7e-40  136.9   0.0    1.1  1  PF07714.12 Protein tyrosine kinase
      9e-20   70.7   0.0    2.2e-11   43.8   0.0    2.6  2  PF00786.23 P21-Rho-binding domain
     0.0085   14.8   0.0      0.013   14.2   0.0    1.2  1  PF07387.6  Seadornavirus VP7
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.19   11.3   0.0    1.4  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.0   6.7e-65   1.8e-61       3     260 .]     184     437 ..     182     437 .. 0.95

  Alignments for each domain:
  == domain 1    score: 207.4 bits;  conditional E-value: 6.7e-65
                  EEEEEE----EEEEEEEETTCCE.....EEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB.-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   3 lleklGsGsfGkVykakkkktgk.....kvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegkl.seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                    ++lG+G++G Vy+a++  +g+     +vA+K  + +e ++ k+     E+++  + +Hpn+v++le+f ++++++++le+++gg l +l  +++++ +e +i  +++  l++l+++H+++ iHrD+K++NiL+d +g++k+aDFG+a  l++s  k +++vgt+ +mAPE+++ ++ y+ kvD+WslG++ +e++ g++p+ +e   ++l li  +  +kl+  +++s    e+++++++k+l kdpa+R++a+++l hp+l
  MMETSP0890-20130614|25815_1 184 EFHQLGQGASGIVYSAIDDRKGTerygqRVALKYCDLKELDELKT-----EIAMQSMSNHPNVVNFLEAFLTERHCVICLEFMDGGMLTNLCDTKRRIcDESQIAYVIKCSLQALSFMHRQHRIHRDIKSDNILVDFSGRVKLADFGFATALTRSTMKRQSVVGTPFWMAPELIK-SQSYDCKVDIWSLGITAIEMAQGEPPLMHEPVMRALFLITVNEAPKLNDRSSWS----ESFNHFLSKMLVKDPASRSSADQLLLHPFL 437
                  6689*************998887778889*********9999886.....9*****9********************************9999665555****************************************************9***********************.******************************999999999999999999888877....89**************************96 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.0   2.1e-43   5.7e-40       5     255 ..     186     431 ..     182     434 .. 0.90

  Alignments for each domain:
  == domain 1    score: 136.9 bits;  conditional E-value: 2.1e-43
                  EEE-------EEEEEEET.TTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH..HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
   PF07714.12   5 kklGeGafGkVvegtlkg.ekekkevkVavKtlkesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell..kegkrlekpekcpeelyelmkqCweeepeeRptfkel 255
                  ++lG+Ga G V++++ ++  +e+  ++Va+K +    + +e +e+ +e+++ +  +hpn+v++l ++++e++++i +e+++gG L ++  +k ++ ++ +++  ++    ++++++++++ +Hrd+ + N+L++ +  vk++DfG a  +  + ++ k+++      WmapE++k++++  k D+Ws G++  E+++ ge p  +   +++l l+  +e  +l+  ++++e++++++++ + ++p++R + ++l
  MMETSP0890-20130614|25815_1 186 HQLGQGASGIVYSAIDDRkGTERYGQRVALKYC----DLKELDELKTEIAMQSMSNHPNVVNFLEAFLTERHCVICLEFMDGGMLTNLCDTK-RRICDESQIAYVIKCSLQALSFMHRQHRIHRDIKSDNILVDFSGRVKLADFGFATAL--TRSTMKRQSVVGTPFWMAPELIKSQSYDCKVDIWSLGITAIEMAQ-GEPPLMHEPVMRALFLItvNEAPKLNDRSSWSESFNHFLSKMLVKDPASRSSADQL 431
                  68*************998667778899*****9....5666789*****999999********************************99998.88888899999999999****************************************..566778888889999****************************99.999988775555544443399999**************************998887 PP

>> PF00786.23  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     1e-08   2.8e-05       6      53 ..       2      47 ..       2      53 .. 0.84
   2 !   43.8   0.0   8.2e-15   2.2e-11       2      58 ..      85     142 ..      84     143 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1e-08
                 EEEEEEEEEEEBTTTTBEE---HHHCCCH-XX.XXXXXXXXXXXXXXX CS
   PF00786.23  6 tdfkHvaHVGfdgqsgfftglppewkkllkssgissdeqkknpkavls 53
                 t fk v HV +d+++g f glp+ew+ +l++   + +e  +++k+   
  MMETSP0890-20130614|25815_1  2 TGFKKVLHVEWDAKAGAFRGLPKEWAAALPKG--TYKEVDSSSKSLAP 47
                 67999*************************99..77777777766655 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 8.2e-15
                  B---EEEEEEEEEEEBTTTTBEE..---HHHCCCH-XX.XXXXXXXXXXXXXXXXXXXX CS
   PF00786.23   2 IStPtdfkHvaHVGfdgqsgfft..glppewkkllkssgissdeqkknpkavlsvvkfr 58 
                  IS P+++ H +HV  d+++ +    glp  w++++k+sgis +e k np+a+l++++f 
  MMETSP0890-20130614|25815_1  85 ISLPYNVVHEMHVRPDSTTAT-GfsGLPIAWEEAMKGSGISPQEVKANPQAALDALQFA 142
                  9***************98863.135********************************96 PP

>> PF07387.6  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.6e-06     0.013     145     187 ..     284     324 ..     264     336 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.6e-06
    PF07387.6 145 niivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   +i   l++L  +h   ++ +h D++ +n++ D  G +kl D 
  MMETSP0890-20130614|25815_1 284 YVIKCSLQALSFMH--RQHRIHRDIKSDNILVDFSGRVKLADF 324
                  45777899******..6788********************995 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.9e-05      0.19     165     196 ..     298     328 ..     268     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.9e-05
                  --EEB-SS-SGGGEEEE.TTTTEEEE---TT-B CS
   PF01636.18 165 ppvllHgDlhpgNllvd.pddgrvgviDfedag 196
                  ++  +H+D++++N+lvd +  grv + Df++a+
  MMETSP0890-20130614|25815_1 298 RQHRIHRDIKSDNILVDfS--GRVKLADFGFAT 328
                  56679************44..455489999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.84
# Mc/sec: 1309.44
//
Query:       MMETSP0890-20130614|25837_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-41  139.5   0.5    9.5e-41  139.0   0.3    1.2  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
    3.4e-07   29.7   0.0    8.1e-07   28.5   0.0    1.6  1  PF07683.9  Cobalamin synthesis protein cobW C-terminal domain
     0.0071   16.6   0.3       0.45   10.7   0.0    2.4  2  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.018   14.6   0.0    1.3  1  PF01637.13 Archaeal ATPase
      0.012   14.6   0.0      0.022   13.7   0.0    1.5  1  PF06745.8  KaiC
      0.012   15.1   0.0      0.037   13.6   0.0    1.8  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.024   13.7   0.0      0.058   12.5   0.0    1.6  1  PF12846.2  AAA-like domain
      0.044   13.5   0.0      0.083   12.6   0.0    1.5  1  PF13173.1  AAA domain
      0.046   13.1   0.0      0.091   12.2   0.0    1.4  1  PF13604.1  AAA domain
       0.07   12.8   0.2       0.27   10.9   0.0    2.2  2  PF13671.1  AAA domain
      0.085   11.6   0.1        0.2   10.4   0.0    1.5  1  PF00437.15 Type II/IV secretion system protein
      0.089   12.6   0.1       0.29   11.0   0.0    1.9  1  PF01926.18 50S ribosome-binding GTPase
      0.089   11.4   0.1       0.31    9.6   0.0    1.8  2  PF03308.11 ArgK protein
      0.099   12.0   0.0       0.22   10.9   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
        0.1   11.6   0.1       0.48    9.4   0.0    2.0  2  PF09439.5  Signal recognition particle receptor beta subunit
       0.11   11.8   0.0       0.53    9.6   0.0    2.0  2  PF03029.12 Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.3   1.1e-43   9.5e-41       1     177 [.       5     186 ..       5     187 .. 0.89

  Alignments for each domain:
  == domain 1    score: 139.0 bits;  conditional E-value: 1.1e-43
                  EEEEEE-------HHHHHHHHC.HS---S-EEEEES-----.HCCCCCHHT-S-...EEEE----ECC-TTS-HHHHHCCCHHHCH-T-SEEEEE----SGGGGH..HHH.SHHHHHHEEE-EEEEEEETTTH...CHHHHHHHHHHHHHCT-SEEEEE-CCCTTTT..HHHHHHHHHHH-TTSEEE CS
   PF02492.14   1 pvtvltGflGsGKTtLleklle.knreglkiaVivndfget.kiDaellretgve..ivelnnGciCctlredllmelealeelkeerldvlliEttGlaepapl..tft.eeelksdlgldavvtvvdvknl...tegedkpekledqlaaAdlivlnKiDlldaeadlekleedlrklnpeakvl 177
                  pvt + GflGsGKTtLl++ ++ +++ glk+a i+n+f et + +a++l++ ++   ++e+ nGc+Cc ++++l++++eal++++  ++++++iE +G a+p  +   f+ +e+l+s+l ld++v++vd+++    +   +  +++ +qla Adl++l+K+Dl+++    e +++ + +lnp a+++
  MMETSP0890-20130614|25837_1   5 PVTLIAGFLGSGKTTLLNQCIAqNENIGLKVALITNEFAETgGLEAAMLSSGSTIpnVIEMRNGCLCCSVKDELVQTVEALVQTR--DIEAIIIELSGAANPGIVasRFWlDEALESRLVLDGIVCIVDATKStlsAPRAQGGDEARRQLALADLVILTKCDLVKQI---EPIRKLIFSLNPTARIV 186
                  799******************988889*************62689999987744356****************************..9*****************664558*******************888787666777899*******************998...45777777888887776 PP

>> PF07683.9  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   9.5e-10   8.1e-07      25      91 ..     278     346 ..     244     348 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 9.5e-10
    PF07683.9  25 p......egvlRaKGivwlagkpdalvlqgvggrlrlepagawwaaledgdrrseLVfIGrdldkealeeaLd 91 
                  +       +v+R+KG+++l+++ +   +q+v +++++++++ + +a    + +  LV+IG +ldk+ + ++++
  MMETSP0890-20130614|25837_1 278 HddpedaSTVFRVKGLLHLSSS-TFAIVQAVYDTFEITEEQ-PETA--ISNIDPFLVIIGIHLDKALISSKWQ 346
                  034444489***********99.7999***********444.4444..69****************9988776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00053      0.45      25      59 ..       6      35 ..       2     155 .. 0.87
   2 ?    4.0   0.0      0.06        51      50     103 ..     215     282 ..     208     336 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00053
    PF13191.1 25 lllvtGpsGiGKSsLlrelakpillerlrfaagkf 59
                 + l+ G  G+GK++Ll++     + ++ + ++ k+
  MMETSP0890-20130614|25837_1  6 VTLIAGFLGSGKTTLLNQ-----CIAQNENIGLKV 35
                 67999*************.....766666555555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.06
    PF13191.1  50 erlrfaagkfdqllrn.............lpysaiiqa.lrellrqlltelaaelggwreallaalga 103
                  ++ + ++g f q+++              +p s i+ + l ++l+qll e++++ ++++ ++ ++ ++
  MMETSP0890-20130614|25837_1 215 KNMLSTPGSFQQITAPhataftairleppTPQSTITRQqLNTFLAQLLWESQDTQRDATLPKTHDDPE 282
                  556666677777777777666666666777777777779***************99999999888777 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.018      21      53 ..       5      37 ..       2      50 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.1e-05
                 SEEEEE--TT---HHHHHHHHHH-..---HHHH CS
   PF01637.13 21 siiviyGprrsGKTaLlkeileelkekgkrvvy 53
                 ++++i G  +sGKT+Ll++ + + ++ g +v  
  MMETSP0890-20130614|25837_1  5 PVTLIAGFLGSGKTTLLNQCIAQNENIGLKVAL 37
                 789*******************99888776655 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.6e-05     0.022      20      72 ..       5      57 ..       1     114 [. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.6e-05
    PF06745.8 20 rvvlitGepGtGKtifalqFlikgaeeygepgvfvtveesa.edlrenakslgw 72
                  v+li+G  G+GKt++  q + +  e+ g ++ ++t e  +   l   + s g 
  MMETSP0890-20130614|25837_1  5 PVTLIAGFLGSGKTTLLNQCIAQN-ENIGLKVALITNEFAEtGGLEAAMLSSGS 57
                 689****************99998.889********997773445555556555 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.3e-05     0.037       1      34 [.       5      38 ..       5      44 .. 0.91
   2 ?   -3.3   0.0       6.9   5.9e+03      47      67 ..     143     164 ..     134     172 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-05
                 -EEEEE-------HHHHHHHHHHHHH-------E CS
    PF03205.9  1 pivavvGpkdsGKTtlieklvnklkergyrvavv 34
                 p+ ++ G+ +sGKTtl+ + + +  + g++va++
  MMETSP0890-20130614|25837_1  5 PVTLIAGFLGSGKTTLLNQCIAQNENIGLKVALI 38
                 67899*******************9999999976 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6.9
                  ---TTHHH.H----EEEEE-SS CS
    PF03205.9  47 pGkDtwrl.kagadlvlvsiee 67 
                  +G D  r   a adlv++++ +
  MMETSP0890-20130614|25837_1 143 QGGDEARRqLALADLVILTKCD 164
                  5666666667777777776655 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.8e-05     0.058       2      29 ..       5      32 ..       5      47 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.8e-05
    PF12846.2  2 pntlilGppGsGKSvllkklvlqllarg 29
                 p tli G +GsGK++ll+ ++ q+   g
  MMETSP0890-20130614|25837_1  5 PVTLIAGFLGSGKTTLLNQCIAQNENIG 32
                 5799****************99876655 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.7e-05     0.083       3      31 ..       5      31 ..       3      61 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.7e-05
    PF13173.1  3 kilvitGpRrvGKttllkqlakellkees 31
                 ++++i G  ++GKttll+q + ++   + 
  MMETSP0890-20130614|25837_1  5 PVTLIAGFLGSGKTTLLNQCIAQNE--NI 31
                 5889*****************9887..44 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011     0.091      20      77 ..       6      63 ..       2      69 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
    PF13604.1 20 vavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeeelgiearTiasll 77
                 v ++ G  G+GKtt+l+++ +  e+ g +v +++ + + +  Le ++   ++Ti +++
  MMETSP0890-20130614|25837_1  6 VTLIAGFLGSGKTTLLNQCIAQNENIGLKVALITNEFAETGGLEAAMLSSGSTIPNVI 63
                 78899******************************99999999999988888887665 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00032      0.27       1      26 [.       6      31 ..       6     165 .. 0.89
   2 ?   -1.1   0.0       1.6   1.4e+03      51      81 ..     246     276 ..     214     293 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00032
    PF13671.1  1 lvllvGlpGsGKstlaerllkklgyv 26
                 ++l+ G  GsGK+tl+++ ++++  +
  MMETSP0890-20130614|25837_1  6 VTLIAGFLGSGKTTLLNQCIAQNENI 31
                 67889*************99888744 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.6
    PF13671.1  51 vlkrlyqilnklarkalsagrsvivdatnls 81 
                   ++ ++q+ln ++++ l + +++  dat+ +
  MMETSP0890-20130614|25837_1 246 QSTITRQQLNTFLAQLLWESQDTQRDATLPK 276
                  3445677777777777777777777777655 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023       0.2     132     154 ..       8      30 ..       3      43 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
   PF00437.15 132 lvsGgTgsGKttllnallaeink 154
                  l++G  gsGKttlln ++a+ ++
  MMETSP0890-20130614|25837_1   8 LIAGFLGSGKTTLLNQCIAQNEN 30 
                  99**************9987655 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034      0.29       3      89 ..       8     134 ..       6     175 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00034
                  EEE--TT---HHHHHHHHCSTCTE..........................................ETS-TT-SSSESEEEEETTE...EEEEE---SSSHHHHHHHHH..HHHHHHHHHCTSSEEEEEEETTS CS
   PF01926.18   3 aivGrpNvGKStLinaLtgekaak..........................................vsdypgtTrditenevkkek...iilvDtPGiiegasedkeie..gikkylekveradvlllvvdasa 89 
                   i G   +GK+tL+n+ + ++  +                                          v+d    T +      ++++    i++ + G +++   +   +   ++++le++  +d+++ +vda++
  MMETSP0890-20130614|25837_1   8 LIAGFLGSGKTTLLNQCIAQNENIglkvalitnefaetggleaamlssgstipnviemrngclccsVKDELVQTVEAL----VQTRdieAIIIELSGAANPGIVA---SrfWLDEALESRLVLDGIVCIVDATK 134
                  589999***********9765444233333344444444444444443333333333333333333222222222221....11113233667766644331111...12245667888888888888888544 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00037      0.31      34      64 ..       9      39 ..       3      47 .. 0.91
   2 ?   -1.3   0.0       0.8   6.8e+02     144     185 ..     134     171 ..     125     185 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00037
                 -B-------HHHHHH---HHHH----EEEEE CS
   PF03308.11 34 ltGvPGaGkstlveklikelrrrGkrvavla 64
                 + G+ G+Gk tl+++ i++  + G +va++ 
  MMETSP0890-20130614|25837_1  9 IAGFLGSGKTTLLNQCIAQNENIGLKVALIT 39
                 789*************************985 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.8
                  SS-EEEE---------------TTT-SEEEE----HHHHHHH CS
   PF03308.11 144 dtvvlvtlpgaGDelqaikaGlleiaDilvvnkaDkeeaeka 185
                    +++   +++GDe        l +aD++++ k D  +  + 
  MMETSP0890-20130614|25837_1 134 KSTLSAPRAQGGDEARR----QLALADLVILTKCDLVKQIEP 171
                  55555555566666433....367999999999996555444 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.22      25      40 ..       6      21 ..       1      26 [. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00026
    PF13555.1 25 ntlltGasGsGKSTll 40
                 +tl++G  GsGK+Tll
  MMETSP0890-20130614|25837_1  6 VTLIAGFLGSGKTTLL 21
                 79*************8 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00057      0.48       2      26 ..       3      27 ..       2      47 .. 0.79
   2 ?   -0.9   0.0      0.87   7.4e+02      57      86 ..     104     133 ..      79     138 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00057
                 ---EEEEE--TT---HHHHHHHHHS CS
    PF09439.5  2 skpavllvGlsdsGKTslftrLttd 26
                 + p  l++G   sGKT+l+++   +
  MMETSP0890-20130614|25837_1  3 KVPVTLIAGFLGSGKTTLLNQCIAQ 27
                 67889***************97655 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.87
                  ---GGGGHHHHHHHHHHGGB---EEEEETT CS
    PF09439.5  57 PGheklrqklleklkaksslkglvfvvDSt 86 
                  PG +  r  l e l  +  l g+v +vD+t
  MMETSP0890-20130614|25837_1 104 PGIVASRFWLDEALESRLVLDGIVCIVDAT 133
                  7778888888888888888999****9987 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00062      0.53       1      29 [.       9      37 ..       9      40 .. 0.89
   2 ?   -0.7   0.0      0.86   7.4e+02     154     172 ..     151     169 ..     115     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00062
   PF03029.12  1 vvGpaGsGKttfvgalseilelskrsvav 29
                 ++G  GsGKtt++++++   e+++ +va+
  MMETSP0890-20130614|25837_1  9 IAGFLGSGKTTLLNQCIAQNENIGLKVAL 37
                 689**************999999988876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.86
   PF03029.12 154 klelPhvvalnkfDllkek 172
                  +l l  +v+l+k+Dl+k+ 
  MMETSP0890-20130614|25837_1 151 QLALADLVILTKCDLVKQI 169
                  6677778999999998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.61
# Mc/sec: 1386.74
//
Query:       MMETSP0890-20130614|25850_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0044   16.6  10.2     0.0081   15.8   7.1    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.059   12.7   1.0       0.14   11.5   0.7    1.6  1  PF03604.8  DNA directed RNA polymerase, 7 kDa subunit
       0.21   11.1   9.2       0.43   10.1   6.4    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   7.1   1.8e-06    0.0081       3      45 ..      77     121 ..      76     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-06
    PF13923.1   3 fsCpiCleelenpviltpCgHlyCkkCieqwleks..kkkCPiCr 45 
                  ++CpiC+  +    ++t+C   +C +C  ++  +      CP+C 
  MMETSP0890-20130614|25850_1  77 YECPICFLYYGAINASTCCSQPICTDCYLKVRPPRsdVVDCPFCG 121
                  69********998899***********9999888443346****7 PP

>> PF03604.8  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   3.1e-05      0.14       2      24 ..      99     121 ..      99     123 .. 0.97

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.1e-05
    PF03604.8   2 iCgeCgaevelkrgdpirCkeCG 24 
                  iC++C  +v+  r d++ C  CG
  MMETSP0890-20130614|25850_1  99 ICTDCYLKVRPPRSDVVDCPFCG 121
                  8*********************9 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.4   9.4e-05      0.43       1      41 []      79     120 ..      79     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 9.4e-05
                  -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCS.T-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilks.rkkvkCPlC 41 
                  CpiC+ ++  +n ++ C   +C++C++k++   +  v CP C
  MMETSP0890-20130614|25850_1  79 CPICFLYYGAINASTCCSQPICTDCYLKVRPPrSDVVDCPFC 120
                  ************77777777**********99566666***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1067  (0.0780427); expected 273.4 (0.02)
Passed bias filter:                      479  (0.0350351); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.62
# Mc/sec: 1387.57
//
Query:       MMETSP0890-20130614|25855_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-23   83.5   0.0    5.7e-23   81.3   0.0    2.0  1  PF12706.2  Beta-lactamase superfamily domain
    1.2e-12   47.7   0.7    3.7e-12   46.1   0.0    2.1  2  PF00753.22 Metallo-beta-lactamase superfamily
     0.0073   15.6   0.0      0.014   14.6   0.0    1.5  1  PF01370.16 NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.3e-26   5.7e-23       2     194 .]      81     403 ..      80     403 .. 0.77

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.3e-26
                  EEEES-----TT-SS-.-SS-HHHHHT.T--EEE-S---GGG.S-....HHHHHHS-T.....EEESSHHHHHHHH..........................................................H---..................-...-EEE-SSEEE--------HHHHS.....HH--EEE...............................................................S--EEE-----S-...HHHH..HH.SEEEEE---B....--..........S...-S---------HHHH-TTSEEEEES- CS
    PF12706.2   2 riLiDpgfgtrslrlreqppaalldlp.ridavlisHaHaDHilgldslletikrlnk.....pvygplgvaeflrek........................................................kagikalepefdkkraieidkek...kieegdwwitavpaqHgsgrygl.....nkgfvle.............................................................tegkkvyysgDtgyd...fkei..kgadllileagfydddeep..........earekgHstpeeavevakdlgakkliliHf 194
                  ++L+D g+g        q ++++l  p ++da+++sH H DH++gl+ ll  i + +      ++ygp+g+a +lr+                                                         +      + e  + ++  +d+ +   ++ e ++ ++a+p  Hg +  g+     n     +                                                              +g++v++ gDt      ++ i   ++dl+i+ea+ ++               + +++gHstpe a+  a +++ak+l+l+Hf
  MMETSP0890-20130614|25855_1  81 TWLFDGGEGSQ-----VQVQKSPLVHPgKVDAIFVSHVHGDHTFGLPGLLCIIGQNQEnnrpiHIYGPQGLALYLRTSlqlsvsrvaakyivhelrnvplitppgsanytfshqldtiffgpthaaeqafpgneH------FGEIGRYDIEPNDDLTwtiQVPESSLIVKAAPMVHGVPCLGYvviepN-----KpgkihaqlvgpivdrnydalkakgikhpkkvfqvlknmrsgqsmtfpdgtklyrddvvepdRRGRVVVFCGDTCDAsrlLPLIgnTQPDLVIHEATNAHLLPYDnhidprqvakHTAAHGHSTPEMAAYFAYKARAKRLVLTHF 403
                  689*****854.....234444444477*****************9999999977777******************99*******************************99999999999888888885554442......333333333333333354466777777*********776555466443.....033333344444444455555555555666666666788888888888999999999999*879***********9423446668777***********554444999*******9999*************************9 PP

>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   8.2e-16   3.7e-12       3      88 ..      67     149 ..      65     208 .. 0.81
   2 ?   -1.0   0.0      0.23   1.1e+03     136     147 ..     322     333 ..     308     361 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 8.2e-16
                  EEEEEEEEEECSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHH CS
   PF00753.22   3 evgvnsyLvegdggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDHiGGlpglleafpapvvygaeearallrlalrd 88 
                  ++gv++  ++ +g++ L+D G+g +++ +       ++p +vda++++H H DH++Glpgll   +     + ++++++++  + +
  MMETSP0890-20130614|25855_1  67 TRGVSCAALRYEGKTWLFDGGEGSQVQVQK---SPLVHPGKVDAIFVSHVHGDHTFGLPGLLCIIGQNQENNRPIHIYGPQGLALY 149
                  6899*************************5...7***************************9888888888877777777776655 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.23
                  TTTTEEEETTTS CS
   PF00753.22 136 gggkilftGDll 147
                  +g+ ++f+GD+ 
  MMETSP0890-20130614|25855_1 322 RGRVVVFCGDTC 333
                  678899999985 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.2e-06     0.014      27      92 ..     310     375 ..     293     401 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-06
                  EESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---.HHHCC.CSHHHHHHHH CS
   PF01370.16  27 nlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesg.vdass.edpadfiean 92 
                  +l+r++  e+   +r rv ++ +d +d ++l  l+ ++qpd Vih A  ++  + ++ +dp ++++++
  MMETSP0890-20130614|25855_1 310 KLYRDDVVEPD--RRGRVVVFCGDTCDASRLLPLIGNTQPDLVIHEATNAHlLPYDNhIDPRQVAKHT 375
                  55555555533..334899*******************************987777768887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.87
# Mc/sec: 1184.41
//
Query:       MMETSP0890-20130614|25856_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-28   97.5   0.0    1.1e-27   97.0   0.0    1.2  1  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.028   14.3   0.6      0.077   12.9   0.0    2.0  2  PF02169.11 LPP20 lipoprotein


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   1.6e-31   1.1e-27       3     179 .]      11     182 ..      10     182 .. 0.98

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 1.6e-31
   PF01145.20   3 vepgevgvvvrfGkvkrvlepGlhf.klPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv..sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeaeiaraeaea 179
                  v+++evgv+++ G+++r   +G+h+ ++Pf+    +vs+rvq+ldv     ++ t D++ v+v+++v+y +  ++++++++++     ++ +++++++ +++r++l  m+ld +++ ++ +a+ ++++l + ++ yg ++ ++ +td +p+ +vk+a+++ +a+ + + ea+ a+ae+e+
  MMETSP0890-20130614|25856_1  11 VQTSEVGVIEKCGQYDRLASAGFHClMYPFEAIAGRVSLRVQQLDVQC---ETKTLDNVFVSVTISVQYSIeqEKIYEAFYRL----SSPSSQIKAYVFDTVRATLPLMNLDAAFEAKEVVAQSVQKSLGSVMSSYGYQIHQALVTDLSPDSRVKAAMNEINASKRLK-EAAFAKAEGEK 182
                  7899*********************9999888888*************...********************************....*********************************************************************************.********996 PP

>> PF02169.11  LPP20 lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.72   4.9e+03      61      61 ..      76      76 ..      45     107 .. 0.58
   2 ?   12.9   0.0   1.1e-05     0.077       9      47 ..     193     230 ..     187     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.72
   PF02169.11 61 v 61
                 +
  MMETSP0890-20130614|25856_1 76 Y 76
                 1 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.1e-05
   PF02169.11   9 psqkylyAvGsaeslraAkkdAlralaeqvsvvvissss 47 
                     kyl++vG a+  r+A+ d lr+ ++q+s +v+ ss 
  MMETSP0890-20130614|25856_1 193 AESKYLSGVGVARQ-RKAIVDGLRDSISQFSDNVKGSSP 230
                  6789********99.***************998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:01.47
# Mc/sec: 493.94
//
Query:       MMETSP0890-20130614|25861_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   72.4  13.7    3.8e-06   26.4   0.0    5.9  6  PF00400.27 WD domain, G-beta repeat
    3.2e-14   52.4   0.0    1.1e-13   50.7   0.0    2.0  2  PF12265.3  Histone-binding protein RBBP4 or subunit C of CAF1 complex
      4e-05   23.2   0.0    0.00017   21.2   0.0    2.0  1  PF08662.6  Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.012   13.3   0.0      0.035   11.8   0.0    1.7  2  PF04762.7  IKI3 family
        1.3    8.4   9.1       0.12   11.7   2.8    1.8  2  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   5.8e+03      15      30 ..     116     142 ..     114     143 .. 0.68
   2 !   13.7   0.1   1.5e-05      0.04       7      39 .]     197     229 ..     193     229 .. 0.93
   3 ?    3.2   0.1      0.03        81       9      38 ..     260     290 ..     252     291 .. 0.85
   4 !   16.0   0.1   2.6e-06    0.0071      13      39 .]     307     334 ..     298     334 .. 0.92
   5 !   26.4   0.0   1.4e-09   3.8e-06       8      39 .]     347     379 ..     340     379 .. 0.93
   6 !   18.7   0.1   3.7e-07     0.001       3      39 .]     389     426 ..     387     426 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.1
                  EEEEEESS...........STEEEEEE CS
   PF00400.27  15 tcvafspd...........gpllasgS 30 
                   + ++ pd           + +l++gS
  MMETSP0890-20130614|25861_1 116 LSFDIIPDdlgggrttfphSLVLVCGS 142
                  566777777777766666677888887 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.5e-05
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +  H + V+ va s ++ ++a+ S+Dg +r++d
  MMETSP0890-20130614|25861_1 197 FFDHPGCVNRVAASAERGVVATWSEDGHVRVFD 229
                  56799**************************98 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.03
                  SSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27   9 gHtspVtcvafspd.gpllasgSrDgtirlW 38 
                  g t + +++a+s   ++ la+g + g++ ++
  MMETSP0890-20130614|25861_1 260 GNTISGYALAWSSLaRNKLATGNDSGSLSIF 290
                  6777778999**99********999999887 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 2.6e-06
                  SEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  13 pVtcvafspd.gpllasgSrDgtirlWd 39 
                  + +++a+sp+  ++l++ ++D +ir++d
  MMETSP0890-20130614|25861_1 307 SLEDIAWSPTeTSVLVTVGCDQSIRVFD 334
                  5689**********************98 PP

  == domain 5    score: 26.4 bits;  conditional E-value: 1.4e-09
                  ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                   +Ht+ +++++++   + lla++++Dg + +Wd
  MMETSP0890-20130614|25861_1 347 NAHTNDINALSWNSAvSYLLATAGDDGFLQIWD 379
                  79******************************9 PP

  == domain 6    score: 18.7 bits;  conditional E-value: 3.7e-07
                  EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  ++ t+  H++p+t++ ++p+    l+++S+D++i  Wd
  MMETSP0890-20130614|25861_1 389 PVGTFNYHQKPITALQWDPHdEAALICSSEDHSITHWD 426
                  6889999******************************8 PP

>> PF12265.3  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0     4e-17   1.1e-13       2      70 ..      92     158 ..      91     161 .. 0.94
   2 ?   -3.3   0.0       2.8   7.6e+03      17      28 ..     262     273 ..     261     275 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 4e-17
    PF12265.3   2 eeyklWkkntpflYdmlhttalewPsLsvdwlpdslkgder.eepstqrlllGtqtsgkeqnyllvaeve 70 
                  e ++l  +++  +Y +l+ + l+wP+Ls+d++pd+l g  r ++p++  l++G+q++++++n l +++++
  MMETSP0890-20130614|25861_1  92 ESEEL--ECDLRAYSLLQYLGLDWPCLSFDIIPDDL-GGGRtTFPHSLVLVCGSQAESTNKNALNLIRLS 158
                  78999..9****************************.99999**************999*****999987 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.8
    PF12265.3  17 mlhttalewPsL 28 
                  +++ +al w sL
  MMETSP0890-20130614|25861_1 262 TISGYALAWSSL 273
                  577899*****9 PP

>> PF08662.6  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.3e-08   0.00017      36     158 ..     284     412 ..     264     430 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6.3e-08
    PF08662.6  36 ygetelylikekkkeievvelkkegpihdvaWspkskefaviyGkmpakislfdlk.....vnvisklkekkrNtifwspqgrlvllaGfgnlaGeleiydvkklkk....ia..kaeasnatlvewspdgryv 158
                   g+ +++ +++ ++++ ++  +k    +d+aWsp+++ ++v  G  +++i++fd +     +    + +++  N++ w++   ++l    g+  G l+i+d + + +    +   +++++  t ++w+p ++  
  MMETSP0890-20130614|25861_1 284 SGSLSIFHVDTANVPVLSFATDKS--LEDIAWSPTETSVLVTVG-CDQSIRVFDDRhsngpMLTRPNAHTNDINALSWNSAVSYLLA-TAGD-DGFLQIWDLRAFGThaapVGtfNYHQKPITALQWDPHDEAA 412
                  567789999999998888888777..9***************99.5889*****97555444444567788899*****99887654.4455.488*****995544111133114455667888888877655 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.41   1.1e+03     427     458 ..     203     234 ..     196     264 .. 0.57
   2 ?   11.8   0.0   1.3e-05     0.035     299     388 ..     346     436 ..     336     446 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.41
    PF04762.7 427 nvndvafsksnsklavltsdgeisiyelslkk 458
                  +vn va s+++  +a+  +dg++ ++++  + 
  MMETSP0890-20130614|25861_1 203 CVNRVAASAERGVVATWSEDGHVRVFDFRETA 234
                  55555555555555555555555555543332 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.3e-05
    PF04762.7 299 lereeekvesLaWnsdSevLavsledr..vqlwttgNyhWYLKqelrfsesegvae.vkWdpekpltllvltesgkveivdfalevarsetls 388
                   + +++++++L+Wns  + L +   d   +q+w +  +        +f+ +++  + ++Wdp+++  l++ +e++++++ d+a+e    +t +
  MMETSP0890-20130614|25861_1 346 PNAHTNDINALSWNSAVSYLLATAGDDgfLQIWDLRAFGTHAAPVGTFNYHQKPITaLQWDPHDEAALICSSEDHSITHWDLAVE--DDDTDQ 436
                  46788999*******98888887777779*****99887666666555555554445***********99999666655555554..444433 PP

>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.2   3.2e+03      71     132 ..      39      51 ..      21      59 .. 0.50
   2 ?   11.7   2.8   4.5e-05      0.12     117     141 ..     162     189 ..     127     195 .. 0.56

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.2
                  B--BSEE---EEEESS-EEEEEEE---EEEEE-EEE...........----XXXXXXXXXXX CS
   PF03066.10  71 vsvlpsvslggfeltppVtfrLksGsGPVhisGqhlvaleedesldeeddeedeeeeddeed 132
                    ++ +v ++g                                                 ed
  MMETSP0890-20130614|25861_1  39 DEIMEEVVVDG-------------------------------------------------ED 51 
                  33333333332.................................................22 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 4.5e-05
                  ....----XXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 117 e...eddeedeeeeddeedddeeeeeee 141
                      +ddeed+++   e+d++eee++e 
  MMETSP0890-20130614|25861_1 162 AvklDDDEEDDDDRVMEDDEEEEEDDER 189
                  0443444444444433333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:00.99
# Mc/sec: 1200.60
//
Query:       MMETSP0890-20130614|25869_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-44  151.1   7.5      4e-44  150.7   5.2    1.0  1  PF02487.12 CLN3 protein


Domain annotation for each model (and alignments):
>> PF02487.12  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   5.2   2.9e-48     4e-44      53     402 ..      10     359 ..       2     363 .. 0.82

  Alignments for each domain:
  == domain 1    score: 150.7 bits;  conditional E-value: 2.9e-48
   PF02487.12  53 slstaavLLadilPaLiikltaPlfldrlpfgfrvlivvllqassfllvaf..sksialsLlGvvlaslgsGlGeitfLalsayykr...iviasWssGtGgaGliGalsyafltelaklsp.kltllvllllPvlfavayfflLkspesvltsqtlepsteivdkeldkfevaeekgdnskdvssrelsllerlkllkpllfymvPLvtvylaeylinqgllelllfdishgfslslesq.yrwyqvlyqlGvfisrsslklv..rlrlqllyvLalLqlvnllfllldalysflpsilivfllilfeGllGGasyvntfkkihkkvepderefalsavsisdslGvvlaallalple 402
                    s+a v La ++P  + k  +P+ +dr  +  r ++ ++l a +f l +   +  +a+ LlGv+  s  s lGe + Lal++ y++    ++a+WssGtG aG++G   +++l +++++         ll+lP+ fa a++ l++  ++    + l   ++ ++++ ++  +ae   +     ++ +ls + rl+  ++l      +  vy+aey +  g+   + f++    + s+++q y + +  yq Gv++srss  ++  ++r + l+ +al q+  l+f+++ a  +f  +   +f+l +  Gl+GGa+yv  f+ ++   +   re a+s+ + s   G+ l+ +++l ++
  MMETSP0890-20130614|25869_1  10 NGSVALVYLAAVIPGSATKASSPFWFDRASYESRLIVATVLMAFAFALAGPigTGRLAIQLLGVACCSAQSALGEASLLALASRYPErgaRAVAAWSSGTGFAGVFGY-GWVLLLSVLGMGEmDIQTSALLTLPICFALAFYALIRLVPPA---PVLLRDSWQTTENNQQSLMAEGTEN-NAMPAKVQLSAQARLRFALGLWPVSGAIFAVYFAEYAMQSGVWAAMGFPVH---NRSKRDQfYEYANFAYQGGVLLSRSSGFFFhgTVRKRALWAMALTQCGILVFFFFVAATHFWYDQ-SIFALCFVVGLFGGACYVHGFRLLAASSKLYLRELAMSVGAFSADAGILLSNVMGLFIQ 359
                  44678899**************************************99874224689****************************9733358**************96.566666666665414445567899**********99876554...4666777777777666555555434.444567789999999999999999999***********************9...555565515556789***********99984469999**********999988887765555543.358888889********************************************999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.73
# Mc/sec: 1194.90
//
Query:       MMETSP0890-20130614|25876_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-16   59.9   5.0    2.4e-16   59.9   3.5    1.8  2  PF09335.6  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.077   12.6   0.0       0.34   10.5   0.0    1.9  2  PF13358.1  DDE superfamily endonuclease
       0.13   11.5  13.0       0.37   10.1   1.2    2.2  2  PF04893.12 Yip1 domain
        1.9    7.9   7.2        6.4    6.2   0.6    2.6  2  PF04246.7  Positive regulator of sigma(E), RseC/MucC
        2.8    7.6  10.7         12    5.6   7.7    1.8  1  PF12822.2  Protein of unknown function (DUF3816)


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2         5   1.4e+04      20      28 ..      44      52 ..      38      63 .. 0.47
   2 !   59.9   3.5   8.9e-20   2.4e-16       1     122 [.      94     211 ..      94     212 .. 0.95

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 5
    PF09335.6 20 tlvtllgal 28
                  ++++lg+ 
  MMETSP0890-20130614|25876_1 44 GILVILGTA 52
                 333333332 PP

  == domain 2    score: 59.9 bits;  conditional E-value: 8.9e-20
    PF09335.6   1 lPsevllvaaGvlfglllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                  lP+++l v++G++fg++l+ l++ +g + g+++++++gr++  + + + l++++ + +   ++  + ++ fs+ l lrl   vp ++ ny+ ++l+ +f +F++at++g +  a+l+a lG+
  MMETSP0890-20130614|25876_1  94 LPTSLLEVLGGFIFGMWLAALCSTIGKVTGSFISFAIGRKYK-RFVQSQLIEPHGYIA--GLQLAITQRPFSTCLALRLAY-VPEAVQNYTPAILDAPFPPFAAATIFGGAAYALLWAKLGA 211
                  6999999**********************************9.999999999999888..89999999*************.58**********************************9996 PP

>> PF13358.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.38     1e+03      27      45 ..      28      46 ..      15      97 .. 0.70
   2 ?   10.5   0.0   0.00013      0.34      81     122 ..     291     338 ..     258     341 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.38
    PF13358.1 27 eraekskgrgqrvsvigai 45
                  r+  +k r+++v++ g +
  MMETSP0890-20130614|25876_1 28 TRTNPQKRRRRTVWFAGIL 46
                 4444555666677777664 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00013
    PF13358.1  81 kivivlDnasyHks.......kelqklieaeaaglellflPpysPdLNp 122
                  +  +   n ++H++        e +++i++ +a+l ++ lP+++P LNp
  MMETSP0890-20130614|25876_1 291 RRSLSANNGNFHHFalqqrddDESSRAIAR-EADLIFENLPAHHPPLNP 338
                  556667899999996666666444444666.68***************9 PP

>> PF04893.12  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.7    0.0017       4.7      18      97 ..      36     125 ..      23     130 .. 0.61
   2 ?   10.1   1.2   0.00013      0.37      20      86 ..     182     248 ..     166     262 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
   PF04893.12  18 ilrapdlyllllalltlllgllas...........lnlgqtlasgeevqgltlssllgaiiggllglllgllllalllhliakllg.gkgsf 97 
                   +r ++++++l++l t+  ++++            + l+ +++++   ++      l a++ + l+ +lg ++++++l  ++ + g  +gsf
  MMETSP0890-20130614|25876_1  36 RRRTVWFAGILVILGTASAVAVLCrgslvrtatkiGHLPRYQGGA--FYSALVTLWLLALLPTSLLEVLGGFIFGMWLAALCSTIGkVTGSF 125
                  455688888888888888887777766655555544444444444..555555555555555556567777777777777666666655555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00013
   PF04893.12  20 rapdlyllllalltlllgllas...lnlgqtlasgeevqgltlssllgaiiggllglllgllllalllhl 86 
                  + +d +++ +a++t++ g++++       +  as ++v ++ +  + +  ++++l++ ++l+l+ ll+h+
  MMETSP0890-20130614|25876_1 182 AILDAPFPPFAAATIFGGAAYAllwA---KLGASLQDVKDIIQDGMSTEKLIFILVGAISLVLFLLLIHF 248
                  57899*****************5552...33333344444445555555444444445555555555555 PP

>> PF04246.7  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6    0.0071        20      72     123 ..      86     140 ..      76     147 .. 0.62
   2 ?    6.2   0.6    0.0023       6.4      92     122 ..     224     254 ..     190     260 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0071
    PF04246.7  72 llvYllPLlalllgallgqallls...ellaallgllglllgflilrllakklkk 123
                  +++ ll Ll   l  +lg +++      l ++++ + g +++f+i r +++  ++
  MMETSP0890-20130614|25876_1  86 VTLWLLALLPTSLLEVLGGFIFGMwlaALCSTIGKVTGSFISFAIGRKYKRFVQS 140
                  4444444444444444444444333336899999999999999999999776654 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0023
    PF04246.7  92 lllsellaallgllglllgflilrllakklk 122
                  +  ++l+ +l+g++ l+l +l++++++++l 
  MMETSP0890-20130614|25876_1 224 MSTEKLIFILVGAISLVLFLLLIHFYTTRLI 254
                  334499********************99975 PP

>> PF12822.2  Protein of unknown function (DUF3816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.7    0.0043        12      32     126 ..      97     248 ..      38     262 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0043
    PF12822.2  32 hipvilggllfGpvvGiiigll....tdllsallgggg........................................sgfiflgf..............llsfvpriligviagllykkhkkkkkkek.......vlsiiisgvlgtivatllliliil 126
                   +  +lgg++fG++ +++ + +     +++s+ +g  +                                               +              + ++ + i+ g  ++ll+ k     +  k           +i +++g+i+ +l+l+li +
  MMETSP0890-20130614|25876_1  97 SLLEVLGGFIFGMWLAALCSTIgkvtGSFISFAIG--RkykrfvqsqliephgyiaglqlaitqrpfstclalrlayvP------EavqnytpaildapfPPFAAATIFGGAAYALLWAKLGASLQDVKdiiqdgmSTEKLIFILVGAISLVLFLLLIHF 248
                  33334566666666666666665555555555552..234555555555555444444444444433333333333330......033333333333333555555555555555666555554444448888888777777777777777777776663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       582  (0.0425688); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.99
# Mc/sec: 847.20
//
Query:       MMETSP0890-20130614|25884_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   16.7   0.2     0.0063   16.1   0.1    1.4  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
     0.0067   16.1   0.0     0.0092   15.7   0.0    1.2  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.2e-07    0.0063       4      75 ..      83     138 ..      80     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.2e-07
                  SS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCEHCCTTHHHHHHHTTSSEEECCCS CS
   PF00111.22   4 dgkevevevadgettlldaaeenggidipysCggggCgtClvevnegevqsdetelegeeldegklrlaCqt 75 
                  +g +++++  dg +   + a +    ++ ysC  g CgtC   + +         + g+e     ++  C +
  MMETSP0890-20130614|25884_1  83 NGVGITAQSGDGFS---ELATKC-RWPVQYSCDSGYCGTCEHPLRS--------AHNGDE----RYARLCIA 138
                  66666666644444...556556.7899*****999****965552........233333....24466665 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-06    0.0092       8      50 ..      11      54 ..       5      76 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-06
    PF13180.1  8 sqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksl..t 50
                 ++++ + gv+vv +++++ ++++ + ++D++l+v+ ++ ++l  +
  MMETSP0890-20130614|25884_1 11 EERD-ELGVKVVAIDPEGNSSGQDIFINDVLLAVNKNRCDKLpfE 54
                 4444.58******************************99776444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 597.06
//
Query:       MMETSP0890-20130614|25912_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       999  (0.073069); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1148.94
//
Query:       MMETSP0890-20130614|25930_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-44  148.5   4.1    4.1e-16   58.3   0.1    3.1  3  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   3.9e-12   5.4e-08       9      90 ..      23      99 ..      18     104 .. 0.92
   2 !   58.3   0.1     3e-20   4.1e-16       2      90 ..     120     203 ..     119     207 .. 0.95
   3 !   58.2   0.0   3.2e-20   4.4e-16       6      92 ..     216     302 ..     211     306 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.9e-12
                 HH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22  9 llaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkk 90
                  ++G +Ag++a+ + +P+ ++K   q      s  + g++++ k+++  +G+rg++ G +++++r+vp++++  ++y ++ +
  MMETSP0890-20130614|25930_1 23 WVSGTAAGLAATYAKQPIQRIKWIQQ-----TSVGNVGLWSIGKETIALHGWRGFFAGSVAAIFRNVPHSVLVYSMYPHFAR 99
                 579********************999.....667789***********************************9999987766 PP

  == domain 2    score: 58.3 bits;  conditional E-value: 3e-20
                  HHHHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   2 klsvlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkk 90 
                  k+s+l ++laG +  ++a++vt+Pld++++rl       ++ + +i ++   iy+ +G +g+y+G++++ll+  p  a+ f+++e+ k 
  MMETSP0890-20130614|25930_1 120 KESFLTRFLAGYVTMIAATVVTHPLDTLRVRLS-----VAKTHESIASCALFIYRMDGALGFYSGFSATLLGAGPRGAVGFAVFESAKP 203
                  6799*****************************.....788899*****************************************9985 PP

  == domain 3    score: 58.2 bits;  conditional E-value: 3.2e-20
                  HHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   6 lksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                  + ++l+G +Ag++a ++++Pld+v+ r q+    ++     + +a+  i+++eG+ gl++G+  nl+++  a a+ f++ + +k+ l
  MMETSP0890-20130614|25930_1 216 ISKFLCGYVAGVLAETLVYPLDTVRRRQQALGVASPLFGAPTHRAIMLIVQNEGFSGLFKGIALNLVKNPAAVAVSFLINDLVKETL 302
                  5789*************************777777777799999****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.60
# Mc/sec: 1421.84
//
Query:       MMETSP0890-20130614|25945_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       735  (0.0537595); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.59
# Mc/sec: 974.79
//
Query:       MMETSP0890-20130614|25935_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-12   45.9   0.0    5.3e-08   32.3   0.1    3.1  2  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain
    3.7e-06   25.8   3.7    7.6e-06   24.8   2.6    1.6  1  PF00641.13 Zn-finger in Ran binding protein and others
  ------ inclusion threshold ------
       0.05   13.0   7.2       0.08   12.4   1.0    2.6  2  PF02809.15 Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0011       5.2       5      69 ..     146     211 ..     143     216 .. 0.79
   2 !   32.3   0.1   1.2e-11   5.3e-08      71     178 ..     231     330 ..     228     357 .] 0.69

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0011
                  EEE--TTSHHHHHHHHHHHHTS-TTTTEEEEEEEEEEEE-.--CCCCGCCGG.SS-EEEEEE---GG CS
   PF00644.15   5 lepldkkseeykeiekylkktrdsthaklkileifrvqre.geaerfqekkk.lrnrrlLwHGsrlt 69 
                  +  l+++s + +ei++ + k  ++   + ++ +i+rv     +  r ++  + ++n r  +HG+++t
  MMETSP0890-20130614|25935_1 146 IALLTRASPDRSEIAQHFVKAWRKAG-NPRVRHIYRVTPSpWLRARHDRYAAlVGNLRQRYHGTSST 211
                  7788999999999*999999999444.9********975414445555554489**********997 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 1.2e-11
                  -------------TTS-....----------EEBSSHHHHHGGG---SS.........S----EEEEEEE---EEE-SS--T.-..SS------EEE----EEEGG.EE---E----EEE---- CS
   PF00644.15  71 vasilsqGLriappeap....vtGymfGkGiYfAddaskSanYcktsea.........ngeglllLaeValGdikeltkady.l..ekakkgkksvkgkgktepesivekdgvPlgkssatkye 178
                  ++sil qG+r+++  ++    +   ++G GiY++  + kS  Y + +e          ++ +++l+++Va G  ++ t+a+  l  +k+++g++s+ g+                         
  MMETSP0890-20130614|25935_1 231 LCSILAQGFRLDKAATGplfkLRKLRYGAGIYLSATSGKSNDYAQRTERlrpgnfgrqERYRCMLVCSVAAGRAYKTTAAELdLpnNKPPSGYDSIVGE------------------------V 330
                  689*******9987765222245556*******************987777777664334555**********66666666665556666666666654........................3 PP

>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   2.6   1.7e-09   7.6e-06       3      29 ..      48      74 ..      46      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.7e-09
   PF00641.13  3 gdWdCskClvqNfawstkCvaCqapkp 29
                 ++W Cs C+++N  ++ +Cv+Cqa ++
  MMETSP0890-20130614|25935_1 48 KKWSCSRCTLDNDMSNGRCVMCQADRE 74
                 68**********************997 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.0   1.8e-05      0.08       1      18 []       3      20 ..       3      20 .. 0.94
   2 ?    3.3   0.3     0.015        67      10      18 .]      31      39 ..      31      39 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
                 CCCHHHHHHHHHHHHHHH CS
   PF02809.15  1 msEEedLqlALalSleea 18
                 ++EEe+L+  LalS+ ea
  MMETSP0890-20130614|25935_1  3 DDEEEQLKMVLALSRKEA 20
                 69*************997 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.015
                 HHHHHHHHH CS
   PF02809.15 10 ALalSleea 18
                 A alSleea
  MMETSP0890-20130614|25935_1 31 AVALSLEEA 39
                 89******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.65
# Mc/sec: 1316.15
//
Query:       MMETSP0890-20130614|25932_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.72
# Mc/sec: 881.99
//
Query:       MMETSP0890-20130614|25951_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-44  152.5   0.0    2.3e-44  151.5   0.0    1.4  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    4.1e-10   39.3   0.2    1.2e-08   34.5   0.1    2.6  2  PF13847.1  Methyltransferase domain
    4.2e-10   40.0   0.1    1.6e-09   38.1   0.0    2.0  2  PF12847.2  Methyltransferase domain
    7.2e-10   38.6   0.0    1.3e-09   37.8   0.0    1.4  1  PF13489.1  Methyltransferase domain
      2e-09   37.4   0.0    4.2e-09   36.3   0.0    1.5  1  PF13659.1  Methyltransferase domain
    4.2e-08   33.3   0.1    1.7e-07   31.4   0.0    2.0  2  PF13649.1  Methyltransferase domain
    5.1e-08   32.3   0.0    1.3e-07   31.1   0.0    1.6  2  PF05175.9  Methyltransferase small domain
    1.6e-06   28.3   0.0    7.5e-06   26.2   0.0    2.1  2  PF08242.7  Methyltransferase domain
    0.00028   21.1   0.1     0.0014   18.9   0.0    2.2  1  PF08241.7  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.036   13.3   0.0    1.5  1  PF07021.7  Methionine biosynthesis protein MetW
      0.019   14.2   0.0      0.036   13.3   0.0    1.5  1  PF03602.10 Conserved hypothetical protein 95
      0.034   13.7   0.0      0.062   12.8   0.0    1.4  1  PF13679.1  Methyltransferase domain
      0.035   13.5   0.0      0.062   12.7   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.035   12.9   0.0      0.065   12.1   0.0    1.3  1  PF07091.6  Ribosomal RNA methyltransferase (FmrO)


Domain annotation for each model (and alignments):
>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   2.4e-47   2.3e-44      11     286 ..      48     357 ..      40     359 .] 0.77

  Alignments for each domain:
  == domain 1    score: 151.5 bits;  conditional E-value: 2.4e-47
    PF06325.8  11 keaeeavseiLeelgakgvaiedsk..lleerdif.e......pkl.eeesllkevkvkalfkeetdakeliaqleelelglekgkvkveeleeedWaeewkkyykPvrigerltivpsweeypeeeeelvieldpGlAFGTGtHpTTklclealeklvkeg.eevlDvGtGSGiLaiaaakLga.kkvvavDiDevAvkvakeNaelNkveaklevallkelp................k........ekadvivaNILaevlieLaedikelvkeg.gllilSGilkekaeevaealeqgfeleevleree 286
                  k ++e++se L+e+ga++v  +d++    eer+i+ e        +  +++ +++  v a+ ++ +   +l++q++e  + l++   +       dW +e  ++++P+ i  +l i   w+++++ ++   ++l+ G AFGTG+HpTT++c ++++++  +  ++++D+G+GSGiLa+ a+k g  +++++vD+D+ A+++ k+Na+ N+  ++ +  l++  +                +         ++d+++aNIL ++l +L  ++++lv++g g l++SGi k++ ++  + +  +f  ++++ +e+
  MMETSP0890-20130614|25951_1  48 KISAEELSECLIEFGAQSVDASDEDagKAEERPIYrEpseafdVFTdCASEFWSNCIVRAIVSK-NIESSLVKQINEILN-LQTLPERRMLDTSIDWLKEQ-EKLRPAIIVGDLRIILPWHKSESVTKLGDLRLEGGSAFGTGEHPTTRMCCQWIQAFHSPAfARIMDYGCGSGILALTALKTGRyAQAIGVDVDPDAIRACKRNAKANDFVHQAQFFLPAISSpfytprqshfdyddddQfvslpndmPPFDLVIANILLNPLRDLSHTLASLVHSGhGVLAVSGIRKSQFQDFFDIYDPFFADINIQAEED 357
                  56799****************9999767889999866333332122123344777999999984.444566677777666.55555555555679***985.667888887788888888888664666679**************************9987579*******************64799********************8888777754322222233333334454444144455566899***********************97549*********************999998876654 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   1.2e+03      14      76 ..      32      91 ..      12     146 .. 0.58
   2 !   34.5   0.1   1.2e-11   1.2e-08       6      94 ..     209     316 ..     208     344 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.2
    PF13847.1 14 tGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklleesfDl 76
                 +G +l el  +l ++ k+   + se  ie+  + +     +  + ++  i   ++   e fD+
  MMETSP0890-20130614|25951_1 32 NGLDLVELRYRLSEKDKISAEELSECLIEFGAQSVDASDEDAGKAEERPIYREPS---EAFDV 91
                 4444444444444444444444444444444443333333333333333333331...45555 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 1.2e-11
    PF13847.1   6 kvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdiee.leklle..esfDl..................visnevlnaladpqkvlk 94 
                  +++D+GCG+G l+l +  + g  a+ +G+D +++ai  +k++a+ + f  +++F    i + + +  +  + fD+                  vi+n +ln l d++ +l 
  MMETSP0890-20130614|25951_1 209 RIMDYGCGSGILALTAL-KTGRYAQAIGVDVDPDAIRACKRNAKANDFVhQAQFFLPAISSpFYT--PrqSHFDYddddqfvslpndmppfdlVIANILLNPLRDLSHTLA 316
                  799**************.99****************************98999988666554442..12355666444444444444444444777766666666666655 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.4   2.3e+03      72      72 ..      90      90 ..      30     149 .. 0.53
   2 !   38.1   0.0   1.7e-12   1.6e-09       3     103 ..     208     321 ..     206     331 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2.4
    PF12847.2 72 D 72
                 D
  MMETSP0890-20130614|25951_1 90 D 90
                 2 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 1.7e-12
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellq...................gda.keelsllerfDavllkgltldallaldeprrvlealpkllkp 103
                  +ri+D GcG+G l+l +++  + a+ +gvD ++++++ +++nak++d  ++ ++                      d     +++ ++fD+v+++   l+ l +l       + l++l+++
  MMETSP0890-20130614|25951_1 208 ARIMDYGCGSGILALTALKTGRYAQAIGVDVDPDAIRACKRNAKANDFVHQAQFFLpaisspfytprqshfdyddDDQfVSLPNDMPPFDLVIANI-LLNPLRDL------SHTLASLVHS 321
                  68*****************************************889999999966657777777777666666654444555666666******98.44445555......5555555555 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.3e-12   1.3e-09       6     118 ..     192     332 ..     188     351 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.3e-12
    PF13489.1   6 ereladllerllarlkpggrvLDiGcGtGillell.aengf.dvtgvDpspaaigk.......akqaqksqfdeed........aaepag...................kfdlivarevlehvpdpeellrqiaellkpg.Gylllstpn 118
                  +r++++ ++++    ++ +r++D+GcG+Gil+    ++ ++ + +gvD +p ai +        +++++ qf+ ++             +                   +fdl++a+ +l+ ++d+ ++l+++      g G+l +s  +
  MMETSP0890-20130614|25951_1 192 TRMCCQWIQAFH--SPAFARIMDYGCGSGILALTAlKTGRYaQAIGVDVDPDAIRAckrnakaNDFVHQAQFFLPAisspfytpR----QshfdyddddqfvslpndmpPFDLVIANILLNPLRDLSHTLASLVH---SGhGVLAVSGIR 332
                  578899998777..6899***********99888844444469************998888885555555554444333332220....02222233345666666699****************9998877655...455677666655 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   4.3e-12   4.2e-09       3      78 ..     209     303 ..     207     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 4.3e-12
    PF13659.1   3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaragl.................aervrvrqgdlrdlaellra..gsfdlvvtnp 78 
                  r++d gcGsG+++l+al+ +  a+++gv++dp a+++++rn++ ++                  + + ++ + d  +++  l+   ++fdlv++n 
  MMETSP0890-20130614|25951_1 209 RIMDYGCGSGILALTALKTGrYAQAIGVDVDPDAIRACKRNAKANDFvhqaqfflpaisspfytPRQSHFDYDDDDQFV-SLPNdmPPFDLVIANI 303
                  899****************999********************9988888888899999888886444566666665555.34333489*****997 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.3   6.1e+03       7      45 ..      31      67 ..      30      77 .. 0.67
   2 !   31.4   0.0   1.7e-10   1.7e-07       1      79 [.     210     306 ..     210     324 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 6.3
    PF13649.1  7 GsGrviraltraldkgpeqrvigvDiseealelakerls 45
                 G+G ++ +l  +l+++  +++ + ++se+ +e++++ ++
  MMETSP0890-20130614|25951_1 31 GNGLDLVELRYRLSEK--DKISAEELSECLIEFGAQSVD 67
                 6666666777666433..677777788888877776664 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 1.7e-10
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvq....................adaralpfeegefdlvvcaglsle 79 
                  i+d GCGsG  i alt al++g+ ++ igvD++++a++++k++++++++  +++f+                     + + +lp ++ +fdlv+   l l+
  MMETSP0890-20130614|25951_1 210 IMDYGCGSG--ILALT-ALKTGRYAQAIGVDVDPDAIRACKRNAKANDFvhQAQFFLpaisspfytprqshfdydddDQFVSLPNDMPPFDLVIANIL-LN 306
                  89******8..55665.4578888**********************9999999998744444444444444444333333445789999999998555.44 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.3e-10   1.3e-07      25      86 ..     200     262 ..     194     278 .. 0.89
   2 ?   -3.3   0.0       4.5   4.4e+03      39      53 ..     320     334 ..     301     343 .. 0.68

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.3e-10
                  HHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EE CS
    PF05175.9  25 etlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevl 86 
                  ++++++   +++D GcG G+l+++++k +  ++   vD++  A++++k+n++an++ + ++++
  MMETSP0890-20130614|25951_1 200 QAFHSPAFARIMDYGCGSGILALTALKTGRYAQAIGVDVDPDAIRACKRNAKANDFVHqAQFF 262
                  6677777889********************************************987656665 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4.5
                  ------HHHHHHHH- CS
    PF05175.9  39 GcGaGvlgaalakes 53 
                   +G Gvl+++  ++s
  MMETSP0890-20130614|25951_1 320 HSGHGVLAVSGIRKS 334
                  478999988766655 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.2   5.1e+03      63      71 ..      78      93 ..      46     126 .. 0.57
   2 !   26.2   0.0   7.7e-09   7.5e-06       1      89 [.     211     318 ..     211     321 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.2
    PF08242.7 63 gg.......ssfDvvv 71
                 ++       ++fDv +
  MMETSP0890-20130614|25951_1 78 ERpiyrepsEAFDVFT 93
                 2255566667777765 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 7.7e-09
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.....................ssfDvvvasnvlhhlkdirevldni 89 
                  ++ GcG+G l+ + l+  + ++ +gvD++p+ai + k+  ++++  + +++ l a++                              fD+v+a+ +l+ l+d+  +l+++
  MMETSP0890-20130614|25951_1 211 MDYGCGSGILALTALKTGRYAQAIGVDVDPDAIRACKRNAKANDFVHQAQFFLPAISSPFY--TprqshfdyddddqfvslpndmPPFDLVIANILLNPLRDLSHTLASL 318
                  689******************************5555555555554444444444444444..366**********************************9999999876 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-06    0.0014       2      45 ..     212     256 ..     211     321 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-06
    PF08241.7   2 dvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle 45 
                  d GcG+g+l+    +  + a+ +gvD+++ +++ +k+++k+++  
  MMETSP0890-20130614|25951_1 212 DYGCGSGILALTALKTgRYAQAIGVDVDPDAIRACKRNAKANDFV 256
                  89******999999999*********************9998643 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-05     0.036      13      53 ..     206     247 ..     193     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.7e-05
    PF07021.7  13 pgsrvldlGcGdGel.lellkeekqvdgrGleldeegvaecv 53 
                  + +r++d GcG G l l+ lk  +  ++ G+++d +++ +c 
  MMETSP0890-20130614|25951_1 206 AFARIMDYGCGSGILaLTALKTGRYAQAIGVDVDPDAIRACK 247
                  4589*********99799*********************996 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-05     0.036      36      97 ..     199     262 ..     194     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.7e-05
   PF03602.10  36 laae.elegarvLDlfaGsGalglEAlSRg.aksvvlvekdkkavavlkenlealkleeevavl 97 
                  ++a  + + ar++D  +GsG l+l Al  g  ++++ v+ d+ a++++k+n +a ++ ++++ +
  MMETSP0890-20130614|25951_1 199 IQAFhSPAFARIMDYGCGSGILALTALKTGrYAQAIGVDVDPDAIRACKRNAKANDFVHQAQFF 262
                  555534567899***************6552378999****************99998866655 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.4e-05     0.062      22      77 ..     203     254 ..     190     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.4e-05
    PF13679.1  22 keegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklg 77 
                  ++ +  +++D G+G g La ++ +    +    + +g+dv++++++++++ a++  
  MMETSP0890-20130614|25951_1 203 HSPAFARIMDYGCGSGILALTALK----TGRYAQAIGVDVDPDAIRACKRNAKAND 254
                  4556689************98877....4578999***********9999887655 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.3e-05     0.062      64     122 ..     194     254 ..     186     262 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.3e-05
                  HHHHHTT...--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT CS
   PF01135.14  64 lalelle...lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkld 122
                  +++++++     + ar+++ G+GsG+l+ ++a   g+ +++++++  ++ +++ krn k++d
  MMETSP0890-20130614|25951_1 194 MCCQWIQafhSPAFARIMDYGCGSGILA-LTALKTGRYAQAIGVDVDPDAIRACKRNAKAND 254
                  788888874344569***********96.66777899999***************9998876 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.6e-05     0.065     103     157 ..     204     258 ..     197     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.6e-05
    PF07091.6 103 lptpasvlDlaCgLnplavpwmklaedatylasDidkalvefieaflallgvege 157
                  +p+ a+++D +Cg   la+  +k    a+ +++D+d + + + ++ +++ +  ++
  MMETSP0890-20130614|25951_1 204 SPAFARIMDYGCGSGILALTALKTGRYAQAIGVDVDPDAIRACKRNAKANDFVHQ 258
                  57789**********************************9999988877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.75
# Mc/sec: 1147.06
//
Query:       MMETSP0890-20130614|25940_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-81  272.7   0.0    4.7e-81  271.8   0.0    1.4  1  PF03133.10 Tubulin-tyrosine ligase family
    4.2e-05   22.3   0.0     0.0012   17.5   0.0    2.2  2  PF14398.1  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.038   12.9   0.0        1.5    7.6   0.0    2.2  2  PF14397.1  Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.8   0.0     1e-84   4.7e-81       8     286 ..     213     497 ..     205     504 .. 0.94

  Alignments for each domain:
  == domain 1    score: 271.8 bits;  conditional E-value: 1e-84
   PF03133.10   8 dqllnhfpesseitrkdllvknlkrtkkkeekk....lkflprtfvlpadlrefveeaekeesntwIvKpsasarGkgIrvfnklsdilkivsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkss.......s.lneesnekkgkkwslqelekyleeirkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlksttkldaelkeeliddvln.vvv 286
                  +q++nh+p+s ++trkdll++++ r  +  +k+    +++lp+tfv+p+d++++v ++ +e+  +wI+Kp   +rG+gIr++++++d+        +e +vvqkYi +PLL++g KFDlRlyvlvts+ pL++Y+Yk g++R as+ +s + ++++d+++HLTN siqk+         + +  e  e  g+k +l+ l+k+l++ r++  ++++++ i ++ila+ +  + +++  ++n+fel+G+D+lide+lkpwL+EvNasP++++ t+lda++ke+li+d+++  + 
  MMETSP0890-20130614|25940_1 213 WQRVNHYPNSRYLTRKDLLARSIGRVVHLAGKEsraaFDILPQTFVMPQDYQKLVPAFFQEKDHLWIIKPVGLSRGRGIRIVSRIEDVR------YSELVVVQKYIPNPLLLHGFKFDLRLYVLVTSFSPLEAYIYKSGFARVASRAFSDTATSAHDKFIHLTNASIQKNAPenpfidsAfKDAEIHEAGGSKCNLEFLWKQLKISRPDINISDLWHSICEVILAS-LVCVDPHIPHQPNSFELFGYDVLIDEKLKPWLIEVNASPSMARPTTLDAQIKETLIRDTIRlLNP 497
                  89***********************999999999999****************************************************......89************************************************************************97677787642467777889999**********************************.************************************************************95333 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.011        51      36      81 ..     253     302 ..     238     313 .. 0.67
   2 !   17.5   0.0   2.6e-07    0.0012     194     249 ..     429     486 ..     393     494 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.011
    PF14398.1  36 Lpetelvks.aes.lkkll.srykkvylKPasGskGkgiirltkkeg.ky 81 
                  Lp+t  +++ +++ + ++  ++ +  ++KP+  s+G+gi  +++ e  +y
  MMETSP0890-20130614|25940_1 253 LPQTFVMPQdYQKlVPAFFqEKDHLWIIKPVGLSRGRGIRIVSRIEDvRY 302
                  6666555331333033444145666799***********99999876544 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2.6e-07
    PF14398.1 194 alkiaelldkalear...lgELGlDlglDkegriWllEvNskPgkksfkeakdeeareq 249
                  +l+   ++d +++ +   +   G D+ +D++ ++Wl+EvN+ P+ +  + +  ++++e 
  MMETSP0890-20130614|25940_1 429 ILASLVCVDPHIPHQpnsFELFGYDVLIDEKLKPWLIEVNASPSMARPTTLD-AQIKET 486
                  5555567777777777745556*********************998777753.444444 PP

>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0    0.0098        45      66     100 ..     269     302 ..     237     314 .. 0.75
   2 ?    7.6   0.0   0.00034       1.5     235     263 ..     447     474 ..     425     493 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0098
    PF14397.1  66 afireeepkelvvKpvdgsgGkgieileaddqvsa 100
                  af  +e+    ++Kpv  s G+gi+i++++++v +
  MMETSP0890-20130614|25940_1 269 AFF-QEKDHLWIIKPVGLSRGRGIRIVSRIEDVRY 302
                  344.44567789***************99987544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00034
    PF14397.1 235 vrliGWDvAiteeg.pvliEgNtnqvpgve 263
                  ++l G+Dv i+e+  p liE+N++  p++ 
  MMETSP0890-20130614|25940_1 447 FELFGYDVLIDEKLkPWLIEVNAS--PSMA 474
                  6789*********99********9..6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.78
# Mc/sec: 1824.92
//
Query:       MMETSP0890-20130614|25961_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.54
# Mc/sec: 381.64
//
Query:       MMETSP0890-20130614|25962_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.74
# Mc/sec: 1622.40
//
Query:       MMETSP0890-20130614|25960_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    9.3   5.7       0.18   11.7   1.0    2.0  2  PF14432.1 DYW family of nucleic acid deaminases
          2    8.8  12.1        6.2    7.2   0.6    3.8  2  PF04233.9 Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> PF14432.1  DYW family of nucleic acid deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.77   5.2e+03       9      17 ..     191     199 ..     163     217 .. 0.53
   2 ?   11.7   1.0   2.7e-05      0.18      29      76 ..     283     335 ..     243     342 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.77
    PF14432.1   9 kkslsgwah 17 
                   +++s+  +
  MMETSP0890-20130614|25960_1 191 SQTASDHTT 199
                  122233332 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 2.7e-05
    PF14432.1  29 tervmkiskivghnlrldereky.dqgqpgk...fyasHAEKqliayfidr....f 76 
                   e+ m + + + +n  +++r  y +q q+++    + +HAEK++i+ ++++    +
  MMETSP0890-20130614|25960_1 283 REGFMWQASRITYNQAQKKR--YiEQ-QKKQeelSMQEHAEKLAIIANQETirasI 335
                  56677777777777777666..6333.33335668899********9998765553 PP

>> PF04233.9  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.6   0.00091       6.2      21      72 ..     169     219 ..     152     263 .. 0.79
   2 ?    2.1   3.2     0.036   2.5e+02      27      55 ..     307     341 ..     259     361 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00091
    PF04233.9  21 akelkkrgqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvav 72 
                    + ++ +++ + ++l+ ++ t++++a+  + +++++   + + e+ +++ +
  MMETSP0890-20130614|25960_1 169 MHQFQEETKV-EEAKLQNTYETQSQTASDHTTHEENDSRDDLQLETSSHEGS 219
                  5566777777.888*******************9987777777665555554 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.036
    PF04233.9  27 r.......gqlssrsrlrtiartetlraynaarlaq 55 
                  +       +q   +++l++ia++et+ra+  a+ + 
  MMETSP0890-20130614|25960_1 307 QkkqeelsMQE-HAEKLAIIANQETIRASILAKNDD 341
                  12223444555.677899999999999888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1400  (0.102399); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.97
# Mc/sec: 953.60
//
Query:       MMETSP0890-20130614|25966_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-70  232.5   0.0    2.9e-15   55.3   0.0    5.3  5  PF13475.1  Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.011   15.3   0.0          7    6.3   0.0    3.4  4  PF07892.6  Protein of unknown function (DUF1667)
       0.07   13.5   0.1         14    6.1   0.0    3.0  3  PF05363.7  Herpesvirus US12 family
       0.19   11.2   0.8         12    5.4   0.1    3.7  2  PF01918.16 Alba


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.7e-12   2.6e-08       8      48 ..      19      58 ..      14      59 .. 0.94
   2 !   55.3   0.0   8.5e-19   2.9e-15       2      49 .]      62     109 ..      61     109 .. 0.98
   3 !   52.4   0.0     7e-18   2.4e-14       1      49 []     111     159 ..     111     159 .. 0.97
   4 !   49.5   0.0   5.6e-17   1.9e-13       1      49 []     161     210 ..     161     210 .. 0.97
   5 !   35.6   0.0   1.2e-12   4.1e-09       1      33 [.     212     244 ..     212     247 .. 0.96

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7.7e-12
    PF13475.1  8 avkkngsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
                 +vkk g +lk+++ e++ D+e++l Avkqn +al+++ +eL
  MMETSP0890-20130614|25966_1 19 YVKKGGHYLKHAP-EFQDDREVILVAVKQNAYALRHVRKEL 58
                 79***********.************************998 PP

  == domain 2    score: 55.3 bits;  conditional E-value: 8.5e-19
    PF13475.1   2 rEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                  rE++l+avk ng+al +++ eL+nD+e++l Av qn  +l+yas eLr
  MMETSP0890-20130614|25966_1  62 REFMLAAVKENGNALFFANQELRNDREVALTAVTQNVFVLDYASQELR 109
                  9**********************************************8 PP

  == domain 3    score: 52.4 bits;  conditional E-value: 7e-18
    PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngsalsyaseeLr 49 
                  D+ ++l+av+ +g+al ++s+eLk D+e+vl+Av+++g+al yas +L+
  MMETSP0890-20130614|25966_1 111 DKKFMLAAVQVDGCALGFASPELKADREVVLAAVQKDGHALGYASLDLK 159
                  899******************************************8886 PP

  == domain 4    score: 49.5 bits;  conditional E-value: 5.6e-17
    PF13475.1   1 DrEivleavkkngsalky.lseeLknDkeivlkAvkqngsalsyaseeLr 49 
                  DrE+vl+a+++ng+al y + +eLknD+e+ l Avkqng+al +a  eLr
  MMETSP0890-20130614|25966_1 161 DREVVLAAFQQNGNALMYdIAPELKNDREVTLVAVKQNGTALVFANQELR 210
                  9******************888************************9998 PP

  == domain 5    score: 35.6 bits;  conditional E-value: 1.2e-12
    PF13475.1   1 DrEivleavkkngsalkylseeLknDkeivlkA 33 
                  DrEivl+avk++g al ++s+eL+ D+eiv +A
  MMETSP0890-20130614|25966_1 212 DREIVLAAVKNDGGALFFASPELRADQEIVYYA 244
                  9*****************************998 PP

>> PF07892.6  Protein of unknown function (DUF1667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.61   2.1e+03       6      23 ..      78      95 ..      74      98 .. 0.84
   2 ?    6.3   0.0     0.002         7       5      32 ..     102     129 ..     100     151 .. 0.86
   3 ?   -1.1   0.0       0.4   1.4e+03       6      29 ..     128     151 ..     125     172 .. 0.74
   4 ?    4.7   0.0    0.0062        21       5      29 ..     203     227 ..     199     245 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.61
    PF07892.6  6 YakkeltnpkriltstVk 23
                 +a++el n + +  + V 
  MMETSP0890-20130614|25966_1 78 FANQELRNDREVALTAVT 95
                 899****99999888875 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.002
    PF07892.6   5 eYakkeltnpkriltstVkveggelplv 32 
                  +Ya +el n k+ + + V+v+g+ l + 
  MMETSP0890-20130614|25966_1 102 DYASQELRNDKKFMLAAVQVDGCALGFA 129
                  7********************9887655 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.4
    PF07892.6   6 YakkeltnpkriltstVkveggel 29 
                  +a  el++ + ++ + V+ +g  l
  MMETSP0890-20130614|25966_1 128 FASPELKADREVVLAAVQKDGHAL 151
                  788899999999999998887764 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0062
    PF07892.6   5 eYakkeltnpkriltstVkveggel 29 
                   +a++el n + i+ + Vk +gg l
  MMETSP0890-20130614|25966_1 203 VFANQELRNDREIVLAAVKNDGGAL 227
                  69*****************999986 PP

>> PF05363.7  Herpesvirus US12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0041        14      32      51 ..      82     101 ..      76     128 .. 0.69
   2 ?   -2.2   0.0       1.6   5.6e+03      34      47 ..     185     198 ..     174     205 .. 0.71
   3 ?    3.8   0.0     0.022        76      31      61 ..     207     238 ..     193     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0041
    PF05363.7  32 reredreaartavtdPelPl 51 
                    r+dre a tavt     l
  MMETSP0890-20130614|25966_1  82 ELRNDREVALTAVTQNVFVL 101
                  569**********9876655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.6
    PF05363.7  34 redreaartavtdP 47 
                  ++dre +  av+  
  MMETSP0890-20130614|25966_1 185 KNDREVTLVAVKQN 198
                  67888888888765 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.022
    PF05363.7  31 kreredreaartavtdPelPl.lrsPdllsei 61 
                  +  r+dre   +av++    l + sP+l+++ 
  MMETSP0890-20130614|25966_1 207 QELRNDREIVLAAVKNDGGALfFASPELRADQ 238
                  5569**********86655552789*999985 PP

>> PF01918.16  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0035        12       7      39 ..      12      44 ..       9     147 .. 0.82
   2 ?    0.7   0.0      0.11   3.6e+02      25      38 ..     181     194 ..     155     220 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0035
                 TTS-HHHHHHHHHHHH.....HH-.SEEEEEE- CS
   PF01918.16  7 sstpfmsyvkrvqklLekkrendkkeeVvlkat 39
                 +++++  yvk+  ++L++  e ++ +eV+l+a 
  MMETSP0890-20130614|25966_1 12 KKKKVLGYVKKGGHYLKHAPEFQDDREVILVAV 44
                 568888899999999999777777777777774 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.11
                  ...HH-.SEEEEEE CS
   PF01918.16  25 krendkkeeVvlka 38 
                    e ++ +eV+l+a
  MMETSP0890-20130614|25966_1 181 APELKNDREVTLVA 194
                  45556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.60
# Mc/sec: 1002.48
//
Query:       MMETSP0890-20130614|25990_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-92  308.0   0.5    4.3e-92  307.8   0.3    1.0  1  PF02548.10 Ketopantoate hydroxymethyltransferase
  ------ inclusion threshold ------
      0.052   12.6   0.5       0.16   11.0   0.4    1.9  1  PF13714.1  Phosphoenolpyruvate phosphomutase
      0.082   11.7   0.8       0.25   10.1   0.0    2.0  2  PF04131.9  Putative N-acetylmannosamine-6-phosphate epimerase


Domain annotation for each model (and alignments):
>> PF02548.10  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.8   0.3   9.4e-96   4.3e-92      20     260 ..       1     249 [.       1     250 [. 0.96

  Alignments for each domain:
  == domain 1    score: 307.8 bits;  conditional E-value: 9.4e-96
   PF02548.10  20 mltaydastaklvdeagvdvilVGdslgmvvlgeestlpvtleemiyhtkaVargakr..alvvadlPfgsyeaseeqalknaarllkeagadavkleggeelaetvkalvea.gipVmgHiGLtPqsvnalGgykvqGrkeeeaeklledakaleeaGafaivlEcvpeelakeiteklsiptiGiGaGaacdGqvlvleDllGl.....eeekkpkfvkkyadlaeeieealkaYaeevksgkFPae 260
                  m+t+yd+++a  vd ag+dv l+Gdslgmv+lg+ +t pv leem++h+kaV+rg ++   ++v+dlPfgsye+s+eqalk+a++ +keagadavklegg+ +a  ++++v+  gi+VmgH+GLtPq++++lGg+++qGr++ +a+++l+da al++aGafa+v Ecvp+ ++++++e+l+ip+iGiGaG+++dGqvlv++DllG      +++++pkf+k +ad+ e  + +l+a+++ev++g+FP++
  MMETSP0890-20130614|25990_1   1 MVTCYDYPSAMHVDGAGIDVALCGDSLGMVALGMATTQPVRLEEMVHHCKAVRRGLSSqgPMLVCDLPFGSYEESPEQALKSAFTCVKEAGADAVKLEGGRIMACAIEKIVNVgGIAVMGHVGLTPQKISTLGGFRAQGRTAVKARAVLDDALALQDAGAFAVVAECVPDIVGRALAENLEIPVIGIGAGSYVDGQVLVYHDLLGSlhhphHKRFVPKFCKVFADIGEASRLGLQAFKDEVQAGSFPSA 249
                  89*****************************************************875226**************************************************9737******************************************************************************************5455547999********************************97 PP

>> PF13714.1  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   3.4e-05      0.16      14     107 ..       2     100 ..       1     196 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.4e-05
    PF13714.1  14 pnawDalsariveeagfkalatsSlavaaslGvpDgelltleelleavrriaevvd...lPlivDledG.ygesped.vaetvkrliaaGavGvniEDk 107
                  + ++D  sa+ v  ag ++  ++ +   ++lG++ ++ + lee++++ +++ + ++     l  Dl  G y espe+ ++++   + +aGa +v +E  
  MMETSP0890-20130614|25990_1   2 VTCYDYPSAMHVDGAGIDVALCGDSLGMVALGMATTQPVRLEEMVHHCKAVRRGLSsqgPMLVCDLPFGsYEESPEQaLKSAFTCVKEAGADAVKLEGG 100
                  678****************88888888999**************9888877776543325567899987567776652577788889999999999976 PP

>> PF04131.9  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.13     6e+02       8      37 ..      87     117 ..      81     127 .. 0.77
   2 ?   10.1   0.0   5.5e-05      0.25       5      48 ..     152     197 ..     148     203 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.13
    PF04131.9   8 aeqaGavgiriegvedik.aikavvdlPiiG 37 
                  +++aGa +++ eg + ++ ai+++v++  i 
  MMETSP0890-20130614|25990_1  87 VKEAGADAVKLEGGRIMAcAIEKIVNVGGIA 117
                  6889999999999886654788888886554 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 5.5e-05
    PF04131.9   5 akaaeqaGavgiriegvedi..kaikavvdlPiiGivkrdlpdsev 48 
                  a+a + aGa ++ +e v di  +a+ +  ++P+iGi    + d +v
  MMETSP0890-20130614|25990_1 152 ALALQDAGAFAVVAECVPDIvgRALAENLEIPVIGIGAGSYVDGQV 197
                  8899****************666899999*******8877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.64
# Mc/sec: 1213.16
//
Query:       MMETSP0890-20130614|26039_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   12.4   0.0       0.12   11.9   0.0    1.3  1  PF06558.7 Secretion monitor precursor protein (SecM)


Domain annotation for each model (and alignments):
>> PF06558.7  Secretion monitor precursor protein (SecM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.9e-06      0.12      25     107 ..      43     125 ..      30     151 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.9e-06
    PF06558.7  25 assssrqnsakvnfsqLalleeverrpsfsv.dYWhqHAiRtviRhLsf...AlapqalpvaeeesplqvqhlaLLdtLnalLtqes 107
                  +s + ++++ +++f +  +l++ +rr   sv d++ q  +R     Lsf   Alap ++p ++ e  +++++l   d ++ +L +e 
  MMETSP0890-20130614|26039_1  43 SSQKGKKSAKRSTFIK-DALKKRQRRNEVSVeDFFVQDNVRIPTHTLSFtrqALAPSPVPSRSSE-LIRAHSLD--DIMSSVLPHEG 125
                  3333344444444554.568888****9999789***************7777899999988865.45555544..77777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 865.78
//
Query:       MMETSP0890-20130614|26048_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-11   42.1   0.1    1.2e-08   34.7   0.0    3.2  3  PF01648.15 4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> PF01648.15  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.23   3.2e+03      74     102 ..     129     160 ..      89     165 .. 0.72
   2 !    3.6   0.0    0.0038        52      72     112 ..     209     256 ..     189     257 .. 0.86
   3 !   34.7   0.0   8.8e-13   1.2e-08      12      81 ..     317     394 ..     263     448 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.23
   PF01648.15  74 artgkpslsls...wsskaadasstaklhlsl 102
                  ++tg+ +++l+   w+ +  +  +++++++sl
  MMETSP0890-20130614|26048_1 129 QKTGRARWVLDlasWRPSLGETGQEWEFLVSL 160
                  34555555555666777777777777777776 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0038
   PF01648.15  72 sdartgkpslsls.......wsskaadasstaklhlslshdgeyvvav 112
                  ++ r+gkp+ sl        + + ++  +  + +   +shdg yvv +
  MMETSP0890-20130614|26048_1 209 ERTRGGKPYSSLFyssgsmqQVDAQRGRRRPPNFNFNISHDGRYVVLA 256
                  56678888888888899999999999999****************975 PP

  == domain 3    score: 34.7 bits;  conditional E-value: 8.8e-13
   PF01648.15  12 l..rlldkllkriltesEreelaslaq.....drqeqafarlWsaKEAvyKalgvg.glplsrkelefsdartgkpsl 81 
                     +  ++l+++ l++ Ere +++ ++     + ++++f+ +W+ KEA++Ka+g g + p+++++l++ + +  +  l
  MMETSP0890-20130614|26048_1 317 EddNYWERLASSTLSQGEREFIEDHHHtcpyeQSRAERFRCIWACKEAITKARGDGlACPFKSIQLDLRHGQYDQGGL 394
                  15578999**********************************************888999********9994333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.38s 00:00:01.35 Elapsed: 00:00:01.50
# Mc/sec: 1003.27
//
Query:       MMETSP0890-20130614|26080_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.91
# Mc/sec: 186.97
//
Query:       MMETSP0890-20130614|26077_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-30  104.2   2.7    4.4e-30  104.2   1.9    2.3  2  PF03151.11 Triose-phosphate Transporter family
    1.4e-07   30.6   6.7    2.7e-07   29.6   4.6    1.5  1  PF08449.6  UAA transporter family
    1.5e-07   31.4  26.1    4.9e-05   23.2   6.4    2.8  2  PF00892.15 EamA-like transporter family


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.8      0.46   2.1e+03      89     150 ..     159     220 ..     103     221 .. 0.78
   2 !  104.2   1.9   9.6e-34   4.4e-30       1     152 [.     232     382 ..     232     383 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.46
   PF03151.11  89 vlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                  + + +  i+a++ l+   + +  ++ +   ++  vls++i+g   +++  l l+ ++ Gv+l
  MMETSP0890-20130614|26077_1 159 MGHLGTHIGAVISLGAGAVSFTHIVKASEPAVSAVLSALILGVFYSPITYLTLVPIIGGVAL 220
                  55566667777777777777788889999999999999999999999999999999998875 PP

  == domain 2    score: 104.2 bits;  conditional E-value: 9.6e-34
   PF03151.11   1 Gfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldls.sivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  Gf +a+++++++alr +l +  +   lk+ ++l+  +l++ l+++af vll+v+l++egp+  k +  ++    + s +  + + l++g  ++l+n +afl l+rv ++t+ v +++krv++i++svi+f+++i++l i+G  ia++G +lYs
  MMETSP0890-20130614|26077_1 232 GFAAAMLSNVSSALRGILAKRTMGG-LKGAENLNEQNLYALLTIIAFTVLLPVSLAIEGPAKIKGVIDAALAA-GnSPADLWKFSLFAGAYYYLYNEVAFLALGRVNPVTHAVGNTIKRVVIIIASVIAFSTPISPLGIVGSSIAIVGTLLYS 382
                  99***********************.5**********************************444444444433.358999************************************************************************8 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   4.6     6e-11   2.7e-07      32     300 ..     117     386 ..      91     388 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 6e-11
    PF08449.6  32 gnlltfvqflv..valvgllellktkklkkrkiplktYvlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkvGilllvlallldallgavqeklykkygksskemlfyshllslpfflllllsik..........tgelasavsfllkhpsvlfylllnsltqyvgikfv.flliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkallkk 300
                  ++++ + q +v   +++ l  + ++k  k  + ++kt + i++  +++++    +L+   + +  i+k++ +    +l++lilg  Ys + yl+ + i  Gv++++l++     s++        G++  +l+ + +al g++  +++  ++    e+l   +l++l+ ++++ + +           ++ + +a+ ++ + p  l+   l++ + y   + v fl + +++++t ++  t+ ++v ++ Sv+ F+ p+++  ++G ++ ++g+ll++l+k+
  MMETSP0890-20130614|26077_1 117 PWTMALLQLFVgiPYVMILWLTGLRKAPKVSRDNVKTLFPIAMGHLGTHIGAVISLGAGAVSFTHIVKASEPAVSAVLSALILGVFYSPITYLTLVPIIGGVALASLKEL----SFTWL------GFAAAMLSNVSSALRGILAKRTMGGLKG--AENLNEQNLYALLTIIAFTVLLPvslaiegpakIKGVIDAALAAGNSPADLWKFSLFAGAYYYLYNEVaFLALGRVNPVTHAVGNTIKRVVIIIASVIAFSTPISPLGIVGSSIAIVGTLLYSLAKQ 386
                  4444444443311122222222333368999999999999999999999999999999888888899**************************************99753....34444......***********************65555..55555555555555555555554222233655555555555555599997777777777766665555278899*************************************************9987 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   6.4   1.1e-08   4.9e-05       5     125 ..     102     222 ..      98     223 .. 0.88
   2 !   13.9   5.7   8.5e-06     0.039      17     125 ..     263     382 ..     241     383 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.1e-08
   PF00892.15   5 iyfvlskklles.vspltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  +y +++kk+l+    p+t++ ++l+++   ++il l+ lr+  ++ s+ +++ l+ ++    + + +   ++l  + +s++ ++ + eP+++++ls+l+lg   +++++l +v i+ Gv+l +
  MMETSP0890-20130614|26077_1 102 GYNIYNKKALNAmAIPWTMALLQLFVGIPyVMILWLTGLRKA-PKVSRDNVKTLFPIAMGH-LGTHIGAVISLGAGAVSFTHIVKASEPAVSAVLSALILGVFYSPITYLTLVPIIGGVALAS 222
                  577899999999555888888888888888888888888886.899999999999998885.8888889999************************************************986 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 8.5e-06
   PF00892.15  17 vspltitayrlliagillilllfllrep.............ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvllll 125
                  ++ + + a+  +ia+   +ll++ l  +              a  s+ d++ + l++  +  l++   f al ++++++ ++ +++  v++i++sv+ +  ++++  ++g  ++++G+ll +
  MMETSP0890-20130614|26077_1 263 LNEQNLYALLTIIAF--TVLLPVSLAIEgpakikgvidaalAAGNSPADLWKFSLFAGAYYYLYNEVAFLALGRVNPVTHAVGNTIKRVVIIIASVIAFSTPISPLGIVGSSIAIVGTLLYS 382
                  666666777777777..44444444444455888899999888999999999999999999**********************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:01.12
# Mc/sec: 832.31
//
Query:       MMETSP0890-20130614|26081_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.76
# Mc/sec: 659.00
//
Query:       MMETSP0890-20130614|26097_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-48  165.5   0.0    2.6e-48  164.3   0.0    1.5  1  PF08538.5  Protein of unknown function (DUF1749)
    6.8e-11   42.3   0.0    8.4e-11   42.0   0.0    1.1  1  PF12697.2  Alpha/beta hydrolase family
    2.6e-05   23.9   0.0    3.8e-05   23.3   0.0    1.4  1  PF12695.2  Alpha/beta hydrolase family
     0.0062   16.0   0.0     0.0096   15.3   0.0    1.3  1  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.13   11.4   0.0        0.2   10.8   0.0    1.2  1  PF05990.7  Alpha/beta hydrolase of unknown function (DUF900)


Domain annotation for each model (and alignments):
>> PF08538.5  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.3   0.0   9.5e-52   2.6e-48      10     281 ..      38     292 ..      26     296 .] 0.85

  Alignments for each domain:
  == domain 1    score: 164.3 bits;  conditional E-value: 9.5e-52
    PF08538.5  10 kgllheyaerlvafefetsgslksnallFigGLgdGlltvpyvkeladaldeagwslvqlqlsSsyggwGtgsLdrDteeleklveYlkktksGeekkekvvlmGHStGsqdvlhYltssnekerrekvdgailqapVSDreallkvleerkkveelvalakkevdkgkaeeilprelaelvfletpvsayRflsLasvegdDDyFSsdltdeklektfGkvke.pllvllsekDefvpewvdkedllerwkeavkkkewsee....sgiikgAtHn 281
                  +g l +y + l+afe  ++gs  ++ ++ igGL+dGll+ pyv el   l e g+slvq+ l Ssy  +G  +Ld D+ +l  l+  lk+      + +++ l GHStGsq + h++ + ++++  + ++  ilqa+VSDre   + l +    ++++        + + ee+lpre    ++  +p++ +Rf++L +++g DDyFSsdl+d +l++ f k ++ p ++ +s+ De+ p++ dk  l++r  +a++k+   ++      ++++A+H+
  MMETSP0890-20130614|26097_1  38 TGELFSYGNGLQAFESGPKGS--KKKMIMIGGLSDGLLACPYVPELGFCLAEEGYSLVQPILRSSYCQFGFRTLDDDVADLLDLITKLKTR-----GLNRLALCGHSTGSQICAHFVRNYINND--QLLSLVILQAAVSDRETDDNALIQ----QRAIW----LDGDTSSEEMLPREA---FW--SPITRRRFFDLHAKGGTDDYFSSDLSDHELRERFSKFHNvPCILAYSGADEYAPPSLDKLTLIQRICKAMDKEDHPDNvphiPLLLENADHA 292
                  38899***********99995..788999***********************************************************999.....499*******************999965..788999**********87664444....22222....222346678888864...45..9***********************************9887******************************9766555421113445666666 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.1e-14   8.4e-11      43     192 ..     103     257 ..      64     293 .. 0.75

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.1e-14
                  ...S--HHHHHHHHHHHHHH--....--EEEE--------HHHHHH-..---.EEEEEEE------STT.............---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT-.-S-EEEEE-----HHH..H CS
    PF12697.2  43 dydpdtledlaadlaalldalgl...rpvvlvGHSlGgavalaaaar..rpdlvrglvlidppgplpas.............alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarl.dvPvlviageaDrvvp..p 192
                  +++++tl+d++adl++l+++l +   +++ l+GHS G  + +++++   + d + +lv + ++++  +                   g ++ ++ +  r+a + ++++r+f++l ++   ++++ +d            +d++lre+++++  vP+ + +++aD+++p   
  MMETSP0890-20130614|26097_1 103 QFGFRTLDDDVADLLDLITKLKTrglNRLALCGHSTGSQICAHFVRNyiNNDQLLSLVILQAAVSDRETddnaliqqraiwlD----G-DTSSEEMLPREAFWSPITRRRFFDLHAKGGTDDYFSSDL-----------SDHELRERFSKFhNVPCILAYSGADEYAPpsL 257
                  37899**************99998788******************99444446666666666665544457777666533220....2.222233335677788888888888888888888888765...........9***********78**************9653 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.4e-08   3.8e-05      18     119 ..      81     257 ..      54     292 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
    PF12695.2  18 laealakrgfavvav.......dlpghgasegaaaakrvlaadll..dleriilvGhSlGGgvalelagrd...drvkglvllapf.....pdgedlakltl................................................................pvllihGtrDgvvppee 119
                  l   la++g++ v +       ++ ++   +++a++ +++  +l+  +l+r++l GhS G+++ +++++++   d++ +lv+l++      +d+++     l                                                                p+ l +  +D+++pp+ 
  MMETSP0890-20130614|26097_1  81 LGFCLAEEGYSLVQPilrssycQFGFRTLDDDVADLLDLI-TKLKtrGLNRLALCGHSTGSQICAHFVRNYinnDQLLSLVILQAAvsdreTDDNA-----LiqqraiwldgdtsseemlpreafwspitrrrffdlhakggtddyfssdlsdhelrerfskfhnvPCILAYSGADEYAPPSL 257
                  5567999********7777555555555557777777777.444479**********************544348888999888852333322222.....2333346777777777777888889999999999888888888888888888888888888888888888888888888765 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-06    0.0096      26     113 ..     108     213 ..      94     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-06
                  SHHHHHHHHHHHHHHSTSSS...EEEEE-B---HHHHHHHHHCGG...GEEEEEEESB--................HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHH CS
   PF00561.15  26 ttddlardleavldalglkk...ltlvGhSmGGmialayaaeypd...rvkamvllgtva................vlsdglssdvlnrgstltlladnvagrlskgikp 113
                  t dd+++dl  ++ +l+ +    l+l GhS G+ i++++   y       + ++l ++v                  + d +s+ +l+r    +++++ +++r + +  +
  MMETSP0890-20130614|26097_1 108 TLDDDVADLLDLITKLKTRGlnrLALCGHSTGSQICAHFVRNYINndqLLSLVILQAAVSdretddnaliqqraiwLDGDTSSEEMLPR----EAFWSPITRRRFFDLHA 213
                  67899999999999998888888******************998888566666677777699999999988888886666666666665....66666666655544444 PP

>> PF05990.7  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.2e-05       0.2      78     141 ..     114     170 ..     109     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.2e-05
    PF05990.7  78 dalekllrylatkksakkihllaHSmGtwlvlealrqlaieadepaleakikeviLaApDidvd 141
                  ++l +l+++l+t  + +++ l  HS G+++ ++ +r+  ++++       ++ viL A+  d++
  MMETSP0890-20130614|26097_1 114 ADLLDLITKLKTR-GLNRLALCGHSTGSQICAHFVRNYINNDQ------LLSLVILQAAVSDRE 170
                  5677889999988.9*********************9988886......566777777655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.66
# Mc/sec: 1074.73
//
Query:       MMETSP0890-20130614|26104_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-09   36.6   0.0    6.5e-09   36.6   0.0    1.1  1  PF13602.1 Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.15   11.8   0.0    1.2  1  PF04800.7 ETC complex I subunit conserved region


Domain annotation for each model (and alignments):
>> PF13602.1  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   9.6e-13   6.5e-09      83     121 ..      49      87 ..       2      88 .] 0.76

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 9.6e-13
    PF13602.1  83 eleelaalveaGklkpvvdrvfpLeeaaeAhrrlesgra 121
                  + +e+++++++G l + vd++fpL++a+e h++le+g++
  MMETSP0890-20130614|26104_1  49 RANEIMGWLQSGDLAVSVDTTFPLDQAPEGHKYLEAGKS 87 
                  269****************99***************986 PP

>> PF04800.7  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05      0.15      22      56 ..      38      71 ..      19      83 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
    PF04800.7 22 kWklefeasarwenpLmGWtssaDplsndveLtFe 56
                 +++++  +     n++mGW  s+D+    v+ tF+
  MMETSP0890-20130614|26104_1 38 DYTVDRVELLYRANEIMGWLQSGDLAVS-VDTTFP 71
                 5555555666778***********9984.888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       129  (0.00943534); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 314.75
//
Query:       MMETSP0890-20130614|26111_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-22   79.7   1.1    1.9e-22   79.5   0.8    1.1  1  PF01233.14 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01233.14  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.8   1.4e-26   1.9e-22       4      67 ..      26      89 .]      23      89 .] 0.97

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 1.4e-26
                 -S-...CCGS-SS----STTEE-----TTSHHHHHHHHHHHHHHSSCTTTTTEEE---HHHHHH CS
   PF01233.14  4 idklktlddvkeeplsllagfewstldiddeeqlkelykllaenyvedddamfrfdyskeflkw 67
                 i+ +k ++++++ep+ +++gf+w+ ld+ +   l+e+y ll+enyvedddamfrfdysk+fl+w
  MMETSP0890-20130614|26111_1 26 IEANKPMEELRQEPFKMPDGFQWCELDVTEAMILDEVYILLNENYVEDDDAMFRFDYSKQFLEW 89
                 7889999********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 313.64
//
Query:       MMETSP0890-20130614|26135_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-60  203.5   0.1    1.4e-60  203.2   0.1    1.1  1  PF00071.17 Ras family
    6.5e-20   71.6   0.0    1.3e-19   70.7   0.0    1.5  1  PF08477.8  Miro-like protein
    1.8e-13   49.9   0.1    2.3e-13   49.6   0.1    1.1  1  PF00025.16 ADP-ribosylation factor family
      8e-07   28.3   0.0    9.3e-07   28.1   0.0    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
    1.9e-05   24.5   0.0    3.1e-05   23.8   0.0    1.3  1  PF01926.18 50S ribosome-binding GTPase
    0.00055   19.9   0.0     0.0012   18.8   0.0    1.5  1  PF13401.1  AAA domain
    0.00056   19.2   0.1     0.0026   17.1   0.0    1.9  1  PF00009.22 Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.011   16.0   0.0       0.08   13.2   0.0    2.0  2  PF13191.1  AAA ATPase domain
      0.034   12.0   0.0      0.041   11.7   0.0    1.1  1  PF13844.1  Glycosyl transferase family 41
      0.043   12.8   0.0      0.084   11.9   0.0    1.5  1  PF03193.11 Protein of unknown function, DUF258
       0.12   11.2   0.2       0.28    9.9   0.0    1.6  2  PF10236.4  Mitochondrial ribosomal death-associated protein 3


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.2   0.1   1.1e-63   1.4e-60       1     161 [.       4     164 ..       4     165 .. 0.99

  Alignments for each domain:
  == domain 1    score: 203.2 bits;  conditional E-value: 1.1e-63
                  EEEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTTEEE---BTTTTTTHHHHHHHHHHHHH CS
   PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                  K +++Gd++vGK++lll+f++++F+  +e Tigv+f  + ie+d++++kl+iwDTAGqe f+s++++yyr+a g+llvydit+re+f+++++w+ee ++  ++n++++L+GnK+Dle++ravs +ege++a+++gl f+etSAkt++nve+af + +++i+
  MMETSP0890-20130614|26135_1   4 KYIIIGDTGVGKSCLLLQFTDKRFQAIHELTIGVEFGARMIEIDDRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFKHLTRWLEEARQNSNSNMVVMLIGNKADLEHRRAVSVDEGERFARDHGLIFMETSAKTAMNVERAFIRTADSIY 164
                  89********************************************************************************************************************************************************9998886 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0     1e-22   1.3e-19       2     119 .]       5     118 ..       4     118 .. 0.91

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 1e-22
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelrklgkk.ipvilvgnklD 119
                   +++Gd+gvGKs ll q++ + f+   + e ++g + +   +e+d  + +l++wd++g+e + +      + a+++llvyd+t++e+++++     wl+e+r+  ++ ++v+l+gnk D
  MMETSP0890-20130614|26135_1   5 YIIIGDTGVGKSCLLLQFTDKRFQ--AIHELTIGVEFGARMIEIDDRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFKHL---TRWLEEARQNSNSnMVVMLIGNKAD 118
                  689*********************..999999999999999999999999**************88888*********************7...6788888875555599*******98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.1   1.8e-16   2.3e-13      16     137 ..       4     131 ..       2     169 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.8e-16
                  EEEEE--TT---HHHHHHHHHS-EEE.E-S--S-E..EEEEEE..TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT..---HHHHH CS
   PF00025.16  16 rilllGLDnaGKtTilkklkleelvt.tvPTigfn..veelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpe..alseeelr 137
                  + +++G  + GK+ +l ++++++++  +  Tig +   + +ei  +++k+++wD  Gqe+ R++ ++Y++   + + v D + re +++  + L++  + + ++++++++++NK Dl++  a+s +e +
  MMETSP0890-20130614|26135_1   4 KYIIIGDTGVGKSCLLLQFTDKRFQAiHELTIGVEfgARMIEIddRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFKHLTRWLEEARQ-NSNSNMVVMLIGNKADLEHrrAVSVDEGE 131
                  789999999**************998545677754113444444499***********************************************99755.55667777778*****9752255655544 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   7.5e-10   9.3e-07       2     127 ..       5     123 ..       4     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 7.5e-10
    PF04670.7   2 lLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrfl.gnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesreleedlekfqeileallqyspeakvfvli.hKmDlised 127
                   +++G +g GK+++    F +   + + +L++ ++     +++  +++kl++wD+ Gqe+f + +    +++     ++l+ V Di+    +e+++++++ le ++q+s    v +li +K+Dl + +
  MMETSP0890-20130614|26135_1   5 YIIIGDTGVGKSCL-LLQFTDKRFQAIHELTIGVEFGARMIEIDdRQIKLQIWDTAGQESFRSIT----RSYYRGAAGALL-VYDIT---RRETFKHLTRWLEEARQNSNSNMVVMLIgNKADLEHRR 123
                  6899********96.578999999999999999999888888752689**********9998875....555555666655.99***...789************************97799976532 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.5e-08   3.1e-05       3     110 ..       6     110 ..       4     117 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.5e-08
                  EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE...ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHH...H..TCCCEEE CS
   PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrditenev...kkek...iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasavlkeadkellnel...e..akkplil 110
                  +i+G + vGKS L+ + t++   + ++++  T  ++ ++    ++++   ++++Dt+G           e++++++++  + a ++llv d+++   e+ k+l ++l   +   ++++++
  MMETSP0890-20130614|26135_1   6 IIIGDTGVGKSCLLLQFTDK---RFQAIHELTIGVEFGARmieIDDRqikLQIWDTAG----------QESFRSITRSYyRGAAGALLVYDITR--RETFKHLTRWLeeaRqnSNSNMVV 110
                  89****************54...67788888888844333356333345468******..........23677788888899*********654..446788888884441443444444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.5e-07    0.0012       8      99 ..       6     133 ..       5     170 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 9.5e-07
    PF13401.1   8 vvtGesGvGKTtllrrlarqldeeaeaae.............karvvfveapastspkellqkllsalglpakg.....rltteellealqealrrrrt....................rlliiDEaqrL 99 
                  +++G +GvGK++ll ++ +++ + ++                + r+++ ++ + + + ++ + + + + ++a g       t++e +++l++ l+++r+                    r + +DE +r+
  MMETSP0890-20130614|26135_1   6 IIIGDTGVGKSCLLLQFTDKRFQAIHE-LtigvefgarmieiDDRQIKLQIWDTAGQESF-RSITRSYYRGAAGallvyDITRRETFKHLTRWLEEARQnsnsnmvvmlignkadlehrRAVSVDEGERF 133
                  89*****************98655444.35999999999999888887777777744444.444554444455556667555555555555555555555555555555555555555588888887777 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.1e-06    0.0026      57     144 ..      38     129 ..       2     169 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.1e-06
                  SSEEEEEET.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-..S-HHHH..HHHHHHHHTT--EEEEEE-TTSTCHHHHHHHH CS
   PF00009.22  57 ksaaisleketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqTe..evlrlakklgvkiivviNKiDrveaeleeive 144
                  + +a  +e + ++ ++++ Dt G ++F + + +  r + ga+lv d +     +  T+  e +r+ ++ ++ ++++ NK D+ + ++  + e
  MMETSP0890-20130614|26135_1  38 EFGARMIEIDDRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRetFKHLTRwlEEARQNSNSNMVVMLIGNKADLEHRRAVSVDE 129
                  44444444348889999************99999************9966446666651133334444444455566****87655544433 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.4e-05      0.08      27      66 ..       6      51 ..       5     107 .. 0.64
   2 ?    0.8   0.0      0.41   5.1e+02       5      31 ..      86     115 ..      83     117 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.4e-05
    PF13191.1 27 lvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..........l 66
                 +++G+ G+GKS Ll ++ +     r++ +++ +  +++           +
  MMETSP0890-20130614|26135_1  6 IIIGDTGVGKSCLLLQFTDK----RFQAIHELTIGVEFGarmieiddrqI 51
                 59**************5544....55555555554444433444555542 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.41
    PF13191.1   5 RereleaLlaalrrvsegsp...lllvtGp 31 
                  R + ++ L++ l+++++ s    ++ ++G+
  MMETSP0890-20130614|26135_1  86 RRETFKHLTRWLEEARQNSNsnmVVMLIGN 115
                  556788999999997765556766778886 PP

>> PF13844.1  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.3e-05     0.041     154     268 ..      87     200 ..      78     204 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.3e-05
    PF13844.1 154 aqmlkhlkerviveekddarvvdneivvnavdlkplldkve..ekkivkekveeagskvdsv..kaevklpvlevptaepvkemiasgsiavtvngvsvqnGlatsqtnskaatGeevp 268
                  ++ +khl++    e ++++   ++++vv  +  k+ l++ +  +++  ++  +++g    ++  k+++++    + ta+++ ++i++g   vt +   ++ G++ ++ ++ ++    +p
  MMETSP0890-20130614|26135_1  87 RETFKHLTRWLE-EARQNS---NSNMVVMLIGNKADLEHRRavSVDEGERFARDHGLIFMETsaKTAMNVERAFIRTADSIYNQIQTGAYDVTDEAYGIKVGVTAEKSHNTSS-SSALP 200
                  567888876543.334443...467888888888888865511456667777888766555500455555556799***************************9999886554.44555 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.7e-05     0.084      39      67 ..       6      34 ..       3      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.7e-05
                 EEE-------HHHHHHH--------S--- CS
   PF03193.11 39 vlvGqSGvGKSsLinallpeldlkvgevs 67
                 +++G +GvGKS L+ +++ +  ++++e++
  MMETSP0890-20130614|26135_1  6 IIIGDTGVGKSCLLLQFTDKRFQAIHELT 34
                 89************999999888888765 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00023      0.28      25      43 ..       4      22 ..       2      25 .. 0.93
   2 ?   -2.5   0.0       1.4   1.7e+03       4      27 ..      86     110 ..      84     117 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00023
    PF10236.4 25 rvvltGekgsGKSvlLaqa 43
                 ++++ G++g+GKS lL+q 
  MMETSP0890-20130614|26135_1  4 KYIIIGDTGVGKSCLLLQF 22
                 89***************96 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.4
    PF10236.4   4 Reetlel.lkklkkaekkkktkrvv 27 
                  R+et++  ++ l++a ++++ + vv
  MMETSP0890-20130614|26135_1  86 RRETFKHlTRWLEEARQNSNSNMVV 110
                  6666665366677775554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      498  (0.0364248); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 555.52
//
Query:       MMETSP0890-20130614|26137_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   83.7   8.9    1.1e-23   83.7   6.2    2.4  2  PF06813.8  Nodulin-like
    1.9e-11   43.2  37.3    6.6e-07   28.2  13.3    2.6  3  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF06813.8  Nodulin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   6.2   1.6e-27   1.1e-23       1     173 [.       8     182 ..       8     264 .. 0.81
   2 ?   -0.1   1.6      0.06   4.1e+02     106     177 ..     324     398 ..     305     452 .. 0.58

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 1.6e-27
    PF06813.8   1 rWlvlvaaiwiqsvaGanytFslySsalKsvlgisQkqlnlLsvakdlGkalGllsGlaaevlplwvvllvgaalglvGYgvvwLvvtkkia..klpywllfllivlaansecwlnTaslvtciknFpesrgvvvgllkgyaglsaaiytqlyeailss.daksllLlvalvplvv 173
                  rW vl +a++  +++G+ y F++ySsalK+ l+isQ+ l + s+a+++G+  G l+G++++++ +     vga    +GYg +wL v+      +   ++++++ ++ + +   ++ a++ +c+k Fp +rg vvgllk+  gl++ ++   +  +++s     +l l+a+  ++v
  MMETSP0890-20130614|26137_1   8 RWHVLESALLTIVASGTVYAFGAYSSALKKKLEISQTALDISSLASNVGNYNG-LPGFICDQIGSVKSAKVGAYCIGLGYGALWLLVAYGSLrgRSAAIAVCFCNFVWGFGSGLIDVACIAVCVKLFPDQRGRVVGLLKSLYGLASSLIVLFAAYLVGSiTFIGVLALLAFTLPLV 182
                  8**************************************************99.59*******************************9755411345688999999*****************************************99998888888755455565666555554 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.06
    PF06813.8 106 aansecwlnTaslvtciknFpesrgvvvgllkgyaglsaai...ytqlyeailssdaksllLlvalvplvvslvl 177
                  a+++   +n a  +++ +n  +  + v+  l + a   + +   ++    a +++ ++ ll+l alv  +  lvl
  MMETSP0890-20130614|26137_1 324 AGQGLMVINNAGQILAARNATSATQSVAVALISVANCLGRLgtgFAADRIATYGKPRTALLVLTALVGCFAMLVL 398
                  455555555555555555554443333322223322223330002222334444455555555555554444443 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2  13.3   9.6e-11   6.6e-07      15     254 ..      28     262 ..      14     266 .. 0.59
   2 !   19.4   9.5   4.9e-08   0.00033     160     331 ..     254     435 ..     248     453 .. 0.62
   3 !   15.2   9.5     9e-07    0.0061      16     160 ..     329     498 ..     310     504 .. 0.61

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 9.6e-11
   PF07690.11  15 lgpalplalaedlgispseigwlltlyslgyaiaslla..GrlsdrfG....rrr.vlllglllfalglllllfa....sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllll...prepperkrkspaeelrkepaplvp......awklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgll 254
                  +g+  + al++ l is +++ +     sl++ +++  +  G++ d +G    ++   +++gl   al+ ll +++     s   +++++ ++ G+g+g++  a++a+ +++fp+ +rgr++gll + ++l++ l  l++++l+ s+ +      +++l+lla+ l   l+     + ++    ++ ee    +  ++p       + ++ +++    +l+a+++++++++++++ + +   +vl+l    + +g++lgl+
  MMETSP0890-20130614|26137_1  28 FGAYSS-ALKKKLEISQTALDI----SSLASNVGNYNGlpGFICDQIGsvksAKVgAYCIGLGYGALW-LLVAYGslrgRSAAIAVCFCNFVWGFGSGLIDVACIAVCVKLFPD-QRGRVVGLLKSLYGLASSLIVLFAAYLVGSITF------IGVLALLAFTL--PLVnasGLSLSNYTELNQLEE---DNDDIIPdteasaRLNKIIRRV----FLLASCTGSVATAAVIAPTIFKQSKVLDLA---VAIGVVLGLF 262
                  344444.667777777666666....444444444444448888888733334555555555555555.3333324566333446*****************************.****************************55544......44444444332..222112222222222222223...3334444444444567888888....889999996555553332222246666666...5555555554 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4.9e-08
   PF07690.11 160 ilsllaavlvllllprepperkrkspaeel..............rkepaplvpawklllkppvlwillialllfffvfsg...lltllplylqevlglspglllaglllgllaligaigalllgrlsdr...lgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalasdlap 331
                  +++++++++  ++  re++++k++ +++ l                +++ ++p +++l++   lw  l++++++  + +g   +     +     ++ +++  +++  ++l++++++ g+l +g+ +dr   +g+ r+ ll+l +l+ ++++l+l     +   +ll+++++G  +g  +++l +++sdl++
  MMETSP0890-20130614|26137_1 254 AIGVVLGLF--FVSHRENTTNKKNIQQTPLmshaqqpettkentLAGTQDATP-YQALRRIE-LW--LALAAIVPSAGQGlmvINNAGQI--LAARNATSATQSVA--VALISVANCLGRLGTGFAADRiatYGKPRTALLVLTALVGCFAMLVLYISRVNIGGALLGVIIAGASYGALWTLLPTITSDLFG 435
                  344444443..333444444444444444488887777666665555555566.88888888.55..33333332233332323333333..33333332335666..99999999999**********777776666666666666666666666666899999999*********************993 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 9e-07
   PF07690.11  16 gpalpl.alaedlgispseigwlltlyslgyaiasllaGrlsdrf...G.rrr.vlllglllfalglllllfa.sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslg.....................WravFlilai 160
                  +++  +  +  + ++++++++ +++l s++ +++ l +G+ +dr+   G +r  +l+l++l+ ++++l+l ++  ++    l++ +++G+ +gal+++  ++++d+f      r  + ++++ ++ ++   l++ +la + ++                     + ++Fli a+
  MMETSP0890-20130614|26137_1 329 MVINNAgQILAARNATSATQSVAVALISVANCLGRLGTGFAADRIatyGkPRTaLLVLTALVGCFAMLVLYISrVNIG-GALLGVIIAGASYGALWTLLPTITSDLFGL---QRFASNYMLCLPFIILASLLFSTVLAaTVYSdhtnddddsndddntctgaacYDLTFLITAG 498
                  333333344555678899999999999999999999999999988666645554555555555555333333366677.688888899999999999999999999987...33444444455555555555555444222223334555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       746  (0.0545641); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.44s 00:00:01.39 Elapsed: 00:00:00.89
# Mc/sec: 1359.73
//
Query:       MMETSP0890-20130614|26150_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   15.5   0.8      0.011   15.3   0.5    1.1  1  PF11527.3 The ARF-like 2 binding protein BART
  ------ inclusion threshold ------
      0.041   13.8   0.0      0.064   13.2   0.0    1.3  1  PF05864.7 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
       0.05   13.7   0.5      0.066   13.3   0.3    1.3  1  PF07342.6 Protein of unknown function (DUF1474)


Domain annotation for each model (and alignments):
>> PF11527.3  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   2.4e-06     0.011       7     102 ..       2     106 ..       1     108 [] 0.81

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.4e-06
                  HH---HHHHTS-HHHHHHHHHHHHHHHHTT--S......S-SSTTHHHHHHHHHHHHHHHHHHHHH.-------THHHHH.....SS-GGG----HHHHHHGGG- CS
    PF11527.3   7 wvlesileflaspvWkapiqdFieekcivFdde......eenkleyteihkeYkelvekllesfle.elgispeqfeeac..lsesksknqaakkifqqllaaeD 102
                   vle ++++ ++ +  +  ++F e++   F d        e +++ ++++ eY    ek +es ++   +++  +f  +   + + +s+++ ++ ++q ll++ +
  MMETSP0890-20130614|26150_1   2 DVLEIVEKICTNLELATEFEEFAESNIKPFLDYdedegkGEHSHDMYKVYLEYLDHFEKRIESEINkHSSVDVPSFYRKAreILDLSSPKNSHRFFLQALLSTAE 106
                  58899999999999999*************77655667778999999****************999888888888877776655666777777777777777655 PP

>> PF05864.7  Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.064      30      61 ..       2      33 ..       1      35 [. 0.95

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
    PF05864.7 30 kvlktvknkCCRlkLstqiepqRnLtvqPlLD 61
                 +vl+ v++ C  l L+t  e      ++P LD
  MMETSP0890-20130614|26150_1  2 DVLEIVEKICTNLELATEFEEFAESNIKPFLD 33
                 89*****************************9 PP

>> PF07342.6  Protein of unknown function (DUF1474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.5e-05     0.066      47      94 ..      27      75 ..       4      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
    PF07342.6 47 likegasyherrikndqvvdllhlylkefdeilkkfk.eiekassenfg 94
                  ik  + y e   k ++  d+ ++yl+ +d+  k+++ ei+k ss +++
  MMETSP0890-20130614|26150_1 27 NIKPFLDYDEDEGKGEHSHDMYKVYLEYLDHFEKRIEsEINKHSSVDVP 75
                 57777899***************************9659******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.54
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|26158_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   18.2   0.0      0.002   17.6   0.0    1.3  1  PF08282.7 haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-07     0.002       2      43 ..      55     104 ..      54     120 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-07
                  EE------S-........TTS---HHHHHHHHHHHHTT-EEEEEESS-HH CS
    PF08282.7   2 asDlDGTLln........sdkkiseetkeaikklqekgikvviaTGRsls 43 
                  ++D+D TL +        ++ k  ++t++ +k+++ +g+++++ T+R ++
  MMETSP0890-20130614|26158_1  55 CFDIDNTLFTsptipgayHTCKPIPRTINFLKQVHAAGHYIILGTARRMR 104
                  79**************87777788***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|26168_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 670.29
//
Query:       MMETSP0890-20130614|26172_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.60
# Mc/sec: 1609.55
//
Query:       MMETSP0890-20130614|26186_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-25   89.9   3.5    1.9e-23   83.2   2.5    2.2  1  PF13460.1  NADH(P)-binding
    1.2e-07   31.2   0.3    2.2e-07   30.4   0.2    1.5  1  PF01370.16 NAD dependent epimerase/dehydratase family
    2.7e-06   26.6   1.1    1.1e-05   24.6   0.8    1.9  1  PF05368.8  NmrA-like family
    1.6e-05   23.6   0.7    2.4e-05   23.0   0.5    1.2  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    0.00072   19.3   2.0     0.0017   18.1   1.4    1.7  1  PF01113.15 Dihydrodipicolinate reductase, N-terminus
     0.0011   17.8   1.5     0.0017   17.2   1.1    1.3  1  PF02719.10 Polysaccharide biosynthesis protein
     0.0065   16.2   0.5      0.012   15.4   0.4    1.5  1  PF00106.20 short chain dehydrogenase
  ------ inclusion threshold ------
      0.015   14.8   0.3      0.025   14.1   0.2    1.3  1  PF08659.5  KR domain
      0.025   14.7   0.3      0.047   13.8   0.2    1.5  1  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain
      0.064   13.0   2.1       0.16   11.6   1.4    1.6  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
      0.071   11.9   0.4        1.1    8.0   0.3    2.4  1  PF07993.7  Male sterility protein


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   2.5   1.5e-26   1.9e-23       1     182 [.      62     282 ..      62     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 1.5e-26
    PF13460.1   1 IaviGAtGktGrrivkellarg.hevtalvRnpsklpe...................ssgvtivkkDlfdl..edlaeala..gvdvvvdafgarpe............dregvkhlldalkaagvrrlvvvsaaglyr...dkpgl..felldkplfkeylrakaaaeelleasgldwtivrPaalfeaeettyelitegdpagesaisraDvAaalvdele 182
                  I+v GAtG+tGrriv++l + + + v+  vRn +k+++                      v+ +k+D+ +    ++ ++++  ++d++++a+g +p+            d  g+ +l+da+ aa+++++v+vs+  ++       ++   + + +++f+ +l +k  ae+ l+++++d+tivrP++l  ++  ++  ++++d+ + ++isr+ vA+++v  l 
  MMETSP0890-20130614|26186_1  62 ILVAGATGQTGRRIVERLSKIDgIAVVGGVRNIEKATKslsedsivvrgamvqnvgsVAPVDLLKIDVVQDtlDQVTSTMSgkNFDALIIATGFVPSspfkmkeaahavDNVGTIKLIDAAVAAKIPKIVMVSSILTNGrnwG--QEnsPGFVVTNAFGGVLDEKIVAENYLRNTNIDYTIVRPGGLKAKPPVGALQVSKEDTLNAGEISRDLVADVCVASLF 282
                  9*****************98666*********99988889655554444444332222334444455422222445555553336666666655555888887777666699*********************9998886431..2222344889999************************************************************98775 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   1.8e-10   2.2e-07       1     123 [.      62     202 ..      62     246 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.8e-10
                  EEEE--------HHHHHHHHH-TE.EE..EESSCSTCCCCCCHHH..............TBEEEB--TT..-HHHHHHHHHHHT.SEEEE--S---.HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---B CS
   PF01370.16   1 ilVtGatGfiGsalveallekgye.vv..nlirrtrseslatvri..............rvelveldlt..dkdalerlfaeeqpdaVihlAaesg.vdassedpadfieanvegtlnlleaarkagvkrflfasSsevygkd 123
                  ilV+GatG+ G+ +ve+l + +   vv  + ++++ ++sl +++i               v+l ++d+     d+++  ++++++da i + +++      ++ +++    + +gt +l++aa +a++++++ +sS  + g++
  MMETSP0890-20130614|26186_1  62 ILVAGATGQTGRRIVERLSKIDGIaVVggVRNIEKATKSLSEDSIvvrgamvqnvgsvaPVDLLKIDVVqdTLDQVTSTMSGKNFDALIIATGFVPsS--PFKMKEAAHAVDNVGTIKLIDAAVAAKIPKIVMVSSILTNGRN 202
                  8*****************997666366886666666666666666999******99999888999998864457899999999***********8533..44777777777789**********************7776666 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.8   9.2e-09   1.1e-05       1     143 [.      62     244 ..      62     248 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 9.2e-09
                  EEESS----HHHHHHHHHHH.---EEEEE-S--..............---HHHHH.HHSTTEEE---TT....-HHHHHHHH----EEEE---TT-...........--TTT---HHHHHHHH---SEEEE.EE---GG..G-.------T.......TTHHHHHHHHHHHH----EEEEE-- CS
    PF05368.8   1 ilviGaTGrqGksvvraslk.aghkvralvRdl..............kselaksl.kaaGvelvegdld....dkeslvealkgvdvvfsvttfve...........skeiedgkklvdAakeaGvkrfvp.Selgndnd.rsnaeePavp.......lfdeKaeveeyiralgipyTfvyag 143
                  ilv GaTG+ G+++v+ + k +g  v   vR+               ++++++++ + a+v l++ d+     d+       k+ d+ +++t+fv                   +kl+dAa++a ++++v  S++  + +   + + P+ +       ++deK+  e+y+r+ +i yT+v++g
  MMETSP0890-20130614|26186_1  62 ILVAGATGQTGRRIVERLSKiDGIAVVGGVRNIekatkslsedsivvRGAMVQNVgSVAPVDLLKIDVVqdtlDQVTSTMSGKNFDALIIATGFVPsspfkmkeaahAVDNVGTIKLIDAAVAAKIPKIVMvSSILTNGRnWGQENSPGFVvtnafggVLDEKIVAENYLRNTNIDYTIVRPG 244
                  89***************9999************77776666666666555666552335666655554355444444444557889999999998888998766532222223579*********99887525555554424555667654223333357********************986 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.5   1.9e-08   2.4e-05       1     124 [.      63     203 ..      63     210 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.9e-08
   PF01073.14   1 lVtGgsGFlGrrlvreLlelee...lkevrvldlrespelleel..sklqvkt........vlegDvtdk..ekleealeg..vdvvihtaaiidvlgkaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaevvgpnv 124
                  lV G++G  Grr+v++L +++    +  vr +++++++  +++   +   v++        +l+ Dv +   ++++  ++g   d++i   + + +     ++  ++v   GT ++++a+v a+++++v +Ss+   g n 
  MMETSP0890-20130614|26186_1  63 LVAGATGQTGRRIVERLSKIDGiavVGGVRNIEKATKSLSEDSIvvRGAMVQNvgsvapvdLLKIDVVQDtlDQVTSTMSGknFDALIIATGFVPSSPFKMKEAAHAVDNVGTIKLIDAAVAAKIPKIVMVSSILTNGRNW 203
                  799*****************984345578999977766665533112233333455445556777776542245666665422467777779999988999999*****************************97776665 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.4   1.3e-06    0.0017       2     115 ..      61     169 ..      60     178 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-06
                  EE--B--------HHHHHHHH.---EE-EE-----...........................-EE--S--BB-S-GGGHHHHHHHHHHHT---EE---S--HHHHHHHHHHTTT CS
   PF01113.15   2 kvavvGasGrmGkevikaieeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklalekgvklViGTTGlseeelaeleelakk 115
                  k++v+Ga+G+ G+++++ +++ +++ +v++v + e++++  +  ++     +  a+ +++ +v       iD    + + ++++++  k+ ++ i  TG+ ++   +++e+a+ 
  MMETSP0890-20130614|26186_1  61 KILVAGATGQTGRRIVERLSKIDGIAVVGGVRNIEKATKSLSEDSI----VVRGAMVQNVGSVAPVDLLKIDVV-QDTLDQVTSTMSGKNFDALIIATGFVPSSPFKMKEAAHA 169
                  89****************************9998733222111111....222223334444444333446665.666677777777777777777778877777777777665 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.1   1.4e-06    0.0017       1     128 [.      62     195 ..      62     196 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.4e-06
   PF02719.10   1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeieke......leeelkkeklkve..ivpvigdvrdk.erleealeelkvdvvfhaAAlKhVPlveenpleavk.tNvlgtenvieaaieagvekvvliSt 128
                  +lv+Ga+G  G+++v+++ k   ++ +  + + E++ ++++++          + ++  +v    +  i  v+d+ ++++++++  + d+++   A+  VP+  +++ ea +    +gt ++i+aa++a++ k+v++S+
  MMETSP0890-20130614|26186_1  62 ILVAGATGQTGRRIVERLSKIdGIAVVGGVRNIEKATKSLSEDsivvrgA---MVQNVGSVApvDLLKIDVVQDTlDQVTSTMSGKNFDALII--ATGFVPSSPFKMKEAAHaVDNVGTIKLIDAAVAAKIPKIVMVSS 195
                  89******************966777778999999999999997754321...2222111220022335556664478889999888888775..5667999999998886524668********************96 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   9.6e-06     0.012       2     136 ..      61     196 ..      60     218 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.6e-06
                  EEEE---------HHHHHHHHHSSEEEEEEESS...SHHHHHHHHHHHH.H---EEEEEE.--TTSHHHHHHHHHHHH..HH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHHHH---EEEEEEC CS
   PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrr..edapgaaeliaele.algaevtvva.cDvadrdalaallaeir..kalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltldadlgafvlfSSv 136
                   +l+ G++g  G+ ++++L +  +  +v   r+  ++++ ++e    ++ a  ++v  va +D+ + d ++  l+++    ++++ d+++ + g ++++p++       e+  a+   g++ l  ++  a+   +v++SS+
  MMETSP0890-20130614|26186_1  61 KILVAGATGQTGRRIVERLSKIDGIAVVGGVRNieKATKSLSEDSIVVRgAMVQNVGSVApVDLLKIDVVQDTLDQVTstMSGKNFDALIIATGFVPSSPFKMK-----EAAHAVDNVGTIKLIDAAVAAKIPKIVMVSSI 196
                  58********************777777777775533333333322233355566666666***************9976678899****99999998888775.....45555555566666666666667777777776 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2     2e-05     0.025       3     147 ..      62     206 ..      61     227 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-05
                  EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EE....EEE--TTSHHHHHHHH----TTS...---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC----EEEEEEEGGGT------- CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevt....vvaaDvadrdavealleeveaee..pplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhelladepldffvlfSSiagvlgsagqa 147
                   Lv+G++g+ G++++++L +     +v   r+  +++++    +++  +ga v+    v+++D+ + d v+ +l++v+ ++  ++ ++ + a g + +++++ ++a++  +       G+  L  +    ++  +v++SSi +   + gq 
  MMETSP0890-20130614|26186_1  62 ILVAGATGQTGRRIVERLSKIDGIAVVGGVRNI-EKATKSLSEDSIVVRGAMVQnvgsVAPVDLLKIDVVQDTLDQVTSTMsgKNFDALIIATGFVPSSPFKMKEAAHAVD-----NVGTIKLIDAAVAAKIPKIVMVSSILTNGRNWGQE 206
                  59*****************87777777777773.333333345677777886653333889****************9999889999999999999999998887766444.....34666666666678899999999998765555554 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.8e-05     0.047       1      73 [.      61     133 ..      61     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.8e-05
                  EEEEB--------HHHHHHHCTSSEEEEEEEETTTT---BHHHHSGGGCCCCCEBEEEGCGCCCTC-SEEEE- CS
   PF01118.19   1 kvaivGatGyvGqellrlLeehpelelvalvassrsaGkklaeahkaleegkdlvledadeeelkevdivfla 73 
                  k+ + GatG +G++++++L++ + + +v  v + ++a k l+e    +++    ++ ++++ +l ++d+v   
  MMETSP0890-20130614|26186_1  61 KILVAGATGQTGRRIVERLSKIDGIAVVGGVRNIEKATKSLSEDSIVVRGAMVQNVGSVAPVDLLKIDVVQDT 133
                  6899*****************9999999999999999999999877666666666666778888888887655 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.4   0.00013      0.16      90     188 ..     122     224 ..      52     237 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00013
                  E.......EEEEEEEEEEEETEEEEEEESEEEE----B----.TGCCHTEEEC.SSHHHHHHHHHHCSTTT.EEEEE--GGGC.HHSS--BESSSSBBE-TTSBCSSTT CS
                  x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9  90 v.......vqeagavkadekgkgrdikydklviAtGarprtl.gipgvevailargvedsdeilellekpk.kvvvvGtklla.ekagveldprggivVdeylrtsvpg 188
                  v       vq+   + ++ +++    ++d+l+iAtG  p+ + +++ + +a    +v++ + i+  ++ +  k+v v   l + +++g e +p g++v++ +  + ++ 
  MMETSP0890-20130614|26186_1 122 VdllkidvVQD---TLDQVTSTMSGKNFDALIIATGFVPSSPfKMKEAAHAV--DNVGTIKLIDAAVAAKIpKIVMVSSILTNgRNWGQENSP-GFVVTNAFGGVLDEK 224
                  13344332333...3344566667789*********8888884555433444..579999999988888668888888555556889999854.888888887666555 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3   0.00087       1.1       2     209 ..      65     257 ..      64     273 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00087
    PF07993.7   2 TGaTGfLGkvllekllrtqpevkiyllvRaksgesaleRleeelekkelfsallkelaerikvvegDlseprlgLseedlqelaeevdviihsAAtvnfee.pyke.llrtNvlGtrevlelakklkklvllhvSTavvageregeveekvyeeeederaklkglpn...tYtqsKalaEklvreasrrsglpvviiRpsiivgesetGwieg 209
                   GaTG  G++++e+l +    + ++  vR+ ++++     ++ + +  + +++     + +  ++ D+ ++   L++ +     ++ d+ i   + v     ++ke + ++   Gt ++++ a + k   ++ vS+  ++g + g+           e++ ++ ++n   +    K +aE+ +r++     +  +i+Rp+ + ++++ G+++ 
  MMETSP0890-20130614|26186_1  65 AGATGQTGRRIVERLSKIDG-IAVVGGVRNIEKATKSLSEDSIVVRGAMVQNV--GSVAPVDLLKIDVVQDT--LDQVTSTMSGKNFDALIIATGFVPSSPfKMKEaAHAVDNVGTIKLIDAAVAAKIPKIVMVSSILTNGRNWGQ-----------ENSPGFVVTNafgGVLDEKIVAENYLRNTN----IDYTIVRPGGLKAKPPVGALQV 257
                  68888888888888887764.57777788765544333333334444444333..24555555556666555..455555555556665555555554333233332566666788888888887777788888887777777653...........222222222200133456888888887776....7889999999888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1069.92
//
Query:       MMETSP0890-20130614|26191_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-11   42.3   0.0    9.4e-11   41.5   0.0    1.4  1  PF00899.16 ThiF family
  ------ inclusion threshold ------
      0.071   11.7   0.0        0.1   11.2   0.0    1.2  1  PF14336.1  Domain of unknown function (DUF4392)


Domain annotation for each model (and alignments):
>> PF00899.16  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.4e-14   9.4e-11       4     120 ..      22     136 ..      19     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.4e-14
   PF00899.16   4 kvlvvGaGglGseaaeaLaraGvgkltlvDkDtvelsNlnRqllfreedvgkpKaevakerlreinpeveveaveeriteenleellkdvDlvvdalDn..iearlllndacvkkgkpl 120
                   v++ G Gg+  e++++L+ aG+ +++++D   v+ls+l   ++ re+dvgk+K  +  er++e+np  ++++++e     +   l+ +v  + + +D   +++ + +++ c++kg+ +
  MMETSP0890-20130614|26191_1  22 WVMIWGFGGVNVELCKNLILAGI-SVSVCDSSIVKLSDLGHNFFLREDDVGKKKSVACIERIQELNPFAQANVIDEPR--VDGYTLI-SVERIGKKSDGeyYTKVMNIAKDCREKGISF 136
                  699********************.69********************************************99999866..4555555.5666666666554444444555566666555 PP

>> PF14336.1  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.5e-05       0.1     134     151 ..     103     120 ..      54     130 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
    PF14336.1 134 lliaiErpGraadgnyyn 151
                  +li++Er+G+++dg+yy+
  MMETSP0890-20130614|26191_1 103 TLISVERIGKKSDGEYYT 120
                  89***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 1017.71
//
Query:       MMETSP0890-20130614|26225_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   12.7   0.0        5.6    6.0   0.0    2.9  3  PF12915.2 Protein of unknown function (DUF3833)


Domain annotation for each model (and alignments):
>> PF12915.2  Protein of unknown function (DUF3833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.013   1.8e+02      78     106 ..      49      77 ..      45      86 .. 0.77
   2 ?    1.6   0.0    0.0094   1.3e+02      21      49 ..     101     129 ..      90     134 .. 0.82
   3 ?    6.0   0.0   0.00041       5.6      44      81 ..     183     220 ..     180     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.013
    PF12915.2  78 qtRvWtltktgdgtyegtaddvvgeatge 106
                  +++vWt+ k+++ +++ + ++++  ++++
  MMETSP0890-20130614|26225_1  49 DKKVWTIAKKQESSIRIRPETMLSATEIS 77 
                  789*********99987777776666655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.0094
    PF12915.2  21 epkldleeffdGklkaeGvvqdrsgkvtr 49 
                  e+++dl++ff+ +++ae +   r  +++r
  MMETSP0890-20130614|26225_1 101 EEQIDLSRFFSSRTEAERLTAARIAEIYR 129
                  6799************9888777776665 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.00041
    PF12915.2  44 sgkvtrrFtvdiegswdgntltLdEdFvyddgekqtRv 81 
                   g+  ++ t+ ++ s + +  tL+E+ + d+ge ++R 
  MMETSP0890-20130614|26225_1 183 LGRSSKAVTAVLTVSLQSQARTLEEQRRMDNGEMEQRY 220
                  578889999***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.95
# Mc/sec: 668.46
//
Query:       MMETSP0890-20130614|26230_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 941.67
//
Query:       MMETSP0890-20130614|26245_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-14   53.3   0.0    4.9e-14   52.7   0.0    1.4  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   3.6e-18   4.9e-14       1     251 []       5     318 ..       5     318 .. 0.57

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 3.6e-18
                  EEEEECE........................CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHC.HHCTTT-EEEE--------SEEEECTEEEEEEESC...GCCEEEEEECTTS....S-ECGGCEECCTCEEEEEEEEEE......CTEEEEEEECH...HHCTSSTTSHHHHHHHHHH.HHHHCCHHHH.SEEEE---S--BSSGH....................................................TTTBHHHHHSHHCBHBCCHHHHCBTT-C...........--SB--TC-TTTCCCHHB--S--EE................BHHHCCCCEEEEECTHHCHS.................SSS CS
   PF03372.18   1 ltwNvlg.....wnarsdr............akkldqladllqsedpDvllLQEvdedplsella.tglasglglagdgkvggggggdalgggglallsky...pldksirrtfqld....gkagiavprlssknkgdvpvrfr......ggktlalvntH...ltpgnrlrqrderallaei.dkladdsrgs.pvilaGDfNsrpdspd....................................................kgfrenaadflpgdgfddglrallphll...........lptspgttdtyekageparlDyilv................ssgwpalvvsgalllpdrgg.................SDH 251
                  +++Nvl+     +     +            +k+ +++ ++++++ p +++LQEv+ d ++ ++   +l+ + + a +g+++++        +g+ +l+     +l +s++ +++ d    +               + ++ +        ++ + l +tH   ++ +++ r  +   l+  +   l ++++   +++l+GDfNs+p s +                                                    +                      l+++l            + + ++++ty ++g+ a++Dy ++                                                     SDH
  MMETSP0890-20130614|26245_1   5 ASYNVLSpklkaK-----QpklylkdsgydeRKRMQEVCKEIREYEPQLVALQEVEKDFVDRFASeIKLNVAAY-AQSGGKERT--------DGCLVLYDStrfSLLHSEIGILDADqgkvN---------------AFAIAVFndnyktTNRKIILATTHllfNPKRGDIRFLQTKDLAINLaIVLERFGG-DaSLVLCGDFNSTPGSAVysylstgivnasyasqrtvpptwtgeyphyksghngngtammvhhpqqkqedQ---------------------ILNSPLpnlasayavesHDRGEPAFTTYLPHGTKACVDYLFYdqqslfpinrlelpplY------------------LlrqakglpantarlqapSDH 318
                  69*****665441.....1445666777777889999*******************887777777544444443.566666665........479999986222233333333333322211...............1112222234445588888*****8743334444433333222222122223333.248******************************99999999888888886666666555555544322221.....................12222222222222222222233445555666667*******66555555543333331..................233333444444555555888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.71
# Mc/sec: 1107.05
//
Query:       MMETSP0890-20130614|26252_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-35  121.2   0.4    4.5e-35  120.9   0.3    1.0  1  PF01026.16 TatD related DNase


Domain annotation for each model (and alignments):
>> PF01026.16  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.3   3.3e-39   4.5e-35      32     253 ..      10     247 ..       5     249 .. 0.89

  Alignments for each domain:
  == domain 1    score: 120.9 bits;  conditional E-value: 3.3e-39
                  EEE--SGGGHHHHHHHHHH-TT.EEEE-------GGG-.-HHHHHHHHHHHHH--SSEEEE-EE-EE-.......------HHHHHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHH--TT...........---B------HHHHHHHHH-......---B-----TT-TTT-S...HHHHHHHS-GGGB-----TTSS-----------GGGHHHHHHHHHHH-SS-HHHHHHHHHHHHHHH CS
   PF01026.16  32 vvvgtsskdskavlelakkypikvyavvGiHPnevdea.neelleeleelanvkhskvvaiGEiGLDy......ysreestkeaqeevFeeqlelAkelklplviHtreaeedlleilkeaaeaka..........kvvlHcfsgseeeakelldl......gyyislsglltfknakk...lrelvkavpldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkgltleevaaitaeNakrl 253
                  vv++ ++kd+++++e  ++ p +  a++GiHP++++e  +++l  +l+ +  ++  + +a+GEiGL +       + +es    q +++++ql++A+ + + ++iH+++a++ ll++l+e +++++          ++ lH+fsgs++ +k +l+       ++y+++s +++ + ++k   l +++ avp++ lL+E+D    ++      +  p+++++ + ++a++kg++le++a+ ta+Na++ 
  MMETSP0890-20130614|26252_1  10 VVQSIEEKDWQKAVEFCEQNPRQFRAAFGIHPWYAHEIiSDQLEIKLRTI--LEAHPLAAVGEIGLCKcaknvrGPMRESGFTTQLNLMKNQLRIAATFSRSVSIHCVKAHASLLQALEEIKAEQIdekganqkipAIALHSFSGSAHHVKLFLNHfensltRIYFGFSHTINVQLNSKpqiLEATILAVPDNLLLVESDL---DD-----IALAPNATKKAIAHIARIKGWSLEHTAQLTANNARAW 247
                  67888999*****************************8677777888888..999***********9977766658888999************************************77776666666778888*******************8789**************998877777799999*************5...44.....667999****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.45s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 1086.35
//
Query:       MMETSP0890-20130614|26251_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-06   26.4   0.0      8e-06   25.2   0.0    1.5  1  PF00534.15 Glycosyl transferases group 1
     0.0026   17.7   0.1     0.0061   16.5   0.1    1.6  1  PF13579.1  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.2e-09     8e-06      13     158 ..     106     249 ..     103     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.2e-09
                  X--EEEEE---BSTTT-HHHHHHHHHCSTT....GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH- CS
   PF00534.15  13 ekkkiilsvgrlekeKgvdllikafallkeq..enpnlklvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvggpaeivkdgvtGllvkpkdaealaeaiekllkd 158
                  +++ ++ +vg ++k+Kg+d +++++ +  +    n  ++ v  G ++ +   +++   + +s  ++  + ++     ++++   +f+++sr+E  ++ llE   +  p i+ ++gg++ i+ + +  ++v ++ ++++ ++   ++++
  MMETSP0890-20130614|26251_1 106 QNDFFLYFVGLVSKRKGFDIFLDVVCHCVKYapTNIRIRAVAFGVVSKRWAQRNRKPSCMISVDIRGAWDSE-LMWQHMITTRGLFLMTSRHENEPMELLESAIYSYPAISLATGGARQIISNSD--VIVVDY-VDTMKQKAIHAINN 249
                  5789999*****************9999888899**********7777777788888888877777777776.334566677****************************************999..777776.66666666666666 PP

>> PF13579.1  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   8.9e-07    0.0061      96     157 ..       4      75 ..       1      77 [. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.9e-07
    PF13579.1  96 gvP.lvvtlh......glllreg..sglvrrlyrrlerrllrradavlavseaeaeelra.lgvpadrvvvv 157
                  ++P +++ +h      g ++++g  s+ + rl+ + er  ++ +dav+ +s ++++++ a +g +a++  v+
  MMETSP0890-20130614|26251_1   4 DAPiFLIVVHggslwsGYWFHQGkiSRGADRLLNAEERQQWKAVDAVVYPSLYMRRTMHAlWGTTAAKSIVL 75 
                  555234556755555568899999************************************999998887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.44s 00:00:01.31 Elapsed: 00:00:00.93
# Mc/sec: 1530.58
//
Query:       MMETSP0890-20130614|26265_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-31  109.2   0.4    2.8e-31  108.5   0.3    1.3  1  PF00106.20 short chain dehydrogenase
    4.6e-14   52.7   0.1    6.3e-14   52.2   0.1    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    2.5e-11   43.4   0.1    3.9e-11   42.8   0.1    1.2  1  PF08659.5  KR domain
    7.4e-05   21.6   0.1    0.00011   21.1   0.1    1.2  1  PF02719.10 Polysaccharide biosynthesis protein
    0.00042   19.9   0.0      0.001   18.6   0.0    1.6  1  PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.3     1e-34   2.8e-31       2     166 ..      19     187 ..      18     188 .. 0.93

  Alignments for each domain:
  == domain 1    score: 108.5 bits;  conditional E-value: 1e-34
                  EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH--..-EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
   PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealg..aevtvvacDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltld....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                  +vliTG+++g+G+a A +++e  + +l+l++rr  +++++el+ae+ ++   ++++   +D+ d d+++al ++++++++++d++v+nag+++ +   +e t  ++e+v++++vt+ ++ + ++ +    ++ g ++++ S+ag   ++g ++Y+a+k+a+ a++++ r+++
  MMETSP0890-20130614|26265_1  19 IVLITGASSGFGAAAAWRFAEI-GCKLILIARR--EERLKELAAEICTKYprVKIHCEPLDMCDLDKVEALPSTLPEEFAQVDILVNNAGIARgKHAAQENTRIDIEAVMKTNVTSLIVATSVFSKgmlqRGRGHIINIGSIAGHEAYAGGSVYCATKHAVTAFTTAARHDL 187
                  79*******************9.6699999999..999999999999666236666666**********************************88889999*************************999777************************************9985 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   2.3e-17   6.3e-14       5     221 ..      26     238 ..      24     245 .. 0.91

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 2.3e-17
                  ------HHHHHHHH---EEEE---HH---------------.---..----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB-----EEEEEE-------------------THHHHHHHHHH----S---EEEEEE--------------------------------CCC---HHH CS
    PF13561.1   5 dnsigwaiakalaeaGaevilttwvpaklkkkvqelakelp.adv..vplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneggSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggiekmieyseenapLgkelsaeevaeaaa 221
                  ++++g+a a  +ae G+++il  + +++lk+  +e+ +++p  ++   plD+ + ++v+ l  ++ e++  ++Dilv+ ++++     +    e +r +++a ++++++sl+  ++++ + +l    g i+ +  +a ++++ g + + + K a+   t    ++l     iRv +is G  + ++++ + +++++ + ++  a L   l+a+++a+ ++
  MMETSP0890-20130614|26265_1  26 SSGFGAAAAWRFAEIGCKLILIARREERLKELAAEICTKYPrVKIhcEPLDMCDLDKVEALPSTLPEEF-AQVDILVNNAGIARG---KHAAQENTRIDIEAVMKTNVTSLIVATSVFSKGMLQRGRGHIINIGSIAGHEAYAGGSVYCATKHAVTAFTTAARHDLVG-TPIRVTCISPGFAE-TEFSIVRFNNDLQKAASVYANLVP-LNANDIADQII 238
                  489*************************999999******96667546********************9.************997...6677899***********************9866666669***************************9999999888887.8**********988.789999999999999999999988.99999998876 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   1.4e-14   3.9e-11       3     165 ..      20     185 ..      19     198 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.4e-14
                  EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH-..---EEEEE--TTSHHHHHHHH----TTS.---EEEE------.---TTT--HHHHHHHHHHHHHHHHHHHHHHCC....----EEEEEEEGGGT-------------HHHHHH------ CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaeleal..gaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlr.dallaemtaedlaavlapKvtGawnLhellad....epldffvlfSSiagvlgsagqanyaaanaflDalaehrra 165
                  +L+tG+  g+G+++a + ae g + ++++ r+++ +e      ae+  +   +++++ ++D+ d d+veal +++ +e+ +++  v+ Ag+ r + + +e t+ d++av+++ vt   +   ++++    +   +++ + Siag    ag + y+a+++ + a+  + r 
  MMETSP0890-20130614|26265_1  20 VLITGASSGFGAAAAWRFAEIGCKLILIARREERLKEL----AAEICTKypRVKIHCEPLDMCDLDKVEALPSTLPEEFAQVDILVNNAGIARgKHAAQENTRIDIEAVMKTNVTSLIVATSVFSKgmlqRGRGHIINIGSIAGHEAYAGGSVYCATKHAVTAFTTAARH 185
                  8***********99999988777655555555333333....33443332369***************************************956699999**************99999999999666666779***************************99887665 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   3.8e-08   0.00011       1     178 [.      20     221 ..      20     243 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.8e-08
   PF02719.10   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleealee..lkvdvvfhaAAl...KhVPlvee..npleavktNvlg....tenvieaaieagvekvvli...StDKAvnPtnvmGatKrlaekllqalaeeseekk............tkfvvvRfGNVlgSrGSv 178
                  vl+tGa+  +G +   ++++  +k +il+ r E +l+e++ e  +++ + k+++e    ++d+ + e l ++l e   +vd++++ A +   Kh    ++   +  ++ktNv++    t+   +   + g  +++ i       A    +v+ atK +   +++a++++   +             t+f++vRf N l    Sv
  MMETSP0890-20130614|26265_1  20 VLITGASSGFGAAAAWRFAEIGCK-LILIARREERLKELAAEICTKYPRVKIHCE-PLDMCDLDKVEALPSTLPEefAQVDILVNNAGIargKHAAQENTriDIEAVMKTNVTSlivaTSVFSKGMLQRGRGHIINIgsiAGHEAYAGGSVYCATKHAVTAFTTAARHDLVGTPirvtcispgfaeTEFSIVRFNNDLQKAASV 221
                  89******************9986.6667788899*******9889998888777.44589999999998887542359999999876533377655433213455678998642221666666677777777886521167899**************9999999998866558899******************99999998 PP

>> PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.8e-07     0.001      42      66 ..      20      43 ..       3      53 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.8e-07
    PF12242.3 42 vLviGaSsGyGlAsrialafgagad 66
                 vL++GaSsG+G+A++   a + g +
  MMETSP0890-20130614|26265_1 20 VLITGASSGFGAAAAWRFA-EIGCK 43
                 9************987666.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.87
# Mc/sec: 774.00
//
Query:       MMETSP0890-20130614|26266_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.17   11.1   6.0       0.24   10.6   4.2    1.4  1  PF06553.7  BNIP3


Domain annotation for each model (and alignments):
>> PF06553.7  BNIP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.2   1.8e-05      0.24      59     108 ..     102     152 ..      43     163 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.8e-05
    PF06553.7  59 reesressrsssscdsPrrsrkppqeegqieldveeeee.rdvsieseeea 108
                  r +sr+ss+ s   +sP+  ++  ++++q    vee+++ r  s++ +e++
  MMETSP0890-20130614|26266_1 102 RTSSRTSSPRSNINNSPPPQNTITPNSQQLRSTVEEQKShRPLSSQADEDN 152
                  222333333444455555555555555555554443333022233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 911.47
//
Query:       MMETSP0890-20130614|26281_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       411  (0.0300614); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.92
# Mc/sec: 698.07
//
Query:       MMETSP0890-20130614|26279_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-41  139.8  16.4    5.7e-15   55.0   3.1    3.2  3  PF03457.9 Helicase associated domain


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   2.1e-14   2.8e-10       8      66 ..      30      83 ..      24      85 .. 0.92
   2 !   52.2   0.8   3.3e-18   4.4e-14       2      66 ..      87     150 ..      86     152 .. 0.91
   3 !   55.0   3.1   4.2e-19   5.7e-15       8      67 ..     164     229 ..     158     230 .. 0.95

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 2.1e-14
    PF03457.9  8 WeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgtLsperieqLealg 66
                 + e+la+L+ f +++Gh  vPr+       LG Wl+  R+aar g+L+++r eqL+ +g
  MMETSP0890-20130614|26279_1 30 FTEKLAELETFINTNGHSDVPRTN-----ELGMWLAVVRRAARDGKLPKQRLEQLRLVG 83
                 789*************999***96.....9*************************8665 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 3.3e-18
    PF03457.9   2 spaddaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgtLsperieqLealg 66 
                  +p + +Weeg++ + +f+++ G  ++P ++ eeg +L +Wl++qR+aa++g Ls+e++++L++lg
  MMETSP0890-20130614|26279_1  87 KPLENRWEEGFRLATQFVKRQG-SLIPPKHLEEGQPLRAWLNEQRKAAHNGILSAEHQARLADLG 150
                  57899*****************.6655555699******************************98 PP

  == domain 3    score: 55.0 bits;  conditional E-value: 4.2e-19
    PF03457.9   8 WeeglaaLrafaaehGhlnvPrdatee......gfkLGqWlknqRaaarkgtLsperieqLealgf 67 
                  W ++l+ L+++++++Gh+ vPr+++ee        kLGqWl++q+a+a++g+Ls+e+++qL +lg+
  MMETSP0890-20130614|26279_1 164 WLRHLETLKKYRKREGHAAVPRSHVEEdsergrALKLGQWLSKQKARAQQGKLSDEQRKQLLDLGV 229
                  ****************999******************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:01.01
# Mc/sec: 638.24
//
Query:       MMETSP0890-20130614|26291_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-19   68.2   0.0    8.3e-19   67.7   0.0    1.1  1  PF04106.7 Autophagy protein Apg5


Domain annotation for each model (and alignments):
>> PF04106.7  Autophagy protein Apg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   6.1e-23   8.3e-19       3     196 ..      75     271 ..      74     273 .] 0.87

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 6.1e-23
    PF04106.7   3 lPvGvLyDllageeeltkseqlpwnltvhfsdyPeeelirleseesvkeafinslKeAdfvkngtskkimnLskedskqlwksvknhnldefkrinkkll..pssskkfrniPvriylpsklkviqelieplkeegqeltledalsellpelf................eskeeeelakvviqGievpleapleelvenlkypdnflhivvl 196
                  lP+GvL+D  ++       +qlpw+ + hf  +P+e    l+++   ++af++ lK+A+ +  gt+     L + d+ q+w++  n+n + fk+   k     + + +++ +Pvri++++  +++q + +  + +g +  l d ls++  +++                  ++++   +++++G  ++ + pl   ++ l+++dnfl++v++
  MMETSP0890-20130614|26291_1  75 LPLGVLFDARNQ-------SQLPWRWIAHFAAVPKE----LPGD---EKAFFHALKQATHLEVGTARSALLLPRVDQIQIWQATLNGNRTLFKTHRIKPRdsGPLEPPIKLVPVRIICKKL-RILQLAHPANSPDGDRRLLSDTLSSMFASSTfrsffsetaadkdellFLEKNQATLRFKVHGLLLDPDLPLIFAWKALRHADNFLYLVLV 271
                  7*******6433.......2469************7....6666...67*****************************************9986443333336667889**********99.*************************99988889999998887777774456889999*****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.84
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|26317_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-66  223.9   0.1      2e-66  223.6   0.1    1.1  1  PF00120.19 Glutamine synthetase, catalytic domain
  ------ inclusion threshold ------
      0.083   12.3   0.0       0.26   10.7   0.0    1.8  2  PF03951.14 Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> PF00120.19  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.1     3e-70     2e-66       2     259 .]      57     311 ..      56     311 .. 0.94

  Alignments for each domain:
  == domain 1    score: 223.6 bits;  conditional E-value: 3e-70
                  T-HHHHHHHHHHHHHH.----EEE--B-EEEEESEEEEE------EEEEE---------B-TTTS--HHHHHHHHHHHHH----EEE-EEEE----EEEEE--EEHHHHHHHHHHHHHHHHHHHHH---EEE--S-S---------BEEEEEE..----BSS-----.----HHHHHH----TTTHHHHHHHHS-STGGGGTS-----SSSEEEEESS-TTEEEEE-----GGG--EEE-S------HHHHHHHHHH-- CS
   PF00120.19   2 rdpRsilkralerlae.eglepvfgpElEFflfdkerpegspektglpsdkgqvkggyfsvapldeaedirreivkalealgievetihhEvapgQfEidlkfadaleaaDnlvlfkyvvkevAekhGltatfmpKPlfgdnGsGmHvhlSlwdakdgknlfadedgeadlsetarqflgGllkhakaitaltaptvnsykRlvpgteapvavawgarnRsalvRipaggkpkakrvEvRlpdpsanPYlalaallaag 259
                  + pR++lk++++ l++  g+e+ +++ElEFflf++  +  ++ ++  +++ +  +++ +s+  + + e+i+r i +al + gi++e+++ E   gQ+E+++k+++a  a+ +++++k++vk +A  +++ a+fm+K+ ++  Gs++H+hlSlw+  +++ +f+d+++  ++s+ +++fl+Gll+ a++ t + ap++nsykR+++++ ap+++ w+++nR+a++R++a  +++a r+E+R+p+++anPYl laa++a+g
  MMETSP0890-20130614|26317_1  57 HAPRAMLKKQMKILKDeYGYELKAATELEFFLFNQSLDVLKK-NQYTKIEPIGWYNEDYSIFGTVKEENIMRPIRNALFQSGIPIEGSKGEAEAGQQELNIKYSSAELACEHHIIAKHAVKDIAFLNNYSASFMAKYRADRVGSAAHIHLSLWQ--NNNSVFYDPNQNFGMSNIMQHFLAGLLALAPESTLFHAPSINSYKRFTAESFAPTKILWSVDNRTAAFRLVAP-NTSAVRIECRIPGADANPYLSLAAIIASG 311
                  579***********9846999*************96554444.5666677799999**********************************************99*********************************99999***********6..6789*********************************************************************.889***********************986 PP

>> PF03951.14  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.8e-05      0.26      51      83 ..      19      48 ..       7      49 .. 0.84
   2 ?   -3.3   0.0      0.93   6.3e+03      15      41 ..     119     144 ..     115     151 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.8e-05
   PF03951.14 51 SDmiLkPdlstavidPfreeegktalvlcdvyd 83
                  D+ ++Pdl t+   P+    + ta+vlcdv+d
  MMETSP0890-20130614|26317_1 19 GDFSVVPDLLTLRRVPWL---SGTAMVLCDVID 48
                 48899*************...578*******97 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.93
   PF03951.14  15 klknvrikatelkedaleegvnfDGSs 41 
                  ++k+ +i  + +++ +++ g+ + GS+
  MMETSP0890-20130614|26317_1 119 TVKEENIM-RPIRNALFQSGIPIEGSK 144
                  55555554.444566788899888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.13
# Mc/sec: 840.83
//
Query:       MMETSP0890-20130614|26329_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-25   90.1   0.0    1.5e-25   89.6   0.0    1.1  1  PF00009.22 Elongation factor Tu GTP binding domain
    1.5e-13   50.6   0.1    3.5e-13   49.5   0.0    1.6  1  PF03143.12 Elongation factor Tu C-terminal domain
      5e-06   26.4   0.5    2.2e-05   24.3   0.0    2.4  3  PF03144.20 Elongation factor Tu domain 2
    0.00029   20.2   0.0         10    5.4   0.0    3.3  3  PF10662.4  Ethanolamine utilisation - propanediol utilisation
     0.0029   17.4   0.0     0.0052   16.6   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
      0.008   15.3   0.2      0.024   13.8   0.2    1.7  1  PF08693.5  Transmembrane alpha-helix domain
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.037   13.6   0.0    1.7  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.046   14.0   0.2        0.2   12.0   0.1    2.0  1  PF08477.8  Miro-like protein
      0.085   11.9   0.1         10    5.1   0.0    2.2  2  PF09439.5  Signal recognition particle receptor beta subunit


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0     1e-28   1.5e-25       4     180 ..      90     303 ..      87     312 .. 0.80

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 1e-28
                  EEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE...................T...ESCEEEEEEE----GGGHHHHHHHHHT-..SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHH..................HHHCTTGCTCGEEEEEE-STCCHHHHHHHH CS
   PF00009.22   4 rnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle...................k..etkkrlinliDtPGHvdFskevirglrvl..DgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkekl..................lekylekgeeevpvvpgSalkgegidaLle 180
                  + +++ig+vD+GK++l++ l+  + +  + g    ++ l+ k+k+e+ +g T  +++  +                    +   ++++ ++liD  GH+ + k++  gl ++  D+a+lvv a+ Gv+  T+e++ +a +l ++i vvi+KiD++ +  l+++ + l + l                    +  ++g + +pv+ +S ++g g+  L +
  MMETSP0890-20130614|26329_1  90 IRVAMIGNVDSGKSSLIGVLTNGSLDDGR-GL---ARSLVLKHKHEQSNGRTSAVTVELMGfkeehqivptarhhsqrwaEvvAGSDKSVTLIDLCGHERYLKTTVFGLTAMypDYALLVVGANMGVQRMTKEHVAIACALSIPIAVVITKIDMCpQPVLKQTRQTLARCLrqhqrmplpvkddaqvivAAESIQNG-RIAPVFSVSNVSGLGVPLLRN 303
                  6799*****************77755444.22...2456999********998877665557799*99999998877665277*************************666555*****************************************877777777777766677777778877777776433334444.79***********99984443 PP

>> PF03143.12  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.3e-16   3.5e-13       2      96 ..     461     550 ..     460     551 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 2.3e-16
   PF03143.12   2 ikahtkfkAqvyvlnkptpikagYrpvlyvrTadvtgkivellkkldsekkefvkpGdnvkvevelik.piavekgkrFaiReggrTvavGvvtev 96 
                  +ka++ f+A+v +l++ t++++gY+pv++ +T+++t+   ++     +++ +++++G ++ v ++++    ++  g+ F +Reg+   ++G+v ++
  MMETSP0890-20130614|26329_1 461 PKATRAFEASVCILHHSTTVAEGYEPVVHAQTVRQTCALLSI-----HSGDHVLRTGAKALVVFRFKYhFEYLLPGTTFLFREGR-AKGIGKVIKI 550
                  7899*********************************99999.....77999**************9956799**********99.9******997 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.8     1e+04       9      18 ..      49      58 ..      49      58 .. 0.87
   2 ?   -2.0   0.0       2.4   3.6e+03      55      55 ..     170     170 ..     141     212 .. 0.50
   3 !   24.3   0.0   1.4e-08   2.2e-05       1      68 [.     378     444 ..     378     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 6.8
                 EE--EETTEE CS
   PF03144.20  9 ysGtlkkGdt 18
                 + G+lk++dt
  MMETSP0890-20130614|26329_1 49 EKGELKENDT 58
                 579*****97 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.4
                  E CS
   PF03144.20  55 G 55 
                  G
  MMETSP0890-20130614|26329_1 170 G 170
                  2 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 1.4e-08
                  EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdldeavaganaGvivaikgledaii 68 
                  G +++g+v +G + ++dt+ +++n++ ++ i + vrs+e  +++ +ea++g +a + ++  +  + ++
  MMETSP0890-20130614|26329_1 378 GLIVGGTVTRGCISVNDTILLGPNRV-GEFIPVLVRSIECKRQPIKEARPGMAATLAIRSLNRRNPLR 444
                  5689*****************99987.555************************99998776666445 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0068        10       3      26 ..      91     114 ..      89     118 .. 0.87
   2 !    5.3   0.0    0.0073        11      82     116 ..     220     253 ..     175     257 .. 0.71
   3 !    5.3   0.0    0.0073        11     103     142 ..     267     306 ..     264     307 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0068
    PF10662.4   3 killiGkvgaGKTtLtqalkgeel 26 
                  ++ +iG+v++GK +L   l++ +l
  MMETSP0890-20130614|26329_1  91 RVAMIGNVDSGKSSLIGVLTNGSL 114
                  789************999988665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0073
    PF10662.4  82 pgfaslfnkpviGiiTkidlaedeenielveelLk 116
                   ++a+ ++ p+  +iTkid++  +  +++++++L 
  MMETSP0890-20130614|26329_1 220 VAIACALSIPIAVVITKIDMC-PQPVLKQTRQTLA 253
                  356788999999*********.7777888888775 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0073
    PF10662.4 103 edeenielveelLkaaGaekifevsavekegieellkyle 142
                  +d++++ ++ e +++  ++ +f+vs+v+  g+  l+++l+
  MMETSP0890-20130614|26329_1 267 KDDAQVIVAAESIQNGRIAPVFSVSNVSGLGVPLLRNFLS 306
                  58899999*************************9999886 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.4e-06    0.0052       1      88 [.      91     209 ..      91     263 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.4e-06
                  EEEEE--TT---HHHHHHHHC.........ST....CTEETS-TT-SSSESEEEE........................ETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETT CS
   PF01926.18   1 evaivGrpNvGKStLinaLtg.........ek....aakvsdypgtTrditenev........................kkek...iilvDtPGiiegasedkeiegikkylekveradvlllvvdas 88 
                  +va++G+  +GKS+Li  Lt+         ++    + k ++  g T  +t + +                               ++l+D+ G  +        + ++ +   + + d++llvv a+
  MMETSP0890-20130614|26329_1  91 RVAMIGNVDSGKSSLIGVLTNgslddgrglARslvlKHKHEQSNGRTSAVTVELMgfkeehqivptarhhsqrwaevvaG--SdksVTLIDLCGHERY-------LKTTVFGLTAMYPDYALLVVGAN 209
                  699*****************733333322211343333444445555555332213333344455555443333333331..0445689999993211.......11222222223334555555443 PP

>> PF08693.5  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.6e-05     0.024       8      25 ..     217     234 ..     213     235 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.6e-05
    PF08693.5   8 kttVaIAvgVviPVgvIa 25 
                  k+ VaIA++  iP++v++
  MMETSP0890-20130614|26329_1 217 KEHVAIACALSIPIAVVI 234
                  667*************97 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.037       2      39 ..      91     131 ..      90     139 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
                  EEEEE-------HHHHHHHHHHHHH------...-EEE-SS CS
    PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyrva...vvkhldh 39 
                  +va++G+ dsGK++li  l n  +++g+  a   v+kh + 
  MMETSP0890-20130614|26329_1  91 RVAMIGNVDSGKSSLIGVLTNGSLDDGRGLArslVLKHKHE 131
                  799*********************99986552226666665 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013       0.2       1      26 [.      91     149 ..      91     238 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00013
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp.................................k 26 
                  +v+ +G+ ++GKssl+  l+ ++ +                                 +
  MMETSP0890-20130614|26329_1  91 RVAMIGNVDSGKSSLIGVLTNGSLDdgrglarslvlkhkheqsngrtsavtvelmgfkE 149
                  7999****************999998888888887444433333333333333333321 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0082        13       5      30 ..      91     116 ..      87     162 .. 0.85
   2 ?    5.1   0.0    0.0069        10      40      62 ..     165     186 ..     131     196 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0082
                  EEEEE--TT---HHHHHHHHHSS--- CS
    PF09439.5   5 avllvGlsdsGKTslftrLttdsvkk 30 
                  +v ++G  dsGK sl+  Lt++s  +
  MMETSP0890-20130614|26329_1  91 RVAMIGNVDSGKSSLIGVLTNGSLDD 116
                  6789****************997654 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0069
                  ETT-...-----EEEE----GGG CS
    PF09439.5  40 alkvksekgkkltliDfPGhekl 62 
                  a+ v +  +k++tliD+ Ghe+ 
  MMETSP0890-20130614|26329_1 165 AEVV-AGSDKSVTLIDLCGHERY 186
                  3333.67899**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.73
# Mc/sec: 1821.89
//
Query:       MMETSP0890-20130614|26346_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 703.19
//
Query:       MMETSP0890-20130614|26353_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.66
# Mc/sec: 1031.16
//
Query:       MMETSP0890-20130614|26360_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1283  (0.0938414); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.85
# Mc/sec: 1412.44
//
Query:       MMETSP0890-20130614|26354_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.7   0.1       0.15   10.2   0.0    1.1  1  PF07462.6 Merozoite surface protein 1 (MSP1) C-terminus


Domain annotation for each model (and alignments):
>> PF07462.6  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.1e-05      0.15     213     305 ..     110     207 ..     101     221 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.1e-05
    PF07462.6 213 sylssGLhhvleelkellk..nknytGktnsenvkevkealeqykellPkgvtae...akvtavvtppsadaaaapdsvrpagasgaasgstsaptae 305
                  sy+s GL  v++   el      +y  + ++ +      +++q ++  P+   +e   a++t++  p +a +++ p++  p+g + +as+   ++ + 
  MMETSP0890-20130614|26354_1 110 SYISKGLQNVFQREEELTPtlAARYREDMPPRQRYGQDTSYQQQQQQQPQQRRSEalsAPSTTARRPKTASSSPLPERFAPKGNPKSASNLLAQAQTS 207
                  9**********988888652257899999**99999999**********87665511167888999999999****************9987666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.43s 00:00:01.27 Elapsed: 00:00:00.80
# Mc/sec: 976.52
//
Query:       MMETSP0890-20130614|26375_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-19   67.0   0.0    1.6e-18   66.3   0.0    1.4  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    1.4e-18   66.7   0.1    2.2e-18   66.1   0.0    1.3  1  PF00072.19 Response regulator receiver domain


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   2.3e-22   1.6e-18      38     110 ..      31     104 ..      11     105 .. 0.96

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 2.3e-22
                  EEEEEEE-----THHHHHHHCSTTTCCSC.SSGGGTT----THHHHHHCCEEEEEEEEECTCT-CEEEEEEEEC CS
   PF02518.21  38 lvieVeDnGiGipeedlervfepffqtdd.dsrkvggtGlGlsivkklvellggeieveskeggGttvtlrlpl 110
                  l+i+V+DnGiGi  e+++ +f++f q ++ ++++  g+GlGl+i+++++e++gg+i ++s+ g+G+t+ +r+pl
  MMETSP0890-20130614|26375_1  31 LMIQVKDNGIGIATEEQPLLFKAFSQIRPnENQRGRGSGLGLAISREIAERHGGSIGLKSSLGQGSTFFIRVPL 104
                  89***************************99999999**********************************997 PP

>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   3.3e-22   2.2e-18       2     111 ..     140     259 ..     139     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 3.3e-22
                  EEESSSHHHHHHHHHHHHHTTSEEEEEESSSHHHHHHH..HHHH..........ESEEEEESS-TT----HHHHHHHHHTTTSEEEEEES-TTHHHHHHHHHTT-SEEEESS--HHHHHHHH CS
   PF00072.19   2 livdDeplvrellrqalekegyeevaeaddgeealell..kekd..........pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvkav 111
                  l+vdD ++ r+ll   +++ g++++  a++g ea++ +  +  d          +D+i+lD  mp ++G e ++ +r+++ k  ii vt+++ eed+   ++aGa+ +l+Kp++++++++++
  MMETSP0890-20130614|26375_1 140 LVVDDCEVTRKLLSAQIQRIGFNIIVQAENGVEAIKACgyD--DnnnteetnypFDVIFLDYCMPICTGPECASILRANQCKSVIIGVTGNALEEDIALFISAGADSILTKPVSRRQIIDKL 259
                  89************************************661..44456788999*****************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.57
# Mc/sec: 1144.47
//
Query:       MMETSP0890-20130614|26381_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 251.23
//
Query:       MMETSP0890-20130614|26384_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   17.9   2.7     0.0013   17.9   1.9    1.9  2  PF04582.7 Reovirus sigma C capsid protein
  ------ inclusion threshold ------
      0.045   14.0   1.7      0.045   14.0   1.2    2.6  3  PF04102.7 SlyX
      0.046   13.1   2.7       0.14   11.5   0.0    2.6  3  PF08020.6 Protein of unknown function (DUF1706)
       0.15   12.1   2.1       0.23   11.5   0.5    2.1  2  PF04492.8 Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.9   3.7e-07    0.0013      34     132 ..      23     124 ..      13     158 .. 0.80
   2 ?   -1.9   1.4      0.39   1.3e+03      75      92 ..     226     243 ..     167     340 .. 0.51

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.7e-07
    PF04582.7  34 yerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqss....vdslsseladlselvsahdaalsslqtevdanstdisnlk 132
                   erlt+le     l++ ++++ s+  + ++++q+++  l+++  +  + + + ++ q+       ++ + ++ +++ + +++++ sslq++v an+ ++ nl+
  MMETSP0890-20130614|26384_1  23 SERLTNLEQGYTNLEQGIQQLNSQFQQRNSQFQQMILLLQNIANKTGNGNGTGQQAQTNhggqQTTSQTVISAVTQQSAQNTTSRSSLQNDVVANT-KVDNLD 124
                  69**********************************99999887776666666666554111134456678899999999*************997.456654 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.39
    PF04582.7  75 vkaelkelstevaalqss 92 
                     el +l   v++ qs 
  MMETSP0890-20130614|26384_1 226 EWHELASLADSVNNGQSD 243
                  333333333333333222 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.2   1.3e-05     0.045       3      54 ..      23      74 ..      21      83 .. 0.87
   2 ?   -2.9   0.1       2.4   8.1e+03      37      43 ..      96     102 ..      85     123 .. 0.53
   3 ?   -0.8   0.0      0.55   1.9e+03      22      43 ..     286     307 ..     284     317 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
    PF04102.7  3 eerieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkelees 54
                 +er+++LE  ++  e+ i++LN +  + + + +++   l+ +a++  + + +
  MMETSP0890-20130614|26384_1 23 SERLTNLEQGYTNLEQGIQQLNSQFQQRNSQFQQMILLLQNIANKTGNGNGT 74
                 68***************************************99998887633 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.4
    PF04102.7  37 lqrqlrl 43 
                  +++q ++
  MMETSP0890-20130614|26384_1  96 VTQQSAQ 102
                  3333222 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.55
    PF04102.7  22 eLNevvaeqqkeidrlqrqlrl 43 
                  eL++ + +  k+ ++l+r++++
  MMETSP0890-20130614|26384_1 286 ELSTKLLKTSKTKEQLKRHVDA 307
                  6777777777777777777665 PP

>> PF08020.6  Protein of unknown function (DUF1706)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.081   2.8e+02      23      40 ..      38      55 ..      17      93 .. 0.59
   2 ?   11.5   0.0   4.2e-05      0.14      74     119 ..     219     264 ..     209     272 .. 0.86
   3 ?   -2.5   0.0       0.8   2.7e+03     147     165 ..     278     296 ..     277     300 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.081
    PF08020.6 23 keiesipeelkdekfeeg 40
                 + i++++++ ++++ +++
  MMETSP0890-20130614|26384_1 38 QGIQQLNSQFQQRNSQFQ 55
                 444444444333333322 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4.2e-05
    PF08020.6  74 kfpaegykWnqlgelnqefykkyqelsleelkakLkesheevlali 119
                  ++ +  y+W +l  l+ ++++ +++ +le+l + ++e+h +  + i
  MMETSP0890-20130614|26384_1 219 DTASVSYEWHELASLADSVNNGQSDFELEKLADGYNENHITYEKSI 264
                  677789********************************98766666 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.8
    PF08020.6 147 sntsspyksarkkirkwkk 165
                  +nt  py+ +++k+ k  k
  MMETSP0890-20130614|26384_1 278 MNTFIPYTELSTKLLKTSK 296
                  6999999999999988776 PP

>> PF04492.8  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   6.9e-05      0.23       3      57 ..      22      80 ..      20     128 .. 0.68
   2 ?   -1.7   0.0       0.9   3.1e+03      14      35 ..     284     305 ..     280     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.9e-05
    PF04492.8  3 kenrvadledGYlrlaneileallaadlskrel....kvllavirktYgynkksdrvvn 57
                 k++r  +le+GY+ l + i++   + +  + ++     +l +++ kt   n  ++   +
  MMETSP0890-20130614|26384_1 22 KSERLTNLEQGYTNLEQGIQQLNSQFQQRNSQFqqmiLLLQNIANKTGNGNGTGQQAQT 80
                 7899***************9988776666666655567889999999887744444322 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.9
    PF04492.8  14 Ylrlaneileallaadlskrel 35 
                  Y+ l+ ++l+ + +++  kr++
  MMETSP0890-20130614|26384_1 284 YTELSTKLLKTSKTKEQLKRHV 305
                  8999999999999988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1209  (0.0884289); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.63
# Mc/sec: 1319.90
//
Query:       MMETSP0890-20130614|26434_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-07   30.1   0.0    3.6e-07   29.9   0.0    1.2  1  PF11712.3 Endoplasmic reticulum-based factor for assembly of V-ATPase


Domain annotation for each model (and alignments):
>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.6e-11   3.6e-07       2      52 ..      10      60 ..       9      80 .] 0.76

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.6e-11
    PF11712.3  2 sLLkgskvyippppkkpekspeflallerLraaqeedeYkrlirdvdksqk 52
                 + ++gs + +++p + +  ++e++++ + L++++ee+eY r+i++v++   
  MMETSP0890-20130614|26434_1 10 EFVRGSVLIFTKPGPSTPINSELEQRRAYLKRRAEEREYARMISSVKQRPH 60
                 5789999999999999999************************88866433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 342.34
//
Query:       MMETSP0890-20130614|26438_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.4   1.3        1.4    8.5   0.0    2.8  3  PF07332.6  Protein of unknown function (DUF1469)
      0.015   15.0   4.8      0.031   13.9   3.2    1.6  1  PF01284.18 Membrane-associating domain
      0.027   14.6   7.7       0.34   11.1   2.9    2.4  2  PF03229.8  Alphavirus glycoprotein J
      0.095   12.4   0.9        6.4    6.5   0.0    3.2  3  PF05915.7  Eukaryotic protein of unknown function (DUF872)
       0.15   11.7   1.5       0.94    9.1   0.0    2.5  2  PF12158.3  Protein of unknown function (DUF3592)
       0.65    9.9   7.3        2.9    7.9   1.2    2.4  3  PF09685.5  Tic20-like protein


Domain annotation for each model (and alignments):
>> PF07332.6  Protein of unknown function (DUF1469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.67   1.5e+03      39      58 ..      47      65 ..      37      74 .. 0.47
   2 ?    8.5   0.0    0.0006       1.4      21      90 ..     105     174 ..     101     186 .. 0.72
   3 ?    4.5   0.0     0.011        24      79     108 ..     208     235 ..     195     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.67
    PF07332.6 39 gllgaalvlalvallvllaa 58
                 + l++++v+++ a+++ +a+
  MMETSP0890-20130614|26438_1 47 LRLVMGGVCFI-AFIFSCAT 65
                 33344443333.33333443 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0006
    PF07332.6  21 eLakaElkekakragkglgllgaalvlalvallvllaalvaaLaealvlpaw.lAalivavvllllAgila 90 
                  +L k++l ek+++    + +   a+v+ ++  ++ ++   aa  + ++lp + ++++   +++++ A++ a
  MMETSP0890-20130614|26438_1 105 ALKKKDLDEKKTETWNTIEFNRTAVVMSFLLTFFSTVYYLAAT-WFIILPIAdISFGCAYLLMAVFAWAGA 174
                  6778888888888888888888888877777777776666666.344445446788888888888888776 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.011
    PF07332.6  79 avvllllAgilalvgkrrlkakslaperti 108
                  +v +l ++ +l++vg+  l++   ap++t+
  MMETSP0890-20130614|26438_1 208 GVTYLFIGCALIAVGVMSLQG--SAPDETT 235
                  7899**************974..6666665 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.2   1.4e-05     0.031      12     106 ..      50     179 ..      43     220 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
   PF01284.18  12 lqlvfaiiilglvaslia..........................................kldqllgspssalnfavfvavfsflyalallvlylfknkyftsilwplidlivdalaallwlvafialaaglrgvsc 106
                  +   ++ i+++++ ++i+                                           ld + +  + +++f  ++ v+sfl++++  v yl        + w +i+ i+d  + + +l  +++ +ag ++ s 
  MMETSP0890-20130614|26438_1  50 VMGGVCFIAFIFSCATIGvplwsygeytvfsrtveitiglwrvntvvedgkdddsalkkkDLDEKKTETWNTIEFNRTAVVMSFLLTFFSTVYYLA-------ATWFIILPIADISFGCAYLLMAVFAWAGAGSWST 179
                  333344444555545555566699999999999999999999999999999999999999778888999************************994.......7788888888888888888777777777666444 PP

>> PF03229.8  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.016        37      65      97 ..      25      58 ..       8      67 .. 0.58
   2 ?   11.1   2.9   0.00015      0.34       5      80 ..     212     282 ..     209     286 .] 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.016
    PF03229.8 65 pptdstvaaetPgp.flptdfalPlviGGlcalt 97
                   +d+ + a +P +  +++   l lv+GG+c ++
  MMETSP0890-20130614|26438_1 25 AEEDPVEQAPAPAAkAMNAQKLLRLVMGGVCFIA 58
                 223333333333331345667799*******765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00015
    PF03229.8   5 lfvvgaWvaalvtdltpkaalatgttatvgaanaaavanatganatsaaaastiaatvgapptdstvaaetPgpfl 80 
                  lf+ +a +a  v  l+ +a   t     ++a n    + +t+a ats+++        ++p ++st+a  +P p+ 
  MMETSP0890-20130614|26438_1 212 LFIGCALIAVGVMSLQGSAPDET-----TTANNQPRQPVSTSAPATSSDVVQGKVVDNDTPQEESTTADSAPPPST 282
                  78888888888888887765433.....344566678899999*******9999999************9999875 PP

>> PF05915.7  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.32   7.4e+02      73      92 ..      42      61 ..      35      79 .. 0.74
   2 ?    6.5   0.0    0.0028       6.4      20      68 ..     105     153 ..      92     181 .. 0.74
   3 ?    2.0   0.0      0.07   1.6e+02      48      68 ..     209     229 ..     204     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.32
    PF05915.7 73 gsqaivllvlGillfiPgfy 92
                 ++q++  lv+G ++fi  ++
  MMETSP0890-20130614|26438_1 42 NAQKLLRLVMGGVCFIAFIF 61
                 66788889999999996554 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0028
    PF05915.7  20 sfstlssseqkspChPlvkknvkvillavlLlllGllllvlgvliaanp 68 
                   +++    e+k+     ++ n+ ++++++lL+++ ++  + +++ ++ p
  MMETSP0890-20130614|26438_1 105 ALKKKDLDEKKTETWNTIEFNRTAVVMSFLLTFFSTVYYLAATWFIILP 153
                  34444444445555678999***************99999988877665 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.07
    PF05915.7  48 vlLlllGllllvlgvliaanp 68 
                  v+ l++G++l+ +gv+ + + 
  MMETSP0890-20130614|26438_1 209 VTYLFIGCALIAVGVMSLQGS 229
                  567999*******99877665 PP

>> PF12158.3  Protein of unknown function (DUF3592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.2      0.34   7.8e+02     141     145 ..      66      70 ..      18     173 .. 0.53
   2 ?    9.1   0.0   0.00041      0.94       8      54 ..     208     272 ..     201     278 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.34
    PF12158.3 141 iglfl 145
                  ig++l
  MMETSP0890-20130614|26438_1  66 IGVPL 70 
                  33322 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00041
    PF12158.3   8 glifllaglalmvygglllvak..................yllsgqwervpgtvlsselhrhrsd 54 
                  g+ +l++g+al+ +g+++l++                   +  + +   v+g+v+++++  + s+
  MMETSP0890-20130614|26438_1 208 GVTYLFIGCALIAVGVMSLQGSapdetttannqprqpvstSAPATSSDVVQGKVVDNDTPQEEST 272
                  8899***************9999999999999998888887777777889999999994444443 PP

>> PF09685.5  Tic20-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0099        23      41      78 ..      37      74 ..      25      94 .. 0.82
   2 ?    7.9   1.2    0.0013       2.9      35      80 ..     123     169 ..     118     184 .. 0.71
   3 ?   -3.2   0.0       3.5   7.9e+03      52      57 ..     212     217 ..     194     227 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0099
    PF09685.5 41 akealnfqislliygvvlgvlsllllligiglllllal 78
                 a++a+n q  l +++  + ++++++ +  ig++l+   
  MMETSP0890-20130614|26438_1 37 AAKAMNAQKLLRLVMGGVCFIAFIFSCATIGVPLWSYG 74
                 7899*******999999999999999999**9999765 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0013
    PF09685.5  35 pfvrehakealnfqislliygvvlgvlsllllligiglllllal.ll 80 
                  +f r  +++++++ ++ ++y+++++++++l ++ + +  ++l++ ++
  MMETSP0890-20130614|26438_1 123 EFNRTAVVMSFLLTFFSTVYYLAATWFIILPIADISFGCAYLLMaVF 169
                  6889999**************99999999883333322222222122 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.5
    PF09685.5  52 liygvv 57 
                  l++g +
  MMETSP0890-20130614|26438_1 212 LFIGCA 217
                  222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 965.29
//
Query:       MMETSP0890-20130614|26443_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-27   95.0   0.0    6.4e-27   94.3   0.0    1.3  1  PF04187.8 Protein of unknown function, DUF399


Domain annotation for each model (and alignments):
>> PF04187.8  Protein of unknown function, DUF399
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   4.7e-31   6.4e-27      15     212 ..      49     262 ..      35     263 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 4.7e-31
    PF04187.8  15 dvvllGEsHdnpehhrlqlrllkaleea..............rprlalglEmfprdqqpaldrylag.eldeeeleealdwqkgWpydwalYrplleaarearlpllalnvprevvrkvsreG...leslsea.erallpskaslp....seeyrelleeifaehcealeeelerfleaQslwDatMAesivralep.ggpvvviaGsgHvekglGvparla 212
                  +++++GE+H++   + l+  + k+l+e+              r+r al+lE ++rd+q+ +++yl++ e+  ++l   l+    + +d+  Y+p+ ++a+e++  ++a+n++++ v  vs+ G   l+++ ++ e++ l ++++ p    s++y ++l ++   ++ +++ +++++++ Q lwDatMA+s++r+ ++ g  +++++G++H+e+ lG+  +++
  MMETSP0890-20130614|26443_1  49 KFIFFGETHTDSVAQDLEILTYKKLTEQssrninnfgffqpkRKRWALALEFLSRDKQDFVNQYLKStEIPVSSL--FLE----Y-TDALRYGPITALAKERGSAIIAANASKRFVTYVSHYGpdvLNKIAQKgEDTDLLPPIPYPskplSAAYAQRLLTVWPDNQVNNQ-RRNNLIASQCLWDATMAHSVLRHQQNtGDAIFLVCGRFHIEYFLGIIDHIE 262
                  689**********************9666777777777777566*********************9977888777..443....3.37789********************************88877766655666666668843344567777777777776644444.369*********************666*******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.75
# Mc/sec: 1076.76
//
Query:       MMETSP0890-20130614|26456_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-30  104.4   0.7    4.2e-30  104.4   0.5    1.8  2  PF07202.8  T-complex protein 10 C-terminus
  ------ inclusion threshold ------
      0.029   13.9   0.3       0.06   12.9   0.2    1.5  1  PF01307.12 Plant viral movement protein


Domain annotation for each model (and alignments):
>> PF07202.8  T-complex protein 10 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.31   2.1e+03     109     109 ..      62      62 ..      26     110 .. 0.57
   2 !  104.4   0.5   6.2e-34   4.2e-30       7     115 ..     224     331 ..     219     336 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.31
    PF07202.8 109 D 109
                  D
  MMETSP0890-20130614|26456_1  62 D 62 
                  1 PP

  == domain 2    score: 104.4 bits;  conditional E-value: 6.2e-34
    PF07202.8   7 adGsrvilfpnGtkkeisadgktvivtffnkDikevladgrviYyyaeaqtthttypd.GlevlefpnkqtekrfkDGskeilfpdgtvkilnkdgeeeivypDGtvvrv 115
                  + G+r + ++nGt k +   g t +v+f n+D+k +   gr++Yyyaea+tth t p+ G ++ +fpn+qte +++DGsk i fpdgt ki+++dg+  +++pDG+vv  
  MMETSP0890-20130614|26456_1 224 TTGKRQVRYRNGTVKTVQ--GATSRVEFSNGDVKTTEVSGRIVYYYAEAKTTHETDPKtGTDIFHFPNGQTETHHSDGSKVIRFPDGTTKIVHADGSSKTTFPDGAVVLS 331
                  57*************996..5699*******************************9955***********************************************8754 PP

>> PF01307.12  Plant viral movement protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   8.8e-06      0.06      27      72 ..     272     320 ..     256     330 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.8e-06
   PF01307.12  27 ltrstlphvGDniHsLphGG...sYrDGtKsisYnspnksaslnssssl 72 
                  +t++t p++G +i ++p+G    +  DG+K i++   +++  + ++ss 
  MMETSP0890-20130614|26456_1 272 TTHETDPKTGTDIFHFPNGQtetHHSDGSKVIRFPDGTTKIVHADGSSK 320
                  78999**************7333699********888877755555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2683  (0.19624); expected 273.4 (0.02)
Passed bias filter:                      558  (0.0408133); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.19u 0.47s 00:00:01.66 Elapsed: 00:00:01.42
# Mc/sec: 570.40
//
Query:       MMETSP0890-20130614|26466_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-40  137.6   0.4      1e-24   86.9   0.1    2.9  2  PF12933.2 FTO catalytic domain
    2.2e-10   40.2   2.8      1e-09   38.1   1.9    2.0  1  PF12934.2 FTO C-terminal domain
  ------ inclusion threshold ------
        0.1   12.2   0.3        0.2   11.3   0.2    1.4  1  PF04778.7 LMP repeated region


Domain annotation for each model (and alignments):
>> PF12933.2  FTO catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.5e-16   6.9e-13       9      90 ..      42     120 ..      37     137 .. 0.80
   2 !   86.9   0.1   2.3e-28     1e-24     120     252 ..     127     265 ..     117     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 1.5e-16
                  HHH-TTEEEE-GGGS-HHHHHHHHHHHHHHHH----B--EE--...----EE-SSEEEEE-----EEEETTEEEE---------- CS
    PF12933.2   9 kssYsglvldepsalpeelHkeveeafdtlakkglllrDvvra...gkkvsltsvsRtLlGdrGltYkYlklRlFavPWkdedke 90 
                   + Y+g+v+++++  +    +e+++a+d l+   l+++Dv+++   g ++ +t+v+R+L+Gd G+tYkYl lR+F+ PW+ + ++
  MMETSP0890-20130614|26466_1  42 GTAYDGFVVKRTTFAT----DEIDAALDALD--PLYVYDVIQPmglGTTLARTKVRRCLIGDCGSTYKYLGLRMFSYPWSYNSST 120
                  5789999999887765....57888999886..589999999622266799****************************987763 PP

  == domain 2    score: 86.9 bits;  conditional E-value: 2.3e-28
                  HHHHH---------------EEEEEEE-S..S-SSS----S------EEEEEE---SB-TT--EEEEEEE--....---TTSEEE--E.TT--S-.............----EEE----.EEEE-TTHHHHEEEEEE-----.EEEEEEE-B- CS
    PF12933.2 120 leklrakeksedvessceynvtLinlmdpereaeveLkeeaafglGkisvsWHsDssLkdkstvAvYstske....eeeanswavalk.aldiet.............pallvPLkskd.lyymlddlnatHqHavlaGssa.RfsstHRvae 252
                   +klr++    d++ ++++ vtL+n mdp   +e eLk           vsWH Ds L+++st+ vY+ +       +e++ w++ l+  +d+e              pal v L+s + +y+ml+++n++HqHa+ aGs + R sstHRva+
  MMETSP0890-20130614|26466_1 127 NTKLREEALRLDAKAKADFSVTLVNCMDP---SEDELK-----------VSWHADSCLEHSSTIGVYQRIIRnekaRKEEEPWRIRLRvRIDAEGprrgtpekeechiPALSVSLESTSlCYWMLNEFNHHHQHAIQAGSAGrRISSTHRVAR 265
                  455666666789999*************9...555565...........9******************98763334556999******999*99999*******************98758*******************9879*******97 PP

>> PF12934.2  FTO C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   1.9   2.2e-13     1e-09      42     131 ..     293     404 ..     280     416 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.2e-13
                  HHHHHHHHTHHHHHH----GGGT--.TTHHHHHHHHHHHHHH---HHHHHHHHT----.....................---S--TTTTTTHHHHHHHHHHHHHHHHHHSSS CS
    PF12934.2  42 ihrEvEFeWlRqfwlqGkrhaklhd.yWtqriaeLteawdkmElvtrlvlkklkrase.....................tteqkeealdvllelLterkelReewaaRtrsk 131
                  +   +EFeWlRq+++qG  ha+     W+  i+eL ++w ++E+     +++l  a +                           +a+d+ +  +++r+  R+ wa+R +++
  MMETSP0890-20130614|26466_1 293 TLDIIEFEWLRQWFIQGAAHASRLAsSWRSTIDELAQFWLALEKLEFSRIRALIDATTscgddnnqhtsrrsrkayarvFSRGGLQAYDNAISDIKTRQTKRSLWAQRESDP 404
                  55669****************97776**************999876555555444333355677888888888777655455567888888999999999999999988776 PP

>> PF04778.7  LMP repeated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.3e-05       0.2      76     127 ..     388     439 ..     383     442 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.3e-05
    PF04778.7  76 qtrkdidefikdeknnPnyselvkdltskkdsknsvtkssnksdieaaneel 127
                  +tr+    +  + +++Pn+ + v   t kk  k++v +s++ + i++ + +l
  MMETSP0890-20130614|26466_1 388 KTRQTKRSLWAQRESDPNFWHAVASTTVKKKRKKTVVFSEDEKPIINDDASL 439
                  6788888888999******************************999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:00.67
# Mc/sec: 1895.63
//
Query:       MMETSP0890-20130614|26487_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-12   44.2  58.6    0.00027   20.0   8.0    3.5  3  PF04886.7 PT repeat
  ------ inclusion threshold ------
        9.5    5.9  19.2        1.2    8.8   9.4    1.8  2  PF05887.6 Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  11.9   2.8e-07    0.0019       2      35 ..       4      37 ..       1      38 [. 0.93
   2 !   14.0  20.6     3e-06      0.02       3      34 ..      41      72 ..      29      74 .. 0.83
   3 !   20.0   8.0   3.9e-08   0.00027       3      28 ..      65      90 ..      62      93 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.8e-07
    PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                 p a Pt++PTv PT++P a +T+  t++Pt++Pt
  MMETSP0890-20130614|26487_1  4 PIAKPTAEPTVTPTAAPNAKTTATLTSEPTAEPT 37
                 5589*****************************8 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3e-06
    PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34
                 Ta Pt++PTv+PT+ Pta+PT   ta+Pt++P
  MMETSP0890-20130614|26487_1 41 TATPTAKPTVEPTATPTAEPTVTQTAEPTAKP 72
                 78888888888888888888888889998888 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 3.9e-08
    PF04886.7  3 TaqPteqPTvqPTgqPtaqPTdqPta 28
                 Ta+Pt++P v PT+qPt  PT +Pt 
  MMETSP0890-20130614|26487_1 65 TAEPTAKPNVKPTAQPTIKPTVEPTT 90
                 67777777777777777777777775 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   8.1     0.064   4.4e+02      64     117 ..       8      59 ..       2      60 .. 0.38
   2 ?    8.8   9.4   0.00017       1.2      59     136 ..      29     110 ..      21     116 .. 0.50

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.064
    PF05887.6  64 peeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepe 117
                  p  e+   p   ++ +t    ++e+ +ep   +     p ++p  ep   p  e
  MMETSP0890-20130614|26487_1   8 PTAEPTVTPTAAPNAKTTATLTSEPTAEPTVTQ--TATPTAKPTVEPTATPTAE 59 
                  344444444444444444444444444444433..2333333333333333332 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00017
    PF05887.6  59 drddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepepepepepepep....epGaatlksvalpfavaa 136
                    ++  e+       +++++  ep  ++  e+   +  ep  +p+ +p  +p  +p  ep         t  s   p a a+
  MMETSP0890-20130614|26487_1  29 TSEPTAEPTVTQTATPTAKPTVEPTATPTAEPTVTQTAEPTAKPNVKPTAQPTIKPTVEPttssYSNYRTYHSTCAPNATAT 110
                  3444444444444455555555555555555555555555555555555555544444440000445567777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.81
# Mc/sec: 346.14
//
Query:       MMETSP0890-20130614|26482_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.75
# Mc/sec: 1236.52
//
Query:       MMETSP0890-20130614|26495_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-23   82.4   0.3    2.8e-23   81.8   0.2    1.2  1  PF11460.3  Protein of unknown function (DUF3007)
     0.0065   14.9   0.0     0.0078   14.7   0.0    1.1  1  PF09972.4  Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
      0.064   12.7   0.1       0.11   11.9   0.0    1.4  1  PF01277.12 Oleosin
      0.079   12.2   0.0       0.11   11.7   0.0    1.3  1  PF06570.6  Protein of unknown function (DUF1129)
       0.12   11.8   0.8       0.21   10.9   0.3    1.7  1  PF06305.6  Protein of unknown function (DUF1049)
        1.1    8.0   4.8        1.6    7.5   3.4    1.2  1  PF12698.2  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> PF11460.3  Protein of unknown function (DUF3007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.2   1.2e-26   2.8e-23       5     103 ..      78     170 ..      75     171 .. 0.95

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.2e-26
    PF11460.3   5 dvlliglgvlllggvaylllqalGldalsAgiasqavlvliv.vgWvlsYllRvvtgkmtymeqrkdyreaydkltqeelqkrleelseeekeallaeie 103
                   v+++ ++ l++  ++y++l ++Gld  + g+a + ++v++  v W+lsY++Rv+t++mty +q+k+y++a+       +qkr+eel+++e eall++ie
  MMETSP0890-20130614|26495_1  78 GVIVLTTIALVVPFLLYAALLQFGLDPNQTGVALSGIFVVGAtVLWTLSYVFRVFTKQMTYGQQLKQYEDAV-------IQKRFEELEDDEVEALLSDIE 170
                  588999999***************************9999877*****************************.......******************997 PP

>> PF09972.4  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.4e-06    0.0078     371     458 ..      39     135 ..      25     153 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.4e-06
    PF09972.4 371 wqksvkeearkkg.lfdeyrylrsnekkl...............gllilgilllilsfiliifllalfaglllaalvllvivlvigliiallllrkllgawtpe 458
                  ++ s+++e++ k+ l+ ++   r                     g+++l++++l++ f+l+   + l++gl  +++++ +  +++++  +l+ l+++++ +t+ 
  MMETSP0890-20130614|26495_1  39 ISTSLRNEHNLKKsLILRSTENR-----EeesrlpwyfdpgtygGVIVLTTIALVVPFLLY--AALLQFGLDPNQTGVALSGIFVVGATVLWTLSYVFRVFTKQ 135
                  55566666643320333333333.....2334448**************************..66666677777777666666677777777766666666653 PP

>> PF01277.12  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.11      29     101 ..      75     151 ..      73     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
   PF01277.12  29 tvialavatPlfviFSPvlVPAaiaigL..lvtGflasgaf..Gltalsslswllkyvrkkeaasadqldqakrrlk 101
                  t+ +++v t + ++   +l  A++  gL    tG++ sg f  G t l  ls++++ ++k+ + +++ +++ +  ++
  MMETSP0890-20130614|26495_1  75 TYGGVIVLTTIALVVPFLLYAALLQFGLdpNQTGVALSGIFvvGATVLWTLSYVFRVFTKQMTYGQQLKQYEDAVIQ 151
                  555666666666666556667778888844579******86558899999*********999988888888776555 PP

>> PF06570.6  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.8e-05      0.11      87     143 ..      85     142 ..      48     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.8e-05
    PF06570.6  87 lllgifallngitalfskkkqsas.GlitlllvslvgGlamvyvyriltrskkkkkrp 143
                  + l++  ll++++  f+ + +++  +l  +++v++++ + + yv+r++t+++  +++ 
  MMETSP0890-20130614|26495_1  85 IALVVPFLLYAALLQFGLDPNQTGvALSGIFVVGATVLWTLSYVFRVFTKQMTYGQQL 142
                  34555567788888888744444479************************97777665 PP

>> PF06305.6  Protein of unknown function (DUF1049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   9.1e-05      0.21      20      66 ..     107     151 ..      97     153 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.1e-05
    PF06305.6  20 LslllliafllGallgl.Llsvlfllklrrqlrrlqkqlkklekeldq 66 
                   +++l+  f++Ga + + L  v++++  +++      qlk++e ++ q
  MMETSP0890-20130614|26495_1 107 TGVALSGIFVVGATVLWtLSYVFRVFTKQMTY---GQQLKQYEDAVIQ 151
                  6899*************555555666666666...4566667666655 PP

>> PF12698.2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.4   0.00072       1.6     210     271 ..      81     141 ..      74     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00072
    PF12698.2 210 lgdllvgliqlllilll.afglegipfgnlllll.llfllfglayialgyllsslfksestaql 271
                  + + ++ ++++ll+ +l  fg   +++++ +++l ++f++++ +   l+y++  ++k+ + +q+
  MMETSP0890-20130614|26495_1  81 VLTTIALVVPFLLYAALlQFG---LDPNQTGVALsGIFVVGATVLWTLSYVFRVFTKQMTYGQQ 141
                  344455567777777754788...9999***9999************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       636  (0.0465184); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.55s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 631.77
//
Query:       MMETSP0890-20130614|26499_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   18.6   0.1     0.0015   18.0   0.1    1.4  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.1e-07    0.0015      84     243 ..       1     136 [.       1     155 [] 0.60

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-07
    PF03567.9  84 fvRdPfeRllSayrnkcvgdkrrgatwcgrlivckgrlpacyegddwsgvsfeeFleclsnlaperernnrhwap..acdlctrmladydlvgcyetleedlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelY 243
                  ++R+PfeRl+S y +    d  ++++  g++++  g+         + +  +  Fl   ++        ++h +    + l +  l+++++vg++e+ +  +    +l +   ++++++    ef       ++++++n+ + + + ++l ++ ++r ++ Y
  MMETSP0890-20130614|26499_1   1 MLREPFERLVSGYDDHYH-DCGKRCH--GQDLLYYGK---------QIQGIYLKFLLGSAKMR------EMHYNAskLVPLAVSRLEQFTFVGILEEWDLSVCLCHALFGY--RRGMPI--NAEFTA----IRSSSKHNAITIQVRSKQLRQDAIERARKNY 136
                  68*************993.2223333..355555555.........34567878877555555......345444437779999999*********999888888888888..667766..455544....2222222222222222344444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.45s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 589.58
//
Query:       MMETSP0890-20130614|26506_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-16   57.8   0.1    3.2e-14   52.7   0.1    2.1  1  PF07258.9 HCaRG protein


Domain annotation for each model (and alignments):
>> PF07258.9  HCaRG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.1   2.3e-18   3.2e-14       4     177 ..       2     196 ..       1     197 [. 0.77

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 2.3e-18
    PF07258.9   4 lnklssskfkellrqvlesllgkenie...kveklaadakiee.eelkalvaalstllksaakhdvdeeqlsaeLeqlklpkehaealskvyk..........enkkklreslaktslr...lphLedlsWRvdvklssselqe..vnsPvilleLklqng..ggssetvtfelseeklqellkelkeaqkelea 177
                  ln++  + + +l + vle+l + +++    +v ++a++++i   + l++ v++l  ll+   + ++++ +l ++   l+l+k ha+al +++           + k+++  ++ak +++   l +L dl+WR++v+  ss+ ++  + + +++++L l ++  + + e + +el+++++++ll++l++a++ +++
  MMETSP0890-20130614|26506_1   2 LNGFQPNDLDDLATLVLEHLSSMDSKGliaAVSNFAKSHGIKNmGVLESGVRGLLLLLQACGRENLTAIELAHDALRLGLTKAHAAALENSWRtfaakssaaqQLKEDVDVHIAKDDIDeetLRSLVDLEWRFGVTCISSHNSSepIGKTFLQVKLVLDKNkdKTQLEYLELELTLPQFYDLLANLERAKAAVDQ 196
                  6778888888899999999885555558888899999988765158888*******************************************7221111111112222222233333332235568888******97666655547***************999999***********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.78
# Mc/sec: 632.88
//
Query:       MMETSP0890-20130614|26509_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-38  132.1   0.0    1.7e-38  131.7   0.0    1.1  1  PF03853.10 YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> PF03853.10  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   1.2e-42   1.7e-38       4     173 .]      43     204 ..      41     204 .. 0.96

  Alignments for each domain:
  == domain 1    score: 131.7 bits;  conditional E-value: 1.2e-42
   PF03853.10   4 sseeLmenagravaevirallesnaekrvlvlcGpgnnGgdGlvaArhLaqegakvdvllleeeeklsedakkaleilkkaggkvveeepeedleeaispadlviDAllGiglr.gelreelaeliekinasealvlavDiPSGldadtgavsgaavkadvtvtfgapkqg 173
                  s + Lme ag +va++ir  +  ++++rvl+++GpgnnGgdGlvaArhL+  g++  v  l ++++ +  +++ +++++ ++++v+   p  ++      +dl+ D+++G+ ++ g+ r+++ ++++++  s++++++vDiPSG+++++g +   a+++ + ++++apk++
  MMETSP0890-20130614|26509_1  43 SVDSLMELAGLSVAAAIRDAY-PPKGQRVLICAGPGNNGGDGLVAARHLKFFGYEPMV--LYPKQSEKLLFRQLVSQMELMRIQVIDAIPMTEQ------YDLILDCVFGFSFSgGKPRAPFDQILNEMTNSKKPIISVDIPSGWHVEQGPPDTDAIQPSILISLTAPKHC 204
                  6689*****************.**********************************99..7777899999****************99999987......**************788899*************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.79
# Mc/sec: 867.54
//
Query:       MMETSP0890-20130614|26553_1  [L=893]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-41  136.9  20.5    2.7e-07   30.1   0.0   10.5 11  PF00400.27 WD domain, G-beta repeat
    1.8e-10   40.5   0.8    3.9e-10   39.4   0.5    1.5  1  PF04003.7  Dip2/Utp12 Family
  ------ inclusion threshold ------
      0.065   11.4   0.3        3.7    5.6   0.0    2.6  3  PF02239.11 Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.18   8.4e+02      26      38 ..      76      88 ..      76      89 .. 0.89
   2 !   28.6   0.1   1.7e-10   7.5e-07       8      39 .]     100     131 ..      97     131 .. 0.96
   3 !   18.5   0.0   2.7e-07    0.0012       4      39 .]     138     172 ..     135     172 .. 0.95
   4 !    5.1   0.0    0.0043        20       2      38 ..     177     216 ..     176     217 .. 0.92
   5 !   14.0   0.1   7.1e-06     0.032       7      39 .]     363     394 ..     358     394 .. 0.93
   6 !   12.5   0.0     2e-05     0.093      16      37 ..     416     438 ..     413     440 .. 0.94
   7 !    8.5   0.0   0.00037       1.7      12      38 ..     458     487 ..     454     488 .. 0.92
   8 ?   -3.6   0.0       2.5   1.1e+04      24      37 ..     525     538 ..     511     538 .. 0.85
   9 !   15.6   0.0   2.2e-06    0.0098       6      38 ..     549     581 ..     545     582 .. 0.96
  10 !   30.1   0.0   5.9e-11   2.7e-07       5      39 .]     590     624 ..     586     624 .. 0.93
  11 !    8.2   0.1   0.00045         2       8      38 ..     637     666 ..     631     666 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.18
                 EEEEETTSEEEEE CS
   PF00400.27 26 lasgSrDgtirlW 38
                 la + ++g +r+W
  MMETSP0890-20130614|26553_1 76 LAIAYANGLVRVW 88
                 688999******* PP

  == domain 2    score: 28.6 bits;  conditional E-value: 1.7e-10
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   gH +++++++++p+  llasg+++g + +Wd
  MMETSP0890-20130614|26553_1 100 AGHRGAIESLCWCPSALLLASGGANGDVFVWD 131
                  69*****************************9 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 2.7e-07
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   ++lrgHt++ t++++ ++ ++l+s +r   ++lWd
  MMETSP0890-20130614|26553_1 138 RTVLRGHTKAATDLCWLDT-RFLLSTGREAQLKLWD 172
                  689****************.***************9 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0043
                  EEEEEEESSSSSEEEEEEESS....STEEEEEETTSEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspd....gpllasgSrDgtirlW 38 
                  +c++t++ H +p  +++   d     +++a+++ D+ +r +
  MMETSP0890-20130614|26553_1 177 DCIQTISTH-DPLLALDSVYDtakkEHRIATAGIDRELRCF 216
                  5999999**.**************************99987 PP

  == domain 5    score: 14.0 bits;  conditional E-value: 7.1e-06
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   +gH+s+V++++++ d + +a +   g++++W+
  MMETSP0890-20130614|26553_1 363 TSGHKSAVRSIDVNGDNSAIAAATI-GSVKIWS 394
                  68***********************.******7 PP

  == domain 6    score: 12.5 bits;  conditional E-value: 2e-05
                  EEEEESS.STEEEEEETTSEEEE CS
   PF00400.27  16 cvafspd.gpllasgSrDgtirl 37 
                  c++f p+ + +la g +Dg++r+
  MMETSP0890-20130614|26553_1 416 CIKFVPPqCAFLAVGADDGSVRI 438
                  **********************9 PP

  == domain 7    score: 8.5 bits;  conditional E-value: 0.00037
                  SSEEEEEEESS...STEEEEEETTSEEEEE CS
   PF00400.27  12 spVtcvafspd...gpllasgSrDgtirlW 38 
                   +V+++++ ++   +++l+ g++D+ +r W
  MMETSP0890-20130614|26553_1 458 QSVWALDVVQTgeyQSYLCAGGADKMVRTW 487
                  58999999999*****************99 PP

  == domain 8    score: -3.6 bits;  conditional E-value: 2.5
                  TEEEEEETTSEEEE CS
   PF00400.27  24 pllasgSrDgtirl 37 
                  +lla +  D +i++
  MMETSP0890-20130614|26553_1 525 SLLAIATLDASIKI 538
                  57999999999997 PP

  == domain 9    score: 15.6 bits;  conditional E-value: 2.2e-06
                  EEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   6 tlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  +l+gH+ +V c++   d  l a++++D++i+ W
  MMETSP0890-20130614|26553_1 549 SLYGHSLGVLCLDAPTDLALAATAGADKSIKFW 581
                  79******************************* PP

  == domain 10    score: 30.1 bits;  conditional E-value: 5.9e-11
                  EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++  gH ++Vt++ f p  ++l++gS+D  +++Wd
  MMETSP0890-20130614|26553_1 590 RSVLGHDAAVTSLVFVPQTHYLFTGSKDALVKMWD 624
                  5667******************************9 PP

  == domain 11    score: 8.2 bits;  conditional E-value: 0.00045
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlW 38 
                   gH s ++++a   d   l s+++D++i  W
  MMETSP0890-20130614|26553_1 637 CGHVSEIWSLAAGSD-GTLYSAGADRSIIKW 666
                  69*************.***********9766 PP

>> PF04003.7  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.5   8.6e-14   3.9e-10       2     104 ..     763     875 ..     762     880 .. 0.93

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 8.6e-14
    PF04003.7   2 eeelvrkvlekippsdiedtlasLpfsyvpklLkfLaellaaedsp.............hlefllrwlkallsaHgkalqaqapsllpaLrslqkvlrrrlkdlakllelnvykLd 104
                  +e ++ + l++ip +d+e++++ Lp+  v +lL+f++  l  ++sp              le + r++++ + +H +a  a+   l++ L+sl+++lr++l++++ l + n+++++
  MMETSP0890-20130614|26553_1 763 PETYIINRLNTIPTTDLERAVLLLPIHQVAQLLNFIDLHL--TSSPtlekrertkdldlDLEICARVVNFAIAIHYRAVAAH-APLREMLTSLRHNLRTNLDHHRELFGSNLAAIR 875
                  57899999******************************55..5555589*********************************.9***************************99887 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0052        24      46      74 ..     154     182 ..     121     198 .. 0.76
   2 ?   -3.8   0.0      0.56   2.5e+03      11      30 ..     429     448 ..     425     459 .. 0.62
   3 ?    5.6   0.0   0.00082       3.7      38      95 ..     598     658 ..     585     661 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0052
                  -.--EEEEE---SEEEEEETTSSSEEEEE CS
   PF02239.11  46 sdgRyvyvigRDgkltliDLwakeivaev 74 
                   d R+++ +gR+++l+l DL a   ++++
  MMETSP0890-20130614|26553_1 154 LDTRFLLSTGREAQLKLWDLEALDCIQTI 182
                  5799**************99998877776 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.56
                  EBTT---EEEE-----SEEE CS
   PF02239.11  11 verdagkvalidgdskeila 30 
                  v +d+g+v+++d +s + + 
  MMETSP0890-20130614|26553_1 429 VGADDGSVRILDVASGRAVV 448
                  55677777777766655444 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.00082
                  --EEEE---.--EEEEE---SEEEEEETTSSS.EEEEEE--..-B----EE--TTT-EEE- CS
   PF02239.11  38 lHisrvfasdgRyvyvigRDgkltliDLwake.ivaevkaG..lnarsvavSqedryvivg 95 
                    +s vf ++  y+++ ++D+ +++ D  ++e  ++ +k G  ++  s+a   ++++  +g
  MMETSP0890-20130614|26553_1 598 AVTSLVFVPQTHYLFTGSKDALVKMWDADRQEpLIQVLKCGhvSEIWSLAAGSDGTLYSAG 658
                  457999***9*********************999999999944466788888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.20u 0.20s 00:00:01.40 Elapsed: 00:00:01.39
# Mc/sec: 1539.53
//
Query:       MMETSP0890-20130614|26563_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   31.4   0.0    1.6e-07   31.2   0.0    1.1  1  PF00403.21 Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> PF00403.21  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.1e-11   1.6e-07       1      60 [.       4      64 ..       4      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.1e-11
   PF00403.21  1 tvrvpgmhCagCaakvekalselpgVysvkvdlgk..kkvvVegdieekllrkliekvekag 60
                 tv++p+m C +C  ++ +al +++gVy+++++lg   ++++V +d +   l+ l+++ e +g
  MMETSP0890-20130614|26563_1  4 TVYLPTMGCIACIDAIHRALYQVDGVYDADIKLGQvgGQATVYHDSDL-HLDILLQACERSG 64
                 899*******************************999*******9886.4455777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 257.26
//
Query:       MMETSP0890-20130614|26581_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.2   0.0    0.00022   21.1   0.0    1.0  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.6e-08   0.00022     121     171 ..       7      58 ..       2      78 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.6e-08
                  TEEEEEEECHHHC.TSSTTSHHHH.HHHHHHHHHHCCHHHHSEEEE---S--B CS
   PF03372.18 121 gktlalvntHltp.gnrlrqrder.allaeidkladdsrgspvilaGDfNsrp 171
                  +k  ++++tHltp + ++r  +e+  l a+ + + ++ +g+ + ++GD+N++p
  MMETSP0890-20130614|26581_1   7 EKNYHFLVTHLTPvDTKTRS-AEAvWLKARCQHILAKEDGAAIAIMGDLNAPP 58 
                  67789********6555554.444488888899999999999********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 332.13
//
Query:       MMETSP0890-20130614|26587_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-10   38.0   1.0    3.9e-06   26.3   0.3    2.2  2  PF00514.18 Armadillo/beta-catenin-like repeat
    0.00077   19.5   3.4     0.0046   17.0   1.9    1.9  1  PF13646.1  HEAT repeats
     0.0078   15.2   0.0      0.013   14.4   0.0    1.4  1  PF04826.8  Armadillo-like
  ------ inclusion threshold ------
        0.1   13.0   1.5        4.4    7.9   0.1    2.3  2  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.3   1.1e-09   3.9e-06       8      37 ..       1      30 [.       1      34 [. 0.92
   2 !   10.5   0.0   0.00011      0.38       1      39 [.      35      73 ..      35      75 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.1e-09
                 HHHCHHHHHHHHHHC-SSHHHHHHHHHHHH CS
   PF00514.18  8 vieaGavppLvqLLksgdeevqeeAawALs 37
                 + eaGa+ppLv+LL+sg    +e Aa+AL+
  MMETSP0890-20130614|26587_1  1 IAEAGAIPPLVNLLTSGTAAAKEKAAGALW 30
                 569**************************9 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00011
                 CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHH CS
   PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAawALsNL 39
                 + +nk ++ eaGa+  L +LL+sg    +e Aa+AL  L
  MMETSP0890-20130614|26587_1 35 NEKNKVTMAEAGAIFSLANLLTSGTAIAKEKAARALEDL 73
                 5789**********************9999999999765 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.9   1.3e-06    0.0046       1      80 [.       7      98 ..       7     100 .] 0.76

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.3e-06
    PF13646.1  1 leaLlaaLekdpdpevraaaieaLg..........qlgseealpaLlelLkdsdpevRraAaeaLgklg...dpealpaLlklldddedavvr 80
                 +++L+++L ++  +  +++a+ aL           +++++ a+  L  lL++  +  +++Aa+aL  l+     + ++a ++ +  d+++++r
  MMETSP0890-20130614|26587_1  7 IPPLVNLL-TSGTAAAKEKAAGALWclaaneknkvTMAEAGAIFSLANLLTSGTAIAKEKAARALEDLSkidLSNEIAAAKRDAGVDQSRKRR 98
                 68999999.6666666666666666555*99999999999*************************9876332455666666666667766665 PP

>> PF04826.8  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-06     0.013      17      83 ..      10      75 ..       3      84 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.9e-06
    PF04826.8 17 llallestedpliqeialitlgnsaaysfnqdiirelggipiianllsksnpevkekalnalnnlsv 83
                 l++ll s    + +e+a  +l   aa   n+ ++ e g i  +anll +  +  keka  al++ls+
  MMETSP0890-20130614|26587_1 10 LVNLLTS-GTAAAKEKAAGALWCLAANEKNKVTMAEAGAIFSLANLLTSGTAIAKEKAARALEDLSK 75
                 5555544.44556677777777777777888888888888888888888888888888888887775 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0013       4.4      29      52 ..       6      29 ..       2      34 .. 0.89
   2 ?    7.2   0.4     0.002       6.8       6      54 ..      27      72 ..      26      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0013
    PF13513.1 29 llpaLlelLeddddeVReaAawAL 52
                 ++p+L++lL++  +  +e Aa+AL
  MMETSP0890-20130614|26587_1  6 AIPPLVNLLTSGTAAAKEKAAGAL 29
                 799******999999999999998 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.002
    PF13513.1  6 aAawaLGrlaggeprllepavpellpaLlelLeddddeVReaAawALgr 54
                 +A+w+L+   ++e + +  a   ++  L +lL++  +  +e Aa+AL+ 
  MMETSP0890-20130614|26587_1 27 GALWCLA---ANEKNKVTMAEAGAIFSLANLLTSGTAIAKEKAARALED 72
                 6999996...88888888888888889999997766666********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 420.41
//
Query:       MMETSP0890-20130614|26591_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.4   0.0      0.059   13.3   0.0    1.2  1  PF00615.14 Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-06     0.059       4      41 ..      20      60 ..      17      91 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.3e-06
                 HHHTSS---HHHHHHHHTTTTH.HHHHHHHHHHHHCTS...- CS
   PF00615.14  4 slledqpgrslFreFlesefse.enleFwlaveefkka...k 41
                 +++ ++  + +Fr+F++ e    + le +la+  +k++   +
  MMETSP0890-20130614|26591_1 20 DVC-SSVFLTAFRQFMKDEAHAgHVLECYLACLAYKENpsyH 60
                 555.3457899*******98888*************993330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 367.44
//
Query:       MMETSP0890-20130614|26586_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.4  24.1       0.11   11.6  16.7    2.1  1  PF09507.5 DNA polymerase subunit Cdc27
  ------ inclusion threshold ------
      0.027   12.8  10.2       0.03   12.6   7.0    1.0  1  PF10243.4 Microtubule-binding protein MIP-T3
       0.16   11.4   8.9       0.19   11.1   6.2    1.1  1  PF09184.6 PPP4R2
       0.34    9.8  12.8       0.39    9.6   8.9    1.1  1  PF05460.8 Origin recognition complex subunit 6 (ORC6)
        2.3    7.4   5.2        3.1    6.9   3.6    1.2  1  PF04592.9 Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6  16.7   3.9e-05      0.11     268     379 ..      61     179 ..      25     180 .] 0.59

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.9e-05
    PF09507.5 268 dekekeftks......ekk.rqkrlessdseeete......ekekek.rkrlkkmmedededeemeivpespqeeeeseeseppnkkeeekeevtesgdgkrRkrrrVlkkktfkDeeGylVTkkv 379
                  ++  + ft        +k  ++k+ ++s+s+ +++       + k +  k  +++++d+d+d+e e +p+      ++e +++ ++ ++e+++v   ++   R     l  ktf+De GylVT+k+
  MMETSP0890-20130614|26586_1  61 QQSANTFTSFfcgggqKKSaQTKTSQKSKSNTSKNkpnplpPTAKPQdSKPRRRVLDDDDDDDENENAPPAT--NNKKEIQQSCDDDDKEPAKVAPPKSNAPR-----LVEKTFMDEKGYLVTEKI 179
                  222222222246666534446666666666666557778886666664677778889999998666666655..33333333333566666666555445555.....6677************96 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   7.0   1.1e-05      0.03     264     396 ..      37     175 ..      10     179 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
    PF10243.4 264 askseekktekeskaeaeqeakakasksktkkt.............nskeevqrertslrrpsarpasARpapPRvKrknveivlqndrqksgkivsnvileskksededdeqfvviaaaqaseiaeeeaeealeleeeekqGgLv 396
                  +++ ++  t+k++ ++ +  +  ++++++t  t             +++ + ++  ts+ +p++ p++A+p   + +r+    ++  d+++ + ++ n+++e ++s d+dd +  ++a ++ ++         +e +  +++G+Lv
  MMETSP0890-20130614|26586_1  37 NPQVSTMATTKTKPPAKPPATMREQQSANTF-TsffcgggqkksaqTKTSQKSKSNTSKNKPNPLPPTAKPQDSKPRRRVLDDDDDDDENENAPPATNNKKEIQQSCDDDDKEPAKVAPPKSNA------PRLVEKTFMDEKGYLV 175
                  4444444444444444444443333333333.347888888888777778888999***************88776677666666699*****************9999999766555544433......2223334556666665 PP

>> PF09184.6  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.2     7e-05      0.19     188     267 ..      77     154 ..      53     170 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7e-05
    PF09184.6 188 psedeeed.dpkeslsngsslnespdssqdkekkleeyyekesseaaadeddeakdsdvknkkaddeedddedsdyieeke 267
                  + +++++  + ++s+ +++++n +p + +++++k      ++  + ++de++ + ++  +nkk+ +++ dd+d++  ++++
  MMETSP0890-20130614|26586_1  77 KKSAQTKTsQKSKSNTSKNKPNPLPPTAKPQDSKPRRRVLDD--DDDDDENE-NAPPATNNKKEIQQSCDDDDKEPAKVAP 154
                  44444444488899999******************6664433..33333333.3346666777777777777776444444 PP

>> PF05460.8  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.9   0.00014      0.39     101     178 ..      53     159 ..      26     178 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00014
    PF05460.8 101 kpst................dpktlrkqlfsTPtKsktlasalsa.....sksssplkrrrklaneedgeeeeed.apswvstsir......dsrleisrt.spsks 178
                  kp++                   + +++++ T  Ksk+  s+ ++     ++++  +k+rr+  +++d+++e+e+  p++++ +        d + +++++ + s+ 
  MMETSP0890-20130614|26586_1  53 KPPAtmreqqsantftsffcGGGQKKSAQTKTSQKSKSNTSKNKPnplppTAKPQDSKPRRRVLDDDDDDDENENaPPATNNKKEIqqscddDDKEPAKVApPKSNA 159
                  33334444555556888888444444555555555555555555555877777777787777777777777777745655555555777776555555555333333 PP

>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.6    0.0012       3.1     143     229 ..      64     151 ..      55     159 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0012
    PF04592.9 143 katyceekCGnCsltsledldeckkvtleekdkpvekeprkdlekhhshrk.ldsekekhkhshehlgssslkesqkpdpdkpkepps 229
                   +t++  +CG    +s ++ +  k+ +   k+kp+   p+ + ++++ +r+ ld +   ++ ++  + ++++ke q++  d+ kep++
  MMETSP0890-20130614|26586_1  64 ANTFTSFFCGGGQKKSAQTKTSQKSKSNTSKNKPNPLPPTAKPQDSKPRRRvLDDDDDDDENENAPPATNNKKEIQQSCDDDDKEPAK 151
                  56888999***99999999988888888889999888666655544444441444455555555555577777878887888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       797  (0.0582943); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.70
# Mc/sec: 616.21
//
Query:       MMETSP0890-20130614|26608_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      117  (0.00855764); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.35s 00:00:00.63 Elapsed: 00:00:00.69
# Mc/sec: 177.12
//
Query:       MMETSP0890-20130614|26604_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-35  121.0   0.2    7.3e-35  120.3   0.2    1.2  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.2   5.4e-39   7.3e-35       5     268 ..      20     338 ..      17     359 .. 0.78

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 5.4e-39
   PF03016.10   5 lkVYvydlprrfnkdll...................kedaskeqswyetdqyslevilhkslkesr.cltsdpdeAdlfyvpfyaslsvlrlngtnaekeerdllpreleeilesqpyWnrsgGrDHvlvnsrd...............................eggsallrlpalnnntilvvvaegg...............................fsesqfrpgkDvvlPalfhpnsvdreesa....aaappakRktllffaGekrragksrsgairdklleeckassdvqcee.gneskqspen...ymellkssrFClvppGdtptsrrlfdallagCiPViisd 268
                   +VYvydlp+  +  l                     +     ++ ++t++ys+ +i++ +l++s+ ++t dp+eAdlfyvp+ + ++       ++++ e++ +++   e+  +++y n+   + H+++ ++                                +                       +                                + s +     +++P++ h++    + +        + ++Rk l++f G+ + +++   +a r++l + c++ +d+ ce   +++ ++       ++ + +++FC++p Gd+p +++l+d+ l gCiPVi+s+
  MMETSP0890-20130614|26604_1  20 PRVYVYDLPEFWD--LKplkletlrtlpaenseifgTRCEHGLHNEFATHMYSAPIIMLWRLLRSSqYRTFDPKEADLFYVPMWPKQK-------SQKAWESRCDKNINLEVERRLKYLNEETAHRHFFIVGKGhvkvggkcnawwknptgllrramrfayssdyG-----------------------TsnrtgqerygpyvlenerdvhqlgadvlvedRQNSAYPHLISIPYPSSIHVSRQSLNKRLpmdwIPNKDSRRKVLVSFVGGAHTQSTF--AAPRKRLRQDCAKAEDGLCEYfNYNHANGV-FtcgLHNYMSNATFCFQPGGDSPYRKSLYDSFLVGCIPVIFSQ 338
                  58*******5445..44669**************997777788999***********9999988888*********************.......555567888899999999999****************9988888666664444444444444444333330.......................2334455556666666666666666666644334555555566********99855444447787889999***********9999888..9*******************9433333333.2588*************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.61
# Mc/sec: 1716.73
//
Query:       MMETSP0890-20130614|26617_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       658  (0.0481276); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:00.88
# Mc/sec: 1595.76
//
Query:       MMETSP0890-20130614|26646_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.35s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 204.28
//
Query:       MMETSP0890-20130614|26655_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-05   25.3   0.9    1.8e-05   24.5   0.6    1.4  1  PF03992.11 Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> PF03992.11  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.6   1.3e-09   1.8e-05       4      77 ..     103     176 ..     100     177 .. 0.95

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.3e-09
                  EEEEEEEEGGHHHHHHHHHHHHHHHHHTT-----EEEEEECTTSCEEEEEEEEESSHHHHHHHHTSHHHHHHHH CS
   PF03992.11   4 vvnefkvkpgaeeafeeafaeaaesllaeepGflgyellrstddpdevvvieeWeseaafrahlksphfkaahe 77 
                  + ++++v p++ e+f+++ ++  e ++a ep +l+y++ + +  p+e+ + e++  e  f++h ++  f+++++
  MMETSP0890-20130614|26655_1 103 LNVKLSVLPERIEDFLRVIKQNEEYVRAYEPRNLRYSWGQAEAHPNEFHFQEQFVEEVGFQEHINAANFQKWNA 176
                  678899****************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.73
# Mc/sec: 679.51
//
Query:       MMETSP0890-20130614|26654_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1361  (0.0995465); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                       184  (0.0134582); expected 13.7 (0.001)
Passed Fwd filter:                        97  (0.00709479); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.02u 0.43s 00:00:04.44 Elapsed: 00:00:02.42
# Mc/sec: 564.43
//
Query:       MMETSP0890-20130614|26661_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0092   16.0   4.0      0.013   15.5   2.8    1.3  1  PF13339.1  Apoptosis antagonizing transcription factor
  ------ inclusion threshold ------
        0.4   10.8   5.4        8.1    6.6   0.2    3.0  3  PF13907.1  Domain of unknown function (DUF4208)
        0.4    9.5   4.1       0.36    9.7   0.2    1.9  2  PF01544.13 CorA-like Mg2+ transporter protein
       0.46   10.2   2.9       0.52   10.1   0.0    2.5  3  PF12283.3  Bacteriophage protein K
       0.49    9.4   4.3       0.64    9.0   3.0    1.2  1  PF04502.8  Family of unknown function (DUF572)
       0.83    7.8   6.2       0.27    9.4   0.6    1.9  2  PF03961.8  Protein of unknown function (DUF342)
        1.1    8.9  10.3        4.4    7.0   1.8    2.4  2  PF02185.11 Hr1 repeat
        1.1    9.0   4.6        1.3    8.8   1.7    2.3  2  PF04508.7  Viral A-type inclusion protein repeat
        5.7    7.3   8.5         18    5.7   1.5    2.4  2  PF13600.1  N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> PF13339.1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.8   8.6e-06     0.013      24     123 ..      35     140 ..       8     142 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.6e-06
    PF13339.1  24 klQkaltaanslp.qeealsefk...egneelqealksaekalkklldtlleLreaLle.....edkksseeeesesakkrkraktektsldelweelekleerlkpyr 123
                  k+ kal++  +lp ++ + s+ +     +  + +al+++e+++++ l++l  Lr+ L e        + s+ ++ e++++++r   ++ +++e  e+l++l+erl +  
  MMETSP0890-20130614|26661_1  35 KMKKALAQYERLPiKHLSPSKQDqiaPAEHPTLKALTQTEDQAQSSLNKLRVLRDRLNEialnsMRPSLSNVDQPEEEDEQQR---ATGDIKEALEKLSNLNERLDRLE 140
                  899**********776555544455578888999*************************998873334444444555555555...56677777777777777666544 PP

>> PF13907.1  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.075   1.1e+02      39      70 ..       9      40 ..       3      51 .. 0.79
   2 ?    2.8   0.2     0.077   1.2e+02      27      56 ..      64      94 ..      48      97 .. 0.76
   3 ?    6.6   0.2    0.0053       8.1      14      43 ..     110     139 ..      97     142 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.075
    PF13907.1 39 glskeeklkklkkeLlkiGdhIesilkkkkka 70
                 +ls+ + +++  k L  +G+  e+ilk kk+ 
  MMETSP0890-20130614|26661_1  9 ELSDGDDMSTADKTLACVGHAYEQILKMKKAL 40
                 67888888999999999999999999988754 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.077
    PF13907.1 27 kksLkkLkklseglske.eklkklkkeLlki 56
                 + +Lk L + +++ ++  +kl+ l++ L +i
  MMETSP0890-20130614|26661_1 64 HPTLKALTQTEDQAQSSlNKLRVLRDRLNEI 94
                 5678999998666555559999999998876 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0053
    PF13907.1  14 kdeaeckellkpvkksLkkLkklseglske 43 
                  ++e+e ++   ++k++L+kL++l+e l++ 
  MMETSP0890-20130614|26661_1 110 EEEDEQQRATGDIKEALEKLSNLNERLDRL 139
                  556667788899*************99986 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00024      0.36     133     218 ..       6      94 ..       3     106 .. 0.77
   2 ?    1.6   0.2     0.068     1e+02     201     218 ..     122     139 ..      98     142 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00024
   PF01544.13 133 eldeledeledetkkellreilqlrrelvrlrrallplrdvlkrllrrkdkkllteedkeylrdll...delerllemaealrerlrsl 218
                  e++el+d  + +t ++ l  +    +++++ ++al++ +++  + l+ + ++++ +++++ l+ l+   d++++ l+ + +lr+rl+ +
  MMETSP0890-20130614|26661_1   6 EINELSDGDDMSTADKTLACVGHAYEQILKMKKALAQYERLPIKHLSPSKQDQIAPAEHPTLKALTqteDQAQSSLNKLRVLRDRLNEI 94 
                  78889999999999999999999999**************9999999999999999997775555411144444666666666666554 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.068
   PF01544.13 201 lerllemaealrerlrsl 218
                  ++ +le +++l erl++l
  MMETSP0890-20130614|26661_1 122 IKEALEKLSNLNERLDRL 139
                  333333344444444333 PP

>> PF12283.3  Bacteriophage protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.2   6.4e+03      23      30 ..       2       9 ..       2      11 .. 0.72
   2 ?   10.1   0.0   0.00034      0.52      30      52 ..      35      57 ..      31      60 .. 0.90
   3 ?   -0.9   0.0      0.89   1.3e+03      31      41 ..      77      87 ..      70     104 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.2
    PF12283.3 23 GLLvENEk 30
                 GLL+E ++
  MMETSP0890-20130614|26661_1  2 GLLAEINE 9 
                 89999544 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00034
    PF12283.3 30 kirsiLkkLEklLLrdLSPSsqd 52
                 k++  L++ E+l ++ LSPS qd
  MMETSP0890-20130614|26661_1 35 KMKKALAQYERLPIKHLSPSKQD 57
                 67889****************98 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.89
    PF12283.3 31 irsiLkkLEkl 41
                  +s L+kL +l
  MMETSP0890-20130614|26661_1 77 AQSSLNKLRVL 87
                 57777777665 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.0   0.00042      0.64     115     208 ..      40     134 ..      17     142 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00042
    PF04502.8 115 eeqverlekeeeeeeagdamkklEkrtad..skremevlerLeeLkelqsrkadvavesmLealrreekkeeeeeeeedeelikslslgleseedr 208
                   +q erl  ++    ++d++   E+ t +   ++e +++ +L++L+ l+ r +++a++sm  +l++  + eee+e+++    ik++ ++  s+ ++
  MMETSP0890-20130614|26661_1  40 LAQYERLPIKHLSPSKQDQIAPAEHPTLKalTQTEDQAQSSLNKLRVLRDRLNEIALNSMRPSLSNVDQPEEEDEQQRATGDIKEALEK-LSNLNE 134
                  4455555555555778888888899887622578888999********************99998888888888877776666666333.333333 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.6   0.00018      0.27     341     404 ..      31      94 ..      26     106 .. 0.89
   2 ?    2.3   0.5     0.027        40     367     402 ..     105     140 ..      87     143 .] 0.48

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00018
    PF03961.8 341 eeleeleeeleklkkk.lkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkee 404
                  e++ ++++ l ++++  +k+l++ ++++q+ + +  +l+ l++t  + +++l++l+  +++l+e 
  MMETSP0890-20130614|26661_1  31 EQILKMKKALAQYERLpIKHLSP-SKQDQIAPAEHPTLKALTQTEDQAQSSLNKLRVLRDRLNEI 94 
                  67889999999999999999999.88999***************************999999885 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.027
    PF03961.8 367 gqlesekkeqleklletkeklkeeleeleaelkelk 402
                  +  ++e+++++++++ + ++  e+l++l+++l++l+
  MMETSP0890-20130614|26661_1 105 NVDQPEEEDEQQRATGDIKEALEKLSNLNERLDRLE 140
                  223344445555555555555555555555555554 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.8    0.0029       4.4      34      66 ..      69     101 ..      30     105 .. 0.81
   2 ?    6.7   1.1    0.0036       5.5      34      62 ..     114     142 ..      95     143 .] 0.78

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0029
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11  34 vlqeaesklreseqkielLkeqLeklqkrsqns 66 
                  +l + e++ ++s +k+  L+++L +    s+ +
  MMETSP0890-20130614|26661_1  69 ALTQTEDQAQSSLNKLRVLRDRLNEIALNSMRP 101
                  68899*******************988777665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0036
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11  34 vlqeaesklreseqkielLkeqLeklqkr 62 
                    q+a++ ++e+  k++ L+e+L +l+ r
  MMETSP0890-20130614|26661_1 114 EQQRATGDIKEALEKLSNLNERLDRLENR 142
                  469999*******************9875 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.3   1.1e+04       4      17 ..       8      10 ..       5      12 .. 0.47
   2 ?    8.8   1.7   0.00086       1.3       2      22 ..     121     141 ..     120     142 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 7.3
    PF04508.7  4 drlRrkIsdLekqL 17
                 ++           L
  MMETSP0890-20130614|26661_1  8 NE-----------L 10
                 33...........3 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00086
    PF04508.7   2 EldrlRrkIsdLekqLsdcrr 22 
                  +++++ +k+s+L+++L++ ++
  MMETSP0890-20130614|26661_1 121 DIKEALEKLSNLNERLDRLEN 141
                  799**************9875 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.4     0.015        22      62      97 ..      57      92 ..      44      98 .. 0.80
   2 ?    5.7   1.5     0.012        18      64      91 ..     107     141 ..      90     143 .] 0.51

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.015
    PF13600.1 62 ekdadaaseelaeleaelraledelarleaekeale 97
                 ++ a+a+++ l++l +  +++++ l++l+  ++ l+
  MMETSP0890-20130614|26661_1 57 DQIAPAEHPTLKALTQTEDQAQSSLNKLRVLRDRLN 92
                 445689999999999999999999999987777665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.012
    PF13600.1  64 dadaase.......elaeleaelraledelarlea 91 
                  d +++++       +++e+ ++l+ l+++l+rle+
  MMETSP0890-20130614|26661_1 107 DQPEEEDeqqratgDIKEALEKLSNLNERLDRLEN 141
                  33333340111223666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       857  (0.0626829); expected 273.4 (0.02)
Passed bias filter:                      557  (0.0407402); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.65
# Mc/sec: 527.20
//
Query:       MMETSP0890-20130614|26674_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 410.34
//
Query:       MMETSP0890-20130614|26675_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       611  (0.0446899); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.92
# Mc/sec: 364.66
//
Query:       MMETSP0890-20130614|26677_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-48  163.6   0.0    4.2e-48  163.4   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0     3e-52   4.2e-48       2     276 ..      11     307 ..      10     314 .. 0.90

  Alignments for each domain:
  == domain 1    score: 163.4 bits;  conditional E-value: 3e-52
   PF00248.16   2 lglGtwslgndeisedealellraaleaGinlfDtAeyYgkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveileka....kkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd...............aqdaleelselakehgvslaqlalryalsr...pavgsvipgassieqleenlkal....elelseeeia 276
                   +lG +++ + ++ ++ea+e+l+++++ G+  +DtA++Y +g  e+llge+l++ r + ++++iatK ++ s+++ +l++e+++++l++sL  lg +++D+++lh pd ++p i e+l a++e+ k Gk   +G+Sn+ ++++  +    ++ +   ++v q  yn +++++e++l+++++++++ ++ay pl gG+ltgk ++++    ++  +                ++da++ + + ++++++s+   alr++  +   ++   +i+gas+ ++l +nl +l    + +l+++ ++
  MMETSP0890-20130614|26677_1  11 TILGSMTFAS-QTGKAEAIEMLDKFIQIGVE-VDTARMYNHGLTENLLGELLNE-RPEFQKLRIATKANPFSTHDKSLTAESVHRQLDQSLNALGKKCVDIFYLHAPDQETP-IMETLHAVNEAYKNGKFQEFGLSNYQAWEVAFIhakcRENNFPLPTVYQGMYNAITREVERELFPCLRAHNIRFYAYNPLCGGALTGKLDRSKLDSLQDGSRFdlsnkmyrdrylqkvQLDAIDLFVQACSNQNISPTSAALRWLKFHsklSNSDGIIIGASKMSHLSDNLLVLhqeyDSPLPDSILS 307
                  589******9.*******************9.6*********************.99999****************************************************.**************************888877744545555555********************************************98876555444444479*****************************************9977778999***************99954444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.94
# Mc/sec: 848.92
//
Query:       MMETSP0890-20130614|26692_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-27   96.9   1.0    1.3e-27   96.6   0.7    1.1  1  PF00106.20 short chain dehydrogenase
    2.1e-21   76.7   0.1      3e-21   76.2   0.0    1.2  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    2.1e-08   33.9   0.1    3.2e-08   33.3   0.1    1.2  1  PF08659.5  KR domain
    3.4e-07   29.8   1.3    7.4e-07   28.7   0.8    1.6  1  PF01370.16 NAD dependent epimerase/dehydratase family
     0.0043   15.6   0.2     0.0072   14.9   0.1    1.4  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
     0.0085   16.3   0.3      0.019   15.2   0.2    1.6  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.025   14.4   0.1    1.5  1  PF13460.1  NADH(P)-binding
      0.053   13.4   0.2       0.13   12.2   0.1    1.6  1  PF13450.1  NAD(P)-binding Rossmann-like domain
      0.095   11.7   0.6       0.13   11.3   0.4    1.3  1  PF00291.20 Pyridoxal-phosphate dependent enzyme
        0.4    9.4   3.4       0.21   10.2   0.3    1.8  2  PF04321.12 RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.7   9.4e-31   1.3e-27       1     166 [.      21     187 ..      21     188 .. 0.91

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 9.4e-31
                  -EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE.--TTSHHHHHHHHHHHHHH----SEEEEE---TT.-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH....HH..---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
   PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvva.cDvadrdalaallaeirkalgpldgvvhnagvld.dgpleeltperlervlapkvtgawllheltld....ad..lgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                  ++++iTG++g +G a A++L++ega   +   r+     a+e++++l   +ae +vv  +Dv++ +a++ ++++ ++ +g++d  ++nag     +p ++ +p ++++v +++v+g +++ ++++     ++  +g++v+++S+a+    p++ aYa++kaa+ +l+++ ++++
  MMETSP0890-20130614|26692_1  21 KVAIITGAAGNFGMACAERLAKEGALIALYDIRS-----AEEVRTRLI--NAEKHVVEiVDVTNYKAVEDAVQRTVQVFGRIDYCFNNAGYQGkFTPSADYDPLDFAKVQQVNVNGIFHMLKAVASimkiQSprGGVIVNTASMAAHSAPPNMPAYATSKAAVYHLTRAAAKDL 187
                  799********************88666666666.....888877777..6777777779*******************************9989999*****************************9883357***********************************99886 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   2.2e-24     3e-21       6     243 .]      30     276 .]      27     276 .] 0.85

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 2.2e-24
                  -----HHHHHHHH---EEEE---HH--------.-----------.---TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB---....--EEEEEE-------------------THHHHHHHHHH----S---EEEEEE-.......---------------.......----------------CCC---HHHHHCSGGGTT----EEE-----T CS
    PF13561.1   6 nsigwaiakalaeaGaevilttwvpaklkkkvq.elakelpadvv.plDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneg....gSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaG.......plktraakaiggiek.......mieyseenapLgkelsaeevaeaaafLlsdlasaiTgetlyvDgGln 243
                    +g+a+a+ la++Ga ++l  +  a+   +v+ +l +  +++vv  +Dvt+ + v+  +++  + + g+iD+  + ++++ +     p  + +  ++ +  ++++  +  +lka+ +  +m+ +    g iv +  +a++ + p++  ++ +KAa+ +ltR  A++l++ + iRvn is         ++++ + +a+++ +        + +++ e++p+++  s++ev   ++fL+sd as  Tg  +++ gG+n
  MMETSP0890-20130614|26692_1  30 GNFGMACAERLAKEGALIALYDIRSAE---EVRtRLIN-AEKHVVeIVDVTNYKAVEDAVQRTVQVF-GRIDYCFNNAGYQGK---FTPSADYDPLDFAKVQQVNVNGIFHMLKAVAS--IMKIQsprgGVIVNTASMAAHSAPPNMPAYATSKAAVYHLTRAAAKDLAP-YDIRVNSISPAfigpgvlWTRQIELQALASSQYydpdpavVAKQMIESTPMRRYGSIDEVIGPVLFLFSDDASYLTGIDIQITGGIN 276
                  679*********************997...34413443.445555499******************9.**************8...7899**************************88..66654446699***************************************.*********75222222223444455555543366778889999*********************************9999999976 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   2.3e-11   3.2e-08       3     160 ..      23     180 ..      22     197 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 2.3e-11
                  EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE------.---TTT--HHHHHHHHHHHHHHHHHHHHHHCC......----EEEEEEEGGGT-------------HHHHHH- CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlr.dallaemtaedlaavlapKvtGawnLhellad......epldffvlfSSiagvlgsagqanyaaanaflDala 160
                   ++tG++g++G++ a++La++ga  ++l   +  ++ee + +l + e+   + +v  +Dv++ +ave ++++  + +++++ +++ Ag     ++ a+ ++ d+a+v +  v+G  ++ +++a+       +  ++v ++S+a+    +   +ya+++a +  l 
  MMETSP0890-20130614|26692_1  23 AIITGAAGNFGMACAERLAKEGAL-IALYDIR--SAEEVRTRLINAEK---H-VVEIVDVTNYKAVEDAVQRTVQVFGRIDYCFNNAGYQGkFTPSADYDPLDFAKVQQVNVNGIFHMLKAVASimkiqsPRGGVIVNTASMAAHSAPPNMPAYATSKAAVYHLT 180
                  58*****************99985.6666666..34444422222232...2.34457******************************986479************************99999988887666779999999999999999999999888766555 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.8   5.4e-10   7.4e-07       2     156 ..      24     185 ..      23     205 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 5.4e-10
                  EEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH...TBEEEB--TT-HHHHHHHHHHH.....T.SEEEE--S---.HHHCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS----SSH..HHHHHHHHHHHHHHHHH CS
   PF01370.16   2 lVtGatGfiGsalveallekgyevvnlirrtrseslatvri...rvelveldltdkdalerlfaee.....qpdaVihlAaesg.vdass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetplgplsp..YaaaKlageklveayae 156
                  ++tGa+G  G a +e+l+++g   ++l+  +++e+ +t+ i   +  ++ +d+t+ +a+e++++++     ++d+ ++ A++ g    s   dp df++   + +  ++++++   v  ++ + S      +++  +   + +       Ya +K+a+++l++a+a+
  MMETSP0890-20130614|26692_1  24 IITGAAGNFGMACAERLAKEGAL-IALYDIRSAEEVRTRLInaeKHVVEIVDVTNYKAVEDAVQRTvqvfgRIDYCFNNAGYQGkFTPSAdYDPLDFAKVQQVNVNGIFHMLK--AVASIMKIQSPRGGVIVNTASMAAHSAPPN--MpaYATSKAAVYHLTRAAAK 185
                  8*********************9.77777777776666666888888899***************9999***************97788879******999888888888888..444566666643333333333333333333..246*************9986 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.3e-06    0.0072       1      70 [.      24      91 ..      24     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.3e-06
   PF01073.14  1 lVtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdkekleealegvdvv 70
                 ++tG++G  G +  ++L +++  + + ++d+r  +e++ +l + + + v  +Dvt+ + +e a++    v
  MMETSP0890-20130614|26692_1 24 IITGAAGNFGMACAERLAKEG--ALIALYDIRSAEEVRTRLINAEKHVVEIVDVTNYKAVEDAVQRTVQV 91
                 69*******************..68999*********99999999998999************9965444 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.4e-05     0.019       1      62 [.      21      84 ..      21      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.4e-05
   PF03807.12  1 kigii..GaGnigealakglaaaga..qkheviiaasrspekaeelaeelgvkvtavsneeaaeea 62
                 k++ii   aGn+g a a++la++ga  + ++++ +a+    ++  +++++ v+++ v+n +a+e+a
  MMETSP0890-20130614|26692_1 21 KVAIItgAAGNFGMACAERLAKEGAliALYDIR-SAEEVRTRLINAEKHV-VEIVDVTNYKAVEDA 84
                 799**9668***************988888998.5477777777776666.799999***999975 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.8e-05     0.025       2     134 ..      24     183 ..      23     220 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-05
    PF13460.1   2 aviGAtGktGrrivkellarg.hevtalvRnpsklpe......ssgvtivkkDlfdledlaeala.......gvdvvvdafgarpe..........d............regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelleas 134
                  +++GA G+ G +++++l+++g + +   +R++++++       ++ v+   +D+++ +++++a++        +d+ + ++g   +          d              ++k++++++k +  r  v+v +a+    +++       p++++y+ +kaa   l +a+
  MMETSP0890-20130614|26692_1  24 IITGAAGNFGMACAERLAKEGaLIALYDIRSAEEVRTrlinaeKHVVE--IVDVTNYKAVEDAVQrtvqvfgRIDYCFNNAGYQGKftpsadydplDfakvqqvnvngiFHMLKAVASIMKIQSPRGGVIVNTASMAAHSAP-------PNMPAYATSKAAVYHLTRAA 183
                  59*******************844444567776666666633233333..35888887777777733333324777777776555566677665551555666775555556666666666666676777777775555444.......78889999999888887643 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.4e-05      0.13       4      29 ..      29      54 ..      25      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.4e-05
    PF13450.1  4 aGlsGlvaAylLakagkdvlvlekrd 29
                 aG +G+++A +Lak+g  + +++ r+
  MMETSP0890-20130614|26692_1 29 AGNFGMACAERLAKEGALIALYDIRS 54
                 6999*******************886 PP

>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   9.4e-05      0.13      44     129 ..      14      91 ..       2     161 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.4e-05
                  HHHHHHCHHHC---EEEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..HHH CS
   PF00291.20  44 aanallralakggkgvveassGNhGaavAlaaallglkativvpsgappekialiralGaevilvvssvegdyddaaelaekalel 129
                  a+  ++     g+  +++  +GN G+a+A   a+ g  + ++  ++a +++ +li a    v++ v +v+ +y+++ ++++++++ 
  MMETSP0890-20130614|26692_1  14 AFGRFH-----GKVAIITGAAGNFGMACAERLAKEGALIALYDIRSAEEVRTRLINAEKH-VVEIV-DVT-NYKAVEDAVQRTVQV 91 
                  333333.....44569**********************9999999999999999999999.55444.344.677777777765333 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00016      0.21       4      68 ..      24      85 ..      21      93 .. 0.83
   2 ?   -0.7   0.1      0.35   4.8e+02      41      90 ..     135     184 ..     118     190 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00016
                 EEE--------HHHHHH----EEEEE--TTT--TT-HHHHHHHHHHH--SE..EEE------HHHHH CS
   PF04321.12  4 lvtGanGqlGteLaralkeegvevvaldreeldltdpeavaalvkeakpdv..vvnaAAytavdkaE 68
                 ++tGa G  G++ a++l++eg +++al     d+  +e+v++ + +a+ +v  +v++  y+av++a 
  MMETSP0890-20130614|26692_1 24 IITGAAGNFGMACAERLAKEG-ALIAL----YDIRSAEEVRTRLINAEKHVveIVDVTNYKAVEDAV 85
                 79****************999.88888....8********988877777662358999999988775 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.35
                  HHHHHHHHHH--S..EEEE------HHHHHH-HHHHHHHHT---HHHHHHHH CS
   PF04321.12  41 eavaalvkeakpd..vvvnaAAytavdkaEseeeeayavnaegpenlAeaaa 90 
                  +ava+++k ++p+  v+vn+A   a  +    +  aya  ++++ +l +aaa
  MMETSP0890-20130614|26692_1 135 KAVASIMKIQSPRggVIVNTASMAAHSAPP--NMPAYATSKAAVYHLTRAAA 184
                  667777777777666888887665544332..23345555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 816.54
//
Query:       MMETSP0890-20130614|26704_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-06   25.7   9.0      6e-06   25.7   6.3    2.4  2  PF07885.11 Ion channel


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   6.3   4.4e-10     6e-06       2      77 ..      61     134 ..      60     136 .. 0.84
   2 !    5.1   2.3    0.0012        17      17      74 ..     175     228 ..     151     233 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.4e-10
   PF07885.11   2 llllvllfgaviysl.eeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvl 77 
                  l++l++  g+ +y +     e+++ + al++s+ + + +GYGd+  ++ ++++f+++y++lG +l++  ++++++ l
  MMETSP0890-20130614|26704_1  61 LIILYFGCGTCFYRFcD---EDFTTVYALFYSVNVGLGVGYGDLHIRDVFTKWFTVFYMMLGSSLVISSMSIFFNSL 134
                  46667777777777733...4559999********************999*****************9999998765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0012
   PF07885.11  17 eeswegwsfldalYfsfvtltTiGYGdivPgtdagrlfa.ivyillGlalfalllavlg 74 
                  +++    ++ dal f++  +tT G   i+P++++  lf  ++ +l+G++  +l    ++
  MMETSP0890-20130614|26704_1 175 QKFG---NLADALVFAVSNYTTAGL--ISPKDAFSSLFLtTLTLLIGIPANILWWGQVA 228
                  3345...99*************987..89998887776669*******98776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.73
# Mc/sec: 1073.44
//
Query:       MMETSP0890-20130614|26716_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.19    9.9  41.9       0.26    9.4  29.0    1.2  1  PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
       0.96    9.1  17.2        1.3    8.7  11.9    1.2  1  PF01034.15 Syndecan domain
        7.7    5.5  25.0        9.7    5.1  17.3    1.1  1  PF04502.8  Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> PF05793.7  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  29.0   5.8e-05      0.26     275     377 ..      10     118 ..       3     136 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.8e-05
                  XXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
    PF05793.7 275 ddGddegrEedyisDdsasendpe.......eredklseEeeekkeieqdedeeeke.eekkeeegklskkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvk 377
                  dd  +e+ E+ +++ ++++e+++        ++    ++   ++k  + ded++++e +e +e++++++kk kk+  + +kk++kd++  +++++s+++D  +  + + +k
  MMETSP0890-20130614|26716_1  10 DDTVEEEEEMSFVEEEEEEEEEEVqvekkrlKKST-SKQRVTAPKRRKDDEDDDDDEeDEGEEDDDEEEKKVKKKGAPASKKARKDDDTFEEDDESESEDEGD-RAEARIK 118
                  56668999999*99998888666567665543333.4445555666566655555550555555566667777777888999999777776666666666554.4444444 PP

>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  11.9   0.00029       1.3     166     264 ..      10     113 ..       2     138 .. 0.48

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00029
   PF01034.15 166 tdedeeddeedpeddnkpetteketeelsttlpevvesgevelattneadnevpasdgssddtedde......ntnensqkgdtkdidlrdntnesgssaaqlas 264
                   d+ ee++e  ++++ ++e++e+e++ + ++l++++ ++ v+++  +++d + ++ +++ ++++dde      ++ +   k ++kd d  +  +es+s+++ +++
  MMETSP0890-20130614|26716_1  10 DDTVEEEEEMSFVEE-EEEEEEEEVQVEKKRLKKSTSKQRVTAPKRRKDDEDDDDDEEDEGEEDDDEeekkvkKKGAPASKKARKDDDTFEEDDESESEDEGDRA 113
                  333333333333333.33333334444666666666666665555555555444444444444444422222211122222233444444555555555555444 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  17.3    0.0021       9.7     164     280 ..      10     128 ..       3     140 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0021
    PF04502.8 164 kadvavesmLealrreekkeeeeeeeedeelikslslgleseedrrlakdedkedek...ekkketseksakssssakatdiekksaakkseeessskakknsesklkskkalkslvvkk 280
                  +++v+ e+ ++  ++ee++eeee + e ++l ks+s++  ++ +rr  +++d++de+   e+ ++++ek+ k++  + +++  k+ ++ ++++es+s+ +     +   k++l+     k
  MMETSP0890-20130614|26716_1  10 DDTVEEEEEMSFVEEEEEEEEEEVQVEKKRLKKSTSKQRVTAPKRRKDDEDDDDDEEdegEEDDDEEEKKVKKKGAPASKKARKDDDTFEEDDESESEDEGDR-AEARIKNRLALGGELK 128
                  4566666667777778888888888888888888877755554444433322222224433344444444444444444444333333333333333333333.4444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1713  (0.125293); expected 273.4 (0.02)
Passed bias filter:                      674  (0.0492978); expected 273.4 (0.02)
Passed Vit filter:                       200  (0.0146284); expected 13.7 (0.001)
Passed Fwd filter:                       104  (0.00760679); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.69u 0.43s 00:00:02.12 Elapsed: 00:00:01.23
# Mc/sec: 284.45
//
Query:       MMETSP0890-20130614|26727_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-20   71.2   0.0    1.6e-19   69.8   0.0    1.7  1  PF02263.14 Guanylate-binding protein, N-terminal domain
    2.2e-15   56.5  16.5      6e-15   55.0   0.9    2.2  2  PF02841.9  Guanylate-binding protein, C-terminal domain
  ------ inclusion threshold ------
        1.8    6.6  16.3      0.012   13.8   5.2    1.7  2  PF01499.11 Herpesvirus UL25 family
        8.3    4.5  11.0        3.7    5.7   1.9    2.2  2  PF03961.8  Protein of unknown function (DUF342)


Domain annotation for each model (and alignments):
>> PF02263.14  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   4.7e-23   1.6e-19     143     257 ..       6     121 ..       2     124 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 4.7e-23
                  HHHHHSS-SEEEEEEEEEEE--TTT.S--------HHHHHHHCT----SSSSCT...HHHHHHHHEEEEEEEEEE----TTTT-SS---.BGGGS-HHHHHHHHHHHHHHHSTT-- CS
   PF02263.14 143 adseefvkfFpdlvflvRDfslele.aegealtedeyLekrLklkkgqdeklqksnelRkcirkfFpkrkcFvldrPglkvalnakleelkedeldeeFkkqlkelvsyllseskv 257
                  +++e  ++  p + ++vRDfslele ++g +lt+deyLe++L+ ++ +++   ++n+lR+ +r+fFp+r+c  l rP+++ + ++++++l+ +   +eF+ ql+el + ll es++
  MMETSP0890-20130614|26727_1   6 EEAEALSRHMPWFTWIVRDFSLELEsIDGSTLTADEYLEQALRPQRVTEPGSAERNRLRHALRHFFPNRSCRCLVRPVKNESELQQVDTLPASRRRSEFNDQLSELATHLLGESLA 121
                  55667788899*************95699*****************************************************99**************************998875 PP

>> PF02841.9  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.9   1.8e-18     6e-15       2     139 ..     128     266 ..     127     278 .. 0.88
   2 !    6.4   5.4    0.0011       3.8     158     258 ..     313     446 ..     305     468 .. 0.46

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.8e-18
    PF02841.9   2 gitvtGkrLasLvqtYvdaInsGavPclenavlalaqiEnsaAvqkAiahYeeqmeqkv..klptetlqelldlhrdcekeAievFmkrsfkdenqkFqkeLkeslekkkedflkkneeasekkCsallqklseeleeki 139
                  g  + G+  a L  +   a nsGavP l +a+  +++ E+ aA q+  +  ++++++    + p e   el +  +++ + A + F +r++++ +q+ + +L+ +++++ ++  + n   se++C++l +kl +el e+ 
  MMETSP0890-20130614|26727_1 128 GAPLKGPGYAALLRQMCAAFNSGAVPVLTDAWRHVSKTECAAALQSSKQILSSKLNKMNkaNTPLE-ELELEKKLEKVANDARSTFEQRALGEMRQESRGQLERDIKNALNKTRRANRLVSERYCQQLADKLHAELVENC 266
                  567889999*******************************************99998751244545.23556666777788999*************************************************9998875 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0011
    PF02841.9 158 dkleeeYeqeprKGvkaeevLqeflks.........................................keaveeailqtdkaltakekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeerek 258
                  ++l++ Y++   KG  a+evL   l+                                          ++a ++ + + ++al++++ e ++ +       a  ++ ++   + +++  ++ ++l++++  L+ +le+  +k
  MMETSP0890-20130614|26727_1 313 RELKARYSR-DAKGPAAHEVLLALLEMqwpnschelakcldvrlerqqsthhknrldlktklaefegkRQASAAVMEEKQRALVDAQMERAELK-------ARLQAANNALTKARAQHTEHSNKLQDNISDLELQLERINAK 446
                  567777755.468888888888887775555555555555555555555555555555443222222122222222233333333333333333.......33333333333333333333344444444444333333222 PP

>> PF01499.11  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.0      0.46   1.6e+03      77      77 ..     233     233 ..     163     291 .. 0.54
   2 ?   13.8   5.2   3.5e-06     0.012      13     101 ..     361     458 ..     353     484 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.46
   PF01499.11  77 r 77 
                  +
  MMETSP0890-20130614|26727_1 233 K 233
                  2 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.5e-06
   PF01499.11  13 pherNflriaeesleetrerfalrlrkea.......eevkleklkkr..alkaeLdnleaksqtrseeiearLreieaeleevadaldlletaaaaae 101
                  +h +N l  + +  e   +r a+ + +e+        ++++++lk+r  a++ +L +++a++ ++s++++++++++e +le+ ++  ++l++++a+  
  MMETSP0890-20130614|26727_1 361 THHKNRLDLKTKLAEFEGKRQASAAVMEEkqralvdAQMERAELKARlqAANNALTKARAQHTEHSNKLQDNISDLELQLERINAKASALQDENARLR 458
                  56666666666555444333333333322235665666777777777889***********************************9999998877655 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.9    0.0044        15     328     385 ..     186     248 ..     149     274 .. 0.65
   2 ?    5.7   1.9    0.0011       3.7     352     409 ..     389     444 ..     329     482 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0044
    PF03961.8 328 depelkeklkeleeeleel.eeeleklkkk.lkklpklkaegqlesekkeqleklletk....e 385
                  ++ ++  +  ele++le++ ++   + +++ l ++++ + +gqle ++k+ l+k++++     e
  MMETSP0890-20130614|26727_1 186 NKANTPLEELELEKKLEKVaNDARSTFEQRaLGEMRQ-ESRGQLERDIKNALNKTRRANrlvsE 248
                  3333333334666666666444444444447888888.77888888888888888887733332 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0011
    PF03961.8 352 klkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeeleskk 409
                  + +++l   ++  ++ +l+++ ++  + l++++ +++e  ++l++++ +l+ +le+ +
  MMETSP0890-20130614|26727_1 389 EKQRALVDAQM--ERAELKARLQAANNALTKARAQHTEHSNKLQDNISDLELQLERIN 444
                  22222222222..234444444444444444444444444444444444444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1371  (0.100278); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.04u 0.39s 00:00:01.43 Elapsed: 00:00:00.93
# Mc/sec: 1285.79
//
Query:       MMETSP0890-20130614|26740_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 1084.25
//
Query:       MMETSP0890-20130614|26738_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.4   0.0    1.7e-22   79.8   0.0    1.3  1  PF07534.11 TLD
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.22   11.3   0.0    1.5  1  PF13711.1  Domain of unknown function (DUF4160)


Domain annotation for each model (and alignments):
>> PF07534.11  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   2.4e-26   1.7e-22       1     139 []     202     357 ..     202     357 .. 0.90

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 2.4e-26
   PF07534.11   1 llyssskhgsslntflekie.ekgptlllikdekkyifGaflsqpwkssnkkfygdsesflfslspkfkvyks.....tgknnaylntssdg...lgfGggqp...kfsLwidsdlekgtsrhs...etfgngslse...dseerfkiedlEVWglg 139
                  +ly ss +g s++++ ++i  ++g t+ll++++ +++fGa+l++pw++ +  ++g s++f+fsl+p++k+ ++        +++ylnt+ ++   +++Gg++      +L+i ++l ++t+       tf++g l +   + +  + i  +EVWg+g
  MMETSP0890-20130614|26738_1 202 RLYGSSIDGLSFHRLCHQILgWQGTTILLLRSTTNEVFGALLDEPWREWHT-YFGGSSCFIFSLRPNLKICRPrrdlgARRDFMYLNTKAHKfkgIALGGSGTdpkTSRLVIPEQLGDATVMLRrsdLTFESGDLVPpssAPDGIVSIHAIEVWGVG 357
                  58999*************************99999***********98888.*********************6665555558999998844666****99889999************998666789********9999888999*********96 PP

>> PF13711.1  Domain of unknown function (DUF4160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.2e-05      0.22      26      66 .]     106     144 ..      98     144 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.2e-05
    PF13711.1  26 geakfwietlevleGslpkkelklilewieehqeelleeWe 66 
                   +a ++i +++v++ +  k el+ i +w+  h +el ++W+
  MMETSP0890-20130614|26738_1 106 RNAQISIAPGSVIQDD--KIELSFIARWADRHVTELADAWS 144
                  7899**********98..99********************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1568.52
//
Query:       MMETSP0890-20130614|26764_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-21   76.6   0.3    2.3e-21   76.1   0.2    1.1  1  PF01613.13 Flavin reductase like domain
  ------ inclusion threshold ------
       0.04   13.3   0.1      0.065   12.6   0.1    1.4  1  PF04289.7  Protein of unknown function (DUF447)


Domain annotation for each model (and alignments):
>> PF01613.13  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.2   3.3e-25   2.3e-21       4     138 ..      66     211 ..      63     225 .. 0.88

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 3.3e-25
                  -----EEEEE.E----EE---B---EEEETTT.TEEEE-EESS...SHHHHHHHH---EEEEE-BTT-HHHHHHTTS---.B---BB---BEEE-S-..---EEETTSSEEEEEEEEE.EE---......EEEEEEEEEE------- CS
   PF01613.13   4 vaqpvavvtt.vppgsplgatlssftslsldP.plvafslrlp...sstasalkeagsftinllsedqealadafaqgsgpreddksifagltwees.ptgaPallgavasleCqvvgsvevgd......helfigrVvavkvgeda 138
                  +++p+a+v++  ++g+ + a++s+   + +dP  +v  +++++    +t+++++++++f+++++se   ++a+++ ++ + +e +++  +glt+ +s ++++P++++a  ++eC+v+++++ +       ++l++g+V +++v+++ 
  MMETSP0890-20130614|26764_1  66 IPRPIALVSSvSKSGHVNLAPFSYSSIVNHDPgIIVFSCVDKSsggGDTLKNVEATKEFVVHIVSEWFLEAANHTCGNFA-PEINEFFQSGLTPVSSfKVQPPRVAEAALAMECEVIQTIPMKNskdlvsSTLVLGKVIQIHVNKNV 211
                  89********888****9**************5555555555544458*****************************999.9****8888****************************977765577888*************9974 PP

>> PF04289.7  Protein of unknown function (DUF447)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.5e-06     0.065      35     118 ..     112     209 ..      72     224 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.5e-06
                  -HHHHHHHH---EEEEE---HHH.HHHTT-----GG...GEEEETTEE........EE----EEEEEEEEEE...---EEEEEEEE...E---EEEET CS
    PF04289.7  35 srTleNleengelvvnvtdDpll.fakaalgdlees...dfeeelkplkkik....vlkdalawvefeveev...egdserlvlel...kpvkeeilr 118
                    Tl+N+e+++e+vv+++++  l  a+ ++g++ ++    f++ l+p++++k    ++++a   +e+ev ++   +++++++  +l   k+++ ++++
  MMETSP0890-20130614|26764_1 112 GDTLKNVEATKEFVVHIVSEWFLeAANHTCGNFAPEineFFQSGLTPVSSFKvqppRVAEAALAMECEVIQTipmKNSKDLVSSTLvlgKVIQIHVNK 209
                  57*****************8654256677777765433257777888887777788888888888888888778744444444444001444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 755.31
//
Query:       MMETSP0890-20130614|26761_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-18   64.1   0.0    2.9e-17   62.6   0.0    1.9  1  PF01926.18 50S ribosome-binding GTPase
    4.2e-06   25.9   0.1      7e-06   25.2   0.1    1.3  1  PF02421.13 Ferrous iron transport protein B
      5e-06   26.3   0.0    2.3e-05   24.1   0.0    2.2  1  PF00350.18 Dynamin family
    0.00022   20.5   0.3      0.012   14.9   0.0    2.3  2  PF00009.22 Elongation factor Tu GTP binding domain
    0.00024   21.4   0.1    0.00067   20.0   0.0    1.8  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.012   14.8   0.1      0.033   13.4   0.1    1.7  1  PF00071.17 Ras family
       0.03   13.4   0.2      0.078   12.1   0.0    1.7  2  PF12846.2  AAA-like domain
      0.084   12.7   0.4         22    4.8   0.0    3.0  3  PF13521.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.7e-20   2.9e-17       2      89 ..      24     113 ..      23     171 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.7e-20
                  EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE...EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE.TTS CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek...iilvDtPGiiegasedkeiegikkylekveradvlllvvd.asa 89 
                  ++++Gr N+GKStL+n++t+++ ++v ++pgtT d+++  ++ ++   + + Dt+Gi e+ + ++ ++++ k++ +++++d+++lvvd  ++
  MMETSP0890-20130614|26761_1  24 IGVFGRMNAGKSTLMNRITRQETSIVDQTPGTTADTKIALMELHEigpCKIFDTAGIDEKGELGD-KKRL-KTFSNLKECDLAILVVDsFTN 113
                  89******************99**************77554444445568*******98877777.4444.59***************4433 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   4.1e-09     7e-06       2     116 ..      23     140 ..      22     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.1e-09
                  EEEEE--TT---HHHHHHH----TB.--------S--BB--EEETT.EEEEEEE------SSSSSHHHHHHHHHHHHH--SEEEEEEEG..GGHHHHHHHHHHHHHTT-SEEEEEETHH CS
   PF02421.13   2 tvalvGnpnvGKttlfnaltgakqk.vgNwpGvTVekkegklklkg.keveivDLPGiYsLsayseeekvardylleekpdviinvvDa..snlernLyLtlqllelgvpvvvalnmiD 116
                  ++ + G  n+GK+tl+n++t ++++ v   pG+T + k + ++l++   ++i D  Gi    +   ++k  + +   ++ d+ i vvD+  +nl+ + +L  +  e g+  +++ n+  
  MMETSP0890-20130614|26761_1  23 NIGVFGRMNAGKSTLMNRITRQETSiVDQTPGTTADTKIALMELHEiGPCKIFDTAGIDEKGELG-DKKRLKTFSNLKECDLAILVVDSftNNLDWECILCKKAAEYGILPLLVYNVKS 140
                  68899***************9986626778*************999899*********8866665.56666777778999********8546899999999999999988888888654 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   2.3e-05       1      48 [.      24      76 ..      24     190 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.4e-08
                 EEEE--TT---HHHHHHH-----------------EEEEEEE-----.....- CS
   PF00350.18  1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlqlgeeeras.....e 48
                 i v+G ++aGKS+l+n +  ++   ++++p T + +++ l e +++      +
  MMETSP0890-20130614|26761_1 24 IGVFGRMNAGKSTLMNRITRQETSIVDQTPGTTADTKIALMELHEIGpckifD 76
                 79**********************************99995544433333332 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     7e-06     0.012       4      33 ..      22      51 ..      20      68 .. 0.81
   2 ?    3.5   0.0     0.023        39      90     135 ..      97     143 ..      92     235 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7e-06
                 EEEEEEESTT---HHHHHHHHHHCCCCEHH CS
   PF00009.22  4 rnigiighvDhGKtTltdallykagaiskr 33
                 +nig+ g +++GK+Tl+++++ +   i ++
  MMETSP0890-20130614|26761_1 22 LNIGVFGRMNAGKSTLMNRITRQETSIVDQ 51
                 7********************988776654 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.023
                  HHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE.-TTST CS
   PF00009.22  90 glrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviN.KiDrv 135
                   l+ +D+a+lvvd+          + + a ++g+ +++v N K   +
  MMETSP0890-20130614|26761_1  97 NLKECDLAILVVDSFTNNLDWECILCKKAAEYGILPLLVYNvKSNTA 143
                  5789*********9888766666777777777777666666243333 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.9e-07   0.00067       2      84 ..      24     111 ..      23     116 .. 0.72
   2 ?   -2.7   0.0       4.3   7.3e+03      49      87 ..     154     194 ..     135     215 .. 0.55

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.9e-07
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel.lelwdlggr.......eelkkehell..lkkadaillvydlt 84 
                  + v+G  ++GKs+l ++++++e +   +  ++ g+t   k+  ++  +    +++d++g        +  kk  + +  lk++d ++lv+d+ 
  MMETSP0890-20130614|26761_1  24 IGVFGRMNAGKSTLMNRITRQETS---IVDQTPGTTADTKIALMELHEIGpCKIFDTAGIdekgelgD--KKRLKTFsnLKECDLAILVVDSF 111
                  89******************9999...66666666666666666666554657777777644443321..334455568***********985 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.3
    PF08477.8  49 tellelwdlggreelkkehell..lkkadaillvydltdee 87 
                  +e+++   ++g e+ +++++     + ++  llv dl+d++
  MMETSP0890-20130614|26761_1 154 AEKVQNYLVQGLEDCAAKNKNYdpAEFRQLPLLVTDLDDQN 194
                  44444444444555544444444455555666666666665 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.9e-05     0.033       4     148 ..      26     174 ..      23     183 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-05
                  EE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEE.EEEEEEE---GGGHHHHHHHHHT-SEEE..EE--TT-HHHHHTHHHHHHHHHHHST.TTSSEEEE---TTGGGG-SS-HHHHHHHHHHTT..EEE---BTTTTTT CS
   PF00071.17   4 lvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkev.kleiwDTAGqeefkslrslyyrdaegil..lvyditsresfenvkkwveeikrvae.envpivLvGnKvDleekravsteegeelakelg..lkfletSAktnen 148
                  + G  + GK++l++r ++++  +  ++T g    tk   ++ +e+   +i+DTAG +e  +l ++   ++   l  +  +i   +sf+n  +w   + ++a   ++  +Lv n v  ++ ++v ++ g +  k ++  ++ le  A +n+n
  MMETSP0890-20130614|26761_1  26 VFGRMNAGKSTLMNRITRQET-SIVDQTPGTTADTKIALMELHEIgPCKIFDTAGIDEKGELGDKKRLKTFSNLkeCDLAILVVDSFTNNLDWECILCKKAAeYGILPLLVYN-VKSNTAQQVAEQVGAHAEKVQNylVQGLEDCAAKNKN 174
                  67999**********999885.45566777666666666665555268********999998877655555444223344566677777777777776666633333333333.2233335666666655444443335555555555555 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05     0.078       3      25 ..      23      45 ..      22      54 .. 0.90
   2 ?   -2.9   0.0       1.6   2.8e+03      97     129 ..     272     302 ..     233     319 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.5e-05
    PF12846.2  3 ntlilGppGsGKSvllkklvlql 25
                 n+ ++G + +GKS+l++++++q 
  MMETSP0890-20130614|26761_1 23 NIGVFGRMNAGKSTLMNRITRQE 45
                 6779***************9875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.6
    PF12846.2  97 etdselrnrpledeeeaalsralrelyeeegia 129
                     +   ++ +++ e+  +++al+++ ++++ +
  MMETSP0890-20130614|26761_1 272 A--ARGNDSSAKEKERLRFRKALDTTLAAADQD 302
                  2..444455555577777888888777777766 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.013        22       6      30 ..      28      52 ..      23      71 .. 0.80
   2 ?    4.5   0.0     0.016        28      39      86 ..     272     317 ..     250     362 .. 0.82
   3 ?   -1.2   0.0      0.93   1.6e+03      52      89 ..     430     469 ..     410     473 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.013
    PF13521.1  6 GgpstGKTtlleaLaargypvvpEv 30
                 G   +GK+tl+++++++++++v  +
  MMETSP0890-20130614|26761_1 28 GRMNAGKSTLMNRITRQETSIVDQT 52
                 55669*************9999554 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.016
    PF13521.1  39 lakgeealpweedllafaeavleaqleqeaaaaaskllfcDrglldtl 86 
                  +a+g++ + +e+++l+f++a l++ l++ a+++a+k++++D  +ld++
  MMETSP0890-20130614|26761_1 272 AARGNDSSAKEKERLRFRKA-LDTTLAA-ADQDAPKIMITDSQALDIV 317
                  45666655555888999886.7777754.45589***********987 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.93
    PF13521.1  52 llafaeavleaqleqe..aaaaaskllfcDrglldtlaYa 89 
                  ++++ + ++++q+ ++   +aa+ k+ ++ +gll ++aY+
  MMETSP0890-20130614|26761_1 430 IIHCGACMIDHQKVRAriSDAAEAKVPITNYGLLMAYAYH 469
                  4455555555555444123456677777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:01.05
# Mc/sec: 1109.17
//
Query:       MMETSP0890-20130614|26772_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       161  (0.0117759); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:01.04
# Mc/sec: 177.42
//
Query:       MMETSP0890-20130614|26775_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.83
# Mc/sec: 254.07
//
Query:       MMETSP0890-20130614|26770_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-72  241.7  27.2    8.2e-72  241.2  18.9    1.1  1  PF12037.3  Domain of unknown function (DUF3523)
    8.9e-23   80.8   0.0      2e-22   79.6   0.0    1.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.9e-05   24.7  11.0     0.0028   17.6   0.0    3.8  4  PF13401.1  AAA domain
    5.3e-05   23.8   0.0    5.3e-05   23.8   0.0    2.5  1  PF13207.1  AAA domain
    0.00033   19.6   3.8    0.00035   19.5   0.0    2.7  3  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00037   19.8   0.0     0.0012   18.1   0.0    1.9  1  PF13481.1  AAA domain
     0.0011   18.1   0.1      0.005   15.9   0.0    2.1  2  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0017   17.9   0.0     0.0063   16.1   0.0    2.1  1  PF13245.1  Part of AAA domain
      0.002   17.4   3.2      0.012   14.9   0.0    3.1  3  PF05707.7  Zonular occludens toxin (Zot)
     0.0031   17.2   4.5     0.0037   17.0   0.0    3.0  1  PF13671.1  AAA domain
     0.0035   16.9   5.6     0.0061   16.1   0.2    3.2  3  PF07728.9  AAA domain (dynein-related subfamily)
      0.005   16.3   0.0      0.014   14.8   0.0    1.8  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.009   16.2   0.2      0.009   16.2   0.1    3.7  2  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.052   13.6   0.1       0.13   12.3   0.0    1.7  1  PF00910.17 RNA helicase
      0.053   13.0   0.0       0.14   11.6   0.0    1.8  1  PF05729.7  NACHT domain
       0.09   12.9   1.8       0.17   12.1   0.0    2.4  2  PF13238.1  AAA domain
       0.23   11.1   5.3        1.7    8.2   3.7    2.2  1  PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
       0.68    9.3   0.0       0.68    9.3   0.0    2.7  1  PF13086.1  AAA domain
        1.5    8.7   6.8          5    7.0   3.4    2.3  2  PF07043.8  Protein of unknown function (DUF1328)
          9    5.3  15.4        2.1    7.3   0.1    3.3  3  PF12846.2  AAA-like domain


Domain annotation for each model (and alignments):
>> PF12037.3  Domain of unknown function (DUF3523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2  18.9   1.2e-74   8.2e-72       4     276 .]       7     267 ..       3     267 .. 0.96

  Alignments for each domain:
  == domain 1    score: 241.2 bits;  conditional E-value: 1.2e-74
    PF12037.3   4 pasegekdakeektkeeakkkkaskFDptaLERgAkalkelessphakkaleliklqEktrqaEleakikeyeaaqaqlklerarveaeerrktlseqtkqerqraqYkdkLarkryqkeleqqrrqneellkkQeesvlrqEeiRratEeeilekkreqieeeaeLerenekakieaeaearikeereneDinlkqlkekakeeretvlesikttfsligeglralltDkdkltatvggltalaaGiytakegtrvvaryierrlGkPsLir 276
                  p++++ ++ ++e +k+++ + + s+FDp +LER+Aka+ke++ sp+ak+a+e+i+++E  +q E ++  + yea++ q+++ r   + ee r+tl+ qt++++ +aqY d+L+r+ry+++l++qr+  e+ l++Qee+++rqEe++r+             ++eaeL++++e a+++aeaea+ k++ren+D++l+q++  +ke ret l+s+k  ++ +g+g+ ++l+D +++ a+vg  t laaG+y a+  ++v+a+y+e+rlGkP Lir
  MMETSP0890-20130614|26770_1   7 PGAAALNKLSKE-EKKDEGDYSGSGFDPRGLERAAKAAKEIDTSPYAKQAFEVIQQREISKQLEHATTQAAYEAQARQYEASRVAADGEEARRTLEAQTEHAKRQAQYADELERQRYAAQLQAQREVREQELRRQEEAYKRQEELKRKS-----------LKYEAELREKTELARAKAEAEAKGKADRENHDLRLEQMRVEMKERRETLLASLKVGLTAVGQGAASFLNDPKQMGAAVGLATGLAAGVYGARGVAGVAASYVEARLGKPTLIR 267
                  444444443333.688999999*****************************************************************************************************************************99...........9***************************************************************************************************************9 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0     3e-25     2e-22       1     131 [.     338     464 ..     338     465 .. 0.87

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 3e-25
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHHTTSCCEEE-- CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieie 131
                  ++l+GppGtGKTl+ak +a+ +g ++  + g ++   +  ++  +i++lf+ ak++++   lf+DE+da+ ++r  ++s  +e++ n++ ++l +  +++++++++ atn+p+++dpal  +R+d +++++
  MMETSP0890-20130614|26770_1 338 LMLHGPPGTGKTLFAKKLASYSGLDYAIMTGGDVA-PLGRDAVTQIHKLFDWAKASRRGLLLFVDEADAFLRKR--ASSAMSEDLRNAFNAFLYRTGDQTHNFMLVFATNQPSDFDPALN-DRVDDIVQFD 464
                  58*********************************.8899999**********999955***************..55555555555555555555555568******************.****999886 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       3.3   2.3e+03      55      98 ..      77     119 ..      51     135 .. 0.57
   2 ?   -1.1   2.0       2.4   1.7e+03      36      91 ..     136     204 ..     119     206 .. 0.71
   3 !   17.6   0.0     4e-06    0.0028       5      26 ..     336     357 ..     335     367 .. 0.91
   4 !   10.7   0.0   0.00056      0.38      79     122 ..     385     442 ..     365     447 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 3.3
    PF13401.1  55 lqkllsalglpakgrltteellealqealrrrrtrlliiDEaqr 98 
                  +++ +++++ +  + ++ ee +++l+ + ++++++    DE++r
  MMETSP0890-20130614|26770_1  77 YEAQARQYEASRVA-ADGEEARRTLEAQTEHAKRQAQYADELER 119
                  44444444444444.44444444445555444445556666555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.4
    PF13401.1  36 e..............karvvfveapastspkellqkllsalglpakgrltteell.ealqealrrrrtrll 91 
                  e              k++ +++ea    +    + k  ++ + +a++  ++++l+ e+++  +++rr+ ll
  MMETSP0890-20130614|26770_1 136 ElrrqeeaykrqeelKRKSLKYEAELREKTELARAKAEAEAKGKADR--ENHDLRlEQMRVEMKERRETLL 204
                  03333333444456999999999999996666688888888877777..9999999999999999988554 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 4e-06
    PF13401.1   5 gilvvtGesGvGKTtllrrlar 26 
                  ++l+++G++G+GKT+++++la+
  MMETSP0890-20130614|26770_1 336 RHLMLHGPPGTGKTLFAKKLAS 357
                  5899***************997 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00056
    PF13401.1  79 lqealrrrrt.rlliiDEaqrL.....seealeelrslldd........etgvklvlv 122
                  l + +++ r+  ll +DEa+ +     s  + e+lr  +++        ++++ lv++
  MMETSP0890-20130614|26770_1 385 LFDWAKASRRgLLLFVDEADAFlrkraSSAMSEDLRNAFNAflyrtgdqTHNFMLVFA 442
                  444445555568*********6587665999999999999888888877777777765 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.7e-08   5.3e-05       4     109 ..     340     476 ..     338     507 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 7.7e-08
                  -B--TT---HHHHHHHHHHSTEEE..EEGGGB-............-GGGS-B--.---B--SSGGGB-HHHHHHHH....................H..HHHHHHTTS-----.------EEEEE----TTGGTTT-S CS
    PF13207.1   4 itGppGsGKsTlakeLaerlglpv..lslddll............reeglkeld.dgereskdadadllaaildglaa................kkdtlswvidgaleseldl.rleeadeiiyldaplpecrkrllk 109
                  ++GppG+GK+ +ak+La + gl++     +d +            +  ++++   +g + + d+ + +l++ +   +                 ++++  +v+  +  s++d   ++++d i+ +d+p+   r++ll+
  MMETSP0890-20130614|26770_1 340 LHGPPGTGKTLFAKKLASYSGLDYaiMTGGD-VaplgrdavtqihKLFDWAKASrRGLLLFVDEADAFLRKRASSAMSedlrnafnaflyrtgdQTHNFMLVFATNQPSDFDPaLNDRVDDIVQFDLPDASQREKLLR 476
                  79****************9777765244444.3355666667776667777555466665555555555544222222333334444455444444433344444444777776666777888888888556666666 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.7         9   6.2e+03      19      50 ..     119     150 ..     103     169 .. 0.57
   2 ?    0.1   0.0      0.44     3e+02     137     167 ..     250     280 ..     248     298 .. 0.91
   3 !   19.5   0.0   5.1e-07   0.00035      35      83 ..     320     368 ..     285     424 .. 0.71

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 9
    PF05496.7  19 rPksleeyigqekvkeklkifieaakkreeal 50 
                  r +  ++  +q++v+e+     e a kr+e l
  MMETSP0890-20130614|26770_1 119 RQRYAAQLQAQREVREQELRRQEEAYKRQEEL 150
                  44445555566666555444444445555444 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.44
    PF05496.7 137 GpsarsvkldlpkftlvgattraglltsPlr 167
                  G +a  v+ +l k tl+  t r + l++P+ 
  MMETSP0890-20130614|26770_1 250 GVAASYVEARLGKPTLIRETSRLSPLAAPFS 280
                  889999999******************9985 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 5.1e-07
    PF05496.7  35 klkifieaakkreealdhvllyGpPGlGkttlakiiakelgvelkvtsg 83 
                   ++++ + +k+ + +  h++l+GpPG Gkt +ak +a+  g +  + +g
  MMETSP0890-20130614|26770_1 320 AIAVATANTKANGAPFRHLMLHGPPGTGKTLFAKKLASYSGLDYAIMTG 368
                  3344555556778899*******************99988887765444 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-06    0.0012      36     139 ..     338     462 ..     333     468 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.8e-06
    PF13481.1  36 tllaGapgtGKStlalqlaaava..................tGepflg.......pvvpepgrVlylsaEdseaelrrrlsail.aalddpenlllvslagv.gslrltaddrrdalltadlerllaaiee 139
                  ++l G+pgtGK+ +a  la                            +       +++  ++r l+l  +++ a lr+r+s ++ ++l++  n +l+ + ++ ++++l+  +++   ++++l++ ++ i +
  MMETSP0890-20130614|26770_1 338 LMLHGPPGTGKTLFAKKLASYSGldyaimtggdvaplgrdaV-----TqihklfdWAKA-SRRGLLLFVDEADAFLRKRASSAMsEDLRNAFNAFLYRTGDQtHNFMLVFATNQPSDFDPALNDRVDDIVQ 462
                  6899*************9974447777997777777444440.....366666635444.44444444566666999999876559999999999999999999999999988888888888777776666 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.3e-06     0.005      21      43 ..     334     356 ..     315     359 .. 0.81
   2 ?   -1.8   0.0       1.9   1.3e+03     109     157 ..     397     444 ..     390     447 .. 0.54

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.3e-06
   PF01078.16  21 GgHnlllvGppGsGKtmlakrlp 43 
                     +l+l GppG+GKt+ ak+l+
  MMETSP0890-20130614|26770_1 334 PFRHLMLHGPPGTGKTLFAKKLA 356
                  4579****************997 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.9
   PF01078.16 109 vLfLDElpefkrk.vleaLRePledg.evtisrakakveyparfqlvaamN 157
                  +Lf+DE+  f rk +  a+ e l +  +  + r+  ++    +f+lv a+N
  MMETSP0890-20130614|26770_1 397 LLFVDEADAFLRKrASSAMSEDLRNAfNAFLYRTGDQT---HNFMLVFATN 444
                  47899998886541455566666544133333433332...2566666666 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.3e-06    0.0063      13      33 ..     338     358 ..     322     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.3e-06
    PF13245.1  13 lvvtGgPGtGKTttlaaiiaa 33 
                  l++ G+PGtGKT  + +++++
  MMETSP0890-20130614|26770_1 338 LMLHGPPGTGKTLFAKKLASY 358
                  566*********888877765 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4       2.2   1.5e+03     132     183 ..      95     144 ..      93     146 .. 0.69
   2 ?    1.7   0.0      0.19   1.3e+02       5      17 ..     340     352 ..     338     372 .. 0.84
   3 !   14.9   0.0   1.8e-05     0.012      62     143 ..     376     463 ..     353     496 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.2
    PF05707.7 132 eiRalvelavhlkrkdalgikdrytlkrilesshdltekvtveklklpkevf 183
                  e+R++ e + ++ ++ + + +d+ + +r + +  +++++v  ++l+ ++e++
  MMETSP0890-20130614|26770_1  95 EARRTLEAQTEHAKR-QAQYADELERQRYAAQ-LQAQREVREQELRRQEEAY 144
                  688888888888777.4688888888885543.4555557777777776665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.19
    PF05707.7   5 vtGkpGsGKtlea 17 
                   +G pG+GKtl a
  MMETSP0890-20130614|26770_1 340 LHGPPGTGKTLFA 352
                  79********987 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 1.8e-05
    PF05707.7  62 pegeelekyldkwrtld.kgallviDEcqqifpvragegkkv....pevleafseh...RhlgwdivlltqdiskidkeiRalvelavhl 143
                  ++   + ++l++w++   +g ll++DE+  + ++ra   + +    ++ ++af+       ++  +v+ t ++s  d ++ + v+  v++
  MMETSP0890-20130614|26770_1 376 RDAVTQIHKLFDWAKASrRGLLLFVDEADAFLRKRASS-A-MsedlRNAFNAFLYRtgdQTHNFMLVFATNQPSDFDPALNDRVDDIVQF 463
                  667788999******8889*****************96.3.4124445555554322224578888999999999988888888777776 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.3e-06    0.0037       2      25 ..     338     363 ..     338     474 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.3e-06
    PF13671.1   2 vllvGlpGsGKstlaerllkklg..y 25 
                  ++l+G+pG+GK+ +a++l+   g  y
  MMETSP0890-20130614|26770_1 338 LMLHGPPGTGKTLFAKKLASYSGldY 363
                  589***************97776653 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       5.3   3.6e+03      55      55 ..      98      98 ..      56     148 .. 0.54
   2 ?   -2.1   0.3       3.8   2.6e+03      29      59 ..     125     155 ..      96     172 .. 0.61
   3 !   16.1   0.2   8.9e-06    0.0061       1      33 [.     337     369 ..     337     457 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5.3
                 . CS
    PF07728.9 55 v 55
                 +
  MMETSP0890-20130614|26770_1 98 R 98
                 1 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.8
                  EEE--TT--HHHH---B--.........--- CS
    PF07728.9  29 yvqltrdtteedlkgrreiangttslvdspl 59 
                    q +r  +e++l  + e  +++++l+ ++l
  MMETSP0890-20130614|26770_1 125 QLQAQREVREQELRRQEEAYKRQEELKRKSL 155
                  3344455555555555554455555555555 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 8.9e-06
                  EEEEE------HHHHHHHGGGGBS--EEEEE-- CS
    PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqlt 33 
                  +++L GppGtgK+ +a++la+  +  + ++ + 
  MMETSP0890-20130614|26770_1 337 HLMLHGPPGTGKTLFAKKLASYSGLDYAIMTGG 369
                  79******************9888888777765 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05     0.014       1     114 [.     337     448 ..     337     455 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-05
    PF07726.6   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevyeekekefefkkGpvfanllladeinra.ppktqsalleameerqvtvegethklpepfl.vlatqnpie 114
                  h++l+g PG++ktl++k+la+  +l++  i    d+ P   lG + +++ +k f+  k      ll++de +     ++ sa+ e +++   ++  +t +  ++f+ v+at+ p +
  MMETSP0890-20130614|26770_1 337 HLMLHGPPGTGKTLFAKKLASYSGLDYA-IMTGGDVAP---LGRDAVTQIHKLFDWAKASRRGLLLFVDEADAFlRKRASSAMSEDLRNAFNAFLYRTGDQTHNFMlVFATNQPSD 448
                  99************************97.677889999...799999999999999999999999999998875145567788888888777666666655555542678887766 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.3   4.3e+03      66     103 ..     270     307 ..     252     325 .. 0.59
   2 !   16.2   0.1   1.3e-05     0.009       7      52 ..     316     364 ..     311     441 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 6.3
    PF13191.1  66 lpysaiiqalrellrqlltelaaelggwreallaalga 103
                  +++s+++  + +l r l++ + +++++  +  ++a++ 
  MMETSP0890-20130614|26770_1 270 SRLSPLAAPFSSLKRTLISSSNTAASESIRTGEKAIEG 307
                  45566666666666666666666666655555555555 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.3e-05
    PF13191.1   7 releaLlaalrr.vsegsp..lllvtGpsGiGKSsLlrelakpillerl 52 
                  + l+a++ a ++  ++g p   l ++Gp+G+GK+  +++la    l+ +
  MMETSP0890-20130614|26770_1 316 ERLKAIAVATANtKANGAPfrHLMLHGPPGTGKTLFAKKLASYSGLDYA 364
                  446677766666577788899999**************97665554444 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00019      0.13       2      20 ..     339     357 ..     338     368 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
   PF00910.17   2 wlyGpsgeGKStlakeLak 20 
                  +l+Gp+g+GK+++ak+La+
  MMETSP0890-20130614|26770_1 339 MLHGPPGTGKTLFAKKLAS 357
                  79**************986 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.14       2      22 ..     337     357 ..     336     360 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00021
    PF05729.7   2 tvilqGeaGsGKTtLlqklas 22 
                   ++l+G++G GKT +++klas
  MMETSP0890-20130614|26770_1 337 HLMLHGPPGTGKTLFAKKLAS 357
                  5799***************86 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7       5.7   3.9e+03     109     115 ..     137     143 ..      87     186 .. 0.65
   2 ?   12.1   0.0   0.00024      0.17       2      21 ..     339     358 ..     338     394 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.7
    PF13238.1 109 lekRgrk 115
                  l+++++ 
  MMETSP0890-20130614|26770_1 137 LRRQEEA 143
                  3332222 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00024
    PF13238.1   2 litGtpGvGKtTlakeLaer 21 
                  ++ G+pG+GKt  ak+La+ 
  MMETSP0890-20130614|26770_1 339 MLHGPPGTGKTLFAKKLASY 358
                  589**************864 PP

>> PF11712.3  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.7    0.0026       1.7      22     121 ..     148     242 ..      43     256 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0026
    PF11712.3  22 peflallerLraaqeedeYkrlirdvdksqknskp..........spaakkdeeddefgvelkevkrqlslvlNilvsvvgtffavyywalssfglsepaRvllglvaal 121
                  +e++++  +L+ ++e +e  +l            +          ++++++d   +++ ve+ke +++l + l + ++ vg ++a + + +   ++  ++++ +gl a++
  MMETSP0890-20130614|26770_1 148 EELKRK--SLKYEAELREKTELA-----------RakaeaeakgkADRENHDLRLEQMRVEMKERRETLLASLKVGLTAVGQGAASF-LND-PKQMGAAVGLATGLAAGV 242
                  222222..344444555555555...........044445555558999999999********************************.333.334555555555555554 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0     0.001      0.68      19      40 ..     337     358 ..     315     515 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.001
    PF13086.1  19 itliqGpPgtGKtttivelisq 40 
                    +++GpPgtGKt    +l s+
  MMETSP0890-20130614|26770_1 337 HLMLHGPPGTGKTLFAKKLASY 358
                  5789*********766666555 PP

>> PF07043.8  Protein of unknown function (DUF1328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.4    0.0073         5       7      24 ..     237     254 ..     232     255 .. 0.89
   2 ?    0.6   0.0      0.72   4.9e+02       2      17 ..     522     537 ..     521     548 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0073
    PF07043.8   7 AlvAgvlGFgGiAgaaag 24 
                   l Agv+G +G+Ag+aa+
  MMETSP0890-20130614|26770_1 237 GLAAGVYGARGVAGVAAS 254
                  589*************96 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.72
    PF07043.8   2 iFlviAlvAgvlGFgG 17 
                  + lviA  A+ +G  G
  MMETSP0890-20130614|26770_1 522 TKLVIAWQAAAFGTQG 537
                  569**********887 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   4.3       2.4   1.7e+03     129     164 ..      90     154 ..      25     214 .. 0.56
   2 ?    5.3   0.1     0.013       8.9       3      22 ..     337     356 ..     335     372 .. 0.85
   3 ?    7.3   0.1    0.0031       2.1     246     321 ..     396     476 ..     374     481 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.4
    PF12846.2 129 a........................tlaqrqayPt.lgdllealreeeeelaeealarde.....r 164
                  a                        ++++rq+y   l   ++ +re+e +++eea++r+e      
  MMETSP0890-20130614|26770_1  90 AadgeearrtleaqtehakrqaqyaDELERQRYAAqLQ-AQREVREQELRRQEEAYKRQEelkrkS 154
                  02333333333333333344444445666666665343.455566666566666665555433331 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.013
    PF12846.2   3 ntlilGppGsGKSvllkklv 22 
                  + ++ GppG GK+ ++kkl+
  MMETSP0890-20130614|26770_1 337 HLMLHGPPGTGKTLFAKKLA 356
                  88999*************95 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0031
    PF12846.2 246 kllviDEahrllgspeg.a.......dfldelareg.RkfgvgiilatQslsdlppsekakgilnnsttkiilrqdd.eelarlae 321
                   ll++DEa  +l+  +  a       +f   l+r+g   ++  +++at ++sd++p      + ++++ ++ ++++d +++++l++
  MMETSP0890-20130614|26770_1 396 LLLFVDEADAFLRKRASsAmsedlrnAFNAFLYRTGdQTHNFMLVFATNQPSDFDPA-----LNDRVDDIVQFDLPDaSQREKLLR 476
                  799*********66333234456666788889999988999***************9.....888888888888888666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1386  (0.101375); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.28u 0.43s 00:00:01.71 Elapsed: 00:00:01.09
# Mc/sec: 1250.94
//
Query:       MMETSP0890-20130614|26781_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-21   75.7   0.0    5.9e-21   75.3   0.0    1.1  1  PF13419.1  Haloacid dehalogenase-like hydrolase
    2.2e-06   27.1   0.0    4.9e-06   26.0   0.0    1.6  1  PF13242.1  HAD-hyrolase-like
     0.0003   21.2   0.0     0.0052   17.2   0.0    2.1  1  PF00702.21 haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   1.3e-24   5.9e-21       1     176 []      54     244 ..      54     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 1.3e-24
    PF13419.1   1 ivFDldgTLidfdfv.....ikralrklvaerlgld..ltaaelrelggkpfeevladllrelpkd........aeeilealkea.....nlesrlelfpdvvellrrlkakglklvilSngsaeavellleklgledlfd..avftsddvga.rKPdpeayekvlerlgvkpeeilfidDsledveaAraaGirtvhv 176
                  i+FDld+TL++ +++      ++++ + ++e+lg +  + a +lr+++ + ++ +l++l    + +        +    e+l ++     n+e+ l ++p+++  l++l    l+ ++++ng++++  + +++lgl + f+  ++++++ v    KPdpea+  +l+r ++  +++++++Ds++++++A+++ +rt+++
  MMETSP0890-20130614|26781_1  54 IIFDLDDTLYPQSSGfsdhrNREVAINFMCEKLGFEsrQAAIDLRNEYFRKYHSTLKGLTVAGQ-EgklpkpfrE----EDLGDYftencNFEKFLKPNPHLAQQLKQLP---LRKILFTNGPRRYGIRCIQALGLSEIFPedHIVGVENVMPyCKPDPEAFTAILARAQLFSHRAIMVEDSMKNIRTAHSLKMRTILI 244
                  8*********999986666644555669999999996566667999999999999999864322.2345433322....34444466679*******************9...************************999777999999866637*****************************************986 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.1e-09   4.9e-06       2      55 ..     199     251 ..     198     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.1e-09
                  ----STHHHHHHH----GGTTTEEEE---.HHHHHHHHH---EE---------- CS
    PF13242.1   2 lgKPnpgmydkalevlgappsevvmiGDslatDieaAnaaGirsilVltGvsre 55 
                  + KP+p+++ ++l+++++ + +++m++Ds    i+ A+ + +r+il+   ++++
  MMETSP0890-20130614|26781_1 199 YCKPDPEAFTAILARAQLFSHRAIMVEDS-MKNIRTAHSLKMRTILIDESLYTN 251
                  56**************988999*******.99***************9999887 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0052     126     198 ..     148     232 ..      51     237 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC......SEEEEHHH.....TTSHHHHHHHHHHHTS-GGGEEEEESSCTTHH CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx......xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00702.21 126 aeavasLkaagi.vvlltgdnpetaeaiakqagi......dslvfaev.....kPepklfvaaieeLqidpgevamvGDgvnDap 198
                   ++ ++Lk+  +   l+t++ +    +  + +g+      d++v  e      kP+p+ f a++ + q+  ++++mv+D+   + 
  MMETSP0890-20130614|26781_1 148 PHLAQQLKQLPLrKILFTNGPRRYGIRCIQALGLseifpeDHIVGVENvmpycKPDPEAFTAILARAQLFSHRAIMVEDSMKNIR 232
                  35556666666678999****************99777776666666699999***************9999********97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.56
# Mc/sec: 1151.93
//
Query:       MMETSP0890-20130614|26789_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-07   28.7   0.9        1.2    8.9   0.0    4.7  4  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
       0.02   14.5   0.1      0.052   13.2   0.1    1.7  1  PF03920.10 Groucho/TLE N-terminal Q-rich domain
      0.054   13.6   0.5      0.054   13.6   0.3    3.9  3  PF13646.1  HEAT repeats
       0.26   11.3   1.5       0.65   10.1   0.1    2.5  2  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00036       1.2       9      36 ..      72      99 ..      61     103 .. 0.83
   2 ?    3.4   0.0     0.019        65      13      39 ..     159     187 ..     147     195 .. 0.85
   3 ?    3.5   0.0     0.018        63      12      22 ..     242     252 ..     231     265 .. 0.83
   4 !    7.5   0.0   0.00095       3.2       4      22 ..     282     300 ..     281     313 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00036
                 HHCHHHHHHHHHHC-SSHHHHHHHHHHH CS
   PF00514.18  9 ieaGavppLvqLLksgdeevqeeAawAL 36
                 +  G+v++ v+LL+++d+ +q  A  +L
  MMETSP0890-20130614|26789_1 72 RSTGGVDAVVDLLSDEDPVTQASASYTL 99
                 478*****************98877666 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.019
                  HHHHHHHHHC..-SSHHHHHHHHHHHHHH CS
   PF00514.18  13 avppLvqLLk..sgdeevqeeAawALsNL 39 
                  av++Lv+ L   ++ ++   +A+++L +L
  MMETSP0890-20130614|26789_1 159 AVRKLVAILLhaNEEPGAAMQAVATLAEL 187
                  79999999999999999999999999888 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.018
                  HHHHHHHHHHC CS
   PF00514.18  12 GavppLvqLLk 22 
                   ++p+L++LL+
  MMETSP0890-20130614|26789_1 242 SVIPALIDLLR 252
                  59********7 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.00095
                  HHHHHHHCHHHHHHHHHHC CS
   PF00514.18   4 nkqavieaGavppLvqLLk 22 
                  n +++++aG+v+ L++L+ 
  MMETSP0890-20130614|26789_1 282 NQMQIRDAGGVRLLMALIA 300
                  77899************97 PP

>> PF03920.10  Groucho/TLE N-terminal Q-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.5e-05     0.052       9      53 ..     488     532 ..     481     536 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
   PF03920.10   9 aplqsgqplkftvsesldrikeefqflqaqyhslkleceklasek 53 
                  +  + +qp++ ++++  dr++ e +++q  y sl  ec+ l + k
  MMETSP0890-20130614|26789_1 488 TLANHSQPIEESLLQRYDRLQRELDYVQDLYDSLGRECDALEQHK 532
                  44557899*********************************9988 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   1.6e-05     0.054      22      59 ..      66     104 ..      34     131 .. 0.75
   2 ?    1.0   1.6      0.14   4.6e+02       5      59 ..     164     191 ..     144     285 .. 0.55
   3 ?   -4.0   0.0         4   1.4e+04      47      54 ..     457     464 ..     453     479 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.6e-05
    PF13646.1  22 eaLgqlgseealpaLlelLkdsdpevRraAaeaLgkl.g 59 
                   aL +++s   ++a+++lL+d+dp ++++A + L +l +
  MMETSP0890-20130614|26789_1  66 AALIRIRSTGGVDAVVDLLSDEDPVTQASASYTLRALvK 104
                  34557778888*********************9998743 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.14
    PF13646.1   5 laaLek.dpdpevraaaieaLgqlgseealpaLlelLkdsdpevRraAaeaLgkl...g 59 
                  +a+L++ +++p    +a+ +L+                               +l   +
  MMETSP0890-20130614|26789_1 164 VAILLHaNEEPGAAMQAVATLA-------------------------------ELvqgK 191
                  3333222333333333333333...............................222211 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 4
    PF13646.1  47 vRraAaea 54 
                  +Rr A+ea
  MMETSP0890-20130614|26789_1 457 MRRRAVEA 464
                  55555554 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00019      0.65       4      29 ..      79     104 ..      77     105 .. 0.92
   2 ?   -2.3   0.1       1.8   6.3e+03      19      29 ..     179     189 ..     176     190 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00019
                  HHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   4 lllkllnDpspeVReaAaeaLgalae 29 
                  +++ ll+D++p   ++A ++L al++
  MMETSP0890-20130614|26789_1  79 AVVDLLSDEDPVTQASASYTLRALVK 104
                  6889********************97 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.8
                  HHHHHHHHHHH CS
   PF02985.17  19 aAaeaLgalae 29 
                  +A+ +L++l++
  MMETSP0890-20130614|26789_1 179 QAVATLAELVQ 189
                  57777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       665  (0.0486396); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.67
# Mc/sec: 2070.88
//
Query:       MMETSP0890-20130614|26785_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-51  173.5   0.0    4.9e-51  172.8   0.0    1.3  1  PF02146.12 Sir2 family
  ------ inclusion threshold ------
      0.015   13.6   3.7      0.023   13.0   2.5    1.2  1  PF09052.5  Salmonella invasion protein A


Domain annotation for each model (and alignments):
>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.8   0.0   7.2e-55   4.9e-51       1     181 []      83     268 ..      83     268 .. 0.96

  Alignments for each domain:
  == domain 1    score: 172.8 bits;  conditional E-value: 7.2e-55
                  -----TT-------.-----TTTS-HHHHTCHHHHHC-HHHHHH...HHHHCCCCCCT..S---HHHHHHHHHHH---EEEEEE--SS-HHHH----..SEEE----TTEEEETTTS-EEEECCGGTCCCHH--....B-ST---BEEESS--B-----HHHHHHHH.HHHH-SEEEE----S-STT CS
   PF02146.12   1 GAGiStesGipdfRskkeGlyaklakeelaspealfsnkllkeepevfynlarellpkaeakpnaaHkflkklekkgkllrliTQNidnLekkaGsk..kvvelHGslakakcvkCeakesgeelkeeieaekve...ecekcgkllkpdvvfFGealpeklkklle.kveeadlllviGtSlkVap 181
                  GAG+St++GipdfRs+ +Gly++l+k++l+ p+a+f+ ++++e+p+ fy+larel p   ++p+++H f+k+l +kg+llr++TQNid Le +aG+   k+v +HG++ +a+c++  + +  +++k+ + +  +      ++ g+l+kpd+vfFGe lp+++++l + ++ +a lllviGtSl+V+p
  MMETSP0890-20130614|26785_1  83 GAGMSTSAGIPDFRSPGTGLYDNLQKYNLPRPQAIFELEYFRERPQAFYELARELWPG-GYAPTPTHCFIKLLYDKGRLLRCFTQNIDSLETAAGVPaeKIVAAHGNFDSATCITTGEPVPINQVKDAVLSGPQGwinLKNRYGGLVKPDIVFFGEGLPRRFFDLANdDLARARLLLVIGTSLSVQP 268
                  9*******************************************************98.9***********************************9888****************************999887766666688999**************999999988*****************98 PP

>> PF09052.5  Salmonella invasion protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.5   3.3e-06     0.023     324     378 ..     479     533 ..     458     543 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-06
    PF09052.5 324 syldnarRhldnSnhensekaadsstaaiddlsrngesllstnasnvagrhalvd 378
                  + ++narRh  + ++ n  +  +s  a+  d ++n+es lst ++n ++  ++++
  MMETSP0890-20130614|26785_1 479 AVVGNARRHSASDEFANRLRHSQSHGAFLTDRQKNNESFLSTATTNSSEPITRMN 533
                  679***************************************9999998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.71
# Mc/sec: 2008.21
//
Query:       MMETSP0890-20130614|26798_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   17.1   0.3       0.01   15.5   0.2    1.9  1  PF04945.8 YHS domain


Domain annotation for each model (and alignments):
>> PF04945.8  YHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   7.4e-07      0.01      24      45 ..     177     198 ..     175     199 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.4e-07
                  EE----HHHHHHHHTSHHHCTT CS
    PF04945.8  24 lYhFcSegckdkFeadPekYan 45 
                  +++F S++ +d F ++P+kYa 
  MMETSP0890-20130614|26798_1 177 TFYFTSAAHRDAFAENPQKYAP 198
                  89******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       328  (0.0239906); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1309.56
//
Query:       MMETSP0890-20130614|26827_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   13.9   0.0      0.028   13.9   0.0    1.1  1  PF05148.10 Hypothetical methyltransferase
      0.033   13.6   0.0       0.04   13.3   0.0    1.1  1  PF13847.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.2e-06     0.028      70     104 ..      35      69 ..       4      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.2e-06
   PF05148.10  70 kkdnlvvadlGcGeakiaeavrekekvrsfdlvav 104
                   ++n+ v +lGcG ++  ++v++  ++ s+d   v
  MMETSP0890-20130614|26827_1  35 LNENILVLNLGCGTCRWPMNVSKRVRILSVDNSHV 69 
                  568999***********************997665 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.8e-06      0.04       2      47 ..      36      77 ..      35      78 .] 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.8e-06
    PF13847.1  2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAker 47
                 +++i vl lGCGt +   + +    ++ ++  +D s   +e+A+e 
  MMETSP0890-20130614|26827_1 36 NENILVLNLGCGTCRWPMNVS----KRVRILSVDNSHVGVEKAREA 77
                 68899********99888888....4789**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 322.27
//
Query:       MMETSP0890-20130614|26833_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 888.06
//
Query:       MMETSP0890-20130614|26846_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-11   42.5   0.4    9.1e-06   25.2   0.0    2.0  2  PF00514.18 Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.046   13.8   0.1      0.064   13.4   0.1    1.3  1  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     1e-06    0.0069      17      41 .]       2      26 ..       1      26 [. 0.96
   2 !   25.2   0.0   1.3e-09   9.1e-06       1      33 [.      28      60 ..      28      61 .] 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1e-06
                 HHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18 17 LvqLLksgdeevqeeAawALsNLaa 41
                 Lv+LL+sg  + +e Aa+AL+ La+
  MMETSP0890-20130614|26846_1  2 LVNLLTSGTAGAKEIAAGALWSLAD 26
                 9**********************95 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 1.3e-09
                 CHHHHHHHHHCHHHHHHHHHHC-SSHHHHHHHH CS
   PF00514.18  1 spenkqavieaGavppLvqLLksgdeevqeeAa 33
                 +++nk  + +aGa+ppLv+LL+sg  + +e Aa
  MMETSP0890-20130614|26846_1 28 NDKNKVVISRAGAIPPLVSLLTSGTANAKEKAA 60
                 789999999*************99888887776 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.4e-06     0.064       4      52 ..       2      60 ..       1      61 [] 0.62

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.4e-06
    PF13646.1  4 LlaaLekdpdpevraaaieaLgqlgse...........ealpaLlelLkdsdpevRraAa 52
                 L+++L ++  +  ++ a+ aL  l++             a+p+L++lL++  ++ +++Aa
  MMETSP0890-20130614|26846_1  2 LVNLL-TSGTAGAKEIAAGALWSLADNndknkvvisraGAIPPLVSLLTSGTANAKEKAA 60
                 56666.4444444444444444333332235566665588********999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 208.83
//
Query:       MMETSP0890-20130614|26847_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-81  273.7  14.8      2e-81  273.3  10.2    1.1  1  PF10498.4  Intra-flagellar transport protein 57
  ------ inclusion threshold ------
      0.016   14.9   2.8      0.043   13.5   1.9    1.8  1  PF06103.6  Bacterial protein of unknown function (DUF948)
      0.044   13.4   6.9      0.078   12.6   3.0    2.3  2  PF07889.7  Protein of unknown function (DUF1664)
       0.45    9.6   5.4       0.95    8.5   3.8    1.6  1  PF05549.6  Allexivirus 40kDa protein
        3.5    8.2  11.1       0.19   12.3   0.6    3.3  4  PF07303.8  Occludin homology domain
        6.8    6.1   8.6         16    4.9   5.9    1.7  1  PF04156.9  IncA protein
        8.5    6.2  13.0       0.48   10.2   2.6    2.5  2  PF06818.10 Fez1


Domain annotation for each model (and alignments):
>> PF10498.4  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.3  10.2     1e-84     2e-81       1     359 []      21     395 ..      21     395 .. 0.92

  Alignments for each domain:
  == domain 1    score: 273.3 bits;  conditional E-value: 1e-84
    PF10498.4   1 medLleKLklLnYekeflkkkklkplsryYFalestNpgeqFyyFtsLaaWLlk.kag.kkveqpqefddpnatasnilqelkklglkvdfppakLksGsGeqvcyvLddLadaaLkkkkfkfkrpkyekeedeeeev.eeddaeiile.eveeeqeaeekeqde......lldlnvlkkktkk.........gdtsekeqakqvleskvdaeewklevervapqLkveiktdakdWrkhleqmkqlkkaieksleelkqsLkklsqdlskalekiekrEkqlnnqleelvqeykeareelsevqekynqlsksvsektaelseiseeleqvkqeleergsklsdgsplvkikqaitkLkeeikqldlrigvlqhtll 359
                  me ++eKL +L+Y ++fl++   kp+ r  Fal + N + qF +F +L+aWL++ ++g +++ ++ +fddpn+ ++++l +l+kl+   +f ++k+k+++Ge+v++vLd L+++ ++ kk+ ++rp+y +e++ee e+ +e d  +i + e+e e e+e+  ++e      + dl  +k++tk+          +++e  q++q+l+s++d+  w+ everv p+L+++++  ak+Wr+h++q+k ++ ai++ +++++++L+ l+q l+ a eki  +E+++n+q++e+ + y+  ++el +++ ++++ +++ +++t+ l +i+++le++k ++ +rg++++d+splv+ik+a+++Lk +i   dl+igv++h+ll
  MMETSP0890-20130614|26847_1  21 MEGVYEKLCILDYQESFLRES--KPFHRWQFALPPENTSVQFSLFLELCAWLMTeTTGdETFFRVDKFDDPNTAVNKLLLALRKLEFGLEFSASKIKQAHGEAVVTVLDFLVTKTIA-KKIHWQRPEYIQETEEEAEIdKEADIGAIEDtEIEAEIEDEAIFKEEsfshfnTADLVSGKANTKTdggidiykkEEKEEAYQQRQILKSQIDPIVWQTEVERVGPRLRYSASITAKEWRSHIDQTKEYEIAIHDLIPSTQKQLEILKQRLIDAKEKIMLKENYINKQFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITDQLEEMKGDMTNRGNSVTDTSPLVQIKHALKQLKLDIVSFDLQIGVVNHSLL 395
                  9*****************975..8*****************************976667*******************************************************987.5799********9988888755555444433134444444444555577779999999999999888887776656677778999****************************************************************************************************************************************************************************985 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.9   2.2e-05     0.043      24      86 ..     300     362 ..     269     365 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-05
    PF06103.6  24 lkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetldpvfqavadlgesvsd 86 
                  ++k +de +k+ ++l++++d+i + ++  +++ n+l++D+ + + +l+++   + + g+sv d
  MMETSP0890-20130614|26847_1 300 INKQFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITDQLEEMKGDMTNRGNSVTD 362
                  588999******************************************999999999999976 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.0     4e-05     0.078      43     123 ..     270     350 ..     264     352 .. 0.93
   2 ?    7.3   0.2    0.0017       3.4      43      98 ..     330     387 ..     326     402 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4e-05
    PF07889.7  43 dAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesle 123
                  d + s  kqle +++ + +ak ++  + + ++++ de+k+  ++ k e+ +i+++l++  e++++l++ + ++  +le+++
  MMETSP0890-20130614|26847_1 270 DLIPSTQKQLEILKQRLIDAKEKIMLKENYINKQFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITDQLEEMK 350
                  5566789************************************************************99999999999885 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0017
    PF07889.7  43 dAvasvtkqlekvseavasakkhLsqridnlddk..ldeqkeiskeikeevteiredl 98 
                  + ++++t++l+++ +++++ k ++++r +++ d+  l + k+  k+ k ++ +   ++
  MMETSP0890-20130614|26847_1 330 ENCNNLTNDLGQITDQLEEMKGDMTNRGNSVTDTspLVQIKHALKQLKLDIVSFDLQI 387
                  679************************9998764346677777777777776665555 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8   0.00048      0.95      52     174 ..     253     372 ..     248     398 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00048
    PF05549.6  52 eWLthishdvdsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkassaeaaasedLpiyqakhP 174
                  eW  hi++  +  i   + +   s++++L  l+++l   ++++  lk++  +++ +++++s + l ++l++ietsl++  ++ ++l++   + +++ +  + + +++ +++++  p+ q kh 
  MMETSP0890-20130614|26847_1 253 EWRSHIDQTKEYEIAIHDLI--PSTQKQLEILKQRLIDAKEKIM-LKENYINKQFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITDQLEEMKGDMTNRGNSVTDTSPLVQIKHA 372
                  99999998877766665555..5577778888777666665554.33333344445555666677899*********************9999999988888888887777777888888886 PP

>> PF07303.8  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.0      0.54   1.1e+03      17      96 ..     213     293 ..     205     298 .. 0.64
   2 ?   12.3   0.6   9.8e-05      0.19      14      57 ..     301     344 ..     294     385 .. 0.68
   3 ?    3.2   0.0     0.068   1.3e+02      24      91 ..     332     401 ..     325     405 .. 0.80
   4 ?   -2.0   0.1       2.9   5.6e+03      71      88 ..     407     424 ..     367     435 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.54
    PF07303.8  17 FdsdykeYkeLqaeldei..skklaeldaelkslkegseeykeva.kileeyeklkkrspdykekkerckyLknKLshiKklv 96 
                   ++ y++ + L++++d i  +++++++  +l+ +   + ++ + +   ++eye     +  + + +++ + Lk++L   K+++
  MMETSP0890-20130614|26847_1 213 KEEAYQQRQILKSQIDPIvwQTEVERVGPRLRYSASITAKEWRSHiDQTKEYEIA--IHDLIPSTQKQLEILKQRLIDAKEKI 293
                  4556777777777777763345677777777666663333333333567788765..34567778888889999998888877 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.8e-05
    PF07303.8  14 kaeFdsdykeYkeLqaeldeiskklaeldaelkslkegseeyke 57 
                  +++Fd++ k Y++L++eld+i+++l++  ++ ++l+++  + ++
  MMETSP0890-20130614|26847_1 301 NKQFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITD 344
                  579***********************999999999886555433 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.068
    PF07303.8  24 YkeLqaeldeiskklaeldaelkslkegseeykevakileeyeklk..krspdykekkerckyLknKLsh 91 
                    +L++ l++i+++l+e++ ++++  ++ ++ + + +i +  ++lk    s d +        L++KL+h
  MMETSP0890-20130614|26847_1 332 CNNLTNDLGQITDQLEEMKGDMTNRGNSVTDTSPLVQIKHALKQLKldIVSFDLQIGVVNHSLLQQKLRH 401
                  56899999***********999999998888888888999999998655566666667777778888877 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 2.9
    PF07303.8  71 rspdykekkerckyLknK 88 
                   +p +k+  ++  +L++K
  MMETSP0890-20130614|26847_1 407 DTPGFKMRAKKSSSLHSK 424
                  456666666666666666 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.9     0.008        16      76     156 ..     260     349 ..     208     378 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.008
    PF04156.9  76 e............srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdl 156
                  +            ++ q  l  ++++l ++ e++   e+++++   ++++ ++ ++ l++el   e++l++ +e++ +l+ ++ ++ + +++ 
  MMETSP0890-20130614|26847_1 260 QtkeyeiaihdliPSTQKQLEILKQRLIDAKEKIMLKENYINK---QFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITDQLEEM 349
                  1444443444444444555555555555566555444444443...33333444444445667777777777777777777777777333333 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.1       0.2   3.8e+02     141     178 ..     206     245 ..     136     252 .. 0.63
   2 ?   10.2   2.6   0.00025      0.48      29     118 ..     277     368 ..     272     442 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.2
   PF06818.10 141 erlraeLkeerrrreeqassFeeeRrvWqeekekv...irY 178
                  +  + e ++e   +++q  + + +  vWq e e+v   +rY
  MMETSP0890-20130614|26847_1 206 DIYKKE-EKEEAYQQRQILKSQIDPIVWQTEVERVgprLRY 245
                  444444.3455567788888888899999999998555566 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00025
   PF06818.10  29 kaseilsLraqlrearaelqese....eklqelkdalrtktleLevceneLqrkkseaellrekagrleaelaelrealasagtlkedclllse 118
                  k  ei  L+ +l +a+ ++  +e    +++ e k++++t + eL+  e  Lq   ++ + l + +g++ ++l e++  +++ g+  +d+  l +
  MMETSP0890-20130614|26847_1 277 KQLEI--LKQRLIDAKEKIMLKEnyinKQFDEKKKSYQTLKTELDTIETSLQTSTENCNNLTNDLGQITDQLEEMKGDMTNRGNSVTDTSPLVQ 368
                  44444..67788888887766652222688999********************************************99999877777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1124  (0.0822118); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.76
# Mc/sec: 1425.20
//
Query:       MMETSP0890-20130614|26858_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.024   14.3   0.0    1.3  1  PF13209.1 Protein of unknown function (DUF4017)


Domain annotation for each model (and alignments):
>> PF13209.1  Protein of unknown function (DUF4017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.8e-06     0.024      18      35 ..      26      43 ..      21      57 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-06
    PF13209.1 18 aiiiPasegyntvgWklf 35
                 a++    +gyn vgWk+f
  MMETSP0890-20130614|26858_1 26 AMVNRHRKGYNDVGWKIF 43
                 56666779*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.59
# Mc/sec: 280.25
//
Query:       MMETSP0890-20130614|26864_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.065   12.6   0.0       0.13   11.6   0.0    1.5  1  PF04332.10 Protein of unknown function (DUF475)
        9.1    4.0   8.7         17    3.1   6.0    1.3  1  PF09586.5  Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> PF04332.10  Protein of unknown function (DUF475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05      0.13     143     208 ..       2      70 ..       1      76 [. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
   PF04332.10 143 vllagllglltyllvdglerlfekdgakaa...avraagkaglalflylevldasfsfdGviGafaitk 208
                  v +a ll + t +lv+g+ + ++k  + +    + +  ++   + f+ l++  asf +dG   afa+ +
  MMETSP0890-20130614|26864_1   2 VKVAMLLLFETNFLVEGFIQSLSKRRDVTFvraQEEPPDEGNTTNFISLDITPASFELDGARKAFALYN 70 
                  56788888889999999999999977555433345556788899**********************976 PP

>> PF09586.5  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   6.0    0.0025        17     641     783 ..      99     247 ..      68     253 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0025
    PF09586.5 641 tkiklknvqekneklt.vk..kknkpatltltvt..pkkngdlYlelpsklnksdknvsitvngktvkrssnq.kkqtqlinlgyrkkgqtikltlqlskgqlslkdlklyslnqkalkkavkklkeqqlkvtkvtdnklkgtvttkkk 783
                  ++ik++++ ek +  +  k  kk+ +   t+t    ++ ++ l  +++ ++n+ +++vs   n  t +++s+  +  +  + + + + +  i++t++ + + ++ k+ ++++++q ++kkav+++++ +++++ + ++k+++t +++++
  MMETSP0890-20130614|26864_1  99 ERIKAQKAIEKAKLEAiEKvtKKSFDFGATVTGVaiNTVESVLSTSVKATSNLAKNAVSSAKNAVTSTTKSTMnTIGNIATGVVDTAVDGIIDFTIKKPLQAIQKKSEEIVTAPQRNFKKAVDQVNAIPVRTVENIQKKISVTNNITQE 247
                  33333333333333322223333333333333222244444445555555566656665555555555544444455566666666666699999999999**************************9999998888888888887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2535  (0.185415); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.39s 00:00:01.52 Elapsed: 00:00:00.94
# Mc/sec: 1348.59
//
Query:       MMETSP0890-20130614|26870_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 212.63
//
Query:       MMETSP0890-20130614|26898_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 640.28
//
Query:       MMETSP0890-20130614|26915_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-05   22.9  40.4     0.0039   16.5   6.3    4.4  3  PF02412.13 Thrombospondin type 3 repeat
  ------ inclusion threshold ------
      0.014   15.1   0.9          2    8.2   0.0    2.6  2  PF06328.6  Ig-like C2-type domain
      0.029   14.3   7.1       0.75    9.7   0.0    4.1  4  PF14195.1  Domain of unknown function (DUF4316)


Domain annotation for each model (and alignments):
>> PF02412.13  Thrombospondin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   1.0    0.0017       7.7      15      28 ..     134     147 ..     133     151 .. 0.90
   2 !   16.5   6.3   8.6e-07    0.0039       1      33 [.     158     191 ..     158     193 .. 0.86
   3 !    9.0  10.1   0.00018      0.84       2      31 ..     201     231 ..     199     234 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0017
   PF02412.13  15 DfDnDgvqddlDNC 28 
                  D D+Dg+ d  D C
  MMETSP0890-20130614|26915_1 134 DEDGDGIADADDFC 147
                  89**********99 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 8.6e-07
   PF02412.13   1 tDaDsDgvGDaC.dkDfDnDgvqddlDNCprnan 33 
                  tD D+Dg  D   d+D D+Dg+ d  D Cp +a 
  MMETSP0890-20130614|26915_1 158 TDWDADGCEDSVeDNDKDGDGISDEFDKCPKSAR 191
                  5778888777779******************996 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00018
   PF02412.13   2 DaDsDgvGDaC.....dkDfDnDgvqddlDNCprn 31 
                  D D+Dg    C     d+D D+Dg+++  D C+r+
  MMETSP0890-20130614|26915_1 201 DLDQDG----CedsveDNDDDGDGIDNIHDSCART 231
                  444555....555559****************987 PP

>> PF06328.6  Ig-like C2-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00044         2      23      46 ..     240     264 ..     231     269 .. 0.85
   2 ?    4.7   0.1    0.0054        25      13      39 ..     306     333 ..     300     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00044
                  -EEE--CCCCC.T--TTT-EEESSS CS
    PF06328.6  23 asCilkqkclh.svsakkIlwklnl 46 
                  + C+ +q  ++ s+++kkI w++ l
  MMETSP0890-20130614|26915_1 240 FGCSFSQRQQQhSKRQKKIAWRVSL 264
                  67****999888**********965 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0054
                  ----TTS-B--EEE--CCCCC.T--TTT CS
    PF06328.6  13 pvvslgsnvtasCilkqkclh.svsakk 39 
                   +++  ++ +  C+lkq+  + s ++++
  MMETSP0890-20130614|26915_1 306 GIIQEKEPSSHACSLKQEHHQhSTNNEQ 333
                  58888999999*****998886777776 PP

>> PF14195.1  Domain of unknown function (DUF4316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.34   1.6e+03      37      47 ..      51      61 ..      21      86 .. 0.47
   2 ?    3.8   0.0     0.012        53       8      22 ..     165     179 ..     164     193 .. 0.88
   3 ?    9.7   0.0   0.00016      0.75       8      65 ..     207     257 ..     206     262 .. 0.76
   4 ?    1.3   0.1     0.072   3.3e+02      24      45 ..     330     349 ..     311     362 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.34
    PF14195.1 37 kpeekpSildk 47
                 ++ee + ++d 
  MMETSP0890-20130614|26915_1 51 QKEEGQRLKDT 61
                 23333333333 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.012
    PF14195.1   8 aEltvEqNyNmiDGi 22 
                   E++vE+N+   DGi
  MMETSP0890-20130614|26915_1 165 CEDSVEDNDKDGDGI 179
                  59*********9*99 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00016
    PF14195.1   8 aEltvEqNyNmiDGiiNNtpetptvddlekpeekpSildkLkedkkkakqkksskekk 65 
                   E++vE+N+   DGi N     +      +  ek Si d       +++q+ s+++kk
  MMETSP0890-20130614|26915_1 207 CEDSVEDNDDDGDGIDNI---HDSC----ARTEKGSITDAFGCSFSQRQQQHSKRQKK 257
                  59************9887...3322....56789999998888888888887666655 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.072
    PF14195.1  24 NNtpetptvddlekpeekpSil 45 
                  NN  e+pt++  ++p  +pS+l
  MMETSP0890-20130614|26915_1 330 NN--EQPTSKSKKSPPSQPSVL 349
                  88..889888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1080  (0.0789936); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.45s 00:00:01.23 Elapsed: 00:00:00.70
# Mc/sec: 1273.49
//
Query:       MMETSP0890-20130614|26917_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-14   53.9  11.0    2.2e-14   53.7   7.6    1.1  1  PF04979.9 Protein phosphatase inhibitor 2 (IPP-2)
  ------ inclusion threshold ------
       0.62    9.7   4.3       0.81    9.4   3.0    1.4  1  PF08615.6 Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
        5.5    7.4   8.6        2.4    8.6   0.1    2.2  2  PF04233.9 Phage Mu protein F like protein
        7.9    5.5   6.5         12    5.0   4.5    1.2  1  PF04888.7 Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> PF04979.9  Protein phosphatase inhibitor 2 (IPP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   7.6   6.3e-18   2.2e-14       4     117 ..      17     126 ..      11     136 .. 0.63

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 6.3e-18
    PF04979.9   4 qkwDemnilatyhpadkdYglmkidePktpYhrliededslseseseesldaeeLaekl..aaaessepsvsaeeeesee..eeeeelsleekekkreFeekRKlHYnEflniklark 117
                  ++wDe+ i  + h++d++ ++mk+deP+tpY++  e ed ++e+    +  +++La++    a++ ++ +  ++e+e e   e  e+  ++++ek r F  kR+ HYnEf+ +k  r+
  MMETSP0890-20130614|26917_1  17 ITWDEEVI--ASHDKDRG-TRMKVDEPETPYMYP-EPEDMIDEE---VKAPPQTLANNWdeIAEKLKQAAQAQKEKEPEArlEWVEK-MEQHEEKARAFADKRRQHYNEFERLKQWRE 126
                  79******..99*9***8.9************66.555555443...3344555555554222222222222222222222244555.466779999****************95444 PP

>> PF08615.6  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.0   0.00024      0.81      79     122 ..      92     135 ..       2     137 .] 0.66

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00024
                  -BSSS---S-SGGG-----B----EE-SEEEE---BS--.---S CS
    PF08615.6  79 eqeeeddedgegeetartksleptaefqsftlWghDgapeggde 122
                  e  e++++ +e+   + +k  + ++ef+ +  W+ D++ + +de
  MMETSP0890-20130614|26917_1  92 EWVEKMEQHEEKARAFADKRRQHYNEFERLKQWREDKQAQVDDE 135
                  22334444444555556666*******************99997 PP

>> PF04233.9  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00069       2.4      70     102 ..      16      48 ..       5      64 .. 0.85
   2 ?    1.5   2.8      0.11   3.8e+02      19      65 ..      70     119 ..      66     135 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00069
    PF04233.9  70 vavkdsrtrpeHaaldGkvfkvddpfwqtgapp 102
                  + + d+ + ++H +  G+ +kvd+p+  +++p+
  MMETSP0890-20130614|26917_1  16 KITWDEEVIASHDKDRGTRMKVDEPETPYMYPE 48 
                  5677999*******************9999985 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
    PF04233.9  19 elakelkkr....gqlssrsrlrtiartetlraynaarlaq.eaaskevkke 65 
                  e+a++lk+      +  + +rl+++ + e++   + ar+   ++++ ++++e
  MMETSP0890-20130614|26917_1  70 EIAEKLKQAaqaqKEKEPEARLEWVEKMEQHE--EKARAFAdKRRQHYNEFE 119
                  56666666644443335777999998888887..444443333334444333 PP

>> PF04888.7  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   4.5    0.0035        12      11      53 ..      62     105 ..      61     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0035
    PF04888.7  11 kaaekqaesklaqleiasekqe.kkveeyqeqiekaiekaekak 53 
                  ++++++++  +++l++a ++q+ k+ e   e +ek+++++eka+
  MMETSP0890-20130614|26917_1  62 QTLANNWDEIAEKLKQAAQAQKeKEPEARLEWVEKMEQHEEKAR 105
                  578899999999999999999989999999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1539  (0.112566); expected 273.4 (0.02)
Passed bias filter:                      699  (0.0511264); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.42s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 449.73
//
Query:       MMETSP0890-20130614|26926_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.43    9.8  12.0       0.64    9.3   8.3    1.1  1  PF10500.4 Nuclear RNA-splicing-associated protein
       0.73    9.6  10.9        1.2    8.9   7.6    1.2  1  PF09747.4 Coiled-coil domain containing protein (DUF2052)
        1.4    9.3   6.3          3    8.2   4.4    1.5  1  PF04233.9 Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.3   0.00014      0.64      34     138 ..      50     156 ..      14     168 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00014
    PF10500.4  34 ksrkksksskesrkkrekkkkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkke....aeerrvkeaapepsldlwqkeag 138
                  k+++  k++++ +kk +   + r     s  s  s+s ++s ++  ++e +  + +  ++ +e+kk+  e+k+l+++++ ++    ae++ v+e+ ++++ +l + ++ 
  MMETSP0890-20130614|26926_1  50 KEKLVRKTANNKEKKPSPDDTMRELE--SLVSGLSASEAASAARAAEKEMQIERERVLRNYEEAKKNAAEAKRLQQEAQYAQekakAEHAVVVEERAQAKAKLEEAAEI 156
                  22333333333333333333333323..333333334444444444444444444444444578888888888887776544444588899999999999888777665 PP

>> PF09747.4  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.6   0.00026       1.2      14     130 ..      34     144 ..      28     163 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00026
    PF09747.4  14 geyfSeeemrerePlLYeelvgqflteeereargraerkse.slsavLlsslereeakleleeeq.eeeeseeeeeeeeeeeeeeeeeekqrgeseeeeeedqetaekekevlepeeke 130
                   ey S++e +  +P L e+lv++  +++e++ +   ++++  sl + L +s   + a+   +e+q e+e+  ++ ee +     ++++e++r ++e + ++++++ae++  v+   e++
  MMETSP0890-20130614|26926_1  34 IEYDSDNERQALAPSLKEKLVRKTANNKEKKPSPDDTMRELeSLVSGLSASEAASAARAAEKEMQiERERVLRNYEEAK-----KNAAEAKRLQQEAQYAQEKAKAEHAVVVE---ERA 144
                  5899***********************9999987776443235555555554444444444444433333333222222.....22222222222222222222111111111...111 PP

>> PF04233.9  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.4   0.00065         3      19      80 ..      88     147 ..      71     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00065
    PF04233.9  19 elakelkkrgqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvavkdsrtrpe 80 
                    a++ +k +q+ +r+r  + + + ++ a +a rl+qea++ ++k +  ++  v ++r+ ++
  MMETSP0890-20130614|26926_1  88 SAARAAEKEMQI-ERERVLRNYEEAKKNAAEAKRLQQEAQYAQEKAK-AEHAVVVEERAQAK 147
                  345667777999.9**************9999999988877777666.69*******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1315  (0.096182); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:00.94
# Mc/sec: 1603.52
//
Query:       MMETSP0890-20130614|26945_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0063   16.5   0.0     0.0074   16.3   0.0    1.3  1  PF06480.10 FtsH Extracellular


Domain annotation for each model (and alignments):
>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0074      26      55 ..      50      79 ..      25     132 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.4e-07
   PF06480.10 26 spkeisyseFledleagnvskvvvdestis 55
                    +i++ +Fl  +++g+v++v++d+ ++s
  MMETSP0890-20130614|26945_1 50 EEDSIPWIQFLGLVDKGQVARVEFDDINMS 79
                 5678*********************88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      143  (0.0104593); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.31s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 557.77
//
Query:       MMETSP0890-20130614|26952_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-19   68.0   0.0    2.7e-18   66.4   0.0    2.1  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    2.3e-08   34.2   0.0    9.6e-06   25.6   0.0    3.1  3  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
    4.1e-08   33.3   0.1     0.0062   16.7   0.0    2.8  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    1.7e-05   23.7   6.7      0.026   13.3   0.0    3.9  4  PF01134.17 Glucose inhibited division protein A
    4.6e-05   22.3   0.1    0.00015   20.7   0.0    1.7  2  PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
    9.2e-05   21.3   0.0       0.12   11.1   0.0    2.5  2  PF05834.7  Lycopene cyclase protein
    0.00041   19.4   0.1       0.03   13.2   0.0    2.3  2  PF01946.12 Thi4 family
    0.00059   18.6   0.2      0.055   12.2   0.0    2.8  3  PF00890.19 FAD binding domain
     0.0013   17.6   3.4       0.57    8.8   0.1    2.8  3  PF01266.19 FAD dependent oxidoreductase
      0.003   16.1   0.2       0.29    9.5   0.0    2.3  2  PF04820.9  Tryptophan halogenase
     0.0044   16.8   1.1        4.2    7.2   0.0    3.3  3  PF02254.13 TrkA-N domain
  ------ inclusion threshold ------
       0.02   14.5   0.1        6.1    6.4   0.0    3.3  4  PF13454.1  FAD-NAD(P)-binding
       0.02   13.2   0.0          2    6.6   0.0    2.5  2  PF03486.9  HI0933-like protein
      0.028   14.5   0.1        2.9    8.0   0.0    2.7  2  PF13241.1  Putative NAD(P)-binding
      0.037   13.9   0.5        8.7    6.3   0.0    2.7  2  PF13450.1  NAD(P)-binding Rossmann-like domain
      0.095   11.6   1.6       0.74    8.6   0.0    2.5  3  PF01494.14 FAD binding domain
       0.15   11.3   1.6        4.6    6.4   0.1    2.7  2  PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
       0.88    9.0   3.9        5.4    6.4   0.1    2.8  3  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   3.5e-21   2.7e-18       2     197 ..       5     289 ..       4     291 .. 0.78

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 3.5e-21
                  EEEE----HHHHHHHHHHHTTSEEEEECSSSSSTB.TSGGHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCTCEEEHCHEEEEEETTTTEEEEEEEEEEEEEETEEEEEEESEEEE---.-B----.TGCCHTEEEC.SSHHHHHHHHHHC.STTTEEEEE-...............................................................................................................-GGGCHHSS--BES.SSSBBE-TTSBCS.STTEEE---TCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...............................................................................................................xxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxx RF
    PF07992.9   2 vviiGgGpaGlsaakdlaqkglkvaliekeggtcv.nrgclpkkllvevaegreeleelalkvvdelekagieilleknvvkidsgskkvvqeagavkadekgkgrdikydklviAtG.arprtl.gipgvevailargvedsdeilell.ekpkkvvvvG...............................................................................................................tkllaekagveldp.rggivVdeylrts.vpgiyaiGDvae 197
                  +viiG+G aG++aa+ l++ +++v+li++++  ++ ++ + p ++ +   ++   l   + k+    +++++     ++v  i  +++       +v   + ++++   y++l+iAtG ++++ +  ip +      ++v +  +++  + +++k++vvvG                                                                                                                k +  +  +++++ +  ++V+e+l++   p+i+aiGD+a+
  MMETSP0890-20130614|26952_1   5 IVIIGAGYAGTQAALSLDK-EFNVILITRTD--YFlHNVGTPRAVVHPELTESYLLP--YDKML---KNGQVIQ---AQVEAI-TTEG------IKV---RGSDEFIKGYKYLIIATGtSYAFPFkCIPAS-----RKEVPQLYQAVAEKiKSAKNIVVVGggstgletcaeiaeeypaikvylvhshlqvmmpgpwrdkfikkltkqlatyknlelvmedrieppeeeeqldtdgfvarkfsiptsgkvttkkgrelpcdllfwaiggrinSKSY--ESTLPTNEkNKCLKVNEFLQVEgFPNIFAIGDCAD 289
                  79***************86.*******7765..444666777777766655554433..22444...4433333...554444.4444......122...44567999**********8888877556643.....3667666666555405566**************************************************99999999999999999999999999999999999999999999999999999999999999888655555..4567775536667********88**********97 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.066        50       1      19 [.       6      24 ..       5      37 .. 0.72
   2 !   25.6   0.0   1.3e-08   9.6e-06      97     197 ..      57     164 ..      46     176 .. 0.67
   3 ?    0.9   0.0      0.46   3.5e+02     116     161 ..     227     274 ..     183     317 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.066
    PF13738.1  1 lVvGAGaaGlafadnllee 19
                 +++GAG aG ++a  l +e
  MMETSP0890-20130614|26952_1  6 VIIGAGYAGTQAALSLDKE 24
                 5888888888888887665 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.3e-08
    PF13738.1  97 lk...vrlstrvtevere...gdrfevrvtdgrevr.akalvlatgavskpktlg.lpgsadkeavhle.evlepedlkgkrvvVvGgghsAidallnLldl..gqkltwit 197
                  l+   +  +++v +++ e    ++ +vr  d+  ++ +k+l++atg+ s   + + +p  + ke+ +l   v e+++   k++vVvGgg ++ +++ ++++   + k+++++
  MMETSP0890-20130614|26952_1  57 LPydkMLKNGQVIQAQVEaitTEGIKVRGSDE-FIKgYKYLIIATGT-SYAFPFKcIPA-SRKEVPQLYqAVAEKIK-SAKNIVVVGGGSTGLETCAEIAEEypAIKVYLVH 164
                  54444445556666654444456678888888.7778*********5.44443332444.44566566514555555.67********************995534555554 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.46
    PF13738.1 116 evrvtdgrevrakalvlatgavskpktlglpg..sadkeavhleevle 161
                  +v++++gre+ ++ l++a+g++ + k++ +     ++ ++++++e+l+
  MMETSP0890-20130614|26952_1 227 KVTTKKGRELPCDLLFWAIGGRINSKSYESTLptNEKNKCLKVNEFLQ 274
                  46666669999*********9877777665443222335555555544 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.6e-05     0.058       2      36 ..       5      38 ..       4      48 .. 0.86
   2 !   16.7   0.0   8.1e-06    0.0062       1      63 [.     134     201 ..     134     212 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.6e-05
                 EEEE---HHHHHHHHHHHHTTSEEEEEESSSSSST CS
   PF00070.22  2 vvvvGGGyiGlElAaalaklgkkVtvierrdrllr 36
                 +v++G+Gy G  +A  l k   +V +i r d +l 
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDKEF-NVILITRTDYFLH 38
                 8****************7744.7********9993 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 8.1e-06
                  EEEEE---HHHHHHHHHHHH..TTSEEEEEESSSSSS...TTSSHHHHHHHHHHHHHTTEEEETTEEE CS
   PF00070.22   1 rvvvvGGGyiGlElAaalak..lgkkVtvierrdrll...raldeeiakilqkklekngievllntkv 63 
                  ++vvvGGG +GlE  a+ a+   + kV++++   +++   +  d+ i k+ ++  + ++ e++++ ++
  MMETSP0890-20130614|26952_1 134 NIVVVGGGSTGLETCAEIAEeyPAIKVYLVHSHLQVMmpgPWRDKFIKKLTKQLATYKNLELVMEDRI 201
                  59***********866665523347*******999996544444444444444445557776666655 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.4e-05     0.026       2      34 ..       5      35 ..       4      47 .. 0.80
   2 ?    4.7   0.0     0.014        10     106     155 ..      61     103 ..      38     132 .. 0.64
   3 !    6.8   0.2    0.0031       2.3       2      28 ..     135     163 ..     134     172 .. 0.76
   4 ?   -0.1   0.0      0.37   2.8e+02      94     117 ..     176     199 ..     168     257 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.4e-05
                 EEEE-------HHHHHHHH----EEEEES-GGG CS
   PF01134.17  2 viViGgGhAGceAAlaaarlGakvlLithkldt 34
                 +++iG+G AG+ AAl + +  ++v+Lit ++d 
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDK-EFNVILIT-RTDY 35
                 799************9987.68999994.4444 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.014
                  HTSTTEEEEES-EEE--BSSSBB---EE----B-EES..EEEE-----B--- CS
   PF01134.17 106 enepnleiieeeveeliveekkvkgvvtedgetikak..avviatGtflkgk 155
                  +  +n ++i+++ve + +     +g++ +   ++ +     +iatGt    +
  MMETSP0890-20130614|26952_1  61 KMLKNGQVIQAQVEAITT-----EGIKVRGSDEFIKGykYLIIATGT----S 103
                  555667899999999976.....67666554444433359*******....2 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0031
                  EEEE-------HHHHHHHH-..---EEEE CS
   PF01134.17   2 viViGgGhAGceAAlaaarl..GakvlLi 28 
                  ++V+GgG  G+e ++++a+    +kv L+
  MMETSP0890-20130614|26952_1 135 IVVVGGGSTGLETCAEIAEEypAIKVYLV 163
                  89**************9986334566665 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.37
                  HHHHHHHHHHHHHTSTTEEEEES- CS
   PF01134.17  94 relyskevteklenepnleiieee 117
                  r+++ k++t++l +++nle++ e 
  MMETSP0890-20130614|26952_1 176 RDKFIKKLTKQLATYKNLELVMED 199
                  89999**************97654 PP

>> PF13434.1  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.92     7e+02     193     224 ..       5      33 ..       2      56 .. 0.77
   2 !   20.7   0.0   1.9e-07   0.00015     149     224 ..      94     166 ..      59     172 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.92
    PF13434.1 193 iavvGsGqSaaeifldllrrqkaaelkwvtrs 224
                  i+++G+G  +   +l l ++++   + ++tr+
  MMETSP0890-20130614|26952_1   5 IVIIGAGYAGTQAALSLDKEFN---VILITRT 33 
                  89*******9999988877766...5556655 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 1.9e-07
    PF13434.1 149 rnlvlgtGtepylPealkklegkervfhsseylerkeellkkkriavvGsGqSaaeifldllrrqkaaelkwvtrs 224
                  + l+++tGt+  +P  + + +  ++v    + + +k   +++k+i+vvG+G ++ e + +++++++a ++ +v++ 
  MMETSP0890-20130614|26952_1  94 KYLIIATGTSYAFPFKCIPASR-KEVPQLYQAVAEK--IKSAKNIVVVGGGSTGLETCAEIAEEYPAIKVYLVHSH 166
                  679***********99998874.7787777766665..799**************************999998765 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0017       1.3       2      31 ..       5      31 ..       5      41 .. 0.85
   2 !   11.1   0.0   0.00016      0.12       2      41 ..     135     174 ..     134     200 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0017
    PF05834.7  2 lvivGaGlAglllAlrlreakpglrvllid 31
                 +vi+GaG Ag   Al+l    ++++v+li 
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSL---DKEFNVILIT 31
                 69***************...6779999994 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00016
    PF05834.7   2 lvivGaGlAglllAlrlreakpglrvllidagpkllfgnn 41 
                  +v+vG+G  gl   ++++e+ p ++v l+  + ++++++ 
  MMETSP0890-20130614|26952_1 135 IVVVGGGSTGLETCAEIAEEYPAIKVYLVHSHLQVMMPGP 174
                  79***************************99999988875 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.03        23      20      46 ..       5      30 ..       3      34 .. 0.81
   2 !   13.2   0.0     4e-05      0.03      18      51 ..     133     168 ..     114     177 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.03
                 EEEE-------HHHHHHHTSTS-EEEE CS
   PF01946.12 20 vvivGaGssGltaayylakkdlkvail 46
                 +vi+GaG +G  aa  l k+ ++v+++
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDKE-FNVILI 30
                 79*************99875.555555 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 4e-05
                  EEEEEE-------HHHHHHHTS..TS-EEEEESSS- CS
   PF01946.12  18 sDvvivGaGssGltaayylakk..dlkvailerkls 51 
                  +++v+vG+Gs+Gl +   +a++   +kv ++ ++l 
  MMETSP0890-20130614|26952_1 133 KNIVVVGGGSTGLETCAEIAEEypAIKVYLVHSHLQ 168
                  589******************9999***99999875 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.2e-05     0.055       2      33 ..       5      35 ..       5      40 .. 0.87
   2 ?    2.7   0.0     0.054        41       2      21 ..     135     154 ..     134     166 .. 0.81
   3 ?   -0.9   0.0      0.65     5e+02     382     409 ..     269     291 ..     267     297 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.2e-05
                 EEEE-------HHHHHHHCHTT-EEEE-SS-C CS
   PF00890.19  2 vvViGsGlAGlaAAleaaeaglkvavvekeqe 33
                 +v+iG+G AG  AAl++ ++  +v++++ +++
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSL-DKEFNVILITRTDY 35
                 69*************88.77788**9999876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.054
                  EEEE-------HHHHHHHCH CS
   PF00890.19   2 vvViGsGlAGlaAAleaaea 21 
                  +vV+G+G  Gl   +e+ae+
  MMETSP0890-20130614|26952_1 135 IVVVGGGSTGLETCAEIAEE 154
                  79**********99999985 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.65
                  -------......S-B--EE-----B-- CS
   PF00890.19 382 tdenarvldadgqpipGLYAaGevaggg 409
                  ++e ++v     +  p+ +A+G +a +g
  MMETSP0890-20130614|26952_1 269 VNEFLQV-----EGFPNIFAIGDCADSG 291
                  5666666.....6789*********776 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00076      0.57       2      31 ..       5      33 ..       4      66 .. 0.83
   2 ?   -1.7   0.0       1.2   9.2e+02     161     200 ..      65     101 ..      45     104 .. 0.78
   3 !    8.4   0.2     0.001      0.76       2      31 ..     135     166 ..     134     171 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00076
                 EEEE----HHHHHHHHHHHTT-EEEEEESS CS
   PF01266.19  2 vviiGgGivGlstAyeLarrglkVtllekg 31
                 +viiG+G++G  +A+ L +  ++V+l+ + 
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDK-EFNVILITRT 33
                 8**************9987.5777777665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.2
                  --EEEESEEEEEEEEETTCEE.EEEEES.EEE.EEEEE--- CS
   PF01266.19 161 GveiiegtkVtglereggrvsgvetedgsira.dkvvlAaG 200
                  ++++i+  +V+ + +eg +   v+ +d+ i+  + +++A+G
  MMETSP0890-20130614|26952_1  65 NGQVIQA-QVEAITTEGIK---VRGSDEFIKGyKYLIIATG 101
                  5778888.88888877544...7788888877788888888 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.001
                  EEEE----HHHHHHHHHHH..TT-EEEEEESS CS
   PF01266.19   2 vviiGgGivGlstAyeLar..rglkVtllekg 31 
                  +v++GgG +Gl t  e a+  + +kV l+ ++
  MMETSP0890-20130614|26952_1 135 IVVVGGGSTGLETCAEIAEeyPAIKVYLVHSH 166
                  9******************9999999999765 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00038      0.29       2      43 ..       5      42 ..       4      54 .. 0.90
   2 ?    4.3   0.0     0.015        12       1      33 [.     134     165 ..     134     172 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00038
                 EEEE-------HHHHHHHHCTTT-SEEEEEE-SSS------- CS
    PF04820.9  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe 43
                 ivi+G+G aG  aA  l k +    +v l+   + + ++vG 
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDKEF----NVILITRTDYFLHNVGT 42
                 9******************99....89999999999999995 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.015
                  EEEEE-------HHHHHHHHCTTT-SEEEEEE- CS
    PF04820.9   1 kivivGGGtaGwlaAaalakalkgklevtlves 33 
                  +iv+vGGG+ G  + a +a+     ++v lv s
  MMETSP0890-20130614|26952_1 134 NIVVVGGGSTGLETCAEIAEEYPA-IKVYLVHS 165
                  69************9999999944.99999987 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0055       4.2       1      31 [.       5      34 ..       5      49 .. 0.87
   2 ?    5.6   0.1     0.018        14       1      27 [.     135     163 ..     135     169 .. 0.83
   3 ?    0.4   0.0      0.72   5.5e+02      44      84 ..     282     324 ..     262     333 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0055
                 EEEE---HHHHHHHCCCHH--..EEEEES-H CS
   PF02254.13  1 iiiiGlGrvGrslaeeLregekdvvvidkde 31
                 i+iiG+G  G++ a  L ++  +v++i + +
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDKEF-NVILITRTD 34
                 89*****************88.599998865 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.018
                  EEEE---HHHHHHHCCCHH--....EEEE CS
   PF02254.13   1 iiiiGlGrvGrslaeeLrege..kdvvvi 27 
                  i+++G G +G + + e+ e++   +v ++
  MMETSP0890-20130614|26952_1 135 IVVVGGGSTGLETCAEIAEEYpaIKVYLV 163
                  89****************98856446665 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.72
                  EEE--TTSHHHHHHTT-..----EEEE--SSHHHHHHHHHHHC CS
   PF02254.13  44 vvvgdatdeevLeeagi..eeadaviaatgddeanllavllak 84 
                  + +gd++d  + +  +   ++adav++ ++  ean  a+  +k
  MMETSP0890-20130614|26952_1 282 FAIGDCADSGAAKTVNFarQTADAVVTNIKRIEANKKAIPFVK 324
                  5567777777777776522579999999999999988776665 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.054        41       1      19 [.       6      24 ..       6      57 .. 0.86
   2 ?   -0.9   0.0       1.5   1.1e+03     118     155 ..      67     102 ..      43     103 .. 0.80
   3 ?    6.4   0.0     0.008       6.1       1      45 [.     136     178 ..     136     189 .. 0.84
   4 ?   -2.3   0.0       3.8   2.9e+03     135     154 ..     227     246 ..     221     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.054
    PF13454.1  1 aIiGaGprGlsvlerLlar 19
                 +IiGaG +G+ ++ +L ++
  MMETSP0890-20130614|26952_1  6 VIIGAGYAGTQAALSLDKE 24
                 6***********9999666 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.5
    PF13454.1 118 rvhraevvdlepegdgqtvlladgesleadaVvlAtGh 155
                  +v++a+v ++++e  g  v+ +d+    +++ ++AtG+
  MMETSP0890-20130614|26952_1  67 QVIQAQVEAITTE--GIKVRGSDEFIKGYKYLIIATGT 102
                  6889999999988..66688899999999999999996 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.008
    PF13454.1   1 aIiGaGprGlsvlerLlarakkekpleitvfdps.pagaggvwrtd 45 
                  +++G+G +Gl ++++++++      +++ ++  + ++   g+wr++
  MMETSP0890-20130614|26952_1 136 VVVGGGSTGLETCAEIAEEY---PAIKVYLVHSHlQVMMPGPWRDK 178
                  69*****************6...88999999986466668888875 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 3.8
    PF13454.1 135 tvlladgesleadaVvlAtG 154
                   v++++g++l +d  + A+G
  MMETSP0890-20130614|26952_1 227 KVTTKKGRELPCDLLFWAIG 246
                  6999************9999 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0027         2       3      32 ..       5      33 ..       3      40 .. 0.83
   2 ?    3.9   0.0     0.017        13       2      22 ..     134     154 ..     133     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0027
    PF03486.9  3 viviGgGaAGlmaAisaakrgakVllldka 32
                 +++iG+G AG  aA+s+ +++ +V+l+ ++
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSL-DKEFNVILITRT 33
                 79**************9.667788887665 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.017
    PF03486.9   2 dviviGgGaAGlmaAisaakr 22 
                  +++v+GgG  Gl +++++a++
  MMETSP0890-20130614|26952_1 134 NIVVVGGGSTGLETCAEIAEE 154
                  79**********766666544 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.084        63      10      68 ..       5     100 ..       2     104 .. 0.56
   2 ?    8.0   0.0    0.0039       2.9       7      36 ..     132     161 ..     129     243 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.084
                  EEEE-------HHHHHHTT---EEEEE-SS--TT-................................T...........-.............TT--EEEEE-- CS
    PF13241.1  10 vlvvGgGevAarkvrklleagakvtvvspeikele................................elvklaeeefeed.............legadlviaat 68 
                  ++++G+G  +++ + +l ++  +v++++ + ++l+                                     + e                  ++g++ +i+at
  MMETSP0890-20130614|26952_1   5 IVIIGAGYAGTQAALSLDKE-FNVILITRTDYFLHnvgtpravvhpeltesyllpydkmlkngqviqA----QVEA---IttegikvrgsdefIKGYKYLIIAT 100
                  799*****999999988877.89999888875555455555555555555555555544444322221....1111...1222223333334466666666666 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0039
                  T-EEEEE-------HHHHHHTT---EEEEE CS
    PF13241.1   7 gkkvlvvGgGevAarkvrklleagakvtvv 36 
                   k+++vvGgG+ +++ +  ++e+   ++v+
  MMETSP0890-20130614|26952_1 132 AKNIVVVGGGSTGLETCAEIAEEYPAIKVY 161
                  589**************9999988666664 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.012       8.7       1      22 [.       7      27 ..       7      36 .. 0.82
   2 ?    5.0   0.0     0.029        22       1      25 [.     137     161 ..     137     167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.012
    PF13450.1  1 IvGaGlsGlvaAylLakagkdv 22
                 I+GaG +G  aA  L k+ ++v
  MMETSP0890-20130614|26952_1  7 IIGAGYAGTQAALSLDKE-FNV 27
                 9************99986.555 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.029
    PF13450.1   1 IvGaGlsGlvaAylLakagkdvlvl 25 
                  +vG+G +Gl +++++a++   ++v+
  MMETSP0890-20130614|26952_1 137 VVGGGSTGLETCAEIAEEYPAIKVY 161
                  8**************9987777776 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00097      0.74       4      38 ..       5      38 ..       2      52 .. 0.79
   2 ?    0.3   0.3      0.34   2.6e+02       4      21 ..     135     152 ..     133     166 .. 0.83
   3 ?   -0.2   0.0      0.47   3.6e+02     207     243 ..     153     193 ..     145     211 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00097
                 EEE--------HHHHHHHHH.HHEEEEESSSCCCH CS
   PF01494.14  4 VlIVGaGpaGlmlallLseaGvrvvlvekhsttvv 38
                 ++I+GaG aG  +al L +   +v+l+++ +    
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDKE-FNVILITRTDYFLH 38
                 35******************.******99876544 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.34
                  EEE--------HHHHHHH CS
   PF01494.14   4 VlIVGaGpaGlmlallLs 21 
                  +++VG+G +Gl +  + +
  MMETSP0890-20130614|26952_1 135 IVVVGGGSTGLETCAEIA 152
                  68*********8876655 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.47
                  SE....SCEEEEC----EEEEEECCTTEEEEEE-B-TT--G CS
   PF01494.14 207 eg....vvlilsaesrgvmviPlesanlerfyvqvearaek 243
                  e+     v++ +++ +++m +P+++++ ++ + q+ ++++ 
  MMETSP0890-20130614|26952_1 153 EEypaiKVYLVHSHLQVMMPGPWRDKFIKKLTKQLATYKNL 193
                  445566788999999999*******9999999888877655 PP

>> PF03721.9  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0061       4.6       3      29 ..       5      30 ..       4      42 .. 0.89
   2 ?    3.2   0.1     0.057        43       2      23 ..     134     155 ..     133     173 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0061
                 EEEE------------TTT---EEE-- CS
    PF03721.9  3 iaviGlGYvGlptavvlaekghevvgv 29
                 i +iG+GY G  +a  l +  ++v+++
  MMETSP0890-20130614|26952_1  5 IVIIGAGYAGTQAALSLDKE-FNVILI 30
                 89*************99998.788876 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.057
                  EEEEE------------TTT-- CS
    PF03721.9   2 kiaviGlGYvGlptavvlaekg 23 
                  +i v+G G  Gl t++ +ae  
  MMETSP0890-20130614|26952_1 134 NIVVVGGGSTGLETCAEIAEEY 155
                  89****************9984 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0071       5.4      22      36 ..       4      18 ..       1      23 [. 0.89
   2 ?    2.9   0.1     0.084        63      19      45 ..     131     158 ..     113     166 .. 0.76
   3 ?   -3.5   0.0       8.1   6.1e+03      36     110 ..     293     310 ..     269     324 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0071
                 EEEEE-------HHH CS
   PF01262.16 22 kvvviGaGvvGlgAi 36
                 ++v+iGaG +G++A+
  MMETSP0890-20130614|26952_1  4 VIVIIGAGYAGTQAA 18
                 589***********8 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.084
                  ---EEEEE-------HH.HHHHHH---E CS
   PF01262.16  19 kpakvvviGaGvvGlgA.ievakglgae 45 
                  ++ ++vv+G+G  Gl+  +e+a++ +a+
  MMETSP0890-20130614|26952_1 131 SAKNIVVVGGGSTGLETcAEIAEEYPAI 158
                  45789**********8625788888876 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 8.1
                  HHHHHH---EEEE--SSTTHHHHHHH----BSSS.-TTTCTTSB-B-----HHHHHHHHHHHHHHTT-SEEEE-- CS
   PF01262.16  36 ievakglgaevvaldkrperleqveslgaefvevdrseeeerkeydkeeseefiesntellaekiapadlvivta 110
                  +++                                                        ++a + a  d v++++
  MMETSP0890-20130614|26952_1 293 AKT-------------------------------------------------------VNFARQTA--DAVVTNI 310
                  333.......................................................33333333..3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      521  (0.0381071); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:01.05
# Mc/sec: 963.11
//
Query:       MMETSP0890-20130614|26958_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-07   30.3   0.0    6.4e-07   29.6   0.0    1.4  1  PF13640.1 2OG-Fe(II) oxygenase superfamily
     0.0013   18.1   0.0     0.0035   16.8   0.0    1.6  1  PF13661.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   9.4e-11   6.4e-07       2      86 ..     109     199 ..     108     211 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 9.4e-11
    PF13640.1   2 qlnrygpggflspHvDnse............sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpg.rlvlFks.......drslHrvtpv 86 
                  q+ ry  g+f++pH+D +              ++r+ t+l+ylnd     +GG++++ +          ++     pk+g  l++F+        ++ lH+++ +
  MMETSP0890-20130614|26958_1 109 QVGRYLTGEFYKPHYDAFDtssadgrrfaqnGGQRVGTVLIYLNDVP---QGGATFFSK------LGLRIA-----PKQGtALIFFPAtlsgqldEQYLHAAETA 199
                  6789*************99*************************988...******996......456677.....****7777777688888877888887776 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.1e-07    0.0035      17      61 ..     112     162 ..     108     164 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.1e-07
    PF13661.1  17 ratrgdffdpHiDadpsql.........gkprflsallYLNedwdadfdGgtlf 61 
                  r+ +g+f++pH+Da    +         g +r  ++l+YLN   d+  +G+t+f
  MMETSP0890-20130614|26958_1 112 RYLTGEFYKPHYDAFDTSSadgrrfaqnGGQRVGTVLIYLN---DVPQGGATFF 162
                  4789*********9888888*********************...9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 668.61
//
Query:       MMETSP0890-20130614|26985_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-15   57.5   0.1    2.3e-15   56.9   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
    4.9e-12   45.6   0.0    6.8e-12   45.2   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    3.9e-05   22.8   0.0    0.00013   21.1   0.0    1.8  1  PF00326.16 Prolyl oligopeptidase family
     0.0004   19.6   0.0       0.15   11.2   0.0    2.2  2  PF01738.13 Dienelactone hydrolase family
     0.0016   17.8   0.0        1.4    8.1   0.0    2.2  2  PF02230.11 Phospholipase/Carboxylesterase
     0.0017   17.7   0.0      0.042   13.1   0.0    2.0  2  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
      0.015   14.7   0.1       0.33   10.3   0.0    2.2  2  PF00561.15 alpha/beta hydrolase fold
      0.047   13.1   0.0       0.07   12.5   0.0    1.4  1  PF07859.8  alpha/beta hydrolase fold
       0.17   11.5   0.1        1.1    8.8   0.0    2.0  1  PF05728.7  Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.5e-18   2.3e-15      22     216 ..     115     298 ..      92     304 .. 0.73

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 1.5e-18
                  T.TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.....--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEE.EE---SSSS CS
    PF12697.2  22 a.agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl....rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpgarv.vvlpgagHl 216
                  + + y+ ++ D+ G GrS ++ +    t+ ++++d  all+ +      r++v++G   Gg++a ++a +rpdlv g+v +++ +             ++++ll  + +  +   ++ ++  +++  + ++v   +++l+e  r  l  + + e+   +++Pv +++g++D+ vp+++a rlae++   +v v l+ a H+
  MMETSP0890-20130614|26985_1 115 RrNKYTFIVADYYGIGRSKGDMR--VATISRWLEDTMALLEIVASpsdhRRIVVCGAGVGGWIACLVAVKRPDLVGGIVGLAADP-------D-----FTEDLLLKGLP--QETIDSIMTGKVHEVKWGDRVYPITKSLIEDARNHLILQGP-ERGLPIKCPVRLLHGTRDEEVPYQTAIRLAERIETDDVlVSLSRAQHY 298
                  2369****************987..5678888888888887776677789***********************************.......6.....55555554322..22223333344456666666666666777666553444444.555568**************************9876653789999997 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   4.5e-15   6.8e-12       3     142 .]      93     298 ..      91     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 4.5e-15
    PF12695.2   3 vlvhGaggd.ssayeplaealakr.gfavvavdlpghgasegaa.......aakrvl.........aadlldleriilvGhSlGGgvalelagrd.drvkglvllapfpd.gedlakltl..................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                  v+++  +    +a+++  +++ +r ++  ++ d+ g g+s+g         +    l         +a+  d++ri++ G   GG++a+++a ++ d v g+v la+ pd +edl  ++l                                                  pv l+hGtrD+ vp++ a +la+++ +d  lv +  a H+
  MMETSP0890-20130614|26985_1  93 VFLPSLALPkVNAMSSSLRTWCRRnKYTFIVADYYGIGRSKGDMrvatisrW----LedtmalleiVASPSDHRRIVVCGAGVGGWIACLVAVKRpDLVGGIVGLAADPDfTEDLLLKGLpqetidsimtgkvhevkwgdrvypitksliedarnhlilqgperglpikcPVRLLHGTRDEEVPYQTAIRLAERIETDDVLVSLSRAQHY 298
                  55555555424567777777777769*************9766634433332....344434333335444**********************99899*********55555555544444455588888999**************************************************************************996 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.7e-08   0.00013      43     176 ..     143     289 ..     105     301 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 8.7e-08
                  HHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GGG---EEEE-----TTTGGGS-......---GGGGT---TTSHHH.HHHHHHH-GGG---..................----EEEEEETT-SSS-THHHHHHHHHHH..--S CS
   PF00326.16  43 nefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwltymsdtsl....lteaeymeygnpeeneegyeelspyspadnvk..................aypplllihGeeDdrvppaealklvaaLqkagkn 176
                  + ++D +a +e +a+    d++r+++ G+  GG+ +  ++ +rpdl  ++v  ++  d + + + + l    +    +++     + +e  ++   + p+++                    +++p+ l+hG+ D+ vp+++a++l+ + +  ++ 
  MMETSP0890-20130614|26985_1 143 RWLEDTMALLEIVASP--SDHRRIVVCGAGVGGWIACLVAVKRPDLVGGIVGLAADPDFTEDLLLKGLpqetIDS-IMTG-----KVHE-VKWGDRVYPITKSLiedarnhlilqgperglpIKCPVRLLHGTRDEEVPYQTAIRLAERIETDDVL 289
                  4578888888888776..89******************************9999999988888887664433222.2222.....2222.3333333333333333333445899********************************999876665 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   9.6e-05      0.15      74     123 ..     137     187 ..     124     207 .. 0.75
   2 !    6.2   0.0    0.0032       4.9     143     179 ..     255     291 ..     247     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.6e-05
   PF01738.13  74 reeavlddlkaainylkslpe.vstkkvgvvGfClGGalalllAaenpevd 123
                  r +++ ++l+++++ l+ + +  +  +++v+G  +GG++a l+A + p++ 
  MMETSP0890-20130614|26985_1 137 RVATISRWLEDTMALLEIVASpSDHRRIVVCGAGVGGWIACLVAVKRPDLV 187
                  456666777665555554443157799******************996554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0032
   PF01738.13 143 kikapilahlgeeDpfipaeaaedleealakankdle 179
                   ik+p+  ++g++D+ +p ++a +l e + +  + ++
  MMETSP0890-20130614|26985_1 255 PIKCPVRLLHGTRDEEVPYQTAIRLAERIETDDVLVS 291
                  59************************99977766655 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00094       1.4      99     137 ..     156     194 ..     127     201 .. 0.84
   2 !    7.5   0.0    0.0014       2.2     154     184 ..     255     286 ..     245     315 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00094
   PF02230.11  99 kkgipssriiigGFSqGaalalylaltspkplggivafs 137
                  + + +  ri++ G + G+ +a   a++ p  +ggiv+++
  MMETSP0890-20130614|26985_1 156 ASPSDHRRIVVCGAGVGGWIACLVAVKRPDLVGGIVGLA 194
                  4557899*****************************997 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0014
   PF02230.11 154 a.kipilqlHgeeDevvplalgkaakellktl 184
                  + k p+ +lHg+ De vp++ + +++e + t 
  MMETSP0890-20130614|26985_1 255 PiKCPVRLLHGTRDEEVPYQTAIRLAERIETD 286
                  457899******************99998775 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.8e-05     0.042      56     141 ..     117     202 ..      81     212 .. 0.88
   2 ?    2.2   0.0     0.058        89     225     270 ..     254     297 ..     224     299 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.8e-05
                  ---EEEEEE----TT------TT.TCCHHHHHHHHHHHHHHCTTBE-EEEE---TT---HHHHHTTS--TTB-EBEEBSB-SBCHHI CS
   PF02129.13  56 rGYavVvvdvrGtgaSeGeftvg.sedevedgadvidWlakqpwsnGkVGmtGiSYdGttqlaaaatgvpalkaivpesaisdlyde 141
                  + Y+++v+d  G g S+G++ v+  ++  ed+ + ++ +++ p    ++ + G   +G+++ ++a+++++ +  iv ++a  d++++
  MMETSP0890-20130614|26985_1 117 NKYTFIVADYYGIGRSKGDMRVAtISRWLEDTMALLE-IVASPSDHRRIVVCGAGVGGWIACLVAVKRPDLVGGIVGLAADPDFTED 202
                  56********************9889999*******9.8899****************************99999999998888875 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.058
                  HG--SEEEEEE--B-SSS-.HHHHHHHHHHCCTT-..EEEEE---BS CS
   PF02129.13 225 dkvkvpvllvsGwnDwnvk.rgviklyealkesgskekklvlgpwtH 270
                    +k+pv l++G  D++v  +++i+l e +++ + +   + l +++H
  MMETSP0890-20130614|26985_1 254 LPIKCPVRLLHGTRDEEVPyQTAIRLAERIETDD-V--LVSLSRAQH 297
                  579***************9999999999888887.4..555566655 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00022      0.33       2      91 ..     120     206 ..     119     225 .. 0.69
   2 ?    2.8   0.0     0.042        63     156     202 ..     222     284 ..     206     305 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00022
                  EEEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCH CS
   PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavldalglkk.ltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvln 91 
                  + i+ D +G g+S+    +  + ++  ++  +l  ++++  +++ +++ G   GG ia+ +a + pd v ++v l++   ++d+  + +l 
  MMETSP0890-20130614|26985_1 120 TFIVADYYGIGRSKGD-MRVATISRWLEDTMALLEIVASPSDHRrIVVCGAGVGGWIACLVAVKRPDLVGGIVGLAA---DPDFTEDLLLK 206
                  5688899999999951.2444444444444444444444444446****************************9999...88876666655 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.042
                  CHCHHHHHHHHHCCHHHT................-TSSEEEEECCTTSCCHHCHHHHHHHCST CS
   PF00561.15 156 laalgrdlvwdvtetlkt................ilvptlvisgtdDplvpykaseklaelip 202
                  + +++ d+v ++t+ l                  i++p+ +++gt D  vpy+++ +lae i 
  MMETSP0890-20130614|26985_1 222 HEVKWGDRVYPITKSLIEdarnhlilqgperglpIKCPVRLLHGTRDEEVPYQTAIRLAERIE 284
                  4556666666666666555666777777777777*******************9988888775 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.6e-05      0.07      49      94 ..     145     185 ..     137     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.6e-05
                  HHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH CS
    PF07859.8  49 vedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrard 94 
                  +ed +a l+ +a+       d +rivv+G  +GG +a  va++  d
  MMETSP0890-20130614|26985_1 145 LEDTMALLEIVASP-----SDHRRIVVCGAGVGGWIACLVAVKRPD 185
                  67888888888887.....799*******************98776 PP

>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00073       1.1      44      79 ..     147     182 ..     131     307 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00073
    PF05728.7  44 qalkeleklvaelgddnillvGssLGGyyatrlger 79 
                  ++++ le + + +  ++i+++G + GG+ a  ++ +
  MMETSP0890-20130614|26985_1 147 DTMALLEIVASPSDHRRIVVCGAGVGGWIACLVAVK 182
                  55555554444455555************9888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.40s 00:00:01.12 Elapsed: 00:00:01.30
# Mc/sec: 608.31
//
Query:       MMETSP0890-20130614|26990_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-69  231.5   0.0    1.2e-68  231.3   0.0    1.1  1  PF00152.15 tRNA synthetases class II (D, K and N)
    0.00057   19.0   0.0     0.0046   16.0   0.0    2.0  2  PF01409.15 tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
       0.11   12.8   0.0        0.3   11.5   0.0    1.8  1  PF13174.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00152.15  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3   0.0   2.5e-72   1.2e-68       3     332 ..      60     410 ..      58     413 .. 0.90

  Alignments for each domain:
  == domain 1    score: 231.3 bits;  conditional E-value: 2.5e-72
                  HHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SCEE-----.--EEEEE-...............----ECCEEEEE-S-SHHHHHHHCH---SEEEEEEEEE----S-STT-SSEEEEEEEEECT-SHHHHHHHHHHHHHHHHHHHHHH...............S.HHHH..T-SSSSS.--EEEHHHHHHHHHHTS---------EE---T.S----TH--HHHHHHHHHHHHH--SSEEEEE--BCCCSTTTBBBCCCCTTBBS-EEEEE--.-EEEE--EB---HHHHHHHHHH----CCCHHHHCHHHHHCCT-----EE-EEE-EHHHHHHHTT-SSGGGGSSS-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxx..xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00152.15   3 elrlkyryldlrreklqknlklrskiikairefldergFleveTPiLtkstpegaardflvps...............kkgkfyakeayLpqSpqlykqllmvaGfdrvfqiarcFRdEdlradrhppEFtqldlEmsfvdeedvmklveelikevvkkvlek...............eeelkl..gvelkkp.fpritykeaiekygsdkpdlrfelelkdltel.kklefkvgalreelaeeklidekkskplfvvdfPleehpftkpkeedekalaeafDlvlng.vElggGseRihdpeeqekrfeeqgldeeeaeekfgfllealkyGapphgGialGlDRlvmlltglesIreviaFpk 332
                  e ++++ +l+ r++  +++ ++r+ ++ a++ef+++rgFl ++TP++t+++ ega ++f+v +                 ++f+ +++ L++S ql  ++  va +  +++++++FR+E+++++rh++EF++++ E+sf++  d ++l+ + +k++v +vl                  +      +  +++p f +++y++ai+ +++   d  +     +   + ++++   g ++ +++e++l+d   + p++++++P++ ++f+++ ++d+ +++ a+D+++++ +E++gGs+R+++ +++ +r++e+g+d+ +     +++ +++kyG +ph+G++lG++Rlvml+tg ++Ir+vi+Fp+
  MMETSP0890-20130614|26990_1  60 EHLRQNAHLRARSRLGSAVARTRHALAFATHEFFQKRGFLYIHTPLITSADAEGAGEQFTVTTllpqsdvenkqikidYAQDFFGRKCGLTVSGQLNVETHAVA-LSDCYTFGPTFRAENSHTSRHLAEFWMIEPEVSFANLYDDINLATDYLKYCVAAVLARcdddlaffesvheagLR---ArlKSLINTPkFTQLDYTQAISLLQKVVQDHPK-----NKEPIfENSNIVWGMDLGSEHEKYLTDIIFNGPVVLINYPKDIKAFYMKLNPDN-QTVAAMDILVPKiGEIIGGSQREDNFNILVQRCRENGIDPHH----ISWYTDLRKYGSVPHAGFGLGFERLVMLVTGCPNIRDVIPFPR 410
                  5567899******************************************************************999999999999*******************.*******************************************************87789999887666433211...122222234449999999999999887766555.....2233445555555899*******9999999***********************9.************9***************************99....******************************************8 PP

>> PF01409.15  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.066     3e+02     107     140 ..     169     198 ..     158     215 .. 0.72
   2 !   16.0   0.0     1e-06    0.0046     211     236 ..     380     405 ..     372     408 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.066
   PF01409.15 107 sigrvfRrda.vDathlaeFhqveglvvdenvsla 140
                  ++g +fR ++    +hlaeF  +     + +vs+a
  MMETSP0890-20130614|26990_1 169 TFGPTFRAENsHTSRHLAEFWMI-----EPEVSFA 198
                  56788999994556666666555.....4455555 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1e-06
   PF01409.15 211 vsgfafGlGveRlamlkygieDiRel 236
                  v+  +fGlG+eRl ml +g ++iR++
  MMETSP0890-20130614|26990_1 380 VPHAGFGLGFERLVMLVTGCPNIRDV 405
                  66789*******************97 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.7e-05       0.3      13      32 ..     253     271 ..     249     272 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.7e-05
                  HHHHHHHHHHHHHHHHH-TT CS
    PF13174.1  13 lgdtdeAlealerlikeyPd 32 
                  l d+++A+ +l+++++++P+
  MMETSP0890-20130614|26990_1 253 L-DYTQAISLLQKVVQDHPK 271
                  6.99***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.88
# Mc/sec: 1135.55
//
Query:       MMETSP0890-20130614|26991_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-07   29.7   1.0     0.0008   18.7   0.1    2.7  2  PF01842.20 ACT domain
    4.4e-07   30.0   0.1      0.027   14.6   0.0    2.5  2  PF13291.1  ACT domain


Domain annotation for each model (and alignments):
>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00012       0.8       3      52 ..     244     294 ..     242     301 .. 0.79
   2 !   18.7   0.1   1.2e-07    0.0008       1      52 [.     388     445 ..     388     465 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00012
                  EEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS..EEEEEEEEEECHH CS
   PF01842.20   3 levgvpDrPGlLaevfgaLadrgiNidsisqstsgdk.agivfvtvvvdee 52 
                  ++v + Dr Gl++++++aL   ++ i+s +  t  +  a+  f ++ +d++
  MMETSP0890-20130614|26991_1 244 VRVVATDRTGLIGDISRALEIKNLGIASCIAETLPGDvAHDEFDVIHADTK 294
                  79999**************99999998877777777666666666666655 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.2e-07
                  EEEEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS.......EEEEEEEEEECHH CS
   PF01842.20   1 tvlevgvpDrPGlLaevfgaLadrgiNidsisqstsgdk......agivfvtvvvdee 52 
                  t+l v vpDrPGlL ++ + L+ + ++++ + + t ++        +  ++++vvd+e
  MMETSP0890-20130614|26991_1 388 TTLQVTVPDRPGLLKQIIASLSSLSLSVVGAKIETVEHDgvdapsKTALDTFDVVDAE 445
                  6899*******************************99988887776666666666665 PP

>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.7e-05      0.12       7      41 ..     242     276 ..     238     290 .. 0.87
   2 !   14.6   0.0     4e-06     0.027       7      46 ..     388     427 ..     383     429 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
    PF13291.1   7 adleveasdrkglLaditqviseekaniesvnies 41 
                  ++++v+a+dr+gl+ di+++++ ++  i s+ +e+
  MMETSP0890-20130614|26991_1 242 TKVRVVATDRTGLIGDISRALEIKNLGIASCIAET 276
                  789***********************999987776 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4e-06
    PF13291.1   7 adleveasdrkglLaditqviseekaniesvniesrkkdg 46 
                  ++l+v++ dr+glL++i+  +s+   +++  +ie+ ++dg
  MMETSP0890-20130614|26991_1 388 TTLQVTVPDRPGLLKQIIASLSSLSLSVVGAKIETVEHDG 427
                  79*******************************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:00.95
# Mc/sec: 1314.21
//
Query:       MMETSP0890-20130614|26992_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-52  174.2   0.0    9.8e-52  173.9   0.0    1.1  1  PF00179.21 Ubiquitin-conjugating enzyme
    9.9e-11   41.0   0.0    2.4e-10   39.8   0.0    1.7  1  PF00627.26 UBA/TS-N domain
     0.0075   16.0   0.0      0.011   15.4   0.0    1.4  1  PF05773.17 RWD domain
  ------ inclusion threshold ------
       0.01   15.3   0.1      0.019   14.5   0.0    1.5  1  PF05743.8  UEV domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.0   2.9e-55   9.8e-52       1     138 [.       3     139 ..       3     141 .. 0.98

  Alignments for each domain:
  == domain 1    score: 173.9 bits;  conditional E-value: 2.9e-55
                  HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-.----B-HGGGSTTT--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
   PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvd.etGeicldiLkeekWspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                  r++kel+el++++++g+ +e+++d +l+e++++ikgpegtpYegg++k++i++p+ YPf+PPk+kf tki+HPn++ +tG icldiLk++ Wspalt+++ Lls+q+ll++p+p++p+++++a+++ +n+e++++++k 
  MMETSP0890-20130614|26992_1   3 RVKKELSELQRDTKSGVLVELKSD-DLQELQGTIKGPEGTPYEGGTYKISIQIPKGYPFEPPKMKFLTKIWHPNISsQTGAICLDILKDQ-WSPALTIKTALLSLQALLCSPEPDDPQDAQVATMYLNNYEKFSQTAKF 139
                  799********************8.***************************************************************88.********************************************9976 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   6.9e-14   2.4e-10       5      37 .]     158     190 ..     154     190 .. 0.93

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 6.9e-14
                  HHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
   PF00627.26   5 aiqqLreMGfsreeakkALratnnnvErAveyL 37 
                  a+ +L+eMGfsre++++AL  ++++++ Av+ L
  MMETSP0890-20130614|26992_1 158 ALTRLLEMGFSREQCIDALAQAGGDENDAVNRL 190
                  789***************************987 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.4e-06     0.011      50      92 ..      47      92 ..       4     109 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.4e-06
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxx RF
   PF05773.17 50 sleleirlpedYPeeaPiit.lsstelsl..kelrkrleekleela 92
                 ++++ i++p++YP e+P+++ l++ ++     ++ + + + l++++
  MMETSP0890-20130614|26992_1 47 TYKISIQIPKGYPFEPPKMKfLTKIWHPNisSQTGAICLDILKDQW 92
                 78999**************944444444455444444555555555 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.6e-06     0.019      25      99 ..      21      94 ..       2     117 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.6e-06
                 ----EEEEEEEE--EE....--------EE-EEEE--TTTTTS--EEEE-GCC--TSGGGGGB-----B--HHHH.S--T CS
    PF05743.8 25 edgesklllnlkGtip....veykgatyniPiliwvpesyPveaPivyvkptksmvikknenvdaqGrvylpyLe.eWkr 99
                  + +s +l +l+Gti+    + y+g ty+  i i++p+ yP+e+P +        +i + +   + G + l++L+ +W++
  MMETSP0890-20130614|26992_1 21 VELKSDDLQELQGTIKgpegTPYEGGTYK--ISIQIPKGYPFEPPKMKF----LTKIWHPNISSQTGAICLDILKdQWSP 94
                 55567788899999963333567777777..57789*********7643....234555555566788888887524655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.74
# Mc/sec: 625.00
//
Query:       MMETSP0890-20130614|26995_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   24.4   0.0    3.4e-05   23.1   0.0    1.7  2  PF00179.21 Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.071   12.9   0.0       0.17   11.6   0.0    1.4  1  PF05773.17 RWD domain


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.27   1.8e+03       7      34 ..      69      99 ..      63     106 .. 0.68
   2 !   23.1   0.0   4.9e-09   3.4e-05      48     107 ..     129     195 ..     124     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.27
                 H....HHHHS-TTCEEEEEEETTECCEEEEEE CS
   PF00179.21  7 k....elskkkpegikaevvedsnllewkvvi 34
                 +    ++ +++p++++ e+v+d + + w++ +
  MMETSP0890-20130614|26995_1 69 RslrkDWGEERPRIFDLEMVND-QSDWWRLKV 99
                 4444578889999999999997.666666555 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4.9e-09
                  EEEEE--TTTTTS--EEEESS...--SCTTB-----B-HGGGSTTT....--TT--HHHHHHHHHHH CS
   PF00179.21  48 klkikfpeeYPfkPPkvkfvt...kifHPnvdetGeicldiLkeek....WspaltlesvLlsiqsl 107
                   ++ikfp++YP kP  +++++     +  ++ + G ic++ L ++     W  ++ +e +L  +   
  MMETSP0890-20130614|26995_1 129 VMEIKFPKDYPTKPFFLRLISprmCWYTGHITAGGAICIEALTTSGtpgsWHRTHCVEGILRTVFTN 195
                  589****************9855455789**************6657888**********9966543 PP

>> PF05773.17  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05      0.17      30      71 ..     110     148 ..      81     153 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.5e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF05773.17  30 ttltiklkllltesessklpsleleirlpedYPeeaPiitls 71 
                  ++l+++l    t  +++ +  +++ei++p+dYP+++  ++l 
  MMETSP0890-20130614|26995_1 110 RNLNTDL---ATLGRTKGQDYIVMEIKFPKDYPTKPFFLRLI 148
                  4444444...4444555555899**********999777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 981.73
//
Query:       MMETSP0890-20130614|26994_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-60  203.8   0.1    5.2e-60  202.5   0.1    1.5  2  PF00398.15 Ribosomal RNA adenine dimethylase
    1.8e-11   43.9   0.2    3.6e-11   42.9   0.0    1.9  2  PF13659.1  Methyltransferase domain
    5.3e-09   36.5   0.0      1e-08   35.5   0.0    1.6  1  PF12847.2  Methyltransferase domain
    1.8e-06   28.2   0.0    3.8e-06   27.1   0.0    1.6  1  PF08241.7  Methyltransferase domain
    2.3e-06   26.9   0.0    5.6e-06   25.7   0.0    1.6  1  PF05175.9  Methyltransferase small domain
    2.5e-06   27.0   0.0      4e-06   26.3   0.0    1.3  1  PF13847.1  Methyltransferase domain
    2.9e-06   26.8   0.0    4.6e-06   26.1   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    9.5e-05   22.6   0.0    0.00027   21.2   0.0    1.8  1  PF08242.7  Methyltransferase domain
    0.00025   20.5   0.0    0.00073   19.0   0.0    1.7  2  PF01170.13 Putative RNA methylase family UPF0020
    0.00049   20.3   0.0    0.00099   19.3   0.0    1.6  1  PF13649.1  Methyltransferase domain
     0.0005   19.1   0.0      0.001   18.1   0.0    1.4  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0006   18.8   0.0     0.0011   18.0   0.0    1.4  1  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0052   15.7   0.0     0.0088   14.9   0.0    1.3  1  PF02390.12 Putative methyltransferase
     0.0081   15.7   0.0      0.013   15.1   0.0    1.4  1  PF13489.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.029   13.9   0.0    1.4  1  PF13679.1  Methyltransferase domain
       0.05   12.3   0.0       0.11   11.2   0.0    1.5  2  PF05219.7  DREV methyltransferase
      0.052   12.8   0.0      0.083   12.1   0.0    1.3  1  PF05401.6  Nodulation protein S (NodS)
      0.086   11.7   0.0       0.15   11.0   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   0.1   6.8e-63   5.2e-60       4     250 ..      20     261 ..      18     271 .. 0.93
   2 ?   -0.6   0.0      0.65   4.9e+02     150     176 ..     262     288 ..     251     320 .. 0.70

  Alignments for each domain:
  == domain 1    score: 202.5 bits;  conditional E-value: 6.8e-63
   PF00398.15   4 arksygqnflvnkkvineIldklnlqekdtvlEigpGkGalTeeLakrakqvvalEidsklvkrlqkkla...kdenvevvhqDflkfstpedviheeflvvaniPynistplvkqllsesrfglvkmllvlqkevarkllarpgskkrsklsvlteaftdiklvakvpksifsPpPkVdsalvelerkdqdllpqkdlkkfeslvrklltlkrksLstslrsllpggevqalskrarindkalvkklsk 250
                  a++++gq+fl+n+++++ I++++ +q +dtvlE+gpG+G+lT++L   ak+vva+E d+++v+ +qk+++    +++++vv++D+lk  +p+       ++van+Py+is++++++ll  + f +++++++lq+e+a +l a+pg + +++lsv t++   ++ + kv++++f+PpPkVds +v+++ ++ +  p  +  +++ l+++++ +k+k+L++++++++  + +q++s + +  ++++++k + 
  MMETSP0890-20130614|26994_1  20 ANTDLGQHFLKNPAIVDAIVERSAVQATDTVLEVGPGTGNLTVKLLAVAKKVVAIEYDRRMVREVQKRVEddpRKHRLQVVQGDVLKSPLPYFD-----VCVANLPYQISSAFLFKLLAHRPF-FRSAVIMLQEEFAARLSAKPGESLYCRLSVNTQILARVEQLIKVGRNNFRPPPKVDSRVVRITVRNPP--PPINFLEWDGLIKIAFSRKNKTLRAVFTTKTVLADLQSASLTWQALQQTKLGKTTT 261
                  6899******************************************************************999999***************944.....89*****************86666.8*****************************************************************98..6888999************************9999999998877777777776554 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.65
   PF00398.15 150 sklsvlteaftdiklvakvpksifsPp 176
                  ++  ++ ++++d +l++++++si sP 
  MMETSP0890-20130614|26994_1 262 QSAKIFDKTTIDNTLLKESDSSISSPG 288
                  556678888999999999999999886 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   4.8e-14   3.6e-11       2      83 ..      48     124 ..      47     255 .. 0.90
   2 ?   -2.9   0.0       7.8   5.9e+03      25      42 ..     307     324 ..     294     328 .. 0.74

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 4.8e-14
    PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpr 83 
                  d+vl++g G+G++++ +l+ + ++++++E d+r ++  +++++  ++++r++v+qgd+++ +     + fd++v+n Py  +
  MMETSP0890-20130614|26994_1  48 DTVLEVGPGTGNLTVKLLAVA-KKVVAIEYDRRMVREVQKRVEDDPRKHRLQVVQGDVLKSP----LPYFDVCVANLPYQIS 124
                  79*****************99.************************************7766....58***********743 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 7.8
    PF13659.1  25 lllgvEldpraaalaarn 42 
                  ++  +++d + a laa+n
  MMETSP0890-20130614|26994_1 307 RAAKMDIDDFLALLAAFN 324
                  555578999998888877 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.4e-11     1e-08       2      79 ..      47     121 ..      46     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.4e-11
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsllerfDavllkg.l 79 
                  ++++l++G GtG+l++ l+      kvv++++++ +++  ++++++  + +r++++qgd+   +s l+ fD+ +++  +
  MMETSP0890-20130614|26994_1  47 TDTVLEVGPGTGNLTVKLLA--VAKKVVAIEYDRRMVREVQKRVEDDPRKHRLQVVQGDV--LKSPLPYFDVCVANLpY 121
                  678*****************..9*********************889999**********..77777779998776544 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.1e-09   3.8e-06       1      68 [.      51     119 ..      51     136 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.1e-09
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeelpfednsfDvvvsse 68 
                  L+vG Gtg+l+ +l    a++v++++++ +m+++ ++r +++  +    +v++d+ + p++  +fDv+v++ 
  MMETSP0890-20130614|26994_1  51 LEVGPGTGNLTVKLLAV-AKKVVAIEYDRRMVREVQKRVEDDPRKhrlqVVQGDVLKSPLP--YFDVCVANL 119
                  89***************.**********************999989999***********9..*****9986 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.3e-09   5.6e-06      31     114 ..      46     127 ..      34     151 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7.3e-09
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..--EEE-STTTT--.--BS-EEE--------HH CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.vevlasdlleeveekkfdlivsNPPfhagkat 114
                   +++vl++G G+G l+++l++  ++  v++++ ++r v+  ++ +e+   ++ ++v++ d+l+      fd+ v N P +   a 
  MMETSP0890-20130614|26994_1  46 ATDTVLEVGPGTGNLTVKLLAVAKK--VVAIEYDRRMVREVQKRVEDDPRKHrLQVVQGDVLKSPL-PYFDVCVANLPYQISSAF 127
                  5678*****************9999..********************999999**********999.9**********7666543 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   5.2e-09     4e-06       3     108 ..      46     163 ..      44     193 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 5.2e-09
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklleesfDlvisnevl.naladpqkvlk................eiervlkpggrliv 108
                   + +vl++G GtG l+ +l       +kvv i+++  ++   ++r+++   + ++++ qgd+ + +  l+  fD+ ++n ++   +a++ k l                  ++   kpg  l++
  MMETSP0890-20130614|26994_1  46 ATDTVLEVGPGTGNLTVKLLAV---AKKVVAIEYDRRMVREVQKRVEDDPRKhRLQVVQGDVLKSP--LP-YFDVCVANLPYqISSAFLFKLLAhrpffrsavimlqeefAARLSAKPGESLYC 163
                  5789***************943...689************************************99..75.8*******766522333333332233333333334455444444555544444 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.1e-09   4.6e-06      57     132 ..      30     103 ..      17     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6.1e-09
                  --HHHHHHHHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--.SEEEE--- CS
   PF01135.14  57 SaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgD 132
                   +p +v +++e   +++ + vLevG G+G lt+ l  + +   +vv+ie+ +++v+e +++++ + ++ +++vv gD
  MMETSP0890-20130614|26994_1  30 KNPAIVDAIVERSAVQATDTVLEVGPGTGNLTVKLLAVAK---KVVAIEYDRRMVREVQKRVEDDPRKhRLQVVQGD 103
                  567888888888899*****************98776654...578*****************9987769****999 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.5e-07   0.00027       1      73 [.      51     118 ..      51     130 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.5e-07
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvas 73 
                  Le+G GtG+l+  ll+     ++++++++++++ + ++++ + ++++  ++++ + d+l++  + +fDv va+
  MMETSP0890-20130614|26994_1  51 LEVGPGTGNLTVKLLAV--AKKVVAIEYDRRMVREVQKRVEDDPRKH--RLQVVQGDVLKSPLP-YFDVCVAN 118
                  8****************..**************99999999999766..999999999999888.***99875 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.6e-07   0.00073      14     119 ..      32     124 ..      24     127 .. 0.91
   2 ?   -3.1   0.0       5.8   4.4e+03      67      85 ..     244     262 ..     220     283 .. 0.52

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 9.6e-07
   PF01170.13  14 etLAaalvnlagvkegdpllDPmcGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdkiefvkadaaklellegevdvivtnpPYGer 119
                  + +  a+v+++ v+ +d++l+   G+G + +    +++k++           +++ d+r+v+  ++  e    +++ ++v++d+ k + l   +dv v+n+PY ++
  MMETSP0890-20130614|26994_1  32 PAIVDAIVERSAVQATDTVLEVGPGTGNLTVKLLAVAKKVV-----------AIEYDRRMVREVQKRVEDDPRKHRLQVVQGDVLKSP-LP-YFDVCVANLPYQIS 124
                  67889999999*******99999999999998888888887...........9**********************************9.55.5**********765 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 5.8
   PF01170.13  67 lDidervvqgakeNaeeag 85 
                  + + ++++q++k     ++
  MMETSP0890-20130614|26994_1 244 ASLTWQALQQTKLGKTTTQ 262
                  3334444444444444433 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-06   0.00099       1      70 [.      50     114 ..      50     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-06
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss..kglkvkfvqadaralpfeegefdl 70 
                  +l++G G+G+ + +l   +     ++v++++++ ++++++++r+++  ++++ ++vq+d+ + p +   fd+
  MMETSP0890-20130614|26994_1  50 VLEVGPGTGNLTVKLLAVA-----KKVVAIEYDRRMVREVQKRVEDdpRKHRLQVVQGDVLKSPLPY--FDV 114
                  79********999998664.....9*******************98665569999****98866433..444 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06     0.001     158     233 ..      43     119 ..      35     133 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-06
    PF06325.8 158 lvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevallkelpk...ekadvivaNI 233
                   v+++++vl vG G+G L++  +   akkvva+ +D   v+  ++ +e    +++l+v ++ +++k     +dv vaN 
  MMETSP0890-20130614|26994_1  43 AVQATDTVLEVGPGTGNLTVKLLA-VAKKVVAIEYDRRMVREVQKRVEDDPRKHRLQV-VQGDVLKsplPYFDVCVANL 119
                  589999************997554.589****************************98.6677777565678******6 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.5e-06    0.0011      38     109 ..      37     106 ..      21     117 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.5e-06
   PF01209.13  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaee 109
                   + +++av+   +vl+v  Gtg+l++kl+  ++   kvv ++++  m+++ +k+++++  + +++ +q++  +
  MMETSP0890-20130614|26994_1  37 AIVERSAVQATDTVLEVGPGTGNLTVKLLAVAK---KVVAIEYDRRMVREVQKRVEDDPRKhRLQVVQGDVLK 106
                  566778899999****************98876...79999***************99876689988887655 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05    0.0088      21      78 ..      44     104 ..      21     113 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.2e-05
                  -....EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH.--TTB------H CS
   PF02390.12  21 k....lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkieal.glkNlrilegda 78 
                       +vle+G G G+++v+l +    k++++iE  +++v++v+k++e+  + + l++++gd 
  MMETSP0890-20130614|26994_1  44 VqatdTVLEVGPGTGNLTVKLLA--VAKKVVAIEYDRRMVREVQKRVEDDpRKHRLQVVQGDV 104
                  133448**************955..56899******************998888889988886 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-05     0.013      20      60 ..      44      91 ..      24     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.7e-05
    PF13489.1 20 lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.......a 60
                  ++  +vL++G+GtG+l+  l +   +v++++ ++ ++ +       +
  MMETSP0890-20130614|26994_1 44 VQATDTVLEVGPGTGNLTVKLLAVAKKVVAIEYDRRMVREvqkrvedD 91
                 456679*************9999999*******999887643333330 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.8e-05     0.029      11      91 ..      33     104 ..      28     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.8e-05
    PF13679.1  11 elveklvkeaakeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegti 91 
                  ++v+++v++ ++ +++ tv++vG G g L+  l +         kvv+i+ ++++v++ +++ e+     +++l+ ++g++
  MMETSP0890-20130614|26994_1  33 AIVDAIVER-SAVQATDTVLEVGPGTGNLTVKLLA------VAKKVVAIEYDRRMVREVQKRVEDDP--RKHRLQVVQGDV 104
                  578888888.5778899****************99......6899**********999999877666..334666666655 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.11      90     135 ..      42      87 ..      12      90 .. 0.87
   2 ?   -3.0   0.0         3   2.3e+03     144     176 ..     250     282 ..     232     312 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    PF05219.7  90 asdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135
                  ++ q + ++l++G G G++t ++    ++v a e   +m   ++k+
  MMETSP0890-20130614|26994_1  42 SAVQATDTVLEVGPGTGNLTVKLLAVAKKVVAIEYDRRMVREVQKR 87 
                  4457899*********************************999985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3
    PF05219.7 144 elqetdvkldlilclnlldrcfdplklledirs 176
                   lq+t++      +  ++d+     +ll++  s
  MMETSP0890-20130614|26994_1 250 ALQQTKLGKTTTQSAKIFDKTTIDNTLLKESDS 282
                  444454444445555555555555555555555 PP

>> PF05401.6  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011     0.083      44      90 ..      47      93 ..      35     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
                 B----EE------HHHHHGGGBSSEEEEES-TTT---HHHHTTT-SS CS
    PF05401.6 44 vanalevGcaaGafteklapyckrltvidvvpeaierarervkkssh 90
                    +levG  +G +t kl   +k++  i+   + +   ++rv++ + 
  MMETSP0890-20130614|26994_1 47 TDTVLEVGPGTGNLTVKLLAVAKKVVAIEYDRRMVREVQKRVEDDPR 93
                 4568**************************************97543 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.15      51     116 ..      35      99 ..      31     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
                  HHHHHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B-- CS
   PF02353.15  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvev 116
                  +d i+e+  +++ +t+L++G G G+l+++  +    kvv++   +   + +++rv++   +++ +v
  MMETSP0890-20130614|26994_1  35 VDAIVERSAVQATDTVLEVGPGTGNLTVKLLAV-AKKVVAIEYDRRMVREVQKRVEDDPRKHRLQV 99 
                  6889999*******************9987666.669******9999999**99998887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.65
# Mc/sec: 1220.30
//
Query:       MMETSP0890-20130614|26993_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.77
# Mc/sec: 1416.03
//
Query:       MMETSP0890-20130614|26997_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.9   0.0    3.8e-06   27.0   0.0    2.5  2  PF12796.2  Ankyrin repeats (3 copies)
    9.3e-12   44.0   3.9     0.0075   15.9   0.0    4.3  4  PF00023.25 Ankyrin repeat
    1.6e-09   37.8   0.4     0.0038   17.6   0.0    3.6  3  PF13637.1  Ankyrin repeats (many copies)
      3e-08   33.5   0.4    0.00011   22.1   0.2    2.9  2  PF13857.1  Ankyrin repeats (many copies)
    2.1e-07   30.5  17.4    9.4e-07   28.4  12.2    2.1  2  PF01753.13 MYND finger
    9.2e-07   28.4   1.5       0.41   10.9   0.0    4.5  4  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.7e-09   3.8e-06      39      89 .]     371     425 ..     307     425 .. 0.73
   2 !   26.5   0.0   2.3e-09   5.3e-06      38      89 .]     406     458 ..     401     458 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.7e-09
    PF12796.2  39 leivklLleagadvnakdkegntpLhlAvrnghlelv...klLlek.gadvnlrd 89 
                  +++++lLle+ga++na+d  g++ Lh+   +++  ++    lL+++ gad+n+r+
  MMETSP0890-20130614|26997_1 371 VATCRLLLEHGANPNARDVAGYSLLHHVSNSENDHCLsmcSLLCSEfGADPNIRN 425
                  489*************************9977765553338888556*****997 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 2.3e-09
    PF12796.2  38 nleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                  +l +++lL++  gad+n ++  g  pL   v ++h++++k+Lle+gad++l+d
  MMETSP0890-20130614|26997_1 406 CLSMCSLLCSeFGADPNIRNRFGTVPLRDIVLQNHVKMAKILLEHGADPSLED 458
                  578999999868*************************************9986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   3.2e+03       4      13 ..      62      71 ..      61      74 .. 0.82
   2 !   15.9   0.0   3.3e-06    0.0075      13      32 ..     352     388 ..     341     389 .. 0.68
   3 !   12.4   0.1   4.2e-05     0.096       2      32 ..     391     425 ..     390     426 .. 0.92
   4 !   14.1   0.0   1.2e-05     0.028      10      32 ..     436     458 ..     429     459 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.4
                 BHHHHHHHTT CS
   PF00023.25  4 TPLHlAalrg 13
                 T+L+  al+ 
  MMETSP0890-20130614|26997_1 62 TCLMHSALCS 71
                 9****99996 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.3e-06
                  T.................HHHHHHHHHHTTSSTTHBH CS
   PF00023.25  13 g.................nlevvklLlsqGAdlnaqd 32 
                                     +  ++lLl++GA++na+d
  MMETSP0890-20130614|26997_1 352 AmcikagpnlsretpgmeWVATCRLLLEHGANPNARD 388
                  35555555555555555556789*************9 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 4.2e-05
                  SCBHHHHHHHTT...HHHHHHHHHH.TTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrg...nlevvklLls.qGAdlnaqd 32 
                  G++ LH  + +    +l++++lL s  GAd+n+++
  MMETSP0890-20130614|26997_1 391 GYSLLHHVSNSEndhCLSMCSLLCSeFGADPNIRN 425
                  788899999999999*******************9 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 1.2e-05
                  HHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25  10 alrgnlevvklLlsqGAdlnaqd 32 
                  +l ++++++k Ll++GAd+ + d
  MMETSP0890-20130614|26997_1 436 VLQNHVKMAKILLEHGADPSLED 458
                  6789***************9876 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06    0.0038      13      41 ..     370     398 ..     360     403 .. 0.91
   2 !   14.0   0.1   2.2e-05      0.05      11      54 .]     404     448 ..     400     448 .. 0.91
   3 !    8.5   0.0    0.0011       2.5       6      27 ..     433     454 ..     431     462 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.6e-06
    PF13637.1  13 rlelvklLlekgidinrtdesGntaLhiA 41 
                  ++ +++lLle+g+++n++d  G ++Lh +
  MMETSP0890-20130614|26997_1 370 WVATCRLLLEHGANPNARDVAGYSLLHHV 398
                  5779***********************75 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.2e-05
    PF13637.1  11 sgrlelvklLl.ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  +++l ++ lL+ e+g+d+n ++++G+ +L   +l ++++++k Ll
  MMETSP0890-20130614|26997_1 404 DHCLSMCSLLCsEFGADPNIRNRFGTVPLRDIVLQNHVKMAKILL 448
                  67899999999678****************************997 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0011
    PF13637.1   6 hyaaisgrlelvklLlekgidi 27 
                  +  + +++++++k Lle+g+d+
  MMETSP0890-20130614|26997_1 433 RDIVLQNHVKMAKILLEHGADP 454
                  5556789**************8 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   4.9e-08   0.00011       1      53 [.     377     432 ..     377     433 .. 0.89
   2 !   18.0   0.0   9.4e-07    0.0022       5      47 ..     418     459 ..     413     462 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.9e-08
    PF13857.1   1 LlehgpadvnatdeggntpLhlAak...ggalevvrlLl.apgadlnlrdsdgltal 53 
                  Llehg a++na+d +g+++Lh   +    ++l+++ lL+ ++gad+n+r+ +g  +l
  MMETSP0890-20130614|26997_1 377 LLEHG-ANPNARDVAGYSLLHHVSNsenDHCLSMCSLLCsEFGADPNIRNRFGTVPL 432
                  9****.****************98641357899999999************998776 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 9.4e-07
    PF13857.1   5 gpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrds 47 
                  g ad+n ++++g+ pL   + ++++ ++++Ll++gad+ l d+
  MMETSP0890-20130614|26997_1 418 G-ADPNIRNRFGTVPLRDIVLQNHVKMAKILLEHGADPSLEDT 459
                  5.9***********************************99886 PP

>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3         1   2.3e+03      21      26 ..     510     515 ..     508     518 .. 0.83
   2 !   28.4  12.2   4.1e-10   9.4e-07       3      40 .]     517     551 ..     511     551 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1
                  -EESSH CS
   PF01753.13  21 vkYCsk 26 
                  ++YCs+
  MMETSP0890-20130614|26997_1 510 IFYCSN 515
                  79**96 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 4.1e-10
                  TT--.B----EE----S--EESSHHHHHHHHHHHTTTH CS
   PF01753.13   3 vCgkaealkllrCsgCksvkYCskeCQradwkeHkkeC 40 
                   C + +a k   C+gC++++YCs eCQr++  +Hk+eC
  MMETSP0890-20130614|26997_1 517 GCTN-RADK--VCKGCRRAWYCSIECQRNHYATHKSEC 551
                  4777.9999..*************************** PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.2   1.2e+04       3      12 ..      61      70 ..      61      76 .. 0.67
   2 !    6.1   0.0    0.0062        14      16      30 .]     372     386 ..     341     386 .. 0.83
   3 !    7.2   0.1    0.0027       6.2       2      30 .]     391     423 ..     390     423 .. 0.76
   4 !   10.9   0.0   0.00018      0.41      11      29 ..     437     455 ..     431     456 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.2
    PF13606.1  3 nTpLhlAasn 12
                 +T+L++ a +
  MMETSP0890-20130614|26997_1 61 ETCLMHSALC 70
                 5899887653 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0062
    PF13606.1  16 elveaLlengadina 30 
                  + +++Lle+ga++na
  MMETSP0890-20130614|26997_1 372 ATCRLLLEHGANPNA 386
                  5789*********96 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0027
    PF13606.1   2 GnTpLhlAasngr...ielveaLle.ngadina 30 
                  G+++Lh++  + +   ++++++L++  gad+n+
  MMETSP0890-20130614|26997_1 391 GYSLLHHVSNSENdhcLSMCSLLCSeFGADPNI 423
                  899*****665432347*******6379***96 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00018
    PF13606.1  11 sngrielveaLlengadin 29 
                   +++++++++Lle+gad++
  MMETSP0890-20130614|26997_1 437 LQNHVKMAKILLEHGADPS 455
                  689**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:00.92
# Mc/sec: 1841.55
//
Query:       MMETSP0890-20130614|26998_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-48  163.0   0.0    2.5e-48  162.9   0.0    1.0  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   1.8e-52   2.5e-48       2     138 ..      10     159 ..       9     161 .. 0.94

  Alignments for each domain:
  == domain 1    score: 162.9 bits;  conditional E-value: 1.8e-52
                  HHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGS..........TTT....--TT--HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
   PF00179.21   2 lqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLk..........eek....WspaltlesvLlsiqsllaepnpesplnkeaakllkknreeykkkvke 138
                  l+++l+e+s+++pegi++++ ++sn++ew++++ gp++t++egg+Fk+k++fp+++P++PP+++f+tk++HPn++++G++c++iL+          e +    W+p+l +es+L+s++s+l++pn++sp+n++aa ++++ ++e+kk+v++
  MMETSP0890-20130614|26998_1  10 LKRQLSEMSRNPPEGISVGLFDESNIYEWQIMLVGPPETLFEGGFFKAKLEFPTSFPNQPPTMTFITKMWHPNIYPDGRVCISILHspgddptneqE-TadlrWRPVLGVESILISVISMLSDPNDSSPANIDAAVMWRERPDEFKKRVRA 159
                  789999********************************************************************************99999987650.15566*********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 674.97
//
Query:       MMETSP0890-20130614|26999_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:01.12
# Mc/sec: 905.05
//
Query:       MMETSP0890-20130614|27000_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-12   44.5   0.0    1.3e-11   43.8   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.7e-11   43.8   0.0    2.9e-11   43.0   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    1.8e-05   24.3   0.0    2.7e-05   23.8   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
        5.8    6.2   7.3        9.4    5.5   5.0    1.2  1  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   3.7e-15   1.3e-11       2      70 .]      76     144 ..      75     144 .. 0.95

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 3.7e-15
                  EEESSTTTSSHHHHHHHHCTCT.CEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   2 fVgnLppdvteeeLkelFskfG.piesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  +VgnL++d+ e+++  +F+k G ++ ++++v  ++g+ kgfa+Ve  + ++ ++Al++++g++  gr+lk
  MMETSP0890-20130614|27000_1  76 YVGNLSYDARENDVFNVFEKSGcRVHEVRMVE-RDGSFKGFAYVELSDADSLQRALSEMQGQMHLGRPLK 144
                  9*******************885789******.8*****************************9999985 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   8.5e-15   2.9e-11       2      62 ..      76     137 ..      75     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 8.5e-15
    PF14259.1   2 yvrglppsvteedlreffspyg.kvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lv 62 
                  yv++l++++ e d+++ f++ g +v++vr++  +dg ++gfA+ve++++++ q+al  ++ ++
  MMETSP0890-20130614|27000_1  76 YVGNLSYDARENDVFNVFEKSGcRVHEVRMVE-RDGSFKGFAYVELSDADSLQRALSEMQgQM 137
                  8*******************9758*******5.46*********************9987433 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.9e-09   2.7e-05       2      56 .]      90     148 ..      89     148 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 7.9e-09
    PF13893.1   2 yklfskfG.kverikifrkk...ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  ++ f+k G +v ++++ +     +g+A+ve +++++ ++a++ ++g+   g++Lk +++
  MMETSP0890-20130614|27000_1  90 FNVFEKSGcRVHEVRMVERDgsfKGFAYVELSDADSLQRALSEMQGQMHLGRPLKLDVA 148
                  7899999989******77777999*******************************9876 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.0    0.0028       9.4      52      93 ..     267     308 ..     266     338 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0028
   PF01988.14  52 eylsvkaerdleeaelereqqeverspegeveeladilkakg 93 
                  eyl +k +r++ e+e ++ ++ +++++++e+eel+  lk++ 
  MMETSP0890-20130614|27000_1 267 EYLEQKKQREKKEEEERKRKELIAQQQHKEKEELETKLKEQQ 308
                  8*********************************99999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1354  (0.0990345); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.20u 0.40s 00:00:01.60 Elapsed: 00:00:01.17
# Mc/sec: 1110.11
//
Query:       MMETSP0890-20130614|27004_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  132.4   0.0    1.4e-38  132.0   0.0    1.1  1  PF04414.7 D-aminoacyl-tRNA deacylase


Domain annotation for each model (and alignments):
>> PF04414.7  D-aminoacyl-tRNA deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0     1e-42   1.4e-38       6     207 ..      99     348 ..      94     354 .. 0.84

  Alignments for each domain:
  == domain 1    score: 132.0 bits;  conditional E-value: 1e-42
                  HHH.....TT---SEEEEEEE--------EEEEE-------..------TT----B-HHHHHHHHHHHHGGGG........GT..-EEEE--S--------S-EEEEEE---HHHHT-HHHHHHHHHHHHHHHH------................EEEE-----TT-HHHHHHHHHB.SEE------GGGGGG--............HHHHHHHHHHH.....T-SE.EEE-TTT--HHHHHHHHHHHHH- CS
    PF04414.7   6 lde.....teedvdlivflSrHsseskrplLTvHttGnfge..aelGGepeelavaaprllkallralkklae........eg..fevtlEatHHgPtelkvpslFvEiGSteeeWkdkdaaeavaeavlealekeeeeev..............ekklvgiGGgHYaprftkivlks.eiavGhiipkyalaels............ekvieqaveks.....eaea.alidrkslkseerkeieelleel 207
                  +d+      + +++ +vflSrH+++s  p+L vH++G+  +  a++GG+ + + +++  +  +l+r+l+k+a+         g  f+ +lEatHHgP+ l++ps+FvEiGS++ +  +++ a   ae + +++ + +++++              ++ +v++GGgHY p++ +++  + ++ +Gh++++y++++++            +++i+ a+ ++     ++++ + +++k+++s  r+ei ++++++
  MMETSP0890-20130614|27004_1  99 IDKkfenwFGVKPSDVVFLSRHTAASALPALCVHPIGVAADaeASHGGRSGVMVPPSSYI-APLYRELRKRAKilslqcdaTGsaFQTCLEATHHGPV-LSTPSCFVEIGSSDLQYDQNQPAYLWAEILNDLIINPQDKKFsshwthfaqdvqqdKTIIVVLGGGHYMPKIGDLCAADdSVFLGHMLASYNFKNIEstsadnyeppawHQTIRAAIDATrqsypGVDVvIRLEKKAFRSAARTEIFNFVSQN 348
                  555445556678999************************954599******999999999.99*********9887776551155*************.*******************999988888888888888888778888********9999999*************9876516789**********988899999999999555555555554448878887889*************9998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1218.72
//
Query:       MMETSP0890-20130614|27034_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-11   43.6   0.0    2.5e-11   43.2   0.0    1.3  1  PF05891.7  AdoMet dependent proline di-methyltransferase
  ------ inclusion threshold ------
      0.031   14.2   0.2      0.081   12.8   0.0    1.7  2  PF07761.7  Protein of unknown function (DUF1617)
       0.12   11.4   0.0       0.19   10.7   0.0    1.3  1  PF00891.13 O-methyltransferase


Domain annotation for each model (and alignments):
>> PF05891.7  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   5.4e-15   2.5e-11     133     202 ..       1      77 [.       1      99 [. 0.84

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 5.4e-15
    PF05891.7 133 ghLtDedlvaflkrckkalkpnGlivvkenv.....akeekd..elDkeDssvtrseaklkklfkkagLklvaeelq 202
                  gh+tD d+++fl  c  al  nG++ +k+nv     a+ + d   +D++D s++rs ++l+ +f   g++++ae +q
  MMETSP0890-20130614|27034_1   1 GHFTDLDFIQFLYTCRDALTSNGILFIKDNVlgtreAEPQDDafYVDEDDYSICRSYNYLRTVFDLVGVTILAECQQ 77 
                  8*****************************8443222222331156*************************999887 PP

>> PF07761.7  Protein of unknown function (DUF1617)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05     0.081     108     136 ..       6      35 ..       2      42 .. 0.86
   2 ?   -0.4   0.0       0.2   9.3e+02      58      74 ..      37      53 ..      30      76 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.8e-05
    PF07761.7 108 idfleylvesedeftseeivli.dnileqf 136
                  +df+++l  + d +ts+ i++i dn+l   
  MMETSP0890-20130614|27034_1   6 LDFIQFLYTCRDALTSNGILFIkDNVLGTR 35 
                  79*****************99868998655 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.2
    PF07761.7 58 akddddkfvidekknik 74
                 a  +dd f +de +   
  MMETSP0890-20130614|27034_1 37 AEPQDDAFYVDEDDYSI 53
                 66678888888776544 PP

>> PF00891.13  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.3e-05      0.19     171     212 ..       3      42 ..       2      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.3e-05
                  S-HHHHHHHHHHHCCTB---..--EEEEEE-B-GGG--CHHH CS
   PF00891.13 171 WsdedcvkiLkrcreAlppgkkGkvivveavlpeeeddsees 212
                  ++d d +++L  cr+Al+   +G + + + vl + e+++++ 
  MMETSP0890-20130614|27034_1   3 FTDLDFIQFLYTCRDALT--SNGILFIKDNVLGTREAEPQDD 42 
                  78999*************..67**********9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.34s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 499.24
//
Query:       MMETSP0890-20130614|27031_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-42  145.7  22.6    1.5e-42  145.4  15.7    1.1  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4  15.7   1.1e-46   1.5e-42       2     409 ..       2     395 ..       1     396 [] 0.88

  Alignments for each domain:
  == domain 1    score: 145.4 bits;  conditional E-value: 1.1e-46
   PF01490.13   2 tssalsavlnlikaivGaGvLaLPy...AfkqlG....llvGlillllvalislytlllLvkcsktlavkgkrnksYgdlvyrllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdtlhisnvyfilisaliiipLslirnlsaLsylSllaavsslyyivilvlvvaelvklelqgvseeav.kkasklkglflaigiivFAfeghavllpiqnelkd.pskfkkmtkvlllsiilvtvlyilvGlvGYltFGnevkgnillnlpkssilivivnvllvlalllsfplqlhplrevvenvlirkeavagasekkapkskllrlvirlllvvityliAlsvpslakvlslvGatsstslsfilPalfhlkliktekksleklilkkildlicivvglllvvyglavli 409
                  t+s++s++lnl+k+ivGaGvLaLP    Af++ G    +++  il+++ +++s y++ lL ++       g   +sY+++ +r++G+   +i+  +++v+ ++++++y i+ gd++ a+f+         +  f++  +++++pL+ +++l+aL+ +S l++  +ly  vi++   a ++++     +  ++    + + glf  ig++  A+  h + ++++ +  +  s    ++k++ + ++l++++ ilv ++G+ltFG + +g +l+n+  ++ l +i+++l+++ +l++fpl+++ + + + ++ ++            p+s+ +r+v  ++ ++++++iAl+    ++v+sl+Ga+ ++  ++ilPal+  k+ + +k ++e+  l      ++i++g++ +v+g++ +i
  MMETSP0890-20130614|27031_1   2 TTSIMSGTLNLVKSIVGAGVLALPAgvaAFATQGqqvaIIPASILMIILGAASAYSFSLLGRLCG-----GAATDSYREAWARIVGKDTAWIVTTCCTVTPLFACLAYSIILGDSFAALFGHLVPAALDPRRFFVALCGIVLWPLCALKSLKALAPTSALGTAGILY-TVIFMGKRAVDGTYPTAAAAAATSsPLTLLNPGLFVLIGMLGTAYMAHFNAPSFYVDAGKdMSR---FNKIVRNGFTLSILTNILVMVTGFLTFGAASSGFVLNNYRANDLLANIARALFGTSILFTFPLAFFGAKDGLRQLDNKL---------LGPNSSEQRIV--SIPLALITAIALLLDDVGLVISLTGAIMGSAVIYILPALMLKKASNISKSRAEQNGLI---PNTMIITGIISAVLGVVTSI 395
                  799*********************64447999997777899**********************97.....789************************************************99887777999*********************************98.79999999999999888888888866677788**********************9777662455...559*******************************************************************999998765.........44444444443..566777899*******************************999999888877776433...34666677777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.79
# Mc/sec: 1201.21
//
Query:       MMETSP0890-20130614|27030_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-53  181.7   0.0    1.8e-53  181.3   0.0    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
    6.1e-07   28.5   0.1    7.6e-05   21.6   0.0    2.3  2  PF02719.10 Polysaccharide biosynthesis protein
      1e-06   27.7   0.0      4e-05   22.5   0.0    2.1  2  PF04321.12 RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.0   3.9e-57   1.8e-53       1     227 [.       6     231 ..       6     240 .. 0.96

  Alignments for each domain:
  == domain 1    score: 181.3 bits;  conditional E-value: 3.9e-57
                  EEEE--------HHHHHHHHH-TEEE.EESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---.HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS--.--SSH....HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT....-SHHCHHHHHHHHHH---S....EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
   PF01370.16   1 ilVtGatGfiGsalveallekgyevv.nlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesg.vdassedpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetpl.gplsp....YaaaKlageklveayaeeyglnaiilrlfnvyGpr.nfdeevshvipalirkilegee....vtllgdGtqlRdflyveDvaealllvlehgd 227
                  +lVtG+tG+ G+a+ +++++ + e   ++i  +++e             +dl d++++e++fa+ +p++ ihlAa++g   a++ ++ +f+++n+ ++ n++e++r ++v +++ + S++v++++++ pi+E++ + gp +     Ya+aK++++ + + ya+ey  ++++++++n++G+  nf+ ++ hvip li+k++ +++    +t++g+Gt+lR+f+y+ D+a++ ++vl+++d
  MMETSP0890-20130614|27030_1   6 VLVTGGTGLYGKAIERYVASDPLEADaKWIFLSSKE-------------GDLRDRKQTEAIFAKYKPTHCIHLAAMVGgLFANMAKKVEFYRENMLINDNVMECCRIYNVHKLVSCLSTCVFPDKTTYPIDETMIHaGPPHSsnegYAYAKRMIDVMNRCYADEYCAKFTSVIPTNIFGEFdNFSIQNGHVIPGLIHKCYLAKQnntsFTVWGSGTPLRQFIYSLDLAKLTVWVLREYD 231
                  79**********************8789***99999.............****************************************************************************************66666699*******************************************************99999********************************99 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0019       8.7       1      21 [.       6      26 ..       6      41 .. 0.78
   2 !   21.6   0.0   1.7e-08   7.6e-05      60     135 ..      41     122 ..      27     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0019
   PF02719.10  1 vlvtGagGsiGselvrqilkk 21
                 vlvtG++G +G+++ r +++ 
  MMETSP0890-20130614|27030_1  6 VLVTGGTGLYGKAIERYVASD 26
                 89**********998887654 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.7e-08
   PF02719.10  60 igdvrdkerleealeelkvdvvfhaAAlKhVPlvee.npleavktNvlgtenvieaaieagvekvv.liSt....DKAvnPt 135
                   gd+rd+++ e ++ ++k+  ++h AA+     +++ + +e  + N+l  +nv+e++  ++v+k+v ++St    DK  +P+
  MMETSP0890-20130614|27030_1  41 EGDLRDRKQTEAIFAKYKPTHCIHLAAMVGGLFANMaKKVEFYRENMLINDNVMECCRIYNVHKLVsCLSTcvfpDKTTYPI 122
                  59*************************97655555427899***********************996688877778888887 PP

>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.8e-09     4e-05       3     115 ..       6     124 ..       3     133 .. 0.81
   2 !    3.3   0.0    0.0063        29     185     239 ..     215     267 ..     208     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 8.8e-09
                  EEEE--------HHHHHH--....--EEEEE--TTT--TT-HHHHHHHHHHH--SEEEE------HHHHHH-.HHHHHHHHT---HHHHHHHHH---.EEEEEEEGGG-----SS-B-T CS
   PF04321.12   3 ilvtGanGqlGteLaralke....egvevvaldreeldltdpeavaalvkeakpdvvvnaAAytavdkaEse.eeeayavnaegpenlAeaaaavga.llihiSTdyVFdGekkrpYee 115
                  +lvtG++G  G ++ r +++    ++++ + l+++e dl d+++ +a++++ kp+  +++AA      a    + e y+ n     n+ e ++ +++ +l+   +  VF+ +++ p  e
  MMETSP0890-20130614|27030_1   6 VLVTGGTGLYGKAIERYVASdpleADAKWIFLSSKEGDLRDRKQTEAIFAKYKPTHCIHLAAMVGGLFANMAkKVEFYRENMLINDNVMECCRIYNVhKLVSCLSTCVFPDKTTYPIDE 124
                  89*************99986333368889999******************************987766666536677888888888999999888873477776777887776665555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0063
                  EHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH-----.EEE CS
   PF04321.12 185 saedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgadgeevk 239
                  +  dlA+ ++++l++  +  + + ++ +  + e+s  d+A +i++++++ + +v 
  MMETSP0890-20130614|27030_1 215 YSLDLAKLTVWVLREYDS--TDSIILSVDEKDEVSIKDVALMIADAMEFPRDRVV 267
                  6789***********998..557899999******************99886664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.98
# Mc/sec: 777.59
//
Query:       MMETSP0890-20130614|27046_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-06   26.1   0.7      4e-06   26.0   0.5    1.0  1  PF00294.19 pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.5   2.9e-10     4e-06     252     292 ..      18      58 ..       9      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.9e-10
                  B-TT---TTT--HHHHHHTT--HHHHHHHHHHHHHHHHT-- CS
   PF00294.19 252 DttGAGDafvagflagllagksleealrlanavaalvvqka 292
                  +++GAGD++++   a llag++  +a++++ +++a+++  +
  MMETSP0890-20130614|27046_1  18 SPIGAGDTVAGTTFARLLAGYDDLDAFAFGLSCGAASCLTS 58 
                  789**********************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.98
# Mc/sec: 161.39
//
Query:       MMETSP0890-20130614|27039_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.32   11.0   2.4          5    7.1   0.3    3.2  3  PF07864.6 Protein of unknown function (DUF1651)
        1.3    8.3   3.5        5.5    6.2   0.1    2.3  2  PF09989.4 CoA enzyme activase uncharacterised domain (DUF2229)


Domain annotation for each model (and alignments):
>> PF07864.6  Protein of unknown function (DUF1651)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.46   3.1e+03      28      57 ..      67      96 ..      58      98 .. 0.81
   2 ?    1.0   0.0     0.058     4e+02      22      50 ..     132     159 ..     119     162 .. 0.75
   3 ?    7.1   0.3   0.00073         5      56      69 ..     182     195 ..     180     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.46
    PF07864.6 28 vfvdtgrvvpngeppllktrrrlkreeAre 57
                  ++++++++ ++ p + ++ +++ +  A++
  MMETSP0890-20130614|27039_1 67 QELSYYKPRAKSGPTVWQRATVMAKAAAEK 96
                 567899999999999999999999998886 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.058
    PF07864.6  22 adqdpkvfvdtgrvvpngeppllktrrrl 50 
                   +++++ ++ t+   + g pp+l++r + 
  MMETSP0890-20130614|27039_1 132 SEYEKFLLTATWPSDQ-GIPPQLTKRLVE 159
                  4556667777776666.********9875 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00073
    PF07864.6  56 reeWkeLlsqGWrr 69 
                  r++Wk++ +q+Wr+
  MMETSP0890-20130614|27039_1 182 RKLWKKMVEQDWRT 195
                  689*********97 PP

>> PF09989.4  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.5     0.013        86     149     184 ..      90     125 ..      66     149 .. 0.81
   2 ?    6.2   0.1   0.00081       5.5     133     184 ..     383     434 ..     353     441 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.013
    PF09989.4 149 ikkAvekAleeqeefkedlkkkgeealelleeegkk 184
                  +k+A+ekA+e+ + + ++ k+ g ea +++++ ++ 
  MMETSP0890-20130614|27039_1  90 AKAAAEKAVEKSKVAADKAKEFGVEAAQRAQKAQRL 125
                  578999999999999999999999988888876654 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00081
    PF09989.4 133 krlvelgkklgiskeeikkAvekAleeqeefkedlkkkgeealelleeegkk 184
                    + ++ +k++  + ++ kA+++A+++++ f+++++++  +++  l+ee  +
  MMETSP0890-20130614|27039_1 383 SDVQKCLEKFNSLRPRLTKAAKAAVKSLRYFDNKVNTEFLSTDSVLDEETTQ 434
                  34444556677788999***********************999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1166  (0.0852838); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.86
# Mc/sec: 1354.22
//
Query:       MMETSP0890-20130614|27050_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-13   47.8  13.6     0.0022   17.6   0.4    7.2  7  PF07719.12 Tetratricopeptide repeat
    1.8e-11   43.7  15.4    6.1e-07   29.1   0.1    4.7  5  PF13424.1  Tetratricopeptide repeat
    5.3e-10   38.6  20.0     0.0017   17.8   0.9    5.6  6  PF13414.1  TPR repeat
    2.2e-07   31.2  53.1      0.024   15.1   1.3    6.8  7  PF13432.1  Tetratricopeptide repeat
    2.6e-07   29.8   0.6      0.044   13.2   0.3    4.2  4  PF00515.23 Tetratricopeptide repeat
    1.1e-06   27.8   9.6      0.071   12.8   0.1    6.0  6  PF13176.1  Tetratricopeptide repeat
    1.9e-06   27.8  44.3      0.075   13.6   2.2    9.3  9  PF13428.1  Tetratricopeptide repeat
    1.9e-05   23.9   0.0        0.8    9.5   0.0    3.9  4  PF13181.1  Tetratricopeptide repeat
     0.0077   16.2   6.7         41    4.6   0.0    6.2  7  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0068        10       3      33 ..      28      58 ..      26      59 .. 0.87
   2 ?   -1.9   0.2       2.6     4e+03      16      28 ..      76      88 ..      61      89 .. 0.69
   3 !   11.3   0.0   0.00016      0.24       2      28 ..     106     132 ..     105     133 .. 0.93
   4 !   14.0   0.0     2e-05      0.03       2      30 ..     146     174 ..     145     177 .. 0.90
   5 !   17.6   0.4   1.4e-06    0.0022       1      33 [.     420     452 ..     420     453 .. 0.96
   6 ?    0.6   0.0      0.42   6.4e+02       6      34 .]     459     487 ..     455     487 .. 0.84
   7 ?   -0.2   0.1      0.75   1.1e+03       1      18 [.     491     508 ..     491     509 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0068
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPn 33
                 +l   + ++++ gd ++ + +f+++ +l+P 
  MMETSP0890-20130614|27050_1 28 ILTTAAVVAAEVGDRQRSHTYFDQCHRLEPY 58
                 56677999999******************96 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.6
                 -HHHHHHHHHHHH CS
   PF07719.12 16 dyeeAleafekAl 28
                 d + A++a++k l
  MMETSP0890-20130614|27050_1 76 DVDAARRALRKGL 88
                 4488999988865 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00016
                  HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAl 28 
                   +++n+G + +++gdy  A+++f++ l
  MMETSP0890-20130614|27050_1 106 TLWHNWGTLEARRGDYVLARKLFQRGL 132
                  58**********************976 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 2e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAlel 30 
                   +l+ l+ + ++lg++++A+++f kA +l
  MMETSP0890-20130614|27050_1 146 LLLHSLASLELRLGRFDDAANLFLKAASL 174
                  5789999*******************998 PP

  == domain 5    score: 17.6 bits;  conditional E-value: 1.4e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                  +eal++ G++++++ +++ A +a+ +Al+ +P+
  MMETSP0890-20130614|27050_1 420 PEALFAVGKCLEANHKLDAADKAYAQALQVAPD 452
                  69*****************************98 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.42
                  HHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                  +l+++  +++d++ A+  +   l   P++
  MMETSP0890-20130614|27050_1 459 ALAQLRSRRRDFDGARSILAAGLDASPTD 487
                  689999999******99888888888875 PP

  == domain 7    score: -0.2 bits;  conditional E-value: 0.75
                  HHHHHHHHHHHHHTT-HH CS
   PF07719.12   1 aealynlGlayyklgdye 18 
                  a +++ ++ + ++lg+++
  MMETSP0890-20130614|27050_1 491 AAIWHHWAALEAQLGNLD 508
                  6789************87 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.017        25      24      75 ..       2      55 ..       1      57 [. 0.78
   2 ?    3.8   0.0     0.032        48       6      39 ..      27      60 ..      19      88 .. 0.71
   3 !   29.1   0.1     4e-10   6.1e-07       5      75 ..     105     174 ..     101     177 .. 0.87
   4 !   15.9   1.0   5.5e-06    0.0084       6      75 ..     421     483 ..     416     486 .. 0.91
   5 ?    0.4   0.1      0.38   5.8e+02       4      31 ..     490     517 ..     485     520 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.017
    PF13424.1 24 Alelyekalel.lrelgd.dhpdtaralnnlanlylalgdydeAleylekAlei 75
                 A ++++ al+   + +++ +   + r+l+  a + ++ gd + +  y+ +++++
  MMETSP0890-20130614|27050_1  2 ATTHLQNALKCaKSDTKPiARRMLPRILTTAAVVAAEVGDRQRSHTYFDQCHRL 55
                 667888888885555666555667899999999999999999999999998876 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.032
    PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalellrelg 39
                 +il+  a v  + gd +++ +++ ++  l   +g
  MMETSP0890-20130614|27050_1 27 RILTTAAVVAAEVGDRQRSHTYFDQCHRLEPYHG 60
                 5677777777777888888888877776654444 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 4e-10
    PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                   t+++n++++  r gdy  A++l+++ l  +++  +  +dt  +l+ la l l+lg++d+A +++ kA  +
  MMETSP0890-20130614|27050_1 105 PTLWHNWGTLEARRGDYVLARKLFQRGLFEISSS-RSRADTPLLLHSLASLELRLGRFDDAANLFLKAASL 174
                  5889***********************9444443.45689****************************876 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 5.5e-06
    PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                   +l+  + +l++ +++d A + y +al+++       pd+ r+ + la+l  ++ d+d A+  l   l++
  MMETSP0890-20130614|27050_1 421 EALFAVGKCLEANHKLDAADKAYAQALQVA-------PDLSRCALALAQLRSRRRDFDGARSILAAGLDA 483
                  689999***********************9.......999*********************999877765 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.38
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyeka 31 
                   a+i++ +a +  +lg++d   +l ++a
  MMETSP0890-20130614|27050_1 490 AAAIWHHWAALEAQLGNLDGLATLHKRA 517
                  5789999999999999998766666666 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       6.5   9.9e+03      22      36 ..       2      16 ..       2      23 .. 0.68
   2 !   10.0   0.0   0.00029      0.44       6      65 ..      29      88 ..      24      93 .. 0.90
   3 !   16.0   0.1   4.1e-06    0.0063       5      67 ..     107     174 ..     103     175 .. 0.84
   4 !   11.8   0.6   8.5e-05      0.13       3      58 ..     145     198 ..     143     200 .. 0.88
   5 !   17.8   0.9   1.1e-06    0.0017      26      69 .]     409     451 ..     404     451 .. 0.91
   6 ?    3.4   0.2     0.035        54       5      53 ..     456     507 ..     452     519 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 6.5
    PF13414.1 22 AieayekAleldpnn 36
                 A  ++++Al+  +++
  MMETSP0890-20130614|27050_1  2 ATTHLQNALKCAKSD 16
                 556778888776665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00029
    PF13414.1  6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65
                 l  ++ ++ + gd + +  +++++ +l+p +  +y++ A + ++  +d ++A+++++k l
  MMETSP0890-20130614|27050_1 29 LTTAAVVAAEVGDRQRSHTYFDQCHRLEPYHGAAYAAEADCAWRIFRDVDAARRALRKGL 88
                 67788999999*********************************9999999999998865 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 4.1e-06
    PF13414.1   5 alkelGnalfkegdydeAieayekAl.el.....dpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                   + + G    ++gdy  A ++++++l e+     + +++ l+  lA + l+lg ++++A+  + kA +l
  MMETSP0890-20130614|27050_1 107 LWHNWGTLEARRGDYVLARKLFQRGLfEIsssrsRADTPLLLHSLASLELRLG-RFDDAANLFLKAASL 174
                  699***********************53422222466788*************.7*****999998765 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 8.5e-05
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAl 58 
                  ++ l  l+   +++g++d+A  ++ kA +l ++   + + l++a  +l k  e+Al
  MMETSP0890-20130614|27050_1 145 PLLLHSLASLELRLGRFDDAANLFLKAASLTSHEKAAPCILGAARARL-KA-EAAL 198
                  6778899999**********************9999999999999998.44.7776 PP

  == domain 5    score: 17.8 bits;  conditional E-value: 1.1e-06
    PF13414.1  26 yekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                   + A++ d+n++e++++ +++++ +  + ++A ++y +Al+ +P
  MMETSP0890-20130614|27050_1 409 ASAAVSADSNCPEALFAVGKCLEANH-KLDAADKAYAQALQVAP 451
                  5789********************99.589***********998 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.035
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnae...lyynlAlaylklgkd 53 
                  ++ +l++   +++d+d+A   +  +l+ +p +a    ++   A++  +lg+ 
  MMETSP0890-20130614|27050_1 456 CALALAQLRSRRRDFDGARSILAAGLDASPTDAGaaaIWHHWAALEAQLGNL 507
                  667788888899******************9955455999999999999953 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.9      0.03        46       4      58 ..      33      88 ..      31     101 .. 0.84
   2 !   10.2   0.6   0.00056      0.85      11      58 ..      75     132 ..      75     145 .. 0.84
   3 !   15.1   1.3   1.6e-05     0.024       4      60 ..     112     174 ..     110     182 .. 0.81
   4 !   11.5   1.4   0.00023      0.34       2      43 ..     150     193 ..     149     201 .. 0.83
   5 !    7.8   3.1    0.0031       4.8      17      57 ..     255     301 ..     255     316 .. 0.90
   6 !   13.5   1.1   5.1e-05     0.078      15      63 ..     404     452 ..     399     454 .. 0.89
   7 !   12.0   5.5   0.00015      0.23       1      61 [.     458     521 ..     458     523 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.03
    PF13432.1  4 ArallraGdydeAlaaleaalalaPeaaeallllaeallrl.grldeAaallraal 58
                 A  + + Gd ++   ++++  +l+P +  a+ + a++++r   ++d+A+++lr+ l
  MMETSP0890-20130614|27050_1 33 AVVAAEVGDRQRSHTYFDQCHRLEPYHGAAYAAEADCAWRIfRDVDAARRALRKGL 88
                 66788889999999999999999****************555*******9998755 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00056
    PF13432.1  11 GdydeAlaal.eaalala......Pe...aaeallllaeallrlgrldeAaallraal 58 
                  +d+d+A++al + ++ l+      P+   a+  + +++ + +r+g++  A++l+++ l
  MMETSP0890-20130614|27050_1  75 RDVDAARRALrKGLITLNrsndkaPKaryAPTLWHNWGTLEARRGDYVLARKLFQRGL 132
                  58999999996666666698887755778*************************9855 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.6e-05
    PF13432.1   4 ArallraGdydeAlaal.eaalala.....PeaaeallllaeallrlgrldeAaallraalal 60 
                  + ++ r+Gdy  A++++ + + +        + +  l  la + lrlgr+d+Aa l+ +a++l
  MMETSP0890-20130614|27050_1 112 GTLEARRGDYVLARKLFqRGLFEISssrsrADTPLLLHSLASLELRLGRFDDAANLFLKAASL 174
                  5678899**********555555559988877999*******************777777655 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00023
    PF13432.1   2 alArallraGdydeAlaaleaalala..Peaaeallllaeallr 43 
                  +lA ++lr+G++d+A++++ +a  l    +aa   l+ a+a l+
  MMETSP0890-20130614|27050_1 150 SLASLELRLGRFDDAANLFLKAASLTshEKAAPCILGAARARLK 193
                  58999999999999999999999999776688888888888776 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0031
    PF13432.1  17 laaleaalalaPeaaeallllaeallrl......grldeAaallraa 57 
                  ++++ aa+ ++P++ +a+ l+a a  r+      gr+ eAa+ l++a
  MMETSP0890-20130614|27050_1 255 RELFAAAVLADPGDGRAWRLWASAENRKgtrilaGRVLEAAKRLARA 301
                  68999***********************9999999999999777764 PP

  == domain 6    score: 13.5 bits;  conditional E-value: 5.1e-05
    PF13432.1  15 eAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                   A ++ +aa+ ++  ++eal++ + +l +  +ld+A +++++al+ aPd
  MMETSP0890-20130614|27050_1 404 VASRLASAAVSADSNCPEALFAVGKCLEANHKLDAADKAYAQALQVAPD 452
                  6889999********************9998888888999999999997 PP

  == domain 7    score: 12.0 bits;  conditional E-value: 0.00015
    PF13432.1   1 lalArallraGdydeAlaaleaalala...PeaaeallllaeallrlgrldeAaallraalala 61 
                  lalA+++ r++d+d A+ +l a l++     +aa ++  +a + ++lg+ld+ a l ++a+a++
  MMETSP0890-20130614|27050_1 458 LALAQLRSRRRDFDGARSILAAGLDASptdAGAAAIWHHWAALEAQLGNLDGLATLHKRAQAAG 521
                  79*************************99888********************999999997765 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   5.9e+03      23      33 ..      48      58 ..      39      59 .. 0.84
   2 !    5.2   0.0    0.0097        15       3      28 ..     107     132 ..     105     132 .. 0.92
   3 !    6.1   0.0    0.0052       7.8       4      28 ..     148     172 ..     145     174 .. 0.85
   4 !   13.2   0.3   2.9e-05     0.044       2      33 ..     421     452 ..     420     453 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.9
                 HHHHHHHHHTT CS
   PF00515.23 23 yyekALelnPn 33
                 y++++ +l+P 
  MMETSP0890-20130614|27050_1 48 YFDQCHRLEPY 58
                 89999999995 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0097
                  HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyyekAL 28 
                   + n G +  + g+y  A + +++ L
  MMETSP0890-20130614|27050_1 107 LWHNWGTLEARRGDYVLARKLFQRGL 132
                  699********************976 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0052
                  HHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekAL 28 
                  l  l+ + l+lg++d+A   + kA 
  MMETSP0890-20130614|27050_1 148 LHSLASLELRLGRFDDAANLFLKAA 172
                  567899999************9996 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 2.9e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                  +al+  G ++  + k+d A ++y +AL++ P+
  MMETSP0890-20130614|27050_1 421 EALFAVGKCLEANHKLDAADKAYAQALQVAPD 452
                  899999*************************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         9   1.4e+04      10      24 ..      37      51 ..      33      58 .. 0.70
   2 ?    1.3   0.0      0.21   3.3e+02       6      27 ..     112     131 ..     107     141 .. 0.80
   3 !   12.8   0.1   4.7e-05     0.071       2      29 ..     148     175 ..     147     182 .. 0.88
   4 ?    1.4   0.1       0.2   3.1e+02      14      31 ..     435     452 ..     422     455 .. 0.71
   5 !   11.0   0.0   0.00018      0.27       3      35 ..     458     488 ..     456     489 .. 0.93
   6 ?    1.4   0.0      0.21   3.1e+02       8      27 ..     500     517 ..     498     528 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 9
    PF13176.1 10 srlgdyekAielyer 24
                  ++gd+++  +++ +
  MMETSP0890-20130614|27050_1 37 AEVGDRQRSHTYFDQ 51
                 678888887666665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.21
    PF13176.1   6 arlysrlgdyekAielyeraLa 27 
                  + l  r+gdy  A +l++r  +
  MMETSP0890-20130614|27050_1 112 GTLEARRGDYVLARKLFQR--G 131
                  667789************9..4 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 4.7e-05
    PF13176.1   2 llnLarlysrlgdyekAielyeraLalt 29 
                  l+ La+l  rlg++++A++l+ +a  lt
  MMETSP0890-20130614|27050_1 148 LHSLASLELRLGRFDDAANLFLKAASLT 175
                  799*******************977666 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.2
    PF13176.1  14 dyekAielyeraLaltkd 31 
                  + + A ++y +aL+++ d
  MMETSP0890-20130614|27050_1 435 KLDAADKAYAQALQVAPD 452
                  6799*******8877766 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 0.00018
    PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdplda 35 
                  l+La+l sr++d++ A +++ +  +l+ +p da
  MMETSP0890-20130614|27050_1 458 LALAQLRSRRRDFDGARSILAA--GLDASPTDA 488
                  79********************..***999886 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.21
    PF13176.1   8 lysrlgdyekAielyeraLa 27 
                  l  +lg+ + +++l++r  a
  MMETSP0890-20130614|27050_1 500 LEAQLGNLDGLATLHKR--A 517
                  56789***********9..4 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1       0.4     6e+02       2      40 ..      27      65 ..      26      69 .. 0.85
   2 ?    1.9   0.6      0.28   4.2e+02       8      28 ..      67      88 ..      60     103 .. 0.71
   3 !    7.1   0.0    0.0058       8.8       2      28 ..     106     132 ..     105     140 .. 0.91
   4 !   12.6   0.5   9.9e-05      0.15       3      30 ..     147     174 ..     145     192 .. 0.84
   5 ?    4.7   0.2     0.035        54      22      43 ..     256     277 ..     254     278 .. 0.90
   6 ?    2.3   1.9      0.21   3.2e+02       2      37 ..     270     307 ..     270     312 .. 0.86
   7 !   12.1   1.8   0.00014      0.21       1      44 []     420     463 ..     420     463 .. 0.97
   8 !   13.6   2.2   4.9e-05     0.075       4      43 ..     457     499 ..     454     500 .. 0.83
   9 ?    2.8   0.8      0.15   2.2e+02       2      29 ..     492     519 ..     490     527 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.4
    PF13428.1  2 eallalarallalGdpdeAiallrralalaPddaealll 40
                 + l   a + ++ Gd ++   ++++  +l P + +a+ +
  MMETSP0890-20130614|27050_1 27 RILTTAAVVAAEVGDRQRSHTYFDQCHRLEPYHGAAYAA 65
                 6677889999*******************9998888766 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.28
    PF13428.1  8 aralla.lGdpdeAiallrral 28
                 a+  ++   d+d+A+++lr+ l
  MMETSP0890-20130614|27050_1 67 ADCAWRiFRDVDAARRALRKGL 88
                 55444426899********976 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0058
    PF13428.1   2 eallalarallalGdpdeAiallrral 28 
                   ++  ++ + +++Gd+  A++l++r l
  MMETSP0890-20130614|27050_1 106 TLWHNWGTLEARRGDYVLARKLFQRGL 132
                  579999******************976 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 9.9e-05
    PF13428.1   3 allalarallalGdpdeAiallrralal 30 
                  +l  la + l+lG++d+A++l+ +a++l
  MMETSP0890-20130614|27050_1 147 LLHSLASLELRLGRFDDAANLFLKAASL 174
                  57789*******************9875 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.035
    PF13428.1  22 allrralalaPddaealllLar 43 
                  +l+ +a+ ++P+d +a++l+a 
  MMETSP0890-20130614|27050_1 256 ELFAAAVLADPGDGRAWRLWAS 277
                  7999***************996 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.21
    PF13428.1   2 eallalarallalGdpdeAiallrra..lalaPddaea 37 
                  +a++++a a  + G    A ++l++a  la+aPd a a
  MMETSP0890-20130614|27050_1 270 RAWRLWASAENRKGTRILAGRVLEAAkrLARAPDPALA 307
                  58999999999999999999999998778899997765 PP

  == domain 7    score: 12.1 bits;  conditional E-value: 0.00014
    PF13428.1   1 peallalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  peal a +  l+a++ +d+A +++ +al+ aPd  +  l+La+l
  MMETSP0890-20130614|27050_1 420 PEALFAVGKCLEANHKLDAADKAYAQALQVAPDLSRCALALAQL 463
                  78999*************************************97 PP

  == domain 8    score: 13.6 bits;  conditional E-value: 4.9e-05
    PF13428.1   4 llalarallalGdpdeAiallrralalaPdd...aealllLar 43 
                   lala++  ++ d+d+A+  l + l ++P+d   a++++++a+
  MMETSP0890-20130614|27050_1 457 ALALAQLRSRRRDFDGARSILAAGLDASPTDagaAAIWHHWAA 499
                  6899*************************99333456677765 PP

  == domain 9    score: 2.8 bits;  conditional E-value: 0.15
    PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                  + +  +a++ ++lG++d+ + l +ra a
  MMETSP0890-20130614|27050_1 492 AIWHHWAALEAQLGNLDGLATLHKRAQA 519
                  67899************98888888744 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2   1.9e+03       3      26 ..     107     130 ..     105     132 .. 0.82
   2 !    9.5   0.0   0.00052       0.8       4      30 ..     148     174 ..     145     176 .. 0.91
   3 !    9.0   0.0   0.00072       1.1       2      33 ..     421     452 ..     420     453 .. 0.93
   4 ?   -3.3   0.0       6.3   9.6e+03      10      18 ..     500     508 ..     495     508 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.2
                  -TTT---HHHHTT-HHHHHHHHH- CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylek 26 
                  +++n G +++  Gdy +A + +++
  MMETSP0890-20130614|27050_1 107 LWHNWGTLEARRGDYVLARKLFQR 130
                  577778899999***999998876 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00052
                  TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalel 30 
                  ++ l+++++ lG++d A + + ka +l
  MMETSP0890-20130614|27050_1 148 LHSLASLELRLGRFDDAANLFLKAASL 174
                  7889*******************9876 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00072
                  --TTT---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkpr 33 
                  +a+++ G++++ + + d+A +++ +al+ +p+
  MMETSP0890-20130614|27050_1 421 EALFAVGKCLEANHKLDAADKAYAQALQVAPD 452
                  689999**********************9995 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 6.3
                  HHHHTT-HH CS
    PF13181.1  10 iYrqlGdyd 18 
                  +++qlG+ d
  MMETSP0890-20130614|27050_1 500 LEAQLGNLD 508
                  578999987 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2   3.1e+03       2      14 ..       6      18 ..       5      25 .. 0.74
   2 ?    4.6   0.0     0.027        41      13      34 .]     105     126 ..      91     126 .. 0.89
   3 ?    2.0   0.0      0.18   2.7e+02      15      32 ..     147     164 ..     143     166 .. 0.89
   4 ?    1.6   0.0      0.24   3.7e+02       2      27 ..     258     283 ..     257     288 .. 0.85
   5 ?    0.0   0.0      0.78   1.2e+03      13      32 ..     420     439 ..     409     441 .. 0.80
   6 ?    4.6   0.0     0.027        41       1      33 [.     442     474 ..     442     475 .. 0.93
   7 ?   -2.3   0.0       4.3   6.5e+03       6      29 ..     481     507 ..     479     509 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2
    PF13431.1  2 yekaleldPnnad 14
                 +++al++++ ++ 
  MMETSP0890-20130614|27050_1  6 LQNALKCAKSDTK 18
                 799****998854 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.027
    PF13431.1  13 adaynnLAelllnnGdleeAeq 34 
                  + +++n ++l +++Gd+  A++
  MMETSP0890-20130614|27050_1 105 PTLWHNWGTLEARRGDYVLARK 126
                  568**************99985 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.18
    PF13431.1  15 aynnLAelllnnGdleeA 32 
                  +++ LA l l++G++++A
  MMETSP0890-20130614|27050_1 147 LLHSLASLELRLGRFDDA 164
                  7899************99 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.24
    PF13431.1   2 yekaleldPnnadaynnLAelllnnG 27 
                  +  a+  dP +  a++  A +  ++G
  MMETSP0890-20130614|27050_1 258 FAAAVLADPGDGRAWRLWASAENRKG 283
                  5678999**********999877776 PP

  == domain 5    score: 0.0 bits;  conditional E-value: 0.78
    PF13431.1  13 adaynnLAelllnnGdleeA 32 
                  ++a+++ +++l +n +l+ A
  MMETSP0890-20130614|27050_1 420 PEALFAVGKCLEANHKLDAA 439
                  89999999999999999987 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.027
    PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                  +y +al+ +P+ +    +LA+l +++ d++ A+
  MMETSP0890-20130614|27050_1 442 AYAQALQVAPDLSRCALALAQLRSRRRDFDGAR 474
                  5999************************99997 PP

  == domain 7    score: -2.3 bits;  conditional E-value: 4.3
    PF13431.1   6 leldPnn...adaynnLAelllnnGdl 29 
                  l+ +P++   a  ++  A l + +G+l
  MMETSP0890-20130614|27050_1 481 LDASPTDagaAAIWHHWAALEAQLGNL 507
                  677888866677777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.91
# Mc/sec: 1495.75
//
Query:       MMETSP0890-20130614|27080_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 302.15
//
Query:       MMETSP0890-20130614|27083_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 1066.21
//
Query:       MMETSP0890-20130614|27091_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.70
# Mc/sec: 1211.87
//
Query:       MMETSP0890-20130614|27094_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-19   68.9   4.9    4.3e-19   68.5   3.4    1.1  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    2.7e-07   30.3   6.4    3.7e-07   29.8   4.4    1.2  1  PF03962.10 Mnd1 family
     0.0027   17.8   1.0      0.042   14.0   0.7    2.2  1  PF07739.8  TipAS antibiotic-recognition domain
     0.0062   15.8   0.1       0.25   10.5   0.0    2.3  2  PF08475.5  Viral capsid protein 91 N-terminal
  ------ inclusion threshold ------
      0.032   13.4  10.9      0.037   13.2   1.9    2.1  2  PF12795.2  Mechanosensitive ion channel porin domain
       0.24   11.1   6.8        2.8    7.7   0.5    2.3  2  PF06103.6  Bacterial protein of unknown function (DUF948)
       0.31   10.9   7.3       0.19   11.6   0.8    2.7  3  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.71    9.9   7.8        1.8    8.6   5.5    1.7  1  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   3.4   2.5e-22   4.3e-19       1     168 [.       8     170 ..       8     171 .. 0.93

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 2.5e-22
    PF07106.8   1 eaeelilkylkeqnrPysvqdvvdnlqkklgKtavqkaLdeLvdegkikekeyGKqkiYlanqdqlellsdeelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeankevtkeeiekvkkeykklkkewkkrkklc 168
                  +a ++i +yl+ + rP++  +v + +q  +++ ++  +Ld+L  ++++ +k++G  kiY   + q    s  e++  +++ ++++++++++++ei ++ k+ k+L +++t+ el e++ + +  ++ei +k+e   + +  +tk +++++ ke+++l + w +rk+ c
  MMETSP0890-20130614|27094_1   8 DARGKIHHYLQTNCRPFGLCQVLAKTQ--VERGVAEAMLDQLIRNELVASKTIGNNKIYWSVEHQAC--SIDEIEGYQKKAADYKTQMSQIEKEITTIAKKTKALLAQPTNVELDENLIQAESILNEITSKVETATS-RGTITKPQMQQATKEHNNLLSTWIQRKRAC 170
                  68999****************999765..78889999************************999877..66788888999****************************************************98765.56789999********************98 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   4.4   2.2e-10   3.7e-07      20     155 ..      29     164 ..      25     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.2e-10
   PF03962.10  20 llpkkkgissmsVKevlqsLvddnlvrveKiGtsnlYWsFpseakkklkteleklkkeleelkqrikelqaeiekekkkreet...eereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwt 155
                  +l k +++   + + +l +L+ ++lv  + iG++++YWs   +a +   +e+e ++k+ +++k++++++++ei + +kk +      +  el e+l + e+ l+++ +++e++++    +  +++++t++  + + +w 
  MMETSP0890-20130614|27094_1  29 VLAK-TQVERGVAEAMLDQLIRNELVASKTIGNNKIYWSVEHQACSI--DEIEGYQKKAADYKTQMSQIEKEITTIAKKTKALlaqPTNVELDENLIQAESILNEITSKVETATSRGTITKPQMQQATKEHNNLLSTWI 164
                  5666.78888888999************************9999874..6788888888888888888888887776666655555677789999****************9999999999999999999999888885 PP

>> PF07739.8  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.7   2.5e-05     0.042      31      88 ..     122     178 ..      67     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
                  --TTHHHHHHHHHHHHHHH----TT----HHHHHHHH---TTSS----HHHHH---TT CS
    PF07739.8  31 eelkkeweelfaelaaamekgvdpdseevqelakehrdlleeftgcdeealaglaemy 88 
                   ++++  +e++ ++ +a ++g   + +++q++ keh +ll+++ +  ++ ++ + ++ 
  MMETSP0890-20130614|27094_1 122 IQAESILNEITSKVETATSRG-TITKPQMQQATKEHNNLLSTWIQRKRACHEIIDDLS 178
                  45566699************9.*******************99997777777666665 PP

>> PF08475.5  Viral capsid protein 91 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00015      0.25     136     177 ..      17      60 ..      11      65 .. 0.78
   2 ?    2.9   0.0     0.031        54      20      70 ..     145     197 ..     138     206 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
    PF08475.5 136 dgekCvpipvCeeksegk..lplteklldrlvfnkrvakeekee 177
                   +++C p+ +C+  ++++   ++ e++ld+l+ n+ va++++ +
  MMETSP0890-20130614|27094_1  17 LQTNCRPFGLCQVLAKTQveRGVAEAMLDQLIRNELVASKTIGN 60 
                  5679*******9655544339****************9996433 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.031
    PF08475.5  20 vkdfdeeefekrlkvlkeylkrtnaeeplpdvlsyvseVdenlYv..vttfdt 70 
                  +k   +++++++ + l+ +++r++a + ++d ls   ++++++++  +++f+t
  MMETSP0890-20130614|27094_1 145 TKPQMQQATKEHNNLLSTWIQRKRACHEIIDDLSENFDMTKKTFIahIEEFST 197
                  55556778888888888999998888888888887777777776523445554 PP

>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.9   2.2e-05     0.037      30      70 ..      74     112 ..      71     120 .. 0.88
   2 ?    5.2   1.2     0.006        10      96     139 ..     116     159 ..     115     165 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.2e-05
    PF12795.2  30 ldeikkskqkadqyqkiiddapkelrelrqelealksaeea 70 
                  +dei+ +++ka++y++++++  ke+ ++ ++ +al ++  +
  MMETSP0890-20130614|27094_1  74 IDEIEGYQKKAADYKTQMSQIEKEITTIAKKTKALLAQ--P 112
                  79******************************999777..3 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.006
    PF12795.2  96 elqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqal 139
                  el e+l q++s l e+ +  e+a ++ +  + ++q++++++++l
  MMETSP0890-20130614|27094_1 116 ELDENLIQAESILNEITSKVETATSRGTITKPQMQQATKEHNNL 159
                  6789999*********************************9997 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.5    0.0016       2.8      33      61 ..      82     110 ..      71     120 .. 0.63
   2 ?    6.5   0.6    0.0038       6.5      21      68 ..     121     168 ..     114     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0016
    PF06103.6  33 ktvkkltkqvdgitketeellaktnelle 61 
                  k  ++ ++q+ +i ke++ + +kt++ll 
  MMETSP0890-20130614|27094_1  82 KKAADYKTQMSQIEKEITTIAKKTKALLA 110
                  44555566666666666666666666654 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0038
    PF06103.6  21 lkklkktldevnktvkkltkqvdgitketeellaktnelleDvneKve 68 
                  l++++++l+e+++ v++ t+    ++ ++++ +++ n+ll    +++ 
  MMETSP0890-20130614|27094_1 121 LIQAESILNEITSKVETATSRGTITKPQMQQATKEHNNLLSTWIQRKR 168
                  7888999****************************9999987544444 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   0.00011      0.19      38     101 ..      37     102 ..      26     104 .. 0.85
   2 ?    1.0   0.4      0.21   3.6e+02      56      66 ..     146     156 ..     105     190 .. 0.47
   3 ?    0.7   0.1      0.27   4.6e+02      47      89 ..     152     194 ..     145     203 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHHHHHHHHHHHHGGGTTT....HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17  38 rrelqveleelqaerNelskeIgkakkkk..edaeeliaevkelkeelkaleaelkeleaelekll 101
                  r  +++ l++l ++   +sk+Ig+ k     e  +  i+e++  +++ ++++ +++++e+e+++++
  MMETSP0890-20130614|27094_1  37 RGVAEAMLDQLIRNELVASKTIGNNKIYWsvEHQACSIDEIEGYQKKAADYKTQMSQIEKEITTIA 102
                  555566677777778889********98798999999*************************9886 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.21
                  HHHGGGTTT.. CS
   PF02403.17  56 skeIgkakkkk 66 
                    ++++a k++
  MMETSP0890-20130614|27094_1 146 KPQMQQATKEH 156
                  22333333322 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.27
                  HHHHHHHHHHHHGGGTTT..HHCCCHHHHHHHHHHHHHHHHHH CS
   PF02403.17  47 elqaerNelskeIgkakkkkedaeeliaevkelkeelkaleae 89 
                    ++  N ls  I+++ + +e +++l ++ +  k+ + a  +e
  MMETSP0890-20130614|27094_1 152 ATKEHNNLLSTWIQRKRACHEIIDDLSENFDMTKKTFIAHIEE 194
                  4455666777778777777777777777777777666555555 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.5     0.001       1.8       6      86 ..      81     158 ..      76     187 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.001
   PF00804.20   6 feqveeIrgeiekisekveelkrlhsrilaspdpdkqtkeeleeltaeikklankirskLksleqsie..qeegqnrssadlr 86 
                  ++++ + + ++++i++ +  ++++ +++la p+     ++el+e   +   ++n+i sk++   +     + + q+ ++   +
  MMETSP0890-20130614|27094_1  81 QKKAADYKTQMSQIEKEITTIAKKTKALLAQPT-----NVELDENLIQAESILNEITSKVETATSRGTitKPQMQQATKEHNN 158
                  688999999***********************9.....566666666666666666666664333311113333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1226  (0.0896723); expected 273.4 (0.02)
Passed bias filter:                      591  (0.043227); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.64
# Mc/sec: 872.42
//
Query:       MMETSP0890-20130614|27131_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-14   51.5  10.6    5.9e-07   29.1   1.5    2.4  2  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   1.0   1.6e-10   2.2e-06       4      31 .]      54      81 ..      52      81 .. 0.90
   2 !   29.1   1.5   4.3e-11   5.9e-07       2      31 .]      95     124 ..      94     124 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.6e-10
                 SEEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21  4 gWeersddd.dGrvYYyNheTgetqWekP 31
                 gW+e+  d  +G +Y++N +Tg ++W+ P
  MMETSP0890-20130614|27131_1 54 GWREYR-DYaSGCTYFHNEATGISSWDEP 81
                 8**988.5788***************988 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 4.3e-11
                  --SEEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21   2 ppgWeersddd.dGrvYYyNheTgetqWekP 31 
                  ppgW +  d + +G++Y+y++e + ++W+ P
  MMETSP0890-20130614|27131_1  95 PPGWIVTLD-EnSGQYYFYHPELRHSTWTQP 124
                  9***99995.559***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 1014.93
//
Query:       MMETSP0890-20130614|27133_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-26   91.8  20.5    1.6e-06   28.1   0.0    7.3  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    4.7e-11   41.8  21.9    0.00055   19.3   0.5    5.1  5  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.46   3.1e+03      21      44 ..      65      89 ..      61      96 .. 0.72
   2 !   26.6   0.0   6.5e-10   4.4e-06       3      51 .]     103     155 ..     101     155 .. 0.90
   3 !   28.1   0.0   2.3e-10   1.6e-06       1      51 []     158     212 ..     158     212 .. 0.96
   4 !   16.7   1.1   8.4e-07    0.0057       1      51 []     215     288 ..     215     288 .. 0.77
   5 !   22.5   0.0   1.3e-08   8.9e-05       5      31 ..     295     320 ..     291     334 .. 0.92
   6 ?    1.0   0.1     0.065   4.4e+02       1      13 [.     359     373 ..     359     374 .. 0.87
   7 !    4.8   0.0    0.0043        30      12      43 ..     420     453 ..     419     461 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.46
                 -----S-EE-GGG--.----EEE-- CS
   PF00415.13 21 eenvlvPvkveglsg.vrvvqvacG 44
                 e +  +Pv + g+   v++++++ G
  MMETSP0890-20130614|27133_1 65 EPEFYTPVIIGGPLLnVKITSISVG 89
                 5555677777666555999999988 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 6.5e-10
                  EEEEE---------...--------S-EE-GGG--..----EEE-----EEEE CS
   PF00415.13   3 rVysWGrndyGqLG..kggseenvlvPvkveglsg..vrvvqvacGgsHtlal 51 
                  +V++WG n++GqLG  + + +  v+ P++ +  ++     +++a G +H+l+l
  MMETSP0890-20130614|27133_1 103 QVWAWGLNTNGQLGlgNSCPAVVVRSPKLAKEWRNddAVPIKAAVGKNHSLVL 155
                  7*************888888999999*999998888988899999*****986 PP

  == domain 3    score: 28.1 bits;  conditional E-value: 2.3e-10
                  TTEEEEE---------.....--------S-EE-GGG------EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLG....kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                  +G V s G++++G LG    k+++ e +  P++v+g+ g++ +++a+G++++l++
  MMETSP0890-20130614|27133_1 158 NGIVLSAGCGTRGALGrgsrKLDQPEIEKNPRQVTGPAGENGTDIAAGCDFSLIV 212
                  5889************************************************975 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 8.4e-07
                  TTEEEEE---------..............--------S-EE-GGG--..........----EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLG.............kggseenvlvPvkveglsg..........vrvvqvacGgsHtlal 51 
                  +G++ys+G++++G LG             ++ +   +  P +++ +              +v  ++G +H +++
  MMETSP0890-20130614|27133_1 215 SGNIYSFGWSEFGKLGtgsdgqyntkassIKLTYTVEGEPLQIQIPGAkspgaqklddFFIVTCSAGKNHAACI 288
                  69**************8888888888887777777777777766666666778888777788888888887775 PP

  == domain 5    score: 22.5 bits;  conditional E-value: 1.3e-08
                  EEE---------.--------S-EE-G CS
   PF00415.13   5 ysWGrndyGqLGkggseenvlvPvkve 31 
                  y+WG + yG LG + ++e+++ P+++ 
  MMETSP0890-20130614|27133_1 295 YTWGDGAYGKLG-HRNQEQCNAPTRLD 320
                  9***********.***********985 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.065
                  TTEEEEE-..----- CS
   PF00415.13   1 dGrVysWG..rndyG 13 
                  dG +y WG  ++++G
  MMETSP0890-20130614|27133_1 359 DGILYLWGvlKGTHG 373
                  899*****8888887 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.0043
                  -----..--------S-EE-GGG--.----EEE- CS
   PF00415.13  12 yGqLG.kggseenvlvPvkveglsg.vrvvqvac 43 
                  +GqLG  +   ++ ++P+k+  l++     qv++
  MMETSP0890-20130614|27133_1 420 FGQLGyGEHGPKSSHKPQKLHDLEDaGICAQVTA 453
                  69***9999999*******999998633334444 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5   8.1e-08   0.00055       2      30 .]      84     114 ..      83     114 .. 0.81
   2 !   13.5   0.1   5.3e-06     0.037       5      29 ..     146     170 ..     143     171 .. 0.92
   3 !   17.7   0.1   2.5e-07    0.0017       2      29 ..     200     227 ..     200     228 .. 0.95
   4 !    3.9   1.1    0.0056        38       5      29 ..     279     303 ..     276     304 .. 0.92
   5 ?   -2.2   0.1      0.46   3.2e+03      16      24 ..     358     366 ..     358     373 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.1e-08
                  -EEE--..---EEEE-.---EEEE---TTST CS
    PF13540.1   2 vsvsaG..gyHtcaLtsdGaVlcWGsNssGQ 30 
                  +s+s G  + H + L +  +V++WG N++GQ
  MMETSP0890-20130614|27133_1  84 TSISVGpcSGHCLLLSDKAQVWAWGLNTNGQ 114
                  56666655678888888899**********9 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 5.3e-06
                  E-----EEEE-.---EEEE---TTS CS
    PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssG 29 
                  + G +H+++L ++G Vl+ G+++ G
  MMETSP0890-20130614|27133_1 146 AVGKNHSLVLFDNGIVLSAGCGTRG 170
                  6799******************998 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 2.5e-07
                  -EEE-----EEEE-.---EEEE---TTS CS
    PF13540.1   2 vsvsaGgyHtcaLtsdGaVlcWGsNssG 29 
                  ++++aG ++++++ts+G ++++G+ ++G
  MMETSP0890-20130614|27133_1 200 TDIAAGCDFSLIVTSSGNIYSFGWSEFG 227
                  58**********************9988 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.0056
                  E-----EEEE-.---EEEE---TTS CS
    PF13540.1   5 saGgyHtcaLtsdGaVlcWGsNssG 29 
                  saG +H+  +  +G  ++WG++ +G
  MMETSP0890-20130614|27133_1 279 SAGKNHAACIAKNGIGYTWGDGAYG 303
                  7899999999999999*******99 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 0.46
                  .---EEEE- CS
    PF13540.1  16 sdGaVlcWG 24 
                  +dG ++ WG
  MMETSP0890-20130614|27133_1 358 NDGILYLWG 366
                  69****9*9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.38s 00:00:01.19 Elapsed: 00:00:00.77
# Mc/sec: 1615.21
//
Query:       MMETSP0890-20130614|27147_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:01.22
# Mc/sec: 212.14
//
Query:       MMETSP0890-20130614|27144_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-13   49.4   0.1    1.1e-12   48.1   0.1    1.6  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.1   8.3e-17   1.1e-12       3     203 ..     172     437 ..     171     439 .. 0.66

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 8.3e-17
    PF04577.9   3 fgHwlvdvlprl.llleslrldddlpil..................vpeladpppfqrellellgi.pedrivveld......rpvrvrrlivptpgflagdfkggllp.............alrdrlrsrlalkpr....kkprilyisRlkag..sRriaN......edell.............kllkkrgfevvdpeelsfeeQvalfssakvivgphGsgLtnllFappgtrvlelvsp....prldle.fenlaallgldyvyv 203
                  ++H + d+l +l + l++ +  ++ +++                   +e++  ++++r+ll ++gi  e++i  e++      ++ ++ +++++  +  +++ +g  ++             +l + + ++l++++     + p il ++R++++  + +iaN      +de                +++++ + +  p   +++eQ+ l+ sa  i+gphG++ +n +F+++   vle+  p    ++++++ +  +a+ lgl y+ v
  MMETSP0890-20130614|27144_1 172 YFHTMYDTLGTLaFGLDEIYATRS-KVVmntcidahdlhllergkrRSEICVHHSYVRQLLLAAGItSEQII--EYPfqdpklDTLFLGEAYAVIDTSMQSSKRGDYFKpielesrslsvvhKLQESFFRHLRITEEeitpIVPYILLVDRNDSSlsWHKIANpnddsnFDEARivgnirdiatalkVAFPEYRIIIHAPPYGTVREQAILYGSAAAIIGPHGAAESNYIFCRRQVPVLEI-LPilnpKYISSPlYIGVARDLGLFYWTV 437
                  56**********888888888888.333133333333333355555555555559999***999**555555..4444244444444447777666664444444433356667888877776666666666666657666888*******666677777776433333112213355554445555555588888888***********************************9999999.6635545555558888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:01.06
# Mc/sec: 1103.23
//
Query:       MMETSP0890-20130614|27164_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-21   76.0   0.7      3e-21   75.3   0.2    1.5  2  PF04536.9  Repair protein
  ------ inclusion threshold ------
       0.11   12.0   0.0        0.2   11.1   0.0    1.4  1  PF09509.5  Protein of unknown function (Hypoth_ymh)
       0.13   11.4   5.1        1.1    8.4   1.9    2.5  2  PF08271.7  TFIIB zinc-binding
       0.16   11.7   2.2        3.8    7.3   0.2    2.6  2  PF09855.4  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
       0.32   10.8   7.1         16    5.3   0.0    3.7  4  PF09723.5  Zinc ribbon domain
       0.32   10.3   3.8       0.39   10.1   0.4    2.3  2  PF14319.1  Transposase zinc-binding domain
       0.75    9.2   4.5        1.1    8.6   0.4    2.4  2  PF01667.12 Ribosomal protein S27
       0.86    9.3   6.5         22    4.8   1.1    3.0  3  PF12773.2  Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF04536.9  Repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.2   1.7e-24     3e-21       1     119 []      23     143 ..      23     143 .. 0.96
   2 ?   -3.8   0.0       5.9     1e+04      54      64 ..     245     255 ..     229     271 .. 0.58

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 1.7e-24
                  ---HHHHHHH---HHHHHHTT----EEEEESB---..--HHHHHHHHHHH------S-----EEEEETTTTEEEEE-------------HHHHHHHTHHHHH------------HHHHHHH CS
    PF04536.9   1 llseaerarleaavaelekktsgeivvvtvdslgd..esiedyaldlfrewgigkteddtgvLlvvslaerkveievgrglegkvpdafwdeilaelvpgfkagryaeGlaaaveaigall 119
                  +l+e+er++++ +++ + ++t++e++v+  d++ +  + + + a+ +f++wg+gk++d++g+L+v+ ++ r++++ +g+g + +++d+f++e+ ++l+p f +++y ++l +a+ +ig++l
  MMETSP0890-20130614|27164_1  23 ILTESERNEISIELDLITQDTGAEVAVLSWDRTAEdqKAAWRLATAVFDKWGVGKAHDNNGLLIVLFRKSRRLQFRTGEGTKTVIDDGFLTELAESLAPLFADEKYKQALSQAIGHIGQKL 143
                  69*******************************6666889999***************************************************************************976 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5.9
                  -S-----EEEE CS
    PF04536.9  54 teddtgvLlvv 64 
                  +++ +  L+v+
  MMETSP0890-20130614|27164_1 245 RRKSDNALVVI 255
                  44444444444 PP

>> PF09509.5  Protein of unknown function (Hypoth_ymh)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012       0.2       9      56 ..     115     162 ..     108     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
    PF09509.5   9 ilkaarkeyeqgdYreAvleavkaleakireksglndedgaeLvqqaf 56 
                  + +  + ++ +++Y++A+++a+  + +k+r +s  + + g+eL+q  +
  MMETSP0890-20130614|27164_1 115 LAESLAPLFADEKYKQALSQAIGHIGQKLRARSPYTWLYGKELWQFLL 162
                  66777889************************************9655 PP

>> PF08271.7  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.047        80       2      10 ..     184     192 ..     183     215 .. 0.77
   2 ?    8.4   1.9   0.00063       1.1       2      27 ..     314     341 ..     313     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.047
                  E-SSS--EE CS
    PF08271.7   2 kCPnCgste 10 
                  kCP+C  t+
  MMETSP0890-20130614|27164_1 184 KCPECFETY 192
                  8****8877 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00063
                  E-SSS--EEH..HB-.S----BB-SSS-B CS
    PF08271.7   2 kCPnCgstel..vfD.aerGelvCtdCGl 27 
                  kCP+C st+l  +   ++r e +C+ CG+
  MMETSP0890-20130614|27164_1 314 KCPKCESTTLlpLIPyFSRYE-LCPHCGC 341
                  8*******9547555799999.*****96 PP

>> PF09855.4  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.038        66       2      10 ..     314     322 ..     310     324 .. 0.85
   2 ?    7.3   0.2    0.0022       3.8       3      40 ..     336     373 ..     334     376 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.038
    PF09855.4   2 kCpKCgnte 10 
                  kCpKC++t+
  MMETSP0890-20130614|27164_1 314 KCPKCESTT 322
                  79***9986 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0022
    PF09855.4   3 CpKCgnteyeekeiratggglsklfdvqnkkftvvtCk 40 
                  Cp Cg++++ ek ++++ + l +  ++ + + +  +C+
  MMETSP0890-20130614|27164_1 336 CPHCGCRAATEKLVATSIASLERASEIHHYRRSCAFCH 373
                  *****************999999999999888877776 PP

>> PF09723.5  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0096        16      18      32 ..     174     188 ..     168     193 .. 0.85
   2 ?    4.4   0.0     0.019        33      27      35 ..     313     321 ..     306     328 .. 0.85
   3 ?    2.9   0.2     0.056        96      29      37 ..     336     345 ..     329     350 .. 0.73
   4 ?   -2.2   0.1       2.2   3.8e+03      28      34 ..     368     374 ..     362     376 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0096
    PF09723.5  18 lqsisdddeteCPeC 32 
                  +q i+d+  ++CPeC
  MMETSP0890-20130614|27164_1 174 IQYIQDQRRKKCPEC 188
                  7889999******** PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.019
    PF09723.5  27 teCPeCgse 35 
                  ++CP+C+s+
  MMETSP0890-20130614|27164_1 313 VKCPKCEST 321
                  79****995 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.056
    PF09723.5  29 CPeCgs.ekv 37 
                  CP+Cg  ++ 
  MMETSP0890-20130614|27164_1 336 CPHCGCrAAT 345
                  *****83344 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.2
    PF09723.5  28 eCPeCgs 34 
                   C +C++
  MMETSP0890-20130614|27164_1 368 SCAFCHK 374
                  6888887 PP

>> PF14319.1  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.25   4.2e+02      59      81 ..     181     203 ..     175     212 .. 0.75
   2 ?   10.1   0.4   0.00023      0.39      36      76 ..     306     349 ..     294     366 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.25
    PF14319.1  59 knrhCpkCqakateewlekqqee 81 
                  +++ Cp+C +++ ++ l++  ++
  MMETSP0890-20130614|27164_1 181 RRKKCPECFETYVDAPLDAPLAN 203
                  5679****998887777665555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00023
    PF14319.1  36 ealgghvvrCeeCghek...lvynsCknrhCpkCqakateewle 76 
                   a+ + +v+C++C+ ++   l++   +   Cp+C+ +a++e l 
  MMETSP0890-20130614|27164_1 306 GAVSFRHVKCPKCESTTllpLIPYFSRYELCPHCGCRAATEKLV 349
                  5678999********99333345566888******998877654 PP

>> PF01667.12  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.12     2e+02       9      16 ..     184     191 ..     182     193 .. 0.82
   2 ?    8.6   0.4   0.00066       1.1       5      18 ..     310     323 ..     307     344 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.12
                  E-TTT--E CS
   PF01667.12   9 kCpdCene 16 
                  kCp+C+++
  MMETSP0890-20130614|27164_1 184 KCPECFET 191
                  9****986 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00066
                  EEEEE-TTT--EEE CS
   PF01667.12   5 FldVkCpdCenetv 18 
                  F +VkCp+Ce +t 
  MMETSP0890-20130614|27164_1 310 FRHVKCPKCESTTL 323
                  889*******9986 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.059     1e+02      26      38 ..     179     191 ..     158     198 .. 0.78
   2 ?    4.8   1.1     0.013        22      30      50 .]     313     340 ..     306     340 .. 0.69
   3 ?    2.5   4.5     0.067   1.1e+02       1      37 [.     315     374 ..     315     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.059
    PF12773.2  26 taeevlCpsCges 38 
                  ++++++Cp+C e+
  MMETSP0890-20130614|27164_1 179 DQRRKKCPECFET 191
                  5666788888665 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.013
    PF12773.2  30 vlCpsCge.......svspkarfCpnCG 50 
                  v+Cp+C++       +     + Cp+CG
  MMETSP0890-20130614|27164_1 313 VKCPKCESttllpliPYFSRYELCPHCG 340
                  5688888877776555556666788887 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.067
    PF12773.2   1 CpqCgae.......npsgarfCpqCgaklk................eataeevlCpsCge 37 
                  Cp+C+           s+ + Cp+Cg +                  e ++ + +C  C++
  MMETSP0890-20130614|27164_1 315 CPKCESTtllplipYFSRYELCPHCGCRAAteklvatsiaslerasEIHHYRRSCAFCHK 374
                  888888888888666778899*****9999888888888888888744444556888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       623  (0.0455676); expected 273.4 (0.02)
Passed bias filter:                      510  (0.0373025); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:01.24
# Mc/sec: 815.53
//
Query:       MMETSP0890-20130614|27178_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-13   48.7   3.9    7.5e-13   47.9   2.7    1.5  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   2.7   5.5e-17   7.5e-13       1      31 []     191     220 ..     191     220 .. 0.94

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 5.5e-17
                  ---SEEE.E.E----EEEEETTT--EESS-- CS
   PF00397.21   1 lppgWeersddddGrvYYyNheTgetqWekP 31 
                  lppgWee++ +d Gr+YY++h+T++t+W++P
  MMETSP0890-20130614|27178_1 191 LPPGWEEKVAPD-GRTYYVDHNTRTTHWDRP 220
                  8*****888678.*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 804.75
//
Query:       MMETSP0890-20130614|27202_1  [L=1119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-21   74.4   0.0    1.3e-10   40.8   0.0    2.9  2  PF12812.2  PDZ-like domain
    1.9e-11   43.8   2.0    6.4e-09   35.7   0.0    3.3  3  PF13365.1  Trypsin-like peptidase domain
    3.8e-09   36.1   0.1       0.12   12.1   0.0    4.5  4  PF13180.1  PDZ domain
  ------ inclusion threshold ------
      0.011   14.9   0.2       0.03   13.6   0.1    1.6  1  PF00949.16 Peptidase S7, Flavivirus NS3 serine protease
      0.025   12.9   0.0      0.025   12.9   0.0    1.7  2  PF10459.4  Peptidase S46
      0.088   12.1   0.0       0.19   11.0   0.0    1.5  1  PF00944.14 Alphavirus core protein
      0.094   11.9   1.8       0.53    9.4   0.2    2.4  2  PF01732.11 Putative peptidase (DUF31)


Domain annotation for each model (and alignments):
>> PF12812.2  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   6.8e-14   1.3e-10       2      76 ..     388     462 ..     387     464 .. 0.95
   2 !   30.6   0.0     1e-10     2e-07       4      77 ..    1002    1075 ..    1001    1076 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 6.8e-14
    PF12812.2   2 itpdrfvevaGatfhdLsyqqaRsyaipvk.gvyvseasgsfslaskekkgviitsinnkptpnLdefievlkklp 76 
                  ++pd+f+e++G+++h+Ls  + R+ ++  + gvyv+ a+  +  a+ ++++ ++t++ +  tp+Ld++ + ++k  
  MMETSP0890-20130614|27202_1 388 LNPDEFIEFGGGILHPLSFCATRNGNLDDRtGVYVAYAGFVLDAAG-VPCHSVLTTLGEFSTPDLDALESAISKFN 462
                  79**************************999************999.**********************9999865 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 1e-10
    PF12812.2    4 pdrfvevaGatfhdLsyqqaRsyaipvkgvyvseasgsf.slaskekkgviitsinnkptpnLdefievlkklpd 77  
                   +dr++ ++G  +++ +++++  ++ p+ g+y+s   +++ +  +++k + +i ++n++++ +Ld+f++ +k+l d
  MMETSP0890-20130614|27202_1 1002 TDRVILWCGLLLQA-PHRAVIEMGAPSTGIYASYYLYGSpASFYTIKACRFIREVNGQQVHDLDDFVQAVKNLSD 1075
                   699***********.*************99999876554144466***************************976 PP

>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   3.3e-12   6.4e-09       1     120 []      74     222 ..      74     222 .. 0.78
   2 ?   -1.9   0.0       1.4   2.7e+03       6      62 ..     375     434 ..     369     580 .. 0.60
   3 !    5.3   0.7    0.0085        17       1      66 [.     625     740 ..     625     807 .. 0.60

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 3.3e-12
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x.xxxxxxxxxxxxxxxxxxxxxxxx RF
    PF13365.1   1 gtGfvv.nkdglilTnaHvveparkgkghrasevrvvsldgrkedhkakvvkvsaeqlDlAllqve.....................................sedivgkggvkagsksssskqstkgnrvli.......i.tdaathpGsSGgPvldsdGrvvGl 120
                  +tGfvv +++g+ilTn+Hv+           ++ +  +++ ++     +++++++  +D+ ++  +                                     ++  +g  ++  ++ +   +++       +       +    +t++GsSG+Pvld  Gr v+l
  MMETSP0890-20130614|27202_1  74 ATGFVVdAERGIILTNRHVIGL-------GPIRAEAIFINKEEAS--LTPLYRDPV-HDFGFFHYDpnklkytadkvravvlapeaakvgleirvvgndsgekVSILSGTLARLDRNAPFYNNEG-------YndfntfyYcAASNTSGGSSGSPVLDCYGRAVAL 222
                  69****66667*********95.......8899999999999988..9*******9.***************************99999999988866665443333333333333333333333.......2444445368899999***************997 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
                  xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
    PF13365.1   6 vnkdglilTnaHvveparkgkg..hrasevrvvsldgrk.edhkakvvkvsaeqlDlAll 62 
                  +n d+lil n H ++p+++ +       ++ ++ + +++ +d+ +  v++ +  lD A +
  MMETSP0890-20130614|27202_1 375 INMDKLILHNLHALNPDEFIEFggGILHPLSFCATRNGNlDDRTGVYVAYAGFVLDAAGV 434
                  666777777777777776655455222233333333333122223333333333444444 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0085
                  xxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................................x RF
    PF13365.1   1 gtGfvvnkdg.lilT.naHvveparkgkghrasevrvvsldgrkedhkakvvkvsaeqlDlAllqve...........................................................s 66 
                  gtG+vv+ ++ l+    + vv            e +v+++ + + +  ak+v +++  +++Al+q +                                                            
  MMETSP0890-20130614|27202_1 625 GTGVVVDAKRgLVAVdRNTVVT--------SLGEATVTFAASVEIP--AKIVFAHPT-HNFALVQYDpstfslssspngskvntslsnntkkkeqssitlpttrkrevptgaklesrelevgdeltF 740
                  6787774443344442455555........5667788888888889..********9.*********999988888877777777666666666666666666666666666665555555554440 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0     0.006        12      28      78 ..     320     377 ..     289     379 .. 0.73
   2 ?   -1.3   0.0      0.93   1.8e+03      23      52 ..     723     752 ..     694     760 .. 0.73
   3 !   12.1   0.0   6.1e-05      0.12      25      77 ..     939     988 ..     914     992 .. 0.82
   4 !   12.0   0.0   6.8e-05      0.13      37      69 ..    1051    1083 ..    1021    1092 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.006
    PF13180.1  28 akaglkpGDiilkvdgkkvksltdlkslll..kkkpGd.....tvkltvlRdgkkktv 78 
                  +++ l +GD +l++++++  + +dl+  l+    ++++     tv+ t++R+gk+ ++
  MMETSP0890-20130614|27202_1 320 KQQRLDVGDALLQLGDTEFPDFDDLEATLDqyDLSENSekkifTVSCTIERGGKTINM 377
                  344499*************888888855552222333333344788899999988765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.93
    PF13180.1  23 essPaakaglkpGDiilkvdgkkvksltdl 52 
                   +   + + l +GD+++ v+  + +s++ l
  MMETSP0890-20130614|27202_1 723 TGAKLESRELEVGDELTFVGLSRTNSDQPL 752
                  555566677999999999988887777655 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 6.1e-05
    PF13180.1  25 sPaakaglkpGDiilkvdgkkvksltdlkslllkkkpGdtvkltvlRdgkkkt 77 
                  s   ++ ++ GD il+vdg++  +  d+++++   +  ++v ltv Rdg  k+
  MMETSP0890-20130614|27202_1 939 SNLGDERVREGDLILAVDGHTCCTFGDVETYV---RDSESVALTVWRDGVAKD 988
                  4455566788**********************...66689********98776 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 6.8e-05
    PF13180.1   37 iilkvdgkkvksltdlkslllkkkpGdtvkltv 69  
                    i +v+g++v++l+d+++++ + + G++v+l+ 
  MMETSP0890-20130614|27202_1 1051 FIREVNGQQVHDLDDFVQAVKNLSDGESVRLKT 1083
                   5889**************************985 PP

>> PF00949.16  Peptidase S7, Flavivirus NS3 serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.5e-05      0.03      75     123 ..     184     232 ..     161     238 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.5e-05
   PF00949.16  75 yhgkeyqlyGkglglvdldlpkGsSGSpilnknkkivglYgnglevgne 123
                  y+++ y  + + +   + + ++GsSGSp+l+  +  v+l  +g  + ++
  MMETSP0890-20130614|27202_1 184 YNNEGYNDFNTFYYCAASNTSGGSSGSPVLDCYGRAVALNAGGATHSSA 232
                  566666666666778899********************99888877644 PP

>> PF10459.4  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.4       1.7   3.4e+03     404     444 ..      13      50 ..       4      62 .. 0.44
   2 ?   12.9   0.0   1.3e-05     0.025     623     670 ..     196     243 ..     179     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.7
    PF10459.4 404 reegyqerdlerleksleriekdydaevdkavlaalLeeya 444
                   +++  +++++   k++    +++ ++ +  v++a+Le++ 
  MMETSP0890-20130614|27202_1  13 AKNKKSRHKKP---KKTRVLSATTTKKEEDSVWEAMLEQVL 50 
                  11111111111...112222244555556666666666655 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.3e-05
    PF10459.4 623 nFlstnDitGGNsGSPvlnakgeLvGlaFDgnieslagdylfdpelqR 670
                   +++  ++ GG sGSPvl+  g+ v l+  g  +s a+ yl  + ++R
  MMETSP0890-20130614|27202_1 196 YYCAASNTSGGSSGSPVLDCYGRAVALNAGGATHSSASYYLPLKGVKR 243
                  5788899***************************99998876666665 PP

>> PF00944.14  Alphavirus core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.7e-05      0.19     102     131 ..     202     231 ..     176     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.7e-05
   PF00944.14 102 vGgkGdsGrpildnkGkvvaivlGGanega 131
                    + G sG p+ld  G+ va+  GGa  ++
  MMETSP0890-20130614|27202_1 202 NTSGGSSGSPVLDCYGRAVALNAGGATHSS 231
                  455699*******************98776 PP

>> PF01732.11  Putative peptidase (DUF31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00027      0.53     333     373 ..     184     224 ..     162     225 .. 0.80
   2 ?    1.1   0.0     0.087   1.7e+02      69     126 ..     551     715 ..     547     765 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00027
   PF01732.11 333 ykekkytnyGlgyllknsalsgGaSGSlvrnkdnklvGIyf 373
                  y+++ y  +   y    s+ sgG+SGS+v++ ++  v+ + 
  MMETSP0890-20130614|27202_1 184 YNNEGYNDFNTFYYCAASNTSGGSSGSPVLDCYGRAVALNA 224
                  666778888888999999**************999998875 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.087
   PF01732.11  69 lrnandkesretynkkd............................................................................................................alkgktksfslgklnqdnplkqtlntnnedknttklvfisk 126
                  l n+n+++ r++++++                                                                                                               ++++ +fsl+++ + ++++++l++n  +k++++  ++++
  MMETSP0890-20130614|27202_1 551 LGNKNNTSHRQKNKNTGqdktlpissivppespasatfqrtcgepaanaivsslckvsfdvlhaidgvvdwhfagtgvvvdakrglvavdrntvvtslgeatvtfaasveipakivfahpthnfaLVQYDPSTFSLSSSPNGSKVNTSLSNNT-KKKEQSSITLPT 715
                  666666555555544436666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777767888889999999999999999999988.555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.65u 0.38s 00:00:02.02 Elapsed: 00:00:00.93
# Mc/sec: 2883.36
//
Query:       MMETSP0890-20130614|27220_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-41  141.2   0.0    2.2e-41  140.9   0.0    1.1  1  PF01137.16 RNA 3'-terminal phosphate cyclase


Domain annotation for each model (and alignments):
>> PF01137.16  RNA 3'-terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   0.0   1.6e-45   2.2e-41       7     226 ..       2     338 ..       1     340 [. 0.93

  Alignments for each domain:
  == domain 1    score: 140.9 bits;  conditional E-value: 1.6e-45
                  -----HHHHHHHHHHH----EEE-STT---------HHHHHHHHHHHHH---EEE--------EEEE.-.---..----EEEE------HHHHHHHHHHHHT...T----EEEEEE----BTTS--HHHHHHTHHHHHHH---EEEEEE-----TT-----EEEEEE--S------..................................................................................................................--B--HHHHHHHHHHHH---..--EEESS--H.HHHHHHHHHHHHSS-EEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
   PF01137.16   7 egGgqilrtalalsalsgkpvrieniRanrskpGLkrqhlsavrllakitnaeveglelgsteleFe.P.gki..kggeyevdigtagsitlvlqtllplll...fakeplkitlkGgTdvkkapsvdylkevtlpllekfgieaelkvlkrGfyPeGgGevlltvepvkslkaik..................................................................................................................aavDehladqlillmaLaggdvsevrvgeltl.hlktnlrviekflgvkfei 226
                  egGgq++r a +l++    +v+  +iRa+r+k GLk+qhl+a+rl+++i  a+++g+ +gste+  e P ++i   + ey vd gtag+ tl+lq+ lp+l+   + ++++++ l GgT+ +++ps+d+   v+ p l+ fg+  ++++++rGf PeGgG  ++  + +++++ ++                                                                                                                  a vD+++adql ++ma+  + + ++r +  t+ hl+t+l+ +++f+g+k+++
  MMETSP0890-20130614|27220_1   2 EGGGQVVRMACSLAL---GSVSLIKIRAGREKGGLKAQHLAALRLVSDIRCATLSGDAVGSTEVHIEiPfENIppLKSEYIVDAGTAGATTLILQAALPALArriVPQQNVSLVLYGGTNTRFSPSADHAAYVLAPNLRFFGLFLRVDIQRRGFFPEGGGCLRIDLTKIEPTP-FSwsghsaepltvlalfagrgfttlaqeefvrtiaanlqdilhstfssltavdvrfnlikskssknrkpslaiqlalttssgatlgvdelienksalsydpallvarlehklrhagAGVDDQTADQLATFMAFLPN-STSLRCPIPTClHLETVLHFASRFTGAKYNM 338
                  8*******9998887...469999***************************************98653675562145699*******************99633267999*********************************************************999998.888999**************************************************************************************************************9******************9.557777766656***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.84
# Mc/sec: 1015.60
//
Query:       MMETSP0890-20130614|27232_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-65  219.4   1.1    6.4e-65  219.1   0.8    1.0  1  PF00294.19 pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.8   4.7e-69   6.4e-65      12     296 ..      72     375 ..      62     379 .. 0.95

  Alignments for each domain:
  == domain 1    score: 219.1 bits;  conditional E-value: 4.7e-69
                  EECEECHCCH...S..B-E-SEEEEE------HHHHHHHH--.....--EEEEEEE--TT.-HHHHHHHHTTTEEETTEEESSS-EEEEEEEEE-TTCEEEEEEE---GGGHHHHHH....HHCHCHHTTEEEEHHEEE-SSSHHHHHHHHHHHHHHTT.EEECCCCCT--...HHCHHHHCSEESEECCCHHHHHHHCCSSH.....HCHHHHHHHHHHHHH-T-SEEEEB------EEEE..SS--EEE--.-SS--SB-TT---TTT--HHHHHHTT--HHHHHHHHHHHHHHHHT----GG CS
   PF00294.19  12 idliardekl...ekelvevktvekgaGGagaNvavalarlg.....gevafigavGddkfgeflleelkkegvdtdyvkideetrtglalilvdgdgertivfnrgaaadltpeel....pedllaeadvlylsgallseplpeatlealieaaknngkfdpnlrdplwsq.aleklrellpladilkpNeeEaealtgekd.....ndveevlaalhklkakgaktvvvtlGkdGallve..kdgevhvppvpkvkvvDttGAGDafvagflagllagksleealrlanavaalvvqkagais 296
                   d+i+++ek+   ++el   +++e+ aGGa++N++++ a++      + vaf g+vG d+ ++ l ++ +++gv ++y++ d++t+tg++++l+d+++ert+++ + aa+++ +++l     + ll +a+++y +g +l ++ p+ t  + +++ k+++ + +nl++p+++q ++++l++ +p++dil++Ne+Ea++l ++k+     + ++  +aa++k   ++a++vv+t+G++ +++++   +++++vppv+k k+vDt+GAGDa+v+gfl+ ++  +s+e ++++++++aa ++q++g++ 
  MMETSP0890-20130614|27232_1  72 GDIILAEEKHfgvYDELAAKEETEYIAGGATQNSMRVCAWMLkgkreNAVAFAGCVGEDDQAKKLQDCAADAGVTVAYMH-DKTTPTGVCACLIDDTNERTLITRLDAANNYAKSHLesdeLQTLLLSAKLVYSAGFFLTSGGPDCTKLLGEHCVKYHKRYCLNLSAPFIAQfFMSQLDATMPYVDILFGNETEAATLGEQKGwgsdlKVIALNAAAMPKASGTYARIVVITQGAQATIVAQsnTVTTYPVPPVQKAKIVDTNGAGDAMVGGFLSRFVLDESIENCVKAGHWAAATIIQRSGCTM 375
                  59999***************************************************************************.9999**********88**********************99999************888888888888888999*************************************************99999999999999999888888****************999*********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.78
# Mc/sec: 1188.96
//
Query:       MMETSP0890-20130614|27231_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-06   26.2   0.0    8.1e-06   25.3   0.0    1.4  1  PF00293.23 NUDIX domain
     0.0039   16.4   2.9      0.011   15.1   2.0    1.8  1  PF07145.10 Ataxin-2 C-terminal region
  ------ inclusion threshold ------
        1.5    6.3   6.6          2    5.8   4.5    1.1  1  PF05758.7  Ycf1


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.8e-09   8.1e-06      30      67 ..     309     346 ..     285     398 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.8e-09
                  EEEESBEEETTTTSHHHHHHHHHHHHHHS-EEEEEEEE CS
   PF00293.23  30 glwefPgGkvdkgEspeeaAvRElkEEtGidlekvrlv 67 
                  + + +PgGk  + E+++eaA+REl  EtG+ l  v+ +
  MMETSP0890-20130614|27231_1 309 VSIDLPGGKRHLAETAWEAAARELHDETGLILDRVHED 346
                  56789**************************9666554 PP

>> PF07145.10  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.0   2.4e-06     0.011       4      15 ..      11      22 ..       8      22 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-06
   PF07145.10  4 SkLNPnAkEFVP 15
                 S LNP+AkEFVP
  MMETSP0890-20130614|27231_1 11 SPLNPSAKEFVP 22
                 66*********9 PP

>> PF05758.7  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.5   0.00045         2     205     286 ..     361     443 ..     347     447 .] 0.53

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00045
    PF05758.7 205 llfitcllylgriPspiltkklkelseieer..seeekkkeieaesekkrakqeqeee.eeedsslaseekedkdkideqeekkv 286
                  + f ++  y++  ++ ++ ++    +  e+   + e+++++++++ e+k ++ e+++e +++  + ++ ek+d +  +e++++++
  MMETSP0890-20130614|27231_1 361 I-FFCTSQYIDGQSVRFFVMAPPTIATEEKAveEAEQTSVNKDEQVEEKIDETENDNEgNDK-DNKMNTEKKDIETEQESKKEEQ 443
                  4.444555666666667767775555444443333444444455555555555555553333.4444566666555444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1174  (0.0858689); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.63s 00:00:01.23 Elapsed: 00:00:00.85
# Mc/sec: 1260.20
//
Query:       MMETSP0890-20130614|27252_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.48s 00:00:00.67 Elapsed: 00:00:00.54
# Mc/sec: 261.82
//
Query:       MMETSP0890-20130614|27255_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   14.3   0.2      0.036   13.2   0.0    1.5  2  PF00103.15 Somatotropin hormone family


Domain annotation for each model (and alignments):
>> PF00103.15  Somatotropin hormone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0     0.099   1.4e+03     157     182 ..       9      34 ..       4      39 .. 0.72
   2 ?   13.2   0.0   2.6e-06     0.036     118     156 ..      51      89 ..      45      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.099
                  ---------------..-----HHHH CS
   PF00103.15 157 keneeepawsklsslkssdederlla 182
                  + ++++  w+kl+   ++ded +l++
  MMETSP0890-20130614|27255_1   9 DAKQQNWFWEKLAIAFNEDEDPELTK 34 
                  45667777888888888888877765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.6e-06
                  GGSSS------TTTGGGHHHHHH---TTT---------- CS
   PF00103.15 118 lkevsetilskakeleeklkeLlegierilskvedesek 156
                  ++e ++ ++ +a++l++k  +L+ +i++ ++k++++++ 
  MMETSP0890-20130614|27255_1  51 VPERPDGLIVSASMLKDKHTKLRTVIQKAMNKFQVTGNG 89 
                  57889999**************************77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.42s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 329.93
//
Query:       MMETSP0890-20130614|27260_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-09   35.7   0.0    1.4e-08   34.5   0.0    1.6  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
     0.0098   16.4   0.0       0.37   11.4   0.0    2.4  2  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.05   13.9   0.0       0.73   10.3   0.0    2.6  2  PF13174.1  Tetratricopeptide repeat
      0.051   13.1   3.9       0.16   11.5   1.1    2.3  2  PF13414.1  TPR repeat


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0     4e-12   1.4e-08       7      93 ..      24     113 ..      18     114 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4e-12
                  CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT......S.TT-EEEEEEEE CS
   PF00254.23   7 egdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk......ippnatlvfevel 93 
                    + V +  egkl   gt f++     +   ++vG+g+v +gle gl ++++G k++++     aYge g  g+k      ipp+a++++ +++
  MMETSP0890-20130614|27260_1  24 YKQAVICSLEGKLIsCGTIFEKF----ERKMLRVGDGDVPPGLELGLRQLREGTKCQVRAEWRFAYGEHGRPGSKeentmaIPPKAQVEWSIKC 113
                  55667788888988569999999....77789************************************8887766888889**********997 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.067   2.3e+02       3      27 ..     140     164 ..     140     179 .. 0.86
   2 !   11.4   0.0   0.00011      0.37      23      64 ..     208     249 ..     191     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.067
    PF13432.1   3 lArallraGdydeAlaaleaalala 27 
                  l+++ + + ++++A+  ++++l++ 
  MMETSP0890-20130614|27260_1 140 LGNEHFHHENWRKAASNYQDILKNL 164
                  578888999************9986 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00011
    PF13432.1  23 alalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                  +l  aPe+  al++  ++ l+l++++e+ a+l+ a++ +P++
  MMETSP0890-20130614|27260_1 208 VLTVAPENKKALYRAIQISLHLSKWPESQAALQIAIEKWPNS 249
                  67788*********************************9986 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27   9.4e+02      15      29 ..     149     163 ..     139     166 .. 0.86
   2 ?   10.3   0.0   0.00021      0.73       2      33 .]     218     249 ..     217     249 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.27
                  HHHHHHHHHHHHHHH CS
    PF13174.1  15 dtdeAlealerlike 29 
                  ++++A   +++++k+
  MMETSP0890-20130614|27260_1 149 NWRKAASNYQDILKN 163
                  899********9997 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00021
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealerlikeyPdS 33 
                  Aly++ ++ + l ++ e+ +al+  i++ P+S
  MMETSP0890-20130614|27260_1 218 ALYRAIQISLHLSKWPESQAALQIAIEKWPNS 249
                  99****9999999******************9 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   4.6e-05      0.16       2      50 ..     133     195 ..     132     213 .. 0.72
   2 ?    0.8   0.0       0.1   3.4e+02      13      36 ..     226     249 ..     214     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.6e-05
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAle.ldpnnae.............lyynlAlaylkl 50 
                  +A   k lGn++f+  ++ +A   y+  l+ l+p n +             + +nl  a++kl
  MMETSP0890-20130614|27260_1 133 DARNKKILGNEHFHHENWRKAASNYQDILKnLNPWNYQeeerneaetlyvdCGNNLVIALIKL 195
                  788899***********************8677744333555555566666666666666655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.1
    PF13414.1  13 lfkegdydeAieayekAleldpnn 36 
                   +++ ++ e+ +a++ A+e +pn+
  MMETSP0890-20130614|27260_1 226 SLHLSKWPESQAALQIAIEKWPNS 249
                  567889999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1182  (0.0864541); expected 273.4 (0.02)
Passed bias filter:                      573  (0.0419105); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:01.19
# Mc/sec: 682.66
//
Query:       MMETSP0890-20130614|27267_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-11   42.0   0.0    1.2e-10   41.2   0.0    1.4  1  PF00089.21 Trypsin
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.12   12.2   0.0    1.2  1  PF13365.1  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.8e-14   1.2e-10      25      84 ..       2      79 ..       1      81 [] 0.81

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.8e-14
                 EEE-EEEEETTEEEEEGGGGTS.......GGGEEEEEECBBTTSCTTT...........TEEEEEEEEEEETTEBTTT CS
   PF00089.21 25 hlCgGslisenwvLTAaHcvkn.......asdvkvvlgehnlkksegk...........eqklkvekvilhpnynpst 84
                 h+CgGsli++++vLTAaHcv++       ++++ v++g ++l  ++++            qk++v+++ +hp+y++ t
  MMETSP0890-20130614|27267_1  2 HFCGGSLIDASIVLTAAHCVNDfdasvldTRRFYVIIGLTSLDDWDSEafvlsdgnrytPQKIYVSRINIHPEYDDTT 79
                 8***********************9999966666666666666666555555555577789*************9877 PP

>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.12       3      28 ..       6      33 ..       4      78 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxx....x RF
    PF13365.1  3 GfvvnkdglilTnaHvveparkgkg....h 28
                 G +++ + ++lT+aH+v++ + + +    +
  MMETSP0890-20130614|27267_1  6 GSLIDAS-IVLTAAHCVNDFDAS-VldtrR 33
                 7789999.*********975433.335551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|27264_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-31  106.5   1.7      5e-31  106.4   0.1    1.8  2  PF00647.14 Elongation factor 1 gamma, conserved domain
    8.9e-16   57.5   0.0    8.9e-16   57.5   0.0    2.2  3  PF00043.20 Glutathione S-transferase, C-terminal domain
      1e-09   37.9   0.1    2.1e-09   36.9   0.1    1.4  1  PF13410.1  Glutathione S-transferase, C-terminal domain
    6.9e-05   22.8   0.0     0.0002   21.3   0.0    1.8  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    0.00038   20.5   0.0     0.0012   18.9   0.0    1.9  1  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.023   14.5   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
        1.8    7.1   7.7        2.6    6.6   5.4    1.2  1  PF10310.4  Protein of unknown function (DUF2413)
        3.7    7.2   8.8        5.4    6.7   6.1    1.1  1  PF06459.7  Ryanodine Receptor TM 4-6
        7.8    7.3  10.9        2.9    8.7   1.4    2.4  2  PF11983.3  Domain of unknown function (DUF3484)


Domain annotation for each model (and alignments):
>> PF00647.14  Elongation factor 1 gamma, conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.6   5.5e+03      16      32 ..     179     195 ..     165     199 .. 0.69
   2 !  106.4   0.1   3.3e-34     5e-31       5     106 ..     230     337 ..     226     338 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.6
   PF00647.14  16 ldewKreYsnedtreka 32 
                   d+ K++ +ne++++++
  MMETSP0890-20130614|27264_1 179 KDDTKKKEKNEKKKKAE 195
                  47888888888886655 PP

  == domain 2    score: 106.4 bits;  conditional E-value: 3.3e-34
   PF00647.14   5 pldalpk...skfnldewKreYsnedtrekalpyfwehfdkegyslwkvkykyeeelklefmtsNliggflqRlekvrkyafgvvlvfGednn....seisgvwllrGq 106
                  p++ + k   s+f  d wK+ Ysn+   ++a+++fwe fd++g+slw ++yky++e++++fmt+Nl+ggf+qR  ++rk+afg + v+G+++n    +e+sg+wllrGq
  MMETSP0890-20130614|27264_1 230 PYKIMDKeqpSEFIGDVWKKIYSNNPA-DVAMKQFWEMFDPKGWSLWLCRYKYNKENTKQFMTANLVGGFVQRSGEIRKWAFGLMFVTGSEENgpepIEVSGLWLLRGQ 337
                  554444333399999**********99.9************************************************************9976444489*********9 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   5.9e-19   8.9e-16      18      92 ..      70     147 ..      34     150 .. 0.85
   2 ?   -1.3   0.5       1.3     2e+03      20      35 ..     178     193 ..     161     204 .. 0.60
   3 ?   -3.1   0.0       4.9   7.4e+03       3      21 ..     257     282 ..     256     289 .. 0.53

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 5.9e-19
                  ...HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTT.HTT-HHHHHHHHHHH CS
   PF00043.20  18 a..aekdeaeveeakrkvlevlealeeelsgkkylvGdkltlADialfpalewlqrldgnfl.eeefPklkawlkria 92 
                  +  + + ++++++ak++v ++l++l+++l +k+y+vGd+ltlADi ++ al +++ l  ++  +++fP++++w++ + 
  MMETSP0890-20130614|27264_1  70 IgyMPYNATAYAKAKEHVTKALSTLDAHLLDKTYIVGDSLTLADITIASALVYPAKLAMDPSfRAQFPNVMRWFDLCV 147
                  255688999*****************************************************************9776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHHHHH CS
   PF00043.20  20 ekdeaeveeakrkvle 35 
                  +kd + ++e+++k ++
  MMETSP0890-20130614|27264_1 178 TKDDTKKKEKNEKKKK 193
                  4444444444444443 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 4.9
                  HHHHHHHHHHHSTTH........HHH CS
   PF00043.20   3 dlasdalllfyvkkea.......aek 21 
                  d+a++ ++  +++k +       +++
  MMETSP0890-20130614|27264_1 257 DVAMKQFWEMFDPKGWslwlcryKYN 282
                  55666666666666554444444444 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   1.4e-12   2.1e-09       2      68 ..      78     144 ..      77     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.4e-12
                  HHHS--GGGTT-THGGG------SS.-------HHHHHHHHHHHH.HHHHH------TT----HHHHH CS
    PF13410.1   2 aaleraraqlraaLdaleahLadgpfllGdrpslaDialapflvr.ldaagpgldireayPnlrawle 68 
                  +a++ a++++ +aL++l+ahL d++++ Gd ++laDi++a  lv+ +++a  +  +r+ +Pn+ +w++
  MMETSP0890-20130614|27264_1  78 TAYAKAKEHVTKALSTLDAHLLDKTYIVGDSLTLADITIASALVYpAKLAM-DPSFRAQFPNVMRWFD 144
                  68899***********************************99987588885.4468**********86 PP

>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-07    0.0002      47      76 .]       2      29 ..       1      29 [. 0.93

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-07
                 CTTTS-SSEEEETTTEEEESHHHHHHHHHH CS
   PF02798.15 47 npkigrvPaledgdglklteSlAIarYlar 76
                  p+ g+vP++  + + +++eS+AIarY+ar
  MMETSP0890-20130614|27264_1  2 SPL-GKVPVMSTP-SGPIFESNAIARYIAR 29
                 588.*********.88************97 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.8e-07    0.0012      42      69 ..       2      29 ..       1      35 [. 0.91

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 7.8e-07
                 -TT--SSEEE----EEESHHHHHHHHHH CS
    PF13417.1 42 npkgkvPvLeddgevltdSlvIieyLee 69
                 +p+gkvPv+ ++ +++++S +I++y+ +
  MMETSP0890-20130614|27264_1  2 SPLGKVPVMSTPSGPIFESNAIARYIAR 29
                 79***********************976 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05     0.023      41      68 ..       2      28 ..       1      30 [. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-05
                 ------SEEE.----EEESHHHHHHHHH CS
    PF13409.1 41 sprgtVPvLwdkdgtvineSseIlryln 68
                 sp g+VPv+ ++    i+eS +I+ry++
  MMETSP0890-20130614|27264_1  2 SPLGKVPVMSTPS-GPIFESNAIARYIA 28
                 89********875.6***********97 PP

>> PF10310.4  Protein of unknown function (DUF2413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.4    0.0017       2.6      57     136 ..     178     254 ..     158     293 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
    PF10310.4  57 ekaetprvekkkskkkesekaskeekeakprkseeseesseekskapeteseeeeeeeetpepiasiggwWsWgsilsta 136
                   k +t++ ++k++kkk+ ek++ e+ke++p+ + + +    ++++ap++++e+  +  ++++p++ ig  W   +i s+ 
  MMETSP0890-20130614|27264_1 178 TKDDTKK-KEKNEKKKKAEKPAVEKKEKAPAPTPAPAPAPTPAPEAPKKKTEHPYKIMDKEQPSEFIGDVWK--KIYSNN 254
                  2223333.5555555556666667777777777777777778888888888888889999999999999996..555543 PP

>> PF06459.7  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.1    0.0036       5.4      73     156 ..     167     251 ..     156     260 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0036
    PF06459.7  73 epeepptpeeaaaekkelkeeeeepkseaekadledgekeekaeeeseekpeeakaakkkaekk..kekkaekeeaaeaeifkele 156
                  +p   p+p  a++   ++k+e++e+k++aek  +e+ ek    ++ +   p  a +a+kk++++  k   +e++ ++  +++k++ 
  MMETSP0890-20130614|27264_1 167 TPAGAPAPPAATKDD-TKKKEKNEKKKKAEKPAVEKKEKAPAPTPAPAPAPTPAPEAPKKKTEHpyKIMDKEQPSEFIGDVWKKIY 251
                  444445544444444.3678999999999999999999966666666666666666666665551156677777888888998865 PP

>> PF11983.3  Domain of unknown function (DUF3484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   3.0      0.25   3.8e+02       7      60 ..     153     196 ..     147     206 .. 0.40
   2 ?    8.7   1.4    0.0019       2.9      18      71 ..     202     251 ..     196     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.25
    PF11983.3   7 aAvtGeevlrrkpvdfstptfeqstapaptvpyeqpqkqpteesaeeqeqkepk 60 
                  +Av Ge  l+ k+ + + + + +  ++ +t ++e+ +k+          +k++k
  MMETSP0890-20130614|27264_1 153 IAVIGEVNLAEKECTPAGAPAPPAATKDDTKKKEKNEKK----------KKAEK 196
                  678888888888833322222222222222222222211..........22222 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0019
    PF11983.3  18 kpvdfstptfeqstapaptvpyeqpqkqpteesaeeqeqkepkekltdrvkgfF 71 
                  k+   + p  ++ +apapt+ +e+p+k+++  ++   ++++p e ++d  k + 
  MMETSP0890-20130614|27264_1 202 KE---KAPAPTPAPAPAPTPAPEAPKKKTEHPYKI-MDKEQPSEFIGDVWKKIY 251
                  44...5667789999**********9999999998.789999998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       846  (0.0618783); expected 273.4 (0.02)
Passed bias filter:                      546  (0.0399356); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.81
# Mc/sec: 1162.68
//
Query:       MMETSP0890-20130614|27319_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       120  (0.00877706); expected 273.4 (0.02)
Passed bias filter:                      111  (0.00811878); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.31s 00:00:00.57 Elapsed: 00:00:00.60
# Mc/sec: 123.81
//
Query:       MMETSP0890-20130614|27314_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-13   48.3   0.0    1.5e-12   47.4   0.0    1.5  1  PF12830.2 Sister chromatid cohesion C-terminus
  ------ inclusion threshold ------
       0.11   10.7   0.4       0.16   10.1   0.3    1.1  1  PF03276.9 Spumavirus gag protein
       0.11   12.6   7.6       0.13   12.4   0.1    3.1  2  PF13646.1 HEAT repeats
       0.12   12.8   0.1       0.12   12.8   0.1    3.4  4  PF13513.1 HEAT-like repeat
       0.93    9.7   4.7       0.85    9.8   1.6    2.2  2  PF10404.4 Rad4 beta-hairpin domain 2


Domain annotation for each model (and alignments):
>> PF12830.2  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   5.6e-16   1.5e-12      39     188 ..       1     142 [.       1     143 [. 0.91

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 5.6e-16
    PF12830.2  39 GLvnPkecvptliALetdpnpsirklAlellkeldekheslvesrlaeGvklafdlqkrlssdeleaakgvreesavlsslytllr.snkksrkkflksllklfdedstkeseesakselefllFlaenlAllpYqtqeEvlfvihhidri 188
                  GL+nP+e+v+ l A  +d+++  r++Al+ l++++ +++s+v sr+  G+ la d   +   +             vl++ y  l   + k+r   l s++ lfd++   +s ++  + +   +  a  lAllp ++qe++lf+++hi ri
  MMETSP0890-20130614|27314_1   1 GLLNPREAVSELLAALSDSDSGCRTIALDSLTKIHARRPSFVTSRFFHGLALALDATSDETAHI---------VLPVLARTYAKLIlPDAKTRAGVLRSIIELFDTQPPSTSAQAMATWIRSRRRAARLLALLPASSQEDPLFILYHIGRI 142
                  9****************************************************99988633333.........45799999988888*********************8888777888888899999*********************998 PP

>> PF03276.9  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   5.7e-05      0.16     417     503 ..     245     330 ..     240     343 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.7e-05
    PF03276.9 417 qilnevYeiLGLnarGqsirslaqseqqrpasrgrGrgqrgrrsqpqeerrqqnsgrrssqpqrqqqdrsnqnnqrqsqvqnegerg 503
                   +ln+  ++  L+++G+ + ++  s++++++ r++  ++    + + + +++  + r++++ ++++q  ++ + q  s +++ ++r+
  MMETSP0890-20130614|27314_1 245 VVLNDFNTLFDLDILGRVLSTVKSSRTTTSKRRSKAIENDDSDDDQ-HVKKSPSKVRKRRTVKKKEQPVKKRKAQASSTITSTTKRA 330
                  6899999*************77666666666666666555555555.5555555666666666666655666666666666555544 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.6e-05      0.13      27      60 ..       3      36 ..       1      69 [. 0.80
   2 ?    1.0   2.4      0.17   4.6e+02      17      56 ..     114     169 ..      70     190 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.6e-05
    PF13646.1 27 lgseealpaLlelLkdsdpevRraAaeaLgklgd 60
                 l+ +ea+ +Ll++L+dsd+  R  A+ +L k+  
  MMETSP0890-20130614|27314_1  3 LNPREAVSELLAALSDSDSGCRTIALDSLTKIHA 36
                 67789*************************9963 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.17
    PF13646.1  17 raaaieaLgqlgseea................lpaLlelLkdsdpevRraAaeaLg 56 
                  r++a+++L+ l  ++                  +a l+ L+++++ v++aAa a g
  MMETSP0890-20130614|27314_1 114 RRRAARLLALLPASSQedplfilyhigrilsvHAAALRELDSQEAPVQAAAAAAFG 169
                  66666666644333222223333333333333444444456667777777777766 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.4e-05      0.12      24      55 .]       7      34 ..       3      34 .. 0.75
   2 ?   -2.3   0.1       2.5   6.9e+03      36      51 ..      77      90 ..      51      94 .. 0.53
   3 ?    0.3   2.4      0.37     1e+03      26      53 ..     146     169 ..     112     171 .. 0.65
   4 ?    2.1   0.2       0.1   2.8e+02       2      15 ..     159     172 ..     158     183 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.4e-05
    PF13513.1 24 pavpellpaLlelLedddd.eVReaAawALgrl 55
                 +av ell+aL+     d+d  +R++A+ +L+++
  MMETSP0890-20130614|27314_1  7 EAVSELLAALS-----DSDsGCRTIALDSLTKI 34
                 45666666666.....6666**********987 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.5
    PF13513.1 36 lLeddddeVReaAawA 51
                  L  +d+++R+ ++++
  MMETSP0890-20130614|27314_1 77 IL--PDAKTRAGVLRS 90
                 22..555666666555 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.37
    PF13513.1  26 vpellpaLlelLedddd.eVReaAawALg 53 
                  + ++l  L      + +  V++aAa A+g
  MMETSP0890-20130614|27314_1 146 HAAALRELD-----SQEaPVQAAAAAAFG 169
                  455566666.....666688888888887 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.1
    PF13513.1   2 rvRraAawaLGrla 15 
                  +v++aAa+a+G l+
  MMETSP0890-20130614|27314_1 159 PVQAAAAAAFGLLL 172
                  89999999997544 PP

>> PF10404.4  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   4.8e+03      25      46 ..     267     287 ..     265     293 .. 0.65
   2 ?    9.8   1.6   0.00031      0.85       9      32 ..     300     323 ..     294     340 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.8
                  E-..........---------- CS
    PF10404.4  25 ksralqarikqltrarewflsk 46 
                  ks +++  +k+  +a e+++s+
  MMETSP0890-20130614|27314_1 267 KS-SRTTTSKRRSKAIENDDSD 287
                  55.5666777777777766554 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00031
                  T---EE------SEEEE-...... CS
    PF10404.4   9 segRvikageqPlKkvksralqar 32 
                  +++R++k+ eqP+Kk k++a    
  MMETSP0890-20130614|27314_1 300 RKRRTVKKKEQPVKKRKAQASSTI 323
                  679*************99887443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       934  (0.0683148); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.96
# Mc/sec: 888.65
//
Query:       MMETSP0890-20130614|27331_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-08   32.3   0.7    5.5e-08   32.2   0.5    1.0  1  PF01040.13 UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.5     4e-12   5.5e-08     144     229 ..      10     102 ..       3     104 .] 0.75

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4e-12
   PF01040.13 144 iplpllllalllfllalallltndirDvegDraaGirtlpvrl.grkatly.alllaaalla......tallllllaplllllavalaalallr 229
                  +++ ++++a ++ ++a++++ t d++Dv+gD++ G  t++ +l   + + y  l+la+ + +       +  ++ +  + +++ +a++a +l+ 
  MMETSP0890-20130614|27331_1  10 WNPGVVFMARFMTVFAAVIAVTKDLPDVDGDKKYGFETFATKLgAPRVAGYaCLALALNY-VsailegAFSPYGSFNKFQMIFGHAFLANQLAQ 102
                  46778888888888888888888********************54444444433333333.347779988889999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.59
# Mc/sec: 422.41
//
Query:       MMETSP0890-20130614|27334_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   25.7   5.7    2.2e-05   23.7   3.0    2.5  2  PF09282.5 Mago binding
  ------ inclusion threshold ------
        1.3    8.9   6.1       0.33   10.8   2.0    1.6  2  PF05103.8 DivIVA protein


Domain annotation for each model (and alignments):
>> PF09282.5  Mago binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   3.0   3.2e-09   2.2e-05       5      23 ..      21      39 ..      20      40 .. 0.94
   2 ?    0.1   0.0     0.082   5.6e+02      11      15 ..      43      47 ..      41      48 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 3.2e-09
    PF09282.5  5 IpetqRpDGsfRKeirvRp 23
                 +p+t+RpDG+ RK +r+R+
  MMETSP0890-20130614|27334_1 21 LPGTRRPDGTRRKDRRIRA 39
                 59****************6 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.082
    PF09282.5 11 pDGsf 15
                 +DGs+
  MMETSP0890-20130614|27334_1 43 ADGSW 47
                 8***9 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.42   2.9e+03      71      91 ..      80     100 ..      53     105 .. 0.50
   2 ?   10.8   2.0   4.9e-05      0.33      36      90 ..     121     175 ..     116     183 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.42
    PF05103.8  71 vaqetaeevkanakkeaelii 91 
                  v+ + a + k++a k+++l++
  MMETSP0890-20130614|27334_1  80 VQPQNAPRPKKEAPKKSSLVV 100
                  334444455555555555555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 4.9e-05
    PF05103.8  36 allkeneelkeeieeleekleeykeleeslkkslvvaqetaeevkanakkeaeli 90 
                  + ++  +el++++++l++kl++  el e+ ++ +v+  + +++++++   +ael+
  MMETSP0890-20130614|27334_1 121 ETAETEDELRKRMKNLRKKLKHIVELAEKASEGIVLDADQQDKLRRADIVQAELT 175
                  5677889*************************************99988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1078  (0.0788473); expected 273.4 (0.02)
Passed bias filter:                      746  (0.0545641); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.43s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 564.21
//
Query:       MMETSP0890-20130614|27344_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-26   92.0   0.1    3.1e-26   91.1   0.0    1.5  1  PF00867.13 XPG I-region
    1.3e-18   66.9   0.0    2.4e-18   66.1   0.0    1.4  1  PF00752.12 XPG N-terminal domain
  ------ inclusion threshold ------
      0.019   14.2   0.1      0.057   12.6   0.1    1.8  1  PF02739.11 5'-3' exonuclease, N-terminal resolvase-like domain


Domain annotation for each model (and alignments):
>> PF00867.13  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   6.8e-30   3.1e-26       2      94 .]     121     211 ..     120     211 .. 0.93

  Alignments for each domain:
  == domain 1    score: 91.1 bits;  conditional E-value: 6.8e-30
                  H----EEE-SS-HHHHHHHHHH----SEEE-SSTHHHH----EEEESCC--STTTT--SS-SCEEEEEHHHHHHHCTS-HHHHHHHHHH---T CS
   PF00867.13   2 lmgipyvvApgEAeaqcayLarsglvdavlseDsDlllfgapkvirnlskkkskkkkkkkekkvevidlekvleelgltreqfidlaillGcD 94 
                  lmg+ +++A gEAea ca+Lar+g+++a+++eD+D+l fgap +++nl+  +++  +++++k+  +i+l++vl++l+ +++ fidl+il+GcD
  MMETSP0890-20130614|27344_1 121 LMGVIVIQAAGEAEATCAALARNGMAYAAVTEDMDALTFGAPIMVKNLF--DTEGARSRSPKPAYEINLDRVLSGLNTDMSTFIDLCILSGCD 211
                  79**********************************************9..434444677888899**************************9 PP

>> PF00752.12  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.2e-22   2.4e-18      27     100 ..       1      80 [.       1      81 [. 0.90

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 5.2e-22
                  -EEEEEHHHHHHHHHHHSB.----B-BS......-TTT---HHHHHHHHH---EEEEEE-----GGG---HHHHHHHHHH CS
   PF00752.12  27 kklaiDaslwlyrfliavreqlgnalen......tshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserrqe 100
                  ++la Das+ ly+fl a+r+  g +  +      tsh++g+ +r+lrll++gikPifVFdg  p lk+ +l+ rs+r+q 
  MMETSP0890-20130614|27344_1   1 RTLALDASMALYQFLAAIRSGAGAEHLTntqgeaTSHIQGMTNRVLRLLENGIKPIFVFDGPSPRLKEATLRDRSSRKQA 80 
                  68*****************876654333377799*******************************************986 PP

>> PF02739.11  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.2e-05     0.057      21      77 ..      20      78 ..       2     168 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
   PF02739.11 21 k....keltnskgeptnavygflksllkllkeekpeyvvvvfDakkktfRkelyeeYKanR 77
                 +    ++ltn++ge t+ + g+++ +l+ll++    + + vfD  ++  +++++ +  +++
  MMETSP0890-20130614|27344_1 20 SgagaEHLTNTQGEATSHIQGMTNRVLRLLENGI--KPIFVFDGPSPRLKEATLRDRSSRK 78
                 3445579***********************9987..88999***99998888877744433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.47s 00:00:01.31 Elapsed: 00:00:01.15
# Mc/sec: 952.35
//
Query:       MMETSP0890-20130614|27370_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-09   36.4   9.0    5.6e-09   35.5   6.2    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.9e-08   33.0   2.3    2.9e-08   33.0   1.6    2.2  3  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      8e-08   31.7   9.8    1.4e-07   30.9   6.8    1.4  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
      3e-07   29.9  10.0    5.2e-07   29.1   7.0    1.4  1  PF13639.1  Ring finger domain
    4.8e-07   29.2   6.4    8.3e-07   28.4   4.4    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    4.7e-05   22.7   9.5    0.00013   21.3   4.1    2.3  2  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
      0.011   15.7   6.9      0.077   13.0   4.8    2.3  1  PF12678.2  RING-H2 zinc finger
      0.019   14.2   4.5      0.055   12.8   3.1    1.7  1  PF03854.9  P-11 zinc finger
      0.022   14.1   6.0      0.039   13.3   4.1    1.4  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.83    9.4   7.7        5.3    6.9   5.3    2.3  1  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   6.2   4.1e-12   5.6e-09       3      45 ..     239     280 ..     238     281 .. 0.93

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 4.1e-12
    PF13923.1   3 fsCpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  f C iC   +++p+ +t CgH++C++Ci+  +++++  CPiC+
  MMETSP0890-20130614|27370_1 239 FACHICRGPFRDPM-MTLCGHYFCQTCIQTRFDQTSTLCPICE 280
                  68***********7.6******************8889****7 PP

>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         3     4e+03      20      23 ..     155     158 ..     153     159 .. 0.70
   2 !   33.0   1.6   2.1e-11   2.9e-08       1      26 [.     160     185 ..     160     186 .. 0.91
   3 ?   -2.8   0.0       3.7     5e+03       4       9 ..     254     259 ..     253     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3
                  --SS CS
   PF00642.19  20 rCkF 23 
                  +C+F
  MMETSP0890-20130614|27370_1 155 TCRF 158
                  6887 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 2.1e-11
                  --S---SGGGG----------SS--- CS
   PF00642.19   1 yktelCrffartGtCpyGdrCkFaHg 26 
                  y    C++++ tG+C yGd+CkF H+
  MMETSP0890-20130614|27370_1 160 YQPDVCKDYKDTGYCGYGDSCKFLHD 185
                  56789********************7 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3.7
                  ---SGG CS
   PF00642.19   4 elCrff 9  
                   lC ++
  MMETSP0890-20130614|27370_1 254 TLCGHY 259
                  59*999 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   6.8     1e-10   1.4e-07       1      41 []     241     279 ..     241     279 .. 0.97

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1e-10
                  -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                  C+iC   + +p+ ++ C+H fC++Ci++  + ++++ CP+C
  MMETSP0890-20130614|27370_1 241 CHICRGPFRDPM-MTLCGHYFCQTCIQTRFD-QTSTLCPIC 279
                  ************.******************.88888**** PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   7.0   3.8e-10   5.2e-07       3      45 ..     241     281 ..     239     282 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.8e-10
    PF13639.1   3 CaiCldelsegeevvrlpCgHvfHeeCldewlrs.snsCPlCrk 45 
                  C iC  ++   ++++ + CgH+f+++C++  + + s+ CP+C k
  MMETSP0890-20130614|27370_1 241 CHICRGPF---RDPMMTLCGHYFCQTCIQTRFDQtSTLCPICEK 281
                  ********...789999*************9965379*****87 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   4.4   6.1e-10   8.3e-07       3      48 ..     239     284 ..     237     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.1e-10
    PF13920.1   3 ktCvvClereadvlllpCgHlclCeeCaerllk.rkkkCpiCrspie 48 
                  ++C +C+  ++d +++ CgH  +C++C +   + ++  CpiC ++ +
  MMETSP0890-20130614|27370_1 239 FACHICRGPFRDPMMTLCGHY-FCQTCIQTRFDqTSTLCPICEKQTS 284
                  57*******************.*******999879999****99865 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   4.1   9.6e-08   0.00013      11      45 ..     239     270 ..     231     278 .. 0.84
   2 ?    3.3   0.3     0.041        55      10      21 ..     273     284 ..     267     287 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 9.6e-08
                  -B-TTT-S.-SS....EEEES---EEEHHHHHHHHH CS
    PF13445.1  11 faCpiske.qsteqnpPvvLpCGhvisrealeklak 45 
                  faC i++  + +    P++  CGh +++ +++  + 
  MMETSP0890-20130614|27370_1 239 FACHICRGpFRD----PMMTLCGHYFCQTCIQTRFD 270
                  9*********88....***************97665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.041
                  X-B-TTT-S-SS CS
    PF13445.1  10 ifaCpiskeqst 21 
                  +  Cpi+ +q++
  MMETSP0890-20130614|27370_1 273 STLCPICEKQTS 284
                  457******976 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.8   5.6e-05     0.077      22      75 .]     241     280 ..     221     280 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.6e-05
    PF12678.2  22 CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWl.ktrktCPlcr 75 
                  C iCr ++             d  p ++  CgH F + Ci++   +t++ CP+c+
  MMETSP0890-20130614|27370_1 241 CHICRGPFR------------D--P-MMTLCGHYFCQTCIQTRFdQTSTLCPICE 280
                  777777772............2..1.2234**********988836677*****5 PP

>> PF03854.9  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.1     4e-05     0.055       5      43 ..     241     281 ..     238     284 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4e-05
                  --SS-S--.---EE-SS-EE-HHHHHHT-.SSSSEETTTTE CS
    PF03854.9   5 CksCWfkd.ksLveCsdHYLClrClqllL.svserCpiCkk 43 
                  C  C   + + +++   HY C  C q    + s +CpiC k
  MMETSP0890-20130614|27370_1 241 CHICRGPFrDPMMTLCGHYFCQTCIQTRFdQTSTLCPICEK 281
                  66665333134566668*******99865278*******86 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   4.1   2.9e-05     0.039       9      56 ..     236     279 ..     229     280 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.9e-05
                  XXX-B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT--B------- CS
    PF11789.3   9 rislkCpltlkpfkePvtskkCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                   ++  C + + pf++P+  + C H F ++ I++ +  ++++ CP+  C
  MMETSP0890-20130614|27370_1 236 NLPFACHICRGPFRDPMM-TLCGHYFCQTCIQTRF-DQTSTLCPI--C 279
                  56789***********97.79**************.889999***..8 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.3    0.0039       5.3      11      47 ..     240     272 ..     230     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0039
   PF01363.16  11 kCeiCakkFsltrrrhhCrlCGkvvCskCsskrvekl 47 
                  +C+iC+ +F    r     lCG+ +C++C+++r++++
  MMETSP0890-20130614|27370_1 240 ACHICRGPF----RDPMMTLCGHYFCQTCIQTRFDQT 272
                  599999999....5566789***********999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       706  (0.0516384); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.85
# Mc/sec: 848.59
//
Query:       MMETSP0890-20130614|27368_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-31  109.2  31.4    2.7e-31  108.7  21.8    1.1  1  PF03999.7 Microtubule associated protein (MAP65/ASE1 family)
  ------ inclusion threshold ------
      0.098   12.7   0.1         21    5.2   0.0    2.6  2  PF07615.6 YKOF-related Family


Domain annotation for each model (and alignments):
>> PF03999.7  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7  21.8   3.9e-35   2.7e-31       2     447 ..      50     502 ..      49     517 .. 0.87

  Alignments for each domain:
  == domain 1    score: 108.7 bits;  conditional E-value: 3.9e-35
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-CCGG----..--H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--B----BHHHHHH...HHHHHHHHHHHHHHHHH CS
    PF03999.7   2 qeasladikieessvekdkkeessekkkallkeievlreelkrLsaelGieedisnslLekeplqkksekdileraksirlkvsllkLrdqlesLrkqkaerlaelkelleqleqlcnelG.eptlslkkkdieklslsdleeleelrerlkeleeekekRleeveslkkeikslcelLgvelk......rtdfekdvlsye.............erpndhkvtretldkLdkmleklaaqkkeradkikdlreqiqeLWnrLqisdeeqktf..vreasslsqesikvleeEveRlealkkqnlkkliedlrieieelwdklfySeeqrksFsvvyeelrt...EqlLelhenelkrLkeelssnKeileliekfeslweekeeLEakakDpnRlnnRg..ghL.LkeekerkrltrkLPkveeeLtakveaweeeegkpFLfkGeplleaiaqieaqwerhrqekqrakkrk 447
                  q+++l ++ +e   +   k ++  e +  ++k+iev  +e +++ a lG ++d s  +             i     ++rl   l++L+ +   L + ka r ael+  +++  ql  +l  ++ ++     + + +ls+  +l  l ++l el +  + R+ ++  l+++   l  +L+ +         t+++k+    +              +++  ++  + l+k ++ l+ l+ +k +r ++++ l ++i+ LW+rL+i++ eq +f  +  +ss+  ++  + + Ev +l+a  ++++  l+ + r++i  lwd+l   e  r++ s  ++e +    E+lL +he+ l+ L+++    +++l lie++e+l+     LE+  +Dp Rl  Rg  +    + e    + +++LPk+ e L +k+  we++eg    + Ge+ l+ i   ea+w++h++  +++k++ 
  MMETSP0890-20130614|27368_1  50 QQLQLQKLRDELTQTLRAKLSQEVEVRDVFKKDIEVKISECEQVAAALGAQDDPSWAE-------------IVGSLGELRLSHALMRLEREQVRLLELKAIRAAELEPYTQKIAQLAHRLElDISDYYI--CVGNEELSS-SRLSRLENKLIELWNIEADRISKFAALENQSRALRRELEDDDFintindITEMNKQQ---NsylpeseeiatlfIDADPNDLGANCLAKAQNRLQGLRTEKDNRLQRLQTLGSEISLLWERLEIPEIEQRKFrdMCASSSIRRATFRLGQAEVAKLKAQLRERVVDLVHARRDKIFTLWDELDIPESIRSQ-SAHFIEAQPpfdEELLLQHEELLDTLETKQANLQPLLRLIERREDLIDARLKLEKIQSDPGRLMRRGrgSAAeRRIEMDLEAQVKQLPKLTELLLKKIPDWEAKEGSL-HWRGERYLDTIKRSEAEWKQHKHDSKASKHKS 502
                  67788888899888988899999999***************************99887.............44556678999******998888889999999****9999999999988435555544..577888884.8*************************************9865445553333333333...146699999999997888889************************************************99*9*************************************************998887777.556666666688****************************************************77763555244455567789********************9986.58*********************999888764 PP

>> PF07615.6  YKOF-related Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0052        35      23      65 ..       5      47 ..       3      55 .. 0.86
   2 ?    5.2   0.0    0.0031        21      12      43 ..     213     245 ..     211     254 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0052
                 HHHHCHHTTSEEEE-TTSEEEE--HHHHHHHHHHHHHHHHCCS CS
    PF07615.6 23 alealkksgvrkesdhisTrlrGdvedvfdalealfvkaaqse 65
                 +l  ++ ++v+  ++++   l+ dv++v++al a++++++ s+
  MMETSP0890-20130614|27368_1  5 CLPDSESKQVQGAHQELMETLDVDVKHVVRALAAVWAEVGYSA 47
                 667778899999***********************99987665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0031
                  TSTTHHHHHHHHHHHCH.HTTSEEEE-TTSEEE CS
    PF07615.6  12 gtsdfvdvIlgalealk.ksgvrkesdhisTrl 43 
                   ++df++ I +  e+ k ++   +es++i+T+ 
  MMETSP0890-20130614|27368_1 213 EDDDFINTINDITEMNKqQNSYLPESEEIATLF 245
                  579**************56667899*****974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1034  (0.075629); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.79
# Mc/sec: 1580.38
//
Query:       MMETSP0890-20130614|27381_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.013   14.5   0.0    1.2  1  PF10250.4 GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.2e-07     0.013     230     311 ..      37     118 ..      18     150 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.2e-07
    PF10250.4 230 keidseelrregkcPltpeevklllkalgklkttsvyvAtdeiyggeeeleelkaelpnll..tketlaskeeleklkdselaa 311
                  k  +++   +e+++ +    ++++lk +g ++ + +yv tde   +++++++l++ ++  +  + +    ++  + +++s++ +
  MMETSP0890-20130614|27381_1  37 KITNKKYCPKEMRIATSSDHIAKVLKHIGLPNGSAIYVMTDE--TNFNHFRPLIDIYNYTVatNAHFSHLHRLVAGCQESNMKH 118
                  333334444566666666666*********************..6779999**9999987764333334444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 635.40
//
Query:       MMETSP0890-20130614|27382_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-08   33.1   0.7    4.3e-08   33.1   0.5    2.0  2  PF00505.14 HMG (high mobility group) box
    7.3e-05   23.0   4.0    7.3e-05   23.0   2.8    2.1  1  PF09011.5  Domain of unknown function (DUF1898)


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5         2   1.4e+04      49      57 ..      78      86 ..      69      90 .. 0.45
   2 !   33.1   0.5   6.3e-12   4.3e-08       3      52 ..     106     163 ..     105     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2
                 HHHHHHHHH CS
   PF00505.14 49 pYeekaeke 57
                 +  + ++k+
  MMETSP0890-20130614|27382_1 78 KSSKSSKKK 86
                 333333333 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 6.3e-12
                  -S--HHHHHHHHHHHHHH....HHSTTS-....HHHHHHHHHHTTTTS-HCCHHHHHH CS
   PF00505.14   3 RplsaFflfskeqraklk....aenPdlk....vaeiskklgekWkelseeeKkpYee 52 
                  + +s ++ +s+ +r+++k    +e P+l+    ++e++k+l++ Wk+ls++e+++Y++
  MMETSP0890-20130614|27382_1 106 KRMSGYIYYSNSKRPQVKerllKEQPELSskdfNQEVMKILAADWKKLSPSEQQHYKD 163
                  459***********9987444479****99999***********************97 PP

>> PF09011.5  Domain of unknown function (DUF1898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   2.8   1.1e-08   7.3e-05       2      60 ..      95     166 ..      94     176 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.1e-08
    PF09011.5   2 kkpkrk.......rnAYflFvqtmrpelkregpqvpvgla......evsklcsekWkalseeeKekYeekAk 60 
                  +k+k+k       +++Y ++   +rp+ k++ ++++ +l+      ev+k + ++Wk+ls +e++ Y++ A 
  MMETSP0890-20130614|27382_1  95 PKKKAKgsegpkrMSGYIYYSNSKRPQVKERLLKEQPELSskdfnqEVMKILAADWKKLSPSEQQHYKDIAP 166
                  5555555555566**************99987777655533333349*********************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       802  (0.05866); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 871.11
//
Query:       MMETSP0890-20130614|27388_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-52  177.9  20.1    2.5e-52  177.7  13.9    1.1  1  PF05890.7 Eukaryotic rRNA processing protein EBP2


Domain annotation for each model (and alignments):
>> PF05890.7  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7  13.9   1.8e-56   2.5e-52       3     268 ..       3     262 ..       1     272 [. 0.83

  Alignments for each domain:
  == domain 1    score: 177.7 bits;  conditional E-value: 1.8e-56
    PF05890.7   3 sdielqelfakgelkeelnvevkeqkktinnkealkaklerikl.skklpwverldvvskeetdeqiediedDlkRElaFykqalaavlealkklkklgvpfkRPdDYFAEmvKsDehMqkvkkkLleekaakeaseearkqRelkKfGkqVqveklqerakeKketlekikklkkkrkeeee.deldvaeddeakkkkkkkskkgkkekkkpnakRkakdaKfgfGGkkkgsKsndkeSsndlsgfsskkakggkkkk.......kkkakRpgk 268
                  ++  l+ +  +++ +e+ + ++k  k++  + ++l+++++ +++ s+klpw+e+l +    ++d ++ + +dDl+RE+a+yk +l++v  ++++l+ +g pf RP+D+F Em+KsD hM kvk +L+ +++++ a e++++ +++ Kf+k Vq+ek++++ + Kke+++ki++++k+    ++ + l  +e++ + +++kk        kk p++kR+a d+K+gfGGkk g+K+nd++S+ndls+f+ ++ k+ +k         k +++ pg+
  MMETSP0890-20130614|27388_1   3 EEDALERAALALSREENGSTAKKSVKTKLIDANGLESATS-LAWgSDKLPWIEHLVL----SSDLDTVSGKDDLEREVAIYKLTLSCVADGRSRLELAGEPFLRPKDFFCEMIKSDAHMAKVKDELIFQQKKMDAFEKRKERQQQLKFAKAVQAEKQKQKIQRKKEAVKKIEDFRKQGA--GAsKRLGLDESEPSISSTKK--------KKSPSKKRQALDKKWGFGGKKSGKKRNDAKSINDLSDFRPTRGKSTAKGSrgtfssvKDNNNSPGN 262
                  5556666666666666666668999999*******98765.6666888*******99....3444577789**********************************************************************************************************99..44377776655555433333........46899**********************************887666554446777777444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1630  (0.119222); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.59
# Mc/sec: 1112.88
//
Query:       MMETSP0890-20130614|27396_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.025   14.7   0.0    1.4  1  PF13419.1 Haloacid dehalogenase-like hydrolase
      0.014   14.9   0.2      0.028   14.0   0.1    1.4  1  PF13242.1 HAD-hyrolase-like
      0.021   14.8   0.0       0.03   14.3   0.0    1.3  1  PF12710.2 haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.5e-06     0.025      60     174 ..      59     166 ..      19     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.5e-06
    PF13419.1  60 aeeilealkeanlesrlelfpdvvellrrlkakglklvilSngsaeavellleklgledlfdavftsddvgarKPdpeayekvlerlgvkpeeilfidDsledveaAraaGirtv 174
                  a+++ ++++ a        +p++  llrrl+a +++ +i S  ++ a+e+ + ++g+ +l+ +++++ ++g  K   ++ + ++++     + +l+++D  +d  aA   G   +
  MMETSP0890-20130614|27396_1  59 ADDYSKRIETAL--ACADEIPGATTLLRRLRAVEMPCYINSATPQGALEKAVHARGWAELVTGILGAPETGGDKA--DNLRLIAQMS---GSSVLHVGDGNNDESAAARSGASFI 166
                  444444443332..456899**********999***********************************9998666..7778887666...5999999999988888887776665 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.1e-06     0.028      21      51 ..     142     171 ..     101     182 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.1e-06
                  TTTEEEE---.HHHHHHHHH---EE------ CS
    PF13242.1  21 psevvmiGDslatDieaAnaaGirsilVltG 51 
                   s+v+++GD  + D  aA + G+++i+V+  
  MMETSP0890-20130614|27396_1 142 GSSVLHVGDG-NNDESAAARSGASFIGVRRD 171
                  578*******.*****************984 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.6e-06      0.03      70     190 ..      59     158 ..       9     159 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.6e-06
                  -HHHHHHHHHH.......H--B......HHHHHHH......HTTEEEE-SS-HHHHHHHHH---EE--B--GGG-.----HH----HHHHHHH.HHSHHHHHHHH---TT----S--EE---GGGHHHH CS
    PF12710.2  70 aarylealakeieeaklfegfi......pdaaellkelheaglrvvvlsgdprliakpvakelgidevnvlatel.edegggkvdgritgkld.gKaraverlvvlaykqvggrivvaiGDsanDlpal 190
                  a++y ++++           ++      p+a +ll++l++   ++++ s++p+  ++  + + g+ e  +++  l             tg+ +  ++r+++++        +g  v+ +GD+ nD +a+
  MMETSP0890-20130614|27396_1  59 ADDYSKRIE----------TALacadeiPGATTLLRRLRAVEMPCYINSATPQGALEKAVHARGWAE--LVTGILgA---------PETGGDKaDNLRLIAQM--------SGSSVLHVGDGNNDESAA 158
                  333333322..........1112334445666*****9777************99999987777776..55666623.........334443466999*****........25669*********8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.79
# Mc/sec: 1010.11
//
Query:       MMETSP0890-20130614|27412_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-82  276.2   3.2      6e-82  275.8   2.2    1.0  1  PF00450.17 Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> PF00450.17  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.8   2.2   4.4e-86     6e-82       8     309 ..      20     300 ..      15     309 .. 0.88

  Alignments for each domain:
  == domain 1    score: 275.8 bits;  conditional E-value: 4.4e-86
                  ..-EEB--EEET.TTTEEE-EEEE--SS-TTTS-EEEE--------TT----S-----B--..--S--B--TT-GGGCSEEEEE--STT----B------...STTT---HHHHHHHHHHHH-CHHCH--EEEE--TT---HHHHHHHHHHC-SS-....SS-EEEEEE------HHHHGGGHHH-------S-HHHHHHHHHCH....HHH---HHHHHHH--HHHHHH..............HHHHHH....---TT-TTS--............-----SSTTHHHHHHHHCSCCHHHH--...--SSS--S--HHH CS
   PF00450.17   8 nfkqysGYldveekedkslFYwfvesennpetdplvlWLnGGPGCSSlgGlleElGpfrvnkdstkkleenpysWnkvanvlfldqPvgvGFSysntssdyktddeetaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeileenkkgekpninlkGvligNglideatqvnsyvefayehgliseeeyeklkkackknakalekestkcaklveeaskev..............vlkeng....ginvyniyedcctlsslkksstdsqggldcysesavekylnreeVrkalhvnkaevkeweecndev 309
                  ++k ++GY+++e  +  +lFYwf+es+++p+ dplvlW+ GGPGCSS+ +l++E+Gp+ + +d   +   n ysWn++a+v+++dqP+g+GFS +    +    ++ +a+d++ef++ f++k+p+y++ d+yi+GESYaGhyvPa+a+++ +++        +lkG+ igNgl+d+ tq+++y ++a eh+l+s++ ++ ++k      + +e+ +++c+  ++++s+                          gin+y+++++c              ++  cy+ +a+++ylnr++V++al+v+    k+w+ec++ v
  MMETSP0890-20130614|27412_1  20 TVKNFAGYIEIE--KRGELFYWFFESRDDPSHDPLVLWFSGGPGCSSMLALFSENGPYVIGDD--GEAALNAYSWNNNASVMWIDQPLGTGFSRGVPVHS----EKGVAQDMLEFMQLFYTKYPKYAQLDLYIFGESYAGHYVPAIAAKLQQAK------FTQLKGIGIGNGLTDPFTQYKYYAPYAEEHNLVSSTVLSFMQKMD----TLCEPLINACNHDNNNVSTWSeclnayvlcnlaeiS----PvqstGINTYDVRKQC-------------GDNPLCYNFTAIDTYLNRADVQQALNVS----KKWNECSHLV 300
                  5699********..99*********************************************55..599***************************99765....**********************************************9998......679********************************9999888666....567777777777766666543555777777665542....044459**********.............57889********************864....79****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.76
# Mc/sec: 977.46
//
Query:       MMETSP0890-20130614|27414_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 1088.23
//
Query:       MMETSP0890-20130614|27446_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.90
# Mc/sec: 460.63
//
Query:       MMETSP0890-20130614|27437_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-26   92.2   0.3    5.8e-26   91.2   0.2    1.5  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    5.1e-10   39.2   0.2    1.1e-09   38.1   0.2    1.5  1  PF13499.1  EF-hand domain pair
    7.1e-08   31.8   0.1     0.0013   18.1   0.0    3.2  3  PF13833.1  EF-hand domain pair
    3.5e-07   28.9   0.6     0.0062   15.6   0.1    2.6  2  PF00036.27 EF hand
    8.2e-07   29.3   0.0    1.4e-06   28.5   0.0    1.4  1  PF03447.11 Homoserine dehydrogenase, NAD binding domain
    2.4e-06   26.8   0.9      0.027   14.2   0.0    2.5  2  PF13405.1  EF-hand domain
    3.2e-06   26.8   0.0    6.3e-06   25.8   0.0    1.6  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain
    2.1e-05   23.5   0.6      0.021   14.0   0.2    2.5  2  PF13202.1  EF hand
    0.00018   21.7   0.0    0.00038   20.7   0.0    1.6  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
     0.0076   15.3   0.0      0.044   12.8   0.0    2.1  2  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.01   15.7   0.0       0.02   14.7   0.0    1.5  1  PF02254.13 TrkA-N domain
      0.014   15.4   0.2       0.04   14.0   0.1    1.7  1  PF13241.1  Putative NAD(P)-binding
       0.02   14.7   0.0      0.038   13.8   0.0    1.5  1  PF00044.19 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
      0.027   14.4   0.1      0.049   13.6   0.1    1.4  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.049   12.4   0.1      0.072   11.9   0.0    1.2  1  PF03435.13 Saccharopine dehydrogenase


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.2   6.4e-29   5.8e-26       2     118 ..     121     237 ..     120     239 .. 0.95

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 6.4e-29
                  EEEEE----HHHHHHHHHHHCHCSEEEEEEEGSSHCCHHHHHHHCTHHCCSSHH.HHHHSTT-SEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEE CS
   PF01408.17   2 rvgivGaGkigsrhlrplnesqrreelvalvdpdperaeavaesfgveaysdle.elledpkidavivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsv 118
                   vg+vG+G+ig+ hl+ l ++ +++++v + +pd ++ae++a+ f+v+ +++ e e++e+p+++av++++p+  ha  ++++++++khv++EKP+at+++e    ++++e+k+ ++++
  MMETSP0890-20130614|27437_1 121 GVGLVGCGRIGKVHLETLSRA-SGARVVIVSNPDVKKAEDAAKMFNVAEWTSNEdEVIEHPDVEAVWICSPSAYHASQIIKCAKNNKHVFCEKPVATNLNETISAIRAMERKNLKLMI 237
                  589***************999.9*************************8888554********************************************************9999887 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   1.2e-12   1.1e-09       5      65 ..     487     543 ..     474     544 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.2e-12
    PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  +F+ lD+ +dgy++   ++++l++lg    ++ +  +l+++++ +D ++dG+ls ++f+ +
  MMETSP0890-20130614|27437_1 487 VFQILDVERDGYISTFNIKEALNRLG----EYPSNAELTRLVRIADVDNDGRLSAQDFEDL 543
                  6*************************....88899999999*****************986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4   1.3e+03       5      33 ..     133     166 ..     131     167 .. 0.71
   2 !    9.5   0.0   0.00072      0.65      15      43 ..     472     500 ..     468     502 .. 0.90
   3 !   18.1   0.0   1.4e-06    0.0013      11      47 ..     505     540 ..     503     544 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.4
    PF13833.1   5 ItreeLkral.allglkg....lseeevdilfre 33 
                  +  e+L+ra+ a + + +     ++e++  +f++
  MMETSP0890-20130614|27437_1 133 VHLETLSRASgARVVIVSnpdvKKAEDAAKMFNV 166
                  55799*****999977778774444448777775 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00072
    PF13833.1  15 allglkglseeevdilfrefDtdgdGkis 43 
                  allg++ ++ +++ ++f  +D ++dG+is
  MMETSP0890-20130614|27437_1 472 ALLGKELMERSDIVAVFQILDVERDGYIS 500
                  66899999********************8 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.4e-06
    PF13833.1  11 kralallglkglseeevdilfrefDtdgdGkisfeEF 47 
                  k+al+ lg   +s+ e++ l+r +D d+dG++s  +F
  MMETSP0890-20130614|27437_1 505 KEALNRLGEY-PSNAELTRLVRIADVDNDGRLSAQDF 540
                  6778556666.**********************9888 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00016      0.15       3      28 ..     485     510 ..     483     511 .. 0.83
   2 !   15.6   0.1   6.8e-06    0.0062       1      26 [.     519     544 ..     519     547 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
                  HHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   3 keaFkefDkDgdGkIsfeEfkealkk 28 
                    +F+++D+ +dG+Is    keal++
  MMETSP0890-20130614|27437_1 485 VAVFQILDVERDGYISTFNIKEALNR 510
                  579*************8888887765 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6.8e-06
                  HHHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkeal 26 
                  el ++ +++D+D+dG++s ++f +++
  MMETSP0890-20130614|27437_1 519 ELTRLVRIADVDNDGRLSAQDFEDLF 544
                  5677889***************9986 PP

>> PF03447.11  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.5e-09   1.4e-06       1      86 [.     126     208 ..     126     238 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.5e-09
                  -------HHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--TTT---HHHHHH---EE CS
   PF03447.11   1 GlGaiGsallellkrqqeeiplelvavadrdsllskarkallgdeavtldlddlvadlrvdvvVEcasseavaelvlkaLeagkhv 86 
                  G+G+iG+  le l+r     ++++v+v + d ++ ++++++++ +  t++ d+++++++v+ v  c +s++ a+++ k+ +++khv
  MMETSP0890-20130614|27437_1 126 GCGRIGKVHLETLSRAS---GARVVIVSNPDVKKAEDAAKMFNVAEWTSNEDEVIEHPDVEAVWICSPSAYHASQIIKCAKNNKHV 208
                  9************9987...89*********777888999*******************999999********************9 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-05     0.027       2      31 .]     484     512 ..     483     513 .. 0.89
   2 !   10.7   0.1    0.0004      0.36       2      26 ..     520     544 ..     519     549 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-05
                  HH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrkslg 31 
                  + ++F+++D  +dG+i+   ++ aL+  lg
  MMETSP0890-20130614|27437_1 484 IVAVFQILDVERDGYISTFNIKEALN-RLG 512
                  6789******************9999.555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0004
                  HH---GCC-------B---HHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                  l ++ ++ D d+dG+++a+++ d++
  MMETSP0890-20130614|27437_1 520 LTRLVRIADVDNDGRLSAQDFEDLF 544
                  66778899*************9865 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.9e-09   6.3e-06       4      86 ..     254     335 ..     251     370 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.9e-09
                  HHTTGG--SSEEEEEEEEEEECCSCHHCTTSSCCHHCHHCCTTCHHHHHHHHHHHT-EEEEEEEEE-SCEECTCCCECCCE......E CS
   PF02894.12   4 iengklGevvsvsvwflddragrpskkrwkrrakkggGvlgdlgiHdiDllqwLfGeppsvvaalgrqrqvaeateledaav.....s 86 
                  i +g++Ge+  v+      +  +p+++ ++  + ++gG++ d++iHd+D+ ++ + ++p++  a g ++  ++  +l++ +      +
  MMETSP0890-20130614|27437_1 254 ILRGEIGEPILVK-----LCSRDPAPPPARYVK-GSGGIFKDQAIHDLDMSRFFMASEPTEILASGMTCVSDDILHLDGPEKydtatI 335
                  6778888888886.....455555566666554.89****************************998888888877777765555442 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0028       2.6       1      17 [.     484     500 ..     484     506 .. 0.93
   2 !   14.0   0.2   2.3e-05     0.021       6      23 ..     525     542 ..     520     544 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0028
                  HHHHHHHH--S----B- CS
    PF13202.1   1 lkdtFrafDlNgDGkIs 17 
                  ++++F+ +D+ +DG Is
  MMETSP0890-20130614|27437_1 484 IVAVFQILDVERDGYIS 500
                  6799************9 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.3e-05
                  HHH--S----B-HHHHHH CS
    PF13202.1   6 rafDlNgDGkIsreELkr 23 
                  r +D+++DG++s+++++ 
  MMETSP0890-20130614|27437_1 525 RIADVDNDGRLSAQDFED 542
                  789************986 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.1e-07   0.00038       2      64 ..     122     182 ..     121     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.1e-07
   PF03807.12   2 igiiGaGnigealakglaaagaqkheviiaasrspekaeelaeelgvkvtavsneeaaeeadv 64 
                  +g++G+G+ig+  ++ l++a     +v+i+++++ +kae++a+ ++v   +++  e++e+ dv
  MMETSP0890-20130614|27437_1 122 VGLVGCGRIGKVHLETLSRAS--GARVVIVSNPDVKKAEDAAKMFNVAEWTSNEDEVIEHPDV 182
                  799**************9986..69999999***************98888899999998776 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.8e-05     0.044      39      95 ..     122     176 ..     120     192 .. 0.74
   2 ?   -1.4   0.0       1.1     1e+03      86     111 ..     476     501 ..     467     507 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-05
                  EE-B-------HHHHHHH.H---EEEE--SS--...HHHH---EE--CCCCCCC-SEE CS
   PF02826.14  39 vGiiGlGrIGqavakrlk.afgmkvlaydrskkkeeeeeelgaevvsleellaesDvv 95 
                  vG++G+GrIG+   ++l+ a g++v++++    k++   e  a++ ++ e  ++ D v
  MMETSP0890-20130614|27437_1 122 VGLVGCGRIGKVHLETLSrASGARVVIVSNPDVKKA---EDAAKMFNVAEWTSNEDEV 176
                  8**********9999998899**9998877655333...2234555666666655555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.1
                  CCCCCC-SEEEE----STTTTT-B-H CS
   PF02826.14  86 eellaesDvvslhlpltpetrhlina 111
                  +el+++sD+v +   l  e  + i+ 
  MMETSP0890-20130614|27437_1 476 KELMERSDIVAVFQILDVERDGYIST 501
                  799*******9988887777777765 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.2e-05      0.02       3      61 ..     124     183 ..     122     227 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.2e-05
                  EE---HHHHHHHCCCHH.--..EEEEES-HHHHHHHHH---EEEE--TTSHHHHHHTT-- CS
   PF02254.13   3 iiGlGrvGrslaeeLre.gekdvvvidkdeerveelreeglevvvgdatdeevLeeagie 61 
                  ++G+Gr+G+  +e+L++  +++vv++ + + + +e +++ ++v +   +++ev e+ ++e
  MMETSP0890-20130614|27437_1 124 LVGCGRIGKVHLETLSRaSGARVVIVSNPDVKKAEDAAKMFNVAEWTSNEDEVIEHPDVE 183
                  69***************7667677777766444444556688988888888888876444 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.4e-05      0.04      11      85 ..     123     206 ..     119     220 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.4e-05
                  EEE-------HHHHHHTT.---EEEEE-SS-.-TT-...T...........-....TT--EEEEE--S-HHHHHHHHHHHHH-- CS
    PF13241.1  11 lvvGgGevAarkvrklle.agakvtvvspei.kele...elvklaeeefeed....legadlviaatddeelneriaeaakerr 85 
                   +vG G++++  +++l + +ga+v++vs+   k++e   + +++ae + +ed      +++ v+++ + +    +i + ak+++
  MMETSP0890-20130614|27437_1 123 GLVGCGRIGKVHLETLSRaSGARVVIVSNPDvKKAEdaaKMFNVAEWTSNEDevieHPDVEAVWICSPSAYHASQIIKCAKNNK 206
                  589**************9456******966334444344333333222222233223468899999999999999999887543 PP

>> PF00044.19  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.1e-05     0.038       3      53 ..     122     176 ..     120     214 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.1e-05
                  E--B-------HHHHHHHCHTTEEE-EE....E-TTS-HHHHHHHHH--S----- CS
   PF00044.19   3 vgInGfGriGrlvlrallkqedlevvai....ndlagdletlayllkydsvhgrf 53 
                  vg+ G GriG++ l+ l + +  +vv +     + a d++++  + +++s ++++
  MMETSP0890-20130614|27437_1 122 VGLVGCGRIGKVHLETLSRASGARVVIVsnpdVKKAEDAAKMFNVAEWTSNEDEV 176
                  899*************************654433333555555555566666555 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.4e-05     0.049      15      90 ..     122     199 ..     119     235 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.4e-05
                  EEEE----HHHHHGGG--TT.T-E.EEE----HHHHHHHHHHH...T-EE---S.-HHHHHHT-SEEEE-S--SS-..SB CS
   PF01488.15  15 vlviGAGemarlvakhLlek.gvkkiviaNRtaekakeLaeelggeevealple.eleellaeadvvisatsapep..ii 90 
                  v ++G G +++  +++L++  g++ +++ N + +ka++ a+ ++    e ++ e e+ e+    +v i+++sa +   ii
  MMETSP0890-20130614|27437_1 122 VGLVGCGRIGKVHLETLSRAsGARVVIVSNPDVKKAEDAAKMFNVA--EWTSNEdEVIEHPDVEAVWICSPSAYHAsqII 199
                  569***************999**********************322..33332202223444445555666555443333 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.9e-05     0.072       1      97 [.     122     215 ..     122     235 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.9e-05
   PF03435.13   1 vlvlGaGsvGqavaellarhgdvdeitvadrtlekaqalaakalglrveaialdvsnyeaLeallkegdlvvnlappilsltvlkaCietgvhyvd....t 97 
                  v ++G+G++G++ +e l+r +   ++++++  + k ++ aa    + ++ ++ + +++e +e    + ++v  ++p  ++++ +  C+++ +h+ +    +
  MMETSP0890-20130614|27437_1 122 VGLVGCGRIGKVHLETLSRASGA-RVVIVSNPDVKKAEDAA----KMFNVAEWTSNEDEVIEH--PDVEAVWICSPSAYHASQIIKCAKNNKHVFCekpvA 215
                  6789*****************99.99998877777444433....346666776666663333..566778888888888888888888888887766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.75
# Mc/sec: 1763.72
//
Query:       MMETSP0890-20130614|27441_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-91  305.7   0.5    3.4e-91  305.1   0.4    1.2  1  PF02733.12 Dak1 domain
      3e-35  121.3  10.6      3e-35  121.3   7.3    2.5  3  PF02734.12 DAK2 domain


Domain annotation for each model (and alignments):
>> PF02733.12  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.1   0.4   4.9e-95   3.4e-91      17     309 ..      45     341 ..      38     350 .. 0.90

  Alignments for each domain:
  == domain 1    score: 305.1 bits;  conditional E-value: 4.9e-95
                  TTEEEETT-.....------EE-------TTS-----------------TTS---HHHHHHHHHHH.------EEEEES----HHHHHHHHHHHHH-.----EEEEE--B-SSSSSTT-.------THHHHHHHH---TTT----HHHHHH---TTTT---EE--B------TT----SS---TTEEEE----------EEEE---.HHHHHHHHHHHHHH-....--EEEEE-------EEEEEEE------HHHH---HHHHHHHH.HH---EEEEEE----S--TT----EEEEEEE-HHH CS
   PF02733.12  17 ekvvlrads.....kadkvalisGGGsGHePlhagfvgeGlldaavaGeiFaSPstkqilsaikav.esekGvLlivkNYtGDilhFglaaErakae.GvkvelvvvaDDvsvgkkkeglvgRRglagtvlvhKivgaaAekgleLeevaevakkvvdnlvtigasldhctvPgakkeseelkedemelGlGiHnEpGikksslipsidelvaelletllde....edkdrayvklesgdevvllvNnlGgvsllelyaiaekvveqlaeeagikiervltGafvtsldgaGfsitllkadkat 309
                   +v++r+d+     +a+kva+isGGGsGHeP+hagf+g+Gll+aav+G+iFaSP++k +l ai  v +++ G+LlivkNYtGD l+Fg+aaE a++  G+ ve+v v DD ++ ++ +     Rglagt++vhKi+ga Ae+g++L+eva+ a+ + ++l+t g+ l  c +Pg + + + l++de+elGlGiHnEpG ++ +++ps++ l+++l++  l++    +++  +  + e+   v+l+ NnlGg+s le+++      +++ e+++i+++r l Ga++tsl+  G sitl ++d+  
  MMETSP0890-20130614|27441_1  45 VRVLVRRDYdvsvkRAGKVAIISGGGSGHEPAHAGFLGRGLLTAAVCGDIFASPTAKAVLCAIATVsNASVGCLLIVKNYTGDRLNFGIAAETARSRlGIPVETVYVSDDAALPNATQP----RGLAGTIIVHKIAGAVAERGADLAEVAAAARIAANRLATTGICLRECLLPGSNATISRLADDEVELGLGIHNEPGSQRLQPMPSVSILAQRLVDACLNKllppKNDTDS--EEETRMTVALVSNNLGGTSGLEMTIFGASCIKAC-EKRSIHVVRCLDGALITSLEAHGASITLFRLDDDA 341
                  5677777766677689***********************************************99945678***********************9855****************99998....*******************************************************999**************************9877666665555541100554433..566666788888**********************.9******************************9875 PP

>> PF02734.12  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.71   4.8e+03     116     133 ..     181     199 ..     170     203 .. 0.55
   2 ?    2.8   0.0     0.011        75      16      84 ..     257     321 ..     252     333 .. 0.71
   3 !  121.3   7.3   4.3e-39     3e-35       1     174 [.     429     603 ..     429     604 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.71
   PF02734.12 116 d.gedleealeaaakaaek 133
                  + g+dl+e+++aa  aa++
  MMETSP0890-20130614|27441_1 181 ErGADLAEVAAAARIAANR 199
                  2356666666666655554 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.011
   PF02734.12  16 eavlkaleeleeeadlaevlkaiakallskagGtsGvlysqflraaakalkekeeldaedlakaleaal 84 
                  +a+l++l   ++++d +e  + +   + ++ gGtsG  + +f ++  ka+++++     +++++l  al
  MMETSP0890-20130614|27441_1 257 DACLNKLLPPKNDTDSEEETRMTVALVSNNLGGTSGLEMTIFGASCIKACEKRSI----HVVRCLDGAL 321
                  5666666655678888888999999999********9999999999999966555....4444444444 PP

  == domain 3    score: 121.3 bits;  conditional E-value: 4.3e-39
   PF02734.12   1 pvGDGDtGtnmargaeavlkaleel..eeeadlaevlkaiakallskagGtsGvlysqflraaakalkekee...ldaed..lakaleaaleaikavGkakpgdkTmlDvlrpavealeaakdgedleealeaaakaaekgaeaTkellaklgrAsylgersl.gvvDpGAvglalileala 174
                  +vGDGD+Gt++a+ga+++l+ ++++    +a + ++l+++a+++++++gGtsG+ly   lraa ++l+ +e+    da +  + +a+ +a++a+   G+a +g kTm+D+++pa++ l++ +       +l+aaa aa+kga++T ++ a+ gr++ ++ +++ gv DpGA+++al+lea+a
  MMETSP0890-20130614|27441_1 429 AVGDGDCGTTLASGARSILALMQQEpkYFDAGAPTALAKMAHIVANTMGGTSGALYTLGLRAAEASLRAAENsdnDDA-HyhFRHAFVTASRAVSDCGGAAIGSKTMCDAIIPAADVLRRPDG------TLKAAALAARKGADSTVSIIATHGRSANVAADKQqGVADPGAIACALMLEAAA 603
                  59**********************9877788999*******************************9966444232233.2359*************************************544......8*************************999998888***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:00.93
# Mc/sec: 1561.50
//
Query:       MMETSP0890-20130614|27491_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-21   74.2   0.4    5.9e-21   74.2   0.3    2.6  3  PF02996.12 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.012   1.7e+02      83     111 ..       5      33 ..       4      36 .. 0.89
   2 ?   -2.6   0.0      0.26   3.5e+03      89      98 ..      56      65 ..      53      81 .. 0.47
   3 !   74.2   0.3   4.3e-25   5.9e-21       6     118 ..      87     202 ..      82     204 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.012
                  HHHHHHHHHHHHHH---HHHHHHH---HH CS
   PF02996.12  83 kkkleelekqlekleeeleklkdqittle 111
                  kk++eel+++l++  +  e++++q + l 
  MMETSP0890-20130614|27491_1   5 KKEVEELDSALKEGGNRTEDASEQFKDLK 33 
                  7999*****************99999876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.26
                 HHHHHHHH-- CS
   PF02996.12 89 lekqleklee 98
                 +ek le+ e+
  MMETSP0890-20130614|27491_1 56 VEKLLEETEN 65
                 2222222222 PP

  == domain 3    score: 74.2 bits;  conditional E-value: 4.3e-25
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHTT...--SS--B-EE-----EE----S-TTEEEEE-----EEEEEHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHH CS
   PF02996.12   6 eslqaeleqlkeaieelektletlktlkk...edegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleeeleklkdqittleanlaqly 118
                  +++ ++ +++  +i+e+e+tl+ ++ l++   ++e+ ++++ l+++ly++a++  +  v ++lGa ++ve++++eA+ +l   l++++  ++ + ++++ ++dqi t+e+n+a++ 
  MMETSP0890-20130614|27491_1  87 SHKVRTKKAMAVKIPEIERTLQLVDHLIEsyeKNEELTTHYSLSEMLYARAKIHTNGVVALWLGAQVMVEYPYDEAKNILTTSLKNAKLRRDICDQDIDHIRDQIITVEVNMARVF 202
                  5666788889999****************************************99999*******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       775  (0.0566852); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.59
# Mc/sec: 926.05
//
Query:       MMETSP0890-20130614|27500_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.3   1.7    9.2e-09   34.9   1.2    2.1  1  PF00855.12 PWWP domain


Domain annotation for each model (and alignments):
>> PF00855.12  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   1.2   6.7e-13   9.2e-09       3      63 ..     136     208 ..     134     218 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 6.7e-13
                  ----EEEE-B---BSEEEEEE-GCCTSSSS..............-SS-EEEEE----EEEEE-GCCEEEHHHH CS
   PF00855.12   3 kigdlVlaKvkgfpwWPArvvsqketptsvr............rksnkvkVlFfgdhktawvskkklkpldsd 63 
                  k g lV+aK + +pwWPA+++   +   +              ++  k +V+Ffgd ++ +++ +++ p d++
  MMETSP0890-20130614|27500_1 136 KLGKLVWAKSGQYPWWPAELCLPSAEIIHTAlpvpkrssssvdAFGPKQFVFFFGDAQFDILDTDRIAPFDAK 208
                  6799***************996554432222457777888888888899********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:01.03
# Mc/sec: 574.66
//
Query:       MMETSP0890-20130614|27508_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 348.56
//
Query:       MMETSP0890-20130614|27561_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.87    9.5   3.4        1.3    8.9   2.3    1.4  1  PF04863.8 Alliinase EGF-like domain


Domain annotation for each model (and alignments):
>> PF04863.8  Alliinase EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.3   9.2e-05       1.3      16      40 ..      13      41 ..       6      49 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.2e-05
    PF04863.8 16 aikCsgHGraylDGii...sdGs.PiCEc 40
                 +  Csg G  +lDGi      G    C c
  MMETSP0890-20130614|27561_1 13 SFFCSGTGGGFLDGIGggfLVGIgGGCRC 41
                 567***********974333444344555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.70
# Mc/sec: 174.59
//
Query:       MMETSP0890-20130614|27568_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   12.7   0.0      0.063   12.5   0.0    1.1  1  PF11363.3 Protein of unknown function (DUF3164)


Domain annotation for each model (and alignments):
>> PF11363.3  Protein of unknown function (DUF3164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.6e-06     0.063      30      82 ..      37      87 ..      32     106 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.6e-06
    PF11363.3 30 vekakalskqlaefkakafediaafvelsaeeYgvkvggkkGnvtlvsfDgky 82
                 ++ a++l k++  +k+++f+di af +  a+ Yg +++  + nv+  s+D k 
  MMETSP0890-20130614|27568_1 37 LALAEHLAKHMLILKDAVFDDILAFFDA-AQIYGKQIST-QVNVSAESVDPKN 87
                 567999********************95.899**99965.6799999999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 364.25
//
Query:       MMETSP0890-20130614|27575_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.3   0.0     0.0016   18.0   0.0    1.2  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-07    0.0016      73     118 ..       5      50 ..       1      61 [. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.2e-07
                  ---EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----E CS
   PF00156.22  73 reaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagake 118
                   e+   +s+++ +l+ + +l+ D +latGg+  +aie L  aga++
  MMETSP0890-20130614|27575_1   5 AEPILMYSKLPNNLEHRYILLADPMLATGGSACKAIEVLVHAGARQ 50 
                  5677788999999999*********************999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 449.84
//
Query:       MMETSP0890-20130614|27576_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.2e-113  377.1   0.5   6.7e-113  376.7   0.3    1.1  1  PF00456.16 Transketolase, thiamine diphosphate binding domain
    1.3e-37  128.9   0.0    2.4e-37  128.0   0.0    1.5  1  PF02779.19 Transketolase, pyrimidine binding domain
    1.8e-11   43.3   0.0    5.4e-08   31.9   0.0    2.3  2  PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
    9.5e-10   38.3   0.0    2.9e-09   36.8   0.0    1.9  1  PF02780.15 Transketolase, C-terminal domain
     0.0041   15.7   0.3      0.015   13.8   0.2    1.8  2  PF00676.15 Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> PF00456.16  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.7   0.3  2.4e-116  6.7e-113       5     330 ..      22     351 ..      18     354 .. 0.96

  Alignments for each domain:
  == domain 1    score: 376.7 bits;  conditional E-value: 2.4e-116
                  HHHHHHHHHHHHHHHHT---HHHHHTTHHHHHHHHHTT-BB-TTBTT-TTS-EEEE-----HHHHHHHHHH---.--HHHHTTTTSTT-S------T....TTTT-.SS---------TTT...HHHHHHHHHHH----SS--S--EEEEE----TT---HHHHHHHHHHTT-TTEEEEEEE-S----S-GCCTT-CHHHHHHHH---EEEEEE----HHHHHHHHHHHCCS.TTS-EEEEEE-------TTTTT-GGG------HHHHHHHHHH..HHT.TCHHHHHHHHHHHHCTT...HHHHHHHHHHHHHHHHSCCHHHHHHHHH-- CS
   PF00456.16   5 avnaiRvlavdavekaksGHPgaplglaeiaevlfkktlkhnpkdpkwidrDRFvLSnGHaslllYallhltGydlsleelksfrqlgsktpGHPel....keaagvevttGpLGqGianavglalaekalaatynkpgfdivdhyvyvllgDgclmEGvssEaislagvlkLgkLialyDdNkisidgeteisftedvakrfeaygWhvievedgedveeiakAieeAkae.kdkPtlikvktviGfgspnkegkedvHGapLgedevaalkkklGfdeksfeipqevydaikekeaegakaeeeWeellaaykkaapeeaaelerrlng 330
                  a+   R la+d++++aksGH g plg+ae+ +vlf + ++ np++p+wi+rDRFvLS+GH+s++lY+ lh++Gydl+++e+k+frq +s tpGHPe+    ++++gve ttGpLG Gi+n +g+a a k+ aa +n ++++i+d+++++++gDgcl+EGvs Ea+ +a++ kL++Li+lyD N++++d  +e + +edv +r++aygW+v   +dg+d+++i++A+e+Aka+ + kP +i++kt iG+g+ +++g++++HG++  +  v+ ++k+lG+ +++  + ++ y+ ++e++++ +++  eW++++ a+kka +++a+ l++ +++
  MMETSP0890-20130614|27576_1  22 AATEARGLAMDSIAAAKSGHLGLPLGAAEMGAVLFGSSMTFNPEEPQWINRDRFVLSAGHGSMFLYSWLHIAGYDLPMDEVKNFRQHHSMTPGHPEFpnseHNTPGVEATTGPLGAGISNCAGIAAASKMSAALFNTDEHTIFDNHIFCIVGDGCLQEGVSAEASCFAAHEKLDNLIVLYDANDVTLDKMAEFTQSEDVGMRYQAYGWDVTILTDGHDIKAISDALEDAKANdNGKPKMIICKTEIGRGIDEVAGTNAAHGEAGVAY-VDDARKNLGLPDDKWFVSDDTYAFFEERKNQLKEKYTEWQNTFDAWKKANADKAKILQDGIDK 351
                  67889*******************************************************************************************844435689*****************************************************************************************************************************97257***************************96665.******************************************************999987766 PP

>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0   8.7e-41   2.4e-37       2     175 ..     371     544 ..     370     546 .. 0.95

  Alignments for each domain:
  == domain 1    score: 128.0 bits;  conditional E-value: 8.7e-41
                  EEEHHHHHHHHHHHHHCC-TTEEEEESS-HHHHTTHHHHHHEGG-......-EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG..HHGGHHHHHHHHHHTT---E.EEEEEE--------TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEE CS
   PF02779.19   2 kiawrkaeaealaellkedpevvllgaDvargtfsvrkgllhdqg......egrvidsgisEqamlgfavGaalagpllviweaqfgdFangAqiyadqairsgeakgklpvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkqll 175
                  +ia+r a +e+++ +++  p  + ++aD+ ++t   +kg  ++         gr++ +gi+E+am  + +G+++ g l+++ +a+f++Fa+    y+++a+r  +a+ +lpv+ ++t+++igvgedGp+hq++e+++ lr+ p+l v+rP+dp+et+g++ ++i ++  +P++l+l++q++
  MMETSP0890-20130614|27576_1 371 NIATRIAGSEVINYIADSVPLYISGSADLHGSTKNYIKGGGDFGVdfgksyTGRNVYYGIREHAMGCILNGFSYYG-LFRPSGATFLVFAD----YMRAAVR-VAALAELPVQyIWTHDSIGVGEDGPTHQPVETVSGLRAFPNLDVIRPADPEETAGAYVASIDKK-TGPTALILTRQNV 544
                  689999************************88888888888877778888888***********************.8*************....*******.**************************************************************65.69*********97 PP

>> PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     2e-11   5.4e-08      14     176 ..      15     209 ..       6     219 .. 0.78
   2 !   10.2   0.0   8.2e-05      0.22     218     267 ..     210     262 ..     205     265 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2e-11
    PF13292.1  14 seeelkelaeeirefliekvs.ktggHlgsnLgvvEltvalh...yvfdspk......DklvwDvgHQa...YvhKiLtgRk...ekfetlrqkggls.gfpkreEseyDa....fevgHsstsisaalGlakardlkge..........kekvvaviGDgaltgGmafealnnagelkk.klivilNdNemsis 176
                  + e+l + a+e r   +++++ +++gHlg  Lg+ E+   l+     f+ ++      D++v   gH +   Y +  ++g     +++++ rq++ ++ g+p+   se+ +     ++g  ++ is   G+a+a++++            ++++ +++GDg l  G++ ea   a+++k  +liv++  N+ + +
  MMETSP0890-20130614|27576_1  15 TMESLATAATEARGLAMDSIAaAKSGHLGLPLGAAEMGAVLFgssMTFNPEEpqwinrDRFVLSAGHGSmflYSWLHIAGYDlpmDEVKNFRQHHSMTpGHPEFPNSEHNTpgveATTGPLGAGISNCAGIAAASKMSAAlfntdehtifDNHIFCIVGDGCLQEGVSAEASCFAAHEKLdNLIVLYDANDVTLD 209
                  5678999999****99999861689************999974446899642223333*********9776688999999864447788889998886589********982222345777899**********99998778888888888********************999988876155555555665544 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.2e-05
    PF13292.1 218 kleeslkel.vpnlfeelglkyigpidGhdleelikvleevkkl..kgpvllh 267
                  k+ e +++  v + ++++g + +  +dGhd++++ ++le++k+    +p+++ 
  MMETSP0890-20130614|27576_1 210 KMAEFTQSEdVGMRYQAYGWDVTILTDGHDIKAISDALEDAKANdnGKPKMII 262
                  555555555456899**************************986214477765 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.1e-12   2.9e-09       7     122 ..     570     673 ..     563     675 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.1e-12
                  ETTECEEEEEESTHHHHHHHHHHHHHTTT-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSEC.EEEEHCHHHHHHHH.HSGGG-SSEEEEEEEESSSHHSSHHHHHHHS--HHH CS
   PF02780.15   7 regkdvtivayGsmveealeAaeeLakegisaevidlrtvkPlDeetidesvkktgrlvvveeavk.igGigaevaaalae.egftkldapvrrvggpdvpiphapalelaylgltae 122
                  + + + +i+a+Gs+v++a++Aa+eL k          r+v+++++e +d  ++++++  +++  +  +++++a+++a +++  g++ l ++v+++g  ++p +     +  ++g+t+e
  MMETSP0890-20130614|27576_1 570 ETDLECIIIATGSEVQHAVKAAKELGKG--------YRVVSMPCMERFDR-QDAAYKEEILPSSCSkRVSMEAGITAPWYKyVGLEGLTVGVDKFGM-SAPGD----IVMTEYGMTPE 673
                  5666899*******************64........46667777777777.7777777777776666*****************************9.99988....47777777766 PP

>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   5.6e-06     0.015      96     219 ..     128     260 ..     107     265 .. 0.77
   2 ?   -1.4   0.0      0.24   6.5e+02      20      57 ..     633     672 ..     626     682 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.6e-06
                  B----S--SHHTTHHH--HHHHH..........H------EEEEE----TTSHHHHHHHHHHHHCT--E.EEEEEE-SEETTE.CGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EE CS
   PF00676.15  96 flggngivgaqvplvaGialaak..........yegkkevailliGDGatnqGqffealnlAalwklpv.ifvveNNqyaist.eaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvL 219
                  +    g++ga+ +  aGia a+k              ++  ++++GDG   +G  +ea  +Aa  kl   i     N   +   ++  +s+   +  +a g  + +++ dG D+ A+  A ++A+   + + +P +
  MMETSP0890-20130614|27576_1 128 VEATTGPLGAGISNCAGIAAASKmsaalfntdeHTIFDNHIFCIVGDGCLQEGVSAEASCFAAHEKLDNlIVLYDANDVTLDKmAEFTQSEDVGMRYQAYGWDVTILT-DGHDIKAISDALEDAKA--NDNGKPKM 260
                  66678999***99999*******9999998555444467889*************************87577778888877652444455555555568888887775.*************9984..44445555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.24
                  TTSSS--------HHHHHHHHHC..S-TTSEEE--SS-HH CS
   PF00676.15  20 kkrigfvhlsagqealqvgiaaa..lekeDlvistYRehg 57 
                   +++     ++g e l vg+++   + ++D+v+++Y   +
  MMETSP0890-20130614|27576_1 633 AGITAPWYKYVGLEGLTVGVDKFgmSAPGDIVMTEYGMTP 672
                  566666678999********985114556******97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.06u 0.38s 00:00:01.44 Elapsed: 00:00:01.31
# Mc/sec: 1251.23
//
Query:       MMETSP0890-20130614|27587_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.3   0.0       0.84    9.2   0.0    2.6  2  PF13902.1 R3H-associated N-terminal domain


Domain annotation for each model (and alignments):
>> PF13902.1  R3H-associated N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   6.1e-05      0.84     122     154 ..     139     170 ..     102     173 .. 0.88
   2 ?    2.1   0.0    0.0095   1.3e+02     113     135 ..     186     208 ..     174     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 6.1e-05
    PF13902.1 122 qridrrlRaaLkrarlpsefleelEeelrafie 154
                   +id+++R  L+r+ l+ e+++++E ++++ ie
  MMETSP0890-20130614|27587_1 139 AGIDPNVRRRLVRN-LSPETVARVETAIIQYIE 170
                  579***********.666***********9986 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.0095
    PF13902.1 113 dpasaeaafqridrrlRaaLkra 135
                  ++ s e++ q+++++lR+ L + 
  MMETSP0890-20130614|27587_1 186 SELSSEERLQQLSPELRSVLLKP 208
                  67899***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       795  (0.058148); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.90
# Mc/sec: 1259.42
//
Query:       MMETSP0890-20130614|27595_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-27   95.1   0.3      3e-27   94.5   0.2    1.2  1  PF04263.11 Thiamin pyrophosphokinase, catalytic domain
    5.5e-15   54.7   0.1    9.2e-15   53.9   0.0    1.4  1  PF04265.9  Thiamin pyrophosphokinase, vitamin B1 binding domain
     0.0079   15.9   0.0      0.016   14.9   0.0    1.4  1  PF12367.3  Pyruvate ferredoxin oxidoreductase beta subunit C terminal
  ------ inclusion threshold ------
       0.14   11.9   0.2       0.87    9.3   0.1    2.1  2  PF06265.6  Protein of unknown function (DUF1027)


Domain annotation for each model (and alignments):
>> PF04263.11  Thiamin pyrophosphokinase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.2   8.7e-31     3e-27       8     121 ..      41     157 ..      34     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 8.7e-31
                  THHHHHHCTCEEEEE----HHHHHHT..G---SCEE---TTS-HHHHHHHHH-TTEEB----TTS-HHHHHHHHH.TT-SECEEEEE------HHHHHHHCHHHHHHCTTSSEEEEE CS
   PF04263.11   8 lvrdllkkadllvavDgGanelrdll..glkpdlivGDfDSikeelkallkeagaklvktpekdktDlelAlkla.lqleadeivvlgalggRlDhvlanlnlllrlakddleivll 121
                  l+  l++ a+++v++DgGan+l+dl+   l+pd+ivGD+DS + ++ +++k++g+k+ +  ++d +D+++A++++ + l + ++ vlg +ggRlD+ +a + ++lr +++  +i+l 
  MMETSP0890-20130614|27595_1  41 LLSALWSGAKIRVCADGGANKLYDLTdgLLVPDFIVGDLDSARIQVLDFYKQHGTKVERVEDQDLNDFDKAMNTVtQALTEPTVAVLGVFGGRLDQQMAAFDVALRWQSQTEQIFLF 157
                  56789********************9999************************99999999**************44556669************************9888888876 PP

>> PF04265.9  Thiamin pyrophosphokinase, vitamin B1 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   2.7e-18   9.2e-15       2      55 ..     171     229 ..     171     242 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 2.7e-18
                  -EEEE-BTTB..-EEEEEEEEEEEE.EEEESBSSSEEEEEECS-EETCCSEEBS....S CS
    PF04265.9   2 rhqikveeeyegkycgllpvgepse.lttsGlkwnlenqdlefggllstSNefl....d 55 
                  +h+i  ++  +g+ cgl+p+ ++s+ +tt+Gl+wnl +q+lefg+l+s+SN+++    d
  MMETSP0890-20130614|27595_1 171 QHKIIFRTHLQGPSCGLIPIAGKSDyVTTTGLQWNLMEQSLEFGKLVSSSNRVVsnsdD 229
                  68899999999******************************************955544 PP

>> PF12367.3  Pyruvate ferredoxin oxidoreductase beta subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-06     0.016      10      46 ..      87     129 ..      83     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.7e-06
    PF12367.3  10 ykwykerlykl..eedydpsdrekAmkkale..gek..lplGi 46 
                   ++yk++ +k+   ed d +d++kAm+++++  +e    +lG+
  MMETSP0890-20130614|27595_1  87 LDFYKQHGTKVerVEDQDLNDFDKAMNTVTQalTEPtvAVLGV 129
                  689********8778*************999776553455666 PP

>> PF06265.6  Protein of unknown function (DUF1027)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.26   8.9e+02      66      84 ..      12      30 ..       5      32 .. 0.78
   2 ?    9.3   0.1   0.00026      0.87      35      67 ..      73     104 ..      62     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.26
    PF06265.6 66 stledYlleycnfGcayfv 84
                 ++ ++ ++++c+fG+   +
  MMETSP0890-20130614|27595_1 12 KKCNEKMHDMCEFGAEALI 30
                 567788999*****97666 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00026
    PF06265.6  35 DyivgDwgyeqLrLkGfykdekkkaekdkkist 67 
                  D+ivgD+ + ++++  fyk++ +k e + + + 
  MMETSP0890-20130614|27595_1  73 DFIVGDLDSARIQVLDFYKQHGTKVE-RVEDQD 104
                  9******************9988873.333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.88
# Mc/sec: 746.14
//
Query:       MMETSP0890-20130614|27606_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.77
# Mc/sec: 818.50
//
Query:       MMETSP0890-20130614|27613_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.30s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 351.19
//
Query:       MMETSP0890-20130614|27621_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-103  347.1   0.0   1.5e-103  346.9   0.0    1.0  1  PF01019.16 Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> PF01019.16  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.9   0.0  1.1e-107  1.5e-103      13     510 .]       1     507 [.       1     507 [. 0.92

  Alignments for each domain:
  == domain 1    score: 346.9 bits;  conditional E-value: 1.1e-107
                  HHHHHHHHHHHHSTTT-----EEEEEEE----EEEEEEE------TT--TTTT.......T--B-CHHHHTTGTT---------HHHHHHH-----HHHHCHHHHHHHH---B--HHHHHHHHHCHHHHTTSHHHHHHHCE---E-----B---HHHHHHHHHHHHT--HHHH---HHHHHHHHHHH------HHHHHH---EEE--BEEE---EEEEE-TTB----HHHHHHHHHCTS-GGGS-TT-HHHHHHHHHHHHHHHHHHHHH-SSTTTSS--S.HHHHT-HHHHHHHHHT-BTTB--SGGGSS----GGG-......---XEEEEEEXXXXXEEEEEEEXSSXXXXXXBXTTXXXBXXXGGGGSBXXXXXSXTTSTTBXXTTXXXXBXXXXEEEEE..TTEEEEEEXXXXXXTHHHHHHHHHHHHHTCXXXHHHHHHSXXEEEEET....XSSSX...EEEEXTTSXHHHHHHHH.HXXXEEEEXSXXXXXEEEEEEEC........XXXEEEXEEXTTSTT CS
   PF01019.16  13 AavAaalclgVvephssGiGGggfmlvydaktkkvevidaretaPaaatkemy.......dekgdeklsktGalavaVPGevagleealkryGklpladllepAiklaeeGfpvspelaaalaskeerltedpelaeiflpngkvlkaGellkqpalAktLeelaeegpeaFYeGelAealvkelqkagGiltaeDLanykveveeplsadyggytvyepppssqGavllqiLnilegfdlkslgknsaeyvhllvEamklayadRsrylgDpdfvpvpesledllskeyakerrklinpkaakesseyyeaaeaaee......dggTthlsvvDreGnaVSatssinllFGSgvvvpgtGilLnnemddfsenafglapshanalePgkRplssmaPtivlk..dgkpvlvlGapGGsriiqavlqvllnvldlgldlqeavdaprlhhesk....qllpd...vvevEegfseevvaeLe.arghkveeveasssvvaavvvlk........ekgvleaasdpRkdg 510
                  Aa+A+a++l+V+ep s+ +GG++f+l+ d++    + ++++++++++at+e +       +++++ + ++  ++ v+VPG+va+++++++++G+l+l+++l+pAi+la+ Gf + ++ ++a+++        p++ ++ l+  k ++ + ++++p++A++Lee+a  g +aFY G++Aea+  ++++agG l+ +DLa++++e ++++s+++ g tv+e+ p+  G+v+l +Lnil+++  +++ +n+a+ +h ++Ea+++++ + ++ lg    +p    +++lls+e a +++++i+p +a++ ++++e++ +          ++T+ ++v+D++G+aVS+++s +++FGS++  +  G+ L+n++++f+     + ++h n+++P+k+p+++++P++v++  dg   ++l  +GG +++++++q l+n++ lg ++q++vdapr++ ++             ++++E+ ++  ++++L+ ++gh+++  +++  ++ a +v k        e+g l+a+sd R dg
  MMETSP0890-20130614|27621_1   1 AAIAMAAVLCVTEPGSTDLGGDCFALIFDKGYV--LGVNGSGRSSRHATRERVmrdlnldHDDHQLEPATFNGHNVTVPGCVAAWCDMHQNFGTLSLRQILTPAIRLAKYGFCLGDKAQKAVDEC---NLYAPKFIATLLK--KNPQNQVVVQRPEMAQVLEEIAMYGSKAFYFGKTAEAIEYAVKNAGGCLDVQDLAQHSTEFTQAISTQFAGVTVWEHRPNCAGIVVLVALNILNKLLPSDIYENQAKLLHFMIEALRWSFFECRKNLGSD-NTP----VSNLLSDEIATRLASQIEPHTATAVKKIQEQESQFLSeilhfgGTDTVSFQVIDAQGQAVSFVNSTYQSFGSKLSAR--GFSLQNRGHNFT-----TLKNHINCIAPQKKPYHTIMPCLVTRpsDGALLATLTNMGGFMQPSGHVQHLVNLFILGNSPQASVDAPRFCLKNIdkpfG---SmdpTTYFEPHIDTTILKSLQnDYGHSISLLPKGDVFTCAKTVGKaqiilhdpETGLLRAGSDQRADG 507
                  9***************************98766..568****************99998656666666778899*******************************************99999765...4566777788888..89***********************************************************************************************99999999**************98877768855.344....89**********************966666666655556778899*******************************9..************.....99************************99999999***************************************77665553...1344*****************9****************999999999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       459  (0.0335723); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.84
# Mc/sec: 1483.46
//
Query:       MMETSP0890-20130614|27643_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-36  122.7   0.0    1.1e-35  122.2   0.0    1.1  1  PF08670.6 MEKHLA domain


Domain annotation for each model (and alignments):
>> PF08670.6  MEKHLA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0   7.9e-40   1.1e-35       5     146 ..      70     208 ..      66     209 .. 0.92

  Alignments for each domain:
  == domain 1    score: 122.2 bits;  conditional E-value: 7.9e-40
    PF08670.6   5 tlarlllqSyrrllgreLlksedsskesllkaLfe.apdavlchslk.adPvftyANqaaldllettlvelqdlplrkiaeesgrkeraselakvmqqgfaelysGvrisskGrrfsieqavvWkvldeeeavhgqAamfvnws 146
                  ++++ l +S +rl gr L++s      + ++aL e  + + ++h++  + P+f+yA +aaldl+e++++e++  p+r++a+e+ r+era++l++v++qg++++ysG+ris++Grrf i +++vW+v d ++++ gqAa+f +++
  MMETSP0890-20130614|27643_1  70 EWIANLDSSLERLSGRRLVRS-----LTECQALAEnERLVCVSHDTTeSGPIFNYATRAALDLWEMDWDEFVSTPSRQSAQEDAREERARLLDTVSRQGYIDNYSGIRISKSGRRFKISNVLVWNVDDTQGNRLGQAALFDRFQ 208
                  67888999************9.....3457778774667889**987478******************************************************************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 651.32
//
Query:       MMETSP0890-20130614|27637_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-10   38.1   0.0    1.5e-09   37.5   0.0    1.3  1  PF04727.8 ELMO/CED-12 family
  ------ inclusion threshold ------
      0.021   15.1   0.8      0.055   13.7   0.3    1.9  1  PF12168.3 DNA polymerase III subunits tau domain IV DnaB-binding


Domain annotation for each model (and alignments):
>> PF04727.8  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.1e-13   1.5e-09      27     120 ..      84     218 ..      55     253 .. 0.68

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 2.1e-13
    PF04727.8  27 klwklafpd........ekessrisekWkklGFqgsdPatDfrgtGlLgLenLlyfaenypdafqkllkeqskreke...................................eeypfavvsinlTavllellrigel 120
                    w++ f+          +  +r+ e+W++lGF ++dP+  +r+ GlL+L+ L +++++yp+  ++l + +s+ +                                      e  f +v+i l+ +  e+l+i+++
  MMETSP0890-20130614|27637_1  84 SFWEACFSLlsssdtnkLSIYERRGESWRRLGFATQDPSDAIRAGGLLSLRALEFLIDRYPE--KSLFLLNSHTPLGeagvavcreiarlcdigsplglaprqktfwgaleePETFFELVAIGLSVFGREYLQINQA 218
                  44444444444344444555677777************************************..5555555555433345666666666666666666666555555555544555555555555555555555444 PP

>> PF12168.3  DNA polymerase III subunits tau domain IV DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   8.1e-06     0.055       9      36 ..      36      65 ..      27      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.1e-06
    PF12168.3  9 qgstktKKseaasakkar..tSvLeRlAqv 36
                  +s+++KK+++as++  +  +++L+Rl   
  MMETSP0890-20130614|27637_1 36 GESSSPKKNKPASPSAIApsKAALDRLRYL 65
                 6899***********99999******9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.81
# Mc/sec: 1044.34
//
Query:       MMETSP0890-20130614|27627_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-75  252.9   6.4    2.8e-74  250.2   4.4    1.9  1  PF01602.15 Adaptin N terminal region
    1.9e-25   89.2   0.8    1.9e-25   89.2   0.6    2.1  2  PF02883.15 Adaptin C-terminal domain
    7.4e-08   32.3   4.5    1.8e-05   24.5   0.2    3.0  3  PF12717.2  non-SMC mitotic condensation complex subunit 1
     0.0023   18.0   8.3       0.14   12.3   0.7    5.0  4  PF13646.1  HEAT repeats
      0.006   15.7   0.0      0.014   14.5   0.0    1.6  1  PF00768.15 D-alanyl-D-alanine carboxypeptidase
  ------ inclusion threshold ------
      0.016   15.1   1.6        3.4    7.8   0.0    4.7  4  PF02985.17 HEAT repeat
      0.061   13.2   0.8       0.33   10.8   0.1    2.2  2  PF11580.3  Protein of unknown function (DUF3239)
      0.068   12.7   0.3       0.26   10.8   0.1    2.0  2  PF00635.21 MSP (Major sperm protein) domain
      0.085   11.5   0.2       0.22   10.1   0.1    1.7  1  PF03081.10 Exo70 exocyst complex subunit
       0.19   11.5   3.9       0.61    9.9   0.0    3.8  5  PF10363.4  Protein of unknown function (DUF2435)
       0.98    8.8   7.1        2.6    7.4   0.2    2.9  3  PF08623.5  TATA-binding protein interacting (TIP20)


Domain annotation for each model (and alignments):
>> PF01602.15  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.2   4.4   2.2e-77   2.8e-74     137     520 ..       2     454 ..       1     456 [. 0.92

  Alignments for each domain:
  == domain 1    score: 250.2 bits;  conditional E-value: 2.2e-77
   PF01602.15 137 lklykkdpdlvrkelieeikellsdkdpgVvlaAvalleei........kkndrlll.........kllpklvrrLcnll...........telnpwlqvkiiklltrlarqepeerskkellesllnllq.......ssnnaVlletvklivelapknelivlavnaLvrllsskdenlryvaLrnlnkileke.kavq.hkdlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvsevadee.fksklvkaIgrlaekfatdaewvldvllellslsgeyv.kdeivevirdiiqkvpelhekivekLaellek...iespearaaaiWllGeygelven...........................................te.sasdllrslaekfvlesekvklailtalvKlsltspdketqeeliqlvlslatqdssdlelrdRaveylqlls 520
                  +++++k p+l ++ +i++i++ll+d+++gV+ + ++l++ +        +      +         +++p+lv+ L+nll           ++ +p+lqvk+++ll++l ++++e++   e ++++l++++       +++na+l+e+v++i++++ ++ l+vla+n+L+r+l ++d+n+ryvaL++l k+++ + +avq h+ +++++lk d+dvsir++al+l ++lv+e+Nv+e+v+e+++y+  va++   ++ l + I+++ ekf ++ +w l vl+ +ls++g+y  ++ +++ +  + +   +l++++  kL+ ll +   + + +++ + +W++Ge+ge +                                             +  ++  ll+ +++++ l+++++k+++ltal+Kl ++ p    q e+ +lv  ++t  s +lel++R++ey +ll 
  MMETSP0890-20130614|27627_1   2 IRVLQKVPELTED-YIDRIVSLLKDRSHGVLITCIQLMTALlgddkeqiE------IseevkkrfsRVVPSLVKMLRNLLnlgyspdhdiaGIADPFLQVKLLRLLQALGHKNDEAS---EAMNDVLAQVAtntetnrNAGNAILYECVRAIMTVEAEAGLRVLAINILGRFLLNRDNNIRYVALNSLTKVVTEDvTAVQrHRSTILDCLK-DPDVSIRQRALELTYQLVNEQNVQELVREMLNYL-IVATGNdHRAHLCSRIATVVEKFSPSPKWQLEVLFAMLSIAGDYCdDSVAASTVTHVCVADTTLQAYATHKLFHLLRDelpQVQLALVHVTVWCVGEFGECLLSgceipagsaddfglvftasttsekdgtkntiltsmkrtsfeaiEVaEILGLLEAVLKSH-LATVQTKSYVLTALAKLANKLPV--GQAEIADLVAAYTT--SMNLELQQRSCEYATLLA 454
                  7899******999.6**************************997665552......223333466699999999999999*******************************999999...6899***999999******************************************************************************.*********************************9.55554449*************************************4445567899************************99999999****************9****************************************7753356666777777665.56666*****************5..4569**********..99************9986 PP

>> PF02883.15  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       7.2   8.9e+03      66      85 ..     500     520 ..     494     525 .. 0.58
   2 !   89.2   0.6   1.5e-28   1.9e-25       3     115 .]     598     708 ..     596     708 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 7.2
                  ------EE---EES...---- CS
   PF02883.15  66 ppgtqiqqvllven.refsep 85 
                   ++ q+q +++  n ++++++
  MMETSP0890-20130614|27627_1 500 SAQVQVQKEITAPNpNPNNTQ 520
                  445666666666665555554 PP

  == domain 2    score: 89.2 bits;  conditional E-value: 1.5e-28
                  EEEEE-SSEEEEEEEE..EESSSEEEEEEEEEE-SSS-EEEEEEEEE--TTSEE-----S-S-B--..----EE---EES..--------EEEEEEEEEEETTEE..EEEEEEEE- CS
   PF02883.15   3 vilyeddglqIgfkfek.perpnqiritlfftNkssqpitnfsfqaavpkslklqlqppssttlpp..gtqiqqvllvenrefsepakkklrlrvrisytvggsqvlelkdvnefp 115
                  + ++e+dglq+ +++++ +++++++ i  +f N +++++  f+fqaavpk ++++++p+s  ++p+  + q+ q ++v+n     +++k+l++r++i y vgg q++e+ +vn+fp
  MMETSP0890-20130614|27627_1 598 IKAFEKDGLQVMMELSReSPNSSLLDIMCTFRNFTTKDMDRFVFQAAVPKYITMEMKPASAAVVPAsnSSQVSQLIKVTN-----NTPKPLMMRLKIRYVVGGRQIEEQAQVNSFP 708
                  789*****************************************************************************.....99****************************9 PP

>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0013       1.7      17      57 ..       6      46 ..       1      74 [. 0.91
   2 !   24.5   0.2   1.5e-08   1.8e-05      30     111 ..     160     240 ..     155     264 .. 0.86
   3 ?   -2.5   0.0       2.8   3.5e+03      15      41 ..     293     319 ..     286     325 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0013
    PF12717.2 17 vrypnlvdpyleklyacLkdedalvRktallvlshLiledm 57
                 +++p+l++ y++++++ Lkd++  v  t++ +++ L+  d 
  MMETSP0890-20130614|27627_1  6 QKVPELTEDYIDRIVSLLKDRSHGVLITCIQLMTALLGDDK 46
                 6899********************************98875 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 1.5e-08
    PF12717.2  30 lyacLkdedalvRktallvlshLiledmvKvkgqlflemlkllaDedeeiralAelffsellkkknpnllynllpelisvLn 111
                  l ++L ++d+ +R++al+ l++ + ed+  v+ +  + +l +l D+d  ir+ A  +  +l++++n + l+  +  +++v +
  MMETSP0890-20130614|27627_1 160 LGRFLLNRDNNIRYVALNSLTKVVTEDVTAVQRHR-STILDCLKDPDVSIRQRALELTYQLVNEQNVQELVREMLNYLIVAT 240
                  6688999****************************.***************************9887777777776666654 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 2.8
    PF12717.2  15 LcvrypnlvdpyleklyacLkdedalv 41 
                   cv  ++l  + + kl++ L+de + v
  MMETSP0890-20130614|27627_1 293 VCVADTTLQAYATHKLFHLLRDELPQV 319
                  577777888888999999999998877 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.077        96      29      71 ..      12      70 ..       1      74 [. 0.64
   2 !   12.3   0.7   0.00011      0.14      10      69 ..     165     230 ..      88     253 .. 0.73
   3 !    8.1   0.1    0.0022       2.8       5      69 ..     198     230 ..     195     339 .. 0.78
   4 ?   -0.2   0.1      0.85   1.1e+03      30      73 ..     386     436 ..     356     470 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.077
    PF13646.1 29 seealpaLlelLkdsdpevRraAaeaLgkl...............gd.pealpaLlkll 71
                 +e+ ++ +++lLkd +  v +++++ + +l               +   +++p L+k+l
  MMETSP0890-20130614|27627_1 12 TEDYIDRIVSLLKDRSHGVLITCIQLMTALlgddkeqieiseevkKRfSRVVPSLVKML 70
                 45779999************999999998765443333333222211244666666666 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00011
    PF13646.1  10 kdpdpevraaaieaLgqlgseea......lpaLlelLkdsdpevRraAaeaLgklgdpealpaLlk 69 
                   + d+++r  a++ L +  +e++        ++l++Lkd+d ++R+ A+e   +l +++ ++ L++
  MMETSP0890-20130614|27627_1 165 LNRDNNIRYVALNSLTKVVTEDVtavqrhRSTILDCLKDPDVSIRQRALELTYQLVNEQNVQELVR 230
                  245556666666666655555445566668888888888888888888887777777666666665 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0022
    PF13646.1   5 laaLekdpdpevraaaieaLgqlgseealpaLlelLkdsdpevRraAaeaLgklgdpealpaLlk 69 
                  l+ L kdpd ++r++a+e+  ql +e+ +++L+                               +
  MMETSP0890-20130614|27627_1 198 LDCL-KDPDVSIRQRALELTYQLVNEQNVQELV-------------------------------R 230
                  4555.6777777777777777665554433333...............................2 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.85
    PF13646.1  30 eealpaLlelLkdsdpe..vRraAaeaLgklgd.....pealpaLlklldd 73 
                  +e+l +L ++Lk+  +   ++  ++ aL+kl++     ++ ++ L+ + ++
  MMETSP0890-20130614|27627_1 386 AEILGLLEAVLKSHLATvqTKSYVLTALAKLANklpvgQAEIADLVAAYTT 436
                  455666666666655441134444466666653222223344444444444 PP

>> PF00768.15  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05     0.014      23     122 ..     161     259 ..     142     262 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
                  --EEEEESTTS-.BE-GGGCHHHHHHHHHCTTT.--T.TTTCEEEHHHHHHCHHTG.T--TTS-----EEEHHHHHHHHTTT---HHHHHHHHHH---HHHH CS
   PF00768.15  23 GkvLyeknader.reiASitKlmTayvvlealkkgkl.keddtvtisesayalgnnkkssnvflkkgdkvtvkdLleglllssgndAavAlAekiaGsekaF 122
                  G+ L +++++ r ++  S+tK++T+ v   + ++  + +  +  ++s  + al+     ++ + +++ +  v+++l+ l+++ gnd  + l   ia   ++F
  MMETSP0890-20130614|27627_1 161 GRFLLNRDNNIRyVALNSLTKVVTEDVTAVQRHRSTIlDCLKDPDVSIRQRALE---LTYQLVNEQNVQELVREMLNYLIVATGNDHRAHLCSRIATVVEKF 259
                  66677766665437899*********9888875544314433334444333333...469**************************9999999999888877 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.4   2.9e+03       4      27 ..      18      41 ..      16      43 .. 0.80
   2 ?    0.5   0.0      0.64     8e+02       8      28 ..     163     183 ..     156     185 .. 0.77
   3 ?    7.8   0.0    0.0028       3.4       4      27 ..     196     219 ..     194     222 .. 0.85
   4 ?    0.9   0.0      0.45   5.6e+02       5      20 ..     308     323 ..     306     338 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.4
                 HHHHHHTSSSHHHHHHHHHHHHHH CS
   PF02985.17  4 lllkllnDpspeVReaAaeaLgal 27
                  +++ll+D s  V  ++++ ++al
  MMETSP0890-20130614|27627_1 18 RIVSLLKDRSHGVLITCIQLMTAL 41
                 68999***9998888888877776 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.64
                  HHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   8 llnDpspeVReaAaeaLgala 28 
                   l   + ++R+ A+++L+ ++
  MMETSP0890-20130614|27627_1 163 FLLNRDNNIRYVALNSLTKVV 183
                  56667889********98765 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0028
                  HHHHHHTSSSHHHHHHHHHHHHHH CS
   PF02985.17   4 lllkllnDpspeVReaAaeaLgal 27 
                   +l +l+Dp+ ++R+ A+e   +l
  MMETSP0890-20130614|27627_1 196 TILDCLKDPDVSIRQRALELTYQL 219
                  6899*************9976666 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.45
                  HHHHHTSSSHHHHHHH CS
   PF02985.17   5 llkllnDpspeVReaA 20 
                  l +ll+D+ p+V  a 
  MMETSP0890-20130614|27627_1 308 LFHLLRDELPQVQLAL 323
                  7799999999998875 PP

>> PF11580.3  Protein of unknown function (DUF3239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00026      0.33      31     111 ..     117     197 ..     111     201 .. 0.76
   2 ?   -0.3   0.0      0.71   8.9e+02      14      49 ..     654     689 ..     647     703 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00026
    PF11580.3  31 llalvnasveeaakprialvtrtvreidgverklGervpavavttgrr..errdqdrwdeispmPiawgTrDaavirrAesai 111
                  +la v +++e + ++  a+++  vr+i +ve + G rv a+ +  gr   +r+++ r+  ++++  +  T+D ++++r +s+i
  MMETSP0890-20130614|27627_1 117 VLAQVATNTETNRNAGNAILYECVRAIMTVEAEAGLRVLAINIL-GRFllNRDNNIRYVALNSL-TKVVTEDVTAVQRHRSTI 197
                  89****************************************99.5541123333344444444.345666666666666665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.71
    PF11580.3  14 ydlvpAvvaevnprdlvllalvnasveeaakprial 49 
                   +  +Avv   n+ ++  l  v  ++++ + +r ++
  MMETSP0890-20130614|27627_1 654 KPASAAVVPASNSSQVSQLIKVTNNTPKPLMMRLKI 689
                  56779999999******9999999999977777765 PP

>> PF00635.21  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4   1.7e+03      62      87 ..     623     644 ..     591     647 .. 0.72
   2 ?   10.8   0.1   0.00021      0.26       2      39 ..     651     688 ..     650     690 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.4
                  EEEEEEE-----TTS.ECEEEEEEEE CS
   PF00635.21  62 eitvtrqpqdkededkkkdkfviqyl 87 
                  +i +t+++++++d     d+fv+q++
  MMETSP0890-20130614|27627_1 623 DIMCTFRNFTTKD----MDRFVFQAA 644
                  3444555555444....689998876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00021
                  CEEESSSEEEE----SS-EEEEEEEEB-SSS-EEEEEE CS
   PF00635.21   2 lkidPsdllvfaaegnkqgtsklklkNtskkrvaFKvK 39 
                  ++++P++  v +a++++q+++ +k++N++ k+++ + K
  MMETSP0890-20130614|27627_1 651 MEMKPASAAVVPASNSSQVSQLIKVTNNTPKPLMMRLK 688
                  67899999999**9*******************99887 PP

>> PF03081.10  Exo70 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00018      0.22     103     158 ..     187     243 ..      23     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00018
   PF03081.10 103 nellkklsetaseifeefiesiksk.vqsvktvpsdggvhelTvyvmnylrlLseyk 158
                   +++++ ++t+ +++++   si+++  + + +++++ +v+el+++++nyl   + ++
  MMETSP0890-20130614|27627_1 187 VTAVQRHRSTILDCLKDPDVSIRQRaLELTYQLVNEQNVQELVREMLNYLIVATGND 243
                  45689999*****************9999********************98777655 PP

>> PF10363.4  Protein of unknown function (DUF2435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.9   2.3e+03      80      80 ..      49      49 ..      12     124 .. 0.57
   2 ?    9.9   0.0   0.00049      0.61       6      47 ..     194     233 ..     188     243 .. 0.81
   3 ?   -2.0   0.0       2.6   3.2e+03      49      68 ..     391     416 ..     374     438 .. 0.46
   4 ?   -3.2   0.0         6   7.4e+03      10      28 ..     450     468 ..     444     471 .. 0.82
   5 ?   -1.5   0.0       1.8   2.2e+03      43      66 ..     621     645 ..     603     651 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.9
    PF10363.4 80 v 80
                 +
  MMETSP0890-20130614|27627_1 49 I 49
                 1 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00049
    PF10363.4   6 lkkalkslqdplvPvrahgLllLrrlvekksaedvadvpkil 47 
                   +++l+ l+dp v++r ++L l  +lv++++   ++ v ++l
  MMETSP0890-20130614|27627_1 194 RSTILDCLKDPDVSIRQRALELTYQLVNEQN--VQELVREML 233
                  5679999**********************99..555555555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.6
    PF10363.4  49 lllsqlkde......dsfvYLnaikg 68 
                  ll   lk +       s+v  +  k+
  MMETSP0890-20130614|27627_1 391 LLEAVLKSHlatvqtKSYVLTALAKL 416
                  44333333333333345653333333 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 6
    PF10363.4  10 lkslqdplvPvrahgLllL 28 
                   + l+d   +vr ++L+ +
  MMETSP0890-20130614|27627_1 450 ATLLADRWAAVRPEALARM 468
                  567999999*****99876 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 1.8
    PF10363.4  43 vpkilellls.qlkdedsfvYLnai 66 
                  +  i+  + +   kd d fv+ +a+
  MMETSP0890-20130614|27627_1 621 LLDIMCTFRNfTTKDMDRFVFQAAV 645
                  4444444444135788999999887 PP

>> PF08623.5  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.016        20      65     117 ..      13      72 ..       3     123 .. 0.82
   2 ?    7.4   0.2    0.0021       2.6      48     113 ..     137     203 ..     134     236 .. 0.81
   3 ?   -2.8   0.1         3   3.7e+03      53     116 ..     373     439 ..     369     447 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.016
    PF08623.5  65 aelleriiaGLkD.eedikllallmlskl......aslapeeilarldalaealkktlsk 117
                  +++++ri++ LkD ++ + + ++++++ l      ++   ee+++r+++++ +l k+l+ 
  MMETSP0890-20130614|27627_1  13 EDYIDRIVSLLKDrSHGVLITCIQLMTALlgddkeQIEISEEVKKRFSRVVPSLVKMLRN 72 
                  56799********99*******99999999999954444567778877666666666543 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0021
    PF08623.5  48 yetlytlLetalskldiael.leriiaGLkD.eedikllallmlsklaslapeeilarldalaealkk 113
                  ye++ +++++  +   ++ l ++++   L   +++i+ +al  l+k+++ + ++++++ +++++ lk 
  MMETSP0890-20130614|27627_1 137 YECVRAIMTVEAEA-GLRVLaINILGRFLLNrDNNIRYVALNSLTKVVTEDVTAVQRHRSTILDCLKD 203
                  9*****99755544.44444478888888888**************************9999888875 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3
    PF08623.5  53 tlLe.talskldiaelleriiaGLkD.eedikllallmlsklaslapee.ilar.ldalaealkktls 116
                  t ++ t+++ +++ae+l  ++a Lk     +++ +++ l+ la+la ++ + +  +  l++a+++ ++
  MMETSP0890-20130614|27627_1 373 TSMKrTSFEAIEVAEILGLLEAVLKShLATVQTKSYV-LTALAKLANKLpVGQAeIADLVAAYTTSMN 439
                  4444566777777777777777777633444444443.333333333320222235555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:01.12
# Mc/sec: 1505.68
//
Query:       MMETSP0890-20130614|27655_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 222.82
//
Query:       MMETSP0890-20130614|27650_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-10   40.1   0.1    6.3e-10   39.0   0.1    1.5  1  PF00638.13 RanBP1 domain
    1.3e-06   28.5   2.1    1.3e-06   28.5   1.5    2.8  3  PF08911.6  NUP50 (Nucleoporin 50 kDa)


Domain annotation for each model (and alignments):
>> PF00638.13  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   9.2e-14   6.3e-10       6      74 ..     253     320 ..     249     332 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 9.2e-14
                  -TTEEEEEEE--EEEEEETTTTEEEE-----EEEEEETTT--EEEEEEETTTTEEEEEEE--TTS-EEE CS
   PF00638.13   6 EEdEevlfkqraKLfrfdaekkewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkp 74 
                  + dE++lf+ ra + r+d  +++wk+ G G  +++++k++++ R+++R d v kv++N  i ++m ++ 
  MMETSP0890-20130614|27650_1 253 DGDENELFESRAGIRRLDLATRSWKDLGKGTARLMQHKSTQAKRMIVRND-VGKVVLNFKIDPKMIFTQ 320
                  569********************************************976.9***********997754 PP

>> PF08911.6  NUP50 (Nucleoporin 50 kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.5   1.9e-10   1.3e-06       8      61 ..       3      58 ..       1      71 [. 0.75
   2 ?   -2.1   0.2      0.68   4.6e+03      51      64 ..     193     206 ..     175     212 .. 0.67
   3 ?   -0.6   0.2      0.22   1.5e+03      18      35 ..     232     250 ..     225     251 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.9e-10
    PF08911.6  8 qLtkdnw.deedeaeeagtfkkASeevLkkRkIkkakrrkkagass.sssesksaf 61
                 qL k+ + d+e e  eag+fk+AS+ + +kR+I+++  r + +a++ +++++ +a 
  MMETSP0890-20130614|27650_1  3 QLRKEEYeDQENEVVEAGSFKRASASEIAKRRIVSVSSRFQKSATKdTEKAATPAV 58
                 899999*999999***********************99986666666344434433 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.68
    PF08911.6  51 sssssesksafkgF 64 
                  ++++ ++++ f++F
  MMETSP0890-20130614|27650_1 193 AQNPPKNSGLFSPF 206
                  33566677777777 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.22
    PF08911.6  18 de.aeeagtfkkASeevLk 35 
                  ++ +e+++ +k+A++ vL+
  MMETSP0890-20130614|27650_1 232 QNaQEDEDMPKEAPSQVLR 250
                  3347888899999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.68
# Mc/sec: 1275.71
//
Query:       MMETSP0890-20130614|27657_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   16.0   6.0      0.057   14.1   4.1    1.9  1  PF13469.1 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.1   4.2e-06     0.057       2     190 ..      65     264 ..      64     348 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.2e-06
    PF13469.1   2 pvfilGlpRSGttlLaraLlalhpaelgllapqapal.............adapkglaeraallpllradllsalrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahl.lfpd.rfvvllRdPlavlasllrlllasllrrspyalrlalrkleallrllllgla........larlwlelne...............e 190
                   + i+G+p SG+ +L+r L       lgl++++++ +             + +   ++++a++ +  ++  l a++ +++     +++ ++                ++ r  +l++ ++ ++++ + ++k +  l ++p   +++  R+Pl+ l s    l+a + +rsp     +l + + l+++ +l+ a         ar+wl++++               e
  MMETSP0890-20130614|27657_1  65 RIAIIGMPGSGSVSLTRDLR-----RLGLDMTHESSDgkdgsvswlhlslYVNTVSNSSCARFIRGGWHVQLIAPDVPCPSDNGEGHWTLV----------------RKVRKCWLDQCQAALDRWAGCAAKGNCPLpFLPKpQILI--RHPLRTLES----LAAGFCPRSPTDEVPLLTAAKSLFAFPRLDNAstlncmdaFARFWLDFYDtaksvqpdlslwlrrE 264
                  689*****************.....777777777777666666555444444444444444444444444444444444444444444444................447777777777777777777666666667666667777..*********....777777777777777777777777777777778889999999999999998877765555544430 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:01.95
# Mc/sec: 485.42
//
Query:       MMETSP0890-20130614|27660_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-25   86.4   0.3    4.1e-06   26.2   0.0    5.1  5  PF00023.25 Ankyrin repeat
    2.9e-22   78.6   0.0    4.2e-07   30.0   0.0    3.3  3  PF12796.2  Ankyrin repeats (3 copies)
    7.5e-20   68.9   0.4    0.00037   20.3   0.0    5.6  6  PF13606.1  Ankyrin repeat
    6.7e-18   64.5   0.2    2.8e-06   27.5   0.1    4.2  4  PF13637.1  Ankyrin repeats (many copies)
    4.5e-16   58.3   2.4      0.028   14.5   0.1    5.5  5  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.94   2.6e+03       7      19 ..      29      41 ..      26      45 .. 0.79
   2 !   26.2   0.0   1.5e-09   4.1e-06       2      26 ..      65      89 ..      64      90 .. 0.96
   3 !   20.8   0.0   7.5e-08    0.0002       3      21 ..     101     119 ..     100     126 .. 0.94
   4 !   13.5   0.0   1.5e-05     0.041       2      18 ..     133     149 ..     132     162 .. 0.82
   5 !   19.3   0.0   2.3e-07   0.00064       2      32 ..     179     209 ..     178     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.94
                 HHHHHTTHHHHHH CS
   PF00023.25  7 HlAalrgnlevvk 19
                  +A+ rg+le v+
  MMETSP0890-20130614|27660_1 29 FVACWRGDLEKVR 41
                 58*****998665 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.5e-09
                 SCBHHHHHHHTTHHHHHHHHHHTTS CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGA 26
                 G T LH+A++ g+ ++v++Ll++GA
  MMETSP0890-20130614|27660_1 65 GLTLLHVASYFGHESIVSMLLERGA 89
                 99**********************9 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 7.5e-08
                  CBHHHHHHHTTHHHHHHHH CS
   PF00023.25   3 fTPLHlAalrgnlevvklL 21 
                  +T+LH+A++rg+++vv+ L
  MMETSP0890-20130614|27660_1 101 WTCLHMACIRGHANVVRIL 119
                  7****************98 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 1.5e-05
                  SCBHHHHHHHTTHHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlevv 18 
                   +TPLHlAa+ gn+e +
  MMETSP0890-20130614|27660_1 133 NRTPLHLAAFVGNMEAL 149
                  58***********9875 PP

  == domain 5    score: 19.3 bits;  conditional E-value: 2.3e-07
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  G+TPL  A++  + + v++Ll+qGA l ++d
  MMETSP0890-20130614|27660_1 179 GDTPLDEACSGKQWKTVRFLLQQGATLLHTD 209
                  99***********************988776 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     2e-10   5.5e-07      25      84 ..      14      90 ..       1      95 [. 0.74
   2 !   30.0   0.0   1.5e-10   4.2e-07      28      84 ..     102     158 ..      91     163 .. 0.92
   3 !   27.6   0.0   8.6e-10   2.3e-06      24      85 ..     133     205 ..     132     209 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2e-10
    PF12796.2 25 l.........getpLhlAaeagnleivklLleagadvnakd........kegntpLhlAvrnghlelvklLlekgad 84
                            ++++++A+++g+le v++ l+++ +  + +        ++g t Lh+A  +gh  +v +Lle+ga 
  MMETSP0890-20130614|27660_1 14 QgiesllrtrPDNCIFVACWRGDLEKVRYGLKMEPNQKEINpneielskESGLTLLHVASYFGHESIVSMLLERGAR 90
                 3333343456677*******************54433222244466899*************************996 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.5e-10
    PF12796.2  28 tpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgad 84 
                  t+Lh A+++g+ ++v++L ++   ++ +d +++tpLhlA+  g+ e++ ++l k  d
  MMETSP0890-20130614|27660_1 102 TCLHMACIRGHANVVRILNSSWSVIQRRDVYNRTPLHLAAFVGNMEALFIMLRKAPD 158
                  68**********************************************999988554 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 8.6e-10
    PF12796.2  24 dlgetpLhlAaeagnleivklLleagadvnakd.............kegntpLhlAvrnghlelvklLlekgadv 85 
                  +  +tpLhlAa  gn e++ ++l +  d  a+              + g tpL  A++ ++ ++v++Ll++ga +
  MMETSP0890-20130614|27660_1 133 N--RTPLHLAAFVGNMEALFIMLRKAPDNLARCqlldsqgyvakddYFGDTPLDEACSGKQWKTVRFLLQQGATL 205
                  4..89*************9999996666533333344444444446**************************976 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.36   9.9e+02       4      20 ..      26      42 ..      24      44 .. 0.87
   2 !   20.3   0.0   1.3e-07   0.00037       2      26 ..      65      89 ..      64      91 .. 0.95
   3 !   14.3   0.0   1.2e-05     0.032       3      22 ..     101     120 ..     101     124 .. 0.91
   4 !    9.2   0.0   0.00051       1.4       1      22 [.     132     153 ..     132     160 .. 0.80
   5 !   16.7   0.0   1.9e-06    0.0052       1      28 [.     178     205 ..     178     207 .. 0.92
   6 ?   -3.6   0.0         5   1.4e+04      17      27 ..     331     341 ..     329     343 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.36
    PF13606.1  4 TpLhlAasngrielvea 20
                 +++++A+ +g +e v++
  MMETSP0890-20130614|27660_1 26 NCIFVACWRGDLEKVRY 42
                 57899******999987 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.3e-07
    PF13606.1  2 GnTpLhlAasngrielveaLlenga 26
                 G T+Lh+A ++g+ ++v+ Lle+ga
  MMETSP0890-20130614|27660_1 65 GLTLLHVASYFGHESIVSMLLERGA 89
                 89*********************97 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 1.2e-05
    PF13606.1   3 nTpLhlAasngrielveaLl 22 
                  +T+Lh+A+ +g+ ++v++L 
  MMETSP0890-20130614|27660_1 101 WTCLHMACIRGHANVVRILN 120
                  79***************985 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00051
    PF13606.1   1 nGnTpLhlAasngrielveaLl 22 
                  +++TpLhlAa  g++e++ ++l
  MMETSP0890-20130614|27660_1 132 YNRTPLHLAAFVGNMEALFIML 153
                  689*******999999875555 PP

  == domain 5    score: 16.7 bits;  conditional E-value: 1.9e-06
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                  +G+TpL+ A+s ++++ v++Ll+ ga +
  MMETSP0890-20130614|27660_1 178 FGDTPLDEACSGKQWKTVRFLLQQGATL 205
                  59*********************99976 PP

  == domain 6    score: -3.6 bits;  conditional E-value: 5
    PF13606.1  17 lveaLlengad 27 
                  l+++ +++g+d
  MMETSP0890-20130614|27660_1 331 LAKLAINSGID 341
                  67889999988 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.1e-07   0.00086       4      54 .]      27      85 ..      24      85 .. 0.80
   2 !   27.5   0.1     1e-09   2.8e-06       2      50 ..     101     149 ..     100     153 .. 0.89
   3 !   12.2   0.0   6.7e-05      0.18      31      54 .]     176     199 ..     164     199 .. 0.90
   4 ?   -2.1   0.0       2.1   5.7e+03      16      30 ..     331     345 ..     329     349 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.1e-07
    PF13637.1  4 aLhyaaisgrlelvklLl.....ekgidinrt...desGntaLhiAalrgnieilklLl 54
                 ++++a+  g+le v++ l     +k i++n +    esG t+Lh+A ++g+ +i+ +Ll
  MMETSP0890-20130614|27660_1 27 CIFVACWRGDLEKVRYGLkmepnQKEINPNEIelsKESGLTLLHVASYFGHESIVSMLL 85
                 67777778888888888866664456789999874488*******************98 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1e-09
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieil 50 
                  +t+Lh+a+i g+  +v+ L ++ +++ ++ d +++t+Lh+Aa  gn+e+l
  MMETSP0890-20130614|27660_1 101 WTCLHMACIRGHANVVRIL-NSSWSVIQRrDVYNRTPLHLAAFVGNMEAL 149
                  89***************96.89***65556************99999876 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 6.7e-05
    PF13637.1  31 desGntaLhiAalrgnieilklLl 54 
                  d +G+t+L+ A+++ +++ +++Ll
  MMETSP0890-20130614|27660_1 176 DYFGDTPLDEACSGKQWKTVRFLL 199
                  889********************8 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 2.1
    PF13637.1  16 lvklLlekgidinrt 30 
                  l+kl +++gid  ++
  MMETSP0890-20130614|27660_1 331 LAKLAINSGIDSRKV 345
                  7899999**995555 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.04   1.1e+02      18      35 ..      26      43 ..      13      56 .. 0.79
   2 !   12.6   0.0     4e-05      0.11      14      40 ..      63      89 ..      50      97 .. 0.86
   3 !   14.5   0.1     1e-05     0.028      11      35 ..     100     119 ..      90     119 .. 0.84
   4 !   11.6   0.0   8.3e-05      0.23      10      38 ..     127     159 ..     124     173 .. 0.74
   5 !   11.8   0.0   7.1e-05      0.19      13      49 ..     176     212 ..     169     216 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.04
    PF13857.1 18 tpLhlAakggalevvrlL 35
                 + + +A+++g+le vr+ 
  MMETSP0890-20130614|27660_1 26 NCIFVACWRGDLEKVRYG 43
                 56668*********9985 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4e-05
    PF13857.1 14 eggntpLhlAakggalevvrlLlapga 40
                 e+g t+Lh+A + g+ ++v +Ll++ga
  MMETSP0890-20130614|27660_1 63 ESGLTLLHVASYFGHESIVSMLLERGA 89
                 6789*******************7665 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 1e-05
    PF13857.1  11 atdeggntpLhlAakggalevvrlL 35 
                  ++     t Lh+A+ +g+++vvr+L
  MMETSP0890-20130614|27660_1 100 WW-----TCLHMACIRGHANVVRIL 119
                  44.....9***************97 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 8.3e-05
    PF13857.1  10 natdeggntpLhlAakggalevvrlLl....ap 38 
                   ++d +++tpLhlAa  g+ e++ ++l    ++
  MMETSP0890-20130614|27660_1 127 QRRDVYNRTPLHLAAFVGNMEALFIMLrkapDN 159
                  57788888***********99998888544444 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 7.1e-05
    PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdg 49 
                  d +g tpL  A++g ++  vr+Ll++ga l ++d ++
  MMETSP0890-20130614|27660_1 176 DYFGDTPLDEACSGKQWKTVRFLLQQGATLLHTDRCM 212
                  77889***********************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.76
# Mc/sec: 1116.20
//
Query:       MMETSP0890-20130614|27675_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-16   58.9  17.7    3.6e-08   33.0   2.8    3.8  4  PF00397.21 WW domain
  ------ inclusion threshold ------
      0.035   13.8   0.3        3.2    7.5   0.1    2.3  2  PF10634.4  Fe2+ transport protein
       0.32   11.4   5.3        9.7    6.6   0.0    3.2  3  PF07486.7  Cell Wall Hydrolase


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   2.3e-11   1.1e-07       1      31 []      14      44 ..      14      44 .. 0.93
   2 !   33.0   2.8   7.9e-12   3.6e-08       5      31 .]      72      98 ..      69      98 .. 0.90
   3 ?   -2.7   0.0       1.2   5.2e+03      19      25 ..     126     132 ..     126     132 .. 0.85
   4 ?    3.0   0.3     0.019        86      22      29 ..     136     143 ..     135     143 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2.3e-11
                 ---SEEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21  1 lppgWeersddd.dGrvYYyNheTgetqWekP 31
                 lp+gW e+ d + +G  Y++N+e ++ +WekP
  MMETSP0890-20130614|27675_1 14 LPEGWSEHID-EaTGARYFWNAEMKTASWEKP 44
                 79****9995.779*****************9 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 7.9e-12
                 EEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21  5 Weersddd.dGrvYYyNheTgetqWekP 31
                 W+++sd + +G +Y++N+eT+ tqWe P
  MMETSP0890-20130614|27675_1 72 WVKHSD-PeTGVPYFVNTETNHTQWEVP 98
                 *99996.448****************99 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.2
                  EETTT-- CS
   PF00397.21  19 yNheTge 25 
                  +N++Tg+
  MMETSP0890-20130614|27675_1 126 FNANTGQ 132
                  79***96 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.019
                  TT--EESS CS
   PF00397.21  22 eTgetqWe 29 
                  +Tg+t+We
  MMETSP0890-20130614|27675_1 136 ATGQTHWE 143
                  6******9 PP

>> PF10634.4  Fe2+ transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.007        32     112     140 ..       7      34 ..       1      44 [. 0.68
   2 ?    7.5   0.1    0.0007       3.2     118     144 ..      66      92 ..      55      99 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.007
                  EEEEEE---TTT-EEE-SS-------SS- CS
    PF10634.4 112 lkfeikpPskkefgrHvDketgvakwfkp 140
                  +k+ +++  + ++  H+D++tg + ++++
  MMETSP0890-20130614|27675_1   7 IKLDVDELPE-GWSEHIDEATGARYFWNA 34 
                  5666655444.79*********9995443 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0007
                  ---TTT-EEE-SS-------SS-EEEE CS
    PF10634.4 118 pPskkefgrHvDketgvakwfkpltve 144
                  + +k+++++H D etgv  ++++ t +
  MMETSP0890-20130614|27675_1  66 KSEKTKWVKHSDPETGVPYFVNTETNH 92 
                  567799***********9877665544 PP

>> PF07486.7  Cell Wall Hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0021       9.7      72      95 ..      20      46 ..       6      57 .. 0.76
   2 ?    2.5   0.1      0.04   1.8e+02      72      91 ..      76      95 ..      64     108 .. 0.80
   3 ?    3.6   0.3     0.018        81      12      45 ..     105     146 ..     100     206 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0021
    PF07486.7 72 k..dptggalyfhnpevapkkwak.sk 95
                 +  d+++ga yf+n e+++++w k ++
  MMETSP0890-20130614|27675_1 20 EhiDEATGARYFWNAEMKTASWEKpRQ 46
                 3358899**********9999987433 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.04
    PF07486.7 72 kdptggalyfhnpevapkkw 91
                  dp +g+ yf+n+e++ ++w
  MMETSP0890-20130614|27675_1 76 SDPETGVPYFVNTETNHTQW 95
                 3899999********77788 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.018
    PF07486.7  12 anVilNRvespefpn.tirgVvyqprgqFspvad.......g 45 
                  a+V   R+  ++++n + +   + ++gqF+ +         g
  MMETSP0890-20130614|27675_1 105 ATVFSSRITTEAYQNySTKATFNANTGQFTSATGqthwetmG 146
                  788899999999999555555555588**9886633333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1186  (0.0867466); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.57
# Mc/sec: 863.51
//
Query:       MMETSP0890-20130614|27709_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 270.56
//
Query:       MMETSP0890-20130614|27704_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-74  248.8   1.7    8.8e-74  248.6   1.2    1.0  1  PF03092.11 BT1 family
     0.0094   14.4   3.0        0.4    9.0   0.3    3.0  3  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF03092.11  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.6   1.2   1.3e-77   8.8e-74      82     430 ..       4     347 ..       1     350 [. 0.92

  Alignments for each domain:
  == domain 1    score: 248.6 bits;  conditional E-value: 1.3e-77
   PF03092.11  82 keasakvaaafiflsslgkalvdvlsdglyselarqepkagpslvSliWlvilvGgiiasvlsGpLldagktrisvlvsaalqlltlvdalvlleerkerealevlelgkpvvpcllgl.nrevisrlwkilvyaeiladtltalsfwalplviakadvfylatnelk..gPnfsyeflgtvkvigsiagligvtlfnrllkklsyRlvfivttvlqvlaglfdlilvkrwnl.klGisDhvyilgdsvvlevlymlkfmPlvvllsrLCPrGsEsvvfAllasianlgqivSsslGalLmeylgvtedqfsnlsllllveslaallplpLlflllpsariiddidedgkavk 430
                  + +s ++  +  ++s++++a++dv++d++++e++r+  +a + l+S+ W+   vG+i as+lsG++l ++ ++   l +a l+ll  v+a  ++ee      l ++e++k ++ + l +  + ++s+lw +l  +++l++ + ++++w++++  a+a +fy++t      g  f++ef+g+   +g++ag +g+  +n +++k ++  +++ t  l+++ g + l+l+ +wn+ +lG++D+++ +gd vv   l  + f+P++vl+s++CP+G+E+++fA l+si nlg ivS++lGalL++++gvt+++f nl+ l+ ++sl++llp+  l ++ + a i+   d d+ avk
  MMETSP0890-20130614|27704_1   4 WSSSQTIFVFTNIVSAAAVAFADVVADSVVVERSRNDDTA-AFLQSVSWGSRYVGSIGASLLSGAALRNFGAKGCWLATAPLPLLVAVAAFAIREE-----PLSSVETKKTENASSLRAeAQGQLSKLWSALTSDQVLRPAV-FIFLWQATPTCASA-FFYFSTGATAdgGLGFDPEFVGRASALGNVAGFLGIASYNAFFSKTRLSTIIGTTSALSAIVGCLPLVLIYHWNRdYLGLPDKFFAIGDGVVQSALGEVGFIPVLVLASKVCPPGIEGSLFAALMSIFNLGGIVSQELGALLTSFFGVTSNDFTNLAPLITLCSLSSLLPILVLDWVKR-AEIVGTGDDDDSAVK 347
                  556777777778899********************99887.9********************************************9999999996.....3344444444344444444899*******************.**************.******999889999***********************************************************9457************************************************************************************************99998.889888888887776 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3   5.9e-05       0.4       8      83 ..       7      82 ..       2     100 .. 0.88
   2 !    2.7   0.0    0.0048        33     221     286 ..     104     168 ..      91     224 .. 0.62
   3 ?    1.6   0.0     0.011        74      53     166 ..     279     308 ..     250     378 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 5.9e-05
   PF00083.19  8 ggflfGYdtgvigatltlikfaknfglltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllval 83
                 + ++f +   v +a++++ +++++  + +++  +++++ l++++ +s  vg++  sl+ g++ + fG k + l+++
  MMETSP0890-20130614|27704_1  7 SQTIFVFTNIVSAAAVAFADVVADSVVVERSRNDDTAAFLQSVSWGSRYVGSIGASLLSGAALRNFGAKGCWLATA 82
                 4588999999*****************999999999*********************************9999876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0048
   PF00083.19 221 dqeiqeekdslersreeeaswkelfsqktvrqrlligvvlqifqql.tGinaimyYsptifetlgls 286
                    +  e  +sl ++ +   + ++l+s  t  q l  +v++ ++q   t   a++y+s+  +++ gl 
  MMETSP0890-20130614|27704_1 104 ETKKTENASSLRAEAQ--GQLSKLWSALTSDQVLRPAVFIFLWQATpTCASAFFYFSTGATADGGLG 168
                  3444444455555544..4566677766644455555555555543166678899998877765544 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.011
   PF00083.19  53 ssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn 166
                  s+f++g++++                                                                                      +G+l+++++g+  n + n
  MMETSP0890-20130614|27704_1 279 SIFNLGGIVS------------------------------------------------------------------------------------QELGALLTSFFGVTSNDFTN 308
                  2222222222....................................................................................23455555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.71
# Mc/sec: 1299.43
//
Query:       MMETSP0890-20130614|27711_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   16.7   0.2     0.0091   15.5   0.0    1.9  2  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.7e-07    0.0091       9     101 ..      70     162 ..      68     275 .. 0.81
   2 ?   -3.3   0.3      0.38   5.2e+03      51      69 ..     346     363 ..     323     374 .. 0.49

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.7e-07
    PF03567.9   9 dkivfcrvpKvasttfkrvlvrlig...............kkctcnrrsinetwlfsrrstgwscglfadltelssteipkrldkyfkfifvRdPfeRllSayrnkcv 101
                  +++v   vp ++s+t  ++l+ l++               +++   ++++n +w+         +  + d+  +      k  d+++ ++  RdP++R +S    k+v
  MMETSP0890-20130614|27711_1  70 NQLVLIKVPETGSSTASNLLAELSErkgvaqawqgqqqsfQEVILETPKKNAKWAL-------GHQPWGDW--I-----TKSFDHPILITTARDPLTRVVSH-TEKRV 162
                  579999*******************8888766665555544555555555555553.......46666666..4.....345678***************94.55554 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.38
    PF03567.9  51 rrstgwscglfadltelss 69 
                     + +++ ++  ++e s+
  MMETSP0890-20130614|27711_1 346 GH-HTHHHRKLLSWSEESQ 363
                  22.2224455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1424.12
//
Query:       MMETSP0890-20130614|27723_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       118  (0.00863078); expected 273.4 (0.02)
Passed bias filter:                      116  (0.00848449); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.54
# Mc/sec: 226.32
//
Query:       MMETSP0890-20130614|27729_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   17.0   0.7     0.0037   16.6   0.5    1.2  1  PF03066.10 Nucleoplasmin
  ------ inclusion threshold ------
      0.075   12.1   3.0      0.098   11.7   2.1    1.2  1  PF06524.7  NOA36 protein
       0.12   12.0   2.4       0.21   11.2   1.7    1.3  1  PF08595.6  RXT2-like, N-terminal
        4.1    5.8  11.0        6.2    5.2   7.6    1.2  1  PF10446.4  Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   1.1e-06    0.0037     117     139 ..     142     168 ..      75     177 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-06
                  .....----XXXXXXXXXXXXXXXXXX CS
   PF03066.10 117 e....eddeedeeeeddeedddeeeee 139
                        dd+e+ee++dd+ed+ +++ +
  MMETSP0890-20130614|27729_1 142 ShhhgMDDDEEEEDDDDDEDEYDDDPH 168
                  044444455555555555555555444 PP

>> PF06524.7  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.1   2.9e-05     0.098     271     301 ..     145     174 ..      91     186 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
    PF06524.7 271 yesdddeeesaedydeeededddddeeedet 301
                  ++ dddeee+++d+de ++ ddd ++ +d+ 
  MMETSP0890-20130614|27729_1 145 HGMDDDEEEEDDDDDE-DEYDDDPHHGHDHH 174
                  2234444444433333.33444444444443 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.7   6.1e-05      0.21      50      78 ..     142     168 ..      98     179 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.1e-05
    PF08595.6  50 kkepridedenelddededdeeeededee 78 
                  ++++ +d+de+e+dd+d++de+++d   +
  MMETSP0890-20130614|27729_1 142 SHHHGMDDDEEEEDDDDDEDEYDDD--PH 168
                  3444555555555544444443333..33 PP

>> PF10446.4  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.6    0.0018       6.2      54      79 ..     148     173 ..     137     189 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0018
    PF10446.4  54 dededdeeddddeDeddddddddeDd 79 
                  d+de++e+ddddeDe ddd    +D+
  MMETSP0890-20130614|27729_1 148 DDDEEEEDDDDDEDEYDDDPHHGHDH 173
                  33333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.83
# Mc/sec: 742.00
//
Query:       MMETSP0890-20130614|27751_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-08   31.6   0.0    7.5e-08   31.4   0.0    1.1  1  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   5.5e-12   7.5e-08      62     173 ..      18     129 ..      13     207 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 5.5e-12
   PF07690.11  62 rrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg....WravFlilailsllaavlvllll 173
                    ++ +gl++fa+ ++l+++a++    l+++ +  +l + +++p++++l++ ++++++ g alg +++  ++   +gpl+ + l+ ++        ++l +a+++++a+   l + 
  MMETSP0890-20130614|27751_1  18 LNTMRIGLVAFAAQCALIAVATGPR--LIFASISLSLLSNLVYPSVSSLVSNMVSESNIGEALGAINGVKAVTEGIGPLAFAGLMNYFEetklPGFPYLGCALVAFFALS--LTYD 129
                  569***********77777545544..***************************************************99999999999988755669999999999843..3544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 827.04
//
Query:       MMETSP0890-20130614|27752_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-16   58.2   0.1    7.9e-09   34.4   0.0    2.1  2  PF02386.11 Cation transport protein


Domain annotation for each model (and alignments):
>> PF02386.11  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.2e-09   4.4e-05     162     223 ..       3      64 ..       1     107 [. 0.80
   2 !   34.4   0.0   5.8e-13   7.9e-09     277     335 ..     216     282 ..     179     286 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.2e-09
   PF02386.11 162 rvlnaffqvvstrtaGfsvvdlsqlspaikvllmllMfiGgspgstaggiktvtfavilkal 223
                  r   a f +++ r+aG + +dl++l+ a+++l++l+M +   p  +a + +  t  +  ++ 
  MMETSP0890-20130614|27752_1   3 RFDVASFEAINCRHAGMTAIDLKSLHGATLLLMLLMMWLAPVPFVVALRSTSQTKPTTNRVS 64 
                  55677899*******************************99999999988877665555555 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 5.8e-13
   PF02386.11 277 dpf..fldilfevvSAfGtVGLSlGit.tknlslsp.....tlgklvlillmiiGRleilpvlllfa 335
                  ++   ++  lfe vSAfG+VGLSlG + ++n ++s        + +vl+l+ i  R + lp  ++ a
  MMETSP0890-20130614|27752_1 216 KNYdhIFHTLFELVSAFGNVGLSLGSIqKPNAAVSYshdlnAASLIVLCLVQIGARTRELPERVDSA 282
                  333469*******************986566666667877778889999999888888888766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.43s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 974.34
//
Query:       MMETSP0890-20130614|27761_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 560.44
//
Query:       MMETSP0890-20130614|27763_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.29   10.5   9.0        0.3   10.4   6.3    1.1  1  PF03066.10 Nucleoplasmin
        0.4   10.2   6.7       0.39   10.2   4.6    1.0  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
       0.81    9.8   4.0        0.9    9.6   2.8    1.2  1  PF11595.3  Protein of unknown function (DUF3245)
       0.89    9.2   4.7       0.84    9.3   3.2    1.1  1  PF08595.6  RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.3   8.9e-05       0.3     105     135 ..      27      57 ..      14      58 .] 0.50

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.9e-05
                  EE...........----XXXXXXXXXXXXXX CS
   PF03066.10 105 hlvaleedesldeeddeedeeeeddeeddde 135
                  ++val+   ++dee+d+++e  +dd++ddd+
  MMETSP0890-20130614|27763_1  27 EVVALQRRLDEDEEEDDDEEVHYDDDDDDDD 57 
                  4555555555444444443333444444443 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.6   0.00012      0.39     108     146 ..      23      57 ..       6      58 .] 0.58

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
    PF04889.7 108 akrkkkleeareidaddsdkseeesdesdddsdddddeD 146
                   k+k+  + +r +d+d++++++ee      d+d ddd+D
  MMETSP0890-20130614|27763_1  23 SKKKEVVALQRRLDEDEEEDDDEE---VHYDDD-DDDDD 57 
                  388888999999999996444422...222222.12222 PP

>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.8   0.00026       0.9      96     131 ..      23      58 .]      10      58 .] 0.71

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
    PF11595.3  96 eakkpvaaskrkaakvakeekekakevkddddddde 131
                  + kk+v a +r   + ++e ++++ + +ddddddd+
  MMETSP0890-20130614|27763_1  23 SKKKEVVALQRRLDEDEEEDDDEEVHYDDDDDDDDD 58 
                  556777788888888777777777766666666664 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.2   0.00025      0.84      49      80 ..      26      56 ..       7      58 .] 0.54

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00025
    PF08595.6 49 k...kkepridedenelddededdeeeededeeea 80
                 k     ++r+dede+e+dde+     ++d+d++++
  MMETSP0890-20130614|27763_1 26 KevvALQRRLDEDEEEDDDEEV----HYDDDDDDD 56
                 2234456666666666554433....222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       894  (0.0653891); expected 273.4 (0.02)
Passed bias filter:                      594  (0.0434465); expected 273.4 (0.02)
Passed Vit filter:                        97  (0.00709479); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 167.46
//
Query:       MMETSP0890-20130614|27778_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-28   99.8   0.1    2.5e-28   98.8   0.0    1.5  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   1.8e-32   2.5e-28       6     269 ..       8     305 ..       5     342 .. 0.81

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 1.8e-32
   PF03016.10   6 kVYvydlprrfnkdll.......kedaskeqswyetdqyslevilhkslkesrcltsdpdeAdlfyvpfyaslsvlrlngtnaekeerdllpreleeilesqpyWnrsgGrDHvlvnsrd....eggsallrlp.alnnntilvvvaegg......................................fsesqfrpgkD...vvlPalfhpnsvdreesaaaappakRktllffaGekrragksrsgairdklleeckassdvqceegneskqspenymellkssrFClvppGdtptsrrlfdallagCiPViisdq 269
                  kV++ydl    n+  l       +   + ++s +  +qy +   l++++++s+c + dp+ A++f+vp+++  +        ++k+ r++     +eile++p+ ++s+ r H+++ +++    +g++++  +  +l+ +  l++ +                                          ++++f    +   v++P++  +++ + + ++  +  +kR  l++f G+  +    ++++ r+++     +  d +++    ++ + +++++l+ +  FCl+p Gd+p ++++ da++ gCiPV++++ 
  MMETSP0890-20130614|27778_1   8 KVFMYDLR---NYSKLwdvsakiNVWGAGRHSVNHHEQYTAALMLFQRISNSKCQVFDPQNATIFFVPLFPEPK--------QSKQWRKACDVPEREILEALPHMRQSNARRHFVLIAKThracQGAWFYEPQDqRLRSMIRLAY-D--AplspipsarppllysyffreprtglldrchgggagnaqNRSNCFVSFPHvwsVPYPSSVRVREGKYNLAK-LDNTTKRSRLMLFVGNLDKG---EAESLRKRIDVMGRNYADPRLYY-RPPNVNADDFTKLMLETLFCLQPGGDSPGRKSISDAVALGCIPVFFGNA 305
                  89999999...6666678999884444678999999************************************99........777788888888899*******************99997777555555544434455555555.2..13356666777778888888888888888888777666655666665555888999999999998888887.99**************9999...55699999999999988888775.889999999*************************************873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:01.48
# Mc/sec: 634.71
//
Query:       MMETSP0890-20130614|27784_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:01.27
# Mc/sec: 875.52
//
Query:       MMETSP0890-20130614|27791_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:01.08
# Mc/sec: 625.72
//
Query:       MMETSP0890-20130614|27803_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   23.8   0.0    6.6e-05   22.3   0.0    1.8  1  PF01424.17 R3H domain


Domain annotation for each model (and alignments):
>> PF01424.17  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.8e-09   6.6e-05      22      55 .]     283     316 ..     281     316 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.8e-09
                  CHHHHHHHHHHHH---EEEEE---..-EEEEE-- CS
   PF01424.17  22 seeRkliHelaeefgleseSeGegpkRrvvitkk 55 
                  s +Rk  H +a+++gles S + gp+R+++++k+
  MMETSP0890-20130614|27803_1 283 SQDRKASHAIAQFYGLESISLEFGPNRHLRVSKT 316
                  568****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:01.13
# Mc/sec: 895.48
//
Query:       MMETSP0890-20130614|27807_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 900.45
//
Query:       MMETSP0890-20130614|27823_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.66
# Mc/sec: 1183.66
//
Query:       MMETSP0890-20130614|27824_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   20.1   8.6    0.00047   20.1   5.9    6.3  6  PF07974.8  EGF-like domain
     0.0054   16.1   0.6     0.0091   15.4   0.4    1.3  1  PF00558.14 Vpu protein
  ------ inclusion threshold ------
      0.011   15.5   4.9      0.011   15.5   3.4    5.1  6  PF00008.22 EGF-like domain
      0.064   13.5   0.0       0.12   12.7   0.0    1.4  1  PF13882.1  C-terminal domain of Fibronectin type III
       0.14   11.8   0.6       0.23   11.0   0.4    1.3  1  PF01102.13 Glycophorin A


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   5.9   1.7e-07   0.00047       7      32 .]      30      54 ..      25      54 .. 0.90
   2 ?    0.5   3.6      0.23   6.2e+02       8      24 ..      72      87 ..      66      89 .. 0.76
   3 ?    0.3   0.2      0.26   7.1e+02      26      32 .]     106     112 ..     103     112 .. 0.91
   4 !    6.3   9.8    0.0035       9.5       8      32 .]     141     164 ..     134     164 .. 0.91
   5 ?    1.9   3.1     0.081   2.2e+02      11      28 ..     224     242 ..     218     246 .. 0.81
   6 ?   -1.1   0.1      0.73     2e+03      22      29 ..     294     301 ..     294     302 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.7e-07
    PF07974.8  7 iCgghGtCvkqcgkCvCdsgyqGktC 32
                 +C+++GtC  +  +C C++g+ G +C
  MMETSP0890-20130614|27824_1 30 ECNNGGTCIAP-DVCTCKDGWDGFDC 54
                 6**********.36************ PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.23
    PF07974.8  8 CgghGtCvkqcgkCvCd 24
                 C ++G+C     +C C 
  MMETSP0890-20130614|27824_1 72 CENGGICGYK-DTCTCI 87
                 9999999854.459996 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.26
    PF07974.8  26 gyqGktC 32 
                  g++G +C
  MMETSP0890-20130614|27824_1 106 GWTGTDC 112
                  8****** PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0035
    PF07974.8   8 CgghGtCvkq.cgkCvCdsgyqGktC 32 
                  C ++G C  + +  C C  g++G +C
  MMETSP0890-20130614|27824_1 141 CANGGNCTAPdT--CTCAEGWTGYDC 164
                  **********66..***********9 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.081
    PF07974.8  11 hGtCvkq..cgkCvCdsgyq 28 
                  +G C  +  c +C C+++++
  MMETSP0890-20130614|27824_1 224 RGNCTAPneC-TCWCKNSFS 242
                  799**99876.788888775 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 0.73
    PF07974.8  22 vCdsgyqG 29 
                  +C +gy G
  MMETSP0890-20130614|27824_1 294 SCRRGYEG 301
                  5*****99 PP

>> PF00558.14  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   3.3e-06    0.0091       4      63 ..     326     385 ..     323     388 .] 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.3e-06
   PF00558.14   4 leliglialivaliiaivvWtivyreykkikkqkeierlikrireraedSgnESdGeeee 63 
                  +++   i+  v+ ii  v+  ++ r+ k++  q +ier+ +r +  +   g ES    ee
  MMETSP0890-20130614|27824_1 326 WTITLTICSSVLGIIILVMYVYIRRRMKQKYLQAKIERRRNRRSSEEGSGGRESKAAGEE 385
                  45556688999*******************************877777778999887777 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   3.4   4.1e-06     0.011       6      30 ..      31      51 ..      26      51 .. 0.96
   2 ?    8.1   2.4   0.00087       2.4       5      24 ..      71      86 ..      65      87 .. 0.94
   3 ?   -2.0   0.1       1.2   3.4e+03      12      22 ..     117     126 ..     116     130 .. 0.66
   4 ?   11.3   6.1   8.6e-05      0.23       6      30 ..     141     161 ..     132     162 .. 0.94
   5 ?   -3.3   1.5       3.1   8.4e+03      10      24 ..     225     235 ..     224     244 .. 0.63
   6 ?   -3.5   0.1       3.5   9.6e+03      24      30 ..     295     301 ..     294     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.1e-06
                 CSS--EEEEECCTEEEEE--TTCTT CS
   PF00008.22  6 CsngGtCvdtpgggytCeCpeGytG 30
                 C+ngGtC+  +     C+C+ G++G
  MMETSP0890-20130614|27824_1 31 CNNGGTCIAPD----VCTCKDGWDG 51
                 ***********....*********9 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00087
                 TCSS--EEEEECCTEEEEE- CS
   PF00008.22  5 pCsngGtCvdtpgggytCeC 24
                 +C ngG+C + +    tC+C
  MMETSP0890-20130614|27824_1 71 GCENGGICGYKD----TCTC 86
                 7***********....***9 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.2
                  EEEECCTEEEE CS
   PF00008.22  12 CvdtpgggytC 22 
                  Cv++   +++C
  MMETSP0890-20130614|27824_1 117 CVQGF-YDPFC 126
                  66665.66666 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 8.6e-05
                  CSS--EEEEECCTEEEEE--TTCTT CS
   PF00008.22   6 CsngGtCvdtpgggytCeCpeGytG 30 
                  C ngG C+  +    tC+C+eG+tG
  MMETSP0890-20130614|27824_1 141 CANGGNCTAPD----TCTCAEGWTG 161
                  ***********....*********9 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 3.1
                  -EEEEECCTEEEEE- CS
   PF00008.22  10 GtCvdtpgggytCeC 24 
                  G C+       +C+C
  MMETSP0890-20130614|27824_1 225 GNCTAPN----ECTC 235
                  6677664....4555 PP

  == domain 6    score: -3.5 bits;  conditional E-value: 3.5
                  --TTCTT CS
   PF00008.22  24 CpeGytG 30 
                  C  Gy G
  MMETSP0890-20130614|27824_1 295 CRRGYEG 301
                  9999987 PP

>> PF13882.1  C-terminal domain of Fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.2e-05      0.12       5      50 ..     324     370 ..     320     385 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.2e-05
    PF13882.1   5 egWFIgl.vsaiallllillivclikrsrggkysvkekedakldpee 50 
                  e+W I l +++ +l ++il++ ++i+r+ + ky   + e ++ ++ +
  MMETSP0890-20130614|27824_1 324 EIWTITLtICSSVLGIIILVMYVYIRRRMKQKYLQAKIERRRNRRSS 370
                  799999867888888999999************86666665555444 PP

>> PF01102.13  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   8.5e-05      0.23      64      94 ..     323     355 ..     318     366 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.5e-05
   PF01102.13  64 lvitliilgVmAGiigiillisYl.i.rRliKk 94 
                  l+i  i l++   ++gii+l+ Y+ i rR+ +k
  MMETSP0890-20130614|27824_1 323 LEIWTITLTICSSVLGIIILVMYVyIrRRMKQK 355
                  68999****************986442555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       739  (0.0540521); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.44s 00:00:01.15 Elapsed: 00:00:00.95
# Mc/sec: 978.72
//
Query:       MMETSP0890-20130614|27829_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.45s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 858.69
//
Query:       MMETSP0890-20130614|27839_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.48s 00:00:01.03 Elapsed: 00:00:00.95
# Mc/sec: 925.75
//
Query:       MMETSP0890-20130614|27850_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 653.55
//
Query:       MMETSP0890-20130614|27854_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.81
# Mc/sec: 366.85
//
Query:       MMETSP0890-20130614|27860_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 709.57
//
Query:       MMETSP0890-20130614|27872_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-17   62.2   0.0      9e-17   61.7   0.0    1.3  1  PF13578.1  Methyltransferase domain
    1.2e-07   30.8   0.0    2.6e-05   23.2   0.0    2.1  2  PF01596.12 O-methyltransferase
    0.00018   20.7   0.0    0.00042   19.5   0.0    1.6  2  PF04989.7  Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0     2e-20     9e-17       1     106 []      31     179 ..      31     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2e-20
    PF13578.1   1 vEiGvysGvstlvllqa.lkrngagrlysvdpdpg....................................aeeaaalaeeagladrvrllkgds...eealasla...dgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                  +E+G+++G s+ +l++  l +n ++rl+++d +                                       e++a++++++   ++   l+g+s   + al+sl+    g +D+++iDg+h+ ++vl d  +++++l+ gg++++dDy
  MMETSP0890-20130614|27872_1  31 LEVGSFEGSSATWLAANvLTKNPDSRLICLDAWNSsiyenscencsfslenykedpqinsviagslrddsaLERFARNLAKTPAGNHTLALRGPSsvsLVALSSLQrnlLGAFDFIYIDGDHSSSQVLTDAVLAFRLLRTGGIMAFDDY 179
                  7*************9872555666****************************99999999999999987775556666666677777666777774445566666688889*************************************8 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0013         6      36      77 ..      17      61 ..       5      71 .. 0.75
   2 !   23.2   0.0   5.7e-09   2.6e-05     109     155 ..     131     178 ..      91     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0013
   PF01596.12 36 fLsllvklvgakkvleiGvftGyslLatalal...PedGkiiaid 77
                 +L  l++l+ +   le+G f G s+   a ++     d ++i +d
  MMETSP0890-20130614|27872_1 17 ILPRLLSLSRPLLLLEVGSFEGSSATWLAANVltkNPDSRLICLD 61
                 56678999999999**********977665431224577777776 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.7e-09
   PF01596.12 109 vLeelvedkkqgefDlifvDaDkssYknyyekll..eLvkvGgliaiDn 155
                  +L +l  ++  g+fD+i++D D ss +   + +l  +L+++Gg++a+D+
  MMETSP0890-20130614|27872_1 131 ALSSLQ-RNLLGAFDFIYIDGDHSSSQVLTDAVLafRLLRTGGIMAFDD 178
                  334443.4447******************999774479*********96 PP

>> PF04989.7  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.2e-08   0.00042      18      70 ..      12      64 ..       8     111 .. 0.87
   2 ?   -2.0   0.0      0.36   1.7e+03     115     130 ..     146     161 ..     125     177 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 9.2e-08
    PF04989.7 18 pqdlvayqellwelkPdliiEtGiahGGSllflasllelleekgkVlgiDidi 70
                 ++d v + +ll+  +P l++E+G+++G S+ +la  +   + + + + +D   
  MMETSP0890-20130614|27872_1 12 VFDTVILPRLLSLSRPLLLLEVGSFEGSSATWLAANVLTKNPDSRLICLDAWN 64
                 7899*****************************99888888999999988754 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.36
    PF04989.7 115 vilDsdHthehvlaeL 130
                  +  D dH+  +vl   
  MMETSP0890-20130614|27872_1 146 IYIDGDHSSSQVLTDA 161
                  4567888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 747.95
//
Query:       MMETSP0890-20130614|27879_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-17   63.7   0.0    4.3e-08   32.9   0.0    2.2  2  PF00241.15 Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> PF00241.15  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   3.2e-12   4.3e-08      35     122 ..      13     104 ..       2     108 .. 0.79
   2 !   28.6   0.0     7e-11   9.6e-07      70     120 ..     205     259 ..     187     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 3.2e-12
                  E.E-S-HCCCCCCTS-..TTS-EEEEEEEEEEBSS-EEEEEEEEEE--TTS-HHHCHHHHHCCHHHHHHH--.....--EEEEES-GGGGSHHHH CS
   PF00241.15  35 vgetgdsydelveelk..erecrYavldveyteeeskkskivfvswcpdgApvkkkmlyASskdalkkslkg.....ikvevqatdasdlseeel 122
                  +g++++++d l+e+     +++ ++++  +  ++ ++    ++v+w+pd+A ++ kmly+Ss + lk++l+      +k +  a+++s+++ e+l
  MMETSP0890-20130614|27879_1  13 SGSVNEDFDRLREDAGltVDQPAFVLFCRD--DNVKGARSWMLVAWVPDTAAPRLKMLYSSSREDLKTALGVgyfggYK-DYCANSESEMTWENL 104
                  568899999999998876788888888776..568888999****************************9865655455.556667888887776 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 7e-11
                  EEEEEEEEE--TTS-HHHCHHHHHCCHHHHHHH--....--EEEEES-GGGGSHH CS
   PF00241.15  70 kskivfvswcpdgApvkkkmlyASskdalkkslkg....ikvevqatdasdlsee 120
                   s+++f+ +cpd A++k km y+  k+++   l +     + +++++da+dl+ +
  MMETSP0890-20130614|27879_1 205 ASQLIFIYFCPDEASLKHKMTYSTAKATFIDILRSrnfvPSKSIEVRDANDLDAD 259
                  5789****************************999888745699999****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.97
# Mc/sec: 748.55
//
Query:       MMETSP0890-20130614|27887_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   12.9   2.7      0.083   12.3   1.7    1.4  1  PF13036.1 Protein of unknown function (DUF3897)
        2.7    8.2   4.7        2.2    8.5   0.9    2.2  2  PF06156.8 Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF13036.1  Protein of unknown function (DUF3897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.7   1.2e-05     0.083      66     135 ..      78     149 ..      31     154 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.2e-05
    PF13036.1  66 lvdsvkNkTsehidtesltkkirraLlks.gkftf.vsgaqradarqelrlqkesslvsqstaaklgrqvgA 135
                   + +++N +s++++t+s + +  r+L+ +  +f+f  ++a+r+++r+e +     s v+  t+ + ++ + A
  MMETSP0890-20130614|27887_1  78 DLLPIQNTSSQQLNTSSTIIEKARSLAEEnDRFRFaLAKAERKALRAEKKADLYASVVKDTTISADNAVIEA 149
                  45579**********7766666667776659****8777777788888888888888888888887777766 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.8     0.064   4.4e+02      33      49 ..      43      59 ..       6      92 .. 0.48
   2 ?    8.5   0.9   0.00032       2.2      22      66 ..      84     128 ..      58     156 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.064
    PF06156.8 33 elleenaelkleneklr 49
                 ++  e a+++ + ++lr
  MMETSP0890-20130614|27887_1 43 RIAAETAHIRYKAAALR 59
                 12233333333333333 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00032
    PF06156.8  22 eeleelkkelkelleenaelkleneklrerleeleeeekkkekkk 66 
                  ++ ++  ++ ++++e+  +l  en+++r  l++ e+++ ++ekk+
  MMETSP0890-20130614|27887_1  84 NTSSQQLNTSSTIIEKARSLAEENDRFRFALAKAERKALRAEKKA 128
                  3334444567789999999*********99999988555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       842  (0.0615857); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.52
# Mc/sec: 783.42
//
Query:       MMETSP0890-20130614|27893_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-24   83.0   0.1    1.2e-16   60.0   0.0    2.0  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-08   0.00014      48      87 ..       3      42 ..       1      47 [. 0.92
   2 !   60.0   0.0   8.6e-21   1.2e-16       9      93 ..      55     142 ..      50     145 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1e-08
                 HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHH CS
   PF00153.22 48 ldalkkiykeeGirglyrGllpnllrvvpaaaikfvtyet 87
                 ldal++ +k  Gir+ly G+ ++l  +v++a ++f++ + 
  MMETSP0890-20130614|27893_1  3 LDALQQALKAGGIRELYAGFFATLALDVVTAIVQFTVIDL 42
                 7999********************************9875 PP

  == domain 2    score: 60.0 bits;  conditional E-value: 8.6e-21
                  HH----HHHCCHHHCHHHHHHHHHHH...-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   9 llaGaiAgaiaalvttPldvvKtrlq...ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  ++ G +A a+a+++  P+dvv+tr++   + ++ a+  y+g+++ +++ +++eG+++lyrGllp+l+  +   ai+ ++y + k+++ 
  MMETSP0890-20130614|27893_1  55 AALGFFASALATTASEPIDVVRTRIMsriRGRNDARFLYNGLFHGFSQALRTEGLTALYRGLLPRLVLKSFGGAIWYSSYVHSKSFFL 142
                  568***********************999889999999**********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 524.42
//
Query:       MMETSP0890-20130614|27899_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-07   28.8   0.0    1.4e-06   28.3   0.0    1.3  1  PF13460.1 NADH(P)-binding


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0     1e-10   1.4e-06      15     149 ..       1     142 [.       1     154 [. 0.74

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1e-10
    PF13460.1  15 vkellarghevtalvRnps...klpe...ssgvtivkkDlfdledlaealagvdvvvdafgarpe.......d....regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelleas..gldwtivrPaalfea 149
                  +k+l++rg+ +++++R+ +   +l+     +++++ ++D+f +    + l+++ +v++++g++p        +     e  + +l+a+k+a+v+r v++ a+    + p+ +++         l a++aa ++++++       ++ P+a+++ 
  MMETSP0890-20130614|27899_1   1 MKRLVERGVRAVSVSRSGQvpsQLTNeqwTQKAEWKEGDAFSP----NFLEDAAAVIVSVGSPPIpfveyrkQlranGETNESILRAAKEAKVSRAVLINATM-PAWIPRGYRD-------GKLLAEQAAFDFVRDRddPCAAAVLKPSAIYGT 142
                  689**************77322444477768999999999999....7999**********9988888776615556999*******************9987.4455553332.......455555566666642223667777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|27915_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00041   19.8   0.6     0.0045   16.4   0.4    2.3  1  PF05201.10 Glutamyl-tRNAGlu reductase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF05201.10  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   3.3e-07    0.0045      23     146 ..       8     164 ..       2     169 .. 0.59

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.3e-07
   PF05201.10  23 leealaql.keeegieevvilsTCnRtEiylasedaeaaveels.............................ellaefkqls....leeleeylyvlege.eavrhlfrVasGLd...SmvlGEpqIlgQvkrAyelakeagtlgkiLerlfqkafavakr 146
                  +++alaq+ ++ +g+ ev++  TC R  i ++se+ ++a +++                              +  ++ ++ls     +e++  l+v +g  ++v  + r+a++Ld    +      +++Q+k + + +k     +++L+ ++++a++++k+
  MMETSP0890-20130614|27915_1   8 AAKALAQCiSSYDGLGEVIVFATCARLAILCESETSKHAYDAVAktiaaqlvrwekspaswsysfdlaadqilKANNRRHELSisedDDETDLPLFVESGVwASVLYMARMAASLDdfdPQCSRRAHVIKQIKASSRSSK-----SSTLRIVIESALRCGKQ 164
                  5567777669999*****************97776666666655455666677777777777777666665543333334444332222344444444443134556666666666444455556666666665544443.....45566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 945.41
//
Query:       MMETSP0890-20130614|27914_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.025   14.4   0.0    1.7  1  PF00249.26 Myb-like DNA-binding domain
      0.064   13.2   6.6       0.16   11.9   4.6    1.8  1  PF03107.11 C1 domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.7e-06     0.025       3      47 ..     170     214 ..     168     215 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.7e-06
                  SS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHHH CS
   PF00249.26   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                   W+  +++ l+d ++++G g+W   a+ +g g t+ +c  +++k+
  MMETSP0890-20130614|27914_1 170 GWSVRDELVLLDSIERYGLGNWCDAAESVGCGHTARDCEQHYYKL 214
                  6*****************************99***********97 PP

>> PF03107.11  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.6   2.4e-05      0.16       2      29 ..     109     141 ..     108     142 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.4e-05
   PF03107.11   2 kCsvCerktdgfy....fYtC.kkccftlHvrC 29 
                   Cs+C+++++       ++ C + +c++l+++C
  MMETSP0890-20130614|27914_1 109 QCSACGKEMETKLslapVFVCtECDCIVLCLNC 141
                  7********************77777******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       786  (0.0574898); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.93
# Mc/sec: 1507.39
//
Query:       MMETSP0890-20130614|27925_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       643  (0.0470304); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.82
# Mc/sec: 1373.52
//
Query:       MMETSP0890-20130614|27935_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-30  103.5  19.2    8.7e-09   34.8   0.1    6.4  6  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.079   10.6   1.1       0.13    9.9   0.8    1.3  1  PF04762.7  IKI3 family


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.1e-06     0.035      17      38 ..       3      24 ..       1      25 [. 0.86
   2 !   34.8   0.1   1.3e-12   8.7e-09       2      38 ..      32      70 ..      31      71 .. 0.94
   3 !   10.9   0.1   4.3e-05       0.3       9      35 ..      87     116 ..      79     118 .. 0.88
   4 !   14.5   0.1   3.2e-06     0.022       9      38 ..     135     177 ..     129     178 .. 0.90
   5 !   27.3   0.3   2.8e-10   1.9e-06      10      38 ..     209     241 ..     201     242 .. 0.95
   6 !   12.1   0.2   1.8e-05      0.12      12      39 .]     260     287 ..     250     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.1e-06
                 EEEESSSTEEEEEETTSEEEEE CS
   PF00400.27 17 vafspdgpllasgSrDgtirlW 38
                 + ++   ++la++S+D+t++++
  MMETSP0890-20130614|27935_1  3 IQWDYYARRLATASSDRTVKIF 24
                 677777899************8 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 1.3e-12
                 EEEEEEESSSSSEEEEEEESS..STEEEEEETTSEEEEE CS
   PF00400.27  2 eckatlrgHtspVtcvafspd..gpllasgSrDgtirlW 38
                 e++atl+gH +pV+ va++++  g+++as+S+Dg + ++
  MMETSP0890-20130614|27935_1 32 ELIATLTGHDGPVWQVAWAHPcfGNIVASCSYDGQVLIY 70
                 6789*******************************9886 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 4.3e-05
                  SSSSSEEEEEEESS...STEEEEEETTSEE CS
   PF00400.27   9 gHtspVtcvafspd...gpllasgSrDgti 35 
                  g + +V+++ fsp      +la++S+Dg +
  MMETSP0890-20130614|27935_1  87 GKSCSVNSIQFSPYefgVLMLACASSDGYV 116
                  55679***********************88 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 3.2e-06
                  SSSSSEEEEEEESS.............STEEEEEETTSEEEEE CS
   PF00400.27   9 gHtspVtcvafspd.............gpllasgSrDgtirlW 38 
                  + + ++++v++sp                ++a+g +D+ +r W
  MMETSP0890-20130614|27935_1 135 ASQLGCNAVSWSPVgcigcriegdeheALRIATGTCDNAVRFW 177
                  556689************************************* PP

  == domain 5    score: 27.3 bits;  conditional E-value: 2.8e-10
                  SSSSEEEEEEESS....STEEEEEETTSEEEEE CS
   PF00400.27  10 HtspVtcvafspd....gpllasgSrDgtirlW 38 
                  H+ +V++va+sp      +l++s+S+D+ +++W
  MMETSP0890-20130614|27935_1 209 HKEWVRDVAWSPYtgvaTCLVVSCSEDKRVYIW 241
                  99******************************* PP

  == domain 6    score: 12.1 bits;  conditional E-value: 1.8e-05
                  SSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgSrDgtirlWd 39 
                  +pV+ v++s  g++la +S    + lW+
  MMETSP0890-20130614|27935_1 260 APVWKVSWSAAGNILAVSSGEDEVTLWK 287
                  89*****************999999996 PP

>> PF04762.7  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.8   1.9e-05      0.13     300     335 ..     256     292 ..     202     319 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.9e-05
    PF04762.7 300 ereeekvesLaWnsdSevLav.sledrvqlwttgNyh 335
                  ++ +++v +++W++ +++Lav s ed+v lw  +  h
  MMETSP0890-20130614|27935_1 256 STFNAPVWKVSWSAAGNILAVsSGEDEVTLWKESMTH 292
                  567788999************666999****987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 1223.22
//
Query:       MMETSP0890-20130614|27927_1  [L=1153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   24.6   0.0    3.5e-05   23.4   0.0    1.7  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
      0.015   15.3   0.0       0.04   14.0   0.0    1.8  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.1e-09   3.5e-05       1      84 [.     215     315 ..     215     316 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.1e-09
                  EEEEEEEESS--S-S.....................TSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSCSEE---E CS
   PF00168.25   1 LkvkvieAknLpnkd.....................kngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgkddflGea 84 
                  L+++v+ A++L +                       k + ++++vkv++ g    +kr+++i ++ nP + +++   +v ++ a +++ +++e  fg d ++ ++
  MMETSP0890-20130614|27927_1 215 LSIEVFAARHLDAAArghkngdrivstggrlrqglvKVSAPSTFVKVTVRG---RTKRSNTILRSANPSFGDHIAEFFVSDPSAVIHIAIYEELPFG-DALIAQF 315
                  7899999999999889999999*************9999************...557**************998777799*****************.9999875 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.8e-06      0.04       2      52 ..     791     835 ..     790     899 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.8e-06
                  SBEEEEEEEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE CS
   PF00169.24   2 ikeGyllkksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc 52 
                  +++G+l k++   + wk+++f L+ + L+y+ +++k   k    +++l+ +
  MMETSP0890-20130614|27927_1 791 VCSGFLEKRG---RGWKRYHFELKASILYYYLDKSK---KQSPNIVDLRRV 835
                  78999*9999...*********************95...444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.50u 0.39s 00:00:01.89 Elapsed: 00:00:01.36
# Mc/sec: 2031.62
//
Query:       MMETSP0890-20130614|27944_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   43.6   0.1    3.3e-11   43.2   0.1    1.1  1  PF01636.18 Phosphotransferase enzyme family
      3e-10   39.6   0.2    4.2e-10   39.1   0.1    1.2  1  PF02958.15 Ecdysteroid kinase
    1.1e-06   27.4   0.1    1.3e-06   27.1   0.1    1.1  1  PF07914.6  Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
      0.047   13.1   0.0      0.063   12.7   0.0    1.2  1  PF01633.15 Choline/ethanolamine kinase
      0.048   12.7   0.0      0.089   11.8   0.0    1.4  1  PF06875.6  Plethodontid receptivity factor PRF


Domain annotation for each model (and alignments):
>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   1.2e-14   3.3e-11     156     231 ..      25     100 ..       3     105 .. 0.77

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.2e-14
                  HHHHHHCSS--EEB-SS-SGGGEEEE.TTTTEEEE---TT-BBE-TCHHHHCCC.TCHTCHHHHHHHHHHCHCHCS.H CS
   PF01636.18 156 laallpgaeppvllHgDlhpgNllvd.pddgrvgviDfedaglgpplyDlasll.rrwreeldpellaallrayelea 231
                  l++ l +  p++l+HgD++p Nl ++   +++  v+D+++ +l+ p+yD+a+ l  +++ +++    ++l ray +e+
  MMETSP0890-20130614|27944_1  25 LLQDLAQ-PPHSLIHGDFRPSNLKFHsHLKQV-IVFDWQFISLASPAYDFAYYLgLALTVNQRRTMEEDLKRAYIDER 100
                  3333332.5679**************544555.5********************756899999999999999998555 PP

>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   1.5e-13   4.2e-10     205     282 ..      25      98 ..       5     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.5e-13
   PF02958.15 205 lveenesefnvLnHGDlwvnNimfkydeegepedvilvDFQlsrygspalDLlyflytsteeelrkekfdellrtYhe 282
                  l+++  ++ + L HGD+  +N+ f+      +++vi +D+Q++ ++spa D +y+l   ++ ++r+ ++++l r+Y +
  MMETSP0890-20130614|27944_1  25 LLQDLAQPPHSLIHGDFRPSNLKFHSH----LKQVIVFDWQFISLASPAYDFAYYLGLALTVNQRRTMEEDLKRAYID 98 
                  44455677788*************985....667******************************************86 PP

>> PF07914.6  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   4.9e-10   1.3e-06     267     334 ..      33      96 ..       7     116 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.9e-10
    PF07914.6 267 kkvlvhgDlwqaNiLfseeeegklklkkiiDyQlvslgnpaeDlvrlllscLsgedRrarkeelLeqy 334
                   + l+hgD   +N+ f+     +lk   + D+Q +sl +pa D +  l  +L+ + Rr+ +e+l   y
  MMETSP0890-20130614|27944_1  33 PHSLIHGDFRPSNLKFHS----HLKQVIVFDWQFISLASPAYDFAYYLGLALTVNQRRTMEEDLKRAY 96 
                  5679**********9988....67888899*****************************999987776 PP

>> PF01633.15  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05     0.063     132     185 ..      22      76 ..       6      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.3e-05
                  HHHHHTT----.EEEE-S------EEE-------EE---TT-EEEEHHHHHHHHH CS
   PF01633.15 132 leklleekesp.vvfCHnDlqegNillnkeekklvlIDFEYasynyrafDlAnhf 185
                  + +ll++  +p   + H D  ++N+ +++  k++++ D+ + s    a+D+A ++
  MMETSP0890-20130614|27944_1  22 YTNLLQDLAQPpHSLIHGDFRPSNLKFHSHLKQVIVFDWQFISLASPAYDFAYYL 76 
                  5667766666669999************************************987 PP

>> PF06875.6  Plethodontid receptivity factor PRF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.3e-05     0.089      44      92 ..     118     163 ..     102     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.3e-05
    PF06875.6  44 faediqssadsllptylsfqgaplsdpdyqlphikvvnlptaamdydtf 92 
                  f  diq     +l +  sf     s  +y l h  ++nl taa+d++++
  MMETSP0890-20130614|27944_1 118 FNHDIQVG---VLISLASFVIGAASAKNYTLHHRSITNLATAALDWNAL 163
                  56677654...466667888888899*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 757.42
//
Query:       MMETSP0890-20130614|27956_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:01.41
# Mc/sec: 365.40
//
Query:       MMETSP0890-20130614|27962_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-16   58.9   0.3    6.6e-16   57.7   0.1    1.7  1  PF01253.17 Translation initiation factor SUI1
  ------ inclusion threshold ------
      0.026   14.3   9.0      0.036   13.8   6.2    1.1  1  PF03153.8  Transcription factor IIA, alpha/beta subunit
        3.1    8.3  15.9        5.9    7.4  11.0    1.5  1  PF09538.5  Protein of unknown function (FYDLN_acid)
        5.4    6.6  12.8        1.1    8.9   0.4    2.3  2  PF08595.6  RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF01253.17  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1   1.9e-19   6.6e-16       8      81 ..     169     242 ..     160     244 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 1.9e-19
   PF01253.17   8 hirlekrrgrKtvTvvegleleeidlkkllkalkkkfacggtvvkdknk.gevielQGdqrdkvkefLeekgilp 81 
                   +++e+r+++KtvTvv+gle+++i+lk+ +k + +kfa++++v+++ +  g ++ +QGd+   + ++L+ +  +p
  MMETSP0890-20130614|27962_1 169 IVYTETRSRKKTVTVVDGLETFGIKLKDAAKIFGRKFASSSSVKDK-DTgGSEVVIQGDVIFDLPDLLQSEFKIP 242
                  46778**************************************555.445999***************9987666 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.2   1.1e-05     0.036     254     303 ..      32      99 ..       5     106 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-05
                  ......XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX...............------------------- CS
    PF03153.8 254 e.....iQvDGagddssdeseedeeadede.eekdkv...............ieeDlddseDDvseedeed 303
                  +     +Q  G+ ++ ++    ++++de++ ee+ +v               +e+D dd++DD+ eed+e 
  MMETSP0890-20130614|27962_1  32 QllramVQKYGPEPTPEE--LAEDDDDEEDvEEATQVagskdegvteikeelAEDD-DDDDDDLAEEDDEP 99 
                  133455999999999997..222222222233333336677777788888855555.55599999999885 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.0    0.0017       5.9      50     108 .]      40      98 ..       9      99 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
    PF09538.5  50 deeeeaaeekeeeeeeeeddvledddeeedldddledeadddvdldeddDdvleddddd 108
                  +   e ++e+ +e++++e+dv+e+++ + ++d+ + + +++ ++ d+ddDd l+++dd+
  MMETSP0890-20130614|27962_1  40 KYGPEPTPEELAEDDDDEEDVEEATQVAGSKDEGVTEIKEELAEDDDDDDDDLAEEDDE 98 
                  22332355666666666666666666666656666666777444444444445666665 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   0.00032       1.1      29      79 ..      21      69 ..       8      77 .. 0.66
   2 ?    1.7   4.4     0.053   1.8e+02      63      88 ..      79     104 ..      67     107 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00032
    PF08595.6 29 ekvveYnGserkvlsrkrkkkkkepridedenelddededdeeeededeee 79
                 +  ++Y+G+e ++l   ++  k  p+  ++e  +dd+de+d ee ++ + +
  MMETSP0890-20130614|27962_1 21 TLLTKYKGKEEQLLR--AMVQKYGPEPTPEELAEDDDDEEDVEEATQVAGS 69
                 55689*********9..4444456666677766665665665555554444 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.053
    PF08595.6  63 ddededdeeeededeeeaeenplkki 88 
                  ++  edd++++d+ +ee++e p+k i
  MMETSP0890-20130614|27962_1  79 EELAEDDDDDDDDLAEEDDEPPFKLI 104
                  33345666666677777788899876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       875  (0.0639994); expected 273.4 (0.02)
Passed bias filter:                      631  (0.0461527); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.48s 00:00:01.22 Elapsed: 00:00:01.43
# Mc/sec: 432.35
//
Query:       MMETSP0890-20130614|27974_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   33.4   0.3    5.6e-08   32.2   0.2    1.5  1  PF03121.10 Herpesviridae UL52/UL70 DNA primase


Domain annotation for each model (and alignments):
>> PF03121.10  Herpesviridae UL52/UL70 DNA primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.2   4.1e-12   5.6e-08       6      56 ..     275     322 ..     272     332 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.1e-12
   PF03121.10   6 glilvqlkrtrnfyClnigrehksnntvrvflivtlrrailyqkCFapk.Cg 56 
                  +++l  ++r + +yC   gr+hks++   ++++++ + + l+q+CF+   C 
  MMETSP0890-20130614|27974_1 275 ERYLHLVLR-NTRYCHARGRQHKSQK---TMITIDPSTGDLWQRCFDSAdCC 322
                  667777777.89***********999...8****************654353 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.88
# Mc/sec: 1249.92
//
Query:       MMETSP0890-20130614|27982_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.62
# Mc/sec: 401.97
//
Query:       MMETSP0890-20130614|27994_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 507.06
//
Query:       MMETSP0890-20130614|27990_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-13   49.0   0.0    1.6e-12   47.3   0.0    1.6  1  PF09353.5 Domain of unknown function (DUF1995)


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.2e-16   1.6e-12      14     193 ..      44     282 ..      35     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.2e-16
    PF09353.5  14 ealaaaLkagkrrllielefpgl....ik...........kllplalellqkLae.agrkllvvfpdageaalakrdlgdlgfkllslkdrkeselesaf....................................e.....dllilvapqpie.leevekv..aeaaadrpvvllNprLedaaavg.....igsearelrkrFlstfevvYylrpleysg.kgalfrcypepWqlfkedenggyk 193
                  +al +a +  ++ +l e+efp+l    +            ++   ++ ++++La+  g+ l ++fpd  e  la   ++  +++  +l+++++ +    +                                    +     +l+++v+p     le+   +  +e+ ++  ++  N+ +++++  g     i  +  +  +rF+s+fe+  yl++l+ +g  g +fr ype+Wq+  +d  gg +
  MMETSP0890-20130614|27990_1  44 KALGEAQR--NNVSLCEIEFPPLlgekNEfadvdnvqilnRNRDWSMLTASELANeYGEALWLAFPDRKELELATEAWPGRAYQKCTLTTIEDAAS---VlagkeqvaqpwgaqfsrffekqitqegailgarpetAsapppKLIFAVQPGDGGpLEDWLNLeqCELNDG-FLISCNGAFDKLR-GGyyppiIFPKLASCVDRFISRFETLLYLKSLNEKGrGGWIFRVYPEDWQVHLQDRAGGNT 282
                  45555555..88899******9977552277788889999999999999999*99566********************877766667766643333...23346678889999888888888888777666666550556669999999998767776554411777777.**********887.445679666677999*****************877699***************99755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      155  (0.011337); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 989.35
//
Query:       MMETSP0890-20130614|28007_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-11   42.1   0.0    3.8e-10   39.4   0.0    2.3  2  PF13877.1 Potential Monad-binding region of RPAP3


Domain annotation for each model (and alignments):
>> PF13877.1  Potential Monad-binding region of RPAP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   2.8e-14   3.8e-10       4      91 ..     109     186 ..     106     189 .. 0.94
   2 ?   -0.5   0.0     0.078   1.1e+03      51      77 ..     194     220 ..     192     223 .] 0.71

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 2.8e-14
    PF13877.1   4 pknayeFerawkelskskeeryeyLlnippdklpkifkssldpdlLsdilkalnehlktkdeelvleiLeeLskvkrFdlalmflsks 91 
                  pkn+ eFer+w+++    e+r++yL+    ++l k+ +++ld+ +L+++l ++ e +k     + + +L +Ls+ +rF+l+++f++++
  MMETSP0890-20130614|28007_1 109 PKNPLEFERDWRRV----EDRAAYLQRNGSKALGKLWHQELDATVLGEVLAVIVE-FK-----QPIPWLFALSQSNRFSLNAAFIDNE 186
                  9*************....9************************************.66.....58*******************9976 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.078
    PF13877.1  51 dilkalnehlktkdeelvleiLeeLsk 77 
                  +i+++ n++++++d++l  +i   L+k
  MMETSP0890-20130614|28007_1 194 SIIDSSNSSVSEEDQNLLQKIAPMLRK 220
                  578888899999999966666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.53s 00:00:00.88 Elapsed: 00:00:00.89
# Mc/sec: 600.44
//
Query:       MMETSP0890-20130614|28005_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-16   57.8   0.0    1.2e-15   57.5   0.0    1.2  1  PF01063.14 Aminotransferase class IV


Domain annotation for each model (and alignments):
>> PF01063.14  Aminotransferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   8.6e-20   1.2e-15       6     218 ..     149     377 ..     144     394 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 8.6e-20
   PF01063.14   6 HleRLrksakal....igldldieelkkilqellkkng...rlqqgrlrlvvsrgggdlggsgytksecg.....vkslalkqsapeslllakklrvssqpvsravplaglKtlnrldnvlaalraarragaddvllvdedgn..vtEgstsNvf.....ilkgge.lytPslesgiLpGitrqvllelake..lgieveersltlkdlqqadeafltnslrgilpvtsidgeiv 218
                  +  R++  ++++     + d+ i+ ++  +++  + ++   + ++ +lr+ ++++g +lg+s++++  ++     v+s+++ + +p + l + +  ++++       ++++K   ++ +      +ar +g+  vl++d +    + E s++N++      +++ + ++tP+   +iL++it + l+ela++    + ve r++ +++l ++de+  ++++  ++ ++s+  +  
  MMETSP0890-20130614|28005_1 149 NARRMQLGCERMmmpiVPEDMFIRGCQWAVAANFAYVPpyeSRGAMYLRPYIFGHGPQLGLSPAPSFHFCvlaipVSSYYAGGLQPIDALVVHDYDRAAPRG-----VGHVKAAGNYGSDIRVSVEARGEGYPTVLYLDAATKsyIEEFSVANFVgikyaTKDRKAvYVTPDTN-TILRSITNDLLMELATTpeFDMIVERRPIHIDELAEFDEVAGCGTAVVMTGIKSLTYKNQ 377
                  5678888999997666666666666777777777777788555666**********************999**********************999999999.....**************999999999*********999888**********8886433333336666665.5**************98544555******************************9976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.45s 00:00:01.13 Elapsed: 00:00:00.86
# Mc/sec: 1136.88
//
Query:       MMETSP0890-20130614|28032_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-33  113.3   0.0    1.2e-32  113.0   0.0    1.1  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   9.1e-37   1.2e-32      15     158 .]       4     176 ..       1     176 [. 0.95

  Alignments for each domain:
  == domain 1    score: 113.0 bits;  conditional E-value: 9.1e-37
                  TTBGGGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHH.HCCCCE...EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT.........................SS.CHHHHHHHHHHHHHHHHH.HCTTTSEEEEEE-TTHHHHH CS
   PF00300.17  15 egrlqgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaei.lleeld...ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp.........................egesladvyeRvapfleelie.akdkgenvlivsHggvlral 158
                  e++++gw+dvpL+ekG+++a + gk L++++l++d ++tS lkRaiqT++  l e  d   ipi + ++L+er++g++ gl+k+e+ +++++++ +++r+++++ pp                           esla +++Rv p++++ i  + ++g++vli +Hg++lral
  MMETSP0890-20130614|28032_1   4 ENKFTGWHDVPLSEKGHQEAIDGGKLLAKEGLKFDIAFTSVLKRAIQTLDHaLFEA-DhmwIPIVKAWQLNERHYGALTGLDKKETVAKHGKDQVQIWRRSYDIPPPpldessehfpgndpryklldkhclpFTESLAITAKRVVPYWQQNIVpHLKEGKTVLIAAHGNSLRAL 176
                  678*********************************************99977773.3366***********************************************************************889**************99999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.46s 00:00:01.03 Elapsed: 00:00:00.78
# Mc/sec: 743.49
//
Query:       MMETSP0890-20130614|28045_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-19   68.9   0.0    1.2e-18   67.5   0.0    1.6  2  PF10274.4 Parkin co-regulated protein


Domain annotation for each model (and alignments):
>> PF10274.4  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.15   2.1e+03      70     107 ..      83     120 ..      66     128 .. 0.73
   2 !   67.5   0.0   9.1e-23   1.2e-18       1     129 [.     142     271 ..     142     276 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.15
    PF10274.4  70 geekilpvlpklilplkeaLntrdeeviesaLkvlqkl 107
                  ++++i++ lpk il+ k+  ++++ + ++++  +++kl
  MMETSP0890-20130614|28045_1  83 KKSEITQKLPKGILGKKTRTEQSQVAQMKKSSAAVSKL 120
                  46778899999999988887777777777666666665 PP

  == domain 2    score: 67.5 bits;  conditional E-value: 9.1e-23
    PF10274.4   1 tsFravydrGdip..irvehgskkkkiqWkveiekLdydalLplffdGlretkhpyrflategikdllea..ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvl 129
                  t+F+a y++G i   +rv ++++   ++ + ++ +++ + +Lpl+f+Glre +hp ++la++g++ ll +  +++ ++ + l  li pl+ aL +++++v+ +a++ + +l    ++ g+aL  ++ ++L +l
  MMETSP0890-20130614|28045_1 142 TRFAAAYKSGAIQrwLRVDQNGSRPDVAFASPVATIPINVVLPLCFEGLRECTHPLCLLARRGAQRLLLEhpRASAEVPSFLSTLIPPLRLALASKNRHVTNAAITQVGNL---AKIAGPALLDHLDKILLPL 271
                  79**********84467777788888****************************************9988899999***********************************...99**********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 1005.04
//
Query:       MMETSP0890-20130614|28060_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-16   58.2   0.0    6.8e-16   58.1   0.0    1.0  1  PF00294.19 pfkB family carbohydrate kinase
    6.4e-05   22.1   0.0    8.2e-05   21.8   0.0    1.1  1  PF08543.7  Phosphomethylpyrimidine kinase
     0.0085   15.2   0.0      0.012   14.8   0.0    1.1  1  PF01256.12 Carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.5e-19   6.8e-16     161     283 ..      22     152 ..       3     153 .] 0.83

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 1.5e-19
                  EECCCCCT--..HHCHHHHCSEESEECCCHHHHHHHCCSSHHCHHHHHHHHHHHHH-T-.SEEEEB------EEEE...SS--EEE--.-SS--SB-T.T---TTT--HHHHHHT.....T--HHHHHHHHHH CS
   PF00294.19 161 dpnlrdplwsqaleklrellpladilkpNeeEaealtgekdndveevlaalhklkakga.ktvvvtlGkdGallve...kdgevhvppvpkvkvvDtt.GAGDafvagflaglla.....gksleealrlana 283
                  ++ ++ p  +  +++l ++lp+a++++pN  E+ea+++  +  + ++++ l   +a+ + +t+vvt+G +G l+++   + +++h++p ++    +tt GAGD+fv++ +a++++      + l +al+l+++
  MMETSP0890-20130614|28060_1  22 TTLWLEPTTPTKASRLCRFLPYASLATPNSVELEAMAQTLG-IQSDCIEQLAYTIATKTrTTLVVTRGHEGILVATpgnQIKTLHTTP-IPLSFPNTTlGAGDTFVGVTAAAWIRlfrmdSSRLVDALSLGMK 152
                  666777777778999*************************8.556666666555555556****************994445555555.6799999999********************99*********997 PP

>> PF08543.7  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.8e-08   8.2e-05     115     210 ..      39     131 ..      28     141 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.8e-08
                  HTGGG-SEEE-BHHHHHHHHT----SHHHHHH---HHHH----EEEEB----------..-EEE-----EE-------...-S-------HHHHHHHHH CS
    PF08543.7 115 eLlplatlvtPNlpEaeaLlgkkikteedmkeaakkllelgakavlikGghlegeeavvtdvlydgeevveleaerie...tknthGtGCtlssaiaae 210
                  ++lp a+l tPN  E+ea++++   + + +++ a +++  + ++ +++ gh    e     v   g+++++l+++ i+    ++t G+G+t+  + aa 
  MMETSP0890-20130614|28060_1  39 RFLPYASLATPNSVELEAMAQTLGIQSDCIEQLAYTIATKTRTTLVVTRGH----EGI--LVATPGNQIKTLHTTPIPlsfPNTTLGAGDTFVGVTAAA 131
                  589*****************9766688999*********888899999999....344..455577777777776665222478999999998888886 PP

>> PF01256.12  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.6e-06     0.012     121     194 ..      48     127 ..      43     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.6e-06
                  E--HHHHHHHTT--HHHCCSHHHHHHHHHHHHTTEEEEE----..EEEEE---EEEE---....-GGG------------ CS
   PF01256.12 121 TPhkkEfkrLlkaivkleddrlelarelaqklnavvllkgekd..vivspegevlinstg....ssalakGGsGDvLaGl 194
                  TP+ +E + +++ ++++ d   +la ++a k  ++ ++   ++  ++++p++++++++t     s   ++ G GD+  G+
  MMETSP0890-20130614|28060_1  48 TPNSVELEAMAQTLGIQSDCIEQLAYTIATKTRTTLVVTRGHEgiLVATPGNQIKTLHTTpiplSFPNTTLGAGDTFVGV 127
                  ***************888888899*******9999776655442356778999998887622223345677888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 523.78
//
Query:       MMETSP0890-20130614|28086_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.051   11.8   0.7      0.059   11.6   0.5    1.0  1  PF09786.4  Cytochrome B561, N terminal
      0.054   13.5   1.3        1.5    8.9   0.0    2.5  2  PF02656.10 Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> PF09786.4  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   8.7e-06     0.059     133     267 ..     123     259 ..      98     262 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.7e-06
    PF09786.4 133 sppavktklpansseplvqihsvledSks...rsksssakfsssstsqqskqltsskklaspsslslspsyssslsvvessgnrsklassp..walksssakkdittdekllekflkeedeevkkitesakknatpeeti 267
                  +++ + ++++ +++e        ++ S+s   +  s+sa+f++ss+++++    ss+k+ + ++ ++  sy+ + +  ++  ++ + + sp  +++++ s+++   + +  l ++lk++   v+ki++++++ +t ++ +
  MMETSP0890-20130614|28086_1 123 QRRMSPPDFHGTMDEIQTLTAARFQRSSSndtGAVSPSAIFQRSSSNGERV---SSPKTHGKVQRNEYFSYPIIGGGGDVALSATRTVRSPrrSQYRELSQHDSASAAADELRSLLKDVPSSVSKIANGEGSLSTRQPGD 259
                  555566666666666655555666666541115678999999999999887...4689999*9*********999999999999999999955689999999999999999********************999987755 PP

>> PF02656.10  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.013        92      15      60 ..      15      70 ..      14      74 .. 0.73
   2 ?    8.9   0.0   0.00022       1.5      10      38 ..      85     113 ..      82     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.013
   PF02656.10 15 Rtslalaavglallrlflldhssssas....rnaakilgllli......alailtl 60
                 R ++  a++++++   +l   ++  a+    ++++ +++lll+      +l+ +++
  MMETSP0890-20130614|28086_1 15 RSAITAAIFAILIGECWLGPCMTLLARdvepSTMGTHVALLLVcnqlaaGLGPWII 70
                 88999999999999999999887777788887777777777775555445555544 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00022
   PF02656.10  10 fLaWlRtslalaavglallrlflldhsss 38 
                  fLa l t+ ala++gl++l + + +  ss
  MMETSP0890-20130614|28086_1  85 FLAVLSTGSALATLGLLALAFSHRSDTSS 113
                  9********************98887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.46s 00:00:01.02 Elapsed: 00:00:00.99
# Mc/sec: 634.19
//
Query:       MMETSP0890-20130614|28107_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-14   52.3   0.0    1.1e-13   51.4   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.8e-07   30.4   0.0    6.3e-07   29.3   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
    4.3e-05   22.6   0.1     0.0064   15.5   0.0    2.7  3  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00081   19.3   0.0       0.16   11.9   0.0    2.6  1  PF13401.1  AAA domain
     0.0054   16.3   0.2      0.024   14.2   0.1    2.2  2  PF13245.1  Part of AAA domain
     0.0067   16.0   0.0      0.025   14.2   0.0    2.0  1  PF07728.9  AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.016   14.5   0.0       0.57    9.5   0.0    2.6  1  PF00158.21 Sigma-54 interaction domain
      0.019   14.9   0.3        4.2    7.4   0.0    2.4  2  PF14389.1  Leucine-zipper of ternary complex factor MIP1
      0.027   14.6   0.2       0.12   12.5   0.1    2.1  1  PF13238.1  AAA domain
      0.055   13.2   0.0       0.35   10.6   0.0    2.2  2  PF13671.1  AAA domain
      0.079   11.8   0.0       0.48    9.3   0.0    2.1  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
       0.12   11.2   0.0       0.23   10.2   0.0    1.4  1  PF09848.4  Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   9.5e-17   1.1e-13       2     130 ..     149     279 ..     148     281 .. 0.73

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 9.5e-17
                  EEE-------HHHHHHHHHHCT......HEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS..GGGS-HHHH.H.TTSCCEEE- CS
   PF00004.24   2 llyGppGtGKTllakavakelg......vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkkkeskvivigatnr..pdkldpall.r.gRfdrkiei 130
                  ++ G pGtGKTl+a+ + + l+       +++e++ ++l+  yvg+++ k+r+++++ak      +lfiDE+++la++   g+ ++++ ++v+++++ l   +      +vi+a++   ++++ +    + +Rf++++ +
  MMETSP0890-20130614|28107_1 149 IFRGSPGTGKTLCARLLSRLLKelgyvhGDIVEVQRADLVAGYVGQTALKTRAVINRAK----GGVLFIDEAYSLAPRGaGGAGRDFGAEAVQEIMRDLTSGDP-----VVILAGYPreMEHFLRVNPgLsRRFQVRFAF 279
                  678**************9998544455588**************************985....37**************6666777777777666655555444.....4444444323444433333333677777766 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.5e-10   6.3e-07       5      99 ..     147     240 ..     144     246 .. 0.96

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 5.5e-10
                  -EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----..------------HHHH CS
    PF07724.9   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrdL 99 
                   +++ g+ g+Gkt+ a+ l++ll+   e   +  d  e++ ++ v+ +v +   +  + +++++gG++++DE    +p+  + +g+d   e Vq+++
  MMETSP0890-20130614|28107_1 147 HFIFRGSPGTGKTLCARLLSRLLK---ELGYVHGDIVEVQRADLVAGYVGQTALKTRAVINRAKGGVLFIDEAYSLAPRgaGGAGRDFGAEAVQEIM 240
                  5899*******************9...89***************************************************99************997 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.6e-06    0.0064      24      65 ..     147     190 ..     136     201 .. 0.78
   2 !    5.2   0.0    0.0078       8.9      89     117 ..     190     218 ..     181     224 .. 0.80
   3 ?   -2.5   0.0       1.9   2.1e+03      28      51 ..     222     245 ..     216     248 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.6e-06
   PF01078.16  24 nlllvGppGsGKtmlakrlpsllppls..eeealevakiasvag 65 
                  ++++ G+pG+GKt+ a+ l+ ll +l   + +++ev++   vag
  MMETSP0890-20130614|28107_1 147 HFIFRGSPGTGKTLCARLLSRLLKELGyvHGDIVEVQRADLVAG 190
                  789********************998622567788887777766 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0078
   PF01078.16  89 alvGggskpkpGeislahnGvLfLDElpe 117
                  + vG  +  +   i +a+ GvLf+DE+  
  MMETSP0890-20130614|28107_1 190 GYVGQTALKTRAVINRAKGGVLFIDEAYS 218
                  55677777778889************865 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.9
   PF01078.16  28 vGppGsGKtmlakrlpsllpplse 51 
                   G+ G+G+   a+++++++ +l++
  MMETSP0890-20130614|28107_1 222 RGAGGAGRDFGAEAVQEIMRDLTS 245
                  6999**************999886 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00014      0.16       4      30 ..     145     171 ..     141     263 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
    PF13401.1   4 agilvvtGesGvGKTtllrrlarqlde 30 
                  a + ++ G +G+GKT+++r l r l+e
  MMETSP0890-20130614|28107_1 145 APHFIFRGSPGTGKTLCARLLSRLLKE 171
                  567788899999999999998887753 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.1e-05     0.024      10      37 ..     145     171 ..     138     212 .. 0.79
   2 ?   -3.0   0.0       5.1   5.8e+03       7      18 ..     243     255 ..     234     256 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-05
    PF13245.1  10 npllvvtGgPGtGKTttlaaiiaallaa 37 
                  +p ++ +G PGtGKT + a++ ++ll +
  MMETSP0890-20130614|28107_1 145 APHFIFRGSPGTGKT-LCARLLSRLLKE 171
                  5567779********.*****9999932 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.1
    PF13245.1   7 la.gnpllvvtGg 18 
                  l+ g+p++++ G 
  MMETSP0890-20130614|28107_1 243 LTsGDPVVILAGY 255
                  3358899998775 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.2e-05     0.025       1      74 [.     147     216 ..     147     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.2e-05
                  EEEEE------HHHHHHHGGGGBS--EEEEE--.TT--HHHH---B--.........--------G-SEEEEESG CS
    PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqlt.rdtteedlkgrreiangttslvdsplvraaregeilvlDEv 74 
                  +++  G pGtgK+  a++l+++l+  + yv +     +++dl+ ++    g+t+l+  ++ + a +g +l++DE 
  MMETSP0890-20130614|28107_1 147 HFIFRGSPGTGKTLCARLLSRLLKE-LGYVHGDiVEVQRADLVAGYV---GQTALKTRAVINRA-KGGVLFIDEA 216
                  67899*****************943.333333314588899999998...78888888888444.6778888885 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0005      0.57      24     107 ..     147     221 ..     123     225 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0005
                  -EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS-HHHHHHHH------------S.-----TTTG----EEEET-----H CS
   PF00158.21  24 tvlitGesGtGKellAraiheaskrkkkpfvavncaaipeeLleseLFGhekGaFtGAek.ekkGlfekadgGtLfLDeigelpl 107
                  + + +G  GtGK+l+Ar++ +  k+    +v+ ++ ++++  l +   G     + G ++ + + ++++a+gG+Lf+De  +l +
  MMETSP0890-20130614|28107_1 147 HFIFRGSPGTGKTLCARLLSRLLKE--LGYVHGDIVEVQRADLVA---G-----YVGQTAlKTRAVINRAKGGVLFIDEAYSLAP 221
                  5567899999999999999887663..335555555554433333...2.....3333330334789999999999999877765 PP

>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1      0.02        22      13      35 ..     101     123 ..      97     140 .. 0.86
   2 ?    7.4   0.0    0.0037       4.2      52      79 ..     464     491 ..     454     494 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.02
    PF14389.1  13 LeqeVkkLqkqLqdeekvreaLe 35 
                  L++e+  L++ L  e++ r++L 
  MMETSP0890-20130614|28107_1 101 LKEEIRALRRSLVVEQQRRRILL 123
                  9*******************996 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0037
    PF14389.1  52 lpkkakellkeiavlEaevskLEqqlls 79 
                  +  + + ll  ++ lE++vs+LE+ ++s
  MMETSP0890-20130614|28107_1 464 ALASLNTLLPRVSALESTVSRLEKSASS 491
                  5667789999*************99876 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1    0.0001      0.12       4      30 ..     151     180 ..     148     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0001
    PF13238.1   4 tGtpGvGKtTlakeLaerl...gdvlrdla 30 
                   G pG+GKt  a++L++ l   g+v+ d++
  MMETSP0890-20130614|28107_1 151 RGSPGTGKTLCARLLSRLLkelGYVHGDIV 180
                  599************999899999998886 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00031      0.35       3      27 ..     149     176 ..     148     207 .. 0.82
   2 ?   -0.6   0.0      0.87   9.9e+02      23      74 ..     297     350 ..     237     359 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00031
    PF13671.1   3 llvGlpGsGKstlaerl...lkklgyvr 27 
                  ++ G pG+GK+  a+ l   lk+lgyv+
  MMETSP0890-20130614|28107_1 149 IFRGSPGTGKTLCARLLsrlLKELGYVH 176
                  899********98765433399999998 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.87
    PF13671.1  23 lgyvrlsqdtlrkrlfg..tdqqsktdytrvlkrlyqilnklarkalsagrsvi 74 
                  ++++rls d+  +++++  + + + +   +++  l + l+k+a++al+++ +v+
  MMETSP0890-20130614|28107_1 297 RHGYRLSRDASPTAIKNliDSHFDARLCVKWNGGLPEGLFKRAKDALARRLNVL 350
                  445666666666666554333333333445555566677777777777776665 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00042      0.48      51     113 ..     146     219 ..     137     223 .. 0.64
   2 ?   -0.7   0.0      0.47   5.4e+02     166     203 ..     269     306 ..     263     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00042
    PF05496.7  51 dhvllyGpPGlGkttlakiiakelgvelkvtsgPvle.kagdlaa...........lltnleekdvlfideihrl 113
                   h ++ G PG Gkt  a+++++ l+ el    g ++e + +dl+a            + n +++ vlfide + l
  MMETSP0890-20130614|28107_1 146 PHFIFRGSPGTGKTLCARLLSRLLK-ELGYVHGDIVEvQRADLVAgyvgqtalktrAVINRAKGGVLFIDEAYSL 219
                  599***************9997665.6666677776634456655222222111111233456678888887766 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.47
    PF05496.7 166 lrdrfgivarlefyeveelkeivkrsakileveieeeg 203
                  l  rf +   +  y++e+l++i  + a   + ++++++
  MMETSP0890-20130614|28107_1 269 LSRRFQVRFAFPDYSTEQLAAIFVKIAARHGYRLSRDA 306
                  7889999999999*********9988877776666665 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0002      0.23       4     116 ..     148     241 ..     146     254 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
    PF09848.4   4 ilvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrlltkkdq.kekksgenqlkellk 116
                  ++ +G +GtGKt++a  l   l        +++ ++ ++ v+v r +l   +     ++++ k +++in+++          v+++DEA  l  ++   + +  g++ ++e+++
  MMETSP0890-20130614|28107_1 148 FIFRGSPGTGKTLCARLLSRLL--------KELGYVHGDIVEVQRADLVAGY----VGQTALKTRAVINRAK--------GGVLFIDEAYSLAPRGAGgAGRDFGAEAVQEIMR 241
                  5679*********986555544........6677777777777777777777....7777788888888777........7777888887777644332333335566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       627  (0.0458602); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:00.97
# Mc/sec: 1306.88
//
Query:       MMETSP0890-20130614|28127_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        67  (0.00490053); expected 273.4 (0.02)
Passed bias filter:                       67  (0.00490053); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.97
# Mc/sec: 81.53
//
Query:       MMETSP0890-20130614|28135_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.24   10.7   3.9       0.26   10.6   2.7    1.2  1  PF03066.10 Nucleoplasmin


Domain annotation for each model (and alignments):
>> PF03066.10  Nucleoplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.7   1.9e-05      0.26     117     141 ..      38      67 ..       6      73 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.9e-05
                  ......----XXXXXXXXXXXXXXXXXXXX CS
   PF03066.10 117 e.....eddeedeeeeddeedddeeeeeee 141
                         d+e ++e+++++ed +eee +++
  MMETSP0890-20130614|28135_1  38 RlaelaADEEAQYEDYKEDEDKEEEEVDDK 67 
                  044443444555555555555554444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1122  (0.0820655); expected 273.4 (0.02)
Passed bias filter:                      727  (0.0531744); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.95
# Mc/sec: 189.19
//
Query:       MMETSP0890-20130614|28184_1  [L=874]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-12   45.2   0.3    2.1e-11   43.5   0.0    2.1  2  PF03399.11 SAC3/GANP/Nin1/mts3/eIF-3 p25 family
  ------ inclusion threshold ------
        7.6    5.4  21.8         11    4.8  15.1    1.2  1  PF01690.12 Potato leaf roll virus readthrough protein


Domain annotation for each model (and alignments):
>> PF03399.11  SAC3/GANP/Nin1/mts3/eIF-3 p25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   3.1e-15   2.1e-11      98     202 ..       2     110 ..       1     112 [. 0.92
   2 ?   -3.1   0.0      0.62   4.2e+03      31      52 ..     810     831 ..     804     841 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 3.1e-15
   PF03399.11  98 eaefvayiLLyalvadpspdfnlelell....paelrtdpliqhalqleaaleegnyarffklleskdvpylmacllei.fenaiRkealkaiskayrs..siplkflaelL 202
                  e ef+ay++L+ + +++ +  +  l +l    p  l   p++ +a +l++  +egnyarf k++  +++py+++cl++  +++ iR  a  ++ kay +   +p++f+++ L
  MMETSP0890-20130614|28184_1   2 EPEFTAYWILFFADHEQGSAASGLLTRLalerP-RLHAAPAVVRAAELRSSRAEGNYARFIKIA--RSAPYTVRCLIKAlLLDDIRAHAYAVLAKAYPKseALPVEFVQRRL 110
                  78***********99988888888888899854.4999**************************..99**********659****************999999999999887 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.62
   PF03399.11  31 yayvwdqlrsirqDltvQhikd 52 
                   + + +++r+ r Dl++ + +d
  MMETSP0890-20130614|28184_1 810 RSLLIERCRQLRDDLKAKQTED 831
                  56778999999***99966655 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  15.1    0.0017        11     237     434 ..     211     365 ..     185     413 .. 0.47

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0017
   PF01690.12 237 easrssnkvrktpreghllvnsateevlepeeeessseretsktpsaeesesdaekgllslekedekeevskesesdaeeed.eeltralaekeaaaeevkdaaeevlqskeepseklvesdkpeltpgaskeaevaatvlaaesvkedrdplekrek.sdkapskvlkarkekg.vssllsssLeggklkkkaesseekl 434
                  e++r+++++ k+++e+ l                                         + ++++e+ee+++ ++++ + +  + + ++++  e+++ ++k+a+e+ + ++++ ++++ ++ ++e++++a ke + a++ ++a   +  r + e++ + ++k+ +k++   ++k+  ++  ++ L  + ++++ +    + 
  MMETSP0890-20130614|28184_1 211 EEQRKQAETAKKAQEDAL-----------------------------------------R-RRQQEEEEIRRRQQEEEARRLaQLELERKKAAEEEERRIKAAEEARQLAEARRQAEVARRAREEYERTAKKELDEARARQRAREAEARRIAEEAQAAkREKERKKIEAILQKKAeEKRQREEELAREVRNQQLA----EK 365
                  233333333333333333.........................................3.33333334433333333333303333344444555555555555555555556666666666666666666666555555555554444444443333444444444444444422233333333333333322....11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1810  (0.132387); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                       129  (0.00943534); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.25u 0.47s 00:00:02.72 Elapsed: 00:00:02.12
# Mc/sec: 987.93
//
Query:       MMETSP0890-20130614|28195_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-09   35.7  43.7    0.00027   20.9   3.4    5.6  5  PF07974.8  EGF-like domain
     0.0032   17.2  31.3     0.0042   16.8   3.4    3.5  4  PF00053.19 Laminin EGF-like (Domains III and V)
  ------ inclusion threshold ------
      0.068   13.3  12.8       0.25   11.5   0.6    2.5  2  PF00954.15 S-locus glycoprotein family


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   3.4   5.9e-08   0.00027       6      32 .]      36      62 ..      29      62 .. 0.91
   2 !    8.2   1.5   0.00055       2.5       5      15 ..      72      84 ..      67      87 .. 0.74
   3 ?    3.9   0.2     0.012        56      21      27 ..     126     132 ..     121     133 .. 0.90
   4 ?    2.3   0.0     0.037   1.7e+02      25      32 .]     144     151 ..     140     151 .. 0.86
   5 !   17.0   8.5   9.6e-07    0.0044       6      32 .]     194     220 ..     189     220 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.9e-08
    PF07974.8  6 liCgghGtCvkqcgkCvCdsgyqGktC 32
                 ++C++ G C +++gkC+C +g+ G  C
  MMETSP0890-20130614|28195_1 36 AECSNAGLCKRTTGKCSCFAGFEGSAC 62
                 46************************9 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00055
    PF07974.8  5 g..liCgghGtCv 15
                     +C+ghG+C 
  MMETSP0890-20130614|28195_1 72 AdtGVCSGHGSCA 84
                 24468*******8 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.012
    PF07974.8  21 CvCdsgy 27 
                  CvCds++
  MMETSP0890-20130614|28195_1 126 CVCDSSW 132
                  ******9 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.037
    PF07974.8  25 sgyqGktC 32 
                  s ++G++C
  MMETSP0890-20130614|28195_1 144 SEWFGPDC 151
                  56****** PP

  == domain 5    score: 17.0 bits;  conditional E-value: 9.6e-07
    PF07974.8   6 liCgghGtCvkqcgkCvCdsgyqGktC 32 
                   +C+++G+C+ ++g+C C +g+ G+ C
  MMETSP0890-20130614|28195_1 194 IDCSNRGICDYETGICNCFNGFGGPAC 220
                  36********88**************9 PP

>> PF00053.19  Laminin EGF-like (Domains III and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   6.7   2.1e-05     0.098       3      33 ..      38      64 ..      36      77 .. 0.86
   2 ?   -1.1   0.5      0.36   1.7e+03       3      20 ..      67      83 ..      65      87 .. 0.71
   3 ?   -4.0   0.3         3   1.4e+04       1       4 [.     126     129 ..     125     131 .. 0.52
   4 !   16.8   3.4   9.2e-07    0.0042       3      33 ..     192     222 ..     190     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
                 STT-B-CC--B-S----BSBSTTEE---S-E CS
   PF00053.19  3 CnphgsssssCdsstgqClCkenveGrkCdr 33
                 C+++g     C+++tg+C+C  ++eG+ C+r
  MMETSP0890-20130614|28195_1 38 CSNAG----LCKRTTGKCSCFAGFEGSACER 64
                 66666....8*******************97 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.36
                 STT-B-CC--B-S----B CS
   PF00053.19  3 CnphgsssssCdsstgqC 20
                 C+++ + ++ C   +g C
  MMETSP0890-20130614|28195_1 67 CPGNKADTGVCSG-HGSC 83
                 7777777777866.5666 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 3
                  S-ST CS
   PF00053.19   1 CeCn 4  
                  C C+
  MMETSP0890-20130614|28195_1 126 CVCD 129
                  4444 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 9.2e-07
                  STT-B-CC--B-S----BSBSTTEE---S-E CS
   PF00053.19   3 CnphgsssssCdsstgqClCkenveGrkCdr 33 
                  C+   s+++ Cd +tg C+C +++ G+ C++
  MMETSP0890-20130614|28195_1 192 CHIDCSNRGICDYETGICNCFNGFGGPACNK 222
                  777788888********************97 PP

>> PF00954.15  S-locus glycoprotein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   5.5e-05      0.25      84     107 ..      36      58 ..      19      61 .. 0.85
   2 ?    6.0   3.6    0.0028        13      84     106 ..     194     215 ..     183     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.5e-05
   PF00954.15  84 kvCGpyglCdsstspkCkClkGFk 107
                  ++C + glC++ t+ kC+C+ GF+
  MMETSP0890-20130614|28195_1  36 AECSNAGLCKR-TTGKCSCFAGFE 58 
                  68*******87.5679*******8 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0028
   PF00954.15  84 kvCGpyglCdsstspkCkClkGF 106
                    C + g+Cd +t  +C+C++GF
  MMETSP0890-20130614|28195_1 194 IDCSNRGICDYET-GICNCFNGF 215
                  579******9876.69******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      120  (0.00877706); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.59
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|28191_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-46  157.3   0.0    5.9e-46  156.6   0.0    1.3  1  PF00069.20 Protein kinase domain
    9.4e-21   73.9   0.0    1.5e-20   73.3   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    3.8e-10   39.4   0.0    1.1e-09   37.9   0.0    1.7  1  PF04564.10 U-box domain
    6.3e-07   28.6   0.2    1.7e-06   27.3   0.1    1.7  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   1.7e-49   5.9e-46      44     260 .]       8     234 ..       2     234 .. 0.89

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 1.7e-49
                  HHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.CEESS-CSS----GGGS-HHHHH........TSHHHHHHHHHHHHHHHHHHHHC---TTTST..HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--.HHHHHTSGGH CS
   PF00069.20  44 tavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.eksseklttlvgtreYmAPEvll........kakeytkkvDvWslGvilyelltgklpfsge..seedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.aeeilkhpwl 260
                  +   E++ l++l Hp+i++l  +f++ +++yl l+ +eggdl  +l+++g+ls +e+  +a +i+ +le++Hs + ++rDLKp+NiL+d +g++ + DFGlak+l  ++++k++t++gt+ YmAPE  l        k  +y+++vD++slG++l + ltgk  + +e  +++d   + e+ +k+++ ++ +++++  +e+ dl ++l++   ++Rl+   e+ +hp++
  MMETSP0890-20130614|28191_1   8 RVCAEARALRNLYHPFIIRLRFAFQDVNNVYLGLDAMEGGDLRIALERHGSLSVNECALYAAEIVLALEHIHSSNYVFRDLKPSNILVDARGHIALGDFGLAKNLqLCPNHKARTFCGTPPYMAPEHFLsldkeplsKYGGYGTEVDWYSLGIVLTQCLTGKDKLLDEvfDTQDYDGMAESFRKGSYLKPLSQDTP--AEAADLRNRLCCVAVSARLKgGPELHRHPFF 234
                  3445****************************************************************************************************99*********************55566666669**********************995555554555566666677777777777776655..9******************977899999987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   4.3e-24   1.5e-20      46     209 ..       7     176 ..       2     215 .. 0.87

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 4.3e-24
                  HHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.........EEHHHHHHH---HHHHHHTTT-GTTTTS CS
   PF07714.12  46 eefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.........ftsksDvWsfGvllwEiftlgespypgl 209
                  ++++ ea+++++l hp i++l  ++ + +++++ ++ ++gGdL+  L+++   +l++++   +a++i  ++e+++s ++v rdL   N+L++ + ++ ++DfGLa++++   + k+++ +     +mapE + +           + ++ D +s G++l   +t  ++   ++
  MMETSP0890-20130614|28191_1   7 KRVCAEARALRNLYHPFIIRLRFAFQDVNNVYLGLDAMEGGDLRIALERH--GSLSVNECALYAAEIVLALEHIHSSNYVFRDLKPSNILVDARGHIALGDFGLAKNLQLCPNHKARTFCG-TPPYMAPEHFLSLDkeplskyggYGTEVDWYSLGIVLTQCLTGKDKLLDEV 176
                  67889********************************************9..9*******************************************************6666666555555.558*****9887777899999*****************9999877766665 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.2e-13   1.1e-09       5      61 ..     496     552 ..     493     555 .. 0.96

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 3.2e-13
                  GB-TTT-SB-SSEEE-TTT-EEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHH CS
   PF04564.10   5 fldpitlelmkdPvilPsgitvDrstiekhllsrdktdPftreplteeelipnlelK 61 
                  + +pit  ++ dPvi  +++t++r+++ +h+++ ++ +P t +p++++ + +nl+++
  MMETSP0890-20130614|28191_1 496 LTCPITCDVFVDPVICQDSHTYERAALLQHIREYGPYSPCTGKPIDQNVIFSNLAIR 552
                  68****************************************************997 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   4.9e-10   1.7e-06       9      45 ..     493     528 ..     487     542 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.9e-10
                  XXX-B-TTT-SB-SSEEEES----EEEHHHHHHHHTT CS
    PF11789.3   9 rislkCpltlkpfkePvtskkCnHvFEkeaIlkmlkr 45 
                  + +l+Cp+t+++f +Pv+ +   H++E+ a+l+++++
  MMETSP0890-20130614|28191_1 493 ASPLTCPITCDVFVDPVICQD-SHTYERAALLQHIRE 528
                  5689*************9655.8************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:01.02
# Mc/sec: 1435.46
//
Query:       MMETSP0890-20130614|28209_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-41  141.2   3.7    4.1e-41  140.6   2.6    1.3  1  PF02096.15 60Kd inner membrane protein
  ------ inclusion threshold ------
      0.093   12.8   0.4        1.8    8.7   0.1    2.6  3  PF07342.6  Protein of unknown function (DUF1474)
        6.9    6.3   9.3       0.27   10.9   0.3    2.8  3  PF02520.12 Domain of unknown function DUF148


Domain annotation for each model (and alignments):
>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   2.6   9.1e-45   4.1e-41       3     194 ..     134     332 ..     133     334 .. 0.89

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 9.1e-45
   PF02096.15   3 yglaIillTilvrllllpLtikqiksmrkmqelqpeikeiqeky....kedkqk...lqqemmklykeegvnplsgclplLiqlPilfalyrvlrnlae.lrsleeasflwiedLsapdalipllilpilagltlflsqklssk.s.qkskdkqaaaqqkimnyimplmflfiflsfPaglllYwvvsnlfqilqqlllnke 194
                  +++aI  +T+++r++llp++i  +k++++mq+ +pei+ +q+++    ++d++k   +q +m ++ ++++v+p+  +l  L qlPi+ ++++ l++l + ++ ++++++lw++dL+++d   p++ilpi++  ++fl+++++s+ + +++ ++ +a + + ++++m + +++++++fP  ++ Yw++ n f+++q+ llnk 
  MMETSP0890-20130614|28209_1 134 FWMAIAGTTFAIRTALLPISILTMKHAARMQKAKPEIDVLQNRMkqdqSDDPNKlamYQSQMAAVLEKHKVKPFLIFLFPLCQLPIFTSMFFGLQRLGThYPDATNGGMLWFTDLTVAD---PYYILPIATSSIFFLMVEYGSDgMsATQGNAGTAVNFRNVMRVMAIAMIPLTAHFPTSVFTYWFTANCFSVAQTQLLNKN 332
                  89************************************99999955554444448879**************************************999989999**************...*******************88876634444445555555556***********************************985 PP

>> PF07342.6  Protein of unknown function (DUF1474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0004       1.8      17      58 ..      23      64 ..      16      70 .. 0.85
   2 ?   -2.2   0.0      0.94   4.3e+03      55      81 ..     173     201 ..     160     204 .. 0.67
   3 ?    1.0   0.0       0.1   4.6e+02      27      51 ..     314     338 ..     309     384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0004
    PF07342.6 17 ekiedlkdshgwffeelyvhepnhllnkdelikegasyherr 58
                  ++ ++++shgw    +y+h   hl  k+el + +    e r
  MMETSP0890-20130614|28209_1 23 SRVAEMAESHGWQRSAQYIHTKFHLSPKEELEESSQHVNEWR 64
                 588999**********************99988877766655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.94
    PF07342.6  55 herrikndqvvd..llhlylkefdeilkk 81 
                  +++r+k+dq  d   l +y  ++  +l+k
  MMETSP0890-20130614|28209_1 173 LQNRMKQDQSDDpnKLAMYQSQMAAVLEK 201
                  56677777765422577888888888777 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.1
    PF07342.6  27 gwffeelyvhepnhllnkdelikeg 51 
                   wf  + +     +llnk+++i++ 
  MMETSP0890-20130614|28209_1 314 YWFTANCFSVAQTQLLNKNDTIRKL 338
                  5999999999999*******99875 PP

>> PF02520.12  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.14   6.5e+02      15      56 ..      15      60 ..      11      66 .. 0.68
   2 ?   -1.3   0.3      0.36   1.6e+03      38      75 ..     163     200 ..     156     204 .. 0.69
   3 ?   10.9   0.3     6e-05      0.27      53      95 ..     349     395 ..     344     414 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.14
   PF02520.12 15 tltiaeieeqleaWaekyg..vadqy..eeFkkkvkakkeeleknv 56
                 +++++e+ +++++ ae +g   ++qy  ++F+   k++ ee +++v
  MMETSP0890-20130614|28209_1 15 EISTREVLSRVAEMAESHGwqRSAQYihTKFHLSPKEELEESSQHV 60
                 6789999999********9664444422455555555555555555 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.36
   PF02520.12  38 yeeFkkkvkakkeeleknvtavisnLssvdaklsaIld 75 
                  +++ k +++  ++++++ +++  ++L+  ++++ a+l+
  MMETSP0890-20130614|28209_1 163 MQKAKPEIDVLQNRMKQDQSDDPNKLAMYQSQMAAVLE 200
                  55556666677777777777777777777777777766 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 6e-05
   PF02520.12  53 eknvtavisnLs....svdaklsaIldnkslTrkqkkeaiqalkkql 95 
                  + ++t+++++Ls    +v++k++aIld +++++ q +  + + +kq+
  MMETSP0890-20130614|28209_1 349 STKRTDAVAELSdafsTVQTKIQAILDRDKQSITQVDPSVFEKRKQE 395
                  6678888888888888******************9887776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.97
# Mc/sec: 1099.36
//
Query:       MMETSP0890-20130614|28225_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       807  (0.0590257); expected 273.4 (0.02)
Passed bias filter:                      563  (0.0411791); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 610.27
//
Query:       MMETSP0890-20130614|28223_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   12.8   0.0        0.1   12.1   0.0    1.3  1  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
        0.1   12.2   0.0       0.15   11.6   0.0    1.2  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05       0.1      66     156 ..     148     238 ..     118     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
                  TTE..EE------GGG-EE-----EE-TT-S--------STTS--GGG-.---EEEEE----SSS-HHHHHHHHHHHHHH----.--EEEE- CS
    PF08840.6  66 keeskvlpelkesleklkvnenglldildtlallksklaekalipvera.kgpillvvgedDknwpSkesaekaserLkkagkkvevqlltY 156
                  +  s v+pel   +++  + ++ +  +++  + +++ l ++++i+ve+    +  ++++ +D+ ++++ +a  + ++Lk+ +  ++ q   Y
  MMETSP0890-20130614|28223_1 148 EPYSTVVPELASPNNNS-QPDPSAATFVRPDDVTEEMLVSNYRIKVEKRyTKHKTFFASFNDEKINTEAMATLILQQLKAYESAKRFQRCNY 238
                  33347888888888876.55666667777777788889999*******94445689***********************9888777776665 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05      0.15      37     205 ..      76     280 ..      60     304 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.1e-05
                  HHHHHHHHHHHCCSSS.B--BEEE..E-CSSCSCEEEEEE---HHBCCT.CSHHHHHHHHHHHHHHHHHHHHHS--T.....................TSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHH...HHHHHHHHHHHHHHHHHHC.......SS--EEB-SS-SGGGEEEETTTTEEEE---......TT-BBE-TCHHHH CS
   PF01636.18  37 lrrevallrlLakagi.pvPevlagdtdddvlgllfalleyvpgevler.klnarqlpallealaellaalhqadpa.....................adpladflapyltllrllesataalvaselle...lleeleervlaalaallpg.......aeppvllHgDlhpgNllvdpddgrvgviDf......edaglgpplyDla 205
                  lr+e  +++++  +     P+ +a  + +  ++l  ++l++v g +++    n   +p  l  l  +l +lh+ ++                      + +++d ++  + +  ++ +  +++ +++++      e++  +++a+l  ++++        ++   +HgD+   N++++ +d +v ++D        +++ g+  yDl 
  MMETSP0890-20130614|28223_1  76 LRGEIFWYQHIPITLQeLFPAAHA-VREHPAQELSSVVLDRVVGVTYSHlVVNSCITPGRLMLLLNALNRLHREPYStvvpelaspnnnsqpdpsaatFVRPDDVTEE-MLVSNYRIKVEKRYTKHKTFFasfNDEKINTEAMATLILQQLKayesakrFQRCNYIHGDPVFSNVMLT-TDSKVKFLDMrgclgdTLTTAGDLNYDLS 280
                  666666777766443344555555.34666666678889999999999985555677888889999999999997554555444444444444444445555555544.333333333333444444444355445555555555444444445552333555566************.66666688875555555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:01.29
# Mc/sec: 681.75
//
Query:       MMETSP0890-20130614|28234_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-47  156.8  28.9    3.6e-11   42.3   0.2    8.6  8  PF00514.18 Armadillo/beta-catenin-like repeat
    2.8e-14   52.6   1.5    5.5e-14   51.7   0.0    2.3  3  PF04564.10 U-box domain
    8.1e-12   45.1  30.5    2.3e-07   30.8   4.6    5.3  6  PF13646.1  HEAT repeats
    1.1e-08   34.3  20.6       0.68   10.0   0.0    8.9  9  PF02985.17 HEAT repeat
    5.4e-05   23.5  37.8      0.034   14.6   1.3    7.8  7  PF13513.1  HEAT-like repeat
    0.00016   19.6   0.0       0.13   10.0   0.0    2.3  2  PF05804.7  Kinesin-associated protein (KAP)
  ------ inclusion threshold ------
       0.04   13.5   0.6        1.1    8.8   0.0    3.1  3  PF09759.4  Spinocerebellar ataxia type 10 protein domain
      0.046   13.1   0.1       0.13   11.7   0.1    1.7  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.89   1.5e+03      15      33 ..      90     108 ..      90     109 .. 0.89
   2 !   15.8   0.2   4.8e-06    0.0081       5      41 .]     502     537 ..     498     537 .. 0.93
   3 !    6.7   0.2    0.0034       5.7       2      34 ..     540     576 ..     539     582 .. 0.73
   4 !   27.4   0.1     1e-09   1.8e-06       5      40 ..     589     626 ..     586     627 .. 0.95
   5 !   35.1   0.2   3.8e-12   6.4e-09       1      41 []     628     670 ..     628     670 .. 0.94
   6 !   42.3   0.2   2.1e-14   3.6e-11       1      41 []     672     713 ..     672     713 .. 0.97
   7 !   25.0   0.1   6.1e-09     1e-05       1      40 [.     715     756 ..     715     757 .. 0.96
   8 !   19.7   0.0   2.8e-07   0.00049       1      37 [.     760     798 ..     760     801 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.89
                  HHHHHHHC-SSHHHHHHHH CS
   PF00514.18  15 ppLvqLLksgdeevqeeAa 33 
                  p+L +LL     +v +eA+
  MMETSP0890-20130614|28234_1  90 PVLAKLLEVSYVKVIREAT 108
                  89******99999999986 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 4.8e-06
                  HHHHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   5 kqavieaGavppLvqLLksgdeevqeeAawALsNLaa 41 
                   +a+ +aG++p Lv LL  g++  +e+Aa AL+ La+
  MMETSP0890-20130614|28234_1 502 ARAIAQAGGIPLLVILLA-GSPPAREAAAMALCRLAR 537
                  6799**************.***************996 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0034
                  HHHHHHHHHCHHHHHHHHHHC....-SSHHHHHHHHH CS
   PF00514.18   2 penkqavieaGavppLvqLLk....sgdeevqeeAaw 34 
                  ++n+ ++++a ++ + v+LL+       + ++++Aa+
  MMETSP0890-20130614|28234_1 540 RDNRVLIVNARGISACVRLLQtnllAVTDLTRQAAAG 576
                  689******************8774444444444444 PP

  == domain 4    score: 27.4 bits;  conditional E-value: 1e-09
                  HHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18   5 kqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                  k a+ +aGa+p Lv+LL+  s +++++ +Aa++L+ +a
  MMETSP0890-20130614|28234_1 589 KVAIANAGAIPLLVKLLDdqSASDDTKADAARCLWSIA 626
                  77999*******************************98 PP

  == domain 5    score: 35.1 bits;  conditional E-value: 3.8e-12
                  CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALsNLaa 41 
                  +++ k a+ +aGa+p Lv+L++   g+ +v+e+Aa+AL+NLaa
  MMETSP0890-20130614|28234_1 628 NDQKKIAIANAGAIPLLVNLIDrdAGSIGVREAAAGALQNLAA 670
                  577889999********************************96 PP

  == domain 6    score: 42.3 bits;  conditional E-value: 2.1e-14
                  CHHHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18   1 spenkqavieaGavppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  +++nk+a+i+aGavppLv+LL  s+ e  +e Aa+AL+NLa+
  MMETSP0890-20130614|28234_1 672 NSDNKAAIIRAGAVPPLVRLLAnSQVETARETAAGALQNLAK 713
                  799*************************************95 PP

  == domain 7    score: 25.0 bits;  conditional E-value: 6.1e-09
                  CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHHHHH CS
   PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALsNLa 40 
                  + +nk  +ieaG++ppL++ L+  + + + q+ +a+A+ NL 
  MMETSP0890-20130614|28234_1 715 NEDNKSVLIEAGVLPPLIATLSdaNASARSQRTSARAIENLV 756
                  678*************************************95 PP

  == domain 8    score: 19.7 bits;  conditional E-value: 2.8e-07
                  CHHHHHHHHHCHHHHHHHHHHC..-SSHHHHHHHHHHHH CS
   PF00514.18   1 spenkqavieaGavppLvqLLk..sgdeevqeeAawALs 37 
                  + +n++avi+aGa+p+L++ L   + d ev+++ a AL 
  MMETSP0890-20130614|28234_1 760 NEDNRKAVIDAGAIPVLCDKLIdgHADIEVRQAVAEALK 798
                  679***************98888***********99996 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   3.3e+03      29      57 ..     248     276 ..     239     298 .. 0.58
   2 !   51.7   0.0   3.2e-17   5.5e-14       1      72 [.     317     391 ..     317     392 .. 0.92
   3 ?   -3.1   0.0         4   6.8e+03      29      45 ..     830     846 ..     821     850 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.9
                  HHHHHHHTT.SSB-TTT-SB--GGGSEE- CS
   PF04564.10  29 stiekhllsrdktdPftreplteeelipn 57 
                  ++i++h l  ++ dP  ++ +++e+ i++
  MMETSP0890-20130614|28234_1 248 KKIDHHRLFSEEQDPPLKNLIAKEKQIDQ 276
                  55666655555555554444444444433 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 3.2e-17
                  --GGGB-TTT-SB-SSEEE-..TTT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHCC CS
   PF04564.10   1 vPdefldpitlelmkdPvil..PsgitvDrstiekhllsrdktdPft.replteeelipnlelKekIdkfleekk 72 
                  vPd f++pitle+m++Pv l   sg +++r+++e++l+ +  +dP+t  e+    e  pn+ lKe+I+ +  e+ 
  MMETSP0890-20130614|28234_1 317 VPDQFRCPITLEIMCEPVFLftQSGRSFEREALEHWLELHPTVDPLTnEEHGMLLEYAPNRVLKEVIALWCVEHD 391
                  8*****************8644799**************99******67778889***************99985 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 4
                  HHHHHHHTT.SSB-TTT CS
   PF04564.10  29 stiekhllsrdktdPft 45 
                  s+i+ hl++  ++ P++
  MMETSP0890-20130614|28234_1 830 SIIATHLRRGPANIPLN 846
                  78999999977777877 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   4.6    0.0023       3.9       7      84 ..     469     575 ..     466     579 .. 0.71
   2 !   20.1   3.1     3e-07   0.00052      14      87 ..     568     665 ..     552     666 .. 0.80
   3 !   30.8   4.6   1.4e-10   2.3e-07       1      87 [.     598     708 ..     598     709 .. 0.84
   4 !   14.2   1.1   2.1e-05     0.036      31      88 .]     726     798 ..     706     798 .. 0.67
   5 !   13.2   1.1   4.4e-05     0.075       1      56 [.     728     798 ..     728     818 .. 0.61
   6 ?    0.1   0.0      0.52   8.9e+02      12      26 ..     802     816 ..     797     834 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0023
    PF13646.1   7 aLekdpdpevraa.aieaLgqlgseea...............lpaLlelLkdsdpevRraAaeaLgkl...............gdpealpaLlklldddedavvreaaa 84 
                  +L ++ d+evra+ a+ +L  +++ e+               +p+L+ lL   +p  R+aAa+aL +l               g  ++++ L   l   +d + r+aaa
  MMETSP0890-20130614|28234_1 469 RLSSHYDEEVRARaAASLLKSMEDMEIdegepvaraiaqaggIPLLVILLA-GSPPAREAAAMALCRLarrprdnrvlivnarGISACVRLLQTNLLAVTDLT-RQAAA 575
                  687899*****9626678887888777777777777888888999999996.999***********9955555544444444445556666666666666665.45554 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 3e-07
    PF13646.1  14 pevraaaieaLg...........qlgseealpaLlelLkdsd..pevRraAaeaLgkl..........gdpealpaLlkllddde.davvreaaaeaL 87 
                  + +r+aa+ +L             ++++ a+p+L++lL+d++   ++++ Aa++L  +          ++  a+p L+ l+d+d  +  vreaaa aL
  MMETSP0890-20130614|28234_1 568 DLTRQAAAGILQhiacfsmnykvAIANAGAIPLLVKLLDDQSasDDTKADAARCLWSIavndqkkiaiANAGAIPLLVNLIDRDAgSIGVREAAAGAL 665
                  578999999999888888888888899999********77652278*********988554444333348889***********74668******999 PP

  == domain 3    score: 30.8 bits;  conditional E-value: 1.4e-10
    PF13646.1   1 leaLlaaLek.dpdpevraaaieaLg..........qlgseealpaLlelL..kdsdpevRraAaeaLgklg...........dpealpaLlklldddedavvreaaaeaL 87 
                  ++ L+++L + +++++++a a+++L            ++++ a+p+L+ l+  +  +  vR+aAa aL++l+              a+p+L++ll++++ ++ re+aa aL
  MMETSP0890-20130614|28234_1 598 IPLLVKLLDDqSASDDTKADAARCLWsiavndqkkiAIANAGAIPLLVNLIdrDAGSIGVREAAAGALQNLAannsdnkaaiiRAGAVPPLVRLLANSQVETARETAAGAL 708
                  5889999955788999**********99999999888889999********63345788************65555444444446699********************999 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 2.1e-05
    PF13646.1  31 ealpaLlelLkdsd..pevRraAaeaLgkl.......g.....dpealpaLlkllddde.davvreaaaeaLg 88 
                   +lp+L++ L+d +  ++ +r+ a+a+ +l             d  a+p+L++ l d + d  vr+a+aeaL+
  MMETSP0890-20130614|28234_1 726 GVLPPLIATLSDANasARSQRTSARAIENLvwssnedNrkaviDAGAIPVLCDKLIDGHaDIEVRQAVAEALK 798
                  5588888888887633457788888888877766554133455666888888888777525678888888885 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 4.4e-05
    PF13646.1   1 leaLlaaLek..dpdpevraaaieaLg............qlgseealpaLlelL..kdsdpevRraAaeaLg 56 
                  l++L+a L +  +++++ +++ ++a+                ++ a+p L + L   + d evR+a+aeaL 
  MMETSP0890-20130614|28234_1 728 LPPLIATL-SdaNASARSQRTSARAIEnlvwssnednrkAVIDAGAIPVLCDKLidGHADIEVRQAVAEALK 798
                  57788888.513333344455666666555555544443334447788888766444566678888888886 PP

  == domain 6    score: 0.1 bits;  conditional E-value: 0.52
    PF13646.1  12 pdpevraaaieaLgq 26 
                  p p++r ++++aLg 
  MMETSP0890-20130614|28234_1 802 PTPKLRCRVARALGS 816
                  557778888888873 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   1.9e+02       8      24 ..     470     486 ..     467     491 .. 0.78
   2 ?    4.6   0.1     0.022        38      17      29 ..     525     537 ..     520     538 .. 0.86
   3 ?   -2.4   0.0       3.9   6.6e+03      16      28 ..     570     582 ..     558     582 .. 0.80
   4 ?    4.8   0.1     0.018        32       2      27 ..     598     625 ..     597     627 .. 0.81
   5 !    8.8   0.0   0.00097       1.7       2      29 ..     641     670 ..     640     671 .. 0.90
   6 !    9.4   0.0   0.00062       1.1       2      30 ..     685     714 ..     684     715 .. 0.87
   7 ?    0.9   0.0      0.34   5.8e+02       1      17 [.     727     743 ..     727     755 .. 0.86
   8 !   10.0   0.0    0.0004      0.68       2      28 ..     773     801 ..     772     804 .. 0.84
   9 ?   -1.9   0.0       2.7   4.6e+03      12      25 ..     802     815 ..     801     816 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.11
                  HHTSSSHHHHHHHHHHH CS
   PF02985.17   8 llnDpspeVReaAaeaL 24 
                  l+++ ++eVR+ Aa +L
  MMETSP0890-20130614|28234_1 470 LSSHYDEEVRARAAASL 486
                  445559*******9988 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.022
                  HHHHHHHHHHHHH CS
   PF02985.17  17 ReaAaeaLgalae 29 
                  ReaAa aL++la+
  MMETSP0890-20130614|28234_1 525 REAAAMALCRLAR 537
                  ***********96 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.9
                  HHHHHHHHHHHHH CS
   PF02985.17  16 VReaAaeaLgala 28 
                   R+aAa  L  +a
  MMETSP0890-20130614|28234_1 570 TRQAAAGILQHIA 582
                  699**99998875 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.018
                  HHHHHHHHTSS..SHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDp..speVReaAaeaLgal 27 
                  +Pll+kll D+  s + ++ Aa++L  +
  MMETSP0890-20130614|28234_1 598 IPLLVKLLDDQsaSDDTKADAARCLWSI 625
                  8********9977888888888887666 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.00097
                  HHHHHHHHT.SS.SHHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllklln.Dp.speVReaAaeaLgalae 29 
                  +Pll++l+  D  s  VReaAa aL +la 
  MMETSP0890-20130614|28234_1 641 IPLLVNLIDrDAgSIGVREAAAGALQNLAA 670
                  7999999999999999***********986 PP

  == domain 6    score: 9.4 bits;  conditional E-value: 0.00062
                  HHHHHHHHT.SSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   2 lPlllklln.DpspeVReaAaeaLgalaev 30 
                  +P+l++ll  ++ +  Re+Aa aL +la++
  MMETSP0890-20130614|28234_1 685 VPPLVRLLAnSQVETARETAAGALQNLAKH 714
                  688887777477****************97 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.34
                  HHHHHHHHHTSSSHHHH CS
   PF02985.17   1 llPlllkllnDpspeVR 17 
                  +lP+l+  l+D +++ R
  MMETSP0890-20130614|28234_1 727 VLPPLIATLSDANASAR 743
                  69*********987766 PP

  == domain 8    score: 10.0 bits;  conditional E-value: 0.0004
                  HHHHH.HHHT.SSSHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlll.klln.DpspeVReaAaeaLgala 28 
                  +P+l+ kl+  + + eVR+a+aeaL  l 
  MMETSP0890-20130614|28234_1 773 IPVLCdKLIDgHADIEVRQAVAEALKVLT 801
                  7899966777777************9986 PP

  == domain 9    score: -1.9 bits;  conditional E-value: 2.7
                  SSHHHHHHHHHHHH CS
   PF02985.17  12 pspeVReaAaeaLg 25 
                  p+p+ R+ +a+aLg
  MMETSP0890-20130614|28234_1 802 PTPKLRCRVARALG 815
                  67999********9 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.7     0.063   1.1e+02       2      52 ..     477     532 ..     476     535 .. 0.72
   2 ?    3.5   1.7     0.061     1e+02       1      54 [.     522     580 ..     522     581 .. 0.58
   3 ?    3.5   1.6     0.059     1e+02      24      52 ..     592     622 ..     569     622 .. 0.74
   4 !   14.6   1.3     2e-05     0.034       7      55 .]     621     668 ..     616     668 .. 0.82
   5 !   12.8   0.2   7.2e-05      0.12      26      55 .]     681     711 ..     669     711 .. 0.79
   6 ?    3.7   0.1     0.053        90      28      55 .]     726     755 ..     715     755 .. 0.79
   7 ?    5.8   0.3     0.011        19      21      53 ..     788     815 ..     776     817 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.063
    PF13513.1   2 rvRraAaw.aLGr.....laggeprllepavpellpaLlelLeddddeVReaAawAL 52 
                  +vR+ Aa+  L +     + +gep   + a+   +p+L+ lL+  ++  ReaAa AL
  MMETSP0890-20130614|28234_1 477 EVRARAAAsLLKSmedmeIDEGEPVARAIAQAGGIPLLVILLA-GSPPAREAAAMAL 532
                  5786666636655678888888888888888888999998884.33344****9998 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.061
    PF13513.1   1 wrvRraAawaLGr..laggeprllep....avpellpaLlelLeddddeVReaAawALgr 54 
                  ++ R+aAa+aL +  ++ ++++ +       + +++ +L+  L    d +R+aAa+ L +
  MMETSP0890-20130614|28234_1 522 PPAREAAAMAL-CrlARRPRDNRVLIvnarGISACVRLLQTNLLAVTDLTRQAAAGILQH 580
                  577********.654444444443331122444555555533333778889999988865 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.059
    PF13513.1  24 pavpellpaLlelLedddd..eVReaAawAL 52 
                   a+  ++p+L++lL d ++  ++++ Aa++L
  MMETSP0890-20130614|28234_1 592 IANAGAIPLLVKLLDDQSAsdDTKADAARCL 622
                  5677799*******99555569999999998 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 2e-05
    PF13513.1   7 AawaLGrlaggeprllepavpellpaLlelL.edddd....eVReaAawALgrl 55 
                  ++w +   a++ +  ++ a+  ++p+L++l+ +   d     VReaAa+AL +l
  MMETSP0890-20130614|28234_1 621 CLWSI---AVNDQKKIAIANAGAIPLLVNLIdR---DagsiGVREAAAGALQNL 668
                  67777...599999999**************33...3334788********986 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 7.2e-05
    PF13513.1  26 vpellpaLlelLeddddeV.ReaAawALgrl 55 
                     ++p+L+ lL+++  e+ Re+Aa+AL +l
  MMETSP0890-20130614|28234_1 681 RAGAVPPLVRLLANSQVETaRETAAGALQNL 711
                  55678999999988888999********986 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.053
    PF13513.1  28 ellpaLlelLeddddeV..ReaAawALgrl 55 
                   +lp+L++ L+d +++   ++++a+A+++l
  MMETSP0890-20130614|28234_1 726 GVLPPLIATLSDANASArsQRTSARAIENL 755
                  588999999988888666799999999986 PP

  == domain 7    score: 5.8 bits;  conditional E-value: 0.011
    PF13513.1  21 llepavpellpaLlelLeddddeVReaAawALg 53 
                   +++av e+l+ L+     + ++ R  +a+ALg
  MMETSP0890-20130614|28234_1 788 EVRQAVAEALKVLT-----PTPKLRCRVARALG 815
                  57889999999999.....***99*******99 PP

>> PF05804.7  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   7.8e-05      0.13     357     418 ..     583     648 ..     532     672 .. 0.73
   2 !    8.3   0.0   0.00025      0.43     310     422 ..     663     784 ..     643     799 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.8e-05
    PF05804.7 357 sfdtklrrkmvkaGllPklvslldd....dkkkgialkvlyhlslddkvksmfaytdcikllmkal 418
                   f  + +  + +aG +P lv+lldd    d+ k  a + l+ ++++d+ k  +a + +i+ll++ +
  MMETSP0890-20130614|28234_1 583 CFSMNYKVAIANAGAIPLLVKLLDDqsasDDTKADAARCLWSIAVNDQKKIAIANAGAIPLLVNLI 648
                  466677777889999999999998633335567788899999999999999999999999998765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00025
    PF05804.7 310 sflkklsi.fdenkdemeeldivekllkllpiehed.llkvtlklllnls.fdtklrrkmvkaGllPklvslldddkk.......kgialkvlyhlslddkvksmfaytdcikllmkallesl 422
                    l+ l+   ++nk  + + + v  l++ll  ++ +  ++ +   l nl+  + ++++ +++aG+lP l++ l+d +           a++ l   s +d+ k+++  + +i++l ++l+++ 
  MMETSP0890-20130614|28234_1 663 GALQNLAAnNSDNKAAIIRAGAVPPLVRLLANSQVEtARETAAGALQNLAkHNEDNKSVLIEAGVLPPLIATLSDANAsarsqrtSARAIENLVWSSNEDNRKAVI-DAGAIPVLCDKLIDGH 784
                  556666551469****************9976665515666677899997357789999**********9999886641111111234677788888888888876.5678999999988765 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00067       1.1      23      69 ..     634     680 ..     615     685 .. 0.86
   2 ?    1.1   0.0      0.17     3e+02      47      68 ..     701     722 ..     698     727 .. 0.89
   3 ?   -2.8   0.0       2.8   4.8e+03      52      68 ..     750     767 ..     731     777 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00067
    PF09759.4  23 kvreldglaliLsntriDdenPflkEwailairnLlennkenqelia 69 
                  ++ + ++++l+ +    D+   +++E a  a++nL +nn+ n+  i 
  MMETSP0890-20130614|28234_1 634 AIANAGAIPLLVNLIDRDAGSIGVREAAAGALQNLAANNSDNKAAII 680
                  577778899999999****************************9885 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.17
    PF09759.4  47 kEwailairnLlennkenqeli 68 
                  +E a  a++nL ++n+ n++++
  MMETSP0890-20130614|28234_1 701 RETAAGALQNLAKHNEDNKSVL 722
                  799999************9876 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.8
    PF09759.4  52 lairnLl.ennkenqeli 68 
                   ai nL+  +n+ n++ +
  MMETSP0890-20130614|28234_1 750 RAIENLVwSSNEDNRKAV 767
                  355555423344455544 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.5e-05      0.13      12      45 ..     321     355 ..     316     367 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.5e-05
                  -B-TTT-SB-SSEEEE.S----EEEHHHHHHHHTT CS
    PF11789.3  12 lkCpltlkpfkePvts.kkCnHvFEkeaIlkmlkr 45 
                   +Cp+tl+ + ePv   ++   +FE+ea+++ l+ 
  MMETSP0890-20130614|28234_1 321 FRCPITLEIMCEPVFLfTQSGRSFEREALEHWLEL 355
                  69************752789*********999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.37u 0.32s 00:00:01.69 Elapsed: 00:00:00.88
# Mc/sec: 2320.11
//
Query:       MMETSP0890-20130614|28249_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1292  (0.0944997); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:00.94
# Mc/sec: 1608.62
//
Query:       MMETSP0890-20130614|28242_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-44  151.0   0.5    4.7e-44  150.6   0.3    1.2  1  PF00294.19 pfkB family carbohydrate kinase
    0.00041   19.5   0.1    0.00067   18.8   0.1    1.3  1  PF08543.7  Phosphomethylpyrimidine kinase
     0.0092   15.1   0.2       0.02   14.0   0.0    1.5  2  PF01256.12 Carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.3     1e-47   4.7e-44      55     299 ..       1     236 [.       1     238 [. 0.88

  Alignments for each domain:
  == domain 1    score: 150.6 bits;  conditional E-value: 1e-47
                  EEEEE--TT.-HHHHHHHHTTTEEETTEEESSS-EEEEEEEEE-TTCEEEEEEE---GGGHHHHHHHHCHCHHTTEEEEHHEEE-SSSHHHHHHHHHHHHHHTT.EEECCCCCT--..HHCHHHHCSEESEECCCHHHHHHHCCSSHHCHHHHHHHHHHHHH-T-...SEEEEB------EEEE.SS--EEE--.-SS--SB-TT---TTT--HHHHHHTT--HHHHHHHHHHHHHHHHT----GGG-H CS
   PF00294.19  55 figavGddkfgeflleelkkegvdtdyvkideetrtglalilvdgdgertivfnrgaaadltpeelpedllaeadvlylsgallseplpeatlealieaaknngkfdpnlrdplwsqaleklrellpladilkpNeeEaealtgekdndveevlaalhklkakga...ktvvvtlGkdGallve.kdgevhvppvpkvkvvDttGAGDafvagflagllagksleealrlanavaalvvqkagaisslp 299
                  +i +vGdd+fg+ + ++lk++gvdt+yv +  +++ g ali+v ++  +tiv+ +ga+a+l+pe      ++++  + l+ + ++ + + +++ +++ ++  n+       +p++s+   + + +l+ adi+++Ne E+e++t+ + +++ ++ + ++ l+ak     ++vv tlG++Gal+v   + + h+p++  ++vvDttGAGD+f+++++a l+++ +l  a+ lan +aal+vq++ ++ s p
  MMETSP0890-20130614|28242_1   1 MIAKVGDDNFGQAMTDNLKECGVDTSYVSVASGAPSGCALITVAEN-TNTIVIVPGANAKLSPE---DIPIKQENDVLLCQMEVPVETSLEAMRQCSGIKIVNT-------APIPSG--GVPDSFLQAADIVCANEVELELMTSIPADTIISATHSAKALIAKKSldhTVVVATLGSNGALIVGnYGPTIHIPAITDITVVDTTGAGDSFLGALAAFLAQNFPLVLAVFLANLTAALAVQRPTTQPSYP 236
                  5789****************************************87.8***************8...4566666666666645566555555555555555555.......677764..7888999*********************9999999999999999999999**************978889999999***********************************************9997755 PP

>> PF08543.7  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.5e-07   0.00067     115     225 ..     111     219 ..     106     234 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.5e-07
                  HTGGG-SEEE-BHHHHHHHHT----SHHHHHH---HHHH.---.-EEEEB----------..-EEE..-----EE--------S-------HHHHHHHHHGGGSS----HHHHHH CS
    PF08543.7 115 eLlplatlvtPNlpEaeaLlgkkikteedmkeaakklle.lga.kavlikGghlegeeavvtdvly..dgeevveleaerietknthGtGCtlssaiaaelakgksleeAvkkAk 225
                  ++l+ a++v  N  E+e +++ +++t  ++ + ak+l++     ++v++      ++ a     ++   g ++++   + i+  +t G+G+++  a+aa+la++ +l  Av  A+
  MMETSP0890-20130614|28242_1 111 SFLQAADIVCANEVELELMTSIPADTIISATHSAKALIAkKSLdHTVVVATLG--SNGAL----IVgnYGPTIHIPAITDITVVDTTGAGDSFLGALAAFLAQNFPLVLAVFLAN 219
                  67899***********************9999999998864441444443333..23333....22336777788888999999************************9998776 PP

>> PF01256.12  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.5   2.3e+03      24      40 ..      36      52 ..      27      79 .. 0.60
   2 !   14.0   0.0   4.5e-06      0.02     123     226 ..     122     232 ..     105     244 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.5
                 -----EEEEESSTTTCC CS
   PF01256.12 24 lgaglvsvateseaiav 40
                 +g+ l++va + + i  
  MMETSP0890-20130614|28242_1 36 SGCALITVAENTNTIVI 52
                 56666666654444433 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.5e-06
                  -HHHHHHHTT--HH.....HCCSHHHHHHHHHHHHTTEEEEE----EEEEE---EEEE-..---GGG------------HHHHCCTTSSHHHHHHHHHHHHHHHHHHHCCC CS
   PF01256.12 123 hkkEfkrLlkaivk.....leddrlelarelaqklnavvllkgekdvivspegevlins..tgssalakGGsGDvLaGligalLaqneasyeaaiaaawlhgaasdeaaek 226
                  + +E + ++  +        ++ ++ +a++  ++  +v  l  +  +iv + g++++++  t+     + G GD   G+++a+Laqn +   a+  a    + a ++ + +
  MMETSP0890-20130614|28242_1 122 NEVELELMTSIPADtiisaTHSAKALIAKKSLDHTVVVATLGSNGALIVGNYGPTIHIPaiTDITVVDTTGAGDSFLGALAAFLAQNFPLVLAVFLANLTAALAVQRPTTQ 232
                  667777777666665544455556666666666666666677889999999****99982246677889*******************88888888877777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 1053.05
//
Query:       MMETSP0890-20130614|28260_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   13.7   0.0      0.099   12.7   0.0    1.4  1  PF07584.6 Aerotolerance regulator N-terminal


Domain annotation for each model (and alignments):
>> PF07584.6  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.2e-06     0.099      27      72 ..     237     281 ..     233     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.2e-06
    PF07584.6  27 krrprevkfsslrlleevlkderalqrlrkwllllLrllalallil 72 
                  +r++     ss+ ++e++  ++++ +++r++ ll++ l+ la+ ++
  MMETSP0890-20130614|28260_1 237 QRKRISSAHSSTSFFESSDLSKSQ-KNKRRNFLLICHLVFLACTAF 281
                  345555599******999999999.99**************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.78
# Mc/sec: 1124.44
//
Query:       MMETSP0890-20130614|28278_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   12.8   0.7       0.18   11.9   0.5    1.4  1  PF05658.9 Hep_Hag


Domain annotation for each model (and alignments):
>> PF05658.9  Hep_Hag
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   1.3e-05      0.18      11      25 ..       8      22 ..       8      23 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
                 ---EE-STT-EE--- CS
    PF05658.9 11 snavAsGdnSvAiGa 25
                 s+a+A+ dn++A+G+
  MMETSP0890-20130614|28278_1  8 SAAYANEDNATAFGN 22
                 579***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 232.37
//
Query:       MMETSP0890-20130614|28276_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   13.1   0.0       0.61    9.6   0.0    2.5  2  PF08807.5 Bacterial domain of unknown function (DUF1798)
      0.054   12.6   0.0       0.17   11.0   0.0    1.8  1  PF12851.2 Oxygenase domain of the 2OGFeDO superfamily
          1    9.1   5.2        9.5    6.1   0.0    3.0  3  PF04001.8 Transcription factor Vhr1


Domain annotation for each model (and alignments):
>> PF08807.5  Bacterial domain of unknown function (DUF1798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.17   7.9e+02      48      84 ..     346     381 ..     338     385 .. 0.85
   2 ?    9.6   0.0   0.00013      0.61      23      50 ..     432     459 ..     417     465 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.17
    PF08807.5  48 eaalsiikeerpkylheeqlesvvenleelsvqsffp 84 
                  e+++++i+  + + l ++  +++  ++   +v+++  
  MMETSP0890-20130614|28276_1 346 ENNQKFIQL-KQQRLAQQDPRATLTKVGDAAVECYGR 381
                  677899999.999999999999999999999999965 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00013
    PF08807.5  23 geeyDFyeevkPfvdkvdqllkewkeaa 50 
                  ++  DFy++vk +++k+++ +k++ + a
  MMETSP0890-20130614|28276_1 432 HHRLDFYKDVKGATNKFKDRIKNLPDGA 459
                  5678*****************9987665 PP

>> PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05      0.17      67     169 ..     208     301 ..     184     302 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.6e-05
    PF12851.2  67 lglkegrpfsgvtacldfcahsHrDrhnmqngstvvvtltrgdedegllvlplldpdiggvavapthgsvlilcakkelHattpvks...pnrnhptRislvfyah 169
                  +     +pfs+++++ +  a++H D     n+++ + ++  g+ ++g l   +      g+  ++ ++ +  ++++  lH t+       +  + ++Ris++ +ah
  MMETSP0890-20130614|28276_1 208 TKAGNLFPFSSLQINYNYAAAKHVDG----NNIGPSYIMSIGSHTGGELWTED-----QGTINCYNKWKL--FDGN-KLHYTQAFDLkksSSSQIGERISFIAFAH 301
                  4445569*******************....*******************9999.....888888888874..6777.56777765442236677889999999999 PP

>> PF04001.8  Transcription factor Vhr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6       1.3   5.8e+03      22      54 ..      39      71 ..      31      76 .. 0.66
   2 ?    6.1   0.0    0.0021       9.5      23      57 ..     264     298 ..     253     314 .. 0.89
   3 ?    4.4   0.0    0.0069        31      22      45 ..     416     439 ..     412     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
    PF04001.8 22 ekkwkrfssrrlelidklelskkkaseqdenik 54
                 e k k+ s +rl + ++    k  ++e  ++ k
  MMETSP0890-20130614|28276_1 39 ESKLKQSSVKRLVIKEEETCKKDETTEDTQKKK 71
                 778899999999766665555555666555555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0021
    PF04001.8  23 kkwkrfssrrlelidklelskkkaseqdenikqia 57 
                  +kwk f   +l+    ++l k  +s+  e i+ ia
  MMETSP0890-20130614|28276_1 264 NKWKLFDGNKLHYTQAFDLKKSSSSQIGERISFIA 298
                  79**********************99999999887 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0069
    PF04001.8  22 ekkwkrfssrrlelidklelskkk 45 
                  e kwk+f+   lel+ +  l  +k
  MMETSP0890-20130614|28276_1 416 ELKWKNFTHTSLELVKHHRLDFYK 439
                  789************999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       811  (0.0593183); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.41s 00:00:01.37 Elapsed: 00:00:01.13
# Mc/sec: 1246.53
//
Query:       MMETSP0890-20130614|28287_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   10.9   0.8       0.15   10.7   0.6    1.2  1  PF04684.8  BAF1 / ABF1 chromatin reorganising factor
          1    9.3   6.8        9.8    6.1   5.5    2.1  2  PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
        2.4    6.1  13.6        2.9    5.8   9.4    1.0  1  PF09770.4  Topoisomerase II-associated protein PAT1
        8.1    5.9   6.7        1.1    8.6   0.6    2.2  2  PF02439.10 Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> PF04684.8  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   4.5e-05      0.15     283     334 ..     136     193 ..      57     200 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.5e-05
    PF04684.8 283 hqlsgadqhqvqlqh.......qhqhqqqrdvqhqhqqqsqdqhqeqhqshvdsdnnvy 334
                   qls +    +q q+        +q+qqq+++q   q+    q+q++ q++  ++ + y
  MMETSP0890-20130614|28287_1 136 AQLSRGTSAPQQRQQypprenaPYQQQQQQQQQWTPQDSPY-QQQQRGQQQYSNGPQSY 193
                  34443333222222224444333333444444433333322.44444455555555555 PP

>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.62   2.1e+03      94     125 ..      20      47 ..       7      53 .. 0.68
   2 ?    6.1   5.5    0.0029       9.8      68     105 ..     142     180 ..     118     207 .. 0.48

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.62
    PF04695.8  94 yyqqppplvperdwrdllimataaaglgygly 125
                  y  +  p++   ++ + +i a+ +ag g++ +
  MMETSP0890-20130614|28287_1  20 YS-RNSPPF---SMFRCIIGAICLAGTGVAFM 47 
                  33.334444...78889999999999888765 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0029
    PF04695.8  68 sstpsdnys.nqsssssststpqsqqsyyq.qppplvper 105
                  +s p+++++ ++++++++++++ +qq++++ q  p  +++
  MMETSP0890-20130614|28287_1 142 TSAPQQRQQyPPRENAPYQQQQ-QQQQQWTpQDSPYQQQQ 180
                  2222222220222222222222.22222331222222221 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.4   0.00086       2.9     247     300 ..     142     190 ..     119     201 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00086
    PF09770.4 247 qqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslp 300
                    +pq++qq pp+ + p qqqq     ++q+q +p+ ++ +++q  qqq+ + p
  MMETSP0890-20130614|28287_1 142 TSAPQQRQQYPPRENAPYQQQQ-----QQQQQWTPQDSPYQQQQRGQQQYSNGP 190
                  2334455455555554444444.....455555565555555544444444333 PP

>> PF02439.10  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.6   0.00033       1.1       1      17 [.      53      69 ..      53      71 .. 0.87
   2 ?   -0.1   0.4      0.19   6.4e+02       4      11 ..      89      96 ..      84      98 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00033
   PF02439.10  1 IPsstiaIivaVvvGla 17
                 +P+s+iaI++a  ++++
  MMETSP0890-20130614|28287_1 53 VPTSLIAIVAAFFAVFS 69
                 6**********888876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.19
   PF02439.10  4 stiaIiva 11
                 ++++Ii a
  MMETSP0890-20130614|28287_1 89 AMVSIILA 96
                 68888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1113  (0.0814073); expected 273.4 (0.02)
Passed bias filter:                      607  (0.0443973); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.97
# Mc/sec: 513.86
//
Query:       MMETSP0890-20130614|28290_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-10   39.4   5.8    5.7e-10   39.0   4.0    1.2  1  PF10185.4  Chaperone for wingless signalling and trafficking of LDL receptor
     0.0025   17.6   0.5       0.79    9.6   0.2    2.4  2  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
  ------ inclusion threshold ------
       0.18   10.8   1.2       0.27   10.2   0.0    1.8  3  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
        3.6    8.0   8.2       0.69   10.3   0.4    2.2  2  PF08586.5  RSC complex, Rsc14/Ldb7 subunit


Domain annotation for each model (and alignments):
>> PF10185.4  Chaperone for wingless signalling and trafficking of LDL receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   4.0   1.7e-13   5.7e-10       7     146 ..      31     198 ..      25     217 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.7e-13
                  HHHHHHHHHHHHHH.HHHHHHHX.X...XXSS.SXXSXSSTHCCHCXXXXXHHHHHH-----..E..EEEEEEE.....TTST.THHHHHHHHHHHHHHCHHCT-CEEEEEEETTEEEEEE----HHHHHHHHHHTSTTEEEEEEE--EE--XX.............H CS
    PF10185.4   7 dyndadlerlleqweeddddlee.d...elpe.hkrppakidlskldaknpedllklskkGk..t..lmlfvtv.....sgnp.trketeeitklwqtslfnanidiqrfvvddnraifllkdGsqaweikdflveqercaevtiegkeykGka.............k 146
                    ++ +le +++q +e+d+   e d   e+ e  k++   id+s++++ +p+++    +  +  t   m+fvt+      g p t+++ ++i++ + + l    ++i+ + +d  r +  ++ G +  ++kdfl+eq  ++++t ++ +y  ++             k
  MMETSP0890-20130614|28290_1  31 ALSEKELEEMWKQGDEEDELKSEaDiyqEMIEkRKKNGGMIDISQIEKMKPDQVQAKMRHAQseTgmAMIFVTLsayqeDGTPwTEADEQKIAAKFAALLQTGGLKINSYRIDPRRLLVTMQTGWYGADVKDFLLEQPTVMKITWDSVDYLNPNvkqvevsshnsinK 198
                  5677888888888865544222312222344414455678*************975544443123336999999544444566567788999999*******************************************************999877777777776662 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0028       9.5       8      53 ..       7      67 ..       4      78 .. 0.65
   2 !    9.6   0.2   0.00023      0.79      20      43 ..     188     210 ..     120     220 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0028
    PF09716.5  8 yffafLlavnlLapgvssnsveakkag...............tskalkkiddelekkkknk 53
                 ++fa++l+v +     +++ +e  + +               + k+ ++i +e+ +k k++
  MMETSP0890-20130614|28290_1  7 LLFAVFLVVEFVHEVECRSAKEWAALSekeleemwkqgdeedELKSEADIYQEMIEKRKKN 67
                 6899999999995555555555444444456666666666555588888888888885555 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00023
    PF09716.5  20 apgvssnsveakkagtskalkkid 43 
                  +  +s ns+++k+++ +k+ kk +
  MMETSP0890-20130614|28290_1 188 VEVSSHNSINKKENK-KKKKKKTQ 210
                  333445555555551.22222222 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     8e-05      0.27      74     121 ..      36      83 ..      21      86 .. 0.86
   2 ?   -2.5   0.0      0.64   2.2e+03      47      69 ..     122     144 ..     112     170 .. 0.59
   3 ?   -3.6   0.2       1.4   4.6e+03      72     116 ..     200     203 ..     186     217 .. 0.42

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8e-05
                  HHHH---EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCCS-TT- CS
   PF02826.14  74 eeeelgaevvsleellaesDvvslhlpltpetrhlinaeelakmkkga 121
                  e+ee+  + ++ +el +e+D+   ++   +++ ++i+ ++++kmk++ 
  MMETSP0890-20130614|28290_1  36 ELEEMWKQGDEEDELKSEADIYQEMIEKRKKNGGMIDISQIEKMKPDQ 83 
                  455666677899*********************************986 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.64
                  ---HHHHHHHH---EEEE--SS- CS
   PF02826.14  47 IGqavakrlkafgmkvlaydrsk 69 
                  I+ ++a +l+  g+k+  y   +
  MMETSP0890-20130614|28290_1 122 IAAKFAALLQTGGLKINSYRIDP 144
                  55555556665555555554443 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.4
                  ..HHHH---EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCC CS
   PF02826.14  72 eeeeeelgaevvsleellaesDvvslhlpltpetrhlinaeelak 116
                  e+                                         +k
  MMETSP0890-20130614|28290_1 200 EN-----------------------------------------KK 203
                  22.........................................11 PP

>> PF08586.5  RSC complex, Rsc14/Ldb7 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4    0.0002      0.69      14      75 ..      25      80 ..      16      91 .. 0.82
   2 ?    1.3   1.2      0.12   4.2e+02      35      55 ..     191     211 ..     171     220 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0002
    PF08586.5 14 ekseqvslskeeLreLvkeeederkdreleelkkkdkekgkrvavhgyLgGkvslkeaeeaa 75
                  + e  +ls++eL+e+ k++++e++ + + + +++  ek+k+       gG ++++++e+++
  MMETSP0890-20130614|28290_1 25 SAKEWAALSEKELEEMWKQGDEEDELKSEADIYQEMIEKRKKN------GGMIDISQIEKMK 80
                 55666789*****************99999****999999987......8888888888776 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.12
    PF08586.5  35 derkdreleelkkkdkekgkr 55 
                   ++++++++e+kkk+k+k+++
  MMETSP0890-20130614|28290_1 191 SSHNSINKKENKKKKKKKTQQ 211
                  333333334444433333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1928  (0.141018); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.67
# Mc/sec: 794.02
//
Query:       MMETSP0890-20130614|28304_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.2   7.3    1.3e-08   34.2   5.1    2.1  2  PF05739.14 SNARE domain
  ------ inclusion threshold ------
        0.1   11.3   0.9       0.15   10.7   0.6    1.2  1  PF10797.4  Protein of unknown function
       0.29   10.9   3.2       0.23   11.2   0.9    1.9  2  PF06771.6  Viral Desmoplakin N-terminus
        2.8    7.9  11.5        1.4    8.9   3.8    2.8  2  PF06497.6  Protein of unknown function (DUF1098)
        6.2    6.5  11.4        9.9    5.8   2.8    3.1  3  PF07889.7  Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.3   6.4e+03       4      14 ..     191     201 ..     188     202 .. 0.75
   2 !   34.2   5.1   4.9e-12   1.3e-08       5      62 ..     326     383 ..     322     384 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.3
                  HHHHHHHCCHH CS
   PF05739.14   4 eeleelessig 14 
                  ++++e+ + i+
  MMETSP0890-20130614|28304_1 191 RQVQEIAAIIT 201
                  68888888886 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 4.9e-12
                  HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF05739.14   5 eleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalryq 62 
                  +++++++si  ++ l++d+++ ve Q  ++d+I++n  +a+  ve+a ++l+ a+  q
  MMETSP0890-20130614|28304_1 326 AVKDVHDSILAINALMKDLANQVEVQQVMIDSIEQNTTEAHVAVENAAEQLQEAVDIQ 383
                  799***************************************************9877 PP

>> PF10797.4  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   5.6e-05      0.15     204     272 ..     288     358 ..     273     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.6e-05
    PF10797.4 204 ekleeeeenaslaslfeervkRikknllllaivgaLiaaaaslk..ilagdevslallakgkineaalaal 272
                     ++++e+++ + lfe rv+ i +n+++  i +   aa+ +++  ila +++   l ++ +++++++ ++
  MMETSP0890-20130614|28304_1 288 ASSSKKQEQNEDTHLFEGRVRTISENTVVTRIESETTAAVKDVHdsILAINALMKDLANQVEVQQVMIDSI 358
                  22344455788899**********************99998774449****************99999776 PP

>> PF06771.6  Viral Desmoplakin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         3   8.3e+03      29      46 ..     183     200 ..     179     206 .. 0.66
   2 ?   11.2   0.9   8.5e-05      0.23      12      72 ..     303     363 ..     287     371 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3
    PF06771.6  29 lsstedvlerirsiilly 46 
                  +++ +++ +++++i +++
  MMETSP0890-20130614|28304_1 183 RNEMNEFARQVQEIAAII 200
                  566777777777776554 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 8.5e-05
    PF06771.6  12 vknLlkTintmskriktlsstedvlerirsiillyrPslkkrlselsveeLlieaLkknak 72 
                  ++  ++Ti +    ++ +s+t+ + + +++ il+++  +k+ + +++v++++i ++++n++
  MMETSP0890-20130614|28304_1 303 FEGRVRTISENTVVTRIESETTAAVKDVHDSILAINALMKDLANQVEVQQVMIDSIEQNTT 363
                  566689***********************************9999**********999875 PP

>> PF06497.6  Protein of unknown function (DUF1098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.12   3.3e+02      54      84 ..     188     218 ..     132     220 .. 0.77
   2 ?    8.9   3.8   0.00051       1.4      10      92 ..     294     384 ..     283     386 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.12
    PF06497.6  54 kqsraakkllkaieddedsiklgtddavnvL 84 
                  +  r  +++   i ++ d+i l++  av  L
  MMETSP0890-20130614|28304_1 188 EFARQVQEIAAIITNRLDDIPLNRAAAVHKL 218
                  4456667777778888888888888887655 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00051
    PF06497.6  10 ardnssdd..........inaeellqaLneaqtvarlilnDtsenKresLkkLskqsraakkllkaieddedsiklgtddavnvLellsdiyd 92 
                  +++n+  d          i  +++++ + + +t+a   + D+    ++ +k+L++q  + + ++++ie+++++  + +++a + L+   di +
  MMETSP0890-20130614|28304_1 294 QEQNE--DthlfegrvrtISENTVVTRIESETTAAVKDVHDSILAINALMKDLANQVEVQQVMIDSIEQNTTEAHVAVENAAEQLQEAVDIQN 384
                  22222..124667788889999********999999999***99*9***************************************99998876 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.026        72      68     114 ..     157     202 ..     142     211 .. 0.80
   2 ?    1.9   0.1     0.058   1.6e+02      43      97 ..     195     253 ..     186     272 .. 0.73
   3 ?    5.8   2.8    0.0036       9.9      63     121 ..     320     378 ..     292     383 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.026
    PF07889.7  68 qridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvveg 114
                  +r+++l  k+++++ ++  +  +  e+r++++++ ++v+++  ++++
  MMETSP0890-20130614|28304_1 157 ERVQRLRYKIEAKSRLAG-TPLDSLEVRNEMNEFARQVQEIAAIITN 202
                  689999999999888875.5566678999999999999999988865 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.058
    PF07889.7  43 dAvasvtkqlekv....seavasakkhLsqridnlddkldeqkeiskeikeevteired 97 
                  +  a +t++l+++      av++ +++Ls+++  +   l +    ++++++ +++ ++ 
  MMETSP0890-20130614|28304_1 195 EIAAIITNRLDDIplnrAAAVHKLRRDLSKEVTLIAGILRALPTFIESTAQSIHHEEKA 253
                  55566777777763333467888899999999999888888888888888888765554 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0036
    PF07889.7  63 kkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskles 121
                    + ++ ++ + d++ + ++++k+ +++v + +  +++i+++  + + +ve+ +++l++
  MMETSP0890-20130614|28304_1 320 ESETTAAVKDVHDSILAINALMKDLANQVEVQQVMIDSIEQNTTEAHVAVENAAEQLQE 378
                  45677889999999999999999999999999999999*99999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1236  (0.0904037); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.83
# Mc/sec: 1134.66
//
Query:       MMETSP0890-20130614|28350_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   10.9   0.9        0.2   10.2   0.6    1.3  1  PF05602.7  Cleft lip and palate transmembrane protein 1 (CLPTM1)
        3.8    6.6  35.8          6    5.9  24.8    1.3  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF05602.7  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6     3e-05       0.2     162     279 ..     220     346 ..     203     351 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3e-05
    PF05602.7 162 eeeeeeeelkeeivsywkpnl..tlslvvdqt..svskaqlppalaeylrleesgaryyPilf..vnefwqlkehlveinetv.kelplti.elspl.slwklqllasmeesakeqaklGgskkead 279
                  ee+++ +  ++++++yw+ +l  ++s ++d+   s+++++l   ++++++l+++ +++yP+ f  v++   +++  + +n+ + +el  ++ e+++  ++++  ll+++++s +++a++ ++kke++
  MMETSP0890-20130614|28350_1 220 EEDDDAHVINNKWEQYWNGRLgaSFSYIDDTEidSYERQELVHRIKSFMKLQQNATKFYPSAFarVSNNNDVEQPAIDLNSITlEELRQKVpEYKSRaKRTRQLLLEEVDRSQANEAAARAKKKEIE 346
                  33333335899******9997447888999863379999*********************9983345666677888888886678888888556554145666667777777777777777777776 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  24.8   0.00088         6     135     324 ..     337     515 ..     309     529 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00088
                  HHHHH-----XXXXXXXXXXXXXXXX...................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX.....................................................XXXXXXXXXX CS
   PF04652.11 135 aariakalkegedpnpgppideeeeeeaesveeipdeqeaqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfp..spdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppv.qapsapakpslssakPtaqsass 324
                  aar +k ++e ++ ++   + ee   +ae  + +  e e+qe +++ + +++a+ +++++++ ++ +e+   d+++         + d+d ++ s+++++++ ++ p++   s d++++ n+++    a +  q++++++++ +Pp+++++++  s p++++++++pp+ q+p++ a       +P+a  + s
  MMETSP0890-20130614|28350_1 337 AARAKKKEIERRRKEEETRRIEERRIQAERQQRERRERERQERVQREQRERAAAMERQRQQPPPRLEEESDDDDMP------ALIDDDEDSEEDSDEDSDEDAHELPPLVaaSDDDTSEDNNAVRGQRAQQSRQRQQEAATPPTPPPQPQRQEAVS-PTQQQQRQQPPQrQQPPPRA-------QPNADDSDS 515
                  5566666666655555555444444433333333344446666666666666666665555555555555555555......23333333333444444444444444435344444444544444444433555666666666666554444444.45555555555403333333.......333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1952  (0.142774); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                       133  (0.00972791); expected 13.7 (0.001)
Passed Fwd filter:                        33  (0.00241369); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.68u 0.41s 00:00:02.09 Elapsed: 00:00:01.55
# Mc/sec: 820.95
//
Query:       MMETSP0890-20130614|28358_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   73.3   0.0    2.4e-20   72.4   0.0    1.4  1  PF08059.8  SEP domain
    6.1e-09   35.7   0.0      1e-08   34.9   0.0    1.3  1  PF00789.15 UBX domain


Domain annotation for each model (and alignments):
>> PF08059.8  SEP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   3.5e-24   2.4e-20       1      75 []      68     138 ..      68     138 .. 0.97

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 3.5e-24
    PF08059.8   1 ltlwknGFsvddGeLrsyddpenaefLesikkgevPsellkkdpkqevdvkvedkreedyvkpkkkykpFsGsGq 75 
                  +t+++nGF++ddG++rs++dp+n  fL+++ +g vP+el+++ +    d+++ d+r e y++   ++kpF G+Gq
  MMETSP0890-20130614|28358_1  68 ITMYRNGFTIDDGPFRSLEDPANLPFLRDVSRGLVPRELEQQGQ-GAFDLELVDRRAEMYTA---SFKPFTGQGQ 138
                  89***************************************985.9***************7...5********8 PP

>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.5e-12     1e-08       6      78 ..     175     246 ..     171     248 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.5e-12
                  EEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTSEEEEESSSTEEETSCCSBCCCHSTSSSCEEEE CS
   PF00789.15   6 vcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeepFkLltsfPrrlltksdktlseagllpnstlvl 78 
                   +++q+Rl+ G r++   ++ +tv ++   v+s++   ++pF Ll  +P ++l++++ ++++a +l n++l++
  MMETSP0890-20130614|28358_1 175 STQIQVRLATGGRIRLSLNHIHTVADIELMVRSQAGPTDRPFYLLAGYPPKPLSDKQISITDA-GLLNASLTQ 246
                  699************************************************************.888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.83
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|28362_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   14.9  22.0      0.046   13.1  13.9    2.3  2  PF08598.6 Sds3-like
        8.6    4.5   6.1         10    4.2   4.2    1.2  1  PF04632.7 Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> PF08598.6  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.2   1.3e+03     151     177 ..      13      39 ..       3      48 .. 0.44
   2 ?   13.1  13.9   6.7e-06     0.046      22     175 ..      44     172 ..      28     198 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.2
    PF08598.6 151 klrereelpnlvakrkkknkesdrlss 177
                  ++r   +l+++ +   k   e ++l++
  MMETSP0890-20130614|28362_1  13 HHRSTSNLHEMSEVVAKEDIEAKELER 39 
                  233333334444334444444444444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 6.7e-06
    PF08598.6  22 YrdrLkklqtdlallqqgeneeflrelndleeerdleltrlrldeeyklerieseyaeeiekakqeyeklvkllkerlinkleekikrLeeeresldiaessalllhprkfslanpaspggthskratrklrereelpnlvakrkkknkesdrl 175
                  Y   +++l+ + +++  ge++e+ r+ ++l++ ++++ + ++   + + +  e+  + e  +a+++ ek +kl +e+l++   +k k Le  re  +  ++ a ++                     tr+lr + +  n   +r+  ++ ++r 
  MMETSP0890-20130614|28362_1  44 YDIAIEALDRERETVLSGEHPEYKRRCRRLQQTKEERQRNAKDTLQAEFKTLEKLLQLENAAAEKQMEKGMKLAREKLMD---QKAKNLEARREGKEEDAA-ARMN---------------------TRSLRSKGTGLNDDGERSTSRRTTSRR 172
                  666788999*********************************************************************98...578888887777776633.4444.....................233333333222222222222222222 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.2    0.0015        10     536     632 ..      71     168 ..      20     174 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0015
    PF04632.7 536 aprlaaapaasraalrdalaalrvgravlrLrralara.lpaparaaidavlaala..fraraaarkerrlaapaalldaldaalaalaadpaaaalrra 632
                   ++ +++++++r a + + a++ + + +l+L  a+a++ + +    a ++++++ a  ++ar+++++e +  a++  +++l++    l++d+++++ rr+
  MMETSP0890-20130614|28362_1  71 RRLQQTKEERQRNAKDTLQAEFKTLEKLLQLENAAAEKqMEKGMKLAREKLMDQKAknLEARREGKEEDA--AARMNTRSLRSKGTGLNDDGERSTSRRT 168
                  4445589999999********************9999998899999999999999955555555544444..5555677788777777777777775555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1430  (0.104593); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.79
# Mc/sec: 664.31
//
Query:       MMETSP0890-20130614|28373_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   66.2   0.0    2.4e-18   65.9   0.0    1.1  1  PF04157.11 EAP30/Vps36 family
  ------ inclusion threshold ------
      0.056   13.0   0.0      0.069   12.7   0.0    1.3  1  PF07481.6  Domain of Unknown Function (DUF1521)


Domain annotation for each model (and alignments):
>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   3.6e-22   2.4e-18      88     223 .]       2     132 ..       1     132 [. 0.93

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 3.6e-22
                  HHHHHHHHHHHHHHHHHHTTTTSS-EEEHHHHHHCCCHCT....T--HHHHHHHHHHGGGGT-T-EEEE-SSS-EEEEESS.CH--HHHHHHHHHT..TT---B-HHHHHHHHS......B-SHHHHHHHHHHHH---EEEE CS
   PF04157.11  88 lgdFyyeLAveiveiclkelkengglvpLqelfalvnraregselvspeDllkAlekleklglgiklvklgsgvlvvqttpdselsadqskileyvlseqeggvseselaekln......wsigraeeaLeklvkeGllwiD 223
                  +gdFyyeL+v+i+e+c+++++ nggl++L+e+ + +        +++ +D+++A+ kl  lg+g++++  + g++++ ++p  el+ d+   l+++  + +g+v++  l+++l+       s  ra ++L++l k+G +wiD
  MMETSP0890-20130614|28373_1   2 VGDFYYELGVKIIELCTATRQVNGGLMSLDEVESQLGDP-----NITRDDIKRAVAKLNILGNGLRII--DDGRTLL-SVP-VELNRDHIIALKIA--RSSGFVTVGTLSAHLStipnerRSDPRATAVLDQLTKDGFAWID 132
                  69******************************9988775.....6*******************9996..5455555.888.7889**********..****************999999999******************9 PP

>> PF07481.6  Domain of Unknown Function (DUF1521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     1e-05     0.069      93     148 ..      87     142 ..      31     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
    PF07481.6  93 itkGdnalvveGlsdkkdgknnlkvtqsnaGrtldaltsdGaqlieeqtgkGWvde 148
                  i++    + v  ls +   + n +  +  a   ld+lt+dG+  i++q g G ++e
  MMETSP0890-20130614|28373_1  87 IARSSGFVTVGTLSAHLSTIPNERRSDPRATAVLDQLTKDGFAWIDDQGGPGVREE 142
                  445555566666777777777777777788999****************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 580.94
//
Query:       MMETSP0890-20130614|28371_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-33  113.8   0.0      9e-33  113.5   0.0    1.0  1  PF01263.15 Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> PF01263.15  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   6.5e-37     9e-33       3     299 ..      34     287 ..      32     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 6.5e-37
                  EEEETTTEEEEEEET---EEEEEEETT.SCEBSB---CSHHHHHHSCG-HHEETSC-SEEEGGEEE----EEECCECBTTTEEETTBGGGSB-EEEEEEECTEEEEEEEEEECTTHC.STS-EEEEEEEEEETTEEEEEEEEEEESC..SEEEEBEEE--EEETSCC-CTGGEEEEEE.EEEEEECTTS-EE-EEEECTTECTCGSSCCCCCSSCTEEEEEEEESSSSEEEEEECTTTEEEEEEEECTSSEEEEEE-TTS-CEECCEEECCETTCECCCCCTTTTT-EEECTT-EEEEEEE CS
   PF01263.15   3 itlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdayfGatlgrvanRianGeFeldGkpyqlpkneegknplHGgargrkWeveekkeddgvtvslvlkpdgeeg.fpgdlevrvtytLnednelkieyeatndg..kptpfnltnHtYFnlsgesidehelqiea.deylevdeeliptgeikdvkgtpfdfrqpkaigedlkglDhayvlkkklkavikdpdkksgiklevsttepalvvytgnflkkylsreglaletqflpdepnhpefpsiilkpGesysakts 299
                  + lk++ g sak+  yGA ++s+ + +  ++e++   +d          ++ +g++++    G     G  +++p++++g+ ++HG+ar+ +W++  +  d++vt++l+  +d++   + + + ++  +++++d+ l+ ++ ++n g   ++ f++++H+YF +s    ++  ++i++  ++  +++      + ++   t +  +++k+i     ++D++y++ +  ++v +d  k++++++++   + ++v++++ +++         ++ +f+++e    +   i l+pGes+   +s
  MMETSP0890-20130614|28371_1  34 VLLKHPSGASAKVFPYGADVTSYIDAS--GTEWIAVRPD----------AKMDGSKPIS---G-----GLSHCFPQFGPGEIQQHGFARNLDWTIIGTG-DSSVTMELKA-NDETRAmWDYPFLCTFEVSVTADS-LDTKLLVKNIGedAAFDFQAALHSYFDIS----SIGSITISGsFDGSSYLD------KTANPPATCT--EARKEISIAE-EYDRVYKGVN--DPVLIDSGKGKKLQISNKAGYLDTVLWSPYGND-------AMGYEKFVCVESVAFD--PIHLEPGESWLGDMS 287
                  6799***********************..77********..........6*********...8.....*****************************99.3555555555.4444448***************99.88888888888889***************....999999999744555555......2345666666..6777777765.8********9..*****************************6666.......4467899999987666..5*********87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:01.13
# Mc/sec: 615.91
//
Query:       MMETSP0890-20130614|28388_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   42.9  30.2      0.017   15.0   0.1    9.9 10  PF13516.1  Leucine Rich repeat
    8.4e-06   25.0   6.7       0.79    9.8   0.0    6.7  7  PF00560.28 Leucine Rich Repeat
    1.3e-05   24.6  13.3      0.099   12.1   0.1    5.5  6  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.25   11.5  12.5         46    4.7   0.0    6.7  7  PF13504.1  Leucine rich repeat
        1.2    8.7  16.1        2.2    8.0   0.4    5.7  5  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0086        23       3      22 ..      93     112 ..      91     113 .. 0.86
   2 !    5.6   0.1    0.0068        19       2      24 .]     120     142 ..     119     142 .. 0.91
   3 ?    4.9   0.1     0.012        31       1      24 []     149     172 ..     149     172 .. 0.85
   4 ?   -1.1   0.0      0.96   2.6e+03       2      21 ..     178     197 ..     177     200 .. 0.76
   5 !   15.0   0.1   6.3e-06     0.017       1      24 []     205     228 ..     205     228 .. 0.95
   6 !   10.1   0.0   0.00023      0.63       4      23 ..     237     256 ..     235     260 .. 0.87
   7 !   10.6   0.1   0.00016      0.44       2      22 ..     269     289 ..     268     291 .. 0.87
   8 ?    1.8   0.1      0.11   3.1e+02       3      23 ..     298     318 ..     297     323 .. 0.79
   9 ?    0.8   0.2      0.23   6.4e+02       2      15 ..     327     340 ..     327     345 .. 0.86
  10 ?    1.8   0.2      0.11   3.1e+02       1      14 [.     356     369 ..     356     381 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0086
    PF13516.1   3 nLtsLdLsnNqigdeGlsaL 22 
                  n+   ++s+N +g++G+ aL
  MMETSP0890-20130614|28388_1  93 NIICVNVSDNALGQKGMDAL 112
                  666779**********9987 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0068
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLan 24 
                  ++L+sL + nN+ +   ++ L++
  MMETSP0890-20130614|28388_1 120 NKLQSLKVCNNGMSAAAAKQLCE 142
                  68*************99999985 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.012
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                  ++nL  +++ nN  gdeG+ ++++
  MMETSP0890-20130614|28388_1 149 NTNLNIFHFHNNMSGDEGALYISK 172
                  57888888999999*****99985 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.96
    PF13516.1   2 knLtsLdLsnNqigdeGlsa 21 
                  ++L +L +s++  g  G   
  MMETSP0890-20130614|28388_1 178 PKLIDLKFSGTRAGRPGSLL 197
                  78999****99887777655 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 6.3e-06
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaLan 24 
                  l++L+ LdL +N +g +G+ aLa+
  MMETSP0890-20130614|28388_1 205 LSSLQRLDLIDNTLGEDGADALAQ 228
                  689*******************97 PP

  == domain 6    score: 10.1 bits;  conditional E-value: 0.00023
    PF13516.1   4 LtsLdLsnNqigdeGlsaLa 23 
                  L++LdL ++ +g++G + +a
  MMETSP0890-20130614|28388_1 237 LRYLDLRDCALGNDGWQLIA 256
                  99*************77665 PP

  == domain 7    score: 10.6 bits;  conditional E-value: 0.00016
    PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                  + L++Ld+s+N++  e + +L
  MMETSP0890-20130614|28388_1 269 CLLEHLDISGNDLQAEACASL 289
                  679**********99998877 PP

  == domain 8    score: 1.8 bits;  conditional E-value: 0.11
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  +L+ L L  N+i  eGl+ ++
  MMETSP0890-20130614|28388_1 298 KLSFLALEENDIQLEGLQIIC 318
                  68889999********96555 PP

  == domain 9    score: 0.8 bits;  conditional E-value: 0.23
    PF13516.1   2 knLtsLdLsnNqig 15 
                  +nL +L+L  N+i 
  MMETSP0890-20130614|28388_1 327 NNLATLNLATNDIN 340
                  6999****999985 PP

  == domain 10    score: 1.8 bits;  conditional E-value: 0.11
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  ++n + L++ +N+i
  MMETSP0890-20130614|28388_1 356 CPNFSLLNIDGNGI 369
                  899999******99 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.3   6.3e+03       3      13 ..      95     105 ..      93     120 .. 0.68
   2 ?   -0.3   0.0       0.6   1.6e+03       1      13 [.     121     133 ..     121     147 .. 0.84
   3 ?    3.0   0.0     0.049   1.4e+02       1      13 [.     207     219 ..     207     232 .. 0.82
   4 !    6.1   0.0     0.005        14       2      14 ..     237     249 ..     236     264 .. 0.78
   5 !    9.8   0.0   0.00029      0.79       2      16 ..     271     290 ..     270     296 .. 0.79
   6 ?   -0.1   0.0      0.52   1.4e+03       1      13 [.     328     340 ..     328     349 .. 0.80
   7 ?    1.0   0.2      0.22   6.1e+02       5      22 .]     362     380 ..     358     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.3
                  SEEEETSSBCB CS
   PF00560.28   3 eeLdLsgNnlt 13 
                     ++s+N l 
  MMETSP0890-20130614|28388_1  95 ICVNVSDNALG 105
                  56789999876 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.6
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  +L++L + +N ++
  MMETSP0890-20130614|28388_1 121 KLQSLKVCNNGMS 133
                  699******9876 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.049
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  +L++LdL +N l 
  MMETSP0890-20130614|28388_1 207 SLQRLDLIDNTLG 219
                  79*******9886 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.005
                  ESEEEETSSBCBC CS
   PF00560.28   2 LeeLdLsgNnlts 14 
                  L++LdL+++ l +
  MMETSP0890-20130614|28388_1 237 LRYLDLRDCALGN 249
                  9********8874 PP

  == domain 5    score: 9.8 bits;  conditional E-value: 0.00029
                  ESEEEETSSBCB.C....HH CS
   PF00560.28   2 LeeLdLsgNnlt.s....lp 16 
                  Le+Ld+sgN l+ +    lp
  MMETSP0890-20130614|28388_1 271 LEHLDISGNDLQaEacasLP 290
                  9**********955666665 PP

  == domain 6    score: -0.1 bits;  conditional E-value: 0.52
                  TESEEEETSSBCB CS
   PF00560.28   1 nLeeLdLsgNnlt 13 
                  nL +L+L  N + 
  MMETSP0890-20130614|28388_1 328 NLATLNLATNDIN 340
                  7999***999887 PP

  == domain 7    score: 1.0 bits;  conditional E-value: 0.22
                  EEETSSBCB.C.HHHHHHHH CS
   PF00560.28   5 LdLsgNnlt.s.lppslsnL 22 
                  L+++gN +  s lp  ls+L
  MMETSP0890-20130614|28388_1 362 LNIDGNGIAqSvLPQ-LSSL 380
                  9******99447776.7765 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.2   5.5e+02      24      36 ..     120     132 ..      97     141 .. 0.75
   2 !    5.1   0.2    0.0057        16      20      36 ..     202     218 ..     195     234 .. 0.76
   3 !   12.1   0.1   3.6e-05     0.099       3      37 ..     237     282 ..     237     292 .. 0.74
   4 !    9.6   0.0   0.00023      0.64       3      37 ..     271     310 ..     269     321 .. 0.86
   5 ?    2.9   0.6     0.028        76      21      37 ..     324     340 ..     297     349 .. 0.67
   6 !    9.6   0.8   0.00022      0.61       2      42 ..     328     377 ..     326     381 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.2
    PF12799.2  24 pnLktLnLsnNpi 36 
                  ++L++L + nN  
  MMETSP0890-20130614|28388_1 120 NKLQSLKVCNNGM 132
                  4677777777765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0057
    PF12799.2  20 lanLpnLktLnLsnNpi 36 
                  l nL++L+ L+L  N +
  MMETSP0890-20130614|28388_1 202 LLNLSSLQRLDLIDNTL 218
                  77888888888877765 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 3.6e-05
    PF12799.2   3 LevLdLsnN.......nI..kdlppelanLpn...LktLnLsnNpis 37 
                  L++LdL+++       ++  + l+p ++  +n   L++L++s+N ++
  MMETSP0890-20130614|28388_1 237 LRYLDLRDCalgndgwQLiaTALSP-ISEKQNnclLEHLDISGNDLQ 282
                  89*******4444444223346***.*87666688*********986 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00023
    PF12799.2   3 LevLdLsnNnIkd.....lppelanLpnLktLnLsnNpis 37 
                  Le+Ld+s+N ++      lp+++   ++L  L L+ N i+
  MMETSP0890-20130614|28388_1 271 LEHLDISGNDLQAeacasLPAVFRAQTKLSFLALEENDIQ 310
                  9********998445555***999999********99885 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.028
    PF12799.2  21 anLpnLktLnLsnNpis 37 
                  a+ +nL tLnL+ N i 
  MMETSP0890-20130614|28388_1 324 AKPNNLATLNLATNDIN 340
                  46789999999999884 PP

  == domain 6    score: 9.6 bits;  conditional E-value: 0.00022
    PF12799.2   2 nLevLdLsnNnIkd......lppel.anLpnLktLnLsnNpisd..lsaL 42 
                  nL +L+L+ N I        l ++l + +pn  +Ln+++N i    l++L
  MMETSP0890-20130614|28388_1 328 NLATLNLATNDINAalsvirLAATLrSYCPNFSLLNIDGNGIAQsvLPQL 377
                  8999******887443333366778678**************74344555 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   3.4e+03       2      10 ..     121     129 ..     115     133 .. 0.59
   2 ?    2.9   0.0     0.069   1.9e+02       1      14 [.     206     219 ..     206     222 .. 0.86
   3 ?    4.7   0.0     0.017        46       3      13 ..     237     247 ..     235     254 .. 0.88
   4 ?    4.6   0.0     0.019        51       3      14 ..     271     282 ..     269     290 .. 0.81
   5 ?   -1.0   0.0       1.3   3.7e+03       1      13 [.     297     309 ..     297     315 .. 0.73
   6 ?    0.6   0.1      0.38     1e+03       2      14 ..     328     340 ..     327     346 .. 0.85
   7 ?   -2.5   0.0       4.2   1.2e+04       6      15 ..     362     371 ..     361     375 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.2
    PF13504.1   2 nLkeLdLsg 10 
                  +L+ L + +
  MMETSP0890-20130614|28388_1 121 KLQSLKVCN 129
                  455555555 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.069
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++L++LdL +n L 
  MMETSP0890-20130614|28388_1 206 SSLQRLDLIDNTLG 219
                  58******999875 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.017
    PF13504.1   3 LkeLdLsgnrL 13 
                  L++LdL+++ L
  MMETSP0890-20130614|28388_1 237 LRYLDLRDCAL 247
                  9********87 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.019
    PF13504.1   3 LkeLdLsgnrLt 14 
                  L+ Ld+sgn+L+
  MMETSP0890-20130614|28388_1 271 LEHLDISGNDLQ 282
                  899******996 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 1.3
    PF13504.1   1 pnLkeLdLsgnrL 13 
                  ++L +L L  n++
  MMETSP0890-20130614|28388_1 297 TKLSFLALEENDI 309
                  5799999999973 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.38
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  nL +L+L+ n+++
  MMETSP0890-20130614|28388_1 328 NLATLNLATNDIN 340
                  899****999875 PP

  == domain 7    score: -2.5 bits;  conditional E-value: 4.2
    PF13504.1   6 LdLsgnrLts 15 
                  L++ gn++ +
  MMETSP0890-20130614|28388_1 362 LNIDGNGIAQ 371
                  8999999865 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.21   5.7e+02      24      40 ..     109     125 ..      92     134 .. 0.64
   2 ?    8.0   0.4   0.00079       2.2      20      58 ..     201     244 ..     196     247 .. 0.58
   3 ?    4.7   0.1    0.0084        23      26      38 ..     270     282 ..     259     309 .. 0.57
   4 ?   -0.1   1.1      0.27   7.3e+02      21      38 ..     353     371 ..     327     393 .. 0.53
   5 ?   -0.9   0.1      0.47   1.3e+03       5      31 ..     361     390 ..     357     411 .. 0.52

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.21
    PF13855.1  24 lsnLkvLdLsgnnlksi 40 
                  ++ L  L   +n+l+s+
  MMETSP0890-20130614|28388_1 109 MDALLPLFVASNKLQSL 125
                  55555555555555544 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00079
    PF13855.1  20 aFkglsnLkvLdLsgnnlksispeafkgL.....psLreLnLsg 58 
                  ++ +ls+L+ LdL +n l +  ++a++++     p Lr+L+L++
  MMETSP0890-20130614|28388_1 201 SLLNLSSLQRLDLIDNTLGEDGADALAQFiessqPPLRYLDLRD 244
                  66778888888888887776666665554111113355555554 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0084
    PF13855.1  26 nLkvLdLsgnnlk 38 
                   L++Ld+sgn l+
  MMETSP0890-20130614|28388_1 270 LLEHLDISGNDLQ 282
                  5778888866664 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.27
    PF13855.1  21 FkglsnLkvLdLsgnnl.k 38 
                   ++++n   L++ gn + +
  MMETSP0890-20130614|28388_1 353 RSYCPNFSLLNIDGNGIaQ 371
                  3356666666666666654 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.47
    PF13855.1   5 eLdLsnNrlk..vipd.gaFkglsnLkvLd 31 
                   L++++N +   v+p+ +++ g ++L +Ld
  MMETSP0890-20130614|28388_1 361 LLNIDGNGIAqsVLPQlSSLLGEEKLASLD 390
                  466666633322334444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.93
# Mc/sec: 1077.07
//
Query:       MMETSP0890-20130614|28402_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-25   89.6   0.0    1.9e-25   89.0   0.0    1.3  1  PF01687.12 Riboflavin kinase
    2.4e-11   43.3   0.0    1.1e-10   41.1   0.0    1.9  1  PF13847.1  Methyltransferase domain
    1.2e-10   41.2   0.0    1.8e-10   40.6   0.0    1.2  1  PF13489.1  Methyltransferase domain
    1.3e-10   41.4   0.1    7.4e-10   39.0   0.1    2.1  1  PF08241.7  Methyltransferase domain
    2.3e-09   37.6   0.0    4.3e-09   36.8   0.0    1.4  1  PF12847.2  Methyltransferase domain
    3.2e-08   33.8   0.0      6e-08   32.9   0.0    1.5  1  PF08242.7  Methyltransferase domain
    7.7e-07   28.3   0.1    1.2e-06   27.6   0.1    1.3  1  PF01209.13 ubiE/COQ5 methyltransferase family
    5.5e-06   26.2   0.0    1.3e-05   25.1   0.0    1.6  1  PF13659.1  Methyltransferase domain
      2e-05   24.7   0.0    5.5e-05   23.3   0.0    1.8  1  PF13649.1  Methyltransferase domain
     0.0041   16.7   0.0     0.0069   15.9   0.0    1.3  1  PF13679.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.031   13.0   0.0       0.14   10.9   0.0    1.8  1  PF03291.11 mRNA capping enzyme
       0.11   11.7   0.0       0.27   10.4   0.0    1.6  1  PF05175.9  Methyltransferase small domain
       0.11   11.3   0.0       0.17   10.8   0.0    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> PF01687.12  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   1.8e-28   1.9e-25       2     124 ..     253     401 ..     252     402 .. 0.89

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 1.8e-28
                  -----EE---B------.--------EEB--..---------.--EEEEEE-..---EEE-EEE---------.---..-EEEEET.................T----------EEEEEEE-------SSHHHHHHHHHHHHHHHHHHH CS
   PF01687.12   2 lgrpykleGtvvkGkgr.grelgfPTaNlpl..ekaellpke.GvYavkvkv..desvlpgvvsiGvnptfkn.kkk..tvEvhil.................dfeedlygekvkvellkfiRpekkFdsleaLikqIkkDieearkll 124
                  l++p+ ++G+v +G+gr +r+lgfPTaNlp     + l +   GvY +++ v  d++ lp+v++ G+ ptf + +++  ++E+hi+                   ++++y++ +++ l++f Rpe+kF s+ +Li++Ik+D+++a+++l
  MMETSP0890-20130614|28402_1 253 LQKPLLVRGKVQRGYGRgSRKLGFPTANLPEnlFGSTLEDLPcGVYTCWAFVqgDPRPLPAVANCGISPTFAGmENPlkIIEAHIIqrpdppfliqaqtvaakAAAAEFYDKPMTLLLVGFQRPERKFPSFPQLINAIKTDVQNALAIL 401
                  678999***********99***********9875666666667****99888335669*************998655569*****************99988666779*************************************9887 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.1e-13   1.1e-10       3     112 ..      71     189 ..      69     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.1e-13
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle................esfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                  +++++lD+G GtG l+ +      ++a++vG+Dis+ ++++A++   +l  +++ F  gdi +++  ++                e fD+ ++n+ + ++ d+++ l ++ +v+k gg ++v++p 
  MMETSP0890-20130614|28402_1  71 QDLRILDVGIGTGNLAKRYP----KNARIVGVDISQSMLQVATK---CLDKNRTAFWLGDIADFSDFWQgeggqmfteneviergEMFDVAVFNACFGNVFDQKASLASAAQVVKGGGSVLVTHPL 189
                  7899********98776666....59******************...5555566688888888775455677777778888889**************************************9985 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.7e-13   1.8e-10      12     150 ..      55     236 ..      43     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 1.7e-13
    PF13489.1  12 llerllarlkpgg......rvLDiGcGtGillellaengfdvtgvDpspaaigk.......................akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas...............lasdeafakwdylvprgthisffsaeslke 150
                   l+r+++  ++ +      r+LD+G GtG+l++ + +++++++gvD+s  + +                         +    ++f e++  e ++ fd+ v++ ++++v d ++ l+++a+ +k gG +l++ p+                 ++ +++++ +d lv+++t  +f++++sl +
  MMETSP0890-20130614|28402_1  55 RLDRIVTAVNKEKsdgqdlRILDVGIGTGNLAKRY-PKNARIVGVDISQSMLQVatkcldknrtafwlgdiadfsdfWQGEGGQMFTENEVIERGEMFDVAVFNACFGNVFDQKASLASAAQVVKGGGSVLVTHPLGGnfvddlrrrdpsvvpHQLPRSLEAMDRLVENKTTPNFLRPQSLID 236
                  4444443322222234666**********999987.5669*******9998888999999999999999999999988888888888888888999***************************************987899999999999999889999999999999889999999999976 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1     7e-13   7.4e-10       1      94 [.      76     184 ..      76     185 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 7e-13
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle...........lvvadaeelpfedn......sfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                  LdvG Gtg+l++ + ++  ar++gvD+s++ml++a++ l++++             + ++   ++  e++       fDv v+++++  + d+++ l+ +a+v+k gG ++
  MMETSP0890-20130614|28402_1  76 LDVGIGTGNLAKRYPKN--ARIVGVDISQSMLQVATKCLDKNRTAfwlgdiadfsdFWQGEGGQMFTENEviergeMFDVAVFNACFGNVFDQKASLASAAQVVKGGGSVL 184
                  8****************..***********************99988888888888777776555333324444559*******************************986 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   4.1e-12   4.3e-09       2     111 ..      72     187 ..      71     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 4.1e-12
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.................fDavllkgltldallaldeprrvlealpkllkpggrlvies 111
                  + rilD+G GtG+l   + r  ++a++vgvD+s+ +l++a + +      +r ++  gd+   +++++                  fD+++ +  +++++++    ++ l+++++ +k gg +++++
  MMETSP0890-20130614|28402_1  72 DLRILDVGIGTGNL---AKRYPKNARIVGVDISQSMLQVATKCL----DKNRTAFWLGDIADFSDFWQGeggqmfteneviergemFDVAVFNA-CFGNVFDQ---KASLASAAQVVKGGGSVLVTH 187
                  579*********99...444447*********************....669999***9994444444446899*******************99.88888888...888**********99988876 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   5.7e-11     6e-08       1      98 [.      76     182 ..      76     183 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 5.7e-11
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.............ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  L++G GtG+l+++  ++   ++++gvDis+s+++ a + l k++   +   ++ + +++ + +g             + fDv+v + ++ ++ d +++l+++++++k gG 
  MMETSP0890-20130614|28402_1  76 LDVGIGTGNLAKRYPKN---ARIVGVDISQSMLQVATKCLDKNRT-AFWLGDIADFSDFWQGEGgqmfteneviergEMFDVAVFNACFGNVFDQKASLASAAQVVKGGGS 182
                  8*************777...*************666666666664.4444444444444444447******************************************9995 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   1.2e-09   1.2e-06      38     151 ..      62     185 ..      22     188 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.2e-09
   PF01209.13  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki........nieflqanaeeLpfed......dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                   v+k +++ +  ++lDv  Gtg+la +      ++ ++v++Di+++mL+v+ k l ++ +           +f q+++ ++  e+      + fDv      + nv D++ +L +a +v+k GG ++v
  MMETSP0890-20130614|28402_1  62 AVNKEKSDGQDLRILDVGIGTGNLAKRYP----KNARIVGVDISQSMLQVATKCLDKNRTAfwlgdiadFSDFWQGEGGQMFTENeviergEMFDVAVFNACFGNVFDQKASLASAAQVVKGGGSVLV 185
                  3455555556669*********9876655....56689**************999776655568954433479999987664433122133789**99999999*********************987 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.2e-08   1.3e-05       2     116 ..      73     188 ..      72     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.2e-08
    PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdl.................aellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvlivp 116
                  +r+ld+g G+G+++    +++  +++gv+++   +++a + l++++      +  gd++d+                     r++ fd+ v+n  +g+          + +a l+ aa+++k gG++++ +p
  MMETSP0890-20130614|28402_1  73 LRILDVGIGTGNLAKRYPKNA--RIVGVDISQSMLQVATKCLDKNRT----AFWLGDIADFsdfwqgeggqmftenevI--ERGEMFDVAVFNACFGNVF--------DQKASLASAAQVVKGGGSVLVTHP 188
                  79***********99888865..******************998855....6899999999666777776666665431..35567***********764........345679999999999999998775 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   5.2e-08   5.5e-05       1     101 []      75     181 ..      75     181 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 5.2e-08
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralp.................feegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  ild+G G+G     l+++++k+  +r++gvDis+ +l+ a + l+++  ++ f  +d+ +++                 ++++ fd+ v+  + +      +++a l+++a+v+k gG
  MMETSP0890-20130614|28402_1  75 ILDVGIGTG----NLAKRYPKN--ARIVGVDISQSMLQVATKCLDKN--RTAFWLGDIADFSdfwqgeggqmfteneviERGEMFDVAVFNAC-FGN--VFDQKASLASAAQVVKGGG 181
                  89******9....555555555..9**************99999544..6777777776664333333333333344446999*******777.665..3346777899999999666 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0069       6      75 ..      53     114 ..      50     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.6e-06
    PF13679.1   6 veklaelveklvkeaakeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaek 75 
                  ve+l ++v ++ ke +++ ++l+++DvG G g La++  +       + ++vg+d+++++ + a++  +k
  MMETSP0890-20130614|28402_1  53 VERLDRIVTAVNKE-KSDGQDLRILDVGIGTGNLAKRYPK-------NARIVGVDISQSMLQVATKCLDK 114
                  67777788886666.89999***************99888.......899**********9999887655 PP

>> PF03291.11  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.14      53     216 ..      61     216 ..      56     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
   PF03291.11  53 eyasklfaeknkrkvLdldcGkGgDLeKyekggIsklvgtDidessieeaqeRYkklnsrskskkykfdfeaefitsdsfvesvrevfedqekkFdivswQfaiHYsFeseekaktilnnlaellasGgkviiTtpdgdkiikkLeakkkevekkelgnsvyki 216
                   +++k + + ++ ++Ld+++G G  L K ++ + +++vg+Di++s ++ a +   k +       + +df+  f  ++  +   ++ + +    Fd+     ++   F+  +ka   l+ +a++ + Gg v++T p g   +  L+++   v  ++l+ s+  +
  MMETSP0890-20130614|28402_1  61 TAVNKEKSDGQDLRILDVGIGTGN-LAK-RYPKNARIVGVDISQSMLQVATKCLDKNRTAFWLGDI-ADFSD-FWQGEGGQMFTENEVIERGEMFDVAVFNACFGNVFD--QKAS--LASAAQVVKGGGSVLVTHPLGGNFVDDLRRRDPSVVPHQLPRSLEAM 216
                  56788888889**********986.666.4555689*********999999998555555555555.67765.445555555554444444588999888888777775..5666..88999999999999999998777779999988777777777777666 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.27      32      80 ..      72     117 ..      57     127 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
                  -----B-------HHHHHHHH-TT--.--EEESBHHHHHHHHHHHHH--- CS
    PF05175.9  32 agkvlDlGcGaGvlgaalakespele.vtlvDinarAvesakanleankl 80 
                  + ++lD+G G+G l+    k++p+++ ++ vDi+++ +++a + l++n+ 
  MMETSP0890-20130614|28402_1  72 DLRILDVGIGTGNLA----KRYPKNArIVGVDISQSMLQVATKCLDKNRT 117
                  3459********875....555554449****************999986 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.17      65     109 ..      74     116 ..      19     152 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00016
                  EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS- CS
   PF02353.15  65 tlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeld 109
                  ++Ld+G G G+l++r  ++  +++vg+ +S+   ++a + +d+  
  MMETSP0890-20130614|28402_1  74 RILDVGIGTGNLAKRYPKN--ARIVGVDISQSMLQVATKCLDKNR 116
                  78************99888..************999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:02.18
# Mc/sec: 497.96
//
Query:       MMETSP0890-20130614|28404_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   42.9   5.5      4e-07   29.5   0.1    3.4  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1     3e-11     4e-07       9      39 .]       4      34 ..       2      34 .. 0.94
   2 !   10.4   1.3   3.1e-05      0.43      11      32 ..      66      87 ..      57      91 .. 0.76
   3 !    4.6   0.0    0.0021        28       5      23 ..      81     108 ..      79     132 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 3e-11
                 SSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  9 gHtspVtcvafspdgpllasgSrDgtirlWd 39
                  H+s+V +++++p+++ la+gS+D + r+++
  MMETSP0890-20130614|28404_1  4 KHKSSVLSIDWHPNSQALATGSSDFKARIFS 34
                 5***************************986 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 3.1e-05
                 SSSEEEEEEESSSTEEEEEETT CS
   PF00400.27 11 tspVtcvafspdgpllasgSrD 32
                 ++++ cvafsp+g+ l   ++D
  MMETSP0890-20130614|28404_1 66 SGWIHCVAFSPSGNTLTFIGHD 87
                 49**********9998655555 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0021
                  EEEESSSSSEEEEEEESS.........S CS
   PF00400.27   5 atlrgHtspVtcvafspd.........g 23 
                   t+ gH s++    fs +         +
  MMETSP0890-20130614|28404_1  81 LTFIGHDSSIHFATFSGSqqpiiqsirY 108
                  689********99999997666666661 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 619.86
//
Query:       MMETSP0890-20130614|28426_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   37.8   0.0    2.5e-09   36.7   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.8e-13   2.5e-09      25      76 ..     112     163 ..      86     164 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.8e-13
                  HHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------ CS
   PF00271.26  25 ileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgR 76 
                   l+q +++k   ++a ++++rG+ l+d+++V+ ++ p + ++y++ +GRtgR
  MMETSP0890-20130614|28426_1 112 ALKQGTRDKPCLVLADQAIARGLHLDDLDTVFVLGQPANADTYLHLAGRTGR 163
                  5677777777****************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.98
# Mc/sec: 537.96
//
Query:       MMETSP0890-20130614|28439_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-21   75.8   0.1    7.1e-10   38.6   0.0    3.1  3  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    4.1e-20   71.0   4.0    1.4e-09   37.3   0.0    3.2  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.2e-09   37.7   0.1    0.00034   20.2   0.0    2.8  3  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.41   11.1   0.0    1.9  2  PF12681.2  Glyoxalase-like domain
       0.23   10.8   7.5        3.3    7.0   0.0    3.2  3  PF04404.7  ERF superfamily
       0.35   10.3   2.9        9.8    5.6   1.3    2.4  2  PF08858.5  IDEAL domain
        1.2    8.5   3.7         27    4.0   0.0    2.1  2  PF07565.8  Band 3 cytoplasmic domain
          4    6.9  18.1        5.9    6.4  12.6    1.3  1  PF10278.4  Mediator of RNA pol II transcription subunit 19
        7.5    4.7  16.9         48    2.0   0.0    2.0  2  PF00183.13 Hsp90 protein


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.16   2.5e+02      22      45 ..      29      51 ..      24      59 .. 0.72
   2 !   38.6   0.0   4.7e-13   7.1e-10       1      68 [.      90     159 ..      90     160 .. 0.94
   3 !   32.0   0.0   5.2e-11   7.9e-08       1      60 [.     197     261 ..     197     271 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.16
    PF14259.1 22 ygkvegvriprnkdgrgrgfAfve 45
                  g v+++  +++k +r++++A+ +
  MMETSP0890-20130614|28439_1 29 EGEVKEIVKKKKK-KRDSDEALAT 51
                 5666666665554.8*****9876 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 4.7e-13
    PF14259.1   1 lyvrglppsvteedlreffspy.gkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                  l+v++lp+sv++  l e ++    ++  ++++ +k  +++ g  fv++e+ ++A ka+++ ++ ++gr i
  MMETSP0890-20130614|28439_1  90 LFVGNLPWSVDDKGLQEVLGFDtFPIPHIKYITDKEsKKFYGSVFVDLEDVDAAAKAVARSGIEFGGRII 159
                  79******************863589*****************************************966 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 5.2e-11
    PF14259.1   1 lyvrglppsvteedlreffsp....ygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln 60 
                  l+++++ ++++e+d+++   +      +v+ vr   +kd g++rg +f++f s edA+ka+ + +
  MMETSP0890-20130614|28439_1 197 LFIGNVAYEASEDDVLRAIDKvletSDAVKAVRWLTHKDsGEFRGSGFLDFTSVEDADKAISCFD 261
                  79*******************6653345********************************98765 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.7       1.6   2.5e+03      48      66 ..      41      59 ..      40      61 .. 0.80
   2 !   33.6   0.0   1.3e-11   1.9e-08       1      70 []      90     160 ..      90     160 .. 0.95
   3 !   37.3   0.0   9.2e-13   1.4e-09       1      70 []     197     271 ..     197     271 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.6
                 SHHHHHHHHHHHTTEBETT CS
   PF00076.17 48 seedaekAlealngkklgg 66
                 +++d ++Al++ ++k+ ++
  MMETSP0890-20130614|28439_1 41 KKRDSDEALATKDKKEKKK 59
                 7899999*99999988665 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 1.3e-11
                  EEEESSTTTSSHHHHHHHHCT.CTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFsk.fGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  lfVgnLp++v+++ L e+++    pi +ik ++d e ++  g  fV+ e+ ++a+kA++   g ++ggr +k
  MMETSP0890-20130614|28439_1  90 LFVGNLPWSVDDKGLQEVLGFdTFPIPHIKYITDkESKKFYGSVFVDLEDVDAAAKAVA-RSGIEFGGRIIK 160
                  8*****************998877888********************************.********9885 PP

  == domain 3    score: 37.3 bits;  conditional E-value: 9.2e-13
                  EEEESSTTTSSHHHHH....HHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdvteeeLk....elFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  lf+gn+ ++++e+++     ++++    ++ ++  +    g  +g +f +F+s eda+kA+++ +g++l +r+++
  MMETSP0890-20130614|28439_1 197 LFIGNVAYEASEDDVLraidKVLETSDAVKAVRWLTHkDSGEFRGSGFLDFTSVEDADKAISCFDGYELYSRRIR 271
                  8************9761111456666788888888889**********************************996 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9     3e+03       9      20 ..      30      41 ..      30      51 .. 0.73
   2 !   14.4   0.0   1.5e-05     0.023      22      56 .]     131     164 ..     119     164 .. 0.87
   3 !   20.2   0.0   2.3e-07   0.00034      21      56 .]     240     275 .]     230     275 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.9
    PF13893.1  9 Gkverikifrkk 20
                 G+v++i+  +kk
  MMETSP0890-20130614|28439_1 30 GEVKEIVKKKKK 41
                 899999988777 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.5e-05
    PF13893.1  22 gqAfvefdtveaArkakeylngvklygktLkveys 56 
                  g +fv  ++v+aA ka++  +g  ++g+ +k+ y+
  MMETSP0890-20130614|28439_1 131 GSVFVDLEDVDAAAKAVA-RSGIEFGGRIIKIAYA 164
                  679**************7.59************98 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 2.3e-07
    PF13893.1  21 ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  +g +f  f +ve+A+ka++ ++g  ly ++++ +y+
  MMETSP0890-20130614|28439_1 240 RGSGFLDFTSVEDADKAISCFDGYELYSRRIRLDYA 275
                  68899*****************************98 PP

>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.41      40      87 ..     103     160 ..      66     181 .. 0.77
   2 ?   -1.0   0.0       1.5   2.3e+03      39      69 ..     226     255 ..     187     258 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00027
    PF12681.2  40 gvrellgld..........epeapggggvhlafevedldalvarlkaaGakvlgeped 87 
                  g++e+lg+d          +++ ++  + ++  + ed+da+++++  +G+++ g +++
  MMETSP0890-20130614|28439_1 103 GLQEVLGFDtfpiphikyiTDKESKKFYGSVFVDLEDVDAAAKAVARSGIEFGGRIIK 160
                  45566666666666777777888899999**********************9887765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.5
    PF12681.2  39 sgvrellgldepeapggggvhlafevedlda 69 
                  ++vr+l+++d +e +g+g   ++ +ved d 
  MMETSP0890-20130614|28439_1 226 KAVRWLTHKDSGEFRGSGFLDFT-SVEDADK 255
                  55777777776666666665555.5677765 PP

>> PF04404.7  ERF superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   5.0         1   1.5e+03     122     158 ..      42      78 ..      34      80 .. 0.75
   2 ?    7.0   0.0    0.0022       3.3      12      41 ..     118     147 ..     115     155 .. 0.84
   3 ?    1.6   0.0      0.11   1.6e+02      27      46 ..     203     223 ..     183     251 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1
    PF04404.7 122 edDdDaanpteneqsqrskqksntqaqqelkdqkqke 158
                  + D D+a  t+ ++++++k++++t+++   ++++q++
  MMETSP0890-20130614|28439_1  42 KRDSDEALATKDKKEKKKKKEKVTSETSTFEEKNQYS 78 
                  5677877778888888888888888888877777765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0022
    PF04404.7  12 lkqpkksasnkfykykYasledileaikkv 41 
                  +k+++++ s+kfy++ +++led+  a k v
  MMETSP0890-20130614|28439_1 118 IKYITDKESKKFYGSVFVDLEDVDAAAKAV 147
                  78999999**************97766655 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.11
    PF04404.7  27 kYa.sledileaikkvlskhg 46 
                  +Y+ s +d+l+ai+kvl+  +
  MMETSP0890-20130614|28439_1 203 AYEaSEDDVLRAIDKVLETSD 223
                  6776889*********98765 PP

>> PF08858.5  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.3    0.0064       9.8       5      28 ..      32      55 ..      31      56 .. 0.76
   2 ?    3.1   0.0     0.041        62      10      24 ..     207     221 ..     198     223 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0064
    PF08858.5  5 slaefrkekLlelIDlALdtrDke 28
                 ++++ +k+k ++  D+AL t+Dk+
  MMETSP0890-20130614|28439_1 32 VKEIVKKKKKKRDSDEALATKDKK 55
                 56666666667777*********8 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.041
    PF08858.5  10 rkekLlelIDlALdt 24 
                   + ++l+ ID+ L+t
  MMETSP0890-20130614|28439_1 207 SEDDVLRAIDKVLET 221
                  56799********98 PP

>> PF07565.8  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.5     0.019        29      82     160 ..      17      94 ..       3      97 .. 0.51
   2 ?    4.0   0.0     0.017        27     224     246 ..     201     222 ..     194     232 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.019
    PF07565.8  82 keksvllptkrsladlgkllsekkkaeqselslqkslelekakeseslekveeekkkanekllrkipegaEAsvVLvGe 160
                  +++sv + ++ +  ++++ +++kkk+++s+++l ++ + ek+k++e+++ +e+++ +++++  +   + + A+   vG 
  MMETSP0890-20130614|28439_1  17 NQSSVDFVIVGEEGEVKEIVKKKKKKRDSDEALATKDKKEKKKKKEKVT-SETSTFEEKNQYSKSFDNPTGATRLFVGN 94 
                  3444444455555555555555555555555555554444444443333.34444445555666666666777777775 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.017
    PF07565.8 224 evaykAkdrkdLlaaideFLdes 246
                  +vay+A+ ++d+l+aid+ L+ s
  MMETSP0890-20130614|28439_1 201 NVAYEAS-EDDVLRAIDKVLETS 222
                  6899996.68**********998 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  12.6    0.0039       5.9     109     173 ..       5      68 ..       1      73 [. 0.66

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0039
    PF10278.4 109 PkkkskekhkkskvkdalseetlsdseteegfekkkkkkkkedDkerkkkkkekkkkkkrksped 173
                  P kk k k kk+ ++ +++   + ++   +   kkkkkk+  d+    k kkekkkkk++ ++e+
  MMETSP0890-20130614|28439_1   5 PLKKAK-KEKKEVNQSSVDFVIVGEEGEVKEIVKKKKKKRDSDEALATKDKKEKKKKKEKVTSET 68 
                  666644.6677777777776666666555555555555555566667899999999999888775 PP

>> PF00183.13  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6  12.5       0.2     3e+02      29      91 ..      10      76 ..       5      83 .. 0.69
   2 ?    2.0   0.0     0.032        48     101     136 ..     119     154 ..     114     178 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.2
                 E---------XXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXEXXXXXXXEEEEEEESX CS
   PF00183.13 29 kevekevpdeeee....eekeekeeeeekeeeekkeeeeeeeeeeeekkkktkkvkettteeellnk 91
                 k+++kev +   +     e+ e +e  +k++++++ +e+   ++++ekkkk+ kv+ +t   e+ n+
  MMETSP0890-20130614|28439_1 10 KKEKKEVNQSSVDfvivGEEGEVKEIVKKKKKKRDSDEALATKDKKEKKKKKEKVTSETSTFEEKNQ 76
                 555666666555422112334444444555677788888899999*************999999997 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.032
                  GGSXHHHHHHHHHCCCTTTSXXSEEEEEEEXXXXXE CS
   PF00183.13 101 kdvteeeyaafyksltndwedplavkhfsveGqlef 136
                  k +t++e ++fy s+  d ed  a     +   +ef
  MMETSP0890-20130614|28439_1 119 KYITDKESKKFYGSVFVDLEDVDAAAKAVARSGIEF 154
                  569******************777776666666777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1663  (0.121635); expected 273.4 (0.02)
Passed bias filter:                      732  (0.0535401); expected 273.4 (0.02)
Passed Vit filter:                       105  (0.00767993); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.42s 00:00:01.22 Elapsed: 00:00:01.02
# Mc/sec: 646.08
//
Query:       MMETSP0890-20130614|28444_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-54  184.3   0.0    2.6e-54  183.8   0.0    1.2  1  PF05711.6 Macrocin-O-methyltransferase (TylF)
    1.1e-07   32.5   0.0    6.8e-07   29.9   0.0    2.4  3  PF13578.1 Methyltransferase domain
  ------ inclusion threshold ------
        0.2   10.7   0.0       0.37    9.9   0.0    1.3  1  PF04989.7 Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> PF05711.6  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   5.8e-58   2.6e-54      51     242 ..     329     518 ..     320     525 .. 0.90

  Alignments for each domain:
  == domain 1    score: 183.8 bits;  conditional E-value: 5.8e-58
    PF05711.6  51 ahtmiGlkrlenlqecveevladgvpGdlietGvWrGGacilmravlaayg.vedrtvwvadsfaGlPevdedeykad.kelelhelnevlavsletvrenferygllddqvrflpGwfkdtlpeapierlavlrldGdlyestidaltslypklspGGfvivddyaidacreavkdyrdkhGit.deieeidrt 242
                   htm+G+++l+ +q+++e  l+d+vpGd++e+G WrGGa+i+m++vl a +  ++r v vad+faG+P ++++   +d ++++l+++   ++     vr+ f+ry+l+dd+v+ l+G+f++tlp+ap  ++a lrld d+y st+dal++ly+k+spGG v+ ++++  + r+a  d+r++  ++  +++ +d +
  MMETSP0890-20130614|28444_1 329 GHTMVGVHKLNWIQAMIEGLLNDKVPGDIVECGAWRGGASIFMKGVLDAIEpHSQRAVLVADTFAGFPPAEDE---VDtNGWALQNFG--VGGGAAAVRDTFKRYDLFDDRVHILEGFFNETLPNAPTFSIAFLRLDCDMYRSTLDALNALYDKVSPGGIVVHNNWQYTSARAAFLDFRRQRNLEyMPLHLVDGN 518
                  6************************************************983568*************98774...440456666554..588899***********************************************************************************9998863467777765 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.8     8e+03       6      24 ..      34      52 ..      33      87 .. 0.79
   2 ?   -2.4   0.0       1.7   7.9e+03      66      80 ..     263     280 ..     237     290 .. 0.69
   3 !   29.9   0.0   1.5e-10   6.8e-07       1     104 [.     358     487 ..     358     489 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.8
    PF13578.1  6 ysGvstlvllqalkrngag 24
                  sG+ ++++ + l+rn+++
  MMETSP0890-20130614|28444_1 34 VSGAVSIIVSEHLRRNEES 52
                 5899999999999999873 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.7
    PF13578.1  66 a...dgsiDllfiDggha 80 
                      ++++Dl + Dg+ +
  MMETSP0890-20130614|28444_1 263 TvrlKSKVDLTIGDGDAS 280
                  133458899999999854 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 1.5e-10
    PF13578.1   1 vEiGvysGvstlvl...lqalkrngagrlysvdpdpg.......................aeeaaalaee.agladrvrllkgdseealasladgsiDllfiDgghaaeavladleallprlapggvvlld 104
                  vE+G+++G  ++++   l+a++ + +  ++  d+ +g                       a+++++ +++ + ++drv++l+g + e+l++ ++ si +l +D++  ++++l +l+al++++ pgg+v+  
  MMETSP0890-20130614|28444_1 358 VECGAWRGGASIFMkgvLDAIEPHSQRAVLVADTFAGfppaedevdtngwalqnfgvgggAAAVRDTFKRyDLFDDRVHILEGFFNETLPNAPTFSIAFLRLDCD-MYRSTLDALNALYDKVSPGGIVVHN 487
                  8**********997333666777777889999999999999988888888888887777766666666668999*******************88*********9.7*********************965 PP

>> PF04989.7  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   8.2e-05      0.37      23      67 ..     344     390 ..     327     394 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.2e-05
    PF04989.7  23 ayqellwelkPdliiEtGiahGGSllflasllell..eekgkVlgiD 67 
                  +++ ll +  P  i+E+G  +GG  +f+  +l+++  ++++ Vl  D
  MMETSP0890-20130614|28444_1 344 MIEGLLNDKVPGDIVECGAWRGGASIFMKGVLDAIepHSQRAVLVAD 390
                  556788888999**********************9666677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.72
# Mc/sec: 1750.67
//
Query:       MMETSP0890-20130614|28454_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-46  157.3   1.4    3.5e-46  156.6   1.0    1.4  1  PF01018.17 GTP1/OBG
      1e-20   73.6   0.0    7.3e-19   67.7   0.0    2.4  1  PF01926.18 50S ribosome-binding GTPase
    8.7e-17   60.4   0.1      2e-16   59.2   0.1    1.6  1  PF09269.6  Domain of unknown function (DUF1967)
    1.3e-06   27.6   0.5     0.0014   17.7   0.0    2.4  2  PF02421.13 Ferrous iron transport protein B
    0.00086   19.0   0.0      0.002   17.8   0.0    1.7  1  PF00350.18 Dynamin family
  ------ inclusion threshold ------
      0.016   14.5   0.0          4    6.7   0.0    2.5  2  PF00009.22 Elongation factor Tu GTP binding domain
      0.026   14.8   0.0       0.48   10.8   0.0    2.4  2  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF01018.17  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   1.0   1.8e-49   3.5e-46       1     155 [.      16     171 ..      16     172 .. 0.97

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 1.8e-49
                  EEEEEEEEEE-------------BTTC---------------EEEEE-----SSGGGGT--EEE--------TTT--------EEEEE----EEEETT.T--EEEE------EEEEE---------CCC-BTTCSS------------EEEEEEEE CS
   PF01018.17   1 fvDqveievkaGnGGnGivsfrrekyvekGGPdGGdGGrGGdvilevdenldtLldfrykkhlkaedGkkGksknraGkngeDlvikvPvGtvvldee.keellaDlveagqrllvakGGkgGlGnaafksavkkaPklaenGeeGeerellLelk 155
                  f D++++ev +G+GG+G+++frrek v+ GGP+GG+GG+GG+vil  d+ l+tL   r + ++ a +Gk+G++ +++ k+++D+ i+vP+Gt + + +  +++ ++l+e+g+ ++va+GG+gG+Gnaafk+ +  aP++ae+Ge+G +r ++Lel 
  MMETSP0890-20130614|28454_1  16 FWDEARLEVCGGDGGDGCLAFRREKCVPLGGPSGGNGGSGGSVILVCDARLNTLGVARRRTKYAAPSGKRGQGASKHAKRANDMYIRVPPGTIIREWDpPHRVAGELTEDGETMIVARGGRGGRGNAAFKTDRLTAPRIAEHGENGARRVIKLELA 171
                  6799*******************************************************************************************9772578999*************************************************96 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   3.7e-22   7.3e-19       1     114 []     175     398 ..     175     398 .. 0.86

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 3.7e-22
                  EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEE................................................................................................E.......ETTE.....EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS..HHHHHHHHHHHHHH......TCCCEEEEEEC CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditene................................................................................................v.......kkek.....iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa..vlkeadkellnele......akkplilvlnk 114
                  +v+ivG+pN+GKStL+ + t++k  k++dyp+tT+ ++ +                                                                                                 +       +  +     ++l+D+PG+ie+a+ +    + + +l++ver+ vll+++da+a  ++ ++ k++ +ele      akk+ i++lnk
  MMETSP0890-20130614|28454_1 175 DVGIVGKPNAGKSTLLASCTRAKP-KIADYPFTTLIPNLGVwepprkftqlsnqessftprarrsrvgglgkrqraklqkssdnkstkkkrqyldtpefysqstqthnangapidafaeqqlalalgldtakemrssFidtnsqsN--TdqeegLVLADVPGLIEDAHLGAG--MGDAFLRHVERCRVLLHLIDATAqdPI-ADLKAIEKELEaysptlAKKQRIICLNK 398
                  69******************9866.************8866788889999999************************************************************999999999988888887777666256544442..03356779**********999995..7899****************6664433.3688888888444566799999999998 PP

>> PF09269.6  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.1     1e-19     2e-16       8      64 ..     494     551 ..     487     557 .. 0.91

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 1e-19
                  ---EEEE-HHHHHHHTTEE--TGGG---HHHHHHH---HHHHHT-------EEE--.- CS
    PF09269.6   8 dgvfvVeGekierlvkqtnfdndealgylarrLkklGvedaLrkaGakeGdtVrIg.d 64 
                  dg +++e++++e+++ +tnf++++a+ ++ r+L++lG+ + L+++Gak+Gd V Ig d
  MMETSP0890-20130614|28454_1 494 DGQWRIESARLEKIATMTNFEQPDAVARFGRVLQALGIAQDLQERGAKAGDLVMIGdD 551
                  579****************************************************963 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.1e-07    0.0014       3      34 ..     176     207 ..     174     218 .. 0.91
   2 !    7.4   0.3    0.0011       2.1     105     176 ..     389     461 ..     355     469 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 7.1e-07
                  EEEE--TT---HHHHHHH----TB-------- CS
   PF02421.13   3 valvGnpnvGKttlfnaltgakqkvgNwpGvT 34 
                  v +vG+pn+GK+tl+ + t ak k++ +p +T
  MMETSP0890-20130614|28454_1 176 VGIVGKPNAGKSTLLASCTRAKPKIADYPFTT 207
                  789*************************9888 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0011
                  T-SEEEEEETHHHHHC---EB-HHHHHHH----EEE.EBCCGTB--HHHHHHHHHHCTCG-XXX..XXX.HHH CS
   PF02421.13 105 gvpvvvalnmiDeaekkgikidlkkLselLgvpvvk.tvarkkkgieelleaiievaekeekekkllkyseel 176
                  +++ +++ln+ D+++ +  +i  ++++++ +  + + ++a++++++++l+ ++ +++ ++++++++ +++++l
  MMETSP0890-20130614|28454_1 389 KKQRIICLNKADALQPASANILRQQFAHQNNNVLPPiISAATGENVQALMLRLRQIVIADKQKNTKADIKTKL 461
                  67789********************9987654444337899*********99988777766665544444444 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     1e-06     0.002       1     157 [.     176     383 ..     176     400 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1e-06
                  EEEE--TT---HHHHHHH-----------------EEEEE.............................EE------------E-EET-----CHHHHHHHHHHH-----------SS.................................................-EEEEEEETTS-SEEEEE------------...HHHHHHHSTTEEEEEEEETTS-STT-SHHHHHHHH--- CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlgedilprgpgptTrrplvlql.............................geeeraseravkeevkeeekkledfdevreeieketeklagankgiskk.................................................villkilsllvkgltlvDtPGldsvnkrdq...elveeyikkadiilavtdanhdlstsealflarevdpk 157
                  + +vG+ +aGKS+ll +   ++   +   p T  +  l                               g                            + ++ + +k++  nk+++kk                                                  ++ +  +  ++gl+l D PGl + +       +   +++++++++l++ da  +   ++ + +++e++  
  MMETSP0890-20130614|28454_1 176 VGIVGKPNAGKSTLLASCTRAK-PKIADYPFTTLIPNLGVwepprkftqlsnqessftprarrsrvgglG----------------------------KRQRAKLQKSS-DNKSTKKKrqyldtpefysqstqthnangapidafaeqqlalalgldtakemrssfiDTNSQSNTDQEEGLVLADVPGLIEDAHLGAgmgDAFLRHVERCRVLLHLIDATAQDPIADLKAIEKELEAY 383
                  679**************99999.66888899999999999666666666655555555555555555443............................44444444444.222222223444444444444444444444445568899999************9765566666677889*********6655544488899999999***********9999999999999988764 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0021         4       5      29 ..     175     199 ..     172     205 .. 0.83
   2 ?    5.1   0.0    0.0063        12     123     181 ..     390     440 ..     357     450 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0021
                  EEEEEESTT---HHHHHHHHHHCCC CS
   PF00009.22   5 nigiighvDhGKtTltdallykaga 29 
                   +gi+g  ++GK+Tl+++ + +  +
  MMETSP0890-20130614|28454_1 175 DVGIVGKPNAGKSTLLASCTRAKPK 199
                  589*************998766655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0063
                  --EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHH CS
   PF00009.22 123 vkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLlea 181
                   ++i+++NK D ++    +i ++           ++ ++v    +Sa +ge+++aL+  
  MMETSP0890-20130614|28454_1 390 KQRIICLNKADALQPASANILRQQFA-------HQN-NNVLPPIISAATGENVQALMLR 440
                  4499*******997766666554431.......222.2455556899999999988765 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00024      0.48       2      25 ..     176     199 ..     175     234 .. 0.87
   2 ?    1.3   0.0      0.21   4.1e+02      70     119 .]     351     400 ..     307     400 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00024
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp 25 
                  v +vG++++GKs+ll++ ++ + +
  MMETSP0890-20130614|28454_1 176 VGIVGKPNAGKSTLLASCTRAKPK 199
                  78**************99877665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.21
    PF08477.8  70 llkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                  +++++ + l ++d t ++ +++++++ ++l+  +    k   i++ nk D
  MMETSP0890-20130614|28454_1 351 HVERCRVLLHLIDATAQDPIADLKAIEKELEAYSPTLAKKQRIICLNKAD 400
                  4889999***********************99999888899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:00.76
# Mc/sec: 1945.46
//
Query:       MMETSP0890-20130614|28464_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-19   68.7   0.0    5.1e-19   68.2   0.0    1.2  1  PF10294.4 Putative methyltransferase
    7.2e-05   22.8   0.0    0.00011   22.1   0.0    1.3  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)
     0.0045   16.0   0.0      0.006   15.6   0.0    1.3  1  PF06325.8 Ribosomal protein L11 methyltransferase (PrmA)
  ------ inclusion threshold ------
       0.02   15.3   0.0      0.038   14.4   0.0    1.5  1  PF12847.2 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   1.5e-22   5.1e-19      44     157 ..       2     114 ..       1     131 [. 0.83

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 1.5e-22
    PF10294.4  44 elsglsvlELGsG.tGlvGiavalllpeakviltDleellellkknielnkn.alsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketk.ilvay 157
                  +l+g+++lELGsG tG+ G+a+a+l +  +viltD ee+l+ l+ n+  n   + ++  + ++LdW + l   ++e+ e+Dl+la Dc+Y  + ++   +tL+++l+++ k + + +
  MMETSP0890-20130614|28464_1   2 KLTGKRILELGSGsTGVLGLAAAAL-GARSVILTDREEVLPTLRANVLRNVTlFSDTVLECRALDWSKPL-APIIEN-EIDLVLACDCLYE-SNVSIFDSTLRKILSRHRKaVAIII 114
                  57899********88********99.899********************999445555689*********.666666.69*********95.6788999999999888777544444 PP

>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.2e-08   0.00011      70     209 ..     233     361 ..     171     363 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.2e-08
                  HHHHHHHH----SEEE...EEEEE.....E---S-----E.EEE-GGGTS-EE----EE-EEEESS-B-S----EEEE---------..........................-EEE----..............----....... CS
    PF05721.8  70 kvadlvrailgqdvyvaavlqsmyqd...ifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae...ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                  ++++ +r+++++ ++        +++   ++ +p  G++ qpwH D    + +  +++v++ ial  +  + G + ++P +H+++ +     +   ++ ++   + ++  +   ++v  +++ Gd+  + ++l+H++ga+  + +R
  MMETSP0890-20130614|28464_1 233 YLDSEIRRLFSSQPL--------LYEygaMVSEP--GAALQPWHADTRCDNEE-DQAMVTFFIALSRI--THGHTLLLPKTHTSAFHK--IARS--EFFDGrllSFPVIHKLGIPVVRSTLDIGDICAMASTLFHAGGAHDGTEPR 361
                  455555555555553........33335577888..9999******9998866.5*************..88************6663..2222..2222236777888889999************************9988887 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.8e-06     0.006     161     207 ..       4      50 ..       1     118 [. 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.8e-06
    PF06325.8 161 egeevlDvGtGS.GiLaiaaakLgakkvvavDiDevAvkvakeNaelN 207
                  +g+++l +G GS G+L +aaa Lga++v+ +D +ev +   ++N+ +N
  MMETSP0890-20130614|28464_1   4 TGKRILELGSGStGVLGLAAAALGARSVILTDREEV-LPTLRANVLRN 50 
                  6889*******989******************9987.34445555555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.1e-05     0.038       2      87 ..       5      94 ..       4     130 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
    PF12847.2  2 gkrilDlGcG.tGslslelarlrpgakvvgvDpseeslelarenaksldleerie.....llqgdakeelsller........fDavllkg.ltldallal 87
                 gkril+lG+G tG l+l++a    ga+ v +  +ee l  +r+n+  l    +++     +l++ a   l++  +        +D+vl+ + l ++ ++++
  MMETSP0890-20130614|28464_1  5 GKRILELGSGsTGVLGLAAAA--LGARSVILTDREEVLPTLRANV--L---RNVTlfsdtVLECRA---LDWSKPlapiieneIDLVLACDcLYES-NVSI 94
                 799******956888888888..99996666667***********..3...444411133444444...56665566888899****997733222.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.90
# Mc/sec: 1043.75
//
Query:       MMETSP0890-20130614|28489_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-12   45.8   8.8    6.1e-06   25.6   0.0    3.9  5  PF12799.2  Leucine Rich repeats (2 copies)
    5.5e-08   31.6   4.6      0.068   13.1   0.1    5.9  7  PF00560.28 Leucine Rich Repeat
     0.0001   21.8   6.0     0.0014   18.1   0.1    3.2  2  PF13855.1  Leucine rich repeat
    0.00072   19.2   1.6          1    9.5   0.0    4.8  5  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
      0.036   14.1   4.3          4    7.9   0.0    4.9  5  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.2   5.9e+03      11      17 ..      46      52 ..      44      61 .. 0.53
   2 ?   -2.9   0.0       1.8   4.9e+03      29      37 ..      76      84 ..      76      88 .. 0.78
   3 !   25.6   0.0   2.2e-09   6.1e-06       1      37 [.      94     130 ..      94     136 .. 0.93
   4 !   20.7   0.1   7.7e-08   0.00021       1      36 [.     138     173 ..     138     178 .. 0.93
   5 ?    3.0   0.2     0.027        72      15      26 ..     181     192 ..     174     204 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.2
    PF12799.2 11 NnIkdlp 17
                 N I+ ++
  MMETSP0890-20130614|28489_1 46 NHITRVE 52
                 4444333 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.8
    PF12799.2 29 LnLsnNpis 37
                 L+L +N i+
  MMETSP0890-20130614|28489_1 76 LSLYGNVIC 84
                 788888875 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 2.2e-09
    PF12799.2   1 tnLevLdLsnNnIkd.lppelanLpnLktLnLsnNpis 37 
                  +nL +L+Ls+N ++   p  +a L+ Lk  +L++N++s
  MMETSP0890-20130614|28489_1  94 KNLIYLNLSRNELTGpFPK-IAHLRRLKFVHLEHNKFS 130
                  7*************76999.****************98 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 7.7e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpi 36 
                  + LevL  ++N+++ dlp  l+ +p+L  L+L  N +
  MMETSP0890-20130614|28489_1 138 PELEVLTAQDNQLSgDLPM-LSTCPKLHKLWLFDNFL 173
                  67************99***.************99975 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.027
    PF12799.2  15 dlppelanLpnL 26 
                   +pp+l++L++L
  MMETSP0890-20130614|28489_1 181 AIPPSLKSLSSL 192
                  577777766665 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   7.1e+03      10      17 ..      46      53 ..      44      67 .. 0.56
   2 ?   -1.8   0.0       1.9   5.3e+03       5      13 ..      76      84 ..      74      93 .. 0.76
   3 !   13.1   0.1   2.5e-05     0.068       1      22 []      95     116 ..      95     116 .. 0.90
   4 ?    4.8   0.0     0.013        35       1      19 [.     118     136 ..     118     138 .. 0.89
   5 ?    4.0   0.0     0.023        64       2      20 ..     140     158 ..     139     160 .. 0.86
   6 !    5.6   0.0    0.0069        19       1      22 []     162     189 ..     162     189 .. 0.82
   7 ?    0.4   0.0      0.36   9.9e+02       1      18 [.     188     206 ..     188     209 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.6
                 SBCBCHHH CS
   PF00560.28 10 Nnltslpp 17
                 N++t +  
  MMETSP0890-20130614|28489_1 46 NHITRVEA 53
                 55554332 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.9
                 EEETSSBCB CS
   PF00560.28  5 LdLsgNnlt 13
                 L+L gN ++
  MMETSP0890-20130614|28489_1 76 LSLYGNVIC 84
                 899999887 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 2.5e-05
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL +L+Ls+N lt  +p+ + +L
  MMETSP0890-20130614|28489_1  95 NLIYLNLSRNELTgPFPK-IAHL 116
                  89***********99999.7776 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.013
                  TESEEEETSSBCB.CHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppsl 19 
                  +L+  +L +N+++  lpp +
  MMETSP0890-20130614|28489_1 118 RLKFVHLEHNKFSgPLPP-F 136
                  59999********99**9.7 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.023
                  ESEEEETSSBCB.CHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsls 20 
                  Le+L  ++N+l+ +lp  ls
  MMETSP0890-20130614|28489_1 140 LEVLTAQDNQLSgDLPM-LS 158
                  999*********99997.65 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.0069
                  TESEEEETSS.BCB.C....HHHHHHHH CS
   PF00560.28   1 nLeeLdLsgN.nlt.s....lppslsnL 22 
                  +L +L L +N  lt s    +ppsl++L
  MMETSP0890-20130614|28489_1 162 KLHKLWLFDNfLLTgSlqqaIPPSLKSL 189
                  6999******555544999999999987 PP

  == domain 7    score: 0.4 bits;  conditional E-value: 0.36
                  TESEEEETSSBCB.CHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpps 18 
                  +L +L + +++++  +p+ 
  MMETSP0890-20130614|28489_1 188 SLSSLLFTHTQIQgPIPDH 206
                  5888999999999999985 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   5.3e-07    0.0014      25      61 .]      94     129 ..      76     129 .. 0.88
   2 ?    3.9   1.0     0.014        39       2      60 ..     139     198 ..     138     199 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.3e-07
    PF13855.1  25 snLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +nL +L+Ls+n+l+   p++ ++L++L+ + L++N++
  MMETSP0890-20130614|28489_1  94 KNLIYLNLSRNELTGPFPKI-AHLRRLKFVHLEHNKF 129
                  79***********9998888.9*************85 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.014
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnl..ksispeafkgLpsLreLnLsgNr 60 
                  +L++L  ++N l+ ++p  +++ +++L++L L +n l   s+   +  +L+sL++L + +++
  MMETSP0890-20130614|28489_1 139 ELEVLTAQDNQLSgDLP--MLSTCPKLHKLWLFDNFLltGSLQQAIPPSLKSLSSLLFTHTQ 198
                  67777777776666666..7777777777777766663224444445566666666666665 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00038         1       2      17 ..      94     109 ..      94     114 .. 0.87
   2 ?   -0.0   0.0      0.44   1.2e+03       2      16 ..     117     131 ..     115     134 .. 0.78
   3 ?    2.0   0.0     0.095   2.6e+02       4      18 ..     140     154 ..     138     158 .. 0.84
   4 ?   -1.6   0.1       1.5     4e+03       1      14 [.     160     173 ..     160     179 .. 0.80
   5 ?    1.0   0.0      0.21   5.8e+02       1      16 [.     186     201 ..     186     208 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00038
    PF13516.1   2 knLtsLdLsnNqigde 17 
                  knL +L+Ls+N +++ 
  MMETSP0890-20130614|28489_1  94 KNLIYLNLSRNELTGP 109
                  79**********9976 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.44
    PF13516.1   2 knLtsLdLsnNqigd 16 
                    L+  +L +N++++
  MMETSP0890-20130614|28489_1 117 RRLKFVHLEHNKFSG 131
                  5677889****9875 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.095
    PF13516.1   4 LtsLdLsnNqigdeG 18 
                  L++L  ++Nq++++ 
  MMETSP0890-20130614|28489_1 140 LEVLTAQDNQLSGDL 154
                  899999*****9875 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.5
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  +++L  L L +N +
  MMETSP0890-20130614|28489_1 160 CPKLHKLWLFDNFL 173
                  89999999888864 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.21
    PF13516.1   1 lknLtsLdLsnNqigd 16 
                  lk+L+sL + ++qi +
  MMETSP0890-20130614|28489_1 186 LKSLSSLLFTHTQIQG 201
                  689****999999976 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0015         4       2      15 ..      95     108 ..      94     111 .. 0.88
   2 ?    0.2   0.0      0.53   1.5e+03       2      14 ..     118     130 ..     115     134 .. 0.70
   3 ?    0.0   0.0       0.6   1.6e+03       2      17 .]     139     155 ..     138     155 .. 0.74
   4 ?    2.1   0.0      0.13   3.5e+02       1      14 [.     161     175 ..     161     183 .. 0.81
   5 ?   -2.3   0.0       3.5   9.6e+03       1       7 [.     184     190 ..     184     196 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0015
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  nL +L+Ls+n+Lt 
  MMETSP0890-20130614|28489_1  95 NLIYLNLSRNELTG 108
                  999*********95 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.53
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +Lk+ +L +n++ 
  MMETSP0890-20130614|28489_1 118 RLKFVHLEHNKFS 130
                  5666689999875 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.6
    PF13504.1   2 nLkeLdLsgnrLt.sLP 17 
                   L++L   +n+L  +LP
  MMETSP0890-20130614|28489_1 139 ELEVLTAQDNQLSgDLP 155
                  58999999999962465 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.13
    PF13504.1   1 pnLkeLdLsgnr.Lt 14 
                  p+L +L L +n  Lt
  MMETSP0890-20130614|28489_1 161 PKLHKLWLFDNFlLT 175
                  689********8555 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 3.5
    PF13504.1   1 pnLkeLd 7  
                  p+Lk L+
  MMETSP0890-20130614|28489_1 184 PSLKSLS 190
                  6888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:01.41
# Mc/sec: 433.38
//
Query:       MMETSP0890-20130614|28500_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   31.6   0.0    1.5e-07   31.5   0.0    1.0  1  PF01467.21 Cytidylyltransferase


Domain annotation for each model (and alignments):
>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.1e-11   1.5e-07       2      61 ..      20      87 ..      19      88 .] 0.95

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.1e-11
                 B----TT-----HHHHHHHHHHSSSS.EEEEEEECTCCCSTT........CTSTHHHHHHHHHHHHTC CS
   PF01467.21  2 agGtFDpiHlGHlrlleqakelldedlivvvpsdespkkdtk........plfsaeeRvamlelalev 61
                 + G F piH GH++ l+ ak++ + ++  vv ++ sp++d++        + f+++ R+ ++++ale+
  MMETSP0890-20130614|28500_1 20 LTGAFAPIHRGHIETLDIAKDHYESEGHRVVGGIVSPSSDEYlgmkstslGKFTLDVRLNLCRRALEE 87
                 68***********************99*********************9999************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:01.28
# Mc/sec: 164.75
//
Query:       MMETSP0890-20130614|28496_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   30.0   0.0      3e-07   30.0   0.0    1.1  1  PF08190.7 pre-RNA processing PIH1/Nop17


Domain annotation for each model (and alignments):
>> PF08190.7  pre-RNA processing PIH1/Nop17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.2e-11     3e-07     253     328 .]     102     175 ..      18     175 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.2e-11
    PF08190.7 253 dsk.segvpkelvieieLPgvksvaevdLrvsedrlllevekekYrLdlkLpypvdeeeaeAkFnkkkktLtvtlpV 328
                  +sk s+++ ++l  +i+ P+    +e++L+v++++l+ e+ +   +L l Lp+pv+ ++++A+++ + + L v++p+
  MMETSP0890-20130614|28496_1 102 QSKaSSTKAHALLYKINFPKH-QRSEIRLQVTATTLCAESTR--LKLALYLPQPVESDRGKATWDDSLQVLSVSIPI 175
                  36779***************8.679********999998877..9*****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.33s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 619.06
//
Query:       MMETSP0890-20130614|28499_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:00.63
# Mc/sec: 1384.56
//
Query:       MMETSP0890-20130614|28505_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    7.3   7.7        6.6    6.1   0.2    2.1  2  PF04156.9 IncA protein
        7.7    5.8   8.7         14    5.0   0.4    2.1  2  PF11990.3 Protein of unknown function (DUF3487)


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.4    0.0025        17      19      44 ..      22      47 ..      19      74 .. 0.78
   2 ?    6.1   0.2   0.00096       6.6      27      54 ..      91     118 ..      84     144 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0025
    PF04156.9 19 iasGiallvlfasslgvlisallgiv 44
                 +++Gi++l+++++ +++  + ++++v
  MMETSP0890-20130614|28505_1 22 LCVGILVLICCIVFMSSSGTYISVVV 47
                 699********998555555555544 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00096
    PF04156.9  27 vlfasslgvlisallgivliAlgvvLla 54 
                  +l +  l +++ +++ +++i+l+ v l 
  MMETSP0890-20130614|28505_1  91 ILICLFLFAMYGFGIAMAIIVLATVALN 118
                  4444447777777777777776555443 PP

>> PF11990.3  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.6    0.0025        17      15      61 ..      14      60 ..       9      64 .. 0.88
   2 ?    5.0   0.4     0.002        14      31      69 ..      80     117 ..      76     138 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0025
    PF11990.3 15 pvvirGltadElgvvaglslalglvvglllalllgtialiptlavlg 61
                 p+  +Gl+    ++v+++++++    g  +++++g  ++ +t++ l+
  MMETSP0890-20130614|28505_1 14 PALTKGLSLCVGILVLICCIVFMSSSGTYISVVVGFETMLFTIIQLV 60
                 78889999999999999999999999999999***999999998775 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.002
    PF11990.3  31 glslalglvvglllalllgtialiptlavlgvilvvlvg 69 
                  +ls+   + +++l++l l ++  ++++a+ +++l  ++ 
  MMETSP0890-20130614|28505_1  80 LLSAPSQIFLSILICLFLFAM-YGFGIAMAIIVLATVAL 117
                  566667778888877765555.35555544444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       805  (0.0588795); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 604.01
//
Query:       MMETSP0890-20130614|28515_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        9.6    5.3  11.1        1.1    8.4   3.6    1.9  2  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2     0.026   3.6e+02     255     287 ..      12      36 ..       5      58 .. 0.55
   2 ?    8.4   3.6   7.7e-05       1.1     267     322 ..     198     255 ..     155     277 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.026
                  XXXXXXXX......................... CS
   PF04652.11 255 dsqlPsaPtyaqknssssqsvfPpsseeeetss 287
                  +sq  saP        s+ +++Pp+++e++++ 
  MMETSP0890-20130614|28515_1  12 NSQYHSAP--------SIARTPPPTQQEQTQRA 36 
                  33333333........33344444443333322 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 7.7e-05
                  ..................................................XXXXXXXX CS
   PF04652.11 267 knssssqsvfPpsseeeetssss..ppsteapssppvqapsapakpslssakPtaqsa 322
                  k++ s+ + +Pp+s+++++s+ s   p  e++++ ++q +++ ++ ++++a+P+ +  
  MMETSP0890-20130614|28515_1 198 KAHVSRLPPPPPPSKKSSNSPDStaIPGEERRPPFQQQRQHSFSSGYKPQARPQVPPR 255
                  3444444555555555555555556777777777777788888888899999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:00.63
# Mc/sec: 1494.87
//
Query:       MMETSP0890-20130614|28534_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-05   25.1   0.1    3.5e-05   23.7   0.0    1.7  1  PF01713.16 Smr domain
    6.2e-05   22.7   0.0    0.00044   20.0   0.0    2.1  2  PF13041.1  PPR repeat family
     0.0014   18.6   7.8        1.7    9.0   0.0    4.8  5  PF13812.1  Pentatricopeptide repeat domain
     0.0081   15.9   1.2       0.16   11.8   0.0    3.3  4  PF01535.15 PPR repeat
  ------ inclusion threshold ------
       0.14   12.3   7.7      0.063   13.4   2.4    2.5  2  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   3.5e-05       1      61 [.     157     226 ..     157     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.3e-08
                  EE-----HHHHHHHHHHHHHHHHHHHH.......-EEEEE----....---..HHHHHHHHHHTTHCECC CS
   PF01713.16   1 lDLHgltveeAlealeefldrarskgl.......rtvliitGkGshseggv..LkkavkewLdesrkaee 61 
                  +DLHg++++ A+ al+ +l+++ ++           ++ + G+G  s++g+  L++ ++e+L+ s++++ 
  MMETSP0890-20130614|28534_1 157 VDLHGHSRATAVLALRAALADLSHHVNndnitngIALTLVAGRGTRSASGRpvLREILQEMLQTSPERDN 226
                  6*******************99988889999*999999******888777666*********77666654 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.35   9.5e+02      37      49 ..       9      21 ..       4      36 .. 0.64
   2 !   20.0   0.0   1.6e-07   0.00044      12      48 ..      88     124 ..      83     126 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.35
    PF13041.1 37 nvyTYsilikglc 49
                 n+ TY + i +l+
  MMETSP0890-20130614|28534_1  9 NEATYATAIAALA 21
                 4455555555544 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.6e-07
    PF13041.1  12 glckkgkveeAfklfneMkkrgikPnvyTYsilikgl 48 
                   +++kg ++ A+ lf++M+k g + ++ +Y  l+ +l
  MMETSP0890-20130614|28534_1  88 RHVEKGSWRTAMGLFRQMQKDGFPHTTRSYCALLEAL 124
                  6899******************************998 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.4    0.0062        17       2      24 ..      11      36 ..      10      38 .. 0.81
   2 ?    2.4   0.0     0.081   2.2e+02       3      25 ..      46      68 ..      44      75 .. 0.84
   3 !    9.0   0.0   0.00061       1.7       6      31 ..      84     109 ..      78     111 .. 0.82
   4 ?    1.8   0.1      0.12   3.4e+02       1      18 [.     114     131 ..     114     143 .. 0.86
   5 ?   -2.4   0.0       2.7   7.5e+03      21      29 ..     211     219 ..     202     222 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0062
    PF13812.1  2 etyntlitalaksgr...peaAlall 24
                  ty+t i ala+s+    + +Al++l
  MMETSP0890-20130614|28534_1 11 ATYATAIAALARSNTttaWREALRIL 36
                 69***********9966666677776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.081
    PF13812.1  3 tyntlitalaksgrpeaAlalle 25
                 t+ + + +l ++g+p+ A all+
  MMETSP0890-20130614|28534_1 46 TLGATLVCLERCGEPQVAAALLK 68
                 66677888889*******99986 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00061
    PF13812.1   6 tlitalaksgrpeaAlalleeMeqqg 31 
                  +l+  +++ g++  A+ l+++M++ g
  MMETSP0890-20130614|28534_1  84 ILAQRHVEKGSWRTAMGLFRQMQKDG 109
                  456667799**************988 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.12
    PF13812.1   1 vetyntlitalaksgrpe 18 
                  +++y +l+ al+   r+e
  MMETSP0890-20130614|28534_1 114 TRSYCALLEALVAHKRFE 131
                  589*********998876 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 2.7
    PF13812.1  21 lalleeMeq 29 
                  +++l eM q
  MMETSP0890-20130614|28534_1 211 REILQEMLQ 219
                  789999987 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.3   1.2e+04       2      13 ..      12      23 ..      12      24 .. 0.84
   2 ?   -3.1   0.0       3.4   9.3e+03      11      24 ..      55      68 ..      53      73 .. 0.78
   3 !   11.8   0.0   5.9e-05      0.16      10      31 .]      89     110 ..      84     110 .. 0.88
   4 ?    1.0   0.0      0.17   4.6e+02       2      19 ..     116     133 ..     115     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4.3
   PF01535.15  2 tynslIsgycka 13
                 ty + I +++++
  MMETSP0890-20130614|28534_1 12 TYATAIAALARS 23
                 788999999997 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.4
   PF01535.15 11 ckaGkleeAlelfk 24
                  ++G+++ A  l+k
  MMETSP0890-20130614|28534_1 55 ERCGEPQVAAALLK 68
                 58999999998887 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 5.9e-05
   PF01535.15  10 yckaGkleeAlelfkeMkekGv 31 
                  ++ +G ++ A+ lf++M+++G+
  MMETSP0890-20130614|28534_1  89 HVEKGSWRTAMGLFRQMQKDGF 110
                  56789***************97 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.17
   PF01535.15   2 tynslIsgyckaGkleeA 19 
                  +y +l+ +++ ++++e A
  MMETSP0890-20130614|28534_1 116 SYCALLEALVAHKRFEIA 133
                  89***********99977 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.4   2.3e-05     0.063      13      86 ..       9      86 ..       4      88 .. 0.85
   2 ?    0.1   0.1      0.32   8.8e+02      54      54 ..     170     170 ..     100     225 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
    PF13646.1 13 dpevraaaieaLgqlgseealpaLlelL...kdsdpevRraAaeaLgklgdpealpaLlkllddde.davvreaaaea 86
                 ++ + a+ai aL++ ++ +a  + l+ L    ++++ +  a + +L ++g+p++ +aLlk +++ + da + +aa+ a
  MMETSP0890-20130614|28534_1  9 NEATYATAIAALARSNTTTAWREALRILaaaPSKNAQTLGATLVCLERCGEPQVAAALLKSARHKHvDASCYHAAILA 86
                 5667789*********999966666666555689999*************************9996589999999987 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.32
    PF13646.1  54 a 54 
                  a
  MMETSP0890-20130614|28534_1 170 A 170
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.82
# Mc/sec: 1011.15
//
Query:       MMETSP0890-20130614|28543_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    7.2   7.7         14    5.2   5.4    2.1  1  PF07491.6 Protein phosphatase inhibitor


Domain annotation for each model (and alignments):
>> PF07491.6  Protein phosphatase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.4     0.001        14      12      48 ..      92     126 ..      79     154 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.001
    PF07491.6  12 kkkkkrkVrWtedvvDNehmnkkksKiCCIfhkqrsf 48 
                  +++   kV+++++     ++ k++s +CC + ++r+ 
  MMETSP0890-20130614|28543_1  92 RQELLVKVEFKRGL--KTKIIKRSSSCCCCYLPRRRS 126
                  45555677777777..56788***********99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 680.57
//
Query:       MMETSP0890-20130614|28541_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-06   27.1   0.0      6e-06   26.0   0.0    1.7  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.2   2.7e+03      39      63 ..      81     107 ..      60     120 .. 0.69
   2 !   26.0   0.0   4.4e-10     6e-06      33      78 ..     134     179 ..      96     213 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.2
                  CCTTSS-HHHHHHHTT..SBCTEEEEE CS
   PF00254.23  39 vGsgqvikgleegleg..mkvGekrtl 63 
                  ++sg   +++e+g+ g  +k G+ + +
  MMETSP0890-20130614|28541_1  81 LDSGVRYREMEKGINGpqLKLGDSADI 107
                  555555667777777755666666655 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 4.4e-10
                  CEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCT CS
   PF00254.23  33 kpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglag 78 
                  + + +++G+++v  g ee+l g ++G +r++++pp+l++ +++ ++
  MMETSP0890-20130614|28541_1 134 QILRLTLGQKDVPVGVEEALYGASKGTRRRVELPPSLGFASSNWNP 179
                  56789**********************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 709.57
//
Query:       MMETSP0890-20130614|28546_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-10   38.8   0.1    8.1e-10   37.9   0.1    1.4  1  PF08265.6  YL1 nuclear protein C-terminal domain
  ------ inclusion threshold ------
      0.051   13.7   0.5      0.051   13.7   0.4    2.1  3  PF01159.14 Ribosomal protein L6e


Domain annotation for each model (and alignments):
>> PF08265.6  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   1.2e-13   8.1e-10       1      26 [.     131     156 ..     131     158 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.2e-13
    PF08265.6   1 kyCdITGlpAkYrDPkTgLpYanvea 26 
                  k+C +TG pAkY+DP+TgL +a+ +a
  MMETSP0890-20130614|28546_1 131 KICYVTGRPAKYTDPVTGLHFADRHA 156
                  89********************9876 PP

>> PF01159.14  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   7.4e-06     0.051      10      65 ..      12      71 ..       6     112 .. 0.70
   2 ?   -2.6   0.0      0.82   5.6e+03      59      75 ..     185     201 ..     170     205 .. 0.44
   3 ?   -1.8   0.0      0.47   3.2e+03      42      51 ..     228     237 ..     216     258 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.4e-06
   PF01159.14 10 nqrYviaTstkvdisevdvpeklddeyFkkek.kkkkkkseeeffa..ekke.kkelkek 65
                 ++rYv+a  t  +++e+  ++++dd    +e+  ++++++++ef+   +k++ ++++ ++
  MMETSP0890-20130614|28546_1 12 KNRYVVAATTDEELKELRYAARIDDMLGYRENkVTATEEEDDEFLLddDKNQdRTKVPKR 71
                 689**********************87555551555555566777644222223333332 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.82
   PF01159.14  59 kkelkekrkadqkavDk 75 
                  +++ ++k+ +   +vD+
  MMETSP0890-20130614|28546_1 185 QQARSKKKSSSLLKVDQ 201
                  22222333333445554 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.47
   PF01159.14  42 kkkkkkseee 51 
                  kk+kkks++e
  MMETSP0890-20130614|28546_1 228 KKRKKKSDNE 237
                  2333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       613  (0.0448362); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.70
# Mc/sec: 1003.05
//
Query:       MMETSP0890-20130614|28555_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 207.45
//
Query:       MMETSP0890-20130614|28559_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-34  115.0  14.6    9.9e-07   28.3   0.0    7.2  8  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
        8.5    5.8  11.2        1.6    8.1   0.6    4.0  4  PF12657.2  Transcription factor IIIC subunit delta N-term


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.46   3.2e+03       2      22 ..     125     144 ..     124     154 .. 0.76
   2 ?    0.8   0.0     0.068   4.7e+02      17      39 .]     230     250 ..     225     250 .. 0.90
   3 !   18.3   0.3     2e-07    0.0014      13      39 .]     267     293 ..     262     293 .. 0.95
   4 !   16.9   0.0   5.7e-07    0.0039       2      33 ..     298     329 ..     297     333 .. 0.91
   5 !   28.3   0.0   1.4e-10   9.9e-07       4      39 .]     343     378 ..     340     378 .. 0.96
   6 !   26.8   0.0   4.2e-10   2.9e-06       4      39 .]     402     440 ..     399     440 .. 0.93
   7 ?   -3.1   0.0       1.2     8e+03      12      28 ..     454     470 ..     448     473 .. 0.77
   8 !   27.4   0.0   2.7e-10   1.8e-06       4      39 .]     490     525 ..     487     525 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.46
                  EEEEEEESSSSSEEEEEEESS CS
   PF00400.27   2 eckatlrgHtspVtcvafspd 22 
                  e + t ++H +++++ + +p+
  MMETSP0890-20130614|28559_1 125 EEIGTNHEH-HTISAADPDPT 144
                  567788899.99998887775 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.068
                  EEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  17 vafspdgpllasgSrDgtirlWd 39 
                  +++s + ++la + + ++++lW+
  MMETSP0890-20130614|28559_1 230 LSWSST-NILAVALA-NNVYLWN 250
                  799999.9*****99.******7 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 2e-07
                  SEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgSrDgtirlWd 39 
                   Vt+v+++p g++l+ g + + + lWd
  MMETSP0890-20130614|28559_1 267 CVTSVSWAPGGQHLCVGTDSHLVQLWD 293
                  69************************9 PP

  == domain 4    score: 16.9 bits;  conditional E-value: 5.7e-07
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTS CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDg 33 
                  ++++tlrgH++ V ++a++p ++++ sgSrD 
  MMETSP0890-20130614|28559_1 298 TQVQTLRGHSARVGSLAWNPVSRCVNSGSRDA 329
                  5799******************9999999996 PP

  == domain 5    score: 28.3 bits;  conditional E-value: 1.4e-10
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +at rgH+  V+ +a+s dg+ lasg+  + ++lWd
  MMETSP0890-20130614|28559_1 343 VATMRGHQQEVCGLAWSADGSTLASGGNENFLCLWD 378
                  7899*******************************9 PP

  == domain 6    score: 26.8 bits;  conditional E-value: 4.2e-10
                  EEEEESSSSSEEEEEEESS.STEEEEEE..TTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspd.gpllasgS..rDgtirlWd 39 
                    +lr H ++V ++a++p+ ++llasg+  +D+ti+ W+
  MMETSP0890-20130614|28559_1 402 RIILRQHHAAVKALAWCPShRNLLASGGgtADRTIKFWN 440
                  56889999******************************7 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 1.2
                  SSEEEEEEESSSTEEEE CS
   PF00400.27  12 spVtcvafspdgpllas 28 
                  s V+++ +s + + ++s
  MMETSP0890-20130614|28559_1 454 SQVCALLWSRHAKEIVS 470
                  67999999988666666 PP

  == domain 8    score: 27.4 bits;  conditional E-value: 2.7e-10
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + +l+gHt+ V  +a spdg  ++s+ +D t+r W+
  MMETSP0890-20130614|28559_1 490 LCELTGHTARVLHLAQSPDGETVVSAAADETLRFWN 525
                  6789*******************************7 PP

>> PF12657.2  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.22   1.5e+03      24      48 ..      48      76 ..      41     118 .. 0.60
   2 ?    8.1   0.6   0.00023       1.6       6      34 ..     226     254 ..     222     317 .. 0.86
   3 ?    1.5   0.0     0.025   1.7e+02       9      47 ..     355     399 ..     349     422 .. 0.62
   4 ?   -0.2   0.1     0.081   5.5e+02      12      59 ..     505     556 ..     501     575 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.22
    PF12657.2 24 etvhilsvstPe....slskssqetpstl 48
                 ++v++ ++ tP+      s+ +q++p+ +
  MMETSP0890-20130614|28559_1 48 KNVQVSTPTTPNslerIESNNTQQNPTIS 76
                 56677666667633332222222222222 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00023
    PF12657.2   6 spnalsWSeDgqlavatgetvhilsvstP 34 
                  ++n lsWS+ + lava  ++v++ + st 
  MMETSP0890-20130614|28559_1 226 YLNLLSWSSTNILAVALANNVYLWNASTN 254
                  8899******************9855444 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.025
    PF12657.2   9 alsWSeDgqlavatgetvhi.l.....svstPeslskssqetpst 47 
                   l+WS+Dg   +  g+  ++ l     s  +  s ++++  t+s 
  MMETSP0890-20130614|28559_1 355 GLAWSADGSTLASGGNENFLcLwdaarSGVNNTSSHQTNGGTSSF 399
                  689****98877766665552466543222222344555555554 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.081
    PF12657.2  12 WSeDgqlavatgetvhil....svstPeslskssqetpstlnassaqwkitr 59 
                   S+Dg+ +v + ++ ++       s+P+  s+ +++ +s +   +++ ++++
  MMETSP0890-20130614|28559_1 505 QSPDGETVVSAAADETLRfwniFASSPAVSSRHKRPSQSGTSTAGTSTPARS 556
                  5999999999999999845898899999555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.36s 00:00:01.25 Elapsed: 00:00:01.14
# Mc/sec: 1219.02
//
Query:       MMETSP0890-20130614|28572_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.18   11.0   0.0    1.2  1  PF12323.3 Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF12323.3  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.3e-05      0.18      12      33 ..       7      28 ..       5      31 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.3e-05
    PF12323.3 12 tkeQeelLaktfGcaRfvYNka 33
                  keQ+++L  +f +a   YN+ 
  MMETSP0890-20130614|28572_1  7 LKEQQQKLVTHFRAASASYNRL 28
                 59******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.79
# Mc/sec: 215.37
//
Query:       MMETSP0890-20130614|28580_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.70
# Mc/sec: 143.78
//
Query:       MMETSP0890-20130614|28586_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.1   0.1      0.021   14.0   0.1    1.0  1  PF14396.1 Cystic fibrosis TM conductance regulator (CFTR), regulator domain
       0.11   12.4   0.1       0.13   12.1   0.0    1.1  1  PF04746.7 Protein of unknown function (DUF575)


Domain annotation for each model (and alignments):
>> PF14396.1  Cystic fibrosis TM conductance regulator (CFTR), regulator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.1e-06     0.021      57     107 ..      15      68 ..       9      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.1e-06
                  XXXXXX.XXXXXXXXXXXX....XXXXXXXXXXX...XXXXXXXXXXXXXXXXXX CS
    PF14396.1  57 ekrksslilnplasarkfs....lvqkselqangieeesdelserrlslvPeseq 107
                   krk+s i  p+ s r f      v + e++   ie+++d l +rrlsl Pe+++
  MMETSP0890-20130614|28586_1  15 RKRKDS-IGSPVRSRRSFGndagNVARVEKTPMKIEKKEDVLRQRRLSLTPEDKE 68 
                  69****.99*******98622223455556666789999************9864 PP

>> PF04746.7  Protein of unknown function (DUF575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     2e-05      0.13      46      90 ..      27      69 ..      19      78 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2e-05
    PF04746.7 46 kkpeftsdvasivkvekvaGrdhlarveeilkrlrvaieeededk 90
                 ++ +f  d  ++ +vek+    ++ + e++l+++r+++++ed++ 
  MMETSP0890-20130614|28586_1 27 SRRSFGNDAGNVARVEKTPM--KIEKKEDVLRQRRLSLTPEDKEN 69
                 5678999**********975..68999***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.99
# Mc/sec: 205.75
//
Query:       MMETSP0890-20130614|28582_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-36  123.7   0.0    8.1e-35  120.1   0.0    2.0  1  PF00069.20 Protein kinase domain
      3e-34  118.1   0.0      2e-20   72.9   0.0    2.1  2  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.11   11.1   0.0       0.14   10.7   0.0    1.1  1  PF05445.6  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   1.8e-38   8.1e-35      46     256 ..       7     269 ..       3     271 .. 0.88

  Alignments for each domain:
  == domain 1    score: 120.1 bits;  conditional E-value: 1.8e-38
                  HHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH.........HHCCB...-HHHHHHHHHHHHHHHHHHHHT......CEE-S--SGGGEEEE...TT--EEE------EEE.....................................CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC.---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
   PF00069.20  46 vrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk.........kegkl...seeeikkialqilegleylHsn......giiHrDLKpeNiLld...kkgelkiaDFGlakkl.....................................eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyellt.gklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                  ++E+++l +lsHpni+++l+v + +   + +le++ + d+++ll+         ++  l     e   ++++ ++ +++ylHs        ++HrD+KpeN+Ll    ++++lk+aDFGla  l                                     +  + +lt  +gt +YmAPEv + +++y+ ++Dv+s++v+ +e+l  g  pfsg +  ++++++  + ++++  +e++     ++l++li+  ++++p++R+ +  i++
  MMETSP0890-20130614|28582_1   7 QKEINMLSRLSHPNIISVLGVGHYDGLPCALLEWCST-DVNTLLRiaecdqrkiRKHILtkyPSEYRLRLVRDLAHAVRYLHSGsaipgcFVLHRDIKPENLLLLdadNDHSLKLADFGLAVGLavptqeleqrkskqntseneagtqepvqteslfrhgdTLADYELTAETGTLRYMAPEVAR-RENYGLRADVYSFAVVAWEILVvGGKPFSGLHVGEHYNRVVVRGHRPNIPKEWH-----PDLQNLITAAWHHNPRRRPPFSAICN 269
                  35*********************************99.6676777777877766333334558888999**************88999999***********98523367777********998************************************9999********************.*******************876699******88888888887777776666553.....69*****************9999987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   4.7e-15   2.2e-11      46     154 ..       4     131 ..       2     150 .. 0.80
   2 !   72.9   0.0   4.4e-24     2e-20     165     259 .]     176     271 ..     159     271 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 4.7e-15
                  HHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..........GTTGSBHHHHHHHHHHHHHHHHHHHHTT......EEEST-SGGGEEEET...TTEEEE-----CEES.T CS
   PF07714.12  46 eefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..........ekekltlkdllkfalqiakGmeyLeskk......lvHrdLaarNvLlee...ekvvkisDfGLardi.e 154
                  ++f++e++++++l+hpni+++lgv   ++  + ++e+++  d++++Lr              +k   +  l+++ ++a++++yL+s +      ++Hrd+   N Ll +   ++  k++DfGLa  +  
  MMETSP0890-20130614|28582_1   4 SSFQKEINMLSRLSHPNIISVLGVGHYDGLPCALLEWCST-DVNTLLRIAecdqrkirkhILTKYPSEYRLRLVRDLAHAVRYLHSGSaipgcfVLHRDIKPENLLLLDadnDHSLKLADFGLAVGLaV 131
                  589***********************88989*******86.77888877777788887666777888899****************9856665567*********997655477*********987742 PP

  == domain 2    score: 72.9 bits;  conditional E-value: 4.4e-24
                  -EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
   PF07714.12 165 aklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvekl 259
                  ++  +++mapE+ +++++  ++Dv+sf v+ wEi+  g +p++gl+  e ++++  +g+r + p++++++l++l++  w+++p++Rp f++++++l
  MMETSP0890-20130614|28582_1 176 ETGTLRYMAPEVARRENYGLRADVYSFAVVAWEILVVGGKPFSGLHVGEHYNRVvVRGHRPNIPKEWHPDLQNLITAAWHHNPRRRPPFSAICNML 271
                  556799***************************************99999998889************************************9876 PP

>> PF05445.6  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.1e-05      0.14     300     324 ..      97     121 ..      48     126 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.1e-05
    PF05445.6 300 FlHvDlkPdniLvFdskeelvikvk 324
                   lH D+kP+n+L+ d +++ ++k++
  MMETSP0890-20130614|28582_1  97 VLHRDIKPENLLLLDADNDHSLKLA 121
                  58**************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.44s 00:00:01.04 Elapsed: 00:00:00.80
# Mc/sec: 934.58
//
Query:       MMETSP0890-20130614|28585_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-06   25.7   0.0     0.0073   16.1   0.0    2.6  2  PF11699.3 Mif2/CENP-C like
  ------ inclusion threshold ------
       0.14   11.5   0.0        0.3   10.5   0.0    1.5  1  PF07883.6 Cupin domain


Domain annotation for each model (and alignments):
>> PF11699.3  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00091       6.3      14      41 ..     264     291 ..     253     304 .. 0.88
   2 !   16.1   0.0   1.1e-06    0.0073      51      82 ..     320     352 ..     318     354 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00091
                  E-EEEE-S---EEEEE--SEEEEEEEEE CS
    PF11699.3  14 sGilkLppgaeKkpknskkatlvFfVik 41 
                  sG l +pp a+K ++++   + vFfV  
  MMETSP0890-20130614|28585_1 264 SGQLIMPPRAIKDEESVGLCSQVFFVAS 291
                  8*************************75 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.1e-06
                  EEEEE----EEEE-TT-EEEEEE--.---EEEE CS
    PF11699.3  51 tsFvigkgsvfqvPrgneysiaNkg.nkearlf 82 
                   +F++++g++f +P  n y i+N++  + a++f
  MMETSP0890-20130614|28585_1 320 VRFLLAPGDQFHIPPNNMYRIENRStTQLAKIF 352
                  579********************9934456666 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.3e-05       0.3      38      66 ..     321     350 ..     316     355 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.3e-05
                  EEEE-TT-EEEE-TT-EBEEB--SSS.-EE CS
    PF07883.6  38 eveleaGdsvyfpagtpHrfrNtgde.par 66 
                  ++ l +Gd +++p++   r++N++++  a+
  MMETSP0890-20130614|28585_1 321 RFLLAPGDQFHIPPNNMYRIENRSTTqLAK 350
                  56799*******************984444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       745  (0.0544909); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.93
# Mc/sec: 1159.53
//
Query:       MMETSP0890-20130614|28612_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.70
# Mc/sec: 246.48
//
Query:       MMETSP0890-20130614|28613_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-13   49.7  56.3    1.4e+04   -7.7  39.0    3.5  1  PF04886.7 PT repeat
  ------ inclusion threshold ------
          3    8.4   5.0         83    4.0   0.1    3.5  3  PF12798.2 4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.7  39.0         2   1.4e+04       2      35 ..      39      72 ..       2      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: -7.7 bits;  conditional E-value: 2
    PF04886.7  2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                 pT  Pt+ PT+ PT++Pt+ PT  Pt++Pt+ Pt
  MMETSP0890-20130614|28613_1 39 PTGDPTSIPTTSPTNAPTDMPTVTPTSSPTALPT 72
                 6777777777777777777777777777777776 PP

>> PF12798.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.012        83      10      15 .]      17      22 ..      16      22 .. 0.83
   2 ?    3.8   0.1     0.014        95      10      15 .]      29      34 ..      28      34 .. 0.88
   3 ?    0.8   0.1      0.12   8.4e+02      10      13 ..      73      76 ..      72      78 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.012
    PF12798.2 10 vCPtgA 15
                 +CPtg+
  MMETSP0890-20130614|28613_1 17 ACPTGI 22
                 9***95 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.014
    PF12798.2 10 vCPtgA 15
                 +CPt+A
  MMETSP0890-20130614|28613_1 29 ACPTKA 34
                 8***98 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.12
    PF12798.2 10 vCPt 13
                 +CP+
  MMETSP0890-20130614|28613_1 73 ACPS 76
                 8997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 375.43
//
Query:       MMETSP0890-20130614|28614_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.4   0.0    1.6e-16   59.9   0.0    1.2  1  PF00782.15 Dual specificity phosphatase, catalytic domain
  ------ inclusion threshold ------
      0.011   14.9   0.0      0.016   14.4   0.0    1.3  1  PF00102.22 Protein-tyrosine phosphatase
      0.091   12.9   0.0        0.2   11.7   0.0    1.5  1  PF13350.1  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.5e-20   1.6e-16       1     127 [.      89     225 ..      89     231 .. 0.92

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 3.5e-20
                  EEE--CTCHC.HHHHHH----EEEETTSSSSEEECCTT---EEEE-----........STT--CGGGHHHHHH.HHHHHCC----EEEE-----HHHHHHHHHHHHHHCT-HHHHHHHHHHHHSTT-SS-STTHHHH CS
   PF00782.15   1 lylgskstas.lalleklgitlvinvtkevpknnadkkseieylripved........etetkiskeleeave.fiekaeqkgkkvlVHCqaGisRSatliiaYlmktknlslneAyefvkerrskispnagflrqL 127
                  ly+g++++a  +++l   +i  ++n+++e + n++ ++++++y r pv          ++ ++i  ++e+     ie+a ++g++vlVHC aG+ R +t+ +  +m++ +++++ A+++ k +r+++ p   +l  L
  MMETSP0890-20130614|28614_1  89 LYIGNQTAARsESVLIGENIFDIVNCQDEHSTNFFENDTRFRYCRFPVSKwfryveniDSHDDILHFFENGCHiWIENALANGRNVLVHCLAGAHRAGTVGVSMMMRQGHFDVQTAIRLAKFQRPIVDPFGPLLDLL 225
                  79******99999******************99999**********************99999*****9865516****************************************************9986666555 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.5e-06     0.016     168     194 ..     169     195 ..     107     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.5e-06
                  TTSS-EEEES------HHHHHHHHHHH CS
   PF00102.22 168 aksgpvvVhCsaGvgRtgtfvaldill 194
                  a+  +v+VhC aG+ R+gt+ +  ++ 
  MMETSP0890-20130614|28614_1 169 ANGRNVLVHCLAGAHRAGTVGVSMMMR 195
                  56789**************76655543 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.4e-05       0.2     109     146 ..     156     193 ..     136     204 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.4e-05
    PF13350.1 109 akkayravlealaeeegpvlfHCtaGKDRTGvvaalll 146
                   ++ ++  +e  +++ + vl+HC aG  R+G v + ++
  MMETSP0890-20130614|28614_1 156 FENGCHIWIENALANGRNVLVHCLAGAHRAGTVGVSMM 193
                  55666677788888899**************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       428  (0.0313049); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.42s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 944.11
//
Query:       MMETSP0890-20130614|28617_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:00.56
# Mc/sec: 2068.43
//
Query:       MMETSP0890-20130614|28635_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-08   31.6   0.1    0.00025   20.0   0.1    2.7  2  PF00036.27 EF hand
    2.6e-06   26.4   0.2      0.007   15.5   0.1    2.8  2  PF13202.1  EF hand
    4.4e-06   26.6   5.7    5.7e-06   26.2   0.3    2.6  2  PF13499.1  EF-hand domain pair
    1.6e-05   24.3   0.2    3.6e-05   23.1   0.1    1.7  1  PF13833.1  EF-hand domain pair
    5.6e-05   22.5   2.9      0.079   12.7   0.1    3.0  3  PF13405.1  EF-hand domain
  ------ inclusion threshold ------
       0.17   11.9   0.7        4.3    7.4   0.0    2.4  2  PF09550.5  Conserved hypothetical phage protein (DUF2376)


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00041      0.93       9      29 .]     249     269 ..     247     269 .. 0.88
   2 !   20.0   0.1   1.1e-07   0.00025       2      28 ..     281     307 ..     280     308 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00041
                  HCTTTSSEBEHHHHHHHHHHH CS
   PF00036.27   9 fDkDgdGkIsfeEfkealkkl 29 
                   D  +dG++s+ E+ + l++l
  MMETSP0890-20130614|28635_1 249 WDISKDGTLSVHELYTGLRSL 269
                  5999**********9999875 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.1e-07
                  HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                  l+ ++k fD + dG++s++Efk++l++
  MMETSP0890-20130614|28635_1 281 LDLLIKRFDCNDDGHLSLQEFKAFLHS 307
                  67789*******************986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00075       1.7      12      23 ..     253     264 ..     250     267 .. 0.84
   2 !   15.5   0.1   3.1e-06     0.007       6      25 .]     286     305 ..     281     306 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00075
                  ----B-HHHHHH CS
    PF13202.1  12 gDGkIsreELkr 23 
                  +DG++s  EL++
  MMETSP0890-20130614|28635_1 253 KDGTLSVHELYT 264
                  8*********98 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.1e-06
                  HHH--S----B-HHHHHHHH CS
    PF13202.1   6 rafDlNgDGkIsreELkrlv 25 
                  ++fD N DG +s +E+k+++
  MMETSP0890-20130614|28635_1 286 KRFDCNDDGHLSLQEFKAFL 305
                  789**************974 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.074   1.7e+02      16      53 ..     118     154 ..     116     186 .. 0.76
   2 !   26.2   0.3   2.5e-09   5.7e-06      10      65 ..     250     304 ..     247     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.074
    PF13499.1  16 yldkeeLlrllkhlgsels.....deevrevldyifkelDkng 53 
                  +ld++ Ll++ ++l  +l+     +++++e+      ++D++ 
  MMETSP0890-20130614|28635_1 118 KLDQAALLKANQNLRKQLIedssmNKSKQEE------KFDHDE 154
                  7999999999999998888655543333333......444443 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 2.5e-09
    PF13499.1  10 DkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  D ++dg+l++ eL   l+ lgs   d+  r+ ld ++k++D n dG ls++Ef ++
  MMETSP0890-20130614|28635_1 250 DISKDGTLSVHELYTGLRSLGSAF-DSLARDDLDLLIKRFDCNDDGHLSLQEFKAF 304
                  889******************886.78888888999*****************987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.6e-08   3.6e-05       1      51 [.     253     305 ..     253     308 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.6e-08
    PF13833.1   1 ekGlItreeLkralallglkg.......lseeevdilfrefDtdgdGkisfeEFcvll 51 
                  ++G ++ +eL+  l+     +       l  +++d l++ fD ++dG +s+ EF+++l
  MMETSP0890-20130614|28635_1 253 KDGTLSVHELYTGLR-----SlgsafdsLARDDLDLLIKRFDCNDDGHLSLQEFKAFL 305
                  58999*******665.....44457899***************************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.3   7.5e+03       8      14 ..     149     155 ..     148     157 .. 0.78
   2 !    9.0   0.0   0.00053       1.2       9      31 .]     249     270 ..     247     270 .. 0.90
   3 !   12.7   0.1   3.5e-05     0.079       7      27 ..     286     306 ..     281     313 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.3
                  CC----- CS
    PF13405.1   8 lfDkdgd 14 
                  +fD+d d
  MMETSP0890-20130614|28635_1 149 KFDHDED 155
                  7999987 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00053
                  C-------B---HHHHHHH.H-- CS
    PF13405.1   9 fDkdgdGkidaeELrdaLrkslg 31 
                   D  +dG+++ +EL   Lr slg
  MMETSP0890-20130614|28635_1 249 WDISKDGTLSVHELYTGLR-SLG 270
                  6889**************9.887 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 3.5e-05
                  GCC-------B---HHHHHHH CS
    PF13405.1   7 klfDkdgdGkidaeELrdaLr 27 
                  k fD + dG ++++E++++L+
  MMETSP0890-20130614|28635_1 286 KRFDCNDDGHLSLQEFKAFLH 306
                  68*****************98 PP

>> PF09550.5  Conserved hypothetical phage protein (DUF2376)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.068   1.5e+02      12      35 ..      69      94 ..      69     102 .. 0.89
   2 ?    7.4   0.0    0.0019       4.3      13      41 ..     259     288 ..     256     289 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.068
    PF09550.5 12 TPaELaallgaea.ga.apldRaeLd 35
                 T+ EL+ l+++++ +   p+ R++L 
  MMETSP0890-20130614|28635_1 69 TLNELQTLRPLRTvAKeLPVLRGKLR 94
                 899**********9877999999885 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0019
    PF09550.5  13 PaEL.aallgaeaga.apldRaeLdaLmrrf 41 
                  + EL + l+ + ++a  +l R++Ld L++rf
  MMETSP0890-20130614|28635_1 259 VHELyTGLRSL-GSAfDSLARDDLDLLIKRF 288
                  55664444433.33679*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1087  (0.0795056); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.73
# Mc/sec: 1119.39
//
Query:       MMETSP0890-20130614|28642_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   13.7   0.0      0.029   13.5   0.0    1.1  1  PF14023.1 Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> PF14023.1  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.2e-06     0.029     155     207 ..       3      56 ..       1      58 [. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-06
    PF14023.1 155 lle....llvilnknqlphliaillfalvavyvlfllfdLnkPFsGvyqikrsavtq 207
                  lle    +l +l+++ql++l+aill++   ++vl    dLn+ ++G ++i++  v q
  MMETSP0890-20130614|28642_1   3 LLEsdqeVLRFLDAIQLRILWAILLGVECGLAVLIT--DLNDLYRGGFCITAV-VAQ 56 
                  5555566999****************8777777666..************987.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.88
# Mc/sec: 236.91
//
Query:       MMETSP0890-20130614|28640_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.34s 00:00:00.73 Elapsed: 00:00:01.07
# Mc/sec: 313.54
//
Query:       MMETSP0890-20130614|28634_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-35  121.0   0.0    5.1e-35  120.8   0.0    1.1  1  PF02096.15 60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> PF02096.15  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   3.7e-39   5.1e-35      39     194 ..       1     178 [.       1     180 [. 0.93

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 3.7e-39
   PF02096.15  39 ikeiqekykedkqklqqemmklykeegvnplsgclplLiqlPilfalyrvlrnlaelrsleeasflwiedLsapda........................lipllilpilagltlflsqklssksqkskdkqaaaqqkimnyimplmflfiflsfPaglllYwvvsnlfqilqqlllnke 194
                  +++i+e+y+ed+++++ ++ kly+    npl+gclp++ q+P++++lyr + nl  ++++ +++f+w+++L  p                          ++ +l++pi++++t+ ls+++++   +++d+ a ++q+i++ ++plm++++++++Pagl+lYw++snl++++  + ++ +
  MMETSP0890-20130614|28634_1   1 MEKIKERYAEDQTAQNIATAKLYEMSATNPLAGCLPSIAQIPVFIFLYRSVLNL-AFENELNEPFFWLPSLEGPTFdagrgigwltenwvdgtpslgwhdTLCYLLVPIALVITQSLSMQIMQPPVDPNDEGAVRTQRILK-YLPLMIGWFSANVPAGLGLYWMTSNLVSVGSSVATKAY 178
                  89**************************************************95.558889**********99988889999999999999999999999999******************66545999999999999999.8***************************9998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.86
# Mc/sec: 822.01
//
Query:       MMETSP0890-20130614|28659_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.41s 00:00:01.22 Elapsed: 00:00:01.01
# Mc/sec: 1207.67
//
Query:       MMETSP0890-20130614|28677_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-37  129.6   0.0    1.8e-37  129.3   0.0    1.0  1  PF01593.19 Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.073   11.8   0.0       0.11   11.2   0.0    1.2  1  PF07507.6  WavE lipopolysaccharide synthesis


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   2.6e-41   1.8e-37     125     450 .]      11     354 ..       2     354 .. 0.95

  Alignments for each domain:
  == domain 1    score: 129.3 bits;  conditional E-value: 2.6e-41
                  HHHHCHCTHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEET.......SCEEEEEECSS..EEEESEEEE-S-HHHCCCSEEES-EEHHHHHHH.HHSEEE-EEEEEEEESSCCSGGT-....................CEECEECCCS..CCS-EEEEECECCCCC.HCCSEEEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH.SSB--SEEEEEETTTSTTT---ECCHBHHHHHHHHHHHHS-BBSSEEE--GTT-TTTTTS---TTT---HHHHHHH CS
   PF01593.19 125 alesglllaepellelalesfssllsaqgflersleslfralldgalgflefensarlallslklndqeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkeg.......dgvtvttedgr..tykaDaVvvTlplgvlkkilflPplpdakqeai.rrlgfgsvnkvileferpfwpenl....................dlfgllvsds..asrgelvldwskssgs.pkrpvllsyvlgdaareleslsdeellervledLrkllgnedvpdpkdtvvtrWstdplargsysyvsvgssgddrpalaepvgprlffAGehtsrgypgtveGAvlSGlraAaril 450
                  +++ ++++ ++ ++ l++ +f +++++ g++  s+++++ a+ +++++++++e+sar++l+++ l++ +++ ++  +++  +p+ yl++++ +++  +  +v l+  V+++ ++         +v  + + g+    ++Da++++++++  k  ++lP+  + k   + + + +  v+  +++++++ w ++                     + ++ll+s++  +s++++   +s+++++ p+ + l++ v+   a    + s+ ++++ ++ +++ l++  ++ d +   +t+ s+++l ++ y   +  +   +rp++a+p+ +++f+AG++t ++y  ++eGA  SGl +A++i+
  MMETSP0890-20130614|28677_1  11 RALIDFDGGMDMVRNLDDITFTEWFMSKGGSRGSIDRMWEAIAYALGFIGCDEISARCMLTIFMLFAIRTEASVLRMLD-GSPQTYLHDPILKYLDDRNVKVNLRSAVRELIHDIdndtgmpTRVSGIHVSGEstPRTFDAIICACDVPGTK--KLLPASFR-KIPIFdNIYQLDCVPIATVQMRFDGWITEMqdvekmrilkgeefadgrapGIDNLLYSNDaeFSCFADLALTSPAEYYkPNEGSLMQCVMDSRA---FERSEAQIVQDCVNQIKLLFP--SAKDLT---CTWSSVVKLGQSLYREKPGQDK--YRPSQATPI-SNFFLAGSYTYQDYIDSMEGATKSGLMVADEII 354
                  566788899999*******************************************************************.******************************87766678899988888888888886778*************..********.999999**************************************************************************************99...99999***************9..566666...99********************..*********.7******************************97 PP

>> PF07507.6  WavE lipopolysaccharide synthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.6e-05      0.11      16      45 ..     266     295 ..     255     318 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.6e-05
    PF07507.6  16 eqekgitkkclasirthlPgaeiIlSTWeg 45 
                  ++e++i++ c++ i+  +P a+ +  TW  
  MMETSP0890-20130614|28677_1 266 RSEAQIVQDCVNQIKLLFPSAKDLTCTWSS 295
                  789*************************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.60
# Mc/sec: 1521.69
//
Query:       MMETSP0890-20130614|28690_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    9.3  27.7       0.27    8.9  19.2    1.1  1  PF04147.7 Nop14-like family
       0.22   10.9  36.7      0.073   12.5  23.3    1.7  2  PF05764.8 YL1 nuclear protein
       0.25   10.4  24.5       0.34   10.0  17.0    1.1  1  PF05285.7 SDA1
       0.31    8.8   4.3       0.37    8.6   3.0    1.1  1  PF08728.5 CRT10
       0.47    9.3  28.9       0.68    8.8  20.0    1.2  1  PF09073.5 BUD22
       0.99    7.2  17.0        1.7    6.4  11.8    1.5  1  PF02724.9 CDC45-like protein
        1.9    6.6   3.8        2.2    6.4   2.7    1.1  1  PF09531.5 Nucleoporin protein Ndc1-Nup
        3.8    5.3   9.8        4.4    5.1   6.8    1.3  1  PF05327.6 RNA polymerase I specific transcription initiation factor RRN3


Domain annotation for each model (and alignments):
>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  19.2   0.00016      0.27     325     420 ..     106     222 ..      83     245 .. 0.40

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00016
    PF04147.7 325 denfglgsaeeeeeeee.......eegvededeeeddddee..........eeeedvdedeeeedeedeesddeeeeeeeee.......aseeeaeakkkkkktkkkkksaeetkeelpf 420
                  + ++ l+++eeee++ +       +   +d+d+++dd+d +            e+d+ ed +++d++d+++ de+eeee+ e       a+e+++ + k ++++++kkk++eet ++ p+
  MMETSP0890-20130614|28690_1 106 EPKMSLSRDEEEETQLArkmlgdsRLVDDDSDDDSDDEDFVdpkqmknefgF-EQDE-EDLDDSDDDDSSEADEDEEEEK-EvptavvkANEKRKSEMKPTAEPASKKKKSEETPSSTPV 222
                  2233333222222222234443222222333333333333355444332211.1111.1111111111111111111111.124444432222222233334444444444444444443 PP

>> PF05764.8  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   6.1      0.98   1.7e+03      43      83 ..     101     150 ..      92     154 .. 0.69
   2 ?   12.5  23.3   4.3e-05     0.073      40     127 ..     136     236 ..     108     264 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.98
    PF05764.8  43 eedDeefeeeeeeeeeee.........Dsdfddseddeeesddeeegeke 83 
                  e++D+e +++ +++eeee         Ds + d+++d+ ++d++   +k+
  MMETSP0890-20130614|28690_1 101 EKNDKEPKMSLSRDEEEEtqlarkmlgDSRLVDDDSDDDSDDEDFVDPKQ 150
                  55666666665555555567999999999998888877666666666665 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 4.3e-05
    PF05764.8  40 feEeedDeefeeeeeeeeeee....Dsdfddsedd.eeesddeeegekele.keekekkkkrkkkkaykeplkkkkkkkkkaak.......kkkaaaeekk 127
                    +++dDe+f++ ++ ++e+     ++d+dds+dd ++e+d++ee+eke      k++ k++  +k + ep++kkkk+++++++        ++++++++k
  MMETSP0890-20130614|28690_1 136 SDDDSDDEDFVDPKQMKNEFGfeqdEEDLDDSDDDdSSEADEDEEEEKEVPtAVVKANEKRKSEMKPTAEPASKKKKSEETPSStpvskpaIQDDSTPAEK 236
                  4678999****9999999988999899*****9997777777777777776844444444448999999***9***9999988866555542222222222 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  17.0    0.0002      0.34      62     182 ..      78     214 ..      68     243 .. 0.41

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
    PF05285.7  62 eevvtgIeGlElLekdkeeekkkk....eeeegleseedddee..........WdvdsdeededeDe.......egewvdvesdeee.essDsedeeeeseeeeeeeesekkkkeesdeekseeeeeeaaeeeeeeakeekis 182
                  +++v +I+G  ++ ++  + ++ +    e + +l+ +e+++++            vd+d++d+++De        +++   e+dee+ ++sD++d +e +e     +e+e+k+  +   +++e+ ++e + + e ++k++k +
  MMETSP0890-20130614|28690_1  78 KNAVVHISGYMVIPQNVTQYEEPEkndkEPKMSLSRDEEEETQlarkmlgdsrL-VDDDSDDDSDDEdfvdpkqMKNEFGFEQDEEDlDDSDDDDSSEADE-----DEEEEKEVPTAVVKANEKRKSEMKPTAEPASKKKKSE 214
                  566666666666655443333333100133333333333333355555544421.3333333333332242222122222233333333444444333322.....2222222222222222222222222222222222222 PP

>> PF08728.5  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.0   0.00022      0.37     374     496 ..      87     215 ..      54     260 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00022
    PF08728.5 374 yevvrekkvlvky...kvdlddck...kekrkntyadeklgkekleedkkkvrekesswqeesgaklqeekdykekklnsqdleesleierkvsdnievladlsvliskdkteklkqieilelelestk 496
                  y+v++++ +++++   + +++++    +e    + a + lg+ +l +d ++  + ++ + + +++k ++ ++  e +l+  d + s+e +++ +++ ev ++     +k k e+++++e+ + +++s +
  MMETSP0890-20130614|28690_1  87 YMVIPQNVTQYEEpekNDKEPKMSlsrDEEEETQLARKMLGDSRLVDDDSDDDSDDEDFVDPKQMKNEFGFEQDEEDLDDSDDDDSSEADEDEEEEKEVPTAVVKANEKRKSEMKPTAEPASKKKKSEE 215
                  4444444444432110223333321113344444567889********99999999999999999*************************************************999999887766544 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  20.0    0.0004      0.68     172     279 ..     101     226 ..      78     256 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0004
    PF09073.5 172 eeessesedssddeeseed.............dsdsdeeeesdse.dlsqydallvsssdeesgeeq...desddeeesesesesdeedeedsdsrsvsdseeseppskkaKkkka.ktsstfLPs 279
                  e++++e + s +++e+ee+             d+dsd ++++++  d +q+ ++ + ++dee+ +++   d+s+++e++e+e+e   +  +  ++r++   ++ ep skk+K+++  +++ + +P+
  MMETSP0890-20130614|28690_1 101 EKNDKEPKMSLSRDEEEETqlarkmlgdsrlvDDDSDDDSDDEDFvDPKQMKNEFGFEQDEEDLDDSdddDSSEADEDEEEEKEVPTAVVKANEKRKSEMKPTAEPASKKKKSEETpSSTPVSKPA 226
                  222222222222222222234444566566557777777777776888888888888888887777644334444555555555555555556666666666666778887777756666666665 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  11.8     0.001       1.7     126     196 ..     113     201 ..      80     251 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.001
    PF02724.9 126 emkeeee............eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl......akslrrrrrr 196
                  +++eee              ++d+d+ds+d++  ++++ +++   e+de++ dd+d++d++e+ + +++e++       a+++r+++++
  MMETSP0890-20130614|28690_1 113 RDEEEETqlarkmlgdsrlVDDDSDDDSDDEDFVDPKQMKNEFGFEQDEEDLDDSDDDDSSEADEDEEEEKEVptavvkANEKRKSEMK 201
                  22222223444444444444444445554444445555544444555555555555444444444444443335566543333333322 PP

>> PF09531.5  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.7    0.0013       2.2     388     476 ..     163     282 ..      90     293 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0013
    PF09531.5 388 l........................srlaeppkeesasaqspkakrrrekleevnksapssalsapsspsaeskakdkkassiitkiqsklelaqvlkkl............qikkflssivgil 476
                  +                        +  +   k++s  +++ +++++++k    +++++s ++s+p  +  +++a ++++++++t ++++ +  + l+k+            + k fl+++ +++
  MMETSP0890-20130614|28690_1 163 DlddsddddsseadedeeeekevptAVVKANEKRKSEMKPTAEPASKKKK---SEETPSSTPVSKPAIQDDSTPAEKDYKEQLVTFLKKEGK--SPLSKIgsecrkpkdvrgKLKTFLQRFTEVF 282
                  04444444433333344444333331122222222223333333333222...455666666666666666666666888888888888777..3444446668888888888888888887774 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.8    0.0026       4.4     214     269 ..     134     195 ..     108     279 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0026
    PF05327.6 214 lDvelqvelddlddeeeeellaeeeeeeeeelfdlddddseeesvesedeedee..........ak 269
                   D     + d  d++  +  + ++e   e++ +dldd d++++s+ +edee+e+          +k
  MMETSP0890-20130614|28690_1 134 DDS--DDDSD--DEDFVDPKQMKNEFGFEQDEEDLDDSDDDDSSEADEDEEEEKevptavvkanEK 195
                  333..11111..222222222333333445555555555555555556655555456666655522 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1005  (0.0735079); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:00.94
# Mc/sec: 749.50
//
Query:       MMETSP0890-20130614|28702_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 389.41
//
Query:       MMETSP0890-20130614|28705_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-27   94.9   0.0      8e-27   93.7   0.0    1.5  1  PF06485.6 Protein of unknown function (DUF1092)


Domain annotation for each model (and alignments):
>> PF06485.6  Protein of unknown function (DUF1092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   5.9e-31     8e-27     126     270 .]      22     183 ..       3     183 .. 0.80

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 5.9e-31
    PF06485.6 126 tppqpLPealrGdkwafaslpagelreasew...piefge..............llplklgladd......tliPGlvlfskrralaLAaWlsglepvslkvekkesqLiLeaglddrwllatledeeakeeakkfeeakekakglhFlavq.sdpeeetfaGfWlLrd 270
                   ++ +LP+ lrG+++af++lp++e+         ++ +g               l pl+     +      +++PG+++ s+ r+ +LA  l   e+++++ +++++qL+L+ gldd++lla+l de  + ea +f++ak++ +glhF+ vq +d++e + aGfWlLrd
  MMETSP0890-20130614|28705_1  22 GAASRLPDGLRGEQYAFVTLPLSEFLPGGGVtsdNVGVGRlidaaeilqlnnpdLSPLD-----NcedissINVPGVAILSR-RSEPLAMSLTAIELAAVRADSSTRQLVLDVGLDDSYLLARL-DEGQRDEAAAFDKAKSQLNGLHFVVVQrPDDDEVAPAGFWLLRD 183
                  57899*******************97654332225555553343444444444444444.....04444559**********.**********************99*****************.667788899*****************9346667788******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.54
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|28709_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   45.1   0.1    7.4e-12   44.4   0.1    1.3  1  PF12928.2 tRNA-splicing endonuclease subunit sen54 N-term
  ------ inclusion threshold ------
      0.081   12.3   0.1       0.17   11.3   0.1    1.6  1  PF02778.9 tRNA intron endonuclease, N-terminal domain


Domain annotation for each model (and alignments):
>> PF12928.2  tRNA-splicing endonuclease subunit sen54 N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   1.1e-15   7.4e-12      14      67 ..      33      85 ..      23      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.1e-15
    PF12928.2 14 knlivaiyapedscveVtnpkGkhfktmGradrkgkvwLlpeEalYLlErGsld 67
                  ++ v ++++e+   +V +++Gk++k++G + + +++wL+peE l+L+ErG+++
  MMETSP0890-20130614|28709_1 33 GSKAVVVWDKEKLQGKVVRHRGKMLKSIG-YVQGTETWLYPEELLFLAERGQCT 85
                 5678899**********************.*********************987 PP

>> PF02778.9  tRNA intron endonuclease, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.5e-05      0.17       7      67 .]      34      99 ..      29      99 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
                 TTEEEES-TH.....HHHTT----.......B----EEEEHHHHHHHHH---B--T....T--HHHHH CS
    PF02778.9  7 gdrVlvedeeaakr.lyergfYGrp......kddepLqLslvEAlYLlerGcLevkedgeplsfeell 67
                 +  V+v+d+e+ +  + + +  G++       ++ +  L ++E l+L+erG  + + d+e++s+++l+
  MMETSP0890-20130614|28709_1 34 SKAVVVWDKEKLQGkVVRHR--GKMlksigyVQGTETWLYPEELLFLAERGQCTAVVDDERISVKDLY 99
                 56778887666554466666..666666666777778899**********887777799999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 853.25
//
Query:       MMETSP0890-20130614|28727_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-09   36.9   0.0    7.2e-09   35.7   0.0    1.6  1  PF12796.2  Ankyrin repeats (3 copies)
    1.9e-07   30.4   0.0     0.0084   15.7   0.0    2.8  2  PF00023.25 Ankyrin repeat
    5.5e-07   29.1   0.1      0.013   15.5   0.0    3.8  4  PF13606.1  Ankyrin repeat
    6.5e-06   26.4   0.0    1.9e-05   24.9   0.0    1.8  2  PF13637.1  Ankyrin repeats (many copies)
    7.5e-05   22.7   0.0     0.0051   16.9   0.0    2.6  2  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.6e-12   7.2e-09      25      86 ..      75     141 ..      53     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.6e-12
    PF12796.2  25 l..get...pLhlAaeagnleivklLleagadvnakdkegntpLhlAvr.nghlelvklLlekgadvn 86 
                     ++t   pL++A+++++++++k+ l++++d+n k ++g+tpLh A++ +++  + ++Lle+ a v+
  MMETSP0890-20130614|28727_1  75 EvsKDTgfsPLFAAIDRNDIKTLKWCLQNNCDPNVK-ADGKTPLHQAMKwYKESRITRVLLEYAATVD 141
                  122344777*************************98.8*********99577789999****998887 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06    0.0084       2      31 ..      81     110 ..      80     111 .. 0.96
   2 !   11.9   0.0   5.1e-05      0.14       1      29 [.     112     141 ..     112     145 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.1e-06
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  Gf+PL  A+ r++++ +k+ l++++d+n++
  MMETSP0890-20130614|28727_1  81 GFSPLFAAIDRNDIKTLKWCLQNNCDPNVK 110
                  9***************************86 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.1e-05
                  TSCBHHHHHHHTT.HHHHHHHHHHTTSSTT CS
   PF00023.25   1 dGfTPLHlAalrg.nlevvklLlsqGAdln 29 
                  dG TPLH A ++    ++ + Ll++ A ++
  MMETSP0890-20130614|28727_1 112 DGKTPLHQAMKWYkESRITRVLLEYAATVD 141
                  8***********999999999999988877 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.74     2e+03       3      12 ..       4      13 ..       2      19 .. 0.86
   2 !   15.5   0.0   4.8e-06     0.013       2      29 ..      81     108 ..      80     109 .. 0.95
   3 !    7.9   0.0    0.0014       3.9       1      28 [.     112     140 ..     112     142 .. 0.81
   4 ?    0.1   0.0      0.46   1.3e+03       4      14 ..     150     161 ..     147     180 .. 0.57

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.74
    PF13606.1  3 nTpLhlAasn 12
                 +T+L +++ n
  MMETSP0890-20130614|28727_1  4 RTFLLCVCAN 13
                 7999999987 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4.8e-06
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  G +pL+ A+ ++ i+ ++++l+n +d+n
  MMETSP0890-20130614|28727_1  81 GFSPLFAAIDRNDIKTLKWCLQNNCDPN 108
                  889***********************99 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0014
    PF13606.1   1 nGnTpLhlAas.ngrielveaLlengadi 28 
                  +G TpLh A++ ++   + + Lle+ a +
  MMETSP0890-20130614|28727_1 112 DGKTPLHQAMKwYKESRITRVLLEYAATV 140
                  699*******9777788999999986655 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.46
    PF13606.1   4 TpLhlAasn.gr 14 
                  TpL + a++  +
  MMETSP0890-20130614|28727_1 150 TPLNYLAESyLH 161
                  889888885244 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0     7e-09   1.9e-05       3      41 ..      83     120 ..      81     134 .. 0.91
   2 ?    4.4   0.0     0.019        53       3      40 ..     115     154 ..     115     158 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 7e-09
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiA 41 
                  ++L+ a+  ++++++k++l+++ d+n + ++G t+Lh A
  MMETSP0890-20130614|28727_1  83 SPLFAAIDRNDIKTLKWCLQNNCDPNVK-ADGKTPLHQA 120
                  89**************************.99******98 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.019
    PF13637.1   3 taLhyaai.sgrlelvklLlekgidinrt.desGntaLhi 40 
                  t+Lh+a++ +   ++ + Lle+ + ++ + d +  t+L +
  MMETSP0890-20130614|28727_1 115 TPLHQAMKwYKESRITRVLLEYAATVDEVeDVFRATPLNY 154
                  79******999999*******9999999999999999977 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06    0.0051      15      56 .]      80     120 ..      76     120 .. 0.93
   2 !    8.7   0.0   0.00067       1.8      16      38 ..     113     136 ..     109     154 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-06
    PF13857.1  15 ggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  +g++pL  A+ +++   +++ l++++d+n++  dg t+l+ A
  MMETSP0890-20130614|28727_1  80 TGFSPLFAAIDRNDIKTLKWCLQNNCDPNVKA-DGKTPLHQA 120
                  6899***************************9.789**9976 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00067
    PF13857.1  16 gntpLhlAak.ggalevvrlLlap 38 
                  g tpLh+A k +  + + r Ll++
  MMETSP0890-20130614|28727_1 113 GKTPLHQAMKwYKESRITRVLLEY 136
                  56*******************944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 658.10
//
Query:       MMETSP0890-20130614|28734_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.7   1.4      0.003   17.0   0.6    1.7  1  PF13414.1  TPR repeat
     0.0076   15.6   0.9      0.056   12.9   0.1    2.4  2  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   15.0   1.3      0.034   14.1   0.9    1.5  1  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.024   14.7   0.3       0.19   11.8   0.1    2.0  2  PF03704.12 Bacterial transcriptional activator domain


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   8.9e-07     0.003       6      62 ..      23      78 ..      19      85 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8.9e-07
    PF13414.1  6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledye 62
                 l +l+ + f+ + y + + ++ +Al+++pn+ ++++ + ++y+ l ++y++A  d++
  MMETSP0890-20130614|28734_1 23 LIALAHCDFRHKLYRQVLNHCYQALQINPNHTDVLLLRIKTYIYL-DEYQAATNDLD 78
                 56788888999999999***************************9.68*99988876 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   1.6e-05     0.056      12      34 .]      31      53 ..      21      53 .. 0.82
   2 ?    0.6   0.0      0.13   4.3e+02       7      22 ..      60      75 ..      55      78 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
                 HHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23 12 lklgkydeAleyyekALelnPnn 34
                 ++ + y + l ++ +AL++nPn+
  MMETSP0890-20130614|28734_1 31 FRHKLYRQVLNHCYQALQINPNH 53
                 666779999************97 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.13
                 HHHHHHHTT-HHHHHH CS
   PF00515.23  7 lGnaylklgkydeAle 22
                 +  +y +l +y+ A  
  MMETSP0890-20130614|28734_1 60 RIKTYIYLDEYQAATN 75
                 667899******9965 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9     1e-05     0.034      24      81 ..      19      77 ..       7      80 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
                 HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCH CS
    PF12895.2 24 edaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAiavL 81
                   a+l alA c ++ + y++ ++ + + l++++++ +  +l  ++++ l++y+ A + L
  MMETSP0890-20130614|28734_1 19 RFAVLIALAHCDFRHKLYRQVLNHCYQaLQINPNHTDVLLLRIKTYIYLDEYQAATNDL 77
                 5779999***********999888866789999**7777777***********998766 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.6e-05      0.19      48     115 ..       6      73 ..       3      82 .. 0.88
   2 ?    2.0   0.0     0.062   2.1e+02      29      79 ..      73     123 ..      68     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.6e-05
   PF03704.12  48 pwleaererleelrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeA 115
                  p +e+e+++l+e r+++l al+ +d+r   ++++l +  ++++ +P + ++    ++++  +++ ++A
  MMETSP0890-20130614|28734_1   6 PEIEDEIKELDETRFAVLIALAHCDFRHKLYRQVLNHCYQALQINPNHTDVLLLRIKTYIYLDEYQAA 73 
                  67899*****************************************9988888888877777776666 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.062
   PF03704.12  29 leaalalwrGpaladvragpwleaererleelrlealealieadlrlgrhe 79 
                  +++ l+  ++pa ++++  +    +r++  ++r +++ ++i   l  g+h+
  MMETSP0890-20130614|28734_1  73 ATNDLDALHDPASNQAKILRATLNNRQQAYQSRSKVQSQRIVQALVGGNHK 123
                  567788889999999999999999999999999999999999888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       609  (0.0445436); expected 273.4 (0.02)
Passed bias filter:                      446  (0.0326214); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 592.78
//
Query:       MMETSP0890-20130614|28748_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.43s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 932.28
//
Query:       MMETSP0890-20130614|28754_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 991.91
//
Query:       MMETSP0890-20130614|28760_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-53  178.5   0.0    8.6e-53  178.3   0.0    1.0  1  PF00625.16 Guanylate kinase
  ------ inclusion threshold ------
      0.048   13.4   0.0       0.11   12.2   0.0    1.5  2  PF09869.4  Uncharacterized protein conserved in archaea (DUF2096)
      0.064   13.0   0.0       0.16   11.7   0.0    1.8  1  PF13671.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00625.16  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   0.0   1.9e-56   8.6e-53      13     181 ..       2     176 ..       1     178 [. 0.95

  Alignments for each domain:
  == domain 1    score: 178.3 bits;  conditional E-value: 1.9e-56
                  --HHHHHHHHHHH-TTTEE----EE-S---TTS------EE--HHHHHHHHHTT-BS----BTTB----BHHHHHHHHHTT-EEEEE--CCHHHHHHCTTT-EEEEEE.ECSHHHHHHH.TTS.HHHHHHHHHHHHHHHHHHG..GG......-SEEEEE--HHHHHHHHHHHHH CS
   PF00625.16  13 vGkstlkkaLldelpekfgisvshtTrdprkgevdGkdYfFvskeelekdisaneflEaaefsgnlygtskeaveeiaesgkiviLDvdiqgvkqlkkaelapilvfIkppslkelqrrlksrgkeqeekiakrleaaekelq..eyae....Fdvvivnddldealkklkeile 181
                  +Gk tl+ +L + +p  fg+svshtTr  r+ge++G +Y+F + e ++++i+a +flE ae +gn+ygtsk+ave+++++gki+iLD+d+qgv+q+k  +l+  +++I+ p+l+el++rl++rg+e+eeki+kr+ +a++el+  + +     Fd+ + nd+ld++ ++l++++ 
  MMETSP0890-20130614|28760_1   2 AGKGTLIGKLQEWQPAAFGFSVSHTTRSARPGEENGIHYHFTDVETMKREIAAGAFLECAEVHGNYYGTSKAAVEKVQNEGKICILDIDVQGVQQVKRSSLKCKYLWIEVPTLEELEKRLRGRGTETEEKIQKRIRNAKNELEfaHPDSdqtpFDAFLINDKLDDTFSELQQLIF 176
                  7999************************************************************************************************************************************9999765115544889*******************9985 PP

>> PF09869.4  Uncharacterized protein conserved in archaea (DUF2096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.3   5.9e+03     118     136 ..      47      65 ..      41      78 .. 0.82
   2 ?   12.2   0.0   2.4e-05      0.11       8      67 ..     114     177 ..     107     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.3
    PF09869.4 118 klkeeleverlqelsEyeg 136
                  ++k+e++   + e +E++g
  MMETSP0890-20130614|28760_1  47 TMKREIAAGAFLECAEVHG 65 
                  4788888888888888876 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.4e-05
    PF09869.4   8 LnellsklrkrgkevpeevleklrlarailnfYklDpha....sakeLkkiekelnkvqeaLle 67 
                  L+el + lr rg+e  e++ + +r a++ l+f + D ++     + +  k +++ +++q+ ++e
  MMETSP0890-20130614|28760_1 114 LEELEKRLRGRGTETEEKIQKRIRNAKNELEFAHPDSDQtpfdAFLINDKLDDTFSELQQLIFE 177
                  99******************************99998876555556667788888888887765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.16      49     132 ..      61     135 ..       2     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.4e-05
    PF13671.1  49 trvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvrivylevpe.etlreRlakRerngddrsevpeea 132
                  ++v+ + y++ ++ ++k++ +g+ +i+d    + +     v+ +kr + +++ +++evp  e+l++Rl+ R+ + ++++++   +
  MMETSP0890-20130614|28760_1  61 AEVHGNYYGTSKAAVEKVQNEGKICILD---IDVQG----VQQVKRSSLKCKYLWIEVPTlEELEKRLRGRGTETEEKIQK---R 135
                  5666677777777777777777777777...44444....4556788899********988************97765543...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.73
# Mc/sec: 728.76
//
Query:       MMETSP0890-20130614|28766_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-29  101.0   0.0    8.3e-29  100.1   0.0    1.5  1  PF08292.7  RNA polymerase III subunit Rpc25
    7.3e-11   41.9   0.1    1.6e-10   40.8   0.0    1.6  1  PF03876.12 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
  ------ inclusion threshold ------
      0.043   13.0   0.0      0.073   12.3   0.0    1.4  1  PF07443.8  HepA-related protein (HARP)
      0.098   12.6   0.0       0.16   12.0   0.0    1.3  1  PF00575.18 S1 RNA binding domain


Domain annotation for each model (and alignments):
>> PF08292.7  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   2.4e-32   8.3e-29       1     122 []      63     205 ..      63     205 .. 0.95

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 2.4e-32
    PF08292.7   1 PfvgevltgkikssseeGikvslgffddifvpkelLpepsefdeeeqaWvweyeeeeelyldkgeevrfrVeeeifvdvkpkspeeae......................eekaeeeeekkekkapyevigsiqedGLGlvsWW 122
                  Pf ge+++g++  s + G++vsl+ff+di++p e+Lp p+ +d+e+++W+w+y +++e+ ld g evrf+V+  +f++v+ ++   ++                      ++++ + ++++   ++++v gsi+ dGLG++ WW
  MMETSP0890-20130614|28766_1  63 PFAGEIIQGRLIGSHHAGLRVSLDFFEDIIIPLENLPSPNTYDPETRLWTWHY-DDSEFHLDPGLEVRFQVKAITFTQVSAQKRGLQAtttsiekasgvkqapthtgvrrRSSSIDLDSSAPIPSAMQVFGSINADGLGPTGWW 205
                  9****************************************************.9*********************888888777666899***************9998777888888899999******************* PP

>> PF03876.12  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   4.7e-14   1.6e-10      11      70 .]       2      61 ..       1      61 [. 0.97

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 4.7e-14
                 TT.-HHHHHHHHHHCCCCTS--S----EEEEE-EETTS----------EEEEEEEEEEEE CS
   PF03876.12 11 lgstledallerllekyegkvvpslGvvvaildiaevdegkvlggsGsvyfrVtfralvF 70
                 ++++l+d+l + +  ky g+v +++G+++++  + e++ g+v + +G +++ V+f++lv+
  MMETSP0890-20130614|28766_1  2 FSRDLDDSLRDVIDAKYGGRVLEEIGLCMCVVSLVEIETGIVHPQDGCASYQVEFQLLVW 61
                 6789*******************************************************9 PP

>> PF07443.8  HepA-related protein (HARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.073       3      36 ..      83     117 ..      81     121 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
    PF07443.8   3 veiGYheelIavFKqlpsks.YDpkTkkWsFsleD 36 
                  v   + e++I    +lps + YDp+T++W+ +  D
  MMETSP0890-20130614|28766_1  83 VSLDFFEDIIIPLENLPSPNtYDPETRLWTWHYDD 117
                  566788888888999999544********987666 PP

>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05      0.16       1      62 [.      62     135 ..      62     143 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.6e-05
                  -SSTT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CC............EEEECCCCEETT----EEEEE- CS
   PF00575.18   1 kpekGevvkGtVtsvtkgGafVdlgngvegfipiseissd............rvedpeevlkvgdevevkvlkv 62 
                  +p+ Ge+++G+  +    G++V l+   +  ip+++++s             +++d+e  l +g ev+++v  +
  MMETSP0890-20130614|28766_1  62 RPFAGEIIQGRLIGSHHAGLRVSLDFFEDIIIPLENLPSPntydpetrlwtwHYDDSEFHLDPGLEVRFQVKAI 135
                  5899*********************9999*********999*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:01.01
# Mc/sec: 602.65
//
Query:       MMETSP0890-20130614|28779_1  [L=1032]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.9e-132  439.9   0.5   1.1e-131  439.4   0.4    1.1  1  PF01055.21 Glycosyl hydrolases family 31
    3.5e-18   65.1   0.3    8.2e-18   63.9   0.2    1.7  1  PF13802.1  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> PF01055.21  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.4   0.4  1.6e-135  1.1e-131       5     451 .]     387     847 ..     380     847 .. 0.92

  Alignments for each domain:
  == domain 1    score: 439.4 bits;  conditional E-value: 1.6e-135
                  ---HHHHHHHHHHH--------GGG---EEE--SS--HHHHHHHH---GGGT----EEEE-G....STTS--B-TTT-S-.----HHHHHH---EEEEEE-SEE-E-......SHHHHHHHH---B-B-.--.-B---SSS---EEEB-TTSH.HHHHHHHHH---TT..----E.EEE-------.................SSSBHHHHHHHHHHHHHHHHHHHHH--...........-TT--EEES-B----TTS--B-----BSSHHHHHHHH-------------BEEEE---BS.---HHHHHHHH----SSSEEE----S-..SSGGGT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SSBEHHHHSTT....-GGGTT...--S-EEE---EEE----S----EE.EEE---.-EEETTT--EE---E...EEEE-----.-.--EEE-SSEEE CS
   PF01055.21   5 gptpeevvkqyteltGrpalpPkWalgfhqcrygyksesevrevvdryrenkiPldviwlDidymdeyrdftwdperfpdkpkemldelhangikvvliidpaisirkeeneeygvleegkekdvfikdkdg.kvyigevwpgksafpDftnpearewWkeeiknlyeeklgidg.vwiDmnepsvfsgdektlptnalhtagvdeyevhnlyglleakatyealrklrp...........nkrpfilsRsgfaGsqryaghWtGDntstWeslrksisavlslslsGiplvgaDigGfegnpteelliRwmqlgaFlPffRnHnekktrkqepwafgeeveeaarkalelRyrllpylytlmyeaaetglpvvrplflefpe....dentyd...iddqyllGddlLvaPVleegatsrdvyLPeg.kWydlytgekyegageggttvtveapldk.iPvfvreGaii 451
                  g++p +++ +   l+G + lpP++alg+hqcr++yk+e +v++v ++++  +iP+dv+wlDi++ d++r+ftwd+  fpd p  m ++l   g k+v+i+dp+i   k++n+ y++  e+ + +++ikd+ g k++ g++wpg s ++Dft++++r+wW+e++   + +   +d   w+Dmnepsvf+g e t+++++++ +g++++e hnlyg++ ++at+e+l+ + +           + r+f+l+Rs++aGsqr++++WtGDn+++W++l++  +++lsl+++G++++gaD gGf+g+p++el++Rw++++a++PffR H++++++++epw+fge +++ +r+a++ Ry++lp++ytl++ea   g pv+rpl+ +++     d+++ +   iddq+llG+dlL++PV+++g ++ dvy+P g +W+d  +g+ y+  ++ gt + ++a+ld+ +P+f r+G+i+
  MMETSP0890-20130614|28779_1 387 GTNPITALTKMPVLVGAQELPPMFALGYHQCRWNYKDERDVAAVHANFEMLDIPYDVLWLDIEHADGKRYFTWDTSLFPD-PISMQTNLSRTGRKMVTIVDPHI---KRDNN-YYIHSEATKLGLYIKDESGtKDFEGWCWPGSSSYLDFTSADVRKWWAEQFLLSSYQGSTLDLyTWNDMNEPSVFNGPEVTMSKECQSRNGIEHREWHNLYGMYFHRATAEGLELRGQspearaihngdAARGFVLTRSFYAGSQRWGAVWTGDNAARWDHLQIATPMLLSLAVCGFSFAGADAGGFFGDPEPELMTRWIAAAAYTPFFRGHAHHDAKRREPWSFGEPWTSRLRAAIADRYTWLPLFYTLFAEARFLGSPVMRPLWAHYKApagdDATAKKladIDDQWLLGSDLLIKPVVTPGVSTIDVYFPPGsSWFDA-RGD-YSL-YNPGTSQRISATLDQaVPIFQRAGSIL 847
                  55677778888889*****************************************************************8.***********************...55666.************************************************9875554667788669**********99************************************986224688999999999*****************************************************************************************************************************************9843332333322555*****************************999****9.444.555.56788889999999747********97 PP

>> PF13802.1  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.2   1.2e-21   8.2e-18       4      68 .]     280     357 ..     277     357 .. 0.94

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 1.2e-21
    PF13802.1   4 fyGlGeragrlnkrg..........qryrlwntDgfgyeadstdplYksiPfyialn...sskgyGvFwdnpaetsfD 68 
                  +yGl e+a r+ ++           ++yr++n+D+f+y+ d +++lY+siP+ +++n    ++++G Fw+np+et++D
  MMETSP0890-20130614|28779_1 280 VYGLAEHASRFKLKStkgtnqdsyqEPYRFYNLDVFEYDLDVPMALYGSIPLAWGVNtrnDGRTVGAFWNNPSETFVD 357
                  8*************77889999999*******************************9777778**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1032 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.25u 0.56s 00:00:01.81 Elapsed: 00:00:00.91
# Mc/sec: 2717.63
//
Query:       MMETSP0890-20130614|28796_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.44s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 136.41
//
Query:       MMETSP0890-20130614|28791_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.36   10.5   6.1          1    9.0   1.9    2.5  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.38   10.1  23.5      0.082   12.3  12.9    2.3  2  PF04156.9  IncA protein
        1.2    8.8  11.1       0.61    9.8   0.6    3.4  3  PF10506.4  PDZ domain of MCC-2 bdg protein for Usher syndrome
        4.7    7.1  16.3       0.36   10.6   1.3    3.7  4  PF06657.8  Centrosome microtubule-binding domain of Cep57
        4.9    4.7  13.0        5.6    4.5   9.0    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        9.4    5.9  22.6       0.61    9.7   1.1    4.4  4  PF02183.13 Homeobox associated leucine zipper


Domain annotation for each model (and alignments):
>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.056   1.3e+02      37      66 ..       7      36 ..       4      61 .. 0.83
   2 ?    9.0   1.9   0.00045         1      31      87 ..      80     140 ..      55     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.056
    PF04513.7 37 atlldaietqLnalsedlksllaeldtrld 66
                 +t  +++e +L  l++d+ sl ++l++ ld
  MMETSP0890-20130614|28791_1  7 KTRREKLEMELALLQADVASLCTKLQQPLD 36
                 566788999999999999999999998776 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00045
    PF04513.7  31 qilaqlatlldaietqLnalsedlksllaeldt..rldtlltnLtdalnalq...dtlrneL 87 
                   i a l+++ld+i +q ++l+ ++ +l +el++   l + + +L++  ++lq   ++lr+ L
  MMETSP0890-20130614|28791_1  80 RI-ARLQKALDEITRQKKDLALEVDRLQTELEKssSLREKFIKLKAEHANLQqdyKSLRESL 140
                  45.99**************************9988899999999999999985555555555 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.48   1.1e+03     160     182 ..      10      32 ..       4      36 .. 0.41
   2 ?   12.3  12.9   3.6e-05     0.082      81     181 ..      72     168 ..      49     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.48
    PF04156.9 160 vqelrselerlqedlqrlqekla 182
                   ++l+ el+ lq+d + l++kl+
  MMETSP0890-20130614|28791_1  10 REKLEMELALLQADVASLCTKLQ 32 
                  33333333333444444443333 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.6e-05
    PF04156.9  81 eelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqekl 181
                  ++   +++++++l++ l+++ ++ ++l  e++ l+ +le+ +    sl+e++ +l+ ++++l+++++ lre++  +++  +++++ ++ l+ ++q+ + ++
  MMETSP0890-20130614|28791_1  72 ISTLTEKERIARLQKALDEITRQKKDLALEVDRLQTELEKSS----SLREKFIKLKAEHANLQQDYKSLRESLATSEDIRKQQKELIAMLSGNRQEEKSQV 168
                  45566799**********************************....9999999999999999999999998888888999999999998877776665555 PP

>> PF10506.4  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.021        48       2      19 ..       5      22 ..       4      28 .. 0.86
   2 ?    0.4   0.2      0.23   5.3e+02      14      38 ..      81     105 ..      77     115 .. 0.83
   3 ?    9.8   0.6   0.00027      0.61       8      39 ..     131     162 ..     121     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.021
    PF10506.4  2 kLkgrveeLksanelLta 19
                 + k r+e+L++ ++lL a
  MMETSP0890-20130614|28791_1  5 QTKTRREKLEMELALLQA 22
                 6689***********976 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.23
    PF10506.4  14 nelLtavleeykqrseelsmdlgkr 38 
                   ++L + l+e  +++  l +++ + 
  MMETSP0890-20130614|28791_1  81 IARLQKALDEITRQKKDLALEVDRL 105
                  5799999*******99999887765 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00027
    PF10506.4   8 eeLksanelLtavleeykqrseelsmdlgkre 39 
                  +  ks+ e L+ +++++kq++e + m+ g r 
  MMETSP0890-20130614|28791_1 131 QDYKSLRESLATSEDIRKQQKELIAMLSGNRQ 162
                  66799*********************999875 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.83   1.9e+03      51      62 ..       9      20 ..       2      32 .. 0.58
   2 ?    4.4   1.2     0.014        32      49      70 ..      92     113 ..      75     118 .. 0.77
   3 ?   10.6   1.3   0.00016      0.36      22      66 ..     115     157 ..     113     160 .. 0.86
   4 ?   -2.3   0.0       1.8   4.1e+03      47      61 ..     180     194 ..     174     209 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.83
    PF06657.8 51 krkeLaqeleel 62
                 +r++L+ el  l
  MMETSP0890-20130614|28791_1  9 RREKLEMELALL 20
                 444444444333 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.014
    PF06657.8  49 krkrkeLaqeleellkrlEaKa 70 
                   r++k+La e+++l+ +lE+ +
  MMETSP0890-20130614|28791_1  92 TRQKKDLALEVDRLQTELEKSS 113
                  5899***************865 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00016
    PF06657.8  22 LeDElehlkmeyqeladelkkldaslskrkrkeLaqeleellkrl 66 
                  L++ +  lk e++ l++ +k+l +sl    +++++++ +el+  l
  MMETSP0890-20130614|28791_1 115 LREKFIKLKAEHANLQQDYKSLRESLAT--SEDIRKQQKELIAML 157
                  5666789*******************98..789999999988765 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.8
    PF06657.8  47 lskrkrkeLaqelee 61 
                   +++k k+Laq+++ 
  MMETSP0890-20130614|28791_1 180 RTVAKEKSLAQRMRS 194
                  566677777777764 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.0    0.0025       5.6       9     119 ..      57     189 ..      50     285 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0025
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....................X CS
   PF01496.14   9 lvqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielk..dekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenk....................v 119
                  l+q +  + ++s+   +++ e  r++ ++++l  + ++ k++++e+   +++ +++ +  +++ +l++e  +l+++ k+++esl + e   ++++el ++l  ++++ ++++                     
  MMETSP0890-20130614|28791_1  57 LIQNNKSKGNSSDVDISTLTEKERIARLQKALDEITRQKKDLALEVDrlQTELEKSSSLREKFIKLKAEHANLQQDYKSLRESLATSEDIRKQQKELIAMLSGNRQEEKSQVkiikrrdtpntrtvakekslA 189
                  56666666788888999999999********9999999999999999666666666666669****************************************9999999987666655544433333322222 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.6    0.0071        16      18      44 ..       7      33 ..       4      34 .. 0.90
   2 ?    4.1   1.2     0.015        33      10      38 ..      84     112 ..      82     114 .. 0.80
   3 ?    9.7   1.1   0.00027      0.61      10      36 ..     115     141 ..     113     150 .. 0.85
   4 ?   -2.3   0.1       1.5   3.5e+03      10      18 ..     236     244 ..     235     246 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0071
   PF02183.13 18 kaendsLqkEkekLraevlsLkeklqe 44
                 k + ++L++E + L+a v+sL  klq+
  MMETSP0890-20130614|28791_1  7 KTRREKLEMELALLQADVASLCTKLQQ 33
                 66789*******************997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.015
   PF02183.13  10 LKrnydaLkaendsLqkEkekLraevlsL 38 
                  L++  d ++++ + L  E+++L++e+++ 
  MMETSP0890-20130614|28791_1  84 LQKALDEITRQKKDLALEVDRLQTELEKS 112
                  77888889999999999999999998865 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00027
   PF02183.13  10 LKrnydaLkaendsLqkEkekLraevl 36 
                  L+ ++ +Lkae+ +Lq++ ++Lr  ++
  MMETSP0890-20130614|28791_1 115 LREKFIKLKAEHANLQQDYKSLRESLA 141
                  889999999999999999999997665 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.5
   PF02183.13  10 LKrnydaLk 18 
                  L+  +++Lk
  MMETSP0890-20130614|28791_1 236 LQDACEKLK 244
                  888999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1724  (0.126097); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.58s 00:00:01.29 Elapsed: 00:00:00.74
# Mc/sec: 1084.84
//
Query:       MMETSP0890-20130614|28806_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.09   12.2   0.1       0.11   12.0   0.1    1.3  1  PF03682.8 Uncharacterised protein family (UPF0158)


Domain annotation for each model (and alignments):
>> PF03682.8  Uncharacterised protein family (UPF0158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.9e-06      0.11      81     116 ..      71     107 ..      19     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.9e-06
    PF03682.8  81 kvedid.tkeklleilqskkareafleflydyeeele 116
                   v+d   t  ++++i++ ++  ++fl  + +++++ e
  MMETSP0890-20130614|28806_1  71 SVYDQSlTESTIADIIKNRNDVKEFLSTVSNHHNNTE 107
                  57776537889**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 458.96
//
Query:       MMETSP0890-20130614|28828_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 935.87
//
Query:       MMETSP0890-20130614|28830_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.3   3.8        2.4    7.9   0.3    2.7  3  PF03724.11 META domain
       0.11   11.5   0.7       0.31   10.1   0.3    1.9  1  PF10845.3  Protein of unknown function (DUF2576)
        0.3   10.3   4.2       0.11   11.6   0.7    1.9  2  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
       0.95    8.5  20.4      0.065   12.3   7.1    2.1  2  PF13851.1  Growth-arrest specific micro-tubule binding
        4.1    7.0   6.7        4.9    6.8   0.3    2.5  2  PF07889.7  Protein of unknown function (DUF1664)
        8.9    6.3  14.0          1    9.3   0.7    3.3  3  PF12709.2  Central kinetochore-associated


Domain annotation for each model (and alignments):
>> PF03724.11  META domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   2.4e+03      72      99 ..      25      53 ..      10      55 .. 0.68
   2 ?    4.6   0.0     0.011        26      59      79 ..      91     111 ..      64     118 .. 0.80
   3 ?    7.9   0.3     0.001       2.4      52      87 ..     150     186 ..     147     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
                 -..-----TGGGTS-.-SB----SSEEE- CS
   PF03724.11 72 elmelEkallkaLqs.vtsyriegdrLtL 99
                 + +++ + l k L++  ++++i ++rL++
  MMETSP0890-20130614|28830_1 25 QTATIVRLLRKQLERvHKKLSIAEQRLVW 53
                 45566666777777755667778888887 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.011
                  --------------..----- CS
   PF03724.11  59 lgalasTrmaCseelmelEka 79 
                  + ++a+Tr+ C++ + +lEk+
  MMETSP0890-20130614|28830_1  91 VAKAAATRKECAALREQLEKE 111
                  67899******9999999986 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.001
                  E----EE--------------..-----TGGGTS-.- CS
   PF03724.11  52 leggrltlgalasTrmaCseelmelEkallkaLqs.v 87 
                  l+++  +l++ + Trm C+ + ++l + l +++++ +
  MMETSP0890-20130614|28830_1 150 LRDSDAELQRYRQTRMKCATATQRLAETLRELMNElA 186
                  66778899999*******9999999888888888733 PP

>> PF10845.3  Protein of unknown function (DUF2576)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00014      0.31      18      39 ..     123     140 ..     117     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
    PF10845.3  18 RelNSLRrsVHeLCtRStTgFD 39 
                   + NSLRr  H+L     T+FD
  MMETSP0890-20130614|28830_1 123 ADSNSLRRALHNLS----TSFD 140
                  578**********6....4555 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.9   2.1e+03     159     179 ..      23      44 ..      19      48 .. 0.67
   2 ?   11.6   0.7     5e-05      0.11     113     170 ..     102     162 ..      84     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.9
    PF05791.6 159 ksqgadie.klkkeieklqeei 179
                  ksq a i   l+k++e+++++ 
  MMETSP0890-20130614|28830_1  23 KSQTATIVrLLRKQLERVHKKL 44 
                  6667666515688888887765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 5e-05
    PF05791.6 113 ekLqeeiqkn...qkevkqlleeLkafknklakdtksfksdvdeltsiLksqgadieklkk 170
                   +L+e+  k    + e ++ll + + ++ +l++ ++sf+++  +l+s L  ++a+++  ++
  MMETSP0890-20130614|28830_1 102 AALREQLEKErseRAENEALLADSNSLRRALHNLSTSFDEQERHLKSSLRDSDAELQRYRQ 162
                  455555544410045667899999********************************99877 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.8     0.049   1.1e+02      89     129 ..      24      64 ..      16      72 .. 0.60
   2 ?   12.3   7.1   2.8e-05     0.065      48     141 ..      92     185 ..      79     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.049
    PF13851.1  89 knlkaklkelekelknlkwesevleqrfekverErdelykk 129
                  +++ + ++ l+k+l+++ ++ ++ eqr+    +Er++l+++
  MMETSP0890-20130614|28830_1  24 SQTATIVRLLRKQLERVHKKLSIAEQRLVWERNERERLEEE 64 
                  55555566666666666666666666666666666666554 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.8e-05
    PF13851.1  48 klmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvqqkt 141
                   ++a + ke   l+e+L+k ++e++e +  l++ ++ +++L nl ++ +e+e++lk+   +s+   qr+++      + +++  +++++++++ 
  MMETSP0890-20130614|28830_1  92 AKAAATRKECAALREQLEKERSERAENEALLADSNSLRRALHNLSTSFDEQERHLKSSLRDSDAELQRYRQTRMKCATATQRLAETLRELMNEL 185
                  56677889999************************************************************99999999999999998887765 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.7      0.03        68      36      81 ..      21      69 ..      19     113 .. 0.76
   2 ?    6.8   0.3    0.0022       4.9      46     106 ..     126     186 ..     116     193 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.03
    PF07889.7 36 vtkrnladAvasvtkqlekvseavasakkhLs...qridnlddkldeqk 81
                 v k + a  v  + kqle+v++++  a ++L    ++ ++l++++d+++
  MMETSP0890-20130614|28830_1 21 VAKSQTATIVRLLRKQLERVHKKLSIAEQRLVwerNERERLEEEIDRER 69
                 5677778888999999999999999998888622233455666666655 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0022
    PF07889.7  46 asvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvk 106
                  +s+ + l+++s++  +  +hL + +   d +l++ +++  + +   +++ e+l+++ +++ 
  MMETSP0890-20130614|28830_1 126 NSLRRALHNLSTSFDEQERHLKSSLRDSDAELQRYRQTRMKCATATQRLAETLRELMNELA 186
                  678899999*************************999999999999999998888887765 PP

>> PF12709.2  Central kinetochore-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.8     0.021        48      36      77 ..      30      70 ..      23      73 .. 0.82
   2 ?    9.3   0.7   0.00044         1      51      81 ..      87     117 ..      83     124 .. 0.86
   3 ?    0.2   0.2      0.32   7.2e+02      53      53 ..     166     166 ..     130     194 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.021
    PF12709.2 36 VkaLkKsYeakyekkldelelenkalkeeieqLkkqleaerk 77
                 V +L+K  e + +kkl  +e+++   ++e e+L+++++ er+
  MMETSP0890-20130614|28830_1 30 VRLLRKQLE-RVHKKLSIAEQRLVWERNERERLEEEIDRERA 70
                 888998887.56789999999999999999999999988885 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00044
    PF12709.2  51 ldelelenkalkeeieqLkkqleaerkekqe 81 
                  ++++  +  a+++e+  L++qle er+e+ e
  MMETSP0890-20130614|28830_1  87 VEDAVAKAAATRKECAALREQLEKERSERAE 117
                  7788889999****************99875 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.32
    PF12709.2  53 e 53 
                  +
  MMETSP0890-20130614|28830_1 166 K 166
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1697  (0.124122); expected 273.4 (0.02)
Passed bias filter:                      648  (0.0473961); expected 273.4 (0.02)
Passed Vit filter:                        81  (0.00592452); expected 13.7 (0.001)
Passed Fwd filter:                        25  (0.00182855); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.78
# Mc/sec: 605.23
//
Query:       MMETSP0890-20130614|28833_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-31  107.7   0.7    5.1e-31  107.3   0.1    1.5  2  PF04098.10 Rad52/22 family double-strand break repair protein
  ------ inclusion threshold ------
       0.15    9.6   1.2        0.2    9.2   0.8    1.1  1  PF05086.7  Dictyostelium (Slime Mold) REP protein
        8.8    5.9  12.6         12    5.5   8.8    1.3  1  PF03153.8  Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF04098.10  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.1   1.1e-34   5.1e-31       3     146 ..      32     174 ..      30     181 .. 0.90
   2 ?   -3.3   0.0       1.3     6e+03      16      37 ..     247     268 ..     243     277 .. 0.54

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 1.1e-34
   PF04098.10   3 etlqakLekklgpeyisvrqgksglskvaylegskvinlaNevFGfnGWsseiesievdfvdeekesgkysvkvtalvrvtlkdGt..yredvGygsatnvdskgeafekakKeAvtdAlKrAllqFgnvlGnclydkekkkkvts 146
                  e++ +kL++++ p +i +r+g++g +k++y+e++ v++ aN++FGfn W +++ +i++d+  ++k+ g +++ v+++ +  ++ ++   +ed+G   ++  +  g+++ +a+K A+tdA KrAl++Fgn+lGnc+ydk+  k++ s
  MMETSP0890-20130614|28833_1  32 EEIINKLNEPISPTRIASRPGPGG-KKISYVEAHIVYDTANRIFGFNNWGTSVSDITIDHKVKDKD-GIWQIAVSVKAKAWVRGAEsmGHEDIGNHCTK-GKDYGDTLHRAQKAAITDAKKRALRTFGNALGNCCYDKNLMKRNLS 174
                  67889*******************.*********************************87776666.89999999999999998887689****87666.6777**********************************99988765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
   PF04098.10  16 eyisvrqgksglskvaylegsk 37 
                  ++ + +q++ + s + y+ g  
  MMETSP0890-20130614|28833_1 247 QKQQAQQQQLDESTIDYMAGVD 268
                  4444444555555566666655 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.8   4.5e-05       0.2     252     350 ..     197     298 ..     179     308 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 4.5e-05
    PF05086.7 252 eknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddp..qsdfskkssrksgslkdvrvdnis.dseldddvnesispeekiisvsnk 350
                   +++ + ++++tttt s++ ++++   ++  +++++ + +++ ++ + ++   q++ ++  +   + +  v++++ + d+ ++++ + +++ +++i s +++
  MMETSP0890-20130614|28833_1 197 ITAPPVAQQSKTTTTISRPPQQQQLPLQPIVPQQQPPPLPPQPQSLPLQQQkqQAQQQQLDESTIDYMAGVDINEFNaDEISNQNFDPEQKRQKTIHSLPSV 298
                  556678899999*******99999999988888877777766666665554213333444444457788999999995555667788999999999998775 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.8    0.0026        12     123     217 ..     175     291 ..     135     342 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0026
                  XXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXX........ CS
    PF03153.8 123 vmvtqnsanselqqpaqqraaqqlqqslgapassqas................slqqqpaplksneesqeqqqpgkeiqqqqtdgasdde.........kasvarrreaaasqeaeldel 217
                  +m  +ns  ++ +qp +  a+++++++  a++s+ ++                + qqqp pl+++++s + qq++++ qqqq d+++ d          +a    +++ + +  ++ +++
  MMETSP0890-20130614|28833_1 175 TMRGVNSLPPQ-AQPPKPPAPPTITAPPVAQQSKTTTtisrppqqqqlplqpiVPQQQPPPLPPQPQSLPLQQQKQQAQQQQLDESTIDYmagvdinefNADEISNQNFDPE--QKRQKT 291
                  33333333333.2222222222222222222222222122211111223444444555555555555555555555555555555544444444333332222222222222..222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.02
# Mc/sec: 822.28
//
Query:       MMETSP0890-20130614|28834_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-09   37.2   0.9    4.9e-09   36.0   0.2    2.0  2  PF00498.21 FHA domain


Domain annotation for each model (and alignments):
>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.2   3.6e-13   4.9e-09       1      67 [.       9      74 ..       9      75 .. 0.89
   2 ?   -2.6   0.0      0.39   5.3e+03      16      34 ..     201     219 ..     190     227 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 3.6e-13
                 EEE-E-TTSSS---TTTS-TTCEEEEEEETCEEEEEEECST--EEETTEECST....TSEEEE-TTEEEEE CS
   PF00498.21  1 vtiGRssdcdivlddpsiSrkHalikydeggkfyleDlgSknGtfvNgqrigk....gepvrLksgdviel 67
                 vt+GR+ d di+++  +iS  H+ +  d +    ++D  S+nGtfvN++r+++    + +  L+ gd++ +
  MMETSP0890-20130614|28834_1  9 VTVGRAVDKDIQIQLLQISNLHCKLCSDHS----VTD-YSSNGTFVNNVRVNSlkekEVKRVLNGGDRVAF 74
                 69************************9999....***.7*************9777666677777777765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.39
                  TTS-TTCEEEEEEETCEEE CS
   PF00498.21  16 psiSrkHalikydeggkfy 34 
                  ++i + H  i++++++++ 
  MMETSP0890-20130614|28834_1 201 AQIKKCHNNIEIEKQKNIA 219
                  6788888888888875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2146  (0.156963); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.37u 0.38s 00:00:01.75 Elapsed: 00:00:01.08
# Mc/sec: 1235.90
//
Query:       MMETSP0890-20130614|28849_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-28   97.6   0.0      5e-28   97.1   0.0    1.2  1  PF05187.8 Electron transfer flavoprotein-ubiquinone oxidoreductase
  ------ inclusion threshold ------
      0.012   15.8   2.5      0.021   15.0   1.7    1.3  1  PF12838.2 4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> PF05187.8  Electron transfer flavoprotein-ubiquinone oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   7.3e-32     5e-28       1     110 []      51     165 ..      51     165 .. 0.93

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 7.3e-32
    PF05187.8   1 Glllglalagldqnllkgkapwtlk.ekkpDaaalkkakeakkieypkpDgklsfdklssvflsntnHeedqpvHLklk.....daevpikvnlekydepeqryCPAgVYevvede 110
                  Gl++g +++g++ +llkg++pwt++ + + D++++ +a+++k i+ypkpDgk+sf  l+++++s++ H  dqp HL++k       + +++++l+++++pe+ +CPAgVYe+ved+
  MMETSP0890-20130614|28849_1  51 GLYGGAIYSGISAYLLKGREPWTFQgKGHRDSETTAPATKVKSITYPKPDGKISFPLLENLARSAVDHI-DQPSHLHIKpelksLVSGKTAKSLTEFAAPERNFCPAGVYEYVEDN 165
                  899*********************956789**************************************7.8*******986654456678999********************985 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.7   3.1e-06     0.021      11      45 ..     153     185 ..     151     187 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.1e-06
    PF12838.2  11 aCptgaitldeeeeekgkkkvevdpekCtgCgaCv 45 
                   Cp+g+ ++ e+  ++g +   +++++C++C+ C 
  MMETSP0890-20130614|28849_1 153 FCPAGVYEYVED--NDGDPNLIINAQNCIHCKCCS 185
                  6*********97..57889***************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.87
# Mc/sec: 575.68
//
Query:       MMETSP0890-20130614|28847_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-41  141.3   0.3    4.4e-41  140.2   0.0    1.6  2  PF04832.7 SOUL heme-binding protein
  ------ inclusion threshold ------
      0.039   13.7   0.0       0.07   12.9   0.0    1.3  1  PF12650.2 Domain of unknown function (DUF3784)


Domain annotation for each model (and alignments):
>> PF04832.7  SOUL heme-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.18   1.2e+03      64      72 ..      10      23 ..       5      44 .. 0.61
   2 !  140.2   0.0   6.4e-45   4.4e-41       2     175 ..      67     244 ..      66     245 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.18
                 BSXEEEEE...... CS
    PF04832.7 64 TaPVltea.....i 72
                 T+PV t++     +
  MMETSP0890-20130614|28847_1 10 TTPVATSSapiaaE 23
                 88888888553321 PP

  == domain 2    score: 140.2 bits;  conditional E-value: 6.4e-45
                  XBXXXXBXXTT.XXXXEEEEEXEEEEEEEEEEESXHHHHHHXXXHHHHHHHXXXBTT..XXXXXXBSXEEEEE......XSXEEEEEEEEXXHHHH.SSXXXBSSTTEEEEEEEEEEEEEEEEXX.XX-HHHHHHHHHHHHHHHHH---G..GSS...XEEEEXXXSS..SXSSSSXEEEEEEB CS
    PF04832.7   2 vEtpkYevlek.ekdyeiRrYepavvaevtveegsleeaskkgfrrLakYifgkNek..gekiamTaPVlteaiamtaeeasgkvtvsfvlPskyqletlPePtdedvkleevpartvavirfsG.raseeeveekaakLkealeadgle..esg...efvlagYnpPw.tkpflrrnEvliev 175
                   E pkYe++ek ++ +eiR+Yep++vae+t+++++ +eas++gfr+La+Yifg  +k  +++++mTaPV+t a       ++++++vsfv+  + +l++lP P+d dv+l++vpa+t+  irfsG r+s++ +++k + L++al++++ +  +s+   ++ +agY +P+ t+ flrrnEv + v
  MMETSP0890-20130614|28847_1  67 LERPKYEIIEKiGDTVEIRKYEPYIVAEATIKTENHDEASGSGFRKLAGYIFGGKQKneQRTMRMTAPVTTYA------PNQKTYKVSFVMGLNETLKSLPIPSDADVSLKKVPAHTATYIRFSGpRPSQSLIAAKRSDLENALSKSKTKftPSRkfpHTLCAGYHDPFiTPKFLRRNEVGFHV 244
                  699********9999************************************99866633779**********9......5788******************************************66789999***************8887444466889*******637789******9877 PP

>> PF12650.2  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05      0.07       6      39 ..      39      74 ..      34      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1e-05
    PF12650.2  6 i..flilgilllkgkasfLisGYntmskeekekyde 39
                 +  +++l+++ll+g++s+ is +++ ++ e+ ky++
  MMETSP0890-20130614|28847_1 39 VkqLVVLTLVLLTGRMSIGISAWSSANRLERPKYEI 74
                 255899****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.97
# Mc/sec: 610.21
//
Query:       MMETSP0890-20130614|28851_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 311.17
//
Query:       MMETSP0890-20130614|28856_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.67
# Mc/sec: 1005.04
//
Query:       MMETSP0890-20130614|28882_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.23    9.6   5.0       0.25    9.4   3.5    1.1  1  PF03547.13 Membrane transport protein


Domain annotation for each model (and alignments):
>> PF03547.13  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.5   1.8e-05      0.25     153     212 ..      38     116 ..      17     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 1.8e-05
   PF03547.13 153 liseefp.etaasivsikvdsdvvsldgse.aleteeeikedgklhvtvrksnasrsdivs.................s 212
                  + +++++ +++  ++++++ s++v ld  + +l+++++i   +    +  ++n +r+ ++s                  
  MMETSP0890-20130614|28882_1  38 QRRAQKStTSTTTNQQFNHPSNQVPLDHDDiPLQNQQQIASRNEKDFSEESNNGNRPRSMSvtsqiieqiltsssppaQ 116
                  33345555788899*******************************************9999888887777766544432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       879  (0.064292); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:01.04
# Mc/sec: 311.07
//
Query:       MMETSP0890-20130614|28869_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-06   25.6   0.8    5.4e-05   23.1   0.2    2.3  2  PF00615.14 Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.059   8.1e+02      53      97 ..      58     103 ..      51     113 .. 0.80
   2 !   23.1   0.2     4e-09   5.4e-05       2      60 ..     363     423 ..     362     441 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.059
                  HHHHHTSSSST.TSSTS-HHHHHHHHHHTCS..--TTTTHHHHHHH CS
   PF00615.14  53 Iynkylapssp.kelnidkklreeleknlekaqpsrklfeeaqeev 97 
                  + ++++a++   + ln+++k r++  + l+k + +  +f    +++
  MMETSP0890-20130614|28869_1  58 MHSQFVAEALRlERLNLSEKERQKEVRELHKRKHQNPMFYCTTTDI 103
                  6678999999855569999999999999999888888888777766 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4e-09
                  HHHHHTSS---HHHHHHHHTTTTHHHHHHHHHHHHHCTS..--HHHHHHHHHHHHHHHTSS CS
   PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkka..keqeelskkakeIynkylap 60 
                  l+ +l++++ rs+F+ Fl+se++   l+F+l+vee   +  ++q+e  + ak+I  +y  +
  MMETSP0890-20130614|28869_1 363 LDIILKHEQSRSIFQAFLDSEHRRPPLDFYLQVEEQLINgvNNQSEQEQVAKKITLEYNCK 423
                  678999****************************966666688888899999999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:01.42
# Mc/sec: 777.97
//
Query:       MMETSP0890-20130614|28883_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-08   31.6   0.1     0.0089   15.5   0.0    2.3  2  PF13414.1  TPR repeat
    2.7e-06   27.7   1.7      0.002   18.6   0.0    2.9  3  PF13432.1  Tetratricopeptide repeat
    7.7e-06   25.3   0.4       0.29   11.0   0.0    3.6  4  PF07719.12 Tetratricopeptide repeat
    0.00018   21.2   0.9      0.021   14.6   0.0    2.6  3  PF13424.1  Tetratricopeptide repeat
    0.00053   20.2   2.1       0.21   12.2   0.1    3.2  4  PF13428.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.1   0.1       0.28   11.3   0.0    2.4  2  PF13431.1  Tetratricopeptide repeat
      0.028   14.6   0.7         11    6.6   0.1    2.8  3  PF07721.9  Tetratricopeptide repeat
      0.031   14.0   2.2       0.24   11.2   0.1    2.9  3  PF13374.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05     0.023      24      66 ..      10      51 ..       9      55 .. 0.91
   2 !   15.5   0.0   5.2e-06    0.0089       8      67 ..      67     126 ..      61     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
    PF13414.1 24 eayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66
                 +++++A+++dp ++ ++  l+  +l++g    eA + +e+Al+
  MMETSP0890-20130614|28883_1 10 ALLRHAIAIDPFDWRCLDTLGEFLLRNG-YQTEATQLLERALQ 51
                 6799************************.5689********98 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 5.2e-06
    PF13414.1   8 elGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                   +G +l   g+ de ++++ +A el p+++  ++n A + l+  +     ++++e Al+l
  MMETSP0890-20130614|28883_1  67 FRGKNLVLTGRVDEGCALFHQAKELYPESPLPHNNAAICDLRHQQLVPLQRKNFEIALSL 126
                  689999999******************************888655444557777777766 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06     0.002      18      59 ..      10      51 ..       9      59 .. 0.91
   2 !    6.9   0.0    0.0053         9       4      58 ..      69     124 ..      67     131 .. 0.75
   3 ?    0.6   0.2      0.51   8.7e+02      40      57 ..     126     143 ..     119     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.2e-06
    PF13432.1 18 aaleaalalaPeaaeallllaeallrlgrldeAaallraala 59
                 a+l++a+a +P++++ l  l+e+llr g   eA +ll++al+
  MMETSP0890-20130614|28883_1 10 ALLRHAIAIDPFDWRCLDTLGEFLLRNGYQTEATQLLERALQ 51
                 899*************************************95 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0053
    PF13432.1   4 ArallraGdydeAlaaleaalalaPeaaeallllaeall.rlgrldeAaallraal 58 
                  +++l+  G++de  a++ +a +l+Pe +  + + a + l ++  ++  ++ ++ al
  MMETSP0890-20130614|28883_1  69 GKNLVLTGRVDEGCALFHQAKELYPESPLPHNNAAICDLrHQQLVPLQRKNFEIAL 124
                  7888899******************9998888888888855544444445555544 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.51
    PF13432.1  40 allrlgrldeAaallraa 57 
                  +++r  +  +Aaa lra+
  MMETSP0890-20130614|28883_1 126 LAYREDQITGAAANLRAY 143
                  466889999999999987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.45   7.6e+02      22      32 ..      10      20 ..       9      22 .. 0.83
   2 !    9.4   0.0   0.00054      0.92       3      29 ..      25      51 ..      23      53 .. 0.92
   3 !   11.0   0.0   0.00017      0.29       6      33 ..      67      94 ..      62      95 .. 0.90
   4 ?   -1.8   0.0       2.1   3.6e+03      24      30 ..     120     126 ..     117     133 .. 0.54

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.45
                 HHHHHHHHH-T CS
   PF07719.12 22 eafekAleldP 32
                 ++++ A+++dP
  MMETSP0890-20130614|28883_1 10 ALLRHAIAIDP 20
                 67899*****9 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAle 29
                 +l  lG+ ++++g   eA +++e+Al+
  MMETSP0890-20130614|28883_1 25 CLDTLGEFLLRNGYQTEATQLLERALQ 51
                 6889*********************97 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00017
                 HHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  6 nlGlayyklgdyeeAleafekAleldPn 33
                  +G+ +   g+ +e  ++f +A el+P+
  MMETSP0890-20130614|28883_1 67 FRGKNLVLTGRVDEGCALFHQAKELYPE 94
                 5899999********************7 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.1
                  HHHHHHH CS
   PF07719.12  24 fekAlel 30 
                  fe Al+l
  MMETSP0890-20130614|28883_1 120 FEIALSL 126
                  4444444 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   9.9e-05      0.17      47      74 ..      24      51 ..       9      54 .. 0.66
   2 !   14.6   0.0   1.2e-05     0.021       6      77 ..      24      93 ..      19      94 .. 0.79
   3 ?    4.5   0.0     0.017        29      15      36 ..      72      93 ..      64     126 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.9e-05
    PF13424.1 47 ralnnlanlylalgdydeAleylekAle 74
                 r+l  l++ +l+ g + eA ++le+Al+
  MMETSP0890-20130614|28883_1 24 RCLDTLGEFLLRNGYQTEATQLLERALQ 51
                 5666677777777777777777777765 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.2e-05
    PF13424.1  6 tilnnlalvlrrlgdydeAlelyekalellrelg.ddhpdtaralnnlanlylalgdydeAleylekAleiae 77
                 ++l+ l+++l+r g   eA +l+e+al+  ++++ + +    ++    +  ++  g+ de  +++++A e+++
  MMETSP0890-20130614|28883_1 24 RCLDTLGEFLLRNGYQTEATQLLERALQTVELMPlPFS---PKLAVFRGKNLVLTGRVDEGCALFHQAKELYP 93
                 68999999999999999999999999999888873444...45556678888888888888888888888875 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.017
    PF13424.1 15 lrrlgdydeAlelyekalellr 36
                 l   g+ de  +l+ +a el+ 
  MMETSP0890-20130614|28883_1 72 LVLTGRVDEGCALFHQAKELYP 93
                 5566788888888888887753 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.71   1.2e+03      22      37 ..      10      25 ..       9      30 .. 0.79
   2 !   12.2   0.1   0.00012      0.21       4      30 ..      26      52 ..      23      56 .. 0.91
   3 ?    5.9   0.0     0.013        22       6      36 ..      67      97 ..      62     104 .. 0.84
   4 ?   -2.2   0.0       5.1   8.8e+03      12      25 ..     128     141 ..     118     143 .. 0.58

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.71
    PF13428.1 22 allrralalaPddaea 37
                 allr a+a +P d++ 
  MMETSP0890-20130614|28883_1 10 ALLRHAIAIDPFDWRC 25
                 79999*****988875 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00012
    PF13428.1  4 llalarallalGdpdeAiallrralal 30
                 l  l+++ll++G   eA +ll+ral++
  MMETSP0890-20130614|28883_1 26 LDTLGEFLLRNGYQTEATQLLERALQT 52
                 778*********************985 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.013
    PF13428.1  6 alarallalGdpdeAiallrralalaPddae 36
                  ++  l   G++de+ al+ +a +l+P+++ 
  MMETSP0890-20130614|28883_1 67 FRGKNLVLTGRVDEGCALFHQAKELYPESPL 97
                 577788889******************9985 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 5.1
    PF13428.1  12 lalGdpdeAiallr 25 
                   +  +  +A+a lr
  MMETSP0890-20130614|28883_1 128 YREDQITGAAANLR 141
                  44555666665555 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.28       1      32 [.      11      42 ..      11      44 .. 0.90
   2 ?    0.9   0.0      0.36   6.1e+02       7      21 ..      90     104 ..      88     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
    PF13431.1  1 lyekaleldPnnadaynnLAelllnnGdleeA 32
                 l++ a+++dP ++  +  L+e+ll+nG + eA
  MMETSP0890-20130614|28883_1 11 LLRHAIAIDPFDWRCLDTLGEFLLRNGYQTEA 42
                 5789***********************77666 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.36
    PF13431.1   7 eldPnnadaynnLAe 21 
                  el+P+++  +nn A 
  MMETSP0890-20130614|28883_1  90 ELYPESPLPHNNAAI 104
                  789********9775 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         8   1.4e+04       6      11 ..       8      13 ..       6      15 .. 0.54
   2 ?    6.6   0.1    0.0065        11       3      26 .]      25      48 ..      23      48 .. 0.89
   3 ?    5.9   0.0     0.011        20       4      26 .]      65      87 ..      62      87 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 8
                 --HHHH CS
    PF07721.9  6 aLAral 11
                 +LA + 
  MMETSP0890-20130614|28883_1  8 DLALLR 13
                 566554 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0065
                 HH---HHHHHH-------HHHHHT CS
    PF07721.9  3 allaLArallalGdldeAraller 26
                 +l  L++ ll+ G   eA +ller
  MMETSP0890-20130614|28883_1 25 CLDTLGEFLLRNGYQTEATQLLER 48
                 56679*****************98 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.011
                 H---HHHHHH-------HHHHHT CS
    PF07721.9  4 llaLArallalGdldeAraller 26
                 +++++  l + G+ de +al+++
  MMETSP0890-20130614|28883_1 65 AVFRGKNLVLTGRVDEGCALFHQ 87
                 567888999**********9875 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014      0.24       3      31 ..      24      52 ..      23      56 .. 0.93
   2 ?    0.6   0.0       0.3   5.1e+02      15      31 ..      75      91 ..      72      92 .. 0.86
   3 ?   -0.8   0.0      0.82   1.4e+03       8      13 ..     124     129 ..     116     140 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    PF13374.1  3 aalnnLAlalrargryeeAlaleeealai 31
                 ++l +L+  l + g   eA +l+e+al +
  MMETSP0890-20130614|28883_1 24 RCLDTLGEFLLRNGYQTEATQLLERALQT 52
                 599***********************986 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.3
    PF13374.1 15 rgryeeAlaleeealai 31
                 +gr +e  al+++a ++
  MMETSP0890-20130614|28883_1 75 TGRVDEGCALFHQAKEL 91
                 7999********99876 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.82
    PF13374.1   8 LAlalr 13 
                  L la+r
  MMETSP0890-20130614|28883_1 124 LSLAYR 129
                  344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 492.77
//
Query:       MMETSP0890-20130614|28897_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   14.9  10.4      0.031   13.9   7.2    1.4  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
      0.032   13.6   0.0         14    5.2   0.0    3.1  3  PF00806.14 Pumilio-family RNA binding repeat
      0.093   12.4   7.4       0.28   10.8   0.2    3.8  5  PF08144.6  CPL (NUC119) domain


Domain annotation for each model (and alignments):
>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.2   6.8e-06     0.031      51     129 ..     410     489 ..     375     503 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.8e-06
    PF05887.6  51 gaddtngtdrddepeeeeetepeeeg.eeetepeeegeeetepeeeeepepepetepepepepepepepepGaatlksva 129
                    +d+n ++++  pe+ee+++ +e + e + + +++ ++e e eee   e  pe++p+  p  +   e + G atlk++ 
  MMETSP0890-20130614|28897_1 410 DEEDSNLAENELFPEDEEDSDFDEAAfEAKLDSKPDLPDEDEEEEELVEELAPEPDPNAAPRGQAILEHDIGHATLKAIL 489
                  4578999999999*99999998766525556677777777777777777888888888889889999**********975 PP

>> PF00806.14  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0046        21      16      31 ..      48      63 ..      48      66 .. 0.91
   2 ?    5.2   0.0    0.0031        14       5      24 ..     109     128 ..     106     131 .. 0.88
   3 ?   -2.8   0.0       1.1   4.9e+03      15      25 ..     522     532 ..     522     535 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0046
   PF00806.14 16 nyvvQkllehateeqk 31
                 ++vvQ +l +a+e q+
  MMETSP0890-20130614|28897_1 48 SRVVQAMLRYADEYQR 63
                 89***********997 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0031
   PF00806.14   5 nlvqLstdqyGnyvvQklle 24 
                    ++L+++ +G+ v+  ll+
  MMETSP0890-20130614|28897_1 109 QAIKLASHSNGAKVLDFLLT 128
                  6789***********99885 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.1
   PF00806.14  15 GnyvvQklleh 25 
                  G+ v++ ll +
  MMETSP0890-20130614|28897_1 522 GALVIEALLRY 532
                  889*****987 PP

>> PF08144.6  CPL (NUC119) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.037   1.7e+02       3      34 ..     116     147 ..     100     176 .. 0.69
   2 ?   10.8   0.2   6.2e-05      0.28      29     104 ..     324     398 ..     320     419 .. 0.80
   3 ?    0.8   0.1     0.075   3.4e+02     100     137 ..     460     496 ..     448     504 .. 0.74
   4 ?   -1.4   0.0      0.36   1.6e+03      47      83 ..     490     530 ..     486     541 .. 0.66
   5 ?   -2.6   0.0      0.88     4e+03      91     127 ..     556     594 ..     535     605 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.037
    PF08144.6   3 dkyGrkvllyllaprdsahfvpeiiellkkgd 34 
                    +G kvl +ll+  d+    +++ + l++ +
  MMETSP0890-20130614|28897_1 116 HSNGAKVLDFLLTQLDAHASTKKFAQKLRNRL 147
                  46788888888888887777777777776655 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6.2e-05
    PF08144.6  29 llkkgdanafsKKdkelRrkElleaispplleaiaedaaellsdkaisvlvsdiLlsatGdsqeaiaAlaevaaee 104
                  +l+ gd    sKK   +R +E+ +a+  +l ++i+   a++l  +a+  l  ++ +s + d+ ea +A+a +a+ +
  MMETSP0890-20130614|28897_1 324 TLDLGDSLYASKKASSTRYQEITQALAQLLSSSIKVRPAHILASRAAKPLLCAAAASSQLDN-EATQAIAAAATSA 398
                  6778898899********************************99999998888888777764.4555666655544 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.075
    PF08144.6 100 vaaeelvpggkdgelhiaedpaghlvlkwLieqdkkkk 137
                  +a e+ +p +    + i e+  gh  lk +++ + k +
  MMETSP0890-20130614|28897_1 460 LAPEP-DPNAAPRGQAILEHDIGHATLKAILQHEAKAQ 496
                  44455.676666777899*********99888777544 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.36
    PF08144.6  47 rkElleaisppllea....iaedaaellsdkaisvlvsdiL 83 
                  ++E   + s+p+++a    ++  +a++++ +  ++++ + L
  MMETSP0890-20130614|28897_1 490 QHEAKAQNSAPIARAfydrVQGSIADWVQTNRGALVIEALL 530
                  66777777777776522226677788888877777776665 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 0.88
    PF08144.6  91 qeaiaAlaevaaee..lvpggkdgelhiaedpaghlvlk 127
                  ++ + Ala+   e   + +++k  +++++  + +h+   
  MMETSP0890-20130614|28897_1 556 NPGALALAKKFKEGttVASTSKSKKKRLISAATAHQSKN 594
                  555556666555531134456777888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       901  (0.0659011); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:01.53
# Mc/sec: 982.04
//
Query:       MMETSP0890-20130614|28909_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.90
# Mc/sec: 676.31
//
Query:       MMETSP0890-20130614|28914_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      450  (0.032914); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.51
# Mc/sec: 573.25
//
Query:       MMETSP0890-20130614|28923_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:00.76
# Mc/sec: 1535.56
//
Query:       MMETSP0890-20130614|28927_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.69
# Mc/sec: 1507.27
//
Query:       MMETSP0890-20130614|28922_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.7   9.6    3.9e-09   36.4   0.4    2.9  2  PF13499.1  EF-hand domain pair
    8.5e-15   52.7   6.2    0.00066   18.7   0.4    4.6  4  PF00036.27 EF hand
    2.5e-13   48.5   8.1     0.0012   18.4   0.0    4.8  4  PF13405.1  EF-hand domain
    3.3e-12   45.7   9.3    1.5e-05   24.3   0.1    3.9  4  PF13833.1  EF-hand domain pair
    2.4e-09   35.9   6.3       0.02   14.1   0.3    4.5  4  PF13202.1  EF hand


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   2.0   1.1e-10   2.9e-07       5      64 ..     656     715 ..     603     716 .. 0.92
   2 !   36.4   0.4   1.4e-12   3.9e-09       2      66 .]     734     794 ..     733     794 .. 0.95

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.1e-10
    PF13499.1   5 a..FkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64 
                  a  F+l+D  + g l++eeL  +l ++ ++  ++e+r  +++i+++lD + +G +sf+Ef+ 
  MMETSP0890-20130614|28922_1 656 AntFSLFDEYHRGVLNREELSDMLLKFADD--QDESRGHVQEIVAMLDADDSGEISFDEFYD 715
                  155*************************99..99999999999*****************97 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 1.4e-12
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  ++e+F ++D+d+ g+++ eeL + ++ +g     + + +v+++++k++D++g+G l+  Ef+ ++
  MMETSP0890-20130614|28922_1 734 IHEIFHMIDRDHGGTITIEELHQTIQSIG----LDLSLNVVYNLVKDIDEDGNGALDKHEFEILM 794
                  689**************************....8999************************8765 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.021        59       4      28 ..     657     681 ..     655     682 .. 0.85
   2 !   18.7   0.4   2.4e-07   0.00066       2      28 ..     693     719 ..     692     720 .. 0.89
   3 !   17.7   0.0   4.9e-07    0.0013       2      26 ..     734     758 ..     733     761 .. 0.89
   4 !   13.1   0.1   1.4e-05     0.039       5      27 ..     773     795 ..     769     797 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.021
                  HHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   4 eaFkefDkDgdGkIsfeEfkealkk 28 
                  + F++fD  + G ++ eE+ ++l k
  MMETSP0890-20130614|28922_1 657 NTFSLFDEYHRGVLNREELSDMLLK 681
                  56899999999**********9965 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.4e-07
                  HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkk 28 
                  ++e+ +++D D +G Isf+Ef ++ kk
  MMETSP0890-20130614|28922_1 693 VQEIVAMLDADDSGEISFDEFYDFGKK 719
                  799******************988665 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 4.9e-07
                  HHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkeal 26 
                  + e+F ++D+D+ G+I+ eE+ + +
  MMETSP0890-20130614|28922_1 734 IHEIFHMIDRDHGGTITIEELHQTI 758
                  689******************8765 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 1.4e-05
                  HHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   5 aFkefDkDgdGkIsfeEfkealk 27 
                  + k +D Dg+G +++ Ef  ++ 
  MMETSP0890-20130614|28922_1 773 LVKDIDEDGNGALDKHEFEILMY 795
                  6689**************99886 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00044       1.2       5      27 ..     658     680 ..     655     689 .. 0.90
   2 !   12.5   0.2   3.4e-05     0.092       3      25 ..     694     716 ..     692     720 .. 0.87
   3 !   18.4   0.0   4.3e-07    0.0012       2      27 ..     734     759 ..     733     763 .. 0.89
   4 !    9.8   0.1   0.00026      0.71       7      25 ..     775     793 ..     770     798 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00044
                  --GCC-------B---HHHHHHH CS
    PF13405.1   5 aFklfDkdgdGkidaeELrdaLr 27 
                   F lfD  + G +++eEL d+L 
  MMETSP0890-20130614|28922_1 658 TFSLFDEYHRGVLNREELSDMLL 680
                  59******************997 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.4e-05
                  H---GCC-------B---HHHHH CS
    PF13405.1   3 reaFklfDkdgdGkidaeELrda 25 
                  +e+  ++D d +G+i+++E+ d+
  MMETSP0890-20130614|28922_1 694 QEIVAMLDADDSGEISFDEFYDF 716
                  577789**************875 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 4.3e-07
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  ++e+F+++D+d+ G+i++eEL + ++
  MMETSP0890-20130614|28922_1 734 IHEIFHMIDRDHGGTITIEELHQTIQ 759
                  789******************98776 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00026
                  GCC-------B---HHHHH CS
    PF13405.1   7 klfDkdgdGkidaeELrda 25 
                  k +D dg+G +d++E+  +
  MMETSP0890-20130614|28922_1 775 KDIDEDGNGALDKHEFEIL 793
                  679*************765 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.034        94      31      52 ..     659     680 ..     659     682 .. 0.73
   2 !   20.9   1.2   6.7e-08   0.00018       1      52 [.     666     718 ..     666     720 .. 0.84
   3 !   10.5   0.0   0.00011      0.31      23      48 ..     730     755 ..     723     757 .. 0.90
   4 !   24.3   0.1   5.5e-09   1.5e-05       1      47 [.     745     790 ..     745     796 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.034
    PF13833.1  31 frefDtdgdGkisfeEFcvlle 52 
                  f++fD  + G ++ eE  ++l 
  MMETSP0890-20130614|28922_1 659 FSLFDEYHRGVLNREELSDMLL 680
                  6778888888888888777765 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 6.7e-08
    PF13833.1   1 ekGlItreeLkralall..glkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                  ++G++ reeL+++l ++   ++  s   v++++ ++D+d++G isf+EF+++ +
  MMETSP0890-20130614|28922_1 666 HRGVLNREELSDMLLKFadDQD-ESRGHVQEIVAMLDADDSGEISFDEFYDFGK 718
                  5899********9955533333.99999**********************9865 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00011
    PF13833.1  23 seeevdilfrefDtdgdGkisfeEFc 48 
                  s++ ++++f+++D+d+ G i+ eE +
  MMETSP0890-20130614|28922_1 730 SKQLIHEIFHMIDRDHGGTITIEELH 755
                  7899*****************99976 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 5.5e-09
    PF13833.1   1 ekGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEF 47 
                  ++G It eeL+  ++++gl+ ls + v+ l++ +D dg+G++++ EF
  MMETSP0890-20130614|28922_1 745 HGGTITIEELHQTIQSIGLD-LSLNVVYNLVKDIDEDGNGALDKHEF 790
                  5899**********888***.************************** PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22     6e+02      14      24 ..     668     678 ..     668     680 .. 0.83
   2 !   14.1   0.3   7.2e-06      0.02       7      24 ..     699     716 ..     694     717 .. 0.90
   3 !   12.1   0.0     3e-05     0.082       4      21 ..     737     754 ..     733     758 .. 0.88
   4 !    8.6   0.2   0.00038         1       6      22 ..     775     791 ..     773     794 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.22
                  --B-HHHHHHH CS
    PF13202.1  14 GkIsreELkrl 24 
                  G ++reEL+ +
  MMETSP0890-20130614|28922_1 668 GVLNREELSDM 678
                  889*****874 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 7.2e-06
                  HH--S----B-HHHHHHH CS
    PF13202.1   7 afDlNgDGkIsreELkrl 24 
                   +D++ +G Is++E++ +
  MMETSP0890-20130614|28922_1 699 MLDADDSGEISFDEFYDF 716
                  68*************976 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 3e-05
                  HHHHH--S----B-HHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreEL 21 
                  +F  +D +  G+I++eEL
  MMETSP0890-20130614|28922_1 737 IFHMIDRDHGGTITIEEL 754
                  799**************9 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.00038
                  HHH--S----B-HHHHH CS
    PF13202.1   6 rafDlNgDGkIsreELk 22 
                  + +D +g G +++ E++
  MMETSP0890-20130614|28922_1 775 KDIDEDGNGALDKHEFE 791
                  579*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1014  (0.0741662); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.62
# Mc/sec: 3099.80
//
Query:       MMETSP0890-20130614|28956_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 803.78
//
Query:       MMETSP0890-20130614|28969_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 808.77
//
Query:       MMETSP0890-20130614|28982_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       141  (0.010313); expected 273.4 (0.02)
Passed bias filter:                      136  (0.00994734); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.29s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|28984_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.71
# Mc/sec: 590.65
//
Query:       MMETSP0890-20130614|28991_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-11   43.4   0.0    4.1e-11   42.7   0.0    1.3  1  PF13527.1  Acetyltransferase (GNAT) domain
    2.1e-08   34.1   0.0    3.8e-08   33.2   0.0    1.4  1  PF13508.1  Acetyltransferase (GNAT) domain
    7.9e-08   32.1   0.0    1.5e-07   31.2   0.0    1.4  1  PF00583.19 Acetyltransferase (GNAT) family
    0.00084   19.3   0.0     0.0016   18.4   0.0    1.4  1  PF13673.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.029   13.9   0.0      0.071   12.7   0.0    1.6  1  PF08445.5  FR47-like protein
       0.15   11.8   0.0       0.23   11.2   0.0    1.4  1  PF13523.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF13527.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.8e-14   4.1e-11      10     125 ..      10     131 ..       2     133 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.8e-14
    PF13527.1  10 ldeilellkyvFqdeespl......keireakrnlleegrvlgaedngklvgqlallpfelnvpGkelpaagvtgVatapehrgrgllrkLlarlleemrergqplsilfPssypiYrrfGy 125
                  +++ l++++++F+   +p       +++ ++ +++l +   + +  + k+ g++ +++ ++++ +  +p+ + + Va+ pe++g+g+ ++L+ +++e+++++g+   + +   +++Y + G+
  MMETSP0890-20130614|28991_1  10 YEQTLDIFREAFWNLYQPGcdehltAKLIRESDDYLPQYSLVALNHEKKVLGCILYTKSRIEYEDHMVPMVTFGPVAVTPEYQGQGIGSRLISESIERIKKDGIYGGVVILGYPHVYAKHGF 131
                  68999************99999998667777788887777777777999*****************************************************98644333333567777776 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.7e-11   3.8e-08       3      77 ..      48     131 ..      46     133 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.7e-11
    PF13508.1   3 ehflvleddgeivGflvl....redgeta....yiggvavdpeyrgkGlGskllnklkeeygekpiv....llarparkkFYeklGF 77 
                  + +++l++++++ G++ +    +e++++       g vav pey+g+G+Gs+l+++  e++++++i+    +l  p     Y+k+GF
  MMETSP0890-20130614|28991_1  48 YSLVALNHEKKVLGCILYtksrIEYEDHMvpmvTFGPVAVTPEYQGQGIGSRLISESIERIKKDGIYggvvILGYP---HVYAKHGF 131
                  568999********9999899966665334666999***************************9997443233344...66777777 PP

>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   6.6e-11   1.5e-07       4      82 ..      56     131 ..      53     132 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 6.6e-11
                  TTEBEEEEEEEEECTTS.CS.TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHHTTHSEEEEEE.ETTCHHHHHHHHHTT- CS
   PF00583.19   4 dgelvGfaslsvigedg.ra.ertayieglaVspeyrgqGiGkaLleallekarerglerielev.esgndraiklYeklGF 82 
                  + ++ G++ +++   +  ++ ++ +    +aV pey+gqGiG++L+ + +e+ ++   ++i+ +v + g +   ++Y k GF
  MMETSP0890-20130614|28991_1  56 EKKVLGCILYTKSRIEYeDHmVPMVTFGPVAVTPEYQGQGIGSRLISESIERIKK---DGIYGGVvILGYP---HVYAKHGF 131
                  668889999998888765457999999****************************...7777776455566...88888887 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     7e-07    0.0016       3      97 ..      11     113 ..      10     117 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7e-07
    PF13673.1   3 palaalvsdviesqradtseeqvaawrlleaelkeilad.gsstivvaerggevvGfaglk.....pdas....lsl..lyvrpeargrGigraLldaieaeark.gi 97 
                  ++  +++++++++ ++       ++  l+++ ++e  +  ++ ++v+++++++v G ++++      +++    +++  ++v pe++g+Gig+ L+ +  ++++k gi
  MMETSP0890-20130614|28991_1  11 EQTLDIFREAFWNLYQPG----CDE-HLTAKLIRESDDYlPQYSLVALNHEKKVLGCILYTksrieYEDHmvpmVTFgpVAVTPEYQGQGIGSRLISESIERIKKdGI 113
                  667788888888855433....333.255666666666634457888999999****99874433236669888444459*****************99999987565 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05     0.071      24      55 ..      82     113 ..      75     120 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-05
                  ----EE-GGG--------HHHHHHHHHH---S CS
    PF08445.5  24 lgalqvlpehrrrGlgsrlvkalakeiaergk 55 
                   g + v pe +++G gsrl+++ +++i + g+
  MMETSP0890-20130614|28991_1  82 FGPVAVTPEYQGQGIGSRLISESIERIKKDGI 113
                  57799**********************99987 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.23      69     118 ..      67     119 ..      20     140 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
    PF13523.1  69 kedydaad...sdrgfhllvaeprargkgltrawlrsllhylfadprtervvv 118
                  k+  +++d    +++f++ ++ p++ g+g++++++ + ++ +++d  +  vv+
  MMETSP0890-20130614|28991_1  67 KSRIEYEDhmvPMVTFGPVAVTPEYQGQGIGSRLISESIERIKKDGIYGGVVI 119
                  3333556622246799***************************9988876664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 826.57
//
Query:       MMETSP0890-20130614|28997_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-23   82.4   0.0    3.4e-23   81.8   0.0    1.3  1  PF02931.18 Neurotransmitter-gated ion-channel ligand binding domain
    3.3e-08   33.5   0.0    5.4e-08   32.8   0.0    1.3  1  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF02931.18  Neurotransmitter-gated ion-channel ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0     5e-27   3.4e-23       9     215 ..      37     248 ..      31     249 .. 0.80

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 5e-27
                  XXX..XXXXXXXX....XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GGG....----XXXXXXXX...XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXSXXXSS.SSSXSXXXXXXXXXXXXX CS
   PF02931.18   9 len..YdkrvrPv....enesk.pvdVkvelslsqiidvdeknqeltlnvwlrqkWtDerLawdped....yggikslrlpsd...kiWlPdivlyNkadgeheitekntnlriesdGkvllspraivkssCsidlkkFPfDeqnCslkfeSwtyngeeidlkwkekkevvekeeidlsdflengewelveveakrkekktgeyselsysditftlvlrRk 215
                  l+   Ydk++rP+    ++ +  +  V+v++ l+++ +v+e + +++ + +lr++W+D+rL++++ +    +g   +  l++d   +iW Pd+++ N ++ e++ + ++  + i++dG+v  s  + + + C+i++k  P+D+++C++ ++ ++ n + ++lk +++        +d  + l n +w l+e++    + + g++ +  +  + +++ +rR+
  MMETSP0890-20130614|28997_1  37 LSPdvYDKSERPSvaeyNELDApADLVTVQIELTSF-AVNEIDLTVNPRGLLRYRWQDKRLQYESPSaencSGYAPEWILSDDarnSIWRPDLYFENLREVEFSDDSESAGTWIYPDGSVFDSRFLNTIFDCPIKVKRIPLDRHTCKIRIGAYSLNDQSLELKAHHTF------PLDARKTLDNAIWALKETRGVDIKINFGQVGD--FDFVDLEMDIRRR 248
                  55556*******965542222223447888888865.8*************************977633444444455666669*************77777777779*********************************************************965......59999999999999999886655555565555..4577788888876 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   7.9e-12   5.4e-08       4     187 ..     259     508 ..     257     527 .. 0.65

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 7.9e-12
                  HHHHHHHHHHHHHHHHHH--.SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----THHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------.----------........................................................................--------------------------------------- CS
   PF02932.11   4 PcvlisiLsvlvFyLpsdagpekvtLgItvlLtlTvflllireilPktSlvipligkyllftmivvtllieiavvvlnvhhrsprthkmpewvrrvfldklprllfmkrpstakqnqakknesakksanss.rleselgkepkk....................................................................sqvkvkvkegsgaetstsekksasskgeseaelspelkkav 187
                  P vl   +    F++++   p++vt++I  +L +  +l  i ++l  +S++i l  ++++++ +    + e+a v ++++++  ++h+ ++     + d++ r    +r +++ q+ ++ ++++k+++ ++      +  +p+k                                                                    +q   +v e+ ++ ++t++ ++ s++   ++ ++p+l++ +
  MMETSP0890-20130614|28997_1 259 PGVLFLLVGYCGFFMDRHLAPARVTIAIIPVLIMRLLLNGIFARLETVSYAIYLSQFLIICMYLSCFCVFEYALVSVFLQCEHVAQHRRKSLKS--LGDRVVRAA-ISRLEQKVQKVHTMQQKQKEETDTPpPIIARQISHPSKhldsleqtttefeqfeadirtkrefishgdgsielrpgesihsinalnsirnsnkkaralqrlgsgqrHQSWYHVVEHDTEDSDTDNDDDPSNSTYFHSDYNPALERDL 508
                  666677777778***************************************************************9999877776664443332..224444444.222222222222222222222222201111111111113444555555567777777777777777777777777777777777777777777777777777766666666666666666666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       921  (0.067364); expected 273.4 (0.02)
Passed bias filter:                      553  (0.0404476); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:01.13
# Mc/sec: 1120.40
//
Query:       MMETSP0890-20130614|29017_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.78
# Mc/sec: 270.36
//
Query:       MMETSP0890-20130614|29029_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00025   20.1   0.0       0.33   10.1   0.0    2.2  2  PF00240.18 Ubiquitin family
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.026   14.1   0.0    1.5  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
      0.029   14.0   0.0      0.044   13.4   0.0    1.4  1  PF13881.1  Ubiquitin-2 like Rad60 SUMO-like


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00038       1.7       5      25 ..      32      52 ..      28      58 .. 0.85
   2 !   10.1   0.0   7.2e-05      0.33      38      60 ..      71      93 ..      67      99 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00038
                 SEEEEEEECTTSBHHHHHHHH CS
   PF00240.18  5 gktitlevepsdtvselKeki 25
                 g+  ++e++++ t++elK k 
  MMETSP0890-20130614|29029_1 32 GQISSFEIDSKATIRELKVKM 52
                 66778*************996 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 7.2e-05
                 EEE---BETTTSBTTTTTT-TTE CS
   PF00240.18 38 LiysGkvLeDdrtlseyniqdgs 60
                 L + Gk LeD+ tl++ +i d+s
  MMETSP0890-20130614|29029_1 71 LSFLGKKLEDEATLESSGIVDRS 93
                 899***************99887 PP

>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.7e-06     0.026       4      69 ..      26      96 ..      23      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.7e-06
                 EEEESSS--EEEEEETTSBHHHHHHHHHHHHT----....TT-E.EE----B--TTSBGGGSS--TTEEEE CS
    PF11976.3  4 vlkgkdgkevkikVkpdttlskLieayrkkkgipee....eqvr.LiFDGerLdpndtvedldiedgdtid 69
                 +++ ++g+  +++++++ t+++L+ +  ++  ++      ++vr L F G++L++++t+e+ +i d + +d
  MMETSP0890-20130614|29029_1 26 TVRYASGQISSFEIDSKATIRELKVKMTSAAALDDLgddiKSVRvLSFLGKKLEDEATLESSGIVDRSCLD 96
                 66777777788999999999999999998888887666675554499*******************99887 PP

>> PF13881.1  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.7e-06     0.044       4      73 ..      24      91 ..      21     125 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.7e-06
                 EEEEEE----EE-EEEE-TT-BHHHHHHHHHHHS-TT------SGGGEEEE--.--B--TTSBGGGGS--T CS
    PF13881.1  4 eikfrlvdGkDigpfkfseattvaelkekvlaeWpkekeskpksandlklila.GkiLednktLkelrlpl 73
                  + +r ++G+ i  f+ ++++t+ elk k+ +    +      +++++++ +  Gk Led+ tL++++++ 
  MMETSP0890-20130614|29029_1 24 IVTVRYASGQ-ISSFEIDSKATIRELKVKMTSAAALDDL--GDDIKSVRVLSFlGKKLEDEATLESSGIVD 91
                 5778999***.*******************996555544..4799999999755**********9997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 613.86
//
Query:       MMETSP0890-20130614|29033_1  [L=1034]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-08   32.2   1.1    1.7e-06   27.4   0.8    2.4  1  PF00644.15 Poly(ADP-ribose) polymerase catalytic domain
     0.0036   16.6   0.0      0.021   14.2   0.0    2.2  2  PF07653.12 Variant SH3 domain


Domain annotation for each model (and alignments):
>> PF00644.15  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.8   2.5e-10   1.7e-06      34     202 ..     848    1023 ..     833    1026 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 2.5e-10
                   EEEEEEEEEE---CCCCGCCGG.......................SS-........EEEEEE---GGG-------------TTS-----------EEBSSHHHHHGGG---SS.S----EEEEEEE---EEE-SS--T-SS------EEE----EEEGG.EE---E----EEE----S-S...-SB--EEESSGGGEEEEEEEE CS
   PF00644.15   34 kileifrvqregeaerfqekkk.......................lrn........rrlLwHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSanYcktsea.ngeglllLaeValGdikeltkadylekakkgkksvkgkgktepesivekdgvPlgkssatkyesse...leyneyvvydkeqvrlkYLle 202 
                   +++ei r+++ ++++ +++k+                        + +        r   +HG+  ++ ++i  +G+  ++ +++ t    GkG Yf+ +a+ +   ++++ + ++ + +l++++  G                  + + + g  +p     + + P ++      ++++    e+ ++v y++ q++++Y+++
  MMETSP0890-20130614|29033_1  848 DVVEILRIENLQLWRPYATKRLstveaenailskqqkqekdisikK-KkidnsdieRSPVFHGTTNDAAHKIAIEGF--NRDFTSATHSQHGKGAYFSIQAAHACFHTFAKPDdKSVQHVLVCRIVSGS-----------------YTTGSPGLVAP---PFRPDAPHRRF-----DTTVddpDEPAIFVTYSDYQAYPEYMVK 1023
                   6888999999999999988877888888888887766655555541.15666778899*******************..888888888****************9665554330455668999998888.................44444444444...22233333322.....2222223466666666666666666665 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.22   1.5e+03      11      27 ..      93     109 ..      85     120 .. 0.76
   2 !   14.2   0.0     3e-06     0.021      14      54 ..     708     766 ..     696     767 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.22
                  SS-----B----EEEEE CS
   PF07653.12  11 edpeeLslkkGDvikvl 27 
                  +++e Lsl ++++i  l
  MMETSP0890-20130614|29033_1  93 SKNENLSLDEDEIILFL 109
                  36666********9866 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3e-06
                  --......--B----EEEEE....E-S--..--BEEEE..-.........TT---B--HHHHH CS
   PF07653.12  14 ee......LslkkGDvikvl...gskesd..gwweges..g.........GrvGlfPsslVee 54 
                  ++      L+lkkG ++ v+   +    +  +w++g+   +         +  G+fP  +V++
  MMETSP0890-20130614|29033_1 708 KDlstrdcLHLKKGMLVSVIyehP----EteDWRYGREiiTsankivqnnNDAGWFPMACVQP 766
                  44566667************4331....2457777766553444555555777********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       719  (0.0525892); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.46u 0.36s 00:00:01.81 Elapsed: 00:00:01.27
# Mc/sec: 1951.05
//
Query:       MMETSP0890-20130614|29046_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-32  111.5   0.1    3.8e-32  111.3   0.1    1.1  1  PF05368.8  NmrA-like family
      7e-11   42.3   0.0      9e-11   41.9   0.0    1.2  1  PF13460.1  NADH(P)-binding
    0.00012   21.9   0.4    0.00023   20.9   0.2    1.6  2  PF01113.15 Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.039   12.9   0.0      0.067   12.2   0.0    1.4  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
      0.046   13.0   0.0      0.081   12.2   0.0    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.1   1.4e-35   3.8e-32       1     228 [.      38     263 ..      38     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 111.3 bits;  conditional E-value: 1.4e-35
                  EEESS----HHHHHHHHHHH.---EEEEE-S-----HHHHHHHSTTEEE---TT-HHHHHHHH--..--EEEE---TT-......--TTT---HHHHHHHH--.-SEEEEEE---GG.G-.------TTTHHHHHHHHHHHH----EEEEE---BGGG-BSSS-SBEEE----.-EEEEESS-TTS-EE-HHHH---HHHHHHH--TTT.---EEE--SEEE-HHHHHHHHHHHHTS- CS
    PF05368.8   1 ilviGaTGrqGksvvraslk.aghkvralvRdlkselakslkaaGvelvegdlddkeslvealkg..vdvvfsvttfve......skeiedgkklvdAakeaG.vkrfvpSelgndndrsnaeePavplfdeKaeveeyiralgipyTfvyagffmenflsllaqvgdlepsrdkvvllgpgnpkavlldkeeDiGtfvikilkdprklnkgkrirlaanilsgnevvelfekkigkt 228
                  ilviG+TGr+G  v +a+   ++++v+  +R + +   k+l++ Gv+ ++ ++ + es+ +alk+  + +vf+vt f+       + e+  g+ +++A ke+G + ++v+++++++++      P+v++f++K + ee ++ +g+ y+ +++ +f en+   +a+++ l++++ k  + +      +++ + +Di+++++ ++kdp+k+ +g++i+  +  + g+e++++++k+ g +
  MMETSP0890-20130614|29046_1  38 ILVIGSTGRVGTEVCKALKVaNDFSVFGATRTVPN---KKLEDMGVKAIKFEFGSMESMISALKEsnATMVFMVTDFWVaanqkfDVEVSHGMMMIQAMKEIGtIEHVVFNSVADAEKT----PPEVQHFATKLKLEEELKLSGLSYSVLRPVAFLENLDD-PANMNPLTKGTVKCLWDASLT--LKMV-ACADIAKAAVLMFKDPKKF-QGQIIDCVGCQVNGDEIAQALSKASGVR 263
                  9****************96559*********8765...689999*******************9722568*******99999999*******************************944....5**********************************999.555566666665555555555..6666.77*****************.***********************99865 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   3.3e-14     9e-11       1     180 [.      38     228 ..      38     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 3.3e-14
    PF13460.1   1 IaviGAtGktGrrivkellarg.hevtalvRnps..klpessgvtivkkDlfdledlaeala..gvdvvvdaf.....garpe...d..regvkhlldalkaag.vrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelleasgldwtivrPaalfea...eettyelite......gdpagesaisraDvAaalvde 180
                  I+viG tG++G ++ k l  ++ ++v    R+    kl+ + gv+++k+     e++ +al+  ++ +v+ ++     +   +   d  +++   +++a+k+ g ++++v+ s a +++ +p+           + ++ k + ee l+ sgl + ++rP a+ e+   +++   l+++      +     + ++ aD+A+a+v +
  MMETSP0890-20130614|29046_1  38 ILVIGSTGRVGTEVCKALKVANdFSVFGATRTVPnkKLE-DMGVKAIKFEFGSMESMISALKesNATMVFMVTdfwvaA---NqkfDveVSHGMMMIQAMKEIGtIEHVVFNSVADAEKTPPEV----------QHFATKLKLEEELKLSGLSYSVLRPVAFLENlddPANMNPLTKGtvkclwDASLTLKMVACADIAKAAVLM 228
                  9*****************66555********95512444.79********************55577777777555432...1334455888899*******9768899999999999987773..........57999*************************97643443333333335443334455999999999998865 PP

>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   8.4e-08   0.00023       2      48 ..      37      83 ..      36     133 .. 0.71
   2 ?   -4.0   0.0       4.3   1.2e+04      13      29 ..     249     265 ..     248     269 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.4e-08
                 EE--B--------HHHHHHHH.---EE-EE-----............. CS
   PF01113.15  2 kvavvGasGrmGkevikaieeaedlelvaavdrkeselegkdag.ell 48
                 +++v+G +Gr+G+ev+ka++ a+d+ + +a  + + +++ +d+g +++
  MMETSP0890-20130614|29046_1 37 SILVIGSTGRVGTEVCKALKVANDFSVFGATRTVP-NKKLEDMGvKAI 83
                 699***************************99999.555566663222 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 4.3
                  --HHHHHHHH.---EE- CS
   PF01113.15  13 Gkevikaieeaedlelv 29 
                  G e+++a+++a++++ v
  MMETSP0890-20130614|29046_1 249 GDEIAQALSKASGVRCV 265
                  77888888888877766 PP

>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.5e-05     0.067      27      85 ..      26      85 ..       7     105 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
                 GCG-B-.GGGSEEE-B-.------HHHHHHH.H---EEEE--SS--...HHHH---EE--C CS
   PF02826.14 27 kallgkelsgktvGiiG.lGrIGqavakrlk.afgmkvlaydrskkkeeeeeelgaevvsl 85
                 + ++ ++ + k++ +iG +Gr+G++v k lk a ++ v++  r+  +++ +e++g++  ++
  MMETSP0890-20130614|29046_1 26 RIVMFRSKETKSILVIGsTGRVGTEVCKALKvANDFSVFGATRTVPNKK-LEDMGVKAIKF 85
                 4455566678888888868************999**********87666.77766655444 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05     0.081       1      75 [.      38     111 ..      38     157 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3e-05
                  EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH.TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S- CS
   PF01370.16   1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri.rvelveldltdkdalerlfaeeqpdaVihlAae 75 
                  ilV+G tG +G+ +++al+ ++     + ++tr+ ++++ +   v+ ++    + +++  +++e++ + V+ +  +
  MMETSP0890-20130614|29046_1  38 ILVIGSTGRVGTEVCKALKVANDF--SVFGATRTVPNKKLEDmGVKAIKFEFGSMESMISALKESNATMVFMVTDF 111
                  8*******************9999..66666666655555445677777778888888899998888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.74
# Mc/sec: 1123.70
//
Query:       MMETSP0890-20130614|29060_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-14   52.7   2.3    3.9e-08   32.7   0.1    3.7  4  PF00400.27 WD domain, G-beta repeat
     0.0034   15.5   0.0     0.0078   14.3   0.0    1.5  1  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   5.7e-12   3.9e-08       8      39 .]      27      59 ..      23      59 .. 0.97
   2 ?   -3.1   0.0       1.1   7.5e+03      16      30 ..      78      90 ..      78      92 .. 0.64
   3 ?    3.0   0.0     0.014        95      14      30 ..     108     144 ..      98     148 .. 0.82
   4 !   14.7   0.0   2.8e-06     0.019      13      39 .]     171     197 ..     161     197 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 5.7e-12
                 ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  8 rgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                 +gH++ + +++f+ + +++las+++D+ti +Wd
  MMETSP0890-20130614|29060_1 27 HGHSNRIFSLKFDSSdPNILASAGWDNTIQIWD 59
                 69******************************9 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.1
                 EEEEESSSTEEEEEE CS
   PF00400.27 16 cvafspdgpllasgS 30
                 ++++s+d   ++ gS
  MMETSP0890-20130614|29060_1 78 SLDISDD--NILAGS 90
                 5777888..566666 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.014
                  EEEEEEESS....................STEEEEEE CS
   PF00400.27  14 Vtcvafspd....................gpllasgS 30 
                  V+ +++s +                    + +la g+
  MMETSP0890-20130614|29060_1 108 VRTIDWSSSylskqeplmvyaaqyskptnSEFLAAGG 144
                  999*****98888888888888888888888888877 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 2.8e-06
                  SEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgSrDgtirlWd 39 
                  +V  ++f+p+g++l  ++ D tir+ d
  MMETSP0890-20130614|29060_1 171 GVFTLDFAPNGRRLSVAGGDATIRIID 197
                  7899********************966 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-06    0.0078     193     315 ..       8     139 ..       4     160 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-06
    PF11715.3 193 ssswlsslrgllgfkyrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqclrttdil..............eaaellpadslsyipepsesslirvislaflpsradssgsrllvvtyspasagef 315
                  ++++ s+l+g +gf +++++  s++  sl+++s   ++ +++++   D+++++W+ +    +rt+  +               a ++ p+++l  ++ +  ++l r i    ++ + +++  ++++ +ys ++ +ef
  MMETSP0890-20130614|29060_1   8 TRQLVSTLKGGFGFGLKGEHGHSNRIFSLKFDS---SDPNILASAGWDNTIQIWDCRQERSVRTIYGPhlcgdsldisddniLAGSWKPTEQLQIYSLST-GQLVRTIDWSSSYLS-KQEPLMVYAAQYSKPTNSEF 139
                  5678899**************************...9************************999999999999999988888777788888888877777.555555533333333.55666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.53
# Mc/sec: 963.06
//
Query:       MMETSP0890-20130614|29075_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   12.0   0.0       0.12   11.7   0.0    1.2  1  PF14090.1 Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF14090.1  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-06      0.12      23      49 ..      20      47 ..       5      53 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.8e-06
    PF14090.1 23 relgitr.laaRIheLRkkGyeIktrrv 49
                  el  t+   a I+ LR++G +I+++r+
  MMETSP0890-20130614|29075_1 20 HELMYTDgVEAKIMTLRHDGSSIQEKRE 47
                 555555557899*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 255.35
//
Query:       MMETSP0890-20130614|29078_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-06   26.7   0.1    0.00014   21.6   0.0    2.3  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
     0.0011   18.4   0.0       0.06   12.8   0.0    2.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.1e-08   0.00014       1      64 [.      13      89 ..      13      91 .. 0.83
   2 ?    2.7   0.0     0.017   1.2e+02      12      59 ..     115     163 ..     108     168 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.1e-08
    PF14259.1  1 lyvrglppsvteedlreffspygkvegvrip.........rnkd.grgrgf..AfvefeseedAqkalkkln.lvlk 64
                 +y++ +pp + + ++++++s++g v+++ +          r k  + g+++  +++ef++++ A+++ k ln + ++
  MMETSP0890-20130614|29078_1 13 VYMSRVPPRMGPRKVKQMLSGFGEVTRIFLQeedasltrrRQKAgKHGKRYveGWIEFADKKLAKRVAKSLNaTAMG 89
                 89***********************9998888888888874444444555555******************966554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.017
    PF14259.1  12 eedlreffspygkvegvrip....rnkdgrgrgfAfvefeseedAqkalkkl 59 
                   e lre ++   +v++ +++    r k+   +++ +v++++ +   +a+++ 
  MMETSP0890-20130614|29078_1 115 WEHLREKVAYERRVQSHKLKmrvaRAKQ---TNDEYVQMADDAKTFAAIEAR 163
                  5666666666666765555522335554...999*******99999999875 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.7e-06      0.06       1      61 [.      13      85 ..      13      90 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.7e-06
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES............TTSSEE-EEEEEESSHHHHHHHHHHHTT CS
   PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrd............etgrskgfafVeFeseedaekAlealng 61
                 ++++ +pp +  +++k+++s+fG++++i l  +            ++g++   + +eF+++  a+++ ++ln 
  MMETSP0890-20130614|29078_1 13 VYMSRVPPRMGPRKVKQMLSGFGEVTRIFLQEEdasltrrrqkagKHGKRYVEGWIEFADKKLAKRVAKSLNA 85
                 79999*********************99875544332222334556677777788888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       978  (0.0715331); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 732.80
//
Query:       MMETSP0890-20130614|29082_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   12.0   1.4      0.075   11.8   1.0    1.1  1  PF06406.6 StbA protein
      0.067   13.3   4.0       0.15   12.2   2.6    1.6  2  PF08775.5 ParB family
       0.42   10.6   3.4        2.2    8.3   2.4    2.0  1  PF10367.4 Vacuolar sorting protein 39 domain 2


Domain annotation for each model (and alignments):
>> PF06406.6  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.0   1.6e-05     0.075     228     267 ..      28      68 ..      15      82 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.6e-05
                  TTT-HHHHHHHSSSHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
    PF06406.6 228 nRndeeylkqlindedkrdsvlevineavkkLker.viral 267
                  +R+ ++ l ++i ++++r+ +++vi+++++  +er ++r++
  MMETSP0890-20130614|29082_1  28 ERKSNSILVKNIANQEQRERIMAVIEQEIQVERERqINRKI 68 
                  6999***********************99976554155555 PP

>> PF08775.5  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.6   3.3e-05      0.15      29      80 ..      20      72 ..       9      90 .. 0.82
   2 ?    1.0   0.1     0.097   4.4e+02      43      65 ..      68      90 ..      61     101 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
    PF08775.5 29 ldelvekvkeeikdies.elsedeakkeilklikkelkalkekkkkdkakvee 80
                 ld l  +++ + + i + + +++e++++i+++i++e++ + e + + k  +  
  MMETSP0890-20130614|29082_1 20 LDVLRPEIERKSNSILVkNIANQEQRERIMAVIEQEIQVERERQINRKIAIAA 72
                 555667888888888889*********************99999888776655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.097
    PF08775.5 43 ieselsedeakkeilklikkelk 65
                 i++   e+e+++++lk ik+ ++
  MMETSP0890-20130614|29082_1 68 IAIAAMEQERQDRMLKDIKADAN 90
                 33445578888888888887665 PP

>> PF10367.4  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.4   0.00049       2.2       7      67 ..      10      82 ..       4     103 .] 0.68

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00049
    PF10367.4  7 hgekldplsvLdl............LPdslplkelesflekalrasvekkresqvvknllkaeklqveeellk 67
                 h++    +svLd+            L +++  +e ++ ++ +++++++ +re+q+ +++  a++ q +++++ 
  MMETSP0890-20130614|29082_1 10 HAQPCALASVLDVlrpeierksnsiLVKNIANQEQRERIMAVIEQEIQVERERQINRKIAIAAMEQERQDRML 82
                 5566666777777555555555555666666666777788888888888888888888887777777777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1400  (0.102399); expected 273.4 (0.02)
Passed bias filter:                      665  (0.0486396); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.44s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 357.72
//
Query:       MMETSP0890-20130614|29120_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   30.7   2.0    4.1e-07   29.1   1.4    1.9  1  PF00467.24 KOW motif
  ------ inclusion threshold ------
      0.071   12.4   0.1       0.12   11.6   0.1    1.4  1  PF11623.3  Protein of unknown function (DUF3252)


Domain annotation for each model (and alignments):
>> PF00467.24  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.4     6e-11   4.1e-07       1      32 []      28      59 ..      28      59 .. 0.96

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 6e-11
                 TTBEEEE-----TT-EEEEEEEETTTCEEEEE CS
   PF00467.24  1 kGdyVrvisGpfkGrpGkvvevdrskarVvve 32
                 +Gd+V v+ Gp++G+ G++v+v+r+k+ V++e
  MMETSP0890-20130614|29120_1 28 RGDKVAVVNGPYRGQRGTIVKVFREKNVVLIE 59
                 69*************************99997 PP

>> PF11623.3  Protein of unknown function (DUF3252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.8e-05      0.12       7      50 ..      31      72 ..      25      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.8e-05
                 -EEE--TTSTTBT----EEEE----EEEEEE----EEEEEE-ST CS
    PF11623.3  7 tVkVknpndiYygyeGlVQrvsdgkaaVLFeGgnWdklvtfrls 50
                  V V   n  Y+g +G + +v ++k  VL eG n  k + ++++
  MMETSP0890-20130614|29120_1 31 KVAVV--NGPYRGQRGTIVKVFREKNVVLIEGVNMRKRLIINPE 72
                 55554..579************************9988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 730.50
//
Query:       MMETSP0890-20130614|29139_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-15   56.1   0.0    3.5e-11   43.4   0.0    2.2  2  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.5e-15   3.5e-11       2      72 ..      52     123 ..      51     134 .. 0.86
   2 !   10.8   0.0   3.7e-05      0.51       4      70 ..     167     232 ..     164     245 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.5e-15
                  --EEEEETTEEEEEEE-------S-EEEEE----EEEEE---.....EEE---BSS-EEEEEEEEEE---EE CS
   PF04969.11   2 rydWyQtleeVtitipvkgvikkedvkveikkkslkvsikgpge.keyllegeLfgeIdpeesswkiedtki 72 
                  ry W+Q ++++++t+p+++v++++dv+  i++ +l ++i   +  +   ++g+++g+I+pe+s+w i+++ i
  MMETSP0890-20130614|29139_1  52 RYRWTQDNSHIFLTVPLPKVVPQKDVSLIISPYDLALQIIFAKLgEFRGINGQFAGDIQPEASRWEIKQDDI 123
                  8**********************************99998866645578*******************9944 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.7e-05
                  EEEEETTEEEEEEE-------S-EEEEE----EEEEE---....EEE---BSS-EEEEEEEEEE--- CS
   PF04969.11   4 dWyQtleeVtitipvkgvikkedvkveikkkslkvsikgpgekeyllegeLfgeIdpeesswkiedt 70 
                   ++Q l+   ++++++  i+ +d++   ++++ +++i++  +++  + g+++g + p++ sw + d+
  MMETSP0890-20130614|29139_1 167 RFSQHLNLFHVELDLPIHINISDISLRTTSDTWRLQIRN-YNQDQPIYGQFYGRVYPDDTSWLLDDN 232
                  577888877888899999999****************99.34666699**************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.62
# Mc/sec: 1082.23
//
Query:       MMETSP0890-20130614|29151_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-23   83.0   0.0    3.9e-23   82.0   0.0    1.5  1  PF00141.18 Peroxidase


Domain annotation for each model (and alignments):
>> PF00141.18  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.9e-27   3.9e-23      33     229 .]       1     194 [.       1     194 [. 0.87

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 2.9e-27
                  TTTTGGGSTTGGG-----.--HHHHHHHHHHHHHSTT.....S-HHHHHHHHHHHHHHH----.-..--EE----------......--..........HHHHHHHHH----HHHHHHH---.TT-----TT......................T--...-..-------THHHHHHHH....................--EE-HHHHHHHHSHHHHHHHHHHHH- CS
   PF00141.18  33 cdgsvlllapektapaNa.slrkgldvldaikakleaacpgtvScADlialaardavelaggp.lv.pvslGRrDatessa.sevsnlP....dpkasadelrdkfarkgltdeelvaLsGa.HtiGkahcssfsrlyaaadpaldaayagekCasgntevdldtptkfdnsyfknlle....................krgllrsDlallsdsetralvekyars 229
                  c+g+++l  p  +++     +++g  +l+++++++++     +S+ADli+la+ +a+e ++   l  +++ GR+D++e sa +++   P    + +++ad l++   r gl+ ++ vaL+Ga ++iG+a       +y            g         v+  +p  +dn yf+nll+                    +  ++++D + + d+e+ a+v+++a++
  MMETSP0890-20130614|29151_1   1 CNGARILYPPATQWQGYSkLVQDGAALLEPVQTEFKN-----ISWADLIVLAGGVALEISSNNsLHlDFCGGRTDDSEGSAwKYL--EPtiygNVNETADMLKEAILRTGLSNTDFVALLGArRSIGNATFP----FY------------G---------VFSSNPAVLDNTYFQNLLAsdfelitapsgslqyksvdnDIYATQTDISVKFDAELGAIVQRFATN 194
                  9************9996636679*************9.....******************6665444**************6666..56567566999999******************776267*****33....33............1.........2333899*******************************9999*********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.95
# Mc/sec: 620.53
//
Query:       MMETSP0890-20130614|29161_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-16   59.1   3.7    7.9e-16   57.3   1.3    2.6  2  PF05739.14 SNARE domain
    1.1e-09   38.3   2.4    1.1e-09   38.3   1.7    2.3  2  PF00804.20 Syntaxin
  ------ inclusion threshold ------
      0.016   13.6  10.0      0.062   11.6   5.9    1.9  2  PF13166.1  AAA domain
       0.11   12.0   2.6       0.47   10.0   0.1    2.7  3  PF14385.1  Domain of unknown function (DUF4416)
       0.23   11.2   7.1       0.75    9.5   4.9    1.8  1  PF10454.4  Protein of unknown function (DUF2458)


Domain annotation for each model (and alignments):
>> PF05739.14  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   5.2e+02      41      58 ..      90     107 ..      85     112 .. 0.70
   2 !   57.3   1.3   2.9e-19   7.9e-16       4      63 .]     212     271 ..     209     271 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.19
                  HHHHHHHHHHHHHHHHHH CS
   PF05739.14  41 vesassrverankrlkka 58 
                  v++a+ +++++++ l k+
  MMETSP0890-20130614|29161_1  90 VDKANAKIKQTKSILEKM 107
                  677777777777777666 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 2.9e-19
                  HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   PF05739.14   4 eeleelessigeLkqlfldmgeeveeQgelldrIdnnvesassrverankrlkkalryqk 63 
                  +++ +le+s++eL+q+fld + + e+Qgelld+I+++v  a+++ve++n+ +  a  yqk
  MMETSP0890-20130614|29161_1 212 QDVLKLEQSVQELHQMFLDFALLTEQQGELLDQIEYQVKAANEYVEDGNRDIEVAIVYQK 271
                  7899***********************************************999988886 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   1.7   3.9e-13   1.1e-09       3     102 ..      40     140 ..      38     141 .. 0.90
   2 ?   -0.2   0.1      0.37     1e+03      20      38 ..     218     233 ..     200     276 .. 0.51

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3.9e-13
   PF00804.20   3 seffeqveeIrgeiekisekveelkrlhsrilaspdpd..kqtkeeleeltaeikklankirskLksleqsieqeegqnrssadlrirktqhstlsrkFkev 102
                    ff+ vee+++ +e +++   ++++  ++ l++  ++  +++++el  l+ + + ++++++s L+++e ++e++  + +  ++lrir++  stl+rkF +v
  MMETSP0890-20130614|29161_1  40 AAFFKDVEEVKRGVEVVAKAAARVREITEERLLAVSSSaeEELSRELGPLVDKANAKIKQTKSILEKMEAENESKA-ETSKASELRIRQNLTSTLKRKFGDV 140
                  68**************************9999999844459******************************86444.6677789***************987 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.37
   PF00804.20  20 sekveelkrlhsrilaspd 38 
                  ++ v+   +lh+  l +  
  MMETSP0890-20130614|29161_1 218 EQSVQ---ELHQMFLDFAL 233
                  33333...33333333333 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.9   2.3e-05     0.062     308     447 ..      30     165 ..      10     182 .. 0.73
   2 ?    1.3   0.0     0.029        78     341     397 ..     217     274 ..     186     279 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.3e-05
    PF13166.1 308 esilseekensefkedveelkaelealeeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklkklekkinslekeleklekeikklekei 447
                   + ++ee+   +f++dvee+k+ +e + ++  ++++  ee+l  ++ss e    ++ + e+  lvdk+n++i++ +++ +++++e ++ ++  + +++   ++  +++++k  +++k+ ++ ++  + + +++ k + ei
  MMETSP0890-20130614|29161_1  30 SRQVDEEDYLAAFFKDVEEVKRGVEVVAKAAARVREITEERLLAVSSSAE----EELSRELGPLVDKANAKIKQTKSILEKMEAENESKAETSKASELRIRQNLTSTLKRKFGDVAKEYQKQQQYYKGEMQKTVKRQLEI 165
                  344566788999******************************99999888....55566666778888888888888777766666655555555555444444445666667777777777766666666666666655 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.029
    PF13166.1 341 lekaleeKlkdpfsslel..esiadeieeinelvdkinelirkhNekidnlkeeknkak 397
                  le+ + ++l ++f +++l  e+  + +++i+ +v+++ne +++ N+ i+     +++++
  MMETSP0890-20130614|29161_1 217 LEQSV-QELHQMFLDFALltEQQGELLDQIEYQVKAANEYVEDGNRDIEVAIVYQKEIR 274
                  33333.44556666555332666667789999999999999999988876666666655 PP

>> PF14385.1  Domain of unknown function (DUF4416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.52   1.4e+03      28      48 ..      17      38 ..      10      94 .. 0.72
   2 ?   10.0   0.1   0.00017      0.47      18      74 ..     124     176 ..     114     180 .. 0.85
   3 ?    0.6   0.0      0.13   3.6e+02      55     102 ..     222     270 ..     198     274 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.52
    PF14385.1 28 eekFGkidlesellp.feytdy 48
                 ee+FG i++++++   +++ dy
  MMETSP0890-20130614|29161_1 17 EERFGDIEMHTSSSRqVDEEDY 38
                 6788888876655430334444 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00017
    PF14385.1  18 evleevkekleekFGkidlesellpfeytdyyeeemgegllrrlvsferlidreela 74 
                  ++ +++  +l+ kFG + +e ++    + +yy+ em + ++r+l +++  i ++e+ 
  MMETSP0890-20130614|29161_1 124 RIRQNLTSTLKRKFGDVAKEYQK----QQQYYKGEMQKTVKRQLEIVKPDITNDEVD 176
                  67789999*********999875....679**************9999999988875 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.13
    PF14385.1  55 egllrrlvsferlidr.eelaeiKlatnelekelaedgkRkvnldpgyl 102
                  ++l++ ++ f+ l ++  el +  ++  +  +e+ edg+R + + + y 
  MMETSP0890-20130614|29161_1 222 QELHQMFLDFALLTEQqGELLDQIEYQVKAANEYVEDGNRDIEVAIVYQ 270
                  6777788888877765157888888888888999999999999999885 PP

>> PF10454.4  Protein of unknown function (DUF2458)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.9   0.00027      0.75      25     107 ..      62     151 ..      50     167 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00027
    PF10454.4  25 klrki..rklikeqhkhekqwekerealikkqearkekkkkldavLksvgaqvddgsknsrke..keeeaeLe.afd..ekvlkaskqls 107
                   +r+i  ++l++  ++ e+++++e   l+ k +a++++ k + ++++++++  ++ sk s+++  ++++  L+ +f   +k +++++q++
  MMETSP0890-20130614|29161_1  62 RVREIteERLLAVSSSAEEELSRELGPLVDKANAKIKQTKSILEKMEAENESKAETSKASELRirQNLTSTLKrKFGdvAKEYQKQQQYY 151
                  5566644689****************************************9999887777666113444555413431123344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2017  (0.147528); expected 273.4 (0.02)
Passed bias filter:                      875  (0.0639994); expected 273.4 (0.02)
Passed Vit filter:                       102  (0.0074605); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.90
# Mc/sec: 814.76
//
Query:       MMETSP0890-20130614|29208_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 296.50
//
Query:       MMETSP0890-20130614|29240_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-08   32.4  20.2       0.12   11.9   0.1    5.7  5  PF14145.1  YrhK-like protein
  ------ inclusion threshold ------
      0.033   13.3   0.4      0.033   13.3   0.3    2.9  3  PF00335.15 Tetraspanin family
      0.071   13.0   7.3       0.59   10.0   1.5    2.9  2  PF13160.1  Protein of unknown function (DUF3995)


Domain annotation for each model (and alignments):
>> PF14145.1  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   6.2e-05      0.28      38      57 ..     140     159 ..     125     161 .. 0.82
   2 !   11.9   0.1   2.6e-05      0.12      11      29 ..     176     194 ..     166     216 .. 0.89
   3 ?    0.9   0.0      0.07   3.2e+02      37      49 ..     329     341 ..     316     351 .. 0.62
   4 !    5.4   0.0    0.0028        13       9      26 ..     367     384 ..     358     392 .. 0.84
   5 !    8.3   4.5   0.00036       1.6      12      56 ..     408     457 ..     399     459 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.2e-05
    PF14145.1  38 lFiiGSilflirpvirlire 57 
                   F iGS+lf++++++++ ++
  MMETSP0890-20130614|29240_1 140 SFMIGSVLFVVGAAFDYAHK 159
                  47999999999999999775 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.6e-05
    PF14145.1  11 vdliggllFliGSilffyp 29 
                  +++igg++F++GS l f+ 
  MMETSP0890-20130614|29240_1 176 PYFIGGIFFMVGSYLGFFA 194
                  79*************9985 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.07
    PF14145.1  37 wlFiiGSilflir 49 
                    ++iG++ f ++
  MMETSP0890-20130614|29240_1 329 LSYLIGAVWFQLG 341
                  4455555555444 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0028
    PF14145.1   9 tvvdliggllFliGSilf 26 
                  +++  +gg++F+ GS l+
  MMETSP0890-20130614|29240_1 367 ALPATLGGVFFVLGSMLA 384
                  577889*********997 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.00036
    PF14145.1  12 dliggllFliGSilffyp.e...lytaavwl.FiiGSilflirpvirlir 56 
                  d+ig+llFl + i++f++ +      + + l ++iGS+ fl++++++l +
  MMETSP0890-20130614|29240_1 408 DFIGSLLFLEAGIFSFSDiSgiaSDSLTIKLpYLIGSFGFLVASTLELFM 457
                  9*****************7676622444444588***********99875 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   7.2e-06     0.033      11      69 ..     138     200 ..     128     234 .. 0.69
   2 ?    2.1   1.2      0.02        90      13      61 ..     330     382 ..     326     388 .. 0.81
   3 ?   -2.5   0.4      0.49   2.2e+03      25      59 ..     420     449 ..     391     453 .. 0.44

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.2e-06
   PF00335.15  11 llfllvGlallgvgvwl....kvsldllaeasnssksavilliiviGviilil.gilGcigal...k 69 
                     +++G +l++vg+ +    k s+ + a+    + s+v ++++ iG+i++ + + lG+++a+   +
  MMETSP0890-20130614|29240_1 138 ATSFMIGSVLFVVGAAFdyahKHSDRPNAV---RTSSTVQWPYF-IGGIFFMVgSYLGFFAAInlgR 200
                  567899***********5433344444444...46688999999.999999999********95551 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.02
   PF00335.15  13 fllvGlallgvgvwl..kvsldlla.easnssksavilliiviGviilil.gi 61 
                    l+G++ + +g+     +s+ +++ ++++ ++ +++ l + +G+++++l ++
  MMETSP0890-20130614|29240_1 330 SYLIGAVWFQLGILAeiLISSEYIQaVPHSIKQNILTALPATLGGVFFVLgSM 382
                  55778888888888855477777777***********************9555 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.49
   PF00335.15  25 vwlkvsldllaeasnssksavilliiviGviilil 59 
                  ++  +++d +++a  s+ +++ l+++ iG++ +++
  MMETSP0890-20130614|29240_1 420 IF--SFSDISGIA--SDSLTIKLPYL-IGSFGFLV 449
                  11..222222222..33344444444.44444444 PP

>> PF13160.1  Protein of unknown function (DUF3995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0075        34      41     106 ..     140     209 ..     123     220 .. 0.71
   2 ?   10.0   1.5   0.00013      0.59      48      93 ..     560     606 ..     553     618 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0075
    PF13160.1  41 tllvaaallla.aalvllqag..ivgpvpspglvrlglwvlaavlllRgvgdfkylgffkrake.ssrfa 106
                   ++++ +l+++ aa+  ++ +  + ++v+++++v++  ++ ++++++ + ++f  +  + r ++ + rf+
  MMETSP0890-20130614|29240_1 140 SFMIGSVLFVVgAAFDYAHKHsdRPNAVRTSSTVQWPYFIGGIFFMVGSYLGFFAAINLGRREDsEPRFV 209
                  4566666666557777777775448889999999***********9988555444444444444366665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00013
    PF13160.1  48 lllaaalvllqagi.vgpvpspglvrlglwvlaavlllRgvgdfkyl 93 
                  l+++aal l+++++ v ++++ g++ + l v++++ll+R v +f+y+
  MMETSP0890-20130614|29240_1 560 LICFAALALASVVHtVPRQRPFGMLLWSLRVVMVFLLVRYVWKFVYA 606
                  7888999999998669999999********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.96
# Mc/sec: 1562.62
//
Query:       MMETSP0890-20130614|29249_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-37  129.0   0.0      2e-37  128.4   0.0    1.3  1  PF03464.10 eRF1 domain 2
    1.3e-34  118.7   0.0    2.1e-34  118.0   0.0    1.3  1  PF03465.10 eRF1 domain 3
  ------ inclusion threshold ------
      0.058   11.9   0.0      0.074   11.5   0.0    1.1  1  PF00851.13 Helper component proteinase
      0.088   12.6   0.3       0.16   11.7   0.2    1.4  1  PF14442.1  N-terminal domain of Bd3614-like deaminases


Domain annotation for each model (and alignments):
>> PF03464.10  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   5.7e-41     2e-37      15     130 ..       2     117 ..       1     120 [. 0.96

  Alignments for each domain:
  == domain 1    score: 128.4 bits;  conditional E-value: 5.7e-41
                  EEE-SS-EEEEEEEE-G.GG-S----HHHHHH.....HHHHHHHHHHHHHHHHH....HTTT-SEEEEEE---HHHHHHHHHHHHHHHHTCCCEEEEE-SSSSGGGHHHHHHSTHHHHH CS
   PF03464.10  15 allkgsgieilekievslPkKhgrGgqsarrfe..reekreeflkkvaeaakeaFi.vdkdkvkgiilaGpGfaKeellesllldaelkkkkvivlvdvsyggeaGlnevlekpavakv 130
                  ++l+g+++e+l+k++v+lPkKhgrGgqsa rf+  r ekr+++++kvae a + Fi +dk++v g+ilaG++++K el +s ++d++l+k  vi++vdvsygge G+n+++e   +a++
  MMETSP0890-20130614|29249_1   2 GTLQGNNREVLHKFSVDLPKKHGRGGQSALRFArlRLEKRHNYVRKVAELAVQFFItNDKPNVAGLILAGSADFKSELQNSEMFDNRLLK-VVIKTVDVSYGGETGFNQAIEL--SAET 117
                  79***************************************************************************************9.9********************9..5554 PP

>> PF03465.10  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   6.2e-38   2.1e-34       1     113 []     123     261 ..     123     261 .. 0.98

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 6.2e-38
                  HHHHHHHHHHHHHHHHTTCSSEE---HHHHHHHHTT-EEEEEEEHHHHTSSSHHHHHS........................---.HHHHHH....HHHHHHHHHHTT-EEEEE-TTSTTHHHH.HHG---EEEESS-- CS
   PF03465.10   1 liqekklleefleelakdtgkavYGveevlkalemgAvetLLvseelersrdtlkekv.......................ketgeelelve...lieelvenveesgakveiisseseeGeqlvkafgGiaaiLRykv 113
                  l+qek+ll+++++e+++dtgk+++ v ++lk le+gA+etL+v+e+l+++r tl+++                        +++g e e+v+   ++e+l++n++++g+++e+++++s+eG q++++fgGi++iLR++v
  MMETSP0890-20130614|29249_1 123 LVQEKRLLQRYFDEISQDTGKYCFMVSDTLKGLELGAIETLIVWENLDMDRITLRDSSgntpdkiihlnkeqqandsyfkdEKSGIEYEIVDtisFVEWLANNYKSFGTSLEFVTNRSQEGSQFCRGFGGIGGILRWRV 261
                  589************************************************99999999*********************9999******99999******************************************97 PP

>> PF00851.13  Helper component proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05     0.074     210     266 ..     125     181 ..     108     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF00851.13 210 hakrffsnyfekidpsegyskyviRknpngtRklaignLivstdleklreqlkgesi 266
                  + kr+++ yf++i ++ g   +++  + +g    ai  Liv  +l+  r  l+++s 
  MMETSP0890-20130614|29249_1 125 QEKRLLQRYFDEISQDTGKYCFMVSDTLKGLELGAIETLIVWENLDMDRITLRDSSG 181
                  679*******************************************99999988765 PP

>> PF14442.1  N-terminal domain of Bd3614-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.8e-05      0.16      86     116 ..     258     287 ..     235     291 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.8e-05
    PF14442.1  86 Akrvtaldlradddgaaasarasdddddddd 116
                    rv  ++l+a++++a   a ++dddd+ddd
  MMETSP0890-20130614|29249_1 258 RWRVDFMELEANEEAAEF-ADDDDDDDEDDD 287
                  457777888888887776.455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 1276.60
//
Query:       MMETSP0890-20130614|29257_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-18   65.6   0.1    2.7e-18   65.3   0.0    1.1  1  PF00383.17 Cytidine and deoxycytidylate deaminase zinc-binding region
    0.00013   21.5   0.0    0.00014   21.4   0.0    1.1  1  PF08210.6  APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> PF00383.17  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   3.9e-22   2.7e-18       8     101 ..       1      96 [.       1      97 [. 0.96

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 3.9e-22
                  HHHHHHHHTT-BTTTSB----EEEET.TSSBEE----BCCSSCCCTB-HHHHHHHHHHHH.-CCCETTEEEEEEE---CCHHHHHHHHS-TEEEEE CS
   PF00383.17   8 leialeaakeaykcsnfkvGavivkk.ngeiistgyngepaggsktiHAEvnAilsaakn.ggsklegatlyvtlePCgmCakaiiesgikkvvig 101
                  +++ale+a+ea + +++++Gav+v++ ++eii++g n  ++  +  +HAE++ +++ a++ g+++l + tl++t+ePC+mC  a   ++++++v+g
  MMETSP0890-20130614|29257_1   1 MRLALEEAREAGARKEVPIGAVLVDEeKQEIIASGRNSVEELLDASAHAEIMCLRAGANQiGNWRLLNLTLFCTVEPCPMCLSAAYAFRVRRLVYG 96 
                  899**********************978899**************************99978********************************97 PP

>> PF08210.6  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     2e-08   0.00014      22     106 ..      16      96 ..       5     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2e-08
                  -EEEEEEEEEEEE---EEEE-EEEECC....ESS-HHHHHHHHTS---..-TTSEEEEEEE-SS---HH....HHHHHHHHHHH-...T CS
    PF08210.6  22 rvsvvallkleakesssvlrglarnenk...kssHaEelflrdieslldaepgsaytitlylslSPChdsddeCaeklaellekelk.k 106
                  +v  +a+l++e+k+  +++ + + + ++   +s HaE + lr+  +++   + +  ++tl+++  PC      C ++ +++  ++l  +
  MMETSP0890-20130614|29257_1  16 EVPIGAVLVDEEKQ--EIIASGRNSVEElldASAHAEIMCLRAGANQI--GNWRLLNLTLFCTVEPCPM----CLSAAYAFRVRRLVyG 96 
                  45556777777755..555555555545699*****************..7******************....*999888877776564 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 546.67
//
Query:       MMETSP0890-20130614|29266_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-20   72.8   0.1    7.6e-19   67.5   0.0    2.9  2  PF08683.6 Microtubule-binding calmodulin-regulated spectrin-associated


Domain annotation for each model (and alignments):
>> PF08683.6  Microtubule-binding calmodulin-regulated spectrin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.044   6.1e+02      72      99 ..     106     133 ..     102     152 .. 0.80
   2 !   67.5   0.0   5.6e-23   7.6e-19       9     121 ..     185     310 ..     181     315 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.044
    PF08683.6  72 teelvkisgqgpkeitkamveklykyds 99 
                  +ee   + g++ ++++k+ ++k+++++ 
  MMETSP0890-20130614|29266_1 106 QEEEEEVNGNDKDTVNKDGLDKMQRFQM 133
                  5666778899999999999999998864 PP

  == domain 2    score: 67.5 bits;  conditional E-value: 5.6e-23
    PF08683.6   9 pskksNksiisnaiehvcLaGkvnekerkaileelekseaehfliLfr.derkqyralYsld............eeteelvkisgqgpkeitkamveklykydsgskqFkeikskklsetvdaltl 121
                  + k sNk +i+na+++vcLaG++  ++   +l  le s a+  ++L++ d+   +r+l+ ++            +   ++ ki+g gp++  ++ ++++yky+s s++F++ ++k+++ t+da+ l
  MMETSP0890-20130614|29266_1 185 TRKLSNKRTIHNALSQVCLAGAHCAAALDDALSALEASPADNHILLLKdDAVHVFRGLFAVHrggtattasagaNAAVQVEKIYGRGPSRFGEEHIQSFYKYNSASRSFQKLPAKSFTFTTDAIVL 310
                  6789**********************************9777777777588999*****885222222211111123367899*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.70
# Mc/sec: 1136.56
//
Query:       MMETSP0890-20130614|29264_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   13.3   0.0       0.73   10.3   0.0    2.3  2  PF12681.2 Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.079   1.1e+03      39      81 ..     115     159 ..      67     181 .. 0.55
   2 ?   10.3   0.0   5.4e-05      0.73       2      39 ..     238     296 ..     237     375 .. 0.57

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.079
    PF12681.2  39 sgvrellglde.peapggggvhlafev.edldalvarlkaaGakv 81 
                  +++++ +++ +  +a+g +g++l +   ++ld+++++  +  + +
  MMETSP0890-20130614|29264_1 115 DAINDWTDYSTsKNAQGYAGFALGLWSsTSLDSYIQAFASGSVAY 159
                  444444444431333344444444433577777777766554544 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.4e-05
    PF12681.2   2 pvsdleaaraFYeklLGfevaeeegdfvtlslglalg.....................s 39 
                  +v+dl+  r +Y++++G +++ +  d++   l ++l                      s
  MMETSP0890-20130614|29264_1 238 TVDDLDTVRTYYKNVFGISPTSYTNDQGNSVLDFTLSstatviiryiqvqgqtgtkttS 296
                  599*******************6666655555566653332444444444443333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 1233.25
//
Query:       MMETSP0890-20130614|29287_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-46  156.6   0.1    4.7e-46  156.2   0.1    1.2  1  PF01634.13 ATP phosphoribosyltransferase
    3.6e-23   81.1   0.1    6.9e-23   80.2   0.0    1.4  1  PF08029.6  HisG, C-terminal domain
  ------ inclusion threshold ------
      0.069   12.1   0.0       0.18   10.7   0.0    1.6  1  PF03466.15 LysR substrate binding domain
       0.07   12.5   0.1       0.57    9.6   0.0    2.2  1  PF09084.6  NMT1/THI5 like


Domain annotation for each model (and alignments):
>> PF01634.13  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.1   1.4e-49   4.7e-46       2     161 ..      61     217 ..      60     219 .. 0.95

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 1.4e-49
                  -TTHHHHHHH-----B--B--HHHHHSS.---SCEEEEEECCSEEEEEEEECTCSC----TCGCT-EEEEES-HHHHHHHHHHTT....--EEEEE----TTHCCC----SEEEEEE----CCCCTTEEEEEEEEEEEEEEEEEHHHHHHCHHHHHHHHHHHHH CS
   PF01634.13   2 rakdipvfveeGkldlGitGeDlvreeelgnkdveelldLdfgeckLvvavpeeeeyesledlaeelriatkypnlakkylkkkg....ikveiiklsGsvEvapalGiAdaIvDlvstGeTLkangLkeietilessavLiaskesleekeklieelvtrleg 161
                  +a+di+++v+eG++d+GitGeD+v+e++    dve l++L++g+c+L++++p    y+++++la ++riat++p l+k+y++k +     +++i  +sGsvE+a+ lG+Ad +vDlv+tG+T++a+gL+e+++i+++++vLia+++s  ++++l+e++ +r+ g
  MMETSP0890-20130614|29287_1  61 PAADIAKYVGEGEVDIGITGEDIVSESD---VDVEVLMKLNIGKCRLSLQAPIGV-YTEPKQLA-GKRIATSFPVLTKSYFEKIDpdlgPMTRIKIISGSVEAACGLGLADGVVDLVETGTTMRAAGLEEVAIIMNTQTVLIANPHS--RNHDLVETIRKRIAG 217
                  799***********************98...69*****************99865.69******.9*****************9989989999*****************************************************9..677789***999987 PP

>> PF08029.6  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0     2e-26   6.9e-23       1      71 [.     220     290 ..     220     293 .. 0.97

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 2e-26
                  CC---EEEEEEE-GGGHHHHHHH-------EEEE-S----EEEEEEE-CCCHHHHHHHHHC---EEEEEEE CS
    PF08029.6   1 aAqgkvlvmynaprekleevlallPGleaPTispLsdeewvavsavvpekevaevmdeLkalGAsgIlvlp 71 
                  +A+ +v+v+yn++  +le+v++++PG ++P ispL++++w+av+a v++k+   +md+L+a+GA++Il ++
  MMETSP0890-20130614|29287_1 220 TADAYVMVTYNVHLANLEKVKNITPGKNSPSISPLERPDWLAVQALVHKKDAPLIMDQLEAAGAQDILLTA 290
                  6999****************************************************************986 PP

>> PF03466.15  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.3e-05      0.18      31      77 ..      49      96 ..      47     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.3e-05
                 HSTTSEEEEEEE-CHHHHHHHH----SEEEEECSG.S-TTEEEEEEEE CS
   PF03466.15 31 ryPdvelelvegdseelldllaegelDlairrgpp.edpglearpLae 77
                 r  ++ l++v  + +++++ + ege+D++i+++++ +++++++++L++
  MMETSP0890-20130614|29287_1 49 RCSNLPLSIVFLPAADIAKYVGEGEVDIGITGEDIvSESDVDVEVLMK 96
                 56678899999999**************************99999975 PP

>> PF09084.6  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00017      0.57      31     102 ..      62     129 ..      51     221 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
    PF09084.6  31 psdavelvaagkadfgvsyqeslllarakglpvvavaallqeplnglivlkdsg.ikspkDLkGkrigysgse 102
                   +d  ++v++g++d+g++  + +    +++++v  +++l+  +   l  ++  g  ++pk L+Gkri++s  +
  MMETSP0890-20130614|29287_1  62 AADIAKYVGEGEVDIGITGEDIVS---ESDVDVEVLMKLNIGKC-RLSLQAPIGvYTEPKQLAGKRIATSF-P 129
                  47899*************999887...99999999999995555.455555555499***********987.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:01.09
# Mc/sec: 655.15
//
Query:       MMETSP0890-20130614|29293_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-12   45.8   0.4    1.1e-11   44.7   0.3    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    1.1e-07   31.1   4.3      1e-05   24.9   0.0    3.3  3  PF00023.25 Ankyrin repeat
    1.3e-06   27.9   0.7     0.0011   18.8   0.0    2.6  2  PF13606.1  Ankyrin repeat
    1.6e-06   28.0   1.9    9.7e-05   22.3   0.0    2.4  2  PF13857.1  Ankyrin repeats (many copies)
     0.0012   19.1   0.1      0.003   17.9   0.0    1.7  1  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.3     4e-15   1.1e-11      15      87 ..     122     192 ..     111     193 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 4e-15
    PF12796.2  15 lLlekgadvdlgetpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnl 87 
                   L++kga +d   + L+lAa++g+ + + l +  ga++n+k+   g tpL +A++ +++e+v  Ll++ga++nl
  MMETSP0890-20130614|29293_1 122 CLHKKGAQLD---NILSLAAQNGHNALLALTIRLGASPNTKTqPLGATPLTWAIQRNDKEAVIALLNAGANPNL 192
                  6889999999...9**********************************************************96 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.2    0.0038        11       6      32 ..     134     160 ..     122     161 .. 0.92
   2 !   24.9   0.0   3.8e-09     1e-05       2      30 ..     164     192 ..     163     195 .. 0.95
   3 ?   -0.1   0.0      0.31   8.6e+02       7      22 ..     201     216 ..     201     217 .] 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0038
                  HHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   6 LHlAalrgnlevvklLlsqGAdlnaqd 32 
                  L lAa++g+   + l +  GA++n ++
  MMETSP0890-20130614|29293_1 134 LSLAAQNGHNALLALTIRLGASPNTKT 160
                  889*********************876 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3.8e-09
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlna 30 
                  G TPL +A++r+++e v  Ll++GA++n+
  MMETSP0890-20130614|29293_1 164 GATPLTWAIQRNDKEAVIALLNAGANPNL 192
                  88**************************7 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.31
                  HHHHHTTHHHHHHHHH CS
   PF00023.25   7 HlAalrgnlevvklLl 22 
                  Hl+a+   +++++lL+
  MMETSP0890-20130614|29293_1 201 HLYAQLYAPDCLTLLI 216
                  999999999*****98 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0025       6.9       4      30 .]     132     158 ..     129     158 .. 0.90
   2 !   18.8   0.0     4e-07    0.0011       2      29 ..     164     191 ..     163     192 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0025
    PF13606.1   4 TpLhlAasngrielveaLlengadina 30 
                  ++L lAa+ng+ +l+ + ++ ga +n+
  MMETSP0890-20130614|29293_1 132 NILSLAAQNGHNALLALTIRLGASPNT 158
                  7899******************99985 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 4e-07
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  G TpL +A++++ +e+v aLl++ga++n
  MMETSP0890-20130614|29293_1 164 GATPLTWAIQRNDKEAVIALLNAGANPN 191
                  66************************99 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.2    0.0081        22       2      46 ..     124     160 ..     114     161 .. 0.79
   2 !   22.3   0.0   3.5e-08   9.7e-05      14      52 ..     162     200 ..     158     204 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0081
    PF13857.1   2 lehgpadvnatdeggn...tpLhlAakggalevvrlLlapgadlnlrd 46 
                  +++g               + L lAa +g+  ++ l ++ ga++n+++
  MMETSP0890-20130614|29293_1 124 HKKG-----------AqldNILSLAAQNGHNALLALTIRLGASPNTKT 160
                  4444...........33339*************999999999999875 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3.5e-08
    PF13857.1  14 eggntpLhlAakggalevvrlLlapgadlnlrdsdglta 52 
                  + g tpL +A+ +++ e+v+ Ll++ga++nl   +g  +
  MMETSP0890-20130614|29293_1 162 PLGATPLTWAIQRNDKEAVIALLNAGANPNLPGYRGYLP 200
                  5688***************************99999665 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06     0.003       5      54 .]     134     184 ..     131     197 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.1e-06
    PF13637.1   5 LhyaaisgrlelvklLlekgidinrt..desGntaLhiAalrgnieilklLl 54 
                  L  aa+ g+  l++l +  g+++n +  +  G t+L  A++r+++e++  Ll
  MMETSP0890-20130614|29293_1 134 LSLAAQNGHNALLALTIRLGASPNTKtqPL-GATPLTWAIQRNDKEAVIALL 184
                  6779999**********99*******9665.******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.52
# Mc/sec: 1000.02
//
Query:       MMETSP0890-20130614|29294_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.90
# Mc/sec: 612.40
//
Query:       MMETSP0890-20130614|29291_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-20   70.9   4.9    9.2e-20   70.9   3.4    1.9  2  PF05071.11 NADH ubiquinone oxidoreductase subunit NDUFA12


Domain annotation for each model (and alignments):
>> PF05071.11  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   3.4   6.7e-24   9.2e-20       1      66 [.      18      82 ..      18     115 .. 0.86
   2 ?   -0.2   0.1     0.091   1.2e+03      90      90 ..     132     132 ..      91     160 .. 0.55

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 6.7e-24
   PF05071.11  1 gelvGeDefGNkYYenkkeelkkrrRwviykgkaevdaskvppeWhgWLhhtvdeppteeelkkke 66
                 g+lvGeDe GNkYYe+  +e ++++Rwv+yk+  ++d+s+vpp WhgWL h+ dep +e+el  ++
  MMETSP0890-20130614|29291_1 18 GRLVGEDELGNKYYEDL-NEYYGQHRWVEYKDIWNYDGSMVPPAWHGWLTHQHDEPGHESELYLQK 82
                 789**************.9999**********************************9966544333 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.091
   PF05071.11  90 l 90 
                   
  MMETSP0890-20130614|29291_1 132 D 132
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.81
# Mc/sec: 541.40
//
Query:       MMETSP0890-20130614|29301_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      569  (0.0416179); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.78
# Mc/sec: 144.40
//
Query:       MMETSP0890-20130614|29308_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-06   26.2   0.2    9.1e-06   24.9   0.1    1.8  2  PF02037.22 SAP domain
    3.4e-05   23.3   1.8     0.0006   19.4   0.6    2.3  2  PF07498.7  Rho termination factor, N-terminal domain
     0.0023   17.3   0.0     0.0043   16.4   0.0    1.5  1  PF12949.2  HeH/LEM domain
     0.0033   16.8   3.4     0.0033   16.8   2.3    2.2  2  PF13076.1  Protein of unknown function (DUF3940)
  ------ inclusion threshold ------
        0.1   12.0   0.5       0.12   11.8   0.3    1.1  1  PF01628.16 HrcA protein C terminal domain
       0.19   11.6   3.3       0.23   11.3   2.3    1.2  1  PF13294.1  Domain of unknown function (DUF4075)
        0.2   11.0   4.3       0.21   11.0   3.0    1.0  1  PF01025.14 GrpE


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.67   1.3e+03       9      15 ..      12      18 ..      10      18 .. 0.71
   2 !   24.9   0.1   4.7e-09   9.1e-06       3      30 ..      18      47 ..      16      52 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.67
                 HHHHHHH CS
   PF02037.22  9 LKaeLkk 15
                 LK+ L++
  MMETSP0890-20130614|29308_1 12 LKEQLRE 18
                 7888775 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 4.7e-09
                 T--HHHHHHHHHHTT------..HHHHHHH CS
   PF02037.22  3 kltVaeLKaeLkkrGLptsGk..KaeLieR 30
                  +t +eL++eL+ ++ +tsG   K eLie 
  MMETSP0890-20130614|29308_1 18 EWTMSELREELEDMNVDTSGMkkKSELIEA 47
                 69*******************99*****96 PP

>> PF07498.7  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.6   3.1e-07    0.0006       1      41 [.      15      55 ..      15      57 .. 0.86
   2 ?    3.2   0.0     0.034        66       8      24 ..      57      73 ..      53      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.1e-07
    PF07498.7  1 eLkektleeLreiAkelgienysrl.rKqeLIfaILkaqaek 41
                 +L e t++eLre  +++++  +s++ +K+eLI+a L+aq ++
  MMETSP0890-20130614|29308_1 15 QLREWTMSELREELEDMNV-DTSGMkKKSELIEAFLQAQEKE 55
                 68999**************.566661679**********987 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.034
    PF07498.7  8 eeLreiAkelgienysr 24
                  e  ++Ak+l i+ +s+
  MMETSP0890-20130614|29308_1 57 DEIIKYAKDLSIRDISQ 73
                 58899*******99986 PP

>> PF12949.2  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0043       5      34 ..      20      49 ..      16      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-06
    PF12949.2  5 tVaqLRriLvehgIeyPsnAKKaeLveLfn 34
                 t+++LR+ L   +++     KK+eL+e f 
  MMETSP0890-20130614|29308_1 20 TMSELREELEDMNVDTSGMKKKSELIEAFL 49
                 99*************************995 PP

>> PF13076.1  Protein of unknown function (DUF3940)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.3   1.7e-06    0.0033      20      37 ..      13      30 ..      10      31 .. 0.89
   2 ?   -0.1   0.0      0.31     6e+02       1      10 [.      39      48 ..      39      51 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.7e-06
    PF13076.1 20 drqLyEltleELekeYer 37
                 + qL E+t++EL++e+e 
  MMETSP0890-20130614|29308_1 13 KEQLREWTMSELREELED 30
                 579*************96 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.31
    PF13076.1  1 mkKqfLIekL 10
                 +kK +LIe  
  MMETSP0890-20130614|29308_1 39 KKKSELIEAF 48
                 5899999865 PP

>> PF01628.16  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3     6e-05      0.12      77     129 ..      10      57 ..       6      67 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6e-05
   PF01628.16  77 nflneqlrgktlselreklraelkeeleeyaellrellellaaalsteeaeee 129
                  + l+eqlr++t+selre+l++ ++ + + +++   el+e++ +a ++e+   +
  MMETSP0890-20130614|29308_1  10 ETLKEQLREWTMSELREELED-MNVDTSGMKKKS-ELIEAFLQAQEKEQ---D 57 
                  6799***************99.887777755554.48888888843222...3 PP

>> PF13294.1  Domain of unknown function (DUF4075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.3   0.00012      0.23      17      73 ..       8      64 ..       2      70 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00012
    PF13294.1 17 kpetieiqavspkvdelkaeeepvvaedGGmkearelfmkdsnaeekkteayielkq 73
                   et++ q     + el+ e e++  +  Gmk+  el+    +a+ek  +  i+  +
  MMETSP0890-20130614|29308_1  8 EAETLKEQLREWTMSELREELEDMNVDTSGMKKKSELIEAFLQAQEKEQDEIIKYAK 64
                 57899999999999************************9999999999888776655 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.0   0.00011      0.21      10      68 ..       5      71 ..       1      75 [] 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   PF01025.14 10 eedeeeeleee.....leeleeevkel...kdkllrllaefenlrkrtekekeeakkyaiekflkel 68
                 ee e+e+l+e+     + el+ee++++   ++ ++++ + +e + +  eke++e+ kya++  ++++
  MMETSP0890-20130614|29308_1  5 EECEAETLKEQlrewtMSELREELEDMnvdTSGMKKKSELIEAFLQAQEKEQDEIIKYAKDLSIRDI 71
                 4445555555522222666********776666778888899*****************99887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1343  (0.09823); expected 273.4 (0.02)
Passed bias filter:                      930  (0.0680222); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.48s 00:00:00.87 Elapsed: 00:00:00.88
# Mc/sec: 204.23
//
Query:       MMETSP0890-20130614|29312_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.5   0.0     0.0024   17.7   0.0    1.4  1  PF00462.19 Glutaredoxin


Domain annotation for each model (and alignments):
>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.7e-07    0.0024      12      59 ..      40      91 ..      38     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHTTHH.EEEEETTTCH....HHHHHHHHHHSSBSSSEEEETTEE CS
   PF00462.19 12 CkkakrlLdelgvk.yeeidvdedp....eireelkelsgwrtvPqvfidgeh 59
                 C ++k+ L++ +v  ++ei +d+ +    +++ +lk+++g ++ P++ ++g++
  MMETSP0890-20130614|29312_1 40 CENIKAQLKTAKVGnFKEIRLDQQDldtnALKSALKRRVG-TQPPTLIVGGTV 91
                 ************888*********9778888888888889.*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 521.79
//
Query:       MMETSP0890-20130614|29323_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00095   18.7   0.4     0.0014   18.2   0.3    1.3  1  PF07617.6 Protein of unknown function (DUF1579)


Domain annotation for each model (and alignments):
>> PF07617.6  Protein of unknown function (DUF1579)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   9.9e-08    0.0014       3      94 ..       4     103 ..       2     134 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.9e-08
    PF07617.6   3 epqkeHewLqklvGeWtaeaeasmgpdqppe..kakgkeevrslgglwliaegeGemp........eggpaetimtlgYdpakkkyvgtwigsmmthlwvye 94 
                  +p+  H+ +   v + +++ + +mgp +p +    ++ e++r+ +++  + e +G           +  +++  + lg d+++k+ v +w+g mm+ +   +
  MMETSP0890-20130614|29323_1   4 RPNGSHRHIRSGVASMEMKRKGKMGPRMPGTgpSQSMLEQQRMYQQMMKEREESGVPTfelfvrgpNSPSWYPAGALGGDENSKELVESWMGGMMSDMA--K 103
                  577788888888888888889999988876511234678999999999999999976567777766788999************************995..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:00.68
# Mc/sec: 648.43
//
Query:       MMETSP0890-20130614|29338_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    7.9   6.0         10    5.8   0.3    3.1  3  PF08700.6 Vps51/Vps67


Domain annotation for each model (and alignments):
>> PF08700.6  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.014     2e+02      49      64 ..      73      88 ..      72     110 .. 0.75
   2 ?    1.9   0.2     0.013   1.7e+02      16      37 ..     109     130 ..     101     133 .. 0.82
   3 ?    5.8   0.3   0.00077        10      52      83 ..     176     207 ..     175     210 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.014
    PF08700.6 49 nYskLisasdtIrkmk 64
                 +Y++Lis++    +++
  MMETSP0890-20130614|29338_1 73 SYNDLISTTRGATTIR 88
                 6******986544444 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.013
    PF08700.6  16 lakstlkellkveaklrseira 37 
                   ++s+lk l k++  l++e ++
  MMETSP0890-20130614|29338_1 109 SSSSSLKALAKLQDALLQEETQ 130
                  46889*************9986 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00077
    PF08700.6  52 kLisasdtIrkmksemekldpklselkqaiek 83 
                  kLi+a + ++++ks+ ++l   l +++q +++
  MMETSP0890-20130614|29338_1 176 KLIAAKKRVQDLKSKRDSLLLLLRQQQQTVSE 207
                  8*************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 670.98
//
Query:       MMETSP0890-20130614|29351_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1012  (0.0740199); expected 273.4 (0.02)
Passed bias filter:                      643  (0.0470304); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.86
# Mc/sec: 543.36
//
Query:       MMETSP0890-20130614|29358_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-15   55.4   1.4    4.8e-15   54.9   1.0    1.2  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.023   14.3   0.6      0.063   12.9   0.4    1.8  1  PF13510.1  2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   1.0     7e-19   4.8e-15       3      78 .]      45     126 ..      43     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 7e-19
                  ESS-EEEEEEEETTCBHHHHHHHT-TTTGTTSS----.SSTTEEEEEEHCE.HCC.TTHHHHHHHTTSSE.....EECCCSBGG CS
   PF00111.22   3 idgkevevevadgettlldaaeenggidipysCgggg.CgtClvevnegev.qsd.etelegeeldegkl.....rlaCqtivt 78 
                   +gke++v ++ g+t +ldaa  n +idi+++Cgg   C+tC+v + + +  + + +te e ++ld ++      rl+Cq++vt
  MMETSP0890-20130614|29358_1  45 SHGKETSVRAVVGKT-VLDAALAN-DIDIEAACGGEMaCSTCHVILQQDNFdHLEkPTEEEQDMLDLAWGltdtsRLCCQIKVT 126
                  689************.******99.*********9889******76655558555699999999988888************97 PP

>> PF13510.1  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   9.2e-06     0.063      11      38 ..      50      77 ..      46     100 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.2e-06
    PF13510.1 11 kevtvpeGdtvasallangvdvprscky 38
                 ++v++  G+tv++a+lan++d+ + c  
  MMETSP0890-20130614|29358_1 50 TSVRAVVGKTVLDAALANDIDIEAACGG 77
                 5688999***************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 531.69
//
Query:       MMETSP0890-20130614|29359_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 511.81
//
Query:       MMETSP0890-20130614|29367_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-10   38.9   0.0    5.4e-10   38.7   0.0    1.0  1  PF00326.16 Prolyl oligopeptidase family
     0.0016   16.8   0.0     0.0018   16.6   0.0    1.1  1  PF05448.7  Acetyl xylan esterase (AXE1)
     0.0088   15.8   0.0     0.0099   15.6   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.034   13.7   0.0    1.1  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.6e-13   5.4e-10     104     210 ..      23     126 ..      19     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.6e-13
                  GGGS-...---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---------HHHHHHHHHHHHHHHHHH CS
   PF00326.16 104 ymsdtsl.lteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegHgigkprakveelarllaFllkal 210
                  +m+d++  +  + +m+  +  e  +  +++sp+++a+   + +p+l+  G+ D r+pp+++l++++aL +a  +  ll++p+ +H i +p + ++   +++ +l+k+l
  MMETSP0890-20130614|29367_1  23 WMTDPDFtFSSSLTMNALDD-EALATLRRCSPITKAHT--VSVPTLIALGLRDRRCPPSQGLEYFRALPEATPK-ILLTYPEDDHAIDRPWSTADHWIQIVMWLEKYL 126
                  56777777888778887775.7888899**********..9***************************996655.5789**************966677888999887 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.4e-07    0.0018     242     304 ..      41     105 ..      30     122 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.4e-07
                  HHHHHHHHHTT-HHHHGGG--S-EEEEE----SSS-HHHHHHHHHH-..-SSEEEEE-TT----- CS
    PF05448.7 242 eeevletLsYiDvknlAkrikapvllavgLeDkvcpPstvfaaynkl..eteKelkvyeeyahea 304
                  ++e+l+tL     +  A+ +++p+l+a gL+D+ cpPs     + +l  +t K l  y+e +h  
  MMETSP0890-20130614|29367_1  41 DDEALATLRRCSPITKAHTVSVPTLIALGLRDRRCPPSQGLEYFRALpeATPKILLTYPEDDHAI 105
                  5678888888888899***********************99999998434558888999988865 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06    0.0099     151     210 ..      41      95 ..       4     120 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
                  --GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE- CS
    PF12697.2 151 daaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvl 210
                  d +ala+l      + ++ + ++ ++vP+l+  g +Dr +pp++  ++ +alp a+ ++l
  MMETSP0890-20130614|29367_1  41 DDEALATLR-----RCSPITKAHTVSVPTLIALGLRDRRCPPSQGLEYFRALPEATPKIL 95 
                  334444332.....23334788899****************9999888999**9986543 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     1e-05     0.034      96     141 ..      56     103 ..      26     104 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1e-05
    PF12695.2  96 dlakltlpvllihGtrDgvvppeeaeklakalp..gdaelvviegasH 141
                  +  ++++p+l+  G rD+ +pp++  + ++alp  +++ l++ +  +H
  MMETSP0890-20130614|29367_1  56 KAHTVSVPTLIALGLRDRRCPPSQGLEYFRALPeaTPKILLTYPEDDH 103
                  3456778**************************777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.84
# Mc/sec: 379.42
//
Query:       MMETSP0890-20130614|29371_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 569.70
//
Query:       MMETSP0890-20130614|29363_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-17   61.2   0.0    1.2e-16   60.6   0.0    1.2  1  PF13489.1  Methyltransferase domain
    2.8e-13   50.0   0.0    5.2e-13   49.1   0.0    1.5  1  PF08242.7  Methyltransferase domain
    8.2e-13   48.0   0.1    5.7e-12   45.3   0.1    2.0  1  PF13847.1  Methyltransferase domain
    9.1e-12   45.4   0.0    1.6e-11   44.6   0.0    1.4  1  PF12847.2  Methyltransferase domain
      9e-10   38.8   0.5    1.1e-08   35.3   0.3    2.2  1  PF08241.7  Methyltransferase domain
    2.4e-08   34.1   0.1    5.2e-08   33.0   0.1    1.6  1  PF13649.1  Methyltransferase domain
    3.1e-05   23.8   0.0    5.7e-05   23.0   0.0    1.4  1  PF13659.1  Methyltransferase domain
    6.4e-05   22.2   0.0    0.00024   20.3   0.0    1.8  2  PF01739.13 CheR methyltransferase, SAM binding domain
    0.00013   21.3   0.1    0.00024   20.4   0.0    1.6  1  PF05175.9  Methyltransferase small domain
     0.0031   17.3   0.0     0.0069   16.2   0.0    1.6  1  PF06859.7  Bicoid-interacting protein 3 (Bin3)
  ------ inclusion threshold ------
      0.027   13.3   0.0      0.061   12.1   0.0    1.6  2  PF01234.12 NNMT/PNMT/TEMT family
      0.032   13.7   0.1          1    8.7   0.0    2.1  2  PF05148.10 Hypothetical methyltransferase
       0.13   12.0   0.0        0.3   10.8   0.0    1.6  1  PF02675.10 S-adenosylmethionine decarboxylase


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.2e-19   1.2e-16       5     161 ..      92     282 ..      89     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 1.2e-19
    PF13489.1   5 rereladllerllarlkpggrvLDiGcGtGillellaen.gf.dvtgvDpspaaigk.........................akqaqksqfdeed........aaepagkfdlivarevlehvp..dpeellrqiaellkpgGylllstpnas..lasdeafakwdylvprgthisffsaeslkelleeaGfeive 161
                   +r l + l++ll     + +v +iG+G+G+ + ++a + g   +t +D s  + +k                         a+ +   +f++++        +++  + fdl+v+++v+ h++     + l++i++llkpgG++++st+n    + +d+   + +  v   +   f++++++++l +++G+++v 
  MMETSP0890-20130614|29363_1  92 TQRVLDEWLKPLL--SIDNVQVAEIGSGGGRIALYMANQdGInTLTLFDVSAKMLNKaktqlaqikgaefvqrcrfihidgdADGSTGNPFFAPAsstnnkayPECTRAAFDLVVCFDVMVHMDlhTMFRCLKRIFSLLKPGGHAFISTSNLLtpDGWDRFRRQRRSTV---GGFIFVTPDAVRHLIKRVGLTLVR 282
                  5778888888888..578889***************6665995599******************999999999999999999677777777666633333333445555**************954456899*****************98522133333333333333...777899***************985 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   4.9e-16   5.2e-13       2      98 ..     113     233 ..     112     234 .. 0.92

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 4.9e-16
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakren.nnnnnvnlealdlldldgg......................ssfDvvvasnvlhhl..kdirevldnirklLkpgGv 98 
                  eiG+G G+++ +++++    ++t  D+s++++++ak +la++++ + ++++++ ++d +d dg                       ++fD+vv+++v+ h+   ++ + l++i +lLkpgG+
  MMETSP0890-20130614|29363_1 113 EIGSGGGRIALYMANQDGINTLTLFDVSAKMLNKAKTQLAQIKGaEFVQRCRFIHID-GDADGStgnpffapasstnnkaypectrAAFDLVVCFDVMVHMdlHTMFRCLKRIFSLLKPGGH 233
                  9***************8788888******************9871556788888888.7777778*************************************99*****************7 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   5.4e-15   5.7e-12       3     112 ..     107     240 ..     105     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 5.4e-15
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke.raqklgfe...nveFiq..............gdieelekl.le....esfDlvisnevl..naladpqkvlkeiervlkpggrlivesps 112
                  ++++v ++G+G G+++l +a++     +++++D s++++++Ak+ +aq +g e   +++Fi+              + + + +++ ++    + fDlv++++v+  ++l ++  +lk+i+++lkpgg+ ++++ +
  MMETSP0890-20130614|29363_1 107 DNVQVAEIGSGGGRIALYMANQD-GINTLTLFDVSAKMLNKAKTqLAQIKGAEfvqRCRFIHidgdadgstgnpffAPASSTNNKaYPectrAAFDLVVCFDVMvhMDLHTMFRCLKRIFSLLKPGGHAFISTSN 240
                  6899****************543.3355***************9677778877778999999**99999999888877777777777799999*************************************99988 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.5e-14   1.6e-11       4     111 ..     110     238 ..     107     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 1.5e-14
    PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarena...ksldleeriellqgdakeelsller....................fDavllkg.ltldallal..deprrvlealpkllkpggrlvies 111
                   + ++G+G G+++l++a++++  +++ +D s+++l+ a+  +   k +   +r+++++ d + + s +++                    fD+v++ + +     +++   +  r+l+++ +llkpgg+ +i++
  MMETSP0890-20130614|29363_1 110 QVAEIGSGGGRIALYMANQDGINTLTLFDVSAKMLNKAKTQLaqiKGAEFVQRCRFIHIDGDADGSTGNPffapasstnnkaypectraaFDLVVCFDvM-----VHMdlHTMFRCLKRIFSLLKPGGHAFIST 238
                  689***************766666***************8885555566679999999555445555555777788888899999***********9944.....33333444566*************99976 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.3     1e-11   1.1e-08       2      95 .]     113     236 ..     112     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1e-11
    PF08241.7   2 dvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle.......................lvvadaeel....pfednsfDvvvssevlehl..edpekalkeiaRvLkpgGllvi 95 
                  ++G+G+g+++ ++a++   +++t +D+s++ml++ak++l++ +                         +  a+ ++         + fD+vv++ v+ h+  +   ++lk i  +LkpgG+ +i
  MMETSP0890-20130614|29363_1 113 EIGSGGGRIALYMANQdGINTLTLFDVSAKMLNKAKTQLAQIKGAefvqrcrfihidgdadgstgnpfFAPASSTNNkaypECTRAAFDLVVCFDVMVHMdlHTMFRCLKRIFSLLKPGGHAFI 236
                  79**************99999***************9999987778******9988888888888888555554444322345577**************9999****************9986 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   4.9e-11   5.2e-08       1     101 []     111     232 ..     111     232 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 4.9e-11
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss.kgl....kvkfvq..adaral..................pfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  + ++G+G+Gr +  ++++   g+   +++ D+s+++l++ak++l++ kg+    + +f++  +da                     +   + fdlvvc+  ++ h +   + + l++i+++lkpgG
  MMETSP0890-20130614|29363_1 111 VAEIGSGGGRIALYMANQ--DGI-NTLTLFDVSAKMLNKAKTQLAQiKGAefvqRCRFIHidGDADGStgnpffapasstnnkaypECTRAAFDLVVCF-DVMVHMDLHTMFRCLKRIFSLLKPGG 232
                  579******988777655..476.9******************998766566888888665555533334444444444444444334888*******6.55***********************9 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.4e-08   5.7e-05       3     116 ..     110     239 ..     108     240 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 5.4e-08
    PF13659.1   3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlar...aglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrd......................lydafleaaarllkpgGvlvlivp 116
                  +v ++g+G G ++l+++ +   + l+ ++++++ ++ a++ la+   a+  +r+r+++           +g +d   +np + p+++++++  +                      ++ + l+++++llkpgG + + ++
  MMETSP0890-20130614|29363_1 110 QVAEIGSGGGRIALYMANQDgINTLTLFDVSAKMLNKAKTQLAQikgAEFVQRCRFIHI----------DGDADGSTGNPFFAPASSTNNKAYPectraafdlvvcfdvmvhmdlhTMFRCLKRIFSLLKPGGHAFISTS 239
                  799********99999977449***************9988766322333344444443..........4666666677766665444333333566666666666666666665566699*************999886 PP

>> PF01739.13  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.69   7.2e+02      58      82 ..     128     149 ..      92     169 .. 0.69
   2 !   20.3   0.0   2.3e-07   0.00024     134     180 ..     197     243 ..     182     258 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.69
   PF01739.13  58 pkalklkvkilAtDidlkalekAka 82 
                  ++ ++    ++  D+++k+l+kAk 
  MMETSP0890-20130614|29363_1 128 QDGIN---TLTLFDVSAKMLNKAKT 149
                  44444...35567999999999986 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 2.3e-07
   PF01739.13 134 lsklDvifcRnvliYfdeetqekilerfaealkpgGlLflGhsEslk 180
                     +D+++c +v++ +d +t  + l+r+ + lkpgG+ f+  s+ l+
  MMETSP0890-20130614|29363_1 197 RAAFDLVVCFDVMVHMDLHTMFRCLKRIFSLLKPGGHAFISTSNLLT 243
                  568*************************************9999887 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.3e-07   0.00024      31      89 ..     107     169 ..      89     242 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.3e-07
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.....--EEE-S CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen....vevlasd 89 
                   + +v+++G+G G +++ +a++   +++tl+D++a+ ++ ak++l++ k  +    +++++ d
  MMETSP0890-20130614|29363_1 107 DNVQVAEIGSGGGRIALYMANQDGINTLTLFDVSAKMLNKAKTQLAQIKGAEfvqrCRFIHID 169
                  55679**************************************99987765433234555555 PP

>> PF06859.7  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.5e-06    0.0069       2     104 ..     200     297 ..     199     303 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.5e-06
    PF06859.7   2 fdvilalsvtkWvhlnwgdeGlkklfrkiyrllrpgGil......ilePqafdsykkrkklsetlkknyekiklkPdafeellleaevgfeevellavleseskgfkrp 104
                  fd+++++ v   vh++ +   + + +++i++ll+pgG        +l P ++d ++++++ +         i + Pda ++l+    vg++ v++l++++s++  ++r 
  MMETSP0890-20130614|29363_1 200 FDLVVCFDVM--VHMDLH--TMFRCLKRIFSLLKPGGHAfistsnLLTPDGWDRFRRQRRSTV-----GGFIFVTPDAVRHLIKR--VGLTLVRELDSPDSTNTYYNRD 297
                  8999999985..888776..699999***********75222223589******999887543.....35688889999887766..7888888888888888888775 PP

>> PF01234.12  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.5   1.6e+03     106     153 ..      68     121 ..      62     154 .. 0.59
   2 ?   12.1   0.0   5.8e-05     0.061     166     197 ..     204     237 ..     192     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.5
                  --HHHHHHHHHH--...----HHHHHHHHHHHEEEEEE--TTSSS-----...S CS
   PF01234.12 106 dWspvvkvicelEg...dreklqekeeklRklvkrvlkvdvhqspvvlag...v 153
                  dW++++    ++     ++  +++ ++ l + +k +l++d  q   +++g   +
  MMETSP0890-20130614|29363_1  68 DWVKTMAKGINVQVlgdEWAPIEDTQRVLDEWLKPLLSIDNVQVAEIGSGggrI 121
                  666555544444332245555666666666677777777777777666654443 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.8e-05
                  S-HHH.H-SSHHHHHHHHHHHHTTB-----.EEE CS
   PF01234.12 166 fclea.acedleeylralrnlasllkpGGh.lvl 197
                   c+++ +  dl++ +r+l+++ sllkpGGh ++ 
  MMETSP0890-20130614|29363_1 204 VCFDVmVHMDLHTMFRCLKRIFSLLKPGGHaFIS 237
                  4555414579*******************93444 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0     0.001         1      39     107 ..      68     142 ..      50     154 .. 0.71
   2 ?    2.7   0.0     0.069        72     124     157 ..     201     237 ..     195     243 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.001
   PF05148.10  39 eafdlyhkgfrsqvkkWPenPld....viirklk..kkkdnlvvadlGcGeakiaeavrekekvrsfdlvavner 107
                  +  +   kg + qv +    P++    v+ ++lk     dn+ va++G G  +ia  + +++ ++++ l  v  +
  MMETSP0890-20130614|29363_1  68 DWVKTMAKGINVQVLGDEWAPIEdtqrVLDEWLKplLSIDNVQVAEIGSGGGRIALYMANQDGINTLTLFDVSAK 142
                  555666778888886655555541111334555566567999*************99999999999988877655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.069
   PF05148.10 124 dvavfclslmg.tnladflkeanrv...lkvGGllkva 157
                  d++v c+ +m+  +l+++ +  +r+   lk+GG+ +++
  MMETSP0890-20130614|29363_1 201 DLVV-CFDVMVhMDLHTMFRCLKRIfslLKPGGHAFIS 237
                  5555.666555268887776666654449****99885 PP

>> PF02675.10  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00028       0.3      17      92 ..     141     220 ..     127     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00028
   PF02675.10  17 aerlekilteaaeaagatvlni.afhkfep..qGvsvvvllaE.SHisiHtwpEsgyaaiDvftCgeisplkaleyliea 92 
                  a+ l+k+ t++a++ ga+ ++   f + +    G ++  + a  S      +pE  +aa+D+++C ++  +  l+++ + 
  MMETSP0890-20130614|29363_1 141 AKMLNKAKTQLAQIKGAEFVQRcRFIHIDGdaDGSTGNPFFAPaSSTNNKAYPECTRAAFDLVVCFDVMVHMDLHTMFRC 220
                  67888899999999999998873555554455999999888754888899***************997666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.40s 00:00:01.05 Elapsed: 00:00:01.34
# Mc/sec: 549.02
//
Query:       MMETSP0890-20130614|29385_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0078   16.1   4.6     0.0078   16.1   3.2    5.0  5  PF00020.13 TNFR/NGFR cysteine-rich region


Domain annotation for each model (and alignments):
>> PF00020.13  TNFR/NGFR cysteine-rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.4    0.0024        33      15      39 .]      40      60 ..      34      60 .. 0.87
   2 !    5.3   2.5    0.0013        18      15      36 ..      60      82 ..      58      85 .. 0.90
   3 ?    0.2   5.9     0.054   7.4e+02       1      39 []      67     109 ..      67     109 .. 0.72
   4 !   16.1   3.2   5.7e-07    0.0078      13      39 .]     107     133 ..      91     133 .. 0.88
   5 ?   -2.5   0.5      0.38   5.1e+03      15      24 ..     161     165 ..     155     174 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0024
                 EEEEE-B-TTCEEEB--BTTB--EE CS
   PF00020.13 15 ClsCskCepgtvlvspCtetqnTvC 39
                 C     C ++++ + pCt+  + vC
  MMETSP0890-20130614|29385_1 40 C----DCGSDEYISIPCTDVADVVC 60
                 5....6999**********999999 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0013
                 EEEE.E-B-TTCEEEB--BTTB- CS
   PF00020.13 15 ClsC.skCepgtvlvspCtetqn 36
                 C  C s+C+ +++  ++C + ++
  MMETSP0890-20130614|29385_1 60 CATCsSSCPVNHYIAQECGDRSD 82
                 999*9*************98877 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.054
                  C-TTEEEESSCS.EE....EEEEE-B-TTCEEEB--BTTB--EE CS
   PF00020.13   1 CeegtYtdsknh.rq....ClsCskCepgtvlvspCtetqnTvC 39 
                  C+ ++Y ++  + ++    C +C+ C    +    C+  ++T C
  MMETSP0890-20130614|29385_1  67 CPVNHYIAQ-ECgDRsdigCMRCTDCGTPYYNAGGCQGAEDTIC 109
                  666666663.333222223*********9999**********99 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 5.7e-07
                  EEEEEEE-B-TTCEEEB--BTTB--EE CS
   PF00020.13  13 rqClsCskCepgtvlvspCtetqnTvC 39 
                   +Cl+C+ C p + ++spC +  ++ C
  MMETSP0890-20130614|29385_1 107 TICLPCTVCAPMEAEISPCAAGFDRIC 133
                  68********************99999 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 0.38
                  EEEEE-B-TT CS
   PF00020.13  15 ClsCskCepg 24 
                  C     C+  
  MMETSP0890-20130614|29385_1 161 C-----CHDQ 165
                  5.....4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 780.63
//
Query:       MMETSP0890-20130614|29408_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-58  197.0   0.2    2.2e-58  196.8   0.2    1.0  1  PF03997.7 VPS28 protein


Domain annotation for each model (and alignments):
>> PF03997.7  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.2   1.6e-62   2.2e-58       1     187 [.      34     222 ..      34     223 .. 0.92

  Alignments for each domain:
  == domain 1    score: 196.8 bits;  conditional E-value: 1.6e-62
                  HHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHHHHHHHTTTTT.------------------HHHHH.T--XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF03997.7   1 lselyailkaleklekayikDavsaseytstcekllkqykvllksvkke.evssiedFakkyrldcpaaieRi.kegipit.vedsiaassdkasvakviaeivqnFitvlDalrLnirakDqlhPllseLleslnrlselpedfearsklkkWlvrlnklsisDelsdeqvRellfDlesaYaefyklL 187
                  +++lya++k+ ekleka+ +D++s+++y+++c +l++q+k+  +  + + +++s +dF++ y++dcp+a eR+ + g+p+t + +++ +ss  a  a  +ae+vq+Fit +Dal+L+ ra+D+++Pl+s+L++sl r+ +  +  ++r+kl++Wl  ln++ +++e+s+eq+R+l fDl+ aY ef++ L
  MMETSP0890-20130614|29408_1  34 MADLYALIKTCEKLEKAFARDSISPEHYETACLRLISQFKASESALQRDeTITSADDFMRDYKMDCPRARERLlRTGVPATtLAQAAGPSSGAADAALRVAECVQHFITAMDALKLEQRAVDEVQPLISDLMNSLTRVPN-ANCENGRNKLTEWLFALNSMRAAEEISEEQARQLSFDLDAAYSEFHRSL 222
                  89**************************************98877666559*********************73689997615677789999****************************************99999988.445579***************************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.44s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 1246.11
//
Query:       MMETSP0890-20130614|29423_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   34.1   2.0      3e-08   33.3   1.4    1.4  1  PF12907.2 Zinc-binding
  ------ inclusion threshold ------
      0.032   13.6   0.0      0.037   13.4   0.0    1.3  1  PF10083.4 Uncharacterized protein conserved in bacteria (DUF2321)
       0.16   12.4   2.0       0.17   12.3   0.8    1.5  1  PF09538.5 Protein of unknown function (FYDLN_acid)


Domain annotation for each model (and alignments):
>> PF12907.2  Zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   1.4   6.6e-12     3e-08       2      39 ..      38      75 ..      37      76 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.6e-12
    PF12907.2  2 iiCkiCrqtFmcttseklLkeHaenKHpktdveeCFPe 39
                 + C +C + F  t + +  + Hae+KH  ++++eCFPe
  MMETSP0890-20130614|29423_1 38 VFCTVCGTSFKLTKRNVDARTHAESKHATKTFAECFPE 75
                 67***************************99******8 PP

>> PF10083.4  Uncharacterized protein conserved in bacteria (DUF2321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     8e-06     0.037      59      90 ..      28      59 ..      11     105 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8e-06
    PF10083.4 59 lslgsdydaPkyCknCGkafPWtkrkleaake 90
                 l  + + ++  +C  CG++f  tkr+++a  +
  MMETSP0890-20130614|29423_1 28 LRKQAKAKPDVFCTVCGTSFKLTKRNVDARTH 59
                 33334445668*****************9764 PP

>> PF09538.5  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   3.7e-05      0.17      25      89 ..      36     103 ..      32     112 .. 0.44

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.7e-05
    PF09538.5  25 dPivcpkcgeevepekeakkkavaadeeeea.........aeekeeeeeeeeddvledddeeedldddledead 89 
                    + c  cg+++++ k+   ++++a++++++         +       ++ee+++l+++ + + +    ++++d
  MMETSP0890-20130614|29423_1  36 PDVFCTVCGTSFKLTKRNVDARTHAESKHATktfaecfpeV------IKAEEEEKLNAAGSGDASTKANSKKKD 103
                  5689**********943333333333333223564443320......222222222222222111111111222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       676  (0.0494441); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 436.35
//
Query:       MMETSP0890-20130614|29438_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1288.04
//
Query:       MMETSP0890-20130614|29451_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   13.3   2.1       0.21   11.5   0.3    2.1  2  PF11043.3 Protein of unknown function (DUF2856)


Domain annotation for each model (and alignments):
>> PF11043.3  Protein of unknown function (DUF2856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.037     5e+02      39      67 ..      94     122 ..      83     134 .. 0.79
   2 ?   11.5   0.3   1.6e-05      0.21      33      83 ..     160     211 ..     150     215 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.037
    PF11043.3  39 etkaerefrrsiwlaekeekerirqtsir 67 
                  + k+ +e  ++i +  k+eke  + t i+
  MMETSP0890-20130614|29451_1  94 KEKKTNEIDDDIVVEAKQEKESSTGTQIQ 122
                  4466678889999999****998888775 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 1.6e-05
    PF11043.3  33 ilslpq.etkaerefrrsiwlaekeekerirqtsirpfrkatytkfieidpr 83 
                   lslp+ e+ ++r   r+    e++ +e+ +q  +  f +a ytk+ie dp 
  MMETSP0890-20130614|29451_1 160 RLSLPRfEAVTKRAAERKREAVENRGNEKKNQNRLETFDRAAYTKIIESDPN 211
                  577876466666777777778899999999********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.41s 00:00:01.05 Elapsed: 00:00:00.94
# Mc/sec: 864.22
//
Query:       MMETSP0890-20130614|29458_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.75
# Mc/sec: 175.73
//
Query:       MMETSP0890-20130614|29463_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-05   23.9   0.2    0.00059   19.8   0.0    2.1  2  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
  ------ inclusion threshold ------
       0.15   11.6   0.9       0.21   11.1   0.6    1.3  1  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.023   1.5e+02      36      51 .]      18      33 ..       2      33 .. 0.79
   2 !   19.8   0.0   8.7e-08   0.00059       2      35 ..      37      69 ..      36      70 .] 0.91

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.023
                 ----EEE-----EEEE CS
   PF00415.13 36 vrvvqvacGgsHtlal 51
                  r++ v++ ++H l++
  MMETSP0890-20130614|29463_1 18 MRIIIVSASANHALFV 33
                 58999*******9875 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 8.7e-08
                 TEEEEE---------.--------S-EE-GGG-- CS
   PF00415.13  2 GrVysWGrndyGqLGkggseenvlvPvkveglsg 35
                 G+  s G +  G+LG +g+e nv+ P+++  l+g
  MMETSP0890-20130614|29463_1 37 GSALSSGVGALGRLG-HGNEANVNAPKRIRALEG 69
                 66678899*******.*************99987 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   3.1e-05      0.21       4      27 ..      23      46 ..      20      49 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.1e-05
                 EE-----EEEE-.---EEEE---T CS
    PF13540.1  4 vsaGgyHtcaLtsdGaVlcWGsNs 27
                 vsa ++H++++t+ G+ l+ G + 
  MMETSP0890-20130614|29463_1 23 VSASANHALFVTACGSALSSGVGA 46
                 9**************999988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 258.07
//
Query:       MMETSP0890-20130614|29459_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   21.6   1.0    0.00014   21.2   0.7    1.2  1  PF01171.15 PP-loop family
     0.0083   15.9   1.4      0.014   15.2   1.0    1.3  1  PF05680.7  ATP synthase E chain


Domain annotation for each model (and alignments):
>> PF01171.15  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.7   2.1e-08   0.00014      55     119 ..      42     106 ..      26     129 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.1e-08
                  HHCT--EEEE---H....HHHTT--TTTHHHHHHHHHHHHCHHH-..-EEE----HHHHHHHHHHHHC- CS
   PF01171.15  55 kklnipleiekvdv....akkkgknleeaARelRYellkelakkegaevlllAhhadDqaEtfllrllr 119
                   +  i+ + + +d+    ++ +  +l++aAR +R++++ ++++++    ++ Ah+ +D +E    +++r
  MMETSP0890-20130614|29459_1  42 PQCRIEAFANVTDLqdndSQADAADLDAAARIARFAWFYKTCHRY---RIIAAHQDKDNIEAQ-EKIFR 106
                  4555555544444454566677899*****************999...7899********964.23333 PP

>> PF05680.7  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.0     2e-06     0.014      26      79 ..      82     131 ..      78     141 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2e-06
    PF05680.7  26 akhqrslkakakkeekereyeaqekliekakaayakkkqakseakslaegssak 79 
                    h++++     +++++ ++eaqek+ +++++++ k +q+ + a+++a+ ss++
  MMETSP0890-20130614|29459_1  82 TCHRYRII---AAHQDKDNIEAQEKIFREQQEEKLKLQQEAQ-ARAAASFSSTE 131
                  56888888...89999*****************999999999.99999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       926  (0.0677297); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 469.42
//
Query:       MMETSP0890-20130614|29461_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-24   83.5   5.7    4.1e-06   26.7   0.0    7.2  6  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
      9e-17   60.1  30.3    1.9e-07   30.3   0.9    5.9  6  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.014        98      36      51 .]      10      25 ..       3      25 .. 0.84
   2 !   12.0   0.0   2.4e-05      0.17       2      51 .]      29      79 ..      28      79 .. 0.86
   3 !   21.8   0.1   2.2e-08   0.00015       4      50 ..      86     135 ..      85     136 .. 0.89
   4 !   26.7   0.0   6.1e-10   4.1e-06       1      51 []     140     191 ..     140     191 .. 0.91
   5 !    9.6   0.1   0.00013      0.92      32      51 .]     224     241 ..     194     241 .. 0.65
   6 !    5.9   0.0    0.0019        13       1       9 [.     244     254 ..     244     294 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.014
                 ----EEE-----EEEE CS
   PF00415.13 36 vrvvqvacGgsHtlal 51
                  ++v+va+G  +++++
  MMETSP0890-20130614|29461_1 10 APIVSVAAGKKFSIVI 25
                 579**********986 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.4e-05
                 TEEEEE---------..--------S-EE-GGG------EEE-----EEEE CS
   PF00415.13  2 GrVysWGrndyGqLG.kggseenvlvPvkveglsgvrvvqvacGgsHtlal 51
                 G+ y++G ++ G LG   + +++ ++ ++++ l+  rv  +a+G +H l++
  MMETSP0890-20130614|29461_1 29 GQAYGCGDGSTGVLGsACKPCSSATTLRRIPELRMTRVWLIAAGTDHALFV 79
                 899************766667777777789999999***********9875 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2.2e-08
                  EEEE---------.--------S-EE-GGG--....----EEE-----EEE CS
   PF00415.13   4 VysWGrndyGqLGkggseenvlvPvkveglsg....vrvvqvacGgsHtla 50 
                  + ++G n++GqLG +g+  ++ +P +v   ++    v ++  a+G++H+l+
  MMETSP0890-20130614|29461_1  86 LLACGTNTHGQLG-VGDHLPRYKPEPVICTRSqrklVGISCLAAGARHSLC 135
                  689**********.************776666788999999999*****98 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 6.1e-10
                  TTEEEEE---------.--------S-EE-GGG--..----EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsg..vrvvqvacGgsHtlal 51 
                  +G +ysWG  ++GqLG + + ++ ++ + v   +   +++++ a+G+  tlal
  MMETSP0890-20130614|29461_1 140 EGLIYSWGAARHGQLG-HADGRSTNYARAVRDGRItlKPIKSLAAGDAITLAL 191
                  79**************.999999999988877777899************997 PP

  == domain 5    score: 9.6 bits;  conditional E-value: 0.00013
                  GG------EEE-----EEEE CS
   PF00415.13  32 glsgvrvvqvacGgsHtlal 51 
                  ++  ++++++a+G++H lal
  MMETSP0890-20130614|29461_1 224 MP--EHIIDIAAGYDHALAL 241
                  33..46***********997 PP

  == domain 6    score: 5.9 bits;  conditional E-value: 0.0019
                  TTEEEEE-..- CS
   PF00415.13   1 dGrVysWG..r 9  
                  +G VysWG  r
  MMETSP0890-20130614|29461_1 244 SGCVYSWGalR 254
                  69******554 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00013      0.86       1      27 [.      12      38 ..      12      40 .. 0.94
   2 !   14.4   0.1   2.7e-06     0.019       4      30 .]      69      96 ..      69      96 .. 0.96
   3 !    9.2   1.2   0.00012      0.83       4      30 .]     126     153 ..     123     153 .. 0.88
   4 !   15.7   0.2   1.1e-06    0.0076       1      29 [.     178     206 ..     178     207 .. 0.96
   5 !   30.3   0.9   2.8e-11   1.9e-07       1      24 [.     228     251 ..     228     252 .. 0.96
   6 ?   -2.2   0.3      0.45     3e+03      16      25 ..     304     313 ..     304     318 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00013
                 --EEE-----EEEE-.---EEEE---T CS
    PF13540.1  1 VvsvsaGgyHtcaLtsdGaVlcWGsNs 27
                 +vsv+aG  +++++   G+ +++G++s
  MMETSP0890-20130614|29461_1 12 IVSVAAGKKFSIVIFGPGQAYGCGDGS 38
                 79***********************97 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.7e-06
                 EE-----EEEE-.---.EEEE---TTST CS
    PF13540.1  4 vsaGgyHtcaLtsdGa.VlcWGsNssGQ 30
                 ++aG +H++++++  + +l++G N++GQ
  MMETSP0890-20130614|29461_1 69 IAAGTDHALFVVNQARlLLACGTNTHGQ 96
                 89**********98889**********9 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00012
                  EE-----EEEE-.-.--EEEE---TTST CS
    PF13540.1   4 vsaGgyHtcaLtsd.GaVlcWGsNssGQ 30 
                  ++aG++H++   ++ G +++WG   +GQ
  MMETSP0890-20130614|29461_1 126 LAAGARHSLCYCQNeGLIYSWGAARHGQ 153
                  79*****9998875499******99999 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 1.1e-06
                  --EEE-----EEEE-.---EEEE---TTS CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssG 29 
                  ++s++aG+  t+aL+  G V+++G+  +G
  MMETSP0890-20130614|29461_1 178 IKSLAAGDAITLALDIQGVVYSCGDARCG 206
                  79***********************9998 PP

  == domain 5    score: 30.3 bits;  conditional E-value: 2.8e-11
                  --EEE-----EEEE-.---EEEE- CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWG 24 
                  +++++aG++H++aL+s+G V++WG
  MMETSP0890-20130614|29461_1 228 IIDIAAGYDHALALDSSGCVYSWG 251
                  689********************* PP

  == domain 6    score: -2.2 bits;  conditional E-value: 0.45
                  .---EEEE-- CS
    PF13540.1  16 sdGaVlcWGs 25 
                  sdG++ ++G+
  MMETSP0890-20130614|29461_1 304 SDGTIAACGD 313
                  6899888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.41s 00:00:01.09 Elapsed: 00:00:01.05
# Mc/sec: 938.00
//
Query:       MMETSP0890-20130614|29476_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        82  (0.00599766); expected 273.4 (0.02)
Passed bias filter:                       81  (0.00592452); expected 273.4 (0.02)
Passed Vit filter:                         1  (7.31422e-05); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 198.45
//
Query:       MMETSP0890-20130614|29485_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.8e-126  419.1   0.0   9.9e-126  418.9   0.0    1.0  1  PF01053.15 Cys/Met metabolism PLP-dependent enzyme
    5.6e-08   32.1   1.1    7.6e-08   31.6   0.7    1.2  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
    3.5e-07   29.5   0.9    7.4e-07   28.4   0.6    1.4  1  PF01212.16 Beta-eliminating lyase
    3.7e-07   29.3   0.2    5.1e-07   28.8   0.1    1.3  1  PF00155.16 Aminotransferase class I and II
    0.00012   20.8   0.1    0.00019   20.1   0.1    1.3  1  PF00266.14 Aminotransferase class-V
  ------ inclusion threshold ------
      0.019   14.4   0.0      0.044   13.2   0.0    1.5  1  PF03625.9  Domain of unknown function DUF302
       0.23   11.7   1.1       0.42   10.8   0.0    1.8  2  PF10824.3  Protein of unknown function (DUF2580)


Domain annotation for each model (and alignments):
>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.9   0.0    5e-129  9.9e-126       1     385 [.       4     384 ..       4     385 .. 0.97

  Alignments for each domain:
  == domain 1    score: 418.9 bits;  conditional E-value: 5e-129
                  HHHHHH----GGGCTT-BSS--B---SBB-BCSCCHHCCCTTCE---SBTTT--HHHHHHHHHHHHHCT-SEEE-B----HHHHHHHHCCS----EEEEESS----HHHHHHCCHHH---EEEEESTTCHHHHHHHTTT.TEEEEEEESSBTTTTB---HHHHHHHHHHCSS-EEEEE-TTTHHHH--GGG----EEE--TTTTT----S-----EEESE-HHHHHHHHHHHHH---B--HHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSSGG....EEEEEESS-HHHHHHHHHH-S.SSEESS-----S-EEE-CCCTTTTTSHHHHHHH----TTEEEEE-----HHHHHHHHHHHH CS
   PF01053.15   1 dtlavhagqekdeaqtgavvvpiyatstykfksveeaalfageekgyeYsRsgnPtrevleeriaaLeggeaalavsSGmaAiaaallallkaGdevvatddlYggtqrllekvlkklgvevkfvdtsdleelekaikp.ntklvylEtptnpllkvvDieaiaklakkkgdvlvvvDntfaspllqrpLelgaDivvhSaTKylnGhsdvvgGvvvvkgkeelakklkflqnalGavlspfdawlllrGlkTLslRverhsenAlklAefLekhpkvekvyYpgLeshpqhelakkqlkgf..ggvlsfelkseeeaakkfldklk.lfslaeslGgvesLishpatmthasipkeereaagvtddLvRlsvGiEdvdDliadleqal 385
                  dt++vhag ++d+ +tga+ +pi++++t++++s       +  +kgy Y+R++nPt++vlee++aaLe+++ a+++s+GmaA+++++ a+l++Gd+ v+td+ Yggt+r+ +k + + g+e++fvd  d++++eka+ p +tkl++ Etp+np+l ++D++ai+++a+k + +l v D+tfa+pl+ +p++lgaD+++hS+TKy +Gh+ +vgG+v++k+ +e+ ++l+f+qn+ G+++ p++a+l+l+  kT+++R +++++nA+k+AefL++hpkv +v YpgL+s pq ela kq++++  gg+++ e+k++ +a +k++d+ +  +sl e+lG+ves+i++p +mtha++ ke+r + g++d+++R+s+GiEd +Dlia l+ al
  MMETSP0890-20130614|29485_1   4 DTKLVHAGVSPDP-ATGAILTPIVQATTFVQES-----IDQYMAKGYSYTRTTNPTVHVLEEKVAALENAAGACCFSTGMAATVTVMSAFLSQGDHCVLTDCSYGGTNRVARKQFMQYGIEFSFVDFRDPANVEKAVIPgKTKLIFSETPANPTLTLTDVRAISDIAQKYN-ILHVCDATFATPLMLKPIDLGADMSLHSTTKYFDGHNMTVGGTVASKT-KEIDERLHFVQNMHGNIMTPHTAFLTLQACKTMAIRCQKQADNAQKIAEFLQAHPKVDWVKYPGLASFPQKELADKQHNNGfhGGMIACEVKGGIAAGRKLMDSAQrPWSLCENLGAVESIITCPSVMTHANMLKEDRLKVGISDGFIRISCGIEDPQDLIASLKIAL 384
                  79********997.******************4.....5566899*******************************************************************************************9999******************************7.*********************************************888.****************************************************************************998752355**********99*****98862689*******************************************************998 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.7   3.9e-11   7.6e-08      15     201 ..      40     228 ..      27     275 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.9e-11
   PF01041.12  15 lksg..wltttgkeveeFEkafaeylgvkhavavssGtaAlllaLralgigpGdeVIvpsltfvAtanav....lqlGakpvfvDvdpetlnldpaaieaaitp.rtkaIl...pVhlyGqpadmdairaiaaehglkvieDaAqAlGatykGkkvGt.lgdaatfSffptKnlttgeGGavvtdDpelaeraralrn 201
                  +++g   ++tt+++v  +E+++a++ +++ a  +s+G aA + ++ a+  ++Gd ++++  ++ +t  ++     q+G +  fvD        dpa++e+a+ p +tk I+   p++    + d+ ai +ia+++++  + Da  A     k   +G+ ++  +t   f  +n+t+  GG v ++ +e++er++  +n
  MMETSP0890-20130614|29485_1  40 MAKGysYTRTTNPTVHVLEEKVAALENAAGACCFSTGMAATVTVMSAFL-SQGDHCVLTDCSYGGTNRVArkqfMQYGIEFSFVDFR------DPANVEKAVIPgKTKLIFsetPANPTLTLTDVRAISDIAQKYNILHVCDATFATPLMLKPIDLGAdMSLHSTTKYFDGHNMTV--GGTVASKTKEIDERLHFVQN 228
                  444442234559***********************************65.58**************98762222689**********......*****988655399**95444899999999*****************************999996366778888999****99..7**********999985554 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.6   3.8e-10   7.4e-07      26     271 ..      49     271 ..      29     278 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3.8e-10
                  ...HHHHHHHHHHHHH------EE-----HHHHHHHHHHHHHT-EEEEETT-HHHHSS---HHHH.H--EEEEE--TT.S---HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE-E-HHHHHHHHT--HHHHHTT-SEEEE-S--...--------EEE--HHHHHHHHHH.HHH----......TTT-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHCHHH-E CS
   PF01212.16  26 gedktvarledavaellgkeaalfvpsGtaAnqialsallqreeevvvtepshihfdetgaikel.ggvklrtlknkeagkldleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlDgARlaeaakslgeiakeiasyaDsvtislkK...dlganvGgilafrdkflaeaveq.rkylggglrqaGvlaalelyleaglralelglarlerdhktaeqlaealeevr 271
                   +++tv+ le++va+l ++  a  + +G aA   ++sa l +++  v+t+ s++ +      +++  g+++  ++ ++     ++++e+++ +  +   +++li  +++ n      ++l  +r+i++ia++y+i  ++D++       +++  +k i  +aD+   s +K   +  + vGg +a + k ++e+ ++ ++++g+ +  + +           l a++ ++ r +++ ++a++ ae l++ +
  MMETSP0890-20130614|29485_1  49 TTNPTVHVLEEKVAALENAAGACCFSTGMAATVTVMSAFLSQGDHCVLTDCSYGGTNRVARKQFMqYGIEFSFVDFRD-----PANVEKAVIP--G---KTKLIFSETPAN----PTLTLTDVRAISDIAQKYNILHVCDAT------FATPLMLKPIDLGADMSLHSTTKyfdGHNMTVGGTVASKTKEIDERLHFvQNMHGNIMTPHTAFLT--------LQACKTMAIRCQKQADNAQKIAEFLQAHP 271
                  5799************************************************99999998877777788888888777.....9*********..5...7***********....59*******************999986......55677777777888888888888553345789*****************45588888886644444........78889999999999999999999888765 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   2.6e-10   5.1e-07      32     192 ..      41     179 ..      20     269 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.6e-10
                  CCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---E.EEEEE-EETTTTEE-HHHHHHHHTT--SS-E.....EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES--- CS
   PF00155.16  32 laggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkeapegnk..ktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                  ++g +++++++++  + lee++a + +        + +a ++++G  a   +  ++l+   gd  ++ d +y+  ++++r   ++  ++++        +d+ +  + +++a    +  ktk+++ e+p NPt t+ +   + ++   a+kyn+l ++D ++a+
  MMETSP0890-20130614|29485_1  41 AKGYSYTRTTNPT-VHVLEEKVAALEN--------AAGACCFSTGMAATVTVMSAFLS--QGDHCVLTDCSYGGTNRVARKQFMQyGIEFS-------FVDFRDPAN-VEKAV---IpgKTKLIFSETPANPTLTLTDVRAISDI---AQKYNILHVCDATFAT 179
                  5555666677777.6679999999999........999********999999999998..******************9987777666777.......666666666.33322...13368***********9666666655555...************9986 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   9.8e-08   0.00019       7     202 ..      17     200 ..      15     232 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.8e-08
                  TS----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT-S-GGGEE---------HHHHHH---------EEEEETT--GG.GTHHHHHHHHH---EEEEE-B-----B-GGGHHH.H--TTEEEEEEESB-S----B--HHHHHHHHHH---EEEEE---STTTS---HHHHT-SEEE------ CS
   PF00266.14   7 AttqkpqeVldalqeyytdyngnvhrsvhtlgkeatealeearekvaelinaeseeeiiFtsgttealnlvalslarslkagdeilvteaehha.nlvpwqelakrtgakvkvipvdeegsldldelek.lltpktklvaithvsnvtGvvqpveeiaklakeagalvvvDaaqavghipidvkklgvDflafSgHKl 202
                  At  +  ++++a+  + +++  +   + +++++ ++  +   +ekva+l na+      F +g   a  +v++++   l++gd+ ++t+  + + n+v+ ++ + + g +  ++ +      d++++ek  +  ktkl++     n t ++ +v +i ++a+++++l v+Da  a + + ++  +lg+D+   S+ K+
  MMETSP0890-20130614|29485_1  17 ATGAILTPIVQAT-TFVQESIDQYMAKGYSYTRTTNPTVHVLEEKVAALENAAG--ACCFSTGMA-ATVTVMSAF---LSQGDHCVLTDCSYGGtNRVARKQFM-QYGIEFSFVDF-----RDPANVEKaVIPGKTKLIFSETPANPTLTLTDVRAISDIAQKYNILHVCDATFATPLM-LKPIDLGADMSLHSTTKY 200
                  6666666666664.3556666666677899999999999999**********97..666655555.777888888...9************9882555555555.77888888887.....4555555405679*************************************98877654.455568888888888775 PP

>> PF03625.9  Domain of unknown function DUF302
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05     0.044      17      44 ..     165     192 ..     157     197 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.2e-05
    PF03625.9  17 ppykilgfCNpklatealqadpdiglll 44 
                  ++y il +C+ ++at+++ +  d+g+++
  MMETSP0890-20130614|29485_1 165 QKYNILHVCDATFATPLMLKPIDLGADM 192
                  78***********************997 PP

>> PF10824.3  Protein of unknown function (DUF2580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.1   4.2e+03      35      55 ..      59      79 ..      49      86 .. 0.70
   2 ?   10.8   0.0   0.00022      0.42      18      81 ..     204     268 ..     200     271 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.1
    PF10824.3 35 gvaaavaathGpicaafnaal 55
                 + +aa +++ G+ c+ +  a+
  MMETSP0890-20130614|29485_1 59 EKVAALENAAGACCFSTGMAA 79
                 456777777777777776655 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00022
    PF10824.3  18 khdevAaeiasavaaaagvaaavaathGpicaafnaala.eaeearsaagealaaastdlaekLr 81 
                  ++ +v +++as +++ ++    v++ hG i+ +++a l+ +a ++++  ++++a++++++ae L+
  MMETSP0890-20130614|29485_1 204 HNMTVGGTVASKTKEIDERLHFVQNMHGNIMTPHTAFLTlQACKTMAIRCQKQADNAQKIAEFLQ 268
                  5668899999**************************99868999*****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.73
# Mc/sec: 1270.40
//
Query:       MMETSP0890-20130614|29495_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-19   68.7   0.1    4.5e-19   68.4   0.1    1.1  1  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1   3.3e-23   4.5e-19       2     102 ..      24     115 ..      23     117 .. 0.94

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 3.3e-23
                  SBEEEEEEEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE.EEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHH CS
   PF00169.24   2 ikeGyllkksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc.tvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknl 102
                  +++G+l+k+s +lk w++ryf+L++++L++ ks+     +ap g+i+l +c tvk a+ +       ++n +e+++ d+ +yl++a++e+e+ +W+ a+ ++
  MMETSP0890-20130614|29495_1  24 EYQGWLTKQSVWLKDWRRRYFMLKDSKLFFAKSEM----AAPHGMIDLASCmTVKSAEYK-----AHKRNALEVSTSDT-TYLMFADTEKEKDDWIGAIGRA 115
                  689*******************************7....9***********888777776.....8*************.******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.60
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|29501_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-12   46.1   0.7    4.3e-12   46.1   0.5    4.2  4  PF12542.3 Pre-mRNA splicing factor
    5.9e-11   42.0  11.4    5.9e-11   42.0   7.9    4.5  3  PF10197.4 N-terminal domain of CBF1 interacting co-repressor CIR
  ------ inclusion threshold ------
        3.4    6.9   6.0       0.24   10.7   0.5    1.7  2  PF07994.7 Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> PF12542.3  Pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.7     0.012        53      32      74 ..      15      55 ..       2      56 .. 0.66
   2 !   46.1   0.5   9.5e-16   4.3e-12       4      90 ..      63     149 ..      60     154 .. 0.75
   3 ?   -2.3   7.1       1.3   5.7e+03      30      74 ..     161     204 ..     152     209 .. 0.70
   4 ?   -0.5   1.0      0.35   1.6e+03      25      50 ..     279     304 ..     255     330 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
    PF12542.3 32 ridkllekkdeeeakkkskeeektkaaqeanserdtarklreD 74
                  ++k ++ +++ee+++k+  e ++++++  + e d++rkl++D
  MMETSP0890-20130614|29501_1 15 NVEKVWLAEKKEEEEAKKLAELEKQIKE--EREIDELRKLQQD 55
                 6777766666666555555554433333..7899999999988 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 9.5e-16
    PF12542.3   4 eerleWMYegpe.kskeaeereeyllGKkridkllekkdeeeakkkskeeektkaaqeanserdtarklreDPLlaikkqeqekkkql 90 
                  +++leWMYegp  +  +a+  eey lGKk    +  k + +  ++ks   ++     ++n+++++  +++eDPL ++++ e++ ++++
  MMETSP0890-20130614|29501_1  63 KQKLEWMYEGPGsAIASAAAAEEYKLGKKAYVPTTAKTELSRLEDKSAAGST-WFDAKSNNANEQFVRVNEDPLYKMRQSEKRVRETT 149
                  79*********855889999********765555555554554444444433.3344449*********************9988764 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.3
    PF12542.3  30 KkridkllekkdeeeakkkskeeektkaaqeanserdtarklreD 74 
                  K+++ ++l+++d++ +++k+++++++k+++e +++r++++++++D
  MMETSP0890-20130614|29501_1 161 KQSLADELLEYDQQRRARKENRKAAKKKKKE-KKKRKKKKHYHSD 204
                  4566667777888887777777766555555.7777777777665 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.35
    PF12542.3  25 eyllGKkridkllekkdeeeakkksk 50 
                  + ll +  +d +  +++ +e+++  +
  MMETSP0890-20130614|29501_1 279 QRLLTEMATDGQAHEQRRQERMRHHR 304
                  33333334444444444444443333 PP

>> PF10197.4  N-terminal domain of CBF1 interacting co-repressor CIR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   7.9   1.3e-14   5.9e-11       2      37 .]       8      43 ..       7      43 .. 0.99
   2 ?   -7.4   9.2         3   1.4e+04      15      33 ..     179     197 ..     172     200 .. 0.66
   3 ?    2.3   0.6     0.035   1.6e+02      21      34 ..     291     304 ..     289     306 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.3e-14
    PF10197.4  2 WHPgllkNqekVWkaEQkaleEqkkieerrkeieeE 37
                 WH  ++kN+ekVW aE+k++eE kk+ e+ k+i+eE
  MMETSP0890-20130614|29501_1  8 WHVTTVKNVEKVWLAEKKEEEEAKKLAELEKQIKEE 43
                 ***********************************9 PP

  == domain 2    score: -7.4 bits;  conditional E-value: 3
    PF10197.4  15 kaEQkaleEqkkieerrke 33 
                  k+  ka++++kk++++rk+
  MMETSP0890-20130614|29501_1 179 KENRKAAKKKKKEKKKRKK 197
                  5555677777777777764 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.035
    PF10197.4  21 leEqkkieerrkei 34 
                  ++Eq+++e +r+ +
  MMETSP0890-20130614|29501_1 291 AHEQRRQERMRHHR 304
                  79******999866 PP

>> PF07994.7  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3      0.83   3.8e+03     121     140 ..      26      45 ..      10      51 .. 0.49
   2 ?   10.7   0.5   5.3e-05      0.24      24     142 ..      63     192 ..      56     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.83
                  ---HHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
    PF07994.7 121 ektkleevekiredirefkk 140
                  e+++++++ +++++i+e+++
  MMETSP0890-20130614|29501_1  26 EEEEAKKLAELEKQIKEERE 45 
                  33444444444445544444 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.3e-05
                  HTT-EE--.......--HHHHGEEE..B..EEECCGTSTTTSGGGEEEE-...--SS-SSHHHHHHHHTTS-HHHHHHHHHHHC.-B---G-GGSTCCGTTT--SBS-...---HHHHHHHHHHHHHHHHHHC CS
                  xxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
    PF07994.7  24 kkklswet.......GsvtqlstirlGeevyvpfkslvplvnpddivvgg...wDiskkklgealseakvldpnlqeklkpdle.ksvyykkdfiavnqgerldnvlk...ektkleevekiredirefkken 142
                  k+kl+w++        s  ++++ +lG+++yvp  +  +l   +d+  +g   +D ++++++e+ ++++  +    ++ ++ +    v ++  +++  +++ +d +l+   +   +   ++ r+  ++ kke+
  MMETSP0890-20130614|29501_1  63 KQKLEWMYegpgsaiASAAAAEEYKLGKKAYVPTTAKTELSRLEDKSAAGstwFDAKSNNANEQFVRVNEDPLYKMRQSEKRVReTTVLKNPLAMKRIKQSLADELLEydqQ---RRARKENRKAAKKKKKEK 192
                  6778888888855555666778899*********************99999999*************999999988888888885555555577777788889999995432...333334444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2206  (0.161352); expected 273.4 (0.02)
Passed bias filter:                      427  (0.0312317); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.42s 00:00:01.40 Elapsed: 00:00:01.12
# Mc/sec: 793.79
//
Query:       MMETSP0890-20130614|29506_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-06   27.2   0.2    3.5e-05   23.8   0.1    2.1  1  PF13519.1 von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   2.5e-09   3.5e-05       4     119 ..      73     213 ..      71     226 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.5e-09
    PF13519.1   4 lvlDvSgSMnaedv.............sptrldaakaal...kdlldel.pgdrvglvafsgsa....elvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad......grraaivlvtDGednssdieaa 119
                  +++D+SgSM+  d+             s +r++++ +++   +++  el    ++ l +   sa     +++   ++ + l++ +++l+ + +p+ggt+l  a+ + +  +++++      g raa+++ +DGe++++d++aa
  MMETSP0890-20130614|29506_1  73 WIVDNSGSMSLGDGhrltssgkreglvSCSRWEELCESIlfiAKVAIELeAPTEFRLLNPPLSAgisqCVRVGYGNNVNELRQ-IDALT-KSQPAGGTPLCTAIRQVILDIQSRQdflastGLRAAVIIASDGEASDGDVAAA 213
                  58999999988888777777777777777799998888844433333441466888888877762221234445677777776.99999.68*******************999999999999***********998877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.73
# Mc/sec: 1158.79
//
Query:       MMETSP0890-20130614|29505_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.3   4.2      0.038   13.3   2.9    1.5  1  PF08751.6 TrwC relaxase


Domain annotation for each model (and alignments):
>> PF08751.6  TrwC relaxase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.9   2.8e-06     0.038     224     295 ..     367     434 ..     349     436 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-06
                  -EEETTS-HHHHGGG-HHHHHHHHHHHH---TS--HHHHHHHHHHT------S.-HHHHHHHHHHHHHC--- CS
    PF08751.6 224 vfeikgvpeelieafSkRsaqieealaekgkedataaekqaAalatReaKeeplsraelrekwreeakelgf 295
                  v+  +g  +++  ++S+Rs++i ++ a k   ++  +++q+ a + R++K  p++ +elr+ w+e+ +e  +
  MMETSP0890-20130614|29505_1 367 VRIRRGAGTDAQPRISTRSKAIAKRDALKI--NEWSTQSQVLAVRKRDKK--PMTSEELRAYWEERKDEKHW 434
                  55556777888899*********9999655..555566677777777777..889***********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:00.91
# Mc/sec: 1274.55
//
Query:       MMETSP0890-20130614|29503_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-41  141.4   0.1    8.8e-34  116.7   0.1    2.6  2  PF07724.9  AAA domain (Cdc48 subfamily)
    1.8e-13   50.7   0.2    1.2e-05   25.3   0.0    2.5  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    2.2e-09   36.9   0.4    8.1e-09   35.1   0.3    2.0  1  PF10431.4  C-terminal, D2-small domain, of ClpB protein
    7.7e-08   32.0   0.3    4.4e-05   23.1   0.0    2.7  2  PF07728.9  AAA domain (dynein-related subfamily)
    3.3e-05   24.5   0.0    8.1e-05   23.2   0.0    1.8  1  PF13207.1  AAA domain
    0.00034   19.7   0.1     0.0021   17.1   0.0    2.3  3  PF01078.16 Magnesium chelatase, subunit ChlI
    0.00034   19.6   0.4    0.00077   18.5   0.0    1.9  2  PF06414.7  Zeta toxin
    0.00039   20.4   1.6     0.0051   16.7   0.1    3.0  2  PF13401.1  AAA domain
    0.00097   19.3   0.0     0.0025   18.0   0.0    1.7  1  PF13238.1  AAA domain
      0.002   16.8   0.3      0.041   12.5   0.0    2.2  2  PF00493.18 MCM2/3/5 family
     0.0021   17.8   0.1       0.25   11.1   0.0    2.5  2  PF13173.1  AAA domain
     0.0024   17.2   0.0       0.03   13.6   0.0    2.4  2  PF00158.21 Sigma-54 interaction domain
     0.0024   18.1   4.6     0.0025   18.1   0.2    2.6  2  PF13191.1  AAA ATPase domain
     0.0026   16.4   0.0     0.0063   15.1   0.0    1.6  1  PF06068.8  TIP49 C-terminus
     0.0059   16.3   0.0      0.014   15.1   0.0    1.7  1  PF13671.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.1   0.1      0.033   13.5   0.0    1.8  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation
      0.016   14.6   0.0      0.027   13.8   0.0    1.4  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain
      0.036   13.5   0.0       0.16   11.5   0.0    2.1  1  PF07931.7  Chloramphenicol phosphotransferase-like protein
      0.042   13.6   0.7       0.14   11.9   0.0    2.3  2  PF13521.1  AAA domain
      0.055   12.7   0.0       0.13   11.5   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
      0.067   12.5   0.0       0.44    9.8   0.0    2.2  2  PF00270.24 DEAD/DEAH box helicase
      0.084   11.4   0.1      0.092   11.3   0.1    1.2  1  PF00503.15 G-protein alpha subunit


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.8e-07   0.00011       5      57 ..     120     172 ..     117     184 .. 0.89
   2 !  116.7   0.1   1.4e-36   8.8e-34      29     171 .]     272     393 ..     243     393 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.8e-07
                  -EEEE-------HHHHHHHHHHTT-....--EEEEGGG---....----THHHHHHH CS
    PF07724.9   5 silllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrli 57 
                  +il++gptg+Gkte+a+ l++l ++    ++i ++a++++e    + +v++++  l 
  MMETSP0890-20130614|29503_1 120 NILMIGPTGCGKTEIARRLSKLAQA----PFIKVEATKFTEvgfhGRDVDQIIRDLV 172
                  89*********************96....************9999999999988776 PP

  == domain 2    score: 116.7 bits;  conditional E-value: 1.4e-36
                  -......--EEEEGGG-------THHHHHHHHHTTT-HHHHT---EEEETGGG----.------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT-----EE CS
    PF07724.9  29 v..kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEllgRlpei 171
                     +++k++ + +a+ l+ee e+e+l +   +++++++++ee+Giv++DEidKi ++ +  gad S egVqrdLL+++eg+ +++k+g +++t++ilfI++gaf+++k+sd                       l +El+gRlp++
  MMETSP0890-20130614|29503_1 272 RsnSERKRMPIREARPLIEEVELEKLMDGIDIQREAIQAVEESGIVFIDEIDKIVNSgDYRGADASAEGVQRDLLPLIEGSAISTKYG-NINTDYILFIASGAFHQAKPSD-----------------------LLAELQGRLPIR 393
                  1557899*********************************************************************************.**********************.......................999999999985 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     2e-08   1.2e-05       1      53 [.     121     171 ..     121     188 .. 0.87
   2 !   22.9   0.0   1.1e-07   6.9e-05      47     127 ..     305     393 ..     288     398 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2e-08
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHH CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkea 53 
                  +l++Gp G+GKT +a+ + k ++++f+++++++++   vg   +++ ++++++
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFT--EVGFHGRDVDQIIRDL 171
                  699********************************..6788888888877765 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.1e-07
                  HHHHHHHHHTS-SEEEEEETGGGC-HHH.SS..TTHCHHHHHHHHHHHHHTTTT.......S.TEEEEEE-SS....GGGS-HHHHHTTSCCE CS
   PF00004.24  47 relfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkkk.......eskvivigatnr....pdkldpallrgRfdrk 127
                  re +++++e     i+fiDEid++++s   ++++ ++e v+  Ll+ ++g   +       ++ +++i+ +      p++l  +l  gR+ ++
  MMETSP0890-20130614|29503_1 305 REAIQAVEE---SGIVFIDEIDKIVNSGdYRGADASAEGVQRDLLPLIEGSAIStkygninTDYILFIASGAFhqakPSDLLAELQ-GRLPIR 393
                  445554443...38**************99999*****************999888888864445566555443223333333333.565555 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.3   1.3e-11   8.1e-09       1      63 [.     399     470 ..     399     480 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.3e-11
                  --HHHHHHHHHH....HHHHHHHHHHTTT-EEEE-HHHHHHHHC--.....--TT---TTHHHHHHHHTHHH CS
    PF10431.4   1 LskeelkkIvdl....qlkklekrlaergveleltdealdalaekg.....ydpeyGARpLrriiereiedp 63 
                  L++ ++++I+++     l+++++ la ++v+le+td+a++++a+ +     + ++ GAR L ++ier +e++
  MMETSP0890-20130614|29503_1 399 LTEADMVRILTEpqanLLQQQRALLATEHVQLEFTDDAVNEIARVAslanrTIENIGARRLHTCIERIMEEV 470
                  899**********99777777777788*****************99888888999**************976 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.1e-08   4.4e-05       1      37 [.     120     156 ..     120     160 .. 0.94
   2 ?    6.2   0.1     0.012       7.2      56      77 ..     304     325 ..     284     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 7.1e-08
                  EEEEE------HHHHHHHGGGGBS--EEEEE--TT-- CS
    PF07728.9   1 dvlLvGppGtgKselaerlaealnreveyvqltrdtt 37 
                  ++l++Gp+G+gK+e+a+rl+++ ++++  v  t++t+
  MMETSP0890-20130614|29503_1 120 NILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFTE 156
                  689************************9999999986 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.012
                  .--------G-SEEEEESGGG- CS
    PF07728.9  56 dsplvraaregeilvlDEvera 77 
                  + ++ +a++e+ i+++DE++++
  MMETSP0890-20130614|29503_1 304 QREAIQAVEESGIVFIDEIDKI 325
                  456778999***********97 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.3e-07   8.1e-05       2      66 ..     121     192 ..     120     279 .. 0.62

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.3e-07
                  E--B--TT---HHHHHHHHHHSTEEEEEGGG..B--GGGS-B--.---B--.....SSGGGB-HHHHHHHH.. CS
    PF13207.1   2 iaitGppGsGKsTlakeLaerlglpvlsldd..llreeglkeld.dgeres.....kdadadllaaildglaa 66 
                  i+ +Gp+G+GK+ +a++L++    p +  ++  +  e g+ ++d d++ +      ++   ++ a++l ++a+
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLAQAPFIKVEAtkF-TEVGFHGRDvDQIIRDlvevsMILTRKKKAEELRPEAK 192
                  899*****************99999988888544.77777777755554221222234444444444444433 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   1.9e+03       4      19 ..      84      99 ..      83     109 .. 0.86
   2 !   17.1   0.0   3.3e-06    0.0021      24      46 ..     120     142 ..     116     164 .. 0.83
   3 ?   -2.3   0.0       2.8   1.8e+03     105     116 ..     312     323 ..     270     327 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3
   PF01078.16  4 dvkGqeeakraleiaa 19
                 +++Gq  ak+a+ ia 
  MMETSP0890-20130614|29503_1 84 HIVGQGPAKKAVAIAL 99
                 699**********996 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3.3e-06
   PF01078.16  24 nlllvGppGsGKtmlakrlpsll 46 
                  n+l++Gp G+GKt +a+rl++l 
  MMETSP0890-20130614|29503_1 120 NILMIGPTGCGKTEIARRLSKLA 142
                  9******************9985 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.8
   PF01078.16 105 ahnGvLfLDElp 116
                   + G++f+DE+ 
  MMETSP0890-20130614|29503_1 312 EESGIVFIDEID 323
                  457899999986 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06   0.00077      11      54 ..     113     155 ..     104     224 .. 0.82
   2 ?   -3.2   0.1       5.3   3.3e+03     142     187 ..     261     304 ..     245     314 .. 0.57

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.2e-06
    PF06414.7  11 peqekpkavllgGqpGAGKtslaellleelaagnivridaDelr 54 
                  +++  pk +l+ G++G+GKt++a++l + + +  +++++a ++ 
  MMETSP0890-20130614|29503_1 113 KQEIVPKNILMIGPTGCGKTEIARRLSKLA-QAPFIKVEATKFT 155
                  46678**********************998.9999999988775 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 5.3
    PF06414.7 142 RyeeelaekgegRrvpkevhdeayeglpesvealeaekavdrirvy 187
                  Ry ++ a++  gR  + e      ++++  +e++e ek++d i + 
  MMETSP0890-20130614|29503_1 261 RYSQQ-AANTRGRSNS-ERKRMPIREARPLIEEVELEKLMDGIDIQ 304
                  66666.2222344433.33333344455556666777776666664 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   8.3e-06    0.0051       7      50 ..     121     163 ..     115     346 .. 0.88
   2 ?   -1.2   0.1         3   1.9e+03      80     108 ..     412     441 ..     357     463 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.3e-06
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast.......s 50 
                  ++ +G++G+GKT  +rrl + +        +a++++vea++ t       +
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLA--------QAPFIKVEATKFTevgfhgrD 163
                  6789****************99........999999999998844443333 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3
    PF13401.1  80 qealrrrrtrlliiDEaqr.Lseealeelr 108
                  q  l ++++ ll    +q  ++++a++e+ 
  MMETSP0890-20130614|29503_1 412 QANLLQQQRALLATEHVQLeFTDDAVNEIA 441
                  222222222466666666655666666663 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-06    0.0025       1      63 [.     121     203 ..     121     234 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4e-06
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl......................gdvlrdlakengleeevddkidtkeskeldedkldelldkl 63 
                  Il  G++G+GKt++a++L++                         +++rdl+  + + +   +   ++   e+++ + +++ld+l
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLAqapfikveatkftevgfhgrdvDQIIRDLVEVSMILTRKKKA--EELRPEAKIAVENRILDTL 203
                  6778**************9987778888888888888777777666666666555555555555..4444455555555555555 PP

>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.5e-05     0.041      16      83 ..      75     144 ..      64     161 .. 0.82
   2 ?    2.0   0.1      0.11        67     121     134 ..     313     326 ..     309     331 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.5e-05
   PF00493.18  16 eklvksiapsiyghedvkkaillqlfggvkkkledktklrgdi...nvllvGdpgtaKSqlLkyveklapr 83 
                  +++v+ +  +i+g+   kka++++l    +++l    +l+ +i   n+l++G  g++K+++ + ++kla+ 
  MMETSP0890-20130614|29503_1  75 KAIVEELDKHIVGQGPAKKAVAIALRNRWRRQLLG-DELKQEIvpkNILMIGPTGCGKTEIARRLSKLAQA 144
                  67999999*******************99988755.5666666566*****************99999875 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.11
   PF00493.18 121 dkGvcciDefdkmk 134
                  + G++ iDe+dk+ 
  MMETSP0890-20130614|29503_1 313 ESGIVFIDEIDKIV 326
                  68**********85 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0004      0.25       3     102 ..     119     211 ..     117     224 .. 0.67
   2 ?    4.2   0.0     0.055        34      52      74 ..     305     350 ..     274     402 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0004
    PF13173.1   3 kilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpellelfleklkekkkylflDEiqevpewedalkslvddgrnldviltGsnskll 102
                  k ++++Gp ++GKt ++++l k       ++ ++  +  +  ++  +++++++++    +  ++l   ++++e++   k  v+++  +   ltGsn+   
  MMETSP0890-20130614|29503_1 119 KNILMIGPTGCGKTEIARRLSKLAQ--APFIKVEATKFTEVGFHGRDVDQIIRDLV---EVSMILTRKKKAEELRPEAKIAVENR--ILDTLTGSNAART 211
                  78999************99974433..55555555554443333333667777762...23478888888888888888888866..6667888887655 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.055
    PF13173.1  52 elfleklkekkkylflDEiqev........................p 74 
                  ++ ++   e++ ++f+DEi ++                        +
  MMETSP0890-20130614|29503_1 305 REAIQA-VEESGIVFIDEIDKIvnsgdyrgadasaegvqrdllpliE 350
                  333332.336789*******996666665555555555544444442 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.8e-05      0.03      22      61 ..     118     154 ..     103     158 .. 0.83
   2 ?    0.2   0.0      0.63   3.9e+02      93     105 ..     313     325 ..     302     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.8e-05
                  -S-EEEE-------HHHHHHHHHTSTTTTS--EEEETTTS CS
   PF00158.21  22 dltvlitGesGtGKellAraiheaskrkkkpfvavncaai 61 
                  + ++l+ G +G+GK+ +Ar +   sk +++pf++v+ +++
  MMETSP0890-20130614|29503_1 118 PKNILMIGPTGCGKTEIARRL---SKLAQAPFIKVEATKF 154
                  579***************987...5566799999998765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.63
                  ----EEEET---- CS
   PF00158.21  93 dgGtLfLDeigel 105
                  + G++f+Dei ++
  MMETSP0890-20130614|29503_1 313 ESGIVFIDEIDKI 325
                  679*******987 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2     4e-06    0.0025      24      81 ..     118     174 ..      84     350 .. 0.77
   2 ?    1.0   0.5       0.7   4.4e+02      89     128 ..     384     433 ..     330     488 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4e-06
    PF13191.1  24 p.lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn..lpysaiiqalrellrq 81 
                  p ++l +Gp G+GK+ ++r+l k + +    ++a kf +++++       ++q++r+l++ 
  MMETSP0890-20130614|29503_1 118 PkNILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFTEVGFHgrD----VDQIIRDLVEV 174
                  3599*************************************99541....34446666653 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.7
    PF13191.1  89 elggwreallaalga..........lipelegiiglqalvalldaalart 128
                  ++ + r +++  l a           +p++++++ + al+a+ + +l+ t
  MMETSP0890-20130614|29503_1 384 AELQGRLPIRVELQAlteadmvrilTEPQANLLQQQRALLATEHVQLEFT 433
                  22222222222222233335555555555555555555555555554443 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05    0.0063      17      88 ..      76     154 ..      63     188 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-05
    PF06068.8  17 geaekeeeglvGqkkaReaagvive......lik...ekklaGravLlaGppgtGktalaiaiskelgedvpfvalsgsev 88 
                   ++e+ ++ +vGq  a++a+++ ++      l+    ++++  + +L+ Gp+g Gkt +a  +sk    + pf+++ ++++
  MMETSP0890-20130614|29503_1  76 AIVEELDKHIVGQGPAKKAVAIALRnrwrrqLLGdelKQEIVPKNILMIGPTGCGKTEIARRLSKLA--QAPFIKVEATKF 154
                  5677888999*********999874222222443222356788******************999853..689999998875 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.3e-05     0.014       2      33 ..     121     177 ..     121     231 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.3e-05
    PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqdt.........................l 33 
                  +l++G+ G+GK+  a+rl k  ++ ++   +                         +
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLAQAPFIKVEAtkftevgfhgrdvdqiirdlvevsmI 177
                  79****************988888888777755666666666666665555555553 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.3e-05     0.033       2      25 ..     119     142 ..     118     159 .. 0.78
   2 ?   -3.3   0.0       8.3   5.2e+03     110     137 ..     427     454 ..     399     457 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.3e-05
    PF10662.4   2 kkilliGkvgaGKTtLtqalkgee 25 
                  k+il+iG++g+GKT ++++l++ +
  MMETSP0890-20130614|29503_1 119 KNILMIGPTGCGKTEIARRLSKLA 142
                  78******************9853 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 8.3
    PF10662.4 110 lveelLkaaGaekifevsavekegieel 137
                   v+ +++   +++i +v ++ +  ie++
  MMETSP0890-20130614|29503_1 427 HVQLEFTDDAVNEIARVASLANRTIENI 454
                  4444455556777777777777777665 PP

>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.3e-05     0.027      18      64 ..     121     180 ..     117     273 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx........x RF
   PF00006.20  18 tlipGafgcGktvisqslsknsnsdai.....iyvgiGergnevaevleef........r 64 
                  +l++G+ gcGkt i+ +lsk +++  i      ++ +G +g++v ++++++        r
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLAQAPFIkveatKFTEVGFHGRDVDQIIRDLvevsmiltR 180
                  7899******************66666555558999***********9999544444441 PP

>> PF07931.7  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00025      0.16       4      59 ..     121     194 ..     119     227 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00025
                  EEE-----------HHHHHHHSSS-EEEE--HHHHHH.S-GGGGT.................-----B------ CS
    PF07931.7   4 ilLnGgsssGKsslaralqevldepwlhlgvDafvea.lppkrqd.................eadglefetele 59 
                  il+ G +  GK+ +ar l +++++p+++++  +f+e     + +d                 +a++l++e++  
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFTEVgFHGRDVDqiirdlvevsmiltrkkKAEELRPEAKIA 194
                  78889999**************************9973433333356666666666666665556666655555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.14       2      38 ..     121     158 ..     120     215 .. 0.67
   2 ?   -1.8   0.1       3.8   2.4e+03      33      33 ..     439     439 ..     396     491 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00023
    PF13521.1   2 ivitGgpstGKTtlleaLaar.gypvvpEvarevleek 38 
                  i ++G+ ++GKT ++++L+++ + p ++  a++++e +
  MMETSP0890-20130614|29503_1 121 ILMIGPTGCGKTEIARRLSKLaQAPFIKVEATKFTEVG 158
                  889***************98766766655555555444 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.8
    PF13521.1  33 e 33 
                  e
  MMETSP0890-20130614|29503_1 439 E 439
                  1 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.13      48      69 ..     119     140 ..     110     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.0002
   PF01695.12  48 enlvllGpsGvGKthlAialgv 69 
                  +n++++Gp+G GKt +A  l  
  MMETSP0890-20130614|29503_1 119 KNILMIGPTGCGKTEIARRLSK 140
                  7**************9987765 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00071      0.44      15      31 ..     119     135 ..     102     153 .. 0.86
   2 ?   -0.6   0.0       1.2   7.2e+02     120     138 ..     309     328 ..     256     345 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00071
                  -EEEEEC-TT---HHHH CS
                  xxxxxxxxxxxxxxxxx RF
   PF00270.24  15 gdvlvaaeTGsGKTlaf 31 
                  +++l+ ++TG GKT+++
  MMETSP0890-20130614|29503_1 119 KNILMIGPTGCGKTEIA 135
                  89************987 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.2
                  HTTT.EEEEEECTHHHHHCT CS
                  xxxx.xxxxxxxxxxxxxxx RF
   PF00270.24 120 nlsq.vrllVlDEadrllsq 138
                  +  +  +++ +DE+d++ + 
  MMETSP0890-20130614|29503_1 309 QAVEeSGIVFIDEIDKIVNS 328
                  33333778889999988775 PP

>> PF00503.15  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00015     0.092      51     149 ..     111     251 ..      34     445 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
                  XXXXXXXEEEEEEEXXXXXXXHHHHHHHHHHHXXXXXXXXHHHHHHHHHH.....HHHHHHHHHHXXXHHHHHHXSS..XHHHHHXXXHHHHXXXXXSSXX........................................X CS
   PF00503.15  51 ekkkkkkevklLlLGqgeSGKsTilkqfkllykpgfsreeraswraviyl.....nivrsiktilealekleielslskseeneeqleklksrldpldeieal......................................v 149
                  e k++  + ++L++G +++GK+ i + +  l +  f + e  ++++v ++     +i+r +  +   l++ ++ ++l+ +e + + ++++ + l++++ ++++                                       
  MMETSP0890-20130614|29503_1 111 ELKQEIVPKNILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFTEVGFHgrdvdQIIRDLVEVSMILTRKKKAEELR-PEAKIAVENRILDTLTGSNAARTTqssfrdmlrkgvlddrqidvdlpndrsggqgviqvdtsN 251
                  4444555669***********************************998874444456666666666666666666555.556666666666666666665554555555555555555555555555555555555544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        73  (0.00533938); expected 13.7 (0.001)
Passed Fwd filter:                        22  (0.00160913); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.94
# Mc/sec: 1295.05
//
Query:       MMETSP0890-20130614|29508_1  [L=1136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-20   70.9  28.2    2.7e-06   27.1   2.3    7.3  7  PF14312.1 FG-GAP repeat
  ------ inclusion threshold ------
      0.037   13.8   0.1      0.037   13.8   0.1    2.9  3  PF13854.1 Kelch motif
      0.055   13.9   0.8       0.13   12.7   0.5    1.5  1  PF08589.5 Fungal protein of unknown function (DUF1770)
        2.5    7.3   7.5         16    4.7   5.5    2.0  2  PF10329.4 Region of unknown function (DUF2417)


Domain annotation for each model (and alignments):
>> PF14312.1  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.7   3.4e-07    0.0012       5      36 ..      41      70 ..      38      80 .. 0.74
   2 !   10.9   0.0   9.1e-05      0.31      27      49 .]     116     139 ..      98     139 .. 0.86
   3 !    6.5   0.0    0.0021       7.3       3      49 .]     148     196 ..     146     196 .. 0.79
   4 !   27.1   2.3   7.9e-10   2.7e-06       6      49 .]     209     249 ..     204     249 .. 0.91
   5 ?   -2.9   0.0       1.9   6.4e+03      22      38 ..     275     294 ..     273     300 .. 0.68
   6 !    7.2   0.0    0.0013       4.5       3      32 ..     311     341 ..     309     355 .. 0.71
   7 !   14.0   0.2   9.8e-06     0.033      15      49 .]     380     414 ..     376     414 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.4e-07
    PF14312.1  5 aKLtAsDgaagDyFGssVaisgdtavVGAygd 36
                  KLtAsD +   +FGssVa s d + V+    
  MMETSP0890-20130614|29508_1 41 TKLTASDTS--SWFGSSVAASSDVVAVSTTSF 70
                 7******86..5***********988887643 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 9.1e-05
    PF14312.1  27 dt.avVGAygdddngtnsGsaYvf 49 
                  +  ++V Ay+d++  ++sG+ Yvf
  MMETSP0890-20130614|29508_1 116 NLlLIVTAYNDNGATDSSGAIYVF 139
                  5559*********88889*****9 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0021
    PF14312.1   3 eqaKLtAsDgaagDyFGssVai...sgdtavV..GAygdddngtnsGsaYvf 49 
                  e +KL+  D +a+  F + Va    s d +++  GA+ +d+   +sG +Yv+
  MMETSP0890-20130614|29508_1 148 EIQKLLSGDQEATGIFPTHVATartSSDSVIIygGAPLNDN---TSGQVYVY 196
                  77999999999999999999972224556887889999999...58*****8 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 7.9e-10
    PF14312.1   6 KLtAsDgaagDyFGssVaisgdtavVGAygddd.ngtnsGsaYvf 49 
                   L AsD+a +D FG  +a  gd +++ A+g+dd      G++Y f
  MMETSP0890-20130614|29508_1 209 ILKASDAADNDLFGLGIAAYGDAVLIAAPGQDDfV----GAVYAF 249
                  599******************************44....****98 PP

  == domain 5    score: -2.9 bits;  conditional E-value: 1.9
    PF14312.1  22 VaisgdtavVGAy...gddd 38 
                   a+  ++av+ A+   +d+d
  MMETSP0890-20130614|29508_1 275 LAMTATYAVICAPsqtYDSD 294
                  67888779999995555554 PP

  == domain 6    score: 7.2 bits;  conditional E-value: 0.0013
    PF14312.1   3 eqaKLtAsDga.agDyFGssVaisgdtavVG 32 
                    + L+ sD+  +g +FG  V+i++++++++
  MMETSP0890-20130614|29508_1 311 YSNQLLLSDALyQGTEFGDRVSIEENNILIS 341
                  5566666776437899***********8886 PP

  == domain 7    score: 14.0 bits;  conditional E-value: 9.8e-06
    PF14312.1  15 gDyFGssVaisgdtavVGAygdddngtnsGsaYvf 49 
                   D+FG + a+sg+ a V+A+++d +  +sG + ++
  MMETSP0890-20130614|29508_1 380 ADNFGAALALSGEIAFVSAPYHDTDLIDSGTVFIY 414
                  59**********99*********987889999887 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.61   2.1e+03      24      39 ..      69      82 ..      51      84 .. 0.68
   2 ?   13.8   0.1   1.1e-05     0.037      12      40 ..     172     199 ..     165     201 .. 0.79
   3 ?   -3.6   0.2       3.1   1.1e+04      17      22 ..     713     718 ..     712     719 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.61
    PF13854.1 24 sgnddsvsddvyvLsl 39
                 s   ++v + vy+++ 
  MMETSP0890-20130614|29508_1 69 S--FTGVNNGVYIYTK 82
                 3..5778899999986 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.1e-05
    PF13854.1  12 vvsgniylyGGksgnddsvsddvyvLslp 40 
                  + s+++++yGG  + +d+ s +vyv+   
  MMETSP0890-20130614|29508_1 172 TSSDSVIIYGGAPL-NDNTSGQVYVYRSD 199
                  4489*********9.***********765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3.1
    PF13854.1  17 iylyGG 22 
                  i+lyGG
  MMETSP0890-20130614|29508_1 713 IILYGG 718
                  99***9 PP

>> PF08589.5  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   3.7e-05      0.13       3      75 ..    1040    1112 ..    1023    1113 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.7e-05
    PF08589.5    3 tiktssissrepsplrdvnestaasess...ssslsddqskeeddsvn.....sdveeaelptevikpssrrtkhtlPPlP 75  
                   t+ +s+i++        vn +++ + ++   +ssl++++s+ e+ s++     + v  +e  +++ ++++  t+ t+PP P
  MMETSP0890-20130614|29508_1 1040 TMTPSTIHR--------VNLEVDDNTKQsiaTSSLPQNNSSTEASSIDqeavlEMVDRDEKGEDAAHEIPPTTHTTMPPPP 1112
                   444455555........55554333333334666777777777777775444355555666667********99*****99 PP

>> PF10329.4  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.4   1.4e+03     183     196 ..     621     633 ..     579     650 .. 0.51
   2 ?    4.7   5.5    0.0046        16      52     139 ..     835     919 ..     829     922 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.4
    PF10329.4 183 lrtvikllllivvi 196
                  + tvi ++++++++
  MMETSP0890-20130614|29508_1 621 I-TVILVIIAVIIA 633
                  1.111112222221 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0046
    PF10329.4  52 wlvillisdFvslpglsnrgssFldlalillsivanlltllflgvpskldrvlnvvlavLllidlliillvkylrqriglvgiasvlW 139
                  ++ i lis F  l +    +s F++l l  ++ + n + llflg+ +      ++ +a  l+id+l++l+v  ++   ++  ++  lW
  MMETSP0890-20130614|29508_1 835 LFCIALISSFPLL-MRPYVNSVFNSLEL--VAKLGNTIVLLFLGIAATNTNHDQALIATALIIDVLVMLIVVGVQVICAVAVLIHALW 919
                  4778899999766.34445677888765..8999*************************************99988888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.55u 0.41s 00:00:01.96 Elapsed: 00:00:01.29
# Mc/sec: 2110.28
//
Query:       MMETSP0890-20130614|29511_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-30  103.8   2.3    5.2e-20   71.7   0.1    3.0  2  PF05021.10 NPL4 family
     0.0099   16.0   0.0      0.026   14.6   0.0    1.7  1  PF11543.3  Nuclear pore localisation protein NPL4
  ------ inclusion threshold ------
      0.096   11.8   0.0       0.31   10.2   0.0    1.9  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF05021.10  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   1.1e-10     5e-07       1      47 [.     195     237 ..     195     246 .. 0.86
   2 !   71.7   0.1   1.1e-23   5.2e-20      40     283 ..     272     479 ..     263     489 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.1e-10
   PF05021.10   1 RfGflyGryeedekvplGikavveaIYEPpQedeedgvtl.ledeeek 47 
                  R+GflyG+ +ede     +k+ ve++YEP+Q + e g+ + l deee+
  MMETSP0890-20130614|29511_1 195 RCGFLYGNWDEDE-----MKVKVEFVYEPEQRSDEHGIAVlLADEEEE 237
                  99***********.....9*******************9976664443 PP

  == domain 2    score: 71.7 bits;  conditional E-value: 1.1e-23
   PF05021.10  40 lledeeekkvdeiakklGLervGvIftdltdagakdgtvlckrhkdsyfLsslEvitaAklqlkhpkatkysetgefgskfvtcvisgd.eegeieieayqvSdqaeaLvkadiiepstdpsvlyvresskkryvpevfykkkneYgkevkenakP.fpveyllVtvthgfpkepkplFksskFpieNRealgesqdlsalkkylksskkkeslerlsdFhlLlylakl.eild.keevkllleavke 283
                  +  +ee + v++ia++l L+rvG++f +                ++ ++ s  E i+aA  ql+         +g   + fvt+ ++ d e++e ++eayqvS+q++ +  ++ +    ++  +   +      +  v+          v+ +  P ++ +++l +v+ +  ++++++Fk+s+Fp e R      q+ ++lk+ ++ ++  +  ++l+dF l+l+la++ +i+d ++ + +l++a+k+
  MMETSP0890-20130614|29511_1 272 VAATEEINIVEAIAEALALRRVGFVFAHPP-------------REKGFVFSGAEAIRAAYQQLEA-------ADGVNKTPFVTVKVTVDpESNESQFEAYQVSEQCMTMAAEGALGVDGNDLAACAVH-----PTFTVV----------VEGKPAPsVNANFFLCNVPVQ--QHDSQIFKHSTFPKEHRLL---PQTRDDLKSRIRGTSGISLTRALADFGLILFLASFpQIFDhSSFIPSLIQAIKH 479
                  566789999*******************88.............56899***************98.......689999*********976899**********************9888755555544.....122333..........444445669**********98..555668*************...9*********************************989***66678999999995 PP

>> PF11543.3  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.7e-06     0.026       4      77 ..       8      84 ..       5      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.7e-06
                 ----EEE-----EE----SS-....-HHHHHHHHHHH------------S-------SS----TTTTT---.----EE- CS
    PF11543.3  4 eiiiRvqSadGikRieiseks....tlktllekvaeelkfsnngfslylernkttelvssssksvkevklk.hGdmlyL 77
                  +i+R++ a G+ R+++ e+      l++ +  ++ ++++  +++ l  +   +++l  +++ ++++ kl+  G m++L
  MMETSP0890-20130614|29511_1  8 DMILRIRTATGTWRLDVGESPvnqlVLSEVKVMIESNFGVARERQTLCEDPAGKRLL--DDNLTLQKAKLNaNGAMVFL 84
                 79**************98764111157788888999*********************..9**********857999998 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.7e-05      0.31      19      58 ..      35      77 ..      32      86 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHHHTS-GGGEEEEE..---BE.TTTSBTTTTTT-T CS
   PF00240.18 19 selKekieekegipvdqqrLiy..sGkvL.eDdrtlseyniqd 58
                 se+K  ie+  g++ ++q L    +Gk+L +D+ tl+  +++ 
  MMETSP0890-20130614|29511_1 35 SEVKVMIESNFGVARERQTLCEdpAGKRLlDDNLTLQKAKLNA 77
                 89******************96337***********9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:00.86
# Mc/sec: 1390.44
//
Query:       MMETSP0890-20130614|29512_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 1038.42
//
Query:       MMETSP0890-20130614|29513_1  [L=1317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-14   52.8   0.0    8.7e-14   51.2   0.0    1.8  1  PF00270.24 DEAD/DEAH box helicase
    1.8e-08   34.3   2.4    1.9e-07   31.0   0.0    2.7  3  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.077   11.7   0.0       0.16   10.7   0.0    1.4  1  PF00437.15 Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   1.9e-17   8.7e-14       4     167 ..     375     535 ..     372     541 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 1.9e-17
                  HHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHH.....CCHHT...............TT.EEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx...............xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst.....gklnl...............sq.vrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 167
                  Q+++++++   ++ +v+a+T+sGKT++    +++  ++        ++l+v+Pt+ L+ q++  ++++++  + +v+l + + a +   +    ++ ++vvgTp  l + + +     g                   ++ +++ V+DE++ l+  + ++ l+++++ +    ++++++lSAT+ 
  MMETSP0890-20130614|29513_1 375 QKKVLRHVDARKSAIVCAPTSSGKTIISTYTCVN--YK--------RVLFVVPTEPLVWQVAAMFQRLLAG-SGQVALATNQLAYR-PSE----DKSKVVVGTPLALESALVKirgivG---EeaqakrwdyaqldggFDdFEYAVFDEVHALDG-DEGAALQRLIRYV----SCPTLALSATIG 535
                  899999999999***************9999987..43........9**********************98.56888888888755.333....3599********9999998666552...0344577888999999555**************.7777777777775....689*******97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.7     0.041   1.9e+02      64     124 ..     193     253 ..     186     278 .. 0.84
   2 !   31.0   0.0   4.1e-11   1.9e-07      22     182 ..     377     534 ..     316     536 .. 0.71
   3 ?   -4.2   0.2       2.6   1.2e+04     131     145 ..     791     805 ..     779     819 .. 0.42

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.041
   PF04851.10  64 eqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhk 124
                  +q +++ kk ++k+  +ek++  +++kd + + e+ +++ k++++k +   i+++++ l++
  MMETSP0890-20130614|29513_1 193 KQQKNKVKKPNKKEELIEKNKRDQEEKDIKADLEKLENAAKSCRSKAELGKIIFAAKCLTA 253
                  7999999999999999999999999999999999999999999999888877777777765 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 4.1e-11
   PF04851.10  22 e.....dekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esks......eslealldefdviiiDEaHrlsakkk..yreilefkkafllglTATp 182
                  +     d +k++++ ++T +GKT++++      ++++lf+vp++ l+ q    f++    +               ++   ++++++  + +++++++++ t   l++al +   +  e+ +      ++l+   d f++ ++DE+H l  ++    ++++++ +   l l+AT+
  MMETSP0890-20130614|29513_1 377 KvlrhvDARKSAIVCAPTSSGKTIISTY-TCVNYKRVLFVVPTEPLVWQVAAMFQRLLAGSG--------------QVALATNQLAY--RPSEDKSKVVVGTPLALESALVKIRGIVgEEAQakrwdyAQLDGGFDDFEYAVFDEVHALDGDEGaaLQRLIRYVSCPTLALSATI 534
                  033335567999***************5.4445569******************33322221..............22233334444..55567778888888888888776555555554467777778888888888*************95444444444444559999996 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 2.6
   PF04851.10 131 endeskseslealld 145
                  e++e+++e +e+l++
  MMETSP0890-20130614|29513_1 791 EAKEKQLEAQEKLKE 805
                  222222222222222 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.5e-05      0.16     115     150 ..     373     408 ..     330     412 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.5e-05
   PF00437.15 115 kklaevlrqavqargnilvsGgTgsGKttll.nalla 150
                  + +++vlr+   ar++ +v  +T+sGKt+++ +++++
  MMETSP0890-20130614|29513_1 373 AWQKKVLRHV-DARKSAIVCAPTSSGKTIIStYTCVN 408
                  6678888886.*****************976477665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1393  (0.101887); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.97u 0.42s 00:00:02.39 Elapsed: 00:00:01.22
# Mc/sec: 2586.89
//
Query:       MMETSP0890-20130614|29517_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-05   23.2   7.0     0.0024   17.8   4.8    2.2  1  PF08164.7 Apoptosis-antagonizing transcription factor, C-terminal
  ------ inclusion threshold ------
      0.034   14.1   0.3      0.048   13.6   0.2    1.3  1  PF14058.1 PcfK-like protein
      0.034   13.0   0.5      0.035   12.9   0.4    1.1  1  PF09848.4 Uncharacterized conserved protein (DUF2075)
       0.12   12.0   3.0       0.23   11.1   2.0    1.9  1  PF12494.3 Protein of unknown function (DUF3695)


Domain annotation for each model (and alignments):
>> PF08164.7  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   4.8   6.9e-07    0.0024       1      58 [.      37     118 ..      37     119 .] 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.9e-07
    PF08164.7   1 YqsLLkeliesksssssna.........................eseeavllelakkkkKkkknVDtkASKGRklryevhekl 58 
                  Y++ Lkel+es+  +++n+                         +s  + ll+ ++ ++ +kk+   + SKGR l++e h+k+
  MMETSP0890-20130614|29517_1  37 YRTQLKELLESRPRKKKNNsnafqaevydlalahfsngenkstlQS-RSRLLASSSIQTHTKKKKHHRESKGRTLKFEAHDKI 118
                  8899999999988887777788999999999999998877553222.5555666778899999999****************9 PP

>> PF14058.1  PcfK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.4e-05     0.048      49     116 ..      51     117 ..      40     119 .] 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
    PF14058.1  49 lkksgcnalsddevyswaveYydeddikaekpieckvtvnktielteeekkeakkeaekayqeeelak 116
                  +kk+++na++  evy++a+  + + + k   + + +   +  i+  +++kk++++++ +  + e   k
  MMETSP0890-20130614|29517_1  51 KKKNNSNAFQ-AEVYDLALAHFSNGENKSTLQSRSRLLASSSIQTHTKKKKHHRESKGRTLKFEAHDK 117
                  3677888886.79**********98888888999999999999*99999**99999988877776666 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4     1e-05     0.035     174     240 ..      40     104 ..       9     117 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1e-05
    PF09848.4 174 wvdalldkkkekakplssqedyeikvfddleelkkaikeknkesgrsrlvatydwerleekkkkkss 240
                   +++ll+ +  k+k+   ++ ++ +v+d + + +++ ++k++ + rsrl+a+++ + +++kkk + +
  MMETSP0890-20130614|29517_1  40 QLKELLESRPRKKKNN--SNAFQAEVYDLALAHFSNGENKSTLQSRSRLLASSSIQTHTKKKKHHRE 104
                  5788998888888887..8***********************************9999333333322 PP

>> PF12494.3  Protein of unknown function (DUF3695)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.0   6.7e-05      0.23      27      55 ..       8      32 ..       2     115 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.7e-05
    PF12494.3 27 sSsrrsaayrdvpkipkDsLDfqLqslYd 55
                 + s r  + r+ pk+p DsLDf+   +Yd
  MMETSP0890-20130614|29517_1  8 NDSERMRKRRH-PKNPDDSLDFE---RYD 32
                 55566666777.**********7...566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.78
# Mc/sec: 365.60
//
Query:       MMETSP0890-20130614|29514_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   40.9   0.2    2.2e-10   40.3   0.1    1.2  1  PF03031.13 NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> PF03031.13  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   1.6e-14   2.2e-10       5     146 ..      10     173 ..       6     178 .. 0.68

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.6e-14
   PF03031.13   5 LDLDetLvhsksekde.e..........e..ektkasvkkRPgldeFLkelska.yevviftasskeyadavldkldpkkklfkkrlyresctlengky.vKdLsll..grdlskvvivDdsprsfelq.pdnlipiepfygds.........dkdtellkllpfleal 146
                  LDLD+t++h+ + ++  e             ++  ++v++R g   F ++l+ka  +v+i t   +  ad+v+++l +  ++f++  +  + + ++ +   K+L+++  ++  s++ i+Ddsp ++++q ++ +i+ ++f  +           +d+ l + l +++++
  MMETSP0890-20130614|29514_1  10 LDLDHTILHMLRASEMpEnsgfaedvveFvhDEVVYKVALRIGTTSFVRALRKAdVTVIIVT--CNLVADKVMEALSKRCDVFQALEC--HIIESR-ERgAKSLEMIgvNSTDSRITIFDDSPSAWRFQdQEFIIHAKRFDAKTlaaaldaddTDDDLLDEELGYMSQM 173
                  9*********94444452467777776515689999999************75325555555..556**********98887733221..121112.2327******8867679***************6666677777877668888876532233344455554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.89
# Mc/sec: 920.85
//
Query:       MMETSP0890-20130614|29523_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-06   26.4   0.3    7.5e-06   25.5   0.2    1.5  1  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   5.5e-10   7.5e-06       3      39 .]      41      78 ..      39      78 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 5.5e-10
                 EEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  3 ckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39
                 + +++ gH    + +a++p+   +l+sgS+D +i++Wd
  MMETSP0890-20130614|29523_1 41 PDHICLGHAREGYGLAWNPHkAGILLSGSDDMNICVWD 78
                 668899*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.33s 00:00:00.66 Elapsed: 00:00:00.65
# Mc/sec: 342.86
//
Query:       MMETSP0890-20130614|29524_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   14.3   0.0        1.8    7.8   0.0    2.4  2  PF02230.11 Phospholipase/Carboxylesterase
       0.21   11.7   4.1       0.47   10.5   2.8    1.6  1  PF07941.6  Potassium channel Kv1.4 tandem inactivation domain


Domain annotation for each model (and alignments):
>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0038        26     121     148 ..       2      29 ..       1      40 [. 0.83
   2 ?    7.8   0.0   0.00027       1.8     152     212 ..      90     154 ..      78     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0038
   PF02230.11 121 ylaltspkplggivafsgalplnqkleq 148
                   +++ s+k+ +g + +sg+l + ++  +
  MMETSP0890-20130614|29524_1   2 NTVYRSNKKFAGCICLSGWLQILESDLE 29 
                  5789999*************98877655 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00027
   PF02230.11 152 kva.kipilqlHgeeDevvplalgkaakellktlln...kvelksyeglgHsilseelqdikkfl 212
                   ++ k+  + +Hg +D  v + + +++ +ll+++          +y  l+H + +++++d+ +fl
  MMETSP0890-20130614|29524_1  90 TCNnKTTLFWGHGLYDDKVLFEHFQRSIDLLQKKYFigaYPLISKYYTLAHTSHPDQIEDLTNFL 154
                  5666999*********99999999999999999876565455677777**************998 PP

>> PF07941.6  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.8   6.9e-05      0.47      27      49 ..     221     243 ..     214     248 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.9e-05
                  HHHHHHHTTSSTTXXXHHHHSSX CS
    PF07941.6  27 arererlahsraaaaaavaaata 49 
                   rere ++ ++ aaaaa+aaa++
  MMETSP0890-20130614|29524_1 221 EREREEQSPTQVAAAAAAAAAAS 243
                  58888888887777777765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1289  (0.0942803); expected 273.4 (0.02)
Passed bias filter:                      556  (0.0406671); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 1057.70
//
Query:       MMETSP0890-20130614|29528_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-24   86.8   0.0    2.3e-24   86.5   0.0    1.2  1  PF01979.15 Amidohydrolase family


Domain annotation for each model (and alignments):
>> PF01979.15  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   1.7e-28   2.3e-24     110     333 .]      84     317 ..      18     317 .. 0.87

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 1.7e-28
                  ..EHEEETTCHHHHHHHHHHHHHHHHHTHHHEECHHTTHCCHCHHHHHHHHHHHHEEETTEESSTCCTTTB......TS.-TTTGSTTSSCCCHHHHHHHHHHHHTTCEHCHHHHHHCHHHHSCHHHHHHHHHHHH---EEEEEHHBTCHHH-TTHHHHHHHHHHHHHHH..ETTS..--H.....GHHHHHHH..................................HHHHHHHHHTTHHHHHH---TTT-----------EEEE- CS
   PF01979.15 110 adlikvieaggkgakaidgvlpalaphdaqtvskeelkaevelaeeeeekeklgllvhihaaeasgekevvehlt..gkspverldhllllknaikggvtllahclhlddeaiellkergsgvahcplsnesvlhregrksllegdaqgigelgsggarlakvaeeagvk..lgtD..gva.....eelkvalllg................................lslkealrmaTinpAkalglddeiGsievGkdADlvvvd 333
                  + +i   ++++k+a++   + p+++p+ ++++s+  l    +la++     + +l  ++h+ e+  e+ ++++ +  +++ + +l+h++ll     + +tllahc h  + +ie+++++ + ++ cplsn +                     + + ++++++ +++ ++  l tD  g +     +++++a+l +                                l+  eal  aT+ +A alg  + iGs+evGk++D  ++d
  MMETSP0890-20130614|29528_1  84 EGFIQ--NTLNKTATKKYLIEPIITPRFLPSCSEQLLQGLGALAKK-----Y-NLKTQTHMSETIDEIDASKKAFpeFPTDAHALEHFGLL-----NQNTLLAHCCHMQPGEIEIVHKAQAAIVSCPLSNFY--------------------FAKAALPIKTLVCQHSLQvaLSTDiaGGYspsmlNAMRTAVLASktlqfqthptsvfsqkntpplkdedqlrnthdLTHFEALYLATLGGATALGKAHLIGSFEVGKQFDALILD 317
                  34433..367899999******************************.....8.***********99999999999999999999*******.....************************************....................*************************95555****9999999999999999*************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.96
# Mc/sec: 901.13
//
Query:       MMETSP0890-20130614|29536_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-23   83.2   0.0      2e-23   82.9   0.0    1.0  1  PF11397.3 Glycosyltransferase (GlcNAc)


Domain annotation for each model (and alignments):
>> PF11397.3  Glycosyltransferase (GlcNAc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.4e-27     2e-23     223     342 ..       1     112 [.       1     113 [. 0.94

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 1.4e-27
    PF11397.3 223 vpfDphlpylFdGEEvlysaRlwtaGydlyaPkrllvfhlYsrskapkvwsehteesekkkwearrlrseeRvlyllgreavkeeaateteeividlkrYglgkersleeyeeyagidfa 342
                  vp+Dph+ +lF GEE +++aRl+t+G+d+++P++++++h +sr+ +p +  +h + +    ++++r++s +R+++l+g+   ++        +v dl+r++lg er+l+++e+ +g+df+
  MMETSP0890-20130614|29536_1   1 VPYDPHFRFLFFGEEQAMAARLFTHGFDFFTPTTAVLYHKWSRQGRPDFKRDHARIHGPGVQTELREQSLRRLEVLFGQVGDAQ--------TVPDLQRFALGIERTLSDFEHQLGVDFK 112
                  8****************************************************9999999999**************5555544........5899**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 498.44
//
Query:       MMETSP0890-20130614|29538_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   57.2   0.0    1.6e-15   56.8   0.0    1.2  1  PF06487.7 Sin3 associated polypeptide p18 (SAP18)


Domain annotation for each model (and alignments):
>> PF06487.7  Sin3 associated polypeptide p18 (SAP18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   1.2e-19   1.6e-15      37     122 .]       2      89 ..       1      89 [. 0.93

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 1.2e-19
    PF06487.7  37 pknelqiytWqdatLrELvqllkesllparkkgtrlsfrlvypdkkkgrylskdlgsvivgqkes...daektLqdakFviGdyldvaI 122
                  pk+elq y W ++t+ ++v+ + e  +  rk   +ls+++vypdk+ g+  +k +g + + qk+    +a  tLqd +F+ Gd++dva+
  MMETSP0890-20130614|29538_1   2 PKDELQTYLWSESTMCDIVDVVLEACQSLRKPKCKLSIATVYPDKH-GNLNVKKIGVLWAQQKGRdyrEARMTLQDIGFEPGDFIDVAV 89 
                  899*****************************************55.8888888******888877789******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 490.87
//
Query:       MMETSP0890-20130614|29561_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-12   44.7   1.5     0.0077   16.0   0.0    4.8  5  PF01535.15 PPR repeat
      3e-09   36.3   0.3    4.1e-05   23.4   0.1    5.0  6  PF13812.1  Pentatricopeptide repeat domain
    2.1e-07   30.6   0.1      0.061   13.2   0.0    4.4  5  PF13041.1  PPR repeat family
    0.00026   20.4   0.9       0.51   10.1   0.1    3.2  4  PF13176.1  Tetratricopeptide repeat
    0.00077   18.9   0.8      0.014   14.8   0.4    3.0  1  PF00637.15 Region in Clathrin and VPS
  ------ inclusion threshold ------
      0.017   14.8   0.7        4.1    7.2   0.0    2.7  3  PF13424.1  Tetratricopeptide repeat
      0.087   13.3   0.2       0.92   10.1   0.0    2.2  2  PF13432.1  Tetratricopeptide repeat
       0.11   12.5   1.4         15    5.7   0.4    2.5  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
        2.2    8.3   5.1         21    5.2   0.0    3.5  4  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   2.9e+03       8      25 ..      50      67 ..      48      69 .. 0.78
   2 !    9.9   0.0   0.00044      0.67       5      28 ..      79     102 ..      79     103 .. 0.90
   3 !    5.8   0.0    0.0092        14       7      28 ..     118     139 ..     118     141 .. 0.87
   4 !   16.0   0.0     5e-06    0.0077       7      30 ..     154     177 ..     149     178 .. 0.89
   5 !    8.1   0.0    0.0017       2.5       4      25 ..     219     240 ..     216     240 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.9
   PF01535.15  8 sgyckaGkleeAlelfke 25
                 +g  ka+  +e+ +l+k 
  MMETSP0890-20130614|29561_1 50 RGITKAKSADEVQRLYKL 67
                 666789999999999986 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00044
   PF01535.15   5 slIsgyckaGkleeAlelfkeMke 28 
                  ++I  ++k G++eeA+ +++e ++
  MMETSP0890-20130614|29561_1  79 TVIERLGKLGLYEEAITFLEEVQK 102
                  678899**************9887 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0092
   PF01535.15   7 IsgyckaGkleeAlelfkeMke 28 
                  I ++++ G+ e+A+el+ ++++
  MMETSP0890-20130614|29561_1 118 IEVCSHGGLSEKAIELMSQIED 139
                  67899***********998765 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 5e-06
   PF01535.15   7 IsgyckaGkleeAlelfkeMkekG 30 
                  +++++k G +e Al l+k+M++k 
  MMETSP0890-20130614|29561_1 154 LRACAKDGAWERALALLKQMLSKK 177
                  79******************9985 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0017
   PF01535.15   4 nslIsgyckaGkleeAlelfke 25 
                  n+ +s++ +++++  Ale+f++
  MMETSP0890-20130614|29561_1 219 NAAMSACIRHNQPLVALEIFDK 240
                  889*****************96 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.4   2.1e+03       8      25 ..      49      66 ..      48      69 .. 0.83
   2 ?    0.1   0.0      0.78   1.2e+03       6      29 ..      79     102 ..      79     111 .. 0.84
   3 ?   -0.3   0.0         1   1.6e+03       8      29 ..     118     139 ..     118     144 .. 0.83
   4 !   23.4   0.1   2.7e-08   4.1e-05       2      30 ..     148     176 ..     147     179 .. 0.92
   5 ?   -0.6   0.0       1.3     2e+03       6      24 ..     187     205 ..     184     209 .. 0.80
   6 ?    3.8   0.0     0.049        74       5      25 ..     219     239 ..     216     241 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.4
    PF13812.1  8 italaksgrpeaAlalle 25
                 +++  k+ + +++++l++
  MMETSP0890-20130614|29561_1 49 LRGITKAKSADEVQRLYK 66
                 7788999999***99986 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.78
    PF13812.1   6 tlitalaksgrpeaAlalleeMeq 29 
                  t+i  l k g  e+A + lee ++
  MMETSP0890-20130614|29561_1  79 TVIERLGKLGLYEEAITFLEEVQK 102
                  688999999******999999776 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1
    PF13812.1   8 italaksgrpeaAlalleeMeq 29 
                  i  +++ g  e+A +l+++ e+
  MMETSP0890-20130614|29561_1 118 IEVCSHGGLSEKAIELMSQIED 139
                  56799999999*****999886 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 2.7e-08
    PF13812.1   2 etyntlitalaksgrpeaAlalleeMeqq 30 
                   +yn  ++a+ak g +e+Alall++M ++
  MMETSP0890-20130614|29561_1 148 KSYNWALRACAKDGAWERALALLKQMLSK 176
                  69************************876 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 1.3
    PF13812.1   6 tlitalaksgrpeaAlall 24 
                  + i+a+ +sg +++A +++
  MMETSP0890-20130614|29561_1 187 SAILACDRSGIWKQAARIV 205
                  6688888999999998876 PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.049
    PF13812.1   5 ntlitalaksgrpeaAlalle 25 
                  n+ + a+ + ++p  Al++++
  MMETSP0890-20130614|29561_1 219 NAAMSACIRHNQPLVALEIFD 239
                  789****************97 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.7   7.1e+03       9      27 ..      48      66 ..      48      67 .. 0.81
   2 ?    4.1   0.0     0.026        39       8      32 ..      79     103 ..      79     111 .. 0.91
   3 ?    1.2   0.0      0.21   3.2e+02      10      30 ..     118     138 ..     116     142 .. 0.79
   4 !   13.2   0.0     4e-05     0.061       5      33 ..     149     177 ..     143     182 .. 0.91
   5 !    5.8   0.0     0.008        12       3      27 ..     215     239 ..     213     240 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.7
    PF13041.1  9 lIsglckkgkveeAfklfn 27
                 +++g  k++  +e  +l++
  MMETSP0890-20130614|29561_1 48 ILRGITKAKSADEVQRLYK 66
                 5778889999999999985 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.026
    PF13041.1   8 tlIsglckkgkveeAfklfneMkkr 32 
                  t+I  l k g +eeA+ +++e +k+
  MMETSP0890-20130614|29561_1  79 TVIERLGKLGLYEEAITFLEEVQKE 103
                  799*****************99985 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.21
    PF13041.1  10 IsglckkgkveeAfklfneMk 30 
                  I  + + g  e+A++l+++ +
  MMETSP0890-20130614|29561_1 118 IEVCSHGGLSEKAIELMSQIE 138
                  566677788999*****9876 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 4e-05
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrg 33 
                  +YN  +++++k g +e A+ l+++M +++
  MMETSP0890-20130614|29561_1 149 SYNWALRACAKDGAWERALALLKQMLSKK 177
                  8************************9886 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.008
    PF13041.1   3 vvtYNtlIsglckkgkveeAfklfn 27 
                  +++ N+ +s++ ++++   A+++f+
  MMETSP0890-20130614|29561_1 215 TICTNAAMSACIRHNQPLVALEIFD 239
                  5778********************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0     0.003       4.5      11      24 ..      86      99 ..      77     108 .. 0.88
   2 ?   -1.8   0.0       2.1   3.2e+03       9      21 ..     121     133 ..     119     136 .. 0.76
   3 !   10.1   0.1   0.00033      0.51       7      26 ..     155     174 ..     155     185 .. 0.88
   4 ?   -3.3   0.0       6.8     1e+04       9      20 ..     192     203 ..     190     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.003
    PF13176.1 11 rlgdyekAielyer 24
                 +lg ye+Ai+++e+
  MMETSP0890-20130614|29561_1 86 KLGLYEEAITFLEE 99
                 599*********98 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.1
    PF13176.1   9 ysrlgdyekAiel 21 
                  +s  g  ekAiel
  MMETSP0890-20130614|29561_1 121 CSHGGLSEKAIEL 133
                  555677899*997 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00033
    PF13176.1   7 rlysrlgdyekAielyeraL 26 
                  r++ ++g +e+A+ l++++L
  MMETSP0890-20130614|29561_1 155 RACAKDGAWERALALLKQML 174
                  6899**************76 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 6.8
    PF13176.1   9 ysrlgdyekAie 20 
                  + r+g +++A++
  MMETSP0890-20130614|29561_1 192 CDRSGIWKQAAR 203
                  667777999986 PP

>> PF00637.15  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   9.1e-06     0.014       8     120 ..      75     206 ..      68     212 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.1e-06
                  --STTTHHHHHTTT-GGGGTGGGTS--................-S..--HHHHHHHHHHHHHTT--HHHHHTTSS---S-TTHHHHHHHT-SSHHHHHH.........HH----THHHHSS-SSTT--TTGGGTTTT CS
   PF00637.15   8 idlsevvklfekaglleelieyLekvl.............ketsr..enpavqtallelyakyedpekleeflkknnnydlekvaklcekadlyeeavi.........lykkinefkkaisllkklkdfddaieyak 120
                  +++  v++ + k gl+ee i +Le+v+             k++ +   +  + ++ +el+ + ed+++   +lk++n      +++ c k + +e+a+          ly + +++  ai  +++ + +++a++++k
  MMETSP0890-20130614|29561_1  75 EENITVIERLGKLGLYEEAITFLEEVQkeiggnrvnpqlvKTGIEvcSHGGLSEKAIELMSQIEDCKDKTIVLKSYNW-----ALRACAKDGAWERALAllkqmlskkLYARKENYLSAILACDRSGIWKQAARIVK 206
                  5566799999999**************766666666665544444566677777777777777776666666666665.....899********999999999999999999********99**********98765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.012        18      17      32 ..      86     101 ..      81     110 .. 0.83
   2 ?    7.2   0.0    0.0027       4.1      29      72 ..     128     173 ..     125     176 .. 0.83
   3 ?   -3.2   0.0       4.9   7.5e+03      14      25 ..     178     189 ..     177     194 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.012
    PF13424.1  17 rlgdydeAlelyekal 32 
                  +lg y+eA++++e++ 
  MMETSP0890-20130614|29561_1  86 KLGLYEEAITFLEEVQ 101
                  7899999999999875 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0027
    PF13424.1  29 ekalellrelgd..dhpdtaralnnlanlylalgdydeAleylekA 72 
                  eka+el ++  d  d   +++++n   +++++ g  + Al++l++ 
  MMETSP0890-20130614|29561_1 128 EKAIELMSQIEDckDKTIVLKSYNWALRACAKDGAWERALALLKQM 173
                  7888888888877778889999999999999999999999999985 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.9
    PF13424.1  14 vlrrlgdydeAl 25 
                  ++ r+++y +A+
  MMETSP0890-20130614|29561_1 178 LYARKENYLSAI 189
                  466666666665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.61   9.2e+02      10      24 ..      87     101 ..      82     104 .. 0.57
   2 ?   10.1   0.0    0.0006      0.92       9      63 ..     159     214 ..     154     216 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.61
    PF13432.1  10 aGdydeAlaaleaal 24 
                  +G y+eA+  le++ 
  MMETSP0890-20130614|29561_1  87 LGLYEEAITFLEEVQ 101
                  445555555555554 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0006
    PF13432.1   9 raGdydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  ++G +++Ala+l++ l +  +   e +l    a+ r g +++Aa+  + +l+ +P+
  MMETSP0890-20130614|29561_1 159 KDGAWERALALLKQMLSKKlYARKENYLSAILACDRSGIWKQAARIVKVFLKDTPY 214
                  78999***************99*****************************99998 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        19      69      83 ..      85      99 ..      57     100 .. 0.79
   2 ?    5.7   0.4    0.0098        15      28      79 ..     152     203 ..     126     212 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.013
                 HHTT-HHHHCCCHHH CS
    PF12895.2 69 lklgkydeAiavLek 83
                  klg y+eAi+ Le+
  MMETSP0890-20130614|29561_1 85 GKLGLYEEAITFLEE 99
                 58999********97 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0098
                  HHHHHHHHHH---HHHHHHHHHC...TSHCHCBHHHHHHHH.HHHHHTT-HHHHCC CS
    PF12895.2  28 lyalAlclylngeykrAyellrk...leldssslgcryllA.rcllklgkydeAia 79 
                  +     +  + g ++rA+ ll++   ++l +   + +yl A  ++   g +++A++
  MMETSP0890-20130614|29561_1 152 WA--LRACAKDGAWERALALLKQmlsKKLYA--RKENYLSAiLACDRSGIWKQAAR 203
                  33..456778899999999998885544444..46778876677777777777765 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.014        21      13      28 ..      86     101 ..      83     105 .. 0.87
   2 ?   -2.9   0.0       5.4   8.2e+03      25      30 ..     128     133 ..     128     136 .. 0.59
   3 ?    2.8   0.1     0.082   1.3e+02      10      28 ..     156     174 ..     155     176 .. 0.83
   4 ?   -0.3   0.1      0.77   1.2e+03      10      26 ..     178     194 ..     177     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.014
                  HTT-HHHHHHHHHHHH CS
   PF07719.12  13 klgdyeeAleafekAl 28 
                  klg yeeA+ ++e++ 
  MMETSP0890-20130614|29561_1  86 KLGLYEEAITFLEEVQ 101
                  7999*********976 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.4
                  HHHHHH CS
   PF07719.12  25 ekAlel 30 
                  ekA+el
  MMETSP0890-20130614|29561_1 128 EKAIEL 133
                  566666 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.082
                  HHHHTT-HHHHHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafekAl 28 
                  a++k g +e+Al+++++ l
  MMETSP0890-20130614|29561_1 156 ACAKDGAWERALALLKQML 174
                  7888999999999999877 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.77
                  HHHHTT-HHHHHHHHHH CS
   PF07719.12  10 ayyklgdyeeAleafek 26 
                  +y+++ +y  A+ a+++
  MMETSP0890-20130614|29561_1 178 LYARKENYLSAILACDR 194
                  7999****999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       466  (0.0340843); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 805.44
//
Query:       MMETSP0890-20130614|29559_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-21   73.9   1.9    9.1e-21   73.5   0.0    2.0  2  PF07717.11 Oligonucleotide/oligosaccharide-binding (OB)-fold
    5.9e-20   71.0   0.3    2.5e-19   69.0   0.0    2.1  2  PF04408.18 Helicase associated domain (HA2)


Domain annotation for each model (and alignments):
>> PF07717.11  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   1.3e-24   9.1e-21       2     108 ..     182     280 ..     169     283 .. 0.94
   2 ?   -1.9   0.9      0.35   2.4e+03      61      72 ..     360     399 ..     285     407 .. 0.43

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 1.3e-24
                  HHHHHHHHTT----......---TTSTTHHHHHHHHHH---TTSEEE.------EETT.G-B-EE-TTS---..---.SEEEEEEEEESSSEEEEEEEE--HHHHHHH- CS
   PF07717.11   2 QLrelledlglkeeaakasrssenesakdaellrkallaGlypniarldekgdYktvr.kqrvfiHpsSvla.ekkppewvvyaelvetsklymrnvtaiepewlllla 108
                  QL el+e+ +++          + ++++d++ lr+a++++++ n+a+l+  g+Y  +    ++ +HpsS+l+   ++p++v+y+elv tsk+ym++ ta++  wl++l+
  MMETSP0890-20130614|29559_1 182 QLLELMESKNIP----------HISCDTDWDHLRRAICSAYFFNAAKLKGVGEYVSLLnAIPCNLHPSSALFgLGFTPDFVCYHELVLTSKEYMKCTTAVDGHWLAELG 280
                  788888888886..........99**********************************888************99999****************************996 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.35
                  -............................B-EE-TTS--- CS
   PF07717.11  61 q............................rvfiHpsSvla 72 
                  +                            +v+   sS+la
  MMETSP0890-20130614|29559_1 360 ThqptsnykmcvpgssssssagkksdkkkEVSSSASSSLA 399
                  0333333333333334444444444444455555566666 PP

>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.7e-23   2.5e-19       2     102 .]      40     147 ..      39     147 .. 0.93
   2 ?   -0.9   0.1      0.21   1.4e+03      91      91 ..     311     311 ..     256     402 .. 0.59

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 3.7e-23
                  HHHHHHHTTSB-----B------GGGSSS-HHHHHHH---GGGT-..................HHHHHHHHHHHTS---B---TTGHHHHHH..HHHTT-----.........-HHHHH CS
   PF04408.18   2 alklLkklgAldengnLTdlGkklaelPldprlakmLllsaefgc..................ldeiltivallsvdsiflnpdkkkenaekdnaknkfkikearrklshpdgDhltll 102
                  ++ +L+ lgAld+ng+L  lGk +a++Pldp lak+Ll++a  g                    +e+l+iv++lsv+ if++p++++e++++  +++kf           p++Dhltll
  MMETSP0890-20130614|29559_1  40 SMYQLWILGALDNNGQLSILGKSMADFPLDPPLAKLLLFAAGQGNpgwlasahktnqtiaqlsSAEALIIVSALSVPTIFYRPKEREEESDA--TREKFF---------VPESDHLTLL 147
                  6789******************************************************************************9888888887..888884.........4567****97 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.21
                  . CS
   PF04408.18  91 l 91 
                  +
  MMETSP0890-20130614|29559_1 311 Y 311
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       668  (0.048859); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.91
# Mc/sec: 1079.68
//
Query:       MMETSP0890-20130614|29566_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-19   68.7   2.9    3.6e-19   68.6   2.0    1.0  1  PF00709.16 Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> PF00709.16  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   2.0   2.6e-23   3.6e-19       2      40 ..      17      55 ..      16      56 .] 0.97

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 2.6e-23
   PF00709.16  2 ivvvGaqwGDeGKGkivdllaekadvvvRvnGGanAGHt 40
                  vv+GaqwGDeGKGk+vd+la ++d+v+R+nGGanAGHt
  MMETSP0890-20130614|29566_1 17 CVVLGAQWGDEGKGKLVDVLAGDVDIVARYNGGANAGHT 55
                 79************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:01.11
# Mc/sec: 120.90
//
Query:       MMETSP0890-20130614|29555_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   12.8   0.0      0.068   12.0   0.0    1.3  1  PF07466.6 Protein of unknown function (DUF1517)
      0.068   12.8   0.1       0.21   11.3   0.0    1.8  2  PF07009.6 Protein of unknown function (DUF1312)


Domain annotation for each model (and alignments):
>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.9e-06     0.068      41     120 ..     595     674 ..     578     679 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.9e-06
    PF07466.6  41 gggysgggfgfpflipifgfGggflglfgllilvaivgvlvnalrsagggeegessaeasndkvsvvklqvgLlasakel 120
                  +++y+ ++  fp +i +fg+G+  +  f +++ + i+++l++++ +   + +   s+++ +d++ ++ +q  L ++ k++
  MMETSP0890-20130614|29555_1 595 ENYYECQTKRFPAMIDAFGIGFANARTFVYIVAICIAFCLIKIFPNRAYRYNTVVSENEIQDHARLLTIQAKLDGKRKQF 674
                  4567788889*************9********************988877788888888888888888888777766665 PP

>> PF07009.6  Protein of unknown function (DUF1312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     3e-05      0.21       1      54 [.      59     111 ..      59     126 .. 0.87
   2 ?   -2.8   0.0       0.7   4.8e+03       3      27 ..     625     644 ..     623     675 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
    PF07009.6   1 liiivliilsflpllvfskskkkeeekkavikvdGkvvkkinLskvkkkkeiki 54 
                  li+++ +++sf+ l++f   +++++ek + +k+dG  vk  ++++++ +  +++
  MMETSP0890-20130614|29555_1  59 LILVASFVISFVLLVYF-DFRNTRQEKFIAVKRDGSSVKCEKVRQQTFSGSFEL 111
                  58889999*****9999.899******************999999888888877 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.7
    PF07009.6   3 iivliilsflpllvfskskkkeeek 27 
                  i++++i++ l+ ++      +++ +
  MMETSP0890-20130614|29555_1 625 IVAICIAFCLIKIFP-----NRAYR 644
                  333333333333333.....22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.45s 00:00:01.45 Elapsed: 00:00:01.20
# Mc/sec: 1373.91
//
Query:       MMETSP0890-20130614|29572_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       153  (0.0111908); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 468.21
//
Query:       MMETSP0890-20130614|29578_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.86
# Mc/sec: 835.94
//
Query:       MMETSP0890-20130614|29581_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-08   33.2   0.5    8.9e-08   31.9   0.3    1.7  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.3   6.5e-12   8.9e-08      51     196 ..     130     288 ..      90     290 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 6.5e-12
    PF04755.7  51 LdGkWrLlYttskell.pllarkklpllkvgeiyQ.tIdvenksvqNsvelsglpllegsvsvaakfevaspkrvelkFeravlklkkl................lkglltslqdtasniaraissqlpi...kfrl..sgeeakgwLeitYlDedLRIsRGdeGslfv 196
                  L G W  ++tt+++   +  ++k+      + i   ++++   ++ N++++++      +++v  ++  +sp+r+ l+F  a+lk +k                 +++++       + i+++  s  p+     r+     ++++ +++ YlDedLR+ R   G++f+
  MMETSP0890-20130614|29581_1 130 LHGAWKNIWTTAADATfSP-KTKR-----GDAIVGnIVNARRGTITNIITFKAPDRKIDQLQVLISAYAVSPTRLRLTFLAATLKFRKRflglfkklvipvpaatFTKII----FFFQRIPNFFLSFIPLlrlRNRIikKTFPKAPYFDVLYLDEDLRVQRTGDGNIFI 288
                  89*********98776133.2333.....34444304699*************44456789***********************9988899******9999776633333....33444444444444431112222004446889**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.79
# Mc/sec: 882.71
//
Query:       MMETSP0890-20130614|29593_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-10   39.8   0.0    3.2e-10   39.4   0.0    1.2  1  PF01553.16 Acyltransferase
  ------ inclusion threshold ------
      0.077   12.1   0.0       0.17   11.0   0.0    1.6  1  PF04028.8  Domain of unknown function (DUF374)
      0.095   11.9   0.0       0.14   11.4   0.0    1.2  1  PF00795.17 Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> PF01553.16  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0     7e-14   3.2e-10      42     131 ..       5     115 ..       1     116 [. 0.85

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 7e-14
   PF01553.16  42 nvviiakkellsipllgflmrnlg..cifidR.......ksnkraagslenisellregklviiFPEGtrsrs............gellpfkkGlvrlaaklgvpivPiai 131
                   + ++ak el+++p+ g++m+++g  ++ +d+       + +++  + l +++e l++g+ + iFPEGtr               ++l+pfk+ +++la kl++ +v +a+
  MMETSP0890-20130614|29593_1   5 ETKYVAKSELFKVPFGGWAMKRGGdlAVRFDKnknqgwgTVKGSTGQLLLQAAEHLQNGNSIAIFPEGTRMGFdatraaeaaaheSKLMPFKPPFFDLAKKLNISVVCVAM 115
                  5789*****************998446666678888877555555666677778**************998888999999***99999*******************9987 PP

>> PF04028.8  Domain of unknown function (DUF374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.7e-05      0.17      32      70 ..      40      74 ..      25      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.7e-05
    PF04028.8 32 lGletirGSsskggaralrellralkegksvaitpDgPr 70
                  G++t+ GS+     + l+++ ++l++g+s+ai p g r
  MMETSP0890-20130614|29593_1 40 QGWGTVKGSTG----QLLLQAAEHLQNGNSIAIFPEGTR 74
                 68888888875....689*****************9976 PP

>> PF00795.17  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     3e-05      0.14      12      88 ..      41     113 ..      31     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3e-05
                  SHHHHHHHHHHHHHHH---------BEE--TTS------....SHHHHHHH-----.--HHHHHHHHHHHHT-B--EE CS
   PF00795.17  12 aafdlednlpglllliaeaarygadlivlPElgitgyahwlglgatealelaetlr.aevlaalsalarkagitviaG 88 
                   + + +++  +lll++ae +++g ++ ++PE   +g+     ++ ++a ++a++ +  ++   + +la+k +i+v++ 
  MMETSP0890-20130614|29593_1  41 GWGTVKGSTGQLLLQAAEHLQNGNSIAIFPEGTRMGF-----DATRAAEAAAHESKlMPFKPPFFDLAKKLNISVVCV 113
                  5566677778999999*********************.....77888888888888999999************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.71
# Mc/sec: 580.53
//
Query:       MMETSP0890-20130614|29600_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   18.5   0.2      0.001   18.5   0.1    1.1  1  PF12706.2 Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   7.5e-08     0.001     123     162 ..      10      46 ..       2      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 7.5e-08
                  -EEE....S--EEE-----S-HHHHHH.SEEEEE---B.... CS
    PF12706.2 123 fvle..tegkkvyysgDtgydfkeikgadllileagfyddde 162
                  +++e  ++gk v y+gDt   f     +dll+l+++ yddd+
  MMETSP0890-20130614|29600_1  10 LLIEkqSKGKDVIYAGDTIN-F----TIDLLLLNCTDYDDDH 46 
                  67888879**********99.5....8***********8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 266.69
//
Query:       MMETSP0890-20130614|29591_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-11   41.9   0.1    5.5e-06   26.4   0.0    2.5  2  PF13417.1 Glutathione S-transferase, N-terminal domain
    2.2e-08   33.9   0.0    1.2e-07   31.4   0.0    2.1  1  PF04755.7 PAP_fibrillin
     0.0095   15.7   0.0        1.8    8.5   0.0    2.5  2  PF13409.1 Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-09   5.5e-06       6      72 ..      62     132 ..      57     138 .. 0.83
   2 !   13.0   0.0   1.8e-05     0.081       1      72 [.     180     265 ..     180     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.2e-09
                  TSHHHHHHHHHHHH----EEE----TTTT..HHHHHHH-..TT--SSEEE----EEESHHHHHHHHHHH-- CS
    PF13417.1   6 fSpyarkvrlaLeekglpyelvevtpgkk..rpellaln..pkgkvPvLeddgevltdSlvIieyLeerfp 72 
                  +   +r vr aL ++ l+++++++  g++   +    ++  ++ k+PvL+d+ e +t+  +I+eyL e+++
  MMETSP0890-20130614|29591_1  62 TNAQSRSVREALTYLDLSVTIYPCATGSRhvYATTPWKSafRRPKIPVLVDGTERITGANDIVEYLLEKYE 132
                  5567899*****************98886564444555567999************************998 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.8e-05
                  EE--TTSHHHHHHHHHHHH----EEE----TTTT..........HHHHHHH-TT--SSEEE----....EEESHHHHHHHHHHH-- CS
    PF13417.1   1 LygspfSpyarkvrlaLeekglpyelvevtpgkk..........rpellalnpkgkvPvLeddge....vltdSlvIieyLeerfp 72 
                  Ly+++ +  +r v   L+e+ lp+e + +  g++          ++++   ++ + +P L+d+++    +  d + I++yL++++ 
  MMETSP0890-20130614|29591_1 180 LYTFEGCQCSRLVKERLYELDLPFENIACGVGSRrraslenelqKAQFHSGSRGQIIPYLIDPNTsfksIPGDPRNILRYLDSEYT 265
                  9*************************999877664333322222344466668889*****99774554666**********9985 PP

>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   2.7e-11   1.2e-07      44     197 ..     339     531 ..     286     532 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2.7e-11
    PF04755.7  44 plesldlLdGkWrLlYttskellpllarkklpllkvgeiyQtIdvenksvqNsvelsg......lplle.gsvsvaakfevaspkrvelkF.eravlklkkl.....................................lkglltslqdtasniaraissqlpikfrlsgeeakgwLeitYlDedLRIsRGdeGslfvl 197
                  pl s  l+d kW Ll+t++  ll++  r+ ++ +  ++i Q  d  +++++N++ +++      + +++ + v+v+++ +++  + ++ +  +++vl   ++                                      ++  t l + +s i ++      ++++l++    g L i+YlD+d  I    +G++++l
  MMETSP0890-20130614|29591_1 339 PLSS-GLIDDKWNLLWTSKPRLLQF-MRDGMMGIPCQSITQAFDLSKSRFENIIIFAPsyedrfIDDPDaAPVFVRHSYNIQRAETINTETsDESVLIQDEVqhhnianekdktttysrssvpsllsliatedfkdigtGNSDDTLLYKCSSRILKF---DNEMSVPLPP-VDGGTLTIVYLDDDFCIQLLSNGDYLIL 531
                  6655.8*****************99.6777779**********************8876667765444415699****99999888877531444444444479999*******************9999999776664233333444555555555...3334444444.456899*******999998888888887 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00039       1.8       8      69 ..      69     129 ..      63     130 .. 0.71
   2 !    4.7   0.0    0.0058        26      43      69 ..     233     262 ..     185     263 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00039
                  HHHHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHHH CS
    PF13409.1   8 vlialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlrylne 69 
                  v+ al ++ l  +i ++  + ++ ++    + +  r ++PvL+d +++ i+   +I++yl e
  MMETSP0890-20130614|29591_1  69 VREALTYLDLSVTIYPCATGSRHVYATTPWKSAFRRPKIPVLVD-GTERITGANDIVEYLLE 129
                  5556777777777777655555555554456666788******7.7789**********965 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0058
                  ----SEEE.----...EEESHHHHHHHHHH CS
    PF13409.1  43 rgtVPvLwdkdgt...vineSseIlrylne 69 
                     +P L+d++++   +  +   Ilryl++
  MMETSP0890-20130614|29591_1 233 GQIIPYLIDPNTSfksIPGDPRNILRYLDS 262
                  3459******998886666*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:00.94
# Mc/sec: 1374.08
//
Query:       MMETSP0890-20130614|29602_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   43.9   0.0    2.5e-11   43.0   0.0    1.4  1  PF09409.5 PUB domain


Domain annotation for each model (and alignments):
>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.8e-15   2.5e-11       7      70 ..      15      77 ..      10      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.8e-15
    PF09409.5  7 kkaleiLlkllkNIlknPneekyRrirlsNktfkekilsvegavelLellGFkeeeeeeflvlp 70
                  +a+ +L ++lkN++++P ++kyRrir++  + + k+++v++ +  L  +GF+ee+ e++l+l 
  MMETSP0890-20130614|29602_1 15 SNAVPLLKTILKNLSRDPANPKYRRIRMDGAAGQ-KLNQVPETMSTLAMVGFQEERTEDGLFLC 77
                 6899*************************99998.9*******************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       988  (0.0722645); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 730.32
//
Query:       MMETSP0890-20130614|29615_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-34  119.4   0.0    4.8e-34  118.0   0.0    1.7  1  PF10474.4 Protein of unknown function C-terminus (DUF2451)
  ------ inclusion threshold ------
       0.47   10.3   3.9       0.37   10.6   0.2    2.6  3  PF07365.7 Alpha conotoxin precursor


Domain annotation for each model (and alignments):
>> PF10474.4  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0     7e-38   4.8e-34       6     232 ..     263     506 ..     260     508 .. 0.84

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 7e-38
    PF10474.4   6 erivAveslsfvaeqlk.sikalleelLpekkaealdeFysqtvsivadlrkliykavasrllnleallnsvakvK..wdikelnsehnsyvdlllkeleqFakrl....deis.ksadvpke.........iekvLwehavklatelLvegfskvkkcsaeGRalMqlDfqkllskleklsgskpipdrsfvetYikayYlpekdlekwikeh.keYskkqlvsLvnlaasskkkarqkllnai 232
                    +vA  s++fv + l  s+   l++  p +k +a+++  s++  ++++lr l+y+   ++l   ea++ ++ +vK  w  + ++ e n yv+l+ k +      l    d++s ++++ +++          +++Lw +av+ a+e+ v+gf++v  cs+eGRalM++D+q l+ +l k+   +p   + +++ Yika+Y++e+dl  wi+++   Y  ++++sL  + + +++k ++++ +++
  MMETSP0890-20130614|29615_1 263 AAVVAARSIAFVSRVLCcSVATALDRATPGRK-SAAKRRISELCTAADQLRGLVYRSLGPALAGTEAIIRAIHHVKhaWAAETIQEECNDYVELVAKRFDTLWSTLcylvDNQStEATNSQDNlltrelqddDRELLWTEAVQAAFEAVVDGFANVETCSTEGRALMSMDLQVLQFSLDKIHRARPNRGAVYADSYIKAFYFAEDDLLAWINQNkASYKERHMISLASARLGKSAKRKKNIKDFL 506
                  5789999******9997245666666666655.56677789**********************************988999999***************9877666222244442222222224333333335689***************************************************************************999679***************9999999887665 PP

>> PF07365.7  Alpha conotoxin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.18   1.2e+03      10      37 ..     257     281 ..     255     285 .. 0.66
   2 ?   10.6   0.2   5.4e-05      0.37       4      29 ..     282     307 ..     280     310 .. 0.89
   3 ?   -3.3   0.0       1.2   8.3e+03      19      35 ..     333     349 ..     331     352 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.18
                  XXXXXXXXXXXXXXXXXXXXXXX.--TT CS
    PF07365.7  10 RasDGrNaaanekasdlialavrkeCCs 37 
                  R+s  r a++   a + ia   r  CCs
  MMETSP0890-20130614|29615_1 257 RESEIRAAVV---AARSIAFVSRVLCCS 281
                  6666677777...445555566668998 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 5.4e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF07365.7   4 VSftsDRasDGrNaaanekasdlial 29 
                  V + +DRa+ Gr  aa+++ s+l + 
  MMETSP0890-20130614|29615_1 282 VATALDRATPGRKSAAKRRISELCTA 307
                  6788*****************99865 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.2
                  XXXXXXXXXXXXXX.-- CS
    PF07365.7  19 anekasdlialavrkeC 35 
                  ++  ++++ a ++++eC
  MMETSP0890-20130614|29615_1 333 IHHVKHAWAAETIQEEC 349
                  56667788899999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:00.77
# Mc/sec: 1605.87
//
Query:       MMETSP0890-20130614|29628_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:01.19
# Mc/sec: 1647.24
//
Query:       MMETSP0890-20130614|29652_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.4   0.0       0.06   13.0   0.0    1.2  1  PF09602.5 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)


Domain annotation for each model (and alignments):
>> PF09602.5  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.4e-06      0.06     120     151 ..      38      69 ..      30      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.4e-06
    PF09602.5 120 seqyeevvkqlveeqkktreeaqkvleaylee 151
                   e+ye+ v  ++e+ +  r eaq  ++ay e+
  MMETSP0890-20130614|29652_1  38 PEKYERSVLAYMEKEQCSRMEAQGNMDAYFEN 69 
                  389***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 446.09
//
Query:       MMETSP0890-20130614|29658_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   15.3   0.0      0.021   15.0   0.0    1.2  1  PF14047.1 Dppa2/4 conserved region


Domain annotation for each model (and alignments):
>> PF14047.1  Dppa2/4 conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.5e-06     0.021       3      53 ..       2      48 ..       1      55 [. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.5e-06
    PF14047.1  3 vwCvvhga.evnkkgwlrlqlhaGrawvpekkgkaialfllpaslfpppgle 53
                 +w +++g+  +  +gw++l+   G++      ++a +l l+p + + p+gle
  MMETSP0890-20130614|29658_1  2 RWGGAFGRvLSAGNGWVQLKTTRGEVA-----KRAYELELVPDTEPIPKGLE 48
                 6999999988999****5555555555.....78***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 314.01
//
Query:       MMETSP0890-20130614|29649_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       826  (0.0604154); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.32u 0.47s 00:00:01.79 Elapsed: 00:00:00.98
# Mc/sec: 1547.85
//
Query:       MMETSP0890-20130614|29663_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   23.8   0.2    4.5e-05   23.6   0.1    1.1  1  PF13291.1 ACT domain


Domain annotation for each model (and alignments):
>> PF13291.1  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   3.3e-09   4.5e-05      28      80 .]       8      60 ..       1      60 [. 0.90

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.3e-09
    PF13291.1 28 seekaniesvniesrkkdglaeikltleVkdlehLerviakLrkipgVisVeR 80
                 + +++ni++v +e+r+   la ++ t+ V dl+ L+ v+a++ ++++V ++ R
  MMETSP0890-20130614|29663_1  8 AVSQVNIVDVVSETRAPRSLAAFSYTVHVPDLATLRAVVASVLAVDDVFQIIR 60
                 44579*********99999*******************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 364.82
//
Query:       MMETSP0890-20130614|29659_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-14   52.3   0.0    1.2e-13   51.5   0.0    1.4  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    7.9e-05   22.3   0.0    0.00016   21.3   0.0    1.6  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.7e-17   1.2e-13      24     119 ..       6     103 ..       1     104 [. 0.87

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 1.7e-17
                  CSEEEEEEEGSSHCCHHHH..HHHCTHH....CCSSHHHHHHSTT-SEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHT--EEEE CS
   PF01408.17  24 rreelvalvdpdperaeav..aesfgve....aysdleelledpkidavivatpngthadlalaaleagkhvllEKPlattveeakelvelaekkgkivsvg 119
                  +++++ a++++  ++ae++  a   +++    a + l+el +   +dav+v++pn+ h++ ++a+le+   vl+EK l+t++ee ++lv+la+ k+  ++ g
  MMETSP0890-20130614|29659_1   6 EGHQVSAVISRTRANAEKFagA---HCPkgaiALTGLDELET-GMVDAVYVGSPNDSHFKDVKALLEKRQPVLCEKSLTTSMEETDALVQLAKDKSTFLMEG 103
                  5679***************442...33335579999999999.56*************************************************99877765 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.3e-08   0.00016       1      53 [.     116     166 ..     116     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.3e-08
                  HHHHHTTGG--SSEEEE.EEEEEEECCSCHHCTTSSCCHHCHHCCTTCHHHHHH CS
   PF02894.12   1 keliengklGevvsvsv.wflddragrpskkrwkrrakkggGvlgdlgiHdiDl 53 
                  +eli +g++G++v v+    +d   g p+++r++   +k+gG+++d+gi++i  
  MMETSP0890-20130614|29659_1 116 RELINQGAIGDIVKVQAeFGYDIENGCPASVRGN---AKTGGMTMDIGIYLIEK 166
                  89***************5557788999*******...59***********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.64
# Mc/sec: 1284.30
//
Query:       MMETSP0890-20130614|29667_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   16.9   0.0        0.1   11.6   0.0    2.5  2  PF02577.9 Bifunctional nuclease


Domain annotation for each model (and alignments):
>> PF02577.9  Bifunctional nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0049        66      14      42 ..      44      72 ..      32      78 .. 0.79
   2 !   11.6   0.0   7.7e-06       0.1      79     122 ..     194     234 ..     190     247 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0049
    PF02577.9 14 spvvlLreeegerqlpIwigaaeaqaiaa 42
                   vv+L  e+ +r  pI i + +++a+  
  MMETSP0890-20130614|29667_1 44 GFVVFLVSEDMKRLCPISISKRDTEAVVS 72
                 57999***************999988765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 7.7e-06
    PF02577.9  79 dntFyAklvleegeeeieiDaRpSDaialAlrtgapIyvseevl 122
                  +n+F  +l  ++g    ++  Rp +a+a A+r+++p  ++  ++
  MMETSP0890-20130614|29667_1 194 ENVFKTSLLSQDGA---QVTVRPFEAMAFAIRYKVPFRIDPTIF 234
                  899*****999998...9******************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 1285.32
//
Query:       MMETSP0890-20130614|29684_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   11.9   0.4      0.054   11.9   0.3    1.0  1  PF05136.8 Phage portal protein, lambda family


Domain annotation for each model (and alignments):
>> PF05136.8  Phage portal protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   3.9e-06     0.054      70     121 ..      11      64 ..       2      67 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-06
    PF05136.8  70 eaealrreierlwrdWaedp.ecDvegrltfyqlqrlalrtvl.rdGEvfvrlr 121
                   +e+++ +++rlw+ W +++    +++ + +++l+  +   +l ++G ++++++
  MMETSP0890-20130614|29684_1  11 TDEEFEYAVQRLWELWFSERgTKNLKRLQEIDELISAGRAFWLrAEGNALALCQ 64 
                  69**************999999999********999999999977899988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 286.71
//
Query:       MMETSP0890-20130614|29689_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.4   0.0      0.042   13.4   0.0    2.2  2  PF00589.17 Phage integrase family


Domain annotation for each model (and alignments):
>> PF00589.17  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.013   1.8e+02      23      40 ..     275     292 ..     261     304 .. 0.84
   2 !   13.4   0.0   3.1e-06     0.042     125     170 ..     421     468 ..     382     471 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.013
                  HHHH---HHHH---HHHH CS
   PF00589.17  23 drllvellleTglRisEl 40 
                   r+ + ++l+Tg R +E+
  MMETSP0890-20130614|29689_1 275 WRACLLTMLSTGFRKNEI 292
                  578899***********8 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.1e-06
                  -..SS----TTT---HHHHHH----HHHHHH-----SSHHHHHHCTTS CS
   PF00589.17 125 e..keltpHtLRhsfatallesGvdlkvvqkllGHssisttkiYthva 170
                  e  +  + H++R  +a all+sG +l  +q ll + s ++   Y++++
  MMETSP0890-20130614|29689_1 421 EaaQCYSLHSFRIGLACALLKSGKPLPLIQALLRWMSPESLIPYARLD 468
                  33356789********************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.95
# Mc/sec: 1314.21
//
Query:       MMETSP0890-20130614|29682_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.4   8.7      3e-10   39.9   6.1    1.8  1  PF02148.14 Zn-finger in ubiquitin-hydrolases and other protein
    3.8e-06   26.3   0.0    8.7e-06   25.1   0.0    1.6  1  PF07576.7  BRCA1-associated protein 2
    6.6e-06   25.7   1.1    6.6e-06   25.7   0.8    2.8  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    7.8e-06   25.4   1.9    7.8e-06   25.4   1.3    3.6  3  PF13639.1  Ring finger domain
    0.00017   21.0   1.8    0.00017   21.0   1.2    2.8  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    0.00033   20.6   5.5    0.00033   20.6   3.8    2.7  2  PF12678.2  RING-H2 zinc finger
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.058   12.8   0.0    1.7  1  PF07145.10 Ataxin-2 C-terminal region
        3.1    5.9   9.3        4.7    5.3   6.5    1.2  1  PF03961.8  Protein of unknown function (DUF342)
        3.6    7.2   5.6        7.3    6.2   3.9    1.5  1  PF07889.7  Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> PF02148.14  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   6.1     2e-13     3e-10       1      61 [.     388     444 ..     388     447 .. 0.95

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2e-13
   PF02148.14   1 CseCnsenknlWlCLkCghvgCgrksnghalkHyeetgHplavdlstlsvycyscddeved 61 
                  C +C+ +   lWlCL Cgh+gC     +hal+H+e + H +a+ ++t +v+++s + +v++
  MMETSP0890-20130614|29682_1 388 CDDCDVS-DGLWLCLLCGHCGCEA---HHALEHFEISSHGYAMHTDTRHVWDFSGEGFVHR 444
                  9****99.9**************6...9**************************9999875 PP

>> PF07576.7  BRCA1-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   5.7e-09   8.7e-06      11     103 ..     147     244 ..     140     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 5.7e-09
    PF07576.7  11 rsllllillvvpallelddllffvakiqkviqilrilrdgspnry.....mvLikFrsqedadeFyeefnGkqFnslepdvChllfvkevevtkseel 103
                  +s++ l +l vp+ l + dll++ a+    i+++r+ r   p  +      vL++ +s + a + y++  G+ F   ep  C+l +v+   ++k  + 
  MMETSP0890-20130614|29682_1 147 PSTTCLAMLGVPSRLIASDLLQVLAPWRDCIRHIRVARHCEPPAWpsaltFVLLRLESISAAERLYQSIQGRCFHAREPARCQLAYVDGLAWSKLADE 244
                  56778889999999999**********************9998764444469************************************9999987655 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.8   4.3e-09   6.6e-06       2      45 ..     305     374 ..     304     375 .. 0.93
   2 ?   -4.7   4.2         9   1.4e+04      15      27 ..     397     409 ..     386     421 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.3e-09
    PF13923.1   2 rfsCpiCleelen.............................pviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  ++sC++Cle+l                                +++t C H ++ +C+++w +     CP+Cr
  MMETSP0890-20130614|29682_1 305 KDSCVVCLEKLFIidepgagwgksssstnqrtgspqpgstqlQLFTTACDHTFHTDCLSKWRDA---PCPVCR 374
                  689******9966679**************************8899***************877...*****9 PP

  == domain 2    score: -4.7 bits;  conditional E-value: 9
    PF13923.1  15 pviltpCgHlyCk 27 
                   + ++ CgH+ C+
  MMETSP0890-20130614|29682_1 397 LWLCLLCGHCGCE 409
                  5678899*99886 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.13     2e+02       2      10 ..     307     315 ..     306     321 .. 0.86
   2 !   25.4   1.3   5.1e-09   7.8e-06      15      44 ..     347     374 ..     339     376 .. 0.88
   3 ?   -3.9   5.9       7.3   1.1e+04       5      27 ..     386     409 ..     385     418 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.13
    PF13639.1   2 eCaiCldel 10 
                  +C++Cl++l
  MMETSP0890-20130614|29682_1 307 SCVVCLEKL 315
                  8*****987 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 5.1e-09
    PF13639.1  15 evvrlpCgHvfHeeCldewlrssnsCPlCr 44 
                  ++ ++ C H+fH +Cl++w      CP+Cr
  MMETSP0890-20130614|29682_1 347 QLFTTACDHTFHTDCLSKWRD--APCPVCR 374
                  567899*************87..9*****9 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 7.3
    PF13639.1   5 iCldelsegeevvrlp.CgHvfHe 27 
                   C+d+++ ++ +  +  CgH+ +e
  MMETSP0890-20130614|29682_1 386 ACCDDCDVSDGLWLCLlCGHCGCE 409
                  59999977777775545****885 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.2   1.1e-07   0.00017       1      41 []     308     373 ..     308     373 .. 0.76
   2 ?   -8.3   4.7         9   1.4e+04      14      23 ..     400     409 ..     386     410 .. 0.62

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.1e-07
                  -TTTSSS-SSEE..............................BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepn.............................elleCkHsfCskCirkilksrkkvkCPlC 41 
                  C +Cle++ +++                              ++ C+H+f+++C++k+++     +CP+C
  MMETSP0890-20130614|29682_1 308 CVVCLEKLFIIDepgagwgksssstnqrtgspqpgstqlqlFTTACDHTFHTDCLSKWRD----APCPVC 373
                  6666666666666666666666666666666777777777789*****************....89**** PP

  == domain 2    score: -8.3 bits;  conditional E-value: 9
                  BSCTS-EE-C CS
   PF00097.20  14 lleCkHsfCs 23 
                   l C+H  C+
  MMETSP0890-20130614|29682_1 400 CLLCGHCGCE 409
                  5668887775 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   3.8   2.2e-07   0.00033      18      75 .]     304     374 ..     280     374 .. 0.77
   2 ?   -4.4   2.3         9   1.4e+04      28      55 ..     383     409 ..     380     414 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.2e-07
    PF12678.2  18 sednCaiCrneleelcpeckapg...................ksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                   +d C++C ++l    +  + pg                    s + ++   +C H FH++C+skW +    CP+cr
  MMETSP0890-20130614|29682_1 304 HKDSCVVCLEKL----FIIDEPGagwgksssstnqrtgspqpGSTQLQLFTTACDHTFHTDCLSKWRD--APCPVCR 374
                  477899998888....3333444447777788888888887777789999999*************75..56****8 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 9
    PF12678.2  28 eleelcpeckapgksde.cpvawgeCgHa 55 
                  +l  +c +c++++      +++ g+Cg  
  MMETSP0890-20130614|29682_1 383 ALAACCDDCDVSD--GLwLCLLCGHCGCE 409
                  5678899999888..33455556777655 PP

>> PF07145.10  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.8e-05     0.058       5      17 ..      52      64 ..      51      65 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.8e-05
   PF07145.10  5 kLNPnAkEFVPsv 17
                 +LN  A EFVP++
  MMETSP0890-20130614|29682_1 52 QLNADAVEFVPGG 64
                 8**********98 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.5    0.0031       4.7     330     404 ..     577     652 ..     524     668 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0031
    PF03961.8 330 pelkeklkeleeeleeleeeleklkkklkklpklka.egqlesekkeqleklletkeklkeeleeleaelkelkee 404
                  pe ++++++l+++ +++ ++  kl++kl+ ++++ + +++l+++ + +++  +etk+k ++ele+ +++ k l+++
  MMETSP0890-20130614|29682_1 577 PEQQQRMHALRRRRKQIDAKRAKLQAKLNAVQEELIfQDELNKTLEIDVATSEETKIKAQQELEQATEIAKCLEAK 652
                  3344444445555555554555555554444444444444444444555555555555555555555444444444 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.9    0.0048       7.3      56     120 ..     590     654 ..     580     666 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0048
    PF07889.7  56 seavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLeskle 120
                   +++ + + +L ++++ ++++l  q e+ k+ + +v++ +e+  + ++++++ +++ + Le k +
  MMETSP0890-20130614|29682_1 590 RKQIDAKRAKLQAKLNAVQEELIFQDELNKTLEIDVATSEETKIKAQQELEQATEIAKCLEAKFK 654
                  5678888889***************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1095  (0.0800907); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:00.95
# Mc/sec: 1838.89
//
Query:       MMETSP0890-20130614|29704_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.8   0.5       0.17   11.3   0.4    1.3  1  PF12743.2 Oestrogen-type nuclear receptor final C-terminal


Domain annotation for each model (and alignments):
>> PF12743.2  Oestrogen-type nuclear receptor final C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   1.3e-05      0.17       6      25 ..      31      51 ..      27      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
    PF12743.2  6 gtpmEEesqSqL.ttgSTSsH 25
                 ++  EE +qS   tt+S+Ss+
  MMETSP0890-20130614|29704_1 31 SPYDEECDQSVHlTTSSGSSP 51
                 67789*****766*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 252.47
//
Query:       MMETSP0890-20130614|29707_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-21   75.6   0.0    2.8e-21   75.4   0.0    1.0  1  PF00122.15 E1-E2 ATPase


Domain annotation for each model (and alignments):
>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   2.1e-25   2.8e-21      36     148 ..       2     113 ..       1     119 [. 0.89

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 2.1e-25
   PF00122.15  36 atvirdgkeqeipakeLvvGDiviiktGdrvpaDgrlieagslevdesalTGEslpvtksvelaergnkvfsgtvvlsgegkaiVtatgketeigkiarlvqeaks.aetplqk 148
                  +tv rdg+ ++ p++ Lv+GD++ ++ Gd +paD+  ++  +++vd++alTGE  p +      + +   ++g++ +sg+ ++ V++tg  te+g+ + l+q++++ +++ +++
  MMETSP0890-20130614|29707_1   2 TTVKRDGEFNKLPTSALVPGDVIYLRGGDSIPADIDYLDGDTMSVDTAALTGEPFPRKVP--NSKGNRRTLAGCMTVSGNTYCLVQRTGIFTEMGSATLLMQQSTKpTQSVFER 113
                  79*************************************99*************777666..44556678*******************************9999955555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.32s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 449.78
//
Query:       MMETSP0890-20130614|29703_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0088   15.9   0.0      0.022   14.6   0.0    1.7  1  PF00498.21 FHA domain
  ------ inclusion threshold ------
      0.037   14.0   0.0       0.32   11.0   0.0    2.2  2  PF00533.21 BRCA1 C Terminus (BRCT) domain
       0.14   11.8   0.0       0.44   10.3   0.0    1.8  2  PF12738.2  twin BRCT domain


Domain annotation for each model (and alignments):
>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.9e-06     0.022      11      68 .]      55     111 ..      32     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.9e-06
                  S---TTTS-TTCEEEEEEET.CEEEEEEECST--EEETTEECSTTSEEEE-TTEEEEEC CS
   PF00498.21  11 ivlddpsiSrkHalikydeg.gkfyleDlgSknGtfvNgqrigkgepvrLksgdvielG 68 
                  +vl+dp i  +Ha+i+++   g   ++       t v+g+  ++  + rL+ g+++++G
  MMETSP0890-20130614|29703_1  55 LVLSDPEICPRHAIIEIRIAeGDALVRC--RNGQTIVDGVECRPRISRRLQIGSTVKFG 111
                  799***********97766656999999..357789**********************8 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     7e-05      0.32      14      74 ..     357     417 ..     352     421 .. 0.78
   2 ?    0.1   0.0      0.17   7.8e+02       3      37 ..     455     494 ..     453     520 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7e-05
                  SSTTSSHHHHHHHHHHHCT-EEESSGSSSCSEEEEECCBSHCHHHHHHHHTTCEEE.ETHHH CS
   PF00533.21  14 gtfdnfnreeleelikelGGkvstevskktthlvvgepelrtlkylaaialnipiv.neeWl 74 
                  g  d+ +re++ +li  +G+   t+   + thl++++  +rt ++laaia n+ +v n+ Wl
  MMETSP0890-20130614|29703_1 357 GIVDQKDREDIGRLISGFGAIA-TNKACDATHLITSDQLKRTPNFLAAIAANVEYVlNFGWL 417
                  7778999*************97.5555566777777777*************9975266666 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.17
                  TTTTTTCEEEE.....SSTTSSHHHHHHHHHHHCT-EEES CS
   PF00533.21   3 pklFeglkfyi.....gtfdnfnreeleelikelGGkvst 37 
                  +k+++g+ + +        + ++ +el e++++ GG + +
  MMETSP0890-20130614|29703_1 455 TKVLQGYMVALapglrHETKLPKDSELDEIVQAAGGIFVH 494
                  567777777777777555566677899*********8844 PP

>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.7e-05      0.44       3      42 ..     353     392 ..     352     398 .. 0.84
   2 ?   -3.3   0.0       1.7   7.8e+03      15      30 ..     480     495 ..     476     500 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.7e-05
    PF12738.2   3 icvsgysgdd.rkrlqkliralGasiskeltkkvTHLickr 42 
                  i v+g+ ++  r+++ +li+ +Ga  + +   + THLi ++
  MMETSP0890-20130614|29703_1 353 ILVTGIVDQKdREDIGRLISGFGAIATNKAC-DATHLITSD 392
                  67889888877*************9888765.78****976 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.7
    PF12738.2  15 rlqkliralGasiske 30 
                  +l +++ a G+ + ++
  MMETSP0890-20130614|29703_1 480 ELDEIVQAAGGIFVHD 495
                  67889999**999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:00.83
# Mc/sec: 1775.61
//
Query:       MMETSP0890-20130614|29715_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   16.1   2.7        3.4    7.9   0.1    2.7  2  PF13754.1 Bacterial Ig-like domain (group 3)
  ------ inclusion threshold ------
      0.071   13.3   0.1        1.4    9.2   0.0    2.2  2  PF14200.1 Ricin-type beta-trefoil lectin domain-like


Domain annotation for each model (and alignments):
>> PF13754.1  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.3   0.00067       4.6      12      30 ..      57      73 ..      44      79 .. 0.67
   2 !    7.9   0.1    0.0005       3.4      11      30 ..     116     134 ..     108     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00067
    PF13754.1 12 GtWsvtvpaladGtytvtv 30
                 G W  t++ ++dGtyt++ 
  MMETSP0890-20130614|29715_1 57 GWW--TLDESSDGTYTISF 73
                 555..555666*****994 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0005
    PF13754.1  11 dGtWsvtvpaladGtytvtv 30 
                  dG W+++ +a +dGt+t++ 
  MMETSP0890-20130614|29715_1 116 DGRWTIEKDA-TDGTHTISF 134
                  6999999998.9*****985 PP

>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0002       1.4      48      71 ..      52      76 ..      12      84 .. 0.72
   2 ?    2.3   0.0     0.027   1.9e+02      51      67 ..     116     133 ..      92     144 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0002
    PF14200.1 48 g.daaqqWkisqvgdgtyrirnant 71
                 +   a  W++++++dgty+i  +++
  MMETSP0890-20130614|29715_1 52 DdGSAGWWTLDESSDGTYTISFVSS 76
                 246777899999********87754 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.027
    PF14200.1  51 aqqWkisqvg.dgtyrir 67 
                    +W+i++++ dgt +i 
  MMETSP0890-20130614|29715_1 116 DGRWTIEKDAtDGTHTIS 133
                  567888885537766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 514.00
//
Query:       MMETSP0890-20130614|29720_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       144  (0.0105325); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                         1  (7.31422e-05); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.65
# Mc/sec: 210.14
//
Query:       MMETSP0890-20130614|29723_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-39  133.1   0.2      1e-38  132.6   0.1    1.2  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.1   7.4e-43     1e-38       2     200 ..      58     251 ..      57     252 .. 0.98

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 7.4e-43
                  EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEESTEEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH.....................................SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
   PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeelsitllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi...................................gggelfgpdalekllekygvdlvlrGHeHv 200
                  +i ++gD+Hg+++dl    l+ll++++++   ++lflGD+vdr ++s+et+all  l++k+++   +fllrGNHE+  +n+ ygf++e+                                    ++  + ++ + ++f+++p++a++  k+ ++Hg+ls++++   +i                                   g+++ fgpd+ +++l+ +++ l++r+H+ v
  MMETSP0890-20130614|29723_1  58 PINICGDTHGQFHDL----LALLDMGGYPLQANYLFLGDYVDRAKQSIETIALL--LCYKIRYRESFFLLRGNHECAALNRIYGFFDECK----------------------------------RRYSVKLWRIFGDCFNCMPIAAIIADKVMCMHGGLSPDLEDLGQItsiqrpcevpedglicdlvwsdpdpqivgwgynsrGVSYTFGPDVIRDFLQTHDLELICRAHQVV 251
                  7889***********....***********************************..*********************************9..................................699********************************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.85
# Mc/sec: 1071.31
//
Query:       MMETSP0890-20130614|29724_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.0   0.4       0.14   12.0   0.3    1.9  2  PF12918.2 TcdB toxin N-terminal helical domain


Domain annotation for each model (and alignments):
>> PF12918.2  TcdB toxin N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3     0.033   4.5e+02      39      54 ..       6      20 ..       5      26 .. 0.67
   2 ?   12.0   0.3   1.1e-05      0.14      23      46 ..      24      47 ..      23      59 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.033
                 HHHHSTT---H....HH CS
    PF12918.2 39 Ynnlykkekns.rkGsa 54
                 Yn++   e ns  kG+ 
  MMETSP0890-20130614|29724_1  6 YNTA--YESNSkKKGNF 20
                 9999..77788666665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHHSTT- CS
    PF12918.2 23 kkkyellkklkkeidnYnnlykke 46
                 +k ++++kk+k  i+ Yn+++kk+
  MMETSP0890-20130614|29724_1 24 TKELNEFKKAKHRIGWYNKTRKKS 47
                 68899***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.93
# Mc/sec: 154.60
//
Query:       MMETSP0890-20130614|29737_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.54
# Mc/sec: 692.28
//
Query:       MMETSP0890-20130614|29745_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 393.69
//
Query:       MMETSP0890-20130614|29764_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1594  (0.116589); expected 273.4 (0.02)
Passed bias filter:                      452  (0.0330603); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.80
# Mc/sec: 1003.47
//
Query:       MMETSP0890-20130614|29765_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-12   44.9   0.0      9e-12   44.6   0.0    1.1  1  PF10294.4  Putative methyltransferase
     0.0015   17.6   0.0     0.0021   17.1   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0016   17.7   0.0     0.0025   17.1   0.0    1.2  1  PF03602.10 Conserved hypothetical protein 95
     0.0026   18.2   0.1     0.0072   16.7   0.1    1.8  2  PF12847.2  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.6e-15     9e-12      14     142 ..      36     149 ..      30     190 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.6e-15
    PF10294.4  14 gnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvkt 142
                   +  g  +W+  ++++ +l++         el+g++ lELG+G+  +  ++a++ +  +v+ tD  + l++   n+  n  a + ++ +++L Wg + ++d+    ++D+i+a+D+vY   s e L ++
  MMETSP0890-20130614|29765_1  36 TDHTGLMLWPGRLAVCNWLAS--------VELRGKRLLELGAGCAACSCVAASK-GALQVVSTDCGN-LDVAAINLRRNC-AEQCNIGTQKLRWGLDSPPDT----NFDIIIASDVVYPDVSDENLNAL 149
                  456789999999999999998........5799**************9888888.99*******987.589999999976.9999*********98776665....79**********87665555443 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.1e-07    0.0021     153     231 ..      52     133 ..      48     139 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 6.1e-07
    PF06325.8 153 ealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.kleva.l...lkelpkekadviva 231
                  ++l ++  +g+++l +G+G +  + +aa  ga +vv +D  ++  +va+ N+++N  e+ ++ ++ l   l++ p+ ++d+i+a
  MMETSP0890-20130614|29765_1  52 NWLASVELRGKRLLELGAGCAACSCVAASKGALQVVSTDCGNL--DVAAINLRRNCAEQcNIGTQkLrwgLDSPPDTNFDIIIA 133
                  6899999********************************9875..678899999988877776542311123344699****98 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.2e-07    0.0025      29      85 ..      47     105 ..      46     135 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.2e-07
   PF03602.10  29 realFnilaaeelegarvLDlfaGsGalglEAlSRgaksvvlvekdkkava..vlkenl 85 
                  r a+ n+la+ el+g+r+L+l aG +a ++ A+S ga +vv  ++ +  va   l++n+
  MMETSP0890-20130614|29765_1  47 RLAVCNWLASVELRGKRLLELGAGCAACSCVAASKGALQVVSTDCGNLDVAaiNLRRNC 105
                  66889****99******************************999877666512344554 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   4.6e+03      69      79 ..      25      36 ..       4      52 .. 0.67
   2 !   16.7   0.1   2.1e-06    0.0072       2      89 ..      61     144 ..      60     169 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.4
    PF12847.2 69 erfDavllkg.l 79
                  rfD vll+g  
  MMETSP0890-20130614|29765_1 25 SRFDGVLLNGeT 36
                 349999999822 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 2.1e-06
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDp...seeslelarenaksldleeriellqgdakeelsller..fDavllkg.ltldallal.de 89 
                  gkr+l+lG+G    s ++a++ +  +vv+ D    + ++++l r+       +e++ +  + + + l+  ++  fD++++++ +    ++++ de
  MMETSP0890-20130614|29765_1  61 GKRLLELGAGCAACSCVAASK-GALQVVSTDCgnlDVAAINLRRNC------AEQCNIGTQKLRWGLDSPPDtnFDIIIASDvV----YPDVsDE 144
                  799*****************5.9999****9844444444444444......5999999999944444444466******9966....5555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.62
# Mc/sec: 1059.04
//
Query:       MMETSP0890-20130614|29775_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   34.9   3.0    1.5e-07   31.4   0.1    2.6  2  PF13704.1 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.1e-11   1.5e-07       4      87 ..       3     111 ..       1     114 [. 0.63
   2 !    3.3   0.3    0.0069        94       9      77 ..     115     191 ..     114     195 .. 0.63

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.1e-11
    PF13704.1   4 aaflpewlahhralgfdriliydndstDgt......aeilkrlpd..vkllrhd............dpy...ederrqvelrka...lakr.yaeadwvlvlDaDEflvlp 87 
                  a++l++++++h+a+gf+r++++ +d +++        e+lk ++d  +++   +            +p+   e ++rqv  ++a   + +   a  +w+l+lD+DE ++++
  MMETSP0890-20130614|29775_1   3 AHVLLSFVRWHLAIGFERLYLFFDDFCPKIvgwdelKEMLKSIKDgeIRVECYRrgeidwkrnekfSPFvdtEVQARQV--LNAeyaYVQAmTAGLRWLLHLDIDEAFYVS 111
                  799******************9999987766665558999998773333333335666665555553334222233332..222222222202345**********88765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0069
    PF13704.1   9 ewlahhralgfdriliydndstDgtaeilkr.....lpdvkllrhddpyederrqvelrka...lakryaeadwvlv 77 
                  e+++h  +l++d+i  ++ ++  g +e+  +      + v+l+r+++   ++ + ++ +       +r ++ +++l+
  MMETSP0890-20130614|29775_1 115 EFVRHFAQLDADNIGHCTYANHEGVPEYTTHetidyFAHVTLFRVNHLCPQGDMNANIQESfayWKQRTRHSQFLLC 191
                  89***********9999999999999888554444357788887776554444444333331113334445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:01.03
# Mc/sec: 935.28
//
Query:       MMETSP0890-20130614|29796_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-79  265.1   0.0    7.1e-79  264.7   0.0    1.1  1  PF00883.16 Cytosol aminopeptidase family, catalytic domain


Domain annotation for each model (and alignments):
>> PF00883.16  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   5.2e-83   7.1e-79      46     307 ..      38     309 ..      27     313 .. 0.89

  Alignments for each domain:
  == domain 1    score: 264.7 bits;  conditional E-value: 5.2e-83
                  TT---HHHHH---..-S--EEEEEEE----TS--..EEEE-----EE--------STTGGGGGG-----HHHHHHHHHHHHTT-SS-EE--EEE-EE-----------EEE-----EEE-S-TT----HHHHHHHHHHGGG--SEEEEEE-----HHHH-----B-EEES-HHHHHHHHHHHHH----BEEE---HHHHHHHH-SSSSEE-----S----HHHHHHHHTT--..........-.S..EEEEE-------SSSST--------HH CS
   PF00883.16  46 lgmgallaVakgs..eneprlvvleykgkkseekkklaLvGKgitfDsGGlsiKpaasmeemkaDmgGaaavlgalkalaklklevnvvavvalteNlisgkaqkpgdvltalnGktvevnNTDAEGRLvLaDalvyakelkaeaiidvaTLTGavvvalgeeitgifsnsdelakelikaaeesgekvwrlpleeeykkqlkskvAdlaNigkaegagaitAalFlkefve..........ekevkwlHlDiagtaekekkkaskgatGvgvr 307
                  +++  l+aV++++   +eprl +le+   +  ++ ++ ++GKg+tfD+GGl+iKp++ m +mk+DmgGaa  l+ + ++++ kl+ n+v++++++eN isg + +pgdvlta+ G t ev NTDAEGRL+LaD lv ++e k+e i+d+aTLTGa  valg+e+ ++f n d+la el++ + + +++vwrlpl  +y+++l+skvAdl+Nig+ +++gaitAal+l++f++          ++  +w+HlD+ +   ++k   ++g   +g r
  MMETSP0890-20130614|29796_1  38 QEYPQLYAVGRAAgaGREPRLAKLEWGLDN--AAATIYVLGKGVTFDTGGLNIKPGNAMLSMKKDMGGAAHALALADMIMSSKLDLNLVVLLGCAENSISGPSFRPGDVLTARGGITTEVLNTDAEGRLILADMLVESAEAKPELIVDFATLTGAGRVALGTEVPALFCNRDDLALELQTLSGTIHDQVWRLPLVAAYNNELESKVADLKNIGNGAYGGAITAALYLQKFIQprpseeddskQEAPPWIHLDLMAFNPTSKPGRPEGGEAMGLR 309
                  56778999987665489*********9998..6678**************************************************************************************************************************************************************************************************96333322221122357*****9887777766666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 1057.02
//
Query:       MMETSP0890-20130614|29805_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-21   75.6   0.0    7.3e-21   75.0   0.0    1.3  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   5.3e-25   7.3e-21      56     210 ..     168     328 ..     131     329 .. 0.86

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 5.3e-25
                  GGTEEEE---HHHHHHHHHHHH----SEEE...........EEEEE..E---S-----E.EEE-GGGTS-EE----EE-EEEESS-B-S----EEEE---------.........................-EEE----..............----........ CS
    PF05721.8  56 eksinkvghflhprkvadlvrailgqdvyva........avlqsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae..ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                  ++   +  h+l p  va+lvr+ l  dv++a         v++s++   +k+p++  +  ++HqDs+++ ++p  + v++wial+da+e +Gclr+ P SH+ +   ++    + ++ a+    ++ +++++   p+++ +G++ l+   ++H s +N+s + R 
  MMETSP0890-20130614|29805_1 168 DSPLRFKLHLLIP-QVAQLVRSPLILDVVQAylglssniLVWSSDL--VAKAPSSRQQF-TPHQDSAYAGITPALNGVTAWIALTDAPEASGCLRVFPDSHLHGSLRHASAQNDGNMLAFgqTIPEFEQQQQDSLPLPLIQGQCSLHTLQTVHFSQPNTSRHRRI 328
                  5566778889999.99999999999999988999999998899999..*****999988.*************9*****************************77777766666677666876666677888899***************************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.67
# Mc/sec: 1430.66
//
Query:       MMETSP0890-20130614|29809_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-22   78.3   0.0    5.5e-22   78.0   0.0    1.1  1  PF12689.2 Acid Phosphatase


Domain annotation for each model (and alignments):
>> PF12689.2  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0     4e-26   5.5e-22       5     159 ..       1     183 []       1     183 [] 0.84

  Alignments for each domain:
  == domain 1    score: 78.0 bits;  conditional E-value: 4e-26
                  EEEE-STTTSSSS-TTTSS-S-EEE----........-EEE----EE---TTHHHH---TTT...----EEEEE--S--...---HHHHHHTT--..............--ESE.EEE--.....-.-HHHHHHHHHHH----GGGEEEEES-HHHHHH---.---EEEE---...---HHHH CS
    PF12689.2   5 livFDLDyTLWpfevdtlvsaplkkekkks.......evvDrsgeelslypdveeiLeelke...kgvklavASrtdap...dlArelLklLein....eakekekklldvfda.veiyp.....g.sktkhfkkiqkktgieyeemlFFDdearnievvsk.lgvtfvlvkd...Gltreel 159
                  ++v DLD+++W++e++tl ++p ++   +          v +  e+++++p + ++L+e+ +    +++l vAS++d+p   ++A+ +L+ Le+      ++   + + + fd  v i++     + ++ +hf  ++ +tg++ye m+FFDd ++  ++    +++  v++++   Gl+ +e+
  MMETSP0890-20130614|29809_1   1 MVVLDLDDCVWTPEMYTLDEMPSTPIYGDLnglgdgvIGVKSGYETIRMFPGALQALQECYQgmwGDMRLGVASSADTPraaEIAQAALRILEVVpgitIRDVLARGWDEGFDGnVWIGRtpplsSdKSRTHFPLLRDATGVPYEGMVFFDDSNWSDHCHMVtMNCPGVVTQRtprGLQYSEW 183
                  69****************9999999988877778854223688899**************999999*************66667777777777779998888899999****9978887766665247789************************9988776688888888666669998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       202  (0.0147747); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.91
# Mc/sec: 481.90
//
Query:       MMETSP0890-20130614|29812_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-21   74.5   0.1    4.5e-21   74.2   0.0    1.1  1  PF01521.15 Iron-sulphur cluster biosynthesis
  ------ inclusion threshold ------
      0.081   12.6   0.1       0.14   11.9   0.0    1.3  1  PF09176.6  Methylene-tetrahydromethanopterin dehydrogenase, N-terminal


Domain annotation for each model (and alignments):
>> PF01521.15  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   6.6e-25   4.5e-21       3      90 ..      18     108 ..      16     110 .. 0.93

  Alignments for each domain:
  == domain 1    score: 74.2 bits;  conditional E-value: 6.6e-25
   PF01521.15   3 lteaAakklkelleleeeekalRlgVkygGcsGfsyglkle...neaeeddevleqdgvtvvvdekslpylegveldfveelegsgfkfsn 90 
                  +t aAak++  l  + +e ++lRlgV+ gGcsGf+y+++ e    + +edd v+  dg  vvvde+sl++++g+++d++ee+  s f + n
  MMETSP0890-20130614|29812_1  18 VTAAAAKRIAVLKTNDGEASRLRLGVDGGGCSGFQYTFTTEaatAKLAEDDSVFSRDGHDVVVDETSLEFVRGATVDYQEEMIRSAFVVIN 108
                  899999999999999988888********************999999**************************************998755 PP

>> PF09176.6  Methylene-tetrahydromethanopterin dehydrogenase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05      0.14       6      64 ..      41     103 ..      39     112 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2e-05
    PF09176.6   6 valDaGadeilpYgnveleevealvq.daiFsRgpkdlk..rtai.fiGGkdvalaldlleaa 64 
                  +++D+G  + ++Y+  +++  ++l + d +FsR ++d++  +t++ f+ G  v   ++++++a
  MMETSP0890-20130614|29812_1  41 LGVDGGGCSGFQYTFTTEAATAKLAEdDSVFSRDGHDVVvdETSLeFVRGATVDYQEEMIRSA 103
                  6899**************99999986269*******97533677779****999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.82
# Mc/sec: 391.60
//
Query:       MMETSP0890-20130614|29815_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-14   53.4   5.9    1.3e-14   53.4   4.1    2.3  2  PF13639.1  Ring finger domain
    1.8e-10   40.3   3.7    1.8e-10   40.3   2.6    2.0  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.1e-07   30.3   2.8    2.1e-07   30.3   2.0    2.5  3  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    5.7e-07   29.4   6.2    5.7e-07   29.4   4.3    2.7  2  PF12678.2  RING-H2 zinc finger
    3.1e-06   26.6   4.9    8.9e-06   25.1   3.4    1.9  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.011   15.3   2.7      0.011   15.3   1.9    2.2  1  PF00628.24 PHD-finger
      0.013   15.1   3.7      0.013   15.1   2.5    2.5  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
      0.022   14.6   4.4      0.068   13.1   3.1    1.9  1  PF12906.2  RING-variant domain
      0.056   12.9   1.0       0.13   11.7   0.7    1.6  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
       0.12   12.3   2.3       0.14   12.2   0.2    2.0  2  PF13771.1  PHD-like zinc-binding domain
       0.23   11.3   9.6       0.48   10.3   3.0    3.3  3  PF11793.3  FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       2.2   2.8e+03       2       8 ..      20      26 ..      19      33 .. 0.75
   2 !   53.4   4.1   1.1e-17   1.3e-14       3      45 ..     200     242 ..     198     243 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.2
    PF13639.1  2 eCaiCld 8 
                 +C +C+ 
  MMETSP0890-20130614|29815_1 20 DCGVCFG 26
                 7888875 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 1.1e-17
    PF13639.1   3 CaiCldelsegeevvrlp.CgHvfHeeCldewlrssnsCPlCrk 45 
                  C+iCld+l+ +++v +lp CgH+fH+ Cl+ w++ +nsCP C++
  MMETSP0890-20130614|29815_1 200 CSICLDDLQ-ARRVLTLPnCGHTFHAACLSPWITAHNSCPFCKR 242
                  ********6.79******************************97 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.8   4.7e+03       3       9 ..      19      25 ..      17      27 .. 0.76
   2 !   40.3   2.6   1.5e-13   1.8e-10       2      46 .]     197     242 ..     196     242 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.8
    PF13923.1  3 fsCpiCl 9 
                 + C +C+
  MMETSP0890-20130614|29815_1 19 DDCGVCF 25
                 5699997 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.5e-13
    PF13923.1   2 rfsCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiCrn 46 
                  + +C+iCl++l+    ++l +CgH ++  C++ w++  +++CP+C++
  MMETSP0890-20130614|29815_1 197 DAICSICLDDLQArrVLTLPNCGHTFHAACLSPWITA-HNSCPFCKR 242
                  568********8864445567****************.*******96 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.3       2.7   3.3e+03       5      13 ..       8      16 ..       5      30 .. 0.53
   2 ?   -2.2   0.1       2.4     3e+03       4      10 ..      20      26 ..      16      34 .. 0.78
   3 !   30.3   2.0   1.7e-10   2.1e-07       2      48 ..     197     245 ..     196     247 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.7
    PF13920.1  5 CvvClerea 13
                 C vC   ++
  MMETSP0890-20130614|29815_1  8 CGVCDGGNQ 16
                 555554333 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.4
    PF13920.1  4 tCvvCle 10
                  C vC+ 
  MMETSP0890-20130614|29815_1 20 DCGVCFG 26
                 6888875 PP

  == domain 3    score: 30.3 bits;  conditional E-value: 1.7e-10
    PF13920.1   2 kktCvvCle..readvlllp.CgHlclCeeCaerllkrkkkCpiCrspie 48 
                  +  C +Cl+  + ++vl lp CgH  + ++C + ++  +++Cp+C+++i 
  MMETSP0890-20130614|29815_1 197 DAICSICLDdlQARRVLTLPnCGHT-FHAACLSPWITAHNSCPFCKRSIL 245
                  567******555788988877****.*********************995 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.8       1.6   1.9e+03      18      27 ..       4      13 ..       1      38 [. 0.74
   2 !   29.4   4.3   4.6e-10   5.7e-07      18      75 .]     195     241 ..     169     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.6
    PF12678.2 18 sednCaiCrn 27
                 ++dnC++C  
  MMETSP0890-20130614|29815_1  4 VVDNCGVCDG 13
                 6899999964 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 4.6e-10
    PF12678.2  18 sedn.CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                  ++d  C iC  +l          +   +  + + +CgH FH  C+s W++ +++CP+c+
  MMETSP0890-20130614|29815_1 195 ENDAiCSICLDDL----------Q--ARRVLTLPNCGHTFHAACLSPWITAHNSCPFCK 241
                  2233699999888..........3..345677889***********************6 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   3.4   7.1e-09   8.9e-06       1      41 []     200     240 ..     200     240 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7.1e-09
                  -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                  C+iCl+ ++     +l +C+H+f+ +C++ ++    +++CP C
  MMETSP0890-20130614|29815_1 200 CSICLDDLQARRvlTLPNCGHTFHAACLSPWIT--AHNSCPFC 240
                  ******999988889999***************..8999**** PP

>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.9   8.8e-06     0.011       1      50 [.     199     242 ..     199     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 8.8e-06
                  SBTTTTCTCTTS-EEEBSSSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
   PF00628.24   1 rCkiCgesdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCke 50 
                  +C+iC ++ +  +++   +C+++fH++Cl++  +  +       C+ Ck+
  MMETSP0890-20130614|29815_1 199 ICSICLDDLQARRVLTLPNCGHTFHAACLSPWITAHN------SCPFCKR 242
                  6******9999999999**************988333......4999986 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.5       2.6   3.2e+03      33      51 ..       9      27 ..       3      39 .. 0.60
   2 ?   15.1   2.5   1.1e-05     0.013      46      80 ..     212     243 ..     182     247 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.6
    PF12861.2 33 GtcpsckfpGddcplvlGk 51
                 G+c   +   ddc + +G+
  MMETSP0890-20130614|29815_1  9 GVCDGGNQDLDDCGVCFGS 27
                 4444445555555555554 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.1e-05
    PF12861.2  46 plvlGkckhnfhlhcilkwletetskglcpmcrqt 80 
                   l l +c h+fh+ c+  w+ +++    cp+c+++
  MMETSP0890-20130614|29815_1 212 VLTLPNCGHTFHAACLSPWITAHN---SCPFCKRS 243
                  466789**************8765...59999876 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1   5.5e-05     0.068       1      47 []     200     240 ..     200     240 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.5e-05
                  ETTTTEE-----..---------TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2   1 CriCleeeeeseplirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                  C iCl++ +  + l  p +C      +H +Cl+ W++  a+++C +C
  MMETSP0890-20130614|29815_1 200 CSICLDDLQARRVLTLP-NCGH---TFHAACLSPWIT--AHNSCPFC 240
                  99*****9998855555.9987...9**********9..77889999 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00011      0.13       5      45 ..     192     232 ..     188     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
                  XXXXXX-B-TTT-S.-SS....EEEES.---EEEHHHHHHHHH CS
    PF13445.1   5 ahfhsifaCpiske.qsteqnpPvvLp.CGhvisrealeklak 45 
                  ++ +++ +C i+ + ++       +Lp CGh++   +l+ +  
  MMETSP0890-20130614|29815_1 192 NQDENDAICSICLDdLQA--RRVLTLPnCGHTFHAACLSPWIT 232
                  56678889******9944..55568*************98876 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00011      0.14      21      66 ..     182     227 ..     168     232 .. 0.83
   2 ?   -2.2   0.0       3.3   4.1e+03      36      46 ..     234     244 ..     228     258 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
    PF13771.1  21 mepvesvekiakerrklkCslCkkkkGaciqCskkkCkrafHvtCa 66 
                   e+ +s  + ++++++  Cs+C     a    +  +C ++fH  C 
  MMETSP0890-20130614|29815_1 182 VETNNSAADSNQDENDAICSICLDDLQARRVLTLPNCGHTFHAACL 227
                  3455667788899999*********9*******************6 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.3
    PF13771.1  36 klkCslCkkkk 46 
                  + +C +Ck++ 
  MMETSP0890-20130614|29815_1 234 HNSCPFCKRSI 244
                  67899999874 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.73     9e+02       4      10 ..      20      26 ..      17      39 .. 0.79
   2 ?   10.3   3.0   0.00039      0.48       5      45 ..     200     235 ..     196     251 .. 0.71
   3 ?    2.5   0.3       0.1   1.3e+02      57      65 ..     236     244 ..     233     261 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.73
                 S-SSS-- CS
    PF11793.3  4 eCgiCya 10
                 +Cg+C+ 
  MMETSP0890-20130614|29815_1 20 DCGVCFG 26
                 8****96 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00039
                  -SSS--SS--------B--S-TT----B-SGGGHHHHHHHH CS
    PF11793.3   5 CgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslk 45 
                  C+iC+         +  +   ++C+++fHaaCL  W+   +
  MMETSP0890-20130614|29815_1 200 CSICLDDLQ-----ARRVLTLPNCGHTFHAACLSPWITAHN 235
                  555554333.....334445589*************98755 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.1
                  --TTT-S-- CS
    PF11793.3  57 eCPyCkkki 65 
                  +CP+Ck+ i
  MMETSP0890-20130614|29815_1 236 SCPFCKRSI 244
                  577777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       765  (0.0559538); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.86
# Mc/sec: 1042.14
//
Query:       MMETSP0890-20130614|29827_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00036   19.9   4.5      0.067   12.6   0.1    3.4  3  PF01344.20 Kelch motif
  ------ inclusion threshold ------
      0.073   13.1   0.8        2.5    8.2   0.0    3.0  3  PF13415.1  Galactose oxidase, central domain
       0.11   12.4   1.6        1.7    8.7   0.0    3.0  4  PF07646.10 Kelch motif
       0.51   10.4   2.4        3.9    7.7   0.1    3.3  3  PF13964.1  Kelch motif


Domain annotation for each model (and alignments):
>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.077   2.6e+02       2      12 ..      60      70 ..      59      71 .. 0.89
   2 !   12.6   0.1     2e-05     0.067      17      41 ..     188     215 ..     187     216 .. 0.94
   3 !    6.0   0.0    0.0022       7.6       8      31 ..     396     430 ..     391     431 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.077
                 SSCEEEEEETT CS
   PF01344.20  2 rssagvvvldg 12
                 r ++g++v+++
  MMETSP0890-20130614|29827_1 60 RRNHGCAVIND 70
                 99*******97 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2e-05
                  E---BS...TTS-TTEEEEEETTTTEEE CS
   PF01344.20  17 iGGrdg...dtnalnsVerYDpvtntWe 41 
                  +GG dg   ++++l++V +YD+ ++ W 
  MMETSP0890-20130614|29827_1 188 FGGTDGshdYGTFLRTVSCYDLNSKLWF 215
                  8************************996 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0022
                  EEETTEEEEE---BS...........TTS-TTEEE CS
   PF01344.20   8 vvldgkiYviGGrdg...........dtnalnsVe 31 
                  +  d++++ +GGr g           d ++l+++e
  MMETSP0890-20130614|29827_1 396 CRSDDYVFTCGGRKGgqkgakygsgrDKQNLRDCE 430
                  6689***********88888888888888888887 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.077   2.6e+02      38      49 .]      57      68 ..      43      68 .. 0.89
   2 ?    8.2   0.0   0.00072       2.5       6      43 ..     187     227 ..     184     233 .. 0.86
   3 ?   -2.9   0.1       2.3   7.8e+03       1      14 [.     399     411 ..     399     415 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.077
    PF13415.1 38 PppRaghtatai 49
                 P++R++h++++i
  MMETSP0890-20130614|29827_1 57 PSGRRNHGCAVI 68
                 99*******986 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00072
    PF13415.1   6 vfGGlgddg..qtrlndvyvldldtntweei.gslPppRag 43 
                   fGG ++++  +t+l +v  +dl++  w +  ++lP++  +
  MMETSP0890-20130614|29827_1 187 TFGGTDGSHdyGTFLRTVSCYDLNSKLWFKPfANLPQGLDH 227
                  59****85567*****************9999***998765 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.3
    PF13415.1   1 gdelyvfGGlgddg 14 
                  +d+++  GG+ + g
  MMETSP0890-20130614|29827_1 399 DDYVFTCGGRKG-G 411
                  5899999*9983.4 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.1   1.1e+04       2      15 ..      60      73 ..      59      75 .. 0.81
   2 ?    8.7   0.0   0.00049       1.7      13      44 ..     162     216 ..     154     217 .. 0.84
   3 ?   -3.3   0.1         3     1e+04      10      21 ..     310     322 ..     304     329 .. 0.64
   4 ?    1.3   0.0      0.11   3.7e+02       2      20 ..     390     408 ..     389     425 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.1
   PF07646.10  2 ryghsavvpggkiy 15
                 r  h ++v++++ +
  MMETSP0890-20130614|29827_1 60 RRNHGCAVINDRHI 73
                 88999999999865 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00049
   PF07646.10  13 kiyvvGGa.......................htdngllsssdlnvldpeknvWee 44 
                  k+++ GGa                       ++++++ +++++ ++d++++ W +
  MMETSP0890-20130614|29827_1 162 KLHIAGGAcaalalpihkkrlpaictfggtdGSHDYGTFLRTVSCYDLNSKLWFK 216
                  677777777777777777777777777777***********************86 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 3
   PF07646.10  10 pggkiyvvGGa.h 21 
                   g  i+ +GG+ +
  MMETSP0890-20130614|29827_1 310 HGRYIVQYGGVfY 322
                  5677888899843 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.11
   PF07646.10   2 ryghsavvpggkiyvvGGa 20 
                  r  + ++ +++ ++ +GG+
  MMETSP0890-20130614|29827_1 390 RFATQTCRSDDYVFTCGGR 408
                  667788999*********9 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.38   1.3e+03       9      23 ..     158     172 ..     157     188 .. 0.79
   2 ?    7.7   0.1    0.0011       3.9      15      40 ..     186     214 ..     183     222 .. 0.90
   3 ?   -1.4   0.1       0.8   2.7e+03      11      22 ..     399     410 ..     395     418 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.38
    PF13964.1   9 svggkiyifGGytns 23 
                  s g k++i+GG++++
  MMETSP0890-20130614|29827_1 158 SRGPKLHIAGGACAA 172
                  66789******9975 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
    PF13964.1  15 yifGGytns...gkylndvlvydpetksW 40 
                    fGG ++s   g++l++v +yd+ +k W
  MMETSP0890-20130614|29827_1 186 CTFGGTDGShdyGTFLRTVSCYDLNSKLW 214
                  568999999999***************99 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.8
    PF13964.1  11 ggkiyifGGytn 22 
                  +++++ +GG+++
  MMETSP0890-20130614|29827_1 399 DDYVFTCGGRKG 410
                  789999***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.42s 00:00:01.29 Elapsed: 00:00:01.12
# Mc/sec: 1053.97
//
Query:       MMETSP0890-20130614|29836_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-14   53.4   0.0    2.2e-14   53.3   0.0    1.0  1  PF00481.16 Protein phosphatase 2C
    4.6e-10   39.1   0.6      5e-10   39.0   0.4    1.0  1  PF13672.1  Protein phosphatase 2C
  ------ inclusion threshold ------
      0.015   14.1   0.0       0.02   13.7   0.0    1.1  1  PF03331.8  UDP-3-O-acyl N-acetylglycosamine deacetylase
      0.084   12.1   0.0       0.14   11.3   0.0    1.4  1  PF13530.1  Sterol carrier protein domain


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   6.3e-18   2.2e-14       7     127 ..       5     121 ..       1     123 [] 0.85

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 6.3e-18
                  TCCCCCHHHHHHHHH----SSTHCCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX...XXGGHCHHHHHH.HHCHHHHHHCCS..HTT---EEEEEEESSSEEEEEEE---EEEEE CS
   PF00481.16   7 elqgfrksmedahialknlekssgkssvaffavfdghggreaakyarehleeilkerksflele..klekalrksfladtdeelksseant.epsksGstavvalirgqklyvAnvGDSravLc 127
                  ++qgfr+smedah++ +         + +++avfdghgg++++++a++ l+  ++e+   ++ +     +a+r++ l+  ++el  ++ +  + ++ Gsta ++ i +q++   ++GD+rav++
  MMETSP0890-20130614|29836_1   5 SVQGFRSSMEDAHVLAD------VGHNTRLLAVFDGHGGSRVSDLAARVLKARVEEQWPSSPKAipASAEAVRRALLS-VENELGEENSRLkSVEHTGSTAACVTIDPQQISSCWLGDTRAVIA 121
                  789***********999......557899**********************655555555554467778899999999.777777766665589****************************96 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.4   1.5e-13     5e-10      11     122 ..      12     120 ..       4     123 .] 0.82

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.5e-13
    PF13672.1  11 pcqDafa.iredsdgwllaVaDGaGsakrSdeGsrlaveaagealeelleeeeeqeeallrailneilaevklkaeaeaqqeelkdyatTlllavitpgeivffqiGDgaivv 122
                    +Da+  + + ++ +llaV DG+G  + Sd ++r++   + e+  ++ ++  +++ea++ra+l  +++e     e++++ ++++  ++T  ++ i+p +i ++++GD+++v+
  MMETSP0890-20130614|29836_1  12 SMEDAHVlADVGHNTRLLAVFDGHGGSRVSDLAARVLKARVEEQWPSSPKAIPASAEAVRRALL-SVENE---LGEENSRLKSVEHTGSTAACVTIDPQQISSCWLGDTRAVI 120
                  567888867777788899**************99999999999999999888877666666665.44444...477777888****************************986 PP

>> PF03331.8  UDP-3-O-acyl N-acetylglycosamine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.7e-06      0.02      46      92 ..      60     108 ..      53     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.7e-06
                  -EEEESSGGG--BESSSE..BEE----EEB--HHHHHHHHHCT--SEEE CS
    PF03331.8  46 kvkipaklenvvdtklsT..tlgkedaristvEHllaalaaleidnlki 92 
                   ++ipa++e v+ + ls   +lg+e++r++ vEH  ++ a + id  +i
  MMETSP0890-20130614|29836_1  60 PKAIPASAEAVRRALLSVenELGEENSRLKSVEHTGSTAACVTIDPQQI 108
                  578*************96337*******************999997776 PP

>> PF13530.1  Sterol carrier protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05      0.14     135     187 ..      75     119 ..      60     123 .] 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.1e-05
    PF13530.1 135 LeVtDallpenngrfrlevadggasveete.eaadleldvaeLaslylGyesaa 187
                  L+V+++l++en      +      sve t  +aa +++d ++ +s++lG+++a+
  MMETSP0890-20130614|29836_1  75 LSVENELGEENSRL---K------SVEHTGsTAACVTIDPQQISSCWLGDTRAV 119
                  56666666555433...3......55566558899****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.31s 00:00:00.70 Elapsed: 00:00:01.13
# Mc/sec: 258.55
//
Query:       MMETSP0890-20130614|29838_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-08   35.2   1.6      1e-08   35.2   1.1    2.4  2  PF00505.14 HMG (high mobility group) box
  ------ inclusion threshold ------
        0.1   11.3   2.2       0.12   11.1   0.1    1.8  2  PF12137.3  RNA polymerase recycling family C-terminal
        1.5    8.7   5.6       0.69    9.8   1.9    1.8  2  PF08738.5  Gon7 family
        1.8    8.3  13.9        1.7    8.4   5.4    2.0  2  PF03938.9  Outer membrane protein (OmpH-like)
        2.1    8.3   7.9       0.56   10.1   1.4    2.2  2  PF04158.9  Sof1-like domain


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.9     0.034        94      36      53 ..      47      64 ..      22      70 .. 0.73
   2 !   35.2   1.1   3.6e-12     1e-08       1      68 [.      77     145 ..      77     146 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.034
                 HHTTTTS-HCCHHHHHHH CS
   PF00505.14 36 gekWkelseeeKkpYeek 53
                 +ek+k+++ ++K+ Y + 
  MMETSP0890-20130614|29838_1 47 EEKFKNEQNSKKRNYSAY 64
                 367899999999888765 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 3.6e-12
                  ---S--HHHHHHHHHHHHHHHHST.TS-HHHHHHHHHHTTTTS-HCCHHHHHHHHHHHHHHHHHHHGGG CS
   PF00505.14   1 pkRplsaFflfskeqraklkaenP.dlkvaeiskklgekWkelseeeKkpYeekaekekeeyekekpeY 68 
                  pk+p++a   f++ + +kl+++ P d +++e++++l e++++ ++++ ++ ++ aek+k++yeke ++ 
  MMETSP0890-20130614|29838_1  77 PKKPRTAVRCFMRRNVRKLREKYPpDTSNTELKRILTEMFRQAPPDVHAEMKRLAEKDKARYEKELRDR 145
                  8*******************99863777*************************************9875 PP

>> PF12137.3  RNA polymerase recycling family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.12   3.3e+02     273     298 ..      32      57 ..       8      68 .. 0.69
   2 ?   11.1   0.1   4.3e-05      0.12     233     298 ..      80     145 ..      76     149 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.12
    PF12137.3 273 vkalrkeiekllkkaeklaeeqleei 298
                   +al+ke+ k+l++ e++ ++++++ 
  MMETSP0890-20130614|29838_1  32 CAALQKELDKMLAEREEKFKNEQNSK 57 
                  34567777777777777776666554 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4.3e-05
    PF12137.3 233 pptpirllldekgkdlsekvsfeklnkqlkkvkkktarklvkalrkeiekllkkaeklaeeqleei 298
                  p t++r+++ ++ ++l ek   ++ n +lk++  ++ r++   +++e+++l +k ++  e++l+  
  MMETSP0890-20130614|29838_1  80 PRTAVRCFMRRNVRKLREKYPPDTSNTELKRILTEMFRQAPPDVHAEMKRLAEKDKARYEKELRDR 145
                  899*****************************************************9999998865 PP

>> PF08738.5  Gon7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.9   0.00025      0.69      53      92 ..      22      61 ..       9      73 .. 0.83
   2 ?   -0.5   0.0      0.41   1.1e+03      59      59 ..     108     108 ..      61     147 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00025
    PF08738.5 53 vtyLseLRaslttlQddiNefLTermeedkkkeakkakek 92
                 +++L e Ra+ ++lQ ++ + L er e+ k+++++k ++ 
  MMETSP0890-20130614|29838_1 22 NAQLLEERAQCAALQKELDKMLAEREEKFKNEQNSKKRNY 61
                 4677888************************999987665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.41
    PF08738.5  59 L 59 
                  L
  MMETSP0890-20130614|29838_1 108 L 108
                  1 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.4   0.00064       1.7      46     100 ..      13      69 ..       5      76 .. 0.85
   2 ?    3.6   0.2     0.019        52      47      89 ..     103     146 ..      86     149 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00064
    PF03938.9  46 kekqqelqakkkel..qkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlq 100
                  +++++ +++ ++ l  +++ ++lq+e +++ ae e++ ++e+++k++++ aya +++
  MMETSP0890-20130614|29838_1  13 EQYDEAIATNAQLLeeRAQCAALQKELDKMLAEREEKFKNEQNSKKRNYSAYAGNYE 69 
                  566666777777777788999*******************************99886 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.019
    PF03938.9  47 ekqqelqakkkel.qkeqknlqseraqlsaeaekakeeelqake 89 
                  ++++el++   e+ ++   ++ +e+++l+++++++ e+el  ++
  MMETSP0890-20130614|29838_1 103 TSNTELKRILTEMfRQAPPDVHAEMKRLAEKDKARYEKELRDRN 146
                  66667777777776666678889999999999999999998766 PP

>> PF04158.9  Sof1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.087   2.4e+02      57      74 ..      42      59 ..      12      81 .. 0.66
   2 ?   10.1   1.4   0.00021      0.56      23      72 ..      94     148 ..      90     149 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.087
    PF04158.9 57 ekeakkrkeenrrkhskk 74
                 +++ ++ k +n+++  k 
  MMETSP0890-20130614|29838_1 42 MLAEREEKFKNEQNSKKR 59
                 333333333333333222 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00021
    PF04158.9  23 kLkeky...khmpeikrIarh..rhvPkaikkakkikreekeakkrkeenrrkhs 72 
                  kL+eky    ++ e+krI +   r+ P  ++ ++k+  e+ +a+  ke + r++s
  MMETSP0890-20130614|29838_1  94 KLREKYppdTSNTELKRILTEmfRQAPPDVHAEMKRLAEKDKARYEKELRDRNNS 148
                  8999995555899*****87666***************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1331  (0.0973523); expected 273.4 (0.02)
Passed bias filter:                      781  (0.057124); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 495.46
//
Query:       MMETSP0890-20130614|29837_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   14.2   0.0       0.19   10.2   0.0    2.1  2  PF04041.8 Domain of unknown function (DUF377)


Domain annotation for each model (and alignments):
>> PF04041.8  Domain of unknown function (DUF377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0    0.0052        71      35      76 ..      92     133 ..      76     150 .. 0.81
   2 ?   10.2   0.0   1.4e-05      0.19      46      90 ..     173     217 ..     161     220 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0052
                  EEEEE----..EE-EEEEEETTS-E.EEE--.-B--------- CS
    PF04041.8  35 pavvlvekelRvvmlYrkevediaslrigle.dssdGikftke 76 
                  pav+  +k+ R  + Y +    +++  +gl+ ds +Gi+ftk 
  MMETSP0890-20130614|29837_1  92 PAVI-DDKNSRRFLSYQALDLRTRKHAVGLAqDSGNGIRFTKL 133
                  7888.555558889999999999999***9736889***9974 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.4e-05
                  EE-EEEEEETTS-E.EEE---B----.-----SS---EE-----B- CS
    PF04041.8  46 vvmlYrkevediaslrigledssdGi.kftkepepvvlpevkiell 90 
                  + m Y +   +  +  igl+ s dGi  + k pepv+ p ++   +
  MMETSP0890-20130614|29837_1 173 FLMWYEALNREGEH-SIGLATSMDGIsDWIKLPEPVFRPSSHAQAW 217
                  66666666655555.9*********6269999*******9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       149  (0.0108982); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.67
# Mc/sec: 801.17
//
Query:       MMETSP0890-20130614|29830_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-52  178.2   0.0    2.1e-52  177.7   0.0    1.2  1  PF00069.20 Protein kinase domain
    8.6e-23   80.6   0.0    1.3e-22   80.0   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.028   14.0   0.3      0.091   12.3   0.2    1.8  1  PF01636.18 Phosphotransferase enzyme family
      0.063   12.5   0.1       0.14   11.4   0.0    1.5  1  PF01163.17 RIO1 family
       0.09   11.2   0.0       0.15   10.5   0.0    1.3  1  PF10140.4  WXG100 protein secretion system (Wss), protein YukC


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   7.9e-56   2.1e-52      81     260 .]       2     173 ..       1     173 [. 0.95

  Alignments for each domain:
  == domain 1    score: 177.7 bits;  conditional E-value: 7.9e-56
                  SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20  81 eggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                   +g+lfd++ ++g+l  +e+++++ qi++g+ey+H + i+HrDLKpeN+Lldk++++kiaDFGl+++  +++e l+t +g+++Y+APEv+ ++ +++++vDvWs+Gvily ll+g+lpf++e   +  +l++ki+++ ++ ++  s    + ++dli ++l  dp kR+t+ e+  h w+
  MMETSP0890-20130614|29830_1   2 SNGELFDYIVSKGRLAPDEARHFFHQIISGVEYCHFHDIVHRDLKPENLLLDKDNNIKIADFGLSNV-MRDGEFLRTSCGSPNYAAPEVISGHLYAGPEVDVWSCGVILYALLCGSLPFDDE---SIPNLFKKIKSGMYSLPSHLS----QLARDLIPRMLVVDPMKRITVPEVRAHAWF 173
                  689**************************************************************98.9*****************************************************...777777777777777776655....88***************************8 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   4.7e-26   1.3e-22      84     255 ..       2     167 ..       1     170 [. 0.87

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 4.7e-26
                  -B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEE.HHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
   PF07714.12  84 kgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkel 255
                  ++G+L +++ +k   +l  ++  +f  qi +G+ey + +++vHrdL   N Ll++++ +ki+DfGL++ + +d +   ++ +  + ++ apE+++ + +   + DvWs Gv+l+ +++ g+ p+ + s  ++++++k+g   + p++ ++   +l+ + +  +p +R t  e+
  MMETSP0890-20130614|29830_1   2 SNGELFDYIVSK--GRLAPDEARHFFHQIISGVEYCHFHDIVHRDLKPENLLLDKDNNIKIADFGLSNVM-RDGEFL-RT-SCGSPNYAAPEVISGHLYAgPEVDVWSCGVILYALLC-GSLPFDDESIPNLFKKIKSGM-YSLPSHLSQLARDLIPRMLVVDPMKRITVPEV 167
                  689999999997..99****************************************************99.444433.33.345679*********9986369**************9.89***************9876.45688889999999999999999999988776 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.3e-05     0.091     168     195 ..      40      66 ..      38      70 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
                  EB-SS-SGGGEEEETTTTEEEE---TT- CS
   PF01636.18 168 llHgDlhpgNllvdpddgrvgviDfeda 195
                  ++H+Dl+p Nll+d+d++   + Df+++
  MMETSP0890-20130614|29830_1  40 IVHRDLKPENLLLDKDNNIK-IADFGLS 66 
                  79************555444.8888875 PP

>> PF01163.17  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     5e-05      0.14     104     149 ..      19      64 ..       8      73 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5e-05
                  -HHHGCHHHHHHHHHHHHHCS-EEESS-STTSEEEESS.SEEE---T CS
   PF01163.17 104 eeaeelyeeileemrklykeaglvHaDLSeyNvlvded.kvviIDvs 149
                  +ea++ +++i++ ++   + +++vH DL   N+l+d+d ++ i D++
  MMETSP0890-20130614|29830_1  19 DEARHFFHQIISGVEYC-HFHDIVHRDLKPENLLLDKDnNIKIADFG 64 
                  8999********66555.599****************9899999986 PP

>> PF10140.4  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.3e-05      0.15      76     108 ..      38      70 ..       7      77 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.3e-05
    PF10140.4  76 ekrltfilhPenllfdkgltpkiihrGvkeilp 108
                  ++ ++  l Penll+dk+ + ki+ +G+ +++ 
  MMETSP0890-20130614|29830_1  38 HDIVHRDLKPENLLLDKDNNIKIADFGLSNVMR 70 
                  556677799*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.91
# Mc/sec: 866.38
//
Query:       MMETSP0890-20130614|29848_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.83
# Mc/sec: 424.42
//
Query:       MMETSP0890-20130614|29847_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-12   46.5   8.2    4.3e-12   46.0   5.7    1.3  1  PF12923.2 Ribosomal RNA-processing protein 7 (RRP7)


Domain annotation for each model (and alignments):
>> PF12923.2  Ribosomal RNA-processing protein 7 (RRP7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   5.7   3.2e-16   4.3e-12      12     121 ..     103     211 ..      91     214 .] 0.81

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 3.2e-16
    PF12923.2  12 slpdeealqeevdeymekydkreeeakeea..kkesepdeDGfitVtrkkkkkkaglskkkaeeekakekekkkkkkkeledFYrFqirekkkeelaeLrkkFeeDkkkiek 121
                  +++d  a +++++e+++  ++ ++++ e++  ++es pdeDGfitVt k+k  ++  +k++a+ +++++ +++    + + dFYrFq    k+++l+ Lr+  ++Dk++ +k
  MMETSP0890-20130614|29847_1 103 EFMDVRAHENKANEVLALLEADKAAEIERRlqARESGPDEDGFITVTYKRKAVNQNPRKSDAAIKRSRKLNHQVTGAESQDDFYRFQA---KRQRLEALRSAVQADKERAAK 211
                  5889999999**********999999999995666**************888555555555666666666677778888889****96...789999***********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.78
# Mc/sec: 657.46
//
Query:       MMETSP0890-20130614|29852_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 324.01
//
Query:       MMETSP0890-20130614|29857_1  [L=908]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-61  206.8   0.0    4.8e-48  163.5   0.0    4.0  3  PF01231.13 Indoleamine 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> PF01231.13  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   3.5e-52   4.8e-48      10     421 ..      63     450 ..      56     452 .. 0.87
   2 !   19.3   0.0   2.1e-08   0.00028       7     131 ..     492     622 ..     488     656 .. 0.78
   3 !   17.5   0.0   7.2e-08   0.00098     309     367 ..     801     863 ..     763     879 .. 0.77

  Alignments for each domain:
  == domain 1    score: 163.5 bits;  conditional E-value: 3.5e-52
   PF01231.13  10 vsertGFLpeekplerLpdeyyekWeeilknlpsl.........lkakrlResveelpvlstskLkeerelrraylvLsflahaYvwgegekkpaevlPeaiavPllevseklglpPiltYadlvLwNfkkidpsekpleldnlsiietftgtkdeewFylvsvliEaagaealelmlqaldaar.addkrrvtkaLkklaeaikel.skllermeek.......vdpevFYhkiRpylagsknmadaglpeGliYe.gvkeeprkfsGgsaaqSsliqaldilLgveHsatgeekkeeaetaeakakaeFleemrkYmpgkHrefLehlee.vanirelvlkaksee.........elkeaYdaaleaLksfRdkHiqvvtkYIvaqarkkkkeksaklakleeasedesekknakelkGTGgtdlikFLkqvrdeTkea 421
                  v+ ++GFLp+++p e  +d+ + ++ ei++ +p+l         l   r Res  +  v+++ +++ee el   + + s+l  + + ++       ++Pe +a+ +   +++l+  P+l Ya++vL+N+  +dp+ +p+ ++n++++  ftg  deewF+ +++++Eaa+++a+ +m + l +++ +++   +++ L++++++i  + ++ l  m e+       +d   F+h++Rp+++g kn         +i+    +++p +  G+s+a S+l+ +ld++Lgv+ s+++               ++ l++ +k mp +Hr fL +++e   +ir+l+ +a++ +         +l ++++++++ L +fR +H+q+v kYIv ++  +                        +   GTGgt+ +++L +   +T++a
  MMETSP0890-20130614|29857_1  63 VD-KSGFLPSRPPREAPSDDRFCVLSEIVEMVPTLammddsssfLDLIRRRESAFKAAVVALIEIREEDELECVHGLYSYLVCGLIKCG-----VSTIPEYVARGFKMCADRLNRRPMLDYAGCVLYNWALVDPQ-GPVSVENVRMLRRFTGLIDEEWFFKTHLVLEAAAGDAVMAMKEGLLQLEsKNNYVFMIEVLRRIETSIGVVvRDCLPLMFERrgehgalCDYYFFFHRLRPFMSGCKN---------VIFCgIDHDTPLTLPGPSGAMSTLLPCLDAFLGVKNSSSK--------------LSKLLADFSKSMPISHRGFLRKISEqSLSIRTLIIQARKYRksqdtdiveALATQFERCIDLLLDFRWRHLQMVRKYIVEPSGGDA-----------------------SSVAGTGGTAALEYLHEHIADTEAA 450
                  54.79******************************999***998888999999************************************.....899**************************************.************************************************9555559999********997651455555544333336779*****************9.........44541234899**************************996..............7889*******************9963355555554433222233445779999***************************99888.......................2456888888888888888888766 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.1e-08
   PF01231.13   7 dyevsertGFLpeekplerLpdeyyekWeeilknlpsllkakrlResveelpvlstskLkeer..elrraylvLsflahaYvwgegekkpae.......vlPeaiavPllevseklglpPiltYadlvLwNfkk 131
                   ++v+ ++G Lp+++p+  Lp++ ++++e+++ +lp l   +rl ++v++l+  s++k+k+ +  el   ++ L+f+a aY  ++    ++         lP    + +  v++ l+ p  l++ dlv+ N + 
  MMETSP0890-20130614|29857_1 492 LWHVNAENGLLPRRQPV--LPSHGFDHLESVVLRLPYLCVGRRLHAVVQSLQF-SLEKIKQLNidELEGLRVRLAFMAAAYQRCDSVACVNPdippgdtPLPLHFKEVYDFVADLLDRPKRLCFTDLVICNLRM 622
                  589*********99997..9999***************************986.44444333334889999**********88874444333556666666667777777788888888888888888888774 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 7.2e-08
   PF01231.13 309 mpgkHrefLehleeva.nirelvlkaksee...elkeaYdaaleaLksfRdkHiqvvtkYIva 367
                  +p +Hr+fL ++++++ n+ ++  +++  +   +l++aY+ ++++L ++ ++  q+v++Y+  
  MMETSP0890-20130614|29857_1 801 VPTAHRNFLRRVSSIRdNVLRICTSTEPLHhlaRLEAAYNGCVDELLRLCSRRSQLVCRYLPH 863
                  799********999432444444444444458899*************************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.36u 0.36s 00:00:01.72 Elapsed: 00:00:01.12
# Mc/sec: 1942.76
//
Query:       MMETSP0890-20130614|29874_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-10   41.4  47.8    1.6e-05   24.8   7.7    5.1  6  PF07974.8  EGF-like domain
      0.002   18.0   5.9      0.002   18.0   4.1    3.3  3  PF12955.2  Domain of unknown function (DUF3844)
  ------ inclusion threshold ------
      0.017   14.9   3.6      0.017   14.9   2.5    4.6  4  PF00008.22 EGF-like domain
      0.019   14.7  31.3       0.06   13.1   4.7    3.3  3  PF00053.19 Laminin EGF-like (Domains III and V)
      0.024   14.6   5.8      0.024   14.6   4.0    5.6  5  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   3.6     9e-09   2.5e-05       7      32 .]       3      28 ..       1      28 [. 0.94
   2 !   10.1   1.5   0.00022      0.61       1      15 [.      33      44 ..      33      46 .. 0.86
   3 ?    4.5   0.2     0.013        35      21      27 ..      81      87 ..      75      88 .. 0.90
   4 ?   -2.0   0.1       1.4   3.8e+03      26      32 .]     100     106 ..      97     106 .. 0.81
   5 ?   -3.7   0.1       4.6   1.3e+04      22      26 ..     110     114 ..     110     114 .. 0.70
   6 !   24.8   7.7   5.8e-09   1.6e-05       1      32 []     145     173 ..     139     173 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 9e-09
    PF07974.8  7 iCgghGtCvkqcgkCvCdsgyqGktC 32
                 +C++ G+C++  g+C C+ g++G+ C
  MMETSP0890-20130614|29874_1  3 ECSNKGICERASGTCTCYPGFTGDAC 28
                 5********99999************ PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00022
    PF07974.8  1 CsadgliCgghGtCv 15
                 C++d   C+ghG C 
  MMETSP0890-20130614|29874_1 33 CPND---CSGHGRCL 44
                 9964...*******6 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.013
    PF07974.8 21 CvCdsgy 27
                 CvCds++
  MMETSP0890-20130614|29874_1 81 CVCDSSW 87
                 ******9 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 1.4
    PF07974.8  26 gyqGktC 32 
                   ++G +C
  MMETSP0890-20130614|29874_1 100 EWFGYDC 106
                  5999999 PP

  == domain 5    score: -3.7 bits;  conditional E-value: 4.6
    PF07974.8  22 vCdsg 26 
                  +C+sg
  MMETSP0890-20130614|29874_1 110 HCPSG 114
                  68876 PP

  == domain 6    score: 24.8 bits;  conditional E-value: 5.8e-09
    PF07974.8   1 CsadgliCgghGtCvkqcgkCvCdsgyqGktC 32 
                  C+    +C ++G+C+ ++g C+C  g++G++C
  MMETSP0890-20130614|29874_1 145 CQV---DCANRGICDFNTGLCHCFTGHYGADC 173
                  652...4********99*************** PP

>> PF12955.2  Domain of unknown function (DUF3844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   4.4      0.84   2.3e+03      14      33 ..       3      20 ..       1      33 [. 0.71
   2 !   18.0   4.1   7.5e-07     0.002       6      61 ..      26     108 ..      19     113 .. 0.83
   3 ?   -3.7   2.1       4.3   1.2e+04      14      25 ..     148     159 ..     140     174 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.84
    PF12955.2 14 sCsghGecvkkskskkedcy 33
                 +Cs++G c ++s++   +cy
  MMETSP0890-20130614|29874_1  3 ECSNKGICERASGTC--TCY 20
                 7*******9975543..566 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 7.5e-07
    PF12955.2   6 eaceea..TnsCsghGecvkksksk........................kedcyaCkCketvekkksedg.ktvkwgGeaCek 61 
                  +ac+++   n+CsghG+c + ++ +                        +e  y C C+++ e   ++ + ++ +w G++C+ 
  MMETSP0890-20130614|29874_1  26 DACQRRqcPNDCSGHGRCLSIKRMAsmtealplsarttysgnedttrwdQEMIYGCVCDSSWEVGLASGQrQEPEWFGYDCSL 108
                  5666542269********99776667899*******************9889*********9998765554666*******85 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 4.3
    PF12955.2  14 sCsghGecvkks 25 
                  +C ++G c  ++
  MMETSP0890-20130614|29874_1 148 DCANRGICDFNT 159
                  699999997653 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   2.5   6.3e-06     0.017       6      31 ..       4      26 ..       2      27 .. 0.92
   2 ?    8.4   0.4   0.00069       1.9       3      14 ..      34      45 ..      33      52 .. 0.88
   3 ?   -2.0   0.1       1.2   3.2e+03      23      28 ..     110     115 ..     110     117 .. 0.78
   4 ?   -0.5   5.0       0.4   1.1e+03       5      30 ..     148     170 ..     143     172 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.3e-06
                 CSS--EEEEECCTEEEEE--TTCTTT CS
   PF00008.22  6 CsngGtCvdtpgggytCeCpeGytGk 31
                 Csn G+C +      tC+C +G+tG+
  MMETSP0890-20130614|29874_1  4 CSNKGICERAS---GTCTCYPGFTGD 26
                 99999999997...**********96 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00069
                 TTTCSS--EEEE CS
   PF00008.22  3 pnpCsngGtCvd 14
                 pn Cs++G+C++
  MMETSP0890-20130614|29874_1 34 PNDCSGHGRCLS 45
                 689*******97 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.2
                  E--TTC CS
   PF00008.22  23 eCpeGy 28 
                  +Cp+G 
  MMETSP0890-20130614|29874_1 110 HCPSGD 115
                  6**996 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.4
                  TCSS--EEEEECCTEEEEE--TTCTT CS
   PF00008.22   5 pCsngGtCvdtpgggytCeCpeGytG 30 
                   C n+G+C      +  C+C  G  G
  MMETSP0890-20130614|29874_1 148 DCANRGICDFN---TGLCHCFTGHYG 170
                  69999999665...479999888555 PP

>> PF00053.19  Laminin EGF-like (Domains III and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   9.0   0.00038         1       3      33 ..       4      30 ..       2      43 .. 0.82
   2 ?   -2.8   0.0       2.1   5.6e+03       1       4 [.      81      84 ..      77      88 .. 0.63
   3 ?   13.1   4.7   2.2e-05      0.06       5      31 ..     147     173 ..     144     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00038
                 STT-B-CC--B-S----BSBSTTEE---S-E CS
   PF00053.19  3 CnphgsssssCdsstgqClCkenveGrkCdr 33
                 C+++g     C++ +g+C C ++++G+ C+r
  MMETSP0890-20130614|29874_1  4 CSNKG----ICERASGTCTCYPGFTGDACQR 30
                 55555....9*******************85 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
                 S-ST CS
   PF00053.19  1 CeCn 4 
                 C C+
  MMETSP0890-20130614|29874_1 81 CVCD 84
                 4444 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 2.2e-05
                  T-B-CC--B-S----BSBSTTEE---S CS
   PF00053.19   5 phgsssssCdsstgqClCkenveGrkC 31 
                     ++++ Cd++tg C+C  +  G +C
  MMETSP0890-20130614|29874_1 147 VDCANRGICDFNTGLCHCFTGHYGADC 173
                  55555569******************* PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   4.0   8.7e-06     0.024       1      13 []      16      28 ..      16      28 .. 0.96
   2 ?   -2.6   0.2       2.6     7e+03       3       5 ..      32      34 ..      32      35 .. 0.82
   3 ?    2.0   0.2     0.085   2.3e+02       2       8 ..      81      87 ..      80      88 .. 0.86
   4 ?    0.5   0.2      0.27   7.3e+02       3       7 ..     110     114 ..     110     114 .. 0.90
   5 ?   -4.0   3.3         5   1.4e+04       2       4 ..     162     164 ..     161     173 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.7e-06
    PF12661.2  1 kCqCppGyTGdnC 13
                 +C+C pG+TGd C
  MMETSP0890-20130614|29874_1 16 TCTCYPGFTGDAC 28
                 7**********99 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.6
    PF12661.2  3 qCp 5 
                 qCp
  MMETSP0890-20130614|29874_1 32 QCP 34
                 899 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.085
    PF12661.2  2 CqCppGy 8 
                 C+C++ +
  MMETSP0890-20130614|29874_1 81 CVCDSSW 87
                 ***9987 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.27
    PF12661.2   3 qCppG 7  
                  +Cp+G
  MMETSP0890-20130614|29874_1 110 HCPSG 114
                  7**99 PP

  == domain 5    score: -4.0 bits;  conditional E-value: 5
    PF12661.2   2 CqC 4  
                  C+C
  MMETSP0890-20130614|29874_1 162 CHC 164
                  888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      134  (0.00980105); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 699.58
//
Query:       MMETSP0890-20130614|29866_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-55  186.6   0.3    2.1e-53  181.2   0.2    2.1  2  PF02696.9 Uncharacterized ACR, YdiU/UPF0061 family


Domain annotation for each model (and alignments):
>> PF02696.9  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.2   1.5e-57   2.1e-53      53     309 ..     109     362 ..      90     419 .. 0.87
   2 !    3.5   0.0    0.0012        16     442     486 ..     463     507 ..     448     508 .. 0.77

  Alignments for each domain:
  == domain 1    score: 181.2 bits;  conditional E-value: 1.5e-57
    PF02696.9  53 knaldeavqdqekllsGsisplatvysGfqfGsfaaqLGdGrgvllgdvrlkdkesldwqlkGaGltPysrfadGravLrssirevlasealhslGipttralslvllddskarr.....eeqeP..aavlirfaps.hirlGnfellryrhdlekliqLsdyvieeyfaevkiqveddedkydeffrdvvsrvaklvaqWqavGfahGvlntdnmsilGltldyGPfafldkyepsfianhddtakrysfanqPavilWnLqrl 309
                   ++ +e+ ++q ++l+     +a  y G+qfG+fa+qLGdGr + +g+     ++ ++ +lkG+G+t ysr +dG +++rs+ re+la+e lh l ipttr+l l  +d   +r      + + P  + +l rf  +  +r+G++el   r d+  l q+ d+++ ++f+ ++   e  + k  e      +r+a+l a +   Gf hGvlntdn  + G++ld+GPfaf+++ e ++ +n +d ++ry+   q +  +  + +l
  MMETSP0890-20130614|29866_1 109 LDGSNEF-MNQAAMLPQ--WSYASCYGGHQFGVFAGQLGDGRCLTIGE-----RQNYELNLKGSGQTQYSRNGDGLVTFRSAAREFLAAEYLHGLNIPTTRSLALWASDLQAWRAapdgtNYAAPerTGLLARFGTAlSLRFGTLELAAARGDSILLNQIVDFALDTIFS-TSRTGEASS-KRAELVLLTADRTARLAAYFDVFGFVHGVLNTDNFCLAGEALDFGPFAFVET-EYDLSPNLSDRTGRYRRTKQVSAFRSAVAHL 362
                  5667777.778888887..89***************************.....6778999***********************************************9988887522221233456699*****887369******************************.555555555.899999999*****************************************86.66667***********999988776665555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0012
    PF02696.9 442 rasllkkanPllvlrswvleevvdasekdgdtsalkkLyeklrnp 486
                   +  l+  nP++vlr+ v++++++     +d  +++ L e++  p
  MMETSP0890-20130614|29866_1 463 LEYALNFLNPVFVLRNSVIHDAIESFFATEDPADIQLLIEASSRP 507
                  45556778****************666667777787787777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.83
# Mc/sec: 1559.08
//
Query:       MMETSP0890-20130614|29879_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-48  164.5   2.6    2.1e-48  164.5   1.8    2.1  2  PF00916.15 Sulfate transporter family
    1.2e-22   79.1   3.4    1.2e-22   79.1   2.4    3.3  5  PF13792.1  Sulfate transporter N-terminal domain with GLY motif
    4.1e-13   48.6   0.0    6.5e-13   48.0   0.0    1.3  1  PF01740.16 STAS domain
     0.0004   20.2   0.0     0.0013   18.5   0.0    2.0  1  PF13466.1  STAS domain


Domain annotation for each model (and alignments):
>> PF00916.15  Sulfate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3       1.4   4.9e+03      12      30 ..      97     115 ..      97     117 .. 0.82
   2 !  164.5   1.8   6.2e-52   2.1e-48      11     273 ..     126     407 ..     122     414 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.4
   PF00916.15  12 flsravisGfmaGaailil 30 
                  f+s a+ + +++G+a +il
  MMETSP0890-20130614|29879_1  97 FVSAALTLSCLTGIAQVIL 115
                  7888899999999998887 PP

  == domain 2    score: 164.5 bits;  conditional E-value: 6.2e-52
   PF00916.15  11 eflsravisGfmaGaailillsQlkkllglknltrksglvsvlealfdlvdtl...............anwetlviglsvliflliikllpkrlkklfvvsapaplvavivatlisllfladergvsivgeipsglpelslpklkl........spsllsdllpialalalvgllesiltaksf.akikgyki.dsnkElvAlGiaNivsslfggypatgsfsrsavnvkaGakTqlsgivsavlvllvllvltplleyiPkavLaaiiivaviglidlselkklwkl 273
                   +l +a+i Gf+++aa li+ sQl +++gl+    k+    +le++++ +++                ++w+t++i++++ + l   k l+   +++   ++p +lv++++at+++++f   +  v ivg++p+g p++ l+ ++         + s+l  l++ a++la+v+++ s+++++s+ akik  +  ++ +El A+G+aN+++++f++ypa+gs+srsa+ v aGa+T   ++++a +vll+ll+ltpl++++PkavL+a+++v + +l+d +  k+lw  
  MMETSP0890-20130614|29879_1 126 ALLADAIIEGFTTAAACLIASSQLRHFVGLDDDAWKKAQAKALERFPTVCRSSdllktwlsvinaasnWSWCTIAIASICTALLIAFKRLK---RRFNQRKFPEQLVVIVLATIVTFAF---NIPVPIVGKLPTGPPPIYLQPWRRilsegkgnEESVLLRLVQSAVTLAVVAYALSLAISRSLsAKIKSKDTsSPRRELAAMGVANVIGGFFSAYPAAGSLSRSALAVDAGAETVRHNLIAASIVLLTLLALTPLFKSTPKAVLSAVVFVSLLSLFDPEPPKRLWEQ 407
                  67999*************************9844444444455555555554477788899999997777777777777777776666666...5677789******************...4567999999999888877753321111111156899***********************99455565555699*************************************************************************************9999975 PP

>> PF13792.1  Sulfate transporter N-terminal domain with GLY motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   2.4   3.6e-26   1.2e-22      15      83 ..      10      78 ..       5      79 .. 0.96
   2 ?   -3.1   0.4       1.7   5.8e+03      64      78 ..     109     123 ..      95     143 .. 0.55
   3 ?   -1.8   0.1      0.64   2.2e+03      22      39 ..     284     301 ..     276     308 .. 0.70
   4 ?   -2.7   0.1       1.2   4.2e+03      36      80 ..     371     388 ..     352     393 .. 0.45
   5 ?   -3.7   0.2       2.5   8.6e+03      44      55 ..     427     438 ..     418     444 .. 0.52

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 3.6e-26
    PF13792.1 15 klkgDllAGltvalvliPqalayAllaglppiyGLyaaivplliyalfGssrqlvvGptaalsllvaav 83
                 ++++D+ AGltv++vl+Pq+lay++lagl+p yGLy  + pl++y l+G sr l++Gp+a++sll++++
  MMETSP0890-20130614|29879_1 10 TWRSDFAAGLTVGVVLVPQGLAYGMLAGLDPAYGLYCGVAPLFVYGLLGESRFLAIGPFALVSLLTFEA 78
                 689**************************************************************9875 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.7
    PF13792.1  64 ssrqlvvGptaalsl 78 
                  +  q+++ +t+a  +
  MMETSP0890-20130614|29879_1 109 GIAQVILAATGAAEI 123
                  334444433333322 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.64
    PF13792.1  22 AGltvalvliPqalayAl 39 
                  +++t+a+v+  ++la++ 
  MMETSP0890-20130614|29879_1 284 SAVTLAVVAYALSLAISR 301
                  567777777777777663 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 1.2
    PF13792.1  36 ayAllaglppiyGLyaaivplliyalfGssrqlvvGptaalsllv 80 
                  a                             +   + p+a+ls++v
  MMETSP0890-20130614|29879_1 371 A---------------------------LTPLFKSTPKAVLSAVV 388
                  2...........................22333334444444444 PP

  == domain 5    score: -3.7 bits;  conditional E-value: 2.5
    PF13792.1  44 ppiyGLyaaivp 55 
                   +++GL +ai  
  MMETSP0890-20130614|29879_1 427 GVETGLASAIAI 438
                  344555555443 PP

>> PF01740.16  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.9e-16   6.5e-13       4     117 .]     479     595 ..     476     595 .. 0.89

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 1.9e-16
                  EEEETTEEEEEEE--BSHHHHHHHHHHHHHHHHHS-............--EEEEE----S-B-----------HHHHHT----EEEES--HHHHHHHHH---T.TTS...EEESSHHHH CS
   PF01740.16   4 aeeiegililrldgpldfanaesfkekleravgeeperve....kkislrslildlsavsfiDssGvraLkeilkelkrrgvevvlvnlkpevreklektgff.deveketlfltvhdA 117
                  a + +g++++r    + f n ++f + + ++++ ++ +      +++ ++ ++ld+sa+ ++Dss+     +++  lk++g++++++++++ +r+ l+ +  +   +   t+f ++hdA
  MMETSP0890-20130614|29879_1 479 AHKVPGVIVFRYGTAIHFLNRSHFVKAVLSTTESDTFKYIqeyeQESTVHCVVLDCSAIAYLDSSAETLVADLVLTLKSKGITLLFSCARGPLRDILNSSPKLkPLI--PTIFVSLHDA 595
                  67889*****************************98554489999****************************************************9985551444..6888888876 PP

>> PF13466.1  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.9e-07    0.0013      24      74 ..     526     575 ..     516     578 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.9e-07
    PF13466.1  24 aagadvvvDlsgvervDsaglalLlrlarrarargrrlrlrglppalarll 74 
                    +  vv+D+s ++++Ds++  l++ l ++++++g +l ++++++ l+++l
  MMETSP0890-20130614|29879_1 526 TVH-CVVLDCSAIAYLDSSAETLVADLVLTLKSKGITLLFSCARGPLRDIL 575
                  556.9*******************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.04u 0.41s 00:00:01.45 Elapsed: 00:00:01.09
# Mc/sec: 1505.97
//
Query:       MMETSP0890-20130614|29876_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   47.3   4.0    1.9e-12   47.3   2.8    1.6  2  PF01694.17 Rhomboid family
     0.0014   18.7   1.6     0.0033   17.5   1.1    1.7  1  PF08551.5  Eukaryotic integral membrane protein (DUF1751)
  ------ inclusion threshold ------
      0.019   14.2   5.7       0.39    9.9   1.9    2.7  3  PF07298.6  NnrU protein


Domain annotation for each model (and alignments):
>> PF01694.17  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.94   4.3e+03     119     128 ..      53      62 ..      28      77 .. 0.57
   2 !   47.3   2.8   4.1e-16   1.9e-12       9     142 ..      96     227 ..      91     231 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.94
                  ----S---HH CS
   PF01694.17 119 lpgidnfaHl 128
                  ++gi  +aH+
  MMETSP0890-20130614|29876_1  53 IVGILVAAHI 62 
                  3333333333 PP

  == domain 2    score: 47.3 bits;  conditional E-value: 4.1e-16
                  HHHHGGG--S.HHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHH---HHHHH----......-------HHHH---CCCHHHCCTTS.....--------HCCCCCHHH.....----S---HH-------HHHHHHH CS
   PF01694.17   9 rlltsmflHagvlHllfNmlallvfGiplerelGsvrflllYllsglagsllsslfspags....plvGaSgaifgllgallvllllnrkqlraipaallllliiiainlllgf....lpgidnfaHlgGfivGlllgflll 142
                  r++ s ++Ha+ +Hl  N+ +ll+ G+ le+++Gs +f+++++ s++++++l+ ++ +  +    ++vG S ++f++     + l   +  + +  +  + +++  a++l + +     p  + ++H  G+++Gl++    l
  MMETSP0890-20130614|29876_1  96 RVVLSQIVHADDIHLYYNVTSLLIKGVLLEQRIGSEEFAIFTIFSVVVSAMLYTVVGSILQfgsgCAVGFSSVLFAM----KIILDYDKAGMTS--VWGVRVAARHAAWLEMLVasyvNPRSSLLGHASGIAAGLIW----L 227
                  7999*********************************************8888888777774444666666665555....4555555555553..22222222334444444401135666666666666666654....4 PP

>> PF08551.5  Eukaryotic integral membrane protein (DUF1751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.1   7.3e-07    0.0033      11      69 ..      97     155 ..      92     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.3e-07
    PF08551.5  11 lltsafveqnvievlvslvtlllggkylErlWgskEllkFilvvnvitnllvvllalll 69 
                  +++s+ v +  i++  ++++ll+ g +lE+  gs+E+++F+++ +v++ +l +++  +l
  MMETSP0890-20130614|29876_1  97 VVLSQIVHADDIHLYYNVTSLLIKGVLLEQRIGSEEFAIFTIFSVVVSAMLYTVVGSIL 155
                  6788899999999*********************************9999988876665 PP

>> PF07298.6  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0059        27      62     110 ..      10      71 ..       1      77 [. 0.80
   2 ?   -1.0   0.0      0.19   8.5e+02      25      50 ..     124     148 ..     120     159 .. 0.63
   3 ?    9.9   1.9   8.6e-05      0.39      38      86 ..     163     210 ..     133     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0059
    PF07298.6  62 lwepppwlrhlalllmlvafillaaallkgnpls.............ivritrHPmllgval 110
                   + p    r + ++ m +a+++l+a+++++ + +             +v++  +P+++gv +
  MMETSP0890-20130614|29876_1  10 HYAPRRQRRSADNVNMSPAVLMLLASIYQRYEELpvkppvtfaivgiLVAAHIYPQVIGVPI 71 
                  57777888889999999999999999998887668889999998888888888999998865 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.19
    PF07298.6  25 liarlGergykglysllslaglvlli 50 
                  l++r+G + + ++++++s+++ ++l+
  MMETSP0890-20130614|29876_1 124 LEQRIGSEEF-AIFTIFSVVVSAMLY 148
                  5678888884.455555555544443 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 8.6e-05
    PF07298.6  38 ysllslaglvlliigygaaryevelwepppwlrhlalllmlvafillaa 86 
                  + + s++ ++ +i+ y +a ++  +w +  + rh+a+l mlva ++   
  MMETSP0890-20130614|29876_1 163 VGFSSVLFAMKIILDYDKAGMT-SVWGVRVAARHAAWLEMLVASYVNPR 210
                  56778888999***********.********************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 1166.23
//
Query:       MMETSP0890-20130614|29891_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.072   12.0   0.0      0.077   11.9   0.0    1.1  1  PF01593.19 Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.6e-06     0.077     192     266 ..      55     129 ..       5     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.6e-06
                  CCCCG-HCEEHCEEEH-HHHHHHHHHCCCCEGTTEETTEEEEEEEEETSCEEEEEECSS...EEEESEEEE-S-HHHC CS
   PF01593.19 192 qeddgvefpgggltvpngylsvlvalaegldggvvrlnkrVksitkegdgvtvttedgr...tykaDaVvvTlplgvl 266
                  q+++ + + ++ l + + ++s +  la ++++++++l+++V+ ++k    + v++++ +   ++ka+ V+++++lg+ 
  MMETSP0890-20130614|29891_1  55 QRHWHAGEAYLVLQNETLQDSLIAILAKSIPENKILLRAKVTDLSKP---GIVQYTTASsvsSIKAKIVILAVSLGAR 129
                  444555555555556667778888888999999*************9...566666666699*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 552.71
//
Query:       MMETSP0890-20130614|29895_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 374.91
//
Query:       MMETSP0890-20130614|29894_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 569.63
//
Query:       MMETSP0890-20130614|29903_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   35.0   0.1    2.2e-08   34.1   0.1    1.5  1  PF01880.13 Desulfoferrodoxin


Domain annotation for each model (and alignments):
>> PF01880.13  Desulfoferrodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   1.6e-12   2.2e-08       7      94 ..      73     154 ..      67     156 .. 0.69

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.6e-12
                  HCCS-EEE..SEE-TT.EEEEEEE---S----CTT..C-EEEEEEEE.TTEEE..EEE------SEEEEEEE-S..SSEEEEEEES----EE CS
   PF01880.13   7 ekHvPvieadekvkagesfevkvkvgeveHpmeee..HyIewielvlkdeklk..rvelkpgdepevtfkvklkkekkltaleyCnlHGlWe 94 
                   kH+P +e++    ++        v +v+H+m+ +  H+Ie++ l  +++++    ++++++d+    ++ +  +  +++ ++yCnlHGlW 
  MMETSP0890-20130614|29903_1  73 AKHIPKVEIS---GTK-------IVCSVPHVMDPNkpHFIEYMWLKDETSDAIiaAKSFQASDSSPPSLTANVPQGVSIVPHIYCNLHGLWI 154
                  5788888833...122.......36778898875444****99998754443344999999997444455555557899************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 628.55
//
Query:       MMETSP0890-20130614|29920_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.53
# Mc/sec: 940.46
//
Query:       MMETSP0890-20130614|29929_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-05   22.0   6.9    6.2e-05   21.6   4.8    1.2  1  PF03595.12 C4-dicarboxylate transporter/malic acid transport protein


Domain annotation for each model (and alignments):
>> PF03595.12  C4-dicarboxylate transporter/malic acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   4.8   4.5e-09   6.2e-05     270     320 ..       4      70 ..       1      80 [. 0.62

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 4.5e-09
   PF03595.12 270 lrrr....lpFslswwaftFPlgalalatlelakalg...seafrvlgt.........illvalvli 320
                  +rrr     + +lsw+aftFP+ a+a+a+le+a++ +   s++++ +           +l+v++++i
  MMETSP0890-20130614|29929_1   4 WRRRnvifARLNLSWSAFTFPFCATAIASLEVAAQANsstSAFVKGFVHyyatsiavlALSVVAFVI 70 
                  555566666779********************55555455555555555222222222444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       707  (0.0517115); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.82
# Mc/sec: 397.44
//
Query:       MMETSP0890-20130614|29937_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   13.7   0.0      0.042   13.0   0.0    1.2  1  PF01501.15 Glycosyl transferase family 8
      0.098   12.3   0.0       0.23   11.1   0.0    1.6  1  PF11671.3  Complementary sex determiner protein


Domain annotation for each model (and alignments):
>> PF01501.15  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.1e-06     0.042     156     247 ..     106     211 ..      95     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.1e-06
   PF01501.15 156 cyfnaGvlvfnlkkwrkenltekliewlnkkerllklgdqdllnlvfk...gkvkpLdprynvlglgy............ksskksrkealeeaaviHYigksKPWl 247
                  +  n+G +++n  +  + ++ + l++++n + +   +gdq  l+ +      +++ L+pr+nv  ++             k s+++ +     ++ +H+i + KPW 
  MMETSP0890-20130614|29937_1 106 NGTNSGLVIYNNHALANIHFDDWLLTLFNISPK-GFYGDQTALTVAYGradIHIHWLPPRFNVALTFPrqyignicgadaKYSRHAVDGPSPGISSVHFIWGPKPWS 211
                  6789***********************999999.99*********99999889***********9999999******99888888888888999************6 PP

>> PF11671.3  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.4e-05      0.23     107     134 ..      44      71 ..      36      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.4e-05
    PF11671.3 107 reqvprfryigpltsfpprfispnayrl 134
                   e++p+ ++ig ++++pp+ + p  yr+
  MMETSP0890-20130614|29937_1  44 IEEIPHVQHIGCISAIPPQCLEPSEYRT 71 
                  589***********************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.82
# Mc/sec: 888.41
//
Query:       MMETSP0890-20130614|29941_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0033   17.5   0.1     0.0051   16.8   0.0    1.4  2  PF13232.1  Complex1_LYR-like
     0.0071   16.0   0.4      0.012   15.3   0.1    1.6  1  PF05347.10 Complex 1 protein (LYR family)
     0.0083   15.6   0.0       0.01   15.3   0.0    1.1  1  PF04895.7  Archaeal protein of unknown function (DUF651)
  ------ inclusion threshold ------
       0.14   12.0   0.3       0.17   11.7   0.2    1.5  1  PF01524.12 Geminivirus V1 protein


Domain annotation for each model (and alignments):
>> PF13232.1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0051      13      54 ..       7      45 ..       2      53 .. 0.75
   2 ?   -2.8   0.0         2   6.8e+03       7      10 ..      60      63 ..      54      70 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.5e-06
    PF13232.1 13 earrfpsyssreyfrrriRdeFrknknvtdpekiakllkegq 54
                  + ++p   ++  +rr+++d+F kn+nv+ + +++ ++  g+
  MMETSP0890-20130614|29941_1  7 VGHDYPLGYAQ--VRRKVKDAFLKNRNVQGE-ELKRAIHYGR 45
                 55666666666..9***************99.7777776666 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2
    PF13232.1  7 YRal 10
                 YR l
  MMETSP0890-20130614|29941_1 60 YRTL 63
                 4444 PP

>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.4e-06     0.012      24      48 ..      16      40 ..       2      50 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.4e-06
   PF05347.10 24 eyirrriReeFrknknvtdpekiea 48
                 + +rr+++++F kn+nv+ +e  +a
  MMETSP0890-20130614|29941_1 16 AQVRRKVKDAFLKNRNVQGEELKRA 40
                 567**************98776443 PP

>> PF04895.7  Archaeal protein of unknown function (DUF651)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.9e-06      0.01      42      92 ..       7      56 ..       4      73 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.9e-06
    PF04895.7 42 iteeYyaPvGvWqvRetvreal.kskpakfetleealeavseklkvslkewl 92
                 + ++Y  P+G  qvR +v++a+ k++ ++ e+l+ a+++ +  l+  +  ++
  MMETSP0890-20130614|29941_1  7 VGHDY--PLGYAQVRRKVKDAFlKNRNVQGEELKRAIHYGRYILNEMIGVIQ 56
                 55677..*************9736677999*******999888877666544 PP

>> PF01524.12  Geminivirus V1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     5e-05      0.17      38      63 ..      44      69 ..       9      75 .] 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5e-05
   PF01524.12 38 gyelirdLisvlRarnyveatrRysh 63
                 g  +++++i v++ ++y + +rRys+
  MMETSP0890-20130614|29941_1 44 GRYILNEMIGVIQLKKYRTLKRRYSQ 69
                 677899******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 309.87
//
Query:       MMETSP0890-20130614|29939_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-20   72.3   0.1    1.4e-12   46.8   0.0    2.5  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    1.1e-15   57.2   0.0    4.8e-10   39.1   0.0    2.3  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    2.3e-12   46.4   0.0    5.1e-07   29.3   0.0    2.5  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
       0.02   14.0   0.0      0.048   12.9   0.0    1.6  1  PF11767.3  Histone lysine methyltransferase SET associated
      0.093   12.3   0.2       0.26   10.9   0.0    1.7  2  PF11608.3  Limkain b1


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   5.3e-16   1.4e-12       1      70 []       8      73 ..       8      73 .. 0.97
   2 !   23.2   0.1   1.3e-08   3.4e-05       1      69 [.      97     160 ..      97     161 .. 0.88

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 5.3e-16
                 EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17  1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70
                 +++g+L +++ eee+++  +kfG i  i l ++    + gf+fV F++e+da+++++a + + + g++++
  MMETSP0890-20130614|29939_1  8 VYIGGLDESIPEEEIRRQVEKFGTIDTIWLAKN----PPGFCFVYFTDERDAADCVKAIDDTLFCGSKIR 73
                 7*******************************6....***************************999986 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.3e-08
                  EEEESSTTTSSHHHHHHHHCT..CTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFsk..fGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                  + ++n+ +d++++  k++F++    +++ +++  d       +a+VeF +e+d e+A+++++ ++++g+ +
  MMETSP0890-20130614|29939_1  97 IRIENIAHDLDWRFFKDFFRDglNTQVTYANVEGD-------YAIVEFNTEDDRERAIDKYDRTEIRGNSV 160
                  67999***************985566777777776.......*************************9976 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.8e-13   4.8e-10       1      69 []       8      73 ..       8      73 .. 0.96
   2 !   16.0   0.0   2.9e-06    0.0079      31      68 ..     129     160 ..      97     161 .. 0.68

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.8e-13
    PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69
                 +y++gl +s+ ee++r+ ++++g+++ + + +n    ++gf+fv f +e dA  ++k+ + + + g++ir
  MMETSP0890-20130614|29939_1  8 VYIGGLDESIPEEEIRRQVEKFGTIDTIWLAKN----PPGFCFVYFTDERDAADCVKAIDdTLFCGSKIR 73
                 8********************************....6********************877******997 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.9e-06
    PF14259.1  31 prnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrti 68 
                           ++A+vef +e+d ++a++k++ + ++g  +
  MMETSP0890-20130614|29939_1 129 E-------GDYAIVEFNTEDDRERAIDKYDrTEIRGNSV 160
                  3.......359***********************99877 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.9e-10   5.1e-07       2      56 .]      23      77 ..      22      77 .. 0.94
   2 !   14.7   0.0   6.4e-06     0.018      21      53 ..     130     162 ..     114     164 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.9e-10
    PF13893.1  2 yklfskfGkverikifrkkggqAfvefdtveaArkakeylngvklygktLkveys 56
                 ++  +kfG++  i + ++ +g++fv f ++++A  ++++ + ++++g +++ + +
  MMETSP0890-20130614|29939_1 23 RRQVEKFGTIDTIWLAKNPPGFCFVYFTDERDAADCVKAIDDTLFCGSKIRAQIA 77
                 67789***********999********************************9875 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6.4e-06
    PF13893.1  21 ggqAfvefdtveaArkakeylngvklygktLkv 53 
                  g +A vef t+++ ++a+ +++++ ++g+++ +
  MMETSP0890-20130614|29939_1 130 GDYAIVEFNTEDDRERAIDKYDRTEIRGNSVTI 162
                  689**************************9876 PP

>> PF11767.3  Histone lysine methyltransferase SET associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.048      16      63 ..      21      72 ..      15      75 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-05
    PF11767.3 16 dikkrLkkydwervl...edktGf.YivFndlkeAerCfeaesgkklfeyrm 63
                 +i+++  k++  + +   ++  Gf ++ F d ++A  C++a + +++ ++++
  MMETSP0890-20130614|29939_1 21 EIRRQVEKFGTIDTIwlaKNPPGFcFVYFTDERDAADCVKAIDDTLFCGSKI 72
                 56666666655433323388899889*********************99987 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   4.6e+03      46      75 ..      49      78 ..      45      89 .. 0.60
   2 ?   10.9   0.0   9.6e-05      0.26      36      74 ..     127     165 ..     119     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.7
    PF11608.3 46 fanqeaaeRalkRleneDvfGnritvsesp 75
                 f+++  a    k +++    G +i  +   
  MMETSP0890-20130614|29939_1 49 FTDERDAADCVKAIDDTLFCGSKIRAQIAR 78
                 566666666677777777777777655543 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 9.6e-05
    PF11608.3  36 svsgksavlrfanqeaaeRalkRleneDvfGnritvses 74 
                  +v g  a++ f+ ++  eRa  + +  ++ Gn +t+ + 
  MMETSP0890-20130614|29939_1 127 NVEGDYAIVEFNTEDDRERAIDKYDRTEIRGNSVTITKI 165
                  689999*****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1089.59
//
Query:       MMETSP0890-20130614|29957_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 905.29
//
Query:       MMETSP0890-20130614|29972_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-06   27.8   0.0    2.1e-06   27.6   0.0    1.1  1  PF02195.13 ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> PF02195.13  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.6e-10   2.1e-06      17      77 ..      20      79 ..       6      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.6e-10
                 XX.XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX--------------------- CS
   PF02195.13 17 ld.spekleelvasikeagll.qPiivrkvrqgryeiidGerRlrAakrlgakevpvivlelt 77
                 +  ++ +++++v +  ++gl+  P+ vr+++    e++dG + ++Aak lg+  vpv + + +
  MMETSP0890-20130614|29972_1 20 TSlNQSRIDAIVSTASASGLFqRPLRVRRDD---LEVLDGKHHYAAAKALGLLAVPVSFFDDD 79
                 2346899*************989*******9...***********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.80
# Mc/sec: 353.46
//
Query:       MMETSP0890-20130614|29973_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-14   52.1   5.1    3.1e-14   51.8   3.5    1.1  1  PF02953.10 Tim10/DDP family zinc finger
  ------ inclusion threshold ------
      0.059   13.2   0.5      0.081   12.7   0.3    1.4  1  PF06276.7  Ferric iron reductase FhuF-like transporter


Domain annotation for each model (and alignments):
>> PF02953.10  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   3.5   4.5e-18   3.1e-14       2      66 .]      13      77 ..      12      77 .. 0.96

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 4.5e-18
   PF02953.10  2 kqlaqelelanaqelvnkltekCfkkCvtkypgseLskgeesCldrCvekyldvnnlvskrlqer 66
                 +ql +e + +  +el +k+tekCf kCvt   ++ L+++e+ Cl +C+++y ++  +v+++l +r
  MMETSP0890-20130614|29973_1 13 QQLRNEVNAQAQRELLTKITEKCFAKCVTAKGSGRLERSEQMCLGQCIDRYVECMSTVNQALIQR 77
                 8999**************************999***************************99876 PP

>> PF06276.7  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.2e-05     0.081     113     158 ..       7      51 ..       6      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHH----SS--HH.....HHHHH----EEEE-SHHHHC-T CS
    PF06276.7 113 nvaellewylaelpelaeraafdllaqllfeatlprkgletrlede 158
                   +a +l+++ +e++++a+r+ + ++++ +f+ ++++kg + rle+ 
  MMETSP0890-20130614|29973_1   7 EAAAALQQLRNEVNAQAQRELLTKITEKCFAKCVTAKG-SGRLERS 51 
                  5899*********************************9.5565554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       944  (0.0690462); expected 273.4 (0.02)
Passed bias filter:                      743  (0.0543446); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 297.73
//
Query:       MMETSP0890-20130614|29976_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       121  (0.0088502); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 273.27
//
Query:       MMETSP0890-20130614|29971_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-31  108.5   0.0    3.3e-31  108.2   0.0    1.1  1  PF00069.20 Protein kinase domain
    5.2e-07   28.9   0.0    6.1e-07   28.7   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   4.9e-35   3.3e-31     119     260 .]       3     182 ..       1     182 [. 0.97

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 4.9e-35
                  EE-S--SGGGEEEETT--EEE------EEE...CEESS-CSS----GGGS-HHHHH.TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH...................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 119 iiHrDLKpeNiLldkkgelkiaDFGlakkl...eksseklttlvgtreYmAPEvll.kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks...................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  ++HrD+K++N+L + +g+l +aDFGla+ +     s+  +t  v+t +Y++PE+ll  +++ ++++D+Ws++++++e+l +k++fsg+se +ql+ i + l+++ ++++p++ s                                     +   dl+++ll+ dp++Rl a ++l+h ++
  MMETSP0890-20130614|29971_1   3 FMHRDIKTSNCLYS-RGRLVLADFGLARRFgdpPPSDPPYTRNVVTLWYRPPELLLpYGSYNGPEIDLWSMACVFAEILAKKPLFSGKSELEQLAQIFQLLGPPSQQSWPQYASLApshykfsstcvhsphllrsrfpatalcanrttplsTHGFDLLSSLLTLDPSRRLPASKALQHAYF 182
                  89************.***************99999999****************88689999*************************************************988879*************************************************************997 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   8.9e-11   6.1e-07     124     249 ..       3     135 ..       1     143 [. 0.62

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 8.9e-11
                  EEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS.-HHHHHHSE.EE.HHHHHHH---HHHHHHTTT-GT.TTTS....HHHHHHHHH..HTT-BS---TTSBHHHHHHHHHHT-SSGGGS CS
   PF07714.12 124 lvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWm.apEslkekk.ft.sksDvWsfGvllwEiftlgesp.ypgl....sneevlell..kegkrlekpekcpeelyelmkqCweeepeeR 249
                  ++Hrd+ + N+L +++    ++DfGLar+  +        ++++   W+ +pE+l     ++  + D Ws  ++  Ei+    +p ++g     + +++++ll   +++  ++ ++  ++ y++ ++C+++    R
  MMETSP0890-20130614|29971_1   3 FMHRDIKTSNCLYSRG-RLVLADFGLARRFGDPPPSDPPYTRNVVTLWYrPPELLLPYGsYNgPEIDLWSMACVFAEILAK--KPlFSGKseleQLAQIFQLLgpPSQQSWPQYASLAPSHYKFSSTCVHSPHLLR 135
                  78************55.5669*********555555444445555555549**9865443542689************984..44233331002223333333323344455555555666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.53
# Mc/sec: 917.85
//
Query:       MMETSP0890-20130614|29974_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:01.13
# Mc/sec: 536.03
//
Query:       MMETSP0890-20130614|29983_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   35.5   0.0      2e-08   34.6   0.0    1.4  1  PF12847.2  Methyltransferase domain
    1.4e-08   33.9   0.0    1.9e-08   33.5   0.0    1.2  1  PF02390.12 Putative methyltransferase
    2.9e-08   33.3   0.1    4.2e-08   32.7   0.1    1.3  1  PF13847.1  Methyltransferase domain
    3.6e-05   23.9   0.0    5.9e-05   23.2   0.0    1.3  1  PF13649.1  Methyltransferase domain
    0.00012   22.4   0.0    0.00029   21.1   0.0    1.6  2  PF08242.7  Methyltransferase domain
    0.00012   21.1   0.0    0.00022   20.2   0.0    1.4  2  PF00398.15 Ribosomal RNA adenine dimethylase
    0.00017   21.4   0.0    0.00024   20.9   0.0    1.3  1  PF13659.1  Methyltransferase domain
    0.00024   20.5   0.0    0.00035   20.0   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    0.00031   21.0   0.0     0.0013   19.0   0.0    1.9  2  PF08241.7  Methyltransferase domain
    0.00074   18.7   0.0     0.0013   17.9   0.0    1.4  1  PF08123.8  Histone methylation protein DOT1
     0.0014   17.9   0.0     0.0022   17.3   0.0    1.3  1  PF05175.9  Methyltransferase small domain
     0.0045   16.5   0.0     0.0064   16.0   0.0    1.3  1  PF13489.1  Methyltransferase domain
      0.008   15.1   0.0      0.011   14.7   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.016   14.2   0.0      0.024   13.6   0.0    1.3  1  PF01209.13 ubiE/COQ5 methyltransferase family
      0.019   14.5   0.0      0.033   13.7   0.0    1.4  1  PF13679.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.2e-11     2e-08       5      82 ..      94     170 ..      90     197 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.2e-11
    PF12847.2   5 i.lDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaksldleeriellqgda.keelsllerfDavllkgltld 82 
                  i  D+GcG G++ + +a+++p+ + ++g++++++ + +a+++a  l++ +++++lq+da   + ++ +++ + l+ +  l+
  MMETSP0890-20130614|29983_1  94 IlYDIGCGDGRFVISAAKDAPKKTkIIGIEADAKLATRAEQAA--LSI-PNVQILQADAtCIDFTDATKIFLYLVPC-GLS 170
                  448***************5555555******************..444.**********988888888877777766.333 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0     2e-11   1.9e-08      19      80 ..      91     151 ..      57     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2e-11
                  GB-EEEE--------HHHHHHH-TTS.EEE---S-HHHHHHHHHHHHHH--TTB------HHH CS
   PF02390.12  19 eqklvleIGfGsGdflvalAkknPdk.lflGiEirqkvvekvlkkiealglkNlrilegdaek 80 
                  e+ ++ +IG+G G+f++  Ak+ P+k +++GiE   k   ++    +al + N++il+ da+ 
  MMETSP0890-20130614|29983_1  91 ENDILYDIGCGDGRFVISAAKDAPKKtKIIGIEADAKLATRAE--QAALSIPNVQILQADATC 151
                  45599*******************872699*****99986554..4678999********975 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   4.6e-11   4.2e-08       2      67 ..      90     153 ..      89     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 4.6e-11
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieele 67 
                  +++  ++D+GCG G++ + +a+ + ++ k++Gi+ +++   +A++  + l + nv++ q+d++ ++
  MMETSP0890-20130614|29983_1  90 QENDILYDIGCGDGRFVISAAKDAPKKTKIIGIEADAKLATRAEQ--AALSIPNVQILQADATCID 153
                  689999***************88888899****************..7899**********98776 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.5e-08   5.9e-05       2      76 ..      96     167 ..      95     187 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.5e-08
    PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcagl 76 
                   d+GCG Gr +  +++ ++k+   ++ig++ +++    a++ + s   +v+ +qada+ ++f +++  + +++ +
  MMETSP0890-20130614|29983_1  96 YDIGCGDGRFVISAAKDAPKK--TKIIGIEADAKLATRAEQAALSIP-NVQILQADATCIDFTDATKIFLYLVPC 167
                  69*******888888777555..9***********999999996543.*************99987666665444 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.6   7.9e+03      53      72 ..      16      35 ..       8      43 .. 0.63
   2 !   21.1   0.0   3.2e-07   0.00029       2      95 ..      97     205 ..      96     206 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 8.6
    PF08242.7 53 lealdlldldggssfDvvva 72
                 + +++ +++++++  D++v 
  MMETSP0890-20130614|29983_1 16 FTTEESISEEERNELDAIVD 35
                 44555555556677777775 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 3.2e-07
    PF08242.7   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.............ssfDvvvas.nvlhhlkdirevldnirklLkp 95 
                  +iGcG+G+++   +++  +  +++g++ +++  ++a++   +++n ++ + +   +d  d  +              s+ D v  s +v++++ +i e++  ir++ +p
  MMETSP0890-20130614|29983_1  97 DIGCGDGRFVISAAKDApKKTKIIGIEADAKLATRAEQAALSIPNVQILQADATCIDFTDATKIflylvpcglsaikSTLDKVRHSaDVVSYTFTIPEWIPDIRRVPAP 205
                  9***************988999**********************99999999999997666555*************88888876668888888888888888887666 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.4   3.1e+03     195     209 ..       6      20 ..       4      47 .. 0.61
   2 !   20.2   0.0   2.4e-07   0.00022      21      92 ..      82     156 ..      76     177 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.4
   PF00398.15 195 pqkdlkkfeslvrkl 209
                  p+++++++es++++ 
  MMETSP0890-20130614|29983_1   6 PNEARRHWESFTTEE 20 
                  567788888887653 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 2.4e-07
   PF00398.15  21 eIldklnlqekdtvlEigpGkGalTeeLakra...kqvvalEidsklvkrlqkklakdenvevvhqDflkfstpe 92 
                   +l+ lnlqe+d +++ig G+G +  + ak a    ++  +E d kl+ r +++  + +nv+++++D+  +++  
  MMETSP0890-20130614|29983_1  82 IALSFLNLQENDILYDIGCGDGRFVISAAKDApkkTKIIGIEADAKLATRAEQAALSIPNVQILQADATCIDFTD 156
                  567899**********************999998788999*************999***********98887765 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.6e-07   0.00024       5      63 ..      96     153 ..      92     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.6e-07
    PF13659.1   5 ldpgcGsGtfllaalell..aalllgvEldpraaalaarnlaraglaervrvrqgdlrdla 63 
                   d+gcG G f + a++ +  + +++g+E d++ a  a++++ +    ++v++ q+d++ ++
  MMETSP0890-20130614|29983_1  96 YDIGCGDGRFVISAAKDApkKTKIIGIEADAKLATRAEQAALSI---PNVQILQADATCID 153
                  69***************999*************99999888765...58999999997665 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.8e-07   0.00035      61     132 ..      79     148 ..      67     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.8e-07
                  HHHHHHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE--- CS
   PF01135.14  61 mvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgD 132
                   +a+al +l+l++ +   ++G+G G      a+   +k+++++ie  ++l+++a++   +l + nv++  +D
  MMETSP0890-20130614|29983_1  79 AIAIALSFLNLQENDILYDIGCGDGRFVISAAKDAPKKTKIIGIEADAKLATRAEQA--ALSIPNVQILQAD 148
                  57999***********************************************99985..5666677777776 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-06    0.0013       2      59 ..      97     157 ..      96     164 .. 0.85
   2 ?   -1.7   0.0       4.2   3.8e+03      59      78 ..     181     201 ..     173     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.4e-06
    PF08241.7   2 dvGcGtglllealaer..paarvtgvDlseemlatakerl.keeglelvvadaeelpfedn 59 
                  d+GcG g+++   a+   ++ +++g++ +++  ++a++++ +  ++++ +ada+ ++f d+
  MMETSP0890-20130614|29983_1  97 DIGCGDGRFVISAAKDapKKTKIIGIEADAKLATRAEQAAlSIPNVQILQADATCIDFTDA 157
                  9*************999**************7777766541445555***********997 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 4.2
    PF08241.7  59 nsfDvvvssevl.ehledpek 78 
                   s Dvv  ++++ e+++d ++
  MMETSP0890-20130614|29983_1 181 HSADVVSYTFTIpEWIPDIRR 201
                  689999888888677788776 PP

>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-06    0.0013      32      85 ..      81     135 ..      71     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.4e-06
                  HHHHHHTT-----EEEEE------HHHHHHHH----E.EE--B--HHHHHHHHHH CS
    PF08123.8  32 sevldkvnlkkedvFvDLGSGvGnvvlqaalevgckl.svGvEimdnaselaekq 85 
                  +  l+ +nl+++d+ +D+G G G+ v+ aa ++  k+  +G+E   + ++ ae+ 
  MMETSP0890-20130614|29983_1  81 AIALSFLNLQENDILYDIGCGDGRFVISAAKDAPKKTkIIGIEADAKLATRAEQA 135
                  5567789************************998775168***999999888875 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.4e-06    0.0022      17      90 ..      77     149 ..      73     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.4e-06
                  ----HHHHHHS-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-ST CS
    PF05175.9  17 DaGselLletlpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdl 90 
                  D + ++ l+ l+ ++++ + D+GcG G   +++ak  p+ + +++ i+a A  +++a+ +a  + nv++l+ d+
  MMETSP0890-20130614|29983_1  77 DSAIAIALSFLNLQENDILYDIGCGDGRFVISAAKDAPK-KTKIIGIEADAKLATRAEQAALSIPNVQILQADA 149
                  66666778888887888889*******************.8999999999999999999999999999999987 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     7e-06    0.0064      16      60 ..      87     139 ..      66     202 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 7e-06
    PF13489.1  16 llarlkpggrvLDiGcGtGillell...aengfdvtgvDpspaaigk.......a 60 
                  l   l+++  + DiGcG+G+++      a++  +++g++ +  +  +       +
  MMETSP0890-20130614|29983_1  87 LN--LQENDILYDIGCGDGRFVISAakdAPKKTKIIGIEADAKLATRaeqaalsI 139
                  33..78888899***********99533334569******877665555554441 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-05     0.011      52      92 ..      81     123 ..      77     161 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-05
                  HHHHHTT------EEEE-------HHHHHHHHH..--EEE--B CS
   PF02353.15  52 dlileklelkpGmtlLdiGcGWGslvrravery..dvkvvglT 92 
                   ++l  l+l++ + l diGcG G  v+ a++      k++g+ 
  MMETSP0890-20130614|29983_1  81 AIALSFLNLQENDILYDIGCGDGRFVISAAKDApkKTKIIGIE 123
                  678899**********************998641145666665 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-05     0.024      49     130 ..      93     173 ..      82     188 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.6e-05
   PF01209.13  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfD.vvtvsfGlrnvt 130
                    + D+ +G g + ++ ++ + +k k+++++ ++++   +e+ +   +  n++ lqa+a  ++f+d ++  ++ v  Gl  + 
  MMETSP0890-20130614|29983_1  93 DILYDIGCGDGRFVISAAKDAPKKTKIIGIEADAKLATRAEQAAL--SIPNVQILQADATCIDFTDATKIfLYLVPCGLSAIK 173
                  4566***************************99999877777654..4559999************87641566777776655 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.6e-05     0.033      25      77 ..      91     140 ..      78     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.6e-05
    PF13679.1  25 gsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklg 77 
                  ++  + D+G+G g    ++a+   ++ +k+k++gi+++++l+++ae+ a  + 
  MMETSP0890-20130614|29983_1  91 ENDILYDIGCGDGRFVISAAK---DAPKKTKIIGIEADAKLATRAEQAALSIP 140
                  556789*******76655555...5558*****************99987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.39s 00:00:00.89 Elapsed: 00:00:02.04
# Mc/sec: 243.16
//
Query:       MMETSP0890-20130614|29987_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 280.82
//
Query:       MMETSP0890-20130614|30011_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.4   0.0      0.018   14.0   0.0    1.3  1  PF00834.14 Ribulose-phosphate 3 epimerase family


Domain annotation for each model (and alignments):
>> PF00834.14  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-06     0.018      39     113 ..      13      83 ..       2      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-06
                  SS------HHHHHHGGGE-S-EEEEEESSSHHHCHHHHH.H----EEEEB-ST-TTHHHHHHHHHH---B---EE- CS
   PF00834.14  39 vpNltigplvvealrkltelpldvHLmveevdrlipefa.eagadiisfHaEasehlkrtiqeikeaGakagvvln 113
                  vpN+ ++ + +++       + +  L +++++++i++ + e g   is+HaE+++ l+ ++   ++aG+ a   ++
  MMETSP0890-20130614|30011_1  13 VPNTKLQRVRLDSPP-----QCSSTLAIHQPNAIIDRCLiEGGDYGISIHAEQCQVLSTVVLGARNAGIFASFRFR 83 
                  555555555555444.....4456788899*****98651555558**********************98876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.33s 00:00:00.71 Elapsed: 00:00:00.67
# Mc/sec: 486.42
//
Query:       MMETSP0890-20130614|30006_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-23   81.7   0.0    1.1e-22   80.6   0.0    1.6  2  PF10354.4  Domain of unknown function (DUF2431)
  ------ inclusion threshold ------
      0.043   12.7   0.0      0.065   12.1   0.0    1.3  1  PF02390.12 Putative methyltransferase
      0.081   12.8   0.1       0.34   10.8   0.0    1.8  2  PF13659.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10354.4  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   2.4e-26   1.1e-22       1     142 [.      36     186 ..      36     212 .. 0.81
   2 ?   -0.8   0.0      0.26   1.2e+03      44      69 ..     196     222 ..     168     278 .. 0.67

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 2.4e-26
    PF10354.4   1 LlvGeGdlSFslsLaeklgsaenlvaTsldseeeleekypsveenlkeLeesgvkvlhgvdatklkkslelkkkkfdriiFnFPhtgkkekdskrnirknqeLlvkffksa...kellkekgeiivtlkegep..................y.dsWniealaae 142
                  L++G+GdlS s+ +a+      nl+ T++dse+e+ +ky++  + +++   ++   +h+vda+kl++     ++ fdriiFnFPh+      +k+nir+n++Ll++ff s    ++ll+++ge++++l +g++                  y  s+++ a aa 
  MMETSP0890-20130614|30006_1  36 LVLGDGDLSCSQEIAKYIP---NLISTTFDSEKEILSKYTE--KAIQK--AKELGTIHNVDARKLDTYP-FCNQCFDRIIFNFPHVP-----GKMNIRDNRQLLQDFFVSVtanNRLLASHGEVLIALLSGQGgteielqdyddpsialnaYrASFQLDACAAL 186
                  899************9998...******************5..55554..4555689*********999.78899***********9.....899*************875222679999***********998888888877777777665566666655554 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.26
    PF10354.4  44 enlkeL.eesgvkvlhgvdatklkksl 69 
                  en+k   + +g +  +gv++++l+++ 
  MMETSP0890-20130614|30006_1 196 ENFKSFyQARGHRHSTGVNVRNLNTTN 222
                  555555566777777777777777665 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.065      50     131 ..      66     146 ..      33     149 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
                  -S-HHHHHHHHHHHHHH--TTB------HHHHHHHHS----BSEEEEES-.---------------TTHHHHHHH..HB-----E CS
   PF02390.12  50 EirqkvvekvlkkiealglkNlrilegdaekvleslfadnslekifinFP.DPWfKkrhhKrRllqpellkelar..vLkkgGvl 131
                  Ei +k  ek+++k+++lg+    i ++da+k+  + f ++ +++i +nFP +P   + +  r llq+ +++  a+   L+  G++
  MMETSP0890-20130614|30006_1  66 EILSKYTEKAIQKAKELGT----IHNVDARKLDTYPFCNQCFDRIIFNFPhVPGKMNIRDNRQLLQDFFVSVTANnrLLASHGEV 146
                  4555556666666666655....8889999999999999999********66888888888889999888776641156666665 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.4e-05      0.34      53     109 ..      84     144 ..      66     152 .. 0.72
   2 ?   -0.8   0.0       0.3   1.4e+03      48      60 ..     223     252 ..     144     262 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.4e-05
    PF13659.1  53 rvrqgdlrdla.ellragsfdlvvtnpPygpragaraalrdlydafleaa...arllkpgG 109
                  ++++ d+r+l+  ++  ++fd +++n P +p + + +++r+l+  f+       rll+++G
  MMETSP0890-20130614|30006_1  84 TIHNVDARKLDtYPFCNQCFDRIIFNFPHVPGKMNIRDNRQLLQDFFVSVtanNRLLASHG 144
                  4666777777622355699**********************99999865512245555555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.3
    PF13659.1  48 l.................aervrvrqgdlr 60 
                  +                 +++++v++ d+ 
  MMETSP0890-20130614|30006_1 223 AkihilaksgiavstpayTAELHVQCQDAD 252
                  033333333333333333555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       534  (0.0390579); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 851.12
//
Query:       MMETSP0890-20130614|30012_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.33s 00:00:00.71 Elapsed: 00:00:00.73
# Mc/sec: 318.42
//
Query:       MMETSP0890-20130614|30010_1  [L=774]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-45  155.8   5.4    7.1e-43  146.7   2.2    2.3  2  PF02181.18 Formin Homology 2 Domain
      2e-06   28.0   2.2    0.00082   19.5   0.1    4.2  4  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   2.2     1e-46   7.1e-43       8     294 ..     153     467 ..     146     483 .. 0.89
   2 !    9.0   0.0   7.3e-05       0.5     313     370 ..     528     587 ..     517     588 .. 0.84

  Alignments for each domain:
  == domain 1    score: 146.7 bits;  conditional E-value: 1e-46
                  SS-B--------S.SGGCSSSHHHHTTCHHHHCTSHHHHHHHHTBSC--HCCH--............---HCCCCTTCCESSS-HHHHHHHHHHCHHH.TS-HHHHHHHHHTTTT..CCCTHHHHHHHHHHCGGHHHHHHHHTTCCC...........GTTB-HHHHHHHCCCTCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---TTT-CCTTG------GGGGGGCCCSB-STTTSBHHHHHHHHHHT..TSGGGGGHH.HHTTTHHHCCTS-HHHHHHHHHHHHHHHHHH CS
   PF02181.18   8 kkklkplhWdkvn.aaqdrgtvWdkleeesfekdldldeleelFsakakkksskk............ekkkkkkkkkkkikvLdpkrsqnvaIllrkl.klpaeeivqailelde..evlslellenLlkmlPtkeeleklkeykgd...........eskLseaeqFllelvkiprleeRleallfksefeeeveelkrkletleaaseeLreseklkklLeliLalGNymNggtrrgqAkGFkLdsLlkLsdvKstdnkttLLhfvvkivee..klpevldls.selsnvekaakvdleelekdvkklekglkkl 294
                   ++   lhW+k++ ++++r++vW+  + e   +++d++ l+elF+a+ +++  ++                  + + k++++Ld+kr qn+ I+l+k+ +  ++++++  l+++e  + l++e+l++L + lPt+ee +k+ +y ++           e++L+ ae+F+l+ +++p+    l+a +   +f      +++  e ++ a  ++ +s+ l   L+ iLa+GN mN+gtrrgqA+G +L sLl + ++K++d+ktt L++v + + +  +++ ++++    ++ v  a k+++ e+e d+ +le+gl+ +
  MMETSP0890-20130614|30010_1 153 RPSVMGLHWEKIEcDTEVRNSVWANNNHE--LDKEDMEHLKELFAAAPSTTEFRSenkkstpslkraASMGTPSPRLKSVELLDKKRFQNMTIALSKFaRQFRHDFEALWLAVEEmsSELDTEALDRLRETLPTSEETNKVITYVQEagekrsdqllaEKRLGLAEKFVLATSRVPEHMLYLNAATELRSFGARADAINQAAECVSLAATQIVSSKGLALTLQRILAVGNVMNAGTRRGQAQGVRLGSLLTIIKTKGRDRKTTVLDYVINGLLKrgHTEALEEVAtTLIEPVANAVKLSVAEIERDMAALERGLQYI 467
                  5666779******66777888***76666..689***********99888776666889****99988888999999*********************87778899998888888777999********************544444455677899999*************************************************************************************************************99776666666677777688999**********************9865 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 7.3e-05
                  HHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHS---TT.CCHHHHHHHHHHHHHHHH CS
   PF02181.18 313 ekleefleeaeeklkkleeelke.akelfkelteYfgedpk.evspeeffkilreFlnef 370
                    le fl++a   ++ l+e+ +  +ke ++ l+e+fged +   +  ++f + ++Fl++f
  MMETSP0890-20130614|30010_1 528 TRLELFLNDAHNTVAWLRENRTAlMKEHAQALCEFFGEDVStYQNAGRIFDTAHSFLQAF 587
                  57899************9988761556678899*****999445678**********998 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.2e-07   0.00082     112     143 ..      21      52 ..       2      57 .. 0.76
   2 !   17.1   0.1   6.6e-07    0.0045      82     144 ..      59     121 ..      51     125 .. 0.78
   3 ?   -3.4   0.0       1.4   9.4e+03      27      57 ..     447     477 ..     444     522 .. 0.69
   4 ?   -6.6   8.4         2   1.4e+04      57     100 ..     691     759 ..     579     767 .. 0.57

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.2e-07
    PF10152.4 112 kdpryakYfkmlklgVpaeavknKmqaeGldp 143
                    +r a + kmlk+gVp +av  Km+a Gl  
  MMETSP0890-20130614|30010_1  21 VSERAAPFCKMLKMGVPPAAVELKMKAQGLSR 52 
                  5678999**********************975 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 6.6e-07
    PF10152.4  82 aaaqeaeaaraetpaeqepealaegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpe 144
                   +a + e++ +++ ++++ e+++  +++ ++dp +a Y +mlklgV    v  +m+++ ++ +
  MMETSP0890-20130614|30010_1  59 LTAVAGENDDTSNDKPPANENQETRPNKPSDDPILAPYARMLKLGVAMDNVLLRMRLDEVNAD 121
                  556666666666666667777777888889*************************99977665 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.4
    PF10152.4  27 ersLqqlElklqlLeakLasidgleeledqd 57 
                  + s+ ++E+ +  Le+ L+ i + e+ + +d
  MMETSP0890-20130614|30010_1 447 KLSVAEIERDMAALERGLQYIIKIEQSKRED 477
                  5567788888888888887766555555444 PP

  == domain 4    score: -6.6 bits;  conditional E-value: 2
    PF10152.4  57 d.....................elpappaaarrsggpppppg....araeaaaqeaeaaraetpaeqep 100
                                        +   ++ +a ++++pp p++    ++++++++ a  +++++pa++e 
  MMETSP0890-20130614|30010_1 691 LkakskqsrvqlqkestsrrskSSASSKHQAISRSSPPIPDAwsalTEVSPSPPIAARSQESPPAPSEQ 759
                  044444444544445555554222333333334444444444665555555555555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.22u 0.33s 00:00:01.55 Elapsed: 00:00:01.50
# Mc/sec: 1236.52
//
Query:       MMETSP0890-20130614|30017_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-07   29.3   0.2    6.1e-07   28.9   0.2    1.2  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.051   13.3   3.4      0.065   12.9   2.4    1.1  1  PF11377.3  Protein of unknown function (DUF3180)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2   8.9e-11   6.1e-07      28      64 .]       4      36 ..       1      36 [. 0.92

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 8.9e-11
                 T-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26 28 yHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                 yHPD+  +d+     k++++n  y++Ls+p++r +yd
  MMETSP0890-20130614|30017_1  4 YHPDRPGGDK----AKMQQLNHIYKILSNPRSRHKYD 36
                 9****77777....**********************8 PP

>> PF11377.3  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.4   9.5e-06     0.065      24      91 ..      63     129 ..      47     138 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.5e-06
    PF11377.3  24 gslpilpvtaavsllvvAvi.elvlAlrvrrrleigkgkrrldPltaarllvlAkAsalvGAllaGvyv 91 
                    +  l++t++ +l+ +A++  +v+A++   +   ++++ +ldP + + +  ++ A+ ++ A+++G ++
  MMETSP0890-20130614|30017_1  63 ACVGLLTWTFPSTLFPIAAVgAIVYAISAGPTS--RRQNYNLDPSKTFAACFVGLAAGWTIAAVLGTVA 129
                  335569*********998872567788888888..999****************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 557.84
//
Query:       MMETSP0890-20130614|30024_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-66  224.1   0.5    1.7e-66  224.1   0.4    1.8  2  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
      0.029   14.6   1.3      0.029   14.6   0.9    3.2  3  PF04102.7  SlyX


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.4   2.5e-70   1.7e-66     102     334 ..       3     222 ..       1     223 [. 0.94
   2 ?   -1.7   0.2      0.12   8.2e+02     142     185 ..     420     461 ..     403     475 .. 0.81

  Alignments for each domain:
  == domain 1    score: 224.1 bits;  conditional E-value: 2.5e-70
                  --HHHHHHHHHHHHHCCTTTHTEEEEEE.EEEEEEETTEEEETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT.TTSS-CGGGSHHHHHTGGCH--.--EEEEEEEE--BGGGHHHHHHHHHHHHHHCT CS
   PF00225.18 102 GiipraleelFeeieeekeekekefsvk.vsylEiYnekiyDLLesekekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaenkkskhvpYRdSkLTrlLqdsLgg.nsktlmivtvspsssnleetlstLrfaerakn 334
                  Gi  r++++lF+ ++++++e++ +f++  +s++EiY  ++ DLL+++      +l++red k g+v++ gl++++v+s ee+l+ ++kg+k r+++ t++n++SSRSHai++i+l+++  +       +  +kl+LvDLAGsEra++t++++++ ++E+a+INkSLlaL+++I+ La+n  ++hvp+R SkLT++L+ds+   +++++mi+tvsp+ s +++t++tLr+a+r+k+
  MMETSP0890-20130614|30024_1   3 GIQERTVRDLFDGLATSSHETDDDFTLItLSFFEIYGGRCLDLLQDR-----ARLQVREDGK-GEVNIIGLSKERVHSPEELLAAIDKGNKIRTTQRTEANDTSSRSHAICQIHLTASL-DG------SDRGKLSLVDLAGSERANDTRSHSRQLRTESAAINKSLLALKECIRGLATN--DHHVPFRASKLTMVLRDSFVRaHCRVAMIATVSPAVSATDHTINTLRYADRVKE 222
                  99*****************9999998654****************75.....459******9.56***************************************************976.32......2469*****************9999999***********************..******************97659*****************************96 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.12
                  ETTSTTTTS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHH CS
   PF00225.18 142 DLLesekekkkkklkiredskkgkvyvkgltevevksaeevlel 185
                   LL +e  k  ++++i ed +    yv+ l ++  ++ae++++l
  MMETSP0890-20130614|30024_1 420 ELLTEEG-KMLQSVQIAEDYNID-DYVARLDSILTTKAEQITSL 461
                  5777764.556679999999965.99999999999999999876 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.8      0.25   1.7e+03      55      67 ..     237     249 ..     225     250 .. 0.64
   2 ?   -3.2   0.1       1.5     1e+04      55      67 ..     280     291 ..     273     291 .. 0.52
   3 ?   14.6   0.9   4.2e-06     0.029      17      54 ..     441     478 ..     435     485 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.25
    PF04102.7  55 sneaseaeeepPP 67 
                  ++ +s+  e+pPP
  MMETSP0890-20130614|30024_1 237 ESRESPTPETPPP 249
                  3346677777777 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.5
    PF04102.7  55 sneaseaeeepPP 67 
                  +   +   +e+PP
  MMETSP0890-20130614|30024_1 280 E-VSRRNSNEKPP 291
                  3.34455567776 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 4.2e-06
    PF04102.7  17 edtieeLNevvaeqqkeidrlqrqlrllaerlkelees 54 
                  +d + +L+ ++++  ++i+ l+++l++ ++rlk+ e++
  MMETSP0890-20130614|30024_1 441 DDYVARLDSILTTKAEQITSLKQRLQRFTQRLKDEENQ 478
                  79999*****************************8854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       904  (0.0661205); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:01.01
# Mc/sec: 1157.84
//
Query:       MMETSP0890-20130614|30028_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.4   0.1    1.4e-16   60.1   0.1    1.1  1  PF00575.18 S1 RNA binding domain


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1     1e-20   1.4e-16       2      74 .]       3      77 ..       2      77 .. 0.98

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1e-20
                 SSTT-EEE--EEEEETTEEEEE--...--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
   PF00575.18  2 pekGevvkGtVtsvtkgGafVdlg..ngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74
                 p++G+ v+G Vt+v  +Gaf  l+  +g eg++++se++ +rv+++++ +k g+ ++ kv++vd ++k+i Ls+k
  MMETSP0890-20130614|30028_1  3 PQVGDLVSGMVTDVKTFGAFCALDgfEGLEGLVHVSELAIERVRNIDRFIKTGQLLDCKVINVDTKTKKIGLSRK 77
                 89***********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 366.11
//
Query:       MMETSP0890-20130614|30029_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                       137  (0.0100205); expected 13.7 (0.001)
Passed Fwd filter:                        52  (0.00380339); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.53u 0.42s 00:00:01.95 Elapsed: 00:00:01.31
# Mc/sec: 711.59
//
Query:       MMETSP0890-20130614|30056_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-25   87.7   0.0    1.2e-13   51.0   0.0    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    7.2e-24   83.6   1.1      6e-11   42.4   0.0    3.5  4  PF13637.1  Ankyrin repeats (many copies)
      3e-16   58.1   0.0    1.8e-07   30.5   0.0    3.5  3  PF00023.25 Ankyrin repeat
    4.1e-14   52.1   1.4    9.9e-07   28.6   0.2    3.2  3  PF13857.1  Ankyrin repeats (many copies)
    1.2e-13   49.6   0.0    8.8e-05   22.2   0.0    3.9  4  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
       0.15   11.4   0.0       0.26   10.6   0.0    1.3  1  PF11361.3  Protein of unknown function (DUF3159)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   5.5e-17   1.2e-13      14      87 ..      48     129 ..      28     131 .. 0.87
   2 !   42.0   0.0   3.5e-14   7.9e-11      22      81 ..      93     156 ..      85     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 5.5e-17
    PF12796.2  14 klLle.kgadvdl...getpLhlAaeagnleivklLle....agadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                   +Ll+ +  +v+    g++pL++Aa  g+l +vklLl        dvn  +++g tp ++A+r g +e++klL+ekgad+nl
  MMETSP0890-20130614|30056_1  48 SILLNnEYPNVNClnyGQSPLFIAANTGKLGVVKLLLRwphnEPIDVNLCNDDGATPFFAACRGGYTEIAKLLIEKGADPNL 129
                  5667635588888888999*******************9985456899999*****************************97 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 3.5e-14
    PF12796.2  22 dvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlek 81 
                  dv+l    g tp ++A++ g +ei+klL+e+gad+n  + +g++pL +A  +g++ l+++L+++
  MMETSP0890-20130614|30056_1  93 DVNLcnddGATPFFAACRGGYTEIAKLLIEKGADPNLATTDGRSPLWIAGYFGRVHLLRWLIDA 156
                  44446666899***************************************************87 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-05     0.041      18      54 .]      48      84 ..      28      84 .. 0.81
   2 !   38.3   0.0     5e-13   1.1e-09       3      54 .]      66     121 ..      65     121 .. 0.96
   3 !   42.4   0.0   2.6e-14     6e-11       3      54 .]     103     154 ..     103     154 .. 0.98
   4 ?   -1.8   0.0       1.9   4.3e+03      33      53 ..     173     193 ..     162     194 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-05
    PF13637.1 18 klLlekg.idinrtdesGntaLhiAalrgnieilklLl 54
                   Ll++  +++n++ ++G ++L iAa +g + ++klLl
  MMETSP0890-20130614|30056_1 48 SILLNNEyPNVNCL-NYGQSPLFIAANTGKLGVVKLLL 84
                 56776644789***.56********************8 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 5e-13
    PF13637.1   3 taLhyaaisgrlelvklLl....ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  ++L+ aa+ g l +vklLl    +  id+n ++++G t++  A+++g+ ei+klL+
  MMETSP0890-20130614|30056_1  66 SPLFIAANTGKLGVVKLLLrwphNEPIDVNLCNDDGATPFFAACRGGYTEIAKLLI 121
                  69*******************87779*****************************8 PP

  == domain 3    score: 42.4 bits;  conditional E-value: 2.6e-14
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  t+++ a++ g +e++klL+ekg+d+n    +G+++L iA ++g++++l++L+
  MMETSP0890-20130614|30056_1 103 TPFFAACRGGYTEIAKLLIEKGADPNLATTDGRSPLWIAGYFGRVHLLRWLI 154
                  789************************************************8 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.9
    PF13637.1  33 sGntaLhiAalrgnieilklL 53 
                  +G+++ ++A  r + ++l lL
  MMETSP0890-20130614|30056_1 173 QGTSPEDVARIRKHTRALALL 193
                  677777777677777777665 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.1e-06    0.0047       1      32 [.      63      98 ..      63      99 .. 0.82
   2 !   30.5   0.0   7.7e-11   1.8e-07       1      32 [.     100     131 ..     100     132 .. 0.96
   3 !    7.3   0.0    0.0018         4       1      23 [.     133     155 ..     133     160 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.1e-06
                 TSCBHHHHHHHTTHHHHHHHHHH....TTSSTTHBH CS
   PF00023.25  1 dGfTPLHlAalrgnlevvklLls....qGAdlnaqd 32
                 +G++PL +Aa  g l vvklLl        d+n+++
  MMETSP0890-20130614|30056_1 63 YGQSPLFIAANTGKLGVVKLLLRwphnEPIDVNLCN 98
                 69********************97766666666655 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 7.7e-11
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  dG TP   A++ g++e++klL+++GAd+n+ +
  MMETSP0890-20130614|30056_1 100 DGATPFFAACRGGYTEIAKLLIEKGADPNLAT 131
                  89***************************976 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0018
                  TSCBHHHHHHHTTHHHHHHHHHH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLls 23 
                  dG++PL +A + g++  +++L++
  MMETSP0890-20130614|30056_1 133 DGRSPLWIAGYFGRVHLLRWLID 155
                  8*********************9 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   4.3e-10   9.9e-07       1      55 [.      50     107 ..      50     108 .. 0.88
   2 !   20.8   0.0   1.3e-07   0.00029      23      53 ..     108     138 ..     106     141 .. 0.94
   3 ?    0.6   0.0       0.3   6.9e+02      26      36 ..     144     154 ..     140     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.3e-10
    PF13857.1   1 Llehg.padvnatdeggntpLhlAakggalevvrlLl....apgadlnlrdsdgltaldl 55 
                  Ll++  p++++ ++++  +pL +Aa+ g l vv+lLl    + + d nl++ dg t++  
  MMETSP0890-20130614|30056_1  50 LLNNEyPNVNCLNYGQ--SPLFIAANTGKLGVVKLLLrwphNEPIDVNLCNDDGATPFFA 107
                  7788877777766555..***************************************865 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 1.3e-07
    PF13857.1  23 AakggalevvrlLlapgadlnlrdsdgltal 53 
                  A++gg++e+++lL+++gad+nl ++dg+++l
  MMETSP0890-20130614|30056_1 108 ACRGGYTEIAKLLIEKGADPNLATTDGRSPL 138
                  999***************************9 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.3
    PF13857.1  26 ggalevvrlLl 36 
                   g+++++r+L+
  MMETSP0890-20130614|30056_1 144 FGRVHLLRWLI 154
                  699*******9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.2     5e+03      18      29 ..      47      59 ..      28      60 .. 0.73
   2 !   13.7   0.0   2.2e-05      0.05       1      29 [.      63      95 ..      63      96 .. 0.83
   3 !   22.2   0.0   3.8e-08   8.8e-05       1      29 [.     100     128 ..     100     129 .. 0.95
   4 !    9.0   0.0   0.00071       1.6       1      27 [.     133     160 ..     133     163 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.2
    PF13606.1 18 veaLlen.gadin 29
                 +++Ll+n  +++n
  MMETSP0890-20130614|30056_1 47 LSILLNNeYPNVN 59
                 7789998447777 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.2e-05
    PF13606.1  1 nGnTpLhlAasngrielveaLlen....gadin 29
                 +G++pL++Aa  g++ +v++Ll+     ++d+n
  MMETSP0890-20130614|30056_1 63 YGQSPLFIAANTGKLGVVKLLLRWphnePIDVN 95
                 8*********************95334456776 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 3.8e-08
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                  +G Tp++ A++ g +e++++L+e+gad+n
  MMETSP0890-20130614|30056_1 100 DGATPFFAACRGGYTEIAKLLIEKGADPN 128
                  688*************************9 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.00071
    PF13606.1   1 nGnTpLhlAasngrielveaLlen.gad 27 
                  +G++pL +A ++gr+ l+++L+++ +ad
  MMETSP0890-20130614|30056_1 133 DGRSPLWIAGYFGRVHLLRWLIDAvPAD 160
                  79********************975666 PP

>> PF11361.3  Protein of unknown function (DUF3159)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.26     146     168 ..      65      87 ..      63      91 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
    PF11361.3 146 qvpLYladktgaLgvarillgwP 168
                  q pL++a++tg Lgv+++ll wP
  MMETSP0890-20130614|30056_1  65 QSPLFIAANTGKLGVVKLLLRWP 87 
                  78********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 911.95
//
Query:       MMETSP0890-20130614|30058_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47   10.0   3.1       0.46   10.0   0.5    2.2  2  PF14145.1 YrhK-like protein


Domain annotation for each model (and alignments):
>> PF14145.1  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   3.4e-05      0.46      30      55 ..     176     201 ..     168     205 .. 0.86
   2 ?   -1.1   0.1     0.098   1.3e+03      15      34 ..     208     227 ..     202     234 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.4e-05
    PF14145.1  30 elytaavwlFiiGSilflirpvirli 55 
                  +l+++a  lF+ ++ ++l++p+ir i
  MMETSP0890-20130614|30058_1 176 TLRKLAALLFLFAASFYLLGPIIRGI 201
                  57799******************987 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.098
    PF14145.1  15 ggllFliGSilffypelyta 34 
                   ++l l+ Si f  + l ++
  MMETSP0890-20130614|30058_1 208 LAILLLVMSIVFEVNDLSKI 227
                  56777777777765555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.45s 00:00:00.97 Elapsed: 00:00:00.91
# Mc/sec: 663.61
//
Query:       MMETSP0890-20130614|30057_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.84
# Mc/sec: 256.75
//
Query:       MMETSP0890-20130614|30061_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-05   22.8   0.0    6.7e-05   22.3   0.0    1.2  1  PF01963.12 TraB family


Domain annotation for each model (and alignments):
>> PF01963.12  TraB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.9e-09   6.7e-05     139     245 ..     111     262 ..      91     310 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.9e-09
   PF01963.12 139 g...Ledreiqitllral..............sleeqlkllrslldeleesdelseelveawkegdleelmee..........laedk.........aspelyevlldeRnrywaeklkellkgg...gkvvvVVGagHlpGekg.........v 245
                  +    +dr++ +tl+r +              +l   +  l++l+de+ e + +   l +a   +d+++l +               k           +++++v ldeR++  a+k +e++ +    g +v+VV   HlpG+++         +
  MMETSP0890-20130614|30061_1 111 AqtyPVDRRELVTLQRLFiacletvpslvrqgELFSAWTSLSELVDEVLEPARIAIALNKAKDMSDISKLQNRcrggldnffgQ---KntdhtgnqtLIKAVRTVVLDERDQIFAHKYWECASQLgtgGIAVAVVSKHHLPGIQSnwsktepntI 262
                  366677777777777777777777775554444444445566666666666666555555555555555555566666665431...145567888899********************887777777***************986666666651 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.34s 00:00:00.82 Elapsed: 00:00:00.83
# Mc/sec: 984.53
//
Query:       MMETSP0890-20130614|30076_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-21   74.6   0.1    9.1e-21   74.6   0.0    2.0  2  PF02338.14 OTU-like cysteine protease
    1.1e-05   24.8   0.0      0.039   13.1   0.0    2.3  2  PF10275.4  Peptidase C65 Otubain
      0.007   15.5   6.3      0.011   14.9   4.4    1.2  1  PF09309.5  FCP1, C-terminal
  ------ inclusion threshold ------
       0.51    9.7  19.6       0.72    9.2  13.6    1.2  1  PF08597.5  Translation initiation factor eIF3 subunit
       0.75    8.5  23.8       0.94    8.2  16.5    1.1  1  PF07767.6  Nop53 (60S ribosomal biogenesis)


Domain annotation for each model (and alignments):
>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.1       1.6   4.4e+03      33      33 ..      63      63 ..       6     115 .. 0.57
   2 !   74.6   0.0   3.3e-24   9.1e-21       2     126 .]     124     247 ..     123     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.6
                 - CS
   PF02338.14 33 l 33
                 l
  MMETSP0890-20130614|30076_1 63 L 63
                 1 PP

  == domain 2    score: 74.6 bits;  conditional E-value: 3.3e-24
                  ----HHHHHHHHHH-----HHHHHHHHHHSS--HHHH-------------....................-HHHHHHHHHHHHHHTS-EEE-----------------B--TTS-GGGS--S-EEE--BTTB- CS
   PF02338.14   2 gDGnCLfhavsqqlwldhdgrkekheelrealveylrehrelfeefleeee........eeYlkeiskdgewgeeieifalahilrrpiivlkssggealvyikfggkylplekppsiclsspgvlgydgaHy 126
                  +DGnCLf+av +ql l  + ++++h elr++++ey+r+h ++f  f+ +++        e  + +i++++ewg++ e+ ala++l+rpi +++ +++   +          +   ++i+l +++ ++ +g+Hy
  MMETSP0890-20130614|30076_1 124 ADGNCLFRAVQHQLTLLGE-QEYSHIELRKNTAEYMRSHIDDFLAFFVHNDkadplttfELHCTKIRDTSEWGGQPELLALANLLHRPIWIYSKDSPVIKTCD--------NPRLSPIQLAFHRFYYALGEHY 247
                  7**************8886.999**************999999998888888******999******************************888666633332........4566778888888888899998 PP

>> PF10275.4  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.4e-05     0.039       7      60 ..      77     136 ..      70     144 .. 0.72
   2 !    9.9   0.0   0.00014      0.37     134     206 ..     142     217 ..     134     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
    PF10275.4   7 plvsekeplsaLakeyakadpaylkki.......kelkekysgirrvrgDGnCfYrafafs 60 
                  +  +++e+  +La+e a+a+++  +++       ++l++    + ++  DGnC++ra+  +
  MMETSP0890-20130614|30076_1  77 KIARDREKEIQLAQESAEAKKTS-ARTleleainAKLQKAGFMLHEIAADGNCLFRAVQHQ 136
                  44566677777777777755555.344477777777888888899************9877 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00014
    PF10275.4 134 qsdyivvflRlltsaeikenadeykpfideld....lltveefCeqeVepvnkeadnvqikaLaealgipvrveyld 206
                  +++y+ + lR +t+ +++++ d++ +f+  +d    l+t e +C ++++ +++   + ++ aLa+ l  p+ ++  d
  MMETSP0890-20130614|30076_1 142 EQEYSHIELRKNTAEYMRSHIDDFLAFFVHNDkadpLTTFELHC-TKIRDTSEWGGQPELLALANLLHRPIWIYSKD 217
                  45677899*******************99988999999999999.999*9999999999999999999888887655 PP

>> PF09309.5  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   4.4   4.1e-06     0.011     132     211 ..      22     101 ..      13     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.1e-06
                  XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.XXXXXXXX-....-----------...----------------------- CS
    PF09309.5 132 setmPlytlckedlesmdke.vddilGegsd.dsdsekkkkedkeeeeeeaaqqrkqkaPeerresdvrapsssersaaggr 211
                   e m l +  +e+le++d e   + lGe++d d +++ +++   e+++ +aa++rk+k    r+++ + a +s+e +++ +r
  MMETSP0890-20130614|30076_1  22 QEEMDLAARHREELETLDDEeEKETLGEEADiDYEAKARET--LERKKAKAARKRKNKIARDREKEIQLAQESAEAKKTSAR 101
                  5889999999*******87615689*****97777766666..777778888888888887777776666677776666655 PP

>> PF08597.5  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  13.6   0.00026      0.72      17     107 ..      12     107 ..       2     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00026
    PF08597.5  17 k.aavkdkwddE.....dededvkdsWdeeeeeekekekakkaakakakkelkakieekekakkekkekekekkeeeldeedeaaekerlrkleees 107
                  k a +++k+  E     +   + ++ +d+eee+e+  e+a+ + +aka ++l+ k ++k+  k+++k +++++ke +l +e+ +a+k   r le+e+
  MMETSP0890-20130614|30076_1  12 KvAETEAKFTQEemdlaARHREELETLDDEEEKETLGEEADIDYEAKARETLERK-KAKAARKRKNKIARDREKEIQLAQESAEAKKTSARTLELEA 107
                  236788999998676666778999*****************************99.6677777777777777778899999999*******999986 PP

>> PF07767.6  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  16.5   0.00034      0.94     222     321 ..       9     114 ..       1     123 [. 0.56

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00034
    PF07767.6 222 ilekvaeeasrlkemeeglaeeeddeeeeesedesekegfdseke...lsinkpvknkrKtkaqR...nkekrrkele.keakeekelkkkeeqlarlkeikkevae 321
                   ++kvae ++++ + e +la     ee e  +de+eke   +e++   + ++ ++  ++K ka+R   nk++r +e+e ++a+e +e+kk ++   +l++i++++++
  MMETSP0890-20130614|30076_1   9 GKSKVAETEAKFTQEEMDLAARH-REELETLDDEEEKETLGEEADidyEAKARETLERKKAKAARkrkNKIARDREKEiQLAQESAEAKKTSARTLELEAINAKLQK 114
                  44555555555555443333333.444444455555455555555432233333335555565551115566666666244668899999999**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1516  (0.110884); expected 273.4 (0.02)
Passed bias filter:                      594  (0.0434465); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.79
# Mc/sec: 773.51
//
Query:       MMETSP0890-20130614|30078_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-05   23.6   4.1     0.0015   18.7   2.7    2.7  2  PF10199.4 Alpha and gamma adaptin binding protein p34


Domain annotation for each model (and alignments):
>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.51     7e+03      16      36 ..      73      93 ..      72      95 .. 0.81
   2 !   18.7   2.7   1.1e-07    0.0015       2     118 ..     111     189 ..     110     216 .. 0.53

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.51
    PF10199.4 16 mWsglelkdqtaslsnrnasl 36
                  W+gl ++ qt+ l +  +sl
  MMETSP0890-20130614|30078_1 73 IWNGLSIAPQTKLLVSTSDSL 93
                 599999999999888888876 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.1e-07
    PF10199.4   2 kqGieRirEaLethmWsglelkdqtaslsnrnasletereadlaeleaeeekqddsqpastepdksaaeeesasaefdddsddaisdeqneeeegleeadvedlesllsklqaardn 118
                  ++Gi Ri++aL++  Ws +e k +                     +e + ++++d  +  + ++  ++++e+     +             ++ ++ +   ++le+++  +q+ar+ 
  MMETSP0890-20130614|30078_1 111 QDGIPRIVQALQCTLWSTMEHKTHG--------------------QEVTVLSSSDRNNVYSSSSLVHQDNED-----E-------------DDFDNFDLTGDELENIMALVQQARND 189
                  69******************98743....................344444444333322222222222221.....1.............22223334444666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 942.02
//
Query:       MMETSP0890-20130614|30100_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-18   65.8   0.0    4.1e-18   65.6   0.0    1.0  1  PF01168.15 Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF01168.15  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0     3e-22   4.1e-18     122     216 ..       4     100 ..       1     101 [. 0.84

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 3e-22
                  ----SHHHHHHHHHHHHHS.T.EEEEEEBE--SSTTSCSHHHHHHHHHHHHHHHCHCSH..EE-S..--EEE-HHHHHH-GGSTTTSEEEE--TTT--H CS
   PF01168.15 122 RlGvspeeaealaealaal.pglrlrGlmthfaladepdateraqfarfreladeleaag.lrpl..vlslgnSadlllaiahegstmvRpGialyGar 216
                  ++G++p+ea+ la a++++ p+l+l+Glm++  ++  +   + ++f++++++++   +a  l+p    ls+g+S+d++ a  + g+t+vR+G+ ++Gar
  MMETSP0890-20130614|30100_1   4 KGGCPPDEAPNLALAVTQNcPNLQLIGLMCIGKYSGAE-GDASPDFTTLNNCRSAAADALsLNPDtlALSMGMSHDFETAL-EYGATHVRVGSTIFGAR 100
                  99****99**********99**************9643.3455689999888888855554554466*************9.889************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 490.87
//
Query:       MMETSP0890-20130614|30104_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-83  279.2   0.8    3.7e-83  279.0   0.5    1.0  1  PF00465.14 Iron-containing alcohol dehydrogenase
    6.1e-11   41.9   3.6    4.7e-06   25.9   0.1    2.1  2  PF13685.1  Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.048   13.4   0.0      0.079   12.7   0.0    1.3  1  PF01202.17 Shikimate kinase


Domain annotation for each model (and alignments):
>> PF00465.14  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.0   0.5     8e-87   3.7e-83      42     366 .]       2     327 ..       1     327 [. 0.90

  Alignments for each domain:
  == domain 1    score: 279.0 bits;  conditional E-value: 8e-87
                  H...HC---EE.EEEE.E-----HHHHHHHHT.TS-T.T--EEE------HHHHHHHHHHHTT.....................--BEE--SS-S-S-TT-SEEEEE-----EE.EEEE-S.--SEEE--HHHHHHS-HHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHH.HH----HHHHHH.HHHHTT....-----------HHHHHH---G-GGGS----TTT--HHHHH.............................HTTHHHHHHHHHHHHTT---STTT-..--TT....HHHHH----TT-T..TSGSSS---HHHH CS
   PF00465.14  42 lesLeeagiev.tvfdgvepeptleeveeaaa.lareekadvivAvGGGsviDtAKaiallltnp.gelldye.gkakkkkkpalpliaiPTtaGtGsevtplavitdeetkrklslaspkllPdlaivDpeltltlPkrvtaatglDalthaiEayvskkanplsdalaeeairliaenlpravadpedleareqmllastlAGlafsnaglgaaHalahalgglfgipHGeavaillpavlrfnaeaaperyarlaralgvdsegsdeealaeeliealrellkelglptsLkdl..gvte....edldelaeaalkdrrletnpreltaedv 366
                  +esLe+ gi+  ++f+++  ept+e+v+++++ l++++ +d+i+A GGGsv+D+AKa+++l++ + ++l++y+   + + + ++ p+ia PTt+GtGsevt++ v t+  t++k+     + +P++a+vD eltl++P++++a tg+Dal+h +Ea+vskkan +sda+a++a+ +i ++l+ a++   d++ re+m  a+t+AGlaf+na+++++H+++++lg++f+i+HG+++a+l p +  f ++a+++ y ++a+ l        ++ + e+l + l +l  +lglp+ L+++  +++     + ++++a++al++++ ++npr ++++d+
  MMETSP0890-20130614|30104_1   2 IESLEKVGIKDvEIFTDTAKEPTTENVDRLVDkLLEKNTIDCILACGGGSVMDAAKAASVLAECTdKDLASYKaPYDMSGEVEKFPVIALPTTSGTGSEVTKFVVCTHSTTGEKMLCLGSAYVPRVALVDYELTLSVPAKLAAETGIDALCHSMEAMVSKKANWYSDACAKSALSAIGSHLRLACQG--DRNGREAMSRAATMAGLAFGNASVTLIHGMSRPLGAHFHISHGLSNALLCPDITHFSLQAHRSGYSQVAQFLF------PHDPTLEHLPTNLAQLNGQLGLPM-LRQVlsHIKTqeflDLIPRMAKEALASGSPANNPRLPSESDI 327
                  578999999755*******************934556688***********************773558899874455556677*******************************8888888***********************************************************999664..5668******************************************************999999******882......3345689*****************.6664334553348899***********9989****9999886 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1     1e-09   4.7e-06      40      97 ..       3      62 ..       1      66 [. 0.84
   2 !   16.8   0.6   6.5e-07     0.003     101     236 ..      87     232 ..      79     245 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1e-09
    PF13685.1 40 eslkeagv.evevleeleeeadleaveklveal.rekdadlvvavGsGtinDlaKyvsak 97
                 esl++ g+ +ve+++++++e+++e+v++lv++l +++ +d+++a G+G+++D+aK +s  
  MMETSP0890-20130614|30104_1  3 ESLEKVGIkDVEIFTDTAKEPTTENVDRLVDKLlEKNTIDCILACGGGSVMDAAKAASVL 62
                 6677777745789999***************99345779******************976 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 6.5e-07
    PF13685.1 101 pyisvpTaaSmDGyaspgasltvd.ngkkktls.paklPiaiiaDldiikkAPkrliasGfGDllgkitaladwklaeevaeeiaekaaelvqealeklledekdeealkellealalsglam...........srpaSgaeHllShal 236
                  p+i+ pT+      +   +  t++  g k     +a +P + ++D++ + + P +l a    D l+ +   +  k a+ +++ +a++a + + ++l+ + +   d++  +++ +a +++gla+           srp  ga  ++Sh l
  MMETSP0890-20130614|30104_1  87 PVIALPTTSGTGSEVTKFVVCTHStTGEKMLCLgSAYVPRVALVDYELTLSVPAKLAAETGIDALCHSMEAMVSKKANWYSDACAKSALSAIGSHLRLACQ--GDRNGREAMSRAATMAGLAFgnasvtlihgmSRPL-GAHFHISHGL 232
                  5666666555555444444444444677777777899*******************99777799999999999***********************99985..66666677777777777777333333333334444.6666666655 PP

>> PF01202.17  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.7e-05     0.079      52      77 ..      29      56 ..       4      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHS..SEEEE-----TTSHH CS
   PF01202.17 52 levleelleee..naViatGGgavlree 77
                  +++ +lle++  ++++a+GGg+v++++
  MMETSP0890-20130614|30104_1 29 DRLVDKLLEKNtiDCILACGGGSVMDAA 56
                 577899999999*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.67
# Mc/sec: 1255.40
//
Query:       MMETSP0890-20130614|30113_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.97
# Mc/sec: 130.93
//
Query:       MMETSP0890-20130614|30119_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.70
# Mc/sec: 777.10
//
Query:       MMETSP0890-20130614|30118_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-86  288.3   0.0    3.4e-86  288.1   0.0    1.0  1  PF00121.13 Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> PF00121.13  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.1   0.0   2.5e-90   3.4e-86       1     242 [.       1     241 [.       1     243 [. 0.94

  Alignments for each domain:
  == domain 1    score: 288.1 bits;  conditional E-value: 2.5e-90
                  EEEEEEETT-S....-HHHHHHHHHHHHCCCHHTTTEEEEEEE-GGGHHHHHHHC.STTSEEEES--BSS-----TTHHBHHHHHHTT--EEEESEHHHHHHS.-BHHHHHHHHHHHHHTT-EEEEEESCEHHHHHTTHHHHHHHHHHHHHHHTSSTGGGGGEEEEEEEGGG------HHHHHHHHHHHHHHHHHHHHTHHHHHCCSEEE------TTTHHHHHTSTT----EE-HGTTSCHHHHH CS
   PF00121.13   1 kiiigNwKmnk....tleeakellkkllaaklkeekvevvvappflyLesvkkalkeskikvgaQnvsaedsGafTGevsaemlkdlgvkyviiGHSErrqyfgetdeevakkvkaalkagltpvlCvgEtleereagktkevlkeqlkailekldeealknliiAYePvwAIGtgkvatpeeaqevhaairkelaekfskevaeevrilyGGsvnaenakellkqkdvdGlLvGgaslkaesfla 242
                  +i++gNwKmn     t++++ +l++ l  a++   k+ev++ +p+lyLesvk  +k   ++v+aQn+++e +Ga+TGe+s eml+d+gv++viiGHSErr +fgetde +  k+++a++ g+t+v C gE++eere+gkt++vl  ql+ai ++++  ++++l+iAYePvwAIGtg +atp++aqe+ha+ir++la k+s +va++vri+yGGs n++na++l++ +d+dG+LvGgasl+a++f a
  MMETSP0890-20130614|30118_1   1 PIVGGNWKMNAgngtTKATVMDLVNGLNGAAE-P-KCEVFLGVPYLYLESVKASIK-PIFQVAAQNMYKETKGAYTGEISGEMLTDMGVNTVIIGHSERRDIFGETDELLGAKIAKAIDLGMTVVACCGEHKEERESGKTMDVLIPQLQAIADNTN--DWSKLVIAYEPVWAIGTGLTATPQQAQETHAEIRSWLAAKVSPAVADAVRIQYGGSANDKNAADLAAGPDIDGFLVGGASLDAKKFSA 241
                  689*******9777677777777777444444.3.7*******************6.8899***************************************************************************************99888876..58************************************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.96
# Mc/sec: 614.07
//
Query:       MMETSP0890-20130614|30125_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-13   49.3   0.0    5.6e-13   48.4   0.0    1.5  1  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   4.1e-17   5.6e-13       3      90 ..     127     234 ..     125     235 .. 0.96

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 4.1e-17
                  EE----EEE-TT-B--EEEEEEE-EEEEEEE-----EE....................EEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHHCC-H CS
   PF00027.24   3 sfkkgevifkeGdpadslyiilsGkvkvykndedgkes....................ilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrelleknp 90 
                  +f+++ +++  G+ +d+l+i+ sG v  ++++++   s                     + ++++G+++Gel++++++p  +t+++ ++++v+v++r++ +++ +++p
  MMETSP0890-20130614|30125_1 127 TFPADATLYTVGEAGDRLFIVASGVVDFFEYSQEKINStttmpsstlitassthvpprRILRVTRGGVVGELSFFLNRPQRVTARTARPTQVFVLDRDKADAMRAHDP 234
                  79********************************************************999*************************************9988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 778.82
//
Query:       MMETSP0890-20130614|30128_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.8   0.0    0.00039   20.3   0.0    1.2  1  PF02620.12 Uncharacterized ACR, COG1399


Domain annotation for each model (and alignments):
>> PF02620.12  Uncharacterized ACR, COG1399
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.8e-08   0.00039       5      79 ..      99     180 ..      95     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.8e-08
   PF02620.12   5 vegtvtleCdrClepvelpidsdfelllveeeeeaeeeele..eedeeeiileeke.....idlselveeellLalPlkplc 79 
                  v ++v++ C+++  pv   ++ ++ l    + ++++e+e++  +ed+e++++++       +d +el+ ++l L+l+++p+ 
  MMETSP0890-20130614|30128_1  99 VFAVVEQSCVVSGVPVASNVTKRLYLRRRAAFDDENESEDDflDEDDEHLLYNDASsgsivLDAGELLVQFLSLELDPYPRA 180
                  5689****************99977765333333334444455699999999554455566******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.85
# Mc/sec: 659.70
//
Query:       MMETSP0890-20130614|30138_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 219.67
//
Query:       MMETSP0890-20130614|30143_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-26   90.8   0.6    7.3e-26   89.7   0.4    1.6  1  PF10609.4  ParA/MinD ATPase like
    9.2e-19   67.5   0.0    1.4e-18   66.9   0.0    1.2  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
    2.4e-10   40.5   0.0    5.5e-10   39.4   0.0    1.6  1  PF06155.7  Protein of unknown function (DUF971)
    4.2e-08   32.4   0.3    1.5e-07   30.7   0.2    1.8  1  PF09140.6  ATPase MipZ
    1.3e-06   28.2   0.0    1.1e-05   25.2   0.0    2.3  1  PF13614.1  AAA domain
     0.0024   16.8   0.8      0.033   13.1   0.2    2.3  2  PF02374.10 Anion-transporting ATPase
  ------ inclusion threshold ------
      0.011   14.4   3.2      0.057   12.0   0.1    2.4  3  PF03308.11 ArgK protein
      0.017   14.3   0.1      0.051   12.8   0.0    1.8  1  PF06564.7  YhjQ protein
      0.019   14.2   0.1       0.18   11.0   0.0    2.5  2  PF13481.1  AAA domain
      0.049   14.3   0.0       0.29   11.8   0.0    2.3  2  PF13207.1  AAA domain
      0.058   12.8   0.2       0.22   10.9   0.2    1.9  1  PF13500.1  AAA domain
      0.085   12.7   0.0       0.21   11.4   0.0    1.7  1  PF10387.4  Protein of unknown function (DUF2442)
       0.27   10.9   1.6        1.1    8.9   0.0    2.7  3  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF10609.4  ParA/MinD ATPase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.4     7e-29   7.3e-26       1      69 [.     229     297 ..     229     305 .. 0.96

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 7e-29
                  -S-EEEE-------HHHHHHHHH-----EEEE-CCC--HHHHHHHHHHHHCTT------EECT-EEE-S CS
    PF10609.4   1 lDyLliDlPPGtgDehlslvqklpldgavivttpqevaladvrkeiklfkkleipilGvveNmsyfvcp 69 
                  lD+L++D+PPGtgD++l+l+q lp+d a++vttp+++a+adv k+i+lf+ +++p++++veNm+ + +p
  MMETSP0890-20130614|30143_1 229 LDILIVDTPPGTGDAQLTLCQALPIDAAIVVTTPSRLAFADVVKGIDLFDTVNVPVVAIVENMAAVAMP 297
                  8**************************************************************998766 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.3e-21   1.4e-18       1     158 [.     121     292 ..     121     320 .. 0.74

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 1.3e-21
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx...............xxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   1 iaiasgkGGvGKTtlaanLaralakrglrVlliDlDpqannssllgkv....seilkkgeekasal...............lenfeagllae..geeg.lvesllkkalealikeayDvviiDtapglgel..vanalqaadllvvviepekfsvegakrilellerlgkklkilgvvlnkv 158
                  +a+as kGGvGK+t++++La+al++ gl V  +D D+ ++ + +l +v          + e+ ++l                      ++++    +g +v+ ++ ++ ++++    D++i+Dt+pg g+   +  ++   d ++vv++p+ +++ ++ + ++l ++++++  ++ +v n+ 
  MMETSP0890-20130614|30143_1 121 VAVASCKGGVGKSTVSTHLAFALRELGLSVGICDIDVYGPSLPTLVGVvddpT---VRTAEEDPELlepfekagvklmsfgF-----LNPQAaaMMRGsRVSGVIDQLARRVAWRHLDILIVDTPPGTGDAqlTLCQALPIDAAIVVTTPSRLAFADVVKGIDLFDTVNVP--VVAIVENMA 292
                  79**************************************9999988864330...33333333335666666766444331.....333335522334555566666666444459*************97788888889*************99999999999999855..677777765 PP

>> PF06155.7  Protein of unknown function (DUF971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   5.2e-13   5.5e-10      12      86 ..     419     484 ..     409     487 .. 0.80

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 5.2e-13
    PF06155.7  12 LeiefedgeksslsaeeLRvacpcaecrgdkkggellklqagkrdvtitsiepvGnYAlrlvFsDgHdsGiYswe 86 
                  L ++  d e+ +++ + LR++c+ca c +d +++        +  + ++ +++ GnYAl++v+sDgH+s + +++
  MMETSP0890-20130614|30143_1 419 LILSHRD-ETLRFPPQDLRKKCRCAACIQDPPTNI-------PPTLVPIAVSRTGNYALSIVWSDGHQS-LLPFK 484
                  5555554.5699****************7766655.......7899999******************87.66665 PP

>> PF09140.6  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   1.4e-10   1.5e-07       2     153 ..     120     292 ..     119     312 .. 0.55

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.4e-10
    PF09140.6   2 vivlgnekGGsGksttavhvavaLlkkgakvaaiDlDlrqrtltryl...enraataerkglelpvp.........kllalkeevkeveeeesaevaeleeavaele.aeaDfiviDtP.Gsdsa...lsrlahsladtlv.tPlnDsfvD....fDllakvdpetlkvkrpsl 153
                  v+ ++  kGG Gkst++ h+a aL + g++v+  D+D+   +l   +   ++ +  + +++ el  p         ++  l+ + + + ++  ++   ++++ ++++ ++ D++++DtP G+ +a   l +     a  +v tP   +f D    +Dl+ +v+   +++ ++  
  MMETSP0890-20130614|30143_1 120 VVAVASCKGGVGKSTVSTHLAFALRELGLSVGICDIDVYGPSLPTLVgvvDDPTVRTAEEDPELLEPfekagvklmSFGFLNPQAAAMMRGSRVS-GVIDQLARRVAwRHLDILIVDTPpGTGDAqltLCQALPIDAAIVVtTPSRLAFADvvkgIDLFDTVNVPVVAIVENMA 292
                  788999*******************************9887765544111555555555555555552111110002222333444444444444.445555555542456999999964544331112232223333333256555555522224666666665555555555 PP

>> PF13614.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-08   1.1e-05       1     132 [.     119     243 ..     119     266 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.1e-08
    PF13614.1   1 kvigvySpvggegkttlAlnlaqslaenrkkvLlldleeysgslalflgleekfglsdllynkkqgkenlatkrldellsqlalngldlla.pprspedlselspeeveqLlerlke.....rYdvvilDlgsllded 132
                  +v++v S++gg+gk+t++ +la +l+e +  v + d + y++sl  + g   + ++  +  ++             ell+ +++ g++l++ ++ +p+++ ++  + v+ ++++l++     + d++i+D+++++ ++
  MMETSP0890-20130614|30143_1 119 RVVAVASCKGGVGKSTVSTHLAFALRELGLSVGICDIDVYGPSLPTLVGVVDDPTVRTAEEDP-------------ELLEPFEKAGVKLMSfGFLNPQAAAMMRGSRVSGVIDQLARrvawrHLDILIVDTPPGTGDA 243
                  799**************************77****************9887774444444444.............4555555555555442699**********************99999999******9987544 PP

>> PF02374.10  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   3.1e-05     0.033       6      32 ..     124     150 ..     119     156 .. 0.84
   2 ?    1.5   0.0      0.11   1.1e+02     115     139 ..     217     242 ..     171     292 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-05
                  E--------HHHHHHHHHHHHHTTS-E CS
   PF02374.10   6 fgGKGGVGKttvsaatavklseqgkkv 32 
                   + KGGVGK+tvs+ +a  l e g +v
  MMETSP0890-20130614|30143_1 124 ASCKGGVGKSTVSTHLAFALRELGLSV 150
                  478****************99998776 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
                  HHHHHHHHHC--SSEEEEE---.--- CS
   PF02374.10 115 fdellklvkeeeydvvifDtAP.TGh 139
                   d+l + v  ++ d++i+Dt+P TG+
  MMETSP0890-20130614|30143_1 217 IDQLARRVAWRHLDILIVDTPPgTGD 242
                  5677888888999********97776 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.043        45      80     121 ..      10      53 ..       8      57 .. 0.82
   2 ?   12.0   0.1   5.4e-05     0.057      26      67 ..     115     157 ..      89     177 .. 0.74
   3 ?   -3.8   0.1       3.7   3.9e+03     113     150 ..     244     281 ..     239     284 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.043
                  -----TTTT-TTEEEEE..E---------HHHHHHHHHHHHH-- CS
   PF03308.11  80 rlRlerlavdegvfiRs..lasrGalGGlakktreviklldaaG 121
                  r+Rl+ +++  gv i    + ++G +GG+++  +e++  ld  G
  MMETSP0890-20130614|30143_1  10 RVRLAVVEALRGVLIEDsdVVTKGWVGGVSATRKEILVELDISG 53 
                  7888888889999997522689**********999998888776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5.4e-05
                  ----EEE--B--.-----HHHHHH---HHHH----EEEEEE-- CS
   PF03308.11  26 aGralvvGltGv.PGaGkstlveklikelrrrGkrvavlavDP 67 
                   G  +vv +  +  G+Gkst+  +l+  lr+ G  v++  +D 
  MMETSP0890-20130614|30143_1 115 RGVKRVVAVASCkGGVGKSTVSTHLAFALRELGLSVGICDIDV 157
                  466677777654168************************9994 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 3.7
                  HHHHHHH----EEEEE------HHHHHHTT-SS-EEEE CS
   PF03308.11 113 viklldaaGfDvilvetvGvGqsevdiievadtvvlvt 150
                   ++l++a+ +D  +v t     +  d+++ +d++  v 
  MMETSP0890-20130614|30143_1 244 QLTLCQALPIDAAIVVTTPSRLAFADVVKGIDLFDTVN 281
                  57899999999999988877777777777777766555 PP

>> PF06564.7  YhjQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-05     0.051       3      38 ..     120     155 ..     118     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-05
    PF06564.7   3 vlaLqGvrGGvGttsllaaLgwalqelgesvLviDl 38 
                  v+a+   +GGvG++++   L++al+elg sv + D+
  MMETSP0890-20130614|30143_1 120 VVAVASCKGGVGKSTVSTHLAFALRELGLSVGICDI 155
                  6788889***********************998875 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.18      32     150 ..     118     236 ..      89     237 .. 0.76
   2 ?   -0.2   0.0      0.47   4.9e+02      68      99 ..     365     396 ..     345     436 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
    PF13481.1  32 rgsltllaGapgtGKStlalqlaaava.tGepflg....pvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagv.gslrltaddrrdalltadlerllaaieelegpdlvviDt 150
                  +  +++    +g+GKSt+ ++la a+   G ++ g    +v   ++++l+   +d+  ++++   ++l+   +++ + l+   ++   ++ +a   r+ ++ + +++l++++   +++d++++Dt
  MMETSP0890-20130614|30143_1 118 KRVVAVASCKGGVGKSTVSTHLAFALReLGLSV-GicdiDVYGPSLPTLVGVVDDPTVRTAEEDPELLEPF-EKAGVKLM---SFgFLNPQAAAMMRGSRVSGVIDQLARRVAW-RHLDILIVDT 236
                  56677777899***************9666655.5598866667899*********988888888777765.34444444...47778888889999999***********999.66*******8 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.47
    PF13481.1  68 vpepgrVlylsaEdseaelrrrlsailaaldd 99 
                  ++++g +l+ls++d+ +e + r++ ++  l++
  MMETSP0890-20130614|30143_1 365 RSDAGEILFLSNDDTLSESELRAKDTFLSLGN 396
                  45788889999999888888888887766522 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.29       9      57 ..     129     184 ..     127     241 .. 0.75
   2 ?   -0.7   0.0         2   2.1e+03      74      74 ..     349     349 ..     273     438 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00027
                  T---HHHHHHHHHHS...TEEE..EEGGGB-..-GGGS-.B-----B--SSGGGB-H CS
    PF13207.1   9 GsGKsTlakeLaerl...glpv..lslddll..reeglk.elddgereskdadadll 57 
                  G+GKsT+++ La +l   gl v  +++d  +    ++l   +dd+  ++ ++d +ll
  MMETSP0890-20130614|30143_1 129 GVGKSTVSTHLAFALrelGLSVgiCDIDV-YgpSLPTLVgVVDDPTVRTAEEDPELL 184
                  9**********999777777766699999.444666666333355544444444444 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2
                  H CS
    PF13207.1  74 v 74 
                   
  MMETSP0890-20130614|30143_1 349 G 349
                  0 PP

>> PF13500.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00021      0.22       3     167 ..     121     291 ..     119     316 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00021
    PF13500.1   3 imvtgtdtgvGKTlvslgLvsalkrkgnkvg.....yfKPvqtgle...sdsdaelvqellgldetheeaeplalse..plsphlaaaregstid..lekivske.lekardivvvEGagglavpltseslnadiakslglpvlLVargglg.tinhtllaiealrsrgvrilgviink 167
                  + v+++  gvGK++vs+ L+ al + g +vg     ++ P    l+   +d  +++++e   l e+ e    + l++  +l+p++aa   gs +   ++++  ++  +   di++v++  g++      + +  + ++l ++  +V+++ ++ ++++++  i+++ + +v++++++ n 
  MMETSP0890-20130614|30143_1 121 VAVASCKGGVGKSTVSTHLAFALRELGLSVGicdidVYGPSLPTLVgvvDDPTVRTAEEDPELLEPFEK-AGVKLMSfgFLNPQAAAMMRGSRVSgvIDQLA-RRvAWRHLDILIVDTPPGTG------DAQLTLCQALPIDAAIVVTTPSRlAFADVVKGIDLFDTVNVPVVAIVENM 291
                  679999*****************9999999998999555555555511155555555555555555443.33433331167999999999999988877774.44134445999999877775......56778888888887777666555378999999999999999999999886 PP

>> PF10387.4  Protein of unknown function (DUF2442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.21       2      34 ..     459     491 ..     458     498 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0002
                  EEEEE-S---EEEEETT--EEEE-TTTS.STT- CS
    PF10387.4   2 vsVkptddyrlyvtfddGregvvdlspllprlk 34 
                  ++V  t++y l + ++dG + +++++ l+p  +
  MMETSP0890-20130614|30143_1 459 IAVSRTGNYALSIVWSDGHQSLLPFKALIPAYA 491
                  6788999*********************95444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.2   1.3e+03      20      34 ..     129     143 ..     122     153 .. 0.83
   2 ?    8.9   0.0     0.001       1.1      11      31 ..     230     250 ..     218     282 .. 0.75
   3 ?   -2.7   0.0       4.4   4.7e+03      44      58 ..     484     498 ..     477     499 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.2
    PF13245.1  20 GtGKTttlaaiiaal 34 
                  G GK+t+ ++++ al
  MMETSP0890-20130614|30143_1 129 GVGKSTVSTHLAFAL 143
                  88*****99998776 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.001
    PF13245.1  11 pllvvtGgPGtGKTttlaaii 31 
                   +l+v+ +PGtG +++ ++ +
  MMETSP0890-20130614|30143_1 230 DILIVDTPPGTGDAQLTLCQA 250
                  579**********98887755 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 4.4
    PF13245.1  44 svllvaptgraakrl 58 
                  + l+ a   raa+rl
  MMETSP0890-20130614|30143_1 484 KALIPAYAERAADRL 498
                  578889999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.81
# Mc/sec: 1482.19
//
Query:       MMETSP0890-20130614|30164_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 475.85
//
Query:       MMETSP0890-20130614|30162_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 647.37
//
Query:       MMETSP0890-20130614|30184_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-17   62.7   3.0    2.7e-17   62.1   2.1    1.3  1  PF04130.8 Spc97 / Spc98 family


Domain annotation for each model (and alignments):
>> PF04130.8  Spc97 / Spc98 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   2.1     2e-21   2.7e-17     448     543 .]       2      97 ..       1      97 [. 0.87

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 2e-21
    PF04130.8 448 klkrvefvLekvwqelkkrak.ksgssrrkrepqlrkiqllrhkmlhfvdslqtYlqtdviesswselqeklakakdldeliraHdayLdsilrqcl 543
                  ++kr e++L +vw  ++ +   ++++s + ++ +l k + lrh+mlhf++++ +Yl+++vie+  ++l++ ++ +++ld+  + Hd++Ld +lr cl
  MMETSP0890-20130614|30184_1   2 RIKRLERSLLQVWSNHMATNIlLENKSSG-LRAKLAKPFHLRHRMLHFIQNYAYYLMFEVIETRHTHLRDTIDASSTLDDATANHDRFLDLVLRDCL 97 
                  79*************99554453344233.33557777********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.73
# Mc/sec: 571.19
//
Query:       MMETSP0890-20130614|30196_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       162  (0.011849); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 185.99
//
Query:       MMETSP0890-20130614|30207_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   11.9   0.2        0.1   11.9   0.1    1.1  1  PF05350.7 Glycogen synthase kinase-3 binding


Domain annotation for each model (and alignments):
>> PF05350.7  Glycogen synthase kinase-3 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   7.5e-06       0.1      18      66 ..       2      48 ..       1      64 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.5e-06
    PF05350.7 18 eeeddsfllLeqsvtlgssgevdaLvakiGeaLqLdaaqdspaspsaap 66
                 eee +  +lLe s+  g ++++d+L  k  ++  ++aa +++a++++a 
  MMETSP0890-20130614|30207_1  2 EEEAEGLILLEESIQTG-TQQIDQLSQKANDTA-FHAAAKAEAAATRAT 48
                 899999**********9.9******99988886.555666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      563  (0.0411791); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.70
# Mc/sec: 229.37
//
Query:       MMETSP0890-20130614|30203_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-13   51.1   0.0    3.4e-13   49.8   0.0    1.7  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.5e-17   3.4e-13      22     157 ..      15     140 ..       3     141 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.5e-17
                  CC--B-----HHHHHHHTHHHH.TTHCESEEEEESSHHHHHHHHHHCCCCEEEEEE.GGGSHHHH----.TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.CHHHHHHHHHHHHHHHHH.HCTTTSEEEEEE-TTHHHH CS
   PF00300.17  22 sdvpLtekGreqarelgkkLkr.adlqidavytSplkRaiqTaeilleeldipiiqeprLrerdfgewe.glpkaevkeelpeeyekwkrdkkefrppegesladvyeRvapfleelie.akdkgenvlivsHggvlra 157
                   d+pLte+G+ qa+e+g+ L + +++q++++++Spl R++ Ta  ++++l++p++  p+L    + +++ g ++ ++ +    ++++              s  d+ +R+ + +++ i+  ++  +  l+v+H+  +r 
  MMETSP0890-20130614|30203_1  15 FDPPLTENGKLQAQEAGRMLNSiEGIQFEHIFSSPLARTLSTASEIAQVLRLPVTVVPGLASCAAAVAKvGINHVDLLSSE--AMKALCA-----------SIVDIDYRAPRNFTAAINyITTLYQPALVVTHREGIRE 140
                  5679*************9988889************************************999998788888887777664..4555544...........44444444444444444333455567788888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 738.08
//
Query:       MMETSP0890-20130614|30204_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.71
# Mc/sec: 1140.80
//
Query:       MMETSP0890-20130614|30217_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-37  127.1   0.0    6.8e-37  126.5   0.0    1.3  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
    8.2e-14   51.4   1.5    1.4e-13   50.6   1.1    1.3  1  PF02403.17 Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> PF00587.20  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0     1e-40   6.8e-37       1     172 [.     186     360 ..     186     361 .. 0.95

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 1e-40
                  HHHHHHHHHHHHHHHCCT-EEEB--SEEEHHHHHH---TTTHHHHCEEB..TT---SSEEE-SSTHHHHCTTCCCCEECTCCG-SEEEEE-EEEE---S....STT..--S-SEEEEEEEEEEE-CCCHHHHHHHHHHHHHHHHHHCT-GGEEEEEEETTTCHCCHSEEEEEEEEHCC CS
   PF00587.20   1 lknniiqfwrekfieeegflevdtPiltpeevlkasGhvdkfademykv..kktgeeelyLrPetaqgifllfkkllesnyrklPlklaqigkvfRnEi....sprsGliRvReFtqaeieifvdpeksneeleellalikqfleklgieklrfrqstsgelahyakdtwdlevwtes 172
                  l+++i+ f  ++ + ++gf e ++P+++++ +l+++G+  kf+++++++  ++ g+++ +L+P++++++++lf+ +l s  ++lP+kl++ +++fR E+    ++ +GliR ++F ++e+ ++v+pe+++ ++ ++l++++ +l++l++ ++r++q ++g+++++a+ ++dlevw+++
  MMETSP0890-20130614|30217_1 186 LERAIMCFCLDQAV-SAGFIETSVPLIVSRSTLEGTGQLPKFEQDLFRLatHQVGGQDAFLIPTAEVPLTNLFSGELIS-AQDLPIKLCANTPCFRAEAgsygRDVRGLIRQHQFPKVELVSIVHPEDAHATHTHMLNHVESLLQQLEL-PYRVVQLCAGDIGFSAASCYDLEVWLPA 360
                  6799999*******.88*******************************9333445599********************9.889******************************************************************.*************************987 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   1.1     2e-17   1.4e-13       4     107 ..      15     120 ..      13     121 .. 0.97

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 2e-17
                  HHHHHH-HHHHHHHHHH-..TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--- CS
   PF02403.17   4 ikliRenpeavkeklkkRg.edkedvdelleldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleaeleklllsiPNi 107
                  ++ +Ren + vk++l++Rg  d + vd+l el e r e+  + +e+ ++r+els+e+gk+ k++  ++++l+ae+++ +   +++e+e +e+e ++ +ll ++PN 
  MMETSP0890-20130614|30217_1  15 LRTMRENGDVVKAHLQARGsSDLAIVDRLGELFELRAEAGRAQDEALRKRKELSAEVGKLIKEGkTNTDDLKAEAAHWAHVAAEKEKEKSEAESQVADLLPRLPNF 120
                  6789***************99999****************************************99***************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      410  (0.0299883); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.97
# Mc/sec: 1153.71
//
Query:       MMETSP0890-20130614|30261_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   14.2   0.1      0.054   13.1   0.1    1.7  1  PF03766.8 Remorin, N-terminal region


Domain annotation for each model (and alignments):
>> PF03766.8  Remorin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     4e-06     0.054      32      55 ..      65      88 ..      39      90 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4e-06
    PF03766.8 32 ekkaeesadkKssegSiDRDvvLA 55
                  +  +e+ ++K   + +D+Dv++A
  MMETSP0890-20130614|30261_1 65 AQSQPEPGTAKHRAAAFDKDVIIA 88
                 5678******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:01.00
# Mc/sec: 215.67
//
Query:       MMETSP0890-20130614|30262_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-27   94.0   2.8      5e-27   94.0   2.0    3.3  2  PF05022.7  SRP40, C-terminal domain
  ------ inclusion threshold ------
      0.042   12.4  18.2      0.059   11.9  12.6    1.2  1  PF12569.3  NMDA receptor-regulated protein 1
      0.058   11.3  16.3      0.073   10.9  11.3    1.2  1  PF02724.9  CDC45-like protein
      0.061   11.6  33.4      0.075   11.3  23.2    1.1  1  PF10243.4  Microtubule-binding protein MIP-T3
      0.066   10.9  21.2      0.074   10.7  14.7    1.1  1  PF05110.8  AF-4 proto-oncoprotein
      0.075   11.8   5.0      0.081   11.7   3.5    1.3  1  PF02535.17 ZIP Zinc transporter
      0.092   11.7  20.8       0.12   11.4  14.4    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein
       0.12   10.4   5.9       0.17    9.9   4.1    1.2  1  PF07217.6  Heterokaryon incompatibility protein Het-C
       0.31   10.0  12.8       0.51    9.3   8.9    1.4  1  PF13203.1  Putative metallopeptidase domain
       0.43    9.8  28.0       0.66    9.1  19.4    1.3  1  PF07423.6  Protein of unknown function (DUF1510)
       0.54    7.7  13.5       0.69    7.4   9.3    1.1  1  PF13779.1  Domain of unknown function (DUF4175)
       0.68    7.4  15.1       0.79    7.2  10.5    1.0  1  PF12722.2  High-temperature-induced dauer-formation protein
        1.2    8.4  28.6          2    7.7  19.8    1.3  1  PF14153.1  Spore coat protein CotO
        1.4    7.6   7.0        1.6    7.4   4.8    1.2  1  PF03189.8  Protein of unknown function, DUF270
        1.7    8.2  20.3       0.16   11.6   9.9    1.9  2  PF02862.12 DDHD domain
        2.8    6.6  20.1        3.8    6.1  13.9    1.2  1  PF04514.7  Bluetongue virus non-structural protein NS2
        4.2    7.2   7.3        1.1    9.1   2.5    2.0  2  PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
        8.7    5.8  30.8        1.2    8.6  15.1    2.2  2  PF10278.4  Mediator of RNA pol II transcription subunit 19
        9.8    4.2   7.8         11    4.0   5.4    1.1  1  PF03552.9  Cellulose synthase


Domain annotation for each model (and alignments):
>> PF05022.7  SRP40, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       3.2   2.3e+03       5      36 ..     116     147 ..     112     155 .. 0.60
   2 !   94.0   2.0   6.9e-30     5e-27       1      72 []     164     239 ..     164     239 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 3.2
    PF05022.7   5 riklekieledeelkdnsYkakaddygekAae 36 
                  ++++e+ + ++ee k  +  ++a+++ +kA+ 
  MMETSP0890-20130614|30262_1 116 KVQEEEDDQAKEEDKISAAVKAAEEWMTKASA 147
                  56655555455544444444444789888875 PP

  == domain 2    score: 94.0 bits;  conditional E-value: 6.9e-30
    PF05022.7   1 kpfkrikleki..eledeelkdnsYkaka..ddygekAaedLivvrGkgFrkeKnKkKrgSYrGGeIdsavkSikF 72 
                  kpf+r++ e++   ++de+lkdn+Y+++   ++yg+kA+++L +vrGk+Fr+eK+KkKrgSYrGG+Id +++SikF
  MMETSP0890-20130614|30262_1 164 KPFSRVNDEEWlqVIHDEKLKDNTYAGTYgdAGYGHKASQKLVQVRGKQFRHEKTKKKRGSYRGGTIDLKSNSIKF 239
                  69*****66652245799*********998889******************************************9 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  12.6   8.2e-05     0.059     355     442 ..      34     131 ..      20     162 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.2e-05
    PF12569.3 355 tlraYvdllrledrlrshpfyvka.AkeAikvYlkLhdkpkakeeeeeeaana..........elsaaerkklrkkakkaekkaekeeaekaekeeekk 442
                  +lr   + l+ e +l ++ + ++    eA++v+l+ + ++++kee+++e++            ++s++e+kk +k+++ +e k ++ee ++a++e++  
  MMETSP0890-20130614|30262_1  34 QLRKCAKALKKEAELDDNSSVTRIpLFEAVEVWLAQKQQESKKEEQSNEEEERtsspkkkkkkNESHEEKKKKKKRKRDEEDKVQEEEDDQAKEEDK-I 131
                  6777777888888888888888762458999999999999887777665544422233333323333333333333333333333333333222222.1 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  11.3    0.0001     0.073     105     221 ..      69     237 ..      38     239 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0001
    PF02724.9 105 gdieeelekeeeerdayealvemkeeeeeesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnessl...........................................................................akslrrrrrrereekeevlekyYaqgtsygesisl 221
                  +++                       +e++++e+s++e+++ ++++++++k++s++++++++++++++ed+ q+++  + ++                                                                           +k  + r ++ r+ek+++ +  Y+ gt+  +s s+
  MMETSP0890-20130614|30262_1  69 QKQ-----------------------QESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQEEEDDQAKEedkisaavkaaeewmtkasasptptktnsakerepgkpfsrvndeewlqvihdeklkdntyagtygdagyghkasQKLVQVRGKQFRHEKTKKKRGSYRGGTIDLKSNSI 237
                  222.......................2233333333333333333333333333333333333333333333333333322244444555555566778888888888888888999999999999999999999999999999999999999988777788888888999999999999988888887775 PP

>> PF10243.4  Microtubule-binding protein MIP-T3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  23.2    0.0001     0.075      91     209 ..      64     164 ..      31     229 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0001
    PF10243.4  91 kaaktsrakeekneskkeeekrkekkkeekkkkeekekeeekerkqkeelkekrkpkekekekeKkkeeekdrekekererkkaserekkekkkdsknkkkdkekekkkeksrksekgk 209
                  ++ ++++++e+k+e++ +ee+++    ++kkkk+e+ +e  k++k+k ++ e+ k +e+e+++ K++ + + + k  e+  +kas+++   k +  + k++++              gk
  MMETSP0890-20130614|30262_1  64 EVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKNESHEE--KKKKKKRKRDEEDKVQEEEDDQAKEEDKISAAVKAAEEWMTKASASPTPTKTN--SAKEREP--------------GK 164
                  445555555555555544444444433333333333333..33333333344444444444444444444444444444444444444443322..2222222..............11 PP

>> PF05110.8  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  14.7    0.0001     0.074     746     861 ..      55     164 ..      41     233 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0001
    PF05110.8 746 sRiPgkpskkgsrakkaekdslskpkkqtsetasekssskakrKrkneeekekveekkskleeksssrsasssssakessenkesrksseekkeellpsplsplsss..sqkvekpar 861
                  +RiP     ++++   a+k+++sk+++q++e++   ss+k k+K+   +e++k ++k+++ ee+ +++   +  +ake+ +     ++ ++ +e + ++++sp++ +  s k  +p +
  MMETSP0890-20130614|30262_1  55 TRIP---LFEAVEVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEED-KVQEEEDD-QAKEEDKIS---AAVKAAEEWMTKASASPTPTKtnSAKEREPGK 164
                  4554...478888888999999998888888888888888766665555555555555555555.44432222.222222222...23333344444444444333300333333333 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.5   0.00011     0.081      99     170 ..      63     130 ..       7     189 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   PF02535.17  99 ltmikesdahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkesela 170
                  ++ ++ +++++ ++++++ +e+++t+s++++k+k+     +++e++++++++ d++ + +e++++++++e +
  MMETSP0890-20130614|30262_1  63 VEVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKN----ESHEEKKKKKKRKRDEEDKVQEEEDDQAKEEDK 130
                  44444444444444444444455555555555444....344444444444555555555555555444443 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  14.4   0.00016      0.12     247     401 ..      56     218 ..      43     239 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00016
   PF01690.12 247 ktpreghllvnsateevlepeeeessseretsktpsaeesesda..ekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskee......pseklvesdkpeltpgaskeaevaatvlaaesvkedrdplekreksdkapskv 401
                  ++p  + + v+ a++++ +++ee+s++e+e ++ p+++++++++  ek++++++k+de+++v++e+ ++a+eed+ ++  +a +e  ++    + +++++s++e       s  + e++ + +++++ k++  a+t+ +a+  ++ +++l + + ++   +k 
  MMETSP0890-20130614|30262_1  56 RIPLFEAVEVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKNESheEKKKKKKRKRDEEDKVQEEEDDQAKEEDKISAAVKAAEEWMTKASASPTPTKTNSAKErepgkpFSRVNDEEWLQVIHDEKLKDNTYAGTYGDAGYGHKASQKLVQVRGKQFRHEKT 218
                  4444455556666666666666666666666666666666555544677777778888888888887777777754444444444444333333333333333334555444555566777788999999999999999999888888877544422222222 PP

>> PF07217.6  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.1   0.00024      0.17     511     598 ..      35     122 ..      10     137 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00024
    PF07217.6 511 lddilevfhhpalrdeaeeirre.mfetveeWveeksdeekelrekLssegvkegknhkegekdeghgsgkseelakkakegsgkksgs 598
                  l ++ +++ ++a  d+++ + r+ +fe+ve W+ +k++e+k+ +e+  +e  ++ + +k+++k+e+h+++k++++ k+ +e + ++++ 
  MMETSP0890-20130614|30262_1  35 LRKCAKALKKEAELDDNSSVTRIpLFEAVEVWLAQKQQESKK-EEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQEEED 122
                  5677788888888887766665449*******9988876663.3333333334444444555555555555555444444322222222 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.9   0.00071      0.51     147     224 ..      70     146 ..      28     162 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00071
    PF13203.1 147 dkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksapeaeaeearewrerlarale 224
                  ++q++++++++++++e  ++ ++++kkn ++  ek+k+ +++++e+++++e+++ + ++e++   a ++ e+ + +++
  MMETSP0890-20130614|30262_1  70 KQQESKKEEQSNEEEERTSSPKKKKKKN-ESHEEKKKKKKRKRDEEDKVQEEEDDQAKEEDKISAAVKAAEEWMTKAS 146
                  3455566666666655555555544444.4555888888888899999998888888888877666555555555444 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  19.4   0.00091      0.66      54     138 ..      69     155 ..      42     165 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00091
    PF07423.6  54 sedeekteeeevkeeekeaakdedkeddsesekkdeeseeeeeeekekkeeeseedekete..ekeesnvekeitnpeWkpvGTeQt 138
                  ++++e+++ee+ +eee+ +++ ++k++++es+++++++++ +++e++k++ee+++++ke++      + +e+ +t+ +  p +T+ +
  MMETSP0890-20130614|30262_1  69 QKQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQEEEDDQAKEEDkiSAAVKAAEEWMTKASASPTPTKTN 155
                  445555555555555555555555555333333333333333334444444333333333300344455666677777777777654 PP

>> PF13779.1  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.3   0.00095      0.69     629     708 ..      70     148 ..      40     161 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00095
    PF13779.1 629 gqqgqgqqgqqqgqgqgqqqgqqgeegqqeeeslaerqqalreeleklkkelkgeggeageaaeealgeAeeaMedAeea 708
                  +qq+ ++++q++++++ +++ ++++++++++e+ +++++  r+e +k ++e  ++ +e  ++ + a + Aee M +A  +
  MMETSP0890-20130614|30262_1  70 KQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQEEEDDQAKE-EDKISAAVKAAEEWMTKASAS 148
                  3444444444455555555666666666666666777777777777777776666555.78999**********999865 PP

>> PF12722.2  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  10.5    0.0011      0.79     592     740 ..      22     168 ..      14     180 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0011
    PF12722.2 592 vfeqlkelilsiskelkeksnqkkkkeaksesisnleksnssestrsesnnndsrsasssevpeekkslaitddeddaseenstseasaeqsvnsvdkqlevleekdrekesalsleeeeenlalrp.ksptglsskskeklpktedwve 740
                  v+ ++ e++l+ +   k+ + +kk +e  ++s+++     +  ++   +++++s++ ++s+++ee +s+ ++++++++s e+++++++ ++  +++dk  e+ + +++e+++++   +  e++++++ +spt+++++s+++ ++ +++++
  MMETSP0890-20130614|30262_1  22 VLYSVHEFLLDCQL-RKCAKALKKEAELDDNSSVTRIPLFEAVEVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKR--DEEDKVQEEEDDQAKEEDKISAAVKAAEEWMTKAsASPTPTKTNSAKEREPGKPFSR 168
                  55566666665554.2333333333333333333333333333333333333333333333333222222222222222222222222222..345666677777777777777777777777766414677777777777666666654 PP

>> PF14153.1  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  19.8    0.0028         2      35     139 ..      70     174 ..      40     179 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0028
    PF14153.1  35 kkkkkeeekensnekkkekeeeqkeekaeveseeeaeeaesedeqesseqeeiaqeveeeeeeeeekqeevekekeaekeeteleeek.............qkkerkKsfkeMnleEK 139
                  k++++++e+++++e++ + ++++k++k e  +e+++++  + de+ ++++ee  q  ee++  +++k  e+                k             +++e  K+f++ n eE 
  MMETSP0890-20130614|30262_1  70 KQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQEEEDDQAKEEDKISAAVKAAEEWMT-------------KasasptptktnsaKEREPGKPFSRVNDEEW 174
                  22222222222222222222222222222222222222222222223333332222222222223333222233.............2333445555555599999******999985 PP

>> PF03189.8  Protein of unknown function, DUF270
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.8    0.0022       1.6      88     142 ..      64     135 ..      55     222 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0022
    PF03189.8  88 rvlveeakkeitkieqkkepeeeesallessrqstleaaktvekte....qeklekev.............v 142
                  +v ++++++e +k eq++e+ee++s+ ++++++++++++k+++k++    ++k+++e              v
  MMETSP0890-20130614|30262_1  64 EVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRkrdeEDKVQEEEddqakeedkisaaV 135
                  444555555555555555555555544444444444444444444412212222222122222223222222 PP

>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.9   0.00022      0.16      67     165 ..       9     117 ..       8     134 .. 0.56
   2 ?   -0.7   2.5       1.3   9.3e+02     130     183 ..     118     170 ..     112     227 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00022
   PF02862.12  67 lvdpalsslkpvsipstkksklgaleekesltnigkavkqsvesltsslsegiassl.rnsslslssedeeseeeseasklsqks.........ksekkkeseeetkee 165
                  +++ ++ ++kp ++ +     l + +  + ++ ++k+ +   +s+ + +  + a ++ + +++++s+++e+s+ee+e++++ +k+         k++kkk++++e+ + 
  MMETSP0890-20130614|30262_1   9 CIADKFLNMKPSEVLYSVHEFLLDCQLRKCAKALKKEAELDDNSSVTRIPLFEAVEVwLAQKQQESKKEEQSNEEEERTSSPKKKkkknesheeKKKKKKRKRDEEDKV 117
                  68889999*******************9*******99999999555555555444443444444444444444444444443222122221111111222222222222 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.3
   PF02862.12 130 lssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekreelklraln 183
                  +++ed++++ee+++s + + +++  +k+s+ + + +++++ ke++  + ++++n
  MMETSP0890-20130614|30262_1 118 QEEEDDQAKEEDKISAAVKAAEEWMTKASA-SPTPTKTNSAKEREPGKPFSRVN 170
                  333333333333333333222222222222.22222222222334444444444 PP

>> PF04514.7  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  13.9    0.0052       3.8     177     281 ..      41     141 ..      32     160 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0052
    PF04514.7 177 aikeerlmespdsdedeakldeeakemtpetskqekeeerreavekrleerveklkldleekredlkkeqeeeekvetesddedeegedseeeetksesyiteeY 281
                  a k+e    + +s + +++l e+++++  ++++++k+ee++++ e+r    ++k k +  +++++ kk++++ e+ ++++   +e+++ +ee++ + +    ee+
  MMETSP0890-20130614|30262_1  41 ALKKEAEL-DDNSSVTRIPLFEAVEVWLAQKQQESKKEEQSNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQE---EEDDQAKEEDKISAAVKAAEEW 141
                  44444333.4567788999************9999999999997777666655522222222222222222222222222...2233333333333333333444 PP

>> PF09716.5  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5    0.0015       1.1      34      54 ..      79     108 ..      17     110 .. 0.52
   2 ?   -2.7   0.1       7.2   5.2e+03      43      43 ..     209     209 ..     188     222 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0015
    PF09716.5  34 g.........tskalkkiddelekkkknkK 54 
                  +         ++k+ kk +++ e+kkk+kK
  MMETSP0890-20130614|30262_1  79 QsneeeertsSPKKKKKKNESHEEKKKKKK 108
                  022223343357999999999999988888 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 7.2
    PF09716.5  43 d 43 
                  +
  MMETSP0890-20130614|30262_1 209 R 209
                  2 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  15.1    0.0017       1.2     120     172 ..      69     120 ..      58     137 .. 0.54
   2 ?    2.5   1.1      0.13        92      94     164 ..     147     222 ..     142     231 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0017
    PF10278.4 120 skvkdalseetlsdseteegfekkkkkkkkedDkerkkkkkekkkkkkrkspe 172
                  +k++++++ee  s++e e +   kkkkkk+e  +e+kkkkk k++++++ + e
  MMETSP0890-20130614|30262_1  69 QKQQESKKEEQ-SNEEEERTSSPKKKKKKNESHEEKKKKKKRKRDEEDKVQEE 120
                  34444333333.33334555555666666555555555555555444333322 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.13
    PF10278.4  94 aGPlpeqyrllkkqePkkksk....ekhkkskvkdalseetlsdseteegfekkkkkkk.kedDkerkkkkkekkk 164
                  a P p +    k++eP k  +    e   +  + ++l+++t + + ++ g+ +k  +k  +   k+ +++k  kk+
  MMETSP0890-20130614|30262_1 147 ASPTPTKTNSAKEREPGKPFSrvndEEWLQVIHDEKLKDNTYAGTYGDAGYGHKASQKLvQVRGKQFRHEKTKKKR 222
                  5666666677766666665440000233333344477788888888999999888776634444444444444443 PP

>> PF03552.9  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.4     0.016        11     300     355 ..      78     131 ..      59     184 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.016
    PF03552.9 300 kektvivaslclgkkkkkkskkkekkkkakk..keseaeifeledieeglegdeeeks 355
                  ++++     +  +kkkkkk++++e+kkk+kk  +++e +++e e+ ++   ++ee+k 
  MMETSP0890-20130614|30262_1  78 EQSNEEEERTSSPKKKKKKNESHEEKKKKKKrkRDEEDKVQE-EEDDQ---AKEEDKI 131
                  222222333444444444444444333333200333333322.22222...2333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2595  (0.189804); expected 273.4 (0.02)
Passed bias filter:                      857  (0.0626829); expected 273.4 (0.02)
Passed Vit filter:                       267  (0.019529); expected 13.7 (0.001)
Passed Fwd filter:                        74  (0.00541252); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.40u 0.45s 00:00:01.85 Elapsed: 00:00:01.12
# Mc/sec: 508.96
//
Query:       MMETSP0890-20130614|30258_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-08   34.4   0.2    2.7e-08   33.6   0.2    1.4  1  PF00498.21 FHA domain
  ------ inclusion threshold ------
       0.01   14.1   0.1      0.011   14.0   0.1    1.0  1  PF07093.6  SGT1 protein


Domain annotation for each model (and alignments):
>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.2     4e-12   2.7e-08       3      45 ..     158     199 ..     156     218 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 4e-12
                  E-E-TTSSS---TTTS-TTCEEEEEEETCEEEEEEECST--EE CS
   PF00498.21   3 iGRssdcdivlddpsiSrkHalikydeggkfyleDlgSknGtf 45 
                  +GRs+ +div+ d+++Sr+H++i++ +g k+ + D  S+ Gt 
  MMETSP0890-20130614|30258_1 158 VGRSRYNDIVVADETVSRVHCIIVRSSG-KIGVFDGWSSYGTI 199
                  8***************************.******99*****5 PP

>> PF07093.6  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.6e-06     0.011     342     458 ..      15     144 ..       9     231 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.6e-06
                  xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx........x RF
    PF07093.6 342 aekyyqes....skaksapgeeilkllqqllsleelqkeeqelepeDddswLnispdeLdsllqekqgskkdsskqkeeqekekeleevsekmkeflsk.ksdleGaefadeldadddddd........e 458
                  a ++y       +++++a +e ++ l +ql s++    +++++++e+dd  +  + deL +  q +   ++d ++q+ e++   +l++++  + + l+  +  ++  +  de+d+++   +        +
  MMETSP0890-20130614|30258_1  15 ATEQYPPAeqkrRRTAEANVEDLDVLTDQLQSVSLAISAAMDNKDEEDDVGFGSGMDELRKWYQTEVFAASDAQQQRWEERRWAFLGQLQHALRNPLNHtVFHYKIEQRCDEEDEMTTAAAeletriynQ 144
                  666665555555899999999999999999*******************************************999999988888999999999999997777776676666666665544555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      462  (0.0337917); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.74
# Mc/sec: 848.44
//
Query:       MMETSP0890-20130614|30265_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.69
# Mc/sec: 823.10
//
Query:       MMETSP0890-20130614|30268_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-49  166.1   0.0    9.2e-49  165.8   0.0    1.1  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    1.2e-22   80.5   0.0      7e-22   78.0   0.0    1.9  1  PF13423.1  Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.0   1.3e-52   9.2e-49       2     272 .]       9     329 ..       8     329 .. 0.87

  Alignments for each domain:
  == domain 1    score: 165.8 bits;  conditional E-value: 1.3e-52
                  ----------THHHHHHHHHHHTSHHHHHHHHTTHCCH....H-.TTHHTTTHHHHHHHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-......................................-SCHHHHC-EEEEEEEEETTCEEE...............EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SE.EE-GGGBSCHHH--BTTSSCEEEEEEEEEE--.-TT---EEEEEESS-TT-EEEEETTEEEEE-HHHHTTC.........EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxx RF
   PF00443.24   2 gvtGleNlGntCYmnsvlQcLvsipelrdyllryeervaeinee.neleeeaqlaraladlfkklvenssekkavsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqkaeds..................................ndslitdlfkgqlksrlkclecknv...............kvklkrlPeiLiihlkRfkyseerssnkKlnekvefple.LdlssyvneekkeeseskpkkYeLvavvvHsG.slssGHYvayvknneknkWlkfdDetvtevkeeevlke.........saYvlfY 272
                  +++G++N+GntCY+ns+lQ+L++++ +rd +l++ +++++ +++  + +e  ++  ala +f++l    + +    ++e++k l+   +      QqDa+E+l+ +L+++++      +k + ++++ + +                                  ++ ++ + +k ++k+ +  ++ +                  +++ r+P+iL++hlkRf +++er    K+n+ v fpl  Ldls ++ ++  + ++++p  Y+L+avv+H G + +sGHY+a+v    +++Wl+fdD++vt+v+ ++v+ke         saY+l Y
  MMETSP0890-20130614|30268_1   9 SYAGIRNQGNTCYLNSILQSLFHVRGFRDAILENAHENEPKKRRfWQRKEIPTVEIALAGVFEAL----AHNVTAGTKELTKSLGVDPNI-----QQDAQEYLRLVLEEISSTQGISTSKYYLGQSERYIRitdhehdklvdqgykgppletrhtepfydlsldiKQGNVLQHLKTSIKELMTPQHLEGDaqwktkqygprdalmGLDFIRFPPILVLHLKRFAFDFERGHVAKINAPVAFPLSnLDLSDLLHDD--ALKSDPPPLYRLHAVVCHLGsTGESGHYYALVDPLCDGRWLRFDDNRVTPVTVNDVIKEglggpgalgSAYLLQY 329
                  689********************************999755444145666678999*********....566666888999999988776.....*****************9999888899999888833456678889999999999999988886666666655555555555555555555555559999999*******9***********************************************977..789999999***********999**************************************************98 PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0     1e-25     7e-22       1     295 []      11     302 ..      11     302 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.0 bits;  conditional E-value: 1e-25
    PF13423.1   1 aGlennlnncYlnaLLqllfftldlfeailkhs.e..........cskencllceLgflfnmLdsstkgtpcqasnllralstipeaaalgeqqdvqeanrFileqlsle..lltlkvdifhererdkseaesslselfgtklisqnrciscqaekvkeesllnlelpyppsekgiklenileeslnseknke..ikcesckkk..ssaevakkftslPpiLgIclkrynek.efg.akrlntkvdiple.lrlphfiqddeqenekplsgefkyeLqavVchigdsltsghlvSlirvaeseksqWylFnDfrv 295
                  aG  n++n+cYln++Lq+lf +  ++ ail+++ e          +++      +L+ +f+ L    ++++  +++l+++l+  p+      qqd qe  r +le++s+   ++t+k ++       +se    + +  + kl+ q+ +     e+ ++e++++l+l  ++ +  + l+  ++e++  +  +       + k++    a +   f + PpiL+++lkr + + e g   + n  v +pl+ l+l+  + dd  +     +   +y+L+avVch g++++sgh+ +l+      + +W +F+D+rv
  MMETSP0890-20130614|30268_1  11 AGIRNQGNTCYLNSILQSLFHVRGFRDAILENAhEnepkkrrfwqRKEIPTVEIALAGVFEALA---HNVTAGTKELTKSLGVDPN-----IQQDAQEYLRLVLEEISSTqgISTSKYYL------GQSERYIRITDHEHDKLVDQGYK-GPPLETRHTEPFYDLSLDIKQGNVLQHLKTSIKELMTPQHLEGdaQ--WKTKQYgpRDALMGLDFIRFPPILVLHLKRFAFDfERGhVAKINAPVAFPLSnLDLSDLLHDDALK----SDPPPLYRLHAVVCHLGSTGESGHYYALVDPL--CDGRWLRFDDNRV 302
                  6999*****************************7466777776433233334445566677766...8888888888888887765.....59**************9862256666544......55777778888888888888888.88889****************99999999999****9777775332..2333334467************************9889889*******************999854....55999***********************9995..7779*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:01.03
# Mc/sec: 867.81
//
Query:       MMETSP0890-20130614|30279_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   27.8   0.3      0.023   14.1   0.0    3.2  2  PF01126.15 Heme oxygenase
  ------ inclusion threshold ------
       0.99    9.0   3.6       0.69    9.5   0.3    2.4  2  PF12434.3  Malate dehydrogenase enzyme


Domain annotation for each model (and alignments):
>> PF01126.15  Heme oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00011      0.78      27      58 ..      49      80 ..      39      96 .. 0.80
   2 !   14.1   0.0   3.4e-06     0.023      97     203 ..     140     244 ..     108     246 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00011
                 HH---S-HHHHHHHHHHHHHHHHHHHHHHHHC CS
   PF01126.15 27 flkgsvdkeaYkkllanlyelykalEeeleen 58
                 +l+   ++++Y+  +++++ +y alEe+l+ +
  MMETSP0890-20130614|30279_1 49 ALRSISSEKEYAIAVKQILPVYAALEEALDVQ 80
                 4778889*********************9876 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.4e-06
                  HHHHHHHHHHHHHHHHC-GGGHHHHHHHHH.HHHHT-HHHHHHHHHHHCT-BCC..B-GGGGGS-TT-SSHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHH CS
   PF01126.15  97 spavqkyverlekiaaeepellvAhaYtry.lgdLSGGqllkkiaaralelpee..ceatafyefesisdrkvfkqeYreaLdslelddearaavveeAreaFrlnievv 203
                   pa ++y++r++  a  ++ ll++h++ ry l dL     + +  a+al++p+    ++t++ +     +++   ++  +a+d++ ld++++ a++ eA++a +ln ++ 
  MMETSP0890-20130614|30279_1 140 PPASRQYIRRIRAAATLDGDLLLGHLFIRYsLIDLRFSPRYTEPWAEALQFPPLssLGGTQIRK-----EKNDLLESLSHAIDRQFLDEDKQTAIIIEAQRACELNAKLY 244
                  57999*************************6667776666666667777776640022232222.....44456667777899999********************9876 PP

>> PF12434.3  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         1   7.1e+03       4      11 ..     273     280 ..     272     281 .. 0.78
   2 ?    9.5   0.3    0.0001      0.69       3      22 ..     308     329 ..     306     331 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1
    PF12434.3   4 dskedlKe 11 
                   s  d++e
  MMETSP0890-20130614|30279_1 273 TSSNDNRE 280
                  68899997 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0001
    PF12434.3   3 tdskedlKeQqraAL..RkAAL 22 
                  + s++++ +Qq++A   R+ AL
  MMETSP0890-20130614|30279_1 308 SNSTAENQQQQKEATstRRSAL 329
                  78***********943366666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1216  (0.0889409); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.66
# Mc/sec: 1307.10
//
Query:       MMETSP0890-20130614|30294_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:01.09
# Mc/sec: 206.66
//
Query:       MMETSP0890-20130614|30292_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-38  129.0   0.1    1.6e-37  128.4   0.1    1.2  1  PF09384.5  UTP15 C terminal
    3.1e-05   23.5   1.1        0.3   10.9   0.4    4.1  4  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF09384.5  UTP15 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.1   2.3e-41   1.6e-37      15     148 .]     264     397 ..     249     397 .. 0.93

  Alignments for each domain:
  == domain 1    score: 128.4 bits;  conditional E-value: 2.3e-41
    PF09384.5  15 eekkkkklkkydklLkkfryseALdavLvkekkpevtvavleeLrrRgaLrkALsgrdeetleplLnfllknitdpryvsvlvdvanvildiYaev.igkspvlekmlqrLrekveeevelqqealeikGmlell 148
                  +++++k lk+yd++L+kf+y++ALd++L ++++p +++++++eL +R+aL  AL+ rde  leplL fl  ++t+pry+++l++van++ld+Ya + +g  p ++++l ++++ +++e++ q+++l+++G l+ l
  MMETSP0890-20130614|30292_1 264 TNQSNKLLKSYDQALRKFNYAQALDEAL-ATRDPVIVLSIMRELEHRNALTSALARRDEIRLEPLLAFLGTHLTNPRYAPLLIQVANTFLDLYAHSaLGTVPAVDDALAKIHSLLRTEINAQHSLLNLRGHLQAL 397
                  45588999********************.****************************************************************965278888****************************99875 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.4   4.4e-05       0.3      21      39 .]      16      34 ..       7      34 .. 0.84
   2 !    6.9   0.0   0.00078       5.3      12      36 ..      50      76 ..      43      79 .. 0.80
   3 ?   -0.8   0.0      0.22   1.5e+03      16      39 .]      87     121 ..      84     121 .. 0.77
   4 ?   -0.4   0.0      0.16   1.1e+03      15      36 ..     140     160 ..     128     161 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.4e-05
                 SSSTEEEEEETTSEEEEEE CS
   PF00400.27 21 pdgpllasgSrDgtirlWd 39
                  + ++las+ +Dg+i +Wd
  MMETSP0890-20130614|30292_1 16 KNTQMLASSFDDGSIAIWD 34
                 3479**************9 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00078
                 SSEEEEEEESS..STEEEEEETTSEEE CS
   PF00400.27 12 spVtcvafspd..gpllasgSrDgtir 36
                  p++ +a+s +  + +++ gS+Dg+i+
  MMETSP0890-20130614|30292_1 50 EPIRTLAYSVEysPYVILAGSYDGNIY 76
                 577777777777788**********96 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.22
                  EEEEESS............STEEEEEETTSEEEEEE CS
   PF00400.27  16 cvafspd............gpllasgSrDgtirlWd 39 
                  ++ f+p+             +lla ++   ++ ++d
  MMETSP0890-20130614|30292_1  87 SLLFNPSvknspieninlnAQLLAACGG-TNVMVFD 121
                  6778888888888888888888998887.7777765 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.16
                  EEEEEESSSTEEEEEETTSEEE CS
   PF00400.27  15 tcvafspdgpllasgSrDgtir 36 
                  t+va     ++++s + D t+r
  MMETSP0890-20130614|30292_1 140 TAVALGTK-HRVLSTGLDATVR 160
                  55554445.8999*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:01.00
# Mc/sec: 1020.85
//
Query:       MMETSP0890-20130614|30323_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   40.3   0.0    3.1e-10   39.1   0.0    1.5  2  PF02114.11 Phosducin


Domain annotation for each model (and alignments):
>> PF02114.11  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.055   7.5e+02      24      40 ..       2      18 ..       1      38 [. 0.78
   2 !   39.1   0.0   2.2e-14   3.1e-10      94     207 ..      61     174 ..      50     175 .] 0.91

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.055
   PF02114.11 24 gpkgvindwrkfkqles 40
                 g kg + ++r fk++e 
  MMETSP0890-20130614|30323_1  2 GIKGQLKQYRYFKRMEY 18
                 77899999999998875 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 2.2e-14
   PF02114.11  94 dkdkddeeflrkyrkqrmdemrqklskgprfkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvigas.drfsrdvlpallvyka 207
                  d + +d+ef+  +r +r+de++++ s  prf+ + +  s  q++  id e+   + +vh+++  ++ +  l++ l+ la+    + f  +       s + f + vlp l++y++
  MMETSP0890-20130614|30323_1  61 DDEFEDDEFMTAFRARRIDELKRNAS-RPRFGSMRQCVSKAQYIAAIDNEDSRVITIVHLFDTSLPSSRHLEALLVQLASRRSDICFLSMTIEEAECSqHEFDNSVLPILVLYRS 174
                  56789****************99876.6***********************************************************99998877666157************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 655.25
//
Query:       MMETSP0890-20130614|30316_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-21   76.0  27.2      2e-21   76.0  18.9    2.4  2  PF07690.11 Major Facilitator Superfamily
    1.2e-11   43.7   6.9    1.2e-11   43.7   4.8    2.4  3  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0  18.9   2.9e-25     2e-21      11     354 .]      30     500 ..      16     500 .. 0.71
   2 ?   -1.3  12.4     0.093   6.3e+02      24     165 ..     354     530 ..     328     549 .. 0.65

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 2.9e-25
   PF07690.11  11 arsilgpalplalaedlgispseigw....lltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpk.eergralgllsagfslGailgpllggllasslg........WravFlilailsllaavlvllllprepperkrkspaeel.................................................................................................rkepaplvpawklllkppvlwillialllfffvfsg.........lltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllal...lllllaalglallaft........................ssavwlllvlvliGfglglv...fptllalasdla..ppeerGtasglfntagslggalgp 354
                  a ++++p++   l  + g+sp+ +g+    ++++y+lg a+++ l+G++sd++Grr v+ +++l +a+++l l fa +l+   ++ r++ Gl+  +l+ +  ++++d++++ + +++a++ll++++slGai+gp +gg+l+ ++         +  + + +ail ll+a ++++l+p   + ++ +++++                                                                                                    +ep+++++    ++ + vl      ++    +  +         l+ + p+      gls     agl++g+++l+++ +  ++    +r+ r  +++l+    ++++l+al++ +   +                        + ++ ++++++++Gf  +      +++++l+++ +    ++ G+ +g+++++ + g++lgp
  MMETSP0890-20130614|30316_1  30 ALNLVLPFAR-DLVLAVGVSPDDAGLaaavVTGVYGLGLALGARLWGSMSDKYGRRFVMGISALSSAVSILGLGFAKTLF-SCILIRFIGGLCN-GLICVLKSAVSDIVTDtKGQSQAFSLLQVASSLGAIVGPTIGGMLLGIYHsstkltnqFFFPCFSCAILQLLLATIGIILFPS-SHRPQQPNSKPLItnsgttllgkksikeyqrfrmspqvqkamqsamdgdtigltalekkakpkkkistsvfeadsssdikndtkleddvhgnkklfvydvgssdkrrfkiHHEPSAKIS----FRLSAVL-----NAF----AALAdemanvaesLSLTAPT--SNGAGLS--DSAAGLTFGMGGLLMLLFIAFGLPKFQRFFRGSQIALFQfaeISFALTALLFPI---IcfipssnnnqhnyqmnffiaapkpQIPIKQICLVIILGFLNSASataLISSNVLCQQALiqDSSNIGKGNGFVQSLIATGRVLGP 500
                  3333444444.4566699********66655555***********************************55555988888.9***********5.88888888888888888*****************************7777888876665555556666666666665566633.33333333444447788999999999999***************************999999999999999999999998888888888888888777555544444332222222222....2222222.....222....22223333444679999999..*******..589999999999999777666666666655533333333000333333333333...234488889998888888888877777777777888888844444466555555555555555579******************98 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.093
   PF07690.11  24 aedlgispseigwlltlyslgyaiasllaGrlsdrf..Grrr.vlllglllfalglllll....fa..ss.......................lwalllvlrvlqGlga.galfpagaaliadwfpkeergralgllsagfslGailgpllgg....llasslgWravFlilailslla 165
                  ++  g+s s++g+ +++ +l++++++ ++ +  +rf  G    ++ ++ + fal+ +ll+    f+  s+                       +  l+++l +l ++ a +++ ++++   a +   ++ g+++g++++ ++ G +lgpl++g    ++++ ++  a+   +a+l l+a
  MMETSP0890-20130614|30316_1 354 SNGAGLSDSAAGLTFGMGGLLMLLFIAFGLPKFQRFfrGSQIaLFQFAEISFALT-ALLFpiicFIpsSNnnqhnyqmnffiaapkpqipikqIC-LVIILGFLNSASAtALISSNVLCQQALIQDSSNIGKGNGFVQSLIATGRVLGPLAAGatfdFFVHVFSSKATIGPFAFLILVA 530
                  3335799999999999999999999999999999976766666777888888888.333333444354224566688887777777777666555.69999999999984444444444444444559999999999999999999999999966666665666555544444444444 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   4.8   1.8e-15   1.2e-11      48     195 ..      56     206 ..      13     241 .. 0.91
   2 ?   -1.6   0.1     0.099   6.8e+02     176     194 ..     403     421 ..     355     434 .. 0.65
   3 ?   -3.1   1.5      0.28   1.9e+03       2      97 ..     447     538 ..     446     546 .. 0.67

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.8e-15
   PF00083.19  48 sglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglgl.nktsn....adgwrillglqlvpalllllll.lflpeSp 195
                    ++++++ +g + G+ + g ++d++GR+ ++ ++++ ++++++  ++ak   ++   i+ R+i Gl+ Gli+vl +   + ++ +k +++  sl q+a ++G++v+  ig  l + + +    ++++ +++++++++ lll+ ++ ++ p+S 
  MMETSP0890-20130614|30316_1  56 AAVVTGVYGLGLALGARLWGSMSDKYGRRFVMGISALSSAVSILGLGFAK---TLFSCILIRFIGGLCNGLICVLKSAVSDIVTDTKGQSQAFSLLQVASSLGAIVGPTIGGMLlGIYHSstklTNQFFFPCFSCAILQLLLATIGiILFPSSH 206
                  568999********************************************...9******************************************************99988867777789999**************998765526677775 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.099
   PF00083.19 176 lqlvpallllllllflpeS 194
                  +++++++ll+ +++f+p+S
  MMETSP0890-20130614|30316_1 403 ISFALTALLFPIICFIPSS 421
                  4566666666677777766 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.28
   PF00083.19   2 alvaalggflfGYdtgvigatltlikfaknfglltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaak 97 
                  +lv++lg +     t++i++ +  ++  ++   +  k+        ++li+   ++g l  +  + ++++ f+ k ++   ++l +++ +  ++a 
  MMETSP0890-20130614|30316_1 447 CLVIILGFLNSASATALISSNVLCQQALIQDSSNIGKGN----GFVQSLIATGRVLGPLAAGATFDFFVHVFSSKATIGPFAFLILVALFSYGLAR 538
                  566666666666666666666666665554444444432....35678888888888888888888888888888888888888888777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:01.25
# Mc/sec: 1171.34
//
Query:       MMETSP0890-20130614|30333_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   14.5   1.4      0.031   14.4   1.0    1.1  1  PF07336.6 Protein of unknown function (DUF1470)


Domain annotation for each model (and alignments):
>> PF07336.6  Protein of unknown function (DUF1470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.0   2.3e-06     0.031      47     108 ..      10      72 ..       2      79 .] 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.3e-06
    PF07336.6  47 aallaaaraLRealrrlfaaaaagdepaadalallnrllaeaparprlaa..ddgdwrlrlara 108
                    ++++++a Realr + a+++++++++ +al+  +++ +ea+     ++  + +  ++ ++++
  MMETSP0890-20130614|30333_1  10 SVMVDRVLATREALRKAKAERRTRRQLR-RALDQAQKMSEEASISLSSSQtsPSKSNEVTVHPH 72 
                  333799***************9999986.7***********99655555546444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1495  (0.109348); expected 273.4 (0.02)
Passed bias filter:                     1027  (0.075117); expected 273.4 (0.02)
Passed Vit filter:                       116  (0.00848449); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:01.26
# Mc/sec: 150.25
//
Query:       MMETSP0890-20130614|30330_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.1   0.2       0.16   10.6   0.1    1.2  1  PF10216.4 CO2 hydration protein (ChpXY)


Domain annotation for each model (and alignments):
>> PF10216.4  CO2 hydration protein (ChpXY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   1.2e-05      0.16     102     167 ..     167     232 ..     158     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.2e-05
    PF10216.4 102 seefkeaaekaikaklkknplllllnklfPdfllelvrqlayysaLGqfWrvmsdiflelsdryde 167
                  +e+ ++ + +++++  ++  +++ +++ f d  +e +r     +++G+fW+  +d++ +l ++ ++
  MMETSP0890-20130614|30330_1 167 AEDLQALTLQLVNQTAEQRSMVKNMHSAFIDKEKEFIRLRYKAKMMGLFWNAEQDLYQKLLRKRQH 232
                  5677788888999999999**************************************999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       798  (0.0583675); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:01.14
# Mc/sec: 754.33
//
Query:       MMETSP0890-20130614|30336_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-26   92.3   0.0    5.3e-26   91.0   0.0    1.7  1  PF00588.14 SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> PF00588.14  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   3.9e-30   5.3e-26       2     142 .]     172     337 ..     171     337 .. 0.88

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 3.9e-30
                  ---EEES-S-------HHHHHHH------EEE-.--S-TTSHHHHHHC---TTTS--EE-S----HHHHHHHH....----E-------EGGGS-TT.....................S-EEEEE--------HHHHHH-S--EE-----------HHHHHHHHHH CS
   PF00588.14   2 livvldeiedpgNlGaiaRtaaafgaselilvkprsvdllnkkakrasagalellelkvvksleealkdlkee....glkviatslkgkslreielk.....................ekvalvfGnEdkGlsnellekadelvkIpmsgeveSLNvavAvailly 142
                  li++ld+i++++N+G+i+Rta+++ ++e+i ++   + l ++k+++++ ga+e +  ++++s++eal dlk++    +l ++a++ ++++++ i+ +                       +al++GnE +G++ +ll ++d++v+Ip+ g+ +S+NvavA++i++y
  MMETSP0890-20130614|30336_1 172 LILILDNIRSAENVGSIFRTADCARCQEIITCGFTPNPLSTSKIQKTAFGAEESISSRHISSTKEALLDLKQKyqhdELLIWALETHDTAITHINSPlptlhhdtdpsdekgekrkrkVYLALLLGNEVTGVDLDLLHLVDAVVEIPTFGSKNSMNVAVAAGIVIY 337
                  89*******************************99999999**************************99998842212556899889999997744444666777788888988886666799*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.73
# Mc/sec: 1125.96
//
Query:       MMETSP0890-20130614|30337_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-28   97.2   4.7    8.1e-11   41.6   0.1    3.5  3  PF00249.26 Myb-like DNA-binding domain
    8.8e-25   86.4   7.4    1.5e-15   56.9   1.2    3.7  3  PF13921.1  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.017   15.1   4.3          4    7.5   0.4    3.6  3  PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
      0.033   14.1  14.8        1.5    8.9   0.7    3.9  4  PF13837.1  Myb/SANT-like DNA-binding domain
      0.089   12.8   0.2       0.25   11.4   0.0    1.8  2  PF03481.8  Putative GTP-binding controlling metal-binding


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.8e-09   7.7e-06       2      48 .]     131     183 ..     130     183 .. 0.97
   2 !   41.6   0.1     3e-14   8.1e-11       1      46 [.     189     234 ..     189     236 .. 0.97
   3 !   30.2   0.0   1.1e-10     3e-07       2      46 ..     243     285 ..     242     286 .. 0.96

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.8e-09
                  TSS-HHHHHHHHHHHHHTTS-.......HHHHHHHCTTTS-HHHHHHHHHHHT CS
   PF00249.26   2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 
                  grWT  Ed  +++ +++ + +       W+++a+   +gR++k c +rw+++l
  MMETSP0890-20130614|30337_1 131 GRWTRMEDATIKKFIEENPDDlemnalFWEKVAKACHTGRSAKACEERWNQVL 183
                  8******************99*****************************975 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 3e-14
                  TTSS-HHHHHHHHHHHHHTTS-..HHHHHHHCTTTS-HHHHHHHHHH CS
   PF00249.26   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                  +gr+++eEde + ++ +  G++ +W+ Ia+ +  gRt+kqc++rwq+
  MMETSP0890-20130614|30337_1 189 KGRFSEEEDETIRKLAQDDGNKsDWRFIASQVS-GRTAKQCRERWQN 234
                  79*******************************.************9 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 1.1e-10
                  TSS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHHHH CS
   PF00249.26   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                  g W+++Ed ll  a+ ++G+  W  + r ++ gR+ ++ k+rw++
  MMETSP0890-20130614|30337_1 243 GEWSQDEDALLRAAHDRFGNA-WGQVVRALP-GRSQNMAKNRWNS 285
                  78*******************.*********.***********96 PP

>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   2.8e-10   7.7e-07       1      57 [.     133     197 ..     133     197 .. 0.87
   2 !   56.9   1.2   5.4e-19   1.5e-15       1      60 []     192     253 ..     192     253 .. 0.96
   3 !   20.5   0.1   1.2e-07   0.00034       1      41 [.     245     285 ..     245     298 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.8e-10
    PF13921.1   1 WtdeEdeiLlklveeygnd.......WseIaeelg.rRtplacqdrwknkLrpkisrapwtkeed 57 
                  Wt  Ed +++k+ ee+ +d       W ++a++ +  R+++ac +rw++ L+  ++++ +++eed
  MMETSP0890-20130614|30337_1 133 WTRMEDATIKKFIEENPDDlemnalfWEKVAKACHtGRSAKACEERWNQVLSRGLYKGRFSEEED 197
                  ***************96633444667*******6335**************************98 PP

  == domain 2    score: 56.9 bits;  conditional E-value: 5.4e-19
    PF13921.1   1 WtdeEdeiLlklveeygn..dWseIaeel.grRtplacqdrwknkLrpkisrapwtkeedqkL 60 
                  +++eEde+++kl ++ gn  dW+ Ia++  g Rt+++c++rw+n+L+p +++++w+++ed +L
  MMETSP0890-20130614|30337_1 192 FSEEEDETIRKLAQDDGNksDWRFIASQVsG-RTAKQCRERWQNSLDPTLKQGEWSQDEDALL 253
                  689*************99889********88.****************************986 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.2e-07
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeel.grRtplacqdrwkn 41 
                  W+++Ed  L+  + ++gn W ++ ++l g R+++  ++rw++
  MMETSP0890-20130614|30337_1 245 WSQDEDALLRAAHDRFGNAWGQVVRALpG-RSQNMAKNRWNS 285
                  ***************************88.**********98 PP

>> PF10545.4  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.4    0.0015         4      27      78 ..     157     215 ..     146     217 .. 0.79
   2 ?    5.7   0.1    0.0055        15      26      51 ..     210     234 ..     197     238 .. 0.83
   3 ?    3.1   0.0     0.036        99      27      58 ..     262     292 ..     247     298 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0015
    PF10545.4  27 eawaeiaeelgeklpeedckkkwknL..Rdqyrrelkkre.....rkasgelkkskwry 78 
                    w+++a+ + +  +++ c+++w++   R  y+    ++e     + a+++++ks wr+
  MMETSP0890-20130614|30337_1 157 LFWEKVAKACHTGRSAKACEERWNQVlsRGLYKGRFSEEEdetirKLAQDDGNKSDWRF 215
                  57*********99***********97334557777766667777778888888888886 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0055
    PF10545.4  26 eeawaeiaeelgeklpeedckkkwkn 51 
                  +  w+ ia+++    ++++c+++w+n
  MMETSP0890-20130614|30337_1 210 KSDWRFIASQVS-GRTAKQCRERWQN 234
                  578********5.48899******98 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.036
    PF10545.4  27 eawaeiaeelgeklpeedckkkwknLRdqyrr 58 
                  +aw ++ + l+   +++ +k +w++   +y  
  MMETSP0890-20130614|30337_1 262 NAWGQVVRALP-GRSQNMAKNRWNSNARRYAG 292
                  79********7.4666789*****99999875 PP

>> PF13837.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7    0.0017       4.6      31      64 ..     153     183 ..     121     189 .. 0.74
   2 ?    8.9   0.7   0.00054       1.5      30      62 ..     206     234 ..     188     237 .. 0.75
   3 ?    5.9   0.0    0.0046        13       4      63 ..     245     309 ..     242     312 .. 0.68
   4 ?   -3.7   0.1       4.4   1.2e+04      25      36 ..     327     337 ..     316     340 .. 0.37

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0017
                  S--HHHHHHHHHHHHH------HHHHHHHHHHHH CS
    PF13837.1  31 kknkelWeevaeamaergykrspkqCkdKwenLk 64 
                    n+  We+va+a++     rs+k C+++w+++ 
  MMETSP0890-20130614|30337_1 153 EMNALFWEKVAKACH---TGRSAKACEERWNQVL 183
                  445668999999885...5799*********875 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00054
                  SS--HHHHHHHHHHHHH------HHHHHHHHHH CS
    PF13837.1  30 kkknkelWeevaeamaergykrspkqCkdKwen 62 
                     nk++W+ +a++++     r++kqC+++w+n
  MMETSP0890-20130614|30337_1 206 DDGNKSDWRFIASQVSG----RTAKQCRERWQN 234
                  45566789999998875....789*******98 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0046
                  S-HHHHHHHHHHH--..----TTT.........SS--HHHHHHHHHHHHH------HHHHHHHHHHH CS
    PF13837.1   4 WteeetraLieawgerllelrfqe.......ggkkknkelWeevaeamaergykrspkqCkdKwenL 63 
                  W+++e  +L  a  +r+ +++ ++       ++++ +k+ W + a++ a +++  s  +C +K + L
  MMETSP0890-20130614|30337_1 245 WSQDEDALLR-AAHDRFGNAW-GQvvralpgRSQNMAKNRWNSNARRYAGENFGLSSPECVEKAKAL 309
                  6666654443.3334333332.223556666677778888***********9999999999998876 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 4.4
                  TTT..SS--HHH CS
    PF13837.1  25 fqeggkkknkel 36 
                  ++ +++kk+k +
  MMETSP0890-20130614|30337_1 327 ISARSSKKKK-H 337
                  2222333333.3 PP

>> PF03481.8  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         4   1.1e+04      17      31 ..      97     111 ..      90     111 .. 0.66
   2 ?   11.4   0.0   9.1e-05      0.25      22      91 ..     327     396 ..     305     411 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4
    PF03481.8  17 kekeeapkaPGmkyk 31 
                  ++k+e p +PG k k
  MMETSP0890-20130614|30337_1  97 TNKNEPPISPGAKRK 111
                  22577899***9975 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 9.1e-05
    PF03481.8  22 apkaPGmkykHYaPkakvvlv..eaiak.llegkkvgllaseslkvvlslgsrkdleeaaanLFaaLrelDee 91 
                      + +k+kHY  k+ + l+  e+ ++ +l++++  +l+    ++++s gs + l +aa++ F+ L+e D++
  MMETSP0890-20130614|30337_1 327 ISARSSKKKKHYTTKKGMPLMlnESEEErILRESTESILTL---SHSISGGSLDALVSAASQCFNELKESDDS 396
                  4457789********98888732322221333222223444...356677999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:01.32
# Mc/sec: 1043.87
//
Query:       MMETSP0890-20130614|30358_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-09   35.8   0.0    1.2e-08   35.0   0.0    1.5  1  PF01467.21 Cytidylyltransferase


Domain annotation for each model (and alignments):
>> PF01467.21  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0     9e-13   1.2e-08       1     157 []      15     193 ..      15     193 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 9e-13
                  EB----TT-----HHHHHHHHHHSSSS.EEEEEEECTCCCSTTCTSTHHHHHHHHHHHHTC....HTTEEEEECCCSTS.............HHC.TTCEEEEEEECTTTCHHH........HSTTHHHHHHHHEEEECCCHHCCCSECGGCCCHCCSEE.EEEEECCSTTCCH-HHHHHHH CS
   PF01467.21   1 lagGtFDpiHlGHlrlleqakelldedlivvvpsdespkkdtkplfsaeeRvamlelalev....derlevddfelera.............kkegpdvdlyliigadvlesle........kwraiqelleevklvvvsrpgddkletvldreeldkkplgiivikeppsndiSstkirer 157
                  ++gG +Dp++l H+rl+ q+ +  d d++++ p+   p k+ k     ++R am++ a+ +    +  ++v+++++ r+             +      ++ ++ig+d l+              + ++l+ee++++v++rpg+d ++ +l++   ++k l++  + e+++ + Sst +r+r
  MMETSP0890-20130614|30358_1  15 IYGGAYDPVTLDHMRLAAQIIRSDDVDEVWLTPCGPRPDKKLK--TATHDRWAMCHVAVNSffppELPIKVCAVDVHREnamftydllrklsQDYRGTHEFSFVIGSDWLQPGTdirtwesqDGITGHKLVEEFDFIVLRRPGYD-IQGELTQFGPRFKWLNVDSGYELIEGNGSSTAVRNR 193
                  79*************************************9766..899*********998633323349*********9*********99975555556777888888665444566655442334689*************665.556665666666667777777777777899988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.33s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 802.26
//
Query:       MMETSP0890-20130614|30374_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   56.9   0.0    4.2e-15   55.4   0.0    1.9  1  PF00498.21 FHA domain
     0.0094   16.2   0.1        5.2    7.4   0.0    3.3  3  PF02597.15 ThiS family
  ------ inclusion threshold ------
       0.45   10.2   2.6        0.4   10.3   0.1    2.1  2  PF09331.6  Domain of unknown function (DUF1985)


Domain annotation for each model (and alignments):
>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   9.3e-19   4.2e-15       1      68 []      47     114 ..      47     114 .. 0.96

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 9.3e-19
                  EEE-E-.TTSSS---TTTS-TTCEEEEEEETCEEEEEEECST--EEETTEECSTTSEEEE-TTEEEEEC CS
   PF00498.21   1 vtiGRs.sdcdivlddpsiSrkHalikydeggkfyleDlgSknGtfvNgqrigkgepvrLksgdvielG 68 
                  ++iGR+ ++ d+ l++psiSr Ha+++   +g++y+ D +S++Gt +N++  +++++++L++gdv+ +G
  MMETSP0890-20130614|30374_1  47 WVIGRNgDSVDLELQHPSISRIHAILQKSCEGRLYVYD-CSTHGTKLNKTVCPREKYIELRDGDVLAFG 114
                  79****999*****************998889******.69**************************98 PP

>> PF02597.15  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0073        33      44      71 ..      87     113 ..      46     113 .. 0.78
   2 ?   -2.0   0.1      0.98   4.5e+03      26      41 ..     182     200 ..     167     217 .. 0.65
   3 !    7.4   0.0    0.0011       5.2      13      72 ..     255     316 ..     246     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0073
                  TCEEEETTEEEGTCTTTSB--SSSEEEE CS
   PF02597.15  44 rvavavNgeivprlwldtelkdgDevai 71 
                       +N++++pr ++  el+dgD++a+
  MMETSP0890-20130614|30374_1  87 THGTKLNKTVCPR-EKYIELRDGDVLAF 113
                  556679*******.889999******97 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.98
                  HHHHHHCCTTCHHHH...T CS
   PF02597.15  26 elleaLgerypelae...l 41 
                   ++e+L++++ ++++   +
  MMETSP0890-20130614|30374_1 182 KMIEKLEAKHAKATRlrtE 200
                  5677777777555444431 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0011
                  TEEEEESSHCBHHHHHHHHCCTTCHHHH.TSSTCEEEETTEEEGT.CTTTSB--SSSEEEEE CS
   PF02597.15  13 eeelelaegstvaelleaLgerypelae.lerrvavavNgeivpr.lwldtelkdgDevail 72 
                  ++ + ++e+st ++l ++L+ +  e ++  +rr+++ v ++ +p+ +  dt  ++ De++++
  MMETSP0890-20130614|30374_1 255 SQLDHEEEDSTMRDLTQKLKPPRTESERqQRRRMRFTVTNRELPKeRFPDTHAASFDELVVM 316
                  4778899************988876666899*******999999977999999999999987 PP

>> PF09331.6  Domain of unknown function (DUF1985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.29   1.3e+03      46      81 ..     171     204 ..     144     224 .. 0.56
   2 ?   10.3   0.1   8.8e-05       0.4      45      94 ..     240     290 ..     233     321 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.29
    PF09331.6  46 kkkkkgkkekksfwkklfgkkkkvtvedveeklkkk 81 
                  ++ +k++++ +++++kl  + k  + +++++ l++ 
  MMETSP0890-20130614|30374_1 171 ERSTKKNPQDAKMIEKL--EAKHAKATRLRTELERL 204
                  22233333333555555..33444444444555444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 8.8e-05
    PF09331.6  45 kkkkkkgkkekksfwkklfgkkkkvtvedveeklkkk.kkkdseerlrlal 94 
                  k++++++++ k +f+++l +++++ t++d+++klk   ++ ++++r r+ +
  MMETSP0890-20130614|30374_1 240 KERQSSRNSSKRPFVSQLDHEEEDSTMRDLTQKLKPPrTESERQQRRRMRF 290
                  667778888888***********************9855555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1014  (0.0741662); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:01.02
# Mc/sec: 1057.22
//
Query:       MMETSP0890-20130614|30385_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.9   0.4       0.24   11.6   0.0    2.6  3  PF04277.8  Oxaloacetate decarboxylase, gamma chain
      0.027   13.7   0.8        2.3    7.4   0.0    2.1  2  PF03208.14 PRA1 family protein
      0.064   12.4   1.2        1.8    7.6   0.1    2.1  2  PF00335.15 Tetraspanin family
       0.08   12.7   1.0       0.19   11.5   0.7    1.7  1  PF09489.5  Probable cobalt transporter subunit (CbtB)
        2.1    6.0   9.4        2.6    5.6   6.5    1.1  1  PF04147.7  Nop14-like family
        4.5    5.0  10.1        6.2    4.6   7.0    1.1  1  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF04277.8  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.24      13      41 ..      35      67 ..      35      91 .. 0.73
   2 ?    1.0   0.1      0.22     5e+02      14      42 ..     122     150 ..     117     157 .. 0.67
   3 ?   -1.4   0.1       1.3   2.9e+03      39      63 ..     203     223 ..     196     227 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
    PF04277.8 13 giVFvfLilLiliisllskv....ikkaapeek 41
                 gi F+fL++L ++i+ ++++     +++ p++ 
  MMETSP0890-20130614|30385_1 35 GILFTFLAFLTFLITTIHAIirlrRNEFGPKAR 67
                 57899*********9999996655555555444 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.22
    PF04277.8  14 iVFvfLilLiliisllskvikkaapeeka 42 
                   V++ L+lL+l+  +l+ + + ++p++ +
  MMETSP0890-20130614|30385_1 122 SVLTLLFLLVLFGICLAYFGAGTSPHPVV 150
                  58888888888888887775555555554 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.3
    PF04277.8  39 eekaekkaeeaakaesveekkeddp 63 
                  +ek++++aee  + +s++    dd+
  MMETSP0890-20130614|30385_1 203 DEKVKYQAEEDDANNSNR----DDD 223
                  566666666666666654....444 PP

>> PF03208.14  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.001       2.3     117     142 ..      35      60 ..      30      68 .. 0.84
   2 ?    4.8   0.1    0.0063        14     109     132 ..     116     139 ..      92     156 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.001
   PF03208.14 117 vsvllwlllvslllvllHAalrkrnd 142
                  + ++ +l ++++l++++HA++r+r +
  MMETSP0890-20130614|30385_1  35 GILFTFLAFLTFLITTIHAIIRLRRN 60 
                  678899999*************9764 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0063
   PF03208.14 109 lllfltsavsvllwlllvslllvl 132
                   +l+++s+ ++l++l+l++++l  
  MMETSP0890-20130614|30385_1 116 HVLIFASVLTLLFLLVLFGICLAY 139
                  444445555555555555554433 PP

>> PF00335.15  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.01        24      75     106 ..      32      63 ..      23     116 .. 0.57
   2 ?    7.6   0.1    0.0008       1.8      76     131 ..     118     202 ..     109     228 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.01
   PF00335.15  75 lliyailllllflaelalailafvlrsqleas 106
                   l+ +++++l fl +l+ +i a++   + e+ 
  MMETSP0890-20130614|30385_1  32 VLPGILFTFLAFLTFLITTIHAIIRLRRNEFG 63 
                  55667788888888888888887754444433 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0008
   PF00335.15  76 liyailllllflaelalailafvlrsqleaslksgl.............................vqykdksdskrdylkealdl 131
                  li+a +l llfl++l +++la++      + ++++                              +++ d++d+++d+  + +++
  MMETSP0890-20130614|30385_1 118 LIFASVLTLLFLLVLFGICLAYFGAGTSPHPVVHTApeascldcdclrlrprllpnynaahyplvTHDDDDDDEDDDDIDDDIND 202
                  6888899999999999999999888888888887778888888888888888888888888777766666666666665555554 PP

>> PF09489.5  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   8.4e-05      0.19      11      42 ..     121     153 ..     109     154 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.4e-05
    PF09489.5  11 asrllqavaaallGallvfa.vgfsqaealHdA 42 
                  as l+ +++ +l+G++l ++ +g s+ +++H A
  MMETSP0890-20130614|30385_1 121 ASVLTLLFLLVLFGICLAYFgAGTSPHPVVHTA 153
                  56788889999******97648*********87 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.5    0.0012       2.6     343     381 ..     186     223 ..     162     233 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0012
    PF04147.7 343 egvededeeeddddeeeeeedvdedeeeedeedeesdde 381
                  ++ +ded++++ddd + ++e v+ + ee+d ++++ dd+
  MMETSP0890-20130614|30385_1 186 DDDDDEDDDDIDDDIN-DDEKVKYQAEEDDANNSNRDDD 223
                  2222222222233322.2222222222222222222222 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.0    0.0027       6.2     134     176 ..     184     226 ..     168     233 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0027
    PF02724.9 134 esdedsdseddeeeeessasekrksesdedeeddddeededee 176
                  ++d+d+d++dd+ +++ +++ek k + +ed++++++++d+++ 
  MMETSP0890-20130614|30385_1 184 HDDDDDDEDDDDIDDDINDDEKVKYQAEEDDANNSNRDDDRVS 226
                  3455555555555555555555555554555555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       876  (0.0640726); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.42s 00:00:01.08 Elapsed: 00:00:00.76
# Mc/sec: 737.83
//
Query:       MMETSP0890-20130614|30382_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   13.7   0.0      0.029   13.7   0.0    3.4  3  PF04180.9  Low temperature viability protein
      0.054   13.7   0.5       0.21   11.8   0.4    2.1  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PF04180.9  Low temperature viability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-06     0.029       6      34 ..       2      31 ..       1      35 [. 0.87
   2 ?   -2.8  18.4      0.43     3e+03      71     280 ..      38     272 ..      37     304 .. 0.55
   3 ?   -2.7   0.2       0.4   2.7e+03      95     117 ..     338     360 ..     328     368 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.3e-06
    PF04180.9  6 qsfhlVHRsqrDPliaD.edAperVLvpte 34
                 +++ +VHRsq+D      e+A++rVL+p +
  MMETSP0890-20130614|30382_1  2 TTYSVVHRSQQDGAHGEiENASARVLIPQQ 31
                 68**********9875559*********85 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.43
    PF04180.9  71 DDteYDYlQHLkdiGeesgeavlipsksvaqkkkk................kaedqlvlsktardll.kevllsefeldvakltyqaqqdvpDaiagfqpDmdprl........revLealedeayevndeeveed....dgeEieeldieegsddrseagkldef.....edesaegsddeamkeerfveEvaelrnteyseeseairrkedleladkkfkklekknkDveigaadlselees 280
                  DD +YDY QHL++i   +g+  +i+s ++  k+                   + d+  l ++ rd l ++++  +f++        a  +  D    f+ D+  +         ++ ++    e   + dee +e     + eE + ++++++ +d     + d f     +de  + s+ +a  e +  +E +++r  e        +++ed+  + ++    + ++k v   a d +++ +s
  MMETSP0890-20130614|30382_1  38 DDDDYDYEQHLRPI---DGTGTFIDSNGKICKELPreavpidekaqreyeaVTLDPSHLDNEIRDALfDDNISNNFDELNDDFFVEADCNNEDMDTPFDFDVHIANllrladnnNFAIKEDSSEHFFNADEEAFEAalgeY-EETNLKNVKKKRNDTHHIHFDDTFlksmlDDEIGNQSQAKADIESNEIKEYTKSRAQEILA-----QEEEDVDAELDQILRQQTEKKAVRDDAFDCESVLSS 272
                  777*********87...6777788888776664333567777777777777788888888888887769999999988887788888888999988887777666656666655555555555555566666666655422.4444445555555555555555543222233333333335545555555555554444322.....222333333333322222222222233333443333 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.4
    PF04180.9  95 psksvaqkkkkkaedqlvlskta 117
                  +sk+++++ +kk+++ lv ++++
  MMETSP0890-20130614|30382_1 338 KSKKFEDPSQKKIRKALVKEDKR 360
                  46677777777777777766655 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4     3e-05      0.21      19      72 ..     184     240 ..     178     258 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3e-05
                  HHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHH..HHTTEEEETTEEEEEEEESEEE CS
   PF00070.22  19 aklgkkVtvierrdrll.raldeeiakilqkkl..ekngievllntkveeiegsadg 72 
                  +k +++++ i+  d++l  +ld+ei++  q k   e+n i+ +++++++ei  ++++
  MMETSP0890-20130614|30382_1 184 KKKRNDTHHIHFDDTFLkSMLDDEIGNQSQAKAdiESNEIKEYTKSRAQEILAQEEE 240
                  57788999*******************99887666999*************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1056  (0.0772382); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.85
# Mc/sec: 1051.58
//
Query:       MMETSP0890-20130614|30390_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.3   0.2      0.027   13.7   0.1    1.3  1  PF11927.3 Protein of unknown function (DUF3445)


Domain annotation for each model (and alignments):
>> PF11927.3  Protein of unknown function (DUF3445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     2e-06     0.027     168     230 ..      78     140 ..      61     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-06
    PF11927.3 168 rlkpgkpveRvNwsiqtdsklfvsdenkheeeeeeektkeeekdgedlhlRvErQtLrrLpks 230
                  r +++++++R  ws   d++ +++++++ + ++ee+  ++e ++  d +lR E+ +L+ Lp  
  MMETSP0890-20130614|30390_1  78 RSQQDELLWRRAWSAAYDEQKKQDQDEPLQLQNEENFPARELETLVDSCLRREHSSLTTLPSV 140
                  67899********************99999999988888888888999*************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.88
# Mc/sec: 601.81
//
Query:       MMETSP0890-20130614|30391_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   13.8   1.2       0.03   13.4   0.9    1.1  1  PF04045.9  Arp2/3 complex, 34 kD subunit p34-Arc
      0.048   13.2   0.7      0.069   12.6   0.5    1.2  1  PF00682.14 HMGL-like


Domain annotation for each model (and alignments):
>> PF04045.9  Arp2/3 complex, 34 kD subunit p34-Arc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   4.4e-06      0.03      24     109 ..      51     137 ..      35     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.4e-06
    PF04045.9  24 kygklleskpeegydvsllldleelpaeeeekeeliekvallkrnvlaapfekafeklaeleeeaek.aeeeevlvikyRddEtiyi 109
                   y++++++   +g   + ++  ++l +++eek+++ ++  +lk++   + +++af+++++++ ++ + a +++ ++ kyR++ +  i
  MMETSP0890-20130614|30391_1  51 LYSRFVREGEGPGRHKTFMISEDDLDQKDEEKKDVTNTTLTLKTKSKISAIDQAFQESSKKKATSIDaAFKASQIKTKYRAEKSSVI 137
                  5888888889999*********************************************99999988867999999*****9876555 PP

>> PF00682.14  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5     1e-05     0.069      38     114 ..      70     146 ..      66     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1e-05
                  S-TTTSTT---HHHHH--------B--EE-SS----HHHHH----EEE------HHHHHHHHSSTHHHHHHHHHHHH CS
   PF00682.14  38 aseedfesvraiaevlkkakiqallrvvekdieraveaakaagadrvhvfiatselllkkklkkdreevleraeeav 114
                   se+d+++  + ++ + +++++   + +++ i++a++   + +a+ ++ +  +s++ +k++ +k+    ++r +++ 
  MMETSP0890-20130614|30391_1  70 ISEDDLDQKDEEKKDVTNTTLTLKTKSKISAIDQAFQESSKKKATSIDAAFKASQIKTKYRAEKSSVIGVKRKKQIK 146
                  699**********************************999***************8888888888776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1291  (0.0944266); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.89
# Mc/sec: 530.43
//
Query:       MMETSP0890-20130614|30395_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-76  255.0   0.0    9.2e-39  133.0   0.0    2.1  2  PF00857.15 Isochorismatase family


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   6.7e-43   9.2e-39       2     168 ..      25     212 ..      24     218 .. 0.96
   2 !  120.1   0.0   6.3e-39   8.6e-35       2     171 ..     282     471 ..     281     474 .. 0.96

  Alignments for each domain:
  == domain 1    score: 133.0 bits;  conditional E-value: 6.7e-43
   PF00857.15   2 alvviDmqndfl.......egvleseeieavvenikkllkaarkagipviftrdvhe..............leeakgdlekkkasphfepgttgaelvdelaplegdvvvdKtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafat 168
                  al++iDmq df+       +++ ++e  +a ++ ++k+lk ar++g+ v++tr  h+               +   g   k++  + +++g++g+el++el pl+ ++v+dK + + f  tdl+ iL++++i+++++ Gi+tdvCV++t+r+++d+G+e  +++D++aa +p +h++a+k++  ++++
  MMETSP0890-20130614|30395_1  25 ALLLIDMQTDFAgkggyvdSMGYDIELTRAPIKPLQKVLKMAREKGLLVLHTREGHRsslidlpanklwrsESIGAGIGTKGPCGRILTRGEPGWELIPELYPLPHEEVIDKPGKGTFVATDLELILRNQNIQQIIIGGITTDVCVHTTMREGNDRGFEFLLIEDGTAATDPANHAHAIKMIHMQGGV 212
                  8*******************************************************************9988889999*******************************************************************************************************9866665 PP

  == domain 2    score: 120.1 bits;  conditional E-value: 6.3e-39
   PF00857.15   2 alvviDmqndfl.......egvleseeieavvenikkllkaarkagipviftrdvhe.............leeakgdlekkkasphfepgttgaelvdelaplegdvvvdKtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvit 171
                  al+ iD+q+dfl        +++++   + +v++++ ll aarkagi +i+t   h              +++a g  +     + +++g++g+++++ lap  g+ +++K + +af+ t l+++L ++gi ++  +G++tdvCV++tar+a d+G+   +v+DA+a+++p  h+a+++++  ++  v +
  MMETSP0890-20130614|30395_1 282 ALINIDWQRDFLekdgfghALGNDVSILKPAVKQAEILLSAARKAGIFIIHTMEAHApdlsdlppakaqqTNYAIGRSDNPSLGRILIRGEPGNDIIPPLAPMHGELIIHKPGKGAFFRTSLHAQLYAHGISHIAYTGVTTDVCVQSTAREAADRGFINLIVQDATASYNPHFHQASIDMMIAQNHIVAS 471
                  9*****************999999*******************************************99999999999999999*************************************************************************************************966666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.84
# Mc/sec: 1380.76
//
Query:       MMETSP0890-20130614|30411_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-17   61.0   0.3    6.6e-17   60.9   0.2    1.0  1  PF08373.5 RAP domain


Domain annotation for each model (and alignments):
>> PF08373.5  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.2   4.9e-21   6.6e-17       1      58 []       4      65 ..       4      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 4.9e-21
    PF08373.5  1 ieidGpthFyrnsgvll...gktklKrriLtalGwkvisipyfeWnel.qgkeekldYlkei 58
                 ie+d + +++ ++++ +   g  ++K riL+alGwkvi+ipy+eW  l q+ ++ ++Yl+++
  MMETSP0890-20130614|30411_1  4 IEVDTRAQYLFRGKQRHtlhGARQFKSRILSALGWKVIHIPYYEWSALhQNPNDEEAYLRKK 65
                 89*******88885555589****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 254.38
//
Query:       MMETSP0890-20130614|30428_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-35  119.5   0.6    6.1e-35  118.5   0.4    1.5  1  PF00766.14 Electron transfer flavoprotein FAD-binding domain
    2.6e-18   66.1   0.0    4.5e-18   65.4   0.0    1.4  1  PF01012.16 Electron transfer flavoprotein domain
  ------ inclusion threshold ------
      0.061   13.4   2.2         14    5.8   0.0    3.3  3  PF04122.7  Putative cell wall binding repeat 2


Domain annotation for each model (and alignments):
>> PF00766.14  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.4   1.3e-38   6.1e-35       2      86 .]     180     265 ..     179     265 .. 0.97

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 1.3e-38
   PF00766.14   2 vdlseakvvvsgGrglkseenlklleelAkvl.gaevgasraavdagwieaerqvGqtGktvrPklyiavGisGaiqhlaGmkesk 86 
                  +dl++ak +vsgGrg+ks +n+++le+lA++l  ++vgasraavdag +++e q+GqtGk+v+P++y+a+GisGaiqhl Gmk+sk
  MMETSP0890-20130614|30428_1 180 PDLTSAKSIVSGGRGMKSGDNFQMLEQLASKLhSGAVGASRAAVDAGMVPNELQIGQTGKVVAPDIYFAIGISGAIQHLSGMKDSK 265
                  79******************************5589************************************************97 PP

>> PF01012.16  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   9.8e-22   4.5e-18       7     163 ..       3     144 ..       1     145 [. 0.89

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 9.8e-22
                  GCCCCEE-CHHHHHHHHHHHHHHHSSSEEEEEE---GGGGHHHHHHHHH.----EEEEEE-GGCS---CCCHHHHHHHHHHHH.-SEEEEESSTTTT--HHHHHHHHT--EEEEEEEEEE---EEEEEEE--TTSCEEEEESS.....SEEEEE-TTSS- CS
   PF01012.16   7 eqgegklnpvdlealeaArrlaeklggevtalvvGpveeaaealrealaamGadevllledpalagydpeatakalaalikkekpdlvllgatstgkdlaprlAalLgtplitdvteleaeggkltvtRpieggnavvtvklp...drpavltvrpgafe 163
                  e++++ +++ +l+a++aA +l e    e+ ++v G+  +a e      a + ++++  ++ ++ +   p +  ka+a++i+++k+++vl ++++  k+l pr+A+ L+++ i  ++++ + ++   ++Rp+++gna+  ++++    +p vltvr++af+
  MMETSP0890-20130614|30428_1   3 EHDGNLISQGTLAAVTAASKLSE----EICLFVYGE--KAMEV----SA-HKIEKIKKVQVSTTN--FPSP--KAIAQFIEAHKYTHVLGASSTLSKNLCPRIATSLDVSPIMEIVQVIDTQS---FIRPTYAGNALSSIQITsekNKPIVLTVRATAFD 144
                  7889999***************9....9*******5..66666....35.999999999888887..4554..79*****************************************9988765...**************99976668**********98 PP

>> PF04122.7  Putative cell wall binding repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.11   4.8e+02      45      89 ..      44      86 ..      12      89 .. 0.61
   2 ?    4.4   0.0    0.0083        38      38      57 ..     119     138 ..      89     151 .. 0.82
   3 ?    5.8   0.0    0.0031        14      45      82 ..     159     193 ..     156     201 .. 0.66

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.11
    PF04122.7 45 lAakknapilltdkklssetkdylkskkskkvyiiGgensvseev 89
                 + + k+  +  t+   +++ +++++ +  k + ++G ++++s+++
  MMETSP0890-20130614|30428_1 44 IEKIKKVQVSTTNFPSPKAIAQFIEAH--KYTHVLGASSTLSKNL 86
                 333344444444444457777788866..6666678888888775 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0083
    PF04122.7  38 DaLsaaplAakknapilltd 57 
                   aLs   + ++kn pi+lt 
  MMETSP0890-20130614|30428_1 119 NALSSIQITSEKNKPIVLTV 138
                  599999************96 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0031
    PF04122.7  45 lAakknapilltd.kklssetkdylkskkskkvyiiGge 82 
                  +Aa ++api+l++ ++ +s+  d  +     k ++ Gg 
  MMETSP0890-20130614|30428_1 159 IAADSKAPIILSSsSSANSDRPDLTS----AKSIVSGGR 193
                  7999*********4444444444333....355555655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 901.63
//
Query:       MMETSP0890-20130614|30436_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.88
# Mc/sec: 983.05
//
Query:       MMETSP0890-20130614|30450_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-17   61.0   6.3    1.4e-12   46.9   0.9    2.1  2  PF00013.24 KH domain
    6.1e-09   35.2   3.8    1.2e-05   24.7   0.3    2.4  2  PF13014.1  KH domain
     0.0013   18.1   0.1     0.0032   16.9   0.1    1.6  1  PF13083.1  KH domain
     0.0037   16.6   3.7      0.021   14.2   1.4    2.3  2  PF07650.12 KH domain
  ------ inclusion threshold ------
      0.023   14.3   3.5       0.48   10.1   0.7    2.4  2  PF13184.1  NusA-like KH domain


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2     1e-06    0.0027      10      58 .]       5      62 ..       2      62 .. 0.80
   2 !   46.9   0.9   5.3e-16   1.4e-12       2      58 .]      73     131 ..      72     131 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1e-06
                 CCHHH---TTHHHHHHHHHHT-EEEE......--SE.....EEEEEE.SHHHHHHHHHHH CS
   PF00013.24 10 kigriIGkgGsnIkeIeeetgakIdv......pkdr....dtvtisG.dpesvekAkkli 58
                 ++ +i G + +n++ +e+++g++I+v      +  +      + + G   ++v++A   i
  MMETSP0890-20130614|30450_1  5 QVTYIVGLRNENVSTLENKYGVQIKVvhgierR--GesamSRIIVDGfAAKRVNEAVYEI 62
                 567899********************7665431..1345668999999999999998765 PP

  == domain 2    score: 46.9 bits;  conditional E-value: 5.3e-16
                  CEEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--SE....EEEEEESHHHHHHHHHHH CS
   PF00013.24   2 arvkvpnskigriIGkgGsnIkeIeeetgakIdvpkdr...dtvtisGdpesvekAkkli 58 
                  ++v+v ++ ig++IG+ G++IkeI++ +g++ ++++ r   + v+i+G+p s+ +A++li
  MMETSP0890-20130614|30450_1  73 QQVQVKRESIGKVIGRSGERIKEIQQVSGVTSTIDQ-RydpCLVEIKGNPTSILAAIDLI 131
                  5799******************************65.56699**************9987 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   5.3e-05      0.14       1      28 [.       5      32 ..       5      49 .. 0.83
   2 !   24.7   0.3   4.3e-09   1.2e-05       2      23 ..      82     103 ..      81     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.3e-05
    PF13014.1  1 lvgliIGkgGetIkeIreetGakIrfpk 28
                 +v++i G ++e+++ +++++G++I++  
  MMETSP0890-20130614|30450_1  5 QVTYIVGLRNENVSTLENKYGVQIKVVH 32
                 6899*********************965 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 4.3e-09
    PF13014.1   2 vgliIGkgGetIkeIreetGak 23 
                  +g++IG++Ge+IkeI++ +G+ 
  MMETSP0890-20130614|30450_1  82 IGKVIGRSGERIKEIQQVSGVT 103
                  89******************96 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.2e-06    0.0032      32      57 ..      74      99 ..      68     110 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-06
    PF13083.1 32 nlnvdgedlGrlIGkrGktldALqyL 57
                 +++v+ e +G++IG+ G+ ++ +q++
  MMETSP0890-20130614|30450_1 74 QVQVKRESIGKVIGRSGERIKEIQQV 99
                 699******************99997 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.056   1.5e+02      34      61 ..       4      31 ..       1      35 [. 0.83
   2 !   14.2   1.4   7.7e-06     0.021      27      53 ..      73      99 ..      46     104 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.056
                 SCCCCC------HHHHHHHHHHHHCHHC CS
   PF07650.12 34 sqpgivIGkgGsnikklgkelrkriekl 61
                  q   ++G + +n+ +l+++ + +i+++
  MMETSP0890-20130614|30450_1  4 PQVTYIVGLRNENVSTLENKYGVQIKVV 31
                 577889************9999998765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.7e-06
                 EEEEEEESCCCCC------HHHHHHHH CS
   PF07650.12 27 viiviresqpgivIGkgGsnikklgke 53
                  ++ ++ + +g vIG+ G++ik++++ 
  MMETSP0890-20130614|30450_1 73 QQVQVKRESIGKVIGRSGERIKEIQQV 99
                 457789999***************985 PP

>> PF13184.1  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.013        34      19      46 ..       6      32 ..       3      36 .. 0.90
   2 ?   10.1   0.7   0.00018      0.48       9      35 ..      77      98 ..      74      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.013
    PF13184.1 19 vgaivgkkgsrikaisseLngekidvve 46
                 v  ivg + +++ +++++  g +i+vv+
  MMETSP0890-20130614|30450_1  6 VTYIVGLRNENVSTLENKY-GVQIKVVH 32
                 5679***************.******96 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00018
    PF13184.1  9 VkshnpnvDpvgaivgkkgsrikaiss 35
                 Vk +      +g+ +g++g+rik+i++
  MMETSP0890-20130614|30450_1 77 VKRES-----IGKVIGRSGERIKEIQQ 98
                 66666.....***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.77
# Mc/sec: 507.28
//
Query:       MMETSP0890-20130614|30440_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0064   15.9   4.6       0.63    9.6   0.1    2.8  2  PF13414.1  TPR repeat
  ------ inclusion threshold ------
      0.051   13.0   0.8       0.15   11.6   0.6    1.7  1  PF00515.23 Tetratricopeptide repeat
      0.074   12.8   0.1      0.074   12.8   0.1    2.8  3  PF13424.1  Tetratricopeptide repeat
        0.6   10.0   7.4       0.43   10.5   0.5    3.2  3  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.5    0.0011       3.7       5      49 ..      68     116 ..      64     124 .. 0.80
   2 !    9.6   0.1   0.00018      0.63       6      37 ..     193     224 ..     188     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0011
    PF13414.1   5 alkelGnalfkegdydeAieayekAleld..pnnae..lyynlAlaylk 49 
                  +lk+++ +l ++gd  +A++++++A el+  p   +  ++++lA + ++
  MMETSP0890-20130614|30440_1  68 ELKRQALQLKRNGDAVGALAKLREAKELEaaPAQHKnaAMNALAEVAIN 116
                  799**********************998633443335788889988765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00018
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnna 37 
                  lk ++ a+ ++gd+++A e++++A +++  +a
  MMETSP0890-20130614|30440_1 193 LKKKALAFKRAGDLEKAMECLRQAKAIEAGDA 224
                  78999999****************88876555 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   4.4e-05      0.15       6      30 ..     195     219 ..     193     222 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.4e-05
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekALel 30 
                   +++a+ + g++++A e+ ++A  +
  MMETSP0890-20130614|30440_1 195 KKALAFKRAGDLEKAMECLRQAKAI 219
                  689******************9765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.4     0.058     2e+02      12      55 ..      73     113 ..      69     120 .. 0.78
   2 ?   12.8   0.1   2.2e-05     0.074      11      46 ..     196     229 ..     190     234 .. 0.84
   3 ?   -3.3   0.1       2.4   8.2e+03      56      75 ..     270     289 ..     267     291 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.058
    PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanl 55 
                  al l+r gd   Al+ +++a el + ++  h + a a+n la++
  MMETSP0890-20130614|30440_1  73 ALQLKRNGDAVGALAKLREAKEL-EAAPAQHKN-A-AMNALAEV 113
                  7778999***************9.357777776.3.57776665 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.2e-05
    PF13424.1  11 lalvlrrlgdydeAlelyekalellrelgddhpdta 46 
                   al+++r gd+++A e++++a ++   +gd+ ++++
  MMETSP0890-20130614|30440_1 196 KALAFKRAGDLEKAMECLRQAKAIE--AGDAALERV 229
                  68999*******************5..788777665 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 2.4
    PF13424.1  56 ylalgdydeAleylekAlei 75 
                   l +g+ ++A+e   +A e+
  MMETSP0890-20130614|30440_1 270 RLSKGESEAAKEVTARAREL 289
                  56788999999998888776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.068   2.3e+02       4      30 ..      69      95 ..      66      97 .. 0.88
   2 ?   10.5   0.5   0.00013      0.43       6      30 ..     195     219 ..     192     223 .. 0.87
   3 ?   -2.7   0.0       2.1   7.2e+03      14      30 ..     273     289 ..     269     292 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.068
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                 l +++l + ++gd   Al+ +++A el
  MMETSP0890-20130614|30440_1 69 LKRQALQLKRNGDAVGALAKLREAKEL 95
                 668899999***************988 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00013
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAlel 30 
                    +la  ++gd+e+A e++++A ++
  MMETSP0890-20130614|30440_1 195 KKALAFKRAGDLEKAMECLRQAKAI 219
                  578999****************776 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 2.1
                  TT-HHHHHHHHHHHHHH CS
   PF07719.12  14 lgdyeeAleafekAlel 30 
                  +g+ e A+e   +A el
  MMETSP0890-20130614|30440_1 273 KGESEAAKEVTARAREL 289
                  68889999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:01.39
# Mc/sec: 1139.56
//
Query:       MMETSP0890-20130614|30461_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.6   0.2       0.11   12.4   0.0    1.6  2  PF02393.11 US22 like
       0.39   10.8   8.8      0.089   12.9   1.8    2.5  2  PF13646.1  HEAT repeats


Domain annotation for each model (and alignments):
>> PF02393.11  US22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05      0.11      57     119 ..      10      69 ..       2      74 .. 0.82
   2 ?   -2.0   0.0      0.45   3.1e+03      42      42 ..     157     157 ..     119     181 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
   PF02393.11  57 lrlccgllvlGavlparwlgcvpramlvvlldelgaVygydpldghvyrlAdsLseflraGll 119
                  l  ++ l +l a+l       ++ ++ vvll++lg+ y+ + +d+ +  + +++ +f+r+G+ 
  MMETSP0890-20130614|30461_1  10 LESQEDLSALNACLQVAD---PNACSRVVLLATLGTNYLSEEEDENLLNIPATVFDFFRRGCP 69 
                  556666666666666544...378999**********************************85 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.45
   PF02393.11  42 a 42 
                  a
  MMETSP0890-20130614|30461_1 157 A 157
                  2 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.065   4.5e+02      53      76 ..       5      28 ..       1      54 [. 0.54
   2 ?   12.9   1.8   1.3e-05     0.089       2      47 ..     103     147 ..     102     187 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.065
    PF13646.1 53 eaLgklgdpealpaLlkllddded 76
                 ++ + l ++e l+aL  +l+  ++
  MMETSP0890-20130614|30461_1  5 QVAALLESQEDLSALNACLQVADP 28
                 333333333444444333333333 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.3e-05
    PF13646.1   2 eaLlaaLekdpdpevraaaieaLgqlgseealpaLlelLkdsdpev 47 
                  ++++ a+ +++d ++r  ai aL q+ se+a + L  +L ++  + 
  MMETSP0890-20130614|30461_1 103 PFFVMAA-GEADVYTRKLAIAALRQCQSESATASLALALASDVCAD 147
                  6778888.99*********************999998885443222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.75
# Mc/sec: 616.66
//
Query:       MMETSP0890-20130614|30465_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-74  248.5   0.0    2.8e-74  248.3   0.0    1.0  1  PF11539.3 Protein of unknown function (DUF3228)


Domain annotation for each model (and alignments):
>> PF11539.3  Protein of unknown function (DUF3228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.0   2.1e-78   2.8e-74       6     196 ..       2     194 ..       1     195 [] 0.95

  Alignments for each domain:
  == domain 1    score: 248.3 bits;  conditional E-value: 2.1e-78
    PF11539.3   6 defalkqfdkevkstsyiplskeefvkklnelikeeklklvdGYApFCkhlvlenfteakletleitkenekllksgYeaRneeElpvLvrwlskedveeelkakyldviLYsreqlekenkavnek....ekkekeadygivsikaqnedeevPmePitmlRnalGveeGGsGvaldrekYlesvefWskhavi 196
                  d+f+++qf+k + +t yi+++ ++f +++++++   ++ l dGYApFCkh++lenf++ + ++l i++en++ll++gY+aR+e ElpvL+rw+++e + ++  ak+ld+iLYsreq+ ken+a+++     ++ ++   +givsikaq++d+e+Pm+Pitm+RnalG+e+GGsGv+ld ekY++sv+fW+kha+i
  MMETSP0890-20130614|30465_1   2 DPFCFRQFEKGSGKTPYIEMNVDKFEEEIHARYD--ESLLKDGYAPFCKHIFLENFANCTSNVLAISTENSHLLRTGYVARTEYELPVLSRWFPAECIGKQPPAKFLDIILYSREQIIKENAATGQSftseKDLNSLPPWGIVSIKAQDVDYELPMAPITMMRNALGKEQGGSGVPLDAEKYRASVDFWAKHANI 194
                  79****************************9985..6679***********************************************************9999********************9988765445556679******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 623.05
//
Query:       MMETSP0890-20130614|30474_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-21   75.8   0.0    3.6e-21   75.4   0.0    1.2  1  PF13489.1  Methyltransferase domain
    3.7e-15   56.0   0.0    5.6e-15   55.4   0.0    1.3  1  PF08241.7  Methyltransferase domain
    3.4e-13   49.3   0.0    4.7e-13   48.8   0.0    1.2  1  PF13847.1  Methyltransferase domain
    5.9e-13   49.0   0.0      9e-13   48.4   0.0    1.3  1  PF08242.7  Methyltransferase domain
    1.1e-12   48.3   0.0    1.5e-12   47.9   0.0    1.2  1  PF12847.2  Methyltransferase domain
      2e-09   36.5   0.0    2.8e-09   35.9   0.0    1.1  1  PF08003.6  Protein of unknown function (DUF1698)
    9.8e-09   34.7   0.0    1.8e-08   33.8   0.0    1.4  1  PF05175.9  Methyltransferase small domain
    1.8e-08   33.7   0.0    2.6e-08   33.2   0.0    1.1  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    1.1e-06   27.8   0.0    1.4e-06   27.5   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
    1.8e-05   23.8   0.0    2.3e-05   23.5   0.0    1.2  1  PF03848.9  Tellurite resistance protein TehB
    4.1e-05   23.7   0.0    6.8e-05   23.0   0.0    1.4  1  PF13649.1  Methyltransferase domain
     0.0008   19.3   0.0     0.0015   18.3   0.0    1.5  1  PF13659.1  Methyltransferase domain
     0.0013   18.2   0.0     0.0022   17.5   0.0    1.3  1  PF13679.1  Methyltransferase domain
     0.0027   16.7   0.0     0.0035   16.3   0.0    1.1  1  PF01209.13 ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
       0.01   14.7   0.0       0.74    8.7   0.0    2.1  2  PF02390.12 Putative methyltransferase
       0.04   13.2   0.0      0.061   12.5   0.0    1.2  1  PF05401.6  Nodulation protein S (NodS)
        0.1   11.4   0.0       0.12   11.3   0.0    1.1  1  PF00398.15 Ribosomal RNA adenine dimethylase
       0.13   11.2   0.0       0.17   10.8   0.0    1.2  1  PF02527.10 rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   4.8e-24   3.6e-21      20     160 ..      67     220 ..      56     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 4.8e-24
    PF13489.1  20 lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.akqaqksqfdeed......aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas....lasdeafakwdylvprgthi..sffsaeslkelleeaGfeiv 160
                  + + +++ DiGcG+G l+  l ++g++vt+vD s  ++++ ++ a+ks+++ e+      ++ ++  +d+i+a ev+ehv+dp+++++++ + lk gG l+lst +++       + a++++  + prgth   +f+ +++l+ +l ++G+ ++
  MMETSP0890-20130614|30474_1  67 DLKEKKIADIGCGGGLLSIDLVRAGAKVTAVDASLTSVEAtRQYAEKSNNYLESlihggpEDIDSSAYDVICAMEVIEHVRDPAHFIAELSRPLKSGGALFLSTLDKNflsyALGIIAAEHIFKILPRGTHNwsKFIPPKDLAIFLGQNGLILH 220
                  45678999****************************999977777777776666666665555777**************************************877766554477788888889******999****************9886 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   7.4e-18   5.6e-15       2      94 ..      75     167 ..      74     168 .. 0.93

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 7.4e-18
    PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle...lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllv 94 
                  d+GcG+gll+  l ++ +a+vt+vD s ++++  ++ +++++     l+++  e++  +++ +Dv++++ev+eh+ dp+++++e+ R Lk gG l+
  MMETSP0890-20130614|30474_1  75 DIGCGGGLLSIDLVRA-GAKVTAVDASLTSVEATRQYAEKSNNYlesLIHGGPEDI--DSSAYDVICAMEVIEHVRDPAHFIAELSRPLKSGGALF 167
                  9***************.***************999988888766889999999988..578********************************998 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   6.2e-16   4.7e-13       3     112 ..      69     172 ..      67     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 6.2e-16
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke..raqklgfenveFiqgdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                  +++k+ D+GCG G l++ l    + gakv+ +D s +++e  ++  + +++ +e  + i+g  e++++   + +D++++ ev++++ dp+ ++ e++r lk+gg+l++++ +
  MMETSP0890-20130614|30474_1  69 KEKKIADIGCGGGLLSIDLV---RAGAKVTAVDASLTSVEATRQyaEKSNNYLE--SLIHGGPEDIDS---SAYDVICAMEVIEHVRDPAHFIAELSRPLKSGGALFLSTLD 172
                  6789**************99...459******************4433445555..999999999994...57**********************************99988 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.2e-15     9e-13       2      99 .]      75     166 ..      74     166 .. 0.93

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 1.2e-15
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                  +iGcG G l+  l ++  ++++t+vD s  ++e++++   k +n+  + ++   +d++++    ++Dv+ a +v++h++d+  +++++ + Lk gG l
  MMETSP0890-20130614|30474_1  75 DIGCGGGLLSIDLVRA--GAKVTAVDASLTSVEATRQYAEKSNNYLESLIHGGPEDIDSS----AYDVICAMEVIEHVRDPAHFIAELSRPLKSGGAL 166
                  9***************..**************9999999999999999999999997655....9*******************************75 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0     2e-15   1.5e-12       1     111 [.      69     170 ..      69     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2e-15
    PF12847.2   1 kgkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkgltldallal.deprrvlealpkllkpggrlvies 111
                  k+k+i D+GcG G+ls+ l r   gakv++vD+s  s+e  r+ a ++++    +l++g +   ++++   +D++ + +     ++++ ++p  ++++l + lk+gg l++++
  MMETSP0890-20130614|30474_1  69 KEKKIADIGCGGGLLSIDLVR--AGAKVTAVDASLTSVEATRQYA-EKSNNYLESLIHGGP---EDIDSSaYDVICAME-----VIEHvRDPAHFIAELSRPLKSGGALFLST 170
                  6899*****************..**********************.433434444999999...5555555******99.....99999********************9986 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   3.7e-12   2.8e-09     113     220 ..      67     171 ..      60     174 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 3.7e-12
    PF08003.6 113 dlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedq..rahllplgieqlpeleafdtvfsmGvlyhrrsPldhllqlkdqlvkgGelvletl 220
                  dlk+++i+d+Gcg G     +v +gak+   +d s   l+  ea r++  + +   + l+  g e+++  +a+d++ +m v+ h r P   + +l   l++gG l l tl
  MMETSP0890-20130614|30474_1  67 DLKEKKIADIGCGGGLLSIDLVRAGAKV-TAVDAS---LTSVEATRQYAEKSNnyLESLIHGGPEDID-SSAYDVICAMEVIEHVRDPAHFIAELSRPLKSGGALFLSTL 171
                  8************************985.567766...7899****9987654115667777888886.589***********************************997 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.4e-11   1.8e-08      31     137 ..      69     167 ..      61     180 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2.4e-11
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EEE--------HHHHHHHHHHH---GGGB-----EE CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeveekkfdlivsNPPfhagkatelevaerliaeAkkhLkegGeLl 137
                  +++k++D+GcG G+l++ l +++ +  vt+vD++  +ve++++ +e+ +   +e l + + e++++  +d+i     + + ++       ++iae  + Lk+gG L+
  MMETSP0890-20130614|30474_1  69 KEKKIADIGCGGGLLSIDLVRAGAK--VTAVDASLTSVEATRQYAEKSNNY-LESLIHGGPEDIDSSAYDVICAMEVIEHVRD-----PAHFIAELSRPLKSGGALF 167
                  6789*****************9999..******************999977.9999999999999999999976443333333.....4567777777777777765 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.4e-11   2.6e-08     156     258 ..      64     169 ..      58     175 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.4e-11
    PF06325.8 156 eklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNael.Nkveakleva.llkelpkekadvivaNILaevli...eLaedikelvkeggllilS 258
                  +++  +++++ D+G+G G+L+i  ++ ga kv+avD    +v+++++ ae+ N+  ++l ++  ++++ ++ +dvi a  + e +    +++ ++++ +k+gg l lS
  MMETSP0890-20130614|30474_1  64 DRVDLKEKKIADIGCGGGLLSIDLVRAGA-KVTAVDASLTSVEATRQYAEKsNNYLESL-IHgGPEDIDSSAYDVICAMEVIEHVRdpaHFIAELSRPLKSGGALFLS 169
                  67788999******************998.59**************9986537777766.4537899999*******9766666642336888888888889988887 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.8e-09   1.4e-06      54     169 ..      62     173 ..      49     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.8e-09
                  HHHTT------EEEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT---.--SEEEE---GGGT--TCHHHHHHHHHHCS-----EEEEEEE- CS
   PF02353.15  54 ileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevklldyedlde.kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtits 169
                  i ++++lk+ +++ diGcG G l +  v+  ++kv ++  S    + ++q  ++++ +  +++   + ed+d   +d + +++++ehv     ++f+++l++ lk++G l l t+ +
  MMETSP0890-20130614|30474_1  62 ISDRVDLKE-KKIADIGCGGGLLSIDLVRA-GAKVTAVDASLTSVEATRQYAEKSN-NYLESLIHGGPEDIDSsAYDVICAMEVIEHVRDP--AHFIAELSRPLKSGGALFLSTLDK 173
                  667777776.7899**************99.******************9998888.55666777899****989************9765..67***************9998765 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     3e-08   2.3e-05      29     127 ..      68     164 ..      52     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3e-08
                  S----EEE-------HHHHHHH----EEEEES-HHHHHHHHHHHHHTT-TEEEEE--GGG------BSEEEEES-GGGS-GGG----HHHHHHTB---- CS
    PF03848.9  29 vkpgkaldlGcGqGrnslflsllgydvtavdkneasiailqeiaekenldlkaalydinaasldeeydfilstvvlmflqaeripeiianmqektkvGG 127
                  +k+ k+ d+GcG G  s+ l  +g  vtavd + +s++  ++ aek n  l++ ++   +   +  yd i +  v+  ++    ++ ia++ +  k+GG
  MMETSP0890-20130614|30474_1  68 LKEKKIADIGCGGGLLSIDLVRAGAKVTAVDASLTSVEATRQYAEKSNNYLESLIHGGPEDIDSSAYDVICAMEVIEHVRDP--AHFIAELSRPLKSGG 164
                  68899*****************************************998888777666665556789998888777665543..466666666666666 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     9e-08   6.8e-05       1     101 []      73     164 ..      73     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9e-08
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl.kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  i d+GCG+G     l+ra      ++v++vD s   +e++++++++++    + +++ +++++ ++  +d v+ca+ ++eh+ +++   +++e++r lk gG
  MMETSP0890-20130614|30474_1  73 IADIGCGGGLLSIDLVRAG-----AKVTAVDASLTSVEATRQYAEKSNNyLESLIHGGPEDIDSSA--YD-VICAMEVIEHVRDPA--HFIAELSRPLKSGG 164
                  68**************995.....9*******************9977634557999999998665..66.556688899977665..45667777666665 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     2e-06    0.0015       2     114 ..      71     169 ..      70     172 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2e-06
    PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvli 114
                   ++ d+gcG G + + + +++ a++++v+ +  +++++++ +++ +     +  ++ +   +e ++++++d++++    +++++       + ++f+++++r lk+gG+l l 
  MMETSP0890-20130614|30474_1  71 KKIADIGCGGGLLSIDLVRAG-AKVTAVDASLTSVEATRQYAEKSN-----NYLESLIHGGPEDIDSSAYDVICA-MEVIEHVR-------DPAHFIAELSRPLKSGGALFLS 169
                  5899*****************.*****************9998865.....356666666677788999**9999.44443433.......3457999999999999998876 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-06    0.0022      25      81 ..      69     119 ..      58     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.8e-06
    PF13679.1  25 gsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfn 81 
                  ++++++D+G+G g L+  l         + kv+++d++   ve++++ aek +++++
  MMETSP0890-20130614|30474_1  69 KEKKIADIGCGGGLLSIDLVR------AGAKVTAVDASLTSVEATRQYAEKSNNYLE 119
                  6789***************99......699999999999999999999999886664 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.6e-06    0.0035      45     151 ..      67     168 ..      57     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.6e-06
   PF01209.13  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                  +++ +k+ D+ +G g l+++l   v++  kv+ +D + + ++ +++ ++++  +   ++++  e++  +  ++Dv+     +  v D  + + e+ r lk GG+l+ 
  MMETSP0890-20130614|30474_1  67 DLKEKKIADIGCGGGLLSIDL---VRAGAKVTAVDASLTSVEATRQYAEKSNNYLESLIHGGPEDI--DSSAYDVICAMEVIEHVRDPAHFIAELSRPLKSGGALFL 168
                  567789***********9987...567789***************999999998888899888876..5689*******************************9975 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.026        20      20      59 ..      70     107 ..      55     131 .. 0.75
   2 ?    8.7   0.0   0.00098      0.74     116     160 ..     151     194 ..     149     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.026
                  B-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHH CS
   PF02390.12  20 qklvleIGfGsGdflvalAkknPdklflGiEirqkvvekv 59 
                  +k +++IG+G G + ++l  + ++++  +++ + ++ve+ 
  MMETSP0890-20130614|30474_1  70 EKKIADIGCGGGLLSIDLVRAGAKVT--AVDASLTSVEAT 107
                  55789*******99999877766554..556666666554 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00098
                  THHHHHHHHB-----EEEEES-HHHHHHHHHHHHH.STTEEE-.- CS
   PF02390.12 116 ellkelarvLkkgGvlelaTDveeyleemlelleenkplleriee 160
                  ++++el r Lk gG l l T ++++l ++l  ++++   ++++  
  MMETSP0890-20130614|30474_1 151 HFIAELSRPLKSGGALFLSTLDKNFLSYALGIIAAE-HIFKILPR 194
                  7999*****************************995.89998864 PP

>> PF05401.6  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     8e-05     0.061      48     155 ..      74     178 ..      64     196 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8e-05
                  -EE------HHHHHGGGBSSEEEEES-TTT---HHHHTTT-SSE..EEEES-TTT---SS-BS-EEE-S-GGGSSSHHHHHHHHHHHHHTB-----EEE-EE-HHHHHH- CS
    PF05401.6  48 levGcaaGafteklapyckrltvidvvpeaierarervkksshi..sWvvsdvqqfsteekfdlivvaevlyyledveelraavenlvkllapdgqlvfGsardavcrrW 155
                   ++Gc  G ++  l     ++t +d    ++e +r+  +ks +   s +    + +++   +d+i   ev+ +++d +++   + +l + l+++g l f s+ d++  ++
  MMETSP0890-20130614|30474_1  74 ADIGCGGGLLSIDLVRAGAKVTAVDASLTSVEATRQYAEKSNNYleSLIHGGPEDIDS-SAYDVICAMEVIEHVRDPAHF---IAELSRPLKSGGAL-FLSTLDKNFLSY 178
                  479*********************************9999765411233333444444.67**********999998876...66777888888776.556666665555 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.12      22      73 ..      62     112 ..      53     177 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
   PF00398.15  22 IldklnlqekdtvlEigpGkGalTeeLakrakqvvalEidsklvkrlqkkla 73 
                  I d+++l +++++ +ig G G l+  L++   +v+a++     v+ +++  +
  MMETSP0890-20130614|30474_1  62 ISDRVDL-KEKKIADIGCGGGLLSIDLVRAGAKVTAVDASLTSVEATRQYAE 112
                  5566665.5679*************************998888888887555 PP

>> PF02527.10  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00023      0.17      47     121 ..      68     139 ..      52     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00023
                  GGC..EEE--------HHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-TTTTTTTT-BSEEEE CS
   PF02527.10  47 ekrskviDvGsGaGlPGipLaiarpelkltLleskekkiaFLeelkkelklenveivearaeekqeeekydvits 121
                   k++k++D+G G+Gl +  + ++r+  k+t ++++   ++  ++  ++ ++     ++   e+    + ydvi++
  MMETSP0890-20130614|30474_1  68 LKEKKIADIGCGGGLLS--IDLVRAGAKVTAVDASLTSVEATRQYAEKSNNYLESLIHGGPED-IDSSAYDVICA 139
                  44557**********55..57799999999999999999988888888888866777777777.66777888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.71
# Mc/sec: 840.41
//
Query:       MMETSP0890-20130614|30479_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-07   28.9   0.0    1.1e-06   28.4   0.0    1.2  1  PF04536.9 Repair protein


Domain annotation for each model (and alignments):
>> PF04536.9  Repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   7.7e-11   1.1e-06       1      65 [.      53     108 ..      53     111 .. 0.95

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7.7e-11
                  ---HHHHHHH---HHHHHHTT----EEEEESB-----HHHHHHHHHHH------S-----EEEEE CS
    PF04536.9   1 llseaerarleaavaelekktsgeivvvtvdslgdesiedyaldlfrewgigkteddtgvLlvvs 65 
                  +l++ +++rle+ + ele k++++++v++++++  e+++ + +d++         dd++++lv++
  MMETSP0890-20130614|30479_1  53 FLTSGQIKRLEKLISELEVKSGWKVRVLCQSYP--ETPGLAIKDYWGV-------DDNTIVLVAD 108
                  6999*****************************..*************.......9******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|30491_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 212.58
//
Query:       MMETSP0890-20130614|30494_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 252.71
//
Query:       MMETSP0890-20130614|30487_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-05   20.9   0.1     0.0012   17.3   0.0    2.1  2  PF04129.7  Vps52 / Sac2 family
  ------ inclusion threshold ------
      0.011   14.6   0.1      0.057   12.2   0.1    2.2  2  PF12699.2  phiKZ-like phage internal head proteins
      0.066   11.8   0.1       0.19   10.3   0.0    1.7  2  PF03081.10 Exo70 exocyst complex subunit
      0.077   12.7   0.1       0.11   12.2   0.1    1.2  1  PF13468.1  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> PF04129.7  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.4e-07    0.0012     442     490 ..      26      74 ..      12      85 .. 0.87
   2 ?    1.4   0.0     0.023        77      15      45 ..     187     217 ..     172     220 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.4e-07
    PF04129.7 442 verllerlereveslllrlaklfkkkkeqevFLinNYdlilavLkeaea 490
                  v  ++ +l++e++ ++ r a+ f+++ e +vFL+nN+d il++L+e+ +
  MMETSP0890-20130614|30487_1  26 VRSSMAQLRSEIVAVMDRAARSFDHPSEATVFLVNNFDNILTILRERRS 74 
                  788999***************************************9876 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.023
    PF04129.7  15 nlaslhnqiaaidsvleqledlLeeFqeels 45 
                    a+  n ++ +++vl ql  + ++Fqe ++
  MMETSP0890-20130614|30487_1 187 SFANFVNGMEILKQVLTQLLLYYTRFQEIIK 217
                  5567788888999999999999999998765 PP

>> PF12699.2  phiKZ-like phage internal head proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.14   4.8e+02      83     110 ..      25      53 ..      24      63 .. 0.79
   2 ?   12.2   0.1   1.7e-05     0.057      50      98 ..     157     205 ..     117     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.14
    PF12699.2  83 ritsgierlskridkLeerlksl.kkede 110
                  +++s++  l+  i  +++r++   ++++e
  MMETSP0890-20130614|30487_1  25 HVRSSMAQLRSEIVAVMDRAARSfDHPSE 53 
                  7899**************99876455554 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.7e-05
    PF12699.2  50 vsledlkeklkeagkkakelikkiietlkdaavritsgierlskridkL 98 
                  ++l+ +++ +++++++ k+ i+k+++++ +++ ++ +g+e l++ +++L
  MMETSP0890-20130614|30487_1 157 IDLRHIQQHVRDFAASWKQAIEKVYRDVLASFANFVNGMEILKQVLTQL 205
                  47999***********************************999888887 PP

>> PF03081.10  Exo70 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.7e-05      0.19     186     243 ..      17      77 ..       5     100 .. 0.75
   2 ?   -1.3   0.0      0.18   6.3e+02     257     273 ..     162     177 ..     134     218 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.7e-05
   PF03081.10 186 s..tskesllsslisdiieaLlsnLeeksksykdpalqgiFllNNlhyilqkvers.elks 243
                  +  +++ + + s ++++ +++ +  ++ ++s ++p+ + +Fl NN   il+++++   l+s
  MMETSP0890-20130614|30487_1  17 QnyDIHGNHVRSSMAQLRSEIVAVMDRAARSFDHPSEATVFLVNNFDNILTILRERrSLAS 77 
                  1336677777777777778888888999************************988655554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.18
   PF03081.10 257 veqyiksYldasWspvl 273
                  ++q++  +  + W++++
  MMETSP0890-20130614|30487_1 162 IQQHVRDFAAS-WKQAI 177
                  33333333333.33332 PP

>> PF13468.1  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.3e-05      0.11      50     165 ..      36     171 ..      36     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
    PF13468.1  50 Ellavdpeae....apergrlfgld.......rleqgeglsdlalrtddidalaarlaaagvd.aarrv.rpdggdlrwkllviadgalpaegalPfliqwgeshpa.........lldhpngalglaalviaapdp.e 165
                  E++av ++a+    +p+++++f           l+++  l+ l+++t+ i + + +l++a ++ + + +  +d++ ++++  +++ + l  + ++P+li   ++ +a          ++ +n +  l++++  ++d  +
  MMETSP0890-20130614|30487_1  36 EIVAVMDRAArsfdHPSEATVFLVNnfdniltILRERRSLASLVVKTSGIPEKQPALEQAALAhFDKDIaFFDRRLAQFRDNFVEIE-L--DTCFPKLIAFVKRAEAttdgsgdssSTNNSNPDIDLRHIQQHVRDFaA 171
                  8889755555588877788888777888888878899*********************9999985555559999*********9987.5..589****99999877667787776666688889999999988888733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.82
# Mc/sec: 721.83
//
Query:       MMETSP0890-20130614|30496_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.0   0.0    1.8e-14   53.3   0.0    1.3  1  PF00891.13 O-methyltransferase
    5.8e-06   25.9   0.0    8.9e-06   25.3   0.0    1.3  1  PF13489.1  Methyltransferase domain
     0.0024   18.1   0.0     0.0046   17.2   0.0    1.5  1  PF08242.7  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   15.5   0.1      0.029   14.8   0.1    1.4  1  PF12847.2  Methyltransferase domain
      0.027   13.9   0.0      0.058   12.8   0.0    1.5  1  PF13847.1  Methyltransferase domain
        0.1   11.4   0.0       0.15   10.9   0.0    1.2  1  PF09243.5  Mitochondrial small ribosomal subunit Rsm22


Domain annotation for each model (and alignments):
>> PF00891.13  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   8.1e-18   1.8e-14      80     230 ..     115     294 ..      37     306 .. 0.71

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 8.1e-18
                  CCCCTTTTT...HHHHHCS-GTT-SEEEE--------HHHHHHHSTT-EEEE.E-----HHHHHH..........TTTEEEE---TTS--SS....BSEEEEES-GGGS-HHHHHHHHHHHCC.TB---..--EEEEEE-B-GGG--CHHHH...............HHHHHHHHHH----- CS
   PF00891.13  80 maedsrlva..kkilekakdfeglsslvDVGGGtGalaaaivsayPhikgiv.fDlPhvvadake..........adrvefvgGDmfesvPe....aDailLkwvLhdWsdedcvkiLkrcre.AlppgkkGkvivveavlpeeeddseesetk.............llldlnmlvlneGke 230
                  ++++s l a   ++ ++++ f g ++++D+GGG+G l++ai ++ P +++++ +D ++  a+ +           + r+   + ++ + +P     +D+++L +vL   +d++++ +L+ +r+ Al+pg  +++i+++++l++++++s+  ++              +l d+++l++ ++  
  MMETSP0890-20130614|30496_1 115 IQASSYLNApsIASFLADFRFRGTETVCDIGGGRGDLLRAIGEHWPELNLMLlIDQADGSAGHSLavdhlaarigKARFAALTSSLLSLLPValnaCDIFILHRVLSTLPDNQAISLLTHIRQvALKPG--ARLIILDTLLEDQKASSSFASKGnkaalaafsryptQLQDIDTLATAPAGA 294
                  33333333333356889999*****************************88626999998888778999****998899************866668************************9879**99..**********99998887654334677777777777777777777777433 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.9e-09   8.9e-06      13     127 ..     127     262 ..     109     314 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.9e-09
    PF13489.1  13 lerllar.lkpggrvLDiGcGtGillellaengf..d.vtgvDpspaaigk.............akqaqksqfdeedaaepag.................kfdlivarevlehvpd..peellrqiael.lkpgGylllstpnas.lasdeaf 127
                   ++l+++ ++   +v+DiG G G+ll+ + e ++  + +  +D  + + g              a                 +                   d+ ++ +vl ++pd    +ll++i++  lkpg  l++ + + + +++ ++f
  MMETSP0890-20130614|30496_1 127 ASFLADFrFRGTETVCDIGGGRGDLLRAIGEHWPelNlMLLIDQADGSAGHslavdhlaarigkA-----------------RfaaltssllsllpvalnACDIFILHRVLSTLPDnqAISLLTHIRQVaLKPGARLIILDTLLEdQKASSSF 262
                  46677762455569***************998883333447777433333244444443222222.................033455556666666666***************77899********77****9988888655424444444 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06    0.0046       2      99 .]     143     246 ..     142     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2e-06
    PF08242.7   2 eiGcGtGsllralleklpdieyt.gvDispsai..edakeklakrennnnnnvnlealdlldldgg..ssfDvvvasnvlhhl..kdirevldnir.klLkpgGvl 99 
                  +iG+G G+llra+ e+ p+++++  +D    +     a  +la+r+++   ++   + +ll+l +   ++ D+ + + vl+ l  ++  ++l +ir  +Lkpg++l
  MMETSP0890-20130614|30496_1 143 DIGGGRGDLLRAIGEHWPELNLMlLIDQADGSAghSLAVDHLAARIGKA--RFAALTSSLLSLLPValNACDIFILHRVLSTLpdNQAISLLTHIRqVALKPGARL 246
                  8********************9999999999997777888888888633..444444555555555899**************7555669******4469999986 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.3e-05     0.029       3     109 ..     139     248 ..     137     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-05
    PF12847.2   3 krilDlGcGtGslslelarlrpgak.vvgvDpseesl..elarenaksldleeriellqgda.keelsllerfDavllkg.l.tldallaldeprrvlealp.kllkpggrlvi 109
                  ++++D+G G G+l+ ++ +  p+ + ++ +D  ++s+  +la ++++++    r++ l + + +  + +l++ D+ +l   l tl ++ a+    ++l +++  +lkpg rl+i
  MMETSP0890-20130614|30496_1 139 ETVCDIGGGRGDLLRAIGEHWPELNlMLLIDQADGSAghSLAVDHLAARIGKARFAALTSSLlSLLPVALNACDIFILHRvLsTLPDNQAI----SLLTHIRqVALKPGARLII 248
                  689*****************************887773357888886777889*********9999999999***9997743555555555....779999966899****998 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.5e-05     0.058       3     113 ..     137     253 ..     135     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAke...raqklgfenveFiqgdiee.leklle.esfDlvisnevlnaladpqkvlk..eierv.lkpggrlivespsl 113
                   + +v+D+G G G+ll+++  e  p+ + + +iD    +  ++     +a++ g  ++    +++ + l+  ++ + +D+ i + vl  l+d+q++     i++v lkpg rli+ +  l
  MMETSP0890-20130614|30496_1 137 GTETVCDIGGGRGDLLRAIG-EHWPELNlMLLIDQADGSAGHSLAvdhLAARIGKARFAALTSSLLSlLP--VAlNACDIFILHRVLSTLPDNQAISLltHIRQVaLKPGARLIILDTLL 253
                  5789****************.5566666699999999999888886667777777777778899999888..78899****************998665577776478888888877663 PP

>> PF09243.5  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.5e-05      0.15      37     130 ..     140     237 ..     125     251 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.5e-05
    PF09243.5  37 slldvgegpgtalwaaselweeleevlvidaseell..eis.kelaadapelkeaalrrdvvrea.leleeadLviisyvLleledesrekliknlWa 130
                  ++ d+g+g g  l a+ e w+el+ +l id+++     +++ ++laa + +++ aal +++++   + l+  d+ i+  vL  l d++   l+ ++ +
  MMETSP0890-20130614|30496_1 140 TVCDIGGGRGDLLRAIGEHWPELNLMLLIDQADGSAghSLAvDHLAARIGKARFAALTSSLLSLLpVALNACDIFILHRVLSTLPDNQAISLLTHIRQ 237
                  678***************************987543002221456777777777766666663321445555**************999888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       222  (0.0162376); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.62
# Mc/sec: 1321.86
//
Query:       MMETSP0890-20130614|30503_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-25   89.1   0.8    8.6e-25   87.3   0.0    2.3  3  PF04280.10 Tim44-like domain
  ------ inclusion threshold ------
      0.067   11.9   0.1       0.25   10.1   0.0    1.8  2  PF12725.2  Protein of unknown function (DUF3810)


Domain annotation for each model (and alignments):
>> PF04280.10  Tim44-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.18   1.2e+03      45      77 ..      46      79 ..      44     122 .. 0.75
   2 ?   -3.5   0.1       1.2   8.4e+03     114     128 ..     183     197 ..     176     201 .. 0.73
   3 !   87.3   0.0   1.3e-28   8.6e-25       1     146 [.     220     371 ..     220     372 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.18
   PF04280.10 45 ellteevyeelkaeiker.akqgetleatlvgir 77
                 +ll  + +eel++ei+e+ ++ g + +++l +++
  MMETSP0890-20130614|30503_1 46 TLLNGRSFEELSKEIAEKgRSLGAQARERLRDVD 79
                 5667778888888888886665555555544444 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.2
   PF04280.10 114 egdedkvkevrevWt 128
                  e  ++k+++ re W 
  MMETSP0890-20130614|30503_1 183 ESVQEKIEDAREFWE 197
                  556788888888885 PP

  == domain 3    score: 87.3 bits;  conditional E-value: 1.3e-28
   PF04280.10   1 lasalaeikqadpsFdeeeFlegakeayep.ileafakgDletLrellteevyeelkaeikerakqg.etleatlvgireaelleakie..gdeavvtvrfrtqqisvtddasGevvegdedkvkevrevWtfeRd..lgsedpnWrLvgiq 146
                  lasa++ ++++dp+F+ ee+  ++ + + p  ++afakgDl tL+++l++ +y++l++ei+ r+++g +  +a+ +++++ e+l + ++  ++ + ++v+  +qqi+++++++G+vveg++++++   +v +f+R+   ++++ +W+++++q
  MMETSP0890-20130614|30503_1 220 LASAVRWLRKLDPKFQLEEWRLAVSNDLAPrFVQAFAKGDLPTLKPWLSDGLYSRLAHEIRLRRQEGlRYDDARVLDVEHCEILATALDdnDGPPTFVVQLMAQQINCIRNREGQVVEGSPNDIRAYFYVLAFQRHyeQETTSLAWKVIDFQ 371
                  5899999********************************************************8888466789*************999878889*************99999***********************744444889**99876 PP

>> PF12725.2  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.082   5.6e+02      88     148 ..      41     100 ..      35     114 .. 0.76
   2 ?   10.1   0.0   3.6e-05      0.25     242     290 ..     160     209 ..     155     213 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.082
    PF12725.2  88 lgleeeeyseeelkelaeelieklnelrkkleedesgkvklklskkelekearkayeklse 148
                   +++++ ++ + ++el +e++ek ++l  + +e +   v++    + +++ear+ay++l+ 
  MMETSP0890-20130614|30503_1  41 HNVRRTLLNGRSFEELSKEIAEKGRSLGAQARE-RLRDVDMRSIGEFIAREAREAYRELAG 100
                  556666677788899999999999999888776.444788887788999999999999875 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.6e-05
    PF12725.2 242 ryvlnelyrldeeayeellkklspgvlkdlkenrefwekyen.pieevsk 290
                  + +l+ ++rl +++  e ++k s++v++++++ refwe  +n  ++++s+
  MMETSP0890-20130614|30503_1 160 QSILKGAKRLRKTKLGETAAKASESVQEKIEDAREFWETSQNpLVYQASS 209
                  5677788899999999**************************55666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:01.00
# Mc/sec: 908.22
//
Query:       MMETSP0890-20130614|30490_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-25   88.7   0.0    5.7e-25   87.4   0.0    1.7  1  PF13625.1  Helicase conserved C-terminal domain
    5.5e-17   62.0   0.0    1.2e-16   61.0   0.0    1.6  1  PF04851.10 Type III restriction enzyme, res subunit
      2e-11   43.1   0.0    3.2e-11   42.5   0.0    1.3  1  PF00176.18 SNF2 family N-terminal domain


Domain annotation for each model (and alignments):
>> PF13625.1  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0   1.2e-28   5.7e-25       1     127 [.      79     209 ..      79     211 .. 0.95

  Alignments for each domain:
  == domain 1    score: 87.4 bits;  conditional E-value: 1.2e-28
    PF13625.1   1 plivqsDltillepghpeaeaa.ealaafael.espehahtyrltplSlwnalaaGltaeeilefLerlSrtpvPqallyliedvarryGrlrl..gkaalvlrsddeavleelladkklkkllleriapt 127
                  p+++ ++ +ille ++  +++a ++l a+ae+  +pe +h+yr+tp Sl++a+++G   ++il++L  lS++++P++++++i+++++++G  +l  + ++ +++s d+++l+ ll+ ++++k++   +++t
  MMETSP0890-20130614|30490_1  79 PIWICPNGSILLEAHSKYYQQAyDFLVAIAEPvARPEFIHEYRITPNSLYAAVSLGIPVADILQLLNLLSKNDIPKSVVEFIKKCTKNFGLAKLvlRDNRHFVESIDPQALRTLLSCPSIRKVRDDNVDDT 209
                  68999************9998889********99********************************************************998865669************************99999987 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   2.6e-20   1.2e-16       2     182 ..     314     491 ..     313     493 .. 0.79

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 2.6e-20
   PF04851.10   2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlarkflflvprkelleqaleefkkfeskkiefekknia....vakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.eskseslealldefdviiiDEaHrlsakkkyreile.fkkafllglTATp 182
                  +k+r+yQe+++ ++  +     + ++g iv+++G+GKTl+a++++a + r +++l+ + + ++q++ +f++ ++  +e  +   +    ++ +d     ++   +d++e  ++++ i++tt+++++ + ++    + + + + ++ ++ e  ++i DE+H + a + +r++l  +++ ++lglTAT 
  MMETSP0890-20130614|30490_1 314 TKIRNYQEKCLSKMFGNQ----RARSGTIVLPCGAGKTLTAIAAAATMKRPTIVLCTNATSVQQWRYQFRHWTTIDREWDEDRDKpregKRREDVAPPRITLFTSDNKEPLHTEAGILITTYTMISYSGKR----AlDGEIIINQVKSREWGLMILDEVHVVPAAT-FRKVLGvCNAHCKLGLTATL 491
                  6899******99999653....567*****************99999999*******************66665555554443331121223333344577777788888899999********9977443....334445667777889****************.*****9999**********7 PP

>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   7.1e-15   3.2e-11       1     166 [.     319     490 ..     319     520 .. 0.70

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 7.1e-15
                  TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTT.HHHHHHHHHHHSTT--EEE-----.HHHH.HHHHHHS............--------SEEEE-TTHHH........HTT...TT----EEEEEEETTGGGG--SSSHHHHHHTTSEEEEE--B--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxx............xxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00176.18   1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssl.lqqWlneiekhagalrvvvyhgqt.rers.kvaesmv............sakqlatadvvittYdvlk........kekkeesllkkvewkrvvlDEahrlknsksklaeallklktkkrlcltGT 166
                  yQ +++  +   ++     r+g +    G GKTl++ia  +  +k       pt+v +  ++ +qqW  ++++++   r   +++++ + r+ k +e+ v            ++  +++a ++ittY +++        + +   +++k+ ew +++lDE h +  ++ ++   +++ +   +l lt+T
  MMETSP0890-20130614|30490_1 319 YQEKCLSKMFGNQRA----RSGTIVLPCGAGKTLTAIAAAA-TMKR------PTIVLCTNATsVQQWRYQFRHWTTIDRE--WDEDRdKPREgKRRED-VappritlftsdnKEPLHTEAGILITTYTMISysgkraldG-EIIINQVKSREWGLMILDEVHVVPAATFRKVLGVCNAH--CKLGLTAT 490
                  899999999998844....677788889***********99.8987......9****9865538**********332222..2222212222222222.235555888888666778899***********887766532.22455666677************877766666666544..45566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.38s 00:00:01.30 Elapsed: 00:00:00.80
# Mc/sec: 1731.37
//
Query:       MMETSP0890-20130614|30517_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-50  171.8   0.2    2.2e-50  171.6   0.1    1.0  1  PF13561.1 Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.1   1.6e-54   2.2e-50     125     243 .]       1     126 [.       1     126 [. 0.96

  Alignments for each domain:
  == domain 1    score: 171.6 bits;  conditional E-value: 1.6e-54
                  B-----EEEEEE-----------.--------THHHHHHHHHH----S---EEEEEE----------------......----------------CCC---HHHHHCSGGGTT----EEE-----T CS
    PF13561.1 125 mneggSivalsylaservipgyg.gmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggiek......mieyseenapLgkelsaeevaeaaafLlsdlasaiTgetlyvDgGln 243
                  mn+ g++++l+y+ase vipgyg gms+aKAaLEs+tR+lA+e+grk+giRvntisaGplk+raa+ai + +k      +i+ys++n+pL k+l a++v+  a fLls+la+a+Tg tlyvD+Gl+
  MMETSP0890-20130614|30517_1   1 MNKDGAALSLTYIASEDVIPGYGgGMSSAKAALESDTRTLAWEAGRKYGIRVNTISAGPLKSRAASAISEKGKkgfidlAIDYSKANSPLSKDLYADDVGASAFFLLSPLARAVTGVTLYVDNGLH 126
                  89******************************************************************99666666666*********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|30519_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-21   74.2  31.5    7.6e-11   41.1   9.3    2.1  2  PF00083.19 Sugar (and other) transporter
    3.2e-12   45.7  50.1    3.2e-12   45.7  34.7    2.0  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   9.3   1.1e-14   7.6e-11      47     183 ..      75     223 ..      39     231 .. 0.85
   2 !   39.2   7.0   4.2e-14   2.9e-10     239     440 ..     244     447 ..     234     454 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.1e-14
   PF00083.19  47 lsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakak......ksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlai.tvGilvaaiiglglnktsn......adgwrillglqlvpall 183
                   + ++ s++++g+++G++++g+l+d++GR ++l+++l+l+ +ga+ +a+a ++        +  +iv+R+++G+gvG+ + l+++ + E+  ++  g+ ++l   ++  + ++ ++i+ + l+ + +      + + r+ll++ ++pal+
  MMETSP0890-20130614|30519_1  75 ATAASSSVLFLGSIVGQVVLGFLGDTIGRIMGLVFSLILMTVGALASALAWDGlaetrtIVYITIIVARFVAGIGVGGSYPLSAVAAFEN-KTSQGGRTAALVRASWgLFWQVPGQITIYVLAGILAviplswTLRARLLLASGALPALA 223
                  4567899********************************************99*99876667788999*********************9.66667888888888887888999999999998888888886666677888888888865 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 4.2e-14
   PF00083.19 239 aswkelfsqktvrqrlligvvlqifqqltGinaimyYsptifetlglsks.....llvtiivgvvnfvftlvaiflvdr....fGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetk 440
                  ++ k lfs++t+++  lig+ l +f+   +   +++Ys  i e +   +      ++ + + ++v  + +l +i+l +     +GR  l +lG++++a++++ +g   l+++++    +++ai+f++l +a+   g +   +++ + lfp+++R+++ ++a+a++ +++++  + f  +++a g++  f++ a+++ +++++++f +p+  
  MMETSP0890-20130614|30519_1 244 TQLKALFSMPTALRYRLIGASLSWFLFDLYAYGVTVYSADIAEWIFNGNLsisenAWYNALGSAVGLGPVLASIYLLSAtkgdVGR--LQTLGFSTAAAFFCATGAAWLAGTSS----NGLAIIFLALRAAIVF-GTAVTTFIAPASLFPPRLRASCNGVAAAIGKVGGLVGTYGFILVADATGAPALFFILAFVATMGVFVTIFLLPCAF 447
                  56899******99999************************99877666666666699****************9665531111455..67778888887777777335555555....7788888887766655.67778889*****************************************************************865 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  34.7   4.7e-16   3.2e-12       5     353 ..      44     408 ..      40     409 .. 0.65
   2 !    8.4   4.0    0.0001       0.7     112     175 ..     382     445 ..     380     464 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 4.7e-16
   PF07690.11   5 aflaalarsilgpalpl.alaedlgispse.igwlltl....yslgyaiasllaGrlsdrfGrrrvlllglllfalglllll..f...a...sslwalllvlrvlqGlgagalfpagaaliad.wfpkeergral..gllsagfslGa.ilgpllgglla.sslgWrav...Flilailsllaav.lvllllprepperkrkspaeelrkepaplvpawklllkppvlw..illialllfffvfsglltllply........lqevlglspglllaglllgllaligaigalllgrlsdr....lgrrrrlllallllllaalglallaftssavwlllvlvliGf.glglvfptllalasdlappeerGtasglfntagslggalg 353
                  ++ + ++ +++++++ + ++ +    s+++   w++++     +lg++++++++G+l+d +Gr   l+++l+l+ +g+l+ +  +   a   + ++ +++v+r+++G+g g+ +p++a+++ +  ++   r+ al  + +++++++   i  ++l+g+la   l+W++     l+ ++l +laa+ ++l l  r++p + +k  +++           +k+l++ p  +   l+ a+l++ f f ++ + +++y        ++  l +     +++++ +l++++g++  l++ +l+      +gr  +l ++ ++++++a g a+la tss+ +++++l+l     +g++++t+ a  ++l+pp+ r++ +g++ ++g +gg++g
  MMETSP0890-20130614|30519_1  44 GCANVAGQMNYNSIVLAlLMLQK---SGDVvPAWATAAsssvLFLGSIVGQVVLGFLGDTIGRIMGLVFSLILMTVGALASAlaWdglAetrTIVYITIIVARFVAGIGVGGSYPLSAVAAFEnKTSQGGRTAALvrASWGLFWQVPGqITIYVLAGILAvIPLSWTLRarlLLASGALPALAALpFALELAGRDKPLSVNK--RTQ-----------LKALFSMPTALryRLIGASLSW-FLFDLYAYGVTVYsadiaewiFNGNLSI----SENAWYNALGSAVGLGPVLASIYLLSAtkgdVGRLQTLGFSTAAAFFCATGAAWLAGTSSNGLAIIFLALRAAiVFGTAVTTFIA-PASLFPPRLRASCNGVAAAIGKVGGLVG 408
                  55555555566666655455444...3344133433335556999********************************333333445432443225557************888888766555505555777777766777778888664888********666666665555666666666665544334444444444444..444...........6677777755442244444444.4666666666665333333223444444....55555555555555444333333332245669**************************************666477776666555.6666677*******************98 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0001
   PF07690.11 112 adwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllpr 175
                  a +fp++ r++ +g+++a   +G ++g     l+a++ g +a+F+ila+++ +++ + ++llp+
  MMETSP0890-20130614|30519_1 382 ASLFPPRLRASCNGVAAAIGKVGGLVGTYGFILVADATGAPALFFILAFVATMGVFVTIFLLPC 445
                  679************************99889999******************97666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:01.03
# Mc/sec: 1179.57
//
Query:       MMETSP0890-20130614|30521_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-13   48.6   8.0    4.4e-13   48.6   5.6    1.8  1  PF13639.1  Ring finger domain
    1.8e-09   37.1   7.1    1.8e-09   37.1   5.0    1.7  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.5e-06   27.3   6.7    8.4e-06   25.7   4.6    1.9  1  PF12678.2  RING-H2 zinc finger
      7e-06   25.4   5.8    1.3e-05   24.5   4.0    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
      1e-05   24.8   1.8    3.5e-05   23.2   1.3    1.9  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    3.5e-05   23.2   7.8    3.5e-05   23.2   5.4    1.9  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.01   15.1   1.3      0.015   14.6   0.1    2.0  2  PF02037.22 SAP domain
      0.014   14.9   0.4       0.48    9.9   0.0    2.7  3  PF10208.4  Degradation arginine-rich protein for mis-folding
      0.016   14.9   4.8      0.038   13.7   3.4    1.7  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
      0.068   12.4   0.1         34    3.9   0.0    3.8  4  PF00036.27 EF hand
        0.2   11.2   8.0        1.6    8.4   5.6    2.2  1  PF14446.1  Prokaryotic RING finger family 1
       0.42   10.0   6.0        0.2   11.0   1.7    2.2  2  PF11789.3  Zinc-finger of the MIZ type in Nse subunit
       0.95    9.3   6.7        1.8    8.4   3.3    2.3  2  PF11793.3  FANCL C-terminal domain
        4.9    7.1   9.4         12    5.9   6.5    1.6  1  PF12906.2  RING-variant domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   5.6   4.5e-16   4.4e-13       2      44 ..     119     161 ..     118     163 .. 0.96

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 4.5e-16
    PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssnsCPlCr 44 
                  +C+iCl++ + g+++ +l+CgH++H++C+ +wlr+s  CP+Cr
  MMETSP0890-20130614|30521_1 119 VCVICLEQQKVGDKAFKLSCGHLYHRDCVLQWLRKSCICPTCR 161
                  7*******988*******************************9 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   5.0   1.8e-12   1.8e-09       3      45 ..     118     161 ..     116     162 .. 0.89
   2 ?   -2.9   0.1       5.8   5.6e+03      36      42 ..     335     340 ..     330     341 .. 0.69

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.8e-12
    PF13923.1   3 fsCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  ++C+iCle+ +   +++ + CgHly+++C+ qwl+k +  CP+Cr
  MMETSP0890-20130614|30521_1 118 EVCVICLEQQKVgdKAFKLSCGHLYHRDCVLQWLRK-SCICPTCR 161
                  68******9865567788******************.*******9 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 5.8
    PF13923.1  36 kskkkCP 42 
                  k k++CP
  MMETSP0890-20130614|30521_1 335 K-KRSCP 340
                  3.78898 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   4.6   8.6e-09   8.4e-06      13      75 .]     108     161 ..      97     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 8.6e-09
    PF12678.2  13 wkwdised...nCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                   + d+++d   +C+iC ++        k+ +  +  ++    CgH +H +C+ +Wl+++  CP+cr
  MMETSP0890-20130614|30521_1 108 TEEDLAQDgneVCVICLEQQ-------KVGD--KAFKL---SCGHLYHRDCVLQWLRKSCICPTCR 161
                  45555544432699999888.......3333..33333...5***********************8 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   4.0   1.4e-08   1.3e-05       3      46 ..     118     163 ..     116     166 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.4e-08
    PF13920.1   3 ktCvvClerea...dvlllpCgHlclCeeCaerllkrkkkCpiCrsp 46 
                  + Cv+Cle+++   +++ l CgHl    +C+ ++l+++  Cp+Cr +
  MMETSP0890-20130614|30521_1 118 EVCVICLEQQKvgdKAFKLSCGHL-YHRDCVLQWLRKSCICPTCRYE 163
                  67*******8744359999*****.********************76 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.3   3.5e-08   3.5e-05      12      57 ..     119     158 ..     112     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 3.5e-08
                  B-TTT-S-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
    PF13445.1  12 aCpiskeqsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57 
                  +C i+ eq+    + ++L CGh + r++  ++++      + + CP
  MMETSP0890-20130614|30521_1 119 VCVICLEQQKVGDKAFKLSCGHLYHRDCVLQWLR------KSCICP 158
                  8******77889999******************9......378888 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   5.4   3.6e-08   3.5e-05       1      41 []     120     160 ..     120     160 .. 0.94
   2 ?   -2.3   0.1       3.3   3.2e+03      33      39 ..     334     340 ..     328     341 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 3.6e-08
                  -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                  C iCle +k  +    l C+H ++++C++++l+  k++ CP+C
  MMETSP0890-20130614|30521_1 120 CVICLEQQKVGDkaFKLSCGHLYHRDCVLQWLR--KSCICPTC 160
                  9*******988877999****************..9999**** PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.3
                  T-----T CS
   PF00097.20  33 rkkvkCP 39 
                  +kk++CP
  MMETSP0890-20130614|30521_1 334 SKKRSCP 340
                  7889999 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       7.4   7.2e+03      24      32 ..     220     228 ..     220     229 .. 0.80
   2 ?   14.6   0.1   1.6e-05     0.015       3      19 ..     349     365 ..     347     366 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 7.4
                  HHHHHHHHH CS
   PF02037.22  24 KaeLieRLk 32 
                  ++ Li+ L+
  MMETSP0890-20130614|30521_1 220 RQALIQALE 228
                  689999997 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.6e-05
                  T--HHHHHHHHHHTT-- CS
   PF02037.22   3 kltVaeLKaeLkkrGLp 19 
                  +l+V eLK eL+krGL+
  MMETSP0890-20130614|30521_1 349 NLSVRELKCELRKRGLE 365
                  69*************96 PP

>> PF10208.4  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.6   4.5e+03     118     130 ..     115     127 ..     100     137 .. 0.68
   2 ?    9.9   0.0   0.00049      0.48     103     136 ..     250     284 ..     204     300 .. 0.86
   3 ?    2.2   0.1      0.11   1.1e+02      99     132 ..     342     377 ..     335     383 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.6
                  XXXXXXXXXXXXX CS
    PF10208.4 118 eWgeeckgcleks 130
                  + +e c  cle++
  MMETSP0890-20130614|30521_1 115 DGNEVCVICLEQQ 127
                  4556666676655 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00049
                  XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF10208.4 103 dlkkl.kvkelkkilaeWgeeckgcleksdfikki 136
                  dl+++   ++lk ++   g +  gc+eksd+++++
  MMETSP0890-20130614|30521_1 250 DLERVwSPRDLKDLMLRVGVDSTGCIEKSDLLRHL 284
                  666552358*********************99864 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.11
                  XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
    PF10208.4  99 lktvdlkklkvkelkkilaeWg..eeckgcleksdf 132
                  l++ ++  l v+elk  l++ g  +e +gc++k  +
  MMETSP0890-20130614|30521_1 342 LSSDEIPNLSVRELKCELRKRGleHEIRGCIDKDHL 377
                  5677888999********9987225689***99654 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.4   3.9e-05     0.038      51      82 ..     137     165 ..     111     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.9e-05
    PF12861.2  51 kckhnfhlhcilkwletetskglcpmcrqtfk 82 
                  +c h +h  c+l+wl ++     cp cr +f+
  MMETSP0890-20130614|30521_1 137 SCGHLYHRDCVLQWLRKS---CICPTCRYEFR 165
                  6**************986...57*****9986 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.035        34      14      27 ..     193     206 ..     192     208 .. 0.87
   2 ?    3.2   0.0     0.058        57       2      25 ..     260     283 ..     259     286 .. 0.87
   3 ?   -2.9   0.1       5.1   4.9e+03       8      14 ..     323     329 ..     323     329 .. 0.85
   4 ?   -0.2   0.0      0.72     7e+02      15      27 ..     370     382 ..     369     384 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.035
                  SSEBEHHHHHHHHH CS
   PF00036.27  14 dGkIsfeEfkealk 27 
                  +GkIs +E+ ++++
  MMETSP0890-20130614|30521_1 193 SGKISTQELATIYQ 206
                  8********98875 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.058
                  HHHHHHHHCTTTSSEBEHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkea 25 
                  lk+++  + +D +G I+++++++ 
  MMETSP0890-20130614|30521_1 260 LKDLMLRVGVDSTGCIEKSDLLRH 283
                  889999999***********9876 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 5.1
                  HHCTTTS CS
   PF00036.27   8 efDkDgd 14 
                  ++D+D++
  MMETSP0890-20130614|30521_1 323 KYDTDHN 329
                  59***97 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.72
                  SEBEHHHHHHHHH CS
   PF00036.27  15 GkIsfeEfkealk 27 
                  G I+++ ++++l+
  MMETSP0890-20130614|30521_1 370 GCIDKDHLRRVLA 382
                  8999999999987 PP

>> PF14446.1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.6    0.0016       1.6       3      52 ..     115     165 ..     113     168 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0016
    PF14446.1   3 dtktrCavCgkklkdkddivvCpeCgapyHreCw..eeageCilascgegfe 52 
                  d ++ C +C ++ k++d ++    Cg  yHr+C+      +Ci   c  +f+
  MMETSP0890-20130614|30521_1 115 DGNEVCVICLEQQKVGDKAFK-LSCGHLYHRDCVlqWLRKSCICPTCRYEFR 165
                  56789*******999999998.79*********9422345788755886665 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7    0.0002       0.2      29      56 ..     137     160 ..     114     161 .. 0.83
   2 ?   -1.5   0.1       1.7   1.7e+03      26      32 ..     335     341 ..     326     344 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0002
                  ----EEEHHHHHHHHTTT--B------- CS
    PF11789.3  29 kCnHvFEkeaIlkmlkrkkkvkCPvaGC 56 
                   C H + ++ +l+ l  +k++ CP   C
  MMETSP0890-20130614|30521_1 137 SCGHLYHRDCVLQWL--RKSCICPT--C 160
                  8**************..99*****9..7 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.7
                  EES---- CS
    PF11789.3  26 tskkCnH 32 
                  +++ C+H
  MMETSP0890-20130614|30521_1 335 KKRSCPH 341
                  4556666 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.3    0.0018       1.8       5      43 ..     120     153 ..     116     165 .. 0.78
   2 ?   -0.6   0.0       1.2   1.2e+03      12      30 ..     341     359 ..     338     364 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0018
                  -SSS--SS--------B--S-TT----B-SGGGHHHHHH CS
    PF11793.3   5 CgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrs 43 
                  C iC+ ++   ++  +      +C++ +H+ C+ +Wlr+
  MMETSP0890-20130614|30521_1 120 CVICLEQQKVGDKAFK-----LSCGHLYHRDCVLQWLRK 153
                  8888877775555444.....56899***********97 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.2
                  S--------B--S-TT--- CS
    PF11793.3  12 rldsgevpdisCdnekCnk 30 
                  +l+s+e+p+ s  + kC +
  MMETSP0890-20130614|30521_1 341 HLSSDEIPNLSVRELKCEL 359
                  67899************86 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.5     0.012        12       1      47 []     120     160 ..     120     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.012
                  ETTTTEE-----...---------TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2   1 CriCleeeeese.plirpCkCkGslklvHesCleeWlkesaktkCelC 47 
                  C+iCle+++  + +++  C   G  +l H++C+ +Wl+  ++  C  C
  MMETSP0890-20130614|30521_1 120 CVICLEQQKVGDkAFKLSC---G--HLYHRDCVLQWLR--KSCICPTC 160
                  9****99887664666666...4..69**********9..55667777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       569  (0.0416179); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:01.13
# Mc/sec: 809.30
//
Query:       MMETSP0890-20130614|30531_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   27.2   0.0    2.8e-06   26.5   0.0    1.3  1  PF00255.14 Glutathione peroxidase
  ------ inclusion threshold ------
      0.096   11.7   0.0       0.12   11.4   0.0    1.1  1  PF10150.4  Ribonuclease E/G family


Domain annotation for each model (and alignments):
>> PF00255.14  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     4e-10   2.8e-06      38     107 ..       9      81 ..       5      82 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 4e-10
                  HHHHHHHHHHHHTT---EEEEEE---------S-HHHHHHHHHHH..--..--SEEB---------S-HHHHHH CS
   PF00255.14  38 qykeleelqekykekglvilgFPCnqFgkqepgeneelkevragk..ye..vtfellekievnGekedplykfl 107
                  ++  l+ l +ky +kgl+i +FP +q +  ep   e ++  + ++  ++  +   +++ki++ G+ ++ply++l
  MMETSP0890-20130614|30531_1   9 NFAGLRFLASKYGPKGLRIWAFPTDQGY-FEPDVAELIRAKAYQQfgFGqfPVAVVFDKIDILGKTQHPLYAYL 81 
                  7889999*******************44.455555554443333311321123458*****************9 PP

>> PF10150.4  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05      0.12      36     104 ..      98     166 ..      85     182 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.8e-05
    PF10150.4  36 eelkpeevGlivRtaaegaseeelkedleallklweeiqekekkkkapsllyeeldlvlrvlrdlleed 104
                  e+++ +  G ++R    + +  ++++d+++l +  ++  +++++k ++sll + +d +++++rd ++e+
  MMETSP0890-20130614|30531_1  98 EKFILDANGNVIRRYPRKLTGFDFESDIAQLIDSQQSSDQDNEQKDQSSLLPKPDDSFEQAWRDAAREA 166
                  5555566889999999999999*******************888888*****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 585.78
//
Query:       MMETSP0890-20130614|30538_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.72
# Mc/sec: 582.45
//
Query:       MMETSP0890-20130614|30535_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00043   20.2   0.0      0.012   15.6   0.0    2.5  2  PF13401.1  AAA domain
    0.00099   18.8   0.0     0.0038   17.0   0.0    1.9  2  PF13173.1  AAA domain
     0.0017   18.6   0.1     0.0047   17.1   0.0    2.0  1  PF13191.1  AAA ATPase domain
     0.0017   17.9   0.6      0.018   14.6   0.0    2.3  3  PF01637.13 Archaeal ATPase
     0.0068   14.8   0.0      0.021   13.2   0.0    1.7  2  PF10443.4  RNA12 protein
  ------ inclusion threshold ------
      0.029   14.1   0.2       0.28   10.9   0.0    2.7  3  PF13671.1  AAA domain
      0.037   14.6   0.0       0.16   12.6   0.0    2.1  1  PF13207.1  AAA domain
      0.043   13.1   0.0      0.093   12.0   0.0    1.5  1  PF01695.12 IstB-like ATP binding protein
      0.081   12.0   0.1        1.6    7.7   0.0    2.6  3  PF12846.2  AAA-like domain
      0.093   12.0   0.2        2.6    7.3   0.0    2.5  3  PF01580.13 FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.4e-06     0.012       7      54 ..     215     254 ..     209     289 .. 0.83
   2 ?    1.8   0.0      0.15   2.1e+02      71     113 ..     418     464 ..     356     476 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.4e-06
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast.spkel 54 
                  lv++G+ G+GK++ +++++           +++v++ve++++  + +e+
  MMETSP0890-20130614|30535_1 215 LVICGPRGAGKSFIVNQVLAG---------RPKVAYVELTEKLnDTTEF 254
                  89******************9.........7888888888766544444 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.15
    PF13401.1  71 tteellealqealrrrrtrlliiDEaqrL....s..eealeelrslldd 113
                  ++++ ++ ++++++++++     DE+++L    +  ++ +++++ l+d+
  MMETSP0890-20130614|30535_1 418 KNAAERSVFEKYIDNKKR--DACDELDNLlsqsNqkDKFIKLIKALVDN 464
                  444444444444444444..35699999767651569999999999986 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.8e-06    0.0038       4      44 ..     214     251 ..     211     278 .. 0.78
   2 ?   -1.8   0.0       1.8   2.4e+03      55      87 ..     426     465 ..     394     470 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.8e-06
    PF13173.1   4 ilvitGpRrvGKttllkqlakellkeesilyinlddeelrk 44 
                   lvi GpR++GK+++++q++  +    ++ y++l ++ +++
  MMETSP0890-20130614|30535_1 214 YLVICGPRGAGKSFIVNQVLAGRP---KVAYVELTEKLNDT 251
                  689****************98777...99999999855533 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.8
    PF13173.1  55 leklkekkkylflDEiqev.......pewedalkslvddg 87 
                  +ek+ ++kk    DE  ++       +++ + +k lvd+ 
  MMETSP0890-20130614|30535_1 426 FEKYIDNKKRDACDELDNLlsqsnqkDKFIKLIKALVDNP 465
                  3332223333444555555555555567777777777765 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.5e-06    0.0047      10      51 ..     200     235 ..     192     473 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.5e-06
    PF13191.1  10 eaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpiller 51 
                  ++++a++++  +++  l++ Gp+G GKS ++++     +l++
  MMETSP0890-20130614|30535_1 200 RRITAHVNKRDPTN-YLVICGPRGAGKSFIVNQ-----VLAG 235
                  56777777666666.8*****************.....5543 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-05     0.018      13      57 ..     205     245 ..     200     326 .. 0.75
   2 ?    0.6   0.1      0.25   3.5e+02      42     148 ..     418     462 ..     349     473 .. 0.64
   3 ?    0.8   0.1      0.22     3e+02      40      92 ..     416     468 ..     409     493 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.3e-05
                  HHHHH..-SEEEEE--TT---HHHHHHHHHH-..---HHHHH--- CS
   PF01637.13  13 eilerepnsiiviyGprrsGKTaLlkeileelkekgkrvvyyinl 57 
                  ++ +r+p + +vi Gpr+ GK+ +++++l  +     +v y++  
  MMETSP0890-20130614|30535_1 205 HVNKRDPTNYLVICGPRGAGKSFIVNQVLAGR----PKVAYVELT 245
                  6778999***********************99....345555442 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.25
                  HH-..---HHHHH------HHHHHHHH....HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHHHH----EEEEEETGGGGG-------HHHHHHHHHH CS
   PF01637.13  42 eelkekgkrvvyyinlreefeskleefieeeeekkklakalgialpkaeleeilkkksklvflaleellealkkkgkkiiiiiDElqklilglngakslvkeLlnli 148
                  ++  e +  + y++n ++++ ++l++++ ++++k+k+ k ++                                                               l+
  MMETSP0890-20130614|30535_1 418 KNAAERSVFEKYIDNKKRDACDELDNLLSQSNQKDKFIKLIK--------------------------------------------------------------ALV 462
                  333333333344444444444444444444444444444333..............................................................333 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.22
                  HHHH-..---HHHHH------HHHHHHHH....HHHS-SHHHHHHHHT....- CS
   PF01637.13  40 ileelkekgkrvvyyinlreefeskleefieeeeekkklakalgialpkaele 92 
                  ++++  e +  + y++n ++++ ++l++++ ++++k+k+ k ++  + ++++ 
  MMETSP0890-20130614|30535_1 416 AAKNAAERSVFEKYIDNKKRDACDELDNLLSQSNQKDKFIKLIKALVDNPKGV 468
                  55566566666667777777777777777777777777777776666665554 PP

>> PF10443.4  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.5e-05     0.021      15      51 ..     210     245 ..     195     259 .. 0.77
   2 ?   -1.4   0.0       0.4   5.5e+02     179     219 ..     312     352 ..     284     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
    PF10443.4  15 nvntfivvkgPrGSGkkeLvldrvlkdrkkvLvidCd 51 
                   +  + v+ gPrG Gk+ +v ++vl+ r kv +++  
  MMETSP0890-20130614|30535_1 210 DPTNYLVICGPRGAGKSFIV-NQVLAGRPKVAYVELT 245
                  456699**********9888.*******999888754 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.4
    PF10443.4 179 vqsniAhVifltedvsaskaLskaLpnqvfktislgDasee 219
                  v ++ Ah i++ +d s++ +L++    q f  i   D++e 
  MMETSP0890-20130614|30535_1 312 VVKGYAHGILVLSDPSTAFELNQDAARQRFMWIDSFDLNEL 352
                  67889999999999999999999888888888777776654 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.3   3.2e+03      84     115 ..     107     138 ..     102     152 .. 0.84
   2 ?   10.9   0.0   0.00021      0.28       3      25 ..     216     241 ..     215     267 .. 0.83
   3 ?   -1.0   0.0      0.97   1.3e+03     112     121 ..     412     421 ..     326     484 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.3
    PF13671.1  84 erarfvklakrlgvpvrivylevpeetlreRl 115
                  ++a ++++++ ++ +    +++ p +++r+R 
  MMETSP0890-20130614|30535_1 107 TWALVREIWRYYSKRLNEWWFNLPSQQARRRY 138
                  68888999999999999999999999999986 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00021
    PF13671.1   3 llvGlpGsGKstlaerllkklg...y 25 
                  +++G+ G+GKs+ ++++l+ ++   y
  MMETSP0890-20130614|30535_1 216 VICGPRGAGKSFIVNQVLAGRPkvaY 241
                  78**************9987775544 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.97
    PF13671.1 112 reRlakRern 121
                  ++R a+++++
  MMETSP0890-20130614|30535_1 412 AARSAAKNAA 421
                  3333333332 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.16       3      32 ..     216     271 ..     215     360 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
                  --B--TT---HHHHHHH.HHH......................STEE...EEEGGG CS
    PF13207.1   3 aitGppGsGKsTlakeL.aer......................lglp...vlsldd 32 
                  +i+Gp G+GKs++ +++ a r                      lg++   ++++d+
  MMETSP0890-20130614|30535_1 216 VICGPRGAGKSFIVNQVlAGRpkvayvelteklndttefvrrkLGFEsaeYFDIDS 271
                  79**************9533622222222222222222222223322222455555 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.8e-05     0.093       7      64 ..     173     229 ..     169     250 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.8e-05
   PF01695.12   7 rlklaklpakktle..dfdfdaargldkrlikelaslsfveqaenlvllGpsGvGKthlA 64 
                  rl+l kl++++++e   + +   +gl++r ++++ + +  +    lv++Gp G+GK+++ 
  MMETSP0890-20130614|30535_1 173 RLRLTKLRMQQNFEpgFMRYVPREGLERRITAHVNKRDPTN---YLVICGPRGAGKSFIV 229
                  89999999998887435788888999999999999987655...8************984 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0012       1.6       3      23 ..     214     234 ..     212     239 .. 0.86
   2 ?   -1.2   0.0      0.62   8.5e+02     191     219 ..     276     304 ..     236     319 .. 0.71
   3 ?    0.6   0.0      0.17   2.3e+02     218     264 ..     394     452 ..     369     467 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0012
    PF12846.2   3 ntlilGppGsGKSvllkklvl 23 
                  + +i+Gp G+GKS+ ++ ++ 
  MMETSP0890-20130614|30535_1 214 YLVICGPRGAGKSFIVNQVLA 234
                  579**************9865 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.62
    PF12846.2 191 ttfdldldariivfdlsglkgpgteeedk 219
                   +  +++d+++ v++++g+ +p+t + + 
  MMETSP0890-20130614|30535_1 276 FKHCIGSDKPVLVVEIEGIIKPNTVRLQA 304
                  4556788999*********9887764433 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.17
    PF12846.2 218 dkalaaavllaiwaaarrnfra.pkdlrd...........kllviDEahrllgspegad 264
                  ++++aa++ +++ ++a++++r+  k++++           k+  +DE+ +ll+ +   d
  MMETSP0890-20130614|30535_1 394 AETAAAMAVALLGNDATQAARSaAKNAAErsvfekyidnkKRDACDELDNLLSQSNQKD 452
                  44445555555555555555551555555899999999999999999999997644444 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0019       2.6      22      59 ..     193     233 ..     176     235 .. 0.84
   2 ?   -3.1   0.0       2.9   3.9e+03      58      84 ..     306     333 ..     302     336 .. 0.88
   3 ?    1.8   0.1     0.093   1.3e+02     152     196 ..     430     475 ..     367     483 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
   PF01580.13  22 lgkegsgkplvadlvkap...hlLiaGatgsGKStflrtLi 59 
                  +++eg  + ++a+++k      l+i+G  g+GKS +++  +
  MMETSP0890-20130614|30535_1 193 VPREGLERRITAHVNKRDptnYLVICGPRGAGKSFIVNQVL 233
                  6778888899999999888988999**********999765 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.9
   PF01580.13  58 LilslaathtPeevqlyliDpkgg.ela 84 
                  Li+sl+  + + +  l+l Dp+++ el+
  MMETSP0890-20130614|30535_1 306 LIKSLCVVKGYAHGILVLSDPSTAfELN 333
                  99999999999999*******9998887 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.093
   PF01580.13 152 elpslvvivderaelrlaapkdssrrvedalsrlark...graagihl 196
                  +    +++ de+  l     ++  ++++++++ l++    +raa++h+
  MMETSP0890-20130614|30535_1 430 IDNKKRDACDELDNLLSQSNQK--DKFIKLIKALVDNpkgVRAAEVHF 475
                  4556677778888777666666..478888888888888899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       819  (0.0599035); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        60  (0.00438853); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.98u 0.40s 00:00:01.38 Elapsed: 00:00:00.82
# Mc/sec: 1545.94
//
Query:       MMETSP0890-20130614|30540_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.88
# Mc/sec: 1375.18
//
Query:       MMETSP0890-20130614|30553_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-16   57.7   0.0    1.4e-15   56.9   0.0    1.4  1  PF00583.19 Acetyltransferase (GNAT) family
    1.6e-09   37.6   0.0    3.7e-09   36.5   0.0    1.6  2  PF13508.1  Acetyltransferase (GNAT) domain
      1e-07   31.4   0.0    1.7e-07   30.7   0.0    1.3  1  PF08445.5  FR47-like protein
    4.8e-07   29.7   0.0    7.3e-07   29.2   0.0    1.4  1  PF13673.1  Acetyltransferase (GNAT) domain
     0.0047   17.1   0.0     0.0063   16.7   0.0    1.2  1  PF13302.1  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.016   14.9   0.1    1.2  1  PF13523.1  Acetyltransferase (GNAT) domain
      0.016   14.7   0.0      0.034   13.6   0.0    1.5  1  PF12568.3  Acetyltransferase (GNAT) domain
      0.039   13.8   0.1      0.073   12.9   0.0    1.4  1  PF08444.5  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   8.2e-19   1.4e-15       3      83 .]     103     185 ..     101     185 .. 0.95

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 8.2e-19
                  ETTEBEEEEEEEEECTTSCS.TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH.TTHSEEEEEEETTCHHHHHHHHHTT-E CS
   PF00583.19   3 edgelvGfaslsvigedgra.ertayieglaVspeyrgqGiGkaLleallekare.rglerielevesgndraiklYeklGFk 83 
                   +ge+++f+ +   ++ +++  ++ yi +laV+pe+r+qGi+++L+ +++++ ++ ++ ++++l ve +n  a+++Y  lG++
  MMETSP0890-20130614|30553_1 103 WEGEPIAFVDVDARPKGDPElNPRPYISDLAVRPEFRRQGIATQLVLYCEDIVQRiWQKQFVYLRVETKNAVALRMYANLGYE 185
                  68************99875579***********************************************************96 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.2e-12   3.7e-09       8      78 ..     101     185 ..      89     186 .. 0.79
   2 ?   -2.6   0.0       3.3   5.6e+03      37      63 ..     191     218 ..     187     226 .. 0.51

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.2e-12
    PF13508.1   8 leddgeivGflvl..redgeta.....yiggvavdpeyrgkGlGskllnkl....keeygekpivllarpa...rkkFYeklGFk 78 
                  ++ +ge ++f+ +  r+ g+       yi+ +av+pe+r++G++++l+ ++    ++ ++++ ++l ++++   ++++Y++lG++
  MMETSP0890-20130614|30553_1 101 VRWEGEPIAFVDVdaRPKGDPElnprpYISDLAVRPEFRRQGIATQLVLYCedivQRIWQKQFVYLRVETKnavALRMYANLGYE 185
                  455999999999977444442245677***********************97777788888889998865444589*******97 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.3
    PF13508.1  37 eyrgkGlGskllnkl.keeygekpivll 63 
                  + +gk   +k l+++ ++ +  k++ l+
  MMETSP0890-20130614|30553_1 191 QIQGKATLRKSLQEAsTQTLSMKDVALS 218
                  4556666666666664444444444454 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     1e-10   1.7e-07      23      82 ..     128     189 ..     122     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1e-10
                  -----EE-GGG--------HHHHHHHHHH-..--S-EEEEEETT-HHHHHHHHH---B---- CS
    PF08445.5  23 elgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfekiee 82 
                  +++ l v+pe+rr+G +++lv      + +  + + v l v ++N  + r+y  lG+e+  +
  MMETSP0890-20130614|30553_1 128 YISDLAVRPEFRRQGIATQLVLYCEDIVQRiwQKQFVYLRVETKNAVALRMYANLGYELFSH 189
                  7999*****************765444444444567888999****************9865 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.3e-10   7.3e-07      48     117 .]     100     184 ..      55     184 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.3e-10
    PF13673.1  48 vaerggevvGfaglk..pdas........lsllyvrpeargrGigraLldaiea...ea.rkgikvltte.asklarplyerlGf 117
                  +++ +ge+++f+ ++  p++         +s+l+vrpe+r++Gi+++L+ + e+   ++ +k + +l +e +++ a ++y  lG+
  MMETSP0890-20130614|30553_1 100 IVRWEGEPIAFVDVDarPKGDpelnprpyISDLAVRPEFRRQGIATQLVLYCEDivqRIwQKQFVYLRVEtKNAVALRMYANLGY 184
                  45667888999888754333366778888********************876662114456699999999**************8 PP

>> PF13302.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.7e-06    0.0063      36     141 ..      77     184 ..      43     185 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.7e-06
    PF13302.1  36 tleeteawlesrakawkatgfgvfaicdketgefiGdiglkle...edeeew...peig.ymlapeywgkGyatealralldyafeelglerlvaiidaeNeaSrrvleklGf 141
                     ++++ l+ r+++  ++ +++ +++ +   e i ++ ++ +   ++e      p i  ++++pe++++G+at  +  + d + +  + + ++ +++++N+   r +  lG+
  MMETSP0890-20130614|30553_1  77 AIRAHREHLRLREHHGGEE-HVQTIVRWEG--EPIAFVDVDARpkgDPE--LnprPYISdLAVRPEFRRQGIATQLVLYCEDIVQRIWQKQFVYLRVETKNAVALRMYANLGY 184
                  5555566664233333333.5555555444..69******422233444..13457766699**********************99999999**************9999997 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   9.6e-06     0.016      36     141 ..      85     189 ..      63     197 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.6e-06
    PF13523.1  36 eeleeqleadphsrpligevdgepvgyfei.yrvkedydaadsdrgfhllvaeprargkgltrawlrsllhylfadprtervvvepdvdNkrmialleraGFekvge 141
                   +l+e+  + + +   i+ + gep++++ +  r+k d +++++ +  +l+v +p++r +g++++++  + + +++  + + v + ++ +N+ +++ ++ +G+e    
  MMETSP0890-20130614|30553_1  85 LRLREHHGGEE-HVQTIVRWEGEPIAFVDVdARPKGDPELNPRPYISDLAV-RPEFRRQGIATQLVLYCEDIVQRIWQKQFVYLRVETKNAVALRMYANLGYELFSH 189
                  44555544333.3356899*********6648999999******9999977.99******************999666999*********************97655 PP

>> PF12568.3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.034      63     111 ..     128     176 ..     124     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
    PF12568.3  63 vlsdlcvRevTRrRGVGlyLleearrqlpevkewvlaledveeaekavl 111
                   +sdl vR + Rr G++++L+  +++  +++ + ++    ve++++ +l
  MMETSP0890-20130614|30553_1 128 YISDLAVRPEFRRQGIATQLVLYCEDIVQRIWQKQFVYLRVETKNAVAL 176
                  589**********************999999999999888886554333 PP

>> PF08444.5  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.3e-05     0.073      29      81 ..     136     190 ..     131     197 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.3e-05
    PF08444.5  29 pkYrrqglvahvivkqa...kalekkgiPvYshvdkenekvqklseslghveipce 81 
                  p++rrqg  ++++   +   + + +k++ vY+ v+++n +  ++ ++lg+  ++++
  MMETSP0890-20130614|30553_1 136 PEFRRQGIATQLVLYCEdivQRIWQKQF-VYLRVETKNAVALRMYANLGYELFSHN 190
                  89*****999987765511155667777.9*******************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.44s 00:00:01.04 Elapsed: 00:00:00.81
# Mc/sec: 757.37
//
Query:       MMETSP0890-20130614|30557_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:01.03
# Mc/sec: 216.37
//
Query:       MMETSP0890-20130614|30559_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-08   32.9   1.2    1.3e-07   31.6   0.9    1.6  1  PF01734.17 Patatin-like phospholipase
  ------ inclusion threshold ------
      0.047   13.0   0.8       0.08   12.2   0.5    1.3  1  PF07698.6  7TM receptor with intracellular HD hydrolase


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.9   1.9e-11   1.3e-07      12     191 ..      17     166 ..      11     184 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.9e-11
   PF01734.17  12 fslgalka....L...kkelgdrfdiisGtSaGaiiaallalgrdpaalve.dlrelllnkffdrdllirelaanlaarlsgllgpgglfdaealrellrkvlgdltlkrlsarlgklpllkslataaqavpaittataasastantanslyteddeddvpladavraSsafPglfppvsldgelyvD 191
                  +slga++     +      l  +++  sG+S Ga iaalla+ + + ++v+ ++ +l  ++ f  +            +    +++gg++++++l ++++ v g++   +  +r++++                          + ++  + ++     ++la a+ aS +fPg+f p s++g++++D
  MMETSP0890-20130614|30559_1  17 ASLGAIQGiaaaFgggTAVLRAHITACSGASSGAKIAALLAHSSIDLNSVAsTMMNLHPAQVFFHW------------NDLTVPWRGGYLTGSSLIRFMENVWGKGFQMENLSRPFGC--------------------------TAFDLETRSQIILQSGDLATACQASGSFPGVFAPISFQGKYLWD 166
                  67788888444414445667999********************77777654155555555555555............999*******************886666555555555555..........................38999999********************************8877 PP

>> PF07698.6  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   1.2e-05      0.08      95     161 ..       5      71 ..       3      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
    PF07698.6  95 lisllfgnnleflllalvsglvgalslrrlrsRsqllragllvalvnllvilalglisssnlswlei 161
                   +s+  g++ ef+ l+++ g+++a+ ++    R+++  ++   +++ ++ +la + i+ +++  + +
  MMETSP0890-20130614|30559_1   5 AVSISQGFGCEFASLGAIQGIAAAFGGGTAVLRAHITACSGASSGAKIAALLAHSSIDLNSVASTMM 71 
                  56777899*********************************************99988777653444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 971.32
//
Query:       MMETSP0890-20130614|30562_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 514.13
//
Query:       MMETSP0890-20130614|30558_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:00.83
# Mc/sec: 698.70
//
Query:       MMETSP0890-20130614|30569_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   50.6   0.8    2.6e-13   49.7   0.6    1.5  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
     0.0048   16.8   0.0     0.0074   16.2   0.0    1.3  1  PF00125.19 Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.011   14.7  12.9      0.011   14.7   9.0    1.1  1  PF09073.5  BUD22
      0.019   13.3   4.5     0.0095   14.2   2.0    1.3  1  PF06284.6  Cytomegalovirus UL84 protein
      0.067   12.2   3.0      0.073   12.1   2.1    1.2  1  PF13203.1  Putative metallopeptidase domain
      0.068   11.3   9.5      0.081   11.0   6.6    1.1  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
      0.076   11.6   9.7      0.089   11.4   6.7    1.1  1  PF10310.4  Protein of unknown function (DUF2413)
       0.21    9.1   3.3       0.25    8.8   2.3    1.1  1  PF10344.4  Mitochondrial protein from FMP27
       0.22   10.9  15.3       0.27   10.6  10.6    1.3  1  PF03286.9  Pox virus Ag35 surface protein
       0.28    9.5   8.6       0.44    8.8   6.0    1.2  1  PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
       0.42   10.1  18.6        0.5    9.9  12.9    1.2  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
        7.1    6.4  17.3        9.5    6.0  12.0    1.2  1  PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)


Domain annotation for each model (and alignments):
>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.6   2.3e-16   2.6e-13       4      65 .]      14      76 ..      12      76 .. 0.98

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2.3e-16
                 -HHHHHHHHHHH.TT--.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
   PF00808.18  4 PiarvkkImksd.pdarkiskdAkeliaecveefieelaseAaeickkekrKTikaediklav 65
                 P+a + +I+k + pd+ +i+k+Ak  +++++  fi +l++ A+++c+++kr T++a di +av
  MMETSP0890-20130614|30569_1 14 PAACITRIVKAAlPDQVQITKEAKAAFSKSAGIFILYLTTCANDHCHEKKRQTVSAVDIMQAV 76
                 999**********************************************************98 PP

>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.5e-06    0.0074       6      72 ..      13      76 ..       8      78 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.5e-06
   PF00125.19  6 ilklpvsRvvrelkegfyaelrisaealvalqealedlleeiledAgllaehakrktitprdiqlAv 72
                  + +++ R+v+   ++   +  i++ea  a  + +  ++  +++ A+  +++ kr t+++ di+ Av
  MMETSP0890-20130614|30569_1 13 PPAACITRIVKAALPD---QVQITKEAKAAFSKSAGIFILYLTTCANDHCHEKKRQTVSAVDIMQAV 76
                 5788999999999998...4689*****************************************998 PP

>> PF09073.5  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   9.0   9.4e-06     0.011     141     233 ..      88     176 ..      18     181 .] 0.50

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.4e-06
    PF09073.5 141 lgiekkaekekkkkkkkkkkkkkedese.dkdeeessesedssddeeseeddsdsdeeeesdsedlsqydallvsssdeesgeeqdesddeees 233
                  l    ++ + ++ +k+k+k+++ + + + +k++++s+ + ++++d  ++e+++ + ++ +++     +  a++++++de+ ++++++ +d+e++
  MMETSP0890-20130614|30569_1  88 LQTFLQGYRANEGAKRKSKQSSPKASTTtKKSKKQSQTQNEEEEDFNDQEENQAKPMQIDAE-----EAPAAVAPEDDEDVDDDDEDMVDDEDD 176
                  44444444444444444443333333220222222222222222223333333333333333.....344566666666666554333333332 PP

>> PF06284.6  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.0   8.4e-06    0.0095      51     141 ..      48     139 ..      23     159 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.4e-06
    PF06284.6  51 iltlt...dkhdikqpltrrGtyrliqlhvdlrpeelqhpfqillsaplqlvensearrakataseeetaaseekekkkeeeededdrrddrer 141
                  il lt   + h   + +    +  ++q   dl+ ee++ p+q +l        +++ r++k ++ +  t++++ k++++ ++e+e+d +d++e+
  MMETSP0890-20130614|30569_1  48 ILYLTtcaNDHCHEKKRQTVSAVDIMQAVSDLEMEEFKVPLQTFLQGYRAN--EGAKRKSKQSSPKASTTTKKSKKQSQTQNEEEEDFNDQEEN 139
                  55554222455555566666778899999*************999876543..44555555555555555555555544444444444444443 PP

>> PF13203.1  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.1   6.4e-05     0.073     142     204 ..      94     162 ..       7     177 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.4e-05
    PF13203.1 142 k..........kkrsdkqsdsstdggdgsgesegqgeqdskknrkdapekakvralakgesadlaespegksa 204
                             +k+s+++++++t++++++++ +++ e+d + +++   ++ak ++  ++e +++    e  ++
  MMETSP0890-20130614|30569_1  94 GyranegakrkSKQSSPKASTTTKKSKKQSQTQNEEEEDFNDQEE---NQAKPMQIDAEEAPAAVAP-EDDED 162
                  044444444447888888888888888886655555555444443...3466666665555544332.22222 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.6   7.1e-05     0.081      69     155 ..      83     168 ..      50     180 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.1e-05
    PF06375.6  69 plkvpglplsdqyvkleeerrh.rerlekdkrkkkkrekekrgkrrkrslgtesdediapaqrvdivteempenalpsdeddkdpndp 155
                   +kvp   + + y   e  +r+ ++   k     kk   +k+++ ++++ +   d++   a+ ++i +ee p    p d++d d +d 
  MMETSP0890-20130614|30569_1  83 EFKVPLQTFLQGYRANEGAKRKsKQSSPKASTTTKKS--KKQSQTQNEEEEDFNDQEENQAKPMQIDAEEAPAAVAPEDDEDVDDDDE 168
                  4566666666666555554443134444444444444..3333344444444444444556666666788888888888777777775 PP

>> PF10310.4  Protein of unknown function (DUF2413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.7   7.8e-05     0.089      20     115 ..      58     150 ..      26     164 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.8e-05
    PF10310.4  20 kskaskkstkkdediLefLdeleksekakkkkkaeeaekaetprvekkkskkkesekaskeekeakprkseeseesseekskapeteseeeeeeee 115
                  + +++k++t ++ di+++  +le +e + + +   +  +  +++ +k+ksk+++++++++++k++k+++++++ee++ ++++++++++ +   +ee
  MMETSP0890-20130614|30569_1  58 HCHEKKRQTVSAVDIMQAVSDLEMEEFKVPLQTFLQGYR--ANEGAKRKSKQSSPKASTTTKKSKKQSQTQNEEEEDFNDQEENQAKPMQI-DAEE 150
                  5678899999**************888888764333333..23324444444444444333333333333333333333333333333333.2222 PP

>> PF10344.4  Mitochondrial protein from FMP27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.3   0.00022      0.25     205     270 ..      72     140 ..      50     151 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
    PF10344.4 205 LrdlelsLklgrlniplddliklvkllkkskeekdeeeekneerdeksled.qseeleep..kdekekq 270
                  + ++ ++L + ++++pl ++   ++ ++  k +++++++k++++ +ks ++ q++++ee+  +d++e+q
  MMETSP0890-20130614|30569_1  72 IMQAVSDLEMEEFKVPLQTFLQGYRANEGAKRKSKQSSPKASTTTKKSKKQsQTQNEEEEdfNDQEENQ 140
                  5688999******************99999999999999998888887654155555555785555444 PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  10.6   0.00024      0.27      57     129 ..      99     174 ..      52     181 .] 0.57

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00024
    PF03286.9  57 kttkrk..pvkkkkskkkekekeeeeekkeeededkdteenendddekeeskdskesasaneqs.deddedeideS 129
                  + +krk  +   k s+ ++k k++++ ++eee++ +d+een++++ + ++++ +   a +  ++ d+dded +d+ 
  MMETSP0890-20130614|30569_1  99 EGAKRKskQSSPKASTTTKKSKKQSQTQNEEEEDFNDQEENQAKPMQIDAEEAPAAVAPEDDEDvDDDDEDMVDDE 174
                  3344442233333333344444444445555555556677777676666666666555555555445555555554 PP

>> PF03666.8  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.0   0.00039      0.44      46     118 ..      98     170 ..      86     171 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00039
    PF03666.8  46 kkkkkkqkkskrsksesakarketeskdasddreesaeeeessskssakseveslakseeeseeesedkkksm 118
                  ++  k+++k+++ k ++++++++++s+++++++e  +++ee+++k  +  + e  a  ++e +e+++d+ ++m
  MMETSP0890-20130614|30569_1  98 NEGAKRKSKQSSPKASTTTKKSKKQSQTQNEEEEDFNDQEENQAKPMQIDAEEAPAAVAPEDDEDVDDDDEDM 170
                  4444444444445555555577778999999999999999999999999999999999999999999998887 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  12.9   0.00044       0.5      65     148 ..      97     175 ..      56     181 .] 0.44

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00044
    PF04889.7  65 eaEaaakakkekskkkralenakkeeeleaakeaeededeekeakrkkkleeareidaddsdkseee...sdesdddsdddddeDet 148
                  ++E a++++k +s+ k +++ +k++++ ++++e+eed ++++     +++++  +ida+++ ++      +d +ddd+d    +De+
  MMETSP0890-20130614|30569_1  97 ANEGAKRKSK-QSSPKASTTTKKSKKQSQTQNEEEEDFNDQE-----ENQAKPMQIDAEEAPAAVAPeddEDVDDDDED--MVDDED 175
                  3444444444.3444444444444444333333333322222.....23344444444443322222111111122222..111111 PP

>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.0    0.0083       9.5     169     246 ..      99     180 ..      88     181 .] 0.57

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0083
    PF09849.4 169 eeiveaike..sspwggagdasasalaedagennfgdddsdaa.glgdqgsngddddagfdDsgfddddldagdd.dgdddd 246
                  e +  ++k+   ++  +++++++++++++++e++f+d+++++a +++ +++++  + a  dD++ dddd d+ dd d++ddd
  MMETSP0890-20130614|30569_1  99 EGAKRKSKQssPKASTTTKKSKKQSQTQNEEEEDFNDQEENQAkPMQIDAEEAPAAVAPEDDEDVDDDDEDMVDDeDDFDDD 180
                  3444444443233334445555666677788888888888777534444444445666777888888888886666444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1830  (0.13385); expected 273.4 (0.02)
Passed bias filter:                      764  (0.0558806); expected 273.4 (0.02)
Passed Vit filter:                       130  (0.00950848); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.74u 0.47s 00:00:01.21 Elapsed: 00:00:00.80
# Mc/sec: 542.18
//
Query:       MMETSP0890-20130614|30572_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.1   0.0    3.4e-06   27.0   0.0    1.6  1  PF12697.2  Alpha/beta hydrolase family
     0.0011   18.4   3.6     0.0051   16.2   1.3    2.6  2  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.029   14.0   0.0       0.08   12.5   0.0    1.8  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.4e-10   3.4e-06      21     197 ..     181     394 ..     164     414 .. 0.62

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7.4e-10
                  H.TTTSEEEEE-----------S...........S--HHHHHHHHHHHHHH--.........--E.EEE--------HHHHHH----.EEEEEEE------STT......................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHH CS
    PF12697.2  21 L.aagyrvvapDlpGhGrSdrppd........ydpdtledlaadlaalldalgl........rpv.vlvGHSlGgavalaaaarrpdlvrglvlidppgplpas......................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearr 197
                  L ++ y++v++++ G G S  p+         ++  t++  + +   +     +         p+  + G+S+G++++ ++a+  pdl   ++++++ g+++                                        +   a++ +      ++   l d+  +++++ f +d++++l++     +++++++  +++  +++l+++++ +l++  + D +  +ee++ 
  MMETSP0890-20130614|30572_1 181 LdSDEYTIVVFNMLGNGVSFSPSIkgselsqyPQTITMAHNVLCQKFA-----IkhdkqlrcMPLdLVYGYSMGAMQGFEWARTTPDLPNLIAVCGASGCNDYNrvflesliatldqpysdsqsklkafaaiyagygvgydyY---AHKVW----REHGFHNLDDFLQNSYHASFRDDDPRDLLA-----MLRTWHS--TRPFSPDDLRAISTRCLLLPVTTDSYFRVEEIQN 394
                  645799***********9998773233332211112222222222223.....2333224333444678******************99999999988866665666666666666665555555555544444444432221...11111....123333445555555555555555555553.....4555555..777777*************999998888665544 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.076   3.5e+02     146     197 ..      44      96 ..      29     107 .. 0.85
   2 !   16.2   1.3   1.1e-06    0.0051      48     144 ..     243     379 ..     186     405 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.076
                  ECCHCCHCCEC.HCHHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHHH CS
   PF00561.15 146 getraldgkll.aalgrdlvwdvtetlktilvptlvisgtdDplvpykasekl 197
                  +++++++ ++l aa ++  v++++e +++ l + l+ s++ + l++++ + + 
  MMETSP0890-20130614|30572_1  44 TQDESKYRHFLiAAPSTRFVEPTIELISQHLGKALMNSIDTTTLTKNDSILDA 96 
                  56888999999*****************************9999999988774 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.1e-06
                  EEE-B---HHHHHHHHHCGGGEEEEEEESB--......................................HHSHCSHSTTCHC...HHHHHHHHCCHHHHHHHHHHH.CSCCCHHHCHHHHHHCHCCCCCHHHHHHHHH CS
   PF00561.15  48 lvGhSmGGmialayaaeypdrvkamvllgtva......................................vlsdglssdvlnr...gstltlladnvagrlskgikp.lqgdasvqaqsllrpqvtdflkrfdansyar 144
                  + G+SmG+m+++++a   pd    ++ +g++                                       v +d   + v+ +   +++ ++l +++++ +++++   l+++ +   ++  rp++ d l++++++++  
  MMETSP0890-20130614|30572_1 243 VYGYSMGAMQGFEWARTTPDLPNLIAVCGASGcndynrvflesliatldqpysdsqsklkafaaiyagygVGYDYYAHKVWREhgfHNLDDFLQNSYHASFRDDDPRdLLAMLR--TWHSTRPFSPDDLRAISTRCLLL 379
                  78******************7777778999889999999999888888888888888888888888888866666666666667777788888888887444443321334444..77777888887777777777665 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05      0.08      19     123 ..     178     395 ..     166     414 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
    PF12695.2  19 aealakrgfavvavdlpghgasegaa..............aakrvl...........aadlldleri.ilvGhSlGGgvalelag.....................................................................................rd.drvkglvllapf.....pdgedlakltlpvllihGtrDgvvppeeaekl 123
                    +l ++ + +v++++ g+g s + +                   +            +++l+  ++  ++G S+G++ ++e a+                                                                                     rd d+ + l +l ++     ++ +dl++++  +ll+  t D +  +ee+++ 
  MMETSP0890-20130614|30572_1 178 GTTLDSDEYTIVVFNMLGNGVSFSPSikgselsqypqtitM----AhnvlcqkfaikHDKQLRCMPLdLVYGYSMGAMQGFEWARttpdlpnliavcgasgcndynrvflesliatldqpysdsqsklkafaaiyagygvgydyyahkvwrehgfhnlddflqnsyhasfRDdDPRDLLAMLRTWhstrpFSPDDLRAISTRCLLLPVTTDSYFRVEEIQNH 395
                  56788999*************96666656666665655553....1444588887763334444444489***************77777777777777777777777777777777777777777777777777777777777777777777777777777777777774424444444444444555444677777777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.71
# Mc/sec: 1539.07
//
Query:       MMETSP0890-20130614|30580_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   14.3   0.0       0.07   13.1   0.0    1.7  1  PF00280.13 Potato inhibitor I family


Domain annotation for each model (and alignments):
>> PF00280.13  Potato inhibitor I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-06      0.07       4      34 ..       4      34 ..       2      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.1e-06
                 -GGG---BHHHHHHHHHHH-TTSEEEEEE-- CS
   PF00280.13  4 WPElvGvkgeeAkeiIekenpdvtvvvlpeg 34
                  PEl+G ++   +     enpd+  vvlp+ 
  MMETSP0890-20130614|30580_1  4 HPELLGXNAAAIRGALRAENPDLLTVVLPQS 34
                 6***************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 432.89
//
Query:       MMETSP0890-20130614|30587_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 788.80
//
Query:       MMETSP0890-20130614|30613_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.6    5.9  11.0        3.1    5.7   7.6    1.1  1  PF03154.10 Atrophin-1 family


Domain annotation for each model (and alignments):
>> PF03154.10  Atrophin-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.6   0.00022       3.1     577     634 ..      50     114 ..      38     140 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00022
   PF03154.10 577 ssklakkreeaveka...kreaeqkareererekekek....erererereaeraakasssshes 634
                   s+l +kr+   eka   +r ae ka+ e  r +  e+    + e++  re er+ +   +  es
  MMETSP0890-20130614|30613_1  50 RSRLQRKRDSKREKAagiRRAAEAKAKSEELRMRRVEQrrkaKAEKKARREVERNMRGGIAQVES 114
                  699**********987778*******999877765555222355666677778877766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1243  (0.0909157); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 571.70
//
Query:       MMETSP0890-20130614|30619_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   89.4   0.0    1.7e-25   89.3   0.0    1.0  1  PF04412.8  Protein of unknown function (DUF521)
    0.00098   18.5   0.0      0.099   12.1   0.0    2.2  2  PF12289.3  Rotavirus VP1 structural protein
  ------ inclusion threshold ------
      0.085   11.9   0.0       0.11   11.5   0.0    1.1  1  PF02602.10 Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> PF04412.8  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   3.7e-29   1.7e-25     286     399 ..       4     119 ..       1     120 [. 0.91

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 3.7e-29
    PF04412.8 286 kkeevdlvvlGcPhlsleeleelaellkgrkkkvsvelvvttsravlskaekaglvkkleaa.Gvkvltdt..CmvvspvlekaakkvmtnSgKaahylpglvg.vevalgsledcie 399
                  ++++vdlv++G+Ph+s++ele l++llk++k +++ +l+vt++r+vl++ae+ gl++ l ++ G ++++dt  Cm+ +p+++++a+ ++tnS+K+ahy+pglv+ +++++ sl+ c++
  MMETSP0890-20130614|30619_1   4 TEDNVDLVAVGNPHASVQELEMLYALLKNQK-RLKSKLIVTIGRDVLRQAEQHGLINNLLQFdGFQLIQDTcwCMLNYPIVPHDAS-IVTNSAKYAHYAPGLVRpRRIQISSLSGCVD 119
                  6889**************************9.9***********************998776599******999999999888887.**************99735789999999997 PP

>> PF12289.3  Rotavirus VP1 structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0     0.006        27      29      52 .]      25      49 ..      20      49 .. 0.82
   2 !   12.1   0.0   2.2e-05     0.099       6      31 ..      90     115 ..      86     124 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.006
    PF12289.3 29 illsfLqkPvsFksekvvtin.DvL 52
                 +l ++L++    ks+ +vti  DvL
  MMETSP0890-20130614|30619_1 25 MLYALLKNQKRLKSKLIVTIGrDVL 49
                 678999**************43665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.2e-05
    PF12289.3   6 ltEkAkLnsYAPvaLEkRRdqisill 31 
                  +t+ Ak   YAP  +  RR qis l 
  MMETSP0890-20130614|30619_1  90 VTNSAKYAHYAPGLVRPRRIQISSLS 115
                  89*********************885 PP

>> PF02602.10  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.11     175     217 ..      18      59 ..       6      63 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.5e-05
   PF02602.10 175 tSpsavrsllellkdegellknvkvaaiGptTaealeklglkv 217
                  +S ++ + l++llk++ + lk+  +++iG+ + +++e++gl +
  MMETSP0890-20130614|30619_1  18 ASVQELEMLYALLKNQ-KRLKSKLIVTIGRDVLRQAEQHGLIN 59 
                  6778899999999985.99*********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 539.18
//
Query:       MMETSP0890-20130614|30622_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.67
# Mc/sec: 1051.54
//
Query:       MMETSP0890-20130614|30637_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 606.67
//
Query:       MMETSP0890-20130614|30657_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.4e-126  420.9   0.0   3.9e-126  420.7   0.0    1.0  1  PF00275.15 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
  ------ inclusion threshold ------
       0.16   11.9   1.8        3.6    7.6   0.0    3.0  3  PF06076.7  Orthopoxvirus F14 protein


Domain annotation for each model (and alignments):
>> PF00275.15  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.7   0.0  5.8e-130  3.9e-126       2     419 .]      37     470 ..      36     470 .. 0.93

  Alignments for each domain:
  == domain 1    score: 420.7 bits;  conditional E-value: 5.8e-130
                  E-SS---EEEE----HHHHHHHHHHHGGGCS-EEEES---SHHHHHHHHHHHH--.EEEEEET-TEEEEEETT..--BB-H-HHCC-GGGGGGHHHHHHHHT-E---EEEE--GGG-----HHHHHHHHH---EEEE..-...-EEEEECEES....SS---EEEE-SS-GGGTHHHHHHHHTT-SS...EEEEET.-TTHHHHHHHHHHHHH---EEEE.-STC.EEEEE---S.-B-....-.EEE----TTTHHHHHHHHHCT---EEEES--GGGSHHH..HHHHHHHH..-EEEEETTCEEEEE--...S--BEEEEET-S--HHHHHHHHHHHHHHCCEB--EEEE-SSSTTHHHHHHHHHC----EEE-----E.EEEEE...----EEE-TTSCCCCHHHHH--..-----EEEETCHHCCGT-TTHHHHH CS
   PF00275.15   2 egisrlegevkvpGsksisnralllAaLaegettitnlLdseDvrlmlealraLGaevieleeekevvivegeggsfeapeelvldlgnsgtalrlLlgllalvsgevvLtGdesigeRPidrlldaLkqlGaeieveeg...egyaplkvkg....lklkgveidlsvsSqfvtsllllaallaeg...ttiien.lasepeiddtlkmlkkfGakietsgtet.sikvkGkqk.klp....gveylvegDassAayflaaAaitggevlvenvginslqGdiealdevlekmgaeitqeedssivvgee..klklkdvdietapdeaptiavlaafaegtstiegiselrvketdrlaamateLrklGaeveeeedgliiitaev..qlkgaevdtykDhRiamafalaglvlegeeviiddiecidktfpefvekl 419
                   +i++++g v++pGsks+snrall+AaL eget ++nlL+s+D+++mleal aLG+ev +  +e+ + +v+++g+ +++  e  l+lgn+gta+r+L+++la  +g++vL+G ++++eRPi++l+daL+qlG ++ + e+   +g++p+ +k+      +++ ++++++sSqf+++lll+++lla+    t+ i++ l+s+p++  t++++++fG++++ ++++  s+ vk +q+  ++    + +y vegDassA+yflaa+a+tgg v+v ++g +s+qGd+++++ vl +mga++t e+++++v++    +l+++dvd  ++pd+a+t+a +a++aeg +ti+++ ++rvket+r++a+++e +klGa+v e++  ++i++++       +e++ty+DhRiam fala+  ++g  v+i d++c++ktfp+++++l
  MMETSP0890-20130614|30657_1  37 SPIEKVQGVVRLPGSKSLSNRALLIAALCEGETIVENLLESDDTERMLEALAALGVEVDRQ-DEGRTAVVKSTGKFYDTT-ENDLFLGNAGTAMRPLAAVLAASNGDYVLDGTPRMRERPIADLIDALQQLGCDVTCTENpgfGGCPPVYIKKsssiIDGGSCQVSGKTSSQFLSALLLASPLLAKTkdvTINIIDeLISAPYVLLTIDLMRRFGVDVTYDSETMrSFIVKSGQRyDSHtpllNGRYFVEGDASSASYFLAAGAMTGGPVTVIGCGSESTQGDVRFAQ-VLAQMGATVTMEPTNITVSRDLsqPLRGVDVDCLDIPDAAMTLASVALVAEGPTTIRNVGSWRVKETERMKAIVAETSKLGAHVFEGDTHCVITPPSEnkPNPNVEIETYDDHRIAMTFALAA--CAGVAVTILDPKCTSKTFPTYFDEL 470
                  5789***************************************************999887.679999999988888888.69********************************************************9555679******999999***************************999887878889**********************97654349*****99875432222459******************************************.*************998888887899**************************************************************977776777656656679******************..88889*****************987 PP

>> PF06076.7  Orthopoxvirus F14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.031   2.1e+02      32      54 ..      75      97 ..      59     104 .. 0.83
   2 ?    7.6   0.0   0.00052       3.6      34      56 ..     152     174 ..     142     177 .. 0.87
   3 ?   -1.4   0.0      0.33   2.2e+03      26      55 ..     222     256 ..     218     259 .. 0.54

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.031
    PF06076.7 32 idedditellniltelGcdvdfd 54
                 ++ dd   +l+ l+ lG +vd +
  MMETSP0890-20130614|30657_1 75 LESDDTERMLEALAALGVEVDRQ 97
                 467899999***********964 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00052
    PF06076.7  34 edditellniltelGcdvdfded 56 
                  e  i +l++ l +lGcdv   e+
  MMETSP0890-20130614|30657_1 152 ERPIADLIDALQQLGCDVTCTEN 174
                  77899*************98886 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.33
    PF06076.7  26 sdtdieideddite...ll..niltelGcdvdfde 55 
                   d+ i+i ++ i     ll  +++  +G dv +d 
  MMETSP0890-20130614|30657_1 222 KDVTINIIDELISApyvLLtiDLMRRFGVDVTYDS 256
                  56666554444432111331145667888988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.80
# Mc/sec: 1425.83
//
Query:       MMETSP0890-20130614|30667_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0038   16.9   1.1       0.91    9.7   0.1    2.8  2  PF02524.9  KID repeat
  ------ inclusion threshold ------
      0.037   12.8   5.3      0.042   12.6   3.7    1.1  1  PF10475.4  Protein of unknown function N-terminal domain (DUF2450)
      0.046   13.5   8.5      0.049   13.4   5.9    1.1  1  PF09074.5  Mer2
      0.098   12.1   3.7       0.19   11.1   2.5    1.6  1  PF04253.10 Transferrin receptor-like dimerisation domain
       0.15   11.9  10.4       0.17   11.7   4.4    2.3  2  PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus
       0.15   11.9   7.2       0.22   11.4   5.0    1.4  1  PF10280.4  Mediator complex protein
       0.21   11.4   0.9       0.32   10.8   0.3    1.6  2  PF07125.6  Protein of unknown function (DUF1378)
       0.37   10.1   3.6        0.4   10.0   2.5    1.1  1  PF00761.15 Polyomavirus coat protein
       0.44    9.8   7.0       0.48    9.6   4.8    1.1  1  PF04799.8  fzo-like conserved region
       0.58    9.6  16.3       0.66    9.4  11.3    1.0  1  PF03962.10 Mnd1 family
       0.71    9.5   6.1          2    8.1   4.2    1.7  1  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
        0.8    9.6   6.9       0.56   10.1   2.4    2.1  2  PF08891.6  YfcL protein
       0.84    9.7   8.8        1.2    9.2   6.1    1.2  1  PF11871.3  Domain of unknown function (DUF3391)
          1    9.0   7.1        1.2    8.8   4.9    1.0  1  PF10173.4  Mitochondrial K+-H+ exchange-related
        1.2    7.6  12.4        1.3    7.5   8.6    1.0  1  PF11917.3  Protein of unknown function (DUF3435)
        1.2    9.0  15.0        1.3    8.9  10.4    1.1  1  PF13892.1  DNA-binding domain
        1.6    8.1   7.7        1.7    8.0   5.3    1.2  1  PF12999.2  Glucosidase II beta subunit-like
        2.1    6.7   6.7        2.3    6.6   4.6    1.0  1  PF12097.3  Protein of unknown function (DUF3573)
        2.3    5.4   6.5        2.4    5.4   4.5    1.0  1  PF05478.6  Prominin
        2.5    7.9  14.3        3.1    7.7   9.9    1.2  1  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
          3    6.8  11.8        3.3    6.6   8.2    1.1  1  PF07246.6  Phlebovirus nonstructural protein NS-M
        3.2    7.9   6.4          4    7.6   4.5    1.3  1  PF10956.3  Protein of unknown function (DUF2756)
        3.4    7.7  12.0         13    5.9   8.3    1.9  1  PF05837.7  Centromere protein H (CENP-H)
          4    6.2   8.6        4.2    6.2   5.9    1.2  1  PF11262.3  Transcription factor/nuclear export subunit protein 2
        4.4    5.7   6.9          5    5.5   4.8    1.0  1  PF11744.3  Aluminium activated malate transporter
        4.8    5.8  14.1          6    5.5   9.8    1.2  1  PF14362.1  Domain of unknown function (DUF4407)
        5.9    6.5  14.1        6.5    6.4   9.7    1.1  1  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
        6.7    5.6  12.6        6.8    5.6   8.7    1.0  1  PF02601.10 Exonuclease VII, large subunit
        7.6    6.3  21.1        9.1    6.0  14.6    1.2  1  PF03938.9  Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> PF02524.9  KID repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0019      0.91       2      10 ..      39      47 ..      38      48 .. 0.92
   2 ?    5.3   0.0     0.059        28       2      10 ..      50      58 ..      49      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0019
    PF02524.9  2 IDnVekeLd 10
                 I++Ve+eL+
  MMETSP0890-20130614|30667_1 39 IKKVENELQ 47
                 99******9 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.059
    PF02524.9  2 IDnVekeLd 10
                 I++ e+eL+
  MMETSP0890-20130614|30667_1 50 IKKAENELQ 58
                 899*****9 PP

>> PF10475.4  Protein of unknown function N-terminal domain (DUF2450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.7   8.8e-05     0.042      34      89 ..       7      63 ..       3      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.8e-05
    PF10475.4 34 ekeaeklkeqhdvvskklsqlimekreefvkgmeeie.eiekeLkeaavickngRra 89
                 +++a+++++ +d +++++ ++  ek+++f+++++++e e++ ++k+a ++++++R+a
  MMETSP0890-20130614|30667_1  7 QEHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVEnELQTQIKKAENELQSSRKA 63
                 5678899*****************************648****************97 PP

>> PF09074.5  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   5.9    0.0001     0.049      55     118 ..       8      72 ..       2      91 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.0001
    PF09074.5  55 enskeLlkvveqlnekLesqeaskneeikklikklgaqlnnqlkevvkaleeklktink.nsalk 118
                  e   ++ k+   +  + e+  a k+ +++ +ikk++++l+ q+k+  + l++++k+ ++  +a +
  MMETSP0890-20130614|30667_1   8 EHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENeIRATR 72 
                  55667778888888899888999********************************9998433333 PP

>> PF04253.10  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.5   0.00041      0.19      78     117 ..       6      48 ..       2      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00041
                  BTT---B----HHHHTTGGG-SS...---HHHHHHHHHHHHHH CS
   PF04253.10  78 nsydsatfpgirDaledadssss...wdeaqrqlslvakalqg 117
                  +++ +at++ ++D+++++ +++    ++++q q++ v++ lq+
  MMETSP0890-20130614|30667_1   6 KQEHAATISKLQDTIKRQVEDRAaekEAQFQAQIKKVENELQT 48 
                  455569***********99777789988899999999888875 PP

>> PF07334.8  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.1     0.002      0.94       6      28 ..      29      51 ..      24      52 .. 0.87
   2 ?   11.7   4.4   0.00037      0.17       4      42 ..      38      78 ..      37      92 .] 0.74

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.002
    PF07334.8  6 qkenirLkeeiqkLeaELQelkr 28
                 ++++++ + +i+k+e ELQ + +
  MMETSP0890-20130614|30667_1 29 AEKEAQFQAQIKKVENELQTQIK 51
                 68999**************8766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00037
    PF07334.8  4 eiqkenirLkeeiqkLeaELQelkr..efqikediPetKik 42
                 +i+k + +L+++i+k e ELQ+ ++  e  i+    e+K+ 
  MMETSP0890-20130614|30667_1 38 QIKKVENELQTQIKKAENELQSSRKaqENEIRATRHEAKVA 78
                 6888999**************98762255677777777765 PP

>> PF10280.4  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.0   0.00047      0.22      28      85 ..      15      66 ..       2      91 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00047
                 H---TT--...-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---........ CS
    PF10280.4 28 eLssekelsqdqeskkeafeqasseFlktLdsvdkeLrrqIkaLeeagiiqlrekssy 85
                 +L+   +  + +++ +++  ++  +F +++++v++eL  qIk  e     ++r+++++
  MMETSP0890-20130614|30667_1 15 KLQ---D--TIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENE-LQSSRKAQEN 66
                 333...2..23567888999999********************9874.3334444444 PP

>> PF07125.6  Protein of unknown function (DUF1378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00067      0.32      28      48 ..      16      36 ..      12      47 .. 0.81
   2 ?   -1.9   0.0       6.2   2.9e+03      29      43 ..      43      57 ..      38      66 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00067
    PF07125.6 28 iRnyiRrkiDkaaaekisasq 48
                 + + i+r+++++aaek ++ q
  MMETSP0890-20130614|30667_1 16 LQDTIKRQVEDRAAEKEAQFQ 36
                 6799************76655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 6.2
    PF07125.6 29 RnyiRrkiDkaaaek 43
                  n +  +i ka  e 
  MMETSP0890-20130614|30667_1 43 ENELQTQIKKAENEL 57
                 566667777665553 PP

>> PF00761.15  Polyomavirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.5   0.00086       0.4     219     271 ..      11      63 ..       3      80 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00086
   PF00761.15 219 seLpainpaqvRqvarregeevalgesqresideadseqekkqrkelkkpevq 271
                  ++++ ++ + +Rqv+ r  e+ a+ ++q ++++++ ++q kk+++el++  + 
  MMETSP0890-20130614|30667_1  11 ATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKA 63 
                  678889999**************************************987554 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.8     0.001      0.48      96     154 ..      17      76 ..       2      88 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.001
    PF04799.8  96 ssncshqvqqelastfarleqqvdvtkkdleeeikelekeiekletiqs.kakllrnkan 154
                     +++qv+   a+  a++++q+++ +++l+ +ik+ e+e+++  + q+ ++++ r+ a+
  MMETSP0890-20130614|30667_1  17 QDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQEnEIRATRHEAK 76 
                  455677888888888888888888888888888888888888776665414566666665 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  11.3    0.0014      0.66      76     153 ..       4      84 ..       1      88 [. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0014
   PF03962.10  76 keleelkqrikelqaeiekekkkreet...eereelleelkeleeelkklkkeleklakldpekveklkeetevakesanr 153
                   + +e  ++i++lq+ i+ + + r  +   + +++  +  +el++++kk ++el++ +k  +++++ +++e +va ++an 
  MMETSP0890-20130614|30667_1   4 TQKQEHAATISKLQDTIKRQVEDRAAEkeaQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIRATRHEAKVATDDANI 84 
                  566777788888888888887776666332334444455579***********************************9995 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.2    0.0042         2      28      83 ..       5      57 ..       1      84 [. 0.49

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0042
    PF04513.7 28 qnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtl 83
                 q+ + +a +++l d+i++q+++ +++ ++   +++++++++ ++L++++++ +++l
  MMETSP0890-20130614|30667_1  5 QKQEHAATISKLQDTIKRQVEDRAAEKEA---QFQAQIKKVENELQTQIKKAENEL 57
                 44444555555555555555553333222...333344443333333333322222 PP

>> PF08891.6  YfcL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.8      0.02       9.5      39      84 ..       3      48 ..       1      49 [. 0.89
   2 ?   10.1   2.4    0.0012      0.56      38      72 ..      28      62 ..      23      71 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.02
    PF08891.6 39 aeleeegetslealkekveeslekAksELspaDqalVenlweqLqa 84
                 a  ++e+ +++++l++++++ +e+ ++E + + qa+++++ ++Lq+
  MMETSP0890-20130614|30667_1  3 ATQKQEHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQT 48
                 566788899******************************9999987 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0012
    PF08891.6 38 vaeleeegetslealkekveeslekAksELspaDq 72
                 +ae e++ +++++++++++++ ++kA++EL+++ +
  MMETSP0890-20130614|30667_1 28 AAEKEAQFQAQIKKVENELQTQIKKAENELQSSRK 62
                 6788999999********************98655 PP

>> PF11871.3  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.1    0.0026       1.2      68     126 ..      22      82 ..       3      83 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0026
    PF11871.3  68 eeedsikqlrekakpssk..akvsverelkrakklyqeakrlvrklfedaragkaidvepa 126
                  +++++++ ++e +++++     +++++++k+a++++q++++++++ ++ +r+   +++++a
  MMETSP0890-20130614|30667_1  22 RQVEDRAAEKEAQFQAQIkkVENELQTQIKKAENELQSSRKAQENEIRATRHEAKVATDDA 82 
                  22333333333333322245788999**************************999999887 PP

>> PF10173.4  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.9    0.0025       1.2      21      97 ..       8      84 ..       2      91 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0025
    PF10173.4 21 sssaeeslskeskkesledkitkkaaktwaklekaekgwkkkvvslgeklldripyeEnaLksipseskllreekee 97
                 + +a+ s+ + + k+++ed++++k a+  a+++k e++++ ++++  ++l ++ + +En +++   e+k+ + +++ 
  MMETSP0890-20130614|30667_1  8 EHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIRATRHEAKVATDDANI 84
                 33333555666778889999999999999999999999999999999999999999999988887777766555544 PP

>> PF11917.3  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.6    0.0027       1.3     276     347 ..       2      74 ..       1      87 [. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0027
    PF11917.3 276 Ltdeqkasveedpelqe.lkrkreelkkeleakygqvakakgtelyeelekakrevrnerqrlrrelkkkire 347
                  L++++++ +    +lq  +kr++e++++e ea+++   k+ ++el+ +++ka++e++++r+++ +e++   +e
  MMETSP0890-20130614|30667_1   2 LATQKQEHAATISKLQDtIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIRATRHE 74 
                  55666666667777765156778899999999******************************99998876554 PP

>> PF13892.1  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  10.4    0.0028       1.3      33     102 ..       5      74 ..       1      92 [] 0.70

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0028
    PF13892.1  33 kklsnakklaqlcarearrkqsksqkivkdiqlrakrlvremllfwkknekeerelrkkaekeaaeqakk 102
                  +k+++a  +++l     r+ + ++     ++q++ k++  e+++  kk e e ++ rk +e e    + +
  MMETSP0890-20130614|30667_1   5 QKQEHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIRATRHE 74 
                  5556666677777777777888888888899****************************99654433322 PP

>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.3    0.0036       1.7     112     164 ..      21      74 ..       5      88 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0036
    PF12999.2 112 lgkcenkcaeiarkfeelleeankkvkkglkike.elllaakkkldelkkklke 164
                  + + e++ ae+ ++f+++ +++++++++ +k  e el+   k +++e+++ ++e
  MMETSP0890-20130614|30667_1  21 KRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAEnELQSSRKAQENEIRATRHE 74 
                  445677777777777777777777777777654403333334444555554444 PP

>> PF12097.3  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.6    0.0048       2.3      48     119 ..      10      85 ..       2      91 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0048
    PF12097.3  48 qkqikelqaqinqleeqkksnessefatysskveddtlvgvget....kklseaqinnklasdiisnieadssiin 119
                  +  i +lq  i++  e + ++++++f +   kve++  ++++++    ++  +aq n+  a++  +++ +d+  i+
  MMETSP0890-20130614|30667_1  10 AATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAenelQSSRKAQENEIRATRHEAKVATDDANIK 85 
                  456888999998777777999999****99***9996555554400003444455555556666666666665555 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.5    0.0051       2.4     322     384 ..      12      74 ..       2      91 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0051
    PF05478.6 322 ilenleevveadlskvvqeglstleeipskvkeqtssvvqevkkaldslgteiksvaeelpkq 384
                   +++l++ ++ ++++ ++e   +++   +kv+++++++++++ ++l+s++++ ++  +  + +
  MMETSP0890-20130614|30667_1  12 TISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIRATRHE 74 
                  233444444444444444444444444444444444444444444444444433333333333 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.9    0.0065       3.1      35     107 ..       5      74 ..       1      91 [. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0065
    PF13094.1  35 qlaaelksielLqeeirreeaelekdeekleeLeknakalererkeesknlhpvlqelesevleenalaeked 107
                  q +  + +i++Lq  i+r+ + ++ ++e   ++++++k+ e+e+ ++ k+++  lq +++  ++e ++a  ++
  MMETSP0890-20130614|30667_1   5 QKQEHAATISKLQDTIKRQVEDRAAEKE--AQFQAQIKKVENELQTQIKKAENELQSSRKAQENE-IRATRHE 74 
                  4455567899**********99999666..69******************999998888877776.5555444 PP

>> PF07246.6  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.2    0.0071       3.3     144     198 ..      22      74 ..       5      91 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0071
    PF07246.6 144 eklkkkaeekdktisrktkesEediknqvlhseieqlknelqkkRndikrgqekr 198
                  +++ ++a ek++  + + k+ E++ ++q+ + e e+     + + n+  r+ +++
  MMETSP0890-20130614|30667_1  22 RQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSS-RKAQENE-IRATRHE 74 
                  689999*****************9999987776554322.2333344.3444433 PP

>> PF10956.3  Protein of unknown function (DUF2756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.5    0.0085         4      37      90 ..      14      67 ..       4      82 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0085
    PF10956.3 37 qrlqtqmqtqqlqqkgmlkqqlktqtrlqqqhlqtqlnnnaqrvqqgqpgelna 90
                  +lq  ++ q   + +  + q+++q +  +++lqtq+++ ++ +q ++  + n 
  MMETSP0890-20130614|30667_1 14 SKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENE 67
                 578999999999999999999****************99999888887666653 PP

>> PF05837.7  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.3     0.027        13      30      75 ..       6      54 ..       2      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.027
    PF05837.7 30 kqknrelvrellelkkkkesdre...deelkeklekleaelkkskkkwe 75
                 kq+ ++ +++l+++ k++ +dr    +++ +++++k+e+el++++kk+e
  MMETSP0890-20130614|30667_1  6 KQEHAATISKLQDTIKRQVEDRAaekEAQFQAQIKKVENELQTQIKKAE 54
                 5666677777777777777777777778888999999999999988865 PP

>> PF11262.3  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.9    0.0089       4.2      23      79 ..       3      56 ..       1      88 [. 0.80

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0089
    PF11262.3 23 yvpkeqYdkeiekleseikeskkakiekkkrelkriknrikkLeeekkehiehteki 79
                 ++ k+   ++i+kl++ ik+   +  ++  ++ ++ +++ikk+e+e +++i+  e+ 
  MMETSP0890-20130614|30667_1  3 ATQKQEHAATISKLQDTIKR---QVEDRAAEKEAQFQAQIKKVENELQTQIKKAENE 56
                 577888899999***99999...6677788888889999999999999998776654 PP

>> PF11744.3  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.8     0.011         5     267     335 ..       8      79 ..       2      90 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.011
    PF11744.3 267 qcaytvealhgclnsei.qapeelrkkfkeelqrvslesakvlrelaesikkmkklssvee..llkevkvaa 335
                  + a t+  l+  ++ ++ + + e +++f++++++v +e    +++ +++++  +k ++ e+  + +e+kva+
  MMETSP0890-20130614|30667_1   8 EHAATISKLQDTIKRQVeDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIraTRHEAKVAT 79 
                  457778888888854441566788888888888888888888888888888888877743300333344444 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.8     0.013         6     108     159 ..      18      76 ..       5      91 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.013
    PF14362.1 108 keIdtelkekqqeeqaaaqaqvaa.......slsaklaaltaeiaalqaeldeaqaevn 159
                  + I+++++++++e++a++qaq+++       ++++++++l++ ++a ++e+++ + e +
  MMETSP0890-20130614|30667_1  18 DTIKRQVEDRAAEKEAQFQAQIKKvenelqtQIKKAENELQSSRKAQENEIRATRHEAK 76 
                  44666777777777777777666644433332222223333333333333333222222 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.7     0.014       6.5      93     160 ..      16      83 ..       3      92 .] 0.77

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.014
    PF05279.6  93 aeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevE 160
                   ++  k++ve+ + E++ + + +i + e+e ++++++ ++e + + ++++++ r++ +ea+++ ++++
  MMETSP0890-20130614|30667_1  16 LQDTIKRQVEDRAAEKEAQFQAQIKKVENELQTQIKKAENELQSSRKAQENEIRATRHEAKVATDDAN 83 
                  35678889999999999999999999999999999999999999999999999999999988877754 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.7     0.014       6.8     143     225 ..       4      82 ..       1      92 [] 0.63

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.014
   PF02601.10 143 pnkeelkeklknleqrlsralksklekekaklnllknrltlksrrkplskleqeeerleelkerleksleqllqskesqlekl 225
                  ++k+e  + +++l+++++r+++ ++ +++a+++   ++  ++ +     +++++e++l++++++ e++++   ++++ + +  
  MMETSP0890-20130614|30667_1   4 TQKQEHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQ----TQIKKAENELQSSRKAQENEIRATRHEAKVATDDA 82 
                  56667777777777777777777777777777777777666553....34777777777777777776666666555555553 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  14.6     0.019       9.1      43     110 ..       4      75 ..       1      91 [. 0.59

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.019
    PF03938.9  43 eeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelq....akeqelqayaqqlqaelqaeqqev 110
                  ++++e  +++ + ++ +++++++  +e++ + ++++k+ e+elq    ++e+elq  +++ ++e+ a++ e+
  MMETSP0890-20130614|30667_1   4 TQKQEHAATISKLQDTIKRQVEDRAAEKEAQFQAQIKKVENELQtqikKAENELQSSRKAQENEIRATRHEA 75 
                  456666666667777776666666666555555555555555555555666666666666666666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2941  (0.215111); expected 273.4 (0.02)
Passed bias filter:                     1277  (0.0934026); expected 273.4 (0.02)
Passed Vit filter:                       205  (0.0149941); expected 13.7 (0.001)
Passed Fwd filter:                        42  (0.00307197); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.62u 0.44s 00:00:01.06 Elapsed: 00:00:01.05
# Mc/sec: 209.97
//
Query:       MMETSP0890-20130614|30691_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.09   12.4   0.0       0.24   11.0   0.0    1.7  1  PF00045.14 Hemopexin


Domain annotation for each model (and alignments):
>> PF00045.14  Hemopexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.7e-05      0.24       4      23 ..      20      38 ..      19      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
                 EEEETTTEEEEEETTEEEEE CS
   PF00045.14  4 AfelrdgktYFFkGdkYWrf 23
                 A++   +++Y+F   +YWr 
  MMETSP0890-20130614|30691_1 20 AYTVF-NEIYIFAAAFYWRI 38
                 67788.9************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:01.66
# Mc/sec: 278.61
//
Query:       MMETSP0890-20130614|30693_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-27   93.3   4.2    1.7e-07   31.2   0.0    4.1  4  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
      1e-15   56.7  13.5    1.4e-09   37.1   0.3    3.5  3  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   2.5e-05      0.17      37      51 .]       8      22 ..       3      22 .. 0.88
   2 !   31.2   0.0   2.5e-11   1.7e-07       2      50 ..      26      73 ..      25      74 .. 0.95
   3 !   26.0   0.0     1e-09   7.2e-06       1      49 [.      77     127 ..      77     128 .. 0.95
   4 !   23.5   0.0   6.2e-09   4.2e-05       3      33 ..     133     162 ..     131     163 .] 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.5e-05
                 ---EEE-----EEEE CS
   PF00415.13 37 rvvqvacGgsHtlal 51
                 +vvqva+G++H+l++
  MMETSP0890-20130614|30693_1  8 EVVQVAAGAYHSLFV 22
                 79**********986 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 2.5e-11
                 TEEEEE---------.--------S-EE-GGG--.----EEE-----EEE CS
   PF00415.13  2 GrVysWGrndyGqLGkggseenvlvPvkveglsg.vrvvqvacGgsHtla 50
                 G ++s+G nd GqLG   + +n + P +v +    + + +va+G  Ht++
  MMETSP0890-20130614|30693_1 26 GYLFSCGDNDSGQLG--HNRQNSFAPEQVFLDDQdEQIFSVAAGQAHTVV 73
                 89*************..99*********9999999*************97 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 1e-09
                  TTEEEEE---------...--------S-EE-GGG------EEE-----EE CS
   PF00415.13   1 dGrVysWGrndyGqLG..kggseenvlvPvkveglsgvrvvqvacGgsHtl 49 
                  +G  y+WG n +G LG  ++ ++   l P+k++   g ++ +v++Ggs t+
  MMETSP0890-20130614|30693_1  77 SGAAYAWGSNMRGALGlgIQAHNGLILRPTKLPDNFGGPIEAVVAGGSSTA 127
                  5999*****************************99999*********9987 PP

  == domain 4    score: 23.5 bits;  conditional E-value: 6.2e-09
                  EEEEE---------.--------S-EE-GGG CS
   PF00415.13   3 rVysWGrndyGqLGkggseenvlvPvkvegl 33 
                  +++ +G n++GqLG +g+ ++v  P+k++ l
  MMETSP0890-20130614|30693_1 133 HIFVCGANSDGQLG-LGHFNDVYEPTKLPPL 162
                  68************.************9976 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.3   2.1e-13   1.4e-09       1      30 []       9      38 ..       9      38 .. 0.99
   2 !   20.7   0.7   2.9e-08    0.0002       3      26 ..      63      86 ..      61      89 .. 0.96
   3 !    6.3   0.4   0.00098       6.7      13      30 .]     127     144 ..     116     144 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 2.1e-13
                 --EEE-----EEEE-.---EEEE---TTST CS
    PF13540.1  1 VvsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30
                 Vv+v+aG+yH++++t  G ++++G+N+sGQ
  MMETSP0890-20130614|30693_1  9 VVQVAAGAYHSLFVTKRGYLFSCGDNDSGQ 38
                 8****************************9 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 2.9e-08
                 EEE-----EEEE-.---EEEE--- CS
    PF13540.1  3 svsaGgyHtcaLtsdGaVlcWGsN 26
                 sv+aG  Ht++ t +Ga ++WGsN
  MMETSP0890-20130614|30693_1 63 SVAAGQAHTVVSTVSGAAYAWGSN 86
                 8**********************9 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00098
                  EE-.---EEEE---TTST CS
    PF13540.1  13 aLtsdGaVlcWGsNssGQ 30 
                  aL+  + ++ +G Ns+GQ
  MMETSP0890-20130614|30693_1 127 ALKVKNHIFVCGANSDGQ 144
                  5666778999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.78
# Mc/sec: 500.78
//
Query:       MMETSP0890-20130614|30696_1  [L=830]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   85.0  39.1    0.00015   21.4   0.0   12.3 13  PF00400.27 WD domain, G-beta repeat
    3.9e-05   22.8   0.0       0.44    9.4   0.0    3.8  4  PF03178.10 CPSF A subunit region
    0.00051   19.5   2.7       0.46   10.1   0.1    3.3  3  PF07676.7  WD40-like Beta Propeller Repeat
     0.0019   17.5   0.0     0.0035   16.7   0.0    1.4  1  PF03451.9  HELP motif
     0.0066   14.9   0.0       0.19   10.1   0.0    2.3  2  PF00930.16 Dipeptidyl peptidase IV (DPP IV) N-terminal region


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   7.9e-05      0.22       8      38 ..      55      86 ..      51      87 .. 0.89
   2 ?    3.2   0.0      0.03        82      12      30 ..     243     261 ..     238     272 .. 0.79
   3 !   14.1   0.3   1.1e-05     0.029      10      38 ..     286     316 ..     281     317 .. 0.88
   4 ?   -2.3   0.0       1.6   4.3e+03      30      36 ..     334     340 ..     331     341 .. 0.86
   5 ?   -0.9   0.1      0.57   1.6e+03      28      38 ..     358     368 ..     357     369 .. 0.82
   6 ?    3.8   0.1     0.019        53       7      39 .]     388     417 ..     382     417 .. 0.80
   7 !   21.4   0.0   5.5e-08   0.00015       2      39 .]     420     457 ..     419     457 .. 0.95
   8 !   19.1   0.3   2.9e-07   0.00078      15      39 .]     539     564 ..     536     564 .. 0.93
   9 !    5.9   0.0    0.0041        11      12      27 ..     578     593 ..     577     597 .. 0.85
  10 !   13.1   0.0   2.3e-05     0.062      16      39 .]     634     657 ..     626     657 .. 0.90
  11 ?    4.6   0.0     0.011        30       4      26 ..     664     686 ..     661     688 .. 0.86
  12 ?    0.0   0.0      0.29     8e+02      13      38 ..     746     771 ..     739     772 .. 0.84
  13 !    6.0   0.7    0.0038        11       8      38 ..     786     817 ..     780     818 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.9e-05
                 ESSSSSEEEEEEESSSTEEEEEE.TTSEEEEE CS
   PF00400.27  8 rgHtspVtcvafspdgpllasgS.rDgtirlW 38
                 r H+  Vt ++++   ++l+s+S +D+++  W
  MMETSP0890-20130614|30696_1 55 RVHSQHVTKLRWAGGDSHLLSCSaHDKCVLQW 86
                 6699*******************999999888 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.03
                  SSEEEEEEESSSTEEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgS 30 
                  +pV+++  +p+g +lasg 
  MMETSP0890-20130614|30696_1 243 GPVSAIGAAPNGLFLASGD 261
                  7999*************96 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 1.1e-05
                  SSSSEEEEEEESSSTEEEEEE..TTSEEEEE CS
   PF00400.27  10 HtspVtcvafspdgpllasgS..rDgtirlW 38 
                  H  +V++++fs d+++l+s +  +Dg++ +W
  MMETSP0890-20130614|30696_1 286 HRRSVSSLSFSADSRRLVSVGadSDGSLAVW 316
                  999******************7777777777 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.6
                  ETTSEEE CS
   PF00400.27  30 SrDgtir 36 
                  S+D+t+r
  MMETSP0890-20130614|30696_1 334 SCDRTVR 340
                  99****9 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.57
                  EEETTSEEEEE CS
   PF00400.27  28 sgSrDgtirlW 38 
                  +++ Dg ++ W
  MMETSP0890-20130614|30696_1 358 CSGGDGHVYFW 368
                  67788****** PP

  == domain 6    score: 3.8 bits;  conditional E-value: 0.019
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   + H ++V c a   d  ++++g +Dg + +W+
  MMETSP0890-20130614|30696_1 388 HHRH-KSVLCGAAVND--RFVTGLSDGQLLVWK 417
                  5567.78888888888..9*************6 PP

  == domain 7    score: 21.4 bits;  conditional E-value: 5.5e-08
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   c +++++H ++++++  +     +a+gSrDg ++lW+
  MMETSP0890-20130614|30696_1 420 VCEKSIKAHDDAIESMHAASGEAGFATGSRDGVVKLWS 457
                  688999*******************************7 PP

  == domain 8    score: 19.1 bits;  conditional E-value: 2.9e-07
                  EEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  15 tcvafspd.gpllasgSrDgtirlWd 39 
                  ++++++p+ + ++a++++D t+r+W+
  MMETSP0890-20130614|30696_1 539 WALCVHPSdPDVFATAGDDMTVRVWS 564
                  78999********************7 PP

  == domain 9    score: 5.9 bits;  conditional E-value: 0.0041
                  SSEEEEEEESSSTEEE CS
   PF00400.27  12 spVtcvafspdgplla 27 
                  +p +++a+spdg+ l+
  MMETSP0890-20130614|30696_1 578 GPLRSIAWSPDGTKLL 593
                  6789*******98875 PP

  == domain 10    score: 13.1 bits;  conditional E-value: 2.3e-05
                  EEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  16 cvafspdgpllasgSrDgtirlWd 39 
                    +fspdg+ +a gS D++i+l+d
  MMETSP0890-20130614|30696_1 634 VASFSPDGTKFAFGSTDHKIYLYD 657
                  579*******************98 PP

  == domain 11    score: 4.6 bits;  conditional E-value: 0.011
                  EEEEESSSSSEEEEEEESSSTEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpll 26 
                  +++   H++ +t ++fs d++++
  MMETSP0890-20130614|30696_1 664 IQKSASHNAYITHIDFSTDSKFI 686
                  677789************98886 PP

  == domain 12    score: 0.0 bits;  conditional E-value: 0.29
                  SEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgSrDgtirlW 38 
                   +t+v+ +p ++lla g + g +rl+
  MMETSP0890-20130614|30696_1 746 KITAVSRNPRQSLLAAGDDAGEVRLF 771
                  6999******9999999988888876 PP

  == domain 13    score: 6.0 bits;  conditional E-value: 0.0038
                  ESSSSSEEEEEEESSSTEEEEEE.TTSEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgS.rDgtirlW 38 
                  + H s   +++f  dg++l+s + +D+ti +W
  MMETSP0890-20130614|30696_1 786 HSHASELASLDFTCDGSHLISIGkHDRTIAIW 817
                  567788889999999999999999******** PP

>> PF03178.10  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0043        12     174     209 ..      13      50 ..       9      77 .. 0.76
   2 ?    3.4   0.0     0.011        31     141     200 ..     256     317 ..     235     320 .. 0.82
   3 ?   -3.1   0.0       1.1   2.9e+03     108     129 ..     559     579 ..     555     583 .. 0.89
   4 !    9.4   0.0   0.00016      0.44     130     209 ..     747     827 ..     721     829 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0043
   PF03178.10 174 wvtaaeflvdg.d.tilgaDkfgnlfvlrydpeasess 209
                  +vta++   +    t+++aD+fg + ++r++ ++s+  
  MMETSP0890-20130614|30696_1  13 EVTACDASLKShApTLAAADNFGRIRLYRFPVSSSSAK 50 
                  67888765566468****************96554443 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.011
   PF03178.10 141 riivgDlmkSvtfleydeenkklilfakdtqprwvtaaeflvdg.d.tilgaDkfgnlfvlr 200
                  +++ gD+ k   +  +d    +  ++ k+++ r+v ++ f  d  +   +gaD++g+l v r
  MMETSP0890-20130614|30696_1 256 FLASGDVAKRPRIHVWDGRAGSTAVILKSFHRRSVSSLSFSADSrRlVSVGADSDGSLAVWR 317
                  566677777777777777444478899*****************88999********99876 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.1
   PF03178.10 108 klrvydlgkdksllpkafldkq 129
                  ++rv+ +  +  ll+ka+ld +
  MMETSP0890-20130614|30696_1 559 TVRVWSVSAKR-LLRKAKLDGP 579
                  799********.*****99875 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.00016
   PF03178.10 130 iyvvslkvlgnriivgDlmkSvtfleyde.enkklilfakdtqprwvtaaeflvdg.dtilgaDkfgnlfvlrydpeasess 209
                  i++vs +  ++++++gD    v +++y + +n+ l++ + + ++ ++ +++f  dg + i ++  ++ + + ++++e++e+ 
  MMETSP0890-20130614|30696_1 747 ITAVSRNPRQSLLAAGDDAGEVRLFRYPSlQNQ-LSVKCSHSHASELASLDFTCDGsHLISIGKHDRTIAIWQVEEEEEEEE 827
                  34455555688******************5555.**********************66999*************98776654 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   4.1e+03      15      24 ..     294     303 ..     294     303 .. 0.91
   2 !    7.9   0.1    0.0008       2.2      13      23 ..     582     592 ..     577     593 .. 0.86
   3 !   10.1   0.1   0.00017      0.46      15      28 ..     636     649 ..     632     654 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.5
                  EE-----EEE CS
    PF07676.7  15 awSPDGkkiv 24 
                  ++S D +++v
  MMETSP0890-20130614|30696_1 294 SFSADSRRLV 303
                  79******97 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0008
                  EEEE-----EE CS
    PF07676.7  13 ePawSPDGkki 23 
                  ++awSPDG+k+
  MMETSP0890-20130614|30696_1 582 SIAWSPDGTKL 592
                  68*******98 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00017
                  EE-----EEEEEE- CS
    PF07676.7  15 awSPDGkkivFtSn 28 
                  ++SPDG+k++F S+
  MMETSP0890-20130614|30696_1 636 SFSPDGTKFAFGST 649
                  8**********886 PP

>> PF03451.9  HELP motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06    0.0035      15      75 ..     171     227 ..     165     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
    PF03451.9  15 tvvvPsdvenydleakkelPdkklkLewvygYRgkDcRaNlyllptGeivyfvAavvVlln 75 
                  +vv Psd   +++ +++++P+ kl+L w +g   +  R+ + ++  Ge vy +  + V+++
  MMETSP0890-20130614|30696_1 171 AVVPPSD--AVHKAVESSPPKLKLRLVWSHGCQVE--RSSIVYNALGEAVYPSGKLCVIYS 227
                  4566776..99*****************9997665..9********************996 PP

>> PF00930.16  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   6.8e-05      0.19       1      74 [.     586     662 ..     586     676 .. 0.83
   2 ?    2.2   0.1     0.017        47     247     284 ..     682     721 ..     668     730 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.8e-05
                  -TTSSEEEEEEC.CCE-SSS-EEEEEEEEETTTTBSCE--TT.TT.BSCEEE------EEEE.ETTEEEEESSTTS- CS
   PF00930.16   1 spdgkflllatn.sekewRhsytaeyyiydletneveelppg.eekiqdakwSPdgdklafv.rnnnLyvrelatgk 74 
                  spdg++lll    +++  Rh+  + + + d  t +v++ +++ +    +a +SPdg+k+af   ++ +y+ ++ + +
  MMETSP0890-20130614|30696_1 586 SPDGTKLLLGMGgTKSGTRHPKDGVFLLLDATTLRVTHEARDsRYWFRVASFSPDGTKFAFGsTDHKIYLYDTHSTN 662
                  789999998776366779***************999999999788999*************7357888888776554 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.017
                  -SEEEEEEE---EEEEEEEESS--CCC...BS------EEE CS
   PF00930.16 247 eseflwiserdGykhLylfdldgkkik...alTsGeweVts 284
                  +s+ + +s+  +++hLy+ ++dg++i+   +l   +w+  s
  MMETSP0890-20130614|30696_1 682 DSK-FIQSDAADFEHLYHETSDGSQIRlpsQLKDIQWHTWS 721
                  334.4467899*************95555588888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:01.19
# Mc/sec: 1671.41
//
Query:       MMETSP0890-20130614|30704_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       830  (0.060708); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.40s 00:00:01.14 Elapsed: 00:00:00.65
# Mc/sec: 1529.98
//
Query:       MMETSP0890-20130614|30715_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00063   19.4   0.0     0.0018   17.9   0.0    1.8  1  PF13180.1  PDZ domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.035   14.1   0.0    1.8  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
      0.087   11.6   1.8       0.15   10.8   1.3    1.3  1  PF01062.16 Bestrophin, RFP-TM, chloride channel
        3.3    5.6   7.3        6.1    4.7   5.1    1.4  1  PF11336.3  Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.3e-07    0.0018      16      60 ..     318     366 ..     306     375 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.3e-07
    PF13180.1  16 vlvvs....VkessPaakaglkpGDiilkvdgkkvksltdlkslllkkk 60 
                  ++v s    +   +Pa  ag+++GD i++v  ++v++l+d+k++l++  
  MMETSP0890-20130614|30715_1 318 LTVDShgrvIRVCGPALTAGIAAGDRIIAVATVPVDNLADFKTALANSP 366
                  44444444455679******************************99765 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     1e-05     0.035      32      71 ..     326     366 ..     306     374 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
                  STTT.HHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHT CS
   PF00595.19  32 vvpg.gaaeagglkeGDkIlsvNgvdvenvshdeavqaikg 71 
                  v +  g+a ++g+ +GD+I++v  v+v n+++ + ++a+ +
  MMETSP0890-20130614|30715_1 326 VIRVcGPALTAGIAAGDRIIAVATVPVDNLADFKTALANSP 366
                  566668899999*****************987666666555 PP

>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   4.3e-05      0.15     138     214 ..      27     107 ..      20     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.3e-05
   PF01062.16 138 saavkkr..lealveaglmteeeekle..ksknkpywvpivwaeslqkarkegr.lddialkaldeelnelrealgglerid 214
                  s+a+ ++  le++v+   ++e e+ l+  +++ k  +  +v+ae+ +k r++    ++ +++al +e+++lr+al++ e+i+
  MMETSP0890-20130614|30715_1  27 SVAESRCqqLEDMVQEA-KHELEQNLAlkDNEEKVLASCRVQAENAEKKRRDTLrESQAVVAALKDEVSRLRNALATAESIA 107
                  45555447899999544.55555544442667777777888889997777777769**********************9986 PP

>> PF11336.3  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.1    0.0018       6.1      17      93 ..      69     151 ..      57     169 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0018
    PF11336.3  17 laaaaskaeqikalqaqlaalqqqvkelraalaakpa.aagggakiqsaaa....aaaaapaad.aaaalteddvtelkeqva 93 
                    a++ + + ++  qa +aal+ +v+ lr+ala++++ a +  ++++ a +    aa aa +ad ++aa ++ +  e   + a
  MMETSP0890-20130614|30715_1  69 ENAEKKRRDTLRESQAVVAALKDEVSRLRNALATAESiAVSERTRADVAHTaaerAARAAKSADeSSAARAKAAACETEARFA 151
                  44555667889999*****************9988873333333333333300114455555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1344  (0.0983031); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.42s 00:00:01.53 Elapsed: 00:00:01.01
# Mc/sec: 1456.80
//
Query:       MMETSP0890-20130614|30725_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-19   68.0   0.0    6.7e-19   68.0   0.0    1.6  2  PF05132.9 RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> PF05132.9  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.23   3.2e+03      43      45 ..      22      24 ..       2      50 .. 0.48
   2 !   68.0   0.0   4.9e-23   6.7e-19      10     108 ..      89     188 ..      80     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.23
    PF05132.9 43 eek 45
                 e+k
  MMETSP0890-20130614|30725_1 22 ENK 24
                 111 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 4.9e-23
    PF05132.9  10 lPdvlPelkqtaeakeekee.eekeeeeeekeekeektesskeeksedksskleslpeGkiGkllvhkSGkvklklGdilfdvskGaetkflqevvaida 108
                  lP+ lP++++++e + ++   ++++ ++++ e+k++k +++++ ++e + +++ +l+ GkiGk   h+SGkv+l +Gd++fdv +G ++++ qev+a + 
  MMETSP0890-20130614|30725_1  89 LPSELPRIQPPKEPNDKEVVtDKDKIKDNDDEKKKKKLRPDNDHAEEPRYDEFFKLQPGKIGKYELHQSGKVRLLIGDLVFDVHRGLDCSITQEVAAHQY 188
                  899999999999987666554335566666667777778899999999999********************************************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 760.75
//
Query:       MMETSP0890-20130614|30720_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-08   34.1  11.3    6.7e-06   25.2   2.4    4.2  4  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.2    0.0068        94      14      29 ..      68      83 ..      66      85 .. 0.63
   2 !    3.0   0.0    0.0051        69      19      34 ..      88     103 ..      86     105 .. 0.77
   3 !    5.4   0.1   0.00088        12      21      34 ..     124     137 ..     123     139 .. 0.69
   4 !   25.2   2.4   4.9e-10   6.7e-06       3      34 ..     141     172 ..     139     174 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0068
                 EEEESSEBE-TTEEE- CS
   PF00132.19 14 vvigggviIGdnviIg 29
                 v i+g+ i+ ++v+I+
  MMETSP0890-20130614|30720_1 68 VSIAGDSIVRSGVCIH 83
                 4566666666666665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0051
                  SEBE-TTEEE-TTEEE CS
   PF00132.19  19 gviIGdnviIgagvvi 34 
                   v +G+++ Ig  v++
  MMETSP0890-20130614|30720_1  88 RVRLGRYCDIGREVTL 103
                  6889999999988776 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.00088
                  BE-TTEEE-TTEEE CS
   PF00132.19  21 iIGdnviIgagvvi 34 
                  +IG++v+Ig ++ +
  MMETSP0890-20130614|30720_1 124 TIGSHVRIGRCTLV 137
                  57777777777665 PP

  == domain 4    score: 25.2 bits;  conditional E-value: 4.9e-10
                  EE-TTEEE-TTEEEESSEBE-TTEEE-TTEEE CS
   PF00132.19   3 vIGenvlIgpnvvigggviIGdnviIgagvvi 34 
                   IG +v+Igp++vig ++iI d ++I+ag+ +
  MMETSP0890-20130614|30720_1 141 WIGLGVRIGPGAVIGKCCIIKDFCVIAAGAIL 172
                  67889************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.88
# Mc/sec: 604.54
//
Query:       MMETSP0890-20130614|30729_1  [L=763]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-40  137.4   0.0    3.8e-37  127.9   0.0    2.1  2  PF02181.18 Formin Homology 2 Domain
    2.9e-22   79.4   6.9    8.5e-13   48.7   1.8    3.2  3  PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
  ------ inclusion threshold ------
      0.052   13.7   0.1       0.19   11.9   0.0    2.0  1  PF11173.3  Protein of unknown function (DUF2960)


Domain annotation for each model (and alignments):
>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.0   8.3e-41   3.8e-37       6     267 ..     257     528 ..     255     584 .. 0.86
   2 !    7.5   0.1   0.00031       1.4     304     367 ..     626     688 ..     592     692 .. 0.79

  Alignments for each domain:
  == domain 1    score: 127.9 bits;  conditional E-value: 8.3e-41
                  --SS-B--------SSGGCSSS.HHHHTTCHHHHC..TSHHHHHHHHTBSC--HCCH-----HCCCCTTCCESSS-HHHHHHHHHHCHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHH.....HTTCCC.......GTTB-HHHHHHHCCCTCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---TTT-CCTTG------GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTT CS
   PF02181.18   6 kpkkklkplhWdkvnaaqdrgt.vWdkleeesfek..dldldeleelFsakakkksskkekkkkkkkkkkkikvLdpkrsqnvaIllrklklpaeeivqaileldeevlslellenLlkmlPtkeelekl.....keykgd.......eskLseaeqFllelvkiprleeRleallfksefeeeveelkrkletleaaseeLreseklkklLeliLalGNymNggtrrgqAkGFkLdsLlkLsdvKstdnkttLLhfvvkiveeklpevldlssels 267
                  +p  +++p +W+ ++ +++++t vW+k +++  +   +ld++ le++F++ ++ +  + +k+k+  ++ +  ++ dp+ +qnv+I+l kl++p +e+ +a+ ++d ++++    e L   +P++e+  +           d         + s  e  +  ++++pr++ R++al  +  +++   el++ l+ +++a + + +  +l+  L ++La+GNy+Ng + rg+Ak+F+L+ L +Ls +K++d++ tL  +v++++++  p+  d    l+
  MMETSP0890-20130614|30729_1 257 PPRVPMRPWFWTPLRGEKETTTgVWAKAQSTLVQVqtKLDTKTLENAFAKVQTSTTITTTKSKSIPSAINIRRFVDPRIEQNVGIVLAKLRIPVRELAAAVARGDVNIVTAANAELLKHAIPSDEDAAAAmerddL----DlkpddgtATDASLVEIWFRSCASVPRYRDRVDALRLRHGLDQLALELESALNSVSTAADAVVDHSDLSLALAACLATGNYLNGASVRGDAKAFNLSGLGRLSTTKGADGS-TLAQHVATLLTKSDPQAIDRLHLLK 528
                  6899***********99999999********888789************999988888878888888889999*****************************************************9999532221....2555566688888899*********************************************************************************************85.89999***99998887766554444 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00031
                  TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHH.HHHHHH CS
   PF02181.18 304 keeesdkfvekleefleeaeeklkkleeelkeakelfkelteYfgedpkevspeeffk.ilreFl 367
                  +  e++ fv+++++f   a+ ++++++++   +  +++ +++ fge++   sp+e+f+ +l  F+
  MMETSP0890-20130614|30729_1 626 EYTERQAFVKSVKPFAAVARLRIDEIKNLRAGLDAKLQVCADSFGEASA--SPKELFEeYLGCFI 688
                  567889****************************************886..77777751555555 PP

>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   1.8   1.9e-16   8.5e-13      60     147 ..      66     155 ..      24     156 .. 0.63
   2 !   31.3   0.0   4.3e-11     2e-07     116     148 .]     180     212 ..     161     212 .. 0.91
   3 ?   -3.2   0.0       1.8   8.2e+03      23      38 ..     548     563 ..     544     625 .. 0.60

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.9e-16
    PF10152.4  60 pappaaarrsggpppppg.....araeaaaqeaeaaraetpaeqepealaegrltvrkdpryakYfkmlklgVpaeavknKmqaeGldpelld 147
                   + ++++++s  ++pp++     +++  +++ ++++++++p+    e+++ ++  +++dpr ak+ km kl++p ea+k Km+aeG+dp+lld
  MMETSP0890-20130614|30729_1  66 APLESEMQSSPVEQPPEKnvqspKKVRLPPPLPTSPPPQVPN---AESTTTTNHSTEEDPRVAKFKKMAKLQIPLEAIKLKMKAEGVDPTLLD 155
                  344444444443333333222222233333333333333333...455666777788***********************************9 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4.3e-11
    PF10152.4 116 yakYfkmlklgVpaeavknKmqaeGldpelldt 148
                  +akY kmlk+ +p +a++nKm+aeGldp+ l t
  MMETSP0890-20130614|30729_1 180 LAKYQKMLKMHIPLQAIQNKMRAEGLDPNQLQT 212
                  89***************************9875 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.8
    PF10152.4  23 LveiersLqqlElklq 38 
                  L e++ +L +lE+++q
  MMETSP0890-20130614|30729_1 548 LSELDLRLTRLERLIQ 563
                  4444444555544443 PP

>> PF11173.3  Protein of unknown function (DUF2960)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.1e-05      0.19      17      52 ..       6      41 ..       1      49 [. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.1e-05
    PF11173.3 17 nfsydkfhdiyeAvAaaEGiDlteflamekqveavs 52
                 ++      d  eA A+ +G+Dlt+  ++ +q++a++
  MMETSP0890-20130614|30729_1  6 AYERMTESDRIEALAENDGLDLTDLRSVTQQLQAAA 41
                 55555556778*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       591  (0.043227); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:01.00
# Mc/sec: 1828.42
//
Query:       MMETSP0890-20130614|30732_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1656  (0.121123); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.65
# Mc/sec: 1242.42
//
Query:       MMETSP0890-20130614|30746_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-16   58.8   0.9    2.5e-07   30.0   0.0    3.1  3  PF00023.25 Ankyrin repeat
    1.1e-15   57.1   1.5    9.6e-08   31.9   0.1    3.1  3  PF13857.1  Ankyrin repeats (many copies)
    5.2e-15   55.4   0.0      1e-14   54.4   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    2.4e-09   37.3   0.0    6.1e-09   36.0   0.0    1.8  1  PF13637.1  Ankyrin repeats (many copies)
    1.6e-08   33.8   0.1     0.0036   17.3   0.0    2.8  2  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   9.1e-11   2.5e-07       3      32 ..      62      91 ..      61      92 .. 0.96
   2 !   25.5   0.0   2.5e-09   6.8e-06       3      32 ..      96     125 ..      95     126 .. 0.95
   3 ?   -0.4   0.0       0.4   1.1e+03       8      17 ..     366     375 ..     365     375 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 9.1e-11
                 CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25  3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32
                 +TPLH+A+  + +++v++Ll +GAd+n++d
  MMETSP0890-20130614|30746_1 62 MTPLHVACAEDFVQCVEYLLVNGADVNVRD 91
                 7***************************99 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 2.5e-09
                  CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +TPLH  a+ g+ +v++lL+++GA+l a++
  MMETSP0890-20130614|30746_1  96 ETPLHHGARGGHSRVCRLLVERGASLVARN 125
                  6*************************9998 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.4
                  HHHHTTHHHH CS
   PF00023.25   8 lAalrgnlev 17 
                  lAa++g+ +v
  MMETSP0890-20130614|30746_1 366 LAAKYGHQNV 375
                  8******987 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   3.5e-11   9.6e-08       7      54 ..      49     100 ..      45     101 .. 0.90
   2 !   27.8   0.0   6.6e-10   1.8e-06      17      56 .]      96     135 ..      92     135 .. 0.96
   3 ?   -0.5   0.0      0.54   1.5e+03      22      31 ..     366     375 ..     365     380 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 3.5e-11
    PF13857.1   7 advnatdeggn...tpLhlAakggalevvrlLlapgadlnlrdsdg.ltald 54 
                  ++v+a+ ++g+   tpLh+A+    +++v++Ll +gad n+rd++  +t+l+
  MMETSP0890-20130614|30746_1  49 PNVDALGKNGSvdmTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAhETPLH 100
                  56777778888888************************************97 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 6.6e-10
    PF13857.1  17 ntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  +tpLh  a+gg++ v+rlL+++ga+l +r+++++t++d+A
  MMETSP0890-20130614|30746_1  96 ETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVA 135
                  4*************************************98 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.54
    PF13857.1  22 lAakggalev 31 
                  lAak+g+++v
  MMETSP0890-20130614|30746_1 366 LAAKYGHQNV 375
                  7******998 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   3.8e-18     1e-14      19      89 .]      56     125 ..      30     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 3.8e-18
    PF12796.2  19 kgadvdlgetpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                  k+ +vd   tpLh+A++ + +++v++Ll +gadvn +d    +tpLh+ +r gh  +++lL+e+ga++ +r+
  MMETSP0890-20130614|30746_1  56 KNGSVD--MTPLHVACAEDFVQCVEYLLVNGADVNVRDtRAHETPLHHGARGGHSRVCRLLVERGASLVARN 125
                  445566..78**************************9999999*********************99987775 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.2e-12   6.1e-09       2      54 .]      62     115 ..      45     131 .. 0.98

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2.2e-12
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                  +t+Lh+a++   +++v++Ll +g+d+n +  +  +t+Lh  a++g+ ++++lL+
  MMETSP0890-20130614|30746_1  62 MTPLHVACAEDFVQCVEYLLVNGADVNVRdTRAHETPLHHGARGGHSRVCRLLV 115
                  79***************************77*********************96 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.3e-06    0.0036       3      29 ..      62      88 ..      60      89 .. 0.95
   2 !   13.6   0.0     2e-05     0.054       3      27 ..      96     120 ..      94     123 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.3e-06
    PF13606.1  3 nTpLhlAasngrielveaLlengadin 29
                  TpLh+A+    ++ ve+Ll ngad+n
  MMETSP0890-20130614|30746_1 62 MTPLHVACAEDFVQCVEYLLVNGADVN 88
                 6*************************9 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2e-05
    PF13606.1   3 nTpLhlAasngrielveaLlengad 27 
                  +TpLh+ a+ g+  ++++L+e+ga 
  MMETSP0890-20130614|30746_1  96 ETPLHHGARGGHSRVCRLLVERGAS 120
                  8**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.71
# Mc/sec: 1667.32
//
Query:       MMETSP0890-20130614|30756_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.42s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 700.19
//
Query:       MMETSP0890-20130614|30753_1  [L=859]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-47  161.8   0.0    1.7e-44  151.6   0.0    2.5  2  PF07724.9  AAA domain (Cdc48 subfamily)
    1.9e-25   89.4   0.0    3.6e-14   52.9   0.0    2.8  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    7.5e-20   70.5   0.3    9.6e-19   66.9   0.0    3.1  2  PF10431.4  C-terminal, D2-small domain, of ClpB protein
    9.3e-18   64.1   0.0    5.8e-11   42.1   0.0    3.6  2  PF07728.9  AAA domain (dynein-related subfamily)
    4.4e-14   52.5   0.1    7.4e-06   25.9   0.0    3.2  2  PF13401.1  AAA domain
    3.3e-13   50.2  14.4    1.9e-06   28.2   4.2    4.9  2  PF13191.1  AAA ATPase domain
    1.1e-11   44.3   1.1    4.1e-08   32.9   0.1    3.4  2  PF02861.15 Clp amino terminal domain
    9.4e-10   38.0   0.1      9e-05   21.8   0.0    3.0  2  PF01695.12 IstB-like ATP binding protein
    5.1e-09   35.7   0.0    7.8e-07   28.6   0.0    2.9  2  PF00158.21 Sigma-54 interaction domain
    2.4e-08   33.7   0.0     0.0035   17.1   0.0    2.7  2  PF13173.1  AAA domain
    5.1e-08   33.6   3.4     0.0018   18.9   0.0    4.0  3  PF13207.1  AAA domain
    6.5e-07   28.6   0.2      0.051   12.6   0.2    3.5  2  PF01078.16 Magnesium chelatase, subunit ChlI
    8.3e-07   28.5   0.3      0.095   12.3   0.0    3.6  3  PF13245.1  Part of AAA domain
    9.6e-07   29.0   0.1        0.1   12.7   0.0    3.8  2  PF13238.1  AAA domain
    1.8e-06   27.6   1.3    0.00014   21.5   0.0    4.0  4  PF01637.13 Archaeal ATPase
    2.6e-06   27.4   0.0      0.083   12.9   0.0    2.8  2  PF00910.17 RNA helicase
      1e-05   25.1   0.0      0.012   15.0   0.0    2.7  2  PF05729.7  NACHT domain
    1.8e-05   24.5   0.1       0.31   10.7   0.0    3.5  2  PF13671.1  AAA domain
    3.6e-05   22.7   0.0     0.0038   16.0   0.0    2.7  2  PF00437.15 Type II/IV secretion system protein
    7.2e-05   22.2   0.0       0.53    9.7   0.0    3.4  3  PF07726.6  ATPase family associated with various cellular activities (AAA)
    0.00011   22.0   0.4       0.16   11.7   0.0    3.6  3  PF13521.1  AAA domain
    0.00018   20.8   0.0       0.43    9.8   0.0    3.0  2  PF13481.1  AAA domain
    0.00034   19.6   0.8        1.1    8.1   0.0    3.4  3  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    0.00036   19.5   0.0       0.35    9.8   0.0    3.4  3  PF06414.7  Zeta toxin
     0.0004   19.5   0.0      0.083   11.9   0.0    3.2  3  PF02562.11 PhoH-like protein
    0.00081   18.9   0.0       0.54    9.8   0.0    2.7  2  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
     0.0025   18.1   0.0       0.26   11.6   0.0    2.6  2  PF08477.8  Miro-like protein
     0.0027   16.3   0.7        5.4    5.5   0.0    3.5  3  PF06068.8  TIP49 C-terminus
     0.0031   16.4   0.0       0.61    8.9   0.0    3.0  2  PF09848.4  Uncharacterized conserved protein (DUF2075)
      0.004   16.6   0.0        1.8    7.9   0.0    2.4  2  PF13479.1  AAA domain
     0.0045   16.7   0.0       0.84    9.3   0.0    3.0  2  PF04851.10 Type III restriction enzyme, res subunit
     0.0051   16.2   1.2        7.2    5.9   0.0    3.6  4  PF01580.13 FtsK/SpoIIIE family
     0.0057   16.0   0.0        3.2    7.0   0.0    3.3  3  PF00270.24 DEAD/DEAH box helicase
     0.0063   16.2   1.5       0.18   11.4   0.0    3.2  3  PF01935.12 Domain of unknown function DUF87
     0.0083   15.2   0.2        1.2    8.1   0.0    2.9  3  PF08433.5  Chromatin associated protein KTI12
     0.0087   15.5   0.8       0.24   10.8   0.1    3.1  3  PF13086.1  AAA domain
     0.0098   14.9   0.0       0.25   10.4   0.0    2.3  2  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.012   14.1   0.0       0.61    8.5   0.0    2.4  2  PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
      0.016   14.7   0.0        3.6    7.1   0.1    2.5  2  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.016   14.9   0.0      0.041   13.6   0.0    1.6  1  PF06309.6  Torsin
       0.02   14.4   0.0       0.27   10.8   0.0    2.5  2  PF03266.10 NTPase
      0.038   13.8   0.0        4.9    6.9   0.0    2.7  2  PF13304.1  AAA domain
      0.045   13.0   0.0        2.6    7.3   0.0    2.6  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.047   13.0   0.0        6.4    6.0   0.0    2.6  2  PF00448.17 SRP54-type protein, GTPase domain
      0.075   12.1   8.4         24    3.9   0.0    4.1  2  PF12846.2  AAA-like domain
        0.1   12.5   0.0          2    8.3   0.0    2.5  2  PF01926.18 50S ribosome-binding GTPase
       0.12   11.8   0.0         11    5.5   0.0    2.5  2  PF13555.1  P-loop containing region of AAA domain
       0.18   10.3   8.7       0.39    9.2   6.0    1.6  1  PF08317.6  Spc7 kinetochore protein
       0.37    8.4   6.0       0.54    7.9   4.1    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.59    9.0   5.0        1.1    8.1   0.0    3.3  3  PF06745.8  KaiC


Domain annotation for each model (and alignments):
>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0099       2.7       5     104 ..     181     285 ..     177     306 .. 0.67
   2 !  151.6   0.0   6.2e-47   1.7e-44       2     169 ..     594     758 ..     593     760 .. 0.98

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0099
                  -EEEE-------HHHHHHHHHHTT-..........--EEEEGGG-------THHHH.HHHHHTTT-HHHHT--.-EEEETGGG----------------HHHHHHHH- CS
    PF07724.9   5 silllgptgvGktelakalaellfv......kkekkliradaselleeeevehlvs.rligappgyvgaeegG.ivllDEidKihpkessgadvSregVqrdLLqile 104
                  +  ++gp gvGkt l + la+ +         +   l ++d+s+l+ + + +   + rl+   +  v+    G i+++DE+  +     +g+     +  ++L ++l 
  MMETSP0890-20130614|30753_1 181 NPVICGPPGVGKTALVEGLAQRIVEndcpqsMRGIGLRTLDMSSLISGAKYRGEFEeRLKAVMKEVVESPLPGiILFIDEVHLVLG---AGRTDGAMDAANILKPLLA 285
                  55789*********999999988447777665666788999999999555544443144444455555555556778899876655...4444444555555555555 PP

  == domain 2    score: 151.6 bits;  conditional E-value: 6.2e-47
                  ----EEEE-------HHHHHHHHHHTT-....--EEEEGGG-------THHHHHHHHHTTT-HHHHT--............-EEEETGGG----------------HHHHHHHH---EE-------EE-TT--EEEE------TTGGGTS-STTTTSGGG--HHHHHH----TTT----- CS
    PF07724.9   2 piisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeevedllkkglipEllgRlp 169
                  p++ +ll+g+tg+Gkt++ak+la  lf +++++l+r+d+se+ e    +h+v+rlig+ppgyvg+++gG            ++llDEi+K+hp           +V+++LLq+l++g+ltd++gr+vd++++++I+t+++gs+    ++ s+ + ++k+k +v++ l++++ pE+l+Rl 
  MMETSP0890-20130614|30753_1 594 PLGAFLLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDMSEYSE----AHSVARLIGSPPGYVGFDQGGqlteavrkspyvVLLLDEIEKAHP-----------NVLKVLLQLLDEGRLTDSHGRTVDFTQCVVILTSNVGSQYLLAADLSSGTIDDKTKANVHAMLRAQFPPEFLNRLT 758
                  7899**********************989999************....********************************999**********...........*******************************************99999**************************97 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.3e-16   3.6e-14       3     126 ..     184     316 ..     182     321 .. 0.80
   2 !   33.5   0.0   1.3e-10   3.5e-08       2     111 ..     599     718 ..     598     740 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.3e-16
                  EE-------HHHHHHHHHHC..........THEEEEEECCSSS..SST-HHHHHHHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS..GGGS-HHHH.H.TTSCC CS
   PF00004.24   3 lyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr..pdkldpall.r.gRfdr 126
                  ++GppG+GKT+l++ +a+ +          g+ + ++++s+l+   ky ge e+++++++ke+ e+  p +ilfiDE++ + ++     ++ +++++n L + l + +       vigat++  ++k+ +a     +Rf++
  MMETSP0890-20130614|30753_1 184 ICGPPGVGKTALVEGLAQRIvendcpqsmrGIGLRTLDMSSLIsgAKYRGEFEERLKAVMKEVVESPLPgIILFIDEVHLVLGAG---RTDGAMDAANILKPLLARGQL-----RVIGATTDdeYRKYIEADAaFeRRFQK 316
                  78*****************7666666655657788888888885567***************75555488************999...89999***********99977.....7*****997755554444412356655 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 1.3e-10
                  EEE-------HHHHHHHHHHC....THEEEEEECCSSSSS............T-HHHHHHHHHHHHHHHHTS-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT........S.TEEEEEE-SS CS
   PF00004.24   2 llyGppGtGKTllakavakel....gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk........eskvivigatnr 111
                  ll+G  GtGKTl+ak++a el    ++ + ++++se  +             yvg  +    + ++ea +k+ p ++l++DEi++ +++            ++ Ll+ ld+ +            +++vi+++n 
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELfddsKSALTRLDMSEYSEAhsvarligsppgYVGFDQGG--Q-LTEAVRKS-PyVVLLLDEIEKAHPNV-----------LKVLLQLLDEGRLTdshgrtvdFTQCVVILTSNV 718
                  89******************8776679999999999995579999888888866644332..2.33333444.77************999...........9999999999888888899999555999999987 PP

>> PF10431.4  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       5.9   1.6e+03      10      32 ..     490     513 ..     487     517 .. 0.79
   2 !   66.9   0.0   3.5e-21   9.6e-19       1      80 [.     765     844 ..     765     845 .. 0.98

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 5.9
                  HHHHHHHHHHHHHTTT.-EEEE-H CS
    PF10431.4  10 vdlqlkklekrlaerg.veleltd 32 
                  v++ l++l+++la+++ +e++l++
  MMETSP0890-20130614|30753_1 490 VEERLAQLKANLAQQEaMEIDLEP 513
                  678899999999885548888776 PP

  == domain 2    score: 66.9 bits;  conditional E-value: 3.5e-21
                  --HHHHHHHHHHHHHHHHHHHHTTT-EEEE-HHHHHHHHC----TT---TTHHHHHHHHTHHHHHHHHH--------EEE CS
    PF10431.4   1 LskeelkkIvdlqlkklekrlaergveleltdealdalaekgydpeyGARpLrriiereiedplaelilsgelkegdtvr 80 
                  L++++l+++v ++   l+ rl+e++++++++++a +a+++++ dp++GARp++r++e ei+++++++il+g++++g+++ 
  MMETSP0890-20130614|30753_1 765 LGRSHLRQVVFKAAGTLADRLKEHEIDFSISENACEAILDAAQDPQFGARPIERYVESEITTAISQMILAGKISKGRHIL 844
                  7899************************************************************************9986 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.9e-06    0.0027       4      75 ..     184     262 ..     181     314 .. 0.78
   2 !   42.1   0.0   2.1e-13   5.8e-11       2     125 ..     598     720 ..     597     733 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 9.9e-06
                  EE------HHHHHHHGGGGB.....S--EEEEE--TT--HHHH---B--............--------G-SEEEEESGG CS
    PF07728.9   4 LvGppGtgKselaerlaeal.....nreveyvqltrdtteedlkgrreia...ngttslvdsplvraaregeilvlDEve 75 
                  + GppG+gK+ l+e la+++      +++    + r +  + l+ + +++   +++ + v +++v++   g il++DEv+
  MMETSP0890-20130614|30753_1 184 ICGPPGVGKTALVEGLAQRIvendcPQSMRG-IGLRTLDMSSLISGAKYRgefEERLKAVMKEVVESPLPGIILFIDEVH 262
                  78*******************9653333333.3456789999999999986666677777777777777*********98 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 2.1e-13
                  EEEE------HHHHHHHGGGGB....S--EEEEE--TT--HHHH---B--...........--------..G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS-- CS
    PF07728.9   2 vlLvGppGtgKselaerlaeal....nreveyvqltrdtteedlkgrreia.ngttsl.vdsplvraar..egeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpld 125
                  +lL G +GtgK+ +a++la+ l    ++ ++   ++++ ++  +   +  + +g   + + + l++a+r     +l+lDE+e+a+++vl++Ll+ll+e rl+ ++ g+ v++ +         vi t+n  +
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELfddsKSALTRLDMSEYSEAHSVARLIG-SpPGYVGFdQGGQLTEAVRksPYVVLLLDEIEKAHPNVLKVLLQLLDEGRLT-DSHGRTVDFTQ-------CVVILTSNVGS 720
                  79*****************999998444444455555555555554444.4555555515579999999633357789***********************9.66666666766.......88888888665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.7e-08   7.4e-06       5     130 ..     180     303 ..     176     304 .. 0.82
   2 !   22.7   0.0   2.8e-07   7.6e-05       6     113 ..     597     694 ..     593     715 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.7e-08
    PF13401.1   5 gilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrt..rlliiDEaqr.L....s...eealeelrsllddetgvklvlvGtp.elekl 130
                  +  v++G++GvGKT l++ la+            r+v  ++p+s+   +l++   s l ++ak r++ ee l+a+ + + +      +l iDE++  L    +   ++a + l+ ll  + ++ ++ + t  e +k+
  MMETSP0890-20130614|30753_1 180 NNPVICGPPGVGKTALVEGLAQ------------RIVENDCPQSMRGIGLRTLDMSSLISGAKYRGEFEERLKAVMKEVVESPLpgIILFIDEVHLvLgagrTdgaMDAANILKPLLA-RGQLRVIGATTDdEYRKY 303
                  5569******************............599********888888888888888888877777777777777777777799*********6687751567999999999999.999999998888777776 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 2.8e-07
    PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrslldd 113
                    +++G +G+GKT+ ++ la +l          +  +     ++s  + ++ +++ +g+p+       +   +l+ea+r+    +l++DE++  + ++l+ l  lld 
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKSLAAELFD--------DSKSALTRLDMSEYSEAHSVARLIGSPPGY--VGFDQGGQLTEAVRKSPYVVLLLDEIEKAHPNVLKVLLQLLDE 694
                  679******************9944........333333333333344556677777777777..66678899*********************9*******999994 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   4.2     7e-09   1.9e-06       2     127 ..     160     286 ..     159     539 .. 0.86
   2 !   19.7   0.8   2.8e-06   0.00078       2     157 ..     567     694 ..     566     713 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 7e-09
    PF13191.1   2 lvGRereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.........lpysaiiqa......lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalar 127
                  ++GR++e++++ + l+r +  +p  ++ Gp+G+GK++L++ la++i+ +++ +   ++ + + +                 +      l+++++++       +  + ++    lga      +++g  ++++ l ++lar
  MMETSP0890-20130614|30753_1 160 VIGRDEEIRRVIQILSRRTKNNP--VICGPPGVGKTALVEGLAQRIVENDCPQSMRGIGLRTLDmsslisgakY-------RgefeerLKAVMKEVVESPLPGIILFIDEVHLVLGA-----GRTDGAMDAANILKPLLAR 286
                  78***************999986..589********************99999988888888775544333320.......033333355555555555444444444444444444.....5555555555555555555 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.8e-06
    PF13191.1   2 lvGRereleaLlaalrrvsegsp.......lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartrrpk.lvlvlDDlqwadresldlLealler 157
                   vG ++ ++ ++aa+ r+++g +       ++l+ G  G+GK+ ++++la++++++                         +++l +l   + +e+ + ++ + +  g               +++  ++ +  r+++ +vl+lD++  a +  l++L+ ll++
  MMETSP0890-20130614|30753_1 567 IVGQDESIAVIAAAILRSRAGLGranqplgAFLLCGSTGTGKTLMAKSLAAELFDD------------------------SKSALTRLDMSEYSEAHSVARLIGSPPGY------------VGFDQGGQLTEAVRKSPyVVLLLDEIEKAHPNVLKVLLQLLDE 694
                  6899999999999999988888888999989*****************66665543........................56666666666666666666666666666............5666666666666655679999999999999999999999987 PP

>> PF02861.15  Clp amino terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0065       1.8       4      39 ..       2      35 ..       1      49 [. 0.92
   2 !   32.9   0.1   1.5e-10   4.1e-08       5      53 .]      79     125 ..      75     125 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0065
                 HHHHTTBSEE-HHHHHHHHTTSCTSHHHHHHHHTT- CS
   PF02861.15  4 lAkelgdqyistEHLLLALleeddgiaariLkkaGv 39
                  Ak++g++  ++ H+ L Lle+d   + riL++a++
  MMETSP0890-20130614|30753_1  2 AAKQNGHALCEPCHIALCLLEND--YGTRILNRANI 35
                 69*********************..99******998 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.5e-10
                  HHHTTBSEE-HHHHHHHHTTSCTSHHHHHHHHTT--HHHHHHHHHHHHH CS
   PF02861.15   5 AkelgdqyistEHLLLALleeddgiaariLkkaGvdlealreaieklrg 53 
                  +k+ gd++i  +HL+LAL  e+  + a+iLk +G+d   +++a++ lrg
  MMETSP0890-20130614|30753_1  79 SKQQGDSFIAQDHLFLALYGEQ--DVAKILKHHGLDSTSAKKAVDMLRG 125
                  79******************99..********************99987 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.3e-07     9e-05      45     108 ..     177     244 ..     163     259 .. 0.83
   2 !   12.6   0.0   0.00021     0.058      50      77 ..     598     625 ..     593     633 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.3e-07
   PF01695.12  45 eqaenlvllGpsGvGKthlAialgveavr....aglsvlfvrledLveeLkrakgdgrleralkrlak 108
                  ++++n v++Gp+GvGKt l  +l+++ v+    + ++   +r+ d+ + ++ ak  g++e++lk ++k
  MMETSP0890-20130614|30753_1 177 RTKNNPVICGPPGVGKTALVEGLAQRIVEndcpQSMRGIGLRTLDMSSLISGAKYRGEFEERLKAVMK 244
                  67899******************999988222244566778999999999999999999999998887 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00021
   PF01695.12  50 lvllGpsGvGKthlAialgveavragls 77 
                  ++l+G +G+GKt +A +l+ e  ++ +s
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDDSKS 625
                  79*****************998776665 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0       0.1        28       2      46 ..     161     203 ..     160     264 .. 0.82
   2 !   28.6   0.0   2.8e-09   7.8e-07      24     140 ..     597     715 ..     567     727 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.1
                  -.-SHHHHHHHHHHHHHTTS-S-EEEE-------HHHHHHHHHTS CS
   PF00158.21   2 igesealkelleqikkvaktdltvlitGesGtGKellAraiheas 46 
                  ig++e+++++++ +++   t+ + +i G  G+GK+ l + + ++ 
  MMETSP0890-20130614|30753_1 161 IGRDEEIRRVIQILSRR--TKNNPVICGPPGVGKTALVEGLAQRI 203
                  77888888888888775..5566789*********9988776654 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.8e-09
                  -EEEE-------HHHHHHHHH.TSTTTTS--EEEETTTS-HHHHHHHH------------S---..--TTTG----EEEET-----HHHHHHHHHHHH---BE------EB-----EEEE CS
   PF00158.21  24 tvlitGesGtGKellAraihe.askrkkkpfvavncaaipeeLleseLFGhekGaFtGAekekk..GlfekadgGtLfLDeigelplelQekLlrvlqegeverlGsekeikvdvriiaa 140
                    l+ G +GtGK+l+A+++ +   + +k+ + ++++++++e    ++L G   G + G ++ ++   +++k+   +L+LDei++  +++ + Ll++l+eg+++   +++   +++ +i +
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKSLAAeLFDDSKSALTRLDMSEYSEAHSVARLIGSPPG-YVGFDQGGQltEAVRKSPYVVLLLDEIEKAHPNVLKVLLQLLDEGRLTDSHGRTVDFTQCVVILT 715
                  5799**************987356778889********************9998.88887766555678888899*************************98876555555555555555 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-05    0.0035       6      93 ..     183     292 ..     178     323 .. 0.65
   2 !   13.7   0.0   0.00014      0.04       5      88 ..     598     696 ..     596     702 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.3e-05
    PF13173.1   6 vitGpRrvGKttllkqlakell......keesilyinlddeel.....rkla.dpe.llelflek.lke...kkkylflDEiqev.........pewedalkslvddgrnldvi 93 
                  vi Gp +vGKt l++ la++        + + i   +ld  +l     +  + ++e  l++++++   e      +lf+DE++ v          ++ ++lk l+ +g +l+vi
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVendcpqSMRGIGLRTLDMSSLisgakY--RgEFEeRLKAVMKEvV-EsplPGIILFIDEVHLVlgagrtdgaMDAANILKPLLARG-QLRVI 292
                  89*************9998888888654333444444444444555331..2233344455666532.23566689*********88888888777888888888877.55555 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 0.00014
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe............llelfleklke........kkky..lflDEiqev.pewedalkslvddgr 88 
                   ++ G  ++GKt ++k la el+++++     ld  e+ +++  +             +        +        k+ y  l+lDEi ++ p++ ++l +l+d+gr
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDMSEYSEAHSVArligsppgyvgfDQ--------GgqlteavrKSPYvvLLLDEIEKAhPNVLKVLLQLLDEGR 696
                  6789999****************767777777777666443322223343333333211........0222233444444469******99679******9999874 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.7e-06    0.0018       3      36 ..     183     236 ..     182     315 .. 0.73
   2 ?    0.0   1.4       4.6   1.3e+03      44     100 ..     423     486 ..     393     518 .. 0.47
   3 !   10.7   0.0    0.0023      0.63       3      32 ..     599     634 ..     598     696 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.7e-06
                  --B--TT---HHHHHHHHHHS............TEEEEEGGGB-........-G CS
    PF13207.1   3 aitGppGsGKsTlakeLaerl............glpvlslddll........re 36 
                  +i+GppG+GK+ l + La+r             gl+ l++++l+         e
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIvendcpqsmrgiGLRTLDMSSLIsgakyrgeFE 236
                  69******************6666555555555888999999533443222222 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 4.6
                  ---B--SSGGGB-HHHHHHHH....H..HHHHHH..........TTS-----.------EEEEE---- CS
    PF13207.1  44 dgereskdadadllaaildglaakkdtlswvidg..........aleseldl.rleeadeiiyldapl 100
                  +++ + k+a+++++ + l++ +++++++ + + +          + +    + r+ + +++++l++++
  MMETSP0890-20130614|30753_1 423 ADV-KLKIANLKEQLQPLEEQWNQERYRADELRDlqekldrlklKAQ---VArRNQDFERAADLEYAA 486
                  333.3344444444444444444333222222223332322111111...111333333444444444 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.0023
                  --B--TT---HHHHHHHHHHS......TEEEEEGGG CS
    PF13207.1   3 aitGppGsGKsTlakeLaerl......glpvlsldd 32 
                  +++G +G+GK+  ak La +l       l  l++++
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELfddsksALTRLDMSE 634
                  689****************98665544455666666 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0075         2       9      44 ..     165     201 ..     156     218 .. 0.73
   2 !   12.6   0.2   0.00019     0.051      25      65 ..     598     643 ..     588     720 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0075
   PF01078.16   9 eeakraleiaa.aGgHnlllvGppGsGKtmlakrlps 44 
                  ee +r+++i     + n +++GppG GKt l + l++
  MMETSP0890-20130614|30753_1 165 EEIRRVIQILSrRTKNNPVICGPPGVGKTALVEGLAQ 201
                  45567777644156678899**********9987765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00019
   PF01078.16  25 lllvGppGsGKtmlakrlpsllpp.....lseeealevakiasvag 65 
                  +ll+G+ G+GKt++ak l++ l +     l++ ++ e ++ +sva+
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDdsksaLTRLDMSEYSEAHSVAR 643
                  79***************99877541111144445555555555554 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00035     0.095       9      37 ..     180     205 ..     169     216 .. 0.67
   2 ?    0.5   0.0       1.7   4.7e+02      23      62 ..     326     361 ..     315     381 .. 0.82
   3 !   10.9   0.0   0.00092      0.25      12      37 ..     597     622 ..     575     639 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00035
    PF13245.1   9 gnpllvvtGgPGtGKTttlaaiiaallaa 37 
                  +np++   G+PG GKT +l+ + a+++ +
  MMETSP0890-20130614|30753_1 180 NNPVI--CGPPGVGKT-ALVEGLAQRIVE 205
                  35554..6********.777777776633 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 1.7
    PF13245.1  23 KTttlaaiiaallaarekpgrsvllvaptgraakrlserl 62 
                   T +++++ ++++++    +++v ++ +   aa++ls+r 
  MMETSP0890-20130614|30753_1 326 ATVAILRGLRDRYES----HHGVQILDSALVAAAQLSHRY 361
                  688899999999977....888*****9999*99999886 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00092
    PF13245.1  12 llvvtGgPGtGKTttlaaiiaallaa 37 
                   +++ G  GtGKT  +  ++a+l+++
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKSLAAELFDD 622
                  48899******************943 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00038       0.1       2      23 ..     183     207 ..     183     251 .. 0.76
   2 !   11.4   0.0   0.00094      0.26       2      41 ..     599     638 ..     599     692 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00038
    PF13238.1   2 litGtpGvGKtTlakeLaerl...g 23 
                  +i+G+pGvGKt l + La+r+    
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIvenD 207
                  69****************9964440 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00094
    PF13238.1   2 litGtpGvGKtTlakeLaerlgdvlrdlakengleeevdd 41 
                  l++G +G+GKt  ak La +l d  ++ +   +++e+ + 
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDMSEYSEA 638
                  589*****************97777777777777666655 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.2e-07   0.00014       3      46 ..     162     205 ..     160     255 .. 0.83
   2 ?   -1.5   0.0       5.3   1.4e+03     101     130 ..     234     264 ..     206     292 .. 0.75
   3 ?    0.6   0.0       1.2   3.3e+02      24      63 ..     599     638 ..     591     645 .. 0.79
   4 ?    0.0   0.0       1.8     5e+02     114     150 ..     665     694 ..     657     744 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.2e-07
                  S-HHHHHHHHHHHHH..-SEEEEE--TT---HHHHHHHHHH-.. CS
   PF01637.13   3 DRekELkeleeilerepnsiiviyGprrsGKTaLlkeileelke 46 
                   R++E++++ +il+r++++  vi Gp ++GKTaL++ ++++  e
  MMETSP0890-20130614|30753_1 162 GRDEEIRRVIQILSRRTKNNPVICGPPGVGKTALVEGLAQRIVE 205
                  7*********************************9988888744 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 5.3
                  G.G--HHHHHHHHHH----.EEEEEETGGGG CS
   PF01637.13 101 lvflaleellealkkkgkk.iiiiiDElqkl 130
                   +++ l+ +++++ ++    ii+ iDE+  +
  MMETSP0890-20130614|30753_1 234 EFEERLKAVMKEVVESPLPgIILFIDEVHLV 264
                  455566666666666666589******9765 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 1.2
                  EEE--TT---HHHHHHHHHH-..---HHHHH------HHH CS
   PF01637.13  24 viyGprrsGKTaLlkeileelkekgkrvvyyinlreefes 63 
                  ++ G  ++GKT + k ++ el + +k ++   +++e++e+
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDMSEYSEA 638
                  788*************999998877777666666666655 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 1.8
                  HH----...EEEEEETGGGGG-------HHHHHHHHHHHH CS
   PF01637.13 114 kkkgkk...iiiiiDElqklilglngakslvkeLlnlids 150
                  +    k   +++++DE+ k+        +++k Ll+l+d 
  MMETSP0890-20130614|30753_1 665 R----KspyVVLLLDEIEKAH------PNVLKVLLQLLDE 694
                  3....23449*********99......4455555555544 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00087      0.24       2      24 ..     183     205 ..     182     218 .. 0.89
   2 !   12.9   0.0    0.0003     0.083       2      27 ..     599     624 ..     598     640 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00087
   PF00910.17   2 wlyGpsgeGKStlakeLakallk 24 
                  +++Gp+g+GK+ l++ La+++ +
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVE 205
                  69****************99974 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.0003
   PF00910.17   2 wlyGpsgeGKStlakeLakallkklk 27 
                  +l+G++g+GK+++ak+La++l +++k
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSK 624
                  699*****************997764 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.5e-05     0.012       4      32 ..     183     211 ..     181     220 .. 0.93
   2 ?    7.0   0.0     0.013       3.6       4      92 ..     599     679 ..     597     701 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.5e-05
    PF05729.7   4 ilqGeaGsGKTtLlqklasawakgklpqd 32 
                  ++ G++G+GKT+L+ +la+ + ++++pq 
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVENDCPQS 211
                  688***********************995 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.013
    PF05729.7   4 ilqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrsknarsladlLfsqlpepaapvsevwivllelperlLlilDglDe 92 
                  +l G  G GKT ++++la ++ ++   +        l ++e s+     s+a+l+ s+   ++ ++   +++ ++  + ++l+lD +++
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSKSAL-----TRLDMSEYSEA---HSVARLIGSPPGYVGFDQGGQLTEAVRKSPYVVLLLDEIEK 679
                  678***************99987774443.....23344444433...25566665555555555555555555556666666665555 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0011      0.31       4      21 ..     184     201 ..     183     219 .. 0.92
   2 !    9.4   0.0    0.0029      0.79       3      23 ..     599     619 ..     597     645 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0011
    PF13671.1   4 lvGlpGsGKstlaerllk 21 
                  ++G+pG GK+ l+e+l++
  MMETSP0890-20130614|30753_1 184 ICGPPGVGKTALVEGLAQ 201
                  7**************997 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0029
    PF13671.1   3 llvGlpGsGKstlaerllkkl 23 
                  ll+G  G+GK+  a++l+++l
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAEL 619
                  89***************9987 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.09        25     115     155 ..     165     206 ..     128     209 .. 0.72
   2 !   16.0   0.0   1.4e-05    0.0038     126     204 ..     593     673 ..     451     681 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.09
   PF00437.15 115 kklaevlrqav.qargnilvsGgTgsGKttllnallaeinkd 155
                  +++++v++    +++ n ++ G+ g GKt l++ l + i ++
  MMETSP0890-20130614|30753_1 165 EEIRRVIQILSrRTKNNPVICGPPGVGKTALVEGLAQRIVEN 206
                  455555543320367899**************9999888765 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.4e-05
   PF00437.15 126 qargnilvsGgTgsGKttllnallaeinkdderivtiEDpvElqlegenqvqlnak...kakvtfadllraaLRqrPDrilv 204
                  q  g +l+ G Tg+GKt ++++l ae+ +d++  +t  D  E+  ++  +  +  +    ++ +    l  a+R+ P ++l+
  MMETSP0890-20130614|30753_1 593 QPLGAFLLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDMSEYSEAHSVARLI-GSppgYVGFDQGGQLTEAVRKSPYVVLL 673
                  447899************************9***********99777654444.4445555566666788888888877754 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.067        18       4      23 ..     184     203 ..     182     228 .. 0.91
   2 ?    3.4   0.0      0.18        49       3      23 ..     599     619 ..     597     633 .. 0.85
   3 !    9.7   0.0     0.002      0.53      65     111 ..     671     717 ..     654     724 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.067
    PF07726.6   4 legvPGlaktllvkalakal 23 
                  + g PG++kt lv+ la+ +
  MMETSP0890-20130614|30753_1 184 ICGPPGVGKTALVEGLAQRI 203
                  6789*************976 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.18
    PF07726.6   3 llegvPGlaktllvkalakal 23 
                  ll g  G++ktl++k+la+ l
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAEL 619
                  788999***********9876 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.002
    PF07726.6  65 llladeinrappktqsalleameerqvtve.gethklpepflvlatqn 111
                  +ll dei +a p +   ll+ ++e ++t + g+t ++ +   v+ t n
  MMETSP0890-20130614|30753_1 671 VLLLDEIEKAHPNVLKVLLQLLDEGRLTDShGRTVDFTQCV-VILTSN 717
                  7999***********************96515666666654.455555 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0006      0.16       3      22 ..     183     202 ..     181     216 .. 0.85
   2 ?   -0.9   0.1       4.5   1.2e+03     102     155 ..     354     410 ..     300     416 .. 0.67
   3 ?    5.8   0.0      0.04        11       2      22 ..     598     618 ..     597     641 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0006
    PF13521.1   3 vitGgpstGKTtlleaLaar 22 
                  vi G+p++GKT l+e La+r
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQR 202
                  89****************98 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 4.5
    PF13521.1 102 eaarekrydl.vfllppepei..eqDgeRredeeeaeaiderlrealeelgipviev 155
                  +a  ++ry    fl + + ++  e    Rr +++   +  ++l+  + +l i+ i +
  MMETSP0890-20130614|30753_1 354 AAQLSHRYISgRFLPDKAIDLidEAASSRRVQLDSKPEELDALERKVAALEIEAISL 410
                  333356666655555555555555666666666666666666666666666666655 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.04
    PF13521.1   2 ivitGgpstGKTtlleaLaar 22 
                  + + G  +tGKT  ++ Laa+
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAE 618
                  5789**************985 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0071       1.9      37      58 ..     183     204 ..     156     255 .. 0.86
   2 !    9.8   0.0    0.0016      0.43      34      58 ..     596     620 ..     566     642 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0071
    PF13481.1  37 llaGapgtGKStlalqlaaava 58 
                  ++ G+pg+GK+ l+  la ++ 
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIV 204
                  799***********99999887 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0016
    PF13481.1  34 sltllaGapgtGKStlalqlaaava 58 
                  +  ll G++gtGK+ +a +laa + 
  MMETSP0890-20130614|30753_1 596 GAFLLCGSTGTGKTLMAKSLAAELF 620
                  5689*****************9876 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0065       1.8      53      74 ..     182     203 ..     156     230 .. 0.79
   2 ?   -0.6   0.0       1.8     5e+02     102     112 ..     253     263 ..     236     267 .. 0.78
   3 !    8.1   0.0    0.0039       1.1      25      76 ..     566     621 ..     545     629 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0065
    PF05496.7  53 vllyGpPGlGkttlakiiakel 74 
                   +++GpPG+Gkt+l + +a+ +
  MMETSP0890-20130614|30753_1 182 PVICGPPGVGKTALVEGLAQRI 203
                  4689**********99888765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.8
    PF05496.7 102 kdvlfideihr 112
                  + +lfide+h 
  MMETSP0890-20130614|30753_1 253 GIILFIDEVHL 263
                  559*******5 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0039
    PF05496.7  25 eyigqekvkeklkifieaak...kr.eealdhvllyGpPGlGkttlakiiakelgv 76 
                    +gq++  + ++ +i  ++    r +++l   ll+G  G Gkt +ak +a+el  
  MMETSP0890-20130614|30753_1 566 RIVGQDESIAVIAAAILRSRaglGRaNQPLGAFLLCGSTGTGKTLMAKSLAAELFD 621
                  56777777777766664333111342678999********************9865 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.031       8.5      19      40 ..     182     203 ..     167     209 .. 0.83
   2 ?   -2.9   0.0       9.9   2.7e+03     132     179 ..     355     407 ..     343     423 .. 0.65
   3 !    9.8   0.0    0.0013      0.35      18      57 ..     597     639 ..     590     688 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.031
    PF06414.7  19 vllgGqpGAGKtslaellleel 40 
                   +++G+pG GKt+l e l +++
  MMETSP0890-20130614|30753_1 182 PVICGPPGVGKTALVEGLAQRI 203
                  5899***********9998876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 9.9
    PF06414.7 132 kelSelgilqRyeee.....laekgegRrvpkevhdeayeglpesvealeaek 179
                   +lS+  i  R+  +      +e+ + Rrv+ ++  e  + l++ v+ale e 
  MMETSP0890-20130614|30753_1 355 AQLSHRYISGRFLPDkaidlIDEAASSRRVQLDSKPEELDALERKVAALEIEA 407
                  55677777777766644443333333588888888888888888777777644 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.0013
    PF06414.7  18 avllgGqpGAGKtslaellleela...agnivridaDelrkyh 57 
                  a+ll+G++G GKt +a+ l  el    +    r+d  e+ + h
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKSLAAELFddsKSALTRLDMSEYSEAH 639
                  79*****************999987866677788888887777 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.16        43      10      45 ..     168     205 ..     159     218 .. 0.76
   2 ?   -1.0   0.0       2.8   7.7e+02      87     138 ..     334     388 ..     320     428 .. 0.70
   3 !   11.9   0.0    0.0003     0.083      23      48 ..     599     624 ..     590     631 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.16
   PF02562.11  10 keylealk..kndivfaiGpaGtGKTylavalavealk 45 
                  +++++ l   +++  ++ Gp G GKT l   la + ++
  MMETSP0890-20130614|30753_1 168 RRVIQILSrrTKNNPVICGPPGVGKTALVEGLAQRIVE 205
                  566677766566788999********998777766665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.8
   PF02562.11  87 Lkdllgaekvekllekgkievapl..afmRGrTLddafv.ilDEaqnttkeqmkm 138
                  L+d +++++  ++l++  +  a+l  +++ Gr L d+ + ++DEa   ++ q+++
  MMETSP0890-20130614|30753_1 334 LRDRYESHHGVQILDSALVAAAQLshRYISGRFLPDKAIdLIDEAASSRRVQLDS 388
                  566666666667777777777766225899***988777699**99988888765 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.0003
   PF02562.11  23 faiGpaGtGKTylavalavealkkkk 48 
                  ++ G++GtGKT++a +la+e++ ++k
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSK 624
                  578****************9998755 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     0.002      0.54       5      28 ..     184     207 ..     182     212 .. 0.91
   2 ?    6.0   0.0     0.029         8       3      34 ..     598     629 ..     597     635 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.002
                  EE-------HHHHHHHHHHHHH-- CS
    PF03205.9   5 vvGpkdsGKTtlieklvnklkerg 28 
                  ++Gp ++GKT l+e l++ ++e++
  MMETSP0890-20130614|30753_1 184 ICGPPGVGKTALVEGLAQRIVEND 207
                  89******************9986 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.029
                  EEEE-------HHHHHHHHHHHHH-------E CS
    PF03205.9   3 vavvGpkdsGKTtlieklvnklkergyrvavv 34 
                  ++++G +++GKT ++++l+ +l +++    + 
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDDSKSALTR 629
                  5789****************999877766655 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00096      0.26       3      37 ..     183     216 ..     181     244 .. 0.83
   2 ?    3.8   0.0      0.26        70       3      25 ..     599     621 ..     597     645 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00096
    PF08477.8   3 vvvGdkgvGKssllsqlvgeefpkkklpeeikgdt 37 
                  v++G +gvGK++l++ l+++  + +  p+ + g +
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVE-NDCPQSMRGIG 216
                  89***************988777.66776666655 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.26
    PF08477.8   3 vvvGdkgvGKssllsqlvgeefp 25 
                  +++G++g+GK+ + ++l+ e f+
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFD 621
                  79*********888888887777 PP

>> PF06068.8  TIP49 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.04        11      54      77 ..     183     206 ..     166     224 .. 0.83
   2 ?    2.2   0.0      0.19        53     257     290 ..     230     264 ..     223     265 .. 0.81
   3 ?    5.5   0.0      0.02       5.4      52      77 ..     597     622 ..     552     640 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.04
    PF06068.8  54 LlaGppgtGktalaiaiskelged 77 
                  ++ Gppg Gktal  ++++ + e+
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVEN 206
                  589****************99753 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.19
    PF06068.8 257 klReeinkkvakyveegkaeivpGv.lfiDevhml 290
                  k R e ++ ++  ++e +   +pG+ lfiDevh++
  MMETSP0890-20130614|30753_1 230 KYRGEFEERLKAVMKEVVESPLPGIiLFIDEVHLV 264
                  678888888888888888888999548******85 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.02
    PF06068.8  52 avLlaGppgtGktalaiaiskelged 77 
                  a Ll G +gtGkt +a +++ el +d
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKSLAAELFDD 622
                  689*****************999644 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.071        19       5     119 ..     183     288 ..     179     299 .. 0.74
   2 !    8.9   0.0    0.0022      0.61       4      31 ..     598     625 ..     596     650 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.071
    PF09848.4   5 lvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakklekkkkkeavkkpssfinnlskaekkkpkedvvivDEAhrlltkkdqkekksgenqlkellkrak 119
                  ++ G +G GKt +   l++++    e+   + + g +     + + +++ +    ++e  ++++++++++    +++ +  ++++DE h++l  +  +  +  +n lk ll r +
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRI---VENDCPQSMRGIGLRTLDMSSLISGAK---YRGEFEERLKAVMKEVV---ESPLPGIILFIDEVHLVLGAGRTDGAMDAANILKPLLARGQ 288
                  788999999999999999999...566666666666666666777776666...56666667777777777...66667778889999999998888888888898888888855 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0022
    PF09848.4   4 ilvtGvaGtGKtvvalnllaeledseee 31 
                  +l  G  GtGKt++a +l+ael d+++ 
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDDSKS 625
                  56779*****************444433 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0066       1.8       6      23 ..     182     199 ..     177     216 .. 0.84
   2 ?    6.2   0.0     0.023       6.2       7      30 ..     599     622 ..     597     689 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0066
    PF13479.1   6 vliYGkpGiGKTslaktl 23 
                   +i G+pG+GKT l+  l
  MMETSP0890-20130614|30753_1 182 PVICGPPGVGKTALVEGL 199
                  589**********99887 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.023
    PF13479.1   7 liYGkpGiGKTslaktlpktlfld 30 
                  l+ G  G+GKT +ak+l   lf d
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDD 622
                  7889*************8888755 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.16        43      10      48 ..     165     202 ..     162     213 .. 0.85
   2 !    9.3   0.0    0.0031      0.84      29      51 ..     599     621 ..     570     629 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.16
   PF04851.10  10 eaienllesiekedekkrglivmaTGtGKTlvaasliar 48 
                  e i+++++++++  +k++ +i  + G+GKT +   l++r
  MMETSP0890-20130614|30753_1 165 EEIRRVIQILSRR-TKNNPVICGPPGVGKTALVEGLAQR 202
                  5689999999999.99**************987665555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0031
   PF04851.10  29 livmaTGtGKTlvaasliarlar 51 
                  l+   TGtGKTl+a sl+a+l+ 
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFD 621
                  66778************999985 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.026       7.2      36      70 ..     177     211 ..     157     225 .. 0.77
   2 ?   -0.3   0.0         2   5.5e+02     122     188 ..     220     286 ..     211     295 .. 0.71
   3 ?   -1.3   0.0         4   1.1e+03      98     132 ..     473     507 ..     459     592 .. 0.72
   4 ?    5.8   0.1     0.027       7.3      41      65 ..     598     622 ..     574     645 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.026
   PF01580.13  36 vkaphlLiaGatgsGKStflrtLilslaathtPee 70 
                  +   + +i+G +g GK+  +  L + +++   P+ 
  MMETSP0890-20130614|30753_1 177 RTKNNPVICGPPGVGKTALVEGLAQRIVENDCPQS 211
                  3344789****************999999877775 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 2
   PF01580.13 122 lkqlgvrsieeydgeiaevpldgfagrele.elpslvvivderaelrlaapkdssrrvedalsrlark 188
                  l++    s + y+ge+ e  +   ++   e +lp +++++de++ +  a   d  + + ++l+ l ++
  MMETSP0890-20130614|30753_1 220 LDMSSLISGAKYRGEFEERLKAV-MKEVVEsPLPGIILFIDEVHLVLGAGRTDGAMDAANILKPLLAR 286
                  44555555566888888855554.45555559**********99888888888777777777777666 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 4
   PF01580.13  98 atdpekalraleelvaemeeRyallkqlgvrsiee 132
                  ++d e+a+++  + + e+eeR a lk+  +++ ++
  MMETSP0890-20130614|30753_1 473 NQDFERAADLEYAAIPEVEERLAQLKANLAQQEAM 507
                  56788888888899999999998888776666555 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.027
   PF01580.13  41 lLiaGatgsGKStflrtLilslaat 65 
                   L +G+tg+GK+ + ++L ++l  +
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDD 622
                  699**************99998765 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.36        99       9      32 ..     172     197 ..     165     213 .. 0.70
   2 ?    2.2   0.0      0.34        94     127     169 ..     256     299 ..     236     303 .. 0.77
   3 ?    7.0   0.0     0.012       3.2      15      41 ..     596     622 ..     569     718 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.36
                  HHHH..SS-EEEEEC-TT---HHHHH CS
                  xxxx..xxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   9 plil..gggdvlvaaeTGsGKTlafl 32 
                  +++   ++++ +++++ G GKT+   
  MMETSP0890-20130614|30753_1 172 QILSrrTKNNPVICGPPGVGKTALVE 197
                  544442356789**********9876 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.34
                  EEECTHHHHHCTTTHH...HHHHHHHHSHHTTTSEEEEEESS-THH CS
                  xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24 127 lVlDEadrllsqgfsd...qlnqilqilcdgkrlqvivlSATlpkd 169
                  l +DE++ +l  g+ d   +  +il+ l  ++r q+ v+ AT +++
  MMETSP0890-20130614|30753_1 256 LFIDEVHLVLGAGRTDgamDAANILKPL--LARGQLRVIGATTDDE 299
                  679*************655555555555..4778888888998755 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.012
                  -EEEEEC-TT---HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24  15 gdvlvaaeTGsGKTlaflipvlqille 41 
                  g  l+++ TG+GKTl++   + + + +
  MMETSP0890-20130614|30753_1 596 GAFLLCGSTGTGKTLMAKSLAAELFDD 622
                  56789**********998777665544 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.7   4.6e+02      30      51 ..     186     206 ..     183     215 .. 0.83
   2 ?   -0.4   0.9       2.8   7.7e+02     139     184 ..     423     470 ..     374     512 .. 0.69
   3 !   11.4   0.0   0.00066      0.18      27      67 ..     599     638 ..     597     670 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 1.7
   PF01935.12  30 gsTGsGKSntvavLleellekk 51 
                  g  G+GK+ +v  L ++++ ++
  MMETSP0890-20130614|30753_1 186 GPPGVGKTALVEGLAQRIV-EN 206
                  666***************9.54 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 2.8
   PF01935.12 139 lssdepveklleelk..kekeelrklknqairrlldklerllrkggsf 184
                  ++++  ++ l+e+l+  +e+ + ++ + + +r l++kl+rl++k +  
  MMETSP0890-20130614|30753_1 423 ADVKLKIANLKEQLQplEEQWNQERYRADELRDLQEKLDRLKLKAQVA 470
                  444444555555555643344778888888888888888888777665 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00066
   PF01935.12  27 AilgsTGsGKSntvavLleellekkgatililDpHGEYgka 67 
                  +  gsTG+GK+  +++L +el  + ++ +  lD+ +EY+ a
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDM-SEYSEA 638
                  567*******************866666666776.466665 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0043       1.2       5      28 ..     183     210 ..     183     252 .. 0.68
   2 ?   -2.7   0.0       8.6   2.4e+03     128     204 ..     329     402 ..     307     450 .. 0.62
   3 ?    3.6   0.0       0.1        28       5      30 ..     599     624 ..     597     640 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0043
    PF08433.5   5 vltGlPssGKstvakeLakalee....e 28 
                  v++G P +GK+ +++ La+ + e    +
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVEndcpQ 210
                  79*****************999955541 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 8.6
    PF08433.5 128 elleaLiqRfEePdsknrWDsPlftvlsaeeklpldeil.kaliekkalkpnqatqskplaetnflqeLdketqevvk 204
                  ++l+ L +R+E+ +  +  Ds+l++  + +++     i   +l +k      +a  s++ +  +  +eLd+  ++v +
  MMETSP0890-20130614|30753_1 329 AILRGLRDRYESHHGVQILDSALVAAAQLSHR----YISgRFLPDKAIDLIDEAASSRRVQLDSKPEELDALERKVAA 402
                  56777778888888777777777776643333....332123333334444444444444555555555555555544 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.1
    PF08433.5   5 vltGlPssGKstvakeLakaleeegr 30 
                  +l+G   +GK+ +ak La +l +  +
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAELFDDSK 624
                  79****************99876444 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.6   1.8e+03     138     139 ..      85     100 ..      23     145 .. 0.42
   2 !   10.8   0.1   0.00089      0.24      19     139 ..     181     439 ..     164     510 .. 0.64
   3 ?    1.3   0.0      0.74     2e+02      19      78 ..     597     700 ..     576     789 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 6.6
    PF13086.1 138 k..............e 139
                  +              +
  MMETSP0890-20130614|30753_1  85 SfiaqdhlflalygeQ 100
                  1333333333333330 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00089
    PF13086.1  19 itliqGpPgtGKtttivelisql................................................................................................lsek.....seseakkkkrvLvcapsnaavDeilerlle.ldeegkkynpkivRigneaekihedlksvsleekleqklaeekaallkeiseeleelkeklek.......................................e 139
                    +i GpPg GKt  + +l +++                                                                                                +  +      +  +++ ++v v +ps  a   il+ l + ++++   + ++   + + +  +h  ++   l  k  + ++e  ++   ++ ++ eel++ ++k                                        
  MMETSP0890-20130614|30753_1 181 NPVICGPPGVGKTALVEGLAQRIvendcpqsmrgiglrtldmsslisgakyrgefeerlkavmkevvesplpgiilfidevhlvlgagrtdgamdaanilkpllargqlrvigattddeY--RkyieaDAAFERRFQKVQVGEPSIEATVAILRGLRDrYESHHGVQILDSALVAAAQ-LSHRYISGRFLPDKAIDLIDEAASSRRVQLDSKPEELDALERKvaaleieaislkrekdegskrrladvklkianlkeqlqpL 439
                  36899******************8888888888888888888888888888888888888888888888888888888888888877777777777777777777777666666655552..04455566677788889999999999999999988865555555555555555555.33555555555444544444442222233333333333333333335555555555433333333333333333222222221 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.74
    PF13086.1  19 itliqGpPgtGKtttivelisqllsek.....................................seseakkkkrvLvcapsnaavDeilerlle.......lde 78 
                    l+ G  gtGKt +  +l  +l++++                                     +e  +k++  vL+     +a  ++l+ ll+        d+
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKSLAAELFDDSksaltrldmseyseahsvarligsppgyvgfdqggqlTEAVRKSPYVVLLLDEIEKAHPNVLKVLLQlldegrlTDS 700
                  57889999*****9999999999655566666666666666666666677777777777777776777777777777777777777777777665445554444 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00091      0.25      33      58 ..     177     202 ..     143     240 .. 0.79
   2 ?    1.8   0.0      0.39   1.1e+02      39      59 ..     599     619 ..     588     667 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00091
                  CTTSBEEEE-------HHHHHHH--- CS
   PF03193.11  33 lkdktsvlvGqSGvGKSsLinallpe 58 
                   +++  v++G+ GvGK++L++ l+++
  MMETSP0890-20130614|30753_1 177 RTKNNPVICGPPGVGKTALVEGLAQR 202
                  3345679*************999876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.39
                  EEE-------HHHHHHH---- CS
   PF03193.11  39 vlvGqSGvGKSsLinallpel 59 
                  +l+G++G GK+ + ++l+ el
  MMETSP0890-20130614|30753_1 599 LLCGSTGTGKTLMAKSLAAEL 619
                  79*********9999998775 PP

>> PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.12        33       9      41 ..     173     205 ..     168     209 .. 0.85
   2 ?    8.5   0.0    0.0022      0.61      18      42 ..     598     622 ..     590     629 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.12
    PF10412.4   9 lpkesetqhilivGttGtGKtqalrelldqira 41 
                  +  ++ +++ +i+G  G GKt +++ l ++i +
  MMETSP0890-20130614|30753_1 173 ILSRRTKNNPVICGPPGVGKTALVEGLAQRIVE 205
                  55677888999****************998876 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0022
    PF10412.4  18 ilivGttGtGKtqalrelldqirar 42 
                  +l++G+tGtGKt + ++l +++   
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDD 622
                  89***************99887665 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.065        18      20      39 ..     184     203 ..     169     211 .. 0.82
   2 ?    7.1   0.1     0.013       3.6      18      40 ..     598     621 ..     586     628 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.065
   PF02367.12  20 LsGdlGaGKTtlvkglakgl 39 
                  + G+ G GKT lv gla+ +
  MMETSP0890-20130614|30753_1 184 ICGPPGVGKTALVEGLAQRI 203
                  45999************987 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.013
   PF02367.12  18 vlLsGdlGaGKTtlvkglakgl.g 40 
                  +lL G  G+GKT ++k la +l +
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELfD 621
                  789***************999844 PP

>> PF06309.6  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   0.00015     0.041      15      81 ..     555     623 ..     545     634 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00015
    PF06309.6  15 nleeLekdlekklfGqhlvkklvvksv.kaylenekpkkpL.vlsfhGwtGtGknfvaeiiaenlyrdG 81 
                  +l +L   l+++++Gq    +++  ++ ++     ++++pL ++ + G tGtGk  +a+ +a +l+ d 
  MMETSP0890-20130614|30753_1 555 RLLSLADRLKTRIVGQDESIAVIAAAIlRSRAGLGRANQPLgAFLLCGSTGTGKTLMAKSLAAELFDDS 623
                  67789999********9988888887636777788999999556789******************9874 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00097      0.27       3      28 ..     183     208 ..     181     218 .. 0.89
   2 ?    0.4   0.0       1.6   4.3e+02       2      23 ..     598     619 ..     597     625 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00097
                  EEE-------HHHHHHHHHH-...-- CS
   PF03266.10   3 fiTGepgvGKtTlvkkvlellksegv 28 
                  +i G+pgvGKt lv+ +++++ ++++
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVENDC 208
                  699****************9988765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 1.6
                  EEEE-------HHHHHHHHHH- CS
   PF03266.10   2 vfiTGepgvGKtTlvkkvlell 23 
                  +++ G+ g+GKt + k ++++l
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAEL 619
                  6799*********999998887 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.13        35       3      82 ..     183     242 ..     183     259 .. 0.65
   2 ?    6.9   0.0     0.018       4.9     259     286 ..     670     696 ..     597     717 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.13
    PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqi 82 
                  vi+Gp g+GK+ l + l+                   +         +       ++ ++  l++g +yr +fe   +++
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLA-------------------QRIVENDCPQSMRGIGLRTLDMS-SLISGAKYRGEFEERLKAV 242
                  89*************995...................44444444444444444444444.6666666666666655555 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.018
    PF13304.1 259 svlliDEpEngLHPkllrrliellkels 286
                   vll+DE+E   HP +l+ l++ll+e +
  MMETSP0890-20130614|30753_1 670 VVLLLDEIEKA-HPNVLKVLLQLLDEGR 696
                  79*********.************7654 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0095       2.6       4      22 ..     183     201 ..     181     213 .. 0.81
   2 ?    2.8   0.0      0.23        62       3      38 ..     598     633 ..     596     648 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0095
                  EEE-------HHHHHHHHC CS
   PF02492.14   4 vltGflGsGKTtLleklle 22 
                  v+ G++G GKT+L+e l +
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQ 201
                  799***********99884 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.23
                  EEEE-------HHHHHHHHCHS---S-EEEEES--- CS
   PF02492.14   3 tvltGflGsGKTtLleklleknreglkiaVivndfg 38 
                  + l G+ G GKT + ++l ++  ++ k a    d++
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDDSKSALTRLDMS 633
                  6799********999888875556666666555555 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.09        25       5      28 ..     183     206 ..     179     221 .. 0.87
   2 ?    6.0   0.0     0.023       6.4       4      31 ..     598     625 ..     595     634 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.09
                  EEE-------TTTHHHHHHHHHHT CS
   PF00448.17   5 llvGlqGaGKTTtlaKLAallkke 28 
                  +++G+ G+GKT  +  LA+++ ++
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQRIVEN 206
                  799***************998776 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.023
                  EEEE-------TTTHHHHHHHHHHT--- CS
   PF00448.17   4 illvGlqGaGKTTtlaKLAallkkegkk 31 
                  +ll+G +G+GKT  +  LAa l ++ k+
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDDSKS 625
                  79**********9999999988777655 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.8     0.099        27       3      38 ..     181     228 ..     179     549 .. 0.62
   2 ?    3.9   0.0     0.087        24       4      61 ..     598     660 ..     596     756 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.099
    PF12846.2   3 ntlilGppGsGKSvllkklvlqlla.......rgprvviiDp.....g 38 
                  n +i+GppG GK+ l+  l+ + ++       rg  ++ +D+     g
  MMETSP0890-20130614|30753_1 181 NPVICGPPGVGKTALVEGLAQRIVEndcpqsmRGIGLRTLDMsslisG 228
                  5589************99999888844455554455555566555551 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.087
    PF12846.2   4 tlilGppGsGKSvllkklvlqlla.rgprvviiDp..ggeysglaralgg..qvidlgegkgi 61 
                  +l++G +G GK+  +k+l+ +l       ++ +D+    e+ + ar++g+   ++ +++g+  
  MMETSP0890-20130614|30753_1 598 FLLCGSTGTGKTLMAKSLAAELFDdSKSALTRLDMseYSEAHSVARLIGSppGYVGFDQGGQL 660
                  789***************766655233444444553223333555555422244444444444 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0072         2       3      86 ..     183     259 ..     181     295 .. 0.70
   2 ?    1.2   0.0       1.1   3.1e+02       4      98 ..     600     684 ..     597     716 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0072
                  EEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTEEEEEE---SSSHHHHHHHHH.HHHHHHHHH..CTSSEEEEEEE CS
   PF01926.18   3 aivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkekiilvDtPGiiegasedkeie.gikkylekv..eradvlllvvd 86 
                  +i G p vGK++L+  L +  +   +d p+  r i            +D+  +i+ga+ + e e ++k ++++v    + +++l +d
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVEGLAQ--RIVENDCPQSMRGIGL--------RTLDMSSLISGAKYRGEFEeRLKAVMKEVveSPLPGIILFID 259
                  699**************94..5467778999999933........468899988887777754435555555552333355777777 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 1.1
                  EE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETTE.EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEE.TTSHHHHHHHHH CS
   PF01926.18   4 ivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkkek.iilvDtPGiiegasedkeiegikkylekveradvlllvvd.asavlkeadkel 98 
                  + G + +GK+ + ++L   +    s+ + t +d+ ++ e+  +    l+  P    g       ++  + +e+v+++ +++l++d +++    a  ++
  MMETSP0890-20130614|30753_1 600 LCGSTGTGKTLMAKSLAA-ELFDDSKSALTRLDMsEYSEA--HSvARLIGSPPGYVG------FDQGGQLTEAVRKSPYVVLLLDeIEK----AHPNV 684
                  678888888888888874.365666666666666444332..111235554432222......22233467888888888888883332....22333 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.04        11      22      43 ..     178     199 ..     169     206 .. 0.82
   2 ?    3.3   0.0      0.19        52      23      37 ..     596     609 ..     590     623 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.04
    PF13555.1  22 kgkntlltGasGsGKSTllDAi 43 
                  +++n ++ G+ G+GK+ l+  +
  MMETSP0890-20130614|30753_1 178 TKNNPVICGPPGVGKTALVEGL 199
                  446889************9876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.19
    PF13555.1  23 gkntlltGasGsGKS 37 
                  g ++ll G +G GK+
  MMETSP0890-20130614|30753_1 596 G-AFLLCGSTGTGKT 609
                  5.79**********6 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.0    0.0014      0.39     205     292 ..     380     467 ..     370     508 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0014
    PF08317.6 205 ecdseeleklreeLssleekieekr.kkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeisklkekvslleklt 292
                  +  + +l +  eeL +le k+++ + + ++ ++e+ + +k  ++++k k+++l+e+++ +e++ +++r ++a+e+++l+ek++ l+ ++
  MMETSP0890-20130614|30753_1 380 SSRRVQLDSKPEELDALERKVAALEiEAISLKREKDEGSKRRLADVKLKIANLKEQLQPLEEQWNQER-YRADELRDLQEKLDRLKLKA 467
                  55566667777888888888887762455666666666888999999999999999999999998876.99999999999999998765 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.1     0.002      0.54      28     136 ..     388     498 ..     372     540 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.002
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXX.....XXXXXXXX CS
   PF01496.14  28 nevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelke...veeslesLekelneleelrnvlreekefleenk.........veelrelssldeefkalr 136
                   ++ +ld +erk++ le e+  +k e  +  +++ ++ + ++++l+e+l+ lee+ ++     + l+ L+++l+ l+ +++v r +++f  +++         +          e  ++l+
  MMETSP0890-20130614|30753_1 388 SKPEELDALERKVAALEIEAISLKREKDEGSKRRLADVKLKIANLKEQLQPLEEQWNQeryRADELRDLQEKLDRLKLKAQVARRNQDFERAADleyaaipevE----------ERLAQLK 498
                  567889999*******999999999988777777777788*************988761115678889999******999999999999999655555543331..........3333322 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.98   2.7e+02      23      37 ..     183     197 ..     176     207 .. 0.83
   2 ?   -0.6   0.4       1.9   5.1e+02      74     130 ..     393     459 ..     375     476 .. 0.68
   3 ?    8.1   0.0    0.0041       1.1      21      38 ..     597     614 ..     563     622 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.98
    PF06745.8  23 litGepGtGKtifal 37 
                   i+G pG GKt +++
  MMETSP0890-20130614|30753_1 183 VICGPPGVGKTALVE 197
                  69*********9875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.9
    PF06745.8  74 lekleeegklaiidasesaeeea..........eedleelieklaeaikeikakrvviDsitglyee 130
                  l++le++     i+a + ++e++          + ++ +l+e+l+   ++ +++r   D +  l+e+
  MMETSP0890-20130614|30753_1 393 LDALERKVAALEIEAISLKREKDegskrrladvKLKIANLKEQLQPLEEQWNQERYRADELRDLQEK 459
                  5556666544444444443333346677888889999999999999999999999999999998443 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0041
    PF06745.8  21 vvlitGepGtGKtifalq 38 
                  + l++G++GtGKt++a+ 
  MMETSP0890-20130614|30753_1 597 AFLLCGSTGTGKTLMAKS 614
                  5799***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1002  (0.0732885); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                       107  (0.00782621); expected 13.7 (0.001)
Passed Fwd filter:                        55  (0.00402282); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 1.90u 0.46s 00:00:02.36 Elapsed: 00:00:01.28
# Mc/sec: 1608.18
//
Query:       MMETSP0890-20130614|30757_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.4  14.4     0.0016   18.3  10.0    1.1  1  PF01034.15 Syndecan domain
  ------ inclusion threshold ------
      0.011   14.0   0.1      0.019   13.3   0.1    1.3  1  PF05448.7  Acetyl xylan esterase (AXE1)
        7.4    5.0  10.3        9.8    4.6   7.2    1.1  1  PF10510.4  Phosphatidylinositol-glycan biosynthesis class S protein


Domain annotation for each model (and alignments):
>> PF01034.15  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  10.0   3.4e-07    0.0016      84     232 ..      21     176 ..       7     294 .. 0.56

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.4e-07
   PF01034.15  84 ssspssetttaststktsstvstt..ttattsPsetateeatttvatetatevqsaaepeqpttpatded.ldtevetseddstptdedeeddeedpeddnkpetteketeelsttlpevvesgev.......elattneadnevpasdgssddtedde 232
                  + + +++ tt+++ tk++st+  t  ++  t+P + ++++  t +++et++    ++e +++ + + +e+ +++ v+++ ++++++de++ ++e  +e+d+   + ek+++  +++ +  +e+++        ++++++e++++v++++   d++++ +
  MMETSP0890-20130614|30757_1  21 EPDHRVTGTTSQDVTKKKSTTINTveENLPTEPATDQAAAEETLSNQETQDDNGIETESATEREASNAEQeEEQSVQKEVEVQEKEDEEKLKPE--EEEDESMPQDEKDVKL-PQEEADREEETKPededfaeFVSADEEEEKKVDDKEAMPDEEIQID 176
                  4455677788887777777665444444456666665555555555555554444444443333333333022333333333333333333333..3333333333334422.2222222222222223333355555555566665555555555444 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.1e-06     0.019       5      65 ..     129     189 ..     126     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.1e-06
                  SS-HHHHCT--------TTHHHHHHHHHHHHHTS----EEEEE--S----EEEEEEEEE-- CS
    PF05448.7   5 dlpleelkkYrgekeapeDFdefWkkeleelrkldleveleeadfelkavevydltfegvg 65 
                   lp+ee  + + +k+++eDF+ef +   ee +k+d +  + +++++++  ++y++ f  + 
  MMETSP0890-20130614|30757_1 129 KLPQEEADREEETKPEDEDFAEFVSADEEEEKKVDDKEAMPDEEIQIDPSAAYRIKFVPLD 189
                  578888888899999*****************************************97665 PP

>> PF10510.4  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.2    0.0022       9.8      60     206 ..      37     190 ..      18     195 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0022
    PF10510.4  60 eaeallkevqkkldqllkksqlawslelklleekvqeeseasessaess..lvvrlaeeaeaestsselssekteldvviseesvsspdavstllaaviaallvdkvfkeekasisqilstsskseaeina........rsvkyspnyhLsfsLLne 206
                  ++ +  ++v+++l +  +++q a++  l  +e+++++  e + s++e +     + +e+  ++  ++++++++++l++  +e++++++d+++++l++  a+  +++ +k e++ +++++s+++++e++  +          +  s  y++ f+ L  
  MMETSP0890-20130614|30757_1  37 KKSTTINTVEENLPTEPATDQAAAEETLSNQETQDDNGIETE-SATEREasNAEQEEEQSVQKEVEVQEKEDEEKLKPEEEEDESMPQDEKDVKLPQEEAD--REEETKPEDEDFAEFVSADEEEEKKVDDkeampdeeIQIDPSAAYRIKFVPLDD 190
                  333445667777776544444444444444444433333333.3333233223333334445567888899999999999999******999999997666..57899************9999998877788889888888888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1597  (0.116808); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                       124  (0.00906963); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.44s 00:00:01.51 Elapsed: 00:00:01.22
# Mc/sec: 618.73
//
Query:       MMETSP0890-20130614|30751_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-49  166.5   0.1    1.5e-48  165.4   0.1    1.6  1  PF03619.11 Organic solute transporter Ostalpha
  ------ inclusion threshold ------
       0.12   11.7   0.8       0.24   10.8   0.6    1.4  1  PF10624.4  Plasmid conjugative transfer entry exclusion protein TraS


Domain annotation for each model (and alignments):
>> PF03619.11  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.1   2.1e-52   1.5e-48      38     272 ..       2     313 ..       1     315 [. 0.84

  Alignments for each domain:
  == domain 1    score: 165.4 bits;  conditional E-value: 2.1e-52
   PF03619.11  38 liirillmvPiYavesflsllfskaaiylelirdcYeafviytFlslliaylggee......eiievlekkkkiehslpll......esvlllkt......................................................................kaldpeflkaiklgvlqyvvlkpilallalileafgvygegsfslk.......sgylyltiilniSvslaLYsLvlFykalkeeLapikpllKflciKliiFlsfWQgiilsvlsslglikkseakeeeeelkaaiqnlliciEmlifaiahlyaFsvk 272
                  +i+ +l+m PiY+  s+lsll++ aa  l+++rd Yea++i++F s+l++ +g ++       i++ l+  ++ +  + ++      +                                                                             ka +++f++ + ++++q+v++kp +a+++ +l+a +  ++++ sl+       +  + l ii niSv++a+  L+  y+a++++La  +p++Kf+++K i+F++fWQg+i+ ++++++ ++++       +++  +qn+lic+Em+i++++h+ +Fs +
  MMETSP0890-20130614|30751_1   2 KILTLLWMPPIYSACSWLSLLYPAAAPGLNMVRDGYEAYTIWAFGSFLLSTVGDDShrphvvGILRRLSLSPTRNSNFQMFnskqqnH------EsrpphmekqgesnqiksyttpttqnlplmyapaprtqaeteynalfervvaklkddgdalprafwppcgrKAEARSFVRQCTFATMQFVLIKPTIAVASYVLTAAQNDSNSDRSLSskrdwidQTRMALFIIDNISVTIAFTGLLKVYHAVAHHLADRNPWPKFCSVKGIVFITFWQGVIIWIMTRTERLNSD------VDIADTVQNFLICVEMFIASVVHIHTFSPD 313
                  5899**************************************************7755655556666664444455555544444430......14556666666677777777788899999999999***********************************9999*****************************99988776666554111111145667789********************************************************999873......468889*********************865 PP

>> PF10624.4  Plasmid conjugative transfer entry exclusion protein TraS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   3.5e-05      0.24       9      53 ..     234     281 ..     227     310 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.5e-05
    PF10624.4   9 lvtvvqfiacylae...wgvaetviillfvllwqglfiwlfiqirkkr 53 
                  l+ v + +a +la+   w    +v  ++f+ +wqg++iw++++  + +
  MMETSP0890-20130614|30751_1 234 LLKVYHAVAHHLADrnpWPKFCSVKGIVFITFWQGVIIWIMTRTERLN 281
                  667777788888876667788888889*************98765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:01.10
# Mc/sec: 1132.82
//
Query:       MMETSP0890-20130614|30766_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.29s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 296.02
//
Query:       MMETSP0890-20130614|30779_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.6   0.3        0.5   10.3   0.0    3.0  3  PF11260.3  Major ampullate spidroin 1 and 2
      0.027   14.3   7.3       0.65    9.8   1.0    2.8  2  PF03245.8  Bacteriophage lysis protein
      0.034   13.6   5.1       0.16   11.4   0.3    2.3  2  PF04156.9  IncA protein
      0.063   12.7   0.1       0.13   11.6   0.1    1.5  1  PF10384.4  Centromere protein Scm3
      0.099   12.4   8.1       0.45   10.2   1.0    2.4  2  PF11559.3  Afadin- and alpha -actinin-Binding
       0.12   12.0   3.8        1.9    8.2   0.9    2.5  2  PF01920.15 Prefoldin subunit
       0.35   10.5   6.5       0.41   10.3   0.4    2.7  2  PF05524.8  PEP-utilising enzyme, N-terminal
          1    9.1   5.1        3.2    7.6   0.1    3.0  3  PF05377.6  Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> PF11260.3  Major ampullate spidroin 1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.9   6.7e+03      49      60 ..      12      23 ..       5      36 .. 0.67
   2 ?    0.5   0.0      0.34   5.8e+02      27      51 ..     105     129 ..      60     131 .. 0.82
   3 ?   10.3   0.0   0.00029       0.5      10      47 ..     211     248 ..     208     253 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.9
                 .TT---HHHHHH CS
    PF11260.3 49 pglsscdvlvqv 60
                 +g ++++v+vq+
  MMETSP0890-20130614|30779_1 12 KGGAGAEVIVQA 23
                 556667777775 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.34
                  ---SSHHHHHHHHHHHHH-TTS.TT CS
    PF11260.3  27 alnvaalsnvissvvsqvsasnpgl 51 
                  ++++a+l n++++  +q+s ++++l
  MMETSP0890-20130614|30779_1 105 ETEIASLENALNDSQRQLSIAQHSL 129
                  6788999999999999998777665 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00029
                  HHHHHHHHHHHHHHHH----SSHHHHHHHHHHHHH-TT CS
    PF11260.3  10 sassRvssavsslvsagalnvaalsnvissvvsqvsas 47 
                   a++R++s+ s+++   + ++++l ++is + +qv+  
  MMETSP0890-20130614|30779_1 211 RAEARLKSVSSQIITRYEAELEKLRSIISTLKAQVQDG 248
                  699********************************976 PP

>> PF03245.8  Bacteriophage lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0032       5.4      31      70 ..      88     127 ..      67     141 .. 0.80
   2 ?    9.8   1.0   0.00038      0.65      34      64 ..     221     251 ..     204     306 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0032
    PF03245.8  31 ravaeldakhteeLadaksendrLradvaaGrrRLrvkat 70 
                     ae +++  +  ++ ++e+++L++++ + +r+L+++  
  MMETSP0890-20130614|30779_1  88 EIAAEYEERLVKRETEHETEIASLENALNDSQRQLSIAQH 127
                  3347888888888899999****************99864 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00038
    PF03245.8  34 aeldakhteeLadaksendrLradvaaGrrR 64 
                  +++ +++  eL++ +s + +L+a+v++G+rR
  MMETSP0890-20130614|30779_1 221 SQIITRYEAELEKLRSIISTLKAQVQDGHRR 251
                  56779************************99 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3     0.014        25      89     126 ..     100     137 ..      60     148 .. 0.75
   2 ?   11.4   0.3   9.3e-05      0.16      81     134 ..     215     269 ..     195     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.014
    PF04156.9  89 qlseleeeleqleerlaeleseledleedlellqeelk 126
                  + +e e+e+  le+ l++++++l+  +  le ++++++
  MMETSP0890-20130614|30779_1 100 RETEHETEIASLENALNDSQRQLSIAQHSLERILGDRE 137
                  44455666777777777777777766666666666555 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 9.3e-05
    PF04156.9  81 eelsesesqlseleeeleqleerlaeleseledleedlellq.eelksleerles 134
                  + +s s+++++++e ele+l++ +++l+++++d  + + ll+ e+++ l + + s
  MMETSP0890-20130614|30779_1 215 RLKSVSSQIITRYEAELEKLRSIISTLKAQVQDGHRRRCLLEdELRRTLLKGMVS 269
                  456889999**********************999999999996666666666555 PP

>> PF10384.4  Centromere protein Scm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.7e-05      0.13       6      31 ..     208     232 ..     206     238 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.7e-05
                  HHHHHHHHHHHHHHHHHHHHHSG-TC CS
    PF10384.4   6 lrkasdqrlkrrwesIieKYsqidde 31 
                   ++++++rlk++ ++Ii +Y+  + e
  MMETSP0890-20130614|30779_1 208 VHRRAEARLKSVSSQIITRYEA-ELE 232
                  599*****************98.555 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.5    0.0076        13      60      94 ..     100     127 ..      80     140 .. 0.54
   2 ?   10.2   1.0   0.00026      0.45      49      97 ..     212     260 ..     207     265 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0076
    PF11559.3  60 tlrkleaeierlqskierlktqleqlerelallqe 94 
                  +  +        +++i+ l++ l +++r+l+ +q 
  MMETSP0890-20130614|30779_1 100 RETEH-------ETEIASLENALNDSQRQLSIAQH 127
                  22222.......33555555555555555553332 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00026
    PF11559.3  49 rdleqresleetlrkleaeierlqskierlktqleqlerelallqeker 97 
                   +++ +  +++ + + eae+e+l+s i+ lk q+++ +r+ +ll+ + r
  MMETSP0890-20130614|30779_1 212 AEARLKSVSSQIITRYEAELEKLRSIISTLKAQVQDGHRRRCLLEDELR 260
                  34444455566677899*********************99999988776 PP

>> PF01920.15  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.9    0.0011       1.9      61     105 ..      91     135 ..      88     136 .. 0.90
   2 ?    3.6   0.0     0.029        50      70     100 ..     215     246 ..     201     251 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0011
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---- CS
   PF01920.15  61 eevkeeLeerketlekeiktlekqleklekeleelkeelykklqs 105
                  +e +e+L +r+ + e+ei +le+ l + +++l+  + +l   l++
  MMETSP0890-20130614|30779_1  91 AEYEERLVKRETEHETEIASLENALNDSQRQLSIAQHSLERILGD 135
                  57899****************************999999887765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.029
                  HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF01920.15  70 rketle.keiktlekqleklekeleelkeely 100
                  r+++++ + i+++e +lekl+  ++ lk++++
  MMETSP0890-20130614|30779_1 215 RLKSVSsQIITRYEAELEKLRSIISTLKAQVQ 246
                  54444314467777777777777777777665 PP

>> PF05524.8  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00024      0.41      24      67 ..      92     138 ..      78     158 .. 0.75
   2 ?    2.4   0.5     0.067   1.1e+02      21      57 ..     214     251 ..     205     299 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00024
    PF05524.8  24 evperea...sdveaEierleaAlekareeleelaeqlseelgaeea 67 
                  e++er +   ++ e+Ei+ le+Al+ ++++l+  +++l++ lg+ e+
  MMETSP0890-20130614|30779_1  92 EYEERLVkreTEHETEIASLENALNDSQRQLSIAQHSLERILGDRET 138
                  444444444468999****************9999999888876665 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.067
    PF05524.8  21 ee.aevpereasdveaEierleaAlekareeleelaeq 57 
                  ++ ++v+ + ++  eaE+e+l++ + ++++++++ +++
  MMETSP0890-20130614|30779_1 214 ARlKSVSSQIITRYEAELEKLRSIISTLKAQVQDGHRR 251
                  33556666666888888888888888888888665554 PP

>> PF05377.6  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.084   1.4e+02       4      33 ..     103     132 ..     100     139 .. 0.85
   2 ?    7.6   0.1    0.0018       3.2       6      39 ..     213     247 ..     211     248 .. 0.71
   3 ?   -1.3   0.0       1.1   1.9e+03      16      32 ..     289     305 ..     286     307 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.084
    PF05377.6   4 eLEnklsklstvvatvrkeleelsksveki 33 
                  e E+++ +l+ +++  +++l+  + s+e+i
  MMETSP0890-20130614|30779_1 103 EHETEIASLENALNDSQRQLSIAQHSLERI 132
                  668999999999999999999999888887 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0018
    PF05377.6   6 Enklsklstv.vatvrkeleelsksvekikenvkd 39 
                  E +l ++s++ ++  ++ele l++ +  +k +v+d
  MMETSP0890-20130614|30779_1 213 EARLKSVSSQiITRYEAELEKLRSIISTLKAQVQD 247
                  55666777776677778888888888888777776 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.1
    PF05377.6  16 vatvrkeleelsksvek 32 
                   at+  + e+l +++e+
  MMETSP0890-20130614|30779_1 289 AATIDHQQEQLVSTIEQ 305
                  57999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 1291.79
//
Query:       MMETSP0890-20130614|30789_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       142  (0.0103862); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.83
# Mc/sec: 153.02
//
Query:       MMETSP0890-20130614|30797_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-08   32.7   0.0    3.9e-08   32.5   0.0    1.2  1  PF13475.1 Domain of unknown function (DUF4116)
  ------ inclusion threshold ------
      0.095   12.3   0.1       0.13   11.9   0.0    1.2  1  PF05703.6 Auxin canalisation


Domain annotation for each model (and alignments):
>> PF13475.1  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   5.6e-12   3.9e-08      13      48 ..       2      37 ..       1      45 [. 0.94

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 5.6e-12
    PF13475.1 13 gsalkylseeLknDkeivlkAvkqngsalsyaseeL 48
                 g al+++ + Lk D++ivl+Av++n +a+ +as + 
  MMETSP0890-20130614|30797_1  2 GLALEFCADHLKADRDIVLAAVQSNQKAFFFASSSV 37
                 789*****************************9765 PP

>> PF05703.6  Auxin canalisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.13     179     211 ..       9      50 ..       5      53 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
    PF05703.6 179 AesaGAdrdqvasavks........avdvrspgdll.tLTAa 211
                  A+++ Adrd v++av+s        +  v+s+ d+l tLTA+
  MMETSP0890-20130614|30797_1   9 ADHLKADRDIVLAAVQSnqkafffaSSSVKSHHDILtTLTAS 50 
                  89999***********9444333334579*****97369998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.71
# Mc/sec: 199.13
//
Query:       MMETSP0890-20130614|30808_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-20   71.4  21.1    5.8e-08   32.0   0.1    4.6  5  PF12799.2  Leucine Rich repeats (2 copies)
    1.2e-11   44.0  21.3    6.7e-05   22.4   0.4    4.0  6  PF13855.1  Leucine rich repeat
      2e-09   36.0   6.5      0.044   13.6   0.0    6.0  6  PF00560.28 Leucine Rich Repeat
    8.2e-07   28.1   7.3        0.8   10.0   0.0    5.9  5  PF13504.1  Leucine rich repeat
    7.9e-05   22.2   4.1        8.2    6.7   0.0    5.9  6  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
        2.6    8.2   7.9         16    5.6   2.7    2.5  2  PF09026.5  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   6.1e-06     0.014      12      40 ..     203     231 ..     191     238 .. 0.79
   2 !   18.8   0.1   3.5e-07    0.0008       1      40 [.     215     253 ..     215     257 .. 0.93
   3 !   24.1   1.3   7.6e-09   1.7e-05       2      42 ..     259     299 ..     258     300 .. 0.95
   4 !   23.0   0.0   1.8e-08     4e-05      12      41 ..     316     345 ..     307     348 .. 0.87
   5 !   32.0   0.1   2.6e-11   5.8e-08       2      42 ..     329     369 ..     328     374 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.1e-06
    PF12799.2  12 nIkdlppelanLpnLktLnLsnNpisdls 40 
                  +++ l+ +l++L+nL+ L +s+N ++ l+
  MMETSP0890-20130614|30808_1 203 RLTILSSQLSRLTNLTILIVSGNGLEALP 231
                  47778899***************999764 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 3.5e-07
    PF12799.2   1 tnLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdls 40 
                  tnL+ L  s+N ++ lp  + +Lp Lk+L+ s+N i  l+
  MMETSP0890-20130614|30808_1 215 TNLTILIVSGNGLEALPDCIEQLP-LKSLDASRNAIRTLP 253
                  8***********************.*********998776 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 7.6e-09
    PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNp.isdlsaL 42 
                   Le Ld + N+++d++  l+ + nL +L L+nNp +s+ls+L
  MMETSP0890-20130614|30808_1 259 TLEALDMAVNQLSDIES-LSECANLVSLALDNNPdLSSLSPL 299
                  7999*************.***************989*****9 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 1.8e-08
    PF12799.2  12 nIkdlppelanLpnLktLnLsnNpisdlsa 41 
                   I +l+p l++L +L+tL Ls+Np+++l++
  MMETSP0890-20130614|30808_1 316 AIAELDPGLGSLVKLETLILSHNPFTELPP 345
                  5899***********************964 PP

  == domain 5    score: 32.0 bits;  conditional E-value: 2.6e-11
    PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsaL 42 
                  +Le+L Ls+N+ ++lpp la +++Lk++ +++++isd ++L
  MMETSP0890-20130614|30808_1 329 KLETLILSHNPFTELPPALAACKKLKLIKVDSTKISDNKVL 369
                  8************************************9887 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.8   4.3e-06    0.0097       2      61 .]     192     249 ..     191     249 .. 0.87
   2 !   18.0   0.1   6.9e-07    0.0016       1      42 [.     215     254 ..     215     265 .. 0.89
   3 !   15.1   0.2   5.5e-06     0.013       3      59 ..     239     290 ..     238     291 .. 0.90
   4 !   10.5   0.2   0.00015      0.35       2      58 ..     259     314 ..     258     317 .. 0.78
   5 !   22.4   0.4   2.9e-08   6.7e-05       2      60 ..     281     339 ..     280     340 .. 0.96
   6 !   14.0   0.0   1.2e-05     0.028       2      38 ..     329     364 ..     328     366 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.3e-06
    PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +L +L+L+ + rl+ ++ + +++l+nL+ L  sgn l+ +++ ++++L  L++L+ s N +
  MMETSP0890-20130614|30808_1 192 SLNRLQLKLSpRLTILS-SQLSRLTNLTILIVSGNGLEALPD-CIEQL-PLKSLDASRNAI 249
                  68999999776999998.799****************99987.77999.799999999976 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 6.9e-07
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp 42 
                  +nL+ L++s+N l+ +pd + ++l+ Lk+Ld s+n++ ++++
  MMETSP0890-20130614|30808_1 215 TNLTILIVSGNGLEALPD-CIEQLP-LKSLDASRNAIRTLPK 254
                  69**************95.99****.*************986 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 5.5e-06
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  Lk+Ld s+N ++++p+   k    L+ Ld   n l+ i+  +++ + +L +L L++N
  MMETSP0890-20130614|30808_1 239 LKSLDASRNAIRTLPKMPHK---TLEALDMAVNQLSDIE--SLSECANLVSLALDNN 290
                  9**************86655...589************7..69***********999 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00015
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnl.ksispeafkgLpsLreLnLsg 58 
                   L+ Ld   N l++i+  +++ + nL +L L +n   +s+sp  f++++++ +++ s+
  MMETSP0890-20130614|30808_1 259 TLEALDMAVNQLSDIE--SLSECANLVSLALDNNPDlSSLSPLPFDQMKRIISISASH 314
                  5788888889999998..8999999999999966665899988888888877776665 PP

  == domain 5    score: 22.4 bits;  conditional E-value: 2.9e-08
    PF13855.1   2 nLkeLdLsnN.rlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNr 60 
                  nL +L L+nN +l+++++  F ++++  +++ s+ ++ +++p++  +L++L+ L Ls+N+
  MMETSP0890-20130614|30808_1 281 NLVSLALDNNpDLSSLSPLPFDQMKRIISISASHAAIAELDPGL-GSLVKLETLILSHNP 339
                  899***************************************65.**************7 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 1.2e-05
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk 38 
                  +L++L+Ls+N ++++p+ a+  +++Lk ++  +++++
  MMETSP0890-20130614|30808_1 329 KLETLILSHNPFTELPP-ALAACKKLKLIKVDSTKIS 364
                  69999999999999999.8888999999999998886 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         6   1.4e+04      10      17 ..     194     202 ..     192     213 .. 0.56
   2 !    8.6   0.0   0.00086         2       1      21 [.     216     236 ..     216     237 .. 0.88
   3 ?    4.3   0.0     0.022        50       2      17 ..     239     254 ..     238     257 .. 0.91
   4 ?    3.3   0.0     0.049   1.1e+02       2      21 ..     260     278 ..     259     279 .. 0.86
   5 ?    4.4   0.2     0.021        49       1      19 [.     281     301 ..     281     304 .. 0.86
   6 !   13.6   0.0   1.9e-05     0.044       1      21 [.     329     349 ..     329     350 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6
                  SBCB.CHHH CS
   PF00560.28  10 Nnlt.slpp 17 
                  N+l+ +l+p
  MMETSP0890-20130614|30808_1 194 NRLQlKLSP 202
                  455544444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00086
                  TESEEEETSSBCBCHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnltslppslsn 21 
                  nL++L +sgN l+ lp+ +++
  MMETSP0890-20130614|30808_1 216 NLTILIVSGNGLEALPDCIEQ 236
                  8***************97665 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.022
                  ESEEEETSSBCBCHHH CS
   PF00560.28   2 LeeLdLsgNnltslpp 17 
                  L++Ld s+N + +lp+
  MMETSP0890-20130614|30808_1 239 LKSLDASRNAIRTLPK 254
                  89**********9996 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.049
                  ESEEEETSSBCBCHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnltslppslsn 21 
                  Le Ld+  N+l+++ + ls 
  MMETSP0890-20130614|30808_1 260 LEALDMAVNQLSDIES-LSE 278
                  999**********998.765 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.021
                  TESEEEETSS.BCBCHHHH.H CS
   PF00560.28   1 nLeeLdLsgN.nltslpps.l 19 
                  nL +L L++N  l+sl+p  +
  MMETSP0890-20130614|30808_1 281 NLVSLALDNNpDLSSLSPLpF 301
                  8999***********999666 PP

  == domain 6    score: 13.6 bits;  conditional E-value: 1.9e-05
                  TESEEEETSSBCBCHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnltslppslsn 21 
                  +Le+L Ls+N++t+lpp l +
  MMETSP0890-20130614|30808_1 329 KLETLILSHNPFTELPPALAA 349
                  69**************98765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00085       1.9       1      17 []     215     231 ..     212     231 .. 0.90
   2 ?    4.3   0.0     0.027        62       3      17 .]     239     253 ..     239     253 .. 0.96
   3 ?    0.1   0.0       0.7   1.6e+03       2      16 ..     259     273 ..     258     277 .. 0.80
   4 ?    2.9   0.2     0.082   1.9e+02       2      16 ..     281     296 ..     280     299 .. 0.89
   5 !   10.0   0.0   0.00035       0.8       2      17 .]     329     344 ..     328     344 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00085
    PF13504.1   1 pnLkeLdLsgnrLtsLP 17 
                  +nL+ L +sgn+L+ LP
  MMETSP0890-20130614|30808_1 215 TNLTILIVSGNGLEALP 231
                  68899999*******99 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.027
    PF13504.1   3 LkeLdLsgnrLtsLP 17 
                  Lk Ld s+n + +LP
  MMETSP0890-20130614|30808_1 239 LKSLDASRNAIRTLP 253
                  89************9 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.7
    PF13504.1   2 nLkeLdLsgnrLtsL 16 
                   L+ Ld + n+L ++
  MMETSP0890-20130614|30808_1 259 TLEALDMAVNQLSDI 273
                  58999*999998764 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.082
    PF13504.1   2 nLkeLdLsgnr.LtsL 16 
                  nL  L L +n+ L sL
  MMETSP0890-20130614|30808_1 281 NLVSLALDNNPdLSSL 296
                  8999******999998 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00035
    PF13504.1   2 nLkeLdLsgnrLtsLP 17 
                  +L++L Ls+n++t+LP
  MMETSP0890-20130614|30808_1 329 KLETLILSHNPFTELP 344
                  69*************9 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018        42       1      14 [.     214     227 ..     214     231 .. 0.90
   2 ?    0.8   0.0      0.28   6.3e+02       4      14 ..     239     249 ..     238     252 .. 0.89
   3 ?    4.1   0.0     0.024        54       2      17 ..     258     273 ..     257     281 .. 0.78
   4 ?    0.4   0.1      0.38   8.7e+02       1      14 [.     279     293 ..     279     298 .. 0.80
   5 !    6.7   0.0    0.0036       8.2       3      16 ..     329     342 ..     327     349 .. 0.85
   6 ?   -0.4   0.0      0.71   1.6e+03       1      17 [.     350     366 ..     350     373 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.018
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l+nLt L +s+N++
  MMETSP0890-20130614|30808_1 214 LTNLTILIVSGNGL 227
                  69**********98 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.28
    PF13516.1   4 LtsLdLsnNqi 14 
                  L+sLd s+N i
  MMETSP0890-20130614|30808_1 239 LKSLDASRNAI 249
                  89*******98 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.024
    PF13516.1   2 knLtsLdLsnNqigde 17 
                  k+L+ Ld+  Nq++d+
  MMETSP0890-20130614|30808_1 258 KTLEALDMAVNQLSDI 273
                  78************94 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.38
    PF13516.1   1 lknLtsLdLsnNq.i 14 
                  + nL sL L nN+ +
  MMETSP0890-20130614|30808_1 279 CANLVSLALDNNPdL 293
                  7799***99999745 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0036
    PF13516.1   3 nLtsLdLsnNqigd 16 
                  +L++L Ls+N+++ 
  MMETSP0890-20130614|30808_1 329 KLETLILSHNPFTE 342
                  79*********986 PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.71
    PF13516.1   1 lknLtsLdLsnNqigde 17 
                  +k+L+ + + +++i+d+
  MMETSP0890-20130614|30808_1 350 CKKLKLIKVDSTKISDN 366
                  78888888778888774 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.7     0.007        16      23      40 ..      54      71 ..      41      78 .. 0.72
   2 ?    3.9   0.1     0.025        57      22      44 ..     103     125 ..      84     156 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.007
    PF09026.5 23 eeedeededeedeeedde 40
                   edee++d +d e+dd 
  MMETSP0890-20130614|30808_1 54 VAEDEEEDDTDDAEDDDG 71
                 456777777777777775 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.025
    PF09026.5  22 deeedeededeedeeeddevpvp 44 
                  ++e +e+  de+de+e    p p
  MMETSP0890-20130614|30808_1 103 NDEREEKSIDEDDENEIISTPEP 125
                  33334445556666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.93
# Mc/sec: 1035.84
//
Query:       MMETSP0890-20130614|30816_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   33.7   0.0    3.3e-08   33.0   0.0    1.4  1  PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
    0.00087   18.4   0.1     0.0016   17.5   0.0    1.5  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   4.8e-12   3.3e-08       2      72 .]      74     144 ..      73     144 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 4.8e-12
                  EEEEEESSS-.-EEEEEETTSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE- CS
    PF11976.3   2 kivlkgkdgk.evkikVkpdttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvvi 72 
                   i++k  + + e+++k +++t lsk+ ++ +++ +  + +++r+ + G r++ ++t+++l++ + d+id+v+
  MMETSP0890-20130614|30816_1  74 SIKVKHIQSQqELYFKLNSTTLLSKVFSCCSERFQFHP-STARFFYGGIRIHGDQTPAQLEMSELDQIDLVL 144
                  57888877666***************************.******************************996 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.4e-07    0.0016       5      67 ..      83     145 ..      74     147 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.4e-07
                  SEEEEEEECTTSBHHHHHHHHHHHHTS-GGGEEEEE---BETTTSBTTTTTT-TTEEEEEEES CS
   PF00240.18   5 gktitlevepsdtvselKekieekegipvdqqrLiysGkvLeDdrtlseyniqdgstlhlvlr 67 
                  +++  +++++++  s++    +e+ +++++  r++y G +++ d+t +++ + + +++ lvl+
  MMETSP0890-20130614|30816_1  83 QQELYFKLNSTTLLSKVFSCCSERFQFHPSTARFFYGGIRIHGDQTPAQLEMSELDQIDLVLE 145
                  55677888888888888888999******************999999*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       655  (0.0479081); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 635.22
//
Query:       MMETSP0890-20130614|30810_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0002   21.2   0.0    0.00052   19.8   0.0    1.7  1  PF01734.17 Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.8e-08   0.00052      95     180 ..      47     149 ..       9     203 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.8e-08
   PF01734.17  95 aealrellr.kvlgdltlkrlsarlgklpllkslataaqavpaittataasastantanslyteddeddvpladavraSsafPglf........................p 180
                  +++l++ +r  v gdlt++++  ++gk+         ++ v  + +  +a++  a  + +l+++ +++ v +++a raS+a+Pg+f                        +
  MMETSP0890-20130614|30810_1  47 GDHLARVIRsNVGGDLTFQEAFDKTGKI--------LNIPVREHDAQGEARRIKASAPPRLLNYLTTPHVVVWSASRASCAVPGVFapspllvrcrdgalryedeaddlyD 149
                  5666666666667888999999999999........578888888899999999999999**************************5555555444444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.43s 00:00:01.26 Elapsed: 00:00:01.01
# Mc/sec: 1347.65
//
Query:       MMETSP0890-20130614|30822_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       261  (0.0190901); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 207.92
//
Query:       MMETSP0890-20130614|30814_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-20   70.4   0.7    7.9e-09   35.4   0.1    2.4  2  PF13499.1  EF-hand domain pair
    1.7e-16   58.0   0.0      0.002   17.1   0.0    4.5  4  PF00036.27 EF hand
      3e-14   51.4   0.3       0.02   14.6   0.0    4.5  4  PF13405.1  EF-hand domain
    6.2e-10   37.8   0.1       0.15   11.3   0.0    4.4  4  PF13202.1  EF hand
      9e-09   34.8   3.2    1.8e-08   33.8   2.2    1.5  1  PF13639.1  Ring finger domain
    1.4e-06   28.3   0.0    3.1e-06   27.2   0.0    1.5  1  PF00169.24 PH domain
    1.1e-05   25.0   2.2    2.2e-05   24.0   1.5    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    4.7e-05   22.4   0.0    0.00013   21.0   0.0    1.7  1  PF00240.18 Ubiquitin family
    4.8e-05   23.2   2.7    0.00012   22.0   1.9    1.6  1  PF12678.2  RING-H2 zinc finger
    5.2e-05   22.6   1.0       0.43   10.1   0.0    4.3  5  PF13833.1  EF-hand domain pair
    5.9e-05   22.5   2.4    0.00012   21.5   1.7    1.5  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00022   20.7   2.6    0.00044   19.7   1.8    1.6  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0046   16.7   0.2        1.7    8.4   0.0    3.3  3  PF01556.13 DnaJ C terminal domain
  ------ inclusion threshold ------
      0.027   14.2   0.4      0.027   14.2   0.3    1.9  2  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
      0.078   12.9   0.5       0.25   11.2   0.3    2.0  1  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
       0.13   11.9   0.2       0.39   10.4   0.1    1.8  1  PF05011.8  Lariat debranching enzyme, C-terminal domain
       0.14   12.0   0.6       0.37   10.6   0.4    1.7  1  PF11793.3  FANCL C-terminal domain
       0.22   11.2   1.7        0.4   10.4   1.2    1.3  1  PF05883.6  Baculovirus U-box/Ring-like domain


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.2e-11     4e-08       6      63 ..     304     360 ..     282     361 .. 0.89
   2 !   35.4   0.1     1e-11   7.9e-09       6      63 ..     418     479 ..     403     481 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 5.2e-11
    PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                  F+llD+d++g+++ e+ l  lk+ + + ++ee++ + d++++ +D++++G l+++E++
  MMETSP0890-20130614|30814_1 304 FQLLDVDHTGRIESEDVLITLKA-QLKCREEELDAQWDKLWDSFDLDHSGSLTYDELV 360
                  9***************9988876.45666***************************96 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 1e-11
    PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgsels....deevrevldyifkelDkngdGvlsfeEfl 63 
                  F+  D d++g+ld  eLlr+l h+ +++      +e+++++  +++  D  gdG++s++Efl
  MMETSP0890-20130614|30814_1 418 FEFWDEDNSGTLDEGELLRALVHSFNKRGqrneVREMKDIVHSLLAACDVSGDGLISRDEFL 479
                  6678*********************9999*8887777779999******************8 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00025      0.19       4      26 ..     302     324 ..     301     327 .. 0.85
   2 !   17.1   0.0   2.6e-06     0.002       2      23 ..     339     360 ..     338     361 .. 0.93
   3 !   13.2   0.0   4.9e-05     0.037       5      27 ..     417     439 ..     415     441 .. 0.91
   4 !   11.2   0.0   0.00021      0.16       7      23 ..     463     479 ..     457     481 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00025
                  HHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   4 eaFkefDkDgdGkIsfeEfkeal 26 
                  ++F+++D+D++G+I+ e+ +  l
  MMETSP0890-20130614|30814_1 302 RWFQLLDVDHTGRIESEDVLITL 324
                  69*************99987665 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.6e-06
                  HHHHHHHHCTTTSSEBEHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfk 23 
                  ++++++ fD D++G ++++E++
  MMETSP0890-20130614|30814_1 339 WDKLWDSFDLDHSGSLTYDELV 360
                  799*****************98 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 4.9e-05
                  HHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   5 aFkefDkDgdGkIsfeEfkealk 27 
                  +F+  D D++G+++  E+++al 
  MMETSP0890-20130614|30814_1 417 WFEFWDEDNSGTLDEGELLRALV 439
                  899****************9986 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00021
                  HHHCTTTSSEBEHHHHH CS
   PF00036.27   7 kefDkDgdGkIsfeEfk 23 
                  +  D+ gdG Is +Ef+
  MMETSP0890-20130614|30814_1 463 AACDVSGDGLISRDEFL 479
                  678*************7 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0003      0.23       4      27 ..     302     325 ..     301     330 .. 0.89
   2 !   12.1   0.0   0.00016      0.12       2      23 ..     339     360 ..     338     374 .. 0.90
   3 !   14.6   0.0   2.7e-05      0.02       4      27 ..     416     439 ..     415     446 .. 0.90
   4 !    7.6   0.0    0.0046       3.5       7      23 ..     463     479 ..     458     484 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0003
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  + F+l+D d++G+i+ e+++  L+
  MMETSP0890-20130614|30814_1 302 RWFQLLDVDHTGRIESEDVLITLK 325
                  67****************988776 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00016
                  HH---GCC-------B---HHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELr 23 
                  + ++++ fD d++G ++ +EL+
  MMETSP0890-20130614|30814_1 339 WDKLWDSFDLDHSGSLTYDELV 360
                  678999**************97 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 2.7e-05
                  ---GCC-------B---HHHHHHH CS
    PF13405.1   4 eaFklfDkdgdGkidaeELrdaLr 27 
                  + F+  D d++G++d  EL++aL 
  MMETSP0890-20130614|30814_1 416 AWFEFWDEDNSGTLDEGELLRALV 439
                  679******************996 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0046
                  GCC-------B---HHH CS
    PF13405.1   7 klfDkdgdGkidaeELr 23 
                   + D  gdG i+++E++
  MMETSP0890-20130614|30814_1 463 AACDVSGDGLISRDEFL 479
                  578************97 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0022       1.7       4      19 ..     303     318 ..     301     319 .. 0.89
   2 !    6.8   0.0    0.0052       3.9       8      21 ..     346     359 ..     344     366 .. 0.92
   3 !    6.0   0.0    0.0096       7.3       3      24 ..     416     438 ..     414     439 .. 0.83
   4 !   11.3   0.0    0.0002      0.15       5      21 ..     462     478 ..     457     482 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0022
                  HHHHH--S----B-HH CS
    PF13202.1   4 tFrafDlNgDGkIsre 19 
                  +F+ +D++  G+I  e
  MMETSP0890-20130614|30814_1 303 WFQLLDVDHTGRIESE 318
                  8************876 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0052
                  H--S----B-HHHH CS
    PF13202.1   8 fDlNgDGkIsreEL 21 
                  fDl+ +G ++ +EL
  MMETSP0890-20130614|30814_1 346 FDLDHSGSLTYDEL 359
                  9************9 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0096
                  HHHHHH--S----B-HHHHHH.H CS
    PF13202.1   3 dtFrafDlNgDGkIsreELkr.l 24 
                  ++F+  D +++G+++  EL r l
  MMETSP0890-20130614|30814_1 416 AWFEFWDEDNSGTLDEGELLRaL 438
                  578888*************7645 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.0002
                  HHHH--S----B-HHHH CS
    PF13202.1   5 FrafDlNgDGkIsreEL 21 
                  + a D+ gDG Isr+E+
  MMETSP0890-20130614|30814_1 462 LAACDVSGDGLISRDEF 478
                  6789************9 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   2.2   2.4e-11   1.8e-08       2      45 ..     234     285 ..     233     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2.4e-11
    PF13639.1   2 eCaiCldelsegeevvrl......p.CgHvfHeeCldewl..rssnsCPlCrk 45 
                  eCa+C+del   +++ +l      + C+H+fH +Cl++++   ++  CP+Crk
  MMETSP0890-20130614|30814_1 234 ECAVCFDELHA-RQIGVLvdnnnaRiCRHLFHLDCLEDLVkpGENILCPMCRK 285
                  8********65.44444446677677**************444578******8 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0     4e-09   3.1e-06      12      99 ..       5      99 ..       1     103 [. 0.87

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4e-09
                 TSSSCEEEEEEEEET..TEEEEESSSST...........TCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHH CS
   PF00169.24 12 ellktwkkryfvLts..nyLlyfksskk...........ksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqal 99
                  ++  w +r+fvL    + Lly+ +                +   k  ipl+++ +  ++  +     +++++f+i+ + + +y lsa s++ +++W++++
  MMETSP0890-20130614|30814_1  5 WRKGAWNRRFFVLSPkfKSLLYYTKGLHsrhvsaaregdSAAPPAKSQIPLQGAVIIPTTVED-----DKPFSFTIRIPGG-EYNLSARSADLKEKWLAQI 99
                 56789**********99777777777667********96566666788******999999985.....*************.****************999 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   1.5   2.8e-08   2.2e-05       2      46 .]     232     285 ..     231     285 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.8e-08
    PF13923.1   2 rfsCpiCleelen...........pviltpCgHlyCkkCieqwleks.kkkCPiCrn 46 
                  + +C +C++el             + i   C+Hl++ +C+e+++++  +  CP+Cr+
  MMETSP0890-20130614|30814_1 232 HSECAVCFDELHArqigvlvdnnnARI---CRHLFHLDCLEDLVKPGeNILCPMCRK 285
                  679********7777999999875434...**************9966667****95 PP

>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.7e-07   0.00013      15      67 ..     550     604 ..     540     606 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.7e-07
                  TSBHHHHHHHHHHHHT.S-GGGEEEEE---BE.TTTSBTTTTTT-TTEEEEEEES CS
   PF00240.18  15 sdtvselKekieekeg.ipvdqqrLiysGkvL.eDdrtlseyniqdgstlhlvlr 67 
                  ++tv++l    ++ ++ i +++  L+  G++L  Dd +l + +i++g+ l+lv++
  MMETSP0890-20130614|30814_1 550 NTTVRQLRTLAAQLHNnINPNRVILVCRGQRLdNDDLKLPDAGIRSGDSLMLVIS 604
                  79***************************************************97 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.9   1.5e-07   0.00012      20      75 .]     233     284 ..     219     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.5e-07
    PF12678.2  20 dnCaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrk..tCPlcr 75 
                   +Ca+C  el+   +   + +  ++  +    C H FHl+C++ ++k  +   CP+cr
  MMETSP0890-20130614|30814_1 233 SECAVCFDELHARQIGVLVDN--NNARI----CRHLFHLDCLEDLVKPGEniLCPMCR 284
                  25********88888888877..66666....**************966668*****8 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2   8.8e+02      31      46 ..     304     319 ..     304     325 .. 0.86
   2 !    6.4   0.0    0.0082       6.2      34      48 ..     346     360 ..     340     362 .. 0.89
   3 ?   -2.3   0.0       4.2   3.2e+03      10      30 ..     366     384 ..     365     384 .. 0.70
   4 ?    1.5   0.0      0.26     2e+02      35      52 ..     422     439 ..     415     441 .. 0.82
   5 !   10.1   0.0   0.00056      0.43       5      49 ..     429     480 ..     425     485 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.2
    PF13833.1  31 frefDtdgdGkisfeE 46 
                  f ++D d+ G+i  e+
  MMETSP0890-20130614|30814_1 304 FQLLDVDHTGRIESED 319
                  7789*******98776 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0082
    PF13833.1  34 fDtdgdGkisfeEFc 48 
                  fD+d++G ++++E +
  MMETSP0890-20130614|30814_1 346 FDLDHSGSLTYDELV 360
                  9************75 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 4.2
    PF13833.1  10 Lkral.allglkglseeevdil 30 
                  L +al + lg   ls+++v++l
  MMETSP0890-20130614|30814_1 366 LVSALtRVLG---LSPDDVHAL 384
                  5667766553...999999876 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.26
    PF13833.1  35 DtdgdGkisfeEFcvlle 52 
                  D d++G +++ E +++l+
  MMETSP0890-20130614|30814_1 422 DEDNSGTLDEGELLRALV 439
                  99*******999888876 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00056
    PF13833.1   5 ItreeLkral.allglkg.....lseee.vdilfrefDtdgdGkisfeEFcv 49 
                  ++  eL ral  ++ + g      + ++ v+ l+ + D  gdG is +EF++
  MMETSP0890-20130614|30814_1 429 LDEGELLRALvHSFNKRGqrnevREMKDiVHSLLAACDVSGDGLISRDEFLA 480
                  566666666665554444455652223348999*****************87 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.7   1.6e-07   0.00012       3      45 ..     233     285 ..     231     289 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.6e-07
    PF13920.1   3 ktCvvCler..ead.vlllp......CgHlclCeeCaerllk..rkkkCpiCrs 45 
                  ++C vC+++   ++  +l+       C+Hl +  +C e+l+k  ++  Cp+Cr+
  MMETSP0890-20130614|30814_1 233 SECAVCFDElhARQiGVLVDnnnariCRHL-FHLDCLEDLVKpgENILCPMCRK 285
                  78******754333223333567777****.**********************8 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.8   5.8e-07   0.00044       1      41 []     235     283 ..     235     283 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 5.8e-07
                  -TTTSSS-SSEE.........BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepn........elleCkHsfCskCirkilksrkkvkCPlC 41 
                  C++C++e+   +         +  C+H f+ +C++ ++k  ++  CP+C
  MMETSP0890-20130614|30814_1 235 CAVCFDELHARQigvlvdnnNARICRHLFHLDCLEDLVKPGENILCPMC 283
                  9*******999999*99999999****************988889**** PP

>> PF01556.13  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.3   2.5e+03      26      44 ..     555     580 ..     542     601 .. 0.49
   2 ?    4.2   0.0     0.047        36      18      45 ..     678     704 ..     674     706 .. 0.93
   3 !    8.4   0.0    0.0023       1.7      24      46 ..     737     759 ..     733     772 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 3.3
   PF01556.13  26 g.rkikvkippgtkpgekl......r 44 
                  + r++  +++++++p++++      r
  MMETSP0890-20130614|30814_1 555 QlRTLAAQLHNNINPNRVIlvcrgqR 580
                  45555555666666666654333330 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.047
   PF01556.13  18 tvevptldgrkikvkippgtkpgeklri 45 
                  t++vp  ++ +++v++p+g  pg+ ++i
  MMETSP0890-20130614|30814_1 678 TIRVPNTNN-NLQVRVPSGYFPGTTFTI 704
                  789999999.****************98 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0023
   PF01556.13  24 ldgrkikvkippgtkpgeklrik 46 
                  + gr ++vk+p+g++pg++l++ 
  MMETSP0890-20130614|30814_1 737 PGGRVMRVKVPAGVQPGQELMVN 759
                  66899***************654 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   3.5e-05     0.027      51      79 ..     258     285 ..     234     288 .. 0.88
   2 ?   -2.6   0.1         6   4.6e+03      25      38 ..     764     778 ..     760     781 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.5e-05
    PF12861.2  51 kckhnfhlhcilkwletetskglcpmcrq 79 
                   c+h fhl c+   + ++  + lcpmcr+
  MMETSP0890-20130614|30814_1 258 ICRHLFHLDCLEDLV-KPGENILCPMCRK 285
                  4*********98765.678899******7 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6
    PF12861.2  25 Gicrvsf.dGtcpsc 38 
                  G crv+  +G+cp  
  MMETSP0890-20130614|30814_1 764 GRCRVTVpQGVCPGM 778
                  789998647999975 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00033      0.25      44     111 ..     403     479 ..     326     481 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00033
    PF10591.4  44 aekknskeckeaveWkFnqlDtnkdkvlsksEl.aplrapl.........vklehCikeffksCDadkdkkisleEWc 111
                    ++  +  k++  W F+ +D ++ + l++ El ++l +++          +++  +++++ +CD+  d+ is +E+ 
  MMETSP0890-20130614|30814_1 403 YLHNAPDLTKDKHAW-FEFWDEDNSGTLDEGELlRALVHSFnkrgqrnevREMKDIVHSLLAACDVSGDGLISRDEFL 479
                  334444445555555.9999999999999988634555544555555554789999********************96 PP

>> PF05011.8  Lariat debranching enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00051      0.39      47     131 ..      93     179 ..      84     188 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00051
    PF05011.8  47 pEWLaIlratnellslkkdleanppekeg....eekykplieeeeewveekivkkgklkiPenFvqtappydpaeeeekvdeqpkeylN 131
                  + WLa + ++++  ++ +++++n++         +   p+ + +++  +++i++ ++++iP+  + t p ++p+++ + v + ++ y  
  MMETSP0890-20130614|30814_1  93 EKWLAQITCVAHGKEV-GTPTYNIQSRPPaypnPQTLLPSSQTSQNTSMQNIQEGERVQIPQRANSTMPSWKPSNS-DCVSPSSPTYAP 179
                  6799999999998886.44444433333323347888899899999999*************************94.444555555544 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00048      0.37       3      41 ..     233     272 ..     231     278 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00048
                  -S-SSS--SS--------B--S-TT..----B-SGGGHHHH CS
    PF11793.3   3 veCgiCyayrldsgevpdisCdnek..CnkkfHaaCLkeWl 41 
                   eC +C+ +     ++ + + +n+   C + fH  CL++ +
  MMETSP0890-20130614|30814_1 233 SECAVCFDELH-ARQIGVLVDNNNAriCRHLFHLDCLEDLV 272
                  79*****9887.777777766554336**********9966 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.2   0.00053       0.4      25      64 ..     231     270 ..     217     286 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00053
    PF05883.6  25 vsveCaiCldeiee.nkGvvavtekgtldleklfhkeClkr 64 
                   + eCa+C+de++  + Gv  v ++++    +lfh +Cl+ 
  MMETSP0890-20130614|30814_1 231 EHSECAVCFDELHArQIGV-LVDNNNARICRHLFHLDCLED 270
                  567***********55565.566666667899******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        18  (0.00131656); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.20u 0.42s 00:00:01.62 Elapsed: 00:00:01.01
# Mc/sec: 1862.52
//
Query:       MMETSP0890-20130614|30826_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-15   55.6  11.6    2.6e-09   36.4   4.3    2.6  2  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.25   11.0   0.0    1.6  1  PF14292.1  SusE outer membrane protein


Domain annotation for each model (and alignments):
>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   1.2e-08   8.3e-05       2      27 .]     234     259 ..     233     259 .. 0.91
   2 !   36.4   4.3   3.8e-13   2.6e-09       2      27 .]     303     327 ..     302     327 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.2e-08
                  -S---SGGGG--.--------SS---- CS
   PF00642.19   2 ktelCrffartG.tCpyGdrCkFaHge 27 
                  kt+lCr   + G  C yGd+C+FaH++
  MMETSP0890-20130614|30826_1 234 KTRLCRSVGT-GvPCVYGDKCSFAHSQ 259
                  8999999999.67************97 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 3.8e-13
                  -S---SGGGG----------SS---- CS
   PF00642.19   2 ktelCrffartGtCpyGdrCkFaHge 27 
                  kt+lCr ++++G+Cp+Gd+C+FaHg+
  MMETSP0890-20130614|30826_1 303 KTKLCR-YFQSGHCPFGDKCNFAHGQ 327
                  9*****.7777*************97 PP

>> PF14292.1  SusE outer membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05      0.25       9      87 ..      58     138 ..      50     146 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.6e-05
    PF14292.1   9 tsCedDdeetdl...npesaeeltlpasstslvldeaseeavtftWtaadyggtdasvtYtveldkkgndf.skavslgttdn 87 
                  ++C  +++ +     +p+  +++    s++sl+++  s+++v  +W +a+   ++++  Y++el  k++d  +k++++  t++
  MMETSP0890-20130614|30826_1  58 AACRRQKDSKFAnalEPNIYNTVLIL-SGSSLEVQ-RSTAKVLAEWRKASLFSSQTEALYDLELRFKQDDTnQKPIQVSGTEK 138
                  67776665544411144444555544.89999999.66678***********************9877655145566655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.77
# Mc/sec: 1307.10
//
Query:       MMETSP0890-20130614|30840_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.78
# Mc/sec: 835.65
//
Query:       MMETSP0890-20130614|30848_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-34  117.1   0.0    9.1e-34  116.8   0.0    1.0  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   6.7e-38   9.1e-34      69     268 ..       4     210 ..       1     213 [. 0.86

  Alignments for each domain:
  == domain 1    score: 116.8 bits;  conditional E-value: 6.7e-38
                  CHHHHC--.....B...---.EEEEEEEEE--HHHH------EEEEEEEETTEEEEEEEEETTTTEEEE-------EEE-EEEE----S-GGG-CCBEE--SSSSSCHHHCCCHHHHCCHHCCHEE.E.BE-SHHHHHHHHH----S.EEEEEEEEBHHHH----HHHHH---EEEECSS-S.CS...S-EEEEEEC.HHHHHHHHHHHHT CS
   PF00459.20  69 eetlaage.....kselgesgltwvvDPiDGTknFirgipqfavsiglleegkpvlGviaaPllnqlysaakgkGaflngqklkvsrapptseallatlfavssvkdtseaellekvlsavsspgv.r.rvgssalklalvAeGkad.ayiefgrekkWDhaAGvaiveeaGGvvtdlkgegltl...lkkgviaasqkelaellaaavee 268
                  ee + +       k++ +++++ wv+DPiDGTk F  g+p f ++++l ++g+p+lGvi +P+ ++++ ++ g+G++lng  ++++  ++t+  lla ++a+ +++d+    + + +  +++++ v r  +g  ++++al+A +    ++ e++ ++ +D  A v +v +aGG++ d++g++l l    + +v+aas+ +l+++ +a++++
  MMETSP0890-20130614|30848_1   4 EEFGPSPCidfgeKTTMETAEWQWVLDPIDGTKSFMTGKPVFGTLVALCYRGEPLLGVIDQPISKERWIGVIGHGTTLNG--IPCKAFSDTNPTLLADALAYATTPDMFAPGVEAAAFDRLRTA-VkRmLFGCDCYAYALLASNFGPsIVCEAD-LQTYDYLALVPVVSAAGGIISDWNGNPLSLhqtGQGRVLAASTPKLHQQALAILQQ 210
                  554444445566677788888***********************************************************..***************************999999999999999.4242559999********99873677777.**************************888844456799999988888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 707.36
//
Query:       MMETSP0890-20130614|30847_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-133  446.4   0.0   1.2e-133  446.2   0.0    1.0  1  PF02074.10 Carboxypeptidase Taq (M32) metallopeptidase
  ------ inclusion threshold ------
       0.14   11.5   1.0        6.5    6.1   0.3    2.2  2  PF11997.3  Domain of unknown function (DUF3492)


Domain annotation for each model (and alignments):
>> PF02074.10  Carboxypeptidase Taq (M32) metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.2   0.0  1.8e-137  1.2e-133       4     494 .]       6     509 ..       3     509 .. 0.93

  Alignments for each domain:
  == domain 1    score: 446.2 bits;  conditional E-value: 1.8e-137
   PF02074.10   4 eaaekellellrriaalgeavallaWdsrtniPkeGseeraeaigelsvllqelatkprlkelvekvkgs.vedlsedekkavrvlkreyeeakaiPeellkelaeatskaetaWeeakakddfskfePyleklielakrileylG.yeeePydalldlyepGvrvrdleklfaeleeelkpllekilesgk.kPdesvlekkyp......k..ekqkklalellqklGydleagrldetahPfetelgrgdvrittryeekdfraailgtihelGhalyeqqld..ealsgtplaegaslGihesqsrfyenliGrskefverfypklkealssledvsledfvlavnavkPslirveadevtynlhilvrlelekalfseevkvedlPelWnekyeaylGiaPk.tykeGilqdvhWagGsfGyfPtyalGtlyaaqlfakikedlpeleellarGefePikdWlrekihaeGsr.fkPkelvkkatGeelnaeylvryleeky 494
                  e a+  l ++l+++a lge+ ++l++d+++ +Pk     rae+ + ++  l+  +t p++k  ++ v++  +ed    e+ +vr++   +++  +  +el+   a++ s+a  aW ea+  +d+ +f P le++++l k++++    +  + yd  ld+ye G ++ +++++fa++++el+pll+ +le  k +P+ + ++++        k   +qk la ++ + lGyd+ +grlde+ahPf+   g+ d rittry  +++  +  +t+he+Ghalyeq+ +  e+    p+++++++Gihesqs+++e ++ +sk f+++  p  +e +++ +  s +df++a+n v+P lirv+ade+ y++hi++r+++e+ lf +e++v+d+P +W++ +++ lG++   + k+G lqdvhW+ G +GyfP+y+lG + aaq+fa +++d+p+l++ +a+G+f  +  Wlr+ ih++Gs    P++l++  tG+ ++a+ ++++l+ ky
  MMETSP0890-20130614|30847_1   6 EGAYAALTKVLKEVAILGEVDSILGYDEQVFMPKGAAASRAEQKAVIAGILHAKKTGPEMKIAIDGVRNEkFEDE--WEAANVRLAIDSFDKESRKSQELAEKEAKLESEAFAAWAEARKENDWLLFAPKLEEMFALKKELAHITRpEFSQAYDGALDVYERGTTSAQINEIFAKVDQELQPLLNAVLEAKKmNPNIDAVHQALRldhpgwKdlAAQKGLATKIAKSLGYDFFCGRLDEAAHPFTGGAGPTDTRITTRYSTDNWLEGFSATVHEVGHALYEQGRPtfEKAHKMPVSDAMTMGIHESQSLLWERMVMQSKPFWNFCTPLFHEFFPHTKSASANDFYRAFNVVEPGLIRVNADELCYPYHIILRYNIERKLFANEISVHDIPTIWQDTMQSSLGVSVDgKSKDGALQDVHWSFGAIGYFPSYTLGAICAAQIFAAAHNDIPDLDQAIAKGDFVQLTTWLRKHIHQRGSLpESPNALLEACTGSVISAQPFLKHLRTKY 509
                  5677788999*******************************************************9987658885..55677888888887777777888888899**********************************999888566788************************************9877379999999865311112222247999***************************************************************98766889999**************************************************************************************************************9752689******************************************************************8467************************99 PP

>> PF11997.3  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3   0.00095       6.5      71     177 ..      96     204 ..      73     207 .. 0.71
   2 ?    3.7   0.0    0.0049        33     102     168 ..     295     364 ..     261     372 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00095
    PF11997.3  71 asaapkkkkgekealetleellealkeeeaeeeellkelleelaekakklsledfleskeaweilteqyeeeceepsftdvfwtvrlllspllal..laeel.pkadvyH 177
                  +s+++ ++  ekea+ ++e++  + + +++++  l++  lee+++ +k+l   +  e  +a++   + ye+  ++++++++f  v+  l+pll++   a+++ p+ d++H
  MMETSP0890-20130614|30847_1  96 ESRKS-QELAEKEAKLESEAFAAWAEARKENDWLLFAPKLEEMFALKKELAHITRPEFSQAYDGALDVYERGTTSAQINEIFAKVDQELQPLLNAvlEAKKMnPNIDAVH 204
                  23332.444455555556666666666665566666666777777776776666677788899999****************************9753444448888888 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0049
    PF11997.3 102 eeellkelleelaekakklsledfleskeaweilteqyeeec...eepsftdvfwtvrlllspllallae 168
                  + ++ + ++  ++e ++ l ++ +++sk +w++ t  ++e +   +++s +d++ + +++   l+ + a+
  MMETSP0890-20130614|30847_1 295 KMPVSDAMTMGIHESQSLLWERMVMQSKPFWNFCTPLFHEFFphtKSASANDFYRAFNVVEPGLIRVNAD 364
                  55666667778888888899999***********999999875557889999999999998888887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.43s 00:00:01.35 Elapsed: 00:00:00.87
# Mc/sec: 1424.04
//
Query:       MMETSP0890-20130614|30854_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-11   42.4   0.0    7.2e-11   42.1   0.0    1.1  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.058   13.2   0.1        0.1   12.4   0.1    1.4  1  PF00511.12 E2 (early) protein, C terminal


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     1e-14   7.2e-11      28     189 ..      10     219 ..       4     224 .] 0.78

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1e-14
                  HHHHHHHH---EEEE---S.----TTT--------....--------SSB.........S--TT..-SSGGG----....--SB-S-TTSSS----EEEEEEE---..----EEEB---HHHHHHH...HHHHHHHTT.EEEEEE----SS-.........................................--EEEEEESEEE----EEEE---TT CS
   PF02668.11  28 elrealaehgvvlfrglpl.speqfeelarrfgpleqsprntfygetwdv.........rsvka.nvkdaaytpedttralplHtDlsylesppgvqlLhclenpa..eGGetlfvdgfaaynaLs...pelkellae.gltyvysndgery...........e............................eespekrhPlvrthpvtgekvlyvnp 189
                  ++ +a  e g+++f g+++ spe+  ++ ++ g l+ +p  +       v         +s+++ +v +a+++p++  +++p H++l+ +++pp+ ++++c en +   GG t+++ + ++++ L    p   ++l++ g++yv   +  +            +                             + ++ r+P++rt  ++g+k+++++ 
  MMETSP0890-20130614|30854_1  10 DVIKAASENGACVFCGFDIrSPEEWCAVLSATG-LQPTPYVGGAA----VrklcvgsneGSMQTlQVVTANESPPS--EPIPPHHELAQTPEPPSHICFYCQENDPvpGGGGTPICRSDEMLDFLVlkyPGFVQRLETaGVKYVKITPAVDDptsalgrswksMyhvqtkeeaekrmkeqgstwewinnnndCRITSPRLPAIRTC-SNGRKAFFNQI 219
                  67788999**********99************8.53333333332....123455766644444767777777777..68************************9897789**************************66*******999999887777666651455556666677777888888888888845677889999988.58999888875 PP

>> PF00511.12  E2 (early) protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.5e-05       0.1      19      66 ..     171     218 ..     165     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   PF00511.12  19 lkkkykklfkkisttwswtseksterkgsarvlvtFkseeqRekFlkt 66 
                  +k++ +k +k+  +tw+w++++++ r +s r+    + ++ R+ F ++
  MMETSP0890-20130614|30854_1 171 TKEEAEKRMKEQGSTWEWINNNNDCRITSPRLPAIRTCSNGRKAFFNQ 218
                  677788899999**************9999998888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.81
# Mc/sec: 662.70
//
Query:       MMETSP0890-20130614|30859_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-15   56.3   0.0    5.8e-15   55.2   0.0    1.6  1  PF10996.3 Beta-Casp domain
    7.3e-12   44.9   0.0      1e-11   44.5   0.0    1.2  1  PF11718.3 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
      4e-09   36.0   0.0    7.2e-09   35.2   0.0    1.5  1  PF07521.7 RNA-metabolising metallo-beta-lactamase


Domain annotation for each model (and alignments):
>> PF10996.3  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.3e-18   5.8e-15      78     126 .]       7      55 ..       2      55 .. 0.93

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.3e-18
    PF10996.3  78 ilepkvilassgmlegGrskeylkklasdpkntvllvgyqaegtlgrrl 126
                   ++p+v+las+gml++G s++++++++sd++n+v+l gy +egtl+++l
  MMETSP0890-20130614|30859_1   7 DSGPCVVLASPGMLQSGVSRQLFERWCSDNRNAVVLAGYAVEGTLAKQL 55 
                  358*******************************************997 PP

>> PF11718.3  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   2.2e-15     1e-11       7     173 ..     186     388 ..     180     444 .. 0.74

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.2e-15
    PF11718.3   7 GvLVkkdFklsLlapsDLreytgLststitqkqsiklsaa.ldllkwaLeqmfgaveeleede.........ekaallvmgcitvlveksk....eveleWesnlvnDmvADsviavllsvesspasvkqsskkkshshsh...eknahkkseeeerlerll.mlLeaqFGddlvslkekekek...................a 173
                  GvLV k+ + ++ +   L    +L++  i+q+ +++lsaa  + l  aL+++f +v+  + ++            +l v g++  l+ +++     + l+W + +v+D++AD+v  + l   + p++  +s+  +  s      ++++++ +++ +++ +l+ ++L ++FG+dlv+ + +e ++                    
  MMETSP0890-20130614|30859_1 186 GVLVVKELQTTFYTDAQLDAS-TLTVVEIDQTLRLRLSAAaAEGLLSALRRTFYDVKLESAESslrndpklqRLLKLNVCGHVSCLLITDEhaqnHLILNWRAAPVSDVLADAVAYLALHTGKVPTAGLLSTDCCAPSSYPppeQEEQQQLPDTYSIVFNLVkKTLIDHFGSDLVEVLPNEIDHnpdikpmideneeeahqndP 388
                  899999999888888888875.5*****************9***************99888889******99889999***999888777778899************************************999544444787666666666666665554279********9987766655556755444444444444440 PP

>> PF07521.7  RNA-metabolising metallo-beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.6e-12   7.2e-09       3      42 ..      70     109 ..      68     110 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.6e-12
    PF07521.7   3 ipvkarveqlhfSGHAdqeeLlellkllkpkkvilVHGEp 42 
                  ++ ++ v++++fS+H d+ +   +++++ p  vilVHGE+
  MMETSP0890-20130614|30859_1  70 LKRNCTVVSVSFSAHTDYKQNATFVRATSPGAVILVHGEK 109
                  6789***********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.80
# Mc/sec: 1401.87
//
Query:       MMETSP0890-20130614|30873_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       634  (0.0463721); expected 273.4 (0.02)
Passed bias filter:                      539  (0.0394236); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 771.81
//
Query:       MMETSP0890-20130614|30879_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       138  (0.0100936); expected 273.4 (0.02)
Passed bias filter:                      131  (0.00958163); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 186.77
//
Query:       MMETSP0890-20130614|30876_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-22   78.8   0.0    3.1e-22   78.5   0.0    1.1  1  PF01048.15 Phosphorylase superfamily
  ------ inclusion threshold ------
        0.1   12.6   0.3       0.26   11.3   0.2    1.9  1  PF12804.2  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> PF01048.15  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   4.5e-26   3.1e-22       2     192 ..      34     239 ..      33     273 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 4.5e-26
                  EEEEES-HHHHHHHHCC.GGGSTT----B---CCC-EEE----EEEE-----HHHH.HCHHHHHCHH..-SEEEEEEEE----TTT----EEE-S-...EEE----GCT.....T.GTS-TTTTB-B-HHHHHHHHHHHHC--..GGEE---EEE-S-S--TT.........HHHHH...HHHHTT--B-BSSCHHHHHHHHTT-..-EEE CS
   PF01048.15   2 iaiivgspgevallaespleetpygregrggkfvtGtlkgkpvvlvstGiGkpnaa.viatarllkefgvkaiirtGtaGglnpdlkvGdvvipdd...ainfdgtsplygpkeegegapdvaeakadpellallkeaaealg..ikvhrGvvatgdgfyaet.........eaelr...llrrlgadaveMEtaavaqvArelg..vpfa 192
                  ++++vgs  +++ l+   le+++ +r++rg++ + G+   +pv+++ tG+G ++ +  +++ar++  + + ai+r Gt+Gg+  ++k+G +v  +    ai  + ++  + +++ g+++  ++ a +++ l +l+ ++++  +  i+v +G +a++d+fy+++         ++e+    +lr+     veME+  + ++A+ ++  +p+a
  MMETSP0890-20130614|30876_1  34 RILTVGSLSRAESLSSF-LEDVQIIRSSRGFTSFSGKFQTVPVSIIATGMGSAMMDfLVREARAVING-PMAIVRLGTCGGI--GIKPGVIVANTPgsyAITRQPDAWMTTESSSGSPYKSSRIALPNKLLAELVFSKLASSPnqITVIEGLNASTDSFYSSQgrldpcfddRNENWsseFLRQDT-ISVEMESFHLLHLANCAKpsAPIA 239
                  58999************.***************************************99999999988.*************..999999999887555666666666777777789999999999999999999996666666699999********************7644444675555555.89*************987445544 PP

>> PF12804.2  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.8e-05      0.26      65     111 ..     230     276 ..      76     289 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.8e-05
                  -TT---------HHHHHH-...--EEEEETT-TT--HHHHHHHHH-- CS
    PF12804.2  65 dedpgkgplaglaaalaaaegadavlvlacDmPlltaellerlleal 111
                  + ++ + p+a+  +a+  a+++++ ++la+D+Pll++++  ++l+al
  MMETSP0890-20130614|30876_1 230 NCAKPSAPIAAATTAIVCADRTSGNVILAADLPLLERSAGSAILQAL 276
                  444445555666666666789****************9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 780.15
//
Query:       MMETSP0890-20130614|30887_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-10   38.5   0.0    1.1e-09   37.7   0.0    1.5  1  PF13242.1  HAD-hyrolase-like
    1.8e-07   31.5   0.0    0.00011   22.4   0.0    2.2  2  PF13419.1  Haloacid dehalogenase-like hydrolase
    1.5e-06   27.9   0.0    3.3e-06   26.8   0.0    1.6  1  PF13344.1  Haloacid dehalogenase-like hydrolase
      2e-05   25.1   0.0    0.00023   21.6   0.0    2.1  2  PF00702.21 haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.3e-13   1.1e-09       2      66 ..     188     253 ..     187     277 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 3.3e-13
                  ----STHHHHHHH----GGTTT...EEEE---.HHHHHHHHH---EE-----.-----TT---TTTT-S CS
    PF13242.1   2 lgKPnpgmydkalevlgappse...vvmiGDslatDieaAnaaGirsilVlt.Gvsreedlklakakpd 66 
                   gKP + ++++al++++   s    v+++GDsl++Di++A aa+i+s++V   G++ e +l+  +++pd
  MMETSP0890-20130614|30887_1 188 FGKPGKNIFQYALKQFDT--SAdinVLHVGDSLEHDIKGAAAANIDSLFVIDsGIHHE-QLSNWQFQPD 253
                  59**************32..22345**********************99988788777.4444555554 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0019       6.3      78     106 ..       6      34 ..       2      48 .. 0.86
   2 !   22.4   0.0   3.1e-08   0.00011     129     176 .]     186     235 ..     175     235 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0019
    PF13419.1  78 lfpdvvellrrlkakglklvilSngsaea 106
                  l p+v ++l++l a +  l+i+Sn s+++
  MMETSP0890-20130614|30887_1   6 LLPGVSDALEELYAMEKALIIISNTSRRQ 34 
                  78**********77***********9864 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 3.1e-08
    PF13419.1 129 vgarKPdpeayekvlerlgvkp.eeilfidDsl.edveaAraaGirtvhv 176
                   +  KP + +++++l++++  +  ++l+++Dsl +d++ A aa+i++ +v
  MMETSP0890-20130614|30887_1 186 FHFGKPGKNIFQYALKQFDTSAdINVLHVGDSLeHDIKGAAAANIDSLFV 235
                  4668**************8877368********************98765 PP

>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   9.6e-10   3.3e-06      11      88 ..       2      80 ..       1      94 [. 0.85

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 9.6e-10
    PF13344.1 11 rgdkaipgaaealkalraagkpvvllTNnsskseeeyakkleklgvdvte.eqvvtsataaaeylkkr.kadkkvlvige 88
                 +g+ ++pg+ +al+ l a++k +++++N s+++ e++++ l k g+ ++      +s++ +++ l++   ++kk++++g 
  MMETSP0890-20130614|30887_1  2 NGHGLLPGVSDALEELYAMEKALIIISNTSRRQ-ETMINTLLKKGFRAEWlTGAQCSGELCYQSLCQDeWRGKKCFFLGW 80
                 6899************************99997.99999**9*****998777888888887777764367888888875 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   3.9e+02     122     149 ..       7      35 ..       4      77 .. 0.78
   2 !   21.6   0.0   6.6e-08   0.00023     149     204 .]     174     229 ..     155     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHHTTC.EEEEESSCHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
   PF00702.21 122 kpeaaeavasLkaagi.vvlltgdnpeta 149
                   p++++a+++L a+   + ++++  +   
  MMETSP0890-20130614|30887_1   7 LPGVSDALEELYAMEKaLIIISNTSRRQE 35 
                  699***********999999995544433 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 6.6e-08
                  HHHHHHHTTCSEEEEHHHTTSHHHHHHHHHHHTS-GG.GEEEEESSC.TTHHHHHHTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxx RF
   PF00702.21 149 aeaiakqagidslvfaevkPepklfvaaieeLqidpg.evamvGDgv.nDapalaaAg 204
                  a+   +q+g    vf   kP + +f+ a++++ +++  +v++vGD++  D++++aaA+
  MMETSP0890-20130614|30887_1 174 AQLYESQLGGQ--VFHFGKPGKNIFQYALKQFDTSADiNVLHVGDSLeHDIKGAAAAN 229
                  45555566545..88888**999**********999999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.35s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 815.35
//
Query:       MMETSP0890-20130614|30892_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.84
# Mc/sec: 624.76
//
Query:       MMETSP0890-20130614|30880_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 1198.18
//
Query:       MMETSP0890-20130614|30895_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 584.11
//
Query:       MMETSP0890-20130614|30903_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       787  (0.0575629); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 655.85
//
Query:       MMETSP0890-20130614|30944_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-53  179.6   0.2    8.1e-53  179.0   0.1    1.2  1  PF02263.14 Guanylate-binding protein, N-terminal domain
    0.00086   18.4   0.2    0.00086   18.4   0.1    2.0  2  PF02841.9  Guanylate-binding protein, C-terminal domain
  ------ inclusion threshold ------
      0.033   13.4   0.2      0.063   12.5   0.2    1.4  1  PF05543.8  Staphopain peptidase C47
      0.089   12.2   0.8        4.6    6.7   0.1    3.0  3  PF11076.3  Putative inner membrane protein YbhQ


Domain annotation for each model (and alignments):
>> PF02263.14  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.1   2.4e-56   8.1e-53      17     254 ..      39     321 ..      23     326 .. 0.87

  Alignments for each domain:
  == domain 1    score: 179.0 bits;  conditional E-value: 2.4e-56
                  TTSBEEEEEEE--TT---HHHHHHHHH.....................................B-----------ST----EE-SS------EEEEEEEE-----S.SCCHTHHSHHHHHHHHHH-SEEEEEESSS--HHHHHTTHHHHH.....................---HHHHHHSS-SEEEEEEEEEEE-.-T..TTS--------HHHHHHHCT----SSSSCT...HHHHHHHHEEEEEEEEEE----TTTT-SS---.BGGGS-HHHHHHHHHHHHHHHST CS
   PF02263.14  17 idqpvvvvaivGlyrkGksfLlnklar.....................................kkkgFslrstvesetkGiliWcephpkkekvalvLlDteGlgDveksdvkddatiFaLavllssvfvYnsvqtinedaleqLqlvtEltel.irak............eervadseefvkfFpdlvflvRDfs.le..leaegealtedeyLekrLklkkgqdeklqksnelRkcirkfFpkrkcFvldrPglkvalnakleelkedeldeeFkkqlkelvsyllse 254
                  +d +v+vv++vG++r+GksfLl  ++r                                     ++++F++r++ ++ t+Gi iW+ep    ++ a+++lDt+Gl+D ++ ++  ++ iF L++l+ss ++Yn  + i+ed+l+qL l+tE   + + a+            ++  +++e+++ +F++l flvRD++ ++  +  e+ + + +eyL++ L  ++ +d        +R+ ir++F++++c++l++Pg +v+   + ++   d +++ F + ++ l+ +++s+
  MMETSP0890-20130614|30944_1  39 KDAKVAVVSVVGAFRTGKSFLLTLMLRylryktqfedggksshdwlrylgdkiyegnvnsgmeeNEQSFQWRGGRQRMTTGISIWSEPFMLAPDLAVLILDTQGLFD-NETTMGLTSCIFGLSTLMSSYQIYNVANRIQEDNLQQLALFTEYGRMaVDAQmlqakedeeitkSNTDETDEQIKAPFQRLEFLVRDWTeFDesMSDEQMVDAMEEYLNEVLAERTANDL-----AFTREQIRTCFSDISCWLLPHPGFQVTK-LSYDG-TIDMIEPLFLRGVSGLMHRVFSD 321
                  6889***********************************************************9999****************************************.9999***************************************753212233455559999875555566778899************84541134455566788999999876655443.....3489*********************987.89999.9999**********999999985 PP

>> PF02841.9  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.7      0.52   1.8e+03     222     267 ..     196     241 ..     170     274 .. 0.54
   2 !   18.4   0.1   2.5e-07   0.00086       2     116 ..     329     451 ..     328     455 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.52
    PF02841.9 222 lleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerll 267
                  +++ ++ke+e+  +++  +++e++k   ++le   + + e  e++ 
  MMETSP0890-20130614|30944_1 196 AQMLQAKEDEEITKSNTDETDEQIKAPFQRLEFLVRDWTEFDESMS 241
                  3333444444444444444445554444555444444444333333 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.5e-07
    PF02841.9   2 gitvtGkrLasLvqtYvdaInsGa.vPclenavlalaqiEnsaAvqkAiahYeeqmeqkv.klptetl...qelldlhrdcekeAievFmkrsf...kdenqkFqkeLkeslekkkedflkkn 116
                  g+ +  k L++ v+ Yv   + Ga  P     + a a ++n+ A +kA++ Y++ m++   +  + t+   +++++   ++e+ A ++F k +    k++  + +keL ++ + +k++++  n
  MMETSP0890-20130614|30944_1 329 GHFLGAKELGNFVKAYVGMFADGArFPQATTMLEATATANNRNAKEKALDIYNNIMDRACgTHREATFlpdEQFRTKISQAEHDAYNLFDKLANmgrKAAILDTRKELSDDFHRAKSHYKLMN 451
                  55666789***************758*******************************998555555545557999999999999*99999877511133444556777777777777777666 PP

>> PF05543.8  Staphopain peptidase C47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.8e-05     0.063      31     121 ..     358     444 ..     348     461 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
    PF05543.8  31 sallnatyntdkynaeavmrylhpnlqgedlqftgltpkemlkygksqGrdtqylnrmtsynevdkltknnkgiailgkrvessdgihaGh 121
                  +++l+at  +++ na++    ++ n+ +        t +e       q r    ++   +yn  dkl++  + +ail +r e sd+ h  +
  MMETSP0890-20130614|30944_1 358 TTMLEATATANNRNAKEKALDIYNNIMDR----ACGTHREATFLPDEQFRTKISQAEHDAYNLFDKLANMGRKAAILDTRKELSDDFHRAK 444
                  46899999999999999999999999765....456778888889999***************************************9764 PP

>> PF11076.3  Putative inner membrane protein YbhQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15     5e+02      94     120 ..      24      50 ..      21      61 .. 0.88
   2 ?    1.5   0.0     0.055   1.9e+02       6      52 ..     113     162 ..     107     193 .. 0.63
   3 ?    6.7   0.1    0.0014       4.6      64     104 ..     493     536 ..     489     540 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.15
    PF11076.3  94 rvlennlllalaglvilagpavvslla 120
                  r+le+n+ l la +   a  avvs++ 
  MMETSP0890-20130614|30944_1  24 RLLEKNFDLVLAKVPKDAKVAVVSVVG 50 
                  89*********************9875 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.055
    PF11076.3   6 rvrvatglscwq..imlh..llvvallvvgwmsgalvkvglglcalyavtv 52 
                  r r++tg+s w    ml   l+v+ l   g + +    +gl+ c++   t+
  MMETSP0890-20130614|30944_1 113 RQRMTTGISIWSepFMLApdLAVLILDTQG-LFDNETTMGLTSCIFGLSTL 162
                  6799*******8334553213443333344.44555677888887655554 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0014
    PF11076.3  64 arwrevgdvleeltttwyfgaalia...lwllsrvlennlllal 104
                  +r   v d+l+e+ t + fg+   +   +w ls  l+n ++ a+
  MMETSP0890-20130614|30944_1 493 QRCNAVEDFLKEVHTFFVFGTIAYSawkFWGLSTYLKNIVMNAV 536
                  677899**************866541226789999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:01.32
# Mc/sec: 989.40
//
Query:       MMETSP0890-20130614|30949_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 1161.05
//
Query:       MMETSP0890-20130614|30954_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-34  118.0   0.0    4.1e-34  117.8   0.0    1.0  1  PF05724.6 Thiopurine S-methyltransferase (TPMT)
      0.001   19.3   0.0      0.002   18.4   0.0    1.4  1  PF08241.7 Methyltransferase domain
     0.0013   19.1   0.0     0.0021   18.5   0.0    1.3  1  PF12847.2 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05724.6  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   9.1e-38   4.1e-34      14     196 ..       2     183 ..       1     186 [. 0.87

  Alignments for each domain:
  == domain 1    score: 117.8 bits;  conditional E-value: 9.1e-38
                  --TT--SSSTHHHHHHHHCHT-S---EEE-TT----HHHHHH-BTTBEEE---S-HHHHHHHHHH----CCCCCB---EE..EE........B.-TTTSTTTT-..ECEEEEESSCCCS-HHHHHHHHHHHHHHC-SEEE.EEEEECS-SSS--..-------HHHHHHCHT--EEEEEEEETT-TTT CS
    PF05724.6  14 qipfhqeevnpllkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvke..ysage.iellcgdvFtlraeelgkfdliydraalvAlppelreryakslaelLkpdgeglLvtldypqaehe..GPPfsvpeaeleallsagfkvaeleeedalee 196
                  +i fh  +vn  l k  + l++ka+ r+l+PlCGk++dl+ lA +  +vvGv+  e+A+++f +e++   +v e+++ +   +  g+ ++ + gd F +++   g+fd+ +dr+alvA++pe+r++y++ l + L p+++ lLv  +  + +    GPPf++++++++ l+ + f ++ +e+ed ++ 
  MMETSP0890-20130614|30954_1   2 RITFHMTDVNYILIKRESLLELKANSRMLIPLCGKTVDLAYLAGK-CNVVGVDAVEIALKQFISEHKA--QVIEFKNGNYtiSLNGHiLQYVVGDWFSFDR---GQFDAAFDRGALVAINPEDRPAYVQVLIRSLSPGAKLLLVATEHSPFKDGrlGPPFNLTKDQVHILFENFFSIQAIETEDRFHI 183
                  689****************************************97.68**************999998..4444444333244444415677899999877...566*************************************999988776568***************************99875 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.4e-07     0.002       5      94 ..      34     137 ..      33     138 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.4e-07
    PF08241.7   5 cGtglllealaerpaarvtgvDlseemlatakerlkeegle................lvvadaeelpfednsfDvvvssevlehl..edpekalkeiaRvLkpgGllv 94 
                  cG+   l++la +  ++v+gvD  e +l++   ++k++ +e                +vv+d   + f+ ++fD+ +   +l  +  ed+ ++++ + R L pg +l+
  MMETSP0890-20130614|30954_1  34 CGKTVDLAYLAGK--CNVVGVDAVEIALKQFISEHKAQVIEfkngnytislnghilqYVVGDW--FSFDRGQFDAAFDRGALVAInpEDRPAYVQVLIRSLSPGAKLL 137
                  7777778888888..***********9998888888888886677777777777655555553..4899***************9*******************9986 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.6e-07    0.0021      17     110 ..      38     139 ..      26     141 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.6e-07
    PF12847.2  17 lelarlrpgakvvgvDpseeslelarenaksldleeriellq............gdakeelsller............fDavllkgltldallal..deprrvlealpkllkpggrlvie 110
                  + la l+++++vvgvD+ e +l+++        +++ ie+++            +                       fDa+++ g    al+a+  +++ ++++ l++ l pg  l++ 
  MMETSP0890-20130614|30954_1  38 VDLAYLAGKCNVVGVDAVEIALKQFISEH----KAQVIEFKNgnytislnghilQ----------YvvgdwfsfdrgqFDAAFDRG----ALVAInpEDRPAYVQVLIRSLSPGAKLLLV 139
                  556667789********999888888776....7788999994444444433330..........3555555566668********....688888677778899999******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       316  (0.0231129); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 734.62
//
Query:       MMETSP0890-20130614|30963_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   27.8   4.8    2.3e-06   27.3   3.3    1.4  1  PF13229.1  Right handed beta helix region
    1.3e-05   24.3   3.6    1.6e-05   24.0   0.3    1.8  2  PF05048.8  Periplasmic copper-binding protein (NosD)
    0.00017   21.5   2.5      0.038   14.1   0.0    3.4  4  PF02415.12 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat


Domain annotation for each model (and alignments):
>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   3.3     5e-10   2.3e-06      56     156 ..       6     108 ..       2     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5e-10
    PF13229.1  56 ntisgnyiennsggiklsgssnntienntitnn...ggaGiylnynssnntitnNtisnng....gsGiyvegsssgnititnntisnnggaGiylinsssgitvsnN 156
                  +  s+n +++ +ggi+++ ss++ ++++ + +n   +ga iyl +  ++  i +N +  n+    + +++v+ +s +n   +++++++     iy+ + s+ +++sn+
  MMETSP0890-20130614|30963_1   6 CIFSNNIVSDRGGGIYVEHSSTIDLRESVFRSNhanRGAAIYLYS-HTSMSIVRNLFEANKalyyAGAVFVDRYSVANA--SHCIFKQAE-DTIYVTDLST-VHLSNC 108
                  567899999999999999999999999999999776666999987.999999999999999999999999999995555..999999997.9998888888.988887 PP

>> PF05048.8  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.3   3.6e-09   1.6e-05      90     145 ..       6      65 ..       3      76 .. 0.80
   2 ?    1.4   0.1     0.028   1.3e+02      30      67 ..      87     125 ..      65     152 .. 0.52

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.6e-09
    PF05048.8  90 ntisnNtisnneeGillsgssn.....ntisnNtisnngkgiflenssnntitgNriesnk 145
                  +++snN++s+   Gi+++ ss      + ++ N++ n g++i+l+++++  i++N +e+nk
  MMETSP0890-20130614|30963_1   6 CIFSNNIVSDRGGGIYVEHSSTidlreSVFRSNHA-NRGAAIYLYSHTSMSIVRNLFEANK 65 
                  57899999999999999999995555444555555.9999999999999999999999993 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.028
    PF05048.8  30 tisksrdgiylsessnntisnntisnn.ryGihlegssn 67 
                   +++ +d+iy+ + s + +sn+   n   +G ++e + +
  MMETSP0890-20130614|30963_1  87 IFKQAEDTIYVTDLSTVHLSNCSGLNAyVAGHDFEACAT 125
                  334444555555555555555533332344444444444 PP

>> PF02415.12  Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   8.4e-06     0.038       1      28 []       5      23 ..       5      23 .. 0.92
   2 !    5.7   0.0    0.0039        18       3      26 ..      34      47 ..      32      49 .. 0.88
   3 ?   -1.3   0.0      0.68   3.1e+03       4      25 ..      61      73 ..      60      75 .. 0.69
   4 ?   -3.1   0.0       2.6   1.2e+04       6      13 ..     139     146 ..     138     157 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.4e-06
   PF02415.12  1 sitFsnNtatvsftptpaaggGGAIyae 28
                 +++FsnN +         +  GG+Iy e
  MMETSP0890-20130614|30963_1  5 DCIFSNNIV---------SDRGGGIYVE 23
                 689******.........********75 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0039
   PF02415.12  3 tFsnNtatvsftptpaaggGGAIy 26
                 +F +N+a          + G AIy
  MMETSP0890-20130614|30963_1 34 VFRSNHA----------NRGAAIY 47
                 7999999..........******9 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.68
   PF02415.12  4 FsnNtatvsftptpaaggGGAI 25
                 F+ N+a           + GA 
  MMETSP0890-20130614|30963_1 61 FEANKA---------LYYAGAV 73
                 888999.........6666666 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 2.6
   PF02415.12   6 nNtatvsf 13 
                  +N++ +s+
  MMETSP0890-20130614|30963_1 139 YNSVSSSS 146
                  57775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       413  (0.0302077); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 705.84
//
Query:       MMETSP0890-20130614|30962_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   47.0   6.0      4e-08   32.7   0.1    5.1  6  PF00400.27 WD domain, G-beta repeat
      0.004   16.5   0.3      0.042   13.1   0.1    2.3  2  PF13360.1  PQQ-like domain
     0.0086   14.1   4.6        1.1    7.2   3.1    3.3  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.15   6.8e+02      23      33 ..      26      36 ..      14      37 .. 0.81
   2 !    7.9   0.0   0.00057       2.6      11      37 ..      59      83 ..      53      85 .. 0.85
   3 !   32.7   0.1   8.7e-12     4e-08       8      39 .]      97     128 ..      90     128 .. 0.94
   4 !    4.1   0.2     0.009        41       4      39 .]     138     172 ..     135     172 .. 0.84
   5 ?   -1.6   0.0      0.59   2.7e+03      31      39 .]     205     213 ..     186     213 .. 0.83
   6 ?   -2.0   0.0      0.75   3.4e+03      18      27 ..     240     249 ..     240     260 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.15
                 STEEEEEETTS CS
   PF00400.27 23 gpllasgSrDg 33
                 g +l ++++Dg
  MMETSP0890-20130614|30962_1 26 GDFLWTAGADG 36
                 889*******8 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00057
                 SSSEEEEEEESSSTEEEEEETTSEEEE CS
   PF00400.27 11 tspVtcvafspdgpllasgSrDgtirl 37
                 +++V +v++  +  l+a++S+D+ +r+
  MMETSP0890-20130614|30962_1 59 SAAVLSVDVVRN--LVATASSDRALRM 83
                 568899999999..********99885 PP

  == domain 3    score: 32.7 bits;  conditional E-value: 8.7e-12
                  ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                   +H s + cv++s dg++++sgS+D++i++Wd
  MMETSP0890-20130614|30962_1  97 NAHGSRIICVRISADGRCIFSGSADRCIKMWD 128
                  69*****************************9 PP

  == domain 4    score: 4.1 bits;  conditional E-value: 0.009
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++tlr   s++ +va++ +   + sg rDg +r Wd
  MMETSP0890-20130614|30962_1 138 VRTLRTP-SACHAVACNLSLDTIDSGHRDGYLRSWD 172
                  5677777.8888888888888999***********8 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 0.59
                  TTSEEEEEE CS
   PF00400.27  31 rDgtirlWd 39 
                  rD t++++d
  MMETSP0890-20130614|30962_1 205 RDATVHVYD 213
                  799999998 PP

  == domain 6    score: -2.0 bits;  conditional E-value: 0.75
                  EEESSSTEEE CS
   PF00400.27  18 afspdgplla 27 
                  afspd +++a
  MMETSP0890-20130614|30962_1 240 AFSPDASHVA 249
                  7999966555 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   9.2e-06     0.042      89     194 ..      19     133 ..      17     179 .. 0.65
   2 ?    0.8   0.0     0.054   2.5e+02     114     144 ..     235     267 ..     198     289 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.2e-06
    PF13360.1  89 valdaetGkllWssqlrs.............epiarlrssaspaia.....gdrvivgfssgklvaldlktGkvlWerplaaprgsselsrlgdiagrpviaggrvfassgsgrllal.dlatgr 194
                  ++++ae+G  lW+                   + ar +++ s+a+      +++v+ + s+ +l +ld+ tG++  +     ++gs+ +       +  ++a+gr  +s+   r++++ dl++ +
  MMETSP0890-20130614|30962_1  19 ICFEAEEGDFLWTA-GADgvsqrldvqtsskLSGARFLTPQSAAVLsvdvvRNLVATASSDRALRMLDAGTGRLKLQL--ENAHGSRII-------CVRISADGRCIFSGSADRCIKMwDLRSSS 133
                  68999999999994.444588888888877547777666666666667777999999999************995555..444444433.......33344445444444444577777777766 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.054
    PF13360.1 114 ssaspaia..gdrvivgfssgklvaldlktGkv 144
                   s +pa++     v+v+ s g+ v++dl+tG  
  MMETSP0890-20130614|30962_1 235 HSVRPAFSpdASHVAVPSSLGGCVIFDLSTGLA 267
                  334444444466899999999999999999965 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   3.1   0.00025       1.1     207     253 ..      44      91 ..      22     264 .. 0.88
   2 ?   -0.7   0.0     0.061   2.8e+02     141     178 ..     224     264 ..     201     282 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00025
    PF11715.3 207 k.....yrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  +      + ++++++ aa+l+v++     +++v+t s D+ LR+ +  tg +
  MMETSP0890-20130614|30962_1  44 QtssklSGARFLTPQSAAVLSVDV----VRNLVATASSDRALRMLDAGTGRL 91 
                  33344445578999999999****....89*****************99988 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.061
    PF11715.3 141 ssfsgrkppllvavta...vseselvvsladgglliltrss 178
                  s++ ++ p+ +++v     ++ s+++v    gg +i+++s 
  MMETSP0890-20130614|30962_1 224 SHDHFQVPSSAHSVRPafsPDASHVAVPSSLGGCVIFDLST 264
                  55566666666666557778999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 1044.38
//
Query:       MMETSP0890-20130614|30974_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 329.93
//
Query:       MMETSP0890-20130614|30976_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.072   13.6   1.7      0.072   13.6   1.1    1.7  2  PF13428.1  Tetratricopeptide repeat
       0.13   12.5   1.5       0.53   10.5   0.2    2.3  2  PF13812.1  Pentatricopeptide repeat domain
       0.14   12.1   0.2        1.7    8.6   0.0    2.5  3  PF01535.15 PPR repeat
        1.2    9.6   7.0       0.54   10.7   1.9    2.2  2  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   5.2e+03      13      21 ..      28      36 ..      20      42 .. 0.57
   2 ?   13.6   1.1   2.1e-05     0.072       2      26 ..      58      82 ..      57      84 .] 0.92

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.5
    PF13428.1 13 alGdpdeAi 21
                 ++G + eA+
  MMETSP0890-20130614|30976_1 28 HNGKLHEAA 36
                 444444443 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.1e-05
    PF13428.1  2 eallalarallalGdpdeAiallrr 26
                 +a++  ++a++++Gd++ A+++lr+
  MMETSP0890-20130614|30976_1 58 RAYAIAVNAYADAGDLQNALRWLRA 82
                 5889999****************98 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.21   7.1e+02      11      23 ..      35      47 ..      11      50 .. 0.70
   2 ?   10.5   0.2   0.00016      0.53       3      25 ..      59      81 ..      58      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.21
    PF13812.1 11 laksgrpeaAlal 23
                 +a++g+   +++l
  MMETSP0890-20130614|30976_1 35 AARRGELRVVEKL 47
                 4566666666655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00016
    PF13812.1  3 tyntlitalaksgrpeaAlalle 25
                  y++ ++a+a +g+ + Al+ l+
  MMETSP0890-20130614|30976_1 59 AYAIAVNAYADAGDLQNALRWLR 81
                 699***************99875 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.19   6.5e+02      11      19 ..      27      35 ..      21      37 .. 0.85
   2 ?   -2.0   0.0       1.2     4e+03      12      23 ..      37      48 ..      36      50 .. 0.69
   3 ?    8.6   0.0   0.00051       1.7       4      24 ..      61      81 ..      58      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.19
   PF01535.15 11 ckaGkleeA 19
                 +++Gkl eA
  MMETSP0890-20130614|30976_1 27 AHNGKLHEA 35
                 689*****9 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
   PF01535.15 12 kaGkleeAlelf 23
                 + G+l+ +++l+
  MMETSP0890-20130614|30976_1 37 RRGELRVVEKLM 48
                 778888788776 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00051
   PF01535.15  4 nslIsgyckaGkleeAlelfk 24
                  + +++y+ aG+l+ Al++++
  MMETSP0890-20130614|30976_1 61 AIAVNAYADAGDLQNALRWLR 81
                 56689************9985 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.25   8.4e+02      12      22 ..      27      37 ..      22      41 .. 0.72
   2 ?   10.7   1.9   0.00016      0.54       2      26 .]      58      82 ..      57      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.25
                 HH-------HH CS
    PF07721.9 12 lalGdldeAra 22
                 ++ G l eA++
  MMETSP0890-20130614|30976_1 27 AHNGKLHEAAR 37
                 56677777766 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00016
                 HHH---HHHHHH-------HHHHHT CS
    PF07721.9  2 rallaLArallalGdldeAraller 26
                 ra++    a++++Gdl  A+++l++
  MMETSP0890-20130614|30976_1 58 RAYAIAVNAYADAGDLQNALRWLRA 82
                 67788889***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.76
# Mc/sec: 264.86
//
Query:       MMETSP0890-20130614|30983_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 382.75
//
Query:       MMETSP0890-20130614|30993_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-51  173.7   0.0    6.4e-51  173.3   0.0    1.2  1  PF11397.3 Glycosyltransferase (GlcNAc)
     0.0087   15.6   0.0      0.014   14.9   0.0    1.3  1  PF13632.1 Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> PF11397.3  Glycosyltransferase (GlcNAc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.0   9.4e-55   6.4e-51     105     342 ..       3     267 ..       1     268 [. 0.87

  Alignments for each domain:
  == domain 1    score: 173.3 bits;  conditional E-value: 9.4e-55
    PF11397.3 105 yaRylasllyndedYvLqiDShtrfvkeWDeklieelerlestkavLsayPngyee.....ekseeeleketv...aalckaefesegivklr.......................srwikkarkleepvlqafvaagFlfadgefvrdvpfDphlpylFdGEEvlysaRlwtaGydlyaPkrllvfhlYsrskapkvwsehteesekkkwearrlrseeRvlyllgreavkeeaateteeividlkrYglgkersleeyeeyagidfa 342
                  ++Ryl sll+++e++++q+D+ht f ++WD+ li++     s+k++ s+yP++  +     +++  ++++ ++     +c a f +++i++++                         + kk++  + p  ++f+ agF+fa+++f+ dvpfDp+ p++F GEE+ +s+RlwtaG+dl++P r+++ h Y r+++pk+w+  +++  + + ++++ ++  Rv+  +g  +     +  + +   +++ +glg+ r l++y ++a++df 
  MMETSP0890-20130614|30993_1   3 FGRYLGSLLWFQEHFYMQVDAHTTFAHNWDSILIHDYALAPSSKPIFSHYPPSGPQrpgplNDNPYQVYHWELapgVCMCDAGFAEYDILRVGsmqrypfiefyppgcknnqetkeESENKKNECFALPRFSPFIGAGFVFANASFLFDVPFDPFTPFIFMGEELDFSTRLWTAGWDLFCPPRSILAHAYLRKQKPKFWGALQRSIGAGAHNSLQAYVLPRVKLKVGYPNI----QLDQSSLASHFDDFGLGTLRPLSDYLRIADLDFH 267
                  9**************************************************986653444322222222222212257999999*******99*****************99998844556667778999************************************************************************999999999999*******9998844444....4457788999**********************96 PP

>> PF13632.1  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.1e-06     0.014      66     119 ..     130     191 ..     123     213 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-06
    PF13632.1  66 lgrvlpsvGsgavlrrsalq.evggwd....essvsEDfdmalrlqraGyrvrfvpea....a 119
                  l r+ p+ G+g+v+  + +  +v ++d      + +E +d++ rl++aG++++  p +    a
  MMETSP0890-20130614|30993_1 130 LPRFSPFIGAGFVFANASFLfDV-PFDpftpFIFMGEELDFSTRLWTAGWDLFCPPRSilahA 191
                  567889*****999665555277.8885554559******************98887754332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.99
# Mc/sec: 699.54
//
Query:       MMETSP0890-20130614|30992_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-22   79.0   0.0    2.8e-22   78.3   0.0    1.3  1  PF04379.9  Protein of unknown function (DUF525)
  ------ inclusion threshold ------
       0.05   13.2   0.5        1.7    8.4   0.1    2.4  2  PF05347.10 Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> PF04379.9  Protein of unknown function (DUF525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   4.1e-26   2.8e-22       7      86 ..     141     223 ..     138     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 4.1e-26
    PF04379.9   7 peeeryvfaYtvtienegee.svqLlsrhwvitdadg.kveeveg.eGvvGeqPllapgesfeYtSgtvlktpsGsmeGsyqm 86 
                  ++ + y+faY+++++n g   +vqL srhw+i+d +g +v   +g +GvvG++P+lapge feY Sg  l+ p+G+++Gs+++
  MMETSP0890-20130614|30992_1 141 SATNAYIFAYRIRVSNVGGIdTVQLRSRHWIIQDTNGgSVVIPRGsPGVVGQTPTLAPGEIFEYVSGSELNAPTGTIQGSFNL 223
                  56788************99889**************96444445538**********************************86 PP

>> PF05347.10  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00024       1.7       3      21 ..      12      30 ..      11      40 .. 0.81
   2 ?    2.6   0.0     0.015     1e+02      22      36 ..      76      90 ..      56     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00024
   PF05347.10  3 vLsLYRalLRaarkfpdyn 21
                 v +LYRa LRa++++ d++
  MMETSP0890-20130614|30992_1 12 VRALYRASLRAIKSLGDRS 30
                 779*********9998887 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.015
   PF05347.10 22 areyirrriReeFrk 36
                 ++e + + +Re+Fr+
  MMETSP0890-20130614|30992_1 76 EQETLLKIVRERFRD 90
                 677888889999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.74
# Mc/sec: 877.58
//
Query:       MMETSP0890-20130614|30996_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-68  228.6   0.0    8.2e-68  228.2   0.0    1.1  1  PF02401.13 LytB protein


Domain annotation for each model (and alignments):
>> PF02401.13  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.2   0.0     6e-72   8.2e-68       3     278 ..      86     429 ..      84     432 .. 0.95

  Alignments for each domain:
  == domain 1    score: 228.2 bits;  conditional E-value: 6e-72
                  E-S--------HHHHHHHHHHHHH---.--EEES-SSS-HHHHHHHHH---EEESSG.......GGS----EEEE------HHHHHHHHHSS-EEEE---HHHHHHHHHHHHHHH---EEEEE-----TTT--------.............................----EE--SHHHHHH---S-TTSEEEEE-TTS-HHHHHHHHHHHHHHSTT-B-.......--S-S--HHHHHHHHHHHHHHT.....T-SEEEE---TT-HHHHHHHHHHHH---EEEE-SSGG.................G--HHHHTT-S..EE--B----S-HHHHHHHHHHH CS
   PF02401.13   3 laeprgfCaGVerAveiaeealqkseg.pvyvlgeivHNrsvvdrLrekgvkfveel.......kevpkgavvilsahGvspevreeleerglkvvDaTCPlVtkvhneveklakkgyeviliGkknHeEvigtlgvas.............................qekvlvvenaeevealklqeeeklavvtQTTlskdeteeivealkkrlkeveg.......lvsntICdATqerQeavrelae.....evdlvlvvGgknSsNtkrLleiakesgvksylidsae.................eikeewlkavk..tvgvtaGAStPdkvveevikkl 278
                  la++ g C+G er +e+a  a +k++  + ++++e++HN+ v++ L+++++ f+e++       + v+ g+vvil+a+G++ +++++ +e g++ vD+TCP+V+kv+n v +  +k+ + i++Gk+ HeE i+t+++ +                             +++++ +++a + +++++ + +k+++++QTT+ k et++i +++++++ +++          ++tICdATqerQ+a+ +++e     + d++lvvGg++SsNt +L+ei +++g + y+i++a+                   +e+wl++ +  t+gvt+GAStPd  vee ++++
  MMETSP0890-20130614|30996_1  86 LAKEWGLCWGAERSIELALAAVEKFPDrRKHITNELLHNPGVNQMLKDNDISFIEKTndggkkfETVQPGDVVILPAFGATLAEMQYFDELGVTTVDTTCPWVSKVWNVVDRQVSKDMTTIIHGKYSHEEAIATASFCKdylivkdiheaeyvcnyilnpgsteelskDNFMKKFAQAMSPGFDPDIHLKKIGIANQTTMYKRETAAIGKLFEATMIKKYPedasdrfAAFDTICDATQERQDAITDMVEdpdvsQLDFILVVGGFDSSNTAHLVEIPHNKGLTVYHINEADcisetntlthrlldgsiVTTENWLPTDRpiTIGVTSGASTPDAYVEEALERV 429
                  799**********************99899***************************99997777777***************************************************************************************************999********************************************9999988889999999******************973322256789***********************************************8777899***99989***************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.44s 00:00:01.23 Elapsed: 00:00:00.97
# Mc/sec: 1096.89
//
Query:       MMETSP0890-20130614|30991_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.9   0.0    2.1e-08   34.1   0.0    1.4  1  PF03099.14 Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> PF03099.14  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.5e-12   2.1e-08      15     125 .]      53     158 ..      40     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.5e-12
                  CHHHHCTEEEESEB-----EEEB-TTBBEEEEEEE-TSS.HC..CCCGGGHHHHHHHHHHHHH.EEE.CCTCGG--EETTTEEEE.TTEEEE--EEEEET....CEEEE-SS-B CS
   PF03099.14  15 eeleeggvvvarrqtgGrrvwhspggnlaysllllpelksfk..lsdleayvlllvlavlealgelgpgetgipvkikwpnDllv.ngkKiaGilvesrrgatlhhltlgvgin 125
                  + ++++ v+v rr tgG++v ++ +g++  +l+ ++ + +    ++d+ ay+ ++  +v++ l        g +v    + D+++ + +K++G ++ + r+++lhh + ++++n
  MMETSP0890-20130614|30991_1  53 NLVRRDQVPVLRRFTGGGTVVVG-KGTIVATLIANKHDTPCGafPRDIMAYTGDIYADVFHRL-------IGERVLSLREHDYVIdGSMKVGGNAQSIIRSRWLHHTSFLWDFN 158
                  567899*****************.999999999987665432114777777888888888888.......44444444699****7889***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.78
# Mc/sec: 777.28
//
Query:       MMETSP0890-20130614|31006_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:01.10
# Mc/sec: 858.33
//
Query:       MMETSP0890-20130614|31014_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   12.4   1.5      0.093   11.6   0.7    1.5  1  PF12183.3 Restriction endonuclease NotI
      0.058   12.4   8.5      0.079   12.0   5.9    1.1  1  PF09507.5 DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> PF12183.3  Restriction endonuclease NotI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   1.4e-05     0.093      20      60 ..      67     111 ..      53     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
    PF12183.3  20 elqCPFldkkce..kvskskaeislGvCsv..rkkegepvivCPi 60 
                  + +CP+ + +++  k++++ ++  l++C v  r++e+ ++ +CP+
  MMETSP0890-20130614|31014_1  67 QTPCPISGLPLPqfKLECPTTQEELPMCIVtgRHMEKDDWCICPN 111
                  578**99665542288999999*********99***********8 PP

>> PF09507.5  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.9   1.2e-05     0.079     114     197 ..     129     212 ..     116     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.2e-05
    PF09507.5 114 kkndskdsairgkqagpivnpevkrregv.gssplaaeaskalkktangkaaskpsksiaksevksksakktqdssketktekte 197
                    ++s ++a +   a pi+ +++kr++++  +++l++++ +++ +t ++++a k+++s++ +++k+ s+kk++ ++   ++ + +
  MMETSP0890-20130614|31014_1 129 MNESSTKQALDPVCAKPITLNQIKRASALeIEKALKPPP-DEDIPTNDEHSAGKKKSSSQPPSKKQISKKKKRHTNGHLSSTSPS 212
                  567889999999999**************7666666666.778*******99999999999999999999888877766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       579  (0.0423493); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:01.27
# Mc/sec: 445.31
//
Query:       MMETSP0890-20130614|31026_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 422.52
//
Query:       MMETSP0890-20130614|31035_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.1   0.0    1.9e-10   40.0   0.0    1.1  1  PF00176.18 SNF2 family N-terminal domain


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.4e-14   1.9e-10       1      46 [.      43      85 ..      43      89 .] 0.90

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.4e-14
                 TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00176.18  1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLke 46
                 yQ eg  wl +rea        iL+demG+GKTlq++al++a+ k+
  MMETSP0890-20130614|31035_1 43 YQEEGFGWLREREATDK---KAILSDEMGMGKTLQAVALLAADQKS 85
                 9************9877...********************986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 338.53
//
Query:       MMETSP0890-20130614|31046_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       461  (0.0337185); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.61
# Mc/sec: 306.42
//
Query:       MMETSP0890-20130614|31040_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-28   97.6   0.1    6.5e-28   97.2   0.0    1.2  1  PF11288.3 Protein of unknown function (DUF3089)
    0.00026   20.8   0.0    0.00054   19.8   0.0    1.7  1  PF12697.2 Alpha/beta hydrolase family
     0.0099   15.5   0.0      0.013   15.1   0.0    1.3  1  PF12695.2 Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.018   14.3   1.1      0.036   13.3   0.8    1.5  1  PF07545.9 Vestigial/Tondu family


Domain annotation for each model (and alignments):
>> PF11288.3  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   1.9e-31   6.5e-28       2     115 ..      38     147 ..      37     185 .. 0.89

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 1.9e-31
    PF11288.3   2 vdvFfvhPTvy.ldksewnadlddeea.ralarvvlaaqasafnevgrvfAPrYRqatlaafletdkeeaekalelaysDVkrAFaaylaeenegrpiiLaGhsQGsllllrLlre 115
                  +dvFfvh T++ ++++e+nad+ d+ + +   r ++  qa+afn  ++++AP YR +t+a        + ++ ++lay+DVk+AF a+  + ne+rp+iLaGhsQG++++lrLl+e
  MMETSP0890-20130614|31040_1  38 ADVFFVHGTMIgTSNTEGNADYRDRFErNFKLRDYILWQAAAFNVRCQIYAPTYRFSTFANIG-----NFKERFALAYDDVKAAFFAFR-KFNEERPFILAGHSQGAIHILRLLKE 147
                  7*********9566669********996777899*********************99887665.....667789*************96.688*********************97 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-07   0.00054      24     102 ..      83     163 ..      40     272 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.6e-07
                  TSEEEEE-----------S...S--HHHHHHHHHHHHHH--.....--EEEE--------HHHHHH----.EEEEEEE----- CS
    PF12697.2  24 gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl....rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgp 102
                  +++++ap ++   +    + + + +++   +d+ a+  a++     rp++l GHS+G++++l+++++   + + l +++p++p
  MMETSP0890-20130614|31040_1  83 RCQIYAPTYRFSTFANIGN-F-KERFALAYDDVKAAFFAFRKfneeRPFILAGHSQGAIHILRLLKEVDMDASFLGAVCPGAP 163
                  4456666666433322222.2.2233444455555544444477789*****************9886665555555555553 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.7e-06     0.013      27     111 ..      84     235 ..      40     283 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.7e-06
    PF12695.2  27 favvavdlpghgasegaaaakrvl............aadlldleriilvGhSlGGgvalelag...rddrvkglvllapfpdgedlakltl.....................................................pvllihGtr 111
                  ++++a+ ++++  ++  +  +r++             ++ ++ ++ il+GhS+G+  +l+l +    d+++ g+v+ ++ p +e+++++ l                                                     p+l+++G +
  MMETSP0890-20130614|31040_1  84 CQIYAPTYRFSTFANIGNFKERFAlayddvkaaffaFRKFNEERPFILAGHSQGAIHILRLLKevdMDASFLGAVCPGA-PCNESIPHTALwncalleckadqtmigkavvrrsgnnilshtldisqgknclpilgfdstahgiPTLFLNGYA 235
                  66777777777777666644444444344333344434444789******************96553355555555554.2344444444444444444555555555556666666666666666666666666666666666777776655 PP

>> PF07545.9  Vestigial/Tondu family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   1.1e-05     0.036      17      27 ..     284     294 ..     282     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
    PF07545.9  17 iaSvVDEHFSR 27 
                  iaS VDEHFS 
  MMETSP0890-20130614|31040_1 284 IASLVDEHFSS 294
                  9********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.63
# Mc/sec: 1156.34
//
Query:       MMETSP0890-20130614|31047_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 519.21
//
Query:       MMETSP0890-20130614|31052_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 191.71
//
Query:       MMETSP0890-20130614|31051_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.53
# Mc/sec: 741.51
//
Query:       MMETSP0890-20130614|31050_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   76.6   0.0    2.1e-21   75.7   0.0    1.4  1  PF00107.21 Zinc-binding dehydrogenase
    4.5e-11   42.3   0.5    2.2e-10   40.1   0.1    2.2  3  PF08240.7  Alcohol dehydrogenase GroES-like domain
    5.8e-10   40.0   0.0    1.1e-08   35.9   0.0    2.4  2  PF13602.1  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.015   14.7   0.5      0.025   14.0   0.4    1.3  1  PF00208.16 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
      0.018   14.4   0.7      0.033   13.6   0.5    1.4  1  PF01262.16 Alanine dehydrogenase/PNT, C-terminal domain
      0.062   12.8   0.5       0.15   11.6   0.3    1.7  1  PF02225.17 PA domain
      0.085   11.7   1.9       0.15   10.9   1.3    1.3  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   1.1e-24   2.1e-21       1     117 [.     172     296 ..     172     313 .. 0.92

  Alignments for each domain:
  == domain 1    score: 75.7 bits;  conditional E-value: 1.1e-24
                  ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETTTS-..........HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC----EEEEEEEHHHHHHCT--EEE--SSS CS
   PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinskded..........fvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggtsganvefdlrklllkektiqGsllgn 117
                  GvGla+v++Ak lGarv+a +s++ k+e+a + Ga + + +++ +          f + +++l+++ g+d v+++ g +++++  ++ l  gGr ++vg++sg+ ++++++ ll k+++++G ++g 
  MMETSP0890-20130614|31050_1 172 GVGLATVEVAKYLGARVVACASDQNKVEIALKKGAAAGLVYNTNNlqdkadhakkFRADLKKLCPD-GIDCVVDMLG-DPCLNPLIRSLNFGGRAIIVGFASGHIPKIPANILLVKHVSVLGLYWGA 296
                  9*********************************7666666666666*******************.**********.**********************************************998 PP

>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   1.1e-13   2.2e-10       2      62 ..      46     106 ..      45     110 .. 0.95
   2 ?   -0.2   0.0      0.39   7.5e+02      91     108 ..     108     125 ..     104     126 .. 0.86
   3 ?   -3.8   0.0         5   9.8e+03      52      63 ..     157     168 ..     149     171 .. 0.75

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.1e-13
                  TEEEEEEEEB---HHHHHHH--.TTTT--SSEE----BE-EEEEE----B------EEEE- CS
    PF08240.7   2 gevlvkvkaaGiCgsDlhivkgekelevklplilGhEivGiveevgegvkklkvGdrvvve 62 
                  g v v++k+aGi+  ++  ++g ++ + ++p+++G Ei+Giv++vg gv++++ Gd v++ 
  MMETSP0890-20130614|31050_1  46 GMVHVETKCAGINFGEILQLRGLYQEKLEPPFVPGNEISGIVKKVGAGVTSVAAGDAVIAL 106
                  6799******************************************************975 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.39
                  -----BSEEEECGGGEEE CS
    PF08240.7  91 ldGgfaeyvvvpekklvk 108
                  + Gg+a+ v++pe++++ 
  MMETSP0890-20130614|31050_1 108 RGGGWAKDVILPESQVFA 125
                  57***********99986 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 5
                  ------EEEE-- CS
    PF08240.7  52 klkvGdrvvvep 63 
                  ++k G+ vvv +
  MMETSP0890-20130614|31050_1 157 QIKSGETVVVTA 168
                  578899999865 PP

>> PF13602.1  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.25   4.9e+02      20      67 ..     162     208 ..     145     229 .. 0.62
   2 !   35.9   0.0   5.5e-12   1.1e-08      14     127 .]     227     352 ..     217     352 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.25
    PF13602.1  20 vDvvldtvg.eageelleallrvlggGrlvsigg..klltaaareggaark 67 
                    vv+ ++g   g +++e ++ +lg  r+v +++  +++++a   +++a+ 
  MMETSP0890-20130614|31050_1 162 ETVVVTAAGgGVGLATVEVAK-YLG-ARVVACASdqNKVEIAL--KKGAAA 208
                  468999999888888877774.887.78776664343344444..223333 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 5.5e-12
    PF13602.1  14 f......lagdgvDvvldtvg.eageelleallrvlggGrlvsig.g.........klltaaareggaarkllflfsvkan...eeraeeleelaalveaGklkpvvdrvfpLeeaaeAhrrlesgrarGKiVl 127
                  f      l +dg+D v+d++g + ++ l++ l     gGr + +g +         ++l + +  +  + ++   +    +   +   +  + + +     + +p+v+++fpL +a+ A++++ +++++GK+Vl
  MMETSP0890-20130614|31050_1 227 FradlkkLCPDGIDCVVDMLGdPCLNPLIRSLN---FGGRAIIVGfAsghipkipaNILLVKH-VSVLGLYWGATL----FndpHLFNNNTQFVNDAWRHAHFRPHVSQRFPLQDANLAIQAILNRQTTGKVVL 352
                  2233467789***********777777766665...669965555336777766664444444.222333333222....13352333347899999999*********************************8 PP

>> PF00208.16  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   1.3e-05     0.025       8      64 ..     137     195 ..     134     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
                  SCCC---HHHHHHHHHH.TT--CCC-EEEEE--.--HHHHHHHHHHHT--EEEEE.--- CS
   PF00208.16   8 eaTglGvvyyveemlkklgldslegkrvaiqGs.Gnvgsyaaelltelgakvvav.sDs 64 
                   a +l+v+y + +m+ + + +  +g++v++    G vg +++e ++ lga+vva+ sD+
  MMETSP0890-20130614|31050_1 137 SAAALSVAYGTANMALQHRAQIKSGETVVVTAAgGGVGLATVEVAKYLGARVVACaSDQ 195
                  5889*********999977776688999999998*******************982343 PP

>> PF01262.16  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5   1.7e-05     0.033      21      54 ..     162     196 ..     143     232 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.7e-05
                  -EEEEE.-------HHHHHHHH---EEEE--SSTT CS
   PF01262.16  21 akvvvi.GaGvvGlgAievakglgaevvaldkrpe 54 
                   +vvv+ ++G vGl+ +evak lga+vva    ++
  MMETSP0890-20130614|31050_1 162 ETVVVTaAGGGVGLATVEVAKYLGARVVACASDQN 196
                  45555516789*****************9876654 PP

>> PF02225.17  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   7.5e-05      0.15      47      74 ..     195     219 ..     159     229 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.5e-05
   PF02225.17  47 sekaevaqeaGAkgviiinpseaalpgg 74 
                  ++k+e a ++GA++ +++n   +++  +
  MMETSP0890-20130614|31050_1 195 QNKVEIALKKGAAAGLVYN---TNNLQD 219
                  89*****************...444444 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   7.8e-05      0.15      40     105 ..     137     204 ..     130     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.8e-05
   PF01041.12  40 vkhavavssGtaAlllaLralgigpGdeVIvpslt...fvAtanavlqlGakpvfvDvdpetlnldpaa 105
                  ++ a++v+ Gta + l  ra +i+ G++V+v+++      At++++ +lGa++v +  d++++ +  ++
  MMETSP0890-20130614|31050_1 137 SAAALSVAYGTANMALQHRA-QIKSGETVVVTAAGggvGLATVEVAKYLGARVVACASDQNKVEIALKK 204
                  56789999999888777777.56899*****999733359*******************9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.49s 00:00:01.08 Elapsed: 00:00:00.95
# Mc/sec: 892.96
//
Query:       MMETSP0890-20130614|31058_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-41  141.2   0.4    4.6e-41  140.4   0.3    1.3  1  PF03715.8 Noc2p family


Domain annotation for each model (and alignments):
>> PF03715.8  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.3   3.4e-45   4.6e-41       4     241 ..     133     385 ..     130     407 .. 0.85

  Alignments for each domain:
  == domain 1    score: 140.4 bits;  conditional E-value: 3.4e-45
    PF03715.8   4 lleavlkrvYssfvksskn.......tnlktlelinfmknsvaeLfg.ldeevsYqiaFkyirqLAihLRnalnnkkkeavksVynWqfihsldlWsrvlsaasrsesqlkpLiyplvqvilgvikl.iptaryfPlrlhlirsLirlsqatgvfiPvlslllevLesa...........elkkkpk......kstlkplDfevtlklskkylrskqyqkglieqvvellleylallsksiaFpElvlpvvvqLkrflksskne 241
                  l e  l++ Ys+f +++ +        n++    i+f+   va+Lf   ++++ Y  aF y+rqLA  +R+al   + +a  ++ +W f+h+ +lWs+v        + + pL++pl+q+  g+++l  ++a+y P+rlh+i++L  l+++ + ++P +  l+ +Le             +     +      +s++ ++ ++ +l ls + l+++ +q+++i++  +ll+++l +  ++i+ pEl +++v+ +kr+lk  k +
  MMETSP0890-20130614|31058_1 133 LTEYALRKSYSAFTATAGKqsatnaiKNARRAANIAFIAAAVANLFDiSNTKIGYRLAFGYVRQLALAVRSALADPQGNAASQILSWRFLHASRLWSAVA------TNAMTPLVFPLCQILFGALQLaGNQAKYAPYRLHCIKLLHALCARRELYVPTVKPLMTILEHFlttkivrkadpK-----SkkrkstTSLEAAVILDRILSLSDEDLHNRIFQDEIIRETTNLLSDWLEICRYTIGLPELLVVPVIDFKRILKAQKSS 385
                  5666777777777755433111002246677899*************88999**********************************************98......478******************88999*************************999999999988555444443332.....0333333557888889999******************************************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       990  (0.0724108); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.45s 00:00:01.37 Elapsed: 00:00:00.76
# Mc/sec: 1702.67
//
Query:       MMETSP0890-20130614|31094_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 177.66
//
Query:       MMETSP0890-20130614|31100_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.74
# Mc/sec: 686.52
//
Query:       MMETSP0890-20130614|31105_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.0   1.3       0.12   10.9   0.9    1.0  1  PF02898.10 Nitric oxide synthase, oxygenase domain
       0.32   11.3   2.0       0.64   10.3   1.4    1.6  1  PF12631.2  Catalytic cysteine-containing C-terminus of GTPase, MnmE
        8.4    5.8   8.2    2.6e+02    1.0   5.6    2.0  1  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF02898.10  Nitric oxide synthase, oxygenase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   2.5e-05      0.12      17      67 ..      14      64 ..       3      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.5e-05
                 HHHHHHHTT----HHHHHHHHHHHHHHHH-------HHHHH---HHHHHT- CS
   PF02898.10 17 ldqyyssikrskseaheerleevekeieatgtyelkeselvfgaklawrna 67
                 l+  y+ +k+   ++ +  l+ +e+  ++t++ +  ++el+  a++aw++a
  MMETSP0890-20130614|31105_1 14 LEAAYTDLKQRAQDQEKLALQCIEQAQNTTTSQSSDNDELTENARQAWKDA 64
                 6778999999999999999******************************98 PP

>> PF12631.2  Catalytic cysteine-containing C-terminus of GTPase, MnmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   0.00014      0.64      11      50 ..      22      62 ..       2      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
                 SHHHHHHHHHH---HHHHHHHHH--.--HHHHHHHHHHHHH CS
    PF12631.2 11 naRqreaLkqaleaLeealeelnag.spldlaaedLreAae 50
                 ++R ++  k al+++e+a++  +++ s+ d ++e+ r+A++
  MMETSP0890-20130614|31105_1 22 KQRAQDQEKLALQCIEQAQNTTTSQsSDNDELTENARQAWK 62
                 5788999999**********999887899**********97 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   5.6     0.056   2.6e+02      18      46 ..       3      31 ..       1      60 [. 0.65

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.056
   PF04977.10 18 alyqlkqeiaalqaelaklkaeneeLeae 46
                 ++++ +++ a+l+a + +lk++ ++ e+ 
  MMETSP0890-20130614|31105_1  3 EYHSAQKHSAELEAAYTDLKQRAQDQEKL 31
                 67777788888888888888887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1357  (0.0992539); expected 273.4 (0.02)
Passed bias filter:                      743  (0.0543446); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 255.35
//
Query:       MMETSP0890-20130614|31117_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-63  212.8   0.1    6.4e-63  212.6   0.0    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.0   4.7e-67   6.4e-63       3     307 .]      16     314 ..      14     314 .. 0.90

  Alignments for each domain:
  == domain 1    score: 212.6 bits;  conditional E-value: 4.7e-67
                  HG-----EEE...----------EEEEEGGGSTTSBCCHCHHHHHHHCHHHC---EEEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHH.C---EEEE-TT-SSSGGCHCCHHHH...HHHHHHHHHHS--TT-CHHHHHHHHT-HHCCCHHHH.----..-B--------HHHHHHCCCCC...THTT---EEEEEGGG-TT-...............S...----T...TT-GGGHHHHSS---E.EE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE-B CS
   PF00291.20   3 lgvgpTPlvrlpsallsklgganvflKlEslnptgSfKdRgaanallralakggkgvveassGNhGaavAlaaallglkativvpsgappekialir.alGaevilvvssvegdyddaaelaeka.lelvrplkgeildqsndpdviaGygtiglEileqlg.kpdpdavvvpvGgGgliaGiakglkel...ilpkirvigvepegsdalarslragervqldkkttia.glscgt..pldgelafelidelvd.evvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvltg 307
                  +    TPlv+   +   ++++++++ Kl++l+p gSfK+Rg+  ++++a+++g++gvv +s GN+G+a+A+aa+++gl++ +v+p ++p++ +++++ ++Ga vi +++ ++ ++  a+e  +++   lv+p+        +dp+ ++G++++  E +eql+ k+ + +++ +vGgGgl+aG+ +g+       ++k++vi+ve++g+d++a+s++ag++++ld++t+ia +l+ +t        a++l +++ d + + vsde+al+a  ++a++ +++vep+++aalaa+   +  + l  ++++++vv ++g
  MMETSP0890-20130614|31117_1  16 QLHIVTPLVQ---GPILEKNNCEIWYKLDCLQPPGSFKLRGLGKVVENAKRSGAAGVVSSSGGNAGIATAYAAKACGLECLVVLPITTPKATAEKLKlEYGASVIIEGDVWDTAHLKAQEISKARgWPLVHPF--------DDPTAWEGHASLVDECFEQLSpKIPH-CFITSVGGGGLLAGVLTGIERNlsrFEKKPTVIAVETHGADSFAQSFAAGKPITLDAITSIAkSLGARTpsSTILTNALQLSKDSIDlKSLVVSDEQALRATIRFANEYRHLVEPACGAALAAIHHTP--SIL--PDDSTIVVEVCG 314
                  56678*****...44556789*********************************************************************988888846************************9989******........********************654443.8*******************99*97338******************************99999***9995534444556667777779889*********************************8754..555..677888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.78
# Mc/sec: 1050.71
//
Query:       MMETSP0890-20130614|31129_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.7   3.0        1.3    9.1   1.9    2.1  2  PF00861.17 Ribosomal L18p/L5e family
       0.14   11.4   1.5       0.22   10.8   1.1    1.3  1  PF05951.8  Bacterial protein of unknown function (DUF882)


Domain annotation for each model (and alignments):
>> PF00861.17  Ribosomal L18p/L5e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3     0.011        72      54      86 ..      53      85 ..      32      87 .. 0.84
   2 ?    9.1   1.9   0.00019       1.3      10      76 ..      55     117 ..      47     121 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.011
                 CSCCCTT----TT--SHHHHHH---HCCCHHHH CS
   PF00861.17 54 lskelkkyglkvgltntaaAklvGlllAkralk 86
                 ++k++++  ++v+ ++  aA+ v++l A+r+++
  MMETSP0890-20130614|31129_1 53 IEKQVNTRKIQVSENKARAAARVAELEAQRMIN 85
                 567788888899999999***********9986 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00019
                  HHCCCCCCCCTSSS-CEEEEEESSCEEEEEEE-SS---EEEECCCSCCCTT----TT--SHHHHHH- CS
   PF00861.17  10 rlvvqrknkgttekpRLvVrrsnkhiyaQiiddtkegdlvlasalskelkkyglkvgltntaaAklv 76 
                  ++v++rk+++ ++k R  +r+      aQ +  + ++d++++sa++++ k+y lk+ ++n aaA  +
  MMETSP0890-20130614|31129_1  55 KQVNTRKIQVSENKARAAARVAE--LEAQRM-INATRDIAIVSAYEEDAKNY-LKRATDNLAAADFT 117
                  55666666666666666666543..345533.35678*************99.69999*****9765 PP

>> PF05951.8  Bacterial protein of unknown function (DUF882)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1   3.2e-05      0.22       5     103 ..      17     119 ..      13     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.2e-05
    PF05951.8   5 etrslklknlhtgekaeivykengkylsealkkldkllr..dfrrnevtrmdkrlfdlllqv..krklgskeeiqvvsgyrsPatnallrsrskgvakksyhm 103
                    r+++lk+l++ ++ae++y++  +  +++++k  ++ +  + r+ +v++   r   ++ ++  +r ++++  i +vs+y   a n l r+  +  a +  h+
  MMETSP0890-20130614|31129_1  17 AQRKIRLKELKALDEAEANYVKAIEEREKEIEKEIQIEKqvNTRKIQVSENKARAAARVAELeaQRMINATRDIAIVSAYEEDAKNYLKRATDNLAAADFTHI 119
                  57999***************99999888888765555541256888888888899999986522678999999*********999987777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1591  (0.116369); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.63
# Mc/sec: 905.29
//
Query:       MMETSP0890-20130614|31135_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.54
# Mc/sec: 576.90
//
Query:       MMETSP0890-20130614|31140_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   12.9   6.3      0.054   12.5   4.3    1.2  1  PF12072.3 Domain of unknown function (DUF3552)


Domain annotation for each model (and alignments):
>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.3     4e-06     0.054      81     114 ..      61      94 ..      52     109 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-06
    PF12072.3  81 qrqEkRllqkeetLdrkeeslekkeekleekeke 114
                  q+    l ++e+ Ldr+e++l+++e+kl  +ek 
  MMETSP0890-20130614|31140_1  61 QERKSNLDDREKLLDRRERNLDERERKLILREKA 94 
                  4444455556666666666666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       576  (0.0421299); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 436.06
//
Query:       MMETSP0890-20130614|31138_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-22   78.3   1.4      5e-22   77.3   1.0    1.6  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.081   13.2   0.5       0.17   12.1   0.4    1.5  1  PF13198.1  Protein of unknown function (DUF4014)


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   1.0   7.2e-26     5e-22       1      64 []       3      62 ..       3      62 .. 0.94

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 7.2e-26
                 HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26  1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64
                 +yY+iL+v+k+a+ +eI+ aYr+l+lk HPD+ ++ +   ee+fke+n AyevL+d++kr++y+
  MMETSP0890-20130614|31138_1  3 NYYKILEVKKEANVKEITAAYRRLSLKAHPDR-PGGS---EEAFKELNRAYEVLKDETKRKQYN 62
                 7*******************************.5555...5*********************96 PP

>> PF13198.1  Protein of unknown function (DUF4014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   2.5e-05      0.17      12      67 ..     196     254 ..     191     259 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
    PF13198.1  12 ksRkkefLFlilfllllvPisPlilvyligk....ilEllielYrkvvwksFnkLdnkle 67 
                  k+R+  fL li f l+l+P+s +i++ l+g+    il+  +++    v ++Fn+ d  + 
  MMETSP0890-20130614|31138_1 196 KARIWFFLKLIAFELFLLPLS-FIFFQLAGHaaneILNHALDKLALQVREEFNRADAEIS 254
                  789999**************9.999*****954444555555555567778887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.66
# Mc/sec: 1031.16
//
Query:       MMETSP0890-20130614|31157_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 357.67
//
Query:       MMETSP0890-20130614|31172_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-23   82.2   0.0    5.7e-23   81.7   0.0    1.2  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
      0.003   16.3   0.0     0.0055   15.5   0.0    1.3  1  PF08943.5  CsiD


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   8.4e-27   5.7e-23      24     258 .]      26     317 ..       8     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 8.4e-27
                  HHHHHHHHHHHH---EEEE---S..----TTT-----......---....--------SSBS--TT..-SSGGG----....--SB-S-TTSSS----EEEEEEE---.----EEEB---HHHHHHHHHHHHHHT.TEEEEEE----SS-.............................................--EEEEEESEEE----EEEE---TT......TB..................-S---S-HHHHHHHHHHST..TT-EEE------EEEE-TTT-BB----------S-EEE-EE CS
   PF02668.11  24 edlaelrealaehgvvlfrglpl..speqfeelarrf......gpleqsprntfygetwdvrsvka.nvkdaaytpedttralplHtDlsylesppgvqlLhclenpa.eGGetlfvdgfaaynaLspelkella.egltyvysndgery............e...............................eespekrhPlvrthpvtgekvlyvnp..latkiqgl...............vtlaeseellkaledhltdp..eftyrhkwqeGdlvifdNrrvlHgrtafddetgeRhllray 258
                  ++ +e+ + l ehg + +rg++l  ++e f+++ +++      +p+++s+   f        s+   +  ++++  ++    ++lH +++ ++  + + ++ c  +++ eGGe l++d ++++++L+p++ +++  +++++  sn + +             +                               +  +e++   + +hp t+ + ++ n   +a     l               v++++ +++++ + dh+++   ++   + +q Gd+++ dN+r+lHgr+ f   +g+R + +++
  MMETSP0890-20130614|31172_1  26 KNKDEIGKKLIEHGCIWLRGFDLmkTEEGFRAMYEALemepclDPIHTSGLRAF-----ASESDAIyEEVNKQNLRTH---YIGLHQEST-HKKTATFGAFVCFFPATiEGGEFLIADAAKILKDLDPKIAQEIYeKKIRISVSNLDLDLlantgplkdsllNgakeaintivapkfdmdlemiygadgkpyrlQ-AIEQIASPINRHPITKTPLWFCNIhnHARY---LrdnrpcnvpevgmteVYFGDLSPIPHHILDHINEIseKNIQHIPMQSGDVLLCDNYRILHGRDIF---QGDRYHAVTW 317
                  57899*****************889************76544446655554444.....2233222556666666666...8******77.777888899999998889**************************669999999999988888777766555055666777777788888999999888877742.444555557779999999999998533333...233456777788889999***************86677****************************...9999988776 PP

>> PF08943.5  CsiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     8e-07    0.0055     250     282 ..     278     310 ..     269     314 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8e-07
    PF08943.5 250 sskntlevklpvGsllvlnnyfwlhGrdkfekn 282
                  s+kn+++++++ G++l+ +ny  lhGrd f+ +
  MMETSP0890-20130614|31172_1 278 SEKNIQHIPMQSGDVLLCDNYRILHGRDIFQGD 310
                  578999***********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.81
# Mc/sec: 1056.17
//
Query:       MMETSP0890-20130614|31165_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-43  146.7   0.1    2.8e-43  146.1   0.1    1.3  1  PF02803.13 Thiolase, C-terminal domain
    7.3e-26   90.6   0.1    1.1e-25   90.0   0.1    1.2  1  PF00108.18 Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02803.13  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.1   4.1e-47   2.8e-43       3     122 ..     135     254 ..     133     255 .. 0.98

  Alignments for each domain:
  == domain 1    score: 146.1 bits;  conditional E-value: 4.1e-47
                  -SEEEEEEE-----GGG-----HHHHHHHHHH----CCC-S-BEE--SBHHHHHHHHHHTT-GGCCBS-----------------HHHHHHHHHHHHT..----EE---------EEEEE CS
   PF02803.13   3 plakirsfatvgvdpeilglgPayaikkalkkaGltvedidlfEinEAFaaqalavakeldldlekvNvnGGaialGHPlGasGaRilvtllselkkeggklglaalCigggqgvalvie 122
                  +l+ +r+fat g+dp+++g+gP+ +i+k+l ka l++edidl+EinEAF+++ l++++el++d+  vNvnGG++a+GHP+G++G+R++ ++l e ++++ k++++++Cigggqg+++++e
  MMETSP0890-20130614|31165_1 135 MLGILRQFATCGCDPDEMGVGPVKVIPKLLAKAQLSIEDIDLWEINEAFSSVPLYAMRELGIDPAIVNVNGGSVAIGHPFGMTGSRMVGHILLEGQRRKVKYAVVTMCIGGGQGAGALFE 254
                  68899**************************************************************************************************************99886 PP

>> PF00108.18  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.1   1.6e-29   1.1e-25     156     263 ..       7     125 ..       2     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 1.6e-29
                  B---HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHH---HTTTEE-EEE.....-----......EEE-S-TTS-TT--HHHHCCS-BSSS-..-----B---B-------EEEEEEEH CS
   PF00108.18 156 hmGitaenvakkfkisReeqDefAlrSqqkakkAqkeGkfkdeivPvkvkt...rkgke......kvvdkDegirkettlekLaklkpaFkk..eeGtvtAgnaSqlnDGaaavllmse 263
                   m  ta+ +a++++isR++qD++A++ q++ + Aq++  f++ei  +++k+   +k+++       ++dkDe  r++tt e++a+l+p+  k  ++ tvtAgnaSql+DGa+a llm +
  MMETSP0890-20130614|31165_1   7 AMIETADILAHRYGISRMMQDAYAVECQRRTALAQENDLFQTEIFSLQTKMkiiDKETKqesfidCIIDKDECNRPGTTYENVASLEPVRLKsdPNATVTAGNASQLSDGASACLLMDA 125
                  57889****************************************99988766633333344666799********************976622589********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1141.54
//
Query:       MMETSP0890-20130614|31170_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.7e-159  530.2   0.0   3.3e-159  529.9   0.0    1.1  1  PF01179.15 Copper amine oxidase, enzyme domain
    2.2e-17   62.8   0.0    5.3e-17   61.6   0.0    1.6  1  PF02728.11 Copper amine oxidase, N3 domain


Domain annotation for each model (and alignments):
>> PF01179.15  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.9   0.0  4.8e-163  3.3e-159       1     412 [.     147     553 ..     147     555 .. 0.98

  Alignments for each domain:
  == domain 1    score: 529.9 bits;  conditional E-value: 4.8e-163
                  --EEE------EEE-..--EEEETTEEEE----S----EEEEEEEE--E-EEEEEEEEEEEEEEE----STTCCC-EEE----------BE-------S-TTSEEEEEEEEESSSSEEEEEEEEEEEEEEE-ESEEEE-SCC-SEEEEEEEEEEEEEEEEETTEEEEEEEEEE----EEEEEEEE----EEE------GGSB-ECETTEEEB-EEEEEEEEEEE-----B-EEEEEEEEEECCEETTCCCEEEEEEEEEEEEE-BGGGHEEE--TT--EEEEEEECCCE-TTS-EEEEEEE--------S-TTSHHHHHCGGGGSSEEEEE--TT---SS-TTTTT-TTS--GCCCHTTS-B-SSSBEEEEEEE-EEE---GGGSSS---EEEEEEEEECSSSSSSTTTTS--S CS
   PF01179.15   1 PleivqPeGpsFkvd..gnevewqkwsfrvgfnsreGlvlsdvrykderkRkvlyrlslsemvvpYgdpepphsrkaalDlgeyglGklansLklgcDclgeikyldavladsegepvtiknaiCifEedagilwkHtdfrtgkaevrrnrkLvvrtiiTvaNYdYifdwifyqdGsielevkatGilstkalaegeeekygtevapgvlaavHqHlfslrlDldvdGekNsvveedlvpkpvkvkseenprgnaftlektvletekeaaldldsetartlkivnenkknkvgkpvgYklvpaesaallakedslvakraafakkqlwvtkykdselyaageytnqssgdeglakwikdnesieneDiVlWvtfGltHvpraEDfPvmpvesvgfllrPvnFFdenpaldvpps 412
                  P+ i+qP+G+sF ++   +e++w +ws+ +gfn+reGl+l+d+++ ++    +lyr+sl+emvvpYg pe  h+rk+++D+geyglGklansLkl cDclg+i+ylda++++++g+ vti+naiCi+Eed+g++wkH+dfrt+++++rr+rkLv+++i+Tv+NYdY+++++f+ dG++e+evkatGi++t+a+ + +e+kyg ev+pgvl+++HqH+f++rlDl++dG++Nsvv+ d+ ++p+   s++np gna++ ++++le e    +d + ++ r++k++n+nk+n+v kp++Ykl p+++ + ++++ sl  +raaf+ + lw+t+y+++e y+ag+++n+s+g+ gla ++++++ i n+DiV+W++fG++H+pr+EDfPv p+ s+gf+l+P++FFd+np+ld+p++
  MMETSP0890-20130614|31170_1 147 PIIIQQPQGVSFCLNreTHEINWFQWSMIIGFNAREGLTLHDIKFAGRP---LLYRVSLAEMVVPYGTPEYGHYRKNVFDIGEYGLGKLANSLKLACDCLGSIEYLDAHIVARNGDLVTIQNAICIHEEDNGLAWKHYDFRTERTDSRRARKLVISFIATVGNYDYALYYYFHVDGTFECEVKATGIINTTACIPYSEQKYGAEVSPGVLGHIHQHIFCARLDLAIDGDSNSVVQIDTLQEPA--ASPQNPWGNAYYHNESLLEFE--QGCDENLSSMRYWKFINSNKRNAVDKPTAYKLEPTSTVTPMVQPFSLSGRRAAFTMHPLWITPYDKTEYYPAGDFMNHSDGSSGLAAYVAKKRPIVNKDIVAWINFGVHHIPRPEDFPVQPCISTGFKLMPSGFFDRNPCLDLPKT 553
                  899***********76699***************************988...*********************************************************************************************************************************************************************************************98..9*******************5..55688889***************************************************************************************************************************************986 PP

>> PF02728.11  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   7.7e-21   5.3e-17       1      94 [.      19     117 ..      19     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 7.7e-21
                  S---HHHHHHHHHHHHTGHHHHHHHHHCCTCGGGGEEEEEEE-S..--TTGG...---EEEEEEEE-SSTT.-GGGSEES-EEEEEETTTTEEEEEEEE CS
   PF02728.11   1 ppvlleeyaeveevlkedpefiealkkrglenlskvvlapltvG..yfgeas..egrRllkalvyyrdesd.nlyahPiegleilvDldakkvieiedr 94 
                  p++++e ++e+e+++k dp+fi+a+++rg+ ++s v+++p++++  + + ++  ++  ++    ++r++++ n yahPieg++++vD+ ++k+++++d 
  MMETSP0890-20130614|31170_1  19 PMISAEYFDEIENLVKADPDFIKACARRGISDMSLVCVDPWSSAgsWKEHEEteKDFFVSHTFAWVRSKKNdNHYAHPIEGVNAVVDISSLKILRVDDY 117
                  7899999**********************************9976688877753455566777788877778**********************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.82
# Mc/sec: 1706.67
//
Query:       MMETSP0890-20130614|31177_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.86    9.1   6.9        2.9    7.4   4.8    1.9  1  PF09769.4  Apolipoprotein O
        5.1    5.4   8.0        6.4    5.1   5.5    1.1  1  PF04791.11 LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.8   0.00042       2.9       6      97 ..     263     359 ..     194     363 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00042
    PF09769.4   6 edskpvppeelpiytkpeeeakllgensl..ysvrptdrLeaqirsaRlfleeklsavedavnt.vksrvldtersvtstvaslkpppee...llPgl 97 
                  ++++++    +p +++ e+++++ +++s   + +++ ++L++q ++a +  + +++++++a+n+ + ++++++++s +   ++l+ +p+    ++P+ 
  MMETSP0890-20130614|31177_1 263 KKVANT-AASVPSEDNDESASESDNKKSKmnVRKTSIKQLKKQATTAKKLANAEFKRAKNAINSeGRKAIESIQQSLQARLDYLNFQPPRwtaFIPKR 359
                  333332.2233333333333333333333568888999************************96377888999************9999888888875 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.5   0.00093       6.4     198     300 ..     214     320 ..     205     398 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00093
   PF04791.11 198 aekledekeeaessvddilesvdrl..srlledveeqisksateegklsrelkkaaesnsqeeds...laldreenkivkseeklllikeedlksletlknkkaqrkv 300
                  ae  ++++ee+++ vd + ++ ++      ++d+ ++   ++te ++ s+++++ a s  +e +    ++ d++++k ++ ++ ++ ++++++   ++l n++ +r  
  MMETSP0890-20130614|31177_1 214 AEAFKQKQEEKKEAVDTTKKKQEKDssAAAVKDTTDNGNDIKTEISSNSKKVANTAASVPSEDNDesaSESDNKKSK-MNVRKTSIKQLKKQATTAKKLANAEFKRAK 320
                  67778899999999999988876653467789999999999999999999999988776655544000344444444.345667788888888888888887644333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2125  (0.155427); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:01.04
# Mc/sec: 935.50
//
Query:       MMETSP0890-20130614|31182_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-21   74.2   0.0    1.5e-20   73.2   0.0    1.5  1  PF01612.15 3'-5' exonuclease
    3.9e-18   65.3   0.0    1.7e-17   63.3   0.0    1.9  2  PF04073.10 YbaK / prolyl-tRNA synthetases associated domain
  ------ inclusion threshold ------
       0.14   12.0   0.0        0.3   11.0   0.0    1.5  1  PF10262.4  Rdx family


Domain annotation for each model (and alignments):
>> PF01612.15  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   3.3e-24   1.5e-20       4     171 ..      92     253 ..      90     256 .. 0.93

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 3.3e-24
                  E-SHHHHHHHHHHHTTSSEEEEEEEEC-TTTTTSSBBEEEEEEE-SSEEEEECTTTTTTTHHHHHHHH.T-TTSEEEE--HHHHHHHHHHH-----SSEEEHHHHHHHCCHHCT-SHHHHHHHHCS.---GCTTTTS-TT.CSS-THHHHHHHHHHHHTHHHHHHHHHH CS
   PF01612.15   4 vtteeeleelieelknlkvvavDtEttsldlisatlrlaliqigtkeeayiidpleleddlellkkll.edenitkVghnakfDlevlardfgielenlfdtmlaaavldyeeshsLasLaekllgeleldkeeqiakwqkarplleeqleYAaeDadvllrlfkkLek 171
                  v+te +l+++ +el+n++v+a+D E+ + d    + +  l q+ t e+ ++id ++++d+ + l +ll e+ + ++++++  +D+  l+  ++   + l + ++ +   +  e  +La+ +   lg   l+k  q+++w   rpl++eq++YAa+Da vll l+++L  
  MMETSP0890-20130614|31182_1  92 VDTEIGLQNAQKELLNAPVLAMDVEWPPNDR---KAKASLLQLATPEKIFLIDLYAIQDNASCLDELLiENMQPPIFIFGGMNDVTKLKSSYDSFFSKLQCSRFVELQSSRAE--GLATAVYAKLG-SRLSKRLQCSDWG-HRPLSREQMRYAALDAFVLLALADALMC 253
                  8999***************************...******************************99864788999***************99999999999888887777777..9*****999**.*************.************************9975 PP

>> PF04073.10  YbaK / prolyl-tRNA synthetases associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.32   1.5e+03      61      85 ..      52      85 ..      51      96 .. 0.73
   2 !   63.3   0.0   3.6e-21   1.7e-17      16     122 ..     278     380 ..     273     381 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.32
   PF04073.10 61 laseeelaellgvepGavgPlglk.........a 85
                 +a +e+++++l+ ++ +++ ++ +         +
  MMETSP0890-20130614|31182_1 52 FARDENVRAALQSARSYLTVVSSEdgnildiseD 85
                 799999*****99999999999865555444444 PP

  == domain 2    score: 63.3 bits;  conditional E-value: 3.6e-21
   PF04073.10  16 vdpeaiaKtlvlkdkkgelvlvllpgdreldlkklakalgakklrlaseeelaellgvepGavgPlglkaagvpvllDeslleyervvvgagengatlelspedlrd 122
                   ++ +iaKtl l d +++ +l+++p d++ld+++l+++ g +++rl+++ +l  l+g+ +G++gP+g    g pv+lD+ l+++  +++g+g ++ ++ +    l +
  MMETSP0890-20130614|31182_1 278 YPEVRIAKTLALTDENQKRLLCVIPLDHRLDFDALSSVSGDSSFRLVHQGRLSPLFGFDKGSIGPIGP---GAPVILDSCLTDEF-IACGCGDPSWHIVMHGRALTK 380
                  57889*********9999*************************************************6...6***********87.************999887766 PP

>> PF10262.4  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.5e-05       0.3       3      30 ..      12      39 ..       4     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.5e-05
                 EEEEE-TTTT-HHHHHHHHHHHHHH--- CS
    PF10262.4  3 vtieYCtkckwrnraaelaqellstfpe 30
                 + i+ C  c+  +ra++l++ell   ++
  MMETSP0890-20130614|31182_1 12 ALIQTCRECGHSKRAQKLEKELLADLDQ 39
                 57999******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1256.55
//
Query:       MMETSP0890-20130614|31200_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-26   91.9   7.7      3e-26   91.9   5.3    2.3  3  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.32   4.4e+03       8      26 ..      13      31 ..       9      34 .. 0.67
   2 !   91.9   5.3   2.2e-30     3e-26       1     122 [.      88     206 ..      88     207 .. 0.98
   3 ?   -1.3   0.2      0.15   2.1e+03      91     112 ..     220     241 ..     216     246 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.32
    PF09335.6  8 vaaGvlfglllgtlvtllg 26
                 +++ +++gl+lg+l+ ++g
  MMETSP0890-20130614|31200_1 13 IFGVLAVGLGLGLLILAAG 31
                 4555556777888877776 PP

  == domain 2    score: 91.9 bits;  conditional E-value: 2.2e-30
    PF09335.6   1 lPsevllvaaGvlfglllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsallllrllPivprdlvnyvaGllrvsfkrFllatfigsipwaflyaylGs 122
                  lP  +l++ aG+lfg + gt ++l++a+++a +++l+gr+l++ ++++ + +++++++   +++ v+r gf+++lllrl+Pi+p++l+ny+ Gl+ v f ++l+at++g +p + ly+y G+
  MMETSP0890-20130614|31200_1  88 LPAVPLTASAGYLFGAVQGTGIVLIAATIAAGISFLIGRFLLRGWVESIASESEQFRA---IDNAVKREGFKIILLLRLSPIFPFALSNYFYGLTAVDFFPYLAATLLGFAPGTALYVYGGE 206
                  69999*****************************************************...**********************************************************996 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.15
    PF09335.6  91 vaGllrvsfkrFllatfigsip 112
                  +a+++++++  ++ + + g+++
  MMETSP0890-20130614|31200_1 220 AASAMPFPWYVYAGFLVSGIAL 241
                  5667777777777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       529  (0.0386922); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:00.73
# Mc/sec: 860.06
//
Query:       MMETSP0890-20130614|31211_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 511.22
//
Query:       MMETSP0890-20130614|31233_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 537.25
//
Query:       MMETSP0890-20130614|31239_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 304.30
//
Query:       MMETSP0890-20130614|31244_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 540.07
//
Query:       MMETSP0890-20130614|31256_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-35  121.7   0.0    3.8e-35  121.2   0.0    1.1  1  PF07859.8  alpha/beta hydrolase fold
    8.1e-06   26.1   0.2    1.3e-05   25.3   0.1    1.3  1  PF00975.15 Thioesterase domain
    1.3e-05   25.0   0.5    2.4e-05   24.2   0.3    1.4  1  PF12697.2  Alpha/beta hydrolase family
    4.5e-05   23.1   0.0    6.5e-05   22.6   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
     0.0049   15.4   0.0     0.0057   15.2   0.0    1.1  1  PF10340.4  Protein of unknown function (DUF2424)
  ------ inclusion threshold ------
      0.031   13.9   0.0      0.048   13.2   0.0    1.2  1  PF01083.17 Cutinase


Domain annotation for each model (and alignments):
>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   1.7e-38   3.8e-35       1     195 [.     106     291 ..     106     297 .. 0.88

  Alignments for each domain:
  == domain 1    score: 121.2 bits;  conditional E-value: 1.7e-38
                  EEEE------SS-TGGG...HHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES----TS-CHHHHHH.THHCTSTTSS-.HHHHHHHHHHHSSGGGGGSTTTSGGGSS-HTT---EEEEEEEE-TTS----HHHHHHHH--- CS
    PF07859.8   1 llyfHGGGfvlgsadth...dalcrrlakelgavvvsvdYrlAPehrfPaavedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgtdlertesesqelaeeladgpllt.rdamdlfwrlylpeadrddplaspllasdlsglpptlvvvaelDplrdegeayaerlraagv 195
                  ++y HGGGfv g+a+     d + + l + +  + vsv+YrlAPeh++Pa ++d+laa+r ++ +       +sr ++aG SaG+ La+ +al + +++ ++i  ++l+ P  +  ++ s  ++     ++g+ ++  ++++++w+ y ++  r++ +++ +l+ +++ lpptl+++++ Dplrd+g  + ++l++++ 
  MMETSP0890-20130614|31256_1 106 IIYAHGGGFVAGDAQCGtglDYFNELLKRGISFRWVSVEYRLAPEHPYPAGLQDVLAATRMMLLR-----FPQSRFALAGVSAGACLALEAALDLNAQESQRIHSLALFFPFLEP-AC-STPFK-----KHGYRWNfGKWLQWCWKGYYNDTIRTKGVLNRPLE-QFAALPPTLIATSKADPLRDDGTLLFAKLKKNNA 291
                  69************999899999999*************************************99.....99********************9999998899*********8844.33.33332.....45666665899*********866666555555545.7*****************************9765 PP

>> PF00975.15  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   5.9e-09   1.3e-05      32     100 ..     142     209 ..     122     211 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.9e-09
                  ECCSTTC----TTTTHHHHHHHHHHHHHHHH--S-SEEEE------HHHHHHHHHHHHH.S--CEEEEEE CS
   PF00975.15  32 aiqlpgrerdepllesieelaeeyaealrqiqpegPyaLfGySlGGllAfevArqLerq.geevasLili 100
                   ++++   +++p++++++++++     l++  ++  +aL+G S+G++lA e A  L +q + +++sL l+
  MMETSP0890-20130614|31256_1 142 SVEYRLA-PEHPYPAGLQDVLAATRMMLLRFPQS-RFALAGVSAGACLALEAALDLNAQeSQRIHSLALF 209
                  4555555.67899*****9999988888887777.9***********************99999999986 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.3   1.1e-08   2.4e-05       2     191 ..     107     277 ..     106     296 .. 0.60

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.1e-08
                  EE------------H......HHHHHTTT..SEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHH....H----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHH CS
    PF12697.2   2 vllHGlggsaeswrp......laeaLaag..yrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaa....arrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvp 191
                  +  HG+g+ a++ +       + e+L +g  +r v+++++   +      + p  l+d +a+ + +l ++   ++ l G S G+ +al+aa    a++++++++l+l  p+++   s       ++ +  +++    + ++++++++        ++ +r              l+++l e++a+l  P+l+ +++aD++ +
  MMETSP0890-20130614|31256_1 107 IYAHGGGFVAGDAQCgtgldyFNELLKRGisFRWVSVEYRLAPEH-----PYPAGLQDVLAATRMMLLRFPQSRFALAGVSAGACLALEAAldlnAQESQRIHSLALFFPFLEPACS------TPFKKHGYRWNFGKWLQWCWKGYY--------NDTIRTKG--------V--LNRPL-EQFAAL-PPTLIATSKADPLRD 277
                  566777766644444444441444556753367788888843222.....24678************************************555555666******99999943332......244444444444333333333333........23333211........2..33443.444444.566666666666654 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.8e-08   6.5e-05       2     114 ..     106     275 ..     105     296 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.8e-08
    PF12695.2   2 vvlvhGaggdssay.....eplaealakrg..favvavdlpghgasegaaaakrvlaadll......dleriilvGhSlGGgvalelag....rd.drvkglvllapf..pd.gedlakltl.....................................pvllihGtrDgv 114
                  ++++hG+g  + +       +++++l krg  f+ v+v+++   +    a +++vl a+          +r +l+G S+G+ +ale+a     ++ +r+ +l l+ pf  p+ + +++k +                                      p+l+   ++D +
  MMETSP0890-20130614|31256_1 106 IIYAHGGGFVAGDAqcgtgLDYFNELLKRGisFRWVSVEYRLAPEHPYPAGLQDVL-AATRmmllrfPQSRFALAGVSAGACLALEAALdlnaQEsQRIHSLALFFPFlePAcSTPFKKHGYrwnfgkwlqwcwkgyyndtirtkgvlnrpleqfaalpPTLIATSKADPL 275
                  79999997754332122225788899999844666777666666665444444444.3222344445779****************99999985569**********9444433444444448888888888888888888888888999999999998888888888876 PP

>> PF10340.4  Protein of unknown function (DUF2424)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-06    0.0057      50     135 ..      31     116 ..      14     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.5e-06
    PF10340.4  50 aivkyvlnplldllsslllkfegssit.kyklpkedekslegeifdkkllnqdkikskfvwlrkvpetfdPkvDpvllylHGGgfal 135
                   i+  +++pl+  + + +   eg  +  +  ++ ++  +l+g   +k++  +++++   v+ ++ p + +   D +++y HGGgf+ 
  MMETSP0890-20130614|31256_1  31 DILTAMIIPLIMPFEASMTSKEGLEQFrAAIQKLSNADGLYGRQVSKNWNVEHIVEEAEVYIHT-PLKSKEPLDLIIIYAHGGGFVA 116
                  5556666666555555555556666652344445788889999999999999999999999998.9999999************975 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.1e-05     0.048       6     118 ..     104     209 ..     101     217 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
                  EEEE----TT-------THHHHHHHHHHH---EE-EEE...S------TSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE---B---HHHHHHHHH--S-HHHCTTEEEEEE- CS
   PF01083.17   6 vivifARgttepgglgsvgeavvsalesavgstsvavqgVnYpAdleqslyegsaaaGiadaarlvnsaaskCPntkivlgGYSqGaavmdnaiagkglsaavadkvkavvlf 118
                  +i+i+A g +  +g +++g+ +    e   ++ s   ++V+Y+   e+        aG +d+ +++  ++ + P+++++l G S Ga ++  a+    l+a+  +++ + +lf
  MMETSP0890-20130614|31256_1 104 LIIIYAHGGGFVAGDAQCGTGLDYFNELLKRGISFRWVSVEYRLAPEH-----PYPAGLQDVLAATRMMLLRFPQSRFALAGVSAGACLALEAALD--LNAQESQRIHSLALF 209
                  567777777777777666665555555444455555555778766655.....689***********************************99999..999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 1073.00
//
Query:       MMETSP0890-20130614|31260_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-07   29.5   0.1    9.3e-07   28.9   0.0    1.3  1  PF13692.1  Glycosyl transferases group 1
    1.5e-05   24.3   0.0      2e-05   24.0   0.0    1.2  1  PF00534.15 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.4e-10   9.3e-07      46     111 ..      12      80 ..       4      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.4e-10
    PF13692.1  46 elarl.lepnveflgfve..elaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpee 111
                  e++rl  ++++ ++g v+   la+++a+a+++l+p+ + e+ ++ l+ ++a+G   ++s+++++  pe+
  MMETSP0890-20130614|31260_1  12 EVHRLlDQDGIFYYGMVDhaTLAQAYANASFILYPTAYPETGCVTLMKAMAMGALPITSRYAYSVVPEL 80 
                  467777888********6448*******************889******************99988875 PP

>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.9e-09     2e-05      70     124 ..      17      74 ..       7     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.9e-09
                  --EEE-----HHH...HHHHHTTECEEEE--SS.B---HHHHHHHH----EEEE-..T CS
   PF00534.15  70 elsdnvifvgevpredleelyrnadifvlpsrs.EgfGivllEAmaaglpviasn..v 124
                    +d ++++g+v++  l + y na+++++p  + E  +++l+ Ama+g  +i+s   +
  MMETSP0890-20130614|31260_1  17 LDQDGIFYYGMVDHATLAQAYANASFILYPTAYpETGCVTLMKAMAMGALPITSRyaY 74 
                  5578899**********************************************98533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 600.93
//
Query:       MMETSP0890-20130614|31266_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       451  (0.0329871); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 652.92
//
Query:       MMETSP0890-20130614|31274_1  [L=1121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1054  (0.0770919); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.56u 0.34s 00:00:01.90 Elapsed: 00:00:01.12
# Mc/sec: 2377.27
//
Query:       MMETSP0890-20130614|31280_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 283.21
//
Query:       MMETSP0890-20130614|31306_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-25   86.7   0.8    2.5e-14   52.7   0.0    2.8  3  PF12738.2  twin BRCT domain
    6.2e-16   58.2   0.2    1.7e-06   27.9   0.0    3.5  3  PF00533.21 BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.4e-11   9.5e-08      11      53 ..       3      45 ..       1      59 [. 0.86
   2 !   52.7   0.0   3.6e-18   2.5e-14       1      63 []      83     148 ..      83     148 .. 0.97
   3 ?   -1.9   0.0       0.4   2.7e+03      33      40 ..     246     253 ..     236     255 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.4e-11
    PF12738.2 11 ddrkrlqkliralGasiskeltkkvTHLickraegeKyekAqk 53
                  +r+ +++l+  +G+++s ++  k+THL+++   + Ky++A +
  MMETSP0890-20130614|31306_1  3 RERDVIEELVQRMGGEVSSQFDAKTTHLVAATVLSAKYKAAMN 45
                 57999************************************76 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 3.6e-18
    PF12738.2   1 lvicvsgysgddrkrlqkliralGasiskel.tkkvTHLic..kraegeKyekAqkwgipvVspeW 63 
                  lv+ v++++++ ++++qk +++lGa +sk l  ++vTHLi+    ++geK+ +A +w ip+V ++W
  MMETSP0890-20130614|31306_1  83 LVVAVTNLDPTTKQNIQKRLEKLGAIYSKVLdQNTVTHLISsgGTPSGEKFVHALEWDIPIVDLRW 148
                  5789***************************999*******99999******************** PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.4
    PF12738.2  33 kkvTHLic 40 
                   ++TH+++
  MMETSP0890-20130614|31306_1 246 DTITHVVL 253
                  4789*996 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.5e-08    0.0001      20      63 ..       4      45 ..       2      49 .. 0.89
   2 !   27.9   0.0   2.4e-10   1.7e-06       3      77 ..      77     152 ..      75     153 .. 0.87
   3 !    4.2   0.0    0.0064        44      59      78 .]     265     284 ..     241     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHCT-EEESSGSSSCSEEEEECCBSHCHHHHHHHH CS
   PF00533.21 20 nreeleelikelGGkvstevskktthlvvgepelrtlkylaaia 63
                 +r+ +eel++++GG+vs++ + ktthlv+ +    + ky+aa +
  MMETSP0890-20130614|31306_1  4 ERDVIEELVQRMGGEVSSQFDAKTTHLVAATV--LSAKYKAAMN 45
                 68999***********************9999..7778887765 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 2.4e-10
                  TTTTTTCEEEESSTTSSHHHHHHHHHHHCT-EEESSG.SSSCSEEE..EECCBSHCHHHHHHHHTTCEEEETHHHHHH CS
   PF00533.21   3 pklFeglkfyigtfdnfnreeleelikelGGkvstev.skktthlv..vgepelrtlkylaaialnipivneeWlldc 77 
                   k+  gl++ ++ +d +++ ++++ +++lG+ +s+ +   ++thl+   g  + +++k+ +a+++ ipiv+  Wl  c
  MMETSP0890-20130614|31306_1  77 VKPCCGLVVAVTNLDPTTKQNIQKRLEKLGAIYSKVLdQNTVTHLIssGG--TPSGEKFVHALEWDIPIVDLRWLDTC 152
                  66777999999**********************99995667899995444..5699*******************988 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0064
                  HHHHHTTCEEEETHHHHHHH CS
   PF00533.21  59 laaialnipivneeWlldci 78 
                    ++ +  +iv+ +Wll+++
  MMETSP0890-20130614|31306_1 265 FDSLPRTAHIVTSDWLLESL 284
                  556667889********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.55s 00:00:00.94 Elapsed: 00:00:00.61
# Mc/sec: 1202.11
//
Query:       MMETSP0890-20130614|31311_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-14   52.5   0.0    2.6e-14   52.3   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.9e-18   2.6e-14     256     339 ..       2      84 ..       1      90 [. 0.90

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.9e-18
                  HHHHHHHTT----TTSEEEEEEEGGGHHHHHHHHHHHHHT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--E CS
   PF00171.17 256 aivkgaflnaGQvCiatsrllVhesiydefveklveaakklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGe 339
                  a+v++ ++ aGQ+C+a s  +   +  +e + +l++++++lkvGd+ d+++d+GP+is ++  r  ++i +a ++gak+ l+G+
  MMETSP0890-20130614|31311_1   2 ALVAASMGAAGQRCMALSVAVFVGN-SSEWIPELAQRCARLKVGDGADPNSDVGPMISPESKSRAVNLIGQALNKGAKIELDGR 84 
                  678999************8765554.47999***************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.47s 00:00:00.69 Elapsed: 00:00:00.91
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|31303_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-13   50.0   0.2    6.9e-13   48.6   0.1    1.8  1  PF06426.9  Serine acetyltransferase, N-terminal
    3.1e-12   45.2   7.8    2.5e-09   36.1   0.6    3.3  3  PF00132.19 Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.026   13.9   0.0    1.4  1  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF06426.9  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.1   1.5e-16   6.9e-13      25     105 .]       6      92 ..       1      92 [. 0.92

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.5e-16
                  HHTTT-SSHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHH-T......THHHHHHHHHHHHHHH-TT--STHHHHHH----HHHHH CS
    PF06426.9  25 atilshkslesalafllanklasselsaealrelfeealaadp......eiveaaraDlkavkerDpAcesyleplLyfKGFqAlqa 105
                  +++++ +s+e+ +a  +a++ a + +s + l + f++a+++ +      +++e++r D  av +rDpAc+s+le++LyfKGF A+ a
  MMETSP0890-20130614|31303_1   6 NEMMQVSSFEAFVAKSIATRFAGRGFSVSFLAKKFQNAFENAQikednwSLAECIRLDADAVAKRDPACDSILEVILYFKGFAAITA 92 
                  45778899****************9999999999999999988889999***********************************975 PP

>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12   5.5e+02      19      34 ..     120     129 ..     110     134 .. 0.61
   2 !   10.7   0.5   5.8e-05      0.26       1      23 [.     140     162 ..     140     163 .. 0.93
   3 !   36.1   0.6   5.4e-13   2.5e-09       1      35 [.     172     206 ..     172     207 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
                  SEBE-TTEEE-TTEEE CS
   PF00132.19  19 gviIGdnviIgagvvi 34 
                  gv       I+++++i
  MMETSP0890-20130614|31303_1 120 GVD------IHPCATI 129
                  444......5555554 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.8e-05
                  CEEE-TTEEE-TTEEEESSEBE- CS
   PF00132.19   1 gtvIGenvlIgpnvvigggviIG 23 
                  g+vIGe +++g +v+ +++v++G
  MMETSP0890-20130614|31303_1 140 GIVIGETAVVGYGVTMLHNVTLG 162
                  689******************99 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 5.4e-13
                  CEEE-TTEEE-TTEEEESSEBE-TTEEE-TTEEEE CS
   PF00132.19   1 gtvIGenvlIgpnvvigggviIGdnviIgagvvig 35 
                  +++IG+ vl+g+nv i+g++ IG++++Igag+v+ 
  MMETSP0890-20130614|31303_1 172 HPKIGQYVLLGANVSILGNISIGSGAKIGAGSVVL 206
                  689******************************95 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.8e-06     0.026      19      46 ..     281     308 ..     271     311 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.8e-06
    PF13833.1  19 lkglseeevdilfrefDtdgdGkisfeE 46 
                  ++g+  +++++lf  +D+d+dG +++ +
  MMETSP0890-20130614|31303_1 281 VHGVPQNQAQDLFFQLDQDQDGLVNETD 308
                  44477889*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.85
# Mc/sec: 986.74
//
Query:       MMETSP0890-20130614|31316_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 667.78
//
Query:       MMETSP0890-20130614|31314_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-97  323.7   0.1    3.5e-96  321.7   0.0    1.7  1  PF00316.15 Fructose-1-6-bisphosphatase
  ------ inclusion threshold ------
      0.072   12.8   0.0        0.2   11.4   0.0    1.7  1  PF10664.4  Cyanobacterial and plastid NDH-1 subunit M


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.7   0.0  5.2e-100   3.5e-96      18     321 ..       7     335 ..       2     339 .. 0.90

  Alignments for each domain:
  == domain 1    score: 321.7 bits;  conditional E-value: 5.2e-100
   PF00316.15  18 gelkevlsslaeaaktiaskirkaglaellglaga..tnvtGdeqkklDvladdilieaLkaseavkvlaSEEeeelvvl.............egekegkyavaiDPlDGSSnidtnvsvGTifsifrras..........edeastidvlrpGreqvAagyviYGpstalvltlgkGvneftlDldlgefilvkeevkipeegkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkgGiflypgdkkyekgkLRllyEaaPlaflieqagGkatdgkkriLdlvpkklhqrtpivlGskdeverveel 321
                  +el++++ss+++a kti++ +r++ l+  +g  ++  + ++  ++kklDv+++++l++aL+ ++++ vlaSEEe+++v +              ++++g+y+ ++DPlDGSSn+d+++  GTif+if+ ++            ++  ++ l+pG+ +vA+gy++Y ++t +++ +g+G++ ft+D+++gef+l++++v+ip+ gki+s+ne+n+ + d++ ++yid+l +++  ++ +y++Ryigs+V dvhr+ll+gG+f+yp+d+k+++gkLRllyEaaP++fl+eqagG at+g++ ++++vp+++hqr+pi+lGskd+v+++ + 
  MMETSP0890-20130614|31314_1   7 SELESIFSSIQTAGKTISNLVRRSTLTGNTGYLMKqvSMFKVKNKKKLDVITNNVLKNALRFTGRMGVLASEEEDAPVEIledltakydhdilLERTSGQYIAVFDPLDGSSNVDAGIPTGTIFGIFEDPNaecgvlpdgtMLDECLTATLQPGSSLVASGYILYSSATFFLFYVGAGTHLFTYDEHIGEFVLTNPDVQIPSRGKIYSVNEANKPYNDQPFQNYIDRLAKGTGRAQTQYTSRYIGSMVGDVHRTLLYGGVFAYPADQKNKSGKLRLLYEAAPMSFLVEQAGGLATTGRHPVMNIVPTNVHQRVPIILGSKDDVQEAIDE 335
                  6899***************************87651155678999*****************************98875433333333222222457899***************************98888899998765333434489*****************************************************************************************************************************************************************************997655 PP

>> PF10664.4  Cyanobacterial and plastid NDH-1 subunit M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.9e-05       0.2      51      93 ..     230     272 ..     214     278 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.9e-05
    PF10664.4  51 feelvesaageelsdynlrriGsdleefirkllqaGelsynle 93 
                  + + +++ +g+  ++y+ r iGs + ++ r+ll+ G  +y  +
  MMETSP0890-20130614|31314_1 230 YIDRLAKGTGRAQTQYTSRYIGSMVGDVHRTLLYGGVFAYPAD 272
                  333345668999************************9999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:01.04
# Mc/sec: 808.77
//
Query:       MMETSP0890-20130614|31329_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-18   66.6   0.0    2.5e-18   66.0   0.0    1.3  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.8e-22   2.5e-18      29     164 ..       2     132 ..       1     146 [. 0.92

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.8e-22
                  -EEEEES-----HCCCCCHHT-S-.EEEE----ECC-TTS-HHHHHCCCHHHCH-T-SEEEEE----SGGGGHHHHSHHHHHHEEE-EEEEEEETTTHCHHHHHHHHHHHHHCT-SEEEEE-CCCTTTT..HHHHH CS
   PF02492.14  29 kiaVivndfgetkiDaellretgveivelnnGciCctlredllmelealeelkeerldvlliEttGlaepapltfteeelksdlgldavvtvvdvknltegedkpekledqlaaAdlivlnKiDlldaeadlekle 164
                  k+aV++n+ g+++iD++ l++ gv++ e++ Gc Cc     +  +l +l++++  r++++l+E +G+ e + l  ++  +++ l l a++t++ ++  +   +k+  ++dql+aAd+++++  Dll+ + + +k+ 
  MMETSP0890-20130614|31329_1   2 KWAVLINESGDVGIDGTALSAMGVPVREIAGGCACCANGVVFRAALIQLVARE--RPSRVLVEPSGIGETTRL--KSMIIATGLSLGATITLIPADVHDALLEKSYYYQDQLRAADVFIITRSDLLQPS-NCKKMS 132
                  89***********************************9999999999999999..9*****************..7778889*************8889999************************988.336665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.84
# Mc/sec: 932.87
//
Query:       MMETSP0890-20130614|31363_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   19.4   0.0     0.0047   15.3   0.0    2.1  2  PF03254.8 Xyloglucan fucosyltransferase
  ------ inclusion threshold ------
      0.049   12.9   0.0      0.091   12.0   0.0    1.4  2  PF09700.5 CRISPR-associated protein (Cas_Cmr3)


Domain annotation for each model (and alignments):
>> PF03254.8  Xyloglucan fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.9e-07    0.0047     110     151 ..      28      70 ..      14      79 .. 0.78
   2 !    1.9   0.0    0.0081        55     236     302 ..     173     231 ..     140     264 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.9e-07
    PF03254.8 110 aseaeCkYvvw.ipleGlGnRilslasaFLyAlltdRvllvde 151
                  a+ ++ ++v     ++G+GnR+  +   F+ Allt+R l+++ 
  MMETSP0890-20130614|31363_1  28 AKGEDGRFVYAkADAHGIGNRVYCVIGGFVVALLTNRALIIEW 70 
                  5555566654314579************************985 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.0081
    PF03254.8 236 ekvpwlilksdsyfvpslflvpsfeeelsklfPeketvfhhlgrYLfhPsnkvWglvtryyeaylak 302
                  e  + l ++sd  f    +  ++ +   + +fP+  + +  + +YL++P+ ++ + v+    a+l +
  MMETSP0890-20130614|31363_1 173 ETATVLCIRSDRPF----YWAATCNPRTQYMFPDPWSTLGAFQQYLLRPTQSIRERVQ----AHLYR 231
                  55556666666543....555666777889********************99877664....33333 PP

>> PF09700.5  CRISPR-associated protein (Cas_Cmr3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.82   5.6e+03     294     320 ..     130     154 ..     128     157 .. 0.78
   2 ?   12.0   0.0   1.3e-05     0.091       8      61 ..     177     231 ..     175     278 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.82
    PF09700.5 294 gwdlaknkpkptrravpaGSVyfleak 320
                  g+d++++ p + +  + +GSV+ ++ +
  MMETSP0890-20130614|31363_1 130 GMDVETRCPGKGK--AHPGSVWVIRSN 154
                  7888888888888..999***977665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.3e-05
    PF09700.5   8 vlffRdgrpFeageear.aassifPsPstlaGalrtallekagldlgdlleeeek 61 
                  vl +R+ rpF  + + +   + +fP P+  +Ga    ll+ ++   +++++   +
  MMETSP0890-20130614|31363_1 177 VLCIRSDRPFYWAATCNpRTQYMFPDPWSTLGAFQQYLLRPTQSIRERVQAHLYR 231
                  6899*******666666699**********************9655666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.62
# Mc/sec: 1522.85
//
Query:       MMETSP0890-20130614|31394_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       573  (0.0419105); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.44s 00:00:00.98 Elapsed: 00:00:00.64
# Mc/sec: 906.12
//
Query:       MMETSP0890-20130614|31401_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 292.50
//
Query:       MMETSP0890-20130614|31409_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 1046.51
//
Query:       MMETSP0890-20130614|31430_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-22   77.7   9.3    1.2e-20   73.3   4.1    2.2  2  PF01169.14 Uncharacterized protein family UPF0016
  ------ inclusion threshold ------
       0.31   10.1   5.0       0.34   10.0   2.5    1.7  2  PF01810.13 LysE type translocator


Domain annotation for each model (and alignments):
>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0019        13      46      78 .]       1      38 [.       1      38 [. 0.82
   2 !   73.3   4.1   1.7e-24   1.2e-20       3      78 .]      83     156 ..      81     156 .. 0.97

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0019
   PF01169.14 46 vtllavllGkll.....akllperllklvaallFlafG 78
                 +t+l+v++G+++     ++   ++l ++va ++F++fG
  MMETSP0890-20130614|31430_1  1 MTILSVIIGQIFhsvpdSFTGGLPLDDYVAVASFFYFG 38
                 799*********66666556666799999999999998 PP

  == domain 2    score: 73.3 bits;  conditional E-value: 1.7e-24
   PF01169.14   3 tsflliflaElGDKTqlatllLAaryskkplaVflGatlAlllvtllavllGkllakllperllklvaallFlafG 78 
                  ++f+l++ aE+GD++q+at++L+a +  +p++V+lGa l++  +t++avl+G ll+k+l+e+ + ++a+ lFl+f+
  MMETSP0890-20130614|31430_1  83 QAFALTVAAEIGDRSQIATIALSAAQ--NPFLVTLGACLGHGFATGIAVLGGGLLSKYLTEKKISIIAGTLFLFFA 156
                  79**********************66..**********************************************97 PP

>> PF01810.13  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.17   1.2e+03      67      80 ..      31      44 ..      27      79 .. 0.70
   2 ?   10.0   2.5     5e-05      0.34      24      75 ..     108     157 ..      87     161 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.17
   PF01810.13 67 gayLlwlgvlalrs 80
                 +a  +++gv++l +
  MMETSP0890-20130614|31430_1 31 VASFFYFGVKSLVD 44
                 44445555555544 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 5e-05
   PF01810.13  24 khgllvalgcllgdavlillgllGlalLlkaspivlallrlgGgayLlwlgv 75 
                  ++ +lv lg++lg  +  ++++lG++lL+k +    ++  ++G ++L+ ++v
  MMETSP0890-20130614|31430_1 108 QNPFLVTLGACLGHGFATGIAVLGGGLLSK-YLTEKKISIIAGTLFLF-FAV 157
                  46899***********************98.66666666666666665.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 802.05
//
Query:       MMETSP0890-20130614|31437_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 902.98
//
Query:       MMETSP0890-20130614|31447_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-25   87.8   0.0    7.9e-25   87.3   0.0    1.2  1  PF00535.21 Glycosyl transferase family 2
    7.3e-13   48.7   0.1    8.3e-13   48.5   0.1    1.1  1  PF13641.1  Glycosyltransferase like family 2
    1.4e-05   24.1   0.0    1.8e-05   23.8   0.0    1.1  1  PF10111.4  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.078   12.7   0.0       0.15   11.8   0.0    1.4  1  PF00482.18 Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   2.3e-28   7.9e-25       1     115 [.      34     158 ..      34     164 .. 0.88

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 2.3e-28
                  EEEEEESS-TTTHHHHHHHHHT-....S---EEEEEEE-S--HHHHHHHGGGGG...E------HHHHHS-HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHH...HHHHHH.-T..T--EE CS
   PF00535.21   1 sviiptyNeekylletlesllnq....typnfeiivvDDgStDetveileeyak...sdprvrvirleknvGkagarnaglkkatgdyilflDaDdepdpdwlekl...veklekdgadvvigsr 115
                  s++ip+yNe+k+l+++l+ l+      ++  +eii+vDDgS D+t + ++  +      +rvrv rl kn+Gk+ga+ +g+++a+g+ il++DaD + +  +le+l   ++k+ ++++ +++gsr
  MMETSP0890-20130614|31447_1  34 SIVIPAYNESKRLPAMLDELAIYlqsrKGLSYEIIIVDDGSVDDTSKTAKIVSArffPTDRVRVARLRKNRGKGGAVREGASRARGQRILLVDADGATRITDLERLeqaLNKFSQHEPVIAFGSR 158
                  9*****************9998899*************************999999999************************************988776666651116666667776666666 PP

>> PF13641.1  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   2.4e-16   8.3e-13       1     112 [.      31     143 ..      30     173 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 2.4e-16
    PF13641.1   1 prvavvvptlneddvlarvlesilaldyapr....levivvvdgsdaetldvaeelaaay.pdvrvrvvvrprnpgptgkaralnealqaiksdlvlllDaDsvvdpdtlrrllpff 112
                  p++++v+p++ne ++l ++l++++ + + +r    +e+i+v+dgs ++t + a+  +a++ p+ rvrv +  +n+g   k++a+ e+  +++++ +ll+DaD       l+rl +++
  MMETSP0890-20130614|31447_1  31 PDFSIVIPAYNESKRLPAMLDELAIYLQ-SRkglsYEIIIVDDGSVDDTSKTAKIVSARFfPTDRVRVARLRKNRG---KGGAVREGASRARGQRILLVDADGATRITDLERLEQAL 143
                  679********************97654.333569***********999998887777752688999987777666...777777*****************665544455555544 PP

>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.1e-09   1.8e-05       1     120 [.      34     150 ..      34     164 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 5.1e-09
    PF10111.4   1 svIiPvrlseek.rdilerlqsilarlkefrsdeeveilvvdndssesfakelkkiiakngaikyishktekdlfspakaRNrgaeksesdvilflDvDllisedllekiikkvkelsknn 120
                  s++iP++++ ++ + +l++l   l+++k      + ei++vd++s +++ k  k + a ++ +  ++ +   +  + ++a  +ga+ ++++ il++D+D +     le + + +++ s+++
  MMETSP0890-20130614|31447_1  34 SIVIPAYNESKRlPAMLDELAIYLQSRKGL----SYEIIIVDDGSVDDTSKTAKIVSARFFPTDRVRVARLRKNRGKGGAVREGASRARGQRILLVDADGATRITDLERLEQALNKFSQHE 150
                  79****998766266778887777777775....**************866666666677777788888888889************************8765555555444444666665 PP

>> PF00482.18  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.3e-05      0.15      49      97 ..      18      67 ..       3      69 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.3e-05
                 HHH----TT.TS-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH CS
   PF00482.18 49 saalartps.efpdlvaaliaagesgGnlaevLerladyleerrelrkkl 97
                  +a+ +  s  +++ ++ +i a  ++ +l+ +L+ la yl+ r  l +++
  MMETSP0890-20130614|31447_1 18 REAWLQEYSaSYDPDFSIVIPAYNESKRLPAMLDELAIYLQSRKGLSYEI 67
                 567777777799*****************************998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.83
# Mc/sec: 502.37
//
Query:       MMETSP0890-20130614|31458_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   31.4   0.1    4.8e-07   30.0   0.0    1.7  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
      6e-06   26.3   0.0    8.6e-06   25.8   0.0    1.2  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    0.00019   20.8   0.1    0.00035   20.0   0.0    1.4  1  PF13661.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   4.7e+03      14      28 ..      24      38 ..      12      48 .. 0.75
   2 !   30.0   0.0   1.1e-10   4.8e-07       2     100 .]      54     156 ..      53     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1
    PF13640.1 14 pHvDnsesssrrltl 28
                 +H D+ +  ++ +t 
  MMETSP0890-20130614|31458_1 24 IHDDTAHAQRKLYTW 38
                 688888777776665 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.1e-10
    PF13640.1   2 qlnrygpggflspHvDnse.........sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpg.rlvlFks.......drslHrvtpvgaqgrrlaitgwft 100
                  +l ry+pg++l pH+D ++          ++  +t+l+yl+d +  ++GG + +            ++     pk+g  +++F+         r+ H+ +p    +++++  +w++
  MMETSP0890-20130614|31458_1  54 TLIRYEPGERLAPHFDANRdyaiedsdrGGQTLATCLIYLTDSN-FDNGGYTSFTSL------DLRLQ-----PKKGsACIFFPAaidgtpdQRLEHAGEPP-LYQTKWIARIWVH 156
                  6899*************99********99************888.455555555532......33444.....****8888888899999999999999999.8889999999975 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.9e-09   8.6e-06       3      98 ..      51     156 ..      49     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.9e-09
                  SEEEEEEEES--E-EEEEEEEESS............SCEEEEEEE......T--EEEEEE-EESCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   3 eqlrvnrYpppekglglgpHtDne............nriltillq......ddggglqfrkedkwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                  e l++ rY+   +g +l+pH D              ++++t l +      d+gg + f+    +++ +p++++  ++f      + +  +++ +H++ p   ++++++ ++++
  MMETSP0890-20130614|31458_1  51 EALTLIRYE---PGERLAPHFDANrdyaiedsdrggQTLATCLIYltdsnfDNGGYTSFTSL--DLRLQPKKGSACIFFPA---AIDGTPDQRLEHAGEPPLYQTKWIARIWVH 156
                  678999***...**************************************999999999977..57788888766666666...589************************998 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.7e-08   0.00035      14      61 ..      54     106 ..      43     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 7.7e-08
    PF13661.1  14 altratrgdffdpHiDadpsql......gkprflsallYLNedwdadfdGgtlf 61 
                   l+r+ +g+ ++pH Da+  +       g ++  ++l+YL+ d + d +G t f
  MMETSP0890-20130614|31458_1  54 TLIRYEPGERLAPHFDANRDYAiedsdrGGQTLATCLIYLT-DSNFDNGGYTSF 106
                  6899***************999*******************.888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.54
# Mc/sec: 856.48
//
Query:       MMETSP0890-20130614|31465_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-09   35.1   7.2    1.2e-08   34.3   5.0    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    2.1e-08   33.7   8.2    3.7e-08   32.9   5.7    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    4.4e-07   29.4   9.9      7e-07   28.7   6.3    1.8  2  PF13639.1  Ring finger domain
    2.9e-06   26.7   9.0    5.4e-06   25.8   6.2    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    0.00013   21.3   4.0    0.00031   20.0   2.7    1.6  1  PF14447.1  Prokaryotic RING finger family 4
     0.0062   15.9   2.4      0.018   14.4   1.6    1.8  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
  ------ inclusion threshold ------
      0.013   15.5   2.5      0.029   14.3   1.7    1.6  1  PF12678.2  RING-H2 zinc finger
       0.67    9.3   4.8        1.5    8.3   3.3    1.6  1  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   5.0   6.9e-12   1.2e-08       2      46 ..     497     541 ..     496     544 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 6.9e-12
    PF13920.1   2 kktCvvClereadvlllpCgHlclCeeCaerllk.rkkkCpiCrsp 46 
                  k tC vC +re++++l++C H+ +C eC +  ++ r++kCp C +p
  MMETSP0890-20130614|31465_1 497 KLTCLVCSDREKTTVLTRCFHV-FCRECIDLSISnRSRKCPACSKP 541
                  569*******************.*******99988********998 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   5.7   2.2e-11   3.7e-08       2      45 ..     497     539 ..     496     540 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 2.2e-11
    PF13923.1   2 rfsCpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  +++C +C ++ + + +lt+C H++C++Ci+  +++ ++kCP C 
  MMETSP0890-20130614|31465_1 497 KLTCLVCSDREKTT-VLTRCFHVFCRECIDLSISNRSRKCPACS 539
                  579**********9.57*************99999899*****7 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.4   4.1e+03       8      22 ..     111     128 ..     110     130 .. 0.73
   2 !   28.7   6.3   4.1e-10     7e-07       2      46 .]     499     541 ..     498     541 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.4
    PF13639.1   8 delse..geevvrlp.Cg 22 
                  d+++e  g+++ +lp C 
  MMETSP0890-20130614|31465_1 111 DDIKEekGDAPATLPlCE 128
                  556556689999999996 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 4.1e-10
    PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrs.snsCPlCrkp 46 
                  +C +C d     ++ v ++C Hvf++eC+d  +++ s++CP C kp
  MMETSP0890-20130614|31465_1 499 TCLVCSDRE---KTTVLTRCFHVFCRECIDLSISNrSRKCPACSKP 541
                  699999985...5777888************9977358*****886 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   6.2   3.2e-09   5.4e-06       1      41 []     500     538 ..     500     538 .. 0.98

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.2e-09
                  -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                  C +C +  k+++ l+ C H fC++Ci+  ++ ++++kCP C
  MMETSP0890-20130614|31465_1 500 CLVCSDREKTTV-LTRCFHVFCRECIDLSIS-NRSRKCPAC 538
                  99**********.******************.999****** PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.7   1.8e-07   0.00031       7      51 ..     497     544 ..     492     548 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.8e-07
    PF14447.1   7 eqpcllcgtvgtkrvllpCgHlvpdetFdle...rYsgCPfCgtrlet 51 
                  + +cl c+  +++ vl  C H+ ++e+ dl+   r   CP C +++  
  MMETSP0890-20130614|31465_1 497 KLTCLVCSDREKTTVLTRCFHVFCRECIDLSisnRSRKCPACSKPFGA 544
                  679**************************973334457*******976 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.6   1.1e-05     0.018      11      57 ..     498     536 ..     494     537 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
                  -B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHTTT--B--- CS
    PF13445.1  11 faCpiske.qsteqnpPvvLpCGhvisrealeklakggrsnkgrfkCP 57 
                  ++C ++ +  +t     v+ +C hv++re++    +    n+  +kCP
  MMETSP0890-20130614|31465_1 498 LTCLVCSDrEKT----TVLTRCFHVFCRECIDLSIS----NR-SRKCP 536
                  678888776666....66666**********97776....33.89999 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.7   1.7e-05     0.029      31      75 .]     498     539 ..     468     539 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.7e-05
    PF12678.2  31 elcpeckapgksdecpvawgeCgHaFHlhCiskWl.ktrktCPlcr 75 
                   +c+ c   +     + ++ +C H+F  +Ci   + +++++CP c+
  MMETSP0890-20130614|31465_1 498 LTCLVCSDRE----KTTVLTRCFHVFCRECIDLSIsNRSRKCPACS 539
                  4555554444....5556679**********987735666*****5 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.3   0.00086       1.5       4      57 .]     490     539 ..     487     539 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00086
                  XXXXXXXX-B-TTT-SB-SSEEEES----EEEHHHHHHHHTTT--B-------- CS
    PF11789.3   4 aveeerislkCpltlkpfkePvtskkCnHvFEkeaIlkmlkrkkkvkCPvaGCs 57 
                   ++  r++l+C +  +  k+    ++C HvF +e I   + ++++ kCP   Cs
  MMETSP0890-20130614|31465_1 490 IIKDLRAKLTCLVCSDREKT-TVLTRCFHVFCRECIDLSI-SNRSRKCPA--CS 539
                  55555666666554444443.34468**************.999*****9..75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1283  (0.0938414); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.37s 00:00:01.31 Elapsed: 00:00:01.04
# Mc/sec: 1276.52
//
Query:       MMETSP0890-20130614|31479_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-18   64.9   0.0    7.7e-18   64.5   0.0    1.2  1  PF03959.8  Serine hydrolase (FSH1)
    2.5e-08   33.9   0.6     0.0021   17.9   0.1    2.1  2  PF12697.2  Alpha/beta hydrolase family
    8.2e-05   22.2   0.0     0.0001   21.9   0.0    1.1  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.052   12.9   0.1        8.5    5.7   0.0    2.1  2  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   2.3e-21   7.7e-18      65     208 ..      27     176 ..       5     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 2.3e-21
    PF03959.8  65 eeeeeyraWfrkkde.....sneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea...khpklkfailvsGfkleepkyeeyy...eedkiqtpsLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfvPnkkey 208
                   ++ + ++W+  k        +ey+gl++sld +++   ++gpf+ + G SqGa++ a l++  +  +       +p+ kf++  ++   ++p  +++      d+    +Lh + + D v ++e ++++a  +k+ ++++ H+ggH+vP   + 
  MMETSP0890-20130614|31479_1  27 LNNHDEYQWWLLKPGersftASEYIGLDQSLDILREKTIAEGPFHSVWGHSQGAIFLAFLLARRDLFDS-VfgaLNPPSKFILNGAAW--PQPFDQDMTsiaLLDD-LPSTLHCFATDDPVNPSEHARRIASLCKE-ATTYIHDGGHYVPDDPKA 176
                  456677777776666699999************************************999987665443.346699999*98765554..3442223221122232.2458*************************.*************98665 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.2e-06    0.0074      65     131 ..      65     122 ..       7     132 .. 0.71
   2 !   17.9   0.1     6e-07    0.0021     176     226 ..     129     178 ..     110     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.2e-06
                  ...--EE.EE--------HHHHHH----.EEEEE.EE------STT---TTHHHHHHHHHH----....-- CS
    PF12697.2  65 l..rpvv.lvGHSlGgavalaaaarrpdlvrglv.lidppgplpasalrpagpsllrrllagraaalrdla 131
                  +  +p++ ++GHS+G++  ++++ar  dl++++  +++pp              ++ + +a+ ++  +d++
  MMETSP0890-20130614|31479_1  65 IaeGPFHsVWGHSQGAIFLAFLLAR-RDLFDSVFgALNPPS-------K-----FILNGAAWPQPFDQDMT 122
                  1458888799**********99986.579999987888888.......5.....55555666555555555 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 6e-07
                  -S-.EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS-...-HHHHH CS
    PF12697.2 176 dvP.vlviageaDrvvppeearrlaealpgarvvvlpgagHllfleapdeva 226
                  d+P +l + +++D+v p e+arr+a   + a++++++ +gH+++ + p+++a
  MMETSP0890-20130614|31479_1 129 DLPsTLHCFATDDPVNPSEHARRIASLCKEATTYIHD-GGHYVPDD-PKAIA 178
                  45549999************************99997.****9965.77766 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.9e-08    0.0001      48     141 ..      58     168 ..       4     169 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.9e-08
    PF12695.2  48 rvl.aadll..dleriilvGhSlGGgvalelagrddrvkglv.llap..........f..pdgedlakltl.....pvllihGtrDgvvppeeaeklakalpgdaelvviegasH 141
                  ++l ++     +     ++GhS+G+ + + l +r+d ++++  +l+p          +  p ++d++ + l      +l   +t+D v p e+a+++a+ ++++  ++ i++++H
  MMETSP0890-20130614|31479_1  58 DILrEK--TiaEGPFHSVWGHSQGAIFLAFLLARRDLFDSVFgALNPpskfilngaaWpqPFDQDMTSIALlddlpSTLHCFATDDPVNPSEHARRIASLCKEA--TTYIHDGGH 168
                  333333..2346667899*******98888888666666665466665565444445433447788888889999999********************999976..566777777 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0027       9.3      32      64 ..      55      89 ..      41     103 .. 0.87
   2 ?    5.7   0.0    0.0025       8.5     178     218 ..     133     172 ..      93     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0027
                 HHHHHHHHHSTSSS..EEEEE-B---HHHHHHHHH CS
   PF00561.15 32 rdleavldalglkk..ltlvGhSmGGmialayaae 64
                   l+++++++  +     ++GhS+G+ + + ++a+
  MMETSP0890-20130614|31479_1 55 QSLDILREKTIAEGpfHSVWGHSQGAIFLAFLLAR 89
                 5688889999999987789*******999998886 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0025
                  EEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHCSHHH CS
   PF00561.15 178 tlvisgtdDplvpykaseklaelipksqlvvidgpgHlafl 218
                  tl   +tdDp++p ++++++a l+  +     dg gH +  
  MMETSP0890-20130614|31479_1 133 TLHCFATDDPVNPSEHARRIASLCKEATTYIHDG-GHYVPD 172
                  667789*********************9999999.998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.72
# Mc/sec: 615.73
//
Query:       MMETSP0890-20130614|31487_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.85
# Mc/sec: 248.09
//
Query:       MMETSP0890-20130614|31482_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1390  (0.101668); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.42s 00:00:01.12 Elapsed: 00:00:01.50
# Mc/sec: 536.78
//
Query:       MMETSP0890-20130614|31486_1  [L=1230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-58  195.3   0.0    2.3e-37  128.4   0.0    2.7  2  PF00069.20 Protein kinase domain
    2.2e-22   79.3   0.0    3.5e-18   65.5   0.0    2.3  2  PF07714.12 Protein tyrosine kinase
    1.8e-07   31.0   0.0        0.2   11.6   0.0    4.3  3  PF13499.1  EF-hand domain pair
    2.1e-06   27.0   0.7       0.17   11.7   0.0    3.9  4  PF13405.1  EF-hand domain
    4.8e-05   22.2   0.0       0.63    9.3   0.0    3.7  4  PF00036.27 EF hand
    0.00017   20.6   1.2     0.0096   14.8   0.0    2.5  2  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00018   20.9   0.1        2.8    7.4   0.0    4.1  4  PF13833.1  EF-hand domain pair
     0.0039   16.8   0.3     0.0039   16.8   0.2    2.6  3  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   1.3e-40   2.3e-37       5     152 ..     504     655 ..     501     674 .. 0.90
   2 !   63.9   0.0   6.5e-21   1.1e-17     149     260 .]     814     920 ..     802     920 .. 0.93

  Alignments for each domain:
  == domain 1    score: 128.4 bits;  conditional E-value: 1.3e-40
                  EEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E...EE------EEECEES CS
   PF00069.20   5 eklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel...kiaDFGlakklekss 152
                  ++lG+Gs+G+V ++++  +++k+A+K+++ ++e s++ +++++ E++ ++kl+Hp+i+++++vf  ++++++++++++gg+l + + ++ +++e  +  +++q+l++++y+Hs g++HrDLKp+N L+ +++     k++DFGlak+++++ 
  MMETSP0890-20130614|31486_1 504 SILGRGSYGVVRECRRILDNQKFACKTIEFPREISDAVIERIHaEIAAMRKLDHPHICRVHDVFFANRKVHMIIDLCQGGELWQRVVNRSQMNEALAAVLCKQMLSAVRYMHSSGVCHRDLKPQNWLFVNRDPDaplKLVDFGLAKHFSQRP 655
                  689*****************************999999988889*********************************************************************************999854433588*********984443 PP

  == domain 2    score: 63.9 bits;  conditional E-value: 6.5e-21
                  CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 149 eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                    +++ l+++vg+ +++APEvl+    +++++D+WslGvi+y ll+g +pf g+   +++ +++++ + +l ++ +  s+ s++++ ++++ll+++ ++R+tae++l+++w+
  MMETSP0890-20130614|31486_1 814 ALKRRYLSDRVGSFYFVAPEVLR--GAHDARCDLWSLGVIVYMLLSGVPPFGGR---TDRDILARVARAQLTFPARLFSNVSPQARLFVSRLLDRNVDRRITAEQALEESWI 920
                  567788999**************..899**************************...889999999999999**99999******************************997 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0     2e-21   3.5e-18       5     154 ..     504     652 ..     501     668 .. 0.89
   2 !   11.2   0.0   7.3e-05      0.13     167     222 ..     825     878 ..     801     916 .. 0.77

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 2e-21
                  EEE-------EEEEEEETTTTSSEEEEEEEEE..CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET...TTEEEE-----CEEST CS
   PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtl..kesaeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee...ekvvkisDfGLardie 154
                  + lG+G++G V e++       +++k a Kt+   ++ ++   e++  e+++m+kl+hp+i +++ v+  ++++ +++++++gG+L + + ++  ++++ +    ++ q+ ++++y++s  + HrdL  +N L  +   +   k+ DfGLa++  
  MMETSP0890-20130614|31486_1 504 SILGRGSYGVVRECRRI----LDNQKFACKTIefPREISDAVIERIHAEIAAMRKLDHPHICRVHDVFFANRKVHMIIDLCQGGELWQRVVNR--SQMNEALAAVLCKQMLSAVRYMHSSGVCHRDLKPQNWLFVNrdpDAPLKLVDFGLAKHFS 652
                  679***********999....7788999999944456777779*********************************************99997..88889999999*************************99876555669*********9874 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 7.3e-05
                  ECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT- CS
   PF07714.12 167 lpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegk 222
                   ++ ++apE+l+      + D Ws Gv+++ +++ g  p+ g +++++l+++ + +
  MMETSP0890-20130614|31486_1 825 GSFYFVAPEVLRG-AHDARCDLWSLGVIVYMLLS-GVPPFGGRTDRDILARVARAQ 878
                  556789***9875.57999***********9999.88**********999996543 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.002       3.4      35      65 ..     972    1002 ..     899    1003 .. 0.79
   2 !    6.2   0.0     0.006        10      41      65 ..    1056    1081 ..    1022    1082 .. 0.82
   3 !   11.6   0.0   0.00012       0.2       2      25 ..    1094    1117 ..    1093    1123 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.002
    PF13499.1   35 deevrevldyifkelDkngdGvlsfeEflqa 65  
                   + ++ e+++  ++ +D + dG+ls++ f  a
  MMETSP0890-20130614|31486_1  972 PAQSLEQVRVHLAVFDADADGTLSLSQFFDA 1002
                   78899999*******************9876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.006
    PF13499.1   41 vldyifkelDkngdG.vlsfeEflqa 65  
                   ++ ++f+  D   dG ++sf Ef++a
  MMETSP0890-20130614|31486_1 1056 EAAALFDATDIKADGqCISFREFAAA 1081
                   6778999****************987 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00012
    PF13499.1    2 lkeaFkllDkdgdgyldkeeLlrl 25  
                   l+++F +lD +g gyl+++ L+++
  MMETSP0890-20130614|31486_1 1094 LQDVFATLDANGRGYLTPATLRNF 1117
                   7899*****************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         8   1.4e+04       7      20 ..     899     912 ..     899     913 .. 0.86
   2 !   10.0   0.1   0.00035      0.61       8      27 ..     985    1004 ..     983    1008 .. 0.91
   3 ?   -0.3   0.0      0.69   1.2e+03       4      25 ..    1059    1081 ..    1056    1083 .. 0.83
   4 !   11.7   0.0   9.8e-05      0.17       2      26 ..    1094    1118 ..    1093    1123 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 8
                  GCC-------B--- CS
    PF13405.1   7 klfDkdgdGkidae 20 
                  +l+D++ d +i+ae
  MMETSP0890-20130614|31486_1 899 RLLDRNVDRRITAE 912
                  68999999999998 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00035
                   CC-------B---HHHHHHH CS
    PF13405.1    8 lfDkdgdGkidaeELrdaLr 27  
                    fD d dG+++++++ daL 
  MMETSP0890-20130614|31486_1  985 VFDADADGTLSLSQFFDALG 1004
                   59****************97 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.69
                   ---GCC------.-B---HHHHH CS
    PF13405.1    4 eaFklfDkdgdG.kidaeELrda 25  
                   ++F++ D   dG +i++ E+ +a
  MMETSP0890-20130614|31486_1 1059 ALFDATDIKADGqCISFREFAAA 1081
                   5788888889999******9875 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 9.8e-05
                   HH---GCC-------B---HHHHHH CS
    PF13405.1    2 lreaFklfDkdgdGkidaeELrdaL 26  
                   l+++F  +D +g G+++ + Lr++ 
  MMETSP0890-20130614|31486_1 1094 LQDVFATLDANGRGYLTPATLRNFV 1118
                   789****************999876 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.1   5.3e+03       7      20 ..     899     912 ..     899     913 .. 0.85
   2 !    9.3   0.0   0.00037      0.63       7      26 ..     984    1003 ..     980    1005 .. 0.91
   3 ?   -1.9   0.0       1.5   2.5e+03      17      25 ..    1073    1081 ..    1057    1084 .. 0.76
   4 !    8.1   0.0    0.0009       1.5       2      25 ..    1094    1117 ..    1093    1120 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.1
                  HHHCTTTSSEBEHH CS
   PF00036.27   7 kefDkDgdGkIsfe 20 
                  +++D++ d +I+ e
  MMETSP0890-20130614|31486_1 899 RLLDRNVDRRITAE 912
                  579*****999987 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00037
                   HHHCTTTSSEBEHHHHHHHH CS
   PF00036.27    7 kefDkDgdGkIsfeEfkeal 26  
                   ++fD D dG++s++ f +al
  MMETSP0890-20130614|31486_1  984 AVFDADADGTLSLSQFFDAL 1003
                   57**************9987 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.5
                   BEHHHHHHH CS
   PF00036.27   17 IsfeEfkea 25  
                   Isf Ef +a
  MMETSP0890-20130614|31486_1 1073 ISFREFAAA 1081
                   888888765 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0009
                   HHHHHHHHCTTTSSEBEHHHHHHH CS
   PF00036.27    2 lkeaFkefDkDgdGkIsfeEfkea 25  
                   l+++F+ +D +g G+++   ++++
  MMETSP0890-20130614|31486_1 1094 LQDVFATLDANGRGYLTPATLRNF 1117
                   899**************9887776 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4     0.017        29     114     169 ..     532     583 ..     522     592 .. 0.83
   2 !   14.8   0.0   5.6e-06    0.0096     114     168 ..     594     648 ..     585     673 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.017
    PF06293.9 114 elaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldkar 169
                  e++ e+++a++e++ ++ia+m++    H  + +h +++ +++     ++iDl ++ 
  MMETSP0890-20130614|31486_1 532 EFPREISDAVIERIHAEIAAMRKLDHPHI-CRVHDVFFANRK---VHMIIDLCQGG 583
                  4788999********************97.689999999998...78889986665 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.6e-06
    PF06293.9 114 elaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliDldka 168
                  +++e+l   l ++  ++++ mh+ gv+H+dl ++n l+ +++ +a + l+D+  a
  MMETSP0890-20130614|31486_1 594 QMNEALAAVLCKQMLSAVRYMHSSGVCHRDLKPQNWLFVNRDPDAPLKLVDFGLA 648
                  4778888888999999*********************999999999999999655 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   2.4e+03       7      33 ..     230     259 ..     225     261 .. 0.69
   2 !    7.4   0.0    0.0017       2.8      23      50 ..     975    1002 ..     960    1003 .. 0.85
   3 ?    4.4   0.0     0.014        25      22      51 ..    1052    1082 ..    1044    1085 .. 0.85
   4 !    6.3   0.0    0.0037       6.4       2      43 ..    1070    1110 ..    1069    1111 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.4
    PF13833.1   7 reeLkralallglkg...lseeevdilfre 33 
                  + +Lkra++ ++l      se e++ +f++
  MMETSP0890-20130614|31486_1 230 ASSLKRASSEQRLAVkesRSETELQNIFSH 259
                  678889885554443556889999999875 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0017
    PF13833.1   23 seeevdilfrefDtdgdGkisfeEFcvl 50  
                   s e+v++ + +fD+d dG +s+  F ++
  MMETSP0890-20130614|31486_1  975 SLEQVRVHLAVFDADADGTLSLSQFFDA 1002
                   778999999************9988765 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.014
    PF13833.1   22 lseeevdilfrefDtdgdGk.isfeEFcvll 51  
                   +s ee+ +lf++ D++ dG  isf EF ++ 
  MMETSP0890-20130614|31486_1 1052 ISIEEAAALFDATDIKADGQcISFREFAAAT 1082
                   66799**************889999999865 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0037
    PF13833.1    2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkis 43  
                   +++I++ e+  a a+  +  +++  ++++f  +D++g G+++
  MMETSP0890-20130614|31486_1 1070 GQCISFREFAAATAAYQIV-FTPAMLQDVFATLDANGRGYLT 1110
                   6788888888877665555.********************96 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.8       3.9   6.7e+03      90     154 ..     298     358 ..     287     379 .. 0.50
   2 !   16.8   0.2   2.3e-06    0.0039      90     196 ..     537     649 ..     521     650 .. 0.68
   3 ?   -1.6   0.1      0.94   1.6e+03      52     108 ..     829     884 ..     798     943 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 3.9
                  HHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHH CS
   PF01636.18  90 qlpallealaellaalhqadpaadpladflapyltllrllesataalvasellelleeleervla 154
                  q+ al+ a+ +  a+  ++  a    +d++ ++  ++  + +a   + a++l++++ +l + ++a
  MMETSP0890-20130614|31486_1 298 QINALVCAARAEIANGDAM--ARAKDQDRASRTYRCALTRIEA--LRSAANLDDRRDALLSKAAA 358
                  5555444444444433333..4444444444444444444444..45555555545555544443 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 2.3e-06
                  HHHHHHHHHHHHHHHHHHS-.-TTSHGGHCTBCTHHHHHHHHHHHH.HHHHHCTHH..HHHHHHHHHHHHHHHHHHC....SS--EEB-SS-SGGGEEEE...TTTTEEEE---TT-B CS
   PF01636.18  90 qlpallealaellaalhqad.paadpladflapyltllrllesata.alvaselle..lleeleervlaalaallpg....aeppvllHgDlhpgNllvd...pddgrvgviDfedag 196
                    +a++e++++  aa+  +d p  +++ d      +  r+++   + ++   ++++   + ++ e+++a l +++++      + +++H+Dl+p+N+l+    p d ++ ++Df++a 
  MMETSP0890-20130614|31486_1 537 ISDAVIERIHAEIAAMRKLDhPHICRVHDVF----FANRKVHMIIDlCQGGELWQRvvNRSQMNEALAAVLCKQMLSavryMHSSGVCHRDLKPQNWLFVnrdP-DAPLKLVDFGLAK 649
                  5566666777777777777644444444443....33333333333355555555556677888888888888888888888999**************99743.34446****9985 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.94
                  SB--BEEE..E-CSSCSC.....EEEEEE---HHBCCTCSHHHHHHHHHHHHHHHHHHHHHS CS
   PF01636.18  52 ipvPevlagdtdddvlgl.....lfalleyvpgevlerklnarqlpallealaellaalhqa 108
                  + +Pevl g +d+  +++     ++ ll++vp+   +       ++++l+++a+++  + + 
  MMETSP0890-20130614|31486_1 829 FVAPEVLRGAHDARCDLWslgviVYMLLSGVPPFGGRT------DRDILARVARAQLTFPAR 884
                  36888888777777777777666666666655555554......677777777776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       885  (0.0647308); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.69u 0.38s 00:00:02.06 Elapsed: 00:00:01.64
# Mc/sec: 1797.27
//
Query:       MMETSP0890-20130614|31490_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-07   29.5   0.1    1.3e-06   28.5   0.1    1.5  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.031   14.2   0.1      0.051   13.5   0.1    1.3  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
       0.06   12.6   0.1         12    5.2   0.0    2.3  2  PF10728.4  Domain of unknown function (DUF2520)


Domain annotation for each model (and alignments):
>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   2.9e-10   1.3e-06      24      95 ..      15      86 ..       2      87 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.9e-10
   PF03807.12 24 qkheviiaasrspekaeelaeelg...vkvtavsneeaaeeadvvilavkpedveevlaelkealkgklvisvla 95
                  ++++i++  r++ek ++l  e+g   v++ + +n+ ++++a+v+++av   ++++vl+el +   ++ +is +a
  MMETSP0890-20130614|31490_1 15 HPKRIILS-PRNAEKSAQLLHEFGaekVEIAQ-NNQAVLDAAEVILIAVLVPQADSVLSEL-RFESRHHIISLMA 86
                 78889966.9**************98888777.8999999*********************.7778888899887 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.1e-05     0.051      35     108 ..      15      96 ..      12     104 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
                  T-E.EEE----HHHHHHHHHHH...T-EE---S-HHHHHHT-SEEEE-S--SS-..SB-GGG-----............EEEE- CS
   PF01488.15  35 gvkkiviaNRtaekakeLaeelggeevealpleeleellaeadvvisatsapep..iiekeaveeakkk........lgllvDi 108
                  ++k+i++  R+aek ++L++e+g+e+ve+ + +++   l  a+v++ a+ +p+   ++++ ++e+ ++         l+llv++
  MMETSP0890-20130614|31490_1  15 HPKRIILSPRNAEKSAQLLHEFGAEKVEIAQNNQAV--LDAAEVILIAVLVPQAdsVLSELRFESRHHIislmaavsLSLLVEL 96 
                  67999*****************99988888887777..9999999999998887776666666655543444444444455555 PP

>> PF10728.4  Domain of unknown function (DUF2520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0028        13      14      69 ..      27      79 ..      19     103 .. 0.79
   2 ?    5.2   0.0    0.0027        12      40      90 ..     151     201 ..     119     205 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0028
    PF10728.4 14 aileslveelggevvevaeeqRalYHaaavlasNflvtllalavelleeagieeee 69
                 +   +l +e+g+e ve+a+++ a + aa v+   ++  l+ +a ++l e+ +e+  
  MMETSP0890-20130614|31490_1 27 EKSAQLLHEFGAEKVEIAQNNQAVLDAAEVI---LIAVLVPQADSVLSELRFESRH 79
                 5567899***********************7...5788888999999999888855 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0027
    PF10728.4  40 aaavlasNflvtllalavelleeagieeeealrallpLiratlenalergp 90 
                  + +++  + l +  ++a + l e g+++++a + ++ L+r+ l+ + +++p
  MMETSP0890-20130614|31490_1 151 LVMTFLMGDLYQRQKTALDWLIESGVDADTAASYVGGLFRSMLDDTANAKP 201
                  45667777777788999**************************99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 750.67
//
Query:       MMETSP0890-20130614|31489_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-09   34.3  24.3    9.5e-09   34.3  16.8    1.8  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3  16.8     7e-13   9.5e-09     113     353 ..      58     297 ..      56     298 .. 0.73
   2 ?   -0.0   0.0     0.019   2.6e+02     151     230 ..     330     347 ..     318     368 .. 0.60

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 7e-13
   PF07690.11 113 dwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaeel.rkepaplvp...awklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGf.glglvfptllalasdlappeerGtasglfntagslggalg 353
                  +++ +++ g  ++l+ +   lG+i+g + +++ a+ lg r + +ila+ ++l+++ +l  +p+++p+++   +a    + ++a l++   +++ll+      +ll+a++l +++ sg+++l+  +l++ +g++  +++++++l+ l l+++ +  l g+ +   ++  +  +++++++l ++gl+ +++      ++++l+ i   ++  + p l al++  +p+  +G+++g+ +++++++ ++g
  MMETSP0890-20130614|31489_1  58 HVVEERRVGALFSLAWMIGLLGSIFGVIGASAAATKLGIRITIIILAGCYVLLFLRILYAMPETAPDNSEAVHASGIiGIVTAVLAEqalGIQLLFDTTRRRMLLLASFLEHAAASGAISLISYWLVFKFGFG-IYMQSAVFLATLILVALSVLGLQGFAIELSQSSEQACAIIIIFSLPLFGLLAFSVK-----YWMALIGIPAtAAIAILPELRALLTADLPKADQGFVQGALTSLNAVADIVG 297
                  56788999*********************************************99434666666666666666666564444444446665666666664448******************************.55555555555555555554444444444333444444444444444444444444.....55566666664555569****************************998887 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.019
   PF07690.11 151 WravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsglltll 230
                  W+a+ +i  i+++++                                                              ++l
  MMETSP0890-20130614|31489_1 330 WHAILFIQLIVAFIL--------------------------------------------------------------FYL 347
                  444444444444444..............................................................222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.98
# Mc/sec: 992.78
//
Query:       MMETSP0890-20130614|31501_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00038   19.6  30.3     0.0082   15.5   0.2    5.9  6  PF02809.15 Ubiquitin interaction motif
    0.00053   19.9   2.2       0.11   12.5   0.2    2.4  2  PF11941.3  Domain of unknown function (DUF3459)
  ------ inclusion threshold ------
        0.1   12.4   0.9        1.3    8.9   0.1    2.4  2  PF14230.1  Domain of unknown function (DUF4333)


Domain annotation for each model (and alignments):
>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.39   1.8e+03       3       6 ..      61      64 ..      59      79 .. 0.72
   2 !    9.3   1.4   0.00017      0.78       2      18 .]      86     102 ..      85     102 .. 0.93
   3 !   15.5   0.2   1.8e-06    0.0082       3      17 ..     116     130 ..     114     131 .. 0.94
   4 !    7.2   0.1   0.00083       3.8       5      16 ..     135     146 ..     134     148 .. 0.91
   5 !    7.5   0.2   0.00065         3       2      16 ..     194     208 ..     193     210 .. 0.93
   6 ?   -4.6   0.6         3   1.4e+04       2       5 ..     217     220 ..     217     221 .. 0.56

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.39
                 CHHH CS
   PF02809.15  3 EEed 6 
                 EE+d
  MMETSP0890-20130614|31501_1 61 EEDD 64
                 5544 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00017
                  CCHHHHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSleea 18 
                  sEEe Lq  L+lS e+a
  MMETSP0890-20130614|31501_1  86 SEEEALQSVLELSKETA 102
                  8*************986 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 1.8e-06
                  CHHHHHHHHHHHHHH CS
   PF02809.15   3 EEedLqlALalSlee 17 
                  +E+ L+lA++lS +e
  MMETSP0890-20130614|31501_1 116 DEDALALAIELSKQE 130
                  8*************9 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.00083
                  HHHHHHHHHHHH CS
   PF02809.15   5 edLqlALalSle 16 
                  edL++AL  Sle
  MMETSP0890-20130614|31501_1 135 EDLKRALDASLE 146
                  9**********9 PP

  == domain 5    score: 7.5 bits;  conditional E-value: 0.00065
                  CCHHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSle 16 
                  ++Ee+L lAL lS +
  MMETSP0890-20130614|31501_1 194 DDEEELTLALHLSEQ 208
                  89***********98 PP

  == domain 6    score: -4.6 bits;  conditional E-value: 3
                  CCHH CS
   PF02809.15   2 sEEe 5  
                  +EEe
  MMETSP0890-20130614|31501_1 217 DEEE 220
                  5665 PP

>> PF11941.3  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   2.4e-05      0.11      13      72 ..      89     146 ..      81     158 .. 0.86
   2 !    7.0   0.1    0.0012       5.6      14      71 ..     162     220 ..     157     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-05
                  HHHTT--S----EEEE----EEEEE--.----EEEEEE-SSS-B---.-----EEEEES- CS
    PF11941.3  13 PaLadarrgglevavlgpkallvrwrlgdgallrlllNLgdepvalpdgaagrllfssea 72 
                   aL++    + e+a++ +k+l + +r gd+  l l++ L++++ +++ +   r+l++s +
  MMETSP0890-20130614|31501_1  89 EALQSVLELSKETARIREKELEAARR-GDEDALALAIELSKQETDVN-EDLKRALDASLE 146
                  678888888889999***********.699999*************9.777777777755 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0012
                  HHTT--S----EEEE----EEEEE--.......----EEEEEE-SSS-B---.-----EEEEES CS
    PF11941.3  14 aLadarrgglevavlgpkallvrwrl......gdgallrlllNLgdepvalpdgaagrllfsse 71 
                  aL++ r +++++  l p +ll ++        +d+++l+l+l L+++  +l      r+l+++e
  MMETSP0890-20130614|31501_1 162 ALRRSRLDSFKTGLLTPSTLLQHRGIlddvhhDDEEELTLALHLSEQVESLE-----RVLDEEE 220
                  899999999999999999998888888999877888**********887777.....4444443 PP

>> PF14230.1  Domain of unknown function (DUF4333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.064   2.9e+02      26      51 ..     130     157 ..     120     160 .. 0.66
   2 ?    8.9   0.1   0.00028       1.3      10      42 ..     206     238 ..     199     252 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.064
    PF14230.1  26 ekgvaqvLtssygl..kdvsVsCPedle 51 
                  e++v + L+++ ++  +++s++C+++++
  MMETSP0890-20130614|31501_1 130 ETDVNEDLKRALDAslEQTSINCDQEVK 157
                  6777777775544400456699998765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00028
    PF14230.1  10 svsggsskkeldkaevekgvaqvLtssyglkdv 42 
                  s +  s + +ld++ev+++++  L++++++++ 
  MMETSP0890-20130614|31501_1 206 SEQVESLERVLDEEEVQEEIKFALQEEVKQQEA 238
                  4444556679****************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1182  (0.0864541); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.62
# Mc/sec: 1001.06
//
Query:       MMETSP0890-20130614|31502_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.25   11.3   0.0    1.7  1  PF11396.3 Protein of unknown function (DUF2874)


Domain annotation for each model (and alignments):
>> PF11396.3  Protein of unknown function (DUF2874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05      0.25       2      29 ..     234     260 ..     233     266 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
    PF11396.3   2 PaaVknaikks.Ypgakiveiekeekkgg 29 
                  P ++ n+++++ +p+++i e++ ++   +
  MMETSP0890-20130614|31502_1 234 PGVINNTLTAEkFPSWTISEWDLKD--LQ 260
                  678899999999**********998..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.78
# Mc/sec: 980.05
//
Query:       MMETSP0890-20130614|31513_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:00.77
# Mc/sec: 177.39
//
Query:       MMETSP0890-20130614|31523_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   33.3   0.1    0.00021   20.9   0.0    2.1  2  PF00400.27 WD domain, G-beta repeat
     0.0066   15.9   0.0      0.095   12.2   0.0    2.2  2  PF07676.7  WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
       0.12   11.5   0.0       0.14   11.4   0.0    1.2  1  PF08450.7  SMP-30/Gluconolaconase/LRE-like region


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   6.4e-05      0.29      20      39 .]       2      20 ..       1      20 [. 0.96
   2 !   20.9   0.0   4.6e-08   0.00021      15      39 .]      35      59 ..      24      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.4e-05
                 ESSSTEEEEEETTSEEEEEE CS
   PF00400.27 20 spdgpllasgSrDgtirlWd 39
                 sp+g+++++gS  g  r+W+
  MMETSP0890-20130614|31523_1  2 SPNGTRVVTGSL-GIARVWN 20
                 89**********.******7 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4.6e-08
                 EEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27 15 tcvafspdgpllasgSrDgtirlWd 39
                 + +afspdg++++++  D++ r+++
  MMETSP0890-20130614|31523_1 35 NGCAFSPDGRRIITADLDKKARVFS 59
                 78*********************86 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.048   2.2e+02      17      24 ..       2       9 ..       1       9 [. 0.88
   2 !   12.2   0.0   2.1e-05     0.095      13      24 ..      36      47 ..      30      47 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.048
                 -----EEE CS
    PF07676.7 17 SPDGkkiv 24
                 SP+G++ v
  MMETSP0890-20130614|31523_1  2 SPNGTRVV 9 
                 9***9976 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.1e-05
                 EEEE-----EEE CS
    PF07676.7 13 ePawSPDGkkiv 24
                 + a+SPDG++i+
  MMETSP0890-20130614|31523_1 36 GCAFSPDGRRII 47
                 579*******96 PP

>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     3e-05      0.14     130     152 ..      28      50 ..       3      59 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3e-05
    PF08450.7 130 lddltisNGiawspdgktlYlaD 152
                  ld    +NG a+spdg+ +++aD
  MMETSP0890-20130614|31523_1  28 LDIEGHPNGCAFSPDGRRIITAD 50 
                  45556799999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 197.54
//
Query:       MMETSP0890-20130614|31538_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-47  158.8   0.0    1.1e-46  158.5   0.0    1.1  1  PF00117.23 Glutamine amidotransferase class-I
    2.4e-06   27.0   0.0    3.7e-05   23.1   0.0    2.5  2  PF07722.8  Peptidase C26


Domain annotation for each model (and alignments):
>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.0   1.7e-50   1.1e-46      21     190 ..       4     253 ..       1     255 [. 0.85

  Alignments for each domain:
  == domain 1    score: 158.5 bits;  conditional E-value: 1.7e-50
                  T-EEEEEETTGGHHHH.......................HH.T..TT--SEEEEE----TTTT-CCHHHHHHHHGTTTS-EE------HHHHHH-TT.................................EEE...TTC.CSEEEEEEEEEETTT.............SCCCTTT.TSEEEEEE-ESEEECSG...HHHHTTEEEEEEESSS-EEEEEEECSS...S.BEEESSBTTCTTS-GGGHHHHHHHH CS
   PF00117.23  21 gvkvevvpndadaeei.......................le.k..lsnpdgilisgGpgspgevegkieaikearenkiPiLGICLGmQllaiefgg.................................kvi...kekkeehmggnmrlghdgk.............aallygl.pnevivrhrHsyevnek...ellpeglevtaksedggeimaivekkn...p.ivgvQFHPEssstpggpellfnfll 190
                  g+ +++ +++++++e+                       ++ +  l++++g++++gG+gs+g +eg+i+++k +r++++P+LGICLGmQl++ief++                                   +   +e+++ hmgg+mrlg++++             aa++yg+ +++v++rhrH+yevn++   +l+++gl +++k+e g ++m+i+e++    p ++gvQ+HPE+ s+p++p+++f +l+
  MMETSP0890-20130614|31538_1   4 GCALDIAWIESSDLEPptqaqneldrenqndtetrsqsrKHaWdlLEKAHGVVVPGGFGSRG-IEGMIACAKFCRTRRKPYLGICLGMQLAVIEFARaflpspssgksytsaefdddynqakdsivkphhA-VvfmPEIDKHHMGGTMRLGARDTllvsqspkdepslAAIIYGQdKDRVTERHRHRYEVNPQlvpQLENAGLRFIGKDESG-SRMEIIELPRsvhPyFFGVQYHPEFLSRPQKPSPPFFGLI 253
                  66666666666666666666666666666666667777633534599***************.**********************************9999999998888888888888777766655543.1689****************999*************77777752678*************9****************888.8******99888899********************98876 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.11   7.8e+02      48      67 ..      41      60 ..      31      62 .. 0.84
   2 !   23.1   0.0   5.5e-09   3.7e-05      98     217 .]      72     237 ..      64     237 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.11
                 -HHHHHHHHHH----B---- CS
    PF07722.8 48 deedlealldlvdgllltGg 67
                 + +++ +ll++ +g++++Gg
  MMETSP0890-20130614|31538_1 41 SRKHAWDLLEKAHGVVVPGG 60
                 5667778999999***9999 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 5.5e-09
                  HHHHH------BB------HHHHHHH------EEE.....................EEEEEEE--E............................T-STTTTS-HHHS--EEEEEEEE-BH........HHHH-EEEEEEE.----EEEEEEE--.S-B----S-TT CS
    PF07722.8  98 LiraalergvPvlgiCrGlqllnvalggtlyqdikeepglsdhrehe...q.....dasshavsle............................kgsllarllgaeeievnslHhqaike........lakglevlAtae.dgvieaieseeak.yfvlgvQWHPE 217
                    + +  r++P lgiC+G+ql  + +      + ++ + ++  + ++   q      +++hav                               + sl a ++g+++ +v++ H+   +          + gl+ +  +e    +e ie +++    ++gvQ+HPE
  MMETSP0890-20130614|31538_1  72 CAKFCRTRRKPYLGICLGMQLAVIEFARAFLPSPSSGKSYTSAEFDDdynQakdsiVKPHHAVVFMpeidkhhmggtmrlgardtllvsqspkdEPSLAAIIYGQDKDRVTERHRHRYEVnpqlvpqlENAGLRFIGKDEsGSRMEIIELPRSVhPYFFGVQYHPE 237
                  56677789*************999998888887776333333322223331233445555555555778888888888899988888888888777777777788888887766554444449999966789********55579******99878899******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.66
# Mc/sec: 1005.74
//
Query:       MMETSP0890-20130614|31549_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-32  111.0   0.0    3.6e-32  110.8   0.0    1.0  1  PF08534.5  Redoxin
    1.5e-11   43.9   0.0    1.7e-11   43.7   0.0    1.1  1  PF00578.16 AhpC/TSA family


Domain annotation for each model (and alignments):
>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   5.3e-36   3.6e-32       2     145 ..      16     167 ..      15     168 .. 0.88

  Alignments for each domain:
  == domain 1    score: 110.8 bits;  conditional E-value: 5.3e-36
                  ------.--S-----TT---EEHHH.HTTSEEEEE---------III.IIH.HHHTHHHH.HH----EEEEE-SS-HHHHHHHHH...TT.TSEEE------HHHHHT..-EE-----..-EE--EEEEEE---EEEEEE-SSTT..S----TTT CS
    PF08534.5   2 aGdkaP.dftlplvatdgktvslsd.fkgkkvvlvfvpgafcptCsa.ehp.yleklaklakekgvdvvavvaqndafvkeawak...eglkipvlsDesasfakalglrltedasag..irtpryavidedgkvvylevepepg..eesdaeav 145
                  +G+++P d+++  ++++++++s sd fkgk+vvl++ pga +ptCs+ ++p y+e+++k+ +ekgvd va+ a+nd+fv++a++k    + ki++l+D+ asf ka g  ++ d +++  ir++r a+i++dgkv   + e  +g  + s+ae++
  MMETSP0890-20130614|31549_1  16 EGEEVPmDGAFMVIDDGPSDLSYSDvFKGKTVVLFGIPGALTPTCSEnQMPgYVENYDKF-MEKGVDTVACLAVNDPFVTSAMSKkvdPDGKILMLADGAASFVKAVG--IDVDTGNFggIRSRRCAMIVKDGKVEVFGDEGGTGftDISSAETM 167
                  6788887666666789*****************************983577******999.***************************777*****************..6678788788***************88887777766777777776 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.5e-15   1.7e-11      10     122 ..      28     148 ..      17     150 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 2.5e-15
   PF00578.16  10 lkdtdgkkvslsdl.kgkpvvLffypkdfcpvCt.telpalaelyeefkkkgvevigvsv.dspeshkkfaekne..lnfpllsDeegevakaygvlnee...kglalratfvidkegkir 122
                  + d    ++s sd+ kgk+vvLf +p++ +p C  +++p + e+y++f +kgv+ +++ + ++p+   ++++k +   ++ +l+D      ka g+  +     g++ r   +i k+gk++
  MMETSP0890-20130614|31549_1  28 VIDDGPSDLSYSDVfKGKTVVLFGIPGALTPTCSeNQMPGYVENYDKFMEKGVDTVACLAvNDPFVTSAMSKKVDpdGKILMLADGAASFVKAVGIDVDTgnfGGIRSRRCAMIVKDGKVE 148
                  55666678999***9******************99******************66665544****9999999888889******************9888999899999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 745.05
//
Query:       MMETSP0890-20130614|31560_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   56.5   0.0    2.8e-06   26.7   0.0    3.5  3  PF00571.23 CBS domain
      5e-09   35.8   0.1    2.3e-08   33.6   0.0    2.2  3  PF01368.15 DHH family
    0.00039   19.9   0.1      0.001   18.5   0.1    1.7  1  PF02272.14 DHHA1 domain
  ------ inclusion threshold ------
      0.093   11.9   0.0       0.17   11.0   0.0    1.4  1  PF08161.7  NUC173 domain


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.42   1.5e+03      23      38 ..     102     117 ..     101     127 .. 0.75
   2 !   25.0   0.0   2.8e-09   9.5e-06       1      54 [.     387     439 ..     387     441 .. 0.97
   3 !   26.7   0.0   8.2e-10   2.8e-06      10      54 ..     459     501 ..     452     503 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.42
                  HHHHHHTTSEEEEEEE CS
   PF00571.23  23 eilrktgvsrlpVvDe 38 
                  ++++k ++++l VvD 
  MMETSP0890-20130614|31560_1 102 KTIEKSDIRALGVVDA 117
                  6899999*******84 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 2.8e-09
                  HHHHCCSSCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHH CS
   PF00571.23   1 vgdlmtkdvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllka 54 
                  ++dlm+  +++++ ++t+++a + l ++   +++V+D+++rl G + l+D++ka
  MMETSP0890-20130614|31560_1 387 AADLMR-SPPIIHDTATVAQARNFLDSHSKPSVFVIDKNNRLRGQLKLSDVVKA 439
                  689***.999*****************************************997 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 8.2e-10
                  CEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHH CS
   PF00571.23  10 vtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllka 54 
                  ++vpp+++l+e   +l++tg   lpV+D  g l+G++t++D+l+a
  MMETSP0890-20130614|31560_1 459 HAVPPEAKLAELEAKLESTGR--LPVIDSQGSLLGVVTRTDVLNA 501
                  589****************88..********************97 PP

>> PF01368.15  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.46   1.6e+03      82      95 ..       8      26 ..       4      46 .. 0.64
   2 !   33.6   0.0   6.8e-12   2.3e-08      10     136 ..      41     201 ..      33     202 .. 0.82
   3 ?   -3.4   0.0       1.8   6.3e+03      59      87 ..     396     424 ..     355     441 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.46
                 EEBS-SS--GGGT.....E CS
                 xxxxxxxxxxxxx.....x RF
   PF01368.15 82 liiDHHrlgglst.....n 95
                 +++ HHr  +l        
  MMETSP0890-20130614|31560_1  8 VVVNHHRANELRSfvrraT 26
                 7999**9998865665542 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 6.8e-12
                  EE--TT--HHHHHHHHHHHHHHHHHH---TTSSS-----EEE--SS........................GGS--HHHHHHHHHS----E...EEEE.EBS-SS--GGGTE-S---............-EE-----HHHHHHHHHH..H--HHHHHHHHH---H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01368.15  10 vighknpDtDsvcSaiglahflnnvekgktfiparsgdltneslfv........................klvilvDhneitqapegvekekgaeil.iiDHHrlgglstnlnpvf............fynepvgststivaefflkngvkmereiaglllsGi 136
                  v++   +D+Ds+++a +la++  n+    + +p +     +   +v                          + +vD +++++ + ++e  ++ae + + DHH  ++  tn+++ f            ++ e+vgst+t+++e ++k +    + +a+l ++Gi
  MMETSP0890-20130614|31560_1  41 VLTTTAADFDSLAAACALAQLWSNLPG-YCEVPTHVVLPRGAMPSVarflayhkhilpvrgfktieksdiRALGVVDASSSERLGRAKEWLEAAESVhVFDHHISSD--TNNKDSFtsqdkeqiriqeWVVEAVGSTTTMIVERLRKYNLVPAPALATLYILGI 201
                  4555668*****************964.5555555444444444446666****************************************99999999*****4444..5455555677777788999*****************9987779999999999998 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.8
                  --HHHHHHHHHS----E...EEEEEBS-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01368.15  59 ilvDhneitqapegvekekgaeiliiDHH 87 
                  i+ D++  +qa +  +   +  + +iD +
  MMETSP0890-20130614|31560_1 396 IIHDTATVAQARNFLDSHSKPSVFVIDKN 424
                  55566666666665555555555566643 PP

>> PF02272.14  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     3e-07     0.001      15      62 ..     325     364 ..     321     369 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3e-07
                  EEEEE----S-HH.HHHHH---TT--------SEE---BSS---HHHH CS
   PF02272.14  15 kvsaRsskkldvrgellreaaeklgGkGGGHadaAgasipdgnkleea 62 
                  +  aRs  ++d r +++ +    +g  GGGH+ aA+ s+ d+  l ++
  MMETSP0890-20130614|31560_1 325 RARARS-ANVDLR-KVMTH----FG-AGGGHPRAAAVSVNDDF-LANF 364
                  445566.555555.55555....56.*************8887.6665 PP

>> PF08161.7  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05      0.17     148     165 ..      58      75 ..      42      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5e-05
    PF08161.7 148 vdqiWsllPgFCelPlDl 165
                  ++q+Ws lPg+Ce P+ +
  MMETSP0890-20130614|31560_1  58 LAQLWSNLPGYCEVPTHV 75 
                  78*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.87
# Mc/sec: 1517.69
//
Query:       MMETSP0890-20130614|31565_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       620  (0.0453482); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 1008.28
//
Query:       MMETSP0890-20130614|31575_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1310.22
//
Query:       MMETSP0890-20130614|31580_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0022   17.6   0.2      0.024   14.3   0.0    2.4  2  PF02627.15 Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> PF02627.15  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.7e-06     0.024      14      65 ..      85     135 ..      73     154 .. 0.79
   2 ?    0.3   0.0     0.041   5.6e+02      12      55 ..     307     348 ..     281     359 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.7e-06
                  GGC.SS-S-HHHHHHHHHHHHHHTT-HHHHHHHHHH.HHHTT--HHHHHHHHH CS
   PF02627.15  14 llareggLdrkereLialavsaangceyCvdaHtra.alkaGvteeeiaeala 65 
                  ++ +e+g ++++++L++l+ ++ + c+y  ++H ++ al++Gv  ++++ +l 
  MMETSP0890-20130614|31580_1  85 IM-SENGCSPALQSLAQLTSACQTCCQY-TQVHFAIqALRRGVHFDKVKSILS 135
                  33.4778*********************.9999888899***99888887765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.041
                  HHGGC.SS-S-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT- CS
   PF02627.15  12 fgllareggLdrkereLialavsaangceyCvdaHtraalkaGv 55 
                  ++l  +++gLd  ++ L+    ++ ++c   ++a    a++ G 
  MMETSP0890-20130614|31580_1 307 DAL--DKPGLDVETKLLACCIFARHHRCLSLERAFSTVARHFGI 348
                  333..355588888888877777777777744777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.41s 00:00:01.18 Elapsed: 00:00:00.85
# Mc/sec: 1381.43
//
Query:       MMETSP0890-20130614|31602_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-108  361.4   1.9   4.3e-108  360.7   1.3    1.3  1  PF05291.6 Bystin


Domain annotation for each model (and alignments):
>> PF05291.6  Bystin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.7   1.3  3.1e-112  4.3e-108       1     292 [.     137     426 ..     137     433 .. 0.95

  Alignments for each domain:
  == domain 1    score: 360.7 bits;  conditional E-value: 3.1e-112
    PF05291.6   1 flkkeeeksktladlilekieekeaekkeekaeeeevelpekldpkvvevyekvgellsrYksGklpkafkilpklenWedileltkPekWtpnavyeatrlFvsnlkekeaqrflelvlLervredieenkkLnvhlYeaLkkalykpaaffkgillPLvesgtctlreaaiiasvlakvsipvlhsaaallklael.eysgatsvfikvlleKkYaLpykvvdalvkyflrfenee..relpvlwHqsllafvqrYkndltedqkeaLlellkkkkHkkispeirreLlasks 292
                  f++k++ +++tla++ileki+ekea k + +++eee +lp    p+vv+ ++ + ++lsrY+sGklpka+k++p+le+We++l l +P+ W+p+ v ++t++F+snl+++ a+ f++ vlLer+r+di+ nkkLn+hlY++L +al+kpaa+fkgillPL++sg+ tl+ea i++svlak sip  h+a++l+kla++ +y+gatsvf+ vll+Kk+aLp kvv al ++f+ f++++  +elpvlwHqsll+fvqrYk+d+ +++ ea+++l+k+++H+ is+eirre++  + 
  MMETSP0890-20130614|31602_1 137 FMHKDAGERRTLASIILEKIAEKEAAK-SMQDDEEEDALP----PQVVKAFTGMVSVLSRYRSGKLPKALKVVPALERWEEVLWLARPDLWSPQCVLATTKVFASNLDPERARIFYSQVLLERCRDDIRANKKLNYHLYQSLYRALFKPAAWFKGILLPLATSGDATLKEALIFGSVLAKASIPQAHAAVVLFKLAQIkRYNGATSVFLVVLLNKKFALPLKVVTALADHFISFASKThaTELPVLWHQSLLVFVQRYKRDIPREKLEAIKHLIKVHSHHAISNEIRREITIITR 426
                  67889999*****************65.555555666666....9*********************************************************************************************************************************************************88**********************************98876699***********************************************975544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1350.67
//
Query:       MMETSP0890-20130614|31613_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-23   82.9   0.0    3.1e-23   82.4   0.0    1.2  1  PF13621.1  Cupin-like domain
    2.5e-09   37.2   0.0    6.6e-09   35.9   0.0    1.7  1  PF02373.17 JmjC domain, hydroxylase
    5.5e-06   25.7   0.0    2.7e-05   23.4   0.0    1.9  2  PF08007.7  Cupin superfamily protein


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   6.8e-27   3.1e-23       3     231 ..      28     270 ..      26     290 .. 0.69

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 6.8e-27
    PF13621.1   3 eff.reyvakrrPviikgalkdwpalqkwkdeylleylkekygdvkvevektpdgvadsfeenedlkkvkfseekmtfkdfldkleagedkrseeylylqnsnlaeefpelred.sdlpfapelfgkkpe..........avnlWlGnsasssslHhDh..yeNlycvvsGrKrftLfppsdapklyvaslee..sgtsvssvdve.......npdlekfprfkdakalevelepGevLYlPalWfHeVsss 231
                  e++ r +  +++P+++ ga+ +wpa q w+    +e l+++yg+ +v v+++++  +    e + l     ++     ++ ++kl+++    +e+ +yl++    ++ pe+ ++ +  +f +  +++ p            ++++lG  + +++lH+D    + ++++++G+K+f+Lf p+da++l  ++ ee   +++++ +  +        pd   +p++++a ++++ l+pG+++ +P +W+H    +
  MMETSP0890-20130614|31613_1  28 EVMdRHMSGQGEPLVVSGATANWPARQ-WT----IENLAARYGSDQVIVNDKAPLCEWDEPEMQTLGLTLAEYASYARGETVKKLSTQ----RECKWYLNSWTPFAQHPEMLDEwTYPAFVQDDLKHDPNekppppcvvdYSKVFLGVAGCTTRLHFDSlgTHAWLAQLQGQKQFILFAPQDAERLRLFDWEEraGNSHYQGMRRAldfthgnLPDPIAYPNLRRAIPFVTILNPGDIILIPRGWWHFALCL 270
                  66756677899*************966.*9....7**************877764443333322232333334444444444444444....356777765555555555554433333333333332222333455555677****************999*************************9988888444444444433444466566668*****************************87655 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.4e-12   6.6e-09       2     114 .]     162     280 ..     161     280 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.4e-12
                  EEEE-TT-EE-CE--GGG-EEEEEEEEE-EEEEEEE-TTCHHHHH.HHHCH-HH---TTGHHCCHCCCHHHH........HHHCCG--EEEEE----EEEE----EEEEEEEEEEEEEEEEE CS
   PF02373.17   2 lylgmpksttpwhiedqglySinylhfgapkvWyivpsekkekle.kvlskknskeqpdllrhlstlispkq........lekagipvyrfvqkpgefVfvfpgayHsvfnlgfniaeavnf 114
                  ++lg+ ++tt+ h ++ g++ ++   ++++k+  ++ ++++e+l    ++++ ++++ + +r   ++ + +         l+ a ip+ ++  +pg+++ ++ g++H +++l++++    nf
  MMETSP0890-20130614|31613_1 162 VFLGVAGCTTRLHFDSLGTH-AWLAQLQGQKQFILFAPQDAERLRlFDWEERAGNSHYQGMRRALDFTHGNLpdpiaypnLRRA-IPFVTI-LNPGDIILIPRGWWHFALCLDSCVTLMRNF 280
                  789*****************.9**********************9877777744444444444444444333333346746666.998877.59*********************9887776 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.13     6e+02     118     155 ..     162     200 ..     155     206 .. 0.70
   2 !   23.4   0.0     6e-09   2.7e-05     178     219 ..     249     290 ..     241     312 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.13
                  EEEE--------SEE-SS..EEEEEEEE--EEEEEE--SS CS
    PF08007.7 118 vYatpggsqgvgpHyDdy..DVfllQleGrkrWrvykptv 155
                  v++  +g  +   H+D+    + l Ql+G+k+  + +p +
  MMETSP0890-20130614|31613_1 162 VFLGVAG-CTTRLHFDSLgtHAWLAQLQGQKQFILFAPQD 200
                  5555555.55667999862257899******988877554 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 6e-09
                  EEE----EEEE----EEEEE---.----EEEEEEEE-TT..- CS
    PF08007.7 178 fvLepGDlLYlPrgviHqgvaedesltlSvglraptaaelle 219
                  ++L+pGD++ +Prg++H + ++d ++tl   +  +t a  ++
  MMETSP0890-20130614|31613_1 249 TILNPGDIILIPRGWWHFALCLDSCVTLMRNFANQTNASHFR 290
                  58************************9977776666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 970.68
//
Query:       MMETSP0890-20130614|31631_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   15.1   0.3       0.11   12.6   0.1    2.4  2  PF11488.3 Transcriptional regulatory protein LGE1
      0.032   12.5   2.5      0.042   12.1   1.7    1.1  1  PF04632.7 Fusaric acid resistance protein family
      0.046   13.8   3.2        2.3    8.3   1.3    2.4  2  PF09026.5 Centromere protein B dimerisation domain
        0.7    9.9   6.4        1.2    9.2   2.2    2.3  2  PF05130.7 FlgN protein
        9.1    6.3   8.7         51    3.9   0.4    2.4  2  PF09686.5 Plasmid protein of unknown function (Plasmid_RAQPRD)


Domain annotation for each model (and alignments):
>> PF11488.3  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   4.4e+03      58      73 ..      37      52 ..      34      60 .. 0.74
   2 ?   12.6   0.1   3.9e-05      0.11      15      47 ..      92     128 ..      77     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
    PF11488.3 58 tqvdrdalnvqltqek 73
                 ++  ++a+ + +t ek
  MMETSP0890-20130614|31631_1 37 AEMCQEAWFASFTGEK 52
                 5666899999999888 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 3.9e-05
    PF11488.3  15 aSe....dettveklrsrvkelesldkeleelksqkl 47 
                  +++    + +t++klr+ + +l +++++l el +q +
  MMETSP0890-20130614|31631_1  92 SADevqaSQRTRQKLRRALRDLRQINQSLPELRRQSC 128
                  3336777999*************************98 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.7   1.5e-05     0.042     261     325 ..      59     139 ..      31     162 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
    PF04632.7 261 aaalaaeeleaavaaLrarlaalrpeae.......adsdtaaallarlaellaeladalaalralqaaiaa.........r 325
                  ++++ a++++++v+++r ++a++++ ae       ++  ++++ ++ l+  l++l +++++l +l+++  +          
  MMETSP0890-20130614|31631_1  59 EEKRRAATIQRRVDRARNAIAEAASVAEigqetsaDEVQASQRTRQKLRRALRDLRQINQSLPELRRQSCDfddnlfaslP 139
                  33678999*************************9999999*************************9986556555555552 PP

>> PF09026.5  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.016        44       7      50 ..     155     199 ..     150     224 .. 0.68
   2 ?    8.3   1.3   0.00085       2.3      16      40 ..     256     280 ..     243     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.016
    PF09026.5   7 egeedsesdseeeeedeeedeede.deedeeeddevpvpsfgeam 50 
                    ++d +s s ee++d   + e     +d ++d   p p++  a+
  MMETSP0890-20130614|31631_1 155 RTQNDINSCSIEEDDDVSSQGESSySVQDVNNDHWQPAPAYLAAL 199
                  567888888888888866555444155566666667777776555 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00085
    PF09026.5  16 seeeeedeeedeededeedeeedde 40 
                  s  +++d++e e+++de+d+  +  
  MMETSP0890-20130614|31631_1 256 SCHDDDDDDECEHHDDEHDDSRSHL 280
                  3455677777788888888876655 PP

>> PF05130.7  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.2   0.00042       1.2      50     113 ..      56     126 ..      43     138 .. 0.57
   2 ?    1.1   0.0      0.13   3.7e+02     118     139 ..     208     230 ..     200     233 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00042
    PF05130.7  50 laeleele.eerqklleelgle.aeeatlsella.....edeelaelwqelkelleelqelnerNgeller 113
                  ++e e+   +++q+ ++++++  ae+a+++e+ +     e ++ +  +q+l+ +l++l+++n+   el ++
  MMETSP0890-20130614|31631_1  56 ANEEEKRRaATIQRRVDRARNAiAEAASVAEIGQetsadEVQASQRTRQKLRRALRDLRQINQSLPELRRQ 126
                  33333333244444444444447777777777778844455555555566666666666666655555444 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
    PF05130.7 118 vqrllnilrgarkk.sttYgakG 139
                  + +  ni++++ ++ s tYg++ 
  MMETSP0890-20130614|31631_1 208 TTQKNNIITKKINHsSLTYGPDA 230
                  555678999999999*****986 PP

>> PF09686.5  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   5.7     0.027        74       5      58 ..      56     118 ..      52     122 .. 0.84
   2 ?    3.9   0.4     0.019        51       4      31 ..      97     124 ..      93     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.027
    PF09686.5   5 dsaaEreelaaalrqldavealleraeaaakqsaks.........RyhFdYarlaaDlkrira 58 
                  +++ E+ + a+++r++d + +++++a+++a+  +++         R +   +r+ +Dl++i++
  MMETSP0890-20130614|31631_1  56 ANEEEKRRAATIQRRVDRARNAIAEAASVAEIGQETsadevqasqRTRQKLRRALRDLRQINQ 118
                  56789999***************9999999866655556677778999999999999999987 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.019
    PF09686.5   4 adsaaEreelaaalrqldaveallerae 31 
                  ++s+  r++l +alr l +++++l + +
  MMETSP0890-20130614|31631_1  97 QASQRTRQKLRRALRDLRQINQSLPELR 124
                  4566778899999999999998886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1103  (0.0806758); expected 273.4 (0.02)
Passed bias filter:                      507  (0.0370831); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.44s 00:00:01.12 Elapsed: 00:00:01.13
# Mc/sec: 599.09
//
Query:       MMETSP0890-20130614|31634_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-33  116.5   0.0    1.3e-33  116.3   0.0    1.0  1  PF01266.19 FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   9.4e-38   1.3e-33     111     358 .]      21     267 ..       4     267 .. 0.84

  Alignments for each domain:
  == domain 1    score: 116.3 bits;  conditional E-value: 9.4e-38
                  TTEEEE-HHHHHHHSTTBTTTT--EEEETTEEEEEHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTC...EE.EEEEES.EEEEEEEE----THHHHHCCGTCCT..TEEEEEEEEEEEE-TCCHSCCCE.EEEEEEECGGTSEEEEEET.TEEEE-.......EEESCEEESCBHHHH.HHHCCTHHHHHHHHHHHHHHSGGGGGSEEEEEEEEEEEEETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHHHH CS
   PF01266.19 111 ldvellsaeevrerepllspdlkgglfypddgqvdpaklvkalaraaeelGveiiegtkVtglereggr...vsgvetedgsiradkvvlAaGawsskllkllgldl..pirpvrgqvlvtepltdelaaav.ilgpvavldargvfvlpre.gevlvg.......ttdgrldrgataeessgedvdvdlevdelleaaakllpqlkdaeilrawaGlrpvtpdglpvigevpevpglyvatGhsghGftlapaaGkllael 358
                     e+l+a +++++   l++        ++++qv+pa+l+  + ++     +++i+  +++g+e + ++   v+gv+t++g i +d+vv+AaG+ws +l + l + +  p++++++++++++  + + ++a   l+  ++  + ++ v+pr  g+v+++       +t  rl++g++ ++   + ++  ++v+++ + +++l+p+++++++ ++ a++rp+ pd+lp+ig+ +  +++++atG +++G+  ++++G+++a+l
  MMETSP0890-20130614|31634_1  21 AHPEWLDATDTKAKL--LES-------HEGSAQVNPAELCEQFFKH---SEAHLITS-AARGFEFSPNDntlVTGVKTDQGIIPCDQVVVAAGIWSVLLEDWLPN-FrlPMEGIYSTSVIFDDKDGKINQAPsALFCAEDSNSCHLEVYPRSdGTVYICgiggsehVTKPRLREGGDLDDA-AKMKANSNRVEAAKKSISALVPDFSNVQPRATNACMRPCAPDALPIIGKTESAKNIFIATGGNCWGILWSAITGHIIADL 267
                  466899999999999..885.......6999**********99999...5577****.**************************************996444422.245*************888877655523333334444567789999************99777888888888888.433333344*********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.83
# Mc/sec: 886.36
//
Query:       MMETSP0890-20130614|31629_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-28   98.6  10.1    1.7e-19   69.7   0.7    2.9  3  PF14308.1  X-domain of DnaJ-containing
    4.1e-24   83.9   4.0    1.6e-23   82.0   2.8    2.2  1  PF00226.26 DnaJ domain
     0.0002   21.3   2.6    0.00047   20.1   0.7    2.4  2  PF09333.6  ATG C terminal domain
  ------ inclusion threshold ------
        4.4    5.3   5.7       0.36    8.9   0.1    1.8  2  PF00771.15 FHIPEP family


Domain annotation for each model (and alignments):
>> PF14308.1  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.6      0.58     2e+03     103     130 ..     173     200 ..     165     209 .. 0.56
   2 !   34.2   0.0   3.9e-12   1.3e-08       3     115 ..     322     460 ..     321     477 .. 0.67
   3 !   69.7   0.7     5e-23   1.7e-19      96     188 ..     554     646 ..     541     658 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.58
    PF14308.1 103 ksmeemekeeeeegeeteeelaemeekv 130
                  + +++++ke++++++++e+ +++++ + 
  MMETSP0890-20130614|31629_1 173 SEQKRLAKEDDDDNNDDEQPQKKKQVQN 200
                  5677777777777654444444433333 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 3.9e-12
    PF14308.1   3 qkkreeeLaekLrdr.lseyv....................dgnkde..............Fkeklekeie.eLkeesFglellhtIGkvYenkAnaflgksktflglsgifasvkekgksvkstfsalssaldaqksmeemekeeeee 115
                  q+kr  +La +L d  l +yv                    d    +              F++ + +ei+ eL   +Fg  l+  I++vY ++A+++lg       ++g + ++ ++ +++ +++ ++ssa ++ + +++++k++ ++
  MMETSP0890-20130614|31629_1 322 QRKRTCQLAVTLADElLASYVhdspikdyfeqntdddssmsD----DrssksaqnqakeaaFRAYIATEIAtELVATPFGSTLVRVIAYVYDTVATKYLGG------VRGAALRFSDTAHKAGKRLDVASSATKVFSRARKATKAAAKS 460
                  889999999999876257899888888777665544444430....034444555555666*****999987***************************65......555555555555555555555555555555555555544433 PP

  == domain 3    score: 69.7 bits;  conditional E-value: 5e-23
    PF14308.1  96 ssaldaqksmeemekeeeeegeeteeelaemeekvtgkilaaawaiskfdiestlrkvCdkvLkDksvdkktRikRAeaLkilGkifqkvkrs 188
                  ss+  +++++e++  ++ +e   te+  +  e ++t+ +l+aaw+++++d+e tlr+ C+k+L+Dksv+++ R+kRA+aLki++++f+k + +
  MMETSP0890-20130614|31629_1 554 SSVDTIKRLVESIGDNDISEIALTEAAARDREAEMTNSVLEAAWRVTVIDVETTLRESCSKLLRDKSVSEDIRKKRAKALKIVADVFKKKADE 646
                  55555667888899999999999****************************************************************987654 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   2.8   4.8e-27   1.6e-23       1      64 []     202     264 ..     202     264 .. 0.98

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 4.8e-27
                  HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                  ++Y+iL++++ a+d++IkkaY+k+al  HPDknk+d+ +a+ kf++i+ AyevLsdp +r++yd
  MMETSP0890-20130614|31629_1 202 ELYDILEIEPIATDAQIKKAYYKKALHNHPDKNKNDP-QAATKFQKISRAYEVLSDPISRQRYD 264
                  58***********************************.9************************8 PP

>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.7   1.4e-07   0.00047       9      84 ..      52     127 ..      46     138 .. 0.95
   2 ?   -2.3   0.0       1.3   4.4e+03      27      58 ..     628     659 ..     619     663 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.4e-07
    PF09333.6   9 qPadlreGlakAysslreglkdtaqtllavasevheqkglqgavgavlkaiPiavvrPligateavsktlgGvrnq 84 
                   P+ l +G+  A+ s+  g      +l+a +  + ++ g++ga++++      av  P+ig+  av ++++G+ n 
  MMETSP0890-20130614|31629_1  52 APKHLGQGISRAIGSVAAGAGGGVAALVAGPVVGARAGGASGAAKGFGMGLAGAVALPVIGVFGAVGQIVQGAVNT 127
                  599*********************************************************************9985 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.3
    PF09333.6  27 glkdtaqtllavasevheqkglqgavgavlka 58 
                  +  ++ + +++v +++ +++g ++++ ++l++
  MMETSP0890-20130614|31629_1 628 KRAKALKIVADVFKKKADESGHSKVFSELLRQ 659
                  44456666777778888888888888887776 PP

>> PF00771.15  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.8      0.42   1.4e+03     295     336 ..     173     215 ..     159     237 .. 0.64
   2 ?    8.9   0.1    0.0001      0.36     437     518 ..     579     660 ..     547     662 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.42
   PF00771.15 295 lkkkk.keeekeeeeeekeeeeeeeeeeesveevlkvdplele 336
                   ++k+ ++e++++++++++ +++++ +++++ ++l+++p+  +
  MMETSP0890-20130614|31629_1 173 SEQKRlAKEDDDDNNDDEQPQKKKQVQNTELYDILEIEPIATD 215
                  3333333444445555555555667777778888888877654 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0001
   PF00771.15 437 eeeekeeaekagytvvdpstvlathlsevlkknaaellgrqevqklldelekeapklveelvpkklslselqkvlqrLlker 518
                  ++++ +eae+++  +  + +v +  ++++l+++ ++ll  ++v++ + + + +a k+v+++ +kk + s  +kv+ +Ll+++
  MMETSP0890-20130614|31629_1 579 AAARDREAEMTNSVLEAAWRVTVIDVETTLRESCSKLLRDKSVSEDIRKKRAKALKIVADVFKKKADESGHSKVFSELLRQQ 660
                  4455566777777777777889999******************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1098  (0.0803101); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.39s 00:00:01.49 Elapsed: 00:00:00.86
# Mc/sec: 1889.22
//
Query:       MMETSP0890-20130614|31653_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.44s 00:00:00.74 Elapsed: 00:00:00.51
# Mc/sec: 202.05
//
Query:       MMETSP0890-20130614|31666_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-08   32.7   0.1    9.3e-08   31.5   0.0    1.6  1  PF01256.12 Carbohydrate kinase
  ------ inclusion threshold ------
      0.065   12.2   0.2      0.083   11.9   0.1    1.3  1  PF02110.10 Hydroxyethylthiazole kinase family


Domain annotation for each model (and alignments):
>> PF01256.12  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.4e-11   9.3e-08     147     240 ..      21     137 ..       6     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.4e-11
                  HHHHHHT.TEEEEE----EEEEE---EEEE----GGG------------HHHHCCTTS.......................SHHHHHHHHHHHHHHHHHHHCCCT-GG-HCHHHHHHH CS
   PF01256.12 147 elaqkln.avvllkgekdvivspegevlinstgssalakGGsGDvLaGligalLaqne.......................asyeaaiaaawlhgaasdeaaekkgvgmlatelskii 240
                  +l+q+l+ ++++ kg  d+i + ++ vl++++ +s +++GG GD L+G+ + +  +                         + + aa aa++l ++as+ a++ k ++m+a+++++++
  MMETSP0890-20130614|31666_1  21 HLSQALGgVTIIKKGRIDLISD-GQSVLAVQDTGSPRRCGGIGDLLSGSTAVFTTWTSflstddpiaaidpdsnttlatarPVLWAAYAACVLARRASASAFAIKRRAMTAPDILDKL 137
                  4566665156666777777666.999******************************9999*****************999888999***************************99986 PP

>> PF02110.10  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.2e-05     0.083     144     179 ..      19      64 ..       4     141 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
   PF02110.10 144 vqkvArkl.rtvvvvtGevDvvsdgkkvlkikn.Gte........l 179
                   +++ + l +++++  G++D++sdg++vl++++ G++        l
  MMETSP0890-20130614|31666_1  19 LMHLSQALgGVTIIKKGRIDLISDGQSVLAVQDtGSPrrcggigdL 64 
                  4444555414677789*************99852554444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 602.83
//
Query:       MMETSP0890-20130614|31678_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.8   0.9      0.012   13.7   0.6    1.0  1  PF06160.7 Septation ring formation regulator, EzrA
      0.068   12.5   0.1       0.11   11.8   0.1    1.3  1  PF06623.6 MHC_I C-terminus
       0.31   10.5   2.9       0.31   10.4   2.0    1.0  1  PF04156.9 IncA protein


Domain annotation for each model (and alignments):
>> PF06160.7  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   2.5e-06     0.012     125     174 ..      27      79 ..      13      81 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-06
    PF06160.7 125 eeLkeseeknrkeveelkekYeelrktl...laksfsyGealdeLekqLeele 174
                   +L  ++e+nr+   el ++Y+ l +++    a++  yG+  + Le+ L++ e
  MMETSP0890-20130614|31678_1  27 MNLTAEKEENRDDKLELDKEYRRLSREVeeiRADEALYGTKCRRLEDILANRE 79 
                  689999******************9875222688999***********99876 PP

>> PF06623.6  MHC_I C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.4e-05      0.11      17      29 .]      21      33 ..      20      33 .. 0.96

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.4e-05
    PF06623.6 17 SaQsSDvSLtdcK 29
                 S+QsS++ Lt++K
  MMETSP0890-20130614|31678_1 21 SSQSSNMNLTAEK 33
                 9**********98 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.0   6.8e-05      0.31      96     151 ..       4      66 ..       2      81 .] 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.8e-05
    PF04156.9  96 eleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelr.......e 151
                  +++++++   +++s  ++ ++ + +l  e+++ ++  ++l++++ +l++e++e+r        
  MMETSP0890-20130614|31678_1   4 QVSAFQTPDRSTTSFTTSSQSSNMNLTAEKEENRDDKLELDKEYRRLSREVEEIRadealygT 66 
                  7888888889999999999************************************55444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1025  (0.0749707); expected 273.4 (0.02)
Passed bias filter:                      718  (0.0525161); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.45s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 265.90
//
Query:       MMETSP0890-20130614|31679_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    6.9   4.8        3.1    5.4   3.3    1.8  1  PF11696.3 Protein of unknown function (DUF3292)


Domain annotation for each model (and alignments):
>> PF11696.3  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.3   0.00023       3.1     403     461 ..     396     452 ..     378     478 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00023
    PF11696.3 403 aaPlPPPPssslrkakskpasikekqlkleaseeeidqaaapeleasaaeeeekaeaek 461
                  + PlPPPPs s+++a+ +++  +++ l++++  ++     + +++++ +++++++ ++k
  MMETSP0890-20130614|31679_1 396 SPPLPPPPSPSITNAPLHAS--QNSPLNAPPRASDFPGLNSASVQQQPTKKKTNSGQKK 452
                  67*************99877..6667788777777777666666666666665443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       741  (0.0541984); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.41s 00:00:01.28 Elapsed: 00:00:00.73
# Mc/sec: 1634.78
//
Query:       MMETSP0890-20130614|31680_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-20   71.7   0.0    8.6e-20   70.7   0.0    1.6  1  PF01926.18 50S ribosome-binding GTPase
    2.4e-19   69.4  11.2    1.7e-18   66.6   7.7    2.3  1  PF01018.17 GTP1/OBG
    1.3e-06   27.6   0.0    2.4e-05   23.5   0.0    2.5  3  PF02421.13 Ferrous iron transport protein B
      7e-05   22.2   0.0       0.23   10.7   0.0    2.5  2  PF00009.22 Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.033   13.9   0.0    1.6  1  PF04182.7  B-block binding subunit of TFIIIC
      0.016   14.9   0.0       0.72    9.5   0.0    2.4  2  PF00350.18 Dynamin family
      0.016   14.1   0.0      0.025   13.5   0.0    1.3  1  PF13175.1  AAA ATPase domain
      0.032   14.5   0.0       0.12   12.7   0.0    2.0  2  PF08477.8  Miro-like protein


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0     5e-23   8.6e-20       1      94 [.     212     318 ..     212     367 .. 0.71

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 5e-23
                  EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE........ETTE.......EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHH...H CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev........kkek.......iilvDtPGiiegasedkeiegikkylekveradvlllvvdasavlke...a 94 
                  ++++vG+pN+GKS+L+ aL+ ++  k++ yp+tT+ + +++         +  +       i+l+D+PG+iega+e++ ++gi+ +l++v ra +l++vvdas+ ++    +
  MMETSP0890-20130614|31680_1 212 DIGFVGKPNAGKSSLLAALSAATP-KIASYPFTTLRPHIGKCefkkvdpkT--NaiidfdsIQLADVPGLIEGAAEGR-GLGID-FLRHVFRARALVFVVDASNGINSllhD 318
                  689*****************8755.************77554446655431..2556666568**************9.77787.****************98855443332 PP

>> PF01018.17  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   7.7     1e-21   1.7e-18       1     130 [.      20     166 ..      20     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 1e-21
                  EEEEEEEEEE-------------BTTC---...------------EEEEE-----SSGGGGT--EEE--------TTT--------EEEEE----EE.............EETTT--EEEE..------EEEEE---------CCC-B CS
   PF01018.17   1 fvDqveievkaGnGGnGivsfrrekyvekG...GPdGGdGGrGGdvilevdenldtLldfrykkhlkaedGkkGksknraGkngeDlvikvPvGtvv.............ldeekeellaD..lveagqrllvakGGkgGlGnaafks 130
                  f D+++++v aG+GG Giv+++  +   kG      GG+GGrGGd+i+ + e +++L + +    ++ e+Gk+G+s++r G+n+++    vP+Gt v             ++  ++e+la+  l+++g ++ vakGG+gG Gna +  
  MMETSP0890-20130614|31680_1  20 FCDRATVKVIAGSGGRGIVAYQDKRGARKGirrRACGGNGGRGGDIIVVASEAVNSLYNQHG-AVVQGENGKNGSSNQRRGANANNTYYYVPPGTIVrvknvpealdfekINALNNEILAEyhLIKHGDQVNVAKGGNGGYGNAGLSR 166
                  78********************99999999333467*********************98665.6789****************************984433333322222234468888854489******************98865 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.4e-08   2.4e-05       3      56 ..     213     277 ..     211     322 .. 0.72
   2 ?   -1.3   0.0      0.54   9.2e+02     127     162 ..     290     325 ..     279     343 .. 0.68
   3 ?    0.8   0.0      0.13   2.1e+02     105     158 ..     358     415 ..     351     438 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.4e-08
                  EEEE--TT---HHHHHHH----TB--------S--BB--EEE...........TTEEEEEEE--- CS
   PF02421.13   3 valvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklkl...........kgkeveivDLPG 56 
                  + +vG+pn+GK++l+ al+ a+ k++ +p +T   + gk+++           + +++++ D+PG
  MMETSP0890-20130614|31680_1 213 IGFVGKPNAGKSSLLAALSAATPKIASYPFTTLRPHIGKCEFkkvdpktnaiiDFDSIQLADVPG 277
                  779***********************************999844444333332334455555666 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.54
                  HHHHHHH----EEEEBCCGTB--HHHHHHHHHHCTC CS
   PF02421.13 127 lkkLselLgvpvvktvarkkkgieelleaiievaek 162
                  ++ L++ +  + + +v   ++gi++ll+ i+ ++++
  MMETSP0890-20130614|31680_1 290 IDFLRHVFRARALVFVVDASNGINSLLHDIYVIHNE 325
                  455777777777777778888888888888666555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.13
                  T-SEEEEEETHHHHHC-...--EB-HHHHHHH--.--EEEEBCCGTB--HHHHHHHHH CS
   PF02421.13 105 gvpvvvalnmiDeaekk...gikidlkkLselLg.vpvvktvarkkkgieelleaiie 158
                  g p ++  n++D ++++    i ++lk++++ +g ++v++ +a +++gi +l +++ +
  MMETSP0890-20130614|31680_1 358 GRPAILFANKFDLLSQEirdTILFQLKRIHTDIGfLDVLTGSALTGDGIPQLANRLRR 415
                  56788888999988875222466788999999995589999***********998755 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0005      0.86       3      31 ..     210     238 ..     208     244 .. 0.89
   2 !   10.7   0.0   0.00014      0.23     122     185 ..     358     416 ..     345     419 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0005
                  EEEEEEEESTT---HHHHHHHHHHCCCCE CS
   PF00009.22   3 irnigiighvDhGKtTltdallykagais 31 
                  i  ig++g  ++GK++l++al +++ +i+
  MMETSP0890-20130614|31680_1 210 IADIGFVGKPNAGKSSLLAALSAATPKIA 238
                  7789******************9998886 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
                  T--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHH CS
   PF00009.22 122 gvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivel 185
                  g + i++ NK D++ +e++ ++    +++ ++ ++       v+ gSal+g+gi +L + + +l
  MMETSP0890-20130614|31680_1 358 GRPAILFANKFDLLSQEIRDTILFQLKRIHTDIGF-----LDVLTGSALTGDGIPQLANRLRRL 416
                  5679**********999887776655577555544.....569************999887665 PP

>> PF04182.7  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.9e-05     0.033       7      37 ..     322     352 ..     317     355 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
    PF04182.7   7 lLelIassRysGitqsdLaklskqDprslfy 37 
                  +  +Iass + G+t   ++ +s+qD  +++y
  MMETSP0890-20130614|31680_1 322 IHNEIASSQWRGYTDENIIIESDQDDEKVHY 352
                  5679**************************9 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00042      0.72       1      21 [.     213     233 ..     213     249 .. 0.81
   2 ?    2.8   0.0     0.048        82     101     140 ..     268     310 ..     250     324 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00042
                  EEEE--TT---HHHHHHH--- CS
   PF00350.18   1 iavvGsqSaGKSSllnaLlge 21 
                  i +vG+ +aGKSSll aL  +
  MMETSP0890-20130614|31680_1 213 IGFVGKPNAGKSSLLAALSAA 233
                  789**************9865 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.048
                  -SEEEEE------------....HHHHHHHSTTEEEEEEEETTS CS
   PF00350.18 101 kgltlvDtPGldsvnkrdq....elveeyikkadiilavtdanh 140
                  +++ l D PGl +++++ +    + ++    +a+++++v+da++
  MMETSP0890-20130614|31680_1 268 DSIQLADVPGLIEGAAEGRglgiDFLRHVF-RARALVFVVDASN 310
                  57899********99999855544444333.4566666666655 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.025       5      90 ..     169     268 ..     166     354 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
    PF13175.1   5 kIkNyrsiksle..................einlde....sln..viiGeNgsGKttILealeklknrknmlfikknlklkieglfkllvkekkkikisesdnkadidky 90 
                  +I++yr+++++e                  ei l e    s++    +G+ ++GK+++L al    ++k++ +            +    ++k+++k+ + + +a+id+ 
  MMETSP0890-20130614|31680_1 169 NIQAYRKFNETEstskfykspfghtkrnhgEIRLLElelqSIAdiGFVGKPNAGKSSLLAAL-SAATPKIASYPFT---------TLRPHIGKCEFKKVDPKTNAIIDFD 268
                  8*****************99999888888844444455555556689***************.4444444433333.........3333457777777777777777776 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     7e-05      0.12       4      87 ..     215     312 ..     213     346 .. 0.57
   2 ?   -2.3   0.0       3.2   5.5e+03     109     119 .]     359     369 ..     354     369 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7e-05
    PF08477.8   4 vvGdkgvGKssllsqlvgeefp....kkklpeeikgdtlavk.......tlevdvdtellelwdlggreelkkehell.......lkkadaillvydltdee 87 
                   vG++++GKssll++l   + +    +      +    +++        ++++++d ++++l d+ g +e ++e   l       + +a a ++v+d +++ 
  MMETSP0890-20130614|31680_1 215 FVGKPNAGKSSLLAALSAATPKiasyP----FTTLRPHIGKCefkkvdpKTNAIIDFDSIQLADVPGLIEGAAEGRGLgidflrhVFRARALVFVVDASNGI 312
                  59***************9999954442....33333333221111122244444444447778887776665554332222224466777777887777754 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.2
    PF08477.8 109 ipvilvgnklD 119
                   p il++nk+D
  MMETSP0890-20130614|31680_1 359 RPAILFANKFD 369
                  699******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.41s 00:00:01.23 Elapsed: 00:00:00.71
# Mc/sec: 1549.19
//
Query:       MMETSP0890-20130614|31691_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-11   41.3   0.2    5.1e-10   38.9   0.1    2.0  1  PF08007.7  Cupin superfamily protein
  ------ inclusion threshold ------
      0.026   14.1   0.1      0.046   13.2   0.0    1.4  1  PF02311.14 AraC-like ligand binding domain
      0.056   13.5   0.0       0.11   12.5   0.0    1.5  1  PF02373.17 JmjC domain, hydroxylase
      0.057   12.8   0.0       0.13   11.6   0.0    1.6  1  PF07883.6  Cupin domain


Domain annotation for each model (and alignments):
>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   1.5e-13   5.1e-10     108     164 ..     105     162 ..      71     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.5e-13
                  HHHH-----EEEEE-----.---SEE-SSEEEEEEEE--EEEEEE--SSTT-SS-EE- CS
    PF08007.7 108 mesfslvgsnvYatpggsq.gvgpHyDdyDVfllQleGrkrWrvykptvpelelksee 164
                  m  +s v  n+Yat +g +   + H+D  DV++lQ+ G+ rW+++++++++ +++ ++
  MMETSP0890-20130614|31691_1 105 MALYSPVSINAYATNAGVSvAAPRHFDAQDVLALQITGQQRWHLWDDLDQKNTFRVKP 162
                  555688***********4314468**********************888888776554 PP

>> PF02311.14  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.046      18     110 ..     128     227 ..     117     256 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
                  EE-----EEEEEEE----EE-.....---EE------EEEE-----EEE---T..TSEEEEEEEEE---GGGGGGG----SBTTB--..B---TTTHHHH CS
   PF02311.14  18 phvhdeyvihyvteGtgrlrl.....ngrtydlgpGdlfLlppgepHdyesds..edgweyrwlyfegelleriledssilagapllpalledeelaqll 110
                  +h   + v+ + + G++r++l     + +t++++p+dl+++p  +pH     +  +d+   ++l+f +++l+ +l+d ++  +  + p+ l +++la++ 
  MMETSP0890-20130614|31691_1 128 RHFDAQDVLALQITGQQRWHLwddldQKNTFRVKPNDLVFIPAFTPHATDTIGfsSDDDNSFHLTFGLDFLAFALDDPEYPGRTVFPPGALSSSSLAAQA 227
                  566666678888889999887333334456*****************98887765557788999999999999999888776655554445444444443 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05      0.11      79     107 ..     154     182 ..     123     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.4e-05
                  --EEEEE----EEEE----EEEEEEEEEE CS
   PF02373.17  79 pvyrfvqkpgefVfvfpgayHsvfnlgfn 107
                  + ++f  kp+++Vf+++ ++H++ ++gf+
  MMETSP0890-20130614|31691_1 154 QKNTFRVKPNDLVFIPAFTPHATDTIGFS 182
                  557999****************9998885 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.8e-05      0.13      36      58 ..     155     177 ..     122     182 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.8e-05
                  TEEEEE-TT-EEEE-TT-EBEEB CS
    PF07883.6  36 geeveleaGdsvyfpagtpHrfr 58 
                   +++++++ d+v++pa tpH+  
  MMETSP0890-20130614|31691_1 155 KNTFRVKPNDLVFIPAFTPHATD 177
                  459*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 1128.61
//
Query:       MMETSP0890-20130614|31697_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.09   12.2   0.0       0.22   10.9   0.0    1.7  1  PF04072.9 Leucine carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> PF04072.9  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.6e-05      0.22     129     176 ..     167     213 ..     130     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
                  EE--TTSHHHHHHHHHHTT-TTSTEEEEEESSGGGS-HHHHHHHHHHH CS
    PF04072.9 129 vavdlrdddwldaLaaagfdadrptlflaegllmYlteeavdallrai 176
                   + d++++d ld++  + ++ drp +  +  +l+Y+t+e  ++l++++
  MMETSP0890-20130614|31697_1 167 AQFDIHHPDALDQIL-NIYSDDRPLICFLSNILCYCTDESTADLFQKL 213
                  678999999999999.678999***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       264  (0.0193095); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.57
# Mc/sec: 1214.71
//
Query:       MMETSP0890-20130614|31705_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28   11.3   2.4          1    9.5   0.7    2.1  2  PF10210.4 Mitochondrial 28S ribosomal protein S32


Domain annotation for each model (and alignments):
>> PF10210.4  Mitochondrial 28S ribosomal protein S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7   7.6e-05         1      17      67 ..      72     124 ..      65     130 .. 0.64
   2 ?    0.8   0.0      0.04   5.4e+02      20      52 ..     133     165 ..     127     175 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 7.6e-05
    PF10210.4  17 ayhPevdvPYehtkPlprkde..lkssaevkeqvlkaklekvkkkekevaree 67 
                   yhP +d+P++h + l+ ++e  ++++++ +e+  k   e++  ++++  r e
  MMETSP0890-20130614|31705_1  72 GYHPPPDIPFDHGQRLQPVQEepISTTEKEEEKKRKKDDEEEIIQDPGLLRTE 124
                  59***********9997555400444444444444444445555556666555 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.04
    PF10210.4  20 PevdvPYehtkPlprkdelkssaevkeqvlkak 52 
                  Pe +vP  + k l   +e ++++  +e +l++k
  MMETSP0890-20130614|31705_1 133 PEHEVPVSQLKNLVDCSEEEGEQDDQEALLRSK 165
                  899999999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.91
# Mc/sec: 576.71
//
Query:       MMETSP0890-20130614|31718_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-06   25.2   2.1    7.8e-05   22.3   0.3    2.3  2  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4   0.1    0.0084   1.1e+02      75     106 ..      65      96 ..       4     106 .. 0.77
   2 !   22.3   0.3   5.7e-09   7.8e-05      31      95 ..     128     199 ..     101     206 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0084
                  TSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHH CS
   PF00787.19  75 kdeefiekrrkgLeeyLqrllnhpelrksevl 106
                   +e+++  r  +Le y+q+ l+    + s+++
  MMETSP0890-20130614|31718_1  65 DEESQFSNREVSLEPYIQHALKEHKESASREV 96 
                  4578899999*********9998877775554 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 5.7e-09
                  -......SCEEEEEEEHHHHHHHHHHHHHHTT...TSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHH CS
   PF00787.19  31 g......akewtvkRrYsdFeeLhskLlrkfp...rlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrll 95 
                  +      +  w v+Rr+++F++L++ L ++     +++l +  +  l +   k ++++iekrr+ +++y   l+
  MMETSP0890-20130614|31718_1 128 SvggkhkKLDWIVERRFREFVHLKKVLAKRDVrieEIQLSKTIRYGLTKL--KAKQSIIEKRRQVIDHYTSTLA 199
                  3445555778**********************999999999999999999..999************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 1115.92
//
Query:       MMETSP0890-20130614|31732_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.83
# Mc/sec: 167.46
//
Query:       MMETSP0890-20130614|31731_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-08   33.3   0.0    1.8e-07   30.8   0.0    2.1  2  PF13180.1  PDZ domain
     0.0052   16.8   0.0      0.016   15.2   0.0    1.8  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.6e-11   1.8e-07       3      81 ..      25     123 ..      23     124 .. 0.85
   2 ?   -0.6   0.0      0.17   1.1e+03       4      38 ..     235     275 ..     229     281 .. 0.66

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 2.6e-11
    PF13180.1   3 iGvsvsqlen..........trgvlvvsVkessPaakaglkpGDiilkvdgkkv...ksl.........tdlkslllkkkpGdtvkltvlRdgkkktvevk 81 
                  +Gv+++  en          ++gvlv+ V+++s  +++ l+pGD++l++d++++     +          ++ +++ + +pG++v ++++R g+++ v+ +
  MMETSP0890-20130614|31731_1  25 LGVTTQRCENaglrsalalgESGVLVTRVASNSCVSGK-LRPGDVLLSIDQERIacdG-SvavrggaerVHFAHAVTSRRPGEQVLVEFSRAGNRHFVNAT 123
                  89999999999999999999**************9999.***************6541.13444444446666********************99988766 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.17
    PF13180.1   4 GvsvsqlentrgvlvvsVkessPaakaglkp........GDii 38 
                  G++v++l     + + +  +s+P++k  l          GDii
  MMETSP0890-20130614|31731_1 235 GIQVKNLLH--AAQILEQVQSDPSNKYFLLEftppnsrpGDII 275
                  666666666..77777777777777765444555555556665 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.3e-06     0.016      20      57 ..      33      77 ..      19      79 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.3e-06
                 STTS........SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBG CS
   PF00595.19 20 sdkr........dkgifvsevvpggaaeagglkeGDkIlsvNgvdv 57
                 ++++        + g+ v++v  ++    + l++GD++ls++++ +
  MMETSP0890-20130614|31731_1 33 ENAGlrsalalgESGVLVTRVASNSCVSGK-LRPGDVLLSIDQERI 77
                 44445555566678*************999.***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.41s 00:00:01.12 Elapsed: 00:00:00.71
# Mc/sec: 1387.19
//
Query:       MMETSP0890-20130614|31753_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-58  195.6   0.1      3e-58  195.4   0.1    1.1  1  PF01257.14 Respiratory-chain NADH dehydrogenase 24 Kd subunit
     0.0041   17.2   0.1       0.66   10.1   0.0    2.3  2  PF07845.6  Protein of unknown function (DUF1636)


Domain annotation for each model (and alignments):
>> PF01257.14  Respiratory-chain NADH dehydrogenase 24 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.1   4.4e-62     3e-58       3     143 ..      40     183 ..      38     185 .. 0.96

  Alignments for each domain:
  == domain 1    score: 195.4 bits;  conditional E-value: 4.4e-62
                  HHHTTS-..--GGGHHHHHHHHHHH.-----HHHHHHHHHH----HHHH---GGG-SS--SS----EEEEEE-SHHHHT---HHHHHHHHHH-------------EEEEEES----GGG-S-EE-SSS--B---HHHHHHHH-- CS
   PF01257.14   3 eiiakyp..rkrsaliplLklaqeq.egylseeaieevaellglppaevyevatFYsmfnlkpvgkyhiqvCtttaCalrgseeilealeeklgikagettadgkftleeveClGaCanAPvvqindevyedltpekveeilea 143
                   i++kyp   kr+a+iplL+laq+q  gyl+ +a+++va+ll++ +++vyevatFY+mfn++pvgky iq+C+tt+C+++gseei++++e++lgik+ge t+dg ftl+eveClG CanAP+vqind++ye+ltp+++ ++l+ 
  MMETSP0890-20130614|31753_1  40 LIMSKYPanFKRAATIPLLDLAQRQhGGYLPLAAMDRVAKLLQVGKMDVYEVATFYTMFNRTPVGKYFIQLCGTTPCMVCGSEEIKQTIEKHLGIKEGEDTKDGLFTLREVECLGSCANAPMVQINDDYYENLTPASTIKLLDL 183
                  5899***999***************557**************************************************************************************************************999985 PP

>> PF07845.6  Protein of unknown function (DUF1636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0041        28      55      81 ..      12      38 ..       3      52 .. 0.81
   2 !   10.1   0.0   9.7e-05      0.66      33      61 ..     137     165 ..     114     179 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0041
    PF07845.6 55 gctvalsaegkltYvfgdldpeedaed 81
                 +++ +   ++ ++Y+f d++pe++a++
  MMETSP0890-20130614|31753_1 12 PVAAHRDTPDNTKYTFWDFTPENHARA 38
                 5556667899***********988765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 9.7e-05
    PF07845.6  33 aeaelkeeleireveCLsaCkrgctvals 61 
                   e+ +   +++reveCL  C+++  v+++
  MMETSP0890-20130614|31753_1 137 GEDTKDGLFTLREVECLGSCANAPMVQIN 165
                  334444459*************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 814.10
//
Query:       MMETSP0890-20130614|31768_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-05   22.8   0.0    5.9e-05   22.4   0.0    1.1  1  PF01189.12 NOL1/NOP2/sun family


Domain annotation for each model (and alignments):
>> PF01189.12  NOL1/NOP2/sun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.3e-09   5.9e-05     191     255 ..      16      76 ..       9      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.3e-09
                  HHHHHHHHHHHGGGB....-----EEEEES---TTTTHHHHHHHHHH-TT-EE------S--... CS
   PF01189.12 191 aelqkelLkaaidlvgidtkeggvlvYstCsvlveeneagiklflqkrpdvelvltklseskeal 255
                  a+lq ++L+ + + +    k gg++vYstCs+ +  n   i + l +++     ++k++++++ l
  MMETSP0890-20130614|31768_1  16 AKLQLAILRCMLNNL----KIGGTIVYSTCSLDPQQNDDIISAVLDDAKFKHPHTLKVDHPLKNL 76 
                  789************....**********************999999987777778888777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 523.15
//
Query:       MMETSP0890-20130614|31765_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.4   0.0      4e-06   26.6   0.0    1.9  2  PF12850.2  Calcineurin-like phosphoesterase superfamily domain
    3.9e-05   23.0   0.2    0.00026   20.3   0.0    2.0  2  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.56   3.8e+03     101     121 ..     159     179 ..      64     191 .. 0.68
   2 !   26.6   0.0   5.8e-10     4e-06       3     132 ..     299     532 ..     298     547 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.56
    PF12850.2 101 laellkeagadlvflGHtHkp 121
                   +e +k+a  +++ lGH   +
  MMETSP0890-20130614|31765_1 159 REEQAKNAADRFITLGHAALR 179
                  335566666666666665444 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 5.8e-10
    PF12850.2   3 iaiiSDlHgnldaleavledi..kevdlilhaGDlvep....eevvell.edi.pvlavrGnhD..........eaelpkelavel................................................................llaaaaleiegdrvllvhgtpls................................vqsseeelaellkeagadlvflGHtHkpkvekrggtlvv 132
                  + ++SDlH  +++ ++ ++++  ++ d+i++aGD+ ++    e+++ ll  ++  v +  Gnh+                     +                                                                  a++ +++++ ++ ++ +++ +                                   ++ el+  +++  + + ++GH+H +  e   gt++v
  MMETSP0890-20130614|31765_1 299 LWAVSDLHADVAKNREWVRALplRQQDAIIVAGDIASKladlETNLTLLaSKFkYVFYTFGNHElfltppgyatS----------VhkmfeilnlcdslgiitssaflgsdvlvvpmfswyrrrgpdaglleffdaackwpwniesslddAVANFFFKLNEGTLRFCAEMRSKlfssnnsdpplvsfshfvpyidhlfpgfvafrHVMGAPELDDQINSLSPLVHVFGHSHINVDEIVHGTRFV 532
                  5689*****************999**********966344555555555155666********744444432220..........1222233445555555555555555555555555555666666666666666666666666656655555555556666666666655777777777777777777777777777766543356668*********************99999998887 PP

>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.8e-08   0.00026       2      80 ..     298     366 ..     297     379 .. 0.93
   2 ?    0.1   0.1      0.06   4.1e+02     172     200 ..     492     520 ..     462     521 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.8e-08
                  EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHH CS
   PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpg 80 
                  r ++++DlH + + +    +++ ++    + d ++++GD+ +   + ++ l ll       +  ++vf + GNHE +  
  MMETSP0890-20130614|31765_1 298 RLWAVSDLHADVAKN----REWVRALPLRQQDAIIVAGDIASKLADLETNLTLL------ASKFKYVFYTFGNHELFLT 366
                  7899**********9....********************************988......***************9865 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.06
                  .SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
   PF00149.23 172 ggelfgpdalekllekygvdlvlrGHeHv 200
                  ++   g + l++  +   + + ++GH+H 
  MMETSP0890-20130614|31765_1 492 FRHVMGAPELDDQINSLSPLVHVFGHSHI 520
                  555678888999999999999*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.39s 00:00:01.33 Elapsed: 00:00:00.85
# Mc/sec: 1697.18
//
Query:       MMETSP0890-20130614|31774_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-28  100.4  18.3    3.4e-28   98.8  12.7    1.6  1  PF04889.7  Cwf15/Cwc15 cell cycle control protein
     0.0017   17.7   5.9     0.0025   17.1   4.1    1.2  1  PF10500.4  Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.017   14.3  11.3       0.02   14.0   7.8    1.1  1  PF05285.7  SDA1
      0.063   11.2   7.0      0.071   11.0   4.9    1.1  1  PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
       0.12   10.3   6.1       0.12   10.2   4.2    1.1  1  PF05505.7  Ebola nucleoprotein
       0.18   11.0  10.4       0.23   10.6   7.2    1.1  1  PF07423.6  Protein of unknown function (DUF1510)
       0.37   10.9   9.6       0.47   10.6   6.6    1.3  1  PF06424.7  PRP1 splicing factor, N-terminal
       0.42    8.4  13.4       0.47    8.2   9.3    1.1  1  PF02724.9  CDC45-like protein
          3    6.9   6.4        4.1    6.4   4.4    1.3  1  PF05009.7  Epstein-Barr virus nuclear antigen 3 (EBNA-3)


Domain annotation for each model (and alignments):
>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8  12.7   2.3e-31   3.4e-28       5     204 ..       1     185 []       1     185 [] 0.81

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 2.3e-31
    PF04889.7   5 hrPtfdparGkeeqggarlv..aqskkyssrdLpahtkLKtRkegqgteeelekrdlraeLleaEaaakakkekskkkralenakkeeeleaakeaeededeekeakrkkkleeareidaddsdkseeesdesdddsdddddeDetaeLlrELekiKkeraeekereeeekaaeeekereeeiltgNPLlnksedfkvkrrW 204
                  h Pt++pa G+ ++ g+  +  a s ++  rdLp ++k+K+R   q     lek+ l++e l++E + k+ +     ++a + + ++ +l  +ke  ed+            + ++  d+dd+ +se++sd++d++sd+ddd+D++ ++ rELeki+ker+ee+ ++e +k+a e+++re   lt+NPLl  +++ +vkr+W
  MMETSP0890-20130614|31774_1   1 HLPTWNPALGEASDYGNWSSggARSMQVADRDLPNQLKMKYRTGDQLPP--LEKQTLKTEVLRRESQVKKMD---LLLQARAPIVARPDLLVTKEIFEDDIL----------S-KKYNDKDDQ-SSESNSDSDDNSSDSDDDDDDQLAIARELEKIRKEREEERIKKEAQKQADEQNARETASLTSNPLLHIAPSGAVKRKW 185
                  77************998776225788999*************8755544..58*************999999...444444455555555555555554422..........2.233455553.4555699999999999***************************************************99********* PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.1   1.7e-06    0.0025      53     121 ..     101     164 ..      86     183 .. 0.56

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
    PF10500.4  53 kkkrrersssssssssssssssssssskseekrkkrkkkkkkrekkkekkekkklkkkgkkkeaeerrv 121
                   + +     ss s s s   ss+s++   ++ +  r+ +k + +++ e++ kk+++k++ +++a e   
  MMETSP0890-20130614|31774_1 101 YNDKDD--QSSESNSDSDDNSSDSDDDDDDQLAIARELEKIR-KEREEERIKKEAQKQADEQNARE--T 164
                  222332..3444445555667777777777777777777776.34444444444444444444222..2 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   7.8   1.3e-05      0.02     109     180 ..     102     163 ..      50     175 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
    PF05285.7 109 dedeDeegewvdvesdeeeessDsedeeeesee..........eeeeeesekkkkeesdeekseeeeeeaaeeeeeeakeek 180
                  +   D++++  + +sd +++ssDs+d+++++ +          e                  +ee  +++a+++++e+++ +
  MMETSP0890-20130614|31774_1 102 N---DKDDQSSESNSDSDDNSSDSDDDDDDQLAiarelekirkE-----------------REEERIKKEAQKQADEQNARE 163
                  2...2222333333333335666666655333344433322211.................111111111122222222222 PP

>> PF05470.7  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.9   4.7e-05     0.071     123     196 ..      91     163 ..      58     179 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.7e-05
    PF05470.7 123 qfeddikkyredPeseeeeeeedededdegedeedeeedsvkkteevkkssesklkeekeeeedeeeeeeklsk 196
                   feddi + + + +++++ +e ++d+dd+ +d++d+++d+   ++e++k  + + +e+ ++e++++ +e++  +
  MMETSP0890-20130614|31774_1  91 IFEDDILSKKYN-DKDDQSSESNSDSDDNSSDSDDDDDDQLAIARELEKIRKEREEERIKKEAQKQADEQNARE 163
                  589999775544.7777777888888888888888899999999999997777665555555555544444333 PP

>> PF05505.7  Ebola nucleoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.2   8.1e-05      0.12     550     614 ..      99     162 ..      29     175 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8.1e-05
    PF05505.7 550 sedqaddddsslpslesddddasdseqdedltevaPPaPvyrdekekdevdhkeaneqdetseir 614
                  ++++  dd+ss ++ +sdd+++ ++++d d  ++a      r+e+e++ ++++++++ de +++r
  MMETSP0890-20130614|31774_1  99 KKYNDKDDQSSESNSDSDDNSSDSDDDDDDQLAIARELEKIRKEREEERIKKEAQKQADE-QNAR 162
                  233333444677777777775555566666667887777777777777777666655554.3333 PP

>> PF07423.6  Protein of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.2   0.00015      0.23      47     115 ..      94     163 ..      60     173 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
    PF07423.6  47 deeeeeksedeekteeeevkeeekeaakdedkeddses.ekkdeeseeeeeeekekkeeeseedeketee 115
                  d+  ++k +d++++++e+  ++++++++++d++dd+ + +++ e+ ++e eee+ kke ++++de+  +e
  MMETSP0890-20130614|31774_1  94 DDILSKKYNDKDDQSSESNSDSDDNSSDSDDDDDDQLAiARELEKIRKEREEERIKKEAQKQADEQNARE 163
                  3444555556666666666555555555555555322212222222333333333333333333333333 PP

>> PF06424.7  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.6   0.00031      0.47      42      99 ..      99     159 ..      42     170 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00031
    PF06424.7  42 krlqd.....gdneglfskkkydkedeeadriyeeidekldkrrkkrrekkekeekekneken 99 
                  k+++d     +++++ + ++++d++d+++d++  +i + l+k rk+r+e++ k+e++k+ +e+
  MMETSP0890-20130614|31774_1  99 KKYNDkddqsSESNSDSDDNSSDSDDDDDDQL--AIARELEKIRKEREEERIKKEAQKQADEQ 159
                  22332111112233333333445666666654..56666666666666666555555544333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.3   0.00031      0.47     136     203 ..      98     165 ..      54     170 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00031
    PF02724.9 136 dedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekee 203
                   ++ +++dd+++e++s+s++++s+sd+d++d+    +e e+ rk+++e++ +k+++++  ++  ++++
  MMETSP0890-20130614|31774_1  98 SKKYNDKDDQSSESNSDSDDNSSDSDDDDDDQLAIARELEKIRKEREEERIKKEAQKQADEQNARETA 165
                  33344444555555555555556666666666666666666666666656666666666665555555 PP

>> PF05009.7  Epstein-Barr virus nuclear antigen 3 (EBNA-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.4    0.0027       4.1     201     233 ..      94     128 ..      85     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0027
    PF05009.7 201 lealrlegepdedaivEtsseeedvesesdde..d 233
                   ++l  + + ++d+ +E +s+++d  s+sdd+  d
  MMETSP0890-20130614|31774_1  94 DDILSKKYNDKDDQSSESNSDSDDNSSDSDDDddD 128
                  566767778899***********999999988442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1422  (0.104008); expected 273.4 (0.02)
Passed bias filter:                      618  (0.0452019); expected 273.4 (0.02)
Passed Vit filter:                       108  (0.00789936); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.44s 00:00:01.04 Elapsed: 00:00:00.57
# Mc/sec: 764.36
//
Query:       MMETSP0890-20130614|31776_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-13   49.6   1.5    2.8e-12   47.0   0.4    2.6  2  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.088   1.2e+03     123     142 ..      85     104 ..       6     106 .. 0.79
   2 !   47.0   0.4     2e-16   2.8e-12       4     210 ..     131     324 ..     128     325 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.088
                  -EE-EEEESS-B-S----EE CS
    PF05721.8 123 svvgvwialedateenGclr 142
                   +v+++ a++d +e++ c+ 
  MMETSP0890-20130614|31776_1  85 FAVQAAEAFDDNNETRACTL 104
                  45667778888888888875 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 2e-16
                  ---EEE-----HHHHHHHHHH---T........HHHHHT-------EE----B-----BS..GGTEEEE---HHH......HHHHHHHHH----SEEE...EEEEE..E---S-----E.EEE-GGGTS-EE-..---EE-EEEESS-B-S----EEEE---------.......................-EEE----..............----........ CS
    PF05721.8   4 dGylviegflsaeevealraeieal........ldralesgdkidfffeekaaadedgll..eksinkvghflhp......rkvadlvrailgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflptdp..eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                  dG ++ + +l+  +v +lr+ + ++           +l+ +++ d + +++++++ +g        +  g +lh         + +lvr+ilg+++     ++  +  i+  p+  g  q wH D  +l+ d   ++++ +v + l d++++nG++ f PGSH             +++          d + ++ +   aGda++f+ rl H++ +N s+++R 
  MMETSP0890-20130614|31776_1 131 DGICCQPEALDSVTVSQLRDSALDYyedvlhtvH--QLNLEEELDNEGFATFKGRDRGRFdmVVPAFVKGGALHSvcfgesAPWLPLVRSILGNKAR---LCHVGV--IIALPDAAG--QKWHSDGDHLHPDLhlPPHAANVFVPLVDVSATNGATEFAPGSHAD--W--------WAK----------DAKLVINA--VAGDAIIFDWRLKHRGLTNNSSAPRP 324
                  5666666666666666666666666666666332..33333333333333333333333322466666677777778888889**********9984...366666..999997555..89*********4437789**************************99..2........222..........33344444..58*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.77
# Mc/sec: 1238.64
//
Query:       MMETSP0890-20130614|31775_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-22   79.7   0.0    5.3e-22   78.2   0.0    1.8  1  PF00566.13 Rab-GTPase-TBC domain
     0.0018   17.8   0.2     0.0053   16.3   0.2    1.8  1  PF12937.2  F-box-like


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   7.7e-26   5.3e-22      81     214 .]     475     613 ..     473     613 .. 0.91

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 7.7e-26
   PF00566.13  81 aiynpeigYcqGmnfiaallLlvvl.deeeafwcfvsLl.nkklrdlfkpslpglqrdlqileellkkhdpelykhlekeeldlslfaikWfltlfv..relpletvlrlwD.lflegakflllrialailkllrkell 214
                  a++ p++gYcqG+ +++a+ L  ++ d++ a  + ++Ll +  l +lf p lpgl+r++  l+ l+  ++p+++++l ++ l ++lfa++W+ tlfv   +lp+ ++ rlw  l++e +   l r+ala++ + +++ll
  MMETSP0890-20130614|31775_1 475 ARKYPNVGYCQGLDYLVAFALRASClDTDLAVTLVQALLdHLELGELFAPGLPGLKRRCRELRLLVDARCPQIAQRLREHALAVDLFAAPWLQTLFVyvDALPIAVLDRLWTlLLFERSFKPLHRVALALFVTIEPKLL 613
                  6789*****************655559999**********9*******************************************************96678***********6666777555999****9988888875 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   7.8e-07    0.0053       5      33 ..     274     303 ..     273     318 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.8e-07
                  -HHHHHHHHTTS.-HHHHHHH----HHHHH CS
    PF12937.2   5 PdEiLlqIFsyL.ppsdLlrlalVCrrWrr 33 
                  P  +  +IF +L + ++L+ ++lVCr Wr+
  MMETSP0890-20130614|31775_1 274 PQSVVQRIFICLgSVYSLAIGTLVCRAWRN 303
                  788999******99**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       637  (0.0465916); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.36s 00:00:01.48 Elapsed: 00:00:01.01
# Mc/sec: 1831.67
//
Query:       MMETSP0890-20130614|31792_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.074   12.0   6.2        0.1   11.6   4.3    1.3  1  PF04582.7  Reovirus sigma C capsid protein
       0.21   10.8   6.2      0.092   11.9   2.8    1.5  1  PF10368.4  Putative cell-wall binding lipoprotein
       0.34   11.2   8.2       0.74   10.1   1.6    2.7  3  PF09177.6  Syntaxin 6, N-terminal
       0.75    8.6   3.1       0.74    8.7   1.6    1.3  1  PF07851.8  TMPIT-like protein
        1.2    9.1   4.0       0.65   10.0   0.8    1.9  2  PF09440.5  eIF3 subunit 6 N terminal domain
        3.4    7.7  12.0         21    5.2   8.3    2.1  1  PF00804.20 Syntaxin
        3.8    7.7   5.5        7.3    6.8   0.3    2.4  2  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.3   5.2e-05       0.1      45     139 ..      34     132 ..      14     181 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-05
    PF04582.7  45 aslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladls.elvsahdaalsslqte...vdanstdisnlksdvsang 139
                    l++s +++ +kls+ +a+  ++ + ++ v++ +++++ e a++ s v  l ++  + + +++s+ +++++ l+ +   ++a++ +is  +    a++
  MMETSP0890-20130614|31792_1  34 TELEKSAAEAAKKLSEFEAKRSEILKKIQAVRSRVRSIRIETAQILSQVTVLKATQGQPTqSIISDSESTIAALKADiadIEAQTISISQSQPARVAEA 132
                  4689999999999***************99****99999999999999999887766654168999999999999762115677777776655544444 PP

>> PF10368.4  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.8   4.7e-05     0.092      22     113 ..      28     119 ..      18     133 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.7e-05
    PF10368.4  22 ealekaaeqEkkfeeeqkkleelEkkeqelyeqiielnkddneeikklseeavenvekRekllkk.Ekesiekseeefksakktiekiedkkl 113
                  +al k  e Ek+++e +kkl e E k +e+ ++i ++       i  +  +++++v   +    +  + +i +se  + ++k  i++ie + +
  MMETSP0890-20130614|31792_1  28 VALAKGTELEKSAAEAAKKLSEFEAKRSEILKKI-QAVRSRVRSIRIETAQILSQVTVLKATQGQpTQSIISDSESTIAALKADIADIEAQTI 119
                  5788999***************************.9999999************999766655551566789999999999999999998766 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.018        34      20      60 ..      11      52 ..       1      63 [. 0.79
   2 ?   10.1   1.6   0.00038      0.74       8      71 ..      55     128 ..      50     158 .. 0.69
   3 ?   -0.9   0.1         1     2e+03      11      43 ..     151     183 ..     137     191 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.018
    PF09177.6 20 lyrsweelrsdst.sskelkeltkeLenalesiewdledLee 60
                 ++++ e+ ++++t ++  +  + +eLe++  +++++l+++e 
  MMETSP0890-20130614|31792_1 11 VLTKGESVTNENTgTELVALAKGTELEKSAAEAAKKLSEFEA 52
                 566666677776667888889999***************986 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00038
    PF09177.6   8 eevqksidkleslyrsweelrsdst.........sskelkeltkeLenalesiewdledLe.eavsvveknpek 71 
                  +e+ k+i++++s +rs + ++ +           + +  ++  ++ e+++ +++ d+ d+e +++s+++++p++
  MMETSP0890-20130614|31792_1  55 SEILKKIQAVRSRVRSIRIETAQILsqvtvlkatQGQPTQSIISDSESTIAALKADIADIEaQTISISQSQPAR 128
                  56667777776666655433333323344888888899999*******************96799999999887 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1
    PF09177.6  11 qksidkleslyrsweelrsdstsskelkeltke 43 
                  q++++++++  ++++  + +s+++ ++++++ +
  MMETSP0890-20130614|31792_1 151 QAELASIRQGDDETRLALAKSQAQSRIEKAEIR 183
                  333333333333333333333344444444444 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6   0.00038      0.74       7      93 ..      34     127 ..      30     146 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00038
    PF07851.8   7 kelekefkeleethkkykqkleeleklqekcasaikkqkkrlkelkkslkklkkk.......ltkeekekvekleeeikerkaqlfdmesflPk 93 
                  +elek+  e  ++ +++  k +e+ k  +++ s +++ + +  ++ +++  lk++       + ++++++++ l+ +i+  +aq + + +  P+
  MMETSP0890-20130614|31792_1  34 TELEKSAAEAAKKLSEFEAKRSEILKKIQAVRSRVRSIRIETAQILSQVTVLKATqgqptqsIISDSESTIAALKADIADIEAQTISISQSQPA 127
                  5677778888888888888888888888888888888888888888888888777444444344455555555555555555555555555555 PP

>> PF09440.5  eIF3 subunit 6 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8   0.00033      0.65      52     100 ..      35      87 ..      23     110 .. 0.72
   2 ?   -1.1   0.1      0.86   1.7e+03      94     113 ..     150     170 ..     105     183 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00033
    PF09440.5  52 dlekeleneeeipaelaekreevlkelkeleeevaki....lklledeevvkn 100
                  +lek +++  ++ +e+++kr e+lk+ + +++ v +i    +++l++ +v+k+
  MMETSP0890-20130614|31792_1  35 ELEKSAAEAAKKLSEFEAKRSEILKKIQAVRSRVRSIrietAQILSQVTVLKA 87 
                  5677777788889*******************999983222344444444444 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.86
    PF09440.5  94 deevvknlrs.dkkanlefLe 113
                   +++++ +r+ d ++ l++ +
  MMETSP0890-20130614|31792_1 150 IQAELASIRQgDDETRLALAK 170
                  223344444444444444444 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.3     0.011        21       2      97 ..      47     145 ..      46     188 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.011
   PF00804.20   2 mseffeqveeIrgeiekisekveelkrlhsrilaspd..pd......kqtkeeleeltaeikklankirskLksleqsieqeegqnrssadlrirktqhstlsr 97 
                  +sef ++ +eI + i+ +++ v+ ++ +  +il+  +  +       ++  ++ e+++a  k ++ +i+++  s++qs     +  r    +r+ ktq+s  ++
  MMETSP0890-20130614|31792_1  47 LSEFEAKRSEILKKIQAVRSRVRSIRIETAQILSQVTvlKAtqgqptQSIISDSESTIAALKADIADIEAQTISISQS-----QPARVAEAVRLAKTQLSLATQ 145
                  68999999****************************943113344444455555555555555555555555556666.....79999999*******997665 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3    0.0037       7.3       6      55 ..      43      92 ..      34     110 .. 0.71
   2 ?    2.9   0.6     0.061   1.2e+02       9      52 ..     132     177 ..      94     196 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0037
    PF06156.8  6 lfdklseleeqleelleeleelkkelkelleenaelkleneklrerleel 55
                   +klse+e + +e+l++++++++++ ++  e a++  +++ l+    + 
  MMETSP0890-20130614|31792_1 43 AAKKLSEFEAKRSEILKKIQAVRSRVRSIRIETAQILSQVTVLKATQGQP 92
                 46778888888888888888888888888777777777777776655544 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.061
    PF06156.8   9 klseleeqleelleeleelkkelkell..eenaelkleneklrerl 52 
                  +++  ++ql+  +++++++++el+++   +++++l l  ++ ++r+
  MMETSP0890-20130614|31792_1 132 AVRLAKTQLSLATQQTAAIQAELASIRqgDDETRLALAKSQAQSRI 177
                  3333333444444444444444444431122333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1112  (0.0813341); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.42s 00:00:01.05 Elapsed: 00:00:00.95
# Mc/sec: 597.83
//
Query:       MMETSP0890-20130614|31815_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.006   15.7   0.4      0.013   14.7   0.1    1.7  2  PF13202.1  EF hand
     0.0096   15.6   0.0      0.027   14.2   0.0    1.8  1  PF13405.1  EF-hand domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.031   13.4   0.0    1.7  2  PF00036.27 EF hand
        0.1   12.0   0.1       0.19   11.2   0.0    1.5  1  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   4.1e+03      14      22 ..      89      97 ..      89      98 .. 0.70
   2 !   14.7   0.1   3.7e-06     0.013       2      18 ..     100     116 ..      99     117 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.2
                 --B-HHHHH CS
    PF13202.1 14 GkIsreELk 22
                 G +s+++L 
  MMETSP0890-20130614|31815_1 89 GIVSIDDLN 97
                 667888875 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.7e-06
                  HHHHHHH--S----B-H CS
    PF13202.1   2 kdtFrafDlNgDGkIsr 18 
                  +++F+a+D++++G++s+
  MMETSP0890-20130614|31815_1 100 RAIFDALDADRSGFLSA 116
                  578************96 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.9e-06     0.027       1      19 [.      98     116 ..      98     117 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.9e-06
                  HHH---GCC-------B-- CS
    PF13405.1   1 elreaFklfDkdgdGkida 19 
                  e r++F+++D d++G+++a
  MMETSP0890-20130614|31815_1  98 EARAIFDALDADRSGFLSA 116
                  5799*************96 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.4   8.1e+03      15      22 ..      89      96 ..      88      97 .. 0.78
   2 ?   13.4   0.0   9.1e-06     0.031       1      18 [.      98     115 ..      98     117 .] 0.91

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.4
                 SEBEHHHH CS
   PF00036.27 15 GkIsfeEf 22
                 G +s +++
  MMETSP0890-20130614|31815_1 89 GIVSIDDL 96
                 77888886 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.1e-06
                  HHHHHHHHHCTTTSSEBE CS
   PF00036.27   1 elkeaFkefDkDgdGkIs 18 
                  e++ +F+ +D D++G++s
  MMETSP0890-20130614|31815_1  98 EARAIFDALDADRSGFLS 115
                  6799************98 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.6e-05      0.19      25      43 ..      97     115 ..      76     116 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.6e-05
    PF13833.1  25 eevdilfrefDtdgdGkis 43 
                  +e++++f+++D+d++G +s
  MMETSP0890-20130614|31815_1  97 NEARAIFDALDADRSGFLS 115
                  68**************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 424.81
//
Query:       MMETSP0890-20130614|31833_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.025   14.1   0.9      0.042   13.3   0.6    1.4  1  PF00612.22 IQ calmodulin-binding motif
      0.034   13.5   0.7      0.052   12.9   0.5    1.2  1  PF11997.3  Domain of unknown function (DUF3492)
       0.14   11.2   4.8        0.2   10.7   3.3    1.3  1  PF04502.8  Family of unknown function (DUF572)
       0.19   12.0   2.4       0.37   11.1   1.7    1.4  1  PF09271.6  LAG1, DNA binding


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   1.2e-05     0.042       2      21 .]     102     121 ..     101     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHHHHHCHCH CS
   PF00612.22   2 kaaikIQaawRgylaRkryk 21 
                  +a+++ Q  wR+++aR  y+
  MMETSP0890-20130614|31833_1 102 QAVLCVQTIWRRFQARTLYQ 121
                  799*************9886 PP

>> PF11997.3  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   1.5e-05     0.052      28     139 ..      11     118 ..       9     143 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
    PF11997.3  28 klpeveFavlaigsdeeeygelkYelPeNVveveevylveeeeasaapkkkkgekealetleellealkeeeaeeeellkelleelaekakklsledfleskeaweilteqy 139
                  k+ e++ +v  + ++++++g++++ lP+ V+ v ++ l ee+    +  + ++ +++++++++     k+++++++ +++++++  + ++ +++++++l  +++w  ++ + 
  MMETSP0890-20130614|31833_1  11 KMGEISLSVDLLPPRRNKQGKVVWSLPNDVNMVPRLGLNEEKL--VFA-EYRRLRKEKKDANRERAKSKSSQRSKSAVIEDTINTSNLEE-QVKEQAVLCVQTIWRRFQART 118
                  67788888999999*************************9943..333.33334444444444433444444445556666555555555.677777777777777665433 PP

>> PF04502.8  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.3   5.9e-05       0.2     208     292 ..      59     147 ..       3     189 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.9e-05
    PF04502.8 208 rrlakdedkedekekkketseksakssssakatdiekksaakkseeessskakknsesklkskkalkslvvkkkaapeesksse............v 292
                  rrl k+       +k  +++ +++kss+++k++ ie++ ++++ ee+ +++a      ++ ++ ++ +l ++kk+ +++s+  +            v
  MMETSP0890-20130614|31833_1  59 RRLRKE-------KKDANRERAKSKSSQRSKSAVIEDTINTSNLEEQVKEQAVLCV-QTIWRRFQARTLYQTKKNDSKQSSLVDdifsvqeeeissV 147
                  333222.......3446778888888888889999999999999998888888776.99***************98877765555555444444441 PP

>> PF09271.6  LAG1, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   0.00011      0.37      43     131 ..      72     157 ..      54     164 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
    PF09271.6  43 pnaiaaseqateivalidiggkeesekekqklkldeqkklgaaalktlyisdsdkrkevklkvklflgsgqelgtfeskrikviskpsk 131
                  ++++++s+ +++ v+   i+ ++ +e+ k+++ l  q  ++  + +tly ++++ +k+  l +++f  +++e++   s r++    psk
  MMETSP0890-20130614|31833_1  72 RAKSKSSQRSKSAVIEDTINTSNLEEQVKEQAVLCVQTIWRRFQARTLYQTKKNDSKQSSLVDDIFSVQEEEIS---SVRVSLSTDPSK 157
                  344445555566777777777777777777888888888999999*********************98886664...555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       810  (0.0592452); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.74
# Mc/sec: 1178.75
//
Query:       MMETSP0890-20130614|31865_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0021   18.1   0.1     0.0038   17.3   0.0    1.4  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.8e-07    0.0038     113     163 ..      75     125 ..      68     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.8e-07
                  EECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 113 dakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                    +l  p ++ lNH  ++ +++q   ++++  ++l+ t+dI+ +eE+ ++Y
  MMETSP0890-20130614|31865_1  75 RKWLIAPGIDALNHAHPSYTNAQLYITNDDSILELVCTKDIESNEEIKHNY 125
                  567888999*****997755555555579*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 920.55
//
Query:       MMETSP0890-20130614|31861_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.044   13.5   0.0    1.4  1  PF12697.2  Alpha/beta hydrolase family
      0.085   12.0   0.0       0.26   10.5   0.0    1.8  2  PF09994.4  Uncharacterized conserved protein (DUF2235)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.4e-06     0.044      47     107 ..     101     192 ..      78     281 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.4e-06
                  --HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT.................................- CS
    PF12697.2  47 dtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas.................................a 107
                   tl + +++l+a+l++ + +++ ++G S G+++al +aa+ +++  gl +++p +p p +                                 +
  MMETSP0890-20130614|31861_1 101 FTLSRVIRALRAALQEPR-TQLNIIGLSRGAVAALTVAAMLGEDP-GLFVLGPKPPPPQEksspsagdssagddatpklsfstmarevneesnV 192
                  466677777777777766.88*******************88864.677777777555555566665555444444444444444444444331 PP

>> PF09994.4  Uncharacterized conserved protein (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.7e-05      0.26      66     117 ..      89     145 ..      82     196 .. 0.77
   2 ?   -2.3   0.0      0.29     2e+03     108     146 ..     247     286 ..     244     297 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.7e-05
    PF09994.4  66 ggatgsgldenvaeaykf...lvkny.epgdeiflfGfSrGAytaRalagli.dkig 117
                  g +++ g++ ++    +    l  +  ep  ++ ++G+SrGA++a  +a ++ ++ g
  MMETSP0890-20130614|31861_1  89 GIVFAYGMQGQCFTLSRViraLRAALqEPRTQLNIIGLSRGAVAALTVAAMLgEDPG 145
                  5667777777776665554434333358999999*****************955555 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.29
    PF09994.4 108 alaglidkigl.lsadneelvrfawkafakyelrrakeke 146
                  +la++++++g  lsa+n+ + + +++ ++  +++r ++k 
  MMETSP0890-20130614|31861_1 247 SLANILNSAGTfLSAKNNSQASKKVSSYKPTQTERLRAKS 286
                  6888888888756666655555555555543333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:01.03
# Mc/sec: 1188.87
//
Query:       MMETSP0890-20130614|31876_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 218.98
//
Query:       MMETSP0890-20130614|31882_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   15.5   1.9      0.012   15.2   0.2    1.9  2  PF02185.11 Hr1 repeat
  ------ inclusion threshold ------
      0.012   15.2   1.9      0.013   15.0   1.0    1.3  1  PF12486.3  ImpA domain protein
      0.042   13.0   0.2      0.057   12.6   0.1    1.3  1  PF11359.3  Glycoprotein UL132
      0.044   13.4   3.5      0.062   13.0   2.4    1.2  1  PF14073.1  Centrosome localisation domain of Cep57
        8.9    6.0   9.1       0.36   10.4   1.4    2.1  2  PF04394.9  Protein of unknown function, DUF536


Domain annotation for each model (and alignments):
>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.44   1.2e+03      40      50 ..      52      62 ..      38      67 .. 0.71
   2 !   15.2   0.2   4.6e-06     0.012      40      64 ..     115     139 ..     100     142 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.44
                 XXXXXXXXXXX CS
   PF02185.11 40 sklreseqkie 50
                 ++++ ++qki+
  MMETSP0890-20130614|31882_1 52 AEKNKVQQKID 62
                 45566666665 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 4.6e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11  40 sklreseqkielLkeqLeklqkrsq 64 
                  s+l e+e+ki++L++qLe+ +kr++
  MMETSP0890-20130614|31882_1 115 SRLAEAETKINTLEKQLEETEKRRN 139
                  6899***************999876 PP

>> PF12486.3  ImpA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.0   4.9e-06     0.013      35      83 ..      91     139 ..      70     141 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.9e-06
    PF12486.3  35 lqvkelsqqWqqqlearalpaeelegwsearseLqqLadrLleldekrg 83 
                  ++  ++ ++W ++ +ar  ++++ ++ +ea++++++L+++L e +++r+
  MMETSP0890-20130614|31882_1  91 KRKAKIPKRWTSNKNARLDTESSFSRLAEAETKINTLEKQLEETEKRRN 139
                  56677889**************************************997 PP

>> PF11359.3  Glycoprotein UL132
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.1e-05     0.057      92     145 ..      69     124 ..      44     135 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
    PF11359.3  92 eaakl.lddddddgsssllgsgsrrgripaasssskyqrlekr.dydeleeeasaa 145
                   +++l +  +  +gss+  g+  r+++ip   +s+k  rl+++  + +l e++++ 
  MMETSP0890-20130614|31882_1  69 KTTNLaVSSSSPEGSSTTSGAAKRKAKIPKRWTSNKNARLDTEsSFSRLAEAETKI 124
                  44554245667799***************************852577777766654 PP

>> PF14073.1  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.4   2.3e-05     0.062       9      84 ..      57     135 ..      50     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.3e-05
    PF14073.1   9 LqeKirrlELEkkqAeeklqtlsreateskkvl...eeeeqerelqaeevskqkkeltskLssaearCslLEkqleymr 84 
                  +q+Ki++  L  k  +  + + s e + + +     + +  +r ++++++  + +   s+L+ ae++ + LEkqle + 
  MMETSP0890-20130614|31882_1  57 VQQKIDNKILNNKTTNLAVSSSSPEGSSTTSGAakrKAKIPKRWTSNKNARLDTESSFSRLAEAETKINTLEKQLEETE 135
                  6777777777777777777777666555444331112222233334444444478888999*************99765 PP

>> PF04394.9  Protein of unknown function, DUF536
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6      0.36   9.7e+02       6      17 ..      52      63 ..      50      70 .. 0.62
   2 ?   10.4   1.4   0.00013      0.36      28      44 ..     119     136 ..     116     137 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.36
    PF04394.9  6 ekkdkqieelqk 17
                 ++k+k +++ ++
  MMETSP0890-20130614|31882_1 52 AEKNKVQQKIDN 63
                 566666666543 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00013
    PF04394.9  28 qankkieeLenqLee.yk 44 
                  +a++ki++Le+qLee +k
  MMETSP0890-20130614|31882_1 119 EAETKINTLEKQLEEtEK 136
                  7899***********887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1014  (0.0741662); expected 273.4 (0.02)
Passed bias filter:                      531  (0.0388385); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:01.01
# Mc/sec: 336.91
//
Query:       MMETSP0890-20130614|31884_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   13.7   1.4      0.039   13.3   0.9    1.2  1  PF07780.7 Spb1 C-terminal domain


Domain annotation for each model (and alignments):
>> PF07780.7  Spb1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   2.8e-06     0.039     120     173 ..       8      62 ..       5      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-06
    PF07780.7 120 aEAkaR.kkkraekkleklkkkaeaiaededisekeKakeikkllkkakkkkkka 173
                   EAk R kk+ra++kl     +  +i +d +i+ +e+a++++  +++a+++ + +
  MMETSP0890-20130614|31884_1   8 DEAKSRaKKFRAQAKLYASLCQQTEIYDDPEIKAEERASSVRYFADQAERAFRAQ 62 
                  69****8999********************************9999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.46s 00:00:00.80 Elapsed: 00:00:01.32
# Mc/sec: 252.34
//
Query:       MMETSP0890-20130614|31881_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      129  (0.00943534); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.95
# Mc/sec: 920.71
//
Query:       MMETSP0890-20130614|31901_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:00.64
# Mc/sec: 801.28
//
Query:       MMETSP0890-20130614|31916_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       237  (0.0173347); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.60
# Mc/sec: 702.93
//
Query:       MMETSP0890-20130614|31940_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0079   15.4   0.0     0.0079   15.4   0.0    1.0  1  PF01869.15 BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> PF01869.15  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.8e-07    0.0079     111     167 ..       2      57 ..       1      84 [. 0.93

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.8e-07
   PF01869.15 111 dIgGtdskgiqidddGkvenfgmndrcaageGrylgiaadelnmglreldglaekst 167
                  +I+Gtd++ ++++ + ++ n g  d  aa + + l + a el++++ ++d l  ++ 
  MMETSP0890-20130614|31940_1   2 LIAGTDTRDVALR-RARPLNLGEPDSTAAATLSSLNMLAGELGQFIVMIDMLLSETC 57 
                  69***********.************************************9987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.55
# Mc/sec: 413.92
//
Query:       MMETSP0890-20130614|31947_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-12   46.3   0.1    9.1e-12   45.9   0.1    1.1  1  PF04134.7 Protein of unknown function, DUF393


Domain annotation for each model (and alignments):
>> PF04134.7  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   6.6e-16   9.1e-12       1      73 [.      35     103 ..      35     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 6.6e-16
    PF04134.7   1 llYDgqCplCakevaflrrldakerlrfvdiqsakdeellkeagidkdqllsvlhlvergevlsgsdAalelw 73 
                  l+YDg C+lC+++v+fl+++d  +rlrf++ q++++ +l ++a+i   +++ +++ ++++++l  +dA+l+++
  MMETSP0890-20130614|31947_1  35 LIYDGRCKLCDSWVSFLLNQDPGARLRFAASQTDAGIKLKQYAKI---EIDALVF-IGSDRALLNADAILACL 103
                  79***********************************97755555...5999999.8*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.55
# Mc/sec: 496.70
//
Query:       MMETSP0890-20130614|31943_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-33  114.5   8.1      7e-33  113.7   5.6    1.3  1  PF01545.16 Cation efflux family
     0.0089   15.7   0.7      0.021   14.4   0.5    1.7  1  PF06168.6  Protein of unknown function (DUF981)


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   5.6     1e-36     7e-33       2     248 ..      24     288 ..      23     301 .. 0.89

  Alignments for each domain:
  == domain 1    score: 113.7 bits;  conditional E-value: 1e-36
   PF01545.16   2 iialllnlllalvelivglltnSlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfille.sierliep.......heidapeialgvalisllvnlllalllrragrk...............sskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalreldgvlsvhdlhvwkvgsskilveihievdpsl 248
                  ++a++ n++++ ++++v++ ++S a+ a+a+hs +d  +++l+l+++r a+++pd++ p+G+g+  +l++lv+++ ++ l++ + l  s++ ++         +++ + e a++ + +s+l+  +++ +++r   +               +++r++++ av+l+  + ++g + + ++++++ +tg +l lDp+ + +++l++  +gl l+  +++ L+g++ d  +l+++es +r+++ +++vh+++   +g++ ++  +++e+d + 
  MMETSP0890-20130614|31943_1  24 VYAIYGNIIITTAKALVAMHSGSAAMAAEAVHSAADSMNQMLLLIGLRSATRSPDARAPYGYGKSIYLWSLVSALGTFWLGGGVSLYsSVKEIMVLssttisqAHTGGIECAAV-LGVSFLIDGFVLSKSIR---HllatkphdrsvfahlKQTRDPTVLAVLLEDVSACIGIIFAATGIAATRYTGIIL-LDPLSGAAVGLLLGSVGLALAAINARYLIGSAVDRPILEDIESLVRAHPAIEDVHSVQSNVIGPDAFSYKCEVEFDAHY 288
                  68999**********************************************************************988776655555388887777999995455555555444.99999999999999999...4455666777788888999********************************8887.****************************************************************999999999988765 PP

>> PF06168.6  Protein of unknown function (DUF981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.5   3.1e-06     0.021     124     181 ..     158     240 ..      85     248 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.1e-06
    PF06168.6 124 trep........................leallg.LyilvGLaallypvalaldrekkkkvllvlaalllilaallalligie 181
                  +++p                        ++a +g +++++G+aa  y  ++ ld+ ++++v l+l+ + l+laa+ a ++  +
  MMETSP0890-20130614|31943_1 158 ATKPhdrsvfahlkqtrdptvlavlledVSACIGiIFAATGIAATRYTGIILLDPLSGAAVGLLLGSVGLALAAINARYLIGS 240
                  555556666666666666677777777777777746***************************************99876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.42s 00:00:01.21 Elapsed: 00:00:00.70
# Mc/sec: 1516.55
//
Query:       MMETSP0890-20130614|31949_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       623  (0.0455676); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.88
# Mc/sec: 533.73
//
Query:       MMETSP0890-20130614|31959_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-12   46.9   0.3    2.7e-12   46.2   0.2    1.2  1  PF13393.1  Histidyl-tRNA synthetase
    4.8e-06   26.3   0.0    6.9e-06   25.8   0.0    1.2  1  PF03129.15 Anticodon binding domain


Domain annotation for each model (and alignments):
>> PF13393.1  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.2   3.9e-16   2.7e-12     232     304 ..       5      81 ..       2      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 3.9e-16
    PF13393.1 232 aldeleklaallealaeevrltlDlaelrgyeYytglvFaayaegvg.qalarGGrYdelgeaf..g.rarpAtGfs 304
                  al el+kl  l++a++  + l +D + +rg++YytglvF+ + ++ + +a+++GGrYd+l+ ++  + ++ pA+G  
  MMETSP0890-20130614|31959_1   5 ALVELRKLFDLARAHGFYDYLVFDATVVRGLAYYTGLVFEGFDRKGElRAICGGGRYDNLLTSMypKvDDLPAVGVG 81 
                  7889*********998899***********************9754426************9986523688999975 PP

>> PF03129.15  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     1e-09   6.9e-06      16      92 ..     128     207 ..     112     209 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1e-09
                  HHHHHHHHHHHC--.--EEE--SSS----HHHHHHH----EEEEE-HHHH..CTTEEEEEETTTTBEEEEETTTHHHHHH CS
   PF03129.15  16 dyakklaeeLreag.irvelddrsesigkklrradllgipfavvvGekel..ekgtvtvrdrdtgeqervsleelveklk 92 
                    a ++a+ Lr +   +v+l  + ++ ++++++ad+ g++f+ ++ ++e   +++ v ++d+++geq+++++++l++ ++
  MMETSP0890-20130614|31959_1 128 IAAASVAALLRTHTlANVDLVLEPKKAKWAFKHADRRGARFVAMLAPDEWfsQDNLVILKDLQSGEQNSIPFNQLADQVS 207
                  4577778888887756788888***************************97556*********************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 971.16
//
Query:       MMETSP0890-20130614|31964_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-18   64.6   0.0    6.7e-18   64.1   0.0    1.2  1  PF02269.11 Transcription initiation factor IID, 18kD subunit


Domain annotation for each model (and alignments):
>> PF02269.11  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   4.9e-22   6.7e-18       3      88 ..      14      98 ..      12     103 .. 0.95

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 4.9e-22
   PF02269.11  3 frkelqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkellkkak 88
                 ++k+l  m+y++Gd ++P +e+v+l e+lvr y+  l++qa  + +lr   k+  E +l ++   + K++R+kell ++e lkka+
  MMETSP0890-20130614|31964_1 14 LSKDLAVMMYGFGDSPQPKSESVDLTEALVRRYVESLITQALGIQNLR-GGKLDAECFLLAVSAQPTKFKRVKELLDMRENLKKAR 98
                 789********************************************9.679******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 593.56
//
Query:       MMETSP0890-20130614|31973_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.84
# Mc/sec: 382.28
//
Query:       MMETSP0890-20130614|31993_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       708  (0.0517847); expected 273.4 (0.02)
Passed bias filter:                      555  (0.0405939); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 303.29
//
Query:       MMETSP0890-20130614|32002_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-14   51.8  13.4     0.0002   20.8   0.0    4.4  4  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.4   2.2e-05       0.3       1      16 [.      41      57 ..      41      59 .. 0.92
   2 !   18.8   2.0   6.1e-08   0.00084       1      18 [.      64      81 ..      64      85 .. 0.93
   3 !   20.8   0.0   1.4e-08    0.0002       1      20 [.      87     106 ..      87     109 .. 0.91
   4 !    6.2   0.0   0.00059       8.1       1      10 [.     111     120 ..     111     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.2e-05
                 EE-EE.ETTEEE-EEEB CS
   PF02493.15  1 YeGeW.knGkrhGkGvy 16
                 Y+G    +G +hG+Gvy
  MMETSP0890-20130614|32002_1 41 YQGSMdEKGNPHGFGVY 57
                 8999999*********9 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 6.1e-08
                 EE-EEETTEEE-EEEB-- CS
   PF02493.15  1 YeGeWknGkrhGkGvytw 18
                 Y G++knG++hG+G +++
  MMETSP0890-20130614|32002_1 64 YRGNFKNGLFHGYGEMRY 81
                 99*************998 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 1.4e-08
                  EE-EEETTEEE-EEEB---- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpd 20 
                  Y+G+W++G  +G+G+y   d
  MMETSP0890-20130614|32002_1  87 YIGQWVDGVAEGNGHYLDTD 106
                  9***************8777 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.00059
                  EE-EEETTEE CS
   PF02493.15   1 YeGeWknGkr 10 
                  YeG++++G++
  MMETSP0890-20130614|32002_1 111 YEGNFSRGLP 120
                  ********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.66
# Mc/sec: 537.36
//
Query:       MMETSP0890-20130614|32003_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        8.5    5.9  11.4       0.39   10.3   3.0    2.0  2  PF02862.12 DDHD domain


Domain annotation for each model (and alignments):
>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   2.9e-05      0.39     129     190 ..      48     125 ..       4     135 .. 0.62
   2 ?    0.0   0.5      0.04   5.4e+02     101     124 ..     144     167 ..     126     182 .. 0.35

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.9e-05
   PF02862.12 129 slssedeeseeeseasklsqks.....................ksekkkeseeetkeeeeeakkekreelklralnsngriDY 190
                  ++++ +e+ ee+s ++                           ks ++++++e ++++ ++++++ r++    ++++++ri Y
  MMETSP0890-20130614|32003_1  48 RRENHEENHEEQSPIK-----RgskstpprtpptkikkttakqKSPSQQDNKEHESNTPTTMTRSGRRSFPALNWWTSQRIAY 125
                  2222222222222222.....02222355556667777777657778888888888899999999****************88 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.04
   PF02862.12 101 gkavkqsvesltsslsegiasslr 124
                  g+a k+s +s+++   + +  + +
  MMETSP0890-20130614|32003_1 144 GAANKESPASSGKRKLRKSSDTQK 167
                  333332222111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 617.65
//
Query:       MMETSP0890-20130614|32008_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   24.8   0.0    1.8e-05   24.2   0.0    1.5  1  PF13242.1 HAD-hyrolase-like
    8.1e-05   22.8   0.1     0.0004   20.5   0.0    1.9  1  PF13419.1 Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.6e-09   1.8e-05      19      52 ..     106     139 ..      67     164 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.6e-09
                  GGTTTEEEE---.HHHHHHHHH---EE------- CS
    PF13242.1  19 appsevvmiGDslatDieaAnaaGirsilVltGv 52 
                  + +++ v+iGDsl++D ++A +aG+r+i + t  
  MMETSP0890-20130614|32008_1 106 CSLKDLVHIGDSLHDDGLGALRAGARAIIIPTSR 139
                  347899***********************99954 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.9e-08    0.0004      65     175 ..       7     134 ..       2     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.9e-08
    PF13419.1  65 ealkeanlesrlelfpdvvellrrlkak...glklvilSngsaeavellleklgledlfdavftsddvgarKPdpeayekvlerl.................gvkpeeilfidDsl.edveaAraaGirtvh 175
                  ++++e   + +  lfp++++l+ +lk++   ++ +++l+ng+a+     l  + l d  d  + ++ vga KP+++++  v + l                  +  +++++i+Dsl +d   A  aG r++ 
  MMETSP0890-20130614|32008_1   7 AIIHERSVVAAHNLFPGALDLISALKKElghHVHIGALTNGNAKP----LPGHALADALDFWLQAQAVGAQKPRLASFLAVTSCLpgtglfyesspsslqhsACSLKDLVHIGDSLhDDGLGALRAGARAII 134
                  5566666667778************7335669*********9886....444455568899999*********************999999999999888888888899******98888999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      130  (0.00950848); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.91
# Mc/sec: 450.30
//
Query:       MMETSP0890-20130614|32013_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.4   6.8        1.2    8.9   0.0    4.9  4  PF13176.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.2  11.2      0.092   12.5   0.9    3.3  3  PF13424.1  Tetratricopeptide repeat
       0.12   12.1  11.4          2    8.2   0.6    3.8  3  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.04   1.8e+02       5      24 ..      79      99 ..      77     105 .. 0.85
   2 !    8.9   0.0   0.00026       1.2       5      23 ..     120     138 ..     118     152 .. 0.92
   3 !    4.8   0.1    0.0058        26      18      30 ..     174     186 ..     172     195 .. 0.58
   4 ?    2.0   0.0     0.043     2e+02       5      24 ..     201     220 ..     197     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.04
    PF13176.1  5 Larlysr.lgdyekAielyer 24
                 +a++y +    ye+A+e++ +
  MMETSP0890-20130614|32013_1 79 MAKAYAEgAAAYERAAEFHLK 99
                 688888888899****99976 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00026
    PF13176.1   5 LarlysrlgdyekAielye 23 
                  L+++++ + +ye Ai ++ 
  MMETSP0890-20130614|32013_1 120 LGDIHRCVKNYEAAIGYFA 138
                  9****************96 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0058
    PF13176.1  18 AielyeraLaltk 30 
                  Aie+y++a +l +
  MMETSP0890-20130614|32013_1 174 AIEIYKEAVELYE 186
                  6666666433333 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.043
    PF13176.1   5 LarlysrlgdyekAielyer 24 
                  +a+l   +gdye+A   +e+
  MMETSP0890-20130614|32013_1 201 IAVLSATVGDYETAMISFEA 220
                  67777889*****9866665 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.54   2.5e+03      15      34 ..      23      42 ..      21      48 .. 0.60
   2 ?   12.5   0.9     2e-05     0.092       6      69 ..      68     137 ..      63     139 .. 0.88
   3 ?    7.4   0.1   0.00081       3.7      22      65 ..     172     214 ..     168     220 .. 0.56

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.54
    PF13424.1 15 lrrlgdydeAlelyekalel 34
                 ++++++   + + ++ka el
  MMETSP0890-20130614|32013_1 23 HYQKKRMAASAQSLRKAKEL 42
                 44556666666666777766 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2e-05
    PF13424.1   6 tilnnlalvlrrlgdydeAlelyekalel.lrelgd.....dhpdtaralnnlanlylalgdydeAleyl 69 
                   + +  + ++ + + y e  + ye+a e  l++ g+      +   a a   l+++++  ++y++A+ y+
  MMETSP0890-20130614|32013_1  68 ECFDDAGKMYVMAKAYAEGAAAYERAAEFhLKHNGEfeagtSSVKAAEASQKLGDIHRCVKNYEAAIGYF 137
                  67788999*************************8887766578899999*****************9887 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00081
    PF13424.1  22 deAlelyekalellrelgddhpdta.ralnnlanlylalgdydeA 65 
                   +A+e+y++a+el++ + +  p+ a  +   +a l +  gdy+ A
  MMETSP0890-20130614|32013_1 172 TKAIEIYKEAVELYE-AEN-RPQAAtGCREKIAVLSATVGDYETA 214
                  467777777777753.222.2332213566666666666666666 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.6   0.00043         2       5      44 ..      32      86 ..      28     100 .. 0.87
   2 ?    3.2   0.3     0.015        70       5      35 ..     107     137 ..     104     161 .. 0.83
   3 ?    5.6   0.3    0.0029        13      20      36 ..     170     186 ..     146     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHTT...............-HHHHHHHHHHHHHHHHHHHHHCTT CS
   PF04212.13  5 AlelikkAveaDeag...............kyeeAlelYkeAlelLlqalkyepn 44
                 + ++++kA e + +g               kye+A e+  +A + ++ a +y  +
  MMETSP0890-20130614|32013_1 32 SAQSLRKAKELEAKGegclrkfsffgggnaKYEDASECFDDAGKMYVMAKAYAEG 86
                 568899999****9999999**************************999888744 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.015
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF04212.13   5 AlelikkAveaDeagkyeeAlelYkeAlelL 35 
                  + +++k A    + g+   ++++Y+ A++++
  MMETSP0890-20130614|32013_1 107 GTSSVKAAEASQKLGDIHRCVKNYEAAIGYF 137
                  55666666666779999999********998 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0029
                  -HHHHHHHHHHHHHHHH CS
   PF04212.13  20 kyeeAlelYkeAlelLl 36 
                     +A+e YkeA+el++
  MMETSP0890-20130614|32013_1 170 SSTKAIEIYKEAVELYE 186
                  5678*********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.41s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 932.50
//
Query:       MMETSP0890-20130614|32016_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-21   75.3   0.1    1.6e-06   27.6   0.0    5.8  6  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.055   7.6e+02      20      39 .]     152     171 ..     130     171 .. 0.75
   2 !   27.6   0.0   1.2e-10   1.6e-06       8      39 .]     212     244 ..     205     244 .. 0.92
   3 !    5.9   0.0   0.00081        11      13      35 ..     259     282 ..     256     286 .. 0.88
   4 !   18.4   0.1   9.5e-08    0.0013       5      39 .]     294     329 ..     290     329 .. 0.84
   5 !   14.1   0.0   2.1e-06     0.028       2      39 .]     335     371 ..     334     371 .. 0.92
   6 ?   -0.1   0.0     0.062   8.5e+02      21      39 .]     394     413 ..     386     413 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.055
                  ESSSTEEEEEETTSEEEEEE CS
   PF00400.27  20 spdgpllasgSrDgtirlWd 39 
                  +  g+++a g   + i +W+
  MMETSP0890-20130614|32016_1 152 DNAGSFVAVGTFENAIEIWN 171
                  33499**************7 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.2e-10
                  ESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   8 rgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                   gH ++V +++++     +lasgS+D t+++Wd
  MMETSP0890-20130614|32016_1 212 LGHVDAVMSLSWNRLsTGMLASGSADETVKIWD 244
                  69******************************9 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.00081
                  SEEEEEEESS.STEEEEEETTSEE CS
   PF00400.27  13 pVtcvafspd.gpllasgSrDgti 35 
                   V  ++++p   p la g++D+ +
  MMETSP0890-20130614|32016_1 259 KVQTIKWHPCeAPALAAGGDDRRL 282
                  6889*****************976 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 9.5e-08
                  EEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  ++++  ++ ++c+a++p  +++++++++Dg +  +d
  MMETSP0890-20130614|32016_1 294 SIFTTLNAEIECLAWHPKqPTHIVCSCDDGLVTCFD 329
                  556666789*********************997776 PP

  == domain 5    score: 14.1 bits;  conditional E-value: 2.1e-06
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +++ + + H+ +V ++a++ +  lla++S D+ ++l+d
  MMETSP0890-20130614|32016_1 335 QPLWSMQPHSESVPAIAYNEH-GLLATASNDKFVKLFD 371
                  57788899*************.**************98 PP

  == domain 6    score: -0.1 bits;  conditional E-value: 0.062
                  SS.STEEEEEETTSEEEEEE CS
   PF00400.27  21 pd.gpllasgSrDgtirlWd 39 
                  +  + lla +++  t+ lW+
  MMETSP0890-20130614|32016_1 394 DGnPYLLAAAGSKATLALWN 413
                  55577899999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.41s 00:00:01.19 Elapsed: 00:00:00.65
# Mc/sec: 1651.64
//
Query:       MMETSP0890-20130614|32026_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   20.8   1.0    0.00031   20.1   0.7    1.4  1  PF05181.7 XPA protein C-terminus


Domain annotation for each model (and alignments):
>> PF05181.7  XPA protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.7   2.3e-08   0.00031       3      50 ..      76     119 ..      74     121 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.3e-08
    PF05181.7   3 ysLlTkTeakedYLLtdpeLkdrelLkflekkNPHkstwsdMkLylrl 50 
                  + LlT T+a ++YLL    Lk   +L+ ++k NP     + MkLylr+
  MMETSP0890-20130614|32026_1  76 FELLTATDATKEYLLPKSTLK---VLPSMNKLNPRG-FAHPMKLYLRM 119
                  78**************99886...89999*****87.4478*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       983  (0.0718988); expected 273.4 (0.02)
Passed bias filter:                      654  (0.047835); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.43s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 503.54
//
Query:       MMETSP0890-20130614|32031_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.91
# Mc/sec: 160.63
//
Query:       MMETSP0890-20130614|32035_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   12.8   0.3       0.12   12.2   0.2    1.3  1  PF12089.3 Transmembrane domain of unknown function (DUF3566)


Domain annotation for each model (and alignments):
>> PF12089.3  Transmembrane domain of unknown function (DUF3566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   8.7e-06      0.12      51     104 ..      72     125 ..      35     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.7e-06
    PF12089.3  51 qvnelvkdvveeeeasdlesllslgrvlslaalvgvinvvlltaLatlaallYN 104
                   v ++ ++ ++++++++ ++ll+  +  +la+ ++ i +++l +L  l+a++Y 
  MMETSP0890-20130614|32035_1  72 LVRDAARKRAKRTSNAQAQHLLTERNNAKLATFITQIGIIILIVLMLLGAVIYA 125
                  34555555556666669999*********************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.42s 00:00:01.06 Elapsed: 00:00:00.96
# Mc/sec: 686.46
//
Query:       MMETSP0890-20130614|32041_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-21   75.5   3.7    7.3e-11   41.5   0.2    4.1  4  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0006       8.2       7      34 ..       5      32 ..       1      38 [. 0.84
   2 !   10.1   0.0   3.2e-05      0.43      61      93 ..      42      74 ..      40      77 .. 0.92
   3 !   16.4   0.0   3.6e-07    0.0049       4      83 ..      82     154 ..      79     166 .. 0.87
   4 !   41.5   0.2   5.4e-15   7.3e-11       4      81 ..     171     246 ..     168     249 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0006
                 HHHH----HHHCCHHHCHHHHHHHHHHH CS
   PF00153.22  7 ksllaGaiAgaiaalvttPldvvKtrlq 34
                 ++ + G++Agai+++  +P+   K   q
  MMETSP0890-20130614|32041_1  5 ENGMLGILAGAIEVTSLQPILYWKNAAQ 32
                 56789**************988777666 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.2e-05
                 GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22 61 rglyrGllpnllrvvpaaaikfvtyetlkklls 93
                 r+lyrGll+++  +++ ++++f +  ++ kl++
  MMETSP0890-20130614|32041_1 42 RKLYRGLLTSVANMAILTGLQFPLTGMCTKLIT 74
                 79**********************999999876 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 3.6e-07
                  HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHH CS
   PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfv 83 
                  + ++++ a++++ga++ l++ P++++ ++ q       +   +i++   +i+ + G+ +l rG+ +++ r++++++  ++
  MMETSP0890-20130614|32041_1  82 NSAETISAALMGGALSGLACGPMELIMIQQQ-------RFGGSIIHSPIRIISNFGLFSLSRGTFMSCGREALYTGGVLG 154
                  55678899******************99999.......66689****************************999876655 PP

  == domain 4    score: 41.5 bits;  conditional E-value: 5.4e-15
                  HHHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHH CS
   PF00153.22   4 svlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaik 81 
                  + ++++ a+++Ag+iaa++ +P+d++K  +q   + + +kyk+ +++ +++y e Gi  ++ G+  +  r+++a ai+
  MMETSP0890-20130614|32041_1 171 GNIAKMGASIAAGTIAATFSHPMDTIKSCVQ--GDLEYTKYKSQIQTAQTLYAEGGIGRFFTGWAYRTGRMILAVAIM 246
                  56778899***********************..99999**********************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.45s 00:00:00.99 Elapsed: 00:00:00.61
# Mc/sec: 1037.11
//
Query:       MMETSP0890-20130614|32049_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 235.28
//
Query:       MMETSP0890-20130614|32079_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.85
# Mc/sec: 372.14
//
Query:       MMETSP0890-20130614|32084_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-32  110.3   2.3    4.9e-32  109.9   1.6    1.2  1  PF10507.4  Protein of unknown function (DUF2453)
     0.0008   18.4   0.0     0.0015   17.6   0.0    1.5  1  PF00036.27 EF hand
  ------ inclusion threshold ------
      0.018   14.2   0.0      0.037   13.2   0.0    1.5  1  PF13202.1  EF hand
       0.04   13.7   0.0       0.17   11.7   0.0    2.0  2  PF13405.1  EF-hand domain
      0.097   12.7   0.0       0.17   11.9   0.0    1.3  1  PF13499.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF10507.4  Protein of unknown function (DUF2453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   1.6   1.8e-35   4.9e-32       2     110 ..     106     213 ..     105     214 .. 0.97

  Alignments for each domain:
  == domain 1    score: 109.9 bits;  conditional E-value: 1.8e-35
    PF10507.4   2 vaavPfigFGflDnaimilaGdaidkslgvvlglstlaaAalGnvvsdvlGiqlaglieklvqrlglkepkltkkqlkskatrlatkvgsvlGilvGllLGmlpLlfld 110
                   +++Pfi FGf+Dnaim+laGdaid+++gv +gls l +AalGn+++d +G   +g+i +l++   lk p+lt++q++sk +rl+++v+s+lGi++G+ LG lpLlf+ 
  MMETSP0890-20130614|32084_1 106 LSSIPFIVFGFFDNAIMLLAGDAIDAAVGVKFGLSALGCAALGNIIADATGQLSGGTIASLLRP-VLKDPRLTPHQQASKVARLTHTVASTLGIMFGCSLGCLPLLFIG 213
                  589********************************************************99996.69****************************************96 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.4e-07    0.0015       1      28 [.      51      78 ..      51      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.4e-07
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkk 28
                 +lk++  e+DkD+dG +++ E+ +++k+
  MMETSP0890-20130614|32084_1 51 DLKQVLLEADKDKDGALDLHEMTSYWKR 78
                 5899999***************998875 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.037       2      21 ..      53      72 ..      52      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
                 HHHHHHH--S----B-HHHH CS
    PF13202.1  2 kdtFrafDlNgDGkIsreEL 21
                 k+++ ++D+++DG ++  E+
  MMETSP0890-20130614|32084_1 53 KQVLLEADKDKDGALDLHEM 72
                 6677789**********997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.1e-05      0.17       3      27 ..      53      77 ..      51      85 .. 0.81
   2 ?   -2.4   0.0         2   5.6e+03      12      27 ..     153     168 ..     152     171 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-05
                 H---GCC-------B---HHHHHHH CS
    PF13405.1  3 reaFklfDkdgdGkidaeELrdaLr 27
                 +++    Dkd+dG +d++E+ +  +
  MMETSP0890-20130614|32084_1 53 KQVLLEADKDKDGALDLHEMTSYWK 77
                 5566678************988766 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2
                  -----B---HHHHHHH CS
    PF13405.1  12 dgdGkidaeELrdaLr 27 
                  d +G+++   + ++Lr
  MMETSP0890-20130614|32084_1 153 DATGQLSGGTIASLLR 168
                  8899999877777766 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.2e-05      0.17       2      30 ..      52      80 ..      51     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.2e-05
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlg 30
                 lk++  + Dkd+dg ld  e++ + k++g
  MMETSP0890-20130614|32084_1 52 LKQVLLEADKDKDGALDLHEMTSYWKRHG 80
                 67778899999999999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.41s 00:00:00.86 Elapsed: 00:00:00.89
# Mc/sec: 621.98
//
Query:       MMETSP0890-20130614|32090_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   40.4   0.0    3.5e-10   39.6   0.0    1.3  1  PF02622.10 Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.5e-14   3.5e-10      13     154 ..     141     295 ..     136     301 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 2.5e-14
   PF02622.10  13 VvllcehseegalGlilNrpleitlkelleelekealselkeqsvllGGPveqer...............gfvlhsaekeaeesslevs.eglllttsldilealiasg.egpeklllflGYagWgagQLesEieegsWlvvpadselifdtppee..lWe 154
                  V+ll++  e+   Gl+l r + + + ++ ++l++   s +  q++ +GGP  +++               +++lh  ++   ++s +++ +gl+++++ ++ + l+++g ++p +++lf+   +W+    ++E++ g+W +v+a++eli+++ p+   +W+
  MMETSP0890-20130614|32090_1 141 VILLLDRGESVVSGLMLGRRSGYLMGDF-KQLDT---SGFLTQPLWIGGPSAPDNlelctvgaisdestgILALHPYQSI--TNSQPLTpDGLYVGGDWNTAKLLVDRGmANPFRFRLFAQATSWSTTDFDNELKLGAWRLVDASTELILKDRPRGadIWA 295
                  99*******************9999885.67773...34899*********99997766655555555555555555333..555554449******************999**************************************99765433665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.56s 00:00:00.95 Elapsed: 00:00:00.82
# Mc/sec: 897.17
//
Query:       MMETSP0890-20130614|32101_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-53  179.0   0.0    1.7e-52  178.0   0.0    1.5  1  PF00069.20 Protein kinase domain
    3.5e-21   75.3   0.0    4.2e-21   75.1   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.0   0.0   2.5e-56   1.7e-52       8     260 .]       2     316 ..       1     316 [. 0.96

  Alignments for each domain:
  == domain 1    score: 178.0 bits;  conditional E-value: 2.5e-56
                  E----EEEEEEEETTCCEEEEEEEEEGGGHHHHH.HHHHHHHHHHHHHHH-TTB--EEEEEEE.........STEEEEEEE--SC-EHHHHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE.CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH..................................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   8 GsGsfGkVykakkkktgkkvAvKilkkeeekskk.ektavrElkilkklsHpnivkllevfee.........kdelylvleyveggdlfdllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl.eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks..................................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  G+G+ G V +++++ +g  vA+K ++++ ++ +  +++ +rE+k+l++l H+++v++l+v ++         ++++ +v+e++ + dl  +l   k   l ++eik +++ +l+gl++lH n ++HrD+Kp+N+L++ +g l++aDFG ++ l  +++++l+  ++t +Y+APE+l +a++y+ ++D W++G++++el+  +++f+ +s+  ql+ i +i +++++ ++p  s  +                                                  ++l +l++  l  dp++R +++++l++p++
  MMETSP0890-20130614|32101_1   2 GKGRWGLVHRGIREIDGLPVAIKDVQYDVNDYEGlSIQIIREIKMLRNLCHEYVVSMLDVERRknglgeeknNQTISMVFELLAT-DLEVILYhdKTHVLGYREIKGFVSMMLQGLDFLHCNFVLHRDIKPANLLVSTSGILRLADFGYSRYLpDTDNGQLSYGCCTLWYRAPELLFGATQYSFSIDNWAAGCVIAELALVRPLFQASSNIGQLASIFRITGTPNDLSWPGVSMLKkfihfkpknsvsllqllqdfdqdrqsttspnkpnlnslndenenttagtsTTLAHLVSLFLINDPKRRQSCADALRSPFF 316
                  99*************************97776651556667******************************999999******88.99988887677788***************************************************99999**************************************************************************9977669*****************************************************************************98 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   6.2e-25   4.2e-21       8     200 ..       2     200 ..       1     255 [. 0.85

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 6.2e-25
                  -------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHHHHHHHHHT-BTTB--BEEEBE.......SSSS....EEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHT CS
   PF07714.12   8 GeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefleeakimkklkhpnivkllgvct.......keep....llivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEift 200
                  G+G++G V++g+ +     + + Va+K ++ + ++ e  + ++++e+k++++l h+ +v++l v         +  +    + +v+e+++  dL+ +L + +++ l ++++  f+  + +G+++L+ + ++Hrd+   N L++++ + +++DfG +r + ++d+  + + + + + + apE+l+  + ++   D W+ G+++ E++ 
  MMETSP0890-20130614|32101_1   2 GKGRWGLVHRGIRE----IDGLPVAIKDVQYDVNDYEglSIQIIREIKMLRNLCHEYVVSMLDVERrknglgeE--KnnqtISMVFELLAT-DLEVILYHDKTHVLGYREIKGFVSMMLQGLDFLHCNFVLHRDIKPANLLVSTSGILRLADFGYSRYLPDTDNG-QLSYGCCTLWYRAPELLFGATqYSFSIDNWAAGCVIAELAL 200
                  99**********99....889********8877766656899********************999865555531..1456799*****975.9*****9999*********************************************************444443.444455555556****987554****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.53s 00:00:01.03 Elapsed: 00:00:00.75
# Mc/sec: 1044.81
//
Query:       MMETSP0890-20130614|32128_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   25.0   0.0      3e-05   24.0   0.0    1.5  1  PF13417.1  Glutathione S-transferase, N-terminal domain
    0.00012   21.7   0.4    0.00037   20.1   0.0    2.0  2  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.043   13.7   0.0    1.6  1  PF13409.1  Glutathione S-transferase, N-terminal domain
      0.025   14.4   0.0      0.056   13.3   0.0    1.6  1  PF00043.20 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.7e-09     3e-05      32      74 ..       5      47 ..       2      48 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 8.7e-09
                 TTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHHHH---T CS
    PF13417.1 32 gkkrpellalnpkgkvPvLeddgevltdSlvIieyLeerfpgp 74
                 g k++++l + p g +P++e dg+v+t+Sl+I+   +++f+gp
  MMETSP0890-20130614|32128_1  5 GIKSQDFLNKVPGGFLPAIELDGNVYTESLDIMVMVDDTFNGP 47
                 567899**********************************997 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.1e-07   0.00037       8      69 .]      90     162 ..      59     162 .. 0.81
   2 ?   -1.8   0.1      0.77   2.6e+03       6      25 ..     286     305 ..     274     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.1e-07
                  GGGTT-THGGG------SS.....----.---HHHHHHHHHHHHH..HHHH---....---TT----HHHHHH CS
    PF13410.1   8 raqlraaLdaleahLadgp....fllGd.rpslaDialapflvrl..daagpgl....direayPnlrawler 69 
                  ++++++ L ++e++L+ g+    f++G   p+++D  ++ +l r+   +a+++        ++yPn++a++++
  MMETSP0890-20130614|32128_1  90 KRAFERDLHVVEKELERGGkdkpFFMGQsDPGIVDMQYFSHLERIfaSVAYWKGecirGDYKKYPNINAFFDA 162
                  57889999999999995555555999999*************99844444776655565569*******9986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.77
                  --GGGTT-THGGG------S CS
    PF13410.1   6 raraqlraaLdaleahLadg 25 
                  +a+ +++aaL+ +  +Lad+
  MMETSP0890-20130614|32128_1 286 QALSDVEAALSIVAHILADK 305
                  68888999999999999987 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.043      33      69 ..       7      42 ..       1      43 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHH------SEEE.----EEESHHHHHHHHHH CS
    PF13409.1 33 kseellalsprgtVPvLwdkdgtvineSseIlrylne 69
                 ks+++l+  p g +P++++ dg+v++eS++I+ + ++
  MMETSP0890-20130614|32128_1  7 KSQDFLNKVPGGFLPAIEL-DGNVYTESLDIMVMVDD 42
                 678999************7.99**********99886 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.6e-05     0.056      33      95 .]      93     167 ..      88     167 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
                  HHHHHHHHHHHHH....TSSSSSSSS.-BHHHHHHHHHHH....HHHHHTTTTT...HTT-HHHHHHHHHHHHSH CS
   PF00043.20  33 vlevlealeeels....gkkylvGdk.ltlADialfpale....wlqrldgnfl...eeefPklkawlkriaarp 95 
                    + l ++e+el+    +k +++G + ++++D+  f  le     ++  +g++     +++P++ a+++ ++ rp
  MMETSP0890-20130614|32128_1  93 FERDLHVVEKELErggkDKPFFMGQSdPGIVDMQYFSHLErifaSVAYWKGECIrgdYKKYPNINAFFDALEKRP 167
                  556677888888888889*****9644******99998885444566666666699***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.94
# Mc/sec: 943.25
//
Query:       MMETSP0890-20130614|32135_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 257.26
//
Query:       MMETSP0890-20130614|32144_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-12   45.6   0.0    8.5e-12   45.0   0.0    1.3  1  PF11523.3 Protein of unknown function (DUF3223)


Domain annotation for each model (and alignments):
>> PF11523.3  Protein of unknown function (DUF3223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   6.2e-16   8.5e-12      19      74 ..      75     131 ..      58     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 6.2e-16
                  .--HHHHHHHTSTTHHHH------EEEEEES---...-EEEEEE-----EEE--GGG CS
    PF11523.3  19 ekillealleyHpkkeeKigaGidsievrkhpege.ksrCFfvvrkDgteeDFSyrk 74 
                  + ++l a+l  Hp++++Kig Gi+ + vr++   + +  C +v r Dg+eeDFS+ k
  MMETSP0890-20130614|32144_1  75 DVTVLLAVLRNHPRAAAKIGDGIARLFVRRNIVDGqDVCCCYVERVDGSEEDFSILK 131
                  4899******************977777776666659*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 768.49
//
Query:       MMETSP0890-20130614|32142_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   60.1   0.0    1.8e-15   56.6   0.0    2.2  1  PF00270.24 DEAD/DEAH box helicase
    2.2e-09   36.9   0.1    9.1e-09   34.9   0.1    2.0  2  PF00271.26 Helicase conserved C-terminal domain
    0.00017   20.8   1.0    0.00039   19.7   0.7    1.6  1  PF02151.14 UvrB/uvrC motif
     0.0074   16.0   0.1      0.037   13.7   0.1    2.1  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.059   13.3   0.2        5.5    7.0   0.0    2.8  2  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   6.7e-19   1.8e-15       1     168 [.     102     361 ..     102     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 6.7e-19
                  -HHHHHHHHHHHSS....-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTS...............................................EEEEEESSHHHHHHHHHHHHHHTTT...........SS................................EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHH....CCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T.H CS
                  xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................xxxxxxxxxxxxxxxxxxxxxxxxx...........xxx...............................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
   PF00270.24   1 tpiQaeaiplilgg....gdvlvaaeTGsGKTlaflipvlqilletlkkttik...............................................kalivaPtreLaeqtlnnlkkfkky...........pkl...............................rvlliiggvalardqlsvl.dngvdivvgTpgrlddlvst....gkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp.k 168
                  tpiQa++++++ g      dvl+ ++TGsGKTla+  + l ++ + l++ + +                                                +l+++P+r+La q+++ + ++              +                                 rv+  +++++++ d+ ++   + +di+v+  ++l++ +++      l n s++r+l +DEad + +     q  +i+++++ +++ + i++ ATl+  
  MMETSP0890-20130614|32142_1 102 TPIQARTLREAFGSatqaTDVLIRSPTGSGKTLAYTTASLAAISNDLED-R-ErlttlsvanaglltpaaamealspalrtsartsvtriaslaaprgppLFLVLTPSRALAVQIATAIFTLVGGnarstyfpgdkK-SlfsytgpkgvrvcclasdadadravyaartrRVANQYENQDTDSDEIRFDdLHDCDILVADSDTLINSLHAatahAPLfNASRLRVLAIDEADAYAK-----QAAEIIKLIQCPQSTRRILVGATLNtP 361
                  799988888777433444*************************997762.2.23577889999********************************************************666666555444544441.0455555555655555555555555555555444444555555544444448566**********9999988776666678899**************.....67778888888888999******9844 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         1   2.8e+03      10      33 ..     141     164 ..     134     186 .. 0.84
   2 !   34.9   0.1   3.3e-12   9.1e-09      35      78 .]     522     564 ..     498     564 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1
                  EEEE-TTS-HHHHHHHHHHHHTTT CS
   PF00271.26  10 vailhgelpqnereeileqfnagk 33 
                   a++  +l+ +er+ +l+  nag 
  MMETSP0890-20130614|32142_1 141 LAAISNDLEDRERLTTLSVANAGL 164
                  56778899999****999999986 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 3.3e-12
                  SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26  35 kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                   vlv++  a+rG+d+p+v++V+++++++s  +y++++GRtgR+g
  MMETSP0890-20130614|32142_1 522 TVLVTSANAARGLDFPQVTHVFILGVSTSI-EYAHMAGRTGRVG 564
                  79************************8775.7**********86 PP

>> PF02151.14  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.7   1.4e-07   0.00039       4      33 ..      42      71 ..      39      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-07
   PF02151.14  4 lkeLeeemeeAaeeedFEkAAklRDqinal 33
                 +++   ++++A+++ed+ kAA+l+ ++ al
  MMETSP0890-20130614|32142_1 42 INSVMTALNAAVAAEDYRKAAELKKRLDAL 71
                 6778889*******************9988 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.3e-05     0.037      15      70 ..     109     218 ..      99     360 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
   PF04851.10  15 llesiekedekkrglivmaTGtGKTlvaa...............................................sliarlar.............kflflvprkelleqaleef 70 
                  l+e++ ++++ + +li  +TG+GKTl ++                                               s                     fl+l p+++l  q   ++
  MMETSP0890-20130614|32142_1 109 LREAFGSATQATDVLIRSPTGSGKTLAYTtaslaaisndledrerlttlsvanaglltpaaamealspalrtsartS------VtriaslaaprgppLFLVLTPSRALAVQIATAI 218
                  3444445566799*************999666666655555555555555555555555544444444444433321......022223444666666666666666666666555 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.029        79      10      27 ..     125     142 ..     117     197 .. 0.68
   2 ?    7.0   0.0     0.002       5.5      73     124 ..     300     356 ..     258     362 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.029
    PF13401.1  10 tGesGvGKTtllrrlarq 27 
                    ++G+GKT+++      
  MMETSP0890-20130614|32142_1 125 RSPTGSGKTLAYTTASLA 142
                  5699*******9887665 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.002
    PF13401.1  73 eellealqealrrrrt......rlliiDEaqrLseealeelrsllddetgvklvlvGt 124
                  ++l++ l+ a +++        r+l iDEa+   ++a e ++ +     ++  +lvG 
  MMETSP0890-20130614|32142_1 300 DTLINSLHAATAHAPLfnasrlRVLAIDEADAYAKQAAEIIKLIQC-PQSTRRILVGA 356
                  55555555555555557777789*********99999999988877.88888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:00.72
# Mc/sec: 2163.38
//
Query:       MMETSP0890-20130614|32153_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       108  (0.00789936); expected 273.4 (0.02)
Passed bias filter:                      102  (0.0074605); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 226.32
//
Query:       MMETSP0890-20130614|32155_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-21   75.3   2.5    3.2e-21   74.6   1.7    1.3  1  PF00957.16 Synaptobrevin
    0.00025   20.3   1.2    0.00038   19.7   0.8    1.3  1  PF11157.3  Protein of unknown function (DUF2937)
  ------ inclusion threshold ------
       0.05   12.0   0.6      0.071   11.5   0.4    1.2  1  PF11853.3  Protein of unknown function (DUF3373)
       0.13   12.0   2.2       0.26   10.9   1.1    1.8  2  PF07439.6  Protein of unknown function (DUF1515)
        0.5    9.9   5.0        0.4   10.2   0.6    2.4  2  PF05064.8  Nsp1-like C-terminal region
       0.76    9.6   3.6        2.9    7.8   0.1    2.5  2  PF04728.8  Repeated sequence found in lipoprotein LPP


Domain annotation for each model (and alignments):
>> PF00957.16  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   1.7   1.4e-24   3.2e-21       2      87 ..     210     295 ..     209     297 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 1.4e-24
   PF00957.16   2 ndklskikaevdevkdimkeNidkvlergekldeLvdkteaLqesaqqFkkqarklkrkmwwknmklliililvvlililiiiivi 87 
                  n  l+++ ++v+ev+ im++N++ +l+rgek+d+L+ k+++L+e +q+Fkkqarklkr  +++++k+ ++++ +v + + i i++i
  MMETSP0890-20130614|32155_1 210 NAALQRVANQVEEVRAIMERNVEMILDRGEKIDQLNAKSDQLSEATQAFKKQARKLKRWHLMNQVKWGVAVGTLVTASVAIPIAMI 295
                  67899***********************************************************************9999988776 PP

>> PF11157.3  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.8   1.7e-07   0.00038      40     135 ..     201     296 ..     196     298 .] 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.7e-07
    PF11157.3  40 krsvaefqatAk.affggdlealiahyrqssdpvvraraesmqalvaRyaaLesalaalaqaspferllvllraadreiaeetwsafepavpLtpeg 135
                  +r++a+ +  A+ +   +++e++ a ++++ + ++ +r+e++++l a+ ++L++a +a++++    + ++l+++ ++ +a  t+   + a+p+ + +
  MMETSP0890-20130614|32155_1 201 EREIAQANSNAAlQRVANQVEEVRAIMERNVE-MILDRGEKIDQLNAKSDQLSEATQAFKKQARKLKRWHLMNQVKWGVAVGTLVTASVAIPIAMIA 296
                  56666666555425558899999999999999.***************************************************9999999988766 PP

>> PF11853.3  Protein of unknown function (DUF3373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   3.1e-05     0.071      28      70 ..     236     278 ..     213     287 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.1e-05
    PF11853.3  28 dklqkiekLkkeleelkeqlkdlkkkvekiekksagdrlkisg 70 
                  d+  ki++L+++ ++l+e +++ kk+ +k++++ + +++k+++
  MMETSP0890-20130614|32155_1 236 DRGEKIDQLNAKSDQLSEATQAFKKQARKLKRWHLMNQVKWGV 278
                  4445*************************************98 PP

>> PF07439.6  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   2.7e+03      15      40 ..      84     109 ..      76     146 .. 0.62
   2 ?   10.9   1.1   0.00012      0.26      19      87 ..     208     279 ..     192     297 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.2
    PF07439.6  15 aevkelredlkrsedrsdasrakmyr 40 
                  ++  e+ +++  se  ++ +r   +r
  MMETSP0890-20130614|32155_1  84 RDAAEMEKNIVLSERYAALGRKIATR 109
                  66777778888888888777765554 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00012
    PF07439.6  19 elredlkrsedrsdasrakmyrkmdelver...vtalegsvvklkaditsvkevtedvkkwklmGlGalGvi 87 
                  +   +l+r  ++ +  ra m r+++ +++r   +  l++   +l +   + k+ + ++k+w lm     Gv 
  MMETSP0890-20130614|32155_1 208 NSNAALQRVANQVEEVRAIMERNVEMILDRgekIDQLNAKSDQLSEATQAFKKQARKLKRWHLMNQVKWGVA 279
                  34567889999999*********9998865222778888899999999****************98887774 PP

>> PF05064.8  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.17   3.8e+02      67      96 ..     199     228 ..     196     243 .. 0.68
   2 ?   10.2   0.6   0.00018       0.4      25      52 ..     244     271 ..     235     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.17
    PF05064.8  67 vvkaeqeqnkldqeLdfvesqqdeLeslLd 96 
                  v++ e +q++ +  L+ v +q +e  ++++
  MMETSP0890-20130614|32155_1 199 VLEREIAQANSNAALQRVANQVEEVRAIME 228
                  666677777777777777777777766654 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00018
    PF05064.8  25 inkWateLeeqekeFeeqakkvneWDrl 52 
                  +n  + +L+e ++ F++qa k + W  +
  MMETSP0890-20130614|32155_1 244 LNAKSDQLSEATQAFKKQARKLKRWHLM 271
                  466689*******************754 PP

>> PF04728.8  Repeated sequence found in lipoprotein LPP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4     0.077   1.8e+02       3       7 ..     240     244 ..     240     244 .. 0.95
   2 ?    7.8   0.1    0.0013       2.9       1       8 [.     245     252 ..     245     253 .. 0.97

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.077
    PF04728.8   3 KvDQL 7  
                  K+DQL
  MMETSP0890-20130614|32155_1 240 KIDQL 244
                  9***9 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0013
    PF04728.8   1 NAKvDQLS 8  
                  NAK DQLS
  MMETSP0890-20130614|32155_1 245 NAKSDQLS 252
                  *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1186  (0.0867466); expected 273.4 (0.02)
Passed bias filter:                      647  (0.047323); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.44s 00:00:01.19 Elapsed: 00:00:01.02
# Mc/sec: 700.11
//
Query:       MMETSP0890-20130614|32161_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-51  174.0   0.9    2.2e-51  173.7   0.6    1.1  1  PF01625.16 Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PF01625.16  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   0.6   1.6e-55   2.2e-51       1     150 [.     149     300 ..     149     306 .. 0.95

  Alignments for each domain:
  == domain 1    score: 173.7 bits;  conditional E-value: 1.6e-55
   PF01625.16   1 ekavlaggCfWgveavfeklkGVisvevGYaggevenptYeevcsgktghaEaveveydpekvsyeellevffei..hdptqlnrqgndigtqYrsaifytdeeqkkeaeelieklqkevkskkivteiepletFypaeeyhqdYleknpkr 150
                  ek+++++gCfWg e   ++ +GV+ + vGYa+g++enptY++vcsg+tgh+Eav+v+ydp+ v++++++++f+     + + lnr gnd+gtqYr++i+y+++eq+++a+++ e+ q+++ +++ivte+epl+ +y ae+yhq+Yl+k  ++
  MMETSP0890-20130614|32161_1 149 EKVTFGAGCFWGFELACQREPGVVATSVGYAQGQTENPTYQDVCSGSTGHTEAVQVTYDPSLVQFDRICTLFWDRlgENRFALNRVGNDMGTQYRHGIYYHTDEQAAIAKASFETEQAKHPDRPIVTELEPLSVYYIAEDYHQQYLQKGGQS 300
                  689**********************************************************************9944578899****************************************************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:01.07
# Mc/sec: 703.23
//
Query:       MMETSP0890-20130614|32173_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.89
# Mc/sec: 834.69
//
Query:       MMETSP0890-20130614|32179_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-23   82.6   0.0    2.5e-23   82.1   0.0    1.2  1  PF01596.12 O-methyltransferase
    3.5e-12   46.9   0.0    5.6e-12   46.3   0.0    1.3  1  PF13578.1  Methyltransferase domain
    3.8e-10   40.2   0.0    6.5e-10   39.4   0.0    1.3  1  PF12847.2  Methyltransferase domain
    0.00012   21.5   0.0    0.00016   21.1   0.0    1.2  1  PF13847.1  Methyltransferase domain
    0.00013   21.4   0.0    0.00018   21.0   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
     0.0014   18.5   0.1      0.003   17.4   0.0    1.6  2  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   14.3   0.0      0.023   13.6   0.0    1.4  1  PF08704.5  tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.3e-26   2.5e-23      25     160 ..      49     184 ..      32     193 .. 0.90

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 1.3e-26
   PF01596.12  25 samqvspeegqfLsllvklvgakkvleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqka.gvedkielilgdalkvLeelvedkkqgefDlifvDaDkssYknyyekll..eLvkvGgliaiDntLweG 160
                   +m++ p +g++L+      + ++vleiG+f Gys++  ++ lP dG++++i+ide +++ +++++qka g +d+i +  ++a +++++  e+   g fD + +D  k  Y +  + l+  +L+++G l++ Dn+L+ G
  MMETSP0890-20130614|32179_1  49 WMMNMGPTKGKILEEAF--KNKRRVLEIGTFLGYSTIRLSRILPPDGRLTTIEIDETNYQAARHIVQKAlGSDDRIRMLCANASAAIAQNDERL-GGPFDAVLMDHWKPLYATDLQALVqnKLLRPGALVIADNVLFPG 184
                  47889999999999765..5899*********************************************999****************9976665.599***************999998556***************99 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   2.9e-15   5.6e-12       1     105 [.      72     179 ..      72     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 2.9e-15
    PF13578.1   1 vEiGvysGvstlvllqalkrngagrlysvdpdpg.aeeaaalaee.agladrvrllkgdseealasla...dgsiDllfiDgghaaeavladleall..prlapggvvlldD 105
                  +EiG++ G+st+ l ++l   g  rl++++ d++  ++a+ ++++ +g +dr+r+l+++++ a+a+ +    g++D +++D  h++  ++ dl+al   ++l+pg++v+ d+
  MMETSP0890-20130614|32179_1  72 LEIGTFLGYSTIRLSRILPPDG--RLTTIEIDETnYQAARHIVQKaLGSDDRIRMLCANASAAIAQNDerlGGPFDAVLMD--HWKPLYATDLQALVqnKLLRPGALVIADN 179
                  7********************9..6999999997444456666668999***************988888889********..9999999999999533799*******998 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   3.3e-13   6.5e-10       3     108 ..      69     176 ..      67     180 .. 0.80

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 3.3e-13
    PF12847.2   3 krilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaks.ldleeriellqgda.keelsller....fDavllkgltldallaldeprrvlealp..kllkpggrlv 108
                  +r+l++G+  G++++ l+r l p+++++ ++++e +++ ar  +++ l+ ++ri+ l+++a    ++++er    fDavl+++     +         l+al   kll+pg  ++
  MMETSP0890-20130614|32179_1  69 RRVLEIGTFLGYSTIRLSRiLPPDGRLTTIEIDETNYQAARHIVQKaLGSDDRIRMLCANAsAAIAQNDERlggpFDAVLMDH-WKPLYATD------LQALVqnKLLRPGALVI 176
                  79******************99*******************9997769999*******88875555555556777******88.33323333......55555668888887665 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.1e-08   0.00016       3     108 ..      67     177 ..      65     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 8.1e-08
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqk.lgfe.nveFiqgdiee.lekl.le..esfDlvisnevl.naladpqkvlkeiervlkpggrliv 108
                   + +vl++G+  Gy +++l++ l p+++++ i+i+e+  + A+ ++qk lg + ++++  +++ + + ++      +fD v+ +       +d+q+ +++  ++l+pg  +i+
  MMETSP0890-20130614|32179_1  67 NKRRVLEIGTFLGYSTIRLSRILPPDGRLTTIEIDETNYQAARHIVQKaLGSDdRIRMLCANASAaIAQNdERlgGPFDAVLMDHWKpLYATDLQALVQN--KLLRPGALVIA 177
                  6789*****************99*********************887747888************99999888*********997666677888887777..77776655554 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.1e-08   0.00018      28     122 ..      19     116 ..       3     151 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.1e-08
                  S-GGGGS-GGGGGGTTSSS-EE----...-EE--HHHHHHHHHHTT..--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT CS
   PF01135.14  28 vdReefvpesfkekaYedaplsigyn...atiSaphmvalalelle..lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkld 122
                   d  +fv+e + +k   d++l + ++   +t+    m  +  + le  +k++ rvLe+G+  Gy t  l+r++ ++gr+ +ie  +  +++a++ ++k  
  MMETSP0890-20130614|32179_1  19 SDMLNFVEE-YGKKGDADSVL-LAMDkaaETSWMMNMGPTKGKILEeaFKNKRRVLEIGTFLGYSTIRLSRILPPDGRLTTIEIDETNYQAARHIVQKAL 116
                  555566666.65555556655.33331112223334444556778788999********************************99888888888887643 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06     0.003       2      77 ..      69     150 ..      68     190 .. 0.88
   2 ?   -2.4   0.0       2.2   4.2e+03      67      91 ..     232     256 ..     191     268 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
    PF13659.1   2 drvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlara.glaervrvrqgdlrdlaellra...gsfdlvvtn 77 
                  +rvl++g+  G+ ++ + + l  + +l+ +E+d+  +++a++ +++a g ++r+r  ++++ ++ ++ ++   g+fd+v+++
  MMETSP0890-20130614|32179_1  69 RRVLEIGTFLGYSTIRLSRILppDGRLTTIEIDETNYQAARHIVQKAlGSDDRIRMLCANASAAIAQNDErlgGPFDAVLMD 150
                  69****************************************99997577999*******988853333233399****997 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.2
    PF13659.1  67 ragsfdlvvtnpPygpragaraalr 91 
                  ++++fd  +  +P+  r+++++al 
  MMETSP0890-20130614|32179_1 232 SSKHFDTSLVPVPFEYRPETPDALS 256
                  4556777777777776666666665 PP

>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.023     101     188 ..      66     156 ..      60     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-05
    PF08704.5 101 kpGsvvvesGtGsgslshaiartvaPtGhlytfefheqRaekareeFrehel.sslvtvthrdvckeGF..deevenkaDavFLDlPaPwe 188
                  k+  +v+e Gt  g     ++r + P G+l t+e++e+ ++ ar+  ++    ++ + +   ++       de + +  Dav +D  +P  
  MMETSP0890-20130614|32179_1  66 KNKRRVLEIGTFLGYSTIRLSRILPPDGRLTTIEIDETNYQAARHIVQKALGsDDRIRMLCANASAAIAqnDERLGGPFDAVLMDHWKPLY 156
                  556799********9999*************************987766432244555555544432222356677777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:01.08
# Mc/sec: 599.09
//
Query:       MMETSP0890-20130614|32189_1  [L=864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  112.0   0.2    6.7e-32  110.2   0.0    2.1  2  PF08519.7  Replication factor RFC1 C terminal domain
    3.6e-12   46.4   0.0    2.4e-11   43.8   0.0    2.4  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    5.4e-12   45.1   5.8    2.6e-05   23.1   2.2    2.6  2  PF03215.10 Rad17 cell cycle checkpoint protein
    5.3e-10   39.1   0.0    2.6e-09   36.9   0.0    2.2  1  PF00533.21 BRCA1 C Terminus (BRCT) domain
    4.7e-08   33.0   0.2      2e-07   31.0   0.0    2.2  1  PF13401.1  AAA domain
    8.5e-07   28.5   0.7    2.1e-06   27.2   0.0    2.0  2  PF06144.8  DNA polymerase III, delta subunit
    1.5e-05   25.6   0.0    1.5e-05   25.6   0.0    2.8  2  PF13207.1  AAA domain
    2.6e-05   23.2   0.1    5.2e-05   22.2   0.0    1.5  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
    7.8e-05   22.4   0.0    0.00029   20.6   0.0    2.0  1  PF13173.1  AAA domain
    0.00014   20.9   0.0    0.00031   19.8   0.0    1.5  1  PF06414.7  Zeta toxin
    0.00017   21.2   0.0    0.00078   19.1   0.0    2.2  1  PF12738.2  twin BRCT domain
    0.00068   19.2   0.0     0.0017   17.9   0.0    1.7  1  PF13245.1  Part of AAA domain
      0.002   18.4   0.0      0.005   17.1   0.0    1.6  1  PF13191.1  AAA ATPase domain
     0.0021   17.8   0.0     0.0048   16.6   0.0    1.6  1  PF13671.1  AAA domain
     0.0028   17.8   0.0     0.0028   17.8   0.0    3.7  4  PF13238.1  AAA domain
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.029   13.9   0.0    1.7  1  PF07728.9  AAA domain (dynein-related subfamily)
      0.018   14.5   1.0       0.13   11.7   0.1    2.7  2  PF05729.7  NACHT domain
      0.027   14.3   0.0      0.061   13.1   0.0    1.6  1  PF13521.1  AAA domain
      0.029   13.9   0.0       0.14   11.7   0.0    2.1  2  PF03266.10 NTPase
      0.057   12.7   0.2       0.21   10.8   0.1    1.9  1  PF01695.12 IstB-like ATP binding protein
       0.58    9.3  25.4      0.011   15.0   9.8    2.7  2  PF04086.8  Signal recognition particle, alpha subunit, N-terminal


Domain annotation for each model (and alignments):
>> PF08519.7  Replication factor RFC1 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.2     6e+03      56      81 ..     498     523 ..     495     559 .. 0.69
   2 !  110.2   0.0     1e-34   6.7e-32       1     155 []     592     749 ..     592     749 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 9.2
    PF08519.7  56 anKnkRllqelqehlrlktssskeel 81 
                  ++K+kR ++ l+++ rlk   +k+++
  MMETSP0890-20130614|32189_1 498 TSKQKRKATYLAMKSRLKGGIEKDSI 523
                  78889999999998888884444444 PP

  == domain 2    score: 110.2 bits;  conditional E-value: 1e-34
    PF08519.7   1 isegDlvdrkirseqqWsLlpthavlssvlPsslvrgsltgerlnFpswLgknSkanKnkRllqelqehlrlktssskeelrldylplllekltkpLleegkd.......aieevielmdeYeltkedl.dnivelsklpnkenllkkidtkvKaaftrkynk 155
                  +s +Dlv+ kir+eq+W Ll t+a +  v  ++ ++g  +  ++nFp w+gknS++ Kn Rl +el+ hl +++s+sk+++rldyl+ ll+ + +p ++ +++       a   vi+ mdeY  +++d+ d++ +l    +k++++ k+dtk K++ft++yn+
  MMETSP0890-20130614|32189_1 592 LSISDLVEAKIRNEQNWGLLTTQAAM-IVKVGVDIQGFCM--NPNFPAWFGKNSTTTKNYRLTSELAFHLNHRCSASKQTIRLDYLEPLLSYISQPFQQLDANddtddnnACALVIDRMDEYGVSRDDFfDSMPDLL--VTKNSPIPKLDTKAKTKFTKTYNS 749
                  589*******************9987.6788888888844..6******************************************************99876667888889999**********************9..999*******************96 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   3.7e-14   2.4e-11       2     111 ..     302     405 ..     301     427 .. 0.68
   2 ?   -1.2   0.0       2.9   1.9e+03      46      74 ..     681     714 ..     657     727 .. 0.74

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 3.7e-14
                  EEE-------HHHHHHHHHHCTHEEEEEECCSSSSS.....T-HHHHHHHHHHHHHHHHTS..-SEEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SS CS
   PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellsk.....yvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr 111
                  ll+GppG+GKT+la+ +ake g+++le+++s+ +sk      +g + +     f ++ +k   ++  l++DE+d l +s+        +   ++L++ ++       +v +i+++n+
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAKEHGYDVLELNASDARSKkslteQLGGTLDCPTLKFGAINAKDmtTKRLLIMDEVDGLSGSD--------RGGSQELIRLIKIS-----RVPIICICND 405
                  8*********************************6655555333333333333333333336567***********9999........44556666655533.....2456666665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.9
                  HHHHHHHHHHTS.....-SEEEEEETGGGC-HHH CS
   PF00004.24  46 irelfkeakeka.....kpsilfiDEidalaksr 74 
                  i++ f+++ ++      + + l+iD +d+ + sr
  MMETSP0890-20130614|32189_1 681 ISQPFQQLDANDdtddnNACALVIDRMDEYGVSR 714
                  566666665555666655699*******999888 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   9.9e-08   6.4e-05       5      84 ..     242     336 ..     238     412 .. 0.79
   2 !   23.1   2.2     4e-08   2.6e-05     227     478 ..     436     707 ..     422     718 .. 0.63

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 9.9e-08
   PF03215.10   5 enelwvekykPekaeel....avHkkKikeveewlkadflesakkr............illltGPsGcgKsTtvkvlskelgikliewlnpvslke 84 
                  enelw ++ykP+  +++     v kk  + +e+w k +  ++ k++              ll+GP+G gK+T  + ++ke+g+++ e  n    ++
  MMETSP0890-20130614|32189_1 242 ENELWADRYKPKSTKDVlgngEVVKKLRSFLENWEKVHLGPESKRKklvpskenpnakAALLSGPPGIGKTTLAHLIAKEHGYDVLEL-NASDARS 336
                  8999********999994444466666666788887777666555445666666666678*************************997.6555454 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 4e-08
   PF03215.10 227 kklkeklkspkkqsvlelicqeaeGDlRsAinsLQlsss.....GenniRksG....davlslskskreetlslfhai..GkvlyakretdddserikkslkeleReellvepeeviemsslsgekfklglfeNyvdfc.........veiddavsvvdllSicDilsgdfetre.yll.revsttfatrsvlgsnk.kevyapre.wkvrklrnsfkvqafavnkplrekcesakakyilfyLpsl.slesqrlptldklsdimkveaqidviddi 478
                      +k   + + +  el++++++ D+R  +n LQ++s+     Ge+++  +G    ++    sk kr++t  +++    G +   +    +  +  k++l+++eR+     +e+      +      l ++eNy++            + + +v++++ lSi+D++      ++  +l     +++   +v  +    ++ +p+  +k +   + ++     +   l ++c + k+ + l yL+ l s  sq+ + ld+ +d+  ++a   vid++
  MMETSP0890-20130614|32189_1 436 VLIANKEGLDLEANAAELLAENCGNDIRQCLNALQMWSTelstqGEESMLTHGvtedNNDDNTSKQKRKATYLAMKSRlkGGIEKDSILRYTAFDGAKSILSDHERKSHNERIESFF----IDYGLTPLLIHENYINASnsvkncsieNKLERVVQASESLSISDLVEAKIRNEQnWGLlTTQAAMIVKVGVDIQGFcMNPNFPAWfGKNSTTTKNYRLT-SELAFHLNHRCSASKQTIRLDYLEPLlSYISQPFQQLDANDDTDDNNACALVIDRM 707
                  3444666666677778***********************999999999999999987444467999999966666543013332222222335556666777777776655555555....444444566666666544355553444445667788889999999888765442133303333333444443333213444444303334444444433.34445567788888888877777776699*************99999999999987 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   4.1e-12   2.6e-09       2      69 ..     109     184 ..     108     186 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 4.1e-12
                  CTTTTTTCEEEE..SSTTSSHHHHHHHHHHHCT-EEESSGSSSCSEEEEECC......BSHCHHHHHHHHTTCEEE CS
   PF00533.21   2 kpklFeglkfyi..gtfdnfnreeleelikelGGkvstevskktthlvvgep......elrtlkylaaialnipiv 69 
                  ++++++g++f++  +   +++r+++e+ ik+lGG+vs +vs kt++lvvg+        +++ k++ ai++++ i+
  MMETSP0890-20130614|32189_1 109 PELCLDGISFVLsgVLDEKPERSQVESYIKSLGGRVSGSVSGKTNFLVVGTLledgrsVEEGRKFKDAIERKVTII 184
                  6899*********55556789*******************************998888777788999999998886 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.1e-10     2e-07       4     109 ..     298     391 ..     293     409 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.1e-10
    PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLs....eealeelrs 109
                  a+ ++++G++G GKTtl+  +a+++          +v+  +a++  s+k+l ++l + l+ p+ +       + a++ +  ++++ lli DE++ Ls        e++r 
  MMETSP0890-20130614|32189_1 298 AKAALLSGPPGIGKTTLAHLIAKEH--------GYDVLELNASDARSKKSLTEQLGGTLDCPTLK-------FGAINAKDMTTKR-LLIMDEVDGLSgsdrGGSQELIRL 391
                  67899*******************9........*****************************999.......7777777777777.*********944454333333332 PP

>> PF06144.8  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         5   3.2e+03      58      92 ..      18      49 ..      16      50 .. 0.85
   2 !   27.2   0.0   3.2e-09   2.1e-06      76     169 ..     383     471 ..     347     474 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 5
                 SEEEEEE--...-----TTHHHHHHHH----BSSE CS
    PF06144.8 58 kkivilknpkllesklnekllkrLeellsnlpedv 92
                 + i++l++    e+ ++e + kr+  +++   +dv
  MMETSP0890-20130614|32189_1 18 REIIELDDD---EDDDDEIKEKRIKTTIDLAEDDV 49
                 678999999...99999999999999999888775 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 3.2e-09
                  THHHHHHHH----BSSEEEEEE--.---TTCCHHHHHTTTSEEEEE----TTTHHHHHHHHHHHTT--B-HHHHHHHHHSH---HHHHHHHHHH CS
    PF06144.8  76 kllkrLeellsnlpedvlLvieapgklderkkllkllkkkatvveaktlkeeelkkwiqkrakelglkiekealelLaekvennlsaiaqelek 169
                     ++L +l++     v ++ +++   d++ + +k l ++   +++k++ ++ + k i  +a+++gl++e  a+elLae+++n++++  ++l++
  MMETSP0890-20130614|32189_1 383 GGSQELIRLIKI--SRVPIICICN---DRQSNKVKGLANSCFDLRCKRPMKQTIAKRIVLIANKEGLDLEANAAELLAENCGNDIRQCLNALQM 471
                  555666666666..6667788888...66677******99999********************************************9999986 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.2e-08   1.5e-05       4      32 ..     303     331 ..     302     397 .. 0.83
   2 ?   -1.9   0.4       7.6   4.9e+03      36      36 ..     776     776 ..     651     817 .. 0.65

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.2e-08
                  -B--TT---HHHHHHHHHHSTEEEEEGGG CS
    PF13207.1   4 itGppGsGKsTlakeLaerlglpvlsldd 32 
                  ++GppG GK+Tla ++a++ g++vl+l++
  MMETSP0890-20130614|32189_1 303 LSGPPGIGKTTLAHLIAKEHGYDVLELNA 331
                  79************************998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 7.6
                  G CS
    PF13207.1  36 e 36 
                  +
  MMETSP0890-20130614|32189_1 776 V 776
                  0 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     8e-08   5.2e-05      52      78 ..     300     326 ..     240     342 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 8e-08
    PF05496.7  52 hvllyGpPGlGkttlakiiakelgvel 78 
                    ll+GpPG+Gkttla++iake g ++
  MMETSP0890-20130614|32189_1 300 AALLSGPPGIGKTTLAHLIAKEHGYDV 326
                  579*******************98765 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.5e-07   0.00029       2      72 ..     298     376 ..     297     395 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.5e-07
    PF13173.1   2 rkilvitGpRrvGKttllkqlakellkeesilyinlddeelrkladpe.........ll.elfleklkekkkylflDEiqe 72 
                   k+ ++ Gp ++GKttl+  +ake+    ++l++n  d++ +k  +++         l+  ++  k+ + k +l++DE+  
  MMETSP0890-20130614|32189_1 298 AKAALLSGPPGIGKTTLAHLIAKEHG--YDVLELNASDARSKKSLTEQlggtldcptLKfGAINAKDMTTKRLLIMDEVDG 376
                  68899******************999..9*********99977665555666554432223333333448899*****975 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.7e-07   0.00031       6      55 ..     285     336 ..     282     343 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.7e-07
    PF06414.7   6 snkk.vpeqekp..kavllgGqpGAGKtslaellleelaagnivridaDelrk 55 
                  ++kk vp++e+p  ka ll G+pG GKt+la+l+ +e+ + ++++++a + r+
  MMETSP0890-20130614|32189_1 285 KRKKlVPSKENPnaKAALLSGPPGIGKTTLAHLIAKEH-GYDVLELNASDARS 336
                  67777888877744789*********************.99999999988775 PP

>> PF12738.2  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.2e-06   0.00078       3      59 ..     118     184 ..     116     185 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.2e-06
    PF12738.2   3 icvsgysgdd..rkrlqkliralGasiskeltkkvTHLic........kraegeKyekAqkwgipvV 59 
                  +++sg+ ++   r++++  i++lG+ +s++++ k+ +L++        + +eg+K++ A +++++++
  MMETSP0890-20130614|32189_1 118 FVLSGVLDEKpeRSQVESYIKSLGGRVSGSVSGKTNFLVVgtlledgrSVEEGRKFKDAIERKVTII 184
                  678888888888***********************************999**************997 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.6e-06    0.0017      11      62 ..     299     344 ..     293     369 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.6e-06
    PF13245.1  11 pllvvtGgPGtGKTttlaaiiaallaarekpgrsvllv.aptgraakrlserl 62 
                  +  ++ G+PG GKT tla++ia         g  vl + a+  r  k l e l
  MMETSP0890-20130614|32189_1 299 KAALLSGPPGIGKT-TLAHLIAKEH------GYDVLELnASDARSKKSLTEQL 344
                  66789*********.*******977......4446666344555555777766 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.7e-06     0.005      24      45 ..     296     320 ..     286     352 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.7e-06
    PF13191.1  24 p...lllvtGpsGiGKSsLlrelak 45 
                  p   + l++Gp+GiGK++L++ +ak
  MMETSP0890-20130614|32189_1 296 PnakAALLSGPPGIGKTTLAHLIAK 320
                  334689**************98443 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.4e-06    0.0048       3      32 ..     302     331 ..     301     404 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.4e-06
    PF13671.1   3 llvGlpGsGKstlaerllkklgyvrlsqdt 32 
                  ll G+pG GK+tla+ ++k++gy +l  ++
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAKEHGYDVLELNA 331
                  689*******************87765554 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.7       7.2   4.7e+03      32      62 ..      17      44 ..       7      68 .. 0.49
   2 !   17.8   0.0   4.4e-06    0.0028       2      31 ..     302     331 ..     302     343 .. 0.87
   3 ?   -0.9   0.0       2.6   1.7e+03      32      83 ..     486     541 ..     450     578 .. 0.65
   4 ?   -0.3   0.4       1.7   1.1e+03      35      57 ..     780     798 ..     763     826 .. 0.52

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 7.2
    PF13238.1 32 engleeevddkidtkeskeldedkldelldk 62
                 +++++e +dd+   ++ +e++e++ +  +d 
  MMETSP0890-20130614|32189_1 17 KREIIELDDDE---DDDDEIKEKRIKTTIDL 44
                 44444444444...33333333333223333 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 4.4e-06
    PF13238.1   2 litGtpGvGKtTlakeLaerlgdvlrdlak 31 
                  l++G+pG GKtTla ++a+++g+ + +l+ 
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAKEHGYDVLELNA 331
                  589*****************9888877655 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 2.6
    PF13238.1  32 engleeevddkidtkeskeldedkldelldkleenes................elaegenviidghla 83 
                   +g+ e+++d++  k+++++ +  +++ l++ +e++s                              +
  MMETSP0890-20130614|32189_1 486 THGVTEDNNDDNTSKQKRKATYLAMKSRLKGGIEKDSilrytafdgaksilsdH------------ER 541
                  456666666777888888888888777777777777667665444433333331............33 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 1.7
    PF13238.1  35 leeevddkidtkeskeldedkld 57 
                  +e+++dd+    e +++d++++d
  MMETSP0890-20130614|32189_1 780 VEDDDDDD----EENDEDQENDD 798
                  33333333....22222222221 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.5e-05     0.029       3      46 ..     302     345 ..     300     381 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-05
                  EEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B- CS
    PF07728.9   3 lLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrre 46 
                  lL GppG+gK++la ++a+  +  v++ + ++  +++ l+ ++ 
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAKEHGYDVLELNASDARSKKSLTEQLG 345
                  89*****************9999999999888888888877765 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0002      0.13       4      23 ..     302     321 ..     299     418 .. 0.85
   2 ?   -0.6   0.0       1.2   7.6e+02      33      94 ..     651     711 ..     641     735 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0002
    PF05729.7   4 ilqGeaGsGKTtLlqklasa 23 
                  +l G++G+GKTtL++ +a++
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAKE 321
                  789***********999876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.2
    PF05729.7  33 afklvFflslrelsrskna.....rsladlLfsqlpepaapvsevwivllelperlLlilDglDelv 94 
                  + +l F+l+ r+   ++ +       l  ++ ++++++ a+ ++        ++   l++D +De  
  MMETSP0890-20130614|32189_1 651 TSELAFHLNHRCSASKQTIrldylEPLLSYISQPFQQLDANDDT------DDNNACALVIDRMDEYG 711
                  46788999988888888887777777888888888888888888......88888999999999965 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.4e-05     0.061       3      28 ..     302     328 ..     300     351 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.4e-05
    PF13521.1   3 vitGgpstGKTtlleaLa.argypvvp 28 
                   ++G+p+ GKTtl+  +a ++gy v++
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAkEHGYDVLE 328
                  589***************557*99875 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021      0.14       3      22 ..     302     321 ..     300     339 .. 0.86
   2 ?   -1.5   0.0       2.5   1.6e+03      90     135 ..     359     406 ..     351     419 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00021
                  EEE-------HHHHHHHHHH CS
   PF03266.10   3 fiTGepgvGKtTlvkkvlel 22 
                  +++G+pg+GKtTl + ++++
  MMETSP0890-20130614|32189_1 302 LLSGPPGIGKTTLAHLIAKE 321
                  689************99875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 2.5
                  HHHH.HHH-EEEE------GGG-HHHHHHHHHHHT.TTSEEEEE--SS CS
   PF03266.10  90 rnal.eeadviviDEIGkmElkskkfkeaveevls.sekpvlatvhrr 135
                  + ++ +++ ++++DE+  +  + +   +++ ++++ s+ p++     r
  MMETSP0890-20130614|32189_1 359 NAKDmTTKRLLIMDEVDGLSGSDRGGSQELIRLIKiSRVPIICICNDR 406
                  4444356669*****988888777777777777777777777776666 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00033      0.21      48      83 ..     299     331 ..     294     397 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00033
   PF01695.12  48 enlvllGpsGvGKthlAialgveavraglsvlfvrl 83 
                  +  +l Gp+G+GKt lA  ++ e   +g+ vl +++
  MMETSP0890-20130614|32189_1 299 KAALLSGPPGIGKTTLAHLIAKE---HGYDVLELNA 331
                  66799************988764...5555554444 PP

>> PF04086.8  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.4       1.3   8.7e+02     118     191 ..     186     271 ..     163     301 .. 0.46
   2 ?   15.0   9.8   1.7e-05     0.011      49     217 ..     669     845 ..     666     849 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.3
    PF04086.8 118 eskkskktvksmierkpkekglek......ekkkkkeqeskkskeskassspkksrpstps........llkaeeipggktsrrakka 191
                    +k   tv++m++++++++++ +       k+kk ++ s+++++s+ s s  +  +  ++         +++++  +g++ ++ + +
  MMETSP0890-20130614|32189_1 186 GWEKLVDTVEEMRKKRQSKPSEGSlgklglTKSKKRKVGSSTAPSSSMSGSGIERIE--NElwadrykpKSTKDVLGNGEVVKKLRSF 271
                  445666677777777777666555666766333333333333333333333322211..11233445665555555545444444433 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.7e-05
    PF04086.8  49 lhLsYiDkLLddvrteFrdlYkeklkqekassrleeaa........eFdeiFdqllrel.Ekeskkqakspkamkkfeeskkskktvksmierkpkekglek..ekkkkkeqeskkskeskassspkksrpstpsllkaeeipggktsrrakkaaklkskessgkeksskkkaaakkakK 217
                  + L Y + LL+ +++ F +l +++  +++    l+  +          d++Fd+    l  k+s   +   ka++kf+++ +s   +++  +++ + +++ +  +k+++ e + + +++ ++++++++++++++++l+a+e  ++k +   k  a   +k++ ++++sskk  ++kk+kK
  MMETSP0890-20130614|32189_1 669 IRLDYLEPLLSYISQPFQQLDANDDTDDNNACALV--IdrmdeygvSRDDFFDSMPDLLvTKNSPIPKLDTKAKTKFTKTYNSRNHSSQALHKDAPAPKKTSakRKRADVEGNVEDDDDDDEENDEDQENDDDEKVLSAKEQAAAKKAFAIK-QAGIGAKKKPATSTSSKKGSTTKKTKK 845
                  689******************88744333332221..1234544454567777776654368888888899999999999999999999999888888766633333333344444444444444444444444577777777444333222.223333355666666677777677655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1005  (0.0735079); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:01.11
# Mc/sec: 1865.27
//
Query:       MMETSP0890-20130614|32190_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 434.34
//
Query:       MMETSP0890-20130614|32191_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0086   15.6   9.0        0.5   10.0   0.4    4.2  3  PF13758.1  Prefoldin subunit
  ------ inclusion threshold ------
      0.019   14.2   0.2       0.45    9.8   0.0    2.8  2  PF02346.11 Chordopoxvirus fusion protein
       0.02   14.6   1.9      0.059   13.0   1.0    2.1  1  PF07889.7  Protein of unknown function (DUF1664)
      0.061   11.0  14.8     0.0076   14.0   0.7    2.1  2  PF01496.14 V-type ATPase 116kDa subunit family
       0.18   12.1   0.0       0.18   12.1   0.0    3.4  5  PF04102.7  SlyX
       0.21   11.5  15.7       0.26   11.2   0.7    3.3  2  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit


Domain annotation for each model (and alignments):
>> PF13758.1  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.5     0.031        71       3      28 ..      75     100 ..      73     161 .. 0.83
   2 !   10.0   0.4   0.00022       0.5      59      97 ..     295     336 ..     246     338 .. 0.63
   3 ?   -1.3   0.0      0.74   1.7e+03      77      89 ..     337     349 ..     335     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.031
    PF13758.1   3 slaklreseaeydelkeeleelkeed 28 
                  +l++lr++ +e++++ke +e+ ++++
  MMETSP0890-20130614|32191_1  75 QLSSLRNELNELRAWKEGIEKAEKKK 100
                  78899999999999999999997632 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00022
    PF13758.1  59 kqgvertkeqv...vdlisrRiDyVkenietlekrleaaEkk 97 
                   ++  r+ +qv   vd i +R+  V+  ++t+ +rl+ aE++
  MMETSP0890-20130614|32191_1 295 VDQHGRQLDQVkgqVDYIGHRVTHVEGEMKTFGQRLNRAEEN 336
                  335557777776668999999999999999999999999986 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.74
    PF13758.1  77 iDyVkenietlek 89 
                  iD V+en+++++ 
  MMETSP0890-20130614|32191_1 337 IDLVQENVQKVQI 349
                  899****998764 PP

>> PF02346.11  Chordopoxvirus fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0002      0.45       3      53 ..     246     296 ..     244     299 .. 0.95
   2 ?    1.2   0.0     0.097   2.2e+02      15      45 ..     314     344 ..     301     357 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
   PF02346.11   3 lkdlekrllvlekkfqtivkcckrleealkRLEnHletlRkamlnLakKID 53 
                   ++l+k l +le  +  ++ +   l+ +++  E H+e l + ++ L  K+D
  MMETSP0890-20130614|32191_1 246 YTSLVKELSQLESRVGFTEAHVDYLQRRMDYTEVHIEKLGRCIIYLDEKVD 296
                  6899**********************************************9 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.097
   PF02346.11  15 kkfqtivkcckrleealkRLEnHletlRkam 45 
                    +++++ ++k+ +++l+R E  ++ + ++ 
  MMETSP0890-20130614|32191_1 314 HRVTHVEGEMKTFGQRLNRAEENIDLVQENV 344
                  5567777788888888888888777766665 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   2.6e-05     0.059      42     112 ..     292     365 ..     289     375 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.6e-05
    PF07889.7  42 adAvasvtkqlekvseava...sakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvv 112
                  ++ v++ ++ql++v+ +v    +   h+ +++++++++l++ +e ++ ++e+v++++   ++i+++++s+k+  
  MMETSP0890-20130614|32191_1 292 DEKVDQHGRQLDQVKGQVDyigHRVTHVEGEMKTFGQRLNRAEENIDLVQENVQKVQIYAKKIDDNLRSFKKQY 365
                  567889999*****9776511155668899*************************************9998654 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   5.8     0.035        79      85     197 ..      71     190 ..      43     260 .. 0.69
   2 ?   14.0   0.7   3.3e-06    0.0076      18     154 ..     266     398 ..     222     433 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.035
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX.....XXXXXXXX.XXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  85 eveeslesLekelneleelrnvlreekefleenk...veelrelssldeefkalraaeglklg........fvaGvikreklealerllwralrgnlyikqaeieevledpkekvekevfiiff 197
                  ++e  l+sL++elnel  +++ +++++++ ee+    +ee  ++s+ + e+k+ r+ e    +        +  G   +e l  l  ++++++r +l+ + ++   + ++   +++++ fi  +
  MMETSP0890-20130614|32191_1  71 SAEGQLSSLRNELNELRAWKEGIEKAEKKKEEAIkleKEERCAMSREETEQKEQREREL---AfyriledsLSQGWESEETLSRLACEVTDITRLKLFYSAVRGATIRKEIS-EIRQSEFISEV 190
                  56778899999999999999999999998888545432222222222222222222222...23346677699999999****************99999999888888888.55555555443 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3.3e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXX CS
   PF01496.14  18 dvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaeglklgfvaGvikrek 154
                  +v+ +qr++      ++++ r + +l++++++++ +l + k + d+  +  v  +e e+++  ++l+++ee+ + +++++++ + +++ ++ + ++++++  +++ +++      + +    + +lg ++G++++ +
  MMETSP0890-20130614|32191_1 266 HVDYLQRRMDYTEVHIEKLGRCIIYLDEKVDQHGRQLDQVKGQVDYIGH-RVTHVEGEMKTFGQRLNRAEENIDLVQENVQKVQIYAKKIDDNLRSFKKQY-KKHLKRKAAASVVSSVV--GVFTLGTMSGFVNAAR 398
                  4555677777777777888888888888888888888888888888888.599999999999999999999999999999999999999999999999974.44443333333333332..3555556667666655 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         5   1.1e+04      40      53 ..      75      88 ..      72     101 .. 0.62
   2 ?    6.1   0.0    0.0056        13       5      48 ..     252     295 ..     248     296 .. 0.79
   3 ?   12.1   0.0   7.8e-05      0.18       2      52 ..     263     313 ..     262     329 .. 0.86
   4 ?   -0.1   0.0      0.49   1.1e+03      24      45 ..     327     348 ..     310     364 .. 0.59
   5 ?   -4.6   1.1         6   1.4e+04      61      67 ..     480     485 ..     474     486 .. 0.52

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 5
    PF04102.7 40 qlrllaerlkelee 53
                 ql+ l+++l el++
  MMETSP0890-20130614|32191_1 75 QLSSLRNELNELRA 88
                 77777777777773 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0056
    PF04102.7   5 rieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerl 48 
                   + +LE+++ f+e  ++ L + +   +  i++l r + +l e++
  MMETSP0890-20130614|32191_1 252 ELSQLESRVGFTEAHVDYLQRRMDYTEVHIEKLGRCIIYLDEKV 295
                  68899999999999999999888888888888888777777765 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 7.8e-05
    PF04102.7   2 leerieeLEiklafqedtieeLNevvaeqqkeidrlqrqlrllaerlkele 52 
                  +e++++ L+ ++ ++e  ie+L + ++  ++++d+  rql++++ ++  ++
  MMETSP0890-20130614|32191_1 263 TEAHVDYLQRRMDYTEVHIEKLGRCIIYLDEKVDQHGRQLDQVKGQVDYIG 313
                  5889999**************999999999999999999999998887555 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.49
    PF04102.7  24 Nevvaeqqkeidrlqrqlrlla 45 
                   + + + ++ id +q++++ ++
  MMETSP0890-20130614|32191_1 327 GQRLNRAEENIDLVQENVQKVQ 348
                  4444555555555555555554 PP

  == domain 5    score: -4.6 bits;  conditional E-value: 6
    PF04102.7  61 aeeepPP 67 
                  + +epPP
  MMETSP0890-20130614|32191_1 480 S-DEPPP 485
                  4.55555 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   5.1      0.16   3.7e+02      24      84 ..      64     127 ..      54     184 .. 0.71
   2 ?   11.2   0.7   0.00011      0.26      21     135 ..     245     370 ..     239     370 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.16
    PF13094.1  24 qllqekralerqlaaelksielLqeeirreeaelekdeekleeLekn..ak..alererkeeskn 84 
                  +l++ k   e ql+  ++ +++L++ ++  e++ +k ee + +Lek+  +   ++e+e ke++++
  MMETSP0890-20130614|32191_1  64 GLVRFKSSAEGQLSSLRNELNELRAWKEGIEKAEKKKEEAI-KLEKEerCAmsREETEQKEQRER 127
                  688899999**********************7777766655.56665113311333333333333 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00011
    PF13094.1  21 dyeqllqekralerqlaaelksielLqeeirreeaelekdeekleeLeknakalererkeesknl.......hpvlqelesevleenalaekedlklseknleptl......deellellkqlnkhle 135
                   y +l++e  +le+ +  ++ +++ Lq++ + +e   ek  + +  L +++ ++ r++ + ++++        +v  e     ++ n   e++d  l + n ++++      d+ l++ +kq +khl+
  MMETSP0890-20130614|32191_1 245 RYTSLVKELSQLESRVGFTEAHVDYLQRRMDYTEVHIEKLGRCIIYLDEKVDQHGRQLDQVKGQVdyighrvTHVEGEMKTFGQRLNRAEENID--LVQENVQKVQiyakkiDDNLRSFKKQYKKHLK 370
                  6778888888888888888888888888888888888888888888888888888888888888877774444444444455555555555555..33333333334666778888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1414  (0.103423); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.84
# Mc/sec: 1740.21
//
Query:       MMETSP0890-20130614|32192_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-08   33.4   0.0    3.3e-08   33.4   0.0    2.0  2  PF00447.12 HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.4e-12   3.3e-08      27      71 ..      15      58 ..       3      88 .. 0.84
   2 ?   -2.2   1.5      0.31   4.3e+03      82      82 ..     166     166 ..      99     194 .. 0.63

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.4e-12
   PF00447.12 27 sfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekk 71
                  +v+  + e++k  Lpky+++s+f+SF RQLn +g+h+++ +++ 
  MMETSP0890-20130614|32192_1 15 CLVIPSPLELEK-NLPKYYRTSKFSSFQRQLNNFGYHRTQAQQSL 58
                 567778888988.9*************************999865 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.31
   PF00447.12  82 k 82 
                  +
  MMETSP0890-20130614|32192_1 166 Q 166
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.99
# Mc/sec: 525.26
//
Query:       MMETSP0890-20130614|32188_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 1542.92
//
Query:       MMETSP0890-20130614|32194_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 291.73
//
Query:       MMETSP0890-20130614|32195_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-33  112.6   0.0    9.7e-33  111.9   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   7.1e-37   9.7e-33       2      94 .]      67     159 ..      66     159 .. 0.97

  Alignments for each domain:
  == domain 1    score: 111.9 bits;  conditional E-value: 7.1e-37
                  SB---CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23   2 pkkakegdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  +++ak gd+++vhy+g l  d ++fdss++r++pf+f++G+++vikg+++gl gm+vG+ r+ltip++laYg++g  g kipp++tlvfe+el+
  MMETSP0890-20130614|32195_1  67 TQRAKVGDRISVHYDGILYsDCSKFDSSRDREEPFSFTLGKNEVIKGWDDGLRGMCVGDIRKLTIPSDLAYGDQGS-GDKIPPGSTLVFEIELI 159
                  5669**************98********************************************************.999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       909  (0.0664862); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.77
# Mc/sec: 594.42
//
Query:       MMETSP0890-20130614|32193_1  [L=911]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-63  212.9   0.0    6.2e-63  212.2   0.0    1.3  1  PF00069.20 Protein kinase domain
    3.9e-31  108.0   0.0    6.3e-31  107.3   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    1.5e-16   60.1   0.0    1.5e-08   34.5   0.0    2.9  2  PF13499.1  EF-hand domain pair
      4e-16   56.9   0.1     0.0016   17.4   0.1    4.8  4  PF00036.27 EF hand
    1.7e-10   40.2   0.4    0.00017   21.0   0.0    4.3  3  PF13833.1  EF-hand domain pair
    3.7e-10   38.6   0.4       0.68    9.8   0.0    4.8  4  PF13405.1  EF-hand domain
    8.6e-09   34.2   2.9     0.0031   16.6   0.1    4.0  4  PF13202.1  EF hand
      0.006   15.3   0.1      0.011   14.4   0.0    1.3  1  PF03289.8  Poxvirus protein I1
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.013   15.1   0.0    3.0  3  PF01636.18 Phosphotransferase enzyme family
       0.02   13.8   0.0      0.045   12.7   0.0    1.6  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
       0.12   11.3   0.1       0.37    9.7   0.0    1.7  2  PF02958.15 Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.2   0.0   4.9e-66   6.2e-63       3     260 .]     345     619 ..     343     619 .. 0.94

  Alignments for each domain:
  == domain 1    score: 212.2 bits;  conditional E-value: 4.9e-66
                  EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHH........HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E.....EE------EEE........CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfee.kdelylvleyveggdlfdllk........kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel.....kiaDFGlakkl........eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  +++ lG+G++G+V+ +++k +g k+A+K+l+ ++ +     +  +E+  ++ l+Hp+ivkl+evf++ +++++lv+e+++gg+lf++l           + +se  i ++++q+l +l+y+H+ gi+HrDLK eN L+d+++       k++DFGla+ +         ++s++++++vg+ +Y+APEvl+   ey++++D+Ws+Gvi+y l++g +pf g+   +++ +++++++ +l+++ +  +  s+ +k++i  ll+++ ++Rlta+++l+h++l
  MMETSP0890-20130614|32193_1 345 KKKVLGRGGYGVVFICTRKADGCKFACKQLDLSRLSPVGLAQLHEEVGCMRALDHPHIVKLIEVFYSqRKRCHLVMELCKGGELFSVLDekcaaagrPVQVFSEGRIAQVTRQMLGALRYMHNCGITHRDLKLENWLFDENDPEgsahvKLVDFGLARLFgrdynvlnDTPSGRFQDRVGSAYYVAPEVLN--GEYDARCDLWSMGVIVYMLFCGAPPFWGS---SDKDIMRRVKSHNLSFPDELFHGVSDCAKNFIIGLLDRNVNRRLTAAQALEHEFL 619
                  6789***********************************999999********************99566777****************8888766555666*************************************7765567777*********99*******999*********************..89***************************...9999************************************************986 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   5.1e-34   6.3e-31       3     222 ..     345     577 ..     343     610 .. 0.86

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 5.1e-34
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEE.CTTSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHT......GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET.....TTEEEE-----CEESTTTSCE......EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT- CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.kesaeeeekeefleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlefLrkk......ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee.....ekvvkisDfGLardiekddyy......kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegk 222
                   +k lG+G +G V+ +t k     + +k a K+l  ++ +    +++ ee+ +m++l+hp+ivkl+ v++ +++++ +v+e++kgG+L ++L +k        + ++  ++ +++ q+  +++y+++  + HrdL   N L +e     + +vk+ DfGLar   +d +        + +++  +  ++apE+l ++++  + D Ws Gv+++ +f+ g+ p+ g s++++++++k+++
  MMETSP0890-20130614|32193_1 345 KKKVLGRGGYGVVFICTRK----ADGCKFACKQLdLSRLSPVGLAQLHEEVGCMRALDHPHIVKLIEVFYsQRKRCHLVMELCKGGELFSVLDEKcaaagrPVQVFSEGRIAQVTRQMLGALRYMHNCGITHRDLKLENWLFDEndpegSAHVKLVDFGLARLFGRDYNVlndtpsGRFQDRVGSAYYVAPEVL-NGEYDARCDLWSMGVIVYMLFC-GAPPFWGSSDKDIMRRVKSHN 577
                  5789*************99....999********4445666669**************************677779*******************999998888899999*********************************98888778***********994443334322213334455678899***87.579******************9.88**************98754 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.2e-11   1.5e-08       6      65 ..     730     793 ..     706     794 .. 0.86
   2 !   22.5   0.0   6.8e-08   8.4e-05       2      66 .]     806     867 ..     804     867 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.2e-11
    PF13499.1   6 FkllDkdgdgyldkeeLlrllkhlgsels....deevrevldyifkelDkngdGvlsfeEflqa 65 
                  F   D++ dg+l+ +eL++++ + + +      +  + e+l+++f+ +D n+++ +s+ Ef++a
  MMETSP0890-20130614|32193_1 730 FLNADTNSDGKLTFTELKEYIARESKHSEeslqNALSSEELEALFDAVDVNKTRAISYREFVAA 793
                  9999******************99855447777666666999*******************986 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 6.8e-08
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  l+ aF ++D+ g gy+++e  ++   ++     ++ +   +++ ++e+D+ gdG+++  Efl ++
  MMETSP0890-20130614|32193_1 806 LHAAFAAIDSEGLGYISREAVVATVGASDLG--NSATA-DIQAALEEADTSGDGRVDIGEFLDYF 867
                  7889****************99999888864..44444.46888*****************9985 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.4e-06    0.0054       3      27 ..     727     751 ..     725     753 .. 0.86
   2 !   13.5   0.0   2.4e-05      0.03       1      25 [.     769     793 ..     769     794 .. 0.94
   3 ?    4.2   0.0     0.023        28       2      20 ..     806     824 ..     805     830 .. 0.88
   4 !   17.4   0.1   1.3e-06    0.0016       1      28 [.     842     869 ..     842     870 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.4e-06
                  HHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   3 keaFkefDkDgdGkIsfeEfkealk 27 
                  ++ F  +D++ dGk++f E+ke+++
  MMETSP0890-20130614|32193_1 727 RDDFLNADTNSDGKLTFTELKEYIA 751
                  5668899**************9876 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.4e-05
                  HHHHHHHHHCTTTSSEBEHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkea 25 
                  el+ +F+ +D++++  Is+ Ef++a
  MMETSP0890-20130614|32193_1 769 ELEALFDAVDVNKTRAISYREFVAA 793
                  7999******************986 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.023
                  HHHHHHHHCTTTSSEBEHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfe 20 
                  l  aF+ +D  g G+Is e
  MMETSP0890-20130614|32193_1 806 LHAAFAAIDSEGLGYISRE 824
                  5689*************87 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 1.3e-06
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  +++ a +e+D+ gdG+++  Ef++++k+
  MMETSP0890-20130614|32193_1 842 DIQAALEEADTSGDGRVDIGEFLDYFKS 869
                  58999*******************9986 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   0.00017       1      50 [.     737     793 ..     737     797 .. 0.87
   2 ?    4.1   0.0     0.025        31      12      45 ..     797     824 ..     792     830 .. 0.82
   3 !   11.0   0.0   0.00017      0.21      14      52 ..     826     868 ..     823     870 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
    PF13833.1   1 ekGlItreeLkral.allglkg........lseeevdilfrefDtdgdGkisfeEFcvl 50 
                  ++G++t+ eLk+ + +   + +        ls ee+++lf+++D ++  +is+ EF+++
  MMETSP0890-20130614|32193_1 737 SDGKLTFTELKEYIaRE-SK-HseeslqnaLSSEELEALFDAVDVNKTRAISYREFVAA 793
                  58**********88443.33.25899******************************986 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.025
    PF13833.1  12 ralallglkglseeevdilfrefDtdgdGkisfe 45 
                  r     +++ l ++ +++ f ++D +g G+is e
  MMETSP0890-20130614|32193_1 797 R-----RVD-LDDKSLHAAFAAIDSEGLGYISRE 824
                  4.....555.77888999*************975 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00017
    PF13833.1  14 l.allglkg..lseee.vdilfrefDtdgdGkisfeEFcvlle 52 
                  + a++g ++   s+   +++ + e+Dt gdG+++  EF+++++
  MMETSP0890-20130614|32193_1 826 VvATVGASDlgNSATAdIQAALEEADTSGDGRVDIGEFLDYFK 868
                  555555555443333349999*******************997 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00055      0.68       2      26 ..     726     750 ..     725     761 .. 0.85
   2 !    8.6   0.0    0.0014       1.7       1      25 [.     769     793 ..     769     798 .. 0.92
   3 ?    4.9   0.0     0.021        26       2      20 ..     806     824 ..     805     832 .. 0.89
   4 !    9.4   0.1   0.00075      0.94       2      27 ..     843     868 ..     842     875 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00055
                  HH---GCC-------B---HHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaL 26 
                  lr+ F   D++ dGk+++ EL+  +
  MMETSP0890-20130614|32193_1 726 LRDDFLNADTNSDGKLTFTELKEYI 750
                  56778999*************9865 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0014
                  HHH---GCC-------B---HHHHH CS
    PF13405.1   1 elreaFklfDkdgdGkidaeELrda 25 
                  el+++F++ D +++  i+  E+++a
  MMETSP0890-20130614|32193_1 769 ELEALFDAVDVNKTRAISYREFVAA 793
                  6899******************886 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.021
                  HH---GCC-------B--- CS
    PF13405.1   2 lreaFklfDkdgdGkidae 20 
                  l++aF ++D  g G+i++e
  MMETSP0890-20130614|32193_1 806 LHAAFAAIDSEGLGYISRE 824
                  789*************997 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.00075
                  HH---GCC-------B---HHHHHHH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLr 27 
                  +++a +  D+ gdG++d+ E++d ++
  MMETSP0890-20130614|32193_1 843 IQAALEEADTSGDGRVDIGEFLDYFK 868
                  67788889**************9988 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.5e-06    0.0031       3      23 ..     729     748 ..     726     751 .. 0.88
   2 ?    3.5   0.0     0.034        43       1      13 [.     770     782 ..     770     794 .. 0.81
   3 ?   -2.8   0.0       3.5   4.4e+03       4      19 ..     809     824 ..     807     824 .. 0.64
   4 !   11.6   0.1   9.8e-05      0.12       1      21 [.     843     863 ..     843     868 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.5e-06
                  HHHHHH--S----B-HHHHHH CS
    PF13202.1   3 dtFrafDlNgDGkIsreELkr 23 
                  d F  +D+N DGk+++ ELk+
  MMETSP0890-20130614|32193_1 729 D-FLNADTNSDGKLTFTELKE 748
                  6.8899*************97 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.034
                  HHHHHHHH--S-- CS
    PF13202.1   1 lkdtFrafDlNgD 13 
                  l+++F+a+D+N+ 
  MMETSP0890-20130614|32193_1 770 LEALFDAVDVNKT 782
                  789********85 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3.5
                  HHHHH--S----B-HH CS
    PF13202.1   4 tFrafDlNgDGkIsre 19 
                  +F a+D  g G Isre
  MMETSP0890-20130614|32193_1 809 AFAAIDSEGLGYISRE 824
                  5778876555677765 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 9.8e-05
                  HHHHHHHH--S----B-HHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreEL 21 
                  ++++++++D+ gDG++++ E+
  MMETSP0890-20130614|32193_1 843 IQAALEEADTSGDGRVDIGEF 863
                  68899**************99 PP

>> PF03289.8  Poxvirus protein I1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.1e-06     0.011     136     277 ..     670     810 ..     634     817 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.1e-06
    PF03289.8 136 kksaksfefkdatyeleadkieelinqlvkngaisldekssvkdsvyviddellevlkerlfrsPqvkdnlisrtrlydyltrvtkkeeskiyvilkdekiaeilgietvkigsfvytkhs.llvssissnvdryskkfqeef 277
                  ++s+++ ++++   +l +d  e+++++l +  +++  ek  v  +  +++ + l +l++ ++ +   +d+ ++ t l +y+ r +k+ e+ +  +l  e++  +++  +v +++     +   + ++++ +vd   k ++ +f
  MMETSP0890-20130614|32193_1 670 RRSSANGTVDGDLATLPQDSEENIVDTLRRFAKLNALEKVVVELAASLMEPDRLVALRDDFLNADTNSDGKLTFTELKEYIARESKHSEESLQNALSSEELEALFD--AVDVNKTRAISYReFVAAALYRRVDLDDKSLHAAF 810
                  34445556777888999**********************************************************************************9999875..44444444444431456789999998888888766 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.9      0.34   4.2e+02     116     166 ..     269     319 ..     216     324 .. 0.59
   2 ?   15.1   0.0     1e-05     0.013     132     197 ..     435     503 ..     424     516 .. 0.71
   3 ?   -1.7   0.1       1.3   1.7e+03      97     143 ..     839     879 ..     788     895 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.34
                  GHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHC.SS-- CS
   PF01636.18 116 adflapyltllrllesataalvasellelleeleervlaalaallpg.aepp 166
                  +  +a++  +++l+ + ++ l + +l++  +e  +r ++++a++l +  e +
  MMETSP0890-20130614|32193_1 269 RQVAARQFQRAALHLEMLRLLSDEQLPP-PLETSRRYARWRARHLSPlGENA 319
                  3333333333444444433444444444.56666778999999887655555 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1e-05
                  HHH.HHHHHCTHH..HHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE...TTTTEE.EE---TT-BB CS
   PF01636.18 132 ata.alvaselle..lleeleervlaalaallpgaeppvllHgDlhpgNllvd...pddgrv.gviDfedagl 197
                  ++a a+++++ +   ++++++++   +l al+      +++H+Dl++ N+l+d   p++     ++Df++a+l
  MMETSP0890-20130614|32193_1 435 KCAaAGRPVQVFSegRIAQVTRQ---MLGALRY-MHNCGITHRDLKLENWLFDendPEGSAHvKLVDFGLARL 503
                  55557777777774334444443...3333333.245799*************999444444589***99975 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHH CS
   PF01636.18  97 alaellaalhqadpaadpladflapyltllrllesataalvaselle 143
                  a a+ +aal +ad+  d+  d++++  ++   + +a        l+e
  MMETSP0890-20130614|32193_1 839 ATADIQAALEEADTSGDGRVDIGEFLDYFKSARLRA------LRLQE 879
                  568888999999888888888885544444444444......33332 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05     0.045     123     166 ..     454     499 ..     389     507 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
    PF06293.9 123 lleavGrliakmhragvnHtdlnahnilldeee..ekakvwliDld 166
                  + ++   + + mh+ g+ H+dl   n l+de++  + a+v l+D+ 
  MMETSP0890-20130614|32193_1 454 VTRQMLGALRYMHNCGITHRDLKLENWLFDENDpeGSAHVKLVDFG 499
                  44444445789*********************9999********96 PP

>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0003      0.37     212     248 ..     466     502 ..     441     504 .. 0.87
   2 ?   -2.7   0.0       1.8   2.3e+03     117     177 ..     693     754 ..     689     780 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0003
   PF02958.15 212 efnvLnHGDlwvnNimfkydeegepedvilvDFQlsr 248
                  + + ++H Dl++ N +f  ++ +   +v+lvDF l+r
  MMETSP0890-20130614|32193_1 466 HNCGITHRDLKLENWLFDENDPEGSAHVKLVDFGLAR 502
                  567799*************99999*********9887 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.8
   PF02958.15 117 lklvlkkLAkfHAaslalkeekpevfkqlkkglleedyvssa.keefeelleellkaaleal 177
                  +  +l+++Ak+ A+  +++e   + ++  +  +l +d+++++ ++  +  ++el + +++  
  MMETSP0890-20130614|32193_1 693 IVDTLRRFAKLNALEKVVVELAASLMEPDRLVALRDDFLNADtNSDGKLTFTELKEYIARES 754
                  55678888888888888888665555554444555555555433333444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.35u 0.35s 00:00:01.70 Elapsed: 00:00:01.10
# Mc/sec: 1984.62
//
Query:       MMETSP0890-20130614|32197_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-20   72.7   7.1    2.5e-20   72.5   4.9    1.1  1  PF00428.14 60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.64    9.9   4.2       0.92    9.4   2.9    1.3  1  PF04568.7  Mitochondrial ATPase inhibitor, IATP
          3    6.7   4.8        4.3    6.3   3.3    1.2  1  PF01056.13 Myc amino-terminal region


Domain annotation for each model (and alignments):
>> PF00428.14  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   4.9   5.6e-24   2.5e-20       2      87 ..      18     108 ..      17     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 5.6e-24
   PF00428.14   2 ptaadikavlkaagveveaerlkllvkalegkdikeliangsakla......aaaaaaaaaaaaaaaaaaaeeekkeeeeeEeedddmGfgL 87 
                  pta+d+k+ l a+g+e+++e+l+l +++l+gkdi+el++ g++kla      + ++ +  + +a++aaa+a+eekkeeee Eee+ dmG+g+
  MMETSP0890-20130614|32197_1  18 PTAEDVKKALDAVGIEADSESLDLMISQLAGKDIDELMTVGRSKLAkfggggGGGGGGGGGDGAVEAAAEAAEEKKEEEE-EEEEIDMGGGM 108
                  9************************************************9987777777888888888888888888887.58888***874 PP

>> PF04568.7  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.9    0.0002      0.92      31      64 ..      65     100 ..      39     104 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0002
    PF04568.7  31 egetgsGagkggGg.GsireaggaF.gkrEaAqEee 64 
                   g  g G g ggGg G++ +a +a  +k+E+ +Eee
  MMETSP0890-20130614|32197_1  65 FGGGGGGGGGGGGGdGAVEAAAEAAeEKKEEEEEEE 100
                  344455666777888***998887615667766665 PP

>> PF01056.13  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.3   0.00094       4.3     226     246 ..      84     104 ..      77     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00094
   PF01056.13 226 seseeeeeeeeeeeeeeeiDv 246
                  +  e  ee++eeeeeeeeiD+
  MMETSP0890-20130614|32197_1  84 AAAEAAEEKKEEEEEEEEIDM 104
                  4557889999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       722  (0.0528087); expected 273.4 (0.02)
Passed bias filter:                      553  (0.0404476); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.66
# Mc/sec: 439.33
//
Query:       MMETSP0890-20130614|32200_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-22   78.8   0.0    1.9e-22   78.8   0.0    3.0  3  PF08564.5  Cdc37 C terminal domain
    2.7e-15   56.1   1.4    2.7e-15   56.1   1.0    2.3  2  PF08565.6  Cdc37 Hsp90 binding domain
    1.5e-11   44.7   8.3    1.5e-11   44.7   5.8    3.0  2  PF03234.9  Cdc37 N terminal kinase binding
  ------ inclusion threshold ------
      0.054   11.5   6.6      0.071   11.1   0.1    2.1  2  PF01763.11 Herpesvirus UL6 like
        1.8    7.3   9.8        6.1    5.5   6.6    2.0  1  PF04111.7  Autophagy protein Apg6


Domain annotation for each model (and alignments):
>> PF08564.5  Cdc37 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.0       2.8   7.7e+03      93      93 ..      46      46 ..      19      91 .. 0.62
   2 ?   -0.9   0.0      0.48   1.3e+03      42      71 ..     181     208 ..     177     238 .. 0.60
   3 !   78.8   0.0   6.8e-26   1.9e-22       1      83 [.     321     395 ..     321     403 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.8
    PF08564.5 93 e 93
                 +
  MMETSP0890-20130614|32200_1 46 S 46
                 1 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.48
    PF08564.5  42 kvlakmkveeAekiverliesGllsleeki 71 
                  + la ++ ++A+k++   +++G+l  e + 
  MMETSP0890-20130614|32200_1 181 EFLACIDLDDAKKLLH--QNGGILLHEHAQ 208
                  5677788888888876..466776665553 PP

  == domain 3    score: 78.8 bits;  conditional E-value: 6.8e-26
    PF08564.5   1 inlPgaeslDpeeerkkrevFeslPpelqkaletkdldevnkvlakmkveeAekiverliesGllsleekiegekkkkeleee 83 
                  +++Pg  +lDp+      evFeslP+ +q+a+e+kd  +++++l++m+ e+A+++++r+++sGl++ ++ +++++ ++e++ +
  MMETSP0890-20130614|32200_1 321 RLGPG--GLDPV------EVFESLPKAMQDAFESKDTGKLQAALESMPLEDAKYHMKRCEDSGLWVSNSSAQDDAPQEEDNVT 395
                  57899..****9......****************************************************8666655555443 PP

>> PF08565.6  Cdc37 Hsp90 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.2      0.45   1.2e+03       9      51 ..      37      79 ..      25     100 .. 0.60
   2 !   56.1   1.0   9.9e-19   2.7e-15      61     172 ..     187     296 ..     150     297 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.45
    PF08565.6  9 teeekekkkkkfvetteklnaeaesatekesidddelklspet 51
                 + ++++++++k+++++e l+ae e+  e ++ +d e   s+++
  MMETSP0890-20130614|32200_1 37 SMRKENEQNSKRIKEIEALLAEIERGGEAAEYEDSEALESEKA 79
                 4566777788888888888855555555555554433333333 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 9.9e-19
    PF08565.6  61 dykesekFLlehpeiv.sEqqkdaLvieafdlqleekeelaeqvvHQsillqYileLakslkvdpraviklFFkkitakaepeakeaFleevqatkeriktRakelmeeseee 172
                  d+++++k L ++  i+  E+ + + ++++++ ++++ +e++++ + +s ll+ i eLa s++  pr+v+  FF++i++  ++ + + F++ vq +  ri++Ra  + +e ++e
  MMETSP0890-20130614|32200_1 187 DLDDAKKLLHQNGGILlHEHAQSYALLSCLEDEMNGFHEKMKRAAQNSQLLAHITELAVSMNRHPRDVVLPFFHRIQD--SN-YLSGFQDAVQGFITRIQKRAIDKRKEMDAE 296
                  5888999999888775267788899****************************************************9..55.9*******************9998888776 PP

>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   5.8   5.6e-15   1.5e-11      14      82 ..       2      69 ..       1     106 [. 0.80
   2 ?    1.0   0.5      0.15   4.2e+02      97     147 ..     255     310 ..     140     323 .. 0.68

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 5.6e-15
    PF03234.9 14 DDsDvevHPNvDkkSfirwkqqaihekreqrkkeieelekelkinkkllervdkllselkeeeelssek 82
                 DD+  + HPN+Dk S +r k+++++e+ +  ++e+ +++ke ++n+k++++++ ll+e+++  e+ + +
  MMETSP0890-20130614|32200_1  2 DDEE-DCHPNIDKSSWFRMKHRSRVEREDLEEQEKISMRKENEQNSKRIKEIEALLAEIERGGEAAEYE 69
                 8999.9****************************************************99874444322 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.15
    PF03234.9  97 a....sveeeeeeqpkynemledLldqv.kdevdekkaaklieelkkhrkklkkee 147
                       +  ++ +    +++ ++  ++++ k + d++k+ +   +++ +++kl +e+
  MMETSP0890-20130614|32200_1 255 VlpffHRIQDSNYLSGFQDAVQGFITRIqKRAIDKRKEMDAEAKVNGDKDKLINED 310
                  14442222333334556777777777776666777777777788888888876654 PP

>> PF01763.11  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.2    0.0079        22     381     431 ..      37      87 ..      29     119 .. 0.66
   2 ?   11.1   0.1   2.6e-05     0.071     284     342 ..     246     304 ..     224     323 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0079
   PF01763.11 381 kLkeenedlekklkeleseLerlreeekasasleaedaeletldtlealrk 431
                  ++++ene+  k++ke+e+ L ++++  +a+   ++e  e e+++++ ++++
  MMETSP0890-20130614|32200_1  37 SMRKENEQNSKRIKEIEALLAEIERGGEAAEYEDSEALESEKAELALKIQE 87 
                  5799********************995555555444333333333222222 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.6e-05
   PF01763.11 284 ekksdakkrLvkllinlkemksvggitdvVesfledvsqslvdknklldtsqpgfgkaa 342
                  + +  ++  ++ +   ++++   +g +d V+ f++ + ++ +dk k +d + +  g + 
  MMETSP0890-20130614|32200_1 246 SMNRHPRDVVLPFFHRIQDSNYLSGFQDAVQGFITRIQKRAIDKRKEMDAEAKVNGDKD 304
                  45566777788888999*********************************998888763 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.6    0.0022       6.1      35     120 ..      39     126 ..      28     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0022
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04111.7  35 dkelraaeeekdvYkqylekLesqnkeee..nvealdseldeLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylre 120
                   ke ++  +  +   + l ++e   ++ e  ++eal+se+ eL+ +++++le++  +e++++   +++ +   +k  +++ + +  +e
  MMETSP0890-20130614|32200_1  39 RKENEQNSKRIKEIEALLAEIERGGEAAEyeDSEALESEKAELALKIQERLEKIAYMEENRKWNIDNICHTASDKTIISNTKSSDPSE 126
                  4455555555555556666666554443355******************************999999999999998888887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1118  (0.081773); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.65
# Mc/sec: 1504.17
//
Query:       MMETSP0890-20130614|32198_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-21   75.3   0.8    5.8e-21   74.5   0.6    1.3  1  PF13967.1  Late exocytosis, associated with Golgi transport
  ------ inclusion threshold ------
        0.2   11.1   4.9       0.38   10.2   0.1    2.6  3  PF01124.13 MAPEG family


Domain annotation for each model (and alignments):
>> PF13967.1  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.6   8.4e-25   5.8e-21       3     152 ..      21     156 ..      19     160 .. 0.92

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 8.4e-25
    PF13967.1   3 ltslvislvlglvafllFcilRkknkrvYaprtllkeseeelppplpskglfgWipallkisdeevlqsaGLDAyvflrflkmgikiflvlavlallvLlPvnatggedekkkaskegldklsisnveegssrlwahlvfayvftglvly 152
                   +++ ++ + +l ++++F + R +++ +Y+ ++ ++     +++   +k +++Wi +ll i+d+ + +++G+D+yv + ++k++  +f ++a++++lvL+Pv+atgg ++      +g+ +++i n+++ s r++a l++ ++ t+l+++
  MMETSP0890-20130614|32198_1  21 GAAFQVNGLWALGLVAFFELGRIRYTTMYKSKSNIS-----SFD---RKRPLAWILPLLAIDDDTLCARVGVDGYVSILYIKTMKMVFGIVAFFGVLVLIPVYATGGGGR------DGFYSITIDNLPKRSTRFFAPLFALILLTVLMCM 156
                  67889999************************9974.....455...245789******************************************************998......499***************************9997 PP

>> PF01124.13  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.6e-05      0.38      76     119 ..      25      72 ..      19      73 .. 0.82
   2 ?   -3.9   0.2       1.3   8.6e+03     114     123 ..     102     111 ..      90     117 .. 0.55
   3 ?    2.5   0.0     0.013        88     100     126 ..     126     153 ..     123     156 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.6e-05
   PF01124.13  76 gagtglvallgaiflvaRvahalgyiag.gppp...gRslgflltllv 119
                  ++++ ++ +l+a f ++R+ ++ +y ++ +++     R l+++l ll+
  MMETSP0890-20130614|32198_1  25 QVNGLWALGLVAFFELGRIRYTTMYKSKsNISSfdrKRPLAWILPLLA 72 
                  46789********************99976665677999999998876 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.3
   PF01124.13 114 lltllvllvl 123
                  +++++  lvl
  MMETSP0890-20130614|32198_1 102 IVAFFGVLVL 111
                  3333333333 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.013
   PF01124.13 100 yiag.gpppgRslgflltllvllvlala 126
                  y  + ++ p Rs+ f++ l++l++l ++
  MMETSP0890-20130614|32198_1 126 YSITiDNLPKRSTRFFAPLFALILLTVL 153
                  545556899***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.88
# Mc/sec: 1070.19
//
Query:       MMETSP0890-20130614|32199_1  [L=774]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-08   33.8   0.0    2.7e-08   33.1   0.0    1.4  1  PF07653.12 Variant SH3 domain
    2.7e-07   29.7   0.0    5.3e-07   28.8   0.0    1.5  1  PF00018.23 SH3 domain
  ------ inclusion threshold ------
      0.022   14.4   6.0      0.082   12.6   4.1    2.0  1  PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
       0.94    7.8   4.3       0.32    9.3   0.6    1.8  2  PF04791.11 LMBR1-like membrane protein
          2    7.9   8.0         20    4.7   1.2    3.6  4  PF10143.4  2,3-bisphosphoglycerate-independent phosphoglycerate mutase
        5.8    4.5   6.4       0.58    7.8   1.2    1.8  2  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.2e-11   2.7e-08       2      54 ..     717     773 ..     716     774 .] 0.86

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.2e-11
                  EEE-S-B--SS-----B----EEEEE......E-S----BEEEE-TT---B--HHHHH CS
   PF07653.12   2 vraiedyvaedpeeLslkkGDvikvl.....gskesdgwwegesgGrvGlfPsslVee 54 
                  v+a++d+     ++L +k+GD+i  +     +  + +gw+ ge +Gr G+fPs++V++
  MMETSP0890-20130614|32199_1 717 VKALFDFAEVQDGDLGFKQGDIII-TseadfKAAGAGGWISGEIQGRSGVFPSNYVQP 773
                  89*******************775.646665555666*******************98 PP

>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.3e-10   5.3e-07       1      48 []     718     768 ..     718     768 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.3e-10
                  EESS-BE-SSTTS-EB-TT-EEEEEEESSS.....SEEEEEETTTTB---EEG CS
   PF00018.23   1 iAlYDYearesdELsfkkGDviivleksed.....gWwkgrlkgtgkeGliPs 48 
                  +Al+D++ +++++L fk+GD+ii  e + +     gW  g+ +  g+ G +Ps
  MMETSP0890-20130614|32199_1 718 KALFDFAEVQDGDLGFKQGDIIITSEADFKaagagGWISGEIQ--GRSGVFPS 768
                  7************************9775556789********..69*****8 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.1   3.6e-05     0.082      40     106 ..     145     212 ..     142     238 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-05
    PF05852.6  40 fektkks.lrsleklkkekelkekvssleteieekkkelelLkkfdrkklerleaLtdrveelkeele 106
                  fektk+   +++e++ ++k+ ++kv++l+t+ ++k ke e+L++ ++k  e+   L ++ + l++ l+
  MMETSP0890-20130614|32199_1 145 FEKTKQEiAKRHEAVLEHKHYASKVQQLQTKASDKDKEKEKLQRNNEKAAEASQTLENAKATLNASLA 212
                  7777655167899999*****************************************99999988876 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   0.00014      0.32     227     318 ..     136     345 ..     100     353 .. 0.76
   2 ?   -1.2   0.1      0.22   5.1e+02     200     277 ..     408     485 ..     393     528 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00014
   PF04791.11 227 edveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseeklllikeedlksletlknkkaqrkvav......................................................................................................................lsklqrslvyplaalt 318
                    +e+++  ++  +++++++ +  +e+++  +++ +l+++ +   k++ekl + +e+ +++++tl+n+ka  +  +                                                                                                                      l++  +  +y+ a+l+
  MMETSP0890-20130614|32199_1 136 APLESELELFEKTKQEIAKRHEAVLEHKHYASKVQQLQTKASDKDKEKEKLQRNNEKAAEASQTLENAKATLNASLaahdaaridlldkrvtelkgmlhrfcekalgalgisaeeaaaksatidldkyniygdvnvesavsrmrrglsnttksvggsvdsvamrlqhmrrhagayttssggdqqknaetsdpveLETNAMASRYQKAWLV 345
                  5566777777888889999999999*******************************************9977776677787888888877777777777777777777777777777777777777777777777777777777777777777777777776666666666666666666666666666666666666666666666655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.22
   PF04791.11 200 kledekeeaessvddilesvdrlsrlledveeqisksateegklsrelkkaaesnsqeedslaldreenkivkseekl 277
                    ++ +e +e  ++d + s++ l+ +l++ +e    +a   +k+sr  +k  + n + +++ + ++++ +  ++++++
  MMETSP0890-20130614|32199_1 408 LVAKLTETVEAPLNDGIASFKDLPGKLRERREAGLDNAHYAAKVSRLQNKDPQANDKAAERFQRNKTKATEAEEKARN 485
                  445556666667777777777777777777777777777777777766666666666666655555555544444444 PP

>> PF10143.4  2,3-bisphosphoglycerate-independent phosphoglycerate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.2    0.0086        20      87     169 ..     134     215 ..     119     218 .. 0.76
   2 ?   -1.1   0.0      0.52   1.2e+03      86     133 ..     284     333 ..     241     344 .. 0.64
   3 ?    4.4   0.0      0.01        23     118     165 ..     373     420 ..     359     423 .. 0.79
   4 ?   -2.0   0.1      0.96   2.2e+03     121     160 ..     452     489 ..     445     496 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0086
                  HHHHT-EE---.-EEEEE---TTEEEEEEE-----S-------S-----------S.S.----HHHHHHHHHHHHHHHHHHT-H CS
    PF10143.4  87 Liealneelgg.eevkfkpgvehrallvlrgeglsdkisdtdPhiegrklkevkplgedeeakktaellnelleksteilkehp 169
                  L++ l+ el+  e  k k+ +  r+  vl+++++ +k+++   ++++++ ++ k + ++e+a++ +++l+++ ++++  l++h+
  MMETSP0890-20130614|32199_1 134 LLAPLESELELfE--KTKQEIAKRHEAVLEHKHYASKVQQLQTKASDKDKEKEKLQRNNEKAAEASQTLENAKATLNASLAAHD 215
                  5555555555523..455556666666776677889*******988877777777778899999************99999996 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.52
                  CHHHHT-EE----EEEEE---TTEEEEEE.E-----S-------S.---- CS
    PF10143.4  86 eLiealneelggeevkfkpgvehrallvl.rgeglsdkisdtdPh.iegr 133
                  +  +++ + ++++ +++++   h  +    +g++ +++ +++dP   e +
  MMETSP0890-20130614|32199_1 284 NTTKSVGGSVDSVAMRLQHMRRHAGAYTTsSGGDQQKNAETSDPVeLETN 333
                  33455666778899999999999999888445556899999999744444 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.01
                  ---S-------S-----------S.S.----HHHHHHHHHHHHHHHHH CS
    PF10143.4 118 glsdkisdtdPhiegrklkevkplgedeeakktaellnelleksteil 165
                  +l ++++dtdP + + ++   ++  ++ +a  +a+l+ +l+e+++  l
  MMETSP0890-20130614|32199_1 373 ELAAAVKDTDPTELKAQVLAFHAALDEVKAVLEAKLVAKLTETVEAPL 420
                  57899******9666667777666677899999*******99987766 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.96
                  S-------S-----------S.S.----HHHHHHHHHHHH CS
    PF10143.4 121 dkisdtdPhiegrklkevkplgedeeakktaellnellek 160
                  +++++ dP+++++  ++ +    + +a +  e  ++++ +
  MMETSP0890-20130614|32199_1 452 SRLQNKDPQANDKAAERFQRN--KTKATEAEEKARNVTLA 489
                  567889999888877766666..23344444444444444 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.2   0.00025      0.58      57     129 ..     147     220 ..      18     257 .. 0.84
   2 ?   -3.4   0.1      0.59   1.3e+03     226     271 ..     457     502 ..     444     517 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00025
                  XXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....X CS
   PF01496.14  57 ekekpdvpesk...evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssld 129
                  +++++ +++++   e++ ++ ++++l+ + ++ ++ +e+L+++ ++  e  + l+++k  l+++   ++++++++d
  MMETSP0890-20130614|32199_1 147 KTKQEIAKRHEavlEHKHYASKVQQLQTKASDKDKEKEKLQRNNEKAAEASQTLENAKATLNASL--AAHDAARID 220
                  23333333333555788999999999999999999999999999999999999999999998853..333333333 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.59
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14 226 ersellskvnkriedlktvleeteselekvlakiadellaweeqvs 271
                  +  ++ +k+ +r +  kt+  e e++ ++v  + +++ll+ +++v+
  MMETSP0890-20130614|32199_1 457 KDPQANDKAAERFQRNKTKATEAEEKARNVTLACREQLLSFDQMVK 502
                  4445666777777777788888888888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1580  (0.115565); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:01.40
# Mc/sec: 1324.84
//
Query:       MMETSP0890-20130614|32196_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.7e-103  344.2   0.0   7.9e-103  343.9   0.0    1.0  1  PF00996.13 GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> PF00996.13  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.9   0.0  5.8e-107  7.9e-103     189     434 ..       1     251 [.       1     256 [. 0.98

  Alignments for each domain:
  == domain 1    score: 343.9 bits;  conditional E-value: 5.8e-107
                  SS--SSSGGGGSBSHHHHHHHHHHHHHHHH----SEEEE-----------HHHHHH----EE-S---SB--B-TT--B---B------B-S.-EEE-GGG-G....GGEEEE-EEEEEEEEESS--TTSTT-SSEEEEE-GGG----S-EEEEEEEGGGTSS----EEEEEEEE--SS-HHHHTHHHHHT----SEEE---EEEEEES-----SSEEE-----S-SBTHHHHHHHHHHHHHH--------- CS
   PF00996.13 189 lalyrddeyleePaletleriklyleslarygksPylyPlYGlGelPqgfarlsaiyGGtymLdkpvdeivldedgkvvGvksedevlrak.kvvsdPsYvp....ekvkkkgkvvraicilshPipntkdaesvqiilpqnqvgrksdiyvalvssahnvaakgkylaivsttvetenPeselepglellgpieekfvkisdlyepvddgsedkifvsksyDatthfettveDvkdifkrltgkaldlsk 434
                  +al  +d+yl+ePal+t e i+ly+ sl +ygksPy+yP+YGlG+lP+gf+rl+ai+GGt+mL+++vdei++d++gk+ G+k +++v++a+ ++++dPsY++    +k++++g+vvraic l+h ipnt++a+s+qii+p  qv+r++diyv++v++ah+v+a+gky+ai sttvet+ P  el+p+l+llgpi  kfv++ dlyep++dg++d++f+sks+Dat+hfe+  +Dv+d+++r+tg++ldl+ 
  MMETSP0890-20130614|32196_1   1 MALRLNDSYLSEPALPTAEAIRLYCYSLDQYGKSPYIYPVYGLGGLPEGFSRLCAIHGGTFMLNRTVDEILYDDQGKAWGIKGDNQVAKANmCILGDPSYFEpstsKKCRQTGQVVRAICFLNHAIPNTNNADSLQIIIPAAQVQRQHDIYVVMVAHAHMVTAQGKYVAIASTTVETKTPLDELKPALNLLGPIMTKFVDVVDLYEPIHDGTNDNCFISKSFDATSHFESSSNDVLDLYRRITGTDLDLDI 251
                  7999**************************************************************************************83578******999999********************************************************************************************************************************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 778.08
//
Query:       MMETSP0890-20130614|32217_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-21   75.4   0.0    8.3e-13   48.3   0.0    3.3  3  PF12796.2  Ankyrin repeats (3 copies)
    7.1e-19   66.4   0.0     0.0018   17.8   0.0    5.1  4  PF00023.25 Ankyrin repeat
    8.4e-19   67.0   2.3     0.0016   18.4   0.0    4.9  5  PF13857.1  Ankyrin repeats (many copies)
    8.5e-18   64.2   2.2    5.9e-10   39.2   0.0    4.3  4  PF13637.1  Ankyrin repeats (many copies)
      2e-15   55.2   0.1    0.00048   20.0   0.0    5.5  5  PF13606.1  Ankyrin repeat
     0.0007   19.1   0.1     0.0016   17.9   0.1    1.5  1  PF00226.26 DnaJ domain
     0.0036   16.7   0.0      0.008   15.6   0.0    1.5  1  PF00134.18 Cyclin, N-terminal domain
  ------ inclusion threshold ------
      0.091   12.2   0.0       0.18   11.2   0.0    1.4  1  PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.3e-05      0.11      53      80 ..      44      71 ..      35      79 .. 0.75
   2 !   48.3   0.0   4.9e-16   8.3e-13       1      87 [.      54     154 ..      54     158 .. 0.86
   3 !   20.9   0.0   1.7e-07   0.00029      26      80 ..     199     254 ..     174     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.3e-05
    PF12796.2 53 nakdkegntpLhlAvrnghlelvklLle 80
                  ++d++g  +L +A+  g+le+v++L++
  MMETSP0890-20130614|32217_1 44 REQDAYGSDALTWAAGCGQLEVVRYLVQ 71
                 4566888888888888888888888876 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 4.9e-16
    PF12796.2   1 LhlAaengnlelvklL............lekgadvdl.getpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                  L +Aa  g+le+v++L            ++kg  +++ g+++Lh Aa++++le+v++L++  ++++n  +++g +pL lAv + ++++vk+ l++  +  +
  MMETSP0890-20130614|32217_1  54 LTWAAGCGQLEVVRYLvqicdperevwpIKKGSAPTTaGRRALHFAARNNRLEVVRFLVNdLKCNPNPLSENGVSPLQLAVWQLNVDVVKFFLTQVKNARQ 154
                  679*************7777777777777777666668999******************966789999999**********************98665555 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 1.7e-07
    PF12796.2  26 getpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLle 80 
                    tpLh Aa  gn + +++L++  gad ++ d  ++ p   A rn+h+el+++L +
  MMETSP0890-20130614|32217_1 199 DHTPLHKAAFVGNWKLCQWLIDvVGADDDCVDRTNRKPSDEAERNNHHELANWLRK 254
                  378*******************88999999999*******************9975 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.1e-05       0.1       2      23 ..      50      71 ..      49      75 .. 0.88
   2 !   17.8   0.0     1e-06    0.0018       2      29 ..      92     120 ..      91     123 .. 0.86
   3 !   12.2   0.0   6.2e-05      0.11       1      24 [.     125     148 ..     125     155 .. 0.93
   4 !   17.5   0.0   1.3e-06    0.0022       3      32 ..     200     230 ..     198     231 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-05
                 SCBHHHHHHHTTHHHHHHHHHH CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLls 23
                 G  +L +Aa +g+levv++L++
  MMETSP0890-20130614|32217_1 50 GSDALTWAAGCGQLEVVRYLVQ 71
                 556999**************98 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1e-06
                  SCBHHHHHHHTTHHHHHHHHHH.TTSSTT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLls.qGAdln 29 
                  G+ +LH Aa++++levv++L++   +++n
  MMETSP0890-20130614|32217_1  92 GRRALHFAARNNRLEVVRFLVNdLKCNPN 120
                  5669*****************98777766 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 6.2e-05
                  TSCBHHHHHHHTTHHHHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsq 24 
                  +G +PL lA+   n++vvk++l q
  MMETSP0890-20130614|32217_1 125 NGVSPLQLAVWQLNVDVVKFFLTQ 148
                  799******************985 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 1.3e-06
                  CBHHHHHHHTTHHHHHHHHHH.TTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLls.qGAdlnaqd 32 
                   TPLH Aa+ gn + +++L++  GAd + +d
  MMETSP0890-20130614|32217_1 200 HTPLHKAAFVGNWKLCQWLIDvVGADDDCVD 230
                  6*************************88877 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.8e-05     0.098      12      36 ..      46      70 ..      41      80 .. 0.87
   2 !   18.4   0.0   9.4e-07    0.0016      14      42 ..      90     119 ..      85     122 .. 0.84
   3 !   16.0   0.0   5.5e-06    0.0095       7      52 ..     117     162 ..     113     165 .. 0.86
   4 !   16.6   0.0   3.5e-06     0.006       9      48 ..     195     232 ..     189     239 .. 0.78
   5 ?   -3.0   0.0       5.5   9.3e+03      29      49 ..     305     326 ..     302     329 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.8e-05
    PF13857.1 12 tdeggntpLhlAakggalevvrlLl 36
                 +d +g+ +L +Aa +g+levvr+L+
  MMETSP0890-20130614|32217_1 46 QDAYGSDALTWAAGCGQLEVVRYLV 70
                 688999******************9 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 9.4e-07
    PF13857.1  14 eggntpLhlAakggalevvrlLl.apgadl 42 
                  ++g+ +Lh+Aa++++levvr+L+ +  +++
  MMETSP0890-20130614|32217_1  90 TAGRRALHFAARNNRLEVVRFLVnDLKCNP 119
                  57889******************6666665 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 5.5e-06
    PF13857.1   7 advnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdglta 52 
                   ++n + e+g++pL lA+++ +++vv+++l +  +++ r+ +g++ 
  MMETSP0890-20130614|32217_1 117 CNPNPLSENGVSPLQLAVWQLNVDVVKFFLTQVKNARQRNVCGCSL 162
                  566777899*********************9999999999999765 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 3.5e-06
    PF13857.1   9 vnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsd 48 
                   n++d    tpLh+Aa  g++ ++++L+   gad ++ d  
  MMETSP0890-20130614|32217_1 195 RNHSDH---TPLHKAAFVGNWKLCQWLIdVVGADDDCVDRT 232
                  444444...*******************7777777777765 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 5.5
    PF13857.1  29 levvrlLl.apgadlnlrdsdg 49 
                  ++++++Ll a+   l  +d ++
  MMETSP0890-20130614|32217_1 305 AHAFIKLLeARDLLLLECDDRC 326
                  5667777766666666665554 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0017       2.8      23      54 .]      38      70 ..      31      70 .. 0.77
   2 !   39.2   0.0   3.4e-13   5.9e-10       1      54 []      92     146 ..      92     146 .. 0.96
   3 !   13.1   0.1   5.6e-05     0.096      14      54 .]     176     219 ..     161     219 .. 0.67
   4 ?   -0.9   0.0       1.3   2.3e+03       6      22 ..     238     254 ..     233     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0017
    PF13637.1 23 kgid.inrtdesGntaLhiAalrgnieilklLl 54
                 + id +  +d++G  aL  Aa  g++e++++L+
  MMETSP0890-20130614|32217_1 38 QSIDkLREQDAYGSDALTWAAGCGQLEVVRYLV 70
                 344444455**********************96 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 3.4e-13
    PF13637.1   1 gltaLhyaaisgrlelvklLlek.gidinrtdesGntaLhiAalrgnieilklLl 54 
                  g++aLh aa+ +rle+v++L++  + ++n + e+G ++L++A++  n++++k++l
  MMETSP0890-20130614|32217_1  92 GRRALHFAARNNRLEVVRFLVNDlKCNPNPLSENGVSPLQLAVWQLNVDVVKFFL 146
                  689******************7769****************************97 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 5.6e-05
    PF13637.1  14 lelvklLl......ekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  l++++lLl      +++ d   ++ s  t+Lh+Aa  gn++++++L+
  MMETSP0890-20130614|32217_1 176 LPVANLLLhylsytAFRED---RNHSDHTPLHKAAFVGNWKLCQWLI 219
                  6666666655544433444...566677******************8 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 1.3
    PF13637.1   6 hyaaisgrlelvklLle 22 
                  + a + +++el+++L +
  MMETSP0890-20130614|32217_1 238 DEAERNNHHELANWLRK 254
                  67888999999999965 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0027       4.7       5      23 ..      53      71 ..      49      76 .. 0.85
   2 !   20.0   0.0   2.8e-07   0.00048       2      29 ..      92     120 ..      91     121 .. 0.85
   3 !    8.0   0.0     0.002       3.5       1      22 [.     125     146 ..     125     151 .. 0.93
   4 !   12.3   0.0   8.6e-05      0.15       3      27 ..     200     225 ..     198     226 .. 0.89
   5 ?   -3.6   0.0         8   1.4e+04       5      11 ..     378     384 ..     377     389 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0027
    PF13606.1  5 pLhlAasngrielveaLle 23
                 +L +Aa +g++e+v++L++
  MMETSP0890-20130614|32217_1 53 ALTWAAGCGQLEVVRYLVQ 71
                 7889*************97 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 2.8e-07
    PF13606.1   2 GnTpLhlAasngrielveaLle.ngadin 29 
                  G+ +Lh Aa+n+r+e+v++L++   +++n
  MMETSP0890-20130614|32217_1  92 GRRALHFAARNNRLEVVRFLVNdLKCNPN 120
                  899******************83366655 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.002
    PF13606.1   1 nGnTpLhlAasngrielveaLl 22 
                  nG +pL lA+ + ++++v++ l
  MMETSP0890-20130614|32217_1 125 NGVSPLQLAVWQLNVDVVKFFL 146
                  7899***************987 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 8.6e-05
    PF13606.1   3 nTpLhlAasngrielveaLlen.gad 27 
                   TpLh Aa  g+++l+++L++  gad
  MMETSP0890-20130614|32217_1 200 HTPLHKAAFVGNWKLCQWLIDVvGAD 225
                  59******************954776 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 8
    PF13606.1   5 pLhlAas 11 
                   LhlA+ 
  MMETSP0890-20130614|32217_1 378 YLHLALL 384
                  6999975 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   9.5e-07    0.0016      16      54 ..     285     318 ..     277     321 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.5e-07
                  HHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHH CS
   PF00226.26  16 eIkkaYrklalkyHPDknkddeeeaeekfkeineAyevL 54 
                   Ikka+   a+++HPD++ +      ++f ++ eA + L
  MMETSP0890-20130614|32217_1 285 IIKKAFCARAKQLHPDRCGEA-----HAFIKLLEARDLL 318
                  59***************7444.....6899999998776 PP

>> PF00134.18  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-06     0.008      24      67 ..     236     281 ..     224     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.7e-06
                  S..S--HHHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHHCC-. CS
   PF00134.18  24 e..elnpemrsilidwlvevsekfklspetlylavnyldRflskrs 67 
                  +  e + +++ +l++wl + s++ +ls+ +++l  n++d+f ++++
  MMETSP0890-20130614|32217_1 236 PsdEAERNNHHELANWLRKTSRHRRLSRACVCLNLNLIDKFSTEEK 281
                  2336778999*******************************98875 PP

>> PF12922.2  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.18      32     121 ..     196     280 ..     181     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
    PF12922.2  32 ddqdsisshknaLeiygyLlqvlvealekeaaaksrkgasakaakakkkkkkakkakveswkweeqrervLeliakvLqldlsrlfttta 121
                  +++d  + hk+a+     L q+l+ ++ +     ++++ +  + k++ + + ++ ++ ++w ++++r r L   + +L+l+l   f+t+ 
  MMETSP0890-20130614|32217_1 196 NHSDHTPLHKAAFVGNWKLCQWLIDVVGA-----DDDCVDRTNRKPSDEAERNNHHELANWLRKTSRHRRLSRACVCLNLNLIDKFSTEE 280
                  4577777888888888889*********3.....34444444455666666677899*************************98888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.40s 00:00:01.16 Elapsed: 00:00:00.99
# Mc/sec: 1120.72
//
Query:       MMETSP0890-20130614|32223_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-17   63.6   0.8    2.2e-07   30.9   0.0    3.1  3  PF12796.2  Ankyrin repeats (3 copies)
    6.1e-16   58.3   0.5    3.1e-05   24.2   0.0    4.1  4  PF13637.1  Ankyrin repeats (many copies)
      4e-11   42.6   1.1       0.01   15.9   0.0    5.9  6  PF13857.1  Ankyrin repeats (many copies)
    3.1e-09   36.0   2.0       0.37   11.0   0.0    6.2  6  PF13606.1  Ankyrin repeat
    1.6e-08   33.8   1.1       0.32   10.7   0.0    5.1  5  PF00023.25 Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   8.1e-11   2.2e-07       3      86 ..      21     117 ..      19     120 .. 0.88
   2 !   28.8   0.0   3.8e-10     1e-06      26      86 ..     123     184 ..     113     186 .. 0.89
   3 ?    1.2   0.0      0.15   4.2e+02      63      78 ..     204     219 ..     192     230 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 8.1e-11
    PF12796.2   3 lAaengnlelvklLle.kgadvdl.....getpLhlAa.......eagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                  +A+e +++ l+ +L++ +g d+++     get+ h+++       + g   +++l+l +g+d+ ++  +g tp hlA+r++ + ++ lL e    ++
  MMETSP0890-20130614|32223_1  21 NAIEAKRITLLSKLVSkEGVDINMilteeGETAAHVCVilcgalnDVGYETVLRLILRMGCDPSTRRLDGSTPAHLAARFELTSCLALLREFSGQLD 117
                  69999**********7689*************999887666666677778**************************************998765555 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 3.8e-10
    PF12796.2  26 getpLhlAaeagnleivklLleaga.dvnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                  g  p h++a+ g+++ +k+Ll +g+ +v+ ++k+g++  ++A+++ghle++k L e ga+++
  MMETSP0890-20130614|32223_1 123 GYAPAHICAAWGKTASIKWLLTYGNvSVDRTHKNGMSLAMFAASAGHLETLKCLKELGAELS 184
                  44599*******************85788888***************************986 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.15
    PF12796.2  63 LhlAvrnghlelvklL 78 
                  + +A+  g+ e+v++L
  MMETSP0890-20130614|32223_1 204 MAMACYEGRDEVVDWL 219
                  5678889999999888 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06     0.005       6      42 ..      20      58 ..      15      67 .. 0.90
   2 !   10.7   0.0   0.00019      0.52      14      53 ..      70     109 ..      68     110 .. 0.89
   3 !   24.2   0.0   1.1e-08   3.1e-05       4      53 ..     126     176 ..     123     176 .. 0.93
   4 ?    1.1   0.0       0.2   5.4e+02       7      20 ..     206     219 ..     201     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
    PF13637.1  6 hyaaisgrlelvklLlek.gidinrt.desGntaLhiAa 42
                  +a+ + r+ l+  L++k g+din++  e+G+ta h+++
  MMETSP0890-20130614|32223_1 20 LNAIEAKRITLLSKLVSKeGVDINMIlTEEGETAAHVCV 58
                 5799999999******999*****************987 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00019
    PF13637.1  14 lelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  + +++l+l  g d+  +  +G t+ h+Aa+++  ++l lL
  MMETSP0890-20130614|32223_1  70 ETVLRLILRMGCDPSTRRLDGSTPAHLAARFELTSCLALL 109
                  5578999988*******999************99999988 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 1.1e-08
    PF13637.1   4 aLhyaaisgrlelvklLlekg.idinrtdesGntaLhiAalrgnieilklL 53 
                  + h +a++g +  +k+Ll +g ++++rt ++G+++  +Aa++g++e lk+L
  MMETSP0890-20130614|32223_1 126 PAHICAAWGKTASIKWLLTYGnVSVDRTHKNGMSLAMFAASAGHLETLKCL 176
                  6799**************9955***************************98 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.2
    PF13637.1   7 yaaisgrlelvklL 20 
                  +a++ gr e+v +L
  MMETSP0890-20130614|32223_1 206 MACYEGRDEVVDWL 219
                  7999********98 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0089        24      17      44 ..      16      44 ..       7      57 .. 0.81
   2 !    9.3   0.0   0.00046       1.3      10      56 .]      44      97 ..      34      97 .. 0.71
   3 !    6.9   0.0    0.0025       6.9       2      25 ..      77      99 ..      76     106 .. 0.76
   4 !    5.7   0.0    0.0059        16       1      38 [.     108     145 ..     108     147 .. 0.87
   5 !   15.9   0.0   3.7e-06      0.01       1      32 [.     142     173 ..     142     181 .. 0.94
   6 ?    3.0   0.0     0.042   1.2e+02      19      35 ..     203     219 ..     189     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0089
    PF13857.1 17 ntpLhlAakggalevvrlLl.apgadlnl 44
                  ++  +A+++ + +++ +L+ + g+d+n+
  MMETSP0890-20130614|32223_1 16 ANVVLNAIEAKRITLLSKLVsKEGVDINM 44
                 488889*********************97 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00046
    PF13857.1 10 natdeggntpLhlAak.ggal......evvrlLlapgadlnlrdsdgltaldlA 56
                 + + e+g+t+ h+ +  +gal      +v+rl+l+ g+d+ +r  dg t+ +lA
  MMETSP0890-20130614|32223_1 44 MILTEEGETAAHVCVIlCGALndvgyeTVLRLILRMGCDPSTRRLDGSTPAHLA 97
                 5566677777777777777773333324667777****************9998 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0025
    PF13857.1  2 lehgpadvnatdeggntpLhlAak 25
                 l+ g  d+ ++++ g+tp hlAa+
  MMETSP0890-20130614|32223_1 77 LRMG-CDPSTRRLDGSTPAHLAAR 99
                 6677.66667777788******97 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0059
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlap 38 
                  Ll++++ +++ +d +g+ p h+ a  g +  +++Ll +
  MMETSP0890-20130614|32223_1 108 LLREFSGQLDLEDVEGYAPAHICAAWGKTASIKWLLTY 145
                  56666788999************************965 PP

  == domain 5    score: 15.9 bits;  conditional E-value: 3.7e-06
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevv 32 
                  Ll +g+++v++t+++g+++ ++Aa++g+le +
  MMETSP0890-20130614|32223_1 142 LLTYGNVSVDRTHKNGMSLAMFAASAGHLETL 173
                  88999************************976 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.042
    PF13857.1  19 pLhlAakggalevvrlL 35 
                     +A++ g+ evv++L
  MMETSP0890-20130614|32223_1 203 IMAMACYEGRDEVVDWL 219
                  5679************9 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.015        40       8      30 .]      21      44 ..      16      44 .. 0.88
   2 ?    2.6   0.0     0.072     2e+02       2      29 ..      50      84 ..      49      85 .. 0.59
   3 ?    3.0   0.0     0.054   1.5e+02       1      12 [.      89     100 ..      89     113 .. 0.79
   4 ?    4.7   0.0     0.015        40       2      25 ..     123     146 ..     122     151 .. 0.87
   5 !   11.0   0.0   0.00014      0.37       1      28 [.     156     183 ..     156     185 .. 0.92
   6 ?    3.5   0.0     0.037     1e+02       8      21 ..     206     219 ..     202     225 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.015
    PF13606.1  8 lAasngrielveaLlen.gadina 30
                  A++ +ri l++ L+++ g+din+
  MMETSP0890-20130614|32223_1 21 NAIEAKRITLLSKLVSKeGVDINM 44
                 59999**********9889***95 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.072
    PF13606.1  2 GnTpLhlAas.ngr.....ie.lveaLlengadin 29
                 G+T+ h+ +  +g      +e ++++ l+ g+d++
  MMETSP0890-20130614|32223_1 50 GETAAHVCVIlCGAlndvgYEtVLRLILRMGCDPS 84
                 88999965442554335565614566667799986 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.054
    PF13606.1   1 nGnTpLhlAasn 12 
                  +G Tp hlAa++
  MMETSP0890-20130614|32223_1  89 DGSTPAHLAARF 100
                  688*******96 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.015
    PF13606.1   2 GnTpLhlAasngrielveaLleng 25 
                  G+ p h+ a  g+++ +++Ll +g
  MMETSP0890-20130614|32223_1 123 GYAPAHICAAWGKTASIKWLLTYG 146
                  66788****************998 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 0.00014
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                  nG ++ + Aas g++e ++ L e ga +
  MMETSP0890-20130614|32223_1 156 NGMSLAMFAASAGHLETLKCLKELGAEL 183
                  799999*******************986 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.037
    PF13606.1   8 lAasngrielveaL 21 
                  +A++ gr e+v++L
  MMETSP0890-20130614|32223_1 206 MACYEGRDEVVDWL 219
                  8***********95 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.15   4.1e+02       2      29 ..      50      84 ..      49      86 .. 0.76
   2 !    8.3   0.0   0.00068       1.9       1      25 [.      89     113 ..      89     121 .. 0.82
   3 !    7.4   0.0    0.0014       3.7       2      25 ..     123     146 ..     122     148 .. 0.92
   4 !   10.7   0.0   0.00012      0.32       1      29 [.     156     184 ..     156     186 .. 0.90
   5 ?   -0.7   0.0       0.5   1.4e+03       8      21 ..     206     219 ..     204     220 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.15
                 SCBHHHHHHHTT.......HHHHHHHHHHTTSSTT CS
   PF00023.25  2 GfTPLHlAalrg.......nlevvklLlsqGAdln 29
                 G+T+ H++++         +  v++l l  G+d+ 
  MMETSP0890-20130614|32223_1 50 GETAAHVCVILCgalndvgYETVLRLILRMGCDPS 84
                 77888888777777777878888888888998885 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00068
                  TSCBHHHHHHHTTHHHHHHHHHHTT CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqG 25 
                  dG TP HlAa+   ++++ lL +  
  MMETSP0890-20130614|32223_1  89 DGSTPAHLAARFELTSCLALLREFS 113
                  8***********9999999996655 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0014
                  SCBHHHHHHHTTHHHHHHHHHHTT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqG 25 
                  G+ P H++a +g +  +k+Ll +G
  MMETSP0890-20130614|32223_1 123 GYAPAHICAAWGKTASIKWLLTYG 146
                  77899****************998 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00012
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdln 29 
                  +G++  + Aa+ g+le +k+L + GA+l 
  MMETSP0890-20130614|32223_1 156 NGMSLAMFAASAGHLETLKCLKELGAELS 184
                  6777789*******************986 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 0.5
                  HHHHTTHHHHHHHH CS
   PF00023.25   8 lAalrgnlevvklL 21 
                  +A++ g+ evv +L
  MMETSP0890-20130614|32223_1 206 MACYEGRDEVVDWL 219
                  69*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       721  (0.0527355); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 1217.20
//
Query:       MMETSP0890-20130614|32225_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 896.70
//
Query:       MMETSP0890-20130614|32226_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.95
# Mc/sec: 1220.88
//
Query:       MMETSP0890-20130614|32238_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        94  (0.00687537); expected 273.4 (0.02)
Passed bias filter:                       93  (0.00680222); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.61
# Mc/sec: 180.71
//
Query:       MMETSP0890-20130614|32240_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-16   59.5   0.2      3e-16   59.1   0.1    1.2  1  PF00365.15 Phosphofructokinase
  ------ inclusion threshold ------
      0.068   12.7   0.1        1.5    8.3   0.0    2.2  2  PF13439.1  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> PF00365.15  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.1   4.4e-20     3e-16     103     226 ..       2     135 ..       1     149 [. 0.87

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 4.4e-20
                  ------HHHH.H--.....--EE-----TT---TT-SS----HHHHHHHHHHHH..HHHHHHHHTT-EEEEEE-------HHHH-----.---EEEBTTS-...--HHHHHHHHHHHHH----SEEEEEE----- CS
   PF00365.15 103 GsltGakllteehg.....lnivglvGtiDnDlsgtDatiGfdtalervveaiD..kirdtasshervfvvevmGrhcgdlalvagiag.gadvivipeae...kseeelverlkksrergkrsaivivaegvid 226
                  G+ +Ga ++ ee       +++ g++ tiDnD+   D   Gf ta++ +  ai   ++++t +  + + +v++mGr +g+la +a++a+   d+ ++pe +   +  + + +++++   ++k +a+++vaeg+ +
  MMETSP0890-20130614|32240_1   2 GTHRGAYKISEECHnrglrISVAGIPKTIDNDIGLIDRSFGFMTAVSEATRAIAaaRVEATCNKPNGIGIVKLMGRSAGFLAAYATLASqDVDLCLVPEIPivlHGPHGILSHIDHV-LEQKGHAVIVVAEGAGE 135
                  889999999988778888899******************************996337899***************************98358*********8766677888888765.567999********976 PP

>> PF13439.1  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.016   1.1e+02      13     101 ..       2      92 ..       1     118 [. 0.70
   2 ?    8.3   0.0   0.00022       1.5      25      47 ..     119     142 ..     111     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.016
    PF13439.1  13 GvervvlelaealarrGheVtvv.apevgepleeelvvevvrvpglsfkralrsiafasalrrllkkeefDlvHvnsaaalalallall...k 101
                  G +r ++ + e+ ++rG +++v+  p++ +        +    ++ +   a r ia a+  +   k++ + +v+  +++a +la+ a+l   +
  MMETSP0890-20130614|32240_1   2 GTHRGAYKISEECHNRGLRISVAgIPKTIDNDIGL--IDRSFGFMTAVSEATRAIAAARVEATCNKPNGIGIVKLMGRSAGFLAAYATLasqD 92 
                  78888999999999999999998777777777777..66666666677777777777777777777777777777777777777766666661 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00022
    PF13439.1  25 larrGheVtvvapevgepleee.l 47 
                  l ++Gh V+vva+ +ge+l+ e +
  MMETSP0890-20130614|32240_1 119 LEQKGHAVIVVAEGAGEELLGEsT 142
                  889*****************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.43s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 893.78
//
Query:       MMETSP0890-20130614|32243_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-29  102.5   0.3    9.5e-16   57.4   0.0    2.5  2  PF01380.17 SIS domain
     0.0074   15.8   0.1       0.06   12.9   0.0    2.4  2  PF10432.4  Bacterial phospho-glucose isomerase C-terminal region
  ------ inclusion threshold ------
      0.057   12.3   0.0       0.13   11.1   0.0    1.6  1  PF03298.8  Stanniocalcin family


Domain annotation for each model (and alignments):
>> PF01380.17  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   6.3e-15   2.9e-11       5     126 ..     165     285 ..     161     290 .. 0.89
   2 !   57.4   0.0   2.1e-19   9.5e-16       2     128 ..     385     514 ..     384     517 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 6.3e-15
                  SSEEEEEE---THHHHHHHHHHH.HHHHSSEEEEEEHHH.CCHT.TGG-STTCEEEEEE-SCCCHHHHHHHHHHHHTT-EEEEEESTTTSHHHHHSSEEEEEEEEHHCGHHHSHHHHHHHHHHH CS
   PF01380.17   5 akriylvGaGtsyaiAlelalkl.eeiggivvevedase.lrhgplalvdpddlvilisqsgetkelveaaellkergakiiaitdsansplareadltlyinaepeagvastksltlqlalld 126
                   +++++vG+Gts  + l++a  + +  +   ++v+da+e  +++ +++++++  ++++sqsgetk++ + ++++ e g++  +i ++ +s +ar ++l +y  a++e  vastk++t+q ++  
  MMETSP0890-20130614|32243_1 165 IRNLVIVGCGTSLNASLYGAKLMrDLGAFDTAAVHDAAEiDVTD-IPPNEAG--LLAVSQSGETKDVARCLKYAEEAGCTAFSIVNTVGSLIARTTKLGVYCYAGRENAVASTKAFTTQVTVMA 285
                  57899******************677777799999999944444.7777777..6789*************************************************************98765 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 2.1e-19
                  HHTSSEEEEEE---THHHHHHHHHHHHHHHSSEEEEEEHHHCCHT.TGG-STT....CEEEEEE.-SCCCHHHHHHHHHHHHTT-EEEEEESTTTSHHHHHSSEEEEEEEEHHC.GHHHSHHHHHHHHHHHHH CS
   PF01380.17   2 lskakriylvGaGtsyaiAlelalkleeiggivvevedaselrhgplalvdpd....dlvilis.qsgetkelveaaellkergakiiaitdsansplareadltlyinaepea.gvastksltlqlalldal 128
                  l +a++i+++G+G++ +iA+e+alk++e ++i++e+   ++++hgp+al+++d    ++vi+i    ++++ +  aae+lk+r+a++ +itd  +  la+  d    i+  ++  + a++ +l+lq+++++++
  MMETSP0890-20130614|32243_1 385 LQSAQHIFILGKGYAEPIAREGALKIKECSYIHAEGLSGGAMKHGPFALISEDkekrTPVIMIIlDDEHAPNMRTAAEELKARDARVHIITD--DRRLAKGLDDSPIIIP-RNGrLTALIAVLPLQFIAYELA 514
                  67899*********************************************9865555899999945556667777777************95..4455555543333333.3334777888888887777765 PP

>> PF10432.4  Bacterial phospho-glucose isomerase C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.57   2.6e+03      86     122 ..     223     259 ..     195     263 .. 0.77
   2 !   12.9   0.0   1.3e-05      0.06       9     142 ..     379     522 ..     373     529 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.57
                  HHHHHHHHHHHH...----EEE---S---....-HHH CS
    PF10432.4  86 edkrradaveeiaedagvrvseveaeggsplerlasl 122
                   +++ ++ + ++ae+ag  + ++    gs ++r  +l
  MMETSP0890-20130614|32243_1 223 GETKDVARCLKYAEEAGCTAFSIVNTVGSLIARTTKL 259
                  3346677778888888999999999999988887665 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.3e-05
                  HHHHHHHTT..--EEEEEGGG---HHHHHHHHHHTT----EEEEETGGGGTTT----S-........EEEEE-TTS-HHH.......HHHHHHHHHH...----EEE---S...............---....-HHHHHH..---HHHHHHHH----SS CS
    PF10432.4   9 keLaselag.tiPvvygselteaaArRfknqlnenAKipavsealpEanhneivglegpeeperrlrlvllrdkedeped.......krradaveeiaedagvrvseveae...............ggsplerlaslial..lDfaSvylAlargvDPe 142
                   +La+ l+  +   ++g+  +e++Ar  + +++e + i+a   +   ++h+  +++++    e+r  ++++  + ++  +                  + +++rv  ++ +                +++l     lia+  l f++++lA+ rg+DP 
  MMETSP0890-20130614|32243_1 379 AKLAESLQSaQHIFILGKGYAEPIAREGALKIKECSYIHAEGLSGGAMKHGPFALISED--KEKRTPVIMIILDDEHAPNmrtaaeeL----------KARDARVHIITDDrrlakglddspiiipRNGRL---TALIAVlpLQFIAYELAIRRGIDPD 522
                  6899999994444556669**************************************99..666666666655555555523455551..........444444444444433444442212221155545...45554422589*************6 PP

>> PF03298.8  Stanniocalcin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05      0.13      37      60 ..     223     246 ..     196     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.9e-05
    PF03298.8  37 qssadvarCLnsalqvGCgvfaCl 60 
                   ++ dvarCL+ a + GC++f+ +
  MMETSP0890-20130614|32243_1 223 GETKDVARCLKYAEEAGCTAFSIV 246
                  4688*****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:01.09
# Mc/sec: 1174.00
//
Query:       MMETSP0890-20130614|32251_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   11.4   1.8       0.24   11.3   1.3    1.1  1  PF01682.14 DB module


Domain annotation for each model (and alignments):
>> PF01682.14  DB module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.3   1.8e-05      0.24       1      51 [.       5      57 ..       4      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
   PF01682.14  1 CCeakkvpeeClq..lCsfettksllrlaikeeecelkalkkileCaaqgrdh 51
                 C  a  v ++C    +C  e+t+ ++++++k+++ ++++ +++ +C+++ +d 
  MMETSP0890-20130614|32251_1  5 CADAAIVLQHCVAslICPTEATEFQKAATAKDSQKTQESYAAMDSCLSRFSDL 57
                 444455999**98899******9999999999999999**********98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 213.73
//
Query:       MMETSP0890-20130614|32256_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-09   36.2   0.0    9.2e-09   35.0   0.0    1.7  1  PF08234.7  Chromosome segregation protein Spc25
  ------ inclusion threshold ------
      0.035   12.7   0.2      0.034   12.8   0.1    1.2  1  PF07748.8  Glycosyl hydrolases family 38 C-terminal domain
      0.046   13.3   4.0      0.079   12.5   2.7    1.5  1  PF10805.3  Protein of unknown function (DUF2730)
       0.11   12.5   3.5       0.18   11.9   2.5    1.3  1  PF00479.17 Glucose-6-phosphate dehydrogenase, NAD binding domain
        1.5    8.6   4.7       0.86    9.3   0.1    2.5  3  PF12862.2  Anaphase-promoting complex subunit 5
        2.3    5.8   6.6          3    5.4   4.6    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        2.8    6.1   6.1        3.9    5.6   4.2    1.3  1  PF03961.8  Protein of unknown function (DUF342)
        4.5    4.5   5.8        6.1    4.1   4.0    1.1  1  PF05478.6  Prominin


Domain annotation for each model (and alignments):
>> PF08234.7  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.4e-12   9.2e-09       6      74 .]     138     210 ..     135     210 .. 0.92

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 5.4e-12
                  ---EEEEE-S-BTTBSSS-EEEEEE-SS.S-EE---.-----..---HHHHHHHHH---HHHHHHHHHHHHHC CS
    PF08234.7   6 gdklkfvFtnidpkdpdrefsftLdlse.dqYevvd.cdPkl..ealeelveelnktndlrkFlkevRkaFka 74 
                  +++l + F  +dp +p+r f+  L++++ dqY +   ++P l    l++l+  ln++n++++F+  +R+aFk+
  MMETSP0890-20130614|32256_1 138 TNSLCLSFYLLDPVEPERRFYAYLSVDQyDQYYLNGpTKPALpaILLNDLLISLNQKNHFGTFVAALRRAFKD 210
                  57799************************888886449*****999*************************85 PP

>> PF07748.8  Glycosyl hydrolases family 38 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-05     0.034      44     135 ..      25     139 ..       2     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
                  EEEE---S-EEEEEEEEE-----EEEEEEE-SS--TT..EEE-EEE.........---E--..-EEEE--.---EEEEESSSSS-EEE.......EEEEEEEE--..........- CS
    PF07748.8  44 gksrnstakyellflaelpplgyktyeikkerkeeevniltsekde.........vvqleNsylklefdentGllksiydkengrevlke.....vdqeflfYed..........i 135
                     r +++++e+  l+++ +++++ ++  +e ++++++i ++ k++         ++++e+s  ++e ++  +l +si+  +++r++l+e      +  + fY++           
  MMETSP0890-20130614|32256_1  25 EVARRDAEQFEKEMLEKIDAVSFQGFRELEEVDNSFKDIMQRVKNLhserskqreIYKMETSIQQIENEKL-NLESSIRYLAHERKLLEEnsvkkKNHSLEFYSKlgldlypdgtN 139
                  4568899*************************************99*********9999999999999998.99999999999999999899998888888888766555555550 PP

>> PF10805.3  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.7   4.6e-05     0.079      37     105 ..      53     118 ..      33     120 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.6e-05
    PF10805.3  37 veklvekieendkrlseletkleslPt....akdvhaLkieltelrGelkelsaqiqslshqleLLLEkelkk 105
                  +e++       d++ + +  ++++l +    + ++ ++++ +++++ e   l+ +i+ l h  +LL E+ +kk
  MMETSP0890-20130614|32256_1  53 LEEV-------DNSFKDIMQRVKNLHSerskQREIYKMETSIQQIENEKLNLESSIRYLAHERKLLEENSVKK 118
                  3444.......44444444455444431111789*************************************76 PP

>> PF00479.17  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.5    0.0001      0.18      34     123 ..      24     116 ..      12     128 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0001
                  E---SS--SCTTTHTTTS--TT-........-GGGHHHHHHHHTTB------TS-HHHHHHHHHHHHHS--..---SEEEEEE-S-HHHHHHHHH CS
   PF00479.17  34 vgvarselsdeefrekvkealkk.....vakeeedeekleeflerlsYvsgdvddeesykeLkeeleelekkaktkgnrlfYlalppsvfeevve 123
                  v var++   e+f++++ e++++     +++ ee +++++++++r++ ++ + ++++++ ++++++++ e+++ + +  + Yla   ++ ee   
  MMETSP0890-20130614|32256_1  24 VEVARRD--AEQFEKEMLEKIDAvsfqgFRELEEVDNSFKDIMQRVKNLHSERSKQREIYKMETSIQQIENEKLNLESSIRYLAHERKLLEENSV 116
                  4445554..45666777666666665569999999************************************988**********99998887655 PP

>> PF12862.2  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0005      0.86      55      76 ..      11      32 ..       2      48 .. 0.78
   2 ?   -2.7   0.1       2.8   4.9e+03       2      25 ..     122     145 ..     121     169 .. 0.66
   3 ?    0.4   0.0       0.3   5.1e+02       6      35 ..     188     219 ..     183     230 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0005
    PF12862.2 55 ghaeeAlkaleeairlArenkD 76
                 ++ ++Al++l+ea+++Ar  ++
  MMETSP0890-20130614|32256_1 11 DDSKKALDRLQEAVEVARRDAE 32
                 56789*************8765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.8
    PF12862.2   2 llsylnalrakdYqqaldsLhryF 25 
                   l++  +l+ + Y++ ++sL+  F
  MMETSP0890-20130614|32256_1 122 SLEFYSKLGLDLYPDGTNSLCLSF 145
                  567777777777888888887776 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.3
    PF12862.2   6 lnalrakdYq.qaldsLhryF.Dyvlsqness 35 
                  l +l++k+++ + + +L r F D v+s++++ 
  MMETSP0890-20130614|32256_1 188 LISLNQKNHFgTFVAALRRAFkDLVTSSSSTA 219
                  56666665541567889999966655555443 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.6    0.0018         3      27     102 ..      47     120 ..      10     133 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0018
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  27 vnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelnelee 102
                  ++ +r+l+ev+ +++ +++ +k++ +e +++ e   ++ ++ ++++e+e  +le+ ++ +    + Le++  ++++
  MMETSP0890-20130614|32256_1  47 FQGFRELEEVDNSFKDIMQRVKNLHSERSKQRE--IYKMETSIQQIENEKLNLESSIRYLAHERKLLEENSVKKKN 120
                  466788888888888888888888888874444..44444457888888888888888888888888887666554 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.2    0.0023       3.9     341     409 ..      51     119 ..       8     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0023
    PF03961.8 341 eeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeeleskk 409
                  +elee+ ++ +++ +++k l +++ +++   +++ ++++++++k +l+++++ l +e+k l+e+  +kk
  MMETSP0890-20130614|32256_1  51 RELEEVDNSFKDIMQRVKNLHSERSKQREIYKMETSIQQIENEKLNLESSIRYLAHERKLLEENSVKKK 119
                  678888888888888888888888888888889999999999999999999999999998887765553 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   4.0    0.0036       6.1     593     689 ..      14     113 ..      10     128 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0036
    PF05478.6 593 rknLeklae.sgvsdinfskflkqlkkeltevnLnslaeeLeelanalsegk.lkkelkneakdlrslqq..nlveplesllekLnssvksLdekssklqe 689
                  +k L  l+e + v++ ++++f k++ ++++ v+ + + +eLee+ n+++    + k+l+ e ++ r++++    ++++e+   +L+ss++ L ++++ l+e
  MMETSP0890-20130614|32256_1  14 KKALDRLQEaVEVARRDAEQFEKEMLEKIDAVSFQGF-RELEEVDNSFKDIMqRVKNLHSERSKQREIYKmeTSIQQIENEKLNLESSIRYLAHERKLLEE 113
                  4444444431355555566666666666666666555.456666666555443445555555555555542234555555555555555555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1234  (0.0902575); expected 273.4 (0.02)
Passed bias filter:                      565  (0.0413253); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.44s 00:00:01.10 Elapsed: 00:00:00.88
# Mc/sec: 732.52
//
Query:       MMETSP0890-20130614|32259_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 410.34
//
Query:       MMETSP0890-20130614|32262_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-31  108.3   6.1    1.5e-11   44.1   0.0    6.3  7  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    9.5e-24   82.3  12.8    1.5e-07   30.6   0.2    4.4  4  PF13540.1  Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00088         6      24      51 .]      30      55 ..      24      55 .. 0.87
   2 !   36.8   0.2   4.4e-13     3e-09       1      51 []      58     106 ..      58     106 .. 0.98
   3 !   44.1   0.0   2.2e-15   1.5e-11       1      51 []     109     156 ..     109     156 .. 0.97
   4 ?    3.0   0.0     0.015     1e+02       2       9 ..     160     167 ..     159     175 .. 0.82
   5 !   13.2   0.1   9.9e-06     0.068      22      50 ..     190     219 ..     185     220 .. 0.91
   6 ?   -2.5   0.0      0.79   5.4e+03      19      33 ..     234     248 ..     224     253 .. 0.60
   7 ?    0.7   0.0     0.084   5.8e+02      31      50 ..     297     316 ..     294     317 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00088
                 --S-EE-GGG------EEE-----EEEE CS
   PF00415.13 24 vlvPvkveglsgvrvvqvacGgsHtlal 51
                  l P++++  s+  ++ v cG+  tl+l
  MMETSP0890-20130614|32262_1 30 TLLPKLLPIDSR--AKNVHCGAGITLVL 55
                 678999999999..***********986 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 4.4e-13
                  TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                  dG+++s G+n+yGq G+g+++  v +P+++++ +g  +vq+a G +H lal
  MMETSP0890-20130614|32262_1  58 DGSLWSYGCNEYGQAGIGKTSTCVYKPQRLPLYNG--IVQAALGLRHGLAL 106
                  8**********************************..***********997 PP

  == domain 3    score: 44.1 bits;  conditional E-value: 2.2e-15
                  TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                  +G+VysWG+n++GqLG +g+ e+ + P k   l+   +++va+G sH++al
  MMETSP0890-20130614|32262_1 109 KGQVYSWGKNQNGQLG-NGNIEETTAPDKSLDLPQ--IKAVAAGFSHSAAL 156
                  59**************.******************..************97 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.015
                  TEEEEE-- CS
   PF00415.13   2 GrVysWGr 9  
                  G+V+ WG+
  MMETSP0890-20130614|32262_1 160 GEVFVWGK 167
                  9******5 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 9.9e-06
                  ----S-EE-GGG--.----EEE-----EEE CS
   PF00415.13  22 envlvPvkveglsg.vrvvqvacGgsHtla 50 
                  ++ + P+++++++g +++++ ac + Ht++
  MMETSP0890-20130614|32262_1 190 SDATRPRQLQFPPGtPPITHLACSALHTVV 219
                  57789***********************98 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 0.79
                  -------S-EE-GGG CS
   PF00415.13  19 gseenvlvPvkvegl 33 
                   + ++ + P+++ ++
  MMETSP0890-20130614|32262_1 234 HTRDMISEPRRLVTP 248
                  445566667776665 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.084
                  GGG------EEE-----EEE CS
   PF00415.13  31 eglsgvrvvqvacGgsHtla 50 
                   +++g r ++++ G+ H  a
  MMETSP0890-20130614|32262_1 297 DSPQGHRLTDITLGWKHQHA 316
                  5688899**********776 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.1   2.1e-08   0.00014       4      30 .]      45      71 ..      42      71 .. 0.95
   2 !   30.6   0.2   2.3e-11   1.5e-07       1      30 []      93     122 ..      93     122 .. 0.95
   3 !   25.7   0.0     8e-10   5.4e-06       1      24 [.     143     166 ..     143     175 .. 0.88
   4 !   10.5   0.1   4.9e-05      0.33       1      25 [.     207     231 ..     207     234 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.1e-08
                 EE-----EEEE-.---EEEE---TTST CS
    PF13540.1  4 vsaGgyHtcaLtsdGaVlcWGsNssGQ 30
                 v +G+  t++L +dG+++++G+N++GQ
  MMETSP0890-20130614|32262_1 45 VHCGAGITLVLGEDGSLWSYGCNEYGQ 71
                 88************************9 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 2.3e-11
                  --EEE-----EEEE-.---EEEE---TTST CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                  +v+ + G +H +aL++ G+V++WG N +GQ
  MMETSP0890-20130614|32262_1  93 IVQAALGLRHGLALDAKGQVYSWGKNQNGQ 122
                  688899***********************9 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 8e-10
                  --EEE-----EEEE-.---EEEE- CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWG 24 
                  +++v+aG +H+ aL + G+V+ WG
  MMETSP0890-20130614|32262_1 143 IKAVAAGFSHSAALSEQGEVFVWG 166
                  789********************* PP

  == domain 4    score: 10.5 bits;  conditional E-value: 4.9e-05
                  --EEE-----EEEE-.---EEEE-- CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGs 25 
                  ++++++ + Ht++ ++ G++++ G 
  MMETSP0890-20130614|32262_1 207 ITHLACSALHTVVMDAQGDIWAMGL 231
                  6899*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.90
# Mc/sec: 886.65
//
Query:       MMETSP0890-20130614|32265_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.066   12.2   0.7        2.1    7.3   0.2    2.3  2  PF01497.13 Periplasmic binding protein


Domain annotation for each model (and alignments):
>> PF01497.13  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2   0.00015       2.1      77     127 ..      81     130 ..      67     131 .. 0.90
   2 ?    2.9   0.0    0.0032        44      27      93 ..     160     228 ..     151     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00015
   PF01497.13  77 eellelgipvvavessstaeslleqirllgellgeedeaeelvaelesrid 127
                   ++++++++vv++e   + ++ + +  +l  l+g+e++ ee+++ +e++i 
  MMETSP0890-20130614|32265_1  81 PKEESKDATVVEDEKAVI-DDTTISTSVLTKLIGTESRIEEIIQVYETEIL 130
                  6899***********998.***************************99985 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0032
   PF01497.13  27 ktrdpldaekkpal.siaevgadreidiEklaalkPDlvivsafg.alvseieellelgipvvavesss 93 
                  ++++ + ++kk a+  i+ + +d+e d  k+a+ + D ++      +lv+++e++l++ +p v ves +
  MMETSP0890-20130614|32265_1 160 SDSNSSSSKKKSAAsRIFGFVDDSESDDHKIATSQLDNLFDHVCTeKLVDAAERRLSESAPLVLVESIQ 228
                  444555555555555788888888888888888888888765555789***************999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       515  (0.0376682); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.97
# Mc/sec: 706.55
//
Query:       MMETSP0890-20130614|32275_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-34  118.9   0.0    2.9e-34  118.4   0.0    1.3  1  PF11927.3 Protein of unknown function (DUF3445)
     0.0054   15.4   0.0     0.0079   14.8   0.0    1.2  1  PF10995.3 Protein of unknown function (DUF2819)


Domain annotation for each model (and alignments):
>> PF11927.3  Protein of unknown function (DUF3445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   4.2e-38   2.9e-34      91     246 ..      95     253 ..      27     256 .. 0.81

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 4.2e-38
    PF11927.3  91 d....tlpeepletlgrlvqeDllillkneedgeyvleagavcfpagwslreklgkplseiHgpVpgykekleksmdrffarlkpgkpveRvNwsiqtdsklfvsdenkheeeeeee.ktkeeekdgedlhlRvErQtLrrLpksgavvFtirtyllplee 246
                         ++ ple ++r+v +Dl++l ++  ++  ++ a++v+f+ g +l +klgk+l++iH+pVpgy+  l+k +d+ff+rl+p+kp +R+N+ + ++ +l +++ + ++ +++ + ++  +++++++++lR E QtLrrLp+s+ ++Ft+   + p++ 
  MMETSP0890-20130614|32275_1  95 AdqdiVEKRRPLESAARIVADDLILLRQE-GKNPAIMCAATVVFSFG-QLYDKLGKTLEAIHNPVPGYHRWLKKPLDNFFQRLEPSKPFRRSNFELRWSGELIHPSLTSGHLDRKGQlEDIGDKENIHNIYLRAEIQTLRRLPHSNFILFTVDSLTDPISS 253
                  02223455669****************99.**************999.99*******************************************************9666666655566788899999************************9988888876 PP

>> PF10995.3  Protein of unknown function (DUF2819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-06    0.0079      64     116 ..      81     141 ..      40     153 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.2e-06
    PF10995.3  64 e....kasDedrvlvsrsvleeatklpeewqlvednealv.aaaet...aqaAtvvlsltq 116
                  +     + De+r+++ ++++e+ ++l    ++v d   l+ +++++   + aAtvv+s+ q
  MMETSP0890-20130614|32275_1  81 TfyyqGRRDEQRLFADQDIVEKRRPLESAARIVADDLILLrQEGKNpaiMCAATVVFSFGQ 141
                  12333689******************8888877666655516666666678*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:01.45
# Mc/sec: 477.62
//
Query:       MMETSP0890-20130614|32266_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-54  183.7   5.1    5.5e-54  183.4   3.6    1.1  1  PF00209.13 Sodium:neurotransmitter symporter family
  ------ inclusion threshold ------
      0.073   12.5   0.6       0.16   11.4   0.4    1.5  1  PF04810.10 Sec23/Sec24 zinc finger


Domain annotation for each model (and alignments):
>> PF00209.13  Sodium:neurotransmitter symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4   3.6     8e-58   5.5e-54     267     518 ..       1     262 [.       1     266 [. 0.90

  Alignments for each domain:
  == domain 1    score: 183.4 bits;  conditional E-value: 8e-58
   PF00209.13 267 GvlialasYnkfennvyrdallvslinsltsvlaglvvFsvlGfmaeeqgekisevaeeGpgLaFiaypealtklplsplwsvlFFlmlillgldsqfgtvegiitavvDe..fkvllr......rrelltlivavlaflvglllvtegGiyvltlldkyaaslsllvvvlleaiavawvyglkkflddikemlgfrpllflklcwkfvspllllvlliasivkl...kpltynayvyPkwaealgwllalssvlviplvvil 518
                  G l+a++sYn+ +++v +d++ ++l+ns+ts++ag+++Fs+lG++a+  g+++s+v ++G gLaF+ayp+ l+ lp + +w ++FF+ l  l+lds+++ +e+ it ++D   f+ +++       re+ ++  +++ f+v+l+++t+ Giy+++l+d+ +  +++ +v+++e+  va ++g+k+f +++++m g r+ +++ +cw++++p+++++l ++s+      k+++y+       a  +++ll+l  +++i + +i+
  MMETSP0890-20130614|32266_1   1 GQLVAFGSYNTPNEDVVFDSVAIALLNSFTSLFAGIAIFSMLGHKAKRDGVRVSDVVDSGEGLAFVAYPDGLSALPGAGIWCFIFFITLFSLALDSSMALLEAWITMLADLgiFNDTKTaqlnhnYREFGVFSSCLFGFFVSLIFITRPGIYWFSLVDSVV-VWGVFAVAVAECYGVARIFGAKRFAEQLHRMAGRRVPNLILYCWSTITPIVCFFLGLISLGITlarKNPKYEGARATILARLVSLLLMLGPLIIITFGIIY 262
                  88*********************************************************************************************************998433333222334456899******************************865.79**************************************************9987776643324577888888888889999999999999998887765 PP

>> PF04810.10  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   2.3e-05      0.16      20      35 ..     266     281 ..     264     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.3e-05
   PF04810.10  20 eggkrWtCnlCgtrNe 35 
                  ++++ +tCn+C+++N+
  MMETSP0890-20130614|32266_1 266 DWKRIFTCNFCSNTNK 281
                  5789*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       758  (0.0554418); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.42s 00:00:01.15 Elapsed: 00:00:01.06
# Mc/sec: 911.07
//
Query:       MMETSP0890-20130614|32272_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    6.7   6.6         14    5.4   0.8    2.3  2  PF09644.5 Mg296 protein


Domain annotation for each model (and alignments):
>> PF09644.5  Mg296 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3    0.0027        37      36      53 ..     155     172 ..     148     176 .. 0.83
   2 ?    5.4   0.8     0.001        14      30      50 ..     179     199 ..     172     200 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0027
    PF09644.5  36 dtliiyedddyddqdffl 53 
                  +++i+ eddd ++ +f +
  MMETSP0890-20130614|32272_1 155 KKRIVIEDDDEEEEEFVF 172
                  679999*******99975 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.001
    PF09644.5  30 ilereqdtliiyedddyddqd 50 
                  ++++++++ ++  dddydd d
  MMETSP0890-20130614|32272_1 179 VVKKQESSTMMIVDDDYDDFD 199
                  667788888888999***975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:01.04
# Mc/sec: 465.45
//
Query:       MMETSP0890-20130614|32283_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.55
# Mc/sec: 248.35
//
Query:       MMETSP0890-20130614|32280_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-09   36.4   0.0    1.1e-08   35.3   0.0    1.5  2  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.38   5.2e+03       4      22 ..      73      91 ..      49     125 .. 0.70
   2 !   35.3   0.0   7.8e-13   1.1e-08     100     204 ..     179     285 ..     145     291 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.38
                 ---EEE-----HHHHHHHH CS
    PF05721.8  4 dGylviegflsaeevealr 22
                 +G+l+i+ +l  e+  +lr
  MMETSP0890-20130614|32280_1 73 QGVLHIPHALKRETASSLR 91
                 4555555555554444444 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 7.8e-13
                  S-----E.EEE-GGGTS-EE----EE-EEEESS-B-S----EEEE---------..........................-EEE----..............----.. CS
    PF05721.8 100 pkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae...ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNr 204
                   ++G   qp H D +  +   ++ + +  ial d++++ G++ f+P++H+++ g +    +++ ++      +e+  +  ++   + ++aGd+v+f+ r+lH ++aN+
  MMETSP0890-20130614|32280_1 179 TEPGSLRQPIHYDTPITQKK-TGPLYATFIALQDISRNMGPTTFLPYTHRYDAGKSNCPGRQEFDHGVsdgRRENFLANYANPCFALLQAGDLVIFDMRILHFGEANS 285
                  5678888**********955.47799999**********************888655544444444337666666667777777789******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       154  (0.0112639); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.89
# Mc/sec: 926.23
//
Query:       MMETSP0890-20130614|32298_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.3   0.1       0.02   14.1   0.0    1.0  1  PF10759.4 Protein of unknown function (DUF2587)


Domain annotation for each model (and alignments):
>> PF10759.4  Protein of unknown function (DUF2587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-06      0.02      42      87 ..       7      50 ..       2      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.4e-06
    PF10759.4 42 lleevraaPldeasrsrlkeihessikeledGlapelveelerlsl 87
                 ll+ev  a ld a+rs  +   +s ++e+   lapel ++ +r sl
  MMETSP0890-20130614|32298_1  7 LLDEVV-ASLDAAARSAYRPSGNSRVDEFLRKLAPELDDD-DRTSL 50
                 899995.68****************************775.56555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.74
# Mc/sec: 194.30
//
Query:       MMETSP0890-20130614|32306_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-41  139.8   0.1    9.4e-41  139.6   0.1    1.0  1  PF04305.9 Protein of unknown function (DUF455)


Domain annotation for each model (and alignments):
>> PF04305.9  Protein of unknown function (DUF455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.1   6.9e-45   9.4e-41     117     251 ..       4     141 ..       2     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: 139.6 bits;  conditional E-value: 6.9e-45
    PF04305.9 117 llserLeelgseyGdlpvhdgLweaaektaddllarlaivplvlEArGLDvnpaliekleaagdeesaeiLevIledEigHVaiGnrWfrwlcekegldpvetfrelv...rkyfrgklkgpfnaeaRrkAGlseeel 251
                  l ++ Le +g +yGdl++hd L e++ +t+dd+larl iv+lv+EArGLDv ++ +++l  agd+++a++Le  ++ EigHV++ + Wf +l e++gldp +tf+ ++    + +++ lk+pfn++aR++AGl+++++
  MMETSP0890-20130614|32306_1   4 LSTRLLEGYGTKYGDLEAHDTLAESMLATNDDILARLVIVHLVHEARGLDVFDMGRKRLVGAGDTSTAKVLEANYAQEIGHVKAMHSWFVTLAEHRGLDPRDTFAFHIrdpARWRAQGLKPPFNHQARAAAGLDQDWY 141
                  5567789**************************************************************************************************9995555667899*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.80
# Mc/sec: 497.24
//
Query:       MMETSP0890-20130614|32303_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.91
# Mc/sec: 1271.91
//
Query:       MMETSP0890-20130614|32317_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-52  176.4   0.0    5.4e-52  176.2   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.0   3.9e-56   5.4e-52       2     281 ..      41     326 ..      40     328 .. 0.93

  Alignments for each domain:
  == domain 1    score: 176.2 bits;  conditional E-value: 3.9e-56
   PF00248.16   2 lglGtwslgndeisedealellraaleaGinlfDtAeyYgkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslp...........................sieevlealeelkkeGkirhiGvSnfsveileka..kkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkd...aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalel.elseeeiaeidel 281
                  +g+Gt+     +++e e+   ++aal +G++l+DtA +Yg g+ e ++g+a+kk     ++ +i tK      +   +  e+ +e+l++sLkrl++d +Dlll+h+p p +                             + e+++a+e+   +G++++iGvSnfs+++l k+  + + + k++ +q+e +++  l++++l++ c+e+++ i ay  lgg   +     ++++      k    a++ ++ + +la+++ v++a++ l++al  +  +++ip+++s++++++n++ l+  +ls++e++ id l
  MMETSP0890-20130614|32317_1  41 VGIGTY-----KMKEGEVSTCVNAALAYGYRLIDTAYVYGGGKTESVIGKAIKK---IDQQPFIITKH-----WRAFHGYEETKECLRTSLKRLDVDSVDLLLMHWPGPGYSamgrskarieaegiqcyfkkghenienLRLETWRAMEDELLAGRCKAIGVSNFSADHLTKLlaWPELRFKPALIQIELHPY--LQQRDLINICKEHDIVIQAYASLGGQDSS----AKDWT------KLkqpALLEHPLITKLANKYSVDSAAILLAWAL--QHDIAIIPKSRSPSRIHANAQQLDSfQLSPDELSSIDDL 326
                  688888.....6788999999*********************************...99999999**9.....9****************************************************************999********************************99999***************..************************94222....11122......2223579**************************..88*********************666**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.80
# Mc/sec: 1042.42
//
Query:       MMETSP0890-20130614|32329_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 267.59
//
Query:       MMETSP0890-20130614|32332_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-18   66.1   0.0    3.3e-18   65.6   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    3.6e-09   36.7   2.6     0.0011   18.7   0.1    2.1  2  PF12697.2  Alpha/beta hydrolase family
    0.00018   20.6   0.3     0.0052   15.9   0.0    2.5  2  PF00326.16 Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.037   13.4   0.0    1.3  1  PF07859.8  alpha/beta hydrolase fold
      0.058   12.7   0.0       0.24   10.7   0.0    1.9  1  PF02230.11 Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.2e-21   3.3e-18       1     142 []      49     228 ..      49     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.2e-21
    PF12695.2   1 lvvlvhGaggdssayeplaealakr.gfavvavdlpghgasegaa.aakrvlaadll............dleriilvGhSlGGgvalelag....rddrvkglvllap..........f.........pdgedlakltlpvllihGtrDgvvppeeaeklakalp..gdaelvviegasHf 142
                  +++++h ++ d +   p+  +l+++  ++ +a+ ++g+ +s ++a   ++v  ad +             +++i l+G+S+G+g++++la+    r+ + +g+vl +p          f         p+ ++++ + +pvllihG++D+vvp  + ++l+ a p    ++ ++i+ a+H+
  MMETSP0890-20130614|32332_1  49 TILFSHANAEDITLIYPFLMELTRNcHVNALAYSYSGYARSRDRApSEADVY-ADIDaawdylvlmrgiAPDQILLYGRSIGSGPTVYLAErlahRQTPPAGIVLQSPllsifriafnFrytipgdlfPNIDRIRSVACPVLLIHGAKDEVVPIWHGQELWLATPltWRYKPFWIPSAGHN 228
                  69************9999999999989***********99955554666666.4444444455577778899*******************7765458999******98888776655155666666699***********************************6555666********6 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3     6e-07    0.0016       1     101 [.      50     157 ..      50     175 .. 0.77
   2 !   18.7   0.1   4.1e-07    0.0011     170     216 ..     179     228 ..     163     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6e-07
                  EEE------------HHHHHHTT..TSEEEEE-----------S...S--HHHH..HHHHHHHHHH--.--EEEE--------HHHHHH----....EEEEEEE---- CS
    PF12697.2   1 vvllHGlggsaeswrplaeaLaa..gyrvvapDlpGhGrSdrppdydpdtledl..aadlaalldalglrpvvlvGHSlGgavalaaaarrpd...lvrglvlidppg 101
                  +++ H++  + +   p++ +L +  +++ +a+++ G+ rS   ++ ++d ++d   a d++ l++ + ++++ l G S G   + ++a+r  +     +g+vl +p +
  MMETSP0890-20130614|32332_1  50 ILFSHANAEDITLIYPFLMELTRncHVNALAYSYSGYARSRDRAPSEADVYADIdaAWDYLVLMRGIAPDQILLYGRSIGSGPTVYLAERLAHrqtPPAGIVLQSPLL 157
                  68889999999999999999987245556***********887765555555441144555566777779******************77444445999999999866 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 4.1e-07
                  HHHTT--S-EEEEE-----HHHHHHHHHHHHHST.TE..EEEE---SSSS CS
    PF12697.2 170 ealarldvPvlviageaDrvvppeearrlaealp.ga..rvvvlpgagHl 216
                  ++++++ +Pvl+i+g++D+vvp ++ ++l+ a p  +  +  ++p agH+
  MMETSP0890-20130614|32332_1 179 DRIRSVACPVLLIHGAKDEVVPIWHGQELWLATPlTWryKPFWIPSAGHN 228
                  5677889***************9999999977664342245699999996 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.9e-06    0.0052      44     187 ..      99     227 ..      88     255 .. 0.61
   2 ?   -3.1   0.1       1.2   3.2e+03     101     140 ..     338     360 ..     323     375 .. 0.48

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.9e-06
                  HHHHHHHHHHHHHH-----GGGEEE------.--HHHHH..HHH-GGG---EEEE-----TTTGGGS-..---GGGGT---TTSHHH.HHHHHHH-GGG-------EEEEEETT-SSS-THHHHHHHHHHH..--S.EEEEEES---- CS
   PF00326.16  44 efdDfiaaaealakegyvdpdrlaitGgSyG.Gylvgaa..lnqrpdlFkaavaqvgvvdwltymsdtsllteaeymeygnpeeneegyeelspyspadnvkaypplllihGeeDdrvppaealklvaaLqkagkn.vlllifpdegH 187
                   ++D+ aa+++l+    + pd++ ++G S G G +v  a  l++r+   +++v q++ +   +       ++  +y+         + +    +++ +    + +p+llihG +D+ vp++++ +l   L    +  ++  + p +gH
  MMETSP0890-20130614|32332_1  99 VYADIDAAWDYLVLMRGIAPDQILLYGRSIGsGPTVYLAerLAHRQTPPAGIVLQSPLLSIFRIA-----FNF-RYTIP------GDLF---PNIDRIRS--VACPVLLIHGAKDEVVPIWHGQELW--LATPLTWrYKPFWIPSAGH 227
                  56777777777777777777777777777774333333322335666677777777776666652.....334.34433......3434...55566666..888*****************98765..3333333355556666666 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.2
                  TTTGGGS-..---GGGGT---TTSHHH.HHHHHHH-GGG- CS
   PF00326.16 101 wltymsdtsllteaeymeygnpeeneegyeelspyspadn 140
                    t++ d+                n e ye  s y+ + n
  MMETSP0890-20130614|32332_1 338 SETTDDDD----------------NGE-YESSSYYNIVSN 360
                  33333332................333.433333333333 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.037      20     110 ..      66     157 ..      51     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHTSEEEEEE--.......-TT.TS-TTHHHHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES--- CS
    PF07859.8  20 lcrrlakelgavvvsvdYr.......lAP.ehrfPaavedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyPgt 110
                  ++ +l++++++ +++  Y        +AP e+ + a ++   aa+ +l+      g+ p++i + G S G + + ++a r++ + ++ +a++vl +P+ 
  MMETSP0890-20130614|32332_1  66 FLMELTRNCHVNALAYSYSgyarsrdRAPsEADVYADID---AAWDYLVLM---RGIAPDQILLYGRSIGSGPTVYLAERLAHR-QTPPAGIVLQSPLL 157
                  666777777777777777654333333331333444444...444444444...3789********************999998.678*********65 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.7e-05      0.24     149     176 ..     177     206 ..     103     211 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.7e-05
   PF02230.11 149 satkva..kipilqlHgeeDevvplalgka 176
                  +  ++   + p+l++Hg +Devvp+ +g++
  MMETSP0890-20130614|32332_1 177 NIDRIRsvACPVLLIHGAKDEVVPIWHGQE 206
                  4444444578***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 1822.06
//
Query:       MMETSP0890-20130614|32345_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-37  127.3   0.0    6.9e-37  126.8   0.0    1.2  1  PF01988.14 VIT family
  ------ inclusion threshold ------
       0.11   12.2   0.0        0.2   11.3   0.0    1.4  1  PF08138.6  Sex peptide (SP) family


Domain annotation for each model (and alignments):
>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0     1e-40   6.9e-37       2     129 ..      42     171 ..      41     175 .] 0.96

  Alignments for each domain:
  == domain 1    score: 126.8 bits;  conditional E-value: 1e-40
   PF01988.14   2 lraaVlGlnDGlvstfalvaGlagaaassklvllaGlaglvAgaiSmalGeylsvkaerdleeaelereqqeverspegeveeladilkak.glseetaaqvaeeltakeda.ldfllkeelgleeests 129
                  ++++V+G++DG+++ fa+v++++ga+ s+ + l++Gla+++A++++m+ G+y+s++aer++ ++e ere++e+e++pegev+e++di+ ++ g++ ++a+ + + l +++   l++++++elgl ++++ 
  MMETSP0890-20130614|32345_1  42 VKSFVFGGLDGCITAFAVVSSASGASLSPGTTLVLGLANVFADGLAMGCGDYISERAEREYIRSEYEREKWELEHYPEGEVKEMRDIYTERfGVEDSDADTMLNLLLKYKPLfLETMAHFELGLLPPDSD 171
                  799*********************999*************************************************************************************************995444 PP

>> PF08138.6  Sex peptide (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     3e-05       0.2      14      42 ..      84     112 ..      72     113 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
    PF08138.6  14 vGlalsvewplnkrkdkssikgprdreKW 42 
                   Gla++    +++r ++++i+++ +reKW
  MMETSP0890-20130614|32345_1  84 DGLAMGCGDYISERAEREYIRSEYEREKW 112
                  599************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 566.71
//
Query:       MMETSP0890-20130614|32359_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   23.5   3.6    2.3e-05   23.0   2.5    1.2  1  PF00083.19 Sugar (and other) transporter
    3.5e-05   22.6  11.9    3.5e-05   22.6   8.2    2.0  2  PF07690.11 Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   2.5   3.3e-09   2.3e-05     242     436 ..     139     340 ..     116     352 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.3e-09
   PF00083.19 242 kelfsqktvrqrlligvvlqifqqltGinaimyYsptifetlglsks.........llvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaig............ggyvflvfagllvlfilfvfffv 436
                  +++fsq   + r ++++ l++f+  +++ a   +s+ +f+ +  + +         + +  + ++v  +++l a+ +vd+ GRR+l+  Gl++ a++ +++   + +l a +      aiv+     a+fa    +v +  ++El+p++ R++++++a a++ l+++l++ +f   + a +              yv +  a +++++  +v++  
  MMETSP0890-20130614|32359_1 139 QSIFSQ---QLRSTVCICLASFLAGSAYLASATLSSLLFARVVGERQvrscasvleYRGLALGSIVEAIASLAAARIVDK-GRRRLF-AGLSILAAFELLML--ACPLAALP-----KAIVAHVARGALFA--AVSVLFAFAPELYPTEARATGASCASACGKLGGALAAAIFVPNFAAPSaalrgetphaslSIYVTAPLALMAIAAACCVLLVP 340
                  455666...45778888888888888888888888888888776666687777765555566679999******999999.888666.56666666666665..34443332.....35777777788888..555666777*****************************999988888878888888766666666666655555555555544 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.7     0.024   1.6e+02      62      95 ..     147     178 ..     140     180 .. 0.80
   2 !   22.6   8.2   5.1e-09   3.5e-05      39     188 ..     196     352 ..     194     374 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.024
   PF07690.11  62 rrvlllglllfalglllllfasslwalllvlrvl 95 
                  r++++++l+ f++g+++l+ +++l+  ll++rv+
  MMETSP0890-20130614|32359_1 147 RSTVCICLASFLAGSAYLA-SATLS-SLLFARVV 178
                  6799999999999977777.35655.89999997 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 5.1e-09
   PF07690.11  39 tlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll..fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg............WravFlilailsllaavlvllllprepperkrkspaee 188
                  +l s++ aiasl a+r++d+ Grrr++    +l+a+ ll+l+  + + l+   +v+ v  G+   a++++  a++ +++p e r+ + +++sa+  lG +l+   +++++ ++              +++ ++ a+l+l+a+  + ++l+++  + + ++ +++
  MMETSP0890-20130614|32359_1 196 ALGSIVEAIASLAAARIVDK-GRRRLFAGLSILAAFELLMLAcpL-AALP-KAIVAHVARGALF-AAVSVLFAFAPELYPTEARATGASCASACGKLGGALA---AAIFVPNFAapsaalrgetphASLSIYVTAPLALMAIAAACCVLLVPTETARAPAFETK 352
                  5678889*************.999987777777776656666444.7788.6888888888885.7899999*********************999999888...44444444444467888998888889*****9999988655666666665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:01.11
# Mc/sec: 846.28
//
Query:       MMETSP0890-20130614|32360_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-36  124.7   0.0    3.3e-35  121.5   0.0    2.1  1  PF00481.16 Protein phosphatase 2C
    3.9e-10   39.3   0.0      1e-09   38.0   0.0    1.7  1  PF13672.1  Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0   4.8e-39   3.3e-35      31     253 ..     114     348 ..      64     351 .. 0.76

  Alignments for each domain:
  == domain 1    score: 121.5 bits;  conditional E-value: 4.8e-39
                  CCHHCCCHCCCHHHHHHHHHCHHHHHH.....HHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCC.......S.HTT---EEEEEEESSSEEEEEEE---EEEEEE---EE....EESS---STTSHH.HHHHHHH----EE-...T--EE---BSBSB----HHHC---ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHHHHHHH CS
   PF00481.16  31 kssvaffavfdghggreaakyarehle.....eilkerksfleleklekalrksfladtdeelkssean.......tepsksGstavvalirgqklyvAnvGDSravLcrsdnak....keltedHkpsned.EreRIeeaggsvsn...gngRvngsLavsRalGdfelkpkekeqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdeaiargs 253
                  k  v+  a+f + ++ +++++ ++ ++     ++ ++ ++ +e+  ++k + + f++ +++ ++   ++       t+p   G+ta v  + g +l +A+vGDSravL+ + n++      lt+dH++++ + E +R e+agg+v     g g   g+L+v+R++Gd+       + +v a+P++ ++k++e+d f+++asDG+wd l++q++vd + + l++  +p+ ++ +l++   + ++
  MMETSP0890-20130614|32360_1 114 KRLVQECAYFPEEASIQISDKSHSIMPssimpKVFERLQTQHES-IYKKEILEPFEK-ARKAFEE--EHgfsagpcTLPCEGGTTACVFRLEGPELSFAWVGDSRAVLAVRSNPHqfhaIPLTNDHNVERNQnEQKRCEDAGGQVLGrflGAGDADGMLQVTRSIGDTAHHA---SNIVLATPETITRKLTENDAFIVMASDGVWDFLDNQTVVDTIVEYLQQ-IDPTVLSPALIESTRSHAT 348
                  44455556666666666666666666643332222222222222.344444444444.3333333..22344566569*************************************999999*******97766************9666666666677*************8...78****************************************999996.4899888888887766665 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.5e-13     1e-09      21     198 ..      82     331 ..      71     343 .. 0.61

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 1.5e-13
    PF13672.1  21 dsdgwll..aVaDGaGsakrSdeGsrlaveaagealeell..........eeeeeq......eeallrailneilaevk...............lkaeaeaq....qe.elkdyatTlllavitpgeivffqiGDgaivvrd..rdgevql.lgepdsgeyanettfltsedaeeel.....................................rvrrlklepvdalllmTDGlsnslrdeeafapllkelleele 198
                  ++++ ++  aV+DG+G  ++  +G ++a++++ + ++e            +    +       + ++ ++ ++++++ +               ++ e+e +     +  + + +tT ++  + + e+ f+++GD+++v+      +++++ + ++d++   n+      eda+ ++                                      +r+l+ e    +++ +DG+++ l +++ + + + e+l++ +
  MMETSP0890-20130614|32360_1  82 KENRTIIsaAVCDGHGISRQHNWGDQIATRTVKRLVQECAyfpeeasiqiS----DkshsimPSSIMPKVFERLQTQHEsiykkeilepfekarKAFEEEHGfsagPCtLPCEGGTTACVFRLEGPELSFAWVGDSRAVLAVrsNPHQFHAiPLTNDHNVERNQNEQKRCEDAGGQVlgrflgagdadgmlqvtrsigdtahhasnivlatpetITRKLT-ENDAFIVMASDGVWDFLDNQT-VVDTIVEYLQQID 331
                  3444555559***************************99988855555443....044446633333344444444433566677888887665222222224443335777888888888899*************97655224455544345555544444422222222333333334444444444466666666666666799**9954444444.445667788*****8887655.4444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:01.93
# Mc/sec: 600.95
//
Query:       MMETSP0890-20130614|32366_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-06   26.2   0.9    9.9e-06   25.1   0.6    1.5  1  PF08507.5  COPI associated protein
     0.0064   15.9   4.7       0.32   10.4   0.1    2.2  2  PF04156.9  IncA protein
  ------ inclusion threshold ------
      0.011   15.2   0.6       0.03   13.9   0.4    1.8  1  PF05624.9  Lipolysis stimulated receptor (LSR)
        1.1    8.1   4.2          3    6.8   0.4    2.5  2  PF02038.11 ATP1G1/PLM/MAT8 family


Domain annotation for each model (and alignments):
>> PF08507.5  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6   2.9e-09   9.9e-06       8     108 ..      28     163 ..      19     201 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.9e-09
    PF08507.5   8 ivnivvgvllilagilqlikvlslk............siilsvYvIlfGlliillEfklki.lykyasFlfsflG.RGlfyiflgtlllss..........................svlsiiiglllflvGliyivlhfv 108
                  +++++++++l +a  ++l+++                ++ l  Y+++f++ i  +E+  +i + + +s l  f   RGlfy+f+g+l l++                          s++  +++  l+++G iyi+l++ 
  MMETSP0890-20130614|32366_1  28 VLSVMAAIMLSVAHAASLYSF---IvrrrdtqsrgavDVALRAYGLIFCATICSIEL--QIgINSNISILSRFWSlRGLFYAFVGLLALDNadsderrrdgdhhipaawredgfmpySLYLRCAAAALLILGSIYILLGLC 163
                  334444444444333333332...233445557788899******************..999**********9866*************9999999999999999999999999999999999999999999999999876 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.9    0.0012       3.9      30      70 ..      19      58 ..      14      95 .. 0.75
   2 !   10.4   0.1   9.3e-05      0.32      41      99 ..     146     196 ..     137     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0012
    PF04156.9 30 asslgvlisallgivliAlgvvLlalgllllllkapvqsee 70
                 + ++ v+is+l+++++i+l +v  a+ l++++ +++  +++
  MMETSP0890-20130614|32366_1 19 ILTFFVAISVLSVMAAIML-SVAHAASLYSFIVRRRDTQSR 58
                 566899***********97.666666677777766666655 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 9.3e-05
    PF04156.9  41 lgivliAlgvvLlalgllllllkapvqseedekieesrlqeelsesesqlseleeeleq 99 
                  +  +l++lg++ + lgl+ + ++++  s e +        ++l+e++ + +el++  ++
  MMETSP0890-20130614|32366_1 146 AAAALLILGSIYILLGLCWCHRCKETRSIEYR--------RKLAEAQVRKAELAQRRSE 196
                  6789999**********999999998885554........4888888888888877655 PP

>> PF05624.9  Lipolysis stimulated receptor (LSR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   8.8e-06      0.03       6      29 ..     149     170 ..     142     178 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.8e-06
    PF05624.9   6 llivvGallllllvgicwcqccPh 29 
                   l+++G+++  +l+g+cwc  c +
  MMETSP0890-20130614|32366_1 149 ALLILGSIY--ILLGLCWCHRCKE 170
                  688999987..678*****99965 PP

>> PF02038.11  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.027        93      14      27 ..      65      78 ..      63      85 .. 0.84
   2 ?    6.8   0.4   0.00088         3      22      48 ..     147     173 ..     144     175 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.027
                 HHH---HCHHHHTT CS
   PF02038.11 14 LRigGLifAgvLfi 27
                 LR  GLif + ++ 
  MMETSP0890-20130614|32366_1 65 LRAYGLIFCATICS 78
                 999*****998875 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00088
                  HHHHTT---TTTTCCHHHHHH-TTT-- CS
   PF02038.11  22 AgvLfivGiliilSgkcrCkfnqkqra 48 
                  A+ L i+G + il g c C + +++r+
  MMETSP0890-20130614|32366_1 147 AAALLILGSIYILLGLCWCHRCKETRS 173
                  78899**************99888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       822  (0.0601229); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 890.08
//
Query:       MMETSP0890-20130614|32371_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-15   56.9   5.2    1.9e-15   56.8   3.6    1.0  1  PF01925.14 Sulfite exporter TauE/SafE
     0.0067   15.3   0.7     0.0071   15.2   0.5    1.1  1  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.026   14.5   4.4       0.88    9.6   3.0    2.2  1  PF01169.14 Uncharacterized protein family UPF0016
      0.044   13.5   1.7       0.07   12.9   1.2    1.5  1  PF13515.1  Fusaric acid resistance protein-like


Domain annotation for each model (and alignments):
>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   3.6   5.5e-19   1.9e-15      19     108 ..       2      94 ..       1      99 [] 0.65

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 5.5e-19
   PF01925.14  19 ggliavPlLll.l.lpppvavatsllavlvtslvgalahrrkgnvdwrlllplllgallGallGallll.llpskllkllfgvlllllallml 108
                  gg i+vP+L+l   ++ ++ ++tslla+++t+++g+++h + g+++  ++ pl++g+ lGa+lG  l++  +p++ +k+ fg+l+++l+ + +
  MMETSP0890-20130614|32371_1   2 GGAIVVPALALaTeMDHKTMLGTSLLAMVPTAIAGLATHAKLGHLHTNVAFPLVIGTCLGAFLGGKLASdFIPEQPMKFGFGLLMIVLGGRTF 94 
                  677777777763355555577777777777777777777777777777777777777777777666666677777777777777777776665 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.5   2.1e-06    0.0071      48      90 ..      20      64 ..      10      88 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.1e-06
   PF02535.17 48 vllgtaflhLlpealealeesdcvee.feesh.plkgllvllGff 90
                 ++lgt++l ++p a+++l ++ ++++ +++ + pl+  ++l++f+
  MMETSP0890-20130614|32371_1 20 TMLGTSLLAMVPTAIAGLATHAKLGHlHTNVAfPLVIGTCLGAFL 64
                 8********************999997777667777777777665 PP

>> PF01169.14  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0   0.00026      0.88      31      78 .]      42      90 ..       5      90 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
   PF01169.14 31 kplaVflGatlAlllvtllavll.GkllakllperllklvaallFlafG 78
                 k     + ++  l++ t+l+++l Gkl + ++pe+ +k+  +ll++++G
  MMETSP0890-20130614|32371_1 42 KLGHLHTNVAFPLVIGTCLGAFLgGKLASDFIPEQPMKFGFGLLMIVLG 90
                 222333333444555566655552455599****************998 PP

>> PF13515.1  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2     2e-05      0.07      28      71 ..      43      90 ..       4      98 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
    PF13515.1 28 tigatatravqRllGTllGallallll..allpgn..lalillvflla 71
                      +++a+  ++GT+lGa+l+  l   ++ +++  +++ ll+++l+
  MMETSP0890-20130614|32371_1 43 LGHLHTNVAFPLVIGTCLGAFLGGKLAsdFIPEQPmkFGFGLLMIVLG 90
                 445567899999***********9999777778885666667776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 423.64
//
Query:       MMETSP0890-20130614|32379_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 269.59
//
Query:       MMETSP0890-20130614|32385_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-17   61.8   0.7      7e-17   61.0   0.2    1.7  2  PF14050.1  N-terminal conserved domain of Nudc.
    2.1e-10   40.8   0.0    3.7e-10   40.1   0.0    1.4  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF14050.1  N-terminal conserved domain of Nudc.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.2     1e-20     7e-17       1      61 [.       7      70 ..       7      71 .. 0.95
   2 ?   -2.9   0.0      0.89   6.1e+03      33      37 ..     109     120 ..     109     142 .. 0.57

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 1e-20
    PF14050.1  1 ekfdnmllaiaqqfggiedLLdtfFsFLerkTDFfh...kadlnndkmGfkpgeaeqlvmksfr 61
                 ++fd++++++a  +ggi+ LLd+fFsFL+r+TDF+    ++  ++   Gf  g+ae+++++sf+
  MMETSP0890-20130614|32385_1  7 DRFDELFMRAAGTAGGIQPLLDAFFSFLNRRTDFYVvhdGKVGESYAAGFAFGQAEKMLLDSFH 70
                 59**********************************988888899999**************96 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.89
    PF14050.1  33 DFfh.......k 37 
                  DFf        +
  MMETSP0890-20130614|32385_1 109 DFFAnvqynqdG 120
                  888844333331 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   5.5e-14   3.7e-10       2      78 .]     133     211 ..     132     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 5.5e-14
                  --EEEEETTEEEEEEE-------S-EEEEE----EEEEE---....EEE---BSS-EEEEEEEEEE---......EEEEEEEE CS
   PF04969.11   2 rydWyQtleeVtitipvkgvikkedvkveikkkslkvsikgpgekeyllegeLfgeIdpeesswkiedt......kieitLkK 78 
                  +++W+Qtl+e ti+++v+ +ik++d+ ++i++++l+++i +      +++ +++++I  + s+w++         +++++L+K
  MMETSP0890-20130614|32385_1 133 NHTWTQTLTETTIYFEVPSDIKARDITCKISSTRLELKIGN----GDHISDRFYAKIAEDGSMWTLDREeannraSLVLSLEK 211
                  79*************************************55....3478999*************987666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       399  (0.0291837); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 997.40
//
Query:       MMETSP0890-20130614|32415_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 352.41
//
Query:       MMETSP0890-20130614|32413_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-29  101.9   0.0      1e-28  100.0   0.0    1.9  1  PF01008.12 Initiation factor 2 subunit family
    0.00085   19.1   0.6     0.0017   18.1   0.1    1.8  2  PF13614.1  AAA domain
  ------ inclusion threshold ------
        0.1   12.4   0.3       0.39   10.5   0.0    2.0  2  PF01706.11 FliG C-terminal domain


Domain annotation for each model (and alignments):
>> PF01008.12  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0   2.3e-32     1e-28       4     281 .]      25     373 ..      22     373 .. 0.87

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 2.3e-32
                  --HHHHHTTTHHHCCHHTCCHTSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHH.HHCCTT-SSHHHHHHH..................................HHHHHHHHHHHHHHHHHH---TGGCCH-SB-EEEEES.----.TSHHHHHHHHC.CB--EEEEE--TT....TT--.-SHHHHHHHHT-EEEEE-GGGHHHHHHHTECEEEE---EEETTE-EEEE---HHHHHHHHHTT-EEEEB--GGGBETTS--GG.GS---B--THHHHBB---BCSST...............................T-EE--BSEEEEEGGG-SEEB-----B-S CS
   PF01008.12   4 GspaiaiaalevllevikdaktskvaeLkeklrkaidlLkkarPtavslgnairrllk.iselksssdvkeakks..................................liekikelikeieeadekigdiaaelikdgdtilTic.nskt.vlevlraaake.kkkfkVivvEsrP....rlqG.rltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqlde.difieerdpeellvvtgeriaee...............................elkvvnpafDvtPpelItliITevGvltp 281
                  +s + a++++ +l++v+   k++ + eL+ +l+  +++L +a P + ++gna+rr+l  i+e+  + +  +   +                                  ++e+i e+++eie+  e i+++   +i +++++lTi   +     +++ +a ++    + Vi+ + +      l+  + ++  L     +vtli+d+ + +vm + vd+vi+ A +++ +G++ +   +  +A++Ak+ n pvl++++++k++   q +  d      dp+ +l++++    ++                               +l+v np+fD +P++l++l+IT+ G+ +p
  MMETSP0890-20130614|32413_1  25 TSRTCALQTVALLRNVVGTCKWHSAGELIARLKWLGRRLSSAAPRQRTVGNAVRRILWmIREDAAELSARS---QgggrwqqrslqdvlaaqdhdtveleelpgelkqsVMEQILEFYDEIENVHEPIIEQLVRHIPSQQVVLTILdLTDDdHGQIVAKACQNcTEVLLVICQDAKSkdhdTLSSdNTIMSPLLTTLPNVTLIPDTNIVAVMPR-VDAVILPARSVAGDGSLLASPASFIVALAAKNYNRPVLAIVGLYKLCLGHQHNPfDAALHDSDPNSILPYADLPSDPSrdpdavfrrvstppspcapadniesssnnvtSLDVPNPLFDHVPANLLDLYITNTGAHQP 373
                  688899****************************************************5443333322222...24679999***************************************************************95455553344444444415567899988876323234455778888999999****************.**********************************************9887777624466899**********8888889*******************************************************9876 PP

>> PF13614.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   3.8e-07    0.0017      51     155 ..     101     199 ..      80     201 .. 0.86
   2 ?   -2.1   0.0      0.63   2.9e+03     131     149 ..     226     244 ..     222     246 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.8e-07
    PF13614.1  51 eekfglsdllynkkqgkenlatkrldellsqlalngldllapprspedlselspeeveqLlerlke.rYdvvilDlgslldedfallllklcdevllvvradvasl 155
                  +++++l+d+l+       ++ t+ l+el+ +l+ + +  +   +++++++++ +  +eqL +++ + +   +ilDl +   ++  +   ++c+evllv+ +d++s+
  MMETSP0890-20130614|32413_1 101 WQQRSLQDVLAAQ-----DHDTVELEELPGELKQSVMEQI--LEFYDEIENVHEPIIEQLVRHIPSqQVVLTILDLTDDDHGQIVAKACQNCTEVLLVICQDAKSK 199
                  45579********.....555589******6666555555..9999********************999********9999999999****************997 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.63
    PF13614.1 131 edfallllklcdevllvvr 149
                  ++   +++ ++d v+l++r
  MMETSP0890-20130614|32413_1 226 DTNIVAVMPRVDAVILPAR 244
                  5556679*********987 PP

>> PF01706.11  FliG C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.49   2.2e+03      83     102 ..      69      88 ..      63      96 .. 0.71
   2 ?   10.5   0.0   8.7e-05      0.39       3      54 ..     119     172 ..     117     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.49
   PF01706.11  83 klsdveaaqkeivatvrela 102
                  +++ v +a ++i+ ++re a
  MMETSP0890-20130614|32413_1  69 RQRTVGNAVRRILWMIREDA 88 
                  66777777777777777654 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8.7e-05
   PF01706.11   3 aLeeedpelaeeirkkmFtFed.lvrlddraiqrllrevdkevLal.ALkgase 54 
                  +Lee   el + +++++++F d ++++ +  i++l+r++++++++l  L  +++
  MMETSP0890-20130614|32413_1 119 ELEELPGELKQSVMEQILEFYDeIENVHEPIIEQLVRHIPSQQVVLtILDLTDD 172
                  6899999************96538****************77765505554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.39s 00:00:01.16 Elapsed: 00:00:00.73
# Mc/sec: 1283.53
//
Query:       MMETSP0890-20130614|32422_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.46s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 193.99
//
Query:       MMETSP0890-20130614|32424_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-39  135.5   0.0    1.8e-39  135.0   0.0    1.2  1  PF01513.16 ATP-NAD kinase


Domain annotation for each model (and alignments):
>> PF01513.16  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   1.3e-43   1.8e-39     135     276 ..      39     214 ..      29     215 .] 0.95

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 1.3e-43
                  EEEEEEEEEECCCCCEE.................................EEE---ESSEEEEEESSTT--EEEEEEE---EEEEEEE---EEEE-----SHCCC----EE-TTS-EEEEE-SS-SS-----EEEETTSEEEEE--...ESSEEEEE---EEEEE----EEEEEEE CS
   PF01513.16 135 kvekrelldvsvrrskr...............................aeivledlalnevviiggpastmielelyvdgelletirldglivstptGstayslsaggpiispgvlailispicphslserpiVvpsssklrirvk...keeallaldGeeelelkkgdeirvrvs 276
                  +v+ r++l +++r++++                               + +v+++ +lnevvi++g+  +++ ++ + +g+ l+ti++dg ivstptGstays+saggp ++p+ +++l++picphsls+rpiV+p+s +l +rv+   + +a++ ldG+++l  k g +++v +s
  MMETSP0890-20130614|32424_1  39 PVSLRMRLRCILREEEEgisqdytrdsnftqfslddqerqsgiidttnQLVVAVHECLNEVVIDRGTSRFLSAVQCCCNGQVLTTIQADGCIVSTPTGSTAYSMSAGGPMLHPSSPCMLLTPICPHSLSFRPIVFPDSAQLIFRVDpraRGDAWITLDGRTKLRMKRGSTLEVIAS 214
                  678899999999999999999999999999999999999999999998899*************************************************************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.44s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 696.24
//
Query:       MMETSP0890-20130614|32429_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-11   42.4  21.6    8.4e-10   37.8   8.5    2.0  2  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.4    7.1   9.9      0.058   11.6   2.4    1.9  3  PF13347.1  MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   8.5   1.2e-13   8.4e-10     137     327 ..       3     170 ..       1     182 [. 0.67
   2 !   10.2   1.2   2.9e-05       0.2     121     167 ..     197     244 ..     193     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.2e-13
   PF07690.11 137 lgpllggllasslgWravFlilailsllaav.lvllllprepperkrkspaeelrkepaplvpawklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGfglglvfptllalas 327
                  + +l+  +++s+ gWr++Fl+l++++++++    +++   +p+ ++++++ +                + pp l  l +++ l +f++ + +++  +y   + g s  ++ a++l+ +++++g++g++++ +l+d++g+ + ll++++++ la ++l +l  +      l++l+++Gf +g++ +++  l++
  MMETSP0890-20130614|32429_1   3 FLALVLHFVISYQGWRLAFLVLCLATIVSLPpASYAVGGKDPKIKQNQRDSTS---------------KCPPLLIRLALTSGLYGFGWELPFIHGVSY-ALDKGHS--HVAASALVLMIGIGGLVGRVACLALADKIGPGPVLLAVCAATCLAHAILPFLIQF------LVFLYFYGFIVGTTAGACIGLTT 170
                  5666777888999***************9554433333444444444443333...............344422234444444455777788888888.8888888..677777788888888888************9888888888888888888888888......55666666666666555544443 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 2.9e-05
   PF07690.11 121 gralgllsagfslGailgpllggllasslg.WravFlilailsllaav 167
                  + a gl+++++s G + gp+l+g++ +  g + ++F  +a+  lla+ 
  MMETSP0890-20130614|32429_1 197 SYASGLVYSAMSPGLVAGPILAGYIRDRTGsFDLAFAYAALCWLLALA 244
                  6799**********************6666699999988887777744 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.13   8.6e+02     167     189 ..      10      31 ..       2      55 .. 0.55
   2 ?   11.6   2.4   8.5e-06     0.058     260     339 ..      95     173 ..      61     183 .. 0.88
   3 ?   -2.4   0.1      0.15     1e+03     272     302 ..     210     241 ..     196     250 .. 0.44

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.13
    PF13347.1 167 lgggetsgyrlaavvigilalls 189
                  +   ++ g+rla++v+++  ++s
  MMETSP0890-20130614|32429_1  10 FVISYQ-GWRLAFLVLCLATIVS 31 
                  333332.5555555555444443 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 8.5e-06
    PF13347.1 260 lvkllaligtiaallalplipflakklgkkkifflglaiaiigylllfflsteniwlllivvvvaglglgataalvwsml 339
                  ++++l+l++ i++l++ ++   la k+g   ++++ +a+++++ ++l fl  + +++l++  +++g++ ga++ l++ ++
  MMETSP0890-20130614|32429_1  95 AASALVLMIGIGGLVGRVACLALADKIGPGPVLLAVCAATCLAHAILPFLI-QFLVFLYFYGFIVGTTAGACIGLTTPLA 173
                  567889999**********************99999999999999999997.9********************9987665 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.15
    PF13347.1 272 allalpli.pflakklgkkkifflglaiaiig 302
                  +l+a p+  +++  + g   ++f+ +a++ ++
  MMETSP0890-20130614|32429_1 210 GLVAGPILaGYIRDRTGSFDLAFAYAALCWLL 241
                  44443333344444444444333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.65
# Mc/sec: 1013.84
//
Query:       MMETSP0890-20130614|32432_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-16   58.3   0.0    1.1e-15   57.7   0.0    1.3  1  PF11969.3 Scavenger mRNA decapping enzyme C-term binding
    0.00018   21.6   0.0    0.00041   20.5   0.0    1.6  1  PF05652.7 Scavenger mRNA decapping enzyme (DcpS) N-terminal


Domain annotation for each model (and alignments):
>> PF11969.3  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.6e-19   1.1e-15      10     113 ..     158     280 ..     149     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 1.6e-19
                  TSS-B-EEEE-SSEEEEE-SS.-S....................SSS-EEEEESS.--SSGGG--TTCCCHHHHHHHHHHHHHHH-------EEE----------S-S--EEEE-........-- CS
    PF11969.3  10 ekepenvvyedekavvfkDik.pk....................aslHllvipkrkdikslrdltkehlplLkemrekakkvieekynedlnkdelrlgfhyppsvyhLHlHvisldfespglkr 113
                  + e+e+ ++ ++++++  D k +                     ++l+ll+i ++ +++s+rdl+ + + lL+em+ +  + + + y + + k ++r++fhy+p++y+LH H++ +++++pg+++
  MMETSP0890-20130614|32432_1 158 RTEKERNLFVSDQFIINVDTKwNThgelttneiarkawhgaswtTDLYLLAISRDLSLRSIRDLDGNAIGLLREMKAALIQCALNIY-G-VPKHKIRIFFHYHPQFYRLHAHCTRIEYNNPGCES 280
                  566777777778888888888644566777778888888888889******************************************.4.7*****************************99875 PP

>> PF05652.7  Scavenger mRNA decapping enzyme (DcpS) N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     6e-08   0.00041       3     101 ..      25     117 ..      23     119 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6e-08
    PF05652.7   3 lleeFkleriLdsdsktksisllgkiddedaililekthFseeeleseasllskieelkelakNDiYtwylavlkqdlekqpdvkitliyPatekhikk 101
                  +l+e k+er+L+ d+  + + +lg+++++  +l l++++  ++e     ++   i elk  +kN  ++ +       ++   +  i++i+Pa e+ i++
  MMETSP0890-20130614|32432_1  25 DLREIKIERVLRFDQGGRAAVILGSFEEKAILLSLDQKAACSNEE----AMCALIPELKLSMKN--FSGGEYSYYDGMSPFANYNIEVIWPAQERQIQR 117
                  78999*********************9887777777655444333....5889999********..777777777878866799***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.66
# Mc/sec: 1212.70
//
Query:       MMETSP0890-20130614|32444_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.51
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|32445_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-26   91.4   0.0      5e-26   91.3   0.0    1.0  1  PF01026.16 TatD related DNase


Domain annotation for each model (and alignments):
>> PF01026.16  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   3.7e-30     5e-26      62     254 ..       2     188 ..       1     190 [. 0.92

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 3.7e-30
                  ----GGG--HHHHHHHHHHHHH--SSEEEE-EE-EE-.------HHHHHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHH-.-TT.---B------HHHHHHHHH-......---B-----TT-TTT-SHHHHHHHS-GGGB-----TTSS-----------GGGHHHHHHHHHHH-SS-HHHHHHHHHHHHHHHH CS
   PF01026.16  62 HPnevdeaneelleeleelanvkhskvvaiGEiGLDyysreestkeaqeevFeeqlelAkelklplviHtreaeedlleilkeaa.eakakvvlHcfsgseeeakelldl......gyyislsglltfknakklrelvkavpldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkgltleevaaitaeNakrlf 254
                  HP+ v+ + +el+  l+    ++++  + +GEiGLD   r  +t   qe++F++q+ lA+el++p+ +H+++a+ ++  +++ea+  +  ++ +H++ gs++  + l++        +++++s +++ +++k   +l++a+p++ +L+E+D   l++      +  + ++ + ++ +a+ k+++ e ++ ++ +Na++++
  MMETSP0890-20130614|32445_1   2 HPWWVATEYDELISLLRTR--LETDSQAFVGEIGLDGL-R-RETLNTQETLFRQQFALAAELQRPVTLHCVRAYGRMRTAIEEAEcLPP-AISMHSYGGSYDFGRDLISItakkncHLFFGFSWTINGQRSKPQYDLIRALPDNSILLESD---LED-----SQHIDSHLEQACQLIAKSKQWSQEFTYLTCHQNALAFL 188
                  9999999888888666555..89999999********4.4.4899***************************************95555.9***********99999988899999***********************************...455.....899*******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       415  (0.030354); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.80
# Mc/sec: 608.08
//
Query:       MMETSP0890-20130614|32450_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.77
# Mc/sec: 815.38
//
Query:       MMETSP0890-20130614|32454_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   16.1   0.4      0.015   14.8   0.3    1.6  1  PF10335.4 Putative nucleotidyltransferase substrate binding domain
  ------ inclusion threshold ------
       0.15   11.4   3.4        1.4    8.2   0.1    2.8  2  PF11819.3 Domain of unknown function (DUF3338)
        1.1    8.9   6.9       0.63    9.7   1.2    2.2  2  PF04513.7 Baculovirus polyhedron envelope protein, PEP, C terminus


Domain annotation for each model (and alignments):
>> PF10335.4  Putative nucleotidyltransferase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   3.2e-06     0.015      47     100 ..      89     143 ..      87     153 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.2e-06
    PF10335.4  47 vdgaRllALeagisat.nTle.RlealaeagvlsaelaedlaeayefllglRlrhq 100
                  +dgaRllALe  ++   +T + Rl+ l+++ +lsa++++dl+e+ ++l + R   q
  MMETSP0890-20130614|32454_1  89 IDGARLLALEDAVQDLgDTRDlRLQSLEQQIKLSAKMHNDLVESVQLL-RRRVDAQ 143
                  58**********8776268878**********************9876.4455555 PP

>> PF11819.3  Domain of unknown function (DUF3338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0003       1.4      23      57 ..       5      39 ..       2      59 .. 0.86
   2 ?    2.2   0.1     0.022     1e+02      97     121 ..     101     125 ..      87     133 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0003
    PF11819.3 23 sessekdkkeklralkkkqksleerLelkleELkk 57
                  es  ++ k++l al ++ +sl+++Le+ l+E+++
  MMETSP0890-20130614|32454_1  5 KESLDDTIKNQLIALSQRYESLKDELENNLTEIRH 39
                 466678899***********************996 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.022
    PF11819.3  97 rkilqkkedsaLeslErelavqqqi 121
                   + l +++d  L+slE+++ +  ++
  MMETSP0890-20130614|32454_1 101 VQDLGDTRDLRLQSLEQQIKLSAKM 125
                  45688999**********9998876 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.2   0.00014      0.63      41      80 ..      10      49 ..       3      65 .. 0.50
   2 ?    1.6   0.2     0.044     2e+02      35      74 ..     100     138 ..      88     155 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00014
    PF04513.7 41 daietqLnalsedlksllaeldtrldtlltnLtdalnalq 80
                 d+i++qL als++ +sl  el+++l++  + +t++l  l+
  MMETSP0890-20130614|32454_1 10 DTIKNQLIALSQRYESLKDELENNLTEIRHSVTAQLEPLT 49
                 4444444444444444444444444444444444444443 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.044
    PF04513.7  35 qlatlldaietqLnalsedlksllaeldtrldtlltnLtd 74 
                  +++ l d+ + +L++l++++k  +a+++++l ++++ L +
  MMETSP0890-20130614|32454_1 100 AVQDLGDTRDLRLQSLEQQIKL-SAKMHNDLVESVQLLRR 138
                  4444445555556666666654.55566666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1072  (0.0784084); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.45s 00:00:01.22 Elapsed: 00:00:00.67
# Mc/sec: 1155.26
//
Query:       MMETSP0890-20130614|32474_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-05   23.2   0.0    3.7e-05   23.1   0.0    1.0  1  PF10294.4 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.7e-09   3.7e-05      58     128 ..       1      63 []       1      63 [] 0.91

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.7e-09
    PF10294.4  58 GlvGiavalllpeakviltDleellellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaD 128
                  Gl G+++a+l  +a+v+l Dl+e l  l+ n ++n      ++++++L W+ ++  dv   e+ D++l  D
  MMETSP0890-20130614|32474_1   1 GLPGLTAAAL--GARVTLCDLNENLASLHFNAKVNP----GSARVQALRWAADI--DVQGLENADFVLGTD 63 
                  889*****99..9*********************76....99999*********..66667778****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 218.80
//
Query:       MMETSP0890-20130614|32481_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 292.44
//
Query:       MMETSP0890-20130614|32480_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-91  303.9   1.7    1.5e-90  303.1   1.2    1.3  1  PF00224.16 Pyruvate kinase, barrel domain
    3.5e-22   78.0   0.7    8.8e-22   76.7   0.5    1.7  1  PF02887.11 Pyruvate kinase, alpha/beta domain
    0.00014   20.6   0.4    0.00029   19.6   0.3    1.6  1  PF03328.9  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PF00224.16  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   1.2   3.4e-94   1.5e-90     133     343 ..       2     218 ..       1     221 [. 0.95

  Alignments for each domain:
  == domain 1    score: 303.1 bits;  conditional E-value: 3.4e-94
                  EEEEEEE----E.EEEEEEE---B------B---------SS-HHHHHHHH---TT--SEEEETTE-SHHHHHHH....HHH-------SE..EEEEE-S----TTHHHHHHH----EEE-------S-CCCHHHHHHHH---TTT-----EEESSTTGGGGTSSS--CHHHHHHHHHHH----EEEE---------HHHHHHHHHHHHHHHHHCS- CS
   PF00224.16 133 lslkvlevddekelkvevenegvlssrkgvnlpgtkvdlpalsekDkadlkfgvkqgvdliaasfvRkaedvkev....Revleekgkeik..iiakienqegvenldeileasdgimvaRGDlGieipaekvvlaqkllikkcnlagkpvitatqmlesmiknPrptRaevsDvanavldGaDavmLsgetakGkyPveavkamaevaleaekalk 343
                  ++l+v++++ + ++++++ n+g++++rkgvnlpg+++ lpal+ekD++dlk+gv +++d +aasf+R+a++v++v     + + e++++i+  +i+kie+qegv+n+ eileasdgimvaRGDlG+eip+e+v+l qk+++++cn+agkpvi+atqml+sm+++PrptRaevsDvanavldG+D++mLsgeta+G+yP+++++am ++a +a++ l+
  MMETSP0890-20130614|32480_1   2 IALRVEAIETNGKIRTKALNTGNIKKRKGVNLPGCNLLLPALTEKDRSDLKWGVDNNIDAVAASFIRNAANVRAViahlDRCCAEANRKIRpmVISKIESQEGVQNFSEILEASDGIMVARGDLGVEIPFEDVFLHQKKMVRMCNQAGKPVIVATQMLDSMQTRPRPTRAEVSDVANAVLDGSDTLMLSGETAAGEYPIQSIQAMRAIANKADNLLD 218
                  7899*******************************************************************99873222467889999996669**********************************************************************************************************************99776 PP

>> PF02887.11  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.5   1.9e-25   8.8e-22       2     103 ..     239     349 ..     238     358 .. 0.90

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 1.9e-25
                  HHHHHHHHHHHHHHT-SEEEEE-----HHHHHHHT--SSEEEEEES-HHHHH--TEEE--ETTE-SHHCHC...........HHHHHHHHHHHHHHTTS--SSSEEEEEE--- CS
   PF02887.11   2 eaiaeaaveaAkelgakaIvvltesGstarlvskyrpgvpIlavtpseetarqlalvwGvhplvgkerais...........tdeviaealraalkkglikkgdevvvtaglp 103
                  +a+a++av++A el+ak I++++++G+  r ++k+rp+vp++a+ ++e +arql++++ v+p++++ +  +           ++e+  ealr++ + g+ik++d+vvv+   +
  MMETSP0890-20130614|32480_1 239 DAVASSAVSVADELKAKIIIAISSTGKVPRALAKMRPSVPVIAFVTDEAVARQLNFHRAVQPILLPIKG-DtttldaydskqMTELRTEALRTCSELGWIKSSDRVVVVDR-K 349
                  89************************************************************7665555.336777888888***************************98.3 PP

>> PF03328.9  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   6.4e-08   0.00029      78     158 ..      51     129 ..      42     190 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.4e-08
                  GG.HHHTT--EEEESS--SHHHHHHHHHHTSHTT-----CHHH-EEEEB--SHHHHHTHHHHH.TSTTEEEEB---HHHHHH- CS
    PF03328.9  78 le.vldagaqgvlvPkvetaeevrevvkilrypekgirganketcllaqiESaegvknadeIa.avegldgvalGaeDlsadl 158
                  l+  +d  +++v   ++ +a++vr+v + l +  ++  ++  + +++  iES+egv+n  eI+ a++   g++++  Dl +++
  MMETSP0890-20130614|32480_1  51 LKwGVDNNIDAVAASFIRNAANVRAVIAHLDRCCAEANRKI-RPMVISKIESQEGVQNFSEILeASD---GIMVARGDLGVEI 129
                  55556666666777777777777766655555544433322.2357889*************96665...5566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:01.04
# Mc/sec: 852.55
//
Query:       MMETSP0890-20130614|32489_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   18.4   0.0     0.0032   17.0   0.0    1.7  1  PF07717.11 Oligonucleotide/oligosaccharide-binding (OB)-fold


Domain annotation for each model (and alignments):
>> PF07717.11  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-07    0.0032       9     106 ..      40     169 ..      22     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.3e-07
                  HTT----......---TTSTTHHHHHHHHHH---TTSEEE.--.----EETTG-...................................B-EE-TTS---.---.SEEEEEEE.EESSS..EEEEEEEE--HHHHHH CS
   PF07717.11   9 dlglkeeaakasrssenesakdaellrkallaGlypniarlde.kgdYktvrkq...................................rvfiHpsSvlaekkppewvvyael.vetsk..lymrnvtaiepewlll 106
                  d+   +++++++++++ ++++d +l+ ++ + Gl  n+a +    +       +                                    v i    + a++++p+ +v++el v +s    ++rn++ ++p+ l+l
  MMETSP0890-20130614|32489_1  40 DVPALQNSSSSQKQQQVQQENDDDLVTRSFCFGLCLNAAERGFhPE-------AfvllqgpglkldaqlqadqsllgdtayqhdppnvsLVRIADDTAAAFRRTPDAIVFHELkVGSSSrgAFARNLVVVSPSLLAL 169
                  45556667778999999************************43423.......1333444466777677777777777444444444445555555555599999********66555469***********87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 811.07
//
Query:       MMETSP0890-20130614|32506_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.2    7.6  12.5        2.5    7.4   8.7    1.1  1  PF03064.11 HSV U79 / HCMV P34
        2.5    7.0  11.8        2.9    6.8   8.2    1.1  1  PF05477.6  Surfeit locus protein 2 (SURF2)


Domain annotation for each model (and alignments):
>> PF03064.11  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.7   0.00037       2.5     152     207 ..      32      93 ..       7      98 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00037
   PF03064.11 152 kvcralsrkks.dderkk..ksakqkekRrdeds...kkkkedrkkkqeekrtsdedkrsgk 207
                  k+    ++k+s dd++ +  +++++k++Rr+e+    kkk  +  kk+e+  +s  + + +k
  MMETSP0890-20130614|32506_1  32 KEEVGFKKKSSaDDDHYGgsRMNEKKKRRRQEENigrKKKSTRASKKSESDDESLAESSYDK 93 
                  33323334444766655412557777888887654544445555566665555544444444 PP

>> PF05477.6  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.2   0.00042       2.9     163     232 ..      12      83 ..       3      94 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00042
    PF05477.6 163 ddadseDsmsDlyPpelftkkelekeqdtd..eeddFetddedemeveseekeqkrskkqseslkkkfkkah 232
                  d+ads+  m D y + + + ke    +++   ++d + ++  +e++++ +++e+ ++kk+s+ ++kk  + +
  MMETSP0890-20130614|32506_1  12 DNADSDSDMNDDYISPVEESKEEVGFKKKSsaDDDHYGGSRMNEKKKRRRQEENIGRKKKSTRASKKSESDD 83 
                  78899999****999888877765433333224555566666777777777777777888888877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       978  (0.0715331); expected 273.4 (0.02)
Passed bias filter:                      499  (0.036498); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.34s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 362.69
//
Query:       MMETSP0890-20130614|32496_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-62  211.4   0.0    1.4e-38  132.3   0.0    3.2  3  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.2    0.0015        20     153     225 ..     177     248 ..     173     258 .. 0.80
   2 !  132.3   0.0   9.9e-43   1.4e-38       3     193 ..     268     461 ..     266     515 .. 0.91
   3 !   71.8   0.0   2.2e-24     3e-20     265     374 ..     538     641 .]     525     641 .] 0.94

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0015
   PF00022.14 153 vtsvvpvleGlvLkkairrldlgGkalteqlkellsskkvevtprylikkkkavetesfktleeeevleeiKe 225
                   +++  v+    +k++  r++ gG  l+   k+  ++   +v+p+   kkkk++ +++ + +  ++++ e Ke
  MMETSP0890-20130614|32496_1 177 AAHINEVMSPENIKQSRGRSPQGGSMLDMLAKQSSEKLMNQVSPTKKSKKKKMN-KQESNDSVASSIVPEDKE 248
                  56777888888899999**********999999999977788998888888887.666677777777777776 PP

  == domain 2    score: 132.3 bits;  conditional E-value: 9.9e-43
   PF00022.14   3 evsavVlDnGssttkaGfagedaPkavipsvvgkprgekvea...klyvgdealekrpelevrnpvedGvvedwdameelwehvlkeelkvdpeehpllltepplnppanrekateivfEkfkvpalylaksavlsayasgkatglvvDsGasvtsvvpvleGlvLkkairrld.lgGkalteqlkellsskkve 193
                  ++ ++V+D G   t++Gfage++P+  + ++vg+ + +   +   ++  g++a +  + + ++ p+++G+v+ wd++e+lw  ++ +    d++ +  l++  +l+p+a ++k++e++++ +++ a+ ++ s+vl+++ +g +tglv+D+G++ + +vpv++G++L++ai   + lgG+al+   +++l++k++ 
  MMETSP0890-20130614|32496_1 268 KEGVFVIDAGGWKTRVGFAGEEIPRLELETIVGRRKSTMGGDsmpEYAYGNSARRASTVYDLNIPISRGFVTHWDEAEKLWTAAFMQVC-QDSKPKACLIASGVLQPKATKQKLAELCLDRLGFDAFHIGVSPVLALFGAGYTTGLVLDCGKDASRAVPVYDGFALPHAIIIDPcLGGDALDAATARILETKSLG 461
                  56799****************************988876555677*******9999***************************999855.5777788899*********************************************************************9876659*************997654 PP

  == domain 3    score: 71.8 bits;  conditional E-value: 2.2e-24
   PF00022.14 265 frvpEilFdpsligsesaleekkllgiaelivaainacdvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysaWiGGSiLAslgtfqqlw 374
                   ++ E+lF+p++ +s  +       g+a +i++ai+a+d+dlrk++++ ++++G+ sllp++ eRl++el++lap++  v i+a   +r  +a+ G+++ +sl++f++ w
  MMETSP0890-20130614|32496_1 538 ATIGETLFKPQINNSAVE-----SPGLAGIIFKAISATDIDLRKSFYEGVLLVGAGSLLPNTPERLDHELQHLAPQNAPVAITAYD-QRDLAAFHGAAMVSSLDDFSNNW 641
                  5799******88777655.....78************************************************************9.*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1049  (0.0767262); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.96
# Mc/sec: 1600.07
//
Query:       MMETSP0890-20130614|32510_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   15.5   0.3      0.021   14.4   0.3    1.6  1  PF05163.7 DinB family
  ------ inclusion threshold ------
       0.12   11.5   0.0       0.23   10.5   0.0    1.4  1  PF06319.7 Protein of unknown function (DUF1052)


Domain annotation for each model (and alignments):
>> PF05163.7  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   3.1e-06     0.021       9     104 ..      75     173 ..      61     200 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.1e-06
    PF05163.7   9 ellqynqwardrtldaiaa...LpdeelkaengegfqsvkqtlnHvldveelwlsrlegeegapavddqterkeleeldalrealderliafldqltd..l 104
                  el++y ++ ++r+++   +   +   +++   +e  qs++  l +v  ++e  ++++     ++ ++d+++++e e++  +++a  +rl+++l++  d   
  MMETSP0890-20130614|32510_1  75 ELVSYSREMNERLDKYMDDmglIRSSAFDLTAKEEEQSIENFLDGVCLARERIIEFFLD--LKEPKKDKKNEEEEEDIFNAQAAIGKRLYHLLENADDntA 173
                  666666666666666665533367788999999************************99..8888889999999********************9999331 PP

>> PF06319.7  Protein of unknown function (DUF1052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.4e-05      0.23      99     148 ..     294     344 ..     289     351 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.4e-05
    PF06319.7  99 PaeifPeecGlllsdg.yGaellreapehrlaaatrkaltlrfaraaaarl 148
                  P+++ P+ cG++l+d+ +G +  r  +    + +  k +tl+far   +r 
  MMETSP0890-20130614|32510_1 294 PSHVPPKLCGFILADAtFGPDSTRGLTASTNSNSNAKPVTLTFARQVDHRS 344
                  778889*********669***************************987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 1126.00
//
Query:       MMETSP0890-20130614|32521_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-06   26.1   1.0    6.8e-06   25.6   0.7    1.2  1  PF13639.1  Ring finger domain
     0.0013   18.5   0.5     0.0024   17.6   0.4    1.5  1  PF11793.3  FANCL C-terminal domain
     0.0036   16.8   1.0     0.0089   15.5   0.7    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0071   16.0   1.8      0.023   14.4   1.2    1.8  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0097   15.9   3.4       0.02   14.9   2.1    1.8  2  PF12678.2  RING-H2 zinc finger
  ------ inclusion threshold ------
      0.017   14.8   1.0      0.023   14.3   0.7    1.2  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      0.069   13.0   1.3       0.13   12.2   0.9    1.4  1  PF12906.2  RING-variant domain
       0.14   12.2   0.0       0.45   10.6   0.0    1.7  2  PF11786.3  Aft1 HRA domain


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.7     4e-09   6.8e-06      21      45 ..       2      39 ..       1      40 [. 0.76

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4e-09
    PF13639.1 21 CgHvfHeeCldewlrssn.............sCPlCrk 45
                 C H fH+eCl +w+ +                CP+C +
  MMETSP0890-20130614|32521_1  2 CIHQFHKECLVAWIATAIseetpnnenlralACPTCAQ 39
                 99***********955322334456778999*****86 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   1.4e-06    0.0024      28      64 ..       2      40 ..       1      46 [. 0.79

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-06
                 ----B-SGGGHHHHHHHH----..TTT------TTT-S- CS
    PF11793.3 28 CnkkfHaaCLkeWlrslkesrq..sfdvlfGeCPyCkkk 64
                 C ++fH++CL+ W+++  + ++    ++    CP C + 
  MMETSP0890-20130614|32521_1  2 CIHQFHKECLVAWIATAISEETpnNENLRALACPTCAQS 40
                 99*************987766611456777789999875 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   5.2e-06    0.0089      17      41 .]       2      37 ..       1      37 [. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.2e-06
                 TS-EE-CHHHHHHHCS...........T-----TTT CS
   PF00097.20 17 CkHsfCskCirkilks...........rkkvkCPlC 41
                 C H+f+++C++ ++ +            ++  CP+C
  MMETSP0890-20130614|32521_1  2 CIHQFHKECLVAWIATaiseetpnnenLRALACPTC 37
                 ***************999999987544344449999 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.2   1.3e-05     0.023      52      72 ..       2      22 ..       1      44 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-05
    PF12861.2 52 ckhnfhlhcilkwletetskg 72
                 c h+fh+ c++ w++t  s++
  MMETSP0890-20130614|32521_1  2 CIHQFHKECLVAWIATAISEE 22
                 9*************9987764 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.1   1.1e-05      0.02      52      74 ..       2      37 ..       1      38 [. 0.81
   2 ?    1.6   0.0      0.16   2.8e+02      22      26 ..      34      38 ..      16      91 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
    PF12678.2 52 CgHaFHlhCiskWlktrk.............tCPlc 74
                 C H+FH++C+  W+ t+               CP+c
  MMETSP0890-20130614|32521_1  2 CIHQFHKECLVAWIATAIseetpnnenlralACPTC 37
                 99************8765555677888888888888 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.16
    PF12678.2 22 CaiCr 26
                 C  C 
  MMETSP0890-20130614|32521_1 34 CPTCA 38
                 33443 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.7   1.3e-05     0.023      21      45 ..       2      38 ..       1      39 [. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
    PF13923.1 21 CgHlyCkkCieqwleks.....kkk........CPiCr 45
                 C H ++k+C+  w+ ++       +        CP+C 
  MMETSP0890-20130614|32521_1  2 CIHQFHKECLVAWIATAiseetP-NnenlralaCPTCA 38
                 99**************8775540.155677777****6 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   7.5e-05      0.13      25      47 .]       4      37 ..       2      37 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.5e-05
                 TS--HHHHHHHHHH.......HT-SB.......-S-- CS
    PF12906.2 25 klvHesCleeWlke.......saktk.......CelC 47
                 + +H++Cl  W+ +       +   +       C  C
  MMETSP0890-20130614|32521_1  4 HQFHKECLVAWIATaiseetpN---NenlralaCPTC 37
                 679**********988654431...134456667777 PP

>> PF11786.3  Aft1 HRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00026      0.45      46      68 ..      22      44 ..      15      47 .. 0.93
   2 ?   -1.2   0.0       1.3   2.2e+03      31      44 ..      80      93 ..      64      95 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00026
    PF11786.3 46 etpnesslRtgltPgGsGsmfPa 68
                 etpn++ lR++  P+ + sm+P 
  MMETSP0890-20130614|32521_1 22 ETPNNENLRALACPTCAQSMLPT 44
                 79*******************95 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.3
    PF11786.3 31 sndylsnesdaegG 44
                 +ndy  +++ ++ G
  MMETSP0890-20130614|32521_1 80 QNDYTGDTTTVQEG 93
                 68999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       609  (0.0445436); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.94
# Mc/sec: 247.28
//
Query:       MMETSP0890-20130614|32551_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.75
# Mc/sec: 178.93
//
Query:       MMETSP0890-20130614|32540_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-37  128.3   0.0    6.5e-36  123.2   0.0    2.3  2  PF00270.24 DEAD/DEAH box helicase
      2e-26   91.5   0.0    1.1e-25   89.1   0.0    2.3  2  PF00271.26 Helicase conserved C-terminal domain
    0.00077   19.2   0.0     0.0021   17.7   0.0    1.8  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.014   15.2   0.0       0.16   11.8   0.0    2.7  4  PF13307.1  Helicase C-terminal domain
       0.12   11.9   1.2        0.3   10.6   0.8    1.7  1  PF14392.1  Zinc knuckle
       0.61   10.0   7.0      0.043   13.6   1.0    2.0  2  PF00098.18 Zinc knuckle


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   2.8e-39   6.5e-36       1     171 [.     216     396 ..     216     398 .. 0.93
   2 ?    2.6   0.0     0.031        71      68     106 ..     458     502 ..     415     509 .. 0.74

  Alignments for each domain:
  == domain 1    score: 123.2 bits;  conditional E-value: 2.8e-39
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H.....TTSTSEEEEEESSHHHHHHHHHHHHHHTTT.........SS.EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk.....kttikkalivaPtreLaeqtlnnlkkfkky.........pklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 171
                  tpiQ + +p++l+g+d++++a TGsGKTl f++p++ + +e  k     + +    ++++P+reLa+qt + ++kf +           +lr+ l +gg + +r ql+ + ++g++ +v+Tpgrl d +++++ln++++++l lDE dr+l+ gf ++++qi++  +++  +q++++SAT+p++++
  MMETSP0890-20130614|32540_1 216 TPIQIQGLPIALSGRDMIGVAFTGSGKTLTFCLPLIVRAIE--KgfcigPGQGPIGFVLCPSRELARQTRDVIQKFSEClrfeseqniNSLRIGLAVGGED-KRSQLEIIrRQGIHCLVATPGRLGDFLRRRHLNFEHCEYLCLDEGDRMLDLGFDQEVQQIINFFQHQ--RQTLLFSATMPQKIR 396
                  89**********************************99988..44689877888**********************99999999999988999*******9.559999999889******************99*******************************9777..9**********8876 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.031
                  HHHHTTT...SS.EEEEETTSSBHHHHHHHHH....T..-SEEEEE CS
                  xxxxxxx...xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
   PF00270.24  68 lkkfkky...pklrvlliiggvalardqlsvl....dngvdivvgT 106
                  + ++ +y   +++ +++i+g++ ++ +++  l    +n+ d++v+T
  MMETSP0890-20130614|32540_1 458 VDDIYEYlllKEIDAVAIHGDKHQQ-ERNDALsafrNNQKDVLVAT 502
                  4444455666789999999999855.5555556789999*****99 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5   3.5e+03       5      40 ..     298     333 ..     294     334 .. 0.74
   2 !   89.1   0.0   4.9e-29   1.1e-25       2      78 .]     464     540 ..     463     540 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.5
                  H----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEES CS
   PF00271.26   5 kkgikvailhgelpqnereeileqfnagkskvlvat 40 
                  +++i+++++      ++++  le  +++  ++lvat
  MMETSP0890-20130614|32540_1 298 EQNINSLRIGLAVGGEDKRSQLEIIRRQGIHCLVAT 333
                  566666666666667788888888889999999998 PP

  == domain 2    score: 89.1 bits;  conditional E-value: 4.9e-29
                  HHHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  +l  k+i ++++hg+  q+er++ l+ f++++++vlvat+va+ G+d+pd+++Vinfdlp   + y++riGRtgR g
  MMETSP0890-20130614|32540_1 464 YLLLKEIDAVAIHGDKHQQERNDALSAFRNNQKDVLVATDVAAKGLDFPDIKHVINFDLPAEIEHYVHRIGRTGRCG 540
                  566789*********************************************************************76 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.4e-07    0.0021      32     182 ..     236     391 ..     204     393 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.4e-07
   PF04851.10  32 maTGtGKTlvaas.liarlar...........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk...yreile..fkkafllglTATp 182
                  + TG+GKTl+ +  li r ++             ++l+p++el  q+++ ++kf++ +  fe++++++     l    ++k ++ e +  + +  +++t  +l   l++           ++ + ++ +++  DE  r+ +       ++i++   ++   l ++AT 
  MMETSP0890-20130614|32540_1 236 AFTGSGKTLTFCLpLIVRAIEkgfcigpgqgpIGFVLCPSRELARQTRDVIQKFSE-CLRFESEQNINSLRIGLAVGGEDKRSQLEIIRRQGIHCLVATPGRLGDFLRR-----------RHLNFEHCEYLCLDEGDRMLDLGFdqeVQQIINffQHQRQTLLFSATM 391
                  67********995578888888999******988999**************66655.4555444444444444444444444444566666777777777777777665...........333445666888888888655544111555555655555668888886 PP

>> PF13307.1  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.75   1.7e+03      44      67 ..     118     141 ..      97     151 .. 0.79
   2 ?   -2.9   0.0       2.2   4.9e+03      14      32 ..     271     294 ..     269     335 .. 0.58
   3 ?   -2.4   0.0       1.5   3.5e+03      97     131 ..     368     402 ..     363     429 .. 0.81
   4 ?   11.8   0.0   6.9e-05      0.16       2      80 ..     438     514 ..     437     527 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.75
    PF13307.1  44 keesrekvleeykeskgaillavc 67 
                  ++e++e++++e ++++ ++l++v 
  MMETSP0890-20130614|32540_1 118 RKEEEERLIQEARRAQTQALVSVQ 141
                  578889999999999999988886 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.2
    PF13307.1  14 vffpSyslleevverlke.....e 32 
                  v++pS +l +++ +++++     +
  MMETSP0890-20130614|32540_1 271 VLCPSRELARQTRDVIQKfseclR 294
                  778888888888887777333331 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.5
    PF13307.1  97 dpeveakreyldekgkdafkewylpqalravnQai 131
                  d+ev++  ++++++++    ++ +pq +r + Qa+
  MMETSP0890-20130614|32540_1 368 DQEVQQIINFFQHQRQTLLFSATMPQKIRDFAQAV 402
                  56777777777777777777777777777777775 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 6.9e-05
    PF13307.1   2 lellkvvpggvlvffpSyslleevverlkeeleskkievfeek.eesrekvleeykeskgaillavcrgkvseGidfsdd 80 
                  le+l+++   v++f+   + +++++e+l  +   + + +   k +++r++ l+ ++++++ +l+a+      +G+df+d 
  MMETSP0890-20130614|32540_1 438 LECLQKTAPPVVIFCERKKDVDDIYEYLLLKEI-DAVAIHGDKhQQERNDALSAFRNNQKDVLVATD--VAAKGLDFPDI 514
                  67888888899***************9986654.344444444499*********************..999******73 PP

>> PF14392.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00013       0.3      34      49 .]     597     612 ..     595     612 .. 0.96

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    PF14392.1  34 CfiCgrlgHsdkeCpk 49 
                  C +Cg lgH   eCpk
  MMETSP0890-20130614|32540_1 597 CAFCGGLGHRITECPK 612
                  **************97 PP

>> PF00098.18  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       1.3   2.9e+03       5      10 ..     538     543 ..     538     543 .. 0.87
   2 ?   13.6   1.0   1.9e-05     0.043       2      18 .]     596     612 ..     595     612 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.3
                  ------ CS
   PF00098.18   5 nCGkeG 10 
                  +CGk G
  MMETSP0890-20130614|32540_1 538 RCGKAG 543
                  6***98 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.9e-05
                  --S------------SS CS
   PF00098.18   2 kCynCGkeGHlardCpe 18 
                  +C  CG+ GH+  +Cp+
  MMETSP0890-20130614|32540_1 596 GCAFCGGLGHRITECPK 612
                  799*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      387  (0.028306); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.99u 0.44s 00:00:01.43 Elapsed: 00:00:00.88
# Mc/sec: 1737.36
//
Query:       MMETSP0890-20130614|32569_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 406.05
//
Query:       MMETSP0890-20130614|32562_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-05   21.7   0.8    6.4e-05   21.7   0.5    1.0  1  PF07690.11 Major Facilitator Superfamily
     0.0013   17.2   2.0     0.0014   17.1   1.4    1.1  1  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.5   9.4e-09   6.4e-05     212     296 ..      30     111 ..       4     115 .] 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 9.4e-09
   PF07690.11 212 llialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglalla 296
                  + + +++ ++++ ++++ +pl  ++ ++l+ g ++++ + + l+++g++gal ++ l+d +gr +  ++a +++ll++ +++ ++
  MMETSP0890-20130614|32562_1  30 ASLNSVSLGTAIGLVTQISPLV-KDAFNLG-G-TEVSCYQASLGFFGIFGALSASTLMDPYGRLPSFVIASAAFLLGTGIVCSAN 111
                  4455555566777799999996.*******.8.88888999999999999************98888888888888887766555 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.4   2.1e-07    0.0014      41      98 ..      64     112 ..      26     115 .] 0.72

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.1e-07
   PF00083.19  41 keessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaaka 98 
                  +++         +s+ + +++G+l+a++l+d +GR +s+++a++ f+ g+ +   a++
  MMETSP0890-20130614|32562_1  64 CYQ---------ASLGFFGIFGALSASTLMDPYGRLPSFVIASAAFLLGTGIVCSANG 112
                  443.........66667789*******************************9999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.31s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 372.41
//
Query:       MMETSP0890-20130614|32568_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-20   72.1   0.0    1.5e-19   69.9   0.0    2.1  2  PF00270.24 DEAD/DEAH box helicase
    1.4e-08   34.3   0.0    3.1e-08   33.2   0.0    1.6  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   2.3e-23   1.5e-19       1     169 [.      53     263 ..      53     268 .. 0.77
   2 ?   -0.9   0.0      0.12   8.4e+02      12      45 ..     369     404 ..     362     527 .. 0.73

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 2.3e-23
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCH..HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT...........................................SEEEEEESS-THH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................xxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl..nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr...........................................lqvivlSATlpkd 169
                  t+iQ++a   + +g + l++aeTGsGK+lafl+p+l +l+  ++  ++  ++++aPtreLa q +++++ + k +  ++ li   +a a     +l++ ++ +v+Tp+ +++ ++  +l  +l + r ++lDE+d ll    +d   +  +  ++ k+                                           lq++  SAT++++
  MMETSP0890-20130614|32568_1  53 TEIQRAACSSLRNGMSALLCAETGSGKSLAFLLPCLFRLIFFDD--EEACIMVLAPTRELAVQLATEASALSKALFNQEDLIELVTAGAATSIGRLRR-ARCIVATPREWMQAFEGSRLatKLGSTRSIILDEIDALLPPAEKDYRSKRSKERARSKSgakagtltaaerkkrqiqidvnmrqypaahalrtllkanprcdLQLVGASATASRK 263
                  79*******999************************77776544..6779999***************999999434444442222223355677766.9***************9666635566*************9655553333333334444456667777777777788899999999999999999999999999999999998844 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.12
                  HSS-EEEEEC-TT---HHHHHHHHHHHHHH..H..T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
   PF00270.24  12 lgggdvlvaaeTGsGKTlaflipvlqilletlk..k 45 
                  ++ ++ lv    GsG T+a   +++  ll+ +k  k
  MMETSP0890-20130614|32568_1 369 IQPRSALVFLTEGSGYTIAKTSALVAELLQDDKrfK 404
                  455667777777888888888888888877655332 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.5e-12   3.1e-08      34      77 ..     445     495 ..     399     496 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 4.5e-12
                  S.......SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------T CS
   PF00271.26  34 s.......kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRa 77 
                          +vl++  + +rG+ +++v++V  ++lp++++sy++ +GR+gR 
  MMETSP0890-20130614|32568_1 445 QdqytaqsPVLFTFEATARGLHFDAVDLVLVVGLPKTPSSYLHLAGRAGRR 495
                  366666669*****************************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.90
# Mc/sec: 1485.74
//
Query:       MMETSP0890-20130614|32603_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   70.1   0.1      3e-19   69.7   0.1    1.1  1  PF03747.9 ADP-ribosylglycohydrolase


Domain annotation for each model (and alignments):
>> PF03747.9  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.1   2.2e-23     3e-19       1     189 [.       5     247 ..       5     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 2.2e-23
                  --------------TTTT--HH..HHHHH-----S..............................................--S--STT----------HHHHHHHHHHHCHH...-H-HHHHHHHHHHHHHC........T--S----HHHHHHHHCHH--.............--B---.GCC-CCH.HHCCTSTHCCHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHTT--CCHHHHCH CS
    PF03747.9   1 gallGlavGDAlGlpvefwsyd..rirraygegge..............................................eggigggghggkkagdwtddtqmalllaesllengeldeedfaarllarWletp....gdtaprdiGsttraalrnlesgepaaeagaqa..ansagnGa.lmRiapl.glvlagdpeellelareaarlTHgdpravaaavayaaliaallrgkslsealdaa 189
                  gal  l+ GDAl++p++ w+yd  +i   yge  +                                                ++++++h ++++g++t  +q+ ++l+ s++++ +++ +  a+++++++++ +      ++  + ++++r ++rnl sg+p +++  ++  + ++ +G  l  ++ l +++l +d++++ ++a+++ r+T ++    +aa +++  +++++  + l+ea+ ++
  MMETSP0890-20130614|32603_1   5 GALWALFSGDALAAPTH-WYYDtrQISVDYGEIKDytkpvlklpgsimaksntdgagrgtynqymktvigdfinigkkrfwSPHESYHYHCTLEKGENTLEAQLVRVLLGSIIKSSSTNSQTWADQFRQDYIH-FmttpNSHNDAYASTAHRMFFRNLLSGIPEENCPDNDhhNVDTIDGLvLPTVSALtAIYLGQDQAAVRQAAIDIIRVTRNSRALERAAYIWVDVLYSAFFSQHLDEAIFEN 247
                  899**************.*********99999999*********************************************9999******************************8777889999999999888.55687899999999********************9996544444443134555566888888999999******************************8888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.72
# Mc/sec: 888.65
//
Query:       MMETSP0890-20130614|32605_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   31.4   7.3    1.1e-06   28.0   0.0    3.1  3  PF11976.3 Ubiquitin-2 like Rad60 SUMO-like


Domain annotation for each model (and alignments):
>> PF11976.3  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.9      0.36   4.9e+03      49      70 ..      86     107 ..      84     108 .. 0.72
   2 !   28.0   0.0   8.3e-11   1.1e-06      20      71 ..     191     241 ..     186     242 .. 0.95
   3 !    6.7   0.0   0.00037         5       7      62 ..     303     359 ..     296     365 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.36
                  -B--TTSBGGGSS--TTEEEEE CS
    PF11976.3  49 erLdpndtvedldiedgdtidv 70 
                  e+L+p ++v+ +   d+d+id+
  MMETSP0890-20130614|32605_1  86 EPLEPAMVVDMTLDDDNDEIDL 107
                  5677777776666678899997 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 8.3e-11
                  TSBHHHHHHHHHHHHT----TT-EEE----B--TTSBGGGSS--TTEEEEEE CS
    PF11976.3  20 dttlskLieayrkkkgipeeeqvrLiFDGerLdpndtvedldiedgdtidvv 71 
                  ++ ++ + + +++++g++  +  ++ FDG + +  +t+++l++e++d+idv+
  MMETSP0890-20130614|32605_1 191 KESFERIFQSFAQERGVDV-KDCTFSFDGLPFNSSATPKELEVEEDDQIDVR 241
                  5678999************.******************************96 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00037
                  ESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEE-..---B--TTSBGGGSS- CS
    PF11976.3   7 gkdgkevkikVkpdttlskLieayrkkkgipeeeqvrLiF..DGerLdpndtvedldi 62 
                  ++d k  k+++  d+ ++k +++y kkk++   +   ++   D+  +d ++t++ +d+
  MMETSP0890-20130614|32605_1 303 DSDRKAQKFRIHDDDAFEKALSHYVKKKSLHL-SACSFMTkaDHLSIDVTKTPAHYDL 359
                  46777999********************9987.5555543115555566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1304  (0.0953774); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:01.12
# Mc/sec: 795.93
//
Query:       MMETSP0890-20130614|32611_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 1005.04
//
Query:       MMETSP0890-20130614|32624_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.44s 00:00:00.67 Elapsed: 00:00:00.62
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|32628_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    8.9   5.8          1    9.4   2.5    1.8  2  PF01021.14 TYA transposon protein


Domain annotation for each model (and alignments):
>> PF01021.14  TYA transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.5   7.6e-05         1      14      92 ..      43     124 ..      37     132 .. 0.77
   2 ?   -1.5   0.0      0.19   2.6e+03      35      56 ..     143     164 ..     129     173 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.6e-05
   PF01021.14  14 qdpldvsaskl..eeydkastkansqqettpvssavpenahhaspqtaqvplp.qnGpyqqqcmmtpnqanasgwsvygrps 92 
                    p+++s  ++  +e  k+s+ +n  +++t +  a p  +    p +a + +p qn   + q  +   +  as+w   ++p+
  MMETSP0890-20130614|32628_1  43 TTPVKISLQEIiqQEERKTSSTSNKHKSKTSTPVAWPVQESRLVPLAAFMTSPaQNNTQNDQPALPAPRNLASSWRGLDQPK 124
                  468888888763245556666677777788888899999999******988775888888888888899999***9988886 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.19
   PF01021.14  35 nsqqettpvssavpenahhasp 56 
                   + +  +p s av      +s 
  MMETSP0890-20130614|32628_1 143 HAERRSSPWSGAVARHIREISN 164
                  3445566777777665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.52s 00:00:00.82 Elapsed: 00:00:00.66
# Mc/sec: 639.03
//
Query:       MMETSP0890-20130614|32637_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0074   15.8   0.8      0.019   14.5   0.6    1.7  1  PF08833.5 Axin beta-catenin binding domain
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.21   11.3   0.0    1.7  1  PF08707.6 Primase C terminal 2 (PriCT-2)


Domain annotation for each model (and alignments):
>> PF08833.5  Axin beta-catenin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.6   2.8e-06     0.019       3      14 ..      39      50 ..      38      53 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.8e-06
    PF08833.5  3 dpqsILDdHvsR 14
                 d+++ILDdH sR
  MMETSP0890-20130614|32637_1 39 DDEDILDDHFSR 50
                 9**********9 PP

>> PF08707.6  Primase C terminal 2 (PriCT-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.21      21      53 ..      92     129 ..      67     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.1e-05
    PF08707.6  21 lkvgmalksefdg.....seeglelwdewSkksskydp 53 
                    v m+l+s +d+     +ee+l+ ++++S++ss+y +
  MMETSP0890-20130614|32637_1  92 RSVDMSLHSSTDEflfdqEEEYLRTFNRASRTSSSYPK 129
                  5677899998877777668***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 605.62
//
Query:       MMETSP0890-20130614|32634_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.77
# Mc/sec: 1070.58
//
Query:       MMETSP0890-20130614|32631_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-22   78.2   0.4    4.3e-22   77.4   0.3    1.3  1  PF01302.20 CAP-Gly domain
    8.9e-18   63.6   1.5      2e-17   62.5   1.0    1.7  1  PF00226.26 DnaJ domain
     0.0038   16.6   0.1      0.024   14.0   0.1    2.3  2  PF12105.3  SpoU, rRNA methylase, C-terminal
  ------ inclusion threshold ------
      0.026   11.8   0.0      0.035   11.4   0.0    1.0  1  PF04602.7  Mycobacterial cell wall arabinan synthesis protein
      0.027   13.6   0.4      0.038   13.1   0.2    1.3  1  PF11838.3  Domain of unknown function (DUF3358)
       0.21   11.3   6.8      0.052   13.3   2.5    1.6  2  PF03235.9  Protein of unknown function DUF262
        7.7    6.2   7.6        3.4    7.3   0.7    3.1  3  PF05002.10 SGS domain


Domain annotation for each model (and alignments):
>> PF01302.20  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.3   2.2e-25   4.3e-22       1      66 [.     300     363 ..     300     365 .. 0.96

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 2.2e-25
                  -----EESSSS-B----------S.S-----B----SS--------------S---TT----B-GG CS
   PF01302.20   1 vgkrvevdpekerrGtvryvGpvptfksgiwvGveldeprGkndGsvdGvrYFeckpkrGvFvkpe 66 
                  +g+r++v  +++  G+v++vG v+  + g++vG+ ldep GkndG+v+G++YF+c+pk+G+Fv+ +
  MMETSP0890-20130614|32631_1 300 IGDRAQV-RSSGLCGIVKFVGDVH-YARGEFVGIALDEPLGKNDGTVKGKSYFTCSPKHGIFVRRN 363
                  79*****.899*************.999***********************************976 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   1.0     1e-20     2e-17       4      58 ..      28      81 ..      25      87 .. 0.94

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 1e-20
                 HHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHH CS
   PF00226.26  4 eiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpe 58
                 +iLgv+++ s+e++kkaYrk +lk HPDkn +d+ +a+ekf+++neAy  L+d +
  MMETSP0890-20130614|32631_1 28 KILGVNEEDSEEKVKKAYRKSCLKSHPDKNLQDP-KAKEKFQQLNEAYRCLTDVN 81
                 8*********************************.9****************965 PP

>> PF12105.3  SpoU, rRNA methylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.2e-05     0.024      21      43 ..      98     120 ..      81     122 .. 0.77
   2 ?   -0.9   0.0      0.56   1.1e+03      16      31 ..     122     137 ..     121     139 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-05
    PF12105.3  21 rlLFewgyPelakvcrrkglpYP 43 
                  + +F   y e++++crr g+pYP
  MMETSP0890-20130614|32631_1  98 ERMFNDMYQEFKQMCRRAGIPYP 120
                  468******************** PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.56
    PF12105.3  16 eeeyqrlLFewgyPel 31 
                  +e+ ++l+F +g P+l
  MMETSP0890-20130614|32631_1 122 PETAKQLFFANGIPDL 137
                  688999******9998 PP

>> PF04602.7  Mycobacterial cell wall arabinan synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05     0.035      85     153 ..     269     336 ..     253     358 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.8e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04602.7  85 tvPkqgkdaakngllveankdrvvvivrdvvvvsapreavaa.paCselevtadadavaaefvGltqeaa 153
                  t+ +  ++  +n  l e n+++  v  ++v++   +r +v + + C  ++++ d++ + +efvG++ +++
  MMETSP0890-20130614|32631_1 269 TTTATNQKIHTNNHLCEENNKD--VQQQNVIISIGDRAQVRSsGLCGIVKFVGDVHYARGEFVGIALDEP 336
                  3333445555666677776665..5689************87589********************97554 PP

>> PF11838.3  Domain of unknown function (DUF3358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     2e-05     0.038     101     202 ..      97     201 ..      62     233 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2e-05
    PF11838.3 101 lkkfvrklvap...lleklgwepgessdhqeaqlralllslaggdeevsaeakklfkalldgteslklsidpdlrwsvfnalaan.gnakeykeilaelkrdksad 202
                  ++++ ++++++     +++g +  + + +++ ++ + +  l g+  +    + + +++ll g+++ ++++d+dl + +++ +aan ++  + ++i++++ + + +d
  MMETSP0890-20130614|32631_1  97 MERMFNDMYQEfkqMCRRAGIPYPDPETAKQLFFANGIPDLSGDEDDLNNIQEQDLQSLLFGDKN-SIQVDNDLFQNIVTSIAANkDDDHDNEQIQDIFSSMNKDD 201
                  44444444333111556666666666889999999999999999999999***********9776.68*****************555556999999988877655 PP

>> PF03235.9  Protein of unknown function DUF262
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.5   2.7e-05     0.052     101     205 ..      50     199 ..       9     209 .. 0.63
   2 ?   -3.4   0.0       3.6   6.9e+03     112     131 ..     269     288 ..     238     299 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
    PF03235.9 101 deqrikrr.eresdkellqklirseklsllekeelaelnsltkkdl.akeekrneeknlikayevieeilksa..............................................llsalktklslieiele....deddedqayeiFerlNs 205
                   +++ + + ++ ++ke++q+l++        ++ l++ n +t++dl ++e + + e+ ++++y+ +++++++a                                              +++   + +++i+ ++     d+ d++q+++iF ++N+
  MMETSP0890-20130614|32631_1  50 LKSHPDKNlQDPKAKEKFQQLNEA-------YRCLTDVNYQTEDDLtEEELRAEMERMFNDMYQEFKQMCRRAgipypdpetakqlffangipdlsgdeddlnniqeqdlqsllfgdknSIQVDNDLFQNIVTSIAankdDDHDNEQIQDIFSSMNK 199
                  222221221222222222222222.......333445556666666455555555666667777777777777*************************99999999998888887777744333344555555554444377999***********7 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.6
    PF03235.9 112 sdkellqklirseklsllek 131
                  ++++  qk+  ++ l ++++
  MMETSP0890-20130614|32631_1 269 TTTATNQKIHTNNHLCEENN 288
                  44444444444444444442 PP

>> PF05002.10  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.55   1.1e+03      36      53 ..      36      53 ..      34      72 .. 0.81
   2 ?    7.3   0.7    0.0017       3.4      11      44 ..      82     115 ..      64     117 .. 0.78
   3 ?    0.8   0.1      0.18   3.6e+02      14      35 ..     178     199 ..     163     227 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.55
                 ----CHHHHHHHHHHCT- CS
   PF05002.10 36 nadedtkrammKsfveSq 53
                 +++e++k+a  Ks ++S 
  MMETSP0890-20130614|32631_1 36 DSEEKVKKAYRKSCLKSH 53
                 677888888888888775 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0017
                  XXXXXXXXXXXX----HHHHHHHHT----CHHHH CS
   PF05002.10  11 kekekkkdeeeeseelnklfkklYknadedtkra 44 
                   ++e++ +eee  +e++ +f+++Y++  +  +ra
  MMETSP0890-20130614|32631_1  82 YQTEDDLTEEELRAEMERMFNDMYQEFKQMCRRA 115
                  456777788888899**********999988887 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.18
                  XXXXXXXXX----HHHHHHHHT CS
   PF05002.10  14 ekkkdeeeeseelnklfkklYk 35 
                   ++kd+++++e+++++f  + k
  MMETSP0890-20130614|32631_1 178 AANKDDDHDNEQIQDIFSSMNK 199
                  4556666666679999988855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1055  (0.077165); expected 273.4 (0.02)
Passed bias filter:                      496  (0.0362785); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:00.73
# Mc/sec: 1224.44
//
Query:       MMETSP0890-20130614|32635_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-67  225.7   0.1    4.5e-67  225.1   0.0    1.3  2  PF03587.9 EMG1/NEP1 methyltransferase


Domain annotation for each model (and alignments):
>> PF03587.9  EMG1/NEP1 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.33   4.5e+03      30      44 ..      20      34 ..      16      36 .. 0.77
   2 !  225.1   0.0   3.3e-71   4.5e-67       1     202 []      46     245 ..      46     245 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.33
                 TT-TTGGG---THHH CS
    PF03587.9 30 kklkkeakeaRpDiv 44
                 +k+kk+ + + pD+v
  MMETSP0890-20130614|32635_1 20 SKKKKDDDAIIPDVV 34
                 467789999999998 PP

  == domain 2    score: 225.1 bits;  conditional E-value: 3.3e-71
                  EEEEEES--B--G.-GGGSB--HHHHGGG-TT-TTGGG---THHHHHHHHHHHT-S--S...-EEEEEE----EEEE-TT----SSHHHH---HHHHHHHSEEE--.-.-EEEEEE----TTTT--.-EEEEE--------HHHHT--.......-EEEEE---------HH.HHHH--.EEE--------HHHHHHHHHHHHH CS
    PF03587.9   1 ivLeeatLetvkv.kesfelLnaddhadilkklkkeakeaRpDivHqcLlalldsplnkagllqvyihTkknvlIeVspqlRvPrtfnrFaglmvqLLkklsvraengkekLlkviknpitdhlpegtkiialsesgekvdlkefvksaqknglqqvafvigamskgdfsmkieykkae.eeislsdypLsaaavcskittafe 202
                  ++L+ea+Le+vk+ k +f+lLn+ddh++il+k+ ++++e+RpDi Hq L+a+ldsplnkagll+vy++Tk+nvlI V+p +RvPrt++rFaglm qLL+kl++ra++ +++L+kviknp+++hlp+gt ++++s++g+k ++ +f++   + +++++a+v gam++g  s + +  +   + +++sdypLs a+++ +++ a+e
  MMETSP0890-20130614|32635_1  46 VILDEASLEIVKTrKGEFTLLNSDDHRTILSKHDRDPAECRPDIAHQELMAALDSPLNKAGLLKVYVRTKQNVLIDVHPMVRVPRTYKRFAGLMCQLLHKLKIRAADAPQTLFKVIKNPVERHLPPGTLLYGFSKNGTKYSPHHFAA--SLPDNKPIALVFGAMATGSISRD-NHPS-MlDMVCVSDYPLSGAVAMNRVLGAIE 245
                  79**********97889**********************************************************************************************************************************..445569*************6666.3333.3599***************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 859.27
//
Query:       MMETSP0890-20130614|32649_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 207.68
//
Query:       MMETSP0890-20130614|32662_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.18   10.7   9.8       0.21   10.5   6.8    1.2  1  PF02510.9  Surface presentation of antigens protein
        4.3    7.1  14.8        5.2    6.9  10.3    1.1  1  PF08505.5  Mitochondrial Myo2 receptor-related protein


Domain annotation for each model (and alignments):
>> PF02510.9  Surface presentation of antigens protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.8     3e-05      0.21      95     164 ..      35     102 ..       3     137 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3e-05
    PF02510.9  95 iaekllkvtaeksvtlvavvkkvdksaallsskngqleevsskklsadlkavesvseladnvtevsddnv 164
                   a    kv aek  +   v++  + +aa + s n   +e  + k  ++ kave+ +++a  vt +++   
  MMETSP0890-20130614|32662_1  35 AA--EAKVEAEKQAAAAKVEAEKQATAAKVESENKAKKEAEAVKAETEKKAVETAADVAAGVTSIAERTT 102
                  33..369**********************************************99999988888876544 PP

>> PF08505.5  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.3   0.00077       5.2      64     167 ..      13     116 ..       3     139 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00077
    PF08505.5  64 kats.qaqnsapqpsnsektsesaleqvttikesleQlrtqkevvqakknkernspsvkderaskhareklvisnteqalsgstaneektlq.pepgslkqkpsse 167
                  ka+  +a++++    + e++++ a ++  +++++ + +++++e+++++ + e++++  k+ +a k + ek +++ + +   g t  +e+t++  ++g  k+   ++
  MMETSP0890-20130614|32662_1  13 KAAAeKAAAENAAFAKAEAEKKAAEAK-VEAEKQAAAAKVEAEKQATAAKVESENKAKKEAEAVKAETEKKAVETAADVAAGVTSIAERTTEtSNDG-GKESLVEH 116
                  332212223333333333333333333.3344444567777799999999999999999999********************999999988853333.33332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2482  (0.181539); expected 273.4 (0.02)
Passed bias filter:                      787  (0.0575629); expected 273.4 (0.02)
Passed Vit filter:                       193  (0.0141164); expected 13.7 (0.001)
Passed Fwd filter:                        66  (0.00482738); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.05u 0.46s 00:00:01.51 Elapsed: 00:00:01.26
# Mc/sec: 275.77
//
Query:       MMETSP0890-20130614|32678_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-08   33.3   0.1    6.6e-08   32.9   0.1    1.2  1  PF00175.16 Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
       0.04   13.2   0.0      0.088   12.0   0.0    1.6  2  PF04405.9  Domain of Unknown function (DUF542)
       0.14   11.7   0.0       0.21   11.2   0.0    1.2  1  PF02196.10 Raf-like Ras-binding domain


Domain annotation for each model (and alignments):
>> PF00175.16  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.5e-11   6.6e-08      62     108 ..       2      49 ..       1      50 [. 0.89

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.5e-11
                  TTTTCSSSSBB--HHHHHHHCHHH..HHHCTTTEEEEEE-HHHHHHHHH CS
   PF00175.16  62 srtddgwkggkgyvtdalleelle..eeidkeetdvyvCGppgMakavr 108
                  sr++ +++ggk+y++d++ e+++e  + + ++++++y+CG +gM+  ++
  MMETSP0890-20130614|32678_1   2 SREQTNQRGGKMYIQDKVEEYADEifDRL-EKGAHMYFCGLKGMMPGIQ 49 
                  7999**************88888897777.66*************9887 PP

>> PF04405.9  Domain of Unknown function (DUF542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.73   3.3e+03      46      53 ..      24      31 ..      18      32 .. 0.68
   2 ?   12.0   0.0   1.9e-05     0.088      32      55 ..      50      73 ..      47      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.73
    PF04405.9 46 eevlaeLe 53
                 +e++++Le
  MMETSP0890-20130614|32678_1 24 DEIFDRLE 31
                 56666666 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.9e-05
    PF04405.9 32 vsLaeAckekgldleevlaeLeal 55
                 + L+ +c++kgld +e++ +L+++
  MMETSP0890-20130614|32678_1 50 DMLKGVCEKKGLDYDEFIGKLKKA 73
                 56899****************975 PP

>> PF02196.10  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.5e-05      0.21      23      40 ..      48      65 ..      44      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHH----GGG CS
   PF02196.10 23 vrDaLskalkrrgLnpsa 40
                 ++D+L+++++++gL+ ++
  MMETSP0890-20130614|32678_1 48 IQDMLKGVCEKKGLDYDE 65
                 79************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      493  (0.0360591); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.95
# Mc/sec: 204.32
//
Query:       MMETSP0890-20130614|32684_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 381.53
//
Query:       MMETSP0890-20130614|32697_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22   11.9   1.1       0.28   11.6   0.8    1.2  1  PF04692.8 Platelet-derived growth factor, N terminal region


Domain annotation for each model (and alignments):
>> PF04692.8  Platelet-derived growth factor, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8     2e-05      0.28      45      74 ..      29      57 ..      16      60 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
    PF04692.8 45 akashknkhvedkksrqllsRrkRsivEeA 74
                 +ka  k+ h  + + ++ ++R+kRs+v  A
  MMETSP0890-20130614|32697_1 29 HKALTKQ-HHPQEEMEKFQKRKKRSVVKKA 57
                 3333333.345666899**********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1081  (0.0790667); expected 273.4 (0.02)
Passed bias filter:                      734  (0.0536864); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.46s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 233.16
//
Query:       MMETSP0890-20130614|32702_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.034   14.0   1.4      0.048   13.5   1.0    1.1  1  PF08505.5  Mitochondrial Myo2 receptor-related protein
       0.05   13.5   5.5      0.074   12.9   3.8    1.2  1  PF06818.10 Fez1
      0.063   12.8   6.8       0.31   10.6   0.0    2.2  2  PF10107.4  Endonuclease related to archaeal Holliday junction resolvase


Domain annotation for each model (and alignments):
>> PF08505.5  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   1.1e-05     0.048     115     203 ..      36     127 ..      31     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
    PF08505.5 115 rnspsvkderaskhareklvisnteqalsgstaneektlqpepgslkqkpssetkkegkrfrsvssvssssst.vdlnelp..kelnldalp 203
                  ++++s+ +er +++++ + v++++ + l+    +  +t+++++ +  + +++++++  +   ++    +   t vd++++   k++nl a p
  MMETSP0890-20130614|32702_1  36 KETESFARERENEMNEIEAVLKQEISELEAVEQCIDTTEKEQKVKQLESIAKQREALINGTSIFKGLNTAEYTsVDFQDMTsgKAMNLSAQP 127
                  6889************999***99999999999999********************999999999887777777******744678887766 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.8   1.6e-05     0.074      35     152 ..      30     139 ..      24     161 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
   PF06818.10  35 sLraqlrearaelqeseeklqelkdalrtktleLevceneLqrkkseaellrekagrleaelaelrealasagtlkedclllsesdeakarrqageetlrelrrqverlraeLkeerr 152
                   Lr +++e+ +  +e+e++++e+++ l+    eLe+ e+ +  + +e+++      +le  +a+ real +  t   ++l+ +e   +  +  + +++  +l++q +    e+ +er+
  MMETSP0890-20130614|32702_1  30 ILRKAVKETESFARERENEMNEIEAVLKQEISELEAVEQCIDTTEKEQKVK-----QLE-SIAKQREALING-TSIFKGLNTAEYTSVDFQDMT-SGKAMNLSAQPKVRAREILKERQ 139
                  69*************************************996665555443.....333.344455555442.333444444444444443333.33333333332222223333333 PP

>> PF10107.4  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   4.1     0.047   2.1e+02      23      74 ..      36      92 ..      25      97 .. 0.52
   2 ?   10.6   0.0   6.8e-05      0.31     107     149 ..      98     141 ..      95     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.047
    PF10107.4 23 rarelfeqlkkaereel....eaqveeeaeakleewkkkeekeirk.davkksravl 74
                 +++e f++ +++e++e+    +++++e ++++   +++++e+++++ ++++k+r+ l
  MMETSP0890-20130614|32702_1 36 KETESFARERENEMNEIeavlKQEISELEAVEQCIDTTEKEQKVKQlESIAKQREAL 92
                 334555555566666663334333333333333334445555554438999888754 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 6.8e-05
    PF10107.4 107 vFdglsegeveeivfvevKtGksakLsereka.vreaieagrvr 149
                  +F+gl+ +e +++ f ++ +Gk+ +Ls + k   re++++++v 
  MMETSP0890-20130614|32702_1  98 IFKGLNTAEYTSVDFQDMTSGKAMNLSAQPKVrAREILKERQVY 141
                  8**************************98875267777887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1280  (0.093622); expected 273.4 (0.02)
Passed bias filter:                      586  (0.0428613); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 607.77
//
Query:       MMETSP0890-20130614|32707_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   11.3   0.2       0.24    9.5   0.1    1.7  2  PF11885.3 Protein of unknown function (DUF3405)


Domain annotation for each model (and alignments):
>> PF11885.3  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   1.8e-05      0.24     211     244 ..      38      70 ..      10      88 .. 0.64
   2 ?   -0.9   0.0     0.025   3.4e+02     345     378 ..      78     110 ..      74     132 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.8e-05
    PF11885.3 211 lplqlFalqhpeydffwnwEmDvRytG.hyyefle 244
                   ++  F    + + ++w +E D+Ry G ++ e+++
  MMETSP0890-20130614|32707_1  38 AAVPDF--PKKGFRHIWVIEEDSRYAGgNWSEVFN 70 
                  233333..345799***********8548888776 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.025
    PF11885.3 345 dvtgysetgstpR.rasiitasRlSrrLleamhee 378
                  d+  ys++  t+R  a++++  R+S +L +a+ ++
  MMETSP0890-20130614|32707_1  78 DLVAYSRK--TNRgLAALMAVARVSTKLFQAVSNA 110
                  56667555..566257889999*******998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.87
# Mc/sec: 716.15
//
Query:       MMETSP0890-20130614|32713_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      160  (0.0117028); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 404.16
//
Query:       MMETSP0890-20130614|32715_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-54  182.2   0.1    3.9e-52  176.9   0.0    2.0  1  PF10275.4  Peptidase C65 Otubain
  ------ inclusion threshold ------
      0.021   15.2   0.0        2.1    8.8   0.0    2.3  2  PF02338.14 OTU-like cysteine protease


Domain annotation for each model (and alignments):
>> PF10275.4  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.0   5.7e-56   3.9e-52       3     243 ..      14     268 ..      12     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 5.7e-56
    PF10275.4   3 ekqrplvsekepl.saLakeyaka.dpaylkkikelkekysgirrvrgDGnCfYrafafsyleiLlekkdde.....................everfierieklkealkalgideelvedfleeflellkkleskeeeseeeeellkafndqe.qsdyivvflRlltsaeikenadeykpfideld.lltveefCeqeVepvnkeadnvqikaLaealgipvrveyldrsvegeevnehefpeeseekapkItLLyrPgHYdIly 243
                  ++++p+v+ek+ + s+L++ey ++  + +l+ i+ l++ky+++rrvr DGnCfYr f+++yle L++ + +                      e+ r++  +e++k++l ++g++   + +f e flell+++ + + +     +l++ +nd++ +s  +v f+R l +++ik n d++ pfi+++  + +v++fC+++Vepvn+e+++vqi+aL e l+ipv +eyld s     +    fp   e+ +p++ LLyrPgHYdIly
  MMETSP0890-20130614|32715_1  14 TDSQPMVGEKQGIaSTLTEEYVNNpMKGFLNGIQILDSKYIAMRRVRKDGNCFYRGFLYRYLEALVSAQLEFtkhhttsteystttnseyrvpELIRIRTIVEESKSKLLSVGYEASAMDMFWEMFLELLDEVPTLDLQ-----TLHTKMNDEKgISPHVVWFCRALSATQIKINVDRFAPFIMDEFgNVDVDQFCRTQVEPVNHECEQVQIIALTEMLQIPVAIEYLDAS---GATSCLVFP---ESAQPTVKLLYRPGHYDILY 268
                  678999***9766378*******99999**************************************99985567778888899999999888888888999999999999************************55543.....688888876616777************************764489****************************************77...444445554...5789***************9 PP

>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.007        48       2      11 ..      61      70 ..      60     105 .. 0.79
   2 ?    8.8   0.0   0.00031       2.1      30      91 ..     173     241 ..     156     264 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.007
                 ----HHHHHH CS
   PF02338.14  2 gDGnCLfhav 11
                  DGnC+++ +
  MMETSP0890-20130614|32715_1 61 KDGNCFYRGF 70
                 7******976 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00031
                  HSS--HHHH-------------.................-HH.HHHHHHHHHHHHTS-EEE.------- CS
   PF02338.14  30 realveylrehrelfeefleeee.....eeYlkeiskdgewg.eeieifalahilrrpiiv.lkssgge 91 
                  r   +++++ + + f +f+ +e+     +++++   ++ + + e+++i al ++l++p+ + + + +g 
  MMETSP0890-20130614|32715_1 173 RALSATQIKINVDRFAPFIMDEFgnvdvDQFCRTQVEPVNHEcEQVQIIALTEMLQIPVAIeYLDASGA 241
                  55667888899999********999*999999877666665538****************964444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.93
# Mc/sec: 695.72
//
Query:       MMETSP0890-20130614|32720_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-06   25.6   0.0    7.4e-06   24.9   0.0    1.3  1  PF07817.8  GLE1-like protein
  ------ inclusion threshold ------
      0.057   13.4   1.7        6.4    6.8   0.1    2.6  2  PF02517.11 CAAX protease self-immunity


Domain annotation for each model (and alignments):
>> PF07817.8  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.1e-09   7.4e-06     178     254 ..      59     140 ..      50     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.1e-09
                  --HHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS-CC.....-HHHHHH..---HHHHHHHHHHHH---HHHHHHHH-- CS
    PF07817.8 178 giirlYaaiiqlelrkesktehphgleegWrwlarilntepa.....tnitati..laeflevagkellrkYgkQfrKllkvil 254
                   i++l aa++ l+ + +s+   + gl++ W+wlar  n  p       +  a i  l  fle+++++l ++ ++ f  ll vi 
  MMETSP0890-20130614|32720_1  59 RIAALLAALTILDQDLQSSV--FGGLSAAWTWLARYTNRLPThpqanLDLSALIlpLIVFLEISAFALAHAADNPFLNLLTVIE 140
                  588999*********99996..999**************99998887444555522689******************9999986 PP

>> PF02517.11  CAAX protease self-immunity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00094       6.4      47      79 ..      15      96 ..      14      99 .. 0.75
   2 ?    5.1   0.1    0.0032        22      39      75 ..     113     150 ..      99     159 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00094
   PF02517.11 47 lFglaHlvngps.v................................................llafllGlvlgylylktgsl 79
                 +F+laHl + +  v                                                 +   l+ ++++l+++t++l
  MMETSP0890-20130614|32720_1 15 IFALAHLLQALVtVdpllrriiqgtllatstvtiavpdttsnaeriaallaaltildqdlqsSVFGGLSAAWTWLARYTNRL 96
                 7999999994443366667777777778888888888888888888888888888888877677777778899999988876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0032
   PF02517.11  39 lailissilFglaHlvngps.vllafllGlvlgylylk 75 
                  l++++    F+laH + +p+  ll+++ ++ l+   ++
  MMETSP0890-20130614|32720_1 113 LIVFLEISAFALAHAADNPFlNLLTVIESWWLSHNLER 150
                  677888999*******9999667766666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 688.48
//
Query:       MMETSP0890-20130614|32723_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.53
# Mc/sec: 280.33
//
Query:       MMETSP0890-20130614|32764_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-13   48.7   0.0    6.6e-13   48.6   0.0    1.1  1  PF01351.13 Ribonuclease HII


Domain annotation for each model (and alignments):
>> PF01351.13  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   4.8e-17   6.6e-13       2      60 ..      30      82 ..      29      94 .] 0.82

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 4.8e-17
                 --EEE--------EEEE--EES-HHH..HHH---TT-TTS--.--HHHHHHHHHE---EE CS
   PF01351.13  2 GiDEvGrGpvlGplvvaavivdkereeelkklgvkDSKkLse.kkreelaelikkiekrk 60
                 G+DE+GrGp++Gp+v aa+++++  +      gv DSK+ ++ + ree+++ +    + +
  MMETSP0890-20130614|32764_1 30 GVDEAGRGPLAGPVVCAACYLPPGIDV----QGVMDSKQITNeEAREEVYRRLT---TTE 82
                 9***********************996....7********96267999999999...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:01.03
# Mc/sec: 218.70
//
Query:       MMETSP0890-20130614|32755_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-33  113.5   0.0    1.5e-31  109.0   0.0    2.0  2  PF01130.16 CD36 family
    0.00093   18.2   3.2       0.14   11.1   3.3    2.8  2  PF11271.3  Protein of unknown function (DUF3068)


Domain annotation for each model (and alignments):
>> PF01130.16  CD36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.1   0.0    0.0063        43     103     154 ..       4      57 ..       3      82 .. 0.77
   2 !  109.0   0.0   2.3e-35   1.5e-31     157     465 ..     343     691 ..     328     692 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0063
   PF01130.16 103 ykqrktyvFdpeesvg..dkeddkitvpNlallgavataksaspllrllinaal 154
                  ++ ++++++ p  +       +d i+ +N ++++a+a + + ++++  +++ + 
  MMETSP0890-20130614|32755_1   4 FTYKSWWTYLPVNDEVeeRLDSDLIIQVNAVYMAAIADLGDSEQIVFAGLSSLA 57 
                  5667899999986655467789****************9997777666655444 PP

  == domain 2    score: 109.0 bits;  conditional E-value: 2.3e-35
   PF01130.16 157 lgekpfvtvtvkelLfdgyedpllslakktlk..ifkpelq.pspkfglfykrngt.sdgvytvntGkkdieklgqieswngeselsl.................wetee...cn......kinGtdGslf...ppflqk..kdtlkvFssdlCRslnlkykeevtvegiktyrfvvpeevfdntkdnpenecfCkkkkkqsaclpkGlldlskCkdgaPiilSlPHFyqadpevleaveGlk.PnkeehetfldiepttGtplqakkRlqinilvekskg....i.silkn..lpn..vilPllwveesaklddelisqlkkqlvilprivailaivllalglillllaivlv 465
                  +++ +f  ++ +e+Lf gy d++++l+ + +   +f ++ +  ++  ++ ++rn t    +y  + Gkk ++ +g++  w++ ++l +                 we++    cn            G  f    pf q+  k++ +++++++ R   +++++++tv+gik+yr+ v ++ + ++ +  +++c+ ++  +     p+ ++++s+   g  i +S+P F + d+ ++ + eGl   +++eh++++++ep+tG+ ++++ Rlq+n  + + +     + + ++n  + +  ++ P lw++ + ++++ ++++++k+++  ++++  +  +l+algl ll++a+vl+
  MMETSP0890-20130614|32755_1 343 FNSGLFTMRSPREFLF-GYHDRIFDLVPQDFAsiEFSYNGIlGFQYSSVDQQRNVTnTPLIYGQRSGKKGLKSIGEYILWRNATTLLTrdtvegkepdssfgcttWESQGyesCNiwggpfG---PRGYSFnrvDPFRQRkeKKNYQIWTTEIMRPTAIEFEKDTTVRGIKGYRYRVRDSFLRTANCTLDSQCNPDNAFY-RVHGPSYIFPMSTNAGGTRISVSFPVFGYMDEIYRSQTEGLPeFQESEHSVYVVVEPYTGFFIKGHLRLQYNYDLDDRQLtsalWtNLFSNpnITDhiLYWPFLWFDDTDSISKATARKFRKSVYLSQNLAIAFTAILIALGLSLLVAAFVLY 691
                  578899**********.************888775555555566666666669988889999************************555778999999999999954422333874443332...3454441115674443689999****************************************9999999887777.4778899*****9988899**********************87899*****************************99887666653444442233322357**********************************************999875 PP

>> PF11271.3  Protein of unknown function (DUF3068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   3.3     2e-05      0.14     147     300 ..     480     689 ..     474     690 .. 0.64
   2 !    3.9   0.2     0.003        21       4      23 ..     673     692 ..     669     745 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2e-05
    PF11271.3 147 ekksYpyfDpilrealpadyvgeeevdGlevYkFeqtvpatnld.....................sdeestqtltael.................aegsttatlyysatrtlw.............VepvtGaivkqeeqqrryladdtgk...............evtlLdakvtftdetvkslvaqAkderdqllllsri...lpivllvvGlvllvvGll 300
                  ekk Y+ + + + ++  ++++++++v+G++ Y+++   ++  l                                                     +   +++  y+ + +               Vep+tG  +k   + +  ++ d+++               +  +L   + + d+t + + a+A++ r+ + l ++    +  +l+++Gl llv++++
  MMETSP0890-20130614|32755_1 480 EKKNYQIWTTEIMRPTAIEFEKDTTVRGIKGYRYRV--RDSFLRtanctldsqcnpdnafyrvhgP-----------SyifpmstnaggtrisvsFPVFGYMDEIYRSQTEGLpefqesehsvyvvVEPYTGFFIKGHLRLQYNYDLDDRQltsalwtnlfsnpniTDHILYWPFLWFDDTDSISKATARKFRKSVYLSQNLaiaFTAILIALGLSLLVAAFV 689
                  9********************************876..4433333355555555444444333330...........14444444444444455545555666666555544455556666666778888888888888887777777777777777777777777667777777777777777777777777777754442111334455666666666655 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.003
    PF11271.3   4 saillglGvfllvvAvllpt 23 
                   ail++lG  llv+A++l +
  MMETSP0890-20130614|32755_1 673 TAILIALGLSLLVAAFVLYR 692
                  69*************99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.82
# Mc/sec: 2197.63
//
Query:       MMETSP0890-20130614|32772_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-07   30.2   0.0    7.6e-07   29.4   0.0    1.3  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    0.00085   19.4   0.0     0.0019   18.3   0.0    1.5  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.1e-10   7.6e-07       3      99 ..     223     317 ..     222     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.1e-10
    PF13640.1   3 lnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdr..........segvakevedeevv..pkpgrlvlFksdrslHrvtpvgaqgrrlaitgwf 99 
                  +n+y+  g+++pH D       +lt+l+ l+d   +++GG + ++ +++          + ++a        v  p +g++++F + ++ H+  pv ++g r+++++ f
  MMETSP0890-20130614|32772_1 223 INVYTTQGGFGPHKDH-----LALTVLIPLTDQITDFQGGGTAFWSPTDsslstdgaepKQPPAT-------VltPPKGTALIFGG-DVTHSGVPV-DRGSRVVLVASF 317
                  799************8.....79********5555**********99855887555443333333.......235***********.*********.999999988765 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.7e-07    0.0019       5      94 ..     221     314 ..     217     318 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.7e-07
                  EEEEEEES--E-EEEEEEEESSSCEEEEEEE.......T--EEEEEE-EE............SCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEE CS
   PF03171.15   5 lrvnrYpppekglglgpHtDnenriltillq.......ddggglqfrked............kwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRisla 94 
                    +n Y     ++g+gpH D     lt+l         ++ggg+ f  +             + + +  +p  + ++ fg            +v+H ++p+ rg+R++l+
  MMETSP0890-20130614|32772_1 221 PAINVYT---TQGGFGPHKDH--LALTVLIPltdqitdFQGGGTAFWSPTdsslstdgaepkQPPATVLTPPkGTALIFGG-----------DVTHSGVPVDRGSRVVLV 314
                  5689***...***********..******99999999999999999888899**976554432222222222233444444...........899***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.38s 00:00:01.00 Elapsed: 00:00:01.06
# Mc/sec: 759.60
//
Query:       MMETSP0890-20130614|32781_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-14   52.7   0.0    3.7e-14   52.6   0.0    1.0  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   2.7e-18   3.7e-14     151     248 ..       3     108 ..       1     117 [. 0.90

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 2.7e-18
                  CH-HHHHHHHHHHTCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--...HHHHHHHTCHHHHHC-CCCSSTCCH......S-SSEE---TTGGGT--HHHHHHHHHH CS
   PF00685.22 151 cgsyfdhveewlklrkkgnvlflrYEdlkkdpakeikeiaeFlGip...lekivkhlsfenmksnpvsnkskls......ekffrkgqvgdWkneltveqaekldei 248
                  ++s+++hv +w k+  +++vlf+rYE lk d+ ++i +ia  +G++    + ++k++sfe+m+++ +s+++ +s       +ffr+g  gd    ++   +e+l++ 
  MMETSP0890-20130614|32781_1   3 YSSWARHVADWSKAISDERVLFIRYENLKSDLSGCIHKIANHIGVTtvdPNIVAKYTSFEAMRAD-CSRYEPISvnwesgFQFFRRGRTGDGATAFSSTGNEALQAD 108
                  89*********************************************8888999*********97.788888889****************9988888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 494.99
//
Query:       MMETSP0890-20130614|32784_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   54.0   0.0    1.9e-14   53.4   0.0    1.2  1  PF10294.4  Putative methyltransferase
    4.7e-05   22.7   0.0      7e-05   22.1   0.0    1.2  1  PF05175.9  Methyltransferase small domain
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.014   14.7   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.022   15.2   0.1      0.056   13.9   0.1    1.6  1  PF12847.2  Methyltransferase domain
      0.031   14.2   0.0      0.051   13.4   0.0    1.4  1  PF13659.1  Methyltransferase domain
      0.041   13.4   0.0      0.078   12.5   0.0    1.4  1  PF13489.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   8.1e-18   1.9e-14      11     150 ..      24     146 ..      15     158 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 8.1e-18
    PF10294.4  11 edtgnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvk.tLkdlleke 150
                   ++g++ g++vW+ av+l+++++            +g++vlELG+GtG +G++v l     +vi+tD+   l+ll +n++     + s+v+++   W+++   d +    +D+il a ++ + d  e+L+k +L++ ++++
  MMETSP0890-20130614|32784_1  24 SHGGDGLGGQVWPGAVALAEFVLPY---------CHGKRVLELGAGTGYCGLCVSLV--ANHVIMTDQ--FLDLLAHNVAKS---NFSNVTIRYCLWNDDYIYDKT--DFFDVILGAELTPMIDGHEALAKeILRRFMQSS 146
                  45678****************9994.........5799******************9..789****95..8**********4...4899********999867764..569**************9999872455555554 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.1e-08     7e-05      18     126 ..      36     146 ..      31     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.1e-08
                  ---HHHHHH.S-TT------B-------HHHHHHHH-TT----EEES..BHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EEE-..-------.HHHHHHHHHHH--- CS
    PF05175.9  18 aGselLlet.lpkklagkvlDlGcGaGvlgaalakespelevtlvDi..narAvesakanleanklenvevlasdlleeveekkfdlivsN..PPfhagk.atelevaerliaeA 126
                  +G+  L+e  lp+ ++++vl+lG+G+G+ g+ ++   ++  v ++D+  +  A ++ak n+++  ++   +l++d +   +++ fd+i+     P+ +g+ a  +e+ +r+++++
  MMETSP0890-20130614|32784_1  36 PGAVALAEFvLPYCHGKRVLELGAGTGYCGLCVSLVANH--VIMTDQflDLLAHNVAKSNFSNVTIR--YCLWNDDYIYDKTDFFDVILGAelTPMIDGHeALAKEILRRFMQSS 146
                  566777775156669999*****************9999..88999744778888899998888887..78888888877889*****854335666666566666666666665 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.3e-06     0.014      69     127 ..      46      98 ..      35     120 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.3e-06
                  TT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEE CS
   PF01135.14  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvi 127
                  l   +g+rvLe+G+G+Gy   +++ + +++      ++     +   +n+ k++ +nv+
  MMETSP0890-20130614|32784_1  46 LPYCHGKRVLELGAGTGYCGLCVSLVANHVI---MTDQF---LDLLAHNVAKSNFSNVT 98 
                  44779*****************998766554...33333...33334555566666555 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.5e-05     0.056       2      93 ..      51     133 ..      50     146 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-05
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller...fDavllkgltldallaldeprrv 93 
                  gkr+l+lG+GtG+ +l  +      +v+  D   ++l+l+  n+ ++++ ++++++ + + +++ ++++   fD++l  +     l+++ + +++
  MMETSP0890-20130614|32784_1  51 GKRVLELGAGTGYCGLCVSL--VANHVIMTD---QFLDLLAHNV-AKSNFSNVTIRYCLW-NDDYIYDKtdfFDVILGAE-----LTPMIDGHEA 133
                  89************999999..888999986...6999999999.777889999888888.4555555544599988877.....6776444443 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.051       1      76 [.      51     121 ..      51     163 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-05
    PF13659.1   1 gdrvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellra.gsfdlvvt 76 
                  g rvl++g+G+G+  l++   + ++++ ++     ++l a+n+a+ +  ++v++r++ + d    +++   fd++++
  MMETSP0890-20130614|32784_1  51 GKRVLELGAGTGYCGLCVSLVA-NHVIMTDQ---FLDLLAHNVAKSNF-SNVTIRYCLWNDDY-IYDKtDFFDVILG 121
                  689****************998.******94...45667777777777.58899998886543.2443257888877 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05     0.078      13     103 ..      42     139 ..      38     191 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.4e-05
    PF13489.1  13 lerllarlkpggrvLDiGcGtGil..lellaengfdvt..gvDpspaaigk...................akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqia 103
                   e++l+++  g+rvL++G+GtG+   +  l +n   +t  + D+  +++ k                   +               + + fd+i+  e++  ++ +e+l ++i 
  MMETSP0890-20130614|32784_1  42 AEFVLPYC-HGKRVLELGAGTGYCglCVSLVANHVIMTdqFLDLLAHNVAKsnfsnvtiryclwnddyiyD---------------KTDFFDVILGAELTPMIDGHEALAKEIL 139
                  45666665.68***********7433555555544333345555444444344444444333333322330...............3345555555555555554444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:01.21
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|32801_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-16   57.2   0.0    1.3e-15   56.8   0.0    1.1  1  PF02153.12 Prephenate dehydrogenase
  ------ inclusion threshold ------
      0.066   13.2   0.9       0.15   12.0   0.6    1.6  1  PF01821.13 Anaphylotoxin-like domain
       0.13   12.2   0.0       0.48   10.3   0.0    1.8  2  PF11432.3  Protein of unknown function (DUF3197)


Domain annotation for each model (and alignments):
>> PF02153.12  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   2.9e-19   1.3e-15      43     184 ..       6     146 ..       4     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 2.9e-19
   PF02153.12  43 vkeadivvlavPvevvlevlkelaphlkeaa...litDvgsvKeeivkeleqllsektkfvgghPmaGteksGvkaaranlfenavviLtPtektdkealekvkelleelgakvillspeeHDrvvalvshlphvvasalaatlk 184
                  +++ d++v+av +  ++++l+ l+++lk +    litDv svKe+  k++  +l++ +++  +hPm+G+  sG +  r   f    v   +++     + e   +++e  g +++ l+ ++HD   a  + l+h++  +l +t  
  MMETSP0890-20130614|32801_1   6 AQNLDVIVMAVSIVSFEDTLRCLQQALKSSSpspLITDVLSVKEHARKAMLTHLPNSASILCTHPMFGP-DSGRDTWRSLPFVYDRVRIHDDA---IDRCERFLSIFESEGCRMVQLTCRQHDVYAANSQFLTHLIGRTLGETGL 146
                  7899*********999999999998887643333***********************************.9*****99999999999888666...446999**********************************999988654 PP

>> PF01821.13  Anaphylotoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   3.3e-05      0.15      14      35 ..     100     120 ..      98     120 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-05
                  -HHHHHTT-----HHHHHHHHH CS
   PF01821.13  14 tCeqraarindgkeCrkAFleC 35 
                   Ce+ + ++ +++ Cr+++l+C
  MMETSP0890-20130614|32801_1 100 RCERFLSIF-ESEGCRMVQLTC 120
                  6********.************ PP

>> PF11432.3  Protein of unknown function (DUF3197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0001      0.48      19      59 ..      39      81 ..      25      92 .. 0.81
   2 ?   -1.6   0.0      0.52   2.4e+03      12      39 ..     109     136 ..      97     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
    PF11432.3 19 vlitdrqderdqaryaalltlGk..eallvapafGPaygpeGa 59
                  litd    +++ar a+l +l +    l + p fGP  g +  
  MMETSP0890-20130614|32801_1 39 PLITDVLSVKEHARKAMLTHLPNsaSILCTHPMFGPDSGRDTW 81
                 59*******************99434467899****9887655 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.52
    PF11432.3  12 elsearlvlitdrqderdqaryaalltl 39 
                  e  ++r+v +t rq +   a+   l +l
  MMETSP0890-20130614|32801_1 109 ESEGCRMVQLTCRQHDVYAANSQFLTHL 136
                  5667888888888888777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 639.03
//
Query:       MMETSP0890-20130614|32807_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-06   26.3   0.0      5e-06   26.3   0.0    1.0  1  PF04408.18 Helicase associated domain (HA2)


Domain annotation for each model (and alignments):
>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.7e-10     5e-06      18      64 ..       6      53 ..       1      65 [. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.7e-10
                 B------GGGSSS-HHHHHHH---GGGT-HHHHHHHHHHHTS.---B- CS
   PF04408.18 18 LTdlGkklaelPldprlakmLllsaefgcldeiltivallsv.dsifl 64
                  T++G   ++l++d  l++++ ++a+ g ld ++t++a+ls  +s++ 
  MMETSP0890-20130614|32807_1  6 PTAMGTFVSTLGVDLSLGRLVGIGAQIGILDDAITLAAILSQsQSPWR 53
                 599***************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                      126  (0.00921592); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 247.12
//
Query:       MMETSP0890-20130614|32797_1  [L=1016]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-17   61.9   4.5    1.4e-15   56.6   1.1    3.2  2  PF11919.3  Domain of unknown function (DUF3437)
    1.5e-06   27.6  16.1        1.8    8.7   0.1    7.3  7  PF02985.17 HEAT repeat
      0.004   16.4   0.1      0.013   14.7   0.0    1.8  1  PF12348.3  CLASP N terminal
  ------ inclusion threshold ------
        9.9    6.7  22.7        4.1    7.9   0.1    5.9  6  PF13513.1  HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF11919.3  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.8   6.3e+03       3      17 ..      65      79 ..      64      80 .. 0.86
   2 !   56.6   1.1   4.1e-19   1.4e-15       5      89 ..     915    1015 ..     911    1016 .] 0.80

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.8
    PF11919.3  3 laklhgavlgLsAlv 17
                 +++lh +v g++A +
  MMETSP0890-20130614|32797_1 65 VRQLHQGVKGACAAL 79
                 6899********986 PP

  == domain 2    score: 56.6 bits;  conditional E-value: 4.1e-19
    PF11919.3    5 klhgavlgLsAlvlafPyevPkwlpsllteLarh...............ar.dpapikktvkktlaeFkrthqDtWsedkekFtedelevledtllapsYf 89  
                    + gav +L+A v afPy+vP+++p+ l+ L++h               +r +   i+ +vk+t+aeFkrth+DtW   k+ F+ +e e+l d+l+a  Y+
  MMETSP0890-20130614|32797_1  915 IRLGAVQALGATVIAFPYDVPPHVPRALVLLSKHhdlarvsssskldteSRrHHVAIRAAVKHTIAEFKRTHADTWPLIKDFFSFEESEALADVLTAGDYL 1015
                   6789************************9999873333323222222221213467999***********************************9999997 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.68   2.3e+03       7      18 ..      77      88 ..      75      92 .. 0.85
   2 !    5.3   0.0    0.0064        22       1      24 [.     208     231 ..     208     234 .. 0.92
   3 ?   -0.2   0.1      0.37   1.3e+03       6      28 ..     676     698 ..     674     700 .. 0.79
   4 !    8.7   0.1   0.00054       1.8       1      28 [.     764     791 ..     764     793 .. 0.93
   5 !    8.1   0.0   0.00083       2.8       1      29 [.     804     832 ..     803     834 .. 0.81
   6 !    8.2   0.1   0.00075       2.6       5      28 ..     850     873 ..     847     876 .. 0.87
   7 ?    1.0   0.0      0.16   5.5e+02      12      26 ..     911     925 ..     906     927 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.68
                 HHHTSSSHHHHH CS
   PF02985.17  7 kllnDpspeVRe 18
                  +lnD++ ++R+
  MMETSP0890-20130614|32797_1 77 AALNDQDDDQRA 88
                 689******997 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0064
                  HHHHHHHHHTSSSHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaL 24 
                  ll ++l+ll++++ ++R aA e L
  MMETSP0890-20130614|32797_1 208 LLDHCLTLLSHDYGDIRGAASELL 231
                  7999****************9887 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.37
                  HHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   6 lkllnDpspeVReaAaeaLgala 28 
                  l +  +    VRe   ++L+ala
  MMETSP0890-20130614|32797_1 676 LANADHAFHAVRERIGQCLAALA 698
                  5556666778**********997 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.00054
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgala 28 
                  l+P+ l++  D + + R aAa a++a++
  MMETSP0890-20130614|32797_1 764 LIPPALNAVADNDDDTRTAAALAVAAMM 791
                  79999******************99875 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.00083
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalae 29 
                  +l  ll+   +p ++ R+a+a  Lgal++
  MMETSP0890-20130614|32797_1 804 ILESLLQQTAHPKWRARCAVAAYLGALVS 832
                  4555666666*****************86 PP

  == domain 6    score: 8.2 bits;  conditional E-value: 0.00075
                  HHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   5 llkllnDpspeVReaAaeaLgala 28 
                  l +l+ D+s+eVR+a+  +L+ l+
  MMETSP0890-20130614|32797_1 850 LRTLCADKSAEVRDASRASLASLI 873
                  7799***********999998886 PP

  == domain 7    score: 1.0 bits;  conditional E-value: 0.16
                  SSHHHHHHHHHHHHH CS
   PF02985.17  12 pspeVReaAaeaLga 26 
                  +++++R  A++aLga
  MMETSP0890-20130614|32797_1 911 DTARIRLGAVQALGA 925
                  56799********97 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.7e-06     0.013      96     205 ..     765     873 ..     759     896 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.7e-06
    PF12348.3  96 lptLlkllgdtkkiisqnanqaladllenasftsrlelqvlsvalqdKNv...qpReysaiwLkillerhgsdkskleasglldliekslkkgleDanpeVReaaRatfweff 205
                  +p  l+ ++d+ + ++++a+ a+a+++    + +  +  +l+ +lq+  +   ++R  +a +L  l++rh+    +l++++ +dl+  +l+ +++D + eVR+a+Ra + ++ 
  MMETSP0890-20130614|32797_1 765 IPPALNAVADNDDDTRTAAALAVAAMMHTSRVDAYGVEPILESLLQQTAHpkwRARCAVAAYLGALVSRHA---LYLSSTQ-IDLAFGALRTLCADKSAEVRDASRASLASLI 873
                  56667889999999**************999888777888888888876544478999999**********...7887777.99**********************9987765 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         4   1.4e+04      34      45 ..      76      87 ..      67      89 .. 0.69
   2 ?    1.1   0.0      0.17   5.8e+02      26      51 ..     205     230 ..     190     231 .. 0.73
   3 ?   -2.6   0.1       2.5   8.6e+03       7      34 ..     690     714 ..     684     722 .. 0.53
   4 ?    7.0   0.7    0.0024       8.1      22      54 ..     761     789 ..     742     790 .. 0.75
   5 ?    2.2   0.9     0.077   2.6e+02       1      48 [.     817     865 ..     817     872 .. 0.83
   6 ?    7.9   0.1    0.0012       4.1       2      34 ..     914     946 ..     913     958 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4
    PF13513.1 34 lelLeddddeVR 45
                 +++L+d dd+ R
  MMETSP0890-20130614|32797_1 76 CAALNDQDDDQR 87
                 467888777655 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.17
    PF13513.1  26 vpellpaLlelLeddddeVReaAawA 51 
                     ll+  l lL++d  ++R+aA   
  MMETSP0890-20130614|32797_1 205 YATLLDHCLTLLSHDYGDIRGAASEL 230
                  44488888899988888*****9765 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.5
    PF13513.1   7 AawaLGrlaggeprllepavpellpaLl 34 
                    ++L++la   +  le  +   l +L 
  MMETSP0890-20130614|32797_1 690 IGQCLAALA---GGALELGLVINLHQLH 714
                  444454444...5555555555555555 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0024
    PF13513.1  22 lepavpellpaLlelLedddd.eVReaAawALgr 54 
                  ++ ++p +l a       d+d ++R+aAa+A ++
  MMETSP0890-20130614|32797_1 761 VACLIPPALNAVA-----DNDdDTRTAAALAVAA 789
                  4556667777777.....6666********9765 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.077
    PF13513.1   1 wrvRraAawaLGr.laggeprllepavpellpaLlelLeddddeVReaA 48 
                  wr R a+a+ LG+ +   +  l +++++ +  aL+ l +d+++eVR+a+
  MMETSP0890-20130614|32797_1 817 WRARCAVAAYLGAlVSRHALYLSSTQIDLAFGALRTLCADKSAEVRDAS 865
                  6777777777888766777777889**********9**********986 PP

  == domain 6    score: 7.9 bits;  conditional E-value: 0.0012
    PF13513.1   2 rvRraAawaLGr..laggeprllepavpellpaLl 34 
                  r+R +A++aLG+  +a   p +++p+vp +l +L+
  MMETSP0890-20130614|32797_1 914 RIRLGAVQALGAtvIA--FPYDVPPHVPRALVLLS 946
                  89**********6655..99999*******99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.38u 0.38s 00:00:01.75 Elapsed: 00:00:01.19
# Mc/sec: 2045.97
//
Query:       MMETSP0890-20130614|32805_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-12   46.1   0.0    3.8e-12   45.5   0.0    1.2  1  PF00176.18 SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.018   14.7   0.0    1.2  1  PF04851.10 Type III restriction enzyme, res subunit
      0.078   12.3   0.0       0.12   11.7   0.0    1.3  1  PF00270.24 DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> PF00176.18  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   8.2e-16   3.8e-12       1     119 [.      50     159 ..      50     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 8.2e-16
                  TTT---HHHHHHHT---...---B---------HHHHHHHH.HHHHHHS----EEEE--TTTHHHHHHHHHHH...STT--EEE-----HHHHHHHHHHS--------SEEEE-TTHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00176.18   1 yQkegvawllrreakklsvrggiLademGLGKTlqvialitaeLkemkdrrqptLvVvPssllqqWlneiekh...agalrvvvyhgqtrerskvaesmvsakqlatadvvittYdvlkkek 119
                  yQke+v++ ++r           L+de GLGKT+  + l+++++++      p+L+ +P+++  qW  e +k+   a + + +++ +++++ + v+ ++   + + +++v+i +Ydv ++++
  MMETSP0890-20130614|32805_1  50 YQKEAVRIGVERRGRL------WLCDEQGLGKTVSSLILMAQYVED-----WPLLILAPKAVRIQWFMEAKKWlalAFEHESTLWPNENKNIQLVTGKK-DCAVQPDTKVMIASYDVFANNE 159
                  9999999999999554......5******************99999.....7*********************97777777888888888887444444.4789999**********99665 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.9e-06     0.018       4     119 ..      47     152 ..      14     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.9e-06
   PF04851.10   4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar..kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiiltti 119
                  + +yQ+ea++  +e      ++ r+ +  + G GKT+ ++ l+a++ +    l+l+p k++  q+  e kk     +e e+  +++++k+     +q +  +k++  + d++++++++
  MMETSP0890-20130614|32805_1  47 ILEYQKEAVRIGVE------RRGRLWLCDEQGLGKTVSSLILMAQYVEdwPLLILAP-KAVRIQWFMEAKKWLALAFEHESTLWPNENKN-----IQLVTGKKDCAVQPDTKVMIASY 152
                  56777777777774......4567788889*******************99999998.68999999888777777777777777766665.....44444444444455555555555 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.6e-05      0.12       2      56 ..      49      97 ..      48     142 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHH.SS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEES CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24  2 piQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaP 56
                 ++Q+ea+++ + + g + ++ e G GKT   li + q + +          li+aP
  MMETSP0890-20130614|32805_1 49 EYQKEAVRIGVeRRGRLWLCDEQGLGKTVSSLILMAQYVED--W-----PLLILAP 97
                 589*****9995577899*******************9954..3.....5667666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.35s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 667.84
//
Query:       MMETSP0890-20130614|32809_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-22   79.0   0.0    6.5e-22   78.2   0.0    1.3  1  PF01936.13 NYN domain
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.22   11.2   0.0    1.7  1  PF12872.2  OST-HTH/LOTUS domain


Domain annotation for each model (and alignments):
>> PF01936.13  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   9.5e-26   6.5e-22      28     144 ..       3     115 ..       1     118 [. 0.92

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 9.5e-26
   PF01936.13  28 eirskgelvraraygnwedeeqnkfqdalsstgi.kvkhkplkkrggsgkkavDvelavdalelaydnkydtivLvsgDgDFaplveklrergkrVevllaeastsseLidaadefis 144
                  ++ + g +  ar+yg+w+++ +n++++ l +++i +v+ + ++    sgk ++D +l++da++l++  +y+ +vLvs+D+DF++l+ ++re g  V++++ +++ts ++ +a+++f +
  MMETSP0890-20130614|32809_1   3 FVNRFGTISAARIYGDWASTLLNGWRNRLFDYAIvPVQNFSYI----SGKSSSDASLIIDAMDLLHSGRYSVFVLVSSDSDFTRLATRIREDGNIVIGIG-RRQTSLAFVQACHTFQY 115
                  6777899**********************888888*******7....69********************************************9777777.69**********99976 PP

>> PF12872.2  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05      0.22       9      42 ..     149     181 ..     143     204 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
                  HHHHHHHHHTT-----BTTT---HHHHH-TT--T CS
    PF12872.2   9 llrellesssdddGwvslsslgslyrkkypdfdp 42 
                   + +++++ +dddGw+ ls +g++ rk +p+fd 
  MMETSP0890-20130614|32809_1 149 KINQIVDEFADDDGWAMLSIIGTEVRK-DPEFDL 181
                  578899999**************9875.567775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.62
# Mc/sec: 962.41
//
Query:       MMETSP0890-20130614|32819_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.7e-221  734.7   1.6   5.4e-221  734.5   1.1    1.0  1  PF00012.15 Hsp70 protein
    3.8e-10   38.7   0.0    1.8e-09   36.5   0.0    1.9  2  PF06723.8  MreB/Mbl protein
  ------ inclusion threshold ------
      0.037   12.3   0.0       0.15   10.3   0.0    1.8  2  PF00022.14 Actin


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  734.5   1.1  1.2e-224  5.4e-221       1     601 [.      37     655 ..      37     656 .. 0.95

  Alignments for each domain:
  == domain 1    score: 734.5 bits;  conditional E-value: 1.2e-224
                  EEXEEXXXXEEBXEEE..XXXXEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCTTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX.......EEEEXHHHHHHHHHHHHHHHHHHHHSS.XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX...........XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXTTCHHHCSSS....SXXXXXXECEEESS-E-EEEEE--EEEEESTTCESSEEEEEEEEESCCCESSEEEEEEES-GSSGGGSEEEEEEEEE---S-------EEEEEEE-----EEEEEEESE---EEEEEE-TT--.--HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHCHHHHHHHHH CS
   PF00012.15   1 viGiDLGttnsvvavm..eggkvevianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealg.....ekkkftpeeisamvLkklketaeaylgekvtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd..........kernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfeeLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaAvqaavlsge....eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelakdnkllgkfeltgippaprGvpqieVtfdidanGiltvsakdkstgkeekitieaseg.lsedeiekmvkeaeesaeedkkkkeaieakneleelvyslekkleeekekvseaekekkveeaieelkeelegedkeeieakleelekvvekivekly 601
                  ++GiDLGtt+s+v+v+  e ++v++i n+eg+rttPs+vaF ++ +r+vG++Ak+qa++n+k t +++krliGrk++dp+v ++ k++++ +v+ +++ka+++ +++g     +kk ++pee+sa++L+klk+ aea+lg+ vt+avitvPaYFndaqRqatkdAg+iAGL+vlRi+neptaaalaYG+ ++           + +n+lv+D+Gggtfdv +le+e GvfevkatagDthlGGedf +al++++++++ k+++     d +  +rL ++++kaK++LSs  + ++++e+++l + + d++ ++tRa fe+L+++ + r +++v ++lkdakl+ ++ide+vlvGGstRiP+v+e++++ f+ k+p+ s+n+DeavA+GaAvqaa+lsg+     + ++++llDv+pLslgiet+gg+mt+liernttip++++q+f+t adnq+ v+i+v++ger++++dn++lg+fel+gippaprG p+i V+fd+danGil+v+a d++tgk++ iti+a++g l++++ie++ ++a++++++dk++ + + ++nel++ +y ++++ ++   + +e+   ++ ++ +++l+e+  + + +++ ++++++e++v++ive+ y
  MMETSP0890-20130614|32819_1  37 AVGIDLGTTYSCVGVWnpERNNVDIIPNQEGQRTTPSYVAFVQDgQRIVGDTAKNQAARNAKGTAYDAKRLIGRKWNDPNVIEDAKQWSFAIVRGDKDKAMIQLQYNGagtktKKKIMHPEEVSAAILSKLKASAEAFLGRAVTKAVITVPAYFNDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGFGNSMnrdnahnnskSTQNILVYDMGGGTFDVTLLELEGGVFEVKATAGDTHLGGEDFTNALCDFCIKKLPKNKQ--HILDARQKRRLWQECDKAKRTLSS--APSTSIEVDALLAPDYDFNLSITRADFEKLCQPAFTRSMKSVDRVLKDAKLNRSQIDEIVLVGGSTRIPRVREMLQNEFNgKKPNASINADEAVAYGAAVQAAILSGQatksPSLQQVVLLDVAPLSLGIETAGGIMTRLIERNTTIPAHAEQIFTTHADNQPGVDIKVYEGERAFTRDNRELGTFELSGIPPAPRGIPRISVSFDVDANGILSVKASDNATGKSNAITITADNGrLNKSDIENLLRDAQAHSQADKEQLDLVTKRNELDSAAYAAKSTASQIGGANKETLI-NEADSLLSWLQEN-PDASLSDLDSRRQQFEAIVHPIVETFY 655
                  59**************44467899********************9************************************************************9864444467889**********************************************************************988777889999998899***************************************************987743..445566679***************..677778888999999*************************************************************99988**************************9766557899****************************************************************************************************************************************************************999999887777777.99***********.58889*****************99876 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.095   4.3e+02       3      17 ..      37      51 ..      35      98 .. 0.65
   2 !   36.5   0.0   3.9e-13   1.8e-09      92     316 ..     178     422 ..     150     430 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.095
                 EE--B----EEEE-- CS
    PF06723.8  3 dlgiDLGtantlvyv 17
                  +giDLGt+   v v
  MMETSP0890-20130614|32819_1 37 AVGIDLGTTYSCVGV 51
                 589*****9988744 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 3.9e-13
                  S--EEEE-------HHHHHHHHH--------EEEE--HHHHHH-....----.......-TTS----EEEE-----EEEEEE----EE.....EEEEES----HHHHHHHHHHH....HHHSB----HHHHHHHHH----S--HHHH.-EEE---BT.T------EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-----.EE-SSTTTTTT---- CS
    PF06723.8  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAi....Gagl.......pveepsgnmvvdiGggttevavislggiv.....tsksvrvaGdeldeaiikyir....kkynlliGertaekikieigsavkeeeee.kmeikGrdl.vtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpv.kvaedpltcvakGtg 316
                  + ++ vi+vP   ++ +r+A k+a + aG +   +i+ep aAA+    G  +       + + ++  +v d+Gggt +v+++ l g v     t+   +++G+++ +a+ ++      k+ + ++  r+ +++ +e  +a+ + ++  +++i+   l +     +++++ ++ ++  + ++++ +++v +vL++++  L    +d+ ivl+GG++ +  ++++l++e++ +  + + ++ ++va G++
  MMETSP0890-20130614|32819_1 178 AVTKAVITVPAYFNDAQRQATKDAGTIAGLEVLRIINEPTAAALaygfGNSMnrdnahnNSKSTQNILVYDMGGGTFDVTLLELEGGVfevkaTAGDTHLGGEDFTNALCDFCIkklpKNKQHILDARQKRRLWQECDKAKRTLSSApSTSIEVDALlAPDYDFNLSITRADFEKLCQPAFTRSMKSVDRVLKDAK--LNRSQIDE-IVLVGGSTRIPRVREMLQNEFNGKKpNASINADEAVAYGAA 422
                  55789*************************************9844223333111111122334455899*************98766222112334689*******99887430111456788999999********999988877778887666515678899***************************9875..66666665.9999****************986651455688888888876 PP

>> PF00022.14  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.11   4.8e+02     142     189 ..     242     292 ..     210     331 .. 0.72
   2 ?   10.3   0.0   3.3e-05      0.15     303     357 ..     371     421 ..     337     437 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.11
   PF00022.14 142 atglvvDsGasvtsvvpv.leG..lvLkkairrldlgGkalteqlkellss 189
                  ++ lv D+G ++  v+   leG  + +k      +lgG++ t+ l+    +
  MMETSP0890-20130614|32819_1 242 QNILVYDMGGGTFDVTLLeLEGgvFEVKATAGDTHLGGEDFTNALCDFCIK 292
                  377888888888888776456633456677788999999999999776555 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.3e-05
   PF00022.14 303 dvdlrkeLlanivvtGGtsllpglteRlekelaqlapsgvkvkiiapeaerkysa 357
                  d++l ++ + +iv++GG++ +p+++e l++e +    ++ ++ i a+e    y+a
  MMETSP0890-20130614|32819_1 371 DAKLNRSQIDEIVLVGGSTRIPRVREMLQNEFNG---KKPNASINADE-AVAYGA 421
                  6778888999*********************998...44445555555.445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.39s 00:00:01.45 Elapsed: 00:00:00.97
# Mc/sec: 1694.74
//
Query:       MMETSP0890-20130614|32829_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-38  131.5   0.0    3.6e-38  131.1   0.0    1.2  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
    8.5e-06   26.1   0.1    1.2e-05   25.6   0.1    1.3  1  PF04969.11 CS domain


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.0   5.2e-42   3.6e-38       2     139 ..      97     235 ..      96     242 .] 0.84

  Alignments for each domain:
  == domain 1    score: 131.1 bits;  conditional E-value: 5.2e-42
   PF00160.16   2 vdietss..kGrivieLfedkaPktvenFlklakeg..fYdgtkfhrvikgfmiqgGdpsgkgangeekkaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekiea.ve 139
                  +die  +  +Gri++ Lf+++ P tv+nF  l++++   Y++++fhr+i++fm+qgGd+++ + +g +    g+s++dE   +  +h  +G+l+ma+ g  pns++sqFfIt+++ap+lD+k++vFG+   g d+++++e+ ++
  MMETSP0890-20130614|32829_1  97 FDIEAAGerLGRIELGLFGKQLPLTVANFKALCTDHspNYKNSPFHRIIPKFMAQGGDITKGDGSGGT-SIYGDSFDDEA--FIFRHsAPGVLSMANAG--PNSQSSQFFITYEAAPWLDNKHVVFGRLLAGEDILNAMESrGS 235
                  5666655678************************6666********************8887653222.33444799**9..45566588******998..7*************************************97343 PP

>> PF04969.11  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.8e-09   1.2e-05      16      71 ..       2      58 ..       1      67 [. 0.78

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.8e-09
                 EE-------S-EEEEE.----EEEEE---....EEE---BSS-EEEEEEEEEE---....E CS
   PF04969.11 16 ipvkgvikkedvkvei.kkkslkvsikgpgekeyllegeLfgeIdpeesswkiedt....k 71
                 i+v  ++ ++dv+v   +++++ v++++    e++leg+L+g+Id ees w +e+     +
  MMETSP0890-20130614|32829_1  2 IYVTSETLAKDVHVIYpTTRKVCVKVQD----EVILEGDLCGKIDREESFWILEPAedetQ 58
                 7788888899999985156667777766....8********************99755553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       189  (0.0138239); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 935.35
//
Query:       MMETSP0890-20130614|32828_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-26   93.0   2.3    2.3e-24   85.9   1.6    2.3  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      2e-06   27.6   0.0    7.2e-06   25.9   0.0    1.9  1  PF07724.9  AAA domain (Cdc48 subfamily)
      1e-05   25.5   0.4    3.2e-05   23.9   0.0    2.0  2  PF13401.1  AAA domain
    0.00011   21.1   0.0    0.00019   20.3   0.0    1.3  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
    0.00026   20.6   0.2     0.0031   17.1   0.2    2.7  1  PF07728.9  AAA domain (dynein-related subfamily)
    0.00053   20.1   0.2     0.0016   18.6   0.0    1.9  2  PF13238.1  AAA domain
    0.00085   18.3   0.0     0.0029   16.6   0.0    1.8  1  PF06745.8  KaiC
    0.00087   18.6   0.8     0.0026   17.0   0.6    1.8  1  PF13481.1  AAA domain
     0.0012   19.5   0.3     0.0032   18.1   0.0    1.9  1  PF13207.1  AAA domain
     0.0022   17.5   0.3     0.0096   15.4   0.2    2.0  1  PF13604.1  AAA domain
     0.0025   17.5   0.0      0.013   15.2   0.0    2.3  1  PF13671.1  AAA domain
     0.0035   17.3   0.0     0.0076   16.3   0.0    1.6  1  PF00910.17 RNA helicase
     0.0059   16.3   1.2       0.12   12.1   0.1    2.7  2  PF04851.10 Type III restriction enzyme, res subunit
      0.007   15.1   0.0      0.015   14.0   0.0    1.5  1  PF01057.12 Parvovirus non-structural protein NS1
  ------ inclusion threshold ------
      0.021   14.3   0.0      0.055   12.9   0.0    1.7  1  PF05729.7  NACHT domain
      0.023   14.9   1.3      0.058   13.6   0.4    2.1  1  PF13191.1  AAA ATPase domain
      0.031   14.1   0.5      0.078   12.8   0.0    2.0  2  PF13521.1  AAA domain
      0.032   13.3   0.0      0.084   11.9   0.0    1.8  1  PF08433.5  Chromatin associated protein KTI12
      0.036   13.1   0.0      0.074   12.0   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
      0.059   12.7   1.2       0.27   10.5   0.8    2.0  1  PF00270.24 DEAD/DEAH box helicase
      0.079   12.4   0.0       0.88    9.0   0.0    2.3  2  PF07726.6  ATPase family associated with various cellular activities (AAA)
       0.13   12.0   0.1       0.75    9.5   0.1    2.2  1  PF13173.1  AAA domain
       0.17   11.5   4.7       0.21   11.2   0.1    3.2  4  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   1.6   3.9e-27   2.3e-24       1     130 [.     133     302 ..     133     304 .. 0.83

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 3.9e-27
                  EEEE-------HHHHHHHHHHCT..HEEEEEECCSSSSST-HHHHHHHHHHHHH.H........HHTS.......................-SEEEEEETGGGC-HHH....SS..TTHCHHHHHHHHHHHHHTTTT...S.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
   PF00004.24   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelfke.a........keka.......................kpsilfiDEidalaksr....sgseseeeervvnqLlteldgvkkk...eskvivigatnrpdkldpallr.gRfdrkiei 130
                  v+++G+pG+GKTlla+++ak l+   e   + +++ll+ky+g se++ir+ f   a        k  +                       +  ++++DEida+a sr     +++++ ++++vnqLl+ l g +++   +++++v+++tnr d +d+allr gRf+++i++
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDssGEPTIVAAPQLLDKYLGGSEANIRKAFFGsAiedddtqdK--EnrlmhalkndkeratnkqkhdkrQIRCVVVDEIDAIAASRstdqATGTDRARDSIVNQLLSILCGTTSDdddDDTFLVLATTNRLDLIDEALLRpGRFEIQIQV 302
                  689******************953377999*********88888888888775524565555541..044555666666666888889986669**************99766668899999*************99999888**************************997 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.2e-08   7.2e-06       5     120 ..     132     273 ..     128     285 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.2e-08
                  -EEEE-------HHHHHHHHHHTT-......................--EEEEGGG-------THHHHHHHHHTTT-HHHHT--.........-EEEETGGG----....------------HHHHHHHH---EE-------EE-TT CS
    PF07724.9   5 silllgptgvGktelakalaellfv..................kkekkliradaselleeeevehlvsrligappgyvgaeegG.........ivllDEidKihpk....essgadvSregVqrdLLqileggtltdkqgrkvdtkn 120
                   +++ g+ g+Gkt+la ++a+ l+                   ++e ++  a   + +e+++ +   +rl++a + +++++ +           v +DEid i+++    +  g d  r+ +++ LL il g+t  d ++     + 
  MMETSP0890-20130614|32828_1 132 GVIFWGTPGCGKTLLASQIAKALDSsgeptivaapqlldkylgGSEANIRKAFFGSAIEDDDTQDKENRLMHALKNDKERATNKqkhdkrqirCVVVDEIDAIAASrstdQATGTDRARDSIVNQLLSILCGTTSDDDDD-----DT 273
                  57899*******************888888888888888888744444444444444443333333333333333333333333444566688899********9989989999******************99888877.....33 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.6   3.3e+03      88     107 ..      78     107 ..      11     116 .. 0.60
   2 !   23.9   0.0   5.4e-08   3.2e-05       7     123 ..     133     279 ..     130     286 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 5.6
    PF13401.1  88 t......rlliiDEaqrL..s..eealeel 107
                  +      +++ +D+ + L     +++leel
  MMETSP0890-20130614|32828_1  78 QedllpaEMIRLDDGEALgvAglDDVLEEL 107
                  133345556677777777441447777776 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 5.4e-08
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvv....fveapastspkellqkllsalglpakgrltteellealqealrrrrt.........rlliiDEaqrL.......s........eealeelrsl.....ldd.etgvklvlvG 123
                  +++ G +G+GKT+l+ ++a+ ld       ++++v    + +   ++s  ++++++++   ++ +  +++++l+ al +  +r+           r++++DE++ +       +        ++ +++l s+     +dd + ++ lvl+ 
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDSSG----EPTIVaapqLLDKYLGGSEANIRKAFFGSAIEDDDTQDKENRLMHALKNDKERATNkqkhdkrqiRCVVVDEIDAIaasrstdQatgtdrarDSIVNQLLSIlcgttSDDdDDDTFLVLAT 279
                  6889*****************98664....44444555555556666888999999999998888866666666444333333333466799999**********9776654404444455555555554443333333345555555555 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.3e-07   0.00019       7      97 ..     136     236 ..     131     262 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.3e-07
    PF09848.4   7 tGvaGtGKtvvalnllael.......edseeertavflsgNhplvk..vlrealakklekkkkkeavkkpssfinnls.kaekkkpkedvvivDEAhrllt 97 
                   G +G GKt++a++++++l          + +  +++l g+++ +    + +a++ +++++k +++++ ++   ++++ k++++k+++++v+vDE   +  
  MMETSP0890-20130614|32828_1 136 WGTPGCGKTLLASQIAKALdssgeptIVAAPQLLDKYLGGSEANIRkaFFGSAIEDDDTQDKENRLMHALKNDKERATnKQKHDKRQIRCVVVDEIDAIAA 236
                  59*****************55444443334888899998888877622456777777766666666666665555555778999***********555544 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   5.2e-06    0.0031       2      31 ..     133     164 ..     132     293 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5.2e-06
                  EEEE------HHHHHHHGGGGB..S--EEEEE CS
    PF07728.9   2 vlLvGppGtgKselaerlaeal..nreveyvq 31 
                  v+  G pG+gK+ la ++a+al    e ++v+
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALdsSGEPTIVA 164
                  8999******************7744444444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       4.6   2.8e+03      28      66 ..      50      79 ..      38     107 .. 0.60
   2 !   18.6   0.0   2.7e-06    0.0016       1      87 [.     133     237 ..     133     280 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.6
    PF13238.1 28 dlakengleeevddkidtkeskeldedkldelldkleen 66
                 +l+ e++ ++e         + e+ +  ++e +d++++ 
  MMETSP0890-20130614|32828_1 50 ELWLEKYSMKE---------NAEEPTSLQKEEIDQFKQE 79
                 33334444444.........4444444444444444443 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.7e-06
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl......................gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaelel 87 
                  +++ GtpG+GKt la  +a+ l                        ++r+ ++ + +e++++++++++  + l+ dk      + +++  + ++ + v++d + a+  +
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALdssgeptivaapqlldkylggsEANIRKAFFGSAIEDDDTQDKENRLMHALKNDK---ERATNKQKH-DKRQIRCVVVDEIDAIAAS 237
                  5778*****************99999999***************9*****************994444444444444...222222222.2355666688877777665 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.9e-06    0.0029       4     128 ..      96     236 ..      94     264 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.9e-06
    PF06745.8   4 gIeglDellk...................gGipegrvvlitGepGtGKtifalqFlikgaeeygepgvfvtveesaedlrenakslgwdlekleeegklaiidasesaeeea...eedleelieklaeaikeikakrvviDsitgl.y 128
                  g+ glD++l+                    G+   r v   G+pG+GKt++a q + k + + gep++  +    ++ l +     + +++k       ai d  ++++e+      + ++  ++ ++  ++ ++++vv+D i+++  
  MMETSP0890-20130614|32828_1  96 GVAGLDDVLEeleirlrlplaaplsllreLGVKPVRGVIFWGTPGCGKTLLASQ-IAKALDSSGEPTIVAA----PQLLDKYLGGSEANIRKAFFG--SAIEDDDTQDKENRlmhALKNDKERATNKQKHDKRQIRCVVVDEIDAIaA 236
                  7888888887788888888888888888888888999999**************.55667888***98654....666777777777777776665..45555555555533323112222222222333334447777777777752 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   4.3e-06    0.0026      36     163 ..     133     243 ..     102     261 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.3e-06
    PF13481.1  36 tllaGapgtGKStlalqlaaava.tGepflgpvvpepgrVlylsaEdseaelrrrlsail..aalddpenlllvslagvgslrltaddrrdalltadlerllaaieelegpdlvviDtlsrlvggdensns 163
                  ++++G pg+GK+ la q+a a+  +Gep     +  ++   yl   +sea +r+ +   +   + ++++ ++l++            ++     + + ++  + +++ ++++ vv+D +++++++ + +++
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDsSGEPTIV--AAPQLLDKYL--GGSEANIRKAFFGSAieDDDTQDKENRLMHA----------LKN-----DKERATNKQKHDK-RQIRCVVVDEIDAIAASRSTDQA 243
                  699*******************988887633..2334444555..6788888888875553222233344444442..........122.....3334445566777.67999999988888888555544 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.4e-06    0.0032       6      77 ..     137     225 ..     133     299 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.4e-06
                  --TT---HHHHHHHHHHST.........EE.....EEEGGG..B--GGGS-.B-----B--SSGGGB-HHHHHHHH........H..HHHHHH CS
    PF13207.1   6 GppGsGKsTlakeLaerlg.........lp.....vlsldd..llreeglk.elddgereskdadadllaaildglaa....kkdtlswvidg 77 
                  G+pG+GK+ la ++a++l+          p     +l  ++  + r+  +   ++d++    +  +++l   l+++++    k++++   i +
  MMETSP0890-20130614|32828_1 137 GTPGCGKTLLASQIAKALDssgeptivaAPqlldkYLGGSEanI-RKAFFGsAIEDDD---TQDKENRLMHALKNDKEratnKQKHDKRQIRC 225
                  *****************964444443332222222444444322.2222222444333...34455555555555544445544444444444 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   1.6e-05    0.0096      19     101 ..     131     230 ..     120     249 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
    PF13604.1  19 rvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeee.................lgiearTiasllerldkeeaegrkeldakt..llvvDE 101
                  r ++  G +G GKt + +++++al+++g + +++Ap+      L+ +                 ++ + + +++ l+  ++++++ ++++d+++   +vvDE
  MMETSP0890-20130614|32828_1 131 RGVIFWGTPGCGKTLLASQIAKALDSSGEPTIVAAPQLLDK-YLGGSeanirkaffgsaiedddTQDKENRLMHALKNDKERATN-KQKHDKRQirCVVVDE 230
                  456667******************************85433.2333333444445554444444334444444444333332222.2224444455777777 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-05     0.013       2      46 ..     133     196 ..     133     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.2e-05
    PF13671.1   2 vllvGlpGsGKstlaerllkklg....yvrlsqdt............lrkrlfg...tdqqskt 46 
                  v++ G pG+GK+ la +++k+l+     +++ ++             +rk+ fg   +d +++ 
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDssgePTIVAAPQlldkylggseanIRKAFFGsaiEDDDTQD 196
                  799*******************988887788888867777777777766666665553222222 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-05    0.0076       1      80 [.     133     208 ..     133     228 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-05
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt.gqevvvidDfgqvkdee.nps.dlaelirlvsst 80 
                  ++++G +g+GK++la ++akal ++     +++++   ++ + +d+Y  g e+++   f  +  e  + +  ++ l+ + ++ 
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDSS----GEPTIV---AAPQLLDKYLgGSEANIRKAFFGSAIEDdDTQdKENRLMHALKND 208
                  689**************88888733....334454...366666666666666666666555522223333555555555555 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.9   2.3e+03     111     129 ..      33      51 ..       4      91 .. 0.56
   2 !   12.1   0.1   0.00019      0.12      25      70 ..     130     176 ..      98     289 .. 0.62

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.9
   PF04851.10 111 dkeiilttiqklhkaleee 129
                     i l++i ++++a+ee 
  MMETSP0890-20130614|32828_1  33 LGAIGLAQINSVNEAVEEL 51 
                  4555666666666665543 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00019
   PF04851.10  25 kkrglivmaTGtGKTlvaasliarlar...kflflvprkelleqaleef 70 
                   + ++++ + G+GKTl+a +++++l +    +++ +p+  ll++ l   
  MMETSP0890-20130614|32828_1 130 VRGVIFWGTPGCGKTLLASQIAKALDSsgePTIVAAPQ--LLDKYLGGS 176
                  567899**************888888898777776663..445544333 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.5e-05     0.015     117     140 ..     133     156 ..     127     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
   PF01057.12 117 vwfyGpantGktnlaeaIakavpl 140
                  v f+G++ +Gkt la++Iaka+++
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDS 156
                  78*******************986 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.3e-05     0.055       3      28 ..     133     158 ..     131     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.3e-05
    PF05729.7   3 vilqGeaGsGKTtLlqklasawakgk 28 
                  vi  G +G+GKT L+ ++a+a+ ++ 
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDSSG 158
                  7888****************998876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   9.8e-05     0.058      25      58 ..     132     160 ..     110     246 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.8e-05
    PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagk 58 
                   +++ G +G+GK+ L+ +     ++++l   ++ 
  MMETSP0890-20130614|32828_1 132 GVIFWGTPGCGKTLLASQ-----IAKALDSSGEP 160
                  7999**************.....55554444443 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       9.2   5.5e+03      23      45 ..      40      62 ..      31      80 .. 0.59
   2 ?   12.8   0.0   0.00013     0.078       2      23 ..     133     158 ..     132     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 9.2
    PF13521.1 23 gypvvpEvarevleeklakgeea 45
                 +++ v E++ e++ ek+  +e+a
  MMETSP0890-20130614|32828_1 40 QINSVNEAVEELWLEKYSMKENA 62
                 55667888888888888544432 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00013
    PF13521.1   2 ivitGgpstGKTtlleaLaar....g 23 
                  +++ G+p++GKT l++++a+     g
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKAldssG 158
                  7899************9996545554 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014     0.084       4      35 ..     133     164 ..     131     238 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
    PF08433.5   4 vvltGlPssGKstvakeLakaleeegrsvvvi 35 
                  v++ G P  GK+ +a ++akal ++g   +v 
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDSSGEPTIVA 164
                  89*********************977766654 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012     0.074      25      46 ..     133     154 ..     124     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
   PF01078.16  25 lllvGppGsGKtmlakrlpsll 46 
                  +++ G+pG+GKt+la+++++ l
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKAL 154
                  799*************998876 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.8   0.00045      0.27     101     146 ..     200     245 ..     121     280 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00045
                  SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24 101 divvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnq 146
                  +++ +  +     ++++k +  q+r++V+DE+d +      dq + 
  MMETSP0890-20130614|32828_1 200 RLMHALKNDKERATNKQKHDKRQIRCVVVDEIDAIAASRSTDQATG 245
                  33444444444444555667789************99555553333 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0015      0.88       2      37 ..     133     169 ..     132     183 .. 0.76
   2 ?    0.4   0.0       0.7   4.2e+02     101     114 ..     271     284 ..     259     290 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0015
    PF07726.6   2 vllegvPGlaktllvkalakaldlefk.riqftpdll 37 
                  v++ g+PG +ktll++++akald + +  i  +p ll
  MMETSP0890-20130614|32828_1 133 VIFWGTPGCGKTLLASQIAKALDSSGEpTIVAAPQLL 169
                  567799****************987542455555555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.7
    PF07726.6 101 pepflvlatqnpie 114
                  +++flvlat n ++
  MMETSP0890-20130614|32828_1 271 DDTFLVLATTNRLD 284
                  679********876 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0013      0.75       6      73 ..     134     234 ..     131     304 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0013
    PF13173.1   6 vitGpRrvGKttllkqlakell........................keesilyinlddeelrkladpellelfleklke...........kkkylflDEiqev 73 
                  +  G  ++GKt l+ q+ak l                          ++ ++  + +d++++ +++  l++++ + + e           +  +++ DEi  +
  MMETSP0890-20130614|32828_1 134 IFWGTPGCGKTLLASQIAKALDssgeptivaapqlldkylggseanIRKAFFGSAIEDDDTQDKENR-LMHALKNDK-EratnkqkhdkrQIRCVVVDEIDAI 234
                  667999************9988876666666555555555554432222222222333222222222.222222221.1122233344334445777777666 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00035      0.21      17      51 ..     137     167 ..     127     168 .. 0.80
   2 ?   -0.5   0.0       1.5   9.1e+02      49      63 ..     244     265 ..     224     283 .. 0.54
   3 ?   -1.7   0.3       3.8   2.2e+03      22      22 ..     345     345 ..     326     359 .. 0.49
   4 ?   -1.0   0.1       2.2   1.3e+03      22      36 ..     345     359 ..     341     383 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00035
    PF13245.1  17 GgPGtGKTttlaaiiaallaarekp.grsvllvapt 51 
                  G PG GKT +la  ia +l+      g+   ++ap+
  MMETSP0890-20130614|32828_1 137 GTPGCGKT-LLASQIAKALD----SsGEPTIVAAPQ 167
                  99******.99999999993....336668888885 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.5
    PF13245.1  49 aptgraakrlserl.......l 63 
                  ++t+ra + + + l        
  MMETSP0890-20130614|32828_1 244 TGTDRARDSIVNQLlsilcgtT 265
                  5555555555444434333221 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3.8
    PF13245.1  22 G 22 
                  G
  MMETSP0890-20130614|32828_1 345 G 345
                  3 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 2.2
    PF13245.1  22 GKTttlaaiiaalla 36 
                  G T + +a+i++l+a
  MMETSP0890-20130614|32828_1 345 GTTGASIAAIVRLAA 359
                  889999999999983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      475  (0.0347425); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.93u 0.37s 00:00:01.30 Elapsed: 00:00:00.77
# Mc/sec: 1219.96
//
Query:       MMETSP0890-20130614|32836_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-59  199.4   7.6    6.1e-59  199.4   5.3    2.2  2  PF05179.9  RNA pol II accessory factor, Cdc73 family
  ------ inclusion threshold ------
        1.3    8.7   9.0        4.1    7.0   2.9    2.3  2  PF02932.11 Neurotransmitter-gated ion-channel transmembrane region


Domain annotation for each model (and alignments):
>> PF05179.9  RNA pol II accessory factor, Cdc73 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4   5.3   8.9e-63   6.1e-59      15     272 ..      65     317 ..      55     318 .. 0.72
   2 ?    0.3   3.0     0.046   3.1e+02      19      60 ..     326     367 ..     316     379 .. 0.78

  Alignments for each domain:
  == domain 1    score: 199.4 bits;  conditional E-value: 8.9e-63
    PF05179.9  15 ekdiiaslqsakareekrekkqvveet.kkaeeervaaeskqeeakynrydqerfkaeeteglkidtlgs.lrgsklksvkegp....katasaraakangpskktsrdP.IIlipsaasslitllNvkdlLqelkyvpvdakkkkgskkeeevaiqrkksrskegtvryrvvdnpeklkpddWdRVvavFvtGkaWQFkdwkweepvdiFskikafhlkfeedkldknvkqWnVekielsknkRhkDravvsklWetlekfvrk 272
                  +kd++++ +++ ++ ek++++q  +++   +eee          ++ +  d e ++++ +++  +++ ++  + ++++++++ p    k   + r++ a+   k  +rdP II++psa++s++tllN+ d++ ++k++p+d+kk+ g k+e+ + i++++s       +yr++dnp kl+p++ dR+vavF +G++WQFk+w+ +epv++F+++ + hl+f+++ ++ n+ qWnV++++lsk+kRh D   v+ +W +le +++k
  MMETSP0890-20130614|32836_1  65 RKDLVQKERQIEKSLEKEAQEQNHQNSiPNNEEEI---------VQATTKDVELIEKNSEKNTSQNKRSAnEQDNTFSEIHAPPekiqKIEDKIRSSSAK-DLKSVKRDPyIIIVPSATTSVLTLLNAADFMMDGKFIPTDEKKAAGIKRETSIIIEKQRSDG--LMQPYRIIDNPIKLSPKEFDRIVAVFAMGPTWQFKGWRISEPVELFQRVLGIHLQFDDELTPTNITQWNVRILKLSKTKRHLDASLVLDFWRSLEDHIQK 317
                  34444444444444444444443332202222222.........22222222222221111111111111012223333333333332333344444444.668999***8899*********************************************9988..4689*******************************************************************************************99986 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.046
    PF05179.9  19 iaslqsakareekrekkqvveetkkaeeervaaeskqeeaky 60 
                   ++++s++ ++++r+++q +++ +k++++++++++++ +ak 
  MMETSP0890-20130614|32836_1 326 KKISHSSSVQKHHRSHHQSIASAEKKKRAHQRTHHPSSSAKA 367
                  467888999999999999999999999999999999865554 PP

>> PF02932.11  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.9    0.0006       4.1     108     203 ..      68     155 ..      55     181 .. 0.54
   2 ?    4.3   0.1    0.0042        29     149     188 ..     321     360 ..     194     379 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0006
                  -------------------------------------....-------.------------------------------------------------ CS
   PF02932.11 108 lfmkrpstakqnqakknesakksanssrleselgkepkksqvkvkvke.gsgaetstsekksasskgeseaelspelkkavegvsyiaqhlraeded 203
                  l++k+ + +k+ +++ +e+       ++++s +++e+++  v+ + k+ +  +++s++++++++++ +++ +  +e+  + e+++ i++++r+ +++
  MMETSP0890-20130614|32836_1  68 LVQKERQIEKSLEKEAQEQ-------NHQNSIPNNEEEI--VQATTKDvELIEKNSEKNTSQNKRSANEQDNTFSEIHAPPEKIQKIEDKIRSSSAK 155
                  2223333333222222222.......2222233333332..33333330333344444455555556666777888999999999999999988776 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0042
                  ---------------------------------------- CS
   PF02932.11 149 vkvkvkegsgaetstsekksasskgeseaelspelkkave 188
                   + + k+ s+ ++ +++ +s++++ +s  +++ + +++ +
  MMETSP0890-20130614|32836_1 321 KHATTKKISHSSSVQKHHRSHHQSIASAEKKKRAHQRTHH 360
                  1222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1865  (0.13641); expected 273.4 (0.02)
Passed bias filter:                      407  (0.0297689); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:00.91
# Mc/sec: 1003.31
//
Query:       MMETSP0890-20130614|32838_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-13   50.2   0.2      7e-13   48.3   0.0    1.9  2  PF07889.7  Protein of unknown function (DUF1664)
    0.00016   20.6   0.1    0.00017   20.5   0.1    1.1  1  PF03915.8  Actin interacting protein 3
    0.00086   18.4   1.0     0.0016   17.5   0.7    1.4  1  PF05384.6  Sensor protein DegS
     0.0068   16.1   1.0     0.0068   16.1   0.7    2.4  3  PF06009.7  Laminin Domain II
     0.0075   16.3   0.1      0.015   15.3   0.0    1.5  1  PF00601.14 Influenza non-structural protein (NS2)
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.023   14.4   0.1    1.5  1  PF04043.10 Plant invertase/pectin methylesterase inhibitor
      0.012   14.3   0.1      0.018   13.7   0.0    1.2  1  PF04108.7  Autophagy protein Apg17
      0.012   15.0   1.7      0.012   15.0   1.2    1.4  2  PF08376.5  Nitrate and nitrite sensing
      0.019   14.3   0.3      0.028   13.7   0.2    1.3  1  PF00038.16 Intermediate filament protein
      0.024   13.0   0.1      0.025   12.9   0.1    1.2  1  PF05667.6  Protein of unknown function (DUF812)
      0.025   14.5   0.1      0.055   13.4   0.1    1.5  1  PF08702.5  Fibrinogen alpha/beta chain family
      0.028   12.9   0.1      0.038   12.5   0.1    1.1  1  PF08317.6  Spc7 kinetochore protein
      0.029   14.0   0.5      0.047   13.3   0.3    1.4  1  PF07321.7  Type III secretion protein YscO
      0.042   13.0   1.1      0.094   11.9   0.8    1.6  1  PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
      0.057   12.9   0.0      0.097   12.2   0.0    1.4  1  PF03962.10 Mnd1 family
      0.061   13.0   0.2       0.21   11.3   0.0    1.9  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
      0.064   12.0   1.0      0.097   11.4   0.7    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
      0.069   12.6   1.5       0.07   12.6   0.2    1.6  2  PF04156.9  IncA protein
      0.087   11.6   0.5        1.3    7.7   0.1    2.0  2  PF04849.8  HAP1 N-terminal conserved region
       0.09   12.8   0.9       0.14   12.1   0.1    1.7  1  PF00804.20 Syntaxin
       0.12   11.8   0.1       0.25   10.8   0.0    1.6  1  PF08651.5  DASH complex subunit Duo1
       0.12   12.1   1.1       0.31   10.8   0.8    1.8  1  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
        0.2   11.9   2.3        0.3   11.3   0.5    2.2  1  PF07730.8  Histidine kinase
       0.31   10.6   1.8       0.53    9.9   0.4    1.8  2  PF07926.7  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.4   1.4e+03     107     125 ..      42      60 ..      33      64 .. 0.63
   2 !   48.3   0.0   1.2e-15     7e-13       6     126 .]      80     192 ..      75     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.4
    PF07889.7 107 slkqvvegLeskleslesk 125
                  +l +v+++L +kl+ l ++
  MMETSP0890-20130614|32838_1  42 QLSRVLSQLGKKLDGLGQQ 60 
                  3555666666666666555 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 1.2e-15
    PF07889.7   6 kslivpavvvgalgYgYvw.wKGlslsdlmfvtkrnladAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvvegLesklesleskQ 126
                  ++ i+  ++ ++l   Y++ wKG+++ d    t+ +l d v++ +  ++++ +a+asa+  +++ri+++ +++        +i+ee+ ++++d++++k+dv++ + + e+ + +l + ++kQ
  MMETSP0890-20130614|32838_1  80 NTSII--ATCAILCVIYLRfWKGVRFEDWQPLTRGSLRDVVKKFGDSMDTMRSALASARAAMAERIEKIKESI-------ARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQ 192
                  45555..45555666677659*******************************************999876655.......567778888888888888888888888888888888777777 PP

>> PF03915.8  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.1e-07   0.00017     151     218 ..     122     191 ..      38     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.1e-07
    PF03915.8 151 kkelkslkreLavlrqlkseskseikesissllekikklke..aslkaskssnrayvekskkklseesdk 218
                   + +  ++  La+ r   +e  ++ikesi++++e+i+k+++    +k+  ++ ra+ e++  +l e s+k
  MMETSP0890-20130614|32838_1 122 GDSMDTMRSALASARAAMAERIEKIKESIARIREEISKVHDdvRDVKTDVDATRALAESCDRRLVETSQK 191
                  567999**********************************966667777999************999975 PP

>> PF05384.6  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.7   2.8e-06    0.0016       7      79 ..     128     199 ..     123     203 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.8e-06
    PF05384.6   7 tietveeskeeifeiaEkarkeyerlkkeleevkekvsevikevdklekkerkarkrLaeVSreFekyseeei 79 
                  + ++++++++ + e  Ek++++++r+++e+ +v+  v +v ++vd +   +  + +rL+e S++ ++y+++ i
  MMETSP0890-20130614|32838_1 128 MRSALASARAAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQK-QDYANHGI 199
                  5567888899999999**********************************************87.45665555 PP

>> PF06009.7  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.4   3.7e+03      59      75 ..      38      54 ..      30      63 .. 0.50
   2 !    8.0   0.7    0.0038       2.2      86     111 ..     134     160 ..     111     161 .. 0.75
   3 !   16.1   0.7   1.2e-05    0.0068       2      56 ..     147     201 ..     146     229 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 6.4
                 XXXXXXXXXXXXXXXXX CS
    PF06009.7 59 rsvrkleklapqlldkL 75
                 +s  +l   + ql +kL
  MMETSP0890-20130614|32838_1 38 NSDAQLSRVLSQLGKKL 54
                 33334444444444444 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0038
                  .....XXXXXXXXXXXXXXXXX----- CS
    PF06009.7  86 qsrv.lsrniseikelIaqARkaAnkI 111
                  ++r+ +++ i++ike Ia+ R+  +k+
  MMETSP0890-20130614|32838_1 134 SARAaMAERIEKIKESIARIREEISKV 160
                  3455699***********999987776 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF06009.7   2 kelakeAnetakeVlkelegistnventkaklsklngsveetnekvksankavrd 56 
                  ke ++ + e  ++V +++ +++t+v++t+a +++ ++ + et +k   an +++ 
  MMETSP0890-20130614|32838_1 147 KESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQDYANHGIQA 201
                  8999*****************************************9999999985 PP

>> PF00601.14  Influenza non-structural protein (NS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-05     0.015      13      64 ..     109     161 ..     101     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.7e-05
   PF00601.14  13 lyrdslgeavkrigD.lhslrernrkareeLslkfeeirwlieevrtvlkkte 64 
                  l r sl ++vk+ gD +  +r+  + ar  +  + e+i+ +i+ +r+ ++k  
  MMETSP0890-20130614|32838_1 109 LTRGSLRDVVKKFGDsMDTMRSALASARAAMAERIEKIKESIARIREEISKVH 161
                  8899***********456789**************************998754 PP

>> PF04043.10  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   4.1e-05     0.023      73     133 ..     112     192 ..      99     215 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.1e-05
                  HHHHHHHHHHHHH---HHHHHHHH........................H-------HHHHHHHH---HHHHHHH.TTSST--H CS
   PF04043.10  73 aaledClelyddavddLsralaal......................kskasdyddvktwlsaaltnqetCedgfegkeaaeks 133
                  + l+d ++ ++d++d +++ala+                       ++  +d  dvkt + a+ + +e+C   +   e+++k+
  MMETSP0890-20130614|32838_1 112 GSLRDVVKKFGDSMDTMRSALASAraamaeriekikesiarireeiSKVHDDVRDVKTDVDATRALAESCDRRL--VETSQKQ 192
                  5555555566666666665555555555777888888888889998666677777****************999..3333332 PP

>> PF04108.7  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.1e-05     0.018     253     338 ..     114     203 ..     112     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.1e-05
    PF04108.7 253 lpdVvkelqevideiesnlkrvk....kllssklskieelisatkelleelekvkerlpkylaifadieelleeekesieeyiselseLn 338
                  l dVvk+  + +d + s l++++    + +++++++i+ + ++++++++++++vk+ ++++ a++++++++l e++++ +     ++ L+
  MMETSP0890-20130614|32838_1 114 LRDVVKKFGDSMDTMRSALASARaamaERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQDYANHGIQALC 203
                  789************998887661111555666666666667778899999********************9999986555555555555 PP

>> PF08376.5  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       8.6   4.9e+03      56      69 ..      39      52 ..      28      59 .. 0.47
   2 ?   15.0   1.2   2.1e-05     0.012      25     126 ..     127     226 ..     111     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 8.6
    PF08376.5 56 seaelaerlasvla 69
                 s+a+l++ l+++ +
  MMETSP0890-20130614|32838_1 39 SDAQLSRVLSQLGK 52
                 22234444444444 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.1e-05
    PF08376.5  25 rfrdalkaqraatDkalaalrsalaeldadaseaelaerlasvlaaldqLpalReqvdslsisaaeavafYtrlisallalvdelaqsaddaelarqlaalv 126
                   +r+al ++raa  ++++++++++a+++++ s+    + +++v++++d+  al e+ d++ ++ ++  ++ +  i+al a+v +l ++a+++    ql++++
  MMETSP0890-20130614|32838_1 127 TMRSALASARAAMAERIEKIKESIARIREEISKV--HDDVRDVKTDVDATRALAESCDRRLVETSQKQDYANHGIQALCAVVGDLLRNAANTPAIEQLRSFT 226
                  5799***************************987..*******************************************************99999998876 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   4.9e-05     0.028     199     267 ..     138     206 ..     112     223 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.9e-05
   PF00038.16 199 elqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekisel 267
                   + e +ek +e++ + +eei++++  +  +++++++ ++  es  r+l e+ ++ + + + +q+  + +
  MMETSP0890-20130614|32838_1 138 AMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQDYANHGIQALCAVV 206
                  556677888899999999999999999999999999999999999999999999999888888876655 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.4e-05     0.025     328     373 ..     134     179 ..      33     196 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.4e-05
    PF05667.6 328 kelealqeqidelessieeveeeikalkskikeveeeleevkeene 373
                  +   a+ e+i+++++si+ ++eei ++++ ++ v+  ++++++ +e
  MMETSP0890-20130614|32838_1 134 SARAAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAE 179
                  4444566677777777777777777777777777777766666655 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.7e-05     0.055      23      85 ..     128     190 ..     127     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.7e-05
                  HHHCHCCCCCCCCHHHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHH CS
    PF08702.5  23 iqdlldkyekdvdkkieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavsk 85 
                  +++ l +++  + ++iek++++++++ ++ +++++ v+++k+++  +++ a+  d +  ++s+
  MMETSP0890-20130614|32838_1 128 MRSALASARAAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQ 190
                  67889999999********************************99999888777666555554 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.7e-05     0.038     209     283 ..     130     204 ..     110     215 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.7e-05
    PF08317.6 209 eeleklr....eeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeisklke 283
                  + l+++r    e +++ +e+i++ r+++++ +++++++k++++a++   + +  ++ e      +++++ ++ i+ l++
  MMETSP0890-20130614|32838_1 130 SALASARaamaERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETS----QKQDYANHGIQALCA 204
                  445555511114455666777777777777888888888888877777777777776654....445666666666665 PP

>> PF07321.7  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   8.3e-05     0.047      61     119 ..     135     193 ..     107     201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.3e-05
    PF07321.7  61 gktvllkeleklqqqvgllrekeaelesqlaeakqrleaererlrqarkqlqearkaqe 119
                  ++++   ++ek+++ ++ +re   +   ++ ++k  + a r+  +++ + l e+ ++q+
  MMETSP0890-20130614|32838_1 135 ARAAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQD 193
                  55666778**********************************************99986 PP

>> PF10073.4  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   0.00017     0.094      10      41 ..     140     171 ..     135     193 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00017
    PF10073.4  10 ieRierLeeEkkeiaedikdvyaeakseGfDt 41 
                   eRie+++e  + i e+i +v  ++++   D+
  MMETSP0890-20130614|32838_1 140 AERIEKIKESIARIREEISKVHDDVRDVKTDV 171
                  46666666666666666666666655554444 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017     0.097      66     151 ..     127     213 ..      96     235 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
   PF03962.10  66 klkteleklkkeleelkqrikelqaeiekekkkreet.eereelleelkeleeelkklkkeleklakldpekveklkeetevakesa 151
                  +++++l+ +++ ++e  ++ike  a+i +e +k +++ ++ ++ ++  ++l e +++  +e ++ ++  ++ ++ l + +  ++++a
  MMETSP0890-20130614|32838_1 127 TMRSALASARAAMAERIEKIKESIARIREEISKVHDDvRDVKTDVDATRALAESCDRRLVETSQKQDYANHGIQALCAVVGDLLRNA 213
                  444444444444444444444444444444333333324444555666666666666666666666666666666666655555555 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.8   1.6e+03      34      47 ..      41      54 ..      30      64 .. 0.49
   2 ?   11.3   0.0   0.00037      0.21      22     104 ..     125     216 ..     113     222 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.8
    PF04513.7 34 aqlatlldaietqL 47
                 aql++ l ++ ++L
  MMETSP0890-20130614|32838_1 41 AQLSRVLSQLGKKL 54
                 23333333333322 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00037
    PF04513.7  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldt.........rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNi 104
                  ++++r+ +++  a++a+ +++i++++  + e+++++  ++++         +l+++ ++      + qd  +  +++l +++ +Ll + +N+
  MMETSP0890-20130614|32838_1 125 MDTMRSALASARAAMAERIEKIKESIARIREEISKVHDDVRDvktdvdatrALAESCDRRLVETSQKQDYANHGIQALCAVVGDLLRNAANT 216
                  67777777777788888888888888888887777777666655555545555555555555555555778888888888888888777775 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   0.00017     0.097      59     111 ..     130     182 ..     113     200 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00017
    PF10186.4  59 qqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdleasa 111
                   +l++++a+  erie+i++ i++++eei++    ++  k +++  r  +e+++
  MMETSP0890-20130614|32838_1 130 SALASARAAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCD 182
                  5688999999*******************999999999999999988888333 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.9   3.9e+03      92     104 ..      42      54 ..      29      63 .. 0.50
   2 ?   12.6   0.2   0.00012      0.07     124     174 ..     135     185 ..     117     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.9
    PF04156.9  92 eleeeleqleerl 104
                  +l + l+ql ++l
  MMETSP0890-20130614|32838_1  42 QLSRVLSQLGKKL 54 
                  3333333333333 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00012
    PF04156.9 124 elksleerlesleesikelakeirelreeisdlkeevqelrselerlqedl 174
                  ++ + +er+e+++esi+++++ei+++++ ++d k  v+  r  +e+++++l
  MMETSP0890-20130614|32838_1 135 ARAAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRL 185
                  5677889********************888888777777777666664443 PP

>> PF04849.8  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11        64     210     253 ..      37      80 ..      32      84 .. 0.83
   2 ?    7.7   0.1    0.0023       1.3     217     272 ..     137     192 ..     114     212 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.11
    PF04849.8 210 reasdqiaslseelakktedaerqqeeitkLlsqivdlqkkaks 253
                  +++++q++++  +l kk++++ +qq  + +   q +   ++ ++
  MMETSP0890-20130614|32838_1  37 SNSDAQLSRVLSQLGKKLDGLGQQQPSTPQVPTQTIVVRERSRN 80 
                  67899********************9999988887777666665 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0023
    PF04849.8 217 aslseelakktedaerqqeeitkLlsqivdlqkkaksyavenEeLqqlLaaakdaq 272
                  a+++e ++k  e  +r  eei+k   ++ d +  +    +  E   + L+++ ++q
  MMETSP0890-20130614|32838_1 137 AAMAERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQ 192
                  34555555555555555555555555555555555555555555555555444444 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00025      0.14       6      55 ..     140     189 ..     136     224 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00025
   PF00804.20   6 feqveeIrgeiekisekveelkrlhsrilaspdpdkqtkeeleeltaeik 55 
                   e++e+I++ i++i+e +++++  +++ ++  d+ +++ e ++    e+ 
  MMETSP0890-20130614|32838_1 140 AERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETS 189
                  57899******************999999999966555555544444444 PP

>> PF08651.5  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00043      0.25       8      46 ..     141     179 ..     117     192 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00043
    PF08651.5   8 eqLrkinevienlieslkaakgniekvqetvkstntlLd 46 
                  e ++ki e i+ ++e ++++++++  v++ v++t  l +
  MMETSP0890-20130614|32838_1 141 ERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAE 179
                  6789999*********************99999988865 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00054      0.31      66     102 ..     138     174 ..     112     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00054
    PF06148.6  66 glqeeleelesplaaarkkvesvrsklseveeevesk 102
                   ++e++e+++ ++a++r+++++v++ + +v+++v++ 
  MMETSP0890-20130614|32838_1 138 AMAERIEKIKESIARIREEISKVHDDVRDVKTDVDAT 174
                  4778888888888888888888888888888777654 PP

>> PF07730.8  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00052       0.3      20      62 ..     128     170 ..     120     177 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00052
    PF07730.8  20 lklqlelakrllekdpekareeldeirellrealaevRrllgd 62 
                  ++  l  a++ ++++ ek++e +++ire ++++ ++vR++ +d
  MMETSP0890-20130614|32838_1 128 MRSALASARAAMAERIEKIKESIARIREEISKVHDDVRDVKTD 170
                  55567778888899999*********************98665 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.7   3.8e+03     101     120 ..      41      60 ..      35      60 .. 0.72
   2 ?    9.9   0.4   0.00093      0.53       3      54 ..     141     192 ..     137     216 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 6.7
    PF07926.7 101 smLevelselekkieelneq 120
                  ++L + ls+l kk++ l +q
  MMETSP0890-20130614|32838_1  41 AQLSRVLSQLGKKLDGLGQQ 60 
                  57777888888888888766 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00093
    PF07926.7   3 aeisslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikh 54 
                  + i+++ke + r++++i+++ ++ + +k D+++ + +a+++ ++  ++ +k+
  MMETSP0890-20130614|32838_1 141 ERIEKIKESIARIREEISKVHDDVRDVKTDVDATRALAESCDRRLVETSQKQ 192
                  5688888888888888888888888888888888888888887766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1189  (0.0869661); expected 273.4 (0.02)
Passed bias filter:                     1008  (0.0737273); expected 273.4 (0.02)
Passed Vit filter:                       197  (0.014409); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:01.03
# Mc/sec: 607.23
//
Query:       MMETSP0890-20130614|32831_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-11   41.3   0.1    1.5e-10   40.2   0.0    1.6  1  PF02845.11 CUE domain
  ------ inclusion threshold ------
      0.061   12.8   2.5       0.21   11.1   0.1    2.1  2  PF05873.7  ATP synthase D chain, mitochondrial (ATP5H)
       0.11   12.6   2.2       0.13   12.3   0.6    1.8  2  PF09487.5  Bacterial type III secretion protein (HrpB2)
       0.29   10.9   2.5       0.36   10.5   0.1    1.9  2  PF04043.10 Plant invertase/pectin methylesterase inhibitor
        0.3   10.8   3.9       0.68    9.7   2.7    1.6  1  PF10241.4  Uncharacterized conserved protein
       0.33   10.2   9.8       0.89    8.8   6.8    1.7  1  PF00038.16 Intermediate filament protein
        3.6    7.0  12.1        7.5    5.9   8.4    1.6  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF02845.11  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   7.5e-14   1.5e-10       4      41 ..      52      89 ..      49      90 .. 0.94

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 7.5e-14
                 HHHHHHHHSTTS-HHHHHHHHHHSTTTHHHHHHHHHHC CS
   PF02845.11  4 mletLkemFPdldeevIravLrasngnvEaainaLLeg 41
                 +l++L+++FPd+d+e++r+vL ++  +v+aai++L ++
  MMETSP0890-20130614|32831_1 52 ALQHLRQVFPDMDDETLRSVLDSCSDDVDAAIDKLTSL 89
                 79*********************************876 PP

>> PF05873.7  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.21      34     114 ..      46     131 ..      41     142 .. 0.83
   2 ?    1.9   0.3     0.068   1.3e+02      25      95 ..     148     220 ..     134     231 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
                  SSSTT-----------------------.----TTTTSSS---------.....-----TTTT----------------------- CS
    PF05873.7  34 setyksrvaklpeklPkiDwayykknvpekaglvdsfekkyealkipye.....edkylkeVDaeekedvkeikeykaksekriqe 114
                   ety +++++l +  P +D + ++  ++  ++ vd    k  +l+i          k  ++ ++++++ v e+ e +   ++ri+ 
  MMETSP0890-20130614|32831_1  46 RETYIKALQHLRQVFPDMDDETLRSVLDSCSDDVDAAIDKLTSLRIASSqvvieSPKQPQQPEEWVDALVDEMRESRDVPDARIRA 131
                  79*****************************************9987663444347777888888888888877777777777765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.068
                  -------TTSSSTT-----------..------------.----TTTTSSS--------------TTTT---- CS
    PF05873.7  25 aelkalksksetyksrvaklpeklP..kiDwayykknvpekaglvdsfekkyealkipyeedkylkeVDaeek 95 
                   ++++l + +  +k++va  ++ l   + D a++k+  +e+   +++ +    +l + + + ++++ +D+ +k
  MMETSP0890-20130614|32831_1 148 EKAEKLEKENTLLKRAVAIQAQRLQesRDDIAKLKREAEEQRIELKKAQLTNYSLSVHLRQSNFSHDIDNTKK 220
                  4555566666666666655555443113466666666665555555555555566666666666666666665 PP

>> PF09487.5  Bacterial type III secretion protein (HrpB2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   2.9e+03      51      73 ..      63      86 ..      54     104 .. 0.60
   2 ?   12.3   0.6   6.7e-05      0.13      20      76 ..     136     191 ..     120     215 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.5
    PF09487.5 51 kqdealrkvlddva.aleenakem 73
                 ++de lr vld    ++ ++  ++
  MMETSP0890-20130614|32831_1 63 MDDETLRSVLDSCSdDVDAAIDKL 86
                 567777777776541333333444 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.7e-05
    PF09487.5  20 erFqalmasavqappaaqaseepslvsklvekqdealrkvlddvaaleenakemsln 76 
                  + F++ + s +++  ++ ++e   l++++v+ q++ l+++ dd+a l+++a+e+ ++
  MMETSP0890-20130614|32831_1 136 GAFEQFILSRSNEKAEKLEKE-NTLLKRAVAIQAQRLQESRDDIAKLKREAEEQRIE 191
                  668887777666544444444.58**************************9987665 PP

>> PF04043.10  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00019      0.36      54      96 ..      52      93 ..      46     123 .. 0.74
   2 ?   -0.4   0.1      0.42   8.3e+02      35      67 ..     155     187 ..     137     198 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00019
                 HHHHHHHHH--.--THHHHHHHHHHHHHHHHH---HHHHHHHH CS
   PF04043.10 54 aaarlsslskraakdprakaaledClelyddavddLsralaal 96
                 a+++l+ +  +   d++ +++l++C + +d+a+d L++   a 
  MMETSP0890-20130614|32831_1 52 ALQHLRQVFPD-MDDETLRSVLDSCSDDVDAAIDKLTSLRIAS 93
                 55666666666.889999*****************99876665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.42
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH--.-- CS
   PF04043.10  35 dprglaraavkaalanassaaarlsslskraak 67 
                    ++l++ av+   +++++  + +++l+++a++
  MMETSP0890-20130614|32831_1 155 KENTLLKRAVAIQAQRLQESRDDIAKLKREAEE 187
                  445799999999999999999999999887533 PP

>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.7   0.00035      0.68      24      76 ..     150     202 ..     138     211 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00035
    PF10241.4  24 lgrLekknreLlelnalsqarLkevraefaegtrllkemkkDLdwifkkvrsl 76 
                   ++Lek n  L    a+ ++rL+e r++ a+  r ++e + +L+  ++   sl
  MMETSP0890-20130614|32831_1 150 AEKLEKENTLLKRAVAIQAQRLQESRDDIAKLKREAEEQRIELKKAQLTNYSL 202
                  579****************************************9888766665 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.8   0.00046      0.89     177     250 ..     137     210 ..      44     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00046
   PF00038.16 177 qyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaele 250
                  ++e+ + +  +e  e+ ++  + l+++++ + + l++++ +i++l+r++++ +iel++ + ++ sl  +l+  +
  MMETSP0890-20130614|32831_1 137 AFEQFILSRSNEKAEKLEKENTLLKRAVAIQAQRLQESRDDIAKLKREAEEQRIELKKAQLTNYSLSVHLRQSN 210
                  58888888888888888999999******************************************999888654 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.4    0.0038       7.5      60     158 ..      97     197 ..      50     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0038
    PF04156.9  60 lllkapvqseedekiee....srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlke 158
                  +++++++++ ++e++++     r+++++ +++ + +++   +eq    l+ + ++ e+le++++ll+ +    ++rl++ +++i++l +e +e+r e+++++ 
  MMETSP0890-20130614|32831_1  97 VIESPKQPQQPEEWVDAlvdeMRESRDVPDARIRAARALGAFEQ--FILSRSNEKAEKLEKENTLLKRAVAIQAQRLQESRDDIAKLKREAEEQRIELKKAQL 197
                  55666666666666666755555555555555555555444433..367788888999999999999999999999999999999999999999944443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1151  (0.0841867); expected 273.4 (0.02)
Passed bias filter:                      576  (0.0421299); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.49s 00:00:01.18 Elapsed: 00:00:00.81
# Mc/sec: 695.24
//
Query:       MMETSP0890-20130614|32861_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   19.6   0.0     0.0011   18.4   0.0    1.6  1  PF13414.1  TPR repeat
  ------ inclusion threshold ------
       0.06   13.1   0.0       0.22   11.3   0.0    2.0  1  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.6e-07    0.0011      23      65 ..     209     250 ..     209     253 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.6e-07
    PF13414.1  23 ieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  i++++kA  l+p  ae ++ +A+++l++  +y+eA+ +++  l
  MMETSP0890-20130614|32861_1 209 IDMLTKASTLNPFIAEPHLTRAQILLQMA-RYDEARIAAQTGL 250
                  799**************************.7****99988766 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.3e-05      0.22       1      29 [.     223     251 ..     223     254 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.3e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAle 29 
                  ae +  ++++++++ +y+eA+ a +  l 
  MMETSP0890-20130614|32861_1 223 AEPHLTRAQILLQMARYDEARIAAQTGLD 251
                  677999***************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 986.92
//
Query:       MMETSP0890-20130614|32870_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-07   29.2   0.0    8.6e-07   28.3   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    2.5e-06   27.1   0.0    3.9e-06   26.5   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00085   19.1   0.0     0.0015   18.3   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.059   12.5  21.8      0.084   12.1  15.1    1.2  1  PF04652.11 Vta1 like


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   2.5e-10   8.6e-07       6      70 .]     103     168 ..      98     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 2.5e-10
                  S.....TTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   6 L.....ppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  L     p    ee+L+e+Fs +Gp ++++l ++    +  fa ++F   eda kA  + +++ l+gr+++
  MMETSP0890-20130614|32870_1 103 LeirsvPVHKVEENLREIFSTCGPLQKVRLGPN----NATFAHCQFIHLEDAIKAYHKFDNYLLNGRTMR 168
                  554444666679********************6....******************************975 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.1e-09   3.9e-06       1      56 []     117     172 ..     117     172 .. 0.97

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.1e-09
    PF13893.1   1 LyklfskfGkverikifrkkggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  L+++fs +G+ +++++ +++  +A  +f  +e+A ka+ ++++ +l+g+t++v+++
  MMETSP0890-20130614|32870_1 117 LREIFSTCGPLQKVRLGPNNATFAHCQFIHLEDAIKAYHKFDNYLLNGRTMRVDFA 172
                  799****************99999999***************************97 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.5e-07    0.0015      12      67 ..     114     166 ..     103     168 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.5e-07
    PF14259.1  12 eedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrt 67 
                  ee lre+fs +g++++vr+ +n    + +fA  +f + edA ka+ k +   l+grt
  MMETSP0890-20130614|32870_1 114 EENLREIFSTCGPLQKVRLGPN----NATFAHCQFIHLEDAIKAYHKFDnYLLNGRT 166
                  89*******************9....58*******************988999*998 PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  15.1   2.4e-05     0.084     138     337 ..      72     352 ..      47     366 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.4e-05
                  HH-----XXXXXXXXXXXXXXXX.............................................................................................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX......................................................................XXXXXXXXXXXHHHHHH...... CS
   PF04652.11 138 iakalkegedpnpgppideeeeeeae........................................................................sveeipdeqe.aqesldssslpgeassasas.pksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfpspdeseasnk..dsqlPsaPty..................aqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplqsvapqi 337
                  +++ ++++++p++ pp++e +e +                                                                           +  +p+e++ a +++ +++  +++ss s++ p+s+ ++  s+++ +   +  ++s++  d +++ ++ps+  sssp   +    ++  +s++  +s+lP+   +                  a +   s++ v Pp+ +++++s+ss   ++++ +pp+    + +++  ss+  + + +s++++qpl+s +++ 
  MMETSP0890-20130614|32870_1  72 MNNEMDNKKKPPALPPRTEMAEPSSTlfignleirsvpvhkveenlreifstcgplqkvrlgpnnatfahcqfihledaikayhkfdnyllngrtmrvDFAHTPQEKQlAGKQTGKFQRGRASSSFSRErPNSKYNQNYSNNHHQYH-SSHPPSSFRGDTGRKRPPPSQYHSSSPDYYQ---RPNRHHSPQrhPSPLPD---QrhlrdndrsryhpissedAPIGGFSAPGVVPPNIQPQQHSPSS---FYQS-PPPADNGAPQFSY--SSPDKNLPYYSQQAHQPLPSHPRHL 352
                  56777788888888888877777555999999999999999999999999999999999999999999999999999999999********9*999998889999998966677777766665554433033333333333333333.4455555666666666666666665544443...34444444222344444...33447777777777777777788889999999998877777777...2222.2222222223333..2223334444445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.81
# Mc/sec: 1097.59
//
Query:       MMETSP0890-20130614|32876_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0012   18.6   1.2       0.11   12.2   0.0    3.1  3  PF11457.3  Protein of unknown function (DUF3021)
  ------ inclusion threshold ------
       0.46    9.1  11.8        9.7    4.7   8.2    2.4  1  PF01757.17 Acyltransferase family


Domain annotation for each model (and alignments):
>> PF11457.3  Protein of unknown function (DUF3021)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0095        65      65     100 ..      26      61 ..      25      73 .. 0.86
   2 !   12.2   0.0   1.6e-05      0.11      25      94 ..     227     296 ..     214     303 .. 0.73
   3 ?   -0.9   0.0      0.18   1.2e+03      83     136 ..     442     496 ..     434     497 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0095
    PF11457.3  65 FetedlsllkqtliHfiltlllvlllailngwfpls 100
                  F +ed+  l++t++ + +++++++ll +l++w   +
  MMETSP0890-20130614|32876_1  26 FTREDVAGLTSTVMELDAVITGFVLLLVLIEWSRRR 61 
                  88999999************************8665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.6e-05
    PF11457.3  25 fsllnssskylpsspvstknilsvlle.lligaliglasliFetedlsllkqtliHfiltlllvlllailn 94 
                   sl+ ++   +pss+  +++   ++   +l+g++++++++i ++e+++  k++ +H ++ + +v + a ++
  MMETSP0890-20130614|32876_1 227 CSLFVAQ-AAIPSSQNLASSWDRSVADmSLVGCCVYMLNFISANESFTPNKKSRCHRAVLACCVAVAAAIL 296
                  3333333.445555554444444444445*******************************99999988765 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.18
    PF11457.3  83 tlllvlllailngwfplsvi.alllftiiFiliYlliWlilylklkkeikkinqk 136
                  ++l+   l+i++++  ++ + +  ++t+ F+++ +  W    l++  +i+ + q+
  MMETSP0890-20130614|32876_1 442 AALTAWTLVIFLEYDDFQTKrKQPKVTATFAVVNTSSWTTPLLSSGPQIAPLPQQ 496
                  3444444444444444433338888888899888888887777777666666666 PP

>> PF01757.17  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.2    0.0014       9.7      77     210 ..     150     299 ..     148     490 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0014
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01757.17  77 Rilrllipfliwllliilliwlvaghiqanasanvtlfdet.......kglmfllfefpatghlWfLpal..........fvlylllpll.......lrllrkvrsshlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGallgda 210
                  R l l+ ++l++ +l +++++ +    + ++s+++++++          g+ fl+    +  h+W++ +l          fv                +l+  + +s+  + l+++++++l fi ++   +++        +vla+++ ++ a+l+ a
  MMETSP0890-20130614|32876_1 150 RGLVLVPAYLVYGVLAAISTARISRKLNDETSFWPAVARLIlasiaaiSGHAFLDDTPLPSFHWWSMNFLplsallscslFV-------AqaaipssQNLASSWDRSVADMSLVGCCVYMLNFISANESFTPNK-KSRCHRAVLACCVAVAAAILRTA 299
                  5566788999999*************************999************************99999877555554444.......35555555***********************99999887444433.33344444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       542  (0.0396431); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:01.03
# Mc/sec: 1319.16
//
Query:       MMETSP0890-20130614|32890_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-27   93.0   0.2    1.4e-26   92.0   0.1    1.6  1  PF05026.8  Dcp2, box A domain
    6.8e-13   48.3   0.0    1.1e-12   47.6   0.0    1.3  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF05026.8  Dcp2, box A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.1   2.1e-30   1.4e-26       3      85 .]      25     108 ..      23     108 .. 0.97

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 2.1e-30
                  HHHHHHHHHTTT--GGGSS-HHHHHHHHHHHHHHHHHTTTTT-T.TS-----HHHHHHHHHH-THHHHHHT--HHHHHHHH--- CS
    PF05026.8   3 iLddllvRFivnlpeeelssvervlFqveeAhWfYeDflrelnp.slpslslreFakqllekcpllqkfkedleealeefkkYk 85 
                  +L+d+++RF++nlp+ el+s+ r++Fq+e+AhWfYeDfl + +  +lp+++lr+Fa++l+++c ll+ +   +e+ +++f++Yk
  MMETSP0890-20130614|32890_1  25 ALEDVATRFLTNLPTSELESADRLMFQIEQAHWFYEDFLADAEGsKLPHMNLRQFAQHLFARCALLKPLIGVYEDLFNNFRAYK 108
                  79*************************************999877**************************************8 PP

>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   1.6e-16   1.1e-12       8     132 ..     117     233 ..     110     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 1.6e-16
                  EEEETTS.EEEEEEECSTTSSTTEEEESBEEETTTTSHHHHHHHHHHHHHHS-EE...EEEEEEEEEEEEETTCCCSEEEEEEEEEEEEETGGGCSTTTSTEEEEEEEEHHHHHHHHHCTTHHHHHHHH CS
   PF00293.23   8 illnedg.kvLlvqrsrskltapglwefPgGkvdkgEspeeaAvRElkEEtGidl...ekvrlvgvanydaptddpkreevifflaelpddepeiilnttEvsevrwvpleelldlalagklrylipll 132
                   ll+++  k++lv+   ++      w +P+Gk+ ++E+ +++A+RE++EEtG+d+     +  ++ ++  ++++     + ++ +  +p d p      +E+s+v+++p++ l++++ + ++  +ip+l
  MMETSP0890-20130614|32890_1 117 ALLDKTMtKIVLVRNWQKT-----SWGLPKGKLNQNEATLDCAIREVLEETGYDAsdkIANSDDPIFFLSDTQP-----VHVYIVPNVPLDFPFKPRVRKEISAVSFYPIDHLPKEQWKVDR--VIPHL 233
                  45555557******99995.....9*****************************87744444444444444444.....467778889999999999999***************9998773..55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.56
# Mc/sec: 1404.18
//
Query:       MMETSP0890-20130614|32885_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-24   82.2  21.7    2.3e-11   42.9   1.8    6.7  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.14   11.6   1.0        0.4   10.2   0.7    1.7  1  PF13414.1  TPR repeat
       0.33   11.5   2.7         20    6.0   0.2    2.6  2  PF13428.1  Tetratricopeptide repeat
        1.2    9.7   6.2        1.3    9.6   0.8    2.4  2  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   1.8   6.8e-15   2.3e-11       2      39 .]      22      59 ..      21      59 .. 0.98
   2 !   16.6   0.1   1.4e-06    0.0047       7      38 ..      74     106 ..      70     107 .. 0.89
   3 ?   -3.7   0.0       3.5   1.2e+04      20      36 ..     142     156 ..     138     156 .. 0.71
   4 ?    0.6   0.0      0.15   5.2e+02      13      37 ..     179     204 ..     173     206 .. 0.79
   5 ?   -2.1   0.2       1.1   3.7e+03      15      30 ..     252     277 ..     243     278 .. 0.68
   6 !   15.8   0.9   2.6e-06    0.0087      14      38 ..     305     379 ..     302     380 .. 0.76
   7 !   13.7   0.0   1.1e-05     0.039       7      38 ..     390     421 ..     385     422 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 6.8e-15
                 EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 ec+++l+gH + ++cv++s+ g +++sgS+D+t+ lW+
  MMETSP0890-20130614|32885_1 22 ECVQVLQGHRGCCNCVRWSDKGDWFVSGSDDRTVGLWS 59
                 8************************************7 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.4e-06
                  EESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                   + H++ + + +fsp+  +++a++++Dg + l 
  MMETSP0890-20130614|32885_1  74 VTVHSHNIFDACFSPNqASIVATCGADGRVGLV 106
                  577*************************99875 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.5
                  ESSSTEEEEEETTSEEE CS
   PF00400.27  20 spdgpllasgSrDgtir 36 
                  sp+  +++ + +Dg++r
  MMETSP0890-20130614|32885_1 142 SPE--CFLVAFYDGKLR 156
                  455..888888888876 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.15
                  SEEEEEEESS.STEEEEEETTSEEEE CS
   PF00400.27  13 pVtcvafspd.gpllasgSrDgtirl 37 
                  ++++v + p+ + ++a g +D+ ir+
  MMETSP0890-20130614|32885_1 179 GCCSVEVRPSqPYVFALGTDDSAIRI 204
                  68899999997777777779998888 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 1.1
                  EEEEEESS..........STEEEEEE CS
   PF00400.27  15 tcvafspd..........gpllasgS 30 
                   ++++++d            ++ sgS
  MMETSP0890-20130614|32885_1 252 MSCSCADDddnndddnddNEHCWSGS 277
                  56666666777777777788888887 PP

  == domain 6    score: 15.8 bits;  conditional E-value: 2.6e-06
                  EEEEEEESS..................................................STEEEEEETTSEEEEE CS
   PF00400.27  14 Vtcvafspd..................................................gpllasgSrDgtirlW 38 
                  ++ va++p+                                                  g++la+g++Dg++++W
  MMETSP0890-20130614|32885_1 305 ISGVAWNPNndtklaanfrgddvfvfnvspsahklssplrfrgrdniatcakevrwlfgGTCLATGGDDGCLYIW 379
                  66777777777777777777777777777777777777777777777777777777777**************** PP

  == domain 7    score: 13.7 bits;  conditional E-value: 1.1e-05
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                   r+  + V+++a +p+ pll++++ D+ i+l+
  MMETSP0890-20130614|32885_1 390 VRADRNVVNSLAPHPNLPLLVTSGIDSEIKLF 421
                  5667789***********************98 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   0.00012       0.4       2      36 ..     520     554 ..     519     595 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnn 36 
                  +A +l+e +  + ++g +  A + y+ Al+l   +
  MMETSP0890-20130614|32885_1 520 KATSLREHADSYARRGAHTAAARSYDAALALTRFS 554
                  68899*************************96433 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0059        20       8      30 ..     528     550 ..     522     563 .. 0.89
   2 ?    4.9   0.1     0.013        46       7      30 ..     575     598 ..     573     616 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0059
    PF13428.1   8 arallalGdpdeAiallrralal 30 
                  a+ ++++G + +A++ +++alal
  MMETSP0890-20130614|32885_1 528 ADSYARRGAHTAAARSYDAALAL 550
                  789******************96 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.013
    PF13428.1   7 larallalGdpdeAiallrralal 30 
                   ar ++  +++d+A++llr++  +
  MMETSP0890-20130614|32885_1 575 AARQHIIEHEYDAALRLLRKIQTR 598
                  68999999***********98554 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.8   0.00039       1.3      35      61 ..     525     551 ..     514     567 .. 0.77
   2 ?    2.2   0.2     0.079   2.7e+02      12      39 ..     584     616 ..     573     617 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00039
    PF13432.1  35 lllaeallrlgrldeAaallraalala 61 
                   + a++++r+g + +Aa+ ++aalal+
  MMETSP0890-20130614|32885_1 525 REHADSYARRGAHTAAARSYDAALALT 551
                  567788888888888887777777665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.079
    PF13432.1  12 dydeAlaaleaalala.....Peaaeallllae 39 
                  +yd+Al++l+++  +      ++ ++++ l+a 
  MMETSP0890-20130614|32885_1 584 EYDAALRLLRKIQTRSegllpYLSPDFYRLYAL 616
                  689999999999888877777667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.39s 00:00:01.51 Elapsed: 00:00:00.90
# Mc/sec: 1783.95
//
Query:       MMETSP0890-20130614|32887_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.7    6.5  16.5      0.031   13.8   2.2    3.2  3  PF09769.4 Apolipoprotein O


Domain annotation for each model (and alignments):
>> PF09769.4  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.2   2.3e-06     0.031      30      93 ..     256     331 ..     214     335 .. 0.76
   2 ?    0.1   1.1     0.038   5.2e+02      11      60 ..     353     403 ..     344     425 .. 0.71
   3 ?   -1.7   0.1      0.14   1.9e+03      16      40 ..     429     457 ..     419     466 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-06
    PF09769.4  30 gensl............ysvrptdrLeaqirsaRlfleeklsavedavntvksrvldtersvtstvaslkpppeel 93 
                  +++++            +  ++ ++L +qi+  R+ +e+++++++d++++ ++  ++t ++  + v ++ ++ e+l
  MMETSP0890-20130614|32887_1 256 EKEEFsnvtpknkevdiELQSECQTLRDQINNDRTEFENECKRLRDKYEQHETELDNTCQQLRDQVEKVESECEDL 331
                  22222222333344577889999********************************************999998886 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.038
    PF09769.4  11 vppeelpiytk.peeeakllgenslysvrptdrLeaqirsaRlfleeklsa 60 
                  +   el+++++  ++++kl++++ ++ +++ +rL++ ++++ +++ +++++
  MMETSP0890-20130614|32887_1 353 IARRELNEKKSrEAKTIKLTETDAIALEQERKRLAETVARLKTQFLQETER 403
                  555666666665666667666777799999999999999998887776654 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.14
    PF09769.4  16 lpiytk..peeeakllgensl...ysvrpt 40 
                  +pi++k  pe+++++ +++s    + v p+
  MMETSP0890-20130614|32887_1 429 SPITQKalPEQKSEVQNHDSNkeeE-VVPP 457
                  5566666688888877777766642.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2076  (0.151843); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.77u 0.45s 00:00:02.22 Elapsed: 00:00:01.13
# Mc/sec: 1343.22
//
Query:       MMETSP0890-20130614|32901_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00056   19.7   0.1     0.0011   18.9   0.1    1.5  1  PF06969.11 HemN C-terminal domain


Domain annotation for each model (and alignments):
>> PF06969.11  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   7.7e-08    0.0011       2      40 ..      67     101 ..      66     115 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 7.7e-08
   PF06969.11   2 seedrlrErlilgLRlteGvdlaafeqrfgldfeeelep 40 
                  + ed l E l+  LR+ +G++la+++ + g     + ++
  MMETSP0890-20130614|32901_1  67 TLEDALAEDLMTSLRTAAGLPLARVRSLAGPK---H-LK 101
                  789*************************9943...2.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.53
# Mc/sec: 700.82
//
Query:       MMETSP0890-20130614|32899_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.60
# Mc/sec: 950.55
//
Query:       MMETSP0890-20130614|32907_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-09   37.9   0.1    1.9e-09   37.0   0.1    1.4  1  PF00107.21 Zinc-binding dehydrogenase
      1e-08   36.0   0.0    2.4e-08   34.8   0.0    1.6  1  PF13602.1  Zinc-binding dehydrogenase
      6e-08   32.3   0.2      2e-07   30.5   0.0    2.0  2  PF08240.7  Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
       0.16   11.7   0.1       0.34   10.6   0.1    1.5  1  PF10548.4  P22AR C-terminal domain


Domain annotation for each model (and alignments):
>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   5.4e-13   1.9e-09       1      92 [.     144     232 ..     144     248 .. 0.94

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 5.4e-13
                  ----HHHHHHHHH--EEEEEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC---- CS
   PF00107.21   1 GvGlaavqlAkalGarviavdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvggts 92 
                  GvGlaa+ +++ lGa  ++v+++eek++ +k+  a++vi +++   +++++el +   +d+v+++ g + +f +a++ l  +Gr++ +g+t 
  MMETSP0890-20130614|32907_1 144 GVGLAALTICQSLGAIAVGVVGNEEKVAVCKS--AKRVIVRRKIPDAQYLAELDDSGPFDIVLDSLG-AGFFHAAFDRLEQQGRLIHFGATA 232
                  9******************************9..67********9********99999*********.*********************997 PP

>> PF13602.1  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0     7e-12   2.4e-08      14     127 .]     190     339 ..     175     339 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 7e-12
    PF13602.1  14 f....lagdgvDvvldtvg.eageelleallrvl.ggGrlvsigg.............................klltaaareggaarkllflfs..vkan.....eeraeeleelaalveaGklkp.vvdrvfpLeeaaeAhrrlesgrarGKiVl 127
                  +     +++ +D+vld++g        +a+++ l  +Grl+  g+                             ++lt +  +g  +++l++l +  +        ++  ++l+ l a  ++ k+ p +v+r+f+++++++A+r l+ g+++GK+V+
  MMETSP0890-20130614|32907_1 190 YlaelDDSGPFDIVLDSLGaGFF----HAAFDRLeQQGRLIHFGAtasygsarsgilkwpqliwayitrpkidpGILTSTN-RGVLGFNLIWLCNqhL--AmnnclDNLLQALTSLGADQKNPKIPPaHVGRTFSFKQLPDALRFLQGGKSVGKVVV 339
                  2555555788*********5555....5555555588***99994599999*********999999999988875555555.6777777777776331..2665665555556666666666668854899*************************8 PP

>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     6e-11     2e-07       2      60 ..      14      79 ..      13      88 .. 0.83
   2 ?   -2.1   0.2      0.83   2.9e+03      54      63 ..     131     140 ..     122     181 .. 0.63

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6e-11
                 TEEEEEEEEB---HHHHHHH--.........TTTT--SSEE----BE-EEEEE----B------EEE CS
    PF08240.7  2 gevlvkvkaaGiCgsDlhivkge........kelevklplilGhEivGiveevgegvkklkvGdrvv 60
                 +ev+vkv+a+G++  D+ +v g            +++  +++G E++G+v e g+   ++k+Gdrv+
  MMETSP0890-20130614|32907_1 14 DEVVVKVNAIGLNFADIFTVLGLysaatqeaAVNNQQKYFVPGLEFAGVVLEAGRAA-NFKIGDRVY 79
                 89****************999986666655444444445***************776.9******97 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.83
                  ----EEEE-- CS
    PF08240.7  54 kvGdrvvvep 63 
                  ++G+rv+v+ 
  MMETSP0890-20130614|32907_1 131 QKGSRVLVHS 140
                  4455555433 PP

>> PF10548.4  P22AR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0001      0.34      15      42 ..     273     300 ..     272     304 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
    PF10548.4  15 sLvWlwfaaermqellkelypaLkalgS 42 
                  +L+Wl+ ++  m++ l +l +aL +lg+
  MMETSP0890-20130614|32907_1 273 NLIWLCNQHLAMNNCLDNLLQALTSLGA 300
                  7***********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:00.66
# Mc/sec: 1270.80
//
Query:       MMETSP0890-20130614|32921_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-05   22.5   0.5        2.1    8.3   0.0    3.9  4  PF01535.15 PPR repeat
    0.00014   21.6   1.0      0.083   12.7   0.1    3.5  4  PF13041.1  PPR repeat family
     0.0042   17.1   5.0        1.9    8.8   0.1    4.2  5  PF13812.1  Pentatricopeptide repeat domain
  ------ inclusion threshold ------
       0.19   11.5   2.2        3.2    7.7   0.3    3.0  3  PF07719.12 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00095       3.2      14      30 ..      12      28 ..       7      29 .. 0.86
   2 ?    1.6   0.0     0.087     3e+02       3      28 ..      36      61 ..      34      64 .. 0.84
   3 ?   -1.0   0.0      0.57     2e+03      14      24 ..      82      92 ..      80      93 .. 0.84
   4 !    8.3   0.0   0.00062       2.1       2      23 ..     128     149 ..     127     151 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00095
   PF01535.15 14 GkleeAlelfkeMkekG 30
                 +++ eAl lf++Mk++ 
  MMETSP0890-20130614|32921_1 12 KNYAEALYLFDQMKDRK 28
                 6788**********986 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.087
   PF01535.15  3 ynslIsgyckaGkleeAlelfkeMke 28
                  n+ +++  k+++ + A+ +++  ke
  MMETSP0890-20130614|32921_1 36 LNTAMHAATKCNDAKRAVAIIHAAKE 61
                 59999*************99886666 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.57
   PF01535.15 14 GkleeAlelfk 24
                 ++ e Al lf+
  MMETSP0890-20130614|32921_1 82 NDTESALALFQ 92
                 7899*****97 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.00062
   PF01535.15   2 tynslIsgyckaGkleeAlelf 23 
                  ++n l+s++   G+++ +lelf
  MMETSP0890-20130614|32921_1 128 SFNKLLSVCLNGGRWSHVLELF 149
                  79*******************9 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.4e-05     0.083       6      44 ..       1      39 [.       1      45 [. 0.80
   2 ?    0.8   0.0      0.13   4.5e+02       7      35 ..      37      65 ..      32      76 .. 0.86
   3 !    5.3   0.0    0.0052        18       5      26 ..     128     149 ..     124     151 .. 0.92
   4 ?   -3.0   0.0         2     7e+03      17      25 ..     174     182 ..     173     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.4e-05
    PF13041.1  6 YNtlIsglckkgkveeAfklfneMkkrgikPnvyTYsil 44
                 Y++ I + ++ +++ eA+ lf++Mk+r+ + +    ++ 
  MMETSP0890-20130614|32921_1  1 YTAGILAQFHLKNYAEALYLFDQMKDRKFQMTLTVLNTA 39
                 6666778888999**************999876666655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
    PF13041.1  7 NtlIsglckkgkveeAfklfneMkkrgik 35
                 Nt +++  k ++ + A+ + +  k++++k
  MMETSP0890-20130614|32921_1 37 NTAMHAATKCNDAKRAVAIIHAAKENKLK 65
                 99999999********9999888887765 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0052
    PF13041.1   5 tYNtlIsglckkgkveeAfklf 26 
                  ++N l+s +++ g+++  ++lf
  MMETSP0890-20130614|32921_1 128 SFNKLLSVCLNGGRWSHVLELF 149
                  89******************99 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 2
    PF13041.1  17 gkveeAfkl 25 
                  g++++Af++
  MMETSP0890-20130614|32921_1 174 GQWQQAFSI 182
                  8999**987 PP

>> PF13812.1  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00057       1.9       4      30 ..       1      27 [.       1      31 [. 0.86
   2 ?    4.3   0.1     0.015        51       3      23 ..      35      55 ..      33      64 .. 0.87
   3 ?   -1.7   0.0       1.3   4.6e+03      14      24 ..      81      91 ..      71      92 .. 0.85
   4 ?    3.0   0.0     0.041   1.4e+02       2      24 ..     127     149 ..     126     150 .. 0.88
   5 ?   -1.9   0.0       1.5     5e+03      13      24 ..     172     183 ..     162     185 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00057
    PF13812.1  4 yntlitalaksgrpeaAlalleeMeqq 30
                 y++ i+a ++  + ++Al l+++M+++
  MMETSP0890-20130614|32921_1  1 YTAGILAQFHLKNYAEALYLFDQMKDR 27
                 555589999***************986 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.015
    PF13812.1  3 tyntlitalaksgrpeaAlal 23
                  +nt + a+ k+++ ++A a+
  MMETSP0890-20130614|32921_1 35 VLNTAMHAATKCNDAKRAVAI 55
                 689*************99876 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.3
    PF13812.1 14 sgrpeaAlall 24
                 s++ e+Alal+
  MMETSP0890-20130614|32921_1 81 SNDTESALALF 91
                 67899999998 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.041
    PF13812.1   2 etyntlitalaksgrpeaAlall 24 
                   ++n l+  +++ gr+  +l+l+
  MMETSP0890-20130614|32921_1 127 KSFNKLLSVCLNGGRWSHVLELF 149
                  69*************98888776 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 1.5
    PF13812.1  13 ksgrpeaAlall 24 
                    g++++A+ + 
  MMETSP0890-20130614|32921_1 172 LGGQWQQAFSIA 183
                  468999998776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3   0.00094       3.2      10      26 ..       7      23 ..       6      26 .. 0.89
   2 ?   -2.6   0.0       1.8   6.3e+03      15      25 ..      82      92 ..      80      92 .. 0.74
   3 ?    1.9   0.0     0.067   2.3e+02      11      33 ..     170     192 ..     163     193 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00094
                 HHHHTT-HHHHHHHHHH CS
   PF07719.12 10 ayyklgdyeeAleafek 26
                 a ++l++y+eAl +f++
  MMETSP0890-20130614|32921_1  7 AQFHLKNYAEALYLFDQ 23
                 6799**********987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.8
                 T-HHHHHHHHH CS
   PF07719.12 15 gdyeeAleafe 25
                 +d e Al++f+
  MMETSP0890-20130614|32921_1 82 NDTESALALFQ 92
                 67788888886 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.067
                  HHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  11 yyklgdyeeAleafekAleldPn 33 
                  ++  g++++A    ++A  l+ n
  MMETSP0890-20130614|32921_1 170 AELGGQWQQAFSIARQAHTLNEN 192
                  556699****9999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.93
# Mc/sec: 618.41
//
Query:       MMETSP0890-20130614|32914_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       845  (0.0618051); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.36s 00:00:01.38 Elapsed: 00:00:00.86
# Mc/sec: 1777.76
//
Query:       MMETSP0890-20130614|32924_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   12.7   0.1        1.4    8.7   0.0    2.3  2  PF07989.6 Microtubule associated


Domain annotation for each model (and alignments):
>> PF07989.6  Microtubule associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0001       1.4      44      74 ..     149     179 ..     134     180 .. 0.87
   2 ?    1.5   0.0     0.018   2.5e+02      19      44 ..     212     237 ..     211     262 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0001
    PF07989.6  44 enielkvevetlkrelkekkklLkkaekale 74 
                  +n +  v++e+l+rel++  ++L++ae+++e
  MMETSP0890-20130614|32924_1 149 TNSQANVNTESLRRELDKALDNLRDAEDRAE 179
                  6888999********************9976 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.018
    PF07989.6  19 LKLkiyFLeerlqkraeesveellke 44 
                  LK +  FLe  l+ +  +++ +l+ +
  MMETSP0890-20130614|32924_1 212 LKARWNFLESDLEAARHRFERALIDD 237
                  899999*******9999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       742  (0.0542715); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.76
# Mc/sec: 961.70
//
Query:       MMETSP0890-20130614|32925_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 914.67
//
Query:       MMETSP0890-20130614|32928_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   13.7   0.0       0.06   12.7   0.0    1.5  1  PF03522.10 K-Cl Co-transporter type 1 (KCC1)


Domain annotation for each model (and alignments):
>> PF03522.10  K-Cl Co-transporter type 1 (KCC1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.4e-06      0.06       7      28 ..      91     112 ..      88     113 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.4e-06
   PF03522.10   7 iLRLtSvgSDedeeteaatekv 28 
                  +LR +S+ S ed++  a  ek+
  MMETSP0890-20130614|32928_1  91 VLRFESIKSEEDNNADAENEKI 112
                  7********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 1195.33
//
Query:       MMETSP0890-20130614|32932_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.54
# Mc/sec: 323.95
//
Query:       MMETSP0890-20130614|32935_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-18   64.8   0.0    9.8e-18   64.5   0.0    1.1  1  PF00106.20 short chain dehydrogenase
    2.2e-07   30.8   0.0    2.8e-07   30.4   0.0    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
     0.0011   18.8   0.0     0.0017   18.2   0.0    1.3  1  PF13460.1  NADH(P)-binding
  ------ inclusion threshold ------
      0.012   15.2   0.5      0.068   12.7   0.4    2.0  1  PF08659.5  KR domain
       0.02   14.5   0.1      0.039   13.6   0.1    1.4  1  PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
      0.027   14.4   0.0      0.049   13.6   0.0    1.4  1  PF01488.15 Shikimate / quinate 5-dehydrogenase
      0.048   12.6   0.0      0.076   11.9   0.0    1.2  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0     5e-21   9.8e-18       3     166 ..      37     206 ..      35     207 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 5e-21
                  EEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH-.---SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH..........HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
   PF00106.20   3 vliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkal.gpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld..........adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                  v i G+++g+G+ l+ ++ e+ga  +v+ srr     +++++++++ +g  + v+ +Dv d +  +++l+++ kal g   +++ n g ++ +++ +   e+ +++l++++++ +  ++   +          ++ g ++++SS +g +g p  ++Y+a+k+al+++  s r e+
  MMETSP0890-20130614|32935_1  37 VWIIGASSGIGASLVCEYTERGA-SVVISSRR--VSLLQAVAEKCN-AGK-TFVLPLDVLDINTHENALNAATKALsGIPEILILNSGRSQRQTILDAPLETSREILELNFFALISIARIWSKqllsmthgttKQDGQLIITSSLSGKIGTPAGSSYSASKFALHGFFDSFRMEM 206
                  779******************66.77777888..799999988888.444.56788*****************66515569************************************9999999999998886669*********************************999885 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.4e-10   2.8e-07       5     194 ..      43     231 ..      40     248 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.4e-10
                  ------HHHHHHHH---EEEE---HH-----------------...-----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB---......--EEEEEE------.-------------THHHHHHHHHH----S---EEEEEE-------------- CS
    PF13561.1   5 dnsigwaiakalaeaGaevilttwvpaklkkkvqelakelpad...vvplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneg......gSivalsylaserv.ipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggi 194
                  +++ig++  +   e Ga+v+++++  +     +q++a++++a    v+plDv + ++ ++ ++++++ l g  +il+   + s++    + +l++  +  +++l+ + + l+s+++   ++ l+  +        ++ ++ + s ++ +p  + +s++K aL   + ++ +e+ +   i v     Gp+ +  ak + g 
  MMETSP0890-20130614|32935_1  43 SSGIGASLVCEYTERGASVVISSRRVSL----LQAVAEKCNAGktfVLPLDVLDINTHENALNAATKALSGIPEILILNSGRSQR----QTILDAPLETSREILELNFFALISIARIWSKQ-LLSMThgttkqDGQLIITSSLSGKIgTPAGSSYSASKFALHGFFDSFRMEMYP--RINVLIACPGPVVSEIAKFAHGK 231
                  69***********************998....8999999995545579********************97777999999999998....67788888888888889999999988888764.4333333555544555555667777366666*********************9..8888889999*999999988765 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.9e-07    0.0017       2      59 ..      38     101 ..      37     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 8.9e-07
    PF13460.1   2 aviGAtGktGrrivkellarghevtalvRnpsklpe......ssgvtivkkDlfdledlaeala 59 
                   +iGA++ +G ++v e ++rg +v+  +R+ s l++      + ++ ++ +D+ d ++ ++al+
  MMETSP0890-20130614|32935_1  38 WIIGASSGIGASLVCEYTERGASVVISSRRVSLLQAvaekcnAGKTFVLPLDVLDINTHENALN 101
                  69******************************77777667776888888999999887777776 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   3.5e-05     0.068       4     164 ..      38     203 ..      36     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.5e-05
                  EE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EE.EE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC..........----EEEEEEEGGGT-------------HHHHHH----- CS
    PF08659.5   4 LvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGv.vhaAgvlrdallaemtaedlaavlapKvtGawnLhellad..........epldffvlfSSiagvlgsagqanyaaanaflDalaehrr 164
                   ++G+  g+G++l+ +  erga+ +v+ sr+ +  ++    +ae  + g +  v+++Dv d +  e++l++++++   +  + +   g  + +++ +   e+ +++l+  + +   + ++ ++          ++   ++++SS++g +g++  ++y+a++  l ++ +  r
  MMETSP0890-20130614|32935_1  38 WIIGASSGIGASLVCEYTERGAS-VVISSRRVSLLQA----VAEKCNAG-KTFVLPLDVLDINTHENALNAATKALSGIPEIlILNSGRSQRQTILDAPLETSREILELNFFALISIARIWSKqllsmthgttKQDGQLIITSSLSGKIGTPAGSSYSASKFALHGFFDSFR 203
                  699***************99985.7788888333333....33333334.567899***************99998888777245689999999*9999999999999999999988888888777788888666668999******************9999998887666 PP

>> PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     2e-05     0.039      37      54 ..      33      49 ..      23      65 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
    PF12242.3 37 dGpkkvLviGaSsGyGlA 54
                 +G k+v +iGaSsG+G++
  MMETSP0890-20130614|32935_1 33 SG-KRVWIIGASSGIGAS 49
                 56.9************75 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.049       9     115 ..      31     134 ..      26     151 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
                  ...--EEEEE--.--HHHHHGGG--TTT-E.EEE----HHHHHHHHHHH...T-EE---S-HH..HHHHT-SEEEE-S--SS-.SB-GGG-----....EEEE-----SB- CS
   PF01488.15   9 slkgkkvlviGA.GemarlvakhLlekgvkkiviaNRtaekakeLaeelggeevealpleele..ellaeadvvisatsapep.iiekeaveeakkklgllvDiavPRdve 115
                   ++gk+v +iGA  +++ +++    e+g++ +vi  R  + ++++ae++++ +  +lpl+ l+  ++++  + +  a s  ++ +i ++        +++++D+  P + +
  MMETSP0890-20130614|32935_1  31 AFSGKRVWIIGAsSGIGASLVCEYTERGAS-VVISSRRVSLLQAVAEKCNAGKTFVLPLDVLDinTHENALNAATKALSGIPEiLILNSGRS-Q---RQTILDA--PLETS 134
                  5789*******9535666666666788999.******************7777778888766522666666665555443333122222222.2...2356666..55555 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.9e-05     0.076      33      78 ..      31      76 ..      19      81 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-05
                 .--S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-ST---HHH CS
   PF02882.14 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeilr 78
                   +gk+v ++G+s+ +g +l +  +e++a+V +  ++ + l+++ +
  MMETSP0890-20130614|32935_1 31 AFSGKRVWIIGASSGIGASLVCEYTERGASVVISSRRVSLLQAVAE 76
                 578******************************9999877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 1149.50
//
Query:       MMETSP0890-20130614|32945_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-12   45.7   9.7    5.3e-12   45.7   6.7    1.7  2  PF07200.8  Modifier of rudimentary (Mod(r)) protein
     0.0013   18.3   0.0     0.0038   16.7   0.0    1.8  1  PF05743.8  UEV domain
  ------ inclusion threshold ------
      0.021   14.0   0.0      0.041   13.1   0.0    1.4  1  PF00179.21 Ubiquitin-conjugating enzyme
       0.16   12.0   2.2       0.27   11.3   0.1    2.0  2  PF08347.6  N-terminal CTNNB1 binding
        2.5    8.4   9.2         24    5.2   3.1    3.0  3  PF13600.1  N-terminal domain of unknown function (DUF4140)
        3.9    6.7   6.5        0.5    9.6   1.0    1.9  2  PF05529.7  B-cell receptor-associated protein 31-like


Domain annotation for each model (and alignments):
>> PF07200.8  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.1   4.8e+03      37      37 ..     127     127 ..      96     148 .. 0.51
   2 !   45.7   6.7   2.3e-15   5.3e-12       1     142 [.     167     310 ..     167     312 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.1
                  H CS
    PF07200.8  37 e 37 
                  +
  MMETSP0890-20130614|32945_1 127 Q 127
                  2 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 2.3e-15
                  --S-TTHHHHHHHHH-HHHHH.HGGGGS--TTT---HHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HH----HHHHHHHHHHHHHHHHHHHHHS-S----HHHHHHHHHHHHHHHHHHHH CS
    PF07200.8   1 lkdlsldeLkeLlqdedklee.fvkeldqvqdlneekeellaqnesLaeenlekepqleelkaqlqdkleelkkleekyeekkqkldel.sskyspealkelLqaaakkadeeseelaekflegeidletFlkkykekRtlyhl 142
                  +++++ +e +e+l+de+k+e  f++e++ v++++e +++l+a+ne+ a e l + ++ e + +++++   el+ + e+y+++ ++ d+  +   + +a+ +  ++ a  ad+ se+l  +f + +i+l t lk+yk++R +yh+
  MMETSP0890-20130614|32945_1 167 IDEMTEEEAEEILDDENKFELfFLNEINAVRSMRELRDSLRASNEKAAIEILVRAEKHESSLETVKKTQSELQDALEEYDNLRKQADQAlQPADAASAAIAVHEDIARSADSRSEKLIDDFRDNAINLSTWLKTYKSERLTYHT 310
                  6899*****************8999**************************************************************9956666777777777888899**********************************7 PP

>> PF05743.8  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0038      46     115 ..      40     103 ..      30     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.7e-06
                  ---EE-EEEE--TTTTTS--EEEE-GCC--TSGGGGGB-----B--HHHHS--TTT--HHHHHHHHHH-- CS
    PF05743.8  46 atyniPiliwvpesyPveaPivyvkptksmvikknenvdaqGrvylpyLeeWkreksnlvslvqelaqaf 115
                  ++ +  + i++p+ +P+  P++ ++ + +      + vd+  +++ pyL+eW++ +s+l +lv+++    
  MMETSP0890-20130614|32945_1  40 TNGSKSMRIFLPQRFPQDRPVLQLMGNCT-----LSFVDQYNQINVPYLSEWTS-RSSLAELVSHVLRLL 103
                  566667899************99988877.....5689999************9.999*****9987655 PP

>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.041      49     128 ..      46     124 ..      40     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.8e-05
                  EEEE--TTTTTS--EEEESS--SCTTB-----B-HGGGSTTT--TT--HHHHHHHHHHHHHS-.-TTS-SSHHHHHHHHHT CS
   PF00179.21  49 lkikfpeeYPfkPPkvkfvtkifHPnvdetGeicldiLkeekWspaltlesvLlsiqsllaep.npesplnkeaakllkkn 128
                  ++i +p+ +P + P ++++ ++    vd+  +i +  L+ e W++ ++l + +  ++ ll++     +  n++    + ++
  MMETSP0890-20130614|32945_1  46 MRIFLPQRFPQDRPVLQLMGNCTLSFVDQYNQINVPYLS-E-WTSRSSLAELVSHVLRLLETEeSAGDEKNNDRVITWVDE 124
                  7899***********************************.5.******************655355555555555555444 PP

>> PF08347.6  N-terminal CTNNB1 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.37   8.4e+02      26      58 ..     109     139 ..     103     160 .. 0.62
   2 ?   11.3   0.1   0.00012      0.27      37     185 ..     175     339 ..     163     350 .. 0.53

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.37
    PF08347.6  26 eqeekisenvsaerDLadvKssLvnesEseess 58 
                    +ek+++ v      +++K + ++e E+e+ +
  MMETSP0890-20130614|32945_1 109 AGDEKNNDRVI--TWVDEEKQDIIQEVEEEAPT 139
                  35566533333..35788888888888875544 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
    PF08347.6  37 aerDLadv.KssLvnesEseessss.....dseslqrrkkpkre...esykeksrekleeaskkqkldagllkgtays..gypflml.......skpylsngslsplavssnKvpvvqpshavppltpLltYsnehfspgtppghlpadidskt...GisRpphaadisp 185
                  ae+ L+d+ K +L    E ++ +s      +     r++++k +    +  ek++ +le ++k+q+  ++ l+++     +++ + l       +   + ++ +  +  +s+K+      +a++  t+L tY++e++++ t++g ++a   +k+   G  R +h + i+ 
  MMETSP0890-20130614|32945_1 175 AEEILDDEnKFELFFLNEINAVRSMrelrdS----LRASNEKAAieiLVRAEKHESSLETVKKTQSELQDALEEYDNLrkQADQA-LqpadaasAAIAVHEDIARSADSRSEKLIDDFRDNAINLSTWLKTYKSERLTYHTHSGLASAYRAQKErdiGALRASHVPSIAK 339
                  4445655448888888888776655544331....22222222222122233333334443333333233332222221122211.1122222222333333333334458888777777888889*****************77776666666666999*999988765 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4   3.2e+03      66      90 ..     124     148 ..     115     150 .. 0.75
   2 ?    5.2   3.1     0.011        24      38     102 ..     204     265 ..     196     269 .. 0.68
   3 ?    4.0   0.0     0.026        60      26      50 ..     329     353 ..     319     381 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.4
    PF13600.1  66 daaseelaeleaelraledelarle 90 
                  +++++ ++e+e+e  +++++++r++
  MMETSP0890-20130614|32945_1 124 EEKQDIIQEVEEEAPTVNKKKNRVR 148
                  5677778888888888888888775 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.011
    PF13600.1  38 kSlrvsgegnatvlsvsvrrrdlqekdadaaseelaeleaelraledelarleaekealeariaf 102
                  +Slr+s e+ a++  +  ++++  e + ++ ++ ++el+++l+++++ ++++++ ++ ++a+ a 
  MMETSP0890-20130614|32945_1 204 DSLRASNEK-AAIEILVRAEKH--ESSLETVKKTQSELQDALEEYDNLRKQADQALQPADAASAA 265
                  899999999.666544444443..24567777777777777777777777777777776666554 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.026
    PF13600.1  26 lriegLpasldpkSlrvsgegnatv 50 
                  lr +++p  +++ S+rv g+g++ +
  MMETSP0890-20130614|32945_1 329 LRASHVPSIAKQGSIRVGGTGGGDI 353
                  788999**************98544 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.53   1.2e+03     119     165 ..      95     136 ..      90     151 .. 0.39
   2 ?    9.6   1.0   0.00022       0.5     123     185 ..     196     254 ..     185     258 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.53
    PF05529.7 119 vvtlvselvkleeklealkkqaesatkaakklkeekekklkeevekl 165
                  +v+ v++l+++ee++ + k++         +   e++++  +eve+ 
  MMETSP0890-20130614|32945_1  95 LVSHVLRLLETEESAGDEKNNDRVI-----TWVDEEKQDIIQEVEEE 136
                  3444444444444444444333322.....22333333333333333 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00022
    PF05529.7 123 vselvkleeklealkkqaesatkaakkl..keekekklkeeveklkkeleekekdlealkkqaeg 185
                  v+++ +l+++l+a++++a+       ++  ++ek++++ e v+k + el+++ ++ + l+kqa++
  MMETSP0890-20130614|32945_1 196 VRSMRELRDSLRASNEKAA------IEIlvRAEKHESSLETVKKTQSELQDALEEYDNLRKQADQ 254
                  4444444444444444333......222457789999999**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1190  (0.0870392); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:00.86
# Mc/sec: 1078.36
//
Query:       MMETSP0890-20130614|32948_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   30.9   0.0      3e-07   30.2   0.0    1.5  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.2e-11     3e-07       3      78 ..     102     192 ..     100     263 .. 0.74

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.2e-11
                  B---CT-EEEEEEEEEE............---EEEETTT.....TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCT CS
   PF00254.23   3 kkakegdtVtvhyegkl...........edgtvfdssys.....rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglag 78 
                  +++++gd+V+++y++             e ++vf   y       +  ++ kvG g+++k+++ +l+g++ G+ r+l + pel++++ ++  
  MMETSP0890-20130614|32948_1 102 TAVTKGDVVNMKYRVMRlgkrssdnlsgEASSVFSLGYGedddtTNDVLTAKVGGGELVKAIDSALIGLRPGGIRRLFVVPELGWKKINA-S 192
                  5589*********98885655443332222444544444556668999*************************************98554.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.84
# Mc/sec: 770.26
//
Query:       MMETSP0890-20130614|32943_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-05   23.6   0.0    3.4e-05   23.3   0.0    1.1  1  PF01323.15 DSBA-like thioredoxin domain
    0.00047   20.0   0.0    0.00064   19.6   0.0    1.3  1  PF13462.1  Thioredoxin
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.02   14.5   0.0    1.4  1  PF13192.1  Thioredoxin domain
      0.048   13.7   0.2       0.11   12.5   0.1    1.5  1  PF09320.6  Domain of unknown function (DUF1977)


Domain annotation for each model (and alignments):
>> PF01323.15  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     1e-08   3.4e-05      22     189 ..      22     201 ..       6     205 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1e-08
                  HHCCCC-SEEEEEEE-ST---TTT.....GGG...........STT...HHHHHHHHHHHHHT.......TTCCT.HHHHHHHHHHHHHHHH...GHHHHHHHHHHHHHTST---SSHHHHHHHH.HH----HHHHHHHCTSHHHHHHHHHHHHHHHHTT-----EEEE---EEE--SSSHHHHH CS
   PF01323.15  22 klaarspdvkvvlrpfelagakkasgnvgpse...........lpeklkylledlkrlaeaegip.lrfpkdklk.nstraarlllaagaeg...laekvvrelfealwsegqaitddqelleva.ekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmvfGadrldtla 189
                  k+++   dv++   pf+l+++    +n   s+            + + +    +lk+ ++a gip ++++++  + ++ + + l++ + + +    ae ++ el +  + +g++++d + l+++a + +G+ +ee  + l+ e++k  +r   ++ ++l++  +Pt++++g+r ++Ga +   + 
  MMETSP0890-20130614|32943_1  22 KYQEVARDVTLLRVPFFLEPD--YDENFEESNltrlqrkwggvKEFENQKKRHKLKERGQAVGIPkFKLDRI--AsSTWKSHVLIQHVTRTKglqAAESLYAELNYIHFIRGKKLNDIDMLAQLAfRTVGIPVEET-KNLNFEQIKANIRAALDRCAELNIHSIPTFIINGSRILSGAADAYEFS 201
                  455555677777778888888..4577777777777777777655566777789**********85666666..336666666665555555566789999999999*************99865399***88765.6799*******************************9****99876665 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.9e-07   0.00064     101     160 ..     140     203 ..      61     207 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.9e-07
    PF13462.1 101 ae...algk.deefeacledeklqalveadseeakaagiestPtfiingkk.veenltyeelkal 160
                  ++   ++g   ee  ++l+ e+++a + a   +  + +i+s Ptfiing + ++++ ++ e+++l
  MMETSP0890-20130614|32943_1 140 QLafrTVGIpVEET-KNLNFEQIKANIRAALDRCAELNIHSIPTFIINGSRiLSGAADAYEFSQL 203
                  33444444424554.46999*****************************9956777777777665 PP

>> PF13192.1  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.8e-06      0.02      37      75 ..     167     204 ..     145     205 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.8e-06
    PF13192.1  37 tdfeeiekygVmsvPalvingkvvfsGkvpseeeirell 75 
                    +++++++++ s+P+ +ing+   sG + +  e+ +l+
  MMETSP0890-20130614|32943_1 167 AALDRCAELNIHSIPTFIINGSRILSG-AADAYEFSQLF 204
                  568899*********************.88888887775 PP

>> PF09320.6  Domain of unknown function (DUF1977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.3e-05      0.11      17      54 ..      20      58 ..      13      80 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.3e-05
    PF09320.6 17 ssky.tikrettklkvpYyvkkkfeeeysssklkeleks 54
                  +ky ++ r  t l+vp++++++ +e++++s+l +l ++
  MMETSP0890-20130614|32943_1 20 RKKYqEVARDVTLLRVPFFLEPDYDENFEESNLTRLQRK 58
                 444416899**************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1084.90
//
Query:       MMETSP0890-20130614|32972_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   30.6   0.3    3.5e-07   29.9   0.0    1.5  2  PF08311.7 Mad3/BUB1 homology region 1
  ------ inclusion threshold ------
      0.082   12.4   0.2       0.12   11.9   0.2    1.2  1  PF03906.9 Phage T7 tail fibre protein


Domain annotation for each model (and alignments):
>> PF08311.7  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   5.2e-11   3.5e-07      63     125 ..       2      64 ..       1      65 [. 0.97
   2 ?   -3.3   0.0      0.94   6.4e+03      65      77 ..      83      95 ..      75     102 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 5.2e-11
                  TT-HHHHHHHHH-----S-HHHHHHHHHH------BHHHHHHHHHHHHHTT-HHHHHHHHH-- CS
    PF08311.7  63 knDeRylkiwlkyielfseprelfeylaskgigtklalfYeewaslleskgkfkkAeevlqlG 125
                  + De yl++wl+++   +ep  +f+ l s +ig++++l + + a + e++ ++++A+e+l +G
  MMETSP0890-20130614|32972_1   2 RTDEEYLRLWLELASELDEPSYIFDRLESLKIGENHTLRWVAQAFVAEKAARYAEADEILSRG 64 
                  57999*******************************************************998 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.94
                 -HHHHHHHHH--- CS
    PF08311.7 65 DeRylkiwlkyie 77
                 D R+ + wl+++ 
  MMETSP0890-20130614|32972_1 83 DRRMKRHWLTIAS 95
                 7888888887765 PP

>> PF03906.9  Phage T7 tail fibre protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   1.7e-05      0.12      90     143 ..     159     217 ..     122     226 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
    PF03906.9  90 iLraldLntsqiqtlhvaeEardqtadtigvkadgnldar.....grrivnlanavaai 143
                   L+ +dL+ ++i ++  a E+ d ++d+  ++++ ++        + ri n++n    i
  MMETSP0890-20130614|32972_1 159 NLHRADLEDMTINSIIAAREIDDIFIDNLSIDDQIDNHDLddssvACRIFNDGNEDHSI 217
                  68999**********************99988764432212335788898888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 778.00
//
Query:       MMETSP0890-20130614|32987_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   20.4   0.2    0.00028   19.5   0.0    1.6  2  PF14249.1 Tocopherol cyclase


Domain annotation for each model (and alignments):
>> PF14249.1  Tocopherol cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1      0.33   4.5e+03       3      13 ..      30      40 ..      29      44 .. 0.85
   2 !   19.5   0.0   2.1e-08   0.00028     183     336 .]     173     339 ..     161     339 .. 0.62

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.33
    PF14249.1  3 rFFeGWyfrvt 13
                 r+F+GW  r t
  MMETSP0890-20130614|32987_1 30 RYFNGWCLRFT 40
                 89****99876 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.1e-08
    PF14249.1 183 naPaYseknWGgaFPkkWfWiqcnaFeeepdlaltaaggkRqvlllees..valigihy..qgkfyefvpwn..skls..wevsp.wGkWeiraeneeyeveleattkee...gtvlraptee.glaflCrdtlkgelklelkerkgskgkvilka.ksslaglevGG 336
                  +a  ++e n G++FP+kW W q+  Fe ++ + + ++g+   +l +++   val +     ++++  f +++   kl    +++p  G  +++ +n+++++++e  ++ +   +  l +pt + +++    +++++++ ++++++ +s+   +l++   s a+le GG
  MMETSP0890-20130614|32987_1 173 EALGHAEFNCGKTFPRKWIWSQACDFETANSV-ICVGGSLLPILGTYNTwlVALRTCAGtdENNLLIFRTTDpgCKLIkpPTIDPeQGLVHLSVRNRSHRLDIEIAATPNsffSDLLYVPTPNaAFEKGSTESFEATICVSVSKVLSSNAFDLLDTyLFSGAALEFGG 339
                  5667899*******************998765.567777777777643311555444332345577777666332222113666644777777777777666655444333345667777765466667777777777777777655555544444144566777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.61
# Mc/sec: 1386.74
//
Query:       MMETSP0890-20130614|32996_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   22.0   0.5    0.00021   22.0   0.3    3.1  3  PF14160.1 Centrosome-associated C terminus


Domain annotation for each model (and alignments):
>> PF14160.1  Centrosome-associated C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.7      0.16   2.1e+03      35      83 ..     101     149 ..      64     160 .. 0.61
   2 ?   -1.6   0.1      0.34   4.6e+03      44      44 ..     219     219 ..     163     269 .. 0.57
   3 !   22.0   0.3   1.6e-08   0.00021      37     108 ..     314     384 ..     304     388 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.16
    PF14160.1  35 eeeveelgaenfarassdivslslrsasvvssdsersrdSeetleeees 83 
                  +e+  +l ++  a+ ++   +++ ++a+  + d+ r   S++ ++ee++
  MMETSP0890-20130614|32996_1 101 NETQSKLATQAQAESQAKLLAAESHQAKQRALDALRAAYSAQSQTEEQK 149
                  4444455444444444555555555566666666666666666655554 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.34
    PF14160.1  44 e 44 
                  e
  MMETSP0890-20130614|32996_1 219 E 219
                  1 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 1.6e-08
    PF14160.1  37 eveelgaenfarassdivslslrsasvvssdsersrdSeetleee.eskaervpegvSviERNARvIkWLygc 108
                  + ++l  e++a   + + +++++ ++ + +d e s++S+ + +++ e ++ ++ e+ S iE N RvI+WL + 
  MMETSP0890-20130614|32996_1 314 LAKQL--ERRADDLNKAHQVEIHHKQKALDDLEMSQKSAAEFKQKfELSNAKLNEAQSLIENNNRVIQWLHSQ 384
                  45555..555555566677788888899999999999997765542668899******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2100  (0.153599); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.50u 0.42s 00:00:01.92 Elapsed: 00:00:01.20
# Mc/sec: 1166.23
//
Query:       MMETSP0890-20130614|33004_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00017   20.8   0.0    0.00033   19.9   0.0    1.5  1  PF07653.12 Variant SH3 domain
     0.0013   17.9   0.0     0.0024   17.0   0.0    1.5  1  PF00018.23 SH3 domain


Domain annotation for each model (and alignments):
>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.9e-08   0.00033       2      54 ..     184     236 ..     183     237 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.9e-08
                  EEE-S-B--SS-----B----EEEEE.E-S----BEEEE.-TT---B--HHHHH CS
   PF07653.12   2 vraiedyvaedpeeLslkkGDvikvlgskesdgwweges.gGrvGlfPsslVee 54 
                  +r+i d+ ++   +L + +GD++ ++    +dgw +++   G +G +P++++e+
  MMETSP0890-20130614|33004_1 184 MRVIADFINSEAWHLAVAEGDIVTAT-MVHDDGWTQVTGeDGGRGMVPTTYLEP 236
                  89************************.77888**9999989***********98 PP

>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.6e-07    0.0024       2      48 .]     186     231 ..     185     231 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.6e-07
                  ESS-BE-SSTTS-EB-TT-EEEEEEESSSSEEEEEETTTTB---EEG CS
   PF00018.23   2 AlYDYearesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                  ++ D+  +e+ +L   +GD+++    ++dgW ++   ++  +G++P+
  MMETSP0890-20130614|33004_1 186 VIADFINSEAWHLAVAEGDIVTATMVHDDGWTQVTGEDG-GRGMVPT 231
                  688999*******************************96.6*****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.40s 00:00:01.47 Elapsed: 00:00:00.85
# Mc/sec: 2052.41
//
Query:       MMETSP0890-20130614|33032_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   13.6   0.8       0.14   11.9   0.0    2.1  2  PF07950.6 Protein of unknown function (DUF1691)
      0.077   12.7   0.4       0.17   11.6   0.3    1.6  1  PF09061.5 Stirrup


Domain annotation for each model (and alignments):
>> PF07950.6  Protein of unknown function (DUF1691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.5      0.07   4.8e+02      61      77 ..      67     108 ..       7     116 .. 0.69
   2 ?   11.9   0.0     2e-05      0.14       7      39 ..     109     141 ..     107     151 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.07
    PF07950.6  61 alrlgkr.........................srrkrrkgkr 77 
                  a++l+k+                         ++ +r+k++r
  MMETSP0890-20130614|33032_1  67 AKWLRKKkrehacaidqvqeelphrralaereRQLWRQKEWR 108
                  445555444444444444444444444444444455555555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2e-05
    PF07950.6   7 HltvvrvvPllvdgdssdvvLeyvrhllqrspv 39 
                  H++ v + P  +++ds ++ Leyv hl+qr++ 
  MMETSP0890-20130614|33032_1 109 HIMRVDLRPSNHQKDSDEDQLEYVEHLIQREKS 141
                  99999999**********************983 PP

>> PF09061.5  Stirrup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.5e-05      0.17      13      40 ..      17      44 ..       9      86 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.5e-05
    PF09061.5 13 kewaskyGvefktnGsqtlaiiknekvs 40
                 ++w    G+  +   sq+++iiknek++
  MMETSP0890-20130614|33032_1 17 RAWRQDMGIAHQFRPSQVITIIKNEKLA 44
                 689999*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 617.24
//
Query:       MMETSP0890-20130614|33031_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-09   36.0   0.0    7.3e-09   35.0   0.0    1.5  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
      8e-08   32.0   0.0    2.4e-07   30.5   0.0    1.8  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
     0.0098   15.6   4.4        3.2    7.7   0.6    3.6  3  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.2   1.1        0.9    9.4   0.1    2.8  2  PF13424.1  Tetratricopeptide repeat
      0.047   12.2   0.0      0.093   11.2   0.0    1.4  1  PF07519.6  Tannase and feruloyl esterase
       0.11   12.3   0.7        5.2    6.9   0.0    3.1  2  PF13374.1  Tetratricopeptide repeat
       0.53   10.9  16.8        4.4    8.0   0.2    5.6  6  PF13428.1  Tetratricopeptide repeat
        2.7    8.5   8.7        1.8    9.0   1.9    3.3  3  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   4.3e-12   7.3e-09       1      57 [.     474     532 ..     474     537 .. 0.96

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 4.3e-12
                  EEEESSTTTSSHHHHHHHHCT.CTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHH CS
   PF00076.17   1 lfVgnLppdvteeeLkelFsk.fGpiesiklvrd.etgrskgfafVeFeseedaekAle 57 
                  l+++nL+++vte +L ++  +  Gp+  ++l  d  tg s++ af+eF++ e+ ++Al 
  MMETSP0890-20130614|33031_1 474 LYISNLNENVTETQLFDFWTHqAGPVAIARLLLDkYTGLSRCAAFIEFQQLESIQRALT 532
                  8******************999***********************************96 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.4e-10   2.4e-07       1      60 [.     474     535 ..     474     539 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.4e-10
    PF14259.1   1 lyvrglppsvteedlreffsp.ygkvegvriprnkd.grgrgfAfvefeseedAqkalkkln 60 
                  ly+++l+++vte++l++f    +g+v   r+ ++k  g +r+ Af+ef   e++q+al+ ++
  MMETSP0890-20130614|33031_1 474 LYISNLNENVTETQLFDFWTHqAGPVAIARLLLDKYtGLSRCAAFIEFQQLESIQRALTVQD 535
                  79***************976626************99*********************9766 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0034       5.9      13      31 ..      54      72 ..      51      75 .. 0.90
   2 ?   -3.8   0.0         8   1.4e+04      25      33 ..     230     238 ..     227     238 .. 0.82
   3 !    7.7   0.6    0.0019       3.2       7      25 ..     345     363 ..     343     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0034
                 HTT-HHHHHHHHHHHHHH- CS
   PF07719.12 13 klgdyeeAleafekAleld 31
                 ++g+ e+A++ + +Ale++
  MMETSP0890-20130614|33031_1 54 ENGNIEKARQILHQALEIC 72
                 79***************97 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 8
                  HHHHHH-TT CS
   PF07719.12  25 ekAleldPn 33 
                  ++Al+ +P+
  MMETSP0890-20130614|33031_1 230 RRALRCCPD 238
                  789999986 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0019
                  HHHHHHHTT-HHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafe 25 
                   G+a++++gd+e+A+++f+
  MMETSP0890-20130614|33031_1 345 AGCAAAAAGDFEQARAFFR 363
                  699**************98 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00053       0.9      17      49 ..      54      86 ..      46      88 .. 0.80
   2 ?    3.4   0.1     0.038        65      12      30 ..     345     364 ..     329     376 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00053
    PF13424.1 17 rlgdydeAlelyekalellrelgddhpdtaral 49
                 + g+ ++A++++ +ale++ + g +  d aral
  MMETSP0890-20130614|33031_1 54 ENGNIEKARQILHQALEICGRCGSRLWDAARAL 86
                 689999999999999999988888888877776 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.038
    PF13424.1  12 alvlr.rlgdydeAlelyek 30 
                  a++   + gd+++A+++++ 
  MMETSP0890-20130614|33031_1 345 AGCAAaAAGDFEQARAFFRA 364
                  54444488999999998875 PP

>> PF07519.6  Tannase and feruloyl esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.5e-05     0.093     189     259 ..     419     489 ..     401     506 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.5e-05
    PF07519.6 189 qCdalDgradglvsdpelCkldfavesllCeadksngdscltaaqiavvaaiyeglkvskGerlylgleia 259
                   Cd  D  +  +v+    C++d+++e++  + +k ++ + ++++ +a +++i+++l+ s+ ++     + +
  MMETSP0890-20130614|33031_1 419 ICDREDSDTMNVVAAKTTCNTDSEQEVPDVAKKKKKKRKPISQEAAANAERIHRTLYISNLNENVTETQLF 489
                  5***********************99999876668999*****************9987765555555555 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0031       5.2      14      32 ..      54      72 ..      52      77 .. 0.88
   2 ?    2.0   0.1      0.11   1.8e+02      11      27 ..     348     364 ..     345     372 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0031
    PF13374.1 14 argryeeAlaleeealair 32
                 + g+ e+A++++++al+i+
  MMETSP0890-20130614|33031_1 54 ENGNIEKARQILHQALEIC 72
                 5799*************98 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.11
    PF13374.1  11 alrargryeeAlaleee 27 
                  a +a g++e+A+a++++
  MMETSP0890-20130614|33031_1 348 AAAAAGDFEQARAFFRA 364
                  66789********9987 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0026       4.4       3      32 ..      44      73 ..      42      87 .. 0.78
   2 ?   -1.7   0.0       3.5   5.9e+03      19      40 ..     111     132 ..     109     136 .. 0.80
   3 ?   -0.6   0.4       1.6   2.7e+03      32      44 .]     161     173 ..     130     173 .. 0.59
   4 ?    5.2   0.0     0.021        36      21      43 ..     226     248 ..     220     249 .. 0.89
   5 ?    4.6   0.5     0.034        58      10      26 ..     348     364 ..     341     372 .. 0.85
   6 ?   -2.2   0.0       5.1   8.7e+03       9      25 ..     370     387 ..     362     395 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0026
    PF13428.1  3 allalarallalGdpdeAiallrralalaP 32
                 ++l + + ++++G+ ++A++ l +al+ + 
  MMETSP0890-20130614|33031_1 44 LWLIRIAKQAENGNIEKARQILHQALEICG 73
                 56667777899***************9764 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.5
    PF13428.1  19 eAiallrralalaPddaealll 40 
                   A+++l ++ +++  da++++ 
  MMETSP0890-20130614|33031_1 111 NAEKYLAEYESQYGIDAQVRRW 132
                  6999999999999988888875 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 1.6
    PF13428.1  32 PddaealllLarl 44 
                      ea++++a++
  MMETSP0890-20130614|33031_1 161 NALTEAWIQYAQA 173
                  2335899999985 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.021
    PF13428.1  21 iallrralalaPddaealllLar 43 
                  i+ +rral+ +Pd+ +++llL r
  MMETSP0890-20130614|33031_1 226 INIARRALRCCPDEIRFRLLLLR 248
                  6789**************99976 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.034
    PF13428.1  10 allalGdpdeAiallrr 26 
                  a +a+Gd+++A+a +r+
  MMETSP0890-20130614|33031_1 348 AAAAAGDFEQARAFFRA 364
                  5789**********997 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 5.1
    PF13428.1   9 rallalGdpde.Aiallr 25 
                  + l++ +++++ A+++l+
  MMETSP0890-20130614|33031_1 370 HELRNFNEFEKsARQWLD 387
                  556777888752666665 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.36   6.2e+02      12      26 .]      53      67 ..      52      67 .. 0.87
   2 ?   -3.9   0.2         8   1.4e+04      18      23 ..      81      86 ..      80      86 .. 0.65
   3 ?    9.0   1.9    0.0011       1.8      10      25 ..     348     363 ..     345     364 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.36
                 HH-------HHHHHT CS
    PF07721.9 12 lalGdldeAraller 26
                 ++ G+ + Ar++l++
  MMETSP0890-20130614|33031_1 53 AENGNIEKARQILHQ 67
                 778*********986 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 8
                 ---HHH CS
    PF07721.9 18 deAral 23
                 d+Aral
  MMETSP0890-20130614|33031_1 81 DAARAL 86
                 777775 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0011
                  HHHH-------HHHHH CS
    PF07721.9  10 allalGdldeAralle 25 
                  a++a+Gd+++Ara ++
  MMETSP0890-20130614|33031_1 348 AAAAAGDFEQARAFFR 363
                  79***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       916  (0.0669982); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:01.02
# Mc/sec: 1463.66
//
Query:       MMETSP0890-20130614|33058_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.5   0.2    2.1e-06   27.6   0.1    1.6  1  PF13857.1  Ankyrin repeats (many copies)
    3.2e-06   26.5   3.7    3.7e-05   23.1   0.2    2.2  2  PF00023.25 Ankyrin repeat
    4.9e-06   26.1   0.8    0.00014   21.6   0.0    2.2  2  PF13606.1  Ankyrin repeat
    9.8e-06   25.7   0.4    1.2e-05   25.4   0.3    1.1  1  PF12796.2  Ankyrin repeats (3 copies)
      0.005   17.2   0.2     0.0065   16.8   0.1    1.2  1  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   7.5e-10   2.1e-06       2      36 ..      31      66 ..      30      69 .] 0.89

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 7.5e-10
    PF13857.1  2 lehgpadvnatdeggn.tpLhlAakggalevvrlLl 36
                 l++g+++ ++td++g+ t+Lh+Aa++g+++vv  Ll
  MMETSP0890-20130614|33058_1 31 LAAGALVDFRTDQFGRaTVLHWAAYRGHASVVSALL 66
                 56777888999999999******************9 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.2    0.0093        26       8      33 .]      13      42 ..       5      42 .. 0.88
   2 !   23.1   0.2   1.4e-08   3.7e-05       4      23 ..      48      67 ..      47      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0093
                 HHHHTT....HHHHHHHHHHTTSSTTHBHT CS
   PF00023.25  8 lAalrg....nlevvklLlsqGAdlnaqdd 33
                 lAa++     n++ v   l +GA ++ ++d
  MMETSP0890-20130614|33058_1 13 LAAECQaskaNADAVAAALAAGALVDFRTD 42
                 677777888899999999*******99997 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.4e-08
                 BHHHHHHHTTHHHHHHHHHH CS
   PF00023.25  4 TPLHlAalrgnlevvklLls 23
                 T LH+Aa+rg+++vv+ Ll 
  MMETSP0890-20130614|33058_1 48 TVLHWAAYRGHASVVSALLA 67
                 99****************96 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.043   1.2e+02      10      28 ..      19      37 ..      12      39 .. 0.75
   2 !   21.6   0.0   5.1e-08   0.00014       4      22 ..      48      66 ..      44      69 .] 0.90

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.043
    PF13606.1 10 asngrielveaLlengadi 28
                 as+ + ++v a l +ga +
  MMETSP0890-20130614|33058_1 19 ASKANADAVAAALAAGALV 37
                 446699*****99999976 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 5.1e-08
    PF13606.1  4 TpLhlAasngrielveaLl 22
                 T+Lh+Aa++g+ ++v+aLl
  MMETSP0890-20130614|33058_1 48 TVLHWAAYRGHASVVSALL 66
                 9*****************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.3   4.2e-09   1.2e-05       4      47 ..      18      67 ..      12      69 .] 0.83

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.2e-09
    PF12796.2  4 AaengnlelvklLlekgadvdl......getpLhlAaeagnleivklLle 47
                  a++ n+++v   l++ga vd+      + t+Lh+Aa +g+  +v++Ll+
  MMETSP0890-20130614|33058_1 18 QASKANADAVAAALAAGALVDFrtdqfgRATVLHWAAYRGHASVVSALLA 67
                 57788999999999999999988888877779999999999999999986 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.4e-06    0.0065       8      54 .]      18      66 ..      11      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.4e-06
    PF13637.1  8 aaisgrlelvklLlekgidinrt.desGn.taLhiAalrgnieilklLl 54
                 +a++ + ++v+  l+ g+ ++ + d +G+ t Lh Aa+rg+ +++  Ll
  MMETSP0890-20130614|33058_1 18 QASKANADAVAAALAAGALVDFRtDQFGRaTVLHWAAYRGHASVVSALL 66
                 5668888999999999988887768888889**************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.71
# Mc/sec: 232.89
//
Query:       MMETSP0890-20130614|33056_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1039  (0.0759947); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.20s 00:00:01.04 Elapsed: 00:00:01.40
# Mc/sec: 895.21
//
Query:       MMETSP0890-20130614|33073_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   23.3   0.0    4.4e-05   22.8   0.0    1.3  1  PF10294.4 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.2e-09   4.4e-05      13      58 ..      73     112 .]      61     112 .] 0.85

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.2e-09
    PF10294.4  13 tgnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtG 58 
                   +n+ g  +W+aa +++ y+++      +++++++++++ELG+G G
  MMETSP0890-20130614|33073_1  73 RQNELGLRLWPAAEMVAAYVAT------ENEKFENVNIIELGAGLG 112
                  45699****************9......57899***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.57
# Mc/sec: 462.74
//
Query:       MMETSP0890-20130614|33060_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-18   65.0   0.0    3.3e-17   62.5   0.0    2.2  2  PF00488.16 MutS domain V


Domain annotation for each model (and alignments):
>> PF00488.16  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       0.3   4.1e+03     198     232 ..      86     120 ..      79     123 .. 0.80
   2 !   62.5   0.0   2.4e-21   3.3e-17       9     227 ..     252     460 ..     244     466 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.3
                  EE----S-----HHHHHTT--HHHHHHHHHHHHHH CS
   PF00488.16 198 vkegaaeksyGikvaelaglPesvveeakevlkel 232
                  v++     + Gi+ ++l++  +s ++ea++++++ 
  MMETSP0890-20130614|33060_1  86 VRDAFEIDNNGIRSTRLSNTCSSALQEARNQVRRA 120
                  66666677889999999999999999999987765 PP

  == domain 2    score: 62.5 bits;  conditional E-value: 2.4e-21
                  ..-EEEEEE--CCCCCC.TTS----EEEEECTTSS.EEEEE--TT---HHHHHHHHHHHHHHC----BSSSEEEE.E--SEEEEE-----S--.----CHHHHHHHHHHHHCC--TTSEEEEE-------ST---HHHHHHHHHHHHC.T-EEEEE-S-CCCCCHHHHSTTEEEEEEEEEEESSEEEEEEEEE----S-----HHHHHTT--HHHHHHHHH CS
   PF00488.16   9 ekelkieegrHpvveavleeeefvaNdveleeeksrlllitGpNmgGKStylrqvalivllaqiGsfvpaesaei.sivdkiftRigasDdla.kgeStFmvEmletasiLknateksLvilDElGRGtstydGlaialavlehllekvkaktlfatHyheltklaekleevknlhlavkeededlvflykvkegaaeksyGikvaelaglPesvveeake 227
                  ++ +   e+rHpv+     +++ ++ d++l   +  + ++ G+N gGK  yl   +l++ll +    +pa++ +i + + +i++ +  + +l+  ++St+   +   ++ L+  tek+L+++DElG Gt  ++G ai +a+le ll+k++a +  atH+ ++ + a + +e   ++l   e d    f  +   +a +++  ++ ae  glP++v++ a+e
  MMETSP0890-20130614|33060_1 252 TDGILALEARHPVLCLD--NTQVTPVDLDLAPGR--CAILQGANGGGKTQYLGTLGLLALLVKAAIPIPAAQGSIvTFFPTILADVENAAKLTfPNASTYEGFLYFASYALN--TEKALILFDELGSGTDSAEGGAIGVAILESLLQKQNA-VCAATHHPSVKAQAISRPE--AYELWSFEGD---SFRPSRGASAIRSAKALDAAERCGLPQDVINVANE 460
                  456666789****9866..7999999*9999998..99*********************************999835689******98887762689999999999999997..799******************************8665.6689**9888766544433..3333222222...23333344444455556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1122  (0.0820655); expected 273.4 (0.02)
Passed bias filter:                      528  (0.0386191); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.45s 00:00:01.57 Elapsed: 00:00:00.87
# Mc/sec: 1837.21
//
Query:       MMETSP0890-20130614|33076_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-05   22.5   0.0     0.0002   20.9   0.0    1.9  2  PF13679.1  Methyltransferase domain
    0.00089   18.3   0.0     0.0014   17.7   0.0    1.3  1  PF00891.13 O-methyltransferase
  ------ inclusion threshold ------
       0.03   13.5   0.0      0.063   12.5   0.0    1.4  1  PF05175.9  Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.4   6.3e+03      11      34 ..       7      29 ..       4      59 .. 0.70
   2 !   20.9   0.0   4.5e-08    0.0002       6     134 ..      95     214 ..      80     216 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.4
    PF13679.1 11 elveklvkeaakeegsltvvDvGa 34
                 ++v++lv + ++e ++++++Dv +
  MMETSP0890-20130614|33076_1  7 SIVSALVVK-SSELEENELIDVVC 29
                 566666666.46667778888766 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4.5e-08
    PF13679.1   6 veklaelveklvkeaakeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatpkesvdvviaLHaCdtltdealrlalekeakllvlvpCC 134
                   + +ae+++k++    +++  ++v+Dv+ G+g L+ +l++ + +  +++ +  +   +++ e+  +++  ++ ++ + ++f     +  +  ++   +iaLH+ d++t+ a+ +a +++  +  +vpCC
  MMETSP0890-20130614|33076_1  95 AQVFAEFLAKTF----DHTILERVIDVAGGRGDLSMALKQRIPRC-KPIVIEPLARLPSVHEEEATIDVSIQ-TIRTYFEFPLR-GEAIKAMTNATAIIALHP-DEATEAAVCVAAQRRLPFA-VVPCC 214
                  444555555544....558899******************44444.48888888888999999999999999.55455665544.455667899999*****9.**************99986.69*** PP

>> PF00891.13  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.2e-07    0.0014      81     131 ..      92     141 ..      37     159 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.2e-07
                  CCCTTTTT.HHHHHCS-GTT-SEEEE--------HHHHHHHSTT-EEEEE- CS
   PF00891.13  81 aedsrlvakkilekakdfeglsslvDVGGGtGalaaaivsayPhikgivfD 131
                   e ++++a + l+k +d + l++++DV+GG+G l  a  ++ P +k iv++
  MMETSP0890-20130614|33076_1  92 VERAQVFA-EFLAKTFDHTILERVIDVAGGRGDLSMALKQRIPRCKPIVIE 141
                  45556666.9999*********************************99986 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05     0.063      20      57 ..      99     136 ..      93     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
                  -HHHHHHS-TT------B-------HHHHHHHH-TT-- CS
    PF05175.9  20 selLletlpkklagkvlDlGcGaGvlgaalakespele 57 
                  +e+L++t+++++ ++v+D++ G G l++al+++ p+++
  MMETSP0890-20130614|33076_1  99 AEFLAKTFDHTILERVIDVAGGRGDLSMALKQRIPRCK 136
                  589********999*******************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.75
# Mc/sec: 1476.16
//
Query:       MMETSP0890-20130614|33072_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-20   70.7  21.4    1.3e-19   70.1  14.8    1.2  1  PF01061.19 ABC-2 type transporter
    6.1e-13   49.0   0.0    1.1e-12   48.2   0.0    1.4  1  PF00005.22 ABC transporter
    2.4e-06   27.6   0.0     0.0011   18.8   0.0    2.3  1  PF13304.1  AAA domain
    0.00011   21.2   0.0    0.00017   20.6   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
    0.00028   20.6   0.0    0.00072   19.3   0.0    1.7  1  PF13671.1  AAA domain
      0.001   18.4   0.2     0.0024   17.2   0.1    1.6  1  PF13555.1  P-loop containing region of AAA domain
     0.0012   19.5   0.0     0.0084   16.7   0.0    2.3  2  PF13207.1  AAA domain
      0.004   16.3   0.0      0.009   15.1   0.0    1.6  1  PF12846.2  AAA-like domain
     0.0041   16.4   0.0      0.042   13.1   0.0    2.2  2  PF13481.1  AAA domain
      0.009   15.5   0.0      0.019   14.4   0.0    1.5  1  PF01583.15 Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.017   15.3   0.3      0.067   13.4   0.0    2.1  2  PF13191.1  AAA ATPase domain
       0.02   14.9   0.0      0.046   13.7   0.0    1.7  1  PF13401.1  AAA domain
      0.043   12.8   0.0      0.082   11.8   0.0    1.4  1  PF06414.7  Zeta toxin
      0.043   13.0   0.0      0.083   12.1   0.0    1.5  1  PF11261.3  Interferon regulatory factor 2-binding protein zinc finger
       0.05   13.7   0.0        0.1   12.8   0.0    1.6  1  PF13238.1  AAA domain
      0.083   12.7   0.0       0.25   11.2   0.0    1.8  1  PF01926.18 50S ribosome-binding GTPase
      0.095   11.7   0.0        3.5    6.6   0.0    2.1  1  PF02463.14 RecF/RecN/SMC N terminal domain
       0.15   10.9   0.0        2.7    6.8   0.0    2.0  2  PF13175.1  AAA ATPase domain
        0.2   11.8   0.0       0.36   11.0   0.0    1.4  1  PF13476.1  AAA domain


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1  14.8   1.8e-22   1.3e-19      25     207 ..     346     528 ..     323     530 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 1.8e-22
   PF01061.19  25 kliqpllmalvfgtvfgnlgnssgglqr..pgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldls...fflflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsm.pkwlqwiyylnPltyavealrsn 207
                   ++  l+ a+++g+ f n g     +++  + ++ +s++  ++++l ++++++++er +++re  +++ys  a+  a++ +++++s +++i +++i+y l+gl++     + ++l+ ll a ++s ++l+++ +++++   +q+a  l   ++++sG+++ ++ m p +l  i y  P+tya+e+ + +
  MMETSP0890-20130614|33072_1 346 IFFPSLIAATLVGLSFRNFG-----VNFflAAAVLMSLIAHGMIILNGTVLNMPSERDLIVREYHNGTYSIAAYWAARASLQILLSSFIGIPMMCISYTLIGLTRRpvvILHYYLASLLNASIFSIMALFMGLVNKTALASAQVAEPLGGAMVIFSGALVTKHFMkP-FLMPIFYAFPITYALEIALTA 528
                  467779999********654.....2223499999999999999**************************************************************874499*****************************************************88.888999**********98765 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.5e-15   1.1e-12       1     118 []      24     152 ..      24     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 1.5e-15
                  HHHHHHHTTSS---..---EEE-..--BGGGB-HHHHH.EE.EE-------.--BHHHHHH----S--........-HHHHHHHHHH---HHHH--...----.------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx...xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkpt..egeievdndrkdlesdkleklr.ig.yipqdpllfpeltvrenldmakeekk........tdkrieevlekvgldelldk...srvs.tLSgGqkqrvalArallkkpklllLDEPtn 118
                  STLl+ll+g l  +  ege+ vd+++     +k++ +r ig  +pqd+ l   ltvr++l +  e           + +r+e+v++k+gl +++d+   ++ + ++SgGqk+r+++ + ll + +++l DEPt+
  MMETSP0890-20130614|33072_1  24 STLLNLLAGRLPTQdlEGEVFVDGQE-----TKAHLFReIGtLTPQDEILPAVLTVRQTLIYTAELRSprhwsraqRLARVENVIQKLGLAAKADNiigTPLKvGISGGQKKRLSIGMDLLAELPVMLVDEPTT 152
                  9**********977789999999423.....45555667651679999999*********988887669***************************8874444379***************************6 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-06    0.0011       2     295 ..      13     180 ..      12     184 .. 0.58

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.5e-06
    PF13304.1   2 nviiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrli.ellkelsnggsQlifT 295
                  +   Gp g+GKS+lL  l++      +  +   + ++ +++   f+ +++   ++  +   l +++  +y  ++++ +                                                                                     +  ++ ++++ +    l   +d++i   ++++                                         S G+k+ l++ + ll  l   +v l+DEp +gL+  +   ++ +l++  s+++ ++i+T
  MMETSP0890-20130614|33072_1  13 TMMAGPSGAGKSTLLNLLAGR--LPTQDLEGEVFVDGQETKAHLFREIGTLTPQDEILPAVLTVRQTLIYTAELRSPRHWS----------------------------------------------------------------------------------RAQRLARVENVIQKLGLAAKADNIIGTPLKVG----------------------------------------ISGGQKKRLSIGMDLLAEL---PVMLVDEPTTGLDANAAIVVVrTLIRLASDQRRTIICT 180
                  566788888888888888664..3333333333333333333333333333333333333333334444444444444444..................................................................................44444444444433333333333333333332........................................2******************...*****************999977779999999999998 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.4e-07   0.00017      36      59 ..      11      34 ..       2     101 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.4e-07
                 SBEEEE-------HHHHHHH---- CS
   PF03193.11 36 ktsvlvGqSGvGKSsLinallpel 59
                 ++++++G+SG+GKS+L+n l+++l
  MMETSP0890-20130614|33072_1 11 SITMMAGPSGAGKSTLLNLLAGRL 34
                 899*****************9876 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-06   0.00072       2      94 ..      13      99 ..      12     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1e-06
    PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakr 94
                 +++ G++G+GKstl++ l+      rl + +l  ++f ++q++k+   r    l  +  +++  +l+ +++ i  a ++s+++++r  +la+ 
  MMETSP0890-20130614|33072_1 13 TMMAGPSGAGKSTLLNLLAG-----RLPTQDLEGEVFVDGQETKAHLFREIGTLTPQ-DEILPAVLTVRQTLIYTAELRSPRHWSRAQRLARV 99
                 79**************9994.....56667788888998888888777755544444.68888889999999999999999999999998874 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.3e-06    0.0024      18      40 ..       6      27 ..       1      32 [. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.3e-06
    PF13555.1 18 eidpkgkntlltGasGsGKSTll 40
                 +++  g+ t+++G+sG+GKSTll
  MMETSP0890-20130614|33072_1  6 RFE-GGSITMMAGPSGAGKSTLL 27
                 554.5679**************8 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-05    0.0084       5      26 ..      16      35 ..      13     103 .. 0.81
   2 ?   -0.6   0.0       2.8     2e+03      42      77 ..     309     340 ..     256     363 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-05
                 B--TT---HHHHHHHHHHSTEE CS
    PF13207.1  5 tGppGsGKsTlakeLaerlglp 26
                  Gp+G+GKsTl ++La rl  p
  MMETSP0890-20130614|33072_1 16 AGPSGAGKSTLLNLLAGRL--P 35
                 6***************996..3 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.8
                  -----B--SSGGGB-HHHHHHHH....H..HHHHHH CS
    PF13207.1  42 lddgereskdadadllaaildglaakkdtlswvidg 77 
                  ++++ r+++++ + ++a+il +      t+++vid 
  MMETSP0890-20130614|33072_1 309 TPKTRRTWYNISQSRQAWILFRR----CTYIFVIDQ 340
                  22444566666666667777766....667777776 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.009       3      28 ..      12      37 ..      10      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-05
    PF12846.2  3 ntlilGppGsGKSvllkklvlqllar 28
                  t++ Gp+G+GKS+ll+ l+ +l  +
  MMETSP0890-20130614|33072_1 12 ITMMAGPSGAGKSTLLNLLAGRLPTQ 37
                 5899***************9988665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.8e-05     0.042      32      57 ..       9      34 ..       3     104 .. 0.87
   2 ?    0.7   0.0      0.36   2.6e+02     163     189 ..     157     183 ..     151     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.8e-05
    PF13481.1 32 rgsltllaGapgtGKStlalqlaaav 57
                  gs+t+ aG++g+GKStl+  la+++
  MMETSP0890-20130614|33072_1  9 GGSITMMAGPSGAGKSTLLNLLAGRL 34
                 699***************98777765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.36
    PF13481.1 163 sdvgaviaalerlakrtgaavllvhHt 189
                  +++  v++ l rla   + ++++++H 
  MMETSP0890-20130614|33072_1 157 NAAIVVVRTLIRLASDQRRTIICTIHQ 183
                  3445899*******************6 PP

>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.7e-05     0.019       3      51 ..      11      60 ..       9      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.7e-05
                 -EEEEE-ETT---HHHHHHHHHHHHCTS--.EEEE---TTT----TT--- CS
   PF01583.15  3 vvvwltGlsgsGKstiavalekkLvekgik.vylLdGdnvRhgLnkdLgf 51
                  + +++G sg+GKst+ + l+ +L ++  +  + +dG++ + +L +++g 
  MMETSP0890-20130614|33072_1 11 SITMMAGPSGAGKSTLLNLLAGRLPTQDLEgEVFVDGQETKAHLFREIGT 60
                 567899*********************96615568**********99985 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.2e-05     0.067      23      66 ..      10      62 ..       4     187 .. 0.72
   2 ?   -1.1   0.0       2.7     2e+03      74     121 ..     257     298 ..     236     354 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.2e-05
    PF13191.1 23 splllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.........l 66
                 +++    GpsG GKS+Ll+ la ++  ++l+ +  +  q +           +
  MMETSP0890-20130614|33072_1 10 GSITMMAGPSGAGKSTLLNLLAGRLPTQDLEGEVFVDGQETKAhlfreigtlT 62
                 4466778*************888877777666555555444445444443332 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.7
    PF13191.1  74 alrellrqlltelaaelggwreallaalgalipelegiiglqalvall 121
                   l +l + l +e++a l++   + ++a+++      +  gl+al+  l
  MMETSP0890-20130614|33072_1 257 MLAALGKDLDQEEDAVLEENVIFDEEAEET------HFLGLSALLYRL 298
                  345555555555555555555444444444......333333333333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.5e-05     0.046       3      37 ..       9      51 ..       6     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.5e-05
    PF13401.1  3 sagilvvtGesGvGKTtllrrlarqldeeaeaae........k 37
                 + +i++  G+sG+GK+tll+ la +l+ +    e        k
  MMETSP0890-20130614|33072_1  9 GGSITMMAGPSGAGKSTLLNLLAGRLPTQDLEGEvfvdgqetK 51
                 67899999***************99987655555555554441 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011     0.082      19      41 ..      13      35 ..      10      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
    PF06414.7 19 vllgGqpGAGKtslaellleela 41
                  +++G+ GAGK++l++ll ++l 
  MMETSP0890-20130614|33072_1 13 TMMAGPSGAGKSTLLNLLAGRLP 35
                 57***************999885 PP

>> PF11261.3  Interferon regulatory factor 2-binding protein zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012     0.083       6      42 ..     176     216 ..     171     222 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
    PF11261.3   6 CyLCDLPrmPWamindfseav..CRGCvnyeG..adrielv 42 
                    +C + + PW+m+ +f   v   RG + y+G  ad  +++
  MMETSP0890-20130614|33072_1 176 TIICTIHQPPWTMVLQFDQFVllARGSIVYDGlpADLPNFL 216
                  5689999**********9987557*******9555555555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00014       0.1       4      23 ..      16      48 ..      14     116 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00014
    PF13238.1  4 tGtpGvGKtTlakeLaerl.............g 23
                 +G++G+GK+Tl+++La rl              
  MMETSP0890-20130614|33072_1 16 AGPSGAGKSTLLNLLAGRLptqdlegevfvdgQ 48
                 7***************99988888855555553 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00034      0.25       4      27 ..      15      36 ..      13      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00034
                 EE--TT---HHHHHHHHCSTCTEE CS
   PF01926.18  4 ivGrpNvGKStLinaLtgekaakv 27
                 + G + +GKStL+n L g  +  +
  MMETSP0890-20130614|33072_1 15 MAGPSGAGKSTLLNLLAG--RLPT 36
                 78**************96..3344 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0048       3.5     135     199 ..     111     183 ..       2     199 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0048
                  T...........G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHH.HHHHHH-BTBEEEEE-S-H CS
                  x...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
   PF02463.14 135 e...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskva.ellkeksknaQfivislre 199
                  +            +SgG+k+ +++     +      p++l+De    LD++    v+ +l++ +s++   i+ ++++
  MMETSP0890-20130614|33072_1 111 KadniigtplkvGISGGQKKRLSIG----MDLLAELPVMLVDEPTTGLDANAAIVVVrTLIRLASDQRRTIICTIHQ 183
                  2555555555555788888765554....445677888888888888887766555415666777777777777765 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11        82      23      42 ..      11      30 ..       1      55 [. 0.78
   2 ?    6.8   0.0    0.0037       2.7     372     412 ..     144     184 ..     127     185 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.11
    PF13175.1 23 slnviiGeNgsGKttILeal 42
                 s+++  G +g+GK+t+L  l
  MMETSP0890-20130614|33072_1 11 SITMMAGPSGAGKSTLLNLL 30
                 89999************987 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0037
    PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiitTHsp 412
                  + l DEP + l++++   + + L+ la+++  +ii t H p
  MMETSP0890-20130614|33072_1 144 VMLVDEPTTGLDANAAIVVVRTLIRLASDQRRTIICTIHQP 184
                  8899***********************************98 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00051      0.36      13      38 ..       3      29 ..       1      34 [. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00051
    PF13476.1 13 qeidFskg.ltlItGpNGsGKTTildA 38
                 + + F+ g +t   Gp G+GK+T+l+ 
  MMETSP0890-20130614|33072_1  3 VSLRFEGGsITMMAGPSGAGKSTLLNL 29
                 5677755449999***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.95
# Mc/sec: 1425.20
//
Query:       MMETSP0890-20130614|33086_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   43.6   0.0      2e-11   43.4   0.0    1.0  1  PF13593.1 SBF-like CPA transporter family (DUF4137)
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.11   12.1   0.0    1.1  1  PF13272.1 Protein of unknown function (DUF4063)


Domain annotation for each model (and alignments):
>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     3e-15     2e-11     263     313 .]       2      52 ..       1      52 [. 0.96

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3e-15
    PF13593.1 263 cgsaKslalgvplasvlfgsnpqlgllllPlllyhliqlvvasvLvsrlar 313
                  ++++K+ algv+++++lf +++++g  +lP+++yh +q++va+ Lvs l+r
  MMETSP0890-20130614|33086_1   2 ICPQKTEALGVTIVTSLFDDDDDIGPHTLPIVIYHCVQMLVAASLVSTLKR 52 
                  79*********************************************9986 PP

>> PF13272.1  Protein of unknown function (DUF4063)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05      0.11      20      62 ..      25      67 ..      12      87 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
    PF13272.1 20 vspqqlpvvlYklslvslaavlgywlDrllFpyarPgsylvke 62
                 + p+ lp+v+Y    +++aa l   l r +   + P+  l+ +
  MMETSP0890-20130614|33086_1 25 IGPHTLPIVIYHCVQMLVAASLVSTLKRFVDARTFPKPLLEDN 67
                 679******************9999999887777777777444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 352.41
//
Query:       MMETSP0890-20130614|33097_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-14   51.4   0.2    2.8e-13   49.0   0.0    2.1  2  PF01423.17 LSM domain


Domain annotation for each model (and alignments):
>> PF01423.17  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0     2e-17   2.8e-13       3      66 ..       4      66 ..       2      68 .. 0.94
   2 ?    0.2   0.1     0.033   4.6e+02      40      51 ..      77     100 ..      72     141 .. 0.51

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2e-17
                 HHHHTTS-EEEEETTTEEEE-EEEEEETTCEEEEEEEEEEE...EEE..EE.EEEEEGGGEEEE CS
   PF01423.17  3 lqelinkrVtvelkngreveGtLkafDkfmNlvLrdvtetwkrkkknkrelgqiliRGenivlv 66
                 l   +++++++elkng ++ G+L++ D +mN+ L+dv+ t ++++    el++++iRG++i ++
  MMETSP0890-20130614|33097_1  4 LSAAKGNPMLIELKNGDTYNGRLVSSDSWMNINLQDVICTSREGDRF-WELKECYIRGSAIKYL 66
                 6677899*********************************9999999.*************997 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.033
                  EEEE...EEE.............. CS
   PF01423.17  40 tetwkrkkknk............r 51 
                  +e   +kkk+k             
  MMETSP0890-20130614|33097_1  77 QEDEAQKKKEKvlvneeelilveV 100
                  555555555433333333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 601.05
//
Query:       MMETSP0890-20130614|33089_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
         10    5.5  14.3        1.2    8.5   2.2    2.5  2  PF04404.7 ERF superfamily


Domain annotation for each model (and alignments):
>> PF04404.7  ERF superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.4    0.0077   1.1e+02     118     157 ..      89     128 ..      85     131 .. 0.79
   2 ?    8.5   2.2   8.9e-05       1.2     115     141 ..     257     291 ..     255     306 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0077
    PF04404.7 118 gIasedDdDaanpteneqsqrskqksntqaqqelkdqkqk 157
                   I+++dDd+ +   +++++q + ++++  +q+e++d   k
  MMETSP0890-20130614|33089_1  89 QINDDDDDELTYRADEKTDQTTAAVQEPMIQNEERDVSAK 128
                  5666666666888899999999999*******99998776 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 8.9e-05
    PF04404.7 115 alfgIasedDdDa........anpteneqsqrskq 141
                  ++f+I +++DdD+        ++++++e + ++k+
  MMETSP0890-20130614|33089_1 257 GVFSIGDDEDDDDdfddessdNTKKQEEIDEKNKE 291
                  689**********6664433333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1029  (0.0752633); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:00.93
# Mc/sec: 1278.06
//
Query:       MMETSP0890-20130614|33105_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       901  (0.0659011); expected 273.4 (0.02)
Passed bias filter:                      557  (0.0407402); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.47s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 216.01
//
Query:       MMETSP0890-20130614|33106_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0076   15.3   0.2       0.37    9.7   0.1    2.4  2  PF05021.10 NPL4 family


Domain annotation for each model (and alignments):
>> PF05021.10  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.066     9e+02      51      84 ..      93     126 ..      75     128 .. 0.70
   2 !    9.7   0.1   2.7e-05      0.37      89     158 ..     161     227 ..     113     244 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.066
   PF05021.10  51 eiakklGLervGvIftdltdagakdgtvlckrhk 84 
                    a+ +   rvG +f  l d +++   v+ +r+ 
  MMETSP0890-20130614|33106_1  93 PQARVCTEARVGAVFERLFDMKDEVYYVYGRRDT 126
                  4566777789999999999888777666666665 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 2.7e-05
   PF05021.10  89 LsslEvitaAklqlkhpkatkysetgefgsk..fvtcvisgdeegeieieayqvSdqaeaLvkadiiepstd 158
                  L+++ ++ +A +ql+ ++++        gs+  fv + +  +++++ ++ea+ vS++  ++  ++ + ++ +
  MMETSP0890-20130614|33106_1 161 LTASHIVASAFIQLETMRTSLLL----SGSSfpFVLL-VASQSNNQTALEAFEVSEHLIQIAAEGGLRTQIH 227
                  78889999999999886665554....3444005554.4446788999999999999999888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.62
# Mc/sec: 985.60
//
Query:       MMETSP0890-20130614|33115_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-05   24.8   0.0    3.5e-05   24.1   0.0    1.4  1  PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
  ------ inclusion threshold ------
      0.038   14.1   0.0      0.083   13.0   0.0    1.6  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.2e-09   3.5e-05       1      83 [.      23     124 ..      23     158 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.2e-09
    PF14226.1   1 iPvidlsp...ssedreevakelreAceevGffqvvnhgvpeelieevfeaarefFalpleeKeklarspefrgysrlgsektdg................k 83 
                  iP+id+++   + e+++ +++++++ + ++G++ v+   v+++  e+ +++++++F++++  K++      + g ++++ e +++                 
  MMETSP0890-20130614|33115_1  23 IPIIDIEAflkHGESEKLLCQAVAKGLSDCGCLIVKDPRVDSSANEKFLDMMEQYFEQSDGIKDARPELHYQVGVTPARVELARNhcgfaksladapvsicP 124
                  9******999655888999*******************************************9998888888888888888776655555555555555551 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.2e-05     0.083      21      86 ..     234     299 ..     228     334 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.2e-05
                  EEEESSSCEEEEEEET--EEEEE.E-EESCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE---- CS
   PF03171.15  21 pHtDnenriltillqddggglqf.rkedkwidvppdpv.allvnfgdvllvltngryksvlHrvlpnt 86 
                  +H+D   ++lt+       gl +  +++k i+ p+ p+  llv  g++l+ lt+g+  + +H+v +n+
  MMETSP0890-20130614|33115_1 234 FHYDL--NFLTVHGKSRYPGLTVwLRDGKAIKGPKIPQgHLLVQAGKQLEWLTGGKVLAGFHEVIANE 299
                  79999..9999998855555554155669999********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1567.79
//
Query:       MMETSP0890-20130614|33128_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-12   45.7   0.1    3.6e-11   42.4   0.0    1.9  1  PF03133.10 Tubulin-tyrosine ligase family
     0.0043   15.7   0.2       0.25    9.9   0.0    2.3  2  PF14398.1  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.021   14.4   0.0       0.25   10.9   0.0    2.3  2  PF13535.1  ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   7.9e-15   3.6e-11      64     264 ..      37     235 ..      16     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 7.9e-15
   PF03133.10  64 eesntwIvKpsasarGkgIrvfnklsdilki......vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkssslneesnekkgkkwslqelekylee.......irkeeiweeiesiiiktilaae...veasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlk 264
                  ++   w++Kp  s+   g+ +f++ ++i+         +q +k+ ++ q+ i++   +dg+ F++R   lv +  ++  Y++++  ++ a    +            +TN s++++     +++n  +++  +++  +++l+        +   ++ +++ +++ k+ ++++   ++ +++++  l+n++el+G D+++d++ +  LlE N +P++ 
  MMETSP0890-20130614|33128_1  37 YDL-GWVLKPNDSSNAWGVQFFHDDDEISPNnpssdqRQQEEKTIWILQRRINSQ-KLDGHFFHIRALLLVVG--DMDGYLFDDARVLIAVGDEQ------------ITNKSYNET--FVDKYDNDFHNRSLQIEIEKNHLPAslfksmrTICAKLLANLDDHVLKNRQRQDgpvNKKAPRHFFTLPNSYELFGLDFMLDDQSNLLLLEANPEPSMG 235
                  444.7************************8799999888899999*******995.679*************9..**********9999977655............566666666..44444555555555555555555554441111113456666667777777776699989999999********************************96 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0043        20     107     137 ..      73     103 ..      48     106 .. 0.86
   2 !    9.9   0.0   5.5e-05      0.25     211     236 ..     210     235 ..     165     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0043
    PF14398.1 107 kkklskkkylvQqgidlieiegrpvDfRvlv 137
                  +++ +k+ +++Q+ i+ ++ +g  + +R+l+
  MMETSP0890-20130614|33128_1  73 RQQEEKTIWILQRRINSQKLDGHFFHIRALL 103
                  555667789*******************986 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 5.5e-05
    PF14398.1 211 ELGlDlglDkegriWllEvNskPgkk 236
                    GlD+ lD++ ++ llE+N  P+  
  MMETSP0890-20130614|33128_1 210 LFGLDFMLDDQSNLLLLEANPEPSMG 235
                  46*******************99865 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.5e-05      0.25      42      99 ..      41     103 ..      28     181 .. 0.84
   2 ?    1.3   0.0      0.05   2.3e+02     156     177 ..     209     230 ..     134     235 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.5e-05
    PF13535.1  42 vvlKPadgagslgvrrvddaaeleaalealaaeveldegeflvEeyie.....Gdeysvdglv 99 
                  +vlKP d++ + gv++++d++e+       +++++++++ ++++  i      G  +++ +l+
  MMETSP0890-20130614|33128_1  41 WVLKPNDSSNAWGVQFFHDDDEISPNNPSSDQRQQEEKTIWILQRRINsqkldGHFFHIRALL 103
                  8**********************9996666666667889999999888777776666666655 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.05
    PF13535.1 156 gvfHlEfkltpdGrlvliEina 177
                   +f l+f+l+++ +l l+E+n+
  MMETSP0890-20130614|33128_1 209 ELFGLDFMLDDQSNLLLLEANP 230
                  5688999999997799999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.41s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 1227.61
//
Query:       MMETSP0890-20130614|33130_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-66  222.9   0.0    2.1e-64  217.7   0.0    2.2  1  PF05602.7  Cleft lip and palate transmembrane protein 1 (CLPTM1)
     0.0013   18.0   0.9      0.087   12.2   0.1    3.0  2  PF04193.9  PQ loop repeat
  ------ inclusion threshold ------
       0.12   11.4   0.1       0.23   10.5   0.1    1.5  1  PF04824.11 Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> PF05602.7  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.7   0.0   4.6e-68   2.1e-64      92     432 .]     156     531 ..      17     531 .. 0.79

  Alignments for each domain:
  == domain 1    score: 217.7 bits;  conditional E-value: 4.6e-68
    PF05602.7  92 eltikipke....vqnNgslylhvvlsksgssldpkakeydskkavhlvap..LtkYlpkk....akkkknLLseksek....eeeeeeeeelkeeivsywkpnltlslvvdqtsvskaqlppalaeylrleesgar...yyPilfvnefwqlkehlveinetvkelpltielsplslwklqllasmeesakeqak.lGgskkeadelKeilldtNpyLLalTlivsllHlvFefLAfknDiqfWkkkkdleGlSvrsillnvfmqliIfLYLlDneTSwmilvsqgiGllieaWKitkvvkvrirk.................rsvipyriefedkgklseteskTkeYDeiAfkYLsyllvpllvayavYSllY 432
                   + +++p++    ++ N +lylh+ + ++ +s   k  + ++++ +  + p  L+kY p+     a  k++LL++          + +  + ++ ++v+ wkp+  + +v ++ ++++    p ++   +  + g r   y P  +v+e  +  ++++ +n++++ lplti++spls  ++ql+a+me+ +++q++ +G s++++d++++++ dt  +LLa+T++ s lHl+FefLAfk+D++fW+++k+l+GlS+rs++++ ++q++++ +L+D+  S+++ +++++G+l+++WK+ +++ ++i+                    ++ +++e ++ +++ e  + T++ D+ A  YLs +l+pl+v+ +   l+Y
  MMETSP0890-20130614|33130_1 156 PIRVALPEAawskLEANHTLYLHAAIFQTLASGTWKGLSDTDERRTARLEPlvLVKYEPPPtgpsALPKRKLLTDFGLGyfgpPAPWSPSPPPPGTFVAKWKPEAAVRIVAESRKWPDVIQAPGMRLIQKRMPGGGRqlfYAPPTYVDEIGLTSDKYISLNNSLNSLPLTISFSPLSFARWQLIAKMEDGLRAQQRdFGLSDNDIDDVRRLIADTHTWLLAVTILASCLHLLFEFLAFKSDVEFWRNNKSLQGLSARSVIVELVSQTVVLAFLIDEGSSLLVSIPSALGILVQCWKVRRATGITIDTskpffiscprlvstttgTPKLDNNLESDEDRRARELLQTTQRVDAAATFYLSLVLLPLIVGWSLKCLVY 531
                  6677777766666788999999988888777654444333333333444446688998875321244678888887766543323333333688899*********************99999999999999999889***************************************************998766527*************************************************************************************************************999999888887764333333334888777899***************************998766666 PP

>> PF04193.9  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.014        62      26      53 ..     402     429 ..     401     437 .. 0.86
   2 !   12.2   0.1   1.9e-05     0.087      11      43 ..     551     583 ..     538     592 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.014
    PF04193.9  26 krkSteGlSilflllwllGdilyllyli 53 
                  ++kS +GlS  +++ +l++ +  l++li
  MMETSP0890-20130614|33130_1 402 NNKSLQGLSARSVIVELVSQTVVLAFLI 429
                  59****************9988777766 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.9e-05
    PF04193.9  11 vlwlvsyiPQiikNykrkSteGlSilflllwll 43 
                  ++ +++ +PQ+ +Ny  kS+  l    l++ ++
  MMETSP0890-20130614|33130_1 551 TFGFILMVPQLALNYTLKSVSHLPWKLLCFRFV 583
                  34567778**************99888887765 PP

>> PF04824.11  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1     5e-05      0.23       8      30 ..     495     517 ..     488     519 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5e-05
                  ----------HHHH---HHHHHH CS
   PF04824.11   8 lsqlpagttRkeAArlFYelLvL 30 
                  + +l++ t+R  AA++FY  LvL
  MMETSP0890-20130614|33130_1 495 ARELLQTTQRVDAAATFYLSLVL 517
                  56889999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:01.09
# Mc/sec: 1400.44
//
Query:       MMETSP0890-20130614|33142_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-23   82.3   0.0    5.7e-23   81.9   0.0    1.1  1  PF13419.1  Haloacid dehalogenase-like hydrolase
    2.1e-09   38.1   0.0    5.3e-09   36.7   0.0    1.6  1  PF00702.21 haloacid dehalogenase-like hydrolase
    2.1e-06   27.2   0.0    3.4e-06   26.5   0.0    1.3  1  PF13242.1  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.031   14.3   0.0      0.041   13.9   0.0    1.3  1  PF12710.2  haloacid dehalogenase-like hydrolase
      0.094   12.5   0.0        2.4    7.9   0.0    2.2  2  PF13344.1  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   2.1e-26   5.7e-23       1     175 [.      17     226 ..      17     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 2.1e-26
    PF13419.1   1 ivFDldgTLidfdfvikralrklvaerlgldltaaelrelggkpfeev.......................ladllrelpkdaeeilealkea....nlesrlelfpdvvellrrlkakglklvilSngsaeavellleklgledlfdavftsddvgarKPdpeayekvlerl.......gvkpeeilfidDsl.edveaAraaGirtvh 175
                  i+FD+ gTLid +  i++ +++++   l ++++a+e+  +++++f+e+                       + ++  + +++++e+++ + +        +  ++ p+v+e+l+ l +kgl l+++Sn + ++++ +l  l+l ++fd +++  d ga KP+pe++ + l ++        ++p++il+i+Dsl  d   AraaG+ + +
  MMETSP0890-20130614|33142_1  17 ISFDITGTLIDHQESIAETYARCAQLTLTDPPSAEEMQPAFRRAFKEAsknepyfgypgnerewwkytvrlCLEYTGKIDINEDEFNRYFYRVyqhfGSPKGYTVLPQVRECLKFLSEKGLLLGVTSNTPHRTIDTTLPMLDLSKYFDFFVCTADLGAEKPEPEIFNRTLFEVqtllndfTIQPHQILHIGDSLvADYCGARAAGFSALY 226
                  79*******************98666666679999999999999999999999999999999998886444333334445557777776666655544346678************99************************************************99988888888888*************************99865 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.9e-12   5.3e-09       1     204 []      14     221 ..      14     221 .. 0.70

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.9e-12
                  ECEEEEECCTTTBETHHHHHHHHHHHHHHHHHCCCCCSCCHHHHHHHHHHHHHH.CEECTCCHCCEECEEEE.....EE..HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGEBHHHHHHHHHHHHHTTC.EEEEESSCHHHHHHHHHHTTC.....SEEEEHHH...TTSHHHHHHHHHHHTS.......-GGGEEEEESSC.TTHHHHHHTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.....xx..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx...xxxxxxxxxxxxxxxx.......xxxxxxxxxxxx.xxxxxxxxxx RF
   PF00702.21   1 iktvvfDktGTLtegepsvlgnkaalalaaaletgsehpigkavvaaakanstr.tgfatfigrgvsgkvdg.....av..gnpewmtalglrv.iapdlvaaegqskgrtvvvlaqaralgviafadpvkpeaaeavasLkaagi.vvlltgdnpetaeaiakqagi.....dslvfaev...kPepklfvaaieeLqi.......dpgevamvGDgv.nDapalaaAg 204
                  i+++ fD+tGTL++ ++s+   ++  a  a+l t+++ p ++  + a  ++  + +               +      +  + +ew + +         +++ ++++ +r+   ++ +++        +v p ++e ++ L ++g+ +++ ++    t + +   + +       + +a+    kPep++f++++ e q+       +p++++++GD++  D  +++aAg
  MMETSP0890-20130614|33142_1  14 IRAISFDITGTLIDHQESI---AETYARCAQL-TLTDPPSAEEMQPAFRRAFKEaS---------------KnepyfGYpgNEREWWKYTVRLClEYTGKIDINEDEFNRYFYRVY-QHFGSP--KGYTVLPQVRECLKFLSEKGLlLGVTSNTPHRTIDTTLPMLDLskyfdFFVCTADLgaeKPEPEIFNRTLFEVQTllndftiQPHQILHIGDSLvADYCGARAAG 221
                  6899***************...4455555555.45666666666666665444421...............123223236444555555544433444555555566666666665.455544..4556***********************99999999999999999999533334444899*******8888887777777777****************9999997 PP

>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-09   3.4e-06       3      53 ..     175     232 ..     173     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-09
                  ---STHHHHH.......HH----GGTTTEEEE---.HHHHHHHHH---EE-------- CS
    PF13242.1   3 gKPnpgmydk.......alevlgappsevvmiGDslatDieaAnaaGirsilVltGvs 53 
                   KP+p+++ +        l+++++ p ++++iGDsl +D  +A+aaG +++ ++ G +
  MMETSP0890-20130614|33142_1 175 EKPEPEIFNRtlfevqtLLNDFTIQPHQILHIGDSLVADYCGARAAGFSALYLNRGEK 232
                  699*****99544444445555999*************************99999875 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.041       3     183 ..      19     209 ..      17     243 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
                  E------B---........................HHHHHHHHH--H...HHH.........................................HHHHHHHHHHHHT-HHHH----HHHHHHHHHH.......................H--BHHHHHHH......HTTEEEE-SS-HHHHHHH...HH.---EE--B--GGG-.----HH----HHHHHHH.HHSHHHHHHHH---T.T----S--EE--- CS
    PF12710.2   3 FDkDGTLtedd.tdflryllk..............lldvlgealakdaslaslkdst.................................cltlsdpkdllellaeyggirviglaarylealakeieea................klfegfipdaaellkelheaglrvvvlsgdprliakpv...ak.elgidevnvlatel.edegggkvdgritgkld.gKaraverlvvlayk.qvggrivvaiGDs 183
                  FD++GTL++   +  ++ +++                                   +                                 cl ++ ++d++e  +                                         +++    p+++e lk l e+gl   v s +p  ++  +   ++  +++d    ++t            ++  +++  + +  v+    l +  +++ + ++ iGDs
  MMETSP0890-20130614|33142_1  19 FDITGTLIDHQeS-IAETYARcaqltltdppsaeeM--------------------QpafrrafkeasknepyfgypgnerewwkytvrlCLEYTGKIDINEDEF------------------------NryfyrvyqhfgspkgyTVL----PQVRECLKFLSEKGLLLGVTSNTPHRTIDTTlpmLDlSKYFDF--FVCTADlG-------AEKPEPEIFnRTLFEVQ---TLLNDfTIQPHQILHIGDS 209
                  9********9943.2222222322222222211111....................0222222233333334444444444444444444444444444444444........................02233222223333333444....5555999999899*****9999999888888544334555555..44444422.......22222222211222222...3344445666666666665 PP

>> PF13344.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.058   1.6e+02       2      18 ..      18      34 ..      17      46 .. 0.84
   2 ?    7.9   0.0   0.00087       2.4      11      46 ..     117     152 ..     109     165 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.058
    PF13344.1  2 lfDvdGvLwrgdkaipg 18
                  fD+ G+L++ ++ i +
  MMETSP0890-20130614|33142_1 18 SFDITGTLIDHQESIAE 34
                 69********9998876 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00087
    PF13344.1  11 rgdkaipgaaealkalraagkpvvllTNnsskseee 46 
                  +g++++p++ e+lk+l ++g  + + +N   ++ ++
  MMETSP0890-20130614|33142_1 117 KGYTVLPQVRECLKFLSEKGLLLGVTSNTPHRTIDT 152
                  5899************************99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.34s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 756.90
//
Query:       MMETSP0890-20130614|33132_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-23   82.5   0.2    2.7e-10   40.1   0.0    3.6  4  PF00307.26 Calponin homology (CH) domain
     0.0012   18.3   0.0       0.12   11.9   0.0    3.0  2  PF11971.3  CAMSAP CH domain


Domain annotation for each model (and alignments):
>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     4e-14   2.7e-10       2     108 ..      11     119 ..      10     120 .. 0.89
   2 !   37.1   0.0   3.4e-13   2.3e-09       2     108 ..     135     232 ..     134     233 .. 0.92
   3 ?    0.6   0.1     0.072   4.9e+02       6      51 ..     245     296 ..     243     310 .. 0.69
   4 ?   -2.8   0.0      0.83   5.6e+03      46      82 ..     716     750 ..     708     753 .. 0.63

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 4e-14
                  HHHHHHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSS.SGGGS..TCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTTS.-HHHHHTST-HHHHHHHHHHHHHHH CS
   PF00307.26   2 dallrWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlv.dledi..skclke.svadsleNlqlalefaeeklgvscvl.tledllysgnkknvlaflaeLfrrf 108
                  + +++++n +l+  +++++++++++d++DG++L all+ ++ +++ +l +i  +k  ke s++d++ Nl+  +  ++++  ++ v   + d+  +g  ++vl+++++L+ +f
  MMETSP0890-20130614|33132_1  11 RLFTNFCNAKLADRDDIPPMTDILEDIKDGRVLYALLEVLSGQSLaPLGKIkkPKAGKElSHIDKVANLSISFRYIHQT--TKIVGiGPGDVA-DGHSSLVLGLIWSLIVFF 119
                  57899*******9999**************************99879999974444455***************99995..566667******.**************9776 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 3.4e-13
                  HHHHHHHHHHHTTSTCTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSSSHHHHHHHHHHHHHHHHHHCT-TTTS..-HHHHHTST-HHHHHHHHHHHHHHH CS
   PF00307.26   2 dallrWinkvlekleqsrqvenlskdlsDGvaLaallhkycpdlvdlediskclkesvadsleNlqlalefaeeklgvscvl..tledllysgnkknvlaflaeLfrrf 108
                  +++l+W++k +ek   +++++nl +++  G a++a+lh + p   ++e    +      ++ +N q+a++ a+ek+gv+++l    edl+  ++ ++++++l+eL++r+
  MMETSP0890-20130614|33132_1 135 KKILKWCQKRTEKN-PDVEIKNLKDSFMGGNAFLAILHDVDPVGSPYEPT--S------SASKNYQKAFDDAAEKYGVPQLLdaNDEDLW--KDDQSMVTYLSELMKRL 232
                  789*********99.589************************98899999..5......899********99999*******77777887..99************986 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.072
                  HHHHHHHTTST.......CTSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGS CS
   PF00307.26   6 rWinkvlekle.......qsrqvenlskdlsDGvaLaallhkycpdlvdledi 51 
                  rW n+   k+e       +++ v++  + lsD++  a++l+ ++ ++ +l+ +
  MMETSP0890-20130614|33132_1 245 RWANENEPKAEddlaqlcKIPSVPDDPNHLSDCQHCANVLKDLASNK-NLKNV 296
                  67776665664577766666777788888888888888888888766.55555 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 0.83
                  SSGGGSTCCSSS.SHHHHHHHHHHHHHHHHHHCT-TTT CS
   PF00307.26  46 vdlediskclke.svadsleNlqlalefaeeklgvscv 82 
                  v+l+d+  + +  s+++ l N + + +f ++ + vs++
  MMETSP0890-20130614|33132_1 716 VKLSDM--HDSVkSLISLLANMNAVPKFQKS-VDVSSL 750
                  555666..32234778888888888887666.666665 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.8e-05      0.12       8      37 ..      25      54 ..      18      88 .. 0.85
   2 ?    3.0   0.0     0.011        72       6      31 ..     146     171 ..     141     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
    PF11971.3  8 plsppvenltrdlsDGvaLaalihfYcPkl 37
                 +++pp+ ++++d++DG++L al+  +  ++
  MMETSP0890-20130614|33132_1 25 DDIPPMTDILEDIKDGRVLYALLEVLSGQS 54
                 5799******************98876665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.011
    PF11971.3   6 qlplsppvenltrdlsDGvaLaalih 31 
                  + +  ++++nl+ ++  G a++a++h
  MMETSP0890-20130614|33132_1 146 EKNPDVEIKNLKDSFMGGNAFLAILH 171
                  555557899****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:02.27
# Mc/sec: 795.97
//
Query:       MMETSP0890-20130614|33155_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.19s 00:00:01.07 Elapsed: 00:00:01.35
# Mc/sec: 1049.07
//
Query:       MMETSP0890-20130614|33163_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   46.4   0.8    8.4e-12   44.4   0.6    2.1  1  PF04542.9  Sigma-70 region 2
      4e-09   35.5   1.3    1.1e-08   34.1   0.9    1.7  1  PF04545.11 Sigma-70, region 4
    1.2e-07   31.4   0.7    5.3e-07   29.3   0.4    2.2  2  PF04539.11 Sigma-70 region 3
    9.1e-06   25.1   0.5    9.1e-06   25.1   0.4    2.5  2  PF00140.15 Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.6   2.5e-15   8.4e-12       2      67 ..     151     230 ..     150     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 2.5e-15
                  HHHHHHHHHHHHHHHS-TT..............S-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHT CS
    PF04542.9   2 verylplvrrlarrllgsg..............adaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrr 67 
                  + ++ +lv++la r ++++                  Dlv e+ ++l  av+r+dperg++fs++++ +ir+a+++ + r
  MMETSP0890-20130614|33163_1 151 ILSNMRLVVSLASRAYRQArppmsngvsrdgesTTLGDLVAEGVVGLATAVDRWDPERGFRFSTYATFWIRQAVRRSYQR 230
                  6678888888888884444444444455555658999************************************9997765 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.9   3.1e-12   1.1e-08       4      50 .]     341     391 ..     340     391 .. 0.96

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 3.1e-12
                  TS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHHH CS
   PF04545.11   4 sLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLRk 50 
                  +L + er+vl+lr     g  ++  E+G++ g+sr rVr +e+ A+rkLRk
  MMETSP0890-20130614|33163_1 341 KLLPSERDVLRLRLglddGASRSRTEVGRISGLSRDRVRHLESSAIRKLRK 391
                  67799*********************************************7 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.5   8.6e+03      52      67 ..     177     191 ..     164     195 .. 0.62
   2 !   29.3   0.4   1.6e-10   5.3e-07       1      61 [.     242     302 ..     242     307 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.5
   PF04539.11  52 lpvgeeedgelgdlle 67 
                  +    e  ++lgdl++
  MMETSP0890-20130614|33163_1 177 VSRDGE-STTLGDLVA 191
                  444444.788888876 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.6e-10
   PF04539.11   1 eklnkikraqreLeqelgRePtpeEiAeelgiseekvrevleaarepvsldlpvgeeedge 61 
                  e+++k k+ ++eLe +lgR Pt +E A+++g+s +++  + +a   + s dlp++  ++g+
  MMETSP0890-20130614|33163_1 242 ELARKAKQSAQELEEKLGRPPTSDEYAAQVGLSTKQLAIARRALDTVASIDLPASGRSQGH 302
                  7899*************************************************99887765 PP

>> PF00140.15  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.4   2.7e-09   9.1e-06      10      36 ..      89     115 ..      87     116 .. 0.89
   2 ?   -1.3   0.2      0.46   1.6e+03      23      31 ..     241     249 ..     241     255 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.7e-09
                  H-------TTHHHHHHHHHHH---HHH CS
   PF00140.15  10 EIgrvpLLTaeEEveLArrieaGdela 36 
                  EI + pLL+aeEE++L+rri+ ++e++
  MMETSP0890-20130614|33163_1  89 EILSLPLLNAEEEIALGRRIRTLVEIE 115
                  66678*****************99976 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.46
                  HHHHHHHH- CS
   PF00140.15  23 veLArriea 31 
                  +eLAr++++
  MMETSP0890-20130614|33163_1 241 QELARKAKQ 249
                  59****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      408  (0.029842); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.21s 00:00:00.96 Elapsed: 00:00:01.22
# Mc/sec: 801.40
//
Query:       MMETSP0890-20130614|33171_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-11   41.8   9.7    8.8e-07   28.3   2.9    2.5  2  PF13414.1  TPR repeat
    9.8e-07   28.1   5.8       0.01   15.5   0.8    3.6  3  PF07719.12 Tetratricopeptide repeat
    1.2e-05   24.5   8.1     0.0083   15.5   1.2    2.8  2  PF00515.23 Tetratricopeptide repeat
    8.7e-05   22.9   0.6    8.7e-05   22.9   0.4    2.8  4  PF13432.1  Tetratricopeptide repeat
     0.0016   18.3   0.9      0.011   15.7   0.4    2.6  3  PF13431.1  Tetratricopeptide repeat
     0.0019   18.5   2.9     0.0065   16.8   0.1    3.3  3  PF13428.1  Tetratricopeptide repeat
     0.0028   17.1   2.5       0.47   10.2   0.0    3.1  2  PF13181.1  Tetratricopeptide repeat
     0.0061   16.5   6.0       0.01   15.8   3.3    2.1  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.065   13.0   0.4      0.065   13.0   0.3    3.0  2  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   2.9   5.8e-10   8.8e-07       2      69 .]      66     152 ..      65     152 .. 0.84
   2 !   16.2   0.2   3.5e-06    0.0054       2      62 ..     154     222 ..     153     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 5.8e-10
    PF13414.1   2 nAealkelGnalfk.....egd..ydeAieayekAleld.....pnnae...........lyynlAlaylklgkdyeeAledyekAleldP 69 
                  +A+ +ke+Gn++fk     e++  y +A ++y+ +++l+     +   +           l +n++++ l l  +y +A +d+++Al+ld+
  MMETSP0890-20130614|33171_1  66 LADDAKERGNRHFKtalktEKKmwYRQAAKEYTDGIALCmaaadE---SnderpielesqLKANRGACSLALR-NYGAAKKDCREALNLDK 152
                  58899*********9999866678**************6333332...033467789999************8.8**************95 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 3.5e-06
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnae........lyynlAlaylklgkdyeeAledye 62 
                  n +al++lG a++ ++++d A  a e +++ +p+na+        + +  ++a+++l  ++++A++  +
  MMETSP0890-20130614|33171_1 154 NTKALYRLGKACLALKQWDAAMNAGELGVSTQPENAKafremikfAKNKKSQALRELQTKRKDAIHIWT 222
                  5689*********************************88888777777789999999778888887665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.9   4.4e+03      17      30 ..      90     103 ..      89     105 .. 0.68
   2 !   15.5   0.8   6.6e-06      0.01       6      34 .]     126     154 ..     122     154 .. 0.94
   3 !   12.7   0.0   5.3e-05      0.08       2      29 ..     156     183 ..     155     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.9
                  HHHHHHHHHHHHHH CS
   PF07719.12  17 yeeAleafekAlel 30 
                  y +A++ +   ++l
  MMETSP0890-20130614|33171_1  90 YRQAAKEYTDGIAL 103
                  67777777766665 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 6.6e-06
                  HHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                  n+G + ++l++y  A++++++Al ld +n
  MMETSP0890-20130614|33171_1 126 NRGACSLALRNYGAAKKDCREALNLDKKN 154
                  89************************986 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 5.3e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                  +aly+lG+a+++l++++ A +a e  ++
  MMETSP0890-20130614|33171_1 156 KALYRLGKACLALKQWDAAMNAGELGVS 183
                  69*****************988665555 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.2   5.4e-06    0.0083       6      34 .]     126     154 ..     122     154 .. 0.94
   2 !   11.9   0.4   7.8e-05      0.12       2      21 ..     156     175 ..     155     177 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.4e-06
                  HHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekALelnPnn 34 
                  n+G++ l l +y  A +++++AL l+ +n
  MMETSP0890-20130614|33171_1 126 NRGACSLALRNYGAAKKDCREALNLDKKN 154
                  9************************9886 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 7.8e-05
                  HHHHHHHHHHHHTT-HHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAl 21 
                  kaly+lG a+l l+++d A 
  MMETSP0890-20130614|33171_1 156 KALYRLGKACLALKQWDAAM 175
                  79****************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.5   8.3e+03      43      58 ..      93     108 ..      88     114 .. 0.57
   2 !   22.9   0.4   5.7e-08   8.7e-05       8      56 ..     132     180 ..     131     189 .. 0.88
   3 ?   -3.7   0.0         9   1.4e+04      14      27 ..     215     228 ..     212     235 .. 0.76
   4 ?   -3.9   0.0         9   1.4e+04      51      57 ..     335     341 ..     331     348 .. 0.48

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 5.5
    PF13432.1  43 rlgrldeAaallraal 58 
                  +++++ + +al  aa+
  MMETSP0890-20130614|33171_1  93 AAKEYTDGIALCMAAA 108
                  2366666666666665 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 5.7e-08
    PF13432.1   8 lraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallra 56 
                  l++++y +A +  ++al l+ ++  al++l+ a+l+l+++d+A  + + 
  MMETSP0890-20130614|33171_1 132 LALRNYGAAKKDCREALNLDKKNTKALYRLGKACLALKQWDAAMNAGEL 180
                  6899***************************************866655 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 9
    PF13432.1  14 deAlaaleaalala 27 
                  ++A++++ ++++ +
  MMETSP0890-20130614|33171_1 215 KDAIHIWTRIVKHE 228
                  78999999998876 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 9
    PF13432.1  51 aallraa 57 
                  +a+ +a+
  MMETSP0890-20130614|33171_1 335 EAYADAI 341
                  2333333 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         9   1.4e+04       9      17 ..       8      16 ..       6      27 .. 0.68
   2 !   15.7   0.4   7.2e-06     0.011       2      32 ..     144     174 ..     143     176 .. 0.95
   3 ?   -2.2   0.0       4.1   6.2e+03       9      19 ..     185     195 ..     183     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 9
    PF13431.1  9 dPnnadayn 17
                 + +++++++
  MMETSP0890-20130614|33171_1  8 NSDSPESWT 16
                 778888887 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.2e-06
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeA 32 
                  +++al+ld++n+ a+++L+++ l++++++ A
  MMETSP0890-20130614|33171_1 144 CREALNLDKKNTKALYRLGKACLALKQWDAA 174
                  799*************************988 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 4.1
    PF13431.1   9 dPnnadaynnL 19 
                  +P+na a++++
  MMETSP0890-20130614|33171_1 185 QPENAKAFREM 195
                  69999998876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.1   9.3e+03      13      28 ..      93     108 ..      89     115 .. 0.59
   2 ?    6.1   0.1     0.012        19       9      43 ..     129     163 ..     122     164 .. 0.87
   3 !   16.8   0.1   4.3e-06    0.0065       2      42 ..     156     196 ..     155     198 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 6.1
    PF13428.1  13 alGdpdeAiallrral 28 
                  a+ ++ ++ial+ +a+
  MMETSP0890-20130614|33171_1  93 AAKEYTDGIALCMAAA 108
                  4556666666666664 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.012
    PF13428.1   9 rallalGdpdeAiallrralalaPddaealllLar 43 
                  +  lal ++ +A + +r+al l+ ++  al++L++
  MMETSP0890-20130614|33171_1 129 ACSLALRNYGAAKKDCREALNLDKKNTKALYRLGK 163
                  55679999*************************97 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 4.3e-06
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLa 42 
                  +al++l+ a+lal ++d+A+++ +  ++++P++a a +++ 
  MMETSP0890-20130614|33171_1 156 KALYRLGKACLALKQWDAAMNAGELGVSTQPENAKAFREMI 196
                  699*******************************9988875 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.4     0.012        18       6      33 ..     126     153 ..     122     154 .. 0.86
   2 !   10.2   0.0   0.00031      0.47       2      23 ..     156     177 ..     155     183 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
                  T---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   6 nlGdiYrqlGdydkAkeylekalelkpr 33 
                  n+G + + l +y +Ak+  ++al l+++
  MMETSP0890-20130614|33171_1 126 NRGACSLALRNYGAAKKDCREALNLDKK 153
                  6777778899***************984 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00031
                  --TTT---HHHHTT-HHHHHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkey 23 
                  ka+y+lG++ + l+++d+A+++
  MMETSP0890-20130614|33171_1 156 KALYRLGKACLALKQWDAAMNA 177
                  79*****************986 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.2   7.9e+03      51      71 ..      26      45 ..      19      53 .. 0.63
   2 !   15.8   3.3   6.6e-06      0.01      24      79 ..     120     176 ..      75     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.2
                 TSHCHCBHHHHHHHHHHHHHT CS
    PF12895.2 51 leldssslgcryllArcllkl 71
                 + ld++s g   l+A++l ++
  MMETSP0890-20130614|33171_1 26 KLLDDES-GEEALFAESLNDM 45
                 3444555.6777777777666 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 6.6e-06
                  HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHTT-HHHHCC CS
    PF12895.2  24 edaylyalAlclylngeykrAyellrk.leldssslgcryllArcllklgkydeAia 79 
                  e+    + + c + + +y +A + +r+ l+ld+++ ++ y l++++l+l+++d A +
  MMETSP0890-20130614|33171_1 120 ESQLKANRGACSLALRNYGAAKKDCREaLNLDKKNTKALYRLGKACLALKQWDAAMN 176
                  4445555788999999*********99**************************9975 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   4.3e-05     0.065       9      47 ..      78     115 ..      71     127 .. 0.84
   2 ?   -0.1   0.6      0.52   7.9e+02       4      40 ..     139     183 ..     136     216 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.3e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTTHHC CS
   PF04212.13   9 ikkAveaDeagkyeeAlelYkeAlelLlqalkyepnper 47 
                  +k+A++ +++  y +A + Y++++ l++ a   e+n+er
  MMETSP0890-20130614|33171_1  78 FKTALKTEKKMWYRQAAKEYTDGIALCMAAAD-ESNDER 115
                  79**************************9955.555554 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.52
                  HHHHHHHHHHHHHHTT........-HHHHHHHHHHHHHHHHHHHH CS
   PF04212.13   4 kAlelikkAveaDeag........kyeeAlelYkeAlelLlqalk 40 
                  +A++  ++A++ D+++        k   Al+    A +  + +++
  MMETSP0890-20130614|33171_1 139 AAKKDCREALNLDKKNtkalyrlgKACLALKQWDAAMNAGELGVS 183
                  566666777777776533333333444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.68
# Mc/sec: 1532.96
//
Query:       MMETSP0890-20130614|33173_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.0   0.7    9.1e-10   38.0   0.0    2.4  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4     0.026   3.5e+02     122     122 ..     204     204 ..     101     232 .. 0.54
   2 !   38.0   0.0   6.7e-14   9.1e-10      45     115 ..     245     315 ..     223     316 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.026
   PF01529.15 122 l 122
                  l
  MMETSP0890-20130614|33173_1 204 L 204
                  1 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 6.7e-14
   PF01529.15  45 nnekrfCkkCqtikpprshHCriCnkCvlkfDhHCpwvnncIGarNhkyFllfllyltlllvialllslri 115
                  n + r+  + +t +pp + + ++ +  v +fDh Cpw++  IGa+N + F  f+  l++++++ +ll l++
  MMETSP0890-20130614|33173_1 245 NSSWRWNDQARTFRPPGAVYDEDLGLVVEGFDHVCPWTGTGIGANNINAFHAFVTILCICIILDILLLLQV 315
                  556677888899*****************************************999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       629  (0.0460064); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.89
# Mc/sec: 853.53
//
Query:       MMETSP0890-20130614|33193_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-14   51.8  25.6    0.00044   19.9   0.1    7.8  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.22   10.9   0.0    1.2  1  PF13967.1  Late exocytosis, associated with Golgi transport


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.3    0.0055        38      13      33 ..      25      45 ..      19      49 .. 0.88
   2 !   14.2   0.0     4e-06     0.027       7      38 ..      71     101 ..      65     102 .. 0.92
   3 !    6.9   0.9   0.00078       5.3       2      36 ..     149     182 ..     142     185 .. 0.89
   4 !    8.7   0.2   0.00021       1.4      27      39 .]     215     227 ..     211     227 .. 0.95
   5 !   19.9   0.1   6.5e-08   0.00044      12      39 .]     250     277 ..     234     277 .. 0.87
   6 ?    0.1   0.0      0.11   7.8e+02      23      35 ..     302     314 ..     290     318 .. 0.78
   7 !    9.5   0.1   0.00012       0.8       3      38 ..     326     359 .]     324     359 .] 0.92

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0055
                 SEEEEEEESSSTEEEEEETTS CS
   PF00400.27 13 pVtcvafspdgpllasgSrDg 33
                 p  c+++s  g+ ++ gS+D+
  MMETSP0890-20130614|33193_1 25 PLLCLSVSSKGHDCVVGSADH 45
                 678*****************7 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 4e-06
                  EESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                   +gH  +Vt+va   d + ++s++ Dg++ lW
  MMETSP0890-20130614|33193_1  71 RSGHAEWVTAVAHLND-TNVLSAGMDGKLILW 101
                  58**************.*************** PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00078
                  EEEEEE.ESSSSSEEEEEEESSSTEEEEEETTSEEE CS
   PF00400.27   2 eckatl.rgHtspVtcvafspdgpllasgSrDgtir 36 
                  +c+atl +g ++p  c ++  d  l++ g rDg+i 
  MMETSP0890-20130614|33193_1 149 TCIATLaSGSSAPALCACWRND--LCLIGDRDGSIS 182
                  688888899999999*******..**********96 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.00021
                  EEEETTSEEEEEE CS
   PF00400.27  27 asgSrDgtirlWd 39 
                  +sgS Dg++r Wd
  MMETSP0890-20130614|33193_1 215 ISGSQDGCLRFWD 227
                  7***********9 PP

  == domain 5    score: 19.9 bits;  conditional E-value: 6.5e-08
                  SSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgSrDgtirlWd 39 
                  ++V c+a    g+l+as+++Dg +r+Wd
  MMETSP0890-20130614|33193_1 250 GAVGCLAEITGGNLIASAGADGHLRVWD 277
                  56778888888****************9 PP

  == domain 6    score: 0.1 bits;  conditional E-value: 0.11
                  STEEEEEETTSEE CS
   PF00400.27  23 gpllasgSrDgti 35 
                  gp+l+sg + g+i
  MMETSP0890-20130614|33193_1 302 GPMLISGDAKGNI 314
                  89*****999988 PP

  == domain 7    score: 9.5 bits;  conditional E-value: 0.00012
                  EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  c   l +  ++V++++  pd  ll+  ++Dg+  +W
  MMETSP0890-20130614|33193_1 326 CCWGLGANRGAVRALDARPD--LLVAVGDDGNALVW 359
                  667789999***********..***********999 PP

>> PF13967.1  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.3e-05      0.22      40      89 ..      61     109 ..      50     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.3e-05
    PF13967.1  40 seeelppplpskglfgWipallkisdeevlqsaGLDAyvflrflkmgiki 89 
                  ++++++  ++++g  +W++a+ +++d++vl+ aG+D+ + l + + ++++
  MMETSP0890-20130614|33193_1  61 QKPKRTLYSKRSGHAEWVTAVAHLNDTNVLS-AGMDGKLILWTGTRATEL 109
                  678999999999******************8.****98888766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.61
# Mc/sec: 1410.32
//
Query:       MMETSP0890-20130614|33201_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-29   99.6   1.0      2e-20   72.8   0.0    2.1  2  PF12796.2  Ankyrin repeats (3 copies)
    1.6e-24   85.6   0.1    2.9e-12   46.6   0.0    3.2  3  PF13637.1  Ankyrin repeats (many copies)
    3.1e-22   77.0   0.7    1.6e-06   27.4   0.0    4.8  5  PF00023.25 Ankyrin repeat
    3.6e-21   74.5   3.2    1.2e-08   34.8   0.0    4.4  5  PF13857.1  Ankyrin repeats (many copies)
    9.3e-19   65.5   0.4    0.00013   21.7   0.0    5.1  5  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.035   13.5   0.1      0.082   12.2   0.0    1.7  2  PF06128.6  Shigella flexneri OspC protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   8.6e-24     2e-20       1      88 [.      44     138 ..      44     139 .. 0.91
   2 !   27.5   0.1   1.2e-09   2.7e-06      21      83 ..     133     200 ..     130     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 8.6e-24
    PF12796.2   1 LhlAaengnlelvklLle.kgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLl.ekgadvnlr 88 
                  L  Aae+g+le+v  ++e k+ d++      + ++L+  aeag+leivk+L+eaga+v+ +d +g+tpL++A+ +gh+e+v++L+ ++ adv+++
  MMETSP0890-20130614|33201_1  44 LLEAAETGDLETVVRIIEsKEVDINAvddvdSYSALMMSAEAGHLEIVKALIEAGAQVEIRDSYGRTPLYAAAVAGHIEIVRFLVrDASADVQAT 138
                  678**************98999999876654444***************************************************7779998876 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1.2e-09
    PF12796.2  21 advdl....getpLhlAaeagnleivklLle.agadvnakdkegntpLhlAvrnghlelvklLlekga 83 
                  adv       +++L + ++  +++i+ +Lle +++++n+   +g+t++ +A+++gh+e++++L  +ga
  MMETSP0890-20130614|33201_1 133 ADVQAtdceDRSVLWASCAVRRIDIAAVLLEdNECNLNTVAGSGETAMDFAIKHGHAEVADFLRANGA 200
                  5555344434448888899999********97789999999**********************99987 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.4e-09   3.1e-06       6      54 .]      45      95 ..      42      95 .. 0.94
   2 !   46.6   0.0   1.3e-15   2.9e-12       3      54 .]      77     128 ..      75     128 .. 0.97
   3 !   21.5   0.0   9.6e-08   0.00022      12      53 ..     153     195 ..     143     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.4e-09
    PF13637.1  6 hyaaisgrlelvklLlekg.idinrt.desGntaLhiAalrgnieilklLl 54
                   aa  g+le+v  ++e++ +din++ d +  +aL   a++g++ei+k L+
  MMETSP0890-20130614|33201_1 45 LEAAETGDLETVVRIIESKeVDINAVdDVDSYSALMMSAEAGHLEIVKALI 95
                 57999***********9966******99*********************98 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 1.3e-15
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  +aL++ a +g+le+vk L+e g+++  +d++G+t+L+ Aa +g+iei+++L+
  MMETSP0890-20130614|33201_1  77 SALMMSAEAGHLEIVKALIEAGAQVEIRDSYGRTPLYAAAVAGHIEIVRFLV 128
                  899***********************************************96 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 9.6e-08
    PF13637.1  12 grlelvklLlek.gidinrtdesGntaLhiAalrgnieilklL 53 
                   r+++++ Lle    ++n + +sG+ta+++A+++g+ e++ +L
  MMETSP0890-20130614|33201_1 153 RRIDIAAVLLEDnECNLNTVAGSGETAMDFAIKHGHAEVADFL 195
                  58999*****873699****999****************9998 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0065        15       8      33 .]      46      72 ..      44      72 .. 0.92
   2 !   27.4   0.0   7.2e-10   1.6e-06       3      32 ..      76     105 ..      74     106 .. 0.94
   3 !   26.1   0.0   1.8e-09   4.2e-06       1      32 [.     107     139 ..     107     140 .. 0.96
   4 ?   -0.5   0.0      0.52   1.2e+03      13      29 ..     153     170 ..     143     172 .. 0.73
   5 !   12.1   0.0   5.2e-05      0.12       2      26 ..     176     200 ..     175     201 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0065
                 HHHHTTHHHHHHHHHH.TTSSTTHBHT CS
   PF00023.25  8 lAalrgnlevvklLls.qGAdlnaqdd 33
                  Aa+ g+le v   ++ +  d+na+dd
  MMETSP0890-20130614|33201_1 46 EAAETGDLETVVRIIEsKEVDINAVDD 72
                 69***********************97 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 7.2e-10
                  CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +++L++ a+ g+le+vk L+++GA + ++d
  MMETSP0890-20130614|33201_1  76 YSALMMSAEAGHLEIVKALIEAGAQVEIRD 105
                  68*************************998 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.8e-09
                  TSCBHHHHHHHTTHHHHHHHHHH.TTSSTTHBH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLls.qGAdlnaqd 32 
                  +G+TPL  Aa  g++e+v++L+  + Ad+ a+d
  MMETSP0890-20130614|33201_1 107 YGRTPLYAAAVAGHIEIVRFLVRdASADVQATD 139
                  69****************************998 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.52
                  THHHHHHHHHH.TTSSTT CS
   PF00023.25  13 gnlevvklLls.qGAdln 29 
                   +++++  Ll+ + ++ln
  MMETSP0890-20130614|33201_1 153 RRIDIAAVLLEdNECNLN 170
                  478999999998777777 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 5.2e-05
                  SCBHHHHHHHTTHHHHHHHHHHTTS CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGA 26 
                  G+T+   A+++g++ev+ +L  +GA
  MMETSP0890-20130614|33201_1 176 GETAMDFAIKHGHAEVADFLRANGA 200
                  99******************99998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   4.9e+02      23      46 ..      47      71 ..      34      73 .. 0.86
   2 !   34.8   0.0   5.1e-12   1.2e-08      12      56 .]      71     115 ..      65     115 .. 0.89
   3 !   27.7   0.0   8.7e-10     2e-06       1      47 [.      94     140 ..      94     148 .. 0.82
   4 !   15.7   0.1   5.3e-06     0.012       6      56 .]     132     183 ..     129     183 .. 0.93
   5 !   14.1   0.1   1.7e-05     0.039       4      35 ..     164     195 ..     161     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.21
    PF13857.1 23 AakggalevvrlLl.apgadlnlrd 46
                 Aa+ g+le v  ++  +++d+n+ d
  MMETSP0890-20130614|33201_1 47 AAETGDLETVVRIIeSKEVDINAVD 71
                 89999***99999988889988877 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 5.1e-12
    PF13857.1  12 tdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                   d  ++++L++ a++g+le+v+ L+++ga   +rds+g+t+l  A
  MMETSP0890-20130614|33201_1  71 DDVDSYSALMMSAEAGHLEIVKALIEAGAQVEIRDSYGRTPLYAA 115
                  455566************************************877 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 8.7e-10
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl.apgadlnlrds 47 
                  L+e+g a+v  +d +g+tpL+ Aa +g+ e+vr+L+ ++ ad  ++d 
  MMETSP0890-20130614|33201_1  94 LIEAG-AQVEIRDSYGRTPLYAAAVAGHIEIVRFLVrDASADVQATDC 140
                  89999.99****************************555555555554 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 5.3e-06
    PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldlA 56 
                  +adv atd + +++L   +   + +++  Ll +++++ln+   +g+ta+d+A
  MMETSP0890-20130614|33201_1 132 SADVQATDCEDRSVLWASCAVRRIDIAAVLLeDNECNLNTVAGSGETAMDFA 183
                  688999999999999999********************************98 PP

  == domain 5    score: 14.1 bits;  conditional E-value: 1.7e-05
    PF13857.1   4 hgpadvnatdeggntpLhlAakggalevvrlL 35 
                   +  ++n+  ++g+t+  +A+k+g++ev+++L
  MMETSP0890-20130614|33201_1 164 DNECNLNTVAGSGETAMDFAIKHGHAEVADFL 195
                  44589999*********************998 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.052   1.2e+02       6      30 .]      44      69 ..      42      69 .. 0.86
   2 !   21.7   0.0   5.6e-08   0.00013       3      29 ..      76     102 ..      74     103 .. 0.92
   3 !   19.1   0.0   4.1e-07   0.00093       1      28 [.     107     135 ..     107     137 .. 0.87
   4 ?    3.5   0.0     0.045     1e+02       6      29 ..     146     170 ..     141     171 .. 0.75
   5 !   11.7   0.0   9.4e-05      0.21       2      26 ..     176     200 ..     175     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.052
    PF13606.1  6 LhlAasngrielveaLleng.adina 30
                 L  Aa+ g +e v   +e+  +dina
  MMETSP0890-20130614|33201_1 44 LLEAAETGDLETVVRIIESKeVDINA 69
                 778**************974499996 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 5.6e-08
    PF13606.1   3 nTpLhlAasngrielveaLlengadin 29 
                  +++L++ a+ g++e+v+aL+e+ga++ 
  MMETSP0890-20130614|33201_1  76 YSALMMSAEAGHLEIVKALIEAGAQVE 102
                  689*********************985 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 4.1e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLle.ngadi 28 
                  +G+TpL+ Aa  g+ie+v++L++ + ad+
  MMETSP0890-20130614|33201_1 107 YGRTPLYAAAVAGHIEIVRFLVRdASADV 135
                  8********************97246776 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.045
    PF13606.1   6 LhlAasngrielveaLle.ngadin 29 
                  L   +  +ri+++  Lle n +++n
  MMETSP0890-20130614|33201_1 146 LWASCAVRRIDIAAVLLEdNECNLN 170
                  555577789********94569988 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 9.4e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlenga 26 
                  G+T+++ A+++g+ e++++L  nga
  MMETSP0890-20130614|33201_1 176 GETAMDFAIKHGHAEVADFLRANGA 200
                  99*****************988886 PP

>> PF06128.6  Shigella flexneri OspC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.85   1.9e+03     251     278 ..      73      99 ..      43     106 .. 0.54
   2 ?   12.2   0.0   3.6e-05     0.082     251     280 ..     173     202 ..     143     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.85
    PF06128.6 251 vnsGdtmldnavkyenaemiklllknGa 278
                  v+s  +++  a   ++ e++k+l+  Ga
  MMETSP0890-20130614|33201_1  73 VDSYSALMMSA-EAGHLEIVKALIEAGA 99 
                  33333333222.3455566666666666 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.6e-05
    PF06128.6 251 vnsGdtmldnavkyenaemiklllknGail 280
                  + sG+t +d a+k+++ae++++l  nGai 
  MMETSP0890-20130614|33201_1 173 AGSGETAMDFAIKHGHAEVADFLRANGAID 202
                  579*************************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 902.91
//
Query:       MMETSP0890-20130614|33215_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-14   53.0   0.0    3.9e-14   52.1   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.9e-18   3.9e-14       3      78 .]      12      90 ..      10      90 .. 0.97

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2.9e-18
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26  3 lekkgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78
                 +++ g+++++l+g++  ++r++ +++fn+++s    +l++t++++ Gi+l ++++V+  d++++++   Q+++R++R+g
  MMETSP0890-20130614|33215_1 12 CSHLGLETCRLDGSTDIRDRQQLVDNFNSSNSafdIFLLSTRAGGLGINLVGADTVVLHDCDFNPEIDRQAVDRCHRIG 90
                 67899************************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.42s 00:00:00.95 Elapsed: 00:00:00.61
# Mc/sec: 974.26
//
Query:       MMETSP0890-20130614|33218_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-21   75.0   6.8    5.1e-21   74.8   4.7    1.0  1  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.024   13.9   6.1       0.03   13.6   4.2    1.2  1  PF01925.14 Sulfite exporter TauE/SafE
       0.08   11.3   3.2        1.1    7.5   1.9    2.1  2  PF00860.15 Permease family
        1.5    8.1   5.6        7.7    5.8   3.9    2.2  1  PF06738.7  Protein of unknown function (DUF1212)


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   4.7   1.5e-24   5.1e-21     191     318 ..       1     125 [.       1     126 [. 0.97

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.5e-24
   PF02535.17 191 LAiGvsssedtgislflAvllHelphelglgaiLlkagasrkkavllnllfaltaplGaliGiavsaadnsgrsdlvsgillalaaGtflYvalvellpeelanekslkqnllqllglllGfalmlll 318
                  +A++v+ ++  +i l ++++lH+  + ++l + Ll+ag+  kk   l ++f+++ p+G ++G+++        + l+ +il al+aGtf+Yv+ +e++pee+++e s +q   + ++ll G+a ml+l
  MMETSP0890-20130614|33218_1   1 MALAVAKTKFAAILLAASIALHQPAESIALLVTLLRAGLVGKKLRRLLITFSIMGPIGSALGLFL---HDVVSNPLLDAILIALTAGTFVYVGATEVIPEEFDSEASTEQLPQKAAYLLSGVASMLAL 125
                  89***************************************************************...7777888999*****************************99999*************987 PP

>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.2   8.8e-06      0.03      46     140 ..      25     121 ..       1     128 [. 0.58

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.8e-06
   PF01925.14  46 vtslvgalahrrkgnvd...wrlllplllgallGallGallllllpskllkllfgvlllllallm....llrkkraaekgrlrrpslilllllgglvvGfls 140
                  + s++ +++ +r g v     rll+++ + + +G++lG++l  ++++ ll +++ +l +++ +++    ++    + e+++++ p+ ++      l+ G++s
  MMETSP0890-20130614|33218_1  25 AESIALLVTLLRAGLVGkklRRLLITFSIMGPIGSALGLFLHDVVSNPLLDAILIALTAGTFVYVgateVIPEEFDSEASTEQLPQKAA-----YLLSGVAS 121
                  233333444444443322214799999***************************99999999999633322333333323333333332.....22244444 PP

>> PF00860.15  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.9   0.00032       1.1     100     144 ..      29      74 ..      27      96 .. 0.81
   2 ?    3.0   0.1    0.0077        26     187     229 ..      77     119 ..      73     132 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00032
                  HHHHHHHHT----.-HHHH.--TTT---HHHH-------------- CS
   PF00860.15 100 gvlfilisltglrgrlarl.ipPvvtgpvvlliGlslaqiavkkvg 144
                  ++l++l+++ +++++l+rl i+  ++gp+   +Gl+l++++ +  +
  MMETSP0890-20130614|33218_1  29 ALLVTLLRAGLVGKKLRRLlITFSIMGPIGSALGLFLHDVVSNPLL 74 
                  68899999999999**99648******************9987665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0077
                  HH-------HHHHH---TTSSHHHHS-SS-----------HH. CS
   PF00860.15 187 iLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplf 229
                  iLi+++ag+++++  + v  ++  sea++ qlp+   +  + +
  MMETSP0890-20130614|33218_1  77 ILIALTAGTFVYVGATEVIPEEFDSEASTEQLPQKAAYLLSGV 119
                  6666666666666666443333345555555555444444433 PP

>> PF06738.7  Protein of unknown function (DUF1212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.9    0.0023       7.7     118     172 ..      37      92 ..       5     137 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0023
    PF06738.7 118 avlfggdwidvliaf.lagllggllrvvlakrklnpfvaealaaflaalialllls 172
                  a l+g ++  +li+f ++g +g +l ++l+ +  np++  +l a++a++++++++ 
  MMETSP0890-20130614|33218_1  37 AGLVGKKLRRLLITFsIMGPIGSALGLFLHDVVSNPLLDAILIALTAGTFVYVGAT 92 
                  55666666677777646777799************************999888873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.75
# Mc/sec: 440.93
//
Query:       MMETSP0890-20130614|33225_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.5   0.2       0.23   10.8   0.1    1.3  1  PF11781.3 RNA polymerase I-specific transcription initiation factor Rrn7


Domain annotation for each model (and alignments):
>> PF11781.3  RNA polymerase I-specific transcription initiation factor Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.7e-05      0.23      17      28 ..      71      82 ..      69      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.7e-05
    PF11781.3 17 rwfrsddGfyyC 28
                 r+f+ +dG+yyC
  MMETSP0890-20130614|33225_1 71 RLFQGRDGLYYC 82
                 699********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.45s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 494.25
//
Query:       MMETSP0890-20130614|33230_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        61  (0.00446167); expected 273.4 (0.02)
Passed bias filter:                       59  (0.00431539); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.39s 00:00:00.62 Elapsed: 00:00:00.69
# Mc/sec: 107.66
//
Query:       MMETSP0890-20130614|33227_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-27   94.4  13.8    1.9e-25   89.4   9.6    2.5  1  PF04004.8  Leo1-like protein
  ------ inclusion threshold ------
       0.26   10.9   6.2       0.44   10.1   4.3    1.4  1  PF03105.14 SPX domain


Domain annotation for each model (and alignments):
>> PF04004.8  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   9.6   2.8e-29   1.9e-25      71     295 ..      27     293 ..      10     339 .. 0.70

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 2.8e-29
    PF04004.8  71 eaganevffikipnflsvetkpfdpetfeeeadeeaaldeadeegrqriklrventvRwRlskdkdgkvvkeSNAkiVrWsDGslsLkiGneifdileqdlsedqnhLfv..kHeqktllqsq.gvikkkltfrPsstnskthrkltanrlatrqkkskkvkltivgkdPelekeerekkeeeklrarrrrqkreklkkkk.P........................................deddedyrsnegeded....eaqrerkik.......n 295
                  +a+   v+ ik+p fl vet++++ e+  +e     ++      +r  ++  ++  +    + +   + ++eSNAki++ sDG l+L++G + ++   +     + h+++  k   ++++ +q +++++++ ++Ps + s th+k+t    ++r+ + +kvk++ v++dP  e+eer++   ++ + + rr++r++++++  P                                        ++d++d+  +++e+ed    + +  +++        n
  MMETSP0890-20130614|33227_1  27 DASLRGVNVIKLPRFLKVETEAYESESSRAETA-VSTI-----RWR-YVRDELDGEIQRDPNTN---EALRESNAKIIKLSDGRLQLLVGRDRYNLNPRRQVA-KSHIYAhtKPKEGHMIMCQiAKVTNHMNVTPSDMLSDTHKKVTLKA-RERSLQKSKVKQIYVQQDPIKEQEERARLRDDEIKREARRRQRSQPRRHImPgmtasfledddtgggggeislnaikrssrsartqrpifddQDDQDDFIADDDEEEDevdeD-SDASRKVgsipdndN 293
                  455677899999999999999999998777766.1221.....233.34555555554333333...479*************************98554333.36777622445799*******************************6.**********************************************9996257777777777777777777777777777777777777776555555666666666544421.222222233344331 PP

>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.3   6.4e-05      0.44     109     202 ..     169     314 ..     132     341 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.4e-05
   PF03105.14 109 dFykekekeleerledLekqletlaerrtkksdeykarqeeql........................yieaksffsdheamagpsnsvqakeksqekndqlqkqsndeessqesdse......................................r 202
                  +++k+k+k+++ + + +++q e+ + r+++ ++e+++rq+ q                                    + +a +  s +a+ ++  ++dq+++++  +++++e+d+                                        
  MMETSP0890-20130614|33227_1 169 SLQKSKVKQIYVQQDPIKEQEERARLRDDEIKREARRRQRSQPrrhimpgmtasfledddtgggggeI----------SLNAIKRSSRSARTQRPIFDDQDDQDDFIADDDEEEDEVdedsdasrkvgsipdndndyerppprraaqravrrmqvD 314
                  5699**************************************9*****99999999955555544441..........444433344444444444444333333222222211111333345555567666666666777666665555444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       783  (0.0572703); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.04
# Mc/sec: 797.25
//
Query:       MMETSP0890-20130614|33233_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.4   0.0    0.00094   18.7   0.0    1.8  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.9e-08   0.00094      12     116 ..       6     123 ..       2     134 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.9e-08
                  TTS...EEEEEEECSTTSSTTEEEESBEEETTT.TSHHHHHHHHHHHHHH.S-EEEEEEEEEEEEEEETTCCC.....SEEEEEEEEEEEEETGGGCSTTTS........TEEEEEEEEHHHH CS
   PF00293.23  12 edg...kvLlvqrsrskltapglwefPgGkvdk.gEspeeaAvRElkEEt.Gidlekvrlvgvanydaptddp.....kreevifflaelpddepeiilntt........Evsevrwvpleel 116
                  ed+    vL +++++      g +  PgG v + + ++ + A+RE+ EEt G+ + + +l  + +++++  +       + +++  l+ ++++ + +  + +        E++ + w+ l++l
  MMETSP0890-20130614|33233_1   6 EDNtllAVLQLKHRSG-----GKYGSPGGYVSRsDPTIKDGACREFYEETpGLNVLQMGLTQWKEHRYGRVTIfsandSNGRLSSALMGVSSRRNSASKCRSwnyrvhqnETTGYAWIKLNDL 123
                  4554444555555555.....9****************************5555544444444444444444466666445555555555555556666666667777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 653.55
//
Query:       MMETSP0890-20130614|33238_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       452  (0.0330603); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.74
# Mc/sec: 1126.94
//
Query:       MMETSP0890-20130614|33239_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-07   29.2   0.1     0.0014   17.8   0.0    3.2  3  PF12204.3 Domain of unknown function (DUF3598)


Domain annotation for each model (and alignments):
>> PF12204.3  Domain of unknown function (DUF3598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0013        18       2      26 ..      72      97 ..      71     124 .. 0.89
   2 !   17.8   0.0     1e-07    0.0014      97     161 ..     162     234 ..     157     275 .. 0.83
   3 !    3.4   0.0    0.0025        35     223     248 ..     391     416 ..     387     420 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0013
    PF12204.3  2 qWenll.knlGeWkGsftrysptgel 26
                  W++ +  + G+W+G   r++ +g l
  MMETSP0890-20130614|33239_1 72 AWNRVCdFHSGSWRGVSRRVKVDGVL 97
                 6**************99998887755 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1e-07
    PF12204.3  97 fsefgaEfgflhk.drrlrlvllydengqLeritlirEhrags.........daaerppLtveqLlgeWrGeaqt 161
                    +f  E+ f+ + + r++l + yd+ + L+ it++ E r g           ++er     + L geW+G+a+ 
  MMETSP0890-20130614|33239_1 162 GHQFCSELTFALGnNERVKLIIGYDALNYLSDITVLDEVRLGLtdetsvgarRTTERT--DLWSLAGEWQGDATV 234
                  678999**99765278************************999999998865555655..7899*******9976 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0025
    PF12204.3 223 WlvsenklqrlirsYdakgawvsltl 248
                  ++++  +l r ir Yd +g++ s+t 
  MMETSP0890-20130614|33239_1 391 KQPTVRHLARTIRLYDSEGQLASVTS 416
                  56667789999*********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.43s 00:00:01.19 Elapsed: 00:00:00.77
# Mc/sec: 1319.55
//
Query:       MMETSP0890-20130614|33248_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   26.8   0.5    1.6e-05   23.6   0.4    1.9  1  PF03982.8 Diacylglycerol acyltransferase


Domain annotation for each model (and alignments):
>> PF03982.8  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.4   1.2e-09   1.6e-05     159     286 ..       4     142 ..       1     149 [. 0.72

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.2e-09
    PF03982.8 159 gketltLkkrkGfvkialktGadLvPvysfGendvykqvenpkgsklrkvqeklkkvlglsppilyGrglfnsltlGllPfrkpittvvGkPievtkteePtkeeid...............elhakYveaLaeLfeehkekf 286
                   ke +++++  G  k+a+ +  ++  +y fGen++y  + n    + rk+++ + + +++ +p + Gr   +   + ++P   p+  + G  ++ + +    +++ +               e  + Y  aL++Lf++hk +f
  MMETSP0890-20130614|33248_1   4 HKELVFVQRSLGLFKLAVIHDVPIAICYVFGENQMYTTYPN----RFRKLRTLIANSFRVGLPWISGRFGIGLGPVPVIPHPGPVCHIFGPYLDLSDLSRQYQQQSAkstvnndqllyelasEAFERYKIALNKLFDKHKRRF 142
                  57789999999*************************99876....68999*****************97777666778889999*9999998887655444443333000001111111111334556667777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.33s 00:00:00.77 Elapsed: 00:00:00.90
# Mc/sec: 460.63
//
Query:       MMETSP0890-20130614|33259_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   45.1   1.2    4.1e-08   33.4   0.1    2.1  2  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   2.2e-05       0.3       1      21 [.       8      28 ..       8      37 .. 0.86
   2 !   33.4   0.1     3e-12   4.1e-08     118     163 ..      51      94 ..      33      95 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.2e-05
                 ----EESS-B----EEEEECC CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23  1 GrGvfAtedipkGefvceyvg 21
                 G G++At++++ Ge++ce v+
  MMETSP0890-20130614|33259_1  8 GKGLRATKELRVGELICEEVA 28
                 88***************7654 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 3e-12
                  -TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 118 gpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                     +r+ NHS  pN++v+f   +++ +v l+A+r+I+ ++E+tidY
  MMETSP0890-20130614|33259_1  51 AGNIRYTNHSFIPNAYVRFG--PTELAVSLVACRNIAIDDEITIDY 94 
                  5678***************9..6*********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 406.34
//
Query:       MMETSP0890-20130614|33255_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       950  (0.0694851); expected 273.4 (0.02)
Passed bias filter:                      533  (0.0389848); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.46s 00:00:00.86 Elapsed: 00:00:01.27
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|33253_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-27   95.7   0.0    2.7e-27   95.1   0.0    1.2  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0     2e-31   2.7e-27       1     268 [.       8     307 ..       8     311 .. 0.89

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 2e-31
   PF00248.16   1 elglGtwslgnd..eisedealellraaleaGinlfDtAeyYgkgqseellgealkk..srkkreeviiatKv..............................grispiseglsrenieesleksLkrlgtdylD...llllhrpdpslpsieevlealeelkkeGkirhiGvS..nfsveilekakkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalel 268
                  ++++Gt ++g+    is d++++++ +a+e G + fDtA+ Yg g se+ lg al++  ++   ++v + tKv                               + +    +++++ +++sl +s+ rlg+  +     + +h+p+ +     e+ ++ e  +      ++ vS    sv   ++a+ ++ v+ +++ +++nll ++  ++ll  c++k +++  ++ +++Gll g ++ ++++++++       + +++++la+++ +sl ++al++a+  pav ++ +g +s++q++ +++ le+
  MMETSP0890-20130614|33253_1   8 RVIVGTSAFGGLydSISYDQVYATVARAVEKGLKKFDTAPHYGLGVSEQRLGAALSQckAEMSISQVAVYTKVgrlihrradsndndrietenlpenslfvdcPKENCAILDYRKSGVTQSLYDSVARLGLTSIKelgGVRVHDPEIADR--YETEAFPEAFITLRQFNSFEVSigTNSVRVARRALDEGLVDAIMLANSWNLL-DQGGKDLLLSCHHKHIPVDLAGIYASGLLAGGNTFNYQPATESLV----SKRDRWKSLADKYAISLPAVALAFAFLPPAVRFIAIGLRSPDQVDTTIDLLET 307
                  589*******************************************************99999*****************************999999999885555556678889**************96665422788999999999..444444444444444444444442778*************************.8888888888****************************9998876....9************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 988.50
//
Query:       MMETSP0890-20130614|33247_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-13   48.7   0.0    6.7e-11   42.0   0.0    2.5  2  PF01926.18 50S ribosome-binding GTPase
    1.1e-05   24.6   0.0      0.012   14.7   0.0    2.3  2  PF02421.13 Ferrous iron transport protein B
     0.0044   16.1   0.0     0.0083   15.2   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
  ------ inclusion threshold ------
      0.018   13.6   0.1      0.038   12.6   0.1    1.4  1  PF03308.11 ArgK protein


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.011        38      65     113 ..     179     227 ..     122     229 .. 0.64
   2 !   42.0   0.0   1.9e-14   6.7e-11       2      59 ..     329     391 ..     328     438 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.011
                  HHHHHHHHHHHCTSSEEEEEEETTS...HHHHHHHHHHHHHHTCCCEEEEEE CS
   PF01926.18  65 iegikkylekveradvlllvvdasa...vlkeadkellneleakkplilvln 113
                  +++ ++ ++ +er+d +++vvda+        a+ +l+++ +  ++ +++ln
  MMETSP0890-20130614|33247_1 179 LDVWRQLWRTLERSDCIFVVVDARFpsfY---ANDDLIAYAKSLSKSVIILN 227
                  45678899999***********8764432...33344444433345555554 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 1.9e-14
                  EEEE--TT---HHHHHHHHCST......CTEETS-TT-SSSESEEEEETTEEEEEE---SSSHH CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgek......aakvsdypgtTrditenevkkekiilvDtPGiiega 59 
                  v++ G+pNvGKS+ +naL g++      +a vs++pg+T++ ++ +v +e ++l+D+PG++ +a
  MMETSP0890-20130614|33247_1 329 VGMTGYPNVGKSSCVNALRGASthgvgaRAAVSATPGKTKHLQTLRVSSE-LELCDCPGLVFPA 391
                  7999**************964334444499************44333333.58******98664 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00056       1.9      77     167 ..     190     282 ..     181     298 .. 0.73
   2 !   14.7   0.0   3.4e-06     0.012       3      56 ..     329     386 ..     327     390 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00056
                  H--SEEEEEEEGG..GHHHHHHHHHHHHHTT-SEEEEEETHHHHHC---EB-HHHHHHH----EEEEBCCGTB-.-HHHHHHHHHHCTCG-XXX CS
   PF02421.13  77 ekpdviinvvDas..nlernLyLtlqllelgvpvvvalnmiDeaekkgikidlkkLselLgvpvvktvarkkkg.ieelleaiievaekeekek 167
                  e+ d+i  vvDa   +   n  L++    l ++v++  n+ D +++++ ++ ++   e+ g++++ ++ar++++ +++  ++i ++ e+ e+ +
  MMETSP0890-20130614|33247_1 190 ERSDCIFVVVDARfpSFYANDDLIAYAKSLSKSVIILNNKADYLTQEQRQLWYQYWTEERGLRCLFFSARQEQQrLDAAAKEI-QMNEQVETDE 282
                  56788888888862245566677778888999999999*******************************99875144444444.4444333332 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.4e-06
                  EEEE--TT---HHHHHHH----TB.--------S--BB--EEE.....TTEEEEEEE--- CS
   PF02421.13   3 valvGnpnvGKttlfnaltgakqk.vgNwpGvTVekkegklkl.....kgkeveivDLPG 56 
                  v + G pnvGK++ +nal ga+++ vg  + v+   + gk+k+      ++e+e+ D PG
  MMETSP0890-20130614|33247_1 329 VGMTGYPNVGKSSCVNALRGASTHgVGARAAVSA--TPGKTKHlqtlrVSSELELCDCPG 386
                  6789**************9987654665444433..222222211111448899999999 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.4e-06    0.0083      40     100 ..     331     390 ..     304     402 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.4e-06
                  EE-------HHHHHHH--------S------.--------S-BEEE-.---EEES----TS- CS
   PF03193.11  40 lvGqSGvGKSsLinallpeldlkvgevsekl.grGkhTTtavellklsegglliDtPGfrel 100
                  ++G   vGKSs +nal++ ++  vg+  + +   Gk  T++ + l++s++  l+D PG+  +
  MMETSP0890-20130614|33247_1 331 MTGYPNVGKSSCVNALRGASTHGVGARAAVSaTPGK--TKHLQTLRVSSELELCDCPGLVFP 390
                  456666*************99999874443303344..7888999999999*******8655 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.1e-05     0.038      26      64 ..     323     362 ..     313     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
                  ----EEE--B-------HHHHHH-.--HHHH----EEEEE CS
   PF03308.11  26 aGralvvGltGvPGaGkstlvekl.ikelrrrGkrvavla 64 
                  + r l vG+tG P +Gks  v++l +++    G r av a
  MMETSP0890-20130614|33247_1 323 TERPLCVGMTGYPNVGKSSCVNALrGASTHGVGARAAVSA 362
                  667889*****************93455666788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.39s 00:00:01.30 Elapsed: 00:00:01.51
# Mc/sec: 931.56
//
Query:       MMETSP0890-20130614|33266_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.18
# Mc/sec: 836.69
//
Query:       MMETSP0890-20130614|33270_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-16   60.0   0.0    2.3e-16   59.6   0.0    1.1  1  PF13847.1  Methyltransferase domain
    1.9e-15   56.9   0.0      3e-15   56.3   0.0    1.3  1  PF08241.7  Methyltransferase domain
    3.8e-14   53.1   0.2    5.5e-14   52.5   0.1    1.2  1  PF12847.2  Methyltransferase domain
    3.8e-10   39.9   0.0    6.3e-10   39.3   0.0    1.4  1  PF08242.7  Methyltransferase domain
    8.8e-10   38.3   0.0    1.2e-09   37.9   0.0    1.2  1  PF13489.1  Methyltransferase domain
    9.2e-10   38.4   0.1    2.3e-09   37.1   0.1    1.7  1  PF13659.1  Methyltransferase domain
    2.2e-09   36.6   0.0    2.9e-09   36.2   0.0    1.1  1  PF01209.13 ubiE/COQ5 methyltransferase family
    2.4e-09   37.3   0.0    4.4e-09   36.5   0.0    1.4  1  PF13649.1  Methyltransferase domain
    1.8e-07   30.5   0.0    2.5e-07   30.1   0.0    1.1  1  PF05175.9  Methyltransferase small domain
     0.0001   21.5   0.0    0.00016   21.0   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
     0.0077   15.8   0.0      0.014   14.9   0.0    1.3  1  PF13679.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.045   13.1   0.0      0.069   12.5   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.083   11.8   0.0       0.12   11.2   0.0    1.3  1  PF02390.12 Putative methyltransferase
       0.14   11.1   0.1       0.21   10.5   0.1    1.3  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   2.3e-19   2.3e-16       4     113 ..      38     152 ..      36     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 2.3e-19
    PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevl.naladpqkvlk....eiervlkpggrlivesps......l 113
                  +i vlD+GCGt +ll e+    g ++++vG+D s  ai  A++       + +eF  gd  +++  ++ +sfD++i+++++ ++l++++++       + r++k ggr++++s++      l
  MMETSP0890-20130614|33270_1  38 DIAVLDVGCGTSTLLAEMR-SDGFRGRLVGLDVSSAAIDAARKQ----APKDIEFVTGDGRNAP--FPdSSFDVIIDKGTIdALLCAKNDASThlasDAARLVKLGGRYLICSHHqpdleeL 152
                  789****************.8899*******************4....5578************..************99995555555555556679***************994433330 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   3.1e-18     3e-15       1      95 []      42     141 ..      42     141 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 3.1e-18
    PF08241.7   1 LdvGcGtglllealaer.paarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehl.....edpekalkeiaRvLkpgGllvi 95 
                  LdvGcGt  ll+ +++    +r++g+D+s ++++ a+++++++ +e+v++d ++ pf+d+sfDv++   ++  l     +   ++ + +aR++k gG+ +i
  MMETSP0890-20130614|33270_1  42 LDVGCGTSTLLAEMRSDgFRGRLVGLDVSSAAIDAARKQAPKD-IEFVTGDGRNAPFPDSSFDVIIDKGTIDALlcaknDASTHLASDAARLVKLGGRYLI 141
                  8****************99*****************9999997.89*************************9999999777888999**********9875 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.1   5.6e-17   5.5e-14       4     112 .]      40     144 ..      37     144 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 5.6e-17
    PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkgltldallal..deprrvlealpkllkpggrlviesp 112
                   +lD+GcGt  l++e+ ++   +++vg+D s ++++ ar+ a        ie++ gd  +++ + +  fD++++kg t dall+   d ++ + + +++l+k ggr++i s+
  MMETSP0890-20130614|33270_1  40 AVLDVGCGTSTLLAEMRSDGFRGRLVGLDVSSAAIDAARKQA-----PKDIEFVTGDG-RNAPFPDSsFDVIIDKG-TIDALLCAknDASTHLASDAARLVKLGGRYLICSH 144
                  69****************999999******************.....799********.555555557********.999999998777777788999*********99886 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   6.4e-13   6.3e-10       1      98 [.      42     138 ..      42     139 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 6.4e-13
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl....kdir.evldnirklLkpgGv 98 
                  L++GcGt++ll +++ +  + +++g+D+s++ai++a+++  k +    ++v+ + +++   d+  sfDv++  +++ +l    +d    + + +++l+k gG+
  MMETSP0890-20130614|33270_1  42 LDVGCGTSTLLAEMRSDGFRGRLVGLDVSSAAIDAARKQAPKDI----EFVTGDGRNAPFPDS--SFDVIIDKGTIDALlcakNDAStHLASDAARLVKLGGR 138
                  8********************************66666666666....699999999877665..***********999888755553555577777777776 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.2e-12   1.2e-09      12     121 ..      27     155 ..       8     202 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.2e-12
    PF13489.1  12 llerllarlkpggrvLDiGcGtGillellaengf..dvtgvDpspaaigk.....akqaqksqfdeed....aaepagkfdliv....arevlehvpd.peellrqiaellkpgGylllstpnas.......l 121
                  +l +++ + +++  vLD+GcGt  ll++++  gf  +++g D s+aai +          k+ ++  +    a +p+ +fd+i+       +l+   d  ++l + +a+l+k gG  l++ +  +       +
  MMETSP0890-20130614|33270_1  27 NLRPIVNKWRRDIAVLDVGCGTSTLLAEMRSDGFrgRLVGLDVSSAAIDAarkqaP----KDIEFVTGdgrnAPFPDSSFDVIIdkgtIDALLCAKNDaSTHLASDAARLVKLGGRYLICSHHQPdleelhsD 155
                  45556655578889********************888***********99854442....444433334444888********722225556666666799*************9988888865433332220 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   2.3e-12   2.3e-09       4      75 ..      41     106 ..      38     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 2.3e-12
    PF13659.1   4 vldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvv 75 
                  vld+gcG+ t+l+ +   + + +l+g++++++a+++a++ +++      ++++ gd r+++  ++++sfd+++
  MMETSP0890-20130614|33270_1  41 VLDVGCGTSTLLAEMRSDGfRGRLVGLDVSSAAIDAARKQAPK-----DIEFVTGDGRNAP--FPDSSFDVII 106
                  9*************************************99875.....699********99..********98 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.9e-12   2.9e-09      46     162 ..      36     152 ..      26     174 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.9e-12
   PF01209.13  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvv....tvsfGlrnvtDklkaLk.eayrvlkpGGrlvvlefskvelpll 162
                  +r   vlDv +Gt+ l +++ +s g +g++v+lD+++  ++ ++k    ++ ++ief+++++ + pf d sfDv+    t+   l    D ++ L  +a r +k GGr ++    ++ l+ l
  MMETSP0890-20130614|33270_1  36 RRDIAVLDVGCGTSTLLAEM-RSDGFRGRLVGLDVSSAAIDAARK----QAPKDIEFVTGDGRNAPFPDSSFDVIidkgTIDALLCAKNDASTHLAsDAARLVKLGGRYLICSHHQPDLEEL 152
                  566789********999987.567999*********999988776....56789*******************98777799999999******9962699********99988888877765 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   4.5e-12   4.4e-09       1     101 []      41     137 ..      41     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 4.5e-12
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl.kvkfvqadaralpfeegefdlvvcaglsle...hlspkqlealleeiarvlkpgG 101
                  +ld+GCG+ + ++++      g + r++g+D+s  a+++a++++    + +++fv +d r+ pf++++fd+++  g  ++     ++++   l +++ar++k gG
  MMETSP0890-20130614|33270_1  41 VLDVGCGTSTLLAEMRSD---GFRGRLVGLDVSSAAIDAARKQA----PkDIEFVTGDGRNAPFPDSSFDVIIDKGT-IDallCAKNDASTHLASDAARLVKLGG 137
                  79******9999888855...6779******************9....449*********************99555.663322455666677778888777666 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.6e-10   2.5e-07      34     148 ..      40     150 ..      28     170 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.6e-10
                  ---B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--..--BS-EEE--------HHHHHHHHHHH---GGGB-----EEEEEETTSSHHH CS
    PF05175.9  34 kvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeve.ekkfdlivsNPPfhagkatelevaerliaeAkkhLkegGeLllVanrklgyee 148
                   vlD+GcG+  l a++ + + + +++ +D++ +A+++a++++     +++e+++ d+ ++   + +fd+i+    + a   ++ ++ ++l ++A++  k gG+  l+ ++++++ e
  MMETSP0890-20130614|33270_1  40 AVLDVGCGTSTLLAEMRSDGFRGRLVGLDVSSAAIDAARKQAP----KDIEFVTGDGRNAPFpDSSFDVIIDKGTIDALLCAKNDASTHLASDAARLVKLGGRY-LICSHHQPDLE 150
                  59************************************98764....4589******99987799***************99*********************9.66666666544 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   0.00016       7      88 ..      31     114 ..      25     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.6e-07
    PF07021.7   7 iaelikpgsrvldlGcGdGellellkeekqvdgr..Gleldeegvaecva...kGlsviqgdldkdlenfedksfdyvvlsqtlqat 88 
                  i +  +    vld+GcG  +ll  ++   + +gr  Gl+++++++ ++ +   k ++ + gd     + f+d+sfd+++ + t+ a+
  MMETSP0890-20130614|33270_1  31 IVNKWRRDIAVLDVGCGTSTLLAEMRS-DGFRGRlvGLDVSSAAIDAARKqapKDIEFVTGD--GRNAPFPDSSFDVIIDKGTIDAL 114
                  5566667778*************9977.7888876699999**9999876122456666655..45578**********99998775 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.014      23      74 ..      35      82 ..      24      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-05
    PF13679.1 23 eegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelae 74
                  ++++ v+DvG+G + L   + s      ++ ++vg+dv+++++++a++ a 
  MMETSP0890-20130614|33270_1 35 WRRDIAVLDVGCGTSTLLAEMRS----DGFRGRLVGLDVSSAAIDAARKQAP 82
                 467899*********99888888....559****************999875 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.1e-05     0.069      75     147 ..      39     106 ..      29     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.1e-05
                  -EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE--------GGG--BSEEE CS
   PF01135.14  75 arvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaih 147
                    vL+vG+G+  l a +    g +gr+v+++ +   +++a    +k++ +++ +v+gDGr+   + + +d+i+
  MMETSP0890-20130614|33270_1  39 IAVLDVGCGTSTLLAEMR-SDGFRGRLVGLDVSSAAIDAA----RKQAPKDIEFVTGDGRNAPFPDSSFDVII 106
                  579******988777664.3577889****9877655555....6778899*********9999999999986 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.12      19      65 ..      28      83 ..       3     133 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
                 GB-.........EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHH CS
   PF02390.12 19 eqk.........lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiea 65
                   +          vl++G+G +++l ++  +      +G++++++ ++++ k++ +
  MMETSP0890-20130614|33270_1 28 LRPivnkwrrdiAVLDVGCGTSTLLAEMRSDGFRGRLVGLDVSSAAIDAARKQAPK 83
                 33366667777789*********************************999988765 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00022      0.21     160     205 ..      36      82 ..      26     143 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00022
    PF06325.8 160 kegeevlDvGtGSG.iLaiaaakLgakkvvavDiDevAvkvakeNae 205
                  +++  vlDvG+G+  +La   +     + v++D+ + A+++a++ a 
  MMETSP0890-20130614|33270_1  36 RRDIAVLDVGCGTStLLAEMRSDGFRGRLVGLDVSSAAIDAARKQAP 82 
                  55668*******6615565556666789**************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.43s 00:00:00.99 Elapsed: 00:00:00.88
# Mc/sec: 664.44
//
Query:       MMETSP0890-20130614|33269_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-05   24.2   0.4    4.9e-05   22.9   0.2    1.7  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   3.6e-09   4.9e-05       1      31 []      52      84 ..      52      84 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.6e-09
                 ---SEEE.E.E-..---EEEEETTT--EESS-- CS
   PF00397.21  1 lppgWeersddd..dGrvYYyNheTgetqWekP 31
                 lp gW e +d+    +  +YyN+ Tg  qWe P
  MMETSP0890-20130614|33269_1 52 LPAGWIEGFDPHssKQSNFYYNTVTGHAQWEVP 84
                 7999**999955678999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 628.23
//
Query:       MMETSP0890-20130614|33280_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-70  235.9   0.0    4.1e-70  235.6   0.0    1.1  1  PF01259.13 SAICAR synthetase
  ------ inclusion threshold ------
      0.082   12.6   0.1       0.19   11.5   0.0    1.6  2  PF09255.5  Caf1 Capsule antigen


Domain annotation for each model (and alignments):
>> PF01259.13  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.6   0.0     6e-74   4.1e-70       4     246 ..      49     305 ..      46     308 .. 0.93

  Alignments for each domain:
  == domain 1    score: 235.6 bits;  conditional E-value: 6e-74
                  EEE----EEEEES--..--EEEEE-S--EETTEE-SS--TT---HHHHHHHHHHHHTTTT-EESB-----TTEEEE------SCEEEEE-----....-HHHHHH----..----------TT---SS-EE--EE------EE--HHHHHH..H---HHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEB---BTTTB-EEBS--S-TTTEEEE------....-------TTTHHHHHHHHHTT----.-.----- CS
   PF01259.13   4 llaeGKvrdiYevdd..etlllvakdrisAfdvvlkeeipeKgrilnklssfifeklqeaipnhlvekasetellvkklkliplEvvvRgyvtG....Sllkryktgvk..eGikledglveaqklddaiftPstkeeehdenislaqaek..lvGkeevdevkekalklyeklkkvakkkgiilvDtKlEFGldedgeivLaDeiltpDssRlWsaetye....kGkeqeslDKqflRdwleeneeale.evlkklp 246
                   +++GKvrd+Y+ +    ++++va+ r sAfd+ l   +p Kg +l++ls ++fe+++ + +nhlv+ ++   +++ +++ +p+E+vvRgy+tG    Sl+++y +g +  +Gi ++dgl ++qkld++i tP+tk++ehd+ i  a   k   + ++e +e +++al+l+e +++va k+g+ilvDtK+EFG + +g+ivL+Dei+tpDssR+W +++y+    +  e+e++DK+flR w ++ +++++ ++ + +p
  MMETSP0890-20130614|33280_1  49 DVYRGKVRDVYRPKGlpLYVVMVATGRQSAFDRQLTT-VPYKGVVLSRLSAWWFEQTKDISKNHLVSVPEPSTVVALRCQAFPIEFVVRGYITGststSLWTHYSNGDRiyCGITFPDGLRKNQKLDQNIVTPTTKDAEHDIPIAPADIIKsgRMNQSEWNECSRRALALFERGQQVASKRGLILVDTKYEFGKTPNGDIVLIDEIHTPDSSRFWLEHSYQsrfdQDLEPENIDKEFLRLWYKQRCDPYKdTIIPDAP 305
                  699************999*****************98.********************************************************999999****8886666*********************************9776533116788999************************************************************9888877899*******************955566655 PP

>> PF09255.5  Caf1 Capsule antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1   7.2e+03      99     113 ..      69      83 ..      67      89 .. 0.80
   2 ?   11.5   0.0   2.8e-05      0.19      35      78 ..     135     180 ..     129     196 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.1
                  -B-----EEEEEEE- CS
    PF09255.5  99 vvlatgsqdffvrsi 113
                  v++atg q  f r +
  MMETSP0890-20130614|33280_1  69 VMVATGRQSAFDRQL 83 
                  678999999998876 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.8e-05
                  E-------BGGGEEEE-----TT-EEEEE---..---EEEEEEE-- CS
    PF09255.5  35 lggyktgttstsvnftdaagdpmyltftsqdg..nnhqfttkvigk 78 
                  + gy tg+tsts+    + gd +y  +t  dg  +n+++  +++  
  MMETSP0890-20130614|33280_1 135 VRGYITGSTSTSLWTHYSNGDRIYCGITFPDGlrKNQKLDQNIVTP 180
                  679*********************9999999944456666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 1022.06
//
Query:       MMETSP0890-20130614|33271_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-11   41.4   7.3    8.8e-11   41.4   5.0    2.8  2  PF01363.16 FYVE zinc finger
    6.5e-10   38.4  13.5    6.5e-10   38.4   9.4    3.1  3  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    4.1e-05   23.5   0.2      0.019   15.0   0.0    2.8  2  PF13857.1  Ankyrin repeats (many copies)
     0.0016   18.6   0.0     0.0029   17.7   0.0    1.4  1  PF12796.2  Ankyrin repeats (3 copies)
      0.002   18.4   0.0     0.0053   17.1   0.0    1.8  1  PF13637.1  Ankyrin repeats (many copies)
     0.0044   16.6  15.2     0.0044   16.6  10.6    2.9  3  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
      0.016   15.2   0.0        5.9    7.3   0.0    2.7  2  PF13606.1  Ankyrin repeat
       0.89    8.7   6.3         12    5.1   2.4    2.2  2  PF01529.15 DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   5.0   5.1e-14   8.8e-11      11      66 ..     141     239 ..     130     242 .. 0.66
   2 ?   -3.9   7.2       7.2   1.2e+04       4      43 ..     443     482 ..     439     496 .. 0.68

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.1e-14
   PF01363.16  11 kCeiCakkFsltrrrhhCrlCGkvvCskCs.......................skrvekl.........................eeeaaeekevrvCkeClee 66 
                  +C +C+++F ++rr hhCr+CG +vCs+Cs                             +                             ++++ vrvC +C ++
  MMETSP0890-20130614|33271_1 141 SCGNCRHTFAVFRRCHHCRNCGLAVCSRCSvhwpsgtlpesalctdvksfakaA-----KifadrlpttstpqntnigskqtidaIRAWSSRTTVRVCLACDKA 239
                  7*****************************777766666655555554444440.....044444444444444444444444333555556666******876 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 7.2
   PF01363.16   4 vpdaeakkCeiCakkFsltrrrhhCrl..CGkv.vCskCsskr 43 
                  ++d++ak+C+ C ++         C l  CG+  +C++C  ++
  MMETSP0890-20130614|33271_1 443 KEDDAAKECTVCFSPLIP---EVRCALvpCGHTsCCQECAGSL 482
                  678899999999888743...4555544499862457787554 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.2   9.2         8   1.4e+04       5      32 ..     142     172 ..     138     185 .. 0.55
   2 ?   -1.9   0.1       1.4   2.4e+03       4      11 ..     232     239 ..     227     244 .. 0.55
   3 !   38.4   9.4   3.8e-13   6.5e-10       3      50 .]     449     495 ..     447     495 .. 0.91

  Alignments for each domain:
  == domain 1    score: -7.2 bits;  conditional E-value: 8
    PF13920.1   5 CvvCler....eadvlllpCgHlclCeeCaer 32 
                  C  C+      +++  +  Cg + +C+ C+ +
  MMETSP0890-20130614|33271_1 142 CGNCRHTfavfRRCHHCRNCGLA-VCSRCSVH 172
                  55555542222333444455555.66666655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
    PF13920.1   4 tCvvCler 11 
                   C  C + 
  MMETSP0890-20130614|33271_1 232 VCLACDKA 239
                  34444444 PP

  == domain 3    score: 38.4 bits;  conditional E-value: 3.8e-13
    PF13920.1   3 ktCvvCler...eadvlllpCgHlclCeeCaerllkrkkkCpiCrspiesv 50 
                  k+C+vC++    e +++l+pCgH  +C+eCa +l    ++Cp+Cr+++++v
  MMETSP0890-20130614|33271_1 449 KECTVCFSPlipEVRCALVPCGHTSCCQECAGSL----ATCPLCRTSVDRV 495
                  79******6555999*******************....*********9876 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.019      12      42 ..     278     307 ..     270     319 .. 0.81
   2 !    5.7   0.0      0.01        17      18      36 ..     323     341 ..     315     348 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
    PF13857.1  12 tdeggntpLhlAakggalevvrlLlapgadl 42 
                   ++gg  p+h A+  g+l++v++L+ ++ d+
  MMETSP0890-20130614|33271_1 278 FHLGGLLPIHAAVASGSLPLVQWLV-QELDC 307
                  567899*******************.55554 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.01
    PF13857.1  18 tpLhlAakggalevvrlLl 36 
                  ++L +A+++ a+e++++Ll
  MMETSP0890-20130614|33271_1 323 SVLRIAVEHAATEILEWLL 341
                  799***************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.7e-06    0.0029      21      79 ..     266     341 ..     233     347 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.7e-06
    PF12796.2  21 advdlget.............pLhlAaeagnleivklLle......agadvnakdkegntpLhlAvrnghlelvklLl 79 
                  a+v++  +             p+h+A+++g+l  v++L++       ga   +     +++L +Av++  +e++++Ll
  MMETSP0890-20130614|33271_1 266 ANVNF--QrplakdfhlggllPIHAAVASGSLPLVQWLVQeldcpvDGAMALTAGTPPKSVLRIAVEHAATEILEWLL 341
                  55555..12244456777778*******************766555333332222566677****************9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.1e-06    0.0053       2      54 .]     283     341 ..     282     341 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.1e-06
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.des.....Gnt...aLhiAalrgnieilklLl 54 
                  l ++h a++sg l+lv++L++   ++++  d+      G++    L iA+++   eil++Ll
  MMETSP0890-20130614|33271_1 283 LLPIHAAVASGSLPLVQWLVQ---ELDCPvDGAmaltaGTPpksVLRIAVEHAATEILEWLL 341
                  568*****************7...77777765555555774666****************98 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   7.5       5.1   8.7e+03       2      33 ..     141     173 ..     140     185 .. 0.85
   2 ?   -2.5   0.0       2.3   3.9e+03      31      42 ..     298     309 ..     297     309 .. 0.82
   3 !   16.6  10.6   2.5e-06    0.0044       2      46 .]     450     491 ..     449     491 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.1
    PF13639.1   2 eCaiCldelsegeevvrlp.CgHvfHeeCldew 33 
                  +C  C  ++   ++++ ++ Cg   +++C  +w
  MMETSP0890-20130614|33271_1 141 SCGNCRHTFAVFRRCHHCRnCGLAVCSRCSVHW 173
                  7999*****87889999988*********9999 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.3
    PF13639.1  31 dewlrssnsCPl 42 
                   +wl +   CP+
  MMETSP0890-20130614|33271_1 298 VQWLVQELDCPV 309
                  589999999997 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 2.5e-06
    PF13639.1   2 eCaiCldelsegeevvrlpCgHv.fHeeCldewlrssnsCPlCrkp 46 
                  eC++C+++l  + ++   pCgH+ +++eC  ++     +CPlCr++
  MMETSP0890-20130614|33271_1 450 ECTVCFSPLIPEVRCALVPCGHTsCCQECAGSLA----TCPLCRTS 491
                  8********9999999******857799999998....5*****85 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0035       5.9       2      23 ..     282     303 ..     281     311 .. 0.83
   2 ?    5.0   0.0      0.02        33       4      24 ..     323     343 ..     321     348 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0035
    PF13606.1   2 GnTpLhlAasngrielveaLle 23 
                  G  p+h A+ +g++ lv++L++
  MMETSP0890-20130614|33271_1 282 GLLPIHAAVASGSLPLVQWLVQ 303
                  6789****************96 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.02
    PF13606.1   4 TpLhlAasngrielveaLlen 24 
                  ++L +A+++  +e++e+Ll+ 
  MMETSP0890-20130614|33271_1 323 SVLRIAVEHAATEILEWLLFT 343
                  57999*************985 PP

>> PF01529.15  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.4     0.007        12      45      72 ..     136     165 ..     124     168 .. 0.76
   2 ?    4.4   0.0     0.012        20      20      68 ..     423     478 ..     312     482 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.007
   PF01529.15  45 nnekrfCkkCqti..kpprshHCriCnkCv 72 
                  + +   C +C+       r+hHCr C+  v
  MMETSP0890-20130614|33271_1 136 EGKGGSCGNCRHTfaVFRRCHHCRNCGLAV 165
                  556667888887666889********9665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.012
   PF01529.15  20 qdesneeeedkeekqraiqteaelknnekrfCkk.......CqtikpprshHCriC 68 
                   +e++++++++e+kq ++++++++  +e  +C +       C ++ +  +  C++C
  MMETSP0890-20130614|33271_1 423 LAEQQSQSKQDETKQLNQEQKEDDAAKECTVCFSplipevrCALVPCGHTSCCQEC 478
                  45677777788888888888888888888888877777777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       933  (0.0682417); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:01.07
# Mc/sec: 1124.27
//
Query:       MMETSP0890-20130614|33283_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.3   0.1      0.034   13.6   0.1    1.3  1  PF07344.6 Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> PF07344.6  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   2.5e-06     0.034      56     108 ..     365     437 ..     344     442 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-06
    PF07344.6  56 prrrqrfraaeafsIisilvllaalllgvllllcc....................sslkwvclllnivsvvtl 108
                  ++rr+  r+ ea + is++v +aa+l  v+ll+c                       + ++cl+l++++++ l
  MMETSP0890-20130614|33283_1 365 AKRRHDARLNEARATISLIVIAAAILDLVVLLCCGplcfgaswasttnglarsspIFHAILCLTLVALGILAL 437
                  57888899****************999999999879999*********9999999889999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       880  (0.0643651); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:01.06
# Mc/sec: 1062.54
//
Query:       MMETSP0890-20130614|33287_1  [L=921]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-130  435.9   0.0   2.1e-130  435.4   0.0    1.1  1  PF05691.7  Raffinose synthase or seed inhibition protein Sip1
    0.00014   20.5   0.1    0.00028   19.6   0.0    1.4  1  PF02065.13 Melibiase


Domain annotation for each model (and alignments):
>> PF05691.7  Raffinose synthase or seed inhibition protein Sip1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.4   0.0  3.1e-134  2.1e-130      40     743 ..      68     899 ..      51     903 .. 0.85

  Alignments for each domain:
  == domain 1    score: 435.4 bits;  conditional E-value: 3.1e-134
    PF05691.7  40 asekGaflGftae.esksrlvvslGkl.kdlrflsifrfklWWstqwvGksGkdlqletqfilleskidsdetksyvvllPll..egsfrsalqpg...eddevei..cvesGstkvkessfksivyvh..vgdnP...felikeavkav...rvhlntfklleekklPs.ivdkfGWCtWdafyltvepegveeGlkelsdGGvpPrfviiddGWqsiesdekdpnedaknlvlegeqlaarltkfkenekfrkyeskkll..........................................................................................................seevsGlkalvkdlkeefkglddvyvWhalaGyWgGvrP..eateeleaklakpklspglkgtmedlavdkiveaglGlv.hPkkaeelydelhsylasaGvdGvkvdvihiletlgeeyGGrvelakayykaleksvaknfkgng....viasmehcndflflgtkqislgrvgddfylrdPagdpngvfwlqgvhivhvaynslflGeliqPdWdmfqslhpaaefhaasraisGgpiyvsdkvGkhnfdllkklvlpdGsilraelyalPtrdclfkdPlrdgksllkiwnlnkytG.vvGvfnCqGagWskeekknkifseasktltgsvraedveldsk.........keaaklekaee....vvvyl..kkseellllklksesleltleplefellsvsPvkklvsssvkfaPiGlvnmfnsgGavqeleveeekasvklevkGaGrflaysskkPkkckvdgeevefeydedglv 743
                  a  +Gafl f++  ++  r  v+lGkl +++r + + r k WW++       + +++etqf+l+e++ + +  k yvv+lPl+  +g+fr++l +    +d+++++    esG++++++s+ +s +++   ++++P   ++li+ ++k v    ++ n f+ l ekk+P+ ++  +GWCtWdafy  v+++ + +Gl+++++ G+  + +iiddGW ++++d +   + a++ + eg+ + + + + ++ e     ++++++                                                                                                           +   G+ +l++d+ke+f g+++v  Wha+aG+WgGv    +  + l  +  + k +p l++ ++ +a d  + +gl    +   ++ lyd+l++ l+++Gvd vk d ++ +  lg+++GG     + + +a+e++ +k f +n+    v  +m+h+++ l++     +++r++ddfy+rd  +      w    h++ +a+ns+f+  +  Pd+dmfqs h+a   haa+ra+sGgp+ +sd +G h+ d+lk ++lpdGs l ae +a+ t dc+f+d   d+++ lk+   n ++G v+Gvfn qG++Ws+++++++  +++s +l +s++ +d  +  +         ++a+ l+ +e+    ++ +   +++ ++l    k +sl   l+  +f +++++ +++  +  +++aPiGl+nm+n g av+e+  + e  sv++  kG G f  +s ++P+++ +d++ + f++ +d+l+
  MMETSP0890-20130614|33287_1  68 ADGNGAFLHFQTGgRDLARFDVALGKLpENIRTIGLSRIKRWWMAPSFN---NTVPVETQFLLIEIPYSIK-RKLYVVFLPLIseDGTFRCTLWNAakrNDKQIRLraRCESGDKNIRRSEVRSAMWIGglIANDPsacHDLIERGIKEVallXKEKNRFRPLVEKKIPKdVLSGLGWCTWDAFYSAVDAQDIVKGLDSIAQYGTRVQRLIIDDGWMQLDRDFE---HHASHNKDEGKAILSEVPSSQDIESSAAITEQSTKallsgvtltgesvsksaatylyqtkqeemrsfydafttyvqrlgattlgalysnivesgnddgiavtlwrwaatstplrnsliefyddhtdftrrlawpprphiskFNGIDGMYRLIQDAKEKF-GVKHVTCWHAVAGTWGGVSEsdDFSDPLRLERLHSKATPHLRHIEPSIAWDPASLKGLTTPtNSGAVSALYDDLYANLKECGVDAVKADAQSGVGPLGHKHGGGPMSVRMFVNAMENAAQKYFVDNDdalaVTNCMCHSTENLYS-YFSSAIARASDDFYPRDEGS------W--RFHLTACAFNSMFISTISFPDYDMFQSRHEAGWLHAAARAVSGGPVTLSDAPGLHDPDILKAIALPDGSTLLAEAPARLTGDCIFNDVTSDQRTPLKLVAPNACGGaVIGVFNVQGSTWSRQNRRFEQDNDSSCNLKASIHLNDALTAYQhplmkddtaAAASALAISEDspfvAIAFDphNSRPKILHDFRKKKSLTHNLDAGDFAVYTLARIRTAHN-DIHWAPIGLINMLNGGAAVREVINKPEDDSVEILAKGPGTFAIFSESRPERILIDDVPIRFNF-HDHLL 899
                  456899***9998356678899*****6789*************98765...67*************6665.88*********55589****976411133455542257*****************954489999666789*9999876222578899*********9747899********************************************99988...566677777777767665555444443333333334569***************************************************************************************************97547789*************.******************98333344445555678999***************9998766413446889************************************9*****************99965555789***********.88899************999......5..68******************************************************************************************************99799********************************999754433111111110222223333332211233422234556666667899********************9998.7*********************999999***********************************.45555 PP

>> PF02065.13  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     4e-08   0.00028      37      84 ..     233     282 ..     206     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4e-08
   PF02065.13  37 aekerpvllnnWeavyfdfnedklleladeakdlG..velfvlDDgWfge 84 
                  ++    + + +W+a+y  ++++ +++ +d +++ G  v+++++DDgW + 
  MMETSP0890-20130614|33287_1 233 KDVLSGLGWCTWDAFYSAVDAQDIVKGLDSIAQYGtrVQRLIIDDGWMQL 282
                  4455678899*************************66789*******874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.36u 0.39s 00:00:01.75 Elapsed: 00:00:01.19
# Mc/sec: 1854.66
//
Query:       MMETSP0890-20130614|33294_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      114  (0.00833821); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.80
# Mc/sec: 356.46
//
Query:       MMETSP0890-20130614|33297_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-11   43.7   0.2    5.9e-11   42.6   0.1    1.6  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    1.6e-08   34.6   0.1    2.9e-08   33.8   0.1    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
     0.0003   20.9   8.4     0.0003   20.9   5.8    2.3  3  PF01549.19 ShK domain-like
  ------ inclusion threshold ------
      0.024   14.4   0.1      0.056   13.1   0.1    1.5  1  PF13532.1  2OG-Fe(II) oxygenase superfamily
      0.025   14.0   0.2      0.061   12.8   0.1    1.6  1  PF13661.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   2.2e-14   5.9e-11       2     100 .]     347     451 ..     346     451 .. 0.96

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2.2e-14
    PF13640.1   2 qlnrygpggflspHvDnse......sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFks..........drslHrvtpvgaqgrrlaitgwft 100
                  q+ ry++ ++++ H+D s+      s++r++t++lyl+d e   eGG++e+   + ++g + +v+     pk+g+++ ++s           r+ H + pv  qg+++a ++w++
  MMETSP0890-20130614|33297_1 347 QVLRYTKDQYYRTHHDMSYndnnlaSGPRIYTFFLYLSDVE---EGGHTEFPSLK-FNGTSLKVK-----PKQGTALWWPSvqdldptrqdPRTRHTANPV-IQGTKFAANAWIH 451
                  799**************99*******************999...********888.99*******.....************9999999999*********.***********86 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1     1e-11   2.9e-08       2      98 ..     343     451 ..     342     452 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1e-11
                  -SEEEEEEEES--E-EEEEEEEESS.........SCEEEEEEE....T--EEEEEE-EE.SCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   2 peqlrvnrYpppekglglgpHtDne.........nriltillq....ddggglqfrked.kwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                  +e+++v+rY    k++ ++ H+D +          ri+t+ l+    ++gg ++f+  + + ++ +++p+ + ++ + +v  + +  ++++++H + p+ +g++++++ +++
  MMETSP0890-20130614|33297_1 343 YESFQVLRYT---KDQYYRTHHDMSyndnnlasgPRIYTFFLYlsdvEEGGHTEFPSLKfNGTSLKVKPKqGTALWWPSVQDLDPTRQDPRTRHTANPVIQGTKFAANAWIH 451
                  6899******...*******************************************999*788888888878999999988889999***********************97 PP

>> PF01549.19  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       2.2   5.9e+03      32      38 .]       1       7 [.       1       7 [. 0.83
   2 !   20.9   5.8   1.1e-07    0.0003       2      38 .]     151     186 ..     150     186 .. 0.94
   3 ?   -2.3   0.1         2   5.3e+03      14      21 ..     316     322 ..     310     330 .. 0.51

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.2
   PF01549.19 32 pktCgfC 38
                 p +C++C
  MMETSP0890-20130614|33297_1  1 PMSCKIC 7 
                 569***9 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.1e-07
   PF01549.19   2 CvDpn.sdCaawasngfCnnsayqdlmkqnCpktCgfC 38 
                  C D+   +Ca+ a++g+C +s+   +m   Cpk+C  C
  MMETSP0890-20130614|33297_1 151 CRDKEnLNCARRAAAGECASSP--GWMIMMCPKSCDSC 186
                  8887779***************..*************9 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2
   PF01549.19  14 sngfCnns 21 
                  +n  C+++
  MMETSP0890-20130614|33297_1 316 NN-RCEKT 322
                  22.24444 PP

>> PF13532.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.1e-05     0.056       3     116 ..     263     364 ..     262     372 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.1e-05
    PF13532.1   3 vlipnflsaeeqqellrelleeaplrqpttlg.grkvslqqtllgklgwvtdgkgyrysekksvdaepldpfpeallqlverlvkaagpeglepnaalVnfYregarmglHqDke 116
                  + i nfls++e+q++++ + +++   + t +g   k+ +q++++            r se+ +   ++ ++ pe   ++++r+++ +g+++ ++++  V +Y ++++   H D +
  MMETSP0890-20130614|33297_1 263 LTIDNFLSKDEAQAIINAVSHSFS--RSTDQGaVDKFGEQRKVV----SS-----GRTSEN-AWCNNRCEKTPE-TIAVMNRIAAVTGVPTENYESFQVLRYTKDQYYRTHHDMS 364
                  57899************9995554..444443245566665543....22.....333333.444556677777.667999999999**************************98 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.2e-05     0.061      11      61 ..     344     394 ..     331     396 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.2e-05
    PF13661.1  11 hrfaltratrgdffdpHiDadpsql...gkprflsallYLNedwdadfdGgtlf 61 
                  ++f+  r+t+++++  H D+  ++      pr +++ lYL+   d++++G+t f
  MMETSP0890-20130614|33297_1 344 ESFQVLRYTKDQYYRTHHDMSYNDNnlaSGPRIYTFFLYLS---DVEEGGHTEF 394
                  678999****************99999**************...9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.42s 00:00:01.18 Elapsed: 00:00:00.87
# Mc/sec: 1289.07
//
Query:       MMETSP0890-20130614|33305_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-23   81.1   0.1    1.1e-22   80.7   0.1    1.2  1  PF13621.1  Cupin-like domain
      2e-18   66.0   0.0    3.9e-18   65.1   0.0    1.5  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    0.00086   19.4   0.0     0.0016   18.5   0.0    1.5  1  PF02373.17 JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.1   2.3e-26   1.1e-22     114     243 ..     282     439 ..     191     443 .] 0.74

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 2.3e-26
    PF13621.1 114 edsdlpfapelfgkk.peavn...............lWlGnsasssslHhDh..yeNlycvvsGrKrftLfppsdapklyva.........slee....sgtsvssvdvenpdlekfprfkdakalevelepGevLYlPalWfHeVsssseegvhiavnyw 243
                  +d+++++   lfg+  ++av                +++G+ +++++lH+D   ++  +++++G+K  + f+p+dap+ly+          +  +    s +++s +d+ np+l+k+p++k+a ++ + l +Ge L lP+ W+H  +s+s++ ++++ n+w
  MMETSP0890-20130614|33305_1 282 TDFEIEVNALLFGRDdKKAVSracanaqansdklnkVFIGPAGATTRLHQDNhgAHARLTMLKGSKLYIAFHPQDAPNLYPPsasyiaenqT--PrtasSTSHYSPIDPLNPNLDKYPNYKHATPYLALLTEGESLLLPKNWWHCAYSLSPS-ITVMRNFW 439
                  345555555555555333333555556666777777***************9888999*********************9887777766540..145556778999*******************************************544.67777877 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   8.5e-22   3.9e-18      13      93 ..       2      84 ..       1      85 [. 0.96

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 8.5e-22
                 EEEEEEE..---EEEETTT..TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEE CS
   PF00254.23 13 vhyegkle.dgtvfdssys..rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevel 93
                 +hy+g+l   g vfd+s+s   + pfef+vG+g v++g+++++  ++ Ge ++ ++pp+ +Yg++g+ +  ip n  ++f+v l
  MMETSP0890-20130614|33305_1  2 IHYTGRLVhSGCVFDGSRSknGGVPFEFTVGDGSVVPGMDDAVRAISLGEACRARVPPSRGYGQNGV-HRLIPCNTAIIFDVIL 84
                 9******879*******998899********************************************.879**********977 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.5e-07    0.0016       2     114 .]     318     438 ..     317     438 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.5e-07
                  EEEE-TT-EE-CE--GGG-EEEEEEEEE-EEEEEEE-TTCHHHHH....HHHCH-.HH---TTG.HHCCHCCCHHHH...HHHCCG--EEEEE----EEEE----EEEEEEEEEEEEEEEEE CS
   PF02373.17   2 lylgmpksttpwhiedqglySinylhfgapkvWyivpsekkekle....kvlskk.nskeqpdl.lrhlstlispkq...lekagipvyrfvqkpgefVfvfpgayHsvfnlgfniaeavnf 114
                  +++g+ ++tt+ h++++g + +  + ++++k   +++++++  l     + + ++   + ++++ ++   + ++p+      ++   +y     +ge +  + +++H + +l  +i +  nf
  MMETSP0890-20130614|33305_1 318 VFIGPAGATTRLHQDNHGAH-ARLTMLKGSKLYIAFHPQDAPNLYppsaSYIAENqTPRTASSTsHYSPIDPLNPNLdkyPNYKHATPYLALLTEGESLLLPKNWWHCAYSLSPSITVMRNF 438
                  799*****************.9********************9998877444444223334444455555667777776644455678889999*******************999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.76
# Mc/sec: 1396.82
//
Query:       MMETSP0890-20130614|33324_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.98
# Mc/sec: 376.57
//
Query:       MMETSP0890-20130614|33323_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 822.75
//
Query:       MMETSP0890-20130614|33316_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-42  143.3   8.3    1.1e-13   50.4   0.1    3.2  3  PF00013.24 KH domain
    7.4e-34  114.7   6.2    1.7e-10   40.2   0.3    3.9  4  PF13014.1  KH domain
    4.3e-14   51.7   4.1    0.00015   21.1   0.1    3.4  3  PF07650.12 KH domain
    2.3e-10   39.8   2.1    0.00032   20.1   0.1    3.4  3  PF13083.1  KH domain
      1e-06   28.2   2.3      0.073   12.7   0.2    3.4  3  PF13184.1  NusA-like KH domain
  ------ inclusion threshold ------
       0.01   15.1   0.2         14    5.0   0.0    3.3  3  PF00692.14 dUTPase


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.3   1.9e-16   4.2e-13       3      58 .]      35     103 ..      33     103 .. 0.86
   2 !   50.4   0.1     5e-17   1.1e-13       4      58 .]     124     186 ..     121     186 .. 0.90
   3 !   48.6   0.1   1.8e-16   4.2e-13       3      58 .]     207     270 ..     205     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.9e-16
                  EEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S..............E.EEEEEESHHHHHHHHHHH CS
   PF00013.24   3 rvkvpnskigriIGkgGsnIkeIeeetgakIdvpkd..............rdtvtisGdpesvekAkkli 58 
                  + ++pns++g +IG+gG+nIk+I  e g++I++ k+              r  + ++G+   +++A++ i
  MMETSP0890-20130614|33316_1  35 ECRIPNSLVGLVIGRGGENIKRIAAELGVRIQIAKEaepqdisppqeppmR-RIALTGSERGIDRARNEI 103
                  568******************************555566667777777666.**************9876 PP

  == domain 2    score: 50.4 bits;  conditional E-value: 5e-17
                  EEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S........E.EEEEEE.SHHHHHHHHHHH CS
   PF00013.24   4 vkvpnskigriIGkgGsnIkeIeeetgakIdvpkd........rdtvtisG.dpesvekAkkli 58 
                  +k+pn+k+g +IGk G +I+ I+e+tg++++vp+         r t ++ + ++++++ Ak+ i
  MMETSP0890-20130614|33316_1 124 LKIPNDKVGLVIGKAGTTIRSIQERTGVTVKVPPAadaddpnsR-TLELCAdTQQQIHVAKNEI 186
                  79******************************777888766556.******9********9876 PP

  == domain 3    score: 48.6 bits;  conditional E-value: 1.8e-16
                  EEEEECCCCHHH---TTHHHHHHHHHHT-EEEE--S.........E.EEEEEESHHHHHHHHHHH CS
   PF00013.24   3 rvkvpnskigriIGkgGsnIkeIeeetgakIdvpkd.........rdtvtisGdpesvekAkkli 58 
                   + +p+  +g iIGkgG++I++I++ tg++I++p++         r +  i+G+p++ ++A++ i
  MMETSP0890-20130614|33316_1 207 IFPCPEGCVGLIIGKGGETIHKIQNATGIRIQIPPSpdpnsnppmR-MLGIIGSPQARQQAIFEI 270
                  6789*****************************6666788887677.**************9876 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   1.8e-12     4e-09       1      34 [.      42      82 ..      42      91 .. 0.78
   2 !   39.5   0.0   1.2e-13   2.8e-10       1      39 [.     130     169 ..     130     172 .. 0.87
   3 !   40.2   0.3   7.5e-14   1.7e-10       2      35 ..     215     248 ..     214     252 .. 0.89
   4 ?   -1.9   0.0       1.1   2.6e+03      23      33 ..     397     408 ..     397     411 .. 0.71

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.8e-12
    PF13014.1  1 lvgliIGkgGetIkeIreetGakIrfpk.......easpgs 34
                 lvgl+IG+gGe+Ik+I +e G++I+++k       ++ +++
  MMETSP0890-20130614|33316_1 42 LVGLVIGRGGENIKRIAAELGVRIQIAKeaepqdiSPPQEP 82
                 69**************************7666655555555 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 1.2e-13
    PF13014.1   1 lvgliIGkgGetIkeIreetGakIrfpk.easpgsnerei 39 
                  +vgl+IGk G tI++I+e+tG+ +++p+   ++++n+r+ 
  MMETSP0890-20130614|33316_1 130 KVGLVIGKAGTTIRSIQERTGVTVKVPPaADADDPNSRTL 169
                  69**************************866677777776 PP

  == domain 3    score: 40.2 bits;  conditional E-value: 7.5e-14
    PF13014.1   2 vgliIGkgGetIkeIreetGakIrfpkeaspgsn 35 
                  vgliIGkgGetI +I++ tG +I++p++++p+sn
  MMETSP0890-20130614|33316_1 215 VGLIIGKGGETIHKIQNATGIRIQIPPSPDPNSN 248
                  8**************************6666665 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.1
    PF13014.1  23 kIrfpk.easpg 33 
                  +I+ p+ +a+pg
  MMETSP0890-20130614|33316_1 397 HIQLPPpGAEPG 408
                  8*****655555 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   6.5e-08   0.00015      34      59 ..      41      66 ..      34      73 .. 0.88
   2 !   13.5   0.1   1.5e-05     0.034      26      55 ..     121     150 ..      96     159 .. 0.84
   3 !   16.7   0.0   1.5e-06    0.0035      33      59 ..     212     238 ..     185     243 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.5e-08
                 SCCCCC------HHHHHHHHHHHHCH CS
   PF07650.12 34 sqpgivIGkgGsnikklgkelrkrie 59
                 s  g+vIG+gG+nik++ +el+ ri+
  MMETSP0890-20130614|33316_1 41 SLVGLVIGRGGENIKRIAAELGVRIQ 66
                 668*******************9996 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.5e-05
                  EEEEEEEESCCCCC------HHHHHHHHHH CS
   PF07650.12  26 rviiviresqpgivIGkgGsnikklgkelr 55 
                   + + i + + g+vIGk G +i++++++ +
  MMETSP0890-20130614|33316_1 121 SIALKIPNDKVGLVIGKAGTTIRSIQERTG 150
                  56667778899***************9876 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.5e-06
                  ESCCCCC------HHHHHHHHHHHHCH CS
   PF07650.12  33 esqpgivIGkgGsnikklgkelrkrie 59 
                  e+  g++IGkgG++i k++++ + ri+
  MMETSP0890-20130614|33316_1 212 EGCVGLIIGKGGETIHKIQNATGIRIQ 238
                  6789****************9998885 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00079       1.8      26      52 ..      29      55 ..      19      57 .. 0.82
   2 !   20.1   0.1   1.4e-07   0.00032      27      55 ..     118     146 ..     111     150 .. 0.90
   3 !    9.2   0.1   0.00035       0.8      39      55 ..     214     230 ..     209     235 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00079
    PF13083.1 26 enertinlnvdgedlGrlIGkrGktld 52
                 + e+t++ ++  + +G++IG+ G++++
  MMETSP0890-20130614|33316_1 29 QGETTFECRIPNSLVGLVIGRGGENIK 55
                 566778888888899*********997 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.4e-07
    PF13083.1  27 nertinlnvdgedlGrlIGkrGktldALq 55 
                  + + i l++  +++G++IGk G t++++q
  MMETSP0890-20130614|33316_1 118 SAESIALKIPNDKVGLVIGKAGTTIRSIQ 146
                  5678999*********************9 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00035
    PF13083.1  39 dlGrlIGkrGktldALq 55 
                   +G++IGk G+t+  +q
  MMETSP0890-20130614|33316_1 214 CVGLIIGKGGETIHKIQ 230
                  58**********98777 PP

>> PF13184.1  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   3.2e-05     0.073      19      49 ..      43      72 ..      40      76 .. 0.91
   2 !    6.1   0.0    0.0037       8.5      17      39 ..     129     150 ..     121     171 .. 0.85
   3 !    7.3   0.0    0.0016       3.7      19      44 ..     215     239 ..     213     246 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.2e-05
    PF13184.1 19 vgaivgkkgsrikaisseLngekidvvewse 49
                 vg  +g++g++ik i  eL g +i++ ++ e
  MMETSP0890-20130614|33316_1 43 VGLVIGRGGENIKRIAAEL-GVRIQIAKEAE 72
                 899****************.******98865 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0037
    PF13184.1  17 DpvgaivgkkgsrikaisseLng 39 
                  D vg  +gk g+ i++i++   g
  MMETSP0890-20130614|33316_1 129 DKVGLVIGKAGTTIRSIQERT-G 150
                  89***************9976.5 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0016
    PF13184.1  19 vgaivgkkgsrikaisseLngekidv 44 
                  vg i+gk+g+ i++i++   g +i++
  MMETSP0890-20130614|33316_1 215 VGLIIGKGGETIHKIQNAT-GIRIQI 239
                  89***************99.999986 PP

>> PF00692.14  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.006        14      25      61 ..      21      57 ..      16      63 .. 0.80
   2 ?    0.7   0.0      0.13     3e+02      38      67 ..     122     151 ..     120     154 .. 0.85
   3 ?    5.0   0.0    0.0063        14      35      61 ..     203     229 ..     192     236 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.006
                 EEETTEEEEEE--EEEE---TEEEEEE-----CCCH- CS
   PF00692.14 25 tlkpgetvlvptdlsislpkgtaglilgrsslaakgl 61
                 +++p  ++  +t+  + +p++++gl++gr++ + k +
  MMETSP0890-20130614|33316_1 21 MVTPSIPKQGETTFECRIPNSLVGLVIGRGGENIKRI 57
                 5666677777899999**************9877765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.13
                  EEEE---TEEEEEE-----CCCH-EE---- CS
   PF00692.14  38 lsislpkgtaglilgrsslaakglivlpgi 67 
                  + +++p++ +gl++g+ + + + ++  +g+
  MMETSP0890-20130614|33316_1 122 IALKIPNDKVGLVIGKAGTTIRSIQERTGV 151
                  67899*************998888777766 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0063
                  E--EEEE---TEEEEEE-----CCCH- CS
   PF00692.14  35 ptdlsislpkgtaglilgrsslaakgl 61 
                  p   ++++p+g++gli+g+++ +   +
  MMETSP0890-20130614|33316_1 203 PSSEIFPCPEGCVGLIIGKGGETIHKI 229
                  5667899************99666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.86
# Mc/sec: 1223.26
//
Query:       MMETSP0890-20130614|33333_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       622  (0.0454944); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.89
# Mc/sec: 428.11
//
Query:       MMETSP0890-20130614|33346_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-20   72.5   0.0    4.2e-20   71.9   0.0    1.3  1  PF08241.7  Methyltransferase domain
    3.2e-11   42.6   0.0    4.7e-11   42.1   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
      5e-10   39.6   0.0    8.2e-10   38.9   0.0    1.3  1  PF08242.7  Methyltransferase domain
    1.3e-09   37.8   0.0    3.9e-09   36.2   0.0    1.5  2  PF13489.1  Methyltransferase domain
    7.5e-09   35.2   0.0    1.7e-08   34.1   0.0    1.5  1  PF13847.1  Methyltransferase domain
    1.9e-08   34.5   0.0    3.2e-08   33.7   0.0    1.3  1  PF13649.1  Methyltransferase domain
    2.4e-06   27.9   0.0      1e-05   25.9   0.0    1.9  2  PF12847.2  Methyltransferase domain
     0.0017   17.6   0.0     0.0034   16.6   0.0    1.4  1  PF07021.7  Methionine biosynthesis protein MetW
     0.0099   15.7   0.0      0.015   15.1   0.0    1.4  1  PF13659.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   2.8e-23   4.2e-20       1      89 [.      27     111 ..      27     120 .. 0.97

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 2.8e-23
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkp 89 
                  L+vG+Gtgl++ +l+    +++t vDlse mla+ak +l++ +  + vada +lpf+dn+fD v+ +++l+ +++p  +l+e++Rv+k+
  MMETSP0890-20130614|33346_1  27 LEVGAGTGLNAPWLRMV--SSLTLVDLSEGMLAQAKIKLPDAK--YYVADAANLPFPDNYFDTVLETFCLCVVDNPYTVLREMHRVVKK 111
                  89***************..**********************98..******************************************97 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.1e-14   4.7e-11      50     167 ..      25     136 ..      10     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 3.1e-14
   PF01209.13  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkp...GGrlvvlefskvelpllsqaye 167
                   vl+v +Gtg  a   +++      ++++D++e mL +++ kl +      ++ +a+a +Lpf d+ fD+v  +f l  v +  ++L+e++rv+k     G++++l+ s++++pl+s+  +
  MMETSP0890-20130614|33346_1  25 AVLEVGAGTGLNAP-WLRM---VSSLTLVDLSEGMLAQAKIKLPDA-----KYYVADAANLPFPDNYFDTVLETFCLCVVDNPYTVLREMHRVVKKqpnSGKIIILDNSRPKNPLVSTILD 136
                  66777777774433.3333...346899********9999998765.....6789***************************************953347**************9987665 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   5.4e-13   8.2e-10       1      95 [.      27     111 ..      27     113 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 5.4e-13
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkp 95 
                  Le+G+GtG ++  l++    +++t vD+s+ ++++ak kl + + + +++ nl   d       ++fD+v+  ++l +++++  vl+++++++k+
  MMETSP0890-20130614|33346_1  27 LEVGAGTGLNAPWLRMV---SSLTLVDLSEGMLAQAKIKLPDAKYYVADAANLPFPD-------NYFDTVLETFCLCVVDNPYTVLREMHRVVKK 111
                  8**************99...*************************999999999999.......4***************************986 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.6e-12   3.9e-09      15     114 ..      16     120 ..       9     130 .. 0.80
   2 ?   -1.1   0.0      0.79   1.2e+03      19      34 ..     127     142 ..     120     176 .. 0.67

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.6e-12
    PF13489.1  15 rllarlkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.akqaqksqfdeedaae...pagkfdlivarevlehvpdpeellrqiaellk..pg.Gylll 114
                  r +  ++++g vL++G+GtG +++ l+    ++t vD+s+ +    +++ ++  ++  daa+   p++ fd+++ +++l+ v++p  +lr++++ +k  p+ G +++
  MMETSP0890-20130614|33346_1  16 RYVG-ENARGAVLEVGAGTGLNAPWLR-MVSSLTLVDLSEGMLAQaKIKLPDAKYYVADAANlpfPDNYFDTVLETFCLCVVDNPYTVLREMHRVVKkqPNsGKIII 120
                  5554.68999************99775.4579******988888797777777777777555555******************************994433455555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.79
    PF13489.1  19 rlkpggrvLDiGcGtG 34 
                  +++   ++LD+G+ t 
  MMETSP0890-20130614|33346_1 127 KNPLVSTILDLGAATQ 142
                  4556679999998875 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.1e-11   1.7e-08       6     112 ..      25     124 ..      20     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.1e-11
    PF13847.1   6 kvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpg...grlivesps 112
                   vl++G+GtG  +  l  ++   + ++++D se +++ Ak      ++  ++++++d+ +l+  ++ + fD v+    l+ + +p  vl+e++rv+k++   g++i+ + s
  MMETSP0890-20130614|33346_1  25 AVLEVGAGTGLNAPWLR-MV---SSLTLVDLSEGMLAQAKI-----KLPDAKYYVADAANLP--FPdNYFDTVLETFCLCVVDNPYTVLREMHRVVKKQpnsGKIIILDNS 124
                  69*******99988888.65...56****************.....69999***********..************999******************86444555555554 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   2.1e-11   3.2e-08       1      98 [.      26     110 ..      26     112 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 2.1e-11
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlk 98 
                  +l++G G+G ++  l  ++     +++++vD+se +l++ak +l    +++k+++ada +lpf+++ fd v+   + l+ ++++ ++  l+e+ rv+k
  MMETSP0890-20130614|33346_1  26 VLEVGAGTGLNAPWLR-MV-----SSLTLVDLSEGMLAQAKIKL----PDAKYYVADAANLPFPDNYFDTVLETFC-LCVVDNPYTV--LREMHRVVK 110
                  79******97777775.54.....9*******************....9***********************9888.8888887765..888888887 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.6e-09     1e-05       3     104 ..      24     112 ..      22     123 .. 0.82
   2 ?   -0.8   0.0       1.3     2e+03       4      12 ..     133     141 ..     132     161 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 6.6e-09
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkgltldallal.deprrvlealpkllkpg 104
                  + +l++G+GtG+  + ++r    + ++ vD+se++l++a+ ++      +  +++ +da  +l + ++ fD vl         l++ d+p  vl+++++ +k++
  MMETSP0890-20130614|33346_1  24 GAVLEVGAGTGLN-APWLR--MVSSLTLVDLSEGMLAQAKIKL------PDAKYYVADA-ANLPFPDNyFDTVLETF-----CLCVvDNPYTVLREMHRVVKKQ 112
                  469********99.77777..7999***************999......8899999999.55555555799999988.....7777899999999999988853 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.3
    PF12847.2   4 rilDlGcGt 12 
                  +ilDlG+ t
  MMETSP0890-20130614|33346_1 133 TILDLGAAT 141
                  699***987 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.2e-06    0.0034      14     104 ..      23     111 ..      13     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.2e-06
    PF07021.7  14 gsrvldlGcGdGellellkeekqvdgrG.leldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigrr 104
                  +  vl++G+G G    +l+    v++   ++l+e  +a++  k        +d     f+d+ fd v+ +  l  + np +vl+e+ r+ ++
  MMETSP0890-20130614|33346_1  23 RGAVLEVGAGTGLNAPWLRM---VSSLTlVDLSEGMLAQAKIKLPDAKYYVADAANLPFPDNYFDTVLETFCLCVVDNPYTVLREMHRVVKK 111
                  56799999999999999965...55544146666666777777666777778888889******************************9887 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05     0.015       3      93 ..      25     139 ..      23     163 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-05
    PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellra.......gsfdlvvtnpPygpragaraalrd...........................l 93 
                   vl++g+G+G  + ++ + + + l+ v+l++  +a a+ +l+ a+        ++d+++l+  +++       + f l+v + Py+   ++++  ++                            
  MMETSP0890-20130614|33346_1  25 AVLEVGAGTGLNAPWLRM-V-SSLTLVDLSEGMLAQAKIKLPDAKY------YVADAANLP--FPDnyfdtvlETFCLCVVDNPYTVLREMHRVVKKqpnsgkiiildnsrpknplvstildlgA 139
                  69********98877665.5.7*******************99866......89******8..88833333445577777888887666666544444455555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:01.85
# Mc/sec: 244.82
//
Query:       MMETSP0890-20130614|33358_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-06   26.2   1.6    0.00015   21.1   0.2    2.6  2  PF12799.2  Leucine Rich repeats (2 copies)
    4.1e-05   22.9   0.9        0.2   11.6   0.0    3.5  3  PF00560.28 Leucine Rich Repeat
    4.5e-05   23.0   0.7    0.00059   19.4   0.1    2.4  2  PF13855.1  Leucine rich repeat
    0.00074   19.2   0.6        4.2    7.8   0.0    3.5  3  PF13504.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.056   13.4   0.1        3.5    7.8   0.0    2.7  2  PF13516.1  Leucine Rich repeat
        2.1    8.4   4.6       0.54   10.3   0.1    2.1  2  PF03720.10 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   6.8e-08   0.00015       2      36 ..       5      42 ..       4      56 .. 0.88
   2 ?    3.9   0.0     0.016        38      15      36 ..      69      91 ..      54     108 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.8e-08
    PF12799.2  2 nLevLdLsnNnIkd.lpp.elanLpnLktLnLsnN.pi 36
                 nL+vL L +N ++  +p  ela Lp+L+ L+L +N ++
  MMETSP0890-20130614|33358_1  5 NLRVLRLGGNDLSGpIPSrELAALPSLQKLSLWGNtNL 42
                 9************7699878************999455 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.016
    PF12799.2 15 dlppelanLpnLktLnLsnN.pi 36
                 dl + l n p+Lk L+   N ++
  MMETSP0890-20130614|33358_1 69 DLAHILRNAPKLKRLHAGENtQL 91
                 567778999******99766355 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   8.7e-05       0.2       1      22 []       5      28 ..       5      28 .. 0.90
   2 !    7.4   0.0    0.0021       4.8       1      16 [.      30      47 ..      30      56 .. 0.84
   3 ?   -0.3   0.0      0.73   1.7e+03       1      17 [.      79      96 ..      79     101 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.7e-05
                 TESEEEETSSBCB.CHHHH.HHHH CS
   PF00560.28  1 nLeeLdLsgNnlt.slpps.lsnL 22
                 nL++L L gN l+  +p++ l +L
  MMETSP0890-20130614|33358_1  5 NLRVLRLGGNDLSgPIPSReLAAL 28
                 8************99**9888765 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0021
                 TESEEEETSS.BCB.CHH CS
   PF00560.28  1 nLeeLdLsgN.nlt.slp 16
                 +L++L+L gN nlt  l 
  MMETSP0890-20130614|33358_1 30 SLQKLSLWGNtNLTgPLA 47
                 79***********96654 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.73
                 TESEEEETSS.BCBCHHH CS
   PF00560.28  1 nLeeLdLsgN.nltslpp 17
                 +L++L+   N +l+ +++
  MMETSP0890-20130614|33358_1 79 KLKRLHAGENtQLQLFSS 96
                 699999999999997665 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.6e-07   0.00059      25      59 ..       4      39 ..       1      42 [. 0.91
   2 ?    1.6   0.0     0.094   2.1e+02      19      54 ..      72     107 ..      52     111 .. 0.53

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.6e-07
    PF13855.1 25 snLkvLdLsgnnlk.sispeafkgLpsLreLnLsgN 59
                  nL+vL L+gn l+  i+++ ++ LpsL++L+L+gN
  MMETSP0890-20130614|33358_1  4 RNLRVLRLGGNDLSgPIPSRELAALPSLQKLSLWGN 39
                 79***********6499*****************99 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.094
    PF13855.1  19 gaFkglsnLkvLdLs.gnnlksispeafkgLpsLreL 54 
                  +++ + ++Lk L  + ++ l+ +s+ +  +L s r+L
  MMETSP0890-20130614|33358_1  72 HILRNAPKLKRLHAGeNTQLQLFSSSS-PSLDSMRSL 107
                  667777777777777555556665544.444444444 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0018       4.2       2      14 ..       5      17 ..       4      21 .. 0.87
   2 !    7.4   0.0    0.0025       5.7       1      14 [.      29      43 ..      29      48 .. 0.87
   3 ?   -1.4   0.0       2.1   4.8e+03       1      11 [.      78      88 ..      78      96 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0018
    PF13504.1  2 nLkeLdLsgnrLt 14
                 nL++L+L gn+L 
  MMETSP0890-20130614|33358_1  5 NLRVLRLGGNDLS 17
                 9*********986 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0025
    PF13504.1  1 pnLkeLdLsgnr.Lt 14
                 p+L++L+L+gn  Lt
  MMETSP0890-20130614|33358_1 29 PSLQKLSLWGNTnLT 43
                 79********97687 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2.1
    PF13504.1  1 pnLkeLdLsgn 11
                 p+Lk+L+   n
  MMETSP0890-20130614|33358_1 78 PKLKRLHAGEN 88
                 68999987665 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0015       3.5       2      18 ..       4      20 ..       3      27 .. 0.84
   2 ?    2.5   0.1      0.08   1.8e+02       1      16 [.      28      44 ..      28      51 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0015
    PF13516.1  2 knLtsLdLsnNqigdeG 18
                  nL++L+L++N++++  
  MMETSP0890-20130614|33358_1  4 RNLRVLRLGGNDLSGPI 20
                 69***********9865 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.08
    PF13516.1  1 lknLtsLdL.snNqigd 16
                 l++L+ L L +n+++++
  MMETSP0890-20130614|33358_1 28 LPSLQKLSLwGNTNLTG 44
                 799*****955667876 PP

>> PF03720.10  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00024      0.54       1      79 [.     108     196 ..     108     210 .. 0.91
   2 ?   -1.0   0.6      0.78   1.8e+03      67      67 ..     273     273 ..     221     305 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00024
   PF03720.10   1 avlGlaFKkntdDlReSpaldiieeLleegaevkiyDPkvkeeaaealle..........eknvelvsdleealkgadaiviltehdef 79 
                  a++G++ K+  +D+ +S + + + e    ga+ ++  P +k+++++++++          ek+v+  ++l+ea+++  a  i+t+ +  
  MMETSP0890-20130614|33358_1 108 ALWGITSKAALEDTAQSVVANFLSEPVLLGAQFDTIIPPTKHDKKSHEKKsyhnrkkydnEKRVQHKQKLNEAADKRRAKRIATQKNSM 196
                  78************************9*****999999999999999888999*******99**************9999999988765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.78
   PF03720.10  67 a 67 
                  a
  MMETSP0890-20130614|33358_1 273 A 273
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1993  (0.145772); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:01.22
# Mc/sec: 608.91
//
Query:       MMETSP0890-20130614|33349_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.36s 00:00:00.84 Elapsed: 00:00:01.48
# Mc/sec: 393.46
//
Query:       MMETSP0890-20130614|33352_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-12   45.9  40.1    3.5e-12   45.6  27.8    1.1  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.11   11.1   0.3        0.2   10.3   0.2    1.3  1  PF08491.5  Squalene epoxidase


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6  27.8   5.2e-16   3.5e-12      41     352 ..      85     411 ..      42     413 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 5.2e-16
   PF07690.11  41 yslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg..................WravFlilailsllaavlvllllprepperkrkspaeelrkepaplvpawklllkppvl..w.illialllfffvfsg...........lltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGf.glglvfptllalasdlappeerGtasglfntagslggal 352
                    +++++a++ ++  s  fG r + +++ ll +++ ++++ +a +l  ++l+  +l G g g++++  + +   wfpk  rg ++gl+ +gf++G  +   lg+ l+  +g                  ++ +   lai+++la++l++  ++ ++ ++ ++ +++     ++p +++++l ++p+ l  w +     + + + +++           +   +p+    v g       ++++ +l+al++ ig+l++++ +d +g + + ++ +++ ++ ++++ ++a t  ++ + l++ +i+f  lg +f+t+ ++a+  ++pe +  +++l+ +a++++++ 
  MMETSP0890-20130614|33352_1  85 TIIFQMLAMPMGAQASKMFGTRTIAIFSGLLISIA-VYASsYAKNLKIFMLLYAALFGTGIGLGYTPPMIAGWTWFPK-SRGVVNGLVLLGFGAGGFIVNFLGSHLVNPGGkmiidpntgrfpdqlynkFPIMLRKLAIIYALATILGGSQVVSKRIDSVTP-SQKV---IHTPTSNGISLRKAPRTLtfWaL-----YAIIMLTASsgltsasiyklFANATPS--IAVAGDQ----FLAIVGALGALFNGIGRLACAAAVDTYGYKLPFFILVVVQATNTALYPFIART--SPTAFLASTCISFfLLGGIFSTSPTAAALAFGPETAPLIYSLMFSAFAFASVG 411
                  345666666666666667*****************.66665888888778888888888888899999999999****.****************************8888******************999999999999999887555554444444444.4455...78888886666666665543542.....222222222211112334434444444..4444444....444459********************************************999..55555577777787*********************************999875 PP

>> PF08491.5  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   2.9e-05       0.2     193     260 ..     343     411 ..     337     422 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.9e-05
    PF08491.5 193 vvnvLsialyklfaadsdelkalrkgCfdYlklGgecvsgpva..llsgllprPllLikhffavalysvl 260
                  vv    +aly  f+a ++    l ++C+ ++ lGg +++ p a  l  g +  Pl+    f a a+ sv 
  MMETSP0890-20130614|33352_1 343 VVQATNTALYP-FIARTSPTAFLASTCISFFLLGGIFSTSPTAaaLAFGPETAPLIYSLMFSAFAFASVG 411
                  66677789997.889999999****************999875215557777788888888899998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.37s 00:00:01.10 Elapsed: 00:00:00.74
# Mc/sec: 1376.29
//
Query:       MMETSP0890-20130614|33362_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-19   67.0   0.0    1.3e-18   66.2   0.0    1.4  1  PF04406.9 Type IIB DNA topoisomerase


Domain annotation for each model (and alignments):
>> PF04406.9  Type IIB DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   9.8e-23   1.3e-18       2      68 .]      93     159 ..      92     159 .. 0.98

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 9.8e-23
                  ----HHHH---HHHHHHTTSSTT----BHHHHHHHT----S----HHHHHHHHHHHS---GGGGT-B CS
    PF04406.9   2 vkqakklaqlllvlkiikealeenkvsTkRdlYYtdkelFkeQsesdrliedlevilglqReeLnvi 68 
                  +kq++k a l +vl++++e ++++ ++TkRdl+Ytd++lF +Q+ sd + ed ++++g++R+ L+v+
  MMETSP0890-20130614|33362_1  93 AKQVRKTALLARVLSLVHEVIRKGIHVTKRDLFYTDVKLFVKQEDSDGVLEDAACMIGCPRNCLHVV 159
                  689**************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:01.07
# Mc/sec: 857.76
//
Query:       MMETSP0890-20130614|33367_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.075   13.1   1.2       0.17   12.0   0.4    1.8  2  PF07319.6  Primosomal protein DnaI N-terminus
        9.3    6.8   7.2        1.9    9.0   0.1    3.3  3  PF02370.11 M protein repeat


Domain annotation for each model (and alignments):
>> PF07319.6  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.28   1.9e+03       3      28 ..      10      35 ..       8      45 .. 0.66
   2 ?   12.0   0.4   2.4e-05      0.17      15      48 ..      44      78 ..      32      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.28
                 -------------HHHHHHHHHHHHH CS
    PF07319.6  3 sigetlkkllkkrklekryeklkkev 28
                 +i+++l+k  ++r+l++  +kl  + 
  MMETSP0890-20130614|33367_1 10 EIKHVLTKPSSRRELQTLAKKLAIKA 35
                 67777777777777776666665554 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.4e-05
                 -HHHHHHHHHHHHHTT-HHHHHHHHHS.TTT--HH CS
    PF07319.6 15 rklekryeklkkevlkdpdVqaFlkeh.keeltqe 48
                 ++le r++ l ++vl+d+ V++F++++ +ee +++
  MMETSP0890-20130614|33367_1 44 QQLEARLQSLENAVLTDATVKEFVASEdQEEENKN 78
                 78999******************987613444444 PP

>> PF02370.11  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.6   4.1e+03      12      19 ..      23      30 ..      20      33 .. 0.48
   2 ?    9.0   0.1   0.00028       1.9       4      15 ..      44      55 ..      43      57 .. 0.91
   3 ?   -0.8   0.5      0.42   2.9e+03      12      20 ..      71      79 ..      70      79 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.6
   PF02370.11 12 eLeeelqa 19
                 eL++  ++
  MMETSP0890-20130614|33367_1 23 ELQTLAKK 30
                 34444443 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00028
   PF02370.11  4 keLEaelqeLee 15
                 ++LEa+lq Le+
  MMETSP0890-20130614|33367_1 44 QQLEARLQSLEN 55
                 9*********97 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.42
   PF02370.11 12 eLeeelqaL 20
                 ++eee+++L
  MMETSP0890-20130614|33367_1 71 DQEEENKNL 79
                 678888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.35s 00:00:00.86 Elapsed: 00:00:00.91
# Mc/sec: 484.54
//
Query:       MMETSP0890-20130614|33374_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.43s 00:00:00.85 Elapsed: 00:00:00.82
# Mc/sec: 409.13
//
Query:       MMETSP0890-20130614|33379_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.40s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 345.70
//
Query:       MMETSP0890-20130614|33378_1  [L=1108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   24.8   2.8     0.0024   17.2   0.0    2.4  2  PF08372.5  Plant phosphoribosyltransferase C-terminal
    0.00093   18.8   0.8      0.012   15.3   0.0    2.9  3  PF00168.25 C2 domain
  ------ inclusion threshold ------
      0.073   13.1   5.3        1.6    8.8   0.0    2.7  2  PF11332.3  Protein of unknown function (DUF3134)
       0.14   11.6   0.9        1.7    8.1   0.0    2.5  2  PF02453.12 Reticulon


Domain annotation for each model (and alignments):
>> PF08372.5  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.6    0.0011       3.6      68     134 ..     307     377 ..     301     386 .. 0.60
   2 !   17.2   0.0     7e-07    0.0024      70     153 ..     838     925 ..     831     926 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0011
    PF08372.5  68 agrvqtvvGdvAtqgErlqallswrdpratalflllclvlavvlyvvpf......kvlallaglyllrhprfR 134
                   +r++tvv  + +     + +++wrdp  t ++++l ++++  +y+ +        +++ ++ l +lr   fR
  MMETSP0890-20130614|33378_1 307 INRARTVVRSISAAYAAYEDIMRWRDPVLTLVLFVLYMACC--IYLNAEyagvipMIMLGVLLLLTLRNRLFR 377
                  57888899999888889999*******99876554444444..333322111111222223334555555555 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 7e-07
    PF08372.5  70 rvqtvvGdvAtqgErlqallswrdpratalflllclvlavvlyvvpfkvlallagly..llrhprfRsklP..svplnFfrrLPsktd 153
                   +q v+G v    E ++ +l+w  p++t ++++++l+  +++  +p + l ++agly  ++r   f s  P  +  ln  + LP  +d
  MMETSP0890-20130614|33378_1 838 YAQNVLGLVLDVLESFKNALNWTHPHKTLFIFICTLFGIIIFARIPSRWLFMCAGLYefTIRLLPFGSGSPmtTRCLNLLKSLPNDAD 925
                  5789999999999**************99988888999999999************63367888888866611567899999998777 PP

>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.4e-06     0.012       1      75 [.     110     184 ..     110     191 .. 0.82
   2 ?   -3.8   0.2       3.1   1.1e+04      55      80 ..     494     518 ..     493     518 .. 0.71
   3 ?    0.3   0.0      0.16   5.4e+02      38      56 ..     586     604 ..     562     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.4e-06
                  EEEEEEEESS--S-STSSSS-EEEEEEEECTTE....EEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSS CS
   PF00168.25   1 LkvkvieAknLpnkdkngtsdpyvkvslggaks....kkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrf 75 
                  Lk+k+++++ L +    +  d yv++s+ + k+    k++rT+++ ++ +Pv++ + +++ v+   + + le+ d  r+
  MMETSP0890-20130614|33378_1 110 LKIKLHSCRLLND---EIPGDHYVRISIRPSKKaapsKSRRTHTVYQSASPVFEVSWNLS-VDTFGSMVCLELVDAARD 184
                  7899999999998...7889**********999888777***************999999.665555566766666655 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.1
                  EEESCGGGTEEEEEEEECHSSSCSEE CS
   PF00168.25  55 fevvaeelaeleleVkdedrfgkddf 80 
                  fe ++ + +el l++ +ed+++ ddf
  MMETSP0890-20130614|33378_1 494 FEEDPRSEDELLLDLLHEDDDS-DDF 518
                  5533445555999999999999.776 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.16
                  E--BSS-SSEEEEEEEEEE CS
   PF00168.25  38 TrvikntlnPvWnekftfe 56 
                  T + ++t++P+W+  + ++
  MMETSP0890-20130614|33378_1 586 TGTCRKTNEPRWHGNMGVS 604
                  8899********9766555 PP

>> PF11332.3  Protein of unknown function (DUF3134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.8     0.044   1.5e+02      43      71 ..     495     523 ..     484     525 .. 0.77
   2 ?    8.8   0.0   0.00046       1.6      17      38 ..     664     685 ..     654     698 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.044
    PF11332.3  43 qeesteeeeeiseLigededykdddddde 71 
                  +e++ +e+e + +L+ ed+d++d  ddde
  MMETSP0890-20130614|33378_1 495 EEDPRSEDELLLDLLHEDDDSDDFSDDDE 523
                  4889999999***********99655554 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00046
    PF11332.3  17 plkqessLLdWLeasGRLiare 38 
                  plk+++ LL W ++ GRLi r 
  MMETSP0890-20130614|33378_1 664 PLKNDETLLPWTKSGGRLIFRI 685
                  9******************875 PP

>> PF02453.12  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00049       1.7       2      44 ..     325     367 ..     324     397 .. 0.78
   2 ?    1.2   0.1     0.063   2.2e+02       5     126 ..     857     879 ..     810     899 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00049
   PF02453.12   2 adlllWrdpkksgvvlgsllviwllfsllelsllsvvskllll 44 
                   d+++Wrdp+ + v+++  ++  + + + +  ++ ++    ll
  MMETSP0890-20130614|33378_1 325 EDIMRWRDPVLTLVLFVLYMACCIYLNAEYAGVIPMIMLGVLL 367
                  59***************99996555555555555555444433 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.063
   PF02453.12   5 llWrdpkksgvvlgsllviwllfsllelsllsvvskllllllavtfllelakkllnaskkgpfkepldpevtlseetveeiaeslvelinkalkelrrlllaedlkdslkaavllyllsylg 126
                  l W  p+k+  +++++l+                                                                                                     +++
  MMETSP0890-20130614|33378_1 857 LNWTHPHKTLFIFICTLF---------------------------------------------------------------------------------------------------GIIIF 879
                  456666666666665555...................................................................................................33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.54u 0.40s 00:00:01.94 Elapsed: 00:00:01.05
# Mc/sec: 2528.73
//
Query:       MMETSP0890-20130614|33384_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.72
# Mc/sec: 1015.12
//
Query:       MMETSP0890-20130614|33394_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-33  115.6   0.3    1.2e-33  115.3   0.2    1.1  1  PF02801.17 Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02801.17  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.2   8.7e-38   1.2e-33      16     119 .]       2     105 ..       1     105 [. 0.98

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 8.7e-38
                  -SSS--------HHHHHHHHHH--S-GGGECEEE----------HHHHHHHHHH--...TT..CEEE-GGGT----------HHHHHHHHHHH---B---TT-S CS
   PF02801.17  16 snsltapngeaqarairkalaeagldpedvdyveahGtGtplgDpiEaealkavfgekarkqplavgSvKsniGHleaAaGvaelikvvlalrhgvipptlnle 119
                  +++ ++p g+++a +++ al+ a+l+p+dv yv+ahGt+tp +D+ E+ alk+vf+e+a++++l ++S+K  +GH+++AaG +e++++vla  +g++ppt+nle
  MMETSP0890-20130614|33394_1   2 HITTPEPTGRGLATCLELALESAQLEPTDVAYVNAHGTSTPYNDKFETLALKKVFKEHATSHQLKISSIKGATGHTLGAAGGLEAVATVLAAYTGTLPPTINLE 105
                  78999*******************************************************99****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.32s 00:00:00.73 Elapsed: 00:00:00.57
# Mc/sec: 648.67
//
Query:       MMETSP0890-20130614|33402_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 273.87
//
Query:       MMETSP0890-20130614|33403_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 936.76
//
Query:       MMETSP0890-20130614|33410_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       332  (0.0242832); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 267.83
//
Query:       MMETSP0890-20130614|33431_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00053   19.4   0.0    0.00085   18.7   0.0    1.3  1  PF07366.7 SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> PF07366.7  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.2e-08   0.00085      12      69 ..      88     145 ..      74     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.2e-08
    PF07366.7  12 nsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaeg.d 69 
                  +++ +da+++++  d++ ++   +++rG e+ +a+v +l++af++l+++++d+++ g d
  MMETSP0890-20130614|33431_1  88 ERQVVDAIERYYFVDFESRSG-GTVTRGMEARKAQVLALRRAFSNLQIRIDDVFCFGnD 145
                  677889999999999999944.4******************************997733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:01.07
# Mc/sec: 723.39
//
Query:       MMETSP0890-20130614|33439_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:01.00
# Mc/sec: 455.31
//
Query:       MMETSP0890-20130614|33447_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.6   0.1       0.11   12.4   0.0    1.2  1  PF06064.6 Host-nuclease inhibitor protein Gam


Domain annotation for each model (and alignments):
>> PF06064.6  Host-nuclease inhibitor protein Gam
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.3e-06      0.11      10      51 ..       5      47 ..       2      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.3e-06
                 HHHHHHHHHHHHHHHH.HHHHHHHHHHH----CHHHHHHHHHH CS
    PF06064.6 10 leaqdwarhyqqlare.ekeaeladdlekglslhlleslcide 51
                 +ea dw +  +++  e e ea l  ++   l +h+ es+ ++e
  MMETSP0890-20130614|33447_1  5 IEASDWLKIPERIDTEeEEEALLISQVSIALKQHVNESIPLEE 47
                 89**********987615678899**************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.31s 00:00:00.64 Elapsed: 00:00:00.59
# Mc/sec: 357.42
//
Query:       MMETSP0890-20130614|33441_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-37  124.3  11.0    1.7e-08   33.9   0.1    6.7  6  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.13   10.2   0.1        8.9    4.2   0.0    2.2  2  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   2.4e-12   1.7e-08       2      39 .]     226     264 ..     225     264 .. 0.97
   2 !   24.3   0.0   2.5e-09   1.7e-05       5      39 .]     273     307 ..     270     307 .. 0.96
   3 !   16.0   0.0   1.1e-06    0.0076       1      39 []     311     350 ..     311     350 .. 0.97
   4 !   17.7   0.0   3.2e-07    0.0022       4      39 .]     369     404 ..     366     404 .. 0.91
   5 !   16.5   0.0   7.4e-07    0.0051      15      39 .]     470     494 ..     456     494 .. 0.92
   6 !   16.9   0.8   5.4e-07    0.0037      12      38 ..     510     537 ..     500     538 .] 0.88

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 2.4e-12
                  EEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  + ++t++gH+++V  ++  p  g+ll+s+S Dgt+++Wd
  MMETSP0890-20130614|33441_1 226 KKLHTFTGHKKGVQTIRLFPKtGHLLLSASLDGTCKIWD 264
                  789***********************************9 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 2.5e-09
                  EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +t+ gH+ + ++v f+++g+ + s++ D+ ir+Wd
  MMETSP0890-20130614|33441_1 273 RTYIGHSEAARDVNFNHNGTKFGSSGFDRFIRIWD 307
                  7999******************************9 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.1e-06
                  TEEEEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   1 geckatlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  g c++tl+   + ++c+ f p   ++l+ g +D++i+ Wd
  MMETSP0890-20130614|33441_1 311 GSCLHTLTPNRKMCYCLVFYPRdDNILLAGASDNKIYQWD 350
                  68*************************************9 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 3.2e-07
                  EEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++++  H +pV++v + +d  +++s ++D+++ +W+
  MMETSP0890-20130614|33441_1 369 IQEYNYHLKPVNSVTYIDDDARFVSTGDDKKVFVWE 404
                  56777899***************************6 PP

  == domain 5    score: 16.5 bits;  conditional E-value: 7.4e-07
                  EEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  15 tcvafspdgpllasgSrDgtirlWd 39 
                  + + fsp+g++lasg + g + +Wd
  MMETSP0890-20130614|33441_1 470 CGLTFSPNGRYLASGDAEGRLFIWD 494
                  5789********************9 PP

  == domain 6    score: 16.9 bits;  conditional E-value: 5.4e-07
                  SSEEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27  12 spVtcvafspd.gpllasgSrDgtirlW 38 
                  +p+ + a++p  +++++++++D+ i+lW
  MMETSP0890-20130614|33441_1 510 GPCIATAWHPIePSWIFTAGWDNLIKLW 537
                  7888899********************* PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0018        13     233     256 ..     250     274 ..     239     289 .. 0.80
   2 ?    4.2   0.0    0.0013       8.9     240     258 ..     300     318 ..     299     367 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0018
    PF11715.3 233 fvftlsrDgkLRvWnletgqc.lrt 256
                  ++++ s+Dg+ ++W++  + + +rt
  MMETSP0890-20130614|33441_1 250 LLLSASLDGTCKIWDVYQNRIaMRT 274
                  5789************888874555 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0013
    PF11715.3 240 DgkLRvWnletgqclrttd 258
                  D+++R+W++e g+cl t +
  MMETSP0890-20130614|33441_1 300 DRFIRIWDTESGSCLHTLT 318
                  99************88875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.17s 00:00:01.02 Elapsed: 00:00:01.04
# Mc/sec: 1239.65
//
Query:       MMETSP0890-20130614|33448_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-39  135.3   0.9    2.5e-39  135.0   0.6    1.1  1  PF00590.15 Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> PF00590.15  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.6   1.8e-43   2.5e-39       2     209 ..      26     234 ..      25     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 1.8e-43
   PF00590.15   2 lylVGvGpGdpellTlralralkeadvvlgedr.aleilldliaq...vapmgkekeplekayeeiaelleaaealragkdVvvlvsGDPlvygtgsylvealraeeagieveviPGissvqaaaarlgiplteggevslvl......lpglekeeralleallaaadtvvlltdpeklaelaeaLlea..lgdddtpvavvenlgtederiyrgtleel 209
                  + lVG+GpGdpellT+ alr +++ d+++ +dr +++ +ldl+a     a++++    +e+a+++i +++  ae + ++++Vv+l++GDP+v+g+g++++ ++r+   gie  v+PGiss +aa+ ++g+p t++g +++v+      + g+e   +al     a+ +t vll++  +la+l + L++   ++    p++++e+++++++r++ +  +++
  MMETSP0890-20130614|33448_1  26 IALVGAGPGDPELLTVSALRHIADPDALVIADRlVSKEILDLVAGelrIAKKRP--GCAEEAQQQIYDWV--AEGVGNNRSVVRLKIGDPFVFGRGAEEILEFRET-MGIEPVVVPGISSSLAAPLAAGVPVTHRGAAHQVIlttgygRNGTE---PALPPW--APHQTYVLLMAVGRLAQLTQSLIQTkeFPH-SCPALIAERATCPNQRVLLADMATI 234
                  89**************************777766*******9988754333333..477788********..****************************999995.7**********************************97765333322...222222..235*******************99997776.56***************98877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.72
# Mc/sec: 1124.96
//
Query:       MMETSP0890-20130614|33456_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0059   15.6   0.2      0.015   14.3   0.2    1.7  1  PF13248.1  zinc-ribbon domain
  ------ inclusion threshold ------
      0.011   15.3   0.2      0.025   14.2   0.1    1.5  1  PF06221.8  Putative zinc finger motif, C2HC5-type
      0.034   13.5   1.0        5.4    6.5   0.1    2.6  2  PF13240.1  zinc-ribbon domain
      0.045   13.4   0.5       0.19   11.4   0.3    1.8  1  PF12773.2  Double zinc ribbon
       0.14   11.8   2.1        2.3    7.8   0.1    2.5  2  PF02150.11 RNA polymerases M/15 Kd subunit


Domain annotation for each model (and alignments):
>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   5.6e-06     0.015       4      24 ..     189     213 ..     187     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.6e-06
    PF13248.1   4 tCPnCGavlevd.....akFCpnCGa 24 
                  +C +CG+v  +d       FC++C +
  MMETSP0890-20130614|33456_1 189 FCLHCGRV-QADdispkILFCSHCNS 213
                  9******6.55559999*******65 PP

>> PF06221.8  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   9.2e-06     0.025      17      48 ..     186     218 ..     175     225 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.2e-06
    PF06221.8  17 aapnClnCGkiiCekegl.lgpClfCgspllss 48 
                  +++ Cl+CG++      +    C++C+s+l ss
  MMETSP0890-20130614|33456_1 186 ILSFCLHCGRVQADDISPkILFCSHCNSSLSSS 218
                  4789********9999988889******99886 PP

>> PF13240.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.002       5.4      14      21 ..     188     195 ..     187     197 .. 0.86
   2 ?    4.9   0.0    0.0062        17       1       9 [.     207     215 ..     205     219 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.002
    PF13240.1  14 kFCpyCGt 21 
                  +FC +CG+
  MMETSP0890-20130614|33456_1 188 SFCLHCGR 195
                  59****96 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0062
    PF13240.1   1 kCPkCGael 9  
                  +C +C  +l
  MMETSP0890-20130614|33456_1 207 FCSHCNSSL 215
                  677776665 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   6.9e-05      0.19       1      23 [.     190     216 ..     180     225 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.9e-05
    PF12773.2   1 CpqCgae....npsgarfCpqCgaklk 23 
                  C +Cg+     ++++  fC++C+++l+
  MMETSP0890-20130614|33456_1 190 CLHCGRVqaddISPKILFCSHCNSSLS 216
                  566666655555555666666666665 PP

>> PF02150.11  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.025        69       1       8 [.     187     194 ..     187     195 .. 0.91
   2 ?    7.8   0.1   0.00083       2.3       3      20 ..     207     224 ..     205     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.025
                  --B-TTTS CS
   PF02150.11   1 lrFCpkCn 8  
                  l+FC  C+
  MMETSP0890-20130614|33456_1 187 LSFCLHCG 194
                  79*****8 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00083
                  B-TTTSSBEEEEEETTTT CS
   PF02150.11   3 FCpkCnNlLlpkedkegr 20 
                  FC+ Cn+ L +  d++ +
  MMETSP0890-20130614|33456_1 207 FCSHCNSSLSSSGDDLLN 224
                  *******99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.34s 00:00:00.89 Elapsed: 00:00:00.61
# Mc/sec: 1060.68
//
Query:       MMETSP0890-20130614|33460_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.80
# Mc/sec: 626.05
//
Query:       MMETSP0890-20130614|33461_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-28   97.8   0.0    5.6e-28   97.6   0.0    1.1  1  PF00535.21 Glycosyl transferase family 2
    6.8e-11   42.3   0.0    9.2e-11   41.8   0.0    1.1  1  PF13641.1  Glycosyltransferase like family 2
    5.2e-05   22.3   0.0    6.4e-05   22.0   0.0    1.1  1  PF10111.4  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.062   12.2   0.0    1.5  2  PF07279.6  Protein of unknown function (DUF1442)
      0.054   12.9   0.1      0.091   12.2   0.1    1.3  1  PF02604.14 Antitoxin Phd_YefM, type II toxin-antitoxin system


Domain annotation for each model (and alignments):
>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0     2e-31   5.6e-28       1     121 [.      37     163 ..      37     168 .] 0.96

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 2e-31
                  EEEEEESS-TTTHHHHHHHHHT-...S---EEEEEEE-S-..-HHHHHHHGGGGG.E------HHHHHS-HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHHHHHHHH.-T..T--EEEEEEEE CS
   PF00535.21   1 sviiptyNeekylletlesllnq...typnfeiivvDDgS..tDetveileeyak.sdprvrvirleknvGkagarnaglkkatgdyilflDaDdepdpdwleklveklekdgadvvigsrvrifge 121
                  +v++ptyNe+++l+e+ ++l       + ++e+iv DD S  t +++ei+ e+ak ++ r++v r+++++G+++a+  g+ +a++d+++++DaD++++p++++ +v+++  ++ad++igsr   +g+
  MMETSP0890-20130614|33461_1  37 TVVVPTYNEAENLEELTRRLFTAtrdAGLEVELIVADDESigTKKSEEIVAELAKgYNIRIHVRRSSEGRGLSSAVLLGFGLASHDILVCMDADLQHEPEAVPAMVQPILTGRADFAIGSRHIDQGG 163
                  69*********************9*9**********************************************************************************************9877665 PP

>> PF13641.1  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.4e-14   9.2e-11       2     125 ..      35     158 ..      34     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 3.4e-14
    PF13641.1   2 rvavvvptlneddvlarvlesilaldyapr..levivvvdg..sdaetldvaeelaaaypdvrvrvvvrprnpgptgkaralnealqaiksdlvlllDaDsvvdpdtlrrllpfflskgvglvqgpvl 125
                  +++vvvpt+ne++ l+++ + +   ++++   +e+iv +d+  ++++  ++++ela+ y ++r++v + ++  g +g + a+  ++  +++d+++ +DaD   +p+++ ++++ +l+ +++++ g ++
  MMETSP0890-20130614|33461_1  35 KITVVVPTYNEAENLEELTRRLFTATRDAGleVELIVADDEsiGTKKSEEIVAELAKGY-NIRIHVRRSSE--G-RGLSSAVLLGFGLASHDILVCMDADLQHEPEAVPAMVQPILTGRADFAIGSRH 158
                  589********************88883335899999999988899999**********.6799*866655..6.47788899*******************************99988888877665 PP

>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.3e-08   6.4e-05       1     111 [.      37     143 ..      37     153 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.3e-08
    PF10111.4   1 svIiPvrlseekrdilerlqsilarlkefrsdeeveilvvdndssesf.akelkkiiakngaikyishktekdlfspakaRNrgaeksesdvilflDvDllisedllekiik 111
                  +v++P ++++e+   le+l  +l+ + +     eve++v+d++s + +  +e+ + +ak ++i  i      +  + + a  +g+ +++ d+++ +D+Dl  +++ + ++++
  MMETSP0890-20130614|33461_1  37 TVVVPTYNEAEN---LEELTRRLFTATR-DAGLEVELIVADDESIGTKkSEEIVAELAKGYNI-RIHVRRSSEGRGLSSAVLLGFGLASHDILVCMDADLQHEPEAVPAMVQ 143
                  79********99...8999999999999.68889*******9997654156788888888887.555555556677777777********************9999988887 PP

>> PF07279.6  Protein of unknown function (DUF1442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.26   7.2e+02      17      46 ..      42      71 ..      25      82 .. 0.73
   2 ?   12.2   0.0   2.3e-05     0.062      22      89 ..      75     141 ..      70     157 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.26
    PF07279.6 17 tvksckslkesgvaellaataaGwnarliv 46
                 t +  ++l+e     + a+  aG +++liv
  MMETSP0890-20130614|33461_1 42 TYNEAENLEELTRRLFTATRDAGLEVELIV 71
                 455566777776667777778888888888 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.3e-05
    PF07279.6  22 kslkesgvaellaataaGwnarlivetwseGdaiatsv..Glavaakhtngrhvcivpderskseylqal 89 
                  +s  + +  e++a +a G+n+r+ v   seG  ++++v  G+ +a++      vc+  d + + e + a+
  MMETSP0890-20130614|33461_1  75 ESIGTKKSEEIVAELAKGYNIRIHVRRSSEGRGLSSAVllGFGLASHD---ILVCMDADLQHEPEAVPAM 141
                  677888999***********************9999882244555543...3466666666666655555 PP

>> PF02604.14  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.3e-05     0.091      26      58 ..      26      59 ..      19      75 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
   PF02604.14 26 pivItrnGkpvaVlvsl.edyerlqeatlyllsl 58
                  +v tr +k+  V+v+   + e+l+e+t +l  +
  MMETSP0890-20130614|33461_1 26 KMVLTRSNKKITVVVPTyNEAENLEELTRRLFTA 59
                 39********77777766********99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 583.46
//
Query:       MMETSP0890-20130614|33462_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-33  115.3   0.0    2.6e-33  115.0   0.0    1.1  1  PF13883.1  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
       0.05   13.4   0.0       0.09   12.6   0.0    1.6  1  PF01243.15 Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> PF13883.1  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   3.8e-37   2.6e-33      15     170 .]       2     158 ..       1     158 [. 0.95

  Alignments for each domain:
  == domain 1    score: 115.0 bits;  conditional E-value: 3.8e-37
    PF13883.1  15 hreslgtlstisttkdiegapfanvvsisdgaaddstGnpylllvdisstvqniqanskasltiseaqkpeckkk...kvdpesptcaRvsltGklekve.sdekklaekcflsrHpdakkWlpgn..sihkshfvkLeveeiylvggFGgaayidaeeYls 170
                  ++ ++gtlst+st++++ g pf+n vs++     +++G py+ +++++ + q++ a++++sl++seaq ++++++   + dpe+p caR+s++G  e+v+ ++e++ a++ ++++Hp  +++  ++  s+h+++++k+++ +++l++++Gga+ i++++Y++
  MMETSP0890-20130614|33462_1   2 ESLDWGTLSTLSTMNHVSGSPFGNPVSFA-----SNHGVPYMCVSPLDQSIQDLFADARVSLSMSEAQFGNYSSClipSGDPENPPCARLSISGVFENVTdPNEWQIAKQVLTAKHPSFENFCFSSddSFHHFFLAKINIYQVWLINMYGGASFITPSQYYN 158
                  5679************************8.....9*********************************888777666699*******************989********************988889********************************96 PP

>> PF01243.15  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.09      15      70 ..      10      64 ..       1      99 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
                 EEEEEE-.---.EEEEEEECEEETTCTEEEEEEETTSHHHHHHHH--EEEEEEEETT CS
   PF01243.15 15 gtLATvd.kdGrPsaspvllkygdgrdgiyfatnkdsrkvrnleenpkvsllfvdde 70
                  tL+T +   G P   pv+++   g   +y+ ++   +  ++l ++ +vsl   +  
  MMETSP0890-20130614|33462_1 10 STLSTMNhVSGSPFGNPVSFASNHGV--PYMCVSPLDQSIQDLFADARVSLSMSEAQ 64
                 34455443567777777777766666..***********************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.37s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 579.66
//
Query:       MMETSP0890-20130614|33474_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-23   81.3   0.0    6.1e-23   81.2   0.0    1.0  1  PF00180.15 Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> PF00180.15  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   4.4e-27   6.1e-23      19     103 ..       2      90 ..       1      91 [] 0.97

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 4.4e-27
                  HHHHHHHHTT---EEEEEE------HHHH----S-HHHHHHHHTSSEEE-------T....-GGGSTT------TTT----EEEEEEE- CS
   PF00180.15  19 lkvlkavkekaglelefeevdvGgaaidetgeplpeetleaikeadavllgavgtpk....gkevrpeegLlalrkeldlfanlrpvkv 103
                  +k ++av ++ g e+ + e ++Gg aide+++p p+etle++++ad +ll+a+g+pk    ++e+rpe+gLl++rk+l+lfanlrp+k 
  MMETSP0890-20130614|33474_1   2 VKAVEAVGSNCGFEVRWDEQLIGGVAIDEKKTPWPKETLESCRKADSILLAAIGGPKwdgnPRELRPETGLLQMRKDLGLFANLRPAKA 90 
                  688999*******************************************************9************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       126  (0.00921592); expected 273.4 (0.02)
Passed bias filter:                      126  (0.00921592); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 325.48
//
Query:       MMETSP0890-20130614|33477_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.82
# Mc/sec: 1414.44
//
Query:       MMETSP0890-20130614|33489_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.60
# Mc/sec: 862.69
//
Query:       MMETSP0890-20130614|33495_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.55
# Mc/sec: 819.12
//
Query:       MMETSP0890-20130614|33492_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-09   36.3   1.8    1.2e-08   34.7   0.0    2.3  2  PF00575.18 S1 RNA binding domain
  ------ inclusion threshold ------
       0.01   14.4   2.8       0.02   13.5   1.9    1.4  1  PF00562.23 RNA polymerase Rpb2, domain 6
       0.15   12.0   9.7      0.062   13.2   0.8    2.4  2  PF11068.3  Protein of unknown function (DUF2869)
       0.18   11.2   5.8      0.083   12.3   1.1    2.1  2  PF14381.1  Ethylene-responsive protein kinase Le-CTR1
       0.39   10.4   5.3       0.19   11.4   0.4    2.5  3  PF12614.3  Ribosome recycling factor
       0.79    9.3   5.8       0.48   10.0   0.4    3.0  3  PF02599.11 Global regulator protein family


Domain annotation for each model (and alignments):
>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   5.4e-12   1.2e-08       4      74 .]     110     180 ..     107     180 .. 0.94
   2 ?    0.2   0.2      0.32   7.3e+02      40      65 ..     244     271 ..     230     276 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 5.4e-12
                  TT-EEE--EEEEETTEEEEE--..--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
   PF00575.18   4 kGevvkGtVtsvtkgGafVdlg.ngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74 
                   G+vv G+ + + ++Ga +dlg     ++++ seis++ v++++e + ++ ++   ++++d++ + ++Ls+k
  MMETSP0890-20130614|33492_1 110 LGQVVIGRCVELRPFGAMIDLGeGHRPALLHKSEISQRLVRQIDEIIPIDADITCAIVNIDEKGR-VSLSTK 180
                  699*******************77788***********************************977.****97 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.32
                  C..EEEECCCCEETT----EEEEE-EEE CS
   PF00575.18  40 d..rvedpeevlkvgdevevkvlkvdke 65 
                  +  ++++++++ kvgd++    ++ + e
  MMETSP0890-20130614|33492_1 244 RikKKRQIKQKEKVGDKISTATTDDNQE 271
                  1457899999999999998776666655 PP

>> PF00562.23  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.9   8.8e-06      0.02     139     244 ..     162     263 ..     137     267 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.8e-06
                  ----CCCS-------SS---...----EEE---.B-----.----------..-B---EE--------EEEEEE.......EE-----EEEEEEE-----------EE- CS
   PF00562.23 139 seealkkldedGiikvgaev...kegdilvgkitgetelspllraifgekakevkdtslrvksgeegvVdkvkifsrkkgdelkegvnklvkvylaskrkiqvGDKfag 244
                   + a  ++de+G +++ ++v   k+gd+l+      +  ++  ++i+ +ka++ k + l  ++  ++vVd        ++ ++ +++++ +k + ++k+k +vGDK++ 
  MMETSP0890-20130614|33492_1 162 ITCAIVNIDEKGRVSLSTKVletKPGDMLIDSA---SVYANAPKQIKVQKATSLKARRLSANKVADAVVDLATD----SSLDDLDNQIQRIKKKRQIKQKEKVGDKIST 263
                  5667889*********99975557899999995...34445889999999999999999988887777777766....666677788999*****************97 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   2.7e-05     0.062      17     110 ..      37     134 ..      28     151 .. 0.86
   2 ?    3.1   1.3     0.036        83      32      79 ..     231     275 ..     202     284 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.7e-05
    PF11068.3  17 sKeelqeelqeqleqleqelqqLefqkkkalkeikkqsa....qqieeiqqqvekekakreeqkkqllqqleqvqeLelgsevkqgeveslvevkvGD 110
                  s +el+   +++l +l++  q Le   + a + ++  s     q+ ee+ q  +++++k+ e+   +++q  ++ ++ +g  v+ +   +++++ +G 
  MMETSP0890-20130614|33492_1  37 SENELKDVRRSRLYRLDEATQSLETSPRNASRAAELGSKlqalQEKEELGQMAKEKISKMSERVSAVQKQKIRLGQVVIGRCVELRPFGAMIDLGEGH 134
                  5566666667888999999999999999888887766666778*****************************************99999999998886 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.036
    PF11068.3  32 leqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkql 79 
                  +++ l++L+ q +++ k+ +   ++q e++ +++   +++ +++  ql
  MMETSP0890-20130614|33492_1 231 TDSSLDDLDNQIQRIKKKRQ---IKQKEKVGDKISTATTDDNQETMQL 275
                  68888899999999888754...4666777666666655555554444 PP

>> PF14381.1  Ethylene-responsive protein kinase Le-CTR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.17   3.8e+02     108     146 ..      85     118 ..      33     121 .. 0.51
   2 ?   12.3   1.1   3.6e-05     0.083      42      97 ..     202     257 ..     190     276 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.17
    PF14381.1 108 mGgpvkdeeselarwkelseelke.nsgvvvlGslkiGlc 146
                  +G+ +k+      + +++se++ + +++ + lG++ iG c
  MMETSP0890-20130614|33492_1  85 LGQMAKE------KISKMSERVSAvQKQKIRLGQVVIGRC 118
                  2222222......122222222222333444777777766 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.6e-05
    PF14381.1  42 eqgklpsledLkavesedvklevvlVdrrkDkkLkeLeqlarelvksletntkelv 97 
                  +q k+ + ++Lka + +  k+   +Vd ++D++L +L+++++ + k+ ++++ke v
  MMETSP0890-20130614|33492_1 202 KQIKVQKATSLKARRLSANKVADAVVDLATDSSLDDLDNQIQRIKKKRQIKQKEKV 257
                  677899999*****98888888899*******************988877665544 PP

>> PF12614.3  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   8.3e-05      0.19      24      61 ..      30      67 ..      17     115 .. 0.64
   2 ?   -3.5   0.0       3.2   7.3e+03      80     104 ..     139     163 ..     136     167 .. 0.55
   3 ?    0.5   0.1      0.19   4.4e+02      28      44 ..     235     251 ..     198     275 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.3e-05
    PF12614.3 24 akalaaqvecelkRvrrsRnwqltgeasklqsfleelk 61
                 +k  a+  e+elk vrrsR ++l +++++l+   ++  
  MMETSP0890-20130614|33492_1 30 LKRSAESSENELKDVRRSRLYRLDEATQSLETSPRNAS 67
                 678999*******************9999986654443 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.2
    PF12614.3  80 lkhsdklepledklarLieenpnit 104
                  l++s+  ++l  ++ ++i  + +it
  MMETSP0890-20130614|33492_1 139 LHKSEISQRLVRQIDEIIPIDADIT 163
                  4555555555556666665555555 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.19
    PF12614.3  28 aaqvecelkRvrrsRnw 44 
                    +++++++R+++ R+ 
  MMETSP0890-20130614|33492_1 235 LDDLDNQIQRIKKKRQI 251
                  45567777777777754 PP

>> PF02599.11  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.89     2e+03      22      33 ..     100     111 ..      99     113 .. 0.87
   2 ?   10.0   0.4   0.00021      0.48       4      32 ..     148     177 ..     147     197 .. 0.89
   3 ?    0.3   0.0      0.23   5.2e+02      35      44 ..     199     208 ..     180     215 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.89
   PF02599.11  22 vlevkggqVrlG 33 
                  v +v+++++rlG
  MMETSP0890-20130614|33492_1 100 VSAVQKQKIRLG 111
                  778999****99 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00021
   PF02599.11   4 LtRkvgEsIvIgddIeitvlevk.ggqVrl 32 
                  L R+++E I I+ dI++ +++++ +g+V l
  MMETSP0890-20130614|33492_1 148 LVRQIDEIIPIDADITCAIVNIDeKGRVSL 177
                  78********************95555655 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.23
   PF02599.11  35 eAPkevsihR 44 
                  +APk+++++ 
  MMETSP0890-20130614|33492_1 199 NAPKQIKVQK 208
                  79*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1105  (0.0808221); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.62
# Mc/sec: 1441.68
//
Query:       MMETSP0890-20130614|33500_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-30  103.5   0.0    7.3e-30  103.0   0.0    1.2  1  PF03476.11 MOSC N-terminal beta barrel domain
    1.2e-22   79.6   0.0    3.6e-22   78.1   0.0    1.8  1  PF03473.12 MOSC domain


Domain annotation for each model (and alignments):
>> PF03476.11  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   1.1e-33   7.3e-30       3     118 ..      20     135 ..      18     137 .. 0.90

  Alignments for each domain:
  == domain 1    score: 103.0 bits;  conditional E-value: 1.1e-33
   PF03476.11   3 rvssLfvyPiKsckgvslsraevtaa.GllaeDReflvvdedGkfltarrePrlalirttld.eedglltltapgmkdlevslaaakasleevsvwelsasaldegdaaakwlsdfLg 118
                  +vs+++vyPiKsc+g+s++ ae++ + Gl a DR +++vd+  +f+++rr P++ali+++l+ ++++ + l+ap+m dlev++   + ++  v++we++++a+d+gd+aa+wlsdfL 
  MMETSP0890-20130614|33500_1  20 KVSQVIVYPIKSCAGISVPAAEIDSQsGL-ALDRVWMIVDSRNSFMSQRRSPKMALITPNLPqNKKKPIILKAPDMTDLEVPVI-IRGKKIIVRCWEDQIEAYDQGDEAAQWLSDFLT 135
                  79********************9865265.7*********999*****************9835677899************97.45556789***********************97 PP

>> PF03473.12  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   5.3e-26   3.6e-22      10     110 ..     160     299 ..     152     327 .. 0.80

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 5.3e-26
                  --------TTSEEEEECHHHHHHHHHSG.GGGSCCG----EEEE--T...TCCGB-EEEE----EEEEEE-----THHHHHHCHCCH................................................HHHHHH- CS
   PF03473.12  10 pskvhggderqvllisresladlnerlgerslkperFraNlvvsgveafaedtwlirririGgvelevsgpcerCvvttvdqetgardpe.........................................gkvlfgrklsa 110
                  +++ +++d  ++ll+s +sl+dln++++++ ++++rFr+N+vv+g +a+aedtw  + i i + +  v++pc+rC ++t+dq tg+  ++                                         ++v fg++l++
  MMETSP0890-20130614|33500_1 160 GTRTGFSDGFPILLASNASLEDLNAKIKTSNVPMDRFRPNIVVKGAQAWAEDTW--KHIIIHSETYLVAKPCSRCKIPTIDQTTGKPAGTntksktdddlgggpapgaepiatlqkfrtgkhlnfdkaewkDEVFFGQNLAH 299
                  5678899***********************************************..**************************888876667777778888888888888888888888888888888888777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.78
# Mc/sec: 1029.20
//
Query:       MMETSP0890-20130614|33505_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.5   0.0        3.9    7.2   0.0    3.1  3  PF00482.18 Type II secretion system (T2SS), protein F
       0.15   11.3   4.6      0.038   13.3   0.9    1.6  2  PF07698.6  7TM receptor with intracellular HD hydrolase


Domain annotation for each model (and alignments):
>> PF00482.18  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00057       3.9      70     123 ..      51     104 ..      33     105 .. 0.88
   2 ?    1.7   0.1      0.03   2.1e+02       4      48 ..     146     192 ..     143     221 .. 0.72
   3 ?   -0.1   0.0      0.11   7.3e+02      37      80 ..     307     371 ..     305     391 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00057
                  ------HHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
   PF00482.18  70 gesgGnlaevLerladyleerrelrkkllaalleplllvivallillillavvl 123
                   e g++  ++L  ++d + ++++++ k++ ++   l+    + ++ +++l+ + 
  MMETSP0890-20130614|33505_1  51 VEMGERGRDMLASYSDRWTQELKNESKVRVGICAALGGGACGSAVAWLVLSSLA 104
                  566677789***************************999999999999998765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.03
                  HHHHHHH----HHHHHHHHHHT-S..-HHHHHHHHHHHHHHH----H CS
   PF00482.18   4 qlasllsaGlplleaLellareke..ngplaeelkrilerlrnGgsl 48 
                   la+ ++a l+  +aL  + ++ +     ++e+ ++i++ ++ G++ 
  MMETSP0890-20130614|33505_1 146 VLALAVRANLTARSALNDVNKKYGtvFASARERTEEIIDSAAIGQQT 192
                  68999999999999999999998777777777777777777776633 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.11
                  HHHHHHH----HHHH--....................--TT.TS.-HHHHHHHH-------HHHHH CS
   PF00482.18  37 rilerlrnGgslsaala....................rtps.ef.pdlvaaliaagesgGnlaevL 80 
                  +i+ +++ G+++ + l+                    ++ +  f  ++ a +i a + + ++a + 
  MMETSP0890-20130614|33505_1 307 SIHTQINLGRRIRQTLSslnplrlreptiyyltppaqQY-NpIFvAAIPALMIIAYDHSDDIARIG 371
                  577888888888888887778878788888877777444.44777888888888888888887665 PP

>> PF07698.6  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   5.6e-06     0.038      93     171 ..      94     174 ..      84     176 .. 0.82
   2 ?   -2.5   0.1      0.37   2.6e+03      63      76 ..     345     358 ..     333     390 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.6e-06
    PF07698.6  93 sllisllfgnnleflllalvsglvgalslrrlrsRsqllragllvalvnllvilalgl...isssnlswleillslvlafis 171
                  ++ +++l+++ +  ++ +++ g+v al+  r+r+Rs + ++ +  + v ++ +lal +   ++ ++    +++++++ +f+s
  MMETSP0890-20130614|33505_1  94 AVAWLVLSSLAPVGAITGAITGAVFALTSDRVRRRSRITKLLCTWSRVCAAAVLALAVranLTARS-ALNDVNKKYGTVFAS 174
                  56677779999999***************************9999999998888887755644444.335888888888877 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.37
    PF07698.6  63 isylvplaaaalLl 76 
                  + +++++a++al++
  MMETSP0890-20130614|33505_1 345 YNPIFVAAIPALMI 358
                  44444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       811  (0.0593183); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.49s 00:00:01.17 Elapsed: 00:00:00.74
# Mc/sec: 1285.61
//
Query:       MMETSP0890-20130614|33530_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    8.0 147.6    4.8e+03   -3.2  22.8    9.3  5  PF04886.7 PT repeat


Domain annotation for each model (and alignments):
>> PF04886.7  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7  27.0         1   1.4e+04       5      35 ..      28      58 ..      13      79 .. 0.66
   2 ?   -3.2  22.8      0.35   4.8e+03       2      32 ..      70     100 ..      69     117 .. 0.67
   3 ?  -11.0  21.5         1   1.4e+04       2      35 ..     118     149 ..      99     150 .. 0.59
   4 ?   -7.9  25.5         1   1.4e+04       2      34 ..     152     184 ..     133     204 .. 0.75
   5 ?  -12.6  21.7         1   1.4e+04       2      35 ..     185     221 ..     184     257 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 1
    PF04886.7  5 qPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                  Pt+ PT+ PT +Pt qP++ Pt  Pt+ P+
  MMETSP0890-20130614|33530_1 28 TPTSVPTEIPTLPPTIQPSSMPTTYPTSDPS 58
                 5555555555555555555554444444443 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.35
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtd 32 
                  +T +P+++PTv P+  Pta PT  Pt+qPt+
  MMETSP0890-20130614|33530_1  70 TTPYPSSHPTVVPSSIPTACPTVTPTSQPTT 100
                  6666777777776666666666666666664 PP

  == domain 3    score: -11.0 bits;  conditional E-value: 1
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                  p+  P++ PT+ PT  +t+qPT+ P++ +t  Pt
  MMETSP0890-20130614|33530_1 118 PSLTPSASPTNLPT--LTSQPTSLPSSVSTLVPT 149
                  33334444444444..357777777777776665 PP

  == domain 4    score: -7.9 bits;  conditional E-value: 1
    PF04886.7   2 pTaqPteqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                  p+++Pt+ P+  PT  P+aqPT  P+  P++ P
  MMETSP0890-20130614|33530_1 152 PSSNPTSAPSSSPTFLPSAQPTHFPSLPPSALP 184
                  566666666666666666666666666666666 PP

  == domain 5    score: -12.6 bits;  conditional E-value: 1
    PF04886.7   2 pTaqPteqPTvqPTgqPtaq..PTdqPt.aqPtdaPt 35 
                  ++++P+ +PT  PT  P+    PT+ Pt a P+++P+
  MMETSP0890-20130614|33530_1 185 SSDEPSIGPTSSPTTSPSKSifPTSGPTkAIPSQQPS 221
                  6677777777777777766444666666334666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       767  (0.0561001); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.24u 0.39s 00:00:01.63 Elapsed: 00:00:01.05
# Mc/sec: 1513.13
//
Query:       MMETSP0890-20130614|33536_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   10.9   0.2       0.41    9.8   0.0    1.6  2  PF13869.1 Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> PF13869.1  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.13   1.7e+03     123     136 ..      18      31 ..      13      34 .. 0.86
   2 ?    9.8   0.0     3e-05      0.41     106     122 ..      89     105 ..      67     110 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.13
    PF13869.1 123 lypYlPahitkpkE 136
                   y +lP   ++p+E
  MMETSP0890-20130614|33536_1  18 KYGFLPIPASRPQE 31 
                  6999*******999 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 3e-05
    PF13869.1 106 evgellgewwrpnfess 122
                     + l+ewwrp f+++
  MMETSP0890-20130614|33536_1  89 LLRDSLAEWWRPRFNKE 105
                  46899*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 541.11
//
Query:       MMETSP0890-20130614|33537_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 704.53
//
Query:       MMETSP0890-20130614|33528_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-58  197.7   0.8    2.9e-58  197.2   0.5    1.2  1  PF00112.18 Papain family cysteine protease
    1.2e-10   41.4   1.9    1.9e-10   40.7   1.3    1.3  1  PF08246.7  Cathepsin propeptide inhibitor domain (I29)
    1.1e-05   24.0   0.6    0.00023   19.7   0.1    2.1  2  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   0.5   6.3e-62   2.9e-58       1     213 [.      88     297 ..      88     303 .. 0.92

  Alignments for each domain:
  == domain 1    score: 197.2 bits;  conditional E-value: 6.3e-62
                  -TSB--CCCTT.GGG---B------HHHHHHHHHHHHHHHHHHS.S---B-HHHHHHH-TTTS-.....TT----HHHHHHHHHHC---BBTTTS---SSC-.S--CCCC--C.CCCECEEEEEESS-HHHHHHHHHH-S-EEEEE--CCHCCTTEEE--BSSTCC-TTG--EEEEE---BSCT..TC-EEEEE-SB-TT------EEEESSSS.SGGGTT CS
   PF00112.18   1 lpesvDwrekkgavtpvkdqgqCGsCWafsavgalegrlaiktkkklvslSeqelvdCskeene.....gCnGGlmenafeyikknggivtekdypYkakeggkCkkkkkkekevakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecsstelnhavlivGygven..gkkyWivkNSWgtdwGekGYiriargkn.necgie 213
                  lp++vDwr+k+  vtpvk+qg+CG+CW+ +a++ +e++lai+t ++l+ lS qe +dC ++ ++     gC+G + e a+  ++k  g   e++ p+++k+ g+C+++ +    va+++g +++++n+ +al++a+a+ gP+++++das +    Y+sGv+  +   +t+++hav++vGyg +n  +  yW+v+NSWgt+wGe+GYir++r+ +   cg +
  MMETSP0890-20130614|33528_1  88 LPSTVDWRTKD-VVTPVKNQGSCGCCWSEAATECIESQLAINT-GSLLILSPQEFIDCAQNPDScggtgGCQGATAEIAYATAIK-YGAFLESEFPFQGKN-GNCTNTPSP---VANVSGWVRLPRNDYDALMQAVATIGPIAISVDASWT---DYESGVFPAS-EGGTDIDHAVQLVGYGYDNtsKLSYWLVRNSWGTSWGEDGYIRLERNASgLPCGTD 297
                  69*******86.9******************************.7**************9555578999***************9.9**************.7***99864...68********************************996...9*******95.5668**************987889**********************9885566655 PP

>> PF08246.7  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   1.3   4.1e-14   1.9e-10       1      57 [.       5      61 ..       5      62 .. 0.97

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 4.1e-14
    PF08246.7  1 FeswmdaygkkYrhsseinerfenFkeNlrqiqehNanknvtftlglNkfsDlsheE 57
                 F+++ +++gk Y++s+e+++r+  F ++l++i  hN++k ++ + glN++ D+s+ E
  MMETSP0890-20130614|33528_1  5 FDEYLQHFGKFYTSSEEYERRKRLFLNKLKEILAHNKDKTKSWKKGLNELTDMSDAE 61
                 99*****************************************************99 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0     0.007        32      56      80 ..     101     125 ..      42     131 .. 0.87
   2 !   19.7   0.1     5e-08   0.00023     357     396 ..     245     284 ..     240     288 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.007
   PF03051.10  56 devtnqkqsGRCWlFaalnvlRlkl 80 
                   +v nq + G CW  aa+ ++  +l
  MMETSP0890-20130614|33528_1 101 TPVKNQGSCGCCWSEAATECIESQL 125
                  3899**********99999887665 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 5e-08
   PF03051.10 357 slmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                  + ++Ha+ l+g   d++ k + w v nsWG   Ge+Gy  
  MMETSP0890-20130614|33528_1 245 TDIDHAVQLVGYGYDNTSKLSYWLVRNSWGTSWGEDGYIR 284
                  5689**********************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.99
# Mc/sec: 808.47
//
Query:       MMETSP0890-20130614|33534_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-51  172.7   0.0    9.9e-51  172.1   0.0    1.2  1  PF00676.15 Dehydrogenase E1 component
    1.3e-23   83.1   0.1      3e-23   81.9   0.1    1.6  1  PF02780.15 Transketolase, C-terminal domain
    5.9e-14   51.8   0.0    1.2e-13   50.8   0.0    1.5  1  PF02779.19 Transketolase, pyrimidine binding domain
    1.5e-06   27.7   0.9    6.6e-06   25.6   0.0    2.5  2  PF02775.16 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
  ------ inclusion threshold ------
      0.033   12.8   0.0      0.055   12.1   0.0    1.2  1  PF00456.16 Transketolase, thiamine diphosphate binding domain
       0.15   10.8   0.2       0.69    8.6   0.0    1.8  2  PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   4.3e-54   9.9e-51       2     299 ..     107     404 ..     106     405 .. 0.95

  Alignments for each domain:
  == domain 1    score: 172.1 bits;  conditional E-value: 4.3e-54
                  HHHHHHHHHHHHHHHHHHTTSSS--------HHHHHHHHHCS-TTSEEE--SS-HHHHHHTT--HHHHHHHHHT-T....T-TT----TT---BTT--B----S--SHHTTHHH--HHHHH...H------EEEEE----TTSHHHHHHHHHHHHCT--EEEEEEE-SEETTECGGHC-S-S-CGGGGGG---EEEEE----HHHHHHHHHHHHHHHH-----EEEEEE-------STT--GGGTS-CHHHHHHHHCC-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHTS----H CS
   PF00676.15   2 klmllrrmedalaalykrkkrigfvhlsagqealqvgiaaalekeDlvistYRehgvllargvsleevlaeltgke....kgkggsmheisyaekksrflggngivgaqvplvaGialaak...yegkkevailliGDGatnqGqffealnlAalwklpvifvveNNqyaisteaerssaskelakkargvgipgirVdGnDvlAvyqAvkeAaeraregkgPvLielvtYRyggHsesDdpstyrtreeveevrkkkdpikrlkehlvkkgvvseeelkeiekevrkeieeavkkaeekkepev 299
                  +++  r++e+a+a+ y +  ++gf+hl +gqe +  ++a  l ++D+  s+YReh ++l +gv+ e+++ael+ k     +g ggsmh i++++++  f gg + v+ q p++ G+a+      +e++++++++++G+G++ +G ++e+ln Aa  +lp++f +  N+ ai t +   ++ +++   ++ +g+pg ++dG+D+  v+q  + ++++ r+  +P ++ + tYR++gHs +D+   + ++ e + +r + dp++ +++       ++++ l+e++++v+ ++++av++a++++ p++
  MMETSP0890-20130614|33534_1 107 MMQFCRQFENACAQAYMQGSIRGFMHLDNGQETIPALVADRLVEKDIKYSYYREHTHALSSGVPAEKIMAELFAKDtgtcRGAGGSMH-IFDKQTN--FQGGWALVAEQLPYAVGAARSILldgIENDDRITVVFVGEGGAQNGRLAECLNAAAKESLPILFLIIDNGRAINTYTPDVAQNSDINLFGKHYGVPGAKIDGQDLKQVLQTGRCVIDYVRKKRKPAILQVHTYRFQGHSPADPEHERGRKFEKKWARIACDPLSLFEDNF----DLDKDMLNEVKQKVKLRVQAAVNFAKQSPPPPP 404
                  68999********************************************************************9999999********.**89888..*******************9988888*************************************************99999999999999*****************************************************88877766677778999******99876....47899999*********************9976 PP

>> PF02780.15  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   1.3e-26     3e-23       7     112 ..     656     762 ..     648     770 .. 0.94

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 1.3e-26
                  ETTECEEEEEESTHHHHHHHHHHHHHTTT-EEEEEEESEEESSBHHHHHHHHHHHSCEEEEESSECEEEEHCHHHHHHHHHSGGG-SSEEEEEEEESSSHHSS.HHH CS
   PF02780.15   7 regkdvtivayGsmveealeAaeeLakegisaevidlrtvkPlDeetidesvkktgrlvvveeavkigGigaevaaalaeegftkldapvrrvggpdvpipha.pal 112
                  +++k vt+v+y   v ea+ A+ e++++ +++ +i l ++kPlD e+i es+kkt++l++++e +++gG+ga ++aa++e+ ++ ld p++r++  d+p+p+a  ++
  MMETSP0890-20130614|33534_1 656 APEKSVTVVTYLHGVREAITAIPEIQAQSYDIDLIELHSLKPLDLEIIAESLKKTHKLIILDESTYSGGVGATISAAISENLYDLLDGPIKRLAMDDAPVPYAsSME 762
                  68899************************************************************************************************984443 PP

>> PF02779.19  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   5.1e-17   1.2e-13       5     175 ..     458     629 ..     454     632 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 5.1e-17
                  HHHHHHHHHHHHHCC-TTEEEEESS-H.HHHTTHHHHHHEGG--EGEEE--S-HHHHHHHH---TTCGTSEEEEEECEHHHHG...HHGGHHHHHHHHHHTT---EEEEEEE---.-.----TSS-SSHHHHHCTSTT-EEE--SSHHHHHHHHHHHHH-S-..-EEEEE-SSEE CS
   PF02779.19   5 wrkaeaealaellkedpevvllgaDva.rgtfsvrkgllhdqgegrvidsgisEqamlgfavGaalagpllviweaqfgdFangA.qiyadqairsgeakgklpvgvvtrlpigv.g.edGpehqsaeleaflrlipglkvvrPsdpaetkgllrraieredrkPvvlrlpkqll 175
                    +a+++a+ e++ +dp+  +  +D++ ++++   k  ++ +g  r  d  i E +++g a+G  ++g +++i+e++ ++F   +     ++  +   ++g+++++++++   g+   +   + +s+   a+   ipglk++  s+++ ++gl+++ i+  d++P +l+lp +l+
  MMETSP0890-20130614|33534_1 458 LGDAINLAILEEMIRDPSTTIHAEDLQaGSSYDIPKLTQQSFGVLRAADEIIDEGHFIGKALGEGMNG-YRPIVELMNANFGIYGmAELSSAGNTYATTGGQFKMPLTVLGAGGTaPnQALGAEHSQPFHAYVMGIPGLKICTASSAEMAYGLVKSMIR--DDGPGILFLPVKLM 629
                  5789***********************455555555556667799***********************.8***********8766545555555558999999***65555444413145579999*********************************..889******98876 PP

>> PF02775.16  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.9e-09   6.6e-06       2      90 ..     183     278 ..     182     331 .. 0.67
   2 ?   -2.3   0.1       1.1   2.6e+03      26      50 ..     565     590 ..     546     619 .. 0.65

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.9e-09
                  -TCHHHHHHHHHTTSTT-EEEE--SS-----HHCCCHHHCC.......TSTTS-EEEEE----TTTT.GGGHHHHH.HCT--EEEEEEE-SB---HHH CS
   PF02775.16   2 iGchtlwaarllkvkrprsyltsgglgtmGyglpaAiGakl.......akpdrevvaivGDGgflmi.lqelatav.rrnlpitvvvlnNegygmtgg 90 
                  +G++ ++   +  +++++++  +gg++    +lp+A+Ga++        + dr  v++vG Gg +   l+e  +a+ ++ lpi++++++N+   +t  
  MMETSP0890-20130614|33534_1 183 TGTCRGAGGSMHIFDKQTNF--QGGWALVAEQLPYAVGAARsilldgiENDDRITVVFVGEGGAQNGrLAECLNAAaKESLPILFLIIDNGRAINTYT 278
                  66666655555455555555..469***************977655433679*************9998776666505566*********98766554 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
                  SS-----HHCCCHHHCCTST.TS-EE CS
   PF02775.16  26 glgtmGyglpaAiGaklakp.drevv 50 
                  +lg+ G ++  A+Ga+  +p ++ v+
  MMETSP0890-20130614|33534_1 565 VLGAGGTAPNQALGAEHSQPfHAYVM 590
                  56666666666777666555334443 PP

>> PF00456.16  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05     0.055     139     297 ..     227     386 ..     218     402 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.4e-05
                  -SS--S--EEEEE----TT---HHHHHHHHHHTT-TTEEEEEEE-S----S-GCCTT-CHHHHHHHH---EEEEEE----HHHHHHH...HHHHCCSTTS-EEEEEE-------TTTTT-GGG------HHHHHHHHHH..HHT.TCHHHHHHHHHHHHCTT CS
   PF00456.16 139 gfdivdhyvyvllgDgclmEGvssEaislagvlkLgkLialyDdNkisidgeteisftedvakrfeaygWhvievedgedveeiakA...ieeAkaekdkPtlikvktviGfgspnkegkedvHGapLgedevaalkkklGfdeksfeipqevydaikekea 297
                  g +  d  + v++g+g  ++G   E  + a+   L  L  + D+ +     + +++ ++d++   + yg   ++  dg+d++++ +    + +  ++k kP++++v+t   +g  + ++ e+  G   +++  + +   l + e++f + +++ +++k+k++
  MMETSP0890-20130614|33534_1 227 GIENDDRITVVFVGEGGAQNGRLAECLNAAAKESLPILFLIIDNGRAINTYTPDVAQNSDINLFGKHYGVPGAK-IDGQDLKQVLQTgrcVIDYVRKKRKPAILQVHTYRFQGH-SPADPEHERGRKFEKKWARIACDPLSLFEDNFDLDKDMLNEVKQKVK 386
                  566778999*********************************98887666677788888998888889887777.588888887653222444455569**********99998.77788888899999998888888898888999999999999988877 PP

>> PF13292.1  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0003      0.69     120     178 ..     216     277 ..     209     287 .. 0.79
   2 ?   -0.9   0.0      0.25   5.6e+02     241     270 .]     300     333 ..     283     333 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0003
    PF13292.1 120 alGlakardlkg...ekekvvaviGDgaltgGmafealnnagelkkklivilNdNemsisen 178
                  a+G a++  l+g   +++ +v  +G g+  +G   e ln a++++  ++ ++ dN ++i++ 
  MMETSP0890-20130614|33534_1 216 AVGAARSILLDGienDDRITVVFVGEGGAQNGRLAECLNAAAKESLPILFLIIDNGRAINTY 277
                  555555544443311677888899********************************999865 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.25
    PF13292.1 241 pidGhdleelik....vleevkklkgpvllhvvt 270
                   idG+dl+++++    v++ v+k ++p +l+v+t
  MMETSP0890-20130614|33534_1 300 KIDGQDLKQVLQtgrcVIDYVRKKRKPAILQVHT 333
                  59********983333477788889999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:01.12
# Mc/sec: 1662.61
//
Query:       MMETSP0890-20130614|33551_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-13   48.2   0.9    1.2e-12   47.9   0.6    1.1  1  PF00106.20 short chain dehydrogenase
    2.4e-05   23.8   0.1    4.9e-05   22.9   0.1    1.5  1  PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
    2.8e-05   23.7   0.2    3.6e-05   23.4   0.2    1.1  1  PF08659.5  KR domain
      0.001   18.4   0.1     0.0012   18.1   0.1    1.1  1  PF01370.16 NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.14   11.7   0.9        0.2   11.2   0.1    1.6  2  PF00056.18 lactate/malate dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.6   4.4e-16   1.2e-12       2     118 ..      32     146 ..      31     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 4.4e-16
                  EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE.--TTSH.HHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHH CS
   PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvva.cDvadr.dalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawll 118
                   vl+TG++gg+G+a+A  L ++g+r l+ +  r  + g +e+++++e++g +v+ v  +D  +  d++ ++++e+      ld +++nagv+++   +  + +++e++la++  +   l
  MMETSP0890-20130614|33551_1  32 RVLVTGASGGIGAAIAVALGSRGCRLLLHYNCR--EVGVRETARRVEEAGGTVDGVVrLDFRSGvDKIWQIVDEVW--PIGLDTLINNAGVVTKRAASIASCDDFEATLAINTVAPYRL 146
                  69************************9999999..9**************88886555997765588999999998..778************99999999***********8887665 PP

>> PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   1.8e-08   4.9e-05      38      72 ..      30      61 ..      17      67 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.8e-08
    PF12242.3 38 GpkkvLviGaSsGyGlAsrialafgagadtigVsf 72
                 G k+vLv+GaS+G+G+A  ia+a g+    +  ++
  MMETSP0890-20130614|33551_1 30 G-KRVLVTGASGGIGAA--IAVALGSRGCRLLLHY 61
                 4.9**************..8888887766666666 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2   1.3e-08   3.6e-05       3     110 ..      33     137 ..      32     152 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.3e-08
                  EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EE.EEE--TTS.HHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHH CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevt.vvaaDvad.rdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavla 110
                  +LvtG+ gg+G+++a  L +rg r l+    +   +   ++  +++e+ g +v+ vv++D  +  d++ ++++ev      l+  ++ Agv+ +++ +  + +d++a+la
  MMETSP0890-20130614|33551_1  33 VLVTGASGGIGAAIAVALGSRGCRLLLHYNCR---EVGVRETARRVEEAGGTVDgVVRLDFRSgVDKIWQIVDEVWP--IGLDTLINNAGVVTKRAASIASCDDFEATLA 137
                  79*********************999888888...344444568999999999758999975415666666666654..469***************9999999999987 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   4.4e-07    0.0012       1      99 [.      33     146 ..      33     156 .] 0.67

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.4e-07
                  EEEE--------HHHHHHHHH-TEEE.......EESSCSTCCCCCCHHH........TBEEEB--TT.-HHHHHHHHHHH...T.SEEEE--S---.HHHCC...CSHHHHHHHHT---HHH CS
   PF01370.16   1 ilVtGatGfiGsalveallekgyevv.......nlirrtrseslatvri........rvelveldlt.dkdalerlfaee...qpdaVihlAaesg.vdass...edpadfieanvegtlnl 99 
                  +lVtGa+G iG+a++ al ++g + +       +          +t r+        +  +v+ld     d++ ++++e+     d+ i+ A+ +    as+   +d ++++ +n++  ++l
  MMETSP0890-20130614|33551_1  33 VLVTGASGGIGAAIAVALGSRGCRLLlhyncreV-------GVRETARRveeaggtvD-GVVRLDFRsGVDKIWQIVDEVwpiGLDTLINNAGVVTkRAASIascDDFEATLAINTVAPYRL 146
                  79**********************7744444432.......33333333455566542.588899998889999999999999999999999999854444411133344445555555555 PP

>> PF00056.18  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.2e-05       0.2       2      23 ..      32      53 ..      31      72 .. 0.90
   2 ?   -2.0   0.0      0.86   2.4e+03      92     109 ..     113     130 ..     109     141 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.2e-05
                 EEEEE---.----HHHHHHHHT CS
   PF00056.18  2 kvavvGaaGgvGqslalllklq 23
                 +v v+Ga+Gg+G+++a++l  +
  MMETSP0890-20130614|33551_1 32 RVLVTGASGGIGAAIAVALGSR 53
                 89***************99765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.86
                  HHHHHHHHHHHHHHHCTS CS
   PF00056.18  92 nkNakIfkelveaiakva 109
                   +Na+++++ +++ia + 
  MMETSP0890-20130614|33551_1 113 INNAGVVTKRAASIASCD 130
                  568888888888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.81
# Mc/sec: 461.52
//
Query:       MMETSP0890-20130614|33553_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-61  207.7   2.3    2.6e-61  207.1   1.6    1.2  1  PF03781.11 Formylglycine-generating sulfatase enzyme


Domain annotation for each model (and alignments):
>> PF03781.11  Formylglycine-generating sulfatase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   1.6   1.9e-65   2.6e-61      23     259 ..      71     321 ..      55     322 .. 0.92

  Alignments for each domain:
  == domain 1    score: 207.1 bits;  conditional E-value: 1.9e-65
                  T----S-EEEB-.--EEE-SS--BHHHHHHHHHH-----H...............................---TTEEEE---BTTB---B-------TTSB--S--HHHHHHHHHH---......B---HHHHHHHH--------S-----S----------TTT-B-----...--S.---TT-S-B-----B-------EEEEEE--THHHH--SBS---------EEEE---TT--T...T--TTSTT--.EEE-TT----------E CS
   PF03781.11  23 ndeeapahevtv.raFaidkteVTnaqyaafveatgyete...............................aasqwwaeveganvrhpegrksdikkradhPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArggkkgreypwgdelkpakniwqGslakfekeaaaadsqngrtspvgsfppnalGlyDmaGNvwEWtsdwykkyalapaeelsqeaekgelrvvkGgswlkae...lssllraafrasaetpdtaasdvGfRlv 259
                  +d  ++ +  ++ +++aidkt VTn+q+++f+++t+y+te                               +++ ww  v ga++r+peg++s  + r +hPv hVs++Da+a++ w+g+      rLPte Ewe+AArgg +++ +pwgd+  +  n+ ++++ +f+  +  +d++ g t+pv+++ppn+lG+y+++GNvwEWt    +            +  ++++r ++Ggs++++     ++ lr+++r+ + tpd+ +++ GfR++
  MMETSP0890-20130614|33553_1  71 KDGAKASRHSRLkKSYAIDKTCVTNEQFKQFIRETKYVTEaenfrwsfvlellasnetmnitdgkdglgrvESAPWWMAVWGAHWRKPEGPDSSLRGRGKHPVIHVSYNDAKAFCTWAGR------RLPTEIEWEVAARGGLEDEPFPWGDADHDTYNRLNSWEGDFPHHNSMRDGYIG-TAPVDAYPPNPLGIYNTLGNVWEWTEY--D-----------DPSAAQDKRPLRGGSYVDTIdgrFNHALRVSTRMDQ-TPDSGSANTGFRCA 321
                  4556667777888*********************************************************9999**********************************************......**************************99777666666669*************.************************964..3...........567889999********9878999*********666.8************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.97
# Mc/sec: 842.43
//
Query:       MMETSP0890-20130614|33566_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-18   64.6   0.0    1.2e-17   63.9   0.0    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   8.5e-22   1.2e-17      13      99 .]      79     171 ..      32     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 8.5e-22
                  --E-EEEEEEEESSSCEEEEEEE.T--EEEEEE-EE.....SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----..CSEEEEEEEEEE- CS
   PF03171.15  13 pekglglgpHtDnenriltillq.ddggglqfrked.....kwidvppdpvallvnfgdvllvltngryksvlHrvlpnt..rgeRislafflrp 99 
                   +k lg+  H D   + ltil q  + + lq+  +      kwidv+p p+al+vn+gd+l+vl+n+  k+++Hrv+++t  ++ R+s++ffl+p
  MMETSP0890-20130614|33566_1  79 RGKRLGVNRHFDA--GGLTILRQdANISALQMNLHRpeqkpKWIDVSPIPGALTVNCGDMLQVLSNDVIKAPEHRVKATThpGKVRYSAPFFLNP 171
                  5788999******..********98899999988889999****************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 876.05
//
Query:       MMETSP0890-20130614|33573_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       623  (0.0455676); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.40s 00:00:01.31 Elapsed: 00:00:00.76
# Mc/sec: 1680.60
//
Query:       MMETSP0890-20130614|33579_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-07   30.5   0.8    4.1e-07   29.6   0.5    1.5  1  PF00397.21 WW domain
     0.0062   15.7   0.0     0.0097   15.1   0.0    1.3  1  PF10229.4  Uncharacterized conserved protein (DUF2246)


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.5     6e-11   4.1e-07       4      31 .]      86     113 ..      84     113 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 6e-11
                  SEEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21   4 gWeersddd.dGrvYYyNheTgetqWekP 31 
                  +W e +d + +G +Y++N+ T+ ++We+P
  MMETSP0890-20130614|33579_1  86 EWAEFVD-PeTGCTYWFNAVTKASSWEPP 113
                  4*99996.448*****************9 PP

>> PF10229.4  Uncharacterized conserved protein (DUF2246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-06    0.0097     193     225 ..      75     108 ..      48     118 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-06
    PF10229.4 193 keicsrLrseGyWaDFidPssGraf.fgpytnat 225
                   e ++ Lr+ G Wa F+dP +G  + f   t+a+
  MMETSP0890-20130614|33579_1  75 EETAEPLRTVGEWAEFVDPETGCTYwFNAVTKAS 108
                  456678****************999344555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       661  (0.048347); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 894.64
//
Query:       MMETSP0890-20130614|33584_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0026   17.1  23.3     0.0033   16.8  16.2    1.1  1  PF00038.16 Intermediate filament protein
  ------ inclusion threshold ------
      0.016   15.4  21.0       0.23   11.7   4.8    2.2  2  PF06156.8  Protein of unknown function (DUF972)
       0.29   10.1  27.8       0.41    9.6  18.6    1.6  1  PF13851.1  Growth-arrest specific micro-tubule binding
       0.36   11.3   3.1       0.24   11.9   0.3    2.0  2  PF10818.3  Protein of unknown function (DUF2547)
        0.9    7.6   6.7          1    7.5   4.7    1.0  1  PF08192.6  Peptidase family S64
        1.3    6.2   9.1        1.5    6.0   6.3    1.0  1  PF02514.11 CobN/Magnesium Chelatase
        1.9    6.5   9.0          2    6.4   6.3    1.1  1  PF03115.9  Astrovirus capsid protein precursor
        4.5    6.4  25.2      0.031   13.5  10.0    2.2  2  PF11180.3  Protein of unknown function (DUF2968)
        6.4    6.8   8.6       0.62   10.0   1.9    2.2  3  PF07374.6  Protein of unknown function (DUF1492)


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  16.2   2.1e-06    0.0033      42     164 ..      34     166 ..      11     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
   PF00038.16  42 saevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklr............kdldeatlarvdleakveslkeeleflkklheeEvkelqkqikeqvnvevdaark 164
                  ++e      + e+ ++ +rk l ++ ++  r++ +  n+r+e + l++  e e+ + e++E+el+  +            ++ld++ l ++ l + +e+ +e  +  kk  eeE+++l+ +  ++  +e+ ++++
  MMETSP0890-20130614|33584_1  34 QEELLDRVAILERRIRLMRKDLVQTRQDVVRIRKDTTNARQETKALKKEAEAERVQHEALERELERHKksnghtsdeqddQVLDQLILVKTKLAQAMEE-QERRKLEKKKLEEELAKLKCNF-ATSMAELTDEEE 166
                  455555667899*********************************************************************************999987.89999**************998.555556655554 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.8   0.00015      0.23       2      74 ..      33     105 ..      32     111 .. 0.78
   2 ?    9.0   4.9     0.001       1.6      15      69 ..     110     164 ..     106     180 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00015
    PF06156.8   2 dkkelfdklseleeqleelleeleelkkelkelleenaelkleneklrerleeleeeekkkekkkkkkklgeg 74 
                  +++el+d+++ le++++ + ++l + ++++ ++ ++ ++ + e ++l+++ e ++ ++++ e++ + +k ++g
  MMETSP0890-20130614|33584_1  33 EQEELLDRVAILERRIRLMRKDLVQTRQDVVRIRKDTTNARQETKALKKEAEAERVQHEALERELERHKKSNG 105
                  5789********************************************9987766544444444433333333 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.001
    PF06156.8  15 eqleelleeleelkkelkelleenaelkleneklrerleelee......eekkkekkkkkk 69 
                  eq +++l++l  +k++l++ +ee+++ kle +kl+e+l++l+       +      + + +
  MMETSP0890-20130614|33584_1 110 EQDDQVLDQLILVKTKLAQAMEEQERRKLEKKKLEEELAKLKCnfatsmA------ELTDE 164
                  56689999********************************9884543331......22222 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  18.6   0.00027      0.41      39     178 ..      16     155 ..       8     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00027
    PF13851.1  39 lkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvqqktelknllLekKlealneelekke...aqLeevlaaanldpa 178
                  ++++++ +  ++ + ++e+++l + ++ +e++ + ++k+l q  +d     ++++  ++ ++e k+lk+e e  + + e +erE ++ +k + ++ ++  +++  + +l+++Kl++ +ee e+++   ++Lee la+ + + a
  MMETSP0890-20130614|33584_1  16 KEEEAALSYLRVVQCETEQEELLDRVAILERRIRLMRKDLVQTRQDV---VRIRKDTTNARQETKALKKEAEAERVQHEALERELERHKKSNGHTSDEQDDQVLDQLILVKTKLAQAMEEQERRKlekKKLEEELAKLKCNFA 155
                  55555555556677888999999999999999999999999988887...689999999***************************************************************996222457777776666655 PP

>> PF10818.3  Protein of unknown function (DUF2547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.2   1.8e+03      40      40 ..      73      73 ..      22     100 .. 0.62
   2 ?   11.9   0.3   0.00016      0.24      26      84 ..     102     161 ..      95     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.2
    PF10818.3 40 k 40
                 +
  MMETSP0890-20130614|33584_1 73 R 73
                 1 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00016
    PF10818.3  26 asea.eneneqetvikqqvaqsaqiaqevqqQslfiaelklesekllkikpqflakvlrf 84 
                  +s++ +++++ ++v+ q ++ +++ aq +++Q++   e k+  e l+k k +f +++ ++
  MMETSP0890-20130614|33584_1 102 KSNGhTSDEQDDQVLDQLILVKTKLAQAMEEQERRKLEKKKLEEELAKLKCNFATSMAEL 161
                  45553556667899******************9998888888999999999999988765 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.7   0.00067         1      64     190 ..      39     164 ..       6     175 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00067
    PF08192.6  64 qsssifskgslnlnpsisntnesatsvskksgekvekslfskkdskkslstkqssytslnavaeeesktsqasskksslessqplqtlnikeeseeskekeeeesvedelkeLeedlaaimdqinns 190
                     +i ++  + ++ +  +t + +  + k++++  ++++   k+  ++ ++++  +    + +++++ +++++++++ l++  +++t  +++ +e++++k e++++e+el++L+ + a+ m ++ ++
  MMETSP0890-20130614|33584_1  39 DRVAILERRIRLMRKDLVQTRQDVVRIRKDTTNA-RQETKALKKEAEAERVQHEALERELERHKKSNGHTSDEQDDQVLDQLILVKTKLAQAMEEQERRKLEKKKLEEELAKLKCNFATSMAELTDE 164
                  4555566666666667777666666664444333.333333344445555555554333444445555556666677777777777777777888888888999***************99998765 PP

>> PF02514.11  CobN/Magnesium Chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.3   0.00096       1.5     585     701 ..      68     181 ..       5     185 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00096
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
   PF02514.11 585 egeelvelvlailrddaeseveeeslaellaealgld....arseaaalelleevaknltspseaeeeklneseeatktqeavevaelleealelaerla.saseEieallkALdGkyippg 701
                  +  + ++  +a+ ++ ++++v++e l++ l ++++ +    +++++++l++l  v ++l     a++++++e+++ +k  ++  ++el++ + + a+++a  ++eE +++ +AL+ + i+pg
  MMETSP0890-20130614|33584_1  68 DTTNARQETKALKKEAEAERVQHEALERELERHKKSNghtsDEQDDQVLDQLILVKTKL-----AQAMEEQERRKLEK--KKL-EEELAKLKCNFATSMAeLTDEEERRVRNALKKETIQPG 181
                  33333333333333332223444444444444444444222333333333333333333.....33333333322222..222.345666677777777768999****************9 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.3    0.0013         2     638     745 ..      49     153 ..      12     179 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0013
    PF03115.9 638 felrtalpeekaelseleeravedaeepaedlvseeetdtetestedesdeldrfdlkassgsesededennrvtllstlinqgisveratkitkrafPtlaekvrrs 745
                    +r+ l ++++ ++ +++++++   + +e +  ++e + e  ++e  + el+r +  +++ s+++d++  ++ +l++t + q ++ ++  k+ k+       k + +
  MMETSP0890-20130614|33584_1  49 RLMRKDLVQTRQDVVRIRKDTTN---ARQETKALKKEAEAERVQHEALERELERHKKSNGHTSDEQDDQVLDQLILVKTKLAQAMEEQERRKLEKKKLEEELAKLKCN 153
                  44667777777777777777775...33333444555555555555556677788888888888888878899****************9999998877665555554 PP

>> PF11180.3  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  10.0     2e-05     0.031      92     182 ..      12     102 ..       5     111 .. 0.91
   2 ?   -1.8   2.4         1   1.5e+03     140     180 ..     110     150 ..     102     171 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
    PF11180.3  92 dfarqtaqLadveirraqleaqkaqlerliaasearaerLqadlelareQeaqvaarqkqarkeaaaLeaqreaaqaqLrklqrqirqLqa 182
                  ++a++ ++ a  ++r +q e ++++l + +a  e r++ +++dl ++r+    + +   +ar+e++aL+++ ea + q ++l+r+ +  ++
  MMETSP0890-20130614|33584_1  12 NVAAKEEEAALSYLRVVQCETEQEELLDRVAILERRIRLMRKDLVQTRQDVVRIRKDTTNARQETKALKKEAEAERVQHEALERELERHKK 102
                  5677888899999**********************************************************************99876555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1
    PF11180.3 140 eQeaqvaarqkqarkeaaaLeaqreaaqaqLrklqrqirqL 180
                  eQ+ qv ++   +++ +a+  +++e+ +   +kl+ +  +L
  MMETSP0890-20130614|33584_1 110 EQDDQVLDQLILVKTKLAQAMEEQERRKLEKKKLEEELAKL 150
                  55555555555555444444444444444444444444444 PP

>> PF07374.6  Protein of unknown function (DUF1492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.8   1.2e+03      39      72 ..      35      68 ..      13      82 .. 0.66
   2 ?   -0.4   0.2      0.76   1.1e+03      32      43 ..      83      94 ..      44     108 .. 0.58
   3 ?   10.0   1.9   0.00041      0.62      10      67 ..     101     159 ..      94     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.8
    PF07374.6 39 aeaikrklelqrlidklenpdsrtiLrmvYidkl 72
                  e + r   l+r i  +++   +t   +v i k 
  MMETSP0890-20130614|33584_1 35 EELLDRVAILERRIRLMRKDLVQTRQDVVRIRKD 68
                 5555555566666666666666665555555554 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.76
    PF07374.6 32 eeieqktaeaik 43
                  e e+   ea++
  MMETSP0890-20130614|33584_1 83 AEAERVQHEALE 94
                 233444444444 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00041
    PF07374.6  10 dkvqGGqkkkkDd.vYveliamkeeieqktaeaikrklelqrlidklenpdsrtiLrmv 67 
                  +k +G +  ++Dd v  +li +k ++ q+  e  +rkle ++l ++l + +     +m 
  MMETSP0890-20130614|33584_1 101 KKSNGHTSDEQDDqVLDQLILVKTKLAQAMEEQERRKLEKKKLEEELAKLKCNFATSMA 159
                  5666766666666266689************************9999998877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2094  (0.15316); expected 273.4 (0.02)
Passed bias filter:                      593  (0.0433733); expected 273.4 (0.02)
Passed Vit filter:                        93  (0.00680222); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:01.10
# Mc/sec: 407.38
//
Query:       MMETSP0890-20130614|33589_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.31s 00:00:00.76 Elapsed: 00:00:00.76
# Mc/sec: 744.13
//
Query:       MMETSP0890-20130614|33583_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   17.3   5.2     0.0014   17.3   3.6    1.8  2  PF10310.4  Protein of unknown function (DUF2413)
     0.0062   16.2   0.7     0.0062   16.2   0.5    3.1  3  PF00430.13 ATP synthase B/B' CF(0)
     0.0063   16.2   0.6      0.012   15.2   0.4    1.5  1  PF06057.6  Bacterial virulence protein (VirJ)
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.083   12.7   0.0    2.2  1  PF02472.11 Biopolymer transport protein ExbD/TolR
      0.046   12.9   0.0      0.098   11.8   0.0    1.5  1  PF04811.10 Sec23/Sec24 trunk domain
        2.5    8.1  11.9        5.6    6.9   3.7    2.3  2  PF14058.1  PcfK-like protein


Domain annotation for each model (and alignments):
>> PF10310.4  Protein of unknown function (DUF2413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.29   6.7e+02     143     166 ..      93     116 ..      67     138 .. 0.48
   2 !   17.3   3.6   6.1e-07    0.0014      29     167 ..     226     389 ..     218     422 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.29
    PF10310.4 143 avkqAeqavkeiqqneeakkqaeq 166
                  a +  ++  ++i+++ +++k++++
  MMETSP0890-20130614|33583_1  93 AEREEQELLEKIRKSSSSTKKEDN 116
                  222222222222222222222222 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 6.1e-07
    PF10310.4  29 kkdediLefLdeleksekakkkkkaeeaekaetprvekkkskkkesekaskeekeakprkseeseesseekskapeteseee.eeeeetpepiasiggwWs.........................Wgs.....ilstasslasaavkqAeqavkeiqqneeakkqaeqv 167
                  +k+ed+ ++Ld+l + +k+k+k    +     +++v +kk+kkke  +++++e++++++ks+++    ++ +++++ +  ++    + t + i+ i+  Ws                         W +     +  +a+++ + a + A+  v+ ++   e +++++++
  MMETSP0890-20130614|33583_1 226 DKQEDFTDELDKLVAANKNKTKADIDHS----KKKVDSKKAKKKEGRDSKSKESHQSTSKSTQKDGVLSTFHFSKNVQIIADsIVDKLTDNLIEPISATWSrlatnstsgallldlghvilnafdgWTGdprdfLHRQAERAQARALRNATRLVEHLHA--ELTLKKHKI 389
                  6899***********8777776633333....4567888888888777778888888888888888777766666555555535788899999********9999999999999999999999999654333337788999999999999999999988..444433333 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   5.1     0.004         9      42     100 ..      72     130 ..      65     136 .. 0.84
   2 ?   -2.6   1.4       1.8     4e+03      63      81 ..     246     264 ..     229     286 .. 0.43
   3 !   16.2   0.5   2.7e-06    0.0062      80     129 ..     358     407 ..     353     410 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.004
   PF00430.13  42 aeerlkeaaellaeaeqqleqArkeaseiienakkeaqklkeeilaeaekdierllesa 100
                  +e +++ ++ l aea+ +l++A+ e +e++e+ +k     k+e + +++ +     +++
  MMETSP0890-20130614|33583_1  72 SETSREATEVLAAEARLALRAAEREEQELLEKIRKSSSSTKKEDNVQTQISPALEWAQS 130
                  6788888888999********************************99998765555555 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.8
   PF00430.13  63 Arkeaseiienakkeaqkl 81 
                  ++++++  +++  ++++k 
  MMETSP0890-20130614|33583_1 246 TKADIDHSKKKVDSKKAKK 264
                  2222222222222222222 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 2.7e-06
   PF00430.13  80 klkeeilaeaekdierllesakaeiekekeqalaelrkqvaaLalqiaek 129
                  +++e ++a+a + ++rl e  +ae+  +k ++  +lr q+aaL+++ +++
  MMETSP0890-20130614|33583_1 358 RQAERAQARALRNATRLVEHLHAELTLKKHKINHDLRLQIAALSVNSTSS 407
                  67889999999**********************************98876 PP

>> PF06057.6  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   5.5e-06     0.012     105     191 ..     225     311 ..     219     313 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.5e-06
    PF06057.6 105 lskkadfevsvegwlgleeegkagdivpelkkldaklvqciygkeekdeacpslkqkvvevvalpgghhfdedyealakrileglka 191
                  + k+ df  ++   ++++++++++di +  kk+d+k+ +   g++ k + + ++++k +++  + ++ hf ++++ +a+ i+++l++
  MMETSP0890-20130614|33583_1 225 FDKQEDFTDELDKLVAANKNKTKADIDHSKKKVDSKKAKKKEGRDSKSKESHQSTSKSTQKDGVLSTFHFSKNVQIIADSIVDKLTD 311
                  67899999***************************************************************************9976 PP

>> PF02472.11  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05     0.083      16      68 ..       8      74 ..       6     306 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
   PF02472.11 16 vvflLLifFmltatlkkpeplqvdlPsskstqkeveekdlirisisadgrif................l 68
                 +++lLLi F+lt+ l +++ l+v+    +st  ++ ++ ++++s+++ g +                 +
  MMETSP0890-20130614|33583_1  8 MFLLLLIAFLLTSVLGNTS-LDVACGHLVSTG-QTVKTWATELSLKDTGDLIpngevlcaralveyseT 74
                 678999***********98.*****8888888.599999999999988776633333344444444441 PP

>> PF04811.10  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.3e-05     0.098      90     189 ..      92     191 ..      46     197 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.3e-05
                  CCHHHHHHHHHHHHH.CTTT-..---------HHHHHHHHHT..TS-EEEEEEE-S------.--S-SSTTS-CCCHHTT.-TTHHCHCHHHHHHHHHHCC CS
   PF04811.10  90 eseavledlLeelpe.mfavtagkrperalgpalkaavellkavetggkiivfagslptvgaggklksredeslldidkekaklvkkadkfYkkLakecvk 189
                  ++e + ++lLe++ +   +++++ + ++ + pal+ a+++   ++   k    + +++t+++g  + + +d++l+ i++ + k +  + k+Y ++++ c+ 
  MMETSP0890-20130614|33583_1  92 AAEREEQELLEKIRKsSSSTKKEDNVQTQISPALEWAQSAAR-IFLRIKWAHKIDAPATLDVGEPVITCKDKQLSVIASSSRKVFTLDLKTYAQISDSCSW 191
                  45555579*******888888899999*************99.666778888889******************************************9985 PP

>> PF14058.1  PcfK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3      0.01        24     104     136 ..      91     122 ..      62     123 .. 0.71
   2 ?    6.9   3.7    0.0025       5.6      72     139 ..     226     293 ..     220     294 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.01
    PF14058.1 104 eaekayqeeelakkkkkskkskkkaekkqgqls 136
                   a+++ ++e l+k++k+s+ +k k +++q+q+s
  MMETSP0890-20130614|33583_1  91 RAAEREEQELLEKIRKSSSSTK-KEDNVQTQIS 122
                  4667777788888888877665.8999999987 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0025
    PF14058.1  72 eddikaekpieckvtvnktielteeekkeakkeaekayqeeelakkkkkskkskkkaekkqgqlsLFD 139
                  +++++   + ++ v+ nk+  + +   +++k  ++ka+++e    k k+s++s+ k+ +k+g ls F 
  MMETSP0890-20130614|33583_1 226 DKQEDFTDELDKLVAANKNKTKADIDHSKKKVDSKKAKKKEGRDSKSKESHQSTSKSTQKDGVLSTFH 293
                  67777777788888888875555556666666666666666666666666666677888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1449  (0.105983); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.83
# Mc/sec: 1238.60
//
Query:       MMETSP0890-20130614|33595_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-12   45.6   0.0    8.4e-12   45.1   0.0    1.3  1  PF00169.24 PH domain
      0.002   17.8   0.1     0.0032   17.1   0.1    1.4  1  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   1.2e-15   8.4e-12       1     103 [.      81     180 ..      81     181 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 1.2e-15
                  CSBEEEEEEEE....TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   1 vikeGyllkks....ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                  +ik Gyl k +    ++  +wk+r++vL +n L+y  ++  ++ +apkg+++ln + + +  ++      + +n f+i      ++++ aes++e+ +W++ +++l+
  MMETSP0890-20130614|33595_1  81 IIKTGYLNKLGgnkgGGTGNWKRRFMVLSDNLLYYENEEAYENGAAPKGKVSLNAIYCPTPNEN------NPENEFVIYAIPY-EFIVRAESKQEMDEWLSIFQKLQ 180
                  5899************************999888777777799*************88888886......7********9999.*****************999875 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   4.7e-07    0.0032      50     112 ..       2      61 ..       1      62 [. 0.91

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.7e-07
                  HHHHHTTTSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHH.SHHHHHHHHC CS
   PF00787.19  50 kLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrk.sevltsFLev 112
                  +L +k  + ++ ++P+k+l +       e+ ++r+ +L +++ + l++p   k  + ++sFL+v
  MMETSP0890-20130614|33595_1   2 HLDKKVYGKMVAEFPPKSLGQL----TLEQMDQRQTKLKDWFDEFLTMPITPKvLQQVYSFLQV 61 
                  566777788999******9886....9**************************99*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.33s 00:00:00.80 Elapsed: 00:00:00.69
# Mc/sec: 632.08
//
Query:       MMETSP0890-20130614|33605_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   15.4   0.4     0.0092   14.5   0.3    1.3  1  PF14249.1 Tocopherol cyclase


Domain annotation for each model (and alignments):
>> PF14249.1  Tocopherol cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   6.8e-07    0.0092      40     101 ..     244     305 ..     231     310 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.8e-07
    PF14249.1  40 aaqilgaedkylcrtfpdvkkFwasreelaleklalahaekkelklkekllepeefeervee 101
                  aaq+l   d yl ++ +d +++ ++ +e  l + a+ ++++++++++++++++ +f++++++
  MMETSP0890-20130614|33605_1 244 AAQVLRDADAYLSQQENDLRRYRSNVQEFRLAQDATLRKSSSSSQVQQQQVDAPSFQKQIRQ 305
                  89******************************99999999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       865  (0.063268); expected 273.4 (0.02)
Passed bias filter:                      385  (0.0281597); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.80
# Mc/sec: 937.57
//
Query:       MMETSP0890-20130614|33614_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 294.63
//
Query:       MMETSP0890-20130614|33608_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-34  117.0   0.0      1e-33  116.5   0.0    1.2  1  PF00069.20 Protein kinase domain
      3e-29  101.8   0.0    4.5e-29  101.2   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    0.00029   20.5   0.0       0.34   10.5   0.0    2.4  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   2.2e-37     1e-33       4     256 ..      99     380 ..      97     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 116.5 bits;  conditional E-value: 2.2e-37
                  EEEEE----EEEEEEEETTCCE..EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEE.EEEE--SC-.....EHHHHHH...........HHCCB-HHHHHHHHHHHHHHHHHHHHT......CEE-S--SGGGEEEETT--EEE------EEE...........CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC..---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHT CS
   PF00069.20   4 leklGsGsfGkVykakkkktgk..kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdely.lvleyvegg.....dlfdllk...........kegklseeeikkialqilegleylHsn......giiHrDLKpeNiLldkkgelkiaDFGlakkl...........eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyellt..gklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilk 256
                   + + sG  ++Vy++++ + gk  ++A+K+l+  ++k+++e +a++ E+++l  l+H ni++l++v  + ++l   +l++v ++     +l    k             +k+  +   ++a  +   l +lHs       + +HrDLKpeN+ l+++g+lk+ DFGla +l            +   klt  +g+++YmAPE  +   ey+   Dv+s++++ +el+   gk+  + + ++ q+ +i+ +l+++l+ d+++     + l +l +  +++d +kR++++ ++k
  MMETSP0890-20130614|33608_1  99 DKPVASGCQAHVYRVEHAEHGKqmIYALKVLQPCHAKKTEELKAFQrEVNLLSLLKHHNICQLVGVGSTPNKLPaAMLDWVAQTfqeafKL----KevgqnemaraeVLEKFPSRARIRLAIDLTDVLFFLHSGdaitghATLHRDLKPENVGLTSTGKLKLLDFGLAVVLdlsenkghasqVNVTYKLTGCTGSPRYMAPENAK-FLEYGIGTDVYSFAILAWELFAlqGKPYANLNITQHQRLVINGNLRPPLPVDSWD-----PALIQLFSTAWHRDFKKRPSCMGCCK 380
                  578999**********999888779**********999998887767**********************7766635666666644433433....145446666555566779999999**************8788988999*************************999******99986666779999************99.********************98645555555577788888899999999999874.....59******************987776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   9.9e-33   4.5e-29       4     255 ..      99     378 ..      97     382 .. 0.79

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 9.9e-33
                  EEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBE..SSSS.EEEEEE---B-.....-HHHHHHHT.....GTTGSBHHHHHHHHHHHHHHHHHHHHTT......EEEST-SGGGEEEETTTEEEE-----CEES.......TTTSCE......EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHH.HTT-BS---.TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
   PF07714.12   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvct..keep.llivteyvkgG.....dLlefLrkk.....ekekltlkdllkfalqiakGmeyLeskk......lvHrdLaarNvLleeekvvkisDfGLardi.......ekddyy......kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlell.kegkrlekp.ekcpeelyelmkqCweeepeeRptfkel 255
                  +k + +G  ++V++ ++   ++ k++  a+K+l+    ++ ee ++f++e+++++ lkh+ni +l+gv +  +  +     +++v++      +L+e+ +++       ek+  +  +++a+++ + + +L+s +       +HrdL   Nv l+++ + k+ DfGLa  +       +           +k ++++ + ++mapE  k  ++ + +Dv+sf +l wE+f l  +py++l+ ++  +l+ + + r + p +++ + l +l ++ w+++ ++Rp+   +
  MMETSP0890-20130614|33608_1  99 DKPVASGCQAHVYRVEHA--EHGKQMIYALKVLQPchAKKTEELKAFQREVNLLSLLKHHNICQLVGVGStpN--KlPAAMLDWVAQTfqeafKLKEVGQNEmaraeVLEKFPSRARIRLAIDLTDVLFFLHSGDaitghaTLHRDLKPENVGLTSTGKLKLLDFGLAVVLdlsenkgH----AsqvnvtYKLTGCTGSPRYMAPENAKFLEYGIGTDVYSFAILAWELFALQGKPYANLNITQHQRLViNGNLRPPLPvDSWDPALIQLFSTAWHRDFKKRPSCMGC 378
                  577899999****99999..89999********764345556699***********************99533..3333334444433111125655555448888888999999*****************97633333378************************998866644431....12234446777888999****************************************88888887747777877772557789*****************97655 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00049       2.2       4      84 ..     101     191 ..      99     235 .. 0.70
   2 !   10.5   0.0   7.4e-05      0.34     168     197 ..     236     264 ..     194     268 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00049
                  EEE--SSEEEEEEEETT.....TEEEEE...ESSC..CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSC...EEEEEE---HHBCCT CS
   PF01636.18   4 elsgGasnrtyrvttga.g...ryvlrr...arpa..raaeelrrevallrlLakagipvPevlagdtdddvlgl...lfalleyvpgevler 84 
                  ++++G   ++yrv++ + g    y+l++   ++++  +    ++rev ll lL  ++i   +++  + + + l+     +++++++++  l +
  MMETSP0890-20130614|33608_1 101 PVASGCQAHVYRVEHAEhGkqmIYALKVlqpCHAKktEELKAFQREVNLLSLLKHHNI--CQLVGVGSTPNKLPAamlDWVAQTFQEAFKLKE 191
                  7899**********999878675556666665555578899999************99..488886666666665666666666666555555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 7.4e-05
                  EB-SS-SGGGEEEETTTTEEEE---TT-BB CS
   PF01636.18 168 llHgDlhpgNllvdpddgrvgviDfedagl 197
                   lH+Dl+p N+ ++++ g++ ++Df++a +
  MMETSP0890-20130614|33608_1 236 TLHRDLKPENVGLTST-GKLKLLDFGLAVV 264
                  58************44.5555*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       373  (0.027282); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.45s 00:00:01.18 Elapsed: 00:00:00.77
# Mc/sec: 1279.09
//
Query:       MMETSP0890-20130614|33619_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.033   13.7   0.0    1.3  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.4e-06     0.033       4      63 ..     120     181 ..     117     192 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.4e-06
                  EEEEEEEETTS.EEEEEEECSTTSSTTEEEE.SBEEETTTTSHHHHHHHHHHHHHHS-EEEE CS
   PF00293.23   4 avsvillnedg.kvLlvqrsrskltapglwe.fPgGkvdkgEspeeaAvRElkEEtGidlek 63 
                  +v +++ + +g  +++ +r+  k t+pgl+  + +G+ + g +p e +++E+ EE+Gi+ e 
  MMETSP0890-20130614|33619_1 120 HVNGFCKTQTGlSLWVAKRALDKPTWPGLLDhIVAGHQPVGMTPSENVIKEAGEEAGIPEEL 181
                  67777888888999**************997255666666******************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 878.66
//
Query:       MMETSP0890-20130614|33628_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-25   86.8  21.9    6.1e-09   35.2   0.8    4.1  5  PF13414.1  TPR repeat
    9.3e-23   78.1   4.8    9.7e-06   25.0   0.0    5.1  5  PF07719.12 Tetratricopeptide repeat
      2e-19   68.2   1.2    6.4e-05   23.1   0.2    4.6  4  PF13428.1  Tetratricopeptide repeat
    2.4e-18   64.7   7.7    0.00033   20.0   0.1    5.2  5  PF00515.23 Tetratricopeptide repeat
    1.3e-17   63.3  23.0    3.4e-07   29.9   0.7    4.6  5  PF13424.1  Tetratricopeptide repeat
    2.9e-15   56.3   6.1    0.00018   21.9   0.0    3.7  5  PF13432.1  Tetratricopeptide repeat
    7.7e-15   54.1   2.3     0.0025   18.0   0.0    5.0  4  PF13174.1  Tetratricopeptide repeat
    2.8e-12   45.3   3.9       0.11   12.2   0.0    5.4  5  PF13181.1  Tetratricopeptide repeat
    1.1e-11   43.4   1.7     0.0047   16.5   0.0    4.6  4  PF13176.1  Tetratricopeptide repeat
    5.4e-10   39.1   6.5    5.2e-06   26.4   1.2    2.6  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    4.2e-08   32.6   4.4        0.2   11.8   0.0    5.9  5  PF13431.1  Tetratricopeptide repeat
    2.6e-07   30.2   0.7       0.01   15.6   0.1    3.1  3  PF13371.1  Tetratricopeptide repeat
      8e-07   28.6   0.9      0.056   13.2   0.0    4.3  4  PF13374.1  Tetratricopeptide repeat
      1e-06   27.9   1.7    5.7e-06   25.4   1.2    1.8  1  PF13429.1  Tetratricopeptide repeat
     0.0015   17.2   0.0      0.013   14.1   0.0    1.9  2  PF09295.5  ChAPs (Chs5p-Arf1p-binding proteins)
     0.0035   17.1   0.1        1.2    9.2   0.0    3.8  4  PF01535.15 PPR repeat
     0.0064   15.1   0.3      0.052   12.1   0.1    2.0  2  PF12569.3  NMDA receptor-regulated protein 1
     0.0082   15.5   0.7       0.41    9.9   0.1    2.8  2  PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
     0.0093   16.4   9.5         10    6.8   0.0    5.0  5  PF08238.7  Sel1 repeat
     0.0097   15.2   0.6        1.8    7.8   0.0    2.4  2  PF13525.1  Outer membrane lipoprotein
  ------ inclusion threshold ------
        0.1   12.3   2.9         21    4.9   0.1    3.8  4  PF04212.13 MIT (microtubule interacting and transport) domain
        3.8    7.2   6.6         29    4.4   0.0    3.6  3  PF07720.7  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.4   6.1e-09   3.8e-06      17      68 ..       3      53 ..       2      54 .. 0.91
   2 !   35.2   0.8   9.8e-12   6.1e-09       3      64 ..      23      83 ..      22      88 .. 0.94
   3 !   18.7   0.1   1.5e-06   0.00091       3      69 .]      57     156 ..      55     156 .. 0.90
   4 !   29.1   0.0   8.4e-10   5.2e-07       9      69 .]     131     190 ..     130     190 .. 0.95
   5 !   17.8   0.8   2.7e-06    0.0017      12      51 ..     168     207 ..     160     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6.1e-09
    PF13414.1 17 gdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleld 68
                 ++ d A ++y +A+  + ++ae+ ynl+l+ l+   ++ eAl+++ek +++ 
  MMETSP0890-20130614|33628_1  3 NQSDLAKQFYLEAIGVEADCAEAIYNLGLINLRTQ-NWNEALQAFEKLHQII 53
                 5668899**************************96.78*********99985 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 9.8e-12
    PF13414.1  3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekA 64
                 Aea ++lG   ++ +++ eA++a+ek  ++ pn+a++ ++ A++y+ +g +++ Al+ y+  
  MMETSP0890-20130614|33628_1 23 AEAIYNLGLINLRTQNWNEALQAFEKLHQIIPNSADVIFQVAYLYEARG-QFDLALKWYNIL 83
                 899**********************************************.6*****999865 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 1.5e-06
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnae..................................lyynlAlaylklgkdyeeAledyekAleldP 69 
                  A++ ++ ++ +  +g++d A++ y+  ++  p++a+                                  + + l+  y k   +ye+A++ +++A e+ P
  MMETSP0890-20130614|33628_1  57 ADVIFQVAYLYEARGQFDLALKWYNILVARLPSDASvlarvgqlcnriddeaqafhfhlesyrhypasldIISWLGVWYVKTE-MYEKAIHFFTRAAEIQP 156
                  77888889999999***************99999999999999999999999999999999999999999***********85.9**********999987 PP

  == domain 4    score: 29.1 bits;  conditional E-value: 8.4e-10
    PF13414.1   9 lGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  lG  + k   y++Ai ++++A e++p+  +  +    +y++ g dy++Al+ y+k ++l P
  MMETSP0890-20130614|33628_1 131 LGVWYVKTEMYEKAIHFFTRAAEIQPDEVKWQLMVTSCYRRTG-DYQKALALYKKIHALHP 190
                  6888999999*********************************.7***********99987 PP

  == domain 5    score: 17.8 bits;  conditional E-value: 2.7e-06
    PF13414.1  12 alfkegdydeAieayekAleldpnnaelyynlAlaylklg 51 
                  ++ + gdy++A+++y+k  +l p+nae++  l ++   lg
  MMETSP0890-20130614|33628_1 168 CYRRTGDYQKALALYKKIHALHPENAECLRYLIAICKDLG 207
                  68889**********************8866544444445 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         4   2.5e+03      16      28 ..       4      16 ..       1      16 [. 0.79
   2 !   25.0   0.0   1.6e-08   9.7e-06       1      33 [.      23      55 ..      23      56 .. 0.96
   3 !   12.4   0.0   0.00016     0.099       2      32 ..      58      88 ..      57      90 .. 0.84
   4 !   19.3   0.0     1e-06   0.00065       5      33 ..     129     157 ..     126     158 .. 0.94
   5 !   19.3   0.1     1e-06   0.00063      10      34 .]     168     192 ..     167     192 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 4
                 -HHHHHHHHHHHH CS
   PF07719.12 16 dyeeAleafekAl 28
                 + + A++++ +A+
  MMETSP0890-20130614|33628_1  4 QSDLAKQFYLEAI 16
                 56789999*9997 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                 aea ynlGl+ ++ ++++eAl+afek  ++ Pn
  MMETSP0890-20130614|33628_1 23 AEAIYNLGLINLRTQNWNEALQAFEKLHQIIPN 55
                 799***************************998 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12  2 ealynlGlayyklgdyeeAleafekAleldP 32
                 ++ ++ +++y+++g+++ Al++++  ++  P
  MMETSP0890-20130614|33628_1 58 DVIFQVAYLYEARGQFDLALKWYNILVARLP 88
                 677999*****************97776666 PP

  == domain 4    score: 19.3 bits;  conditional E-value: 1e-06
                  HHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                   +lG  y k   ye+A+++f +A e++P+
  MMETSP0890-20130614|33628_1 129 SWLGVWYVKTEMYEKAIHFFTRAAEIQPD 157
                  689*************************7 PP

  == domain 5    score: 19.3 bits;  conditional E-value: 1e-06
                  HHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12  10 ayyklgdyeeAleafekAleldPnn 34 
                  +y++ gdy++Al++++k  +l P+n
  MMETSP0890-20130614|33628_1 168 CYRRTGDYQKALALYKKIHALHPEN 192
                  8**********************97 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-05     0.022       1      43 [.      23      65 ..      23      66 .. 0.92
   2 !   23.1   0.2     1e-07   6.4e-05       3      44 .]      59     100 ..      57     100 .. 0.91
   3 ?    6.9   0.0     0.017        10       6      40 ..     130     164 ..     125     168 .. 0.86
   4 !   21.7   0.0   2.8e-07   0.00017       9      43 ..     167     201 ..     161     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-05
    PF13428.1  1 peallalarallalGdpdeAiallrralalaPddaealllLar 43
                 +ea + l+ + l+ +++ eA+++++++ +  P++a++ ++ a+
  MMETSP0890-20130614|33628_1 23 AEAIYNLGLINLRTQNWNEALQAFEKLHQIIPNSADVIFQVAY 65
                 58999*******************************9887775 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1e-07
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  +  + a +++a+G++d A+++++ ++a+ P+da +l + ++l
  MMETSP0890-20130614|33628_1  59 VIFQVAYLYEARGQFDLALKWYNILVARLPSDASVLARVGQL 100
                  567899****************************99998886 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.017
    PF13428.1   6 alarallalGdpdeAiallrralalaPddaealll 40 
                   l+  +   + +++Ai  + ra++ +Pd+   +l+
  MMETSP0890-20130614|33628_1 130 WLGVWYVKTEMYEKAIHFFTRAAEIQPDEVKWQLM 164
                  688899999*******************9877765 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 2.8e-07
    PF13428.1   9 rallalGdpdeAiallrralalaPddaealllLar 43 
                    +++ Gd+++A+al++++ al+P++ae l++L +
  MMETSP0890-20130614|33628_1 167 SCYRRTGDYQKALALYKKIHALHPENAECLRYLIA 201
                  4699************************9999975 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.68   4.2e+02      15      28 ..       3      16 ..       1      22 [. 0.83
   2 !   20.0   0.1   5.3e-07   0.00033       1      33 [.      23      55 ..      23      56 .. 0.95
   3 !    9.9   0.1   0.00083      0.51       4      25 ..      60      81 ..      57      82 .. 0.86
   4 !   16.2   0.0   8.2e-06    0.0051      11      33 ..     135     157 ..     129     158 .. 0.89
   5 !   18.2   0.1   1.9e-06    0.0012      10      34 .]     168     192 ..     167     192 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.68
                 T-HHHHHHHHHHHH CS
   PF00515.23 15 gkydeAleyyekAL 28
                 ++ d A ++y +A+
  MMETSP0890-20130614|33628_1  3 NQSDLAKQFYLEAI 16
                 67899********9 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 5.3e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23  1 akalynlGnaylklgkydeAleyyekALelnPn 33
                 a+a ynlG++ l+ ++++eAl+++ek  ++ Pn
  MMETSP0890-20130614|33628_1 23 AEAIYNLGLINLRTQNWNEALQAFEKLHQIIPN 55
                 7999**********************9999998 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00083
                 HHHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyye 25
                  ++ +++y   g++d Al+ y+
  MMETSP0890-20130614|33628_1 60 IFQVAYLYEARGQFDLALKWYN 81
                 566799**************96 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 8.2e-06
                  HHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23  11 ylklgkydeAleyyekALelnPn 33 
                  y k ++y++A+ ++ +A e++P+
  MMETSP0890-20130614|33628_1 135 YVKTEMYEKAIHFFTRAAEIQPD 157
                  88899*****************8 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 1.9e-06
                  HHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23  10 aylklgkydeAleyyekALelnPnn 34 
                  +y++ g+y++Al+ y+k   l P+n
  MMETSP0890-20130614|33628_1 168 CYRRTGDYQKALALYKKIHALHPEN 192
                  9**********************97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   7.7e-06    0.0048      42      75 ..      19      52 ..       1      55 [. 0.77
   2 !   29.9   0.7   5.4e-10   3.4e-07       3      70 ..      21      81 ..      19      89 .. 0.92
   3 !   16.6   0.2   7.7e-06    0.0048       4      76 ..      56     121 ..      53     123 .. 0.87
   4 !   25.1   0.0   1.8e-08   1.1e-05       9      75 ..     129     188 ..     122     191 .. 0.90
   5 !   16.7   0.4   7.5e-06    0.0047      14      60 ..     168     207 ..     164     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.7e-06
    PF13424.1 42 hpdtaralnnlanlylalgdydeAleylekAlei 75
                  +d+a a +nl+ + l+ ++  eAl+ +ek ++i
  MMETSP0890-20130614|33628_1 19 EADCAEAIYNLGLINLRTQNWNEALQAFEKLHQI 52
                 4799999999999999999999999999998876 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 5.4e-10
    PF13424.1  3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleyle 70
                 d+a + +nl+l+ +r +++ eAl+ +ek  +++       p+ a++ ++ a+ly+a+g++d Al++++
  MMETSP0890-20130614|33628_1 21 DCAEAIYNLGLINLRTQNWNEALQAFEKLHQII-------PNSADVIFQVAYLYEARGQFDLALKWYN 81
                 6788889*************************9.......77799*********************96 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 7.7e-06
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                   a++ ++ a ++++ g++d Al++y+  ++ l       p  a++l   ++l+++  d ++A  ++ ++++ +
  MMETSP0890-20130614|33628_1  56 SADVIFQVAYLYEARGQFDLALKWYNILVARL-------PSDASVLARVGQLCNRIDDEAQAFHFHLESYRHY 121
                  5788889999*******************997.......33499******************99999999876 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 1.8e-08
    PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  + l+  + + ++y++A+ ++ +a e++       pd ++  +    +y++ gdy++Al++++k +++
  MMETSP0890-20130614|33628_1 129 SWLGVWYVKTEMYEKAIHFFTRAAEIQ-------PDEVKWQLMVTSCYRRTGDYQKALALYKKIHAL 188
                  56899999******************7.......77799999*********************9887 PP

  == domain 5    score: 16.7 bits;  conditional E-value: 7.5e-06
    PF13424.1  14 vlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalg 60 
                  ++rr gdy++Al+ly+k  +l       hp+ a +l+ l  ++  lg
  MMETSP0890-20130614|33628_1 168 CYRRTGDYQKALALYKKIHAL-------HPENAECLRYLIAICKDLG 207
                  789999999999999888877.......5666666666655555555 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.6e-07   0.00035      14      64 ..       6      56 ..       2      57 .. 0.91
   2 !   13.6   0.8   0.00012     0.072       2      62 ..      62     122 ..      61     125 .. 0.82
   3 ?    4.0   0.0      0.12        76      25      63 ..     119     157 ..     111     159 .. 0.86
   4 !   21.9   0.0   2.9e-07   0.00018      13      65 .]     141     193 ..     135     193 .. 0.95
   5 !   15.9   0.2   2.2e-05     0.014       7      46 ..     169     208 ..     169     224 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.6e-07
    PF13432.1 14 deAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64
                 d A + + +a+  + ++aea ++l+ + lr  ++ eA+++++++ ++ P++
  MMETSP0890-20130614|33628_1  6 DLAKQFYLEAIGVEADCAEAIYNLGLINLRTQNWNEALQAFEKLHQIIPNS 56
                 7789999***********************************999888876 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00012
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaP 62 
                  + A ++ ++G++d Al+ ++ ++a+ P +a +l + ++++ r  + ++A  +  + ++ +P
  MMETSP0890-20130614|33628_1  62 QVAYLYEARGQFDLALKWYNILVARLPSDASVLARVGQLCNRIDDEAQAFHFHLESYRHYP 122
                  56899999999*******************9999999999988777777655555555555 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.12
    PF13432.1  25 alaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  + +P   ++  +l++ + +   +++A+ ++ +a+++ Pd
  MMETSP0890-20130614|33628_1 119 RHYPASLDIISWLGVWYVKTEMYEKAIHFFTRAAEIQPD 157
                  456999999999999999999999999999999999887 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 2.9e-07
    PF13432.1  13 ydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPddp 65 
                  y++A++ + +a + +P+ +  +l    ++ r g++++A+al++++ al P ++
  MMETSP0890-20130614|33628_1 141 YEKAIHFFTRAAEIQPDEVKWQLMVTSCYRRTGDYQKALALYKKIHALHPENA 193
                  99********************************************9999875 PP

  == domain 5    score: 15.9 bits;  conditional E-value: 2.2e-05
    PF13432.1   7 llraGdydeAlaaleaalalaPeaaeallllaeallrlgr 46 
                  + r Gdy++Ala+++++ al+Pe+ae l +l  ++ +lg+
  MMETSP0890-20130614|33628_1 169 YRRTGDYQKALALYKKIHALHPENAECLRYLIAICKDLGH 208
                  5689**************************9999888765 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-06    0.0025       1      28 [.      24      51 ..      24      56 .. 0.88
   2 !   12.3   0.0   0.00026      0.16       1      31 [.      58      88 ..      58      90 .. 0.90
   3 ?    5.7   0.0     0.033        21       5      32 ..     130     157 ..     127     158 .. 0.92
   4 !   14.1   0.0   7.1e-05     0.044       8      32 ..     167     191 ..     161     192 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  1 dAlyklalsyyklgdtdeAlealerlik 28
                 +A y+l+l+ ++++++ eAl+a+e+l +
  MMETSP0890-20130614|33628_1 24 EAIYNLGLINLRTQNWNEALQAFEKLHQ 51
                 799*********66***********976 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
    PF13174.1  1 dAlyklalsyyklgdtdeAlealerlikeyP 31
                 d+ ++ a++y++ g++d Al+ ++ l+++ P
  MMETSP0890-20130614|33628_1 58 DVIFQVAYLYEARGQFDLALKWYNILVARLP 88
                 56799*******88*************9977 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.033
                  HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1   5 klalsyyklgdtdeAlealerlikeyPd 32 
                  +l+  y k+ ++++A+  + r  +  Pd
  MMETSP0890-20130614|33628_1 130 WLGVWYVKTEMYEKAIHFFTRAAEIQPD 157
                  79******77***********9999997 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 7.1e-05
                  HHHHHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1   8 lsyyklgdtdeAlealerlikeyPd 32 
                   +y+++gd+++Al++++++ + +P+
  MMETSP0890-20130614|33628_1 167 SCYRRTGDYQKALALYKKIHALHPE 191
                  5999999*************99997 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.079        49      14      29 ..       2      17 ..       1      22 [. 0.86
   2 !   12.2   0.0   0.00018      0.11       2      26 ..      24      48 ..      23      55 .. 0.92
   3 !    8.1   0.0    0.0034       2.1       5      25 ..      61      81 ..      57      85 .. 0.87
   4 ?    5.6   0.0     0.022        14      11      33 ..     135     157 ..     131     158 .. 0.88
   5 !   12.2   0.0   0.00017      0.11      10      27 ..     168     185 ..     167     192 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.079
                 TT-HHHHHHHHH---H CS
    PF13181.1 14 lGdydkAkeylekale 29
                 +++ d+Ak+++ +a+ 
  MMETSP0890-20130614|33628_1  2 KNQSDLAKQFYLEAIG 17
                 6889**********85 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00018
                 --TTT---HHHHTT-HHHHHHHHH- CS
    PF13181.1  2 kayynlGdiYrqlGdydkAkeylek 26
                 +a ynlG+i + + ++ +A++++ek
  MMETSP0890-20130614|33628_1 24 EAIYNLGLINLRTQNWNEALQAFEK 48
                 788*********************9 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0034
                 TT---HHHHTT-HHHHHHHHH CS
    PF13181.1  5 ynlGdiYrqlGdydkAkeyle 25
                 ++ +++Y+  G++d+A++ ++
  MMETSP0890-20130614|33628_1 61 FQVAYLYEARGQFDLALKWYN 81
                 56689**************98 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.022
                  HHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1  11 YrqlGdydkAkeylekalelkpr 33 
                  Y ++  y+kA+ ++ +a e+ p+
  MMETSP0890-20130614|33628_1 135 YVKTEMYEKAIHFFTRAAEIQPD 157
                  667889**************996 PP

  == domain 5    score: 12.2 bits;  conditional E-value: 0.00017
                  HHHHTT-HHHHHHHHH-- CS
    PF13181.1  10 iYrqlGdydkAkeyleka 27 
                  +Yr +Gdy kA++ ++k+
  MMETSP0890-20130614|33628_1 168 CYRRTGDYQKALALYKKI 185
                  9***************97 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.014       8.7       1      24 [.      25      48 ..      25      53 .. 0.92
   2 ?    4.0   0.0     0.072        45       5      34 ..      63      90 ..      59      92 .. 0.78
   3 !   12.4   0.0   0.00015     0.094       5      33 ..     131     157 ..     131     160 .. 0.83
   4 !   16.5   0.0   7.5e-06    0.0047       7      24 ..     167     184 ..     164     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.014
    PF13176.1  1 allnLarlysrlgdyekAielyer 24
                 a++nL+ +  r +++ +A++++e+
  MMETSP0890-20130614|33628_1 25 AIYNLGLINLRTQNWNEALQAFEK 48
                 6789*******************8 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.072
    PF13176.1  5 LarlysrlgdyekAielyeraLaltkdpld 34
                  a ly+++g+++ A++ y     +++ p+d
  MMETSP0890-20130614|33628_1 63 VAYLYEARGQFDLALKWYNI--LVARLPSD 90
                 5889************9987..66655555 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00015
    PF13176.1   5 LarlysrlgdyekAielyeraLaltkdpl 33 
                  L++ y++   yekAi +++r  a +  p+
  MMETSP0890-20130614|33628_1 131 LGVWYVKTEMYEKAIHFFTR--AAEIQPD 157
                  899*****************..5555554 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 7.5e-06
    PF13176.1   7 rlysrlgdyekAielyer 24 
                  ++y+r gdy+kA+ ly++
  MMETSP0890-20130614|33628_1 167 SCYRRTGDYQKALALYKK 184
                  68***************9 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   0.00023      0.14       3      48 ..      37      80 ..       9      81 .. 0.70
   2 !   14.6   0.1   3.7e-05     0.023       3      67 ..      37      97 ..      35     111 .. 0.80
   3 !   26.4   1.2   8.3e-09   5.2e-06       3      71 ..     139     206 ..     137     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00023
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHH CS
    PF12895.2  3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyell 48
                 +n+++Al  +ekl++  p+  ++++++  A+ +   g+++ A++++
  MMETSP0890-20130614|33628_1 37 QNWNEALQAFEKLHQIIPN--SADVIFQVAYLYEARGQFDLALKWY 80
                 5677777777777777662..4555565677777777777777665 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3.7e-05
                 T-HHHHHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHHHHH CS
    PF12895.2  3 hnyknAlflaekllaespkdpedaylyalAlclylngeykrAyellrkleldssslgcryllArc 67
                 +n+++Al  +ekl++  p+  ++++++  A+ +   g+++ A++++  + l ++ +  + +lAr+
  MMETSP0890-20130614|33628_1 37 QNWNEALQAFEKLHQIIPN--SADVIFQVAYLYEARGQFDLALKWY--NILVARLPSDASVLARV 97
                 799*************983..57788888*****************..77777666777777765 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 8.3e-09
                  T-HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHHHHHHHHHHT CS
    PF12895.2   3 hnyknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk.leldssslgcryllArcllkl 71 
                  ++y++A+ ++ ++ + +p d+ +   +     c+ ++g+y++A+ l++k + l +++++c   l   + +l
  MMETSP0890-20130614|33628_1 139 EMYEKAIHFFTRAAEIQP-DEvKWQLM--VTSCYRRTGDYQKALALYKKiHALHPENAECLRYLIAICKDL 206
                  68***************9.43244444..59****************999999999999987775555555 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0019       1.2       2      34 .]      12      44 ..      11      44 .. 0.85
   2 !   11.8   0.0   0.00032       0.2      10      33 ..      54      77 ..      46      78 .. 0.92
   3 ?    0.3   0.0       1.6   9.8e+02       8      33 ..     120     145 ..     113     146 .. 0.73
   4 ?    3.6   0.0      0.13        82       2      33 ..     148     179 ..     147     180 .. 0.79
   5 ?    3.2   0.0      0.18   1.1e+02       2      27 ..     182     207 ..     181     219 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0019
    PF13431.1  2 yekaleldPnnadaynnLAelllnnGdleeAeq 34
                 y++a+  + + a+a +nL+++ l+ +++ eA+q
  MMETSP0890-20130614|33628_1 12 YLEAIGVEADCAEAIYNLGLINLRTQNWNEALQ 44
                 6777777777799******************87 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00032
    PF13431.1 10 PnnadaynnLAelllnnGdleeAe 33
                 Pn+ad+ ++ A+l+ ++G+++ A+
  MMETSP0890-20130614|33628_1 54 PNSADVIFQVAYLYEARGQFDLAL 77
                 9********************997 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 1.6
    PF13431.1   8 ldPnnadaynnLAelllnnGdleeAe 33 
                  ++P + d    L++ + +   +e+A+
  MMETSP0890-20130614|33628_1 120 HYPASLDIISWLGVWYVKTEMYEKAI 145
                  56667777778888888888888886 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.13
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                  + +a e++P+ +    +   ++ + Gd+++A+
  MMETSP0890-20130614|33628_1 148 FTRAAEIQPDEVKWQLMVTSCYRRTGDYQKAL 179
                  67888888887777777778999999999997 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.18
    PF13431.1   2 yekaleldPnnadaynnLAelllnnG 27 
                  y+k  +l+P+na+ +++L  + +++G
  MMETSP0890-20130614|33628_1 182 YKKIHALHPENAECLRYLIAICKDLG 207
                  6666689********99977666666 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.6e-05      0.01       5      63 ..      33      91 ..      20     102 .. 0.88
   2 !   11.7   0.0   0.00025      0.15       3      62 ..     133     192 ..     131     201 .. 0.88
   3 !    7.1   0.0     0.007       4.4       3      32 ..     167     196 ..     165     212 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
    PF13371.1  5 ylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdap 63
                  lr + + +AL++ e l ++ P+++  +   ++l++ +g++  A++ ++  +++ p++ 
  MMETSP0890-20130614|33628_1 33 NLRTQNWNEALQAFEKLHQIIPNSADVIFQVAYLYEARGQFDLALKWYNILVARLPSDA 91
                 5899*****************************************99988888888544 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00025
    PF13371.1   3 aiylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpda 62 
                   +y   e++e+A+    r ++++Pd +        ++ ++g+++ A++ +    +l p+ 
  MMETSP0890-20130614|33628_1 133 VWYVKTEMYEKAIHFFTRAAEIQPDEVKWQLMVTSCYRRTGDYQKALALYKKIHALHPEN 192
                  589999****************************************99998888888754 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.007
    PF13371.1   3 aiylreedferALavverllllaPddpyer 32 
                  + y r +d+++ALa +  + +l+P+ ++ +
  MMETSP0890-20130614|33628_1 167 SCYRRTGDYQKALALYKKIHALHPENAECL 196
                  5799********************988755 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.012       7.2       2      28 ..      23      49 ..      22      52 .. 0.88
   2 ?    2.5   0.1      0.21   1.3e+02       8      25 ..      63      80 ..      60      81 .. 0.90
   3 ?    0.8   0.0       0.7   4.3e+02       4      32 ..     127     155 ..     124     155 .. 0.86
   4 !   13.2   0.0   8.9e-05     0.056      11      31 ..     168     188 ..     165     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.012
    PF13374.1  2 aaalnnLAlalrargryeeAlaleeea 28
                 a a  nL+l+  ++ +++eAl+ +e+ 
  MMETSP0890-20130614|33628_1 23 AEAIYNLGLINLRTQNWNEALQAFEKL 49
                 77899****************999876 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.21
    PF13374.1  8 LAlalrargryeeAlale 25
                 +A ++ arg+++ Al+++
  MMETSP0890-20130614|33628_1 63 VAYLYEARGQFDLALKWY 80
                 688999********9987 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.7
    PF13374.1   4 alnnLAlalrargryeeAlaleeealair 32 
                    + L++ + ++  ye+A  ++ +a++i+
  MMETSP0890-20130614|33628_1 127 IISWLGVWYVKTEMYEKAIHFFTRAAEIQ 155
                  56789999999999********9999985 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 8.9e-05
    PF13374.1  11 alrargryeeAlaleeealai 31 
                   +r++g+y++Alal+ ++ a+
  MMETSP0890-20130614|33628_1 168 CYRRTGDYQKALALYKKIHAL 188
                  69*************999875 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.2   9.2e-09   5.7e-06      14     210 ..      29     224 ..      23     234 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 9.2e-09
    PF13429.1  14 lAnllyakgdfkkAlevLksaadkaapskdeeyWrtladLAwalqdddtaraAyrqLlasgkaraedyerliel.lydaepkdAarlaleayrryksprlLqsalelle.rakdykrieellasleekeaaeqsalfllar.aellrqegqkkkAlrllrralalkpassdlraallWlliDlgrr.aelrealaawkaea 210
                  l  + +++++ ++Al++  +++ ++  ++ ++   ++a L  a  ++d a++ y+ L+a   ++a+ + r+ +l  + ++  +A  + le+yr+y  +    s l +++ +++ y++   ++++    ++++ ++  ++++  + +r++g+ +kAl+l+++  al p++++    l+ +  Dlg + ae ++ la+++ +a
  MMETSP0890-20130614|33628_1  29 LGLINLRTQNWNEALQAF-EKLHQII-PNSADVIFQVAYLYEARGQFDLALKWYNILVARLPSDASVLARVGQLcNRIDDEAQAFHFHLESYRHYPASLDIISWLGVWYvKTEMYEKAIHFFTR---AAEIQPDEVKWQLMvTSCYRRTGDYQKALALYKKIHALHPENAECLRYLIAICKDLGHQhAEYQAKLARLEPNA 224
                  556667788889999999.5566665.5555666678999999999999999999999999999999999999977889999999999999999999999999998876367778888888887...56677788888776156799999999999999999999999999999999999999865155788888887766 PP

>> PF09295.5  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   1.1e+02     181     211 ..      35      65 ..      25      70 .. 0.86
   2 !   14.1   0.0   2.1e-05     0.013     183     289 ..      71     180 ..      62     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.17
    PF09295.5 181 ltkrydralellekLkeeepevvillarvll 211
                   t++ ++al+ +ekL++  p+ + ++ +v  
  MMETSP0890-20130614|33628_1  35 RTQNWNEALQAFEKLHQIIPNSADVIFQVAY 65 
                  5999*****************9999988865 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.1e-05
    PF09295.5 183 krydralellekLkeeepevvillarvllla...deEvdavkllndalkeeekdaelLslqaefllskkkeelalevakravksaPsefktWalLvkvYikledienALl 289
                   ++d al+  + L ++ p  +++larv  l+   d+E +a +   ++ ++ + + +++s    + ++ + +e a++  +ra ++ P e k   +++ +Y + +d+++AL 
  MMETSP0890-20130614|33628_1  71 GQFDLALKWYNILVARLPSDASVLARVGQLCnriDDEAQAFHFHLESYRHYPASLDIISWLGVWYVKTEMYEKAIHFFTRAAEIQPDEVKWQLMVTSCYRRTGDYQKALA 180
                  57788899999999999*********9776623368999999999999999999**********************************998888999***********95 PP

>> PF01535.15  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.2   1.4e+03      15      26 ..      38      49 ..      34      51 .. 0.83
   2 ?    0.3   0.0       1.3   7.8e+02      13      25 ..      70      82 ..      66      86 .. 0.80
   3 ?    1.2   0.0      0.62   3.9e+02      10      23 ..     135     148 ..     134     151 .. 0.89
   4 !    9.2   0.0    0.0019       1.2       8      26 ..     167     185 ..     164     188 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.2
   PF01535.15 15 kleeAlelfkeM 26
                 ++ eAl+ f+++
  MMETSP0890-20130614|33628_1 38 NWNEALQAFEKL 49
                 799******986 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.3
   PF01535.15 13 aGkleeAlelfke 25
                  G+++ Al++++ 
  MMETSP0890-20130614|33628_1 70 RGQFDLALKWYNI 82
                 7999*****9985 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.62
   PF01535.15  10 yckaGkleeAlelf 23 
                  y+k  ++e+A+ +f
  MMETSP0890-20130614|33628_1 135 YVKTEMYEKAIHFF 148
                  99********9888 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0019
   PF01535.15   8 sgyckaGkleeAlelfkeM 26 
                  s+y + G++++Al l+k++
  MMETSP0890-20130614|33628_1 167 SCYRRTGDYQKALALYKKI 185
                  79**************986 PP

>> PF12569.3  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.2   1.2e+02      18      69 ..      37      88 ..      23     125 .. 0.65
   2 !   12.1   0.1   8.4e-05     0.052     198     257 ..     128     187 ..     108     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.2
    PF12569.3 18 gkleeALehLeekekkivDklavlelkaelllkLgrkeeAekvyraLlernp 69
                  + +eAL+  e+ ++ i +   v  + a l+ + g+ + A k y+ L+ r p
  MMETSP0890-20130614|33628_1 37 QNWNEALQAFEKLHQIIPNSADVIFQVAYLYEARGQFDLALKWYNILVARLP 88
                 4456666666666666666666666666666666666666666666666665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.4e-05
    PF12569.3 198 lyflAqhydklgsrekaleyidkaiehtptlvelymtkarilkhaGdlekAaelmeeark 257
                  + +l  +y k++ +eka+++  +a e +p  v  +++  + +++ Gd++kA +l ++  +
  MMETSP0890-20130614|33628_1 128 ISWLGVWYVKTEMYEKAIHFFTRAAEIQPDEVKWQLMVTSCYRRTGDYQKALALYKKIHA 187
                  567889999******************************************998877655 PP

>> PF09986.4  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.14        88     162     193 ..      20      51 ..       5      62 .. 0.82
   2 !    9.9   0.1   0.00066      0.41      94     194 ..      67     188 ..      56     206 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.14
    PF09986.4 162 ideatvlYLiaeLerrlgnkeealkwlskvig 193
                   d a+ +Y ++  + r+ n +eal++++k+ +
  MMETSP0890-20130614|33628_1  20 ADCAEAIYNLGLINLRTQNWNEALQAFEKLHQ 51 
                  4567789********************99865 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00066
    PF09986.4  94 deaiesYkLallcyelkkekkskkAklalrlAWlyrdled...........................eekeklflkkAlelykeayekekfpiegideatvlYLiaeLerrlgnkeealkwlskvigs 194
                   ea  ++ Lal  y++  ++  + A ++ r++ l +  +d                            ++++++++kA++++++a e + +      e +  +++    rr+g++++al  ++k+   
  MMETSP0890-20130614|33628_1  67 YEARGQFDLALKWYNILVARLPSDASVLARVGQLCNRIDDeaqafhfhlesyrhypasldiiswlgvWYVKTEMYEKAIHFFTRAAEIQPD------EVKWQLMVTSCYRRTGDYQKALALYKKIHAL 188
                  5777889999999999999999999999999999999999899999999999999999999999988899999999999999999988877......6777888889999*********999999765 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.095        59       7      29 ..       7      27 ..       4      31 .. 0.73
   2 ?    3.0   0.0      0.26   1.6e+02       1      11 [.      23      31 ..      23      48 .. 0.71
   3 ?    4.6   0.1     0.076        47       5      32 ..      61      81 ..      57      82 .. 0.77
   4 ?    6.8   0.0     0.016        10      21      36 ..     137     153 ..     130     154 .. 0.81
   5 ?    2.7   0.1       0.3   1.9e+02      23      33 ..     174     184 ..     167     184 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.095
    PF08238.7  7 LGlyymylnGlgGvpkdpekAle 29
                 L++ ++yl+ + Gv++d ++A++
  MMETSP0890-20130614|33628_1  7 LAK-QFYLEAI-GVEADCAEAIY 27
                 663.4458998.89999999987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.26
    PF08238.7  1 aeAqynLGlyy 11
                 aeA ynLG  +
  MMETSP0890-20130614|33628_1 23 AEAIYNLG--L 31
                 79******..5 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.076
    PF08238.7  5 ynLGlyymylnGlgGvpkdpekAleWye 32
                 ++ +  y+y+ ++       ++Al+Wy 
  MMETSP0890-20130614|33628_1 61 FQVA--YLYEARG-----QFDLALKWYN 81
                 7888..8888883.....5779****95 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.016
    PF08238.7  21 pk.dpekAleWyekAAe 36 
                  +   +ekA++ +++AAe
  MMETSP0890-20130614|33628_1 137 KTeMYEKAIHFFTRAAE 153
                  443599**********8 PP

  == domain 5    score: 2.7 bits;  conditional E-value: 0.3
    PF08238.7  23 dpekAleWyek 33 
                  d++kAl +y+k
  MMETSP0890-20130614|33628_1 174 DYQKALALYKK 184
                  899******97 PP

>> PF13525.1  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.003       1.8       5      39 ..      23      57 ..      19      84 .. 0.88
   2 ?    5.8   0.1     0.012       7.6      43      77 ..     160     194 ..     132     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.003
    PF13525.1  5 ekelYeeaqealqkgdyaeAikkLealdsryPfgp 39
                 ++++Y+ +  +l+ ++++eA +++e+l++  P+++
  MMETSP0890-20130614|33628_1 23 AEAIYNLGLINLRTQNWNEALQAFEKLHQIIPNSA 57
                 678999***********************999885 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.012
    PF13525.1  43 qaqldliyAyykskdyeaaiataerFirlyPrhpn 77 
                  + ql++   y  + dy++a+a +++  +l+P++ +
  MMETSP0890-20130614|33628_1 160 KWQLMVTSCYRRTGDYQKALALYKKIHALHPENAE 194
                  55788888888899*****************8654 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.7   1.7e+03      24      34 ..       8      18 ..       2      53 .. 0.52
   2 ?    0.9   0.0      0.62   3.8e+02      12      28 ..      64      80 ..      55      82 .. 0.82
   3 ?    3.7   0.0     0.081        51      26      49 ..     139     162 ..     138     168 .. 0.80
   4 ?    4.9   0.1     0.033        21      18      30 ..     172     184 ..     170     185 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 2.7
                 HHHHHHHHHHH CS
   PF04212.13 24 AlelYkeAlel 34
                 A + Y eA+++
  MMETSP0890-20130614|33628_1  8 AKQFYLEAIGV 18
                 55555555554 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.62
                 HHHHHHTT-HHHHHHHH CS
   PF04212.13 12 AveaDeagkyeeAlelY 28
                 A   +  g+++ Al++Y
  MMETSP0890-20130614|33628_1 64 AYLYEARGQFDLALKWY 80
                 5557899********** PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.081
                  HHHHHHHHHHHHHHHHCTTHHCHH CS
   PF04212.13  26 elYkeAlelLlqalkyepnperre 49 
                  e Y++A++ + +a   +p++ + +
  MMETSP0890-20130614|33628_1 139 EMYEKAIHFFTRAAEIQPDEVKWQ 162
                  689999999999999998887655 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.033
                  TT-HHHHHHHHHH CS
   PF04212.13  18 agkyeeAlelYke 30 
                   g+y++Al lYk+
  MMETSP0890-20130614|33628_1 172 TGDYQKALALYKK 184
                  79*********97 PP

>> PF07720.7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.6   1.6e+03       6      22 ..      62      78 ..      58      83 .. 0.58
   2 ?    4.4   0.0     0.046        29      17      34 ..     141     156 ..     137     157 .. 0.78
   3 ?    4.3   0.1     0.053        33      15      27 ..     173     183 ..     171     188 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 2.6
                 HHHHHHHHTT-HHHHHH CS
    PF07720.7  6 slAaefynkkkyqeAre 22
                  +A+ + + ++++ A++
  MMETSP0890-20130614|33628_1 62 QVAYLYEARGQFDLALK 78
                 55555555555555554 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.046
                  HHHHHHH..HHHHHHH-T CS
    PF07720.7  17 yqeArelfsYallaildk 34 
                  y++A+++  +  +a +++
  MMETSP0890-20130614|33628_1 141 YEKAIHF--FTRAAEIQP 156
                  9******..557777775 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.053
                  T-HHHHHHH..HH CS
    PF07720.7  15 kkyqeArelfsYa 27 
                  ++yq+A+ l  Y+
  MMETSP0890-20130614|33628_1 173 GDYQKALAL--YK 183
                  9********..75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       407  (0.0297689); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        23  (0.00168227); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.72
# Mc/sec: 951.89
//
Query:       MMETSP0890-20130614|33644_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 483.08
//
Query:       MMETSP0890-20130614|33645_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-08   32.5   3.4        0.7   10.0   0.0    5.1  5  PF13516.1  Leucine Rich repeat
    2.9e-05   23.4   0.7         14    6.0   0.0    4.5  4  PF00560.28 Leucine Rich Repeat
     0.0018   17.7   0.1        2.8    7.5   0.0    3.4  3  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.013   15.4   2.5         51    4.6   0.0    4.6  5  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0031        11       3      24 .]       5      26 ..       4      26 .. 0.88
   2 !   10.0   0.0    0.0002       0.7       3      19 ..      33      49 ..      31      60 .. 0.82
   3 !    5.8   0.0    0.0046        16       3      20 ..      64      81 ..      62      88 .. 0.82
   4 !    6.0   0.0     0.004        14       1      23 [.      90     116 ..      90     117 .. 0.78
   5 ?    1.0   0.0      0.16   5.5e+02       6      18 ..     123     135 ..     118     136 .] 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0031
    PF13516.1  3 nLtsLdLsnNqigdeGlsaLan 24
                 +++ L+L +N +g eG  aLan
  MMETSP0890-20130614|33645_1  5 QIRQLNLRRNYLGWEGGVALAN 26
                 6899*********999999986 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0002
    PF13516.1  3 nLtsLdLsnNqigdeGl 19
                 +L  LdLs+N++g  G 
  MMETSP0890-20130614|33645_1 33 TLIFLDLSFNDLGAGGP 49
                 6889*********9886 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0046
    PF13516.1  3 nLtsLdLsnNqigdeGls 20
                 +L++L L+++ +g e  +
  MMETSP0890-20130614|33645_1 64 CLRHLSLGSCLVGPEAGM 81
                 69*********9988655 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.004
    PF13516.1   1 lknLtsLdLsnNq....igdeGlsaLa 23 
                  +++L +Ld+ +N+    +g  +l+ La
  MMETSP0890-20130614|33645_1  90 NNTLITLDVTDNHfdidVGTAFLKFLA 116
                  689**********66555777777776 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.16
    PF13516.1   6 sLdLsnNqigdeG 18 
                  +L+Ls+  +gd+ 
  MMETSP0890-20130614|33645_1 123 DLRLSSVEVGDDI 135
                  6899*99999997 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.011        39       2      13 ..       6      17 ..       5      30 .. 0.82
   2 !    6.0   0.0    0.0041        14       2      13 ..      34      45 ..      33      57 .. 0.86
   3 ?    3.6   0.0     0.025        87       2      12 ..      65      75 ..      64      90 .. 0.78
   4 ?    4.4   0.0     0.013        46       2      17 ..      93     109 ..      92     127 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.011
                 ESEEEETSSBCB CS
   PF00560.28  2 LeeLdLsgNnlt 13
                 ++ L+L++N l 
  MMETSP0890-20130614|33645_1  6 IRQLNLRRNYLG 17
                 789******986 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0041
                 ESEEEETSSBCB CS
   PF00560.28  2 LeeLdLsgNnlt 13
                 L  LdLs+N l 
  MMETSP0890-20130614|33645_1 34 LIFLDLSFNDLG 45
                 899******985 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.025
                 ESEEEETSSBC CS
   PF00560.28  2 LeeLdLsgNnl 12
                 L++L+L ++ +
  MMETSP0890-20130614|33645_1 65 LRHLSLGSCLV 75
                 9******9966 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.013
                  ESEEEETSSBCB.CHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpp 17 
                  L +Ld+ +N++  ++  
  MMETSP0890-20130614|33645_1  93 LITLDVTDNHFDiDVGT 109
                  899******99866554 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.039   1.3e+02      27      36 ..       7      16 ..       5      26 .. 0.79
   2 !    7.5   0.0   0.00083       2.8       3      34 ..      34      73 ..      32      76 .. 0.78
   3 !    6.5   0.1    0.0017       5.9       3      37 ..      65     104 ..      63     117 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.039
    PF12799.2 27 ktLnLsnNpi 36
                 ++LnL +N +
  MMETSP0890-20130614|33645_1  7 RQLNLRRNYL 16
                 7788888865 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00083
    PF12799.2  3 LevLdLsnN......nIk..dlppelanLpnLktLnLsnN 34
                 L +LdLs N      +I   ++++ +a+   L++L+L ++
  MMETSP0890-20130614|33645_1 34 LIFLDLSFNdlgaggPIAgiSIGHAIARNACLRHLSLGSC 73
                 889******6666666663457777999*********987 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0017
    PF12799.2   3 LevLdLsnNnIk.d....lppelanLpnLktLnLsnNpis 37 
                  L++L+L ++ +  +    + ++l + + L tL+++ N+++
  MMETSP0890-20130614|33645_1  65 LRHLSLGSCLVGpEagmiIAESLEKNNTLITLDVTDNHFD 104
                  7888888887764345657778999************985 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.056   1.9e+02       4      13 ..       7      16 ..       4      24 .. 0.88
   2 ?    4.6   0.0     0.015        51       3      14 ..      34      45 ..      33      49 .. 0.86
   3 ?    2.8   0.0     0.058     2e+02       2      11 ..      64      73 ..      63      78 .. 0.91
   4 ?    0.7   0.0      0.29   9.8e+02       3      13 ..      93     103 ..      91     109 .. 0.83
   5 ?   -1.7   0.0       1.8   6.3e+03      12      12 ..     119     119 ..     110     128 .. 0.56

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.056
    PF13504.1  4 keLdLsgnrL 13
                 ++L+L++n+L
  MMETSP0890-20130614|33645_1  7 RQLNLRRNYL 16
                 89******98 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.015
    PF13504.1  3 LkeLdLsgnrLt 14
                 L +LdLs n+L 
  MMETSP0890-20130614|33645_1 34 LIFLDLSFNDLG 45
                 779******985 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.058
    PF13504.1  2 nLkeLdLsgn 11
                 +L+ L+L ++
  MMETSP0890-20130614|33645_1 64 CLRHLSLGSC 73
                 69*****999 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.29
    PF13504.1   3 LkeLdLsgnrL 13 
                  L +Ld+ +n++
  MMETSP0890-20130614|33645_1  93 LITLDVTDNHF 103
                  779***99986 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 1.8
    PF13504.1  12 r 12 
                  +
  MMETSP0890-20130614|33645_1 119 S 119
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      156  (0.0114102); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.35s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 517.31
//
Query:       MMETSP0890-20130614|33650_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.35s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 969.27
//
Query:       MMETSP0890-20130614|33662_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-13   49.1   8.4    4.9e-13   48.8   5.8    1.1  1  PF03151.11 Triose-phosphate Transporter family
    0.00066   18.5   1.5    0.00093   18.0   1.0    1.2  1  PF06027.7  Eukaryotic protein of unknown function (DUF914)
  ------ inclusion threshold ------
       0.13   12.1  10.5       0.21   11.5   7.3    1.3  1  PF00892.15 EamA-like transporter family
        1.1    9.3  10.3       0.27   11.3   4.5    1.7  2  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   5.8   1.4e-16   4.9e-13       1     152 [.      11     154 ..      11     155 .. 0.93

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1.4e-16
   PF03151.11   1 GfilalaasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  G++l++ + ++ ++r+ ltqll + +        p  l++ + p+a+++l +++ ++e p + +++++ ++  l    r+ +  ++ + l  +l  ++++l+  +Ssl+l ++ ++k+ l +++s++ ++++it+l + G+l++++G+++Y 
  MMETSP0890-20130614|33662_1  11 GVLLTISSGFAAGMRWGLTQLLTQVR-----GAKPQLLVATTLPIAAFTLSLFAAIIELPIMLRRGEADFTRLL---DRVAIYAIGLASLGLCLLYTEVCLVATTSSLSLAILATAKETLLVAISIFGLHETITGLSASGFLVTIIGILAYQ 154
                  899********************995.....777778889999***********************99999554...48999999999999999*********************************************************6 PP

>> PF06027.7  Eukaryotic protein of unknown function (DUF914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.0   2.7e-07   0.00093     231     309 ..      80     158 ..      44     182 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.7e-07
    PF06027.7 231 aeivllfvg.falsmfllYslvpillkktsatmfnlslLtaDlyslligiflfkekvswLYllafvviiiGliiYsvket 309
                   +++++ +g  +l++ llY+ v ++  +ts++++ +   + +   + i if  +e++++L    f+v+iiG++ Y+ +++
  MMETSP0890-20130614|33662_1  80 DRVAIYAIGlASLGLCLLYTEVCLV-ATTSSLSLAILATAKETLLVAISIFGLHETITGLSASGFLVTIIGILAYQFHKH 158
                  344444444146899999*999876.567777766655566677778899999**********************98665 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.3     6e-05      0.21      20     122 ..      50     151 ..      24     154 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6e-05
   PF00892.15  20 ltitayrlliagillilllfllrep...ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                  + +++  +l+a+  +i l+++lr++   + ++  + +++ + l+ lg +l y       + +s s a l t+ e  + + +s++ l+e++t  +  g+++ ++G+l
  MMETSP0890-20130614|33662_1  50 I-AAFTLSLFAA--IIELPIMLRRGeadFTRLLDRVAIYAIGLASLGLCLLYTEVCLVATTSSLSLAILATAKE-TLLVAISIFGLHETITGLSASGFLVTIIGIL 151
                  2.2233334444..555555555555334444444444444444444444444444444445555555555555.55556688*********************97 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.48   1.7e+03      50      71 ..      12      33 ..       8      58 .. 0.56
   2 ?   11.3   4.5     8e-05      0.27       4     107 ..      55     156 ..      51     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.48
    PF13536.1 50 alltlAakhapglvaaitaltp 71
                 +llt++  +a g  +++t+l +
  MMETSP0890-20130614|33662_1 12 VLLTISSGFAAGMRWGLTQLLT 33
                 4555555555555555555433 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8e-05
    PF13536.1   4 rylfmllflllivllrkrlkellrelkrnpllwlllagllgfglfyalltlAakhap.glvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqve 107
                    lf++++ l i l r++  ++ r+l r  +  ++la+l g  l y+ ++l a  ++ +l +++ta  +ll+a +s + ++e++++ +    l+ +iG++  q +
  MMETSP0890-20130614|33662_1  55 LSLFAAIIELPIMLRRGEA-DFTRLLDRVAIYAIGLASL-GLCLLYTEVCLVATTSSlSLAILATAKETLLVA-ISIFGLHETITGLSASGFLVTIIGILAYQFH 156
                  4678888888876666665.********99999999665.566888888877777772455566666777555.89999********************988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       506  (0.0370099); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 1132.82
//
Query:       MMETSP0890-20130614|33667_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.46s 00:00:00.78 Elapsed: 00:00:00.76
# Mc/sec: 488.73
//
Query:       MMETSP0890-20130614|33665_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-35  121.2   0.0    3.9e-35  120.8   0.0    1.1  1  PF03643.10 Vacuolar protein sorting-associated protein 26
    7.9e-10   38.6   0.0    2.1e-09   37.2   0.0    1.7  2  PF00339.24 Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> PF03643.10  Vacuolar protein sorting-associated protein 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   5.8e-39   3.9e-35      32     274 ..      11     290 ..       5     291 .. 0.88

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 5.8e-39
   PF03643.10  32 lkvyedgeslsGvvtirlkdskkvehqGikveliGqiellydkg....................nsvdfislvkdlakpGelqesks...fpfefkklekr..yesYkGknvklrYvlrvtvvRkl..kditkekdlivh............efttaPevnksvklevGiedc..lhiefeyskskyhLkdvivGkiyfllvr..ikiksmelslikrestGl.aenvakdsetiakyeimDGasvrgesiPirlflsgydltPtlrdvnkkfsvkyylnlvlvded 274
                    +y+ ge+++G v+++ +     +h+Gi + +iG+  + ++ +                    ++ +++++++++++pG ++++ s   f+fe k ++     esY+G++v++ Y+++++ +R +    + ke ++iv             +f++ Pe+ ++++    i     + i     ++   +++  +G+  f++ +  + ++s+el+l++ e++   + +  +++++i+ ++i+DG+  +++ +Pi++++++++++Pt+   ++ f+++++lnl+++  d
  MMETSP0890-20130614|33665_1  11 DRIYRPGETVTGSVVVSARG--GWQHKGILMRIIGSAKTSMSGSkassglfdsvsssgsssqggKTRELMRESIEVTPPGRFSDGVSelaFSFELKPIDGCelRESYHGVYVNVCYLIHCECKRGVmkAPLEKELEFIVEvpsdsppavdprDFCISPESLENIRAAS-ISSIprFVIAGKLHRQSCPINSPFTGE--FIIQQseAIVRSVELQLVRSETIRDaSGSSQREATEIQVLQIADGDVSHNLVVPIYMIFPRLFTCPTMI--TEDFRIEFELNLIVLFAD 290
                  579****************9..789**********99988877788999*********************************9987664577777777765679********************998778***********************************865.66652256777778888899999****..555544499*************9883556789************************************8..667**********98665 PP

>> PF00339.24  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0     3e-13   2.1e-09       2     142 ..       4     147 ..       3     155 .. 0.79
   2 ?   -2.2   0.0      0.42   2.9e+03      17      40 ..     199     221 ..     194     245 .. 0.69

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 3e-13
                  EEEE---EEEE-SS--B---EE-TTTS..TTSEEEEEEEEEEEE---STT-----EEE..EEEST-SST.-S---HHHHHHHHH........----EE---B---....TTS----EE-----EEEEEEEES....S---TTTEEEEE CS
   PF00339.24   2 eieldkrdevyhpgepvsGkVlletkkpikvrkvklqlkGrartgweesevkglkfrk..qvlekvnysakeeylktqesllkkkdgenelpaGehefpFsfeLP....knlPsSfegqpGgirYevkaeldrp.wekdkkkkkvftv 142
                  ei+l + d++y pge+v+G V+++ +   + + + +++ G+a+t+ + s+ +   f +  ++ ++++  +++e+++++ ++        +++ G  e  FsfeL      +l  S+ g + ++ Y +++e++r   + + +k+ +f v
  MMETSP0890-20130614|33665_1   4 EIRLKRIDRIYRPGETVTGSVVVSARGGWQHKGILMRIIGSAKTSMSGSKASSGLFDSvsSSGSSSQGGKTRELMRESIEVTP----PGRFSDGVSELAFSFELKpidgCELRESYHGVYVNVCYLIHCECKRGvMKAPLEKELEFIV 147
                  899********************************************999999998874322222233333455555555554....59***************75655677999999999**********77634555566666655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.42
                  -B---EE-TTTS..TTSEEEEEEE CS
   PF00339.24  17 pvsGkVlletkkpikvrkvklqlk 40 
                  p +G+ ++++++   vr+v+lql 
  MMETSP0890-20130614|33665_1 199 PFTGEFIIQQSE-AIVRSVELQLV 221
                  567777776665.67888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.50s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 990.93
//
Query:       MMETSP0890-20130614|33679_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1204  (0.0880632); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        70  (0.00511995); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.47s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 263.26
//
Query:       MMETSP0890-20130614|33685_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   12.7   0.0        0.1   12.3   0.0    1.1  1  PF14408.1 Ribosomally synthesized peptide in actinomycetes


Domain annotation for each model (and alignments):
>> PF14408.1  Ribosomally synthesized peptide in actinomycetes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.7e-06       0.1      29      48 ..      29      48 ..      24      51 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.7e-06
    PF14408.1 29 KhgTsttsetstttspDgqn 48
                 K+++st+  tst+t+ Dg +
  MMETSP0890-20130614|33685_1 29 KRSSSTSARTSTSTNFDGRK 48
                 779***********99*987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.53
# Mc/sec: 257.72
//
Query:       MMETSP0890-20130614|33673_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-24   86.8   0.5    2.5e-14   52.9   0.0    2.6  3  PF14308.1  X-domain of DnaJ-containing
      6e-24   83.4   1.0    1.8e-23   81.9   0.7    1.9  1  PF00226.26 DnaJ domain
    0.00015   21.7   0.3    0.00039   20.4   0.2    1.7  1  PF09333.6  ATG C terminal domain


Domain annotation for each model (and alignments):
>> PF14308.1  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.4   6.3e+03      99     115 ..     290     307 ..     280     312 .. 0.53
   2 !   31.4   0.0     2e-11   9.1e-08       2     117 ..     322     443 ..     321     471 .. 0.79
   3 !   52.9   0.0   5.5e-18   2.5e-14     121     189 ..     582     651 ..     534     666 .. 0.80

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.4
    PF14308.1  99 ldaqksmee.mekeeeee 115
                  l+++++m++ m++e+e+e
  MMETSP0890-20130614|33673_1 290 LRLATTMKKsMQRESESE 307
                  444445544455555444 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 2e-11
    PF14308.1   2 eqkkreeeLaekLrdr.lseyvdgnk..deFkeklekeieeLkeesFglellhtIGkvYenkAnaflgksk...tflglsgifasvkekgksvkstfsalssaldaqksmeemekeeeeege 117
                  eq+ re++La++L d  l+  v+++   +e   +l+ ++++L   +Fg  ll  I+  Y   ++++l++       l ++++++   ++ ++++++++a+ss  +aq++ +++++ + +++ 
  MMETSP0890-20130614|33673_1 322 EQRVREVRLAQTLADElLKDLVEERIpkEECVVSLRRKADDLATTPFGATLLMVIARAYRVAGSRHLATGTaadVGLFFQETAHDASTRLHVLRDAVRAVSSTRAAQRADDDLARYQANGTT 443
                  699**********98725788874436599*************************************8776322234467788888888899999999999999999999999887766643 PP

  == domain 3    score: 52.9 bits;  conditional E-value: 5.5e-18
    PF14308.1 121 eelae.meekvtgkilaaawaiskfdiestlrkvCdkvLkDksvdkktRikRAeaLkilGkifqkvkrsk 189
                  e++ + ++ +++  +++aaw+is++di stl+ v +k+L+D+svd+  R+kRA+aL +l++ f ++  ++
  MMETSP0890-20130614|33673_1 582 ESMSKlNHARMMAAVVEAAWRISVVDIDSTLKVVTHKLLHDHSVDEIIRRKRAQALIVLADTFDAAVVAN 651
                  33333034456678*************************************************9876554 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.7   3.9e-27   1.8e-23       2      64 .]     192     253 ..     191     253 .. 0.98

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 3.9e-27
                  HHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26   2 yYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                  +Y++L+v+ da+d++I+kaY++ +lk HPDkn++d+ +a ekf++i+ Ay++Ls++ +r++yd
  MMETSP0890-20130614|33673_1 192 LYDVLNVDIDATDAQIRKAYYRCSLKNHPDKNPGDP-NAREKFQQISRAYQILSNKSSRRRYD 253
                  7***********************************.9************************8 PP

>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   8.5e-08   0.00039       8      84 ..      29     105 ..      23     118 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 8.5e-08
    PF09333.6   8 nqPadlreGlakAysslreglkdtaqtllavasevheqkglqgavgavlkaiPiavvrPligateavsktlgGvrnq 84 
                  + P+ +  G ++A+ +++ g+     tlla++  + +++g+ g+++++   +  av  P+ig + a +++ +G+ n 
  MMETSP0890-20130614|33673_1  29 EEPRHMGAGATQALAQISAGVLGGVGTLLAAPVIGAREEGVLGFAKGLGAGVAGAVALPMIGFACAAKSLAQGAANT 105
                  689***********************************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       564  (0.0412522); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.92
# Mc/sec: 1802.48
//
Query:       MMETSP0890-20130614|33681_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   15.4   0.0      0.018   15.2   0.0    1.2  1  PF12796.2 Ankyrin repeats (3 copies)
      0.096   12.8   0.0       0.11   12.7   0.0    1.2  1  PF13857.1 Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   2.6e-06     0.018       6      37 ..      20      49 ..       6      51 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.6e-06
    PF12796.2  6 engnlelvklLlekgadvdlgetpLhlAaeag 37
                 e g+l+++k+L+e+g+ ++     ++lAa +g
  MMETSP0890-20130614|33681_1 20 EFGHLDCLKYLHEHGCPWT--GHTCSLAAMSG 49
                 5689999999999999999..77777777766 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05      0.11      26      47 ..      21      42 ..       6      47 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
    PF13857.1 26 ggalevvrlLlapgadlnlrds 47
                  g+l+++++L+++g+ ++ ++ 
  MMETSP0890-20130614|33681_1 21 FGHLDCLKYLHEHGCPWTGHTC 42
                 79**************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 226.80
//
Query:       MMETSP0890-20130614|33687_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 593.00
//
Query:       MMETSP0890-20130614|33682_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-07   30.8   0.0    1.5e-05   24.8   0.0    3.1  3  PF00903.20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
    9.7e-07   29.2   0.0    4.5e-06   27.1   0.0    2.0  2  PF12681.2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> PF00903.20  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.37   2.5e+03      76      95 ..      13      32 ..       7      41 .. 0.80
   2 ?   -2.4   0.0      0.57   3.9e+03      13      32 ..      89     108 ..      78     136 .. 0.69
   3 !   24.8   0.0   2.2e-09   1.5e-05       5     104 ..     148     257 ..     146     274 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.37
                 EEEEEECEHHHHHHHHHHHH CS
   PF00903.20 76 hvafialdvedvgkaldrlk 95
                  v +++ +ved  + + r k
  MMETSP0890-20130614|33682_1 13 KVSLRVPSVEDAKEIVTRYK 32
                 57889999999888877766 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.57
                  HHHHHHHHHHH--EEEEEEE CS
   PF00903.20  13 eksldFYtkvLGfklvkktd 32 
                   ++l+F +k L + lv ++d
  MMETSP0890-20130614|33682_1  89 GENLEFQQKKLCASLVPDED 108
                  56777777777777776666 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 2.2e-09
                  EEEEES-HHHHHHHHHHHH--EEEEEEEESCSCCEEEEEEEETSSCEEEEEEEECCTTSCTCHHH...................EECSEEEEEEEECEHHHHHHHHHHHHH-SGEEEEE CS
   PF00903.20   5 valavgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkk...................ieetvhhvafialdvedvgkaldrlkeagvkvvae 104
                  ++l+v+dl++s+dFYt++ G++l++k    +et+ + +    ++++  elv+ +   ++++  +                    i         + ++  d ++    ++e g+  +++
  MMETSP0890-20130614|33682_1 148 IVLCVSDLDASIDFYTNAIGMRLLRKRSLLPETPAMVAFLAFSPQDADELVHSPEGADGLATPRIelrylygnenispdtglgeI---------VINNCPDTAAHAATIDEWGGHATEI 257
                  7899************************888887777777777777777777766666665553345666554444433332221.........2333444444444444444333333 PP

>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.38   2.6e+03      24      64 ..      42      82 ..      16     115 .. 0.53
   2 !   27.1   0.0   6.6e-10   4.5e-06       1     107 [.     150     274 ..     150     274 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.38
    PF12681.2 24 eegdfvtlslglalgsgvrellgldepeapggggvhlafev 64
                 e+++ + l   + ++ ++ +  + ++ +a+++g   + ++v
  MMETSP0890-20130614|33682_1 42 ESTSAMDLVFDSEFAIELSWSENIKPYDAEKTGLLEIGIQV 82
                 22232222222222222222222223444555555555555 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 6.6e-10
    PF12681.2   1 lpvsdleaaraFYeklLGfevae......eegdfvtlslglalgsgvrellgld...................epeapggggvhlafev.edldalvarlkaaGakvlgepedepwggrefyvrDPdGnliel 107
                  l vsdl+a+++FY+++ G+++        e + +v + l ++  ++++el++ +                   e+ +p +g   + +   +d  a +a + + G+   +e+e+   g++   ++DPdG+l++l
  MMETSP0890-20130614|33682_1 150 LCVSDLDASIDFYTNAIGMRLLRkrsllpETPAMVAF-LAFSP-QDADELVHSPegadglatprielrylygnENISPDTGLGEIVINNcPDTAAHAATIDEWGGH-ATEIEN---GTY--RFTDPDGYLFRL 274
                  68*********************99999877888888.45553.5578888887788888888899999999889999999999999777*************999.567776...544..68*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.74
# Mc/sec: 897.01
//
Query:       MMETSP0890-20130614|33692_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   14.8   0.7       0.03   13.9   0.5    1.4  1  PF02740.9 Colipase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02740.9  Colipase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   2.2e-06      0.03      10      22 ..      61      73 ..      55      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-06
    PF02740.9 10 lYGiYYkCPCERG 22
                  YG  YkCPCE G
  MMETSP0890-20130614|33692_1 61 TYGASYKCPCELG 73
                 5**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 694.24
//
Query:       MMETSP0890-20130614|33693_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-08   32.9   2.5      0.012   16.0   0.0    3.1  2  PF00035.20 Double-stranded RNA binding motif


Domain annotation for each model (and alignments):
>> PF00035.20  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.6e-07     0.012       1      64 [.      43     106 ..      43     109 .. 0.71
   2 !   15.2   0.4   1.6e-06     0.022       5      67 .]     237     308 ..     233     308 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 8.6e-07
                  HHHHHHHHHHHCT.SECEEEEEEEECTTSSS-EEEEEEEE--CEEEE--BSSHHHHHHHHHHHHH CS
   PF00035.20   1 pkskLqelcqkkg.kppnyeyvseegpphslkkFtvtvkvngklygtGvgssKKeAeqlAAekAL 64 
                  +k +L++lc k + + pn+ + se g+  ++++ +++++   +  g G g +K +A+q+A+ ++ 
  MMETSP0890-20130614|33693_1  43 YKGQLMQLCIKCNqPLPNFDTMSESGGWQHKPRKKISITCF-NFTGNGSGYTKLQAQQSASYQIF 106
                  799****7777775888888888888877755444433332.344478888*********98876 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.6e-06
                  HHHHHHHCT........SECEEEEEEEECTTSSS-..EEEEEEEE--CEEE.E--BSSHHHHHHHHHHHHHHHH CS
   PF00035.20   5 Lqelcqkkg........kppnyeyvseegpphslk..kFtvtvkvngklyg.tGvgssKKeAeqlAAekALqkL 67 
                  Lq +cq+           +pn+  +   g+++ lk  +F+ +v+   + ++ +Gv+++K +A+++AA + L kL
  MMETSP0890-20130614|33693_1 237 LQNICQQCTieiprytpIQPNTADIFYRGHEKGLKleTFIFQVEA--FNFTgRGVARNKVKAQHAAAFQLLIKL 308
                  777777777777777775555555555555555551255555555..444349**************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1033  (0.0755559); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.94
# Mc/sec: 925.40
//
Query:       MMETSP0890-20130614|33703_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-12   46.9   0.1    1.8e-12   46.7   0.0    1.0  1  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.3e-16   1.8e-12       1      84 [.       3      85 ..       3      86 .. 0.91

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.3e-16
                 EEEEEEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEE.EEEEEE.ESCGGGTEEEEEEEECHSSSC.SEE---E CS
   PF00168.25  1 LkvkvieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWn.ekftfe.vvaeelaeleleVkdedrfgk.ddflGea 84
                 L+vkv+ A++L   +  g ++p+v v++g+   +  +T+v ++t+nP Wn  +++f+ v+++ ++++ + + +++   + d+ +G+a
  MMETSP0890-20130614|33703_1  3 LEVKVVAARDLSEVE-GGECNPFVIVKCGN---EFEQTQVLNHTTNPEWNsARMVFQdVTENGIDHIVVRINHKNLSAQaDETIGQA 85
                 89***********55.88************...557**************99*****9********999999998887779999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 291.45
//
Query:       MMETSP0890-20130614|33706_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-12   45.6   2.8    4.3e-09   35.7   0.2    2.2  2  PF13414.1  TPR repeat
    4.7e-12   44.7   2.6     0.0001   21.8   0.3    3.4  3  PF07719.12 Tetratricopeptide repeat
    3.5e-08   32.5   1.5     0.0014   17.9   0.2    3.4  3  PF00515.23 Tetratricopeptide repeat
    1.6e-07   31.7   0.6    1.1e-05   25.7   0.1    2.2  2  PF13432.1  Tetratricopeptide repeat
     0.0014   18.4   2.4     0.0094   15.7   1.2    2.2  2  PF13424.1  Tetratricopeptide repeat
     0.0021   17.5   0.4       0.11   12.1   0.1    2.7  3  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.9   0.9       0.63   10.7   0.0    2.9  3  PF13428.1  Tetratricopeptide repeat
      0.039   14.0   2.4      0.069   13.2   1.7    1.3  1  PF13493.1  Domain of unknown function (DUF4118)
        1.1    9.5   4.8        1.3    9.2   0.0    3.0  4  PF13431.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.2   2.8e-12   4.3e-09       9      69 .]       7      72 ..       6      72 .. 0.87
   2 !   13.6   0.1   2.2e-05     0.034      30      69 .]      68     106 ..      67     106 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.8e-12
    PF13414.1  9 lGnalfkegdydeAieayekAleldpnnae......lyynlAlaylklgkdyeeAledyekAleldP 69
                 +G +++ke+++ ++++++++A++      +      ly+n+++ y++l+ d+  Al+d+e +++l P
  MMETSP0890-20130614|33706_1  7 QGKRAYKEKRWGDSVKHFTQAIQAAGTESDeeklylLYSNRSAGYQQLN-DWTNALDDAETVIALKP 72
                 799********************9643333346778************8.689***********988 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.2e-05
    PF13414.1  30 leldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  ++l p  a+ + +lA +++   k+y eA ++ +kA el+P
  MMETSP0890-20130614|33706_1  68 IALKPGFAKGWQRLATCLRV-HKRYNEAEAAQKKARELNP 106
                  7899****************.579**************98 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00074       1.1       7      30 ..       7      30 ..       5      33 .. 0.89
   2 !   12.1   0.0   8.2e-05      0.13       3      33 ..      43      73 ..      41      74 .. 0.93
   3 !   21.8   0.3   6.6e-08    0.0001       1      34 []      75     108 ..      75     108 .. 0.97

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00074
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  7 lGlayyklgdyeeAleafekAlel 30
                 +G+ +yk +++ + +++f +A++ 
  MMETSP0890-20130614|33706_1  7 QGKRAYKEKRWGDSVKHFTQAIQA 30
                 68889*****************86 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAleldPn 33
                 ++ n+   y +l+d+  Al++ e +++l P+
  MMETSP0890-20130614|33706_1 43 LYSNRSAGYQQLNDWTNALDDAETVIALKPG 73
                 7999************************996 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 6.6e-08
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+++ +l+ +++  ++y+eA++a +kA el+P+n
  MMETSP0890-20130614|33706_1  75 AKGWQRLATCLRVHKRYNEAEAAQKKARELNPGN 108
                  789*****************************87 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.075   1.1e+02      12      29 ..      12      29 ..      11      31 .. 0.89
   2 !    9.3   0.0    0.0005      0.76      11      34 .]      51      74 ..      42      74 .. 0.91
   3 !   17.9   0.2   9.5e-07    0.0014       1      34 []      75     108 ..      75     108 .. 0.97

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.075
                 HHTT-HHHHHHHHHHHHH CS
   PF00515.23 12 lklgkydeAleyyekALe 29
                 +k +++ + ++++ +A++
  MMETSP0890-20130614|33706_1 12 YKEKRWGDSVKHFTQAIQ 29
                 788999999*******97 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0005
                 HHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23 11 ylklgkydeAleyyekALelnPnn 34
                 y++l+++  Al++ e ++ l P +
  MMETSP0890-20130614|33706_1 51 YQQLNDWTNALDDAETVIALKPGF 74
                 9********************975 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 9.5e-07
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPnn 34 
                  ak + +l+ +++  ++y+eA+++ +kA elnP n
  MMETSP0890-20130614|33706_1  75 AKGWQRLATCLRVHKRYNEAEAAQKKARELNPGN 108
                  799*****************************87 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.036        55       2      27 ..       6      31 ..       5      49 .. 0.78
   2 !   25.7   0.1   7.6e-09   1.1e-05       7      64 ..      51     108 ..      45     109 .. 0.95

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.036
    PF13432.1  2 alArallraGdydeAlaaleaalala 27
                 ++++ +++ +++ + ++++ +a+ +a
  MMETSP0890-20130614|33706_1  6 DQGKRAYKEKRWGDSVKHFTQAIQAA 31
                 7899***************8887765 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 7.6e-09
    PF13432.1   7 llraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPdd 64 
                  + +++d+  Al+  e+++al P+ a  +++la +l   +r+ eA+a+ ++a +l+P++
  MMETSP0890-20130614|33706_1  51 YQQLNDWTNALDDAETVIALKPGFAKGWQRLATCLRVHKRYNEAEAAQKKARELNPGN 108
                  568899*********************************************9999985 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0053       8.1      17      75 ..      13      70 ..       8      73 .. 0.77
   2 !   15.7   1.2   6.2e-06    0.0094       7      76 ..      43     105 ..      37     107 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0053
    PF13424.1 17 rlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75
                 +++++ ++ +++ +a++ + +   d   +  ++ n +  y++l+d   Al+  e ++++
  MMETSP0890-20130614|33706_1 13 KEKRWGDSVKHFTQAIQAAGTES-DEEKLYLLYSNRSAGYQQLNDWTNALDDAETVIAL 70
                 67889999999999999974444.45566789999999999999999999877766665 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 6.2e-06
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +++n    +++l d+  Al+  e++++l        p  a+ +  la++++ +++y eA++  +kA e+ 
  MMETSP0890-20130614|33706_1  43 LYSNRSAGYQQLNDWTNALDDAETVIALK-------PGFAKGWQRLATCLRVHKRYNEAEAAQKKARELN 105
                  578888899************99999996.......999***************************9985 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.6   8.4e+03      18      29 ..      18      29 ..      12      31 .. 0.70
   2 ?    2.7   0.0     0.075   1.1e+02      11      32 ..      51      72 ..      42      74 .. 0.89
   3 !   12.1   0.1   7.3e-05      0.11       2      34 .]      76     109 ..      75     109 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.6
                 HHHHHHHH---H CS
    PF13181.1 18 dkAkeylekale 29
                   + +++ +a++
  MMETSP0890-20130614|33706_1 18 GDSVKHFTQAIQ 29
                 557889999987 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.075
                 HHHTT-HHHHHHHHH---HHHH CS
    PF13181.1 11 YrqlGdydkAkeylekalelkp 32
                 Y ql+d+ +A+   e ++ lkp
  MMETSP0890-20130614|33706_1 51 YQQLNDWTNALDDAETVIALKP 72
                 99*********99999999988 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 7.3e-05
                  --TTT---HHHHTT-HHHHHHHHH---HHHH..H CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkp.rn 34 
                  k + +l+ ++r  ++y +A+++ +ka el+p ++
  MMETSP0890-20130614|33706_1  76 KGWQRLATCLRVHKRYNEAEAAQKKARELNPgNY 109
                  7899***************************886 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.9   1.4e+03      15      34 ..      15      34 ..       5      46 .. 0.74
   2 ?   10.7   0.0   0.00042      0.63       4      43 ..      44      83 ..      41      84 .. 0.90
   3 ?    5.0   0.2     0.028        43       2      34 ..      76     108 ..      75     111 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.9
    PF13428.1 15 GdpdeAiallrralalaPdd 34
                  ++ + ++++ +a+++a ++
  MMETSP0890-20130614|33706_1 15 KRWGDSVKHFTQAIQAAGTE 34
                 67888999999999987654 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00042
    PF13428.1  4 llalarallalGdpdeAiallrralalaPddaealllLar 43
                 +  + + + +l+d+  A++ ++ ++al P+ a  + +La 
  MMETSP0890-20130614|33706_1 44 YSNRSAGYQQLNDWTNALDDAETVIALKPGFAKGWQRLAT 83
                 556777899*****************************97 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.028
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPdd 34 
                  + +++la  l+   ++ eA+a+ ++a +l+P++
  MMETSP0890-20130614|33706_1  76 KGWQRLATCLRVHKRYNEAEAAQKKARELNPGN 108
                  579999*9***********************87 PP

>> PF13493.1  Domain of unknown function (DUF4118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.7   4.5e-05     0.069       5      89 ..     142     229 ..     139     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-05
    PF13493.1   5 tivltllvla..lglaldpddpllieagfly.llavllialry.Glraglisallaslllafffflppegglsfavydpqplifflgfl 89 
                  ti++++lv++   +++++p++p+   + ++y   +  +++  y G+  g+ ++ l+ l+la++ ++p  g   f+  +p  l++++  +
  MMETSP0890-20130614|33706_1 142 TIIIIVLVIMatYSIFFRPRYPYYGGS-YPYhSYGNSYSSTSYgGSSGGVGMTGLLLLMLAAWKLPPFIGHPPFFGMSPFTLLWLIQTF 229
                  555555555545899********8887.79989999999977769*******************9885555566666666555554444 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         9   1.4e+04      16      30 ..      44      58 ..      40      61 .. 0.59
   2 ?    9.2   0.0   0.00086       1.3       3      34 .]      65      96 ..      64      96 .. 0.92
   3 ?    0.7   0.0      0.48   7.3e+02       3      14 ..      99     110 ..      97     113 .. 0.81
   4 ?   -1.8   0.1       2.9   4.3e+03      14      24 ..     169     179 ..     163     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 9
    PF13431.1 16 ynnLAelllnnGdle 30
                 y n+   ++ ++d+ 
  MMETSP0890-20130614|33706_1 44 YSNRSAGYQQLNDWT 58
                 455555566666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00086
    PF13431.1  3 ekaleldPnnadaynnLAelllnnGdleeAeq 34
                 e  ++l P  a  +++LA++l   +++ eAe+
  MMETSP0890-20130614|33706_1 65 ETVIALKPGFAKGWQRLATCLRVHKRYNEAEA 96
                 56899***********************9985 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.48
    PF13431.1   3 ekaleldPnnad 14 
                  +ka el+P n+ 
  MMETSP0890-20130614|33706_1  99 KKARELNPGNYA 110
                  7999****9975 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.9
    PF13431.1  14 daynnLAelll 24 
                    y+ +++ ++
  MMETSP0890-20130614|33706_1 169 YPYHSYGNSYS 179
                  67999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       764  (0.0558806); expected 273.4 (0.02)
Passed bias filter:                      591  (0.043227); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.42s 00:00:01.07 Elapsed: 00:00:00.64
# Mc/sec: 992.24
//
Query:       MMETSP0890-20130614|33713_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   24.3   0.2     0.0084   15.2   0.0    2.3  2  PF12204.3 Domain of unknown function (DUF3598)


Domain annotation for each model (and alignments):
>> PF12204.3  Domain of unknown function (DUF3598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.2e-07    0.0084       1      29 [.      27      56 ..      27      71 .. 0.91
   2 !    7.1   0.0   0.00019       2.5     127     232 ..     154     260 ..     148     273 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.2e-07
    PF12204.3  1 tqWenll.knlGeWkGsftrysptgelles 29
                 +qW++++   +G+W+G + +y+++g +l++
  MMETSP0890-20130614|33713_1 27 SQWDHFVeVMTGKWRGRWATYDSEGIVLRQ 56
                 69*****999**************988776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00019
    PF12204.3 127 ritlirEhrags..daaerppLtveq..LlgeWrGeaqtiypdlrepdltststasiegsqllflekeqkknkvllLPdgisltvPkqlklrkpFs.ievgWlvsenklqr 232
                  r+tl rE +++   d++e    +v+      +W+G++   +p+   p +  t+    ++   ++ +  + +    l  +++ l+vP+   +++ ++ + + W++++n l r
  MMETSP0890-20130614|33713_1 154 RVTLAREILKSDinDSDEEMWFSVDPfaWRRTWNGTTFLATPTS-GPAILDTQ---YNAADTHWHNVRTADADYTLAQGNVLLQVPTIFPAGQGLKpLRLAWMPESNLLLR 260
                  78899999988887777777666665336789*******99999.88888884...33333344444444566667778999*************8689*********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.71
# Mc/sec: 1110.42
//
Query:       MMETSP0890-20130614|33720_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 921.93
//
Query:       MMETSP0890-20130614|33731_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-05   22.5   0.0    0.00018   21.3   0.0    1.7  1  PF04408.18 Helicase associated domain (HA2)


Domain annotation for each model (and alignments):
>> PF04408.18  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-08   0.00018       2      74 ..     129     203 ..     128     278 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-08
                  HHHHHHHTTSB----.-B------GGGSSS-HHHHHHH---GGGT.-HHHHHHHHHHHTS---B---TTGHHHHH CS
   PF04408.18   2 alklLkklgAldeng.nLTdlGkklaelPldprlakmLllsaefg.cldeiltivallsvdsiflnpdkkkenae 74 
                  a+  L  +gAl +n+ +  +lGk la+lPl prla   ++++ ++   d  l++  ll++++++ +    +++a 
  MMETSP0890-20130614|33731_1 129 AMASLLDMGALHRNDeTPSALGKALARLPLPPRLALAAYYARLLNgNNDDLLALPCLLETKDPYAKHGAAANKAR 203
                  788999*****65542778****************9998777665168999999999999988888444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.40s 00:00:01.21 Elapsed: 00:00:00.76
# Mc/sec: 1674.30
//
Query:       MMETSP0890-20130614|33741_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.7   3.3       0.13   12.5   2.3    1.1  1  PF10400.4 Virulence activator alpha C-term


Domain annotation for each model (and alignments):
>> PF10400.4  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.3   9.3e-06      0.13      26      89 ..       5      65 ..       2      66 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.3e-06
                 HHHHHHHHHHHHHHHHHHHHHHSS-GGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
    PF10400.4 26 leerlelheeklatyeriekrdfadeseldrerlgqyltLrrGirfeqawieWceevlellkkr 89
                 + ++++ +++ l + e++e ++++     +r+r+  + +L  G++  +++  W e ++++l+++
  MMETSP0890-20130614|33741_1  5 VIQHQRVSQKGLRRTEKLEMELYRL--R-QRQRIVDRELLALGVMLSRNNETWREFAMNALREE 65
                 6789999************999999..4.89******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.60
# Mc/sec: 315.52
//
Query:       MMETSP0890-20130614|33738_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 453.06
//
Query:       MMETSP0890-20130614|33739_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.57
# Mc/sec: 937.88
//
Query:       MMETSP0890-20130614|33730_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-51  172.9   0.0    8.8e-51  172.3   0.0    1.2  1  PF02784.11 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
    4.5e-21   74.6   0.0    9.2e-21   73.6   0.0    1.5  1  PF00278.17 Pyridoxal-dependent decarboxylase, C-terminal sheet domain


Domain annotation for each model (and alignments):
>> PF02784.11  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0   1.3e-54   8.8e-51      15     250 ..     176     405 ..     163     406 .. 0.93

  Alignments for each domain:
  == domain 1    score: 172.3 bits;  conditional E-value: 1.3e-54
                  CCECC.EEE.EBGGG---HHHHHHHHT---EEEE-SHHHHHHHHHCTT-CCCEEEE-SS--HHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCTEEEEB-B-S-----TTSS-S---------BGGG.HHHHHHHHHHHTT-EEEEEB--------CHHHHHHHHHHHHHHHHHHH......--SEEE--------TTS.......SS-HHHHHHHHHHHHHHHHHH.--TT-EEEE----TTTT CS
   PF02784.11  15 aflprkvqvvyAvKansdkavlqllaelGlglDcaSkgElelvlaagvsperiifanpcksrselrlaleaqvvvvtvdneeeLekvaklapelelllRvkpdvdakahkklstgqedsKFGldlek.eaeellkaakelelklvGvhfhvGSqisdleafvkAveearevfeelakelGveelkiLdvGGGlgvdyte.......aeeleeiaevinaaleevfee.gvkevtiiaEpGRalva 250
                  +++p+ v++++A+K++++k++++ la+l +g+DcaS +E++l+l  g+++++i+fanpck + +l+   ++++ + t+d+ +eLek+ak +p++ lllR++ d d +++ ++++     K+G+ +e+ e++ l+ +a++l+l+l+Gv+fhvGS++ +++a+v+A++ a+++         + + k+Ld+GGG+++d +        a +     +vi+ al ++f++  ++++++i+EpGR+++ 
  MMETSP0890-20130614|33730_1 176 EAMPS-VRPHFAIKCFPNKKLIEKLANLKCGFDCASAKEVDLALKCGAKAQDIVFANPCKRQIDLNVLPQKKIPYTTFDSSDELEKIAKYCPQVSLLLRIRCD-DPSSRLPFGA-----KYGALVESdEIQILISTASSLKLNLIGVSFHVGSGAGSADAYVEAIKTAAQIP--------IPNWKLLDLGGGFCGDFDDdgharvsAAGDFSLPKVIESALIQYFPKsLFPKLQVISEPGRYFAE 405
                  66777.9************************************************************************************************.9999999999.....********88************************************9998763........345789*********988888888886666667899***********99**************86 PP

>> PF00278.17  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   1.3e-24   9.2e-21       2     112 ..     410     530 ..     409     533 .. 0.94

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 1.3e-24
                  EEEEBEEEEE--S...TTHCHCEEEESS-HHCHTTHHHHS----EEECSS.................-TTTTEEEEEEEESSS-TT--SEEEEEEEE-TTS--EEEES-----TCTC-B-CCC--.-E CS
   PF00278.17   2 lltnViavktlresdvksqsdvdvyvndgvfqspdswlidqlfpilplsr.................laeeptrkatlaGptCdsdDviakestlplelkegdllvffdvGAYtealasnfngfgdpa 112
                  l+t+Vi+++++++       ++++++ dg ++ ++++l+d++ p + +                   +++++t  +t++GptCds+D++  +++   +++ gd+l+f+++GAYt a a+ fng++ ++
  MMETSP0890-20130614|33730_1 410 LCTQVIGTRSRPN-------EKHAWIADGCYGAFNAVLYDAWAPSAAIISstsllssptnfsssitfKDQDDTTLTTVFGPTCDSLDCVFAKVPHAPTINTGDWLLFPNCGAYTLAGATDFNGIQATS 530
                  899*******996.......78999****************9999999888**************************************88888777**************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:00.91
# Mc/sec: 1485.21
//
Query:       MMETSP0890-20130614|33745_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.77
# Mc/sec: 448.15
//
Query:       MMETSP0890-20130614|33746_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.05   13.1   0.0      0.088   12.4   0.0    1.4  1  PF09857.4  Uncharacterized protein conserved in bacteria (DUF2084)
       0.13   11.8   2.4        1.1    8.8   0.2    2.2  2  PF02150.11 RNA polymerases M/15 Kd subunit


Domain annotation for each model (and alignments):
>> PF09857.4  Uncharacterized protein conserved in bacteria (DUF2084)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05     0.088      15      71 ..      28      87 ..      10      99 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
    PF09857.4 15 AqGgrielerd..engkitevecvtreGwl.lsdctlavfkkLkrkrliaSkkgkpYrit 71
                 A+G r + +r+   +++i+e+++   +Gw+ l +++ +v++k + + + +S +gkpY i 
  MMETSP0890-20130614|33746_1 28 AKGTRRKKNRGgsTTNQINEANLTPENGWVeLVELDRQVLEKGQAQAIGRSISGKPYLIR 87
                 666666666652245789***********7589************************875 PP

>> PF02150.11  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.013        92      20      28 ..      98     106 ..      89     107 .. 0.76
   2 ?    8.8   0.2   0.00016       1.1      13      34 ..     116     141 ..     115     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.013
                  TEEESSSS- CS
   PF02150.11  20 rnaCrqCgY 28 
                  +++C  C+Y
  MMETSP0890-20130614|33746_1  98 SVECGRCQY 106
                  239*****9 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00016
                  EEEETTTTE....EESSSS-EEE--- CS
   PF02150.11  13 pkedkegrn....aCrqCgYeepadq 34 
                  +++dk g++     C+ Cg+++ a++
  MMETSP0890-20130614|33746_1 116 VTDDKTGNIidegCCDVCGAKYDAST 141
                  57899999999878********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 666.05
//
Query:       MMETSP0890-20130614|33751_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 603.88
//
Query:       MMETSP0890-20130614|33749_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-07   29.6   2.8    8.9e-07   28.5   1.9    1.6  1  PF00397.21 WW domain
    4.5e-07   29.9   1.4    1.1e-06   28.7   1.0    1.6  1  PF10235.4  Microtubule-associated protein CRIPT
     0.0008   17.8   0.0     0.0011   17.4   0.0    1.1  1  PF07622.6  Protein of unknown function (DUF1583)


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.9     2e-10   8.9e-07       5      28 ..     124     147 ..     121     148 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2e-10
                  EEE.E.E-.---EEEEETTT--EES CS
   PF00397.21   5 Weersddd.dGrvYYyNheTgetqW 28 
                  W  ++ d+ +G+vYYyN+ T++t+W
  MMETSP0890-20130614|33749_1 124 WASAT-DSsSGQVYYYNTLTKQTSW 147
                  87556.4668*************** PP

>> PF10235.4  Microtubule-associated protein CRIPT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.0   2.4e-10   1.1e-06      59      79 ..       3      23 ..       1      30 [. 0.87

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.4e-10
    PF10235.4 59 kyCqkCaYkkgaCamCGkkle 79
                  yCq CaY++g+CamCG +++
  MMETSP0890-20130614|33749_1  3 AYCQVCAYENGICAMCGIRVD 23
                 6****************9984 PP

>> PF07622.6  Protein of unknown function (DUF1583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.3e-07    0.0011     221     313 ..      39     134 ..      23     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.3e-07
    PF07622.6 221 kqvavspnlevrGDFditaefedl..qaaveeegiasvelkvsldesaedklkvarrvkdekgek.lmqslslkteeGeqkrartgrrseestsGr 313
                  +++++ p ++  GD+   a+f++l  q +++ee++++v++    ++ +++ l+v++ + +++ ++ l  s+   +++G+ +    + ++++s sG+
  MMETSP0890-20130614|33749_1  39 DDISILPPVKKAGDYGTGARFQNLpeQSVQNEEKKTQVSIDREQNDATTNALEVVSSALQHNAHRiLTDSIVRPKPQGTTHDYSAWASATDSSSGQ 134
                  568899999**************965666777779999999999999999998877766655555166789999*****999999**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       833  (0.0609274); expected 273.4 (0.02)
Passed bias filter:                      635  (0.0464453); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 689.36
//
Query:       MMETSP0890-20130614|33754_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   10.5   2.8       0.37   10.2   1.9    1.1  1  PF07171.7 MlrC C-terminus


Domain annotation for each model (and alignments):
>> PF07171.7  MlrC C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   2.7e-05      0.37       5      58 ..      12      68 ..      10      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.7e-05
    PF07171.7  5 vsDnpggGgaGdttglLralle...rglkkaaiatiwDPeaveaaaaAGeGAtislr 58
                  sDn ggG+ G+   +++  l    +   + + a+++D +  + a  AG+G++i l 
  MMETSP0890-20130614|33754_1 12 FSDNGGGGAGGSIWLIVKGTLSgigHLSVDGGSASLTDTNETAYAGGAGAGGRIVLD 68
                 68****************999754344566799*******99999******999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      118  (0.00863078); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 280.09
//
Query:       MMETSP0890-20130614|33758_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   17.7   0.6     0.0074   16.1   0.0    1.8  2  PF10392.4 Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> PF10392.4  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.4e-07    0.0074      36     115 ..       2      82 ..       1      90 [. 0.93
   2 ?   -0.2   0.0     0.059   8.1e+02      78      93 ..     109     124 ..      97     127 .. 0.49

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.4e-07
    PF10392.4  36 krlnydiqeldkrlrqlit.snhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqt 115
                  krl+ ++ e++++l ++i  ++ + L+++l ++ +l  + +el+++++++ + + ++   v+       kl ++l+++ ++
  MMETSP0890-20130614|33758_1   2 KRLQRGLVEVENELMKNIEiAECERLIARLGDNGNLGRLGKELETRMNAVVMVIPQIYLTVVAAASADAKLDEKLEKVAEA 82 
                  8*************9999538899**************************************9999999999999999876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.059
    PF10392.4  78 ksslesLsasyerlks 93 
                   ++l++L +  +r+k+
  MMETSP0890-20130614|33758_1 109 LEHLHRLRQRSQRIKE 124
                  3344444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      620  (0.0453482); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 486.88
//
Query:       MMETSP0890-20130614|33773_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.2   0.0     0.0092   15.7   0.0    1.8  2  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.7e-07    0.0092      47      78 .]       1      32 [.       1      32 [. 0.95
   2 ?   -1.3   0.0      0.13   1.8e+03      56      73 ..      38      55 ..      33      78 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.7e-07
                 --STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26 47 idlpdvnvVinfdlprsvtsyiQriGRtgRag 78
                 ++l++++  i f++++++++  Q++ R++R+g
  MMETSP0890-20130614|33773_1  1 LTLTGASRLILFEPSWNPSEDDQAVARIWRFG 32
                 68999*************************87 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.13
                 EESSSBSSHHHHHHH--- CS
   PF00271.26 56 infdlprsvtsyiQriGR 73
                 +++ l +  t   + i R
  MMETSP0890-20130614|33773_1 38 FIYRLLTALTIEEHVIQR 55
                 555554444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 519.89
//
Query:       MMETSP0890-20130614|33769_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.8  10.6      0.037   13.9   7.4    1.4  1  PF05501.6 Domain of unknown function (DUF755)
        5.6    6.2  13.4        9.5    5.5   9.3    1.3  1  PF10500.4 Nuclear RNA-splicing-associated protein
        9.6    3.8  14.6         13    3.3  10.1    1.1  1  PF05110.8 AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> PF05501.6  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.4   8.1e-06     0.037      53     123 .]     147     221 ..     142     221 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.1e-06
    PF05501.6  53 qLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrnvssrsakkksakkr....kksssSSssssssssssseSs 123
                   L ql++++ + k+++  +++k  q++ +  kk+   s++++ + s  +      +sssSSss+ +s+sss +Ss
  MMETSP0890-20130614|33769_1 147 DLTQLLCHIDRFKHNRLHRYEKRQQKRLEFLKKRDVCSAQKEMSDSDFSDsifsASSSSSSSSDADSDSSSDSSS 221
                  5899*****888888888888888888888888887777777777777778997778888888888899998887 PP

>> PF10500.4  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.3    0.0021       9.5      44      88 ..     175     231 ..     156     236 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0021
    PF10500.4  44 esrkkrekkkkkrrers........sssssssssssssssssssksee....krkkr 88 
                  e  kkr++  +++            s ssssssss + s+sss +s++     rk+r
  MMETSP0890-20130614|33769_1 175 EFLKKRDVCSAQKEMSDsdfsdsifSASSSSSSSSDADSDSSSDSSSDidftIRKRR 231
                  345555555444443324555656644444444444444433333332111145555 PP

>> PF05110.8  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  10.1    0.0028        13     425     457 ..     190     222 ..     166     226 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0028
    PF05110.8 425 apsskpepaasasdsSsSeSeSeSsSgSDSesE 457
                    s  +++  sas+sSsS+S+++S+S+SDS s+
  MMETSP0890-20130614|33769_1 190 SDSDFSDSIFSASSSSSSSSDADSDSSSDSSSD 222
                  344557777888888889999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       718  (0.0525161); expected 273.4 (0.02)
Passed bias filter:                      439  (0.0321094); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.43s 00:00:01.39 Elapsed: 00:00:00.78
# Mc/sec: 1637.51
//
Query:       MMETSP0890-20130614|33783_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.7   1.8       0.21   11.2   0.8    2.1  2  PF12593.3 Microcystin synthetase C terminal


Domain annotation for each model (and alignments):
>> PF12593.3  Microcystin synthetase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   1.5e-05      0.21      17      39 ..      21      42 ..      16      43 .. 0.83
   2 ?   -0.1   0.1     0.051     7e+02       4      26 ..      36      59 ..      36      60 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
    PF12593.3 17 vftpThqaKPdWqlYANhPLqpk 39
                 +f  T+q K +W++Y  +P q++
  MMETSP0890-20130614|33783_1 21 AFGFTQQVKNEWRQYF-QPKQSQ 42
                 7999***********4.777776 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.051
    PF12593.3  4 Fvqeqsqkrvplrvf.tpThqaKP 26
                 F ++qsq  + l+ + t  hqa P
  MMETSP0890-20130614|33783_1 36 FQPKQSQFPMHLTPLaTDSHQAIP 59
                 778888888888877456778765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.42s 00:00:00.81 Elapsed: 00:00:00.65
# Mc/sec: 523.51
//
Query:       MMETSP0890-20130614|33781_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.5   3.5      0.095   12.4   2.0    1.9  2  PF03188.11 Eukaryotic cytochrome b561
      0.084   12.9   4.8      0.076   13.0   2.3    1.7  2  PF06736.6  Protein of unknown function (DUF1211)
       0.12   12.4   0.6       0.21   11.6   0.1    1.6  2  PF10864.3  Protein of unknown function (DUF2663)
        1.6    8.6  10.3       0.73    9.6   1.9    2.4  2  PF14017.1  Protein of unknown function (DUF4233)


Domain annotation for each model (and alignments):
>> PF03188.11  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.0   2.8e-05     0.095      31      88 ..       6      71 ..       1      74 [. 0.78
   2 ?    3.6   0.4     0.014        49      36      64 ..      53      81 ..      41     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-05
   PF03188.11 31 kktkkllHlvlhllalvlgvvGllav..fkfhnek......eiknlyslHswlGlltvillllqll 88
                 ++ +++lHlvl+ l++ ++ +G l++   + h+++          + ++H  l +l++ill lql+
  MMETSP0890-20130614|33781_1  6 RQKMRTLHLVLQSLGIGFAYLGALMIavARAHDDAwhwtaiFSGLFATVHDALSFLAMILLSLQLF 71
                 678899****************87550045555557666443567999************999985 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.014
   PF03188.11 36 llHlvlhllalvlgvvGllavfkfhneke 64
                 ++H +l +la++l  + l+a+++ ++e+e
  MMETSP0890-20130614|33781_1 53 TVHDALSFLAMILLSLQLFAITRGKSEQE 81
                 78999999999999999999988888775 PP

>> PF06736.6  Protein of unknown function (DUF1211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.53   1.8e+03      40      40 ..      51      51 ..       7      73 .. 0.61
   2 ?   13.0   2.3   2.2e-05     0.076      33      71 ..      96     134 ..      51     141 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.53
    PF06736.6 40 a 40
                  
  MMETSP0890-20130614|33781_1 51 F 51
                 1 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.2e-05
    PF06736.6  33 esllaaLaallpellaYllsFlivallWfahhrlfqhvk 71 
                   ++  ++a+ +p++ +Yl++F i+ l W++ +++  ++ 
  MMETSP0890-20130614|33781_1  96 AQISTLIAQGFPSISMYLVAFSILLLWWANAVQVHLMYV 134
                  66777788999*******************999887765 PP

>> PF10864.3  Protein of unknown function (DUF2663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.2e-05      0.21      15      88 ..       8      84 ..       6      94 .. 0.66
   2 ?   -1.3   0.0      0.62   2.1e+03      51      73 ..     102     124 ..      84     139 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.2e-05
    PF10864.3 15 klekqtlllqwaslivlllf..viyliakvtesasveellsallassvylllll.llalayitakylkkKeeKaEke 88
                 k++  +l+lq +++ ++ l   +i +++   ++ ++++++s l+a+    l +l ++ l++    + + K+e+ E+ 
  MMETSP0890-20130614|33781_1  8 KMRTLHLVLQSLGIGFAYLGalMIAVARAHDDAWHWTAIFSGLFATVHDALSFLaMILLSLQLFAITRGKSEQEEEK 84
                 5566778888777666555500555555555699*********9987765555504555566667777888877764 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.62
    PF10864.3  51 llsallassvylllllllalayi 73 
                  + + + + s+yl+++ +l l + 
  MMETSP0890-20130614|33781_1 102 IAQGFPSISMYLVAFSILLLWWA 124
                  44445555555544443333333 PP

>> PF14017.1  Protein of unknown function (DUF4233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.6     0.019        64       8      42 ..      14      49 ..       7      76 .. 0.62
   2 ?    9.6   1.9   0.00021      0.73      59      94 ..      90     126 ..      84     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.019
    PF14017.1  8 LilEaivvllallvvlklrd.galstavalvvvlvl 42
                 L+l+++ +++a l +l+++   a++ a+ ++++   
  MMETSP0890-20130614|33781_1 14 LVLQSLGIGFAYLGALMIAVaRAHDDAWHWTAIFSG 49
                 777888888887776666554333444444443332 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00021
    PF14017.1  59 lalglvlQvl.liaggfvvpamfvvgivFallWvyal 94 
                  l +   +Q+  lia gf   +m++v++  +llW++ +
  MMETSP0890-20130614|33781_1  90 LDAVSFAQIStLIAQGFPSISMYLVAFSILLLWWANA 126
                  556667888889**********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.85
# Mc/sec: 451.08
//
Query:       MMETSP0890-20130614|33788_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-26   92.5   1.3    2.3e-26   92.2   0.9    1.0  1  PF00083.19 Sugar (and other) transporter
    1.5e-17   63.2   9.4    1.8e-17   63.0   6.5    1.0  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
        6.1    6.1   6.5         14    4.9   0.6    2.3  2  PF13567.1  Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.9     5e-30   2.3e-26      44     247 ..      33     240 ..       4     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 5e-30
   PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiig.lglnktsnadgwrillglqlvpallllllllflpeSprylvlkgkleeArevlkk...lrgsedadqeiqeekdslersreee......aswkelfsq 247
                   s + gl+  s+  g + G+l+ g++ad  GR  +l++a++l +i +vl+a a+   s+ +l+++R+i+G+g+G+   +++ +++E  pkk +g l+ l   ++ +G l+aa  g +++++        +l+ ++++pa+l  ++ l++peSpr++  kg++   ++ +++   +++++ +++ +  ++++ +++++ +      +++ +l++ 
  MMETSP0890-20130614|33788_1  33 ESWQRGLLGTSVYSGMFAGGLLCGPVADSKGRSFTLIAATALISIFGVLSAYAP---SFNLLCLARFIAGIGMGASLPVSSSLLQETVPKKYKGGLACLVFAGFNLGELFAAKAGiYAFQRPDP---STWLFLVAAIPAILTWAVSLIVPESPRFMAAKGDKIGVERWFRRvakMNNKDIDKDIFPPIRATSDQTISISstvermCTVTTLKQD 240
                  46778999999999****************************************...******************************************************9887245577777...889999****************************99999999987767777888888899999999998887666666666666655 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   6.5   3.9e-21   1.8e-17       4     178 ..       6     180 ..       2     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 3.9e-21
   PF07690.11   4 aaflaalarsilgpalpl.alaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg.WravFlilailsllaavlvllllprepp 178
                  a++ aa ++ ++ ++l + +l+e  g+ + + g+l t  + g++++ ll G+++d  Gr  +l+++ +l +++++l ++ +++++ll+++r+++G+g+ga +p++++l+ +++pk+ +g    l+ agf+lG ++++ +g +  +     +++Fl++ai ++l    v l +p++p+
  MMETSP0890-20130614|33788_1   6 AMVYAADGAEVTVMSLVArTLGEKWGLESWQRGLLGTSVYSGMFAGGLLCGPVADSKGRSFTLIAATALISIFGVLSAY-APSFNLLCLARFIAGIGMGASLPVSSSLLQETVPKKYKGGLACLVFAGFNLGELFAAKAGIYAFQRPDpSTWLFLVAAIPAILTWA-VSLIVPESPR 180
                  4444444555677778888999999999999******************************888888888888677777.66677****************************************************999999999989999*******9999844.3344444443 PP

>> PF13567.1  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.6     0.003        14       2      60 ..      51     106 ..      50     122 .. 0.62
   2 ?    4.2   0.4    0.0048        22       2      33 ..     143     174 ..     123     199 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.003
    PF13567.1   2 lGilla.alaslplgllllalllalllllllflkrrkrrrlllllglllllaglylllra 60 
                   G+l++    s + ++ l+a+ +++ ++++l      +  ++ ll+l+ ++ag+++++ +
  MMETSP0890-20130614|33788_1  51 GGLLCGpVADSKGRSFTLIAATALISIFGVLS----AYAPSFNLLCLARFIAGIGMGASL 106
                  69999965555555555555555555555554....455555566666666666665555 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0048
    PF13567.1   2 lGillaalaslplgllllalllalllllllfl 33 
                  +Gi + + +  +++l+l+a++ a+l++++ + 
  MMETSP0890-20130614|33788_1 143 AGIYAFQRPDPSTWLFLVAAIPAILTWAVSLI 174
                  46666678888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 980.00
//
Query:       MMETSP0890-20130614|33802_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-30  104.1  18.3    2.1e-10   40.0   0.1    6.3  7  PF13414.1  TPR repeat
    2.5e-21   73.9   8.0     0.0066   16.4   0.0    8.0  8  PF13431.1  Tetratricopeptide repeat
    1.9e-20   71.4  18.2    1.2e-05   24.5   0.0    9.4 10  PF00515.23 Tetratricopeptide repeat
    4.8e-19   66.5  20.4    2.1e-05   23.9   0.0    8.9  9  PF07719.12 Tetratricopeptide repeat
    5.5e-18   65.0  15.3    6.8e-06   26.4   0.3    5.8  6  PF13432.1  Tetratricopeptide repeat
    2.1e-15   55.6  18.6    0.00043   20.5   0.0    7.2  7  PF13428.1  Tetratricopeptide repeat
    2.1e-12   46.7  19.9    3.4e-06   26.7   0.4    5.7  7  PF13424.1  Tetratricopeptide repeat
    2.6e-11   42.3  15.3    0.00015   21.1   0.0    7.0  7  PF13176.1  Tetratricopeptide repeat
    2.1e-08   33.2  12.9       0.29   10.8   0.0    7.6  8  PF13181.1  Tetratricopeptide repeat
    1.8e-07   30.7  12.5      0.044   13.5   0.2    5.2  6  PF13371.1  Tetratricopeptide repeat
    5.6e-07   29.5   8.1     0.0048   16.8   0.6    3.4  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
    1.7e-05   24.4  20.0       0.35   10.7   0.1    6.4  7  PF13374.1  Tetratricopeptide repeat
    0.00013   21.0   2.2      0.059   12.3   0.0    3.1  3  PF13429.1  Tetratricopeptide repeat
     0.0002   21.5  10.8       0.44   11.0   0.0    5.5  4  PF13174.1  Tetratricopeptide repeat
     0.0075   16.1   8.4       0.23   11.3   0.7    3.8  4  PF12688.2  Tetratrico peptide repeat
  ------ inclusion threshold ------
      0.034   14.3   5.0        6.5    6.9   0.0    3.4  3  PF03704.12 Bacterial transcriptional activator domain
      0.039   13.3   0.0       0.24   10.7   0.0    2.1  2  PF12925.2  E2 domain of amyloid precursor protein
       0.57   10.7   3.7          7    7.3   0.0    4.3  4  PF08238.7  Sel1 repeat
        1.2    8.9   5.7        3.1    7.6   0.1    3.9  4  PF04212.13 MIT (microtubule interacting and transport) domain
        8.3    7.0  17.5         36    5.0   0.0    5.9  5  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1        68      35      53 ..       9      26 ..       4      31 .. 0.79
   2 !   22.6   0.5   7.7e-08   5.3e-05      24      61 ..      30      66 ..      27      67 .. 0.93
   3 !   40.0   0.1     3e-13   2.1e-10       4      67 ..      75     137 ..      72     138 .. 0.94
   4 !   33.5   0.3     3e-11   2.1e-08       7      69 .]     112     174 ..     111     174 .. 0.94
   5 !   21.8   0.2   1.4e-07   9.8e-05       6      50 ..     146     190 ..     141     197 .. 0.89
   6 !   14.9   0.0     2e-05     0.014      25      66 ..     202     246 ..     200     249 .. 0.85
   7 !   14.3   0.6     3e-05      0.02      22      68 ..     237     284 ..     235     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.1
    PF13414.1 35 nnaelyynlAlaylklgkd 53
                 + ael+yn + + ++lg +
  MMETSP0890-20130614|33802_1  9 DRAELFYNVGNVRERLG-M 26
                 4699************9.4 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 7.7e-08
    PF13414.1 24 eayekAleldpnnaelyynlAlaylklgkdyeeAledy 61
                  ay+++l+l +++ e+ +nlAl+++++g  y+eA+ ++
  MMETSP0890-20130614|33802_1 30 SAYRECLALKESHNEARNNLALLLMRRG-AYVEAVSEL 66
                 68**************************.9****9875 PP

  == domain 3    score: 40.0 bits;  conditional E-value: 3e-13
    PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  e   +lG al  +g+ +eAie+ye A+  +p+++  + nl+ a++kl ++ ++A e+ ekA el
  MMETSP0890-20130614|33802_1  75 ENQINLGVALECLGKTEEAIEQYEAAITQNPKDPRPLTNLGNALIKL-DHIQRAFECHEKAAEL 137
                  67789*****************************************9.7************886 PP

  == domain 4    score: 33.5 bits;  conditional E-value: 3e-11
    PF13414.1   7 kelGnalfkegdydeAieayekAleldpn.naelyynlAlaylklgkdyeeAledyekAleldP 69 
                   +lGnal+k+   + A e+ ekA el  + +a l +nlA +++  g+  ++A++ ye +l+ldP
  MMETSP0890-20130614|33802_1 112 TNLGNALIKLDHIQRAFECHEKAAELGGDtDATLRFNLATSLEAIGQ-VQAAVAQYEAVLKLDP 174
                  79************************86659***************5.79*************9 PP

  == domain 5    score: 21.8 bits;  conditional E-value: 1.4e-07
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylkl 50 
                   ++l+  l   g+ + A+++ye  l+ldp + +++ nlAla++ l
  MMETSP0890-20130614|33802_1 146 RFNLATSLEAIGQVQAAVAQYEAVLKLDPLCSSAHINLALALQDL 190
                  57889999999******************************9875 PP

  == domain 6    score: 14.9 bits;  conditional E-value: 2e-05
    PF13414.1  25 ayekAleldpnnaelyynlAlaylklgkdye...eAledyekAle 66 
                  ++e A+el pn+ ++++nl+   l+  +d     +Al+++ekA +
  MMETSP0890-20130614|33802_1 202 HLETAVELIPNDLDAWLNLGDFRLESVDDNTmsiRALDAFEKACK 246
                  7999*********************98743355599999999976 PP

  == domain 7    score: 14.3 bits;  conditional E-value: 3e-05
    PF13414.1  22 AieayekAleldpn..naelyynlAlaylklgkdyeeAledyekAleld 68 
                  A++a+ekA +  +   ++e+y++ A a+ +l+ + ++A+++++++++l+
  MMETSP0890-20130614|33802_1 237 ALDAFEKACKTKEGqfSPEAYLGKASALSQLN-QIQAAIDAAKHSIRLA 284
                  9*********9876568**************8.68***********986 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.8   1.9e+03      12      27 ..      10      25 ..       6      30 .. 0.67
   2 !   14.2   0.2   4.8e-05     0.033       1      32 [.      31      62 ..      31      64 .. 0.94
   3 ?    6.3   0.0     0.017        11      16      34 .]      77      95 ..      72      95 .. 0.87
   4 !   16.4   0.0   9.7e-06    0.0066       2      31 ..      97     126 ..      96     129 .. 0.89
   5 !   11.6   0.0   0.00033      0.23       2      33 ..     131     163 ..     130     164 .. 0.84
   6 ?    6.3   0.0     0.016        11       2      26 ..     166     190 ..     165     198 .. 0.89
   7 !   11.3   0.0   0.00042      0.29       2      24 ..     203     225 ..     202     236 .. 0.85
   8 ?    4.1   0.0     0.084        57      12      33 ..     253     274 ..     240     275 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.8
    PF13431.1 12 nadaynnLAelllnnG 27
                  a++++n +++  ++G
  MMETSP0890-20130614|33802_1 10 RAELFYNVGNVRERLG 25
                 3777777777777666 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 4.8e-05
    PF13431.1  1 lyekaleldPnnadaynnLAelllnnGdleeA 32
                 +y+++l+l   + +a+nnLA+ll ++G + eA
  MMETSP0890-20130614|33802_1 31 AYRECLALKESHNEARNNLALLLMRRGAYVEA 62
                 69*************************99888 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.017
    PF13431.1 16 ynnLAelllnnGdleeAeq 34
                   nL+++l  +G++eeA++
  MMETSP0890-20130614|33802_1 77 QINLGVALECLGKTEEAIE 95
                 57***************85 PP

  == domain 4    score: 16.4 bits;  conditional E-value: 9.7e-06
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdlee 31 
                  ye a+ ++P+++  ++nL+++l ++   ++
  MMETSP0890-20130614|33802_1  97 YEAAITQNPKDPRPLTNLGNALIKLDHIQR 126
                  9*********************98776665 PP

  == domain 5    score: 11.6 bits;  conditional E-value: 0.00033
    PF13431.1   2 yekaleld.PnnadaynnLAelllnnGdleeAe 33 
                   eka el   ++a +++nLA+ l ++G+ + A 
  MMETSP0890-20130614|33802_1 131 HEKAAELGgDTDATLRFNLATSLEAIGQVQAAV 163
                  68888886256******************9996 PP

  == domain 6    score: 6.3 bits;  conditional E-value: 0.016
    PF13431.1   2 yekaleldPnnadaynnLAelllnn 26 
                  ye  l+ldP  + a+ nLA++l+++
  MMETSP0890-20130614|33802_1 166 YEAVLKLDPLCSSAHINLALALQDL 190
                  9999******************965 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 0.00042
    PF13431.1   2 yekaleldPnnadaynnLAelll 24 
                  +e a+el Pn+ da+ nL+ + l
  MMETSP0890-20130614|33802_1 203 LETAVELIPNDLDAWLNLGDFRL 225
                  789****************8865 PP

  == domain 8    score: 4.1 bits;  conditional E-value: 0.084
    PF13431.1  12 nadaynnLAelllnnGdleeAe 33 
                  +++ay  +A +l+ +++ + A+
  MMETSP0890-20130614|33802_1 253 SPEAYLGKASALSQLNQIQAAI 274
                  699**************99997 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.45   3.1e+02       1      16 [.      11      26 ..      11      42 .. 0.69
   2 !    7.2   0.0    0.0053       3.6       2      21 ..      44      63 ..      44      64 .. 0.93
   3 !   24.5   0.0   1.8e-08   1.2e-05       6      34 .]      79     107 ..      77     107 .. 0.96
   4 !   14.7   0.0   2.2e-05     0.015       4      30 ..     111     137 ..     108     138 .. 0.93
   5 !   13.4   0.0   5.6e-05     0.038       4      32 ..     146     174 ..     143     176 .. 0.94
   6 ?    0.6   0.0      0.64   4.4e+02       3      14 ..     179     190 ..     177     192 .. 0.84
   7 ?   -1.1   0.0       2.2   1.5e+03      23      34 .]     202     213 ..     201     213 .. 0.87
   8 ?   -1.5   0.0       2.9     2e+03       2       8 ..     215     221 ..     215     222 .. 0.89
   9 ?    1.6   0.1       0.3   2.1e+02      20      29 ..     237     246 ..     236     249 .. 0.86
  10 !   10.8   0.1   0.00037      0.26       1      30 [.     254     283 ..     254     284 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHTT- CS
   PF00515.23  1 akalynlGnaylklgk 16
                 a+ +yn Gn+  +lg+
  MMETSP0890-20130614|33802_1 11 AELFYNVGNVRERLGM 26
                 5677777777777664 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHTT-HHHHH CS
   PF00515.23  2 kalynlGnaylklgkydeAl 21
                 +a +nl++++++ g y eA+
  MMETSP0890-20130614|33802_1 44 EARNNLALLLMRRGAYVEAV 63
                 588***************96 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 1.8e-08
                  HHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekALelnPnn 34 
                  nlG+a+  lgk +eA+e ye A++ nP++
  MMETSP0890-20130614|33802_1  79 NLGVALECLGKTEEAIEQYEAAITQNPKD 107
                  9**************************86 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 2.2e-05
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekALel 30 
                  l nlGna+ kl   + A e+ ekA el
  MMETSP0890-20130614|33802_1 111 LTNLGNALIKLDHIQRAFECHEKAAEL 137
                  79**********************987 PP

  == domain 5    score: 13.4 bits;  conditional E-value: 5.6e-05
                  HHHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekALelnP 32 
                   +nl+  +   g+ + A++ ye +L+l+P
  MMETSP0890-20130614|33802_1 146 RFNLATSLEAIGQVQAAVAQYEAVLKLDP 174
                  58**************************9 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.64
                  HHHHHHHHHHHT CS
   PF00515.23   3 alynlGnaylkl 14 
                  a+ nl++a++ l
  MMETSP0890-20130614|33802_1 179 AHINLALALQDL 190
                  899****99876 PP

  == domain 7    score: -1.1 bits;  conditional E-value: 2.2
                  HHHHHHHHHTTH CS
   PF00515.23  23 yyekALelnPnn 34 
                  + e A+el Pn+
  MMETSP0890-20130614|33802_1 202 HLETAVELIPND 213
                  6799******97 PP

  == domain 8    score: -1.5 bits;  conditional E-value: 2.9
                  HHHHHHH CS
   PF00515.23   2 kalynlG 8  
                  +a+ nlG
  MMETSP0890-20130614|33802_1 215 DAWLNLG 221
                  69****9 PP

  == domain 9    score: 1.6 bits;  conditional E-value: 0.3
                  HHHHHHHHHH CS
   PF00515.23  20 AleyyekALe 29 
                  Al+++ekA +
  MMETSP0890-20130614|33802_1 237 ALDAFEKACK 246
                  9*******76 PP

  == domain 10    score: 10.8 bits;  conditional E-value: 0.00037
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                  ++a+ +++ a+ +l++ + A+++ +  ++l
  MMETSP0890-20130614|33802_1 254 PEAYLGKASALSQLNQIQAAIDAAKHSIRL 283
                  58********************98877766 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.59     4e+02       1      17 [.      11      27 ..      11      42 .. 0.73
   2 ?    6.5   0.1     0.012       8.1       2      22 ..      44      64 ..      43      67 .. 0.88
   3 !   23.9   0.0   3.1e-08   2.1e-05       5      34 .]      78     107 ..      74     107 .. 0.93
   4 !   15.4   0.0   1.7e-05     0.011       4      30 ..     111     137 ..     108     140 .. 0.92
   5 !   16.2   0.0   9.1e-06    0.0062       4      32 ..     146     174 ..     143     176 .. 0.93
   6 ?   -1.2   0.0       3.4   2.3e+03       3      14 ..     179     190 ..     177     191 .. 0.78
   7 ?    0.2   0.0       1.2   7.9e+02      23      34 .]     202     213 ..     200     213 .. 0.88
   8 ?    1.9   0.1      0.35   2.4e+02      19      29 ..     236     246 ..     235     249 .. 0.88
   9 !    7.3   0.2    0.0066       4.5       1      31 [.     254     284 ..     254     285 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHTT-H CS
   PF07719.12  1 aealynlGlayyklgdy 17
                 ae+ yn G++ ++lg  
  MMETSP0890-20130614|33802_1 11 AELFYNVGNVRERLGMN 27
                 67888888888888865 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHTT-HHHHHH CS
   PF07719.12  2 ealynlGlayyklgdyeeAle 22
                 ea +nl+l+++++g y eA+ 
  MMETSP0890-20130614|33802_1 44 EARNNLALLLMRRGAYVEAVS 64
                 7889***************85 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 3.1e-08
                  HHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                   nlG a++ lg+ eeA+e +e A+  +P++
  MMETSP0890-20130614|33802_1  78 INLGVALECLGKTEEAIEQYEAAITQNPKD 107
                  79**************************86 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAlel 30 
                  l nlG+a++kl++ ++A e+ ekA el
  MMETSP0890-20130614|33802_1 111 LTNLGNALIKLDHIQRAFECHEKAAEL 137
                  779*********************998 PP

  == domain 5    score: 16.2 bits;  conditional E-value: 9.1e-06
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleldP 32 
                   +nl+ ++++ g+ + A++ +e +l+ldP
  MMETSP0890-20130614|33802_1 146 RFNLATSLEAIGQVQAAVAQYEAVLKLDP 174
                  69**************************9 PP

  == domain 6    score: -1.2 bits;  conditional E-value: 3.4
                  HHHHHHHHHHHT CS
   PF07719.12   3 alynlGlayykl 14 
                  a+ nl+la+  l
  MMETSP0890-20130614|33802_1 179 AHINLALALQDL 190
                  799999998765 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 1.2
                  HHHHHHHH-TTS CS
   PF07719.12  23 afekAleldPnn 34 
                  ++e A+el Pn+
  MMETSP0890-20130614|33802_1 202 HLETAVELIPND 213
                  899*******97 PP

  == domain 8    score: 1.9 bits;  conditional E-value: 0.35
                  HHHHHHHHHHH CS
   PF07719.12  19 eAleafekAle 29 
                  +Al+afekA +
  MMETSP0890-20130614|33802_1 236 RALDAFEKACK 246
                  69*******87 PP

  == domain 9    score: 7.3 bits;  conditional E-value: 0.0066
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                  +ea+   + a+ +l++ + A++a + +++l+
  MMETSP0890-20130614|33802_1 254 PEAYLGKASALSQLNQIQAAIDAAKHSIRLA 284
                  6999*********************999985 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       5.8     4e+03       2      15 ..       9      22 ..       8      25 .. 0.75
   2 !   10.9   0.1   0.00077      0.53      19      52 ..      31      65 ..      26      68 .. 0.83
   3 !   13.6   0.0   0.00011     0.073      10      50 ..      87     127 ..      78     141 .. 0.85
   4 !   26.4   0.3   9.9e-09   6.8e-06       2      44 ..     148     190 ..     147     201 .. 0.92
   5 ?    5.0   0.0     0.054        37      20      43 ..     203     226 ..     199     230 .. 0.83
   6 !   15.1   0.5   3.5e-05     0.024      15      60 ..     236     283 ..     235     293 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 5.8
    PF13432.1  2 alArallraGdyde 15
                 ++A+++++ G+++e
  MMETSP0890-20130614|33802_1  9 DRAELFYNVGNVRE 22
                 57888888888765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00077
    PF13432.1 19 aleaalalaPeaaeallllaeallrlgrldeAa.a 52
                 a+++ lal   + ea+ +la +l+r+g + eA+ +
  MMETSP0890-20130614|33802_1 31 AYRECLALKESHNEARNNLALLLMRRGAYVEAVsE 65
                 666667777779********************844 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 0.00011
    PF13432.1  10 aGdydeAlaaleaalalaPeaaeallllaeallrlgrldeA 50 
                  +G+ +eA++++eaa+ ++P++++ l +l+ al +l + ++A
  MMETSP0890-20130614|33802_1  87 LGKTEEAIEQYEAAITQNPKDPRPLTNLGNALIKLDHIQRA 127
                  7999******************9999999999999888887 PP

  == domain 4    score: 26.4 bits;  conditional E-value: 9.9e-09
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrl 44 
                   lA +l + G++++A+a++ea+l+l+P++  a+ +la al +l
  MMETSP0890-20130614|33802_1 148 NLATSLEAIGQVQAAVAQYEAVLKLDPLCSSAHINLALALQDL 190
                  7999**********************************99765 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.054
    PF13432.1  20 leaalalaPeaaeallllaeallr 43 
                  le+a++l P + +a+l+l+++ l+
  MMETSP0890-20130614|33802_1 203 LETAVELIPNDLDAWLNLGDFRLE 226
                  56777777************9875 PP

  == domain 6    score: 15.1 bits;  conditional E-value: 3.5e-05
    PF13432.1  15 eAlaaleaalala..PeaaeallllaeallrlgrldeAaallraalal 60 
                  +Al+a+e+a +     + +ea+l+ a al +l++ ++A+ + ++ ++l
  MMETSP0890-20130614|33802_1 236 RALDAFEKACKTKegQFSPEAYLGKASALSQLNQIQAAIDAAKHSIRL 283
                  577777777777677889*********************999888844 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       1.2     8e+02       7      43 ..      10      51 ..       8      53 .. 0.77
   2 ?    2.9   0.1       0.3     2e+02       2      24 ..      44      66 ..      43      67 .. 0.87
   3 !   20.5   0.0   6.3e-07   0.00043       6      42 ..      79     115 ..      75     117 .. 0.91
   4 !    9.8   0.0    0.0017       1.2       3      42 ..     110     150 ..     108     152 .. 0.87
   5 !   18.2   0.1   3.5e-06    0.0024       3      42 ..     145     184 ..     143     187 .. 0.91
   6 !   10.4   0.0    0.0011      0.77      23      43 ..     202     222 ..     189     223 .. 0.88
   7 ?    7.4   0.8      0.01       7.1       1      29 [.     254     282 ..     254     304 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 1.2
    PF13428.1  7 larallalGdpde.....AiallrralalaPddaealllLar 43
                 +a+++ + G++ e     ++ ++r+ lal  ++ ea+ +La 
  MMETSP0890-20130614|33802_1 10 RAELFYNVGNVRErlgmnGESAYRECLALKESHNEARNNLAL 51
                 677777777777667777888999999999999999988885 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.3
    PF13428.1  2 eallalarallalGdpdeAiall 24
                 ea+  la +l+++G + eA+  l
  MMETSP0890-20130614|33802_1 44 EARNNLALLLMRRGAYVEAVSEL 66
                 68889*************98655 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 6.3e-07
    PF13428.1   6 alarallalGdpdeAiallrralalaPddaealllLa 42 
                   l+ al+ lG ++eAi+++++a+ ++P+d++ l++L+
  MMETSP0890-20130614|33802_1  79 NLGVALECLGKTEEAIEQYEAAITQNPKDPRPLTNLG 115
                  68999**************************999987 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.0017
    PF13428.1   3 allalarallalGdpdeAiallrralalaPd.daealllLa 42 
                   l  l++al+ l + ++A ++ ++a++l+ d da+++++La
  MMETSP0890-20130614|33802_1 110 PLTNLGNALIKLDHIQRAFECHEKAAELGGDtDATLRFNLA 150
                  57789***********************9873688999998 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 3.5e-06
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLa 42 
                  ++  la  l+a G++++A+a+++++l+l+P    a+++La
  MMETSP0890-20130614|33802_1 145 LRFNLATSLEAIGQVQAAVAQYEAVLKLDPLCSSAHINLA 184
                  56789*************************9999999998 PP

  == domain 6    score: 10.4 bits;  conditional E-value: 0.0011
    PF13428.1  23 llrralalaPddaealllLar 43 
                  +l+ a++l P+d++a+l+L++
  MMETSP0890-20130614|33802_1 202 HLETAVELIPNDLDAWLNLGD 222
                  79*****************96 PP

  == domain 7    score: 7.4 bits;  conditional E-value: 0.01
    PF13428.1   1 peallalarallalGdpdeAiallrrala 29 
                  pea+l  a al +l++ ++Ai++++  ++
  MMETSP0890-20130614|33802_1 254 PEAYLGKASALSQLNQIQAAIDAAKHSIR 282
                  79********************9988655 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.4   0.00037      0.25       2      67 ..       8      64 ..       7      69 .. 0.84
   2 !   15.1   0.6   2.1e-05     0.014       7      76 ..      45     104 ..      42     106 .. 0.85
   3 !   18.0   0.5   2.7e-06    0.0019      10      75 ..      79     137 ..      74     137 .. 0.90
   4 !   26.7   0.4     5e-09   3.4e-06       8      76 ..     111     173 ..     107     174 .. 0.92
   5 !   16.0   0.4   1.1e-05    0.0077       5      52 ..     143     190 ..     140     210 .. 0.88
   6 ?    0.4   0.1      0.85   5.8e+02      48      48 ..     216     216 ..     173     249 .. 0.51
   7 !    7.3   0.2    0.0056       3.9       7      44 ..     256     294 ..     252     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00037
    PF13424.1  2 pdlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAle 67
                 +d a + +n ++v +rlg+  e+   y+++l+l     + h +   a nnla l++++g y eA+ 
  MMETSP0890-20130614|33802_1  8 DDRAELFYNVGNVRERLGMNGESA--YRECLALK----ESHNE---ARNNLALLLMRRGAYVEAVS 64
                 688999999999*99999888887..*****996....67776...68999999999999999986 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.1e-05
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  + nnlal+l+r g y eA +           l+ + ++ +    nl+ +++ lg+ +eA+e +e A++  
  MMETSP0890-20130614|33802_1  45 ARNNLALLLMRRGAYVEAVSE----------LKCTGLESCENQINLGVALECLGKTEEAIEQYEAAITQN 104
                  569999999999999999944..........55566899999***********************99865 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 2.7e-06
    PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  nl+ +l+ lg+ +eA+e ye a++       ++ d  r l+nl+n++ +l   + A e++ekA e+
  MMETSP0890-20130614|33802_1  79 NLGVALECLGKTEEAIEQYEAAITQ------NPKD-PRPLTNLGNALIKLDHIQRAFECHEKAAEL 137
                  9**********************87......3344.789************************886 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 5e-09
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  l+nl+++l +l   ++A e+ eka el    gd++   a++ +nla+ ++a g+ ++A++ +e +l+++
  MMETSP0890-20130614|33802_1 111 LTNLGNALIKLDHIQRAFECHEKAAEL---GGDTD---ATLRFNLATSLEAIGQVQAAVAQYEAVLKLD 173
                  78**********************976...46655...9***************************986 PP

  == domain 5    score: 16.0 bits;  conditional E-value: 1.1e-05
    PF13424.1   5 atilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnl 52 
                  at+ +nla++l++ g+ + A + ye +l+l  +   +h ++a al +l
  MMETSP0890-20130614|33802_1 143 ATLRFNLATSLEAIGQVQAAVAQYEAVLKLDPLCSSAHINLALALQDL 190
                  6778999999999********999999999888888888888888776 PP

  == domain 6    score: 0.4 bits;  conditional E-value: 0.85
    PF13424.1  48 a 48 
                  a
  MMETSP0890-20130614|33802_1 216 A 216
                  3 PP

  == domain 7    score: 7.3 bits;  conditional E-value: 0.0056
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalel.lrelgddhpd 44 
                  ++   a +l +l + + A++  ++++ l ++++++ hpd
  MMETSP0890-20130614|33802_1 256 AYLGKASALSQLNQIQAAIDAAKHSIRLaAAQQHPSHPD 294
                  5778899999999***************99999999998 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.5   1.7e+03      20      34 ..      30      44 ..      29      46 .. 0.78
   2 ?    4.3   0.0     0.054        37       3      20 ..      47      64 ..      45      67 .. 0.89
   3 !   21.1   0.0   2.2e-07   0.00015       4      35 ..      79     108 ..      78     109 .. 0.93
   4 ?    6.5   0.0      0.01       7.1       2      28 ..     111     137 ..     111     142 .. 0.89
   5 !    8.8   0.0    0.0019       1.3       3      33 ..     147     175 ..     144     178 .. 0.87
   6 ?   -1.6   0.0       4.1   2.8e+03       1       8 [.     216     223 ..     216     231 .. 0.77
   7 ?    6.2   0.1     0.014       9.4       1      35 [.     256     290 ..     256     291 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 2.5
    PF13176.1 20 elyeraLaltkdpld 34
                 ++y+++Lal+++ ++
  MMETSP0890-20130614|33802_1 30 SAYRECLALKESHNE 44
                 689**9999988666 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.054
    PF13176.1  3 lnLarlysrlgdyekAie 20
                 +nLa l +r+g y +A++
  MMETSP0890-20130614|33802_1 47 NNLALLLMRRGAYVEAVS 64
                 8***************97 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 2.2e-07
    PF13176.1   4 nLarlysrlgdyekAielyeraLaltkdplda 35 
                  nL+++ + lg++e+Aie ye+  a+t+ p d+
  MMETSP0890-20130614|33802_1  79 NLGVALECLGKTEEAIEQYEA--AITQNPKDP 108
                  9********************..**9999886 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.01
    PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                  l nL+++  +l   ++A e++e+a +l
  MMETSP0890-20130614|33802_1 111 LTNLGNALIKLDHIQRAFECHEKAAEL 137
                  68*********************7766 PP

  == domain 5    score: 8.8 bits;  conditional E-value: 0.0019
    PF13176.1   3 lnLarlysrlgdyekAielyeraLaltkdpl 33 
                  +nLa   ++ g+ + A+  ye+  +l+ dpl
  MMETSP0890-20130614|33802_1 147 FNLATSLEAIGQVQAAVAQYEA--VLKLDPL 175
                  79********************..7777775 PP

  == domain 6    score: -1.6 bits;  conditional E-value: 4.1
    PF13176.1   1 allnLarl 8  
                  a+lnL++ 
  MMETSP0890-20130614|33802_1 216 AWLNLGDF 223
                  68888886 PP

  == domain 7    score: 6.2 bits;  conditional E-value: 0.014
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdplda 35 
                  a+l  a++ s+l++ + Ai++ + +++l+ +++++
  MMETSP0890-20130614|33802_1 256 AYLGKASALSQLNQIQAAIDAAKHSIRLAAAQQHP 290
                  677789***************99999998887765 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.65   4.4e+02      21      32 ..      29      40 ..      27      43 .. 0.84
   2 ?    1.2   0.0       0.5   3.4e+02       2      24 ..      44      66 ..      42      67 .. 0.87
   3 !   10.8   0.0   0.00043      0.29       5      32 ..      78     105 ..      74     108 .. 0.87
   4 ?    3.5   0.0     0.093        64       3      30 ..     110     137 ..     108     140 .. 0.91
   5 !    9.7   0.0     0.001      0.69       3      32 ..     145     174 ..     143     175 .. 0.94
   6 ?   -1.7   0.0       4.5     3e+03       3      14 ..     179     190 ..     177     191 .. 0.83
   7 ?    0.8   0.0       0.7   4.8e+02      20      31 ..     237     248 ..     214     252 .. 0.58
   8 !    6.8   0.1    0.0084       5.7       2      31 ..     255     284 ..     254     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.65
                 HHHHH---HHHH CS
    PF13181.1 21 keylekalelkp 32
                 +++++++l lk 
  MMETSP0890-20130614|33802_1 29 ESAYRECLALKE 40
                 689*****9986 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.5
                 --TTT---HHHHTT-HHHHHHHH CS
    PF13181.1  2 kayynlGdiYrqlGdydkAkeyl 24
                 +a++nl+++++  G y +A + l
  MMETSP0890-20130614|33802_1 44 EARNNLALLLMRRGAYVEAVSEL 66
                 5789************9998876 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00043
                  TT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   5 ynlGdiYrqlGdydkAkeylekalelkp 32 
                  +nlG +++ lG++++A+e +e a+  +p
  MMETSP0890-20130614|33802_1  78 INLGVALECLGKTEEAIEQYEAAITQNP 105
                  799999999**************98877 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.093
                  -TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalel 30 
                   ++nlG ++ +l  +  A e+ eka el
  MMETSP0890-20130614|33802_1 110 PLTNLGNALIKLDHIQRAFECHEKAAEL 137
                  589******************9999886 PP

  == domain 5    score: 9.7 bits;  conditional E-value: 0.001
                  -TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                  +++nl+  ++  G+  +A + +e +l+l+p
  MMETSP0890-20130614|33802_1 145 LRFNLATSLEAIGQVQAAVAQYEAVLKLDP 174
                  6899************************98 PP

  == domain 6    score: -1.7 bits;  conditional E-value: 4.5
                  -TTT---HHHHT CS
    PF13181.1   3 ayynlGdiYrql 14 
                  a++nl++++ +l
  MMETSP0890-20130614|33802_1 179 AHINLALALQDL 190
                  799999999887 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.7
                  HHHHHH---HHH CS
    PF13181.1  20 Akeylekalelk 31 
                  A+ ++eka + k
  MMETSP0890-20130614|33802_1 237 ALDAFEKACKTK 248
                  788888887765 PP

  == domain 8    score: 6.8 bits;  conditional E-value: 0.0084
                  --TTT---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelk 31 
                  +ay+ +++++ ql+++ +A+ + +  + l+
  MMETSP0890-20130614|33802_1 255 EAYLGKASALSQLNQIQAAIDAAKHSIRLA 284
                  68999***************9999888776 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.011       7.5      22      52 ..      36      66 ..      30      77 .. 0.89
   2 !    8.9   0.0    0.0018       1.2      35      63 ..      80     108 ..      72     111 .. 0.89
   3 !   13.5   0.2   6.5e-05     0.044       3      62 ..     116     189 ..     114     200 .. 0.83
   4 ?   -0.3   0.1       1.3   8.7e+02      48      66 ..     186     204 ..     182     238 .. 0.64
   5 ?   -1.4   0.0       2.8   1.9e+03      21      36 ..     206     221 ..     203     251 .. 0.64
   6 !    7.0   0.3    0.0067       4.6      28      66 ..     253     296 ..     230     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.011
    PF13371.1 22 lllaPddpyerRDrGlllaqlgclaaAaedL 52
                 l+l+  + + r   +lll+++g++ +A+ +L
  MMETSP0890-20130614|33802_1 36 LALKESHNEARNNLALLLMRRGAYVEAVSEL 66
                 788889999999****************999 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0018
    PF13371.1  35 rGlllaqlgclaaAaedLeaflelcpdap 63 
                   G +l+ lg  ++A+e +ea++ + p +p
  MMETSP0890-20130614|33802_1  80 LGVALECLGKTEEAIEQYEAAITQNPKDP 108
                  6999999*******************988 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 6.5e-05
    PF13371.1   3 aiylreedferALavverllllaPd.dpyerRDrGlllaqlgclaaAaedLeaflelcp.............da 62 
                  ++++  ++ +rA ++ e  ++l  d d+ +r   +  l+  g+++aA++ +ea l+l+p             ++
  MMETSP0890-20130614|33802_1 116 NALIKLDHIQRAFECHEKAAELGGDtDATLRFNLATSLEAIGQVQAAVAQYEAVLKLDPlcssahinlalalQD 189
                  6789999***************9999******************************999887655555555555 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 1.3
    PF13371.1  48 AaedLeaflelcpdapdae 66 
                  A++dL+a  ++++ a + e
  MMETSP0890-20130614|33802_1 186 ALQDLDASTQKDRIAYHLE 204
                  5566655555544333333 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 2.8
    PF13371.1  21 llllaPddpyerRDrG 36 
                   ++l P+d+  +   G
  MMETSP0890-20130614|33802_1 206 AVELIPNDLDAWLNLG 221
                  5566777777776666 PP

  == domain 6    score: 7.0 bits;  conditional E-value: 0.0067
    PF13371.1  28 dpyerRDrGlllaqlgclaaAaedLeafl.....elcpdapdae 66 
                  +p+ +   + +l ql++ +aA+++  + +     ++ p++pd e
  MMETSP0890-20130614|33802_1 253 SPEAYLGKASALSQLNQIQAAIDAAKHSIrlaaaQQHPSHPDEE 296
                  56777778999******************888877777666654 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.6     7e-06    0.0048      18      83 ..      38      99 ..      27     100 .. 0.80
   2 !   11.2   0.1    0.0004      0.28      12      83 ..      97     168 ..      95     169 .. 0.82
   3 ?    5.6   0.3     0.023        16       8      51 ..     237     286 ..     235     308 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 7e-06
                 C-ST-HHHHCHHHHHHHHHH---HHHHHHHHHCTSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2 18 espkdpedaylyalAlclylngeykrAyellrkleldssslgcryllArcllklgkydeAiavLek 83
                 +  + +e+ + +  Al l++ g y +A+  l  +    +s++ ++ l+ +l++lgk +eAi+ +e+
  MMETSP0890-20130614|33802_1 38 LKESHNEARNNL--ALLLMRRGAYVEAVSEL--KCTGLESCENQINLGVALECLGKTEEAIEQYEA 99
                 332222677777..*****************..666677789999****************98886 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.0004
                  HHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC.TSHCH.CBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2  12 aekllaespkdpedaylyalAlclylngeykrAyellrk.lelds.sslgcryllArcllklgkydeAiavLek 83 
                  +e +++++pkd     l +l+++l ++ + +rA+e  +k  el   + ++ r+ lA +l++ g+++ A a +e+
  MMETSP0890-20130614|33802_1  97 YEAAITQNPKD--PRPLTNLGNALIKLDHIQRAFECHEKaAELGGdTDATLRFNLATSLEAIGQVQAAVAQYEA 168
                  57777787754..4556677*****************99*888884557888888*************998875 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.023
                  HHHHHHHHCCC-ST-HHHHCHHHHHHHHHH---HHHHHHHHHC......T CS
    PF12895.2   8 AlflaekllaespkdpedaylyalAlclylngeykrAyellrk......l 51 
                  Al  +ek++++   + + ++++ +A +l ++++ ++A+++ ++       
  MMETSP0890-20130614|33802_1 237 ALDAFEKACKTKEGQFSPEAYLGKASALSQLNQIQAAIDAAKHsirlaaA 286
                  55567888887664446668888999999999999999999778775542 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.6   6.6e+03      25      34 ..      32      41 ..      29      42 .. 0.76
   2 !   10.7   0.1   0.00051      0.35       4      22 ..      45      63 ..      44      68 .. 0.91
   3 !    8.3   0.0    0.0029         2       6      29 ..      78     101 ..      76     102 .. 0.91
   4 ?    6.0   0.0     0.015        10       5      30 ..     111     136 ..     111     137 .. 0.93
   5 !    8.2   0.3    0.0031       2.1       7      30 ..     148     171 ..     143     172 .. 0.91
   6 ?   -0.1   0.0       1.3   8.9e+02       4      15 ..     179     190 ..     177     191 .. 0.80
   7 ?   -0.1   0.0       1.2   8.4e+02       9      25 ..     261     277 ..     260     294 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 9.6
    PF13374.1 25 eeealairrr 34
                 ++e+la+++ 
  MMETSP0890-20130614|33802_1 32 YRECLALKES 41
                 7899999876 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00051
    PF13374.1  4 alnnLAlalrargryeeAl 22
                 a+nnLAl+l++rg y eA+
  MMETSP0890-20130614|33802_1 45 ARNNLALLLMRRGAYVEAV 63
                 89***********999985 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0029
    PF13374.1   6 nnLAlalrargryeeAlaleeeal 29 
                   nL++al  +g++eeA + +e+a 
  MMETSP0890-20130614|33802_1  78 INLGVALECLGKTEEAIEQYEAAI 101
                  5*****************999985 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.015
    PF13374.1   5 lnnLAlalrargryeeAlaleeeala 30 
                  l+nL++al +++  ++A + +e+a++
  MMETSP0890-20130614|33802_1 111 LTNLGNALIKLDHIQRAFECHEKAAE 136
                  78*****************9999987 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.0031
    PF13374.1   7 nLAlalrargryeeAlaleeeala 30 
                  nLA  l a g+ ++A+a +e++l 
  MMETSP0890-20130614|33802_1 148 NLATSLEAIGQVQAAVAQYEAVLK 171
                  9*********************96 PP

  == domain 6    score: -0.1 bits;  conditional E-value: 1.3
    PF13374.1   4 alnnLAlalrar 15 
                  a  nLAlal+++
  MMETSP0890-20130614|33802_1 179 AHINLALALQDL 190
                  567******986 PP

  == domain 7    score: -0.1 bits;  conditional E-value: 1.2
    PF13374.1   9 AlalrargryeeAlale 25 
                  A al+++++ ++A + +
  MMETSP0890-20130614|33802_1 261 ASALSQLNQIQAAIDAA 277
                  67899999999997655 PP

>> PF13429.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   8.6e-05     0.059     158     271 ..      23     131 ..       8     137 .. 0.85
   2 !    6.4   0.2    0.0053       3.6     126     190 ..     121     187 ..     113     221 .. 0.75
   3 ?    2.1   0.1      0.11        73     132     178 ..     240     286 ..     224     296 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.6e-05
    PF13429.1 158 qegqkkkAlrllrralalkpassdlraallWlliDlgrraelrealaawkaeaesdsaLwgpfaaayllLgrpkkALeylrkqaksnskdplwllaYADaleaaGradeAwrlR 271
                  + g++ +   ++r+ lalk   +++r++l  ll  +g + e   a++++k    ++ + +  ++ a   Lg++++A e ++    +n+kdp  l     al   +  ++A++  
  MMETSP0890-20130614|33802_1  23 RLGMNGE--SAYRECLALKESHNEARNNLALLLMRRGAYVE---AVSELKCTGLESCENQINLGVALECLGKTEEAIEQYEAAITQNPKDPRPLTNLGNALIKLDHIQRAFECH 131
                  5555544..579**********************9999997...9*****999889999999*****************************99999988888888888887665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0053
    PF13429.1 126 ykrieellasleekeaae..qsalfllaraellrqegqkkkAlrllrralalkpassdlraallWll 190
                  ++ i++ ++  e+ +++    +a+  + +a++l+  gq ++A+++++ +l+l+p  s++  +l  +l
  MMETSP0890-20130614|33802_1 121 LDHIQRAFECHEKAAELGgdTDATLRFNLATSLEAIGQVQAAVAQYEAVLKLDPLCSSAHINLALAL 187
                  56677777776655554444677777889***********************997666665555555 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.11
    PF13429.1 132 llasleekeaaeqsalfllaraellrqegqkkkAlrllrralalkpa 178
                   ++++ ++++ + s+  +l  a++l+q +q ++A+ ++++ ++l+ a
  MMETSP0890-20130614|33802_1 240 AFEKACKTKEGQFSPEAYLGKASALSQLNQIQAAIDAAKHSIRLAAA 286
                  44555555666667777777777777777777777777777776665 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00064      0.44       8      32 ..      82     106 ..      75     107 .. 0.81
   2 !   10.7   0.1   0.00078      0.53       3      31 ..     146     174 ..     144     174 .. 0.91
   3 ?    0.1   0.0       1.9   1.3e+03       2      26 ..     216     244 ..     215     247 .. 0.57
   4 ?    1.4   0.3      0.72   4.9e+02       1      23 [.     255     277 ..     255     279 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00064
                  HHHHHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1   8 lsyyklgdtdeAlealerlikeyPd 32 
                   +++ lg+t+eA+e +e  i++ P+
  MMETSP0890-20130614|33802_1  82 VALECLGKTEEAIEQYEAAITQNPK 106
                  5544368*****************8 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00078
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerlikeyP 31 
                   ++la s+++ g+ ++A++ +e ++k  P
  MMETSP0890-20130614|33802_1 146 RFNLATSLEAIGQVQAAVAQYEAVLKLDP 174
                  59********78*************9876 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 1.9
                  HHHHHHHHHHH.H...HHHHHHHHHHHHH CS
    PF13174.1   2 Alyklalsyyk.l...gdtdeAlealerl 26 
                  A+++l+  +++     +++ +Al+a+e+ 
  MMETSP0890-20130614|33802_1 216 AWLNLGDFRLEsVddnTMSIRALDAFEKA 244
                  66666666665333333444788888775 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.72
                  HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   1 dAlyklalsyyklgdtdeAleal 23 
                  +A++  a ++ +l++ ++A++a 
  MMETSP0890-20130614|33802_1 255 EAYLGKASALSQLNQIQAAIDAA 277
                  6999999*****99*****9985 PP

>> PF12688.2  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.2   8.5e+02      72      97 ..      40      65 ..      13      73 .. 0.71
   2 ?    4.8   0.0     0.035        24      40      71 ..      76     107 ..      67     118 .. 0.84
   3 !   11.3   0.7   0.00034      0.23      19     107 ..     126     211 ..     120     219 .. 0.75
   4 ?    1.5   0.1      0.37   2.5e+02      18      74 ..     235     297 ..     224     312 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.2
    PF12688.2 72 elddalaaflALaLssagrereavai 97
                 e ++  +  lAL L+ +g   eav+ 
  MMETSP0890-20130614|33802_1 40 ESHNEARNNLALLLMRRGAYVEAVSE 65
                 44455566789999999999999986 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.035
    PF12688.2  40 atiqlaSsLRnlGrveeslalleaelaeapgd 71 
                    i l+ +L  lG++ee++   ea+++++p+d
  MMETSP0890-20130614|33802_1  76 NQINLGVALECLGKTEEAIEQYEAAITQNPKD 107
                  56889999999999999999999999988876 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00034
    PF12688.2  19 kAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveeslalleaelaeapgdelddalaaflALaLssag..rereavaivlraladhlp 107
                  +A +  ++A + G  g     +   la sL  +G+v+ ++a  ea l+    d l ++ +  lALaL++++   +++ +a  l++ ++ +p
  MMETSP0890-20130614|33802_1 126 RAFECHEKAAELG--GDTDATLRFNLATSLEAIGQVQAAVAQYEAVLKL---DPLCSSAHINLALALQDLDasTQKDRIAYHLETAVELIP 211
                  5666666666654..55556667889*******************9996...778999999999999876511455667777776666655 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.37
    PF12688.2  18 akAvplYrrAlaaGLagarrrratiqlaSsLRnlGrveesl.......alleaelaeapgdeld 74 
                   +A++ +++A +   +g+  + a++  aS+L  l +++ ++       +l  a+++    de +
  MMETSP0890-20130614|33802_1 235 IRALDAFEKACKT-KEGQFSPEAYLGKASALSQLNQIQAAIdaakhsiRLAAAQQHPSHPDEES 297
                  5677777777654.57777888999999999988887654411111004555555444444444 PP

>> PF03704.12  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.0      0.12        85      47     121 ..      28      99 ..      16     100 .. 0.75
   2 ?    6.9   0.0    0.0095       6.5      72     123 ..      84     135 ..      62     147 .. 0.79
   3 ?    6.3   0.1     0.014       9.7      73     110 ..     154     191 ..     141     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.12
   PF03704.12  47 gpwleaererleelrlealealieadlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrr 121
                  g+ +  e+ +l+e+  ea   l+ + +r g + e+++el++   +    E+ +  l +Al ++G+ +eA+e+Y++
  MMETSP0890-20130614|33802_1  28 GESAYRECLALKESHNEARNNLALLLMRRGAYVEAVSELKCTGLES--CEN-QINLGVALECLGKTEEAIEQYEA 99 
                  5666778888999999999999999999999999999998755443..333.33466788888888889888875 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0095
   PF03704.12  72 dlrlgrheellaelealvalhPlrErlhrqlmrAlyrsGrqaeALevYrrlr 123
                     lg+ ee+++++ea+++++P + r    l  Al +++  + A e+++++ 
  MMETSP0890-20130614|33802_1  84 LECLGKTEEAIEQYEAAITQNPKDPRPLTNLGNALIKLDHIQRAFECHEKAA 135
                  34567999***************************99999999999999874 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.014
   PF03704.12  73 lrlgrheellaelealvalhPlrErlhrqlmrAlyrsG 110
                   ++g+ ++++a++ea ++l+Pl  ++h  l +Al +++
  MMETSP0890-20130614|33802_1 154 EAIGQVQAAVAQYEAVLKLDPLCSSAHINLALALQDLD 191
                  478999**************************998765 PP

>> PF12925.2  E2 domain of amyloid precursor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00036      0.24     113     183 ..      89     157 ..      81     167 .. 0.88
   2 ?    0.8   0.0      0.39   2.7e+02     134     185 ..     158     209 ..     156     216 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00036
                  HHHHHHHHHHSTT-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH CS
    PF12925.2 113 rrraalekylkalqaeppnaekilkalkryiralqkdrqhtlrhfkhvrktdpekaaqiraqvlehLrvid 183
                  + ++a+e+y++a++++p++++ + +  +++i+  + +r  + +  +++++ +++  a+ r+++++ L+ i 
  MMETSP0890-20130614|33802_1  89 KTEEAIEQYEAAITQNPKDPRPLTNLGNALIKLDHIQR--AFECHEKAAELGGDTDATLRFNLATSLEAIG 157
                  6789****************************988765..6888999********************9997 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.39
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH CS
    PF12925.2 134 kilkalkryiralqkdrqhtlrhfkhvrktdpekaaqiraqvlehLrvider 185
                  ++++a+ +y  +l+ d   + +h + + + +  +a++ +++++ hL+++ e 
  MMETSP0890-20130614|33802_1 158 QVQAAVAQYEAVLKLDPLCSSAHINLALALQDLDASTQKDRIAYHLETAVEL 209
                  5788888898999999999999999999999999***********9987665 PP

>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.1   1.5e+03       2      21 ..      44      61 ..      44      66 .. 0.63
   2 ?   -1.5   0.0       5.8     4e+03      25      36 ..      91     102 ..      77     104 .. 0.65
   3 ?    7.3   0.0      0.01         7      23      38 ..     122     138 ..     113     139 .. 0.79
   4 ?   -0.2   0.0       2.3   1.6e+03       2      35 ..     215     245 ..     214     247 .. 0.55

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 2.1
    PF08238.7  2 eAqynLG..lyymylnGlgGvp 21
                 eA +nL+  l     +G  +v+
  MMETSP0890-20130614|33802_1 44 EARNNLAllL---MRRGA-YVE 61
                 68899**422...23664.565 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 5.8
    PF08238.7  25 ekAleWyekAAe 36 
                  e+A+e ye A  
  MMETSP0890-20130614|33802_1  91 EEAIEQYEAAIT 102
                  578888887765 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.01
    PF08238.7  23 d.pekAleWyekAAeqG 38 
                  d  ++A+e  ekAAe+G
  MMETSP0890-20130614|33802_1 122 DhIQRAFECHEKAAELG 138
                  65677**********99 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 2.3
    PF08238.7   2 eAqynLGlyymylnGlgGvpkd..pekAleWyekAA 35 
                  +A  nLG ++  l+     + +    +Al  +ekA+
  MMETSP0890-20130614|33802_1 215 DAWLNLGDFR--LESV---DDNtmSIRALDAFEKAC 245
                  6888888444..3332...11233445777777776 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0045       3.1       8      32 ..      77     101 ..      71     103 .. 0.90
   2 ?   -0.3   0.0       1.3     9e+02       2      14 ..     124     136 ..     122     140 .. 0.60
   3 ?   -0.4   0.0       1.4   9.6e+02      10      29 ..     148     167 ..     141     177 .. 0.84
   4 ?   -0.6   0.1       1.6   1.1e+03      18      32 ..     267     281 ..     236     301 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0045
                  HHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF04212.13   8 likkAveaDeagkyeeAlelYkeAl 32 
                  +i+ +v  +  gk eeA+e Y+ A+
  MMETSP0890-20130614|33802_1  77 QINLGVALECLGKTEEAIEQYEAAI 101
                  68899999**************998 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHH CS
   PF04212.13   2 lskAlelikkAve 14 
                  +++A+e+  kA e
  MMETSP0890-20130614|33802_1 124 IQRAFECHEKAAE 136
                  4556666555555 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.4
                  HHHHHHHHTT-HHHHHHHHH CS
   PF04212.13  10 kkAveaDeagkyeeAlelYk 29 
                  + A+  +  g+ ++A+  Y+
  MMETSP0890-20130614|33802_1 148 NLATSLEAIGQVQAAVAQYE 167
                  66888999999999999996 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 1.6
                  TT-HHHHHHHHHHHH CS
   PF04212.13  18 agkyeeAlelYkeAl 32 
                   ++ ++A+++ k+++
  MMETSP0890-20130614|33802_1 267 LNQIQAAIDAAKHSI 281
                  345555555555555 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.061        42       3      22 ..      45      64 ..      43      66 .. 0.87
   2 ?    5.0   0.0     0.053        36       4      25 ..      77      98 ..      77      99 .. 0.87
   3 ?   -1.1   0.0       5.1   3.5e+03       1      17 [.     108     124 ..     108     127 .. 0.77
   4 ?    1.9   0.3      0.55   3.8e+02       3      25 ..     145     167 ..     143     168 .. 0.88
   5 ?    3.7   0.0      0.14        97       2      14 ..     178     190 ..     177     191 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.061
                 HH---HHHHHH-------HH CS
    PF07721.9  3 allaLArallalGdldeAra 22
                 a+ +LA +l ++G + eA  
  MMETSP0890-20130614|33802_1 45 ARNNLALLLMRRGAYVEAVS 64
                 889**********9999975 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.053
                 H---HHHHHH-------HHHHH CS
    PF07721.9  4 llaLArallalGdldeAralle 25
                 +++L+ al  lG  +eA +  e
  MMETSP0890-20130614|33802_1 77 QINLGVALECLGKTEEAIEQYE 98
                 589**************77665 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 5.1
                  HHHH---HHHHHH---- CS
    PF07721.9   1 arallaLArallalGdl 17 
                  +r l +L+ al  l + 
  MMETSP0890-20130614|33802_1 108 PRPLTNLGNALIKLDHI 124
                  688999****9887765 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.55
                  HH---HHHHHH-------HHHHH CS
    PF07721.9   3 allaLArallalGdldeAralle 25 
                  ++++LA  l a G+  +A a  e
  MMETSP0890-20130614|33802_1 145 LRFNLATSLEAIGQVQAAVAQYE 167
                  6899**************99887 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.14
                  HHH---HHHHHH- CS
    PF07721.9   2 rallaLArallal 14 
                   a+++LA al++l
  MMETSP0890-20130614|33802_1 178 SAHINLALALQDL 190
                  59********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.81u 0.39s 00:00:01.20 Elapsed: 00:00:00.98
# Mc/sec: 787.37
//
Query:       MMETSP0890-20130614|33807_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   25.0   0.2    3.9e-05   23.7   0.1    1.7  1  PF13615.1 Putative alanine racemase


Domain annotation for each model (and alignments):
>> PF13615.1  Putative alanine racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   2.8e-09   3.9e-05       3      74 ..     157     227 ..     155     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.8e-09
    PF13615.1   3 yLan.alsgdelaAeylLlh.llSrvesr..tdslplgklslnltgcsseslsklaerlesvleqllpavatiplt 74 
                  +La+ +l+gd+ aAeyl l+ ++S++ ++  +   +lg lsl+l  ++ +      ++l+  l++l+p++  i+ +
  MMETSP0890-20130614|33807_1 157 WLAQtCLGGDAHAAEYLFLAmCISKRFATiaNTERALGLLSLELITPTDCA-----TKLSLALSELVPCCRLIKSS 227
                  66553899*********8872568855543377889********9888777.....9***********99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.82
# Mc/sec: 1309.23
//
Query:       MMETSP0890-20130614|33814_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0077   15.2   0.1     0.0079   15.2   0.0    1.0  1  PF01593.19 Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.028   14.1   0.0      0.031   13.9   0.0    1.0  1  PF13454.1  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06    0.0079     220     267 ..      24      72 ..       9      73 .] 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
                  CCEGTTEETTEEEEEEEEETSCEEEEEECSS..EEEESEEEE-S-HHHCC CS
   PF01593.19 220 gldggvvrlnkrVksitkegdgvtvttedgr..tykaDaVvvTlplgvlk 267
                   + +++v+ln+rV +++ ++dg + +  d++    ++D+V+ ++p ++++
  MMETSP0890-20130614|33814_1  24 IE-DTTVHLNTRVLKVDVTADGSKRILHDQSdtPETFDRVIFACPCNAVS 72 
                  33.369**************87777777777776778********88776 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.6e-06     0.031     101     153 ..      17      66 ..       7      67 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.6e-06
    PF13454.1 101 rwvfeelvarlpegvtvrvhraevvdlepegdgqtvll..adgesleadaVvlAt 153
                  r+vf++l+++        +++++v++++ ++dg   +l  +++++ ++d+V++A+
  MMETSP0890-20130614|33814_1  17 RQVFAKLIEDT-----TVHLNTRVLKVDVTADGSKRILhdQSDTPETFDRVIFAC 66 
                  45555555443.....345699**9999999996544411555778******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.64
# Mc/sec: 273.33
//
Query:       MMETSP0890-20130614|33815_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-34  118.0   0.0    4.3e-34  117.6   0.0    1.1  1  PF01786.12 Alternative oxidase


Domain annotation for each model (and alignments):
>> PF01786.12  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   3.1e-38   4.3e-34      25     200 ..      36     229 ..      17     236 .. 0.95

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 3.1e-38
   PF01786.12  25 vaialvkllrwladllfeerylhraifLetvAgvpgmvgavlrhLrslrnlkrdkgwirtlleeaenermHllvllelt.kptliertlvlllqgvffniffllyllsPrvahrlvgyleeeavvtYtkmledldegklaevpvpeiAlqYWgleeae..................atLrdvilliRaDEakhrd 200
                  v+++l++l   ++d lf++r ++r+ fLe vA++p++    + hL+++  ++r  +  r++ +e +ne +Hll++  l  + ++ +r++++++++v++ +  l++l+sPr+a+++++ le +a  tY ++l +  + +l+ +p p iA+ Y++ ++++                   +L+dv+ +i +DEa+h +
  MMETSP0890-20130614|33815_1  36 VSRYLYDLGCLFLDSLFDQRPIQRFWFLEVVARIPYFSYTSMLHLYESLGWWRAPDLRRVHGAEEWNELHHLLIMEALGgNSQWSDRFFAYHAAIVYYWLINLVFLFSPRIAYQFMELLEAHAGDTYGTFLIEN-KVRLQALPPPSIAKTYYTSDDLYffddfqvsrapgtrrppcDSLYDVFKNIMEDEAEHVK 229
                  5666777777899******************************************************************9**************************************************9875.47899****************99***********************************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 857.95
//
Query:       MMETSP0890-20130614|33816_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.084   12.4   0.1       0.11   12.1   0.0    1.2  1  PF01424.17 R3H domain


Domain annotation for each model (and alignments):
>> PF01424.17  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-06      0.11      29      54 ..       2      29 ..       1      30 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.7e-06
                 HHHHHH--..-EEEEE---..-EEEEE- CS
   PF01424.17 29 Helaeefg..leseSeGegpkRrvvitk 54
                 H  +e +g  ++s+S G  ++Rr+ i++
  MMETSP0890-20130614|33816_1  2 HAWVETLGpsVQSMSSGHDNERRLTISH 29
                 6678889999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      148  (0.010825); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 235.43
//
Query:       MMETSP0890-20130614|33819_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0036   17.0   2.6        1.1    9.1   0.0    2.9  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   8.1e-05       1.1      14      39 .]      57      82 ..      53      82 .. 0.92
   2 !    7.2   0.1   0.00032       4.4       6      38 ..      94     127 ..      89     128 .. 0.85
   3 ?   -2.0   0.1      0.26   3.6e+03       7      16 ..     135     144 ..     132     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 8.1e-05
                 EEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27 14 VtcvafspdgpllasgSrDgtirlWd 39
                 V+ v  s+dg+ll+ g ++g ++l++
  MMETSP0890-20130614|33819_1 57 VNTVHRSHDGNLLVVGDDNGFVKLFN 82
                 899999*****************986 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00032
                  EEESSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27   6 tlrgHtspVtcvafspd.gpllasgSrDgtirlW 38 
                   + gH++ +   +f  d ++++ +g+rD  + +W
  MMETSP0890-20130614|33819_1  94 RYLGHSAHCIGARFLADdQRVVTTGGRDAALLVW 127
                  678999999999*****888888888**999999 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.26
                  EESSSSSEEE CS
   PF00400.27   7 lrgHtspVtc 16 
                   + H++ V++
  MMETSP0890-20130614|33819_1 135 SKNHSHNVSS 144
                  578*999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.37s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 896.24
//
Query:       MMETSP0890-20130614|33821_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-14   52.3   0.0    4.6e-14   52.0   0.0    1.1  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   3.4e-18   4.6e-14     168     260 .]       2     155 ..       1     155 [. 0.98

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 3.4e-18
                  HHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.............................................................HHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 168 EvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.............................................................eelkdlikkllekdpakRltaeeilkhpwl 260
                  Evll++++y+++vDvWs G+i+ ell+++++f g++e dql+ i  +l+++++ d+p +++                                                               ++   l+++llek+p++R+ta+ +++++w+
  MMETSP0890-20130614|33821_1   2 EVLLGSRDYGRSVDVWSSGCIFGELLSRSVLFAGKDEPDQLRQIFAVLGEPTDDDWPLYTHLAkargfkfessslpdlqrraarmggsdmlrrrfpangfdgvhppissmafvsplthvitalsNTGFALLTRLLEKNPDRRITADAAKRDRWF 155
                  999******************************************************9987779***************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.95
# Mc/sec: 559.99
//
Query:       MMETSP0890-20130614|33822_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   13.6   7.9      0.029   12.8   5.5    1.4  1  PF03148.9  Tektin family
      0.021   13.6   1.8       0.03   13.1   1.3    1.2  1  PF13388.1  Protein of unknown function (DUF4106)
      0.042   13.5   1.8      0.058   13.0   0.5    1.7  2  PF07889.7  Protein of unknown function (DUF1664)
      0.052   13.7   5.4      0.056   13.6   2.5    1.9  2  PF06156.8  Protein of unknown function (DUF972)
      0.054   13.0   2.2      0.093   12.2   1.5    1.5  1  PF12462.3  DNA helicase IV / RNA helicase N terminal
       0.15   11.7   5.1      0.068   12.8   2.0    1.6  2  PF09744.4  JNK_SAPK-associated protein-1
       0.24   11.0   2.6       0.44   10.1   0.0    2.2  2  PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
        2.4    6.9  10.8        1.1    8.0   6.0    1.5  2  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        3.2    7.2  14.8         16    4.8  10.3    2.1  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF03148.9  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.5   1.9e-05     0.029      15      94 ..      19      98 ..       6     113 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-05
    PF03148.9 15 qrdkaerlreesrrlvneteaktkktqadvtkkLeeRikdiefwkseLereleelkeEieaLeeekrrlekalealelpl 94
                  +++a + r+ +++ ++++ a ++ + ++ ++ Le +++++ + k++Le+el++ k++ + Le+  + l+ alea   ++
  MMETSP0890-20130614|33822_1 19 ATAAAADARRLATASARDAAALAEYEARQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEADANSLRSALEARDHSV 98
                 44556666777777777888888888888888888888888888888888888888888888888888888888766554 PP

>> PF13388.1  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.3     2e-05      0.03      90     149 ..      24      85 ..       2      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2e-05
    PF13388.1  90 qnmtkitdaatrqavq.sayda.vratvvesqekelqqtktdlvnaflktksqvghyaadgt 149
                   +  +++ a++r+a   + y+a  r  ++es+  el qtk++l n + ++k+q  h  ad  
  MMETSP0890-20130614|33822_1  24 ADARRLATASARDAAAlAEYEArQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEADAN 85 
                  4556677787887665156888358899******************************9975 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   3.8e-05     0.058      40     114 ..      17      93 ..       6     100 .. 0.79
   2 ?   -1.8   0.0       1.5   2.3e+03      66      66 ..     183     183 ..     158     215 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.8e-05
    PF07889.7  40 nladAvasvtkqlekvs..eavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvveg 114
                   la A a  +++l + s  +a a a  +  qr + l++klde  +++k+ ++e+++ + + ++++ d +sl++++e+
  MMETSP0890-20130614|33822_1  17 ALATAAAADARRLATASarDAAALAEYEARQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEADANSLRSALEA 93 
                  5566666666666554422556666777889999*************************************999875 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.5
    PF07889.7  66 L 66 
                  L
  MMETSP0890-20130614|33822_1 183 L 183
                  2 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.5   3.7e-05     0.056      11      69 ..      50     108 ..      41     126 .. 0.77
   2 ?   -1.4   0.0       1.7   2.5e+03      17      32 ..     169     184 ..     160     214 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.7e-05
    PF06156.8  11 seleeqleelleeleelkkelkelleenaelkleneklrerleelee.....eekkkekkkkkk 69 
                  + le++l+el+++ ++l++el++   +n++l+ + ++lr+ le  ++     +      ++k +
  MMETSP0890-20130614|33822_1  50 ELLESKLDELIQTKKQLENELAQSKAQNNHLEADANSLRSALEARDHsvgyaN-----VDRKRR 108
                  5699***************************************9988555442.....222222 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.7
    PF06156.8  17 leelleeleelkkelk 32 
                  ++++l+el++l+ +l 
  MMETSP0890-20130614|33822_1 169 IQAVLSELRQLRLKLI 184
                  4444444444444333 PP

>> PF12462.3  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.5   6.1e-05     0.093      67     123 ..      26      82 ..      16     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.1e-05
    PF12462.3  67 vvrlhGlpweeaqrFaeelvrawqawseeqleqlaevlkqalqaiqrleaqkrwlth 123
                    rl  ++ ++a+ +ae+  r++q++ e +l+ l ++ kq+++++ + +aq++ l +
  MMETSP0890-20130614|33822_1  26 ARRLATASARDAAALAEYEARQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEA 82 
                  678999999*******************************************99987 PP

>> PF09744.4  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.0   4.5e-05     0.068      82     135 ..      40      93 ..       2     100 .. 0.75
   2 ?   -3.7   0.0       5.4   8.2e+03     131     144 ..     171     184 ..     164     191 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.5e-05
    PF09744.4  82 elEdeleqekkelekkieeleeevrqlelkaknlsdkvsrLeeretelkkeyes 135
                   +E e++q +  le+k++el ++ +qle++   ++ +   Le  +++l++ +e+
  MMETSP0890-20130614|33822_1  40 LAEYEARQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEADANSLRSALEA 93 
                  357788888888888999999999999999999999999999988888887665 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5.4
    PF09744.4 131 keyeslheretkll 144
                   ++++l++  +kl+
  MMETSP0890-20130614|33822_1 171 AVLSELRQLRLKLI 184
                  34444444444444 PP

>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.6      0.31   4.7e+02      42      52 ..      64      74 ..      24     130 .. 0.52
   2 ?   10.1   0.0   0.00029      0.44      96     126 ..     148     178 ..     144     185 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.31
    PF05320.7 42 kqsdykvesas 52
                 kq + ++++ +
  MMETSP0890-20130614|33822_1 64 KQLENELAQSK 74
                 22222211111 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00029
    PF05320.7  96 LqrGrlPLvsdlsdetlkdnilkvvikeiee 126
                  L r  lP+ s++s +tl+++ ++ v++e+++
  MMETSP0890-20130614|33822_1 148 LARANLPITSNASSDTLNKDTIQAVLSELRQ 178
                  899*************************986 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.0    0.0007       1.1      54     136 ..      38     126 ..       4     142 .. 0.58
   2 ?   -2.8   0.0       1.3     2e+03     190     206 ..     163     179 ..     144     191 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0007
    PF10186.4  54 kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdlea......saqlekrraeqlaklqeeikrtkskln 136
                  ++la  + + +++  + +++++ ++ +ql++e+ q +++ ++l+++ + +rs lea      +a++  +r +  +++++++k   s ++
  MMETSP0890-20130614|33822_1  38 AALAEYEARQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEADANSLRSALEArdhsvgYANVDRKRRSSSSSKLDALKLQSSSVA 126
                  44444455556666666666666666666666666666666666666666666663011111344444555555555555555555444 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.3
    PF10186.4 190 slpaetisasLtyiaqL 206
                  +l+++ti+a L+   qL
  MMETSP0890-20130614|33822_1 163 TLNKDTIQAVLSELRQL 179
                  45555555555554443 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  10.3     0.011        16      78     157 ..      44     122 ..      11     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
    PF04156.9  78 rlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlk 157
                  ++ +++  +es l+el +   qle++la ++++++ le d  +l+++l++   ++  ++ + k+ +++ ++l  +++ + 
  MMETSP0890-20130614|33822_1  44 EARQRQELLESKLDELIQTKKQLENELAQSKAQNNHLEADANSLRSALEARDHSVGYANVDRKRRSSSSSKLD-ALKLQS 122
                  3345566677777777777777777777777777777777777777777777777777777777777777776.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1302  (0.0952311); expected 273.4 (0.02)
Passed bias filter:                      598  (0.043739); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 656.78
//
Query:       MMETSP0890-20130614|33824_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-07   29.2   0.8       0.66    9.7   0.0    5.5  7  PF00514.18 Armadillo/beta-catenin-like repeat
    4.8e-06   26.6   0.4       0.11   12.6   0.1    3.4  3  PF13646.1  HEAT repeats
     0.0014   18.9   0.7        1.3    9.5   0.1    3.5  3  PF13513.1  HEAT-like repeat
  ------ inclusion threshold ------
      0.082   11.0  10.9       0.86    7.6   5.5    2.5  2  PF10508.4  Proteasome non-ATPase 26S subunit
       0.22   11.6   5.2         48    4.3   0.0    4.5  5  PF02985.17 HEAT repeat
       0.89    9.2   4.9         18    5.0   0.8    3.1  3  PF09759.4  Spinocerebellar ataxia type 10 protein domain
        4.6    6.8   7.4        1.3    8.5   0.5    2.7  3  PF11841.3  Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.42   8.2e+02       3      22 ..      17      38 ..      16      44 .. 0.84
   2 !    9.7   0.0   0.00034      0.66      15      40 ..      68      94 ..      55      95 .. 0.91
   3 ?    3.4   0.0     0.032        63      15      40 ..     107     133 ..     106     134 .. 0.79
   4 ?   -0.8   0.0      0.72   1.4e+03      17      40 ..     152     175 ..     148     176 .. 0.83
   5 ?   -2.7   0.0       2.8   5.5e+03      15      25 ..     214     224 ..     205     226 .. 0.69
   6 !    8.0   0.0    0.0012       2.4      13      41 .]     240     269 ..     234     269 .. 0.89
   7 ?   -2.1   0.0       1.8   3.6e+03       8      17 ..     277     286 ..     272     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.42
                 HHHHHHH..HCHHHHHHHHHHC CS
   PF00514.18  3 enkqavi..eaGavppLvqLLk 22
                 e+++++i  + G + +L++ L 
  MMETSP0890-20130614|33824_1 17 EQIKELIleQDGLLNKLINHLE 38
                 67777888999*******9986 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00034
                 HHHHHHHC.-SSHHHHHHHHHHHHHHH CS
   PF00514.18 15 ppLvqLLk.sgdeevqeeAawALsNLa 40
                 ++L+++++ + d   + +A+ AL NLa
  MMETSP0890-20130614|33824_1 68 QILINFIQqNYDAAHKVQACVALANLA 94
                 689999999999**************9 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.032
                  HHHHHHHC.-SSHHHHHHHHHHHHHHH CS
   PF00514.18  15 ppLvqLLk.sgdeevqeeAawALsNLa 40 
                  +p +  +k ++d++v+e+++++L   a
  MMETSP0890-20130614|33824_1 107 DPIITEIKlTKDDHVKEACLRVLARVA 133
                  56666677789***********98665 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.72
                  HHHHHC-SSHHHHHHHHHHHHHHH CS
   PF00514.18  17 LvqLLksgdeevqeeAawALsNLa 40 
                  Lv  L++++++++   a++L+ +a
  MMETSP0890-20130614|33824_1 152 LVLQLDDQNDKIVMITAAVLGQMA 175
                  788899999999999999998776 PP

  == domain 5    score: -2.7 bits;  conditional E-value: 2.8
                  HHHHHHHC-SS CS
   PF00514.18  15 ppLvqLLksgd 25 
                    L +L +++d
  MMETSP0890-20130614|33824_1 214 ALLANLAYHND 224
                  45666666666 PP

  == domain 6    score: 8.0 bits;  conditional E-value: 0.0012
                  HHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  13 avppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  ++++L+q     + +++++ Aa +L++ ++
  MMETSP0890-20130614|33824_1 240 IIQALIQVVImADTQDIRRMAAVTLGHCCR 269
                  78888888889999*************996 PP

  == domain 7    score: -2.1 bits;  conditional E-value: 1.8
                  HHHCHHHHHH CS
   PF00514.18   8 vieaGavppL 17 
                  + ++G++p++
  MMETSP0890-20130614|33824_1 277 IYHHGGLPAF 286
                  6789****96 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0003      0.58      29      87 ..      63     129 ..       8     130 .. 0.72
   2 !   12.6   0.1   5.6e-05      0.11       3      61 ..     108     177 ..     106     187 .. 0.76
   3 !    5.7   0.0    0.0083        16      20      58 ..     212     267 ..     196     292 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0003
    PF13646.1  29 seealpaLlelL.kdsdpevRraAaeaLgklg....dpe...alpaLlklldddedavvreaaaeaL 87 
                    e+ ++L+ ++ +++d++ + +A+ aL++l+    d++    +++++  ++ ++d++v+ea+++ L
  MMETSP0890-20130614|33824_1  63 KTEIFQILINFIqQNYDAAHKVQACVALANLAfrhnDNRlkiDIDPIITEIKLTKDDHVKEACLRVL 129
                  2377999*****6699**************96554333333368888888999999999***99887 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 5.6e-05
    PF13646.1   3 aLlaaLekdpdpevraaaieaLgqlgse.ea..........lpaLlelLkdsdpevRraAaeaLgklgdp 61 
                  +++ ++  ++d++v++a +++L++ +   ++          l+ L+  L+d++ ++ +  a +Lg+++++
  MMETSP0890-20130614|33824_1 108 PIITEIKLTKDDHVKEACLRVLARVARNsQIsakiaannafLEYLVLQLDDQNDKIVMITAAVLGQMATD 177
                  6667775589*************65433222344555555699999999*****************9864 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0083
    PF13646.1  20 aieaLg.......qlgseea..............lpaLlelL.kdsdpevRraAaeaLgkl 58 
                  +i +L+       +     +              ++aL+++    +  ++Rr+Aa  Lg +
  MMETSP0890-20130614|33824_1 212 TIALLAnlayhndE-----LryaivghdleqdpiIQALIQVViMADTQDIRRMAAVTLGHC 267
                  55555533222220.....233333333333333888888775777789999999999965 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.41     8e+02      27      55 .]      64      93 ..      54      93 .. 0.73
   2 !    9.5   0.1   0.00069       1.3       3      55 .]     121     174 ..     117     174 .. 0.88
   3 ?    4.7   0.0     0.021        42      21      54 ..     236     266 ..     214     267 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.41
    PF13513.1 27 pellpaLlelLeddddeV.ReaAawALgrl 55
                 +e+ + L++ ++ + d   + +A+ AL++l
  MMETSP0890-20130614|33824_1 64 TEIFQILINFIQQNYDAAhKVQACVALANL 93
                 677777888886666644588999999986 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00069
    PF13513.1   3 vRraAawaLGrlaggeprllep.avpellpaLlelLeddddeVReaAawALgrl 55 
                  v++a++++L+r+a + +  ++  a+ + l++L+  L d +d++  ++a  Lg++
  MMETSP0890-20130614|33824_1 121 VKEACLRVLARVARNSQISAKIaANNAFLEYLVLQLDDQNDKIVMITAAVLGQM 174
                  89*********997777776669********************99999999975 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.021
    PF13513.1  21 llepavpellpaLlelL.eddddeVReaAawALgr 54 
                   +      +++aL++   + d  ++R+ Aa +Lg+
  MMETSP0890-20130614|33824_1 236 EQD----PIIQALIQVViMADTQDIRRMAAVTLGH 266
                  444....4555555333355999*********996 PP

>> PF10508.4  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.5   0.00044      0.86      36     152 ..      65     180 ..      29     189 .. 0.79
   2 ?    2.0   0.0     0.022        42      77     110 ..     240     273 ..     226     283 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00044
    PF10508.4  36 ealsesilfdclntn..kreqvtlcveiLkrllktlalddlienlqevlqeglkhatpavralvlkelkriveekegalellkeeellslildclrdedlsvaeeainlLkklskseag 152
                  e +  +il++ +++n     +v+ cv  L +l      + l  ++ +++ e    +++ v++ +l+ l+r+ ++++  ++++ ++ +l +++  l d++ ++      +L +++   ++
  MMETSP0890-20130614|33824_1  65 EIF--QILINFIQQNydAAHKVQACV-ALANLAFRHNDNRLKIDIDPIITEIKLTKDDHVKEACLRVLARVARNSQISAKIAANNAFLEYLVLQLDDQNDKIVMITAAVLGQMATDSEE 180
                  333..558888888866777888888.677777777888889999999999999**********************************************9999999999998876655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.022
    PF10508.4  77 nlqevlqeglkhatpavralvlkelkriveekeg 110
                   +q+++q+ + ++t+++r++++ +l+ + ++++ 
  MMETSP0890-20130614|33824_1 240 IIQALIQVVIMADTQDIRRMAAVTLGHCCRTEQI 273
                  468899*******************999998765 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.9   5.6e+03      18      28 ..      84      94 ..      68      95 .. 0.70
   2 ?    3.1   0.0     0.057   1.1e+02      13      29 ..     118     134 ..     117     136 .. 0.87
   3 ?    4.3   0.0     0.025        48       2      29 ..     149     176 ..     148     178 .. 0.88
   4 ?   -2.3   0.0         3   5.9e+03       5      20 ..     215     230 ..     214     231 .. 0.80
   5 ?    3.2   0.0     0.054   1.1e+02      12      29 ..     252     269 ..     239     270 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.9
                 HHHHHHHHHHH CS
   PF02985.17 18 eaAaeaLgala 28
                  +A+ aL++la
  MMETSP0890-20130614|33824_1 84 VQACVALANLA 94
                 56777777765 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.057
                  SHHHHHHHHHHHHHHHH CS
   PF02985.17  13 speVReaAaeaLgalae 29 
                  + +V+ea+++ L+++a+
  MMETSP0890-20130614|33824_1 118 DDHVKEACLRVLARVAR 134
                  789**********9987 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.025
                  HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalae 29 
                  l +l+  l D++ ++ + +a  Lg++a 
  MMETSP0890-20130614|33824_1 149 LEYLVLQLDDQNDKIVMITAAVLGQMAT 176
                  667888899****************985 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 3
                  HHHHHTSSSHHHHHHH CS
   PF02985.17   5 llkllnDpspeVReaA 20 
                  ll +l   + e R+a 
  MMETSP0890-20130614|33824_1 215 LLANLAYHNDELRYAI 230
                  7888888999999986 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.054
                  SSHHHHHHHHHHHHHHHH CS
   PF02985.17  12 pspeVReaAaeaLgalae 29 
                  ++ ++R++Aa +Lg  ++
  MMETSP0890-20130614|33824_1 252 DTQDIRRMAAVTLGHCCR 269
                  46699*********9885 PP

>> PF09759.4  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   6.2e+03      16      30 ..      15      29 ..       5      36 .. 0.69
   2 ?    5.0   0.8    0.0091        18       8      89 ..      44     128 ..      40     141 .. 0.85
   3 ?    4.3   0.0     0.015        29       3      28 ..     209     234 ..     207     246 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.2
    PF09759.4 16 knkevqdkvreldgl 30
                 k +++++ + e+dgl
  MMETSP0890-20130614|33824_1 15 KFEQIKELILEQDGL 29
                 567888888888884 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0091
    PF09759.4   8 rlianltyknkevqdkvreldglaliLsntriDdenPflkEwailairnLlennkenqelia...eLeakgvaesdllkeaglev 89 
                  r i  l+ +++++ + + + + ++ iL n    + ++  k +a +a+ nL    + n+ +i     +++++++++d +kea l+v
  MMETSP0890-20130614|33824_1  44 RAITILVTNSVKNRSLIGKKTEIFQILINFIQQNYDAAHKVQACVALANLAFRHNDNRLKIDidpIITEIKLTKDDHVKEACLRV 128
                  678899999************************************************9999633347777778888888877766 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.015
    PF09759.4   3 krelvrlianltyknkevqdkvreld 28 
                  +   ++l+anl+y+n e   +++ +d
  MMETSP0890-20130614|33824_1 209 RFMTIALLANLAYHNDELRYAIVGHD 234
                  66789************998888765 PP

>> PF11841.3  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.12   2.3e+02      85     137 ..      47     101 ..      38     112 .. 0.68
   2 ?    8.5   0.5   0.00067       1.3      73     139 ..     118     184 ..     106     199 .. 0.82
   3 ?   -2.0   0.0       1.2   2.3e+03      99     121 ..     236     254 ..     210     277 .. 0.56

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.12
    PF11841.3  85 esivlnSsklyqlveeeitlesll.kllqe.snqeiqtnaiallnalflkaddek 137
                    +v nS k  +l+ +++ + ++l + +q+  +  ++++a   l  l  + +d++
  MMETSP0890-20130614|33824_1  47 TILVTNSVKNRSLIGKKTEIFQILiNFIQQnYDAAHKVQACVALANLAFRHNDNR 101
                  5568888888999999888766651555554556677777666666666666665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00067
    PF11841.3  73 dksvlqrslailesivlnSsklyqlveeeitlesllkllqesnqeiqtnaiallnalflkaddekrk 139
                  d  v + +l++l  +  nS+  ++  +++  le l+  l ++n++i + + a+l  +   +++   k
  MMETSP0890-20130614|33824_1 118 DDHVKEACLRVLARVARNSQISAKIAANNAFLEYLVLQLDDQNDKIVMITAAVLGQMATDSEEISMK 184
                  78899**************98666667788899*******************999999888887766 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.2
    PF11841.3  99 eeeitlesllkllqesnqeiqtn 121
                  e++++++ l++++        t+
  MMETSP0890-20130614|33824_1 236 EQDPIIQALIQVV----IMADTQ 254
                  3333344333333....333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:01.21
# Mc/sec: 629.79
//
Query:       MMETSP0890-20130614|33830_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 218.49
//
Query:       MMETSP0890-20130614|33839_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.3   0.3        2.5    7.6   0.0    2.2  2  PF11427.3 Tc3 transposase


Domain annotation for each model (and alignments):
>> PF11427.3  Tc3 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00018       2.5      39      49 ..       3      13 ..       1      14 [. 0.88
   2 ?    4.3   0.0     0.002        27      35      42 ..      37      44 ..      28      47 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00018
                 HHHH-STT--- CS
    PF11427.3 39 ryLKdPvkYGa 49
                 +yLKdP++ Ga
  MMETSP0890-20130614|33839_1  3 KYLKDPSQPGA 13
                 8******9887 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.002
                 HHHHHHHH CS
    PF11427.3 35 nCIrryLK 42
                  CI+r+L+
  MMETSP0890-20130614|33839_1 37 RCIKRFLR 44
                 6*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        93  (0.00680222); expected 273.4 (0.02)
Passed bias filter:                       92  (0.00672908); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 214.85
//
Query:       MMETSP0890-20130614|33844_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.70
# Mc/sec: 759.99
//
Query:       MMETSP0890-20130614|33840_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-22   79.5   0.4    4.2e-22   79.0   0.3    1.1  1  PF12697.2  Alpha/beta hydrolase family
    7.6e-14   51.5   0.0    1.9e-13   50.2   0.0    1.7  1  PF12695.2  Alpha/beta hydrolase family
    1.9e-07   30.7   0.0     0.0011   18.4   0.0    2.3  2  PF00561.15 alpha/beta hydrolase fold
    4.5e-07   29.5   0.0    8.6e-07   28.6   0.0    1.4  1  PF08386.5  TAP-like protein
    7.3e-05   22.4   0.0    0.00014   21.5   0.0    1.4  1  PF12146.3  Putative lysophospholipase
  ------ inclusion threshold ------
      0.028   12.7   0.0       0.04   12.2   0.0    1.1  1  PF10142.4  PhoPQ-activated pathogenicity-related protein


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.3   1.8e-25   4.2e-22       4     226 ..      43     283 ..      40     285 .. 0.73

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.8e-25
                  ------------HHHHHHT..TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT...........---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH.........--GGGG....GG.......------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE---SSSS-...-HHHHH CS
    PF12697.2   4 lHGlggsaeswrplaeaLa..agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas...........alrpagpsllrrllagraaalrdlaarafarlfdgdelealvra.........daaalaellraa.......lldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvlpgagHllfleapdeva 226
                   HG+g++  s+  la+ L   ++  ++a D pG+G+S  +   + d  + + + +++l d+l+  +v+ +GHS+G+++a++aa +r    + l+li+p+++  +               ++  s + r++ +ra    ++++ ++ +++ +++  + ++          + ++l  +l+ +       + + ++rea++rl   vl+i+g++D+v+++++ r l  alp+a ++++ +agH+ +++ p++v 
  MMETSP0890-20130614|33840_1  43 SHGFGANCLSFSALASCLNqtNDPSILAHDHPGFGLSVCDF--N-DGSALDGSIAIELTDSLD--QVIYLGHSFGALAATEAALYRN---APLILIAPAISVRRRrqnsfllrimrI-VAPLLSSTTRFILRRAVHSSGFWEIGLSAAWGDKTA-NTTAFyalpsrcegWDRRLFSFLKNRlysdepaDDQILIREAAKRL-PGVLLIHGTQDPVLTVDNSRLLFCALPQANLIEVNNAGHNAHEQFPHAVT 283
                  6*****************64779**************9976..3.445678899999999998..9*****************9977...579*******77665666665555531.212223333333344444444444444444432222.1111123344455577777777777799999755555556666655.55*********************************************996 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   8.5e-17   1.9e-13       4     142 .]      42     273 ..      39     273 .. 0.73

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 8.5e-17
    PF12695.2   4 lvhGaggdssayeplaealakr.gfavvavdlpghgas....egaaaakrvl.aadlldleriilvGhSlGGgvalelag..............................................rddrvkglvllapfpdgedlakltl.................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                  ++hG+g++  +++ la  l +    +++a d+pg g s    ++ +a++  +  +  + l+++i +GhS+G+ +a+e+a                                                                                                                                          vllihGt+D v+++++++ l+ alp+ a l+++ +a+H+
  MMETSP0890-20130614|33840_1  42 CSHGFGANCLSFSALASCLNQTnDPSILAHDHPGFGLSvcdfNDGSALDGSIaIELTDSLDQVIYLGHSFGALAATEAALyrnapliliapaisvrrrrqnsfllrimrivapllssttrfilrraV-----------------------HssgfweiglsaawgdktanttafyalpsrcegwdrrlfsflknrlysdepaddqilireaakrlpGVLLIHGTQDPVLTVDNSRLLFCALPQ-ANLIEVNNAGHN 273
                  57*******************988999999*******996665555555555324444999****************99966666666666666666666666666666655555555444444440.......................03334444444444444444455666666667777777777777777777777777999999***99************************95.89*********7 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00017      0.39      43      64 ..     101     122 ..      99     182 .. 0.92
   2 !   18.4   0.0   4.7e-07    0.0011     178     228 ..     236     286 ..     227     288 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00017
                  SSSEEEEE-B---HHHHHHHHH CS
   PF00561.15  43 lkkltlvGhSmGGmialayaae 64 
                  l++++++GhS+G++ a+++a+ 
  MMETSP0890-20130614|33840_1 101 LDQVIYLGHSFGALAATEAALY 122
                  799**************99975 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 4.7e-07
                  EEEEECCTTSCCHHCHHHHHHHCSTTEEEEEETTHHCSHHHHSCHHHHHHH CS
   PF00561.15 178 tlvisgtdDplvpykaseklaelipksqlvvidgpgHlafldkpdeinkli 228
                  +l+i+gt+Dp+ ++++s+ l  ++p+++l++++++gH a+++ p ++++ i
  MMETSP0890-20130614|33840_1 236 VLLIHGTQDPVLTVDNSRLLFCALPQANLIEVNNAGHNAHEQFPHAVTNSI 286
                  79****************************************999998776 PP

>> PF08386.5  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.6e-07       9      96 ..     193     295 ..     184     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 3.8e-10
    PF08386.5   9 aeallsCagw..............pvspqrprdelkakga.ppvLlvqnelDPatpyegakklaralggavlvtvegeGHgalaagnkCvdkavdaYLltGel 96 
                  ++ +  C+gw              + + +++    +a++  p vLl++++ DP+    + + l  al++a l+ v+++GH a  +   +v + ++++L++ +l
  MMETSP0890-20130614|33840_1 193 YALPSRCEGWdrrlfsflknrlysDEPADDQILIREAAKRlPGVLLIHGTQDPVLTVDNSRLLFCALPQANLIEVNNAGHNAHEQFPHAVTNSIRSFLAEHHL 295
                  44444599999999999999888855555555555554444******************************************9999***********98665 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.1e-08   0.00014       8      58 ..      30      80 ..      24     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.1e-08
    PF12146.3  8 rwlpeeppkaavvlvhglaEhsgrYqelaedLaa.qGyavyayDhrGhGkse 58
                 ++++ + + +++ ++hg++  +  ++ la  L++ ++ +++a+Dh G+G+s 
  MMETSP0890-20130614|33840_1 30 YVTQRN-AARVLHCSHGFGANCLSFSALASCLNQtNDPSILAHDHPGFGLSV 80
                 455555.599***********************9889*************95 PP

>> PF10142.4  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.04     266     319 ..     237     292 ..     231     313 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
    PF10142.4 266 yvinasnDeffvpdsanlyfseLkgekalryvpNasHslvs...kkvleslvaflkr 319
                  ++i +++D+  ++d+++l f +L+  +    v Na+H+  +   ++v +s+++fl+ 
  MMETSP0890-20130614|33840_1 237 LLIHGTQDPVLTVDNSRLLFCALPQANL-IEVNNAGHNAHEqfpHAVTNSIRSFLAE 292
                  789*********************8765.5577****99987878899999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 1015.60
//
Query:       MMETSP0890-20130614|33848_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-10   38.3   0.0    1.2e-09   37.9   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   8.5e-14   1.2e-09      44      94 .]       1      50 [.       1      50 [. 0.96

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 8.5e-14
                 S-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23 44 vikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94
                 vi gl+ g+++m+ Ge+  ++i   +aYg kg+  + +ppna+l+f+vell
  MMETSP0890-20130614|33848_1  1 VILGLDRGVLQMSLGERSHIRISALYAYGIKGA-LPIVPPNADLIFDVELL 50
                 789******************************.669************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.84
# Mc/sec: 251.05
//
Query:       MMETSP0890-20130614|33845_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-06   26.3   0.0      3e-06   26.3   0.0    3.6  3  PF05029.8 Timeless protein C terminal region


Domain annotation for each model (and alignments):
>> PF05029.8  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.2   1.2    0.0087   1.2e+02     380     416 ..     421     455 ..     387     467 .. 0.68
   2 !   26.3   0.0   2.2e-10     3e-06      10      69 ..     528     590 ..     524     610 .. 0.82
   3 ?  -11.9  28.9         1   1.4e+04     381     565 ..     628     872 ..     618     876 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.0087
    PF05029.8 380 Laeeeeeredelkddedgeeadeseeeedllekkarq 416
                  L +  ee+e+e +dd + e++++s ++  l e+k+r+
  MMETSP0890-20130614|33845_1 421 LDQ--EEEEEEEADDIQKEKTSSSINKSLLEEAKSRR 455
                  222..44455667777777777777777777776664 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 2.2e-10
    PF05029.8  10 emaalLFqlsllrlFqrilsepkavas...keleelvkqlvrkllkkaevnpklfvELLFsKn 69 
                   m++lL+q+  lr F  ++ +++  +    + l  l+++ +r++ + a++np+l+vE LFs  
  MMETSP0890-20130614|33845_1 528 TMEPLLYQVRFLRAFAGLIADKQRRKFpslRPLISLATDTLRHFDAHAKSNPLLYVEALFSHA 590
                  69*****************999888884456666777***********************974 PP

  == domain 3    score: -11.9 bits;  conditional E-value: 1
    PF05029.8 381 aeeeeeredelkddedgeead.es..eeeedllekkarqrKeglasqeeekldeeelkaaPkkkdk.............................................................dilfeelrakkkrkiklgtnseeEeddialdeneedsrassgEledndqdskdaaeaeddleiddnk.alqrarekdeissdrdnaddgalprkkkdkrera........eakvdlePakRRrLkvveddd 565
                  +++eee+e+ l  +e +ee d +     ++d+  k+a++rK+ +  +         + aa  +                                                                     e ++k+++k   ++ s++ +   ++d+        + + ed++ +skd+++ +++   d+++ + q+  e + +s + + +dd +  r+k+ + ++         ea  +++P +RRrL+   +d 
  MMETSP0890-20130614|33845_1 628 SNNEEEKEEILCGGESDEELDfDTamKWDTDA-LKRAKKRKKEKSKK-A------RWTAAEDAALSllladayeddqdrdsidyvrlsklavllphhqerkalkrrlgilekaasdlegatghisdkLRSLAEVKKKNAKKNYRSSSSAKKRRKGTMDD-----LFIADDDEDEEVKSKDSDDEDQEDDDDEDEnPQQQPVERPILSNNDEDDDDDEDDRWKQPSFFKKraalaaveEATSQEKPSQRRRLQRATSDT 872
                  56778888888888888886632233222333.33455555332222.2......22222222111233333444445566777777788888888888888888889999999999999999984422345666677777777888888888889999.....44455566666667777666555555444404444445555555444445556666666554433556789988888899*******9655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1070  (0.0782621); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:01.42
# Mc/sec: 1525.57
//
Query:       MMETSP0890-20130614|33852_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-14   52.0   0.1    8.2e-14   51.1   0.0    1.4  1  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase


Domain annotation for each model (and alignments):
>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0     6e-18   8.2e-14       6     106 ..     419     528 ..     414     533 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 6e-18
                  HHHHHHHHHHHHHHHHHHHSEEEEEEEEEC.....TCEEEEEEE-----THHHHHHHCSTTTCCSC..SSGGGTT----THHHHHHCCEEEEEEEEECTC.......T-CEEEEE CS
   PF02518.21   6 lrqivselvdNavkateesgeievrvkree.....gelvieVeDnGiGipeedlervfepffqtdd..dsrkvggtGlGlsivkklvellggeieveske.......ggGttvtl 106
                  l++iv++l  Na k+t   g+i v++  ++     + lv++VeD+G G+p+ +le++f+    t+d   + +  g+GlGl+++  ++++ +g i+v+          gg t++++
  MMETSP0890-20130614|33852_1 419 LKHIVQNLTANARKFTFN-GSIVVSFLGTKsssngDLLVFSVEDTGTGLPPLVLENIFK----TNDgcITGDNRGSGLGLPSCAVFCKAANGYIKVKETHrqddkgnGGMTKIEF 528
                  89****************.********99999999****************99999888....4455999999**********************99988778777766666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       669  (0.0489321); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.10u 0.40s 00:00:01.50 Elapsed: 00:00:00.93
# Mc/sec: 1875.86
//
Query:       MMETSP0890-20130614|33861_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.5   0.1        1.7    7.8   0.0    2.1  2  PF04310.7 MukB N-terminal


Domain annotation for each model (and alignments):
>> PF04310.7  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0    0.0099   1.4e+02     177     213 ..       2      38 ..       1      44 [. 0.89
   2 ?    7.8   0.0   0.00012       1.7      27      74 ..      74     124 ..      62     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0099
                  HHHH---BSS---SHHHHHHHHHHHHHHH----HHHH CS
    PF04310.7 177 lmfelgviakklrsasdrskfyrlieaslyggissai 213
                  +m + g i    r +s   +  rl++a l+  +s a+
  MMETSP0890-20130614|33861_1   2 QMQKQGTIVYSTRPSSASKQAGRLVDAELWSKVSPAL 38 
                  688889999999****9999*************9987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00012
                  HHHHHH--------HHHHHHHHHH...HS--TTT----------------- CS
    PF04310.7  27 elvttlsggngagksttmaafvta...lipdlsllhfrntteagassasrd 74 
                  elv + s gn   kst+maa v+     +pd   +   +tt   +++  rd
  MMETSP0890-20130614|33861_1  74 ELVEAESLGNEVTKSTAMAAAVAVakkRLPDALEFFPFDTTFRSSARDNRD 124
                  799999*************99875222477765554456776677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 890.08
//
Query:       MMETSP0890-20130614|33866_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    9.8   0.0       0.19    9.3   0.0    1.2  1  PF05994.6 Cytoplasmic Fragile-X interacting family


Domain annotation for each model (and alignments):
>> PF05994.6  Cytoplasmic Fragile-X interacting family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   1.4e-05      0.19     339     384 ..     549     595 ..     520     598 .] 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.4e-05
    PF05994.6 339 aelkesglli.lkpsanRfevllqQnhlqlLGrsiDlkrliaqrlne 384
                   +++ + l+  ++p a+R e+l+ Q +++++Gr   l  li   +n 
  MMETSP0890-20130614|33866_1 549 LHCQAKLLNAaKHPAAARREALATQTQVKIIGRTSPLDSLINALIND 595
                  456777777789**********************9999999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       901  (0.0659011); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:01.20
# Mc/sec: 1194.18
//
Query:       MMETSP0890-20130614|33862_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-17   61.4   0.0    1.3e-16   59.8   0.0    1.9  1  PF04542.9  Sigma-70 region 2
    2.8e-08   32.8   0.1    5.8e-08   31.8   0.1    1.5  1  PF04545.11 Sigma-70, region 4
  ------ inclusion threshold ------
      0.017   14.4   0.8      0.065   12.5   0.6    2.1  1  PF08281.7  Sigma-70, region 4
      0.064   12.8   0.6        0.3   10.6   0.0    2.5  2  PF13384.1  Homeodomain-like domain


Domain annotation for each model (and alignments):
>> PF04542.9  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   3.8e-20   1.3e-16       1      69 [.     136     208 ..     136     209 .. 0.97

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 3.8e-20
                  HHHHHHHHHHHHHHHHS-TT....S-HHHHHH------HHHHHTTSS--HHHHHHHHHHHH---HHHHHHTS- CS
    PF04542.9   1 lverylplvrrlarrllgsg....adaeDlvQeaflrllraverfdpergvkfsawlltiirnaildalrrrr 69 
                  lve++  lvr++ar++++++    +  +DlvQe+ ++l+ a+++fdp++g+++s+++  +ir ++   lrr +
  MMETSP0890-20130614|33862_1 136 LVEAHTGLVRSVARNFVQRPsipfSVLDDLVQEGTIGLIHAIDKFDPSKGARLSTYAQPWIRVTMTEWLRRSK 208
                  79**************999999999*********************************************975 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.7e-11   5.8e-08       4      49 ..     308     357 ..     307     358 .. 0.97

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.7e-11
                  TS-HHHHHHHHHHH....TST--CCCHHHHHTS-HHHHHHHHHHHHHHHH CS
   PF04545.11   4 sLpererevlelrf....geglTleEiGerlgisrerVrqiekrAlrkLR 49 
                   L++++ +v++lr+    g+ ++  E ++ lgis e+Vr    rA+r LR
  MMETSP0890-20130614|33862_1 308 ALDDKQMRVVRLRYglddGQTRSTRECAALLGISAETVRMTCLRAFRNLR 357
                  7************************************************9 PP

>> PF08281.7  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   1.9e-05     0.065       6      53 ..     304     355 ..     298     356 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.9e-05
    PF08281.7   6 ealaeLperqreifllryleg....lsykEIAellgisegtVksrlsRArkk 53 
                  ++ ++L  +q +++ lry  +     s++E A+llgis  tV+    RA + 
  MMETSP0890-20130614|33862_1 304 ALEQALDDKQMRVVRLRYGLDdgqtRSTRECAALLGISAETVRMTCLRAFRN 355
                  44456888888888888764434449*****************998888765 PP

>> PF13384.1  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.84   2.9e+03      10      22 ..      81      93 ..      75     102 .. 0.59
   2 ?   10.6   0.0   8.8e-05       0.3      18      44 ..     329     357 ..     308     362 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.84
    PF13384.1 10 illlldeGlsvre 22
                 ++ll++e ++ + 
  MMETSP0890-20130614|33862_1 81 LILLAREEQRLQL 93
                 5555555444433 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8.8e-05
    PF13384.1  18 lsvreiAraLgvsrrTvy.rwlkryre.e 44 
                   s+re A++Lg+s  Tv+   l+++r  +
  MMETSP0890-20130614|33862_1 329 RSTRECAALLGISAETVRmTCLRAFRNlR 357
                  499***************99999997545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.69
# Mc/sec: 1285.00
//
Query:       MMETSP0890-20130614|33872_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 355.71
//
Query:       MMETSP0890-20130614|33875_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   12.5   3.9        1.3    9.7   0.9    3.1  3  PF13428.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.1   1.4e+03       6      34 ..       3      31 ..       1      36 [. 0.75
   2 ?    0.0   0.0      0.12   1.7e+03      22      36 ..      64      78 ..      60      89 .. 0.61
   3 ?    9.7   0.9   9.5e-05       1.3       7      31 ..     106     130 ..     104     134 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.1
    PF13428.1  6 alarallalGdpdeAiallrralalaPdd 34
                 al ++ + + +p e ++  +r+l  + ++
  MMETSP0890-20130614|33875_1  3 ALSHLEFGQDHPGEEEKIIQRILDVDEQN 31
                 55555666667999999999999988776 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.12
    PF13428.1 22 allrralalaPddae 36
                 ++l +a a +P++a+
  MMETSP0890-20130614|33875_1 64 QALSWAEANNPSNAR 78
                 455555555555543 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 9.5e-05
    PF13428.1   7 larallalGdpdeAiallrralala 31 
                   ara la+ ++d+A+ ll++a+ ++
  MMETSP0890-20130614|33875_1 106 AARAALASDQFDQAASLLEDAADAH 130
                  599******************7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       482  (0.0352545); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.68
# Mc/sec: 1039.60
//
Query:       MMETSP0890-20130614|33899_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-06   26.4   0.0      5e-06   25.7   0.0    1.4  1  PF01494.14 FAD binding domain


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.6e-10     5e-06     280     325 ..      90     135 ..      64     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 3.6e-10
                  -EEEEECSSEETTEE-----SEE--S------HHHHHHHHHHHHHH CS
   PF01494.14 280 vaqrvaeryrkgrvflaGDAaHihpPtgGqGlNtaiqDaynLawkL 325
                    ++  ++ +k r+ + GDA+H ++  +GqG N a+ Da +La+ L
  MMETSP0890-20130614|33899_1  90 RDAMPSRSRSKSRLTVLGDACHPMTFFKGQGANQALADALTLAKCL 135
                  333334444566*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.34s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 916.50
//
Query:       MMETSP0890-20130614|33897_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-21   75.3  13.8    5.5e-20   71.4   2.8    2.2  2  PF02535.17 ZIP Zinc transporter
  ------ inclusion threshold ------
      0.047   12.6   3.3       0.77    8.6   2.3    2.6  1  PF00122.15 E1-E2 ATPase
        4.9    7.4   8.3        4.1    7.6   0.1    3.1  3  PF09990.4  Predicted membrane protein (DUF2231)


Domain annotation for each model (and alignments):
>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   1.5   9.4e-05      0.43       8      65 ..      32      86 ..      23     114 .. 0.56
   2 !   71.4   2.8   1.2e-23   5.5e-20     170     317 ..     131     272 ..     117     274 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.4e-05
   PF02535.17  8 iivifilsllgllgpllvplmsrlsasklvlslllafavGvllgtaflhLlpealeal 65
                 +++  +++ +g+l +++++ ++       vl l l +a+Gv+l+ + l L+ +a+++ 
  MMETSP0890-20130614|33897_1 32 VMAG-AATSVGGLAVCCINPQR--GVTAGVLALTLGLAAGVMLAVSALELVVPATNKG 86
                 2222.23333344444442222..3456677777777777777777777766666544 PP

  == domain 2    score: 71.4 bits;  conditional E-value: 1.2e-23
   PF02535.17 170 aaaviaillvlglglHsfidGLAiGvsssedt..gislflAvllHelphelglgaiLlkagasrkkavllnllfaltaplGaliGiavsaadnsgrsdlvsgillalaaGtflYvalvellpeelanekslkqnllqllglllGfalmll 317
                  ++++++il+++gl +H++++GLA+  s s++   g +++lA++lH++p++l++ ++L+ +g s   a+l+ + +++++plGa++G+++          +++  l+a+ aG++  +a+ el+pe +a+++    + + + g+l+G  l++l
  MMETSP0890-20130614|33897_1 131 RTRRLGILMAIGLTFHNLPEGLAVVISASTSRrsGAIVTLAIALHNIPEGLAIAIPLAASGKS--LALLATIASGFSEPLGAIFGLIL--LRYITITPDIIDHLEACVAGIMSAIAILELIPEARAQHR----HRHTISGFLAGWILISL 272
                  233569*****************99999998889*************************9976..689999*****************..6667888899999************************99....47888888888887765 PP

>> PF00122.15  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.3   0.00017      0.77     175     209 ..     132     190 ..      32     201 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00017
   PF00122.15 175 t........................dvaeklleallialallvvaiPegLplavtltla 209
                  t                        +   ++   +++ la+++  iPegL++a++l+ +
  MMETSP0890-20130614|33897_1 132 TrrlgilmaigltfhnlpeglavviSASTSRRSGAIVTLAIALHNIPEGLAIAIPLAAS 190
                  033333333333334444444445444466777777789**************999865 PP

>> PF09990.4  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   3.2      0.76   3.5e+03      26      54 ..      77     105 ..      25     118 .. 0.54
   2 ?    2.8   0.2     0.028   1.3e+02       3      35 ..      89     128 ..      87     174 .. 0.77
   3 ?    7.6   0.1    0.0009       4.1      19      60 ..     232     275 ..     225     294 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.76
    PF09990.4  26 elllaepsirakstallHaiggvlllali 54 
                  el++  +++ + ++a +++ig ++  +l+
  MMETSP0890-20130614|33897_1  77 ELVVPATNKGEIEAAFWFGIGCLIYWFLA 105
                  33333333355555555555544444443 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.028
    PF09990.4   3 dvswwnllaalvigflavaaGlvelllaepsi.......r 35 
                  ++++w  + +l+  fla +a l ++++ ++++       r
  MMETSP0890-20130614|33897_1  89 EAAFWFGIGCLIYWFLASLARLCDAWFFNTNQnlpliksR 128
                  68999999***********999999988666556665552 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0009
    PF09990.4  19 avaaGlvelllaepsi..rakstallHaiggvlllalivvltvW 60 
                  a +aG++ ++++ + i  ++ +    H+i g l+  +++ lt+W
  MMETSP0890-20130614|33897_1 232 ACVAGIMSAIAILELIpeARAQHRHRHTISGFLAGWILISLTIW 275
                  67788887777766555466777899****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       502  (0.0367174); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.41s 00:00:01.04 Elapsed: 00:00:00.64
# Mc/sec: 1134.53
//
Query:       MMETSP0890-20130614|33893_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-08   31.8   0.1     0.0059   15.5   0.1    2.5  2  PF01494.14 FAD binding domain
    0.00028   20.7   0.0    0.00054   19.7   0.0    1.6  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
    0.00055   18.9   0.1     0.0026   16.7   0.0    1.9  2  PF01946.12 Thi4 family
     0.0018   18.1   0.0     0.0038   17.0   0.0    1.5  1  PF13450.1  NAD(P)-binding Rossmann-like domain
     0.0021   17.7   0.0       0.53    9.9   0.0    2.3  2  PF13454.1  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.012   14.0   0.0      0.018   13.4   0.0    1.2  1  PF03486.9  HI0933-like protein
      0.013   14.2   0.0      0.025   13.3   0.0    1.4  1  PF01266.19 FAD dependent oxidoreductase
      0.014   13.9   0.0        3.1    6.2   0.0    2.3  2  PF04820.9  Tryptophan halogenase
       0.06   12.0   0.1      0.089   11.5   0.0    1.2  1  PF01134.17 Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.7e-05     0.026       2      33 ..      38      70 ..      37      77 .. 0.79
   2 !   15.5   0.1   3.9e-06    0.0059     153     311 ..     180     329 ..     136     349 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-05
                 ECEEE--------HHHHHHHHH..HHEEEEESS CS
   PF01494.14  2 tdVlIVGaGpaGlmlallLsea.Gvrvvlvekh 33
                 ++V+++G+Gp+G+ +a +L++   +++vl e+ 
  MMETSP0890-20130614|33893_1 38 YKVAVIGGGPSGACAAEILAQEpNIETVLFERK 70
                 78*****************97524666666665 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.9e-06
                  ---EEEEEECEEE-------HCHHHS-GGEEEEEEC-EE-EEEEEECS-STTTTSESCEEEEC----EEEEEECCTTEEEEEE-B-TT--GGGSGHHHHHHHHHHHCHHHH....CCT--EEEEEEEEEEE-EEEEECSSEETTEE-----SEE--S------ CS
   PF01494.14 153 tgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdivegvvlilsaesrgvmviPlesanlerfyvqvearaekeersekfteeevkarlreav....gektldveieevsawevaqrvaeryrkgrvflaGDAaHihpPtgGqGl 311
                  + +++t++ + ++GaDG++S+v+k+++              + + f+++++ i +++++ +++  ++  v+   s     + ++++ +++++  +  + ++ ++++++ a+    g+k    ei +v+a ++ + +  r  ++r +l+GDAa  ++   G G+
  MMETSP0890-20130614|33893_1 180 KAATKTMEVDVIIGADGANSRVAKAIDAG---------EYNFAIAFQERIK-ISDEQMAFYEEMAEM-YVGDDVS--PDFYGWVFPKYDHVGVGTGTVLNRPAIKEYQDATraraGKKIEGGEIIKVEAHPIPEHYRPRRIRNRAMLVGDAAGYVTKCSGEGI 329
                  4456899999*****************54.........4577899999998.555567777766664.3333333..444557777777777776666666555555544411104444555******************************99999999887 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.5e-07   0.00054       1     124 [.      39     202 ..      39     296 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.5e-07
                  SEEEE----HHHHHHHHHH.HTTSEEEEE.CSSSSSTBTSGGHHHHHHHHHHHHHHHHHHTSH.......................HHHHHHHHCTCEEEHCHEEEEE..ETTTTEE..................EEEEEEEEEEEETEEEEEEESEEEE----B---- CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxx..xxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9   1 dvviiGgGpaGlsaakdla.qkglkvali.ekeggtcvnrgclpkkllvevaegreeleelal.......................kvvdelekagieilleknvvki..dsgskkv..................vqeagavkadekgkgrdikydklviAtGarprtl 124
                  +v++iGgGp G  aa+ la   + +++l+  k+++   ++g +p  +  e  + ++++ + ++                       +++  ++++  + +l+++++++  ++ ++ v                   +++ +    +k++++++++d ++ A Ga++r+ 
  MMETSP0890-20130614|33893_1  39 KVAVIGGGPSGACAAEILAqEPNIETVLFeRKMDNAKPCGGAIPLCMV-EEFDLPMSIID-RKvrkmkmisptnrevdigstlkddEWIGMCRREIMDGYLRNRAIEYgcKPINALVtkidcptdddmtspyvihYSPNDE---GRKAATKTMEVDVIIGADGANSRVA 202
                  69*****************999*******6666677779999999876.55566666554.22357888888888888888888887777777777777777776666554444444667777777777777665333323...3556667788888888888887766 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0026      16      51 ..      36      72 ..      24      85 .. 0.85
   2 ?   -0.9   0.0       0.4   6.1e+02      13      35 ..     183     205 ..     177     223 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.7e-06
                 TEEEEEEE-------HHHHHHHTS.TS-EEEEESSS- CS
   PF01946.12 16 aesDvvivGaGssGltaayylakk.dlkvailerkls 51
                 ++  v+++G+G+sG  aa +la++ ++ ++++erk+ 
  MMETSP0890-20130614|33893_1 36 MKYKVAVIGGGPSGACAAEILAQEpNIETVLFERKMD 72
                 56789*****************************984 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.4
                  HHHTEEEEEEE-------HHHHH CS
   PF01946.12  13 lkyaesDvvivGaGssGltaayy 35 
                   k +e+Dv+i+  G+   +a  +
  MMETSP0890-20130614|33893_1 183 TKTMEVDVIIGADGANSRVAKAI 205
                  67899999998888765555444 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.5e-06    0.0038       1      28 [.      42      70 ..      42      81 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.5e-06
    PF13450.1  1 IvGaGlsGlvaAylLaka.gkdvlvlekr 28
                 ++G+G sG++aA  La++ + + +++e+ 
  MMETSP0890-20130614|33893_1 42 VIGGGPSGACAAEILAQEpNIETVLFERK 70
                 8****************9899******85 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00035      0.53       1      30 [.      41      66 ..      41      79 .. 0.81
   2 !    5.4   0.0    0.0083        13      58     117 ..     235     291 ..     217     311 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00035
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitv 30
                 a+iG+Gp+G++++e L+++     ++e  +
  MMETSP0890-20130614|33893_1 41 AVIGGGPSGACAAEILAQEP----NIETVL 66
                 89**************9994....444445 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0083
    PF13454.1  58 qislftddsgpsfleWleaqgaeeaeelepddfppRalygeYlrwvfeelvarlpegvtv 117
                  ++ + +d  +p+f+ W+  + +     +   +++ R  ++eY +++ +++ ++ + g  +
  MMETSP0890-20130614|33893_1 235 EMYVGDDV-SPDFYGWVFPKYD--HVGVGTGTVLNRPAIKEYQDATRARAGKKIEGGEII 291
                  34444444.5********9985..3699**********************9998655433 PP

>> PF03486.9  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.018       1      32 [.      38      70 ..      38      76 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
    PF03486.9  1 kdviviGgGaAGlmaAisa.akrgakVllldka 32
                 ++v+viGgG++G  aA+ + ++ + +++l++++
  MMETSP0890-20130614|33893_1 38 YKVAVIGGGPSGACAAEILaQEPNIETVLFERK 70
                 589*************88746778899999986 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.6e-05     0.025       1      31 [.      39      70 ..      39      77 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
                 EEEEE----HHHHHHHHHHH.TT-EEEEEESS CS
   PF01266.19  1 dvviiGgGivGlstAyeLar.rglkVtllekg 31
                 +v++iGgG +G+++A  La+ ++++++l+e+ 
  MMETSP0890-20130614|33893_1 39 KVAVIGGGPSGACAAEILAQePNIETVLFERK 70
                 59******************9*********97 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.002       3.1       1      22 [.      39      60 ..      39      71 .. 0.85
   2 ?    5.6   0.0     0.003       4.6     256     386 ..     247     390 ..     129     417 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.002
                 EEEEE-------HHHHHHHHCT CS
    PF04820.9  1 kivivGGGtaGwlaAaalakal 22
                 k+ ++GGG++G  aA +la+  
  MMETSP0890-20130614|33893_1 39 KVAVIGGGPSGACAAEILAQEP 60
                 799**************99865 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.003
                  ---EEE-----..-B----EE-TTTS..-HHHHHHHHHHHHT--TTTS-EEEE-----BS-SEETTEEE----S----CCC----HHHHH.......HHHHHH...HT--BTT--.HHHHHHHHHHHHHHHHHHHHHHHHHHHC-- CS
    PF04820.9 256 aGWtWkiPLqh..rlgnGyvyssaha..dddeAlaellaeldgkleaeprkirfttGrrkqawvknvvalGlasgfvePlestsihliqa.......alrrLl...allpdksde.paaiaefnrevarelervrdfiilhYkatk 386
                   GW+   P  +   +g+G v  +  +   +d   a+  ++++g    + ++ ++   +r +  ++  +++G+a+g+v    + +i+++ +       a+ + +   + lp++ d  +  i+ +++ +  +++    + +++Y  + 
  MMETSP0890-20130614|33893_1 247 YGWVF--PKYDhvGVGTGTVLNRPAIkeYQDATRARAGKKIEGGEIIKVEAHPIPEHYRPRRIRNRAMLVGDAAGYVTKCSGEGIYFAAKsgrmageAVVKAMaggSRLPTQDDInKNYIKPYDALYGPTYTVLDILQKVFYSSNP 390
                  44443..444400455677887777743334444556667777766777888888889999999***********************99988885552222221224555544332666777777777777666555566666555 PP

>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.9e-05     0.089       1      35 [.      39      74 ..      39      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.9e-05
                 SEEEE-------HHHHHHHH-.---EEEEES-GGG- CS
   PF01134.17  1 dviViGgGhAGceAAlaaarl.GakvlLithkldti 35
                 +v ViGgG +G  AA  +a+  +++++L+  k+d+ 
  MMETSP0890-20130614|33893_1 39 KVAVIGGGPSGACAAEILAQEpNIETVLFERKMDNA 74
                 699********999988877549******9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:01.01
# Mc/sec: 1089.04
//
Query:       MMETSP0890-20130614|33908_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-14   52.3   0.0    4.8e-14   52.2   0.0    1.0  1  PF02525.12 Flavodoxin-like fold
    8.1e-05   22.0   0.0    9.5e-05   21.8   0.0    1.1  1  PF03358.10 NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> PF02525.12  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   7.1e-18   4.8e-14       2      90 ..       2      98 .]       1      98 [] 0.86

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 7.1e-18
   PF02525.12  2 kiLiinahprpeksfssalaqafvealeeagphevtvrdLyad.flpvlttrdlaa.........k.layeekpeadveseq.iekllaadvivlqfPlww 90
                 ++L+++ahp +eks+s+a+a+++  +l +ag hev    Ly++ f p+++++                 y++   + ++  + i +l+ + ++vl++P ww
  MMETSP0890-20130614|33908_1  2 RVLLVHAHPLGEKSLSGAIANQVRRGLSDAG-HEVVFYSLYDTrFEPRVSKDERGRylgptkdspNlPRYPT---PSADLTKpISELKKCNALVLVYPTWW 98
                 79*****************************.******************9777779998865432455555...455555556***************** PP

>> PF03358.10  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.4e-08   9.5e-05       2      82 ..       2      98 .]       1      98 [] 0.86

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.4e-08
                 EEEEE----.----HHHHHHHHH------.--EEEEEE---...GG-GGHHH.HC..............--STCCHCHHHHHHHH-SEEEEEEEECT CS
   PF03358.10  2 kilvisGsl.rkgsntrklaqwaaealkeagaevelidladl.ilplcdedlese..............gqtsddlqellekvaaadgviivtPeYn 82
                 ++l++++ +  ++s + ++a+++ ++l++ag+ev + +l d   +p + +d+  +                +s+dl++ + +++++ ++++v P+++
  MMETSP0890-20130614|33908_1  2 RVLLVHAHPlGEKSLSGAIANQVRRGLSDAGHEVVFYSLYDTrFEPRVSKDERGRylgptkdspnlpryPTPSADLTKPISELKKCNALVLVYPTWW 98
                 6888877773699*****************************9999666666555666666667889998999999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:01.37
# Mc/sec: 171.42
//
Query:       MMETSP0890-20130614|33913_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-23   84.1   0.0    1.9e-23   83.3   0.0    1.4  1  PF00233.14 3'5'-cyclic nucleotide phosphodiesterase


Domain annotation for each model (and alignments):
>> PF00233.14  3'5'-cyclic nucleotide phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   1.4e-27   1.9e-23     115     232 ..       1     121 [.       1     126 [. 0.90

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 1.4e-27
   PF00233.14 115 lslhlkklkrlkkmveqkkvldld....dkikvlsllltaaDlSnvtkplkvskriaelimeEFfeqgdlErelglkpspmcdrekaeveksqvgfideivepvfklladvvekdiqellda 232
                  +s+h + +kr+k  ++ +++++         ++ls+ l++aD+Sn+++p++v++r+   +++EF++ gd +r+ g k+ p+ dre+  ++ks vgfi ++v p+f+++  ++++ i+++   
  MMETSP0890-20130614|33913_1   1 MSKHTELVKRIKDNLSDSESYNPLstheGVDLTLSIALKCADISNQARPWRVANRWNDYVYREFYAEGDNDRQAGRKVPPLFDRESNDIPKSSVGFIGFVVAPLFEVFLAIMKR-IADTNTV 121
                  9*******************887665434467899***************************************************************************9999.6555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       538  (0.0393505); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.65
# Mc/sec: 1102.32
//
Query:       MMETSP0890-20130614|33919_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       486  (0.0355471); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.44s 00:00:01.07 Elapsed: 00:00:00.66
# Mc/sec: 1125.56
//
Query:       MMETSP0890-20130614|33924_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       388  (0.0283792); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 800.38
//
Query:       MMETSP0890-20130614|33956_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 795.31
//
Query:       MMETSP0890-20130614|33967_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   25.3   0.1     0.0075   16.1   0.0    3.1  3  PF00652.17 Ricin-type beta-trefoil lectin domain
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.058   13.6   0.0    1.7  2  PF14200.1  Ricin-type beta-trefoil lectin domain-like


Domain annotation for each model (and alignments):
>> PF00652.17  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.035   2.4e+02      32      61 ..      40      72 ..      38      85 .. 0.83
   2 !    3.5   0.0     0.009        61      55      91 ..     150     192 ..     138     205 .. 0.62
   3 !   16.1   0.0   1.1e-06    0.0075       9      44 ..     228     264 ..     223     274 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.035
                 --T-GGGEE...EEETTS-EEETTTTTEEEEES CS
   PF00652.17 32 chgganQlw...tltkdgqirsnkkselCLdvs 61
                 ch++ n+ +   ++++ +  ++n+++++CL+ +
  MMETSP0890-20130614|33967_1 40 CHKHYNDNFlhvQFDQWENEKPNASKHKCLQPN 72
                 999999888899999999999999999999865 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.009
                  TEEEEESSSS...TT-BEEEEES-TTGGGG-EEEET...TTEE CS
   PF00652.17  55 elCLdvsgsk...egsnvqlascnsgssnqrWtyde...ngti 91 
                  elCL+vs+       + v la+c ++++ q +++ +   +g i
  MMETSP0890-20130614|33967_1 150 ELCLQVSDFPltkFARDVGLAPCRPEEPLQIFDLGPcssDGNI 192
                  3366666665555556666677766666666666655544444 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.1e-06
                  CSTTEEEEET..T--TTEEEEEEE--T-GGGEEEEET CS
   PF00652.17   9 nlsgkCLdve.gnradgsavglydchgganQlwtltk 44 
                   ++g+CLd e ++ + g++++ y c+g  nQl+ + +
  MMETSP0890-20130614|33967_1 228 PRNGLCLDLErESIQPGTPIIAYACSGRWNQLFGFGS 264
                  5689****************************97765 PP

>> PF14200.1  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   8.4e+03      24      58 ..     149     185 ..     146     197 .. 0.56
   2 ?   13.6   0.0   8.4e-06     0.058      68     104 ..     227     262 ..     219     263 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.2
    PF14200.1  24 sglyLdvdg.gatkegtkvqlwpasg.daaqqWkisq 58 
                  + l+L+v++   tk   +v l p+ + ++ q + + +
  MMETSP0890-20130614|33967_1 149 TELCLQVSDfPLTKFARDVGLAPCRPeEPLQIFDLGP 185
                  5556666665555566666666666656666666666 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 8.4e-06
    PF14200.1  68 nantglvLdvsggstkngtevvlweydngsenqkWkl 104
                  ++++gl+Ld+  +s ++gt+++ + + +g+ nq + +
  MMETSP0890-20130614|33967_1 227 VPRNGLCLDLERESIQPGTPIIAYAC-SGRWNQLFGF 262
                  45899********************9.9*****9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 1641.28
//
Query:       MMETSP0890-20130614|33974_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-19   68.2   4.2    2.7e-12   46.5   1.4    2.3  2  PF13499.1  EF-hand domain pair
    1.4e-17   61.4   6.1    1.6e-07   29.9   0.5    4.0  4  PF00036.27 EF hand
    3.3e-16   58.5   3.9    1.8e-11   43.3   0.2    3.5  4  PF13833.1  EF-hand domain pair
    4.6e-16   57.0   2.3    0.00068   19.2   0.1    4.0  4  PF13405.1  EF-hand domain
    2.4e-08   32.8   2.8     0.0031   16.6   0.1    3.2  3  PF13202.1  EF hand
     0.0034   16.9   1.7       0.56    9.8   0.1    2.3  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.024   14.8   0.5       0.65   10.2   0.1    2.3  2  PF03448.12 MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     8e-08   0.00016       2      66 .]      28      88 ..      27      88 .. 0.89
   2 !   46.5   1.4   1.4e-15   2.7e-12       3      66 .]     102     161 ..      98     161 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 8e-08
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66
                 l+ea +l+D+ + g++++ e++ l k+lg     + +++ + ++++++D  + G +++e fl ++
  MMETSP0890-20130614|33974_1 28 LCEAYDLFDSERRGHITMHEFKILVKALG----FRIKKQDVVDWVARVDPYNKGIITYELFLRIM 88
                 899**************************....55666666778**************9887776 PP

  == domain 2    score: 46.5 bits;  conditional E-value: 1.4e-15
    PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                   +aF+l+D+d +g+++   L+ +++ lg++l +ee++ +    ++e+D n dG+++ +Efl+++
  MMETSP0890-20130614|33974_1 102 SKAFELFDSDSTGKISIKNLRDVANDLGEQLPEEEIKAM----IEEFDRNLDGYIDQDEFLSIM 161
                  569*************************99999999999....******************997 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.6e-05     0.051       1      28 [.      27      54 ..      27      55 .. 0.90
   2 ?   -0.6   0.0      0.48   9.4e+02      13      27 ..      75      89 ..      65      90 .. 0.81
   3 !   18.8   0.1     3e-07   0.00058       1      27 [.     100     126 ..     100     128 .. 0.89
   4 !   29.9   0.5   8.4e-11   1.6e-07       1      28 [.     136     163 ..     136     164 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkk 28
                 el ea ++fD  + G+I+  Efk ++k+
  MMETSP0890-20130614|33974_1 27 ELCEAYDLFDSERRGHITMHEFKILVKA 54
                 566899*****************99987 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.48
                 TSSEBEHHHHHHHHH CS
   PF00036.27 13 gdGkIsfeEfkealk 27
                 + G I++e f+++++
  MMETSP0890-20130614|33974_1 75 NKGIITYELFLRIMT 89
                 679999997888776 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 3e-07
                  HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                  e+ +aF++fD D +GkIs + ++++ +
  MMETSP0890-20130614|33974_1 100 EISKAFELFDSDSTGKISIKNLRDVAN 126
                  7899****************9998765 PP

  == domain 4    score: 29.9 bits;  conditional E-value: 8.4e-11
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  e+k +++efD++ dG+I+ +Ef++++++
  MMETSP0890-20130614|33974_1 136 EIKAMIEEFDRNLDGYIDQDEFLSIMRT 163
                  79************************86 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0013       2.6      22      51 ..      23      52 ..      16      55 .. 0.83
   2 !   13.4   0.0     2e-05     0.038       2      53 ..      40      90 ..      39      91 .. 0.90
   3 !   10.2   0.1   0.00021       0.4       2      43 ..      76     117 ..      75     119 .. 0.87
   4 !   43.3   0.2   9.4e-15   1.8e-11       2      52 ..     113     162 ..     112     164 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0013
    PF13833.1 22 lseeevdilfrefDtdgdGkisfeEFcvll 51
                 +++ e+++ +++fD ++ G i+  EF+ l+
  MMETSP0890-20130614|33974_1 23 VEKRELCEAYDLFDSERRGHITMHEFKILV 52
                 6677899999****************8776 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2e-05
    PF13833.1  2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53
                 +G It++e+k  +++lg   +++++v + +  +D  ++G+i++e F++ +++
  MMETSP0890-20130614|33974_1 40 RGHITMHEFKILVKALGFR-IKKQDVVDWVARVDPYNKGIITYELFLRIMTD 90
                 689*******977999999.***********************998888876 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00021
    PF13833.1   2 kGlItreeLkral.allglkg.lseeevdilfrefDtdgdGkis 43 
                  kG It e + r++ +  ++++   +ee+   f +fD d  Gkis
  MMETSP0890-20130614|33974_1  76 KGIITYELFLRIMtD--RYSErDPDEEISKAFELFDSDSTGKIS 117
                  899**********88..5555588889****************8 PP

  == domain 4    score: 43.3 bits;  conditional E-value: 9.4e-15
    PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvlle 52 
                  +G+I+ ++L++ ++ lg + l eee+ +++ efD++ dG+i+++EF++ ++
  MMETSP0890-20130614|33974_1 113 TGKISIKNLRDVANDLGEQ-LPEEEIKAMIEEFDRNLDGYIDQDEFLSIMR 162
                  89*********99888***.**************************99875 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.5e-06     0.011       2      31 .]      28      56 ..      27      56 .. 0.88
   2 ?   -0.7   0.0      0.83   1.6e+03      12      27 ..      74      89 ..      69      93 .. 0.81
   3 !   19.2   0.1   3.5e-07   0.00068       2      30 ..     101     128 ..     100     129 .. 0.89
   4 !   19.1   0.1   3.5e-07   0.00069       2      28 ..     137     163 ..     136     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.5e-06
                 HH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLrkslg 31
                 l ea++lfD  + G i+ +E++ + + +lg
  MMETSP0890-20130614|33974_1 28 LCEAYDLFDSERRGHITMHEFKILVK-ALG 56
                 55899*****************9888.665 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.83
                 -----B---HHHHHHH CS
    PF13405.1 12 dgdGkidaeELrdaLr 27
                  ++G i+ e ++++++
  MMETSP0890-20130614|33974_1 74 YNKGIITYELFLRIMT 89
                 5789999999999987 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 3.5e-07
                  HH---GCC-------B---HHHHHHH.H- CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrksl 30 
                  + +aF+lfD d +Gki+++ Lrd+ + +l
  MMETSP0890-20130614|33974_1 101 ISKAFELFDSDSTGKISIKNLRDVAN-DL 128
                  679********************987.55 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 3.5e-07
                  HH---GCC-------B---HHHHHHH. CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                  +++  + fD++ dG+id++E+++++r+
  MMETSP0890-20130614|33974_1 137 IKAMIEEFDRNLDGYIDQDEFLSIMRT 163
                  5666689******************96 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.21   4.1e+02      14      23 ..      41      50 ..      41      52 .. 0.84
   2 !   16.6   0.1   1.6e-06    0.0031       3      24 ..     103     124 ..     101     125 .. 0.88
   3 !   13.7   0.3   1.3e-05     0.026       1      22 [.     137     158 ..     137     162 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.21
                 --B-HHHHHH CS
    PF13202.1 14 GkIsreELkr 23
                 G I++ E+k 
  MMETSP0890-20130614|33974_1 41 GHITMHEFKI 50
                 89******85 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.6e-06
                  HHHHHH--S----B-HHHHHHH CS
    PF13202.1   3 dtFrafDlNgDGkIsreELkrl 24 
                  ++F+ fD +  GkIs++ L+ +
  MMETSP0890-20130614|33974_1 103 KAFELFDSDSTGKISIKNLRDV 124
                  57***************99976 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 1.3e-05
                  HHHHHHHH--S----B-HHHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreELk 22 
                  +k++ ++fD N DG I+ +E+ 
  MMETSP0890-20130614|33974_1 137 IKAMIEEFDRNLDGYIDQDEFL 158
                  678889**************95 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0032       6.3      24      71 ..       7      54 ..       2      71 .. 0.84
   2 !    9.8   0.1   0.00028      0.56       6      71 ..      98     163 ..      93     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0032
    PF12763.2 24 nkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrl 71
                 + l +d+  ++   s++e+ +l + +dl d +  g++ ++ef i ++ 
  MMETSP0890-20130614|33974_1  7 KCLDNDEEWAINTLSEVEKRELCEAYDLFDSERRGHITMHEFKILVKA 54
                 567777778888899***************************998874 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00028
    PF12763.2   6 eleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrl 71 
                  + ei k +e+f++ +  +  +++ +  +     +l+e++++ + +  d + dg +d +ef  +mr 
  MMETSP0890-20130614|33974_1  98 DEEISKAFELFDSDSTGKISIKNLRDVANDLGEQLPEEEIKAMIEEFDRNLDGYIDQDEFLSIMRT 163
                  5799999999999888777776665544445689******************************95 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.09   1.7e+02      62      93 ..      10      43 ..       5      46 .. 0.75
   2 ?   10.2   0.1   0.00033      0.65      14      62 ..      97     145 ..      89     148 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.09
                 -HHHHHHH..HCCCHCCHHHHHHHCS-CCCHHHH CS
   PF03448.12 62 dsDdavdl..leelpeekveellsaldeeereei 93
                 d+D+   +  l+e+++++  e +++ d+e+r +i
  MMETSP0890-20130614|33974_1 10 DNDEEWAIntLSEVEKRELCEAYDLFDSERRGHI 43
                 5555444444999999999999999999999887 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00033
                  -HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCTS- CS
   PF03448.12  14 deeeraallrllpkeeaaevleelsedlqeeliealpdeelaelleeld 62 
                  ++ee  + ++l +++  +++  +   d++ +l e+lp+ee+++++ee d
  MMETSP0890-20130614|33974_1  97 PDEEISKAFELFDSDSTGKISIKNLRDVANDLGEQLPEEEIKAMIEEFD 145
                  779999****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       767  (0.0561001); expected 273.4 (0.02)
Passed bias filter:                      616  (0.0450556); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 729.33
//
Query:       MMETSP0890-20130614|33986_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.43s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 347.30
//
Query:       MMETSP0890-20130614|33996_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   12.0   0.0         21    5.0   0.0    2.4  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0015        21      16      38 ..      15      37 ..      10      38 .. 0.89
   2 ?    4.7   0.0    0.0019        26      14      35 ..      71      92 ..      62      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0015
                 EEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27 16 cvafspdgpllasgSrDgtirlW 38
                 ++af+p +++l  gS  g + +W
  MMETSP0890-20130614|33996_1 15 SIAFNPLQRYLTIGSQAGLVAMW 37
                 89*************98888888 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0019
                 EEEEEEESSSTEEEEEETTSEE CS
   PF00400.27 14 VtcvafspdgpllasgSrDgti 35
                 ++ +a+ p + lla  S+ g+i
  MMETSP0890-20130614|33996_1 71 IEKLAWGPGQGLLAAVSAQGCI 92
                 7899************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 333.55
//
Query:       MMETSP0890-20130614|33993_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.5   0.2      0.023   14.1   0.1    1.3  1  PF04383.8 KilA-N domain
      0.047   13.3   9.0      0.055   13.1   5.7    1.5  1  PF06084.6 Cytomegalovirus TRL10 protein
      0.049   13.2  11.4      0.064   12.8   7.9    1.1  1  PF04889.7 Cwf15/Cwc15 cell cycle control protein
       0.15   11.1   3.3       0.14   11.1   1.7    1.4  1  PF11981.3 Domain of unknown function (DUF3482)


Domain annotation for each model (and alignments):
>> PF04383.8  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.7e-06     0.023      14      63 ..      24      73 ..      12     104 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.7e-06
    PF04383.8 14 kdgyinatkllkaaaektkrfddWlrnestkelleelerdnnisesqkk....k 63
                 +++ i a kl+ a    tkrf++Wl+ +++k  le+le+  + +e+qk+    +
  MMETSP0890-20130614|33993_1 24 STDDIVADKLADAL---TKRFRQWLEEDESKA-LEKLESFVRRREEQKSqqvqI 73
                 56668899999999...6*********99965.455555555544444433231 PP

>> PF06084.6  Cytomegalovirus TRL10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   5.7   1.6e-05     0.055     103     150 .]      90     141 ..      59     141 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
    PF06084.6 103 trkkleqhaakkqniye....ripyrpsrqkdnsplieptgtddeededddv 150
                   r k e+   +++ +ye    ri yrp r    sp    +++dd e+ed++v
  MMETSP0890-20130614|33993_1  90 RRDKAESEIRRRRAVYEfkedRIDYRPPRHYITSPAADDDASDDAEEEDESV 141
                  4789999999999999777779***************************976 PP

>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   7.9   1.9e-05     0.064      53     147 ..      35     139 ..      23     142 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-05
    PF04889.7  53 elekrdlraeLleaEaaakakke........kskkkralenakkeeeleaakeaeededeekeakrkkk..leeareidaddsdkseeesdesdddsdddddeDe 147
                  ++ ++ +r+ L+e E +a +k e        +++++ ++e  +k+ e +  +  +++++ e+e++r+++  + +++ id     +  ++   +dd sdd ++eDe
  MMETSP0890-20130614|33993_1  35 DALTKRFRQWLEEDESKALEKLEsfvrrreeQKSQQVQIEIDRKNYERQRLNAIHRRDKAESEIRRRRAvyEFKEDRIDYRPPRHYITSPAADDDASDDAEEEDE 139
                  456889999999999999999988999888777788888888899999999999999999999988887443333444444433333334444444554444444 PP

>> PF11981.3  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   4.2e-05      0.14      47     109 ..      11      72 ..       3      93 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.2e-05
    PF11981.3  47 iaareeqrqarrqeaarliaelLidvaalrrkvaseeaaeaslleelqekvRqrEqkaqraLl 109
                  i+ + +  +a  +++  ++a+ L+d+++ r +   ee+++ ++le+l+  vR+rE++  ++++
  MMETSP0890-20130614|33993_1  11 IQLFGRYYAAVSESTDDIVADKLADALTKRFRQWLEEDES-KALEKLESFVRRREEQKSQQVQ 72 
                  66666777788899999*************5545555555.69************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1399  (0.102326); expected 273.4 (0.02)
Passed bias filter:                      712  (0.0520772); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.57
# Mc/sec: 594.96
//
Query:       MMETSP0890-20130614|33999_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-06   26.5   0.0    5.8e-06   25.9   0.0    1.3  1  PF02622.10 Uncharacterized ACR, COG1678
  ------ inclusion threshold ------
      0.016   14.5   1.5      0.023   14.0   1.0    1.2  1  PF03286.9  Pox virus Ag35 surface protein
       0.23   10.5   1.2       0.34   10.0   0.9    1.2  1  PF05009.7  Epstein-Barr virus nuclear antigen 3 (EBNA-3)


Domain annotation for each model (and alignments):
>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.3e-09   5.8e-06      52     134 ..     170     268 .]     144     268 .] 0.73

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.3e-09
   PF02622.10  52 lkeqsvllGGPveqergfvlhsaeke............aeesslevseglllttsldilea..liasgegpeklll..flGYagWgagQLesEieegsW 134
                    ++  + GGPv++e+++ l   e              +e ++++ ++   l ++l +l+    ia++ g  +++l    G+a W+a+QL sEi++gsW
  MMETSP0890-20130614|33999_1 170 GVQCAAFSGGPVHREQVLGLLLFEGIsdleplltivepHEAEQWHCEDASGLLSTLPVLARlvPIARNLGATNIRLlaWSGFAVWSADQLISEIARGSW 268
                  45667899****99996644444334448888888766668899999999999999999994446677566665551167******************* PP

>> PF03286.9  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   5.1e-06     0.023      27     126 ..      52     151 ..      40     171 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.1e-06
    PF03286.9  27 eaenadkveddi..fpeDieiPvsekkpkkkrkttkrk.pvkkkkskkkekekeeeeekkeeededkdteenendddekeeskdskesasaneqsdeddede....i 126
                  ++++  +++dd+  +p+   iPv+++ p  +r     + +++  + ++++       e++  +++++ +e  e+d + + +++d+ + +s++++s++dd+d+     
  MMETSP0890-20130614|33999_1  52 QTNSLGEHRDDLsdLPQRSTIPVPSQAPGLNRRFQWLRsAAHILRREHQRN------EEDIIDENHQ-EEHAEQDTEADFDEDDIPSLTSPTSSSSDDDNDDnqveF 151
                  566666667776445555578877777766655433330333333333333......3444444444.566666666666677777777766666333333323333 PP

>> PF05009.7  Epstein-Barr virus nuclear antigen 3 (EBNA-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.9   7.4e-05      0.34     204     241 ..      95     135 ..      76     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.4e-05
    PF05009.7 204 lrleg.epdedaivEtsseee...dvesesddedelPrivpr 241
                  lr e+  ++ed+i E+++ee    d+e++ d++ ++P   + 
  MMETSP0890-20130614|33999_1  95 LRREHqRNEEDIIDENHQEEHaeqDTEADFDED-DIPSLTSP 135
                  444443567899999999987888999999997.***98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      489  (0.0357665); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.46s 00:00:00.96 Elapsed: 00:00:00.77
# Mc/sec: 834.06
//
Query:       MMETSP0890-20130614|34003_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.46s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 806.05
//
Query:       MMETSP0890-20130614|34004_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 262.61
//
Query:       MMETSP0890-20130614|34015_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-33  113.9   0.0    5.5e-33  113.7   0.0    1.0  1  PF02223.12 Thymidylate kinase


Domain annotation for each model (and alignments):
>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0     4e-37   5.5e-33      18     186 .]       2     164 ..       1     164 [. 0.93

  Alignments for each domain:
  == domain 1    score: 113.7 bits;  conditional E-value: 4e-37
                  HHHHHSEE-.EEEESS-TTS----HHHHHHHTCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-CTHHHHHHHT-TT--HHHHHHHGGGHH-BE-SEEEEEE.SSHHHHHTHHHTTT-TT.SHHHHHHHHHHHHHHHHHHHHCTTTEEEEETTT-HHHHHHHH CS
   PF02223.12  18 eklkeqgik.vvltrepggteiGelirelllkeeeleelteallfaadriehleekikpalkqgktvivdRylfSslaYqgakegvdldlvlslnedvlldkPdltflld.vdpevalkRlrkrgeldeeeeeqldflrkvrekylelakekeriliidasksieevheeI 186
                  e l+++g++  +++++++ t iG+li+++l+ke+el++++++llf+a+r ++l+ +i+ +++ g  vi+dRy++S++a+++ak+ +  d+ +++ +d++l++Pdl+++l+ + p+ a kR +  +e+    +e+ +++r+v +++++l     r++i+da +  ++v ++I
  MMETSP0890-20130614|34015_1   2 ETLEKRGRSaSLMRFPERATAIGNLINRYLKKEIELDDHAIHLLFSANR-WELAVSIQDSVNAGTDVICDRYAYSGVAFSAAKS-NIQDIEWCKAPDAGLPEPDLIIYLEfTHPQDAEKRGGYGDER----YEDPQMQRRVAQNFKSLR--SPRWKIVDAGRDPDDVARDI 164
                  78999999999**************************************.*******************************998.689**********************88999***********5....666666677888888888..89**********99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 555.11
//
Query:       MMETSP0890-20130614|34017_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   15.3   0.0      0.011   14.7   0.0    1.2  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.8e-07     0.011     236     265 ..      63      92 ..      54      97 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.8e-07
   PF03016.10 236 ssrFClvppGdtptsrrlfdallagCiPVi 265
                  +s F ++p+Gd  ts r+++a+l   iPV+
  MMETSP0890-20130614|34017_1  63 KSIFVICPAGDLWTSGRIIEAMLLRNIPVV 92 
                  699**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.95
# Mc/sec: 708.82
//
Query:       MMETSP0890-20130614|34019_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 434.77
//
Query:       MMETSP0890-20130614|34008_1  [L=869]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-45  155.3   0.1    2.1e-45  154.9   0.0    1.1  1  PF00063.16 Myosin head (motor domain)
      7e-13   48.1   0.0    4.7e-09   35.6   0.0    2.4  2  PF06017.8  Myosin tail
    2.8e-08   33.4   0.0    2.8e-08   33.4   0.0    2.0  2  PF01363.16 FYVE zinc finger
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.021   14.2   0.0    1.4  1  PF14237.1  Domain of unknown function (DUF4339)


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   6.1e-49   2.1e-45     454     689 .]       9     243 ..       2     243 .. 0.89

  Alignments for each domain:
  == domain 1    score: 154.9 bits;  conditional E-value: 6.1e-49
                  -HHHHHHHHHHHHTTTSTTEE-TTTSTTT-SSEEEEEESSCEEEEE-TTHHHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH...................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CSTT--SSHHHHHHHHHHHT...................T--GGGEEB---EEEES CS
   PF00063.16 454 tdesflekllktfeskhlkfskkrlskaraessftvkHyAgeVeYsaegflekNkdplsedlvellkssssslvaelfkeeelaedfeeeeaaaesaklgsakgksgkkkkfetvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvklselvgdekkacekilkel...................eldkeeyrvGktkvFfr 689
                   d++fl+ + + + s+h +f k+       ++ ft+kHyAg+VeY+ +gf e N+d l  dl++++ +ss++ ++ l++++            a+  +++ + +++ +k + +t+g +++e++  l+++L  ++ph+vrC+k+ne+k+a + d+++v +q+k+lG+ e++r+rraGf++r+++++f+er+k+l+ ++ ++  e++g++k++++ i++++                     ++++ ++G tk+F++
  MMETSP0890-20130614|34008_1   9 IDAKFLDTVASCH-SSHRHFIKT-------KQGFTIKHYAGDVEYNSSGFAESNRDELRSDLLDVILASSDTSLVALYNDDVQ----------ARDLAAQAEAAGQRQKTTQRTAGRKIREQCSDLVSALMICEPHYVRCVKSNENKAALNCDDERVTHQVKYLGLPENVRVRRAGFAYRTEYHRFLERFKVLSTRTYPA--EWTGSDKDGARCIVEAAtklgqssfadepilkhlaaLGNASDTQFGRTKLFVK 243
                  6999******999.999999666.......579**************************************99999*999543..........44444455555666666889************************************************************************************988..5*************999889999999999998888744678899999999975 PP

>> PF06017.8  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.4e-12   4.7e-09      13     125 ..     295     428 ..     294     437 .. 0.77
   2 !    9.8   0.0   0.00011      0.39     110     147 ..     497     535 ..     496     549 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.4e-12
    PF06017.8  13 KerrrqSvnrkFvgDYlslee......npklqkavaseekke.kVlFadkvnKvnr....ssK......pskRaLlLTdkalylverekkk....kkktyvlkrkiplseitsvSlSslqDdlfvlhvsqkgDl 125
                  K rr++Sv+r++ +DYl+ +       ++ l ++++  +++e ++lF d  +++ r     +K        +R+L +T++alyl+e+   +    k ++ +l r+++l+ei ++ +S+ +Dd++vl+v++++ +
  MMETSP0890-20130614|34008_1 295 KRRRASSVDRPYLSDYLRDDDaafrgaRRGLHAILKHYNDDEgRILFLDPLTRILRknptPKKdtppgfFLPRVLAVTSNALYLIEKCSTEesgaKHRVWQLRRRLELREICGLIVSRAADDIVVLKVRGERGF 428
                  889**************866421112245666666666665589******8888886553222222222468*************876666999999*******************************887655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00011
    PF06017.8 110 lqDdlfvlhv.sqkgDlvlelefktElvtvLlkkykkat 147
                   +D l+ lh  +  +D+ l+le+ +Elv+vL+k+++ + 
  MMETSP0890-20130614|34008_1 497 VSDALVGLHSsEPREDIALSLERRSELVAVLIKANNIKL 535
                  589*******999********************987544 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4         3     1e+04      32      47 ..     106     121 ..      97     150 .. 0.56
   2 !   33.4   0.0   8.1e-12   2.8e-08       2      60 ..     441     498 ..     440     501 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3
   PF01363.16  32 GkvvCskCsskrvekl 47 
                  G+ + ++Cs+  ++ +
  MMETSP0890-20130614|34008_1 106 GRKIREQCSDLVSALM 121
                  5555566665554333 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 8.1e-12
   PF01363.16   2 kwvpdaeakkCeiCakkF.sltrrrhhCrlCGkvvCskCsskrvekleeeaaeekevrvC 60 
                  kw+++a++k C+i +k+F  l+ +rhhCr+ G++  ++ +++r++ +  + ++++++rv 
  MMETSP0890-20130614|34008_1 441 KWQKNADIKVCPITGKNFgLLSAKRHHCRASGRIYAAEACETRQTFP--DDGWHQPERVS 498
                  7*****************55669*************99999999777..88999999996 PP

>> PF14237.1  Domain of unknown function (DUF4339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.2e-06     0.021       8      43 ..     748     784 ..     740     786 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.2e-06
    PF14237.1   8 gqqaGPfsleeLrqliasgqitpdtlvWkeGmsd.Wq 43 
                  g+q GP +l+eL+++++ g+ + d lv+ +G  + W+
  MMETSP0890-20130614|34008_1 748 GAQCGPSTLAELKAKYEGGETNNDCLVYAAGVVEeWK 784
                  89*****************************866687 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       916  (0.0669982); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.42u 0.36s 00:00:01.77 Elapsed: 00:00:01.09
# Mc/sec: 1910.49
//
Query:       MMETSP0890-20130614|34050_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       133  (0.00972791); expected 273.4 (0.02)
Passed bias filter:                      127  (0.00928906); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 223.11
//
Query:       MMETSP0890-20130614|34038_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.8    8.2   3.9        4.1    7.0   2.7    1.7  1  PF01484.12 Nematode cuticle collagen N-terminal domain


Domain annotation for each model (and alignments):
>> PF01484.12  Nematode cuticle collagen N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.7    0.0003       4.1       3      32 ..       7      36 ..       2      44 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0003
   PF01484.12  3 aysavafStvavlsslvtlpsiyndinsfq 32
                 a+++ ++ + a+l++l+++ +iy d n f 
  MMETSP0890-20130614|34038_1  7 AIFCGVALGYALLCALLFIIIIYTDFNAFA 36
                 556667777789*************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      611  (0.0446899); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 854.35
//
Query:       MMETSP0890-20130614|34040_1  [L=820]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-44  150.0   0.0    9.9e-44  149.3   0.0    1.4  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    6.1e-10   38.8   0.0    2.6e-09   36.8   0.0    1.9  1  PF13423.1  Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0   1.4e-47   9.9e-44      46     272 .]       3     739 ..       1     739 [. 0.97

  Alignments for each domain:
  == domain 1    score: 149.3 bits;  conditional E-value: 1.4e-47
                  TTHHTTTHHHHHHHHHHHHH--HHH-SSS---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-.......................-SCHHHHC-EEEEEEEEETTCEEE......................................................................................................................................................................................................................................................................................................................................................................................................................................................EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SE.EE-GGGBSCHHH...................................................--BTTSSCEEEEEEEEEE---TT---EEEEEE.......SS-TT-EEEEETTEEEEE-HHHHTTCEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxx......................................................................................................................................................................................................................................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00443.24  46 neleeeaqlaraladlfkklvenssekkavsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqkaeds...................ndslitdlfkgqlksrlkclecknv......................................................................................................................................................................................................................................................................................................................................................................................................................................................kvklkrlPeiLiihlkRfkyseerssnkKlnekvefple.Ldlssyvneekk...................................................eeseskpkkYeLvavvvHsGslssGHYvayvk.......nneknkWlkfdDetvtevkeeevlkesaYvlfY 272
                  n+l+  +++a+a a+ ++++   s    +++P ++++++ ++n+++ g  QqDahE+l +lLd+lhed +r  k +   ++k e+s                   n s++    +g l+s+l+c+ c+ +                                                                                                                                                                                                                                                                                                                                                                                                                                                      ++ l+r+P++Li+ lkRf    +  + +Kl++ v+fpl  Ldl +++++  +                                                   ++++++ ++Y L+avv+H G +++GHY+ay++       n ++++W+k dD++vt+v+++ + +++aYvlfY
  MMETSP0890-20130614|34040_1   3 NPLGCMGKVAHAYASTLQAM--LSTDSFSLAPLQLLRAVVSKNPDLGGRGQQDAHELLETLLDGLHEDTKRPVKPSLHPTPKLESStyqddgavaasawsehwrrNASTVAASTHGLLRSTLECPVCGLRcarfdpfstleleiaeadpqaiddpsalsegdddstpieepseptrtrlsesdkdsslsslpspsrspglpdgillrskrvllledsektpkwapsilvpaeprpallavlraaeaalpgmrgkrlaiyelviqdnvflspkrlnelpieavvlnntngnaaenekrsvllvvvseplpgqklglirhlspeaneigkpldtvtplslgadwtedrirlsvwraakrvveldgvdarppnpadfrfisigspatsfsrqqmsqklqsrkthmgmrensehddseldsvldeildeeldspipsskpsvvcgfvadwsttsrvmsrgirlkprravpqdlnaeqfdcfreaceiavsdlgrtraldrrtkrrallraerenieasrrlwhqplanlslfradapitleaclrrftsleyldadnswhctkcnvrrcarkRIALWRTPDVLIFALKRF----SPLTGRKLDRPVDFPLDnLDLAPFTAHAHSsvgskrfvssaaaatpvskhtsgtapstptrlvssgcstpssftqsssiqqQQQQNPVHTYTLFAVVNHFGHAGYGHYTAYIRdvwqspeNPRSKQWFKADDSSVTPVDASVICSSAAYVLFY 739
                  67777889999*********..78888889*****************************************5555555555555334566799999**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************....777889********************8877**************************************************999************************************999******************************* PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   3.8e-13   2.6e-09     161     295 .]     519     721 ..     378     721 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 3.8e-13
    PF13423.1 161 k.............giklenileeslnseknke...ikcesckkkssaevakkftslPpiLgIclkrynekefgakrlntkvdiple.lrlphf.................................................iqddeqenekplsgefkyeLqavVchigdsltsghlvSlirvae..sek....sqWylFnDfrv 295
                  +              i+le +l+++ + e  +    + c +c+    a  ++ + + P++L   lkr +  +   ++l++ vd+pl+ l+l  f                                                 +q ++++++++++    y L avV h g     gh+ ++ir     + +    +qW + +D++v
  MMETSP0890-20130614|34040_1 519 HqplanlslfradaPITLEACLRRFTSLEYLDAdnsWHCTKCNVRRCARKRIALWRTPDVLIFALKRFS--PLTGRKLDRPVDFPLDnLDLAPFtahahssvgskrfvssaaaatpvskhtsgtapstptrlvssgcstpssfTQSSSIQQQQQQNPVHTYTLFAVVNHFGH-AGYGHYTAYIRDVWqsP-EnprsKQWFKADDSSV 721
                  033333333333339**********99988877778*********************************..5589********************************************************************8888888888999****************.99*********765552.2456689******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       519  (0.0379608); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:01.05
# Mc/sec: 1871.44
//
Query:       MMETSP0890-20130614|34045_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.8   0.5      0.066   13.5   0.0    2.6  2  PF13174.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.8e-06     0.066       2      29 ..      20      48 ..      19      49 .. 0.96
   2 ?   -2.8   0.1      0.77     1e+04      16      24 ..     286     294 ..     279     295 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.8e-06
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
    PF13174.1  2 Alyklalsyyk.lgdtdeAlealerlike 29
                 Al++la++ ++  +d++ A+e+ + +ik+
  MMETSP0890-20130614|34045_1 20 ALLLLARCEDEfKKDKRLAIETAQTVIKN 48
                 9**********9***************97 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.77
                  HHHHHHHHH CS
    PF13174.1  16 tdeAleale 24 
                   d+Al++++
  MMETSP0890-20130614|34045_1 286 LDQALAIFD 294
                  578888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.83
# Mc/sec: 1328.10
//
Query:       MMETSP0890-20130614|34051_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       867  (0.0634143); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 1005.68
//
Query:       MMETSP0890-20130614|34052_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-71  239.6   0.0    5.5e-71  239.2   0.0    1.2  1  PF00632.20 HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> PF00632.20  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.2   0.0     4e-75   5.5e-71      45     315 ..     463     735 ..     381     736 .] 0.86

  Alignments for each domain:
  == domain 1    score: 239.2 bits;  conditional E-value: 4e-75
                  HHHHH-------TTT--------B-HHHHHHHT.T----.CCHHHTT-HHHHHHHHHHH..HS--GG.......G.T-BSEE.EEE----EEEEES-------B--TTTHHHHHHHHHHHHHTGGGHHHHHHHH---TTTS.-HHHHTTS-HHHHHHHH-----.--HHHHHHTEEEE----TTSHHHHHHHHHHHTS-HHHHHHHHHHH----S------TT----EEEEE--.-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHT.----- CS
   PF00632.20  45 klfkflGkligkaiyegilldlpfsraflkflllgkkvt.ledleeidpelanslkellelesstea....vedl.altFtieedkkedeielvelipnGanipVtnenkeeYiklyvnyllkesvkkqleafrkGfsevi.ptealklftpeelellicGsdklidvedlrrnteydggynansptienlweilkefspeerrlfLkFvTGssrlPlgGfaelhpkftivrksededrLPtasTCfnyLkLpdYsskeilkekLltAieegqegFel 315
                     +++G+l+g ai++ il++ pf+++++k+ll+   v+ +edle+  p +a+sl+ l +    +++     e++ +ltF ++ ++++++++ v+l+p+G ++ Vt en+++Yi+ y n+++++sv+ +++af++Gf  v+   +  +l++p++lell+ Gs++ +d++ l++n+ y+ gyn++spti  +w+++k+++ + + ++LkFvTG++r P++G+ +   kf i+r+     +LP+++TCf++L LpdY++ +il++kLl+A++e++egF+l
  MMETSP0890-20130614|34052_1 463 MSAELVGILLGVAIHNAILVEAPFAKMLWKKLLDPLTVAnIEDLEDAAPAIARSLRALHTSA-RIDDaftfQEKFgDLTFRVGYEDASGKAQSVDLVPDGDHVFVTVENVNQYIRAYLNWYFDTSVASPFAAFKRGFDRVVeAGDVWRLLEPNDLELLVRGSST-LDFDALEANALYQDGYNEHSPTIVHFWQVVKSLDHDSKLKLLKFVTGTDRAPISGLGAA--KFIISRSG-AVHQLPSSHTCFSHLVLPDYNDIDILRKKLLIALSESSEGFGL 735
                  33589****************************4455555******************9554.4444577666669*****999999999999************************************************4467778****************.9********************************************************98..********.8888*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:01.00
# Mc/sec: 1763.72
//
Query:       MMETSP0890-20130614|34057_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-06   25.1   0.1    7.2e-06   24.8   0.1    1.2  1  PF02144.11 Repair protein Rad1/Rec1/Rad17


Domain annotation for each model (and alignments):
>> PF02144.11  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   5.3e-10   7.2e-06      72     159 ..       4      73 ..       1      87 [. 0.89

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 5.3e-10
   PF02144.11  72 deeeesvsfeisLsallecLnifgkadssskeasssrapkvasssakatscklsYkgeGsPLvliLeeagvtttcelsTyepeedldl 159
                  +e+ees++++++  al+ecL++ g++ ++++                  +++lsYk   +  +l+Lee g+ ttc+l  ++++ d ++
  MMETSP0890-20130614|34057_1   4 EENEESIRLSVDAVALVECLQLLGSTLNDER------------------TITLSYKASEAVVKLTLEEFGIFTTCDLAALDMDVDIEI 73 
                  678999********************99875..................9*****************************999966655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 310.12
//
Query:       MMETSP0890-20130614|34054_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       969  (0.0708748); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:01.06
# Mc/sec: 1164.27
//
Query:       MMETSP0890-20130614|34067_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   14.4   0.0         16    5.0   0.0    3.7  4  PF00806.14 Pumilio-family RNA binding repeat
      0.096   12.2   0.1       0.23   11.0   0.1    1.6  1  PF00364.17 Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> PF00806.14  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0024        16       9      23 ..      20      34 ..      15      40 .. 0.89
   2 ?   -1.3   0.0      0.24   1.7e+03      16      30 ..     187     200 ..     186     203 .. 0.70
   3 ?    4.3   0.0    0.0039        27      15      27 ..     254     265 ..     251     268 .. 0.81
   4 ?   -3.2   0.0         1   6.8e+03      12      22 ..     339     349 ..     338     350 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0024
   PF00806.14  9 LstdqyGnyvvQkll 23
                 L+ +++ ++v+Q ll
  MMETSP0890-20130614|34067_1 20 LARHRHSSHVLQSLL 34
                 789*********887 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.24
   PF00806.14  16 nyvvQkllehateeq 30 
                  +++v+++le ++ ++
  MMETSP0890-20130614|34067_1 187 TRLVETVLE-LDNTD 200
                  799*****9.44444 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0039
   PF00806.14  15 GnyvvQkllehat 27 
                   nyv+Q+ll  at
  MMETSP0890-20130614|34067_1 254 SNYVLQTLLR-AT 265
                  6********8.55 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 1
   PF00806.14  12 dqyGnyvvQkl 22 
                  + yG++++  +
  MMETSP0890-20130614|34067_1 339 HEYGARALSAC 349
                  89***998555 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.4e-05      0.23      27      55 ..     226     254 ..     218     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.4e-05
                  ---CTSEEEEEESSSSEEEEEBS----EE CS
   PF00364.17  27 kVkagqvlaeveamKmemeieapkaGvvk 55 
                  kV+++   a+v+ mK+++ i+a +aG v+
  MMETSP0890-20130614|34067_1 226 KVSEDIRFAIVQKMKTQNRISAYVAGNVS 254
                  678888899*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       657  (0.0480544); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.73
# Mc/sec: 1720.12
//
Query:       MMETSP0890-20130614|34084_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   18.5   0.0     0.0012   18.3   0.0    1.1  1  PF13847.1 Methyltransferase domain
      0.002   18.4   0.0      0.003   17.8   0.0    1.3  1  PF08241.7 Methyltransferase domain
  ------ inclusion threshold ------
      0.017   15.4   0.0      0.026   14.8   0.0    1.3  1  PF08242.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-07    0.0012      48     113 ..      12      79 ..       8     121 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.6e-07
    PF13847.1  48 aqklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivesps...l 113
                  aqklg++ v F +++ ++++  le + fD  is +++ +  dp  ++  + + l+p+g++++++p    +
  MMETSP0890-20130614|34084_1  12 AQKLGLT-VDFVKENENKIPL-LEpSNFDAAISVGAVKRAHDPIVFVDTVLKSLRPDGKFYLVEPGvsdV 79 
                  899***9.************7.46799*************************************994441 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.6e-07     0.003      44      94 ..      17      70 ..       3      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.6e-07
    PF08241.7 44 le..lvvadaeelpfe.dnsfDvvvssevlehledpekalkeiaRvLkpgGllv 94
                 l+  +v+++  ++p+   ++fD+ +s+ +++  +dp  +++ + + L+p+G+++
  MMETSP0890-20130614|34084_1 17 LTvdFVKENENKIPLLePSNFDAAISVGAVKRAHDPIVFVDTVLKSLRPDGKFY 70
                 3355999999999987588*********************************98 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.8e-06     0.026      48      99 .]      19      69 ..       8      69 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.8e-06
    PF08242.7 48 nnnvnlealdlldldggssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99
                 +++v+ +++++  l ++s fD++++ +++  + d+  ++d + k L+p+G++
  MMETSP0890-20130614|34084_1 19 VDFVKENENKIPLL-EPSNFDAAISVGAVKRAHDPIVFVDTVLKSLRPDGKF 69
                 44555555554444.447********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.72
# Mc/sec: 422.69
//
Query:       MMETSP0890-20130614|34078_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-23   83.0   0.0    4.7e-23   81.5   0.0    1.7  1  PF01266.19 FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.013   15.3   0.0        0.3   10.7   0.0    2.2  2  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
      0.034   14.0   0.0        2.2    8.1   0.0    2.3  2  PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
       0.08   11.7   0.0       0.15   10.8   0.0    1.4  1  PF03435.13 Saccharopine dehydrogenase


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   1.4e-26   4.7e-23       1     356 [.       8     416 ..       8     418 .. 0.72

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 1.4e-26
                  EEEEE----HHHHHHHHHHH..TT-EEEEEESSSTTS....SCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHHHHHTSSTSBBCCEHCEEECSSHHHHHHHHHHHHHHCHTTTTEEEE-HHHHHHHSTTBT.TTT--..............................EEE.ETTEEEEEHHHHHHHHHHHHHHG--EEEESEEEEEEEEETTCEE.EEEEES..EEEEEEEE----THHHHHCCGTCCT.........TEEEEEEEEEEEE-TCCHSCCCEEE.........EEEEECGGTSEEEEEETTEEEE-EEE.SCEEESCBHHHH.HHHC................CTHHHHHHHHHHHHHHSGGG...........GGSEEEEEEEEEEEEETTSCSBEEEBTTETTEEEEE--G----TTTTTHHHHHH CS
   PF01266.19   1 dvviiGgGivGlstAyeLar..rglkVtllekgdias....gaSgrngglihagllkerdprllrlalesldllrelaaetgidvdfrrtgvldlasdeeeleelerlaerarangldvellsaeevrereplls.pdlkg..............................glf.ypddgqvdpaklvkalaraaeelGveiiegtkVtglereggrvsgvetedgs.iradkvvlAaGawsskllkllgldl.........pirpvrgqvlvtepltdelaaavil.........gpvavldargvfvlpregevlvgttd.grldrgataeessgedv................dvdlevdelleaaakllpql...........kdaeilrawaGlrpvtpdglpvigevpevpglyvatGhsghGftlapaaGklla 356
                  d +++G G +G+++A +L r   +++++l+  ++  +          ++++++    + d+++++la +s+  + e+++e gi++++ ++g l +         l++  + a ++g++++ ls++e++  +p l+ +  +                               +l+ +  +g++ p  +++a +  + +lG++++ g  V++l ++++ ++ v +  g+ i a+kv +A++aw++  ++ll+++l         + r vr++ + +++         i+            ++l  + +++lp+        +d ++ +   ++   ++                   + d+    ++ ++++ll +l           ++ + +    +++p tp+  p++      +gl+ + G++g + +++  +G+l a
  MMETSP0890-20130614|34078_1   8 DFAVVGNGLIGSAAAKYLVRqtGDADIVLIGPERREEskifDCHDDEARICRRL---DVDDVWAELATRSMARYNEIQKESGIQFHY-PCGCLAVG--RRGGTYLNAVSACAARQGVPLKALSEAELKSHWPELRlDATLLrdfdersddkkgcsthfveesdeekhieyaALYeEGPAGHISPTNFLRAQLLLFTRLGGHYVHG-VVERLSKDDDCWK-VDLGAGKnIFAKKVLVATNAWTNF-RPLLKHKLaltlttqtaMRRRVRSSNIKIPA---------IIvragsnqfgSSASFL--DACYFLPPV------NYDnDDQWVKIGHGTYFERPLaseeeaiawyqgyeaeRADC---YARCDLSALLQRLcgnliikdndfTKPHTI-PIKCVIPKTPSKRPYLAYF--DQGLVACVGCNGYAAKSSDELGRLSA 416
                  789*****************75556*******988886777666999*******...7777*************************8.********..7777777889999999*****************7777642222344445555555555555566666666665566345589*************************.************9.******99***************9.****998844444443322333333333333.........22233333333222233..456666666......55544444444444443211122222222222222224445...556666666666666678866665444444.255***********99998..99****************99999876 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.9e-05       0.3       1      29 [.       8      42 ..       8      99 .. 0.81
   2 ?    2.5   0.0     0.029        99      94     147 ..     214     264 ..     139     349 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.9e-05
                 SEEEE----HHHHHHHHHH..HTTSEEEEE....C CS
                 xxxxxxxxxxxxxxxxxxx..xxxxxxxxx....x RF
    PF07992.9  1 dvviiGgGpaGlsaakdla..qkglkvali....e 29
                 d +++G+G  G +aak+l     +++++li     
  MMETSP0890-20130614|34078_1  8 DFAVVGNGLIGSAAAKYLVrqTGDADIVLIgperR 42
                 579****************6655677777766430 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.029
                  EEEEEEEEETEEEEEEESEEEE----B.----TGCCHTEEEC.SSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07992.9  94 agavkadekgkgrdikydklviAtGar.prtlgipgvevailargvedsdeilel 147
                  + +  +++ g+g+ i ++k+++At a+ ++++ ++    + la ++ + ++++++
  MMETSP0890-20130614|34078_1 214 DDDCWKVDLGAGKNIFAKKVLVATNAWtNFRPLLK----HKLALTLTTQTAMRRR 264
                  334555677888889********998833333333....2333345555555554 PP

>> PF13738.1  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.016        53       1      29 [.      10      39 ..      10      47 .. 0.83
   2 ?    8.1   0.0   0.00063       2.2     103     147 ..     206     250 ..     186     298 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.016
    PF13738.1  1 lVvGAGaaGlafadnl.leegatpliivDr 29
                 +VvG G++G a+a +l +++g+++++++ +
  MMETSP0890-20130614|34078_1 10 AVVGNGLIGSAAAKYLvRQTGDADIVLIGP 39
                 69***********77747779999998865 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00063
    PF13738.1 103 trvteveregdrfevrvtdgrevrakalvlatgavskpktlglpg 147
                  + v++ + ++d ++v++  g+++ ak++++at a+ + ++l  ++
  MMETSP0890-20130614|34078_1 206 GVVERLSKDDDCWKVDLGAGKNIFAKKVLVATNAWTNFRPLLKHK 250
                  446677888899*****9999*************98877654444 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.5e-05      0.15       3      61 ..      11      70 ..       9      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.5e-05
   PF03435.13  3 vlGaGsvGqavaellarhgdvdeitvadrtlekaqalaakalglrveaialdvsnyea.L 61
                 v+G G +G+a+a++l+r+   ++i+++++++++  ++ +    +  +++ ldv+++ a L
  MMETSP0890-20130614|34078_1 11 VVGNGLIGSAAAKYLVRQTGDADIVLIGPERREESKIFDCHDDEARICRRLDVDDVWAeL 70
                 89****************9988***********999999888888889999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.45s 00:00:01.26 Elapsed: 00:00:00.95
# Mc/sec: 1165.39
//
Query:       MMETSP0890-20130614|34102_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.73
# Mc/sec: 1125.96
//
Query:       MMETSP0890-20130614|34108_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   15.0   1.6     0.0079   15.0   1.1    1.0  1  PF12037.3 Domain of unknown function (DUF3523)
  ------ inclusion threshold ------
       0.14   11.0   0.3       0.15   10.8   0.2    1.0  1  PF07091.6 Ribosomal RNA methyltransferase (FmrO)


Domain annotation for each model (and alignments):
>> PF12037.3  Domain of unknown function (DUF3523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.1   1.2e-06    0.0079     129     171 ..       5      47 ..       2      52 .] 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-06
    PF12037.3 129 rqneellkkQeesvlrqEeiRratEeeilekkreqieeeaeLe 171
                  ++n+e+l++Qees+ ++E  R +  +++l  + +++ + a L+
  MMETSP0890-20130614|34108_1   5 EMNDEMLSEQEESISKKEDERANKKRRVLTAHGSSSIRVAILK 47 
                  58*********************99999998877776666666 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   2.2e-05      0.15      56      93 ..      11      47 ..       3      49 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.2e-05
    PF07091.6 56 lkklea.aleaedeeavraalkrllalHaStrERlpvld 93
                 l + e+   + ede+a  +  +r+l +H S+  R+++l+
  MMETSP0890-20130614|34108_1 11 LSEQEEsISKKEDERA--NKKRRVLTAHGSSSIRVAILK 47
                 3333441344445444..55689*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      505  (0.0369368); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 197.79
//
Query:       MMETSP0890-20130614|34103_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-77  256.6   0.1    1.2e-76  256.3   0.0    1.1  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.3   0.0   8.6e-81   1.2e-76       5     181 ..      70     246 ..      66     247 .. 0.98

  Alignments for each domain:
  == domain 1    score: 256.3 bits;  conditional E-value: 8.6e-81
   PF00574.18   5 ravdiysrllkeriiflgeevddevankivaqLlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevles 181
                  + +d+ srllk+ri+ lg+ev+devan +vaq+l+L ++++ +di+lyinSpGGsv+ag+aIydt++fi++dvst+c+G+aaSm++++l +G+ gkR +lpnarimihqPlggaqgqasdiei+a+el+ +k+ +n+++++ tgqs+eki++d+drd+++ ++eA+eyGliDev+++
  MMETSP0890-20130614|34103_1  70 EQIDVLSRLLKDRILLLGSEVNDEVANVLVAQMLYLANQSPYEDITLYINSPGGSVSAGMAIYDTMQFIPCDVSTVCFGMAASMGAFLLGSGTRGKRKSLPNARIMIHQPLGGAQGQASDIEIQAKELLFTKACINKYMSDYTGQSIEKIAEDTDRDFYMMPNEALEYGLIDEVIKT 246
                  4699**************************************************************************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.70
# Mc/sec: 920.89
//
Query:       MMETSP0890-20130614|34101_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-29  101.9   3.9    3.3e-29  101.3   2.7    1.3  1  PF01595.15 Domain of unknown function DUF21
    1.2e-22   79.1   1.0    1.5e-11   43.6   0.0    2.4  2  PF00571.23 CBS domain
    8.2e-09   35.0   0.0    4.9e-08   32.5   0.0    2.3  2  PF03471.12 Transporter associated domain


Domain annotation for each model (and alignments):
>> PF01595.15  Domain of unknown function DUF21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   2.7   7.2e-33   3.3e-29       3     180 ..       3     184 ..       1     187 [. 0.95

  Alignments for each domain:
  == domain 1    score: 101.3 bits;  conditional E-value: 7.2e-33
   PF01595.15   3 lliivlllllsaffsaaEtAlvslsrsrleelaeegnkkakrllkllknperllatlllgntlanillgalatlalaellgel.lavllavlvltllilvfgEilPktlalrnperialllapplrvllkllyPlvwllsklanlllrllgvkp....eeepavteeelralveeseeegvle 180
                  l+  ++l ++s+ + aaE+A+++l + +++ela+e  k++    k+++n++r ++++l+  t+++++ ++lat++++ l++++  ++++a++ l++++++fgE+lPkt+++  +e ia++  p ++ l ++l P+   +sk a +l+  +g k     + ++av+e elr lv+++ ++g l+
  MMETSP0890-20130614|34101_1   3 LIGWAVLFCISSTVHAAEIAITTLWPWKVRELADEEGKNSP-FAKIVDNLTRHMTAMLVASTVCTVVGTTLATTVITGLFADSpRQLAFATFGLAAITIFFGELLPKTVGVYCAEGIARFAIPYISALAYVLAPIGTAFSKAATVLVAPFGLKYsddaAANSAVSEGELRLLVAAAGQSGSLS 184
                  8899*****************************99665555.889************************************999***********************************************************************99999*******************9875 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   3.3e-12   1.5e-08       1      53 [.     202     257 ..     202     260 .. 0.96
   2 !   43.6   0.0   3.4e-15   1.5e-11       9      56 ..     316     363 ..     304     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 3.3e-12
                  HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEEEEET.TEB---EEHHHHHH CS
   PF00571.23   1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpVvDed.grlvGiitlrDllk 53 
                  v+++mt+  dv+++++  tl++a+++l + ++srlpV + d +++ G+++ + l+k
  MMETSP0890-20130614|34101_1 202 VSEVMTPrvDVIAIDEAKTLDQAVDLLTESKHSRLPVFSTDiDNITGVVLAKSLIK 257
                  89************************************8889**********9998 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 3.4e-15
                  CCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHHH CS
   PF00571.23   9 vvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkall 56 
                    ++p+++t+  ale +r+++ + ++VvDe+g  +Gi+tl+D+l+ ++
  MMETSP0890-20130614|34101_1 316 TYFIPESMTVWAALEAMRRRRCHLAVVVDEYGGTAGIVTLEDILEEIV 363
                  5689****************************************9875 PP

>> PF03471.12  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.45   2.1e+03       7      20 ..     397     410 ..     395     420 .. 0.83
   2 !   32.5   0.0   1.1e-11   4.9e-08      27      76 ..     469     518 ..     462     522 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.45
                  EEEE----BHHHHH CS
   PF03471.12   7 sylvdGrapldele 20 
                  ++ + G+a+ld++ 
  MMETSP0890-20130614|34101_1 397 KFAIRGEADLDDVR 410
                  68899*******97 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.1e-11
                  ----..--SB----HHHHH-S------EEEEEETTEEEEEEEEETTCEEEEE CS
   PF03471.12  27 lpee..dyeTlgGlvlellgriPeegesvevdleglrfeVlevdgrrikkvr 76 
                  l+ e  d+ Tl+G+++   g iP+e +   +++ g++f V+++d+rr+k+v 
  MMETSP0890-20130614|34101_1 469 LDGEpfDCVTLSGFLCAVHGEIPKEAD--IIRHSGVTFNVTQADERRVKEVL 518
                  555533566******************..66666****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.45s 00:00:01.41 Elapsed: 00:00:01.30
# Mc/sec: 1004.63
//
Query:       MMETSP0890-20130614|34113_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       660  (0.0482738); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.99
# Mc/sec: 895.61
//
Query:       MMETSP0890-20130614|34122_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-59  199.1   2.1    6.3e-59  198.9   1.4    1.1  1  PF01988.14 VIT family
  ------ inclusion threshold ------
       0.14   11.4   8.6      0.034   13.4   2.4    2.2  2  PF07698.6  7TM receptor with intracellular HD hydrolase
       0.38   10.3   6.0        7.9    6.0   4.6    2.2  2  PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
        1.1    8.2   8.8       0.11   11.4   2.9    1.6  2  PF04018.8  Domain of unknown function (DUF368)


Domain annotation for each model (and alignments):
>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   1.4   1.8e-62   6.3e-59       1     213 []      46     271 ..      46     271 .. 0.95

  Alignments for each domain:
  == domain 1    score: 198.9 bits;  conditional E-value: 1.8e-62
   PF01988.14   1 ilraaVlGlnDGlvstfalvaGlagaaassklvllaGlaglvAgaiSmalGeylsvkaerdleeaelereqqeverspegeveeladilkak.glseetaaqvaeeltakeda.ldfllkeelglee...estsrplkaaltsglsfllggliPllpyllvp.sas........eallvsvivtllaLfllGvvkarvsgksylrsalrtliigllaaaatyllgrl 213
                  i++++++G++DG+++tfa+va++aga+ s   v+l+G+a+l+A++iSm+lG+yls+ ae+   + e +re++ev++++ege+ e+ +i+  k g+s+++a+ v+++++++++a ++++  +elg+     ++   ++k +l+++++f+++g +P+l +++++   +          ++++ i+t++++f+lGv ka +++++ + s++ +l++g++aaaa++++g+l
  MMETSP0890-20130614|34122_1  46 IVKSLIFGGLDGIITTFAIVAAVAGAGLSENSVILLGVANLIADGISMGLGDYLSEIAEQNFVRHEFKRERWEVDNYLEGEIREMCEIYTMKkGFSQQDAESVMRIFAKYPKAfVELMCVDELGFIApndSEDFPAYKKGLVTFFAFIFFGSVPVLIFIFAKaV-PksqrpdksLLFIIATIATAFTMFALGVTKASFTKQNKMQSGFMMLLNGACAAAAAFGIGYL 271
                  5899*********************999*************************************************************9999*********************************9875555599************************9751.2456789989999***********************************************86 PP

>> PF07698.6  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.13   4.5e+02     159     178 ..      44      63 ..      29      87 .. 0.70
   2 ?   13.4   2.4   9.8e-06     0.034     124     191 ..     211     277 ..     183     278 .] 0.70

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.13
    PF07698.6 159 leillslvlafisgllsail 178
                   ei++sl+++ + g+++   
  MMETSP0890-20130614|34122_1  44 GEIVKSLIFGGLDGIITTFA 63 
                  47777777777777777532 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.8e-06
    PF07698.6 124 lrsRsqllragllvalvnllvilalglisssnlswleillslvlafisgllsailaigllPllEslFg 191
                   ++R +  ++ +  +++ +++++alg+ + +++++++ ++s ++++++g  +a  a g+ +llEs+ +
  MMETSP0890-20130614|34122_1 211 KSQRPDKSLLFIIATIATAFTMFALGVTK-ASFTKQNKMQSGFMMLLNGACAAAAAFGIGYLLESVLN 277
                  34555555555555666667777777655.56699******************************987 PP

>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.073   2.5e+02      80     115 ..      58      93 ..       9     126 .. 0.70
   2 ?    6.0   4.6    0.0023       7.9      70     112 ..     219     265 ..     185     276 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.073
    PF13903.1  80 vlillaavlallaslkksktlllltgvllllagili 115
                  +   +a+v+a++++   ++ ++ll + +l++ gi++
  MMETSP0890-20130614|34122_1  58 IITTFAIVAAVAGAGLSENSVILLGVANLIADGISM 93 
                  556677777777777777777777777777666654 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0023
    PF13903.1  70 vvivflllglvlillaavlallaslkksk....tlllltgvllllag 112
                  +  +++++++++ ++a+ ++ +++ k++k    +++ll+g + ++a+
  MMETSP0890-20130614|34122_1 219 LLFIIATIATAFTMFALGVTKASFTKQNKmqsgFMMLLNGACAAAAA 265
                  45668999********************9999966666655555443 PP

>> PF04018.8  Domain of unknown function (DUF368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.51   1.8e+03      68      75 ..      58      65 ..      27      94 .. 0.49
   2 ?   11.4   2.9   3.3e-05      0.11      86     155 ..     190     264 ..     181     266 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.51
    PF04018.8 68 illlskli 75
                 i+++  ++
  MMETSP0890-20130614|34122_1 58 IITTFAIV 65
                 22222221 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 3.3e-05
    PF04018.8  86 tlsfFlGlilasvvvlikevkk.ksllkilllllglviallltl....lssatakksleetllvlfiaGaiaica 155
                    ++F+G + + +++ +k v k +++ k ll+++++++++++++    ++++ +k++  ++ +++++ Ga+a++a
  MMETSP0890-20130614|34122_1 190 FAFIFFGSVPVLIFIFAKAVPKsQRPDKSLLFIIATIATAFTMFalgvTKASFTKQNKMQSGFMMLLNGACAAAA 264
                  567899999999999999987746667777777777777776666777666667788889999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       608  (0.0444705); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 843.27
//
Query:       MMETSP0890-20130614|34131_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   13.2   0.1        0.1   12.6   0.1    1.3  1  PF10731.4 Thrombin inhibitor from mosquito


Domain annotation for each model (and alignments):
>> PF10731.4  Thrombin inhibitor from mosquito
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.4e-06       0.1      11      42 ..      25      55 ..      23      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.4e-06
    PF10731.4 11 LCvaLvavvqsAPqYarGdePtYDEdddddek 42
                 L  + ++ v +AP  a    P+YDE d+dd++
  MMETSP0890-20130614|34131_1 25 LSTVHAVAVTAAPMLAA-ATPKYDEYDEDDDE 55
                 66677778999**9997.58****99988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.48s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 681.32
//
Query:       MMETSP0890-20130614|34124_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.39s 00:00:01.17 Elapsed: 00:00:00.70
# Mc/sec: 1715.11
//
Query:       MMETSP0890-20130614|34137_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 756.35
//
Query:       MMETSP0890-20130614|34132_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-06   25.1  19.4      0.019   14.2   0.4    3.4  3  PF09802.4 Preprotein translocase subunit Sec66


Domain annotation for each model (and alignments):
>> PF09802.4  Preprotein translocase subunit Sec66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   5.3   5.4e-06     0.074      74     175 ..      23     125 ..       4     143 .. 0.75
   2 !    5.7   0.1   0.00055       7.6      28      61 ..     182     215 ..     178     257 .. 0.75
   3 !   14.2   0.4   1.4e-06     0.019      72     137 ..     411     476 ..     371     514 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.4e-06
    PF09802.4  74 lkaaLLrRavEairRiiklkeakpalekLyqnGsvgddlwqrfqraeKlveeElkdvvqEaealkpgWvqtifqsakEi..vfNealrrrleeiqerkeeekel 175
                  l+ aL+ R+   +  +++l  ++  ++ + ++G v    +  f + + l++ E+++v +Ea  l ++ +++  q a+Ei  ++ ++ ++r +++q  ++++ ++
  MMETSP0890-20130614|34132_1  23 LRHALMDRCQSHVVWLLRLEREQRSMDRMSRRGMVSAADYAAFSHFAELLDAEVNEVRAEAAWLSDDEAKS-RQAAEEIwrIAVQIWHQRQQQQQVSQQDQLKE 125
                  899**********************************************************9999887665.57777773323444555544443333322222 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00055
    PF09802.4  28 RkrkakklaelepifdeheardlYlslkeleeee 61 
                  +k++  ++++ +pi ++  +r++Y ++k+ + e 
  MMETSP0890-20130614|34132_1 182 KKEQRFQTTQWPPILPNARQREIYERMKKDAIET 215
                  57778889999****************9986554 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 1.4e-06
    PF09802.4  72 kvlkaaLLrRavEairRiiklkeakpalekLyqnGsvgddlwqrfqraeKlveeElkdvvqEaeal 137
                  k +++aL+ R+   +  ii+l  ++   ++  ++G v ++ +q+f++ e  v  E++ v qEa   
  MMETSP0890-20130614|34132_1 411 KQFRSALMLRCQQLVPLIIRLDLEARGTHMAAEKGHVPENEYQQFKQLEDTVKHEMQLVKQEAAWI 476
                  56799*********************************************************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1741  (0.127341); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:01.31
# Mc/sec: 962.20
//
Query:       MMETSP0890-20130614|34147_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       577  (0.042203); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 513.51
//
Query:       MMETSP0890-20130614|34143_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-07   30.9   0.0    3.6e-07   30.0   0.0    1.5  1  PF11697.3  Protein of unknown function (DUF3293)
  ------ inclusion threshold ------
       0.12   12.1   0.1       0.24   11.1   0.1    1.4  1  PF01111.14 Cyclin-dependent kinase regulatory subunit


Domain annotation for each model (and alignments):
>> PF11697.3  Protein of unknown function (DUF3293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.3e-11   3.6e-07       1      73 []      82     164 ..      82     164 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 5.3e-11
    PF11697.3   1 ITAwNPasralsaeeNaernaaLerel.....aalglkavegigedpdgsWrEeSflvlgldle.....eavaLgrkFeQnAi 73 
                  +TA+ P + ++s++eN++ n ++++el      ++  +++++ g d ++ WrE++f + + + +     + + +++ F+Q Ai
  MMETSP0890-20130614|34143_1  82 LTAFDPPGVTRSRSENMATNIQMWEELkkkhlLNRASHVWRAFGCDLNEGWREDGFVLQFDSDTdrarnDILSIAAIFDQGAI 164
                  5*************************94433334556777889999999********98777666666677789999999998 PP

>> PF01111.14  Cyclin-dependent kinase regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.5e-05      0.24      24      51 ..     104     133 ..      99     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.5e-05
   PF01111.14  24 iakkipkdkllseee..wRaLGiqqskGWv 51 
                  + ++++k++ll+     wRa G ++++GW 
  MMETSP0890-20130614|34143_1 104 MWEELKKKHLLNRAShvWRAFGCDLNEGWR 133
                  6788999****987666************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.63
# Mc/sec: 829.22
//
Query:       MMETSP0890-20130614|34148_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-26   92.1   0.0    3.8e-26   91.8   0.0    1.1  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase
    2.7e-10   39.3   0.0    4.6e-10   38.6   0.0    1.4  1  PF02260.15 FATC domain


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   5.6e-30   3.8e-26     119     234 ..       2     114 ..       1     115 [. 0.98

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 5.6e-30
                  HHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------.----SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCCCCS--CCCC CS
   PF00454.22 119 rsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp.skheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdlltrlLqafveigllkwr 234
                  r  fars a ++ +++++g+gDRh+dNilvd + g++vh+Df++ ++ +  ++ pe vpfrlt+ ++e++    ++s+ +g+fr+ ++ +l +lr ++  l+++L+ f++++++ w+
  MMETSP0890-20130614|34148_1   2 RAVFARSAAAWAAVGHVVGLGDRHPDNILVDITVGECVHVDFDCLFDkGTSLRRPEVVPFRLTPHMVEAL----GISGVDGTFRTALHATLDILRNNKATLLNVLEPFLRDPTVGWT 114
                  5679******************************************************************....****************************************997 PP

>> PF02260.15  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   6.8e-14   4.6e-10       2      26 ..     190     214 ..     189     215 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 6.8e-14
   PF02260.15   2 pLsveqQVdrLIseAtspeNLaqmY 26 
                  pLsv +QV+rLI+eA+s  NL++mY
  MMETSP0890-20130614|34148_1 190 PLSVAGQVERLIDEASSELNLCRMY 214
                  9************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:00.55
# Mc/sec: 1097.97
//
Query:       MMETSP0890-20130614|34145_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.59
# Mc/sec: 942.30
//
Query:       MMETSP0890-20130614|34142_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   14.0   0.9       0.07   13.4   0.6    1.4  1  PF06678.6 Protein of unknown function (DUF1179)


Domain annotation for each model (and alignments):
>> PF06678.6  Protein of unknown function (DUF1179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   5.1e-06      0.07      63     107 ..     103     146 ..      89     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.1e-06
    PF06678.6  63 PvsqtpPaktPieksgkkaedtLanvkslppeksedadeaklkkk 107
                     + pP++ P+ + +++a+ tLa     + +k++d+ + ++k+k
  MMETSP0890-20130614|34142_1 103 ACFRVPPSSSPLAEQKNQADTTLAAFSTSEGRKDDDSTS-DMKTK 146
                  45689********************99977766655555.99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.53
# Mc/sec: 727.95
//
Query:       MMETSP0890-20130614|34160_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 1172.50
//
Query:       MMETSP0890-20130614|34163_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 1035.23
//
Query:       MMETSP0890-20130614|34157_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-31  106.5   0.0    8.1e-31  105.8   0.0    1.4  1  PF07109.6  Magnesium-protoporphyrin IX methyltransferase C-terminus
    9.2e-12   44.8   0.0    1.3e-11   44.3   0.0    1.2  1  PF13489.1  Methyltransferase domain
      1e-09   38.6   0.1    1.7e-09   37.8   0.1    1.3  1  PF08241.7  Methyltransferase domain
    2.2e-09   37.5   0.0    3.8e-09   36.8   0.0    1.4  1  PF08242.7  Methyltransferase domain
    2.5e-08   34.3   0.0    3.7e-08   33.7   0.0    1.4  1  PF12847.2  Methyltransferase domain
    2.8e-08   33.3   0.0    3.6e-08   33.0   0.0    1.2  1  PF13847.1  Methyltransferase domain
    4.2e-07   30.1   0.0      7e-07   29.4   0.0    1.4  1  PF13649.1  Methyltransferase domain
    5.2e-07   29.1   0.0    8.6e-07   28.3   0.0    1.3  1  PF05175.9  Methyltransferase small domain
    0.00022   20.3   0.1    0.00037   19.5   0.1    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase
    0.00067   19.2   0.0    0.00097   18.7   0.0    1.2  1  PF13679.1  Methyltransferase domain
     0.0014   17.7   0.3     0.0035   16.4   0.2    1.7  2  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0026   16.7   0.2     0.0036   16.3   0.2    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
     0.0033   16.4   0.1     0.0049   15.9   0.0    1.2  1  PF03848.9  Tellurite resistance protein TehB
     0.0033   16.3   0.1     0.0052   15.7   0.0    1.4  1  PF07091.6  Ribosomal RNA methyltransferase (FmrO)
     0.0085   14.8   0.0      0.011   14.4   0.0    1.2  1  PF05219.7  DREV methyltransferase
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.014   15.3   0.0    1.3  1  PF13659.1  Methyltransferase domain
      0.025   13.1   0.0      0.041   12.4   0.0    1.3  1  PF05958.6  tRNA (Uracil-5-)-methyltransferase
      0.042   13.3   0.4       0.16   11.4   0.2    2.0  2  PF05148.10 Hypothetical methyltransferase
       0.12   11.8   0.2       0.18   11.2   0.1    1.3  1  PF01170.13 Putative RNA methylase family UPF0020
       0.12   11.2   0.0       0.19   10.6   0.0    1.3  1  PF02390.12 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF07109.6  Magnesium-protoporphyrin IX methyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   1.2e-33   8.1e-31       1      97 []     173     269 ..     173     269 .. 0.99

  Alignments for each domain:
  == domain 1    score: 105.8 bits;  conditional E-value: 1.2e-33
    PF07109.6   1 alDvlIhYpaedaakvlshlasltkerivltfAPktallallkkiGklfprssrataiylhaekeleralselgwkiareervstgfyiskllelvr 97 
                  ++Dv+IhYp++ +++++++l+slt++r+ ++fAP+t+ l++lk+iG lfp++s++t++ylh+e+++e+al+++g+ ++r++ +st+fy+s l+e+v+
  MMETSP0890-20130614|34157_1 173 CIDVMIHYPTDTMVNLVNKLTSLTNDRLFVSFAPNTPQLSILKAIGGLFPGPSKTTRAYLHKEDDVEKALNDQGFIVKRRHLTSTNFYFSLLFEAVP 269
                  9*********************************************************************************************986 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.9e-14   1.3e-11      10     159 ..      92     249 ..      82     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 1.9e-14
    PF13489.1  10 adllerllarlkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk............akqaqksqfdeedaaepagkfdlivarevlehvp.d.peellrqiaellkpgGylllst.pnaslasdeafakwdylvprg....thisffsaeslkelleeaGfei 159
                   d++ +  +++k +g+++D+GcG G l+   a++g++v++ D+s a++ +            +++   +++      + +g++d++++++v+ h p d   +l++ + +l +    l++s  pn   ++ + ++ +  l p g    t  +++ +++++++l ++Gf +
  MMETSP0890-20130614|34157_1  92 IDKVLEWIDTEKVSGSWCDLGCGVGSLAIPVAQRGAQVYASDISAAMVTEtmqratdagislKSCETSDME------NVDGSYDTVSCIDVMIHYPtDtMVNLVNKLTSLTN--DRLFVSFaPNT--PQLSILKAIGGLFP-GpsktTRAYLHKEDDVEKALNDQGFIV 249
                  455555557799***********************************998999998888777666666666......7889**************95335566666666555..55555553664..56667777777665.445546668889999999999999987 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   2.5e-12   1.7e-09       2      73 ..     110     180 ..     109     194 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 2.5e-12
    PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehl 73 
                  d+GcG g+l+ ++a+r +a+v++ D+s++m+++  +r+++ g++l+     ++   d+s+D v +  v+ h 
  MMETSP0890-20130614|34157_1 110 DLGCGVGSLAIPVAQR-GAQVYASDISAAMVTETMQRATDAGISLKSCETSDMENVDGSYDTVSCIDVMIHY 180
                  9***************.***************************999999999888**********999887 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   5.5e-12   3.8e-09       2      91 ..     110     194 ..     109     199 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 5.5e-12
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl..kdirevldnirk 91 
                  ++GcG+Gsl+ +++++  +++++++Dis+++++++ ++  + +    ++ + + ++    dg  s+D+v +++v+ h   +++  +++++ +
  MMETSP0890-20130614|34157_1 110 DLGCGVGSLAIPVAQR--GAQVYASDISAAMVTETMQRATDAGISLKSCETSDMEN---VDG--SYDTVSCIDVMIHYptDTMVNLVNKLTS 194
                  89**************..**************777777777775444444444444...344..**********999766666666666655 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   5.5e-11   3.7e-08       4      79 ..     107     177 ..     105     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 5.5e-11
    PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsllerfDavllkg.l 79 
                  + +DlGcG+Gsl++  a+  +ga+v++ D+s++++    ++a     + +i+l+ ++ +  +++++ +D v + + +
  MMETSP0890-20130614|34157_1 107 SWCDLGCGVGSLAIPVAQ--RGAQVYASDISAAMVTETMQRA----TDAGISLKSCETSDMENVDGSYDTVSCIDvM 177
                  689***************..**********************....8999999998885557777779999886633 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   5.3e-11   3.6e-08       8      87 ..     109     181 ..     103     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 5.3e-11
    PF13847.1   8 lDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklleesfDlvisnevl..nala 87 
                  +DlGCG G l++  a++   ga+v+  Dis+ ++    +ra + g+   + + +d+e+++     s+D v + +v+  +  +
  MMETSP0890-20130614|34157_1 109 CDLGCGVGSLAIPVAQR---GAQVYASDISAAMVTETMQRATDAGISLKSCETSDMENVD----GSYDTVSCIDVMihY--P 181
                  8**************77...9**************************888888*******....99****999999541..3 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     1e-09     7e-07       2      98 ..     109     197 ..     108     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1e-09
    PF13649.1   2 ldlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlk 98 
                  +dlGCG G  +   +++      ++v+++Dis+ ++ ++ +r+++ g+  k +  +  +++  +g++d v c   ++ h+  + +++l+ ++ ++++
  MMETSP0890-20130614|34157_1 109 CDLGCGVGSLAIPVAQRG-----AQVYASDISAAMVTETMQRATDAGISLKSCETS--DMENVDGSYDTVSC-IDVMIHYPTDTMVNLVNKLTSLTN 197
                  7**************995.....9*******************8888666655444..7888899*******.566888899999999999888775 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.3e-09   8.6e-07      27     122 ..      99     192 ..      90     202 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.3e-09
                  S-TT.------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EEE.--------HHHHHHHHHH CS
    PF05175.9  27 lpkk.lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeveekkfdlivs.NPPfhagkatelevaerl 122
                  ++++  +g+  DlGcG+G l++ +a+++ +  v + Di+a+ v+ + + +++ +++ ++  ++  +e+v+ +++d++ +  + +h  ++t ++++++l
  MMETSP0890-20130614|34157_1  99 IDTEkVSGSWCDLGCGVGSLAIPVAQRGAQ--VYASDISAAMVTETMQRATDAGIS-LKSCETSDMENVD-GSYDTVSCiDVMIHYPTDTMVNLVNKL 192
                  555558999*******************99..***********************9.7777777778998.999999653566666666666666665 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   5.3e-07   0.00037      67     154 ..     109     194 ..      81     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.3e-07
                  EE-------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SSS-B---B---TT-----SEEEE---GGGT--TCHHHHHHHHHH CS
   PF02353.15  67 LdiGcGWGslvrraverydvkvvglTlSkeqaklakqrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkk 154
                   d+GcG Gsl++  ++r +++v +  +S+     + qr  +++++  ++ + +d e++d+ +d v+ ++++ h  ++   + ++kl++
  MMETSP0890-20130614|34157_1 109 CDLGCGVGSLAIPVAQR-GAQVYASDISAAMVTETMQRATDAGIS-LKSCETSDMENVDGSYDTVSCIDVMIHYPTDTMVNLVNKLTS 194
                  69***************.************************965.6789********************999888877777766665 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06   0.00097      11      93 ..      90     165 ..      82     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.4e-06
    PF13679.1  11 elveklvkeaakeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiae 93 
                  + ++k+++ + +e+ s + +D+G+G g La  +a+       + +v++ d+++++v++++++a++ g ++ ks++++++++ +
  MMETSP0890-20130614|34157_1  90 QTIDKVLEWIDTEKVSGSWCDLGCGVGSLAIPVAQ------RGAQVYASDISAAMVTETMQRATDAGISL-KSCETSDMENVD 165
                  568888888888999999**************999......599***********************777.888888776544 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   1.5e+03      24      66 ..      20      62 ..      14      79 .. 0.68
   2 !   16.4   0.2   5.1e-06    0.0035     143     211 ..      87     153 ..      85     196 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.2
    PF06325.8 24 lgakgvaiedsk.lleerdifepkleeesllkevkvkalfkeet 66
                 l+a++vai  +  ++    ++ +  + e++ ++ +v+++f+ et
  MMETSP0890-20130614|34157_1 20 LDASTVAIPVAGlVVGAATLL-SPSDREKIDDKKEVESYFNGET 62
                 566666666666455555555.3455666788899999998776 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 5.1e-06
    PF06325.8 143 GtHpTTklclealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea 211
                  G+ +T    le++++  k   +  D+G+G G Lai +a+ ga+ v+a Di    v+ + + a   +++ 
  MMETSP0890-20130614|34157_1  87 GHQQTIDKVLEWIDTE-KVSGSWCDLGCGVGSLAIPVAQRGAQ-VYASDISAAMVTETMQRATDAGISL 153
                  7778888889999875.5556789*****************95.9******999998887776666655 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   5.3e-06    0.0036      14     121 ..      68     172 ..      62     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.3e-06
   PF01209.13  14 esvaskyDlmndv...lslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvt 121
                  ++++s+ D +n v   + +g  +   k +e ++++k + +  D+ +G g la+ +++   +  +v   Di++ m+ ++ +++ + g     +   ++ +++  d+s+D+v 
  MMETSP0890-20130614|34157_1  68 NKIYSDTDDVNGVqkdIRVGHQQTIDKVLEWIDTEKVSGSWCDLGCGVGSLAIPVAQ---RGAQVYASDISAAMVTETMQRATDAGI---SLKSCETSDMENVDGSYDTVS 172
                  678888888888744455665556666777789999999*************98765...456899*****************9995...566677777788888888764 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-06    0.0049      22     124 ..      95     197 ..      84     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.2e-06
                  HHHHTTTS-.---EEE-------HHHHHHH----EEEEES-HHHHHHHHHHHHHTT-TEEE.EE--GGG------BSEEEEES-GGGS-GGG----HHHHHHTB- CS
    PF03848.9  22 vleavkvvk.pgkaldlGcGqGrnslflsllgydvtavdkneasiailqeiaekenldlka.alydinaasldeeydfilstvvlmflqaeripeiianmqektk 124
                  vle +++ k  g   dlGcG G  ++ ++++g +v a d ++a ++   + a    ++lk+ ++ d+   ++d +yd +    v++   ++++ ++++++ + t+
  MMETSP0890-20130614|34157_1  95 VLEWIDTEKvSGSWCDLGCGVGSLAIPVAQRGAQVYASDISAAMVTETMQRATDAGISLKScETSDM--ENVDGSYDTVSCIDVMIHYPTDTMVNLVNKLTSLTN 197
                  555555544245668************************9988887666666555666543134444..46899***9999999999999999999999888776 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.5e-06    0.0052     107     152 ..     106     149 ..      89     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.5e-06
    PF07091.6 107 asvlDlaCgLnplavpwmklaedatylasDidkalvefieaflall 152
                   s  Dl+Cg   la+p +++   a+++asDi++a+v    + ++ +
  MMETSP0890-20130614|34157_1 106 GSWCDLGCGVGSLAIPVAQRG--AQVYASDISAAMVTETMQRATDA 149
                  4678************99876..8999*******986555544444 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.7e-05     0.011      97     165 ..     107     180 ..      68     212 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-05
    PF05219.7  97 klldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk.k.....ynvlsalelqetdvkldlilclnlldrcf 165
                     dlG G G ++  va+   +vya ++s  m     ++        +   + ++++ d  +d ++c++++   +
  MMETSP0890-20130614|34157_1 107 SWCDLGCGVGSLAIPVAQRGAQVYASDISAAMVTETMQRaTdagisLKSCETSDMENVDGSYDTVSCIDVMIH-Y 180
                  567***************************998654443131111134445667999999********99853.3 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0     2e-05     0.014       4      63 ..     108     165 ..     105     235 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-05
    PF13659.1   4 vldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdla 63 
                   +d+gcG G +++ +++++ a++++ +++++ +  + ++++ ag++       +d+++++
  MMETSP0890-20130614|34157_1 108 WCDLGCGVGSLAIPVAQRG-AQVYASDISAAMVTETMQRATDAGIS-LKSCETSDMENVD 165
                  58*****************.********************999982.3344444444443 PP

>> PF05958.6  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.9e-05     0.041     183     235 ..      93     143 ..      80     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.9e-05
    PF05958.6 183 ekmleWalevleeskgdllelycGnGnfslalaekfekvlateiakssveaaq 235
                   k+leW+   +e+ +g   +l cG G +++++a++  +v a +i+ + v  ++
  MMETSP0890-20130614|34157_1  93 DKVLEWID--TEKVSGSWCDLGCGVGSLAIPVAQRGAQVYASDISAAMVTETM 143
                  57888863..677889999**************************99987665 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00024      0.16      52     104 ..      84     137 ..      76     192 .. 0.74
   2 ?   -1.0   0.0       1.5   9.9e+02     165     191 ..     234     260 ..     212     269 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00024
   PF05148.10  52 vkkWPenPldviirklkkkkdnlvvadlGcGeakiaeav.rekekvrsfdlvav 104
                  ++   ++ +d++++++   k + +  dlGcG   +a  v ++  +v + d+ a 
  MMETSP0890-20130614|34157_1  84 IRVGHQQTIDKVLEWIDTEKVSGSWCDLGCGVGSLAIPVaQRGAQVYASDISAA 137
                  555567899***************************554155679999888763 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.5
   PF05148.10 165 svklfaraltklGfevkskdlsnkqfv 191
                  + + +++al+  Gf vk ++l++++f 
  MMETSP0890-20130614|34157_1 234 KEDDVEKALNDQGFIVKRRHLTSTNFY 260
                  556678999999**9999988877764 PP

>> PF01170.13  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00027      0.18      37      89 ..     113     154 ..     105     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00027
   PF01170.13  37 cGsGtilIEaallgakiapllkaeelklyglDidervvqgakeNaeeagvgdk 89 
                  cG G+++I  a+ ga+++           ++Di + +v+ + + a  ag++ k
  MMETSP0890-20130614|34157_1 113 CGVGSLAIPVAQRGAQVY-----------ASDISAAMVTETMQRATDAGISLK 154
                  9***************99...........********************9865 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00029      0.19      14      99 ..      97     181 ..      70     182 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00029
                  TTSGGGB-..EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH--TTB------HHHHHHHHS----BSEEEEES- CS
   PF02390.12  14 klfeneqk..lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiealglkNlrilegdaekvleslfadnslekifinFP 99 
                  ++++ e+     +++G+G G++ + +A++ +++   + +i+ ++v + ++++ + g++   +  +d e+v  s+ +  s+  ++i++P
  MMETSP0890-20130614|34157_1  97 EWIDTEKVsgSWCDLGCGVGSLAIPVAQRGAQV--YASDISAAMVTETMQRATDAGISLKSCETSDMENVDGSYDT-VSCIDVMIHYP 181
                  333333335589****************99875..68899999999999999999887777777777777777766.78888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:01.01
# Mc/sec: 647.73
//
Query:       MMETSP0890-20130614|34170_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 290.99
//
Query:       MMETSP0890-20130614|34175_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-13   48.4   0.0    2.6e-12   46.3   0.0    2.1  2  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.086   12.4   6.9      0.069   12.7   0.7    2.4  2  PF13639.1  Ring finger domain
        1.1    8.8   6.1       0.36   10.3   0.5    2.5  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   5.6e-16   2.6e-12       6      78 .]     268     342 ..     264     342 .. 0.93
   2 ?   -1.4   0.0      0.41   1.9e+03       7      39 ..     346     378 ..     343     381 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 5.6e-16
                  ----EEEE-TTS-HHHHHHHHHHHHTTTS.SEEEES.TTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   6 kgikvailhgelpqnereeileqfnagks.kvlvat.nvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                    i++++++g++pq er +il++f ++k+ +vl+at   a+ G+++ +++++i++d ++++    Q+++R++R+g
  MMETSP0890-20130614|34175_1 268 MSIETLRYDGDTPQCERGAILNEFSTSKRaNVLLATvHSAGVGLNICAASTIIFTDRWWNPNVHDQAMDRCHRIG 342
                  57999**********************999888888469**********************************87 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.41
                  ---EEEE-TTS-HHHHHHHHHHHHTTTSSEEEE CS
   PF00271.26   7 gikvailhgelpqnereeileqfnagkskvlva 39 
                  +++v +++++ + +e  + +++ ++g+ kv++a
  MMETSP0890-20130614|34175_1 346 EVNVHFIDAQDTIDEAMREVNKIKKGNGKVILA 378
                  678888999999999999999999999999987 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.025   1.1e+02      33      45 ..      71      83 ..      41      84 .. 0.64
   2 ?   12.7   0.7   1.5e-05     0.069      20      43 ..     158     188 ..     144     190 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.025
    PF13639.1 33 wlrssnsCPlCrk 45
                 + rs+ +C lCr+
  MMETSP0890-20130614|34175_1 71 LTRSNLNCALCRS 83
                 224455******7 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.5e-05
    PF13639.1  20 p.C..gHvfHeeCldewlrssn....sCPlC 43 
                  p C  gH  He+Cl+++  +s      CPlC
  MMETSP0890-20130614|34175_1 158 PyCelGHGVHEKCLRSLYGNSAltqlGCPLC 188
                  346779***********977634456***** PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4      0.11   4.9e+02      21      41 .]      58      81 ..      46      81 .. 0.68
   2 ?   10.3   0.5     8e-05      0.36      18      41 .]     163     188 ..     156     188 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.11
                 E-CHHHHHHHCS......T-----TTT CS
   PF00097.20 21 fCskCirkilks......rkkvkCPlC 41
                     C + +l++      r++ +C lC
  MMETSP0890-20130614|34175_1 58 S---CSKFYLRKprgaltRSNLNCALC 81
                 3...44455555555788899999999 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 8e-05
                  S-EE-CHHHHHHHCS..T-----TTT CS
   PF00097.20  18 kHsfCskCirkilks..rkkvkCPlC 41 
                  +H +++kC+r+++ +   ++  CPlC
  MMETSP0890-20130614|34175_1 163 GHGVHEKCLRSLYGNsaLTQLGCPLC 188
                  7*************86666777**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       463  (0.0338648); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.40s 00:00:01.22 Elapsed: 00:00:00.72
# Mc/sec: 1664.14
//
Query:       MMETSP0890-20130614|34174_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-35  122.5   0.0    1.5e-35  122.0   0.0    1.2  1  PF01512.12 Respiratory-chain NADH dehydrogenase 51 Kd subunit
    2.9e-06   26.1   0.1    6.1e-06   25.1   0.0    1.5  1  PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
    0.00032   20.4   0.0    0.00098   18.8   0.0    1.9  2  PF10531.4  SLBB domain


Domain annotation for each model (and alignments):
>> PF01512.12  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   3.3e-39   1.5e-35       4     150 ..     107     272 ..     104     273 .. 0.92

  Alignments for each domain:
  == domain 1    score: 122.0 bits;  conditional E-value: 3.3e-39
   PF01512.12   4 agivGrGGagFptgvKlkakak.kk..kylivNaaEcEPgltkDrllmreephe..vleGleiaaealgaekivigvrdekpeaiealekaiaeakaagl......leievvelagkYpaGeekaLiesltgr....evprgklpadvgv.....vvnNveTlaavp 150
                  a ++G GGagFpt++K++++++ ++  k+++vNa+E+ P ++kD++l r+ + +  +l G++ a++++ga+++++++r e+++  + +e+  +  ++ ++      + ++vv + g Y++Gee+aL+esl+g+    + +r++ p+d+g+     +v+NveT+a +p
  MMETSP0890-20130614|34174_1 107 ASLRGCGGAGFPTHLKWRSVRDaSAenKCVVVNADEGLPSTFKDYYLTRDASCRmrMLVGVATACHVVGAKQAYVYLRYEYKNLKSLIEADWEMYRT-KMnplaknIPLTVVLGGGPYICGEETALFESLEGNlpqaRTKRHQFPTDSGLfgwptLVSNVETFAWIP 272
                  789*******************55599**********************99865449************************9998888888777765.45589999****************************98888888999*******************998 PP

>> PF10589.4  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.3e-09   6.1e-06       6      38 ..     385     417 ..     381     427 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.3e-09
                  HHHHHHHHH-----HHHH-----HHHHHHH--- CS
    PF10589.4   6 fameFcaaESCGkCtPCRiGttrlvelldriar 38 
                    ++F+  ESC  C PCR+G +     +d i +
  MMETSP0890-20130614|34174_1 385 TKAKFYDVESCQLCSPCREGAKVFRYGVDSIMD 417
                  5689*****************998888887754 PP

>> PF10531.4  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.2e-07   0.00098       1      35 [.     296     330 ..     296     346 .. 0.91
   2 ?   -2.8   0.0       1.2   5.7e+03      24      46 ..     438     460 ..     437     464 .. 0.54

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.2e-07
                  EE--B---S----EEE----BHHHHHHTT-----S CS
    PF10531.4   1 vvtVtGeVkrPgvyevpiGttlsdlleqAGGltdd 35 
                  +++++G+V++P    +p+G tl+ +le+++G   d
  MMETSP0890-20130614|34174_1 296 LISISGDVAKPTLAAIPMGVTLRSVLEETAGIPID 330
                  59**************************9987765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.2
                  HHHHTT-----S.........-E CS
    PF10531.4  24 dlleqAGGltddayrdsinltrl 46 
                  ++l  +G +   +++ +  l+++
  MMETSP0890-20130614|34174_1 438 EVLSNCGHGKACGKTARTILEKK 460
                  56666666655444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.74
# Mc/sec: 1525.25
//
Query:       MMETSP0890-20130614|34186_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.28   10.8   0.0    1.7  1  PF04663.7 Phenol hydroxylase conserved region


Domain annotation for each model (and alignments):
>> PF04663.7  Phenol hydroxylase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.1e-05      0.28      23      45 ..     118     140 ..     114     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.1e-05
    PF04663.7  23 lFcapvalplpPdmpfgaLveqv 45 
                  lF a++ +plpP+ +f aL++ +
  MMETSP0890-20130614|34186_1 118 LFSAALSIPLPPNDNFFALINAM 140
                  9******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       209  (0.0152867); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 663.91
//
Query:       MMETSP0890-20130614|34189_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   14.5   0.0      0.015   14.3   0.0    1.0  1  PF04185.9 Phosphoesterase family


Domain annotation for each model (and alignments):
>> PF04185.9  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-06     0.015     306     364 ..       9      76 ..       7      80 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-06
    PF04185.9 306 DEngGfyDhVappvapvsnpdglv..........gskgpyGlGvRvPllviSPwakkGtvdhetfdhtS 364
                  D ++G +D     + + ++  glv          + +++yG G R+  + +SP+   +++ ++ +d  S
  MMETSP0890-20130614|34189_1   9 DRGDGLFDGSVHAARTAKT-IGLVddvceqhllhTLRQRYGKGIRIKRFRVSPFYLRNYYYSTNLDVDS 76 
                  6789999976666666532.3333455455544444***************************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 334.66
//
Query:       MMETSP0890-20130614|34198_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   17.8   0.1     0.0022   17.4   0.1    1.3  1  PF13661.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.6e-07    0.0022      11      35 ..      61      85 ..      46      88 .] 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.6e-07
    PF13661.1 11 hrfaltratrgdffdpHiDadpsql 35
                  ++ l++++ gdffd+H+D  p + 
  MMETSP0890-20130614|34198_1 61 DFVLLHEFGAGDFFDWHSDTKPGDN 85
                 67889**************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 319.51
//
Query:       MMETSP0890-20130614|34199_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-42  143.1   0.5    1.1e-41  142.5   0.3    1.2  1  PF09174.5 Maf1 regulator


Domain annotation for each model (and alignments):
>> PF09174.5  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.3     8e-46   1.1e-41      56     179 .]      16     138 ..       2     138 .. 0.94

  Alignments for each domain:
  == domain 1    score: 142.5 bits;  conditional E-value: 8e-46
    PF09174.5  56 v..spfgplsekssrktlayLiaiLnasfpDYDFsvlkpedFkkekslkevineinstLsslvkniykefeeklweiideeislkdCeiYsYkpeleedpfeeegalwslnYffynkklkrvvfls 179
                  +  sp g l e + r+ ++ Li++LnasfpDYDF+ l+pe+F ke s + v+++in+ L+ +v+ ++    e+lw +++e++++++C+++sY p+l++dpf ++++lws+n+ff+nk lkr+++++
  MMETSP0890-20130614|34199_1  16 MgySPLGALTEATTRRLFIDLISTLNASFPDYDFTCLSPEQFTKELSPELVVRNINTRLADFVSTET---LEELWLAVEEAVQMNQCQVFSYVPDLDSDPFSDQNVLWSFNFFFFNKHLKRILYFT 138
                  1449************************************************************999...9*****************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.96
# Mc/sec: 499.24
//
Query:       MMETSP0890-20130614|34196_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-34  117.5   0.0    8.2e-34  116.9   0.0    1.2  1  PF00294.19 pfkB family carbohydrate kinase
    9.2e-05   21.6   0.0    0.00017   20.7   0.0    1.4  1  PF08543.7  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   1.2e-37   8.2e-34      18     300 ..       9     282 ..       3     283 .. 0.88

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 1.2e-37
                  HCCH..S..B-E-SEEEEE------HHHHHHHH--.--EEEEEEE--TT.-HHHHHHHHTTTEEETTEEESSS-EEEEEEEEE-TTCEEEEEEE---GGGHHHHHHHHCHCHHTTEEEEHHEEE-SSSHHHHHHHHHHHHHHTT.EEECCCCCT--..HHCHHHHCSEESEECCCHHHHHHHCCSSH.HCHHHHHHHHHHHHH-T-SEEEEB------EEEESS--EEE--.-SS--SB-TT---TTT--HHHHHHT.....T--HHHHHHHHHHHHHHHHT----GGG-HH CS
   PF00294.19  18 dekl..ekelvevktvekgaGGagaNvavalarlg.gevafigavGddkfgeflleelkkegvdtdyvkideetrtglalilvdgdgertivfnrgaaadltpeelpedllaeadvlylsgallseplpeatlealieaaknngkfdpnlrdplwsqaleklrellpladilkpNeeEaealtgekd.ndveevlaalhklkakgaktvvvtlGkdGallvekdgevhvppvpkvkvvDttGAGDafvagflaglla.....gksleealrlanavaalvvqkagaisslpt 300
                  +e+l   +e+v++++ + +aGG+g+N+  a+ rlg + v fig vG+d++g ++l+e+ +e    d  +id+   tg+ l+++ +dg+ + v+++ga+ d  ++    +  +e +vl l    +++++++ + ++l       +  + + +d++    + +++e   +++ ++pN +E++ l++e++ +++e  ++ ++ l+      ++ t Gk G++l+ +d +++ p++p  +v+D tGAGDaf a+f+  +++      ++l++al +a+a++al+v++ ga+ slpt
  MMETSP0890-20130614|34196_1   9 VERLpkIGETVRARSRSCCAGGKGLNQGIAAVRLGvNGVKFIGRVGNDEAGVQILNEIGDE---FDIKVIDKV-CTGRGLVTLADDGQVYSVVLPGANFDGWQS--RDACTEECSVLLLQR-EIPDEVNAHYAKLLNPTFCILD--IGGSLDAEL---AAWCKE---YVHCIAPNLHELQVLCQETQfTNEEHMIKSARALNF---PFILLTCGKHGSYLIGRDIVLKQPAFPIDQVIDETGAGDAFRAAFATEIARlgnqnTETLAQALHFAAAAGALAVTRQGAVPSLPT 282
                  555554467779***********************999******************97765...444556776.99********99**********99998885..466677788888888.8888888888888888888888..777777777...466666...99******************9999999999999776...799******************************************************************************99998 PP

>> PF08543.7  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.5e-08   0.00017     119     231 ..     161     266 ..     148     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.5e-08
                  G-SEEE-BHHHHHHHHT.----SHHHHHH---HHHH----EEEEB----------..-EEE-----EE--------S-------HHHHHHHHHGGG.SS----HHHHHHHHHHHH CS
    PF08543.7 119 latlvtPNlpEaeaLlg.kkikteedmkeaakkllelgakavlikGghlegeeavvtdvlydgeevveleaerietknthGtGCtlssaiaaelak.gksleeAvkkAkeyvtea 231
                   ++ + PNl+E+++L++ +++++ee+m + a++l       +l+++g++ g+    +d+++++     +  +++   +  G+G+++ +a a+e+a+ g++  e++++A ++  +a
  MMETSP0890-20130614|34196_1 161 YVHCIAPNLHELQVLCQeTQFTNEEHMIKSARALNF---PFILLTCGKH-GSYLIGRDIVLKQPA---FPIDQVI--DETGAGDAFRAAFATEIARlGNQNTETLAQALHFAAAA 266
                  67889************9999999999999998865...78****9973.666666788885553...3333333..478**************975788888999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.59
# Mc/sec: 1376.89
//
Query:       MMETSP0890-20130614|34202_1  [L=860]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-18   65.3   0.3    8.9e-18   64.2   0.2    1.5  1  PF03109.11 ABC1 family
    3.8e-08   33.0   0.4    7.8e-08   31.9   0.0    1.8  2  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.2   1.3e-21   8.9e-18      17     117 ..     499     603 ..     495     605 .. 0.95

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 1.3e-21
   PF03109.11  17 ePlAaASiaQVHrAvlks....geeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfakl.kevkvPk 117
                  +++A+ASiaQVH ++l s    +++VavKvq+ g++  +++D++   ++a+  +++  ++     ++++  ++e+ +el f +E +na+++r+ +a++ + v vP+
  MMETSP0890-20130614|34202_1 499 NAIASASIAQVHIGKLYSdkikERKVAVKVQHHGIATLMTADIRRALRIAQFCARLDASF-EPTVTILESWKREIHKELSFLTEVDNAQRARSALAHFaTHVLVPE 603
                  589*************9999999************************************7.59999*******************************988888887 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.1e-11   7.8e-08      24      99 ..     135     227 ..     115     242 .. 0.78
   2 ?   -4.0   0.1       1.6   1.1e+04      90     112 ..     739     763 ..     735     765 .. 0.63

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.1e-11
                  EEEEECS-..........SCEEEEEEEHHHHHHHHHHHHHHTT................TSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCH CS
   PF00787.19  24 ievelktg..........akewtvkRrYsdFeeLhskLlrkfp................rlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpe 99 
                  +e++ k +            ew+v+RrYs+F  L ++L++                    ++ Pp+P ++ ++         +e+rr+gLe +L++++++  
  MMETSP0890-20130614|34202_1 135 YEITAKAKicmkqgemrlVPEWKVSRRYSEFRALWQQLKSSVYkstkkedemmcslgfrSSQHPPFPARNAIS---------LETRRQGLETWLRHIVQQVS 227
                  55555544555555999999********************9999*******9888888888888888888876.........6**************99765 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.6
                  HHHHHHHSCHHHH..SHHHHHHHHC CS
   PF00787.19  90 yLqrllnhpelrk..sevltsFLev 112
                  ++q l+++   ++  +e+ t+F+e 
  MMETSP0890-20130614|34202_1 739 FFQFLFRNTSSSEqaKEETTEFFEK 763
                  5555666655555556777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:01.13
# Mc/sec: 1807.78
//
Query:       MMETSP0890-20130614|34247_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      482  (0.0352545); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 198.56
//
Query:       MMETSP0890-20130614|34255_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.41s 00:00:00.69 Elapsed: 00:00:00.85
# Mc/sec: 143.78
//
Query:       MMETSP0890-20130614|34239_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.91
# Mc/sec: 792.64
//
Query:       MMETSP0890-20130614|34253_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   28.0   0.8       0.17   11.5   0.0    4.3  4  PF06743.10 FAST kinase-like protein, subdomain 1


Domain annotation for each model (and alignments):
>> PF06743.10  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.022     3e+02      27      53 ..      38      63 ..      28      75 .. 0.72
   2 !    9.0   0.0   7.3e-05         1      18      51 ..     102     135 ..      88     141 .. 0.82
   3 !    8.1   0.0   0.00014         2      16      52 ..     155     191 ..     151     193 .. 0.90
   4 !   11.5   0.0   1.2e-05      0.17       2      51 ..     181     231 ..     180     243 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.022
   PF06743.10 27 salereLdsispelllnlvwSlclley 53
                 ++++ + + +s ++l n+vw+ +  e+
  MMETSP0890-20130614|34253_1 38 NSIKLK-QDFSTQALANVVWAMAKTET 63
                 445556.6899999*******987776 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 7.3e-05
   PF06743.10  18 aeeffeklasalereLdsispelllnlvwSlcll 51 
                  a ++fe++a +   ++++++ ++l n+ w+++ +
  MMETSP0890-20130614|34253_1 102 APALFEAIAAVAPLKIHHFKTQELANTAWAFATA 135
                  4569***************************976 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00014
   PF06743.10  16 pnaeeffeklasalereLdsispelllnlvwSlclle 52 
                  +n+  +++++a + +  L +++p++l nl w+++ le
  MMETSP0890-20130614|34253_1 155 SNTAHLLDAIAHESTPRLITFKPQELANLAWAFSKLE 191
                  678889999***********************98776 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 1.2e-05
   PF06743.10   2 sklllpfarLN.YkPpnaeeffeklasalereLdsispelllnlvwSlcll 51 
                  ++l ++f++L  Y   +++ f  ++ ++   +++ ++p++l  l +S++ +
  MMETSP0890-20130614|34253_1 181 ANLAWAFSKLEgYAFRKRSDFIAAISQSARINIKNLDPHHLTVLIYSFAKA 231
                  68889******************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      424  (0.0310123); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.94
# Mc/sec: 846.37
//
Query:       MMETSP0890-20130614|34266_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.14   12.6   0.0    1.1  1  PF13145.1 PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> PF13145.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     1e-05      0.14      45      96 ..      11      61 ..       4      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1e-05
    PF13145.1 45 akagedfaalakgnsedakdlgisesesdlpeelaealfalkpgevsgpies 96
                    +e+fa+l+ g+ +    ++  e +++  +elae++ +l+ g+++ pi+s
  MMETSP0890-20130614|34266_1 11 VDRNENFAKLQAGYLFPRIGKARREFAESN-PELAEKIISLGIGDTTQPIPS 61
                 556799***********7777766666533.69*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.79
# Mc/sec: 266.94
//
Query:       MMETSP0890-20130614|34260_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-65  221.3   0.0    1.4e-65  221.0   0.0    1.0  1  PF06516.6 Purine nucleoside permease (NUP)


Domain annotation for each model (and alignments):
>> PF06516.6  Purine nucleoside permease (NUP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.0     1e-69   1.4e-65      39     303 ..      10     280 ..       1     284 [. 0.93

  Alignments for each domain:
  == domain 1    score: 221.0 bits;  conditional E-value: 1e-69
    PF06516.6  39 evhcnedtgvlqlvtgegeanaaasvsalvldsrFDltktYflvaGiaGidPkaatigsvawakyvvdvdlqyeiDareipedwkt.gyfplgtkePdekpkkeyg..tevfelnekLrdlAvelakkveLkdseeakalRkkYteepaAqkaPavlkgdtltadtyfhGellneaaedwvklltdgkg...eyvttaqEdnatlealarlakagrvDfsRilvlRtasnfdrpppgesaleslleee.qggfeaalenlyraGskvvkeiv 303
                   +  ne   vl+lvtg+g  + a sv+ l+ld+rF+lt +Yf++aGiaG+dP+ +++gs+ wa +++ +d  y++Dare+p+ w+    +p + +eP ++p+  +    ++f+l    + +A++l+++v L+d+  ++++Rk Y++++ A ++P+v  gd++++d y+ G+ l++  ++w +++ d+++   ++ tta+Ed+a+++al+ l++a rv  sR++vlRt+s+++ +pp+++ +  +++++  ++ ++a+e++y +  +v+++++
  MMETSP0890-20130614|34260_1  10 PLFWNESLRVLGLVTGQGVRRGAISVTGLGLDPRFNLTTSYFIFAGIAGVDPAVGSVGSAFWALHAIHADSGYRFDAREVPSAWHGvTVVPEERNEPFSEPPPLNYpdIMTFNLK-PFALWAYNLSQHVVLPDTILLQTVRKDYPSNSPASQKPTVRLGDVVSGDFYWAGKYLTSFYRRWYRYWLDSQDfdtNFATTAMEDTAVITALHCLHNASRVNASRVAVLRTISDYSHQPPNQQLIPWFFAKShLAAETPAFEAAYLTVRPVLDALL 280
                  56789999****************************************************************************8526899********9998877457777775.5899****************************************************************999854449**********************************************99887777769999**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.79
# Mc/sec: 888.78
//
Query:       MMETSP0890-20130614|34273_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.45s 00:00:00.81 Elapsed: 00:00:00.63
# Mc/sec: 429.82
//
Query:       MMETSP0890-20130614|34268_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2   11.0   5.8       0.57    9.6   4.0    1.9  1  PF04120.7  Low affinity iron permease
       0.33   10.0   2.4       0.16   11.0   0.1    1.6  2  PF14171.1  Toxin SpoIISA, type II toxin-antitoxin system
       0.36   10.8   2.3          9    6.3   1.9    2.5  2  PF05650.6  Domain of unknown function (DUF802)
       0.77    8.6   3.9        1.5    7.7   2.7    1.5  1  PF08704.5  tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PF04120.7  Low affinity iron permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.0   0.00017      0.57      65     131 ..     186     252 ..     175     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
    PF04120.7  65 nrddaalqlkldeLiaavknaknkligleelteeeleelakeyerlaeaaeereevdkaesseaaee 131
                  ++  a lq+k  +   +  +akn+li le++++ e+++++ +++ ++++a++ +++++ +++++++e
  MMETSP0890-20130614|34268_1 186 EAKVAKLQEKAAKGGVLGMAAKNELIILEQADQTEMNRIEITLQAAKRKASKMSATQALNDAKEKHE 252
                  333446788877777777889**********************999999988888887777776655 PP

>> PF14171.1  Toxin SpoIISA, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.8e-05      0.16     166     213 ..      80     128 ..      56     139 .. 0.86
   2 ?   -3.0   0.1      0.88     3e+03     159     179 ..     228     248 ..     211     272 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.8e-05
                  HHHHHHHTTSS-HHHHHHHHHTT--EE-----EEEEE.EEETTEEEEEE CS
    PF14171.1 166 eekdelletikereevqakLdrkkvvyekegklvlvp.fsiqeellvik 213
                  +  d l+++ k r+ +q k ++++v y+++gk+v++    ++++ +++k
  MMETSP0890-20130614|34268_1  80 QAADFLQKHAKTRTGLQRKKEVEDVDYNHDGKIVFIEyLLMHYKVMILK 128
                  556788999****************************777888888877 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.88
                  EEE-SSHHHHHHHHTTSS-HH CS
    PF14171.1 159 vfpfetqeekdelletikere 179
                  +   + +++k+ +++ +++++
  MMETSP0890-20130614|34268_1 228 LQAAKRKASKMSATQALNDAK 248
                  333344444444444433333 PP

>> PF05650.6  Domain of unknown function (DUF802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12     4e+02      30      45 ..     167     182 ..     164     189 .. 0.78
   2 ?    6.3   1.9    0.0026         9       7      49 ..     235     277 ..     226     278 .] 0.92

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.12
    PF05650.6  30 LaqqLraaLeqfaatF 45 
                  L+ +L++aLe f++  
  MMETSP0890-20130614|34268_1 167 LSPELERALEEFTNEK 182
                  67789*******9865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0026
    PF05650.6   7 asaaavAaaWqeALaeQqraqeaLaqqLraaLeqfaatFeqrs 49 
                  as  ++++a ++A ++++ a    +++ ra++ q a  Fe  +
  MMETSP0890-20130614|34268_1 235 ASKMSATQALNDAKEKHEKAAKDEHARRRATMKQRASMFEKKA 277
                  67778999*******************************9876 PP

>> PF08704.5  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.7   0.00043       1.5     220     278 ..     212     271 ..     206     278 .] 0.75

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00043
    PF08704.5 220 alaelgfveietlevllkqyevrkvkleeidlaektleeneekriekakerka.ekdakv 278
                   l++++ +e++ +e+ l+  + + +k++ ++  ++++e++e+ +++++ +r+a +k+ ++
  MMETSP0890-20130614|34268_1 212 ILEQADQTEMNRIEITLQAAKRKASKMSATQALNDAKEKHEKAAKDEHARRRAtMKQRAS 271
                  5889999**********************9998888888777766655555541444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1379  (0.100863); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 925.26
//
Query:       MMETSP0890-20130614|34265_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1040  (0.0760679); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.40s 00:00:01.28 Elapsed: 00:00:00.77
# Mc/sec: 1587.20
//
Query:       MMETSP0890-20130614|34277_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   50.1   0.0    2.7e-13   49.0   0.0    1.5  1  PF02709.9 N-terminal domain of galactosyltransferase
    0.00051   19.1   0.0    0.00072   18.6   0.0    1.3  1  PF10111.4 Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.02   14.8   0.3      0.042   13.7   0.2    1.5  1  PF06497.6 Protein of unknown function (DUF1098)


Domain annotation for each model (and alignments):
>> PF02709.9  N-terminal domain of galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   5.9e-17   2.7e-13      25      72 ..       4      51 ..       2      55 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 5.9e-17
    PF02709.9 25 alskedfrkvnGfsntfwgWGgEDdelyaRlakkglkierpkkgtgry 72
                 a++  df+++nGf+n  wgWG  D e++ R++++gl+i rp+ + g y
  MMETSP0890-20130614|34277_1  4 AIRPDDFIATNGFPNDCWGWGLDDAEFALRMKAAGLRILRPPQNLGSY 51
                 78999************************************9998876 PP

>> PF10111.4  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.6e-07   0.00072     172     218 ..       2      48 ..       1     114 [. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.6e-07
    PF10111.4 172 cilinrdiFlkiGGfdEsFrghggEDlellaRLllaykkfketkdll 218
                  +i+i+ d+F+++ Gf ++  g+g+ D e++ R+++a+ ++ +++++l
  MMETSP0890-20130614|34277_1   2 AIAIRPDDFIATNGFPNDCWGWGLDDAEFALRMKAAGLRILRPPQNL 48 
                  589********************************999998888876 PP

>> PF06497.6  Protein of unknown function (DUF1098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   9.2e-06     0.042      18      57 ..     225     264 ..     209     273 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.2e-06
    PF06497.6  18 inaeellqaLneaqtvarlilnDtsenKresLkkLskqsr 57 
                   +++ l+++ n++q v   i nD ++ K+++ +++sk+sr
  MMETSP0890-20130614|34277_1 225 KENDSLITTSNQVQEVVASINNDLDTTKKQATEEISKKSR 264
                  5899***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       699  (0.0511264); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.64
# Mc/sec: 1033.43
//
Query:       MMETSP0890-20130614|34278_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.083   12.7   0.4       0.19   11.5   0.3    1.5  1  PF00482.18 Type II secretion system (T2SS), protein F
        1.3    7.7   7.5       0.16   10.7   1.3    1.9  2  PF03915.8  Actin interacting protein 3


Domain annotation for each model (and alignments):
>> PF00482.18  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   2.8e-05      0.19      17     103 ..     158     240 ..     148     244 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.8e-05
                  HHHHHHHHT-S-HHHHHHHHHHHHHHH----HHHH----TTTS-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHXXX CS
   PF00482.18  17 eaLellarekengplaeelkrilerlrnGgslsaalartpsefpdlvaaliaagesgGnlaevLerladyleerrelrkkllaalle 103
                  +a++ ++ ++    l+++l ++ e+ + G  +s+++++   + + ++ al  a +   +l  + +r+a++le+r++++ +++aa+ +
  MMETSP0890-20130614|34278_1 158 SAVQDIKATT-LLGLSDALAKLEEKSSDGDMPSDKVKK---DDSNFIGALKDAKRLRRRLVHTRDRIARHLEQRQATKSNASAAMRK 240
                  4455555555.666777777777777777777777776...55*****************************************976 PP

>> PF03915.8  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2     0.043   2.9e+02     118     170 ..      62     116 ..      31     124 .. 0.43
   2 ?   10.7   1.3   2.3e-05      0.16      59     172 ..     159     284 ..     155     297 .. 0.56

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.043
    PF03915.8 118 etakevardaaapkesseaksessaksikkks...........qkkelkslkreLavlrqlkse 170
                  e ++++a+ +++ +  ++++ +                     ++++l++    L+ lr l+++
  MMETSP0890-20130614|34278_1  62 EPQASTATSVSSDHDEKATHAA---------IdakadeklvdvAQAQLQHTGSALSALRALEAH 116
                  2221111111111111111111.........011112222333556666666666666666555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.3e-05
    PF03915.8  59 kLsdikdgsvlvLnvee.............ldevkkeedkslkelkekvkslkqklddqqetilqrvkelqqetakevardaaapkesseaksessaksikkksqkkelkslkreLav..lrqlksesk 172
                   ++dik  ++l L+                 d+vk + d+++ +  +  k+l+ +l ++++ i+++++++q+  ++  a    ++k+s+++++++ + + +k    +e ++  ++++v  lr+  ++ +
  MMETSP0890-20130614|34278_1 159 AVQDIKATTLLGLSDALakleekssdgdmpSDKVK-KDDSNFIGALKDAKRLRRRLVHTRDRIARHLEQRQATKSNASAAMRKKKKTSTAPSKKHYSVAPSKP--VAEAHEKSTDIKVarLRRHTARLF 284
                  57788888888887654332223333333334444.5555666666778999999999999999999999665555444444444444444444444333333..455554444444411444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       803  (0.0587332); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.73
# Mc/sec: 1122.68
//
Query:       MMETSP0890-20130614|34286_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.3   1.4    1.3e-08   34.3   1.0    2.2  2  PF00149.23 Calcineurin-like phosphoesterase
    0.00076   19.2   5.0     0.0061   16.2   3.6    2.2  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   1.0   1.9e-12   1.3e-08       2     200 ..      29     255 ..      28     256 .. 0.79
   2 ?   -0.8   0.0      0.11   7.7e+02     189     201 .]     335     347 ..     333     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.9e-12
                  EEEEEEEBTBBHHHHH.....H..HHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHH.......HCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEES........T.....EEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH...........SCCHHHHHHHHHHHHTTSSEEEE-SSSS CS
   PF00149.23   2 rilvigDlHgglddle.....g..lllilleiaaeekpdlvlflGDlvdrgdwssetlalld.......ylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeel........s.....itllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddi.........gggelfgpdalekllekygvdlvlrGHeHv 200
                  ++ ++gDlH ++ d +           ++ +   +  + +++ lGD+    d  ++ + ++         + +  ++++p+ ++ GNH+  +++++     +   +          y+ +        +        l ++ +    + ++  + +++q e++e+ l +  ++ ++ +++ tH+p+ +sg  ++++            ++   +  +  +++ +++ ++ GH H 
  MMETSP0890-20130614|34286_1  29 TVGILGDLHVDPRDMDdtyaaRehMKALFAKDEYKDANKFLISLGDVGESKDCTETKQLYAGttacfelVSDYLENFGVPYDVVGGNHDLEGIDEFPTDAANLEAY--------LKYFKKetpqfchqVaektlLVGLGSTRFRDAEFTSHEVYIDDAQVEWFEQCLKEHSAEDDWRIFVFTHAPIIGSGLRCLQEnhvvngcawLNHCDRPQRFIDLVRKNSQIKGWFNGHLHL 255
                  6899************988752677777888888888889999***9998887777776666*******************************9998777666632........2222223334554515556556666666666666667777777788888888888888888888899********************9998888888888888899999***********5 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.11
                  TSSEEEE-SSSSE CS
   PF00149.23 189 gvdlvlrGHeHvp 201
                  ++ +v+++H+H++
  MMETSP0890-20130614|34286_1 335 RCEIVVFAHDHED 347
                  6789*******85 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.6   8.9e-07    0.0061       3     117 ..      30     203 ..      29     353 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.9e-07
    PF12850.2   3 iaiiSDlHgnldale............avledike.vdlilhaGDlvep.............eevvelledi......pvlavrGnhD...eaelpkel.avel......................llaaaaleie.........gdrvllvhgtplsvqsseeelaellkeagadlvflGH 117
                  ++i++DlH  +++++             + +++k+  ++++ +GD+ e+             ++++el+ d+      p  +v GnhD    +e+p+ + ++e+                      +        +         +++ + v  ++++v++ e+ l+e   e++ +++++ H
  MMETSP0890-20130614|34286_1  30 VGILGDLHVDPRDMDdtyaarehmkalFAKDEYKDaNKFLISLGDVGESkdctetkqlyagtTACFELVSDYlenfgvPYDVVGGNHDlegIDEFPTDAaNLEAylkyfkketpqfchqvaektllV--------GlgstrfrdaEFTSHEVYIDDAQVEWFEQCLKEHSAEDDWRIFVFTH 203
                  689******9998877776665554332223335468999*****7553444455555556645555554444333888*********765222554440222233333333333233222222220........02222222222233333334444444444444555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.74
# Mc/sec: 1742.22
//
Query:       MMETSP0890-20130614|34289_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-16   59.7   0.0    3.2e-16   58.6   0.0    1.5  1  PF09794.4  Transport protein Avl9
    1.2e-09   37.6   0.4    2.7e-09   36.5   0.0    1.8  2  PF07792.7  Docking domain of Afi1 for Arf3 in vesicle trafficking
  ------ inclusion threshold ------
      0.047   13.3   0.1       0.12   11.9   0.0    1.7  1  PF02141.16 DENN (AEX-3) domain


Domain annotation for each model (and alignments):
>> PF09794.4  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   7.1e-20   3.2e-16       3     299 ..      80     362 ..      79     441 .. 0.66

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 7.1e-20
    PF09794.4   3 aivvvdFhHkkGpevefsyppeeeekeeleeewklLpflaLpDGaHnfeedfvyFtlledeseteeektlfgiscvrQikaeelkkrtadvtRstvQKavvvlskkpifgklkekLsi..itkayfeqkdfsnteilkelyeslnaelkskekeeleeselyvglslrelvlkfrhkvLvlfKlllLekkvlvygspve....klcelllsllSLipklleklqdsaspllessesdwelskpeslkesdrksvlrflglPlqiFekgalflPYlpLqqld..lL..sdktvksflvGtsNsLllqq 299
                  a+++v+FhHk+G  ve + p+       + e+  +L f aLpDGaH+++e  ++  l      +++e + +g + v Q     + + +    R  vQ a+++l++ p++ + +  L      +  +e +  +  ++l ++ ++l ++l++++k+e+e++++  g   r l       v  l+K++lLe+ v++ +++v+    + +e  l+l   ip+ ++   +s +++ ++s  d  ++ pe+l   + +   ++lg   ++  + a++ P ++L +l+   L  s+k  +  + G+sN  l+ q
  MMETSP0890-20130614|34289_1  80 ALAIVGFHHKRGNVVEAVLPN-------SLEKSDELAFGALPDGAHHSSELEAWSYLS----VSRNEGSWYGATRVWQR----VGEGEGYESRGHVQQALCILCTRPLYANTRRLLLSdkWEELVYERSRCKRFDMLGKMRQQLLQTLNQQSKQEEEDNSVGCGAMCRRLGAA---SVWRLIKTVLLERSVIFAADQVKyslsAASESALALANFIPGFIDATCKSETSTNTQSIID--TTIPEQLARQN-QLGVEYLG---AVLGERAVLRPNVSLAHLNggSLasSQKPGRLVICGCSNPHLALQ 362
                  6789****************3.......3345578************99876666665....668999****9998874....555666778*******************998774322567889*********************99999999889999999888888654...555689***********99887631113444555666667777776544444444444444..66777773333.33345666...467888999999999988733453344455677778988544333 PP

>> PF07792.7  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   5.9e-13   2.7e-09       3      52 ..      80     127 ..      79     134 .. 0.85
   2 ?   -3.6   0.2         2     9e+03      36      44 ..     780     788 ..     764     789 .. 0.63

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 5.9e-13
    PF07792.7   3 aicvveFDlkrGpevehqypkdlslseselsnLaflsLPDgihes..eedft 52 
                  a+ +v+F++krG++ve+  p++     + + +Laf +LPDg+h s   e ++
  MMETSP0890-20130614|34289_1  80 ALAIVGFHHKRGNVVEAVLPNS----LEKSDELAFGALPDGAHHSseLEAWS 127
                  6889******************....899*************8883445555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2
    PF07792.7  36 aflsLPDgi 44 
                  +++sLP+++
  MMETSP0890-20130614|34289_1 780 SSSSLPSSS 788
                  356788875 PP

>> PF02141.16  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05      0.12      68     130 ..     210     273 ..     160     276 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.6e-05
   PF02141.16  68 illqrpsdselPledvdleelfrcLsienvlqlfeavLlErriillSeklar.Ltsvaealval 130
                  ++l+++s++e   ++v   ++ r L+   v +l++ vLlEr +i+ +++++  L++++e+ +al
  MMETSP0890-20130614|34289_1 210 QTLNQQSKQEEEDNSVGCGAMCRRLGAASVWRLIKTVLLERSVIFAADQVKYsLSAASESALAL 273
                  33333333333237777889****************************9984388888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       804  (0.0588063); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.22u 0.38s 00:00:01.60 Elapsed: 00:00:01.08
# Mc/sec: 1757.33
//
Query:       MMETSP0890-20130614|34294_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       155  (0.011337); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.35s 00:00:00.62 Elapsed: 00:00:00.65
# Mc/sec: 206.46
//
Query:       MMETSP0890-20130614|34297_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-05   22.3   2.6    0.00021   21.1   1.8    1.6  1  PF01966.17 HD domain


Domain annotation for each model (and alignments):
>> PF01966.17  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.8   1.5e-08   0.00021       2     121 ..      51     160 ..      50     161 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.5e-08
                  HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTHHHHS..S..HHHHHH...HHHHHHHHHHHHHHHHHHCCS.......HHHHHCCCCCCGS-TTTSHH...HHHHSTTTS-HHHHHHHHHHHHHH CS
   PF01966.17   2 leHsleVaklarrlaedlgeeedrellrlaaLlHDiGkgpfgdffekkqeefekfkaHekvgaeilrevekrlgld......ledvaklirehhrswegkky...psglaerelslearivklaDrlaa 121
                  l+H ++V  la ++++ +   +d + +++aaLlHD+   +   +               +++ae  r +++ + ++      ++++++++++  +++ ++     p +   ++   +  iv++aD+++a
  MMETSP0890-20130614|34297_1  51 LYHAMRVRDLAMKICHFET-IADTDMIETAALLHDVLDHK---Y---------------IESAEANRPELEAFLTKhgglhvVMNIIDTVSYSKEKKSREANtipPFAHLDEPVLTYRHIVSDADKIDA 160
                  58*************9888.****************9888...3...............334444444444443334443345666666666666666554466444*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.87
# Mc/sec: 707.89
//
Query:       MMETSP0890-20130614|34315_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-20   70.2   2.0    9.6e-20   70.2   1.4    1.9  2  PF00276.15 Ribosomal protein L23
    5.1e-09   35.9   6.7    5.1e-09   35.9   4.7    1.7  2  PF03939.8  Ribosomal protein L23, N-terminal domain
  ------ inclusion threshold ------
      0.052   12.6   0.1      0.058   12.4   0.0    1.3  1  PF09439.5  Signal recognition particle receptor beta subunit
      0.073   12.2   0.0      0.083   12.1   0.0    1.2  1  PF04220.7  Der GTPase activator (YihI)
       0.14   10.0   3.2       0.15    9.8   2.2    1.0  1  PF06933.6  Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> PF00276.15  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   3.4e+03      60      62 ..      31      33 ..      14      54 .. 0.56
   2 !   70.2   1.4   3.5e-23   9.6e-20       1      91 [.      59     137 ..      59     138 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.2
   PF00276.15 60 vkR 62
                 ++R
  MMETSP0890-20130614|34315_1 31 FYR 33
                 333 PP

  == domain 2    score: 70.2 bits;  conditional E-value: 3.5e-23
   PF00276.15   1 tdiikapiitekalnlleeenkyvFkVdkkanKteikdaveeifgVkvvkvntlilkgkvkRngqvlgrkksyKkaivtLeeg.dilplask 91 
                  +++ik+p++te a++++e++n++vF+Vd+ anK++ik+av+++++++  kvntli++      g         Kka+v+L+++ d+l++a++
  MMETSP0890-20130614|34315_1  59 YRVIKYPLTTESAMKKIEDNNTLVFIVDVMANKRQIKEAVKQMYEIQCAKVNTLIRP-----DGA--------KKAYVRLTQDfDALDVANR 137
                  689******************************************************.....888........**********99**99987 PP

>> PF03939.8  Ribosomal protein L23, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   4.7   1.9e-12   5.1e-09       4      53 ..       4      52 ..       1      53 [. 0.93
   2 ?   -3.1   0.0       2.7   7.4e+03      24      28 ..     119     123 ..     110     126 .. 0.61

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.9e-12
    PF03939.8  4 aakaakakKavkkGakakktrKirtsvtFrRPkTlklprkPkypRksvps 53
                 + kaa+a+ av +G+ +k   K rt+v+F RPkT++  +  k  Rks+ps
  MMETSP0890-20130614|34315_1  4 SSKAAAAATAVRSGTGKKM-VKTRTKVHFYRPKTFQPVSEKKVLRKSTPS 52
                 78************88888.8****************************8 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.7
    PF03939.8  24 rKirt 28 
                  +K++ 
  MMETSP0890-20130614|34315_1 119 KKAYV 123
                  45554 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05     0.058      71     106 ..      73     108 ..      11     117 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
                  HHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHH CS
    PF09439.5  71 kaksslkglvfvvDStidpkevkevAEllyeillit 106
                  k+ +   +lvf+vD  ++++++ke    +yei   +
  MMETSP0890-20130614|34315_1  73 KKIEDNNTLVFIVDVMANKRQIKEAVKQMYEIQCAK 108
                  33344689***********************97765 PP

>> PF04220.7  Der GTPase activator (YihI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     3e-05     0.083      83     143 ..      49     114 ..       3     129 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
    PF04220.7  83 kkpkkkekkkp.............klspeqeLekLEnderLnqLLdrLdegekLsaedqkwvdekldrieeLme 143
                  ++        p              l+ e  ++k+E+++ L  + d + + ++++++ ++  + + ++++ L++
  MMETSP0890-20130614|34315_1  49 ST--------PsmtkmdkyrvikyPLTTESAMKKIEDNNTLVFIVDVMANKRQIKEAVKQMYEIQCAKVNTLIR 114
                  22........0222233334555589**********************************99*99999999986 PP

>> PF06933.6  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2   5.5e-05      0.15     368     447 ..       5      90 ..       1     107 [. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.5e-05
    PF06933.6 368 ckaaktasscaks..gekkvkrkarlekmraksrravgnr.....lkgsmkkrvrsrakkfgkaaksgvrryrknikyvyippvmas 447
                   kaa +a++  +s  g+k vk ++++   r k+ + v ++        sm k  + r  k+  ++ s +++   n   v+i  vma 
  MMETSP0890-20130614|34315_1   5 SKAA-AAATAVRSgtGKKMVKTRTKVHFYRPKTFQPVSEKkvlrkSTPSMTKMDKYRVIKYPLTTESAMKKIEDNNTLVFIVDVMAN 90 
                  5666.55566666225788999999*999*9988777765221114579************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       729  (0.0533207); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.75
# Mc/sec: 450.52
//
Query:       MMETSP0890-20130614|34319_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-21   75.6  33.1    3.2e-07   29.6   0.7    5.0  5  PF12799.2  Leucine Rich repeats (2 copies)
    5.9e-19   67.4  18.0    5.1e-07   29.2   0.8    3.3  3  PF13855.1  Leucine rich repeat
    1.5e-15   54.7  17.3      0.066   13.1   0.1    8.3  8  PF00560.28 Leucine Rich Repeat
    1.2e-08   33.6  19.5       0.72   10.2   0.1    8.1  8  PF13504.1  Leucine rich repeat
    1.3e-08   33.8  19.7       0.56   10.3   0.1    8.0  9  PF13516.1  Leucine Rich repeat
  ------ inclusion threshold ------
       0.44   10.2   5.9         12    5.7   0.1    4.3  4  PF07725.7  Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.7   1.4e-10   3.2e-07       1      42 [.       1      43 [.       1      45 [. 0.95
   2 !   17.7   0.6   7.6e-07    0.0017       3      40 ..      50      85 ..      50      88 .. 0.91
   3 !   24.3   1.2   6.9e-09   1.6e-05       2      34 ..      70     102 ..      69     106 .. 0.95
   4 !   25.9   0.8   2.2e-09   4.9e-06       5      42 ..     126     166 ..     122     170 .. 0.92
   5 !   25.3   0.6   3.2e-09   7.3e-06       1      40 [.     148     188 ..     148     193 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.4e-10
    PF12799.2  1 tnLevLdLsnNnIkdlppe.lanLpnLktLnLsnNpisdlsaL 42
                 ++L+ LdLs N +++lp++ +  +pn ktL L +N++++l++L
  MMETSP0890-20130614|34319_1  1 KKLKILDLSINILEELPHDmIRHFPNIKTLKLGRNKLTSLPQL 43
                 69****************76*********************98 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 7.6e-07
    PF12799.2  3 LevLdLsnNnIkdlppelanLpnLktLnLsnNpisdls 40
                 L +L  ++N+++ ++  ++n++n + L Ls+Np++ ++
  MMETSP0890-20130614|34319_1 50 LVTLEANDNQLTVVD--FSNCNNIEKLILSRNPLTTIP 85
                 6689999********..6*****************886 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 6.9e-09
    PF12799.2   2 nLevLdLsnNnIkdlppelanLpnLktLnLsnN 34 
                  n e+L Ls+N+++ +p ++  L++L tL+Ls++
  MMETSP0890-20130614|34319_1  70 NIEKLILSRNPLTTIPKSILTLSKLVTLDLSYC 102
                  89*****************************98 PP

  == domain 4    score: 25.9 bits;  conditional E-value: 2.2e-09
    PF12799.2   5 vLdLsnNnIkdlppe...lanLpnLktLnLsnNpisdlsaL 42 
                  +L L +N+I+ +++e   l + p+L+ L+L++N++s+++aL
  MMETSP0890-20130614|34319_1 126 ELLLDGNQISAIGGEdliLIKAPKLRRLSLQYNQLSSFPAL 166
                  799***********999899*******************98 PP

  == domain 5    score: 25.3 bits;  conditional E-value: 3.2e-09
    PF12799.2   1 tnLevLdLsnNnIkdlppelanLpn.LktLnLsnNpisdls 40 
                  ++L+ L+L++N++++ p+ l + p+ L  L+L +Npis+ +
  MMETSP0890-20130614|34319_1 148 PKLRRLSLQYNQLSSFPALLLKSPSpLNALDLKGNPISKST 188
                  79****************99999999***********9755 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.7   1.1e-09   2.5e-06       2      41 ..       2      41 ..       1      44 [. 0.96
   2 !   29.2   0.8   2.2e-10   5.1e-07       3      59 ..      50     102 ..      48     104 .. 0.91
   3 !   21.4   1.4   6.2e-08   0.00014       2      61 .]     123     184 ..     122     184 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.1e-09
    PF13855.1  2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksis 41
                 +Lk LdLs N l+++p+++  + +n k+L+L++n+l+s++
  MMETSP0890-20130614|34319_1  2 KLKILDLSINILEELPHDMIRHFPNIKTLKLGRNKLTSLP 41
                 79************************************97 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 2.2e-10
    PF13855.1   3 LkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgN 59 
                  L +L  ++N l+v++   F++++n ++L Ls+n l++i++ +   L +L  L+Ls++
  MMETSP0890-20130614|34319_1  50 LVTLEANDNQLTVVD---FSNCNNIEKLILSRNPLTTIPKSI-LTLSKLVTLDLSYC 102
                  7789999********...********************9866.669*********97 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 6.2e-08
    PF13855.1   2 nLkeLdLsnNrlkvi..pdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  +L eL L++N ++ i  +d ++ + ++L+ L+L++n l+s+++ ++k+   L  L+L+gN++
  MMETSP0890-20130614|34319_1 123 SLLELLLDGNQISAIggEDLILIKAPKLRRLSLQYNQLSSFPALLLKSPSPLNALDLKGNPI 184
                  57789**********877789999************************************87 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00036      0.82       1      21 [.       2      23 ..       2      24 .. 0.90
   2 !    8.5   0.0   0.00096       2.2       1      19 [.      26      43 ..      26      45 .. 0.89
   3 !    5.6   0.1    0.0082        19       1      14 [.      59      73 ..      59      75 .. 0.86
   4 !   13.1   0.1   2.9e-05     0.066       1      19 [.      70      89 ..      70      91 .. 0.88
   5 !    5.5   0.0    0.0092        21       1      12 [.      93     104 ..      93     111 .. 0.86
   6 ?    4.1   0.0     0.027        60       1      16 [.     123     138 ..     123     143 .. 0.83
   7 !   11.9   0.1   7.4e-05      0.17       1      18 [.     149     166 ..     149     170 .. 0.87
   8 ?    4.1   0.0     0.027        61       3      14 ..     175     186 ..     173     200 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00036
                 TESEEEETSSBCBCHHHH.HHH CS
   PF00560.28  1 nLeeLdLsgNnltslpps.lsn 21
                 +L++LdLs N l++lp++ +++
  MMETSP0890-20130614|34319_1  2 KLKILDLSINILEELPHDmIRH 23
                 69**************998876 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00096
                 TESEEEETSSBCBCHHHHH CS
   PF00560.28  1 nLeeLdLsgNnltslppsl 19
                 n+++L L +N+ltslp  l
  MMETSP0890-20130614|34319_1 26 NIKTLKLGRNKLTSLPQ-L 43
                 789*************8.5 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0082
                 TESEEEETSS.BCBC CS
   PF00560.28  1 nLeeLdLsgN.nlts 14
                 +L++ d+s++ n+++
  MMETSP0890-20130614|34319_1 59 QLTVVDFSNCnNIEK 73
                 699*******99986 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 2.9e-05
                 TESEEEETSSBCBCHHHH.H CS
   PF00560.28  1 nLeeLdLsgNnltslpps.l 19
                 n+e+L Ls+N+lt++p+s l
  MMETSP0890-20130614|34319_1 70 NIEKLILSRNPLTTIPKSiL 89
                 789*************9944 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0092
                  TESEEEETSSBC CS
   PF00560.28   1 nLeeLdLsgNnl 12 
                  +L +LdLs++ +
  MMETSP0890-20130614|34319_1  93 KLVTLDLSYCGM 104
                  699*******76 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.027
                  TESEEEETSSBCBCHH CS
   PF00560.28   1 nLeeLdLsgNnltslp 16 
                  +L eL L+gN+++ + 
  MMETSP0890-20130614|34319_1 123 SLLELLLDGNQISAIG 138
                  5889********9775 PP

  == domain 7    score: 11.9 bits;  conditional E-value: 7.4e-05
                  TESEEEETSSBCBCHHHH CS
   PF00560.28   1 nLeeLdLsgNnltslpps 18 
                  +L++L+L++N+l+s+p  
  MMETSP0890-20130614|34319_1 149 KLRRLSLQYNQLSSFPAL 166
                  79*************986 PP

  == domain 8    score: 4.1 bits;  conditional E-value: 0.027
                  SEEEETSSBCBC CS
   PF00560.28   3 eeLdLsgNnlts 14 
                    LdL gN++++
  MMETSP0890-20130614|34319_1 175 NALDLKGNPISK 186
                  569*******95 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.014        33       2      17 .]       2      17 ..       1      17 [. 0.92
   2 !   10.2   0.1   0.00032      0.72       1      17 []      25      41 ..      25      41 .. 0.94
   3 !    8.3   0.4    0.0013       2.9       2      17 .]      70      85 ..      50      85 .. 0.94
   4 ?    5.2   0.0     0.014        31       2      13 ..      93     104 ..      92     109 .. 0.85
   5 ?    0.7   0.0      0.42   9.5e+02       2      15 ..     123     136 ..     122     138 .. 0.81
   6 !    9.0   0.1   0.00079       1.8       1      17 []     148     164 ..     148     164 .. 0.94
   7 ?    0.9   0.0      0.36   8.3e+02       5      14 ..     176     185 ..     174     191 .. 0.80
   8 ?   -3.6   0.0         6   1.4e+04       7      13 ..     215     221 ..     215     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.014
    PF13504.1  2 nLkeLdLsgnrLtsLP 17
                 +Lk LdLs n L++LP
  MMETSP0890-20130614|34319_1  2 KLKILDLSINILEELP 17
                 79**********9998 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00032
    PF13504.1  1 pnLkeLdLsgnrLtsLP 17
                 pn k+L L +n+LtsLP
  MMETSP0890-20130614|34319_1 25 PNIKTLKLGRNKLTSLP 41
                 6889************9 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0013
    PF13504.1  2 nLkeLdLsgnrLtsLP 17
                 n ++L Ls+n+Lt++P
  MMETSP0890-20130614|34319_1 70 NIEKLILSRNPLTTIP 85
                 56899*********99 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.014
    PF13504.1   2 nLkeLdLsgnrL 13 
                  +L +LdLs+++ 
  MMETSP0890-20130614|34319_1  93 KLVTLDLSYCGM 104
                  799*******85 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.42
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L eL L gn++  
  MMETSP0890-20130614|34319_1 123 SLLELLLDGNQISA 136
                  577999****9975 PP

  == domain 6    score: 9.0 bits;  conditional E-value: 0.00079
    PF13504.1   1 pnLkeLdLsgnrLtsLP 17 
                  p+L++L+L +n+L s+P
  MMETSP0890-20130614|34319_1 148 PKLRRLSLQYNQLSSFP 164
                  78************998 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.36
    PF13504.1   5 eLdLsgnrLt 14 
                   LdL gn++ 
  MMETSP0890-20130614|34319_1 176 ALDLKGNPIS 185
                  69*****984 PP

  == domain 8    score: -3.6 bits;  conditional E-value: 6
    PF13504.1   7 dLsgnrL 13 
                  dLs ++L
  MMETSP0890-20130614|34319_1 215 DLSVCGL 221
                  6888987 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.27   6.1e+02       2      12 ..       1      11 [.       1      15 [. 0.84
   2 !    9.3   0.0   0.00053       1.2       2      16 ..      25      39 ..      24      47 .. 0.91
   3 ?    4.4   0.1      0.02        47       2      13 ..      58      69 ..      56      73 .. 0.81
   4 !   10.3   0.1   0.00024      0.56       1      16 [.      68      83 ..      68      88 .. 0.92
   5 !    8.6   0.0   0.00084       1.9       1      14 [.      91     104 ..      91     114 .. 0.87
   6 ?    3.5   0.1     0.039        88       4      21 ..     124     141 ..     121     143 .. 0.80
   7 !    6.4   0.0    0.0044        10       2      16 ..     148     162 ..     147     169 .. 0.88
   8 ?    0.9   0.0      0.27   6.1e+02       7      16 ..     177     186 ..     172     192 .. 0.80
   9 ?   -3.2   0.0       5.5   1.3e+04       8      16 ..     215     223 .]     215     223 .] 0.83

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.27
    PF13516.1  2 knLtsLdLsnN 12
                 k+L+ LdLs N
  MMETSP0890-20130614|34319_1  1 KKLKILDLSIN 11
                 6899****966 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00053
    PF13516.1  2 knLtsLdLsnNqigd 16
                 +n+++L L++N++++
  MMETSP0890-20130614|34319_1 25 PNIKTLKLGRNKLTS 39
                 8***********996 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.02
    PF13516.1  2 knLtsLdLsnNq 13
                 ++Lt+ d+sn++
  MMETSP0890-20130614|34319_1 58 NQLTVVDFSNCN 69
                 589*******76 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.00024
    PF13516.1  1 lknLtsLdLsnNqigd 16
                 ++n++ L Ls+N+++ 
  MMETSP0890-20130614|34319_1 68 CNNIEKLILSRNPLTT 83
                 9************996 PP

  == domain 5    score: 8.6 bits;  conditional E-value: 0.00084
    PF13516.1   1 lknLtsLdLsnNqi 14 
                  l++L +LdLs+++ 
  MMETSP0890-20130614|34319_1  91 LSKLVTLDLSYCGM 104
                  689*********84 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.039
    PF13516.1   4 LtsLdLsnNqigdeGlsa 21 
                  L +L L +Nqi+ +G + 
  MMETSP0890-20130614|34319_1 124 LLELLLDGNQISAIGGED 141
                  557899*****9998765 PP

  == domain 7    score: 6.4 bits;  conditional E-value: 0.0044
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L+ L L++Nq+++
  MMETSP0890-20130614|34319_1 148 PKLRRLSLQYNQLSS 162
                  79**********986 PP

  == domain 8    score: 0.9 bits;  conditional E-value: 0.27
    PF13516.1   7 LdLsnNqigd 16 
                  LdL +N+i++
  MMETSP0890-20130614|34319_1 177 LDLKGNPISK 186
                  99******97 PP

  == domain 9    score: -3.2 bits;  conditional E-value: 5.5
    PF13516.1   8 dLsnNqigd 16 
                  dLs ++++d
  MMETSP0890-20130614|34319_1 215 DLSVCGLDD 223
                  799999987 PP

>> PF07725.7  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.033        75       3      15 ..      28      40 ..      26      40 .. 0.85
   2 ?    0.3   0.0      0.27   6.2e+02       9      15 ..      68      74 ..      68      83 .. 0.81
   3 ?   -0.9   0.0      0.67   1.5e+03       1       9 [.      93     101 ..      93     103 .. 0.87
   4 ?    5.7   0.1    0.0052        12       1      13 [.     149     161 ..     149     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.033
    PF07725.7  3 VeLnlrySklekL 15
                   L+l ++kl++L
  MMETSP0890-20130614|34319_1 28 KTLKLGRNKLTSL 40
                 569*******998 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.27
    PF07725.7  9 ySklekL 15
                 ++++ekL
  MMETSP0890-20130614|34319_1 68 CNNIEKL 74
                 6888887 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.67
    PF07725.7   1 nLVeLnlry 9  
                  +LV L+l y
  MMETSP0890-20130614|34319_1  93 KLVTLDLSY 101
                  69****976 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0052
    PF07725.7   1 nLVeLnlrySkle 13 
                  +L  L+l+y++l 
  MMETSP0890-20130614|34319_1 149 KLRRLSLQYNQLS 161
                  699********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.75
# Mc/sec: 712.52
//
Query:       MMETSP0890-20130614|34324_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-28   97.4   0.0      1e-27   96.5   0.0    1.4  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   7.6e-32     1e-27       9     279 ..      53     300 ..      50     303 .. 0.93

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 7.6e-32
   PF00248.16   9 lgndeisedealellraaleaGinlfDtAeyYgkgqseellgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslpsieevlealeelkkeGkirhiGvSnfsveileka..kkkkkvkivvvqveynll.neleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeid 279
                  +g +  ++d+a+++  +aleaG++ f  A +     +++ +++a+++s+ +r+e++i   v ++ ++ ++  r+  ++ +++ ++ lg+   D ++l+ p p+ +si  ++ a ee+k+   +++++vSnfs+ +l+ +  +++ +++++v+q+++ +  +  ++++lle  ++++v i a+spl                         +  +   +++k++g s+ q+alr++l  +++ +    +++ +++ en++++++ ls+e+++ +d
  MMETSP0890-20130614|34324_1  53 FGLQVYDDDKARRYTLTALEAGYRNFF-ASVL--AGNQRGFAKAIQESGIDRDELFICGSVLSNRAQGFDAARKVTRRGCNENIQDLGL-IPDQIMLDYPGPDPDSIRGQWTAFEEMKENNQVKSLAVSNFSPSQLDVIlkNNDFSIHPAVNQLPFGVGfKPGTNKRLLEENKQRNVLIQAWSPLRTVGP--------------------TSKALCADIGKKYGKSPQQVALRWIL--QRGATYTTQSTKQARIVENINVFDFSLSKEDMKLLD 300
                  455578999***************995.5555..7999999***********************************************6.78***********************************************888888999**************************************8433....................44567899******************..99******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:01.04
# Mc/sec: 700.47
//
Query:       MMETSP0890-20130614|34323_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-15   57.4   0.0    2.3e-15   56.9   0.0    1.1  1  PF01979.15 Amidohydrolase family
    5.2e-08   33.1   0.1    7.2e-08   32.6   0.1    1.1  1  PF13147.1  Amidohydrolase
      3e-07   30.1   0.0    4.3e-07   29.6   0.0    1.2  1  PF04909.9  Amidohydrolase
  ------ inclusion threshold ------
       0.01   14.7   0.0      0.013   14.3   0.0    1.2  1  PF02679.10 (2R)-phospho-3-sulfolactate synthase (ComA)


Domain annotation for each model (and alignments):
>> PF01979.15  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   6.7e-19   2.3e-15      44     308 ..       1     281 [.       1     299 [. 0.84

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 6.7e-19
                  -EEEEEEES-SSSH-HCHHHHHHHHHHHTTSSSBBCHB--EE-SSCHHHHHHHHGG---.TCGG....EHEEETTCHHHHHHHHHHHHHHHHHTHHHEECHHTTHCCHCHHHHHHHHHHHHEEETTEESSTCC.......................TTTB......TS.-TTTG.............STTSSC.CCHH.HHHHHHHHHHTTCEHC...HHHHHHCHHHHSCHHHHHHHHHHHH---EEEEEHHBTCHHH-TTHHHHHHHHHHHHHHHETTS--HGHHHHHHH............HHHHHHHHHTTHHH CS
   PF01979.15  44 Ttvldtpitsantsvalrkeideglaaapklealvelllkgevggraelgevvidraageeeeiegadlikvieaggkgakaidgvlpalaphdaqtvskeelkaevelaeeeeekeklgllvhihaaeasge.......................kevvehlt..gkspverl.............dhllll.knai.kggvtllahclhldde...aiellkergsgvahcplsnesvlhregrksllegdaqgigelgsggarlakvaeeagvklgtDgvaeelkvalllg..........lslkealrmaTinp 308
                  +++l+ p+t + +++a +++i +++ ++ +le+l++l+l++ +++                     +++ k +eag +g+    +++pa+a++++ +++++ l++ +++ ++ +e   l+ll+h+++ +++++                        +v+eh t  +++ +  +             +hll++ ++ + +gg++++  c+++ ++     +l++++ sg  +++l+++s++h  ++k+  +g+a g++ ++ ++  +a+++++  ++       ++l+++++++           +++++l++++  p
  MMETSP0890-20130614|34323_1   1 MPNLKPPVTTTDQALAYKERILAAIPPGQSLEPLMTLYLTDTTTE---------------------GEIQKAVEAGIAGV----KLYPAGATTNSDSGVTA-LEKPAKALRK-MEELGLPLLIHGEVVGSDIDifdreavfiatrleyliqtyprlRIVLEHCTtkEAVDF--VkragpnvaatitaHHLLYNrNALFaQGGIRPHFFCMPILKAemhRQALIEAATSGNPKFFLGTDSAPHSIENKECACGCA-GVFTAHAAIELYAEAFQSVDQL-------KQLEAFASFHgadfyglprnQDTITLLKKPCRIP 281
                  68999*********************************9999999.....................22356667777775....*****************.9999999999.566666**************77777777777777777777777666666664433333..266999999999*777777776654489************6635455566*******************************.******************7776.......********************99999999999877 PP

>> PF13147.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   2.1e-11   7.2e-08      74     295 ..      38     271 ..      17     276 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 2.1e-11
    PF13147.1  74 lrpsaatlealkalvellgaegvdfvkawlgldgggleallraaeeagvivlvghapaaaiegalekgldavellpdhsvaedlhlaellapgaglalhvlaaatdelaegvalaharglpvtple...............llvrdaaaa......gallkvlpplrlrserdqealaellaaG.vpdalgsDhapdase.........gpgdllhaelllaal.aglspq..ealrlatlnpArllGleddrGrl 295
                  + + ++t  +++++ve++ a++  ++++ ++ +++g++al+++a++ +++  +g                         v+ d+++ ++ a  ++++l+ l ++   l+  ++l h+    +++++               l +   +a+        ++ ++p l+   e  + al+e+  +G  +++lg+D+ap++ e         g  ++ ha+++l a+ +    q  ++ ++a++++A+++Gl+++  ++
  MMETSP0890-20130614|34323_1  38 YLTDTTTEGEIQKAVEAGIAGVKLYPAGATTNSDSGVTALEKPAKALRKMEELGLPLLI----------------HGEVVGSDIDIFDREAVFIATRLEYLIQTYPRLR--IVLEHCTTKEAVDFVkragpnvaatitahhL-LYNRNALfaqggiRPHFFCMPILK--AEMHRQALIEAATSGnPKFFLGTDSAPHSIEnkecacgcaG-VFTAHAAIELYAEaFQSVDQlkQLEAFASFHGADFYGLPRNQDTI 271
                  56678888999999999999999999999999999999999999999988888888888................4578999999999999999999999999999999..9999999999999999988877777777752.333333346788899999999999..*************************************9963.3333333333333455555445****************9876665 PP

>> PF04909.9  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.3e-10   4.3e-07      81     172 ..      42     139 ..      18     182 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.3e-10
                  CCHHHHHHHHHHT------EEEEECCCCCTT-HHHH....HHHHHHHHHHT--EEEE......H...HHHHCHHHHHHHHHHHCCC-TTS-EEETT---- CS
    PF04909.9  81 edavaelerrveelgfkGvklhphlgggdpdddrly....rpiyeaaeelglpvqiHtg....glggagetlraaqplylegvarrfPkLkfvlaHaGgp 172
                   ++  e+ ++v e+g+ Gvkl+p    ++ d+           ++++eelglp++iH g    + ++  ++   +    le +++ +P+L++vl H+   
  MMETSP0890-20130614|34323_1  42 TTTEGEIQKAV-EAGIAGVKLYPAGATTNSDSGVTAlekpAKALRKMEELGLPLLIH-GevvgSDIDIFDREAVFIATRLEYLIQTYPRLRIVLEHCTTK 139
                  45556777777.*************9999999888899*******************.87776444444444445555666789************9766 PP

>> PF02679.10  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.9e-06     0.013     166     230 ..      95     160 ..      41     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.9e-06
                  EE--------.--B-----B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHCCC------EEEEEGG CS
   PF02679.10 166 iiEarEsGkg.gltdsegevrkdlveeilerlglekliFEApqkkqqewlikklGpdVnLgnials 230
                  +i ++  G++ +++d+e  + ++ +e +++ ++  +++ E  + k  + ++k+ Gp+V   + a++
  MMETSP0890-20130614|34323_1  95 LIHGEVVGSDiDIFDREAVFIATRLEYLIQTYPRLRIVLEHCTTKEAVDFVKRAGPNVAATITAHH 160
                  56677789999***********************************************99544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.78
# Mc/sec: 961.62
//
Query:       MMETSP0890-20130614|34332_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   61.0   0.0      4e-16   59.3   0.0    1.8  2  PF00005.22 ABC transporter
    1.5e-06   27.7   0.6      2e-06   27.2   0.4    1.2  1  PF00664.18 ABC transporter transmembrane region
     0.0002   21.3   0.0      0.059   13.2   0.0    2.2  2  PF13304.1  AAA domain
    0.00024   20.2   0.0     0.0073   15.4   0.0    2.1  2  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0023   17.9   0.3      0.016   15.2   0.2    2.3  1  PF13401.1  AAA domain
     0.0091   15.3   0.7      0.023   14.0   0.5    1.6  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.029   14.1   0.0    1.7  1  PF13671.1  AAA domain
      0.011   16.3   0.0       0.02   15.5   0.0    1.6  1  PF13207.1  AAA domain
      0.011   15.9   0.0      0.028   14.5   0.0    1.7  1  PF13238.1  AAA domain
      0.011   15.9   0.1      0.037   14.3   0.1    1.8  1  PF13191.1  AAA ATPase domain
      0.063   13.0   0.2       0.54   10.1   0.2    2.5  1  PF13558.1  Putative exonuclease SbcCD, C subunit
       0.77    9.2   6.7        1.5    8.3   4.7    1.4  1  PF12114.3  Period protein 2/3C-terminal region
        1.6    8.4   6.1        1.1    8.9   0.1    3.4  2  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.7   2.8e+03      78      97 ..      95     114 ..      16     118 .. 0.78
   2 !   59.3   0.0   3.8e-19     4e-16       1     118 []     185     312 ..     185     312 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.7
                  -HHHH------------HHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
   PF00005.22  78 ldelldksrvstLSgGqkqr 97 
                  l el ++ +   LS+Gq+ r
  MMETSP0890-20130614|34332_1  95 LRELTKTANKLALSYGQASR 114
                  44444444556788888876 PP

  == domain 2    score: 59.3 bits;  conditional E-value: 3.8e-19
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHH..EEEE-------.--BHHHHHH----S--........-HHHHHHHHHH---HHHH--..........----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklr..igyipqdpllfpeltvrenldmakeekk........tdkrieevlekvgldelldk..........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  +T+ kll+++++p+ g +  dn   +l++  l++ r  +g++ q+p lf + +v+ n++++ ++++        +       +++  +++ +            + +st+SgG++qr+alAra++++p+ llLDE+t+
  MMETSP0890-20130614|34332_1 185 TTVGKLLLRLYDPQRGCVLADN--ISLPQFLLSEHRrrFGVVNQEPSLF-NRSVFANIAYGLPQQNnlkqrviaA-------AQRAAVHNVILAlpygydtvlgEGGSTISGGERQRLALARAVVRDPRCLLLDEATS 312
                  7889*****************6..34566444444447***********.************9988955555552.......44444444222235555557779*******************************96 PP

>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.4   1.9e-09     2e-06     181     273 ..       2      93 ..       1      95 [. 0.96

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.9e-09
   PF00664.18 181 avaeEalsgirtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtflsvisgelsvgtvfaflslglqlsg 273
                  a+a E+l++  tV+  ++e+ e+ r+++al+   +a++++a+ + l+ + + + + +  a+ l+f+++  v +ge s+g++ af s ++q+++
  MMETSP0890-20130614|34332_1   2 ALAAESLRAASTVQVHAAEAIEILRFNQALDVTIQAAYQAAADDVLIASSADACVAINDAIFLYFAASC-VARGEVSIGQFAAFRSALSQYQR 93 
                  6899*****************************************************88**********.**************999999885 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.6e-05     0.059       2      25 ..     174     205 ..     173     237 .. 0.77
   2 ?    5.7   0.0     0.011        11     237     272 ..     284     316 ..     272     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.6e-05
    PF13304.1   2 nviiGpNgsGKSnlLkaldflfr........d 25 
                  ++++G  gsGK+++ k l  l++        d
  MMETSP0890-20130614|34332_1 174 TALCGSSGSGKTTVGKLLLRLYDpqrgcvlaD 205
                  89******************988775544431 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.011
    PF13304.1 237 lSdGtkrllalltallsalekgsvlliDEpEngLHP 272
                   S G+++ lal+ a  +++   + ll+DE  ++L+ 
  MMETSP0890-20130614|34332_1 284 ISGGERQRLALARAVVRDP---RCLLLDEATSSLDV 316
                  499****************...************97 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.052        54      25      40 ..     172     187 ..     161     195 .. 0.85
   2 !   15.4   0.0   6.9e-06    0.0073     136     211 ..     283     354 ..     206     360 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.052
                  SEEEE--------HHH CS
                  xxxxxxxxxxxxxxxx RF
   PF02463.14  25 sftaivGpNGSGKsnv 40 
                  + ta+ G+ GSGK+ v
  MMETSP0890-20130614|34332_1 172 ETTALCGSSGSGKTTV 187
                  6799*********988 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 6.9e-06
                  G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-SEEE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemlekadklvgv 211
                  ++SgGe++ +ala   A+   +p++l llDe  + LD    ++v + l++ + ++  +vi++r +++  ad+++ +
  MMETSP0890-20130614|34332_1 283 TISGGERQRLALAR--AV-VRDPRCL-LLDEATSSLDVVSERLVQDALEACHYKCTTVVIAHRLSTIVAADAIIVM 354
                  689***99766664..33.4688887.79**************************************999998765 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.5e-05     0.016       7      37 ..     174     215 ..     168     340 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-05
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae...............k 37 
                  ++++G sG+GKTt+ + l+r +d +    +               +
  MMETSP0890-20130614|34332_1 174 TALCGSSGSGKTTVGKLLLRLYDPQ----RgcvladnislpqfllS 215
                  789*****************98643....13444655544333330 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.5   2.2e-05     0.023      19      39 ..     167     187 ..     161     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.2e-05
    PF13555.1  19 idpkgkntlltGasGsGKSTl 39 
                  i+++g++t+l G sGsGK+T+
  MMETSP0890-20130614|34332_1 167 IARAGETTALCGSSGSGKTTV 187
                  678999*************96 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.8e-05     0.029       3      46 ..     175     231 ..     174     278 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.8e-05
    PF13671.1   3 llvGlpGsGKstlaerllkklg...yvrlsqdt........lrkrlfg..tdqqskt 46 
                   l+G +GsGK+t+ + ll+  +   +++l  ++        +++r fg  ++ +s+ 
  MMETSP0890-20130614|34332_1 175 ALCGSSGSGKTTVGKLLLRLYDpqrGCVLADNIslpqfllsEHRRRFGvvNQEPSLF 231
                  58***********99887655445566666666777788776666666655555544 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.9e-05      0.02       3      24 ..     175     200 ..     174     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.9e-05
                  --B--TT---HHHHHHHHHHS....T CS
    PF13207.1   3 aitGppGsGKsTlakeLaerl....g 24 
                  a++G +GsGK+T+ k+L + +    g
  MMETSP0890-20130614|34332_1 175 ALCGSSGSGKTTVGKLLLRLYdpqrG 200
                  689**************887733333 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.7e-05     0.028       3      23 ..     176     200 ..     175     227 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.7e-05
    PF13238.1   3 itGtpGvGKtTlakeLaerl....g 23 
                  ++G +G+GKtT++k+L +      g
  MMETSP0890-20130614|34332_1 176 LCGSSGSGKTTVGKLLLRLYdpqrG 200
                  89**************654244444 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.5e-05     0.037      20     157 ..     169     328 ..     162     339 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.5e-05
    PF13191.1  20 segsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.....lpysaiiqa....lrellrqlltelaaelggwreallaalga................lipelegiiglqalvalldaalartrrpklvlvlDD.lqwadresldlLealler 157
                  ++g+    + G sG+GK+++ + l++    +r+ ++a +++++++       +++++ q      r+++++++  l ++    +++++aa  a                l+  ++ i g + +  +l +a+ r +    +l+lD+    +d  s+ l++++le+
  MMETSP0890-20130614|34332_1 169 RAGE-TTALCGSSGSGKTTVGKLLLRLYDPQRGCVLADNISLPQFLlsehrRRFGVVNQEpslfNRSVFANIAYGLPQQNNLKQRVIAAAQRAavhnvilalpygydtvLGEGGSTISGGERQRLALARAVVRDP---RCLLLDEaTSSLDVVSERLVQDALEA 328
                  4555.7789************886666666666666666666666677887555555555888855555555555555555555555555555555577777766655555555555555555555555555555...89999986777788888888888887 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00051      0.54      33      87 ..     284     325 ..     271     329 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00051
    PF13558.1  33 lSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllel 87 
                   SGGE+         +Ala ++ +       +r ++LDEA+s+lD  + + + ++
  MMETSP0890-20130614|34332_1 284 ISGGER-------QRLALARAVVR------DPRCLLLDEATSSLDVVSERLVQDA 325
                  566666.......34455555555......59*************8766655555 PP

>> PF12114.3  Period protein 2/3C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.7    0.0014       1.5       6      66 ..     404     465 ..     399     466 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0014
    PF12114.3   6 ssssdlldlllqedsqsgtgsaasgsgssksss..lgsgSnkgsssgsssgssnsskyfgssd 66 
                  s s +ll+  l ++s+sg++ ++s ++  +++s  l+s+ + g++s ++ +ss+ss y +++d
  MMETSP0890-20130614|34332_1 404 SRSHPLLS-ALDDQSDSGFQHTQSYDSTGGKESpyLSSAATAGQTSPRHLESSSSSDYEEDED 465
                  55666666.78899**********99998888899***********************99887 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1     0.001       1.1      13      48 ..     174     204 ..     166     209 .. 0.79
   2 ?   -0.9   1.5       1.2   1.2e+03      38      62 ..     296     321 ..     235     381 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.001
    PF13245.1  13 lvvtGgPGtGKTttlaaiiaallaarekpgrsvllv 48 
                  +++ G  G+GKT t+ ++  +l++      r+++l+
  MMETSP0890-20130614|34332_1 174 TALCGSSGSGKT-TVGKLLLRLYDP----QRGCVLA 204
                  4567999*****.**********65....6667765 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.2
    PF13245.1  38 rekp.grsvllvaptgraakrlserl 62 
                  r+++ + ++ll+   +  ++ +serl
  MMETSP0890-20130614|34332_1 296 RAVVrDPRCLLLDEATSSLDVVSERL 321
                  33333446666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.87u 0.36s 00:00:01.23 Elapsed: 00:00:00.78
# Mc/sec: 1434.74
//
Query:       MMETSP0890-20130614|34359_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-16   56.8  10.9    7.9e-05   22.4   0.0    4.5  4  PF13431.1  Tetratricopeptide repeat
    9.2e-15   53.9  15.9    3.8e-08   32.7   0.6    4.0  4  PF13414.1  TPR repeat
      8e-12   44.0   9.8    2.4e-05   23.7   0.0    5.3  5  PF07719.12 Tetratricopeptide repeat
    3.4e-10   39.5   5.2    0.00036   20.7   0.1    4.6  4  PF13428.1  Tetratricopeptide repeat
    1.9e-09   37.8   9.6      8e-05   23.0   0.2    3.2  3  PF13432.1  Tetratricopeptide repeat
    1.2e-08   34.0   6.9     0.0011   18.3   0.0    5.1  5  PF00515.23 Tetratricopeptide repeat
    2.6e-08   32.9   3.7    0.00017   20.9   0.0    5.0  5  PF13181.1  Tetratricopeptide repeat
    1.7e-05   24.5   7.9     0.0017   18.1   1.1    3.2  4  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   14.8   4.3       0.48   10.2   0.1    3.0  3  PF13371.1  Tetratricopeptide repeat
      0.081   11.8   4.2       0.67    8.7   0.4    2.6  2  PF02259.18 FAT domain
       0.24   11.1   1.6        6.9    6.6   0.0    3.4  4  PF13176.1  Tetratricopeptide repeat
       0.48   10.8   2.7        4.6    7.8   0.0    3.3  3  PF13174.1  Tetratricopeptide repeat
       0.66   10.0   7.8       0.25   11.3   0.2    2.8  3  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.5    0.0001      0.11       2      22 ..      25      45 ..      24      59 .. 0.87
   2 !   13.1   0.0   7.3e-05     0.077       1      28 [.      74     101 ..      74     107 .. 0.87
   3 !   22.4   0.0   7.5e-08   7.9e-05       1      33 [.     108     140 ..     108     141 .. 0.96
   4 !   13.1   0.2     7e-05     0.074       2      26 ..     143     168 ..     142     176 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.0001
    PF13431.1  2 yekaleldPnnadaynnLAel 22
                 ++ al+ +Pnna+a +n+A++
  MMETSP0890-20130614|34359_1 25 FKLALQANPNNANAAHNFAYF 45
                 5669***************96 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 7.3e-05
    PF13431.1   1 lyekaleldPnnadaynnLAelllnnGd 28 
                  l++ al+++Pn+a+a+  +A+l +++G 
  MMETSP0890-20130614|34359_1  74 LLLTALKINPNHAPAHETYALLEQRRGH 101
                  5789*****************9999886 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 7.5e-08
    PF13431.1   1 lyekaleldPnnadaynnLAelllnnGdleeAe 33 
                  +y+ +++ +Pn + +++++A+ll +++d+++A+
  MMETSP0890-20130614|34359_1 108 HYLASIDANPNRVSSHCRYAQLLIRKNDFDTAK 140
                  69*****************************97 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 7e-05
    PF13431.1   2 yekaleldPnn.adaynnLAelllnn 26 
                  +ekalel P+n +  ++ LA ++ n+
  MMETSP0890-20130614|34359_1 143 LEKALELRPDNaPRTLFLLAHIYENR 168
                  79*********************986 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.3    0.0018       1.9      25      45 ..      24      44 ..      22      52 .. 0.80
   2 !   17.1   0.6   2.7e-06    0.0028      20      69 .]      69     117 ..      65     117 .. 0.93
   3 !   32.7   0.6   3.6e-11   3.8e-08       9      69 .]      92     151 ..      88     151 .. 0.92
   4 !   27.7   0.9   1.3e-09   1.3e-06       6      65 ..     123     182 ..     118     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0018
    PF13414.1 25 ayekAleldpnnaelyynlAl 45
                 +++ Al+ +pnna++  n A+
  MMETSP0890-20130614|34359_1 24 HFKLALQANPNNANAAHNFAY 44
                 8999**********7766664 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.7e-06
    PF13414.1  20 deAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  d+A +++  Al+++pn+a ++   Al+ +++g + + A+++y  ++  +P
  MMETSP0890-20130614|34359_1  69 DQAMKLLLTALKINPNHAPAHETYALLEQRRG-HIDIAAKHYLASIDANP 117
                  89******************************.89999999999998877 PP

  == domain 3    score: 32.7 bits;  conditional E-value: 3.6e-11
    PF13414.1   9 lGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                   +    ++g  d A ++y  +++ +pn  + +++ A+++++++ d++ A  ++ekAlel+P
  MMETSP0890-20130614|34359_1  92 YALLEQRRGHIDIAAKHYLASIDANPNRVSSHCRYAQLLIRKN-DFDTAKFHLEKALELRP 151
                  5666778999*******************************97.8**************98 PP

  == domain 4    score: 27.7 bits;  conditional E-value: 1.3e-09
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnn.aelyynlAlaylklgkdyeeAledyekAl 65 
                  + + ++ l++++d+d A  ++ekAlel+p+n +  ++ lA++y+++   y   le ++ Al
  MMETSP0890-20130614|34359_1 123 HCRYAQLLIRKNDFDTAKFHLEKALELRPDNaPRTLFLLAHIYENRE-AYNYSLELINSAL 182
                  6678999**********************99455***********85.8998898888887 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.19     2e+02      23      34 .]      24      35 ..      22      35 .. 0.91
   2 !    8.4   0.0    0.0019         2      16      34 .]      67      85 ..      59      85 .. 0.89
   3 !    9.4   0.1   0.00088      0.93       2      33 ..      87     118 ..      86     119 .. 0.92
   4 !   23.7   0.0   2.3e-08   2.4e-05       4      34 .]     123     153 ..     120     153 .. 0.95
   5 ?    2.8   0.0      0.11   1.2e+02       2      28 ..     156     182 ..     155     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.19
                 HHHHHHHH-TTS CS
   PF07719.12 23 afekAleldPnn 34
                 +f+ Al+ +Pnn
  MMETSP0890-20130614|34359_1 24 HFKLALQANPNN 35
                 8999******98 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0019
                 -HHHHHHHHHHHHHH-TTS CS
   PF07719.12 16 dyeeAleafekAleldPnn 34
                 + ++A +++  Al+++Pn+
  MMETSP0890-20130614|34359_1 67 QEDQAMKLLLTALKINPNH 85
                 5689*************97 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00088
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                   a+   +l+  ++g+ + A++++  ++  +Pn
  MMETSP0890-20130614|34359_1  87 PAHETYALLEQRRGHIDIAAKHYLASIDANPN 118
                  5788899999*********************8 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 2.3e-08
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                  +++ ++++++++d++ A+ ++ekAlel P+n
  MMETSP0890-20130614|34359_1 123 HCRYAQLLIRKNDFDTAKFHLEKALELRPDN 153
                  899**************************98 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAl 28 
                  + l++l+ +y+++  y+  le+ + Al
  MMETSP0890-20130614|34359_1 156 RTLFLLAHIYENREAYNYSLELINSAL 182
                  679*********999998888877776 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.18   1.9e+02      23      42 ..      24      43 ..      19      45 .. 0.82
   2 !   10.8   0.1   0.00056      0.59      18      43 ..      69      94 ..      57      95 .. 0.91
   3 !   11.3   0.2   0.00037      0.38       3      44 .]      88     129 ..      86     129 .. 0.92
   4 !   20.7   0.1   3.5e-07   0.00036       6      42 ..     125     162 ..     122     164 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.18
    PF13428.1 23 llrralalaPddaealllLa 42
                 +++ al+++P++a a ++ a
  MMETSP0890-20130614|34359_1 24 HFKLALQANPNNANAAHNFA 43
                 57779********9998766 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00056
    PF13428.1 18 deAiallrralalaPddaealllLar 43
                 d+A++ll  al+ +P++a a+  +a 
  MMETSP0890-20130614|34359_1 69 DQAMKLLLTALKINPNHAPAHETYAL 94
                 89******************999885 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00037
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  a+  +a +  ++G+ d A++++ + + ++P++   + ++a+l
  MMETSP0890-20130614|34359_1  88 AHETYALLEQRRGHIDIAAKHYLASIDANPNRVSSHCRYAQL 129
                  667899999****************************99997 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 3.5e-07
    PF13428.1   6 alarallalGdpdeAiallrralalaPdda.ealllLa 42 
                  ++a++l++ +d+d A  +l++al+l Pd+a + l+lLa
  MMETSP0890-20130614|34359_1 125 RYAQLLIRKNDFDTAKFHLEKALELRPDNApRTLFLLA 162
                  69**************************9648999988 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.25   2.6e+02      20      43 ..      25      48 ..      22      63 .. 0.79
   2 !   23.0   0.2   7.6e-08     8e-05      14      63 ..      69     118 ..      68     120 .. 0.95
   3 !   17.3   0.3   4.7e-06     0.005       2      55 ..     125     179 ..     124     190 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.25
    PF13432.1 20 leaalalaPeaaeallllaeallr 43
                 ++ al ++P +a+a  + a + l+
  MMETSP0890-20130614|34359_1 25 FKLALQANPNNANAAHNFAYFILA 48
                 77899999******9999987665 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 7.6e-08
    PF13432.1  14 deAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  d+A ++l +al+ +P +a a+  +a +  r+g+ d Aa+ + a ++++P+
  MMETSP0890-20130614|34359_1  69 DQAMKLLLTALKINPNHAPAHETYALLEQRRGHIDIAAKHYLASIDANPN 118
                  7899**********************************8888888*9997 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 4.7e-06
    PF13432.1   2 alArallraGdydeAlaaleaalalaPe.aaeallllaeallrlgrldeAaallr 55 
                  ++A++l+r +d+d A  +le+al+l P+ a++ l+lla ++  +  +  +++l++
  MMETSP0890-20130614|34359_1 125 RYAQLLIRKNDFDTAKFHLEKALELRPDnAPRTLFLLAHIYENREAYNYSLELIN 179
                  689***********************99799999999988887777765555555 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.092        97      23      34 .]      24      35 ..      22      35 .. 0.92
   2 !    7.2   0.0    0.0034       3.5      18      34 .]      69      85 ..      67      85 .. 0.93
   3 ?    1.3   0.0      0.24   2.5e+02      12      33 ..      97     118 ..      93     119 .. 0.85
   4 !   18.3   0.0     1e-06    0.0011       8      34 .]     127     153 ..     120     153 .. 0.89
   5 ?    4.3   0.0     0.028        30       2      28 ..     156     182 ..     155     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.092
                 HHHHHHHHHTTH CS
   PF00515.23 23 yyekALelnPnn 34
                 +++ AL+ nPnn
  MMETSP0890-20130614|34359_1 24 HFKLALQANPNN 35
                 8999*******8 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHTTH CS
   PF00515.23 18 deAleyyekALelnPnn 34
                 d+A +    AL++nPn+
  MMETSP0890-20130614|34359_1 69 DQAMKLLLTALKINPNH 85
                 89*************97 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.24
                  HHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23  12 lklgkydeAleyyekALelnPn 33 
                  ++ g  d A ++y   +  nPn
  MMETSP0890-20130614|34359_1  97 QRRGHIDIAAKHYLASIDANPN 118
                  56788899************98 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 1e-06
                  HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   8 GnaylklgkydeAleyyekALelnPnn 34 
                  ++++ +++++d A  + ekALel+P+n
  MMETSP0890-20130614|34359_1 127 AQLLIRKNDFDTAKFHLEKALELRPDN 153
                  788999*******************98 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.028
                  HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekAL 28 
                  ++l+ l+++y + + y+  le  + AL
  MMETSP0890-20130614|34359_1 156 RTLFLLAHIYENREAYNYSLELINSAL 182
                  7899************99999877776 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.1   2.2e+03      23      34 .]      24      35 ..      22      35 .. 0.85
   2 ?    3.1   0.0     0.084        88      16      34 .]      67      85 ..      63      85 .. 0.88
   3 ?    3.2   0.0     0.074        78       3      33 ..      88     119 ..      86     120 .. 0.84
   4 !   20.9   0.0   1.7e-07   0.00017       3      34 .]     122     153 ..     120     153 .. 0.93
   5 ?    2.3   0.0      0.14   1.5e+02       2      13 ..     156     167 ..     155     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.1
                 HHH---HHHH.H CS
    PF13181.1 23 ylekalelkprn 34
                 +++ al+ +p+n
  MMETSP0890-20130614|34359_1 24 HFKLALQANPNN 35
                 7999****9975 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.084
                 -HHHHHHHHH---HHHH.H CS
    PF13181.1 16 dydkAkeylekalelkprn 34
                 + d+A++ l  al+++p++
  MMETSP0890-20130614|34359_1 67 QEDQAMKLLLTALKINPNH 85
                 6799*************75 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.074
                  -TTT---HHHHTT-HHHHHHHHH---HHHH.. CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp.r 33 
                  a+   ++++   G +d A +++   ++ +p r
  MMETSP0890-20130614|34359_1  88 AHETYALLEQRRGHIDIAAKHYLASIDANPnR 119
                  566678889999***************99944 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 1.7e-07
                  -TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkprn 34 
                  ++++ ++++  ++d+d Ak +lekalel p+n
  MMETSP0890-20130614|34359_1 122 SHCRYAQLLIRKNDFDTAKFHLEKALELRPDN 153
                  57899************************975 PP

  == domain 5    score: 2.3 bits;  conditional E-value: 0.14
                  --TTT---HHHH CS
    PF13181.1   2 kayynlGdiYrq 13 
                  +++++l++iY++
  MMETSP0890-20130614|34359_1 156 RTLFLLAHIYEN 167
                  689*******97 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.3     0.055        58      22      74 ..      69     114 ..      59     118 .. 0.70
   2 !   17.5   0.4   2.5e-06    0.0026       7      77 ..      88     151 ..      82     152 .. 0.86
   3 !   18.1   1.1   1.6e-06    0.0017       3      71 ..     118     180 ..     115     182 .. 0.83
   4 ?    5.1   0.2     0.018        19       4      34 ..     154     184 ..     150     193 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.055
    PF13424.1  22 deAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                  d+A +l+ +al++        p+ a a   +a l +++g  d A +++  +++
  MMETSP0890-20130614|34359_1  69 DQAMKLLLTALKIN-------PNHAPAHETYALLEQRRGHIDIAAKHYLASID 114
                  78888888888883.......33366677777777777777777777766665 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2.5e-06
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  ++  +al+ +r g  d A ++y  ++       d++p+++++   +a+l+ +++d+d A+ +lekAle+++
  MMETSP0890-20130614|34359_1  88 AHETYALLEQRRGHIDIAAKHYLASI-------DANPNRVSSHCRYAQLLIRKNDFDTAKFHLEKALELRP 151
                  67778888888888888888888888.......568999*****************************986 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.6e-06
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylek 71 
                  +  ++++++a++l r+ d+d A  ++ekalel+    +d++   r+l+ la +y+ ++ y  +le+ + 
  MMETSP0890-20130614|34359_1 118 NRVSSHCRYAQLLIRKNDFDTAKFHLEKALELR----PDNA--PRTLFLLAHIYENREAYNYSLELINS 180
                  5667899***********************997....4543..6899*******999998887777655 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.018
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalel 34 
                    ++l+ la++++  + y  +lel++ al  
  MMETSP0890-20130614|34359_1 154 APRTLFLLAHIYENREAYNYSLELINSALVQ 184
                  4589999999999999999999999999855 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         2   2.1e+03      44      66 ..      34      58 ..      27      61 .. 0.71
   2 ?   10.2   0.1   0.00046      0.48      12      62 ..      69     119 ..      66     129 .. 0.88
   3 ?    6.3   0.0    0.0071       7.5      26      64 ..     117     156 ..     112     165 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2
    PF13371.1 44 claaAaedLeafl..elcpdapdae 66
                 + a Aa+ + +f+   +c  ap+a+
  MMETSP0890-20130614|34359_1 34 NNANAAHNFAYFIlaSSCTPAPAAA 58
                 5678999999999776676666665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00046
    PF13371.1  12 erALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpda 62 
                  ++A++ +   l ++P+++  +  ++ll++++g+   Aa+ + a ++  p++
  MMETSP0890-20130614|34359_1  69 DQAMKLLLTALKINPNHAPAHETYALLEQRRGHIDIAAKHYLASIDANPNR 119
                  568888888999**************************9999998888876 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0071
    PF13371.1  26 PddpyerRDrGlllaqlgclaaAaedLeaflelcp.dapd 64 
                  P++++ +  ++ ll + +++  A   Le +lel p +ap 
  MMETSP0890-20130614|34359_1 117 PNRVSSHCRYAQLLIRKNDFDTAKFHLEKALELRPdNAPR 156
                  66777777789999*********************55554 PP

>> PF02259.18  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2      0.02        21     267     304 ..      61      98 ..      11     110 .. 0.77
   2 ?    8.7   0.4   0.00064      0.67     136     242 ..     110     214 ..     106     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.02
   PF02259.18 267 snweqekkdeilkaystatefdpqwykawhswalanfe 304
                  ++ ++ + d+++k+ +ta +++p+++ a++++al +++
  MMETSP0890-20130614|34359_1  61 NDEYTFQEDQAMKLLLTALKINPNHAPAHETYALLEQR 98 
                  44677788999999999999999999999999998876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00064
   PF02259.18 136 lskirgpkedakmwlkfanlcRksgrlslAeksLkellgedkseedd....lpqvtyaylkylWakgeqeeAlqkLreftskelskdlesasdselksgltekleeisstn 242
                  l  i ++  +++   ++a+l  + + +++A+ +L ++l+ ++++ +     l+++   +  y ++ +  ++Al +L   t+    ++++ ++d++++++   + +++s++n
  MMETSP0890-20130614|34359_1 110 LASIDANPNRVSSHCRYAQLLIRKNDFDTAKFHLEKALELRPDNAPRtlflLAHIYENREAYNYSLELINSALVQLLSRTN----NNIKNSKDDNITTQK--DVSQTSERN 214
                  5556666667777889**********************9887777768887777777777777777777888877777777....333345566666554..555555555 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.4   6.8e+03      16      34 ..      69      85 ..      69      86 .. 0.71
   2 ?   -0.6   0.0       1.3   1.3e+03       8      28 ..      95     113 ..      92     120 .. 0.76
   3 ?    6.6   0.0    0.0066       6.9       2      31 ..     123     152 ..     122     156 .. 0.86
   4 ?    1.0   0.1      0.39   4.1e+02       1      15 [.     157     171 ..     157     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 6.4
    PF13176.1 16 ekAielyeraLaltkdpld 34
                 ++A +l+    al+  p++
  MMETSP0890-20130614|34359_1 69 DQAMKLLLT--ALKINPNH 85
                 688888888..77666665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.3
    PF13176.1   8 lysrlgdyekAielyeraLal 28 
                  l +r+g  + A+++y +   +
  MMETSP0890-20130614|34359_1  95 LEQRRGHIDIAAKHYLA--SI 113
                  56789999999999998..44 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0066
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltkd 31 
                  +++ a+l  r +d+++A  ++e+aL+l+ d
  MMETSP0890-20130614|34359_1 123 HCRYAQLLIRKNDFDTAKFHLEKALELRPD 152
                  78889******************8888766 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.39
    PF13176.1   1 allnLarlysrlgdy 15 
                  +l+ La++y+++  y
  MMETSP0890-20130614|34359_1 157 TLFLLAHIYENREAY 171
                  6899*****987655 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.49   5.2e+02      15      33 .]      67      85 ..      57      85 .. 0.88
   2 ?   -1.9   0.0       5.4   5.7e+03       7      31 ..      93     117 ..      92     118 .. 0.65
   3 ?    7.8   0.0    0.0044       4.6       5      33 .]     125     153 ..     125     153 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHHH-TT- CS
    PF13174.1 15 dtdeAlealerlikeyPdS 33
                 + d+A+++l   +k  P++
  MMETSP0890-20130614|34359_1 67 QEDQAMKLLLTALKINPNH 85
                 789**********999996 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 5.4
                  HHHHHHHHHHHHHHHHHHHHHHH-T CS
    PF13174.1   7 alsyyklgdtdeAlealerlikeyP 31 
                  al+ ++ g+ d A + +   i+  P
  MMETSP0890-20130614|34359_1  93 ALLEQRRGHIDIAAKHYLASIDANP 117
                  5666666799988887765555555 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0044
                  HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   5 klalsyyklgdtdeAlealerlikeyPdS 33 
                  ++a+++++ +d+d A+  le+ ++  Pd+
  MMETSP0890-20130614|34359_1 125 RYAQLLIRKNDFDTAKFHLEKALELRPDN 153
                  689999*988*****************95 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.6   1.7e+03      10      33 ..      23      44 ..      19      52 .. 0.54
   2 ?   10.7   2.0   0.00039      0.41      24      80 ..     121     177 ..      61     181 .. 0.77
   3 ?   11.3   0.2   0.00024      0.25       2      51 ..     133     184 ..     132     198 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.6
                 HHHHHHCCC-ST-HHHHCHHHHHH CS
    PF12895.2 10 flaekllaespkdpedaylyalAl 33
                 +++ ++l+ +p++ ++a+ +  A+
  MMETSP0890-20130614|34359_1 23 LHFKLALQANPNNANAAHNF--AY 44
                 56667777777543444443..33 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00039
                  HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCB.HHHHHHHHHHHHHTT-HHHHCCC CS
    PF12895.2  24 edaylyalAlclylngeykrAyellrk.leldsss.lgcryllArcllklgkydeAiav 80 
                  ++   y  A+ l + +++++A + l+k lel++ + + + +llA+ ++  + y+  +++
  MMETSP0890-20130614|34359_1 121 SSHCRY--AQLLIRKNDFDTAKFHLEKaLELRPDNaPRTLFLLAHIYENREAYNYSLEL 177
                  333445..999999999999999999998888866477777889999887777765555 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00024
                  TT-HHHHHHHHHHHCCC-ST-H.HHHCHHHHHHHHHH---HHHHHHHHHC...T CS
    PF12895.2   2 qhnyknAlflaekllaespkdp.edaylyalAlclylngeykrAyellrk...l 51 
                  ++++++A f++ek+l++ p +      l++lA  + + + y+  +el++    +
  MMETSP0890-20130614|34359_1 133 KNDFDTAKFHLEKALELRPDNApR--TLFLLAHIYENREAYNYSLELINSalvQ 184
                  6899*************9954334..55555**********8888877655541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.84
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|34355_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.1   0.1        7.4    6.4   0.0    2.5  2  PF08783.6 DWNN domain


Domain annotation for each model (and alignments):
>> PF08783.6  DWNN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00054       7.4      48      71 ..     362     385 ..     357     387 .. 0.81
   2 ?    2.9   0.0    0.0071        97      52      73 ..     467     489 ..     460     490 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00054
    PF08783.6  48 naqtkeeyeddnalIprsssVivr 71 
                  ++q++ +ye+   +Ip++s+V+ +
  MMETSP0890-20130614|34355_1 362 QQQQQPAYEQRRCVIPQNSRVVLK 385
                  3455668**************975 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0071
    PF08783.6  52 kee.yeddnalIprsssVivrRi 73 
                  +ee +   +++ pr++ V+v+R+
  MMETSP0890-20130614|34355_1 467 DEEfWAASDTVAPRGTVVLVSRV 489
                  455344678899**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.45s 00:00:01.35 Elapsed: 00:00:01.40
# Mc/sec: 908.90
//
Query:       MMETSP0890-20130614|34383_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-65  219.6   0.0    4.9e-65  219.2   0.0    1.1  1  PF01207.12 Dihydrouridine synthase (Dus)
    5.3e-05   22.1   0.2    7.7e-05   21.6   0.1    1.2  1  PF00478.20 IMP dehydrogenase / GMP reductase domain
     0.0016   17.6   0.0     0.0023   17.1   0.0    1.3  1  PF00977.16 Histidine biosynthesis protein
      0.002   17.0   0.0      0.011   14.6   0.0    1.9  1  PF01180.16 Dihydroorotate dehydrogenase
     0.0028   16.4   0.1     0.0037   16.0   0.1    1.1  1  PF01070.13 FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.015   14.4   0.1       0.17   11.0   0.0    2.1  2  PF03932.9  CutC family
      0.046   13.4   0.1      0.079   12.7   0.0    1.4  1  PF02310.14 B12 binding domain
       0.11   11.8   0.9        3.8    6.9   0.1    3.1  2  PF12554.3  Mitotic-spindle organizing gamma-tubulin ring associated
       0.12   11.3   0.1       0.17   10.8   0.1    1.3  1  PF03060.10 Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> PF01207.12  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.0   3.2e-68   4.9e-65       5     285 ..       1     279 [.       1     285 [. 0.85

  Alignments for each domain:
  == domain 1    score: 219.2 bits;  conditional E-value: 3.2e-68
   PF01207.12   5 magvtdlpfRellrevgatdlvvtemvtakaivreekvtir...mlseleeetplalQllgsdpallaeaAklvadlgadeIDlNvGCPakkvtkggaGaaLlrkpdlvaqivkavvkave.ipvtvkirigiddskenalelarrveaaGaqaltvHgRtraqnyeg..tadweaIkevkqavs..ipviaNGdikdaedaqailaetGadgvMigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkarkhlawylkg...lkaaaelr 285
                  m+ +++l+fR l+r+ ga+ l++t+m +ak ++++ek++++   +l++ +e++p+ +Ql+g+dp +l++a  + +d  +d+ID+N+GCP+  +++g++Ga+Ll +pdlv++i++++++ ++ +pvt+kir+    + e ++ l+ ++++aG++ +t+HgRtr  +     +a+w+a++e+ +a++  ip+iaNG+i++a d++++l+ t ad+vM+++++l +P++f  +  ++t++          ++++ + l+  ++  +e+++l +ar hl ++l +    +++a+lr
  MMETSP0890-20130614|34383_1   1 MVSQSELAFRMLCRRHGAE-LTYTPMHNAKMLLKSEKYRHDvnlDLQCVKEDRPRFVQLCGDDPSTLLKAGLMLED-RCDAIDINCGCPQGIAKRGHYGAFLLDEPDLVCDIISTLAQGLQkVPVTIKIRLLDAYDPEPTIALCHKLCDAGVALITIHGRTRDMKGHLvgEANWQALAEIVKALQhrIPIIANGGIEYAYDIDRCLKATRADAVMVSEACLADPTVFS-TGLADTSK----------IQLALQYLELCKSLASEGTSLGDARAHLVKLLFEilqTQGNAQLR 279
                  88899**************.*****************998633378888999************************.*****************************************9998****************************************99998778*********************************************************8.22333333..........344444444444444444444444444444443333355555555 PP

>> PF00478.20  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   5.1e-08   7.7e-05     186     239 ..     159     214 ..     144     221 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.1e-08
                  HHHHC-..----HHHHHHHHHHHHTTCC-EEEE-----SHHHHHHHHH--.--EEEE CS
                  xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   PF00478.20 186 Trevag..vGvpqltAvlevaeaakklgvpviaDGGirnsgdiakAlaaG.AsavMl 239
                  Tr + g  vG +   A++e+++a + + +p+ia GGi++ +di + l+a  A+avM+
  MMETSP0890-20130614|34383_1 159 TRDMKGhlVGEANWQALAEIVKALQ-HRIPIIANGGIEYAYDIDRCLKATrADAVMV 214
                  66666655899999********998.88*******************87449****8 PP

>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0023      60     128 ..     170     239 ..     148     267 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-06
                  HHHHHHHHHHTT-S..SEEEEE----SHHHHHHHHH--.--EEEESHHHHH-THHHHHHHHH--TTTEEEEE CS
   PF00977.16  60 anldlveeiaeevf..iplqvGgGIrsledveelleag.adkviigtaavknpelikelaekfgsqkivvai 128
                  an ++++ei+++++  ip+   gGI    d+++ l+a  ad v+++ a + +p+++++ +     +ki +a+
  MMETSP0890-20130614|34383_1 170 ANWQALAEIVKALQhrIPIIANGGIEYAYDIDRCLKATrADAVMVSEACLADPTVFSTGLADT--SKIQLAL 239
                  56677777777776669*****************99877999***********9999887763..3455555 PP

>> PF01180.16  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     7e-06     0.011     221     261 ..     164     204 ..      61     227 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7e-06
                  --TTHHHHHHHHHHHHHHTTTTSEEEE--------HHHHHH CS
   PF01180.16 221 GkalkdialkvirelykrlkkeipiIgvGGiesgeDaleki 261
                  G+ + +   + + e+ k l+++ipiI+ GGie + D    +
  MMETSP0890-20130614|34383_1 164 GHLVGEANWQALAEIVKALQHRIPIIANGGIEYAYDIDRCL 204
                  55566667788999********************9964333 PP

>> PF01070.13  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.5e-06    0.0037     265     312 ..     170     218 ..     139     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.5e-06
                  --GGGHHHHHHHHT.SS--EE--------HHHHHH.H----EEEE--TT CS
   PF01070.13 265 atidvLpeivaavgdklevlvDgGirrGsDvlkal.AlGAdavlvGRpf 312
                  a  ++L eiv+a+++++++++ gGi+   D+ + l A  Adav+v  + 
  MMETSP0890-20130614|34383_1 170 ANWQALAEIVKALQHRIPIIANGGIEYAYDIDRCLkATRADAVMVSEAC 218
                  66789*********9****************999878889999997765 PP

>> PF03932.9  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.17     103     189 ..     109     205 ..      97     219 .. 0.70
   2 ?    1.2   0.0      0.11   1.7e+02      21      35 ..     239     253 ..     222     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
                  HHHHHHHHH------EE-GGGGGSS-HHHHH...HHHHH----EEE-----SSST......---HHHHHHHHSSSSSE.EEE-----.TTTHHHHHH CS
    PF03932.9 103 kaleklieaaegLgvtfHrAfDvvadpeeal...eqlielgvervLtsGqkssal......egleklaeLveqaaerieimagaGvn.aenvaelak 189
                  + + +l +  + ++vt+   +    dpe ++    +l + gv+ +  +G  +++        + + lae+v+  ++ri i+a +G++ a ++ +  k
  MMETSP0890-20130614|34383_1 109 DIISTLAQGLQKVPVTIKIRLLDAYDPEPTIalcHKLCDAGVALITIHGRTRDMKghlvgeANWQALAEIVKALQHRIPIIANGGIEyAYDIDRCLK 205
                  5566666777777888875554455544443224689999*****99**99776422222257899********************83445555555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.11
                  --EEEE-S-TT---- CS
    PF03932.9  21 adRvELCaalavgGl 35 
                   + +ELC++la  G+
  MMETSP0890-20130614|34383_1 239 LQYLELCKSLASEGT 253
                  5679********997 PP

>> PF02310.14  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.2e-05     0.079      63     113 ..     170     217 ..     147     225 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.2e-05
   PF02310.14  63 ssleaakelaraakrvrprvkvvvGGahvtaapeevleakpgvddvvlgeg 113
                  ++++a++e+++a++++ p  +++ GG+   ++ +++l+a   +d+v++ e+
  MMETSP0890-20130614|34383_1 170 ANWQALAEIVKALQHRIP--IIANGGIEYAYDIDRCLKA-TRADAVMVSEA 217
                  57889999****999988..999**************98.777*****998 PP

>> PF12554.3  Mitotic-spindle organizing gamma-tubulin ring associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0025       3.8      23      35 ..     138     150 ..     128     151 .. 0.89
   2 ?    1.9   0.0     0.088   1.3e+02      38      47 ..     173     182 ..     168     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0025
    PF12554.3  23 aLsicieLleaGV 35 
                  ++++c +L++aGV
  MMETSP0890-20130614|34383_1 138 TIALCHKLCDAGV 150
                  899*********9 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.088
    PF12554.3  38 eaLAevvkel 47 
                  +aLAe+vk l
  MMETSP0890-20130614|34383_1 173 QALAEIVKAL 182
                  8******976 PP

>> PF03060.10  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00011      0.17     180     216 ..     173     212 ..     138     220 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
   PF03060.10 180 llvetvkdavd..iPviAAGGiadgrgiaaaLalG.aeGV 216
                  + + ++++a++  iP+iA GGi    +i+  L    a +V
  MMETSP0890-20130614|34383_1 173 QALAEIVKALQhrIPIIANGGIEYAYDIDRCLKATrADAV 212
                  3344555555558**************9999965325555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.90
# Mc/sec: 766.83
//
Query:       MMETSP0890-20130614|34391_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-47  161.7   0.1    1.6e-26   92.8   0.0    2.2  2  PF01504.13 Phosphatidylinositol-4-phosphate 5-Kinase
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.22   11.0   0.1    1.4  1  PF11953.3  Domain of unknown function (DUF3470)


Domain annotation for each model (and alignments):
>> PF01504.13  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.8e-22   1.2e-18       9     112 ..     154     258 ..     148     293 .. 0.85
   2 !   92.8   0.0   2.3e-30   1.6e-26     120     251 ..     331     471 ..     296     472 .. 0.78

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 1.8e-22
   PF01504.13   9 lrelssggksgslfylskddrFliKtlkkselkvllkilpkYfeh.vkenpntllskiyglyrvkkqgsekkiyfvvmenlfyserkih..ekyDLKGstvgRevke 112
                   +   + g sg++f++s d+rF+ Kt ++ el +l++ +++Y ++ +++  n+ l++ +g +++ +  + +k  f+v enlfy + + +  + yD+KGs v+R++k+
  MMETSP0890-20130614|34391_1 154 TKARFNDGASGAFFIYSADSRFIAKTTTRAELIALRSRAKAYADYcCHSSGNSRLCRLLGAHTL-VLYG-RKFSFLVQENLFYATPSFEslRIYDVKGSFVNRHAKQ 258
                  5567789*************************************62577889************.7788.9***********9886665559*************85 PP

  == domain 2    score: 92.8 bits;  conditional E-value: 2.3e-30
   PF01504.13 120 avlkDldlleekellnlekekkkllleqlkkDtefLeslnimDYSLLlgih.........ekeeeeeeeekkeeeekekgiesed..........ekevlylgiIDiLqeYtlkKkleslvksllklk.gkdisvvsPkeYakRFlkfieki 251
                  +  kD+dl+   e+l+l++e+  +l+ +l+kDt+fL+++++mDYSLL+g+                   ++++ +++++   +++            + + + iID+LqeY+ +K++e+++k + +++ +  isv++P +Y++RF++ i +i
  MMETSP0890-20130614|34391_1 331 IAGKDEDLN---ETLQLDPETALRLICTLEKDTAFLARHGLMDYSLLIGVGvreydvqklG--------HNRSLNDTNQLLPQSQacrydatvaiGPSSYTIAIIDLLQEYNYSKRMERCFKVCCRCQhRLGISVIDPIRYQDRFMDRIYDI 471
                  4579*****...9*************************************53222222221........11122222222222223444445678999**************************9999789***************998766 PP

>> PF11953.3  Domain of unknown function (DUF3470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.2e-05      0.22       9      21 ..     144     156 ..     144     158 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.2e-05
    PF11953.3   9 aeLAkkWpnItek 21 
                  +e+A++W+nIt++
  MMETSP0890-20130614|34391_1 144 EEYAESWRNITKA 156
                  59*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       460  (0.0336454); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:01.27
# Mc/sec: 956.66
//
Query:       MMETSP0890-20130614|34401_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 501.83
//
Query:       MMETSP0890-20130614|34407_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1252  (0.091574); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.42s 00:00:01.10 Elapsed: 00:00:00.75
# Mc/sec: 1051.20
//
Query:       MMETSP0890-20130614|34425_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-07   28.7   0.0    8.5e-07   28.6   0.0    1.0  1  PF02475.11 Met-10+ like-protein
     0.0022   17.9   0.1     0.0026   17.6   0.0    1.1  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.045   13.2   0.0      0.054   12.9   0.0    1.1  1  PF13847.1  Methyltransferase domain
      0.058   12.6   0.0       0.06   12.6   0.0    1.0  1  PF03602.10 Conserved hypothetical protein 95
      0.078   11.9   0.0      0.079   11.9   0.0    1.0  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
       0.11   11.8   0.0       0.12   11.7   0.0    1.1  1  PF09445.5  RNA cap guanine-N2 methyltransferase
       0.13   12.7   0.0       0.15   12.5   0.0    1.1  1  PF12847.2  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF02475.11  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.3e-10   8.5e-07     104     178 ..       2      83 ..       1      84 [] 0.83

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.3e-10
                  EEEETT-----HHHHTT...TSSEEEEEES-HHHHHHH...HHHHHHT..T-TTTEEEEES-GGG-....-----EEEE--T CS
   PF02475.11 104 vvvdvfAGvgpfaipiakyskaklvlavdlnpeavkyl...keniklN..kvekvvkpileDvrevir..eqaadrvvmnlp 178
                  +v+++fAG gp +++i   ++a+ +++vd np a++ l   +++ +    + + ++++i+ Dv +++   ++++dr++ + p
  MMETSP0890-20130614|34425_1   2 RVLVLFAGCGPESLAICARTEADSIISVDANPVAIQCLhrgQQALAKTkpQAALKLTIIQDDVLHFLSscQDSFDRIIAPRP 83 
                  699************99989****************9933335565552234556789********9998999*****9876 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06    0.0026       3      76 ..       2      80 ..       1      83 [. 0.81

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-06
    PF13659.1  3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaa.......rnlaraglaervrvrqgdlrdlaellragsfdlvvt 76
                 rvl +++G+G   la +++  a+ +++v+ +p a++          ++ ++a+l  +++++q d++++ +   + sfd +++
  MMETSP0890-20130614|34425_1  2 RVLVLFAGCGPESLAICARTeADSIISVDANPVAIQCLHrgqqalaKTKPQAAL--KLTIIQDDVLHFLSSC-QDSFDRIIA 80
                 9**********88888888779***********999888777555455555666..79*******9999655.799999886 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.054      10      79 ..       8      80 ..       3      83 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
    PF13847.1 10 lGCGtGylllelaeelgpgak.vvGiDiseeaielAke....raqklgfe...nveFiqgdiee.leklleesfDlvis 79
                 +GCG  + l + a   +++a+ ++ +D ++ ai++  +    +a+  + +   ++++iq d+ + l+++ ++sfD +i+
  MMETSP0890-20130614|34425_1  8 AGCGP-ESLAICA---RTEADsIISVDANPVAIQCLHRgqqaLAK-TKPQaalKLTIIQDDVLHfLSSC-QDSFDRIIA 80
                 57777.2222223...345667************99887775333.33334779**********88865.79***9986 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     3e-05      0.06      45     118 ..       2      78 ..       1      83 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3e-05
   PF03602.10  45 rvLDlfaGsGalglEAlSR.gaksvvlvekdkkavavlkenlealklee.....evavlredaaeallklakkkeefdlv 118
                  rvL lfaG G  +l    R +a+s + v+ ++ a++ l++  +al  ++     +  ++++d+   l+ l++ + +fd +
  MMETSP0890-20130614|34425_1   2 RVLVLFAGCGPESLAICARtEADSIISVDANPVAIQCLHRGQQALAKTKpqaalKL-TIIQDD--VLHFLSSCQDSFDRI 78 
                  6899******999988888569999******************9998885433222.223333..333344455567766 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05     0.079     165     203 ..       5      42 ..       2      81 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4e-05
    PF06325.8 165 vlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeN 203
                  vl  G+G   Lai a + +a++++ vD ++vA++  ++ 
  MMETSP0890-20130614|34425_1   5 VLFAGCGPESLAICA-RTEADSIISVDANPVAIQCLHRG 42 
                  5667*********87.78***************975443 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.3e-05      0.12       4      45 ..       3      46 ..       1      83 [. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.3e-05
    PF09445.5  4 vlDlfaGaGGnviqfanv..fdkviaieinlsklklaqhNaevY 45
                 vl lfaG+G ++ ++      d++i+++ n+  +++ ++  +  
  MMETSP0890-20130614|34425_1  3 VLVLFAGCGPESLAICARteADSIISVDANPVAIQCLHRGQQAL 46
                 6779******998875543599**************99876655 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.8e-05      0.15       4      76 ..       2      80 ..       1      82 [. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.8e-05
    PF12847.2  4 rilDlGcGtGslslelarlrpgak.vvgvDpseeslelar......enaksldleeriellqgda.keelsllerfDavll 76
                 r+l l +G G  sl+++ +  +a+ +++vD+++ +++ +       +++ + + + +++++q d+ ++ +s ++ fD +++
  MMETSP0890-20130614|34425_1  2 RVLVLFAGCGPESLAICAR-TEADsIISVDANPVAIQCLHrgqqalAKT-KPQAALKLTIIQDDVlHFLSSCQDSFDRIIA 80
                 5667778888888888884.55556******999999999565444333.456668888******9999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 387.10
//
Query:       MMETSP0890-20130614|34414_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-05   22.7   0.0    0.00024   21.1   0.0    1.9  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0005   19.7   0.0     0.0027   17.4   0.0    2.2  3  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.5e-08   0.00024      10      79 ..      47     107 ..      39     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.5e-08
                  SH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEEE CS
   PF00595.19  10 gglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLt 79 
                   glG+++ g       g++v++v++ +aa ag +++GD + +v+g+ +   s+++a +++k++ ++v+Lt
  MMETSP0890-20130614|34414_1  47 LGLGLQVTG------VGLVVTQVSK-SAARAG-IQIGDYLFAVDGTVIP-RSLERASELLKNAPRPVRLT 107
                  355555555......599****997.455555.***************9.89***************998 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.9e-07    0.0027       5      60 ..      49     100 ..      40     109 .. 0.71
   2 ?   -2.9   0.0      0.84   5.7e+03      17      44 ..     205     232 ..     193     235 .. 0.72
   3 ?   -3.6   0.0       1.4   9.4e+03      33      45 ..     363     375 ..     358     382 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.9e-07
    PF13180.1   5 vsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslllkkk 60 
                   +++      g++v++V +   aa+ag+++GD + +vdg+ +  + +  s+llk  
  MMETSP0890-20130614|34414_1  49 LGLQVTGV--GLVVTQVSK--SAARAGIQIGDYLFAVDGTVIPRSLERASELLKNA 100
                  33333443..566666655..4789*****************77777777776554 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.84
    PF13180.1  17 lvvsVkessPaakaglkpGDiilkvdgk 44 
                   vv V +++    + + p Di++++dg 
  MMETSP0890-20130614|34414_1 205 AVVAVRSATGWCAQHIIPADILIALDGA 232
                  4566666666666778889999999986 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.4
    PF13180.1  33 kpGDiilkvdgkk 45 
                   +GD+i+ +++++
  MMETSP0890-20130614|34414_1 363 NKGDVIVLLENIP 375
                  6899998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.96
# Mc/sec: 1704.91
//
Query:       MMETSP0890-20130614|34454_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.7   1.1      0.091   12.2   0.7    1.8  1  PF09976.4 Uncharacterized protein conserved in bacteria (DUF2133)
       0.12   12.2   3.2       0.14   11.9   2.2    1.1  1  PF14034.1 Sporulation protein YtrH


Domain annotation for each model (and alignments):
>> PF09976.4  Uncharacterized protein conserved in bacteria (DUF2133)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   1.3e-05     0.091      10      30 ..      33      53 ..      30      55 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
    PF09976.4 10 WkryGkwiivgavlalagvaG 30
                 W+++Gk++++gav++  g+++
  MMETSP0890-20130614|34454_1 33 WDQFGKTVGIGAVAGAIGGGA 53
                 ***************999986 PP

>> PF14034.1  Sporulation protein YtrH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   2.1e-05      0.14      14      96 ..       9      92 ..       2      99 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
    PF14034.1 14 vvlGgali.gglgalltgepplktmlklaeklkiwaivaaigGtfdalrslekgllegelkelvkqlllilsallGaqvgvlli 96
                  +lGgal+ +g+  +   ++  +t  ++ +++ i a++ aigG   +l+  + + l  + + l +  + + +  +Ga +g+ + 
  MMETSP0890-20130614|34454_1  9 PMLGGALLsSGVNGFQLASQGNSTWDQFGKTVGIGAVAGAIGGGAAKLTATQLAPLVRNGSVLGQLGVNVAAGTTGAVTGTAVS 92
                 589999762689999999***************************999998888888887777777788888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 357.72
//
Query:       MMETSP0890-20130614|34446_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.0   6.0      0.004   16.4   4.2    1.9  1  PF02151.14 UvrB/uvrC motif
      0.002   16.5   1.1       0.15   10.3   0.8    2.1  2  PF04124.7  Dor1-like family
  ------ inclusion threshold ------
      0.057   12.1   0.1      0.083   11.6   0.0    1.2  1  PF03702.9  Uncharacterised protein family (UPF0075)
       0.12    9.9   0.0       0.12    9.9   0.0    1.5  2  PF05086.7  Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> PF02151.14  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.2   1.2e-06     0.004       2      35 ..     132     165 ..     131     166 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.2e-06
   PF02151.14   2 kllkeLeeemeeAaeeedFEkAAklRDqinalek 35 
                  ++l++ + +m++Aa++++FE+A  lR +++ale+
  MMETSP0890-20130614|34446_1 132 QELADTKIAMDAAAKALRFEEAITLRSKLEALEA 165
                  68999999***********************996 PP

>> PF04124.7  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.8   4.4e-05      0.15      88     160 ..     114     189 ..      96     199 .. 0.80
   2 !    3.7   0.0    0.0044        15      57     136 ..     276     358 ..     273     374 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.4e-05
    PF04124.7  88 ekrkenk..llldkheqllellelPqlmdrcirngyydealeLeayvsrLkqrist.npviqsiaaeveetvqell 160
                  +kr+ ++  ll++   +  el ++   md++ ++ +++ea +L   +  L+ r+++ +  i +i ++v  t+q l+
  MMETSP0890-20130614|34446_1 114 SKRRFSQvaLLEAADRRRQELADTKIAMDAAAKALRFEEAITLRSKLEALEARVPQdEIAIAKIKRDVISTTQVLT 189
                  445444311556677788899999999*****************************7778********99999876 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0044
    PF04124.7  57 diraqledLvlklpkLteectrfskkaeeisekrkenkllldkheqllellelPqlmdrcirngyydea...leLeayvsrLk 136
                  +++a l  L++ l+ L++ +t ++++ + + e r+++++++d +  l    ++ + + r+   + y  a    +L a+++rL 
  MMETSP0890-20130614|34446_1 276 AVDAALGVLAEGLEHLDNVATIVKEETSLLGEDRNLARKISDLVRSLAAAIDVARSIRRAYALALYPPApsiPDLDAAARRLS 358
                  57889999999999999999999999999999999999999999999999999888888888887765522257788888876 PP

>> PF03702.9  Uncharacterised protein family (UPF0075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05     0.083     256     361 ..     176     284 ..     157     287 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
                  --..HHHHHHHHHHHHHHHHHHHHHH-TT--EEEEE------HHHHHHHHHH-T.T...SEEEEGGG----GGG----HHHHHHHHHHTT-----TTT-----------E CS
    PF03702.9 256 keeaeDvqatLveltaktivdavlkaqedaerllvcGGGaknpllmkrlaellp.e...vevestdelgldadavEalaFAwlaakrvnglpgnlpsvtgakkavlLGai 361
                  k  ++Dv +t   lt k+ivd+v++  +da   l+ G   +  +l+ r  +ll  +   ++++s ++  ++a av a+a A+ a   + g   + p + +a   + LG++
  MMETSP0890-20130614|34446_1 176 K-IKRDVISTTQVLTLKAIVDTVQERSTDAGARLIGGLERRLGILVGRDRQLLLlDeklTKIASEQASSIQAWAVRAAARALYARGPLGGNSKEPPVAWSAAVDAALGVL 284
                  2.369************************99999999999999999987766531234578999999*****************99999988889999999999999976 PP

>> PF05086.7  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.6e-05      0.12     396     437 ..     150     191 ..     137     199 .. 0.90
   2 ?   -6.2   1.6       2.7   9.2e+03     887     906 ..     383     398 ..     372     403 .. 0.39

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.6e-05
    PF05086.7 396 sekvitlssklfelaskidydeikiselsddvlelskrlsfe 437
                   e  itl skl  l +++  dei i++++ dv++ ++ l++ 
  MMETSP0890-20130614|34446_1 150 FEEAITLRSKLEALEARVPQDEIAIAKIKRDVISTTQVLTLK 191
                  5789********************************999876 PP

  == domain 2    score: -6.2 bits;  conditional E-value: 2.7
    PF05086.7 887 eaeddkedededededEded 906
                  + +d ++    de+edE++ 
  MMETSP0890-20130614|34446_1 383 ADDDYIS----DEEEDEQNS 398
                  2222222....222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.40s 00:00:01.18 Elapsed: 00:00:00.72
# Mc/sec: 1394.55
//
Query:       MMETSP0890-20130614|34472_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.8   7.1      0.047   12.3   2.4    2.3  2  PF04053.9 Coatomer WD associated region


Domain annotation for each model (and alignments):
>> PF04053.9  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1    0.0028        38     140     174 ..      22      56 ..       2      84 .. 0.72
   2 ?   12.3   2.4   3.5e-06     0.047     335     385 ..     123     173 ..     120     188 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0028
    PF04053.9 140 rridvkkvknViwsddgelvalvskdtvyilsynl 174
                  +   +++v++  w+d+ +++a +++  ++i +y +
  MMETSP0890-20130614|34472_1  22 SYKLITQVDTAAWNDSSDMLAAIADGRLVIWTYPQ 56 
                  333355677778***********999999999865 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.5e-06
    PF04053.9 335 evAlelakeldseekWkkLgdaAlsqgniklaeeayqkakdfdkLllLyls 385
                  e+Al+l++  ++ ++W  L+ +A++  n++ ae a+   ++ dkL  L  +
  MMETSP0890-20130614|34472_1 123 EEALKLCRWCQETQCWAALAGMAVNASNLDAAEAAFAALNHADKLEYLQYI 173
                  6899*****************************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       549  (0.0401551); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.67
# Mc/sec: 1047.96
//
Query:       MMETSP0890-20130614|34484_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-35  120.7   0.1    5.3e-35  120.7   0.0    2.8  2  PF09736.4 Pre-mRNA-splicing factor of RES complex


Domain annotation for each model (and alignments):
>> PF09736.4  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   5.1         1   1.4e+04      17      17 ..      73      73 ..       8     180 .. 0.55
   2 !  120.7   0.0   3.8e-39   5.3e-35       2     144 ..     217     370 ..     216     371 .. 0.95

  Alignments for each domain:
  == domain 1    score: -5.2 bits;  conditional E-value: 1
    PF09736.4 17 k 17
                 +
  MMETSP0890-20130614|34484_1 73 Q 73
                 1 PP

  == domain 2    score: 120.7 bits;  conditional E-value: 3.8e-39
    PF09736.4   2 tvyRdksGkiidkeekreekekekkeekekkeeeekewgkglvqkeeaekkleeeekakkkplaryeddedldeelkekerfeDPmaeflkkkkekes...........keekkkkskYkgvapp.NRFnIkpGyrWDGvdRsnGfEkklfekkn 144
                  t+yRd +G++ d e ++++ + e  e+k+++e+   e+  g +qk+++   l+e+e +k++p+ar+++d++l+e+lk+ +  +DPma + ++k+++ +           +++k  ++ Ykg+ p  NRF I pGyrWDG+dR+nG+E kl+++++
  MMETSP0890-20130614|34484_1 217 TIYRDRKGRKLDLEVEQARIQAEL-EHKKREEQALFELRRGTKQKADEFLALQELEAIKAQPFARTAHDAQLNEHLKSIIYDDDPMADYFRSKDSHVQsshplalldktESSKSTRPMYKGPPPApNRFHIAPGYRWDGIDRGNGWELKLLAHQA 370
                  9****************9999998.88999999999*****************************************************999999888899******9999999********9988***********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       639  (0.0467379); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.83
# Mc/sec: 1117.34
//
Query:       MMETSP0890-20130614|34491_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-50  169.3   0.0    8.1e-50  169.0   0.0    1.1  1  PF00889.14 Elongation factor TS


Domain annotation for each model (and alignments):
>> PF00889.14  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   5.9e-54   8.1e-50       1     221 []      29     277 ..      29     277 .. 0.94

  Alignments for each domain:
  == domain 1    score: 169.0 bits;  conditional E-value: 5.9e-54
   PF00889.14   1 aaeGlvavkvdenk..avlvevnsETDFVAknekFqelvkkvaeaal................ekkaadveellalklee.ktvedalkeaiakigEnielrrfakleaedevvasYvHgn.....gkigvlvalkgksdea..kelakdvAmhiaAmnpqylseedvdaevlekekeiaeekakeegkpeeiiekiveGrlekflkevcLleQefv...kddkktVeqvlkeasae.ikvvkfvrfevGe 221
                  a+eGl+a  ++e++  + +vevnsETDFVA+n  Fqe+++++a++a+                 +++++++ell  + ++ ++ ++  +++ a++gE+i lrr+a +++  +vva+Y+H++     g  ++lva+++ + ++   ++ak++Amh++A++p++l+ + v++++l++e++i++++  ++gkpe+i++ki++ +l++f++e +L +Q  +   +d+k  ++ +l++a+ +  ++  f+ f+vGe
  MMETSP0890-20130614|34491_1  29 ASEGLIAFRINEDRtfGCMVEVNSETDFVARNHLFQEFAASIADSAIktritgtpdiasgailVHDTTTLDELLIETRDGeRSASEVATALSATVGERIALRRLAIVQG--SVVAGYAHNApvpamGLSAALVAISSPTVSDdlVAAAKRIAMHVVAAQPRFLQPDLVPQDLLNRERAIIHDQFVDSGKPEHILNKIISSKLNNFVSEHSLSSQVSLvdeEDSKIPISTALQKAHGKdTQLSGFAFFKVGE 277
                  89**********9999*******************************99999999999998888899999999977777789999999999****************99..9*************9999999*99998877778**********************************************************************998676678889999999988888************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.85
# Mc/sec: 814.76
//
Query:       MMETSP0890-20130614|34499_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-11   42.5   0.0    4.5e-11   42.2   0.0    1.3  1  PF00071.17 Ras family
    9.2e-09   35.7   0.0    1.5e-08   35.0   0.0    1.3  1  PF08477.8  Miro-like protein
    2.3e-05   25.0   0.0    2.8e-05   24.7   0.0    1.3  1  PF13207.1  AAA domain
    0.00015   20.9   0.0    0.00018   20.6   0.0    1.2  1  PF00025.16 ADP-ribosylation factor family
     0.0043   16.9   0.0     0.0068   16.2   0.0    1.3  1  PF13521.1  AAA domain
  ------ inclusion threshold ------
      0.028   14.6   0.0      0.035   14.3   0.0    1.5  1  PF13238.1  AAA domain
      0.068   13.0   0.0        0.1   12.4   0.0    1.3  1  PF01926.18 50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.3e-14   4.5e-11       1     100 [.       8     112 ..       8     170 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 2.3e-14
                  EEEEE-------HHHHHHHHHSS.....S-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHH CS
   PF00071.17   1 KlvlvGdsavGKtslllrfvedk.....FkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrv 100
                  K+ +vG ++ GKt++ +   +d+      ke+y +T+g+  ++ e ++++  +++e+wDT G  +++s  +++++da g +lvy+ ++++  ++   w++ + + 
  MMETSP0890-20130614|34499_1   8 KVNVVGPKCSGKTTIANFLASDEvpafsLKEHYSETVGCRILECERNFEDGLINIELWDTSGSTDYESCWPAVMKDAAGTILVYNPENEAHVSESGAWYDFFVKN 112
                  7889***********99999996344224799*******************************************************999999999998876655 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   7.8e-12   1.5e-08       1     103 [.       8     110 ..       8     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 7.8e-12
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel....lelwdlggreelkkehelllkkadaillvydltdeesleevsellawlaelr 103
                  kv vvG k++GK+++ + l+++e p  +l+e   ++t++  +le++ + e     +elwd++g+ + ++  + ++k+a++ +lvy   ++e+ ++vse  aw++ + 
  MMETSP0890-20130614|34499_1   8 KVNVVGPKCSGKTTIANFLASDEVPAFSLKE-HYSETVGCRILECERNFEDglinIELWDTSGSTDYESCWPAVMKDAAGTILVY---NPENEAHVSESGAWYDFFV 110
                  899**********************555554.44567777888888887777899**************99999***********...6666679999999988665 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.4e-08   2.8e-05       2      43 ..       9      50 ..       8     124 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.4e-08
                 E--B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-B-- CS
    PF13207.1  2 iaitGppGsGKsTlakeLaerlglpvlsldd.llreeglkeld 43
                 + ++Gp +sGK+T+a+ La    +p +sl++ +  + g ++l+
  MMETSP0890-20130614|34499_1  9 VNVVGPKCSGKTTIANFLASD-EVPAFSLKEhYSETVGCRILE 50
                 679*****************7.799999999554444444444 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.3e-08   0.00018      15     122 ..       7     124 ..       1     160 [. 0.84

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 9.3e-08
                  EEEEEE--TT---HHHHHHHHHS-EEE......E-S--S-EEEEEEE....TTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEE CS
   PF00025.16  15 lrilllGLDnaGKtTilkklkleelvt......tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvla 122
                  l++ ++G  ++GKtTi + l ++e+         + T+g  + e e       +++++wD  G +   ++W   +++  + i v    ++  ++e+ +  + +++++ l++ + +v+a
  MMETSP0890-20130614|34499_1   7 LKVNVVGPKCSGKTTIANFLASDEVPAfslkehYSETVGCRILECERnfedGLINIELWDTSGSTDYESCWPAVMKDAAGTILVYNPENEAHVSESGAWYDFFVKNNGLRDEQCIVFA 124
                  688899*****************9976555555789999999887765544679*******************************************************998888887 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.5e-06    0.0068       1      29 [.       8      38 ..       8      58 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.5e-06
    PF13521.1  1 kivitGgpstGKTtlleaLaargypvv..pE 29
                 k+ ++G+ ++GKTt+++ La+ ++p +  +E
  MMETSP0890-20130614|34499_1  8 KVNVVGPKCSGKTTIANFLASDEVPAFslKE 38
                 6889****************99888664455 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.8e-05     0.035       3      23 ..      11      41 ..       9     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-05
    PF13238.1  3 itGtpGvGKtTlakeLaerl..........g 23
                 ++G+ ++GKtT+a+ La+ +          +
  MMETSP0890-20130614|34499_1 11 VVGPKCSGKTTIANFLASDEvpafslkehyS 41
                 7899************988655555544440 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.2e-05       0.1       2      84 ..       9      90 ..       8     124 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.2e-05
                 EEEE--TT---HHHHHHHHCST..CTEETS-TT-SSSESE....EEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEE CS
   PF01926.18  2 vaivGrpNvGKStLinaLtgek..aakvsdypgtTrdite....nevkkek..iilvDtPGiiegasedkeiegikkylekv.eradvlllv 84
                 v +vG   +GK+t+ n L  ++  a   +++  +T    +    ++++++   i+l+Dt G             +++ + +v ++a + +lv
  MMETSP0890-20130614|34499_1  9 VNVVGPKCSGKTTIANFLASDEvpAFSLKEHYSETVGCRIleceRNFEDGLinIELWDTSGST----------DYESCWPAVmKDAAGTILV 90
                 779***************9766443333344444444422233334455545578******32..........2333444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 722.90
//
Query:       MMETSP0890-20130614|34492_1  [L=1181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.3e-106  356.3   0.1   1.4e-105  353.7   0.0    2.1  2  PF00063.16 Myosin head (motor domain)


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.7   0.0    1e-109  1.4e-105     261     689 .]       1     452 [.       1     452 [. 0.87
   2 ?   -3.7   2.5      0.14   1.9e+03     504     586 ..     620     707 ..     616     740 .. 0.62

  Alignments for each domain:
  == domain 1    score: 353.7 bits;  conditional E-value: 1e-109
                  HHHHHH-----EEEECTTCCC....EESTHHHHHHHHHHHTS-HHHHHHHHHSEEEEESSEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS...............--SEEE-EEE-------SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGCCS--.SCCHHHHHHHHS......S----HHHHHHHHTSTTS-HHHHHHHHHHHHTTTSTTEE-TTTSTTT-SSEEEEEESSCEEEEE-TTHHHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH........................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTSEEEEEEEE-S-TT--TT---HHHHHHHHHH---HHHHHHHH----EEEEHHHHHHHHGGGSCTCS.CSTT--SSHHHHHHHHHHHT....T--GGGEEB---EEEES CS
   PF00063.16 261 lAaiLhlGnikfkedqkeeqa....vvedkeelekiaellgvdveelekallkrriktgrevvtkalnkeqaedardaLakaiYsrLfdwivekiNealsake..............dkaaaviGvlDiaGFeifeknsfeqlciNyanEkLqqffnehifkleqeeyeregieweeidygldnqavidLiek......kpaGilsllDeecrlpkatdesflekllktfeskhlkfskkrlskaraessftvkHyAgeVeYsaegflekNkdplsedlvellkssssslvaelfkeeelae....dfeeeeaaaesa.klgsakgksgkkkkfetvgsqfkeslgelmktLrstnphfvrCikPneekkakkfdsklvleqlkclGvlegirirraGfpsriafdefaerykllaekelvklselvgdekkacekilkel....eldkeeyrvGktkvFfr 689
                  +Aa++hlG+++f  d+ ++ +    +   ++el+++a+l  +  e l +al++r ++t+ e + + l ++ a++ardaLaka+Y rLfdw+ve iN+ +++ +              +   a iGvlDi+GFe+f  nsfeqlciNy+nE+Lqq+fn+ +fkleqeey re+i+w++i++  dnq+++d+ie          G+l++lD+ec+lp+++d+++++++ k+   ++   + ++  k+  +  f+++HyAg V Y ++gflekNkd l ++  +l+ + +  l++e+    + a+    + + + + ++ + k+g ++ +++k     tvgsqfk++l++lm+++ +t+ph++rC+kPn+++ ++ f + +v eql++ Gvle +r++r+Gfp r++++efa  yk + +           d+k +c++++k++        +e+++GktkvF+r
  MMETSP0890-20130614|34492_1   1 VAALIHLGQVQFDFDAGDDGGgsilTPIASKELQIAADLAALPYEPLLAALTTRLVQTRAEQYLVRLVPDDAANARDALAKALYGRLFDWLVESINQGIAKGSytgapadaiptnkkRRGTANIGVLDIFGFECFATNSFEQLCINYTNETLQQQFNRYVFKLEQEEYAREQITWSFIEF-PDNQDCLDVIEGgrkqmpPDGGLLTMLDDECKLPRGSDANYAARVAKSLGTTQERITISK--KQAVDGIFQLRHYAGPVPYLTKGFLEKNKDELPRAAEQLFINGE-GLLTEICAAHTRAAeraaAAQAQATGGKITpKTGGNTTAKAKVTATITVGSQFKAQLTSLMQAVAKTKPHYIRCLKPNDQNVPNAFWRARVAEQLRYGGVLEAVRVARSGFPVRLKHAEFAAYYKAVGPLLP------GFDAKAQCDALVKSAsescGFAVHEAQLGKTKVFLR 452
                  79**********99997776688988888999***********************************************************************************99889999*********************************************************.8**********88754433469*************************9955444433332..578999*********************************99876.45555555544433344333333333343314444444444555569***************************************************************************9999998773......468999999999998776666789**********97 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.14
                  HHHHH--S-HHHHHHHHT-SSHHHHHHCHSHCH..........................CSTTBTCHHC-CHHHHHHHHHHHHHHHHCTS CS
   PF00063.16 504 lekNkdplsedlvellkssssslvaelfkeeelae....dfeeeeaaaesa..klgsa.kgksgkkkkfetvgsqfkeslgelmktLrst 586
                  l+++kd+++e+++ l +++ s   ++    +e +e    +    ea+++++  +l+++ ++++ +  +   +  + ++++++l+++L++ 
  MMETSP0890-20130614|34492_1 620 LQQEKDAMKEEILRLRQQAASAAAQREHATAEAREaeltQ--LREAMEREKlaALAQQrDAERIQRDELAALKENSQTEIAKLRSALERE 707
                  78899*************9997777777666665555542..222222222002222202222233333444555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1474  (0.107812); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.94u 0.38s 00:00:02.31 Elapsed: 00:00:01.39
# Mc/sec: 2036.04
//
Query:       MMETSP0890-20130614|34520_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.6   0.4     0.0042   16.9   0.1    1.9  2  PF03992.11 Antibiotic biosynthesis monooxygenase
     0.0019   18.3   0.1     0.0033   17.5   0.1    1.4  1  PF08938.5  Domain of unknown function (DUF1916)


Domain annotation for each model (and alignments):
>> PF03992.11  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.4   2.8e+03      47      66 ..      65      84 ..      22      88 .. 0.76
   2 !   16.9   0.1   6.2e-07    0.0042      10      70 ..     321     380 ..     313     388 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.4
                 SCEEEEEEEEESSHHHHHHH CS
   PF03992.11 47 dpdevvvieeWeseaafrah 66
                 ++d + ++ +We  + +  +
  MMETSP0890-20130614|34520_1 65 NEDAYENMMRWERSEELASW 84
                 55566677777766666666 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 6.2e-07
                  EEGGHHHHHHHHHHHHHHHHHTT-----EEEEEECTTSCEEEEEEEEESSHHHHHHHHTSH CS
   PF03992.11  10 vkpgaeeafeeafaeaaesllaeepGflgyellrstddpdevvvieeWeseaafrahlksp 70 
                  v  g  ++fe+  +e+ +++ ++  Gflg++++r+++  +++v + ++++   +r++  s 
  MMETSP0890-20130614|34520_1 321 VAWGCTREFEAWAQEMSDAM-RNSGGFLGADYFRESKSNNVFVTLFRFQTVSQLRDWIESQ 380
                  66677899**********99.7***********************************9886 PP

>> PF08938.5  Domain of unknown function (DUF1916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   4.8e-07    0.0033      50     102 ..     197     249 ..     174     289 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.8e-07
    PF08938.5  50 slsaedveEeeedeyedeeekessesvsnpqLdeldqaklssclDelrevlgd 102
                     + ++eEe++de ++e+ k + +  s + +++ ++ k  sc+D++ ++l d
  MMETSP0890-20130614|34520_1 197 RRYSMSLEEENDDELDNEHIKDDGKLESGHVVQDKSKKKQASCFDDVISILED 249
                  445779************9999****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:00.79
# Mc/sec: 1240.65
//
Query:       MMETSP0890-20130614|34529_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   16.6   0.1       0.13   11.5   0.0    2.6  2  PF00036.27 EF hand
  ------ inclusion threshold ------
       0.28   11.0   2.7        1.9    8.4   0.0    2.9  3  PF13405.1  EF-hand domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.9e-05      0.13       2      21 ..      45      64 ..      44      69 .. 0.89
   2 ?    2.3   0.0     0.017   1.2e+02      17      28 ..     110     121 ..     108     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHCTTTSSEBEHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeE 21
                 +k +F+++D D +G++ ++E
  MMETSP0890-20130614|34529_1 45 CKSVFEKVDIDSSGTVGVSE 64
                 7899************9998 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.017
                  BEHHHHHHHHHH CS
   PF00036.27  17 IsfeEfkealkk 28 
                  ++++Ef+++l+ 
  MMETSP0890-20130614|34529_1 110 VDLQEFQTLLTL 121
                  89******9985 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00028       1.9       3      25 ..      46      68 ..      44      74 .. 0.87
   2 ?    1.5   0.0     0.047   3.2e+02      16      27 ..     109     120 ..      90     125 .. 0.81
   3 ?   -2.8   0.6       1.1   7.5e+03      11      21 ..     214     224 ..     211     224 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00028
                 H---GCC-------B---HHHHH CS
    PF13405.1  3 reaFklfDkdgdGkidaeELrda 25
                 +++F++ D d +G++  +E+  a
  MMETSP0890-20130614|34529_1 46 KSVFEKVDIDSSGTVGVSECYVA 68
                 689****************9655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.047
                  -B---HHHHHHH CS
    PF13405.1  16 kidaeELrdaLr 27 
                  ++d++E++ +L+
  MMETSP0890-20130614|34529_1 109 EVDLQEFQTLLT 120
                  89******9997 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.1
                  ------B---H CS
    PF13405.1  11 kdgdGkidaeE 21 
                  +d d+ i+++E
  MMETSP0890-20130614|34529_1 214 DDDDNNINKKE 224
                  57788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       562  (0.0411059); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.86
# Mc/sec: 626.95
//
Query:       MMETSP0890-20130614|34534_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 486.22
//
Query:       MMETSP0890-20130614|34540_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-21   75.8   0.2    2.3e-21   75.0   0.1    1.5  1  PF02319.15 E2F/DP family winged-helix DNA-binding domain
  ------ inclusion threshold ------
      0.047   13.2   0.2       0.11   12.1   0.0    1.7  2  PF01978.14 Sugar-specific transcriptional regulator TrmB
       0.07   13.1   0.0       0.12   12.4   0.0    1.4  1  PF06953.6  Arsenical resistance operon trans-acting repressor ArsD


Domain annotation for each model (and alignments):
>> PF02319.15  E2F/DP family winged-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   5.1e-25   2.3e-21       1      70 [.      15      79 ..      15      80 .. 0.97

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 5.1e-25
   PF02319.15  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70
                 r+++sL +lt+kf++++e+s++gi++++++a++L   +v  k+RR+YD++NVLe+++l+++++kn+++w 
  MMETSP0890-20130614|34540_1 15 RSDSSLAQLTKKFVNMIETSPNGIINVKDAADKL---SV--KKRRLYDVTNVLEGIGLLKRHSKNRFEWT 79
                 6899******************************...99..9***************************5 PP

>> PF01978.14  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.11      22      58 ..      38      74 ..      25      83 .. 0.88
   2 ?   -3.4   0.0       1.6   7.3e+03      25      36 ..     182     193 ..     180     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.4e-05
   PF01978.14 22 patadeiaeelgvprskvyevLrsLekkGlverekgr 58
                   ++++ a++l v + + y+v + Le  Gl +r  ++
  MMETSP0890-20130614|34540_1 38 IINVKDAADKLSVKKRRLYDVTNVLEGIGLLKRHSKN 74
                 5789999*************************98776 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.6
   PF01978.14  25 adeiaeelgvpr 36 
                   +ei+ e++v+r
  MMETSP0890-20130614|34540_1 182 ENEISGEIKVSR 193
                  679999999987 PP

>> PF06953.6  Arsenical resistance operon trans-acting repressor ArsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05      0.12      26      68 ..     105     149 ..      98     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.6e-05
    PF06953.6  26 lvkfaadlewlkk..kgveveRfnLaqepqaFvenaavkalleks 68 
                  l ++ ++ e l++  +++  +RfnL ++p+ F++++ v+++ +++
  MMETSP0890-20130614|34540_1 105 LTSLLQESEHLEQsiRDAVTTRFNLVEDPMLFLTQEDVQSVYKNA 149
                  555555556665422456679*****************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      557  (0.0407402); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.46s 00:00:00.97 Elapsed: 00:00:00.84
# Mc/sec: 727.47
//
Query:       MMETSP0890-20130614|34545_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-26   92.8   0.0    1.8e-26   92.1   0.0    1.3  1  PF00994.19 Probable molybdopterin binding domain
    6.5e-23   80.2   0.8    6.5e-23   80.2   0.5    1.7  2  PF06844.6  Protein of unknown function (DUF1244)
  ------ inclusion threshold ------
       0.38   10.1   3.5       0.67    9.3   2.5    1.4  1  PF04939.7  Ribosome biogenesis regulatory protein (RRS1)


Domain annotation for each model (and alignments):
>> PF00994.19  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   3.9e-30   1.8e-26       1     141 [.     145     288 ..     145     291 .. 0.89

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 3.9e-30
                  EEEEE-CHEE-T-EEB-HHHHHHHHHHC.T--EEEEEEEE-SSHHHHHHHHHHHHHCSSEEEEE------TT-HHHHHHHHH-SS.....HHCHHHHHCCH-----C-GGGGG---B....TTB.EEE----HHHHHHHHHHCHHHH CS
   PF00994.19   1 avitvGdellsgkieDtngpllaellke.lgvevskyevvpDdpeeikealaaaleeadvvittGGtGptedDvtpeavaklgekelegfeelfrgvslkpgkpvgvapgailsrav....gkt.vigLPGspkaakealeeillpl 141
                  +++tv+d+  sgk++D++gp + e++++ +    +++++vpD+ e+i+ +l++++e++++++ttGGtG++++Dvtpea+ +++ k+++g   ++++ +l+  k   +  +  lsrav    +++ +++LPG p a+ + l +++ p+
  MMETSP0890-20130614|34545_1 145 GILTVSDRASSGKYKDESGPAVEEQVRKfIPNAFIRTRIVPDESEKIATTLISWSESCNLILTTGGTGFSPRDVTPEATLSILHKQAPGLLDIVHKDALHDTKASHLDSL--LSRAVagvrNQSlILNLPGRPAAVHRNLPLLF-PT 288
                  69*************************95556899999****************9999******************************************9885555555..788778886556577*********99998887.65 PP

>> PF06844.6  Protein of unknown function (DUF1244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.5   1.4e-26   6.5e-23       2      67 ..      24      89 ..      23      90 .. 0.97
   2 ?   -3.2   0.3       1.5     7e+03      46      54 ..     101     109 ..      91     114 .. 0.47

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 1.4e-26
                 -HHHHHHH----HHHHHHHHHHHHHH------HHHHHHHH----HHHHCHT------HHHHHHHS- CS
    PF06844.6  2 qNidLmnlagFCRNCLskWykeaaeekgveldkdeareivygmpyeeWkakyqteataeqlaafek 67
                  Nid+m  +g CRNC++kWy +   ++g e+++++a e+vyg +y +Wk+kyq++at eql++fe+
  MMETSP0890-20130614|34545_1 24 ANIDIMGASGMCRNCVAKWYYAGVLASGKEISYEKACEYVYGESYGDWKKKYQKKATSEQLQEFEA 89
                 6***************************************************************97 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.5
                  HHHHCHT-- CS
    PF06844.6  46 yeeWkakyq 54 
                  ++ W ++++
  MMETSP0890-20130614|34545_1 101 IQTWANQFK 109
                  344444444 PP

>> PF04939.7  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.5   0.00015      0.67      87     124 ..      49      86 ..      41     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00015
    PF04939.7  87 AkkKGikkrkksklvyDeetgewvprwGykrankdkek 124
                  A  K i+ +k    vy e+ g+w++++++k   ++ ++
  MMETSP0890-20130614|34545_1  49 ASGKEISYEKACEYVYGESYGDWKKKYQKKATSEQLQE 86 
                  778999**********************8887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       545  (0.0398625); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.49s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 980.91
//
Query:       MMETSP0890-20130614|34560_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-48  163.7   0.4    6.1e-48  163.4   0.3    1.0  1  PF00291.20 Pyridoxal-phosphate dependent enzyme
    6.1e-05   22.4   0.3     0.0061   15.9   0.2    2.9  2  PF00107.21 Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> PF00291.20  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.3   8.9e-52   6.1e-48      46     305 ..       5     247 ..       2     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 163.4 bits;  conditional E-value: 8.9e-52
                  HHHHCHHHC.....---EEEEE--S----HHHHHHHH---EEEEEEETTS-CHHHHHHHC---EEEE-TT-SSSGGCHCCHHHH..HHHHHHHHHHS..--TT..-CHHHHHHHHT-HHCCCHHHH.----..-B--------HHHHHHCCCCCTH.TT---EEEEEGGG-TT-...............S..----T.TT-GGGHHHHSS---EEE.EE-HHHHHHHHHHHHHH-----------HHHHHHHHHH-..HHTG----EEEEE CS
   PF00291.20  46 nallralak.....ggkgvveassGNhGaavAlaaallglkativvpsgappekialiralGaevilvvssvegdyddaaelaekalelvrplkgei..ldqs..ndpdviaGygtiglEileqlg.kpdpdavvvpvGgGgliaGiakglkelil.pkirvigvepegsdalarslragervqldkkttiaglscgtpldgelafelidelvdevvtvsdeealeavrllarregivvepsgaaalaallraekegslaagkgkrvvvvl 305
                  +++++a+++     g +++ve +sGN+G+a+A++aa+ g+k+++ +p++++ e++ l++a+Ga+ +l++ + +   + a++ ae+ ++++      +  ++q+  n+ +   +  t+g+Ei+eq + k+d   +v++vG+Gg+i+G+a++lk   l p+ +vi+vep++s+ l     +g++    ++++i+g++ g+ ++g+    l de+    +++s+ ea+e++r+lar+eg++++ s++aa+ a+   + +     +  k vv+v+
  MMETSP0890-20130614|34560_1   5 SMIAEAEKRgeirpGETTLVEPTSGNTGIALAMVAAAKGYKIILTMPESMSMERRVLLKAFGADLVLTPAAKG--MSGAVRKAEDLVADLG----DKgfMLQQfdNPDNPAIHRTTTGPEIWEQTNkKIDI--LVAGVGTGGTITGCAQYLKP--LkPNLQVIAVEPQESAVLS----GGAP----GPHKIQGIGAGF-IPGNADTSLFDEV----IKISSTEAIEMARRLAREEGLLCGISSGAAVLAAESVALR-----DPSKMVVTVI 247
                  6888888889999999**************************************************9999755..5666666665444433....334545555999******************99***9..********************..779************8885....5553....55799******9.99***99999998....5*********************************664433.....3557888887 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2     9e-07    0.0061       3      81 ..      32     149 ..      31     165 .. 0.84
   2 ?    1.9   0.0     0.019   1.3e+02      35      89 ..     194     247 ..     189     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9e-07
                  --HHHHHHHHH--EEEEE...ESSHHHHHHHHH----EEEETTTS-.....................................HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-- CS
   PF00107.21   3 GlaavqlAkalGarviav...dsseeklelakelGadhvinskded.....................................fvkaireltggkgvdvviecvgagatfeqalkllap 81 
                  G+a++++A+a G ++i +   + s e++ l+k++Gad v+++                                          + +i+e t++  +d+ +  vg+g t++ + + l+p
  MMETSP0890-20130614|34560_1  32 GIALAMVAAAKGYKIILTmpeSMSMERRVLLKAFGADLVLTPAAKGmsgavrkaedlvadlgdkgfmlqqfdnpdnpaihrttTGPEIWEQTNK-KIDILVAGVGTGGTITGCAQYLKP 149
                  8999999*****9999995555799*****************9999888888888888888888888888888888888888888888888887.888888888888888888777776 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.019
                  --EEEETTTS-HHHHHHHHTTT--BSEEEEET-.CTHHHHHHHCB-----EEEC- CS
   PF00107.21  35 adhvinskdedfvkaireltggkgvdvviecvgagatfeqalkllapgGrvvvvg 89 
                   d+vi  + +++ ++ r+l +++g    i + + +    ++++l +p  +vv+v 
  MMETSP0890-20130614|34560_1 194 FDEVIKISSTEAIEMARRLAREEGLLCGISSGA-AVLAAESVALRDPSKMVVTVI 247
                  588999999999999999999999998888877.999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.76
# Mc/sec: 832.42
//
Query:       MMETSP0890-20130614|34566_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   47.6   0.0    1.1e-10   41.0   0.0    2.8  2  PF14234.1 Domain of unknown function (DUF4336)


Domain annotation for each model (and alignments):
>> PF14234.1  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   8.2e-15   1.1e-10      13     159 ..      55     190 ..      39     204 .. 0.77
   2 ?    0.1   0.0     0.024   3.3e+02     244     267 ..     228     250 ..     209     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 8.2e-15
    PF14234.1  13 illvavpiRmtvvklksGgLlvyaPlapTeelvelleeleeeggeVkhivlptaalEHKvfvgplarkfpkAevwvapg.qwsfPlnlplellgipktktleedsdavpwadeievkvLeplslglgk....faevaffhkasktllvtDav 159
                  ++   v  +  +v+lksGgL+++aP+   +   e++++l    g+V+ iv p a  EH  f+++  +++p+A    ap  q  fP     +   ip+           + +de++++ +++ ++ l +    f+ev+f+hk+sk l vtD  
  MMETSP0890-20130614|34566_1  55 LQRTDVACKAAIVRLKSGGLWIHAPVKLDAGTKEAVDSL----GPVQFIVSPNA--EHVSFAQEWIEAYPDALPLCAPYlQERFPYIKWQQS--IPPV--------PSDLEDEFDIAWIDAERVPLISnkpfFSEVVFCHKPSKCLFVTDLW 190
                  55567888999***************9888888999999....8******9975..****************98888863566775322222..2222........34455666666666665555444467******************86 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.024
    PF14234.1 244 reevlawveevakewdferivpaH 267
                  + + ++ +e+v +  df+ +vp+H
  MMETSP0890-20130614|34566_1 228 QPSHTDIIEKVLD-FDFDCLVPCH 250
                  4455677899999.99******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.56
# Mc/sec: 1135.12
//
Query:       MMETSP0890-20130614|34570_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.1   0.0     0.0025   17.3   0.0    1.4  1  PF08239.6 Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> PF08239.6  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-07    0.0025       3      35 ..     115     147 ..     113     154 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-07
    PF08239.6   3 LNVRsgpgtsskvigqlpkGekvtvlgeengWy 35 
                  L  R+ p+t+  vig l+ Ge v + g++++W 
  MMETSP0890-20130614|34570_1 115 LKARAIPETYGAVIGELKWGEAVLIYGQSGDWL 147
                  667999**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1068  (0.0781159); expected 273.4 (0.02)
Passed bias filter:                      701  (0.0512727); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.60
# Mc/sec: 1002.48
//
Query:       MMETSP0890-20130614|34568_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-11   41.7   8.7    1.6e-06   27.7   1.3    3.3  2  PF00397.21 WW domain
    0.00031   20.7   0.3     0.0031   17.5   0.0    2.6  2  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   1.3   2.4e-10   1.6e-06       5      31 .]     232     257 ..     229     257 .. 0.93
   2 !   16.5   0.5   7.2e-07    0.0049       3      31 .]     265     293 ..     256     293 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.4e-10
                  EEE.E.E----EEEEETTT--EESS-- CS
   PF00397.21   5 WeersddddGrvYYyNheTgetqWekP 31 
                  W  ++dd+ ++vYY++ e+g+tqW+ P
  MMETSP0890-20130614|34568_1 232 WISCTDDN-NHVYYVHRESGRTQWNLP 257
                  99999999.***************998 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 7.2e-07
                  -SEEE.E.E-.---EEEEETTT--EESS-- CS
   PF00397.21   3 pgWeersddd.dGrvYYyNheTgetqWekP 31 
                   gW +r d   +G++YY+ ++Tge +W  P
  MMETSP0890-20130614|34568_1 265 SGWAARLD-KaSGHTYYFFASTGEVTWVLP 293
                  58**9996.559***************988 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.6e-07    0.0031      13     103 ..       8     101 ..       3     102 .. 0.69
   2 ?   -0.5   0.0      0.19   1.3e+03      59      59 ..     217     217 ..     151     288 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.6e-07
                  SSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT..........CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24  13 llktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv..........esyllsaeseeerkrWvqalknll 103
                  +  +w+ ryfvL+++++ +fk+  +  +k+  +    n+++++ +s         +++ f   + +            ++ l a s  ++++W++al+ ++
  MMETSP0890-20130614|34568_1   8 KIAQWRTRYFVLHGDVVAWFKPVGTDWSKSQLHGTLTNYIRITADSVV-------RPHRFDTCCLKLekclapdgrcGKLRLRAASIHQARTWIKALEHAI 101
                  6689*******************9944444444444444455555554.......3333333333333334488889999999999999999999999876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.19
                  E CS
   PF00169.24  59 s 59 
                  +
  MMETSP0890-20130614|34568_1 217 A 217
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.65
# Mc/sec: 1087.58
//
Query:       MMETSP0890-20130614|34580_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   28.7   0.1    1.1e-05   25.3   0.1    2.1  1  PF01734.17 Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   8.3e-10   1.1e-05       3     180 ..       5     147 ..       3     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 8.3e-10
   PF01734.17   3 lsGGGtrGafslgalka.LkkelgdrfdiisGtSaGaiiaallalgrdpaalvedlrelllnkffdrdllirelaanlaarlsgllgpgglfdaealrellrkvlgdltlkrlsarlgklpllkslataaqavpaittataasastantanslyteddeddvpladavraSsafPglf.....p 180
                  ++GGG  ++fslg++ + L    ++  +   + S G ++a++l l  dp +lv++    l+++   r+                    g   +  +lr++l+ +l d++ +rls+rl  +                        s  ++  ++   ++    +l+d + aS+++Pg+      +
  MMETSP0890-20130614|34580_1   5 FDGGGWAAVFSLGVVDYlLTNYVLPETTRAYAISSGNLAALCLMLQLDPNELVQERFPSLIDAMRARP------------------VDGLCGQLQPLRQFLESILPDDAHQRLSNRLVVI-----------------------VSNWPFLGFRGISTFVSRLELIDSIIASCSLPGFVafpfcN 147
                  9****************6489*************************9999988776666666666666..................4666678899************************.......................46777777777778888****************98555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.78
# Mc/sec: 725.05
//
Query:       MMETSP0890-20130614|34583_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 838.72
//
Query:       MMETSP0890-20130614|34589_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       229  (0.0167496); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 228.40
//
Query:       MMETSP0890-20130614|34581_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-34  116.6   0.0    2.5e-33  114.8   0.0    1.8  2  PF00270.24 DEAD/DEAH box helicase
    2.3e-13   49.6   0.0    1.4e-12   47.2   0.0    2.2  2  PF00271.26 Helicase conserved C-terminal domain
    3.4e-05   23.6   0.0    7.1e-05   22.6   0.0    1.6  2  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.03   13.9   0.1       0.03   13.9   0.1    2.7  3  PF13245.1  Part of AAA domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   7.2e-37   2.5e-33       1     167 [.      63     225 ..      63     228 .. 0.92
   2 ?   -1.9   0.0       0.5   1.7e+03      51      92 ..     311     348 ..     286     362 .. 0.66

  Alignments for each domain:
  == domain 1    score: 114.8 bits;  conditional E-value: 7.2e-37
                  -HHHHHHHHHHH.SS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH.T..-SEEEEEHHHHHHHHHHCCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-T CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 167
                  t iQ+ +++++  ++g+++++a+TGsGK+lafl+pv+ ++ e+   +t+ ++l++aPtr La+q ++ +++++   ++rv+ ++gg +l+ +ql  + ++++++vvgTpgrl + v ++ + +l  +++ ++DEad+  +  +  +++ +l+ l+    +++++ SAT +
  MMETSP0890-20130614|34581_1  63 THIQKVTVQALReQDGNLMMSAATGSGKSLAFLLPVMAAIDEN---DTRPQVLVIAPTRDLAAQLARVATEYAPD-GIRVATLFGGANLK-RQLDTFrKRRPHLVVGTPGRLAEAVFEHGIlKLAGLKFCIIDEADEANKSTYIVDVDALLSSLSSS--CRLVLSSATCS 225
                  689*99999999779*************************995...4899***********************76.9***********99.5555555999***************9977779999***************************9666..89*******86 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.5
                  EEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24  51 alivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardq 92 
                  al+ + + + a++ +++l++ ++   l +ll++g+ + a  +
  MMETSP0890-20130614|34581_1 311 ALVFVDSPQVARDLASSLTNKCN---LPTLLLTGQESAA-SR 348
                  55555555566666666655554...5788888888755.33 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   1.4e+03       7      38 ..     135     163 ..     133     178 .. 0.66
   2 !   47.2   0.0     4e-16   1.4e-12       4      77 ..     330     413 ..     327     414 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.42
                  ---EEEE-TTS-HHHHHHHHHHHHTTTSSEEE CS
   PF00271.26   7 gikvailhgelpqnereeileqfnagkskvlv 38 
                  gi+va l g+ + + +   l+ f++ + + +v
  MMETSP0890-20130614|34581_1 135 GIRVATLFGGANLKRQ---LDTFRKRRPHLVV 163
                  7778888886666555...5555555555555 PP

  == domain 2    score: 47.2 bits;  conditional E-value: 4e-16
                  HH----EEEE-TTS-HHHHHHHHHHHHTTTS.........SEEEESTTC-S---STTESEEEESSS.BSSHHHHHHH------T CS
   PF00271.26   4 ekkgikvailhgelpqnereeileqfnagks.........kvlvatnvaerGidlpdvnvVinfdl.prsvtsyiQriGRtgRa 77 
                  +k++++++ l+g+ ++ +re+ l+  ++             vlvat va+rG+d p++++Vin+   p s   y++r GRt+R 
  MMETSP0890-20130614|34581_1 330 NKCNLPTLLLTGQESAASREAALRTLRRLAAiplvngedpVVLVATEVAARGLDAPAISHVINYLSlPSSAGHYAHRGGRTARG 413
                  788999999***9999999999999999888999999999***********************9665999999**********6 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.1e-08   7.1e-05      17      97 ..      71     155 ..      16     164 .. 0.81
   2 ?   -3.9   0.0       2.7   9.1e+03     150     162 ..     187     199 ..     180     223 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.1e-08
   PF04851.10  17 esiekedekkrglivmaTGtGKTlvaas.liarlar.....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgee 97 
                  +++++  +  +++  +aTG+GK+l  +  ++a++ +     ++l+++p+++l  q+ +  ++++ + i +++++ + + k++l+++ 
  MMETSP0890-20130614|34581_1  71 QALRE--QDGNLMMSAATGSGKSLAFLLpVMAAIDEndtrpQVLVIAPTRDLAAQLARVATEYAPDGIRVATLFGGANLKRQLDTFR 155
                  33333..47899***********98773234444445557****************9999999999999988888877777776665 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.7
   PF04851.10 150 iiiDEaHrlsakk 162
                   iiDEa  +++++
  MMETSP0890-20130614|34581_1 187 CIIDEADEANKST 199
                  5888887777666 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   8.8e-06      0.03       6      63 ..      72     133 ..      69     156 .. 0.77
   2 ?   -2.8   0.2       1.4   4.8e+03      39      62 ..     278     301 ..     267     313 .. 0.52
   3 ?   -1.0   0.2      0.39   1.3e+03      41      57 ..     333     348 ..     319     383 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.8e-06
    PF13245.1   6 ala..gnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl....l 63 
                  al+    +l++  +  G+GK+ + +  + a+++  e + + +vl++apt+  a++l+++      
  MMETSP0890-20130614|34581_1  72 ALReqDGNLMM-SAATGSGKSLAFLLPVMAAID--ENDtRPQVLVIAPTRDLAAQLARVAteyaP 133
                  55555578888.*********777777777784..4555668**************877655542 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.4
    PF13245.1  39 ekpgrsvllvaptgraakrlserl 62 
                  e + +  l+  + ++a + l+++l
  MMETSP0890-20130614|34581_1 278 ERVAHARLITRSDREAFEALRKVL 301
                  333333344455555555666666 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.39
    PF13245.1  41 p.grsvllvaptgraakr 57 
                  + +   ll++++  aa r
  MMETSP0890-20130614|34581_1 333 NlP--TLLLTGQESAASR 348
                  445..6666666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:00.74
# Mc/sec: 1470.20
//
Query:       MMETSP0890-20130614|34582_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-10   40.6   0.0    9.1e-10   38.8   0.0    2.0  1  PF00856.23 SET domain
    1.8e-08   33.8   4.3    4.3e-08   32.6   3.0    1.7  1  PF07496.10 CW-type Zinc Finger


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.3e-13   9.1e-10       1     163 [.     202     321 ..     202     322 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.3e-13
                  ----EESS-B----EEEEECCCEEECCCCHH...................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEES..TTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaek....addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfv..trgprvalrAtrdIpkGeEltidY 163
                  G  vfA+++ip+ +f+c y ge   ++   +    a++ g + +++ ++ a+ea k                                                 +  +++ + v+ + +  ++a+ l HSC +N++ +   v  +++ +val A r I+ GeEl +dY
  MMETSP0890-20130614|34582_1 202 GTAVFALRPIPAHTFICDYLGETYAPARWLEklacAKMLGQNHKEEFHNIAMEAPKT------------------------------------------------DPGGYALYFVDAGGHRANFASSLSHSCQGNVSSSLF-VkdDGRLAVALHANRQIQTGEELAYDY 321
                  5679*************************9988887667777777777777777777................................................9**************************999999985.5589*********************** PP

>> PF07496.10  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   3.0   6.2e-12   4.3e-08       2      47 ..     778     825 ..     777     828 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 6.2e-12
                  EEEE-TTT--EEEE-.TTT----TTSS.---GGGSS..-SSS-STTS-- CS
   PF07496.10   2 ywVQCdkClKWRklp.eeveeirsklpekWfCsmnp..dkaynsCsape 47 
                  +wV Cd+C KWR +p ++++e  ++++  ++C +++    ++ +C++pe
  MMETSP0890-20130614|34582_1 778 HWVACDQCGKWRAVPwHHASE-YDEADASFICTDQKqwGVEDANCDEPE 825
                  8**************754444.577888******99866788******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.99
# Mc/sec: 2258.38
//
Query:       MMETSP0890-20130614|34577_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-07   30.3   0.0    4.9e-07   29.9   0.0    1.2  1  PF12680.2 SnoaL-like domain
    0.00088   19.0   0.0     0.0011   18.8   0.0    1.2  1  PF10184.4 Uncharacterized conserved protein (DUF2358)


Domain annotation for each model (and alignments):
>> PF12680.2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   7.2e-11   4.9e-07      16      79 ..      21      89 ..      14     120 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 7.2e-11
                 HHHTEEEEEEEECTS--E---HHHHHHHTTHHHCEECEEEEEEEE....ESSTTEEEEEEEEE-E..ESB CS
    PF12680.2 16 laallapdvvwedpfgelrGrealraffrallaafpdlrfevedv....iadgdrvvvrwtvtgt..ipp 79
                 + +l+a+d+ +edp  ++ G++++++ +r+l++ +++ r+e++      ++dg +v+v w+++g+  i+p
  MMETSP0890-20130614|34577_1 21 IPELFAEDFKFEDPDVKISGIQEYAQGVRRLFD-QETSRAEIVSCeqkeTDDGAKVIVTWRLSGRvnIGP 89
                 569***********99****************7.99999999999*9*9**************9977333 PP

>> PF10184.4  Uncharacterized conserved protein (DUF2358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-07    0.0011      17      88 ..      18      87 ..       5     124 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.5e-07
    PF10184.4 17 keldysiYsedveFedpltkfrtlerYkknlallrflgrlffadvklellkitqteed...eiktrWtlsglprl 88
                  ++  ++++ed +Fedp  k+ ++++Y +   + r+  +   ++ + e+++ +q+e+d   ++ ++W+lsg +++
  MMETSP0890-20130614|34577_1 18 GNVIPELFAEDFKFEDPDVKISGIQEYAQG--VRRLFDQ---ETSRAEIVSCEQKETDdgaKVIVTWRLSGRVNI 87
                 55667899**********************..4444444...78999*****9999888999*******987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 611.07
//
Query:       MMETSP0890-20130614|34608_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-56  190.3   0.0    1.9e-55  187.7   0.0    1.9  2  PF10637.4 Oxoglutarate and iron-dependent oxygenase degradation C-term
      5e-18   65.3   0.0    3.9e-17   62.4   0.0    2.3  2  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF10637.4  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.041   2.8e+02     150     192 ..      14      56 ..       3     131 .. 0.73
   2 !  187.7   0.0   2.8e-59   1.9e-55       2     259 ..     155     410 ..     154     416 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.041
                  EE--B---EEEEEEE-EEEE---------.-----EEEEE---- CS
    PF10637.4 150 YtLatdeeeeearLdvtlgltptkgWesg.evGGyelymagdde 192
                    L +d+  +  ++   l+lt + +W+ + + G  ely ++++ 
  MMETSP0890-20130614|34608_1  14 HLLCHDDVIGSRAVSYILYLTDE-DWNYEkDGGSIELYQTDKNG 56 
                  56777777778888888999966.77765245556777644443 PP

  == domain 2    score: 187.7 bits;  conditional E-value: 2.8e-59
                  HHHHHHTTB-HHHHS----HHHHHHHHHHSEEEESS-B-HHHHHHHHHHH..HHHHHS----SGGG--TT-EE-B-TTTEE-EEE----HHHHHHHHS...-----HHHHHHHHHHHSHHHHHHHHHHHSEEE-E.EEEEEEEE-----EE--B---EEEEEEE-EEEE---..........-----------EEEEE--------------..------EEEEE---EEEEEEEEE-TTEEEEE----TT-SS-EEEEEEEEEEEE--- CS
    PF10637.4   2 dlkfLlkylnpeYLtpetleelqeqfeeeseieLedfLkeeiaeklkesleseekkdkelptsskeielewkvagPphkqrYlyldekeeasqetlektpleelaealllelaellkseafrkwlslltglalts.eqiearRfrpGldYtLatdeeeeearLdvtlgltpt..........kgWesgevGGyelymagddeededaavyksa.ddeddevLltlapswNslslvlRdegvlkFvKYvsasakgsRWdvsgeyevkalee 259
                  d++ L ++++peY ++ ++++l+ +f e+s ++L +fL+++++++lke +++++  + ++p+++ +i++ew++ gPphkqr+l+l+ +          +p ++    +  +l + +ks afr++++ ltg+++++ ++  +rRfrpGldY +a +++ e arLd+t+++             + W++gevGG+ +  +++d++de+++vy+   d+++   Ll+l+p++N+l++vlRd+g l+FvK++s++a+gsR d     e++ +++
  MMETSP0890-20130614|34608_1 155 DIAELCQFIKPEYTKATNAAKLRATFLESSCMVLGEFLQPHFVQALKENIDDTDLGNGHIPKDNAQISTEWHLMGPPHKQRFLVLNDNV---------HPSRN----AWAQLCHYFKSVAFRNFIASLTGVRIQAnARATVRRFRPGLDYSVAYGQN-EPARLDLTYCILGGgkerenddsfDLWKDGEVGGFSALYDTEDDNDENPDVYHNDdDQNNATALLSLPPENNALAVVLRDPGYLRFVKFLSRKAPGSRIDLDIVAEIHPEDM 410
                  7889****************************************************99***************************9987.........22223....366789******************77651679*****************9.99********98777899*****99****************************9733445578***********************************99888888777665 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   5.7e-21   3.9e-17       2     100 .]       5     105 ..       4     105 .. 0.88
   2 ?   -0.1   0.0      0.18   1.2e+03      15      36 ..     351     368 ..     323     400 .. 0.63

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 5.7e-21
    PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpew..eeeGGelelypsdrsegvakevedeevv..pkpgrlvlFks..drslHrvtpv.gaqgrrlaitgwft 100
                  + n y +gg+l +H D    +sr+++++lyl+d++w  e++GG +ely+ d   ++ + + +  v+  p +++l++F+    +s+H+v++v  ++++rl+i gwf+
  MMETSP0890-20130614|34608_1   5 SANAYAEGGHLLCHDDVI--GSRAVSYILYLTDEDWnyEKDGGSIELYQTD---KNGEPLSQPVVRinPTRNSLLMFQVvpGKSFHAVQEVyCQNAPRLSISGWFH 105
                  6799*************6..****************************865...44444443333355************************999*********97 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.18
    PF13640.1  15 HvDnsesssrrltlllylndpe 36 
                  H D    ++  +t+ll l  pe
  MMETSP0890-20130614|34608_1 351 HNDD---DQNNATALLSLP-PE 368
                  4444...555555555555.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.45s 00:00:01.28 Elapsed: 00:00:00.86
# Mc/sec: 1309.64
//
Query:       MMETSP0890-20130614|34616_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-09   35.4   0.0    6.4e-09   35.3   0.0    1.0  1  PF00534.15 Glycosyl transferases group 1
     0.0084   16.1   0.0     0.0092   16.0   0.0    1.0  1  PF13692.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   9.4e-13   6.4e-09      49     116 ..       5      76 ..       2      78 .] 0.90

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 9.4e-13
                  EEEE----B-HHHHHHHHHH--..-EEE-----HHH...HHHHHTT.ECEEEE--SS.B---HHHHHHHH-- CS
   PF00534.15  49 klvivGdgeeekelkklaeele..lsdnvifvgevpredleelyrn.adifvlpsrs.EgfGivllEAmaag 116
                  ++v++Gdg+ ++  ++la +l+  l++ ++f+g++p+e +++ +rn  +++v++ +  E f++  lEA+a g
  MMETSP0890-20130614|34616_1   5 QFVVIGDGPLRQASEQLAIDLGlrLNHDIHFIGWLPPETVRSAIRNlTHVVVHTNILeETFCMCNLEALAEG 76 
                  79*********99999998765226899****************************************9966 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06    0.0092      36      96 ..       5      77 ..       2      78 .] 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.3e-06
    PF13692.1 36 elviiGkgpd.....elarl.......lepnveflgfv..eelaellasa.dvglaplrfgeglplKlleylaaGl 96
                 ++v+iG gp      +   l       l+  ++f g++  e + +++++  +v++++    e++++  le+la G+
  MMETSP0890-20130614|34616_1  5 QFVVIGDGPLrqaseQ---LaidlglrLNHDIHFIGWLppETVRSAIRNLtHVVVHTNILEETFCMCNLEALAEGR 77
                 7999999874333332...22334565677********73369******6489999888889**********9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 296.69
//
Query:       MMETSP0890-20130614|34619_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-69  234.4   0.0    2.6e-68  230.7   0.0    2.0  1  PF01425.16 Amidase


Domain annotation for each model (and alignments):
>> PF01425.16  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.7   0.0   1.9e-72   2.6e-68       6     434 ..      66     520 ..      61     521 .. 0.80

  Alignments for each domain:
  == domain 1    score: 230.7 bits;  conditional E-value: 1.9e-72
   PF01425.16   6 flaraeavneklnafvtvlfeealaqaealdkarargkkkgpLaGvPislKDniavkglpttaGskalenyvatkDatvverLkaaGavilGktnmpefamgsttensafgptrNPwnksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAafcgvvGlKPtygrvsragvv......pvsasldtvGplarsVedaalllrvisgkdpkdptsavip.psedlaeelkkslkglriGvlredg..............lvsldpevqeavekaaaalealghevvevelpelkealslyyaiavaeassnls................llellarirdealgdevkrrleegaialsaedseeyylkaqkvrr.llrrefaklfeelDvlllPtvptpaprlgelekli....dsytvlynlldftantvpvnlaglpalslpvglsedglPvGlqivgkpgsdetl 434
                  + ar + v+ +++a+ ++ +ee+la   + ++++  ++    L+G+Pi++K +++ +g p   G+    +++a+k + +v++++ +Ga ilG tn+pefa+g  t+n+++ +t NP++  rt+GGSSGG AAa+A++++ la+G+D GGS R+PAafcg+vG++P+ gr+ r++        ++   ++  Gp+arsV d+al+++++s++  +d   +  +  +ed a+  + +   l + ++ + g                       +  ++++ a++alg  v +     ++ + +    i+ ++  + +s                 + + ++ + ++l++e+k  +  +a +  ++ +   ++ka   ++  +  ++ ++f + D+l++P +   +++ +    ++    + +tv + ++++++ + +v+++ +pa+ lp+g+ +dglPvG+q+++kpg+d+ l
  MMETSP0890-20130614|34619_1  66 CRARRDIVDAEIHAVPIFWYEECLANILENSQKK--EHISQYLHGLPILIKGSMQFQGAPIFDGFYK-NGKIAQKSSAIVQQMQLLGASILGMTNVPEFATGGHTFNNVYPTTVNPYDIRRTVGGSSGGAAAALASRQCWLALGSDLGGSLRVPAAFCGIVGMRPSPGRICRDPPLsnggktKRFDLHSIDGPMARSVLDLALAFDCLSQPILSDGLAPGWEgLDEDNAQIIGPQGHTLQLPLPGKTGppcplytwaslawsG-------SQKRQACRVAVSALGSSVRSDI---MELITDAARLISLEDSPQFVSepwplaiaescfntlrANSFAQKYKHSDLLNELKPEIVWNATKATQGID---VQKAWHNNKhIIAPAVYEFFLTTDILATPCTIDLPFHKDIRYPTEaiygNGTTVYEDYMQWLKPCYIVSVTECPAIVLPCGTLDDGLPVGIQLIAKPGDDAIL 520
                  5567777888888888888888877666666555..5999************************975.6889**************************************************************************************************999988888888999999**********************9998887776557667888888888888888888888899*****55555441.......4444444444444444444422...2222223334444444444445555555555555555677777778888899999988888877777643...444444444389*****************8888887765444333669777888889*******************************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:01.00
# Mc/sec: 1492.93
//
Query:       MMETSP0890-20130614|34627_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-35  119.9   4.5    9.8e-35  119.7   3.1    1.0  1  PF00368.13 Hydroxymethylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> PF00368.13  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   3.1   7.2e-39   9.8e-35     165     356 ..       2     193 ..       1     194 [] 0.94

  Alignments for each domain:
  == domain 1    score: 119.7 bits;  conditional E-value: 7.2e-39
   PF00368.13 165 mGmNmvskatekalelieeef...peaevlalsgnlctdKKpsainliegrGksvvaeavipaevveevlkttvealve.lneaknlvgsalagsigfnahaaNivaAvfiAtGqDvaqvvessnaitlmeaakeg...............edlyisvtlPslevGtvGGgtkl.ptqraclellgvkgagknakkLAeivaaavLageLsl 356
                  mG+N+v++++e+a++ +++     +++  l++++nl+t+             + + a+a+++   ++ +     +++v+ + +a++++++++ ++ ++n++++N+++++++A+GqD+++++++++a+ + +++ ++               ++l +s+++P l+vG vGG++k+ p++ra +++lg++    +a +LA+i++aa+La++L++
  MMETSP0890-20130614|34627_1   2 MGANAVNTVAEAAAPTVARLAgldEDQIGLRILSNLATH-------------RLARAQAIFTPTELAAAGD--EANIVDaIVRAYHFAAVDPFRACTNNKGVMNAISSIALACGQDWRAIEAGAHAYCAWKKNAQNtpyipmttwskdpnsGNLLGSIEIP-LTVGLVGGAVKIqPAARANINILGIS----SAAELAKIMVAAGLAQNLAA 193
                  9****************8755434458889*********.............***********99976654..7778877***********************************************9999998889************************.**************************....9*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.66
# Mc/sec: 704.38
//
Query:       MMETSP0890-20130614|34623_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-59  201.4   0.0      2e-59  200.7   0.0    1.3  1  PF00069.20 Protein kinase domain
    4.7e-48  160.8   0.0    2.3e-23   81.7   0.0    2.6  2  PF00027.24 Cyclic nucleotide-binding domain
    7.4e-29  100.5   0.0    1.3e-28   99.7   0.0    1.3  1  PF07714.12 Protein tyrosine kinase
    0.00063   19.4   0.0      0.087   12.4   0.0    2.6  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.29   10.7   0.0    1.6  1  PF11608.3  Limkain b1


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   0.0   7.4e-63     2e-59       3     254 ..     260     529 ..     258     540 .. 0.89

  Alignments for each domain:
  == domain 1    score: 200.7 bits;  conditional E-value: 7.4e-63
                  EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH............HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE......CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
   PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk............kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl......eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                    ++lG G+fG+V  +++ kt+k +A+K+++k +   + +++++  E ++l  +sHpn+++l+++++++d++y+++e+v+gg+l +++               g+++e + +++   ++ + e++H ++i++rDLKpeN+Ll+ +g++k++DFG+akk+       + + k +t++gt+eY+ PE+++ +k+++k+vD W+lG++++ell+g++pf ++++ +  ++i + +k   ++++ + ++ ++ +k+l++ l++ ++  Rl + ++
  MMETSP0890-20130614|34623_1 260 RFKTLGTGTFGRVSLVVHVKTKKVYALKQMQKAQVVTSHQERNIMnEKNLLLLCSHPNVLELVATYQDNDSIYMLMELVQGGELWSYIYektketaklrkhGFGCFDEPTSRFYSGCVIAAFEHIHGHSIAYRDLKPENLLLSADGYVKVIDFGFAKKVpytdakGQFHDKSYTICGTPEYLCPEIIQ-SKGHDKAVDYWALGCLIFELLSGRTPFADDRQPEIFRKILNAKKYLDPHSSLWPKNFPAHAKELVQHLCKIEAPYRLGMSQA 529
                  5689****************************9887777766666599999999***********************************99999998875445677*******************************************************99988888899****************.******************************6666666666666666666667777778******************995543 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   3.7e-25     1e-21       2      87 ..       8      92 ..       7      95 .. 0.96
   2 !   81.7   0.0   8.3e-27   2.3e-23       3      86 ..     132     215 ..     130     218 .. 0.97

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 3.7e-25
                 EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHHC CS
   PF00027.24  2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrelle 87
                 +++++ + i+ eGd++d ++++++G+vk +++++ ++ ++l elgpGd+fGe+al+++epr+a+v al ++++++i+r+df +l+ 
  MMETSP0890-20130614|34623_1  8 IKYDAQQRIITEGDQGDDFFLVKEGQVKCTHQNQTQE-QVLLELGPGDYFGEMALMLDEPRHANVDALKKTTCYKISRADFVRLFG 92
                 6899*****************************9997.68******************************************9996 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 8.3e-27
                  EE----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHH CS
   PF00027.24   3 sfkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrell 86 
                   fk g +++k+Gdp++++yii +G+++v++++++ +++i+++l+  dffGe al+++epr+a+v+a+t+ e+lv++r++f++ l
  MMETSP0890-20130614|34623_1 132 LFKTGKYVIKQGDPGSRFYIINEGTAQVITENKNNEQTIIRTLTNQDFFGERALINEEPRAASVIAKTHLECLVLDRDAFKAYL 215
                  69******************************************************************************9876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   4.7e-32   1.3e-28       3     227 ..     260     495 ..     258     528 .. 0.81

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 4.7e-32
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT..........GTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEES.TTTSCE..EESTT-E.ECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS--- CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk..........ekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardi.ekddyy..kkkeeak.lpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekp 227
                    k+lG G+fG+V   ++     k++   a+K++++    ++++++++++e +++  ++hpn+++l++ + +++++++++e+v+gG+L +++ +k              ++  +   ++  +  + e+++ +++  rdL   N Ll+ +  vk+ DfG a+++ ++d +   ++k+ +     +++ pE++++k   ++ D W+ G+l++E+++ g++p+++  + e+++++ + k+   p
  MMETSP0890-20130614|34623_1 260 RFKTLGTGTFGRVSLVVHV----KTKKVYALKQMQKaqVVTSHQERNIMNEKNLLLLCSHPNVLELVATYQDNDSIYMLMELVQGGELWSYIYEKtketaklrkhGFGCFDEPTSRFYSGCVIAAFEHIHGHSIAYRDLKPENLLLSADGYVKVIDFGFAKKVpYTDAKGqfHDKSYTIcGTPEYLCPEIIQSKGHDKAVDYWALGCLIFELLS-GRTPFADDRQPEIFRKILNAKKYLDP 495
                  5689**********99999....677778999995522556777999***********************************************988887776654555666666777888999***************************************633333322333333335679******************************.99******999999888554444333 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011        31      11      84 ..     273     345 ..     268     359 .. 0.68
   2 !   12.4   0.0   3.2e-05     0.087     167     196 ..     388     416 ..     379     421 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.011
                  EEEEEEEETT.TEEEEEESSCCHHHHHHHHHHHH.....HHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
   PF01636.18  11 nrtyrvttgagryvlrrarparaaeelrrevall.....rlLakagipvPevlagdtdddvlgllfalleyvpgevler 84 
                  + +++v+t++  y+l+   +a      ++e  ++      lL  +   v e++a+ +d+d +++   l+e v+g  l+ 
  MMETSP0890-20130614|34623_1 273 SLVVHVKTKK-VYALKQMQKA-QVVTSHQERNIMneknlLLLCSH-PNVLELVATYQDNDSIYM---LMELVQGGELWS 345
                  6788999977.9999998888.55556666665533322333444.3799****9899999987...555555555555 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.2e-05
                  EEB-SS-SGGGEEEETTTTEEEE---TT-B CS
   PF01636.18 167 vllHgDlhpgNllvdpddgrvgviDfedag 196
                  ++  +Dl+p Nll+   dg v viDf++a 
  MMETSP0890-20130614|34623_1 388 SIAYRDLKPENLLLS-ADGYVKVIDFGFAK 416
                  56789**********.777778*****997 PP

>> PF11608.3  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.29      31      81 ..     146     196 ..     142     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
    PF11608.3  31 GGkvlsvsgksavlrfanqeaaeRalkRleneDvfGnritvsespkerefn 81 
                  G +   + +++a +   n++  +   + l n D fG+r +++e+p+ + + 
  MMETSP0890-20130614|34623_1 146 GSRFYIINEGTAQVITENKNNEQTIIRTLTNQDFFGERALINEEPRAASVI 196
                  67778899999***9******************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.36s 00:00:01.29 Elapsed: 00:00:00.73
# Mc/sec: 1986.02
//
Query:       MMETSP0890-20130614|34638_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-09   37.0   0.0    6.2e-08   32.8   0.0    2.1  2  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.011   1.5e+02       1      53 [.      10      74 ..      10     150 .. 0.70
   2 !   32.8   0.0   4.5e-12   6.2e-08     116     163 ..     184     238 ..     178     239 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.011
                 ----EESS-B----EEE...EECCCEEECCCCHH........................----TTC CS
                 xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23  1 GrGvfAtedipkGefvc...eyvgelltddeaek.........addagtilqakkelaadeakks 53
                 GrGv++t   ++G++v+    + +   +++             ++d+  i+  k ++a++e++++
  MMETSP0890-20130614|34638_1 10 GRGVITTSFRKRGDVVLanmQPLAIAYRSHKTCLpwtlppeilQYDQARIDLQKSQDARKEFEEK 74
                 89999999999999888866443333333332225777777774455555555555555555444 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 4.5e-12
                  EE-TCGGGTEE-SS.SEEEEEEES.......TTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 116 llgpvarflNHSCdpNltvqfvfv.......trgprvalrAtrdIpkGeEltidY 163
                  +l+ +a+flNH+ +p+l v f++        ++ p + lrA rdI ++eElti+Y
  MMETSP0890-20130614|34638_1 184 ALYGFASFLNHNREPSLLVDFHHRapnhdliQDVPLLSLRAARDIHPNEELTISY 238
                  6789***********9999999999****************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       420  (0.0307197); expected 273.4 (0.02)
Passed bias filter:                      381  (0.0278672); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.76
# Mc/sec: 810.35
//
Query:       MMETSP0890-20130614|34640_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       843  (0.0616589); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 595.67
//
Query:       MMETSP0890-20130614|34671_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-15   56.0   0.2    1.6e-14   53.9   0.0    1.9  2  PF00696.23 Amino acid kinase family
  ------ inclusion threshold ------
      0.064   11.4   0.4      0.079   11.1   0.3    1.2  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00696.23  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   2.3e-18   1.6e-14     157     234 ..       4      82 ..       1      88 [. 0.90
   2 ?   -0.2   0.1     0.076   5.2e+02      93     102 ..     161     170 ..     108     222 .. 0.53

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 2.3e-18
                  -S--HHHHHHHHCT-SEEEEE-S----BSS-SSS-TTSSB-SEEECCCHHHHHH....S...---CCCHHHHHCCHHHST CS
   PF00696.23 157 ssDtlaallAaalgAdklilltdVdGVytadPkkvpdakllpeisvdeaeelsi..asgdvtgGmkvkhpaalkaaregg 234
                  ++D laal+A+++gA+ l+ll+dVdG+y+++P++ p ak+l+ ++ ++ +  +   +s+ ++gGm  k+ aa++a++  +
  MMETSP0890-20130614|34671_1   4 DNDGLAALVAHLIGAQVLVLLSDVDGLYDRPPDE-PEAKILDWVTPNDRKHFLFgqKSTSGRGGMQAKVAAAFRALELAN 82 
                  89***************************99988.*************98866699********************8843 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.076
                  HHHCCCHHCE CS
   PF00696.23  93 agerlsaplv 102
                  ++e+++ +++
  MMETSP0890-20130614|34671_1 161 SLEQNQNNIL 170
                  3333333222 PP

>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   1.2e-05     0.079      14      78 ..     112     176 ..     102     219 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.2e-05
                  TTTEEEEEEEE---HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH CS
   PF00171.17  14 PatgeviakvaaataedvdaavaaAkaafkawaklpaeeRaeilrkaadlleerrdelaelevle 78 
                   +++ + +++++ t+ d+ a ++  + a ++ ++l+ ++R++il+ +a+ le++++++ ++   +
  MMETSP0890-20130614|34671_1 112 TSDQMKSTHIQQNTELDLLAQLKRTRIAARNLEALNSTQRTNILKSIATSLEQNQNNILKANEED 176
                  5677788999999999****************************************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       920  (0.0672908); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:01.09
# Mc/sec: 518.84
//
Query:       MMETSP0890-20130614|34685_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      223  (0.0163107); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.98
# Mc/sec: 139.38
//
Query:       MMETSP0890-20130614|34692_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-45  154.0   0.0    4.6e-45  153.6   0.0    1.1  1  PF02230.11 Phospholipase/Carboxylesterase
    8.2e-11   41.7   0.0    1.7e-10   40.6   0.0    1.6  1  PF12695.2  Alpha/beta hydrolase family
    2.9e-07   29.8   0.0    3.9e-07   29.4   0.0    1.1  1  PF01738.13 Dienelactone hydrolase family
    4.2e-07   29.3   0.2    2.6e-06   26.6   0.0    2.0  2  PF00326.16 Prolyl oligopeptidase family
    8.7e-06   25.2   0.0    1.3e-05   24.6   0.0    1.3  1  PF03959.8  Serine hydrolase (FSH1)
    1.1e-05   25.3   0.5    7.3e-05   22.6   0.3    2.2  1  PF12697.2  Alpha/beta hydrolase family
     0.0019   17.4   0.0     0.0028   16.9   0.0    1.2  1  PF11187.3  Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.022   14.3   0.0      0.032   13.8   0.0    1.2  1  PF01083.17 Cutinase
       0.12   11.8   0.0       0.16   11.3   0.0    1.3  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0     3e-48   4.6e-45       9     215 ..      33     235 ..      31     236 .. 0.93

  Alignments for each domain:
  == domain 1    score: 153.6 bits;  conditional E-value: 3e-48
   PF02230.11   9 pakpaqavvIflHGlGdsghllaeaakl..eaallntkfifphgpeepvtlnggmrmpaWfdlkelspnkkedeagikksaekleelidaelkkgipssriiigGFSqGaalalylaltspk..plggivafsgalplnqkleqsatkvakipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHsilseelqdikkflakl 215
                  p+k+a+ ++I+lHGlGd+++++ +a+        +++ +i+p + ++p t+n+gmrmp W+d+ +l++++ +d +gi++s + ++ +++        ss ii+gGFSqG+a+al +al+++    l gi++ s++lp +q+  +  ++ +++ +l++Hg+ D ++  + +k ++  l++l+ + +l+ y+g+gHs +++e+ ++++f++++
  MMETSP0890-20130614|34692_1  33 PDKKAEITIIWLHGLGDTADGWIDAFLDggFSLPERCDIILPTAETRPITINNGMRMPGWYDILGLAESSPVDTNGISQSVQRISSIVRS------ISSPIILGGFSQGGAIALTAALSQEPfpSLIGIIGASCYLPNAQNYDK--ASDPNLRFLLCHGDSDDIIIPQAAKLTHTKLQSLGLQAQLNWYKGMGHSACKDEFDAMSAFIQAR 235
                  899*******************99987632445579****************************************************97......4789*******************999999*****************95..444479********************************************************975 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.1e-13   1.7e-10      36     142 .]     106     219 ..      40     219 .. 0.70

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 1.1e-13
    PF12695.2  36 ghgasegaaaakrvlaadlldleriilvGhSlGGgvalelagrddrvkglvllap...f.pd...gedlakltlpvllihGtrDgvvppeeaeklakalp...gdaelvviegasHf 142
                  ++g s+++++ ++++ ++    ++iil+G+S+GG++al++a +++++ +l+ + +   + p+    ++ ++ +l +ll hG++D+++ p++a+ ++ +l+    +a+l + +g++H+
  MMETSP0890-20130614|34692_1 106 TNGISQSVQRISSIV-RSI--SSPIILGGFSQGGAIALTAALSQEPFPSLIGIIGascYlPNaqnYDKASDPNLRFLLCHGDSDDIIIPQAAKLTHTKLQslgLQAQLNWYKGMGHS 219
                  455667777888888.755..47******************98755555554433244564432258999*****************8888888777777666899**********6 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.6e-10   3.9e-07      82     192 ..     109     222 ..     100     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.6e-10
   PF01738.13  82 lkaainylkslpevstkkvgvvGfClGGalalllAaenpevdaavafYG...altlekpleeaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpgagHaFaa 192
                  ++++++ + s  +  ++ + + Gf  GGa+al  A  ++ +   ++  G    l++ ++ ++a + + + l  +g+ D++i  +aa+ ++ +l++ + +++l++Y+g gH+  +
  MMETSP0890-20130614|34692_1 109 ISQSVQRISSIVRSISSPIILGGFSQGGAIALTAALSQEPFPSLIGIIGascYLPNAQNYDKASDPNLRFLLCHGDSDDIIIPQAAKLTHTKLQSLGLQAQLNWYKGMGHSACK 222
                  5567777777777778899999*************99977999999999888889999****************************************************9555 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   2.6e+02      66      87 ..     127     147 ..     122     161 .. 0.78
   2 !   26.6   0.0   1.7e-09   2.6e-06     134     196 ..     164     227 ..     157     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.17
                  EEE--------HHHHHHHH-GG CS
   PF00326.16  66 laitGgSyGGylvgaalnqrpd 87 
                  +++ G S GG  +++a+  + +
  MMETSP0890-20130614|34692_1 127 IILGGFSQGGAIALTAALSQ-E 147
                  678899*******9999833.3 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.7e-09
                  HH-GGG---.----EEEEEETT-SSS-THHHHHHHHHHH..--SEEEEEES---------HHHH CS
   PF00326.16 134 pyspadnvk.aypplllihGeeDdrvppaealklvaaLqkagknvlllifpdegHgigkprakv 196
                  +++++d+    + ++ll+hG+ Dd + p+ a    ++Lq+ g +++l ++++ gH++ k+++ +
  MMETSP0890-20130614|34692_1 164 NAQNYDKASdPNLRFLLCHGDSDDIIIPQAAKLTHTKLQSLGLQAQLNWYKGMGHSACKDEFDA 227
                  55566665558899*****************************************777666544 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.7e-09   1.3e-05      80     183 ..     103     196 ..      57     219 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 8.7e-09
    PF03959.8  80 sneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkeakhpklkfailvsGfkleepkyeeyyeedkiqtpsLhvlGelDtvvdeerseaL 183
                  + +  g+++s++ +  ++++      + GFSqG+a+a + a  +e+       p+l  +i +s++ ++ ++y+++   d+ +++ L  +G++D ++ ++ + +L
  MMETSP0890-20130614|34692_1 103 PVDTNGISQSVQRISSIVRSISSPIILGGFSQGGAIALTAALSQEP------FPSLIGIIGASCYLPNAQNYDKAS--DP-NLRFLLCHGDSDDIIIPQAA-KL 196
                  6788999*************99999999********9887755553......589999*********999998844..44.89***********9986544.44 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.3   4.8e-08   7.3e-05      30     107 ..      93     178 ..      41     236 .. 0.62

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.8e-08
                  E-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEE.EE------STT............- CS
    PF12697.2  30 pDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglv.lidppgplpas............a 107
                  +D  G  +S++    d + + + ++ +  +++++   p++l G S+Gga+al aa ++ + + +l+  i++ ++lp+              
  MMETSP0890-20130614|34692_1  93 YDILGLAESSPV---DTNGISQSVQRISSIVRSIS-SPIILGGFSQGGAIALTAALSQ-EPFPSLIgIIGASCYLPNAqnydkasdpnlrF 178
                  355555556564...5788999************9.99**************999874.56777776777777666666555554444440 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06    0.0028      70     106 ..     111     147 ..      89     152 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-06
    PF11187.3  70 sAakYlnkileesegkiylgGHSKGGnlAvyaaanae 106
                  + ++ + +i++ ++ +i+lgG+S+GG +A+ aa+  e
  MMETSP0890-20130614|34692_1 111 QSVQRISSIVRSISSPIILGGFSQGGAIALTAALSQE 147
                  5667788999**********************99866 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.032      61     100 ..     106     144 ..      98     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
                  HHHHHHHHHHHHHHHHH-TTSEEEE---B---HHHHHHHH CS
   PF01083.17  61 aaGiadaarlvnsaaskCPntkivlgGYSqGaavmdnaia 100
                   +Gi +  ++++s++ +  ++ i+lgG+SqG+a++  a+ 
  MMETSP0890-20130614|34692_1 106 TNGISQSVQRISSIVRSI-SSPIILGGFSQGGAIALTAAL 144
                  567777777777777665.789***********9866543 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.16      11      83 ..      52     144 ..      41     161 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
                  HHHHHHHHHTECCCTTCGGS............TT-EEE---HHHHH.........HHHHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHH CS
   PF01764.20  11 eewltdldislvevdellek............eggkvhkgfleayk.........sareqvlkelkrllekypdykivvtGHSLGGalAlLaaa 83 
                  + w+  +  + ++++e ++             ++g  + g++++++         +  +q  + + +++++ +   i++ G+S GGa+Al aa+
  MMETSP0890-20130614|34692_1  52 DGWIDAFLDGGFSLPERCDIilptaetrpitiNNGMRMPGWYDILGlaesspvdtNGISQSVQRISSIVRSIS-SPIILGGFSQGGAIALTAAL 144
                  5566666666666666665566666677777788888999999999999888555444444444555555554.88*************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:01.13
# Mc/sec: 512.90
//
Query:       MMETSP0890-20130614|34690_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   53.5   0.0    3.2e-14   53.1   0.0    1.1  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
     0.0097   15.5   0.1       0.02   14.4   0.1    1.5  1  PF01192.17 RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   4.7e-18   3.2e-14       2      98 ..      61     181 ..      60     204 .. 0.68

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 4.7e-18
                  EEEEE---BHCCCTTBGGGTCC.........--B-----HHHHHHHTHHHHTTHCESE........EEEESSHHHHHHHHH.HCCCCE.....EEEEE.GGGSHHHH-.....---TTCHHHHHH CS
   PF00300.17   2 lylvRHGeselnkegrlqgwsd.........vpLtekGreqarelgkkLkradlqida........vytSplkRaiqTaei.lleeld.....ipiiqeprLrerdfg.....eweglpkaevke 98 
                  +y++RHGes++n     q++ d         + Lt++G  qa++l  +++   ++ d+        +y+Spl+Ra+qTa + l+++         ++  p+ re+ +      +++g+++ e+++
  MMETSP0890-20130614|34690_1  61 VYFLRHGESQWNV---AQKQRDpvgmfgkfdHALTARGVLQAENLRSRIRL-TPRLDRlefdgataIYCSPLTRAVQTALVaLAAHPAlrrggPGLKLVPDCRELTYPvggfdSLKGENRYELAN 181
                  8***********8...66666655555555357*************99553.33333333333555************99977774445566644556677777777323443444555555544 PP

>> PF01192.17  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     3e-06      0.02       7      41 ..     173     206 ..     171     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3e-06
                  ---HHHHHHHHHHHHHHHH-----TT---SSSSSS CS
   PF01192.17   7 ylnrYelariiakRAlqlsygapplvdeenetkpv 41 
                    nrYela ++ +RA+    g   l ++e+ ++ +
  MMETSP0890-20130614|34690_1 173 GENRYELANKVVRRARKVVDGRSLL-PIERAVNII 206
                  57**************999998844.477774433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.98
# Mc/sec: 530.62
//
Query:       MMETSP0890-20130614|34691_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-11   44.1   0.5    1.6e-10   41.1   0.3    2.3  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.3   1.2e-14   1.6e-10      89     203 ..     316     477 ..     196     481 .. 0.63

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.2e-14
    PF04577.9  89 drlrsrlalkpr..............................kkp....rilyisRlkagsRriaNedellkllk......krgfevvdpe.elsfeeQvalfssakvivgphGsgLtnllFappgtrvlelvspprldle.......fenlaallgldyvyv 203
                  d++++ + ++++                              k++     +l+ sR ++ +R+++ e +ll+llk      +  f  ++ +   ++e  ++ +  a  i++phG+g++n++ + pgt +++l +   +++        f + a++l+l++++ 
  MMETSP0890-20130614|34691_1 316 DFVAKYVPQRRQyldsifrlhlvppallrlqaqllhkafprnKNKtnfiTVLIYSRSDTDKRHVVSESKLLDLLKikwkhhQIEFLLWRGGvAPDIERAARDWGRAALIIAPHGAGIANIIHCAPGTPIIVL-PAADCTGApsasdeyFIHTARALDLRLHFA 477
                  3333333333323333333333333344444445555444432225789999****9999**************999987777788888775666*************************************.776666667888889999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.51s 00:00:01.14 Elapsed: 00:00:00.95
# Mc/sec: 1286.47
//
Query:       MMETSP0890-20130614|34698_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-21   74.9   0.0    4.1e-21   74.5   0.0    1.1  1  PF04916.8 Phospholipase B


Domain annotation for each model (and alignments):
>> PF04916.8  Phospholipase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0     3e-25   4.1e-21     378     526 ..       3     141 ..       1     157 [. 0.81

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 3e-25
    PF04916.8 378 lkketywasyniPyfknvlelSgvekqqeklg..dwysydkspRakiFeRDeeevtdlaSlkkllRynnykkdllskcesckpPYsaelgIsaRgDlnpaagtlefeslgsvdhaakldvkvaevelikkl.raiavsGPvtdklPvFkWse 526
                  l +e+y++syn+P+ +++++lSg++   +k g  +  +y ++pRa+i +RD+ ++ +++  k +lR+n y      +++++ p  +   +I++RgDl          +  ++  a+++d k++   l+++   a ++ GP+ +++P+F W +
  MMETSP0890-20130614|34698_1   3 LLEESYFLSYNVPHIPKIYQLSGYSTLDQKRGrpEGSEYSQAPRAQIARRDQHTIKSIEDAKTFLRSNHYG-----QGDPLAP--NPWDAICSRGDLVRSE------TEQQPTLAGCYDAKISSDSLFQEHgAAFIINGPTNQHQPTFSWDN 141
                  6678********************66666655225689******************************995.....5666667..55778*******8765......3345667889*****999999666156677*************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.88
# Mc/sec: 609.98
//
Query:       MMETSP0890-20130614|34700_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-32  112.9   0.0      2e-16   59.8   0.0    2.1  2  PF02958.15 Ecdysteroid kinase
    3.7e-07   30.0   0.3    5.2e-07   29.5   0.2    1.3  1  PF01636.18 Phosphotransferase enzyme family
    2.8e-05   22.7   0.0    7.1e-05   21.4   0.0    1.6  2  PF07914.6  Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.3e-17   5.9e-14      27     162 ..      32     158 ..      17     175 .. 0.86
   2 !   59.8   0.0   4.4e-20     2e-16     199     285 ..     167     252 ..     154     258 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 1.3e-17
   PF02958.15  27 kslivKt...mp.geeekrellrslklFekEiavYekvlPeleallreagdefklapkcykaeeeee.eqvlvlEDLkekgykvadrlkgldlehlklvlkkLAkfHAaslalkeekpevfkqlkkglleedyvssakeef 162
                  + ++vK+   +p +++++ +++r+lk++++E ++Y+    +l++   ++       +k y +++ e+ e +l+lEDL+++g+    r    +l+ ++ ++++LA+fH + l++k +     k +++g++++  ++++  ef
  MMETSP0890-20130614|34700_1  32 RRVVVKHvcpPPvDDKATISHIRKLKSYQVEQQFYAACSQRLDDSHCRV-------AKFYGHRKYENeERFLILEDLDASGFAGRGRDYLHSLDAVRPMIQWLANFHRTFLHVKVD-----KLWDNGCYWHLDTRPD--EF 158
                  678999988867799999************************9866444.......68898885444489**********************************************.....9**********99994..33 PP

  == domain 2    score: 59.8 bits;  conditional E-value: 4.4e-20
   PF02958.15 199 ferlaelve..enesefnvLnHGDlwvnNimfkydeegepedvilvDFQlsrygspalDLlyflytsteeelrkekfdellrtYhesLv 285
                  ++++a++++   +++++++++HGD+++ N++f+ d +     v++vD+Q+   g  + DL+y++ ++++e+   +    ll++Y+e+L 
  MMETSP0890-20130614|34700_1 167 LKKYAHIFDalLKNAKYQTIVHGDAKIANFCFQKDTNA---PVAAVDYQYTGRGVGIRDLAYLIGSCVSEQNMLRWCPSLLDFYFEKLD 252
                  567777777888999********************996...**********************************************96 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.2   1.1e-10   5.2e-07      21     215 ..      32     234 ..      12     267 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.1e-10
                  .TEEEEE................ESSCCHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT.CSHHHHHHHHHHHHHHHHHHHHHS--TTSHGGHCTBCTHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHCSS--EEB-SS-SGGGEEEE.TTTTEEEE---TT-BBE-TCHHHHCCCTCHTCHH CS
   PF01636.18  21 gryvlrr................arparaaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler.klnarqlpallealaellaalhqadpaadpladflapyltllrllesataalvasellelleeleervlaalaallpgaeppvllHgDlhpgNllvd.pddgrvgviDfedaglgpplyDlasllrrwreel 215
                  +r+v+++                ++++ ++ e +  +a  ++L +++  v++ +   +  ++++  f +le +++  ++    +  +  ++++ +++ la++h+    +  +     ++  +++ l+ +  ++  s   +   +  +  +  ++all+ a  ++++HgD + +N  +  +++ +v+ +D +++g g  ++Dla+l+ ++++e+
  MMETSP0890-20130614|34700_1  32 RRVVVKHvcpppvddkatishirKLKS-YQVEQQFYAACSQRLDDSHCRVAKFYG--HRKYENEERFLILEDLDASGFAGrGRDYLHSLDAVRPMIQWLANFHRT---FLHVKVDKLWDNGCYWHLDTR--PDEFSRMNR--NDPLKKYAHIFDALLKNAKYQTIVHGDAKIANFCFQkDTNAPVAAVDYQYTGRGVGIRDLAYLIGSCVSEQ 234
                  577777765555555555544322233.555555667788888888888999988..566666667999999999999998555556788899999999999999...666666666666666666666..444444444..33333244444444444779****************7777777*********************4444433 PP

>> PF07914.6  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.18   8.4e+02     116     147 ..      62      94 ..      45     142 .. 0.61
   2 !   21.4   0.0   1.6e-08   7.1e-05     268     338 ..     184     251 ..     157     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.18
    PF07914.6 116 EvelYkil.eklnhedilltkvyflkkfdeenk 147
                  E ++Y    ++l+++++ ++k+y  +k+++e++
  MMETSP0890-20130614|34700_1  62 EQQFYAACsQRLDDSHCRVAKFYGHRKYENEER 94 
                  556665441456677777777777777776654 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.6e-08
    PF07914.6 268 kvlvhgDlwqaNiLfseeeegklklkkiiDyQlvslgnpaeDlvrlllscLsgedRrarkeelLeqyyetf 338
                  + +vhgD   aN+ f++++++     + +DyQ   +g    Dl+ l+ sc+s+++      +lL+ y+e +
  MMETSP0890-20130614|34700_1 184 QTIVHGDAKIANFCFQKDTNA---PVAAVDYQYTGRGVGIRDLAYLIGSCVSEQNMLRWCPSLLDFYFEKL 251
                  5689*************9984...44679**************************999999*****99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.35s 00:00:00.99 Elapsed: 00:00:00.94
# Mc/sec: 846.37
//
Query:       MMETSP0890-20130614|34729_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00012   21.6   0.0     0.0003   20.4   0.0    1.7  1  PF08240.7  Alcohol dehydrogenase GroES-like domain
    0.00017   20.4   0.0    0.00024   19.9   0.0    1.3  1  PF01266.19 FAD dependent oxidoreductase
     0.0055   16.2   0.0      0.009   15.5   0.0    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.046   13.0   0.0    1.3  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.043   13.7   0.0       0.12   12.2   0.0    1.7  1  PF13450.1  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> PF08240.7  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07    0.0003       2      61 ..       6      79 ..       5      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.1e-07
                 TEEEEEEEEB---.HHHHHHH--..............TTTT--SSEE----BE-EEEEE----B------EEEE CS
    PF08240.7  2 gevlvkvkaaGiC.gsDlhivkge.............kelevklplilGhEivGiveevgegvkklkvGdrvvv 61
                 +evlv++ + G+  g++  +v+g+             +    ++p+  G   vGi+e++g++vk+l+ G +v++
  MMETSP0890-20130614|34729_1  6 DEVLVRTLWSGVSrGTESIVVRGGvpesehqrmrgpnQGGDFSFPVKYGYSSVGIIEAIGSQVKNLRLGVKVFC 79
                 689999999999746888888888898888888888888899999************************99975 PP

>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   8.9e-08   0.00024       1      67 [.     131     218 ..     131     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 8.9e-08
                  EEEEE----HHHHHHHHHHH.TT-EEEEEESSSTTS....................SCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHH CS
   PF01266.19   1 dvviiGgGivGlstAyeLar.rglkVtllekgdias....................gaSgrngglihagllkerdprllrlalesldl 67 
                  +++++GgG+vGl +A+ + r +g +V+l + ++  +                    +aSg+ +gl     l+ +++ +++ + ++ +l
  MMETSP0890-20130614|34729_1 131 KICVVGGGVVGLLIAFLCVRtPGCQVVLKDPQPRTEqckalgihifnnqnefdiviHASGNPAGLADCLSLASDEAIIVEASWHANQL 218
                  589*****************************77766999999999999999999999999999887776666666777777777665 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.3e-06     0.009       1      33 [.     131     164 ..     131     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.3e-06
                  EEEEE---------HHHHHCT..SEEEEE-S-HH CS
   PF02737.13   1 kvaVvGaGtmGagiAavfara.gleVvlvdisee 33 
                  k+ VvG G++G  iA +++r+ g++Vvl d+++ 
  MMETSP0890-20130614|34729_1 131 KICVVGGGVVGLLIAFLCVRTpGCQVVLKDPQPR 164
                  689*****************99********9764 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05     0.046       1      50 [.     132     182 ..     132     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
                  EEEE-----------HHHH.HHH-EEEE----HHHHHH----EEE-SS-EE CS
   PF02558.11   1 iailGaGaiGsllaakLak.agadvtlilrsrrlealkknglrlksdkgee 50 
                  i+++G G +G l+a    +  g++v+l + ++r e++k  g+++ ++++e+
  MMETSP0890-20130614|34729_1 132 ICVVGGGVVGLLIAFLCVRtPGCQVVLKDPQPRTEQCKALGIHIFNNQNEF 182
                  89*************99999***********************99988544 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.6e-05      0.12       1      30 [.     134     164 ..     134     166 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.6e-05
    PF13450.1   1 IvGaGlsGlvaAylLaka.gkdvlvlekrdr 30 
                  +vG+G+ Gl +A+l+ +  g +v++ + ++r
  MMETSP0890-20130614|34729_1 134 VVGGGVVGLLIAFLCVRTpGCQVVLKDPQPR 164
                  8***************988****99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.70
# Mc/sec: 1102.32
//
Query:       MMETSP0890-20130614|34739_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-25   87.5   0.0    8.1e-25   87.2   0.0    1.1  1  PF02263.14 Guanylate-binding protein, N-terminal domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.17   11.5   0.0    1.3  1  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF02263.14  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   1.2e-28   8.1e-25       6     113 ..      25     159 .]      21     159 .] 0.95

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 1.2e-28
                  E-HHHHHHHTTTTSBEEEEEEE--TT---HHHHHHHHH..........B-----------ST----EE-SS-.................-----EEEEEEEE-----S.SCCHTHHSHHHHHHHHHH-SEEEEEE CS
   PF02263.14   6 lneealeileaidqpvvvvaivGlyrkGksfLlnklar..........kkkgFslrstvesetkGiliWcep.................hpkkekvalvLlDteGlgDveksdvkddatiFaLavllssvfvYns 113
                    +eal++l++++ +++v+a++G yr+Gks L+n l++            + F ++  +e+ t+Gi++W +p                 + + ++ al+ lDteGlg +   d   +atiFaL+ ll+s+++Yns
  MMETSP0890-20130614|34739_1  25 AHDEALNVLSRMKMRLCVLAVAGGYRTGKSSLMNWLVQqrdgviqaqdADDFFCVGHEIERCTRGIWMWGQPalmnewggdlfmvpgndKNSAQDRALLFLDTEGLGGLGDVDSVYEATIFALSALLASTLLYNS 159
                  5789**********************************99999999887888**********************************9977788899**************************************7 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.17       1      22 [.      43      64 ..      43      68 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.5e-05
                 EEEE--TT---HHHHHHH---- CS
   PF00350.18  1 iavvGsqSaGKSSllnaLlged 22
                 +av G + +GKSSl+n L++++
  MMETSP0890-20130614|34739_1 43 LAVAGGYRTGKSSLMNWLVQQR 64
                 5899**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 586.19
//
Query:       MMETSP0890-20130614|34750_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   15.3   0.1      0.017   14.5   0.0    1.3  1  PF13847.1 Methyltransferase domain
      0.024   15.1   0.0      0.036   14.5   0.0    1.3  1  PF12847.2 Methyltransferase domain
      0.041   13.2   0.0      0.061   12.6   0.0    1.3  1  PF10294.4 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.8e-06     0.017       3      46 ..      61     109 ..      59     120 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.8e-06
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgak.....vvGiDiseeaielAke 46 
                  ++i+vl lGCGt  l+l+++++l ++       vv  D+s  a+e+ +e
  MMETSP0890-20130614|34750_1  61 KNIRVLHLGCGTSLLGLKIFQKLEDDYGisietVVNTDCSSRALERLEE 109
                  799*****************9776633344669***********99887 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     8e-06     0.036       1      84 [.      61     160 ..      61     186 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8e-06
    PF12847.2   1 kgkrilDlGcGtGslslelar...lrpgak...vvgvDpseeslelarena....ksldleeriellqgdakeelsller.......fDavllkgltldal 84 
                  k+ r+l lGcGt +l+l + +   +++g     vv  D s  +le+++e +    ++ +  +r   +q+   +++++ ++       f ++l+kg tldal
  MMETSP0890-20130614|34750_1  61 KNIRVLHLGCGTSLLGLKIFQkleDDYGISietVVNTDCSSRALERLEELTcievSKYQDPDRYMTHQQYYCWDATQSTCignnihdFHLLLDKG-TLDAL 160
                  6889*****************65544555444566668899999999988888887888888888888666555555555666777799999999.66644 PP

>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.061      39      86 ..      54     108 ..      32     153 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
    PF10294.4  39 elgsnelsglsvlELGsGtGlvGiavall......lpeakviltDlee.llellk 86 
                  +  +++l++++vl LG Gt l G+ + ++       +   v+ tD +  +le l+
  MMETSP0890-20130614|34750_1  54 QNIKTNLKNIRVLHLGCGTSLLGLKIFQKleddygISIETVVNTDCSSrALERLE 108
                  3457899*****************9988866654324455666776654555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       458  (0.0334991); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.82
# Mc/sec: 736.44
//
Query:       MMETSP0890-20130614|34761_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-10   39.6   0.0    5.2e-10   39.1   0.0    1.2  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.8e-14   5.2e-10       5      72 ..      82     159 ..      79     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 3.8e-14
                  --CT-EEEEEEEEEE...---EEEETTT........TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S CS
   PF00254.23   5 akegdtVtvhyegkl.e.dgtvfdssys........rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYg 72 
                  ++  ++V ++ +g++   dg +f ss +         a+p+++++G+g +++g+eeg++g k++e r++++p + +Y 
  MMETSP0890-20130614|34761_1  82 VTSSSIVLLEVTGRFlNlDGVKFYSSADnidssklnMAEPLKVQLGTGLLVPGIEEGIIGAKKNEIRRIIVPASRGYD 159
                  788899*********645799999994444455566****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       304  (0.0222352); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.31s 00:00:00.77 Elapsed: 00:00:00.74
# Mc/sec: 673.57
//
Query:       MMETSP0890-20130614|34766_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-07   28.6  19.2    1.9e-06   27.5  12.2    2.4  2  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5  12.2   1.4e-10   1.9e-06       4      40 .]     144     179 ..     130     179 .. 0.89
   2 ?   -0.6   0.0     0.083   1.1e+03      27      37 ..     319     329 ..     317     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.4e-10
                  T--.B----EE----S--EESSHHHHHHHH.HHHTTTH CS
   PF01753.13   4 CgkaealkllrCsgCksvkYCskeCQradw.keHkkeC 40 
                  C + ++lk  +C+ C+ ++YCs +CQ+++w +eH+++C
  MMETSP0890-20130614|34766_1 144 CSTIKNLK--QCTSCRLTYYCSLKCQKEHWkEEHRDDC 179
                  66666777..********************889***** PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.083
                  HHHHHHHHHHT CS
   PF01753.13  27 eCQradwkeHk 37 
                   CQ +d   H 
  MMETSP0890-20130614|34766_1 319 FCQAEDADMHE 329
                  6*****99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       852  (0.0623171); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.91
# Mc/sec: 1266.65
//
Query:       MMETSP0890-20130614|34773_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.71
# Mc/sec: 685.16
//
Query:       MMETSP0890-20130614|34774_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   12.6   0.0      0.057   12.5   0.0    1.3  1  PF08433.5 Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.2e-06     0.057     127     156 ..      10      47 ..       4      92 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.2e-06
    PF08433.5 127 kelleaLiqRfEeP........dsknrWDsPlftvlsa 156
                  + l+e+Li+Rf+ P        +++ +WD+P f+v++a
  MMETSP0890-20130614|34774_1  10 SRLIEQLINRFDLPtsngfpilNDNLQWDQPDFSVVGA 47 
                  5799*********9333333334568*********974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 351.96
//
Query:       MMETSP0890-20130614|34778_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-10   39.6   0.6    3.3e-10   39.1   0.4    1.3  1  PF01176.14 Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> PF01176.14  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.4   2.4e-14   3.3e-10       1      56 [.      54     108 ..      54     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 2.4e-14
                  SS--BE-EEE--------EEEEE---EEE-------HHHH------EEEE--B--- CS
   PF01176.14   1 eegevigqVtkllGnglfeVeledGkerlahipgKfrkkiwikrGDfVlVelsdyd 56 
                  ee+e i++V k+ G  ++eV+ ++Gk+ l+ +p +f + iwikrGDf++V++ d++
  MMETSP0890-20130614|34778_1  54 EENERIVRVFKVIGK-HIEVTEASGKNALCLLPQRFHRVIWIKRGDFLIVSVGDEE 108
                  68999********96.79********************************996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1051  (0.0768724); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.46s 00:00:01.04 Elapsed: 00:00:00.83
# Mc/sec: 594.76
//
Query:       MMETSP0890-20130614|34786_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       151  (0.0110445); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.37s 00:00:00.75 Elapsed: 00:00:00.70
# Mc/sec: 369.72
//
Query:       MMETSP0890-20130614|34792_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.36s 00:00:00.96 Elapsed: 00:00:00.85
# Mc/sec: 992.37
//
Query:       MMETSP0890-20130614|34809_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    8.9   5.5         37    5.0   0.1    5.1  6  PF13504.1 Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1   1.4e+04       1      11 [.     308     318 ..     308     321 .. 0.78
   2 ?   -1.9   0.0      0.54   7.3e+03       3      14 ..     339     351 ..     339     354 .. 0.85
   3 ?   -1.2   0.0       0.3   4.1e+03       1      12 [.     363     374 ..     363     378 .. 0.83
   4 ?    0.9   0.0      0.06   8.2e+02       1       9 [.     413     421 ..     413     426 .. 0.90
   5 ?    5.0   0.1    0.0027        37       1      17 []     436     453 ..     436     453 .. 0.93
   6 ?   -1.0   0.0      0.26   3.5e+03       2      10 ..     501     509 ..     501     518 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1
    PF13504.1   1 pnLkeLdLsgn 11 
                  p+L+ L L  +
  MMETSP0890-20130614|34809_1 308 PQLECLELTKC 318
                  67999999777 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.54
    PF13504.1   3 LkeLdLsgnr.Lt 14 
                  L+ L L  ++ +t
  MMETSP0890-20130614|34809_1 339 LRSLCLYKCYgIT 351
                  899***9998676 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.3
    PF13504.1   1 pnLkeLdLsgnr 12 
                  pnL +L L++ r
  MMETSP0890-20130614|34809_1 363 PNLDTLELHHAR 374
                  7999****9865 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.06
    PF13504.1   1 pnLkeLdLs 9  
                  pnL++L+L 
  MMETSP0890-20130614|34809_1 413 PNLRTLRLG 421
                  7******96 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.0027
    PF13504.1   1 pnLkeLdLsgnr.LtsLP 17 
                  ++L+ L+L++++ L++LP
  MMETSP0890-20130614|34809_1 436 TKLQCLNLMHTYaLEHLP 453
                  68*********99***99 PP

  == domain 6    score: -1.0 bits;  conditional E-value: 0.26
    PF13504.1   2 nLkeLdLsg 10 
                  +L++L+L++
  MMETSP0890-20130614|34809_1 501 SLRVLSLAD 509
                  69****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:01.20
# Mc/sec: 1252.10
//
Query:       MMETSP0890-20130614|34828_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-08   34.3   0.1    2.7e-08   34.0   0.1    1.1  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1     2e-12   2.7e-08      71     209 ..      14     139 ..       4     141 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 2e-12
                  HHHHHHH----SEEE...EEEEE..E---S-----E.EEE-GGGTS-EE----EE-EEEESS-B-S--.-..-EEEE---------.......................-EEE----..............----....... CS
    PF05721.8  71 vadlvrailgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateen.G..clrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                  ++ l+ ++lg + +      ++yq+ ++ +++ + +++wH D   +p+d ++ +v++wi l d+++ + G  +l +   SH+  +    +  p++d+ ++         e + +  ++aGd+ ++hg++lH ++aN+ +  R
  MMETSP0890-20130614|34828_1  14 LTMLAAELLGTTQV------RLYQTSIFRKRPNDLATRWHSDLRAAPID-TNDFVTAWIPLHDIPPAEyGgtGLLYADASHRD-VASALWYGPDHDASNR--------YECTDHGFISAGDISWHHGWCLHSAAANTLSEER 139
                  55566666666654......67777445555667778**********99.6*************9765462246788899999.77799********999........55566777899*****************866666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:01.43
# Mc/sec: 289.91
//
Query:       MMETSP0890-20130614|34829_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                      109  (0.0079725); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 270.89
//
Query:       MMETSP0890-20130614|34824_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-27   93.8   0.0    1.2e-26   93.5   0.0    1.1  1  PF00481.16 Protein phosphatase 2C
    0.00045   19.5   0.0    0.00098   18.4   0.0    1.5  1  PF13672.1  Protein phosphatase 2C
      0.006   16.1   0.0       0.23   11.0   0.0    2.1  2  PF07228.7  Stage II sporulation protein E (SpoIIE)
  ------ inclusion threshold ------
      0.097   12.1   0.1       0.18   11.3   0.0    1.4  1  PF10088.4  Uncharacterized protein conserved in bacteria (DUF2326)


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   3.5e-30   1.2e-26      96     257 .]       7     193 ..       1     193 [. 0.92

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 3.5e-30
                  .HTT---EEEEEEESSSEEEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-.T--EE---.............................BSBSB----HHHC---ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHHHHHHHHHHHHTHHHHHTS-SSHHHHHHHHHHHH CS
   PF00481.16  96 epsksGstavvalirgqklyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsn.gngRvngs.............................LavsRalGdfelkpkekeqlvsaePdvtsvkideedefliLasDGlwdvlsdqeavdlvrselskkkspmeaaeelvdeaiargsedni 257
                   +++  stavva + ++++ +A vGDS a+++++d +++ lt  H ++n++E++RI+++gg++ + +     gs                                +R +G + lk  +  +lv+a+Pd+ + k++e+d +liLasDGl++ ++ +++ ++++   +    p ++a +lv+ + + g++dni
  MMETSP0890-20130614|34824_1   7 GKWHDASTAVVAAMDSKTIRIASVGDSLALIVQRDYSFTVLTLPHLATNPQEKARIKALGGKIGRsQAEAQAGStkklmnkiagpaatfktnqnnpkrvypggTTFTRCIGGLPLKYAP-LKLVVADPDMIEYKRKENDLCLILASDGLFEQINVDKMTQMIKMIKD----PATIAPALVKASESAGTKDNI 193
                  679999**********************************************************87444444447999999***********************************977.55****************************************98755....********************7 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.9e-07   0.00098      97     188 ..      12     165 ..      10     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.9e-07
    PF13672.1  97 atTlllavitpgeivffqiGDgaivvrdrdgevqllgepds......................geyanettfltsedaeeel........................................rvrrlklepv.dalllmTDGlsnslrdeeafap 188
                  a+T ++a++++++i ++++GD+ +++++rd ++++l+ p+                       ++ a+ t  l  + a++ +                                        ++ + k++++  +l+l +DGl ++++  +++++
  MMETSP0890-20130614|34824_1  12 ASTAVVAAMDSKTIRIASVGDSLALIVQRDYSFTVLTLPHLatnpqekarikalggkigrsqaEAQAGSTKKLMNKIAGPAAtfktnqnnpkrvypggttftrcigglplkyaplklvvadpDMIEYKRKENdLCLILASDGLFEQIN-VDKMTQ 165
                  79************************************9987777777777777777766665444566666666655555588888888888999999999999999999999999***997777775444269999****997774.333333 PP

>> PF07228.7  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015        52      63      94 ..      14      43 ..       4      60 .. 0.79
   2 !   11.0   0.0   6.7e-05      0.23     118     189 ..     137     197 ..      95     200 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.015
                 -EEE-EEES----EEEEEE-----EEE-TTS- CS
    PF07228.7 63 tavlaeydpstgkleyanaGhpppllvrpdgg 94
                 tav+a    +++++++a++G++ +l+v++d  
  MMETSP0890-20130614|34824_1 14 TAVVAA--MDSKTIRIASVGDSLALIVQRDYS 43
                 666666..788899*************99654 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 6.7e-05
                  EE------E.EEEE-----S--HHHHHH....HHHHHT----------HHHHHHHHHHHHCT----S-EEEEE CS
    PF07228.7 118 elqlepgdl.lllyTDGvtEardpdgelfgkerllallaeaegesleelldalveellelgsgeleDDitllv 189
                  e++ +++dl l+l++DG++E+ + d+ +    + +++++      ++ ++ alv++ +++g    +D i+ +v
  MMETSP0890-20130614|34824_1 137 EYKRKENDLcLILASDGLFEQINVDKMT----QMIKMIK--D---PATIAPALVKASESAG---TKDNISAVV 197
                  555555554399**********888877....7777777..4...8899999999888854...677776665 PP

>> PF10088.4  Uncharacterized protein conserved in bacteria (DUF2326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.3e-05      0.18      49      89 ..     132     172 ..     125     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.3e-05
    PF10088.4  49 DlallllakeekklpkFlihDglfegvDdrqkakllklvne 89 
                  D  +++++ +e+ l+ +l  Dglfe++  ++ ++++k+++ 
  MMETSP0890-20130614|34824_1 132 DPDMIEYKRKENDLCLILASDGLFEQINVDKMTQMIKMIKD 172
                  666888889999*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.77
# Mc/sec: 625.54
//
Query:       MMETSP0890-20130614|34823_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-10   39.0   0.0    1.4e-09   38.1   0.0    1.4  1  PF08241.7  Methyltransferase domain
    4.3e-07   29.6   0.0    5.4e-07   29.3   0.0    1.2  1  PF13489.1  Methyltransferase domain
    5.5e-05   23.4   0.0    8.4e-05   22.8   0.0    1.3  1  PF08242.7  Methyltransferase domain
      0.001   19.2   0.0     0.0014   18.8   0.0    1.4  1  PF13649.1  Methyltransferase domain
     0.0011   17.9   0.0     0.0016   17.5   0.0    1.1  1  PF01209.13 ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.044   13.2   0.0      0.055   12.9   0.0    1.2  1  PF13847.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   6.3e-13   1.4e-09      22      92 ..     113     177 ..      96     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 6.3e-13
    PF08241.7  22 vtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGl 92 
                  ++  D+  ++ a+a e+       ++ ad++ +p ++++  +v++ +v+eh++d +ka++eiaRvL pgG 
  MMETSP0890-20130614|34823_1 113 LIRYDIFDRAYARAYENS------TIYADVQAIPRDNSTLNAVIILHVIEHVPDAKKAVSEIARVLAPGGF 177
                  555566666333333222......889*******************************************7 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.4e-10   5.4e-07      46     143 ..     112     211 ..      67     216 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.4e-10
    PF13489.1  46 dvtgvDpspaaigkakqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdea.fakwdylvprg.thi..sff 143
                  +++ +D+ + a  +a+ +    +d ++   ++ + + ++  +v+ehvpd ++++++ia+ l+pgG +  +tp+ s ++ +  ++   +  +r+ +hi  s++
  MMETSP0890-20130614|34823_1 112 KLIRYDIFDRAYARAYENSTIYADVQAIPRDNSTLNAVIILHVIEHVPDAKKAVSEIARVLAPGGFVDAETPCFSRPHNSPpAL--ACSKNRNgRHIvsSLY 211
                  667777766655554444445555555666888**********************************99999755333333122..3444444477655555 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.7e-08   8.4e-05      64      98 ..     137     177 ..      98     178 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.7e-08
    PF08242.7  64 g......ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  +      s+  +v++++v++h++d ++++++i+++L+pgG 
  MMETSP0890-20130614|34823_1 137 QaiprdnSTLNAVIILHVIEHVPDAKKAVSEIARVLAPGGF 177
                  03334446999*****************************7 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.1e-07    0.0014      50     101 .]     128     176 ..      42     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6.1e-07
    PF13649.1  50 kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  + + + ad++a+p ++++ ++v++  +++eh+   +++++++eiarvl pgG
  MMETSP0890-20130614|34823_1 128 ENSTIYADVQAIPRDNSTLNAVII-LHVIEHVP--DAKKAVSEIARVLAPGG 176
                  445789******************.67799975..78899**********99 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.9e-07    0.0016     103     150 ..     132     179 ..     116     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.9e-07
   PF01209.13 103 lqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlv 150
                  + a+ +++p ++ + + v + + +  v+D +ka+ e+ rvl pGG + 
  MMETSP0890-20130614|34823_1 132 IYADVQAIPRDNSTLNAVIILHVIEHVPDAKKAVSEIARVLAPGGFVD 179
                  6788899**************************************874 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.4e-05     0.055      60     112 ..     133     184 ..     109     214 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.4e-05
    PF13847.1  60 qgdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                   +d++++++  +++ + vi   v+++++d +k++ ei rvl pgg + +e+p+
  MMETSP0890-20130614|34823_1 133 YADVQAIPRD-NSTLNAVIILHVIEHVPDAKKAVSEIARVLAPGGFVDAETPC 184
                  4678888866.466788888899*********************977666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 753.14
//
Query:       MMETSP0890-20130614|34834_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   14.9   1.1       0.74   10.0   0.1    2.3  2  PF13646.1  HEAT repeats
       0.34   11.0   3.4       0.58   10.2   0.0    3.0  4  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00011      0.74      45      86 ..      35      78 ..      15      93 .. 0.75
   2 ?    3.7   0.0    0.0099        68      11      59 ..     112     164 ..     107     185 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00011
    PF13646.1 45 pevRraAaeaLgklg..dpealpaLlklldddedavvreaaaea 86
                 ++vR +Aa a g+++      ++ L   +d++++  v++ +a+a
  MMETSP0890-20130614|34834_1 35 EAVRSSAASAFGRISklGTVTIASLSTFFDSENSKNVQRLLAQA 78
                 67999999999999633244677777777777777777766655 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0099
    PF13646.1  11 dpdpevraaaieaLgqlgse..ealpaLlelL..kdsdpevRraAaeaLgklg 59 
                  d+++++ a+++  Lg++  +  +a+++  + L   +++  + ++Aa aL++++
  MMETSP0890-20130614|34834_1 112 DNEEKLVAETVTQLGEISKDlgAAMATAASGLgqASKETGLGQTAADALSAIS 164
                  77888888999999988665567777777777644666779999999999986 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.5e-05      0.58      11      29 ..      30      50 ..      20      52 .. 0.83
   2 ?   -1.8   0.0       0.6   4.1e+03      16      29 ..     117     130 ..     111     132 .. 0.60
   3 ?   -3.2   0.1       1.8   1.2e+04      19      26 ..     138     145 ..     137     148 .. 0.80
   4 ?   -0.4   0.1      0.22   1.5e+03      19      29 ..     155     165 ..     154     167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8.5e-05
                 SS..SHHHHHHHHHHHHHHHH CS
   PF02985.17 11 Dp..speVReaAaeaLgalae 29
                 D+  ++ VR++Aa+a+g++++
  MMETSP0890-20130614|34834_1 30 DEalAEAVRSSAASAFGRISK 50
                 5566789************97 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.6
                  HHHHHHHHHHHHHH CS
   PF02985.17  16 VReaAaeaLgalae 29 
                    + +++ Lg++++
  MMETSP0890-20130614|34834_1 117 LVAETVTQLGEISK 130
                  55556666777766 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.8
                  HHHHHHHH CS
   PF02985.17  19 aAaeaLga 26 
                  +Aa+ Lg+
  MMETSP0890-20130614|34834_1 138 TAASGLGQ 145
                  79999997 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.22
                  HHHHHHHHHHH CS
   PF02985.17  19 aAaeaLgalae 29 
                  +Aa aL+a++ 
  MMETSP0890-20130614|34834_1 155 TAADALSAISA 165
                  89*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       856  (0.0626097); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.84
# Mc/sec: 562.00
//
Query:       MMETSP0890-20130614|34841_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 306.04
//
Query:       MMETSP0890-20130614|34847_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-46  153.8  25.2    2.3e-11   43.4   0.1    7.7  7  PF13415.1  Galactose oxidase, central domain
    2.6e-38  129.4  20.0    7.9e-09   35.0   0.2    6.5  6  PF13418.1  Galactose oxidase, central domain
    4.7e-38  128.4  18.8    1.8e-05   24.4   0.0    6.4  6  PF13854.1  Kelch motif
    2.1e-34  116.6  16.0    2.4e-06   26.8   0.0    6.3  6  PF01344.20 Kelch motif
    3.4e-34  115.4  16.3    1.5e-06   28.0   0.1    6.6  6  PF13964.1  Kelch motif
    5.4e-33  111.6  19.0      2e-05   24.3   0.2    6.5  6  PF07646.10 Kelch motif
    7.6e-20   70.8   0.1    2.5e-19   69.1   0.0    1.8  2  PF00651.26 BTB/POZ domain
    0.00013   21.6   0.1    0.00055   19.6   0.0    1.9  2  PF07707.10 BTB And C-terminal Kelch


Domain annotation for each model (and alignments):
>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.48   8.2e+02      29      48 ..       5      26 ..       2      27 .. 0.84
   2 !   28.7   0.1   5.5e-10   9.4e-07       2      42 ..      29      70 ..      28      76 .. 0.87
   3 !   43.4   0.1   1.3e-14   2.3e-11       1      49 []      78     128 ..      78     128 .. 0.95
   4 !   19.7   0.0   3.5e-07    0.0006       2      46 ..     130     174 ..     130     176 .. 0.91
   5 !   40.6   0.1     1e-13   1.7e-10       3      48 ..     180     226 ..     178     227 .. 0.94
   6 !   17.2   0.4   2.2e-06    0.0038       2      47 ..     229     297 ..     228     299 .. 0.73
   7 !   16.4   0.5     4e-06    0.0069       3      24 ..     302     321 ..     300     328 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.48
    PF13415.1 29 ntweei..gslPppRaghtata 48
                 + we +  ++ P+ R+ h a++
  MMETSP0890-20130614|34847_1  5 MPWEVVsrDDGPCQRSLHVAAV 26
                 57998888999*******9886 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 5.5e-10
    PF13415.1  2 delyvfGGlgddgqtrlndvyvldldtntweei..gslPp.pRa 42
                 d+l++fGG++  g +r nd++ ++ +  +w  +  g +Pp pR 
  MMETSP0890-20130614|34847_1 29 DKLIIFGGYD--GSNRVNDLWLYSFTQEEWSLVrgGGMPPsPRD 70
                 89********..*******************9998776665886 PP

  == domain 3    score: 43.4 bits;  conditional E-value: 1.3e-14
    PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldtntweei....gslPppRaghtatai 49 
                  g ++y+fGG++  g  r nd+++++l + +w ++    g++P++R++h+++++
  MMETSP0890-20130614|34847_1  78 GSSFYIFGGFD--GISRVNDMHEFSLGSHSWSQVrpmnGQPPSARHSHAGVVY 128
                  6789*******..9********************999************9986 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 3.5e-07
    PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntweei...gslPppRaghta 46 
                  d++y+fGG++   +++ +d+++++  t +w +i   g+ P +R+ +t+
  MMETSP0890-20130614|34847_1 130 DSVYIFGGYD---GAYRSDFHEFNFITSSWCPIiaeGRAPRARYRATC 174
                  679*******...99******************999999999986665 PP

  == domain 5    score: 40.6 bits;  conditional E-value: 1e-13
    PF13415.1   3 elyvfGGlgddgqtrlndvyvldldtntweei...gslPppRaghtata 48 
                  ++y+fGG +  g   lndv+v+d++ + w+e+   g+ P+pR +hta a
  MMETSP0890-20130614|34847_1 180 YMYLFGGHD--GHRHLNDVHVFDINQRRWAELdtdGPAPTPRDSHTAIA 226
                  8********..*******************99999***********965 PP

  == domain 6    score: 17.2 bits;  conditional E-value: 2.2e-06
    PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntwe.......ei.................gsl..PppRaghtat 47 
                    +yvfGG++   + +  d+yvl ldt +w        +i                 +s+  P++R +h a+
  MMETSP0890-20130614|34847_1 229 RCMYVFGGST---GIAMDDFYVLRLDTANWShviennnQIdttsqddqdiehdtdtnASIihPGARFCHVAV 297
                  469*******...9999***********99955555552244556666666666666665778899999776 PP

  == domain 7    score: 16.4 bits;  conditional E-value: 4e-06
    PF13415.1   3 elyvfGGlgddgqtrlndvyvl 24 
                   ly+fGG++  g++rlnd++++
  MMETSP0890-20130614|34847_1 302 ALYIFGGYD--GGNRLNDFLRF 321
                  59*******..*********98 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.2   4.6e-12   7.9e-09       2      46 ..      19      66 ..      18      69 .. 0.86
   2 !   22.3   0.2   4.2e-08   7.1e-05       2      48 ..      69     117 ..      68     118 .. 0.82
   3 !   19.0   0.0   4.5e-07   0.00076       6      46 ..     125     164 ..     119     167 .. 0.80
   4 !   27.8   0.0   8.1e-10   1.4e-06       1      48 [.     168     216 ..     168     217 .. 0.91
   5 !   16.9   0.1   2.1e-06    0.0037       1      41 [.     218     255 ..     218     263 .. 0.86
   6 !   19.1   0.1   4.3e-07   0.00074       1      34 [.     290     321 ..     290     323 .. 0.92

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 4.6e-12
    PF13418.1  2 RaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl.....ps 46
                 R  h+a  + +++l++fGG++++  + nDl+++++++ +W+ +     p+
  MMETSP0890-20130614|34847_1 19 RSLHVAAVW-RDKLIIFGGYDGS-NRVNDLWLYSFTQEEWSLVrgggmPP 66
                 778999999.57**********9.6***************9888855544 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 4.2e-08
    PF13418.1   2 RaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl....pslP 48 
                  R  h+   ++  ++y+fGG ++  ++ nD++ f+l + +W+++    +++P
  MMETSP0890-20130614|34847_1  69 RDRHVGLVWG-SSFYIFGGFDGI-SRVNDMHEFSLGSHSWSQVrpmnGQPP 117
                  5556666675.69**********.8***************99966666666 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 4.5e-07
    PF13418.1   6 savavpdgrlylfGGenedggplnDlyvfDlstntWtrl...ps 46 
                  ++v++  +++y+fGG+++     +D++ f++ t +W ++   + 
  MMETSP0890-20130614|34847_1 125 GVVYL--DSVYIFGGYDG--AYRSDFHEFNFITSSWCPIiaeGR 164
                  35666..49*********..59**************99866555 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 8.1e-10
    PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl...pslP 48 
                  +R+ +++v v   ++ylfGG ++ +  lnD++vfD+++++W +l   +++P
  MMETSP0890-20130614|34847_1 168 ARYRATCVRVE-TYMYLFGGHDG-HRHLNDVHVFDINQRRWAELdtdGPAP 216
                  79999*****5.8**********.7******************98887777 PP

  == domain 5    score: 16.9 bits;  conditional E-value: 2.1e-06
    PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvfDlstntW 41 
                  pR +h+a+a + + +y+fGG ++   +++D+yv+ l+t  W
  MMETSP0890-20130614|34847_1 218 PRDSHTAIAHG-RCMYVFGGSTGI--AMDDFYVLRLDTANW 255
                  7899****995.57*********7..8******98887555 PP

  == domain 6    score: 19.1 bits;  conditional E-value: 4.3e-07
    PF13418.1   1 pRaghsavavpdgrlylfGGenedggplnDlyvf 34 
                  +R++h+av   +  ly+fGG+++ g +lnD+ +f
  MMETSP0890-20130614|34847_1 290 ARFCHVAVEY-RAALYIFGGYDG-GNRLNDFLRF 321
                  7*******97.79**********.68****9887 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.9e-08   3.3e-05       2      38 ..      16      50 ..      15      53 .. 0.94
   2 !   21.7   0.2   7.3e-08   0.00012       1      39 [.      65     101 ..      65     104 .. 0.86
   3 !   19.8   0.5     3e-07   0.00051       1      26 [.     116     143 ..     116     150 .. 0.87
   4 !   24.4   0.0     1e-08   1.8e-05       2      40 ..     166     202 ..     165     204 .. 0.95
   5 !   24.3   0.0   1.1e-08   1.9e-05       2      41 ..     216     252 ..     215     253 .. 0.95
   6 !   23.6   0.1   1.9e-08   3.3e-05       1      38 [.     287     322 ..     287     323 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.9e-08
    PF13854.1  2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLs 38
                 P++R+ h a+v++++++++GG++g  ++  +d++ +s
  MMETSP0890-20130614|34847_1 16 PCQRSLHVAAVWRDKLIIFGGYDG--SNRVNDLWLYS 50
                 9**********************6..999******98 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 7.3e-08
    PF13854.1   1 lPppRarhcavvvsgniylyGGksgnddsvsddvyvLsl 39 
                  +P+pR rh   v+++++y++GG++g   s  +d++ +sl
  MMETSP0890-20130614|34847_1  65 PPSPRDRHVGLVWGSSFYIFGGFDG--ISRVNDMHEFSL 101
                  5***********************6..666788887776 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 3e-07
    PF13854.1   1 lPppRarhcavvvsgniylyGGksg..n 26 
                  +P++R++h+ vv+ +++y++GG++g  +
  MMETSP0890-20130614|34847_1 116 PPSARHSHAGVVYLDSVYIFGGYDGayR 143
                  59**********************8543 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 1e-08
    PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLslp 40 
                  P +R+r+  v v++++yl+GG +g     ++dv+v++++
  MMETSP0890-20130614|34847_1 166 PRARYRATCVRVETYMYLFGGHDG--HRHLNDVHVFDIN 202
                  99*********************6..***********97 PP

  == domain 5    score: 24.3 bits;  conditional E-value: 1.1e-08
    PF13854.1   2 PppRarhcavvvsgniylyGGksgnddsvsddvyvLslps 41 
                  P+pR +h a++++  +y++GG +   ++  dd+yvL l +
  MMETSP0890-20130614|34847_1 216 PTPRDSHTAIAHGRCMYVFGGST---GIAMDDFYVLRLDT 252
                  9**********************...8*********9865 PP

  == domain 6    score: 23.6 bits;  conditional E-value: 1.9e-08
    PF13854.1   1 lPppRarhcavvvsgniylyGGksgnddsvsddvyvLs 38 
                  +P +R++h av ++  +y++GG++g  ++ ++d+++++
  MMETSP0890-20130614|34847_1 287 HPGARFCHVAVEYRAALYIFGGYDG--GNRLNDFLRFP 322
                  69**********************6..99999999876 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.7e-09   2.9e-06       2      41 ..      19      57 ..      18      60 .. 0.95
   2 !   17.4   0.0   1.2e-06    0.0021       9      47 .]      76     113 ..      68     113 .. 0.86
   3 !   16.9   0.3   1.7e-06     0.003       1      42 [.     119     158 ..     119     159 .. 0.90
   4 !   26.8   0.0   1.4e-09   2.4e-06       1      43 [.     168     209 ..     168     211 .. 0.95
   5 !   19.3   0.1     3e-07   0.00052       1      41 [.     218     256 ..     218     259 .. 0.95
   6 !   16.7   0.1     2e-06    0.0034       1      33 [.     290     321 ..     290     321 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.7e-09
                 SSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEE CS
   PF01344.20  2 rssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWe 41
                 rs + ++v  +k+ ++GG+dg +n++n+ + Y+ +  +W+
  MMETSP0890-20130614|34847_1 19 RSLHVAAVWRDKLIIFGGYDG-SNRVNDLWLYSFTQEEWS 57
                 999******************.*****************8 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.2e-06
                  EETTEEEEE---BSTTS-TTEEEEEETTTTEEEEECCSS CS
   PF01344.20   9 vldgkiYviGGrdgdtnalnsVerYDpvtntWeklpsmp 47 
                  v +   Y++GG+dg  +++n+   +++ +++W+++ +m+
  MMETSP0890-20130614|34847_1  76 VWGSSFYIFGGFDG-ISRVNDMHEFSLGSHSWSQVRPMN 113
                  566667********.***********************6 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1.7e-06
                  SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEEE CS
   PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWek 42 
                  ar+s++ vv+ + +Y++GG+dg   + ++   ++  t +W++
  MMETSP0890-20130614|34847_1 119 ARHSHAGVVYLDSVYIFGGYDG--AYRSDFHEFNFITSSWCP 158
                  79*******************9..888888888888888876 PP

  == domain 4    score: 26.8 bits;  conditional E-value: 1.4e-09
                  SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEEEE CS
   PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWekl 43 
                  ar+ a++v +  ++Y +GG+dg ++ ln+V ++D     W +l
  MMETSP0890-20130614|34847_1 168 ARYRATCVRVETYMYLFGGHDG-HRHLNDVHVFDINQRRWAEL 209
                  799*******************.*************9999876 PP

  == domain 5    score: 19.3 bits;  conditional E-value: 3e-07
                  SSSCEEEEEETTEEEEE---BSTTS-TTEEEEEETTTTEEE CS
   PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerYDpvtntWe 41 
                  +r s+++ +++ ++Yv+GG++g   a ++ +++ + t  W+
  MMETSP0890-20130614|34847_1 218 PRDSHTAIAHGRCMYVFGGSTG--IAMDDFYVLRLDTANWS 256
                  799******************9..*************9997 PP

  == domain 6    score: 16.7 bits;  conditional E-value: 2e-06
                  SSSCEEEEEETTEEEEE---BSTTS-TTEEEEE CS
   PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVerY 33 
                  ar ++ +v +   +Y++GG+dg +n+ln+  r+
  MMETSP0890-20130614|34847_1 290 ARFCHVAVEYRAALYIFGGYDG-GNRLNDFLRF 321
                  69999*****************.*****98876 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   8.8e-10   1.5e-06       3      50 .]      20      69 ..      18      71 .. 0.84
   2 !   22.7   0.1   4.1e-08     7e-05       5      48 ..      72     114 ..      68     116 .. 0.89
   3 !   20.2   0.4   2.5e-07   0.00043       2      43 ..     120     159 ..     119     171 .. 0.87
   4 !   22.7   0.0   3.9e-08   6.7e-05      10      50 .]     177     219 ..     166     219 .. 0.84
   5 !   19.8   0.1   3.2e-07   0.00055       1      43 [.     218     258 ..     218     261 .. 0.95
   6 !   11.1   0.1   0.00019      0.32       6      33 ..     295     321 ..     290     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 8.8e-10
    PF13964.1  3 aghsavsvggkiyifGGytnsgkylndvlvydpetksWeql..pplp.vpr 50
                   h a+++ +k+ ifGGy++ +++ nd+++y++    W+ +  + +p  pr
  MMETSP0890-20130614|34847_1 20 SLHVAAVWRDKLIIFGGYDG-SNRVNDLWLYSFTQEEWSLVrgGGMPpSPR 69
                 56999***************.8*****************974334443665 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 4.1e-08
    PF13964.1   5 hsavsvggkiyifGGytnsgkylndvlvydpetksWeqlpplpv 48 
                  h   ++g+++yifGG+++  ++ nd++ +++ + sW+q+ p+++
  MMETSP0890-20130614|34847_1  72 HVGLVWGSSFYIFGGFDG-ISRVNDMHEFSLGSHSWSQVRPMNG 114
                  666689***********9.79********************985 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 2.5e-07
    PF13964.1   2 raghsavsvggkiyifGGytnsgkylndvlvydpetksWeql 43 
                  r+ h+ v++ +++yifGGy++   y +d++ ++++t sW ++
  MMETSP0890-20130614|34847_1 120 RHSHAGVVYLDSVYIFGGYDG--AYRSDFHEFNFITSSWCPI 159
                  888888888889********7..7***************976 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 3.9e-08
    PF13964.1  10 vggkiyifGGytnsgkylndvlvydpetksWeqlp...plpvpr 50 
                  v  + y+fGG ++ +++lndv+v+d+  ++W +l    p p+pr
  MMETSP0890-20130614|34847_1 177 VETYMYLFGGHDG-HRHLNDVHVFDINQRRWAELDtdgPAPTPR 219
                  67789*******9.*******************95555899987 PP

  == domain 5    score: 19.8 bits;  conditional E-value: 3.2e-07
    PF13964.1   1 praghsavsvggkiyifGGytnsgkylndvlvydpetksWeql 43 
                  pr  h+a+++g   y+fGG+t+   + +d++v++++t  W+++
  MMETSP0890-20130614|34847_1 218 PRDSHTAIAHGRCMYVFGGSTG--IAMDDFYVLRLDTANWSHV 258
                  6899*****************7..9***************986 PP

  == domain 6    score: 11.1 bits;  conditional E-value: 0.00019
    PF13964.1   6 savsvggkiyifGGytnsgkylndvlvy 33 
                   av +   +yifGGy++ g++lnd+l++
  MMETSP0890-20130614|34847_1 295 VAVEYRAALYIFGGYDG-GNRLNDFLRF 321
                  555555569********.9******998 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   1.2e-08     2e-05       2      45 ..      19      59 ..      18      63 .. 0.94
   2 !   19.2   0.4   4.9e-07   0.00084       1      47 [.      68     111 ..      68     113 .. 0.90
   3 !   18.4   0.1   8.4e-07    0.0014       2      45 ..     120     159 ..     119     163 .. 0.91
   4 !   23.9   0.0   1.5e-08   2.6e-05       1      46 [.     168     210 ..     168     213 .. 0.94
   5 !   18.4   0.1   8.8e-07    0.0015       1      43 [.     218     256 ..     218     259 .. 0.94
   6 !   16.8   0.0   2.8e-06    0.0048       1      32 [.     290     318 ..     290     325 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.2e-08
   PF07646.10  2 ryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeel 45
                 r+ h a+v+++k++++GG+   +g+ + +dl+++ +   +W+ +
  MMETSP0890-20130614|34847_1 19 RSLHVAAVWRDKLIIFGGY---DGSNRVNDLWLYSFTQEEWSLV 59
                 778****************...*******************976 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 4.9e-07
   PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeeltp 47 
                  pr +h   v+g+  y++GG+   +g ++ +d++ + +++++W+ + p
  MMETSP0890-20130614|34847_1  68 PRDRHVGLVWGSSFYIFGGF---DGISRVNDMHEFSLGSHSWSQVRP 111
                  5777888899**********...*******************98866 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 8.4e-07
   PF07646.10   2 ryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeel 45 
                  r++h+ vv+ + +y++GG+    ++ + sd++ +++ + +W ++
  MMETSP0890-20130614|34847_1 120 RHSHAGVVYLDSVYIFGGY----DGAYRSDFHEFNFITSSWCPI 159
                  788888999999*******....******************986 PP

  == domain 4    score: 23.9 bits;  conditional E-value: 1.5e-08
   PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeelt 46 
                  +ry+ ++v ++  +y++GG+   +g + ++d++v+d + ++W+el 
  MMETSP0890-20130614|34847_1 168 ARYRATCVRVETYMYLFGGH---DGHRHLNDVHVFDINQRRWAELD 210
                  59******************...********************985 PP

  == domain 5    score: 18.4 bits;  conditional E-value: 8.8e-07
   PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWe 43 
                  pr +h+a   g ++yv+GG+     + + +d++vl++++  W+
  MMETSP0890-20130614|34847_1 218 PRDSHTAIAHGRCMYVFGGS----TGIAMDDFYVLRLDTANWS 256
                  799*****************....**************99997 PP

  == domain 6    score: 16.8 bits;  conditional E-value: 2.8e-06
   PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdl 32 
                  +r +h av ++  +y++GG+   +g+ +++d+
  MMETSP0890-20130614|34847_1 290 ARFCHVAVEYRAALYIFGGY---DGGNRLNDF 318
                  599*****************...777666666 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.5e-22   2.5e-19       4     109 ..     381     489 ..     378     491 .. 0.92
   2 ?   -0.9   0.0      0.86   1.5e+03      81     108 ..     493     520 ..     489     522 .. 0.81

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.5e-22
                  HHHTT-S--EEEEETTTEEEEE-HHHHHHH-HHHHHHTTTT.....TTTT-SEEEEEETTS-HHHHHHHHHHHCCSEEEC.ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
   PF00651.26   4 lreqgelcDvtlvvgdgkefkahkavLaarSpyFkalftgg.....eieestvseieledvepevfealLefiYtgeleitseenveelLaaadllqiprlkdaceeflke 109
                  l ++   +Dvt+v++dg++++ahk vL+ r pyFka+f +g     ++ est sei ++d    +f  +Lef+Yt++  i+  + +++l++aad++ ++rlk++ce++++ 
  MMETSP0890-20130614|34847_1 381 LVDSPIHSDVTFVLDDGESVYAHK-VLCQRCPYFKAMFGSGestneGFIESTASEIAIPDTRKIIFLHILEFLYTDHCIID-LDIAMDLFQAADRFGVDRLKKICESKMLA 489
                  56677899***************9.7***************8888877788888**************************6.************************99976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.86
                  CCHHHHHHHHHHHHT-HHHHCHHHHHHH CS
   PF00651.26  81 eenveelLaaadllqiprlkdaceeflk 108
                   en+ ++++aad++  ++l+d   +f++
  MMETSP0890-20130614|34847_1 493 VENACSIFHAADRYMAKSLRDRSLSFIL 520
                  5788899***********9998877776 PP

>> PF07707.10  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.75   1.3e+03       2      26 ..     465     489 ..     464     493 .. 0.79
   2 !   19.6   0.0   3.2e-07   0.00055       2      43 ..     497     538 ..     496     546 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.75
   PF07707.10   2 lgilefAeaysleeLkeaakkfilk 26 
                  +++++ A+ +++++Lk+ +++ +l 
  MMETSP0890-20130614|34847_1 465 MDLFQAADRFGVDRLKKICESKMLA 489
                  5788999999999999999887765 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3.2e-07
   PF07707.10   2 lgilefAeaysleeLkeaakkfilknfeevvkseeFleLsle 43 
                  ++i++ A+ y  ++L++++ +fil++f++v++++ F ++  +
  MMETSP0890-20130614|34847_1 497 CSIFHAADRYMAKSLRDRSLSFILHHFDDVTQTPAFEDMGRS 538
                  89**********************************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.07u 0.42s 00:00:01.49 Elapsed: 00:00:00.84
# Mc/sec: 1785.86
//
Query:       MMETSP0890-20130614|34857_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-09   34.7   0.0    1.1e-08   34.6   0.0    1.0  1  PF03602.10 Conserved hypothetical protein 95
  ------ inclusion threshold ------
        0.1   11.4   0.0       0.12   11.2   0.0    1.1  1  PF04378.8  Protein of unknown function (DUF519)


Domain annotation for each model (and alignments):
>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.6e-12   1.1e-08      83     182 ..       3     108 ..       1     109 [. 0.72

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.6e-12
   PF03602.10  83 enlealklee....evavlredaaeallklakkkeefdlvflDPPYakellieellellaekkllkenalivvetese.eelle...epenlelvkekkygetklaly 182
                  +n ++++ ++    +v +   d+a  + ++  +++ fdl  l+PPY++   + +ll+++a+ +llk++a+i +e++ e  +l+    +  +l  +++++yg+t laly
  MMETSP0890-20130614|34857_1   3 RNAQNCGYDNtrflSVCTS-ADNALSVGSRLFADRTFDLLSLTPPYEEVV-YADLLHAVAHTNLLKDDAVIAIEYPVElGSLPAtygDRRQLVGLRNRRYGRTVLALY 108
                  5666676666533222222.333333334446889**************7.6***********************99953444311145678889**********998 PP

>> PF04378.8  Protein of unknown function (DUF519)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.7e-05      0.12     127     167 ..      39      78 ..      16      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
    PF04378.8 127 glvliDPPfEakdeyqrvvealkealkRvaqavvaiWyPik 167
                   l+ + PP+E+   y ++++a++++     +av+ai yP+ 
  MMETSP0890-20130614|34857_1  39 DLLSLTPPYEEV-VYADLLHAVAHTNLLKDDAVIAIEYPVE 78 
                  577899****76.6*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 445.57
//
Query:       MMETSP0890-20130614|34865_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.7   2.2      0.034   13.9   0.2    2.1  2  PF03755.8  YicC-like family, N-terminal region
       0.16    9.9  16.4       0.26    9.2  11.4    1.2  1  PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
       0.16   11.7   0.0       0.16   11.7   0.0    4.9  6  PF04539.11 Sigma-70 region 3
       0.64    8.8   3.0        4.6    6.0   0.0    2.1  2  PF01593.19 Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> PF03755.8  YicC-like family, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.19   6.3e+02     121     147 ..     143     169 ..     136     174 .. 0.68
   2 ?   13.9   0.2   9.9e-06     0.034      54     147 ..     176     269 ..     162     274 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.19
    PF03755.8 121 eedeeeeealeeallealeealeelve 147
                  eed+++ee++ ++++ ++ +ale++++
  MMETSP0890-20130614|34865_1 143 EEDDDDEEEDADLAELLFSSALERFET 169
                  334444444557889999999998875 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 9.9e-06
    PF03755.8  54 krlsRGkvevslrlereeeaekalkvneallkall..ealkelkeel.eaaaelslaellrlpgvleveeeedeeeeealeeallealeealeelve 147
                    ++RG++e+ ++++ +++a+++ + +e  ++ l+  + ++++++e   a ++++++++l+    l+ +e++de+e+e+++++  ++lee ++ ++e
  MMETSP0890-20130614|34865_1 176 TDVERGRLEAAVSFRLASAASNDDDDDEGKAEILVikKICDSFESEHgRAPTPAEVDNILEA---LRNTEDADEDEDEDDDNESDNVLEELISMFKE 269
                  5689************9988777776666666543225666666666555555556665555...55555666666666777778888887777765 PP

>> PF05327.6  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  11.4   7.5e-05      0.26     222     319 ..     107     269 ..     104     270 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 7.5e-05
    PF05327.6 222 lddlddeeeeellaeee.eeeeeelfdlddddseeesvesedeedee................................................................akstkkikelsekLDailellfehleseftseeldeekaenlfetLlslFes 319
                  l+ + d ee++ +++ +  eeeee +d+ddd+ e+++++++dee++                                                                  +s++   ++ +  D+ile+l ++ +   +++e d+++++n++e L+s+F++
  MMETSP0890-20130614|34865_1 107 LETFADGEEDDADDDLDeLEEEEEEDDDDDDEYEDAEEDDDDEEEDAdlaellfssalerfetnngrpatdvergrleaavsfrlasaasndddddegkaeilvikkicdsFESEHGRAPTPAEVDNILEALRNTEDADEDEDEDDDNESDNVLEELISMFKE 269
                  5555333333333333313333333333333333333333333333368999999999999999999999****************************************988889999999***************99999999999*************96 PP

>> PF04539.11  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   5.1e+03      20      31 ..      19      30 ..      16      30 .. 0.80
   2 ?    1.1   0.5     0.093   3.2e+02      30      72 ..      87     129 ..      84     133 .. 0.80
   3 ?   -6.2   6.7         4   1.4e+04      53      75 ..     130     152 ..     128     155 .. 0.74
   4 ?   11.7   0.0   4.8e-05      0.16       3      26 ..     208     231 ..     206     237 .. 0.92
   5 ?    3.0   0.1     0.025        85      33      67 ..     227     261 ..     227     266 .. 0.90
   6 ?    6.9   0.0    0.0015       5.2       7      28 ..     261     282 ..     255     286 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
   PF04539.11 20 ePtpeEiAeelg 31
                 +P+++E+ + lg
  MMETSP0890-20130614|34865_1 19 TPSKQEVSKLLG 30
                 799999998876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.093
   PF04539.11  30 lgiseekvrevleaarepvsldlpvgeeedgelgdlleddeae 72 
                  l+  +++++e   +  ep  l++ +  eed++  dl e +e e
  MMETSP0890-20130614|34865_1  87 LDFALDEYKEFAAKEPEPWQLETFADGEEDDADDDLDELEEEE 129
                  6778899999999999999999999999999999976666333 PP

  == domain 3    score: -6.2 bits;  conditional E-value: 4
   PF04539.11  53 pvgeeedgelgdlleddeaespe 75 
                  ++ +++d+e++d  edd++e ++
  MMETSP0890-20130614|34865_1 130 EEDDDDDDEYEDAEEDDDDEEED 152
                  567899******99999555443 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 4.8e-05
   PF04539.11   3 lnkikraqreLeqelgRePtpeEi 26 
                  +  ik++ +  e e+gR+Ptp+E+
  MMETSP0890-20130614|34865_1 208 ILVIKKICDSFESEHGRAPTPAEV 231
                  5679*******************8 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.025
   PF04539.11  33 seekvrevleaarepvsldlpvgeeedgelgdlle 67 
                  ++++v ++lea r+    d ++ e++d e+  +le
  MMETSP0890-20130614|34865_1 227 TPAEVDNILEALRNTEDADEDEDEDDDNESDNVLE 261
                  6899***********************99999887 PP

  == domain 6    score: 6.9 bits;  conditional E-value: 0.0015
   PF04539.11   7 kraqreLeqelgRePtpeEiAe 28 
                  ++ +     + gR+Pt++Ei +
  MMETSP0890-20130614|34865_1 261 EELISMFKEKNGRDPTEAEIGQ 282
                  55566667899*********87 PP

>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.5     0.011        38     103     196 ..     106     205 ..      60     212 .. 0.64
   2 ?    6.0   0.0    0.0013       4.6     339     387 ..     235     283 ..     225     288 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.011
                  H........HHHHHHHHHHHCCCHHHHHHCHHHHCHCTHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTTTSSTCCHCHHHHTCCCCG CS
   PF01593.19 103 l........sllssllefrrslespeslsqalesglllaepellelalesfssllsaqgflersleslfralldgalgflefensarlallslklndqeddg 196
                           + ++ ++ ++++ e++e     +e  +++++++  e +++  + l+s++ ++++ ++   r+  d   g le + s rla +  +++d ++++
  MMETSP0890-20130614|34865_1 106 QletfadgeEDDADDDLDELEEEEEEDDDDDDEYEDAEEDDDDEEEDADLAELLFSSALERFETNN--GRPATDVERGRLEAAVSFRLASAASNDDDDDEGK 205
                  133344553444444555555566666666666666666666666666666665555555666555..9999999999999999999998888888877665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0013
                  EEEEEEECCCHHHTTS-HHHHHHHHHHHHHHHHHH.SSB--SEEEEEET CS
   PF01593.19 339 llsyvlgdaareleslsdeellervledLrkllgnedvpdpkdtvvtrW 387
                  l ++  +++a+e e+++d+   + vle+L  +++++   dp+++ + +W
  MMETSP0890-20130614|34865_1 235 LEALRNTEDADEDEDEDDDNESDNVLEELISMFKEKNGRDPTEAEIGQW 283
                  5566668899************************988888886555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       948  (0.0693388); expected 273.4 (0.02)
Passed bias filter:                      501  (0.0366442); expected 273.4 (0.02)
Passed Vit filter:                        98  (0.00716793); expected 13.7 (0.001)
Passed Fwd filter:                        46  (0.00336454); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.18u 0.39s 00:00:01.56 Elapsed: 00:00:01.12
# Mc/sec: 676.49
//
Query:       MMETSP0890-20130614|34861_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.6   0.7       0.04   13.6   0.0    1.8  2  PF12670.2 Protein of unknown function (DUF3792)
       0.41   10.3   9.4      0.071   12.7   1.2    2.4  2  PF08595.6 RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF12670.2  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.5     1e+04       6      24 ..     333     351 ..     330     362 .. 0.54
   2 ?   13.6   0.0   5.9e-06      0.04      39      92 ..     438     491 ..     425     499 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.5
    PF12670.2   6 kavlkglllayivtlilll 24 
                  k+++k +++++i +l    
  MMETSP0890-20130614|34861_1 333 KPIVKCVVIITISVLNGKN 351
                  5556666665555554444 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 5.9e-06
    PF12670.2  39 vlsllivvitvlsvflGGfvagkkakskgwlvGllvGllYflilllisllvsge 92 
                   l + i +i+++s+f +G v ++++++    +G+++G+ Y ++++++  + s++
  MMETSP0890-20130614|34861_1 438 FLFACISFIYLCSCFPSGRVLVRHTQQEQAQHGIGTGVNYNALTMAALHFASDG 491
                  55678999********************************99988776665554 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.7     0.031   2.1e+02      65      79 ..      58      72 ..      19      86 .. 0.54
   2 ?   12.7   1.2     1e-05     0.071       8      79 ..     121     203 ..     119     225 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.031
    PF08595.6 65 ededdeeeededeee 79
                 e++d+e++e++d+ e
  MMETSP0890-20130614|34861_1 58 EENDEENDEENDRTE 72
                 222222222222221 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1e-05
    PF08595.6   8 lkkkaelvkegkl.aasskslkekvveYnGserkvlsrkrkkk..........kkepridedenelddededdeeeededeee 79 
                  l+++++  ++++  ++ s+ ++++v e +G +  +   ++ +           + +    +++n++dded+dd+ee+d++ e+
  MMETSP0890-20130614|34861_1 121 LQQASRRASRRASrQQPSNVVENEVAESDGGSNTIAAIRSRRLsaipsgdddsHDQSSRSSSGNDEDDEDDDDDEEDDDQGEH 203
                  56777777788777888999999999999999999997776666777666644444444444444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.46u 0.36s 00:00:01.81 Elapsed: 00:00:01.14
# Mc/sec: 1687.87
//
Query:       MMETSP0890-20130614|34872_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:01.04
# Mc/sec: 1053.01
//
Query:       MMETSP0890-20130614|34883_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-09   35.7   0.0    0.00011   21.7   0.0    2.3  2  PF04571.9 lipin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> PF04571.9  lipin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.8e-09   0.00011      22      49 ..      26      53 ..      15      66 .. 0.89
   2 !   11.9   0.0   8.7e-06      0.12      56      85 ..     113     142 ..     109     146 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 7.8e-09
    PF04571.9 22 atlsGaiDvivveqkdgslkcspfhvRF 49
                 +t + a+D+i v+ +dgsl cs+f v+F
  MMETSP0890-20130614|34883_1 26 STRGAAVDIICVKRNDGSLACSNFAVKF 53
                 678899*********************9 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8.7e-06
    PF04571.9  56 kssekvvdievngkevdlkmklgdsGeafF 85 
                  +++e ++di+vngk++   m+l d+G   F
  MMETSP0890-20130614|34883_1 113 RNEEPFIDIFVNGKKIAAVMRLCDDGYCRF 142
                  567889*******************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      444  (0.0324751); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.60
# Mc/sec: 603.08
//
Query:       MMETSP0890-20130614|34898_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-55  187.5   8.1    2.6e-55  187.2   5.6    1.0  1  PF02628.10 Cytochrome oxidase assembly protein


Domain annotation for each model (and alignments):
>> PF02628.10  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   5.6   1.9e-59   2.6e-55      96     301 ..       2     233 ..       1     234 [. 0.93

  Alignments for each domain:
  == domain 1    score: 187.2 bits;  conditional E-value: 1.9e-59
   PF02628.10  96 srrlklllllllllvllQgllGawtVtsgl................vspyrlaaHlllallllalllllalrlrepr.k.saeavpaakklrllallllvllllqillGalvagldaglacntfplmg......pdlplceldwrnlfenpatvqflHrllavltlllllvlavlllrarrr.kklrrlalll.lallllQvllGiltvllgvplslallHqlgaalllaal 301
                  +++l +++++ll+l++ Qgl+G+w+V+sgl                vspyrla+Hl+lal++++ l++ al++++ + + + ++ ++ ++l  +a+++ +l++++ l+Ga+vag+dag a+ntfp+m       pd++++++++rn+fen+ tvqf Hr la+lt++++++ ++++l + ++ +k ++ a+ +  ++l++Qv+lGi+t+ll vp++la++Hq g++lllaa 
  MMETSP0890-20130614|34898_1   2 PNWLLPRCWGLLGLGATQGLVGWWMVKSGLnietssafgdpnkeirVSPYRLATHLGLALTTYVGLIWSALDVFKAAtNsPFSSTQQLGRLPQFAAVTSMLVFATALSGAFVAGNDAGRAYNTFPKMTddswmpPDMFILTPIYRNFFENTGTVQFDHRCLAALTTAAVITQLMATLPKWNQlTKSTKVATTAtGFALTAQVALGIATLLLYVPIPLAAAHQCGSLLLLAAS 233
                  68999***********************************************************************96368999999**********************************************6669999****************************99997777766666866666666665999999*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.73
# Mc/sec: 896.17
//
Query:       MMETSP0890-20130614|34899_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-37  128.5   0.0    1.8e-37  128.2   0.0    1.1  1  PF03572.13 Peptidase family S41
    3.1e-06   27.1   0.0    7.1e-06   25.9   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    2.1e-05   24.2   0.1    5.9e-05   22.7   0.0    1.8  1  PF13180.1  PDZ domain


Domain annotation for each model (and alignments):
>> PF03572.13  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.0   3.9e-41   1.8e-37       2     168 ..      93     266 ..      92     267 .. 0.90

  Alignments for each domain:
  == domain 1    score: 128.2 bits;  conditional E-value: 3.9e-41
                  ---EE-S--.....-----HHHHHHHHH.TT----EEE-TT-----THHHHHHHHC-B----EEE-----B-SS.....................TT-B----EEE--TT------HHHHHHHH-----EE---.-----------B-.----EE----EEE--TT----TT-----SS- CS
   PF03572.13   2 iGylripsfseekstaeelaealkklkk.knvkglIlDlRnNpGGsldaavelaslflddgtivstrdrigkrd........kkesdkkaske..evrtkkplvvLvnegsaSaseifagalkdngratlvGer.tfGkgsvqsvvel.ndgsalkltiakyltpdgrsiekkgvePdie 168
                  +Gylr+++f++   t++ l  +l++l   k++k++++DlR+N+GG  ++a+++as+fl+ gt v+ +  ++k++        +  +++k+  +   + ++ pl + +++gsaS+se+fagal+dn  a++ G++ +fGkg++q v+ l + +++l +t+a+y+tp ++ +++ g++Pdi 
  MMETSP0890-20130614|34899_1  93 TGYLRLTEFNT--RTDRRLGTILSDLIDdKKAKAIVIDLRGNGGGAFQSAIDAASYFLPTGTPVVDIVEQEKDPgsplrstfR--AKDKQ--PpnHKIYNFPLELWIDRGSASSSEVFAGALRDNCAAVVAGKQtSFGKGLIQAVLGLiQAEGGLIVTVAQYYTPANKPVQGIGISPDIP 266
                  8********77..**************99******************************999888877777777777764321..12222..134789************************************9*************9999**************************97 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.6e-09   7.1e-06      32      77 ..      15      61 ..       4      65 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.6e-09
                 STTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS.EEE CS
   PF00595.19 32 vvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkg.evt 77
                 ++pg++a+++gl+++D I+s++gvdv ++s  +  +++ + +g ++ 
  MMETSP0890-20130614|34899_1 15 PLPGSSAAKAGLSVDDTIISIDGVDVKGLSSFDYLDIVSKVGGnSIN 61
                 689*6666666***************999877766666666655554 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.3e-08   5.9e-05      16      55 ..       9      49 ..       2      77 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.3e-08
    PF13180.1 16 vlvvs.VkessPaakaglkpGDiilkvdgkkvksltdlksl 55
                 ++++s   ++s aakagl ++D+i+++dg++vk l+++++l
  MMETSP0890-20130614|34899_1  9 CRITSpPLPGSSAAKAGLSVDDTIISIDGVDVKGLSSFDYL 49
                 56666677999**********************99998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.75
# Mc/sec: 952.15
//
Query:       MMETSP0890-20130614|34908_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-05   23.7   0.0    3.2e-05   23.5   0.0    1.1  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.3e-09   3.2e-05       3      46 ..      10      53 .]       8      53 .] 0.94

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.3e-09
                 HHH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S- CS
   PF00271.26  3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerG 46
                  +  g++v il+ +   ++r + l +f++g+ + l+at+ a+rG
  MMETSP0890-20130614|34908_1 10 QRIDGHRVGILTPDSDLDQRAKALADFRSGRIDLLLATDLAARG 53
                 56789999***********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      135  (0.0098742); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.39s 00:00:00.67 Elapsed: 00:00:00.70
# Mc/sec: 181.44
//
Query:       MMETSP0890-20130614|34909_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       499  (0.036498); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.33s 00:00:00.71 Elapsed: 00:00:01.18
# Mc/sec: 231.51
//
Query:       MMETSP0890-20130614|34912_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.6   0.2    6.1e-08   32.6   0.1    2.2  1  PF00622.23 SPRY domain


Domain annotation for each model (and alignments):
>> PF00622.23  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   4.4e-12   6.1e-08       3     121 ..      58     158 ..      56     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.4e-12
                  -EEEEEE-TT-S-..EEE--EETTS--------STT-.----EEEECTTEEEE--SS-EEE--SS--SEE-EEE-.S----EEEEECTCT.-.EEEE-S------EE--EE------S-EE CS
   PF00622.23   3 khyfevevddggeshirvGwatkeakrkgeenllgedegswgldlskgskyhavtseetgeklqeegdviGvllD.leggeisFtkngkhlg.iyafrnvefgeklfPavslkagnairln 121
                    y+ev+v++ g    rvG++++   +    +++g++  sw+l++ +     av          e gd+iGv++   e +++sF+ ng+ l+  +  r +++  ++fPavs+ +g+++r  
  MMETSP0890-20130614|34912_1  58 AAYWEVHVEGTGV--FRVGVCRNLD-QDAMRSHIGDENASWALRSED---AGAV----------E-GDIIGVAFGqAELPNLSFFLNGQLLEhGVVNR-IRG--EVFPAVSVDQGAKLRCV 158
                  57**********9..********99.788899999999*****9998...3333..........3.77777776415558************443333.555..7********98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      139  (0.0101668); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.73
# Mc/sec: 597.45
//
Query:       MMETSP0890-20130614|34918_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-16   59.7   3.3    5.1e-16   58.7   0.3    2.6  2  PF00059.16 Lectin C-type domain


Domain annotation for each model (and alignments):
>> PF00059.16  Lectin C-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.3   3.8e-20   5.1e-16       2     108 .]      28     140 ..      27     140 .. 0.88
   2 ?    0.3   0.1     0.056   7.7e+02      64     100 ..     399     440 ..     385     445 .. 0.75

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 3.8e-20
                  EEEHHHHHHHHHHTT-EBS-HSSHHHH....HHHHHHHCHCSSEEEESEEESSTTTCEB..TTT-B-STT...CBSTTCSTSSCCTEEEEEEETTTTTSEEEEETTSEEEEEEEE CS
   PF00059.16   2 sktweeaekaCqkegakLvsiqseeeq....kflkslvkksnssaWiGlsdekkegefvw.tdgssveyt...nwaegepnnkkskedCvelskktegkwndesCesklkyvCek 108
                  s +w++a+  C ++g+ L+ +++ee +    ++l+s  +   + +W+G +d++keg+++w  dgs+v  +   +w+eg+p+n +   dC+ l +  +++w+d+ C   l+y Ce+
  MMETSP0890-20130614|34918_1  28 STNWNRARDSCVSRGGVLAKVRDEESNlelvQLLESRGE-ILEGVWLGAQDRHKEGDWKWvADGSRVLDEsyqKWCEGSPTNANPLTDCMVLLAA-DKCWTDMLCALPLPYACEF 140
                  689************************855555555554.899*****************7788887544466******************9999.79***************96 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.056
                  STT..CBSTTCSTSSCCTEEEEEEETTTT...TSEEEEETTS CS
   PF00059.16  64 eyt..nwaegepnnkkskedCvelskkte...gkwndesCes 100
                  + +   +a+g +n++++ e+C e +++      k + +sC+ 
  MMETSP0890-20130614|34918_1 399 HLAiiDYADGPSNDYSEVEQCDETTDNIVtayEKFEATSCRV 440
                  44444899999999999****999998766677888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.68
# Mc/sec: 2209.58
//
Query:       MMETSP0890-20130614|34930_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       159  (0.0116296); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.88
# Mc/sec: 253.25
//
Query:       MMETSP0890-20130614|34951_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.4   0.1       0.12   12.4   0.0    1.8  2  PF13897.1 Golgi-dynamics membrane-trafficking


Domain annotation for each model (and alignments):
>> PF13897.1  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.078   1.1e+03      51      67 ..      37      53 ..      25      74 .. 0.56
   2 ?   12.4   0.0     9e-06      0.12       2      47 ..      79     123 ..      78     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.078
    PF13897.1 51 vsessdeeeeeeeeeee 67
                  s+ +de e++++++++
  MMETSP0890-20130614|34951_1 37 LSDDHDEPEDDDNRNNN 53
                 44444444444443322 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 9e-06
    PF13897.1   2 grgevvtvrvptheeGkalvWefatddydiGfGvyfewteatsekv 47 
                  ++g+  ++++   ++G  +vW f     di f + f  t++ +++ 
  MMETSP0890-20130614|34951_1  79 KHGKSESIQL-SVPSGYFVVWSFCSKPRDIAFTLIFTATSKAAREY 123
                  5666666665.4699*********************9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      377  (0.0275746); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 461.65
//
Query:       MMETSP0890-20130614|34958_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-14   52.6   0.5    6.2e-14   52.3   0.3    1.1  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.3   4.5e-18   6.2e-14       2     251 .]      12     264 ..      11     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 4.5e-18
                  EEEECE........CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHCHHCTTT-EEEE--------SEEEECTEEEEEEESCGCCEEEEEECTTSS-ECGGCEECCTCEEEEEEEEEECTEEEEEEECHHHCTSSTTSHHHH.HHHHHHHHHHCCHHHHSEEEE---S--BSSGH.................TTTBHHHHHSH..HCBHBCCHHHHCBTT-C--SB--TC-TTTCCCHHB--S--EEBHHHCCCCEEEEECTHHCHS.............SSS CS
   PF03372.18   2 twNvlg.wnarsdrakkldqladllqsedpDvllLQEvdedplsellatglasglglagdgkvggggggdalgggglallskypldksirrtfqldgkagiavprlssknkgdvpvrfrggktlalvntHltpgnrlrqrder.allaeidkladdsrgspvilaGDfNsrpdspd.................kgfrenaadfl..pgdgfddglrallphlllptspgttdtyekageparlDyilvssgwpalvvsgalllpdrgg.............SDH 251
                  ++Nv   +n+  ++      +a++l +    v  ++E++ ++++ ++a   a ++g ++   ++ ++       + +a+l +++    ++++ ++d k +++      + +++       ++tl++++tHl+p++  r+r+e+ ++l+ ++++ ++    p++l+GD+N+ +  ++                 k   +++++    p   + + +r+l+++  +pt p++  t e +  p rlDyil +     +++++++   +                SDH
  MMETSP0890-20130614|34958_1  12 SYNVCEgGNDSLEN-----YFANFLVR--CEVAIINEANGWHVKKKAAVTIAIQYG-YNMELLRTTH------DFDIAVLTRKSSLLERGHLTSTDAKIFHHG----LLHCVI-------NQTLHVFATHLSPHSAFRRRREAsRILELVSSIETQ----PIVLVGDLNTLSPFDSyspnvlrifqsdprlsaKFLVKDNRTIDyePMRILLSVFRDLHSQ--APTVPTALRTDELHAVPMRLDYILMNDCALNFFRYTYDDQAPYYLtinphidnftqraSDH 264
                  67777744444444.....57777777..678888999998777777744444444.2222222222......345*******99999999998888888882....344444.......9******************************99998....5********9998888********9888888885555555555555888889999999888..69***********************777666666666666555557777888888888998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.66
# Mc/sec: 1063.84
//
Query:       MMETSP0890-20130614|34959_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-10   39.4   0.2    6.7e-10   38.2   0.1    1.6  1  PF02893.15 GRAM domain
  ------ inclusion threshold ------
       0.19   11.4   1.8        1.3    8.6   1.6    2.1  2  PF07330.7  Protein of unknown function (DUF1467)


Domain annotation for each model (and alignments):
>> PF02893.15  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   9.9e-14   6.7e-10      17      67 ..     165     213 ..     157     214 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 9.9e-14
   PF02893.15  17 adydCylstskgpvsGrlylTnnrlcFrsdklgdlvyvvviplaeikrvek 67 
                   d++C++++ k++  Grly+T+ ++cF+s+ +g ++ ++ ip + i+ + k
  MMETSP0890-20130614|34959_1 165 RDFSCAIER-KILLHGRLYVTERFICFYSNLFGFEK-KIKIPYSYITCITK 213
                  58*******.**************************.******99998776 PP

>> PF07330.7  Protein of unknown function (DUF1467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.54   3.7e+03      18      35 ..     281     298 ..     280     300 .. 0.82
   2 ?    8.6   1.6    0.0002       1.3       3      28 ..     626     651 ..     625     656 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.54
    PF07330.7  18 lfvvLPfgvrtqaeegev 35 
                  l++ LP+  ++  ++++v
  MMETSP0890-20130614|34959_1 281 LIAALPISNQSDSNNKDV 298
                  7899****9999888776 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0002
    PF07330.7   3 itsalviYfviWwvvlfvvLPfgvrt 28 
                  i s++v+Y + W v+l+v+L + +  
  MMETSP0890-20130614|34959_1 626 IHSVFVVYRISWLVLLLVMLCITLIK 651
                  5799****************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       677  (0.0495173); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:01.12
# Mc/sec: 1469.62
//
Query:       MMETSP0890-20130614|34964_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-70  235.2   0.0    1.2e-69  234.4   0.0    1.4  1  PF03416.14 Peptidase family C54
  ------ inclusion threshold ------
      0.021   13.8   0.4      0.044   12.7   0.3    1.4  1  PF07910.8  Peptidase family C78


Domain annotation for each model (and alignments):
>> PF03416.14  Peptidase family C54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.0   1.8e-73   1.2e-69      11     277 ..      40     351 ..      30     352 .. 0.88

  Alignments for each domain:
  == domain 1    score: 234.4 bits;  conditional E-value: 1.8e-73
   PF03416.14  11 vasriwltYRkdfppieetnlttDigWGCmlRtgQmllaqaLlllhlgrdwrvkeeekeeeeykkilalFeDs..keavfsiHqlvqagkkkkgkkvgeWfgPaavarilkklvkek.....dleglevyvaldgt.vvkedivekvaas....................................................kteekekwkplllliplrLGldkiNevylealkellkleqsvGiiGgkpkqslyfvGfqddkliyLdPhvvqeavevnkkdeslkeetyhckvlkkleleklDPslaigflirdeddfedlkeel 277
                  ++  +w+tYR++fp +e  +++ D+gWGCmlR+ Qml+a aL++ hlg++ r+           +i+++F+D+  +++++siH++v+ g ++ +  +geW+gP  ++++l+ l++ +     d ++l + v+++ + +++ed+  +v+++                                                    +  e+++ k+ l++iplrLGl k+ ++y +al  +l+++qs+G++Gg+p+q+lyf+G   ++li LdPh+vq+a+  n +++s + ++  c  ++k++l+ +DPsla++f++rd++df dl++++
  MMETSP0890-20130614|34964_1  40 ISKIFWFTYRSGFPSMEPCGYSDDAGWGCMLRSCQMLMATALQR-HLGEKRRM-----------DIIQWFNDEpgEKCIYSIHNMVRCGLRY-DMLPGEWYGPGVASHVLRDLCEMHdaaldDAHDLFMTVTSQERpLCEEDVLLSVTKPssaeeetantysletptscdediqhnfdpllrpppsierqkqnaqkrtkakrQRLESPWCKSALIIIPLRLGLAKLDPIYFDALLATLQFPQSLGFVGGRPRQALYFIGSVSKQLIGLDPHIVQPATS-NIFSKS-HLDSLVCLQPRKVHLDAIDPSLALAFYCRDRNDFSDLSRRI 351
                  55567************************************975.67766554...........59*******88899**************.**********************998888778888777766555156666666666559999999999999999999999999999999999999998888777666554444999*******************************************************************987.666665.569**********************************9987 PP

>> PF07910.8  Peptidase family C78
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   6.5e-06     0.044      20      43 ..      62      85 ..      55      98 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.5e-06
    PF07910.8 20 kdkGwgCgYRnlQmllSwllesre 43
                 +d+GwgC  R+ Qml+   l+ + 
  MMETSP0890-20130614|34964_1 62 DDAGWGCMLRSCQMLMATALQRHL 85
                 79*************998887544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       439  (0.0321094); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 2041.70
//
Query:       MMETSP0890-20130614|34974_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       630  (0.0460796); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.55
# Mc/sec: 840.90
//
Query:       MMETSP0890-20130614|34977_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   18.1   0.0     0.0028   18.0   0.0    1.1  1  PF13637.1 Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.061   13.5   0.0      0.067   13.4   0.0    1.1  1  PF12796.2 Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.1e-07    0.0028       6      54 .]      11      61 ..       7      61 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.1e-07
    PF13637.1  6 hyaaisgrlelvklLlekgidinrtdes..GntaLhiAalrgnieilklLl 54
                   aa++g  + ++ +l+ g+ +n+ +e+  G t +h A ++g+++ l  Ll
  MMETSP0890-20130614|34977_1 11 WSAAKDGKDQDIERWLDAGACPNYYNEKdgGLTSVHAATEAGDVRTLTKLL 61
                 56788888888999*******999985555***************998886 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.7e-06     0.067       3      47 ..      12      62 ..       4      63 .] 0.60

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.7e-06
    PF12796.2  3 lAaengnlelvklLlekgadvdl......getpLhlAaeagnleivklLle 47
                  Aa+ g+ + ++  l++ga +++      g t +h+A eag++ ++  Ll+
  MMETSP0890-20130614|34977_1 12 SAAKDGKDQDIERWLDAGACPNYynekdgGLTSVHAATEAGDVRTLTKLLD 62
                 566666666666666666666665443334446666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 243.50
//
Query:       MMETSP0890-20130614|34980_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 396.77
//
Query:       MMETSP0890-20130614|34990_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.043   13.6   0.1    1.6  1  PF05746.10 DALR anticodon binding domain
      0.075   11.8   0.0       0.11   11.2   0.0    1.2  1  PF10475.4  Protein of unknown function N-terminal domain (DUF2450)


Domain annotation for each model (and alignments):
>> PF05746.10  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   6.2e-06     0.043      36      79 ..       6      51 ..       1      69 [. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHHHHHHHHH------THHHHHH..HHHHHHHHHHHHHH- CS
   PF05746.10 36 keLlkalaqfpevleeaaeelephklaey..lyeLaatfhkfYnke 79
                 ++L  +la   ev+e+++e++  +  a++  +++La++f +fYn++
  MMETSP0890-20130614|34990_1  6 EALRTQLAVATEVIERILEHHYDDFAANFhnVEDLANEFDQFYNSV 51
                 67889999999*******998777776654489**********965 PP

>> PF10475.4  Protein of unknown function N-terminal domain (DUF2450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.6e-05      0.11      36      94 ..       4      62 ..       2      67 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.6e-05
    PF10475.4 36 eaeklkeqhdvvskklsqlimek.reefvkgmeeieeiekeLkeaavickngRraLdsak 94
                 e e l++q+ +v+ ++ ++i+e+ +++f+++++++e++ +e  +  + ++++R  + +a+
  MMETSP0890-20130614|34990_1  4 EYEALRTQL-AVATEVIERILEHhYDDFAANFHNVEDLANEFDQFYNSVTQARACVIKAR 62
                 556777777.77888888888762689********************9999998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 640.22
//
Query:       MMETSP0890-20130614|35000_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.8   0.8     0.0041   16.6   0.5    1.5  1  PF13679.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.069   13.1   0.0    2.1  3  PF07757.8 Predicted AdoMet-dependent methyltransferase
      0.082   13.2   0.2       0.23   11.8   0.1    1.9  1  PF11195.3 Protein of unknown function (DUF2829)


Domain annotation for each model (and alignments):
>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   9.1e-07    0.0041       9     135 ..     104     222 ..      93     226 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.1e-07
    PF13679.1   9 laelveklvkeaakeegsltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatpkesvdvviaLHaCdtltdealrlalekeakllvlvpCCy 135
                  ++++ ++++++ +++++ +t+ Dv+ G+g  a  la+   +   +l+v++ d+ ++   +a ++a +    +    +f     a++++ +++ ++++ H Cd+  + +l  a  ++a ++ ++pCC 
  MMETSP0890-20130614|35000_1 104 FLTVERRILQR-KQDSSLQTIEDVATGHGLVAHLLAA---QYYPHLQVTSSDIVRRDSWNAWSMAFANAG-C-PTPQFRLC-DAQHIKLTNTTLLVCVHGCDDVNKIILDKAKVANAPWI-SMPCCL 222
                  44444444444.6778889999999999999999999...334578899999877766666666544442.2.33333333.35566789999************************998.579996 PP

>> PF07757.8  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.6   1.2e+04      39      54 ..      11      26 ..       9      32 .. 0.76
   2 ?   13.1   0.0   1.5e-05     0.069      52      98 ..     113     162 ..      63     168 .. 0.70
   3 ?   -1.3   0.0      0.45   2.1e+03      21      38 ..     235     252 ..     225     259 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.6
    PF07757.8 39 dlaiaaylivlwkktr 54
                 dla +a+    w +++
  MMETSP0890-20130614|35000_1 11 DLAATAFQTSHWANDH 26
                 8888999888887765 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.5e-05
    PF07757.8  52 ktrseeketsfvdvgcgngllvyvlaaegy...kgygidlrkrklwelyp 98 
                  + + + + +++ dv  g gl+ ++laa+ y   +    d+ +r +w+ + 
  MMETSP0890-20130614|35000_1 113 QRKQDSSLQTIEDVATGHGLVAHLLAAQYYphlQVTSSDIVRRDSWNAWS 162
                  3444467999******************993333456799******9875 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.45
    PF07757.8  21 rlvenwvestdplkfvfe 38 
                     + w+  td  +++f 
  MMETSP0890-20130614|35000_1 235 GSRSSWTPLTDDMRYIFL 252
                  555789999******996 PP

>> PF11195.3  Protein of unknown function (DUF2829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     5e-05      0.23      35      67 ..     216     247 ..     144     247 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5e-05
    PF11195.3  35 kaegtnlkslpyiliktaegeafsmWspsasDv 67 
                  ++ +  lk ++yi+++t++g+ +s+W p ++D+
  MMETSP0890-20130614|35000_1 216 ISMPCCLKATNYIDMQTSKGS-RSSWTPLTDDM 247
                  5667778999********877.9*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 1034.62
//
Query:       MMETSP0890-20130614|34999_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-22   80.3   4.9    3.5e-22   78.5   3.4    1.7  1  PF01025.14 GrpE
     0.0047   17.0   0.1     0.0093   16.0   0.0    1.5  1  PF08963.5  Protein of unknown function (DUF1878)
     0.0066   16.0   1.5      0.021   14.4   1.0    1.8  1  PF04508.7  Viral A-type inclusion protein repeat
  ------ inclusion threshold ------
       0.03   14.2   0.8      0.057   13.3   0.6    1.5  1  PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
      0.035   13.9   5.7      0.027   14.2   2.7    1.7  2  PF09486.5  Bacterial type III secretion protein (HrpB7)
      0.083   12.4   0.1       0.17   11.4   0.1    1.4  1  PF08294.6  TIM21
        0.4   10.3   4.5       0.95    9.1   3.1    1.6  1  PF02203.10 Tar ligand binding domain homologue
       0.47    9.2   2.4       0.62    8.8   1.7    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        1.6    7.4   5.8        2.8    6.6   4.0    1.4  1  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   3.4   2.3e-25   3.5e-22       9     165 ..      37     211 ..      25     212 .. 0.81

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 2.3e-25
   PF01025.14   9 eeedeeeeleeeleeleeevkelkdkll...............rllaefenlrkrtekekeeakkyaiekflkelLpvlDnleralkaak.eseeveslleGvemtlkqllkvLekegvekiepe.gekFDpnlheAvstvesdekeegtvvevlqkGYklk.drvlRpAkVkVs 165
                  ee+d  ++l+e+++ele+e++  + +l+               rl+a++e ++++ +   e+  ++ +++ ++++ pvl+ +e a + ++  +e++ ++   ++  ++ l++ ++  g+e ++ e g  F+p+lh+Av+tv +++ +   vv+ l++GYklk + ++RpAk +++
  MMETSP0890-20130614|34999_1  37 EENDPRDALREKIAELENELRTKRTALErakasvddagknglyRLAAQVETYKRNNRGSAERSTESRKAEAFRAFTPVLEGFEAAAEEIQpIDEAEIKMQSDFQELYRALMDKFALMGMESFSVEeGTVFNPELHQAVDTVVAENDDRSIVVQQLRPGYKLKsGAIIRPAKCIIA 211
                  5555555555555555554443333333333333333333334********************************************999544444499*************************99************************************788*****98775 PP

>> PF08963.5  Protein of unknown function (DUF1878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-06    0.0093      56     107 ..      99     152 ..      83     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.1e-06
    PF08963.5  56 elekqkaeGlvlfdkllalfagqlneklevhetieallk..qglfkplmeefis 107
                    e++kae +  f+++l+ f+ + +e  +++e+   +++  q+l+++lm+ f  
  MMETSP0890-20130614|34999_1  99 STESRKAEAFRAFTPVLEGFEAAAEEIQPIDEAEIKMQSdfQELYRALMDKFAL 152
                  57899**************************99888875569********9975 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.0   1.4e-05     0.021       4      21 ..      43      60 ..      43      61 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
    PF04508.7  4 drlRrkIsdLekqLsdcr 21
                 d lR+kI +Le++L+++r
  MMETSP0890-20130614|34999_1 43 DALREKIAELENELRTKR 60
                 789*************98 PP

>> PF10473.4  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   3.8e-05     0.057       2      50 ..      25      73 ..      24      97 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-05
    PF10473.4  2 ekkqlqvlekLkesereadlLkdkvenLErELelseenqelvileaens 50
                 ++ + +  +  ke++   d+L++k+ +LE EL++ ++  e++ +  +++
  MMETSP0890-20130614|34999_1 25 DETTPETISDTKEENDPRDALREKIAELENELRTKRTALERAKASVDDA 73
                 66666777889************************99999988776654 PP

>> PF09486.5  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.7   1.8e-05     0.027      51     143 ..      15     106 ..       3     110 .. 0.77
   2 ?   -1.2   0.1         1   1.5e+03      96      96 ..     133     133 ..     102     182 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-05
    PF09486.5  51 rlaahdarlddlagggasltidaylqlrryrdvlveelaaaeqavaaarqalqakvaela.avrreiarldAqidvyre.radrlrraeeaared 143
                  + ++  ++ dd ++   + ti +  + +  rd+l e++a +e ++   r al++++a ++ a +  + rl Aq++ y+   + +++r  e  + +
  MMETSP0890-20130614|34999_1  15 ETDEVVENGDDETT---PETISDTKEENDPRDALREKIAELENELRTKRTALERAKASVDdAGKNGLYRLAAQVETYKRnNRGSAERSTESRKAE 106
                  55555555556555...6677777777888*****************************7367899***********751566788877765554 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1
    PF09486.5  96 a 96 
                   
  MMETSP0890-20130614|34999_1 133 I 133
                  1 PP

>> PF08294.6  TIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00011      0.17      36     119 ..      21     104 ..      16     115 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
    PF08294.6  36 psgdtkifnrAlekveedeevrsvlgerlkayGeetrrdrWtRnrpivstrkldkeGkehlrmkFhveg..krkkgtvklelkesd 119
                  ++gd ++  + ++  +e+++ r++l e+++ + +e r +r +  r ++s+    k+G  +l    +ve+  ++++g ++  ++ ++
  MMETSP0890-20130614|34999_1  21 ENGDDETTPETISDTKEENDPRDALREKIAELENELRTKRTALERAKASVDDAGKNGLYRLAA--QVETykRNNRGSAERSTESRK 104
                  689999999999********************9999999988888888888888888766655..555532556666655555444 PP

>> PF02203.10  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.1   0.00063      0.95      51     166 ..      46     148 ..      32     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00063
                  HHHHHHHHHHHHHHHHHHHHHHTTTTSTSSCHHHHHH.HHHHHHHHHHHHHHHTS--.-GGGHHHHHHHHHHHHH.HHHHHHHHHHHHH---HHHHHHS-----TTT-------HHH CS
   PF02203.10  51 qaaLaeawasllqaRltLnraalageapdskellara.eeslaqsekawkaYlalpkeaeeeealadelkakykqylksgleeliaaleagdldaffdqptqkmqdlfealtrawea 166
                  ++++ae +++l + R++L ra         k+ +++a ++ l + ++++++Y+  ++ + +e+   ++ ++++++ +   le ++aa e   ++  +d +  kmq++f++l+ra ++
  MMETSP0890-20130614|34999_1  46 REKIAELENELRTKRTALERA---------KASVDDAgKNGLYRLAAQVETYKRNNRGS-AERSTESRKAEAFRA-FTPVLEGFEAAAEE--IQ-PIDEAEIKMQSDFQELYRALMD 148
                  567899999999999999975.........99999999999****************88.888888888888999.65666666665544..44.4577788999999999998765 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.7   0.00041      0.62      54     123 ..      24      94 ..       2     110 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00041
    PF10186.4  54 kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle.asaqlekrraeqlak 123
                  + + + +  +++++ ++ ++ +r++i++l++e++ kr  +e+ k+++++  ++   + a ++++ ++++++
  MMETSP0890-20130614|34999_1  24 DDETTPETISDTKEENDPRDALREKIAELENELRTKRTALERAKASVDDAGKNGLyRLAAQVETYKRNNRG 94 
                  55555666777888888888888888888888888888888888888776666555444444444444444 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.0    0.0018       2.8     109     212 ..      15     125 ..       7     149 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0018
    PF14362.1 109 eIdtelkekqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGt........ggtgvaGkGpvykekkealdaaqaeletlkaqldaaqael 212
                  e d+++++   e + + ++ +++  ++   al+++ia+l++el+++++++++a++ v++  +          ++ ++  +G + ++ ++  ++a ++++ + +  +aa +e+
  MMETSP0890-20130614|34999_1  15 ETDEVVENGDDETTPETISDTKE-ENDPRDALREKIAELENELRTKRTALERAKASVDDAGKNGlyrlaaqvETYKRNNRGSAERSTESRKAEAFRAFTPVLEGFEAAAEEI 125
                  44555555566666666666666.4555555666677777777777777777766666543322355555555555555565555555555555555555555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       859  (0.0628291); expected 273.4 (0.02)
Passed bias filter:                      548  (0.0400819); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.41s 00:00:01.01 Elapsed: 00:00:02.40
# Mc/sec: 232.65
//
Query:       MMETSP0890-20130614|35010_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   18.6   0.1     0.0031   17.6   0.1    1.5  2  PF12766.2  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.043   13.6   0.0      0.097   12.5   0.0    1.6  1  PF01243.15 Pyridoxamine 5'-phosphate oxidase
      0.082   12.3   0.0       0.15   11.5   0.0    1.4  1  PF10590.4  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
       0.12   11.8   0.0       0.19   11.1   0.0    1.3  1  PF02507.10 Photosystem I reaction centre subunit III


Domain annotation for each model (and alignments):
>> PF12766.2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   9.1e-07    0.0031      66      98 ..       2      33 ..       1      35 [. 0.94
   2 ?   -3.1   0.0       2.6     9e+03      54      69 ..      73      88 ..      61      97 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 9.1e-07
    PF12766.2 66 KvkqlessnsaveavfwfketreQfRikGkafv 98
                 K+ ql+ +n+++e+v+   ++++Q Ri+Gkaf+
  MMETSP0890-20130614|35010_1  2 KIVQLK-KNARCEMVWSDLQQNRQVRIRGKAFI 33
                 999***.7***********************97 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.6
    PF12766.2 54 dvltfttDvrseKvkq 69
                  +  f t +  eK+ q
  MMETSP0890-20130614|35010_1 73 ALARFETESSFEKTPQ 88
                 4444555555555544 PP

>> PF01243.15  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.8e-05     0.097      53      82 ..       3      31 ..       1      34 [. 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.8e-05
                 HHHHHH--EEEEEEEETTGGTEEEEEEEEE CS
   PF01243.15 53 vrnleenpkvsllfvddeelgrqvrieGra 82
                   +l++n ++ ++  d   ++rqvri+G+a
  MMETSP0890-20130614|35010_1  3 IVQLKKNARCEMVWSDLQ-QNRQVRIRGKA 31
                 5689**************.*********98 PP

>> PF10590.4  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.15       4      32 ..      96     125 ..      93     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.2e-05
    PF10590.4   4 yrvvPesiEFWqgrt.sRLHdRlrytreee 32 
                    v Pes EF+ g+      dR++y  +++
  MMETSP0890-20130614|35010_1  96 IIVQPESYEFYIGGHlGYVNDRFLYVLDDN 125
                  5799*******9886489*******98744 PP

>> PF02507.10  Photosystem I reaction centre subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05      0.19     107     150 ..      99     145 ..      90     149 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.6e-05
   PF02507.10 107 iPgllflyiaGwiGwvGrsyliavkkekk..ptekeiii.dvplalk 150
                   P  + +yi G++G+v  ++l  + ++++   + k+iii d pl  k
  MMETSP0890-20130614|35010_1  99 QPESYEFYIGGHLGYVNDRFLYVLDDNDSssNDGKDIIItDKPLTFK 145
                  5666778************9999988776224568887746777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:01.32
# Mc/sec: 275.94
//
Query:       MMETSP0890-20130614|35007_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-11   40.3  34.9     0.0019   17.5   0.6    7.2  6  PF00612.22 IQ calmodulin-binding motif
  ------ inclusion threshold ------
      0.037   13.2   0.6      0.095   11.9   0.4    1.6  1  PF05778.7  Apolipoprotein CIII (Apo-CIII)


Domain annotation for each model (and alignments):
>> PF00612.22  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.05   3.5e+02       2      15 ..     153     166 ..     152     171 .. 0.85
   2 !   17.5   0.6   2.7e-07    0.0019       2      18 ..     179     195 ..     178     197 .. 0.92
   3 !   15.9   0.2   9.3e-07    0.0064       3      20 ..     234     251 ..     232     252 .. 0.94
   4 !    7.2   0.4   0.00056       3.8       3      17 ..     259     273 ..     257     274 .. 0.82
   5 !   12.4   0.3   1.2e-05     0.084       6      19 ..     288     301 ..     286     302 .. 0.92
   6 !    6.5   1.2   0.00099       6.7       7      18 ..     316     327 ..     310     328 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.05
                  HHHHHHHHHHHHHH CS
   PF00612.22   2 kaaikIQaawRgyl 15 
                  kaa ++ + +R+y+
  MMETSP0890-20130614|35007_1 153 KAASVLVSSYRRYR 166
                  89***********7 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2.7e-07
                  HHHHHHHHHHHHHHHHC CS
   PF00612.22   2 kaaikIQaawRgylaRk 18 
                  + aikIQaa R++ aRk
  MMETSP0890-20130614|35007_1 179 RNAIKIQAAARAFIARK 195
                  78**************9 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 9.3e-07
                  HHHHHHHHHHHHHHHCHC CS
   PF00612.22   3 aaikIQaawRgylaRkry 20 
                  aa+ IQ+++Rg+l R+++
  MMETSP0890-20130614|35007_1 234 AALAIQKHVRGFLGRCQF 251
                  89**************98 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.00056
                  HHHHHHHHHHHHHHH CS
   PF00612.22   3 aaikIQaawRgylaR 17 
                  a+ +IQ++wRg  +R
  MMETSP0890-20130614|35007_1 259 AVNRIQRVWRGSCVR 273
                  7889*******6655 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHCH CS
   PF00612.22   6 kIQaawRgylaRkr 19 
                  k+Qa+ Rgyl Rkr
  MMETSP0890-20130614|35007_1 288 KMQAQARGYLSRKR 301
                  89***********7 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.00099
                  HHHHHHHHHHHC CS
   PF00612.22   7 IQaawRgylaRk 18 
                  I +++Rgy+aRk
  MMETSP0890-20130614|35007_1 316 ISRVYRGYRARK 327
                  889********9 PP

>> PF05778.7  Apolipoprotein CIII (Apo-CIII)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   1.4e-05     0.095      17      41 ..     482     506 ..     474     511 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
                  HHGGGHHHHHHGGGGGGGHHHH--- CS
    PF05778.7  17 qAtktakdaLssvqESqvAqqARgW 41 
                  + ++t +daL +++  q+A+q R W
  MMETSP0890-20130614|35007_1 482 RSSRTQHDALQKIKRQQIADQKRKW 506
                  679********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       806  (0.0589526); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.69
# Mc/sec: 2365.10
//
Query:       MMETSP0890-20130614|35032_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-39  133.7   2.5    1.5e-18   66.7   1.0    3.6  3  PF12796.2  Ankyrin repeats (3 copies)
    5.6e-38  126.7  12.4    1.8e-08   33.6   0.6    6.4  7  PF00023.25 Ankyrin repeat
    2.5e-33  113.7   3.7    1.6e-11   44.2   0.2    4.6  5  PF13637.1  Ankyrin repeats (many copies)
    1.7e-32  110.5  13.8    2.9e-11   43.1   0.1    6.0  6  PF13857.1  Ankyrin repeats (many copies)
    1.9e-27   92.4   4.4    1.8e-05   24.3   0.1    6.3  6  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   1.7e-18   4.8e-15       1      83 [.       7      93 ..       7      99 .. 0.92
   2 !   66.7   1.0   5.5e-22   1.5e-18       2      89 .]      74     163 ..      73     163 .. 0.95
   3 !   17.3   0.0   1.5e-06     0.004      22      64 ..     163     205 ..     159     210 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.7e-18
    PF12796.2  1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekga 83
                 L +Aa +g++ +v +L+e ga++ l    + tpL +Aa++g +++v+lLl+   d++    +g t+ h+A+ +g++e++ +  ++++
  MMETSP0890-20130614|35032_1  7 LWIAAFHGRARVVSKLIERGANPLLpnndNATPLYAAAQNGAVDCVSLLLAVDVDPCVPRRDGTTAVHVAAATGRVEILIMFRTADI 93
                 679*********************99877777**********************************************988777654 PP

  == domain 2    score: 66.7 bits;  conditional E-value: 5.5e-22
    PF12796.2   2 hlAaengnlelvklLlekgadvdl..getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadvnlrd 89 
                  h+Aa +g++e++ ++  +  ++    g tp ++Aa+ag++ +++ Ll +gad+ ak+k+g t+Lh+A++ gh+ +++lLl++gad +++d
  MMETSP0890-20130614|35032_1  74 HVAAATGRVEILIMFRTADIKLSDahGVTPFFCAAAAGHVTTCQHLLRRGADIHAKTKKGTTALHAAASGGHTHVIHLLLSNGADASAKD 163
                  9**********999999888777678999********************************************************99886 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 1.5e-06
    PF12796.2  22 dvdlgetpLhlAaeagnleivklLleag.advnakdkegntpLh 64 
                  d d g+tpL+l a+ag +++ ++L+e+g a++ a+ ++g+tp +
  MMETSP0890-20130614|35032_1 163 DTD-GRTPLFLSACAGFVDASRCLMEQGgASMTARANDGRTPVI 205
                  344.89********************8758999999*****976 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   8.4e-11   2.3e-07       2      33 .]       3      34 ..       2      34 .. 0.95
   2 !   18.1   0.1   5.4e-07    0.0015       2      28 ..      36      62 ..      35      65 .. 0.85
   3 !    9.1   0.0   0.00039       1.1       1      18 [.      68      85 ..      68      95 .. 0.90
   4 !   24.7   0.0   4.4e-09   1.2e-05       1      33 []      99     131 ..      99     131 .. 0.97
   5 !   33.6   0.6   6.6e-12   1.8e-08       2      32 ..     133     163 ..     132     164 .. 0.96
   6 !   14.4   0.0   8.1e-06     0.022       1      31 [.     165     196 ..     165     198 .. 0.89
   7 ?   -3.0   0.0       2.7   7.3e+03       1       5 [.     199     203 ..     199     204 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 8.4e-11
                 SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33
                 G+T+L +Aa++g+++vv+ L+++GA++ + ++
  MMETSP0890-20130614|35032_1  3 GRTALWIAAFHGRARVVSKLIERGANPLLPNN 34
                 9**************************98876 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5.4e-07
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdl 28
                   TPL  Aa++g +++v+lLl    d+
  MMETSP0890-20130614|35032_1 36 NATPLYAAAQNGAVDCVSLLLAVDVDP 62
                 67*******************866555 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00039
                 TSCBHHHHHHHTTHHHHH CS
   PF00023.25  1 dGfTPLHlAalrgnlevv 18
                 dG T+ H+Aa  g++e++
  MMETSP0890-20130614|35032_1 68 DGTTAVHVAAATGRVEIL 85
                 89************9997 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 4.4e-09
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                  +G TP  +Aa  g++  ++ Ll +GAd++a+++
  MMETSP0890-20130614|35032_1  99 HGVTPFFCAAAAGHVTTCQHLLRRGADIHAKTK 131
                  699***************************996 PP

  == domain 5    score: 33.6 bits;  conditional E-value: 6.6e-12
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  G T+LH Aa+ g++ v+ lLls+GAd  a+d
  MMETSP0890-20130614|35032_1 133 GTTALHAAASGGHTHVIHLLLSNGADASAKD 163
                  89**************************998 PP

  == domain 6    score: 14.4 bits;  conditional E-value: 8.1e-06
                  TSCBHHHHHHHTTHHHHHHHHHH.TTSSTTHB CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLls.qGAdlnaq 31 
                  dG+TPL l a+ g ++  ++L +  GA+ +a+
  MMETSP0890-20130614|35032_1 165 DGRTPLFLSACAGFVDASRCLMEqGGASMTAR 196
                  8**********************777777776 PP

  == domain 7    score: -3.0 bits;  conditional E-value: 2.7
                  TSCBH CS
   PF00023.25   1 dGfTP 5  
                  dG+TP
  MMETSP0890-20130614|35032_1 199 DGRTP 203
                  8***9 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1   1.8e-13     5e-10       1      54 []       3      56 ..       3      56 .. 0.98
   2 !   17.1   0.0   1.9e-06    0.0052      26      53 ..      61      88 ..      57      89 .. 0.82
   3 !   44.2   0.2   5.8e-15   1.6e-11       1      54 []     100     153 ..     100     153 .. 0.97
   4 !   16.2   0.0   3.7e-06      0.01      16      53 ..     148     185 ..     147     186 .. 0.91
   5 ?   -1.4   0.0       1.2   3.3e+03      32      39 ..     198     205 ..     188     207 .. 0.62

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.8e-13
    PF13637.1  1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54
                 g+taL  aa +gr ++v  L+e+g+++   ++++ t+L+ Aa++g ++++ lLl
  MMETSP0890-20130614|35032_1  3 GRTALWIAAFHGRARVVSKLIERGANPLLPNNDNATPLYAAAQNGAVDCVSLLL 56
                 69**************************************************98 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.9e-06
    PF13637.1 26 dinrtdesGntaLhiAalrgnieilklL 53
                 d+    ++G+ta+h+Aa +g++eil ++
  MMETSP0890-20130614|35032_1 61 DPCVPRRDGTTAVHVAAATGRVEILIMF 88
                 44444689*****************987 PP

  == domain 3    score: 44.2 bits;  conditional E-value: 5.8e-15
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  g+t+++ aa++g++ ++++Ll +g+di+++ ++G+taLh Aa++g+ ++++lLl
  MMETSP0890-20130614|35032_1 100 GVTPFFCAAAAGHVTTCQHLLRRGADIHAKTKKGTTALHAAASGGHTHVIHLLL 153
                  579******************99*****************************98 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 3.7e-06
    PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  +++lLl++g+d  ++d +G+t+L + a +g++++ ++L
  MMETSP0890-20130614|35032_1 148 VIHLLLSNGADASAKDTDGRTPLFLSACAGFVDASRCL 185
                  689**********************9988999888777 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 1.2
    PF13637.1  32 esGntaLh 39 
                  ++G+t+++
  MMETSP0890-20130614|35032_1 198 NDGRTPVI 205
                  45777776 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.3e-08   3.6e-05      16      56 .]       3      43 ..       1      43 [. 0.95
   2 !   16.0   0.2   3.5e-06    0.0095      15      36 ..      35      56 ..      32      62 .. 0.81
   3 !   22.0   0.0   4.4e-08   0.00012       7      56 .]      60     107 ..      57     107 .. 0.93
   4 !   25.6   0.0   3.2e-09   8.8e-06       7      53 ..      91     137 ..      88     137 .. 0.94
   5 !   43.1   0.1   1.1e-14   2.9e-11       1      54 [.     119     171 ..     119     173 .. 0.97
   6 !   17.7   0.0   9.9e-07    0.0027       2      53 ..     153     204 ..     153     206 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.3e-08
    PF13857.1 16 gntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56
                 g+t+L +Aa +g++ vv +L+++ga++ l ++d+ t+l  A
  MMETSP0890-20130614|35032_1  3 GRTALWIAAFHGRARVVSKLIERGANPLLPNNDNATPLYAA 43
                 78************************************877 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 3.5e-06
    PF13857.1 15 ggntpLhlAakggalevvrlLl 36
                  + tpL+ Aa +ga+++v lLl
  MMETSP0890-20130614|35032_1 35 DNATPLYAAAQNGAVDCVSLLL 56
                 233******************9 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 4.4e-08
    PF13857.1   7 advnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  +d++  ++ g+t+ h+Aa  g++e+++++    ad++l d++g t++ +A
  MMETSP0890-20130614|35032_1  60 VDPCVPRRDGTTAVHVAAATGRVEILIMFR--TADIKLSDAHGVTPFFCA 107
                  789999************************..***********9998776 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 3.2e-09
    PF13857.1   7 advnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                  ad+  +d +g+tp+  Aa +g+++ ++ Ll++gad++++++ g tal
  MMETSP0890-20130614|35032_1  91 ADIKLSDAHGVTPFFCAAAAGHVTTCQHLLRRGADIHAKTKKGTTAL 137
                  67778999*************************************98 PP

  == domain 5    score: 43.1 bits;  conditional E-value: 1.1e-14
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                  Ll++g ad++a  ++g+t+Lh Aa+gg+++v+ lLl +gad+ ++d+dg+t+l 
  MMETSP0890-20130614|35032_1 119 LLRRG-ADIHAKTKKGTTALHAAASGGHTHVIHLLLSNGADASAKDTDGRTPLF 171
                  89999.**********************************************95 PP

  == domain 6    score: 17.7 bits;  conditional E-value: 9.9e-07
    PF13857.1   2 lehgpadvnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltal 53 
                  l++g ad+ a d+ g+tpL l a +g +++ r L  + ga+ ++r +dg+t++
  MMETSP0890-20130614|35032_1 153 LSNG-ADASAKDTDGRTPLFLSACAGFVDASRCLMeQGGASMTARANDGRTPV 204
                  6789.78888888899************************************8 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.9e-07    0.0008       2      28 ..       3      29 ..       2      31 .. 0.95
   2 !   11.3   0.0   0.00011       0.3       4      27 ..      38      61 ..      34      64 .. 0.86
   3 !    7.3   0.0    0.0022         6       1      18 [.      68      85 ..      68      93 .. 0.90
   4 !   22.2   0.0   3.2e-08   8.9e-05       1      30 []      99     128 ..      99     128 .. 0.95
   5 !   24.3   0.1   6.7e-09   1.8e-05       2      28 ..     133     159 ..     132     161 .. 0.93
   6 ?    4.0   0.0     0.025        70       1      16 [.     165     180 ..     165     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.9e-07
    PF13606.1  2 GnTpLhlAasngrielveaLlengadi 28
                 G+T+L +Aa +gr  +v+ L+e+ga++
  MMETSP0890-20130614|35032_1  3 GRTALWIAAFHGRARVVSKLIERGANP 29
                 9************************97 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00011
    PF13606.1  4 TpLhlAasngrielveaLlengad 27
                 TpL+ Aa+ng ++ v++Ll   +d
  MMETSP0890-20130614|35032_1 38 TPLYAAAQNGAVDCVSLLLAVDVD 61
                 9*****************976665 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0022
    PF13606.1  1 nGnTpLhlAasngrielv 18
                 +G T+ h+Aa  gr+e++
  MMETSP0890-20130614|35032_1 68 DGTTAVHVAAATGRVEIL 85
                 699***********9986 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 3.2e-08
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                  +G Tp+++Aa  g++  +++Ll++gadi+a
  MMETSP0890-20130614|35032_1  99 HGVTPFFCAAAAGHVTTCQHLLRRGADIHA 128
                  589************************985 PP

  == domain 5    score: 24.3 bits;  conditional E-value: 6.7e-09
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G T+Lh Aas g++ ++++Ll+ngad 
  MMETSP0890-20130614|35032_1 133 GTTALHAAASGGHTHVIHLLLSNGADA 159
                  88***********************96 PP

  == domain 6    score: 4.0 bits;  conditional E-value: 0.025
    PF13606.1   1 nGnTpLhlAasngrie 16 
                  +G+TpL+l a  g ++
  MMETSP0890-20130614|35032_1 165 DGRTPLFLSACAGFVD 180
                  79*****988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      164  (0.0119953); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 753.64
//
Query:       MMETSP0890-20130614|35037_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-17   62.3   0.9    6.1e-17   61.6   0.6    1.4  1  PF13370.1  4Fe-4S single cluster domain
    9.9e-08   32.3   0.4      2e-07   31.3   0.3    1.6  1  PF13459.1  4Fe-4S single cluster domain
    9.6e-06   25.2   0.9    1.9e-05   24.2   0.6    1.4  1  PF00753.22 Metallo-beta-lactamase superfamily
     0.0049   16.5   0.4     0.0084   15.7   0.3    1.4  1  PF06902.6  Protein of unknown function (DUF1271)


Domain annotation for each model (and alignments):
>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.6   1.8e-20   6.1e-17       1      58 []      32      86 ..      32      86 .. 0.96

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 1.8e-20
    PF13370.1  1 VDrdtCiaCgaCreaAPdvFeyddeggaavvldqpegeeekedaeeAlesCPvesIkv 58
                 VD  +Ci+C++Cr++AP++F++   +g+++v++qp++++   +a++A+++CP+ sI++
  MMETSP0890-20130614|35037_1 32 VD-ASCIDCDTCRWMAPKIFDRA--QGKSYVHEQPRNDNTWMEAQRAAAACPTGSIRT 86
                 88.9******************9..57*****************************85 PP

>> PF13459.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.3     6e-11     2e-07       2      64 ..      31      85 ..      30      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 6e-11
    PF13459.1  2 fvDrdtCigcgaCvelapdvfeldedgkarvlvddqegegevpddleedaqeAadaCPvdaIh 64
                 +vD   Ci c+ C   ap++f+ + +gk++v+       ++  d+   +aq+Aa+aCP+++I+
  MMETSP0890-20130614|35037_1 31 YVD-ASCIDCDTCRWMAPKIFDRA-QGKSYVHE------QPRNDNTWMEAQRAAAACPTGSIR 85
                 678.89*****************9.79999994......3556999***************97 PP

>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.6   5.7e-09   1.9e-05       9     175 ..     131     291 ..     125     307 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 5.7e-09
                  EEEECSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHHCSEEEEEEEEECEEEEEEEEEEEEEEEETTCCSSTEEEEEE.....TTTTEEEETTTSSSTTSSSSSBG..HHHHCCCCSEETCHHHH CS
   PF00753.22   9 yLvegdggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDHiGGlpglleafpapvvygaeearallrlalrdelkrkkpvrvllvdvdeevgdgilggrrllfvtghpghgpghgvvyl.....gggkilftGDllfvagtgrlgld..ltlrgakvrdpslwekl 175
                  yLv +++ ++++D    +++   +    +++g  ++ a++lTH +   +    +++++fp+ +++ + + + + +++++ e       +++   + ee++   ++++  +++++ pgh+ gh+++++     gg+++lftGD+l   +++    +    +r+a +  +s+++++
  MMETSP0890-20130614|35037_1 131 YLVSNNNLTFMVDSPRYNSKLADR----IEKGHGTPSALLLTHID--DVADHKKWKDRFPDLIRVIHRADAFGADRWPYIE-------TRDCELILEEDQSAWDILNNQVKAIHVPGHSRGHLAFRVdaettGGDSVLFTGDHLAYSARLGRLHGmsRYGRDAIEQAHSIAQLA 291
                  999999***************996....9*************976..5*****************************9985.......68899999999999999999999999999999999999999**************9866666555545544555555555555555 PP

>> PF06902.6  Protein of unknown function (DUF1271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   2.5e-06    0.0084      13      60 ..      34      85 ..      29      89 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.5e-06
    PF06902.6 13 elCihagnCvkglpevFdlkrk.pwi..kpdeast.eeiievverCPSGALs 60
                 + Ci    C  ++p++Fd  +   ++  +p++ +t  e++++++ CP G ++
  MMETSP0890-20130614|35037_1 34 ASCIDCDTCRWMAPKIFDRAQGkSYVheQPRNDNTwMEAQRAAAACPTGSIR 85
                 67****************987549995534333334999**********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.86
# Mc/sec: 902.81
//
Query:       MMETSP0890-20130614|35039_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.7   0.0      0.059   12.0   0.0    1.3  1  PF05089.7 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain


Domain annotation for each model (and alignments):
>> PF05089.7  Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-06     0.059      34     101 ..      49     116 ..      40     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-06
                  -EEE-----HHHHHHHHTT----HHHHHHH------HHHHHTTS---------TTHHHHHHH---HHH CS
    PF05089.7  34 nlpLaivgqeavwrkvlkelglsdeeikeflsgpaflaWqrmgnlegwggplpkswlekqeeLqkkil 101
                  + +La++  e + ++  +el+ + +ei++ ++g+a  a   ++ l+  ++ l ++ +++qeeLq  ++
  MMETSP0890-20130614|35039_1  49 QNKLATATVERIRTAAANELECTLSEIRASVAGQAQAAHRALKTLADERDKLAQARISDQEELQAALT 116
                  678999*********************************************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1745  (0.127633); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.41s 00:00:01.34 Elapsed: 00:00:01.00
# Mc/sec: 1140.67
//
Query:       MMETSP0890-20130614|35049_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 190.82
//
Query:       MMETSP0890-20130614|35047_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-15   55.8   0.0    6.4e-15   55.5   0.0    1.2  1  PF13460.1  NADH(P)-binding
    0.00061   19.0   0.0    0.00082   18.5   0.0    1.2  1  PF05368.8  NmrA-like family
  ------ inclusion threshold ------
      0.064   12.5   0.0       0.27   10.5   0.0    1.9  1  PF01370.16 NAD dependent epimerase/dehydratase family
       0.15   11.6   0.0       0.22   11.1   0.0    1.3  1  PF07799.7  Protein of unknown function (DUF1643)


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.9e-18   6.4e-15      24     150 ..       5     131 ..       2     163 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.9e-18
    PF13460.1  24 evtalvRnpsklpe..ssgvtivkkDlfdledlaealagvdvvvdafgarped......regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelleasgldwtivrPaalfeae 150
                  ev +++Rnp+ ++   ss+v++v++D+ +  dl + ++++d+v++++ga  +d       e  ++++ a+k+ g++r+ +vs   l  d+++       ++f++yl+ k++ae+++++   d +i+rP+ +++ +
  MMETSP0890-20130614|35047_1   5 EVISVSRNPKPASTtwSSQVRYVRGDALTD-DLVAIFRSADAVISCVGALGSDddarnnGETNERIALAAKQVGASRFAYVSVHPLVSDAAS-------DIFPAYLAGKKRAEQAIRSNFPDACIIRPTLIYGGD 131
                  899*******8888999**********998.8***************999996678877888999999999999999998888877777666.......9******************************99876 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.4e-07   0.00082      56     133 ..      34     115 ..      11     134 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.4e-07
                  HHHHHHH----EEEE---TT-.....--TTT---HHHHHHHH---SEEEEEE---GG.G-.------TTTHHHHHHHHHHHH- CS
    PF05368.8  56 eslvealkgvdvvfsvttfve.....skeiedgkklvdAakeaGvkrfvpSelgndndrsnaeePavplfdeKaeveeyiral 133
                  + lv++++ +d+v+s +++       +++ e+  +++ Aak++G  rf + ++ + +    a++   + ++ K + e++ir+ 
  MMETSP0890-20130614|35047_1  34 DDLVAIFRSADAVISCVGALGsdddaRNNGETNERIALAAKQVGASRFAYVSVHPLVSDA-ASDIFPAYLAGKKRAEQAIRSN 115
                  45899*************887888888999999********************9999544.55557788999*******9985 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.8e-05      0.27      24     115 ..       5      85 ..       2     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.8e-05
                  EEEEESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---HHHCCCSHHHHHHHHT---HHHHHHHHHHTT.EEEEEE CS
   PF01370.16  24 evvnlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesgvdassedpadfieanvegtlnlleaarkagvkrflfas 115
                  ev+ ++r+++ + + t++ +v+ v++d +  d+l ++f+++  daVi +++  g         d +++n e + ++  aa++ g+ rf ++s
  MMETSP0890-20130614|35047_1   5 EVISVSRNPKPA-STTWSSQVRYVRGDAL-TDDLVAIFRSA--DAVISCVGALG-------SDDDARNNGETNERIALAAKQVGASRFAYVS 85 
                  555666666666.45555699********.778889*****..********975.......4677889999999999999999999998887 PP

>> PF07799.7  Protein of unknown function (DUF1643)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.4e-05      0.22      10      86 ..      42     118 ..      31     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.4e-05
    PF07799.7  10 eekktllfiglNPstadeeedDpTlrrlirfarawgygglvvvNlfalrstspkelkkakdpvgpendaallkaake 86 
                  ++ +++  +g   s +d++++ +T +r+   a++ g +++  v + +l+s  ++++  a    +++ ++a+++ + +
  MMETSP0890-20130614|35047_1  42 SADAVISCVGALGSDDDARNNGETNERIALAAKQVGASRFAYVSVHPLVSDAASDIFPAYLAGKKRAEQAIRSNFPD 118
                  5667788999999**************************************99999985555556677777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.59
# Mc/sec: 877.31
//
Query:       MMETSP0890-20130614|35053_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       788  (0.057636); expected 273.4 (0.02)
Passed bias filter:                      640  (0.046811); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:00.83
# Mc/sec: 155.91
//
Query:       MMETSP0890-20130614|35078_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.2    9.3   0.7        0.2    9.3   0.5    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   1.5e-05       0.2      23      67 ..       8      52 ..       3      56 .] 0.90

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14 23 qrkfvnevrrldeverklrkleseikkakielkdekekpdvpesk 67
                 +++f ++  r + ver+lr  +s ik++++e+kd ++ +d+++++
  MMETSP0890-20130614|35078_1  8 SLQFAQPKARSEIVERELRLSKSAIKHKEAEQKDAEKAEDIRKEN 52
                 67899999**************************99999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       767  (0.0561001); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 194.49
//
Query:       MMETSP0890-20130614|35073_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-15   54.9   0.0    3.3e-06   27.3   0.0    2.3  2  PF08241.7  Methyltransferase domain
    5.4e-10   39.4   0.0    3.1e-09   37.0   0.0    2.1  1  PF13649.1  Methyltransferase domain
    5.3e-09   36.3   0.0    3.1e-08   33.8   0.0    2.0  1  PF08242.7  Methyltransferase domain
      1e-07   32.4   0.1    1.8e-07   31.6   0.1    1.5  1  PF12847.2  Methyltransferase domain
    2.3e-06   27.1   0.0    0.00013   21.4   0.0    2.2  2  PF13847.1  Methyltransferase domain
    5.6e-06   26.2   0.0    1.3e-05   25.0   0.0    1.5  1  PF13659.1  Methyltransferase domain
    4.7e-05   23.0   0.0    8.1e-05   22.2   0.0    1.4  1  PF13489.1  Methyltransferase domain
    0.00013   21.0   0.0     0.0002   20.5   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
    0.00013   21.4   0.0     0.0002   20.8   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
     0.0002   20.8   0.0     0.0048   16.2   0.0    2.2  2  PF01555.13 DNA methylase
     0.0026   16.7   0.0      0.015   14.2   0.0    1.9  2  PF02353.15 Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.013   14.4   0.0       0.31   10.0   0.0    2.6  3  PF01209.13 ubiE/COQ5 methyltransferase family
      0.065   12.1   0.0       0.11   11.4   0.0    1.3  1  PF02390.12 Putative methyltransferase
      0.088   12.0   0.0       0.15   11.3   0.0    1.4  1  PF05175.9  Methyltransferase small domain
       0.15   11.5   0.0       0.29   10.5   0.0    1.5  1  PF09445.5  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.6e-09   3.3e-06       1      65 [.      49     113 ..      49     119 .. 0.78
   2 !   25.5   0.0   1.3e-08   1.2e-05      34      91 ..     127     197 ..     116     201 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 3.6e-09
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeel.pfednsfDvvv 65 
                  Ld+GcG+gl  +al++  +++++g+D+s  ml+ a er+ + +    + d +e+ +++d+  D+++
  MMETSP0890-20130614|35073_1  49 LDIGCGSGLSGAALENV-GHTWIGCDISRDMLRIASERNIQYDDIPDENDEYEVeDLPDEEDDAIM 113
                  8****************.******************999887544333333333355666667666 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.3e-08
    PF08241.7  34 takerlkeegle.lvvad.aeelpfednsfDvvvssevlehl...........edpekalkeiaRvLkpgG 91 
                   ak+r++++    lv+ d    lpf+d++fD+ +s+++l++l           ++++++++ ++R+Lk   
  MMETSP0890-20130614|35073_1 127 AAKRRKTNQIAAeLVQHDmGLGLPFRDGTFDAAISVSALQWLcydnsseqsapKRLARFFASLYRCLKRSS 197
                  45555555544475555548899*********************************************865 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.4e-12   3.1e-09       1      99 [.      48     195 ..      48     197 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 3.4e-12
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelak.............................................erlsskglkvkfvqada.ralpfeegefdlvvc........aglslehlspkqlealleeiarvlkp 99 
                  +ld+GCGsG +++al +       +  ig Dis ++l+ a                                              +r +++++ ++ vq+d    lpf++g+fd+ ++        + +s e+  pk l ++++++ r+lk+
  MMETSP0890-20130614|35073_1  48 VLDIGCGSGLSGAALENVG-----HTWIGCDISRDMLRIASerniqyddipdendeyevedlpdeeddaimmeeesqseesdipaaKRRKTNQIAAELVQHDMgLGLPFRDGTFDAAISvsalqwlcYDNSSEQSAPKRLARFFASLYRCLKR 195
                  79*************9774.....9************666566666666666666666666666666666666666666666666666667889*********999*************8888877655666689999999999999999987 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   3.4e-11   3.1e-08       1      95 [.      49     195 ..      49     198 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 3.4e-11
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg...........................................ssfDvvvasnvlhhl...........kdirevldnirklLkp 95 
                  L+iGcG+G    al++   + + +g+Dis++++  a e+  ++++   +n ++e++dl d++                                             ++fD++++ ++l++l           k + +++++++++Lk 
  MMETSP0890-20130614|35073_1  49 LDIGCGSGLSGAALENV--GHTWIGCDISRDMLRIASERNIQYDDIPDENDEYEVEDLPDEEDDaimmeeesqseesdipaakrrktnqiaaelvqhdmglglpfrdGTFDAAISVSALQWLcydnsseqsapKRLARFFASLYRCLKR 195
                  8********99999999..99**********************99999999999999998888899*********************************************************99999999988888999999999985 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1     2e-10   1.8e-07       5      78 ..      48     163 ..      44     229 .. 0.64

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2e-10
    PF12847.2   5 ilDlGcGtGslslelarlrpgakvvgvDpseeslelarena..................................ksldleeriellqgdakeelsller.................................fDavllkg 78 
                  +lD+GcG+G+++++l +   g + +g D+s+++l++a e+                                   +                       +                                 fDa++   
  MMETSP0890-20130614|35073_1  48 VLDIGCGSGLSGAALEN--VGHTWIGCDISRDMLRIASERNiqyddipdendeyevedlpdeeddaimmeeesqsE-----------------------EsdipaakrrktnqiaaelvqhdmglglpfrdgtFDAAISVS 163
                  6****************..*******************99876655554444444433333222222332222220.......................133333344455555555555555555555555777777655 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-07   0.00013       7      53 ..      48      89 ..      43     113 .. 0.79
   2 ?    3.8   0.0     0.038        35      44     107 ..     127     200 ..     120     250 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-07
    PF13847.1  7 vlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgf 53
                 vlD+GCG+G  + +l  ++  g + +G Dis +++  A er  + ++
  MMETSP0890-20130614|35073_1 48 VLDIGCGSGLSGAALE-NV--GHTWIGCDISRDMLRIASER--NIQY 89
                 8***************.55..668**************994..3333 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.038
    PF13847.1  44 AkeraqklgfenveFiqgdiee.leklle.esfDlvisnevl...........naladpqkvlkeiervlkpggrli 107
                  A +r++ +++  +e  q d+   l+  +   +fD  is ++l            a + ++ ++ ++ r+lk  +r  
  MMETSP0890-20130614|35073_1 127 AAKRRKTNQIA-AELVQHDMGLgLP--FRdGTFDAAISVSALqwlcydnsseqSAPKRLARFFASLYRCLKRSSRAA 200
                  56667888887.99***********..999*********99976663333322222222233335555555444444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.4e-08   1.3e-05       3     112 ..      47     200 ..      45     203 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.4e-08
    PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaa......rnlaragl...........................................aervrvrqgdlrdlaellragsfdlvvtnpPy....gpragaraalrdlydafleaaarllkpgGvlv 112
                   vld+gcGsG   +a+   + +  +g+++++  +++a+                                                         +  ++++q d+     ++r+g fd+ ++         ++++++ a+++l ++f++ ++r+lk++ +++
  MMETSP0890-20130614|35073_1  47 LVLDIGCGSGLSGAALENVG-HTWIGCDISRDMLRIASerniqyD------DipdendeyevedlpdeeddaimmeeesqseesdipaakrrktnQIAAELVQHDMGLGL-PFRDGTFDAAISVSALqwlcYDNSSEQSAPKRL-ARFFASLYRCLKRSSRAA 200
                  69*********999888888.***********9999994333330......23555555555666666666666666666666666666666654334789999997777.7********999766666643445555555555.599999999999998876 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   8.9e-08   8.1e-05      20     109 ..      42     196 ..      25     222 .. 0.61

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 8.9e-08
    PF13489.1  20 lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigk.......................................akqaqksqfdeedaaepag................................kfdlivarevlehvp...dpe.........ellrqiaellkpg 109
                    ++  vLDiGcG+G   + l+  g+  +g D+s+ +  +                                       +                 +                                +fd  ++   l ++    +           +++++++++lk  
  MMETSP0890-20130614|35073_1  42 PGERRLVLDIGCGSGLSGAALENVGHTWIGCDISRDMLRIaserniqyddipdendeyevedlpdeeddaimmeeesqsE-----------------EsdipaakrrktnqiaaelvqhdmglglpfrdgTFDAAISVSALQWLCydnS-SeqsapkrlaRFFASLYRCLKRS 196
                  355668*********999999***************99999999888777776665555555554444432222222220.................0222222233333333333333344444444448888888888888764321.12444444446666666666655 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.1e-07    0.0002     151     229 ..      34     112 ..      29     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.1e-07
    PF06325.8 151 clealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkva.keNaelNkveaklevallkelpkekadvi 229
                  c+e+l+    e++ vlD+G+GSG+   a   +g+ + ++ Di    +++a ++N+++ ++ ++ + +  ++lp+e+ d i
  MMETSP0890-20130614|35073_1  34 CIELLNIPPGERRLVLDIGCGSGLSGAALENVGH-TWIGCDISRDMLRIAsERNIQYDDIPDENDEYEVEDLPDEEDDAI 112
                  9999999999999**********77766667776.678*****9999987256******999776678888988888877 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.2e-07    0.0002      32     123 ..       7      92 ..       3     102 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.2e-07
                  GGS-GGGGGGTTSSS-EE-----EE--HHHHHHHHHHTT--TT-E..EEEE------HHHHHHTTSSEEE...EE-SB---HH.HHHHHHHHTT- CS
   PF01135.14  32 efvpesfkekaYedaplsigynatiSaphmvalalellelkkgar..vLevGsGsGyltavlarlvgekgrvvsierikelve.eakrnlkkldl 123
                  ef ++  + k Y+ ++  i+ ++ iS      +++ell++ +g+r  vL++G+GsG   a l + vg++   ++ + ++++ + +++rn++ +d+
  MMETSP0890-20130614|35073_1   7 EFYDA-KEAKKYTSSSRIINIQKEISD-----RCIELLNIPPGERrlVLDIGCGSGLSGAALEN-VGHTW--IGCDISRDMLRiASERNIQYDDI 92 
                  55555.345778888888888888876.....799*******998779************9976.67777..89998887665167888887765 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.3e-06    0.0048     183     230 ..      33      83 ..      12      84 .. 0.87
   2 ?    2.4   0.0     0.088        80      28      77 ..     175     224 ..     156     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.3e-06
                  HHHHHHS--...--EEEETT-----HHHHHHH---EEEEEESSTTHHHHHH CS
   PF01555.13 183 rlIklstkk...gdivlDpFaGSGtTavaakelgrkfiGieieeeyvelae 230
                  r+I+l+  +     +vlD  +GSG  ++a ++ g  +iG++i++  +++a 
  MMETSP0890-20130614|35073_1  33 RCIELLNIPpgeRRLVLDIGCGSGLSGAALENVGHTWIGCDISRDMLRIAS 83 
                  677666666666789*****************************9999875 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.088
                  -SS----HHHHHHHHHHHB-----EEE---------.HHHHHHHHH--.-E CS
   PF01555.13  28 yeeyleflekvlkevrrvLkddgsifiniddseikk.elkaladeifggff 77 
                   +   ++l ++++ ++r Lk +  + +++  ++ ++  l+a a+ ++g f 
  MMETSP0890-20130614|35073_1 175 EQSAPKRLARFFASLYRCLKRSSRAALQFYPENDTQaSLIASAAAKAG-FA 224
                  5555678999999**************999999887434444444444.43 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05     0.015      45     109 ..      25      91 ..      15     115 .. 0.79
   2 ?    0.0   0.0      0.35   3.2e+02     127     166 ..     155     203 ..     150     227 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHHHTT------E..EEE-------HHHHHHHHH--EEE--BS-HHHHHHHHHH.HHCS- CS
   PF02353.15  45 eAqlaKldlileklelkpGmt..lLdiGcGWGslvrraverydvkvvglTlSkeqaklakqr.vdeld 109
                  + q++  d+ +e l++ pG++  +LdiGcG G l   a e+ +   +g  +S++  + a +r ++  d
  MMETSP0890-20130614|35073_1  25 NIQKEISDRCIELLNIPPGERrlVLDIGCGSG-LSGAALENVGHTWIGCDISRDMLRIASERnIQYDD 91 
                  5688889999*********976689*****98.678899999************99988776244444 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.35
                  --SEEEE---GGGT.........--TCHHHHHHHHHHCS-----EEEEE CS
   PF02353.15 127 kvdrvvsvgafehv.........gkenydtffkklkkllkedGllllht 166
                   +d+ +sv a++ +           +++++ff+ l++ lk+  + +l+ 
  MMETSP0890-20130614|35073_1 155 TFDAAISVSALQWLcydnsseqsAPKRLARFFASLYRCLKRSSRAALQF 203
                  56666666666665555555555789999********999988777765 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00034      0.31      49      93 ..      46      87 ..      12     116 .. 0.74
   2 ?    1.1   0.0      0.17   1.6e+02      93     119 ..     131     158 ..     121     166 .. 0.70
   3 ?   -1.4   0.0         1   9.2e+02     188     213 ..     190     219 ..     178     228 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00034
   PF01209.13 49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklk 93
                 + vlD+ +G+g   ++l ++vg+  + +++Di+ +mL+++ ++  
  MMETSP0890-20130614|35073_1 46 RLVLDIGCGSGLSGAAL-ENVGH--TWIGCDISRDMLRIASERNI 87
                 3699******9777766.55665..579************99865 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.17
   PF01209.13  93 keegkinieflqan.aeeLpfeddsfDv 119
                  +++ +i  e++q + +  Lpf d++fD 
  MMETSP0890-20130614|35073_1 131 RKTNQIAAELVQHDmGLGLPFRDGTFDA 158
                  444555666776542789*********6 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1
   PF01209.13 188 yryLvesira....fPdqetlkeliedaGf 213
                  yr L+ s ra    +P+++t ++li  a  
  MMETSP0890-20130614|35073_1 190 YRCLKRSSRAalqfYPENDTQASLIASAAA 219
                  666666655333338999999999987654 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.11      19      61 ..      44      84 ..       9      94 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
                 GB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHH CS
   PF02390.12 19 eqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlk 61
                 e +lvl+IG+GsG  l   A +n   +++G +i++++++ + +
  MMETSP0890-20130614|35073_1 44 ERRLVLDIGCGSG--LSGAALENVGHTWIGCDISRDMLRIASE 84
                 3449*********..778899*************998876655 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.15      31      72 ..      44      83 ..      32     114 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
                 ------B-------HHHHHHHH-TT----EEESBHHHHHHHH CS
    PF05175.9 31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesak 72
                 +++ vlD+GcG G+ gaal + + +     +Di++  +++a 
  MMETSP0890-20130614|35073_1 44 ERRLVLDIGCGSGLSGAALENVGHT--WIGCDISRDMLRIAS 83
                 55669********999998887766..778888888887654 PP

>> PF09445.5  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00032      0.29       2      43 ..      46      88 ..      45      99 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00032
    PF09445.5  2 evvlDlfaGaGGnviqfanvfdkviaieinlsklklaq.hNae 43
                 ++vlD+ +G+G    +++nv+++ i+++i+++ l++a  +N +
  MMETSP0890-20130614|35073_1 46 RLVLDIGCGSGLSGAALENVGHTWIGCDISRDMLRIASeRNIQ 88
                 789******************************9988614544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.96
# Mc/sec: 686.46
//
Query:       MMETSP0890-20130614|35091_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.4   0.1      0.035   14.1   0.0    1.2  1  PF01386.14 Ribosomal L25p family


Domain annotation for each model (and alignments):
>> PF01386.14  Ribosomal L25p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-06     0.035       8      51 ..      27      71 ..      24      88 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-06
   PF01386.14  8 evgkgaarrlRregkvPAviYgkgkepvsisvdekeleklle.ke 51
                 +++++ a+r+ +egkvP v Y k  e  +i++ +++ +++ +  e
  MMETSP0890-20130614|35091_1 27 DLEEKRAKRMEEEGKVPHVPYDKWAEDPTIEFAQRQYKRMTKlGE 71
                 5678999******************************99997333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       642  (0.0469573); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 260.09
//
Query:       MMETSP0890-20130614|35094_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   15.1   1.0      0.044   13.8   0.7    1.6  1  PF05190.13 MutS family domain IV
       0.07   13.7   0.8       0.07   13.7   0.6    2.7  4  PF07704.6  Rv0623-like transcription factor


Domain annotation for each model (and alignments):
>> PF05190.13  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.7   6.4e-06     0.044       4      67 ..       4      68 ..       2      70 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.4e-06
                 HHHHHHHHHHHHHHHHHHHHHCCCCCH---TTSEEE--S----EE..EE-TTSTTTT..SEEEEE- CS
   PF05190.13  4 eeLdelrrkleeleselkellekererlgikslkvgynkklgyyl..evtrseakkvpkdfirlqt 67
                 ee+d++r++ +++ s+l ++ ++er rl +  l+++ + ++ +++  +v+  +++  +k+++++q+
  MMETSP0890-20130614|35094_1  4 EEIDQIREIGKNIVSSLLKERRRERTRLAL-LLECDEEIVDEFLIdfHVKALQTDLREKRYELRQN 68
                 89****************************.*************7335777776666779998885 PP

>> PF07704.6  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.8   1.2e+04      37      50 ..      21      34 ..      16      42 .. 0.63
   2 ?   -3.1   0.0       1.8   1.2e+04      39      50 ..     104     115 ..      83     128 .. 0.59
   3 ?   -1.4   0.0      0.52   3.6e+03      45      61 ..     196     211 ..     193     229 .. 0.63
   4 ?   13.7   0.6     1e-05      0.07      14      51 ..     230     267 ..     219     281 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.8
    PF07704.6 37 Lerrrrkkrlverl 50
                 L++rrr++++++ l
  MMETSP0890-20130614|35094_1 21 LKERRRERTRLALL 34
                 56666666665555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.8
    PF07704.6  39 rrrrkkrlverl 50 
                   ++++++ +e++
  MMETSP0890-20130614|35094_1 104 NKEEAATALEAM 115
                  333444444444 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.52
    PF07704.6  45 rlverlaaivrrkaaar 61 
                  ++ve++ ai  r+aaa+
  MMETSP0890-20130614|35094_1 196 DHVETIIAI-ARAAAAE 211
                  678899999.3333332 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 1e-05
    PF07704.6  14 arelaaltgeskteAvreAleerLerrrrkkrlverla 51 
                  ar+l + t+  + +A r Ale+rL+ +rr  ++v  l 
  MMETSP0890-20130614|35094_1 230 ARRLERQTNSPQLTAARNALERRLASDRRHNDVVHNLS 267
                  899**********************9999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       636  (0.0465184); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.66
# Mc/sec: 1121.93
//
Query:       MMETSP0890-20130614|35099_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.5   2.4      0.098   11.8   0.4    1.7  2  PF12795.2 Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.14     2e+03      78      93 ..      54      69 ..      32      77 .. 0.59
   2 ?   11.8   0.4   7.2e-06     0.098      10      92 ..     102     186 ..      96     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.14
    PF12795.2 78 lslsqLeqelaqtssq 93
                  +l+q  q+l + +s+
  MMETSP0890-20130614|35099_1 54 PPLTQAPQQLREDNSS 69
                 5555555555544444 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 7.2e-06
    PF12795.2  10 kkntpeqkaliqdLeqalnfldeikkskqkadqyqkiiddapkelrelrqelealksa..eeavkqelanlslsqLeqelaqtss 92 
                  ++++   ka++++L +  n l+  +++ ++    q i+   pk  r+++ ele + +a    +  ++l++l++ qL q + ++++
  MMETSP0890-20130614|35099_1 102 QSSSGGMKAIQKTLSALFNVLSSENRTPARPHSQQGIVTATPKIKRSIQSELEDEDNAtaVIEGTSKLNELDIVQLAQVVSRADQ 186
                  56677889***********************************************666554555556666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.65
# Mc/sec: 962.23
//
Query:       MMETSP0890-20130614|35110_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 630.01
//
Query:       MMETSP0890-20130614|35108_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-41  140.2   0.3    6.9e-41  140.0   0.2    1.0  1  PF00648.16 Calpain family cysteine protease
  ------ inclusion threshold ------
       0.18   11.1   6.1        3.3    7.1   0.0    2.4  2  PF09083.5  Domain of unknown function (DUF1923)


Domain annotation for each model (and alignments):
>> PF00648.16  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.2     1e-44   6.9e-41     102     295 ..       3     228 ..       1     231 [. 0.89

  Alignments for each domain:
  == domain 1    score: 140.0 bits;  conditional E-value: 1e-44
                  EEEE-S-EEE..----BSSSBE----B-HHHHHHHHHHHH---GGGG----TTHHHCTT----EEEEETTS--T................................THHHHHHHHHH---BB--B---SSG..GGTT-BTTTS-BSS---EE---EEEEB---EEEEEEEE------------STTSGGGGGS-HHHHH...HHTTSS-.---EEEEHHHHHHH-CEEEEE CS
   PF00648.16 102 dvvvddllPt..kdgelvfvksaerkefWsallekayaklnGsyealkgGsttealedltGgvaeslelkkaps..............................ednlakilakllerasllgasidtssa..vdeeaktakglvkghaysvtgvkevelkgekvklirlrnPWGeveWkGaWsdesseWsevdeeeka...elqlkveedGefWmsfedflrefsrleic 295
                   +vvdd++Pt    g+ +f++    +e+W+ lleka+ak  Gsy+++++G+t+ a+e ltG    +++l++++                               +d ++k+l  + ++a+++ga ++ ++    +    t+ g+v ghay++ +v e +     v+l++lrnPWG  eWkG+Wsd+s eW++  +  +a   + ++   +dG f+m ++dfl++f+++++c
  MMETSP0890-20130614|35108_1   3 SIVVDDRVPTsaSTGKPLFSQ-PAGNEVWVLLLEKAFAKFTGSYANIEAGHTVWAFEALTGDAVVTYQLQEKNGqkwehlsmkpkkdktnkravglyhsgrffdKDSMFKLLCSYDRHAAVMGAGSRGTDDtlSQGRGDTSSGIVAGHAYTIKAVAEHHG----VRLLQLRNPWGGWEWKGKWSDNSAEWRKKPQVAQAfgfKQEKDSCDDGLFFMEWDDFLNHFNHIDVC 228
                  68********666799****9.6799*******************************************999989****************************999*****************999988763356677899************9998777....9**************************76555544211334444569******************** PP

>> PF09083.5  Domain of unknown function (DUF1923)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00048       3.3       3      22 ..      57      77 ..      55      96 .. 0.88
   2 ?    3.5   2.9    0.0066        45      38      49 ..     172     183 ..     168     192 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00048
    PF09083.5  3 fenlttkdlvmysy.eknGqk 22
                 fe lt   +v y   eknGqk
  MMETSP0890-20130614|35108_1 57 FEALTGDAVVTYQLqEKNGQK 77
                 9***********8549****9 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0066
    PF09083.5  38 GGrvwnGkwsde 49 
                  GG  w Gkwsd+
  MMETSP0890-20130614|35108_1 172 GGWEWKGKWSDN 183
                  8999*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 1136.34
//
Query:       MMETSP0890-20130614|35122_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-07   29.2   0.0    8.3e-07   28.9   0.0    1.2  1  PF13532.1 2OG-Fe(II) oxygenase superfamily
     0.0045   16.1   0.0     0.0054   15.9   0.0    1.2  1  PF12851.2 Oxygenase domain of the 2OGFeDO superfamily
     0.0057   17.0   0.0      0.044   14.1   0.0    2.0  1  PF13640.1 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.068   12.3   0.0      0.097   11.7   0.0    1.2  1  PF12915.2 Protein of unknown function (DUF3833)


Domain annotation for each model (and alignments):
>> PF13532.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.4e-10   8.3e-07     102     189 ..      37     114 ..       7     115 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.4e-10
    PF13532.1 102 fYregarmglHqDkeesdleapivSlSLGdsalflfggasredeiikilLesGdllvmggesrlayHgvprikkgtapelksrRinlT 189
                  +Y ++ +m+ H D++  ++ + +v lS+  +++f + +       ++++L++G++lv++ +   + Hgv ri  + + +l+++Ri+l 
  MMETSP0890-20130614|35122_1  37 VYGPKGKMASHLDSSVNKKPKFVVILSFANPCIFNVNK-------TQVELSPGSALVFDAA--NILHGVERILSS-SLSLGGGRISLI 114
                  699************888*****************888.......79***********876..678********6.567******995 PP

>> PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-06    0.0054     121     167 ..      66     116 ..      13     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.6e-06
    PF12851.2 121 dpdig...gvavapthgsvlilcakkelHattpvkspn.rnhptRislvfy 167
                  +p+i    ++ v   +gs l+++a  +lH++  + s+     + Risl+f+
  MMETSP0890-20130614|35122_1  66 NPCIFnvnKTQVELSPGSALVFDAANILHGVERILSSSlSLGGGRISLIFF 116
                  5666511156799********************99854145689******9 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.3e-05     0.044       4      94 ..      36     112 ..      33     116 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
    PF13640.1   4 nrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpv.....gaqgrrla 94 
                   +ygp g +  H D+s +++ ++ ++l + +p          +     ++ ++ +ve     + pg++++F+ +++lH+v+ +     + +g r++
  MMETSP0890-20130614|35122_1  36 VVYGPKGKMASHLDSSVNKKPKFVVILSFANPC---------I-----FNVNKTQVE-----LSPGSALVFDAANILHGVERIlssslSLGGGRIS 112
                  578888888888888765555555554444344.........2.....223345566.....9******************997666655555555 PP

>> PF12915.2  Protein of unknown function (DUF3833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05     0.097      17      52 ..      14      49 ..       2      57 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
    PF12915.2 17 yaeeepkldleeffdGklkaeGvvqdrsgkvtrrFt 52
                 +++++ k++l++  +++l+++Gvv++++gk+ ++ +
  MMETSP0890-20130614|35122_1 14 ANQSQDKFELSRIANNELTCQGVVYGPKGKMASHLD 49
                 478899************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:00.66
# Mc/sec: 570.04
//
Query:       MMETSP0890-20130614|35124_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.46s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 312.74
//
Query:       MMETSP0890-20130614|35125_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-14   52.5   0.0      9e-14   50.8   0.0    1.8  2  PF13242.1  HAD-hyrolase-like
    0.00031   20.9   0.0     0.0005   20.2   0.0    1.3  1  PF13419.1  Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.024   13.9   0.0    1.3  1  PF09419.5  Mitochondrial PGP phosphatase
      0.032   14.6   0.0      0.068   13.5   0.0    1.4  1  PF00702.21 haloacid dehalogenase-like hydrolase
       0.11   11.4   0.0       0.15   11.0   0.0    1.1  1  PF02091.10 Glycyl-tRNA synthetase alpha subunit


Domain annotation for each model (and alignments):
>> PF13242.1  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.69   1.9e+03      19      45 ..      48      73 ..      26      77 .. 0.73
   2 !   50.8   0.0   3.3e-17     9e-14       2      74 ..     156     229 ..     155     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.69
                 GGTTTEEEE---.HHHHHHHHH---EE CS
    PF13242.1 19 appsevvmiGDslatDieaAnaaGirs 45
                   +++v+  G   ++D+   n aG++s
  MMETSP0890-20130614|35125_1 48 PSARRVFCFGNG-DDDVDYINSAGLTS 73
                 347788888988.89998888888877 PP

  == domain 2    score: 50.8 bits;  conditional E-value: 3.3e-17
                  ----STHHHHHHH---....-GG.TTTEEEE---.HHHHHHHHH---EE----------TT---TTTT-S---S---- CS
    PF13242.1   2 lgKPnpgmydkalevl....gap.psevvmiGDslatDieaAnaaGirsilVltGvsreedlklakakpdyvvddlee 74 
                  +gKP+p++y ++le l      +  s++  iGDsl +D+++An++Gi+si+V++G++ +e      ++ ++++++ e+
  MMETSP0890-20130614|35125_1 156 IGKPYPTIYVQILEALkkigI-NeTSHIAAIGDSLFHDVLGANKIGIDSIFVTGGIHCDELN---VPQGKHIPPHPED 229
                  79*********9999966642.35899*******************************9653...4778888776655 PP

>> PF13419.1  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.8e-07    0.0005     123     176 .]     147     206 ..     136     206 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.8e-07
    PF13419.1 123 vftsddvga.rKPdpeayekvlerl...gvkp.eeilfidDsl.edveaAraaGirtvhv 176
                  +++s+++ +  KP p +y ++le l   g++  ++i  i+Dsl +dv  A+++Gi++++v
  MMETSP0890-20130614|35125_1 147 TYFSGRAICiGKPYPTIYVQILEALkkiGINEtSHIAAIGDSLfHDVLGANKIGIDSIFV 206
                  56777777758***************999966599**********************987 PP

>> PF09419.5  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.6e-06     0.024     120     167 ..     164     210 ..     145     211 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.6e-06
    PF09419.5 120 aeevleyfkekkvvtkadeiavvgDRllTdvlmanmmGslsvwlregv 167
                    ++le +k+   +++++ ia +gD l+ dvl an++G  s++++ g+
  MMETSP0890-20130614|35125_1 164 YVQILEALKKI-GINETSHIAAIGDSLFHDVLGANKIGIDSIFVTGGI 210
                  55677777554.89************************9999888876 PP

>> PF00702.21  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.068     130     203 ..      89     199 ..      83     200 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.5e-05
                  HHHHHTTC.EEEEESSCHHHHHHHHHHTTC.SEEEEHHH................................TTSHHHHHHHHHHHTS...-GG.GEEEEESSC.TTHHHHHHT CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx................................xxxxxxxxxxxxxxxx...xxx.xxxxxxxxx.xxxxxxxxx RF
   PF00702.21 130 asLkaagi.vvlltgdnpetaeaiakqagi.dslvfaev................................kPepklfvaaieeLqi...dpg.evamvGDgv.nDapalaaA 203
                  ++L ++   +  + gd  +   +ia++ ++    ++a+                                 kP p ++v+++e+L+    ++   +a++GD++  D+ ++ + 
  MMETSP0890-20130614|35125_1  89 QTLGEKEApLSFINGDECDNILRIASERKLpM--IVANPdllrpdsdlspmpgqlanryqtyfsgraicigKPYPTIYVQILEALKKigiNETsHIAAIGDSLfHDVLGANKI 199
                  56666666666677777777777777777631..3333334555555555555556666666666688899*************77555544448********9999988776 PP

>> PF02091.10  Glycyl-tRNA synthetase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.4e-05      0.15      63     125 ..     139     201 ..     110     211 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.4e-05
   PF02091.10  63 Genpnrlqkyyqfqvvl..kpspdniqelyleslkalGidllehdirfvednwesptlGawGlGw 125
                  G+  nr q+y+  + +   kp p  + ++ le+lk +Gi+ ++h i  + d     +lGa  +G 
  MMETSP0890-20130614|35125_1 139 GQLANRYQTYFSGRAICigKPYPTIYVQI-LEALKKIGINETSH-IAAIGDSLFHDVLGANKIGI 201
                  7889******9877654348888766665.8**********999.88999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 889.56
//
Query:       MMETSP0890-20130614|35142_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 236.60
//
Query:       MMETSP0890-20130614|35152_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-32  112.0   0.0    2.1e-32  111.9   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   1.5e-36   2.1e-32     365     459 ..       4      97 ..       1     100 [] 0.96

  Alignments for each domain:
  == domain 1    score: 111.9 bits;  conditional E-value: 1.5e-36
                  GGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTTS-B---TTTEE--BSSHHHHHHTEEE CS
   PF00171.17 365 iaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaealpfgGvkqSglGreggkegleeytev 459
                   + eEiFGPV+++++f++++ea++laN+++y+L a++ t+dl+ra+r+  +l+aG vw N+++ ++++a p+gG+++Sg+Gre+g e+ ++yt+ 
  MMETSP0890-20130614|35152_1   4 AFVEEIFGPVVTLTPFSTDQEALDLANSNRYALGASILTSDLNRAHRLLPHLNAGIVWANTHHRNSPDA-PWGGFGDSGVGRENGLEAHHHYTQP 97 
                  5779*****************************************************************.***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 460.84
//
Query:       MMETSP0890-20130614|35158_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 316.66
//
Query:       MMETSP0890-20130614|35178_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055   13.1   0.1      0.063   12.9   0.1    1.1  1  PF12012.3 Domain of unknown function (DUF3504)


Domain annotation for each model (and alignments):
>> PF12012.3  Domain of unknown function (DUF3504)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.6e-06     0.063      68     126 ..      23      83 ..       4      88 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.6e-06
    PF12012.3  68 ksylrflssskakksaetkvavgkrkk..eeeepvleqaensenplrcPvklfelYlskcp 126
                   ++l+ ++++ ++++a + +  +k+    +   ++++  e s +p++ P+k f+++l+ c+
  MMETSP0890-20130614|35178_1  23 AMILKSKKPADDPRAALNAMILNKKAPpsDAPTTIKQDEETSAPPKKDPYKVFKMRLLSCR 83 
                  45555566666666666555555555555445567889999****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 361.48
//
Query:       MMETSP0890-20130614|35181_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-40  137.7   0.0    4.8e-40  137.2   0.0    1.1  1  PF01182.15 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase


Domain annotation for each model (and alignments):
>> PF01182.15  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   3.5e-44   4.8e-40       5     196 ..      13     188 ..      10     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 137.2 bits;  conditional E-value: 3.5e-44
                  HHHHHHHHHHHHHTTSS-EEEEE----TTHHHHHHHHCS-T..S-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGG-EE-CCCC-........HHHHHHHHHHHHHCCHTSS....-SEEEE-------BTTB-TT-CCHHH.SS-SEEEE-..STTSS.EEEE-HHHHTTSSEEEEEE---CCHHHHHH CS
   PF01182.15   5 laariaealeeaiaergraslalsGGstpkalyealaeeesaaidwsrvhvflgDERfVpaddpdsneklareaLlskvkipeanvhrmpaesddpeeaaaayeeelrallgaeevpvfDlvlLGmGeDGHtASLFPgspelleekdrlvvavndspkpppeRitltlpalnsarevvflvaGeeKaealee 196
                  + ++ia+ + ++ + ++r+ +a+sGGs+p  l  + + +    +d s++++f++DER+Vp d++dsn+k  +  +++      a+vh++++ + +p ea ++ye+++ ++ g+     +Dl+lLG+G+DGHtASLFP++p +++++ + +  v dspkppp+Rit++  al+++++++ ++aG++Ka +++ 
  MMETSP0890-20130614|35181_1  13 MRSKIASYVYDLCKGKERMVVAVSGGSMPGFLSGLSE-AG---VDLSKWDIFFCDERLVPLDSDDSNFKACQ-FFTR-----FARVHAVQT-DLEPMEALKDYEKRFIEVGGH-----LDLALLGCGPDGHTASLFPQHPIFADTNPAPFRIVLDSPKPPPKRITFSRFALANTDHTIYIAAGASKAPLFAT 188
                  667899999999***************9986666555.44...9************************9764.4444.....568888874.56899***********99874.....9**********************8877667999************************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.89
# Mc/sec: 648.90
//
Query:       MMETSP0890-20130614|35189_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1972  (0.144236); expected 273.4 (0.02)
Passed bias filter:                      923  (0.0675102); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.51s 00:00:00.96 Elapsed: 00:00:00.62
# Mc/sec: 297.61
//
Query:       MMETSP0890-20130614|35188_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.029   14.4   1.1        4.3    7.3   0.1    3.2  4  PF02341.10 RbcX protein
      0.043   13.2   0.2       0.11   11.9   0.2    1.6  1  PF12177.3  Prohormone convertase enzyme


Domain annotation for each model (and alignments):
>> PF02341.10  RbcX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00063       4.3      65     106 ..      44      84 ..      30      89 .. 0.85
   2 ?    2.8   0.0     0.017   1.1e+02      16      45 ..     128     157 ..     122     169 .. 0.77
   3 ?   -3.7   0.0       1.7   1.2e+04      74      92 ..     176     194 ..     175     201 .. 0.66
   4 ?    0.6   0.0     0.078   5.3e+02      90     107 ..     234     251 ..     221     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00063
                  HHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH CS
   PF02341.10  65 kelalriltvrehlaeevadflPemvrtgiqqaniehrrqll 106
                  ++la r+l +r  laee  + l ++  + iq++ + +rr+ +
  MMETSP0890-20130614|35188_1  44 RNLAERVLELRTALAEEFKNDLNDI-EKVIQDQHLRERRAAI 84 
                  6899******************986.5679999999998766 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.017
                  HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH CS
   PF02341.10  16 syltyqavrvvldqlsetnPpraiwlsefs 45 
                     t qa+ +++++ls  n p+a +  +f 
  MMETSP0890-20130614|35188_1 128 RLSTQQAILLIMKRLSLSNSPNAKYTLSFL 157
                  55699***********99988876655554 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 1.7
                  HHHHHHHHHGGGHHHHHHH CS
   PF02341.10  74 vrehlaeevadflPemvrt 92 
                  v e++ +++ad +P+++ +
  MMETSP0890-20130614|35188_1 176 VAENFFHDLADQVPKILDS 194
                  5666677777777777655 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.078
                  HHHHHHHHHHHHHHHHHH CS
   PF02341.10  90 vrtgiqqaniehrrqlle 107
                  + ++i q+n + rr+ le
  MMETSP0890-20130614|35188_1 234 ILDTIPQDNADVRRKALE 251
                  456899*********998 PP

>> PF12177.3  Prohormone convertase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   1.6e-05      0.11       8      24 ..     159     175 ..     157     178 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
    PF12177.3   8 slYnDYvDrFYnakPYK 24 
                  s Y+DY D+F    PYK
  MMETSP0890-20130614|35188_1 159 SFYSDYADQFDGDGPYK 175
                  89**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 793.60
//
Query:       MMETSP0890-20130614|35191_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-05   22.4   0.1     0.0027   17.3   0.0    2.2  1  PF06807.9  Pre-mRNA cleavage complex II protein Clp1
    0.00025   21.6   0.0    0.00048   20.7   0.0    1.5  1  PF13207.1  AAA domain
     0.0064   16.0   0.0      0.011   15.3   0.0    1.4  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
     0.0067   15.8   0.0      0.014   14.8   0.0    1.4  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.037   13.7   0.0    1.5  1  PF13671.1  AAA domain
      0.021   15.0   0.4       0.48   10.6   0.0    2.3  2  PF13191.1  AAA ATPase domain
      0.022   14.0   0.1      0.041   13.1   0.0    1.4  1  PF13481.1  AAA domain
      0.025   14.5   0.0      0.053   13.5   0.0    1.5  1  PF13401.1  AAA domain
      0.026   14.7   0.0      0.045   13.9   0.0    1.3  1  PF13238.1  AAA domain
      0.028   14.2   0.0      0.049   13.4   0.0    1.4  1  PF13173.1  AAA domain
      0.035   14.3   0.0      0.057   13.6   0.0    1.2  1  PF13476.1  AAA domain
      0.041   12.9   0.0      0.066   12.2   0.0    1.2  1  PF03193.11 Protein of unknown function, DUF258
      0.067   13.2   0.0       0.14   12.2   0.0    1.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)


Domain annotation for each model (and alignments):
>> PF06807.9  Pre-mRNA cleavage complex II protein Clp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-06    0.0027       1     191 [.     164     363 ..     164     366 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.6e-06
    PF06807.9   1 GWVkgeGlellleliralspsvvvvlrdqeeklvpdlkralkdkkdglavdvlelaksegvverskktrrslrdlrilsYfsgrltvelspheslvklsdvtpykv.......pfpdvtlpvglqsdvdptkv.....lsalnhsvvalskaesaaenvi............esnvaGfgvvrgvdvekrvitiltPvprekLkpvkvLlvgsle 191
                  GWV g+G+ell  +ir+  p++ v + ++    +p  +r++ + k          +++     r +  + + r+l++ +Yf    ++  ++ ++++   + ++ +        +++  +l++gl    ++ ++       +l +++v+l+ ++++ e++                + G+ +v ++d+ ++ + +  P p   L   ++Ll+g+l+
  MMETSP0890-20130614|35191_1 164 GWVRGLGAELLNSIIRVSRPQLCVAI-GD---CLPLGVRNIISLK----------PYKRPDYLRAQASAPQRRTLALARYFLASTPNIVRVTNGALADPNFAVGQAiaalprfKASIHKLRLGLVGAAAQQEIsfsdaIASLPGALVGLASTIDLTETLDethlllpseiatVLPCRGLALVVALDLTNNSLLLTLPDPHL-LSDCDILLRGTLH 363
                  9*************************.77...8899999888885..........23333334455556667888888888876777666666666555554444444444223333345555555566666666666899999999999955555555555556666667666799999999999999999999999999.9999999999986 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.5e-07   0.00048       3      26 ..      70      93 ..      68     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.5e-07
                 --B--TT---HHHHHHHHHHSTEE CS
    PF13207.1  3 aitGppGsGKsTlakeLaerlglp 26
                 +i+Gp ++GKsTl+k++a+++g +
  MMETSP0890-20130614|35191_1 70 LICGPKAVGKSTLCKLIANAFGDV 93
                 79*****************99833 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-05     0.011       2      48 ..      68     109 ..      67     124 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1e-05
                  EEEEE-------HHHHHHHHHHHHH-------EEE-SS.-TTSS--- CS
    PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyrvavvkhldhGqgeidkpG 48 
                  + +++Gpk +GK+tl++ ++n        v  ++++d Gq+ + +pG
  MMETSP0890-20130614|35191_1  68 VTLICGPKAVGKSTLCKLIANAFG----DVW-ILDSDLGQPLLGPPG 109
                  5689**************998765....333.667777776666665 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.014      15      39 ..      58      82 ..      51      88 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-05
    PF13555.1 15 htveidpkgkntlltGasGsGKSTl 39
                 ++++++ ++++tl+ G+  +GKSTl
  MMETSP0890-20130614|35191_1 58 RVMRLALSHQVTLICGPKAVGKSTL 82
                 6788999999**************9 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.5e-05     0.037       1      31 [.      68      99 ..      68     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.5e-05
    PF13671.1  1 lvllvGlpGsGKstlaerllkklg.yvrlsqd 31
                 ++l++G+ + GKstl++ ++++ g   +l++d
  MMETSP0890-20130614|35191_1 68 VTLICGPKAVGKSTLCKLIANAFGdVWILDSD 99
                 6899***************9999954455555 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00045      0.48      20      42 ..      60      85 ..      51     159 .. 0.83
   2 ?    2.3   0.2      0.17   1.7e+02      75     138 ..     266     335 ..     212     369 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00045
    PF13191.1 20 segsp...lllvtGpsGiGKSsLlre 42
                  +      + l+ Gp+ +GKS+L + 
  MMETSP0890-20130614|35191_1 60 MRLALshqVTLICGPKAVGKSTLCKL 85
                 4444444589*************976 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.17
    PF13191.1  75 lrellrqlltelaaelggwreallaalga...lipelegiiglqalvalldaalartr........rpk..lvlvlD 138
                  +++l   l ++ a+++ ++ +a++++ ga   l++ ++++++l ++  ll       +        ++   lv+ lD
  MMETSP0890-20130614|35191_1 266 IHKLRLGLVGAAAQQEISFSDAIASLPGAlvgLASTIDLTETLDETHLLL-------PseiatvlpCRGlaLVVALD 335
                  55555555566666666666666666666333333333333333333333.......34444444633366888888 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05     0.041      26      65 ..      59     106 ..      41     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-05
    PF13481.1  26 vkgllprgsltllaGapgtGKStlalqlaaava........tGepflg 65 
                  v +l   +++tl+ G+  +GKStl+  +a a           G+p+lg
  MMETSP0890-20130614|35191_1  59 VMRLALSHQVTLICGPKAVGKSTLCKLIANAFGdvwildsdLGQPLLG 106
                  56677789****************988877766777777777777777 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     5e-05     0.053       3      28 ..      65      90 ..      60     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5e-05
    PF13401.1  3 sagilvvtGesGvGKTtllrrlarql 28
                 s+++++++G+  vGK+tl++ +a+ +
  MMETSP0890-20130614|35191_1 65 SHQVTLICGPKAVGKSTLCKLIANAF 90
                 56899****************99976 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.2e-05     0.045       2      24 ..      70      92 ..      70     127 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.2e-05
    PF13238.1  2 litGtpGvGKtTlakeLaerlgd 24
                 li+G+ +vGK+Tl+k++a+ +gd
  MMETSP0890-20130614|35191_1 70 LICGPKAVGKSTLCKLIANAFGD 92
                 69***************998755 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.7e-05     0.049       2      25 ..      66      89 ..      65     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.7e-05
    PF13173.1  2 rkilvitGpRrvGKttllkqlake 25
                 +++++i Gp+ vGK+tl+k +a+ 
  MMETSP0890-20130614|35191_1 66 HQVTLICGPKAVGKSTLCKLIANA 89
                 6799*************9877754 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.5e-05     0.057      17      44 ..      64      91 ..      48      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.5e-05
    PF13476.1 17 FskgltlItGpNGsGKTTildAiclaLy 44
                 +s+++tlI+Gp   GK+T+ + i  a++
  MMETSP0890-20130614|35191_1 64 LSHQVTLICGPKAVGKSTLCKLIANAFG 91
                 6899***************999987776 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.3e-05     0.066      28      56 ..      59      87 ..      36      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.3e-05
                 HHHHHCTTSBEEEE-------HHHHHHH- CS
   PF03193.11 28 elaellkdktsvlvGqSGvGKSsLinall 56
                  ++  l++++++++G+  vGKS+L + ++
  MMETSP0890-20130614|35191_1 59 VMRLALSHQVTLICGPKAVGKSTLCKLIA 87
                 45667999****************98876 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.14       2      23 ..      70      91 ..      69     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
                 EEE-------HHHHHHHHHHCT CS
   PF00004.24  2 llyGppGtGKTllakavakelg 23
                 l++Gp+ +GK++l+k +a+ +g
  MMETSP0890-20130614|35191_1 70 LICGPKAVGKSTLCKLIANAFG 91
                 899****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.73u 0.42s 00:00:01.14 Elapsed: 00:00:00.89
# Mc/sec: 1136.25
//
Query:       MMETSP0890-20130614|35185_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1248  (0.0912815); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.68
# Mc/sec: 1444.86
//
Query:       MMETSP0890-20130614|35200_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    8.8   4.5        2.3    8.2   3.1    1.4  1  PF06547.7 Protein of unknown function (DUF1117)


Domain annotation for each model (and alignments):
>> PF06547.7  Protein of unknown function (DUF1117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.1   0.00017       2.3      57     104 ..      27      78 ..       4      92 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00017
    PF06547.7  57 gsrsrersggalrRifRnllsllgrvrs....srssssssssesgsrkress 104
                  g  sr+ + ++ +R+ R ++s +  +++     r +ss+sss +++ k ++s
  MMETSP0890-20130614|35200_1  27 GDSSRQHQNSISKRLRRHIFSRFDTFSDwiipGRQHSSTSSSAATTGKYNMS 78 
                  677899999999***********99876222223334433333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.81
# Mc/sec: 322.47
//
Query:       MMETSP0890-20130614|35199_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-129  430.7   0.0   5.9e-129  430.4   0.0    1.0  1  PF09818.4 Predicted ATPase of the ABC class
  ------ inclusion threshold ------
       0.13   11.5   0.1       0.31   10.3   0.1    1.6  1  PF13219.1 Protein of unknown function (DUF4027)


Domain annotation for each model (and alignments):
>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.4   0.0  8.6e-133  5.9e-129       2     428 ..       3     450 ..       2     464 .. 0.93

  Alignments for each domain:
  == domain 1    score: 430.4 bits;  conditional E-value: 8.6e-133
    PF09818.4   2 eelekklkkldgkgykaYkelkge..ydled.ltllidrvqgdpfappSkvrvaveaaaaklpeelkkskerrvaledfllrklkkel......ekltvkrkgsgksgklsidkkgqevlersavelkd.eeielrlrvgLPargrrilgkeaaellleelpkiveeallakel...deeelekhvelvedqealreqLeekglvAFvadgailpResgvsdrPlk..eavpFesPe..sleveielpn.kgkvsGlgipkG.itlIvGggyhGKsTLLeAleaGvydhipgDGRefvvtdktavkirAedgrsvkgvdispFin..nLPeg..kdttefstedASGStsqAanimealeagakllLiDEDtsAtNllirDermqelvakekepitplvdrvrelyeklgvstilvvggsgdyldvAdtvilmeeyrpkdvtekakeiae 428
                  eel ++l+ l+gkgy++Y+ + ++  ++le+ + ++ dr+qgd +ap+S++rva+ a+ ++lp  + +s+e rva++d l r++ + +       ++ +   g +k g++ ++ ++q vler av +++ ++ie+r++++LPa+gr+i+g+ aa++++++l+ ++ ++++ k+     ++ l++hv++v dq++lr+qL+++gl+AFva g ilpR +g++drP++  +av+F   +  sl+v+++  + ++++ Glg+++  + lI Ggg+hGKsTLL Al  G+yd+ipgDGRe  vtd t+  ir+edgr v+ vd+s Fi+  + P g  ++t++f+t dASGStsqAa+++ea+eaga+ lL+DED sA N++ +D+rm++lv    +pitp++drvr+l e +g+s+ilvvgg+g+yl++Ad v+lme++ p+dvt+++++i  
  MMETSP0890-20130614|35199_1   3 EELFRTLQGLEGKGYNNYRATLENsaWELEEgVWIIGDRIQGDAYAPASRFRVALGAQRTGLPVMALASREARVAAADWLCRRFVQTArragddLRTETGGWGGQKGGEITMTWPSQFVLERNAVIVQEyGQIEVRFTIALPASGRSIEGHWAANIICKRLATLLADVFFLKSQdpgVSKMLQAHVDAVLDQQFLRAQLAQRGLIAFVAQGCILPRCAGNDDRPMStnNAVAFDTQQlgSLRVSLNERRdGNQIWGLGLERRkVSLICGGGFHGKSTLLAALRVGCYDKIPGDGREGCVTDTTVSTIRSEDGRFVQAVDVSAFISssSFPGGgtSSTKNFTTLDASGSTSQAAAVAEAIEAGAQCLLFDEDLSAINFMTKDARMRALV--PTDPITPYLDRVRNLAEVHGISSILVVGGIGEYLRLADAVVLMENWIPRDVTAQVTSILP 450
                  78999*************9876554899998899999***********************************************9999544443335666778999*******************9965389************************************9999885555799*********************************************99*******9988999**99999899*******9877*************************************************************73369976325788**************************************************..789***************************************************999865 PP

>> PF13219.1  Protein of unknown function (DUF4027)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   4.6e-05      0.31      13      29 ..     266     282 ..     264     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.6e-05
    PF13219.1  13 VsliCLGGFvlsvtlAv 29 
                  VsliC GGF + +tl +
  MMETSP0890-20130614|35199_1 266 VSLICGGGFHGKSTLLA 282
                  9********99777633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.71
# Mc/sec: 1967.71
//
Query:       MMETSP0890-20130614|35202_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-12   47.2   0.0    2.3e-12   46.6   0.0    1.3  1  PF05990.7  Alpha/beta hydrolase of unknown function (DUF900)
    1.9e-09   37.6   1.1    2.3e-09   37.4   0.8    1.1  1  PF12697.2  Alpha/beta hydrolase family
    4.8e-07   29.5   0.0    7.1e-07   28.9   0.0    1.3  1  PF12695.2  Alpha/beta hydrolase family
    6.3e-05   22.4   0.0    9.6e-05   21.8   0.0    1.2  1  PF06259.7  Alpha/beta hydrolase
    0.00018   21.0   0.0    0.00033   20.1   0.0    1.5  1  PF06821.8  Serine hydrolase
     0.0002   20.9   0.0    0.00087   18.8   0.0    1.9  1  PF07819.8  PGAP1-like protein
     0.0034   16.8   0.0     0.0047   16.4   0.0    1.2  1  PF00561.15 alpha/beta hydrolase fold
     0.0064   15.6   0.0     0.0098   15.0   0.0    1.3  1  PF05057.9  Putative serine esterase (DUF676)
  ------ inclusion threshold ------
      0.024   14.1   0.1       0.11   12.0   0.0    2.0  2  PF03869.9  Arc-like DNA binding domain
       0.11   11.8   0.0       0.19   11.1   0.0    1.4  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF05990.7  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.7e-15   2.3e-12      12     114 ..      63     168 ..      52     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.7e-15
    PF05990.7  12 elkksaakeilvfvHGynnsFed....avlraaqiaddlknqgaivvfsWPsagklldynyDresae.asrdalekllrylatkksakkihllaHSmGtwlvlealrq 114
                   ++++  ++i+v+vHG+++s ++    a   +a+++++ k + a++ f WP + +  +y   r++a   ++  l++ll++l  + + ++i ++aHS G +l++ al+ 
  MMETSP0890-20130614|35202_1  63 SISSDTFDTIIVWVHGFRQSLDKvrsvASHLLARVRQSQKKDTAVIAFLWPCHER--GYMRARAEADgEAAYRLATLLKQLSMADPSRRIIVVAHSLGCRLACRALQD 168
                  57778889************99733223334677788888999********9865..9999999886368889********************************986 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.8   1.6e-12   2.3e-09       1     107 [.      73     195 ..      73     258 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.6e-12
                  EEE------------HHHHHH.T.......TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--........--EEEE--------HHHHHH----..EEEEEEE------STT.....- CS
    PF12697.2   1 vvllHGlggsaeswrplaeaL.a.......agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl.......rpvvlvGHSlGgavalaaaarrpd.lvrglvlidppgplpas.....a 107
                  +v +HG+ +s +  r++a++L a       ++  v+a+ +p+h r    +     + e + +++ +l++ l         r++++v+HSlG+ +a +a++++   + ++l+l++++ ++ a       
  MMETSP0890-20130614|35202_1  73 IVWVHGFRQSLDKVRSVASHLlArvrqsqkKDTAVIAFLWPCHERGYMRA-----RAEADGEAAYRLATLLKQlsmadpsRRIIVVAHSLGCRLACRALQDHDCgRCHHLLLLAAAMDNGALmsprgE 195
                  799****************996666666555678*********7754433.....45555555555544444444588889******************987646*********99966554444440 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   5.2e-10   7.1e-07       2      98 ..      73     190 ..      72     256 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5.2e-10
    PF12695.2   2 vvlvhGaggdssayeplae.......alakrgfavvavdlpghgas.......egaa.....aakrvlaadll...dleriilvGhSlGGgvalelagrd..drvkglvllapfpdgedla 98 
                  +v vhG+ ++ +  +++a        + +k+  av+a+ +p h +        +  +     +++++l ++l      +rii+v hSlG ++a+++ +++   r   l lla+  d+ +l 
  MMETSP0890-20130614|35202_1  73 IVWVHGFRQSLDKVRSVAShllarvrQSQKKDTAVIAFLWPCHERGymraraeA--DgeaayRLATLL-KQLSmadPSRRIIVVAHSLGCRLACRALQDHdcGRCHHLLLLAAAMDNGALM 190
                  899*******99999998855666656677799999996665555322223331..144355555555.5444776778*******************98788999999999976654443 PP

>> PF06259.7  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     7e-08   9.6e-05      44     129 ..      87     168 ..      67     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 7e-08
    PF06259.7  44 rdlraeaaaaeeaagkpesvAviAWlgYetPsgaskdvatddrAeagAaeLerllkdlraasvpsqelallgHSYGSlvcslAldd 129
                  r++++++ a   + ++ +++AviA+l   +  + +   a ++   ++A +L+ llk+l+ a  ps+++ +++HS G  ++ +Al+d
  MMETSP0890-20130614|35202_1  87 RSVASHLLAR-VRQSQKKDTAVIAFLW--PCHERGYMRARAEADGEAAYRLATLLKQLSMAD-PSRRIIVVAHSLGCRLACRALQD 168
                  4444444333.35677789*****984..335666777777777899**************9.**********************9 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.4e-07   0.00033      51      91 ..     144     184 ..     125     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.4e-07
                  GG--TTEEEEEE----HHHHHHHH---SS-E--EEEE---- CS
    PF06821.8  51 aaaeekvvlvAHSlgclavlhaaelqsrakvagalLVApad 91 
                  a  ++++++vAHSlgc ++++a++ +   + ++ lL A a 
  MMETSP0890-20130614|35202_1 144 ADPSRRIIVVAHSLGCRLACRALQDHDCGRCHHLLLLAAAM 184
                  3445669****************999999999999999875 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.3e-07   0.00087       7     105 ..      73     168 ..      69     192 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6.3e-07
    PF07819.8   7 VlfipGnagsykqvRsiaseakrkala.nesaaeldfftvdfneeltafdgrtledqaeylnqairkilslysssekeptsviliGHSmGGlVArsaltl 105
                  ++ ++G   s+++vRs+as++ +   + +++ +++  f    +e   ++  r  e+     ++ ++++l+++ s   + +++i+++HS+G  +A  al  
  MMETSP0890-20130614|35202_1  73 IVWVHGFRQSLDKVRSVASHLLARVRQsQKKDTAVIAFLWPCHERG-YMRARA-EADG-EAAYRLATLLKQL-SMADPSRRIIVVAHSLGCRLACRALQD 168
                  789******************5553320233333333444444433.344443.3333.3466899999999.9999*************9999777654 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.4e-06    0.0047      45      80 ..     147     217 ..     128     255 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.4e-06
                  S..EEEEE-B---HHHHHHHHHCGG.GEEEEEEESB--................................H CS
   PF00561.15  45 k..ltlvGhSmGGmialayaaeypd.rvkamvllgtva................................v 80 
                  +  +++v+hS+G+++a+ +++++   r+ ++ ll++++                                +
  MMETSP0890-20130614|35202_1 147 SrrIIVVAHSLGCRLACRALQDHDCgRCHHLLLLAAAMdngalmsprgefdhllfpagcliekptvaysrH 217
                  145*******************************9987666666666666666666666666555555543 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.2e-06    0.0098       6      96 ..      71     165 ..      66     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.2e-06
    PF05057.9   6 hLvVlvHGlqgnsaDlelikeqlekikkelpee...kiefl..msennesktfkgidv.lgerlaeevlevvkkkkdknkkiSfvghSlGgliaraa 96 
                   ++V vHG+  + +  ++++ +l +  ++++++   +i fl    e+ + +  +  d   ++rla+ + +   ++ ++  +i +v+hSlG   a  a
  MMETSP0890-20130614|35202_1  71 TIIVWVHGFRQSLDKVRSVASHLLARVRQSQKKdtaVIAFLwpCHERGYMRARAEADGeAAYRLATLLKQLSMADPSR--RIIVVAHSLGCRLACRA 165
                  689*******************9998444444333456665324566666666666655999***9988888888888..**********7655554 PP

>> PF03869.9  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.7e-05      0.11      28      48 ..      87     107 ..      82     109 .. 0.91
   2 ?   -1.4   0.0       1.2   1.7e+03      11      27 ..     112     128 ..     110     130 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.7e-05
                  --CHHHHHHHHHHHHHH--S- CS
    PF03869.9  28 RSmNSEilqrveeslkkegav 48 
                  RS+ S +l+rv +s kk+ av
  MMETSP0890-20130614|35202_1  87 RSVASHLLARVRQSQKKDTAV 107
                  *****************9988 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
                  SEHHHHHHHHHCCCC-- CS
    PF03869.9  11 lPeevrekvkevAeeng 27 
                  +P   r  ++ +Ae++g
  MMETSP0890-20130614|35202_1 112 WPCHERGYMRARAEADG 128
                  78888889999***987 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.19      39      79 ..     119     163 ..      66     168 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00014
                  -HHHHH....HHHHHHHHHHHHHHHHSTTSEEEEE-------HHH CS
   PF01764.20  39 fleayk....sareqvlkelkrllekypdykivvtGHSLGGalAl 79 
                  +++a      +a++++ + lk+l  + p+ +i+v+ HSLG  lA+
  MMETSP0890-20130614|35202_1 119 YMRARAeadgEAAYRLATLLKQLSMADPSRRIIVVAHSLGCRLAC 163
                  3333335666899999999*********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.65
# Mc/sec: 999.10
//
Query:       MMETSP0890-20130614|35210_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   44.2   0.1    2.2e-11   43.6   0.1    1.3  1  PF02146.12 Sir2 family
  ------ inclusion threshold ------
       0.12   11.8   0.9        0.3   10.6   0.6    1.6  1  PF08165.6  FerA (NUC095) domain


Domain annotation for each model (and alignments):
>> PF02146.12  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   3.3e-15   2.2e-11      59     136 ..      12     100 ..       2     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 3.3e-15
                  ..S---HHHHHHHHHHH---EEEEEE--SS-HHHH----..........SEEE----TTEEEETTTS-EEEECCG.GTCCCHH--.B-S CS
   PF02146.12  59 aeakpnaaHkflkklekkgkllrliTQNidnLekkaGsk..........kvvelHGslakakcvkCeakesgeel.keeieaekveece 136
                   + kpn++H++++kle+++ llr +T Nid+L+  aG +            velHGsl ++ c++  +++  +e+  ++i+++k ++++
  MMETSP0890-20130614|35210_1  12 LKCKPNTTHQAIAKLEDTSILLRHYTLNIDGLHALAGAStwdatnsnsgATVELHGSLREIVCTHTGNIYAVDEAaLNRIKRKKLPKVD 100
                  2689*********************************98888888888889**************999988765415677777777654 PP

>> PF08165.6  FerA (NUC095) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   4.4e-05       0.3      28      55 ..      93     120 ..      87     122 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.4e-05
    PF08165.6  28 skpLPelegkpnataLDiqlkklReekl 55 
                  +k+LP++++  ++  LD+q +  R+++l
  MMETSP0890-20130614|35210_1  93 RKKLPKVDNDTPIRTLDLQARRSRKRHL 120
                  569***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 947.65
//
Query:       MMETSP0890-20130614|35206_1  [L=701]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-45  155.2   0.0    3.6e-44  150.1   0.0    2.3  2  PF00270.24 DEAD/DEAH box helicase
    2.8e-26   91.0   0.1    6.9e-26   89.8   0.1    1.7  1  PF00271.26 Helicase conserved C-terminal domain
    0.00015   21.5   0.0    0.00063   19.5   0.0    2.1  1  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0     8e-48   3.6e-44       2     172 ..     283     480 ..     282     481 .. 0.93
   2 ?    2.7   0.0     0.015        67      67      97 ..     547     579 ..     521     591 .. 0.78

  Alignments for each domain:
  == domain 1    score: 150.1 bits;  conditional E-value: 8e-48
                  HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H......TTSTSEEEEEESSHHHHHHHHHHHHHHTTT.SS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT.....................SEEEEEESS-THHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxx RF
   PF00270.24   2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk......kttikkalivaPtreLaeqtlnnlkkfkky.pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr.....................lqvivlSATlpkdvkk 172
                  piQ++aip  l  +dv++ aeTGsGKT+af+ip+l+ +++  k      +++   al++aPtreLa+q+ +++ k+++  p+++++ i+gg + + dq+ +l++gv+i+vgTpgrl d ++++ l l q ++++lDEadr+ ++gf++q+++il+ +  + +                     + + ++SAT+p  v++
  MMETSP0890-20130614|35206_1 283 PIQRQAIPVGLALRDVIGIAETGSGKTAAFAIPMLDYVYNLPKeritnlSEDGPLALVLAPTRELAAQISEEILKLAQFlPDIKCCTIVGGASVE-DQAFRLREGVEIIVGTPGRLNDCLERQYLVLNQANYVILDEADRMIDMGFEPQVHSILESMGGLLKsqneiefhsqeqavrrgeivfRVTAMFSATMPPPVER 480
                  8**********99**************************988777777766777************************9**************88.******999*****************999****************************999866644577899**************777*********88886 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.015
                  HHHHHTTTSS.EEEEETTSSBHHHHHHHHH...T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
   PF00270.24  67 nlkkfkkypklrvlliiggvalardqlsvl...d 97 
                   l+kf++ +++r+l i+gg+a++++++s l   +
  MMETSP0890-20130614|35206_1 547 ALSKFLQSKGIRTLTIHGGKAQDQREAS-LhsfK 579
                  6789999999***********7744443.33554 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.1   1.5e-29   6.9e-26       1      78 []     550     628 ..     550     628 .. 0.98

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 1.5e-29
                  HHHHH----EEEE-TTS-HHHHHHHHHHHHTTTS.SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   1 lllekkgikvailhgelpqnereeileqfnagks.kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  ++l+ kgi+++ +hg+  q++re+ l++f++g++   l+at+va+rG+d+p+v++Vinfd+p   ++y +riGRtgRag
  MMETSP0890-20130614|35206_1 550 KFLQSKGIRTLTIHGGKAQDQREASLHSFKNGRNiSNLIATDVAGRGLDIPNVSHVINFDMPLKIENYSHRIGRTGRAG 628
                  699*******************************999****************************************97 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.4e-07   0.00063      32     162 ..     302     426 ..     296     473 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.4e-07
   PF04851.10  32 maTGtGKTlvaa............sliarlar.........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakk 162
                  ++TG+GKT   a            +      r          +l+l+p++el  q  ee+         ++ ++  ++ k    +  +++++d+  +  +  eii+ t  +l+  le+           +   l++ +++i DEa r+ ++ 
  MMETSP0890-20130614|35206_1 302 AETGSGKTAAFAipmldyvynlpkE------RitnlsedgpLALVLAPTRELAAQISEEI---------LKLAQFLPDIKC-CTIVGGASVEDQAFRLREGVEIIVGTPGRLNDCLER-----------QYLVLNQANYVILDEADRMIDMG 426
                  68**********6666555544443......0555555**********************.........333444444443.44556666667777788999***********99875...........788999999******98888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.38s 00:00:01.45 Elapsed: 00:00:00.73
# Mc/sec: 2301.16
//
Query:       MMETSP0890-20130614|35209_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-13   49.1   0.0    3.8e-13   48.4   0.0    1.2  1  PF00501.23 AMP-binding enzyme
  ------ inclusion threshold ------
      0.022   14.2   0.1      0.045   13.3   0.1    1.5  1  PF07676.7  WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   5.5e-17   3.8e-13     254     408 ..      10     167 ..       4     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 5.5e-17
                  TT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH.CCH---EBSTTTEEEEEBSTT-BEE-S----EEEES.TTS--B-TT-HHHHH..HHBCCSTTEEE---EEEE-TT....--EEEE--GGGEEE--.--EEEHHHHHHHHH CS
   PF00501.23 254 sslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdeetkpgsiGrplpgvevkivdeegkevppgevGEllirg.pgvakGYlkdpelta..eafdedgwlyrTGDlgrlded....GyleiiGRkkdqikir.GeniepgeiEsall 408
                   ++ ++ sgg+pl+ +++ rl++a+  ir++  YG+tE+ g+   +  g+   ++  + +p +  +v i    ++  +  ++GElli+g  g   GYlkd +l a  ++ d++gw  +TGD+ r+         l+ + R +d+i ++ Ge + p + E+ ++
  MMETSP0890-20130614|35209_1  10 TRCAAVRSGGAPLPTAVATRLMSAG--IRVQTHYGQTESPGMQLLTVTGAAPDELAVMIPPWDAQKVQIKVRLDN--EQTQQGELLISGcYGSSPGYLKDGKLIAgsSRQDSEGW-HHTGDIFRWVTTkngsRGLRHVSRNDDLILLStGEMFNPVPFEEKVQ 167
                  6778899****************99..************999888888888767777777776666666555533..55789*******************98763367788888.*********999888889*************88********999775 PP

>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.6e-06     0.045      13      39 .]      99     128 ..      90     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.6e-06
                  EEEE-----EEEEEE-BT..TB-E...EEE CS
    PF07676.7  13 ePawSPDGkkivFtSnRgdrGspd...iyv 39 
                  +P + +DGk i+ +S+++ +G+ +   i++
  MMETSP0890-20130614|35209_1  99 SPGYLKDGKLIAGSSRQDSEGWHHtgdIFR 128
                  78999**********9766***99888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1159.32
//
Query:       MMETSP0890-20130614|35211_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   36.6   0.0    2.7e-09   36.1   0.0    1.1  1  PF05686.7 Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.095   12.1   0.1        1.3    8.5   0.0    2.4  2  PF05030.7 SSXT protein (N-terminal region)


Domain annotation for each model (and alignments):
>> PF05686.7  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   3.9e-13   2.7e-09     139     315 ..     184     382 ..     180     399 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 3.9e-13
    PF05686.7 139 wslllkelkegnkkvkweerepyaywkGnpsvae.tReeLlkcnrskkelvdarltkq.......................dekkeskegvkessledqckhkYkiyieGvaa.svs..ekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhL 315
                  w++ l++  e ++  +w++r++   ++G     +  R +L+++  + ++ +d+ +tk                         ++   +    +++ ++  ++++ + + G++  s+s  +++++a +++vl+ k +  ++++++Lkp  hY+P++ ++    +  +     ++++  +++   +++F  e L+  +++  + ++
  MMETSP0890-20130614|35211_1 184 WDNYLNQSLEFSASRPWNNRTNRLLFRGACGPGSqARFNLMQLPDT-EHELDVGFTKAdgyptleacvlalakkmnatesdVHRILLHRLKSHVPQSEYSNYRFLLHMPGSSTgSYSrnLQHLFAHGAIVLIWKHSAVEWYYSHLKPGIHYLPVDAHTLYPTMSAL----IKNQRMQNHLRLGARRFCDEFLNGRHLVARWESI 382
                  777776666889999*************97765557*******987.677899999999****************9998853344566677799999*************86435542279**********************************95554444444....5566666677777777777777777666666655 PP

>> PF05030.7  SSXT protein (N-terminal region)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00019       1.3      33      53 ..      13      33 ..       5      35 .. 0.89
   2 ?    0.4   0.0     0.065   4.4e+02      25      46 ..     250     271 ..     245     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00019
    PF05030.7 33 kAqEcvqyqqiLHrNLvyLat 53
                 k +Ec qy  i  +N v+L++
  MMETSP0890-20130614|35211_1 13 KERECGQYSAIVFQNFVFLSD 33
                 678****************97 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.065
    PF05030.7  25 IqdyqnkgkAqEcvqyqqiLHr 46 
                  +    +k  A+E+  ++ +LHr
  MMETSP0890-20130614|35211_1 250 VLALAKKMNATESDVHRILLHR 271
                  555667889************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.39s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 1179.95
//
Query:       MMETSP0890-20130614|35213_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   36.6   0.0    4.8e-09   35.3   0.0    1.7  1  PF04321.12 RmlD substrate binding domain
      5e-05   23.2   0.0    9.4e-05   22.3   0.0    1.3  1  PF13460.1  NADH(P)-binding
    0.00022   20.6   0.1     0.0026   17.1   0.0    2.4  2  PF01370.16 NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> PF04321.12  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.1e-12   4.8e-09     123     234 ..     174     285 ..     138     300 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.1e-12
                  S----TTT---HHHHHH-SSEEEEEE-SEE--.---HHHHHHH--.---SEEEEESS..-B---EEHHHHHHHHHHHHHHT-.....---EE---B----HHHHHHHHHHH---- CS
   PF04321.12 123 nvYGrtKlaGEqavlaanpkalivRtawvygekgknfvktmlrla.aereelkvvaD..qlgsPTsaedlAdvllallekaaeeealagvyHlansgetswfdfAraifkelgad 234
                  + ++r++++GE av++a p+a+i+R + ++g+ +  +++++ + a   r  + +v+D   l +P  ++d+A+++  l +   +   +  ++Hla+    s+ ++A+ +++ ++ +
  MMETSP0890-20130614|35213_1 174 SRWARSRYQGELAVREAFPEAIIIRPTPMFGH-EDRLLNWVAQSAgYFRGYIPLVEDgaALAQPVFVQDVAKAVKFLCRDSED--FIGKTFHLAGPADYSRRELAEFVLDITKQN 285
                  46799**************************9.5567777777775889********44578****************99997..789*********************988765 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.1e-08   9.4e-05      50     177 ..      89     246 ..      85     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.1e-08
    PF13460.1  50 dledlaealagvdvvvdafgarpe.........................d...regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelleasgldwtivrPaalfeaeettyelite.............gdpagesaisraDvAaal 177
                  d e++a a+ ++ vvv ++g+  e                         +    + +++l+++++  gv+ ++ vs+  ++ ++p+           + +r++ ++e +++++  +  i+rP+ +f+ e +   ++ +             +++a  +++ ++DvA+a+
  MMETSP0890-20130614|35213_1  89 DAESMATAIGPASVVVNCIGNYYEtgsaiptrrppdyswrslstvnysfEevhIDVARRLAEVARVKGVETFIHVSSSLADPNSPS-----------RWARSRYQGELAVREAFPEAIIIRPTPMFGHEDRLLNWVAQsagyfrgyiplveDGAALAQPVFVQDVAKAV 246
                  7789999999*********765556666666666777777676666655155599****************************999...........679*****************************9988887777777777888864556667*********996 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.55   2.5e+03     168     200 ..       9      43 ..       6      59 .. 0.67
   2 !   17.1   0.0   5.7e-07    0.0026      80     227 ..     128     254 ..     124     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.55
                  SEEE-TT.....-SHHCHHHHHHHHHH---SEEEE CS
   PF01370.16 168 fnvyGpr..nfdeevshvipalirkilegeevtll 200
                   n +G++   ++ ++s++  a+    ++g++  l+
  MMETSP0890-20130614|35213_1   9 GNFFGEYghGGHSSNSGLTVAMFGATHTGDSAMLC 43 
                  46777776668888999999999999888873333 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 5.7e-07
                  HCC.CSHHHHHHHHT---HHHHHHHHHHTT.EEEEEEEGGG---BSSSCB-TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---S.EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
   PF01370.16  80 ass.edpadfieanvegtlnlleaarkagvkrflfasSsevygkdaeqpikEetplgplspYaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegee.vtllgdGtqlRdflyveDvaealllvlehgd 227
                  +s+ + +  f e ++ ++++l e+ar +gv+ f+++sSs   ++    p          s +a++ ++ge  v+++  e    aii+r++ ++G        +++++ +++ +   +  ++l+ dG +l + ++v+Dva+a+ ++ +  +
  MMETSP0890-20130614|35213_1 128 RSLsTVNYSFEEVHIDVARRLAEVARVKGVETFIHVSSSLADPNS---P----------SRWARSRYQGELAVREAFPE----AIIIRPTPMFGHE------DRLLNWVAQSAGYFRGyIPLVEDGAALAQPVFVQDVAKAVKFLCRDSE 254
                  5555667789999999**********************9544444...3..........67***********9999976....9************......88887777777644436***********************99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.81
# Mc/sec: 1097.59
//
Query:       MMETSP0890-20130614|35212_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-05   23.2   0.0    8.3e-05   22.2   0.0    1.5  1  PF02342.13 Bacterial stress protein
  ------ inclusion threshold ------
      0.041   13.6   0.1       0.16   11.7   0.0    2.0  2  PF07647.12 SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PF02342.13  Bacterial stress protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-08   8.3e-05      14     112 ..     239     345 ..     230     348 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.2e-08
   PF02342.13  14 vilsgdnatgdGsga..rlddetlvvdldrlpadvekieftvtihdagsgaqafgpvanafvrvvdrenlvelarydltedaapetalIvaelyr..........eagawk 112
                  + ++gd + g+ +      d+e++ +dl +lp ++++++   +i+ a   + +f ++a a+vr+v++++++el r +l   ++ + al +a+l            ++ +w+
  MMETSP0890-20130614|35212_1 239 IVHTGDILVGQQDTSspTIDLERIYIDLYNLPLAIDALALEANIYTA---GLTFDAIASAYVRIVNADTNQELGRMSLDDLGSNRVAL-FARLFKlqssssssnlQPYQWH 345
                  6677777666666556788*************************987...789*************************9999955444.4444444666666666666666 PP

>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05      0.16      11      55 ..      72     122 ..      66     131 .. 0.85
   2 ?   -2.5   0.0      0.63   4.3e+03      36      58 ..     308     330 ..     304     333 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.3e-05
                  HHHH...HT--.CCSHHHHHHHTS-SCTCCCSSCHHHH..HCCCHHCHHHH CS
   PF07647.12  11 eWLr...sigl.kqYtenFrdqgitggelllrlteedL..krlGitsvghr 55 
                   WL      g+ ++Y   F ++g+t+ + l ++++e++   rl+ +++g +
  MMETSP0890-20130614|35212_1  72 VWLNdkvHEGYgEKYSTTFIECGYTTVKELRGMSQEEMinLRLKLEKAGAQ 122
                  5777644449999*************************7669999999875 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.63
                  CCSSCHHHHHCCCHHCHHHHHHH CS
   PF07647.12  36 llrlteedLkrlGitsvghrkki 58 
                  l r++++dL    + ++ + +k+
  MMETSP0890-20130614|35212_1 308 LGRMSLDDLGSNRVALFARLFKL 330
                  56899999987766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 1232.04
//
Query:       MMETSP0890-20130614|35215_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-27   96.6   0.0    3.8e-27   94.8   0.0    1.8  2  PF00117.23 Glutamine amidotransferase class-I
    1.4e-22   79.0   0.0    2.6e-21   75.0   0.0    2.4  1  PF00958.17 GMP synthase C terminal domain
    1.6e-06   27.6   0.4    5.4e-06   25.8   0.3    1.9  1  PF07722.8  Peptidase C26
    2.4e-06   26.5   0.0     0.0051   15.6   0.0    2.3  2  PF02540.12 NAD synthase
     0.0081   15.8   0.0      0.032   13.9   0.0    2.0  1  PF01507.14 Phosphoadenosine phosphosulfate reductase family
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.027   13.8   0.0    1.3  1  PF00733.16 Asparagine synthase
      0.022   13.2   0.0       0.12   10.8   0.0    2.0  2  PF03054.11 tRNA methyl transferase
       0.11   11.8   0.0       0.32   10.3   0.0    1.7  2  PF02568.9  Thiamine biosynthesis protein (ThiI)


Domain annotation for each model (and alignments):
>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0   2.2e-30   3.8e-27      11     189 ..       3     169 ..       1     172 [. 0.84
   2 ?   -1.3   0.0      0.66   1.1e+03      25      56 ..     199     233 ..     182     245 .. 0.58

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 2.2e-30
                  HHHHHHHHHTT-EEEEEETTGGHHHHHHTTT--SEEEEE----TTTT-CCHHHHHHHHGTTTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTTSCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS-GGGHHHHHHH CS
   PF00117.23  11 knleralrelgvkvevvpndadaeeileklsnpdgilisgGpgspgevegkieaikearenkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgkaallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssstpggpellfnfl 189
                  + l+ ++r++++   vvp++ +ae+     s++ g++isgGp s+ e e + ++++++ +  +P+LGIC+G Q++++ +gg v +  + e+  ++  +  + + +l+     +  v+++H++ v++   lp+g+e +a++e++   +a+    +p++gvQFHPE+ +t  g+++l nf+
  MMETSP0890-20130614|35215_1   3 HLLASRIRRHEAFSAVVPCEISAEDL----SDACGVIISGGPQSVFE-ESSPRVDSKIWSLPVPLLGICYGCQMMCQDLGGIVKNSDHGEYGAAELHCTVETN-GLIPSG--KRVVWMSHRDIVTR---LPDGMETIATTEHS-PHAAVKLIGKPVFGVQFHPEVRHTSDGEKILGNFV 169
                  6788899999999*****99888777....79*************96.*********************************8887776666666666665433.444444..3479*********9...***********886.55555555568**********************95 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.66
                  EEEETTGGHHHHHH...TTT--SEEEEE----TTT CS
   PF00117.23  25 evvpndadaeeile...klsnpdgilisgGpgspg 56 
                  +   n+++  + ++    ++++  +l+sgG+ s  
  MMETSP0890-20130614|35215_1 199 DTDENKEQPSKKKAkltRKKKAVFMLVSGGVDSTV 233
                  33333332222222343378899999999998865 PP

>> PF00958.17  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.5e-24   2.6e-21      16      93 .]     449     634 ..     437     634 .. 0.96

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 1.5e-24
                  EE---EEEEE----------EEE...........................................................................................................EEE--B--SSS-------S-HHHHHHHHHHHH.C-.-----EEEE---S-----S- CS
   PF00958.17  16 afavllpvksvGvqgdkRtysyv...........................................................................................................vvlRavetsdfmtadvaelplevLeeiskrivnev.egvsrVvyditsKPPaTiEw 93 
                   ++++ p+ksvG qgd+Rty +                                                                                                            ++lR+v ++++mta +++lp+ +L+e++ r+ +++ ++v+ V+yd+t+KPP+TiEw
  MMETSP0890-20130614|35215_1 449 WQVHVPPLKSVGCQGDARTYRHFavltkyrqdwdeiataatrlvnghddlnrvvislktndsievhqgfsltdspphtvtksrldilrradhiattfladnghlnniwqcpvvmaplkpthltsasnkevIILRPVDSTEAMTAAFSRLPIPILHELAARLLEHLsDHVADVFYDVTNKPPGTIEW 634
                  456899***********************************************************************************************************************************************************9998358****************** PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.3   3.1e-09   5.4e-06     106     217 .]      59     154 ..      51     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.1e-09
                  ---BB------HHHHHHH------EEE.............EEEEEEE--ET-STTTTS-HHHS--EEEEEEEE-BHHHHH-EEEEEEE----EEEEEEE--S-B----S-TT CS
    PF07722.8 106 gvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavslekgsllarllgaeeievnslHhqaikelakglevlAtaedgvieaieseeakyfvlgvQWHPE 217
                   vP+lgiC G q++   lgg +  + +           e  a++ +  +e ++l+ +     +  v   H+  +++l +g+e +At e     a++ +   ++v+gvQ+HPE
  MMETSP0890-20130614|35215_1  59 PVPLLGICYGCQMMCQDLGGIVKNSDHG----------EYGAAELHCTVETNGLIPS----GKRVVWMSHRDIVTRLPDGMETIATTEHSPHAAVKLIG--KPVFGVQFHPE 154
                  58************99999987766553..........3367788889999988654....6679**********************************..47********9 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-06    0.0051      17      54 ..     217     254 ..     205     287 .. 0.79
   2 !    8.5   0.0   0.00043      0.74     148     177 ..     378     407 ..     373     410 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3e-06
                  TT-EEEE------HHHH---HHHHHHTCGCEEEEE--- CS
   PF02540.12  17 gakgvvlGlSGGvDSalvaalavkalgkenvlalimPs 54 
                  + k v + +SGGvDS+++ a+  kal  e+v +l++ +
  MMETSP0890-20130614|35215_1 217 KKKAVFMLVSGGVDSTVAFAMIAKALPAERVRGLYVDT 254
                  445666778*************************9853 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00043
                  EETTTT--SHHHHHHHHHTT--HHHHCS-- CS
   PF02540.12 148 lapiaellKtevyeLakrlnvPervikkaP 177
                  l+p+ el+K ev+++ ++l+ P++++ ++P
  MMETSP0890-20130614|35215_1 378 LEPLSELYKDEVRAVGEQLGLPHKMVWRQP 407
                  78************************9999 PP

>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.9e-05     0.032       2      49 ..     221     270 ..     220     462 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
                  EEEE-----HCHHHHHHHHHHCTT..HEEEEEE-TT--HHHHHHHHHHHH CS
   PF01507.14   2 lvvsvsgGkdslVllhLalkafkp..vpvvfvdtghefpetiefvdelee 49 
                  ++++vsgG ds+V + ++ ka++   v+ ++vdtg    +  ++v e  e
  MMETSP0890-20130614|35215_1 221 VFMLVSGGVDSTVAFAMIAKALPAerVRGLYVDTGMMRLDESRTVRESLE 270
                  689*******************9955589*****9865554444444444 PP

>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.027      11      59 ..     212     261 ..     204     293 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.6e-05
                  HHHGGG-SEE-EE-----HHHHHHHHHTT..TSSEEEEEE---TSS-..- CS
   PF00733.16  11 krrlrsdvpvgvllSGGlDSsviaalaar.esdpplktfsvgfeeseade 59 
                  ++ +r+++ v +l SGG+DS+v  a+ a+    ++++ + v++ + + de
  MMETSP0890-20130614|35215_1 212 AKLTRKKKAVFMLVSGGVDSTVAFAMIAKaLPAERVRGLYVDTGMMRLDE 261
                  566789999*************9999888666677777777776665555 PP

>> PF03054.11  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.9e-05      0.12       2      33 ..     220     253 ..     219     273 .. 0.77
   2 ?   -0.6   0.0      0.19   3.3e+02     166     186 ..     379     399 ..     372     403 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.9e-05
   PF03054.11   2 kvvvalSgGVDSsvaalllkeqg..yevigvfmk 33 
                   v++++SgGVDS va ++++++     v g+++ 
  MMETSP0890-20130614|35215_1 220 AVFMLVSGGVDSTVAFAMIAKALpaERVRGLYVD 253
                  6999**************9998644567777765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.19
   PF03054.11 166 fPlgeltKeevrkiAkeagle 186
                   Pl el K+evr++ ++ gl+
  MMETSP0890-20130614|35215_1 379 EPLSELYKDEVRAVGEQLGLP 399
                  599**********99999886 PP

>> PF02568.9  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00019      0.32       4      25 ..     219     240 ..     216     272 .. 0.76
   2 ?   -3.0   0.0       2.2   3.7e+03      47     151 ..     356     388 ..     349     397 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00019
    PF02568.9   4 gkvlaLlSgGiDSpVaaylllk 25 
                  + v +L+SgG+DS Va  +++k
  MMETSP0890-20130614|35215_1 219 KAVFMLVSGGVDSTVAFAMIAK 240
                  67899***********999876 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.2
    PF02568.9  47 ekvrklaellaeyktelevklvvvdfkkvqkeileklkekllivllkrvmlkvAekvaeeegaealvtGesLgQVaSQTleNlkvisaavnlpilrPLIgldKee 151
                  +++++ ++++ae+++ le  lv  ++ ++ k+                                                                        e
  MMETSP0890-20130614|35215_1 356 DVIKTHHNRVAEIDALLEQGLVLEPLSELYKD------------------------------------------------------------------------E 388
                  55566666666666666666555555554444........................................................................3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.04u 0.37s 00:00:01.41 Elapsed: 00:00:01.10
# Mc/sec: 1383.35
//
Query:       MMETSP0890-20130614|35214_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.092   10.8  11.3       0.13   10.4   7.8    1.2  1  PF06375.6  Bovine leukaemia virus receptor (BLVR)
       0.24   10.6   9.9       0.54    9.4   6.9    1.5  1  PF04592.9  Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.8   1.9e-05      0.13     238     307 ..      70     147 ..      12     172 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.9e-05
    PF06375.6 238 a......aasvleedevslavtvlkeaqeeereenkdakaeeskkssktkkkkqrkeke..ekkkkkkkskkrchqse 307
                  +      +++  eedev+ + t +++ +e ++e +k++++++  k  kt++ k++k+ +  +++ + ++s+kr  ++e
  MMETSP0890-20130614|35214_1  70 SelwfsfTSTFGEEDEVKCTITSSSDESEADNESSKNNEKNDKTKKHKTRHTKKKKTLRrhHRPTHDDQSRKRNCDNE 147
                  223444445567999**9999999998888888888888777766666666666665442233334444444432222 PP

>> PF04592.9  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.9   7.9e-05      0.54     144     220 ..      78     147 ..      74     164 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.9e-05
    PF04592.9 144 atyceekCGnCsltsledldeckkvtleekdkpvekeprkdlekhhshrkldsekekhkhshehlgssslkesqkpd 220
                  +t+ ee   +C++ts++d++e+++ ++++++k  ++   k++++ h+++    +k  ++h++  + ++s+k++ +++
  MMETSP0890-20130614|35214_1  78 STFGEEDEVKCTITSSSDESEADNESSKNNEKNDKT---KKHKTRHTKK----KKTLRRHHRPTHDDQSRKRNCDNE 147
                  56667777799********99999997777765555...2233333332....222222222222223333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1521  (0.111249); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:01.10
# Mc/sec: 853.97
//
Query:       MMETSP0890-20130614|35216_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:01.04
# Mc/sec: 389.41
//
Query:       MMETSP0890-20130614|35218_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1286  (0.0940609); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.60s 00:00:01.19 Elapsed: 00:00:00.97
# Mc/sec: 1007.95
//
Query:       MMETSP0890-20130614|35219_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-58  198.0  49.1      2e-58  197.6  34.0    1.1  1  PF00999.16 Sodium/hydrogen exchanger family
    4.9e-21   74.7   0.0    1.1e-20   73.6   0.0    1.6  1  PF02254.13 TrkA-N domain
  ------ inclusion threshold ------
      0.052   13.2   0.0       0.12   12.0   0.0    1.6  1  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF00999.16  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6  34.0   4.4e-62     2e-58       3     378 ..      24     382 ..      22     389 .. 0.91

  Alignments for each domain:
  == domain 1    score: 197.6 bits;  conditional E-value: 4.4e-62
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....X---S-SSHHHHS--SSTT----GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXGGGXXHHHHHHHH.HHHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHTTXXXX.XXXHHHHXXXHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF00999.16   3 llvllallagllarrlklpevvglilaGlllGpsglglvepsleldlevlselglplllFlaGleldlrelrkngksilllallgvlisflliGlllallllilglslleallfgallsatdpvvvlavlkeegrvnkrlgtlilgesvlnDavavvllavlialageeagglsdlglliliflvvalgglllglviglllrlltkft..sgdrelevllvlllallaallaevlglsgilgaflaGlvlseyefsnelseklepfgkflfeplfFvlvGlsldlkvlltnglsllllvllllvaillgkllgvfllsrllglslrealiigflglqrgavalalaalglslglisrelfalllavvlltvlvqGltl 378
                  ll+ +a+++++ ++ l+l +++g+++aG++lGp glg+v +   +++e l+elg++++lF++Glel++++l+ ++k i+ l+l+++ ++ ++++++l     i    l++a+++g +l++++ ++vl++l+++ ++ +++g+  lg+++l+D+++v+ll++++ la +ea++   +g l+++++ +++ +l++  v++ +l    +++   g++e +++++ll +l++++++ ++gls+ lgaflaG++lse+++s ++++++ pf+ +++++lfFv+vG s+d+k +    l  +llvl l+  + + k+ +  ll+ +l+++l++a+  gfl++q g++ +++++l+++ gl+s+el +ll+++v +++       
  MMETSP0890-20130614|35219_1  24 LLLTTATVIPF-VKALGLSPILGFLAAGVALGPQGLGVVTEL--STTEALAELGVVFFLFEMGLELSIEKLQAMRKEIFGLGLAQFGLTSAGLAAILCS---I--CGLKAAIIVGGALALSSSAFVLQLLRDKDELGTSHGRASLGVLLLQDLAVVPLLVLTPLLA-QEASTKVFVGALVAAAIKAIGAVLAVEMVFKKILDKAFARAtmAGSQEAFLAVALLAVLGVSAFTASIGLSDTLGAFLAGIALSETRYSRKVEADVAPFR-GMLLGLFFVTVGFSMDVKQI----LATPLLVLSLAGGLCVFKATVLGLLAIVLKVPLSSAIRSGFLLAQGGEFGFVAFGLAERFGLLSAELAKLLVTTVAVSMA-----A 382
                  66777777777.******************************..************************************************8888884...3..4689********************************************************9.66777777777777777777777788877777776655555578********************************************************.****************8888....6666666666666668**************************************************************98.....3 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   2.3e-24   1.1e-20       1     112 [.     467     583 ..     467     586 .. 0.92

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 2.3e-24
                  EEEE---HHHHHHHCCCHH--..EEEEES-HHHHHHHHH---EEEE--TTSHHHHHHTT-----EEEE--SSH.HHHHHHHHHHCCC-TT....SEEEEEESSGGGHHHHHH----E CS
   PF02254.13   1 iiiiGlGrvGrslaeeLregekdvvvidkdeerveelreeglevvvgdatdeevLeeagieeadaviaatgdd.eanllavllakelnpk....kkiiaraqdeenakllkklgade 112
                  +i++G+Gr+G+ ++e+L ++ +++vv+++de+++ ++reeg +v+vgd t++++L+e   ++a++v++a+ d  ++n l+v+l + ++++    ++iiara d ++ ++l + g+ +
  MMETSP0890-20130614|35219_1 467 VIVVGYGRLGKVVCELLDAKLHRYVVVERDEATAIKAREEGRPVFVGDFTQPQTLDEFRCSSARLVVIACTDLrATNSLVVALRRLIRENdgigPEIIARAADISHRRHLLRNGVKV 583
                  79*****************5557*****************************************9999988887999999888888777788999***************9999865 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.12      26      69 ..     467     510 ..     455     539 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.7e-05
                  EEEE---------HHHHHH---EEEE--S-HHHHHHHHC---EE CS
   PF00670.16  26 avvaGyGdvGkGcaaslkalGarvivtevdPicalqaameGfev 69 
                  ++v+GyG +Gk  ++ l a+  r +v e d  +a++a  eG  v
  MMETSP0890-20130614|35219_1 467 VIVVGYGRLGKVVCELLDAKLHRYVVVERDEATAIKAREEGRPV 510
                  89***********************************9999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.52s 00:00:01.41 Elapsed: 00:00:01.14
# Mc/sec: 1514.91
//
Query:       MMETSP0890-20130614|35217_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   50.4   0.0    3.8e-13   49.1   0.0    1.7  1  PF01454.14 MAGE family
  ------ inclusion threshold ------
      0.022   14.0   3.4      0.022   14.0   2.4    2.5  3  PF12196.3  FHA Ki67 binding domain of hNIFK
       0.96    8.5   7.9      0.066   12.3   1.2    2.0  2  PF04104.9  Eukaryotic and archaeal DNA primase, large subunit
        4.3    5.1  19.4       0.33    8.8   3.5    2.1  2  PF02724.9  CDC45-like protein


Domain annotation for each model (and alignments):
>> PF01454.14  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.1e-16   3.8e-13       1     193 [.     110     301 ..     110     303 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.1e-16
   PF01454.14   1 lVrflLskeekkepIrrteilkqvlkeykrkf.pevfaraqeiLeevFGleLveidakkkedstedkkekretgsksYiLvsklplkkiealaepaklpkelaktGlltviL.slillsgnsiseeeLwelLrrl..glsege........khtvlgleskkllleelvkqeYLekykqvpesdpeeeeflwkvGpRakaEfske 193
                  + r+lL +  kk+pI r+++   + +  k k+ + v+ +aq+ L+ ++G+++v  ++k+     ++k e + + ++s+ Lv   +++   al  p+  + e     +l+ i  ++i  +++++++ +L ++L+ l  +++++         + t+lg +  +l+ ++ ++++YL k     e  ++++  ++ +GpRa + +  +
  MMETSP0890-20130614|35217_1 110 MTRYLLLHGSKKIPIDRKKLGDIMGEYKKSKItKFVLGEAQRLLRSIWGYDIVPAPPKR-----NQKVEWSAKWRDSFFLVRRQQSPAHVALLAPHVSDDEKRERAFLMCIFaCIISAHDHKLRDRDLFKYLNHLdpNIPRDPpsgpkkeiHVTNLG-NLSDLF-DRAINYGYLLK-----E-VDTHNDTIYALGPRAMVDVGRN 301
                  569**************998776666666676799***********************3.....344567778899*******99998888777777777777788888887367789999**************5556655235555544555666.677777.99*******44.....3.45555557*******9988766 PP

>> PF12196.3  FHA Ki67 binding domain of hNIFK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.77   2.6e+03      20      35 ..      11      26 ..       9      27 .. 0.48
   2 ?   14.0   2.4   6.4e-06     0.022      17      36 ..      32      53 ..      29      57 .. 0.80
   3 ?   -4.4   1.8       3.5   1.2e+04      29      34 ..     331     336 ..     324     337 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.77
    PF12196.3 20 KSqvlElndddkDDEi 35
                  Sq l  +d  +  Ei
  MMETSP0890-20130614|35217_1 11 GSQALVSDDVSDEEEI 26
                 5666653444334445 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 6.4e-06
    PF12196.3 17 ER..RKSqvlElndddkDDEiv 36
                 ER  +KSq +  +ddd+DDE+v
  MMETSP0890-20130614|35217_1 32 ERklKKSQQMLEDDDDDDDEVV 53
                 663359*99877*********9 PP

  == domain 3    score: -4.4 bits;  conditional E-value: 3.5
    PF12196.3  29 ddkDDE 34 
                  dd DDE
  MMETSP0890-20130614|35217_1 331 DDSDDE 336
                  667887 PP

>> PF04104.9  Eukaryotic and archaeal DNA primase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   1.9e-05     0.066      32     102 ..      22     105 ..       9     113 .. 0.80
   2 ?   -1.1   0.3      0.24   8.1e+02      32      96 ..     307     369 ..     280     383 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.9e-05
                  HH---HHHHHHHHHHH..........HCCCCHSS---HHHHHHHH---..........................TTSSTTGGSH CS
    PF04104.9  32 eleslllekfrkrlekalestkeslpeleeeieederekleelleelsesyvaed.............vqeeedskisaknidk 102
                  + e++++ +++++l+k+ ++++  +++ +e+++e++r+k++ ++++++++y++++             ++e++++k+ +++i+k
  MMETSP0890-20130614|35217_1  22 DEEEIIESAMERKLKKSQQMLEDDDDDDDEVVHESKRRKFKLYQDSFTKEYISDPvrsakaifedvtkSEEDKAAKLAPEEIKK 105
                  557999************************************************987666555555544444445555555444 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.24
                  HH---HHHHHHHHHHH..........HCCCCHSS---HHHHHHHH---..............TTSS CS
    PF04104.9  32 eleslllekfrkrlekalestkeslpeleeeieederekleelleelsesyvaed.vqeeedskis 96 
                  ++ +l  e+  + + k+++  ++ +++ +e  +e+e+   ++  ++ +++ ++++  +++e+++ +
  MMETSP0890-20130614|35217_1 307 QADALGHESLDNAILKEMQDNAKIDDSDDEDSQEEEE--QQPPPKKSKDA-TEKKgAKQSEKAAAK 369
                  5555555555666666666555554433222222222..33333333312.222233333333333 PP

>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.5    0.0071        24     134     184 ..      12      62 ..       1     115 [. 0.55
   2 ?    8.8   3.5   9.7e-05      0.33     123     183 ..     322     381 ..     259     386 .] 0.53

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0071
    PF02724.9 134 esdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnes 184
                  +++  sd+ +deee  +sa e++ ++s++  edddd++de + + kr++ +
  MMETSP0890-20130614|35217_1  12 SQALVSDDVSDEEEIIESAMERKLKKSQQMLEDDDDDDDEVVHESKRRKFK 62 
                  444445555666555555555444555555555555555555555555442 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 9.7e-05
    PF02724.9 123 alvemkeeee.eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsne 183
                  +  em+++ + ++sd+++++e++e++++ ++s++  +++  +++++   + + +++ k++++
  MMETSP0890-20130614|35217_1 322 K--EMQDNAKiDDSDDEDSQEEEEQQPPPKKSKDATEKKGAKQSEKAAAKAQAVTSTKKKKT 381
                  2..23333332333333333333333333333322222222222222222222333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1441  (0.105398); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.37s 00:00:01.24 Elapsed: 00:00:00.65
# Mc/sec: 1423.07
//
Query:       MMETSP0890-20130614|35221_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-27   92.5   0.7    2.5e-13   49.4   0.1    2.3  2  PF00313.17 'Cold-shock' DNA-binding domain
    3.1e-07   29.6   6.2     0.0001   21.6   0.0    2.9  3  PF08206.6  Ribonuclease B OB domain
     0.0089   15.8   0.2       0.02   14.6   0.2    1.6  1  PF13509.1  S1 domain


Domain annotation for each model (and alignments):
>> PF00313.17  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   5.4e-17   2.5e-13       2      65 ..      56     115 ..      55     116 .. 0.95
   2 !   41.6   0.0   1.5e-14     7e-11       2      65 ..     208     270 ..     207     271 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 5.4e-17
                  ---B----S..----B--------BB--TTT----T.TS------EEEEE-------BEEEEEE CS
   PF00313.17   2 tGtVkwfnakkgfGFItredgekdvFvHqsaiqkdgfrsLkeGqeVeFevvegekgpeAanVtk 65 
                  +G++ wf +kk++GF++ +d++ d+FvH + ++++      eG+ Ve++++e++++ +A++V k
  MMETSP0890-20130614|35221_1  56 RGVCRWFLEKKNYGFVSSNDENGDIFVHSKDLKEKI----VEGDLVEYTLKESDGRLKAIEVIK 115
                  79****************************999888....9*********************87 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 1.5e-14
                  ---B----S..----B-------.-BB--TTT----T.TS------EEEEE-------BEEEEEE CS
   PF00313.17   2 tGtVkwfnakkgfGFItredgek.dvFvHqsaiqkdgfrsLkeGqeVeFevvegekgpeAanVtk 65 
                  tG+V w+ +kk+ GFI+++  +  d+FvH   i++    s++e+++Ve+ v e +++ +A++V +
  MMETSP0890-20130614|35221_1 208 TGSVLWYTSKKKHGFIKPDAPNVaDIFVHALDIREGY--SIAEDDRVEYGVGEFQGRSKATDVIQ 270
                  8*****************997766***********99..***********************975 PP

>> PF08206.6  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.7       2.2     1e+04      45      55 ..       6      16 ..       4      19 .. 0.55
   2 !   21.6   0.0   2.2e-08    0.0001       6      50 ..      64     109 ..      59     116 .. 0.85
   3 !   11.0   0.0   4.6e-05      0.21       6      30 ..     216     241 ..     214     266 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.2
    PF08206.6 45 gdrrgrregri 55
                 +++r+rr++++
  MMETSP0890-20130614|35221_1  6 TRERKRRQQQE 16
                 45566665554 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 2.2e-08
    PF08206.6   6 hkkGFGFvipDdgeeDifippeqmk.kamhGDrVlvritkgdrrgr 50 
                   kk +GFv+  d+  Dif++++++k k+  GD V  +++++d r +
  MMETSP0890-20130614|35221_1  64 EKKNYGFVSSNDENGDIFVHSKDLKeKIVEGDLVEYTLKESDGRLK 109
                  6899********************94688******99988777765 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 4.6e-05
    PF08206.6   6 hkkGFGFvipDd.geeDifippeqmk 30 
                  +kk +GF++pD  +  Dif+++ +++
  MMETSP0890-20130614|35221_1 216 SKKKHGFIKPDApNVADIFVHALDIR 241
                  699*****************987765 PP

>> PF13509.1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   4.3e-06      0.02      11      45 ..      64      98 ..      63     110 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.3e-06
    PF13509.1 11 retefgffLdggengevlLpkkevpeeleiGDeve 45
                 +++++gf+ +++eng+++ ++k+++e++  GD ve
  MMETSP0890-20130614|35221_1 64 EKKNYGFVSSNDENGDIFVHSKDLKEKIVEGDLVE 98
                 7899****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 948.56
//
Query:       MMETSP0890-20130614|35220_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-35  122.8   0.0    2.2e-35  122.0   0.0    1.3  1  PF00160.16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
    5.3e-27   93.5   0.0    1.2e-26   92.3   0.0    1.6  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    4.9e-09   35.5   1.5     0.0016   17.9   0.0    2.8  3  PF13414.1  TPR repeat
    5.8e-08   31.9   1.1      0.038   13.7   0.0    3.6  3  PF07719.12 Tetratricopeptide repeat
    5.3e-05   22.5   0.7      0.041   13.3   0.0    2.7  2  PF00515.23 Tetratricopeptide repeat
    0.00018   21.9   1.5      0.015   15.8   0.3    2.6  2  PF13432.1  Tetratricopeptide repeat
     0.0012   18.6   0.1        1.4    8.7   0.0    2.8  2  PF13424.1  Tetratricopeptide repeat
     0.0019   17.9   0.0        1.4    8.7   0.0    2.5  2  PF13371.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.0   0.1        5.4    6.9   0.1    2.8  2  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF00160.16  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   1.4e-38   2.2e-35       4     154 ..     333     491 ..     330     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 122.0 bits;  conditional E-value: 1.4e-38
   PF00160.16   4 ietsskGrivieLfedkaPktvenFlklak..eg.........fYdgtkfhrvikgfmiqgGdpsgkgangeekkaggesipdEikkkklkh.krGalamartgpepnsngsqFfItlgdaphlDgkytvFGkVvegmdvvekiea...vetdekpeknvkiksvg 154
                  +++   G +v+ +f+d++P+t++nFl l++  +g         +Y+++ ++rv+++f iq+Gd+   +  ++++   g  ++dE+  +k  h ++G+lama++g   nsn sqFfItl++a+h Dg+ ++FG+Vv g+d++++i++    +  ++p+++++i+++g
  MMETSP0890-20130614|35220_1 333 TKI--DGIVVLRVFADACPRTARNFLALCTgeRGiskisgkrlHYKNCLVTRVVPNFCIQTGDFICGDG-SSGESIYGPFFDDEH--FKIPHdRPGVLAMANKG--TNSNASQFFITLDEAHHCDGSDVAFGHVVVGLDIIKAIAQlscLPDTQRPTQDIRIVDCG 491
                  334..699*********************86611666666777********************766544.222223333499999..45566478******998..5*******************99******************776333449**********8 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   8.1e-30   1.2e-26       5      94 .]      30     121 ..      27     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 8.1e-30
                  --CT-EEEEEEEEEE.-...--EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23   5 akegdtVtvhyegkled...gtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                  ++ gd V+vhy g+l++    + fd+sy+r++p++f +G+g vi g+e g+  m  Gek+ l+i pe++Yge+g  ++ ip +atlvfevel+
  MMETSP0890-20130614|35220_1  30 PSYGDEVKVHYYGYLKGlskEQAFDNSYDRGQPLSFVLGEGMVISGWEIGVGHMALGEKAVLEIGPEYGYGENGQ-PPAIPGGATLVFEVELV 121
                  6779***********53445999***************************************************9.889************96 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.1e-06    0.0078       5      33 ..     144     172 ..     141     192 .. 0.90
   2 !   17.9   0.0   1.1e-06    0.0016      12      69 .]     202     263 ..     200     263 .. 0.89
   3 ?   -2.1   0.0       1.8   2.7e+03      33      53 ..     494     515 ..     492     518 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.1e-06
    PF13414.1   5 alkelGnalfkegdydeAieayekAleld 33 
                  ++ke G  lfk+g++ +A++++++A++++
  MMETSP0890-20130614|35220_1 144 KYKESGLLLFKRGEWIKALAEFQEAVKYC 172
                  79************************986 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.1e-06
    PF13414.1  12 alfkegdydeAieayekAleldpnn.....aelyynlAlaylklgkdyeeAledyekAleldP 69 
                  ++++++d+  A  + ++ l+l p+      a+++++++ a  ++g   +eA  d+ +A +l P
  MMETSP0890-20130614|35220_1 202 CCLNAKDWPSANSFATQVLKLLPQAdvvarAKAHFRRGVARSHMG-LLDEAKSDLLLAAKLEP 263
                  7899*******************943444466*************.99**********99988 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.8
    PF13414.1  33 dpnnaely.ynlAlaylklgkd 53 
                  ++++ae+y ++ A++ +++++d
  MMETSP0890-20130614|35220_1 494 SKSDAEAYiAAAAQTRMEQNDD 515
                  6778888834467777777655 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   4.9e-05     0.074       8      30 ..     149     171 ..     145     173 .. 0.91
   2 ?    1.7   0.0      0.18   2.7e+02      10      33 ..     202     225 ..     201     226 .. 0.92
   3 !   13.7   0.0   2.5e-05     0.038       1      33 [.     232     264 ..     232     265 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.9e-05
                  HHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   8 GlayyklgdyeeAleafekAlel 30 
                  Gl+++k+g++ +Al+ f++A+++
  MMETSP0890-20130614|35220_1 149 GLLLFKRGEWIKALAEFQEAVKY 171
                  999******************97 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.18
                  HHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  10 ayyklgdyeeAleafekAleldPn 33 
                  ++++++d+  A  +  ++l+l P+
  MMETSP0890-20130614|35220_1 202 CCLNAKDWPSANSFATQVLKLLPQ 225
                  78999****************997 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 2.5e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                  a+a++++G a  ++g ++eA+ ++  A +l+P+
  MMETSP0890-20130614|35220_1 232 AKAHFRRGVARSHMGLLDEAKSDLLLAAKLEPK 264
                  79*****************************96 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2    0.0035       5.3       8      29 ..     149     170 ..     145     172 .. 0.90
   2 !   13.3   0.0   2.7e-05     0.041       1      33 [.     232     264 ..     232     264 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0035
                  HHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23   8 GnaylklgkydeAleyyekALe 29 
                  G++++k g++ +Al+ +++A++
  MMETSP0890-20130614|35220_1 149 GLLLFKRGEWIKALAEFQEAVK 170
                  99******************87 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.7e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                  aka++++G+a  ++g +deA  +   A +l+P+
  MMETSP0890-20130614|35220_1 232 AKAHFRRGVARSHMGLLDEAKSDLLLAAKLEPK 264
                  89**********************999999996 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.037        57       4      26 ..     149     171 ..     147     171 .. 0.91
   2 !   15.8   0.3   9.9e-06     0.015       9      63 ..     205     264 ..     204     266 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.037
    PF13432.1   4 ArallraGdydeAlaaleaalal 26 
                  +++l+++G++ +Ala +++a+++
  MMETSP0890-20130614|35220_1 149 GLLLFKRGEWIKALAEFQEAVKY 171
                  7899****************985 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 9.9e-06
    PF13432.1   9 raGdydeAlaaleaalalaPe.....aaeallllaeallrlgrldeAa.allraalalaPd 63 
                  +a+d+  A     ++l+l P+      a a++++++a  ++g ldeA   ll aa +l P+
  MMETSP0890-20130614|35220_1 205 NAKDWPSANSFATQVLKLLPQadvvaRAKAHFRRGVARSHMGLLDEAKsDLLLAA-KLEPK 264
                  6788888888999******9999999**********************9999998.88886 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00092       1.4      12      36 ..     149     173 ..     142     197 .. 0.78
   2 !    6.8   0.0    0.0036       5.5      13      74 ..     201     260 ..     190     264 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00092
    PF13424.1  12 alvlrrlgdydeAlelyekalellr 36 
                  +l+l++ g++ +Al+ +++a++ + 
  MMETSP0890-20130614|35220_1 149 GLLLFKRGEWIKALAEFQEAVKYCD 173
                  78999****************9853 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0036
    PF13424.1  13 lvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAle 74 
                  l+++  +d+ +A ++  ++l+ll ++      +a+a +  + +  ++g +deA+  l  A +
  MMETSP0890-20130614|35220_1 201 LCCLNAKDWPSANSFATQVLKLLPQAD--VVARAKAHFRRGVARSHMGLLDEAKSDLLLAAK 260
                  466789999999999999999987774..445699999999999999999999876666655 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0045       6.9      33      60 ..     146     173 ..     142     188 .. 0.86
   2 !    8.7   0.0   0.00094       1.4       6      66 ..     204     273 ..     200     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0045
    PF13371.1  33 RDrGlllaqlgclaaAaedLeaflelcp 60 
                   + Glll+++g++  A+++++ +++ c+
  MMETSP0890-20130614|35220_1 146 KESGLLLFKRGEWIKALAEFQEAVKYCD 173
                  678******************9998775 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00094
    PF13371.1   6 lreedferALavverllllaPd.....dpyerRDrGlllaqlgclaaAaedLeaflelcp....dapdae 66 
                  l+++d+++A   +  +l l P+     ++  +  rG ++ ++g l +A  dL  +++l+p     + +  
  MMETSP0890-20130614|35220_1 204 LNAKDWPSANSFATQVLKLLPQadvvaRAKAHFRRGVARSHMGLLDEAKSDLLLAAKLEPktrsIRNELN 273
                  7899999999999999999999999999999************************999996555555555 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0035       5.4       8      30 ..     149     171 ..     145     173 .. 0.91
   2 ?    4.9   0.0     0.015        23       1      32 [.     232     263 ..     232     265 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0035
                  --HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   8 GdiYrqlGdydkAkeylekalel 30 
                  G+++++ G++ kA++ +++a+++
  MMETSP0890-20130614|35220_1 149 GLLLFKRGEWIKALAEFQEAVKY 171
                  8899999***************9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.015
                  ---TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalelkp 32 
                  aka++++G +   +G  d+Ak+ l  a +l p
  MMETSP0890-20130614|35220_1 232 AKAHFRRGVARSHMGLLDEAKSDLLLAAKLEP 263
                  589999**********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.92u 0.44s 00:00:01.36 Elapsed: 00:00:00.91
# Mc/sec: 1422.01
//
Query:       MMETSP0890-20130614|35224_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.34s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|35222_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.035   13.3   0.0      0.059   12.6   0.0    1.3  1  PF03185.10 Calcium-activated potassium channel, beta subunit


Domain annotation for each model (and alignments):
>> PF03185.10  Calcium-activated potassium channel, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-06     0.059      89     138 ..     232     281 ..     230     301 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-06
   PF03185.10  89 lsesgrkalLhhdeetletnpkCsYvPkckkdsqelrasveeikenfkke 138
                  ls sg++  L+ +ee  +tn++ +Y P+  kds+++   v + k  f+++
  MMETSP0890-20130614|35222_1 232 LSYSGQNFRLKAKEEGSNTNHRWFYFPNMDKDSEAIIFLVYDSKPTFDSH 281
                  6889********************************99999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 1236.83
//
Query:       MMETSP0890-20130614|35225_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       588  (0.0430076); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.99
# Mc/sec: 910.13
//
Query:       MMETSP0890-20130614|35226_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.1  18.8    0.00023   20.5   0.0    5.8  5  PF12799.2  Leucine Rich repeats (2 copies)
      6e-12   45.0  22.5    5.5e-06   25.9   1.6    4.6  5  PF13855.1  Leucine rich repeat
    5.1e-10   37.8  25.3        2.8    8.1   0.0   10.4 10  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.13   12.2  24.1         23    5.3   1.1    8.4  9  PF13516.1  Leucine Rich repeat
       0.88    9.9  21.1        8.2    7.0   0.1    8.7  8  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   4.9e-06     0.013       5      38 ..     360     394 ..     353     400 .. 0.85
   2 !   16.6   1.8   1.4e-06     0.004       2      37 ..     405     441 ..     404     449 .. 0.92
   3 !   18.2   0.2   4.4e-07    0.0012       2      40 ..     453     492 ..     452     497 .. 0.90
   4 !   20.5   0.0   8.6e-08   0.00023       1      39 [.     500     539 ..     500     547 .. 0.87
   5 ?   -0.9   0.0      0.45   1.2e+03      28      37 ..     556     565 ..     555     573 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.9e-06
    PF12799.2   5 vLdLsnNnIk.dlppelanLpnLktLnLsnNpisd 38 
                  +    nN+I+ +lp ++   ++Lk +nL+nN ++ 
  MMETSP0890-20130614|35226_1 360 YFEMPNNRISgNLPQHFFASTSLKKINLNNNFLQG 394
                  445789****99*******************9975 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.4e-06
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis 37 
                  nL+++ LsnN +  dl   +anLp+ +t+nL+ N+++
  MMETSP0890-20130614|35226_1 405 NLKSIHLSNNMLNgDLTCLFANLPQVQTINLAQNNFD 441
                  9***********999***89************99985 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 4.4e-07
    PF12799.2   2 nLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dls 40 
                  nL +L+L ++ I   l++ l +Lp L+t +Ls+N ++ +ls
  MMETSP0890-20130614|35226_1 453 NLAELYLERSGIHgTLDH-LTQLPLLTTVDLSHNFLTgSLS 492
                  999*********978***.****************985565 PP

  == domain 4    score: 20.5 bits;  conditional E-value: 8.6e-08
    PF12799.2   1 tnLevLdLsnNnIk.dlppelanLpnLktLnLsnNpis.dl 39 
                  + L  LdLs N ++ +lp  +a   nL+  +Ls+N++s ++
  MMETSP0890-20130614|35226_1 500 PRLYRLDLSWNDLSgSLPS-FAEADNLRRVDLSHNKFSgEM 539
                  57899*********88999.****************98444 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.45
    PF12799.2  28 tLnLsnNpis 37 
                  +L+Ls+N ++
  MMETSP0890-20130614|35226_1 556 SLDLSSNFFC 565
                  6999999875 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   7.2e-05       0.2       2      40 ..     357     395 ..     356     399 .. 0.81
   2 !   19.8   5.4   1.6e-07   0.00044       1      61 []     380     440 ..     380     440 .. 0.94
   3 !   25.9   1.6     2e-09   5.5e-06       2      61 .]     453     512 ..     452     512 .. 0.90
   4 ?    2.6   0.0     0.036        99      49      60 ..     523     534 ..     513     539 .. 0.60
   5 ?   -3.6   0.0       3.2   8.7e+03       5      11 ..     556     562 ..     555     564 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.2e-05
    PF13855.1   2 nLkeLdLsnNrlk.vipdgaFkglsnLkvLdLsgnnlksi 40 
                  +L +    nNr++ ++p+++F   ++Lk+++L++n l+ +
  MMETSP0890-20130614|35226_1 357 HLVYFEMPNNRISgNLPQHFFA-STSLKKINLNNNFLQGM 395
                  666777889***9999999999.567*******8877765 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.6e-07
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                  ++Lk+++L+nN l+ + +   +   nLk++ Ls+n l+   +++f++Lp+++ +nL +N++
  MMETSP0890-20130614|35226_1 380 TSLKKINLNNNFLQGMIPCPDQPVLNLKSIHLSNNMLNGDLTCLFANLPQVQTINLAQNNF 440
                  58************99988889999********999999999*****************85 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 2e-09
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlk.sispeafkgLpsLreLnLsgNrl 61 
                  nL eL+L ++ +    d  + +l+ L++ dLs+n l+ s+s+++f+ Lp+L  L+Ls+N+l
  MMETSP0890-20130614|35226_1 453 NLAELYLERSGIHGTLD-HLTQLPLLTTVDLSHNFLTgSLSAQIFNALPRLYRLDLSWNDL 512
                  8999*****99996654.5677**************66*********************97 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.036
    PF13855.1  49 psLreLnLsgNr 60 
                   +Lr ++Ls+N+
  MMETSP0890-20130614|35226_1 523 DNLRRVDLSHNK 534
                  455555555554 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 3.2
    PF13855.1   5 eLdLsnN 11 
                  +LdLs+N
  MMETSP0890-20130614|35226_1 556 SLDLSSN 562
                  3444444 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.22   6.1e+02       2      19 ..     358     377 ..     357     379 .. 0.80
   2 !    5.9   0.1    0.0058        16       1      17 [.     381     398 ..     381     399 .. 0.89
   3 !    5.7   1.2    0.0067        18       1      22 []     405     427 ..     405     427 .. 0.90
   4 ?    2.1   0.0       0.1   2.8e+02       2      18 ..     430     447 ..     429     450 .. 0.85
   5 ?   -2.0   0.0       2.2   6.1e+03       1      17 [.     453     470 ..     453     474 .. 0.75
   6 !    7.8   0.1    0.0013       3.6       2      20 ..     477     497 ..     476     499 .. 0.86
   7 !    8.1   0.0     0.001       2.8       2      19 ..     502     519 ..     501     521 .. 0.89
   8 !    7.0   0.0    0.0025       6.7       1      14 [.     524     538 ..     524     546 .. 0.84
   9 !    5.9   0.1    0.0056        15       4      18 ..     556     571 ..     555     574 .. 0.87
  10 ?    1.5   0.0      0.15   4.2e+02       2      14 ..     583     596 ..     582     618 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.22
                  ESEEEETSSBCB.CHHHH.H CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.l 19 
                  L +  + +N+++ +lp   +
  MMETSP0890-20130614|35226_1 358 LVYFEMPNNRISgNLPQHfF 377
                  77778889********9855 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0058
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  +L++++L++N l+  +p+
  MMETSP0890-20130614|35226_1 381 SLKKINLNNNFLQgMIPC 398
                  69**********977885 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0067
                  TESEEEETSSBCB.CHHHHHHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slppslsnL 22 
                  nL++++Ls+N l  +l + + nL
  MMETSP0890-20130614|35226_1 405 NLKSIHLSNNMLNgDLTCLFANL 427
                  8************9999988876 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.1
                  ESEEEETSSBCB.CHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps 18 
                   ++++L  Nn+  +lp +
  MMETSP0890-20130614|35226_1 430 VQTINLAQNNFDaQLPAE 447
                  689********9889976 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 2.2
                  TESEEEETSSBCB.CHHH CS
   PF00560.28   1 nLeeLdLsgNnlt.slpp 17 
                  nL eL+L +  +  +l +
  MMETSP0890-20130614|35226_1 453 NLAELYLERSGIHgTLDH 470
                  7899**999888766655 PP

  == domain 6    score: 7.8 bits;  conditional E-value: 0.0013
                  ESEEEETSSBCB.CHHHH.HH CS
   PF00560.28   2 LeeLdLsgNnlt.slpps.ls 20 
                  L++ dLs+N lt sl+   + 
  MMETSP0890-20130614|35226_1 477 LTTVDLSHNFLTgSLSAQiFN 497
                  899*********999988665 PP

  == domain 7    score: 8.1 bits;  conditional E-value: 0.001
                  ESEEEETSSBCB.CHHHHH CS
   PF00560.28   2 LeeLdLsgNnlt.slppsl 19 
                  L +LdLs N l+ slp+ +
  MMETSP0890-20130614|35226_1 502 LYRLDLSWNDLSgSLPS-F 519
                  789*************9.7 PP

  == domain 8    score: 7.0 bits;  conditional E-value: 0.0025
                  TESEEEETSSBCB.C CS
   PF00560.28   1 nLeeLdLsgNnlt.s 14 
                  nL++ dLs+N+++ +
  MMETSP0890-20130614|35226_1 524 NLRRVDLSHNKFSgE 538
                  8*********99855 PP

  == domain 9    score: 5.9 bits;  conditional E-value: 0.0056
                  EEEETSSBCB.CHHHH CS
   PF00560.28   4 eLdLsgNnlt.slpps 18 
                  +LdLs+N ++ +lp+ 
  MMETSP0890-20130614|35226_1 556 SLDLSSNFFCgQLPEL 571
                  69********99*984 PP

  == domain 10    score: 1.5 bits;  conditional E-value: 0.15
                  ESEEEETSSBCB.C CS
   PF00560.28   2 LeeLdLsgNnlt.s 14 
                  L   d+sgN++  s
  MMETSP0890-20130614|35226_1 583 LAFFDVSGNHFRcS 596
                  6789*****88735 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.4e+04       6      17 ..     360     371 ..     355     375 .. 0.54
   2 ?    1.1   0.4      0.19   5.1e+02       2      14 ..     380     392 ..     379     395 .. 0.87
   3 ?    5.3   1.1    0.0085        23       3      23 ..     405     425 ..     405     426 .. 0.83
   4 ?    2.9   0.0      0.05   1.4e+02       1      22 [.     427     448 ..     427     456 .. 0.82
   5 ?   -2.6   0.0         3   8.2e+03       2      15 ..     452     465 ..     451     467 .. 0.83
   6 ?    4.6   0.1     0.014        39       2      16 ..     475     489 ..     474     497 .. 0.83
   7 ?    2.5   0.0      0.07   1.9e+02       3      16 ..     501     514 ..     499     520 .. 0.78
   8 ?    3.3   0.0     0.038     1e+02       3      16 ..     524     537 ..     523     538 .. 0.89
   9 ?    0.9   0.0      0.23   6.3e+02       6      15 ..     556     565 ..     555     571 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 5
    PF13516.1   6 sLdLsnNqigde 17 
                  ++ + nN i+++
  MMETSP0890-20130614|35226_1 360 YFEMPNNRISGN 371
                  444447777765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.19
    PF13516.1   2 knLtsLdLsnNqi 14 
                  ++L+ ++L+nN +
  MMETSP0890-20130614|35226_1 380 TSLKKINLNNNFL 392
                  79*********76 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0085
    PF13516.1   3 nLtsLdLsnNqigdeGlsaLa 23 
                  nL+s++LsnN + ++  + +a
  MMETSP0890-20130614|35226_1 405 NLKSIHLSNNMLNGDLTCLFA 425
                  8**********9888766555 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.05
    PF13516.1   1 lknLtsLdLsnNqigdeGlsaL 22 
                  l++ ++++L +N+++ +    +
  MMETSP0890-20130614|35226_1 427 LPQVQTINLAQNNFDAQLPAEI 448
                  6899*********998877544 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 3
    PF13516.1   2 knLtsLdLsnNqig 15 
                  +nL +L L + +i+
  MMETSP0890-20130614|35226_1 452 QNLAELYLERSGIH 465
                  79999**9998886 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.014
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  + Lt+ dLs+N +++
  MMETSP0890-20130614|35226_1 475 PLLTTVDLSHNFLTG 489
                  679********9986 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.07
    PF13516.1   3 nLtsLdLsnNqigd 16 
                   L  LdLs N++++
  MMETSP0890-20130614|35226_1 501 RLYRLDLSWNDLSG 514
                  5667*******986 PP

  == domain 8    score: 3.3 bits;  conditional E-value: 0.038
    PF13516.1   3 nLtsLdLsnNqigd 16 
                  nL+  dLs+N++++
  MMETSP0890-20130614|35226_1 524 NLRRVDLSHNKFSG 537
                  89999******986 PP

  == domain 9    score: 0.9 bits;  conditional E-value: 0.23
    PF13516.1   6 sLdLsnNqig 15 
                  sLdLs+N + 
  MMETSP0890-20130614|35226_1 556 SLDLSSNFFC 565
                  8******765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.15     4e+02       1      14 [.     380     393 ..     380     397 .. 0.85
   2 ?    1.1   0.6      0.26   7.2e+02       2      14 ..     405     417 ..     405     428 .. 0.73
   3 ?   -2.6   0.0       4.3   1.2e+04       3      17 .]     430     445 ..     426     445 .. 0.73
   4 ?    2.2   0.4      0.11     3e+02      13      17 .]     471     475 ..     452     492 .. 0.51
   5 ?    7.0   0.1     0.003       8.2       1      17 []     500     517 ..     500     517 .. 0.83
   6 ?    1.3   0.0      0.22   6.1e+02       2      13 ..     524     535 ..     523     544 .. 0.87
   7 ?   -0.0   0.1      0.63   1.7e+03       5      17 .]     556     569 ..     555     569 .. 0.74
   8 ?    0.6   0.0       0.4   1.1e+03       2      14 ..     582     594 ..     581     596 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.15
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  ++Lk+ +L++n L+
  MMETSP0890-20130614|35226_1 380 TSLKKINLNNNFLQ 393
                  69*********986 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.26
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  nLk  +Ls+n L+
  MMETSP0890-20130614|35226_1 405 NLKSIHLSNNMLN 417
                  8999*****8543 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 4.3
    PF13504.1   3 LkeLdLsgnrLt.sLP 17 
                   ++ +L+ n+++ +LP
  MMETSP0890-20130614|35226_1 430 VQTINLAQNNFDaQLP 445
                  5778999999863576 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.11
    PF13504.1  13 LtsLP 17 
                  Lt+LP
  MMETSP0890-20130614|35226_1 471 LTQLP 475
                  44444 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.003
    PF13504.1   1 pnLkeLdLsgnrLt.sLP 17 
                  p+L +LdLs+n+L  sLP
  MMETSP0890-20130614|35226_1 500 PRLYRLDLSWNDLSgSLP 517
                  799*********963576 PP

  == domain 6    score: 1.3 bits;  conditional E-value: 0.22
    PF13504.1   2 nLkeLdLsgnrL 13 
                  nL++ dLs+n++
  MMETSP0890-20130614|35226_1 524 NLRRVDLSHNKF 535
                  89999*****87 PP

  == domain 7    score: -0.0 bits;  conditional E-value: 0.63
    PF13504.1   5 eLdLsgnrL.tsLP 17 
                   LdLs+n +  +LP
  MMETSP0890-20130614|35226_1 556 SLDLSSNFFcGQLP 569
                  59*****8624676 PP

  == domain 8    score: 0.6 bits;  conditional E-value: 0.4
    PF13504.1   2 nLkeLdLsgnrLt 14 
                  +L + d+sgn++ 
  MMETSP0890-20130614|35226_1 582 HLAFFDVSGNHFR 594
                  79999*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.39s 00:00:01.60 Elapsed: 00:00:01.11
# Mc/sec: 1761.65
//
Query:       MMETSP0890-20130614|35228_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-47  158.5   0.6    1.2e-46  158.2   0.4    1.1  1  PF08719.6 Domain of unknown function (DUF1768)


Domain annotation for each model (and alignments):
>> PF08719.6  Domain of unknown function (DUF1768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.4   8.5e-51   1.2e-46       2     156 ..      47     206 ..      46     207 .. 0.96

  Alignments for each domain:
  == domain 1    score: 158.2 bits;  conditional E-value: 8.5e-51
    PF08719.6   2 yFyraee..eygilSnlypsp...ftvdgvkfptaehymqaqKallfedeeaaakila.aespkeakklgrkvpnfdearkdWekvkeevvvegllakfeqneelrelLlsTgdrelveaspsDrvWGiglnaesa.ildeenwrGkNlLGkalmevReelr 156
                  +F+r +e  ey  +S++y  p   f+++g +f +ae++m+a Ka+lf+d e+ ++i++ ++sp+  k+lgrkv+nfd ++  W++++ e+v+e+ +akf+qne+l++lLls+gd++l easp+D+vWGigl+a+++ +++ ++w G+N LG alm++R+ +r
  MMETSP0890-20130614|35228_1  47 FFWRDTEdeEYREFSQWYSEPdgyFEFQGETFFCAEQAMMASKAKLFNDYEIRTEIMKeKRSPRRCKELGRKVKNFDIEK--WDTKSLEIVTEISYAKFSQNERLKRLLLSSGDKILAEASPYDKVWGIGLKASDPrAHNCKTWCGENKLGIALMNARQMIR 206
                  8***99999**********9977789*******************************9456***************9999..**************************************************999999999*****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1041.68
//
Query:       MMETSP0890-20130614|35229_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   14.3   0.7      0.053   13.6   0.5    1.4  1  PF01159.14 Ribosomal protein L6e
      0.049   13.3   2.0      0.068   12.8   1.4    1.3  1  PF00430.13 ATP synthase B/B' CF(0)
       0.37   11.0   3.2        1.1    9.6   2.2    1.8  1  PF05957.8  Bacterial protein of unknown function (DUF883)
        0.7   10.0   4.9        2.1    8.5   1.3    2.4  2  PF07554.8  Uncharacterised Sugar-binding Domain
        2.6    8.3   6.0         11    6.3   4.2    2.0  1  PF12732.2  YtxH-like protein


Domain annotation for each model (and alignments):
>> PF01159.14  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5   1.9e-05     0.053      10      79 ..      54     134 ..      46     149 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-05
   PF01159.14  10 nqrYviaTstkvdisevdvpeklddeyFkkekkkkkk..........kseeeffaekke.kkelkekrkadqkavDkalla 79 
                  +++Y+ +T tk+d s v+ +++ + ey +  k+k +k            +++f ++k++  + +++++ + q+ vD+a   
  MMETSP0890-20130614|35229_1  54 ESTYITPTLTKLDSSYVNPAATKTVEYAESVKAKCAKtadglgsrpeDAKQKFSQAKAKaAQVVESTKTTVQSYVDEAKDV 134
                  689***************777777777776664444444566665545666788866663566666666679999987554 PP

>> PF00430.13  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.4   2.5e-05     0.068      47      87 ..      93     133 ..      79     153 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
   PF00430.13  47 keaaellaeaeqqleqArkeaseiienakkeaqklkeeila 87 
                  +   ++ ++a+q+++qA+++a++++e +k++ q  ++e+++
  MMETSP0890-20130614|35229_1  93 DGLGSRPEDAKQKFSQAKAKAAQVVESTKTTVQSYVDEAKD 133
                  555567789************************99999876 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.2   0.00039       1.1      21      70 ..      73     125 ..      60     154 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00039
    PF05957.8  21 aadeageeaeelReraeealerarerlrdaeda...vrerakeaaeaadeyVr 70 
                  aa ++ e+ae+++++  ++++ + +r +da+++   ++++a +++e++++ V+
  MMETSP0890-20130614|35229_1  73 AATKTVEYAESVKAKCAKTADGLGSRPEDAKQKfsqAKAKAAQVVESTKTTVQ 125
                  66677777777777777777777666666665544466666666666666665 PP

>> PF07554.8  Uncharacterised Sugar-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.3   0.00077       2.1      18      46 ..     100     125 ..      90     131 .. 0.81
   2 ?    2.3   0.1     0.067   1.8e+02      18      47 ..     129     154 ..     125     156 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00077
                  HHHHHHHHHHHHHHHHHH...TSTTTTCC CS
    PF07554.8  18 tekknaynnAitaAkaiLnntngpnatqe 46 
                  +++k+ + +A+++A ++ + t    +t++
  MMETSP0890-20130614|35229_1 100 EDAKQKFSQAKAKAAQVVESTK---TTVQ 125
                  789***************7665...4443 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.067
                  HHHHHHHHHHHHHHHHHH...TSTTTTCCC CS
    PF07554.8  18 tekknaynnAitaAkaiLnntngpnatqee 47 
                  +e+k+   +A++++  i +      at ++
  MMETSP0890-20130614|35229_1 129 DEAKDVALSAKAKVSSIFDTG----ATTAD 154
                  688999999*******99765....44444 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.2    0.0039        11      29      59 ..     100     130 ..      63     154 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0039
    PF12732.2  29 eelkkkaddlkekaqelltearekvkekaes 59 
                  e++k+k++++k ka ++ ++++ +v++ +++
  MMETSP0890-20130614|35229_1 100 EDAKQKFSQAKAKAAQVVESTKTTVQSYVDE 130
                  3445555555555555555544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1000  (0.0731422); expected 273.4 (0.02)
Passed bias filter:                      642  (0.0469573); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|35230_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-21   75.1   0.4    4.1e-20   72.3   0.0    2.5  3  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0     3e-24   4.1e-20      20     157 ..       2     201 ..       1     202 [. 0.90
   2 ?   -0.5   0.0     0.077   1.1e+03      57      71 ..     320     334 ..     313     367 .. 0.77
   3 ?   -3.3   0.0      0.53   7.3e+03      17      41 ..     423     447 ..     410     462 .. 0.74

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 3e-24
                  GTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHHHCCCCE...EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT............................SS.CHHHHHHHHHHHHHHHHH...............................HCTTTSEEEEEE-TTHHHH CS
   PF00300.17  20 gwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaeilleeld...ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp............................egesladvyeRvapfleelie...............................akdkgenvlivsHggvlra 157
                  gw+dv Lt++G+++a ++g+  ++ ++++ ++ytS+l+Ra  T+e++le+++   +pi+ +++L+er++g++ gl+k+e+ e+ ++e  +  r+ k+  pp                             +esl  ++eRv +f+ e i                                ++++++  livsH +++r 
  MMETSP0890-20130614|35230_1   2 GWTDVSLTPQGEWEAIAAGRMAADTKIRWVKAYTSELSRAKRTTELMLESMSrhqVPIESTWKLNERHYGALTGLHKSETMEKWGAERVMAMRRGKDSPPPmtpehpmwkhivggnplreaqmlagdlpVAESLPMCRERVWKFWVECIVpdliqaldddfedeenrrifgkslgilhlhhHHRRKRGALIVSHLHTIRL 201
                  9***99*************99999**********************999555555******************************77777777666666667888*******************99999888*****************99***************************98666666666********996 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.077
                  HHHHHHHHHHCCCCE CS
   PF00300.17  57 kRaiqTaeilleeld 71 
                  +Rai Tae ++++ +
  MMETSP0890-20130614|35230_1 320 RRAIATAEEVAAQCQ 334
                  7********998665 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.53
                  BGGGTCC--B-----HHHHHHHTHH CS
   PF00300.17  17 rlqgwsdvpLtekGreqarelgkkL 41 
                   + gws +pL+e+  + a ++ + L
  MMETSP0890-20130614|35230_1 423 LIVGWSATPLSEQPPRAAAAALEGL 447
                  4678888899988877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.37s 00:00:01.25 Elapsed: 00:00:00.83
# Mc/sec: 1691.89
//
Query:       MMETSP0890-20130614|35231_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-85  284.5   0.0      9e-85  284.0   0.0    1.1  1  PF03133.10 Tubulin-tyrosine ligase family
    6.3e-08   31.6   0.0     0.0015   17.2   0.0    2.3  2  PF14398.1  YheC/D like ATP-grasp
      0.003   17.2   0.0     0.0073   15.9   0.0    1.7  1  PF13535.1  ATP-grasp domain


Domain annotation for each model (and alignments):
>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.0   0.0     2e-88     9e-85       7     285 ..      78     373 ..      72     380 .. 0.96

  Alignments for each domain:
  == domain 1    score: 284.0 bits;  conditional E-value: 2e-88
   PF03133.10   7 kdqllnhfpesseitrkdllvknlkrtkkkeekk........lkflprtfvlpadlrefveeaekeesntwIvKpsasarGkgIrvfnklsdilki...............vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkssslneesnekkgkkwslqelekyleeirkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlksttkldaelkeeliddvlnvv 285
                  + q++nhf +  e++rkdllvknlkr k + +++        ++f+p +fvlp+++++fvee++++   +wI+Kp  sa+G+gI++f++ls+i+++               +   + e ++vq+Yie+P+Li+g+KFD+Rlyv+vts+ pL +Y+Y+ g++Rf+   Ys+   d+ +++vHLTN++iqk+     e++++ +g+k +l++l+   ++  + + ++e++ +i ++il++ + a++ ++  +k+cfelyG+Dilid++lkpwL+EvNasP+l+++t++d ++k ++++d+l++v
  MMETSP0890-20130614|35231_1  78 PQQRINHFRNGRELCRKDLLVKNLKRIKRTLQRDgqidqaraYEFMPLSFVLPREYAMFVEEFKRSGG-IWIMKPIGSAQGRGIFLFSRLSEISEWrtdprrcffsdkhenERPPEPEAYIVQRYIENPYLIGGKKFDIRLYVVVTSFSPLVAYLYRGGFARFSHTRYSSDPADIANNFVHLTNVAIQKN----AENYDARSGGKMNLKSLKFLMASRHGMQAIDELFLAIERVILRS-LLAVQNVMIADKHCFELYGYDILIDDELKPWLIEVNASPSLSANTQDDYNFKCDMLNDTLDIV 373
                  389*************************************************************9999.*************************************9887644457789***********************************************************************....9*******************************************.************************************************************953 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.4e-05     0.062      58     137 ..     147     219 ..     116     222 .. 0.79
   2 !   17.2   0.0   3.3e-07    0.0015     207     240 ..     322     356 ..     272     370 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
    PF14398.1  58 vylKPasGskGkgiirltkkegkyivrtedekkeqtkkfsslaklaselkkklskkkylvQqgidl.ieiegrpvDfRvlv 137
                   ++KP+ +++G+gi+  ++     i +++++          + + ++e+++  + + y+vQ++i+    i g+ +D+R+ v
  MMETSP0890-20130614|35231_1 147 WIMKPIGSAQGRGIFLFSRLS--EISEWRTDPR------RCFFSDKHENERPPEPEAYIVQRYIENpYLIGGKKFDIRLYV 219
                  589***************999..3444444444......235667899999999**********85256899******976 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 3.3e-07
    PF14398.1 207 arlgEL.GlDlglDkegriWllEvNskPgkksfke 240
                  ++ +EL G D+ +D+e ++Wl+EvN+ P+ + +++
  MMETSP0890-20130614|35231_1 322 KHCFELyGYDILIDDELKPWLIEVNASPSLSANTQ 356
                  44566669*********************998887 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-06    0.0073      19     100 ..     124     220 ..     102     269 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.6e-06
    PF13535.1  19 vprfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeve............ldegeflvEeyie......Gdeysvdglvl 100
                     f+l+++++ + +  ++ g+ +++KP  +a  +g+++++  +e+ ++ ++ +   +             ++++++v+ yie      G  + +  +v+
  MMETSP0890-20130614|35231_1 124 PLSFVLPREYAMFVEEFKRSGGIWIMKPIGSAQGRGIFLFSRLSEISEWRTDPR---RcffsdkhenerpPEPEAYIVQRYIEnpyligGKKFDIRLYVV 220
                  344889999999999999999*******************99999999944432...1345777788889*************88888777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:01.19
# Mc/sec: 938.41
//
Query:       MMETSP0890-20130614|35242_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-12   45.4   0.0    1.1e-10   41.3   0.0    2.2  2  PF08212.7 Lipocalin-like domain


Domain annotation for each model (and alignments):
>> PF08212.7  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   8.1e-15   1.1e-10      19     119 ..       3     111 ..       2     130 .. 0.84
   2 ?    1.7   0.0     0.013   1.7e+02      54      93 ..     194     219 ..     152     233 .. 0.62

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 8.1e-15
    PF08212.7  19 rfergcvdvtaeYtlrddgt....iaVenrcrkvdgklkeiegkAkvedpaseaklkVsFlkeflvvkgdYwvlelddd....yslalvgspdrkylwilsRtpqlsee 119
                   fer++v v a+Y+l++d+t    ++  n+  +++g+ ++++g A ++d ++ ++l V+F++++ ++ g Yw+++l +     y +a+v+  + + l++l+R p   +e
  MMETSP0890-20130614|35242_1   3 TFERNSVCVLADYALDQDDTygeiVRLVNSASTSQGEGTNVTGFAFIADATNPGELSVKFDPPVPQFLGSYWIIKLGPIyngiYDYAIVSDDKSQTLFVLARCPMRYSE 111
                  699*************99863444688899999*****************************777**********98852235789****************9974444 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.013
    PF08212.7  54 eiegkAkvedpaseaklkVsFlkeflvvkgdYwvlelddd 93 
                  +i           +++  V++++     +g Y +l  d+d
  MMETSP0890-20130614|35242_1 194 RI-----------KGQYNVWYDP---HNNGTYTILSDDSD 219
                  22...........3455566666...67777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.98
# Mc/sec: 765.37
//
Query:       MMETSP0890-20130614|35246_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       172  (0.0125805); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.42s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 202.77
//
Query:       MMETSP0890-20130614|35247_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:01.11
# Mc/sec: 1554.39
//
Query:       MMETSP0890-20130614|35274_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 616.71
//
Query:       MMETSP0890-20130614|35283_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 232.98
//
Query:       MMETSP0890-20130614|35281_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 694.94
//
Query:       MMETSP0890-20130614|35282_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-18   66.6   0.9    6.8e-18   65.2   0.6    1.7  1  PF12697.2  Alpha/beta hydrolase family
      3e-17   62.6   0.0    5.8e-17   61.6   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
      1e-09   38.0   2.2    5.7e-09   35.6   1.5    2.2  1  PF06127.6  Protein of unknown function (DUF962)
      2e-08   33.9   0.1    1.4e-07   31.2   0.0    2.0  1  PF00561.15 alpha/beta hydrolase fold
    1.7e-07   30.8   0.0    2.7e-07   30.2   0.0    1.3  1  PF07859.8  alpha/beta hydrolase fold
     0.0023   17.3   0.0        2.9    7.1   0.0    2.8  3  PF02230.11 Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.018   13.6   0.0      0.031   12.9   0.0    1.3  1  PF05677.7  Chlamydia CHLPS protein (DUF818)
      0.072   12.7   0.0       0.11   12.0   0.0    1.2  1  PF01083.17 Cutinase


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.6     4e-21   6.8e-18       1     201 [.     221     405 ..     221     419 .. 0.72

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 4e-21
                  EEE--------...----H........HHHHHT.T.TSEEEEE-----------S...S--HHHHHHHHHHHHHH--..--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG------HHHHTT--S-EEEEE-----HHHHHHHHHHHHH CS
    PF12697.2   1 vvllHGlggsa...eswrp........laeaLa.a.gyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl.rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraalldadlrealarldvPvlviageaDrvvppeearrlaea 201
                  ++++HG+ g+    +  +         l +aLa +   +v+++D++G+ +Sd + + + + l+ +a+++++++++  + +++vl G SlG+ava+++aa     v gl+l +p+++  +        + +           +++     ++l++  ++ ++++     ++e+l     +++ ++ l++ +vP lv++ ++D+vvp+   r++ + 
  MMETSP0890-20130614|35282_1 221 ILFFHGNCGTRlgvF--KMrrpsgrveLCRALAsHwKAHVICFDYRGFADSDNLTP-SETGLALDAQAALRWVRTNAPhARIVLYGQSLGTAVATELAANARPCVNGLILDGPFPSVLE-------AAET-----------YPFV---GYYLIPTLRYFNYLEK----TIEMLPD-CRHESQAHKLPS-SVPLLVVHKKQDEVVPAILGRKVFDL 405
                  79*******998443..4455899999*****8346779**************996.77899999**9999998877668********************888************3222.......1111...........1121...2223344444444443....3444433.222333466665.6***************5555554443 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   3.4e-20   5.8e-17       2     128 ..     221     407 ..     220     426 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 3.4e-20
    PF12695.2   2 vvlvhGaggdssay.........eplaealakr.gfavvavdlpghgas...........egaaaakrvlaadlldleriilvGhSlGGgvalelagrd.drvkglvllapfpd.gedlakltl......................................pvllihGtrDgvvppeeaeklakalp 128
                  ++++hG+ g++ +            l +ala++ + +v+ +d++g  +s            +a+aa r++ + ++ + ri+l+G+SlG++va+ela++  + v gl+l +pfp+  e+  +  +                                      p+l++h+++D+vvp+   +k+++ ++
  MMETSP0890-20130614|35282_1 221 ILFFHGNCGTRLGVfkmrrpsgrVELCRALASHwKAHVICFDYRGFADSdnltpsetglaLDAQAALRWV-RTNAPHARIVLYGQSLGTAVATELAANArPCVNGLILDGPFPSvLEAAETYPFvgyyliptlryfnylektiemlpdcrhesqahklpssvPLLVVHKKQDEVVPAILGRKVFDLAH 407
                  89*****887666545555555479999********************9655554444444444777777.7778999*******************999***********98743433333338888888888888899999999999999999999******************999999887766 PP

>> PF06127.6  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.5   3.3e-12   5.7e-09       3      81 ..       8     129 ..       6     141 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 3.3e-12
    PF06127.6   3 sleefyafYlaeHsnptnrllHfigvplilllvvllllrak......................................lklllalfvvgyifaf.....vGHfvfEkrkPAlfkdplqsll 81 
                   +e+ +++Y   Hs   n llHf+ vpl  ++++++++  +                                       ++ + + v+ + +a      +GH+++Ek+kP+++++p  s +
  MMETSP0890-20130614|35282_1   8 RYERDLETYRLAHSSIFNYLLHFVLVPLETVSALVAIAQVSkiaaisiqvtasifvllaarpklafvqlswtalsiflmDRMTVIAAVLLWLGALifqvtIGHGLLEKKKPSFVNNPTISSV 129
                  5788999*******************************9999**********************************9984666666666666554223347***************965533 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     8e-11   1.4e-07       2      91 ..     257     341 ..     256     418 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 8e-11
                  EEEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--HHSHCSHSTTCH CS
   PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtvavlsdglssdvln 91 
                  +vi++D rG++ S+     + +     d+ ++l++v+   +  +++l G S+G++ a+++aa +   v +++l+g++   + +l ++++ 
  MMETSP0890-20130614|35282_1 257 HVICFDYRGFADSDNL--TPSETGLALDAQAALRWVRTNAPHARIVLYGQSLGTAVATELAANARPCVNGLILDGPF---PSVLEAAETY 341
                  79************73..66666667899999********************************************7...5555555444 PP

>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.6e-10   2.7e-07       1     108 [.     221     330 ..     221     372 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.6e-10
                  EEEE------.SS-TGGG.....HHHHHHHHHHHTSEEEEEE--.-T.TTS-TTHH...HHHHHHHHHHHHHTTTTHTCCCCEEEEE-------HHHHHHHHHHH-----EEEEEEES- CS
    PF07859.8   1 llyfHGGGfv.lgsadth.....dalcrrlakelgavvvsvdYr.lA.PehrfPaa...vedalaalrwlaeqawelgadpsrivvaGdSaGGnLaaavalrardegepeiaaqvliyP 108
                  +l+fHG + + lg +++       +lcr la++ +a v+  dYr  A  ++  P       da aalrw++++     a  +riv+ G+S G   a+ +a+ ar      +++++l  P
  MMETSP0890-20130614|35282_1 221 ILFFHGNCGTrLGVFKMRrpsgrVELCRALASHWKAHVICFDYRgFAdSDNLTPSEtglALDAQAALRWVRTN-----APHARIVLYGQSLGTAVATELAANARPC----VNGLILDGP 330
                  6889996544333333334444499*******************73334455554411145899999999999.....7999******************999874....667666666 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.75   1.3e+03      11      29 ..     215     233 ..     202     241 .. 0.73
   2 !    7.0   0.0    0.0019       3.2      97     132 ..     289     324 ..     259     365 .. 0.81
   3 !    7.1   0.0    0.0017       2.9     147     180 ..     371     405 ..     363     420 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.75
   PF02230.11  11 kpaqavvIflHGlGdsghl 29 
                  ++a+ +++f+HG   ++ +
  MMETSP0890-20130614|35282_1 215 QEARLCILFFHGNCGTRLG 233
                  5677789999996555555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0019
   PF02230.11  97 elkkgipssriiigGFSqGaalalylaltspkplgg 132
                  ++++  p  ri++ G S G+a+a++la   +  + g
  MMETSP0890-20130614|35282_1 289 WVRTNAPHARIVLYGQSLGTAVATELAANARPCVNG 324
                  667778999****************99877655555 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0017
   PF02230.11 147 eqsatkva.kipilqlHgeeDevvplalgkaakel 180
                  e++a k++  +p l +H ++Devvp  lg+++ +l
  MMETSP0890-20130614|35282_1 371 ESQAHKLPsSVPLLVVHKKQDEVVPAILGRKVFDL 405
                  5566777779*******************987665 PP

>> PF05677.7  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05     0.031     163     231 ..     247     313 ..     233     323 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.8e-05
    PF05677.7 163 lkrlakllganilvfnYPGvmsskGei.trenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtlvqae 231
                   + la + +a ++ f+Y G  +s   + +   la   qa  r++r   + P+a+ i+ yG sLGt v +e
  MMETSP0890-20130614|35282_1 247 CRALASHWKAHVICFDYRGFADSDNLTpSETGLALDAQAALRWVRT--NAPHAR-IVLYGQSLGTAVATE 313
                  567999****************987651455799999999999985..679997.99********99765 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.5e-05      0.11      43      99 ..     262     315 ..     241     336 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.5e-05
                  E...S------TSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE---B---HHHHHHH CS
   PF01083.17  43 qgVnYpAdleqslyegsaaaGiadaarlvnsaaskCPntkivlgGYSqGaavmdnai 99 
                  +   Y+   ++ +++ s+   + da++++  + ++ P ++ivl G S G+av++  +
  MMETSP0890-20130614|35282_1 262 D---YRGFADSDNLTPSETGLALDAQAALRWVRTNAPHARIVLYGQSLGTAVATELA 315
                  4...665555555667777777899**************************987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.84u 0.36s 00:00:01.20 Elapsed: 00:00:01.10
# Mc/sec: 1056.58
//
Query:       MMETSP0890-20130614|35290_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       146  (0.0106788); expected 273.4 (0.02)
Passed bias filter:                      146  (0.0106788); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 193.68
//
Query:       MMETSP0890-20130614|35291_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-06   25.2   0.2    2.1e-05   24.0   0.1    1.6  1  PF10309.4 Protein of unknown function (DUF2414)


Domain annotation for each model (and alignments):
>> PF10309.4  Protein of unknown function (DUF2414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   1.5e-09   2.1e-05      31      60 ..     109     138 ..      92     139 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.5e-09
    PF10309.4  31 eqstfrieWIdDtsvNivfkseedaakALs 60 
                   q+ + ieW+ D+s+N+ f++ ++a++AL 
  MMETSP0890-20130614|35291_1 109 FQRASYIEWLGDESCNVWFSEIAEAERALL 138
                  477899**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       692  (0.0506144); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 922.74
//
Query:       MMETSP0890-20130614|35302_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 261.03
//
Query:       MMETSP0890-20130614|35303_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   33.6   0.0    2.5e-08   33.6   0.0    1.0  1  PF01412.13 Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.8e-12   2.5e-08      42      85 ..       2      44 ..       1      52 [] 0.89

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.8e-12
                 HHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCCT CS
   PF01412.13 42 vhrslgvhiskvkSltldkwteeqlellkelgNkkaneileaks 85
                 vhr+l    sk+kS+ +  +t++++++++++gN++a++i+ a+ 
  MMETSP0890-20130614|35303_1  2 VHRDLF-GPSKIKSVAMAVFTTDEVKAMRAGGNEHARKIWMARW 44
                 899986.79*******************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       158  (0.0115565); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.37s 00:00:00.65 Elapsed: 00:00:00.75
# Mc/sec: 166.15
//
Query:       MMETSP0890-20130614|35304_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-06   25.4   1.1    3.6e-06   25.4   0.7    1.0  1  PF02010.10 REJ domain
  ------ inclusion threshold ------
        1.5    8.7   4.0          3    7.7   2.8    1.8  1  PF13861.1  FlgD Tudor-like domain


Domain annotation for each model (and alignments):
>> PF02010.10  REJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.7   5.3e-10   3.6e-06      56     110 ..       2      57 ..       1      60 [] 0.92

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 5.3e-10
   PF02010.10  56 ltvti.lseevleatdikkvrvepspLvavIkGGtsrvigyrsnitLDGseSyDPD 110
                  +tvt+  + +++++++++ + +++ ++vavI+GG+  v  ++++i +++s SyD +
  MMETSP0890-20130614|35304_1   2 ITVTVfDQVTGVSNSASTRLIMSSGSVVAVITGGDRAVSTASNEIEVSASASYDEN 57 
                  6777779999********************************************76 PP

>> PF13861.1  FlgD Tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.8   0.00044         3      23      51 ..       2      28 ..       1      52 [. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00044
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF13861.1 23 atvlvsgrVdsVtigggspvLnlgggggt 51
                 +tv+v+++V++V+++  s+ L +  +g+ 
  MMETSP0890-20130614|35304_1  2 ITVTVFDQVTGVSNSA-STRLIM-SSGSV 28
                 6899********8884.788999.66664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.85
# Mc/sec: 169.15
//
Query:       MMETSP0890-20130614|35299_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-20   71.1   0.0    1.5e-19   69.8   0.0    1.7  1  PF00784.12 MyTH4 domain


Domain annotation for each model (and alignments):
>> PF00784.12  MyTH4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   1.1e-23   1.5e-19      18     114 ..     248     345 ..     241     346 .. 0.91

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 1.1e-23
   PF00784.12  18 eeLRDEiycQiikQltknpskesaekgWeLltlltstfpPSeellkylseflkkraheqssepeleglaakclerLkktk.kegkRklpPsaeeieal 114
                  ++LRDEiy Q++kQlt+nps +s  + W+Ll+l++ tf+PS+ l++ l+ f ++ ++ + ++ + e+ a +    L+    +++   +pP+a+ei al
  MMETSP0890-20130614|35299_1 248 HCLRDEIYLQLCKQLTDNPSGTSRYRCWRLLRLVSLTFAPSNMLKPLLESFAEDVIAVAAKGATNEVHALTAKSFLEILRsCKILYSTPPQADEIHAL 345
                  89*******************************************************9999999999888888888876515568999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:01.10
# Mc/sec: 1222.14
//
Query:       MMETSP0890-20130614|35313_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   34.1   0.0    6.5e-08   33.2   0.0    1.5  1  PF13578.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.7e-12   6.5e-08       2     106 .]     179     284 ..     178     284 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 4.7e-12
    PF13578.1   2 EiGvysGvstlvllqalkrngagrlysvdpdpgaeeaaalaee....agladrvrllkgdseealasla...dgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                  E G  +G+s+++ l++  r    +++s+d  +   +aa  +++    + + +r +l+ g+s  +l+        ++Dl+f+Dggh+ +++ ad++++l + +p + +++dD+
  MMETSP0890-20130614|35313_1 179 ETGLNAGYSAVAALSVDIRV---QVTSFDIAE---NAAVTVAKswidQRFPNRHSLIYGTSTITLPLAIetgIPPCDLVFVDGGHEEDTAEADMRNFLILSRPQAPLIVDDI 284
                  89********9988765444...599999999...33333333355589************99999544444569************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:01.04
# Mc/sec: 721.21
//
Query:       MMETSP0890-20130614|35309_1  [L=1174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-14   50.5  23.0       0.84    9.7   0.5   11.5 10  PF02985.17 HEAT repeat
    2.9e-11   43.4  35.1     0.0017   18.7   0.3   12.1 11  PF13513.1  HEAT-like repeat
    6.7e-11   42.2  42.3      0.012   15.7   3.2   10.1 10  PF13646.1  HEAT repeats
    8.3e-08   31.7   5.6       0.88    8.7   0.1    6.9  8  PF12348.3  CLASP N terminal
    1.3e-07   31.2   2.4    2.9e-07   30.1   0.9    2.3  2  PF03810.14 Importin-beta N-terminal domain
  ------ inclusion threshold ------
       0.88    9.3  19.9        1.2    8.9   0.1    6.5  7  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.51   1.2e+03      10      21 ..      51      62 ..      43      66 .. 0.86
   2 !    9.7   0.5   0.00037      0.84       4      29 ..     165     190 ..     162     192 .. 0.90
   3 ?    4.3   0.0      0.02        45       4      29 ..     252     281 ..     249     282 .. 0.82
   4 !    8.5   0.0   0.00089         2       2      30 ..     380     408 ..     380     409 .. 0.92
   5 ?    4.6   0.1     0.016        36       2      31 .]     422     451 ..     421     451 .. 0.89
   6 ?    3.3   0.0     0.044     1e+02       1      30 [.     462     491 ..     462     492 .. 0.95
   7 ?    4.5   0.1     0.017        39       1      26 [.     504     529 ..     504     531 .. 0.93
   8 ?    2.1   0.0       0.1   2.4e+02       9      28 ..     555     575 ..     548     578 .. 0.88
   9 !    9.0   0.1   0.00063       1.4       7      28 ..     830     851 ..     824     853 .. 0.83
  10 !    8.2   0.0    0.0011       2.6       1      28 [.    1000    1027 ..    1000    1029 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.51
                 TSSSHHHHHHHH CS
   PF02985.17 10 nDpspeVReaAa 21
                 n+p++ VR+ Aa
  MMETSP0890-20130614|35309_1 51 NSPNAAVRQIAA 62
                 699******998 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00037
                  HHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   4 lllkllnDpspeVReaAaeaLgalae 29 
                  l+ ++lnDp+  V +aA++a +a++ 
  MMETSP0890-20130614|35309_1 165 LFANALNDPDRTVCAAALRACCAFIA 190
                  7889******************9975 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.02
                  HHHHHHT..SS..SHHHHHHHHHHHHHHHH CS
   PF02985.17   4 lllklln..Dp..speVReaAaeaLgalae 29 
                  lll +++  D+  + ++R++Aa+ +g+lae
  MMETSP0890-20130614|35309_1 252 LLLDMMRapDEalDSSIRDSAAQVVGTLAE 281
                  5667777777778999************98 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00089
                  HHHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalaev 30 
                  l l+ ++l+D+++  R++ a a+g +ae+
  MMETSP0890-20130614|35309_1 380 LSLIARCLQDDDEATRRSGAAAMGVVAEG 408
                  57899********************9997 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.016
                  HHHHHHHHTSSSHHHHHHHHHHHHHHHHCS CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgalaevl 31 
                  l+ll+++   ++   Re  ++a g+lae++
  MMETSP0890-20130614|35309_1 422 LNLLERAAVNSDTATRECLCFAYGQLAEHC 451
                  7778888889999****************8 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.044
                  HHHHHHHHHTSSSHHHHHHHHHHHHHHHHC CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLgalaev 30 
                  +lP++ + ++D+ + V  ++++ L +++e 
  MMETSP0890-20130614|35309_1 462 ILPVVFEFIQDKRAAVVGTSCYVLETFCES 491
                  89*************************986 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.017
                  HHHHHHHHHTSSSHHHHHHHHHHHHH CS
   PF02985.17   1 llPlllkllnDpspeVReaAaeaLga 26 
                  l+  ll lln++   +Re+Aa a+ga
  MMETSP0890-20130614|35309_1 504 LMERLLVLLNHQLLGIREMAAAAIGA 529
                  78999*******************97 PP

  == domain 8    score: 2.1 bits;  conditional E-value: 0.1
                  HTSS.SHHHHHHHHHHHHHHH CS
   PF02985.17   9 lnDp.speVReaAaeaLgala 28 
                  l+D+ ++e R  ++e+Lg +a
  MMETSP0890-20130614|35309_1 555 LTDEiAWELRGRSLETLGHIA 575
                  569999*************98 PP

  == domain 9    score: 9.0 bits;  conditional E-value: 0.00063
                  HHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   7 kllnDpspeVReaAaeaLgala 28 
                   l++D+s +V + A+eaLg+++
  MMETSP0890-20130614|35309_1 830 LLIEDTSKSVVAHACEALGDIL 851
                  4666***************995 PP

  == domain 10    score: 8.2 bits;  conditional E-value: 0.0011
                   HHHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17    1 llPlllkllnDpspeVReaAaeaLgala 28  
                   llPl+ +++ D++p+++++ a+ Lg l+
  MMETSP0890-20130614|35309_1 1000 LLPLFSQACADSHPNIKRNGAFGLGSLF 1027
                   89***********************986 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.092   2.1e+02      14      52 ..      17      65 ..      10      67 .. 0.63
   2 ?    3.1   0.3     0.061   1.4e+02      22      51 ..     155     184 ..     136     185 .. 0.75
   3 ?    1.5   0.0       0.2   4.5e+02      10      51 ..     230     275 ..     223     282 .. 0.73
   4 !   13.3   0.4   3.8e-05     0.087       2      55 .]     393     447 ..     392     447 .. 0.94
   5 !    7.4   0.0    0.0026       5.9      10      53 ..     443     486 ..     441     488 .. 0.92
   6 ?    5.1   0.5     0.014        32       3      55 .]     519     574 ..     492     574 .. 0.77
   7 ?    1.4   0.0       0.2   4.6e+02      19      34 ..     621     636 ..     610     655 .. 0.82
   8 ?   -3.0   0.0       5.1   1.2e+04       5      14 ..     712     721 ..     709     737 .. 0.62
   9 !   18.7   0.3   7.7e-07    0.0017      18      55 .]     812     850 ..     787     850 .. 0.89
  10 ?    3.7   0.0      0.04        91       8      54 ..     974    1025 ..     974    1026 .. 0.76
  11 !    7.2   0.0    0.0031         7       2      42 ..    1014    1054 ..    1013    1066 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.092
    PF13513.1 14 laggeprllepavpellpaLl.........elLedddd.eVReaAawAL 52
                 l++++ +++++a ++l p+Ll           ++++++  VR++Aa  L
  MMETSP0890-20130614|35309_1 17 LLQPNSDTIRQAEQALKPLLLkasvvsslmTIIQNSPNaAVRQIAAVVL 65
                 4566666666666666666665555544447776677779999998666 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.061
    PF13513.1  22 lepavpellpaLlelLeddddeVReaAawA 51 
                  l+  + e+  ++ ++L+d+d  V +aA++A
  MMETSP0890-20130614|35309_1 155 LSGRLGEVASLFANALNDPDRTVCAAALRA 184
                  5556678999999***99999999999998 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.2
    PF13513.1  10 aLGrlaggeprllepavpellpaLlelLedddd....eVReaAawA 51 
                  +L++la+     ++p++ e+ ++Ll++++ +d+    ++R++Aa  
  MMETSP0890-20130614|35309_1 230 CLSELAQTPVPVINPYIVEVTQLLLDMMRAPDEaldsSIRDSAAQV 275
                  5655777777888899999999999888886666776778888654 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 3.8e-05
    PF13513.1   2 rvRraAawaLGrlaggeprllep.avpellpaLlelLeddddeVReaAawALgrl 55 
                  + Rr+ a+a G +a+g ++ l++ ++ ++l +L  +  ++d  +Re+ + A g+l
  MMETSP0890-20130614|35309_1 393 ATRRSGAAAMGVVAEGFQDALRErHLGQVLNLLERAAVNSDTATRECLCFAYGQL 447
                  68************9*****9999*************99999*********9986 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.0026
    PF13513.1  10 aLGrlaggeprllepavpellpaLlelLeddddeVReaAawALg 53 
                  a G+la+ ++  +  + p +lp   e ++d+++ V +++++ L+
  MMETSP0890-20130614|35309_1 443 AYGQLAEHCQPEIVGFAPRILPVVFEFIQDKRAAVVGTSCYVLE 486
                  66889***********************************9987 PP

  == domain 6    score: 5.1 bits;  conditional E-value: 0.014
    PF13513.1   3 vRraAawaLGrlaggeprllepavpellpaLlelL.edddd..eVReaAawALgrl 55 
                  +R+ Aa+a+G++a+ + +   p+++ + + L  +   +d+   e R+ ++ +Lg++
  MMETSP0890-20130614|35309_1 519 IREMAAAAIGAAAVAASENFLPYLDRAGDTLATMCdLTDEIawELRGRSLETLGHI 574
                  68899999999888888888888887777777555444777755577777777765 PP

  == domain 7    score: 1.4 bits;  conditional E-value: 0.2
    PF13513.1  19 prllepavpellpaLl 34 
                  +   +p++p+l+p Ll
  MMETSP0890-20130614|35309_1 621 RHEFAPLIPQLVPHLL 636
                  5567899********9 PP

  == domain 8    score: -3.0 bits;  conditional E-value: 5.1
    PF13513.1   5 raAawaLGrl 14 
                   aA+ aLG++
  MMETSP0890-20130614|35309_1 712 KAAIVALGNA 721
                  4555566554 PP

  == domain 9    score: 18.7 bits;  conditional E-value: 7.7e-07
    PF13513.1  18 eprllepavpellpaLlelL.eddddeVReaAawALgrl 55 
                  +  +l+ +v+e++++L+ lL ed +++V + A+ ALg +
  MMETSP0890-20130614|35309_1 812 ANPQLQAYVDECVALLIRLLiEDTSKSVVAHACEALGDI 850
                  4778999*************777777***********87 PP

  == domain 10    score: 3.7 bits;  conditional E-value: 0.04
    PF13513.1    8 awaLGrlaggeprl.....lepavpellpaLlelLeddddeVReaAawALgr 54  
                   a+a+G+ a+ + +l     ++ +   llp+++++ +d+++ ++++ a  Lg 
  MMETSP0890-20130614|35309_1  974 AMAIGCYAELCYELppelaAARHFATLLPLFSQACADSHPNIKRNGAFGLGS 1025
                   6789995555555544445666999*****************8888887776 PP

  == domain 11    score: 7.2 bits;  conditional E-value: 0.0031
    PF13513.1    2 rvRraAawaLGr...laggeprllepavpellpaLlelLedddd 42  
                    ++r+ a +LG+   +   +p +++p++ ++l  L +lLe  d+
  MMETSP0890-20130614|35309_1 1014 NIKRNGAFGLGSlfvV---APTQASPHLNDALTTLYPLLEKADN 1054
                   6899999*****6654...5999999999999999999966443 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.2   5.1e-06     0.012       1      87 [.      10     107 ..       9     109 .. 0.81
   2 ?    3.6   0.5     0.031        72      33      55 ..     163     185 ..     126     225 .. 0.69
   3 ?    3.7   1.1     0.028        65       5      44 ..     166     261 ..     162     311 .. 0.49
   4 !    9.6   0.2   0.00043      0.98      31      81 ..     378     438 ..     351     445 .. 0.67
   5 !   12.8   0.1   4.2e-05     0.097       4      79 ..     382     478 ..     379     486 .. 0.79
   6 !    7.7   0.2    0.0017       3.9       4      86 ..     424     526 ..     420     572 .. 0.75
   7 ?    1.6   0.0      0.14   3.1e+02      46      73 ..     709     739 ..     703     771 .. 0.71
   8 !   13.5   0.5   2.5e-05     0.057      26      58 ..     810     850 ..     784     921 .. 0.78
   9 !   10.1   0.0   0.00029      0.65      30      77 ..     998    1055 ..     968    1067 .. 0.72
  10 ?   -1.9   0.0       1.6   3.7e+03      33      58 ..    1136    1161 ..    1112    1173 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.1e-06
    PF13646.1   1 leaLlaaLekdpdpevraaaieaLg.qlgseealpaLlelL.kdsdpevRraAaeaLgk.l........gdpe..alpaLlklldddedavvreaaaeaL 87 
                  le++laaL   p++++ ++a +aL   l  ++++  L   + ++++++vR+ Aa +L k +        ++ +  + +aLl +l ++++++vr + ++aL
  MMETSP0890-20130614|35309_1  10 LEQILAAL-LQPNSDTIRQAEQALKpLLLKASVVSSLMTIIqNSPNAAVRQIAAVVLRKkIaklwkkvkKSTQvlVKDALLARLHTEPERIVRKS-LAAL 107
                  57788888.68999***********8778899*********779*************9646655665543555224699999***********98.6665 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.031
    PF13646.1  33 lpaLlelLkdsdpevRraAaeaL 55 
                    +   +L+d+d  v +aA++a 
  MMETSP0890-20130614|35309_1 163 ASLFANALNDPDRTVCAAALRAC 185
                  33334578888888888888876 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.028
    PF13646.1   5 laaLekdpdpevraaaieaLg..........qlgseea...................................................lpaLlelLkdsd 44 
                   a++++dpd  v aaa++a +          +     a                                                    ++Ll++++ +d
  MMETSP0890-20130614|35309_1 166 FANALNDPDRTVCAAALRACCafiatlsvddD-----AllfrdlvpqmvqvarvaavnredtvlssfldclselaqtpvpvinpyivevTQLLLDMMRAPD 261
                  44444888888888888887755554322220.....1344444333333333333333333444443333333333333333333333444444443333 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00043
    PF13646.1  31 ealpaLlelLkdsdpevRraAaeaLgklg...........dpealpaLlklldddedavvre 81 
                   +l ++ ++L+d+d+++Rr+ a a+g ++             ++l+ L++++ +++ a+ re
  MMETSP0890-20130614|35309_1 378 PTLSLIARCLQDDDEATRRSGAAAMGVVAegfqdalrerhLGQVLNLLERAAVNSDTAT-RE 438
                  45788899999999999999999999774333333322223567777777776655444.54 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 4.2e-05
    PF13646.1   4 LlaaLekdpdpevraaaieaLg...........qlgseealpaLlelLkdsdpevRraAaeaLgklg..........dpealpaLlklldddedavv 79 
                  L+a+ ++d d+ +r++ + a+g           +++  ++l++L +++ +sd ++R+  + a g+l+           p+ lp+  + ++d   avv
  MMETSP0890-20130614|35309_1 382 LIARCLQDDDEATRRSGAAAMGvvaegfqdalrERHLGQVLNLLERAAVNSDTATRECLCFAYGQLAehcqpeivgfAPRILPVVFEFIQDKRAAVV 478
                  677777999999***9999999999988886655555599************************996555444544568888888888887777666 PP

  == domain 6    score: 7.7 bits;  conditional E-value: 0.0017
    PF13646.1   4 LlaaLekdpdpevraaaieaLgqlgse..........ealpaLlelLkdsdpevRraAaeaLgkl.......gdpealpaLlk...lldddedavvreaaaea 86 
                  Ll++++ ++d  +r+  + a gql++           ++lp ++e+++d+ ++v  + +++L  +         ++ l+ L++    l + +   +re aa+a
  MMETSP0890-20130614|35309_1 424 LLERAAVNSDTATRECLCFAYGQLAEHcqpeivgfapRILPVVFEFIQDKRAAVVGTSCYVLETFcesmdaeEINAHLQLLMErllVLLNHQLLGIREMAAAA 526
                  5555555899999999999999887766666777767779999999999999999999999997644332211233466666644434444555556665555 PP

  == domain 7    score: 1.6 bits;  conditional E-value: 0.14
    PF13646.1  46 evRraAaeaLgklg...dpealpaLlklldd 73 
                  ++++aA+ aLg+ +   d +  ++L+k+l++
  MMETSP0890-20130614|35309_1 709 NLKKAAIVALGNAAeftDGAIEKCLVKALET 739
                  5667777777776533133334567766654 PP

  == domain 8    score: 13.5 bits;  conditional E-value: 2.5e-05
    PF13646.1  26 qlgseea.......lpaLlelL.kdsdpevRraAaeaLgkl 58 
                  +l+++++       +++L++lL +d + +v + A+eaLg +
  MMETSP0890-20130614|35309_1 810 RLANPQLqayvdecVALLIRLLiEDTSKSVVAHACEALGDI 850
                  34444224444444******999****************98 PP

  == domain 9    score: 10.1 bits;  conditional E-value: 0.00029
    PF13646.1   30 eealpaLlelLkdsdpevRraAaeaLgkl..........gdpealpaLlklldddeda 77  
                   +++lp+  +++ ds+p+++r+ a  Lg l            ++al +L  ll+  ++a
  MMETSP0890-20130614|35309_1  998 ATLLPLFSQACADSHPNIKRNGAFGLGSLfvvaptqaspHLNDALTTLYPLLEKADNA 1055
                   467999999*******************989976654433567777777777776654 PP

  == domain 10    score: -1.9 bits;  conditional E-value: 1.6
    PF13646.1   33 lpaLlelLkdsdpevRraAaeaLgkl 58  
                      +++  k +dp+v  a+ +a ++l
  MMETSP0890-20130614|35309_1 1136 FRGVTARSKIDDPDVASAVSRAAAQL 1161
                   44555555557777777777777776 PP

>> PF12348.3  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.043        99      92     161 ..       7      71 ..       2      87 .. 0.74
   2 !    8.7   0.1   0.00039      0.88      98     206 ..      87     190 ..      75     213 .. 0.82
   3 ?   -1.5   0.0      0.49   1.1e+03      68     108 ..     222     262 ..     207     285 .. 0.75
   4 !    8.0   0.0   0.00066       1.5      39     120 ..     447     529 ..     442     542 .. 0.88
   5 !    4.7   0.0    0.0065        15      53     105 ..     589     641 ..     557     645 .. 0.83
   6 ?    0.6   0.0      0.12   2.7e+02     147     220 ..     703     763 ..     700     768 .. 0.64
   7 ?    0.7   0.0      0.11   2.5e+02      83     132 ..     811     859 ..     808     894 .. 0.82
   8 ?   -3.5   0.0         2   4.6e+03     175     211 ..     997    1033 ..     974    1047 .. 0.53

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.043
    PF12348.3  92 veillptLlkllgdtkkiisqnanqaladllenasftsrlelqvlsvalqdKNvqpReysaiwLkiller 161
                   e+l ++L  ll+ + + i+ +a+qal+ ll +as++s l +++++   +  N+  R+ +a  L+  + +
  MMETSP0890-20130614|35309_1   7 YEHLEQILAALLQPNSDTIR-QAEQALKPLLLKASVVSSL-MTIIQ---NSPNAAVRQIAAVVLRKKIAK 71 
                  57777888888888888887.59************77777.55555...567888888888777765554 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00039
    PF12348.3  98 tLlkllgdtkkiisqnanqaladllenasftsrlelqvlsvalqdKNvqpReysaiwLkillerhgsdkskleasglldliekslkkgleDanpeVReaaRatfweffk 206
                   Ll +l    ++i  ++ +ala+ l++ s  ++l+l v ++a q+ ++  Re +  +L  + e  +     ++ sg l ++  ++  +l D++ +V  aa  +   f  
  MMETSP0890-20130614|35309_1  87 ALLARLHTEPERIVRKSLAALASTLAKSSSWPELLLFVSECARQQQSAGHRELAYMLLLHMSETVA-----ASLSGRLGEVASLFANALNDPDRTVCAAALRACCAFIA 190
                  577788888889999999999999999999********************************9999.....5555556789**************98877666565555 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.49
    PF12348.3  68 tlsstachllkelaiqlkhqldpmveillptLlkllgdtkk 108
                  t+ s  +  l+ela++  + + p++  + ++Ll+++ +  +
  MMETSP0890-20130614|35309_1 222 TVLSSFLDCLSELAQTPVPVINPYIVEVTQLLLDMMRAPDE 262
                  67778888999999999999****9999*****99987654 PP

  == domain 4    score: 8.0 bits;  conditional E-value: 0.00066
    PF12348.3  39 vpekavseflellkqlleailkalssLrttlsstachllkelaiqlkhq.ldpmveillptLlkllgdtkkiisqnanqalad 120
                    e++++e++     +l  +++ + + r +++ t+c +l+ ++  +  + + + ++ l++ Ll ll  +   i++ a++a+ +
  MMETSP0890-20130614|35309_1 447 LAEHCQPEIVGFAPRILPVVFEFIQDKRAAVVGTSCYVLETFCESMDAEeINAHLQLLMERLLVLLNHQLLGIREMAAAAIGA 529
                  5677888888888889999999**********************999999*****************9999999999999876 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0065
    PF12348.3  53 qlleailkalssLrttlsstachllkelaiqlkhqldpmveillptLlkllgd 105
                  + l+a +k+l   +t l   +  ++  +a+ + h+++p++ +l+p+Ll++++ 
  MMETSP0890-20130614|35309_1 589 HALHAATKNLDFDSTELAEYSYGFFANIAKVMRHEFAPLIPQLVPHLLDVISR 641
                  55667777777778999999999*************************99875 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.12
    PF12348.3 147 pReysaiwLkillerhgsdkskleasglldliekslkkgleDanpeVReaaRatfweffkvwPsrAksllssld 220
                   R+ ++++ k ++   g   +++e + +   iek+l+k+l        e+ ++t+ +f++  ++r+  +l++l 
  MMETSP0890-20130614|35309_1 703 VRTAVMNLKKAAIVALG---NAAEFTDGA--IEKCLVKAL--------ETIKSTVNYFHHEIRERSAVVLQQLV 763
                  55555555555555555...344444433..777777776........57888888888888888888887775 PP

  == domain 7    score: 0.7 bits;  conditional E-value: 0.11
    PF12348.3  83 qlkhqldpmveillptLlkll.gdtkkiisqnanqaladllenasftsrle 132
                    ++ql+++v+  + +L++ll  dt k + + a  al d+l +++  + ++
  MMETSP0890-20130614|35309_1 811 LANPQLQAYVDECVALLIRLLiEDTSKSVVAHACEALGDILVDVG--PAIL 859
                  5688999999999999999753799999999*********99998..7774 PP

  == domain 8    score: -3.5 bits;  conditional E-value: 2
    PF12348.3  175 ldliekslkkgleDanpeVReaaRatfweffkvwPsr 211 
                   + ++ +++ ++++D+ p+++++    + ++f v+P++
  MMETSP0890-20130614|35309_1  997 FATLLPLFSQACADSHPNIKRNGAFGLGSLFVVAPTQ 1033
                   3444445555555555555444433344444444444 PP

>> PF03810.14  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.9   1.3e-10   2.9e-07       1      73 [.      28      90 ..      28      94 .. 0.92
   2 ?   -3.6   0.0       4.4     1e+04      13      30 ..     294     311 ..     291     324 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHHHSCTHHHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHSCCHHHHHHHHCS-HHHHHHHHHHHHH CS
   PF03810.14  1 AekqLnqlekqkPgflsallqilanksldlevRqlAalyLknlItkhWkseeaqrqqqlpeeekelIrnnlln 73
                 Ae++L+ l       +s+l+ i+ ++s + +vRq+Aa++L+++I+k Wk        ++ ++++ l+++ ll 
  MMETSP0890-20130614|35309_1 28 AEQALKPLLLK-ASVVSSLMTII-QNSPNAAVRQIAAVVLRKKIAKLWK--------KVKKSTQVLVKDALLA 90
                 89********9.6**********.55669********************........************9986 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.4
                  THHHHHHHHHHHTTTSTH CS
   PF03810.14  13 Pgflsallqilanksldl 30 
                  P+ + ++++ila+++++ 
  MMETSP0890-20130614|35309_1 294 PTIVETCISILARTDTSK 311
                  677889999999954443 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.6     1e+04      16      29 ..      13      26 ..      12      28 .. 0.61
   2 ?    4.7   0.2     0.011        25       4      37 ..      32      66 ..      29      67 .. 0.92
   3 ?   -1.9   0.1       1.3     3e+03      16      37 ..      87     108 ..      86     109 .. 0.87
   4 ?   -1.7   0.0       1.1   2.6e+03      16      36 ..     382     402 ..     379     405 .. 0.80
   5 ?    5.0   0.1     0.009        21      14      37 ..     505     528 ..     504     528 .. 0.92
   6 ?   -0.8   0.1      0.59   1.3e+03      27      40 ..     709     722 ..     706     723 .. 0.86
   7 ?    8.9   0.1   0.00054       1.2       3      37 ..     815     848 ..     813     851 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.6
                 HHHHHHC-SSHHHH CS
   PF00514.18 16 pLvqLLksgdeevq 29
                 +L +LL+ +++ ++
  MMETSP0890-20130614|35309_1 13 ILAALLQPNSDTIR 26
                 58888885555554 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.011
                 HHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHH CS
   PF00514.18  4 nkqavieaGavppLvqLLk.sgdeevqeeAawALs 37
                  k ++ +a +v  L+  ++ s++  v++ Aa +L+
  MMETSP0890-20130614|35309_1 32 LKPLLLKASVVSSLMTIIQnSPNAAVRQIAAVVLR 66
                 5778999*************************997 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.3
                  HHHHHHC-SSHHHHHHHHHHHH CS
   PF00514.18  16 pLvqLLksgdeevqeeAawALs 37 
                  +L++ L+++ e++++ +++AL 
  MMETSP0890-20130614|35309_1  87 ALLARLHTEPERIVRKSLAALA 108
                  68888999**********9995 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.1
                  HHHHHHC-SSHHHHHHHHHHH CS
   PF00514.18  16 pLvqLLksgdeevqeeAawAL 36 
                     ++L+++de +++  a+A+
  MMETSP0890-20130614|35309_1 382 LIARCLQDDDEATRRSGAAAM 402
                  56899******9999776665 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.009
                  HHHHHHHHC-SSHHHHHHHHHHHH CS
   PF00514.18  14 vppLvqLLksgdeevqeeAawALs 37 
                  +++L+ LL+++  +++e Aa+A++
  MMETSP0890-20130614|35309_1 505 MERLLVLLNHQLLGIREMAAAAIG 528
                  5789******************96 PP

  == domain 6    score: -0.8 bits;  conditional E-value: 0.59
                  HHHHHHHHHHHHHH CS
   PF00514.18  27 evqeeAawALsNLa 40 
                  +++++A  AL+N a
  MMETSP0890-20130614|35309_1 709 NLKKAAIVALGNAA 722
                  5799********65 PP

  == domain 7    score: 8.9 bits;  conditional E-value: 0.00054
                  HHHHHHHHCHHHHHHHHHHC.-SSHHHHHHHHHHHH CS
   PF00514.18   3 enkqavieaGavppLvqLLk.sgdeevqeeAawALs 37 
                  +  ++v e+  v  L++LL  +++++v+  A+ AL+
  MMETSP0890-20130614|35309_1 815 QLQAYVDEC--VALLIRLLIeDTSKSVVAHACEALG 848
                  555556666..***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.70u 0.42s 00:00:02.12 Elapsed: 00:00:01.50
# Mc/sec: 1875.55
//
Query:       MMETSP0890-20130614|35337_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   24.1   0.0    2.8e-05   23.5   0.0    1.3  1  PF01789.11 PsbP
  ------ inclusion threshold ------
      0.094   11.6   0.1       0.11   11.4   0.0    1.1  1  PF01946.12 Thi4 family


Domain annotation for each model (and alignments):
>> PF01789.11  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.1e-09   2.8e-05      25     115 ..       8      95 ..       3      97 .] 0.76

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.1e-09
                  EEEE-S----EEEE----....EEE--TTEEEEEE-SS-TTSEEEEEEE--SS---STT---TTT---HHHHHTTS-TT---EEEEEEEEEEEET CS
   PF01789.11  25 qayvdtkdgYeflyPsgW....tevevdGqdvvfrDliesdenvsvvvssvdkkksledlGspeevgerllkkvlaeegstreaelleaseread 115
                  ++y  t+ gY f yPs+     + v+ +  +v    + + + ++ vvv  v+ + +led+G p+ vger++k +l  +g  + a+ll+a++ +++
  MMETSP0890-20130614|35337_1   8 EEY--TGTGYTFSYPSEFalasKPVKTHLDEVL---VKQGKRQIGVVVDRVKLN-RLEDFGDPNFVGERVVKSELGRDG-VTDAQLLSADKIVKK 95 
                  556..7889999999988444333443333333...234577999******999.*********************988.889999999987765 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05      0.11     117     167 ..      32      82 ..      27      96 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
                  EEEEE-----.------EEEEHHHHT-..T---EE-EEEEEEE-------- CS
   PF01946.12 117 vaveDlivrdgervaGvvinwtlvelaglhvDPlvieakvvvdatGhdaev 167
                  + +++++v++g+r  Gvv++   +++     DP+++  +vv +  G d+  
  MMETSP0890-20130614|35337_1  32 THLDEVLVKQGKRQIGVVVDRVKLNRLEDFGDPNFVGERVVKSELGRDGVT 82 
                  567899**************9999888788****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 368.96
//
Query:       MMETSP0890-20130614|35338_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-25   85.0  12.0    2.5e-08   32.5   1.0    4.2  4  PF00036.27 EF hand
    1.1e-22   79.7   8.0    2.4e-11   43.4   1.5    2.2  2  PF13499.1  EF-hand domain pair
      3e-19   67.0  10.3    8.4e-08   31.3   0.0    4.4  4  PF13405.1  EF-hand domain
    1.5e-17   62.8  14.8    9.9e-13   47.3   0.8    4.1  4  PF13833.1  EF-hand domain pair
    2.3e-10   39.2  14.6    0.00047   19.2   0.1    4.4  5  PF13202.1  EF hand
  ------ inclusion threshold ------
      0.013   15.0   4.4       0.17   11.4   0.5    3.1  3  PF12763.2  Cytoskeletal-regulatory complex EF hand
       0.02   14.3   0.1       0.63    9.4   0.0    2.6  2  PF05042.8  Caleosin related protein
      0.028   14.5   0.5         16    5.7   0.0    3.1  3  PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
      0.046   13.1   0.7          6    6.2   0.0    2.2  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      0.089   12.2   0.1       0.14   11.6   0.1    1.4  1  PF07931.7  Chloramphenicol phosphotransferase-like protein
       0.11   12.0   0.9        9.6    5.8   0.1    2.9  3  PF00564.19 PB1 domain


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.6e-09     2e-06       1      28 [.      33      60 ..      33      61 .. 0.95
   2 !   12.2   0.0     6e-05     0.074       1      26 [.      69      94 ..      69      96 .. 0.94
   3 !   19.2   0.1   3.6e-07   0.00044       1      27 [.     106     132 ..     106     134 .. 0.89
   4 !   32.5   1.0     2e-11   2.5e-08       1      28 [.     142     169 ..     142     170 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.6e-09
                 HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealkk 28
                 e++eaF++fD+  +G I+ +E+k+a+++
  MMETSP0890-20130614|35338_1 33 EIREAFNLFDTEASGCIDIKELKAAFRA 60
                 79***********************987 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6e-05
                 HHHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkeal 26
                 el+++ + +Dk  +  I+f++f+e+ 
  MMETSP0890-20130614|35338_1 69 ELRRMLQDIDKETSANITFDDFVEMA 94
                 79**********************96 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 3.6e-07
                  HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                  e++++F++fD Dg+G Isf  +k++ +
  MMETSP0890-20130614|35338_1 106 EIMKVFALFDDDGTGAISFRNLKRVAN 132
                  799****************99998765 PP

  == domain 4    score: 32.5 bits;  conditional E-value: 2e-11
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  el+e+++e+D+DgdG I+ eEf +++kk
  MMETSP0890-20130614|35338_1 142 ELQEMIDEADRDGDGLINEEEFFRVMKK 169
                  79************************97 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.3   2.6e-13   3.2e-10       2      65 ..      34      93 ..      33      94 .. 0.94
   2 !   43.4   1.5     2e-14   2.4e-11       2      65 ..     107     166 ..     103     167 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 2.6e-13
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65
                 ++eaF+l+D+  +g +d  eL++++++lg + +  e+r++    ++++Dk  +  ++f++f+++
  MMETSP0890-20130614|35338_1 34 IREAFNLFDTEASGCIDIKELKAAFRALGFQVKKAELRRM----LQDIDKETSANITFDDFVEM 93
                 899**************************99888888888....*****************997 PP

  == domain 2    score: 43.4 bits;  conditional E-value: 2e-14
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  ++++F l+D dg+g ++   L+r+++ lg++l+d+e++e+    ++e+D +gdG+++ eEf   
  MMETSP0890-20130614|35338_1 107 IMKVFALFDDDGTGAISFRNLKRVANELGENLTDDELQEM----IDEADRDGDGLINEEEFFRV 166
                  6779*************************99999999999....*****************875 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   6.8e-11   8.4e-08       1      31 []      33      62 ..      33      62 .. 0.95
   2 ?    0.7   0.1      0.46   5.7e+02      21      27 ..      69      75 ..      64      96 .. 0.56
   3 !   21.4   0.1     1e-07   0.00013       1      30 [.     106     134 ..     106     135 .. 0.90
   4 !   17.3   0.3   2.1e-06    0.0026       2      28 ..     143     169 ..     142     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 6.8e-11
                 HHH---GCC-------B---HHHHHHH.H-- CS
    PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLrkslg 31
                 e+reaF+lfD+  +G+id++EL++a+r +lg
  MMETSP0890-20130614|35338_1 33 EIREAFNLFDTEASGCIDIKELKAAFR-ALG 62
                 79*************************.887 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.46
                 HHHHHHH CS
    PF13405.1 21 ELrdaLr 27
                 ELr++L+
  MMETSP0890-20130614|35338_1 69 ELRRMLQ 75
                 5555554 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 1e-07
                  HHH---GCC-------B---HHHHHHH.H- CS
    PF13405.1   1 elreaFklfDkdgdGkidaeELrdaLrksl 30 
                  e++++F lfD+dg+G i++  L+++ +  l
  MMETSP0890-20130614|35338_1 106 EIMKVFALFDDDGTGAISFRNLKRVAN-EL 134
                  689********************9987.55 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 2.1e-06
                  HH---GCC-------B---HHHHHHH. CS
    PF13405.1   2 lreaFklfDkdgdGkidaeELrdaLrk 28 
                  l+e  +  D+dgdG i+ eE+ ++++k
  MMETSP0890-20130614|35338_1 143 LQEMIDEADRDGDGLINEEEFFRVMKK 169
                  66667788*****************96 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00018      0.23      25      52 ..      32      59 ..      22      61 .. 0.91
   2 !   17.0   0.2   2.4e-06     0.003       2      51 ..      46      94 ..      45      97 .. 0.95
   3 !   16.1   0.5   4.5e-06    0.0056       4      44 ..      84     124 ..      81     134 .. 0.90
   4 !   47.3   0.8   7.9e-16   9.9e-13       2      53 ..     119     169 ..     119     170 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00018
    PF13833.1 25 eevdilfrefDtdgdGkisfeEFcvlle 52
                 ee+++ f++fDt+ +G i+ +E +++++
  MMETSP0890-20130614|35338_1 32 EEIREAFNLFDTEASGCIDIKELKAAFR 59
                 799*******************999886 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.4e-06
    PF13833.1  2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvll 51
                 +G+I+ +eLk a ++lg + +++ e++ ++  +D + +  i+f++F+++ 
  MMETSP0890-20130614|35338_1 46 SGCIDIKELKAAFRALGFQ-VKKAELRRMLQDIDKETSANITFDDFVEMA 94
                 79*********99999***.***************************985 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 4.5e-06
    PF13833.1   4 lItreeLkralallglkg.lseeevdilfrefDtdgdGkisf 44 
                   It++++ + +a+ ++++  +  e+  +f +fD dg G+isf
  MMETSP0890-20130614|35338_1  84 NITFDDFVE-MATPKMQSrDTRAEIMKVFALFDDDGTGAISF 124
                  7********.889999988999999999*************9 PP

  == domain 4    score: 47.3 bits;  conditional E-value: 7.9e-16
    PF13833.1   2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvller 53 
                  +G I++ +Lkr ++ lg + l+++e++++++e+D+dgdG i++eEF +++++
  MMETSP0890-20130614|35338_1 119 TGAISFRNLKRVANELGEN-LTDDELQEMIDEADRDGDGLINEEEFFRVMKK 169
                  699********88888999.******************************97 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0003      0.37       1      23 [.      34      56 ..      34      59 .. 0.90
   2 ?   -1.3   0.0       1.2   1.4e+03      19      25 .]      68      74 ..      67      79 .. 0.64
   3 ?   -3.7   0.0       6.6   8.2e+03      16      21 ..      85      90 ..      85      93 .. 0.63
   4 !   19.2   0.1   3.8e-07   0.00047       1      24 [.     107     130 ..     107     131 .. 0.92
   5 !   16.8   1.3   2.1e-06    0.0026       1      25 []     143     167 ..     139     167 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0003
                 HHHHHHHH--S----B-HHHHHH CS
    PF13202.1  1 lkdtFrafDlNgDGkIsreELkr 23
                 ++++F+ fD+  +G I+++ELk+
  MMETSP0890-20130614|35338_1 34 IREAFNLFDTEASGCIDIKELKA 56
                 6778*****************97 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.2
                 HHHHHHH CS
    PF13202.1 19 eELkrlv 25
                  EL+r++
  MMETSP0890-20130614|35338_1 68 AELRRML 74
                 5777753 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 6.6
                 B-HHHH CS
    PF13202.1 16 IsreEL 21
                 I+++++
  MMETSP0890-20130614|35338_1 85 ITFDDF 90
                 667766 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 3.8e-07
                  HHHHHHHH--S----B-HHHHHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreELkrl 24 
                  ++++F  fD +g G Is+  Lkr+
  MMETSP0890-20130614|35338_1 107 IMKVFALFDDDGTGAISFRNLKRV 130
                  6789******************98 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 2.1e-06
                  HHHHHHHH--S----B-HHHHHHHH CS
    PF13202.1   1 lkdtFrafDlNgDGkIsreELkrlv 25 
                  l+++ +++D +gDG I+ eE+ r++
  MMETSP0890-20130614|35338_1 143 LQEMIDEADRDGDGLINEEEFFRVM 167
                  5677899**************9875 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.086   1.1e+02      39      71 ..      25      60 ..      10      79 .. 0.73
   2 ?    2.6   0.2     0.077        96       8      65 ..      33      90 ..      26      98 .. 0.44
   3 ?   11.4   0.5   0.00014      0.17      37      70 ..     135     168 ..      98     173 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.086
    PF12763.2 39 kleedkleki...wdladidedgkldfeefciamrl 71
                  l+++++e+i   ++l d +  g++d +e+  a r 
  MMETSP0890-20130614|35338_1 25 GLNDEEMEEIreaFNLFDTEASGCIDIKELKAAFRA 60
                 566666665533378999999******999888874 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.077
    PF12763.2  8 eikkyweifsglkpednkltgdkvapvlknskleedklekiwdladided..gkldfeef 65
                 ei++ +++f++  +    +++ k+a      ++++ +l ++  l did++   ++ f++f
  MMETSP0890-20130614|35338_1 33 EIREAFNLFDTEASGCIDIKELKAAFRALGFQVKKAELRRM--LQDIDKEtsANITFDDF 90
                 34444444444333333333333333333334444444443..44444431145556665 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00014
    PF12763.2  37 nskleedklekiwdladidedgkldfeefciamr 70 
                    +l++d+l+++ d ad d dg ++ eef  +m+
  MMETSP0890-20130614|35338_1 135 GENLTDDELQEMIDEADRDGDGLINEEEFFRVMK 168
                  3589*************************99997 PP

>> PF05042.8  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00051      0.63       3      49 ..      28      74 ..      26     153 .. 0.70
   2 ?    2.5   0.0     0.066        81       7      37 ..     141     171 ..     135     178 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00051
    PF05042.8  3 keemsvlqkhvaffdrnkdGivyPwetyqGlralGfnvivsvvlail 49
                 +eem ++++   +fd++  G +   e    +ralGf+v  + +  +l
  MMETSP0890-20130614|35338_1 28 DEEMEEIREAFNLFDTEASGCIDIKELKAAFRALGFQVKKAELRRML 74
                 678999999999*************************9888776655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.066
    PF05042.8   7 svlqkhvaffdrnkdGivyPwetyqGlralG 37 
                   +lq+ +   dr++dG++   e ++ +++ G
  MMETSP0890-20130614|35338_1 141 DELQEMIDEADRDGDGLINEEEFFRVMKKRG 171
                  5678888888999999999999888777666 PP

>> PF13720.1  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.012        16      24      42 ..      22      40 ..      13      47 .. 0.90
   2 ?    3.5   0.1     0.059        74      32      66 ..      50      86 ..      47     100 .. 0.67
   3 ?    2.0   0.0      0.18   2.2e+02      30      74 ..     101     150 ..      91     159 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.012
    PF13720.1 24 kRrgfskeeikalkkaykl 42
                 kR g+++ee++++++a++l
  MMETSP0890-20130614|35338_1 22 KRPGLNDEEMEEIREAFNL 40
                 899**************87 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.059
    PF13720.1 32 eikalkkaykll.yr.sgltleealeeleeelaespe 66
                 +ik+lk+a+++l ++ ++ +l+  l+ +++e++++  
  MMETSP0890-20130614|35338_1 50 DIKELKAAFRALgFQvKKAELRRMLQDIDKETSANIT 86
                 699*******994442335777777777764444444 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.18
    PF13720.1  30 keeikalkkaykllyrsg.l.tleealeeleeelae...speveelldFi 74 
                  +++ +++ k++ l   +g +     +l+++++el+e   ++e++e++d  
  MMETSP0890-20130614|35338_1 101 RDTRAEIMKVFALFDDDGtGaISFRNLKRVANELGEnltDDELQEMIDEA 150
                  55666666666655555533222244566666666644477777777644 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0072         9      70     128 ..      27      84 ..      24     109 .. 0.78
   2 ?    6.2   0.0    0.0048         6      93     123 ..     122     152 ..      97     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0072
    PF07106.8  70 sdeelnkldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveei 128
                  +dee++++ +  +   +e +    +i+el+++ ++L  + +++el+  +q ++ke +++
  MMETSP0890-20130614|35338_1  27 NDEEMEEIREAFNLFDTEASG-CIDIKELKAAFRALGFQVKKAELRRMLQDIDKETSAN 84 
                  566666666666666555544.3578899999999999999999999999999998765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0048
    PF07106.8  93 qeiselekelkkLtseltteelleeiqelkk 123
                   ++++l+   ++L ++lt +el+e i+e + 
  MMETSP0890-20130614|35338_1 122 ISFRNLKRVANELGENLTDDELQEMIDEADR 152
                  678999999*****************99875 PP

>> PF07931.7  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00011      0.14      14      52 ..      67     105 ..      64     165 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
                  ----HHHHHHHSSS-EEEE--HHHHHHS-GGGGT----- CS
    PF07931.7  14 KsslaralqevldepwlhlgvDafvealppkrqdeadgl 52 
                  K+ l r lq++ +e+  ++  D fve+  pk+q+ +   
  MMETSP0890-20130614|35338_1  67 KAELRRMLQDIDKETSANITFDDFVEMATPKMQSRDTRA 105
                  77899****************************976544 PP

>> PF00564.19  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.6   3.2e+03      25      36 ..      28      39 ..      23      45 .. 0.62
   2 ?    3.7   0.0     0.035        43      17      38 ..      80     101 ..      66     117 .. 0.83
   3 ?    5.8   0.1    0.0077       9.6      58      72 ..     139     153 ..     138     170 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHHCT CS
   PF00564.19 25 eeLrskveqrfk 36
                 +e ++++++ f+
  MMETSP0890-20130614|35338_1 28 DEEMEEIREAFN 39
                 344555555555 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.035
                  EETSSS-HHHHHHHHHHHCTB- CS
   PF00564.19  17 svssnisfeeLrskveqrfkls 38 
                   +s+ni+f++++++ + ++++ 
  MMETSP0890-20130614|35338_1  80 ETSANITFDDFVEMATPKMQSR 101
                  5789*********999998885 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0077
                  SHHHHHHHHHHHHHT CS
   PF00564.19  58 sdeDLkeaveearsl 72 
                  +d++L+e+++ea++ 
  MMETSP0890-20130614|35338_1 139 TDDELQEMIDEADRD 153
                  699*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       688  (0.0503218); expected 273.4 (0.02)
Passed bias filter:                      585  (0.0427882); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 675.34
//
Query:       MMETSP0890-20130614|35342_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.26   11.1   8.7       0.32   10.8   6.0    1.1  1  PF09403.5  Adhesion protein FadA
       0.91    8.5  15.9        1.1    8.3  11.0    1.1  1  PF12072.3  Domain of unknown function (DUF3552)
        2.6    7.4  18.5          3    7.2  12.8    1.0  1  PF00769.14 Ezrin/radixin/moesin family
          3    6.4   8.8        3.6    6.2   6.1    1.0  1  PF04801.8  Sin-like protein conserved region
        7.1    4.2   8.0        7.8    4.0   5.5    1.0  1  PF01496.14 V-type ATPase 116kDa subunit family
        7.3    6.7  15.0         12    6.0  10.4    1.6  1  PF03993.7  Domain of Unknown Function (DUF349)
        7.7    5.2  11.9         12    4.5   8.3    1.4  1  PF04111.7  Autophagy protein Apg6
        8.2    4.8  10.4         12    4.2   7.2    1.2  1  PF12794.2  Mechanosensitive ion channel inner membrane domain 1
        9.5    5.6  12.1         16    4.8   5.9    1.9  2  PF06386.6  Gas vesicle synthesis protein GvpL/GvpF


Domain annotation for each model (and alignments):
>> PF09403.5  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.0   0.00021      0.32      42     113 ..      11      83 ..       3      91 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00021
    PF09403.5  42 keeaRfeeekeekeaaekevaklkelkaeleeklaklkees.ktrfykdeykkLlkkyeeylkkleekieeke 113
                  + ++R  + k+++e+ e++  + +  +a+lee   kl+ee+ +   + ++ ++++k  ee+ kk+e +++  +
  MMETSP0890-20130614|35342_1  11 RRADRERRRKKQEERQEERQEDIETNEAGLEEVSVKLREERvQLDGWSSRAQDVAKMLEEANKKIECELAALD 83 
                  5578889999999999999999****************9984567899******************9998655 PP

>> PF12072.3  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  11.0    0.0007       1.1      73     149 ..       4      85 ..       1      90 [. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0007
    PF12072.3  73 lkerrk.elqrqEkRllqkeetLdrkeeslekkeekleekekelkqkeqsle...ekeeeveelveeqreeLe.risgLtke 149
                  l+ rr+   ++ E+R +++ee+ ++++e++e  e+ lee   +l++++ +l+   ++ ++v +++ee ++++e +++ L++e
  MMETSP0890-20130614|35342_1   4 LEARRAaRRADRERRRKKQEERQEERQEDIETNEAGLEEVSVKLREERVQLDgwsSRAQDVAKMLEEANKKIEcELAALDEE 85 
                  5554441456789999999999999999999999999999999999999997332566778889999999998678888877 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  12.8     0.002         3      32     119 ..       6      93 ..       1      97 [. 0.86

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.002
   PF00769.14  32 eekaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareae 119
                   ++a++ + + ++ ++++++ e++++ +e++++ Lee + k  +e+ +L     +a+  ++ lee+++k e e + l +e     + e
  MMETSP0890-20130614|35342_1   6 ARRAARRADRERRRKKQEERQEERQEDIETNEAGLEEVSVKLREERVQLDGWSSRAQDVAKMLEEANKKIECELAALDEESSHHNDSE 93 
                  456777777788888888999999**********************************9**************999999877666555 PP

>> PF04801.8  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.1    0.0023       3.6     129     209 ..       5      87 ..       4      97 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0023
    PF04801.8 129 qlrpslqyldkkdkkkkaedtaeeeeevdeeaeeelkavtvkfsr..eterqrkrreqsaeflekkeaeetWielkyhakkde 209
                  + r+     d++  +kk+e+ +ee +e+ e++e  l++v+vk+++   +    + r q  + + ++ +++  +el   +++++
  MMETSP0890-20130614|35342_1   5 EARRAARRADRERRRKKQEERQEERQEDIETNEAGLEEVSVKLREerVQLDGWSSRAQDVAKMLEEANKKIECELAALDEESS 87 
                  678888899999999999999999999999************99832334445666666555555666666666665555544 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.5    0.0051       7.8      59     138 ..      13      92 ..       2      98 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0051
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXX.X CS
   PF01496.14  59 ekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelr.elssldeefkalraa 138
                  ++++ +++k+ e+ ee+ e++e +   +ee++ +L++e  +l  + +  +   + lee++ ++++ el+ ldee ++ +++
  MMETSP0890-20130614|35342_1  13 ADRERRRKKQEERQEERQEDIETNEAGLEEVSVKLREERVQLDGWSSRAQDVAKMLEEAN-KKIEcELAALDEESSHHNDS 92 
                  344455555777777777888888888888888888888888888888888888888864.55555788888888777644 PP

>> PF03993.7  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  10.4    0.0077        12       1      62 [.       2      67 ..       2      94 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0077
    PF03993.7  1 daLwarFkaardaffekrnaafaeldeereenlekKeaLieea.ealaestd.....wkaaterlrel 62
                 d+L+ar +aar+a  e+r++ ++e++eer+e +e  ea +ee+  +l e +      w + ++ + ++
  MMETSP0890-20130614|35342_1  2 DELEAR-RAARRADRERRRKKQEERQEERQEDIETNEAGLEEVsVKLRE-ERvqldgWSSRAQDVAKM 67
                 799999.***************************999988887333333.223455566655555555 PP

>> PF04111.7  Autophagy protein Apg6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.3    0.0081        12      74     143 ..      18      87 ..       2      98 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0081
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF04111.7  74 eLkkeeerlleeleelekeedkldeeleelqeekekleeeeeqylrelnkfklkklelekelkslelqle 143
                    kk+eer++e+ e++e++e  l+e  ++l ee+++l+    + +   + ++  + ++e el +l+ +  
  MMETSP0890-20130614|35342_1  18 RRKKQEERQEERQEDIETNEAGLEEVSVKLREERVQLDGWSSRAQDVAKMLEEANKKIECELAALDEESS 87 
                  45899********************************987666665555556666666666666666554 PP

>> PF12794.2  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.2    0.0082        12     254     302 ..       5      45 ..       2      50 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0082
    PF12794.2 254 arRrLayerakekraeilaqreeeeeedssegaaeeieepeldletisa 302
                  ++Rr a +  +e+r+++       +ee+++e  +e+ie++e  le++s 
  MMETSP0890-20130614|35342_1   5 EARRAARRADRERRRKK-------QEERQEE-RQEDIETNEAGLEEVSV 45 
                  34444444444444442.......2234444.68999****99999985 PP

>> PF06386.6  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.9      0.01        16     153     196 ..       9      52 ..       1      61 [. 0.75
   2 ?    2.6   0.0      0.05        75      89     113 ..      60      84 ..      57      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.01
    PF06386.6 153 kayllkkqlgqrleealeerrqelaeelqeaLsplaeevkenes 196
                  +a+ + ++++++ +e+++e+rqe++e+ ++ L++++++++e ++
  MMETSP0890-20130614|35342_1   9 AARRADRERRRKKQEERQEERQEDIETNEAGLEEVSVKLREERV 52 
                  33334445566679999**********************99886 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.05
    PF06386.6  89 sdesvravleenedelreaLdklag 113
                   +++v+++lee++++++ +L++l+ 
  MMETSP0890-20130614|35342_1  60 RAQDVAKMLEEANKKIECELAALDE 84 
                  5799****************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1736  (0.126975); expected 273.4 (0.02)
Passed bias filter:                      972  (0.0710942); expected 273.4 (0.02)
Passed Vit filter:                       125  (0.00914277); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.49s 00:00:01.01 Elapsed: 00:00:00.72
# Mc/sec: 329.50
//
Query:       MMETSP0890-20130614|35343_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   63.3   0.0      2e-17   63.0   0.0    1.1  1  PF01725.11 Ham1 family


Domain annotation for each model (and alignments):
>> PF01725.11  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   1.5e-21     2e-17       1      86 [.      47     129 .]      47     129 .] 0.92

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 1.5e-21
   PF01725.11   1 lvlatgNkgKlkEikailkklkievvsleeleeakieveEt.getfeenallKakaaakalgkpvlaDDsgLevdaLngaPGvysar 86 
                  + ++tgN++KlkEi ai++++++    l +  ++ ++++E  ++  e+++  K+  aa+++g pvl+DD++L+++aL+g+PG+ +++
  MMETSP0890-20130614|35343_1  47 IQFVTGNPQKLKEIMAIMEDYGLP---LPMTSRD-VDLDELqSDRAEKISAAKCALAADITGGPVLVDDTSLCLEALHGMPGPLIKW 129
                  569******************953...3555555.******9999**************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.55
# Mc/sec: 562.05
//
Query:       MMETSP0890-20130614|35345_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-44  150.7   0.0    5.4e-44  150.3   0.0    1.2  1  PF00923.14 Transaldolase


Domain annotation for each model (and alignments):
>> PF00923.14  Transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.0   3.9e-48   5.4e-44      93     286 ..       2     224 ..       1     225 [. 0.87

  Alignments for each domain:
  == domain 1    score: 150.3 bits;  conditional E-value: 3.9e-48
                  --HHHHHHHHTT-T.......TEEEEEESS----HHHHHHHH-.---EEEEEE-SHHHHHHHHH----EEEEB---TGGGT.............---------HHHHHHH---.--EEEEBS--..........SHHHHHHH----EEEE-HHHHHHHT--HHH..........................................H---HHHHHHHHHHHH- CS
   PF00923.14  93 atieeArrlialye.....kenvlIKiPateeGikAikeLkke.GinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleek.dklkgkddgvalvkeiynyykklgy.sTkvlaasfr..........nveeveelagcdtvTippdllealakhgkt..........seklek.eeieklleklfrlginedavaeelldegikkFakdlekllas 286
                  +t+++Arr+ia+ye     ++++l+Ki+ t eGi+A++ L++e +i++n+Tl+F + qa+ aa+ ++++iSpF gRi+d++k+ e+k  +  ++d+gv  v ++++yyk++gy  T  + as r           ++e+ +lag d++Tip  l+e+l ++ +           s ++++  ++  l++++frl +n+d +++++l+egi++F +++ kl+a+
  MMETSP0890-20130614|35345_1   2 ETVRRARRIIAMYEasgvsRNRILVKIAGTFEGIEAARILQAEdNIECNITLVFGFIQAVFAAQNKVRLISPFPGRILDWHKAHEKKdAYEPDNDPGVVQVIRMFQYYKRYGYqYTICMPASWRpsrglnnpefALDEIRALAGVDRMTIPQPLIEQLDASMEPlpqilkeddvSFTIPHdPKLPPLDASQFRLLLNQDLCTTTKLAEGINSFYAETLKLQAA 224
                  69***************************************7758************************************77776669999********************9899999999883333332222356777********************99987888876654455555555566******************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 882.47
//
Query:       MMETSP0890-20130614|35363_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.38s 00:00:01.10 Elapsed: 00:00:00.74
# Mc/sec: 1525.25
//
Query:       MMETSP0890-20130614|35369_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00048   19.2   0.0      0.088   12.0   0.0    2.8  3  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0     0.002        28       4      36 ..       6      38 ..       4      46 .. 0.85
   2 ?   -2.5   0.0      0.21   2.9e+03      49      67 ..     178     196 ..     174     197 .. 0.83
   3 !   12.0   0.0   6.4e-06     0.088      17      43 ..     325     351 ..     322     379 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.002
                 SSEEEEEEECTTSBHHHHHHHHHHHHTS-GGGE CS
   PF00240.18  4 sgktitlevepsdtvselKekieekegipvdqq 36
                 ++k+  l++ p +tv+el +k   ++g+pv ++
  MMETSP0890-20130614|35369_1  6 QEKHQILSLHPGTTVKELLNKCLTEHGLPVPKI 38
                 5666779999*****************998665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.21
                  SBTTTTTT-TTEEEEEEES CS
   PF00240.18  49 rtlseyniqdgstlhlvlr 67 
                  ++l++  i++++  +lv++
  MMETSP0890-20130614|35369_1 178 HSLGDNSIRPQDRFYLVFH 196
                  7899999999999998875 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 6.4e-06
                  BHHHHHHHHHHHHTS-GGGEEEEE--- CS
   PF00240.18  17 tvselKekieekegipvdqqrLiysGk 43 
                  tvs+l + i + ++++++ q+L+ +G 
  MMETSP0890-20130614|35369_1 325 TVSDLRQSITNFTNVSPEEQKLLCKGA 351
                  9**********************9994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.71
# Mc/sec: 1309.56
//
Query:       MMETSP0890-20130614|35374_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       119  (0.00870392); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 193.99
//
Query:       MMETSP0890-20130614|35371_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   39.1   0.0    2.2e-10   39.1   0.0    3.1  3  PF05557.8 Mitotic checkpoint protein
  ------ inclusion threshold ------
        1.1    8.5  11.8      0.045   13.1   1.2    2.4  2  PF07160.7 Protein of unknown function (DUF1395)
        9.1    6.0  18.6       0.56    9.9   0.2    4.0  4  PF05812.7 Herpesvirus BLRF2 protein


Domain annotation for each model (and alignments):
>> PF05557.8  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3  11.0       1.4   6.2e+03      95     246 ..      13     167 ..       2     200 .. 0.65
   2 ?    1.7   0.7      0.01        47     545     567 ..     204     226 ..     166     234 .. 0.84
   3 !   39.1   0.0   4.9e-14   2.2e-10     622     673 ..     242     302 ..     230     303 .] 0.94

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 1.4
    PF05557.8  95 astlaeeyekeldknleLev.klkaleekekkaeneaeeaeeeakllkkkldaekkklqkekedqlkeakesisviknelselqlkaq.nadlelksleseleelkeqleekqkklaeaekklqsLkseqaes.adnsvkikeLeeelksyeqev 246
                      a+ +e +++  ++Le+ +lk+ e + +   + ++e +e+  + +   ++ k++ ++ +     ++    s+ ++  s + ++a  +a  + k+le++  +lk  l++ ++  a   + l sL+    +     ++ + +L + + + ++  
  MMETSP0890-20130614|35371_1  13 LEQYAKSHEENAHLRKQLEAaQLKEDEWLGHFPSDPIKEDKEMTPAARALSEITKLQNENRQIRLELSEALASSRTNATQSAYAVEAEaEATSKCKKLETQNVHLKRDLDLALAARAVDARELASLRRLLGSTiGATDDDVTDLRNLITEASAAT 167
                  33344445555555555543123333333344466788999999888888888888887777788888899999999999999999872455678999999999999999999999888888888887655541445666777776666555544 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.01
    PF05557.8 545 srtkVlhlsenpaveaeqskket 567
                   +++V+h+  np + a ++k + 
  MMETSP0890-20130614|35371_1 204 DQVRVVHMIRNPLADAMRKKDQA 226
                  579************99776654 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 4.9e-14
    PF05557.8 622 eqrlkevFktkieeFReacyeLlGYkidi.........tpesqyrltSmYaeedddkLifk 673
                    rlke F+   + FRea+y L+G+k+++          + + +rl Sm+ae++dd+L f 
  MMETSP0890-20130614|35371_1 242 HARLKERFREHLNWFREAVYLLTGFKLEMtntstddddSTSTTVRLRSMFAENPDDALLFR 302
                  57********************************************************995 PP

>> PF07160.7  Protein of unknown function (DUF1395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.3     0.051   2.3e+02      44     115 ..      48     115 ..      39     123 .. 0.75
   2 ?   13.1   1.2     1e-05     0.045      26      99 ..     166     239 ..     153     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.051
    PF07160.7  44 rlqeqreanpkakklveaskeqledlqklkekapthlpekaqlvpqskessvlvqenekdaeaadklkeqgl 115
                   ++e++e +p a+ l+e +k q ++  +++ +++  l +  +   + ++s  +v+ +++ +++ +kl+ q+ 
  MMETSP0890-20130614|35371_1  48 PIKEDKEMTPAARALSEITKLQ-NENRQIRLELSEALASSRT---NATQSAYAVEAEAEATSKCKKLETQNV 115
                  5788999999999999988765.5557799999999996665...667777778777777777777776655 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1e-05
    PF07160.7  26 kidkelsaiellldkiekrlqeqreanpkakklveaskeqledlqklkekapthlpekaqlvpqskessvlvqe 99 
                  + dk+  a + ll +i+++ qeq  +  ++k+ v   ++q + ++ +++ ++  +++k+q+   +k   +++ +
  MMETSP0890-20130614|35371_1 166 ATDKARAAYDTLLTQIQNQQQEQIITSTHKKEAVTIAHDQVRVVHMIRNPLADAMRKKDQAHITQKDDTSVDST 239
                  4577888999********9999999*********************************9987666666555554 PP

>> PF05812.7  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00012      0.56       4      46 ..       8      60 ..       6      63 .. 0.90
   2 ?    5.2   0.4    0.0034        15      11      31 ..      64      84 ..      61     103 .. 0.81
   3 ?    1.2   0.1      0.06   2.7e+02       9      27 ..     104     122 ..      96     140 .. 0.80
   4 ?   -0.0   1.3      0.14   6.5e+02      42      56 ..     182     196 ..     154     249 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00012
                 CHHHHHHHHHHHHHHHHHHHHCHHH---............--TT--B--HHHH CS
    PF05812.7  4 tveeLaaelakLklENkaLkkklksstg..........pkespkdevLtprqk 46
                 t+e L ++ ak + EN +L+k+l+  +           ++++++d+++tp+ +
  MMETSP0890-20130614|35371_1  8 TLESLLEQYAKSHEENAHLRKQLEAAQLkedewlghfpSDPIKEDKEMTPAAR 60
                 7899999****************988777899999999899999999*99988 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHCHHH--- CS
    PF05812.7 11 elakLklENkaLkkklksstg 31
                 e++kL+ EN++ + +l +  +
  MMETSP0890-20130614|35371_1 64 EITKLQNENRQIRLELSEALA 84
                 89**********999988766 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.06
                  HHHHHHHHHHHHHHHHCHH CS
    PF05812.7   9 aaelakLklENkaLkkklk 27 
                  + + +kL+  N +Lk+ l 
  MMETSP0890-20130614|35371_1 104 TSKCKKLETQNVHLKRDLD 122
                  56789**********9986 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.14
                  -HHHHHHHHHHHHHH CS
    PF05812.7  42 tprqkealitsavsk 56 
                   ++q+e +its+++k
  MMETSP0890-20130614|35371_1 182 QNQQQEQIITSTHKK 196
                  234555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1494  (0.109274); expected 273.4 (0.02)
Passed bias filter:                      488  (0.0356934); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.43s 00:00:01.20 Elapsed: 00:00:00.95
# Mc/sec: 764.31
//
Query:       MMETSP0890-20130614|35378_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 228.22
//
Query:       MMETSP0890-20130614|35395_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.078   13.0   0.0       0.18   11.8   0.0    1.6  2  PF07384.6 Protein of unknown function (DUF1497)


Domain annotation for each model (and alignments):
>> PF07384.6  Protein of unknown function (DUF1497)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.3   4.1e+03      27      38 ..       5      16 ..       2      18 .. 0.77
   2 ?   11.8   0.0   1.3e-05      0.18       6      49 ..      27      72 ..      24      78 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.3
    PF07384.6 27 kkefeldrqskf 38
                  ++f l rq +f
  MMETSP0890-20130614|35395_1  5 VRDFVLSRQIQF 16
                 578999999887 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.3e-05
    PF07384.6  6 tknearrisklasq.nisseqtkkefeldrqs.kfnqemqaefhek 49
                 tk    r+skla    is   +    e++  s kf +e+ a fh+ 
  MMETSP0890-20130614|35395_1 27 TKRILERVSKLAPNgRISYRGNTTSTEINALSmKFCREIGAAFHNC 72
                 566668******76379*9**********98779**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:01.24
# Mc/sec: 183.59
//
Query:       MMETSP0890-20130614|35397_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-50  171.1   0.0    2.5e-50  170.7   0.0    1.1  1  PF00248.16 Aldo/keto reductase family
    1.2e-06   28.2   0.2    2.8e-06   27.0   0.1    1.6  2  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.0   3.7e-54   2.5e-50       2     281 ..      67     350 ..      66     351 .. 0.92

  Alignments for each domain:
  == domain 1    score: 170.7 bits;  conditional E-value: 3.7e-54
   PF00248.16   2 lglGtwslgndeisedealellraaleaGinlfDtAeyYgkgqseel.lgealkksrkkreeviiatKvgrispiseglsrenieesleksLkrlgtdylDllllhrpdpslp...........................sieevlealeelkkeGkirhiGvSnfsveilekakkkkkvkivvvqveynllneleeegllelcaekgvgiiaysplggGlltgkylseerkedkeprkdaqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeidel 281
                  +glG w     +i+++  ++++ +a++ G++l+D+A  Yg+     + + +al++    r+e++i+tK+       ++  ++++ e++eksL+ l++dy+Dl+l+h p  +                              +e++++ +e+ ++ G+ ++iGv n ++ +l+++++  k+k++v+qve+++l  +++++ll++++ +g++++a+s l++ ++ +  +          ++d +++++++ ++a+++ v++aq+ lr+a+  ++++++ip++s+ ++l +n++ +++ ls++e++e+d+l
  MMETSP0890-20130614|35397_1  67 VGLGCW-----KIDKAVGANTVYQAIKSGYRLIDSAADYGNEIQTGQgIRQALAEGICTRSELFIVTKL-------WNSFHSHVDEAIEKSLRDLDLDYVDLYLIHFPIHQKYvpisqryppewvdpdaafprveldhsiTYEQTWRGMERQVERGLAKNIGVCNIGTTMLQEVLNYCKIKPTVLQVEMHPL--NTQQRLLRFARTNGIQVMAFSNLASASYVELGMAT--------QSDSLLQNATVTKIAQSNSVTPAQVLLRWAV--QRGTIIIPKSSKSSRLIQNIDLFHFALSDSEMTELDNL 350
                  789999.....899999**********************444333333666888899************.......7778889*************************9999999*****************************************************************************..*************************7776444333........33357**************************..9***********************************97 PP

>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   4.1e-10   2.8e-06     223     254 ..       3      34 ..       2      38 .. 0.91
   2 ?   -2.2   0.0      0.35   2.4e+03     174     230 ..     241     317 ..     187     319 .. 0.55

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.1e-10
                  E------EEEE-TTT-BB----------S-EE CS
   PF02668.11 223 hkwqeGdlvifdNrrvlHgrtafddetgeRhl 254
                  h w++Gd++i+dN+   H+r++fd+++g+R+ 
  MMETSP0890-20130614|35397_1   3 HPWKAGDFMIIDNTVSCHSRESFDTDNGRRRR 34 
                  89*********************999999985 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.35
                  EEE---.-EEEE---TT....TB................-S---S-HH..HHHHHHHHST.....TT-EEE------E CS
   PF02668.11 174 vrthpv.tgekvlyvnplatkiqgl.............vtlaeseell..kaledhltdp.....eftyrhkwqeGdl 230
                  v+ hp  t ++ l++ + ++ iq +               +++s+ ll  + +   +++      +  +r++ q G++
  MMETSP0890-20130614|35397_1 241 VEMHPLnTQQRLLRFAR-TNGIQVMafsnlasasyvelGMATQSDSLLqnATVTKIAQSNsvtpaQVLLRWAVQRGTI 317
                  55555556666666665.555553334444444444443344444444443333333322222245556666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.40s 00:00:01.10 Elapsed: 00:00:00.59
# Mc/sec: 1523.11
//
Query:       MMETSP0890-20130614|35413_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.5   0.0         11    5.9   0.1    2.6  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1   0.00081        11       9      38 ..       3      32 ..       1      33 [. 0.90
   2 ?    5.1   0.0    0.0015        21      11      38 ..      54      93 ..      47      94 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00081
                 SSSSSEEEEEEESS.STEEEEEETTSEEEEE CS
   PF00400.27  9 gHtspVtcvafspd.gpllasgSrDgtirlW 38
                  H +++t+++++ +    l+++   + +++W
  MMETSP0890-20130614|35413_1  3 THGKSCTALSWDLTtTGALVTAAQ-NQLKIW 32
                 5889********999999999999.999999 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0015
                 SSSEEEEEEESS............STEEEEEETTSEEEEE CS
   PF00400.27 11 tspVtcvafspd............gpllasgSrDgtirlW 38
                 ++ +  +a+sp              +ll+s   ++t+ l+
  MMETSP0890-20130614|35413_1 54 EDQIIHIAWSPReinpplfalitsNKLLLSFDNNNTLTLY 93
                 788999*****99997777777777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.53
# Mc/sec: 605.87
//
Query:       MMETSP0890-20130614|35406_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   41.0   0.0    2.7e-10   39.9   0.0    1.6  1  PF00787.19 PX domain


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0     2e-14   2.7e-10      11     109 ..     106     213 ..      98     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2e-14
                  EEEE.CETSSEEEEEEEECS-.....SCEEEEEEEHHHHHHHHHHHHHHTTTSTSTS--TTSSSHHC.....GTTSHHHHHHHHHHHHHHHHHHHHSCHHHHSHHHHHH CS
   PF00787.19  11 retkgskkhsyylievelktg.....akewtvkRrYsdFeeLhskLlrkfprlklPplPkkvlfgsv.....rkkdeefiekrrkgLeeyLqrllnhpelrksevltsF 109
                  +et g+  ++ ++++v ++       ++  +v+Rr+sdF++L++ L +++ +l +Pp+P+kv+   +      ++++  +++r + L +++  l n p ++ ++++t F
  MMETSP0890-20130614|35406_1 106 PETVGNALNRHVVYRVFTEIRsvegvDTIYEVRRRFSDFVSLRESLVKRYIGLLIPPIPPKVVSM-SplsskAAEESTLVQSRLRLLSDFVDGLGNLPWIADDPIITVF 213
                  55566666777777777776677889999*********************************765.3599999999**********************99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.41s 00:00:01.29 Elapsed: 00:00:00.87
# Mc/sec: 1498.41
//
Query:       MMETSP0890-20130614|35438_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-12   47.9   0.2    1.5e-12   47.4   0.1    1.1  1  PF00664.18 ABC transporter transmembrane region
    1.5e-12   47.7   0.0    3.6e-12   46.5   0.0    1.7  1  PF00005.22 ABC transporter
    1.1e-05   25.5   0.0       0.08   12.7   0.0    2.2  2  PF13304.1  AAA domain
    0.00031   19.9   1.3     0.0024   17.0   0.3    2.4  2  PF02463.14 RecF/RecN/SMC N terminal domain
     0.0052   16.1   0.3      0.012   14.9   0.2    1.6  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.033   13.4   0.5        2.8    7.1   0.0    2.5  2  PF13481.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00664.18  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   6.5e-16   1.5e-12       9     271 ..       6     275 ..       3     277 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 6.5e-16
   PF00664.18   9 ilagvtalvfplllgrlldsvsdgnde...ersslyslailliavgvlivlllqgsfyllertgqrirkrlfrallrkilglfdsff......dknsvGellsrltnDvskirdglgdklglffqslatfvgglivmfylgwkltlvllailpllilvsavlakilkslqkkeqkayakagavaeEals.girtVkafggeekeleryekaleeakkagikkaitagllfgftqlisylsyalalwfgtflsvisgelsvgtvfaflslglql 271
                  +++ + + + p  +grl+d +s +n +   +  +  +l+  l++++ +i+++l++  +   r+ +    rl+ +++r  l   + ff       +++ ++l     +++   ++ l+++    +++ + ++ g i  + l+ +l+l l++ +p+ +++    ak  ++ q    +a a ++a  +E l+  +r V+a ++e +e + y +   +a++ ++ + ++ g+++g + +++ +++ +++  g+f+ v+sg ++ g++++f ++++++
  MMETSP0890-20130614|35438_1   6 VVSAFSNAFAPKAMGRLIDALSRHNEKcdnNSVARELLITALVFSIGAIASGLRVEAFA--RVLESSVYRLRLNVYRAALIRRSAFFdgtvaeTQRKPSDLAVIAEKETKIACSVLTEQAQNAVRFTSSVLNGGIALCNLNTRLALELVCGVPVAAIFLRSAAKAVSRRQTLAAEAEARSSARCRECLTqSMRFVRAAAAEGYEFNVYSQLCADARRLALDYGAARGAFHGLLDAFGKCAVLAIVARGGFF-VQSGLMTQGQLVSFGLYATYF 275
                  5666777788**************99988522222233333444445555555555555..6666666666666666666666666666669999*******************************************************************************************99747************************************************************.*************99998876 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.6e-15   3.6e-12       1     118 []     382     513 ..     382     513 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.6e-15
                  HHHHHHHTTSS------EEE-...--BGGGB-HHHHH...EEEE-------.--BHHHHHH----S--..........-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT.--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievd.ndrkdlesdkleklr...igyipqdpllfpeltvrenldmakeekk..........tdkrieevlekvgldelldksrvstLSgGqkqrvalArallk.kpklllLDEPtn 118
                  ST + +++g+++ ++g+i+++ ++  dl+ ++++ lr   +++ +q      + ++ + +d+  +  +          t +++ e+++ +g d++l +  +s  SgGq+ r+alAral + ++k llLDEPt+
  MMETSP0890-20130614|35438_1 382 STTFGVILGLYDADSGSIRINgHELGDLSASEIAMLRaneFSTAEQRGAVIFRGSIADAIDYPPKAYNkdyqaiqkaaTLAEVHEWASSLGYDADLGN-AGSAASGGQRARIALARALRRpDAKCLLLDEPTA 513
                  899******************667777777777777777777777766666677777777655444337788888888********************.******************9873577********6 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00015      0.35       2      25 ..     371     401 ..     370     434 .. 0.75
   2 !   12.7   0.0   3.5e-05      0.08     237     298 ..     484     544 ..     469     549 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
    PF13304.1   2 nviiGpNgsGKSnlLkaldflfr.......d 25 
                   +++G+ gsGKS+ + ++ +l++        
  MMETSP0890-20130614|35438_1 371 HGLVGKSGSGKSTTFGVILGLYDadsgsirI 401
                  689******************9865332221 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 3.5e-05
    PF13304.1 237 lSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsn.ggsQlifTTHS 298
                  +S G++  +al+ al + +   + ll+DEp + L+    +rl++ + + ++ ++ ++++  HS
  MMETSP0890-20130614|35438_1 484 ASGGQRARIALARALRRPDA--KCLLLDEPTAALDHATEERLLDNIVNYAKiHHLTVLLIAHS 544
                  49999999999988888776..99*******************87755555588888888888 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   3.4e+03      41      67 ..      44      69 ..      43     118 .. 0.78
   2 !   17.0   0.3     1e-06    0.0024      28     210 ..     372     556 ..     361     564 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.5
                 HHHHHHH------.-------TTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 41 ldAilFvLGeksakklrseklsdlihk 67
                 + A+ F +G  ++  lr e + +++ +
  MMETSP0890-20130614|35438_1 44 ITALVFSIGAIAS-GLRVEAFARVLES 69
                 6788899996555.8999888888765 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1e-06
                  EE--------HHHHHHHHHH------...-------TTSS----------EEEEEEEE.......E----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT......G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHH..HH-BTBEEEEE-S-HHHHTT-SEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  28 aivGpNGSGKsnvldAilFvLGeksa..kklrseklsdlihkskskakvksaeveitf.......dnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellk..eksknaQfivislreemlekadklvg 210
                   +vG+ GSGKs  +  i   LG  +a   ++r        +  ++   ++  e++++        ++ ++     +    i    k   + +y+  +k +t +ev+e  +s g + +      + SgG+++ +a  L  A+++ + ++l llDe  aaLD++  +++ + +   +k ++  ++ i++++  ++++d+l  
  MMETSP0890-20130614|35438_1 372 GLVGKSGSGKSTTFGVI---LGLYDAdsGSIRI-------NG-HELGDLSASEIAMLRanefstaEQRGAVIFRGSIADAIDYPPKAY-NKDYQAIQKAATLAEVHEWASSLGYDADlgnagsAASGGQRARIA--LARALRRPDAKCL-LLDEPTAALDHATEERLLDNIVnyAKIHHLTVLLIAHSRAAMARCDTLSV 556
                  57788888888877777...4432220023332.......22.233333333333322000000022222222222223333333333.347888888899999999999998888888888899*****8655..5578999999998.79***********999998887234445689999*****99999998865 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   5.4e-06     0.012      16      40 ..     362     385 ..     357     398 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.4e-06
    PF13555.1  16 tveidpkgkntlltGasGsGKSTll 40 
                  +++++ +g+   l+G+sGsGKST +
  MMETSP0890-20130614|35438_1 362 SLRVR-RGEIHGLVGKSGSGKSTTF 385
                  56665.566999***********87 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0012       2.8      29      48 ..     364     383 ..     341     390 .. 0.83
   2 ?    4.0   0.1     0.011        26     143     190 ..     503     545 ..     452     548 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0012
    PF13481.1  29 llprgsltllaGapgtGKSt 48 
                  ++ rg+++ l+G +g+GKSt
  MMETSP0890-20130614|35438_1 364 RVRRGEIHGLVGKSGSGKST 383
                  5679***************9 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
    PF13481.1 143 pdlvviDtlsrlvggdensnsdvgaviaalerlakrtgaavllvhHtg 190
                   + + +D  +++++    ++++ +++++ + + ak ++ +vll+ H++
  MMETSP0890-20130614|35438_1 503 AKCLLLDEPTAALD----HATE-ERLLDNIVNYAKIHHLTVLLIAHSR 545
                  55555555544444....2333.599********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.00u 0.39s 00:00:01.39 Elapsed: 00:00:00.78
# Mc/sec: 1843.35
//
Query:       MMETSP0890-20130614|35442_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-24   86.7   0.0    4.2e-22   78.4   0.0    2.6  3  PF00588.14 SpoU rRNA Methylase family
    4.3e-10   39.5   0.1    1.1e-09   38.1   0.0    1.8  1  PF08032.7  RNA 2'-O ribose methyltransferase substrate binding


Domain annotation for each model (and alignments):
>> PF00588.14  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.26   1.8e+03      44      86 ..      64     106 ..      50     114 .. 0.69
   2 !   78.4   0.0   6.2e-26   4.2e-22       2     131 ..     120     258 ..     119     258 .. 0.85
   3 !    5.2   0.0    0.0024        16     127     141 ..     272     286 ..     269     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.26
                  HHHHHC---TTTS--EE-S----HHHHHHHH----E------- CS
   PF00588.14  44 kakrasagalellelkvvksleealkdlkeeglkviatslkgk 86 
                  ++ +++++a   +  ++  +l++ lk+ +++g++++a  l+ k
  MMETSP0890-20130614|35442_1  64 QIEKMALEAKIDIHEIEKGKLSQNLKEARHQGIALCASRLEPK 106
                  4556666665444445667888889999999999888776655 PP

  == domain 2    score: 78.4 bits;  conditional E-value: 6.2e-26
                  ---EEES-S-------HHHHHHH------EEE-.--S-TTSHHHHHHC---TTTS--EE-S----HHHHHHHH----E----.---EGGGS-TT.........S-EEEEE--------HHHHHH-S.--EE---------- CS
   PF00588.14   2 livvldeiedpgNlGaiaRtaaafgaselilvkprsvdllnkkakrasagalellelkvvksleealkdlkeeglkviatsl.kgkslreielk.........ekvalvfGnEdkGlsnellekad.elvkIpmsgeveSL 131
                  + ++ld+i+dp+NlGai+R+a  ++a+++i+++++s+ +l+++  +asaga e + ++  ++l ++l+    + +++ia++  ++++ ++i ++          +++lv+G+E++Gl++ + e+++  +  +p  ++++SL
  MMETSP0890-20130614|35442_1 120 VWLILDQIQDPQNLGAIIRSARFLQATGVIISAKNSA-PLSPACSKASAGAMEEMLIHATSNLPRFLRSASSN-FRIIAAHYdSSSKSNSIPFHqltdtgpnaPPTLLVLGSEGSGLRKLVKEACSfSIAVLPRPKSAHSL 258
                  679****************************998877.*******************************8887.******88544444455444455667788***********************445556666666665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0024
                  ------HHHHHHHHH CS
   PF00588.14 127 eveSLNvavAvaill 141
                  + +SLNv+v++a+ll
  MMETSP0890-20130614|35442_1 272 DLDSLNVSVTAALLL 286
                  689*********987 PP

>> PF08032.7  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.6e-13   1.1e-09       1      75 [.      23     105 ..      23     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.6e-13
    PF08032.7   1 lieGlhaVeeALksgpr.iekllvteg.......radkrleellklakkkgikvqlvskkkLdklsgtvnHQGvvaevkppey 75 
                  +++G+ +V++AL++++r i  l+++ g       ++d+rl ++ k+a +++i +++++k kL +  + ++HQG+++ ++ +e+
  MMETSP0890-20130614|35442_1  23 FVYGIGPVLAALRQDRReIDALFIETGkvsssmsKKDNRLAQIEKMALEAKIDIHEIEKGKLSQNLKEARHQGIALCASRLEP 105
                  59*************889******999777667777777************************************98877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 1340.18
//
Query:       MMETSP0890-20130614|35446_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       183  (0.013385); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 296.22
//
Query:       MMETSP0890-20130614|35451_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-60  204.0   0.0    6.3e-48  163.1   0.0    2.0  2  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.9e-14   2.6e-10     116     162 ..      28      74 ..       1      90 [. 0.82
   2 !  163.1   0.0   4.6e-52   6.3e-48     203     460 ..     144     403 ..     130     405 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.9e-14
                  TTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE- CS
   PF00171.17 116 egkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKps 162
                  +++ a++  eP+Gvv+++  WNfPl+l+   la a+aaGN+vvlK +
  MMETSP0890-20130614|35451_1  28 PSNGAYLAPEPYGVVLILGTWNFPLMLSLVPLAGAIAAGNSVVLKLQ 74 
                  467789999************************************64 PP

  == domain 2    score: 163.1 bits;  conditional E-value: 4.6e-52
                  -TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TTS-HHHHHHHHHHHHHTT----TTSEEEEEEEGG..GHHHHHHHHHHHHHT-----TTSTT------SSHHHHHHHHHHHHHHHH---EEEE--EE.EE---ETTEEEEEEE......ES--TTSGGGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTT.S-B---TTTEE--BSSHHHHHHTEEEE CS
   PF00171.17 203 hpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVledaDldkaveaivkgaflnaGQvCiatsrllVhes..iydefveklveaakklkvGdpldedtdlGPliskkqlervekyieeakeegaklllGGeeekaglekgyfvePtvl......advtpdmriaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaea.lpfgGvkqSglGreggkegleeytevk 460
                  + ++d + ftGs +vg+ +a+aaak+l++++lElGGk+p++V ++++l  a+++i++g +lnaGQ C+a+  +l      +++ef ++++    +    dp +++ d+G l++ + +er++++i++  +  a++++GG      + +  +++Ptv+      +  +++++++ eEiFGP+l+++++ + + ai + N+ +  L+ ++f+++ + a+ +  +  aG +++Nd+  + a+  lpfgGv+ Sg+G+ +g + +++++  k
  MMETSP0890-20130614|35451_1 144 QCHFDLIFFTGSPSVGKIVATAAAKHLTPCVLELGGKNPVFV-DSTNLHFAAKRIIWGRMLNAGQQCVAPDYVLCAGGyqVAEEFAQACKHYIHQAFGPDP-QNSPDFGRLATTQDAERLDQWIQNLPS-SARIIAGG----FTDIQKRYIAPTVVlfpdttSPKNEEHELLSEEIFGPILPILPVTNADAAISYINARPKPLSLYIFAKNQSIARSFLVNTSAGGITVNDTIFHVAHPnLPFGGVGTSGYGAYHGDATFSAFSHSK 403
                  45899***********************************99.689*****************************9865599*********9988855555.569********************9999.89******....5788999******988875333556899**************************************************************666666668****************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.78
# Mc/sec: 1379.44
//
Query:       MMETSP0890-20130614|35458_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-34  116.7   0.0    7.5e-34  116.3   0.0    1.1  1  PF09439.5  Signal recognition particle receptor beta subunit
    2.1e-13   49.8   0.0    2.5e-13   49.5   0.0    1.1  1  PF00025.16 ADP-ribosylation factor family
    3.8e-05   22.8   0.0    5.1e-05   22.4   0.0    1.2  1  PF04670.7  Gtr1/RagA G protein conserved region
     0.0001   22.1   0.0    0.00018   21.3   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
     0.0014   17.9   0.0       0.14   11.4   0.0    2.1  2  PF00009.22 Elongation factor Tu GTP binding domain
     0.0019   17.7   0.0       0.64    9.4   0.0    2.3  2  PF05729.7  NACHT domain
     0.0028   16.7   0.0      0.012   14.7   0.0    2.0  1  PF02421.13 Ferrous iron transport protein B
     0.0029   17.8   1.6       0.03   14.5   0.1    2.1  2  PF13191.1  AAA ATPase domain
     0.0038   17.6   0.0      0.013   15.9   0.0    2.0  2  PF08477.8  Miro-like protein
      0.005   16.8   0.0      0.012   15.6   0.0    1.8  1  PF13401.1  AAA domain
     0.0051   16.1   0.0     0.0082   15.4   0.0    1.4  1  PF00071.17 Ras family
     0.0072   16.0   0.1      0.023   14.4   0.0    1.8  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.019   13.7   0.1       0.06   12.1   0.0    1.7  2  PF00437.15 Type II/IV secretion system protein
      0.046   13.1   0.5        2.8    7.2   0.0    2.2  2  PF03029.12 Conserved hypothetical ATP binding protein
      0.047   13.7   0.3       0.39   10.7   0.2    2.4  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.065   13.0   0.0       0.11   12.2   0.0    1.4  1  PF13671.1  AAA domain
      0.079   12.2   0.0       0.24   10.7   0.0    2.0  1  PF00270.24 DEAD/DEAH box helicase
      0.092   12.0   0.3       0.36   10.1   0.0    2.0  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
       0.13   12.0   0.0        1.4    8.7   0.0    2.2  2  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0     1e-36   7.5e-34       2     175 ..       9     179 ..       8     182 .. 0.92

  Alignments for each domain:
  == domain 1    score: 116.3 bits;  conditional E-value: 1e-36
                  ---EEEEE--TT---HHHHHHHHHSS-------SS-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHHHHHHHHHHHHH-----EEEEEE-TTSTT---HHHHHHHHHHHHHHHHHHHHHHHH----..--T....T--------GG CS
    PF09439.5   2 skpavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklknavdiliACnKqelflakspklikdaLEkElnkiierrskalkelde..eedksavlakkgkdFkfd 175
                  ++ ++l+vG++ sGKT+lf rL  d++ +tv S++++ +      +g  l+l+D+PGh +lr  l ++    + +++++fv D++   k++k  AElly il+  + +k ++d+l  CnK++  + k+ + +k  + +E+++++++ +   +++d+  +++++a+l+  g+ F+fd
  MMETSP0890-20130614|35458_1   9 RSASILIVGPCGSGKTLLFYRLVHDETVDTVSSMQPNESPAS--PDGLPLRLVDLPGHYRLRGLLPDE---LECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGasSSSEQAKLGIPGQFFNFD 179
                  5678******************************99988776..8******************99999...77899**********************************************************************999988887611456778899999999998 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   3.4e-16   2.5e-13      11     151 ..       7     149 ..       1     168 [. 0.81

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 3.4e-16
                  .TSEEEEEEE--TT---HHHHHHHHHS-EEEE-S--S-EEEEEEETTEEEEEEE----GGGGGCGGGGCTTECEEEEEEETT-CTTHHH.HHHHHHHHHTS..GGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSE CS
   PF00025.16  11 kkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRlee.akeeLkallee..eelkevallvlaNKqDlpealseeelrellgleelkgkrkl 151
                  +++++ il++G  ++GKt + ++l ++e+v+tv  + +n    +  +l +++ D+ G+ +lR l  + +e+ +a+ifv D++d  + ++ a e L a+l++  +      ll ++NK D +   +++ + +l+ ++e+++ rk 
  MMETSP0890-20130614|35458_1   7 RTRSASILIVGPCGSGKTLLFYRLVHDETVDTVSSMQPNESPASPDGLPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKpAAELLYAILSTfaDSKTGPDLLFICNKSDNKVVKTTQRV-KLMMMNEIETLRKT 149
                  478999*****************************************************************************9766551556678888863245557789********8776665555.55666666644333 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     7e-08   5.1e-05       2     135 ..      13     138 ..      12     168 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7e-08
    PF04670.7   2 lLLmGksgsGKtSmrsiiFsnylardtlrLgaTidveqshvrflgnlklnlwDcgGqeefvenylsrqkeeifsnvevliyVfDiesr..eleedlekfqeileallqyspeakvfvlihKmDlisedereeifee 135
                  +L++G+ gsGKt     +F +++  +t+   ++++ ++s     + l l l+D++G  ++          + ++  +++i+VfD++    + + + e +  il+   +++    +  + +K D+   ++ +++   
  MMETSP0890-20130614|35458_1  13 ILIVGPCGSGKTL----LFYRLVHDETVDTVSSMQPNESPAS-PDGLPLRLVDLPGHYRLRGL-----LPDELECAQAIIFVFDASDAlkQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLM 138
                  89**********7....9********************9996.777***********877766.....46778999**********44434666677777777777777777777777788885433333333333 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.5e-07   0.00018       2     113 ..      13     122 ..      12     159 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.5e-07
                  EEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEEETTE.EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTSHHHH...HHHHHHHHH.......HTCCCEEEEEE CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaakvsdypgtTrditenevkkek.iilvDtPGiiegasedkeiegikkylekveradvlllvvdasavlke...adkellnel.......eakkplilvln 113
                  + ivG   +GK+ L+ +L++++ + +    +  +++     +++  + lvD+PG  +      +        +++e a+++++v+das+ lk+   a  ell  +       + + +l++++n
  MMETSP0890-20130614|35458_1  13 ILIVGPCGSGKTLLFYRLVHDETVDTVSSMQPNESPAS---PDGLpLRLVDLPGHYR-----LR----GLLPDELECAQAIIFVFDASDALKQakpAA-ELLYAIlstfadsKTGPDLLFICN 122
                  78*****************8655555555566666622...3444467******542.....21....2257899***********887444323222.222222343333224444555544 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.02        14       4      29 ..      11      36 ..       8      49 .. 0.82
   2 !   11.4   0.0    0.0002      0.14      72     151 ..      56     153 ..      38     209 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.02
                 EEEEEEESTT---HHHHHHHHHHCCC CS
   PF00009.22  4 rnigiighvDhGKtTltdallykaga 29
                   i i+g + +GKt l  +l+++   
  MMETSP0890-20130614|35458_1 11 ASILIVGPCGSGKTLLFYRLVHDETV 36
                 5799****************998755 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.0002
                  EEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-...S-HHHHHHHHH....HHHTT--.EEEEEE-TTST.CHHHHHHHHHHHHHH.........H CS
   PF00009.22  72 inliDtPGHvdFskevirglrvlDgavlvvdaveG...vepqTeevlrl....akklgvk.iivviNKiDrv.eaeleeiveelkekl.........l 151
                  + l+D PGH          l+ + + + v+da++     +p  e +  +    a++   + +++++NK D+   +  ++++ ++ +++         +
  MMETSP0890-20130614|35458_1  56 LRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDAlkqAKPAAELLYAIlstfADSKTGPdLLFICNKSDNKvVKTTQRVKLMMMNEIetlrktensI 153
                  689******************************98665333333332220001333344489999*****9874555555555554443323333331 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00089      0.64       3      23 ..      13      33 ..      11      43 .. 0.88
   2 !    6.2   0.0    0.0086       6.2      77      99 ..      75      97 ..      65     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00089
    PF05729.7  3 vilqGeaGsGKTtLlqklasa 23
                 ++++G+ GsGKT L  +l+++
  MMETSP0890-20130614|35458_1 13 ILIVGPCGSGKTLLFYRLVHD 33
                 799************999975 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0086
    PF05729.7 77 lelperlLlilDglDelvsdlgq 99
                 le ++ + +++D+ D l++ +++
  MMETSP0890-20130614|35458_1 75 LECAQAIIFVFDASDALKQAKPA 97
                 577899************98887 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-05     0.012       2      75 ..      12      82 ..      11      93 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-05
                 EEEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHH CS
   PF02421.13  2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardyll 75
                 ++ +vG   +GKt lf +l    ++v   +   ++ +e   + +g  +++vDLPG Y L    ++e    + ++
  MMETSP0890-20130614|35458_1 12 SILIVGPCGSGKTLLFYRLVH-DETVDTVSS--MQPNESPASPDGLPLRLVDLPGHYRLRGLLPDELECAQAII 82
                 578999999********9987.556665554..456666667779***************99999976666554 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.2e-05      0.03      20      42 ..       6      29 ..       1      41 [. 0.79
   2 ?    3.1   0.0      0.14     1e+02     108     160 ..      58     110 ..      27     120 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.2e-05
    PF13191.1 20 segsp.lllvtGpsGiGKSsLlre 42
                 +++++ ++l++Gp G+GK+ L  +
  MMETSP0890-20130614|35458_1  6 RRTRSaSILIVGPCGSGKTLLFYR 29
                 3334459************99665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.14
    PF13191.1 108 legiiglqalvalldaalartrrpklvlvlD..DlqwadresldlLeallerlse 160
                  l +++g   l  ll++ l+ ++   +++v+D  D+     ++ +lL+a+l+  ++
  MMETSP0890-20130614|35458_1  58 LVDLPGHYRLRGLLPDELECAQ--AIIFVFDasDALKQAKPAAELLYAILSTFAD 110
                  4444444555555555555555..3******988888888899999999988655 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.8e-05     0.013       2      86 ..      13      90 ..      12     125 .. 0.78
   2 ?   -1.9   0.0       5.6   4.1e+03      89     104 ..     132     148 ..     112     161 .. 0.56

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.8e-05
    PF08477.8  2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel.lelwdlggreelkkehelllkkadaillvydltde 86
                 +++vG +g+GK+ l  +lv +e +   + + +++++          d+ l l l dl g+ +l    ++ l+ a+ai++v+d +d 
  MMETSP0890-20130614|35458_1 13 ILIVGPCGSGKTLLFYRLVHDETV--DTVSSMQPNESPA-----SPDG-LpLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDA 90
                 78********************99..5666666666652.....2233.23788888888888888777899*********99985 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 5.6
    PF08477.8  89 leevsel.lawlaelrk 104
                   ++v+ + +++++ lrk
  MMETSP0890-20130614|35458_1 132 TQRVKLMmMNEIETLRK 148
                  33333331223333333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-05     0.012       4      54 ..      10      54 ..       6     156 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
    PF13401.1  4 agilvvtGesGvGKTtllrrlarqldeeaeaaekarvv.fveapast.spkel 54
                 + +++++G+ G+GKT+l  rl+++         + ++v ++++++s  sp +l
  MMETSP0890-20130614|35458_1 10 SASILIVGPCGSGKTLLFYRLVHDE--------TVDTVsSMQPNESPaSPDGL 54
                 6689*******************87........66676444444444555555 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05    0.0082       2     126 ..      13     133 ..      12     163 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.1e-05
                  EEEE-------HHHHHHHHHSSS-SS-TTTS-EEEEEEEEEETTEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHH.HTHHHHHHHHHHHST...TTSSEEEE---TTGGGG-SS-HHH CS
   PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrslyyrdaegillvyditsresf.envkkwveeikrvae...envpivLvGnKvDleekravstee 126
                  +++vG  + GKt l +r v+d+       T+    + +e  ++   + l++ D  G  + + l +  ++ a++i+ v+d +++    + +++++  i ++     ++  ++ + nK+D +    v+t++
  MMETSP0890-20130614|35458_1  13 ILIVGPCGSGKTLLFYRLVHDE----TVDTV-SSMQPNESPASPDGLPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQaKPAAELLYAILSTFAdskTGPDLLFICNKSDNKV---VKTTQ 133
                  789****************986....55677.66778888999999*********************************887533303333555555444444766788999999999775...33333 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.2e-05     0.023      24      70 ..       9      98 ..       3     177 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.2e-05
   PF04851.10 24 ekkrglivmaTGtGKTlvaa..............................sliarlar...................kflflvprkelleqaleef 70
                 + +++liv ++G+GKTl+ +                                                          ++f+ +  + l+qa+ + 
  MMETSP0890-20130614|35458_1  9 RSASILIVGPCGSGKTLLFYrlvhdetvdtvssmqpnespaspdglplrlV------DlpghyrlrgllpdelecaqAIIFVFDASDALKQAKPAA 98
                 56899**************96666555555555555555555554333330......233333333444444445556777777777777776544 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.4e-05      0.06     128     150 ..      10      32 ..       4      39 .. 0.87
   2 ?   -1.5   0.0       1.2   8.3e+02      38      65 ..     120     147 ..     103     156 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.4e-05
   PF00437.15 128 rgnilvsGgTgsGKttllnalla 150
                    +il+ G+ gsGKt l + l++
  MMETSP0890-20130614|35458_1  10 SASILIVGPCGSGKTLLFYRLVH 32 
                  578**************999876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.2
   PF00437.15  38 ipelskaalerlisrvaalskqeisekr 65 
                  i++ s++++ + ++rv+ ++ +ei++ r
  MMETSP0890-20130614|35458_1 120 ICNKSDNKVVKTTQRVKLMMMNEIETLR 147
                  5556667777777777777777776544 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.027        19       1      16 [.      15      30 ..      15      49 .. 0.86
   2 ?    7.2   0.0    0.0039       2.8      93     193 ..      56     153 ..      31     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.027
   PF03029.12  1 vvGpaGsGKttfvgal 16
                 +vGp GsGKt +  +l
  MMETSP0890-20130614|35458_1 15 IVGPCGSGKTLLFYRL 30
                 79********887666 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0039
   PF03029.12  93 yvlfDtPGQielftlseslakiveaLesefalvvvylvDsqrltdptkfisgllsal...simlklelPhvvalnkfDllkek..lekeleffedvealqallekd 193
                  + l+D PG  +l  l+++          e a  +++++D+  + + +k   +ll+a+    +  k++  ++ ++nk D    k  ++ +l +++++e+l++++++ 
  MMETSP0890-20130614|35458_1  56 LRLVDLPGHYRLRGLLPDEL--------ECAQAIIFVFDASDALKQAKPAAELLYAIlstFADSKTGPDLLFICNKSDNKVVKttQRVKLMMMNEIETLRKTENSI 153
                  56888888888888888777........78889999999998888666666666665111567799999*********8665556888899999999998877765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00055      0.39       1      23 [.      13      35 ..      13     169 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00055
                 EEEE-------HHHHHHHHHHCT CS
   PF00004.24  1 vllyGppGtGKTllakavakelg 23
                 +l++Gp G GKTll   ++++  
  MMETSP0890-20130614|35458_1 13 ILIVGPCGSGKTLLFYRLVHDET 35
                 699**********9988877733 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.11       2      30 ..      13      41 ..      13     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00016
    PF13671.1  2 vllvGlpGsGKstlaerllkklgyvrlsq 30
                 +l+vG+ GsGK+ l  rl+ + +  ++s+
  MMETSP0890-20130614|35458_1 13 ILIVGPCGSGKTLLFYRLVHDETVDTVSS 41
                 689****************9999877776 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.24      15      50 ..      11      79 ..       5     193 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00033
                 -EEEEEC-TT---HHHHHHHHHHHHHH..H..TTSTS..................................E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx..................................x RF
   PF00270.24 15 gdvlvaaeTGsGKTlaflipvlqilletlk..kttik..................................k 50
                  ++l++++ GsGKTl f   v +   +t    +                                      +
  MMETSP0890-20130614|35458_1 11 ASILIVGPCGSGKTLLFYRLVHDETVDTVSsmQ---PnespaspdglplrlvdlpghyrlrgllpdelecaQ 79
                 57899************9988866655443221...123345555556666666666655555555555551 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0005      0.36       3      23 ..      13      33 ..      11      43 .. 0.83
   2 ?   -0.5   0.1      0.92   6.6e+02     131     131 ..     123     123 ..      74     168 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0005
                 EEEE-------HHHHHHHHCH CS
   PF02492.14  3 tvltGflGsGKTtLlekllek 23
                 + ++G+ GsGKT L  +l+++
  MMETSP0890-20130614|35458_1 13 ILIVGPCGSGKTLLFYRLVHD 33
                 679************999953 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.92
                  H CS
   PF02492.14 131 d 131
                  +
  MMETSP0890-20130614|35458_1 123 K 123
                  2 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0019       1.4       4      27 ..      12      35 ..       9      50 .. 0.84
   2 ?    1.0   0.0      0.45   3.2e+02      60      80 ..     127     153 ..      65     166 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0019
    PF13173.1  4 ilvitGpRrvGKttllkqlakell 27
                  ++i Gp ++GKt l ++l++++ 
  MMETSP0890-20130614|35458_1 12 SILIVGPCGSGKTLLFYRLVHDET 35
                 589***************998876 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.45
    PF13173.1  60 e......kkkylflDEiqevpewedal 80 
                  +      + k++++ Ei  +++ e+ +
  MMETSP0890-20130614|35458_1 127 KvvkttqRVKLMMMNEIETLRKTENSI 153
                  122222234445555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       586  (0.0428613); expected 273.4 (0.02)
Passed bias filter:                      517  (0.0378145); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.66
# Mc/sec: 766.11
//
Query:       MMETSP0890-20130614|35460_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       610  (0.0446167); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:01.05
# Mc/sec: 1430.97
//
Query:       MMETSP0890-20130614|35463_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-18   65.6   0.0    3.3e-18   65.2   0.0    1.2  1  PF02738.13 Molybdopterin-binding domain of aldehyde dehydrogenase


Domain annotation for each model (and alignments):
>> PF02738.13  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   2.4e-22   3.3e-18     474     543 .]      11      81 ..       1      81 [. 0.92

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 2.4e-22
                  TT--EEEEEEEEEEE----SSHHHH--------CCCHHHHSS---EBT.----BCTSSTTTS----TTTS- CS
   PF02738.13 474 ltGevkvlrvdavmDvGtslNPaivegQieGgfvqGiGlallEeivyd.eeGnlltrslldYkiPtiadiP 543
                  + G   +l++++v D GtslNP i+ gQ +G+fv+G+G+ ++E + +d ++G  ++ ++++Yk+P + diP
  MMETSP0890-20130614|35463_1  11 AAGPPSILKTVLVTDQGTSLNPNIDAGQAQGAFVMGLGYLTSETYSFDpKTGVNQSSGTWEYKVPSTFDIP 81 
                  458889****************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 520.26
//
Query:       MMETSP0890-20130614|35464_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-07   28.8   0.6    1.9e-06   27.3   0.0    2.0  3  PF00566.13 Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-10   1.9e-06     151     208 ..       3      68 ..       1      74 [. 0.85
   2 ?   -1.1   0.0     0.072   9.9e+02      96     119 ..      68      94 ..      65     113 .. 0.76
   3 ?   -2.3   0.1      0.16   2.2e+03      50      63 ..     221     235 ..     191     268 .. 0.52

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.4e-10
   PF00566.13 151 lykhl.ekeeldlslfaikWfltlfv..relpletvlrlwD.lfl....egakflllrialailkl 208
                  ++k l ek++l + ++ai W+ tlf+  r+lp + v rlwD lf+    ++a+ ll+ri+la+++l
  MMETSP0890-20130614|35464_1   3 VAKILdEKLGLPSVCYAIVWIQTLFAegRALPDPAVDRLWDaLFVvdspAEARALLMRIMLALISL 68 
                  677886779**999************99*************77778665444888*******9976 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.072
   PF00566.13  96 iaallLlvvldeeeafwcfvsLl...n 119
                  +++++L +v d eea +++++L    +
  MMETSP0890-20130614|35464_1  68 LLGPYLATVRDAEEALKLLQTLHnvpT 94 
                  78999999999999***9999985444 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.16
   PF00566.13  50 Ik.kDvpRtfpedel 63 
                  I+   v+ t+++de+
  MMETSP0890-20130614|35464_1 221 IEeIEVHATHHNDEK 235
                  333333333332211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.83
# Mc/sec: 831.51
//
Query:       MMETSP0890-20130614|35467_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:01.38
# Mc/sec: 145.87
//
Query:       MMETSP0890-20130614|35478_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-20   70.4   2.8    8.8e-20   70.3   1.9    1.0  1  PF02256.12 Iron hydrogenase small subunit


Domain annotation for each model (and alignments):
>> PF02256.12  Iron hydrogenase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   1.9   6.4e-24   8.8e-20      10      59 ..       2      51 ..       1      52 [. 0.97

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 6.4e-24
                 HHHCSS-HHHHTS---GGG-HHHHHHHHHT-------HHHHHHB------ CS
   PF02256.12 10 RaeaLYkiDkekklrksheNpqvkklYeeflgeplshkahelLHThYkdr 59
                 Ra+ +Y++D  ++lrksheN  v  lY+efl +pl h++helLHThYk++
  MMETSP0890-20130614|35478_1  2 RASLIYAEDHGLPLRKSHENASVRRLYDEFLVQPLAHHSHELLHTHYKAK 51
                 99*********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 216.45
//
Query:       MMETSP0890-20130614|35474_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   68.3   4.8      3e-08   32.6   0.9    3.9  4  PF00805.17 Pentapeptide repeats (8 copies)
    2.5e-14   52.7   3.6    3.5e-10   39.4   0.4    2.2  2  PF13599.1  Pentapeptide repeats (9 copies)
    1.2e-10   40.9   0.1    2.3e-05   24.0   0.0    2.6  3  PF13576.1  Pentapeptide repeats (9 copies)


Domain annotation for each model (and alignments):
>> PF00805.17  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   5.7e-09   2.6e-05       2      38 ..      64     100 ..      63     102 .. 0.94
   2 !   32.6   0.9   6.6e-12     3e-08       2      39 ..      89     126 ..      88     127 .. 0.96
   3 !   25.3   0.1   1.3e-09   5.8e-06       2      27 ..     124     149 ..     124     154 .. 0.55
   4 ?   -0.4   0.0      0.14   6.3e+02      14      24 ..     157     167 ..     155     168 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 5.7e-09
   PF00805.17   2 nLsgAnLrgAdLrgadLsgAdLtgAnLsgAnLsganl 38 
                  + +g+nL ++d rg dL g  +  + L+g+n+ g+nl
  MMETSP0890-20130614|35474_1  64 ITRGVNLDNTDWRGKDLKGVAFQQSVLRGCNFAGVNL 100
                  669*********************************9 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 6.6e-12
   PF00805.17   2 nLsgAnLrgAdLrgadLsgAdLtgAnLsgAnLsganls 39 
                   L+g+n++g++L  a + +AdL+g+++++A+++++nl+
  MMETSP0890-20130614|35474_1  89 VLRGCNFAGVNLFSASFFDADLSGSDFTNAKMQQVNLE 126
                  79**********************************97 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 1.3e-09
   PF00805.17   2 nLsgAnLrgAdLrgadLsgAdLtgAn 27 
                  nL+ A+L+++dL+gadL++A + gA 
  MMETSP0890-20130614|35474_1 124 NLEMADLSNVDLSGADLTQAYMAGAV 149
                  44445666666666666666666554 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.14
   PF00805.17  14 rgadLsgAdLt 24 
                  +++d+s+ d++
  MMETSP0890-20130614|35474_1 157 ENTDWSDVDMR 167
                  68899999988 PP

>> PF13599.1  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   4.3e-08    0.0002      41      78 .]      67     105 ..      63     105 .. 0.83
   2 !   39.4   0.4   7.8e-14   3.5e-10       2      76 ..      89     164 ..      88     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.3e-08
    PF13599.1  41 ncdlkdadfseadlknasFsncdlknvdfsg.klkdadf 78 
                  + +l+++d+ + dlk+++F+++ l++++f g +l +a+f
  MMETSP0890-20130614|35474_1  67 GVNLDNTDWRGKDLKGVAFQQSVLRGCNFAGvNLFSASF 105
                  578999999999999999999999999998877877776 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 7.8e-14
    PF13599.1   2 dfrncsFsncklkgvnFsgaelkncnFeecklfkevnFsncdlkdadfseadlknasFsncdlknvdf.sg.klkda 76 
                   +r+c+F +++l  ++F +a+l++++F+++k+ ++vn++ +dl+++d+s+adl++a   +  +k+++  ++ +++d+
  MMETSP0890-20130614|35474_1  89 VLRGCNFAGVNLFSASFFDADLSGSDFTNAKM-QQVNLEMADLSNVDLSGADLTQAYMAGAVIKDLKKiENtDWSDV 164
                  689****************************7.9*********************9777777776665443345554 PP

>> PF13576.1  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.4     7e-08   0.00032       2      47 ..      71     113 ..      65     113 .. 0.95
   2 !   24.0   0.0     5e-09   2.3e-05       1      46 [.     105     147 ..     105     149 .. 0.92
   3 ?   -3.4   0.0       1.9   8.6e+03      24      32 ..     157     165 ..     155     167 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7e-08
    PF13576.1   2 sgaeFsgsadFsnatFngsasFsnatFgnadFsgatFtgdvdFsga 47 
                  +++ ++g  d+ ++ F++s+  ++++F ++++  a F  d+d+sg+
  MMETSP0890-20130614|35474_1  71 DNTDWRGK-DLKGVAFQQSV-LRGCNFAGVNLFSASFF-DADLSGS 113
                  79999***.**********7.****************9.****986 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 5e-09
    PF13576.1   1 FsgaeFsgsadFsnatFngsasFsnatFgnadFsgatFtgdvdFsg 46 
                  F +a +sgs dF+na+ ++  + + a+++n+d+sga  t ++ + g
  MMETSP0890-20130614|35474_1 105 FFDADLSGS-DFTNAKMQQV-NLEMADLSNVDLSGADLT-QAYMAG 147
                  889******.**********.9**************999.777766 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.9
    PF13576.1  24 snatFgnad 32 
                  +n++++++d
  MMETSP0890-20130614|35474_1 157 ENTDWSDVD 165
                  455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 684.18
//
Query:       MMETSP0890-20130614|35483_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.68
# Mc/sec: 444.03
//
Query:       MMETSP0890-20130614|35486_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 295.44
//
Query:       MMETSP0890-20130614|35491_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.89
# Mc/sec: 236.94
//
Query:       MMETSP0890-20130614|35489_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-17   61.6   0.1    1.3e-16   60.8   0.1    1.4  1  PF05705.9  Eukaryotic protein of unknown function (DUF829)
     0.0017   18.2   0.0     0.0024   17.7   0.0    1.3  1  PF12697.2  Alpha/beta hydrolase family
     0.0026   17.2   0.5      0.024   14.0   0.1    2.3  3  PF00561.15 alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.087   11.8   0.0       0.11   11.5   0.0    1.1  1  PF04157.11 EAP30/Vps36 family


Domain annotation for each model (and alignments):
>> PF05705.9  Eukaryotic protein of unknown function (DUF829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   3.9e-20   1.3e-16     100     239 ..      17     145 ..       2     146 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 3.9e-20
    PF05705.9 100 pelkglvwDSaPgsghylksakafsaalpksskkklvktrallllalaltllaelllglesvasrsrkvlndlankplrapqlylySkaDeviswrdveshaeearqrgvsvtskkfedspHvahmrkhpeeYvekvvef 239
                  p+++gl++DS         +++  s  +       + + + l++   ++ ++a+l++++ sv +r+++v + l+ ++   p l l+S++D v +++d+ +++++++ rg+ vt ++f++spHv h++++p++Y++++ +f
  MMETSP0890-20130614|35489_1  17 PRIRGLIFDSPV------DWYGVPSGLSRSV----VGSDGTLAQRSIEALIHAYLAIFK-SVSQRYEQVSSFLHDHDFNIPSLWLFSDTDLVTKPDDIRKVIKKWQARGHAVTEVEFKGSPHVLHLKHFPDSYSSAISQF 145
                  677788887744......2333333332222....111456777777777788877766.5666779999999***************************************************************9988 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.9e-07    0.0024     151     223 ..      52     136 ..       3     141 .. 0.56

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.9e-07
                  --GGGG....GG------HHHHTT-.........-S-EEEEE-----HHHHHHHHHHHHHSTT....EEEEE---SSSS-...-.HH CS
    PF12697.2 151 daaalaellraalldadlrealarl.........dvPvlviageaDrvvppeearrlaealpg....arvvvlpgagHllflea.pd 223
                  + +al++++ a   + +++++++++          +P l++ ++ D v+ p+++r++ +++      ++ v+++g+ H l+l + pd
  MMETSP0890-20130614|35489_1  52 SIEALIHAYLA--IFKSVSQRYEQVssflhdhdfNIPSLWLFSDTDLVTKPDDIRKVIKKWQArghaVTEVEFKGSPHVLHLKHfPD 136
                  22333333333..3333333333321111111227***************888877766664323338999**********986466 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.087     3e+02      68      92 ..      18      44 ..      11      57 .. 0.74
   2 !   14.0   0.1   7.1e-06     0.024     161     221 ..      68     134 ..      47     142 .. 0.85
   3 ?   -1.3   0.0      0.35   1.2e+03     169     192 ..     150     173 ..     134     175 .] 0.73

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.087
                 GEEEEEEESB--..HHSHCSHSTTCHC CS
   PF00561.15 68 rvkamvllgtva..vlsdglssdvlnr 92
                 r+++++++++v+   ++ gls+ v+ +
  MMETSP0890-20130614|35489_1 18 RIRGLIFDSPVDwyGVPSGLSRSVVGS 44
                 89********97666666666655554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.1e-06
                  HHHHHHHCCHHHT..-TSSEEEEECCTTSCCHHCHHHH.HHHCSTT...EEEEEETTHHCSHHHHSC CS
   PF00561.15 161 rdlvwdvtetlkt..ilvptlvisgtdDplvpykasek.laelipk...sqlvvidgpgHlafldkp 221
                    + ++v+++l++   ++p+l++ ++ D ++++++++k +++++ +   +  v+++g+ H ++l ++
  MMETSP0890-20130614|35489_1  68 SQRYEQVSSFLHDhdFNIPSLWLFSDTDLVTKPDDIRKvIKKWQARghaVTEVEFKGSPHVLHLKHF 134
                  5677788888888889**********************888888888888************99987 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.35
                  CHHHT-TSSEEEEECCTTSCCHHC CS
   PF00561.15 169 etlktilvptlvisgtdDplvpyk 192
                  + ++ ++ + +vi++t+ ++++++
  MMETSP0890-20130614|35489_1 150 QQQRLSTTKDFVINTTSSSFTQND 173
                  445558888889999998888877 PP

>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.3e-05      0.11     134     193 ..      99     156 ..      60     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.3e-05
                  -HHHHHHHHHHGGGGT-T-EEEE-SSS-EEEEESS.CH--HHHHHHHHHT..TT---B-H CS
   PF04157.11 134 speDllkAlekleklglgiklvklgsgvlvvqttpdselsadqskileyvlseqeggvse 193
                   p+D++k ++k++  g  ++ v+++++  v++ +  + + ++ s+i ++ +++q++++s+
  MMETSP0890-20130614|35489_1  99 KPDDIRKVIKKWQARGHAVTEVEFKGSPHVLHLKH-FPD-SYSSAISQFFQHQQQQRLST 156
                  69***********************9999999999.555.89999999998888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.82
# Mc/sec: 511.42
//
Query:       MMETSP0890-20130614|35492_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       398  (0.0291106); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.61
# Mc/sec: 597.13
//
Query:       MMETSP0890-20130614|35504_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.034   13.7   0.0    1.4  1  PF04517.7 Microvirus lysis protein (E), C terminus


Domain annotation for each model (and alignments):
>> PF04517.7  Microvirus lysis protein (E), C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.5e-06     0.034       3      22 ..      41      60 ..      39      62 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-06
    PF04517.7  3 vSsWkalsLaKTlsMassar 22
                 + +W+alsL  T + a sar
  MMETSP0890-20130614|35504_1 41 ARLWRALSLGDTALIAASAR 60
                 669****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.87
# Mc/sec: 490.29
//
Query:       MMETSP0890-20130614|35520_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.46s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 590.53
//
Query:       MMETSP0890-20130614|35519_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.7   0.3      0.092   12.3   0.2    1.1  1  PF07543.7 Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> PF07543.7  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.8e-06     0.092      77     132 ..      40      95 ..      20     101 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.8e-06
    PF07543.7  77 levedtddEedeedvaeasavaeWGkkARkrqrkvikklleeeekkredaeddede 132
                   + e ++d  d++d ++  +++ W + AR+r   +++    e +k+ e+ e+d d 
  MMETSP0890-20130614|35519_1  40 SDDECANDNPDSSDDDSVFSEPAWSQVARRRSDIKRRATVFETNKEAEKVENDVDL 95 
                  2333334444555666777899*********8777776666666666664455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:01.05
# Mc/sec: 401.68
//
Query:       MMETSP0890-20130614|35524_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-36  124.4   0.0    4.7e-36  124.2   0.0    1.1  1  PF00557.19 Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> PF00557.19  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   3.5e-40   4.7e-36       2     203 ..      36     273 ..      35     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 124.2 bits;  conditional E-value: 3.5e-40
                  HHHHHHHHHHHHHHHHHHH---.......--BHHHHHHHHHHH...HHHTTTTCGCS-SCCEEEECCCCE-----S-B...-----EEEEEEEEEETTEEEEEEEEEE--..GHH-........HHHHHHHHHHHHHHHHHH---.--BHHHHHHHHHHHHHT..-E.E--S-------...-SS-S--.-SS..............TT---B-----EEEE------TTTS-EEE-BEEEE- CS
   PF00557.19   2 lirkAgriaaaaleavlreikp.......gvterelaalieaa...lkregakgqafppivasgenaallhytpndrv...lkdgdlvlldvgaeydgyasditrTvvvg..ftpe........qrelyeavleaqeaaiaavkp.GvtlseihaaaekvleegGlseffphglGHgvg..levhdeps.vsr..............kgrgrkleegmvftiePgiyfapgeggvriedtvlv 203
                   +r+A+  +aa+l ++++++++        ++e+++a++i++    ++ e+++g +fp+i +sg+naa++hy+p+ ++   +  + ++l+d ga+y   ++ditrT+++g  ++ e        +   y++vl ++ ++ +  +p G+++ +++a+a++ l+++G+  +f hg+GHg+g  l+vh+ p  +                +     +  g  +++ePgiy +++++g r+e ++lv
  MMETSP0890-20130614|35524_1  36 GLRQAQIRDAAVLCTFFAWLEEeimnkkqNISEAQAADKITKLrslFI-EQYRGDSFPTISSSGANAAIIHYQPTHENcsmISSNNIYLCDTGAQYIDGTTDITRTIYIGggEEGEnnvhpsvdALLCYTLVLMGHIDLARINFPdGISGLQLDAIARAPLWTQGF--DFNHGTGHGMGayLNVHEGPMgIGGgalpasklsnaaklR-YLSDIHSGYYLSNEPGIY-IDNKFGFRLESDLLV 273
                  589**************99997333333357**********7766334.479********************9954445569*************************887673332455667766669*************99999****************99**..89**********99***99753222344444444444431.334578************.88999*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.47s 00:00:01.10 Elapsed: 00:00:01.43
# Mc/sec: 536.25
//
Query:       MMETSP0890-20130614|35543_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-13   48.9   0.1      6e-09   36.1   0.0    2.4  2  PF00856.23 SET domain
     0.0084   15.7   0.0      0.015   14.8   0.0    1.3  1  PF02773.11 S-adenosylmethionine synthetase, C-terminal domain
  ------ inclusion threshold ------
      0.099   12.4   0.0       0.19   11.5   0.0    1.5  1  PF03369.8  Herpesvirus UL3 protein


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0001      0.47       1      99 [.      87     280 ..      87     292 .. 0.84
   2 !   36.1   0.0   1.3e-12     6e-09     116     163 ..     314     359 ..     296     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0001
                  ----EESS-B----EEEEECCCEEECCCCHH................................................................................................................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   1 GrGvfAtedipkGefvceyvgelltddeaek.................................................................................................................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkat 99 
                  G G++A+ed+ ++e +++ ++ + t  + ++                                                                                                                 + +a  ++++ ++l+   a  +                  l+a++ +l+s+ +a ++++ s  ++++ 
  MMETSP0890-20130614|35543_1  87 GIGLYASEDFHANEQIFVERALVATVVQGSVracglccrslvaideiilkreptqierdawpvpvpggrckycdtwfcqqcehdpyccavkaslnalgsmdvnnppaaallsavisarpslkvefdhsslcgkikdtyelglekYLGALCNKEGNNDLTSLLAQTA------------------LNAFEVKLASPFDALYHQLASRYGRGSK 280
                  89*********************99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888887777776666666666666666666666..................8888888888888888888887777765 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 1.3e-12
                  EE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 116 llgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                  + + +a+ +NH+C pN++++  f  ++p v+++A  dIpkG+Elt++Y
  MMETSP0890-20130614|35543_1 314 GVFTLASCINHDCKPNCFASGGF--NEPQVEIIAGVDIPKGTELTLSY 359
                  67889******************..*********************** PP

>> PF02773.11  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.4e-06     0.015      14      80 ..      79     143 ..      70     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.4e-06
                  -TTTT-----------------TT-HHHHHHHHHHHHHHHHH-----SEEEEEEE------S-SEEE CS
   PF02773.11  14 kiivdtygglaahgggafsgkdatkvdrsaayaaryvakslvaaglakrclvqlsyaigvaeplsil 80 
                   i vd ygg++ +    f   ++  v+r  a +a  v  s+ a+gl+ r lv +   i   ep+ i 
  MMETSP0890-20130614|35543_1  79 DICVDEYGGIGLYASEDFHANEQIFVER--ALVATVVQGSVRACGLCCRSLVAIDEIILKREPTQIE 143
                  489***********************99..78999*******************9999999998886 PP

>> PF03369.8  Herpesvirus UL3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.19      41     120 ..       6      86 ..       2     107 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.2e-05
    PF03369.8  41 ktssfsgaaarkkkrkkkekrekrsnkslq.mfvlckrahakrvreqlkkviqarkprkyytrssdGrtrPavPvfvyefv 120
                   tss+++++ ++ +++ ++  +++++ s + m  + k++   ++   l + +++ ++ + ++ + dG ++P v + v e+ 
  MMETSP0890-20130614|35543_1   6 DTSSLCSEEEEEDESEVAKISSESQRLSRKkMVCFQKKEANYKLIPGLTSEVRCARSARAVACTRDGLAQPKVDICVDEYG 86 
                  599999997777776665555555555554155555555556899999999999999999*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       570  (0.041691); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:01.20
# Mc/sec: 770.83
//
Query:       MMETSP0890-20130614|35544_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-05   22.8   1.2     0.0026   17.5   0.1    3.2  3  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.048   13.3   0.0        2.1    8.1   0.0    3.2  3  PF13181.1  Tetratricopeptide repeat
      0.059   12.4   0.0       0.41    9.6   0.0    2.1  1  PF00069.20 Protein kinase domain
       0.11   12.3   4.7        1.4    8.8   0.0    3.7  4  PF07719.12 Tetratricopeptide repeat
        2.5    8.8   7.1         27    5.6   0.1    4.7  5  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.2   8.8e+03       2      14 ..      36      48 ..      34      55 .. 0.53
   2 !   17.5   0.1   9.7e-07    0.0026      10      75 ..     275     339 ..     268     342 .. 0.89
   3 ?    2.4   0.1     0.047   1.3e+02      26      75 ..     374     424 ..     349     431 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.2
    PF13424.1  2 pdlatilnnlalv 14
                 p++ +il++lal+
  MMETSP0890-20130614|35544_1 36 PEVLDILSRLALA 48
                 3445555555554 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 9.7e-07
    PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                    + +l   g  d+A  ++ +al l++ + d++ + ++al   a   +++g+++ A++ylek+++ 
  MMETSP0890-20130614|35544_1 275 DVGMILVNAGLIDKAKIWFDEALRLAAYTNDEDIQ-CSALMAAASGAAQAGEFQFAVQYLEKVVTS 339
                  678889999****************9999999988.89************************9875 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.047
    PF13424.1  26 elyekalellrelgddhpdtara..lnnlanlylalgdydeAleylekAlei 75 
                  + y +al  lr l++  p +a++  l+  a +  ++++ + Al++  +A ei
  MMETSP0890-20130614|35544_1 374 KAYDEALIALRALRN-GPSIADVpiLFVAAKAASKHKQSSLALDLASQAQEI 424
                  556666666555532.233333333777777777777777777777777666 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2   5.5e+03       2      19 ..     134     152 ..     133     167 .. 0.67
   2 ?    8.1   0.0   0.00078       2.1       4      32 ..     273     301 ..     270     304 .. 0.86
   3 ?    0.8   0.0      0.17   4.7e+02      19      31 ..     328     340 ..     321     343 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2
                  --TTT---H.HHHTT-HHH CS
    PF13181.1   2 kayynlGdi.YrqlGdydk 19 
                  +++++++++ Y+q +++++
  MMETSP0890-20130614|35544_1 134 EVWLLRACAkYLQINEFKE 152
                  5788888888888777754 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00078
                  TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkp 32 
                  ++  G+i+ + G +dkAk  + +al l+ 
  MMETSP0890-20130614|35544_1 273 CCDVGMILVNAGLIDKAKIWFDEALRLAA 301
                  56679********************9985 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.17
                  HHHHHHH---HHH CS
    PF13181.1  19 kAkeylekalelk 31 
                   A +ylek++   
  MMETSP0890-20130614|35544_1 328 FAVQYLEKVVTSR 340
                  599******9876 PP

>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00015      0.41     163     231 ..      32     172 ..      23     237 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00015
                  GGS-HHHHH.................TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.......................................................H CS
   PF00069.20 163 eYmAPEvll.................kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.......................................................e 231
                   Y++PEvl                  + +   +++D+W++Gv+  +l++ + + + ++ + + +++ ++l     e+  +   +                                                         
  MMETSP0890-20130614|35544_1  32 AYRSPEVLDilsrlalarnkkefddvRLDLSPAQSDIWAYGVLALNLFEPRRLRYCAQYNYEPNFFSNTLIDIRGENALDAFLTYctkerccvvmdkssketevwllracakylqinefketaevlldsllkannakqlnG 172
                  7999999777788999999998887766777899**************966443333233333333332222222221111111122234444444444445567777777777777777444444444444444444440 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00053       1.4       5      31 ..     274     300 ..     271     301 .. 0.90
   2 ?    3.4   0.0     0.029        79       3      28 ..     312     337 ..     310     339 .. 0.87
   3 ?   -2.0   0.1       1.5   4.2e+03      17      24 ..     376     383 ..     371     386 .. 0.64
   4 ?   -3.1   0.1       3.5   9.5e+03       5      29 ..     399     423 ..     397     424 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00053
                  HHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAleld 31 
                  +  G+++ ++g  ++A+ +f++Al+l+
  MMETSP0890-20130614|35544_1 274 CDVGMILVNAGLIDKAKIWFDEALRLA 300
                  567999*******************96 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.029
                  HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                  al++ +  ++++g+++ A++++ek++
  MMETSP0890-20130614|35544_1 312 ALMAAASGAAQAGEFQFAVQYLEKVV 337
                  6777888899*************975 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.5
                  HHHHHHHH CS
   PF07719.12  17 yeeAleaf 24 
                  y+eAl a+
  MMETSP0890-20130614|35544_1 376 YDEALIAL 383
                  66666655 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 3.5
                  HHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAle 29 
                  +  ++a+ k ++   Al++  +A e
  MMETSP0890-20130614|35544_1 399 FVAAKAASKHKQSSLALDLASQAQE 423
                  5667788888888888888888876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.8     1e+04      22      38 ..      31      42 ..      20      56 .. 0.53
   2 ?    0.2   0.0      0.54   1.5e+03       3      31 ..     135     165 ..     133     170 .. 0.65
   3 ?    2.5   0.0     0.098   2.7e+02      10      31 ..     279     300 ..     275     310 .. 0.79
   4 ?    5.6   0.1    0.0098        27       3      29 ..     312     338 ..     311     352 .. 0.87
   5 ?   -1.5   0.0         2   5.4e+03      17      29 ..     376     387 ..     355     396 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.8
    PF13428.1 22 allrralalaPddaeal 38
                 +++r     +P+ +++l
  MMETSP0890-20130614|35544_1 31 QAYR-----SPEVLDIL 42
                 4443.....24434433 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.54
    PF13428.1   3 allalara.llalGdpde.Aiallrralala 31 
                  ++l++a a +l+ ++++e A+ ll+ +l+++
  MMETSP0890-20130614|35544_1 135 VWLLRACAkYLQINEFKEtAEVLLDSLLKAN 165
                  5665554447777777653777888887764 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.098
    PF13428.1  10 allalGdpdeAiallrralala 31 
                  +l ++G  d+A  ++++al+la
  MMETSP0890-20130614|35544_1 279 ILVNAGLIDKAKIWFDEALRLA 300
                  78899*************9865 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0098
    PF13428.1   3 allalarallalGdpdeAiallrrala 29 
                  al+a a   +++G+++ A+++l++++ 
  MMETSP0890-20130614|35544_1 312 ALMAAASGAAQAGEFQFAVQYLEKVVT 338
                  78899999****************975 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 2
    PF13428.1  17 pdeAiallrrala 29 
                  +deA+ +lr++ +
  MMETSP0890-20130614|35544_1 376 YDEALIALRAL-R 387
                  56666666654.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.37s 00:00:01.28 Elapsed: 00:00:01.34
# Mc/sec: 1074.78
//
Query:       MMETSP0890-20130614|35556_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-44  151.2   1.3    2.7e-44  151.1   0.3    1.4  2  PF01207.12 Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> PF01207.12  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.3     2e-48   2.7e-44      10     254 ..       3     242 ..       1     252 [. 0.87
   2 ?   -2.7   0.0      0.14   1.9e+03      35      66 ..     301     335 ..     283     342 .. 0.71

  Alignments for each domain:
  == domain 1    score: 151.1 bits;  conditional E-value: 2e-48
   PF01207.12  10 dlpfRellrevgatdlvvtemvtakaivreekvtirmlseleeetplalQllgsdpallaeaAklvad..lgadeIDlNvGCPakkvtkggaGaaLlrkpdlvaqivkavvkave.ipvtvkirigiddskenalelarrveaaGaqaltvHgRtraqnyegtadweaIkevkqavs..ipviaNGdikdaedaqailaetGadgvMigrgalgnPwlfaestavktgeaepapp.laeeaeiveehlkkl 254
                  + +fRel+ ++g++ l++++m+ a ++ ++ ++ ++ ++ +  ++  ++Ql+  d+a + + A++ ++   g+ +IDlN+GCP  ++ +g++G++L + +++   iv+++++a++ i vtvkiri+  ++ e + ++a  + ++Ga  +++HgR+++q++ g+a+w+ I+    a++   pv+ NG+i++++d++ +l  tGa gvM+++++l  P+lfa      t++  + +    e+++i++ h++ l
  MMETSP0890-20130614|35556_1   3 ECAFRELIYRYGCD-LAYSPMLLASEMKKK-DYWHQYVELDIGDSRCVVQLGVGDAAIAGDMARRIEQncVGVVAIDLNLGCPERTAERGHFGSFLNAREAC--IIVRTIAQALRrIVVTVKIRIQ--ETPEATARYALELVRSGACCVAIHGRSQKQKSVGPANWDHIATTVSALRtlAPVFCNGNIRSRKDVETALTITGAAGVMVAEALLAIPTLFA-----PTSRSTSVQLiSLEYLNICKTHASSL 242
                  668***********.***********9766.555555555556699******************99987899************************776655..59********977788887765..669999*******************************************999***************************************8.....44444444444677777777777765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.14
   PF01207.12  35 aivreekvtirmlseleee...tplalQllgsdpa 66 
                  +++ ++   i+m+s+ e+e     l++Qll+  ++
  MMETSP0890-20130614|35556_1 301 DLLSDHSLEIQMVSATEQElsdIVLRVQLLAVPKK 335
                  55556666777777777776667888888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:01.19
# Mc/sec: 714.88
//
Query:       MMETSP0890-20130614|35563_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-15   57.1   0.8    3.2e-14   52.4   0.5    2.2  1  PF01078.16 Magnesium chelatase, subunit ChlI
    1.6e-15   57.5   0.2      3e-15   56.6   0.1    1.4  1  PF13519.1  von Willebrand factor type A domain
    4.1e-07   29.5   0.1    0.00013   21.3   0.0    2.4  1  PF00158.21 Sigma-54 interaction domain
      2e-06   27.5   0.0    3.5e-06   26.7   0.0    1.3  1  PF00092.23 von Willebrand factor type A domain
    1.3e-05   24.8   0.1     0.0012   18.5   0.0    2.5  2  PF07728.9  AAA domain (dynein-related subfamily)
    1.4e-05   24.0   1.8      4e-05   22.4   0.0    2.5  3  PF00493.18 MCM2/3/5 family
    6.9e-05   22.4   0.1    0.00017   21.1   0.0    1.7  1  PF13768.1  von Willebrand factor type A domain
    0.00092   19.5   0.4      0.012   15.8   0.1    2.7  2  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.014   14.6  12.8      0.026   13.7   8.8    1.4  1  PF05308.6  Mitochondrial fission regulator
       0.24   11.1  18.3       0.72    9.5  12.7    1.8  1  PF05887.6  Procyclic acidic repetitive protein (PARP)
        2.1    6.3   9.0        3.1    5.8   6.2    1.1  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.5   2.6e-17   3.2e-14       2     159 ..      83     268 ..      82     278 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.6e-17
   PF01078.16   2 lkdvkGqeeakraleiaaaGgH..nlllvGppGsGKtmlakrlpsllpplse................eealevakiasvagkkeeekllkrrpfraphhsaskaalvGg.........gs.kpkpGeislahnGvLfLDElpefkrkvleaLRePledgevtisrakakveyparfqlvaamNpc 159
                  l+ v+Gqe+ k al +aa  +    +l+ G  G+ K+++a+ l++llpp+++                +  l ++ i+s ++ +  e+ + ++pf++   ++ +  lvG+         g+   +pG +++ah+GvL++D++  +++++ ++L + l dg v+++r   +v+y ++  lva+ Np 
  MMETSP0890-20130614|35563_1  83 LSMVIGQEAIKSALLLAAVNRDmgGVLISGGRGTAKSVMARGLHALLPPIEKikgsaynvdpampeemDSELRAKLIESGQNLEDLETEIVEAPFVQIPLNVMDDMLVGSidveqsvqtGQaVFQPGLLARAHRGVLYVDDVNLLDSEATNILLQVLSDGFVVVEREGVSVKYACKPLLVATFNPE 268
                  6789**************98752269**********************9875322222222222211122355667888888889999999*******9999999***97666655555333779***********************************************************95 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.1   2.4e-18     3e-15       2     165 ..     567     755 ..     567     762 .. 0.71

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 2.4e-18
    PF13519.1   2 lvlvlDvSgSMnaedvsptrldaakaalkdllde.lp.gdrvglvafsg.saelvapltsdraalkaalnsldprlmpgggtnlaaalalalellakad....grraaivlvtDGedn..................ssdie.......aasalkra.gikiyvvgvgsdega...eallkelaeatggryfda.ssdaeel 165
                  +++v+D+SgSM+       r++aak a+ +ll e ++  d+++l+ f+g  ae+++p+t + a  k  l+ +      ggg++la al  a++   +a+     ++ ++v ++DG +n                  +   +        ++++k+   i+ +++   ++e+    + l ke+aea  g+yf++ +++++++
  MMETSP0890-20130614|35563_1 567 IIFVVDASGSMALN-----RMQAAKGAALSLLTEaYQsRDQIALIPFQGeTAEVLVPPTRSIALTKKRLETMAC----GGGSPLAHALSVAARTGLNAQksgdVGKVVVVCIGDGRANvpldvslgnadppepgtkP---DrqalkdeLINTAKQLaSIPGFSLLMLDTENKfvsTGLAKEIAEAAMGKYFKLpKTTDAAV 755
                  79**********86.....*************99755388*********569***********99999999996....6*********98887654333344367778999****6665555555554444444442...02224445444554331466666666655555554899**************943333444 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00013      23     139 ..     106     263 ..      86     283 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.1e-07
                  S-EEEE-------HHHHHHHHH....................................TSTTTTS--EEEETTTS-HHHHHHHH--...----------S-----TTTG----EEEET-----HHHHHHHHHHHH--..-BE------EB-----EEE CS
   PF00158.21  23 ltvlitGesGtGKellAraihe....................................askrkkkpfvavncaaipeeLleseLFG...hekGaFtGAekekkGlfekadgGtLfLDeigelplelQekLlrvlqeg..everlGsekeikvdvriia 139
                    vli G  Gt K+++Ar +h+                                    + +  ++++v+    +ip ++++  L G   +e+   tG    + Gl+ +a+ G+L++D+++ l+ e+ + Ll+vl +g   ver G + +  ++  ++a
  MMETSP0890-20130614|35563_1 106 GGVLISGGRGTAKSVMARGLHAllppiekikgsaynvdpampeemdselrakliesgqNLEDLETEIVEAPFVQIPLNVMDDMLVGsidVEQSVQTGQAVFQPGLLARAHRGVLYVDDVNLLDSEATNILLQVLSDGfvVVEREGVSVKYACKPLLVA 263
                  56899999999999999999999999999999999999999999999988888877663333445566666666677777777777333689999***************************************998223456665555555555554 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.8e-09   3.5e-06       2     116 ..     567     675 ..     567     682 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.8e-09
                  EEEEEE-STTS-HHHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEE.EEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEE.E-----C CS
   PF00092.23   2 ivfvlDgSgSigeenfekvkefikkliekldigpdsvrvglvqyssdak.tevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvil.lTDGksn 116
                  i+fv+D+SgS+  ++++++k ++ +l+   + ++ +++++l+ + +++  + v+ +++ +   l ++   +    ggg+ ++ AL+ a++   +       ++ kvv++ + DG++n
  MMETSP0890-20130614|35563_1 567 IIFVVDASGSMALNRMQAAKGAALSLLT--EAYQSRDQIALIPFQGETAeVLVPPTRSIA---LTKKR-LETMACGGGSPLAHALSVAARTGLNA--QKSGDVGKVVVVcIGDGRAN 675
                  89**************************..56*************998857777777644...44444.6778889***********99996654..45555655555515566665 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.031        39       1      23 [.     107     129 ..     107     150 .. 0.85
   2 !   18.5   0.0   9.3e-07    0.0012      30     139 .]     178     280 ..     168     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.031
                  EEEEE------HHHHHHHGGGGB CS
    PF07728.9   1 dvlLvGppGtgKselaerlaeal 23 
                  +vl+ G  Gt+Ks +a+ l ++l
  MMETSP0890-20130614|35563_1 107 GVLISGGRGTAKSVMARGLHALL 129
                  58999************999998 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 9.3e-07
                  EE--TT--HHHH---B--.............--------G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT-TTHHHHTT- CS
    PF07728.9  30 vqltrdtteedlkgrreia....ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslnelspalrsRf 139
                  vq++ +   + l+g+++++     g+++++++ l ra r   +l++D+v+ ++se++n+Ll++l++  + ++  g  vk + +        ++at np +    e+   l++Rf
  MMETSP0890-20130614|35563_1 178 VQIPLNVMDDMLVGSIDVEqsvqTGQAVFQPGLLARAHR--GVLYVDDVNLLDSEATNILLQVLSDGFVVVEREGVSVKYACK------PLLVATFNPEE---GEMRDHLLDRF 280
                  56666667788999999998888999********98866..7*************************9999888888877765......79999999999...55567888887 PP

>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.32   3.9e+02      26      77 ..      86     125 ..      63     139 .. 0.67
   2 !   22.4   0.0   3.2e-08     4e-05     101     178 ..     195     272 ..     191     284 .. 0.94
   3 ?   -3.3   0.5       2.2   2.7e+03     302     326 ..     368     392 ..     365     393 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.32
   PF00493.18  26 iyghedvkkaillqlfggvkkkledktklrgdinvllvGdpgtaKSqlLkyv 77 
                  ++g+e++k a+ll+ +   ++             vl+ G  gtaKS + + +
  MMETSP0890-20130614|35563_1  86 VIGQEAIKSALLLAAV---NR---------DMGGVLISGGRGTAKSVMARGL 125
                  6667777777666543...22.........2223777777777777766555 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 3.2e-08
   PF00493.18 101 vvrdketgefvleaGalvladkGvcciDefdkmkeedrtalhEamEqqtisiaKAGivatLnartsvlaAanPkggry 178
                  v ++ +tg+ v++ G l  a++Gv+++D+++  + e ++ l+ ++ ++ + +++ G+ ++  ++  ++a+ nP++g+ 
  MMETSP0890-20130614|35563_1 195 VEQSVQTGQAVFQPGLLARAHRGVLYVDDVNLLDSEATNILLQVLSDGFVVVEREGVSVKYACKPLLVATFNPEEGEM 272
                  6677899*******************************************************************9975 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 2.2
   PF00493.18 302 lseAlArlrlsevvteedveeairl 326
                  +++A A l+ +++v++ed + a++l
  MMETSP0890-20130614|35563_1 368 VARANAALNSRSEVSAEDLKLAVKL 392
                  6889999*************99987 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07   0.00017       3     105 ..     567     668 ..     565     681 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.4e-07
    PF13768.1   3 vVivvDvsssmsgepvelvk.daLsailrsLpprdkvnvvlfgt.earplfpgsravssaelqellqkvkeleadlGasnlegaLkealrqp...akpgearhvllls 105
                  +++vvD+s+sm  + ++++k +aLs++ ++ ++rd+++++ f   +a+ l p  r++       +++ ++++    G+s l+ aL  a+r+    +k+g + +v++++
  MMETSP0890-20130614|35563_1 567 IIFVVDASGSMALNRMQAAKgAALSLLTEAYQSRDQIALIPFQGeTAEVLVPPTRSIA-----LTKKRLETMAC-GGGSPLAHALSVAARTGlnaQKSGDVGKVVVVC 668
                  89************987777579*******************6615555558777665.....46778899877.9**********9999656677888888888777 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     1e-05     0.012       3     157 ..      87     241 ..      86     246 .. 0.57
   2 ?   -0.6   0.0       1.1   1.3e+03     120     156 ..     551     598 ..     499     606 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1e-05
    PF13191.1   3 vGRereleaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa...lrellrqlltelaaelggwreallaalga.............lipelegiiglqalvalldaalartrrpklvlvlDDlqwadresldlLealler 157
                  +G e+ ++aLl a  +   g   +l++G +G+ KS+++r l++  ll   +++ g  + +               +++ lr+ l e++++l++ ++++ +   a             l   ++  ++ q   a+ ++ l  +++ + vl +DD+  +d+e+ + L+ +l+ 
  MMETSP0890-20130614|35563_1  87 IGQEAIKSALLLAAVNRDMG--GVLISGGRGTAKSVMARGLHA--LLPPIEKIKGSAYNVDPA--------MpeeMDSELRAKLIESGQNLEDLETEIVE---ApfvqiplnvmddmLVGSIDVEQSVQTGQAVFQPGLLARAH-RGVLYVDDVNLLDSEATNILLQVLSD 241
                  58888888888444433333..8***************99443..444455555444433333........11123333333333333333333333333...35656666776666444444444444444444444444443.39***************999999887 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.1
    PF13191.1 120 lldaalartrrpk...lvlvlDD........lqwadresldlLealle 156
                  + d + ++ +r+    +++v+D         +q a  ++l+lL ++ +
  MMETSP0890-20130614|35563_1 551 EADVRTKKMARKAgslIIFVVDAsgsmalnrMQAAKGAALSLLTEAYQ 598
                  333333333333357688888867788866666666666666655544 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   8.8   2.1e-05     0.026     145     238 ..     370     461 ..     359     464 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.1e-05
    PF05308.6 145 qeqsnlstadllslsdesvslslkssstasvvisdpteepelevppppppPpPlpavslqqsasaielikerke.kksaeektlvsskskskelp 238
                   ++ +l + +++s++d ++ ++l+   + s+v  +p+++p  e+ppppppPpP+++   q++ +    ++e    ++++ee+   ++  ++++lp
  MMETSP0890-20130614|35563_1 370 RANAALNSRSEVSAEDLKLAVKLAILPRSSFV-NNPDQAPDIEAPPPPPPPPPPQMEDQQDEETDN--EQEPPPdQNNQEEEQPEQQPESEPDLP 461
                  34445555556788888888888888999999.677799999999988888888887777777643..333333245555555555555556766 PP

>> PF05887.6  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  12.7   0.00058      0.72      55     107 ..     407     459 ..     361     471 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00058
    PF05887.6  55 tngtdrddepeeeeetepeeegeeetepeeegeeetepeeeeepepepetepe 107
                  +   +  + p +++ ++ e++ +eet+ e+e++++ + +eee+pe +pe+ep+
  MMETSP0890-20130614|35563_1 407 APDIEAPPPPPPPPPPQMEDQQDEETDNEQEPPPDQNNQEEEQPEQQPESEPD 459
                  33444555566666666677777777777777777777777767777766665 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.2    0.0025       3.1     218     276 ..     398     455 ..     370     471 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0025
    PF09770.4 218 qqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpq 276
                  +++ ++p qap   + p+++p+++++++ qq ++  +++ p+p q++q+++q + ++p 
  MMETSP0890-20130614|35563_1 398 SSFVNNPDQAPDIEAPPPPPPPPPPQMEDQQDEETDNEQEPPPDQNNQEEEQ-PEQQPE 455
                  5677788888888888888888899999888888887777777777775553.344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       644  (0.0471036); expected 273.4 (0.02)
Passed bias filter:                      393  (0.0287449); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:02.20
# Mc/sec: 835.46
//
Query:       MMETSP0890-20130614|35578_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       113  (0.00826507); expected 273.4 (0.02)
Passed bias filter:                      108  (0.00789936); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.37s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 125.35
//
Query:       MMETSP0890-20130614|35577_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 258.96
//
Query:       MMETSP0890-20130614|35579_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 288.31
//
Query:       MMETSP0890-20130614|35588_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-08   32.3   0.0    2.4e-07   30.7   0.0    1.7  2  PF13561.1  Enoyl-(Acyl carrier protein) reductase
     0.0019   18.5   3.4      0.017   15.4   0.4    2.4  2  PF02672.10 CP12 domain


Domain annotation for each model (and alignments):
>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.5e-11   2.4e-07     174     242 ..       2      71 ..       1      72 [. 0.95
   2 ?   -1.0   0.0      0.16   1.1e+03      63      77 ..     182     195 ..     129     227 .. 0.55

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 3.5e-11
                  -EEEEEE--------------------------------CCC---HHHHHC.SGGGTT----EEE----- CS
    PF13561.1 174 RvntisaGplktraakaiggiekmieyseenapLgkelsaeevaeaaafLl.sdlasaiTgetlyvDgGl 242
                  Rvn+i+ G +    ++ + +  ++ + +++  pL++  + e++a+a+++Ll s++++ +Tg+ ++ DgG+
  MMETSP0890-20130614|35588_1   2 RVNAIAPGIVPVERTAEMLNSPEAQTLWQSHLPLRSMGTVEQIADACIWLLdSPASQWMTGTAITLDGGM 71 
                  9**********999999999****************88***********9979****************7 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.16
                  HHHHHHH.---BSEE CS
    PF13561.1  63 aekvkedlggkiDil 77 
                  + k+ +dl +++D l
  MMETSP0890-20130614|35588_1 182 CRKLAKDL-EELDAL 195
                  23333333.444433 PP

>> PF02672.10  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   2.5e-06     0.017       6      41 ..     127     162 ..     124     168 .. 0.90
   2 ?    3.5   0.1     0.013        91      16      42 ..     173     198 ..     166     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.5e-06
   PF02672.10   6 qkaikeaeeacaeegansaecaaawdeveeLqaeas 41 
                  ++a++ a++a+++ ga+s+++a aw  v++L+ + +
  MMETSP0890-20130614|35588_1 127 REARAAAHTASTKFGASSSQAANAWALVDDLERKSE 162
                  68999**************************98765 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.013
   PF02672.10  16 caeegansaecaaawdeveeLqaeash 42 
                  c+ + +++  c+++   +eeL+a  + 
  MMETSP0890-20130614|35588_1 173 CDLD-DTTDRCRKLAKDLEELDALIAA 198
                  5556.78999***********997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.83
# Mc/sec: 675.60
//
Query:       MMETSP0890-20130614|35598_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-08   32.9   0.0    1.5e-07   31.4   0.0    1.8  1  PF00169.24 PH domain
  ------ inclusion threshold ------
      0.045   14.2   0.0       0.12   12.8   0.0    1.7  1  PF01922.12 SRP19 protein


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   2.2e-11   1.5e-07       4     103 ..       2     127 ..       1     128 [. 0.89

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2.2e-11
                  EEEEEEEE..............TSSSCEEEEEEEEET..TEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSS...CTTSSSSEEEEEETTT.......CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   4 eGyllkks..............ellktwkkryfvLts..nyLlyfksskkksykapkgsiplndctvkkasstkfa...lqkesnnyfeitfkdv.......esyllsaeseeerkrWvqalknll 103
                  +Gyllkk+                +++w kr+fvL    + L y+k+ + ++yk  +++   ++++v +a    ++   +  e  +yfe++  +        + + + a+s ee+ +W++al+++l
  MMETSP0890-20130614|35598_1   2 SGYLLKKGggrsragegklrskLHRRNWSKRWFVLDVesGELQYYKDASMQQYKGTIRILTTSSIQVPDAVCLRGRhrpSRQEALCYFELHQVTDdegrmrsRPLAVRAPSGEELIEWLRALQKSL 127
                  79******************9999***********9777**********888888888888888888888877653444499*********999999**************************975 PP

>> PF01922.12  SRP19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.12       7      67 ..      88     147 ..      86     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.8e-05
                  CCB.TTS-ST----S-CCC-BSS--HHHHHHHHHH----EEE-TS-TTCCCTTS----EEES CS
   PF01922.12   7 ylD.skltrseGRrvpkelaVenPtleeiaealkklglkvvveeekkyPrekfeeegrvrve 67 
                  y++  ++t  eGR  ++ laV+ P+ ee+ e l++l+ +  ++++  ++ +   ++ rv + 
  MMETSP0890-20130614|35598_1  88 YFElHQVTDDEGRMRSRPLAVRAPSGEELIEWLRALQKSLDLQRQEENTWH--VQQSRVNIG 147
                  5552467999**************************998888877766655..666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.42s 00:00:01.27 Elapsed: 00:00:00.90
# Mc/sec: 1368.59
//
Query:       MMETSP0890-20130614|35600_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-32  111.4   2.2    2.2e-31  108.8   1.5    1.9  1  PF10558.4 Mitochondrial 18 KDa protein (MTP18)


Domain annotation for each model (and alignments):
>> PF10558.4  Mitochondrial 18 KDa protein (MTP18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   1.5   1.6e-35   2.2e-31      20     166 .]     116     249 ..     111     249 .. 0.92

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 1.6e-35
    PF10558.4  20 hRyvaYasdiGEafrpvvppalvkaaYgvswaYilgDvadkgykaalkneevlspeleaekkaeelakekaskaedvalvmvkravfqslASvalPaftIhsvvryskellkka....knkllrkwgpvalGLavvPllikliDepveeav 166
                   Ry++Ya+++GEafrp+vp ++v ++Ygv+++Y+++D++dk+ ka  +++  +s                 + +  + l  ++ +++q  ASvalP++tIh+vv++   +l+ a        + +++p+a GL ++P+++k++De +e+++
  MMETSP0890-20130614|35600_1 116 LRYAGYANEVGEAFRPIVPAWIVPGSYGVAITYVFADTVDKTIKAFGSSKYISS-----------------ALTVCAILEGLDAFLWQITASVALPGYTIHQVVEIVVAVLTAAgfdlDHGGVVATVPTAFGLLTIPFIVKPLDELAEQIM 249
                  5************************************************99999.................466778889*******************************999775444556899**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.64
# Mc/sec: 999.73
//
Query:       MMETSP0890-20130614|35603_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   17.4   0.0     0.0019   17.3   0.0    1.0  1  PF06224.7  Protein of unknown function (DUF1006)
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.017   14.4   0.0    1.4  1  PF04079.11 Putative transcriptional regulators (Ypuh-like)
      0.022   14.4   0.0      0.032   13.9   0.0    1.2  1  PF12840.2  Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PF06224.7  Protein of unknown function (DUF1006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.2e-07    0.0019     107     177 ..      17      89 ..       2     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.2e-07
    PF06224.7 107 aaavlerlaaegpltareleaalarrgw.w.gwkkpskaskralellflegelvvarrergfektydlaervl 177
                   + +l  +a++gp+ta +l ++l+ +++ + g  k+++ +k++l++l+ +  ++  + e+g   ty ++   +
  MMETSP0890-20130614|35603_1  17 RQYILNMIADNGPMTANQLWEKLENAHLpKfGEIKTKSKMKYVLQHLSDRNLIRARPNEKGKSFTYHVIRNFF 89 
                  6678999*******************4455555557789**********************999999988773 PP

>> PF04079.11  Putative transcriptional regulators (Ypuh-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.6e-06     0.017     109     145 ..      54      89 ..      17      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.6e-06
   PF04079.11 109 n.sdsvvktLlergLikekgrkeepgrpilYgtTekFl 145
                  +  ++v+++L +r+Li+ +   +e+g++++Y++ ++F+
  MMETSP0890-20130614|35603_1  54 SkMKYVLQHLSDRNLIRARP--NEKGKSFTYHVIRNFF 89 
                  44899*************99..569********99996 PP

>> PF12840.2  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     7e-06     0.032      14      58 ..      19      73 ..      16      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7e-06
                 HHHHHH..H----HHHHHHHHT..........--HHHHHHHHHHH.H---EEE-- CS
    PF12840.2 14 rilraLareegltaselaerld..........lpqstlsyHLrvLeeaGLiever 58
                  il ++a+++++ta +l e l+           ++s + y L+ L++ +Li+ ++
  MMETSP0890-20130614|35603_1 19 YILNMIADNGPMTANQLWEKLEnahlpkfgeiKTKSKMKYVLQHLSDRNLIRARP 73
                 5999*****************7788888999899999**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.34s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 442.96
//
Query:       MMETSP0890-20130614|35602_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.1e-115  382.9   0.0   9.5e-115  382.7   0.0    1.0  1  PF00316.15 Fructose-1-6-bisphosphatase


Domain annotation for each model (and alignments):
>> PF00316.15  Fructose-1-6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.7   0.0    7e-119  9.5e-115      15     322 ..      20     332 ..       7     335 .] 0.92

  Alignments for each domain:
  == domain 1    score: 382.7 bits;  conditional E-value: 7e-119
   PF00316.15  15 aatgelkevlsslaeaaktiaskirkaglaellglagatnvtGdeqkklDvladdilieaLkaseavkvlaSEEeeelvvlegekegkyavaiDPlDGSSnidtnvsvGTifsifrras.edeasti.dvlrpGreqvAagyviYGpstalvltlgkG.vneftlDldlgefilvkeevkipee.gkifsinegnarkwdkavrkyidklkeekegsrkkyslRyigslVadvhrillkgGiflypgdkkyekgkLRllyEaaPlaflieqagGkatdg....k.kriLdlvpkklhqrtpivlGskdeverveeli 322
                  +   e++ +++++++a+k i++++rkag+a+l+glag+ n++Gd  kklDvl++di+i+aL++s+++++l+SEEee+++++ ++k+gky++a+DPlDGSSnid+nvs GTifs+++r+s ++++ t+ d+lrpG+e+vAagy++YG++t +v+t+g+G v+ ftlD + gef++  e +k+pe+ ++i+s negn   wd++++k  +  k+   ++ k+ys+Ry+gs+V+dvhr++l+gG+f yp+dkk +kgkLR+lyE +P+a++ eqagG a +g    k  ri+d++p+++h+r pi++G+k +v++v +++
  MMETSP0890-20130614|35602_1  20 TKDMEMTILMNAMQLACKLISRAVRKAGVANLYGLAGQANTSGDDVKKLDVLSNDIMINALSNSGMCALLVSEEEEDPIIVPADKRGKYCLAFDPLDGSSNIDCNVSTGTIFSVYERKSaSSTEPTVdDILRPGTEMVAAGYCMYGSATDFVVTFGNGhVHRFTLDDSVGEFVHFGE-MKFPEKnKTIYSCNEGNFSLWDEPIQKATEMFKS--ASP-KPYSARYVGSMVSDVHRTILYGGVFYYPADKKATKGKLRVLYEGFPMALITEQAGGIANTGlfngKiGRIMDVIPDNIHDRCPIIMGCKRDVDKVLSFY 332
                  34567999************************************************************************************************************998655566667*****************************879**************986.6777651679*****************9999988..444.99********************************************************876332256799************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.74
# Mc/sec: 1084.84
//
Query:       MMETSP0890-20130614|35605_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-30  105.5   0.0      2e-30  105.3   0.0    1.1  1  PF04417.7 Protein of unknown function (DUF501)
  ------ inclusion threshold ------
      0.057   12.7   0.1      0.082   12.2   0.0    1.2  1  PF07455.6 Phage polarity suppression protein (Psu)


Domain annotation for each model (and alignments):
>> PF04417.7  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.0   2.9e-34     2e-30       1     138 [.       4     139 ..       4     140 .. 0.92

  Alignments for each domain:
  == domain 1    score: 105.3 bits;  conditional E-value: 2.9e-34
    PF04417.7   1 vaarcasgnPtVvktaplledg...kpfptlfwLtcpelkkavsrlEaegvikeleekldedeelaeayeaaherylakReellseeerellerkgavealkkvgvGGiadadkvkCLHalvAhaLag..egknpvGelvlel 138
                  vaa++++g P+ ++++pl++dg    pfptl+wLt+++l + +s +E++g+++e++e +++  +    + aa+ery ++R+ell+e++ +ll+ +g     +  g++Gi++ +kvkCLHa+ Ah+L++  + +np+G++++++
  MMETSP0890-20130614|35605_1   4 VAAWTSDGWPAAIEASPLRHDGktaIPFPTLYWLTDQRLSASISGIERNGGVQEASEFVRDKLS---ILLAAQERYQRRRNELLTEDDAALLRLRG----WELQGIAGIRNVEKVKCLHAHFAHFLCDqtKPVNPIGAWTYNR 139
                  8999******************7777*********************************99865...899******************99888766....5567***********************976678******9987 PP

>> PF07455.6  Phage polarity suppression protein (Psu)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05     0.082     113     153 ..      48      86 ..      40      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
    PF07455.6 113 aivkrsaldravdiLreaLvvwLaaGekinysaqdkdiLte 153
                   i +++++++a++++r+ L+  Laa e  +y+ + +++Lte
  MMETSP0890-20130614|35605_1  48 GIERNGGVQEASEFVRDKLSILLAAQE--RYQRRRNELLTE 86 
                  57799**********************..899889999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.81
# Mc/sec: 437.85
//
Query:       MMETSP0890-20130614|35601_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-20   71.5   0.0    1.2e-19   69.8   0.0    2.0  1  PF00271.26 Helicase conserved C-terminal domain
    2.8e-17   62.5   0.0    2.1e-16   59.7   0.0    2.4  3  PF00270.24 DEAD/DEAH box helicase
      2e-09   36.9   2.3    5.6e-09   35.5   1.6    1.8  1  PF08147.7  DBP10CT (NUC160) domain
  ------ inclusion threshold ------
      0.023   14.7   0.0       0.14   12.1   0.0    2.4  2  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   3.5e-23   1.2e-19       6      78 .]     185     257 ..     181     257 .. 0.97

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 3.5e-23
                  ----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  +++++++++g l q  r++ le+f++g+++ l+ t+va+rGid+p v+ Vi++++p  ++ +++r+GR++R g
  MMETSP0890-20130614|35601_1 185 PEYRAICIYGALDQMIRNQALESFRKGRTPLLFVTDVAARGIDIPLVDKVIHYSFPPAPRLFVHRAGRAARQG 257
                  679********************************************************************76 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   6.1e-20   2.1e-16      79     169 ..       9     100 ..       3     104 .. 0.89
   2 ?   -1.6   0.0      0.41   1.4e+03      33      88 ..     147     198 ..     142     220 .. 0.64
   3 ?   -2.2   0.0      0.63   2.2e+03     129     138 ..     529     538 ..     480     554 .. 0.67

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 6.1e-20
                  EEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHH...CCH.HTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTTSEEEEEESS-THH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24  79 vlliiggvalardqlsvldngvdivvgTpgrlddlvst...gkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 169
                   ++i+gg +l+  q + l ++++ +v Tpgrl++l+++       nl qvr++++DEadrl ++gf ++++++l ++  +  +q++++SAT+p+ 
  MMETSP0890-20130614|35601_1   9 SAAIVGGESLE-LQFEALTKKPRTLVCTPGRLVHLLKElpaA-VlNLDQVRIIIFDEADRLFEMGFAEEIRSLLAKMTWPG-RQTMLFSATMPSV 100
                  5789999*999.999999899*****************9954.55*******************************97775.9*********965 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.41
                  HHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24  33 ipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggval 88 
                   ++l+++ ++  kt++  +++ + tr  +e  l  + k++  p+ r+ +i+g  ++
  MMETSP0890-20130614|35601_1 147 FALLRKFCSS--KTQQPLTIVFVATRHHCEYLLACAAKLM--PEYRAICIYGALDQ 198
                  4555555553..5677788888888888888888888888..44788888887663 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.63
                  ECTHHHHHCT CS
                  xxxxxxxxxx RF
   PF00270.24 129 lDEadrllsq 138
                  lDEa+  ls 
  MMETSP0890-20130614|35601_1 529 LDEAHAALST 538
                  7999998885 PP

>> PF08147.7  DBP10CT (NUC160) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.6   1.6e-12   5.6e-09       2      64 .]     558     627 ..     557     627 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.6e-12
    PF08147.7   2 LvnDekakeskqkklmrWDkkkkkyVsran...gskgdkkkIrgEsGqkiaA....sfksgrydeWkkkk 64 
                  L+ De+ ++ k++ + +WD +k+ky++++       ++  k r+EsG+ +++    +   +ry++W+++k
  MMETSP0890-20130614|35601_1 558 LAPDEALDMAKKQRIFQWDSRKRKYIQQTLgdvADGDKPGKTRTESGAVVSSaraaKSVGDRYQKWQQNK 627
                  78899999*******************98887644555679*********75221155568*****7765 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     4e-05      0.14      73     113 ..      40      82 ..      13     104 .. 0.71
   2 ?   -2.0   0.0      0.95   3.3e+03      58      65 ..     149     156 ..     112     218 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4e-05
    PF13401.1  73 eell.ealqealrrrrtrlliiDEaqrL.seealeelrslldd 113
                   +ll e  + +l+  ++r++i DEa+rL  +   ee+rsll +
  MMETSP0890-20130614|35601_1  40 VHLLkELPAAVLNLDQVRIIIFDEADRLfEMGFAEEIRSLLAK 82 
                  45553333445555566**********769*********9875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.95
    PF13401.1  58 llsalglp 65 
                  ll++++++
  MMETSP0890-20130614|35601_1 149 LLRKFCSS 156
                  22222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.40s 00:00:01.42 Elapsed: 00:00:00.90
# Mc/sec: 1893.12
//
Query:       MMETSP0890-20130614|35604_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-39  135.7   0.7    1.1e-39  135.7   0.5    2.1  2  PF14308.1  X-domain of DnaJ-containing
    1.1e-24   85.8   0.3    2.7e-24   84.5   0.2    1.7  1  PF00226.26 DnaJ domain


Domain annotation for each model (and alignments):
>> PF14308.1  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.2       1.1   7.8e+03     111     118 ..      25      32 ..       9      44 .. 0.42
   2 !  135.7   0.5   1.6e-43   1.1e-39       3     191 ..     318     562 ..     317     571 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 1.1
    PF14308.1 111 eeeeegee 118
                  ++++++++
  MMETSP0890-20130614|35604_1  25 MMSTQENK 32 
                  22222222 PP

  == domain 2    score: 135.7 bits;  conditional E-value: 1.6e-43
    PF14308.1   3 qkkreeeLaekLrdrlseyv..........dgnkde.............................FkeklekeieeLkeesFglellhtIGkvYenkAnaflgksktflglsgifasvkekgksvkstfsalssaldaqksmeemekeeeee...................geeteee.......laemeekvtgkilaaawaiskfdiestlrkvCdkvLkDksvdkktRikRAeaLkilGkifqkvkrskee 191
                  q +re+++a +L + l +yv          d    +                             F+++le+++++L + +Fg  ll  IG+vY+  ++++lg +k   gl+g f s+k+k + +  +f a++ +l+++   +++ ++e+++                   +e    +        ++++++++  +l+++w+i+++d+estlr +C+k+L+D+svd++tR++RA++L ilG++f++ k++  e
  MMETSP0890-20130614|35604_1 318 QLQREVRCAVNLANILASYVeetapkpnetD----AqrkqrlfgtasfdyaqnelyveqqsaqlrFRAELEAQADDLASTAFGATLLGVIGYVYQVAGTKHLGRHKPL-GLEGHFISMKQKAHIFGTKFDAARDVLKVAVKSSAAHSAEKRAatyitkpssenqnisstetNE----DarkakafAEQKQQDMMLSFLEVMWRITVVDVESTLRGACHKLLYDHSVDLDTRLRRAKGLIILGEVFSSRKNTHAE 562
                  789*****************65555544331....134456777777777777888888899999***************************************9999.****************************998888877777777789999999988887654322....2344455566666777778***************************************************9999765 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.2   3.9e-28   2.7e-24       1      64 []     200     262 ..     200     262 .. 0.99

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 3.9e-28
                  HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                  ++Y+ Lgv+++a+++eIkkaY+k a+k HPDkn++d  +a+ +f++i eAy+vLs+p+ ra+yd
  MMETSP0890-20130614|35604_1 200 EFYDALGVEPSATEAEIKKAYYKCAIKNHPDKNPGDI-NAAARFQKIGEAYQVLSNPTLRAKYD 262
                  69***********************************.9************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       961  (0.0702896); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.43s 00:00:01.47 Elapsed: 00:00:00.97
# Mc/sec: 1521.81
//
Query:       MMETSP0890-20130614|35613_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.44s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 217.85
//
Query:       MMETSP0890-20130614|35615_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-102  343.8  35.6     2e-102  343.5  24.7    1.0  1  PF03169.10 OPT oligopeptide transporter protein
  ------ inclusion threshold ------
       0.24   10.7   5.8        3.2    7.0   0.1    3.5  3  PF13795.1  HupE / UreJ protein


Domain annotation for each model (and alignments):
>> PF03169.10  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.5  24.7  2.9e-106    2e-102      60     621 ..      15     538 ..       3     541 .. 0.90

  Alignments for each domain:
  == domain 1    score: 343.5 bits;  conditional E-value: 2.9e-106
   PF03169.10  60 pgpftikEnvlvqtmasaaatlalatgfvavlpallfygqsf..sfgylillslsvqllGvgfagplRkflvypekllfPsglataellkalhkpegkkeaksrlkflliafvvsfvytwfpaylFpalssfsilcwiapsnvvgallaggltftfdwsaillgsglivplwvavnmliGavlswgiliPllyysgnvwyaaylpinsnslfdntgaedglldearyigyglmllaalvalsyllqfaaitativksilshgrdikaalssskssreevekse..ddphsrlmrkykevpmwwylallvlslvlgvilvealfgqtqlpvwglllalllaallaipsaiiaGltglnpvsglgkltqliagallpgrpvanllfgavgyaaaaqagdfmqDLKtGhllkapPraqfvaqliGtlvgavvniavlnllnqaygltgaqgdswtlpapqaflsaavawgvvggkr.glpykalelgflvgavapvldwll.....kkrlPsslavagagsigiylppsltvalliGglinylvkkrrkawwekynyvlAaGLiaGealvsviia 621
                      ++kE vl+qt +++aat++la+gfv+++pal+++g+s   s+  ++ +++  +++Gv+ a+plR+ ++++e+l fPsg+ata+l+ +lh+++    ++  + +ll +f ++f++ + +a+ Fp+++++ +          +++ ++ ++++fd+s++++g+g i+++   ++ml+Ga+l++ i+ Pl y+ ++++++ +              ++g+ ++  + ++++ l++++v+l        i+++++ks+++ g+  k   s +++s  +  +s+       +++ ++++++m+  l +l+ls++l+ ++   +     +p+  +++a+++a+++a+ + +++G+t+lnpvsg+gkl+ql++++l pgr+++nl++gav++a a qagd++qDLKtG ll+++P+aqf aql+G+++++++ +a ++l++ +++++     s+++pap+a ++   a + ++g   +  +++ ++++l++++ ++ +++      ++ lPs++a+a    ig ylpp ++++++i++l+++ ++k +++  ++y++vlA+GL++Ge+l+sv  a
  MMETSP0890-20130614|35615_1  15 GSTSNPKEIVLAQTLSVSAATMPLAGGFVGIVPALSMMGSSAlvSWRSQLWWCFGLAFFGVFAAVPLRQRFLIKERLAFPSGTATAKLVCVLHGGN--FGTRGEWSVLLQSFCGAFSFGL-IAFFFPFITQIPF----------LGQKLAYYGWSFDPSPAYAGQGAIMGPVSGSSMLFGAILGYAIIGPLVYHLQWAPGSINDG------------TNGATAYLLWLALAILLADSIVSL------SFILMSMLKSLFFLGKPTK---STESESLLALAQSKnsASYLVQDVNHDEQISMRLWLPGLLLSCALCAVTLSSFL----TPW-QSMIAVCIALIVALLALRALGETDLNPVSGVGKLSQLVFAILAPGRVLTNLAAGAVAEACATQAGDMLQDLKTGLLLGVSPKAQFHAQLLGSCASIFFTVALYRLYSSVFVIP-----SPDIPAPSALIWLDFANLCANGGAaSDLKYLFPASSLAFIFGAFFSIAKhmfptSSILPSPVALA----IGLYLPPRFSLPRIIAALAAHAWSKLAPESHAAYMVVLASGLVLGEGLASVCTA 538
                  56789*********************************999999****************************************************..5568******************.778****999999..........68888999*******************************************8888777766............************************......5566666666666666655...22222222222222114456789999999*********************9999....455.77***************************************************************************************************************.....*******************999778888899999999999888888776666777777777****....**************************************************9876 PP

>> PF13795.1  HupE / UreJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1    0.0096        66     100     139 ..      67     106 ..       8     108 .. 0.87
   2 ?    1.5   0.1     0.024   1.6e+02      47      80 ..     292     326 ..     288     351 .. 0.72
   3 ?    7.0   0.1   0.00047       3.2      72     110 ..     499     537 ..     493     546 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0096
    PF13795.1 100 ihGlgfasvlkelglseealvlaLlaFnlGvelgqllvvl 139
                  + Gl+f +v++ + l+++ l+ + laF  G  +++l+ vl
  MMETSP0890-20130614|35615_1  67 CFGLAFFGVFAAVPLRQRFLIKERLAFPSGTATAKLVCVL 106
                  4689**************************9999999886 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.024
    PF13795.1  47 itLalavlgvvsvp.aelvealialsivvvAlenl 80 
                   +L + +l+ + +p ++++ + ial ++++Al +l
  MMETSP0890-20130614|35615_1 292 CALCAVTLSSFLTPwQSMIAVCIALIVALLALRAL 326
                  5666666665554437899999******9999998 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.00047
    PF13795.1  72 ivvvAlenlkrskkkarrrllvallfGlihGlgfasvlk 110
                  i+ +A++++++   +++  ++v+l+ Gl+ G g+asv +
  MMETSP0890-20130614|35615_1 499 IAALAAHAWSKLAPESHAAYMVVLASGLVLGEGLASVCT 537
                  666777777677778899******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       465  (0.0340111); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.52s 00:00:01.27 Elapsed: 00:00:00.80
# Mc/sec: 1647.50
//
Query:       MMETSP0890-20130614|35620_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   13.3   7.8      0.043   12.9   5.4    1.2  1  PF04641.7  Replication termination factor 2


Domain annotation for each model (and alignments):
>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.4   3.1e-06     0.043     155     245 ..      29     124 ..       4     147 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-06
    PF04641.7 155 vCnkefkeedv.vplnptke.elellk.arl..eeekakkkkkkkkkkkkkaeakgekaeaeaksksskeesskagkkkekkklkkkkslaeknek 245
                     ++f+ee+v +p+np+   e+e+ + + +   ++ka+ +kk ++ k+ ++++k++ ++a++ + ssk++++k++ ++++++l+++ sla+k+ k
  MMETSP0890-20130614|35620_1  29 LIAEAFEEEEVvIPINPRAVrEKEECEeQDMvaAARKAATTKKGSHGKHHAHHHKAHRHHASKGPISSKNKQEKSTIVEQEEALETEVSLASKKSK 124
                  56789998877599***8644444443033411444444555555555555555555555555555555666666677777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       872  (0.06378); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.75
# Mc/sec: 929.79
//
Query:       MMETSP0890-20130614|35626_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-21   74.8   0.1      2e-20   73.5   0.1    1.7  1  PF02338.14 OTU-like cysteine protease
      1e-05   24.9   1.8      0.027   14.0   0.1    2.7  2  PF11717.3  RNA binding activity-knot of a chromodomain
    0.00064   19.4   0.0     0.0092   15.7   0.0    2.4  2  PF02820.13 mbt repeat
  ------ inclusion threshold ------
      0.019   14.3  15.4       0.16   11.5   0.7    5.2  4  PF02809.15 Ubiquitin interaction motif
      0.028   14.0   0.0       0.07   12.7   0.0    1.6  1  PF08992.6  Quinohemoprotein amine dehydrogenase, gamma subunit
      0.032   13.4   0.0       0.13   11.5   0.0    2.0  2  PF10275.4  Peptidase C65 Otubain
        7.9    6.4   6.6          2    8.3   0.3    2.5  2  PF04839.8  Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)


Domain annotation for each model (and alignments):
>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.1     1e-23     2e-20       2     126 .]     241     353 ..     240     353 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 1e-23
                  ----HHHHHHHHHH-----HHHHHHHHHHSS--HHHH-------------............-HHHHHHHHHHHHHHTS-EEE-----------------B--TTS-GGGS--S-EEE--BTTB- CS
   PF02338.14   2 gDGnCLfhavsqqlwldhdgrkekheelrealveylrehrelfeefleeeeeeYlkeiskdgewgeeieifalahilrrpiivlkssggealvyikfggkylplekppsiclsspgvlgydgaHy 126
                  gDGnCLf+++s+q++    g+ ++he +r a+ ey+r + + fe f+  ++++Yl+e ++ g+wg+e ei+al++++ rp  v  s++ e  +++   + +  ++ + + +ls++g     g+Hy
  MMETSP0890-20130614|35626_1 241 GDGNCLFRSISHQIY----GNDSHHELVRGACIEYMRLEYAYFESFVACDFDSYLEEKARLGVWGDEPEIQALCELYDRPAQV-WSYDAEKECATIL-R-DYGDSLTMPMRLSYYG-----GGHY 353
                  9**************....8899************************************************************.6666666666443.2.3458899999999999.....9999 PP

>> PF11717.3  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2   0.00039      0.76      16      49 ..      42      73 ..      28      80 .. 0.82
   2 !   14.0   0.1   1.4e-05     0.027      12      51 ..     105     141 ..      89     146 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00039
                 EEEEEEEEEEE----EEEEEE-----SS--EEE- CS
    PF11717.3 16 lrkAeilsirtkkgkyeYYVHYeefNkRlDeWVt 49
                 + +A i+ + +k++++   V Y+ f  R+DeW +
  MMETSP0890-20130614|35626_1 42 WSEANIIAVDEKEQRV--LVTYTYFSDRWDEWLP 73
                 7888888888888555..8*************87 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.4e-05
                  TTTEEEEEEEEEEEE----EEEEEE-----SS--EEE-TT CS
    PF11717.3  12 eegelrkAeilsirtkkgkyeYYVHYeefNkRlDeWVtae 51 
                  e+  + +A++l + ++kg     VHY+++    DeW++ +
  MMETSP0890-20130614|35626_1 105 EQRNWLEAQVLGTCEEKGI---LVHYQNYHSKFDEWIPLH 141
                  4677888888888887754...7**************975 PP

>> PF02820.13  mbt repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.22   4.4e+02      23      49 ..      53      79 ..      33      87 .. 0.83
   2 !   15.7   0.0   4.7e-06    0.0092      15      56 ..     110     152 ..      99     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.22
                 ---EEEEEE----CCG-EEEETT-TTE CS
   PF02820.13 23 lgerlrlrldgydsendfwvdvdSpdI 49
                  ++r+++++  ++++ d w+ ++S+ I
  MMETSP0890-20130614|35626_1 53 KEQRVLVTYTYFSDRWDEWLPFTSERI 79
                 4678999999999999********988 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 4.7e-06
                  EEEEEEEE---E.EEEEE----CCG-EEEETT-TTEE----TT CS
   PF02820.13  15 cvATVvevlger.lrlrldgydsendfwvdvdSpdIfPvGwce 56 
                    A V  +++e+ +++++  y+s++d w+   S+ I P G ++
  MMETSP0890-20130614|35626_1 110 LEAQVLGTCEEKgILVHYQNYHSKFDEWIPLHSKRIRPFGRMR 152
                  5588999999999*************************99765 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0066        13       2      15 ..     402     415 ..     401     416 .. 0.89
   2 ?    1.2   0.1      0.16   3.2e+02       9      15 ..     461     467 ..     454     470 .. 0.85
   3 ?    2.7   0.1     0.053     1e+02       2      14 ..     489     501 ..     488     504 .. 0.87
   4 ?   11.5   0.7   8.2e-05      0.16       4      18 .]     514     528 ..     514     528 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0066
                  CCHHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalSl 15 
                  ++++ Lq+AL+ S+
  MMETSP0890-20130614|35626_1 402 TDNARLQAALEASR 415
                  68999*******96 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.16
                  HHHHHHH CS
   PF02809.15   9 lALalSl 15 
                  +AL+lS+
  MMETSP0890-20130614|35626_1 461 AALRLSM 467
                  6*****9 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.053
                  CCHHHHHHHHHHH CS
   PF02809.15   2 sEEedLqlALalS 14 
                  sE++ L++A++ S
  MMETSP0890-20130614|35626_1 489 SEDAHLAAAIQSS 501
                  8*********955 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 8.2e-05
                  HHHHHHHHHHHHHHH CS
   PF02809.15   4 EedLqlALalSleea 18 
                  +++L++A+a S+e++
  MMETSP0890-20130614|35626_1 514 DPELAAAIAASMEDQ 528
                  89***********97 PP

>> PF08992.6  Quinohemoprotein amine dehydrogenase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05      0.07      31      60 ..      17      46 ..      13      60 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
                 HCH---TTTTSSTTTS--TTTT-TTTT--- CS
    PF08992.6 31 adlygcsdpcwwpaqvpdtlstykdwskda 60
                 + l     pc+wp q  d+l+t k ws+  
  MMETSP0890-20130614|35626_1 17 SKLGHDPAPCFWPGQEVDVLDTVKIWSEAN 46
                 555555679*****************9864 PP

>> PF10275.4  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.4e-05      0.13      34      60 ..     227     253 ..     166     257 .. 0.76
   2 ?   -1.8   0.0      0.73   1.4e+03     184     212 ..     301     327 ..     264     357 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.4e-05
    PF10275.4  34 kelkekysgirrvrgDGnCfYrafafs 60 
                  + l+++   + +++gDGnC++r++  +
  MMETSP0890-20130614|35626_1 227 NSLAKRSLILLKIQGDGNCLFRSISHQ 253
                  5666666677899**********9765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.73
    PF10275.4 184 adnvqikaLaealgipvrveyldrsvege 212
                   d+ +i+aL+e  + p +v+  d +  +e
  MMETSP0890-20130614|35626_1 301 GDEPEIQALCELYDRPAQVWSYDAE--KE 327
                  6788889999988888888888833..33 PP

>> PF04839.8  Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.8      0.38   7.5e+02       6      47 ..      27      70 ..      26      71 .. 0.81
   2 ?    8.3   0.3     0.001         2      15      38 ..     170     193 ..     169     196 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.38
    PF04839.8  6 FWPrk..DAWeelkkeLeskswIsekervelLnqaTevInyWqe 47
                 FWP +  D  +++k   e + +  ++++ ++L + T   + W+e
  MMETSP0890-20130614|35626_1 27 FWPGQevDVLDTVKIWSEANIIAVDEKEQRVLVTYTYFSDRWDE 70
                 99975558889999999988888888888999999999999987 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.001
    PF04839.8  15 elkkeLeskswIsekervelLnqa 38 
                  ++++ L++k+ +s++++v lLn a
  MMETSP0890-20130614|35626_1 170 KINNILDKKDTVSQTNKVVLLNSA 193
                  57899*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       831  (0.0607812); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.43s 00:00:01.29 Elapsed: 00:00:00.84
# Mc/sec: 1509.13
//
Query:       MMETSP0890-20130614|35631_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-39  134.6  14.7    8.2e-36  123.6  10.2    3.0  1  PF05786.9 Condensin complex subunit 2


Domain annotation for each model (and alignments):
>> PF05786.9  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6  10.2     6e-40   8.2e-36     112     724 ..       2     559 ..       1     560 [. 0.66

  Alignments for each domain:
  == domain 1    score: 123.6 bits;  conditional E-value: 6e-40
    PF05786.9 112 lkegegtNFqkAscTLdasvKiYasRVDSvhtetgkllsGLadsrdkeaeeegregeddeddeeegseleedaakkkakkKaqrksesTleknfealnlkkldlelavDPlFkkasAdfDeggakgLllntLsidsegrl.....vFdssedpeee..lseseddeledeeeidlssLkefkdlevlekqeicPslagfdladpsksaedkflkatedtenedlsddnaddlddddkktdvaFDlnaeaeddaeadvvdegdggdaeefeaakepvlkvervdrqkteiqdgleevdlalsLseenilsYfdnalkknWaGPeHWkfrrtkrveerakaktksaaekqkKkake.efeidfeaeleeevaelifekakanstlsksk..lqkktkkrkl.LP.tDfhfesdnLlklflkpkarlgkleqkkrasteseedideafyanekfadddsaavpnlqgadsdddddepfadareml.sdpsdgedgasaseaggadiltaleneliaaPrkvrkievaYarvAKkvDvkkLKqelWsllqerlesevkeesvqkeeeeeseeeeeksFtqilkslkkvlpaemaqdiStslaFiclLHLANEkgLsLqnqdd........LeDllisk 724
                  +++++ +NFq+AscTL+a+vKiY  RVD     t ++l  La    +++++++    d+  ++ ++++le+++++k++k K  +++++T++ ++ ++n        a+D +  k  A  D  +ak + l  Ls +    +      Fd se+ +e     + +   l+++   +ls L+ + + ++l + +i+P  a  + +d +++  +  ++ t +  ++  +dd++  l++ + +++++    ++            +  +++ e  + +   +      ++++ i d+  + + a+    ++ l Yf++      +G eHW  r      + + +  k+++ ++kK  ++     + + +  ++v++l+  ++ a s+l+ +k   + +  kr l LP +   f s+ L++lfl+p+  ++ +++++ +st++++ i +  y+n k   + + + p    +   +d+     d++++   +p +             d  +  e ++ a  r+v+ ++v++ ++AK+vDv+kLK++lW  + +++                    e + F+  +++++++     ++ + +++ F clLHL N+++L+L +  +        L D+li++
  MMETSP0890-20130614|35631_1   2 EDDDHLVNFQRASCTLEAGVKIYCGRVDETFESTHRVLESLA----RRQPNQE----DAH-ESIDDGSLENNDKNKTTKNK-LKHHIATIADDVTKIN------RTAIDDVIFKPLALADATAAKDMVLQRLSCQRPAAVlleyyGFDHSENRHEGsnAWRVDLPALPAALCPELSALR-VEVAAALGDTSITPTPAPPQ-EDFPAETLHLTANLTANVSDN--KDDSSSPLLNTECDEEISVSRAQDN-------SLSSVAVEENMETPEVDFDDDPPPPIFAEDDGISDDPLQDAFAPA---DDGLDYFAPV---EYVGFEHWLPRPAE---PVKST-IKPNQVEAKKTISKkVPSKEHATK--SSVHALFDGPPPAPSALTGAKnlRKRPDAKRSLtLPlAGPTFTSRDLTSLFLAPGWCVKPVDFNHANSTDESTRIAKNRYDNFKDIFEAHVEPPLEPHF---EDSPFDCVDFDDDDmGPPTN-----------LDD--SSFEPTFLACDRRVEVEQVPFTKTAKRVDVRKLKSNLWARIANQT--------------------EPLPFSTAVSDVAESAHY-DTNHVTMPFFFTCLLHLCNDHNLALSEISSsnnnnlppLADFLIHN 559
                  578999***********************************8....4555543....222.33334466666666666777.89*******9999999......5666666668889***************88888888688887998888875422223333444445555666666.77777777777777777766.333333332222222222222..2333344444444333333332222.......234444445444444444444445555555555555222222222...3568889874...679********443...33333.333333344443330333333333..3466666667777777775551144555667778**55689*****************************************99222333333333333...33333344444422122222...........222..3567899999*****************************777666....................447799999999887665.567899*******************998888899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:01.20
# Mc/sec: 1128.28
//
Query:       MMETSP0890-20130614|35636_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-10   40.5   6.1    3.8e-08   33.2   0.3    2.4  2  PF13499.1  EF-hand domain pair
    2.4e-08   32.6   6.9      0.067   12.4   0.1    3.5  3  PF00036.27 EF hand
    1.6e-07   30.5   5.6    0.00044   19.8   0.2    4.0  4  PF13405.1  EF-hand domain
    2.4e-07   30.1   3.9    5.3e-05   22.6   0.1    3.4  4  PF13833.1  EF-hand domain pair
    2.9e-05   23.6   7.3    0.00097   18.7   0.7    3.0  2  PF12763.2  Cytoskeletal-regulatory complex EF hand
     0.0014   17.7   2.6      0.045   12.9   0.1    3.2  3  PF13202.1  EF hand
     0.0017   18.2   2.5     0.0032   17.3   0.0    2.2  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.3   1.9e-11   3.8e-08       2      63 ..      13      70 ..      10      71 .. 0.94
   2 !    9.9   0.3   0.00036      0.71      43      64 ..     136     157 ..      99     159 .. 0.70

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.9e-11
    PF13499.1  2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63
                 + ++Fk+lD d +g ld  eL +l++ l  + ++ee++ +     ke D +gd  +sf Ef 
  MMETSP0890-20130614|35636_1 13 ILKVFKMLDHDDSGALDTSELDQLIDLLKIPVKPEELKSI----QKESDVDGDSNISFKEFF 70
                 6678*************************99999999999....*****************5 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00036
    PF13499.1  43 dyifkelDkngdGvlsfeEflq 64 
                  ++ +ke+D + +  ++f+Ef++
  MMETSP0890-20130614|35636_1 136 EDRWKEMDWDENQSIDFSEFVY 157
                  44599***************86 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   3.4e-05     0.067       2      25 ..      13      36 ..      12      40 .. 0.88
   2 !   11.7   0.1   5.7e-05      0.11       7      23 ..      54      70 ..      48      74 .. 0.87
   3 !   11.3   0.1   7.8e-05      0.15       6      24 ..     139     157 ..     136     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHCTTTSSEBEHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkea 25
                 + ++Fk++D D +G ++ +E+ ++
  MMETSP0890-20130614|35636_1 13 ILKVFKMLDHDDSGALDTSELDQL 36
                 6799****************9766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.7e-05
                 HHHCTTTSSEBEHHHHH CS
   PF00036.27  7 kefDkDgdGkIsfeEfk 23
                 ke D+Dgd  Isf+Ef 
  MMETSP0890-20130614|35636_1 54 KESDVDGDSNISFKEFF 70
                 678*************5 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 7.8e-05
                  HHHHCTTTSSEBEHHHHHH CS
   PF00036.27   6 FkefDkDgdGkIsfeEfke 24 
                  +ke+D D +  I+f+Ef+ 
  MMETSP0890-20130614|35636_1 139 WKEMDWDENQSIDFSEFVY 157
                  89***************86 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   2.2e-07   0.00044       2      26 ..      13      37 ..      12      41 .. 0.89
   2 ?    4.8   0.0     0.014        28      10      23 ..      57      70 ..      54      76 .. 0.87
   3 ?   -0.9   0.0         1     2e+03       3      22 ..     101     120 ..      99     126 .. 0.76
   4 !    5.7   0.2    0.0072        14       6      24 ..     139     157 ..     134     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.2e-07
                 HH---GCC-------B---HHHHHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELrdaL 26
                 + ++Fk++D+d +G +d +EL +++
  MMETSP0890-20130614|35636_1 13 ILKVFKMLDHDDSGALDTSELDQLI 37
                 789******************8876 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.014
                 -------B---HHH CS
    PF13405.1 10 DkdgdGkidaeELr 23
                 D dgd  i+++E+ 
  MMETSP0890-20130614|35636_1 57 DVDGDSNISFKEFF 70
                 99**********95 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 1
                  H---GCC-------B---HH CS
    PF13405.1   3 reaFklfDkdgdGkidaeEL 22 
                   +a+ +fD    G+i + ++
  MMETSP0890-20130614|35636_1 101 ISAYLIFDPECFGYIKKTQV 120
                  57888999998899877665 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0072
                  -GCC-------B---HHHH CS
    PF13405.1   6 FklfDkdgdGkidaeELrd 24 
                  +k +D d +  id++E++ 
  MMETSP0890-20130614|35636_1 139 WKEMDWDENQSIDFSEFVY 157
                  7899*************75 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.013        25      30      46 ..      16      32 ..      15      33 .. 0.87
   2 !   22.6   0.1   2.7e-08   5.3e-05       2      51 ..      25      73 ..      24      75 .. 0.93
   3 ?   -3.4   0.0       3.6   7.1e+03      34      43 ..     107     116 ..     106     117 .. 0.82
   4 !    5.7   0.1    0.0051       9.9      32      48 ..     140     156 ..     140     161 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.013
    PF13833.1 30 lfrefDtdgdGkisfeE 46
                 +f+++D d++G+++  E
  MMETSP0890-20130614|35636_1 16 VFKMLDHDDSGALDTSE 32
                 59***********9665 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2.7e-08
    PF13833.1  2 kGlItreeLkralallglkglseeevdilfrefDtdgdGkisfeEFcvll 51
                 +G ++  eL   ++ll+++ +++ee+  + +e D dgd  isf+EF v l
  MMETSP0890-20130614|35636_1 25 SGALDTSELDQLIDLLKIP-VKPEELKSIQKESDVDGDSNISFKEFFVTL 73
                 6889999999988******.**************************9976 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 3.6
    PF13833.1  34 fDtdgdGkis 43 
                  fD ++ G+i+
  MMETSP0890-20130614|35636_1 107 FDPECFGYIK 116
                  8999999997 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0051
    PF13833.1  32 refDtdgdGkisfeEFc 48 
                  +e+D d +  i+f EF+
  MMETSP0890-20130614|35636_1 140 KEMDWDENQSIDFSEFV 156
                  689*************8 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.7   4.9e-07   0.00097      38      78 ..      42      82 ..       9     105 .. 0.70
   2 !    6.7   0.5    0.0027       5.3      47      68 ..     137     158 ..     113     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.9e-07
    PF12763.2 38 skleedklekiwdladidedgkldfeefciamrlifdlvng 78
                   ++ ++l++i + +d+d d ++ f+ef +++ l++ + ++
  MMETSP0890-20130614|35636_1 42 IPVKPEELKSIQKESDVDGDSNISFKEFFVTLILVYLVSEQ 82
                 3457789*************************999855444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0027
    PF12763.2  47 kiwdladidedgkldfeefcia 68 
                    w+  d de+ ++df ef+ +
  MMETSP0890-20130614|35636_1 137 DRWKEMDWDENQSIDFSEFVYT 158
                  469999*************976 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.3e-05     0.045       3      24 ..      15      36 ..      13      37 .. 0.90
   2 ?    2.7   0.1     0.041        80       9      21 ..      57      69 ..      56      74 .. 0.88
   3 ?   -0.1   0.0      0.31   6.1e+02      16      23 ..     150     158 ..     149     160 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
                 HHHHHH--S----B-HHHHHHH CS
    PF13202.1  3 dtFrafDlNgDGkIsreELkrl 24
                 ++F+ +D + +G ++ +EL +l
  MMETSP0890-20130614|35636_1 15 KVFKMLDHDDSGALDTSELDQL 36
                 68*****************876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.041
                 --S----B-HHHH CS
    PF13202.1  9 DlNgDGkIsreEL 21
                 D++gD  Is++E+
  MMETSP0890-20130614|35636_1 57 DVDGDSNISFKEF 69
                 8999999****99 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.31
                  B-HHHH.HH CS
    PF13202.1  16 IsreEL.kr 23 
                  I+++E+ ++
  MMETSP0890-20130614|35636_1 150 IDFSEFvYT 158
                  9****9555 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0032      60     111 ..      17      70 ..       8      72 .. 0.88
   2 ?    0.6   0.4      0.25   4.8e+02      96     110 ..     141     155 ..      78     172 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.7e-06
    PF10591.4  60 FnqlDtnkdkvlsksElaplrapl...vklehCikeffksCDadkdkkisleEWc 111
                  F+ lD +  + l++sEl++l   l   vk e+  k+  k+ D+d d++is++E+ 
  MMETSP0890-20130614|35636_1  17 FKMLDHDDSGALDTSELDQLIDLLkipVKPEE-LKSIQKESDVDGDSNISFKEFF 70 
                  999*****************998886666666.79999***************95 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.25
    PF10591.4  96 sCDadkdkkisleEW 110
                  + D d++++i+++E+
  MMETSP0890-20130614|35636_1 141 EMDWDENQSIDFSEF 155
                  345555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.77
# Mc/sec: 541.51
//
Query:       MMETSP0890-20130614|35646_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-18   64.4   0.2    8.3e-18   64.2   0.1    1.0  1  PF01266.19 FAD dependent oxidoreductase
    7.5e-05   22.9   0.8    9.2e-05   22.6   0.1    1.5  2  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
    7.7e-05   22.5   0.4    9.7e-05   22.2   0.3    1.4  1  PF13450.1  NAD(P)-binding Rossmann-like domain
    0.00069   18.2   1.7    0.00088   17.8   1.2    1.1  1  PF04820.9  Tryptophan halogenase
     0.0012   18.6   0.0     0.0012   18.6   0.0    1.1  1  PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
     0.0022   17.6   0.1     0.0022   17.6   0.0    1.2  1  PF13454.1  FAD-NAD(P)-binding
     0.0052   15.7   0.9     0.0056   15.6   0.6    1.1  1  PF01946.12 Thi4 family
  ------ inclusion threshold ------
      0.013   14.3   0.1      0.015   14.0   0.1    1.1  1  PF05834.7  Lycopene cyclase protein
      0.015   14.6   0.1      0.016   14.5   0.1    1.2  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.016   13.9   0.1      0.016   13.9   0.1    1.0  1  PF00890.19 FAD binding domain
      0.025   13.4   0.2      0.027   13.3   0.1    1.1  1  PF03435.13 Saccharopine dehydrogenase
      0.029   13.3   0.1      0.029   13.3   0.0    1.1  1  PF01494.14 FAD binding domain


Domain annotation for each model (and alignments):
>> PF01266.19  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   7.3e-21   8.3e-18       1      90 [.       1      89 [.       1      92 [. 0.92

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 7.3e-21
                 EEEEE----HHHHHHHHHHH...TT-EEEEEESSSTTSSCGGGS-EEE-SSTCHCSCHHHHHHHHHHHHHHHHHHHHTSSTSBBCCEHCEEEC CS
   PF01266.19  1 dvviiGgGivGlstAyeLar...rglkVtllekgdiasgaSgrngglihagllkerdprllrlalesldllrelaaetgidvdfrrtgvldla 90
                 ++viiGgG  G+stAy+L++   ++++Vt++e+ +ia++aSg+ gg++++   ++r+ +   l  +s+dll++la+ ++++  +r+ ++l+++
  MMETSP0890-20130614|35646_1  1 KIVIIGGGLQGCSTAYWLKQkasSDIEVTIIERTGIAAAASGKGGGFLARN--WGRG-VTEALHEKSFDLLEDLAQTLPLKS-YRKLPTLQVT 89
                 59*******************99999*************************..9999.****************99988554.4788888775 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   8.1e-08   9.2e-05       1      31 [.       1      34 [.       1      41 [. 0.88
   2 ?   -2.8   0.0       6.6   7.5e+03       6      11 ..      44      49 ..      44      64 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 8.1e-08
                 EEEEE---HHHHHHHHHHHHTTS...EEEEEESS CS
   PF00070.22  1 rvvvvGGGyiGlElAaalaklgk...kVtvierr 31
                 ++v++GGG+ G+  A +l++ ++   +Vt+ier 
  MMETSP0890-20130614|35646_1  1 KIVIIGGGLQGCSTAYWLKQKASsdiEVTIIERT 34
                 79****************887754559*****96 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.6
                 ---HHH CS
   PF00070.22  6 GGGyiG 11
                 GGG+++
  MMETSP0890-20130614|35646_1 44 GGGFLA 49
                 667665 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   8.5e-08   9.7e-05       1      28 [.       4      34 ..       4      71 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 8.5e-08
    PF13450.1  1 IvGaGlsGlvaAylLaka...gkdvlvlekr 28
                 I+G+Gl G+++Ay L+++   + +v+++e+ 
  MMETSP0890-20130614|35646_1  4 IIGGGLQGCSTAYWLKQKassDIEVTIIERT 34
                 9***************9767799******85 PP

>> PF04820.9  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.2   7.8e-07   0.00088       1      42 [.       1      42 [.       1      46 [. 0.91

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7.8e-07
                 EEEEE-------HHHHHHHHCTTT-SEEEEEE-SSS------ CS
    PF04820.9  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvG 42
                 kivi+GGG  G  +A  l++  + ++evt++e   i     G
  MMETSP0890-20130614|35646_1  1 KIVIIGGGLQGCSTAYWLKQKASSDIEVTIIERTGIAAAASG 42
                 79********************999*******9999877666 PP

>> PF07992.9  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06    0.0012       1      38 [.       1      41 [.       1      89 [. 0.78

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-06
                 SEEEE----HHHHHHHHHH...HTTSEEEEECSSSSSTBTS CS
                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
    PF07992.9  1 dvviiGgGpaGlsaakdla...qkglkvaliekeggtcvnr 38
                 ++viiGgG  G+s+a  l+    ++ +v++ie++g     +
  MMETSP0890-20130614|35646_1  1 KIVIIGGGLQGCSTAYWLKqkaSSDIEVTIIERTGIAAAAS 41
                 69*****************99999*******9887555444 PP

>> PF13454.1  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.9e-06    0.0022       1      37 [.       3      37 ..       3      72 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.9e-06
    PF13454.1  1 aIiGaGprGlsvlerLlarakkekpleitvfdpspag 37
                 +IiG+G +G s++  L ++a  ++++e+t++++ ++ 
  MMETSP0890-20130614|35646_1  3 VIIGGGLQGCSTAYWLKQKA--SSDIEVTIIERTGIA 37
                 7******************8..**********98774 PP

>> PF01946.12  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   4.9e-06    0.0056      20      60 ..       2      46 ..       1      64 [. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.9e-06
                 EEEE-------HHHHHHHTS...TS-EEEEESS.S---------- CS
   PF01946.12 20 vvivGaGssGltaayylakk...dlkvailerk.lsiGGGawlGG 60
                 +vi+G+G  G ++ay l +k   d+ v+i+er  ++      +GG
  MMETSP0890-20130614|35646_1  2 IVIIGGGLQGCSTAYWLKQKassDIEVTIIERTgIAAAASGKGGG 46
                 89***************988899********97344333333344 PP

>> PF05834.7  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.3e-05     0.015       2      32 ..       2      33 ..       1      41 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
    PF05834.7  2 lvivGaGlAglllAlrl.reakpglrvllida 32
                 +vi+G+Gl g++ A+ l ++a  +++v++i+ 
  MMETSP0890-20130614|35646_1  2 IVIIGGGLQGCSTAYWLkQKASSDIEVTIIER 33
                 79***************6778899******75 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.4e-05     0.016       1      41 [.       2      46 ..       2      76 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
                 EEEE-----------HHHH.HHH-..EEEE----.HHHHHH---- CS
   PF02558.11  1 iailGaGaiGsllaakLak.agad..vtlilrsr.rlealkkngl 41
                 i+i+G G +G+  a+ L++ a  d  vt+i r+   ++a  k g 
  MMETSP0890-20130614|35646_1  2 IVIIGGGLQGCSTAYWLKQkASSDieVTIIERTGiAAAASGKGGG 46
                 89***************886777788*******976666555555 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.4e-05     0.016       2      70 ..       2      68 ..       1      83 [. 0.70

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
                 EEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-.----B---....GGGSS.S-HHHHHHHHH CS
   PF00890.19  2 vvViGsGlAGlaAAleaaeaglkvavvekeqetggataws.qGgidavlspeqkkagikdspdlhrtdtl 70
                 +v+iG+Gl G++ A+ ++++  + + v+  ++tg a+a+s  Gg +++++      g+++ + +  +d+l
  MMETSP0890-20130614|35646_1  2 IVIIGGGLQGCSTAYWLKQKASSDIEVTIIERTGIAAAASgKGGGFLARNWG---RGVTEALHEKSFDLL 68
                 79****************9888777777777777788888456655555222...345555555555555 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05     0.027       1      38 [.       2      40 ..       2      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.4e-05
   PF03435.13  1 vlvlGaGsvGqavaellarhgdvd.eitvadrtlekaqa 38
                 ++++G+G  G ++a +l+++ + d e+t++ rt   a+a
  MMETSP0890-20130614|35646_1  2 IVIIGGGLQGCSTAYWLKQKASSDiEVTIIERTGIAAAA 40
                 89*******************999********9877555 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.5e-05     0.029       4      45 ..       2      47 ..       1      70 [. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.5e-05
                 EEE--------HHHHHHHHH....HHEEEEESSSCCCH--.----B CS
   PF01494.14  4 VlIVGaGpaGlmlallLseaG...vrvvlvekhsttvvlp.rAdgl 45
                 ++I+G+G+ G ++a  L+++    ++v+++e+   ++  + +++g+
  MMETSP0890-20130614|35646_1  2 IVIIGGGLQGCSTAYWLKQKAssdIEVTIIERTGIAAAASgKGGGF 47
                 68***************987422256******98766655566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.83
# Mc/sec: 268.51
//
Query:       MMETSP0890-20130614|35644_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-10   39.3   0.0    6.6e-10   38.6   0.0    1.3  1  PF00787.19 PX domain
    7.7e-10   38.5   0.5      6e-08   32.5   0.2    2.4  2  PF13857.1  Ankyrin repeats (many copies)
    5.9e-09   36.0   0.6      1e-08   35.2   0.4    1.4  1  PF12796.2  Ankyrin repeats (3 copies)
    3.1e-06   27.4   1.4     0.0005   20.4   0.1    2.7  3  PF13637.1  Ankyrin repeats (many copies)
    1.8e-05   24.2   2.8     0.0013   18.3   0.2    3.3  3  PF00023.25 Ankyrin repeat
    0.00067   19.5   0.3       0.14   12.3   0.1    3.0  3  PF13606.1  Ankyrin repeat
     0.0055   16.2   0.0      0.011   15.3   0.0    1.4  1  PF08606.6  Prp19/Pso4-like
  ------ inclusion threshold ------
      0.029   14.6   0.0      0.053   13.7   0.0    1.4  1  PF08288.7  PIGA (GPI anchor biosynthesis)


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   3.8e-13   6.6e-10       9     111 ..      15     112 ..       3     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 3.8e-13
                  EEEEEE.CETSSEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTTTSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCHHHH..SHHHHHHHH CS
   PF00787.19   9 leretkgskkhsyylievelktgakewtvkRrYsdFeeLhskLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrk..sevltsFLe 111
                  +++e    +++  y+ie+ l++  k+w vk rYs F e ++   r+    ++ p+P k+ fg+  k  e++  krr++L+ +Lq l++         +v+++FL+
  MMETSP0890-20130614|35644_1  15 VGVE--TLGSYQAYVIECVLGE--KKWVVKQRYSAFDEVRKVVMRENV-HIVAPFPAKSMFGT--KLTEAQTIKRREQLQTWLQALCSPLPKNDaaRRVILDFLQ 112
                  4444..3466777777777776..6*****************999999.8899*********9..**********************987776677888888887 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0083        14      18      47 ..     220     250 ..     210     254 .. 0.78
   2 !   32.5   0.2   3.5e-11     6e-08       8      56 .]     244     292 ..     239     292 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0083
    PF13857.1  18 tpLhlAakggalevvrlLl.apgadlnlrds 47 
                    L  A+k g+l++v +Ll   ++ +n +d 
  MMETSP0890-20130614|35644_1 220 EGLRDAVKDGNLQAVTELLaSDPSLANYQDR 250
                  56889**************766666666665 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 3.5e-11
    PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                   +n++d++ ++ LhlA+  ++++++  L+++ga +n+++ +g+t+ldlA
  MMETSP0890-20130614|35644_1 244 LANYQDRQMESMLHLACIFNNADIALTLVRAGAKTNVKNHNGETPLDLA 292
                  6799999999**************************************9 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.4   5.9e-12     1e-08       4      66 ..     225     292 ..     222     304 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 5.9e-12
    PF12796.2   4 AaengnlelvklLlekgadvdl.....getpLhlAaeagnleivklLleagadvnakdkegntpLhlA 66 
                  A++ gnl++v  Ll++  ++        e+ LhlA++ +n +i+  L+ aga  n k+++g+tpL lA
  MMETSP0890-20130614|35644_1 225 AVKDGNLQAVTELLASDPSLANyqdrqMESMLHLACIFNNADIALTLVRAGAKTNVKNHNGETPLDLA 292
                  99*************998888665455555***********************************999 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.6   6.1e+03      40      50 ..      51      61 ..      49      62 .. 0.84
   2 !   20.4   0.1   2.9e-07    0.0005       5      50 ..     222     268 ..     221     272 .. 0.91
   3 !   12.7   0.2   7.4e-05      0.13       5      46 ..     256     299 ..     256     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 3.6
    PF13637.1 40 iAalrgnieil 50
                 ++++r+n++i+
  MMETSP0890-20130614|35644_1 51 KVVMRENVHIV 61
                 6899****998 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 2.9e-07
    PF13637.1   5 LhyaaisgrlelvklLlekgid.inrtdesGntaLhiAalrgnieil 50 
                  L+ a+++g+l++v  Ll+++++  n++d++ ++ Lh+A+ ++n +i+
  MMETSP0890-20130614|35644_1 222 LRDAVKDGNLQAVTELLASDPSlANYQDRQMESMLHLACIFNNADIA 268
                  67899**************9888*******************98886 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 7.4e-05
    PF13637.1   5 LhyaaisgrlelvklLlekgidinrtdesGntaLhiAa..lrgn 46 
                  Lh a+i+++ +++  L+  g+  n ++ +G+t+L++A+  l++n
  MMETSP0890-20130614|35644_1 256 LHLACIFNNADIALTLVRAGAKTNVKNHNGETPLDLALpsLANN 299
                  8****************88******************9665555 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12   2.1e+02       9      23 ..     225     239 ..     222     247 .. 0.82
   2 !   18.3   0.2   7.4e-07    0.0013       6      32 ..     256     282 ..     253     283 .. 0.94
   3 ?    2.3   0.0      0.09   1.5e+02       1       9 [.     284     292 ..     284     293 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.12
                  HHHTTHHHHHHHHHH CS
   PF00023.25   9 AalrgnlevvklLls 23 
                  A++ gnl+ v+ Ll 
  MMETSP0890-20130614|35644_1 225 AVKDGNLQAVTELLA 239
                  8999*********98 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 7.4e-07
                  HHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   6 LHlAalrgnlevvklLlsqGAdlnaqd 32 
                  LHlA++ +n++++  L+ +GA  n+++
  MMETSP0890-20130614|35644_1 256 LHLACIFNNADIALTLVRAGAKTNVKN 282
                  9***********************998 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.09
                  TSCBHHHHH CS
   PF00023.25   1 dGfTPLHlA 9  
                  +G+TPL lA
  MMETSP0890-20130614|35644_1 284 NGETPLDLA 292
                  7*****999 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         3   5.1e+03       9      24 ..     225     240 ..     222     244 .. 0.78
   2 !   12.3   0.1     8e-05      0.14       3      28 ..     253     278 ..     251     280 .. 0.89
   3 ?    3.7   0.0      0.05        85       1      12 [.     284     295 ..     284     304 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3
    PF13606.1   9 AasngrielveaLlen 24 
                  A++ g++++v +Ll +
  MMETSP0890-20130614|35644_1 225 AVKDGNLQAVTELLAS 240
                  7889999999998865 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 8e-05
    PF13606.1   3 nTpLhlAasngrielveaLlengadi 28 
                  ++ LhlA+ +++ +++  L+++ga  
  MMETSP0890-20130614|35644_1 253 ESMLHLACIFNNADIALTLVRAGAKT 278
                  678*******************9965 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.05
    PF13606.1   1 nGnTpLhlAasn 12 
                  nG+TpL+lA+ +
  MMETSP0890-20130614|35644_1 284 NGETPLDLALPS 295
                  8********865 PP

>> PF08606.6  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.4e-06     0.011      28      62 ..      83     117 ..      76     121 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.4e-06
    PF08606.6  28 rkqleqlrqeLsqaLYqhDAAvrViArllkerdea 62 
                  r+ql++  q L++ L ++DAA rVi  +l+e  e+
  MMETSP0890-20130614|35644_1  83 REQLQTWLQALCSPLPKNDAARRVILDFLQEPTEK 117
                  99***************************997765 PP

>> PF08288.7  PIGA (GPI anchor biosynthesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.1e-05     0.053      17      66 ..      24      73 ..      10      83 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.1e-05
    PF08288.7 17 kvYyvPllvlyrevtlptvlsllpllrkillrekidivhghqalstlahe 66
                 + Y + ++   ++ ++ + +s++  +rk+++re+++iv    a s+++ +
  MMETSP0890-20130614|35644_1 24 QAYVIECVLGEKKWVVKQRYSAFDEVRKVVMRENVHIVAPFPAKSMFGTK 73
                 5666777777788899999********************99999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 814.76
//
Query:       MMETSP0890-20130614|35650_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-16   58.2   1.8      9e-16   57.8   1.2    1.0  1  PF04511.10 Der1-like family
  ------ inclusion threshold ------
        1.1    9.1   9.1        1.3    8.9   6.3    1.1  1  PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)


Domain annotation for each model (and alignments):
>> PF04511.10  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   1.2   1.3e-19     9e-16      29     185 ..      11     161 ..       3     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 1.3e-19
   PF04511.10  29 lifdfnlvfkkvqiwRlltsllylgnlglqfllnlyflyqyssslEeshfkkraedylilLifgavlillltiianlsqlnlvvLgqvlitaivYvWsrkneqvqinffelirvkaeylPlvllifsillknesll..veligilsgylyfflkfnylr 185
                  l +d   ++ + q+wR++ + ++lg+  +++   ly l +y  +lE++  +   + y+ +Li+  +l++ l+ ++      l +  ++l+tai+Y  sr  ++ +i+f ++i++k  +lP+ l+++++l  +  +    ++ g+l++++  f++  +++
  MMETSP0890-20130614|35650_1  11 LALDLPSTLFRLQFWRPFSAACFLGKPSMSWATTLYLLIKYGCELEQEVGS---SAYAKFLILQFFLLIGLGSMIG-----LPFFANSLVTAIIYAASRLHPMANIQFQFGIKLKYYMLPFGLMVIEMLQAQSVAAiiPHICGVLTAHFHHFFAVVWPQ 161
                  4588899999**************************************544...5699999999999998888444.....56899*******************************************998543322578999****99999977665 PP

>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.3   0.00019       1.3     202     247 .]     205     251 .]     160     251 .] 0.69

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00019
    PF09849.4 202 gdddsdaagl.gdqgsngddddagfdDsgfddddldagdddgddddf 247
                  ++++s+++ +  d+++++dddd+ fdD++fdddd  ++dd+ +d+df
  MMETSP0890-20130614|35650_1 205 ASSSSNTQLVeLDDAEEEDDDDTLFDDTEFDDDDDLSDDDGLFDEDF 251
                  2223333322377888888899*********9988767779999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.87
# Mc/sec: 691.36
//
Query:       MMETSP0890-20130614|35647_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-37  129.2   0.4    7.8e-21   74.6   0.0    2.2  2  PF00733.16 Asparagine synthase
    2.1e-08   33.8   0.0    5.8e-08   32.4   0.0    1.7  2  PF13537.1  Glutamine amidotransferase domain
    1.8e-07   31.0   0.0    7.7e-06   25.7   0.0    2.4  2  PF13522.1  Glutamine amidotransferase domain
    0.00046   19.8   0.0    0.00091   18.9   0.0    1.4  1  PF06508.8  ExsB
     0.0037   17.3   0.6     0.0037   17.3   0.4    2.5  2  PF01508.11 Paramecium surface antigen domain
  ------ inclusion threshold ------
      0.037   13.7   0.0      0.092   12.4   0.0    1.7  1  PF01507.14 Phosphoadenosine phosphosulfate reductase family
      0.047   13.0   0.0       0.92    8.8   0.0    2.5  2  PF01171.15 PP-loop family
      0.059   12.1   0.0      0.095   11.4   0.0    1.3  1  PF02540.12 NAD synthase


Domain annotation for each model (and alignments):
>> PF00733.16  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.1   1.9e-17   3.2e-14       4     117 ..     202     331 ..     199     347 .. 0.89
   2 !   74.6   0.0   4.5e-24   7.8e-21     121     255 .]     466     581 ..     436     581 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.9e-17
                  HHHHHHHHHHGG.G-SEE-EE-----HHHHHHHHHTT...TSSEEEEEE---TSS-............-HHHHHHHHHH---E..EEE----HHHHH---HHHHHHHT-----..HHHHH---HHHHHHH- CS
   PF00733.16   4 elLkdavkrrlr.sdvpvgvllSGGlDSsviaalaar..esdpplktfsvgfeesead..........eaglaelvaehlgte..hveinvteeellellpevikhleepdat..ddsigiplylasrlar 117
                  + L +av+ r+  + + vg+l+SGGlDS v+aala++  +  +p+ +++v+f e++a+          ++ +ael a ++ ++  +ve+ +++ +l +  + +i +l++p+ t  d  i+ ++ +a+++++
  MMETSP0890-20130614|35647_1 202 STLSEAVRLRVCgASSSVGILFSGGLDSAVLAALAHKhaPPEEPIELINVAFGENHAAalrapdrlaaRRTFAELKAIAPTRDwrLVEVCIDRLQLRQ-SAIRIVSLIKPNLThmDFNIAAAIRHAAHGVG 331
                  67999***9998899**********************998899*************99*************************888888888888877.55667788999999899999999999999988 PP

  == domain 2    score: 74.6 bits;  conditional E-value: 4.5e-24
                  -SEEE-----TTT-----------S-HHHHHHHHHHHTTT--...............................-------TT---EEE-TT--HHHHHHHHT.B-GGGTEETTEE.....SHHHHHHHTS-S-HHHHT--- CS
   PF00733.16 121 vkvvLsGeGADElfgGysrhrrryesaglegllerellrklrallkaalesekeplereelldeltrlssrnlerddrvsmahglEvRvPflDerlvefals.lppelklrlgle.....KliLReaaeellpeeilerpK 255
                  ++ +L G GADEl++Gysrhr+ y++ g+e+l                           el ++ +r+++rnl+rddrv ++   E+R+PflDe +v ++ s   +e  ++l+l      K++LR++a+ l++e+ ++ +K
  MMETSP0890-20130614|35647_1 466 SRLLLLGMGADELLAGYSRHRTKYKNFGREALIA-------------------------ELDLDFNRIPQRNLGRDDRVVADAAREARFPFLDESVVHLIRStFQIEDIADLDLApgigcKRVLRDVARLLGLEHCATLQK 581
                  6889**************************9998.........................9999**************************************96788888888888********************999887 PP

>> PF13537.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   3.4e-11   5.8e-08      11     109 ..      31     127 ..      22     139 .. 0.72
   2 ?   -3.7   0.0         5   8.6e+03      46      64 ..     220     238 ..     217     247 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 3.4e-11
    PF13537.1  11 agaqPmvssedgrvvivfnGeiyNykelr.eeleakgy...kfrtesDtevllalleeleggeealkrlnGmfAfalwdkkekrlllaRDrlGikpLyygkde 109
                  + +qP v +e+  +++v nGe y+ ++ + + ++  +    + +   D ++ +a+l        +  +++G++Af+lw    + l+  RD++G + L +g  +
  MMETSP0890-20130614|35647_1  31 EWQQPAV-DETTGCILVWNGEWYDEEHEEcDTYRVLELavaTTKHCVDAQTACAAL-----TSTMRCKIRGEYAFVLWIPMLQCLIFGRDPFGRRSLLWGVPK 127
                  668****.57888**********975433134444444000445555666654444.....457889*******************************99876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5
    PF13537.1  46 gykfrtesDtevllallee 64 
                  g+ f++  D+ vl+al ++
  MMETSP0890-20130614|35647_1 220 GILFSGGLDSAVLAALAHK 238
                  5668889999999877665 PP

>> PF13522.1  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.5e-09   7.7e-06      30     124 ..      31     126 ..       8     138 .. 0.84
   2 ?    2.6   0.0     0.065   1.1e+02      67      90 ..     223     248 ..     215     279 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.5e-09
    PF13522.1  30 egaqPfssedgrvvlvhNGeiynye....elreelpakglafrtrsDsevllallkewGekal.erldgmfafaiwdkrekklllardrlgikpLyygkt 124
                  e +qP + e  + +lv NGe+y+ e    ++ + l+   ++++  +D +  +a+l    + ++  +++g++af++w    + l+  rd +g ++L +g+ 
  MMETSP0890-20130614|35647_1  31 EWQQPAVDETTGCILVWNGEWYDEEheecDTYRVLELAVATTKHCVDAQTACAAL----TSTMrCKIRGEYAFVLWIPMLQCLIFGRDPFGRRSLLWGVP 126
                  446***999999************9998888888888777788899999999999....777767******************************99875 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.065
    PF13522.1  67 frtrsDsevllallkewG..ekaler 90 
                  f +  Ds+vl+al+++++  e+ +e 
  MMETSP0890-20130614|35647_1 223 FSGGLDSAVLAALAHKHAppEEPIEL 248
                  66788*******99666556555454 PP

>> PF06508.8  ExsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.3e-07   0.00091       4      51 ..     221     271 ..     218     284 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.3e-07
    PF06508.8   4 vllSGGlDSttvlalakkeg...kevealtfdYgqrhkkeleaakkiakkl 51 
                  +l+SGGlDS++++ala+k+    + +e++++ +g++h++ l+a +++a++ 
  MMETSP0890-20130614|35647_1 221 ILFSGGLDSAVLAALAHKHAppeEPIELINVAFGENHAAALRAPDRLAARR 271
                  69****************9866678****************9999998765 PP

>> PF01508.11  Paramecium surface antigen domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4   2.1e-06    0.0037       3      43 ..      55      95 ..      53     109 .. 0.86
   2 ?   -4.5   2.9         8   1.4e+04       7      18 ..     401     412 ..     390     447 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.1e-06
   PF01508.11  3 thaeCqaylstCtvnadgtgCvelkaaCssyttqeqCkknk 43
                 +h+eC++y     ++a+++ Cv++++aC++ t++  Ck++ 
  MMETSP0890-20130614|35647_1 55 EHEECDTYRVLELAVATTKHCVDAQTACAALTSTMRCKIRG 95
                 699*******977778999******************9875 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 8
   PF01508.11   7 CqaylstCtvna 18 
                  C+  ++ Ctv+ 
  MMETSP0890-20130614|35647_1 401 CRRKNKLCTVHP 412
                  444444455543 PP

>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.4e-05     0.092       4      58 ..     221     279 ..     218     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.4e-05
                  EE-----HCHHHHHHHHHHCTTH...EEEEEE-TT--HHHHHHHHHHHHHTCTE.EEEE CS
   PF01507.14   4 vsvsgGkdslVllhLalkafkpv...pvvfvdtghefpetiefvdeleeryglr.lkvy 58 
                  +++sgG ds+Vl  La k  +p    +++ v  g+++   ++  d+l+ r  +  lk  
  MMETSP0890-20130614|35647_1 221 ILFSGGLDSAVLAALAHKHAPPEepiELINVAFGENHAAALRAPDRLAARRTFAeLKAI 279
                  68******************99444489*************999999999866656655 PP

>> PF01171.15  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00054      0.92       4      35 ..     221     251 ..     218     276 .. 0.75
   2 ?    1.2   0.0      0.12     2e+02      74      92 ..     518     536 ..     495     543 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00054
                  EE-----HHHHHHHHHHHCCTTTT-EEEEEEE CS
   PF01171.15   4 vAvSGGlDSmaLlkllkklkkklgiklvavhv 35 
                  + +SGGlDS +L  l++k+++  +  + +++v
  MMETSP0890-20130614|35647_1 221 ILFSGGLDSAVLAALAHKHAPPEE-PIELINV 251
                  669**************9987433.3444444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.12
                  --TTTHHHHHHHHHHHHCH CS
   PF01171.15  74 knleeaARelRYellkela 92 
                  + + +aARe+R+ +l+e +
  MMETSP0890-20130614|35647_1 518 RVVADAAREARFPFLDESV 536
                  557789*********9876 PP

>> PF02540.12  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.6e-05     0.095      21      66 ..     219     277 ..     200     328 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.6e-05
                  EEE------HHHH---HHHHHH.............TCGCEEEEE---SSTTHHHHHHHH CS
   PF02540.12  21 vvlGlSGGvDSalvaalavkal.............gkenvlalimPssvsseedvedal 66 
                  v +  SGG+DSa+ aala+k               g++++ al+ P+  + ++ + + +
  MMETSP0890-20130614|35647_1 219 VGILFSGGLDSAVLAALAHKHAppeepielinvafGENHAAALRAPDRLAARRTFAELK 277
                  44557**************9987777777777777777777777776666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       389  (0.0284523); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:00.99
# Mc/sec: 1495.91
//
Query:       MMETSP0890-20130614|35654_1  [L=986]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   23.6   0.3    0.00049   19.7   0.1    2.7  2  PF08146.7 BP28CT (NUC211) domain
  ------ inclusion threshold ------
      0.033   14.4   1.1        7.9    6.8   0.0    3.5  3  PF12755.2 Vacuolar 14 Fab1-binding region
      0.052   13.5   0.1        5.8    7.0   0.0    2.8  2  PF11333.3 Protein of unknown function (DUF3135)


Domain annotation for each model (and alignments):
>> PF08146.7  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.1e-07   0.00049      35     133 ..     734     827 ..     708     851 .. 0.74
   2 ?    0.5   0.0     0.087     4e+02      86     123 ..     929     966 ..     906     977 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.1e-07
    PF08146.7  35 iaeiEasvisalvalvlKlnevtFrpLFlklvdWaesgleekdesaskeRlitffkllnslaeklkslftsyasyl.lepvvelLkqt...nssdaeselkev 133
                   a++E+++++++++l lKl+e++       lv+W ++ +++   s+   R+++ff l++ +  +lk ++ + ++ + lep+++  ++     ss++++ +k++
  MMETSP0890-20130614|35654_1 734 DARLESYAVDLIMRLSLKLTESE-------LVEWLRA-AAKWGLSGDSIRKTAFFLLATTITARLKDIVAKHVASIaLEPAIDTIRSLsstISSNTSK-KKKR 827
                  479******************85.......8888865.56666899999*********************9977664788887766551113444433.2333 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.087
    PF08146.7  86 itffkllnslaeklkslftsyasyllepvvelLkqtns 123
                  ++ + +++++ ++  s +  +a++++++++e L+  ++
  MMETSP0890-20130614|35654_1 929 LAALTITKAIVTAIGSDVAYFANQMVQAIAECLEDPHT 966
                  4556789999***********************87655 PP

>> PF12755.2  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   7.1e+03      40      58 ..     141     159 ..     122     169 .. 0.74
   2 ?    4.2   0.0     0.011        49      17      90 ..     564     636 ..     547     643 .. 0.77
   3 ?    6.8   0.0    0.0017       7.9       3      41 ..     928     966 ..     926     969 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.5
    PF12755.2  40 dsrvRyyacEslyniakva 58 
                  ++   y  c  ly ia   
  MMETSP0890-20130614|35654_1 141 EELASYTRCQLLYEIAALQ 159
                  5556799999999998654 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.011
    PF12755.2  17 lekkvkefleeivkpvlacfsDkdsrvRyyacEslyniakvakgevlkflneifdalcklvaDsdesvkngael 90 
                  +++++ + l + ++  l++++ + ++ +  a+E+l  ++  + + + ++l++i ++l+ l  D d++v+ + e+
  MMETSP0890-20130614|35654_1 564 MRHRTLDLLAKTLPRALDALRSALAHSKIDAAETLLVLVASVPKYLHTHLEDILEILILLEED-DQNVQISNEY 636
                  4444777778888888888888888888899*************************9987766.6889877766 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0017
    PF12755.2   3 rkggligLaavaialekkvkefleeivkpvlacfsDkds 41 
                  r ++l+   a+  a++++v+ f +++v+ + +c++D+ +
  MMETSP0890-20130614|35654_1 928 RLAALTITKAIVTAIGSDVAYFANQMVQAIAECLEDPHT 966
                  5667777789999***********************876 PP

>> PF11333.3  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.018        80      10      45 ..     517     552 ..     514     555 .. 0.94
   2 ?    7.0   0.0    0.0013       5.8       7      36 ..     567     596 ..     562     598 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.018
    PF11333.3  10 vaLakedPealeqlrqelieeaIesaseeqqrrLrg 45 
                  ++La ++Pe +  l + +  +a+ +a++  ++rLr+
  MMETSP0890-20130614|35654_1 517 RQLASRAPEPFSGLVEAAATAACLAARAGIHNRLRA 552
                  58********************************97 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0013
    PF11333.3   7 deLvaLakedPealeqlrqelieeaIesas 36 
                   +L  Lak+ P+al++lr  l ++ I++a+
  MMETSP0890-20130614|35654_1 567 RTLDLLAKTLPRALDALRSALAHSKIDAAE 596
                  57888********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.41u 0.42s 00:00:01.82 Elapsed: 00:00:01.12
# Mc/sec: 2090.98
//
Query:       MMETSP0890-20130614|35664_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   15.3   0.0      0.019   14.2   0.0    1.6  1  PF12335.3 Myotubularin protein


Domain annotation for each model (and alignments):
>> PF12335.3  Myotubularin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-06     0.019     125     160 ..     227     262 ..     165     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.4e-06
    PF12335.3 125 qfaYtcvqdHpvWknqqFWeatfykdvqkqikelyl 160
                   +  + +q HpvW++  FW ++    v kq ++l +
  MMETSP0890-20130614|35664_1 227 EYLKSAIQSHPVWSDVAFWRDALTVCVDKQRRDLLH 262
                  577899****************99999999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       703  (0.051419); expected 273.4 (0.02)
Passed bias filter:                      538  (0.0393505); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 1413.85
//
Query:       MMETSP0890-20130614|35670_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-15   57.5   0.0    1.4e-14   54.4   0.0    2.1  1  PF13460.1  NADH(P)-binding
    9.2e-09   34.9   0.0    8.7e-08   31.7   0.0    2.2  1  PF01370.16 NAD dependent epimerase/dehydratase family
     0.0014   17.7   0.0      0.002   17.3   0.0    1.2  1  PF05368.8  NmrA-like family
  ------ inclusion threshold ------
      0.066   11.7   0.0       0.12   10.9   0.0    1.4  2  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
      0.088   12.6   0.0       0.23   11.2   0.0    1.9  1  PF00106.20 short chain dehydrogenase


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0     5e-18   1.4e-14       2     182 ..       4     215 ..       4     216 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 5e-18
    PF13460.1   2 aviGAtGktGrrivkellarghevtalvRnpsklpe....ssgvtivkkDlfdl..............edlaealagvdvvvdaf.........garpe..d..regvkhlldalkaagvrrlvvvsaaglyrdkpglfelldkplfkeylrakaaaeelleasgldwtivrPaalfeaeet.tyelite..............gdpagesaisraDvAaalvdele 182
                  a++GA +  Gr ++k+ l+ g +v+ l+R+   +++    +++++++     +               + la a++g+dv+++++         g+ ++  d  ++  + l++a+k ag +++v+ s + +  d+p            +y +aka+a ell++sg+++ + rP ++f++  + ++ l ++              ++ a  ++i+++D+A+ l+ +++
  MMETSP0890-20130614|35670_1   4 AITGALSYSGRYVAKRVLDDGGQVVNLSRRRRPISSdplsQHQIKYLA----EHrwpmawdenestttKNLALAMEGCDVLICTYwirfdqklqGSNDSllDtaVQRCNVLFNAAKLAGLKKIVFTSHTHASIDSPF-----------DYIAAKARAVELLRESGVNYAVARPCGIFGDTPAeSILLNSAawlmrrvpiflapgNGGARFQPIHARDMADLLFTLAQ 215
                  79****************************998888666534444332....112222222233343366778899*********9888777654433355266889999************************999...........9*****************************97551555544488888899998875556777**********9998775 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.2e-11   8.7e-08       2     227 ..       4     218 ..       3     225 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.2e-11
                  EEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHHTBEEEB--TT-HHHHHHHHHHHT.SEEEE--S---.HHHCC.CSHHHHHHHHT---HHHHHHHH.HHTT.EEEEEEEGGG---BSSSCB-TTS----SSH..HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE-TT...-SHHCHHHHHHHHHH---S.EEEE--TT-EEEEEEHHHHHHHHHHHHHSSS CS
   PF01370.16   2 lVtGatGfiGsalveallekgyevvnlirrtrseslatvrirvelveldltdkdalerlfaeeqpdaVihlAaesg.vdass.edpadfieanvegtlnlleaar.kagvkrflfasSsevygkdaeqpikEetplgplsp..YaaaKlageklveayaeeyglnaiilrlfnvyGprnfdeevshvipalirkilegee.vtllgdGtqlRdflyveDvaealllvlehgd 227
                   +tGa  + G+++++++l+ g +vvnl+rr+r  s+ + +     +++ ++ + +   + +e++ ++  +lA     +d  + ++   f ++    +  ll+ a  +++v     +  + + g + +  ++  t  +  sp  Y aaK+ + +l+++     g+n+ + r++ ++G        ++++ + ++ + ++ + ++  g+G ++ + ++++D+a++l ++++ ++
  MMETSP0890-20130614|35670_1   4 AITGALSYSGRYVAKRVLDDGGQVVNLSRRRRPISSDPLS----QHQIKYLAEHRWPMAWDENESTTTKNLALAMEgCDVLIcTYWIRFDQKLQGSNDSLLDTAVqRCNV----LFNAAKLAGLK-KIVFTSHTHASIDSPfdYIAAKARAVELLRE----SGVNYAVARPCGIFGDT----PAESILLNSAAWLMRRVPiFLAPGNGGARFQPIHARDMADLLFTLAQDVN 218
                  59******************************99887765....556666666666666666666666666644444666665555555555555556666655512222....33334444444.45556666665556666******99999654....47***************....888888888888888888688899*******************9999877 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.2e-07     0.002       2     199 ..       4     220 ..       3     242 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.2e-07
                  EESS----HHHHHHHHHHH---EEEEE-S--........---HHHHHHHSTTEEE..---TT-HHHHHHHH----EEEE---TT-............--TTT---HHHHHHHH---SEEEEEE---GG.G-.------TTTHHHHHHHHHHHH----EEEEE.---BGGG-BSSS-SBEEE----.-EEEEESS-TTS-EE.-HHHH---HHHHHHH--TTT CS
    PF05368.8   2 lviGaTGrqGksvvraslkaghkvralvRdl........kselakslkaaGvelv..egdlddkeslvealkgvdvvfsvttfve............skeiedgkklvdAakeaGvkrfvpSelgndndrsnaeePavplfdeKaeveeyiralgipyTfvy.agffmenflsllaqvgdlepsrdkvvllgpgnpkavll.dkeeDiGtfvikilkdprkl 199
                  +++Ga  + G++v++ +l++g +v  l R          +++ +k l++    +   e++    + l+ a++g dv +++                 ++ ++    l +Aak aG k++v+ + + ++       P     ++Ka+  e +r++g++y   + +g+f +  ++++  +++   +r   ++l+pgn  a +  ++ +D++     +++d++ +
  MMETSP0890-20130614|35670_1   4 AITGALSYSGRYVAKRVLDDGGQVVNLSRRRrpissdplSQHQIKYLAEHRWPMAwdENESTTTKNLALAMEGCDVLICTYWIRFdqklqgsndsllDTAVQRCNVLFNAAKLAGLKKIVFTSHTHASID----SPF-DYIAAKARAVELLRESGVNYAVARpCGIFGDTPAESILLNSAAWLMRRVPIFLAPGNGGARFQpIHARDMADLLFTLAQDVNST 220
                  588999999******************9999899999999999999999877777668888999***************987544568999999999899999999***************999888833....444.56799999999**********997579***99999999989999999899999****9999999999****9999999997655 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.4e-05      0.12       2     119 ..       5     130 ..       4     139 .. 0.75
   2 ?   -4.0   0.0       1.5   4.1e+03     177     185 ..     160     168 ..     149     179 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.4e-05
   PF01073.14   2 VtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvkt.........vlegDvtdkekleealegvdvvihtaaiidvlg.kaerdeilkvnvkGTqnvleacvkagvrvlvYtSsaev 119
                  +tG+  + Gr++ ++ l+ +   +v  l +r +p  ++ ls+ q+k            e   t +++l+ a+eg dv+i t  i    + + ++d++l+  v+  + + +a++ ag +++v+tS +++
  MMETSP0890-20130614|35670_1   5 ITGALSYSGRYVAKRVLDDG--GQVVNLSRRRRPISSDPLSQHQIKYlaehrwpmaWDENESTTTKNLALAMEGCDVLICTYWIRFDQKlQGSNDSLLDTAVQRCNVLFNAAKLAGLKKIVFTSHTHA 130
                  78888888888888888877..466666666666666666666655555556744444555677889999***********877544444889*******************************8765 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.5
   PF01073.14 177 RpagiyGeg 185
                  Rp gi+G+ 
  MMETSP0890-20130614|35670_1 160 RPCGIFGDT 168
                  999999965 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.5e-05      0.23       4      46 ..       4      49 ..       2     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-05
                 EE---------HHHHHHHHHSSEEEEEEESS....SHHHHHHHHHH CS
   PF00106.20  4 liTGGlgglGlalArwLveegarhlvlvsrr...edapgaaeliae 46
                  iTG+l+  G+ +A++ +++g++++ l  rr   ++ p  +  i+ 
  MMETSP0890-20130614|35670_1  4 AITGALSYSGRYVAKRVLDDGGQVVNLSRRRrpiSSDPLSQHQIKY 49
                 69******************88777777777776444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.70
# Mc/sec: 1170.79
//
Query:       MMETSP0890-20130614|35675_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-10   38.7   3.4    7.1e-10   37.9   2.3    1.4  1  PF10444.4 Nbl1 / Borealin N terminal
     0.0032   17.2   1.1     0.0032   17.2   0.7    2.4  3  PF10512.4 Cell division cycle-associated protein 8
     0.0086   15.8   0.7      0.023   14.4   0.5    1.7  1  PF10241.4 Uncharacterized conserved protein
  ------ inclusion threshold ------
      0.078   12.8   0.4       0.13   12.1   0.2    1.4  1  PF10146.4 Zinc finger-containing protein


Domain annotation for each model (and alignments):
>> PF10444.4  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   2.3   2.1e-13   7.1e-10       3      59 .]      29      85 ..      27      85 .. 0.96

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 2.1e-13
    PF10444.4  3 laalLqnfdlEveeRierlrshyenllkklrarleieilriPravRkmklrdlleky 59
                 l+++L ++ +E e R++++r  +  + ++++++ ++e+ +iPr+vR mklr+++e+y
  MMETSP0890-20130614|35675_1 29 LETVLLELERESERRVKKMRRAMDDMKQSFLNAFQVELVKIPRRVRSMKLRTFIEEY 85
                 7789***************************************************97 PP

>> PF10512.4  Cell division cycle-associated protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.9   6.5e+03      82     106 ..      26      49 ..      23      57 .. 0.64
   2 !   17.2   0.7   9.3e-07    0.0032      19      62 ..     100     141 ..      91     173 .. 0.76
   3 ?   -0.3   0.0      0.24   8.4e+02      93     115 ..     208     230 ..     192     231 .] 0.82

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.9
                  TTT--HHHHHTS-TTT---HHHHHH CS
    PF10512.4  82 adevdsllvekldedtleeikkLqe 106
                  +de++++l+e l+ +  + +kk+ +
  MMETSP0890-20130614|35675_1  26 GDELETVLLE-LERESERRVKKMRR 49 
                  6788887775.56666666666655 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 9.3e-07
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX--------------.-- CS
    PF10512.4  19 sadratpaiTPrvdprtpktallRsarlgekvysisnGsplvag 62 
                  s + ++  +TPr   + p ++++R+ar+ge+ +s+  Gspl  +
  MMETSP0890-20130614|35675_1 100 SRSITQISATPRAPMSRP-LPASRTARPGETLLSVN-GSPLLPS 141
                  444445567999988888.****************9.***9755 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.24
                  S-TTT---HHHHHHHHHHHHHHS CS
    PF10512.4  93 ldedtleeikkLqenLqkivkka 115
                  +++ +++++  Lq+ +++++k++
  MMETSP0890-20130614|35675_1 208 IKSTVMSQLSALQADIANVMKSL 230
                  77888999999999999999886 PP

>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.5   6.7e-06     0.023      32      79 ..      31      79 ..      24      85 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.7e-06
    PF10241.4 32 reLlelnalsqarLkevraefa.egtrllkemkkDLdwifkkvrslksk 79
                  +Llel+  s++r+k++r  +  ++   l++ + +L  i ++vrs+k +
  MMETSP0890-20130614|35675_1 31 TVLLELERESERRVKKMRRAMDdMKQSFLNAFQVELVKIPRRVRSMKLR 79
                 68****************99962566789*****************965 PP

>> PF10146.4  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.8e-05      0.13      64     149 ..      28     126 ..      24     180 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.8e-05
    PF10146.4  64 dlEniikqseeekekrlekinrlyeeylrlkeeidekrkey......lglekLpeleeeegskiskdrfekarsplepeasvtalPssssg..........f 149
                  +lE+++ + e e e+r++k++r+++++++  +++++ + e+          kL++  ee g  +  + +++a++p++  ++++a+P  + +           
  MMETSP0890-20130614|35675_1  28 ELETVLLELERESERRVKKMRRAMDDMKQ--SFLNAFQVELvkiprrVRSMKLRTFIEEYGGSVD-EALKRATDPSRSITQISATPRAPMSrplpasrtarP 126
                  7999*********************9985..2333333333222444566799********9999.99*********9999*****9943324444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 938.23
//
Query:       MMETSP0890-20130614|35676_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 1031.84
//
Query:       MMETSP0890-20130614|35681_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-08   33.6   0.0    7.2e-08   32.7   0.0    1.5  1  PF08242.7 Methyltransferase domain
    4.1e-08   33.4   0.1    6.7e-08   32.8   0.0    1.4  1  PF08241.7 Methyltransferase domain
    2.9e-07   30.1   0.1    4.1e-07   29.7   0.0    1.1  1  PF13489.1 Methyltransferase domain
      7e-07   29.4   0.2    1.4e-06   28.4   0.2    1.5  1  PF13649.1 Methyltransferase domain
    5.6e-05   22.6   0.0      8e-05   22.1   0.0    1.2  1  PF13847.1 Methyltransferase domain
      9e-05   22.9   0.0    0.00014   22.2   0.0    1.4  1  PF12847.2 Methyltransferase domain
    0.00015   20.8   0.0    0.00022   20.3   0.0    1.1  1  PF03848.9 Tellurite resistance protein TehB
     0.0057   16.2   0.0     0.0062   16.1   0.0    1.3  1  PF13679.1 Methyltransferase domain
  ------ inclusion threshold ------
      0.011   14.9   0.1       0.02   14.1   0.0    1.5  1  PF05175.9 Methyltransferase small domain
      0.059   12.5   0.0      0.083   12.0   0.0    1.2  1  PF05891.7 AdoMet dependent proline di-methyltransferase
       0.19   11.6   0.7       0.89    9.4   0.2    2.3  2  PF13659.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   5.8e-11   7.2e-08       1      97 [.      64     160 ..      64     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 5.8e-11
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl.kdir.evldnirklLkpgG 97 
                  L++GcG+G+l+ al  +   ++++++D s+s ++      ++r+   ++++   +++ +++++ +  D +v+  +l+h+ ++++ ++++++ ++L+ gG
  MMETSP0890-20130614|35681_1  64 LDFGCGVGRLSAALIHR--FLSVVCIDHSQSHLDTMMTLNHRRILPLHSKFAGAEIEHFNQKEHGGADFAVSVLTLQHMiPELQaAAIEHLCDALAIGG 160
                  8****************..**************66666666666667778888888889999999***************7777699*******99998 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   5.4e-11   6.7e-08       1      94 [.      64     163 ..      64     164 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 5.4e-11
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeel.pfednsfDvvvssevlehl..edpekalkeiaRvLkpgGllv 94 
                  Ld+GcG g+l++al +r + +v+++D s++ l+t+ + ++++ l     +  a +e++ + e +  D+ vs+ +l+h+  e +++a++ ++  L  gG  +
  MMETSP0890-20130614|35681_1  64 LDFGCGVGRLSAALIHR-FLSVVCIDHSQSHLDTMMTLNHRRILPlhskFAGAEIEHFnQKEHGGADFAVSVLTLQHMipELQAAAIEHLCDALAIGGAAY 163
                  8****************.************9999999999988889999*********555588***************9999999999999999999876 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.3e-10   4.1e-07      23     153 ..      60     206 ..      43     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3.3e-10
    PF13489.1  23 ggrvLDiGcGtGillellaengfdvtgvDpspaaigk...............akqaqksqfdeedaaepagkfdlivarevlehvpd..peellrqiaellkpgGylllstpnas...lasdeafakwdylvprgthisffsaeslkelle 153
                  g+  LD+GcG G+l++ l  ++ +v+ +D s                        a+ + f    +++ +g +d+ v+  +l h+     +++++++ ++l+ gG ++++t   +   ++ + + + ++   ++g h++++  +++k+ l+
  MMETSP0890-20130614|35681_1  60 GNIALDFGCGVGRLSAALIHRFLSVVCIDHSQSHLDTmmtlnhrrilplhskFAGAEIEHF----NQKEHGGADFAVSVLTLQHMIPelQAAAIEHLCDALAIGGAAYIQTLTFYtdaPYIAARCDPNRATLEPGMHLHYLPLDEIKRHLQ 206
                  5678**************99999*******7554444889998877765555333333333....556789**************977788********************7633233444444555666666679999999999998766 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.2   1.1e-09   1.4e-06       1     101 []      63     160 ..      63     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.1e-09
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl..kvkfvqadaralpf.eegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  +ld GCG Gr  +al++++      +v+++D s+  l++  + + ++ l  + kf  a ++++ + e+g  d+ v+  l+l+h  p+ + a++e++++ l  gG
  MMETSP0890-20130614|35681_1  63 ALDFGCGVGRLSAALIHRF-----LSVVCIDHSQSHLDTMMTLNHRRILplHSKFAGAEIEHFNQkEHGGADFAVS-VLTLQHMIPELQAAAIEHLCDALAIGG 160
                  59****************9.....9**************9988866333559999999998876516669999999.567***999999999**9999988776 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   6.4e-08     8e-05       5     112 ..      61     168 ..      59     203 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 6.4e-08
    PF13847.1   5 ikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklle.esfDlvisnevl.nal.adpqkvlkeiervlkpggrlivesps 112
                  +  lD GCG G+l+ +l ++  +   vv+iD s+  +  + ++  +  +    +F  ++ie+++++ e    D+ +s  +l + +   ++++++ +++ l  gg+ ++++  
  MMETSP0890-20130614|35681_1  61 NIALDFGCGVGRLSAALIHRFLS---VVCIDHSQSHLDTMMTLNHRRILPlHSKFAGAEIEHFNQK-EhGGADFAVSVLTLqHMIpELQAAAIEHLCDALAIGGAAYIQTLT 168
                  678***************98766...************99995555555557**********9987.4589*******99985551555678999********999998765 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.1e-07   0.00014       5     109 ..      62     164 ..      60     194 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.1e-07
    PF12847.2   5 i.lDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsllerfDavllkgltldallaldeprrvlealpkllkpggrlvi 109
                  i lD GcG+G+ls++l    +   vv +D s+  l+ +    +++ l  + ++  +++ ++++++ +  D+++    tl+++++   + +++e+l ++l+ gg   i
  MMETSP0890-20130614|35681_1  62 IaLDFGCGVGRLSAALIH--RFLSVVCIDHSQSHLDTMMTLNHRRILPLHSKFAGAEIeHFNQKEHGGADFAVSVL-TLQHMIPE-LQAAAIEHLCDALAIGGAAYI 164
                  66****************..*************9999987763333444444555666555555555577777766.44444444.455556666677776666555 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.7e-07   0.00022      34     131 ..      63     164 ..      59     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.7e-07
                  EEE-------HHHHHHH----EEEEES-HHHHHHHHHHHHHTT-TEEEEE-..-GGG------..BSEEEEES-GGGS-GGG----HHHHHHTB-----EEE CS
    PF03848.9  34 aldlGcGqGrnslflsllgydvtavdkneasiailqeiaekenldlkaaly..dinaasldee..ydfilstvvlmflqaeripeiianmqektkvGGynli 131
                  ald+GcG Gr s  l  +   v ++d++++ ++++ ++ ++  l l+++    +i++ + +e+   df +s + l  + +e  ++ i+ +      GG   i
  MMETSP0890-20130614|35681_1  63 ALDFGCGVGRLSAALIHRFLSVVCIDHSQSHLDTMMTLNHRRILPLHSKFAgaEIEHFNQKEHggADFAVSVLTLQHMIPELQAAAIEHLCDALAIGGAAYI 164
                  79*******************************************9988751156555555443369****9999999999988889888888888886665 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     5e-06    0.0062      30      97 ..      64     139 ..      37     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5e-06
    PF13679.1  30 vDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfaegtiaeatp................k 97 
                  +D+G+G g L+ +l +        l+vv+id ++++ ++ ++l+++    +  + +fa ++i++ ++                +
  MMETSP0890-20130614|35681_1  64 LDFGCGVGRLSAALIH------RFLSVVCIDHSQSHLDTMMTLNHRRI--LPLHSKFAGAEIEHFNQkehggadfavsvltlqH 139
                  7**************9......479******************99988..4445555555555554444566544444444440 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05      0.02      34      68 ..      62      94 ..      35     106 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.6e-05
                 ---B-------HHHHHHHH-TT----EEESBHHHH CS
    PF05175.9 34 kvlDlGcGaGvlgaalakespelevtlvDinarAv 68
                  +lD+GcG+G l+aal ++  +  v+++D +++ +
  MMETSP0890-20130614|35681_1 62 IALDFGCGVGRLSAALIHRFLS--VVCIDHSQSHL 94
                 479*************998877..99999887665 PP

>> PF05891.7  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.7e-05     0.083      57      86 ..      61      90 ..      47     121 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.7e-05
    PF05891.7 57 kvaldcGaGiGrvtknlLlkllskvDlvep 86
                 ++ald G+G+Gr++  l++++ls v +   
  MMETSP0890-20130614|35681_1 61 NIALDFGCGVGRLSAALIHRFLSVVCIDHS 90
                 579*******************98865444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00072      0.89       5     113 ..      64     164 ..      60     167 .. 0.80
   2 ?   -2.3   0.0       3.2     4e+03      76      88 ..     171     183 ..     169     215 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00072
    PF13659.1   5 ldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvl 113
                  ld gcG G + +a+ ++    +++++ +   ++   +  +r  l+    ++ + ++++  +   g +d+ v+     ++        +l +a++e+++++l+ gG++++
  MMETSP0890-20130614|35681_1  64 LDFGCGVGRLSAALIHRF-LSVVCIDHSQSHLDTMMTLNHRRILPLHSKFAGAEIEHFN-QKEHGGADFAVSVLTLQHM---I---PELQAAAIEHLCDALAIGGAAYI 164
                  9****************9.9999999999999888877777666666778888888888.6778889999987776643...3...35778889999999999998886 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.2
    PF13659.1  76 tnpPygpragara 88 
                  t+ Py+ +  +++
  MMETSP0890-20130614|35681_1 171 TDAPYIAARCDPN 183
                  7788876532222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.41s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 872.12
//
Query:       MMETSP0890-20130614|35701_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.2   0.1    1.7e-08   33.8   0.1    1.2  1  PF03259.12 Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> PF03259.12  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   1.2e-12   1.7e-08       4      80 ..      11      88 ..       8      98 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.2e-12
   PF03259.12  4 ellellqrvpgvrgalvvskdGlvlasstldnddadrlAalasgllaaakalarelg.egelkelliegkkgelyltp 80
                 +l+e++ + + v+ga++++ +G +l + ++d  +a+ ++ala++++++ + +  + + +ge+  ++ eg +g l + +
  MMETSP0890-20130614|35701_1 11 ALVEEIVDRKKVHGAMLMTTKGSLLVMAGFDGMEAQVTGALAANVWSYFSHVNVKYPdAGEMSTMVFEGSEGILAVSS 88
                 68999********************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.52
# Mc/sec: 663.61
//
Query:       MMETSP0890-20130614|35712_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.7   3.4        0.3   10.9   2.0    1.6  1  PF10397.4 Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> PF10397.4  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.0   2.2e-05       0.3      20      67 ..      30      88 ..      20      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
    PF10397.4 20 ReeahelVqeaamkawe...........egkdlrellladpevakylseeeldalfdpe 67
                 +e++h+ V   a+  ++           +++ lre l++++++a  l +e+ +alf+ +
  MMETSP0890-20130614|35712_1 30 KETSHHTVATSALDWAKamrrerdeavrTNQRLREDLQEKAKIATTLGQEQANALFELA 88
                 78888888888888777777777777778999***********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1025  (0.0749707); expected 273.4 (0.02)
Passed bias filter:                      651  (0.0476156); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.69
# Mc/sec: 333.41
//
Query:       MMETSP0890-20130614|35734_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.41s 00:00:01.30 Elapsed: 00:00:00.90
# Mc/sec: 1608.22
//
Query:       MMETSP0890-20130614|35732_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-33  112.8   4.2    1.4e-32  112.3   2.9    1.2  1  PF01595.15 Domain of unknown function DUF21
    2.3e-17   62.2   2.4    1.6e-08   33.9   0.1    2.7  2  PF00571.23 CBS domain
    4.5e-13   48.6   0.1    1.4e-12   47.1   0.0    1.8  1  PF03471.12 Transporter associated domain


Domain annotation for each model (and alignments):
>> PF01595.15  Domain of unknown function DUF21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   2.9   3.1e-36   1.4e-32       3     181 ..      18     198 ..      16     200 .. 0.95

  Alignments for each domain:
  == domain 1    score: 112.3 bits;  conditional E-value: 3.1e-36
   PF01595.15   3 lliivlllllsaffsaaEtAlvslsrsrleelaeegnkkakrllkllknperllatlllgntlanillgalatlalaellgel.lavllavlvltllilvfgEilPktlalrnperialllapplrvllkllyPlvwllsklanlllrllgvkp..eeepavteeelralveeseeegvlee 181
                  +l++  l +lsa++ +aE+A+++l + +++e a++  ++++    l ++ +r+l+++l+  t an+  +a+ +  ++ llg+    ++la+++lt+ +l+fgE+lPk+++++n+er+a++l+p+++ l+++l P+  l+s++a+ llr++   +  + e+av+eeelr +v  ++++g +e+
  MMETSP0890-20130614|35732_1  18 ILAFTGLFCLSALLHSAEVAITTLYPWKVKEFADDEGPRSA-FAALDQDITRTLTAILVATTCANVCSTAIFADCATTLLGNApKYLALATGILTAGTLFFGELLPKAIGVNNAERVARALVPVVNALSIVLGPVGVLFSASAKTLLRTFFRIEfrAVESAVSEEELRLIVGGATRSGGIES 198
                  789999***************************99777766.7799***********************99999999****9999****************************************************************999999***********************9997 PP

>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.2   3.4e-10   1.5e-06       1      55 [.     215     272 ..     215     274 .. 0.95
   2 !   33.9   0.1   3.5e-12   1.6e-08       8      56 ..     367     415 ..     359     416 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.4e-10
                  HHHHCCS..SCCEEETTSBHHHHHHHHHHHTTSEEEEEEET.TEB---EEHHHHHHHH CS
   PF00571.23   1 vgdlmtk..dvvtvppdetlsealeilrktgvsrlpVvDed.grlvGiitlrDllkal 55 
                  v+++m++  +v ++++++++   l++  +tg+sr+pV  +d +++vG++  + ll +l
  MMETSP0890-20130614|35732_1 215 VAEIMRPrvEVDALEENDSMLALLSLVNATGHSRIPVYRDDiDNVVGVVNAKKLLDFL 272
                  789****999999*************************999*************9998 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 3.5e-12
                  SCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHHHH CS
   PF00571.23   8 dvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllkall 56 
                  +  +vp+++   ++le +r+++v+ ++VvDe g  +G++tl+D+l++++
  MMETSP0890-20130614|35732_1 367 PTYFVPETMLTWKVLEEMRRRRVHMAIVVDEFGGTAGMVTLEDILELVV 415
                  556788888889*********************************9875 PP

>> PF03471.12  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0     3e-16   1.4e-12       9      80 ..     450     525 ..     445     526 .. 0.87

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 3e-16
                  EE----BHHHHHHHHT-T---.-.....--SB----HHHHH-S------EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   PF03471.12   9 lvdGrapldeleeelglelpe.e.....dyeTlgGlvlellgriPeegesvevdleglrfeVlevdgrrikkvrvekl 80 
                   ++G+ap+ +l ++l+++ +e +     d++T +Glv+   g +P+ g+++ v   +++feVle+d+rr+ ++r++kl
  MMETSP0890-20130614|35732_1 450 DIKGTAPVYDLVDALHIPKDEiDvdtlpDVTTAAGLVCYYAGELPVAGDHIFVA--SFDFEVLEADERRVYRIRARKL 525
                  789**************97774454555799******************55555..******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:01.12
# Mc/sec: 1172.73
//
Query:       MMETSP0890-20130614|35736_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-15   55.5   0.2    1.2e-14   54.2   0.1    1.6  1  PF10442.4 FIST C domain
      6e-15   54.8   0.1    3.4e-14   52.3   0.0    2.2  3  PF08495.5 FIST N domain


Domain annotation for each model (and alignments):
>> PF10442.4  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   1.8e-18   1.2e-14      19     135 ..     235     374 ..     215     375 .. 0.81

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 1.8e-18
    PF10442.4  19 laqlslplglergeeyes....vrhpigvdpeegslafaed.v.eeGtelqlmlrdaealiadarraleea.........agrepagallfdCagR.kllfgeaeddeveivrealgddvpl.........aGfftyGEigp 135
                  l q+sl++gl + +e+ +    +r+++g +  +g++a++++ + e+ t+l+++ rd e+++ +++++l++          +g +p+++ll++C gR k +f+ + + e+  +++++ ++            aGff++GEigp
  MMETSP0890-20130614|35736_1 235 LLQNSLLVGLTESDESTKqdflIRTVVGATS-DGAIAIGDNtIsENSTRLRIHVRDGETARTELDNLLQRYsleraitgfSGVRPSAILLCACNGRgKNMFR-ESNFEINKLSSVFTSSDEAspdvssipvAGFFANGEIGP 374
                  34567999999865555569*********87.******99734355689*******************************999*******************.8888888888888654222344444444*********98 PP

>> PF08495.5  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0     5e-18   3.4e-14      13     198 .]      20     213 ..       8     213 .. 0.90
   2 ?   -1.5   0.0      0.15   1.1e+03      25      41 ..     253     269 ..     221     300 .. 0.63
   3 ?   -1.9   0.0       0.2   1.3e+03      27      60 ..     358     389 ..     351     425 .. 0.62

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 5e-18
    PF08495.5  13 ydeeae.llealrealp.gvpvvGcstageitt..edegepalsvtllalpsaelrvfsgliedlslddlesaaeageelvealrsdg....dpfalllvdglsgneeelleglddaagpsvpivGGlAgdglrfertvvfangqvyedgavvvllsg..slkfgtavaqgfepigepfvVTkaegnvvleLdgep 198
                  ++ e + ++++  e+l    ++++  ++g i++  e e ep  s+ +  l++a   +f+  + + s  ++ + +ea+ e  +  r+ +     p++l++ d++s+  +  le + d+  p  ++vGGl++   +  +   ++++ ++ + +++v+lsg  +  ++++ aqg   ig+ f+VT+ + n v++Ld ep
  MMETSP0890-20130614|35736_1  20 FELEFSeIVHEAYERLNkPKTMITVLGSGTIGGgrELEFEPCISILAGELKNAKSDFFKFGTRSSSTTPITNNKEAWAETSALFRRLQkeerVPSFLCFGDPTSPVPS-ALEFI-DECLPKSVVVGGLSSPTKSGISSLALNDQVLAPGTVAGVALSGnaGFALHSVTAQGALGIGPTFKVTSGRLNLVHTLDAEP 213
                  555556677777777777999*****************************99999999999999999**********9998888887788999***********9998.88899.999****************************************988*********************************98 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.15
    PF08495.5  25 ealpgvpvvGcstagei 41 
                  + +   +vvG+++ g i
  MMETSP0890-20130614|35736_1 253 QDFLIRTVVGATSDGAI 269
                  33333344444444444 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.2
    PF08495.5  27 lpgvpvvGcstageittedegepalsvtllalps 60 
                  + ++pv G  + gei++  +g    s +    +s
  MMETSP0890-20130614|35736_1 358 VSSIPVAGFFANGEIGP--TGAVIPSSSSDDKKS 389
                  56778888888888888..443333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:01.29
# Mc/sec: 795.07
//
Query:       MMETSP0890-20130614|35739_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       524  (0.0383265); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:00.93
# Mc/sec: 507.62
//
Query:       MMETSP0890-20130614|35753_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       104  (0.00760679); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 343.48
//
Query:       MMETSP0890-20130614|35751_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-14   52.7   0.1    3.2e-14   52.3   0.0    1.1  1  PF00179.21 Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   2.4e-18   3.2e-14       1     139 [.      10     150 ..      10     151 .. 0.88

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 2.4e-18
                  HHHHHHHHHHHS-TTCEEEEEEETTECCEEEEEE---TTSTTGGB-EEEEEE--TTTTT..S--EEEESS--SCTTB-.----B-HGGGSTTT--T.T--HHHHHHHHHHHH...HS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
   PF00179.21   1 rlqkelkelskkkpegikaevvedsnllewkvvikgpegtpYegglFklkikfpeeYPf..kPPkvkfvtkifHPnvd.etGeicldiLkeekWsp.altlesvLlsiqsll...aepnpesplnkeaakllkknreeykkkvkek 139
                  rl+ e+++l+++ p g+++ + +   l  w+++i+  ++++Y+ g+Fk+++++p++Y      Pk+ f+tk++ P v+ etGei l+    + W p  + +   L+ + +++   +   p+ p++  aa+ ++++++e+ kkv+++
  MMETSP0890-20130614|35751_1  10 RLTVEFRHLQENAPGGVYVIPNK---LRSWDGLIFV-RRGMYASGVFKFRVELPPNYNDynVWPKICFKTKVYSPMVNpETGEIDLKSAYPT-WDPtKHYVVMALTFVKKIFylkKGDVPQTPFHPVAAEAFESDPAEFLKKVSAC 150
                  78889999999999999998765...99********.99******************864367***********************888855.***66678888888877766645669*********************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 912.73
//
Query:       MMETSP0890-20130614|35763_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-10   38.3   0.5    1.2e-09   37.8   0.3    1.3  1  PF09733.4 VEFS-Box of polycomb protein


Domain annotation for each model (and alignments):
>> PF09733.4  VEFS-Box of polycomb protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.3   8.7e-14   1.2e-09      72     140 ..       2      67 ..       1      68 [. 0.95

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 8.7e-14
    PF09733.4  72 lmklWNlfvrkqrvvadghipwAceaFsrlhgqelvekssLlrnfrllliklwdhgllsartvdkaeti 140
                  +mklWN fv+ + + ad ++p+A  aF+  + + lv+   L+ +f+l+l +l+d++l++a+++  + ++
  MMETSP0890-20130614|35763_1   2 FMKLWNRFVHAHPISADRRVPVANLAFAIENAKALVD---LRHCFLLHLFHLYDNSLVNAEHIAACLAV 67 
                  8*********************************986...69**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       530  (0.0387654); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:01.13
# Mc/sec: 409.90
//
Query:       MMETSP0890-20130614|35768_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-38  130.5   0.3    2.7e-22   78.1   0.0    2.0  2  PF00153.22 Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   5.6e-18   7.7e-14      23      92 ..       1      67 [.       1      71 [. 0.91
   2 !   78.1   0.0   1.9e-26   2.7e-22       3      92 ..      80     170 ..      78     174 .. 0.95

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 5.6e-18
                 CHHHHHHHHHHH-SS--GCGS-.---HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22 23 ttPldvvKtrlqksaasassky.kgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92
                 ++Pl+++K  l      ++ +y  +i+ a kkiyke+Gi +lyrGllp+++ ++p+ +  f +yetlk++ 
  MMETSP0890-20130614|35768_1  1 VYPLETIKSVLT----VERARYgPSIIIAGKKIYKEHGISALYRGLLPTVIAMMPYVGSEFCAYETLKHFC 67
                 69**********....555555599*******************************************986 PP

  == domain 2    score: 78.1 bits;  conditional E-value: 1.9e-26
                  HHHHHHHH----HHHCCHHHCHHHHHHHHHHH.-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   3 lsvlksllaGaiAgaiaalvttPldvvKtrlq.ksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                  l++ ++ll+Ga+Agaia++ ++Pldvv+ rlq +   + + +y ++ld l  i  +eGi +ly+Gl+p++l +vp+++   v+ye++k+ll
  MMETSP0890-20130614|35768_1  80 LTTTETLLIGAVAGAIAQCTCHPLDVVRKRLQvQGLGERPVQYYNMLDGLAGIATSEGISALYKGLSPACLATVPSTGSSYVVYEFVKRLL 170
                  567889**************************888889999************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.73
# Mc/sec: 574.47
//
Query:       MMETSP0890-20130614|35767_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-34  115.5   0.1    2.3e-12   46.3   0.0    4.3  4  PF00153.22 Mitochondrial carrier protein
  ------ inclusion threshold ------
        6.2    6.4   6.7       0.68    9.5   1.4    1.8  2  PF12092.3  Protein of unknown function (DUF3568)


Domain annotation for each model (and alignments):
>> PF00153.22  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.1e-10   1.5e-06       5      35 ..     237     271 ..     233     335 .. 0.83
   2 !   15.3   0.0   1.6e-06     0.011      60      94 ..     379     413 ..     342     415 .. 0.89
   3 !   21.3   0.0     2e-08   0.00014       5      93 ..     422     505 ..     418     508 .. 0.89
   4 !   46.3   0.0   3.4e-16   2.3e-12       5      92 ..     517     601 ..     513     605 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.1e-10
                  HHHHHH----HHHCCHHHCHHHHHHHHHHH....- CS
   PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlq....k 35 
                   + + +a+a+A ++++l+++Pld++Ktrlq     
  MMETSP0890-20130614|35767_1 237 SWFNYAAAAAASVVSTLIMHPLDTIKTRLQsrvgL 271
                  445678************************44441 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.6e-06
                  -GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH-G CS
   PF00153.22  60 irglyrGllpnllrvvpaaaikfvtyetlkkllsk 94 
                  i++ly G++ n+ ++++ +a+++++ye++k +l k
  MMETSP0890-20130614|35767_1 379 ILSLYAGVSGNVAKEAVPSALYLGVYEAVKAILLK 413
                  899***************************99976 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 2e-08
                  HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH- CS
   PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkklls 93 
                  +  +l++G+++ ++++++ +P +  K  +q   ++ ++++++++++   i  +      +r +  +++r+vp  ai++ ++e lk ++ 
  MMETSP0890-20130614|35767_1 422 LGVYLISGGVGELFGSVLRAPAEATKSLVQ---SGLATNFNNACEI--IIASKASRDRVFRAWFGSVIRDVPMGAIQICIFEGLKLYIL 505
                  66789*************************...9999999999999..3556666799**************************98776 PP

  == domain 4    score: 46.3 bits;  conditional E-value: 3.4e-16
                  HHHHHH----HHHCCHHHCHHHHHHHHHHH-SS--GCGS----HHHHHHHHHH---GGGG---HHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00153.22   5 vlksllaGaiAgaiaalvttPldvvKtrlqksaasasskykgildalkkiykeeGirglyrGllpnllrvvpaaaikfvtyetlkkll 92 
                  + +++++Gai+g+i++lvttP+d++ tr+    + +++  ++++ ++k i +e G+++l++G+l + l  +pa +i ++ty +++++ 
  MMETSP0890-20130614|35767_1 517 LQAEAFIGAIGGFIGSLVTTPMDIATTRII---TADDQDTRTVFAVMKDIAQESGPQALFSGCLQRSLYWAPAIGIFLSTYCSIRQFA 601
                  667899************************...77788899****************************************9999876 PP

>> PF12092.3  Protein of unknown function (DUF3568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.88     6e+03      71     101 ..     197     226 ..     185     232 .. 0.64
   2 ?    9.5   1.4    0.0001      0.68      50     118 ..     320     391 ..     302     395 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.88
    PF12092.3  71 ksktinskdAeiegaeksdkdslkikleklt 101
                  ++   ++k+Aei   e ++k +++ +l+k  
  MMETSP0890-20130614|35767_1 197 QKAGFEKKKAEIMK-ELAEKRKFEAELKKRA 226
                  33333458888885.6677788888887765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0001
    PF12092.3  50 nlksvynAtlkaiqnsetfevksktins.kdAeiega..eksdkdslkiklekltknatkvtIkvGklGdek 118
                   ++++ +    +iq++++ e++s    + ++A++++     +d++++kik++k++k++  ++   G  G+ +
  MMETSP0890-20130614|35767_1 320 TFQEINTVASSTIQQENEEEISSSMAPTlTKARVNTKesFPDDEEHIKIKIKKKEKELDILSLYAGVSGNVA 391
                  4777888888999999999999998888899**9987444478999**********9999999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1085  (0.0793593); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.40s 00:00:01.48 Elapsed: 00:00:00.92
# Mc/sec: 1614.94
//
Query:       MMETSP0890-20130614|35776_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-22   80.4   0.0    1.5e-22   80.1   0.0    1.1  1  PF00685.22 Sulfotransferase domain
  ------ inclusion threshold ------
       0.09   13.5   0.0       0.15   12.8   0.0    1.4  1  PF13469.1  Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   2.2e-26   1.5e-22      78     217 ..      13     154 ..       8     187 .. 0.89

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 2.2e-26
                  CHCTSS.EEEE...CCCS.CCHHHTT-EEEEEE--HHHHHHHHHHHHHHCTCSTTT--.-HHHHHHHHH.HHHCCH-HHHHHHHHHH..TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT--.....HHHHHHHTCHHHHHC-CCCSS CS
   PF00685.22  78 ralesprllktHlplkllpkslldknlKiiylvRnpkdvavSryhfsrslkllkepet.pfeeffdlflegrvvcgsyfdhveewlk..lrkkgnvlflrYEdlkkdpakeikeiaeFlGip.....lekivkhlsfenmksnpvsnk 217
                   + ++prl k+H  ++++      k +++iy++R p+d+++S+y+f  +  ++  pe+ +feef ++  +g    g +++h+ +w+k  ++ ++++l++ +Edlkkd+ +ei +i +Fl        +++ v+ ++fe+m+++ ++ +
  MMETSP0890-20130614|35776_1  13 PQCAEPRLYKSHETWSTI-----AKGARYIYVIRHPADAFISFYNFLPAY-MHLSPESiTFEEFAQAIFAGLSHSGGIWSHFVDWIKaaQQFPDQILIVAFEDLKKDLTQEIARISHFLFPHdttkdIRRAVELTTFEAMSARSTQFD 154
                  67789***********99.....99*********************9654.445555557***************************99999***************************7668999***************9988765 PP

>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.1e-05      0.15     125     202 ..      30     120 ..       7     139 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
    PF13469.1 125 lfpd.rfvvllRdPlavlasllrlllasllrrspyalrlalrkleallrllllglalarlwlelne.................edlpadpeatler 202
                  +  + r++ ++R+P +++ s++ +l   ++ ++ ++  + +++++    +  l + ++  w ++ +                 edl  d  + ++r
  MMETSP0890-20130614|35776_1  30 IAKGaRYIYVIRHPADAFISFYNFL---PAYMHLSPESITFEEFAQA-IFAGLSH-SGGIWSHFVDwikaaqqfpdqilivafEDLKKDLTQEIAR 120
                  5667799**********99*88888...4444444433322222111.1111111.3333333333554454555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 786.41
//
Query:       MMETSP0890-20130614|35780_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 320.87
//
Query:       MMETSP0890-20130614|35779_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.5e-142  473.1   0.1     9e-142  472.8   0.0    1.0  1  PF01139.12 Uncharacterized protein family UPF0027


Domain annotation for each model (and alignments):
>> PF01139.12  Uncharacterized protein family UPF0027
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.8   0.0  6.6e-146    9e-142      18     420 .]      32     473 .]      16     473 .] 0.98

  Alignments for each domain:
  == domain 1    score: 472.8 bits;  conditional E-value: 6.6e-146
   PF01139.12  18 aleQlknvaslpgivk.vaimPDvHlGygapiGgviatk.....gvvsPgaVGvDIgCGmrllktnltaedleedklkellealeeavpvgvgskgkvelseealkevleegaekaveeglgeee............eadeekvsesakeraakqlGtlGgGNHFiEiqvveeifdeeaakalgldekgqvvlliHsGSRglGkqvaedylkeaekkakkak.iklpdrelaylpleseeaqdYlkamaaAanyAkaNRqliaervlealeevlee.a.klelelvvdvaHNivkkekh....keeellvhRKGAtraf.............egqpvliPgsmgtgSyilrGkenaeaeslgSaaHGAGRvmsRskakkklsgeelkealag.g.iveaekkklvldEaPeaYKdieeVvealeeaglvevvarlkpvlvvkg 420
                  al+Q++nva lpgiv  ++++PD+H+Gyg+ iG v+a++      +vsPg+VG+DI+CG+r+l+tnlt++++  + +++l ++l++++pvgvgs+g + +se++l+++le g++++++eg+++ e            +a+++kvs++ak+r+ +q+GtlG+GNH++Eiqvv+ei d+ +a a+g+d+ gq+v++iHsGSRglG+qva+d l  +e++++k   + ++dr+la+++l+s+e+qdYl+ maaAanyA++NR+ ++ ++++++++v+++ + +l+++ ++dv+HNi+k+e+h    k ++llvhRKGAtraf             +gqpvl++g+mgt Syil+G+++++a ++gS++HGAGR+ sR+k++++l  +++ ++l+  g  +++++ klv++EaPeaYKd+++Vv+++++ag++e+v +l+p++v+kg
  MMETSP0890-20130614|35779_1  32 ALKQIANVAALPGIVGaSIGLPDIHSGYGFAIGNVAAFDtsnpeAIVSPGGVGFDINCGVRVLRTNLTEKEV-GPLREQLAQSLFDHIPVGVGSRGVIPTSEANLDAALEMGMDWSLREGYSWAEdkerceeygrmlQANPAKVSRRAKKRGLPQMGTLGAGNHYAEIQVVDEIHDSFKAGAMGIDRVGQIVIMIHSGSRGLGHQVATDALLAMERAMEKDTsLIINDRQLACARLHSPEGQDYLASMAAAANYAWVNRSSMTFLARQTFAKVFNAtPdDLDMHVIYDVSHNIAKFEQHlvdnKLKTLLVHRKGATRAFpphhplipvdfqlTGQPVLVGGTMGTNSYILAGTDKGMAATFGSTCHGAGRASSRNKTRRTLAFQDVLNNLEAkGiAIRVASPKLVMEEAPEAYKDVNHVVDTCHQAGISEKVVKLRPIAVIKG 473
                  89*****************************************99***************************.889*********************************************99999******************************************************************************************99665527999*************************************************878**********************99999**************************************************************************************9899**********************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.41s 00:00:01.20 Elapsed: 00:00:00.77
# Mc/sec: 1472.05
//
Query:       MMETSP0890-20130614|35781_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-05   24.3   0.0    2.2e-05   24.0   0.0    1.1  1  PF02616.9  ScpA/B protein
      2e-05   23.5   0.0    2.9e-05   23.0   0.0    1.3  1  PF04824.11 Conserved region of Rad21 / Rec8 like protein
  ------ inclusion threshold ------
          1    9.5   8.2       0.21   11.7   1.1    2.3  3  PF12355.3  Down syndrome cell adhesion molecule C terminal


Domain annotation for each model (and alignments):
>> PF02616.9  ScpA/B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.8e-09   2.2e-05     188     240 ..     122     175 ..      91     177 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.8e-09
    PF02616.9 188 ekLkkkg.wvsfselvkdiskkdlVgaFlalLeLannqkveleQeeffgelqvq 240
                  ++L  k+  +s+  l ++ +k + Vg F+ lL+L +   ++l Q+++  +++++
  MMETSP0890-20130614|35781_1 122 DALTDKNqSISLNALTAEADKTTTVGIFVELLHLKSWDFIQLTQNKPRADITIS 175
                  345555559*******************************************97 PP

>> PF04824.11  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.3e-09   2.9e-05       3      52 ..     128     177 ..     126     180 .. 0.94

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.3e-09
                  HHHTT----------HHHH---HHHHHHHH------EESS----EEE--- CS
   PF04824.11   3 keklslsqlpagttRkeAArlFYelLvLkteqaIkvkQeePYgdIlikag 52 
                   ++ sl+ l+a  ++   +  F elL Lk+ + I+++Q++P  dI+i++ 
  MMETSP0890-20130614|35781_1 128 NQSISLNALTAEADKTTTVGIFVELLHLKSWDFIQLTQNKPRADITISPA 177
                  6899*******************************************986 PP

>> PF12355.3  Down syndrome cell adhesion molecule C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   4.6e-05      0.21      43      85 ..      13      57 ..       3      68 .. 0.75
   2 ?   -1.5   1.0      0.55   2.5e+03      65      81 ..      67      83 ..      57     104 .. 0.65
   3 ?    1.3   0.2     0.075   3.4e+02      65     118 ..      86     143 ..      74     147 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.6e-05
    PF12355.3 43 srgsvgrrsvgsarn.pvsgspe.pppppprnhdqsnssfndske 85
                 s   +gr  + s++n   +   e pppp p n d + s+ n   e
  MMETSP0890-20130614|35781_1 13 STPEIGRFNISSTQNqLDNYDDElPPPPIPLNEDNESSAANTPIE 57
                 45679**********5444455537777799***99999887665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.55
    PF12355.3 65 pppppprnhdqsnssfn 81
                 pppp     d  +ss+ 
  MMETSP0890-20130614|35781_1 67 PPPPLAFGDDSPKSSYA 83
                 45555555666667765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.075
    PF12355.3  65 pppppprnh.dqsnss...fndskesneiseaecdrdqlvrrnygvvkrspqpkdqrt 118
                      pp n+ d + ss   ++     n +  a+  rd l+++n  ++  +  +  ++t
  MMETSP0890-20130614|35781_1  86 SQDIPPENQeDDAVSSttpIEREWHPNTVKVAQLLRDALTDKNQSISLNALTAEADKT 143
                  4444444441333333111333445789999999999999999888766655544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 640.17
//
Query:       MMETSP0890-20130614|35788_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   33.4   0.0    2.7e-08   32.8   0.0    1.3  1  PF00493.18 MCM2/3/5 family
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.014   15.0   0.1    1.1  1  PF03747.9  ADP-ribosylglycohydrolase
      0.086   11.8   0.3       0.12   11.4   0.2    1.1  1  PF11279.3  Protein of unknown function (DUF3080)


Domain annotation for each model (and alignments):
>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0     6e-12   2.7e-08     287     330 ..       2      45 ..       1      57 [. 0.95

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 6e-12
   PF00493.18 287 ksipitvrqleslirlseAlArlrlsevvteedveeairlvkes 330
                  +++pit+r leslirl++A+A+++ se ++ +d++ a+++++++
  MMETSP0890-20130614|35788_1   2 RTLPITARCLESLIRLATAHAKIHHSENISISDCDFAFNILSTT 45 
                  579************************************99876 PP

>> PF03747.9  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   3.1e-06     0.014     138     246 ..      10     120 ..       2     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.1e-06
                  CTSTHCCHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHTT--CCHHHHCH..HHHHCCT-HHHHHHHHHHHG---HCH..........HHHH-----BHHHHHHHHHHHHHH CS
    PF03747.9 138 lagdpeellelareaarlTHgdpravaaavayaaliaallrgkslsealdaakeqlataeadeelseeleaaralaesdr.....vdaeeelgrlgsggyvvealpaalyallk 246
                  +   +e l++la ++a++ H+   ++  ++++ +++++ + g+s+ +   +a++ ++ ++a+e++  e+++++  +++ +     + a+++  + + g+  v++l +al a l+
  MMETSP0890-20130614|35788_1  10 C---LESLIRLATAHAKIHHSENISISDCDFAFNILSTTIFGDSDTKEAITAENNNDIEQAREQIDIEMNDVVVHEPRREniisqTLAQLQQADVSDGIVSVNNLLVALNATLS 120
                  3...699********************************99999999999999********************99999999988866677777777777888888777777766 PP

>> PF11279.3  Protein of unknown function (DUF3080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   2.5e-05      0.12      96     189 ..      51     144 ..      44     148 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.5e-05
    PF11279.3  96 eedeelkaeLkealsqKreqlpaalwnalltseelekqlslssqllples.eaelselldalsqlnaikeqllaqeseinldeleealerleksr 189
                  +++e+++ae ++ ++q req+ ++++ ++++++  e+  s++   l++ + ++++  +++ l +lna+ +  +++  e ++ e+ ++l++l++++
  MMETSP0890-20130614|35788_1  51 DTKEAITAENNNDIEQAREQIDIEMNDVVVHEPRRENIISQTLAQLQQADvSDGIVSVNNLLVALNATLSD-SPNAIEFSSAEVDSVLKKLADQN 144
                  566777788888899*************************9999999999889999999999999988766.99999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       807  (0.0590257); expected 273.4 (0.02)
Passed bias filter:                      543  (0.0397162); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 511.65
//
Query:       MMETSP0890-20130614|35801_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    9.5  16.9        1.3    9.3   2.3    2.1  2  PF11740.3 Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> PF11740.3  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.0   0.00096        13      64     113 ..      11      60 ..       9      63 .. 0.93
   2 ?    9.3   2.3   9.7e-05       1.3      63     103 ..     126     166 ..     114     167 .] 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00096
    PF11740.3  64 sealaelvaalwqaaqeeaeerlaaaraeaeaeraaleaelaeaaarvea 113
                  ++++++++ a wq+a + ae+   aa++ ++ e+ ale  l+e +++v a
  MMETSP0890-20130614|35801_1  11 QQEAEAAAYATWQEAFKDAEAIFTAAQSWWKDEVTALELDLDEFSNAVSA 60 
                  689999*************************************9998876 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 9.7e-05
    PF11740.3  63 lsealaelvaalwqaaqeeaeerlaaaraeaeaeraaleae 103
                  ++  l +++a++w ++++ a+er ++++++a ++ ++++++
  MMETSP0890-20130614|35801_1 126 VAGLLHRFAATAWRRMVARARERKQEQEEAATRKTREQQRR 166
                  556788999*****************999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1139  (0.083309); expected 273.4 (0.02)
Passed bias filter:                      649  (0.0474693); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.95
# Mc/sec: 421.25
//
Query:       MMETSP0890-20130614|35804_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   12.8   0.2       0.18   11.6   0.0    1.7  2  PF08417.7 Pheophorbide a oxygenase


Domain annotation for each model (and alignments):
>> PF08417.7  Pheophorbide a oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.18      60      83 ..       2      25 ..       1      34 [. 0.88
   2 ?   -2.6   0.0      0.36   4.9e+03      37      56 ..     143     162 ..     126     166 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
    PF08417.7 60 ehiaankvldeDlillhgqerilq 83
                 +h+a++k+l++D ++lh+ +r l+
  MMETSP0890-20130614|35804_1  2 THLANHKILEDDNVFLHYANRDLT 25
                 69****************999875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.36
    PF08417.7  37 sRllvrfplnfskallklvP 56 
                  + +l+ f+l ++ ++  ++P
  MMETSP0890-20130614|35804_1 143 CLILALFSLALNTTFRTIIP 162
                  55777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:01.08
# Mc/sec: 421.58
//
Query:       MMETSP0890-20130614|35802_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-05   23.3   0.3       0.02   14.4   0.0    2.4  2  PF14214.1 Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> PF14214.1  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-06      0.02     128     177 ..      10      59 ..       4      65 .. 0.90
   2 !    6.6   0.1   0.00039       5.3     165     183 ..      75      93 ..      69      94 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.5e-06
    PF14214.1 128 gqeaedrPdivarvFkmkldelmkdllkkkvfgkveayvyrvefqkRGlp 177
                   q+  dr di a  F+ kl+++++ l +  +f ++   + +v f + G  
  MMETSP0890-20130614|35802_1  10 VQDYWDRCDILATAFHGKLEAFIARLRSGTIFRNLGRPIETVTFDEEGYK 59 
                  577789***************************************99975 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00039
    PF14214.1 165 yvyrvefqkRGlpHvHiLl 183
                  ++y +e+q R l+H H+++
  MMETSP0890-20130614|35802_1  75 IIYSIEYQGRTLVHFHLVY 93 
                  689*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.62
# Mc/sec: 2311.32
//
Query:       MMETSP0890-20130614|35827_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    8.8   5.4        5.3    6.4   1.7    2.2  2  PF04156.9 IncA protein


Domain annotation for each model (and alignments):
>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.004        54      82     116 ..      90     124 ..      68     170 .. 0.70
   2 ?    6.4   1.7   0.00039       5.3     160     190 ..     212     242 ..     190     276 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.004
    PF04156.9  82 elsesesqlseleeeleqleerlaeleseledlee 116
                  e+   + ql++ +ee++   +++  le++l ++  
  MMETSP0890-20130614|35827_1  90 EVRLFDVQLNQTDEEIQVQNSHQTHLERHLAQIAA 124
                  44445556666666665555555555555555544 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00039
    PF04156.9 160 vqelrselerlqedlqrlqeklaelqrlleq 190
                  vqe+r+++e++++  +rl++  ae+q++ e+
  MMETSP0890-20130614|35827_1 212 VQEERERIEAEKRTNDRLAQLDAEKQAEEER 242
                  3333333333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      467  (0.0341574); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.64
# Mc/sec: 1220.64
//
Query:       MMETSP0890-20130614|35836_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 232.26
//
Query:       MMETSP0890-20130614|35834_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.35s 00:00:01.04 Elapsed: 00:00:01.02
# Mc/sec: 897.46
//
Query:       MMETSP0890-20130614|35845_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       589  (0.0430807); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.74
# Mc/sec: 605.57
//
Query:       MMETSP0890-20130614|35849_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.74
# Mc/sec: 809.58
//
Query:       MMETSP0890-20130614|35853_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.64
# Mc/sec: 1404.12
//
Query:       MMETSP0890-20130614|35858_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.61
# Mc/sec: 1115.68
//
Query:       MMETSP0890-20130614|35862_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-15   57.3   4.9      4e-15   56.2   3.4    1.5  1  PF12697.2  Alpha/beta hydrolase family
    1.5e-13   50.6   3.0    2.1e-12   46.8   2.1    2.3  1  PF12695.2  Alpha/beta hydrolase family
    3.9e-07   29.7   1.2    2.8e-06   26.9   0.9    2.1  1  PF00561.15 alpha/beta hydrolase fold
    1.5e-06   27.5   0.1    6.8e-05   22.0   0.0    2.2  2  PF00326.16 Prolyl oligopeptidase family
    0.00033   20.0   0.2     0.0006   19.2   0.1    1.7  1  PF02129.13 X-Pro dipeptidyl-peptidase (S15 family)
     0.0059   16.3   0.0      0.015   15.0   0.0    1.6  1  PF12146.3  Putative lysophospholipase
      0.009   15.3   0.1      0.013   14.8   0.1    1.3  1  PF00756.15 Putative esterase
  ------ inclusion threshold ------
       0.16   11.5   0.0        8.6    5.9   0.0    2.3  2  PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
       0.31   10.0   2.0       0.23   10.4   0.2    1.6  2  PF03583.9  Secretory lipase


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   3.4   2.6e-18     4e-15       1     215 [.      44     336 ..      44     346 .. 0.57

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.6e-18
                  EEE------------H.HHHHHTTTSEEEEE-----------S...S--H.HHHHHHHHHHHHH--.....--EEEE--------HHHHHH----...EEEEEEE------STT.....................................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHH............................HH..........--GGGG....GG........------HHHHTT--S-EEEEE-----HHH.HHHHHHHHHHSTT...............EEEEE---SSS CS
    PF12697.2   1 vvllHGlggsaeswrp.laeaLaagyrvvapDlpGhGrSdrppdydpdtl.edlaadlaalldalgl....rpvvlvGHSlGgavalaaaarrpd..lvrglvlidppgplpas.....................................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealv............................ra..........daaalaellraa........lldadlrealarldvPvlviageaDrvvp.peearrlaealpg...............arvvvlpgagH 215
                  v+  HG+ +   +  p +a++L  g+ v a+D  G G Sd+       tl ++ aad+aa+ ++l +    +++ l+G S+Gg+++++aaar+ d   v+++v+ d+p+ + ++                                                                                              +                            +a           a+a ++ +ra+          d  + +a+  ld+P l+ia+e+D ++p  ++a +l e+  +               a++v ++ +gH
  MMETSP0890-20130614|35862_1  44 VLYSHGNASCRLEALPhVAPLLILGISVAAFDASGSGHSDGEY----VTLgHREAADVAAVGRHLIAtgraTKIALFGRSMGGVASILAAARHADfgGVAKCVVADSPFASLNGlvddlarntaytafrapkpadlekmhkpidanfvananglaqastrsprspssD----------------------------------------IkaslpsnrtcgiggndssswlnsfpnmtTAlnarsslaeaAARAAIDSVRAEvtrragfeVDDVNALHAIDCLDCPLLLIAAENDTLIPpRANAGQLLERYFQrrnvvtkrslkqrleAQLVLVK-GGH 336
                  57789*999998888835556669****************954....3333566666666666655555559********************9999999999877777755454688888888777666666666666555555555443333333222222221110........................................022222222222222222222222233221133222222224444444444448887854333333345555569***************855554444433321222222222222225666665.556 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   2.1   1.4e-15   2.1e-12       1     125 [.      43     307 ..      43     337 .. 0.64

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 1.4e-15
    PF12695.2   1 lvvlvhGaggdssayeplaealakrgfavvavdlpghgasegaa......aakrvl...aadll.....dleriilvGhSlGGgvalelag................................................rddrvkglvllapfpdgedlakltl.......................................................................................................pvllihGtrDgvvppee.aeklak 125
                  lv+++hG+++ + +  p +  l   g++v+a+d +g+g s+g+       +a++v+   +   +     ++ +i+l+G+S+GG +++++a+                                                                        +                                                                                                       p+lli +++D+++pp + a +l++
  MMETSP0890-20130614|35862_1  43 LVLYSHGNASCRLEALPHVAPLLILGISVAAFDASGSGHSDGEYvtlghrEAADVAavgR---HliatgRATKIALFGRSMGGVASILAAArhadfggvakcvvadspfaslnglvddlarntaytafrapkpadlekmH-----------------------KpidanfvananglaqastrsprspssdikaslpsnrtcgiggndssswlnsfpnmttalnarsslaeaaaraaidsvraevtrragfevddvnalhaidcldcPLLLIAAENDTLIPPRAnAGQLLE 307
                  599*************************************66666666664444442221...134566889*******************5544444444444444444444444444444444444444444444440.......................26666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666777888*************77650444433 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.9   1.8e-09   2.8e-06       4     193 ..      72     300 ..      70     340 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.8e-09
                  EEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGG...GEEEEEEESB--......................................HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHH.....................................CHHHHHHCHCCCCCHHH..HHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT..-TSSEEEEECCTTSCCHHCH CS
   PF00561.15   4 iglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypd...rvkamvllgtva......................................vlsdglssdvlnrgstltlladnvagrlskgikplqgdasvq.....................................aqsllrpqvtdflkrfd..ansyaregetraldgkllaalgrdlvwdvtetlkt..ilvptlvisgtdDplvpyka 193
                   ++D  G+g+S+     +l h   +d+a+  + +++    +k++l+G SmGG  +  +aa++ d     k +v+++++a                                                                               +                                      ++++ p  t  l++++  a++ ar ++ +++ +  + +++ + v+dv +       ++p+l+i +++D l+p+ a
  MMETSP0890-20130614|35862_1  72 AAFDASGSGHSDG-EYVTLGHREAADVAAVGRHLIATGRATKIALFGRSMGGVASILAAARHADfggVAKCVVADSPFAslnglvddlarntaytafrapkpadlekmhkpidanfvA----------------------------------------NanglaqastrsprspssdikaslpsnrtcgiggndssSWLNSFPNMTTALNARSslAEAAAR-AAIDSVRAEVT-RRAGFEVDDVNALHAIdcLDCPLLLIAAENDTLIPPRA 300
                  589*********5.39**************************************************5555555788876666666666666666666666665555555555444442........................................344444333333344444444444444444444444446666666677777777754333333.66777777777.88999999988888778899999999999999999976 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.5e-08   6.8e-05      12     107 ..      66     157 ..      57     196 .. 0.75
   2 ?    3.4   0.0     0.022        33     132     161 ..     269     299 ..     235     357 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.5e-08
                  H----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE--------HHHHHHHH-GG...G---EEEE-----TTTGGGS CS
   PF00326.16  12 drGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSyGGylvgaalnqrpd...lFkaavaqvgvvdwltymsd 107
                   +G+ v++ +  Gsg+   +     +  lg +e++D++a+ ++l+++g   + ++a++G S GG+ +  a++++ d   + k++va ++++ +     d
  MMETSP0890-20130614|35862_1  66 ILGISVAAFDASGSGHSDGE-----YVTLGHREAADVAAVGRHLIATG--RATKIALFGRSMGGVASILAAARHADfggVAKCVVADSPFASLNGLVDD 157
                  56777888888888844444.....445999***************95..6789************999999777622258999*****9998877666 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.022
                  HHHH-GGG---.----EEEEEETT-SSS-TH CS
   PF00326.16 132 lspyspadnvk.aypplllihGeeDdrvppa 161
                  +  ++ ++++   ++pllli +e+D+ +pp 
  MMETSP0890-20130614|35862_1 269 VDDVNALHAIDcLDCPLLLIAAENDTLIPPR 299
                  44444455544699************99984 PP

>> PF02129.13  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.9e-07    0.0006      57     136 ..      68     149 ..      36     338 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.9e-07
                  --EEEEEE----TT------TTTCCHHHHHHHHHHHHHHCTTBE-EEEE---TT---HHHHHTTS--T...TB-EBEEBSB-S CS
   PF02129.13  57 GYavVvvdvrGtgaSeGeftvgsedevedgadvidWlakqpwsnGkVGmtGiSYdGttqlaaaatgvp...alkaivpesais 136
                  G  v   d+ G+g+S+Ge+++ + +e++d+a+v + l +   +  k++ +G S +G+++++aaa++ +     k++v+ s+ +
  MMETSP0890-20130614|35862_1  68 GISVAAFDASGSGHSDGEYVTLGHREAADVAAVGRHLIATGRA-TKIALFGRSMGGVASILAAARHADfggVAKCVVADSPFA 149
                  66677889*************************9999987544.49******************6543221345566555544 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.7e-06     0.015      12      64 ..      36      89 ..      26     100 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.7e-06
    PF12146.3 12 eep.pkaavvlvhglaEhsgrYqelaedLaaqGyavyayDhrGhGksegerghv 64
                 +++ +k +v+++hg a         +  L   G++v+a+D  G G+s+ge   +
  MMETSP0890-20130614|35862_1 36 KDSlNKPLVLYSHGNASCRLEALPHVAPLLILGISVAAFDASGSGHSDGEYVTL 89
                 55556778888888876666544445567779****************976554 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   8.6e-06     0.013     116     153 ..     112     152 ..      86     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.6e-06
                  -EEEE--THHHHHHHHHHHH-TT...T-SEEEEES----TT CS
   PF00756.15 116 gravaGqSmGGlgALilalkhpd...rFgsvssfSpivnps 153
                  + a++G SmGG++++++a++h d     ++v + Sp++++ 
  MMETSP0890-20130614|35862_1 112 KIALFGRSMGGVASILAAARHADfggVAKCVVADSPFASLN 152
                  379****************9865111556777777776655 PP

>> PF08840.6  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0057       8.6      22      56 ..     111     148 ..     104     199 .. 0.82
   2 ?    3.4   0.0     0.031        48     112     141 ..     279     308 ..     239     352 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0057
                  -----B------HHHHHHHHHSS...S---EEEE---- CS
    PF08840.6  22 dkigllGiSkGgelalllasflk...kisavvlingsa 56 
                   ki+l G+S Gg   +l a+++     +  +v+   + 
  MMETSP0890-20130614|35862_1 111 TKIALFGRSMGGVASILAAARHAdfgGVAKCVVADSPF 148
                  69****************99987566666666655554 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.031
                  GG----EEEEE----SSS-HHHHHHHHHHH CS
    PF08840.6 112 erakgpillvvgedDknwpSkesaekaser 141
                  +  ++p+ll+++e+D ++p    a ++ er
  MMETSP0890-20130614|35862_1 279 DCLDCPLLLIAAENDTLIPPRANAGQLLER 308
                  5569**************999888777666 PP

>> PF03583.9  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00015      0.23      56      94 ..      98     134 ..      56     142 .. 0.71
   2 ?   -4.3   0.1       4.6     7e+03      47      59 ..     249     261 ..     245     267 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00015
    PF03583.9  56 rAalkskkvsgitsdakvalwGYsgGslAsawAaelqpe 94 
                   A+ +    +g   ++k+al+G s G++As  Aa+ +++
  MMETSP0890-20130614|35862_1  98 AAVGRHLIATG--RATKIALFGRSMGGVASILAAARHAD 134
                  55554444444..789*****************987765 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 4.6
    PF03583.9  47 sgkavLdsirAal 59 
                   ++a +ds+rA  
  MMETSP0890-20130614|35862_1 249 AARAAIDSVRAEV 261
                  5689999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.39s 00:00:01.18 Elapsed: 00:00:00.72
# Mc/sec: 1454.46
//
Query:       MMETSP0890-20130614|35865_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   60.6   0.0    1.5e-16   60.3   0.0    1.1  1  PF00884.18 Sulfatase


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.1e-20   1.5e-16     209     379 .]       5     227 ..       2     227 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.1e-20
                  HHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG....HHH-TT----HHHHHHCCBEEEEEEE----TT..EE-S-EEGGGHHHHHHHH---.....--TTST-----THHHH----........................................................S.TT..CCEE.E.EEEECTB.CCCCCTS.CCCSCCCEEETTT-TCC-CC CS
   PF00884.18 209 leaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee....gngplrggkgvnayeggtrvPllvwwpggkap.rvseelvshvDlaptildlagilpkvegpkdrlldgksllptlegka........................................................qaddlkavrl.l.nsraivkagweavnldpadasgcsydltaDpgelkn 379
                  ++ ++++ + +Dd++  +l+ L     l  T++++ SD+g +  +    +n+plrg kg    egg+r+ +++  +g ++p +++e + s++D++pt+ld+ ++         ++ dg+s +  l+ k+                                                          ++l  +   +    a + + ++  n +  +++++++d++ Dp e++n
  MMETSP0890-20130614|35865_1   5 RALFAAMTKATDDMVRTLLKHL----DLTTTIFCYASDNGGASLPpnagSNYPLRGFKG-YLFEGGIRTHAFITASGLIPPsQQYESIFSVLDWIPTLLDAIDA-----TTSSTTFDGVSHWLSLSRKKkvqerrahllvnadafdcnapelvvqllmsndqeavpsdwiptgaiiinetlkfirN-ARLLPIIPlPtTDLAYYNSTDTFFNWTLLPPQDFLFDIESDPTESHN 227
                  6778899999************....**************999899*************.********************************************.....5778999****999999999888888888888888887777777777777776666666666666666666555532.22222222344555555555555555555555555999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.60
# Mc/sec: 1222.14
//
Query:       MMETSP0890-20130614|35868_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.69
# Mc/sec: 576.51
//
Query:       MMETSP0890-20130614|35869_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0037   15.8   0.0     0.0053   15.3   0.0    1.2  1  PF05914.7 RIB43A


Domain annotation for each model (and alignments):
>> PF05914.7  RIB43A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.9e-07    0.0053     283     365 ..      54     136 ..      36     140 .. 0.97

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.9e-07
    PF05914.7 283 eairktqeqQleekerrreeekerekewerqaielaraavllerqeerlrkelrkqlasanqqlakeqkaqrkylnkelYtNa 365
                  ++irktq  Q+ ++ ++++ +++ +++ +    +  r+  +  r ++r   e+ ++l++  ++l  e+  ++   ++ +Y N+
  MMETSP0890-20130614|35869_1  54 NKIRKTQSSQVPKNGEKKKSANNPNQKLSLSLANEVRTSRARARASSRALLERVNELDHLLENLTGEKPGRKLPEDEIIYSNN 136
                  58*******************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       667  (0.0487858); expected 273.4 (0.02)
Passed bias filter:                      455  (0.0332797); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.70
# Mc/sec: 575.13
//
Query:       MMETSP0890-20130614|35895_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        96  (0.00702165); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.42s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 201.43
//
Query:       MMETSP0890-20130614|35901_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   14.5   0.0      0.014   14.2   0.0    1.2  1  PF10128.4 Glucose-6-phosphate dehydrogenase subunit
      0.028   14.4   3.0       0.14   12.1   0.1    2.5  2  PF09452.5 ESCRT-I subunit Mvb12
       0.19   11.8   2.1       0.49   10.5   1.4    1.7  2  PF08278.6 DNA primase DnaG DnaB-binding


Domain annotation for each model (and alignments):
>> PF10128.4  Glucose-6-phosphate dehydrogenase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.1e-06     0.014      71     117 ..       3      49 ..       1      59 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.1e-06
    PF10128.4  71 dlPvvvWWpgslapenplldeLgaladrlItDsaaledpeaalerla 117
                  +l  ++ W  +  +e+p+ + L + a+r+I D+++ +d   ++e+ +
  MMETSP0890-20130614|35901_1   3 ELEKFAHWYRTEYNEEPSRETLEHAAKRIIADTSSQQDAVTRIEEEE 49 
                  678899999999**********************9999998888755 PP

>> PF09452.5  ESCRT-I subunit Mvb12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.027   1.2e+02      62      75 ..       5      18 ..       1      30 [. 0.76
   2 ?   12.1   0.1   3.2e-05      0.14      58      86 ..      67      95 ..      17     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.027
                 HHHHHHHHHHS--X CS
    PF09452.5 62 kefeqWYeekYlsk 75
                 ++f +WY+ +Y  +
  MMETSP0890-20130614|35901_1  5 EKFAHWYRTEYNEE 18
                 79*******99655 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.2e-05
                 HTHHHHHHHHHHHHS--XXXXXXXXXXXX CS
    PF09452.5 58 desgkefeqWYeekYlskkPpGllessvL 86
                  + +++f  WY+ekY s+ Pp l+  + L
  MMETSP0890-20130614|35901_1 67 SQAEQDFILWYREKYGSEPPPKLIARAAL 95
                 46788999**************9988665 PP

>> PF08278.6  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   0.00011      0.49      58     120 ..      15      71 ..       7      77 .. 0.84
   2 ?   -2.1   0.0      0.83   3.8e+03      88     119 ..      92     123 ..      83     127 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
    PF08278.6  58 lrgtpeeellakLatwehlikdeedieqefddalarLqeqllerrieeLkaksrrsgLtdeEk 120
                  + + p++e+l+  a+  ++i     ++   +da++r++e+  e+ + + ++k+ +s+L+++E+
  MMETSP0890-20130614|35901_1  15 YNEEPSRETLEHAAK--RII----ADTSSQQDAVTRIEEEEDEQNLSKYQSKPLSSSLSQAEQ 71 
                  667888888888887..566....4555668******************************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.83
    PF08278.6  88 ddalarLqeqllerrieeLkaksrrsgLtdeE 119
                  + al+ L + +++ +i + k    + g ++eE
  MMETSP0890-20130614|35901_1  92 RAALTFLPDNHPQDQISQPKPLHHTLGISSEE 123
                  55677777777777776655555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       939  (0.0686805); expected 273.4 (0.02)
Passed bias filter:                      715  (0.0522967); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.44s 00:00:00.92 Elapsed: 00:00:00.99
# Mc/sec: 317.09
//
Query:       MMETSP0890-20130614|35898_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.7   0.2    1.6e-15   57.2   0.0    1.3  2  PF01182.15 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase


Domain annotation for each model (and alignments):
>> PF01182.15  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.2e-19   1.6e-15      77     198 ..       5     124 ..       2     125 .. 0.84
   2 ?   -4.1   0.0      0.73   9.9e+03      49      60 ..     139     150 ..     135     153 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 1.2e-19
                  HHTGGG-EE-CCCC-........HHHHHHHHHHHHHCCHTSS.......-SEEEE-------BTTB-TT-CCHHH.SS-SEEEE-..STTSS.EEEE-HHHHTTSSEEEEEE---CCHHHHHHHH CS
   PF01182.15  77 eaLlskvkipeanvhrmpaesddpeeaaaayeeelrallgaee...vpvfDlvlLGmGeDGHtASLFPgspelleekdrlvvavndspkpppeRitltlpalnsarevvflvaGeeKaealeeal 198
                  ea++++  ipe+nvh++p + dd+++ a++ye+ l ++ + ++   +p++D++lLG G+DGH   +FP+s +++   ++ +  +   p p ++ i +++ ++++a+  v+ +aG+++ae++ +al
  MMETSP0890-20130614|35898_1   5 EAFTTDKGIPEENVHKVP-QGDDLNAIAKEYENLLTSHESIDHssaLPSVDVILLGTGDDGHCGCIFPNSLQVK---QTGLGKII-LPIPDKNVIAVSIDFMSAAKVAVISAAGAGRAEMVSKAL 124
                  566677779********9.5899************99987766999999********************98844...33333333.35666678****************************998 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.73
                  -GGGEEEEESEE CS
   PF01182.15  49 dwsrvhvflgDE 60 
                  d ++ +++++DE
  MMETSP0890-20130614|35898_1 139 DAKEETIWMVDE 150
                  556667899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 602.61
//
Query:       MMETSP0890-20130614|35910_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-11   41.3   0.0    1.4e-10   40.7   0.0    1.3  1  PF00534.15 Glycosyl transferases group 1
    3.9e-08   33.4   0.1    6.4e-08   32.7   0.0    1.3  1  PF13692.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.1e-14   1.4e-10      69     162 ..     149     241 ..     104     248 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.1e-14
                  ---EEE-----HHH...HHHHHTTECEEEE--SS.B---HHHHHHHH----EEEE-TTBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHH CS
   PF00534.15  69 lelsdnvifvgevpredleelyrnadifvlpsrs.EgfGivllEAmaaglpviasnvggpaeivkdgvtGllvkpkdaealaeaiekllkdeelr 162
                  +e +d+vi++g++p+++l  lyr+++ifv+p    E+f +++ E m+ g+++i++  g +  i + g   ++v p+d+ al+++   ll+++e+ 
  MMETSP0890-20130614|35910_1 149 AEKDDRVILTGMLPPKNLALLYRRCSIFVFPCSVpEAFSLAVWECMSHGVVPIVYGLGALQNIHTVGA--VVVSPGDEIALVKETSALLSQPEKL 241
                  57889*******************************************************99999999..9******************999765 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   9.4e-12   6.4e-08      15     133 ..     105     235 ..      97     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 9.4e-12
    PF13692.1  15 kdleelleealprlreklp...dvelviiGk...gpd......elarllepnveflgfv.e.elaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeeegvgglv..addpeelaealvrll 133
                  ++le+ll+  l+ l+++ p   d++l ++ +   + d      ++a+   ++v+++g + +  la l++++++++ p++  e+++l + e ++ G+  +++  g  +l+  + vg++v  ++d+ +l++   +ll
  MMETSP0890-20130614|35910_1 105 RGLETLLR-HLDVLQAACPkcaDFRLFVCHRqtgYHDlplpfvRIAEK-DDRVILTGMLpPkNLALLYRRCSIFVFPCSVPEAFSLAVWECMSHGVVPIVYGLG--ALQNIHTVGAVVvsPGDEIALVKETSALL 235
                  67788887.677777777744467777777777744454544446665.88********6369**************************************985..4444445554333699*999999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.80
# Mc/sec: 892.64
//
Query:       MMETSP0890-20130614|35913_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 304.62
//
Query:       MMETSP0890-20130614|35916_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-38  128.4   0.0    1.2e-37  128.1   0.0    1.1  1  PF00692.14 dUTPase
  ------ inclusion threshold ------
      0.012   13.9   0.0      0.015   13.5   0.0    1.2  1  PF06559.6  2'-deoxycytidine 5'-triphosphate deaminase (DCD)


Domain annotation for each model (and alignments):
>> PF00692.14  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   1.7e-41   1.2e-37       3     129 .]      12     140 ..      10     140 .. 0.96

  Alignments for each domain:
  == domain 1    score: 128.1 bits;  conditional E-value: 1.7e-41
                  S-EEB-S-TT----EEE-SSSEEEETTEEEEEE--EEEE---TEEEEEE-----CCCH-EE--.--BETT-----EEEEEE-SSS-EEE-TT-EEEEEEEEEBEE.GEEEEESSTTTEE--------SE CS
   PF00692.14   3 aeiierkrsedAgyDLsaakdftlkpgetvlvptdlsislpkgtaglilgrsslaakglivlp.giidsdyrGeikvvlfnlgkkdvtikkgdriaQLillpvvh.aelepveelertergesgfgssg 129
                  a ++ ++++ +Ag+DL aa+  t++p+++ lv+tdl i+ p +++++i++rs+la+k +i+++ g++d+dyrG+++v+lfn++++++ ++ gdriaQLil++v+  + +++v el +t rg++gfgs+g
  MMETSP0890-20130614|35916_1  12 AILPVKGSELAAGFDLAAAETQTVPPHGKALVKTDLAIATPTDCYARIAPRSGLAWKKFIDVGaGVVDADYRGNVGVILFNHSDEPFLVSPGDRIAQLILEKVHLdSTVKEVAELPSTSRGSGGFGSTG 140
                  5677889999******************************************************************************************98777899*******************97 PP

>> PF06559.6  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.2e-06     0.015     292     341 ..      69     118 ..      43     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-06
    PF06559.6 292 GffdPGfGaeeaggagsravlevrshevPfilehGqivgrlvyeklaerp 341
                   f d G G+ +a  +g  +v+     + Pf++  G  +++l++ek+   +
  MMETSP0890-20130614|35916_1  69 KFIDVGAGVVDADYRGNVGVILFNHSDEPFLVSPGDRIAQLILEKVHLDS 118
                  699*****************************************987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.43s 00:00:00.88 Elapsed: 00:00:01.03
# Mc/sec: 432.74
//
Query:       MMETSP0890-20130614|35924_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.99    9.1  12.1        2.4    7.9   1.1    3.3  3  PF07765.7  KIP1-like protein
        1.6    8.6   9.7       0.47   10.4   2.8    2.0  2  PF06029.6  AlkA N-terminal domain


Domain annotation for each model (and alignments):
>> PF07765.7  KIP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.014        96      34      49 ..      35      50 ..      11      56 .. 0.77
   2 ?    4.9   0.3    0.0031        21      23      48 ..      59      83 ..      54      93 .. 0.79
   3 ?    7.9   1.1   0.00036       2.4       8      47 ..      95     132 ..      90     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.014
    PF07765.7 34 ieeeadsfakrAemyy 49
                 ++eead   +rAe+ +
  MMETSP0890-20130614|35924_1 35 VKEEADRQERRAEVEH 50
                 689**********975 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0031
    PF07765.7 23 ldekvkemlklieeeadsfakrAemy 48
                  ++kv++++   eeead   +rAe+ 
  MMETSP0890-20130614|35924_1 59 TEKKVRAVIA-AEEEADRQKQRAELE 83
                 5777877775.699*********985 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00036
    PF07765.7   8 issknskWLeenLeeldekvkemlklieeeadsfakrAem 47 
                  i +k+ k Lee ++e++++  e+    +eead   +rAe+
  MMETSP0890-20130614|35924_1  95 IATKEEKELEERMQEMERQRAEIA--AKEEADRQQRRAEL 132
                  6789999***********999986..589*********97 PP

>> PF06029.6  AlkA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.8   6.9e-05      0.47      22      95 ..       7      82 ..       4      94 .. 0.83
   2 ?    2.2   0.4     0.023   1.5e+02      24      70 ..      90     139 ..      79     152 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.9e-05
    PF06029.6 22 ravegvewvdensygRtlrldkvkGlvevrhepeksrlkvtislsdlralqeliarvrrllDL..dadpeaIeaaL 95
                  ave+ e +++++ +R+ ++d+v + ++v++e++++  +++++ ++++a ++  ++vr++     +ad ++  a+L
  MMETSP0890-20130614|35924_1  7 AAVEHTEIIKKQETERVKKVDAVCAQIAVKEEADRQERRAEVEHAEITAKEKTEKKVRAVIAAeeEADRQKQRAEL 82
                 4899******************************************************987541145555555555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.023
    PF06029.6  24 vegvewvdens...ygRtlrldkvkGlvevrhepeksrlkvtislsdlra 70 
                  ve  e  ++++    +R+ +++++++++++++e+++++ +++++ ++++a
  MMETSP0890-20130614|35924_1  90 VERAEIATKEEkelEERMQEMERQRAEIAAKEEADRQQRRAELERAQISA 139
                  555555555433346899999999*********99999888888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2624  (0.191925); expected 273.4 (0.02)
Passed bias filter:                      711  (0.0520041); expected 273.4 (0.02)
Passed Vit filter:                       130  (0.00950848); expected 13.7 (0.001)
Passed Fwd filter:                        44  (0.00321826); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:00.88
# Mc/sec: 427.53
//
Query:       MMETSP0890-20130614|35928_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   44.2   0.1    1.5e-11   44.0   0.1    1.1  1  PF08007.7  Cupin superfamily protein
    9.4e-05   21.9   0.0    0.00011   21.6   0.0    1.1  1  PF13621.1  Cupin-like domain
     0.0011   18.2   0.0     0.0016   17.7   0.0    1.2  1  PF07883.6  Cupin domain
     0.0061   15.8   0.0     0.0079   15.5   0.0    1.1  1  PF00190.17 Cupin
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.018   15.1   0.0    1.3  1  PF02373.17 JmjC domain, hydroxylase
      0.014   14.9   0.0      0.014   14.9   0.0    1.2  1  PF12852.2  Cupin
       0.11   11.8   0.0       0.17   11.1   0.0    1.3  1  PF05899.7  Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1   7.6e-15   1.5e-11     141     214 ..       1      82 [.       1      96 [. 0.79

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 7.6e-15
                  EEE--EEEEEE-.......-SSTT-SS-EE--TTT--..--SEEEEE----EEEE----EEEEE---...----EEEEEEEE- CS
    PF08007.7 141 QleGrkrWrvyk.......ptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvaed..esltlSvglrapta 214
                  Q +G+k W vyk       +++p  + k   ++ ++ + +pv ++ L+pGD+L +P g++H   + +   sl+l++gl ++ +
  MMETSP0890-20130614|35928_1   1 QTYGEKIWSVYKppdqrlsSCDPLRRGK-AGDILQVVNEKPVLQVTLKPGDILQVPAGWPHTTATSEdtASLHLTLGLDTHIW 82 
                  999*********6665554444433333.34444555579*********************999988899*******987755 PP

>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.6e-08   0.00011     199     232 ..      33      66 ..       5      79 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.6e-08
    PF13621.1 199 fprfkdakalevelepGevLYlPalWfHeVssss 232
                   + +++++ l+v+l+pG++L +Pa+W H+  +s+
  MMETSP0890-20130614|35928_1  33 LQVVNEKPVLQVTLKPGDILQVPAGWPHTTATSE 66 
                  444556689*******************988884 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.2e-07    0.0016      31      63 ..      33      68 ..      24      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8.2e-07
                 EEEE-TE...EEEE-TT-EEEE-TT-EBEEB--SSS CS
    PF07883.6 31 eltvdge...eveleaGdsvyfpagtpHrfrNtgde 63
                    v+++   +v+l++Gd++ +pag pH+ +  +d+
  MMETSP0890-20130614|35928_1 33 LQVVNEKpvlQVTLKPGDILQVPAGWPHTTATSEDT 68
                 44477777889******************9776655 PP

>> PF00190.17  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     4e-06    0.0079      66     116 ..      31      74 ..      26      87 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4e-06
                  EEEEEES.......EEEEEEEEE----EEEE-TT-EEEEEEESSSSEEEEE CS
   PF00190.17  66 rlgvvvpgcpeqsrrdehqkvrlreGdviviPagvahwlyndgdnelvavv 116
                   + +vv+++p     +  q+  l++Gd++ +Pag +h +  ++d+  + ++
  MMETSP0890-20130614|35928_1  31 DILQVVNEKP-----VL-QV-TLKPGDILQVPAGWPHTTATSEDTASLHLT 74 
                  5667777776.....44.44.5********************877666655 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   9.5e-06     0.018      75     108 ..      36      69 ..      28      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.5e-06
                  HCCG--EEEEE----EEEE----EEEEEEEEEEE CS
   PF02373.17  75 kagipvyrfvqkpgefVfvfpgayHsvfnlgfni 108
                   ++ pv +++ kpg+++ v++g++H++ +  ++ 
  MMETSP0890-20130614|35928_1  36 VNEKPVLQVTLKPGDILQVPAGWPHTTATSEDTA 69 
                  56679********************998877765 PP

>> PF12852.2  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     7e-06     0.014      56      87 ..      43      74 ..       8     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7e-06
    PF12852.2 56 pvrLsagdvvllprgeahvladspgtapeavv 87
                 +v+L++gd++ +p+g +h+ a s++ta ++++
  MMETSP0890-20130614|35928_1 43 QVTLKPGDILQVPAGWPHTTATSEDTASLHLT 74
                 49********************9998766554 PP

>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.7e-05      0.17      45      68 ..      43      66 ..      28      71 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.7e-05
                 EEEE-TT-EEEE----EEEEEEEE CS
    PF05899.7 45 tvelgaGDlvvfpkglsgtwevae 68
                 +v+l++GD++ +p+g+  t+ ++e
  MMETSP0890-20130614|35928_1 43 QVTLKPGDILQVPAGWPHTTATSE 66
                 39**************77766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.62
# Mc/sec: 502.46
//
Query:       MMETSP0890-20130614|35937_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.036   13.4   0.1      0.048   13.0   0.1    1.1  1  PF08713.6  DNA alkylation repair enzyme
      0.053   12.9   1.5      0.086   12.2   1.0    1.3  1  PF02810.10 SEC-C motif


Domain annotation for each model (and alignments):
>> PF08713.6  DNA alkylation repair enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     7e-06     0.048      50     101 ..     115     165 ..      93     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7e-06
    PF08713.6  50 eelqelaeeLwksperEerllAldlltqarkklteadlelyeklvetinnWd 101
                  ++ ++ + +L ++p+ E+r+l++ +l++  ++++ a++ ++ kl+ ++n  d
  MMETSP0890-20130614|35937_1 115 QDRKQWLTALRDQPYQEYRFLGVNILEESIQDQENAIVLFLAKLLHKKN-KD 165
                  44567999*******************9999999996666666665544.44 PP

>> PF02810.10  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0   1.3e-05     0.086       4      18 ..      56      70 ..      55      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
   PF02810.10  4 pCPCGSGkKYKkCCg 18
                  C CGS +   kCC 
  MMETSP0890-20130614|35937_1 56 KCICGSNLLTSKCCS 70
                 5*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 886.27
//
Query:       MMETSP0890-20130614|35943_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-15   56.3   0.0    4.1e-15   55.7   0.0    1.3  1  PF00481.16 Protein phosphatase 2C
    0.00014   21.2   2.2     0.0062   15.8   1.6    2.7  1  PF13672.1  Protein phosphatase 2C
  ------ inclusion threshold ------
      0.052   13.5   0.1        2.7    8.0   0.0    2.2  2  PF02579.12 Dinitrogenase iron-molybdenum cofactor


Domain annotation for each model (and alignments):
>> PF00481.16  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   8.9e-19   4.1e-15      30     224 ..      32     214 ..      20     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 8.9e-19
                  CCCHHCCCHCCCHHHHHHHHHCHHHHHHHHHHHHHHTTXX.XXGGHCHHHHHH.HHCHHHHHHCCS.HTT---EEEEEEESSSE..EEEEEE---EEEEEE---EEEESS---STTSHHHHHHHHH----EE-T--EE...---BSBSB----HHHC---ST-TSB---EEEEEEE-TT--EEEEE----CCCCHHHHHH CS
   PF00481.16  30 gkssvaffavfdghggreaakyarehleeilkerksfleleklekalrksfladtdeelksseantepsksGstavvalirgqk..lyvAnvGDSravLcrsdnakkeltedHkpsnedEreRIeeaggsvsngngRv...ngsLavsRalGdfelkpkekeqlvsaePdvtsvkideedefliLasDGlwdvlsdqeav 224
                   ks++    v+dghgg+ a++ ++++l+e++  +ks + +    + lr++ ++   ee +++ +      +G+++  ++i  +       ++GD+r+v  +s++++ + t dH+ +++ E+e + + gg++   +gRv   n+ +av RalG            +++  d+t ++ ++    li+asDG++d +s+q+a+
  MMETSP0890-20130614|35943_1  32 LKSKKIAAVVADGHGGSTASRHCAQRLPELIFAQKSPSMD----ESLRSAWAR-CVEE-YLEVE----NGVGAVCAAIYIDLDVqrGVALHCGDCRVVGLDSNGFVLFDTSDHRLDDPLEVEALLNRGGELY--EGRVragNWLVAVPRALGCNTWRT----NGIVPVADLTPFDTNSL-SALIIASDGFFDAFSSQDAA 214
                  578888999*******************755555554444....567777777.2222.32123....3445444444443333448999****************999***********************..6776333677********999997....59*******99998888.89***************986 PP

>> PF13672.1  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.6   1.4e-06    0.0062      22     196 ..      33     229 ..      21     243 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
    PF13672.1  22 sdgwll.aVaDGaGsakrSdeGsrlaveaagealeelleeeeeqeeallrailneilaevklkaeaeaqqeelkdyatTlllavit..pgeivffqiGDgaivvrdrdgevqllgepds...............geyanettfltsedaeeel................................rvrrlklepvdalllmTDGlsnslrdee.....afapllkellee 196
                  ++ +++ +VaDG+G    S++ ++ + e +   ++++  +++e+ + ++ ++++e+l             e  + +++ + +  i+    + v++++GD+++v  d++g v   ++++                +                 l                                ++  ++++ ++al++ +DG+ +++++++     +  +l+++ll++
  MMETSP0890-20130614|35943_1  33 KSKKIAaVVADGHGGSTASRHCAQRLPELI---FAQKSPSMDESLRSAWARCVEEYL-------------EVENGVGAVCAAIYIDldVQRGVALHCGDCRVVGLDSNGFVLFDTSDHRlddpleveallnrggE-----------------LyegrvragnwlvavpralgcntwrtngivpvaDLTPFDTNSLSALIIASDGFFDAFSSQDaalylHALRLFRPLLDT 229
                  55567769************9777776665...555556666666667777777777.............23345666666666552157799*********776655554333333333333333333333321.................2333444444455556667777778888898889999********************887766655445555555444 PP

>> PF02579.12  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00058       2.7      33      77 ..      16      61 ..       6      79 .. 0.71
   2 ?    3.6   0.0     0.014        64      33      84 ..      84     135 ..      74     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00058
                 GCCCSCCCSS-HHHHHHHHCT-SEEEES---H.CCHHHHCTT-SEE CS
   PF02579.12 33 peadeegggggklaellaaegvdvvivggiGp.ralaaleaagikv 77
                 p ++ +++ ++k++++l+++++ +v++ g G+  a ++ +++  ++
  MMETSP0890-20130614|35943_1 16 PDYPKRERTEEKIKQVLKSKKIAAVVADGHGGsTASRHCAQRLPEL 61
                 566778899****************999886514555555555555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.014
                  GCCCSCCCSS-HHHHHHHHCT-SEEEES---HCCHHHHCTT-SEEEE--S-B CS
   PF02579.12  33 peadeegggggklaellaaegvdvvivggiGpralaaleaagikvykgaegt 84 
                  ++ + e g g  +a++  + +v+  ++ ++G + +  l+++g  ++ ++   
  MMETSP0890-20130614|35943_1  84 EYLEVENGVGAVCAAIYIDLDVQRGVALHCGDCRVVGLDSNGFVLFDTSDHR 135
                  456677899999***************************9999888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.39s 00:00:00.95 Elapsed: 00:00:01.03
# Mc/sec: 579.31
//
Query:       MMETSP0890-20130614|35945_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-12   45.3   0.0    6.5e-12   45.0   0.0    1.1  1  PF00534.15 Glycosyl transferases group 1
    1.9e-09   37.6   0.1    2.7e-09   37.1   0.1    1.3  1  PF13692.1  Glycosyl transferases group 1
    0.00067   19.7   0.3     0.0024   17.9   0.2    1.9  1  PF13524.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.4e-15   6.5e-12      45     135 ..      66     156 ..      32     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 1.4e-15
                  GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTBCCGGG-SSG CS
   PF00534.15  45 npnlklvivGdgeeekelkklaeelelsdnvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvggpaeivkdgv 135
                   + l+l++vG+ + + ++ +l +  + +   ++++++ +++l + y na ++++ sr EgfG+ +lEA aag+pv+as ++ +  ++ +  
  MMETSP0890-20130614|35945_1  66 PSSLHLWLVGGDPLNSYETALVQGPHWNLSYTYTSHLTDNQLAAAYANAIALIYLSRDEGFGLPVLEAFAAGCPVLASRIPALIQLLGHTA 156
                  56799*************************************************************************9998887777765 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   5.9e-13   2.7e-09       3     114 ..      39     154 ..      37     188 .. 0.73

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 5.9e-13
    PF13692.1   3 lligssgsltndkdleelleealprlreklp.dvelviiGk.....gpdelarl..lepnveflgfv.e.elaellasadvglaplrfgeglplKlleylaaGlPvvasdigaeglpeeegv 114
                  ++++++g ++ +k+ + l++ +l  + ++ p +++l ++G      + ++l +   ++   +++  + + +la+++a+a  +++ +r +eg++l +le++aaG+Pv+as+i   +l ++ g 
  MMETSP0890-20130614|35945_1  39 PYLLWVGPRAGYKNGLSLFR-VL--YHARVPsSLHLWLVGGdplnsYETALVQGphWNLSYTYTSHLtDnQLAAAYANAIALIYLSR-DEGFGLPVLEAFAAGCPVLASRI--PALIQLLGH 154
                  79999999999999999**9.85..5556783599*****9433333334333223333444455557459********88888886.9*********************9..455554444 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   5.3e-07    0.0024       5      80 ..     120     211 ..     113     223 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.3e-07
    PF13524.1   5 psrsespnlrlfEaaacGtpvvtddt.........sgleelfepgkeivlfe.dleel......aeklryllanpeereaiaeaarervlae 80 
                  +sr+e++ l ++Ea a+G+pv+++++         ++l+e+  +++++  +  ++++l      +++l yl ++ e+r+a + a r+r+l  
  MMETSP0890-20130614|35945_1 120 LSRDEGFGLPVLEAFAAGCPVLASRIpaliqllghTALPECQSKNTTCASITvSPDSLtaiwhgIRALVYLDKQAERRQAARVALRRRALDF 211
                  7999*********************9666666666666666666555555555555551111112344444445555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.41s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 850.88
//
Query:       MMETSP0890-20130614|35946_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-90  300.9   2.2    9.1e-90  300.6   1.5    1.1  1  PF00493.18 MCM2/3/5 family
    0.00046   19.2   0.0    0.00084   18.4   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.016   14.6   0.0      0.029   13.8   0.0    1.4  1  PF07726.6  ATPase family associated with various cellular activities (AAA)
      0.021   15.0   0.6      0.021   15.0   0.4    2.4  3  PF13335.1  Magnesium chelatase, subunit ChlI
      0.063   12.8   0.0       0.16   11.5   0.0    1.6  1  PF07728.9  AAA domain (dynein-related subfamily)
        0.1   12.4   0.2       0.33   10.8   0.2    1.8  1  PF07848.7  PaaX-like protein


Domain annotation for each model (and alignments):
>> PF00493.18  MCM2/3/5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.6   1.5     4e-93   9.1e-90      99     331 ..       2     268 ..       1     269 [. 0.91

  Alignments for each domain:
  == domain 1    score: 300.6 bits;  conditional E-value: 4e-93
   PF00493.18  99 aavvrdketgefvleaGalvladkGvcciDefdkmkeedrtalhEamEqqtisiaKAGivatLnartsvlaAanPkggrydkkksvaeninlsealLsrFDlifvllDkvdeekDeelaehvvklhakkek...............eaeeekekee.....................keidkellrkYiayarekikPklseeakeklseaYvelRkee.......eeskkksipitvrqleslirlseAlArlrlsevvteedveeairlvkesl 331
                  a+v rd  ++ef+le+Ga+vlad+G+cciDefdkm+e+dr+a+hEamEqqtisiaKAGi ++Ln+rtsvlaAanP++gryd+ ks aeni++ +++LsrFDlif+++D +de +D+++a+hv+ +h+++                 e        +                       ++ + l++Y+ay+r+k++P+lsee+++ l+  Yv +R++         ++k++++pitvrqle+l+r+se++A++rl+++v++ d++ea+rl+k s+
  MMETSP0890-20130614|35946_1   2 ASVIRD-AKKEFYLEGGAMVLADGGICCIDEFDKMRENDRVAIHEAMEQQTISIAKAGICTVLNSRTSVLAAANPVFGRYDDLKSAAENIDMMTTILSRFDLIFIVRDVRDEARDTAIAKHVMGIHIRAGDrgefakirkgnqdtdE--------QrrstklqnntalqlgdpddpdLILEPNELKQYVAYCRAKCEPRLSEETSRSLAAEYVAIRQSVkrqadayGGRKHQAVPITVRQLEALVRISESIAKMRLNDEVQPIDAQEALRLFKVST 268
                  788998.6789*******************************************************************************************************************998658999998877543221........0233567888999********9789*************************************888776654333899****************************************9886 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.7e-07   0.00084      98     165 ..      15      81 ..       9     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.7e-07
   PF01078.16  98 kpGeislahnGvLfLDElpefkrkvleaLRePledgevtisrakakveyparfqlvaamNpcpcgklg 165
                  + G++ la  G+  +DE+ +++++   a+ e +e+++++i++a   +   +r+ ++aa+Np   g+++
  MMETSP0890-20130614|35946_1  15 EGGAMVLADGGICCIDEFDKMRENDRVAIHEAMEQQTISIAKAGICTVLNSRTSVLAAANPVF-GRYD 81 
                  56999********************************************************74.4444 PP

>> PF07726.6  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05     0.029      45     113 ..       3      76 ..       1      84 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
    PF07726.6  45 evyeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtvege..thklpepflvlatqnpi 113
                  +v+++++kef ++ G+++ a+  +   de ++     + a+ eame+++++++++   + l++   vla+ np+
  MMETSP0890-20130614|35946_1   3 SVIRDAKKEFYLEGGAMVlADggICCIDEFDKMRENDRVAIHEAMEQQTISIAKAgiCTVLNSRTSVLAAANPV 76 
                  577888899999999865233449999**********************999865226789************8 PP

>> PF13335.1  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         6   1.4e+04      43      61 ..      35      53 ..      30      55 .. 0.64
   2 ?   15.0   0.4   9.3e-06     0.021       7      95 ..     176     263 ..     172     263 .. 0.92
   3 ?   -1.2   0.1       1.1   2.5e+03       5      44 ..     287     324 ..     286     348 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 6
    PF13335.1 43 ldseaeklleqalerlglS 61
                 ++++++ ++++a+e++ +S
  MMETSP0890-20130614|35946_1 35 MRENDRVAIHEAMEQQTIS 53
                 5556666667777776666 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 9.3e-06
    PF13335.1   7 evrerVaaarerqaeRlaaiklnaelsgeelrklceldseaeklleqalerlglSaRglhrilkvArTiADLagseriekehlaeAlsy 95 
                  e+++ Va +r+  + Rl+  ++ + l +e +     ++++a ++  +  +   +++R l+ +++++ +iA ++ +++++  + +eAl++
  MMETSP0890-20130614|35946_1 176 ELKQYVAYCRAKCEPRLS-EETSRSLAAEYVAIRQSVKRQADAYGGRKHQAVPITVRQLEALVRISESIAKMRLNDEVQPIDAQEALRL 263
                  788999999999999999.788899999999999999999999999****************************************985 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.1
    PF13335.1   5 saevrerVaaarerqaeRlaaiklnaelsgeelrklceld 44 
                  s+++r+ V +a+++ ++Rl     n    ++ +++ ++l 
  MMETSP0890-20130614|35946_1 287 SNDLRTAVGNAETFIKQRLP--VGNEATIARLIEEAIALG 324
                  67788888888888888877..555555555555555554 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.2e-05      0.16      63     130 ..      21      82 ..       3      89 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.2e-05
                  --G-SEEEEESGGG---HHHHHHHHHHHSSEEE..----EEE---.......-EEEEE-SS--.-TT- CS
    PF07728.9  63 aregeilvlDEveraesevlnsLlslleerrlllpeggelvkaknddlleknfrviatanpldrslne 130
                    +g i+++DE+++++ +   + +  +e++++++ + g  +  ++       ++v+a+anp+ ++  +
  MMETSP0890-20130614|35946_1  21 LADGGICCIDEFDKMRENDRVAIHEAMEQQTISIAKAGICTVLNSR------TSVLAAANPVFGRYDD 82 
                  3489*****************************7777666655553......9999999998755555 PP

>> PF07848.7  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00014      0.33      17      61 ..     307     351 ..     302     353 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
                  TTS---HHHHHHHHS-----HHHHHHHHHHH-----EE-----.. CS
    PF07848.7  17 hggaiwlgsLirllaelGiserlvRaalsRlakaGwlvrekegrr 61 
                   g++++++ Li+   +lG+++ +vR ++  + ++  l+ ++ gr+
  MMETSP0890-20130614|35946_1 307 VGNEATIARLIEEAIALGHQDIAVRRSIQVMMARAELQDSDRGRK 351
                  689999*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.39s 00:00:01.06 Elapsed: 00:00:00.60
# Mc/sec: 1421.84
//
Query:       MMETSP0890-20130614|35950_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   24.4   0.1    2.3e-05   23.6   0.0    1.5  1  PF09851.4 Short C-terminal domain
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.033   13.8   0.0    1.3  1  PF05120.7 Gas vesicle protein G


Domain annotation for each model (and alignments):
>> PF09851.4  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.3e-09   2.3e-05       3      30 ..     174     201 .]     172     201 .] 0.94

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.3e-09
    PF09851.4   3 daLekLkeLyarGeIteEEFeakKkkLL 30 
                  ++L  Lk  +++G+I++ +Fe++K k+L
  MMETSP0890-20130614|35950_1 174 RRLTDLKHALDAGLISQTDFEQAKTKIL 201
                  6899**********************98 PP

>> PF05120.7  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-06     0.033      28      62 ..     167     201 .]     162     201 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-06
    PF05120.7  28 ddpenlrkeLaeLqleleaGeIseeeFdrrEeeLL 62 
                  +++  + ++L++L+ +l+aG Is++ F++   ++L
  MMETSP0890-20130614|35950_1 167 EEASPVYRRLTDLKHALDAGLISQTDFEQAKTKIL 201
                  56778999********************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 764.55
//
Query:       MMETSP0890-20130614|35948_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-10   38.0   0.0    1.6e-09   37.3   0.0    1.3  1  PF09239.6 Topoisomerase VI B subunit, transducer


Domain annotation for each model (and alignments):
>> PF09239.6  Topoisomerase VI B subunit, transducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.2e-13   1.6e-09     108     160 .]       1      54 [.       1      54 [. 0.95

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.2e-13
                  EEESS--BS-----SB-.--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF09239.6 108 vastkvpfksesKeaia.dveeieeeirlalkevarkLkkylskkekekeeekk 160
                  ++stk+pfk++sKe+i+ d +ei++ +r+ l++++ +L+++l++++  ++++++
  MMETSP0890-20130614|35948_1   1 IVSTKIPFKGTSKEYIGeDATEIHDAVRSCLQHCCSQLRAHLARRDMDRKHKDR 54 
                  79**************9889*************************999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:00.84
# Mc/sec: 1041.27
//
Query:       MMETSP0890-20130614|35954_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   27.9   0.0    6.4e-06   26.2   0.0    1.8  1  PF13519.1  von Willebrand factor type A domain
     0.0035   16.4   0.0        1.2    8.1   0.0    2.2  2  PF05762.9  VWA domain containing CoxE-like protein
  ------ inclusion threshold ------
      0.048   13.2   0.0       0.13   11.8   0.0    1.6  1  PF00092.23 von Willebrand factor type A domain
      0.049   13.1   0.0       0.12   11.9   0.0    1.6  2  PF13768.1  von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.9e-09   6.4e-06       1     131 [.     100     234 ..     100     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.9e-09
    PF13519.1   1 dlvlvlDvSgSMnae.dv.....sptrldaakaalkdlldel...pgdrvglvafsgsaelvaplt..sdraalkaalnsldprlmpgggtnlaaalalalellakadgrraaivlvtDGedn.ssdieaasalkragikiyv 131
                  d+v++ D SgSMna  d      ++tr+++++++l+ l+ +l    +d+  + +f +++e        +d+++l+   ++   r  ++g+t+l a l+  ++ + ++    + ++++tDGe++ +s +e  + +++++ ++y 
  MMETSP0890-20130614|35954_1 100 DIVVIADDSGSMNAItDPrkitePVTRWEELQQTLRMLVTMLlvvEHDEGFWLKFLNDPEW----YkiTDKDQLERIFTAKP-R--AHGKTPLKANLEYLMKGYGSDE-KDTLLLILTDGEPSdCSFEELSQIIRNKNDDVYC 234
                  79**********98734466665699*************9955557777778888887763....22368999888666555.4..69*****************998.99**********9844444455556788877775 PP

>> PF05762.9  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0014         5      58      74 ..      99     115 ..      86     118 .. 0.89
   2 !    8.1   0.0   0.00035       1.2     115     163 ..     168     215 ..     163     227 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0014
    PF05762.9  58 rrlvllvDvSgSmeays 74 
                  +++v+++D SgSm+a++
  MMETSP0890-20130614|35954_1  99 TDIVVIADDSGSMNAIT 115
                  589***********986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00035
    PF05762.9 115 aLlrvsaavedlgGgTrigealaeflelvtrpalrravvvivSDglerg 163
                   L+r+  a +  +G T + + l++++++      ++++++i++Dg+ ++
  MMETSP0890-20130614|35954_1 168 QLERIFTAKPRAHGKTPLKANLEYLMKGYGSDE-KDTLLLILTDGEPSD 215
                  566666566889******************999.9**********7555 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.9e-05      0.13       1     122 [.     100     219 ..     100     235 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.9e-05
                  EEEEEEE-STTS-H...........HHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEEEEE-TCCHHCCSSCGGHH-CCGGSTTS-B-HHHHHHHHHHHTTSTTSHHHTTSEEEEEEE-----C---STH CS
   PF00092.23   1 DivfvlDgSgSige...........enfekvkefikkliekldigpdsvrvglvqyssdaktevslndfkskeellsavsknlkylgggtntgkALkyalenlfssaagsrenapkvvillTDGksndggspe 122
                  Div++ D SgS+ +           +++e+ +++++ l+ +l    +++    + + +d+ ++ +++d     ++l+ ++  ++   g t + + L+y ++ + s       +   ++++lTDG+++d +  e
  MMETSP0890-20130614|35954_1 100 DIVVIADDSGSMNAitdprkitepvTRWEELQQTLRMLVTML-LVVEHDEGFWLKFLNDP-EWYKITDK----DQLERIFTAKPRAHGKTPLKANLEYLMKGYGSD------EKDTLLLILTDGEPSDCS-FE 219
                  9*************9998888888877*************99.99999999999999999.66777774....566666699********************6655......89999********99973.33 PP

>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.2   4.1e+03       2      15 ..     100     113 ..      99     115 .. 0.86
   2 ?   11.9   0.0   3.6e-05      0.12      62     135 ..     169     241 ..     136     248 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.2
    PF13768.1   2 evVivvDvsssmsg 15 
                  ++V++ D s+sm +
  MMETSP0890-20130614|35954_1 100 DIVVIADDSGSMNA 113
                  89999****99975 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.6e-05
    PF13768.1  62 lqellqkvkelead.lGasnlegaLkealrqpakpgearhvlllsdgss.tsgaervlqliraaark.irifalglg 135
                  l+++     + +++  G + l++ L+ +++  ++ +    +l+l+dg + + + e+++q ir +  + ++ fa+ ++
  MMETSP0890-20130614|35954_1 169 LERI----FTAKPRaHGKTPLKANLEYLMKGYGSDEKDTLLLILTDGEPsDCSFEELSQIIRNKNDDvYCSFAMCTD 241
                  3333....22233337**************99999*************96667799999999888772555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.62
# Mc/sec: 1209.77
//
Query:       MMETSP0890-20130614|35957_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-11   41.6   0.0    1.9e-10   40.6   0.0    1.5  1  PF13499.1  EF-hand domain pair
    6.9e-10   37.4   0.2    0.00018   20.4   0.0    2.3  2  PF00036.27 EF hand
    1.1e-08   34.1   0.1     0.0013   18.3   0.0    2.4  2  PF13405.1  EF-hand domain
    5.2e-08   31.7   0.5     0.0078   15.3   0.0    2.7  2  PF13202.1  EF hand
    1.6e-05   24.3   1.7     0.0065   15.9   0.1    2.3  2  PF13833.1  EF-hand domain pair
    0.00015   21.6   0.2    0.00042   20.2   0.1    1.7  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
  ------ inclusion threshold ------
      0.099   10.6   0.1       0.11   10.4   0.1    1.2  1  PF09763.4  Exocyst complex component Sec3


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   9.8e-14   1.9e-10       5      65 ..      18      77 ..      11      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 9.8e-14
    PF13499.1  5 aFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65
                 +Fk lD+d+++++d++e+ ++l++l     +  +++ l+ if+++D+n+d +ls++Ef+++
  MMETSP0890-20130614|35957_1 18 MFKVLDQDKNNFIDRQEWAYVLRRLI-GVGPNVSDDDLESIFQQIDLNKDQLLSMQEFAAF 77
                 8*********************9975.33377777777888*****************986 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   9.1e-08   0.00018       5      29 .]      18      42 ..      16      42 .. 0.93
   2 !   15.0   0.0     5e-06    0.0097       2      27 ..      54      79 ..      53      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 9.1e-08
                 HHHHHCTTTSSEBEHHHHHHHHHHH CS
   PF00036.27  5 aFkefDkDgdGkIsfeEfkealkkl 29
                 +Fk++D+D++ +I+ +E+  +l++l
  MMETSP0890-20130614|35957_1 18 MFKVLDQDKNNFIDRQEWAYVLRRL 42
                 9*****************9999875 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5e-06
                 HHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealk 27
                 l+ +F+ +D ++d  +s +Ef ++ +
  MMETSP0890-20130614|35957_1 54 LESIFQQIDLNKDQLLSMQEFAAFAR 79
                 889******************98865 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.5e-07    0.0013       5      28 ..      18      41 ..      16      48 .. 0.90
   2 !   13.4   0.0   2.5e-05     0.049       2      27 ..      54      79 ..      53      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.5e-07
                 --GCC-------B---HHHHHHH. CS
    PF13405.1  5 aFklfDkdgdGkidaeELrdaLrk 28
                  Fk +D+d++++id++E   +Lr+
  MMETSP0890-20130614|35957_1 18 MFKVLDQDKNNFIDRQEWAYVLRR 41
                 7*********************96 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.5e-05
                 HH---GCC-------B---HHHHHHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELrdaLr 27
                 l+++F+++D ++d  ++ +E+ ++ r
  MMETSP0890-20130614|35957_1 54 LESIFQQIDLNKDQLLSMQEFAAFAR 79
                 789******************99877 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     4e-06    0.0078       4      21 ..      18      35 ..      16      43 .. 0.86
   2 !   14.0   0.1     1e-05      0.02       1      24 [.      54      77 ..      54      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-06
                 HHHHH--S----B-HHHH CS
    PF13202.1  4 tFrafDlNgDGkIsreEL 21
                 +F+++D ++  +I+r+E+
  MMETSP0890-20130614|35957_1 18 MFKVLDQDKNNFIDRQEW 35
                 7****************9 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1e-05
                 HHHHHHHH--S----B-HHHHHHH CS
    PF13202.1  1 lkdtFrafDlNgDGkIsreELkrl 24
                 l+++F+++DlN+D  +s++E+ ++
  MMETSP0890-20130614|35957_1 54 LESIFQQIDLNKDQLLSMQEFAAF 77
                 6889*********99999999887 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00076       1.5      29      53 ..      17      41 ..      16      42 .. 0.86
   2 !   15.9   0.1   3.3e-06    0.0065      20      50 ..      46      77 ..      38      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00076
    PF13833.1 29 ilfrefDtdgdGkisfeEFcvller 53
                  +f+++D+d+++ i+  E+  +l+r
  MMETSP0890-20130614|35957_1 17 SMFKVLDQDKNNFIDRQEWAYVLRR 41
                 6**************9999866665 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.3e-06
    PF13833.1 20 kg.lseeevdilfrefDtdgdGkisfeEFcvl 50
                 +  +s+++++ +f  +D+++d  +s  EF ++
  MMETSP0890-20130614|35957_1 46 GPnVSDDDLESIFQQIDLNKDQLLSMQEFAAF 77
                 3369*************************987 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.1e-07   0.00042      59     111 ..      18      75 ..       4      77 .. 0.84
   2 !    9.2   0.1   0.00054       1.1      58      80 ..      56      78 ..      47      86 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.1e-07
    PF10591.4  59 kFnqlDtnkdkvlsksElaplrapl.....vklehCikeffksCDadkdkkisleEWc 111
                  +F+ lD++k+++++++E+a + + l        +   ++ f++ D++kd+ +s++E++
  MMETSP0890-20130614|35957_1  18 MFKVLDQDKNNFIDRQEWAYVLRRLigvgpNVSDDDLESIFQQIDLNKDQLLSMQEFA 75 
                  9********************999944333234566789*****************97 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00054
    PF10591.4 58 WkFnqlDtnkdkvlsksElaplr 80
                   F+q+D nkd++ls +E+a++ 
  MMETSP0890-20130614|35957_1 56 SIFQQIDLNKDQLLSMQEFAAFA 78
                 45888888888888888887765 PP

>> PF09763.4  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.9e-05      0.11      89     144 ..      52     105 ..      51     164 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.9e-05
    PF09763.4  89 keLesllntvslsesdleaLke.gelssenglealenaleaLfkAlnaIdsdlkdld 144
                  ++Les+ ++++l++++l +++e + + ++    +  +++++L+ A++aI+++ + l+
  MMETSP0890-20130614|35957_1  52 DDLESIFQQIDLNKDQLLSMQEfAAFARAA---NRHTQAKTLLHAVSAIRRMSSGLN 105
                  58********************99997777...77889************9887333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 749.72
//
Query:       MMETSP0890-20130614|35959_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-29  101.9   8.6    2.7e-13   49.7   0.1    3.6  3  PF13499.1  EF-hand domain pair
    9.4e-26   87.0  12.6    1.7e-06   26.8   0.1    5.9  6  PF00036.27 EF hand
    7.2e-21   73.4  12.8    3.1e-09   36.1   0.2    5.4  5  PF13833.1  EF-hand domain pair
    1.3e-20   71.2  10.3    0.00048   19.6   0.0    6.0  6  PF13405.1  EF-hand domain
    2.9e-17   61.0   7.8    0.00028   19.9   0.0    5.4  5  PF13202.1  EF hand
    0.00086   19.2   0.0       0.56   10.1   0.0    2.6  2  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
     0.0059   16.2   3.1        5.6    6.6   0.0    3.9  4  PF12763.2  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.093   12.3   0.0    1.6  1  PF09114.5  Transcription factor MotA, activation domain


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   1.6e-16   2.7e-13       4      64 ..       3      59 ..       1      61 [. 0.95
   2 !    7.7   0.3     0.002       3.5       5      29 ..     165     189 ..     141     201 .. 0.77
   3 !   48.5   0.1   3.8e-16   6.5e-13       4      63 ..     200     258 ..     194     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.6e-16
    PF13499.1  4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflq 64
                 +aFk +D d+++y+  +e++++l ++g+ ++deev+ +    ++++D +gdG++s++Ef+ 
  MMETSP0890-20130614|35959_1  3 DAFKFIDLDKNNYIGAAEIRHVLICMGELITDEEVDAM----IQMVDADGDGQVSYSEFYD 59
                 69*************************99999999999....*****************86 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.002
    PF13499.1   5 aFkllDkdgdgyldkeeLlrllkhl 29 
                  +F+l+D+d+ +++d   +   + + 
  MMETSP0890-20130614|35959_1 165 LFSLFDQDKRNFIDIKQFILGMANY 189
                  4999999999999999988877765 PP

  == domain 3    score: 48.5 bits;  conditional E-value: 3.8e-16
    PF13499.1   4 eaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEfl 63 
                   +F+l+D+d++g+l+  eL+++l + + +  +e+v++ +d i+k++D +gdG+ls++Ef+
  MMETSP0890-20130614|35959_1 200 LVFDLYDQDRSGFLSIGELTNILMANHMQ-GEESVKKKVDTIMKQADRDGDGTLSRPEFA 258
                  47*********************997644.49***************************6 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   8.4e-06     0.014       3      26 ..       2      25 ..       1      28 [. 0.91
   2 !   26.8   0.1   9.9e-10   1.7e-06       1      27 [.      36      62 ..      36      63 .. 0.93
   3 ?   -1.7   0.0       1.2   2.1e+03      17      26 ..     145     154 ..     144     155 .. 0.86
   4 !   13.2   0.2   2.1e-05     0.036       5      28 ..     165     188 ..     161     189 .. 0.90
   5 !   17.6   0.0   8.5e-07    0.0015       5      27 ..     201     223 ..     197     225 .. 0.90
   6 !   19.4   0.0   2.2e-07   0.00037       2      23 ..     237     258 ..     236     264 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.4e-06
                 HHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  3 keaFkefDkDgdGkIsfeEfkeal 26
                 ++aFk +D D++ +I   E +++l
  MMETSP0890-20130614|35959_1  2 EDAFKFIDLDKNNYIGAAEIRHVL 25
                 589******************998 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 9.9e-10
                 HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27  1 elkeaFkefDkDgdGkIsfeEfkealk 27
                 e++ +++++D DgdG++s++Ef ++++
  MMETSP0890-20130614|35959_1 36 EVDAMIQMVDADGDGQVSYSEFYDVVT 62
                 799*******************99875 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.2
                  BEHHHHHHHH CS
   PF00036.27  17 IsfeEfkeal 26 
                  I++e f+++l
  MMETSP0890-20130614|35959_1 145 IDYETFCRVL 154
                  9*****9986 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 2.1e-05
                  HHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   5 aFkefDkDgdGkIsfeEfkealkk 28 
                  +F++fD+D+  +I+ + f+  +++
  MMETSP0890-20130614|35959_1 165 LFSLFDQDKRNFIDIKQFILGMAN 188
                  7******************99975 PP

  == domain 5    score: 17.6 bits;  conditional E-value: 8.5e-07
                  HHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   5 aFkefDkDgdGkIsfeEfkealk 27 
                  +F+++D+D++G++s  E+ ++l+
  MMETSP0890-20130614|35959_1 201 VFDLYDQDRSGFLSIGELTNILM 223
                  7*****************99986 PP

  == domain 6    score: 19.4 bits;  conditional E-value: 2.2e-07
                  HHHHHHHHCTTTSSEBEHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfk 23 
                  ++ ++k +D+DgdG++s  Ef 
  MMETSP0890-20130614|35959_1 237 VDTIMKQADRDGDGTLSRPEFA 258
                  688******************7 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.014        24      31      46 ..       5      20 ..       2      26 .. 0.87
   2 !   36.1   0.2   1.8e-12   3.1e-09      17      52 ..      28      62 ..      15      64 .. 0.79
   3 !    5.9   0.2     0.005       8.6      26      44 ..     161     179 ..     144     189 .. 0.82
   4 !    7.6   0.1    0.0015       2.6      18      43 ..     185     214 ..     176     215 .. 0.84
   5 !   26.4   0.0   1.9e-09   3.3e-06       9      52 ..     217     262 ..     212     264 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.014
    PF13833.1 31 frefDtdgdGkisfeE 46
                 f+ +D+d++++i+ +E
  MMETSP0890-20130614|35959_1  5 FKFIDLDKNNYIGAAE 20
                 99**********9877 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 1.8e-12
    PF13833.1 17 lglkglseeevdilfrefDtdgdGkisfeEFcvlle 52
                 +g   +++eevd+++ ++D+dgdG +s+ EF+++++
  MMETSP0890-20130614|35959_1 28 MGEL-ITDEEVDAMIQMVDADGDGQVSYSEFYDVVT 62
                 3555.***************************9876 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.005
    PF13833.1  26 evdilfrefDtdgdGkisf 44 
                  e +ilf++fD+d+ + i+ 
  MMETSP0890-20130614|35959_1 161 ETHILFSLFDQDKRNFIDI 179
                  689*********9987775 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0015
    PF13833.1  18 glkg...lseee.vdilfrefDtdgdGkis 43 
                  g+     +s+ee ++ +f++ D+d++G +s
  MMETSP0890-20130614|35959_1 185 GMANyvdFSHEErLTLVFDLYDQDRSGFLS 214
                  6666777*******************9665 PP

  == domain 5    score: 26.4 bits;  conditional E-value: 1.9e-09
    PF13833.1   9 eLkral.allglkg.lseee.vdilfrefDtdgdGkisfeEFcvlle 52 
                  eL  +l a+ +++g  s ++ vd++++ +D+dgdG +s  EF v+ +
  MMETSP0890-20130614|35959_1 217 ELTNILmAN-HMQGeESVKKkVDTIMKQADRDGDGTLSRPEFAVVGQ 262
                  788888776.77777444444**********************9876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06    0.0023       4      26 ..       3      25 ..       2      29 .. 0.91
   2 !   13.3   0.0     3e-05     0.052       7      27 ..      42      62 ..      36      71 .. 0.88
   3 ?   -1.2   0.0       1.4   2.4e+03       6      27 ..     132     155 ..     129     159 .. 0.71
   4 !   13.5   0.2   2.6e-05     0.044       5      26 ..     165     186 ..     163     191 .. 0.90
   5 !   19.6   0.0   2.8e-07   0.00048       5      27 ..     201     223 ..     197     229 .. 0.90
   6 !    8.7   0.0   0.00089       1.5       7      23 ..     242     258 ..     236     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.4e-06
                 ---GCC-------B---HHHHHH CS
    PF13405.1  4 eaFklfDkdgdGkidaeELrdaL 26
                 +aFk +D d++++i a+E+r++L
  MMETSP0890-20130614|35959_1  3 DAFKFIDLDKNNYIGAAEIRHVL 25
                 79*******************99 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3e-05
                 GCC-------B---HHHHHHH CS
    PF13405.1  7 klfDkdgdGkidaeELrdaLr 27
                 ++ D dgdG+++ +E+ d+ +
  MMETSP0890-20130614|35959_1 42 QMVDADGDGQVSYSEFYDVVT 62
                 689*************99875 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 1.4
                  -GCC.------.-B---HHHHHHH CS
    PF13405.1   6 Fklf.DkdgdG.kidaeELrdaLr 27 
                  F+++ D+ ++   id e + ++L 
  MMETSP0890-20130614|35959_1 132 FRALpDNEKKEsSIDYETFCRVLD 155
                  555556554445899999999886 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 2.6e-05
                  --GCC-------B---HHHHHH CS
    PF13405.1   5 aFklfDkdgdGkidaeELrdaL 26 
                  +F lfD+d+ ++id+++++  +
  MMETSP0890-20130614|35959_1 165 LFSLFDQDKRNFIDIKQFILGM 186
                  7****************98655 PP

  == domain 5    score: 19.6 bits;  conditional E-value: 2.8e-07
                  --GCC-------B---HHHHHHH CS
    PF13405.1   5 aFklfDkdgdGkidaeELrdaLr 27 
                  +F+l+D+d++G++++ EL ++L 
  MMETSP0890-20130614|35959_1 201 VFDLYDQDRSGFLSIGELTNILM 223
                  8*******************997 PP

  == domain 6    score: 8.7 bits;  conditional E-value: 0.00089
                  GCC-------B---HHH CS
    PF13405.1   7 klfDkdgdGkidaeELr 23 
                  k+ D+dgdG++++ E+ 
  MMETSP0890-20130614|35959_1 242 KQADRDGDGTLSRPEFA 258
                  788**********9995 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0013       2.3       2      24 ..       2      24 ..       2      25 .. 0.88
   2 !   19.7   0.0   1.9e-07   0.00033       3      25 .]      39      61 ..      37      61 .. 0.87
   3 ?    0.0   0.3      0.32   5.5e+02       4      12 ..     165     173 ..     163     180 .. 0.79
   4 !   13.3   0.0   2.1e-05     0.035       4      23 ..     201     220 ..     199     223 .. 0.89
   5 !   19.9   0.0   1.7e-07   0.00028       5      22 ..     241     258 ..     237     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0013
                 HHHHHHH--S----B-HHHHHHH CS
    PF13202.1  2 kdtFrafDlNgDGkIsreELkrl 24
                 +d+F+ +Dl++   I + E + +
  MMETSP0890-20130614|35959_1  2 EDAFKFIDLDKNNYIGAAEIRHV 24
                 578************99998875 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.9e-07
                 HHHHHH--S----B-HHHHHHHH CS
    PF13202.1  3 dtFrafDlNgDGkIsreELkrlv 25
                 ++ + +D++gDG++s +E++ +v
  MMETSP0890-20130614|35959_1 39 AMIQMVDADGDGQVSYSEFYDVV 61
                 57799**************9875 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.32
                  HHHHH--S- CS
    PF13202.1   4 tFrafDlNg 12 
                  +F+ fD ++
  MMETSP0890-20130614|35959_1 165 LFSLFDQDK 173
                  69****998 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 2.1e-05
                  HHHHH--S----B-HHHHHH CS
    PF13202.1   4 tFrafDlNgDGkIsreELkr 23 
                  +F+ +D +++G++s+ EL +
  MMETSP0890-20130614|35959_1 201 VFDLYDQDRSGFLSIGELTN 220
                  69****************87 PP

  == domain 5    score: 19.9 bits;  conditional E-value: 1.7e-07
                  HHHH--S----B-HHHHH CS
    PF13202.1   5 FrafDlNgDGkIsreELk 22 
                   +++D +gDG++sr E+ 
  MMETSP0890-20130614|35959_1 241 MKQADRDGDGTLSRPEFA 258
                  68**************95 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00033      0.56      60     111 ..       5      58 ..       3      60 .. 0.83
   2 !    6.3   0.0    0.0051       8.7      54     111 ..     196     258 ..     186     260 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00033
    PF10591.4  60 FnqlDtnkdkvlsksElaplrapl..vklehCikeffksCDadkdkkisleEWc 111
                  F+ +D +k++++  +E++++   +  +  ++ ++ ++++ Dad d+++s +E+ 
  MMETSP0890-20130614|35959_1   5 FKFIDLDKNNYIGAAEIRHVLICMgeLITDEEVDAMIQMVDADGDGQVSYSEFY 58 
                  7778888899*******99876655545566699******************96 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0051
    PF10591.4  54 eaveWkFnqlDtnkdkvlsksElaplr.aplvklehC....ikeffksCDadkdkkisleEWc 111
                  e +   F+  D+++ ++ls  El+++  a+ ++ e+     +++ +k++D d d+++s  E++
  MMETSP0890-20130614|35959_1 196 ERLTLVFDLYDQDRSGFLSIGELTNILmANHMQGEESvkkkVDTIMKQADRDGDGTLSRPEFA 258
                  5566779999999999999999998741444555554111156789999*********99996 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0033       5.6      22      66 ..      12      58 ..       5      79 .. 0.79
   2 ?    0.8   0.3      0.21   3.6e+02      46      74 ..     163     191 ..     120     204 .. 0.66
   3 ?    0.4   0.0      0.28   4.8e+02      42      66 ..     195     219 ..     186     228 .. 0.83
   4 !    5.3   0.0    0.0081        14      41      68 ..     233     260 ..     216     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0033
    PF12763.2 22 ednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefc 66
                 ++n++   ++  vl      +++++++ + ++ d d dg++ + ef 
  MMETSP0890-20130614|35959_1 12 KNNYIGAAEIRHVLICmgELITDEEVDAMIQMVDADGDGQVSYSEFY 58
                 56677777777666431145678899*******************95 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.21
    PF12763.2  46 ekiwdladidedgkldfeefciamrlifd 74 
                  + +++l d d+ + +d ++f++ m    d
  MMETSP0890-20130614|35959_1 163 HILFSLFDQDKRNFIDIKQFILGMANYVD 191
                  34577888888888888888888865555 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.28
    PF12763.2  42 edklekiwdladidedgkldfeefc 66 
                  e++l+ ++dl d d  g l   e++
  MMETSP0890-20130614|35959_1 195 EERLTLVFDLYDQDRSGFLSIGELT 219
                  6889999999999999999888865 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.0081
    PF12763.2  41 eedklekiwdladidedgkldfeefcia 68 
                   ++k++ i + ad d dg+l   ef+++
  MMETSP0890-20130614|35959_1 233 VKKKVDTIMKQADRDGDGTLSRPEFAVV 260
                  5678999******************986 PP

>> PF09114.5  Transcription factor MotA, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.4e-05     0.093      22      80 ..       7      62 ..       2      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.4e-05
    PF09114.5 22 liqiakkdfitaaevresveaelnkavvnsniGvlikkelveksGdGliiteeaddiiv 80
                 +i + k+++i aae+r  +   +++ +   ++  +i+  +v+  GdG +   e  d+++
  MMETSP0890-20130614|35959_1  7 FIDLDKNNYIGAAEIRHVL-ICMGELITDEEVDAMIQ--MVDADGDGQVSYSEFYDVVT 62
                 89999************55.99**************5..8*********9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       491  (0.0359128); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.57
# Mc/sec: 1318.00
//
Query:       MMETSP0890-20130614|35967_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-24   84.5   0.0    1.1e-23   84.0   0.0    1.2  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   8.3e-28   1.1e-23      11     155 ..      38     205 ..      29     206 .. 0.75

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 8.3e-28
                  XXXX.XXXXXX.---........-TTTTT--------TTT------------------S--TT--.STT--......---.....--S-TT.THHHH---HHHHHHHHTT---------------.............---------..-----------STTT----TTTTT------- CS
   PF00504.16  11 gdlg.fDplglskdp........tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeag......gls.....lptllalqillligflelareqelkapesegsekraypGg.............lgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                   ++g +Dpl++ +          t+ +lr++E++HGRvAM+a+lG+l++    ++s+ +kf+        g        +     +p ++ +qi++lig+le +   e+ +p   +    + pG              ++ dp+++    +e+ek + ++ Ei+nGRlAM+++lgf+++a
  MMETSP0890-20130614|35967_1  38 SKIGfWDPLKVLDLSfwnlsneaTIGYLRHSEIKHGRVAMAAFLGYLAQSTP-QVSGPHKFLPYK-----GyepglsP-PeqwdaMPLAAKIQIFTLIGMLESY--GEILDPHYCN---GGLPGYyppikgkrpeivfNLYDPFEIIpaASEAEKVRGRQCEINNGRLAMFGILGFLAEA 205
                  56789999999843377888889***************************44.433333332222.....11111220.1223348889999***********7..7776765555...5666667777888888888779999877789999************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.78
# Mc/sec: 721.98
//
Query:       MMETSP0890-20130614|35966_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-14   52.9   0.1    8.2e-14   51.6   0.1    1.6  1  PF01399.22 PCI domain
     0.0055   16.4   5.3       0.03   14.1   1.0    3.3  3  PF13424.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.043   13.3   0.6        0.5    9.9   0.1    2.4  2  PF04010.8  Protein of unknown function (DUF357)


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.1   1.8e-17   8.2e-14       9     104 ..     161     251 ..     155     252 .. 0.94

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 1.8e-17
                  XXXXXXXXXXXXXXXXX.....XXXXXXX------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE-- CS
   PF01399.22   9 alrsgnlsgfseelkdleeelladdglsqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvfk 104
                   ++++++++ +e+l  +     ++  l++ l+  e+ +++++l  +s iy ++++e+la lld+ +d++ ++ +++I+d++l+a+idq++g+++f+
  MMETSP0890-20130614|35966_1 161 LVYKRDIAALEETLLPH-----HKAILADGLTIPERATIQHNLVALSHIYANLTFEQLAMLLDIESDRALQVAARMISDNRLSASIDQVDGLLIFQ 251
                  678889***********.....777778899999************************************************************96 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.26   1.2e+03       4      16 ..       3      15 ..       1      19 [. 0.60
   2 !   14.1   1.0   6.5e-06      0.03       4      71 ..      21      90 ..      15      97 .. 0.88
   3 ?    1.6   0.0     0.051   2.3e+02      29      52 ..     108     130 ..     104     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.26
    PF13424.1  4 latilnnlalvlr 16
                  a++l+nla+ +r
  MMETSP0890-20130614|35966_1  3 AARTLTNLACEYR 15
                 4566666665554 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 6.5e-06
    PF13424.1  4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdt.aralnnlanlylalgdy.deAleylek 71
                  a ++  +a++++++ +  +A+++  ka  l   ++++h  + +r+   la+++ a+ ++ ++A+ y+e 
  MMETSP0890-20130614|35966_1 21 KAELYVKIAETFLEEDESIDAEAYVSKASGLMHAVPNEHWSLhLRYRVTLARTLDARRKFlEAAISYYEL 90
                 588999*************************999***9987758999************73669999985 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.051
    PF13424.1  29 ekalel.lrelgddhpdtaralnnl 52 
                      ++ +++lg++ p++ar+l  l
  MMETSP0890-20130614|35966_1 108 S--KAItCALLGPAGPQRARILATL 130
                  4..4555789**********99766 PP

>> PF04010.8  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00011       0.5      33      67 ..      20      54 ..       5      56 .. 0.91
   2 ?    0.7   0.0     0.083   3.8e+02      27      40 ..      76      89 ..      70      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH CS
    PF04010.8 33 emaesYleDakyylekgDlvtAlaalsYahGlLDa 67
                 e ae Y++ a+++le+++ + A a++s a Gl+ a
  MMETSP0890-20130614|35966_1 20 EKAELYVKIAETFLEEDESIDAEAYVSKASGLMHA 54
                 6799***************************9977 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.083
                 HHHHHHHHHHHHHH CS
    PF04010.8 27 aaeevlemaesYle 40
                 a +++le+a sY+e
  MMETSP0890-20130614|35966_1 76 ARRKFLEAAISYYE 89
                 678999******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.89
# Mc/sec: 786.22
//
Query:       MMETSP0890-20130614|35972_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.86
# Mc/sec: 529.43
//
Query:       MMETSP0890-20130614|35979_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-08   33.9  10.1    1.6e-08   33.9   7.0    2.7  3  PF07496.10 CW-type Zinc Finger
  ------ inclusion threshold ------
        3.6    7.8   7.3       0.52   10.5   0.9    2.8  2  PF13408.1  Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> PF07496.10  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   7.0   2.4e-12   1.6e-08       1      46 [.     376     416 ..     376     419 .. 0.92
   2 ?   -2.8   0.2      0.72     5e+03       3       9 ..     426     432 ..     425     433 .. 0.80
   3 ?   -2.4   0.6      0.54   3.7e+03      27      41 ..     455     469 ..     447     470 .. 0.73

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 2.4e-12
                  SEEEE-TTT--EEEE-TTT----TTSS.---GGGSS-SSS-STTS- CS
   PF07496.10   1 eywVQCdkClKWRklpeeveeirsklpekWfCsmnpdkaynsCsap 46 
                  ++w+QC++C+KWR + +++      +++kW+C+++pd+a   C++p
  MMETSP0890-20130614|35979_1 376 QTWIQCEACEKWRPVSSNYI-----AHDKWTCKDHPDPAWACCDIP 416
                  58****************94.....578****************98 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.72
                  EEE-TTT CS
   PF07496.10   3 wVQCdkC 9  
                   V C kC
  MMETSP0890-20130614|35979_1 426 VVSCSKC 432
                  5899999 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.54
                  S.---GGGSS-SSS- CS
   PF07496.10  27 pekWfCsmnpdkayn 41 
                  +++++C + ++k+++
  MMETSP0890-20130614|35979_1 455 KSRYRCWNTQNKKFS 469
                  348999998888765 PP

>> PF13408.1  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.74     5e+03      39      47 ..     216     224 ..     182     238 .. 0.59
   2 ?   10.5   0.9   7.6e-05      0.52       6      36 ..     427     467 ..     424     482 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.74
    PF13408.1  39 Cdnksiree 47 
                   ++k+ir++
  MMETSP0890-20130614|35979_1 216 VQKKYIRYP 224
                  444444444 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 7.6e-05
    PF13408.1   6 lrCgeCGskmtr.......rkrk....gkkiyYrCsnyrkgg 36 
                  + C++CGs +          + +     kk++YrC n+++++
  MMETSP0890-20130614|35979_1 427 VSCSKCGSEFAAlgdhrglCT-TceppSKKSRYRCWNTQNKK 467
                  67*****99877665333322.14677788*******97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1037  (0.0758484); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.44s 00:00:01.44 Elapsed: 00:00:00.95
# Mc/sec: 1440.34
//
Query:       MMETSP0890-20130614|35986_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.1    6.0   8.8       0.12   11.6   0.6    2.1  2  PF14135.1 Domain of unknown function (DUF4302)


Domain annotation for each model (and alignments):
>> PF14135.1  Domain of unknown function (DUF4302)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   8.5e-06      0.12     124     198 ..      66     144 ..      39     190 .. 0.83
   2 ?   -2.1   1.2      0.13   1.8e+03       8      29 ..     280     301 ..     272     304 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.5e-06
    PF14135.1 124 eadkivlkgkksgnemvltlkkaedweaylekikevkdainr.knkykllv....ggekldltlssnarkivisydgkek 198
                  e+ + + ++ + +++m+l+ ++a ++ea+++++ke +++++  k+ +++++    +++ +   l+++++++ +s+ ++  
  MMETSP0890-20130614|35986_1  66 ERQRATAQKLRDETTMTLR-RSAANNEAAINEVKELRLEVTDlKGSLRIKEqeieKEQAVARKLRDENAELRTSSREQAN 144
                  5667788999*********.*********************886666666677778888888888888877777666554 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.13
    PF14135.1   8 espaeRleesleelkelLvsap 29 
                   +++ Rl+++ +e+++ L +a+
  MMETSP0890-20130614|35986_1 280 RTASRRLRDETKEARDKLREAE 301
                  5899**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2049  (0.149868); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                        58  (0.00424225); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.42u 0.41s 00:00:02.83 Elapsed: 00:00:01.34
# Mc/sec: 577.63
//
Query:       MMETSP0890-20130614|36003_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-13   48.8   6.7      1e-12   47.5   4.5    1.7  2  PF01585.18 G-patch domain
    9.2e-05   22.1   1.7    0.00018   21.1   1.2    1.5  1  PF12656.2  DExH-box splicing factor binding site
  ------ inclusion threshold ------
      0.016   14.4   0.2      0.021   14.0   0.1    1.1  1  PF02332.13 Methane/Phenol/Toluene Hydroxylase


Domain annotation for each model (and alignments):
>> PF01585.18  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   4.5   2.2e-16     1e-12       2      43 ..       6      50 ..       5      52 .. 0.90
   2 ?    0.0   0.0      0.15   6.7e+02      19      38 ..      48      70 ..      47      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 2.2e-16
   PF01585.18  2 sniGfkmLakmGWkpGqGLGkneqGivePieakikkdr...kGlG 43
                 +n+G+ mL kmGWk+G+GLGk++ G++ Pi a + k++   +G+G
  MMETSP0890-20130614|36003_1  6 ENKGYEMLLKMGWKQGKGLGKEQTGRTKPIIAAGLKNDrgrTGIG 50
                 79****************************998888885667776 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.15
   PF01585.18 19 GLG...kneqGivePieakikkd 38
                 G+G    ++  i++  eaki+ +
  MMETSP0890-20130614|36003_1 48 GIGvleAHQRAIANLEEAKIQLE 70
                 88888888889999999999865 PP

>> PF12656.2  DExH-box splicing factor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.2   3.9e-08   0.00018      33      73 ..       8      51 ..       5      57 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.9e-08
    PF12656.2 33 FGaAlLrGmGWkegqgigkkkkgsvkpeep...krRpkglGLGa 73
                  G  +L  mGWk+g+g gk+++g++kp++    k   ++ G+G+
  MMETSP0890-20130614|36003_1  8 KGYEMLLKMGWKQGKGLGKEQTGRTKPIIAaglKNDRGRTGIGV 51
                 5889********************98876511133344777776 PP

>> PF02332.13  Methane/Phenol/Toluene Hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.5e-06     0.021      73     129 ..      63     119 ..      51     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.5e-06
                  HHHHHHCTTHHHHHHHHCGGGHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02332.13  73 eklkrllgalryveygavmaeariarfalaatirnaavfqalDelrhlqleayflde 129
                  e++k+ l + r++e+  v +    +r +++a++r+ +++q+lDe rh+++ ++ + e
  MMETSP0890-20130614|36003_1  63 EEAKIQLEQERMNEFRNVLKFTATCRAVTKAALRARHAIQTLDERRHITRHILWPSE 119
                  6677778888999999999999****************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       535  (0.0391311); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.42s 00:00:00.84 Elapsed: 00:00:00.65
# Mc/sec: 527.20
//
Query:       MMETSP0890-20130614|35996_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-23   80.6   0.2    1.4e-22   79.5   0.2    1.6  1  PF01412.13 Putative GTPase activating protein for Arf
    1.7e-08   34.5   0.3    8.9e-08   32.2   0.1    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    4.3e-07   29.8   0.4    1.4e-06   28.1   0.3    2.0  1  PF13857.1  Ankyrin repeats (many copies)
    3.6e-06   27.2   0.1    1.4e-05   25.3   0.0    2.1  1  PF13637.1  Ankyrin repeats (many copies)
    1.6e-05   24.3   0.7    0.00072   19.1   0.2    2.6  2  PF00023.25 Ankyrin repeat
     0.0015   18.5   0.0     0.0042   17.1   0.0    1.8  1  PF00169.24 PH domain
     0.0025   17.7   0.1      0.032   14.3   0.0    2.7  2  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.2   7.2e-26   1.4e-22       7     109 ..     449     554 ..     443     561 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 7.2e-26
                  HCC.SGGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH-.--HHHHHHHCCC.TTTS---TTTCGHHHHHHHHHHHHT CS
   PF01412.13   7 llk.epenkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkel.gNkkaneileak.sekskkiksesdkekreefirakYe 109
                  +++  ++n vCa+Cga+  +W+ + +g+ lC++C+ +hr+lg ++s+ + l +d+w++  l+ l +  gN+k+n+++e++  + ++k+++++  +++e +i akY+
  MMETSP0890-20130614|35996_1 449 IRNfVKANPVCAECGASRIEWVATAIGCALCVDCATIHRKLGASCSNLRALFMDSWSSVMLDYLLRAsGNEKVNAVWEHSvPRGWHKPSADAPLHEKEMWIVAKYV 554
                  4554579******************************************************9765554************7556777777788888889******7 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   2.7e+03      57      81 ..      28      52 ..      12      58 .. 0.77
   2 !   32.2   0.1   4.6e-11   8.9e-08      23      79 ..     649     710 ..     622     714 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.4
    PF12796.2 57 kegntpLhlAvrnghlelvklLlek 81
                  +++t+  +A+ ++   + ++L e+
  MMETSP0890-20130614|35996_1 28 TKKWTAAQAAADAEARRVSEWLRER 52
                 3579999999999999999999876 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 4.6e-11
    PF12796.2  23 vdl.getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvr....nghlelvklLl 79 
                  ++  ++++Lh+Aa agn+++v +L+ +g d  ++d++g tpL lA +    +  + +++l+l
  MMETSP0890-20130614|35996_1 649 PNNrSRSALHVAALAGNVDAVAFLILNGGDSHQQDADGATPLSLASSatdgKAAVAVAQLIL 710
                  3324455**************************************98333333344555555 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.3   7.4e-10   1.4e-06      12      56 .]     649     693 ..     638     693 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 7.4e-10
    PF13857.1  12 tdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                   +++++++Lh+Aa +g++++v +L+ +g d + +d+dg t+l lA
  MMETSP0890-20130614|35996_1 649 PNNRSRSALHVAALAGNVDAVAFLILNGGDSHQQDADGATPLSLA 693
                  344445************************************998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.2e-09   1.4e-05       2      44 ..     654     696 ..     653     709 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 7.2e-09
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalr 44 
                  ++aLh+aa +g++++v++L+ +g d +++d++G t+L +A ++
  MMETSP0890-20130614|35996_1 654 RSALHVAALAGNVDAVAFLILNGGDSHQQDADGATPLSLASSA 696
                  69***********************************999876 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   3.7e-07   0.00072       4      32 ..     655     683 ..     653     684 .. 0.94
   2 ?    2.8   0.0     0.052     1e+02       1      12 [.     685     696 ..     685     711 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.7e-07
                  BHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   4 TPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  ++LH+Aal gn++ v +L+ +G d + qd
  MMETSP0890-20130614|35996_1 655 SALHVAALAGNVDAVAFLILNGGDSHQQD 683
                  79**********************99998 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.052
                  TSCBHHHHHHHT CS
   PF00023.25   1 dGfTPLHlAalr 12 
                  dG TPL lA++ 
  MMETSP0890-20130614|35996_1 685 DGATPLSLASSA 696
                  89*******975 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.1e-06    0.0042       2     103 ..     314     428 ..     313     429 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.1e-06
                  SBEEEEEEEE.............TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGEEEEEEEETTSS.C....TTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   2 ikeGyllkks.............ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfa.l....qkesnnyfeitfkdvesyllsaeseeerkrWvqalknll 103
                   k+Gyl+++               +  + ++r+  L++  L++  ++      +  +  +l +ctv +        l    +  + ++f ++ +d+++ +l+a++++e+ +W++al++++
  MMETSP0890-20130614|35996_1 314 LKQGYLHRRDldstsitglvrglTSHARQRRRWHRLHNCALYVVADDG-----DETKLCDLAGCTVHRGAGAWRPgLdtqiTGATIFSFALVQPDGHRMILQADNQDELIKWISALRRST 428
                  588888888888888888888877777778888888888888777776.....7889999999999888886432414457999********************************9876 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.6e-05     0.032       3      27 ..     654     678 ..     652     680 .. 0.92
   2 ?   -0.7   0.0       1.2   2.3e+03       1      21 [.     685     709 ..     685     712 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-05
    PF13606.1   3 nTpLhlAasngrielveaLlengad 27 
                  +++Lh+Aa  g++++v +L+ ng d
  MMETSP0890-20130614|35996_1 654 RSALHVAALAGNVDAVAFLILNGGD 678
                  789*****************99865 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.2
    PF13606.1   1 nGnTpLhlAas..ngr..ielveaL 21 
                  +G TpL lA s   g+  ++++++ 
  MMETSP0890-20130614|35996_1 685 DGATPLSLASSatDGKaaVAVAQLI 709
                  688******8833233114555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:00.71
# Mc/sec: 2413.23
//
Query:       MMETSP0890-20130614|36012_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 246.48
//
Query:       MMETSP0890-20130614|36024_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.39s 00:00:01.03 Elapsed: 00:00:00.66
# Mc/sec: 1158.24
//
Query:       MMETSP0890-20130614|36036_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.67
# Mc/sec: 196.72
//
Query:       MMETSP0890-20130614|36046_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       447  (0.0326946); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:00.86
# Mc/sec: 323.23
//
Query:       MMETSP0890-20130614|36049_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-33  113.3   0.0      2e-31  108.3   0.0    2.1  2  PF03813.9 Nrap protein


Domain annotation for each model (and alignments):
>> PF03813.9  Nrap protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0     0.001        14     550     628 ..      24     100 ..      12     102 .. 0.68
   2 !  108.3   0.0   1.5e-35     2e-31     669     970 ..     120     462 ..     112     464 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.001
    PF03813.9 550 sasslvdv..vlqfesSgkWP..delaAiqktKiAFllkiaekLeaskkkeikskvgleesvsenenlafLdvltpegylFrl 628
                  + ++++++  +  fe S+kW   +  +A   + +A+l ++a+kL+++ +   + ++     + +  + + L + +  g+lFr+
  MMETSP0890-20130614|36049_1  24 NNNQIIEIllIARFERSAKWItlETQTARSAAATALLARLARKLATDDS--LANHLR---FIAFATDSNELRIGF-AGFLFRI 100
                  4444444411669*******7325677888999***********95544..443333...377888888888888.7888887 PP

  == domain 2    score: 108.3 bits;  conditional E-value: 1.5e-35
    PF03813.9 669 pkhtraietlatrfplysptvrLlKrWldshllsshlseelvELlvlkvFlqpa..........pwkapssvetGFlrvLeflsrwdWreepLildlvekltseeieeieknfealRkidpamnktalfvatkqd..........ksGilwt..kekpskvvaaRltaLAkaavklikeegl.....neldvelLFtpslkeYdfvik.lksklllkssskikssskfknlseeeskeklped..............sakvdpvalfvkeLkkkYgdsilffsdkededvigglwnpqalkkkkfkvnlglnvkpve.......keevelnkeaileeiarlgkdLvesie 970
                    h+++i+ l+ ++p ++pt+rLl rW +s+llssh+s e+ ELl++ vF++p+          +   p s+ +GFl +L++l + dW+++pL l l + + +++++ + +  + +  +       +l +++ +d           +  +wt  ++kp+++v+    a Ak++ +l+++e++     ++  +e++F ++ +   ++ + +++ l++++s+++++++ + nl++ +++  + +d               +  + v  +v+eL ++++d++lff+++ + + ig++w+p+   ++++ +     ++p e          v+ n ++il +i++l++dLv+ ++
  MMETSP0890-20130614|36049_1 120 AVHHSTIRALTAKYPGLAPTIRLLARWSASQLLSSHFSHEILELLAVAVFISPSfadahdclgfATAPPISPVSGFLSCLRLLWKRDWSTKPLFLALRQAVAASSEHLLWSPPKTSPPQ------YPLSIVAGYDddffqdnakrAQAAAWTglSKKPELPVLRLAQAAAKNTERLVSQENIsfkdeDDAVLESIFGAGAATGRVTKRtFDAWLVVRKSQRKSHKKVYANLDNPAARLAFATDrteavldpalspfeYSRQHAVDNLVRELISCFNDVALFFYNHLEPSIIGIVWRPNK--PQPLATMQSAYTQPAEspdpkddRIYVQPNFDQILVDIRQLAGDLVTAVK 462
                  4699************************************************97333333333345679***************************98777777666655444443332......333333333324555555558999**************9999***********77777776688899*******9999988752566667777777788889****9988887766666777888888888844444567********************************85..57788778888888888889843344566*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.81
# Mc/sec: 1428.94
//
Query:       MMETSP0890-20130614|36053_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-10   40.2   0.1      5e-10   39.1   0.1    1.5  1  PF01323.15 DSBA-like thioredoxin domain
  ------ inclusion threshold ------
       0.18   11.7   1.9       0.38   10.7   1.0    1.8  2  PF06579.7  Caenorhabditis elegans ly-6-related protein


Domain annotation for each model (and alignments):
>> PF01323.15  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   7.3e-14     5e-10       9     156 ..      51     229 ..      40     247 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 7.3e-14
                  TBHHHHHHHHCHHHHCCCC........-SEEEEEEE-ST---TTT.....GGG.......................STT...HHHHHHHHHHHHHT......TTCCTHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHTST---SSHHHHHHHHHH----HHHHHHHCTSHHHHHHHHHH CS
   PF01323.15   9 lCPyCylgkerleklaars........pdvkvvlrpfelagakkasgnvgpse.......................lpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavren 156
                  +CPy y+gk   e+++            +v+v+ +pf+l g  ++ + ++                            e+ ++l +d+k  +e+ g+ + f+ +   +  +a+r++ +ag+ g++e +v +l+++ ++  q +  + +ll++a+++ ld ++ld++l++e+ ++ v  n
  MMETSP0890-20130614|36053_1  51 ICPYAYIGKLHAERAIDFFhkkykdmaLEVRVRRYPFSLNGPHRQYEKKTSLPgygqysqgkeprwhdallsycknDHEEREALEDDIKLAGEEVGLHIDFNVQVHWQPVDAHRAIWYAGRFGKQEIYVDALAKRHFELCQSVVHRVTLLRAAKDVDLDFKALDRLLNTEEMIDNVWHN 229
                  8********99999887668899*99889*************87666664443889999****************8888999999****************999856***************************************************************999887655 PP

>> PF06579.7  Caenorhabditis elegans ly-6-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   5.5e-05      0.38      11     102 ..     316     403 ..     309     422 .. 0.70
   2 ?    0.0   0.1      0.11   7.2e+02      38      62 ..     372     396 ..     354     458 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.5e-05
    PF06579.7  11 kslsriykkPknFtdrCrdeeleegkvpsvaCstiCvtlvedldveggvsrakgyiRGClsdvllfGfnqsvlrtlsaleeesvCrdlsake 102
                  ++ s+iy++P++F ++C+ ++ ++++    + ++ Cv   +d+ +++  + +      C  +   +    s+ +  ++ e++++  +ls ++
  MMETSP0890-20130614|36053_1 316 NKESHIYHHPRTFWNNCNSNDEDIST--EEKDTSKCVHNDDDISIATASTDTTSTKTTCSTRA--HTITVSIKEKDNVSENTTIQSKLSTRD 403
                  5568*************999988884..34667899999999999998777777777776665..555555555555555555555555555 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.11
    PF06579.7  38 psvaCstiCvtlvedldveggvsra 62 
                   s+  +ti v++ e+ +v ++++ +
  MMETSP0890-20130614|36053_1 372 CSTRAHTITVSIKEKDNVSENTTIQ 396
                  3344466777777776776665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       881  (0.0644383); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.39s 00:00:01.27 Elapsed: 00:00:00.85
# Mc/sec: 1434.99
//
Query:       MMETSP0890-20130614|36060_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.009   15.1   0.2     0.0095   15.1   0.1    1.0  1  PF11593.3 Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> PF11593.3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.9e-07    0.0095     326     369 ..      28      71 ..       9      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.9e-07
    PF11593.3 326 mslnldfdlqqqqqpqqaqsqnqqnmnmrmndvnnfdllDlnnL 369
                  + ++ + ++qqq ++ +++sq+ +  n   ++ +n d+lDl++L
  MMETSP0890-20130614|36060_1  28 IQMSTGRKHQQQRSQYSIESQDPDRLNSFSENFENIDSLDLTQL 71 
                  556788889999999999888888887777***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       473  (0.0345963); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 263.26
//
Query:       MMETSP0890-20130614|36062_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.6    6.5  14.2       0.17    9.7   5.3    1.9  2  PF02724.9  CDC45-like protein
        2.1    7.8   4.6       0.97    8.9   1.3    1.8  2  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3     0.011        77     134     152 ..      31      49 ..       5      71 .. 0.55
   2 ?    9.7   5.3   2.5e-05      0.17     133     195 ..     121     182 ..      94     194 .. 0.48

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.011
    PF02724.9 134 esdedsdseddeeeeessa 152
                  e+d+d d++dd ++++  +
  MMETSP0890-20130614|36062_1  31 EEDDDTDTDDDVQDSPDTE 49 
                  2222222222222222221 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 2.5e-05
    PF02724.9 133 eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrr 195
                  +++ ++s +  d+e+++ssas+k++  s+e   dd+ ++ +d ++r+r+++ ++++s++r+rr
  MMETSP0890-20130614|36062_1 121 DDQRSNSKNLHDDEDRSSSASNKSNIASSERVLDDSGSDIDDHRARRRHRH-KSSRSKKRSRR 182
                  333333333344444444444444444444444444444444444544444.33344444333 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3   0.00014      0.97       8      28 ..       9      29 ..       8      30 .. 0.94
   2 ?   -2.3   0.0      0.45   3.1e+03       2       9 ..     100     107 ..      99     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00014
                 HHHHHHHHTT------HHHHH CS
   PF02037.22  8 eLKaeLkkrGLptsGkKaeLi 28
                 +LK++++++GL+++ ++ eL 
  MMETSP0890-20130614|36062_1  9 QLKDKAAELGLKSGTLRPELL 29
                 8******************97 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.45
                  TT--HHHH CS
   PF02037.22   2 skltVaeL 9  
                   k tV++L
  MMETSP0890-20130614|36062_1 100 AKKTVDDL 107
                  6889*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.71
# Mc/sec: 695.28
//
Query:       MMETSP0890-20130614|36061_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-15   56.2   0.0    4.5e-15   55.2   0.0    1.5  1  PF01398.16 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
      0.061   12.7   0.1        0.2   11.1   0.0    1.9  2  PF14464.1  Prokaryotic homologs of the JAB domain


Domain annotation for each model (and alignments):
>> PF01398.16  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   6.6e-19   4.5e-15       3     111 ..      22     149 ..      20     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 6.6e-19
   PF01398.16   3 vqavhleslvllkildhalrteke.........evmGlliGelnddt..tveitnvfalprsetekdvdaveldqeekksellkklr.gr.ervVGWYhshp......hitvwlshvdvrtqamyqmm 111
                  +++v++++ +  k+l ha  + +e         evmG+++G    +      + +vf lp+ + e++v+a+++  ++ ++el ++++  r er  GWYhshp      h  ++ls++d+ tq ++q  
  MMETSP0890-20130614|36061_1  22 FRRVMISPTASVKMLSHAYAGCEEgmrsggkplEVMGMCLGCPHPEVkdAFVVSDVFPLPVTGFETRVVADDESVINYMIELSEMVEkSRkERLMGWYHSHPfdidesHNHCFLSSTDLSTQLAWQNA 149
                  689**************************************877665556679********************999777777666665456**********8666666789***********999976 PP

>> PF14464.1  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05       0.2      15      88 ..      51     156 ..      37     176 .. 0.66
   2 ?   -2.7   0.0      0.58     4e+03      72      87 ..     192     207 ..     189     222 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.9e-05
    PF14464.1  15 eypeEacglllgke..ekeevivvpvlnpdpedslaaakf................earekglevvgiwHSHP......ggsarPSetDrasaeala........g 88 
                   +p E +g+ lg    e  +  vv+ + p p   +++  +                 +  +++++ g +HSHP      +++ + S+tD+++  a+         +
  MMETSP0890-20130614|36061_1  51 GKPLEVMGMCLGCPhpEVKDAFVVSDVFPLPVTGFETRVVaddesvinymielsemVEKSRKERLMGWYHSHPfdidesHNHCFLSSTDLSTQLAWQnaedpngnP 156
                  57888888888888874444444444454454444444444555666667777877778899***********666543233377777777766665556655544 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.58
    PF14464.1  72 sarPSetDrasaeala 87 
                  ++ +S+ D++s ++++
  MMETSP0890-20130614|36061_1 192 APDFSAVDDESTSKTV 207
                  5689999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.41s 00:00:01.09 Elapsed: 00:00:00.72
# Mc/sec: 1321.32
//
Query:       MMETSP0890-20130614|36067_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   40.4   0.1    1.3e-10   40.3   0.1    1.0  1  PF00368.13 Hydroxymethylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> PF00368.13  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   9.5e-15   1.3e-10      70     156 ..       3      96 ..       1      98 [] 0.90

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 9.5e-15
   PF00368.13  70 tEgalVAsanrgakairesgGvktvvlkdgmtrapvvrfesveeaaelkawieenfeelkeaae.....stsrfgklkkievvi....agrlvylr 156
                  +E+++VA+a+++ak ++  gG++t++ +++m+ ++ +r  +v + +++ ++ie++ eel+++ +     +++r+g+++ +e+      +g  v+++
  MMETSP0890-20130614|36067_1   3 EEASVVAAASNAAKRCHVHGGFRTSIDDPIMIAQIELR--DVISGSDVVHKIEAHSEELRKICNeamssMVKRGGGFRGVEARAleslSGPIVIVH 96 
                  8**********************************999..************************9999999*********9954355566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       400  (0.0292569); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 340.35
//
Query:       MMETSP0890-20130614|36068_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-71  240.1   0.0    3.2e-71  239.9   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.9   0.0   2.3e-75   3.2e-71       4     254 ..      49     300 ..      46     301 .] 0.97

  Alignments for each domain:
  == domain 1    score: 239.9 bits;  conditional E-value: 2.3e-75
                  -S-SE.EEEEETTTEEEEEEEE---HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEE.CTTEEEEEEEEE---EEEEE-SSSHHHHHHHHHHHHHH----EEEEE-TTSSHHHHHHHHHHHHHTS----EEE-----HHHH-TTCC-TT-SEEEE--------HHHHHHHTTT-EEEEE----EEEEE-TTS-HHHHH CS
   PF00171.17   4 seset.ievinPatgeviakvaaataedvdaavaaAkaafkawaklpaeeRaeilrkaadlleerrdelaelevletGkplaearaevaeaidvlryyagaaeklegevlps.segkkalvrrePlGvvaaitPWNfPlllaawklapalaaGNtvvlKpseetpltalllaelleeaglPkgvlnvvtgsgsevgealvehpdvdkvsftGstevgrkiakaaaknlkkvtlElGGkspliVledaDldkav 254
                  s+s++ ++vinPatg+++  v+++t+++++aav +A++af+ w+++++++R++++ + ++l++er+del +++v e+Gk++a+a+++v + ++v++ ++++ +++ ge+l++ + g  ++ ++ePlG++a i+P+NfP++++ w++   + +GNt +lKpse++p  +++lae++ +aglP+gvlnvv+g  + v + l+++p+++++sf+G+ + g+ i ++a+++ k++++ lG k++ ++l+daD +k++
  MMETSP0890-20130614|36068_1  49 SKSKEiLPVINPATGQILRYVPESTEDELEAAVHSAREAFSMWRDTSVSKRSRVMFEYQRLIREREDELVQAIVEENGKTIADAKGDVFRGLEVVEQCCALGNHMMGETLANaAIGIDTYSYKEPLGICAGIAPFNFPAMIPLWMFPVGITCGNTYILKPSEKVPSATMILAEMALQAGLPPGVLNVVHG-TKPVVDFLCRAPEIKAISFVGGNKAGEYIFAEATRHGKRCQANLGAKNHGVILPDADKEKTL 300
                  4566669******************************************************************************************************999779***************************************************************************.6779*****************************************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.67
# Mc/sec: 1076.57
//
Query:       MMETSP0890-20130614|36076_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       156  (0.0114102); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.57
# Mc/sec: 314.01
//
Query:       MMETSP0890-20130614|36081_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 300.39
//
Query:       MMETSP0890-20130614|36092_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       768  (0.0561732); expected 273.4 (0.02)
Passed bias filter:                      583  (0.0426419); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.74
# Mc/sec: 330.31
//
Query:       MMETSP0890-20130614|36100_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.0   0.0    2.5e-05   24.0   0.0    1.5  1  PF09229.6  Activator of Hsp90 ATPase, N-terminal
  ------ inclusion threshold ------
      0.098   12.2   0.1       0.18   11.4   0.0    1.4  1  PF01108.12 Tissue factor


Domain annotation for each model (and alignments):
>> PF09229.6  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.7e-09   2.5e-05       2      87 ..     101     196 ..     100     213 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.7e-09
                  EE-HHHHHHHHHHHHHT-EE.E-SSEEEE..EEEEE.EE-EEEEEE----EEEEEEEEEEEEEEEE..........ETT---EE----EEEEEEECCC CS
    PF09229.6   2 Kdatkwakeklkellknlkvkedeeskik..itevskveGdasvsqrKGKkiflfelklklewege..........kkeeeekkvkGtveipelssen 87 
                  Kd++   + kl+++  +++   ++  ++   i+++s+v+  +sv+  + K  +++el++ ++w++e          ++++e + ++G+v + ++s+e+
  MMETSP0890-20130614|36100_1 101 KDFSHSFQRKLETINVHVDLPGGSHVRVDqfIQSLSNVS--VSVTEKRAKRSLYYELDIHFTWTAEpppsfdlspqENNDEPHPIEGQVRLYNVSHET 196
                  555555566666666665554444444444577777555..79999****************************98777777**************95 PP

>> PF01108.12  Tissue factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.18      16      65 ..     173     221 ..     160     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.6e-05
                  XXXX-S-SSSEEEEEEEETTEEEEEEE-.TTSSTTEEEEEEEETCEEEEE CS
   PF01108.12  16 taataelpkPqnvqfqsrnfkniLsWepgsaspesvvYtVqykmkssrqw 65 
                   ++  + p P + q++++n+ +  ++epg + +  + Y++ yk   +++w
  MMETSP0890-20130614|36100_1 173 PQENNDEPHPIEGQVRLYNVSHETHYEPGADPNVAYMYQLAYK-GLRSEW 221
                  5666777899999******************9***********.666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       910  (0.0665594); expected 273.4 (0.02)
Passed bias filter:                      555  (0.0405939); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.64
# Mc/sec: 951.05
//
Query:       MMETSP0890-20130614|36099_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-14   52.0   0.0    1.1e-13   50.7   0.0    1.7  1  PF00439.20 Bromodomain
  ------ inclusion threshold ------
       0.98    8.7   4.6        3.5    6.9   0.1    2.4  2  PF02224.13 Cytidylate kinase


Domain annotation for each model (and alignments):
>> PF00439.20  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.6e-17   1.1e-13       2      78 ..     197     271 ..     196     277 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.6e-17
   PF00439.20   2 eqilndlqehklastFsapvdakeapdYydiikrPidLktIqkklasgkyqslaqfekdlelvfsNavkyneegsdv 78 
                  e++++ l + +  + F  pv+++ ap+Y+ iik+P+dL t+++k+  g y+s+ +fe d++ +++N++k+n++  + 
  MMETSP0890-20130614|36099_1 197 EEVWTCLTKADPQHFFAFPVSDEIAPGYSRIIKEPMDLGTMRSKI--GRYKSVNEFEIDVKKIVDNCKKFNGSVGPF 271
                  67788888888888899899***********************88..78**********************975555 PP

>> PF02224.13  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1   0.00051       3.5      83     124 ..      11      52 ..       8      86 .. 0.79
   2 ?    2.6   0.6     0.011        72      95     140 ..     405     453 ..     400     466 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00051
                  EEEEEE--HHHHHHHHHHHHHH------HHHHHHHHHHHHHH CS
   PF02224.13  83 lKiFLtAsvevRakRRlkqlkekgsevkleellaeikeRDkl 124
                  +K+++ A  e R +R ++q+ +   +++  +l a + +R +l
  MMETSP0890-20130614|36099_1  11 IKLYVCAHSESRCRRTVAQFMNDWAKHSVPTLRAALHARRSL 52 
                  8*********************99999999999998877543 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.011
                  HHHHHHHHHH------HHHHHHHHHHHHHHHHCSS....SS-S---TT-E CS
   PF02224.13  95 akRRlkqlkekgsevkleellaeikeRDklDsera....vdpLkkaedal 140
                  a R  +q+++k++e    +lla + e D++D++ a    +dpL++ +d +
  MMETSP0890-20130614|36099_1 405 ASRQQEQRSRKKQE-VRSNLLAALTEDDAHDNKMAdedhHDPLQPVSDLM 453
                  77888888887766.568999**********8754222277888777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:00.63
# Mc/sec: 1875.24
//
Query:       MMETSP0890-20130614|36125_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.4   0.0      0.075   12.4   0.0    1.5  1  PF03020.10 LEM domain


Domain annotation for each model (and alignments):
>> PF03020.10  LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-06     0.075       9      40 ..      50      79 ..      43      82 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.5e-06
                 HHHHHHHCCTT---------TCHHHHHHCCHH CS
   PF03020.10  9 aELrseLrkyGispGPitgtTRkLYeKKLlkl 40
                   Lr+ L  yG+s+  it+  Rk+Ye+++  l
  MMETSP0890-20130614|36125_1 50 NSLRQVLIDYGASH--ITSEQRKVYERQMVHL 79
                 45************..***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.49s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 1086.35
//
Query:       MMETSP0890-20130614|36128_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-10   37.6   0.8    1.1e-07   30.9   0.0    2.1  2  PF04912.9 Dynamitin
  ------ inclusion threshold ------
      0.011   16.0   6.3       0.14   12.4   1.9    2.2  2  PF11716.3 Mycothiol maleylpyruvate isomerase N-terminal domain
      0.052   12.7   0.0      0.058   12.5   0.0    1.2  1  PF10390.4 RNA polymerase II elongation factor ELL


Domain annotation for each model (and alignments):
>> PF04912.9  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0011       5.1      79     143 ..      39      89 ..      28     133 .. 0.80
   2 !   30.9   0.0   2.4e-11   1.1e-07     312     365 ..     160     214 ..     154     215 .] 0.91

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0011
    PF04912.9  79 yeilgedeseketpvqklqrlqtevaeLleelqaiqsdskeskeekistvalaevvetlkkqles 143
                  y+ +       e p  kl rlq e+a+L+ el++         e ++s  +++++ve+l   le 
  MMETSP0890-20130614|36128_1  39 YDQVFR-----EPPRAKLARLQREAAQLRAELEE---------ESPQSSLNILHQVEDLLLSLER 89 
                  555555.....89999****************98.........5566666677777666655555 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 2.4e-11
    PF04912.9 312 eqlPa.vveRlktLksLHeeasefsqslaelektqekieseLasnkelleevdes 365
                  e+lPa +v Rl +L+sLHe++ ef++ l ++e  q+ +   L sn e++ ++ ++
  MMETSP0890-20130614|36128_1 160 ESLPAlLVTRLAALRSLHEQGFEFANRLRAVELEQMALRRTLVSNDEVMSRLAKN 214
                  789973589****************************************998765 PP

>> PF11716.3  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0047        21      71     106 ..      36      71 ..       5      77 .. 0.80
   2 ?   12.4   1.9   3.1e-05      0.14      31     120 ..      80     174 ..      78     193 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0047
                  HHHHH----S-HHHHHHHHHHHHHHHHHHHHT--TC CS
    PF11716.3  71 aeavdlaaslapeallaafraavtrlaaalaalppd 106
                  +   d+  + +p a la++++++++l+a+l++ +p+
  MMETSP0890-20130614|36128_1  36 RKKYDQVFREPPRAKLARLQREAAQLRAELEEESPQ 71 
                  555667778999******************998876 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.1e-05
                  HHHHHHHHHHHHHHHHHHHHH..HH------.SSS.-HHH....HHHHH----S-HHHHHHHHHHHHHHHHHHHHT--TCGGG-EE.E-----EE CS
    PF11716.3  31 vadlvaHlarsaralaaalageaaesglardaaaplvtaa....aeavdlaaslapeallaafraavtrlaaalaalppdaradtl.giplgprs 120
                  v dl++ l r a+ l a +++++ + ++ar+a+a++++ +       +++  s +++a laa  +  +++a+ la++pp +  + l +++l + +
  MMETSP0890-20130614|36128_1  80 VEDLLLSLERIASGLPAQIPAPDSSIEEARTAMAAVTQGVqtraSVSITENLSTSDDATLAASLGVGPETATLLAEAPPNESLPALlVTRLAALR 174
                  7788888889999999999***************98888899999999**********************************9999877776665 PP

>> PF10390.4  RNA polymerase II elongation factor ELL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.058      81     148 ..      67     135 ..      54     213 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
    PF10390.4  81 qdkpegsldcvqqsqgnqLqslGsiqhkl..rihAtdDsyqktrermaqaeeeeksketkeikpnqkdig 148
                  +++p+ sl+ ++q  ++ L sl +i   l  +i A d s++++r+ ma++++  + + + +i++n ++++
  MMETSP0890-20130614|36128_1  67 EESPQSSLNILHQ-VEDLLLSLERIASGLpaQIPAPDSSIEEARTAMAAVTQGVQTRASVSITENLSTSD 135
                  68999********.9999*******9876559*****************************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.46s 00:00:00.90 Elapsed: 00:00:00.81
# Mc/sec: 636.07
//
Query:       MMETSP0890-20130614|36134_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.61
# Mc/sec: 219.99
//
Query:       MMETSP0890-20130614|36143_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.6   1.7     0.0024   17.6   1.2    2.4  2  PF10814.3  Protein of unknown function (DUF2562)
     0.0067   17.0   0.8     0.0067   17.0   0.5    3.9  3  PF00639.16 PPIC-type PPIASE domain
  ------ inclusion threshold ------
      0.048   13.8   1.9      0.048   13.8   1.3    4.6  4  PF14182.1  YgaB-like protein
      0.058   12.4  37.8      0.051   12.6   7.7    3.9  4  PF13851.1  Growth-arrest specific micro-tubule binding
       0.45   10.0   6.8      0.075   12.5   1.5    2.0  2  PF00052.13 Laminin B (Domain IV)
       0.55    8.7  41.6        1.1    7.7  15.7    2.7  3  PF09731.4  Mitochondrial inner membrane protein
       0.67    9.4   7.5        1.7    8.1   0.4    3.5  3  PF04253.10 Transferrin receptor-like dimerisation domain
       0.96    9.4   6.0       0.14   12.0   0.3    2.4  3  PF11022.3  Protein of unknown function (DUF2611)
        1.3    9.3  28.0        2.6    8.3   1.0    5.1  5  PF04102.7  SlyX
        1.8    7.9  44.6       0.24   10.8   9.6    3.2  1  PF04156.9  IncA protein
        1.9    7.8  29.9        1.3    8.3   5.6    3.8  3  PF13870.1  Domain of unknown function (DUF4201)
        2.3    7.2  24.5       0.15   11.0   1.5    3.3  3  PF04582.7  Reovirus sigma C capsid protein
        4.2    6.7   8.9       0.98    8.7   0.8    2.7  3  PF13421.1  SPFH domain-Band 7 family
        6.5    4.5  14.4       0.73    7.6   4.2    2.1  2  PF10136.4  Site-specific recombinase


Domain annotation for each model (and alignments):
>> PF10814.3  Protein of unknown function (DUF2562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.22   2.2e+02      41      85 ..      59     103 ..      37     127 .. 0.70
   2 !   17.6   1.2   2.5e-06    0.0024      35     111 ..     196     275 ..     182     293 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.22
    PF10814.3  41 rrryregklarelaaaqetlaqelaaaqevvanlPealqearrkr 85 
                  +  y+   ++ ++aa + t++   +a  +   +l +al++ +++r
  MMETSP0890-20130614|36143_1  59 QAMYELKEIKEQFAAQKCTMSDLCSAKSDLEEQLTKALEQDHQAR 103
                  445666677777766666666655666677777888877665554 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.5e-06
    PF10814.3  35 staaelr..rryre..gklarelaaaqetlaqelaaaqevvanlPealqearrkrrrkkrplllagvavavlagGavafsi 111
                  +ta + r  ++y +   kl  +l a ++  a+elaaaq+ + +l e+lq++ ++r+ + r  l +     ++ag  + +s 
  MMETSP0890-20130614|36143_1 196 TTARKEResKKYDKdtEKLVTDLLAENQKKAKELAAAQKQINDLTESLQKSEAARKATLRANLDT-SQKEIVAGENAVLSS 275
                  455444411567542268999******************************99999977766544.455666666665554 PP

>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.049        48      10      43 ..      54      87 ..      28      95 .. 0.67
   2 !   17.0   0.5   6.8e-06    0.0067      11      75 ..      97     161 ..      91     171 .. 0.91
   3 ?   -0.5   4.2         2   1.9e+03       5      32 ..     221     248 ..     182     265 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.049
   PF00639.16 10 eeekeeakakaeelleqlksgedtFaelakeySd 43
                  ee ++a  +++e++eq  +++ t+++l    Sd
  MMETSP0890-20130614|36143_1 54 HEEIAQAMYELKEIKEQFAAQKCTMSDLCSAKSD 87
                 3556666666666666666666666666666663 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 6.8e-06
   PF00639.16  11 eekeeakakaeelleqlksgedtFaelakeySddkssakngGdLgwfergqlppefekavfslke 75 
                  e++ +a+a+++e+++q+ ++++t ael  +  +d+s++ +  d+++ ++++l pe+e+ +++l+ 
  MMETSP0890-20130614|36143_1  97 EQDHQARAELNEVRAQITTQNSTIAELECQLTTDASKEVKSNDVQDSTQETLIPELESTIADLRA 161
                  68899*******************************************************99985 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 2
   PF00639.16   5 ktkeseeekeeakakaeelleqlksged 32 
                  +++++ +e ++a++++++l e l++ e+
  MMETSP0890-20130614|36143_1 221 ENQKKAKELAAAQKQINDLTESLQKSEA 248
                  4444667777788888888888887776 PP

>> PF14182.1  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.3   4.9e-05     0.048      30      66 ..      38      74 ..      24      76 .. 0.90
   2 ?    6.7   2.3    0.0078       7.6       9      63 ..      74     127 ..      72     139 .. 0.82
   3 ?    1.7   0.1       0.3   2.9e+02      31      67 ..     137     170 ..     123     179 .. 0.69
   4 ?    0.4   3.2      0.72   7.1e+02      28      72 ..     201     245 ..     175     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.9e-05
    PF14182.1 30 ekellelekeaelesiqeeIsqkkkeLkeiqelFekQ 66
                 e+ ++++++++++ +++eeI+q   eLkei+e F  Q
  MMETSP0890-20130614|36143_1 38 EACEQSTTQDSTIADLHEEIAQAMYELKEIKEQFAAQ 74
                 667889999*************************998 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0078
    PF14182.1   9 QlktmdkLLklQselercqeiekellelekeaelesiqeeIsqkkkeLkeiqelF 63 
                  Q  tm  L    s+le  q +++ +++ +  ael++++++I++++  ++e++   
  MMETSP0890-20130614|36143_1  74 QKCTMSDLCSAKSDLEE-QLTKALEQDHQARAELNEVRAQITTQNSTIAELECQL 127
                  55689999999999996.5667777889999****************99998655 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.3
    PF14182.1  31 kellelekeaelesiqeeIsqkkkeLkeiqelFekQT 67 
                  ++ +   ++++ e++  e++ +  +L+  ++lFe+Q 
  MMETSP0890-20130614|36143_1 137 SNDV---QDSTQETLIPELESTIADLRAANDLFESQV 170
                  3333...3344455567889999999999*****996 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.72
    PF14182.1  28 eiekellelekeaelesiqeeIsqkkkeLkeiqelFekQTeevIr 72 
                  e e++  ++  e+ ++++ +e ++k keL+  q+  ++ Te++ +
  MMETSP0890-20130614|36143_1 201 ERESKKYDKDTEKLVTDLLAENQKKAKELAAAQKQINDLTESLQK 245
                  455666666777778899999999999999999998888887755 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.35   3.4e+02      40      68 ..       5      33 ..       2      48 .. 0.75
   2 ?    6.7   5.6    0.0033       3.2      28     108 ..      49     126 ..      33     146 .. 0.71
   3 ?    4.6   0.5     0.015        15      27      72 ..     147     192 ..     141     197 .. 0.92
   4 ?   12.6   7.7   5.3e-05     0.051      37     121 ..     202     282 ..     196     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.35
    PF13851.1 40 kkkeekneklmaeikkenkrlkepLkkae 68
                  k++++++ +++++ + n++lk++L +++
  MMETSP0890-20130614|36143_1  5 DKRANAQDAEFSDLRTTNSNLKDQLIEMN 33
                 57777888888888888888888876554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0033
    PF13851.1  28 lIkslkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwe 108
                  +I +l eeia+   + ++ ++++a  k   +   +   +     e+L k+l+q  + +++L++++a++++++  + +l+ +
  MMETSP0890-20130614|36143_1  49 TIADLHEEIAQAMYELKEIKEQFAAQKCTMS---DLCSAKSDLEEQLTKALEQDHQARAELNEVRAQITTQNSTIAELECQ 126
                  5777777777766666655555544444333...33344444456789999999999999999999999999999888765 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.015
    PF13851.1  27 elIkslkeeiaelkkkeekneklmaeikkenkrlkepLkkaeeeve 72 
                  +lI +l++ ia+l++  +  e+++ ++++++++l+ +L+++++e +
  MMETSP0890-20130614|36143_1 147 TLIPELESTIADLRAANDLFESQVLSLTTRQSELQIELANIRKEEK 192
                  5899*************************************99976 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 5.3e-05
    PF13851.1  37 aelkkkeekneklmaeikkenkrlkepLkkaeeeveeLkkklkqyekdkqsLknlkaklkelekelknlkwesevleqrfekver 121
                   e kk ++++ekl+ ++ +en++  ++L++a+++ + L + l++ e  +   ++l+a l++++ke+     e+ vl+ r ++ve+
  MMETSP0890-20130614|36143_1 202 RESKKYDKDTEKLVTDLLAENQKKAKELAAAQKQINDLTESLQKSEAAR--KATLRANLDTSQKEIV--AGENAVLSSRNTNVEE 282
                  578999*************************************998877..5688889999998885..5788899999999886 PP

>> PF00052.13  Laminin B (Domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.5   7.7e-05     0.075      34     126 ..      24     118 ..      10     126 .. 0.72
   2 ?   -1.3   0.1       1.4   1.3e+03      56      74 ..     205     223 ..     169     266 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.7e-05
   PF00052.13  34 seadvilkGnglrlsvilia..egaslpseeevkvevrlkEnfw.dfqsrseavtredllsvLanldallIratYsaklaesrlddvsleiarkaa 126
                  + +d +++ n++ l+   +   ++ +   + ++++  +++E +   +q   ++ t +dl s  ++l++ l +a  ++++a ++l++v  +i  ++ 
  MMETSP0890-20130614|36143_1  24 NLKDQLIEMNDIVLEACEQSttQDST-IADLHEEIAQAMYELKEiKEQFAAQKCTMSDLCSAKSDLEEQLTKALEQDHQARAELNEVRAQITTQNS 118
                  44555566666666553332003333.356666677777776655577777789************************************998775 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.4
   PF00052.13  56 aslpseeevkvevrlkEnf 74 
                  +++ +++e+ v+  l En+
  MMETSP0890-20130614|36143_1 205 KKYDKDTEKLVTDLLAENQ 223
                  3333333334444444444 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.1    0.0079       7.7     219     325 ..       8     114 ..       2     127 .. 0.66
   2 ?    7.7  15.7    0.0011       1.1     211     328 ..     126     243 ..     115     267 .. 0.75
   3 ?    2.4   4.1     0.044        43     246     299 ..     221     273 ..     216     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0079
    PF09731.4 219 lvesepevkelvsilndlieslkednl.......skddlesliasakeevdqlskklaelkaeeeee..leraLkekkeellkkleeelskeleekeakleeklrqefekekeelr 325
                   ++++ e+++l ++  +l++ l e+n        +++ ++s+ia+++ee+ q+  +l+e+k++++++    + L + k++    lee+l k+le     +  + r+e+++++++++
  MMETSP0890-20130614|36143_1   8 ANAQDAEFSDLRTTNSNLKDQLIEMNDivleaceQSTTQDSTIADLHEEIAQAMYELKEIKEQFAAQkcTMSDLCSAKSD----LEEQLTKALE-----QDHQARAELNEVRAQIT 114
                  56666777666666666666666666666677777889************************987652245556666655....5555554444.....33445555555555544 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
    PF09731.4 211 llvekykelvesepev.kelvsilndlieslkednlskddlesliasakeevdqlskklaelkaeeeeeleraLkekkeellkkleeelskeleekeakleeklrqefekekeelreky 328
                   l ++ +++v+s++++ ++ ++ +++l + + +  + +d  es ++s+ ++ ++l+ +la +++ee+++   a ke++++ ++k +e+l   l ++++k++++l +  +k +  l+e++
  MMETSP0890-20130614|36143_1 126 QLTTDASKEVKSNDVQdSTQETLIPELESTIADLRAANDLFESQVLSLTTRQSELQIELANIRKEEKQAPTTARKERESKKYDKDTEKLVTDLLAENQKKAKELAA-AQKQINDLTESL 243
                  556666677777777768889999*********9999***************************************************998887666643333332.223333333332 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.044
    PF09731.4 246 skddlesliasakeevdqlskklaelkaeeeeeleraLkekkeellkkleeels 299
                  +++++ + +a a+++++ l + l++  a+ ++ l+ +L  +++e + + e++++
  MMETSP0890-20130614|36143_1 221 ENQKKAKELAAAQKQINDLTESLQKSEAARKATLRANLDTSQKE-IVAGENAVL 273
                  678899999******************************99999.555554444 PP

>> PF04253.10  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.36   3.6e+02      81     109 ..      46      72 ..      30      84 .. 0.65
   2 ?    2.9   0.5     0.069        67       5      56 ..      79     128 ..      54     188 .. 0.71
   3 ?    8.1   0.4    0.0017       1.7      77     119 ..     204     247 ..     200     252 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.36
                  ---B----HHHHTTGGG-SS---HHHHHH CS
   PF04253.10  81 dsatfpgirDaledadsssswdeaqrqls 109
                  +++t++ +++++++a    +++e+++q +
  MMETSP0890-20130614|36143_1  46 QDSTIADLHEEIAQAM--YELKEIKEQFA 72 
                  4466666666666666..44666666654 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.069
                  HHHHHHHHHHHHHHHHHHHHHHHS-...............TT-HHHHHHH..HHHHHHHHHHTB CS
   PF04253.10   5 qslfsalkkfkkaaekleqwikewdeiv..........gfepdllsvrrl..Ndrlmrverafl 56 
                  ++l sa +++++                            e ++++++++  N  ++++e +++
  MMETSP0890-20130614|36143_1  79 SDLCSAKSDLEEQ--------------LtkaleqdhqaRAELNEVRAQITtqNSTIAELECQLT 128
                  3333444444333..............1333333333334667777777667888888777665 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0017
                  TBTT---B----HHHHTTGGG-SS.---HHHHHHHHHHHHHHHH CS
   PF04253.10  77 wnsydsatfpgirDaledadssss.wdeaqrqlslvakalqgaa 119
                  +++yd++t   ++D l++++++++ ++ aq+q++ ++++lq++ 
  MMETSP0890-20130614|36143_1 204 SKKYDKDTEKLVTDLLAENQKKAKeLAAAQKQINDLTESLQKSE 247
                  5677788888899*99999988889***************9875 PP

>> PF11022.3  Protein of unknown function (DUF2611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.2   3.1e+03      47      63 ..      83      98 ..      60     107 .. 0.57
   2 ?   -2.1   0.0       3.7   3.6e+03      46      61 ..     133     148 ..     124     155 .. 0.73
   3 ?   12.0   0.3   0.00015      0.14      13      67 ..     167     225 ..     165     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.2
    PF11022.3 47 nasskDeekfikeflkk 63
                 +a+s D e+ + + l++
  MMETSP0890-20130614|36143_1 83 SAKS-DLEEQLTKALEQ 98
                 3333.555555555554 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.7
    PF11022.3  46 inasskDeekfikefl 61 
                   + +s+D+ ++ +e l
  MMETSP0890-20130614|36143_1 133 KEVKSNDVQDSTQETL 148
                  4567889988888776 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00015
    PF11022.3  13 qsHvLAlgtLgslfggvalatggskkkkkatppinassk....Deekfikeflkkaekk 67 
                  +s vL+l t  s   +  ++ ++ +k++++t+  + +sk    D ek++ ++l++++kk
  MMETSP0890-20130614|36143_1 167 ESQVLSLTTRQSELQIELANIRKEEKQAPTTARKERESKkydkDTEKLVTDLLAENQKK 225
                  5788888888888888899999999988877766666666777***********98775 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.7   1.7e+03      30      52 ..      11      33 ..       9      42 .. 0.73
   2 ?    8.3   1.0    0.0027       2.6      13      52 ..      43      82 ..      36      98 .. 0.83
   3 ?    3.3   0.3     0.096        93       6      28 ..     106     128 ..     101     136 .. 0.61
   4 ?    7.9   1.2    0.0037       3.6      14      62 ..     143     191 ..     139     195 .. 0.84
   5 ?    5.1   1.0     0.027        26      23      53 ..     218     248 ..     210     259 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.7
    PF04102.7 30 qqkeidrlqrqlrllaerlkele 52
                 q+ e ++l+   + l+++l e++
  MMETSP0890-20130614|36143_1 11 QDAEFSDLRTTNSNLKDQLIEMN 33
                 67777778888888888887776 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0027
    PF04102.7 13 lafqedtieeLNevvaeqqkeidrlqrqlrllaerlkele 52
                  + q+ ti +L e++a+   e++++++q ++ +  + +l 
  MMETSP0890-20130614|36143_1 43 STTQDSTIADLHEEIAQAMYELKEIKEQFAAQKCTMSDLC 82
                 5689************************999887777766 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.096
    PF04102.7   6 ieeLEiklafqedtieeLNevva 28 
                  ++e   +++ q+ ti eL  +++
  MMETSP0890-20130614|36143_1 106 LNEVRAQITTQNSTIAELECQLT 128
                  55555566666666666665555 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0037
    PF04102.7  14 afqedtieeLNevvaeqqkeidrlqrqlrllaerlkeleessneaseae 62 
                  + qe +i eL  ++a+ +   d  + q+  l+ r  el+ +  + +++e
  MMETSP0890-20130614|36143_1 143 STQETLIPELESTIADLRAANDLFESQVLSLTTRQSELQIELANIRKEE 191
                  67***********************************996655544444 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.027
    PF04102.7  23 LNevvaeqqkeidrlqrqlrllaerlkelee 53 
                  L  +  +  ke+++ q+q++ l+e l++ e+
  MMETSP0890-20130614|36143_1 218 LLAENQKKAKELAAAQKQINDLTESLQKSEA 248
                  5555556778999999999999999999883 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   9.6   0.00024      0.24      85     180 ..       3      98 ..       1     113 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00024
    PF04156.9  85 esesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqek 180
                  e +++ + ++ e+++l++ ++ l+++l + ++   +++e+ +   + + +l e+i++++ e++e+ e    +k+++ +l+s+ ++l+e+l+ + e+
  MMETSP0890-20130614|36143_1   3 ETDKRANAQDAEFSDLRTTNSNLKDQLIEMNDIVLEACEQSTTQDSTIADLHEEIAQAMYELKEIKEQFAAQKCTMSDLCSAKSDLEEQLTKALEQ 98 
                  6678889999****************************************************************************5555444332 PP

>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.6    0.0013       1.3      43     134 ..      14     112 ..      13     119 .. 0.81
   2 ?   -0.4   1.3      0.63   6.1e+02      89     120 ..     166     197 ..     141     220 .. 0.54
   3 ?    1.2   8.5       0.2   1.9e+02      55     145 ..     174     274 ..     166     287 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0013
    PF13870.1  43 dfeqlqienqalnekieernkeLkkLkkkttktvhalthlkeklh.......fleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqq 134
                  +f  l++ n +l+ ++ e n+ +++  +++t++  +++ l+e          +++e+++++k  + +++  + +l+++l+k+ ++ +++r+e +++r+q
  MMETSP0890-20130614|36143_1  14 EFSDLRTTNSNLKDQLIEMNDIVLEACEQSTTQDSTIADLHEEIAqamyelkEIKEQFAAQKCTMSDLCSAKSDLEEQLTKALEQDHQARAELNEVRAQ 112
                  5777777778887777777777777777777776777777666555666666*******************************************9998 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.63
    PF13870.1  89 leeeleelkkelkekeeklaklrkelykvkle 120
                   e++   l ++  e++ +la +rke  ++ ++
  MMETSP0890-20130614|36143_1 166 FESQVLSLTTRQSELQIELANIRKEEKQAPTT 197
                  44444444444444444444444443333332 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.2
    PF13870.1  55 nekieernkeLkkLkkkttktvhalthlkeklh..........fleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqqggllrkPaLlk 145
                  +++  e + eL +++k  ++   +    +e  +           l +e++++ kel+  ++++++l ++l k ++ r+   + n + +q+    + +a+l 
  MMETSP0890-20130614|36143_1 174 TTRQSELQIELANIRKEEKQAPTTARKERESKKydkdteklvtDLLAENQKKAKELAAAQKQINDLTESLQKSEAARKATLRANLDTSQKEIVAGENAVLS 274
                  555555566666666666666666666666666666666666678899999***********************************999999888888876 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.5   0.00016      0.15      75     160 ..      11      96 ..       3     100 .. 0.90
   2 ?    4.6   4.6     0.014        13      41     119 ..     103     189 ..      81     206 .. 0.40
   3 ?   -0.9   4.7      0.66   6.4e+02      53     122 ..     210     281 ..     168     285 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00016
    PF04582.7  75 vkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervkslesgsstgl 160
                    ae+++l+t+ ++l++ + ++   + +  e ++++d+++++l++e+     ++ ++k + +a+  +++dl +   +le   +++l
  MMETSP0890-20130614|36143_1  11 QDAEFSDLRTTNSNLKDQLIEMNDIVLEACEQSTTQDSTIADLHEEIAQAMYELKEIKEQFAAQKCTMSDLCSAKSDLEEQLTKAL 96 
                  46889999***********99999999********************************************999999998766665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.014
    PF04582.7  41 eaataslsesvssissklsdlsadlqd.vts...s..lddvk..aelkelstevaalqssvdslsseladlselvsahdaalsslqt 119
                   a  + ++  +++  s++++l+++l    ++   s  ++d +  + + el++++a l+ + d   s++ +l++  s+ +  l+++++
  MMETSP0890-20130614|36143_1 103 RAELNEVRAQITTQNSTIAELECQLTTdASKevkSndVQDSTqeTLIPELESTIADLRAANDLFESQVLSLTTRQSELQIELANIRK 189
                  222222223333333333333333321011100010011111001234455555555555555555555555555555555555554 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.66
    PF04582.7  53 sissklsdlsadlqdvtsslddvkaelkelstevaalqssv.dslssel.adlselvsahdaalsslqtevd 122
                  +  + ++dl a+ q+ ++ l+ ++ ++++l++ +++ + +  ++l ++l ++  e+v +++a lss +t+v+
  MMETSP0890-20130614|36143_1 210 DTEKLVTDLLAENQKKAKELAAAQKQINDLTESLQKSEAARkATLRANLdTSQKEIVAGENAVLSSRNTNVE 281
                  445567888888888888888888888888888877665541445566623455677777777777777665 PP

>> PF13421.1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8     0.001      0.98     123     179 ..      43     102 ..       3     135 .. 0.70
   2 ?   -0.5   0.1      0.67   6.5e+02     135     186 ..     142     185 ..     114     206 .. 0.53
   3 ?    2.2   0.2     0.099        97     142     174 ..     212     244 ..     195     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.001
    PF13421.1 123 Gtdeeftteeiseqlrslivtr..fsdllkeskipvldlaanseelseklreaikkel.a 179
                   t++++t  +++e++++ + +   +++  + +k ++ dl +++++l e+l++a++++  a
  MMETSP0890-20130614|36143_1  43 STTQDSTIADLHEEIAQAMYELkeIKEQFAAQKCTMSDLCSAKSDLEEQLTKALEQDHqA 102
                  5778888888888888888654669*****************************998733 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.67
    PF13421.1 135 eqlrslivtrfsdllkeskipvldlaanseelseklreaikkelaeyGlele 186
                  +          + l+ e + ++ dl a+ + + +++ + ++++ +e+ +el 
  MMETSP0890-20130614|36143_1 142 DST-------QETLIPELESTIADLRAANDLFESQVLS-LTTRQSELQIELA 185
                  222.......3344556666666666665554444432.3333344444444 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.099
    PF13421.1 142 vtrfsdllkeskipvldlaanseelseklreai 174
                   + ++dll+e++  + +laa+++++++  ++  
  MMETSP0890-20130614|36143_1 212 EKLVTDLLAENQKKAKELAAAQKQINDLTESLQ 244
                  45699*******************998665544 PP

>> PF10136.4  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.2   0.00075      0.73     137     230 ..      20     116 ..       8     127 .. 0.83
   2 ?    1.9   0.8     0.042        41      11      55 ..     211     255 ..     200     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00075
    PF10136.4 137 eeaekeseavarlraelleAlevLavqvaat.glepelrrrlpelaeeespFvalerevealleaaeaaeeeaeee..dlaelrvlldqCreavdkv 230
                  +++++ +++  ++++ +leA+e  ++q + + +l++e+ +++ el+e ++ F a++ ++++l++a+ + ee+ ++   +++++r+ l++ r+++++ 
  MMETSP0890-20130614|36143_1  20 TTNSNLKDQLIEMNDIVLEACEQSTTQDSTIaDLHEEIAQAMYELKEIKEQFAAQKCTMSDLCSAKSDLEEQLTKAleQDHQARAELNEVRAQITTQ 116
                  566777888899999999999999999887548********************************99999876655668888888888888888764 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.042
    PF10136.4  11 lielvewlraaakeeeesseaaaarlrlllevlerepelrarlaa 55 
                  +++lv  l a++++++++ +aa+++++ l+e l++++++r++  +
  MMETSP0890-20130614|36143_1 211 TEKLVTDLLAENQKKAKELAAAQKQINDLTESLQKSEAARKATLR 255
                  556777777788888888999*************99998876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2409  (0.1762); expected 273.4 (0.02)
Passed bias filter:                      494  (0.0361322); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.53u 0.39s 00:00:01.92 Elapsed: 00:00:01.31
# Mc/sec: 556.10
//
Query:       MMETSP0890-20130614|36148_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 628.01
//
Query:       MMETSP0890-20130614|36144_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-13   48.1   0.0      2e-12   47.0   0.0    1.6  1  PF11523.3  Protein of unknown function (DUF3223)
    4.5e-06   26.3   0.0    4.5e-06   26.3   0.0    2.3  3  PF08777.6  RNA binding motif
    4.4e-05   22.9   0.0    0.00016   21.1   0.0    2.0  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
      0.034   14.0   0.0       0.15   11.9   0.0    2.1  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
      0.061   13.0   0.0       0.16   11.7   0.0    1.7  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF11523.3  Protein of unknown function (DUF3223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   7.4e-16     2e-12       3      76 .]      89     161 ..      87     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 7.4e-16
                  HHHHHS----B--S--.--HHHHHHHTSTTHHHH------EEEEEES---..-EEEEEE-----EEE--GGGSS CS
    PF11523.3   3 ellhryedgeklseedekillealleyHpkkeeKigaGidsievrkhpegeksrCFfvvrkDgteeDFSyrkci 76 
                  el++++e+g k +  d + +l alle Hp +eeK+  G+ +i +++++++ +++  +v rkDg+   FS+rkc+
  MMETSP0890-20130614|36144_1  89 ELTSKLEPGGKATGVD-QFVLFALLEAHPTSEEKMNGGVVHIGYDINADFPDTKSYYVERKDGSRVGFSIRKCV 161
                  6777888888888888.899*****************************************************8 PP

>> PF08777.6  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4      0.73     2e+03      47      60 ..      46      59 ..      12      89 .. 0.62
   2 ?   -2.8   0.0       1.9   5.2e+03      43      54 ..     179     190 ..     176     195 .. 0.84
   3 !   26.3   0.0   1.6e-09   4.5e-06       1      99 [.     201     293 ..     201     298 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.73
                 -..HHHH---TTTT CS
    PF08777.6 47 deaakkalekatea 60
                 +eaa    +k te 
  MMETSP0890-20130614|36144_1 46 EEAASPTAKKNTEE 59
                 23333444444444 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.9
                  EESS-..HHHH- CS
    PF08777.6  43 rFkedeaakkal 54 
                  rFk+++++k+a+
  MMETSP0890-20130614|36144_1 179 RFKNNASGKHAM 190
                  999999999987 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 1.6e-09
                  --EEEEE-.--SS--HHHHHHHT-----EEEE----------EEESS-..HHHH---TTTT----B-TTSSS-EEE-----HHHHHHHHHHHHHHHHH-- CS
    PF08777.6   1 GvivklsG.lnkelsredikelfsklgevkyvdfkegdkegevrFkedeaakkalekateanegklkikeaevtlellegeeEkeylkkiledkqkklnn 99 
                  G  + +sG  ++ +  + +++++ k+g v++ +++e++  +++rF++ e+a +a+++ t++       ++++++l+ ++  eE e   + ++ ++++ n 
  MMETSP0890-20130614|36144_1 201 GSAISISGlEGQGINHHMLRKVMGKFGIVRWMELSEDEGIAKLRFDSVESADNAIANFTDI-------EGCAAKLNKMSQAEEDELRSQWIAARAERNNS 293
                  6778999*44555669********************************************9.......77777777777777777777777777777655 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   5.1e+03      21      35 ..      31      46 ..      20      53 .. 0.72
   2 ?   -3.9   0.0       3.6   9.8e+03      42      57 ..      73      88 ..      70      93 .. 0.67
   3 !   21.1   0.0   5.7e-08   0.00016       3      66 ..     206     263 ..     204     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.9
                 TCTCEEEEEEEES.TT CS
   PF00076.17 21 kfGpiesiklvrd.et 35
                 k +p++++k+ +d + 
  MMETSP0890-20130614|36144_1 31 KEPPVKKLKVANDdQE 46
                 5678888888888654 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.6
                 EEEEESSHHHHHHHHH CS
   PF00076.17 42 afVeFeseedaekAle 57
                 a +eF+s+e+  + ++
  MMETSP0890-20130614|36144_1 73 AGIEFASREALWSWVQ 88
                 5588988887655555 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 5.7e-08
                  EESS.TTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETT CS
   PF00076.17   3 VgnL.ppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklgg 66 
                  +++L  + ++ + L+++++kfG ++  +l+ d      g+a  +F+s e+a++A++  n + ++g
  MMETSP0890-20130614|36144_1 206 ISGLeGQGINHHMLRKVMGKFGIVRWMELSED-----EGIAKLRFDSVESADNAIA--NFTDIEG 263
                  6666678899**********************.....******************9..6666665 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.4   3.8e+03      44      59 ..      75      90 ..      68      98 .. 0.80
   2 ?   11.9   0.0   5.4e-05      0.15       3      58 ..     206     257 ..     204     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.4
    PF14259.1 44 vefeseedAqkalkkl 59
                 +ef+s+e+   +++ l
  MMETSP0890-20130614|36144_1 75 IEFASREALWSWVQEL 90
                 9999999988887765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.4e-05
    PF14259.1   3 vrglp.psvteedlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkk 58 
                  ++gl  + ++   lr+ ++++g v  +++  +      g A + f+s e+A++a+++
  MMETSP0890-20130614|36144_1 206 ISGLEgQGINHHMLRKVMGKFGIVRWMELSED-----EGIAKLRFDSVESADNAIAN 257
                  778862569999*****************987.....9****************987 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.3   1.2e+04      26      33 ..      75      82 ..      73      89 .. 0.85
   2 ?   11.7   0.0   5.8e-05      0.16       1      41 [.     219     258 ..     219     263 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.3
    PF13893.1 26 vefdtvea 33
                 +ef+++ea
  MMETSP0890-20130614|36144_1 75 IEFASREA 82
                 89999997 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.8e-05
    PF13893.1   1 LyklfskfGkverikifrkkggqAfvefdtveaArkakeyl 41 
                  L+k   kfG v+ + + ++  g A   fd+ve+A++a++++
  MMETSP0890-20130614|36144_1 219 LRKVMGKFGIVRWMELSEDE-GIAKLRFDSVESADNAIANF 258
                  678889*************9.*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       663  (0.0484933); expected 273.4 (0.02)
Passed bias filter:                      436  (0.03189); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.69
# Mc/sec: 1278.06
//
Query:       MMETSP0890-20130614|36149_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-14   53.0   0.5    1.8e-13   49.9   0.0    2.6  2  PF02390.12 Putative methyltransferase
  ------ inclusion threshold ------
       0.18   11.7   0.1       0.18   11.7   0.1    2.4  2  PF13659.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   2.6e-17   1.8e-13      14     154 ..     215     361 ..     206     402 .. 0.79
   2 ?   -2.4   0.2      0.26   1.8e+03     105     120 ..     420     435 ..     417     442 .. 0.66

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 2.6e-17
                  TTSGGGB-EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH--TTB------HHHHHHHHS----BSEEEEES------.......----------TTHHHHHHHHB-----EEEEES-HHHHHHHHHHHHH.STT CS
   PF02390.12  14 klfeneqklvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiealglkNlrilegdaekvleslfadnslekifinFPDPWfK.......krhhKrRllqpellkelarvLkkgGvlelaTDveeyleemlelleenkpl 154
                  ++++n++++++e+G G G+f  + A++n +  +l  E ++++ ++++++    +l+N + + g a+ +l+ l+  +sl++ f+nFP P          +    r +l  +l +elarvLk+++ +++aTD++ y+   ++ ++  + +
  MMETSP0890-20130614|36149_1 215 HFVANKTSIMCELGAGDGEFATRRAQNNQNDCWLINELKFNRAAAIVARCVLTQLTNTATIAGRADAFLKALPD-ESLDGCFVNFPQPPTQvcittepQLYDGRHMLDLPLFSELARVLKPSAAITIATDNASYVDLLVAIAKLVNAK 361
                  68899999***********************************************************9988877.9************87622222223345688****************************998776666554333 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.26
                  ----------TTHHHH CS
   PF02390.12 105 krhhKrRllqpellke 120
                  +++++rR++ ++  +e
  MMETSP0890-20130614|36149_1 420 RKKKRRRIIVRKCDEE 435
                  5677788887776555 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.1      0.19   1.3e+03      19      49 ..      38      96 ..      31     209 .. 0.58
   2 ?   11.7   0.1   2.6e-05      0.18       4     114 ..     224     341 ..     221     344 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.19
    PF13659.1 19 lell.aalllgvEldpraaalaarnlar..agl.........................a 49
                 +++l ++++ +++++++ a +a + ++   a++                         +
  MMETSP0890-20130614|36149_1 38 AAALkPIQASALDCQSAQAYIAIAQAHAvlAQAelfqtarakafellgqeeeqnefisK 96
                 44445677777777777655554332221111122222222333333334333333330 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 2.6e-05
    PF13659.1   4 vldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlyd.......afleaaarllkpgGvlvli 114
                  ++++g+G G f++  +++  ++  l +El  ++aa+  +++ +++l+++   + g + ++ ++l+++s d ++ n P  p++   +   +lyd        ++ ++ar+lkp++++ + 
  MMETSP0890-20130614|36149_1 224 MCELGAGDGEFATRRAQNNqNDCWLINELKFNRAAAIVARCVLTQLTNT-ATIAGRADAFLKALPDESLDGCFVNFPQPPTQVCITTEPQLYDgrhmldlPLFSELARVLKPSAAITIA 341
                  5799*******99999888688888889966666666666666777644.4556777777779***************888555555555555555555699999******99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.83
# Mc/sec: 1380.07
//
Query:       MMETSP0890-20130614|36158_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-06   26.8   0.0    6.4e-06   25.8   0.0    1.5  1  PF13854.1  Kelch motif
    2.1e-05   24.0   0.1    3.4e-05   23.4   0.0    1.4  1  PF13418.1  Galactose oxidase, central domain
    2.6e-05   24.1   0.1    4.6e-05   23.3   0.0    1.5  2  PF13415.1  Galactose oxidase, central domain
     0.0027   17.5   0.0     0.0064   16.4   0.0    1.6  1  PF07646.10 Kelch motif
  ------ inclusion threshold ------
      0.036   14.1   0.0      0.063   13.3   0.0    1.4  1  PF13964.1  Kelch motif
       0.09   12.2   0.0       0.64    9.4   0.0    2.0  1  PF01344.20 Kelch motif


Domain annotation for each model (and alignments):
>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.8e-09   6.4e-06       2      41 ..       9      51 ..       9      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.8e-09
    PF13854.1  2 PppRarhcavvvsgniylyGGks..g.nddsvsddvyvLslps 41
                 P++R rh++v ++++++l+GG +  g ++  + + + +L+l++
  MMETSP0890-20130614|36158_1  9 PSARERHATVILNDEMFLFGGIGigGaSGLAPPNALEILDLNT 51
                 9**********************75356666679999999987 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.5e-08   3.4e-05       5      44 ..      15      57 ..      11      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.5e-08
    PF13418.1  5 hsavavpdgrlylfGGenedg....gplnDlyvfDlstntWtrl 44
                 h++v + ++ ++lfGG++  g     p n l ++Dl+t+ W+  
  MMETSP0890-20130614|36158_1 15 HATVIL-NDEMFLFGGIGIGGasglAPPNALEILDLNTGAWQLR 57
                 899999.78**********98********************644 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.7   8.3e+03      37      46 ..       8      17 ..       6      19 .. 0.65
   2 !   23.3   0.0     2e-08   4.6e-05       1      44 [.      21      78 ..      21      83 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.7
    PF13415.1 37 lPppRaghta 46
                 +P++R  h++
  MMETSP0890-20130614|36158_1  8 CPSARERHAT 17
                 5777765655 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 2e-08
    PF13415.1  1 gdelyvfGGlgd...dgqtrlndvyvldldtntwe.......eigslPp....pRagh 44
                 +de+++fGG g    +g ++ n + +ldl+t+ w+       + +slP+    p  + 
  MMETSP0890-20130614|36158_1 21 NDEMFLFGGIGIggaSGLAPPNALEILDLNTGAWQlrdtageQPASLPGilahPIGSS 78
                 699******998555556666**************86544433377776555555555 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06    0.0064       2      42 ..      12      54 ..      11      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.8e-06
   PF07646.10  2 ryghsavvpggkiyvvGGa..htdngllsssdlnvldpeknvW 42
                 r +h++v++++ ++++GG+  ++  gl  ++ l +ld+++  W
  MMETSP0890-20130614|36158_1 12 RERHATVILNDEMFLFGGIgiGGASGLAPPNALEILDLNTGAW 54
                 89*****************998888888899999999999988 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-05     0.063       4      42 ..      14      56 ..      11      64 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.8e-05
    PF13964.1  4 ghsavsvggkiyifGGytns....gkylndvlvydpetksWeq 42
                  h++v+ ++  ++fGG + +      + n+++++d+ t+ W+ 
  MMETSP0890-20130614|36158_1 14 RHATVILNDEMFLFGGIGIGgasgLAPPNALEILDLNTGAWQL 56
                 5899999999999999999999999999*************85 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00028      0.64       1      40 [.      11      54 ..      11      56 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00028
                 SSSCEEEEEETTEEEEE---BS....TTS-TTEEEEEETTTTEE CS
   PF01344.20  1 arssagvvvldgkiYviGGrdg....dtnalnsVerYDpvtntW 40
                 ar  ++ v l+++++ +GG+         + n  e++D+ t  W
  MMETSP0890-20130614|36158_1 11 ARERHATVILNDEMFLFGGIGIggasGLAPPNALEILDLNTGAW 54
                 67789**************9888888788888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       147  (0.0107519); expected 273.4 (0.02)
Passed bias filter:                      140  (0.0102399); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.38s 00:00:00.74 Elapsed: 00:00:00.84
# Mc/sec: 262.46
//
Query:       MMETSP0890-20130614|36159_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-20   71.8   0.0    6.7e-20   71.4   0.0    1.3  1  PF08007.7 Cupin superfamily protein
    1.8e-06   27.5   0.0    9.1e-06   25.2   0.0    1.9  1  PF13621.1 Cupin-like domain
     0.0074   15.6   0.0      0.023   14.0   0.0    1.7  2  PF07883.6 Cupin domain


Domain annotation for each model (and alignments):
>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   1.5e-23   6.7e-20     111     210 ..     152     262 ..     109     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 1.5e-23
                  H.-----EEEEE---.-----SEE-SSEEEEEEEE--EEEEEE-......-SSTT-SS-EE--TTT--..--SEEEEE----EEEE----EEEEE---....----EEEEE CS
    PF08007.7 111 f.slvgsnvYatpgg.sqgvgpHyDdyDVfllQleGrkrWrvyk......ptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvaed...esltlSvglr 210
                      vg n+Y+t +g + + ++H D  DVf++Q++G k+Wrv k        v + ++ + +++ +++e + v d++LepGD+L++P g++H+ ++        +lS++l+
  MMETSP0890-20130614|36159_1 152 LaLPVGGNIYLTNSGiKRSAPAHSDRQDVFAVQISGYKHWRVAKppaltsVQVDPFARGKGDDILHDNELDWVLDLILEPGDVLFIPAGCPHETSTAFdfnSHNKLSTHLT 262
                  36689********99678**************************99988755555556666677788989***********************998643422223444444 PP

>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     2e-09   9.1e-06     130     230 ..     156     247 ..     132     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2e-09
    PF13621.1 130 eavnlWlGnsa..sssslHhDhyeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvdvenpdlekfprfkdakalevelepGevLYlPalWfHeVss 230
                     n++l ns+   s   H D  + +++++sG K++ + +p   + ++v +       +++ + ++    + + ++    l+  lepG+vL++Pa+  He s+
  MMETSP0890-20130614|36159_1 156 VGGNIYLTNSGikRSAPAHSDRQDVFAVQISGYKHWRVAKPPALTSVQVDP-------FARGKGDD----ILHDNELDWVLDLILEPGDVLFIPAGCPHETST 247
                  556999999995557889******************************888.......44444333....3344444467999****************9875 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.1   5.1e+03      10      33 ..     170     192 ..     168     195 .. 0.76
   2 !   14.0   0.0     5e-06     0.023      39      58 ..     227     246 ..     211     252 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.1
                  EE-EBE-TT-EEEEEEEE--EEEE CS
    PF07883.6  10 sapshrHpgedeffyVleGegelt 33 
                  sap+h+ ++   f + ++G+ +++
  MMETSP0890-20130614|36159_1 170 SAPAHSDRQD-VFAVQISGYKHWR 192
                  6788988887.8888888887766 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5e-06
                  EEE-TT-EEEE-TT-EBEEB CS
    PF07883.6  39 veleaGdsvyfpagtpHrfr 58 
                   +le+Gd++++pag pH+  
  MMETSP0890-20130614|36159_1 227 LILEPGDVLFIPAGCPHETS 246
                  79***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:01.31
# Mc/sec: 817.69
//
Query:       MMETSP0890-20130614|36160_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   16.6   0.0      0.005   15.9   0.0    1.4  1  PF03388.8  Legume-like lectin family
     0.0057   16.2   0.4      0.011   15.2   0.3    1.5  1  PF00092.23 von Willebrand factor type A domain
  ------ inclusion threshold ------
       0.01   15.2   0.0       0.18   11.3   0.0    2.7  1  PF06825.7  Heat shock factor binding protein 1
      0.011   14.1   1.8      0.014   13.8   1.3    1.1  1  PF00067.17 Cytochrome P450
      0.014   14.6   1.0      0.028   13.6   0.5    1.6  2  PF04315.7  Protein of unknown function, DUF462
      0.042   13.2   4.6      0.054   12.8   3.2    1.1  1  PF04286.7  Protein of unknown function (DUF445)
      0.067   13.1   5.2        2.6    8.0   0.5    2.5  3  PF00615.14 Regulator of G protein signaling domain
       0.12   12.1   5.4        0.3   10.7   3.8    1.6  1  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
       0.58    9.9  10.0       0.85    9.4   6.9    1.4  1  PF03938.9  Outer membrane protein (OmpH-like)
       0.69    9.9   7.8        1.1    9.2   4.5    1.9  2  PF08702.5  Fibrinogen alpha/beta chain family
        2.7    6.7   8.4        3.7    6.2   5.8    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
          3    7.5   7.8          5    6.7   4.7    1.8  2  PF07295.6  Protein of unknown function (DUF1451)


Domain annotation for each model (and alignments):
>> PF03388.8  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.4e-06     0.005     203     228 ..     103     128 ..      70     131 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.4e-06
    PF03388.8 203 gyyfgvsaatgdlsdnhdvlslkllq 228
                    ++g++a tg+l+dnhdvl l +++
  MMETSP0890-20130614|36160_1 103 RAHLGITASTGQLADNHDVLALEVFS 128
                  579******************99986 PP

>> PF00092.23  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3     1e-05     0.011      12      91 ..     152     239 ..     144     259 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1e-05
                  S-HHHHHHHHHHHHHHHHHH.CCTTTEEEEEEEESSSEE...EEE-TCCHHCCSSCGGHH..........-CCGGSTTS-B-HHHHHHHHHHH CS
   PF00092.23  12 igeenfekvkefikkliekldigpdsvrvglvqyssdak...tevslndfkskeellsav..........sknlkylgggtntgkALkyalen 91 
                  +++e+f+++ ++i++l++k+d+ +++v  +lv+ +++++   +     + +++++ +             + ++  +    n+ +A++ a+++
  MMETSP0890-20130614|36160_1 152 VSPERFDRIEQMINNLLSKFDYLEHHVEHELVSVDDHVRvtlD---KLSKQEQNSEK--RieqlekqvlqNVESSLSDRIANLEAAMREAVQK 239
                  7899********************************9995441...33222211111..1122345556556666666667777777777776 PP

>> PF06825.7  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.18      17      44 ..     158     214 ..     155     247 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
    PF06825.7  17 drFedmSdnivgriDeM.............................gkriDdLEksv 44 
                  dr e+m +n++++ D                               +kri++LEk v
  MMETSP0890-20130614|36160_1 158 DRIEQMINNLLSKFDYLehhvehelvsvddhvrvtldklskqeqnsEKRIEQLEKQV 214
                  78999999*******99*****************************9*******988 PP

>> PF00067.17  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.3   1.2e-05     0.014     146     269 ..     134     258 ..     110     261 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHHS----.TSSSHHHHHHHHHHHHHH....HHHCHGGGTTSHCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSS-SHHHHHHHCT.TTSSSSSSS-HHHHHHHHHH CS
   PF00067.17 146 skaaldvigsilFgarfdlledeklselvkaveelss....llskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllak.kekkgesklsdeelaatvle 269
                  ++a  d+ ++++F+   + +  e++ ++++++++l+s    l ++  ++l+ + + +++ ++kl ++ ++  k++++l ++++++ +++l+++  +    +   ++++ k+    ++ +++++ atv +
  MMETSP0890-20130614|36160_1 134 QEAEKDAASELAFETGTG-VSPERFDRIEQMINNLLSkfdyLEHHVEHELVSVDDHVRVTLDKLSKQEQNSEKRIEQLEKQVLQNVESSLSDRIANLEAAMREAVQKRiKTA---EQNTMDNISATVAD 258
                  555667788999999999.8888899*********998887778888999999999*************************************4445555555555543222...46699999999976 PP

>> PF04315.7  Protein of unknown function, DUF462
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.6     3e+03      88     133 ..      92     140 ..      89     152 .. 0.60
   2 ?   13.6   0.5   2.4e-05     0.028      99     160 ..     184     245 ..     176     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.6
    PF04315.7  88 kPqalewllalaaglkfrvsvDnLsge..eadrqaFk.ekvaeqvkeyl 133
                   P al+    + a l  ++s+ +L+++      + F+ ++v++++++ +
  MMETSP0890-20130614|36160_1  92 LPAALDATWLTRAHLGITASTGQLADNhdVLALEVFSdKEVHQEAEKDA 140
                  5777777777777777777777777664222345554145666665554 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.4e-05
    PF04315.7  99 aaglkfrvsvDnLsgeeadrqaFkekvaeqvkeyleeglpkraakflealaefyetealkee 160
                  +++ + rv +D Ls++e+++++  e++++qv + +e++l+ r a++  a++e+++++  ++e
  MMETSP0890-20130614|36160_1 184 SVDDHVRVTLDKLSKQEQNSEKRIEQLEKQVLQNVESSLSDRIANLEAAMREAVQKRIKTAE 245
                  5677889*********9999999****************************99998833333 PP

>> PF04286.7  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.2   4.8e-05     0.054     180     283 ..     152     262 ..     107     267 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-05
    PF04286.7 180 v.......lesivsmflrgldsilekvqsdpdhplrqeetkeveeliadllndpela.aeveklkkkklsdlevqeseek..lwealkdllkkklneee..llreilsklleklge 283
                  v       +e++ + +     s  + +++ ++h+l    +++v+  +++l ++++   +++e+l+k++l+++e+  s +   l +a++++++k++++ e  ++++i +++ +kl++
  MMETSP0890-20130614|36160_1 152 VsperfdrIEQMINNL----LSKFDYLEHHVEHELVSV-DDHVRVTLDKLSKQEQNSeKRIEQLEKQVLQNVESSLSDRIanLEAAMREAVQKRIKTAEqnTMDNISATVADKLKS 262
                  3555422233333333....444566666666666543.33346666666655544337788888888888887665554557777777777777776666666666666555554 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.66   7.5e+02      69     106 ..     129     173 ..     122     176 .. 0.69
   2 ?    8.0   0.5    0.0023       2.6      56     103 ..     172     220 ..     154     225 .. 0.84
   3 ?    7.0   0.2    0.0046       5.2      63     103 ..     223     262 ..     218     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.66
                  -HHHHHHHHHHTCS.........--TTTTHHHHHHHHHHHTTHHH CS
   PF00615.14  69 dkklreeleknleka.......qpsrklfeeaqeevfrllekdsy 106
                  dk++ +e ek   ++         s++ f+++ + + +ll+k +y
  MMETSP0890-20130614|36160_1 129 DKEVHQEAEKDAASElafetgtGVSPERFDRIEQMINNLLSKFDY 173
                  555555555554444666666677899999999999999998766 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0023
                  HHTSSSSTTSS.TS-HHHHHHHHHHTCS..--TTTTHHHHHHHHHHHTT CS
   PF00615.14  56 kylapsspkel.nidkklreeleknlekaqpsrklfeeaqeevfrllek 103
                   yl+++ ++el  +d+++r +l k  +++q+s+k  e++ ++v+++ e+
  MMETSP0890-20130614|36160_1 172 DYLEHHVEHELvSVDDHVRVTLDKLSKQEQNSEKRIEQLEKQVLQNVES 220
                  489999999999*******************************998775 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0046
                  TTSS.TS-HHHHHHHHHHTCS..--TTTTHHHHHHHHHHHTT CS
   PF00615.14  63 pkel.nidkklreeleknlekaqpsrklfeeaqeevfrllek 103
                  +  + n++ ++re ++k++++   ++++++++ + v + l++
  MMETSP0890-20130614|36160_1 223 SDRIaNLEAAMREAVQKRIKT--AEQNTMDNISATVADKLKS 262
                  45566****************..99***********999987 PP

>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.8   0.00026       0.3      36     132 ..     160     261 ..     154     265 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00026
    PF04513.7  36 latlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq....dtlrneLtnlnsiltnLlssvtNinstLnnllqa.lnnl...dlgalsqeledald 132
                  ++++++++ ++++ l++++++ l ++d+++  +l++L+++ ++ +    +  ++ L+n++s l++    ++N+++++   +q  ++     + +++s++ +d+l+
  MMETSP0890-20130614|36160_1 160 IEQMINNLLSKFDYLEHHVEHELVSVDDHVRVTLDKLSKQEQNSEkrieQLEKQVLQNVESSLSD---RIANLEAAMREAVQKrIKTAeqnTMDNISATVADKLK 261
                  67778888888888888888888888885555555555554444433314444556677765544...5666666665555432444411144445544444444 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.9   0.00075      0.85      47     126 ..     184     264 ..     115     267 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00075
    PF03938.9  47 ekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqaya.qqlqaelqaeqqevlqklidkiadaikkva 126
                    ++ ++ + ++l k+++n ++  +ql ++  +  e  l  + ++l+a++ +++q++++ ++q+ ++++   +ad++k v 
  MMETSP0890-20130614|36160_1 184 SVDDHVRVTLDKLSKQEQNSEKRIEQLEKQVLQNVESSLSDRIANLEAAMrEAVQKRIKTAEQNTMDNISATVADKLKSVS 264
                  4445588889999999999999999*********************876515667**********************9986 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   2.1e+03      95     113 ..     160     178 ..     129     193 .. 0.59
   2 ?    9.2   4.5   0.00098       1.1      25      85 ..     194     258 ..     190     265 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.9
                  HHHHHHHHHHHHHHHHHHH CS
    PF08702.5  95 lekkilaqesqirvLqevl 113
                  +e+ i++  s+ ++L + +
  MMETSP0890-20130614|36160_1 160 IEQMINNLLSKFDYLEHHV 178
                  3333333333333333333 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00098
                  HCHCCCCCCCCHHHCCHCCCCHHH.HCH.CCHHHHHHHHHHHHHHCCCHCHCCH..HHHHHHHHH CS
    PF08702.5  25 dlldkyekdvdkkieklenlLeql.ank.tkeieelvksikeslkekqkqakdn..dniesavsk 85 
                  d l+k+e++ +k+ie+le+++ q  + + +  i +l  ++ e ++++ k a++n  dni   v++
  MMETSP0890-20130614|36160_1 194 DKLSKQEQNSEKRIEQLEKQVLQNvESSlSDRIANLEAAMREAVQKRIKTAEQNtmDNISATVAD 258
                  6799*************988754413331345666666666777666666665511344444444 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.8    0.0033       3.7      29     128 ..     164     263 ..     155     267 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0033
    PF10186.4  29 lanlkaeketlkkkveealeeaenekklaaqqlklevaskkerieqirkrieqlkeeieqkr.eri.eelkealaqrrsdleasaqlekrraeqlaklqeei 128
                  + nl+++ + l+++ve +l + ++  +  +++l+ +++++++rieq+ k++ q  e   ++r +++ ++++ea+++r +++e  ++  +++++ +a++++++
  MMETSP0890-20130614|36160_1 164 INNLLSKFDYLEHHVEHELVSVDDHVRVTLDKLSKQEQNSEKRIEQLEKQVLQNVESSLSDRiANLeAAMREAVQKRIKTAE--QNTMDNISATVADKLKSV 263
                  56899999999********9999999999******************99987766654443323331345566666666655..666666666666666554 PP

>> PF07295.6  Protein of unknown function (DUF1451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3     0.016        19      66      99 ..     170     203 ..     134     205 .. 0.87
   2 ?    6.7   4.7    0.0044         5       5      82 ..     182     264 ..     174     267 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.016
    PF07295.6  66 dlqlleeslwdeLseitDrtqveweelaqdlehq 99 
                  +++ le+ + +eL ++ D  +v + +l+++ +++
  MMETSP0890-20130614|36160_1 170 KFDYLEHHVEHELVSVDDHVRVTLDKLSKQEQNS 203
                  56789********************999987665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0044
    PF07295.6   5 lketekksekelkeaiekakealkaaeeltkeelalieeylkrDleefaesvee.....lkekesldlqlleeslwdeLseit 82 
                  l  + ++ + +l+++ ++ ++++k  e+l+k+ l+++e+ l   +++++  ++e      k+ e+ +++ ++ +++d+L+++ 
  MMETSP0890-20130614|36160_1 182 LVSVDDHVRVTLDKLSKQEQNSEKRIEQLEKQVLQNVESSLSDRIANLEAAMREavqkrIKTAEQNTMDNISATVADKLKSVS 264
                  566677888899******************************9999999988888889989999***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1986  (0.14526); expected 273.4 (0.02)
Passed bias filter:                      833  (0.0609274); expected 273.4 (0.02)
Passed Vit filter:                       112  (0.00819193); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.91
# Mc/sec: 705.74
//
Query:       MMETSP0890-20130614|36167_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 539.18
//
Query:       MMETSP0890-20130614|36174_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.41s 00:00:00.69 Elapsed: 00:00:00.61
# Mc/sec: 184.64
//
Query:       MMETSP0890-20130614|36186_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 666.49
//
Query:       MMETSP0890-20130614|36189_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-40  138.0   0.0    4.1e-40  136.9   0.0    1.6  1  PF00270.24 DEAD/DEAH box helicase
    5.9e-24   83.6   0.5      2e-23   81.9   0.4    1.9  1  PF00271.26 Helicase conserved C-terminal domain
    1.5e-07   31.1   0.2    5.7e-07   29.3   0.2    2.0  1  PF08152.7  GUCT (NUC152) domain
     0.0041   16.8   0.0     0.0097   15.6   0.0    1.6  1  PF04851.10 Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.0   1.2e-43   4.1e-40       1     172 [.     129     359 ..     129     360 .. 0.94

  Alignments for each domain:
  == domain 1    score: 136.9 bits;  conditional E-value: 1.2e-43
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..H.......TTSTS...EEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCHHTTTEEEEEECTHHHHHCTTTHHHHHHHHHHSHHTTT.....................................................SEEEEEESS-THHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................................xxxxxxxxxxxxxxxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlk.......kttik...kalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr.....................................................lqvivlSATlpkdvkk 172
                  t+iQa ++++i++g+d+l++++TG+GKT+af +p++++l  ++        +        ++++aPtreLa+q+ ++l+++ + ++lr+++ +ggv+    q++ l+ngvdi+v+T gr++d++ +g+l+ls+   lVlDEad++ls+gf d++++i + +  +kr                                                     +q++++SAT pk +k+
  MMETSP0890-20130614|36189_1 129 TEIQALSFDAIYQGRDLLGKSRTGTGKTIAFGLPLIEQLGAKKRqglykqtR---GqgpAIVVLAPTRELAKQVETELSSLSAVHGLRTTCFHGGVSYV-PQERALRNGVDILVATVGRVIDHLDRGNLDLSNAYHLVLDEADEMLSMGFADDVEKIFSFTPAAKRgkhvkhaeeeqaflddlldeelggdpifsdqpqnknnfqtrtqnpfvdandmqVQTLLFSATTPKWIKQ 359
                  79***********************************998755477774332...24559*************************************77.9999*********************************************************99999999************************************************************988876 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.4   5.9e-27     2e-23      10      78 .]     451     519 ..     445     519 .. 0.96

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 5.9e-27
                  EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26  10 vailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  + +lhg++ q++re++l qf++g + vlvat+va+rGid+ +v++V+++ +pr+ ++yi+r GRtgRag
  MMETSP0890-20130614|36189_1 451 AQVLHGDIGQSQREATLAQFRRGAFTVLVATDVAARGIDVRGVDLVVQYRIPRDAEGYIHRSGRTGRAG 519
                  679****************************************************************97 PP

>> PF08152.7  GUCT (NUC152) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2   1.7e-10   5.7e-07       5      96 ..     615     722 ..     612     723 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.7e-10
    PF08152.7   5 ikqRSLltseegyvTllLeaskeist..lsyvwkvlkrfLse............eaveeikgltlladekGavFDvpeeeaeellaksqeaa..gvelevvtelPelq 96 
                  +++RSLlt++e  +T++++a + ++t  ++++ + l +++++                ++  +++ +d + avFD++e+ a++ll+  q ++  +  +e++  lP++q
  MMETSP0890-20130614|36189_1 615 VTRRSLLTGAEDTTTIMITAPRALKTgdVVFAVSKLLERIEDdqraaeedddvfLPKASVGVVKICQDTTKAVFDLEENAAKRLLEFVQTQNlqRFAFEECAVLPPIQ 722
                  789******************98876336888999999999978777665433323468999***********************9877766779***********98 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.8e-06    0.0097      19      70 ..     120     203 ..     104     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.8e-06
   PF04851.10  19 ieke................dekkrglivmaTGtGKTlvaa.sliarlar...............kflflvprkelleqaleef 70 
                  + k                 ++ + +l +  TGtGKT+     li++l                  +++l+p++el +q + e+
  MMETSP0890-20130614|36189_1 120 LAKRgihkfteiqalsfdaiYQGRDLLGKSRTGTGKTIAFGlPLIEQLGAkkrqglykqtrgqgpAIVVLAPTRELAKQVETEL 203
                  33333444455567788888889999999********988752555555566667777888*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.16u 0.39s 00:00:01.54 Elapsed: 00:00:01.47
# Mc/sec: 1302.51
//
Query:       MMETSP0890-20130614|36197_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-27   97.1   0.0    1.2e-27   96.9   0.0    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   9.1e-32   1.2e-27      25     155 ..       7     127 ..       2     128 .. 0.79

  Alignments for each domain:
  == domain 1    score: 96.9 bits;  conditional E-value: 9.1e-32
                  -TTTTT--------TTT------------------S--TT--..STT-----.--S-TT.THHHH---HHHHHHHHTT------------------------..-----------STTT----TTTTT------- CS
   PF00504.16  25 tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.waeaggls.lptllalqillligflelareqelkapesegsekraypGglgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  +lk+lr +El++GRvAMla++G++v+el+ +++++    + p+ +   g++s +   + +qill++g++ela    +          ++ pG+ gfdp g+   k+e++ + +klkE++++R+AM++flg++vq+
  MMETSP0890-20130614|36197_1   7 DLKYLRFCELKNGRVAMLACAGFFVEELV-HFPGE--AYSNPDpI---GAIStVGLGVNAQILLACGIVELATIDTTYG--------DGEPGDYGFDPAGFLkgKSEDQINNMKLKELTHCRAAMMGFLGMCVQN 127
                  6899***********************66.65542..33445432...222323334667***********86666532........477**********6559*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:00.84
# Mc/sec: 390.83
//
Query:       MMETSP0890-20130614|36202_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-15   55.1   0.0    6.3e-15   54.9   0.0    1.0  1  PF00069.20 Protein kinase domain
    1.3e-08   34.2   0.0    1.3e-08   34.1   0.0    1.0  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   9.2e-19   6.3e-15      63     135 ..       2      74 ..       1      76 [. 0.96

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 9.2e-19
                  EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT- CS
   PF00069.20  63 llevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkg 135
                  +l+++ + +++y+vl ++++gdlf l++++g l e ++ ++++qi++gl+ lH+ g++H D+  eN++ld++ 
  MMETSP0890-20130614|36202_1   2 MLGCYADANTIYVVLPFCPHGDLFGLVEEHGGLPELTAFSYFQQIIKGLQTLHQLGLAHHDMSLENLMLDEQR 74 
                  6889999***************************************************************875 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.9e-12   1.3e-08      66     140 ..       2      74 ..       1      77 [] 0.95

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.9e-12
                  BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT CS
   PF07714.12  66 llgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek 140
                  +lg++ +++++++v+ ++++GdL  +++++    l   + +++ +qi kG++ L++  l H d++  N +l+e++
  MMETSP0890-20130614|36202_1   2 MLGCYADANTIYVVLPFCPHGDLFGLVEEH--GGLPELTAFSYFQQIIKGLQTLHQLGLAHHDMSLENLMLDEQR 74 
                  789999999*******************99..9999999********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.74
# Mc/sec: 249.35
//
Query:       MMETSP0890-20130614|36192_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-23   80.3   4.9      1e-22   80.2   1.5    2.5  2  PF03914.12 CBF/Mak21 family
     0.0021   17.8   1.0      0.099   12.3   0.1    2.5  2  PF12717.2  non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> PF03914.12  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.22   1.5e+03      41      72 ..     179     210 ..     140     219 .. 0.76
   2 !   80.2   1.5   1.5e-26     1e-22       2     162 ..     339     491 ..     338     493 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.22
   PF03914.12  41 dksellLrlldkal.ksdnlpvkrvaaFvKRll 72 
                  +++  lL ++   l  +d   ++++ a +KRll
  MMETSP0890-20130614|36192_1 179 QEA-RLLAIVVNKLgDRDGQAQAVAHACLKRLL 210
                  233.46777766676788878899999999998 PP

  == domain 2    score: 80.2 bits;  conditional E-value: 1.5e-26
   PF03914.12   2 siqalfllfqllsk.knldlsrFYraLYrllldpellnssdksellLrlldkalksdnlpvkrvaaFvKRllqvalqtppkfalgiLallskllkrypslkgll.nseereaedgvkeeededkgedkYdpeardpeyanadasslWElelLskhyhpsvakl 162
                  ++q+l  +++l+++ ++l+  rF+r+LY+lll+pel++++ k +l L+l ++al++d  ++ r+aa +KRl+ ++ +++p  ++++++l  +l +r+++l+++l n ++ +++++       + ++    + +rdp y  +     WEl++L +hyhpsv+ +
  MMETSP0890-20130614|36192_1 339 RVQSLYIIQKLIQNdQKLE-ARFFRSLYELLLAPELRRTN-KISLALNLCFTALSRDT-DAGRAAACLKRLVHATAHASPACCAAAVYLAANLRRRNQRLNNALeNLPDLSVSNQ-------QVNVLDDTLLKRDPRYVDSLDKRPWELQTLAHHYHPSVSIF 491
                  6899999999999934555.********************.9999*************.*********************************************55566544222.......2222233469****************************976 PP

>> PF12717.2  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   1.4e-05     0.099       8     100 ..     128     217 ..     124     289 .. 0.87
   2 !    3.6   0.1    0.0066        45      28      72 ..     325     368 ..     315     444 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
    PF12717.2   8 aiialgDLcvrypnlvdpyleklyacLkdedalvRktallvlshLiledmvKvkgqlflemlkllaDedeeiralAelffsellkkknpnlly 100
                  + ++l+++ +r +++ + +++ + a+ k++   +Rk  + + ++L++    +    l   ++  l D+d + +a+A++++++ll k + +++ 
  MMETSP0890-20130614|36192_1 128 IAAILSYFEQRIKKIYNDFIDAVEASTKHQAVEIRKFGIETAATLLSARPEQEARLL-AIVVNKLGDRDGQAQAVAHACLKRLLAK-H-RAMT 217
                  567899999*****************************************9977766.***************************9.3.4444 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0066
    PF12717.2  28 eklyacLkdedalvRktallvlshLiledmvKvkgqlflemlkll 72 
                  + l++  +      R ++l+++ +Li++d  K++ ++f ++  ll
  MMETSP0890-20130614|36192_1 325 DALFRLSHTGTLPSRVQSLYIIQKLIQNDQ-KLEARFFRSLYELL 368
                  6677777777888899*************6.88888854444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1637  (0.119734); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:01.07
# Mc/sec: 1684.17
//
Query:       MMETSP0890-20130614|36211_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   13.7   0.0      0.049   13.4   0.0    1.1  1  PF13041.1 PPR repeat family


Domain annotation for each model (and alignments):
>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-06     0.049      20      49 ..      13      42 ..      10      43 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-06
    PF13041.1 20 eeAfklfneMkkrgikPnvyTYsilikglc 49
                 ++A + ++  +k + +P + TY++ i+g c
  MMETSP0890-20130614|36211_1 13 SAAHEAYSMIQKYQKRPFQTTYTTFISGSC 42
                 5789999999999999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       242  (0.0177004); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.72
# Mc/sec: 169.74
//
Query:       MMETSP0890-20130614|36200_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-35  122.2   4.7    1.9e-35  122.2   3.3    2.2  3  PF01545.16 Cation efflux family


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   3.3   1.4e-39   1.9e-35      27     267 ..       1     271 [.       1     286 [. 0.93
   2 ?   -0.5   0.0     0.033   4.5e+02     218     272 ..     284     337 ..     268     348 .. 0.78
   3 ?   -0.8   0.0     0.041   5.7e+02      84     146 ..     323     386 ..     320     393 .. 0.64

  Alignments for each domain:
  == domain 1    score: 122.2 bits;  conditional E-value: 1.4e-39
   PF01545.16  27 llaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliep.............................heidapeialgvalisllvnlllalllrragrksskrssalravalhvlgdalgslgvlvaallilftglnl.ylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalre...ldgvlsvhdlhvwkvgsskilveihie.vdpslsvseahevaeeiekalker 267
                  ++aDa+hslsd+is+ ++l+++r+a+ ppd++++ G++r+e++ga++++++l++++  +  +++  l e                               +++++ +al++a+is++ +  l+  +  ++++ +  s++l+a+a+h+++da++s+++l++++++ ++g  l + D i++ ++al++  +gl++l esl +L ++  d+ dl+++++ +++   + +v +v++++ + vg+  ++v+i ++ + p+ls s a +++e+++ +l + 
  MMETSP0890-20130614|36200_1   1 MIADAVHSLSDLISDAVTLISMRVARLPPDEDHQEGHERFETVGAMFVGAMLMAAGWGLGENALVSLREAwhstvaawsipinfssismhsfltspqqaLHSCFTNMALLAAIISIAAKESLFRGTMVVANRLR--SPVLKANAWHHRSDAMSSVVALLGIAATTIGGPRLaMCDGIAAAVVALMLGSMGLRVLVESLAELTDT-VDEADLAAVRAKIEQhseHLDVAQVRRCRGRLVGG-ALIVDIDVVpTRPDLSASAAAALSERVRLFLIKN 271
                  89***********************************************9999998888877655555555559999**99999999999999999999999999998989*****************999988..******************************9888899*******************************.6************99*9999***************.***************************9888665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.033
   PF01545.16 218 dgvlsvhdlhvwkvgsskilveihie.vdpslsvseahevaeeiekalkerfpgia 272
                  ++  +++dl++ + +  +++ ++++  +  ++  s ++++a+++ +al+++f+  +
  MMETSP0890-20130614|36200_1 284 QKDIEISDLRIKQATV-RVVPNLKVCpMVATVAPS-QDHIASSLSHALQNLFQSPH 337
                  6777899999999999.999999988777777444.78999999999999997655 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.041
   PF01545.16  84 fillesierliep.heidapeialgvalisllvnlllalllrragrk...sskrssalravalhvlg 146
                  + l++++++l++  h  ++  i+ +   i+ +vnl+l     r  +      ++ ++ r++a+hvl+
  MMETSP0890-20130614|36200_1 323 SSLSHALQNLFQSpHTYHRDTIVNY-DGIAPVVNLVLQTNDER--MTvkqLDQHAQTARSAAQHVLA 386
                  6678888888877444455555444.88888888888777766..2223444445555777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       747  (0.0546372); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.42s 00:00:01.23 Elapsed: 00:00:00.79
# Mc/sec: 1283.11
//
Query:       MMETSP0890-20130614|36210_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-61  205.7  23.4    7.2e-61  205.7  16.2    2.0  2  PF06991.6 Splicing factor, Prp19-binding domain


Domain annotation for each model (and alignments):
>> PF06991.6  Splicing factor, Prp19-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.7     0.086   1.2e+03      44      93 ..     100     149 ..      71     166 .. 0.66
   2 !  205.7  16.2   5.2e-65   7.2e-61       8     266 ..     174     443 ..     165     457 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.086
    PF06991.6  44 kkdratiqerereeekekeleeeakrkaeerkretkkiveeevkkelelk 93 
                  ++   +i+e+e e+   ++ +e a r+a+ r +  +++    v ++  + 
  MMETSP0890-20130614|36210_1 100 RAVEPAIEEKEDEQVAPEAEDEAAARRARVREKLRARVHATDVVQQVTIL 149
                  33334899999998888888888888888888877777665554444433 PP

  == domain 2    score: 205.7 bits;  conditional E-value: 5.2e-65
    PF06991.6   8 eeedeseeeeeeeseeeeetdseddmeprlkPvfvrkkdratiqerereeekekeleeeakrkaeerkretkkiveeevkkelelkkr..keleeaaledvetDdeneeeeYeaWklRelkRikRdreereelerekaeieklrnmteeeRraelrknpkvvtnkkkkgkykflqkYyhkGaffldee....devlkRdfseateedrldktiLPkvmqvknfgkagrtkythLvdeDtt....kfdsaWa...sekslnlkfkkklgGlrs 266
                    e ++eee++ e ++ ee  s dd e+r++Pvfv+++ r+t++e+ +++eke+e ++++  + e rk+e++ +v e+v++ ++++ +  k+   +++++ +  d ++e++Y aW+lRelkRi Rd + r ++  e ae e++r +t e R ae+ + +k   +k+ k k+kflqkY+hkGaff+de+    d+v kRd   at  d++d++ LPkv+qv++fg +grtkythL+d+Dtt    +++  W    s+++l++k+  k +G  +
  MMETSP0890-20130614|36210_1 174 RPESSVEEESSSEYSSAEEESSFDDEEARVRPVFVPRHSRNTVREAKELKEKEIESKAKEAARKEARKQESRALVAEVVQRSEQEEITssKTDGDSEIGAPDDVDSDDEVAYQAWRLRELKRIARDTQVRSAATNEAAETERRRHLTPEQRAAEDEALGKG--KKPPKAKWKFLQKYHHKGAFFMDEDslakDDVRKRDIDGATGIDKFDRDKLPKVLQVRDFGFSGRTKYTHLADQDTTfidrDYEYGWHkrkSNDTLRQKYDAKRAGQGD 443
                  456667776666555555555677889******************9999999999999999999****************988777764366666777777777779***********************************************9888875..78889******************98444456**********************************************66555667897222456678899555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1294  (0.094646); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.78
# Mc/sec: 1434.74
//
Query:       MMETSP0890-20130614|36213_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   27.4   5.7      2e-06   26.6   3.9    1.4  1  PF00641.13 Zn-finger in Ran binding protein and others
    0.00018   21.4   1.0       0.27   11.3   0.1    2.5  2  PF13499.1  EF-hand domain pair
    0.00037   20.0   0.7      0.058   13.2   0.1    3.5  3  PF13405.1  EF-hand domain
    0.00077   18.4   0.0        0.6    9.4   0.0    3.2  3  PF00036.27 EF hand
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.32   10.7   0.0    1.8  1  PF07026.6  Protein of unknown function (DUF1317)
        5.8    6.6   7.2       0.38   10.4   1.4    1.7  2  PF12773.2  Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF00641.13  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   3.9   8.6e-10     2e-06       1      29 [.     509     537 ..     509     538 .. 0.95

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 8.6e-10
   PF00641.13   1 regdWdCskClvqNfawstkCvaCqapkp 29 
                  + g+W+C++C v N +  ++C+aC++++p
  MMETSP0890-20130614|36213_1 509 KPGQWKCPSCDVLNAQDVNTCLACETSNP 537
                  68************************998 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.001       2.3      14      66 .]     338     386 ..     329     386 .. 0.89
   2 !   11.3   0.1   0.00012      0.27       3      65 ..     412     469 ..     404     470 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.001
    PF13499.1  14 dgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqai 66 
                  dg++    ++ ll  lg+    +e++++    ++ +D  ++G +s++ f +++
  MMETSP0890-20130614|36213_1 338 DGFVPISAIKTLLEDLGEGFYGDELDDQ----LELIDPQRSGSVSRDAFIHYY 386
                  8999999999999999988889999999....***************998876 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
    PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65 
                  ++aF+ lD   +g+l  + +++ll  +g+   +e+ +       k +D   dG++++e f+q+
  MMETSP0890-20130614|36213_1 412 RKAFDDLDAEANGTLAADQFQALLESMGTTYCNEDHDSCR---TKVIDA--DGCIDRELFVQW 469
                  679**************************99988888864...444444..677777766666 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.21   4.8e+02       5      25 ..     365     385 ..     361     390 .. 0.79
   2 !   13.2   0.1   2.5e-05     0.058       3      31 .]     412     439 ..     411     439 .. 0.93
   3 ?    1.2   0.0      0.18   4.2e+02      12      26 ..     456     470 ..     454     479 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.21
                  --GCC-------B---HHHHH CS
    PF13405.1   5 aFklfDkdgdGkidaeELrda 25 
                    +l+D  ++G ++++ +++ 
  MMETSP0890-20130614|36213_1 365 QLELIDPQRSGSVSRDAFIHY 385
                  56799*********9988776 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.5e-05
                  H---GCC-------B---HHHHHHH.H-- CS
    PF13405.1   3 reaFklfDkdgdGkidaeELrdaLrkslg 31 
                  r+aF+ +D   +G++ a++++++L  s+g
  MMETSP0890-20130614|36213_1 412 RKAFDDLDAEANGTLAADQFQALLE-SMG 439
                  89*********************98.765 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.18
                  -----B---HHHHHH CS
    PF13405.1  12 dgdGkidaeELrdaL 26 
                  d dG+id+e +++++
  MMETSP0890-20130614|36213_1 456 DADGCIDRELFVQWY 470
                  89******9888776 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.007        16       1      28 [.     361     388 ..     361     389 .. 0.88
   2 !    9.4   0.0   0.00026       0.6       2      29 .]     411     438 ..     410     438 .. 0.92
   3 ?   -0.7   0.0      0.43   9.9e+02      12      20 ..     456     464 ..     455     471 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.007
                  HHHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealkk 28 
                  el++  +++D  ++G +s + f++++++
  MMETSP0890-20130614|36213_1 361 ELDDQLELIDPQRSGSVSRDAFIHYYES 388
                  6888899**************9998765 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00026
                  HHHHHHHHCTTTSSEBEHHHHHHHHHHH CS
   PF00036.27   2 lkeaFkefDkDgdGkIsfeEfkealkkl 29 
                  +++aF+ +D   +G++  + f+++l+++
  MMETSP0890-20130614|36213_1 411 ARKAFDDLDAEANGTLAADQFQALLESM 438
                  589********************99875 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.43
                  TTSSEBEHH CS
   PF00036.27  12 DgdGkIsfe 20 
                  D dG I+ e
  MMETSP0890-20130614|36213_1 456 DADGCIDRE 464
                  89****987 PP

>> PF07026.6  Protein of unknown function (DUF1317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.32      10      32 ..     183     205 ..     172     229 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00014
    PF07026.6  10 vGavtfvYsvtkrGWlfPGlkvi 32 
                   Ga+  + s+tk+G+ fPG + +
  MMETSP0890-20130614|36213_1 183 TGAIDTPISITKSGFRFPGSSAV 205
                  69*****************9865 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       3.5     8e+03      17      21 ..     449     453 ..     439     460 .. 0.52
   2 ?   10.4   1.4   0.00017      0.38       1      23 [.     515     537 ..     515     549 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.5
    PF12773.2  17 qCgak 21 
                   C++k
  MMETSP0890-20130614|36213_1 449 SCRTK 453
                  34444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00017
    PF12773.2   1 CpqCgaenpsgarfCpqCgaklk 23 
                  Cp+C   n ++ + C +C ++ +
  MMETSP0890-20130614|36213_1 515 CPSCDVLNAQDVNTCLACETSNP 537
                  ********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       537  (0.0392774); expected 273.4 (0.02)
Passed bias filter:                      310  (0.0226741); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.93u 0.39s 00:00:01.32 Elapsed: 00:00:01.19
# Mc/sec: 1176.03
//
Query:       MMETSP0890-20130614|36227_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        7.4    6.2   8.9         14    5.3   4.7    2.7  2  PF01284.18 Membrane-associating domain


Domain annotation for each model (and alignments):
>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.23   3.1e+03     124     142 ..      33      51 ..      24      53 .. 0.61
   2 ?    5.3   4.7     0.001        14      49     102 ..     235     289 ..     143     342 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.23
   PF01284.18 124 aqaavaFgflavllflasa 142
                     a +Fg l+v+  ++sa
  MMETSP0890-20130614|36227_1  33 TRLALVFGLLCVAGGGLSA 51 
                  5556677777776555555 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.001
   PF01284.18  49 avfsflyalallvlylfk.nkyftsilwplidlivdalaallwlvafialaaglr 102
                  a ++f +a +ll++ l+   +++ +i ++++  ++ +la+  + +++i++++ lr
  MMETSP0890-20130614|36227_1 235 ALLCFSIATILLLVKLRLvASALSKIPPYIFMPLYRGLAIAANAICGIIFWDDLR 289
                  789*************99999999999999*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       557  (0.0407402); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.76
# Mc/sec: 1485.11
//
Query:       MMETSP0890-20130614|36239_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-16   60.5   0.0    1.8e-16   60.0   0.0    1.1  1  PF00117.23 Glutamine amidotransferase class-I
    2.8e-05   23.5   0.0      5e-05   22.7   0.0    1.5  1  PF07722.8  Peptidase C26
  ------ inclusion threshold ------
      0.046   13.1   0.0      0.067   12.6   0.0    1.2  1  PF07685.9  CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   3.9e-20   1.8e-16      28     177 ..      29     184 ..       6     191 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 3.9e-20
                  ETTGGHHHHHH.TTT--SEEEEE----TTTT....-CCHHHHHHHHGTTTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTT........SCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTT CS
   PF00117.23  28 pndadaeeile.klsnpdgilisgGpgspge....vegkieaikearenkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgk........aallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEsss 177
                  ++d+ +e++ + +l ++d+i++sg p s+++    +e+  e+i+ a+++k   LG C+G Ql+a+++gg v ++   ++ g+++  ++ +            l+   n++ + + H+++v++   lp++++++++s      +++    n i+++Q HPE+ +
  MMETSP0890-20130614|36239_1  29 QVDEGIEIPTDaELATYDAIVVSGSPKSVYDkepwIECVAELIRGAAKRKQKTLGLCFGFQLVAHSLGGSVAPAP--PDIGWEIGGRSVNVkleelrqyPYALDFSSNTFDICQFHRDVVDK---LPKEAHLLGSS-SR-CPHEVYAVGNHILAFQGHPEFAP 184
                  334444555555699*********************************************************766..6666665555433355566778667777789*************9...***********.44.59******************976 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.1e-08     5e-05      96     217 .]      68     181 ..      38     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.1e-08
                  HHHHHHH------BB------HHHHHHH------EEE.............EEEEEEE--ET-STTTTS-..HHHS--EEEEEEEE-BHHHHH-EEEEEEE----EEEEEEE--S-B----S-TT CS
    PF07722.8  96 laLiraalergvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavslekgsllarll..gaeeievnslHhqaikelakglevlAtaedgvieaieseeakyfvlgvQWHPE 217
                    Lir a++r+   lg C G+ql+   lgg++  + ++    ++        +s +v+le+ + +  +l  +++++ + ++H+  +++l k+ + l  +++   e + + +    +l++Q HPE
  MMETSP0890-20130614|36239_1  68 AELIRGAAKRKQKTLGLCFGFQLVAHSLGGSVAPAPPD--IGWE-----IGGRSVNVKLEELRQYPYALdfSSNTFDICQFHRDVVDKLPKEAHLLGSSSRCPHEVYAVGN---HILAFQGHPE 181
                  579********************************997..2232.....27889999999888877777444799*********************999999999998888...4799999998 PP

>> PF07685.9  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.067       3      59 ..      40      95 ..      38     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
    PF07685.9  3 elledadlvilpGgkntlqdlallresgldealkeaaeaggpvlgiCGGyqmLgeki 59
                 ++l+ +d++++ G+ + + d++    + ++e ++ aa+++ + lg C G+q+  +++
  MMETSP0890-20130614|36239_1 40 AELATYDAIVVSGSPKSVYDKEPWI-ECVAELIRGAAKRKQKTLGLCFGFQLVAHSL 95
                 67889*********88888887654.799**********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.52
# Mc/sec: 1073.75
//
Query:       MMETSP0890-20130614|36242_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-49  167.1   0.0    8.5e-49  166.1   0.0    1.5  1  PF03028.10 Dynein heavy chain and region D6 of dynein motor


Domain annotation for each model (and alignments):
>> PF03028.10  Dynein heavy chain and region D6 of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.0   6.2e-53   8.5e-49     469     680 ..       4     250 ..       1     251 [] 0.84

  Alignments for each domain:
  == domain 1    score: 166.1 bits;  conditional E-value: 6.2e-53
   PF03028.10 469 ekdplvvvlvqEiermnillkeirrslkelskglkGeltiteeleellkallkdkvPas.......WakkaypslkgLaswlsdllkRikqlekwtedllkpktvwlsglfnpqsfltairQsvarknkwpLdklalqvevtkkekeetesa....peegvyveGlfleGarw......dlke..........kllaesklkellsalpviwvkavea..........dkkeeksvyecPvYktkaRke 680
                  +k p+vv+++qE+ rmn+l++ei rsl+el+kgl+G+l +t+++e+l+kall+ + P         W+k+a+ps+k+L   ++d+l R+ ql +wte+l +p +vwlsglfnp ++lt++ Q ++r+   pLdk++ q+ vt+ ++++   a    pe+g+y++Glf+eGarw      +  e          ++l+es+lkel++++pv++++av++             +++++yecPv+ t  R++
  MMETSP0890-20130614|36242_1   4 DKGPYVVCALQECRRMNVLTSEILRSLQELEKGLNGQLNMTQSMEDLSKALLLCQWPGRdpfsqcgWEKRAWPSKKALVPQFTDMLLRHAQLTRWTEELITPMSVWLSGLFNPMAYLTGVTQVTSRATGEPLDKMTQQTFVTTYKDPSAIPAnaqfPENGAYIHGLFIEGARWpsldeiE--EveniggapvgGTLLESRLKELMPPMPVLYIRAVPVspsweasavgYLRHQEDIYECPVFITTMRGP 250
                  689*****************************************************9744444555***************************************************************************987766443212344*****************4443220..122233333336799******************998555543333223578899*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.67
# Mc/sec: 897.74
//
Query:       MMETSP0890-20130614|36244_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 369.27
//
Query:       MMETSP0890-20130614|36237_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-31  108.0   0.3    1.4e-16   60.4   0.0    2.5  2  PF12796.2  Ankyrin repeats (3 copies)
      2e-29   99.7   4.9    1.2e-08   34.2   0.1    5.6  5  PF00023.25 Ankyrin repeat
      3e-24   84.8   3.3    4.1e-11   42.9   0.0    3.7  3  PF13637.1  Ankyrin repeats (many copies)
    6.8e-22   76.8   5.3    4.4e-09   36.1   0.1    3.5  3  PF13857.1  Ankyrin repeats (many copies)
    3.7e-20   69.8   1.6    6.5e-05   22.6   0.0    5.1  5  PF13606.1  Ankyrin repeat
    2.6e-06   27.0   0.0    3.3e-05   23.4   0.0    2.4  1  PF00027.24 Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.025   14.2   0.3      0.046   13.4   0.2    1.3  1  PF07889.7  Protein of unknown function (DUF1664)
       0.78    7.9   4.3       0.08   11.1   0.1    1.4  2  PF09730.4  Microtubule-associated protein Bicaudal-D


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   8.4e-20   1.4e-16       2      85 ..     312     404 ..     311     406 .. 0.80
   2 !   45.3   0.0   4.3e-15   7.3e-12       1      80 [.     415     498 ..     415     508 .. 0.91

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 8.4e-20
    PF12796.2   2 hlAaengnlelvklLle..kg.advdl.......getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                  h+Aa  + +el +lL +  kg  d++        g+t +hlAa++g++e+++lLl++ga vn +d  g+tpLh Av  gh  ++ lL+++ga +
  MMETSP0890-20130614|36237_1 312 HIAAIGDVVELRRLL-DlvKGsQDLNKeipgdydGRTSIHLAAANGRIECCRLLLDRGAAVNVQDRFGRTPLHEAVLGGHDQVISLLVSNGAQL 404
                  555555555554444.333443555556676778999******************************************************975 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 4.3e-15
    PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLle 80 
                  L+ A+ + +  l+   l++ga+v      ++t+LhlAa+ gnl  ++ Ll+++ad+  +d  g+tp   A+++gh+ ++  Ll+
  MMETSP0890-20130614|36237_1 415 LCEAVVTSDQPLITRYLDAGANVSAtdydNRTALHLAASEGNLPLCRQLLSRNADPKVTDRWGHTPADEAAQFGHTGAIFELLK 498
                  678999999999999*********99999999*******************************************988877775 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   6.9e-12   1.2e-08       1      32 [.     344     375 ..     344     376 .. 0.97
   2 !   29.7   0.0   1.9e-10   3.2e-07       2      29 ..     378     405 ..     377     408 .. 0.94
   3 ?    3.3   0.0     0.044        75       9      32 ..     418     441 ..     412     442 .. 0.74
   4 !   26.5   0.0   1.9e-09   3.2e-06       1      32 [.     443     474 ..     443     475 .. 0.94
   5 ?    3.6   0.0     0.035        59       2      26 ..     477     501 ..     476     507 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 6.9e-12
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  dG+T  HlAa +g++e+++lLl++GA +n+qd
  MMETSP0890-20130614|36237_1 344 DGRTSIHLAAANGRIECCRLLLDRGAAVNVQD 375
                  8******************************9 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.9e-10
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdln 29 
                  G+TPLH A+l g+ +v++lL+s+GA l 
  MMETSP0890-20130614|36237_1 378 GRTPLHEAVLGGHDQVISLLVSNGAQLI 405
                  9************************885 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.044
                  HHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   9 AalrgnlevvklLlsqGAdlnaqd 32 
                  A+   +   ++  l++GA++ a+d
  MMETSP0890-20130614|36237_1 418 AVVTSDQPLITRYLDAGANVSATD 441
                  555556666777799*******98 PP

  == domain 4    score: 26.5 bits;  conditional E-value: 1.9e-09
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  d +T+LHlAa+ gnl  ++ Lls++Ad+ ++d
  MMETSP0890-20130614|36237_1 443 DNRTALHLAASEGNLPLCRQLLSRNADPKVTD 474
                  689************************98877 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.035
                  SCBHHHHHHHTTHHHHHHHHHHTTS CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGA 26 
                  G TP   Aa+ g++  +  Ll++ A
  MMETSP0890-20130614|36237_1 477 GHTPADEAAQFGHTGAIFELLKCAA 501
                  899999***************9755 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   2.4e-14   4.1e-11       1      53 [.     345     397 ..     345     398 .. 0.93
   2 !   25.3   0.1   8.3e-09   1.4e-05       3      54 .]     413     464 ..     412     464 .. 0.94
   3 !   31.9   0.0   6.9e-11   1.2e-07       1      50 [.     444     493 ..     444     499 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.4e-14
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  g+t +h aa+ gr+e+++lLl++g+ +n +d++G+t+Lh A+l+g+ +++ lL
  MMETSP0890-20130614|36237_1 345 GRTSIHLAAANGRIECCRLLLDRGAAVNVQDRFGRTPLHEAVLGGHDQVISLL 397
                  6899*****************************************97777776 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 8.3e-09
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklLl 54 
                  ++L  a+  ++ +l+   l+ g+++ +td +++taLh+Aa+ gn+ +++ Ll
  MMETSP0890-20130614|36237_1 413 SCLCEAVVTSDQPLITRYLDAGANVSATDYDNRTALHLAASEGNLPLCRQLL 464
                  578889999999************************************9997 PP

  == domain 3    score: 31.9 bits;  conditional E-value: 6.9e-11
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieil 50 
                  ++taLh aa+ g+l+l++ Ll++++d+  td+ G t+ + Aa++g+  ++
  MMETSP0890-20130614|36237_1 444 NRTALHLAASEGNLPLCRQLLSRNADPKVTDRWGHTPADEAAQFGHTGAI 493
                  58********************************************6443 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   2.6e-12   4.4e-09      14      55 ..     343     384 ..     337     385 .. 0.91
   2 !   21.6   0.0   9.4e-08   0.00016       1      40 [.     364     402 ..     364     408 .. 0.91
   3 !   36.0   0.4   2.9e-12     5e-09       2      55 ..     431     483 ..     430     484 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 2.6e-12
    PF13857.1  14 eggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldl 55 
                    g+t +hlAa +g+ e++rlLl++ga+ n++d +g+t+l+ 
  MMETSP0890-20130614|36237_1 343 YDGRTSIHLAAANGRIECCRLLLDRGAAVNVQDRFGRTPLHE 384
                  4566************************************85 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 9.4e-08
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapga 40 
                  Ll++g a+vn +d++g+tpLh A+ gg+ +v+ lL+ +ga
  MMETSP0890-20130614|36237_1 364 LLDRG-AAVNVQDRFGRTPLHEAVLGGHDQVISLLVSNGA 402
                  89***.*****************************95555 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 2.9e-12
    PF13857.1   2 lehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldl 55 
                  l++g ++++ ++d+  +t+LhlAa+ g+l+++r Ll ++ad++++d +g t+ d 
  MMETSP0890-20130614|36237_1 431 LDAGaNVSATDYDN--RTALHLAASEGNLPLCRQLLSRNADPKVTDRWGHTPADE 483
                  89995555555555..5***********************************985 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.8e-08   6.5e-05       1      29 [.     344     372 ..     344     373 .. 0.96
   2 !   19.1   0.0   5.3e-07   0.00091       1      28 [.     377     404 ..     377     406 .. 0.93
   3 ?   -3.2   0.0         8   1.4e+04      20      29 ..     429     438 ..     423     439 .. 0.76
   4 !   19.6   0.0   3.7e-07   0.00064       1      28 [.     443     470 ..     443     472 .. 0.93
   5 ?    3.4   0.0      0.06     1e+02       2      24 ..     477     499 ..     476     504 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 3.8e-08
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadin 29 
                  +G+T +hlAa ngrie +++Ll++ga +n
  MMETSP0890-20130614|36237_1 344 DGRTSIHLAAANGRIECCRLLLDRGAAVN 372
                  79************************999 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 5.3e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                  +G+TpLh A+  g+ +++++L++nga++
  MMETSP0890-20130614|36237_1 377 FGRTPLHEAVLGGHDQVISLLVSNGAQL 404
                  59***********************986 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 8
    PF13606.1  20 aLlengadin 29 
                   +l++ga+++
  MMETSP0890-20130614|36237_1 429 RYLDAGANVS 438
                  5799999997 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 3.7e-07
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadi 28 
                  +++T+LhlAas g++ l++ Ll++ ad+
  MMETSP0890-20130614|36237_1 443 DNRTALHLAASEGNLPLCRQLLSRNADP 470
                  579***********************97 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.06
    PF13606.1   2 GnTpLhlAasngrielveaLlen 24 
                  G Tp + Aa++g++ ++ +Ll++
  MMETSP0890-20130614|36237_1 477 GHTPADEAAQFGHTGAIFELLKC 499
                  789***********988887775 PP

>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.9e-08   3.3e-05       3      91 .]      88     223 ..      86     223 .. 0.96

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.9e-08
                  EE----EEE-TT-B--EEEEEEE-EEEEEEE-----EE...............................................EEEEE-TTEECSGGGCCSSSB-SSEEEEEEEEEEEEEEHHHHHHHHCC-HH CS
   PF00027.24   3 sfkkgevifkeGdpadslyiilsGkvkvykndedgkes...............................................ilaelgpGdffGelalltgeprsatvvaltdvevlvipredfrelleknpe 91 
                  sf kg  ++k Gd  ++ly+il+G+++++ + ++g  +                                                + +++pG++fG  +++   + ++t++a t  +v +++ +d rel ++np+
  MMETSP0890-20130614|36237_1  88 SFVKGLDVVKAGDLQSRLYVILEGHASLHLEPGNGLWKqtslssnnrrqsstyqndasvnqndgeesdsssssssdddddemtnsAVLIMHPGACFGAPGFVSLVQQPYTIRARTLLRVISLDEADRRELERNNPN 223
                  57778889************************99988899****************************************************************************************99999985 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   2.7e-05     0.046      38     121 ..     229     315 ..     227     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.7e-05
    PF07889.7  38 krnladAvasvtkqlekvseavasakkhLsqrid..nlddkldeqkeisk.eikeevteiredlsaikedvkslkqvvegLeskles 121
                  ++n+    ++++++ e++s+++++    + +ri   +l  +l++ +++s+ ++   v e+r  ++ai++d+ +  +++++L  +++ 
  MMETSP0890-20130614|36237_1 229 RKNVIAVAKEIAEHAESLSKQITNGTAAMQSRIRlpKLHMSLERPTNVSRdKVIALVREVRAVIQAIQSDITTASHALSALYCHIAA 315
                  6777778899**************9999999875449***********9736999********************999999877766 PP

>> PF09730.4  Microtubule-associated protein Bicaudal-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.8       2.3   3.9e+03     188     213 ..     138     163 ..     124     177 .. 0.36
   2 ?   11.1   0.1   4.7e-05      0.08     384     488 ..     227     338 ..     199     364 .. 0.65

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 2.3
    PF09730.4 188 vaslsslelkldslkiseeeeasaee 213
                  +++ ++++++ ++ + s+ +++s+++
  MMETSP0890-20130614|36237_1 138 STYQNDASVNQNDGEESDSSSSSSSD 163
                  22222222222222222222222222 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4.7e-05
    PF09730.4 384 eleeraedekdrleeevqklkeklssleksskedqekiaelekelrkltkva........gesqgsLnaaqdeLvalSeeLaqLyhhvclcnnetpnrvlldyyregkalaka 488
                  +l++++    + + e++++l++++++    + +++ ++ +l+ +l+  t+v+         e ++ ++a q+++ + S  L+ Ly h++   +    r lld ++ ++ l+k+
  MMETSP0890-20130614|36237_1 227 RLRKNVIAVAKEIAEHAESLSKQITNGTA-AMQSRIRLPKLHMSLERPTNVSrdkvialvREVRAVIQAIQSDITTASHALSALYCHIAAIGDVVELRRLLDLVKGSQDLNKE 338
                  33333333333344444444444444433.222233555555555555555500000011566788899************************************98877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       822  (0.0601229); expected 273.4 (0.02)
Passed bias filter:                      578  (0.0422762); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.03u 0.43s 00:00:01.46 Elapsed: 00:00:00.80
# Mc/sec: 1575.60
//
Query:       MMETSP0890-20130614|36245_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-10   38.8   0.0    1.7e-09   37.9   0.0    1.5  1  PF13640.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.3e-13   1.7e-09      14      99 ..       2     107 ..       1     108 [. 0.85

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.3e-13
    PF13640.1  14 pHvDnsesssrrltlllylndpew...........eeeGGelelypsd.r.....segvakeved.eevv....pkpgrlvlFksdrslHrvtpv....gaqgrrlaitgwf 99 
                  +H+D    ++  +++++ l+ p++            + GGe++l +++ +     + + +k +e    ++     ++g+l++F++ r++Hrv+pv    + ++ rl++tgwf
  MMETSP0890-20130614|36245_1   2 WHTDA---PHGPFAFVISLT-PDSyyaatdankpgFFTGGETVLLQPKiLdywrsF-DGNKGLEAnSIIQvippNQFGKLIIFDG-RFPHRVSPVsgtrDPRRGRLVLTGWF 107
                  9****...************.7777***999999999********99987899953.444444441334467878899*******.***********999999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.87
# Mc/sec: 724.42
//
Query:       MMETSP0890-20130614|36247_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-34  117.0   0.0    1.8e-33  115.9   0.0    1.6  1  PF04055.16 Radical SAM superfamily
    2.2e-28   97.8   0.2    6.8e-28   96.2   0.1    1.9  1  PF00919.15 Uncharacterized protein family UPF0004
    7.2e-15   54.4   0.1    1.4e-14   53.4   0.1    1.6  1  PF01938.15 TRAM domain
    3.5e-05   24.3   0.0    0.00012   22.6   0.0    2.0  1  PF00639.16 PPIC-type PPIASE domain
    6.1e-05   23.1   0.0    0.00014   21.9   0.0    1.6  1  PF13616.1  PPIC-type PPIASE domain
     0.0065   16.4   0.0      0.019   14.9   0.0    1.8  1  PF13353.1  4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.092   11.6   0.2       0.24   10.2   0.0    1.7  2  PF03074.11 Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   9.1e-37   1.8e-33       1     165 [.     323     504 ..     323     505 .. 0.93

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 9.1e-37
                  ES-CCEESS--TT-CCCTCHHHHHHHHHHHHHHHHHHHHHHTCS-CEEEEE---SGGGT.......TTHHHHHHHHHHCH........EECCEEEEEE-SSCH..HHHHHHHHHTT...-SEEEEEEESSSHHHHHHCCTCTS-HHHHHHHHHHHHHHSSET...EEEEEEEECTTTCHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx.xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
   PF04055.16   1 vvvtrgCnlrCsfCanpetsregrgrsrsveeileevkelkeekgvkevtltGgeplly.......pdfvellerlakla........lpgirialetngtlpd.eeileelaelg...vdrvslglesgdeekvlklmrrghtfeevlealeklreagikr...vvdfivglpgetdeeleellel 165
                  v++  gCn rC++C +p   ++g ++sr++++i+ e+ el +++g kevtl+G++ ++y         f++lle++a+           p +ri+++t++++   +++++++ae +   + +++++++sgd+   lklm+rg+++e++l+ +e+++++ i++   ++dfivg pgetd+ ++++l+l
  MMETSP0890-20130614|36247_1 323 VNIIYGCNERCTYCVVPA--TRGIEQSRQPQSIISEILEL-QNNGFKEVTLLGQNVDAYgrdlrqkVSFYQLLEQCAHAIrknsknssSPQFRIRFVTSHPRYMsDRVIDTIAENDdilMPVFHIPAQSGDDY-MLKLMGRGYNIEKYLRIIENIKAK-IPDatiTSDFIVGCPGETDDAFQNTLDL 504
                  57889************9..8*******************.9*****************888866644555555555544888*******************98**********99*****************.************************.*************************997 PP

>> PF00919.15  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.1   3.5e-31   6.8e-28       2      98 .]     179     277 ..     178     277 .. 0.95

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 3.5e-31
   PF00919.15   2 valetlGCqmNevdseelaallkkagyelvddaeeadvvlvnTCavrekAekkviqallelkalk..kpekkivvvGCmaerekeelakelpevdlvlg 98 
                  ++l+t+GCqmN +dse++ ++l++ g+e  +da+ea ++++nTC++r+kAe+kv+++l+ + + k  +++ +i+v+GC+a++e+e+l ++ pe+d+v+g
  MMETSP0890-20130614|36247_1 179 YYLTTMGCQMNAADSERIEGSLQAMGIEKNQDAKEAKIIILNTCSIRDKAEQKVYSHLGPYVNRKkkGEDLTIIVAGCVAQQEGERLIRRIPEIDIVMG 277
                  6899*******************************************************99888844599***************************98 PP

>> PF01938.15  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   7.4e-18   1.4e-14       1      61 []     650     712 ..     650     712 .. 0.96

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 7.4e-18
                  -------EEEEB----..------EE--.--EEE-----T...T-EEEEEEEEE-SSEEEEEEE CS
   PF01938.15   1 rsyvGstqeVlvegls..segegiGrtdngkvvfvpgdlpg.IGdfveVkItkakrqyLfGell 61 
                  ++y G+  eVlv  ++  ++ + +Grt  +k vf+ gd p+ IG+fv+V+It+a+ ++L+Gel+
  MMETSP0890-20130614|36247_1 650 QRYLGRIEEVLVDQRNpkRPKQIVGRTRGNKLVFFIGD-PKlIGQFVNVRITQARAFSLEGELI 712
                  689**********************************5.888********************96 PP

>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     6e-08   0.00012       1      94 [.      61     151 ..      61     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6e-08
   PF00639.16   1 HIliktkeseeekeeakakaeelleqlksge..dtFaelakeySddkssakngGdLgwfergqlppe...fekavfslke....geisepvetkfgyhiikve 94 
                  HIl++t          ++  eel++++++g+  + F+  ak  S  ++s  +gG Lgw+++ + ++e   + + +f l +    g+  + +et  g+h+++++
  MMETSP0890-20130614|36247_1  61 HILVAT----------RNLGEELKKRIEQGNedNLFEMYAKSIS-LCPSGREGGGLGWLQKTKSSQEdfpIISELFHLSPplrqGD-LALIETHLGIHLVRCD 151
                  666666..........7778888889988887667*********.*************9999666655447788888774342144.5999999999999986 PP

>> PF13616.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.4e-08   0.00014      12     115 ..      53     152 ..      43     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 7.4e-08
    PF13616.1  12 lpdsvkvshIlvdskgkasrtkeeakakAdsilkalkkgad...FaalAkkySdDksskangGdlgwfta..kgqmvkefedalfkl....kvgeiskvvktsfGyhIikvtd 115
                  l +s++vshIlv++           +++ ++++k++++g++   F+  Ak  S  +s    gG lgw+++  ++q + + +  lf+l     +g++ ++++t  G+h+++  d
  MMETSP0890-20130614|36247_1  53 LVESYRVSHILVAT-----------RNLGEELKKRIEQGNEdnlFEMYAKSISLCPS-GREGGGLGWLQKtkSSQEDFPIISELFHLspplRQGDL-ALIETHLGIHLVRCDD 152
                  6689*********7...........8899999999997663355*********9998.***********876446666667777775333379***.************9765 PP

>> PF13353.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.8e-06     0.019       9      60 ..     320     372 ..     313     394 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.8e-06
    PF13353.1   9 slf...vsGCnlkCkgCfnketwdfkkgkkftkelleeiiedlknekiegltllG 60 
                  + +   + GCn +C +C+ ++t   +++   +++++ ei+e l+n+  +++tllG
  MMETSP0890-20130614|36247_1 320 TAWvniIYGCNERCTYCVVPATRGIEQSR-QPQSIISEILE-LQNNGFKEVTLLG 372
                  55533467***************988877.68999999997.8899999***998 PP

>> PF03074.11  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.24     277     356 ..     350     430 ..     320     444 .. 0.79
   2 ?   -2.1   0.0      0.69   1.3e+03     123     162 ..     586     625 ..     570     636 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
                  EEEEHHHHHH-----TTTTHH-SS-GGGGGG-TTTHH..HHHHHHHHHH..HH------HHHHHHHHHHC-TT--SSS---H CS
   PF03074.11 277 eelsideiingkegefpgliplvrsyleeeevdvdtrcsiekylklisk..rasGelktaakylrefvakhPdykhdskitd 356
                   +  i+ei++ +++ f + ++l+ + ++    d ++++s ++ l+   +  r + +     ++   fv++hP y  d +i  
  MMETSP0890-20130614|36247_1 350 PQSIISEILELQNNGFKE-VTLLGQNVDAYGRDLRQKVSFYQLLEQCAHaiRKNSKNSSSPQFRIRFVTSHPRYMSDRVIDT 430
                  23569***********98.789999999999999999999999987654337888899999**9*************88754 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.69
                  ----SS-S--HHHHHHHHHHTTS--S--BCGGGS--TTT- CS
   PF03074.11 123 leklleegiderlakhiahlfirdPlvvfeekielddkts 162
                   ++l e +i ++ a+   h    dPl  f+e  ++  ++ 
  MMETSP0890-20130614|36247_1 586 PNELSELNIARDTARRAIHAARTDPLFAFDELAQIGPAQI 625
                  567888899999999999*9999******99888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:01.07
# Mc/sec: 1603.54
//
Query:       MMETSP0890-20130614|36257_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.88
# Mc/sec: 209.68
//
Query:       MMETSP0890-20130614|36260_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.70
# Mc/sec: 1502.86
//
Query:       MMETSP0890-20130614|36268_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.3    6.6   3.9        1.4    6.5   2.7    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        1.6    6.9  10.7        2.1    6.5   7.4    1.2  1  PF07093.6  SGT1 protein


Domain annotation for each model (and alignments):
>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.7   0.00021       1.4      68     124 ..      24      88 ..       2     131 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00021
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......... CS
   PF01496.14  68 evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelr........e 124
                  +  +   e ++  + +++ e+  ++Le+e++e  e++ +lr+++e+++e++ ++++        +
  MMETSP0890-20130614|36268_1  24 NASENVVEEKKFSNLVSNEETPRDRLEEEIAENAEENIELRKNEEDIDEEEWQKIEarmlgndeY 88 
                  666777888999999**********************************7633333223333331 PP

>> PF07093.6  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.4   0.00031       2.1     423     517 ..      18     119 ..       1     127 [. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00031
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07093.6 423 leevsekmkeflskksdleGaefadeldaddddddedeaededvsf.......deeefleflreaLglkkeeidsilddrqsdskdkddeeddeededesss 517
                  + +++++ +e + +++++ + + ++e   d ++++  e+ +e++++       deee  ++  ++Lg+ ++  +  +dd++++ +++d+ee+ ee ed++s+
  MMETSP0890-20130614|36268_1  18 VANFMDNASENVVEEKKFSNLVSNEETPRDRLEEEIAENAEENIELrkneediDEEEWQKIEARMLGNDEYGGELYEDDEDDEFEAMDEEEELEEEEDMTSN 119
                  666667777777777777777777777777777776677777777777777779******************999999999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1035  (0.0757022); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.45s 00:00:01.06 Elapsed: 00:00:00.63
# Mc/sec: 768.36
//
Query:       MMETSP0890-20130614|36275_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       612  (0.044763); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.88
# Mc/sec: 329.50
//
Query:       MMETSP0890-20130614|36277_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-40  138.0   0.0    3.5e-40  137.7   0.0    1.0  1  PF05996.7 Ferredoxin-dependent bilin reductase


Domain annotation for each model (and alignments):
>> PF05996.7  Ferredoxin-dependent bilin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   2.6e-44   3.5e-40       9     227 ..      36     266 ..      29     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 137.7 bits;  conditional E-value: 2.6e-44
                  TT.S--EE---GGG---B---------EEEEEEEE-SS.EEEEEEEEEE-----EEEEEEEEE-TT-.---BE-EEEEE----...--EEEE--B--...STTS---HHHHHHHHT--.-..---..SSB--------.-S-TT-EEE-....--SHHHHHHHHHHHHHHHHHHHHHHHH----...-HH.HHHHHH---HHHHHHHTT-HHHHHHHHHH---HHHHHHHHHTTS CS
    PF05996.7   9 eelleleplpvpeeleeieskkegekvtienelwqsrk.lRklrlelvdageslqvlncvifPdpey.dlPifGaDlvalpag..kilaailDlqPl...sqdkdykekyvekLkklkekaseal..peerklpedatqyFSpgvlfar....esneeeeerlleafkeYlqvyldlleeaepe...adaeeeaeileaQkaYlayqaekDparglleslfgeewaeryieevLF 227
                  e  ++ ++l++p++l+  +++ +  +  + ++++  ++ +R++r+++ d+g s+qv+n++++P+ +  d+P++G+Dl++++a+  + l+ ++D qP    + +++  ++ +++L+++++k+ ++l  +++ k +ed++ yFS+ +l+      ++ + ++++ll+af++Yl++y+dl+ +   +   + +e+++  le + aY+++ a +Dpa++l++s+fge++a +y++++LF
  MMETSP0890-20130614|36277_1  36 EA-MGAKELELPDHLAFAANEAK--GSRMGSRCFLIDGiFRRIRMTYFDGGTSIQVFNSLWYPSLDRsDAPLLGIDLLSFGANkaNRLLCVIDAQPSagrNPQTQQVSHDTSRLAAIHAKYVNTLggTPSAKWYEDSR-YFSSQMLYGTtetlGGLDGIAQTLLPAFQSYLDAYIDLVTSVDCNrieKIQEHTDLTLERHAAYDEFNAARDPAHKLFTSYFGEHFAHDYVHNFLF 266
                  44.5999*************999..899999999999857************************9877*********8887651157899*******7544444455566889*********9984456789999999.********99888888999*******************99887765446777888999************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 1095.48
//
Query:       MMETSP0890-20130614|36290_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-08   31.6   0.0    2.2e-07   30.4   0.0    1.7  1  PF02735.11 Ku70/Ku80 beta-barrel domain
    1.2e-07   31.2   0.1    3.9e-07   29.6   0.0    1.8  2  PF03731.10 Ku70/Ku80 N-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> PF02735.11  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.2e-11   2.2e-07      76     176 ..     346     467 ..     285     487 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.2e-11
                  HTT--S-.........---EE---EEGG.GS-CCG--....S--EE----TTTEE--HHHHHHHHHHHHHCTEEEEEEE--S......SS---EEEEEE----EE.EE----EEEE---GGG CS
   PF02735.11  76 evkeess.........kglellgFvkrs.rlkreyyl....dssyfivpddqttegStaafsaLleallerdkaaicryvsr......skskprlvaLvPqekek.elpeglvlvqLpfadd 176
                  +  + ++         + l +lgFv+ + +++++ ++    +++  +  dd+++++S++a++a++ a+ +++++a++ y  r      ++s+p++v++ P+ +    +p gl ++ Lpf+ +
  MMETSP0890-20130614|36290_1 346 QCAQLDQvmpdnlqgdGELLILGFVSADeTIHKSEFFlsrgKRTDVLIGDDDEVPASSEALAAIVAAMSKKNQVAVALYATRslandkNRSNPCFVLIEPKISTApPTPSGLLIHCLPFQHE 467
                  555554445555588899*********9767766555344456778999*******************************983333324689*********98767888**********987 PP

>> PF03731.10  Ku70/Ku80 N-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   5.7e-11   3.9e-07       2     151 ..      27     177 ..      26     223 .. 0.80
   2 ?   -3.9   0.0      0.96   6.6e+03      41      58 ..     414     431 ..     410     437 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 5.7e-11
                  EEEEEE-SCGGGS--SSSS-HHHHHHHHHHHHHHHHHHTT--.-EEEEEEE---S-BST--TT-STT-EEEEECC---HHHHHHHHTT---..........HHHH..------HHHHHHHHHHHHHCHH-SS..--SEEEEEEEES-SS--....-CCCHHHH CS
   PF03731.10   2 vvfvvDaspaMfesskgseapfeqalkciaellsrkvisnsk.Dligvvlygtdesenkaekegyenvtvlrdldlpgaellkelkqileqedk.......vtklasdssqgdllsaLivcldllqketgkk..klskkrillftdlddpfe...dddqldti 151
                  +v+++Das +M + +++    f  a+k+i++++   +  + + Dlig+++yg + s+           + + +l +   + ++ lk+ le+ed+        +k+   ++   l++aL ++   l+k+  ++  k+  +r++lft + + +    +++q + i
  MMETSP0890-20130614|36290_1  27 TVYCIDASDTMRKDHPK---RFRGAVKYIEKIMREMIKEETNpDLIGIIVYGDRGSKR---------AVRCVSLGKVRGDAILTLKSLLEKEDAidiiasdENKTFDYHQYPALRNALFYARIQLEKQSKGSrrKKIIQRVILFTCVESTTIdldSESQREMI 177
                  89**********55554...578*********************************97.........344467777777888888888888777777999999999999999******999988999875541145558999999888877766555555554 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.96
                  T---EEEEEEE---S-BS CS
   PF03731.10  41 nskDligvvlygtdesen 58 
                  ++k+ ++v ly t++  n
  MMETSP0890-20130614|36290_1 414 SKKNQVAVALYATRSLAN 431
                  678999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.36s 00:00:01.39 Elapsed: 00:00:01.72
# Mc/sec: 929.28
//
Query:       MMETSP0890-20130614|36308_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       559  (0.0408865); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.42s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 734.88
//
Query:       MMETSP0890-20130614|36311_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   56.5   0.0      4e-15   55.5   0.0    1.6  1  PF08698.6 Fcf2 pre-rRNA processing


Domain annotation for each model (and alignments):
>> PF08698.6  Fcf2 pre-rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.9e-19     4e-15       5      99 .]      97     185 ..      87     185 .. 0.93

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.9e-19
    PF08698.6   5 kttlsnWfnmkkpeltpelkrdlkllklrnvldpkrfykkskkekkipkffqvGtivegksefysksrltkkrrkkslvdellkdsetkkylkrk 99 
                   t++  Wf ++++  +++l+ d k+l  rn+ldpkrfykk +       f  +Gt++ gk e +s + l kk+rk++l+ +ll++++t+ y+krk
  MMETSP0890-20130614|36311_1  97 STAGPGWFHLPRS--SDALQTDTKVLAARNFLDPKRFYKKTDPAA---TFSVIGTVIAGKFEPRS-ATLRKKERKSTLAAQLLAEDSTRYYTKRK 185
                  577889***9976..79************************9997...9999************9.999************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.80
# Mc/sec: 644.02
//
Query:       MMETSP0890-20130614|36321_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      313  (0.0228935); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.41s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|36333_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   12.5   0.3       0.17   11.6   0.2    1.5  1  PF03523.8 Macrophage scavenger receptor


Domain annotation for each model (and alignments):
>> PF03523.8  Macrophage scavenger receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.2e-05      0.17      15      46 ..      63      94 ..      59      97 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.2e-05
    PF03523.8 15 LiDserFQNFSvtTDQRlnDvLlQLnsLissv 46
                  +D+    NF +  D + n vLlQLn   +s+
  MMETSP0890-20130614|36333_1 63 FLDALMCANFDLPRDDKVNFVLLQLNYFWQSF 94
                 57888889******************876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.72
# Mc/sec: 685.62
//
Query:       MMETSP0890-20130614|36335_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-10   39.7   0.1    3.7e-10   39.6   0.1    1.0  1  PF00125.19 Core histone H2A/H2B/H3/H4
    0.00021   21.0   0.0    0.00025   20.7   0.0    1.1  1  PF02969.12 TATA box binding protein associated factor (TAF)
     0.0019   18.0   0.0     0.0025   17.7   0.0    1.2  1  PF00808.18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
  ------ inclusion threshold ------
       0.01   15.4   0.1      0.012   15.2   0.0    1.1  1  PF07524.8  Bromodomain associated
      0.011   15.3   0.0      0.012   15.2   0.0    1.1  1  PF02291.10 Transcription initiation factor IID, 31kD subunit


Domain annotation for each model (and alignments):
>> PF00125.19  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   1.3e-13   3.7e-10      27      75 .]       1      49 [.       1      49 [. 0.96

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.3e-13
   PF00125.19 27 risaealvalqealedlleeiledAgllaehakrktitprdiqlAvrld 75
                 ris+  ++  + +l+ +le++++d++ ++eha+rkt+t+ d+ +A++++
  MMETSP0890-20130614|36335_1  1 RISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQ 49
                 8999999***************************************975 PP

>> PF02969.12  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.3e-08   0.00025      37      66 .]      18      47 ..      12      47 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 9.3e-08
                 HHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
   PF02969.12 37 lkeivqealkfmrhskRqkLtvaDvdsALr 66
                 l +++++++ +++h++R++ t+ Dv +AL+
  MMETSP0890-20130614|36335_1 18 LENVIRDSVTYTEHARRKTVTAMDVVYALK 47
                 6789************************98 PP

>> PF00808.18  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.2e-07    0.0025      33      65 .]      14      46 ..      10      46 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.2e-07
                 HHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
   PF00808.18 33 veefieelaseAaeickkekrKTikaediklav 65
                 ++ f+e + + ++ ++++++rKT++a d+  a+
  MMETSP0890-20130614|36335_1 14 LKVFLENVIRDSVTYTEHARRKTVTAMDVVYAL 46
                 6789************************98775 PP

>> PF07524.8  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   4.3e-06     0.012      34      70 ..      12      48 ..       8      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.3e-06
    PF07524.8 34 diaqsYiqelgrqakrfaehagRseptlkDvvltLke 70
                 ++++ +++++ r+   + eha+R ++t  Dvv +Lk+
  MMETSP0890-20130614|36335_1 12 GVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKR 48
                 567778888999999999*****************98 PP

>> PF02291.10  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   4.5e-06     0.012      46      75 ..      18      47 ..      12      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHHHHHTT-SSB-HHHHHHHHH CS
   PF02291.10 46 tqkilddakvysehakkanieveDvrlAia 75
                  ++++ d+  y+eha+++++ + Dv  A +
  MMETSP0890-20130614|36335_1 18 LENVIRDSVTYTEHARRKTVTAMDVVYALK 47
                 6789*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       337  (0.0246489); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.77
# Mc/sec: 180.50
//
Query:       MMETSP0890-20130614|36340_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   13.3   0.0      0.034   12.9   0.0    1.2  1  PF05291.6 Bystin


Domain annotation for each model (and alignments):
>> PF05291.6  Bystin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-06     0.034      76     105 ..      31      59 ..      23      66 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-06
    PF05291.6  76 lenWedileltkPekWtpnavyeatrlFvs 105
                  l++W+++l+lt+P++W +++  + tr++ s
  MMETSP0890-20130614|36340_1  31 LRTWRQLLNLTEPSAWPSESKLQ-TRIYGS 59 
                  689*************8887665.888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       184  (0.0134582); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 335.49
//
Query:       MMETSP0890-20130614|36348_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-19   70.0   0.0    2.8e-19   69.0   0.0    1.5  2  PF01903.12 CbiX
  ------ inclusion threshold ------
      0.023   13.6   0.0      0.035   13.0   0.0    1.3  1  PF06180.6  Cobalt chelatase (CbiK)
      0.081   11.7   0.0      0.095   11.5   0.0    1.2  1  PF00762.14 Ferrochelatase
      0.095   12.4   0.0       0.24   11.2   0.0    1.7  1  PF13188.1  PAS domain


Domain annotation for each model (and alignments):
>> PF01903.12  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   8.1e-23   2.8e-19       1     103 [.      48     153 ..      48     155 .. 0.93
   2 ?   -2.9   0.0         2   6.8e+03      72      83 ..     162     173 ..     156     198 .. 0.54

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 8.1e-23
                  ----SSHHCCHHHHHHHHHHH---..S--EES-SCCC-SS-CC--CHHHH-SBSEEEEEE-SS----TTTTHHHHH-----------EEEE-------.HHHHHHH CS
   PF01903.12   1 hGsrdpesnedveklaeelreklp..vpvelgflelaepsleeavrelaeqgvkrivvvPlflfaGvhvkedIpeeleeakeahpdveveytepLGth.plvaevl 103
                  hGs+ +++n+++e+++e++ +  +   +++++++e+a+ps+ ea++ +++qg++ +v  P+fl  G+h ++d+p++ +ea ++hp+v+ ++tepLG + pl+ +v+
  MMETSP0890-20130614|36348_1  48 HGSKVEKANRRLEDICEMYAKDKGrdWIIRPAHMEIASPSISEAFDDCVAQGCDLVVCHPFFLGIGRHPTQDVPRLFAEASAKHPQVQTIVTEPLGHDiPLILNVV 153
                  9*****************99988885566*******************************************************************8856666665 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2
                  HHH--------- CS
   PF01903.12  72 peeleeakeahp 83 
                   ++l+ + +++p
  MMETSP0890-20130614|36348_1 162 DQALTSVSQEPP 173
                  333333333333 PP

>> PF06180.6  Cobalt chelatase (CbiK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.035     133     217 ..      32     120 ..      17     139 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
    PF06180.6 133 deierarkdealvfvgHGtehe.snavyaeldkvlkekdfkqvvv..gtve.gyPeveevieelkkkgikevkliPlmlvAGdHaknDm 217
                  ++ +++ k+  ++ v HG++ e +n + + + ++  + ++++ ++  + +e + P+++e  +    +g+  v   P++l  G H ++D+
  MMETSP0890-20130614|36348_1  32 ETTKNTAKKVGVIVVDHGSKVEkANRRLEDICEMYAKDKGRDWIIrpAHMEiASPSISEAFDDCVAQGCDLVVCHPFFLGIGRHPTQDV 120
                  455666689999*******97527888999999999988888887444555589*********************************97 PP

>> PF00762.14  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05     0.095      51     147 ..      34     133 ..       6     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.8e-05
   PF00762.14  51 lkkvaeaYkki..gggSPlneitrkqaeaLeaelaergadvkvyla.mrywepsiedalkelkadgvdrvlvlplypqysasttgsyledlakalkksre 147
                  +k+ a++   i  + gS + + +r++++  e   +++g d+ +  a m   +psi++a ++  a+g+d v++ p +   ++  t+ + + +a+a +k+ +
  MMETSP0890-20130614|36348_1  34 TKNTAKKVGVIvvDHGSKVEKANRRLEDICEMYAKDKGRDWIIRPAhMEIASPSISEAFDDCVAQGCDLVVCHPFFLGIGRHPTQDVPRLFAEASAKHPQ 133
                  5556666666677899**********99888888888899999876599*************************99888888888888888888777433 PP

>> PF13188.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.1e-05      0.24      12      43 ..      41      75 ..      40      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.1e-05
    PF13188.1 12 dgiivvd.gdrilevNpaalrllG.ys.llgellg 43
                 +g+ivvd g+++  +N++ ++++  y  ++g+++ 
  MMETSP0890-20130614|36348_1 41 VGVIVVDhGSKVEKANRRLEDICEmYAkDKGRDWI 75
                 79*****999*************844477777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       470  (0.0343768); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.79
# Mc/sec: 661.27
//
Query:       MMETSP0890-20130614|36352_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-22   77.4   0.1    1.3e-21   76.3   0.0    1.6  2  PF01876.11 RNase P subunit p30
     0.0058   16.5   0.2      0.012   15.5   0.2    1.4  1  PF10244.4  Mitochondrial ribosomal subunit
  ------ inclusion threshold ------
       0.13   11.1   0.1       0.44    9.4   0.0    1.9  2  PF12415.3  Poxvirus DNA dependent RNA polymerase


Domain annotation for each model (and alignments):
>> PF01876.11  RNase P subunit p30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.7   3.2e+03      35      51 ..      47      63 ..      23      69 .. 0.61
   2 !   76.3   0.0   2.8e-25   1.3e-21       2     117 ..      76     186 ..      75     207 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.7
                 HHHHHHHHH--.--EE- CS
   PF01876.11 35 ekalrlacenldvDiis 51
                  + l  +ce +d+++++
  MMETSP0890-20130614|36352_1 47 ADKLSRTCEMNDIHLLI 63
                 44455566666666665 PP

  == domain 2    score: 76.3 bits;  conditional E-value: 2.8e-25
                  --EEEEEES--HHHHHHHH-SS..SEEEEE-S-HHHHHHHHH--.--EE--TTTTSS-----HHHHHHHHHHT-BE-EESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE--- CS
   PF01876.11   2 srltivvsdpsskkqalsklrqkydivavrPlsekalrlacenldvDiisldlasrlpfglkhktaklavergvafEisyspliradgkarrnfisnarqlirlsrkrgliiSSgA 117
                   r ti+++++    +  + l++++d++a++P+se+a+++ac+++dvDii+++++++lpf l+++ + +a++r   fE+sy       ++++r+++s a++l  ++ ++g+i+S g 
  MMETSP0890-20130614|36352_1  76 ARATIILESS--RIELPRSLLKSFDLIAICPKSEAAFKQACTTNDVDIITIECSQQLPFALHRAPLLAARKRSACFELSYDMPQ---STSKRHLVSLAARLADACHGKGVILSGGN 186
                  6999***999..58899999************************************************************9777...9************************9773 PP

>> PF10244.4  Mitochondrial ribosomal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   2.6e-06     0.012      31      93 ..     211     273 ..     207     274 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-06
    PF10244.4  31 vhPkdliigPsWlrgvk.GnelqrlirkrklvgarlleedpkklhelekriryLykklnrkgke 93 
                  +h + l   P+W++ +  G + +     + + ++r  +e+ +++h+++kr r+Ly+ + + +k+
  MMETSP0890-20130614|36352_1 211 LHHAALRRRPTWIKPTDlGLDDIIFADDESIQKSRASAEK-SRRHQIKKRKRFLYETQHHATKR 273
                  5778888999999988724344444445555555666665.9**************99988875 PP

>> PF12415.3  Poxvirus DNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       0.4   1.8e+03      20      26 ..      79      85 ..      78      86 .. 0.83
   2 ?    9.4   0.0   9.6e-05      0.44       7      16 ..     151     160 ..     150     165 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.4
    PF12415.3 20 nalIEst 26
                 +++ Es+
  MMETSP0890-20130614|36352_1 79 TIILESS 85
                 89****8 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 9.6e-05
    PF12415.3   7 LsyDMPnEii 16 
                  LsyDMP++++
  MMETSP0890-20130614|36352_1 151 LSYDMPQSTS 160
                  9******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       575  (0.0420568); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.96
# Mc/sec: 696.44
//
Query:       MMETSP0890-20130614|36355_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-06   25.4   6.9    7.8e-06   25.4   4.8    3.6  2  PF05499.7 DNA methyltransferase 1-associated protein 1 (DMAP1)


Domain annotation for each model (and alignments):
>> PF05499.7  DNA methyltransferase 1-associated protein 1 (DMAP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   4.8   5.7e-10   7.8e-06      41     166 ..     332     471 ..     269     475 .. 0.71
   2 ?   -0.6   1.3     0.054   7.4e+02      34      75 ..     506     545 ..     501     563 .. 0.48

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 5.7e-10
    PF05499.7  41 fstaearkrekklrkkkvskkprpskeeekvevvetaGikfsdlksaGv...........slrsqklklPan....vGqkkvkaleqvleelkvdlnPvpteeivkvfnelrsdlvLlyeLkqalatcefelesLkhryea 166
                  +   +++ +e  + kk+++++prp+ + ++ + +  a  + +  ++  +           +l+s++l+lP +    +    +  l  vleel+v   P pt   + ++++lr d+v l  L++ +++ + el+ L+ ++++
  MMETSP0890-20130614|36355_1 332 QEKEDQQPTENVFAKKEIQQRPRPVGNRQVGATT-VATQQHTAQRGPDIiqhrrpvpgqpFLQSARLRLPESqpggLSHGMLTKLSLVLEELGVPNRPLPTKLACDAYDQLRRDIVTLLSLQKLANNKQIELNKLRAQLDD 471
                  33334445566678999*****999876654333.233334333333221111111222379*******965332256778999*****************************************************9986 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.054
    PF05499.7  34 dqqaeaafstaea.r.krekklrkkkvskkprpskeeekvevve 75 
                  +qq+++++st ++ + k+  k  k + s+k r+ ke++ +   +
  MMETSP0890-20130614|36355_1 506 NQQQRQTKSTVAHpGkKAGEKQVKPSTSQK-RKHKETTAP---A 545
                  444444444433312133334434455555.333333332...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       844  (0.061732); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.36s 00:00:01.27 Elapsed: 00:00:01.76
# Mc/sec: 793.79
//
Query:       MMETSP0890-20130614|36366_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.92
# Mc/sec: 145.87
//
Query:       MMETSP0890-20130614|36376_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-21   76.2   0.2    3.7e-20   72.2   0.1    3.1  1  PF00566.13 Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.1   2.7e-24   3.7e-20       2     192 ..      90     402 ..      89     413 .. 0.80

  Alignments for each domain:
  == domain 1    score: 72.2 bits;  conditional E-value: 2.7e-24
   PF00566.13   2 elRgevWklllgykp......................................kvkrlksseekqeeskkqksklekeedske..esqIkkDvpRtfp...............ed.elfkne..egqnqLeriLkayaiynpeigYcqGmnfiaallL................................................lvvldeee......................afwcfvsLlnkklrdlfkpslpglqrdlqileellkkhdpelykhlekeeldlslfaikWfltlfv.relpletvlrlwDlfle 192
                  elR++vW++ l++                                         + + +++ +k+e ++ + + +++ ++s+    ++I +DvpRtf                ++ e+ ++     + +L+r+L+ +a+  p ++Y+qGmnf+ ++lL                                                       +                      +  +f+ L+   +  l+ p++ gl++ +++   ll k+ p+l++ l +e+ldl+  +++W ltlf+ +++++e+++  wD+f+ 
  MMETSP0890-20130614|36376_1  90 ELRRKVWCTVLEAAVeheigdkttgsvsprngpkivqnedttqekeeesnsvsPRLFVQQNRKKDEPRWARPRRTDDGRISPRlvPREIALDVPRTFGsrdsaeerysmypclHKeEIIDSTriFEEIRLRRLLTHFARTSPGVQYFQGMNFLGGTLLrvfdtgenyffankktingemakekqiclthdeavhddisiqlniqnkN------QqkspiqntspyntertttidaaTASAFKGLM-ALVTPLYVPDFLGLRELVDVATSLLPKVAPKLSTVLAQEGLDLMPVLAPWCLTLFAsTAMDYECLILCWDFFIL 402
                  678888888887766778888888888888888888888888888888888884455555556666666666666666666655589***********9999998887777763354444441244678*****************************9999999999999999999988888888777777777777775543330......15567777777778888999999999999999.999*****************************************************999***********6663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:01.11
# Mc/sec: 1664.50
//
Query:       MMETSP0890-20130614|36387_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 365.16
//
Query:       MMETSP0890-20130614|36388_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.039   13.5   0.0       0.05   13.1   0.0    1.1  1  PF00060.21 Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> PF00060.21  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-06      0.05      77     136 ..      13      73 ..      10      75 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.6e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXX-----SHHHHHTHS.------XXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
   PF00060.21  77 wwffvlillssYtAnLaAfltvermqspiesledlakqt.kaeCstkksekssseLslenv 136
                  w+ff l+  ss  A++ A+lt + +   i + +  +++   a C+++++   ++eL+ ++v
  MMETSP0890-20130614|36388_1  13 WIFFHLVYASSLGASIFALLTARALYRVIVGNTREKNRFlVAGCTQHNRGGPKNELDPNEV 73 
                  ************************9998776555444443558999988888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      250  (0.0182855); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 290.76
//
Query:       MMETSP0890-20130614|36395_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   18.0   0.0      0.047   12.6   0.0    2.1  2  PF10250.4 GDP-fucose protein O-fucosyltransferase
     0.0074   15.8   0.2      0.044   13.2   0.1    2.0  2  PF03997.7 VPS28 protein


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0046        32      29      84 ..      36      94 ..      15     138 .. 0.70
   2 !   12.6   0.0   6.9e-06     0.047     228     291 ..     203     266 ..     187     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0046
    PF10250.4 29 a.tLVlPpwdelyhwkdsskqnrlpFsdfFdves....likylsrvveieeflpkeldsvk 84
                 +  L+lPp  +  h  d++  +   +sdf+d+++    l +++ ++v+  ++l+  l  v+
  MMETSP0890-20130614|36395_1 36 RgILLLPPSLTIKHNFDKQ-FRYNMWSDFIDLNRshltLSRTV-PDVSNRQKLQRTLCAVR 94
                 2589999999999888874.45667********9666666666.66766666655555554 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.9e-06
    PF10250.4 228 gekeidseelrregkcPltpeevklllkalgklkttsvyvAtdeiyggeeeleelkaelpnll..t 291
                  g+k  +++   +e+++ + p  ++++lk++g    + +yv tde    ++++++l++e++  l  +
  MMETSP0890-20130614|36395_1 203 GDKITNKKYCPKEMRMATSPDHIAKVLKRVGLTGGSAIYVMTDE--TDFNHFNSLITEYNYTLatN 266
                  34455555666899999999999*********************..66799999999999766533 PP

>> PF03997.7  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   6.4e-06     0.044     124     175 ..      62     113 ..      50     118 .. 0.91
   2 ?   -0.4   0.0     0.094   6.4e+02      47     100 ..     175     228 ..     165     234 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.4e-06
                  XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF03997.7 124 llseLleslnrlselpedfearsklkkWlvrlnklsisDelsdeqvRellfD 175
                  ++ +L  s  +ls+  +d+++r+kl++ l  +   +   e+s++q R+l +D
  MMETSP0890-20130614|36395_1  62 DFIDLNRSHLTLSRTVPDVSNRQKLQRTLCAVRMADCIAEISEHQLRHLQYD 113
                  66789999999****************************************9 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.094
                  TTT------------------HHHHHT--XXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF03997.7  47 kkeevssiedFakkyrldcpaaieRikegipitvedsiaassdkasvakviaei 100
                  +k+++s + ++ + + l+   ai  +++g  it ++        a++  +ia++
  MMETSP0890-20130614|36395_1 175 QKKAISPVLSWLHMHTLTGEIAIVHVRRGDKITNKKYCPKEMRMATSPDHIAKV 228
                  333588888888899999999***********9999776666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.37s 00:00:01.00 Elapsed: 00:00:01.00
# Mc/sec: 833.93
//
Query:       MMETSP0890-20130614|36399_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       148  (0.010825); expected 273.4 (0.02)
Passed bias filter:                      144  (0.0105325); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.34s 00:00:00.63 Elapsed: 00:00:01.30
# Mc/sec: 106.91
//
Query:       MMETSP0890-20130614|36409_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   24.1   0.1    3.7e-05   23.8   0.1    1.1  1  PF13472.1 GDSL-like Lipase/Acylhydrolase family
     0.0005   19.8   0.0    0.00063   19.4   0.0    1.1  1  PF13839.1 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   5.3e-09   3.7e-05      58     156 ..      17     140 ..       4     165 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 5.3e-09
    PF13472.1  58 laadpdlvtltlGgNDlgf........gdrtdaslekyeanlaaildalreaa.pvllvgyppvlpadrepp...............aaglrdaldal.nealaeaAaaygvtyvdlaaafadh 156
                   +++ +lv++ +G N lg+        +d+ + +l+  +a+ a++l+a + +a + +++g +p   ++++                   ++++  d++ n++l+ aA+a  ++yvd +++fa  
  MMETSP0890-20130614|36409_1  17 APKPLTLVLVAGGSNGLGQhwhigkcsQDTEKCRLDYAKAANATLLQASKLNAtTLVVIGATPTHFPTQDGDfrgeitnekltdlsqGCRATQFPDHWrNNILKTAARAVSAHYVDSFPLFAPF 140
                  355669***************99988536677777777888888888877666677777766655544444457*************88888889999566677777777*********98853 PP

>> PF13839.1  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.1e-08   0.00063     108     238 ..      36     189 ..      18     193 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.1e-08
    PF13839.1 108 Wwlkrkikrl.relssgeayrkaletwakwvlvkldqkkistrvffrslspvheklsewnsggkck.........ssraegitneliealnevlkarktksdvklldiltllsqlrkddgHpsvyrkkkekk.........................eDclHWclp 238
                  +w   k   + +e  + + ++ a+ t+++  +++       t++++ + +p+h++ ++ ++ g+++         + ra+++   +++++ +      + + ++++d++ l++ +   d+H  + +k  ++                           DclH+c++
  MMETSP0890-20130614|36409_1  36 HWHIGKCS-QdTEKCRLDYAKAANATLLQASKLNA------TTLVVIGATPTHFPTQDGDFRGEITnekltdlsqGCRATQFPDHWRNNILKTAA---RAVSAHYVDSFPLFAPFA--DAHLDRIVKYSNPFdalgpieddvpanfyphmrrefpgnIDCLHFCMH 189
                  44323444.33777777777777777777766444......55666679********99999999999998887755555544444444443333...57899*****88777777..6999988877777679******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.34s 00:00:00.82 Elapsed: 00:00:00.88
# Mc/sec: 531.01
//
Query:       MMETSP0890-20130614|36411_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-17   61.2  82.4    5.3e-17   61.1  57.1    1.0  1  PF13868.1 Tumour suppressor, Mitostatin
  ------ inclusion threshold ------
       0.74    8.2   7.3        0.9    7.9   5.1    1.1  1  PF03495.9 Clostridial binary toxin B/anthrax toxin PA
        1.3    7.8  11.2        1.8    7.4   7.8    1.2  1  PF09412.5 Endoribonuclease XendoU


Domain annotation for each model (and alignments):
>> PF13868.1  Tumour suppressor, Mitostatin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1  57.1   1.2e-20   5.3e-17     154     341 ..       4     191 ..       1     192 [] 0.98

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 1.2e-20
    PF13868.1 154 kileyqrekaereeereeerkerkeekerivarLraqqeeaedekeeldeLrakllqeeyerkeRqkekeeaekkrrlkqelkrareeqleekeerlqeereeeeeerermlekqaeeeeleqenaekrrkkreehrreleqqieekeekreeereeeleegeklkeeeaerqarieeeRqrlLkela 341
                   i++ ++  a+re+ r + ++e+k+++++ + r+ a  e+++   ee+ +Lr +l++ee e+++ +++ ++++++ +lk+++++a+++ql++k+er+ +e++ e++  e m +k+a +  +eqe+++kr +++e++ +++++q  ++++++ee++++el e  + +++e++rq+++ e+R+rl++++a
  MMETSP0890-20130614|36411_1   4 EIMKHAQALAKREADRIAAEEEKKRRQAENFRRIVAATERQRASDEEMQNLRDMLWEEEMEAARMKQDAQREARRLELKRQMAEANQRQLAAKKERELAEKAAEQDLVEAMQRKFALDQAKEQEEEAKRLAQKEQYLDAIQKQKIQRQKLYEEAKNAELDEAGHDQAAEEYRQRVVAEARRRLIEQHA 191
                  689999999*******************************************************999999999*****************************************************************************************************************98 PP

>> PF03495.9  Clostridial binary toxin B/anthrax toxin PA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.1    0.0002       0.9     290     384 ..      68     159 ..      35     164 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0002
    PF03495.9 290 ileeikektAsiildeenqkllerrvaakdesnpedktPeltlkealklafeieekdglltyndkeisessievilDeetskeikkqLkdlkakn 384
                  + ++ + ++ ++ l+ +  ++ +r++aak+e +  +k  e  l ea++  f++++  ++   + k + ++  e +lD   +++i++q  + +akn
  MMETSP0890-20130614|36411_1  68 MKQDAQREARRLELKRQMAEANQRQLAAKKERELAEKAAEQDLVEAMQRKFALDQAKEQE-EEAKRLAQK--EQYLDAIQKQKIQRQKLYEEAKN 159
                  4456667777899**************************************888855543.356888888..8999*999999999966666665 PP

>> PF09412.5  Endoribonuclease XendoU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.8    0.0004       1.8       2     111 ..      46     154 ..      45     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0004
    PF09412.5   2 asdaelstlaqelwelDenrltpgadyklnlqkkasssekedeaskpLfskvdeeklkskptyaafi.aLldnYeldtgeaeevteeekqeqeafldeilkTkvmkeahey 111
                  asd+e+++l + lwe++ + ++ ++d + ++ +   + +  ++ +++L +k ++e  + k   + ++ a+   ++ld+++++e  +++ +++e++ld+i+k k+ +    y
  MMETSP0890-20130614|36411_1  46 ASDEEMQNLRDMLWEEEMEAARMKQDAQREARRLELKRQMAEANQRQLAAKKERELAE-KAAEQDLVeAMQRKFALDQAKEQEEEAKRLAQKEQYLDAIQKQKIQR-QKLY 154
                  5799*************99998888877777776666666777777777766666665.55555555055568***************************988766.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2690  (0.196752); expected 273.4 (0.02)
Passed bias filter:                      551  (0.0403013); expected 273.4 (0.02)
Passed Vit filter:                       103  (0.00753365); expected 13.7 (0.001)
Passed Fwd filter:                        40  (0.00292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.43s 00:00:01.54 Elapsed: 00:00:01.56
# Mc/sec: 294.94
//
Query:       MMETSP0890-20130614|36417_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   13.5   0.0      0.052   13.1   0.0    1.2  1  PF12149.3 Herpes simplex virus virion protein 16 C terminal


Domain annotation for each model (and alignments):
>> PF12149.3  Herpes simplex virus virion protein 16 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-06     0.052       6      23 ..      43      60 ..      38      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.8e-06
    PF12149.3  6 aaLDvADFEFEQMFTDAL 23
                 aaLDv  FE  Q   DAL
  MMETSP0890-20130614|36417_1 43 AALDVGEFELGQICYDAL 60
                 9****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.38s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 316.94
//
Query:       MMETSP0890-20130614|36416_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-19   67.9  10.4    9.7e-05   22.0   0.1    4.3  4  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.013   15.6   0.5        1.6    9.0   0.1    2.7  2  PF13570.1  YWTD domain
      0.035   12.0   0.0      0.038   11.9   0.0    1.2  1  PF11635.3  Mediator complex subunit 16


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.1e-08   9.7e-05      20      39 .]      59      78 ..      54      78 .. 0.93
   2 !   16.2   0.0   1.4e-06    0.0062      23      39 .]     103     119 ..      83     119 .. 0.73
   3 !   14.1   0.1   6.4e-06     0.029       2      39 .]     124     159 ..     123     159 .. 0.84
   4 !   20.2   0.3   7.4e-08   0.00034       1      35 [.     163     195 ..     163     196 .. 0.97

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.1e-08
                 ESSSTEEEEEETTSEEEEEE CS
   PF00400.27 20 spdgpllasgSrDgtirlWd 39
                 sp g  +asgS+Dg+i++W+
  MMETSP0890-20130614|36416_1 59 SPGGLKFASGSDDGSIKIWS 78
                 68899**************7 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.4e-06
                  STEEEEEETTSEEEEEE CS
   PF00400.27  23 gpllasgSrDgtirlWd 39 
                  + +la gS+Dg++r++d
  MMETSP0890-20130614|36416_1 103 SGYLAAGSDDGSVRIFD 119
                  78*************98 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 6.4e-06
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++++tl+   + ++++ +  +  +l+sgS D++i ++d
  MMETSP0890-20130614|36416_1 124 TLVKTLDVQADEIWALTVVGE--HLVSGSVDRSIQVFD 159
                  667777777788888888888..*************98 PP

  == domain 4    score: 20.2 bits;  conditional E-value: 7.4e-08
                  TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEE CS
   PF00400.27   1 geckatlrgHtspVtcvafspdgpllasgSrDgti 35 
                  + c+at+r+H +pV+++   ++  +l+sgS+D ti
  MMETSP0890-20130614|36416_1 163 WSCVATCRHHYGPVYALTSLQN--HLISGSSDETI 195
                  78********************..********998 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00035       1.6       8      40 .]      87     122 ..      75     122 .. 0.72
   2 ?    4.3   0.0    0.0099        45      12      40 .]     135     162 ..     123     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00035
    PF13570.1   8 dtpgpvnssp.avd..gglvyvgtgdGrlyAlDaet 40 
                  ++++++n ++ +++   g++ +g+ dG+++ +D++t
  MMETSP0890-20130614|36416_1  87 TLHSDANVGVlVLAslSGYLAAGSDDGSVRIFDTRT 122
                  677877767753333379***************998 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0099
    PF13570.1  12 pvnsspavdgglvyvgtgdGrlyAlDaet 40 
                  +++  ++v+g +++ g+ d ++ ++D+++
  MMETSP0890-20130614|36416_1 135 EIW-ALTVVGEHLVSGSVDRSIQVFDTRD 162
                  455.4799******************986 PP

>> PF11635.3  Mediator complex subunit 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.4e-06     0.038     242     301 ..      74     131 ..       4     170 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.4e-06
    PF11635.3 242 ssqktklklrkleklleskkvesIalekldivvafaysDgsiqildrntmkvinetkned 301
                   +  +++ lr + +l+++  v    l+ l  ++a   +Dgs+ i+d++t+++++    + 
  MMETSP0890-20130614|36416_1  74 IKIWSASDLRCQLTLHSDANVGVLVLASLSGYLAAGSDDGSVRIFDTRTWTLVKTL--DV 131
                  34667889999****************************************99887..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.57
# Mc/sec: 896.57
//
Query:       MMETSP0890-20130614|36414_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-53  179.4   0.1    7.1e-53  178.7   0.0    1.3  1  PF00009.22 Elongation factor Tu GTP binding domain
    2.4e-45  152.7   1.6    4.3e-45  151.9   1.1    1.4  1  PF06421.7  GTP-binding protein LepA C-terminus
    2.2e-22   78.5   0.1    5.6e-22   77.3   0.1    1.7  1  PF00679.19 Elongation factor G C-terminus
      2e-06   27.6   0.1    1.2e-05   25.1   0.0    2.2  2  PF01926.18 50S ribosome-binding GTPase
    2.5e-05   24.1   0.2    7.9e-05   22.5   0.2    1.9  1  PF03144.20 Elongation factor Tu domain 2
    6.1e-05   22.3   0.0    0.00021   20.6   0.0    1.9  3  PF00071.17 Ras family
     0.0031   17.8   0.0       0.36   11.2   0.0    2.7  2  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.033   13.2   0.0        0.1   11.6   0.0    2.0  1  PF09439.5  Signal recognition particle receptor beta subunit
       0.13   12.2   0.4        3.8    7.5   0.1    2.7  3  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   4.6e-56   7.1e-53       2     188 .]      59     238 ..      58     238 .. 0.94

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 4.6e-56
                  GEEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEE...T.ESCEEEEEEE----GGGHHHHHHHHHT-SEEEEEEETTS-S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHHHSCH CS
   PF00009.22   2 kirnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisle...ketkkrlinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaivellps 188
                  ++rn++ii+h+DhGK+Tl d++l ++g+++kr+++a   +lld+++ erergiTik++a+ ++   k+++++ +nliDtPGHvdFs ev+r+l++++ga+lvvda++Gv++qT   + la + +++ii v+NKiD+++ae+e++ ee++ ++    + +       v +Sa++g gi ++leaiv+ +ps
  MMETSP0890-20130614|36414_1  59 RVRNFAIIAHIDHGKSTLADRMLEVTGTVAKREMQA---QLLDSMDLERERGITIKLNAARMNyqaKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVQAQTLANVYLAIENDLEIIPVLNKIDLPQAEPERVAEEIEATI----GLD---CSDAVLCSAKSGLGIHDVLEAIVQRIPS 238
                  78*****************************88755...58**********************75559*********************************************************************************666....333...3468********************9996 PP

>> PF06421.7  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   1.1   2.9e-48   4.3e-45       1     107 [.     592     698 ..     592     699 .. 0.98

  Alignments for each domain:
  == domain 1    score: 151.9 bits;  conditional E-value: 2.9e-48
                  ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEE----EEEEEEE--------------------------------------------------- CS
    PF06421.7   1 ingekvdalslivhkekaeergrklveklkeliprqqfevaiqaaigskiiaretikalrkdvlakcyggdisrkkkllekQkegkkrmkkvgnveipqeaflavLk 107
                  inge    ls++vh+++a+  g++lv+klk++iprq+f+++iqa+i++ iia+ +i+alrkdvlakcyggdisrkkkll+kQ++gkkrmk++g+v++pqeaf++vL+
  MMETSP0890-20130614|36414_1 592 INGEIATPLSTVVHEDDAYAAGKTLVRKLKTHIPRQLFKIPIQACINNAIIASVQISALRKDVLAKCYGGDISRKKKLLQKQAKGKKRMKQMGKVNVPQEAFMSVLN 698
                  78888899*************************************************************************************************97 PP

>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   3.7e-25   5.6e-22       1      87 [.     502     589 ..     502     591 .. 0.96

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 3.7e-25
   PF00679.19   1 vllEPimeveievpeeylgkvisdltkrrGeilsmenagenrvvieaevPlaeli.gysteLrslTsGrgsfslefsgYepvpgekle 87 
                  ++lEP++++ei++p++y+g++i+  ++rrGe+++m++ + +r+++ +++Plae+i +++++++s T+G +s+++++ gY++ + ++++
  MMETSP0890-20130614|36414_1 502 HVLEPYVKMEIITPSDYTGSIIELAQERRGELKDMKYLTPTRTTVVYDMPLAEVItDFFDQVKSRTRGFASMEYSLIGYRESNLVRMD 589
                  68********************98889******************************************************9987765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   8.1e-09   1.2e-05       3     114 .]      64     188 ..      62     188 .. 0.68
   2 ?   -0.7   0.0      0.83   1.3e+03      74      98 ..     476     503 ..     443     549 .. 0.63

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 8.1e-09
                  EEE--TT---HHHHHHHHC..STCTE............ETS-TT-SSSESEEEEETTE.......EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS.HHHHHHHHHHHHHHTCCCEEEEEEC CS
   PF01926.18   3 aivGrpNvGKStLinaLtg..ekaak............vsdypgtTrditenevkkek.......iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa.vlkeadkellneleakkplilvlnk 114
                  ai+ +   GKStL  ++++   ++ak             +   g T + +  +++++        ++l+DtPG +         ++ +++ +++  ++++llvvda + v+ ++  +++  +e++ ++i vlnk
  MMETSP0890-20130614|36414_1  64 AIIAHIDHGKSTLADRMLEvtGTVAKremqaqlldsmdLERERGITIKLNAARMNYQAkdgetyiLNLIDTPGHV---------DFSYEVSRSLAACEGALLVVDAAQgVQAQTLANVYLAIENDLEIIPVLNK 188
                  66677789*********95332244423333344444466666777777554443332345576336******54.........5788999**************66657777777776666799999999998 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.83
                  HH.CTSSEEEEEEETTS..HHHHHHHHH CS
   PF01926.18  74 kv.eradvlllvvdasa..vlkeadkel 98 
                  +  ++++++ll+vd+ +  + ke ++++
  MMETSP0890-20130614|36414_1 476 HTmKNTKAMLLIVDNPSrmPDKERNQHV 503
                  3335556666666622223333333333 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   5.2e-08   7.9e-05       1      74 []     263     334 ..     263     334 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.2e-08
                  EEEEEEEEEE--EETTEEEEEETTTCTEEEEEEEEEEEEETTCEE.SEEECEE--EEEESSSGGGGGTT---EEE CS
   PF03144.20   1 GtvatgrvysGtlkkGdtvrilgndtskkeivtrvrsletfngdl.deavaganaGvivaikgledaiikGdtlt 74 
                  G+v++ r+++G + kGd++ +l   +sk   v++ + +   + +  +++ +g+++++ + ik++eda ++Gdt+t
  MMETSP0890-20130614|36414_1 263 GVVVFFRLVQGAIGKGDKIKFLA--SSKIYDVVECGVMTPQRIPInRQLGPGEVGYLCASIKQVEDA-RVGDTIT 334
                  89*******************55..444445777777777777541566*****************8.*****96 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.4e-07   0.00021      29     160 ..     107     236 ..      85     238 .. 0.78
   2 ?   -4.1   0.0       5.2   7.9e+03      56      78 ..     464     487 ..     463     489 .. 0.75
   3 ?   -3.5   0.0       3.6   5.4e+03      58      84 ..     527     553 ..     525     581 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.4e-07
                  TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGHHHHHHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGGG-SS-HHHHHHHHHHTT...EEE---BTTTTTTHHHHHHHHHHHH CS
   PF00071.17  29 esTigvdfytkeievd.gkevkleiwDTAGqeefkslrslyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelg...lkfletSAktnenveeafeellrei 160
                    Ti  +  + + +++ g+++ l++ DT G  +f+   s ++  +eg+llv d  +    +++++ +  i++    +++i+ v nK+Dl + +  +   +ee+   +g      + +SAk+  ++++++e+++++i
  MMETSP0890-20130614|36414_1 107 GITIKLNAARMNYQAKdGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVQAQTLANVYLAIEN----DLEIIPVLNKIDLPQAEPERV--AEEIEATIGldcSDAVLCSAKSGLGIHDVLEAIVQRI 236
                  55776666666655545999*******************************999988887777777776665....56689999******9554443..34444444411345678****************9987 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 5.2
                  ---GGG.HHHHHHHHHT-SEEEEE CS
   PF00071.17  56 AGqeef.kslrslyyrdaegillv 78 
                  AGq+   ++l++  +++++++ll+
  MMETSP0890-20130614|36414_1 464 AGQDSDdEELEPHTMKNTKAMLLI 487
                  777754157999999999999987 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 3.6
                  -GGGHHHHHHHHHT-SEEEEE--TT-H CS
   PF00071.17  58 qeefkslrslyyrdaegillvyditsr 84 
                  qe+  +l+++ y + +   +vyd+  +
  MMETSP0890-20130614|36414_1 527 QERRGELKDMKYLTPTRTTVVYDMPLA 553
                  777778888888888888888886543 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00024      0.36       9     100 ..      70     175 ..      62     190 .. 0.64
   2 ?    3.7   0.0     0.048        73      54      84 ..     460     491 ..     432     496 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00024
    PF08477.8   9 gvGKssllsqlvgeefp....................kkklpeeikgdtlavktlevdvdtellelwdlggreelkkehelllkkadaillvydltdeesleevsellawla 100
                  + GKs+l  ++++ +                       ++++++    +    +   d++t +l+l d+ g+ +++ e    l ++ ++llv+d +++   +++ ++   la
  MMETSP0890-20130614|36414_1  70 DHGKSTLADRMLEVTGTvakremqaqlldsmdlererGITIKLNAARMN----YQAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVQAQTLANVY--LA 175
                  6688888888887777766777777776544332211112222222222....3344555555***************9999**************999888887773..33 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.048
    PF08477.8  54 lwdlggreelkkehell.lkkadaillvydlt 84 
                    +++g++  ++e e++ +k+++a+ll++d+ 
  MMETSP0890-20130614|36414_1 460 DSEIAGQDSDDEELEPHtMKNTKAMLLIVDNP 491
                  346778888888888888***********975 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.8e-05       0.1      37      98 ..     115     172 ..      59     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.8e-05
                  -EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEETTS-TT--HHHHHH CS
    PF09439.5  37 ssaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEl 98 
                  + + ++ k+ +   l+liD PGh+ + ++++ +    +   g + vvD++    ++++ A  
  MMETSP0890-20130614|36414_1 115 ARMNYQAKDGETYILNLIDTPGHVDFSYEVSRS---LAACEGALLVVDAAQ-GVQAQTLANV 172
                  3344445556666789*************9998...667788889999763.3344444444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0025       3.8      11     119 ..      67     182 ..      61     194 .. 0.73
   2 ?    1.7   0.0      0.15   2.3e+02      36      80 ..     204     254 ..     192     267 .. 0.75
   3 ?   -3.0   0.0       4.4   6.6e+03      83      96 ..     478     491 ..     419     503 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0025
    PF13401.1  11 GesGvGKTtllrrlarqldeeaeaae...........karvvfveapast...spkellqkllsalglpakgrltteellealqealrrrrtrlliiDEaqrLseealeelrsllddetgvkl 119
                  +    GK+tl+ r+++    +a+ +            + r +++ ++a      +k+  + +l+ ++ p +      +    + + l++++  ll++D aq +++++l ++ +l+  e+++ +
  MMETSP0890-20130614|36414_1  67 AHIDHGKSTLADRMLEVTGTVAKREMqaqlldsmdleRERGITIKLNAARmnyQAKDGETYILNLIDTPGHV-----DFSYEVSRSLAACEGALLVVDAAQGVQAQTLANV-YLAI-ENDLEI 182
                  555679999999999999888888887777877777755555555555555466666667777777766666.....888999999999999***********99999998.4444.455544 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.15
    PF13401.1  36 e......karvvfveapastspkellqkllsalglpakgrltteell.ealq 80 
                  e      ++++v++ a+++   +++l+++++ + +p +  +t++e++ + + 
  MMETSP0890-20130614|36414_1 204 EatigldCSDAVLCSAKSGLGIHDVLEAIVQRIPSPQNT-KTQQEVTkALIF 254
                  1344678889999999999999************99999.999999955555 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 4.4
    PF13401.1  83 lrrrrtrlliiDEa 96 
                  +++++  lli+D+ 
  MMETSP0890-20130614|36414_1 478 MKNTKAMLLIVDNP 491
                  33333368888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.03u 0.40s 00:00:01.43 Elapsed: 00:00:00.97
# Mc/sec: 1744.15
//
Query:       MMETSP0890-20130614|36428_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-19   69.5   0.0    2.2e-19   68.8   0.0    1.4  1  PF07683.9 Cobalamin synthesis protein cobW C-terminal domain


Domain annotation for each model (and alignments):
>> PF07683.9  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.6e-23   2.2e-19       1      94 []       6     123 ..       6     123 .. 0.95

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 1.6e-23
    PF07683.9   1 issfvfrarrpfdperleallee..lpegvlRaKGivwla...gkpdalvlqgvggrlrlepagawwaal...................edgdrrseLVfIGrdldkealeeaLdacl 94 
                  +ss+vfr+r p++p+rl++ l+   + + vlRaKGi +la   g+++ + l+ +g+  +l p + wwa++                    +gdr++eLV+IGr++d  ++ +aL+acl
  MMETSP0890-20130614|36428_1   6 VSSLVFRHRTPLHPTRLRDQLDVwaQDPIVLRAKGIAYLAtprGWDHQCILSLAGRAATLLPGPLWWASIdrsewpagleqaieplwidGQGDRQNELVIIGRGMDDVQIIKALEACL 123
                  68*********************555566***********9988888******************************************9***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.37s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 561.34
//
Query:       MMETSP0890-20130614|36430_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      227  (0.0166033); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.42s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 214.41
//
Query:       MMETSP0890-20130614|36425_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-10   39.2   9.4    6.8e-10   38.4   5.0    2.2  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    7.1e-10   38.7   0.4    5.5e-09   35.8   0.0    2.4  2  PF00498.21 FHA domain
    3.3e-09   36.2   9.4    3.3e-09   36.2   6.5    2.2  3  PF13639.1  Ring finger domain
    5.1e-09   35.5   6.0    5.1e-09   35.5   4.1    2.0  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    4.6e-06   26.0   7.9    4.6e-06   26.0   5.5    2.0  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0028   17.0   3.1     0.0069   15.7   2.2    1.7  1  PF14447.1  Prokaryotic RING finger family 4
  ------ inclusion threshold ------
       0.15   11.5   3.2        0.4   10.1   1.8    2.1  2  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
       0.73    9.9   9.2       0.41   10.6   3.8    2.4  2  PF12678.2  RING-H2 zinc finger


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.37   6.3e+02       4      12 ..      57      65 ..      54      74 .. 0.79
   2 !   38.4   5.0     4e-13   6.8e-10       2      45 ..     194     235 ..     193     236 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.37
    PF13923.1  4 sCpiCleel 12
                  C iC +e+
  MMETSP0890-20130614|36425_1 57 GCDICWSEA 65
                 699998876 PP

  == domain 2    score: 38.4 bits;  conditional E-value: 4e-13
    PF13923.1   2 rfsCpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  +++C+iC++ +  ++i +pCgHl C  C+ +wl++  + CP Cr
  MMETSP0890-20130614|36425_1 194 DLECVICQDLMAYCHI-LPCGHLGCGACLLEWLRR-GNGCPECR 235
                  789***********87.******************.*******9 PP

>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.2e-12   5.5e-09       1      67 [.      50     116 ..      50     117 .. 0.97
   2 ?    0.0   0.0      0.49   8.3e+02      34      62 ..     126     159 ..     119     161 .. 0.69

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 3.2e-12
                  EEE-E-TTSSS---TTTS-TTCEEEEEEETCEEEEEEECST--EEETTEECSTTSEEEE-TTEEEEE CS
   PF00498.21   1 vtiGRssdcdivlddpsiSrkHalikydeggkfyleDlgSknGtfvNgqrigkgepvrLksgdviel 67 
                  v+iGR++ cdi  +++ iSr Ha++  ++g+ f ++  +    + vNgq + k+ + +L+ gd+i++
  MMETSP0890-20130614|36425_1  50 VSIGRNDGCDICWSEAYISRWHATLIGEQGRLFVIRQTKEDKLIRVNGQEVLKDMRRELQLGDQIDF 116
                  68****************************999999999**************************99 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.49
                  EEEEECST--EEETTEECST......TSEEEE-TT CS
   PF00498.21  34 yleDlgSknGtfvNgqrigk......gepvrLksg 62 
                  y+   gS+  +f+   r++k      ++p+ L ++
  MMETSP0890-20130614|36425_1 126 YIVR-GSTRSVFITSSRVRKksigrrSDPIILDDD 159
                  4555.789999999999988666666666666665 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.7   2.9e+03       3       9 ..      58      64 ..      56      69 .. 0.82
   2 !   36.2   6.5   1.9e-12   3.3e-09       2      45 ..     196     236 ..     195     237 .. 0.96
   3 ?   -3.0   0.4       3.3   5.6e+03      25      30 ..     269     274 ..     268     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.7
    PF13639.1  3 CaiClde 9 
                 C iC +e
  MMETSP0890-20130614|36425_1 58 CDICWSE 64
                 99**987 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.9e-12
    PF13639.1   2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssnsCPlCrk 45 
                  eC+iC+d +     ++ lpCgH+ +  Cl ewlr+ n CP Cr+
  MMETSP0890-20130614|36425_1 196 ECVICQDLM---AYCHILPCGHLGCGACLLEWLRRGNGCPECRE 236
                  8********...79*****************************7 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 3.3
    PF13639.1  25 fHeeCl 30 
                  fHe+C+
  MMETSP0890-20130614|36425_1 269 FHERCC 274
                  999997 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.59     1e+03       3      11 ..      56      64 ..      54      69 .. 0.78
   2 !   35.5   4.1     3e-12   5.1e-09       2      48 ..     194     239 ..     193     241 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.59
    PF13920.1  3 ktCvvCler 11
                 + C +C+++
  MMETSP0890-20130614|36425_1 56 DGCDICWSE 64
                 569999986 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 3e-12
    PF13920.1   2 kktCvvClereadvlllpCgHlclCeeCaerllkrkkkCpiCrspie 48 
                  + +Cv+C++  a + +lpCgHl  C +C  ++l+r + Cp Cr++++
  MMETSP0890-20130614|36425_1 194 DLECVICQDLMAYCHILPCGHL-GCGACLLEWLRRGNGCPECRENVK 239
                  679*******************.*********************997 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.3   2.2e+03       1       8 [.      58      65 ..      58      69 .. 0.81
   2 !   26.0   5.5   2.7e-09   4.6e-06       1      41 []     197     234 ..     197     234 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.3
                 -TTTSSS- CS
   PF00097.20  1 CpiCleea 8 
                 C iC +ea
  MMETSP0890-20130614|36425_1 58 CDICWSEA 65
                 99998876 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.7e-09
                  -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                  C iC++ ++  + +l+C+H  C +C++++l+  + + CP+C
  MMETSP0890-20130614|36425_1 197 CVICQDLMAYCH-ILPCGHLGCGACLLEWLR--RGNGCPEC 234
                  9*********99.******************..7788**** PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.2     4e-06    0.0069       5      52 ..     192     241 ..     188     244 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4e-06
    PF14447.1   5 qpeqpcllcgtvgtkrvllpCgHlvpdetFd..lerYsgCPfCgtrletd 52 
                   ++ +c+ c+   +   +lpCgHl + ++    l r +gCP C + + ++
  MMETSP0890-20130614|36425_1 192 MEDLECVICQDLMAYCHILPCGHLGCGACLLewLRRGNGCPECRENVKSG 241
                  56779************************843388********9998876 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.8   0.00024       0.4       9      49 ..     193     228 ..     187     241 .. 0.83
   2 ?   -3.4   0.0       4.1     7e+03      37      48 ..     387     398 ..     387     402 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00024
                  XX-B-TTT-S.-SS....EEEES---EEEHHHHHHHHHHHHT CS
    PF13445.1   9 sifaCpiske.qsteqnpPvvLpCGhvisrealeklakggrs 49 
                  +++ C i+++ +        +LpCGh  +  +l ++++   +
  MMETSP0890-20130614|36425_1 193 EDLECVICQDlMAY----CHILPCGHLGCGACLLEWLRR--G 228
                  5688******9944....779***************993..2 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.1
                  HHHHHHHHHHHH CS
    PF13445.1  37 realeklakggr 48 
                  r+a+++l+++++
  MMETSP0890-20130614|36425_1 387 RNAINNLVNDNN 398
                  789999999442 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5   4.3e+03      19      27 ..      55      63 ..      40      72 .. 0.61
   2 ?   10.6   3.8   0.00024      0.41      16      75 .]     190     235 ..     175     235 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.5
    PF12678.2 19 ednCaiCrn 27
                 +d C iC +
  MMETSP0890-20130614|36425_1 55 NDGCDICWS 63
                 344666644 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00024
    PF12678.2  16 disedn.CaiCrneleelcpeckapgksdecpvawgeCgHaFHlhCiskWlktrktCPlcr 75 
                  +i ed  C+iC+  +               c ++   CgH     C+ +Wl++ + CP cr
  MMETSP0890-20130614|36425_1 190 SIMEDLeCVICQDLM-------------AYCHILP--CGHLGCGACLLEWLRRGNGCPECR 235
                  344554477777777.............5688875..***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       513  (0.0375219); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.44s 00:00:01.11 Elapsed: 00:00:01.60
# Mc/sec: 609.57
//
Query:       MMETSP0890-20130614|36424_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-57  192.2   0.0    1.5e-56  191.6   0.0    1.2  1  PF00491.16 Arginase family


Domain annotation for each model (and alignments):
>> PF00491.16  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   1.1e-60   1.5e-56      45     274 ..       6     274 ..       2     275 .. 0.88

  Alignments for each domain:
  == domain 1    score: 191.6 bits;  conditional E-value: 1.1e-60
                  GSEEEE---B---........SBHHH.H...HHHHHHHHHHHHHCCCEEEE----GGGHHHHHHHHCTC.STTEEEEEESSS----STCCTTBSSSTTSHHHH............HHHCTTE.GCCEEEE---BTSHHHHHHH...HCTCSEEE-HHHHHH.H-HHHHHHHHHHHCC...........T.S.....EEEEEEEGGGS-TTTSTT--S-------HHHHHHHHHHHHHCCEB---EEE---GGGSST-..CHHHHHHHHHHHHHHH CS
   PF00491.16  45 elkivdlgdvavd........vdneq.v...leeleeavaailkagkfpivlGGDHsialgslralaeaygkplgvihfDAHaDlrtpetegsgnshgtpfrr............aaeeglldpkklvqvGlrdvdneeyela...kelgirvitmrdidekgiaavleeilealee...........ekd.....pvylsfDiDvldpavapgtgtpepgGltlrellallrelasklnvvglDvvEvnPaldeeg..eqtarlaarlvrelll 274
                  ++++ dlg+++++        +++ + +    + l+e++ ++ k+gk +++lGGDHs+algsl+a  +a  ++ +v+++DAHaD++tpe+++sgn hg+p+++            +   + l+pk+l++vGlrd+d++e++++   k +g  v tmr++de gi  v++++l+ l+              +     p++ls+DiD++dp+ ap+tgt ++gGlt+re++ + +++a+++ + ++D+vEvn +l + +  ++t++la++lv+++ l
  MMETSP0890-20130614|36424_1   6 HWRVEDLGNLELNasatgndkMRHGEaIclgSRLLYEQALNAHKEGKCVVTLGGDHSVALGSLSASLAA-RPETRVLWCDAHADINTPESSPSGNAHGMPLSFflglasdsrldfI---PRLQPKRLAYVGLRDLDPAERRILralKAQGTYVATMREVDEFGIGIVMRQALTSLGYysstadadkisS-QslslpPLHLSYDIDAVDPQHAPATGTVVRGGLTFREAHFVAEACAETGAMSAMDIVEVNSDLTSPEaaQETVELAVSLVASA-L 274
                  499*******9887777766543333248999***********************************99.568**********************************999976632...67999**************99888666888888***********************44556676666651.156778**************************************9999*************9998668899*********994.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.34s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 1061.24
//
Query:       MMETSP0890-20130614|36432_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-17   60.7   0.9    2.3e-14   53.0   0.0    2.2  2  PF04934.9 MED6 mediator sub complex component
  ------ inclusion threshold ------
      0.084   12.3   1.2       0.12   11.8   0.8    1.4  1  PF04528.8 Adenovirus early E4 34 kDa protein conserved region


Domain annotation for each model (and alignments):
>> PF04934.9  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2   0.00054       3.7      20      32 ..       2      14 ..       1      20 [. 0.83
   2 !   53.0   0.0   3.3e-18   2.3e-14      67     139 ..      17      92 ..      14      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00054
    PF04934.9 20 LdYFaespFydkt 32
                 L+YF++spF+++ 
  MMETSP0890-20130614|36432_1  2 LEYFSRSPFWSQD 14
                 89********875 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 3.3e-18
    PF04934.9  67 ieyvlahv.rep..dlfvirKqrrrsetevtpladYyiiggniYqaPtlysvlqsrllsavlslekaleelsslsk 139
                  +e+vla+v   p  + +virKqrrrs  + +++a++yi++g +Yq+P++ ++++ r++++++ l++ l+el++  +
  MMETSP0890-20130614|36432_1  17 VEFVLAKViAHPsaQTYVIRKQRRRSGRSLEVIAVFYIMQGIVYQCPSVHELVKCRIERCAFFLNRGLDELQQTCR 92 
                  8999999964456699******************************************************998776 PP

>> PF04528.8  Adenovirus early E4 34 kDa protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   1.7e-05      0.12      78     123 ..      56     105 ..      30     147 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
    PF04528.8  78 nlvvlvCksCaelseisvrcCarrtrellrralkllekrtvslkq....l 123
                  + +v  C s +el ++++++Ca  + + l+++++ ++ ++  +k+    l
  MMETSP0890-20130614|36432_1  56 QGIVYQCPSVHELVKCRIERCAFFLNRGLDELQQTCRMNENAKKEkeasL 105
                  66899*******************************99988666533332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.74
# Mc/sec: 482.51
//
Query:       MMETSP0890-20130614|36434_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      177  (0.0129462); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 274.42
//
Query:       MMETSP0890-20130614|36436_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       525  (0.0383996); expected 273.4 (0.02)
Passed bias filter:                      386  (0.0282329); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.62
# Mc/sec: 347.86
//
Query:       MMETSP0890-20130614|36437_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-20   71.7   0.0    6.9e-20   70.6   0.0    1.6  1  PF00679.19 Elongation factor G C-terminus
  ------ inclusion threshold ------
      0.017   15.0   0.6      0.067   13.1   0.4    2.0  1  PF03144.20 Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0     1e-23   6.9e-20       3      86 ..     245     329 ..     243     332 .. 0.95

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 1e-23
   PF00679.19   3 lEPimeveievpeeylgkvisdltkrrGeilsmena.genrvvieaevPlaeligysteLrslTsGrgsfslefsgYepvpgekl 86 
                  +EP+ +ve++vpee++++v+  l++r+Ge+++  +a +++++ i++ vP++++ig++t+L s+T+G ++++  f++Y+p  g++ 
  MMETSP0890-20130614|36437_1 245 HEPWDSVEVQVPEEHSSAVVDLLNRRKGEMQDFGKAdTGDYAYIRYLVPTRGTIGLRTNLLSATRGLAVIDSNFDSYRPFAGDVG 329
                  8**********************************96789***************************************999875 PP

>> PF03144.20  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   9.8e-06     0.067       5      73 ..      69     137 ..      65     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.8e-06
                  EEEEEE--EETTEEEEEET....TTCTEEEEEEEEEEEEETTCEESEEECEE--EEEESSSGGGGGTT---EE CS
   PF03144.20   5 tgrvysGtlkkGdtvrilg....ndtskkeivtrvrsletfngdldeavaganaGvivaikgledaiikGdtl 73 
                   grv sG lk +d    +      dt      ++v+ l++  +  ++ v+ + aG iv   g++d i  G tl
  MMETSP0890-20130614|36437_1  69 IGRVRSGSLKANDGGSYGAmagpDDTM---RPVTVKELFVYDNLGRKSVDSVGAGEIVMFAGVSD-IGIGETL 137
                  699999999999964443320035555...55*********************************.9*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       201  (0.0147016); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:00.59
# Mc/sec: 1815.55
//
Query:       MMETSP0890-20130614|36443_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-39  135.6   0.1    1.1e-38  132.5   0.1    1.9  2  PF07209.7 Protein of unknown function (DUF1415)


Domain annotation for each model (and alignments):
>> PF07209.7  Protein of unknown function (DUF1415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.1   8.3e-43   1.1e-38       5     153 ..      20     161 ..      16     178 .. 0.87
   2 ?    1.1   0.0     0.019   2.5e+02     150     172 ..     186     208 ..     174     210 .. 0.83

  Alignments for each domain:
  == domain 1    score: 132.5 bits;  conditional E-value: 8.3e-43
    PF07209.7   5 iaetrqWleevviglnlCPFAkkevekkqiryvvseaekeeelleelleelelleeeeeeeieTtllvlpelledFldyldlldladalleelglegvlQlasfHPdyqFegteaddaenytNRsPyPilHllReesleralaaypdpe 153
                  +a+t +W+++vvi+l +CP+A+k +++ + +++ +e++k   +l+  +  +++l  ++ ++  Tt+l l+    +F+d+ld+++++++ +e+ +l g++Qla+fHPdy+F+++ ++d  +ytNRsP+P+lH+lRe+++e +l++y+ ++
  MMETSP0890-20130614|36443_1  20 VASTLNWIKNVVIELQFCPWAAKALTSPRFHLQYVEHSK---ILQMTEIAMKTL--SSGKNESTTILALAP--MHFDDFLDIVAIVNDQIENYDLRGIIQLAHFHPDYRFADAPKNDPGHYTNRSPFPLLHFLREDDIESVLSSYESSH 161
                  67899***************************9999865...566666778888..333444566665554..47999*****************************************************************998765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.019
    PF07209.7 150 pdpeeIperNielleklgaeklk 172
                  + +++I  rN++++++lg+++l+
  MMETSP0890-20130614|36443_1 186 HATDAIWLRNLDTCRHLGSAALQ 208
                  56899*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 917.23
//
Query:       MMETSP0890-20130614|36442_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31   10.9   2.7       0.61    9.9   0.3    2.4  3  PF09372.5 PRANC domain


Domain annotation for each model (and alignments):
>> PF09372.5  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.11   1.5e+03      33      45 ..      35      47 ..      23      68 .. 0.64
   2 ?    9.9   0.3   4.5e-05      0.61      21      86 ..      87     156 ..      72     159 .. 0.73
   3 ?   -1.3   0.0      0.14   1.9e+03      40      65 ..     217     242 ..     203     247 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.11
    PF09372.5 33 kfpiYgklikkii 45
                 + ++Y++ ik+  
  MMETSP0890-20130614|36442_1 35 TRKMYKDAIKEQR 47
                 5589999998765 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 4.5e-05
    PF09372.5  21 rlvnnkkikklk..kfpiYgklikkiikkaierkeliekaikvinnllsk..sywnkLPvEikykIleyL 86 
                   l n+++  +l   + +iY+  ++k+i  a++++ +  ++ + + + l++   yw++   ++  kI + L
  MMETSP0890-20130614|36442_1  87 ALANTEREERLRvaQEQIYRAKLRKSIALAEQKRAQRIECQERLIKELEDesKYWMTTEEDVDNKITDTL 156
                  44444444444443889*************99888877777777777777799**998888888887766 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.14
    PF09372.5  40 likkiikkaierkeliekaikvinnl 65 
                  l+++   ++ e +el+++a+++ +++
  MMETSP0890-20130614|36442_1 217 LLRSQATTLDEFYELLKDANEISEQI 242
                  66666777788888998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1506  (0.110152); expected 273.4 (0.02)
Passed bias filter:                      527  (0.0385459); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.70
# Mc/sec: 914.04
//
Query:       MMETSP0890-20130614|36441_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.8   2.1    4.4e-09   36.4   1.5    1.7  1  PF12697.2  Alpha/beta hydrolase family
    5.1e-05   22.9   0.0    0.00045   19.8   0.0    2.3  2  PF12695.2  Alpha/beta hydrolase family
    0.00044   19.7   1.6     0.0026   17.2   1.1    2.0  1  PF00561.15 alpha/beta hydrolase fold
     0.0011   18.4   0.0       0.13   11.7   0.0    2.3  2  PF06821.8  Serine hydrolase


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   1.5   1.3e-12   4.4e-09      17     220 ..      78     382 ..      60     387 .. 0.64

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.3e-12
                  HHHHHTTTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.....--EEEE--------HHHHHH----...EEEEEEE------STT....................................................................................---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG....................................------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTTEEEEE--..-SSSS-... CS
    PF12697.2  17 laeaLaagyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalgl....rpvvlvGHSlGgavalaaaarrpd..lvrglvlidppgplpas....................................................................................alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa....................................lldadlrealarldvPvlviageaDrvvppeearrlaealpgarvvvlp..gagHllfle 220
                  +a a            + +G+ ++  +y   ++ ++  dl a++++++     +p+++v+HS ++ +  +++a+ ++   v + v i+  ++l +                                                                                        +++p+++    +    ++++ +++ ++  f +d l+  ++            +                                      + ++r +l +++vP l++++++D++v++++   + ea++++ ++++    +gH ++++
  MMETSP0890-20130614|36441_1  78 MALAC-----------RARGWRPVVLSYWRLDWYEW-KDLDAAIRTIHSnyplAPLFIVAHSASAHLLVQYLAAVGKntPVVSAVTISGCLDLARAydfvkhtknrtyrsvfargmrrcirrhyahdptlisseqrqrraarllkikcgadimydrhvaslnkarglpprppeldddameLMDTQDPAFMNSGRR----RRQRKCRSDLDNEFEKDALPTTLNT-----------NssstettasqskvtpqkrkgrfhrtqtvallestrpHYRKPARLLLDHVRVPLLIVHARDDPLVSHDDNLSWPEAVKNSCLITVRthRGGHVGWFT 382
                  44444...........44555554444444444444.56777777776666669******************9955556999999999999888889*******************9999888888888888888888877777777777777777777777776666655555555544333333344433333....3333333334444444444333322...........03333333333344455555555555555566656756666667899999****************7777777788888755444333599997765 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.3e-07   0.00045       2     128 ..      60     363 ..      59     378 .. 0.86
   2 ?   -3.5   0.0       2.1   7.2e+03      18      43 ..     403     428 ..     395     455 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.3e-07
    PF12695.2   2 vvlvhGaggd..ssayeplaealakrgfavvavdlpghgas..egaaaakrvlaadlldleriilvGhSlGGgvalelag........................................................................................................................................................................rddrvkglvllap...f...pdgedlakltlpvllihGtrDgvvppeeaeklakalp 128
                  v+l+ G gg+   + ++++a a  +rg++ v++ +        ++ +aa r++  ++  l ++++v hS+ +++ +++ +                                                                                                                                                                        r  r + + ll++   +   p++  l+++++p+l++h+ +D +v+++    + +a++
  MMETSP0890-20130614|36441_1  60 VLLMYGIGGTrdDHYMKSMALACRARGWRPVVLSYWRLDWYewKDLDAAIRTI-HSNYPLAPLFIVAHSASAHLLVQYLAavgkntpvvsavtisgcldlaraydfvkhtknrtyrsvfargmrrcirrhyahdptlisseqrqrraarllkikcgadimydrhvaslnkarglpprppeldddamelmdtqdpafmnsgrrrrqrkcrsdldnefekdalpttlntnssstettasqskvtpqkrkgRFHRTQTVALLEStrpHyrkPARLLLDHVRVPLLIVHARDDPLVSHDDNLSWPEAVK 363
                  67787888761155699****************99655554235555777777.6667899************99998888*********************************************************************************999999999999999999999999999999999999999999999999999999999999999999999999999999999998853378888888888655357777778889999*************9887666555555 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.1
    PF12695.2  18 laealakrgfavvavdlpghgasega 43 
                  + e+ ++ g+ ++++d  ++++ +g+
  MMETSP0890-20130614|36441_1 403 VIEQTHQTGWLCAVFDSLHTNNENGQ 428
                  56677777888888886555555444 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.1   7.5e-07    0.0026      28     209 ..     103     370 ..      97     379 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.5e-07
                  HHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGG..GEEEEEEESB--..................................................................................HHSHCSHSTTCHC.HHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT.......-TSSEEEEECCTTSCCHHCHHHHHHHCSTTEEEEEE CS
   PF00561.15  28 ddlardleavldalglkkltlvGhSmGGmialayaaeypd..rvkamvllgtva..................................................................................vlsdglssdvlnr.gstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwdvtetlkt.......ilvptlvisgtdDplvpykaseklaelipksqlvvi 209
                   dl ++++++    +l  l +v+hS  + +  +y+a  ++   v ++v+++ ++                                                                                   ++d++    ++  +++   +    + + s+ ++ + +da    ++l+++ ++ + ++ +++ + +    r++  +++ + + +l++ ++++ k+       + vp+l+++++dDplv+ ++  ++ e++ +s l+++
  MMETSP0890-20130614|36441_1 103 KDLDAAIRTIHSNYPLAPLFIVAHSASAHLLVQYLAAVGKntPVVSAVTISGCLdlaraydfvkhtknrtyrsvfargmrrcirrhyahdptlisseqrqrraarllkikcgadimydrhvaslnkarglpprppeLDDDAMELMDTQDpAFMNSGRRRRQRKCRSDLDNEFEKDAL--PTTLNTNSSSTETTASQSKVTPQ---KRKGRFHRT-QTVALLESTRPHYRKParllldhVRVPLLIVHARDDPLVSHDDNLSWPEAVKNSCLITV 370
                  5788888899999999999999999999999999999999996666666666666*********************************88888888888888888888888888888888888888888888777633333333333332444444444444444444444444444..9******9999999999999999...999999999.*****************************************998888888877777665 PP

>> PF06821.8  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.9e-05      0.13       2      88 ..      61     153 ..      60     179 .. 0.74
   2 !    4.4   0.0    0.0066        23     101     141 ..     323     363 ..     311     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.9e-05
                  EEE------TTSTTHHHHHHHHHH-..-EEEEE--TS--HHHHHHHHHGGGGG--TT.....EEEEEE----HHHHHHHH.---SS-E--EEEE- CS
    PF06821.8   2 livpGlkgsgpeHWqswlekklpaa..rrveqadweqPdledWvaeleaavaaaeek.....vvlvAHSlgclavlhaae.lqsrakvagalLVA 88 
                  l++ G++g +++H  + ++ + +a+  r v  + w   d  +W + l+aa+++++++     + +vAHS ++++++++++ + ++ +v +a+ ++
  MMETSP0890-20130614|36441_1  61 LLMYGIGGTRDDHYMKSMALACRARgwRPVVLSYWR-LDWYEW-KDLDAAIRTIHSNyplapLFIVAHSASAHLLVQYLAaVGKNTPVVSAVTIS 153
                  788899999999998877666555442666666664.456677.5699999999988778889**************998766666777766554 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0066
                  GGGGGT-----HHHHHHEEEEETT-SSS-HHHHHHHHHHTT CS
    PF06821.8 101 klaefaplpreklpfpslvvaSenDpyvefeeaeelaeawg 141
                  + ++ a+l  ++ ++p l+v +++Dp+v+ ++  ++ ea  
  MMETSP0890-20130614|36441_1 323 HYRKPARLLLDHVRVPLLIVHARDDPLVSHDDNLSWPEAVK 363
                  556666777789999**************999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       497  (0.0363517); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:01.05
# Mc/sec: 1205.03
//
Query:       MMETSP0890-20130614|36449_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.019   12.1   8.5       0.02   12.1   5.9    1.0  1  PF12128.3  Protein of unknown function (DUF3584)
       0.23   11.2   1.7       0.33   10.7   1.1    1.2  1  PF13312.1  Domain of unknown function (DUF4081)
       0.36   10.5   4.4       0.45   10.1   3.1    1.2  1  PF08630.5  Dfp1/Him1, central region
       0.81    9.5  12.6        2.1    8.2   8.5    2.0  1  PF14197.1  Centrosome localisation domain of PPC89
        0.9    9.1   5.3          1    8.9   3.6    1.4  1  PF08286.6  Spc24 subunit of Ndc80
       0.96    9.5   6.7        1.1    9.3   4.6    1.2  1  PF02413.12 Caudovirales tail fibre assembly protein
          1    9.0   8.9       0.68    9.6   5.4    1.4  1  PF14235.1  Domain of unknown function (DUF4337)
        1.1    9.5   4.3        1.5    9.1   3.0    1.2  1  PF06156.8  Protein of unknown function (DUF972)
        1.1    8.6   6.6        1.8    7.9   4.6    1.5  1  PF04977.10 Septum formation initiator
        1.2    8.7   8.9       0.82    9.3   4.4    2.0  2  PF08606.6  Prp19/Pso4-like
        1.5    8.1   3.6        1.8    7.8   2.5    1.2  1  PF01988.14 VIT family
        1.7    7.9   6.0        2.8    7.3   4.2    1.4  1  PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein
          3    7.9   9.1        5.4    7.1   6.3    1.7  1  PF10883.3  Protein of unknown function (DUF2681)


Domain annotation for each model (and alignments):
>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.9   1.9e-05      0.02     473     547 ..      22     100 ..       6     104 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.9e-05
    PF12128.3 473 aadealekaqeelekaeaevealqseeeqlrkkrdealealqkaerrleelrealee....leeqllPqagsLlefLrk 547
                  +  ++leka++e+ek ++e+++l +e +q+ ++rd al+ l+ a r+ ++l+ al       ++  +P+++ L + L +
  MMETSP0890-20130614|36449_1  22 QLWNQLEKAEREVEKMRKEQKKLRAESQQALAQRDSALRLLEIATREKRNLAIALRHertiTRRNTSPKTDELAKLLDQ 100
                  56689************************************99999888776555431111456677777777777755 PP

>> PF13312.1  Domain of unknown function (DUF4081)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00031      0.33      57      98 ..      20      62 ..      15      71 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00031
    PF13312.1 57 vlalwerLeetWgparevRaeQpllviseep.avapdpaVrrv 98
                 + +lw++Le++  +  ++R+eQ  l +++++   + d a+r  
  MMETSP0890-20130614|36449_1 20 AWQLWNQLEKAEREVEKMRKEQKKLRAESQQaLAQRDSALRLL 62
                 679**********************999887355678887765 PP

>> PF08630.5  Dfp1/Him1, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.1   0.00043      0.45      10      72 ..      19      93 ..       9     100 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00043
    PF08630.5 10 lkmKvWs.leKlqrflktlekeekeeekekak.............tkakkksdLsqlLeeEkvyGpsdrdpkakrkd 72
                     +W+ leK++r ++++ ke+k+ ++e+++              ++++k++L   L++E+    + r+++ k+++
  MMETSP0890-20130614|36449_1 19 EAWQLWNqLEKAEREVEKMRKEQKKLRAESQQalaqrdsalrlleIATREKRNLAIALRHERTI--TRRNTSPKTDE 93
                 456788549***************9999988899999*****9999999999999999999975..44444444554 PP

>> PF14197.1  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.5     0.002       2.1       6      52 ..      19      72 ..      17     100 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.002
    PF14197.1  6 evktLrnrldsltrkvqvheielksLnk.......ErdsalrqLgvAyeelneL 52
                 e  +L n+l+ ++r+v++   e k+L++        rdsalr L+ A +e  +L
  MMETSP0890-20130614|36449_1 19 EAWQLWNQLEKAEREVEKMRKEQKKLRAesqqalaQRDSALRLLEIATREKRNL 72
                 556789**********************66666666777777777776666665 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.6   0.00097         1       6      45 ..      18      57 ..      13      98 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00097
    PF08286.6  6 nekvrlakelndleselenlqseleelkeeleeleeqene 45
                  e  +l ++l++ e+e+e++++e+++l++e ++   q ++
  MMETSP0890-20130614|36449_1 18 YEAWQLWNQLEKAEREVEKMRKEQKKLRAESQQALAQRDS 57
                 56678999**********************9998888777 PP

>> PF02413.12  Caudovirales tail fibre assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.6     0.001       1.1      40     118 ..      17      88 ..       3      99 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.001
   PF02413.12  40 ppgkwdvwdgeglpvwvtda.keelqaqaeekkqqllaqasekiaplqdavdlgmatdeekaqLtawkkYrvlLnrvDts 118
                             +++ w + + +e+++++  +++++l a+ +++ a+   a++l ++   ek  L+  +++    +r  ts
  MMETSP0890-20130614|36449_1  17 KYE--------AWQLWNQLEkAEREVEKMRKEQKKLRAESQQALAQRDSALRLLEIATREKRNLAIALRHERTITRRNTS 88 
                  444........45555555549999***************************9999999999999888887777776666 PP

>> PF14235.1  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.4   0.00065      0.68      67     108 ..      17      60 ..       2      76 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00065
    PF14235.1  67 s..aaelkkkiekykkekkrikseakeleakakeaeeesdealh 108
                  +  a +l +++ek ++e +++++e+k+l+a++++a +++d+al+
  MMETSP0890-20130614|36449_1  17 KyeAWQLWNQLEKAEREVEKMRKEQKKLRAESQQALAQRDSALR 60 
                  234677889999**************************999875 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.0    0.0014       1.5       5      82 ..      22      98 ..      16     101 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0014
    PF06156.8  5 elfdklseleeqleelleeleelkkelkell.eenaelkleneklrerleeleeeekkkekkkkkkklgegkdnLaklY 82
                 +l ++l++ e+++e++ +e ++l++e ++ l +++++l+l   + re+ +     + ++e++ + +++++ +d+Lakl 
  MMETSP0890-20130614|36449_1 22 QLWNQLEKAEREVEKMRKEQKKLRAESQQALaQRDSALRLLEIATREKRNLAI--ALRHERTITRRNTSPKTDELAKLL 98
                 57788889999999999999999988876541567778776666666544332..234444555555677777777775 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.6    0.0017       1.8      16      49 ..      17      50 ..      11      75 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0017
   PF04977.10 16 llalyqlkqeiaalqaelaklkaeneeLeaevkd 49
                  ++ +ql +++++ ++e++k+++e+++L ae ++
  MMETSP0890-20130614|36449_1 17 KYEAWQLWNQLEKAEREVEKMRKEQKKLRAESQQ 50
                 5677888999999999999999999999988554 PP

>> PF08606.6  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.4   0.00078      0.82      16      65 ..      26      75 ..      21      80 .. 0.84
   2 ?   -0.6   0.0      0.95   9.9e+02      27      47 ..      83     103 ..      74     104 .] 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00078
    PF08606.6 16 eWDaimlEtFelrkqleqlrqeLsqaLYqhDAAvrViArllkerdearea 65
                 + +    E  ++rk+ ++lr e  qaL q+D+A r    +++e+++   a
  MMETSP0890-20130614|36449_1 26 QLEKAEREVEKMRKEQKKLRAESQQALAQRDSALRLLEIATREKRNLAIA 75
                 55555667789*************************99999999887655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.95
    PF08606.6  27 lrkqleqlrqeLsqaLYqhDA 47 
                  +r++++  + eL++ L q  A
  MMETSP0890-20130614|36449_1  83 TRRNTSPKTDELAKLLDQAQA 103
                  677777778888888877665 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.5    0.0017       1.8      60     125 ..       9      84 ..       3      98 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0017
   PF01988.14  60 rdleeaelereqqeverspegeveeladilkak.glseetaaqvaeelta........keda.ldfllkeelglee 125
                  +dl+ +e++ e++++ +++e+   e++++ k++ +l+ e  + +a++ +a         e++ l++ l+ e  +++
  MMETSP0890-20130614|36449_1   9 KDLMLKERKYEAWQLWNQLEKAEREVEKMRKEQkKLRAESQQALAQRDSAlrlleiatREKRnLAIALRHERTITR 84 
                  7888899999999999999999999999999995666555555555433355555555444557777777766666 PP

>> PF04521.8  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.2    0.0026       2.8      67     117 ..      22      70 ..      13      73 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0026
    PF04521.8  67 lawrsaqlseleleLekLerreeqLktqiqkltaaaklakaekevkakrkr 117
                    w   ql+++e e ek+++ +++L+++ q+++a++++a    e++++ kr
  MMETSP0890-20130614|36449_1  22 QLWN--QLEKAEREVEKMRKEQKKLRAESQQALAQRDSALRLLEIATREKR 70 
                  4455..9*****************************999888887777766 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.3    0.0051       5.4      21      52 ..      23      54 ..      18      99 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0051
    PF10883.3 21 lllklkkaerenekLqkeneqlktekavaete 52
                 l+ +l+kaere+ek+ ke++ l++e ++a ++
  MMETSP0890-20130614|36449_1 23 LWNQLEKAEREVEKMRKEQKKLRAESQQALAQ 54
                 6779*********************9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1947  (0.142408); expected 273.4 (0.02)
Passed bias filter:                     1007  (0.0736542); expected 273.4 (0.02)
Passed Vit filter:                       129  (0.00943534); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.43s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 377.61
//
Query:       MMETSP0890-20130614|36458_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-29  101.5   0.0    5.3e-29  101.2   0.0    1.2  1  PF02348.14 Cytidylyltransferase
      2e-05   24.7   0.0    2.9e-05   24.2   0.0    1.3  1  PF12804.2  MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.023   14.1   0.1      0.042   13.2   0.0    1.5  1  PF00107.21 Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> PF02348.14  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   1.2e-32   5.3e-29       2     159 ..       5     172 ..       4     214 .. 0.92

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 1.2e-32
                  EEEEE-S--SS--STTTSB----BHHHHHHHHHHH---.SEEEEEES-HHHHHHHHH---EEEE--TTCSSTTHHHHHHHHHHTTT.TTS.EEEEE-TT-TT--HHHHHHHHHHHHHCTT-.........CEEEEEEE--SHHHHTSTTSTEEEETTT--EEEEESSES CS
   PF02348.14   2 aIipARsgSkRlpgKnlldlggkpliayvieaalqsklfekvvvaTDseeiadiakkygaevlvrreslesdtertleavkaflad.nee.iivnlqGdepllqptsikraietlreaqed.........ylstlvqkvvseeevlkandlktllddagaaayfeespi 159
                  a+i+AR+gSk++p Kn+++l+g+pl++y ++aal s+ f kvvv++D+ ei +iakk+gae++ r + ++ dt+++   ++++    +e    + +q ++pl ++ + k+ ++  +++++d         ++   v++ + ++++ + +++k++ +++++ ++ e+  +
  MMETSP0890-20130614|36458_1   5 ALILARGGSKGIPKKNIKKLNGVPLLVYNVKAALVSGEFAKVVVSSDDAEILEIAKKAGAEAFERDPITAIDTASSEAGIEDYVRRtPECdFLCLIQCTSPLTDANDFKNGFALFKSKNADslvtvvrthRFLWRVDEDG-QASAKNYDPVKRPRRQDWQGELIENGAF 172
                  79**********************************************************************************998777899*************************9998888888887777777777.8999999999999999999888877665 PP

>> PF12804.2  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   6.4e-09   2.9e-05       2     179 .]       6     210 ..       5     210 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.4e-09
                  EEE-----------GGG-B----BHHHHHHHHHTTS...EEEEE-SSHHHHHHHHTTS-S-EE--TT-....--------HHHHHH-...--EEEEETT-TT--HHHHHHHHH--------EEEEESSSB.................-TTEE-GGGHHHHHHHH.H-----THH.........HH.H-EEEEEGGTTGG----SHHHH CS
    PF12804.2   2 viLAGGrSsRmggdKallplggkpllervldalraag.vdevvvvtndeeieaaleglgvtvvededp....gkgplaglaaalaaaegadavlvlacDmPlltaellerllealaesgadvvvpryeger...............ghpllfsrsllpaleallgdrgarrllr.........al.ervalvevpdealfdvdtpedl 179
                  +iLA G S+     K   +l+g pll + ++a+   g +++vvv+++d ei++ +++ g++ +e ++      +   ag+   +++ +++d + ++ c  Pl +a+  ++ ++ +++++ad +v + + +r                 p+  +r  +++++  l ++ga  +++         +l  +v  +e+++e+l+ +d   d+
  MMETSP0890-20130614|36458_1   6 LILARGGSKGI-PKKNIKKLNGVPLLVYNVKAALVSGeFAKVVVSSDDAEILEIAKKAGAEAFERDPItaidTASSEAGIEDYVRRTPECDFLCLIQCTSPLTDANDFKNGFALFKSKNADSLVTVVRTHRflwrvdedgqasaknYDPV--KRPRRQDWQGELIENGAFYIFKvssfqssgsRLsGKVVALEMSEETLVEIDSLTDW 210
                  67775555543.35666778*******999988888559**************99999988766643311113456677888889999****************************9999999999887776777777744443331111..11122233322334565555555555555555556777777888888888877765 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.1e-06     0.042       5      38 ..      32      67 ..      28      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.1e-06
                 HHHHHHHHH-..-EEEEEESSHHHHHHHHH----EE CS
   PF00107.21  5 aavqlAkalG..arviavdsseeklelakelGadhv 38
                 + v++A  +G  a+v++ + ++e le+ak+ Ga+++
  MMETSP0890-20130614|36458_1 32 YNVKAALVSGefAKVVVSSDDAEILEIAKKAGAEAF 67
                 67999****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.37s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 864.94
//
Query:       MMETSP0890-20130614|36463_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.075   13.2   0.1       0.13   12.4   0.1    1.4  1  PF00505.14 HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> PF00505.14  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.5e-06      0.13      19      49 ..      95     125 ..      79     138 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.5e-06
                  HHHHSTTS-HHHHHHHHHHTTTTS-HCCHHH CS
   PF00505.14  19 lkaenPdlkvaeiskklgekWkelseeeKkp 49 
                  l + +P+ +  ++ kkl+++W++ +e++Kk 
  MMETSP0890-20130614|36463_1  95 LYSYHPTGNMGDLPKKLEAEWRQRHEQDKKA 125
                  56789************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       386  (0.0282329); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 654.24
//
Query:       MMETSP0890-20130614|36476_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-08   31.5   0.0      9e-08   31.4   0.0    1.0  1  PF00326.16 Prolyl oligopeptidase family
     0.0035   17.1   0.1     0.0036   17.1   0.1    1.0  1  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.066   12.8   0.0      0.066   12.8   0.0    1.0  1  PF12695.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     2e-11     9e-08      65     104 ..      13      52 ..       6      55 .] 0.94

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2e-11
                  GEEE--------HHHHHHHH-GGG---EEEE-----TTTG CS
   PF00326.16  65 rlaitGgSyGGylvgaalnqrpdlFkaavaqvgvvdwlty 104
                  +++++G S+GG+ +g a+ ++p+lF+a++  v+++d l +
  MMETSP0890-20130614|36476_1  13 QIVAWGRSAGGLSIGGAVHRAPELFSAVLLDVPFLDPLGT 52 
                  689*********************************9876 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.8e-07    0.0036      64     101 ..      10      47 ..       2      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.8e-07
                  -.--EEEE--------HHHHHH----.EEEEEEE---- CS
    PF12697.2  64 glrpvvlvGHSlGgavalaaaarrpdlvrglvlidppg 101
                    +++v +G S Gg+ +  a++r p+l+++++l  p++
  MMETSP0890-20130614|36476_1  10 KFPQIVAWGRSAGGLSIGGAVHRAPELFSAVLLDVPFL 47 
                  44789**************************9999998 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.066      55      91 ..       9      46 ..       1      54 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
    PF12695.2 55 ldleriilvGhSlGGgvalelagrddrvkglvllap.f 91
                 +++ +i+ +G+S+GG  +  ++ r +++ ++vll+  f
  MMETSP0890-20130614|36476_1  9 KKFPQIVAWGRSAGGLSIGGAVHRAPELFSAVLLDVpF 46
                 4789****************999999999999887425 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       117  (0.00855764); expected 273.4 (0.02)
Passed bias filter:                      114  (0.00833821); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.32s 00:00:00.62 Elapsed: 00:00:00.82
# Mc/sec: 160.73
//
Query:       MMETSP0890-20130614|36473_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-66  221.5   0.0    1.3e-65  221.0   0.0    1.2  1  PF00069.20 Protein kinase domain
    1.2e-36  126.0   0.0    1.7e-36  125.5   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    9.9e-14   50.9   0.0    1.6e-13   50.2   0.0    1.3  1  PF09757.4  Arb2 domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.0   2.8e-69   1.3e-65       2     260 .]     365     625 ..     364     625 .. 0.94

  Alignments for each domain:
  == domain 1    score: 221.0 bits;  conditional E-value: 2.8e-69
                  EEEEEEE----EEEEEEEETTCCE...EEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEE..CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--....HHHHHTSGGH CS
   PF00069.20   2 elleklGsGsfGkVykakkkktgk...kvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkl..eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt....aeeilkhpwl 260
                   ll+ +G+G+fGkV+ ++kk +++   ++A+K+lkk+    k + ++++ E +il +++Hp+iv+l  +f+++++lylv++y++gg+lf +l+k++ +see ++++  +++ +l++lH+ng+i+rDLK eNiL+d+ g++ ++DFGl+k+      +++ltt++gt eY+APE+l+ + +y+++vD+Ws+G++lye++  ++pf+++   +++ +++ i +++ +++   +    + +k +++ ll+kdpa+Rl     aeei+k++++
  MMETSP0890-20130614|36473_1 365 DLLRVVGKGAFGKVMLVRKKANQDqgrIFAMKVLKKSVIAAKGQTEHTKsERAILCEIRHPYIVRLRYAFQSDEKLYLVTDYYNGGSLFYHLRKSRGFSEERARFYGAELVLALDHLHQNGVIYRDLKLENILMDHLGHIALTDFGLSKENvtDVFNSQLTTFCGTAEYIAPELLK-GHKYGASVDWWSFGILLYEMMGFRTPFYEK---NRKLMFHGIINCEPSFPPHFT----QPAKVILRLLLHKDPAERLGthggAEEIKKTEFF 625
                  67899*********7666655554444**********9988887777777***************************************************************************************************98889999*******************.******************************...999**************9988....88*****************988889999998886 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0   3.8e-40   1.7e-36       3     249 ..     366     609 ..     364     613 .. 0.89

  Alignments for each domain:
  == domain 1    score: 125.5 bits;  conditional E-value: 3.8e-40
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeR 249
                  l + +G+GafGkV+  + k  ++++    a+K+lk+   a++ ++e+  +e +i+++++hp iv+l  ++ ++e+l++vt+y +gG+L   Lrk+  + ++ ++   + +++  ++++L+++ ++ rdL   N+L+++  ++ ++DfGL+++  +d   ++ ++     +++apE+lk +k+    D WsfG+ll+E++ +  +p+ + + + +++ + +  + + p + ++  + +++  ++++p+eR
  MMETSP0890-20130614|36473_1 366 LLRVVGKGAFGKVMLVRKK-ANQDQGRIFAMKVLKKsvIAAKGQTEHTKSERAILCEIRHPYIVRLRYAFQSDEKLYLVTDYYNGGSLFYHLRKS--RGFSEERARFYGAELVLALDHLHQNGVIYRDLKLENILMDHLGHIALTDFGLSKENVTDVFNSQLTTFCGTAEYIAPELLKGHKYGASVDWWSFGILLYEMMGFR-TPFYEKNRKLMFHGIIN-CEPSFPPHFTQPAKVILRLLLHKDPAER 609
                  67899**********9999.888888999*****8844456667999999********************************************8..9999999999*********************************************96666556666666899******************************965.89988777776666655.5567778899999999999999999999 PP

>> PF09757.4  Arb2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   3.5e-17   1.6e-13      43     182 .]      18     153 ..       8     153 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 3.5e-17
    PF09757.4  43 e..askldrlhdvirsyqserLsnkykglk.lsLpivrtalpksfedqIlasp.nillsaekllvvihdppe....iwanrdpitggleagssvvvdvkkyikwakeegygvidvNipqlllevekkekatynpssaaqelalyvwdn 182
                  e  +++   l ++++ y++++L+++  gl  +++p    +++++    I++s+ + +++a+k++++i ++      iw+++ + + gleags+++      +++  ++gy v ++N++ +  + +k+ + +   s + + +al+v+dn
  MMETSP0890-20130614|36473_1  18 EarNKEDASLLEAVTTYVQNELKKL--GLVeHWIP----DAEEEVRCCIYMSSfEEIEKAQKMVILIQNQVGskpgIWSRSLCLSKGLEAGSMLP-----AVEALLKAGYSVCVLNPNTNSIQ-TKQGRVPIANSFSPENHALFVFDN 153
                  34466677899**************..77779999....9999999999999745677*********998666888*******************.....**********************9.99********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.37s 00:00:01.39 Elapsed: 00:00:01.03
# Mc/sec: 1609.98
//
Query:       MMETSP0890-20130614|36484_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-09   37.2   0.9    1.7e-06   27.9   0.0    2.3  2  PF00106.20 short chain dehydrogenase
    2.2e-07   30.8   0.0     0.0016   18.1   0.1    2.1  2  PF13561.1  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.4e-10   1.7e-06       2      93 ..      21     113 ..      20     146 .. 0.77
   2 !    7.8   0.4   0.00036       2.5      96     166 ..     191     271 ..     122     272 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.4e-10
                  EEEE---------HHHHHHHHHSSEEEEEEESS...SHHHHHHH..HHHHHH---EEEEEE--TTSHHHHHHHHHHHH.HH----SEEEEE---TT- CS
   PF00106.20   2 tvliTGGlgglGlalArwLveegarhlvlvsrr..edapgaael..iaelealgaevtvvacDvadrdalaallaeir.kalgpldgvvhnagvldd 93 
                  t+l+TG+   +G+ +A +L+++ga ++  +sr       +++    ++ + +   + +v+ +D  d +a+ al + i+ ++   ld++++na  +  
  MMETSP0890-20130614|36484_1  21 TALVTGARIKIGHCVALKLLRAGA-KVFTTSRFptD---ALERFqqASDYIKWQHRLEVIGIDFRDLSAVCALANYIDrNSPDGLDILINNACQTVR 113
                  99********************66.88889998532...33333113334456699**********************888899********87655 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00036
                  CCSC.HHHHHHHHHHHTHHHHHHHHHHHH......HH.---EEEEEECHHHHSSTT.HHH...HHHHCHHHCCHHHHHHHH CS
   PF00106.20  96 leeltperlervlapkvtgawllheltld......ad.lgafvlfSSvagvlgspgqaaY...aaakaaldalaesrraeg 166
                  l+++   + ++++a++  + + l+ ++++      ad   ++v +S + + +       +    aak+al++++++ +a++
  MMETSP0890-20130614|36484_1 191 LADVPLSEAAECFAVNTLAPLALTSQLKPamlrnrADrSRFIVQVSAMEAKFNRIKTIYHphtNAAKSALNQIVRTSAADY 271
                  5566777889*******************9998774447777777777777655544333223688888888888877765 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   4.8e-05      0.33       8      81 ..      31     108 ..      28     130 .. 0.84
   2 !   18.1   0.1   2.3e-07    0.0016      85     184 ..     183     287 ..     120     311 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.8e-05
                  ---HHHHHHHH---EEEE---HH-....---------------------TT-SGGHHHHHHHHHHH.---BSEEEEEE CS
    PF13561.1   8 igwaiakalaeaGaevilttwvpa....klkkkvqelakelpadvvplDvtseedvselaekvkedlggkiDilvhsi 81 
                  ig  +a +l +aGa+v  t++ p+    + +++ + ++ ++  +v+  D+ +   v  la+++  +  + +Dil++ +
  MMETSP0890-20130614|36484_1  31 IGHCVALKLLRAGAKVFTTSRFPTdaleRFQQASDYIKWQHRLEVIGIDFRDLSAVCALANYIDRNSPDGLDILINNA 108
                  8899****************9996333355566666666667889*********************99******9865 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.3e-07
                  -T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB---.--EEEEEE----....-------.--------THHHHHHHHHH----S---EEEEEE---- CS
    PF13561.1  85 peervekplletsrkgllaalsisayslvsllkaalpknlmneg.gSivalsylase....rvipgyg.gmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplk 184
                   ++  +  l ++  +++ +++ ++ +  ++l++ ++p++l n    S   +  +a e    r+   y    ++aK+aL +++R+ A ++++   i +n++  G+++
  MMETSP0890-20130614|36484_1 183 DTNSWKMTLADVPLSEAAECFAVNTLAPLALTSQLKPAMLRNRAdRSRFIVQVSAMEakfnRIKTIYHpHTNAAKSALNQIVRTSAADYAN-DHIYMNAVDTGWVN 287
                  455567788899999999999999999999999999966666546565555555444113366777889999******************9.************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      319  (0.0233324); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:01.09
# Mc/sec: 758.48
//
Query:       MMETSP0890-20130614|36497_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-05   22.2  22.9     0.0036   17.1   4.3    2.6  2  PF00008.22 EGF-like domain
     0.0019   18.1  11.5     0.0019   18.1   8.0    3.2  3  PF07974.8  EGF-like domain
  ------ inclusion threshold ------
      0.014   15.3   3.7      0.014   15.3   2.5    3.7  3  PF12661.2  Human growth factor-like EGF
       0.55   10.0  22.1        2.9    7.7   4.7    3.0  3  PF00131.15 Metallothionein
        9.3    5.7  12.7        6.7    6.2   5.0    2.4  2  PF08119.6  Scorpion acidic alpha-KTx toxin family


Domain annotation for each model (and alignments):
>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.3   1.3e-06    0.0036       6      31 ..       4      25 ..       2      26 .. 0.95
   2 !   10.6   6.1   0.00014      0.38       1      25 [.      32      51 ..      27      52 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.3e-06
                 CSS--EEEEECCTEEEEE--TTCTTT CS
   PF00008.22  6 CsngGtCvdtpgggytCeCpeGytGk 31
                 C ++G C++      tC+C  G++G+
  MMETSP0890-20130614|36497_1  4 CAHHGNCTNPN----TCTCEAGWDGD 25
                 99*********....**********7 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00014
                 TTTTTCSS--EEEEECCTEEEEE-- CS
   PF00008.22  1 CspnpCsngGtCvdtpgggytCeCp 25
                 C++  C++gG+Cv  +    tC+C 
  MMETSP0890-20130614|36497_1 32 CAQ-ECYHGGRCVAPD----TCKCV 51
                 555.9***********....****6 PP

>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   8.0   7.1e-07    0.0019       7      32 .]       3      27 ..       1      27 [. 0.92
   2 !    5.4   5.4    0.0065        18       1      23 [.      32      50 ..      32      52 .. 0.83
   3 ?    1.3   0.1      0.12   3.4e+02      25      32 .]      78      85 ..      77      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.1e-07
    PF07974.8  7 iCgghGtCvkqcgkCvCdsgyqGktC 32
                 +C +hG C ++ ++C C++g+ G++C
  MMETSP0890-20130614|36497_1  3 TCAHHGNCTNP-NTCTCEAGWDGDDC 27
                 5*********9.46************ PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0065
    PF07974.8  1 CsadgliCgghGtCvkq.cgkCvC 23
                 C +   +C ++G Cv + +  C+C
  MMETSP0890-20130614|36497_1 32 CAQ---ECYHGGRCVAPdT--CKC 50
                 764...5**********76..999 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.12
    PF07974.8 25 sgyqGktC 32
                  g++G +C
  MMETSP0890-20130614|36497_1 78 TGWTGFDC 85
                 59****** PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   2.5   5.2e-06     0.014       1      13 []      15      27 ..      15      27 .. 0.97
   2 ?   -0.6   0.8      0.61   1.7e+03       1       5 [.      47      51 ..      47      52 .. 0.78
   3 ?    2.5   0.3     0.061   1.7e+02       7      10 ..      79      82 ..      77      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.2e-06
    PF12661.2  1 kCqCppGyTGdnC 13
                 +C+C +G+ Gd+C
  MMETSP0890-20130614|36497_1 15 TCTCEAGWDGDDC 27
                 7************ PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.61
    PF12661.2  1 kCqCp 5 
                 +C C 
  MMETSP0890-20130614|36497_1 47 TCKCV 51
                 79995 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.061
    PF12661.2  7 GyTG 10
                 G+TG
  MMETSP0890-20130614|36497_1 79 GWTG 82
                 ***9 PP

>> PF00131.15  Metallothionein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.9    0.0068        19      45      62 ..       2      19 ..       1      20 [. 0.83
   2 ?    7.7   4.7    0.0011       2.9      42      62 ..      31      51 ..      24      52 .. 0.86
   3 ?    3.1   0.0     0.029        80      19      39 ..      84     104 ..      78     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0068
   PF00131.15 45 kgCvckkkctepkkcsCc 62
                 ++C+ +++ct+p++c+C+
  MMETSP0890-20130614|36497_1  2 QTCAHHGNCTNPNTCTCE 19
                 689999999999999996 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
   PF00131.15 42 kCakgCvckkkctepkkcsCc 62
                  Ca++C  +++c  p++c+C 
  MMETSP0890-20130614|36497_1 31 LCAQECYHGGRCVAPDTCKCV 51
                 59******************7 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.029
   PF00131.15  19 kcenCkCtsckKscssckcsg 39 
                   c+   Ct++kK +++  +++
  MMETSP0890-20130614|36497_1  84 DCSVPICTQAKKFTKNVAPAD 104
                  5777789*****999988876 PP

>> PF08119.6  Scorpion acidic alpha-KTx toxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.042   1.2e+02      25      35 ..       8      18 ..       6      20 .. 0.88
   2 ?    6.2   5.0    0.0024       6.7      14      35 ..      29      50 ..      23      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.042
    PF08119.6 25 GvCDGPqkCkC 35
                 G C  P  C C
  MMETSP0890-20130614|36497_1  8 GNCTNPNTCTC 18
                 88********9 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0024
    PF08119.6 14 viYCkGeeYstGvCDGPqkCkC 35
                 +  C  e Y  G C  P  CkC
  MMETSP0890-20130614|36497_1 29 IPLCAQECYHGGRCVAPDTCKC 50
                 447999**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.89
# Mc/sec: 298.87
//
Query:       MMETSP0890-20130614|36500_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-11   41.3   0.0    6.6e-10   38.1   0.0    2.1  1  PF14398.1  YheC/D like ATP-grasp
    1.9e-08   33.4   0.1     0.0017   17.2   0.0    2.1  2  PF03133.10 Tubulin-tyrosine ligase family
    1.1e-07   31.6   0.0    2.9e-07   30.2   0.0    1.7  2  PF13535.1  ATP-grasp domain
    4.7e-05   23.1   0.0    0.00087   19.0   0.0    2.1  2  PF02655.9  ATP-grasp domain
    0.00066   18.7   0.0      0.012   14.6   0.0    2.2  2  PF02955.11 Prokaryotic glutathione synthetase, ATP-grasp domain
     0.0027   16.7   0.0     0.0047   15.9   0.0    1.3  1  PF14397.1  Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.9e-13   6.6e-10      13     238 ..      51     291 ..      43     302 .. 0.75

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.9e-13
    PF14398.1  13 negffnKwevheaLskeeelrpyLpetelvksaeslkklls..rykkvylKPasGskGkgiirltkkegkyivrtedekkeqtkkfsslaklaselkkklskkkylvQqgidlieiegrpvDfRvlvqKneeGkWtvtg.iavrvagknsivtnlssGgtlktleellads..ee.....keklekkLeea...alkiaelldkalear.............lgELGlDlglDkegr.iWllEvNskPgkksf 238
                  ++++ +K ++  aL+++ + + + p +  + +aes + l++    k+++lKPa+G +G gii +++       ++++ +      +s++ ++   +++++  +++++Q  i  i+++ +p+ +R    + +   ++ ++   vrva+ + ++tn   G++   l++l++ s  +      +  +   L        ++ e +d++ ++              ++  G+D+ lD+e++ ++llE N  P++   
  MMETSP0890-20130614|36500_1  51 YNKIDDKADLVFALENAGVPESFTPWSVVL-TAESDHTLIKgkNFKSMILKPANGYGGEGIIIVNSVV----EAMTHIR------ASEALAAELPFACEAAPQRFVLQEFIHSITVDNQPFHLRTYAARVDGKSYVYIAnHEVRVAKPENFITNGLAGADRRLLSQLFDPSlgDRlaafvA-SICLTLVPDcndTREFIEKVDDHANEDdeeklalvnnedcFAVAGIDIILDSEDNmLKLLEFNVNPACPKK 291
                  567788999999999999999999999555.5577777775224589*****************8776....3333333......356677888889999999**********************99997766666554178**************************9885522333431.22222222201123334444445544478889999999*9999********9987359********98765 PP

>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.3e-07    0.0017      43     126 ..      73     166 ..      43     179 .. 0.82
   2 !   14.2   0.1   6.2e-06     0.014     224     273 ..     248     298 ..     231     306 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.3e-07
   PF03133.10  43 flprtfvlpadlrefveeaekeesntwIvKpsasarGkgIrvfnklsdilki.............vsqsqkeplvvqkYierPLLidgrKFDlRlyv 126
                  f p + vl a+ +  + + ++ +s  +I+Kp+++  G+gI+++n++ +                    ++ +++v q++i++   +d++ F+lR y+
  MMETSP0890-20130614|36500_1  73 FTPWSVVLTAESDHTLIKGKNFKS--MILKPANGYGGEGIIIVNSVVEAMTHirasealaaelpfACEAAPQRFVLQEFIHS-ITVDNQPFHLRTYA 166
                  556666666666666666666666..9*****************98776655699*********9888899*********99.9************7 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6.2e-06
   PF03133.10 224 easrlnvqrlkncfelyGvDiliden.lkpwLlEvNasPdlksttkldael 273
                  +  +l + +++ cf++ G+Di++d++    +LlE N +P + ++ ++   +
  MMETSP0890-20130614|36500_1 248 DEEKLALVNNEDCFAVAGIDIILDSEdNMLKLLEFNVNPACPKKIEVSELF 298
                  55667778999************97615579********997777666655 PP

>> PF13535.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.3e-10   2.9e-07       3     124 ..      55     196 ..      53     230 .. 0.79
   2 ?   -1.4   0.0      0.65   1.5e+03     156     176 ..     262     283 ..     216     286 .. 0.56

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.3e-10
    PF13535.1   3 rdKllmrellaeaglp...vprfalvdseedleaaaeeigfpvvlKPadgagslgvrrvddaaeleaalealaaeve.......ldegeflvEeyie.....Gdeysvdglvl..dgel.vflgisryletsppdfsdg..a 124
                   dK+    +l++ag+p   +p++++++ e+d   +  +    ++lKPa+g g +g+ +v++  e+ ++++a +a  +       + +++f+++e+i       + +++ ++    dg+  v++  ++ +  +p +f ++  a
  MMETSP0890-20130614|36500_1  55 DDKADLVFALENAGVPesfTPWSVVLTAESDHTLIKGKNFKSMILKPANGYGGEGIIIVNSVVEAMTHIRASEALAAelpfaceAAPQRFVLQEFIHsitvdNQPFHLRTYAArvDGKSyVYIANHEVRVAKPENFITNglA 196
                  688888899999***996556666666666666655554479************************99777666666888*****************99888899******9999999989999999999999998877443 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.65
    PF13535.1 156 gvfHlEfkltpd.GrlvliEin 176
                   v+ ++++l+++ + l+l+E n
  MMETSP0890-20130614|36500_1 262 AVAGIDIILDSEdNMLKLLEFN 283
                  3445566666665556666665 PP

>> PF02655.9  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.8e-07   0.00087       2      72 ..      55     152 ..      54     156 .. 0.76
   2 ?    1.8   0.0     0.074   1.7e+02     133     153 ..     259     281 ..     237     287 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.8e-07
    PF02655.9   2 sdKlktykaLkeagvk...vP.......skleaeeleee......ekklvvKprdGaGgesvrvvenkeeaeealeele.................vvqefieG 72 
                   dK  ++ aL++agv+   +P       +       +         k++++Kp++G Gge++ +v+   ea   ++  e                 v+qefi +
  MMETSP0890-20130614|36500_1  55 DDKADLVFALENAGVPesfTPwsvvltaE------SDHTlikgknFKSMILKPANGYGGEGIIIVNSVVEAMTHIRASEalaaelpfaceaapqrfVLQEFIHS 152
                  68888899999997663334575443211......111134556699*********************999999988888999999999999999999999976 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.074
    PF02655.9 133 gllGyvGvDlvlkd..eepyviE 153
                  +++ + G+D++l    +   ++E
  MMETSP0890-20130614|36500_1 259 DCFAVAGIDIILDSedNMLKLLE 281
                  8999*******977224444555 PP

>> PF02955.11  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.2e-06     0.012      29      60 ..      92     123 ..      68     158 .. 0.65
   2 ?    1.7   0.0     0.048   1.1e+02     138     170 ..     256     293 ..     223     296 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.2e-06
   PF02955.11  29 eekgdvilKPLdgkgGkgvfrvkkedanlksi 60 
                  ++ +++ilKP +g+gG+g++ v++  + ++ i
  MMETSP0890-20130614|36500_1  92 KNFKSMILKPANGYGGEGIIIVNSVVEAMTHI 123
                  56788***************999865555444 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.048
   PF02955.11 138 LkekgllfvGlDvigd......kltEiNvtsPtgireie 170
                   +e+ + ++G+D+i d      kl+E Nv  P++ ++ie
  MMETSP0890-20130614|36500_1 256 NNEDCFAVAGIDIILDsednmlKLLEFNV-NPACPKKIE 293
                  456778899****9663444445889998.477777776 PP

>> PF14397.1  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-06    0.0047      66     126 ..      87     151 ..      60     156 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2e-06
    PF14397.1  66 afireeepkelvvKpvdgsgGkgieileaddq.vsaekklealyklleenekf...efvvqelik 126
                   +i++++ k +++Kp +g gG+gi+i++ + + ++  + +eal+++l    +     fv qe+i+
  MMETSP0890-20130614|36500_1  87 TLIKGKNFKSMILKPANGYGGEGIIIVNSVVEaMTHIRASEALAAELPFACEAapqRFVLQEFIH 151
                  5677777899****************9988653333333444444443333334469******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.75
# Mc/sec: 1000.08
//
Query:       MMETSP0890-20130614|36507_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 262.93
//
Query:       MMETSP0890-20130614|36514_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-11   41.4   0.1    1.3e-10   40.6   0.0    1.4  1  PF13661.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   9.4e-15   1.3e-10       1      67 [.      69     144 ..      69     146 .. 0.96

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 9.4e-15
    PF13661.1   1 faslianafrhrfaltratrgdffdpHiDadpsql.................gkprflsallYLN.edwdadfdGgtlffddrdg 67 
                  +++++ana         ++ gd fd+HiDadp  +                 gkprf+sal+YL+ ++ ++++ G+ + f+d ++
  MMETSP0890-20130614|36514_1  69 ISPITANA---------PVSGDIFDYHIDADPFWSppspwrdffgayvnrdpGKPRFVSALFYLSePPFGESYLGASTSFLDTPT 144
                  57889999.........*****************************************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 639.03
//
Query:       MMETSP0890-20130614|36517_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-12   44.4   0.0    1.7e-11   43.7   0.0    1.4  1  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.2e-15   1.7e-11       2      82 ..      24     108 ..      23     110 .. 0.93

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.2e-15
                  EEEEEEESS--S-STSSSS-EEEEEEEECTTE....EEEEE--BSS-SSEEEE..EEEEEEESCGGGTEEEEEEEECHSSSCSEE-- CS
   PF00168.25   2 kvkvieAknLpnkdkngtsdpyvkvslggaks....kkkrTrvikntlnPvWn..ekftfevvaeelaeleleVkdedrfgkddflG 82 
                  +++v  +  L + d   +sdpyv +++ g++     +++r+r+ +nt +P +   e+f+f    +  ++l l+V+ded+++kdd+l 
  MMETSP0890-20130614|36517_1  24 TLWVDACSELEKADFMDHSDPYVIIGVRGEDEelthQEQRSRTQTNTGDPFYTpgERFEFA--VKGNEKLILSVYDEDTITKDDLLA 108
                  689999***********************999999888***************99999999..777778***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.46s 00:00:01.07 Elapsed: 00:00:00.82
# Mc/sec: 908.86
//
Query:       MMETSP0890-20130614|36522_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00072   19.7   0.8     0.0011   19.1   0.4    1.5  1  PF12711.2 Kinesin motor
     0.0032   16.6   2.5     0.0052   15.8   1.7    1.3  1  PF05384.6 Sensor protein DegS
  ------ inclusion threshold ------
       0.12   11.5   5.3       0.16   11.0   3.8    1.3  1  PF11932.3 Protein of unknown function (DUF3450)
       0.14   11.6   2.7       0.22   10.9   1.9    1.3  1  PF10224.4 Predicted coiled-coil protein (DUF2205)
        0.2   11.3   0.7       0.25   11.0   0.4    1.2  1  PF12501.3 Phosphate ATP-binding cassette transporter
       0.27   11.1   2.7       0.41   10.5   1.9    1.4  1  PF07798.6 Protein of unknown function (DUF1640)


Domain annotation for each model (and alignments):
>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.4   4.9e-07    0.0011       6      49 ..      61     104 ..      56     106 .] 0.93

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.9e-07
    PF12711.2   6 krLeklldgslsaeslleeeneeLkeEiklLreqveknpevtrf 49 
                  ++L+ +ld++    s+l++++ + ++E k Lr+q+++ +ev+r 
  MMETSP0890-20130614|36522_1  61 QKLQLALDKARDDASFLLQQVDATQAENKRLRAQLDHVSEVLRS 104
                  68999*************************************97 PP

>> PF05384.6  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.7   2.3e-06    0.0052      22      69 ..      53     100 ..      51     104 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.3e-06
    PF05384.6  22 aEkarkeyerlkkeleevkekvsevikevdklekkerkarkrLaeVSr 69 
                  +Ek ++e ++l+  l++ +  +s ++++vd ++ ++++ r++L +VS 
  MMETSP0890-20130614|36522_1  53 QEKEKDERQKLQLALDKARDDASFLLQQVDATQAENKRLRAQLDHVSE 100
                  58999*****************************************96 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.8   7.1e-05      0.16      30      83 ..      52     105 ..      24     106 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.1e-05
    PF11932.3  30 aeqkanaaaaqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenq 83 
                  +++k   ++++ q   dk  d +  ll++ ++ q+e++ l+++ d+++++++++
  MMETSP0890-20130614|36522_1  52 QQEKEKDERQKLQLALDKARDDASFLLQQVDATQAENKRLRAQLDHVSEVLRSR 105
                  35566788999************************************9998875 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.9   9.8e-05      0.22      11      51 ..      52      93 ..      44     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.8e-05
    PF10224.4 11 e.klekeekqrlieqvleLqdsLedLseRveaVkeendKLes 51
                 + + ek+e+q+l+    + +d  + L + v+a + en++L+ 
  MMETSP0890-20130614|36522_1 52 QqEKEKDERQKLQLALDKARDDASFLLQQVDATQAENKRLRA 93
                 44689***********************************86 PP

>> PF12501.3  Phosphate ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00011      0.25      68     124 ..      44     103 ..      32     106 .] 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
    PF12501.3  68 eqlvlaslpeavealeeserslvlsdvrslasgldalv...eaelaaleaeatdvrarla 124
                  + +v ++l ++ e  e ++++l+l ++r  as l + v   +ae ++l+a+ ++v + l+
  MMETSP0890-20130614|36522_1  44 NGTVPDTLQQEKEKDERQKLQLALDKARDDASFLLQQVdatQAENKRLRAQLDHVSEVLR 103
                  778999***************************666655555555555555555555554 PP

>> PF07798.6  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   0.00018      0.41      42      97 ..      49     103 ..       9     105 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00018
    PF07798.6  42 dlvtkeeqekseyqqksdlaklkselvsleksefsnlqaeneklksdleklknkLr 97 
                  d+ ++e+ +  +++ +  l+k++++   l  +++ ++qaen++l+++l+++ + Lr
  MMETSP0890-20130614|36522_1  49 DTLQQEKEKDERQKLQLALDKARDDASFLL-QQVDATQAENKRLRAQLDHVSEVLR 103
                  344444444589999999*******87665.67999**************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       834  (0.0610006); expected 273.4 (0.02)
Passed bias filter:                      524  (0.0383265); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.42s 00:00:00.83 Elapsed: 00:00:00.64
# Mc/sec: 396.90
//
Query:       MMETSP0890-20130614|36520_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-09   36.7   2.3    5.8e-09   35.7   1.6    1.6  1  PF12874.2  Zinc-finger of C2H2 type
    5.5e-09   35.8   2.2    1.5e-08   34.4   1.5    1.8  1  PF12171.3  Zinc-finger double-stranded RNA-binding
    0.00012   22.2   1.7    0.00032   20.8   0.6    2.2  2  PF00096.21 Zinc finger, C2H2 type
     0.0011   19.1   2.6     0.0023   18.0   0.4    2.5  2  PF13894.1  C2H2-type zinc finger
     0.0011   18.5   0.1     0.0048   16.4   0.0    2.2  2  PF00226.26 DnaJ domain
     0.0058   16.6   0.1     0.0058   16.6   0.0    2.6  3  PF12756.2  C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.013   14.8   6.9      0.027   13.8   4.7    1.6  1  PF11931.3  Domain of unknown function (DUF3449)
      0.019   14.7   0.6      0.054   13.3   0.4    1.8  1  PF13912.1  C2H2-type zinc finger
       0.93    9.1   6.3       0.16   11.6   1.1    2.1  2  PF04988.7  A-kinase anchoring protein 95 (AKAP95)


Domain annotation for each model (and alignments):
>> PF12874.2  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   1.6   3.8e-12   5.8e-09       1      25 []     311     335 .]     311     335 .] 0.96

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 3.8e-12
                  TEETTTTEE-SSHHHHHHHH---HH CS
    PF12874.2   1 fyCelCnvtftSesqlksHlqGKkH 25 
                  f C +C++tf+Se+ql++Hlq+K H
  MMETSP0890-20130614|36520_1 311 FACNICKKTFKSEQQLENHLQSKAH 335
                  56**********************9 PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   1.5   9.8e-12   1.5e-08       2      26 ..     311     335 .]     310     335 .] 0.97

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 9.8e-12
                  -B-TTT--B-SSHHHHHHHTT-HHH CS
    PF12171.3   2 fYCvaCdkyFksenqlknHlksKkH 26 
                  f C +C k+Fkse+ql+nHl+sK+H
  MMETSP0890-20130614|36520_1 311 FACNICKKTFKSEQQLENHLQSKAH 335
                  78*********************** PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.3   5.1e+03       4      13 ..     181     190 ..     181     197 .. 0.72
   2 !   20.8   0.6   2.1e-07   0.00032       1      23 []     311     335 .]     311     335 .] 0.90

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.3
                  -----EESSH CS
   PF00096.21   4 pdCgksFsrk 13 
                  ++C k+ +r 
  MMETSP0890-20130614|36520_1 181 QYCRKRDPRV 190
                  69*9987775 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 2.1e-07
                  EE------EESSHHHHHHHHCC..H CS
   PF00096.21   1 yqCpdCgksFsrksnLlrHlrr..H 23 
                  + C++C+k+F++  +L++Hl +  H
  MMETSP0890-20130614|36520_1 311 FACNICKKTFKSEQQLENHLQSkaH 335
                  78*****************987555 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0         1   1.6e+03       4      22 ..     181     199 ..     170     201 .. 0.81
   2 !   18.0   0.4   1.5e-06    0.0023       1      21 [.     311     331 ..     311     335 .] 0.93

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1
    PF13894.1   4 plCgktFttreeLrrHlak 22 
                  ++C k+ ++  ++  H+a+
  MMETSP0890-20130614|36520_1 181 QYCRKRDPRVAQRIAHVAA 199
                  6899999999999999875 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.5e-06
    PF13894.1   1 faCplCgktFttreeLrrHla 21 
                  faC++C ktF++  +L++Hl 
  MMETSP0890-20130614|36520_1 311 FACNICKKTFKSEQQLENHLQ 331
                  89*****************97 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.2e-06    0.0048      38      64 .]       7      33 ..       2      33 .. 0.89
   2 ?   -3.4   0.0       4.8   7.3e+03      48      64 .]      89     105 ..      88     105 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26 38 eeaeekfkeineAyevLsdpekraeyd 64
                 e+a+  f+ei+ Aye L d+  r++yd
  MMETSP0890-20130614|36520_1  7 EKAHIVFQEIQSAYECLIDSHERKWYD 33
                 478889********************9 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.8
                  HHHHHHHTSHHHHHHHH CS
   PF00226.26  48 neAyevLsdpekraeyd 64 
                  ++A++   + e+++++d
  MMETSP0890-20130614|36520_1  89 QKAFQMIINAEQKEIFD 105
                  57777777777777776 PP

>> PF12756.2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.3   9.5e+03      84      94 ..     116     126 ..     114     129 .. 0.82
   2 ?   -1.0   0.1       1.1   1.7e+03      54      80 ..     181     207 ..     157     227 .. 0.66
   3 !   16.6   0.0   3.8e-06    0.0058      51      75 ..     311     335 .]     290     335 .] 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6.3
    PF12756.2  84 eekkeiekfYd 94 
                  +++++++ fYd
  MMETSP0890-20130614|36520_1 116 SDWDQVKAFYD 126
                  57899999*98 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.1
    PF12756.2  54 lyCekefkslealreHmkkkgHckiny 80 
                   yC+k+   +++  +H+  ++  k + 
  MMETSP0890-20130614|36520_1 181 QYCRKRDPRVAQRIAHVAAEKEAKQKA 207
                  477777777777777776666555554 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 3.8e-06
    PF12756.2  51 leClyCekefkslealreHmkkkgH 75 
                  + C +C+k+fks ++l++H+++k H
  MMETSP0890-20130614|36520_1 311 FACNICKKTFKSEQQLENHLQSKAH 335
                  58**********************9 PP

>> PF11931.3  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   4.7   1.8e-05     0.027       4     127 ..     200     335 .]     166     335 .] 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-05
    PF11931.3   4 eykieklaellskelektienverkqalteeereke................eelekeassksesseeeseeeseeeseeeeekkiynplnlpLgadgkPiPyWLyklhgLdkeykCEiCgntsYkGrkaFekHFseerH 127
                  e++ ++ a+ll+k+ ++++ +  r++ ++eee   +                +++ ++++++ + ++++s e  +++s++++  + +  ++  L+ d    P  +  l   d+ + C+iC  +++k  ++ e+H +++ H
  MMETSP0890-20130614|36520_1 200 EKEAKQKAALLAKSKQRAQLFEARQKWRQEEED-PSfyqvrtgalladldddNDTGRRKKKAGKPKKKSSPE--DDDSNDDQTPDSQSVQDNNLADDKATTPDPVANLTTEDVIFACNICK-KTFKSEQQLENHLQSKAH 335
                  444555555666655555444444444433333.33688999999987654333333333333333333333..333333333444444677789999999999****************5.6899*********99988 PP

>> PF13912.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   3.5e-05     0.054       1      23 [.     310     332 ..     310     334 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.5e-05
    PF13912.1   1 vhtCgrCgktFsslqaLggHKks 23 
                  ++ C +C+ktF s q L  H +s
  MMETSP0890-20130614|36520_1 310 IFACNICKKTFKSEQQLENHLQS 332
                  577**************999876 PP

>> PF04988.7  A-kinase anchoring protein 95 (AKAP95)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.84   1.3e+03      44      64 ..     179     199 ..     143     224 .. 0.52
   2 ?   11.6   1.1   0.00011      0.16       1      25 [.     311     335 .]     311     335 .] 0.94

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.84
    PF04988.7  44 lqeylvnkvkkvesrrkqlee 64 
                  l +y +++  +v++r  ++ +
  MMETSP0890-20130614|36520_1 179 LAQYCRKRDPRVAQRIAHVAA 199
                  333333333333333333333 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00011
    PF04988.7   1 FtCslCkfrtfeekeiekHleskfH 25 
                  F+C +Ck   + e+++e+Hl+sk H
  MMETSP0890-20130614|36520_1 311 FACNICKKTFKSEQQLENHLQSKAH 335
                  99*****8888999*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1487  (0.108762); expected 273.4 (0.02)
Passed bias filter:                      575  (0.0420568); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.65
# Mc/sec: 1235.05
//
Query:       MMETSP0890-20130614|36521_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   43.9   0.0    2.6e-11   43.1   0.0    1.4  1  PF00450.17 Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> PF00450.17  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.9e-15   2.6e-11     265     363 ..      20     106 ..       3     116 .] 0.74

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.9e-15
                  ..-----SSTTHHHHHHHHCSCCHHHH--...--SSS--S--HHHHHT---TT.S-TCHHHHHHHHTT--EEEEE----STT-----HHHHCC--STTH CS
   PF00450.17 265 tdsqggldcysesavekylnreeVrkalhvnkaevkeweecndevfeqtgddvsksveeilekllesglrvliysGdvDlicnflgteawikklnlsgk 363
                  ++s     c s+  +++y+ r++V++alh++ ++ ++          + + ++ + +   +++ll++ +rvliy+Gd+Dl++++lg+e+w+ ++  sg 
  MMETSP0890-20130614|36521_1  20 YTSGYAWNCESDPVLDAYFTRDDVQEALHLD-GSGSR----------FSYSESGPASVLLYPELLKR-MRVLIYNGDADLCVPYLGNEEWVTSMVTSGY 106
                  4455556677888899*************86.43222..........3445566778899*******.*************************766653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      210  (0.0153599); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 414.89
//
Query:       MMETSP0890-20130614|36529_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    9.6   6.3        1.9    9.2   2.6    2.5  3  PF13428.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.3   4.1e+03      15      27 ..     119     131 ..     112     137 .. 0.62
   2 ?    9.2   2.6   0.00014       1.9       6      41 ..     135     171 ..     129     172 .. 0.81
   3 ?   -1.8   0.0      0.48   6.6e+03      37      37 ..     199     199 ..     181     224 .. 0.57

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.3
    PF13428.1  15 GdpdeAiallrra 27 
                   +  +A+ +lr+a
  MMETSP0890-20130614|36529_1 119 KQRTAALHALRAA 131
                  5556666666666 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00014
    PF13428.1   6 al.arallalGdpdeAiallrralalaPddaealllL 41 
                  +l ++alla+Gd d+A+ ll+++ +++ d + a l++
  MMETSP0890-20130614|36529_1 135 DLvVQALLARGDQDAALTLLDDLGSDFQDAWSAALAY 171
                  44279******************88888887777665 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.48
    PF13428.1  37 a 37 
                  +
  MMETSP0890-20130614|36529_1 199 V 199
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       305  (0.0223084); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.80
# Mc/sec: 733.88
//
Query:       MMETSP0890-20130614|36525_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   13.8   0.3        1.8    8.3   0.1    2.7  2  PF11837.3 Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00013       1.8      27      57 ..       8      37 ..       2      54 .. 0.79
   2 ?    2.8   0.0    0.0067        92      45      92 ..     190     272 ..     150     287 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00013
    PF11837.3 27 rplkvllavlsslllllllvallvvskgqsp 57
                 r++ ++l++ls++ll+ll ++++  sk + +
  MMETSP0890-20130614|36525_1  8 RSVALILSILSGMLLILLTMSII-LSKAERE 37
                 68999******************.4444443 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0067
    PF11837.3  45 lvall........................vvskgqspdgdeaaessseespesaap...........vsRGvseGVSeKsnra 92 
                  lv l+                        + ++g++ d+d+  ++ +++++e +++           + R+   GVS  ++++
  MMETSP0890-20130614|36525_1 190 LVLLMglglvavdilcrrlfgpnlfrfdtNFEQGSHRDDDVIYRPGTRDVDEEEEQllqlvslkgrpSRRALRGGVSLGATKH 272
                  22222444566667777778888888888888888888888888888888888888888888888878888888888665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       822  (0.0601229); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.47s 00:00:01.06 Elapsed: 00:00:00.69
# Mc/sec: 1104.41
//
Query:       MMETSP0890-20130614|36562_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-24   84.7   0.0    9.9e-24   83.5   0.0    1.6  1  PF08241.7  Methyltransferase domain
      1e-21   76.9   0.0    1.5e-21   76.4   0.0    1.2  1  PF13847.1  Methyltransferase domain
    3.2e-18   65.8   0.0    4.7e-18   65.2   0.0    1.2  1  PF13489.1  Methyltransferase domain
    7.4e-15   55.1   0.0    1.1e-14   54.5   0.0    1.3  1  PF08242.7  Methyltransferase domain
    2.3e-14   53.8   0.0    3.6e-14   53.1   0.0    1.3  1  PF12847.2  Methyltransferase domain
    1.3e-12   47.2   0.7    1.6e-12   46.9   0.0    1.5  2  PF01209.13 ubiE/COQ5 methyltransferase family
    2.4e-12   46.9   0.0      5e-12   45.9   0.0    1.5  1  PF13649.1  Methyltransferase domain
    5.3e-12   45.2   0.0    6.4e-12   45.0   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
    4.4e-08   33.0   0.0    8.2e-08   32.1   0.0    1.4  1  PF13659.1  Methyltransferase domain
    9.5e-08   30.6   0.0    1.2e-07   30.3   0.0    1.1  1  PF03141.11 Putative S-adenosyl-L-methionine-dependent methyltransferase
    8.5e-06   25.1   0.0    2.1e-05   23.8   0.0    1.6  1  PF05175.9  Methyltransferase small domain
    2.1e-05   24.0   0.0    2.7e-05   23.6   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      5e-05   22.6   0.0    9.6e-05   21.7   0.0    1.4  1  PF07021.7  Methionine biosynthesis protein MetW
    0.00019   21.0   0.0    0.00044   19.8   0.0    1.6  1  PF05148.10 Hypothetical methyltransferase
    0.00046   19.7   0.0    0.00071   19.1   0.0    1.3  1  PF13679.1  Methyltransferase domain
    0.00053   19.2   0.0    0.00072   18.8   0.0    1.2  1  PF05891.7  AdoMet dependent proline di-methyltransferase
    0.00062   18.8   0.0     0.0011   18.0   0.0    1.4  1  PF03848.9  Tellurite resistance protein TehB
    0.00082   20.0   0.0     0.0018   18.9   0.0    1.5  1  PF13578.1  Methyltransferase domain
     0.0013   17.7   0.0        0.2   10.5   0.0    2.2  2  PF02390.12 Putative methyltransferase
  ------ inclusion threshold ------
      0.026   13.8   0.0       0.27   10.5   0.0    2.0  1  PF05724.6  Thiopurine S-methyltransferase (TPMT)
       0.03   13.1   0.0      0.041   12.6   0.0    1.3  1  PF05219.7  DREV methyltransferase
      0.041   13.2   0.0      0.067   12.5   0.0    1.2  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.047   12.7   0.0      0.056   12.4   0.0    1.1  1  PF03059.11 Nicotianamine synthase protein
      0.058   12.8   0.0       0.14   11.6   0.0    1.6  1  PF00107.21 Zinc-binding dehydrogenase
      0.072   12.9   0.0       0.32   10.8   0.0    1.8  1  PF01728.14 FtsJ-like methyltransferase
       0.11   12.4   0.1       0.18   11.6   0.0    1.3  1  PF02254.13 TrkA-N domain
       0.13   12.2   0.0        0.2   11.6   0.0    1.2  1  PF01488.15 Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   1.9e-26   9.9e-24       1      95 []      44     144 ..      44     144 .. 0.98

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 1.9e-26
    PF08241.7   1 LdvGcGtglllealaer...paarvtgvDlseemlatakerlkeegle...lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                  LdvGcG g  +++la+    ++ +vtg+ ls+e+ ++a++ ++e+++    ++v+da  + f+dnsfD+v+  e  eh++d +k+++e+ RvLkpgG+lvi
  MMETSP0890-20130614|36562_1  44 LDVGCGIGGTSRYLASTlaeKGVQVTGITLSQEQAERATKIAAERNIGnceFKVMDALAMTFPDNSFDIVWGCESGEHMPDKKKYIEEMTRVLKPGGKLVI 144
                  8*****************************************9999999**************************************************97 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   2.9e-24   1.5e-21       4     125 ..      40     161 ..      39     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 2.9e-24
    PF13847.1   4 gikvlDlGCGtGylllelae.elgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelp.eeleels 125
                  + k+lD+GCG G  ++ la+ ++ +g +v+Gi  s+e+ e+A+++a++  + n+eF + d+ ++   ++ +sfD+v   e  ++++d++k ++e+ rvlkpgg+l++++ + ++++  +  ++++
  MMETSP0890-20130614|36562_1  40 NAKILDVGCGIGGTSRYLAStLAEKGVQVTGITLSQEQAERATKIAAERNIGNCEFKVMDALAMT--FPdNSFDIVWGCESGEHMPDKKKYIEEMTRVLKPGGKLVIATWC-QRDNStQPFTDEE 161
                  569*****************65556999*************************************..**********99999*************************9998.3333334444433 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   9.3e-21   4.7e-18      23     152 ..      40     187 ..      14     190 .. 0.81

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 9.3e-21
    PF13489.1  23 ggrvLDiGcGtGillell....aengfdvtgvDpspaaigk.........akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnas.....lasdeafakwdylvprgthisffsaeslkell 152
                  ++++LD+GcG G  +++l    ae+g +vtg+ +s ++ ++         + + +++++d+ + ++p+++fd++   e+ eh+pd +++++++ + lkpgG l++ t++ +     ++ de+   +d+l  + th +f+s +++++++
  MMETSP0890-20130614|36562_1  40 NAKILDVGCGIGGTSRYLastlAEKGVQVTGITLSQEQAERatkiaaernIGNCEFKVMDALAMTFPDNSFDIVWGCESGEHMPDKKKYIEEMTRVLKPGGKLVIATWCQRdnstqPFTDEEVRALDFLYSEWTHPYFISIHDYANIM 187
                  579**********999998878889**********9999999999986663344444443444567*****************************************99994445444444444477777766**********99987 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.2e-17   1.1e-14       1      99 []      44     142 ..      44     142 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 2.2e-17
    PF08242.7   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg.ssfDvvvasnvlhhlkdirevldnirklLkpgGvl 99 
                  L++GcG G ++r+l+  l  +++++tg+ +s+++  +++ k+a+++  n+ n+++++ d+l    + +sfD+v+ ++  +h++d++++++++ ++LkpgG+l
  MMETSP0890-20130614|36562_1  44 LDVGCGIGGTSRYLASTLaeKGVQVTGITLSQEQA-ERATKIAAER--NIGNCEFKVMDALAMTFPdNSFDIVWGCESGEHMPDKKKYIEEMTRVLKPGGKL 142
                  8*****************999**************.6667777766..46677777777776666679********************************97 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   7.2e-17   3.6e-14       2     111 ..      40     146 ..      40     147 .. 0.91

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 7.2e-17
    PF12847.2   2 gkrilDlGcGtGslslelar..lrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller.fDavllkgltldallaldeprrvlealpkllkpggrlvies 111
                  +++ilD+GcG G  s +la+  +++g +v+g+ +s+e +e+a + a ++++  ++e++  da  + ++ ++ fD+v   +   +   +++++++++e++ + lkpgg lvi +
  MMETSP0890-20130614|36562_1  40 NAKILDVGCGIGGTSRYLAStlAEKGVQVTGITLSQEQAERATKIA-AERNIGNCEFKVMDA-LAMTFPDNsFDIVWGCE---S-GEHMPDKKKYIEEMTRVLKPGGKLVIAT 146
                  579******************999**********************.77777**********.888888889***99844...3.566699*******************976 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   3.2e-15   1.6e-12      49     154 ..      41     147 ..      21     163 .. 0.91
   2 ?   -3.3   0.2         7   3.6e+03      24      39 ..     191     206 ..     176     210 .. 0.72

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 3.2e-15
   PF01209.13  49 akvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                  ak+lDv +G g  +  l++++ ekg +v+++ ++++  + + k + e+   n ef + +a ++ f d+sfD+v        ++Dk+k ++e+ rvlkpGG+lv+   
  MMETSP0890-20130614|36562_1  41 AKILDVGCGIGGTSRYLASTLAEKGvQVTGITLSQEQAERATKIAAERNIGNCEFKVMDALAMTFPDNSFDIVWGCESGEHMPDKKKYIEEMTRVLKPGGKLVIATW 147
                  69***************9999888879********************************************9987777789*********************98655 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7
   PF01209.13  24 ndvlslgihrlWkkfv 39 
                   +++s++  + Wk+ +
  MMETSP0890-20130614|36562_1 191 KQLISIHTEDWWKNTI 206
                  4689999999999876 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   9.9e-15     5e-12       1     101 []      43     140 ..      43     140 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 9.9e-15
    PF13649.1   1 ildlGCGsGrviraltral.dkgpeqrvigvDiseealelakerlsskgl.kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  ild+GCG G + r l+  l +kg   +v+g+ +s+e+ e a + ++++++ + +f ++da a+ f++++fd+v    +  eh   ++ ++ +ee+ rvlkpgG
  MMETSP0890-20130614|36562_1  43 ILDVGCGIGGTSRYLASTLaEKG--VQVTGITLSQEQAERATKIAAERNIgNCEFKVMDALAMTFPDNSFDIVWGCES-GEHM--PDKKKYIEEMTRVLKPGG 140
                  8*****************98888..9****************999999999**********************88444.6675..566789***********9 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.3e-14   6.4e-12      64     181 ..      41     161 ..      13     211 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 1.3e-14
                  -EEEE-------HHHHHH...HHH--EEE--BS-HHHHHHHHHHHHCS-SSS.-B---B---TT---.--SEEEE---GGGT--TCHHHHHHHHHHCS-----EEEEEEE---HHHHCC---- CS
   PF02353.15  64 mtlLdiGcGWGslvrrav...erydvkvvglTlSkeqaklakqrvdeldler.kvevklldyedlde.kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglk 181
                   ++Ld+GcG G++ r+ +   ++ +v+v g+TlS+eqa++a +  +e+++ + + +v  +    +++  +d v   +  eh+  +  ++++++++++lk++G l++ t  +++++++  +  +
  MMETSP0890-20130614|36562_1  41 AKILDVGCGIGGTSRYLAstlAEKGVQVTGITLSQEQAERATKIAAERNIGNcEFKVMDALAMTFPDnSFDIVWGCESGEHMPDK--KKYIEEMTRVLKPGGKLVIATWCQRDNSTQPFTDEE 161
                  589*********9998652224569*****************999988765413344444445555559************9877..59*******************999999887765544 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.6e-10   8.2e-08       3     116 ..      42     147 ..      40     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.6e-10
    PF13659.1   3 rvldpgcGsGtfllaalell...aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvlivp 116
                  ++ld+gcG G +  +++  l     +++g+ l+ + a+ a + +a+ ++ +++++ + d+++++  ++++sfd+v +    g++++++       +  +e++ r+lkpgG lv+ ++
  MMETSP0890-20130614|36562_1  42 KILDVGCGIGGTSRYLASTLaekGVQVTGITLSQEQAERATKIAAERNI-GNCEFKVMDALAMT--FPDNSFDIVWG-CESGEHMPDK-------KKYIEEMTRVLKPGGKLVIATW 147
                  89***************9977888*****************99999999.8*************..***********.4445555544.......4579*************99887 PP

>> PF03141.11  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   2.4e-10   1.2e-07     120     221 ..      42     148 ..      13     173 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 2.4e-10
   PF03141.11 120 tvlDvGcgvas....fgayLlsrdvltlslap.kdeheaqvqfALERgvpav.lavlgtkrlpyPsraFdlahCsrClipwteedgilllevdRvlRpgGyfvlsapp 221
                  ++lDvGcg +      +++L +++v    ++  +++ e   ++A ER +  +   v+ +  +++P ++Fd++        +  ++ +++ e+ Rvl+pgG +v+++  
  MMETSP0890-20130614|36562_1  42 KILDVGCGIGGtsryLASTLAEKGVQVTGITLsQEQAERATKIAAERNIGNCeFKVMDALAMTFPDNSFDIVWGCESGE-HMPDKKKYIEEMTRVLKPGGKLVIATWC 148
                  68*****7654113346678899998888887366778889********865389****************98655543.4445589*************99998754 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.2e-08   2.1e-05      31     141 ..      39     146 ..      32     167 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.2e-08
                  ------B-------HHHHHHHH-TT--..--EEESBH.HHHHHHHHHHHH----.--EEE-STTTT--..--BS-EEE--------HHHHHHHHHHH---GGGB-----EEEEEE CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespele..vtlvDina.rAvesakanleanklenvevlasdlleeve.ekkfdlivsNPPfhagkatelevaerliaeAkkhLkegGeLllVan 141
                   + k+lD+GcG+G  +  la+   e    vt +  ++ +A +++k  +e+n   n+e+   d+l+ +  +++fd++       +g++  +   ++ i+e  ++Lk+gG+L ++a+
  MMETSP0890-20130614|36562_1  39 FNAKILDVGCGIGGTSRYLASTLAEKGvqVTGITLSQeQAERATKIAAERNI-GNCEFKVMDALAMTFpDNSFDIVWG---CESGEH--MPDKKKYIEEMTRVLKPGGKL-VIAT 146
                  5789*********777776666555441144444444045555555555555.55*******9998876899997753...344444..455688999999999999999.5555 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.4e-08   2.7e-05      71     173 ..      37     146 ..      17     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5.4e-08
                  --TT-EEEEE------HHHHHHTTSSEEE....EE-SB---HHHHHHHHHHTT--SEEEE--------GGG--BSEEEESSB-SS--......HHHHHTB-----EEEEE CS
   PF01135.14  71 lkkgarvLevGsGsGyltavlarlvgekg.rvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaapeiP......ealidQLkeGGrlvvPv 173
                  +   a++L+vG+G G  +  la  + ekg +v +i  ++e +e+a++   + ++ n  ++v D      +   +d ++   + +++P      e++++ Lk+GG+lv+  
  MMETSP0890-20130614|36562_1  37 IPFNAKILDVGCGIGGTSRYLASTLAEKGvQVTGITLSQEQAERATKIAAERNIGNCEFKVMDALAMTFPDNSFDIVWGCESGEHMPdkkkyiEEMTRVLKPGGKLVIAT 146
                  56689******************9999996899*******************************877777778*************9554444467889********964 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-07   9.6e-05       9     101 ..      35     135 ..      32     148 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.9e-07
    PF07021.7   9 elikpgsrvldlGcGdGellellke...ekqvdgrGleldeegvaecva....kGlsviqgdldkdl.enfedksfdyvvlsqtlqatrnpkevldellri 101
                  + i+ ++++ld+GcG G   ++l+    ek+v+  G+ l++e   ++++    + +   +  + + l  +f+d+sfd+v    +   + + k+ ++e+ r+
  MMETSP0890-20130614|36562_1  35 NEIPFNAKILDVGCGIGGTSRYLAStlaEKGVQVTGITLSQEQAERATKiaaeRNIGNCEFKVMDALaMTFPDNSFDIVWGCESGEHMPDKKKYIEEMTRV 135
                  5688899********997666655322269*******999988877664111156655665555555257*********9888888888888888888887 PP

>> PF05148.10  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.6e-07   0.00044     111     178 ..      98     167 ..      32     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.6e-07
   PF05148.10 111 cdlakvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllkvaevksrfesvklfa.raltklGf 178
                   d   +   d+s d++  c s     + +++++e+ rvlk+GG l +a    r +s + f+ +++  l f
  MMETSP0890-20130614|36562_1  98 MDALAMTFPDNSFDIVWGCESGeHMPDKKKYIEEMTRVLKPGGKLVIATWCQRDNSTQPFTdEEVRALDF 167
                  344556678**********99524468899*******************999999999886245666665 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-06   0.00071      27      88 ..      41      97 ..      19     120 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.4e-06
    PF13679.1 27 ltvvDvGaGkgYLafvlasylkekeyklkvvgidvkeelvekaeelaeklgkkfnkslsfae 88
                  +++DvG+G g  ++ las l+ek  +++v+gi +++e +e+a+++a++ +  +  +++f+ 
  MMETSP0890-20130614|36562_1 41 AKILDVGCGIGGTSRYLASTLAEK--GVQVTGITLSQEQAERATKIAAERN--I-GNCEFKV 97
                 689********9999999866655..6********************9988..5.6666655 PP

>> PF05891.7  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-06   0.00072      56     162 ..      40     147 ..      16     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.4e-06
    PF05891.7  56 vkvaldcGaGiGrvtknlLlkllsk.vDlvepv..ekflekakeelaeekkkvgkvyvvglqeftPeegrYdliWiqWcvghLtDedlvaflkrckkalkpnGlivvken 162
                  +  +ld+G+GiG  ++ l  +l++k v +   +  ++  e+a++  ae +   +++ v+     t  ++++d++W      h++D++  ++++  ++ lkp+G +v+   
  MMETSP0890-20130614|36562_1  40 NAKILDVGCGIGGTSRYLASTLAEKgVQVTGITlsQEQAERATKIAAERNIGNCEFKVMDALAMTFPDNSFDIVWGCESGEHMPDKK--KYIEEMTRVLKPGGKLVIATW 147
                  5679*********9999988888663444443211444555554445555667778888888888889*****************98..899*************99654 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.2e-06    0.0011       6     128 ..      13     141 ..      10     177 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.2e-06
                  TTHHHHHHT-----HHH..HHHTTTS----EEE-------HHHHHH....H----EEEEES-HHHHHHHHHHHHHTT-T.EEEEE--GGG---.---BSEEEEES-GGGS-GGG----HHHHHHTB----- CS
    PF03848.9   6 edyfakkynltavhsev..leavkvvkpgkaldlGcGqGrnslfls....llgydvtavdkneasiailqeiaekenld.lkaalydinaasl.deeydfilstvvlmflqaeripeiianmqektkvGGy 128
                  +d+ + kyn t+   e   l+  ++  ++k+ld+GcG G  s +l+     +g +vt +  +++  +   +ia++ n+   + +++d  a+++ d+++d +        +  +   + i++m +  k+GG 
  MMETSP0890-20130614|36562_1  13 KDFKEAKYNFTQRMMEFggLSLNEIPFNAKILDVGCGIGGTSRYLAstlaEKGVQVTGITLSQEQAERATKIAAERNIGnCEFKVMDALAMTFpDNSFDIVWGCESGEHMPDK--KKYIEEMTRVLKPGGK 141
                  7899999999998888733556677789****************86222257999**99999999999999999888866888888888887734557766555444333333..3566677777777764 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.6e-06    0.0018       2     102 ..      45     143 ..      44     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.6e-06
    PF13578.1   2 EiGvysGvstlvllqalkrngagrlysvdpdpgaeeaaalaeeagladrvrllkgdseeala.sladgsiDllf.iDgghaaeavladleallprlapggvvl 102
                   +G+  G ++++l+++l ++g  +++++   +   e+a+ a +   ++++   + +  +ala +++d s+D+++ + +g +  + ++++e++ ++l+pgg ++
  MMETSP0890-20130614|36562_1  45 DVGCGIGGTSRYLASTLAEKGV-QVTGITLSQ---EQAERATKIAAERNIGNCEFKVMDALAmTFPDNSFDIVWgCESGEHMPDKKKYIEEMTRVLKPGGKLV 143
                  57888****************7.9*****999...555555554555566666666666666588899******889998999****************9877 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00039       0.2      22      81 ..      42     103 ..      11     113 .. 0.79
   2 ?    5.2   0.0     0.017       8.4     115     135 ..     126     146 ..     124     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00039
                  EEEE--------HHHHHHH-TTS..EEE---S-HHHHHHHHHHHHHH--TTB------HHHH CS
   PF02390.12  22 lvleIGfGsGdflvalAkknPdk..lflGiEirqkvvekvlkkiealglkNlrilegdaekv 81 
                   +l++G+G G+    lA   ++k  ++ Gi  +q+  e++ k ++++++ N +   +da  +
  MMETSP0890-20130614|36562_1  42 KILDVGCGIGGTSRYLASTLAEKgvQVTGITLSQEQAERATKIAAERNIGNCEFKVMDALAM 103
                  789********99999987776533899***********************99888777653 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.017
                  TTHHHHHHHHB-----EEEEE CS
   PF02390.12 115 pellkelarvLkkgGvlelaT 135
                  ++ ++e+ rvLk+gG l +aT
  MMETSP0890-20130614|36562_1 126 KKYIEEMTRVLKPGGKLVIAT 146
                  67899**************99 PP

>> PF05724.6  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00053      0.27      52     178 ..      58     165 ..      22     204 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00053
                  HHHH-BTTBEEE---S-HHHHHHHHHH----CCCCCB---EEEE.......B.-TTTSTTTT-..ECEEEEESSCCCS-HHHHHHHHHHHHHHC-SEEE.EEEEECS-SSS---------HHHHHHC CS
    PF05724.6  52 lvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvkeysageiellcgdvFtlraeelgkfdliydraalvAlppelreryakslaelLkpdgeglLvtldypqaeheGPPfsvpeaeleal 178
                  ++ lAe+g +v G+ ls+   e++          +++++ ++   g+ e    d+ +++  +  +fd+++       +p   +++y ++++++Lkp+g+  Lv     q +++  Pf+  ++e++al
  MMETSP0890-20130614|36562_1  58 ASTLAEKGVQVTGITLSQEQAERA----------TKIAAERN--IGNCEFKVMDALAMTFPDN-SFDIVWGCESGEHMPD--KKKYIEEMTRVLKPGGK--LVIATWCQRDNSTQPFT--DEEVRAL 165
                  456788888888888887665553..........33333333..3333333345555554444.4688887776666664..689**************..77777777777778887..5555554 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.1e-05     0.041      79     187 ..      24     145 ..      15     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.1e-05
    PF05219.7  79 rkllaiekespasdqedkklldlGaGdGeitkrvaptfee............vyatelsetm..rdrlkkkkynvlsalelqetdvkldlilclnlldrcfdplklledirsalepngrviva 187
                  ++++  ++ s +    + k+ld+G G G  ++ +a+t+ e               +e ++++    ++   +++v+ al +   d  +d++   +  + + d  k +e++  +l+p g+ ++a
  MMETSP0890-20130614|36562_1  24 QRMMEFGGLSLNEIPFNAKILDVGCGIGGTSRYLASTLAEkgvqvtgitlsqE-QAERATKIaaERNIGNCEFKVMDALAMTFPDNSFDIVWGCESGEHMPDKKKYIEEMTRVLKPGGKLVIA 145
                  678888888888888899********************999*99666544321.112222221123456678********9999***********************************9998 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00013     0.067       5      41 ..      49      86 ..      47     113 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00013
                 -----------HHHHHHH-EEEE----.HHHHHH---- CS
   PF02558.11  5 GaGaiGsllaakLakagadvtlilrsr.rlealkkngl 41
                 G G+ +++la +La++g +vt i+ s+ ++e+  k   
  MMETSP0890-20130614|36562_1 49 GIGGTSRYLASTLAEKGVQVTGITLSQeQAERATKIAA 86
                 99************************977776554444 PP

>> PF03059.11  Nicotianamine synthase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.056     153     230 ..      71     145 ..      20     175 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00011
   PF03059.11 153 lDknglandkasklvsadedlssrmsfhtadvldvteelkaydvvflAAlvGmakeeKakvlehlakkmakGallvlr 230
                  +    +  ++a+k+ + +++++ + +f+ +d+l +t   +++d+v+     G +  +K+k +e++++++++G  lv+ 
  MMETSP0890-20130614|36562_1  71 ITLSQEQAERATKIAA-ERNIG-NCEFKVMDALAMTFPDNSFDIVW-GCESGEHMPDKKKYIEEMTRVLKPGGKLVIA 145
                  4444455555555444.56665.4689999999999999******9.6789***********************9974 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00027      0.14      13      88 ..      64     145 ..      49     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00027
                  H--EEEEEESSHHHHHHHHH----EEEETTTS-HHHHHHHHTTT--BSEEEEET-.......CTHHHHHHHCB-----EEEC CS
   PF00107.21  13 lGarviavdsseeklelakelGadhvinskdedfvkaireltggkgvdvviecvg......agatfeqalkllapgGrvvvv 88 
                   G +v++++ s+e++e a ++ a++ i   ++++ +a+++ ++++ +d+v  c         ++ +e+ +++l+pgG++v+ 
  MMETSP0890-20130614|36562_1  64 KGVQVTGITLSQEQAERATKIAAERNIGNCEFKVMDALAMTFPDNSFDIVWGCESgehmpdKKKYIEEMTRVLKPGGKLVIA 145
                  5699**********************************************9986611111145579999*********9986 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00064      0.32      25     141 ..      41     148 ..      19     178 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00064
   PF01728.14  25 ktvvDlgaaPGgwsqvllqrl.geagkvvavDlqpmaplqgvttl..qgdi..tdpstqekilealeegerkvdlvlsDgapdvtgvhdldeyislqlilaalklalellkpggnfvlklfk 141
                  ++++D+g++ Gg s +l+  l +++ +v +++l +  + +++t++  + +i   + ++++ +  ++ +  + +d+v           ++ +++   +   ++++   ++lkpgg++v+ +++
  MMETSP0890-20130614|36562_1  41 AKILDVGCGIGGTSRYLASTLaEKGVQVTGITLSQE-QAERATKIaaERNIgnCEFKVMDALAMTFPD--NSFDIVWG--------CESGEHMPDKKKYIEEMT---RVLKPGGKLVIATWC 148
                  689*****************97778899*****965.8888888845455533333566666666655..46665542........222333333333333333...335666666666666 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00036      0.18       4      42 ..      48      86 ..      47     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00036
                 E---HHHHHHHCCCHH--..EEEEES-HHHHHHHHH--- CS
   PF02254.13  4 iGlGrvGrslaeeLregekdvvvidkdeerveelreegl 42
                 +G G + r la +L e++ +v++i  ++e++e++++  +
  MMETSP0890-20130614|36562_1 48 CGIGGTSRYLASTLAEKGVQVTGITLSQEQAERATKIAA 86
                 9***************6657*************987665 PP

>> PF01488.15  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0004       0.2      19      99 ..      49     133 ..      39     144 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0004
                  ----HHHHHGGG--TT..T-E.EEE----HHHHHHHHHHH.....T-EE---S-HHHHHHT-SEEEE-S--SS-SB-GGG----- CS
   PF01488.15  19 GAGemarlvakhLlek..gvkkiviaNRtaekakeLaeel..ggeevealpleeleellaeadvvisatsapepiiekeaveeak 99 
                  G G+++r +a++L+ek  +v+ i++    ae+a ++a+e   g+ e++++    +    + +d+v ++ s ++   +k+ +ee+ 
  MMETSP0890-20130614|36562_1  49 GIGGTSRYLASTLAEKgvQVTGITLSQEQAERATKIAAERniGNCEFKVMDALAMTFPDNSFDIVWGCESGEHMPDKKKYIEEMT 133
                  779*************5556789999************994444444444444444567899****9999999888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      474  (0.0346694); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.67u 0.42s 00:00:01.09 Elapsed: 00:00:00.72
# Mc/sec: 881.99
//
Query:       MMETSP0890-20130614|36576_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   13.1   0.1      0.076   13.1   0.1    1.2  1  PF08232.7 Striatin family
      0.089   12.5   0.5       0.13   12.0   0.4    1.3  1  PF06698.6 Protein of unknown function (DUF1192)
       0.12   12.2   0.1       0.12   12.2   0.1    1.0  1  PF09849.4 Uncharacterized protein conserved in bacteria (DUF2076)


Domain annotation for each model (and alignments):
>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.7e-05     0.076      29      46 ..       2      19 ..       1      50 [. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.7e-05
    PF08232.7 29 EmkarIakLeGerrglen 46
                 E++arIa Le+e ++ ++
  MMETSP0890-20130614|36576_1  2 ELQARIAALESELKKEKE 19
                 99*********9996543 PP

>> PF06698.6  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   2.8e-05      0.13      25      45 ..       2      22 ..       1      27 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.8e-05
    PF06698.6 25 ELeeRIalLqaEIaRleaala 45
                 EL++RIa+L++E +  +++ a
  MMETSP0890-20130614|36576_1  2 ELQARIAALESELKKEKEQSA 22
                 9***********998777665 PP

>> PF09849.4  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.7e-05      0.12      58     101 ..       1      43 [.       1      64 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.7e-05
    PF09849.4  58 kqlnarieeLeaqlqqaekqseessggFlsslfGgsqkrpaasq 101
                  k+l+ari++Le++l+++++q ++ + g + ++  ++++ ++as+
  MMETSP0890-20130614|36576_1   1 KELQARIAALESELKKEKEQ-SAIKPGAMLRMISNGSSVTKASS 43 
                  789**********9886555.56688888888777766544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 259.61
//
Query:       MMETSP0890-20130614|36574_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.4   0.4      0.079   12.5   0.3    1.4  1  PF00130.17 Phorbol esters/diacylglycerol binding domain (C1 domain)
       0.79    9.1   2.6         12    5.3   0.9    2.8  3  PF03604.8  DNA directed RNA polymerase, 7 kDa subunit


Domain annotation for each model (and alignments):
>> PF00130.17  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.2e-05     0.079      10      36 ..     124     157 ..     118     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
                  S--B-TTT-SB-......--.------EETTT-- CS
   PF00130.17  10 qptfCkhCgkfl......wg.kgkqglkCswCql 36 
                  ++++C+ Cg  +      ++ ++k gl+C +C+ 
  MMETSP0890-20130614|36574_1 124 KTMHCDDCGFTIyvaknrFKlHFKDGLRCLNCGA 157
                  6889*************9888***********86 PP

>> PF03604.8  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.013        87      19      27 ..     127     135 ..     122     141 .. 0.76
   2 ?    5.3   0.9    0.0018        12       9      24 ..     141     156 ..     127     157 .. 0.72
   3 ?   -2.4   0.0      0.45   3.1e+03      11      18 ..     349     356 ..     346     356 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.013
    PF03604.8  19 rCkeCGfRi 27 
                   C +CGf i
  MMETSP0890-20130614|36574_1 127 HCDDCGFTI 135
                  699999977 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0018
    PF03604.8   9 evelkrgdpirCkeCG 24 
                  +++l  +d +rC +CG
  MMETSP0890-20130614|36574_1 141 RFKLHFKDGLRCLNCG 156
                  5568889999*****9 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.45
    PF03604.8  11 elkrgdpi 18 
                  ++k+gdp+
  MMETSP0890-20130614|36574_1 349 TIKPGDPV 356
                  69****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       598  (0.043739); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.72
# Mc/sec: 1228.13
//
Query:       MMETSP0890-20130614|36582_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-22   78.5   0.0      5e-22   78.2   0.0    1.1  1  PF05346.6 Eukaryotic membrane protein family


Domain annotation for each model (and alignments):
>> PF05346.6  Eukaryotic membrane protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.7e-26     5e-22     189     323 ..      22     152 ..       4     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.7e-26
    PF05346.6 189 svlspllvvlgsEvlvDwiKhayilkfNkikpevyrrfldvllkdvllsrslnektvlsfsqkltrrlglvllplvvlivrvlvqivskllasklnvlalistivlalliflvllllKlllsilllkyaiskkkr 323
                  +++++ ++v g+E++ Dw+Kha+++kfNk+++++y+ + d l++dv++ r       l++++ +trrlgl +lpl ++  r l  ++  l+   +  l+ +   +l ll flv l lK+l+s+ll  ++i++++r
  MMETSP0890-20130614|36582_1  22 AITGQAIIVAGFEIIADWLKHAFMAKFNKLDARIYDAYADRLARDVVTGRGGG--IALDHTHAVTRRLGLAVLPLTCVAHRYLSIALAWLKL--SLELSDFALASLCLLGFLVTLELKVLTSVLLAGVSIERHAR 152
                  78999******************************************777774..899*********************9999866666643..4678999999***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:01.27
# Mc/sec: 554.75
//
Query:       MMETSP0890-20130614|36580_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:01.18
# Mc/sec: 1003.22
//
Query:       MMETSP0890-20130614|36588_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   96.2   0.0    1.4e-27   96.0   0.0    1.0  1  PF00171.17 Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0     1e-31   1.4e-27     347     462 .]       2     119 ..       1     119 [. 0.98

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 1e-31
                  ETTEEEEEEEES--TTSGGGTS---SSEEEEEEESSHHHHHHHHHSSSB---EEEE-SBHHHHHHHHHHS----EEESS-TT--TTTS-B---TTTEE-..-BSSHHHHHHTEEEEEE CS
   PF00171.17 347 kgyfvePtvladvtpdmriaqeEiFGPVlsvikfkdeeeaielaNdteyGLaaavftedleraervaerleaGnvwiNdsstgdaealpfgGvkqSglG..reggkegleeytevktv 462
                   g+f+ Ptvl++v++d++ + +E+F+PVls++++++++eai+l+N+++ G   a+ft++ + a+ + +++++G+v iN +  +  + ++f+G ++S  G  ++ gk+g+++yt++kt+
  MMETSP0890-20130614|36588_1   2 SGNFLGPTVLSQVSTDSPAYLHELFAPVLSCTCVETLDEAIALVNANPTGNGTAIFTNSGASARLFQREIDVGQVGINVPIPVPLPFFSFTGSRASIRGdlHFYGKQGVTFYTQTKTI 119
                  699*****************************************************************************9999999************9999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 639.03
//
Query:       MMETSP0890-20130614|36587_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00013   20.9   0.0    0.00035   19.5   0.0    1.6  1  PF00837.12 Iodothyronine deiodinase
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.053   13.5   0.0    1.8  2  PF13905.1  Thioredoxin-like
      0.061   12.8   0.0       0.13   11.8   0.0    1.5  1  PF00085.15 Thioredoxin
      0.067   12.6   0.0       0.12   11.7   0.0    1.4  1  PF08534.5  Redoxin
      0.089   12.7   0.0       0.18   11.7   0.0    1.5  1  PF13899.1  Thioredoxin-like


Domain annotation for each model (and alignments):
>> PF00837.12  Iodothyronine deiodinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00035      59     189 ..     103     251 ..      97     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.3e-07
   PF00837.12  59 kavwksqkldlfkqaklGgdaPnsevvrlsgqrs...........childfaqgerPlvlnfGsctCPpflarldafkrlveefssvadfllvyieeahps.......dGWaitdds..yeikkhqsledrlaaarllleraPgCrvvvdt 189
                  ++v+  +  + +kq++ G+ a   ++v++s+  +           +++ d  +  rP++l   ++ CP+ +a  ++ + ++ ++ ++    +    + hp        +G + +  s    + + ++le r++ a++++ + P+  +++d 
  MMETSP0890-20130614|36587_1 103 NCVLAKFGFEPYKQMEAGDAAIEFNLVKISSSLKlenfdtiknnrQRLSDLLKKGRPVLLCAVATSCPACMAFSSEMESFARDYPQILCVGITV-MQPHPEapeksfeNGTIWE-MSysRGVSQPRTLEGRIEIAQIIQRKLPSWLILADD 251
                  689999999********************99877799***********************9999999987766666666666666554433332.3334421111122343332.2212579999******************99999986 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.5   9.6e+03      36      52 ..     125     141 ..     114     148 .. 0.68
   2 ?   13.5   0.0   1.9e-05     0.053       1      44 [.     157     196 ..     156     248 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.5
    PF13905.1  36 kveivyVsldrdeeefk 52 
                  ++++v +s++ + e+f 
  MMETSP0890-20130614|36587_1 125 EFNLVKISSSLKLENFD 141
                  57888888887766654 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.9e-05
    PF13905.1   1 gkivllyfaaswcppckaftpelkelyeklkaskdkveivyVsl 44 
                  g++vll   a+ cp c+af +e++ + +++     ++  v + +
  MMETSP0890-20130614|36587_1 157 GRPVLLCAVATSCPACMAFSSEMESFARDYP----QILCVGITV 196
                  589***************************7....666666655 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.13      10      56 ..     150     194 ..     141     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
                  HHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEE CS
   PF00085.15  10 feeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakv 56 
                    + ++k  ++vl+  +A+ C  C a+++e+e++a ++  ++ ++ +
  MMETSP0890-20130614|36587_1 150 LSDLLKK-GRPVLLCAVATSCPACMAFSSEMESFARDYP-QILCVGI 194
                  4444555.99****************************9.6665554 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.5e-05      0.12      17      55 ..     144     183 ..     118     195 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.5e-05
                  T---EEHHH..HTTSEEEEE---------IIIIIHHHHTHH CS
    PF08534.5  17 dgktvslsd..fkgkkvvlvfvpgafcptCsaehpylekla 55 
                  +++   lsd   kg++v+l +v++  cp C+a   ++e +a
  MMETSP0890-20130614|36587_1 144 KNNRQRLSDllKKGRPVLLCAVAT-SCPACMAFSSEMESFA 183
                  5677788888889***********.*****98666666655 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05      0.18       7      40 ..     147     180 ..     141     198 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.6e-05
    PF13899.1   7 dealakareegkpllvifgadwcpdCqaldrdvl 40 
                   + l+ + ++g+p+l+   a+ cp C+a+  +++
  MMETSP0890-20130614|36587_1 147 RQRLSDLLKKGRPVLLCAVATSCPACMAFSSEME 180
                  57788999********************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       496  (0.0362785); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.79
# Mc/sec: 1013.14
//
Query:       MMETSP0890-20130614|36613_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   16.6   0.3      0.024   14.6   0.2    1.9  2  PF13499.1 EF-hand domain pair
  ------ inclusion threshold ------
      0.089   12.6   0.3       0.31   10.9   0.1    1.9  2  PF13405.1 EF-hand domain


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   1.3e+03      45      62 ..      29      45 ..      13      49 .. 0.66
   2 !   14.6   0.2   3.5e-06     0.024       3      33 ..      65      95 ..      31     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.19
    PF13499.1 45 ifkelDkngdGvlsfeEf 62
                 ++++lD+ g G ++++Ef
  MMETSP0890-20130614|36613_1 29 LIHRLDSHGRG-VDRAEF 45
                 57777877655.455555 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3.5e-06
    PF13499.1  3 keaFkllDkdgdgyldkeeLlrllkhlgsel 33
                 +++F++lD+ g+g l+ e++ ++++h++  +
  MMETSP0890-20130614|36613_1 65 FDRFDELDVTGNGILTTEDIANFANHFQATH 95
                 5679999999999999999999999988665 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.65   4.4e+03      17      26 ..      40      49 ..      31      54 .. 0.65
   2 ?   10.9   0.1   4.6e-05      0.31       4      25 ..      66      87 ..      64      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.65
                 B---HHHHHH CS
    PF13405.1 17 idaeELrdaL 26
                 +d++E++  +
  MMETSP0890-20130614|36613_1 40 VDRAEFVVGM 49
                 7888886543 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 4.6e-05
                 ---GCC-------B---HHHHH CS
    PF13405.1  4 eaFklfDkdgdGkidaeELrda 25
                 + F+ +D +g+G ++ e++ ++
  MMETSP0890-20130614|36613_1 66 DRFDELDVTGNGILTTEDIANF 87
                 67****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      302  (0.0220889); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.59
# Mc/sec: 779.83
//
Query:       MMETSP0890-20130614|36616_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.54
# Mc/sec: 785.47
//
Query:       MMETSP0890-20130614|36619_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   12.9   0.3      0.077   12.8   0.2    1.2  1  PF07862.6 Nitrogen fixation protein of unknown function


Domain annotation for each model (and alignments):
>> PF07862.6  Nitrogen fixation protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   5.7e-06     0.077      12      35 ..      26      52 ..      14      54 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.7e-06
    PF07862.6 12 kvq...sdpslreqlkacsdheevval 35
                 k+q   +d++l++q++ ++  ++v al
  MMETSP0890-20130614|36619_1 26 KAQrgeNDAELQAQIARAEQGDDVQAL 52
                 555566******************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 227.02
//
Query:       MMETSP0890-20130614|36630_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   16.9   0.0     0.0015   16.8   0.0    1.1  1  PF01411.14 tRNA synthetases class II (A)


Domain annotation for each model (and alignments):
>> PF01411.14  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-07    0.0015     465     505 ..      19      63 ..       2      71 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.1e-07
                  TT-.....----EEEEE....EETTEEEESEE-S----------- CS
   PF01411.14 465 kilallkdkefveevee....gqegvvvLdrtpfYaesGGqigDe 505
                   + +l+ d++f +e+e+     +e+ ++Ld++ f +++GGq  D 
  MMETSP0890-20130614|36630_1  19 GTKKLYLDNTFLHEIEAivvsATENELILDQSIFHPQGGGQPHDA 63 
                  44555556666555554211167888****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 257.26
//
Query:       MMETSP0890-20130614|36628_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-07   28.6   0.0    1.2e-06   28.2   0.0    1.2  1  PF13489.1 Methyltransferase domain
    0.00053   19.4   0.0     0.0011   18.4   0.0    1.7  1  PF13847.1 Methyltransferase domain
    0.00065   20.0   0.0     0.0014   18.9   0.0    1.6  1  PF08241.7 Methyltransferase domain
     0.0065   16.8   0.0      0.012   15.9   0.0    1.5  1  PF08242.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.5e-10   1.2e-06      82     160 ..       4      80 ..       1      82 [. 0.85

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.5e-10
    PF13489.1  82 livarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakwdylvprgthisffsaeslkelleeaGfeiv 160
                   +v+ ev++h  + + ll+ i ++lkpgG+l++++    + +de+++k    ++r+      +++ + ++l++aGf  v
  MMETSP0890-20130614|36628_1   4 HVVSCEVFCHAASKPDLLNGITNILKPGGVLVFTDIMGADGADEKALK--DFTDRNATTEMARPTGYLQQLKDAGFIHV 80 
                  58999******************************9877777777665..34555688999999***********9877 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.3e-07    0.0011      77     127 ..       5      58 ..       1     144 [. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.3e-07
    PF13847.1  77 visnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsk...l 127
                  v+s ev+++ a +++ l+ i + lkpgg+l+ +++ +++  +e++ ++ +   +
  MMETSP0890-20130614|36628_1   5 VVSCEVFCHAASKPDLLNGITNILKPGGVLVFTDIMGADGADEKALKDFTdrnA 58 
                  6777999*****************************888888777777664431 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.1e-07    0.0014      61      95 .]       2      36 ..       1      36 [. 0.95

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.1e-07
    PF08241.7 61 fDvvvssevlehledpekalkeiaRvLkpgGllvi 95
                 f  vvs ev++h ++  ++l+ i  +LkpgG+lv+
  MMETSP0890-20130614|36628_1  2 FTHVVSCEVFCHAASKPDLLNGITNILKPGGVLVF 36
                 6679*****************************97 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.5e-06     0.012      67      99 .]       2      34 ..       1      34 [. 0.94

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.5e-06
    PF08242.7 67 fDvvvasnvlhhlkdirevldnirklLkpgGvl 99
                 f  vv+++v+ h++ + ++l+ i + LkpgGvl
  MMETSP0890-20130614|36628_1  2 FTHVVSCEVFCHAASKPDLLNGITNILKPGGVL 34
                 5679***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 502.57
//
Query:       MMETSP0890-20130614|36627_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.5   0.0      0.056   12.9   0.0    1.2  1  PF13479.1  AAA domain
        2.7    7.4  27.3        5.1    6.5  18.9    1.5  1  PF04156.9  IncA protein
        4.9    4.7  10.6        6.3    4.3   7.4    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
        6.6    5.8  13.9        3.2    6.9   2.0    2.2  2  PF04642.7  Protein of unknown function, DUF601


Domain annotation for each model (and alignments):
>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.056      31     103 ..      44     114 ..      34     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
    PF13479.1  31 leagakavkdlkrgdsvdvrswqdlrealkeleedlaeydtlviDsitklerlilaeilkq.kekkskrtgkpd 103
                   + g + +++l + d+++v+ +qd+r+ l + +e ++e + l iD  ++le+++ ++++ + ++++s+r  +++
  MMETSP0890-20130614|36627_1  44 QDGG-ENTRSL-PRDAYEVAELQDCRQHLRLCAERISELEQLNIDLESRLEEQANEYVKLEsEAAESQR-RWKE 114
                  5666.788899.99*********************************************8866666665.4434 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  18.9    0.0015       5.1      81     190 ..      61     168 ..      25     202 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0015
    PF04156.9  81 eelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerl.qedlqrlqeklaelqrlleq 190
                  +el++++++l   +e +++le+ + +les+le++ +++ +l+   ++ +e+   ++e+++ l++e++  r++ s+l+ + q+lr +l r+ +e+   lq+k +  + ++++
  MMETSP0890-20130614|36627_1  61 AELQDCRQHLRLCAERISELEQLNIDLESRLEEQANEYVKLE---SEAAESQRRWKEQFEHLERECELWRNSNSQLELKNQQLRNQLLRTeKELHGILQKKYEFMELARQE 168
                  79****************************************...888888888999999999999999999999999999999999999777778888888888877775 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.4    0.0019       6.3      13     141 ..      64     186 ..      55     214 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0019
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXX CS
   PF01496.14  13 rDlnedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelssldeefkalraaegl 141
                  +D+ ++++       + +++l++++  l +  +e  ++  +l+ e ++++ + ++++e le+e e   +  +++e ++++L+++l+  e++ + + ++k ++ e +   ++e+++++ e++a  +++ +
  MMETSP0890-20130614|36627_1  64 QDCRQHLR----LCAERISELEQLNIDLESRLEEQANEYVKLESEAAESQRRWKEQFEHLERECELWRNSNSQLELKNQQLRNQLLRTEKELHGILQKKYEFMELA--RQEERERIKAEQDAQLRENNV 186
                  44444444....33445555555555565555555556666666666666666679*****************************999999888777777777754..555566666665554444444 PP

>> PF04642.7  Protein of unknown function, DUF601
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.0   0.00094       3.2     192     272 ..      43     120 ..      21     126 .. 0.70
   2 ?    4.6   2.3    0.0046        16     253     293 ..     136     176 ..     124     183 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00094
    PF04642.7 192 dkeiesfkrseeenaraverankvlsrmkeaearvqklevnnidlaaklesgknaylaaienenraraellaceeklkkle 272
                  d++  +  rs   +a  v   +   + ++    r+ +le  nidl ++le   n y++    e++a    +  +e++  le
  MMETSP0890-20130614|36627_1  43 DQDGGENTRSLPRDAYEVAELQDCRQHLRLCAERISELEQLNIDLESRLEEQANEYVKL---ESEAAESQRRWKEQFEHLE 120
                  555555555555566666666666778888899**********************9763...4444444555666666666 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0046
    PF04642.7 253 nenraraellaceeklkkleeeqaallaaarkeerrkvraq 293
                  ++++ r +ll  e  l+ + +++ + ++ ar+eer +++a+
  MMETSP0890-20130614|36627_1 136 KNQQLRNQLLRTEKELHGILQKKYEFMELARQEERERIKAE 176
                  567889*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1070  (0.0782621); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.80
# Mc/sec: 853.70
//
Query:       MMETSP0890-20130614|36638_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 281.92
//
Query:       MMETSP0890-20130614|36650_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   19.8   0.0     0.0012   18.5   0.0    1.6  1  PF07647.12 SAM domain (Sterile alpha motif)
    0.00061   19.8   0.0     0.0024   17.9   0.0    2.0  2  PF00536.25 SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.076   12.2   0.2        0.2   10.8   0.2    1.7  1  PF06031.8  SERTA motif


Domain annotation for each model (and alignments):
>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.7e-07    0.0012       5      58 ..      46      99 ..      45     103 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHHT--CCSHHHHHHHTS-SCTCC.CSSCHHHHHCCCHHCHHHHHHH CS
   PF07647.12  5 sledvaeWLrsiglkqYtenFrdqgitggell.lrlteedLkrlGitsvghrkki 58
                 s +d+a++L+si++++Y + ++ + i ++  l ++ +  dL++++i  vg+r++i
  MMETSP0890-20130614|36650_1 46 SHDDLASFLQSIRCEKYFDDLMAHDICSINELkMCASDIDLAEIDI-PVGPRRRI 99
                 689*************************99998888888999****.99999998 PP

>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.3e-07    0.0024       2      60 ..      44     103 ..      43     105 .. 0.87
   2 ?   -1.8   0.0      0.75   3.4e+03      25      49 ..     207     231 ..     198     236 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.3e-07
                  -TT-SSHHHHHHHTT-GGGHHHH.HCT--SHHHHTT--HHH.HHHH-------HHHHHHHH CS
   PF00536.25   2 ewsvedVgeWLesiglgqYvdnF.rageidgdallllteed.LeklgvtllGHrkkIlssI 60 
                  ++s +d++ +L+si++++Y d   ++   ++ +l+ + ++  L ++ +  +G+r +I +++
  MMETSP0890-20130614|36650_1  44 KNSHDDLASFLQSIRCEKYFDDLmAHDICSINELKMCASDIdLAEIDI-PVGPRRRIQYAL 103
                  57899******************777777********99974666***.55*******986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.75
                  HCT--SHHHHTT--HHHHHHH---- CS
   PF00536.25  25 rageidgdallllteedLeklgvtl 49 
                  r + i  ++++   e+dL+++ v+l
  MMETSP0890-20130614|36650_1 207 RLCVIKPQQVKDVPESDLRSVLVSL 231
                  5555666667777777777777765 PP

>> PF06031.8  SERTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   4.3e-05       0.2       3      30 ..     207     233 ..     207     235 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.3e-05
    PF06031.8   3 nLSldKLqrirdlsEpsLrRsVLInNTL 30 
                  +L++ K q ++d++E++L RsVL+  TL
  MMETSP0890-20130614|36650_1 207 RLCVIKPQQVKDVPESDL-RSVLVSLTL 233
                  69****************.6***97666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       928  (0.067876); expected 273.4 (0.02)
Passed bias filter:                      378  (0.0276477); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1181.99
//
Query:       MMETSP0890-20130614|36662_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   46.7   2.3      3e-12   45.9   1.6    1.4  1  PF00628.24 PHD-finger
  ------ inclusion threshold ------
       0.16   11.8   2.1       0.31   10.9   1.4    1.4  1  PF11793.3  FANCL C-terminal domain
          2    8.4   4.6        4.5    7.3   0.2    3.0  3  PF08273.7  Zinc-binding domain of primase-helicase


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   1.6   6.6e-16     3e-12       1      50 [.     490     539 ..     490     540 .. 0.95

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 6.6e-16
                  SBTTTTCTCTTS-EEEBS..SSSSEEETTTSSS-SSHHSHHSTTB-SCCCHC CS
   PF00628.24   1 rCkiCgesdeegelvlCd..gCkewfHlkClglkleseekpegewlCeeCke 50 
                  +C+iCg+ d  ++l+lCd  +Ck+  H++Cl+++l+  e+p+g+w+C +C+ 
  MMETSP0890-20130614|36662_1 490 ICSICGSGDLADTLLLCDgpNCKNGTHMACLNPPLD--EIPQGDWFCASCTA 539
                  6*****************777***************..9999********86 PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.4   6.8e-05      0.31       4      45 ..     490     528 ..     487     537 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.8e-05
                  S-SSS--SS--------B--S-TT----B-SGGGHHHHHHHH CS
    PF11793.3   4 eCgiCyayrldsgevpdisCdnekCnkkfHaaCLkeWlrslk 45 
                   C+iC +  l   + +   Cd ++C++  H aCL+  l +++
  MMETSP0890-20130614|36662_1 490 ICSICGSGDL---ADTLLLCDGPNCKNGTHMACLNPPLDEIP 528
                  5999999999...567899***************98777765 PP

>> PF08273.7  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.72   3.3e+03       8      30 ..     294     327 ..     294     329 .. 0.54
   2 ?    1.5   0.1     0.063   2.9e+02      26      38 ..     488     498 ..     479     501 .. 0.79
   3 ?    7.3   0.2   0.00099       4.5      24      33 ..     529     538 ..     510     545 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.72
                  --------EEE--................--EEBT CS
    PF08273.7   8 vCGgrDrfrifddkdgr............GtwfCr 30 
                  +CGg +    f   + +            G+ fC 
  MMETSP0890-20130614|36662_1 294 NCGGLTELL-FENLRAQapetlracaerlGSRFCQ 327
                  677766555.5554444444455555555677775 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.063
                  -EEBTTTTBE--- CS
    PF08273.7  26 twfCrsCegvgGd 38 
                  +++C+ C g +Gd
  MMETSP0890-20130614|36662_1 488 DTICSIC-G-SGD 498
                  6799999.6.566 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00099
                  .--EEBTTTT CS
    PF08273.7  24 rGtwfCrsCe 33 
                  +G+wfC sC 
  MMETSP0890-20130614|36662_1 529 QGDWFCASCT 538
                  4********3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.41s 00:00:01.32 Elapsed: 00:00:00.66
# Mc/sec: 2076.84
//
Query:       MMETSP0890-20130614|36664_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   13.4   0.0      0.059   12.4   0.0    1.4  1  PF13712.1 Glycosyltransferase like family


Domain annotation for each model (and alignments):
>> PF13712.1  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.3e-06     0.059      23     107 ..     102     190 ..      93     208 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.3e-06
                  ----TEEEEEEE----------HHHHHGGG----....EEEEEETTEE-S-HHHHHHHHHHHHH-TT--EE-----BSS-S-TTS---- CS
    PF13712.1  23 lavppgelieidnirnaksmasaYNealkrakyk....ylvfvHqDvflvnknfledllelfkkdeklgliGvaGskslpkngvwwegk 107
                  + + p+ l++++   ++ ++ s+   +l+r+  k    y+  +++D+ lv+k+++ +++  +++ +    +GvaG     ++ + +++ 
  MMETSP0890-20130614|36664_1 102 TNKSPYLLLKLFHFDDTLGAPSQAVSGLARTAIKdgadYIYQLNDDTILVSKDWVDEMIYDLRSSPLAPNLGVAGPLDTTNERILTHAF 190
                  555666666666666666666666666666433334558899***********************9999******99998888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.71
# Mc/sec: 1029.42
//
Query:       MMETSP0890-20130614|36666_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        9.2    5.3  13.3         12    4.9   9.2    1.2  1  PF07517.9  SecA DEAD-like domain


Domain annotation for each model (and alignments):
>> PF07517.9  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.2   0.00089        12       7      86 ..      48     132 ..      33     146 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00089
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF07517.9   7 skserelkklqkiveeineleeelkklsdeeLrekteelkerlkege.....sldellpeafavvreaakrtlgmrhydvQllgg 86 
                   +++++ ++  +  +++ne++++l++ s++  ++ t+e ++  k+++     +l +++p+ +a+ ++ ++ ++++ h  vQ+   
  MMETSP0890-20130614|36666_1  48 AQQQQQAQQQAQPKQSVNEQQSQLQAQSEQPAQQLTSEQQQAQKAQQlqlqqQLLRMTPQQLAAAQHQMQLQCQQMHIPVQMHPL 132
                  344555556666667888888888888887766666665555433322222266669************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3377  (0.247001); expected 273.4 (0.02)
Passed bias filter:                      725  (0.0530281); expected 273.4 (0.02)
Passed Vit filter:                       175  (0.0127999); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:01.40
# Mc/sec: 296.12
//
Query:       MMETSP0890-20130614|36665_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-34  117.8   0.0    3.9e-34  117.6   0.0    1.1  1  PF13087.1 AAA domain


Domain annotation for each model (and alignments):
>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   2.9e-38   3.9e-34      95     198 ..       2     101 ..       1     102 [. 0.93

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 2.9e-38
    PF13087.1  95 vvklvekllkkgeeesekkigvitpYraqvellkkklkekekekeekeievstvDgfQGrEkdviilslVRsnekkkvgflkderrlNVAlTRAkrkliivGnk 198
                  v   v++ll++g+    ++ig++tpY+aq + + ++l  +++++++  iev+tvDgfQGrEk+++++s+VR+n+++++gfl+d rrlNVA+TR +++li++G++
  MMETSP0890-20130614|36665_1   2 VSAAVQALLAAGATP--QDIGIVTPYAAQARAITQNLVANDSSANV--IEVGTVDGFQGREKNIMLISAVRANKDSELGFLADARRLNVAITRPRQALIVFGHP 101
                  567789999999999..9********************87777655..******************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 490.00
//
Query:       MMETSP0890-20130614|36670_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.30s 00:00:00.62 Elapsed: 00:00:00.57
# Mc/sec: 297.48
//
Query:       MMETSP0890-20130614|36671_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-20   72.3   0.1    4.8e-20   71.8   0.0    1.1  1  PF02230.11 Phospholipase/Carboxylesterase
    2.4e-08   33.7   0.0    4.9e-08   32.7   0.0    1.5  1  PF12695.2  Alpha/beta hydrolase family
    4.4e-07   29.9   0.2    0.00012   21.9   0.0    2.7  2  PF12697.2  Alpha/beta hydrolase family
    6.4e-05   22.3   0.0    0.00015   21.2   0.0    1.5  1  PF03959.8  Serine hydrolase (FSH1)
     0.0072   15.9   0.0     0.0098   15.5   0.0    1.2  1  PF01083.17 Cutinase
  ------ inclusion threshold ------
      0.025   12.7   0.0      0.034   12.2   0.0    1.1  1  PF10081.4  Predicted membrane protein (DUF2319)
      0.073   12.5   0.0      0.096   12.1   0.0    1.2  1  PF00561.15 alpha/beta hydrolase fold
       0.11   11.7   0.0        7.3    5.9   0.0    2.4  2  PF04083.11 Partial alpha/beta-hydrolase lipase region


Domain annotation for each model (and alignments):
>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   2.8e-23   4.8e-20      11     199 ..      12     210 ..       8     221 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 2.8e-23
   PF02230.11  11 kpaqavvIflHGlGdsg.hllaeaakleaallntk..fifphgpeepvtlnggmrmpaWfdlkelspnk....kedeagikksaekleelidaelkkgipssriiigGFSqGaa....lalylaltspk.plggivafsgalplnqkleqsatkva.kipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHs 199
                  ++a+ +++++HGlG++g +l  +a+++  +ll  k  fifp +pe +    ++m  ++   +++ +++     + + +gi +   + ee+i++ l+k  p  r ++gGFSqGa+    +al+ a+  ++ +  gi+ +sga +  + +++ ++k+  k  i  +Hg +D v+p++++  +++++++++ +v  +  +  gH 
  MMETSP0890-20130614|36671_1  12 ENAELIIVLMHGLGSNGdNLAPLAEAIGTRLLGKKaiFIFPTAPEGYWFPLNPMD-WMVTAMQNGQDSLarliRTEFNGIPQCRINGEEMIQYLLEKA-PHARLFLGGFSQGAMtstdIALHHAFHNQEsRFDGIIHLSGAPIDIEVWASRLQKISkKPRIYISHGRQDMVLPFFVSDWSNQIFTKAGCQVAYHPHP-EGHT 210
                  6677899**********99999999998888654433999****99999999995.666666655444344567788899999999999999999885.999************6666789999999998**************************7777999***********************99999999988.7776 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.8e-11   4.9e-08       2     117 ..      18     183 ..      17     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.8e-11
    PF12695.2   2 vvlvhGaggdssayeplae....alakrgfavvav.............dlpghgasegaaaakrvl.....................aadlldleriilvGhSlGGgvalelag......rddrvkglvllapfpd.....gedlakltl..pvllihGtrDgvvpp 117
                  +vl+hG g+++++++plae    +l  ++   + +             d+  +   +g++ ++r++                      + ++ + r++l+G+S+G+++++ +a       +++r++g++ l++ p       ++l+k+++   + + hG +D v+p+
  MMETSP0890-20130614|36671_1  18 IVLMHGLGSNGDNLAPLAEaigtRLLGKKAIFIFPtapegywfplnpmDWMVTAMQNGQDSLARLIrtefngipqcringeemiqylLE-KAPHARLFLGGFSQGAMTSTDIALhhafhnQESRFDGIIHLSGAPIdievwASRLQKISKkpRIYISHGRQDMVLPF 183
                  8******************5544444444444444777777666666655555555777777777788888888888888887766422.23789*******************99999666**********9643211123455555558899**********975 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.8e-08   0.00012       1     101 [.      18     151 ..      18     163 .. 0.73
   2 !    5.2   0.0    0.0089        15     169     216 ..     158     210 ..     153     215 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.8e-08
                  EEE------------HHHHHHT.....TTSEEEEE-----------S............S--HHHHHH..............HHHH.HHHH--.--EEEE--------HHHHHH----......EEEEEEE---- CS
    PF12697.2   1 vvllHGlggsaeswrplaeaLa.....agyrvvapDlpGhGrSdrppd.........ydpdtledlaa..............dlaa.lldalglrpvvlvGHSlGgavalaaaarrpd.....lvrglvlidppg 101
                  +vl+HGlg+++++ +plaea+      +    + p  p  G   ++++          ++d+l++l++              ++++ ll+++  ++++l G S+G+++++ +a ++       +++g++ ++ ++
  MMETSP0890-20130614|36671_1  18 IVLMHGLGSNGDNLAPLAEAIGtrllgKKAIFIFPTAPE-GYWFPLNPmdwmvtamqNGQDSLARLIRtefngipqcringeEMIQyLLEKAPHARLFLGGFSQGAMTSTDIALHHAFhnqesRFDGIIHLSGAP 151
                  8********************657776678888888883.333333333344444445566777776677777777777777555438899999*******************7643334566*****9888777 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0089
                  HHHHTT-..-S-EEEEE-----HHH...HHHHHHHHHHST.TEEEEE---SSSS CS
    PF12697.2 169 realarl..dvPvlviageaDrvvp...peearrlaealp.garvvvlpgagHl 216
                  +++l+++  +  +++ +g++D+v+p    ++  ++  +++ ++ ++ +p  gH 
  MMETSP0890-20130614|36671_1 158 ASRLQKIskKPRIYISHGRQDMVLPffvSDWSNQIFTKAGcQVAYHPHP-EGHT 210
                  5677777633447777***********9999999998776567777787.8886 PP

>> PF03959.8  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.5e-08   0.00015       7     202 ..      18     211 ..      12     219 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 8.5e-08
    PF03959.8   7 iLcLhGytqsgeiFraktsalrkllkklnvelvyldap....veleekadlpkseseeeekseeeeeyraWfrkkde..sneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkeakhpklkfailvsGfkleepkyeeyyeedkiqtpsLhv.lGelDtvvdeerseaLaeafkns...skvlkHpggHfv 202
                  i  +hG +++g+ ++   +a+   l  +++ +++++ap    ++l ++ d+  +   +   ++ ++   + +r++ +  ++  ++ ee ++++ +       f G  GFSqGa+ ++ +a l +  ++  ++ ++  +i +sG+ ++ +  ++   ++  + p +++ +G++D+v +   s    + f++       + Hp gH+v
  MMETSP0890-20130614|36671_1  18 IVLMHGLGSNGDNLAPLAEAIGTRLLGKKAIFIFPTAPegywFPL-NPMDWMVT---A--MQNGQDSLARLIRTEFNgiPQCRINGEEMIQYLLEKAPHARLFLG--GFSQGAMTSTDIA-LHHAFHN--QESRFDGIIHLSGAPIDIEVWASRL-QKISKKPRIYIsHGRQDMVLPFFVSDWSNQIFTKAgcqVAYHPHPEGHTV 211
                  778999999999999999999999888899999*99994443444.55555533...2..233334444444444434456666667777777776666666665..******9999998.3343444..7899************999988877.3333445554439******985444333333333343388889999**98 PP

>> PF01083.17  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.8e-06    0.0098      68      99 ..      98     130 ..      84     166 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.8e-06
                  HHHHHHHHHH-TTSEEEE---B---HH.HHHHH CS
   PF01083.17  68 arlvnsaaskCPntkivlgGYSqGaav.mdnai 99 
                  +++++ +++k P +++ lgG+SqGa   +d+a+
  MMETSP0890-20130614|36671_1  98 EEMIQYLLEKAPHARLFLGGFSQGAMTsTDIAL 130
                  679999******************965244454 PP

>> PF10081.4  Predicted membrane protein (DUF2319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05     0.034     347     399 ..     107     159 ..      96     169 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2e-05
    PF10081.4 347 tlpederPkLyvvGeSLGalgseaaf..dlledledkvdgal.wsGpPfaselwre 399
                  + p     +L++ G S Ga+ s + +  +++++ e+++dg++ +sG+P   e+w++
  MMETSP0890-20130614|36671_1 107 KAP---HARLFLGGFSQGAMTSTDIAlhHAFHNQESRFDGIIhLSGAPIDIEVWAS 159
                  333...448*************9877568999********98579****9999976 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.6e-05     0.096      32      78 ..      99     150 ..      97     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.6e-05
                  HHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGG.....GEEEEEEESB- CS
   PF00561.15  32 rdleavldalglkkltlvGhSmGGmialayaaeypd.....rvkamvllgtv 78 
                  ++++++l++ +  +l l G+S+G+m+++  a+ +       r++++++l+ +
  MMETSP0890-20130614|36671_1  99 EMIQYLLEKAPHARLFLGGFSQGAMTSTDIALHHAFhnqesRFDGIIHLSGA 150
                  789*************************999988655556788888866664 PP

>> PF04083.11  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0043       7.3      39      57 ..      11      29 ..       2      31 .. 0.75
   2 ?    3.2   0.0     0.029        50      27      51 ..     130     175 ..     122     177 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0043
   PF04083.11 39 klekkpvVlLqHGLlqsSe 57
                  ++++ ++ L+HGL ++ +
  MMETSP0890-20130614|36671_1 11 DENAELIIVLMHGLGSNGD 29
                 566677899*****99876 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.029
   PF04083.11  27 lhRippkne.....................vssklekkpvVlLqHG 51 
                  lh+  +++e                       +k +kkp +++ HG
  MMETSP0890-20130614|36671_1 130 LHHAFHNQEsrfdgiihlsgapidievwasRLQKISKKPRIYISHG 175
                  5666666666666666666666666666655678889999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.76
# Mc/sec: 725.21
//
Query:       MMETSP0890-20130614|36674_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-23   82.5   0.0    2.9e-23   82.3   0.0    1.0  1  PF01263.15 Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> PF01263.15  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   2.1e-27   2.9e-23       4      95 ..      28     118 .]      25     118 .] 0.94

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 2.1e-27
                  EEETTTEEEEEEET---EEEEEEETT.SCEBSB---CSHHHHHHSC.G-HHEETSC-SEEEGGEEE----EEECCECBTTTEEETTBGGG...SB- CS
   PF01263.15   4 tlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkda.yfGatlgrvanRianGeFeldGkpyqlpkneegknplHGgarg...rkW 95 
                  ++k +   ++++s++GA l+slk+ +   +e  l++++++e +k++ y+Gat+gr+anRi++G+F+ld   y lpkn+ +k+ lHGg rg   r W
  MMETSP0890-20130614|36674_1  28 RMKSE-SIQVTFSEFGASLVSLKFAG---KEMTLNYSTLAELEKNTtYYGATIGRFANRIKDGTFTLDNEMYALPKNN-DKHFLHGGPRGwshRVW 118
                  56665.79******************...89***********************************************.***********988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 441.83
//
Query:       MMETSP0890-20130614|36680_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-12   46.6   0.0      4e-12   45.8   0.0    1.3  1  PF00293.23 NUDIX domain


Domain annotation for each model (and alignments):
>> PF00293.23  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.9e-16     4e-12       5     133 ..       8     149 ..       5     150 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 2.9e-16
                  EEEEEEETTS...EEEEEEECSTTSSTTEEEESBEEETTTTSHHHHHHHHHHHHHHS-EEEEEEEEEEEEEEETTCCC........SEEEEEEEEEEEEETGGGCSTTTS......TEEEEEEEEHHHHHHHHHCTTHHHHHHHHH CS
   PF00293.23   5 vsvillnedg...kvLlvqrsrskltapglwefPgGkvdkgEspeeaAvRElkEEtGidlekvrlvgvanydaptddp........kreevifflaelpddepeiilntt......Evsevrwvpleelldlalagklryliplll 133
                  + v++ +ed+   ++L  +r  ++   + +w f gG+ ++gEsp eaA+R +k E+++dl ++r+  v++y      +              +f +e++++e    l+++      E ++++w++++ +l    ++++++++++l+
  MMETSP0890-20130614|36680_1   8 ADVLVTREDRgelEILSGRRCVHP---QPDWWFVGGRMRPGESPAEAAARNVKREINLDLHPKRFSVVGVYSLIWQMRvqapatngTCDLSAVFTVEISHTE-AQSLDFNhsfdkkEYRDAQWITPAIILSNDFHPAYQQAVRDLM 149
                  678999999999***********8...79999****************************888888888888887777888899887788888888888888.555566668999**********************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.97
# Mc/sec: 689.26
//
Query:       MMETSP0890-20130614|36692_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   15.7   4.7     0.0076   15.3   3.3    1.1  1  PF07505.6  Phage protein Gp37/Gp68
  ------ inclusion threshold ------
      0.018   14.2   1.4      0.091   11.9   0.1    1.9  2  PF09520.5  MjaII restriction endonuclease
      0.039   13.9   0.1      0.079   12.9   0.1    1.5  1  PF13826.1  Domain of unknown function (DUF4188)
      0.055   12.3   4.1      0.048   12.5   2.0    1.5  2  PF11707.3  Ribosome 60S biogenesis N-terminal
      0.065   12.7   1.1       0.17   11.4   0.3    2.0  2  PF14053.1  Domain of unknown function (DUF4248)
      0.085   11.8   2.4        0.1   11.6   1.6    1.1  1  PF09987.4  Uncharacterized protein conserved in archaea (DUF2226)
        0.1   12.0   3.5       0.13   11.7   2.4    1.2  1  PF14028.1  SpaB C-terminal domain
        0.1   12.8   9.2       0.26   11.6   6.4    1.8  1  PF12711.2  Kinesin motor
       0.13   11.1   2.1       0.19   10.6   1.5    1.2  1  PF03313.10 Serine dehydratase alpha chain
       0.14   11.8   3.5       0.55   10.0   0.0    3.1  3  PF06628.7  Catalase-related immune-responsive
       0.16   11.0   2.0       0.21   10.6   1.4    1.2  1  PF06023.7  Archaeal protein of unknown function (DUF911)
       0.23   11.0  20.7       0.23   11.0   8.4    2.3  3  PF12474.3  Polo kinase kinase
       0.47    8.6   7.2       0.52    8.5   5.0    1.1  1  PF03961.8  Protein of unknown function (DUF342)
       0.54    9.6  13.7       0.87    8.9   9.4    1.4  1  PF12925.2  E2 domain of amyloid precursor protein
       0.77    8.2  18.6          1    7.8  12.9    1.2  1  PF09731.4  Mitochondrial inner membrane protein
          1    8.1   7.2          1    8.1   4.3    1.5  1  PF05138.7  Phenylacetic acid catabolic protein
        1.1    8.7   9.2        3.2    7.2   5.8    1.7  2  PF04216.7  Protein involved in formate dehydrogenase formation
        1.5    8.6   5.4        8.2    6.2   3.1    2.4  2  PF05511.6  Mitochondrial ATP synthase coupling factor 6
        1.6    8.8   5.6        1.7    8.7   0.1    3.1  4  PF09236.5  Alpha-haemoglobin stabilising protein
        3.1    5.9   7.8        1.3    7.1   2.8    1.8  2  PF00171.17 Aldehyde dehydrogenase family
        3.7    7.3  16.9        5.7    6.7   2.0    1.6  2  PF03938.9  Outer membrane protein (OmpH-like)
        6.7    7.3   7.9         42    4.7   1.7    2.8  3  PF12776.2  Myb/SANT-like DNA-binding domain
        7.8    5.0   9.0        9.4    4.7   6.2    1.1  1  PF10337.4  Protein of unknown function (DUF2422)


Domain annotation for each model (and alignments):
>> PF07505.6  Phage protein Gp37/Gp68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.3   1.3e-05    0.0076      34     167 ..      17     149 ..      10     153 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-05
    PF07505.6  34 aerleatgaekyeegarrrksaakaeakvklqeekleipatwkkprrvFvnSmsDlfhd..evpdefiaevfevieeapqhtfqiltKri.erlrkllskealevlllsnvwlgvsvenqaeaerriekLrkvpAav 167
                  a r + t++e +++  r r  +a a++ +  +ee+l+   ++++  r   n m++l +d  e+ d+ i+++ ++ie+++++t q l K++ e++r+++++++++++ + +   +v +  +  ae+r+++L++  A++
  MMETSP0890-20130614|36692_1  17 AMRNNVTANELFSSDERDRIVKAFADKLRVSREETLAKLEARQRTER--ANIMAELKQDlsEIVDSVIDKLKTQIESNQKLTRQQLEKKHnEEMRSFAKQQQQHLKAF-HETCLVNLRASL-AEQRADALKRFTAEI 149
                  45666778888887777777777777776667776666666665555..5778888775226*********************9998776156777777777765554.445556666555.788999999999876 PP

>> PF09520.5  MjaII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.1   0.00061      0.36      60     139 ..      38     117 ..      25     126 .. 0.71
   2 ?   11.9   0.1   0.00015     0.091      10      66 ..      84     165 ..      76     169 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00061
    PF09520.5  60 rslsTsLGqsifEeiariiAegthavaekqydvqgkidseakekideilnklkkkenlakkeseneelrealskeeekie 139
                  +++  +L  s  E +a++ A+++ + a+   ++++ +++ +  +id++  +++++++l +++ e+++ +e++s ++++ +
  MMETSP0890-20130614|36692_1  38 KAFADKLRVSREETLAKLEARQRTERANIMAELKQDLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQ 117
                  55666666666788999999999999998888888888888888888888888777666665555555555555444443 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00015
    PF09520.5  10 kikeel...nevlkkklekysdeelree..dkekkkmPFheall....................pkevlklskferslsTsL 66 
                  k+k+++   +++ +++lek+ +ee+r++  +++++ + Fhe  l                     ++++k +++e+++sTs+
  MMETSP0890-20130614|36692_1  84 KLKTQIesnQKLTRQQLEKKHNEEMRSFakQQQQHLKAFHETCLvnlraslaeqradalkrftaEINAYKDNQLEHAFSTSF 165
                  4444431114567899********9999666777889****9999*****************998999************98 PP

>> PF13826.1  Domain of unknown function (DUF4188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00013     0.079      61     100 ..      91     128 ..      82     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
    PF13826.1  61 svekLeafakseeHreawrkfnkkvkksgavgifHEtYev 100
                  s +kL++   +++H e +r+f k+  +++++  fHEt  v
  MMETSP0890-20130614|36692_1  91 SNQKLTRQQLEKKHNEEMRSFAKQ--QQQHLKAFHETCLV 128
                  66777777779***********66..899********887 PP

>> PF11707.3  Ribosome 60S biogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.0   8.1e-05     0.048     121     197 ..      22      99 ..       2     110 .. 0.81
   2 ?   -2.1   0.0       2.2   1.3e+03     196     218 ..     116     138 ..     104     161 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.1e-05
    PF11707.3 121 kkskkakea...siRknfikFllsflsvgspelkrdiLeqkel.lsallkglkkDspetvleiLstLkekvlkdksikrst 197
                   ++++       + R  ++k +   l+v+  e++ ++  +++    +++ +lk+D  e+v  +++ Lk+++ ++++++r++
  MMETSP0890-20130614|36692_1  22 VTANE---LfssDERDRIVKAFADKLRVSREETLAKLEARQRTeRANIMAELKQDLSEIVDSVIDKLKTQIESNQKLTRQQ 99 
                  33333...244588999999999999999999999999999999*********************************9987 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.2
    PF11707.3 196 stKvklfnektleklaslyskdg 218
                  ++ +k f e++l +l+++  +++
  MMETSP0890-20130614|36692_1 116 QQHLKAFHETCLVNLRASLAEQR 138
                  45566777777777777444444 PP

>> PF14053.1  Domain of unknown function (DUF4248)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00028      0.17      25      61 ..      82     118 ..      78     122 .. 0.92
   2 ?   -1.7   0.0       3.4     2e+03      23      37 ..     140     154 ..     135     164 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00028
    PF14053.1  25 vrkLrrwIkrnpeLqeeLaaagyrkrqrsltprqvql 61 
                  + kL+  I+ n++L  + ++   ++++rs+ ++q+q 
  MMETSP0890-20130614|36692_1  82 IDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQH 118
                  689*******************************986 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.4
    PF14053.1  23 sAvrkLrrwIkrnpe 37 
                   A+++++  I+ +++
  MMETSP0890-20130614|36692_1 140 DALKRFTAEINAYKD 154
                  689999999987764 PP

>> PF09987.4  Uncharacterized protein conserved in archaea (DUF2226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.6   0.00017       0.1     155     263 ..      23     128 ..       9     159 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00017
    PF09987.4 155 dleellgkdayekleevlkepetvsReelLkKlGikepdeesietiledvfepsdeelaeddleelkekilseivlkvkrmegvvdvlvnlkikveegryyifgdvnvv 263
                    +el++ d+ + +     +   vsRee L Kl   +  e    +i+ ++ +    e++++ +++lk +i+s+ +l+ +++e++ + ++    k++++ ++ f +   v
  MMETSP0890-20130614|36692_1  23 TANELFSSDERDRIVKAFADKLRVSREETLAKLEARQRTER--ANIMAELKQ-DLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHETCLV 128
                  56799999999999999999999**********98887765..466666666.4446779999*********************9999999999999988888886554 PP

>> PF14028.1  SpaB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.4   0.00021      0.13     166     260 ..      50     143 ..      16     156 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00021
    PF14028.1 166 gevlarlarayeqrrevlrarrpaldalrdaarrdglrfeapaapaggmsaprawlraladalpalgallaalrrilaappdraslaealralla 260
                  + +    ar++ +r++ +++++++l ++ d + + +  +++  ++ + ++++++ ++++++++++ ++ l+a ++     + raslae++ + l 
  MMETSP0890-20130614|36692_1  50 ETLAKLEARQRTERANIMAELKQDLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHETCL-VNLRASLAEQRADALK 143
                  33444457778888888999999**************************************************99875.7888888888877765 PP

>> PF12711.2  Kinesin motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.4   0.00043      0.26       1      82 [.      48     130 ..      48     134 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00043
    PF12711.2   1 RedkIkrLeklldgslsaeslleeen..eeLkeEiklLreqveknpevtrfalEnlrlreelrrlqnfeeegerevlleeiseL 82 
                  Re+++++Le+  +++  +   ++++   e     i+ L++q+e n+++tr++lE +  +ee+r++ + +++  +    + + +L
  MMETSP0890-20130614|36692_1  48 REETLAKLEARQRTERANIMAELKQDlsEIVDSVIDKLKTQIESNQKLTRQQLEKK-HNEEMRSFAKQQQQHLKAFHETCLVNL 130
                  788888888877776665554444433345556699******************75.578888888877766666555555555 PP

>> PF03313.10  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00031      0.19      20     112 ..      45     141 ..      32     150 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00031
   PF03313.10  20 vpgegevglklaailgamkgdveagl.evlegilpgdlevarralalnkklaeeglegsyg.......kkaeaevlkedplelldravalalAvseenaag 112
                  + +++e+ +kl+a   + ++++ a+l + l++i++  +++ ++ +++n+kl +++le++ +       k   +++ + + ++ +  ++++a + +e++a+ 
  MMETSP0890-20130614|36692_1  45 RVSREETLAKLEARQRTERANIMAELkQDLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNeemrsfaK---QQQQHLKAFHETCLVNLRA-SLAEQRADA 141
                  45556889999999999999******9889**************************9999966554321...1111112233444455544.456777765 PP

>> PF06628.7  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00092      0.55      19      39 ..      27      46 ..      25      56 .. 0.82
   2 ?   -0.6   0.0       1.9   1.1e+03      24      44 ..      62      82 ..      55      88 .. 0.64
   3 ?    0.6   0.1      0.79   4.7e+02      18      28 ..     109     119 ..     108     122 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00092
                 HS-HHHHHHHHHHHHHCGCCS CS
    PF06628.7 19 slseaeqerlveniafelskv 39
                 ++s +e++r+v+++a+ l  v
  MMETSP0890-20130614|36692_1 27 LFSSDERDRIVKAFADKLR-V 46
                 79**************995.3 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHCGCCS-HHCH CS
    PF06628.7 24 eqerlveniafelskvseeei 44
                 e++++ + +  +ls + +  i
  MMETSP0890-20130614|36692_1 62 ERANIMAELKQDLSEIVDSVI 82
                 666666666666666665533 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.79
                  HHS-HHHHHHH CS
    PF06628.7  18 rslseaeqerl 28 
                  rs+ +++q++l
  MMETSP0890-20130614|36692_1 109 RSFAKQQQQHL 119
                  799*******9 PP

>> PF06023.7  Archaeal protein of unknown function (DUF911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.4   0.00035      0.21      72     151 ..      65     143 ..      34     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00035
    PF06023.7  72 eeeaklllGqaiHevfakaleevkkliysgeklsssleeslledei.alleevaekakelykylasrlsaeleevrskfek 151
                  +  a   l q + e++  +++++k++i+s++kl+ ++ e   ++e+ +  ++ +++ k+ ++  + +l+a+l+e r+   k
  MMETSP0890-20130614|36692_1  65 NIMA--ELKQDLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMrSFAKQQQQHLKAFHETCLVNLRASLAEQRADALK 143
                  3222..3467899********************9999999999999999999999*******************9987554 PP

>> PF12474.3  Polo kinase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  12.7    0.0016      0.95      36     127 ..      38     123 ..      18     137 .. 0.80
   2 ?   11.0   8.4   0.00038      0.23       5      64 ..      85     144 ..      81     160 .. 0.88
   3 ?    1.5   0.0      0.33     2e+02      90     113 ..     135     158 ..     126     172 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0016
    PF12474.3  36 kreiekleqrqeqerrelpKriRaEqekrlkkFkeslkiekkelkeeveklkqfkeqrkkrlkaekeeleqkheekekellakqeenleeal 127
                  k   +kl+ + e+ + +l  r+R+E+ + ++  k+ l +    +++  +klk   +q + ++k  +++le+kh+e+++++ ++q++ l+ + 
  MMETSP0890-20130614|36692_1  38 KAFADKLRVSREETLAKLEARQRTERANIMAELKQDLSEI---VDSVIDKLK---TQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFH 123
                  5556788889999999999999999999998888887655...555678888...8889999999999999999999999999999998754 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00038
    PF12474.3   5 akeqlkdkfelertqllkryekEleqlerqqkreiekleqrqeqerrelpKriRaEqekr 64 
                   k+q++ +  l r+ql+k+++ E+ + ++qq+++ + + ++  +++r++   +Ra++ kr
  MMETSP0890-20130614|36692_1  85 LKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHETCLVNLRASLAEQRADALKR 144
                  688999999999**************************9999999999999999998776 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.33
    PF12474.3  90 keqrkkrlkaekeeleqkheekek 113
                   eqr ++lk+   e++  ++++++
  MMETSP0890-20130614|36692_1 135 AEQRADALKRFTAEINAYKDNQLE 158
                  478888888888888877777754 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.0   0.00088      0.52     275     393 ..      15     124 ..       3     164 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00088
    PF03961.8 275 kqilnslikagekiivngrkgkiiggnikagkevkakklGselgtkteievgldepelkekl.keleeeleel.eeeleklkkklkklpklkaegqlesekkeqleklletkeklkeelee 393
                  ++++ ++++a+e +  + ++ +i++    +++++++        + t  +++ ++   ++++ +el+++l e+  + ++klk ++++++kl  ++qle+++ e++ +  ++++++ +  +e
  MMETSP0890-20130614|36692_1  15 QDAMRNNVTANELFS-SDERDRIVK---AFADKLRVS------REETLAKLEARQRTERANImAELKQDLSEIvDSVIDKLKTQIESNQKLT-RQQLEKKHNEEMRSFAKQQQQHLKAFHE 124
                  556666676666555.355667776...455555555......344555554555566666669********9888899***********55.6888999988888888888777766654 PP

>> PF12925.2  E2 domain of amyloid precursor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   9.4    0.0015      0.87      35     131 ..      54     155 ..      21     162 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0015
                  HHHHHHHHH....HHHHHHHHHHHHTTTTSS-HHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-SSS-- CS
    PF12925.2  35 rLeekhrer....mkkvmkeweeaeerykelkkadP.kkaeklkkelterFqekvqalEeeaeaerqqLvetHqqrveahlnerrraalekylkalqaeppn 131
                  +Le+++r      m+++ ++ +e  +++ ++ k+    + +  +++l ++ +e + ++ +++++  +  +et  + + a+l+e+r  al+ ++++++a + n
  MMETSP0890-20130614|36692_1  54 KLEARQRTEraniMAELKQDLSEIVDSVIDKLKTQIeSNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHETCLVNLRASLAEQRADALKRFTAEINAYKDN 155
                  555555555111155555666665555444444443044455789999999999999999999888888888899999******************998776 PP

>> PF09731.4  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  12.9    0.0017         1     243     367 ..      25     150 ..       9     160 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0017
    PF09731.4 243 dnl.skddlesliasakeevdqls.kklaelkaeeeeeleraLkekkeellkkleeelskeleekeakleeklrqefekekeelrekyeeeLrteLkrqaealeqklknelalqeielqrefekeik 367
                   +l s+d+ + +++ + +++     + la+l a+ + e +++++e k++ l++    ++ +l+ +++  ++  rq++ek++ e   ++ ++ ++ Lk+ +e+    l+  la+q+++  ++f+ ei+
  MMETSP0890-20130614|36692_1  25 NELfSSDERDRIVKAFADKLRVSReETLAKLEARQRTERANIMAELKQD-LSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHETCLVNLRASLAEQRADALKRFTAEIN 150
                  4445555555555555555543320235555555555555555555533.44444444445555555666688888888888888888888888888999999999999999999999999999987 PP

>> PF05138.7  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.3    0.0017         1     161     258 ..       5     123 ..       1     127 [. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0017
                  --------HHHHHHHHHGGGGGGGG---HHH.....................HHHHH------GGGGHHHHHHHHH---TTTT-----S-------------TT---HHHHH.HHHHHH- CS
    PF05138.7 161 dGteeskermqdAlnrlwpyvlelfgpddae.....................qalaaagkavdndelrqkfvakvvevleeagLtlPdepalkeggrqGehsehlgellael.qalqrah 258
                  +++ e   r+qdA+++    ++elf +d+++                     +a + + +a   +el+q+  + v++v+++++ ++  +++l++++ +++h+e++    ++  q+l++ h
  MMETSP0890-20130614|36692_1   5 QSSLEISSRCQDAMRNN-VTANELFSSDERDrivkafadklrvsreetlaklEARQRTERANIMAELKQDLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQqQHLKAFH 123
                  55556667888888765.46789999999889999999999999999998877778888888899***************************************9988555404544444 PP

>> PF04216.7  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2       0.2   1.2e+02      96     141 ..      35      79 ..       7      86 .. 0.69
   2 ?    7.2   5.8    0.0055       3.2      51     140 ..      83     172 ..      47     185 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.2
    PF04216.7  96 aLlaalaaaalpeaaaaaldelekadeaelealadallagefpavk 141
                  ++++a+a++ l  + +++l++le+ + +e+++++++l ++  + v+
  MMETSP0890-20130614|36692_1  35 RIVKAFADK-LRVSREETLAKLEARQRTERANIMAELKQDLSEIVD 79 
                  344444444.345567789999999999999999988886666655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0055
    PF04216.7  51 qklleelpapapldaervesalaegvpplaasalerdpawre.lleaLlaalaaaalpeaaaaaldelekadeaelealadallagefpav 140
                  +kl  +++ +++l++++ e++ +e +  +a+++ +  +a++e  l +L a la++ + +a ++ ++e++++++++le+++++ ++++++  
  MMETSP0890-20130614|36692_1  83 DKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHEtCLVNLRASLAEQ-RADALKRFTAEINAYKDNQLEHAFSTSFDDHLSVN 172
                  2223334667777777778888899*******999999999889999*****999.5899999****************999988776654 PP

>> PF05511.6  Mitochondrial ATP synthase coupling factor 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.1     0.014       8.2      10      74 ..       9      74 ..       2     127 .. 0.70
   2 ?   -0.9   0.0       2.4   1.4e+03      10      32 ..     121     137 ..     108     160 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.014
                 XXXXXXXXXXXXXXXXXXXXX-----SSTTGGGTTSSTTTTTS.S----.-TT---HHHHHHHCCC CS
    PF05511.6 10 vlrsavsvelrrnigvtAvllnkelDpiqklFvdKireykqks.kssggklvdagpevekelkeel 74
                  + s ++  +r n+  +    + e D i k+F dK+r  ++   ++ + +     ++++ elk++l
  MMETSP0890-20130614|36692_1  9 EISSRCQDAMRNNVTANELFSSDERDRIVKAFADKLRVSREETlAKLEARQRTERANIMAELKQDL 74
                 44555666666666655555569*************976443212222223333444444444444 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.4
                  XXXXXXXXXXXXXXXXXXXXX-- CS
    PF05511.6  10 vlrsavsvelrrnigvtAvllnk 32 
                  ++++++ v+lr +++      ++
  MMETSP0890-20130614|36692_1 121 AFHETCLVNLRASLA------EQ 137
                  444444444444433......33 PP

>> PF09236.5  Alpha-haemoglobin stabilising protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.92   5.4e+02      56      80 ..      30      54 ..      18      58 .. 0.84
   2 ?    8.7   0.1    0.0028       1.7      55      87 ..      59      91 ..      53      93 .. 0.87
   3 ?   -0.7   0.3       2.6   1.5e+03      49      83 ..      97     132 ..      94     138 .. 0.65
   4 ?   -1.0   0.0       3.1   1.9e+03      57      78 ..     136     157 ..     125     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.92
    PF09236.5 56 qeeqdkalqelrqelntlaasflak 80
                  +e+d+ ++ + ++l    ++ lak
  MMETSP0890-20130614|36692_1 30 SDERDRIVKAFADKLRVSREETLAK 54
                 689*******999999888888877 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0028
    PF09236.5 55 eqeeqdkalqelrqelntlaasflakyrdflks 87
                 ++ e+ + + el+q+l+ + +s ++k ++ + s
  MMETSP0890-20130614|36692_1 59 QRTERANIMAELKQDLSEIVDSVIDKLKTQIES 91
                 46799999******************9998887 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 2.6
    PF09236.5  49 kkqvsgeqeeqdkalqe.lrqelntlaasflakyrd 83 
                  ++q++ +++e+ +++ +  +q l+++ ++ l   r 
  MMETSP0890-20130614|36692_1  97 RQQLEKKHNEEMRSFAKqQQQHLKAFHETCLVNLRA 132
                  677777777777776541456677777776666665 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 3.1
    PF09236.5  57 eeqdkalqelrqelntlaasfl 78 
                  e++  al+ +  e+n+  ++ l
  MMETSP0890-20130614|36692_1 136 EQRADALKRFTAEINAYKDNQL 157
                  5667799999999988766555 PP

>> PF00171.17  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.8    0.0021       1.3      41     115 ..      21     103 ..       3     116 .. 0.66
   2 ?    1.2   0.7      0.14        81      14      70 ..      94     155 ..      81     162 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0021
                  HHHHHCTS-HHHHHHHHHHHHHHHH.HTHHHHHHHHHH...H----HHHHHHHHHHH....HHHHHHHHHHHHHC-CCEEEEC CS
   PF00171.17  41 afkawaklpaeeRaeilrkaadlle.errdelaelevl...etGkplaearaevaea....idvlryyagaaeklegevlpss 115
                     a +  +  eR +i++++ad l+ +r++ la+le++   e    +ae + +++e+    id l+  ++  +kl+ + l+++
  MMETSP0890-20130614|36692_1  21 NVTANELFSSDERDRIVKAFADKLRvSREETLAKLEARqrtERANIMAELKQDLSEIvdsvIDKLKTQIESNQKLTRQQLEKK 103
                  44456677899**************999999****998222344455555556555422236667777777777666666663 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.14
                  TTTEEEEEEEE---HHHHHHHHHHHHHHHH.....HHCTS-HHHHHHHHHHHHHHHHHTHHH CS
   PF00171.17  14 PatgeviakvaaataedvdaavaaAkaafk.....awaklpaeeRaeilrkaadlleerrde 70 
                    t++++ k ++ +++ + +  ++  +af+     + ++  ae+Ra+ l+++ +++++ +d+
  MMETSP0890-20130614|36692_1  94 KLTRQQLEKKHNEEMRSFAKQQQQHLKAFHetclvNLRASLAEQRADALKRFTAEINAYKDN 155
                  44455555555555555555555555555555555678999999999999999999988875 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.0    0.0096       5.7      72     123 ..      39      90 ..      15      94 .. 0.74
   2 ?    6.5  11.2     0.011       6.4      34     121 ..      52     152 ..      46     159 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0096
    PF03938.9  72 qlsaeaekakeeelqakeqelqayaqqlqaelqaeqqevlqklidkiadaik 123
                    +++++ ++ee l++ e+  ++ + ++ ael++   e+ + +idk++  i+
  MMETSP0890-20130614|36692_1  39 AFADKLRVSREETLAKLEARQRTERANIMAELKQDLSEIVDSVIDKLKTQIE 90 
                  5677788888888888888888888888888888888888888888877765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.011
    PF03938.9  34 ykelqaklqee....akekqqelqakkkel.qkeqknlqseraqlsaeaekakeeelq....akeqelqayaqqlq....aelqaeqqevlqklidkiada 121
                  +++l+a++ +e    ++e++q+l +  + + +k++ +++s+++  ++++ek+ +ee+     +++q l+a+ ++      a l+++++ +l++++ +i+++
  MMETSP0890-20130614|36692_1  52 LAKLEARQRTEraniMAELKQDLSEIVDSViDKLKTQIESNQKLTRQQLEKKHNEEMRsfakQQQQHLKAFHETCLvnlrASLAEQRADALKRFTAEINAY 152
                  56777777777434444555555555555588888888888876666666666666664444777777777776555666779999999******999986 PP

>> PF12776.2  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.11        64      14      73 ..      14      72 ..       9      75 .. 0.73
   2 ?    4.7   1.7     0.071        42      34      66 ..      78     112 ..      72     129 .. 0.75
   3 ?    0.5   0.1       1.4   8.4e+02       4      23 ..     116     135 ..     113     180 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.11
    PF12776.2 14 lleeieagnrpkkqgftkegwkelvkkfnektglkvtkeqlknrlkklkkeYklwkelke 73
                 +++  +++n + ++ f+++  +++vk+f +k + +++ +  k   +++ ++ +++ elk+
  MMETSP0890-20130614|36692_1 14 CQDA-MRNNVTANELFSSDERDRIVKAFADKLRVSREETLAKLEARQRTERANIMAELKQ 72
                 4444.455555799****************887777777777777777666667777765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.071
    PF12776.2  34 wkelvkkfne..ktglkvtkeqlknrlkklkkeYk 66 
                   +++++k+++  + ++k+t++ql++++++ ++ + 
  MMETSP0890-20130614|36692_1  78 VDSVIDKLKTqiESNQKLTRQQLEKKHNEEMRSFA 112
                  56788888888888899999999999877766643 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 1.4
    PF12776.2   4 deetriflellleeieagnr 23 
                  ++++++f e +l +++a   
  MMETSP0890-20130614|36692_1 116 QQHLKAFHETCLVNLRASLA 135
                  56777777777777666555 PP

>> PF10337.4  Protein of unknown function (DUF2422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.2     0.016       9.4     338     446 ..      29     141 ..       2     151 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.016
    PF10337.4 338 aieekyaevgayetkesikllearaaersltvseldevmkalhepfaelleavdeglehivewleaanrfriyslllpknkkkhkekqkelaael....kevkealeealakf 446
                  + +e ++ v+a+  k ++  +e+ a+ ++++  e+  +m +l++  +e++++v + l++ +e  +  +r+ + + +  ++++  k++q+ l+a       ++++ l e++a+ 
  MMETSP0890-20130614|36692_1  29 SSDERDRIVKAFADKLRVSREETLAKLEARQRTERANIMAELKQDLSEIVDSVIDKLKTQIESNQKLTRQQLEKKHNEEMRSFAKQQQQHLKAFHetclVNLRASLAEQRADA 141
                  33444577788888888777777799999999999999999999999999999999999999999999999888788888887777777776665555544444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2459  (0.179857); expected 273.4 (0.02)
Passed bias filter:                      886  (0.064804); expected 273.4 (0.02)
Passed Vit filter:                       130  (0.00950848); expected 13.7 (0.001)
Passed Fwd filter:                        26  (0.0019017); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.77u 0.45s 00:00:01.22 Elapsed: 00:00:00.77
# Mc/sec: 597.53
//
Query:       MMETSP0890-20130614|36689_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       638  (0.0466647); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        17  (0.00124342); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.43s 00:00:01.27 Elapsed: 00:00:00.72
# Mc/sec: 1111.64
//
Query:       MMETSP0890-20130614|36695_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1049.67
//
Query:       MMETSP0890-20130614|36698_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 453.71
//
Query:       MMETSP0890-20130614|36707_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-17   62.4   0.0      7e-17   61.9   0.0    1.1  1  PF12697.2  Alpha/beta hydrolase family
    1.8e-12   47.1   0.0    6.9e-12   45.2   0.0    1.8  1  PF12695.2  Alpha/beta hydrolase family
    4.9e-09   35.9   0.0    7.9e-09   35.3   0.0    1.2  1  PF00561.15 alpha/beta hydrolase fold
      0.002   17.5   0.1      0.088   12.0   0.0    2.1  2  PF10230.4  Uncharacterised conserved protein (DUF2305)
     0.0026   16.9   0.0     0.0049   16.0   0.0    1.4  1  PF01738.13 Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.027   13.6   0.8       0.31   10.1   0.5    2.2  1  PF05057.9  Putative serine esterase (DUF676)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   3.1e-20     7e-17       1     217 [.       1     229 [.       1     235 [. 0.71

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 3.1e-20
                  EEE------------HHHHHHT..TTSEEEEE-----------S...S--HHHHHHHHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT.................---TTHHHHHHHHHH----....--H..HHHHH.....-----HHHHHH--GGGG....GG........------HHHHTT--S-EEEEE-----HHHHHHHHHHHHHSTT..EEEEE---SSSS- CS
    PF12697.2   1 vvllHGlggsaeswrplaeaLa..agyrvvapDlpGhGrSdrppdydpdtledlaadlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas.................alrpagpsllrrllagraaalrdlaarafarlf.....dgdelealvradaaalaellraa........lldadlrealarldvPvlviageaDrvvppeearrlaealpg..arvvvlpgagHll 217
                  +v++HG  + a++w+ ++e ++  +g + +a++l   G         + t+e++++dl+  + +l+++++v+vGHS G+++++   a  ++  ++lvl++p++  p+                               l+   +  + ++a+ ++ +      +++    +++ d ++l e+++++         +   +r +++ +++P+lv+a+++D+++  e++r l + +p+  a+++++++  H  
  MMETSP0890-20130614|36707_1   1 LVFVHGCQHKASYWKGMQEIFSerDGLESIAVELS-VG--------RFCTIETYLDDLRSQIFHLNAEELVFVGHSIGALIVQSHIAT-GGIGKALVLLAPVPLDPNLlfrhafglalqtpitnlT------------LSTLTQNSKHVMAPNLDMMKynfflPSTKSTTRIDKDGQSLDEYYTQQithldsagAALWNCRGNARDISIPTLVLAAAQDKLIQLETVRDLVKIFPQnlADLKIIENQAHAF 229
                  79*******************7666*********9.22........2669*********************************99985.56789*********88887887776665444333220............222222222222211111110001122222333333445555555554555554343444556889999***************************98668******999975 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0     3e-15   6.9e-12       2     141 ..       1     227 [.       1     228 [. 0.80

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 3e-15
    PF12695.2   2 vvlvhGaggdssayeplaealakr.gfavvavdlpghgasegaaaakrvlaadll..dleriilvGhSlGGgvalelagrddrvkglvllapf..............pdgedlakltl...............................................................................pvllihGtrDgvvppeeaeklakalp.gdaelvviegasH 141
                  +v+vhG   ++s ++++ e++++r g+  +av+l+     + ++ ++++   +    ++e++++vGhS+G+ ++    +     k+lvllap+                        l                                                                               p+l++ +++D+++  e +++l+k +p + a+l +ie+  H
  MMETSP0890-20130614|36707_1   1 LVFVHGCQHKASYWKGMQEIFSERdGLESIAVELSVGRFCTIETYLDDLR-SQIFhlNAEELVFVGHSIGALIVQSHIATGGIGKALVLLAPVpldpnllfrhafglA---------LqtpitnltlstltqnskhvmapnldmmkynfflpstksttridkdgqsldeyytqqithldsagaalwncrgnardisiPTLVLAAAQDKLIQLETVRDLVKIFPqNLADLKIIENQAH 227
                  69*******************************98888888888888877.54447899****************999977777888888885222222223333331.........03333334445555566677777778888888888888888888888888888888888888888888888888888888**************************999********999 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.5e-12   7.9e-09      25     218 ..      40     230 ..      35     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 3.5e-12
                  GSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--.........HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHHCHHHHHHCHCCCCCHHH.HHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT-TSSEEEEECCTTSCCHHCHHHHHHHCSTT..EEEEEETTHHCSHHH CS
   PF00561.15  25 yttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtva.........vlsdglssdvlnrgstltlladnvagrlskgikplqgdasvqaqsllrpqvtdflkrfd.ansyaregetraldgkllaalgrdlvwdvtetlktilvptlvisgtdDplvpykaseklaelipk..sqlvvidgpgHlafl 218
                  +t +    dl+  + +l+ ++l++vGhS G++i+    a  +   ka+vll++v+             +l+ +++n      +l+  +++ + +  +p++ +   ++++ ++   t+++k  + ++ y      +  + ++    +  + w++    ++i +ptlv+ + +D+l++++++++l + +p+  + l  i++ + +af 
  MMETSP0890-20130614|36707_1  40 CTIETYLDDLRSQIFHLNAEELVFVGHSIGALIVQSHIATGGI-GKALVLLAPVPldpnllfrhAFGLALQTPITNL-----TLSTLTQN-SKHVMAPNLDMMKYNFFLPSTKSTTRIDKDGQsLDEYYT----QQITHLDS---AGAALWNCRGNARDISIPTLVLAAAQDKLIQLETVRDLVKIFPQnlADLKIIEN-QAHAFA 230
                  5666677788888889***********************9999.************999966666666666666664.....44444444.444444555555544478888877777777776444444....22333333...455799999999********************************8888999888.666655 PP

>> PF10230.4  Uncharacterised conserved protein (DUF2305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.9e-05     0.088      70     100 ..      47      75 ..      40      92 .. 0.74
   2 ?    3.7   0.0     0.014        31     203     265 ..     163     229 ..     108     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.9e-05
    PF10230.4  70 dflkelvekkkkkkvklilvgHSvGaYiale 100
                  d l++ + +   +  +l++vgHS+Ga i++ 
  MMETSP0890-20130614|36707_1  47 DDLRSQIFHL--NAEELVFVGHSIGALIVQS 75 
                  4444444433..4789************986 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.014
    PF10230.4 203 reikedd..qdelikaaeen...qkrlvfyfgkkDhWvpeetrdelieelgrlegkvevdekgipHaF 265
                  ++i++ d     l+++  ++   + +  ++ + +D+    et  +l++ +++   ++++  ++ +HaF
  MMETSP0890-20130614|36707_1 163 QQITHLDsaGAALWNCRGNArdiSIPTLVLAAAQDKLIQLETVRDLVKIFPQNLADLKII-ENQAHAF 229
                  5666666655667776555566666889999********************655555555.5668999 PP

>> PF01738.13  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.1e-06    0.0049     140     196 ..     181     235 ..     173     244 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.1e-06
   PF01738.13 140 eaakikapilahlgeeDpfipaeaaedleealakankdlelkiYpgagHaFaadsre 196
                  +a++i+ p l++++ +D++i+ e++ dl + +   +  ++lki ++ +HaFa ++ e
  MMETSP0890-20130614|36707_1 181 NARDISIPTLVLAAAQDKLIQLETVRDLVKIF--PQNLADLKIIENQAHAFADPDWE 235
                  6899****************************..7778899999********98765 PP

>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   0.00014      0.31      74      98 ..      56      78 ..       1      82 [. 0.67

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
    PF05057.9 74 kkdknkkiSfvghSlGgliaraaia 98
                  +   + + fvghS+G li+++ ia
  MMETSP0890-20130614|36707_1 56 LNA--EELVFVGHSIGALIVQSHIA 78
                 333..3689***********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 1057.70
//
Query:       MMETSP0890-20130614|36708_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.6   0.0        0.3   10.5   0.0    1.5  1  PF13544.1 Type IV pilin N-term methylation site GFxxxE
        1.7    8.7   6.9        1.6    8.8   3.7    1.9  2  PF12661.2 Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF13544.1  Type IV pilin N-term methylation site GFxxxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.4e-05       0.3       3      21 ..      99     117 ..      98     117 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.4e-05
    PF13544.1   3 rrrrrrrrrrqrGFTLiEl 21 
                  ++r+r+ ++++rG TL+E+
  MMETSP0890-20130614|36708_1  99 NHRKRKHHSANRGQTLVEI 117
                  57899999**********6 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   9.3e+03       8      12 ..      11      15 ..      11      15 .. 0.88
   2 ?    8.8   3.7   0.00024       1.6       2      13 .]      25      36 ..      24      36 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.4
    PF12661.2  8 yTGdn 12
                 y+G+n
  MMETSP0890-20130614|36708_1 11 YSGKN 15
                 99*97 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00024
    PF12661.2  2 CqCppGyTGdnC 13
                 C C+ G+TG  C
  MMETSP0890-20130614|36708_1 25 CNCDHGWTGSAC 36
                 *********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.35s 00:00:00.84 Elapsed: 00:00:00.87
# Mc/sec: 589.45
//
Query:       MMETSP0890-20130614|36719_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-13   49.9   0.9      5e-13   48.9   0.0    1.8  2  PF09229.6  Activator of Hsp90 ATPase, N-terminal
     0.0042   17.3   3.5     0.0042   17.3   2.4    1.8  2  PF03234.9  Cdc37 N terminal kinase binding
  ------ inclusion threshold ------
      0.062   12.7   2.0        9.2    5.7   0.0    2.8  2  PF03522.10 K-Cl Co-transporter type 1 (KCC1)
       0.46   10.3   8.1       0.93    9.3   5.6    1.5  1  PF12154.3  Glycoprotein B N-terminal antigenic domain of HCMV


Domain annotation for each model (and alignments):
>> PF09229.6  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.47   1.6e+03      83     103 ..      13      31 ..       6      43 .. 0.53
   2 !   48.9   0.0   1.5e-16     5e-13       1     113 [.     118     225 ..     118     234 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.47
                  EECCCCTT----EE--SS-SH CS
    PF09229.6  83 lsseneeedyeieikvtdkkk 103
                  +s+e  e+d + ++++++++k
  MMETSP0890-20130614|36719_1  13 ISDE--EDDTKTSVTKKSSTK 31 
                  3444..444444444444333 PP

  == domain 2    score: 48.9 bits;  conditional E-value: 1.5e-16
                  -EE-HHHHHHHHHHHHHT-EE.E-SSEEEEEEEEE.EE-EEEEEE----EEEEEEEEEEEEEEEEETT---EE----EEEEEEECCCCTT----EE--SS-SHHHHHHHHTTT CS
    PF09229.6   1 eKdatkwakeklkellknlkvkedeeskikitevskveGdasvsqrKGKkiflfelklklewegekkeeeekkvkGtveipelsseneeedyeieikvtdkkkeskelkallk 113
                  e+ +++  ke+ ++ +k++k  e  ++ ++++evs v+Gdasv +++GK++ + ++++++e ++    +++ k+k t++i+e+++++  e +e+   ++d+ +++ +  a+l+
  MMETSP0890-20130614|36719_1 118 ERSVMPFVKERVEKVCKSTKH-EFIKGAVHVEEVS-VSGDASVGIIRGKPRRILDINIQVELQIL--LGDS-KYKATIHINEFTHDALSESIECILALKDDASIPTDRAAMLR 225
                  78999999************7.99999********.***************************99..3343.58*************9*******999999998887666665 PP

>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.4   1.2e-06    0.0042       1      28 [.       2      28 ..       2      38 .. 0.91
   2 ?   -3.6   0.0       3.1   1.1e+04      82      98 ..     120     136 ..     105     149 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.2e-06
    PF03234.9  1 aidYskWdkiElSDDsDvevHPNvDkkS 28
                 +idYsk dki++SD +D ++   v kkS
  MMETSP0890-20130614|36719_1  2 PIDYSKFDKIDISDEED-DTKTSVTKKS 28
                 69***************.*999999998 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.1
    PF03234.9  82 kvlkklneeadkedkas 98 
                  +v+ +++e+ +k  k++
  MMETSP0890-20130614|36719_1 120 SVMPFVKERVEKVCKST 136
                  44444444444433333 PP

>> PF03522.10  K-Cl Co-transporter type 1 (KCC1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.6    0.0042        14      15      24 ..      14      23 ..      13      26 .. 0.86
   2 ?    5.7   0.0    0.0027       9.2       3      14 ..     219     230 ..     218     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0042
   PF03522.10 15 SDedeeteaa 24
                 SDe+++t + 
  MMETSP0890-20130614|36719_1 14 SDEEDDTKTS 23
                 9******985 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0027
   PF03522.10   3 DRnSiLRLtSvg 14 
                  DR  +LRL+ +g
  MMETSP0890-20130614|36719_1 219 DRAAMLRLELIG 230
                  9********887 PP

>> PF12154.3  Glycoprotein B N-terminal antigenic domain of HCMV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.6   0.00027      0.93       6      26 ..      22      42 ..      19      43 .. 0.95

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00027
    PF12154.3  6 TsraassqsgSVSqhvTSSqt 26
                 Ts++ +s + SVS++ TSS t
  MMETSP0890-20130614|36719_1 22 TSVTKKSSTKSVSKKATSSST 42
                 9******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       727  (0.0531744); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.80
# Mc/sec: 811.77
//
Query:       MMETSP0890-20130614|36736_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       115  (0.00841135); expected 273.4 (0.02)
Passed bias filter:                      112  (0.00819193); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.39s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 145.23
//
Query:       MMETSP0890-20130614|36740_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.37s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 432.07
//
Query:       MMETSP0890-20130614|36743_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.1   0.0     0.0028   17.1   0.0    1.5  1  PF00626.17 Gelsolin repeat


Domain annotation for each model (and alignments):
>> PF00626.17  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.1e-07    0.0028      16      75 ..      46     105 ..      41     106 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.1e-07
                  BTTSEEEEEESSEEEEEEH--SHHHHHHHHHHHHHHHHHHCTSTTEEEEEEEHHHHHHHH CS
   PF00626.17  16 esgdvyLLdtgftiylWiGkgssqeeknfaadlaaeldseerfplpelirevqgkeparF 75 
                   ++ + ++d++f++++W+Gk++ +   ++a   a  + +  r+p +++ ++ q++e  +F
  MMETSP0890-20130614|36743_1  46 HNDRAVVVDAHFQVMVWLGKNAKRRDAALAKRIAFAYAAATRSPPCRVRVVRQNHECSHF 105
                  56777899*************7777777777777777779****************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      379  (0.0277209); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.85
# Mc/sec: 840.13
//
Query:       MMETSP0890-20130614|36747_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    6.5  13.9        5.7    6.4   9.6    1.1  1  PF10278.4 Mediator of RNA pol II transcription subunit 19
        9.5    4.5  11.1        9.8    4.4   7.7    1.0  1  PF07909.6 Protein of unknown function (DUF1663)


Domain annotation for each model (and alignments):
>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.6   0.00084       5.7     134     169 ..       7      42 ..       1      52 [. 0.59

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00084
    PF10278.4 134 seteegfekkkkkkkkedDkerkkkkkekkkkkkrk 169
                  ++     e+++  kkk+dD+erkk+ +   +k++ +
  MMETSP0890-20130614|36747_1   7 DDDSIESEERHNAKKKKDDNERKKEEEGGIEKDDEN 42 
                  22233456777777778******9987544433222 PP

>> PF07909.6  Protein of unknown function (DUF1663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.7    0.0014       9.8     201     248 ..       4      49 ..       1      53 [. 0.90

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0014
    PF07909.6 201 edaarcilkeeerrdlivskerldrrrleaGeiakedfeeekGretad 248
                  +d   + ++ eer ++   k+  +r++ e+G i k d  e+k +e  d
  MMETSP0890-20130614|36747_1   4 DDDDDDSIESEERHNAKKKKDDNERKKEEEGGIEKDD--ENKDEEIED 49 
                  57778999*****************************..999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1301  (0.095158); expected 273.4 (0.02)
Passed bias filter:                      683  (0.0499561); expected 273.4 (0.02)
Passed Vit filter:                       130  (0.00950848); expected 13.7 (0.001)
Passed Fwd filter:                        30  (0.00219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:01.33
# Mc/sec: 100.90
//
Query:       MMETSP0890-20130614|36744_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-14   51.2   0.0    1.5e-13   50.2   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.1e-17   1.5e-13       7      76 ..      31     110 ..      26     112 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 1.1e-17
                  ---EEEE-TTS-HHHHHHHHHHHHTTTS..SEEEESTTC-S---STTESEEEESSSBSSHHH........HHHH------ CS
   PF00271.26   7 gikvailhgelpqnereeileqfnagks..kvlvatnvaerGidlpdvnvVinfdlprsvts........yiQriGRtgR 76 
                  + +v++lh++l +  r++ +    + +    +lvat++a+rG+dlp+v++V +++lpr +          y++r GR+gR
  MMETSP0890-20130614|36744_1  31 HSRVLALHSDLAPAARKRAVYHLSNTEQysTILVATDIAARGLDLPGVDLVLQLGLPRQRGRdgtldtdlYAHRSGRAGR 110
                  458999********9999999999888889**************************77777777777788********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.57
# Mc/sec: 1458.47
//
Query:       MMETSP0890-20130614|36749_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0058   16.7  23.8        3.3    8.0   0.0    7.3  7  PF02415.12 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat


Domain annotation for each model (and alignments):
>> PF02415.12  Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00024       3.3       1      26 [.     319     337 ..     319     338 .. 0.92
   2 ?    2.2   0.0     0.017   2.3e+02       2      26 ..     350     364 ..     349     366 .. 0.85
   3 !    5.2   0.0    0.0019        25       1      25 [.     375     389 ..     375     390 .. 0.91
   4 !    4.0   0.5    0.0045        62      20      28 .]     419     427 ..     417     427 .. 0.91
   5 !    5.1   0.7    0.0021        29       3      27 ..     438     454 ..     436     455 .. 0.89
   6 !    3.5   0.2    0.0065        89       3      23 ..     466     491 ..     464     496 .. 0.85
   7 ?   -1.6   0.0      0.28   3.9e+03       4      13 ..     578     587 ..     577     610 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00024
   PF02415.12   1 sitFsnNtatvsftptpaaggGGAIy 26 
                  s++Fs N a         +g+GGAI 
  MMETSP0890-20130614|36749_1 319 SCIFSRNVA-------LWDGSGGAIS 337
                  689******.......9********6 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.017
   PF02415.12   2 itFsnNtatvsftptpaaggGGAIy 26 
                  ++F +Nta            GGA +
  MMETSP0890-20130614|36749_1 350 TRFRDNTA----------WIGGAVF 364
                  68999***..........9999988 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0019
   PF02415.12   1 sitFsnNtatvsftptpaaggGGAI 25 
                  + +F+ N a          + GGAI
  MMETSP0890-20130614|36749_1 375 NASFTRNLA----------VWGGAI 389
                  579******..........*****9 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.0045
   PF02415.12  20 ggGGAIyae 28 
                  g+GGAI+a+
  MMETSP0890-20130614|36749_1 419 GQGGAICAT 427
                  79*****97 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.0021
   PF02415.12   3 tFsnNtatvsftptpaaggGGAIya 27 
                  +F +N++        ++g G AIy+
  MMETSP0890-20130614|36749_1 438 IFRYNSV--------SSGRGAAIYS 454
                  7999999........69*******7 PP

  == domain 6    score: 3.5 bits;  conditional E-value: 0.0065
   PF02415.12   3 tFsnNtatvsf.....tptpaaggGG 23 
                  ++++Nta +s      +p  ++ggGG
  MMETSP0890-20130614|36749_1 466 IVEYNTAISSIkdetaPPCFKTGGGG 491
                  7899***9999***999999999999 PP

  == domain 7    score: -1.6 bits;  conditional E-value: 0.28
   PF02415.12   4 FsnNtatvsf 13 
                  +snN a+ +f
  MMETSP0890-20130614|36749_1 578 VSNNGAFKNF 587
                  5999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.38s 00:00:01.42 Elapsed: 00:00:01.01
# Mc/sec: 1575.43
//
Query:       MMETSP0890-20130614|36755_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   16.1   0.1     0.0083   15.6   0.0    1.2  1  PF13414.1 TPR repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     6e-07    0.0083       2      23 ..      67      88 ..      66      89 .] 0.94

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6e-07
    PF13414.1  2 nAealkelGnalfkegdydeAi 23
                 +Ae+ + +Gn++f+++++d+A+
  MMETSP0890-20130614|36755_1 67 LAEEQRKRGNVFFEKNEWDKAV 88
                 79*******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.71
# Mc/sec: 300.39
//
Query:       MMETSP0890-20130614|36772_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.34s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 344.48
//
Query:       MMETSP0890-20130614|36787_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-44  150.3   0.0    3.2e-44  150.0   0.0    1.1  1  PF00071.17 Ras family
    1.1e-18   67.7   0.0      2e-18   66.8   0.0    1.5  1  PF08477.8  Miro-like protein
    4.7e-09   35.6   0.0    6.7e-09   35.0   0.0    1.3  1  PF00025.16 ADP-ribosylation factor family
    0.00029   20.2   0.0     0.0025   17.1   0.0    2.0  1  PF00009.22 Elongation factor Tu GTP binding domain
     0.0003   21.1   0.0    0.00055   20.2   0.0    1.5  1  PF13191.1  AAA ATPase domain
     0.0009   19.1   0.0     0.0031   17.4   0.0    1.7  2  PF01926.18 50S ribosome-binding GTPase
     0.0048   16.0   0.0      0.011   14.8   0.0    1.5  2  PF09439.5  Signal recognition particle receptor beta subunit
     0.0069   15.4   0.0      0.012   14.6   0.0    1.5  1  PF03193.11 Protein of unknown function, DUF258
     0.0077   15.7   0.0      0.017   14.5   0.0    1.6  1  PF13479.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.021   14.8   0.0    1.6  1  PF13401.1  AAA domain
      0.019   13.9   0.0      0.033   13.2   0.0    1.4  1  PF04670.7  Gtr1/RagA G protein conserved region
      0.021   14.3   0.1       0.18   11.3   0.0    2.0  2  PF01637.13 Archaeal ATPase
      0.022   14.2   0.0      0.038   13.4   0.0    1.4  1  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0     3e-47   3.2e-44       1     160 [.       2     168 ..       2     170 .. 0.93

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 3e-47
                  EEEEE-------HHHHHHHHHSSS-SS..-TTTS-EEEEEEEEEET.TEEEEEEEEEE---GGGHHHH.HHHHHT-SEEEEE--TT-HHHHHTHHHHHHHHHHHSTTTSSEEEE---TTGGG..G-SS-HHHHHHHHHHTT.EEE---BTTTTTTHHHHHHHHHHHH CS
   PF00071.17   1 KlvlvGdsavGKtslllrfvedkFkee..yesTigvdfytkeievd.gkevkleiwDTAGqeefkslr.slyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee..kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                  K+v++Gds+vGKtsll+rfv+++F+++  + sTi ++ +++++e+d g+ v+leiwDTAGqe+f+sl+ ++yyr+a g++l+yd  +++s++++  w++++ ++ e+n++++L++ K Dl+   kr++s+e+++++ k+     f etSAkt enve +f +l++++
  MMETSP0890-20130614|36787_1   2 KCVVLGDSGVGKTSLLTRFVKEEFRSTagSRSTISAALLERSVELDdGSIVELEIWDTAGQERFRSLNtPMYYRGAAGAILCYDCCDEDSWKHIPGWYSQLCMMGERNCVVALCASKLDLAIqgKRKISAETASDFVKKEAiRVFRETSAKTGENVEPLFVALATAM 168
                  89**********************98733589*************967889****************6379************************************************986669**************99667*****************999876 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.9e-21     2e-18       1     119 []       2     120 ..       2     120 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.9e-21
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel...lelwdlggreelkkehell.lkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                  k+vv+Gd+gvGK+sll ++v+eef      + ++++ l      v+ d+++   le+wd++g+e++ + + ++  + a++++l yd++de+s +++    ++l+ + +  ++ +v l+++klD
  MMETSP0890-20130614|36787_1   2 KCVVLGDSGVGKTSLLTRFVKEEFRSTAGSRSTISAALLE--RSVELDDGSiveLEIWDTAGQERFRSLNTPMyYRGAAGAILCYDCCDEDSWKHIPGWYSQLCMMGE--RNCVVALCASKLD 120
                  89***********************555555555555554..555555555569**************999999*********************9888888887774..67999******98 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   6.4e-12   6.7e-09      16     171 ..       2     164 ..       1     168 [. 0.78

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 6.4e-12
                  EEEEE--TT---HHHHHHHHHS-EEE...E-S--S-EE..EEEEE...TTEEEEEEE----GGGGGCGG.GGCTTECEEEEEEETT-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSEEEE.EEBTTTTB--HHHHHHH CS
   PF00025.16  16 rilllGLDnaGKtTilkklkleelvt...tvPTigfnv..eelei...knlkftvwDvGGqeklRplWk.nYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiq.kcsavkgeglkeglewl 171
                  ++++lG  + GKt +l+++ +ee+ +      Ti      +++e      +++++wD  Gqe+ R+l    Y++   + i + D++d++  ++     ++l  + e +++++ + a K Dl+ +  +++++++ + + +k k+ + ++ ++sa +ge+++  +  l
  MMETSP0890-20130614|36787_1   2 KCVVLGDSGVGKTSLLTRFVKEEFRStagSRSTISAALleRSVELddgSIVELEIWDTAGQERFRSLNTpMYYRGAAGAILCYDCCDEDSWKHIPGWYSQLCMMGE-RNCVVALCASKLDLAIQ-GKRKISAETASDFVK-KEAIRVFrETSAKTGENVEPLFVAL 164
                  89*********************99933334565554411334444445689**************98648**********************9999999998887.5666777899***9765.456777777777788.6777776368999999988776655 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.4e-06    0.0025      55     184 ..      34     166 ..       1     170 [. 0.74

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.4e-06
                  BBSSEEEEEE...T.ESCEEEEEEE----GGGHHHHHHH.HHT-SEEEEEEETTS-....S-HHHHHHHHHHHHTT--EEEEEE-TTSTCHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHHHH CS
   PF00009.22  55 Tiksaaisle...ketkkrlinliDtPGHvdFskevirg.lrvlDgavlvvdaveG....vepqTeevlrlakklgvkiivviNKiDrveaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleaive 184
                  Ti++a  + +   ++++  ++ + Dt G + F +  +    r + ga+l  d+ +       p     l ++ + ++ + ++  K+D++ +  ++i  e  +++++k+  +      +  +Sa++ge++++L+ a+ +
  MMETSP0890-20130614|36787_1  34 TISAALLERSvelDDGSIVELEIWDTAGQERFRSLNTPMyYRGAAGAILCYDCCDEdswkHIPGWYSQLCMMGERNCVVALCASKLDLAIQGKRKISAETASDFVKKEAIRV-----FRETSAKTGENVEPLFVALAT 166
                  3333333333434488889999**********886555449***********9988665555555666666666677788899*********************99997774.....999***********9988876 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.2e-07   0.00055      26      52 ..       3      29 ..       2      70 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.2e-07
    PF13191.1 26 llvtGpsGiGKSsLlrelakpillerl 52
                 ++v+G+sG+GK+sLl+++ k+ +++ +
  MMETSP0890-20130614|36787_1  3 CVVLGDSGVGKTSLLTRFVKEEFRSTA 29
                 68***************9888777633 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06    0.0031       1      55 [.       2      62 ..       2     102 .. 0.69
   2 ?   -1.7   0.0       2.4   2.5e+03      25      41 ..     167     183 ..     148     195 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.9e-06
                 EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SE.EEEETTE.....EEEEE---S CS
   PF01926.18  1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.te.nevkkek.....iilvDtPGi 55
                 +++++G + vGK++L+ + ++e+  ++++    T +     ++v+ +      ++++Dt+G 
  MMETSP0890-20130614|36787_1  2 KCVVLGDSGVGKTSLLTRFVKEEF-RSTAGSRSTISAaLLeRSVELDDgsiveLEIWDTAGQ 62
                 589*****************7654.444444445554233244433324455458******3 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.4
                  TEETS-TT-SSSESEEE CS
   PF01926.18  25 akvsdypgtTrditene 41 
                  a v++ + tT d++ n+
  MMETSP0890-20130614|36787_1 167 AMVTQAAKTTADVQSNT 183
                  45556666666664433 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     1e-05     0.011       7      64 ..       4      67 ..       2      84 .. 0.74
   2 ?   -2.7   0.0       2.4   2.5e+03      34      43 ..     170     179 ..     148     194 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1e-05
                 EEE--TT---HHHHHHHHHSS-------SS-EEETT-.......---..--EEEE----GGGGH CS
    PF09439.5  7 llvGlsdsGKTslftrLttdsvkktvtSqessaalkv....ksekgk..kltliDfPGheklrq 64
                 +++G s  GKTsl+tr  ++++++t  S  + +a+ +    + ++g+  +l++ D  G+e++r+
  MMETSP0890-20130614|36787_1  4 VVLGDSGVGKTSLLTRFVKEEFRSTAGSRSTISAALLersvELDDGSivELEIWDTAGQERFRS 67
                 678999*******************999854444333233344455422667889999999986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.4
                  -SS-EEETT- CS
    PF09439.5  34 Sqessaalkv 43 
                   q+++++++v
  MMETSP0890-20130614|36787_1 170 TQAAKTTADV 179
                  2222233333 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-05     0.012      39      63 ..       4      28 ..       2      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-05
                 EEE-------HHHHHHH-------- CS
   PF03193.11 39 vlvGqSGvGKSsLinallpeldlkv 63
                 v++G SGvGK+sL+ ++++e+  ++
  MMETSP0890-20130614|36787_1  4 VVLGDSGVGKTSLLTRFVKEEFRST 28
                 899************9999876555 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-05     0.017       5      23 ..       2      20 ..       1      28 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.7e-05
    PF13479.1  5 kvliYGkpGiGKTslaktl 23
                 k +++G++G+GKTsl++++
  MMETSP0890-20130614|36787_1  2 KCVVLGDSGVGKTSLLTRF 20
                 889************9987 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     2e-05     0.021       8      28 ..       4      24 ..       3     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-05
    PF13401.1  8 vvtGesGvGKTtllrrlarql 28
                 vv G sGvGKT ll r++++ 
  MMETSP0890-20130614|36787_1  4 VVLGDSGVGKTSLLTRFVKEE 24
                 899**************9974 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.033       1      63 [.       2      67 ..       2      77 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.1e-05
    PF04670.7  1 klLLmGksgsGKtSmrsiiFsnylardtlrLgaTi..dveqshvrf..lgnlklnlwDcgGqeefve 63
                 k +++G sg GKtS+    F +   r t    +Ti   + + +v++   ++++l++wD+ Gqe+f +
  MMETSP0890-20130614|36787_1  2 KCVVLGDSGVGKTSLLTR-FVKEEFRSTAGSRSTIsaALLERSVELddGSIVELEIWDTAGQERFRS 67
                 56899*********8654.555566666666666622333444443115789***********9965 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.18      24      44 ..       4      24 ..       2      48 .. 0.89
   2 ?    0.8   0.0      0.28   2.9e+02      72     113 ..     123     164 ..     106     174 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00017
                 EEE--TT---HHHHHHHHHH- CS
   PF01637.13 24 viyGprrsGKTaLlkeileel 44
                 v++G  ++GKT+Ll ++++e 
  MMETSP0890-20130614|36787_1  4 VVLGDSGVGKTSLLTRFVKEE 24
                 89****************986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.28
                  .HHHS-SHHHHHHHHT....-----TS-GG.G--HHHHHHHH CS
   PF01637.13  72 eeekkklakalgialpkaeleeilkkksklvflaleelleal 113
                   + k+k++ ++++ + k e++++++++s++  +++e l+ al
  MMETSP0890-20130614|36787_1 123 IQGKRKISAETASDFVKKEAIRVFRETSAKTGENVEPLFVAL 164
                  566777777777777777888888877777777777777666 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.038       3      23 ..       3      23 ..       2      34 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-05
    PF05729.7  3 vilqGeaGsGKTtLlqklasa 23
                 +++ G++G+GKT Ll +++++
  MMETSP0890-20130614|36787_1  3 CVVLGDSGVGKTSLLTRFVKE 23
                 689**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      519  (0.0379608); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.42s 00:00:00.98 Elapsed: 00:00:01.19
# Mc/sec: 412.82
//
Query:       MMETSP0890-20130614|36793_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   46.6   3.3    3.7e-12   45.7   2.3    1.5  1  PF01585.18 G-patch domain
    4.7e-09   35.8   0.7    1.2e-08   34.5   0.5    1.7  1  PF12656.2  DExH-box splicing factor binding site


Domain annotation for each model (and alignments):
>> PF01585.18  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   2.3   5.4e-16   3.7e-12       2      43 ..     143     184 ..     142     186 .. 0.96

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 5.4e-16
   PF01585.18   2 sniGfkmLakmGWkpGqGLGkneqGivePieakikkdrkGlG 43 
                  +n+G +mL+ mGW++G+GLG+++ G++ePi   ++ d +G+G
  MMETSP0890-20130614|36793_1 143 ENVGKQMLRGMGWQEGTGLGSQGTGRAEPIADAGQSDTVGIG 184
                  79**************************************99 PP

>> PF12656.2  DExH-box splicing factor binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.5   1.7e-12   1.2e-08      31      75 ..     143     187 ..     124     191 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.7e-12
    PF12656.2  31 eeFGaAlLrGmGWkegqgigkkkkgsvkpeepkrRpkglGLGakp 75 
                  e+ G+++LrGmGW+eg g g++ +g+ +p+    + +++G+G +p
  MMETSP0890-20130614|36793_1 143 ENVGKQMLRGMGWQEGTGLGSQGTGRAEPIADAGQSDTVGIGSRP 187
                  889***************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.57
# Mc/sec: 871.78
//
Query:       MMETSP0890-20130614|36800_1  [L=860]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.25u 0.40s 00:00:01.65 Elapsed: 00:00:00.77
# Mc/sec: 2676.45
//
Query:       MMETSP0890-20130614|36806_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-13   49.4   0.0    3.2e-12   46.7   0.0    2.1  2  PF09369.5 Domain of unknown function (DUF1998)


Domain annotation for each model (and alignments):
>> PF09369.5  Domain of unknown function (DUF1998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.3e-16   3.2e-12      22      84 .]       6      67 ..       1      67 [. 0.88
   2 ?    0.0   0.0     0.084   1.1e+03      11      47 ..     129     163 ..     126     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2.3e-16
    PF09369.5 22 geeilpekeeeeeragillydaaeGgaGvlgrlaepkaleelleaAlelleeCdC..eagCysCl 84
                  e ++ ++ ++ ++a+i+++d+ +Gg Gv+++++++  +  ++++Al+l++eC+C  ++gC+sCl
  MMETSP0890-20130614|36806_1  6 AEHVYISQ-KRPRPARIIIFDTRPGGIGVAHAIFRR--IYAVISEALRLITECPChaQSGCPSCL 67
                 45556654.4789*********************99..*****************988******7 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.084
    PF09369.5  11 elelgleeselgeeilpekeeeeeragillydaaeGg 47 
                  +le+  ++++++ +++ ++  ++ r++ +l daa  g
  MMETSP0890-20130614|36806_1 129 PLEISANQNDITRRTRRRA--SALRRAAMLDDAATNG 163
                  6778888999988888876..4677777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       394  (0.028818); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 625.00
//
Query:       MMETSP0890-20130614|36815_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-12   47.6   0.0    1.8e-12   47.0   0.0    1.3  1  PF00583.19 Acetyltransferase (GNAT) family
    4.4e-05   23.4   0.0    7.3e-05   22.7   0.0    1.4  1  PF13508.1  Acetyltransferase (GNAT) domain
    8.7e-05   22.0   0.0    0.00025   20.5   0.0    1.7  1  PF08445.5  FR47-like protein
     0.0026   17.5   0.0     0.0047   16.6   0.0    1.3  1  PF13523.1  Acetyltransferase (GNAT) domain
     0.0054   16.7   0.0      0.013   15.5   0.0    1.6  1  PF13673.1  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PF00583.19  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   6.4e-16   1.8e-12       6      83 .]     138     246 ..     133     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 6.4e-16
                  EBEEEEEEEEECTTS................CS.............TTEEEEEEEEESGGGTTTT-HHHHHHHHHHHHHH..TTHSEEEEEEETTCHHHHHHHHHTT-E CS
   PF00583.19   6 elvGfaslsvigedg................ra.............ertayieglaVspeyrgqGiGkaLleallekare..rglerielevesgndraiklYeklGFk 83 
                  + vG++ l++ ++dg                 +             +++ yi  l+Vs+++r++Gi+ aLl  +++ a    +g++++ l+v+ +n++a++lY+  G++
  MMETSP0890-20130614|36815_1 138 QAVGALELRIRDTDGtapaalpfldrlrpenKGlntgnkmgipnsiGPRPYISCLCVSSACRRRGIAAALLSVAEHFAGPavWGYDSVFLHVQASNHAALELYKNAGYT 246
                  78999999999999999888888877766550055566677788899*******************************999**************************96 PP

>> PF13508.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.7e-08   7.3e-05      23      78 ..     183     246 ..     138     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.7e-08
    PF13508.1  23 dgetayiggvavdpeyrgkGlGskllnklkeey.....gekpivllarp...arkkFYeklGFk 78 
                  +g + yi++++v+++ r++G++++ll+ ++ ++     g ++++l+++    a+++ Y++ G++
  MMETSP0890-20130614|36815_1 183 IGPRPYISCLCVSSACRRRGIAAALLSVAEHFAgpavwGYDSVFLHVQAsnhAALELYKNAGYT 246
                  44556************************88874333357888998754233799*******96 PP

>> PF08445.5  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   9.3e-08   0.00025      23      80 ..     188     248 ..     184     254 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 9.3e-08
                  -----EE-GGG--------HHHHHHHHHH-....--S-EEEEEETT-HHHHHHHHH---B-- CS
    PF08445.5  23 elgalqvlpehrrrGlgsrlvkalakeiae....rgktvllvvvasNtpsirlyeklGfeki 80 
                  +++ l+v    rrrG +  l  ++a++ a       + v+l+v+asN+++ +ly+  G++ i
  MMETSP0890-20130614|36815_1 188 YISCLCVSSACRRRGIAAALL-SVAEHFAGpavwGYDSVFLHVQASNHAALELYKNAGYTYI 248
                  6999*************9874.45555543212245779********************876 PP

>> PF13523.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.7e-06    0.0047      82     139 ..     190     248 ..     187     256 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.7e-06
    PF13523.1  82 hllvaeprargkgltrawlrsllhylfadp.rtervvvepdvdNkrmialleraGFekv 139
                  ++l++ ++ r +g++ a+l  + h++ +    ++ v + + ++N+ +++l++ aG+++ 
  MMETSP0890-20130614|36815_1 190 SCLCVSSACRRRGIAAALLSVAEHFAGPAVwGYDSVFLHVQASNHAALELYKNAGYTYI 248
                  689************************9888*************************986 PP

>> PF13673.1  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.6e-06     0.013      66     117 .]     188     245 ..     175     245 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.6e-06
    PF13673.1  66 slsllyvrpeargrGigraLldaieaea.rk..gikvltte...asklarplyerlGf 117
                  ++s l+v+ ++r+rGi+ aLl  +e  a ++  g++++ ++   +++ a  ly+  G+
  MMETSP0890-20130614|36815_1 188 YISCLCVSSACRRRGIAAALLSVAEHFAgPAvwGYDSVFLHvqaSNHAALELYKNAGY 245
                  4888**********************77566999998888888999999*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.59
# Mc/sec: 1299.72
//
Query:       MMETSP0890-20130614|36816_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-13   48.1   0.0      5e-05   23.1   0.0    2.7  2  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    6.7e-10   38.3   0.1     0.0054   16.2   0.0    3.9  3  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    2.5e-08   33.5   0.0    2.5e-05   23.9   0.0    2.4  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.1e-08     5e-05       1      69 []      57     133 ..      57     133 .. 0.81
   2 !   22.3   0.0   1.9e-08   8.5e-05       1      69 []     187     267 ..     187     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.1e-08
    PF14259.1   1 lyvrglppsvte.edlreffsp..ygk........vegvriprnkdgrgrgfAfvefeseedAqkalkklnlvlkgrtir 69 
                  +yv+++p+s+   + l+e+f++  + +        v++v+i     g +  +Af+ef +e  A+ al  ++  ++ r +r
  MMETSP0890-20130614|36816_1  57 VYVGNIPSSAHTaSALTELFENlmA-TvpnakkpaVTSVQIGTA--GGSQLYAFIEFVDESLASTALLFHGFTVGERCLR 133
                  8******986555*********651.333444577788888754..667889*******************999999876 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.9e-08
    PF14259.1   1 lyvrglpp.svteedlreffspygk...............vegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvlkgrtir 69 
                  lyv++l   +vt+  lr+f+s++ +               v +v++ +        fAfvef +e+ A  al   n + + g+ +r
  MMETSP0890-20130614|36816_1 187 LYVGNLAAgQVTAFMLRDFLSRHIRevlrantndalttpvVLNVELQGG-----GKFAFVEFHDEDMATLALHIFNkCEFCGKQLR 267
                  79****9869************554444445555566666678888885.....89******************999*****9986 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0057       1      70 []      57     133 ..      57     133 .. 0.79
   2 ?   -0.3   0.0      0.17   7.6e+02       1      20 [.     187     207 ..     187     215 .. 0.78
   3 !   16.2   0.0   1.2e-06    0.0054      40      70 .]     237     267 ..     226     267 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-06
                  EEEESSTTTS.SHHHHHHHHCT.CTCEEEEEEEES......TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17   1 lfVgnLppdv.teeeLkelFsk.fGpiesiklvrd......etgrskgfafVeFeseedaekAlealngkklggrelk 70 
                  ++Vgn+p+++ t + L elF++    + ++k +          g s+ +af+eF +e+ a  Al   +g ++g r l+
  MMETSP0890-20130614|36816_1  57 VYVGNIPSSAhTASALTELFENlMATVPNAKKPAVtsvqigTAGGSQLYAFIEFVDESLASTALL-FHGFTVGERCLR 133
                  789999766547788999999877777666555444454556799999*****************.******999875 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.17
                  EEEESS.TTTSSHHHHHHHHC CS
   PF00076.17   1 lfVgnL.ppdvteeeLkelFs 20 
                  l+VgnL    vt   L++++s
  MMETSP0890-20130614|36816_1 187 LYVGNLaAGQVTAFMLRDFLS 207
                  89****666777777777765 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 1.2e-06
                  -EEEEEESSHHHHHHHHHHHTTEBETTEBEE CS
   PF00076.17  40 gfafVeFeseedaekAlealngkklggrelk 70 
                  +fafVeF++e+ a+ Al   n+ ++ g++l+
  MMETSP0890-20130614|36816_1 237 KFAFVEFHDEDMATLALHIFNKCEFCGKQLR 267
                  7*********************999999885 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00086       3.9      21      53 ..     103     134 ..      91     135 .. 0.83
   2 !   23.9   0.0   5.5e-09   2.5e-05      20      53 ..     235     268 ..     226     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00086
    PF13893.1  21 ggqAfvefdtveaArkakeylngvklygktLkv 53 
                  + +Af+ef +++ A +a+  ++g   + + L++
  MMETSP0890-20130614|36816_1 103 QLYAFIEFVDESLASTALL-FHGFTVGERCLRI 134
                  689*************995.8888888888876 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 5.5e-09
    PF13893.1  20 kggqAfvefdtveaArkakeylngvklygktLkv 53 
                  +g +Afvef++++ A  a+  +n++ ++gk+L+v
  MMETSP0890-20130614|36816_1 235 GGKFAFVEFHDEDMATLALHIFNKCEFCGKQLRV 268
                  469******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.61
# Mc/sec: 1151.04
//
Query:       MMETSP0890-20130614|36827_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   24.8   0.1    1.3e-05   24.6   0.0    1.1  1  PF00107.21 Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.038   13.1   0.1      0.043   12.9   0.1    1.0  1  PF00977.16 Histidine biosynthesis protein
      0.046   13.3   0.3      0.053   13.1   0.2    1.1  1  PF01012.16 Electron transfer flavoprotein domain
      0.072   12.9   0.0       0.11   12.4   0.0    1.3  1  PF02254.13 TrkA-N domain
      0.079   13.1   0.0      0.095   12.9   0.0    1.2  1  PF13704.1  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.7e-09   1.3e-05      15      69 ..      17      75 ..       7      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.7e-09
                 -EEEEEESSHHHHHHHHH----EEEETTTS-....HHHHHHHHTTT--BSEEEEET-.C CS
   PF00107.21 15 arviavdsseeklelakelGadhvinskded....fvkaireltggkgvdvviecvgag 69
                  r   v+++ee++e +++lGad v+  k+ +     + a+r++ +++ v v++++v+ +
  MMETSP0890-20130614|36827_1 17 VRLLNVVRNEEQAETLRQLGADQVVIIKNAEtdrqGALALRDIAQKEQVSVAFDAVAGP 75
                 667779*******************99999989998889*****************944 PP

>> PF00977.16  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.6e-05     0.043      82     132 ..      23      73 ..      14      78 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
                  --SHHHHHHHHH----EEEESHHHHH-THHHHHHHHH--TTTEEEEEEEEE CS
   PF00977.16  82 IrsledveelleagadkviigtaavknpelikelaekfgsqkivvaiDakk 132
                  +r++e++e+l ++gad+v+i   a ++ +    l +  +++++ va Da +
  MMETSP0890-20130614|36827_1  23 VRNEEQAETLRQLGADQVVIIKNAETDRQGALALRDIAQKEQVSVAFDAVA 73 
                  799************************9999999999999********976 PP

>> PF01012.16  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   1.9e-05     0.053      26      92 ..       8      66 ..       4      77 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.9e-05
                 HHHHHSSSEEEEEE--.-GGGGHHHHHHHHH.----EEEEEE-GGCS---CCCHHHHHHHHHHHH.-S CS
   PF01012.16 26 rlaeklggevtalvvG.pveeaaealrealaamGadevllledpalagydpeatakalaalikkekpd 92
                 rla +  g v +l v  + ee ae+    l ++Gad+v+ +++++ ++  ++    al ++++ke+++
  MMETSP0890-20130614|36827_1  8 RLAGDSAGNVRLLNVVrN-EEQAET----LRQLGADQVVIIKNAETDRQGAL----ALRDIAQKEQVS 66
                 677777778888888745.777777....999************99987777....577777776654 PP

>> PF02254.13  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05      0.11      86     115 ..      13      42 ..       2      43 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.9e-05
                  C-TTSEEEEEESSGGGHHHHHH----EEEE CS
   PF02254.13  86 lnpkkkiiaraqdeenakllkklgadevis 115
                    ++ +    +++ee+a+ l++lgad+v+ 
  MMETSP0890-20130614|36827_1  13 SAGNVRLLNVVRNEEQAETLRQLGADQVVI 42 
                  4556788899******************95 PP

>> PF13704.1  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.5e-05     0.095      12      38 ..      30      56 ..      24      72 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.5e-05
    PF13704.1 12 ahhralgfdriliydndstDgtaeilk 38
                 + +r+lg+d+++i+ n+ tD+  +++ 
  MMETSP0890-20130614|36827_1 30 ETLRQLGADQVVIIKNAETDRQGALAL 56
                 5689****************9988874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      502  (0.0367174); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 259.33
//
Query:       MMETSP0890-20130614|36833_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.74
# Mc/sec: 935.87
//
Query:       MMETSP0890-20130614|36855_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.38s 00:00:00.67 Elapsed: 00:00:00.88
# Mc/sec: 108.93
//
Query:       MMETSP0890-20130614|36861_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   26.9  18.6    1.7e-06   26.9  12.9    1.3  1  PF07690.11 Major Facilitator Superfamily
     0.0011   17.4   1.0     0.0011   17.4   0.7    1.5  2  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  12.9   2.5e-10   1.7e-06      15     175 ..      36     198 ..      19     211 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.5e-10
   PF07690.11  15 lgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllll.fa....sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslgWravFlilailsllaavlvllllpr 175
                  + p+   + a+ +  sp+++g++l++ ++  +++++++G  +d +G+r +  ++ +l++l+ l+l+ f+    + + ++++ + ++ +++ +a  pa  +l    +     +  l+l  a+  ++++++p l g+++ +++g +++  ++a+++l+++ l ll  p+
  MMETSP0890-20130614|36861_1  36 IVPV---LSARLFDNSPTAAGLVLSAAAISGFVGAPIGGICTDSIGPRATAAFCGFLSGLS-LILIpFTlldsQYSRYAFVTAIAMWSAFVSAQGPALTSLGQMKAQIGAESTSLALPRAAGDAAFLITPFLLGAVTdAHIGPQGSECAVAGFLLVVGALSLLATPA 198
                  3333...44666889**********************************************.66666755565335557*******************9999999999**************************************999999999998864444443 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   1.7e-07    0.0011      44      98 ..      48     102 ..      13     122 .. 0.83
   2 ?   -2.8   0.0      0.23   1.5e+03      80      98 ..     180     198 ..     158     210 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.7e-07
   PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaaka 98 
                  s +  gl+ s++ + +++G+ ++g+++d +G + + +++++l+  + +l+ ++  
  MMETSP0890-20130614|36861_1  48 SPTAAGLVLSAAAISGFVGAPIGGICTDSIGPRATAAFCGFLSGLSLILIPFTLL 102
                  455679****************************************999998765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.23
   PF00083.19  80 lvalvlfvigavlqaaaka 98 
                  +va++l+v+ga+   a++a
  MMETSP0890-20130614|36861_1 180 AVAGFLLVVGALSLLATPA 198
                  4667777777766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 735.78
//
Query:       MMETSP0890-20130614|36873_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 252.95
//
Query:       MMETSP0890-20130614|36882_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       380  (0.027794); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 829.27
//
Query:       MMETSP0890-20130614|36901_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.37s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 262.46
//
Query:       MMETSP0890-20130614|36911_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.0   9.7    8.9e-06   25.0   2.2    3.0  2  PF12799.2  Leucine Rich repeats (2 copies)
    0.00069   19.2   8.7     0.0074   15.9   2.7    2.6  3  PF13855.1  Leucine rich repeat
  ------ inclusion threshold ------
      0.057   13.5   8.8          4    7.9   0.1    4.9  5  PF13504.1  Leucine rich repeat
       0.29   11.1   8.9          2    8.6   2.0    3.8  3  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   2.2   2.6e-09   8.9e-06       3      43 ..      81     120 ..      79     121 .. 0.95
   2 !   14.8   0.3   4.2e-06     0.014       1      37 [.     124     163 ..     124     171 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.6e-09
    PF12799.2   3 LevLdLsnNnIkdlppelanLpnLktLnLsnNpisdlsaLa 43 
                  L++L+L++N++++  + + +L++L +L Ls N++ +++ L+
  MMETSP0890-20130614|36911_1  81 LRTLSLRRNQLTNCRH-IPKLSSLNELELSENRLVKIDGLD 120
                  9***************.******************999986 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.2e-06
    PF12799.2   1 tnLevLdLsnNnIkdlppe...lanLpnLktLnLsnNpis 37 
                  ++L vL L +N++ dl+     l+ L+ L +L L+nNp+ 
  MMETSP0890-20130614|36911_1 124 PKLDVLALESNQLDDLKSIlaaLSPLQELAELRLANNPCA 163
                  68999**********998645588899***********85 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1     0.003        10      45      61 .]      75      91 ..      65      91 .. 0.79
   2 !   15.9   2.7   2.2e-06    0.0074       2      61 .]      80     136 ..      79     136 .. 0.88
   3 !   14.3   2.3   6.7e-06     0.023       1      59 [.     101     160 ..     101     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.003
    PF13855.1 45 fkgLpsLreLnLsgNrl 61
                 ++gL +Lr L+L+ N+l
  MMETSP0890-20130614|36911_1 75 LEGLSALRTLSLRRNQL 91
                 78888888888888876 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.2e-06
    PF13855.1   2 nLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61 
                   L++L L++N l++ ++    +ls+L +L Ls+n+l  i+  + +  p+L+ L L++N+l
  MMETSP0890-20130614|36911_1  80 ALRTLSLRRNQLTNCRH--IPKLSSLNELELSENRLVKIDG-LDQVAPKLDVLALESNQL 136
                  69*************95..668**************99975.447779999999999987 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 6.7e-06
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksisp..eafkgLpsLreLnLsgN 59 
                  ++L eL Ls Nrl +i+ g  +  ++L vL L +n l  + +   a++ L+ L eL L +N
  MMETSP0890-20130614|36911_1 101 SSLNELELSENRLVKID-GLDQVAPKLDVLALESNQLDDLKSilAALSPLQELAELRLANN 160
                  589*************8.466666*************888662247*************99 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0012         4       2      14 ..      80      92 ..      79      98 .. 0.83
   2 ?    3.7   0.1      0.03     1e+02       2      15 ..     102     115 ..     101     119 .. 0.85
   3 ?    2.3   0.0     0.083   2.8e+02       1      16 [.     124     139 ..     124     141 .. 0.89
   4 ?    0.7   0.0       0.3     1e+03       3      12 ..     152     161 ..     150     164 .. 0.87
   5 ?   -2.3   0.0       2.9   9.8e+03       1       7 [.     182     188 ..     182     191 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0012
    PF13504.1  2 nLkeLdLsgnrLt 14
                  L++L+L++n+Lt
  MMETSP0890-20130614|36911_1 80 ALRTLSLRRNQLT 92
                 69**********9 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.03
    PF13504.1   2 nLkeLdLsgnrLts 15 
                  +L eL Ls nrL  
  MMETSP0890-20130614|36911_1 102 SLNELELSENRLVK 115
                  899********975 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.083
    PF13504.1   1 pnLkeLdLsgnrLtsL 16 
                  p+L +L L +n+L++L
  MMETSP0890-20130614|36911_1 124 PKLDVLALESNQLDDL 139
                  67999********987 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.3
    PF13504.1   3 LkeLdLsgnr 12 
                  L eL+L++n+
  MMETSP0890-20130614|36911_1 152 LAELRLANNP 161
                  889*****96 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 2.9
    PF13504.1   1 pnLkeLd 7  
                  ++L++Ld
  MMETSP0890-20130614|36911_1 182 SSLRVLD 188
                  589**97 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.0   0.00058         2       2      22 .]      81     103 ..      80     122 .. 0.92
   2 ?   -0.7   0.0      0.65   2.2e+03       2      16 ..     126     140 ..     125     152 .. 0.71
   3 ?   -1.9   0.0       1.6   5.6e+03       2      11 ..     152     161 ..     151     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00058
                  ESEEEETSSBCBC...HHHHHHHH CS
   PF00560.28   2 LeeLdLsgNnlts...lppslsnL 22 
                  L++L+L++N+lt+   +p+ ls+L
  MMETSP0890-20130614|36911_1  81 LRTLSLRRNQLTNcrhIPK-LSSL 103
                  9***********7799998.8776 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.65
                  ESEEEETSSBCBCHH CS
   PF00560.28   2 LeeLdLsgNnltslp 16 
                  L +L L +N+l +l 
  MMETSP0890-20130614|36911_1 126 LDVLALESNQLDDLK 140
                  77888999*999854 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.6
                  ESEEEETSSB CS
   PF00560.28   2 LeeLdLsgNn 11 
                  L eL L +N+
  MMETSP0890-20130614|36911_1 152 LAELRLANNP 161
                  679*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       748  (0.0547104); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.39s 00:00:01.21 Elapsed: 00:00:00.94
# Mc/sec: 1236.42
//
Query:       MMETSP0890-20130614|36913_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-12   44.4   0.1    1.6e-11   43.7   0.1    1.3  1  PF09350.5  Domain of unknown function (DUF1992)
  ------ inclusion threshold ------
      0.087   12.1   0.1       0.12   11.7   0.1    1.3  1  PF01988.14 VIT family


Domain annotation for each model (and alignments):
>> PF09350.5  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   2.3e-15   1.6e-11       1      67 [.      45     115 ..      45     120 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 2.3e-15
    PF09350.5   1 laeerIeeAiarGeFdnlpgrGKPLp...lddd.dplideteyflnrilknqgvlPpwielqkeleelrea 67 
                  +ae +I eA+ rG Fdnl+ +GK L    ++d  +  i  t+y++ + l  ++v P  iel  e ee r++
  MMETSP0890-20130614|36913_1  45 VAEHKITEAMRRGVFDNLENAGKALAddaHRDLqSGRIEKTNYIMTSQLAGANVKPLSIELSNECEEKRQE 115
                  69************************88666667789****************************995554 PP

>> PF01988.14  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.7e-05      0.12      66     122 ..      97     153 ..      65     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
   PF01988.14  66 elereqqeverspegeveeladilkakglseetaaqvaeeltakedaldfllkeelg 122
                  +++    e+ +++e++++e+   ++a  ++e  ++ v e+l+++ d+l++l+k ++ 
  MMETSP0890-20130614|36913_1  97 NVKPLSIELSNECEEKRQEIIRRIQAMPMTERRSSPVYEKLSQAADELNVLIKKQHF 153
                  555567899**********************************99999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       532  (0.0389116); expected 273.4 (0.02)
Passed bias filter:                      433  (0.0316706); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.72
# Mc/sec: 622.39
//
Query:       MMETSP0890-20130614|36920_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   37.7   0.0      2e-09   37.2   0.0    1.3  1  PF07859.8 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF07859.8  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.4e-13     2e-09     147     210 ..      35      99 ..      11     100 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.4e-13
                  GGGGGSTTTSGGGSS-..HTT---EEEEEEEE-TTS----HHHHHHHH----EEEEEEE-EE--TC CS
    PF07859.8 147 eadrddplaspllasd..lsglpptlvvvaelDplrdegeayaerlraagvevelveyegmvHgfa 210
                  + + d +l+s ++a d  l+++pp+l+++++ Dpl d++ +++ rlr+a+ve++l +++ ++Hgf+
  MMETSP0890-20130614|36920_1  35 DTSIDSELLS-YYAPDhvLQRFPPILLLCGGIDPLLDDAVDFHTRLRRANVEAHLLVHKSLPHGFL 99 
                  5566777788.5563447**********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.39s 00:00:00.79 Elapsed: 00:00:01.04
# Mc/sec: 329.50
//
Query:       MMETSP0890-20130614|36917_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-11   43.5   0.0    5.8e-11   41.9   0.0    1.8  1  PF09090.6 MIF4G like
    4.3e-11   42.4   0.3    1.2e-10   41.0   0.1    1.8  2  PF09088.6 MIF4G like


Domain annotation for each model (and alignments):
>> PF09090.6  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   8.5e-15   5.8e-11      60     143 ..     396     478 ..     385     572 .. 0.90

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 8.5e-15
                  HHHCTTT-HHHHHHHHHHTHHHHHHH.TSS----HHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHTSGGG.TTTT CS
    PF09090.6  60 lldiGSrSfshvlsalerykekLktleaeseekqlliieavfeyWknspqmifvilDklleyeilspkaivewifseenenqil 143
                  +l+  S + sh++sal+ +++ L  l +++++ + +++e+++ +W++s+ ++ +i D+l++ ++l+p+a v+wif ++n ++ +
  MMETSP0890-20130614|36917_1 396 ALETSSETVSHAMSALDTLASPLGSLTRDDAACEDACLETLIHVWQDSSFHVELIADALVRRSVLTPRALVRWIFYPSN-TTRW 478
                  67788999*******************************************************************9999.5555 PP

>> PF09088.6  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       0.8   5.5e+03      22      40 ..     113     131 ..      98     141 .. 0.76
   2 !   41.0   0.1   1.8e-14   1.2e-10      95     187 ..     223     316 ..     219     322 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.8
    PF09088.6  22 lefnrkecakelldldlfl 40 
                  l  n +e++++l+ l++f 
  MMETSP0890-20130614|36917_1 113 LMSNEQETTRKLSRLEQFC 131
                  5668899999999999885 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 1.8e-14
    PF09088.6  95 llielcklaPeaiapvlgrairllyrrldsldlelidRfvdWfsihLSNFefrw.kWkeWvedl.elealhprkvFikeviekelrlsykdrike 187
                  l +elc++ P++ a+ l+ +i+l++r+ld++d     R+  + ++ L N +f+w  W+ W + + +  + + +++F+ +++++ +rlsy dr+k 
  MMETSP0890-20130614|36917_1 223 LALELCRVIPDT-AKLLANSIELVFRNLDDIDALFAYRLCLFTAHFLNNTKFNWpYWSYWAQATvDALNYDRQRKFVVDLLDHLVRLSYLDRLKC 316
                  5689******86.99***************************************56****9876577788999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       391  (0.0285986); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:00.98
# Mc/sec: 1555.19
//
Query:       MMETSP0890-20130614|36924_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.087   12.2   0.2       0.11   11.8   0.1    1.2  1  PF02814.10 UreE urease accessory protein, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02814.10  UreE urease accessory protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.3e-06      0.11      24      49 ..      18      43 ..      16      47 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.3e-06
   PF02814.10 24 dertksRlrlttddGrelglrLprgt 49
                  +r+k R+r+  + G  ++++L++++
  MMETSP0890-20130614|36924_1 18 VAREKGRMRKNDEKGARIAVDLAKEK 43
                 58********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 198.56
//
Query:       MMETSP0890-20130614|36926_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-43  147.2   0.0      3e-43  146.9   0.0    1.1  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    5.3e-05   22.5   0.0    0.00016   21.0   0.0    1.7  2  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
    0.00035   19.2   0.0     0.0005   18.7   0.0    1.1  1  PF00148.14 Nitrogenase component 1 type Oxidoreductase
    0.00087   18.6   0.0    0.00093   18.5   0.0    1.2  1  PF00389.25 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
  ------ inclusion threshold ------
      0.029   14.1   0.0       0.05   13.3   0.0    1.3  1  PF00670.16 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
      0.029   14.1   0.0      0.047   13.4   0.0    1.3  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase


Domain annotation for each model (and alignments):
>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.3e-46     3e-43       4     178 .]     113     287 ..     110     287 .. 0.93

  Alignments for each domain:
  == domain 1    score: 146.9 bits;  conditional E-value: 1.3e-46
                  HHHHHTTCCCHHHCCCTT--.--GCG-B-.GGGSEEE-B-------HHHHHHHH---EEEE--SS--...HHHH---.EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCCS-TT-EEEE---GGGB-HHHHHHHHHH-TT-EEEES--TTH--GHHHHHHC..STTEEE--S-T CS
   PF02826.14   4 llallrklkeadeevregewssekallgkelsgktvGiiGlGrIGqavakrlkafgmkvlaydrskkkeeeeeelga.evvsleellaesDvvslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeEplpedsplle..lpnviltPHia 178
                  +l + +k++++ ++  e++w   ++++   l++kt+G++G+G I++++ak+ +afgm+++a+ r+k+++e++   ++  v++  el+++sD+v++ lp t +t ++ ++ e+++mk++a++i ++RG+ vde+aL++aL+s++iaga lDvf+eEplp+ s+l++   +++il+ H a
  MMETSP0890-20130614|36926_1 113 ALYFNKKVPRLVANAAENKW---DKFTMPVLKNKTLGLVGYGDIAKHTAKLGRAFGMRIVAVRRNKSASEDDGPDEIfGVEEKLELFKQSDFVVCSLPGTGNTINFCGQPEFSAMKSSAVFISIGRGAAVDEDALCDALESNTIAGAFLDVFKEEPLPKTSRLWSfgPDKLILSSHNA 287
                  578899999***********...999999************************************9988844444444899**********************************************************************************984468999999976 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.81   1.8e+03     115     141 ..      49      75 ..      27     102 .. 0.51
   2 !   21.0   0.0   6.9e-08   0.00016       1      70 [.     139     208 ..     139     213 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.81
                  EEES----HHHHHHH------EEEEEE CS
    PF07991.7 115 vAPkgpGhlvreeykegkGvpaliave 141
                  v P   G++ re  ++   +  l + +
  MMETSP0890-20130614|36926_1  49 VPPGISGSTARELLEKKPEIEWLHSFS 75 
                  344445666666655555555544433 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 6.9e-08
                  HH----EEEE-------HHHHHHHH----EEE------HHHHHHHH---EE--HHHHHHT-SEEEE-S-G CS
    PF07991.7   1 llkekkiaviGyGsqGhaqalnlrdsgldvvvglregsksvekakkdgfevltveeavkkadvvmiliPD 70 
                  +lk+k++ ++GyG  ++  a+  r  g+ +v   r++s+s +   ++ f v +  e+ k++d+v++ +P 
  MMETSP0890-20130614|36926_1 139 VLKNKTLGLVGYGDIAKHTAKLGRAFGMRIVAVRRNKSASEDDGPDEIFGVEEKLELFKQSDFVVCSLPG 208
                  599****************************99999*****************************99995 PP

>> PF00148.14  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-07    0.0005     179     309 ..      31     180 ..      24     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.2e-07
   PF00148.14 179 tggttleelralgrakanlvlcsesanyaaklleekfgvpylklgspiGleatdeflrelaellg.......................keraperiaeerarlldaladyhkylagkrvavygggdlavalarllkelGmevvaagtetahrdd 309
                   g t  e l+++ +a +++  + + ++ a +lle+k  +++l+ +   G++  +  l+++++++                        +++ p+ +a + ++ +d+ +    +l++k+  ++g+gd a + a+l +  Gm++va+   ++  +d
  MMETSP0890-20130614|36926_1  31 HGSTAAEFLEKSIKALVVVPPGISGST-ARELLEKKPEIEWLH-SFSAGVDHLSPNLQNVQRAVAytngrgayssslaeyallgalyfNKKVPRLVANAAENKWDKFTM--PVLKNKTLGLVGYGDIAKHTAKLGRAFGMRIVAVRRNKSASED 180
                  466667778888888888888888777.***************.*******************99999*****************999666699999999999998866..********************************99655444444 PP

>> PF00389.25  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.1e-07   0.00093      21     102 ..      27     165 ..       6     321 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.1e-07
                  EEEECGSSHHHHHC....-SEEEE-TTS...-BSHHHHCC-TT--EEEES----TTB-HHHHH.H---EEE--TTTTHHHHHHHH.......................................................T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.......................................................x RF
   PF00389.25  21 vevkdellteellekakdadalivrsnt...kvtaevleklpkLkviatagvGvDniDldaak.erGIlVtnvpgystesvAEla.......................................................f 102
                  +++ + ++ +e le  k ++al+v          +e+lek p++++   +++GvD++  +  + +r ++ tn  g+++ s AE+a                                                       +
  MMETSP0890-20130614|36926_1  27 INFVHGSTAAEFLE--KSIKALVVVPPGisgSTARELLEKKPEIEWLHSFSAGVDHLSPNLQNvQRAVAYTNGRGAYSSSLAEYAllgalyfnkkvprlvanaaenkwdkftmpvlknktlglvgygdiakhtaklgrafG 165
                  55666666666666..4455555554444456889**********************6655543566******************99996666666666666666666665555555555555555555555555555550 PP

>> PF00670.16  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05      0.05      21     112 ..     140     236 ..     132     255 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.2e-05
                  ----EEEEE---------HHHHHH---EEEE--S-.HHHHHHHHC---EE--HHHCTTT-SEEEE-...----.SSB-HHHHCCS-TTEEEEE---T CS
   PF00670.16  21 iaGkvavvaGyGdvGkGcaaslkalGarvivtevd.PicalqaameGfevvtleevvkkadivvtt...tGnk.diitlehlekmkddaivcniGhf 112
                  +  k+  ++GyGd+ k +a+  +a+G r++    +   +      e f v +  e+ k++d+vv +   tGn+ +   + ++++mk +a+   iG  
  MMETSP0890-20130614|36926_1 140 LKNKTLGLVGYGDIAKHTAKLGRAFGMRIVAVRRNkSASEDDGPDEIFGVEEKLELFKQSDFVVCSlpgTGNTiNFCGQPEFSAMKSSAVFISIGRG 236
                  66788889*******************97765554055555677788999999999*****99975444776536677889*********9999964 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.047       2     112 ..     143     253 ..     142     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.1e-05
                  BEBEEB-------HHHHHHHH---EEEE--SSHHHHHHHHHTTEEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHHHH--- CS
   PF03446.10   2 kkigfiGlGvMGspmalnllkagyevavynrtkekveelvaegakaaesieelvasldvvilmvkagkavdeviegellealekgdilidgstsspedtrelakelkekgl 112
                  k++g++G G + ++ a+   + g++++++ r+k++ e+   +++ ++e+  el+++ d+v++ ++ + ++ +++ +  ++a+++++++i  +  ++ d  +l ++l+++ +
  MMETSP0890-20130614|36926_1 143 KTLGLVGYGDIAKHTAKLGRAFGMRIVAVRRNKSASEDDGPDEIFGVEEKLELFKQSDFVVCSLPGTGNTINFCGQPEFSAMKSSAVFISIGRGAAVDEDALCDALESNTI 253
                  789***********************************************************************99999**************999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.79
# Mc/sec: 1004.04
//
Query:       MMETSP0890-20130614|36929_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   15.5   0.2     0.0047   15.5   0.1    2.0  2  PF00225.18 Kinesin motor domain
  ------ inclusion threshold ------
      0.024   14.7   8.8        3.7    7.7   0.1    4.0  3  PF06005.7  Protein of unknown function (DUF904)
       0.31   10.6   4.6        3.4    7.3   0.0    4.0  4  PF02183.13 Homeobox associated leucine zipper
       0.49    9.9  11.2        0.4   10.2   3.8    2.5  2  PF03962.10 Mnd1 family
       0.64   10.6   5.2        7.6    7.2   0.2    2.7  2  PF07303.8  Occludin homology domain
        9.9    4.8   9.2        1.5    7.5   1.9    2.2  2  PF14362.1  Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.1e-06    0.0047     305     333 ..       2      30 ..       1      32 [. 0.94
   2 ?   -2.5   0.1      0.63   1.4e+03     260     279 ..     267     286 ..     251     315 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.1e-06
                  EEEEEEEE--BGGGHHHHHHHHHHHHHHC CS
   PF00225.18 305 ktlmivtvspsssnleetlstLrfaerak 333
                  kt+mi+tvs ++++++e +st rfa+r+ 
  MMETSP0890-20130614|36929_1   2 KTVMIATVSAEREQTDEAISTCRFAQRVA 30 
                  8*************************985 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.63
                  HHHHHHHHHHHHHHHHHHHT CS
   PF00225.18 260 anINkSLlaLgrvIsaLaen 279
                  ++  +S+  L++ I++L+++
  MMETSP0890-20130614|36929_1 267 NQSRQSIAYLKTSIEQLRRE 286
                  33457888888888888877 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.043        98      19      41 ..      47      69 ..      44     101 .. 0.69
   2 ?    5.7   1.2    0.0071        16       5      34 ..     258     287 ..     242     311 .. 0.83
   3 ?    7.7   0.1    0.0016       3.7       8      62 ..     314     359 ..     310     361 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF06005.7 19 tialLqmeieeLkeeneqlkeen 41
                 tia L+ e++ L+ +   l+++n
  MMETSP0890-20130614|36929_1 47 TIARLKAEVSSLRAQIGFLQSKN 69
                 78999999999988766666333 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0071
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF06005.7   5 lleeLeskiqqAvdtialLqmeieeLkeen 34 
                  + + L ++++q  + ia L+  ie+L++e 
  MMETSP0890-20130614|36929_1 258 QAKTLGERVNQSRQSIAYLKTSIEQLRRER 287
                  556788999999999999999999999983 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0016
                  HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHH CS
    PF06005.7   8 eLesk.iqqAvdtialLqmeieeLkeeneqlkeeneeLeeenkklkeereawqerl 62 
                  eLe++ +++  d+ ++L+ eie  ++           Le    +l+++ +aw++++
  MMETSP0890-20130614|36929_1 314 ELEKQvYKSSFDQLRKLKTEIETIQK----------MLEVGRARLQSDFDAWYDHV 359
                  67777246789999999999999998..........599999***********997 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0015       3.4      23      41 ..      50      68 ..      47      72 .. 0.87
   2 ?    0.8   0.1      0.16   3.7e+02      19      28 ..     246     255 ..     240     264 .. 0.67
   3 ?   -2.7   0.0         2   4.7e+03       9      20 ..     275     286 ..     274     287 .. 0.68
   4 ?    1.2   0.0      0.12   2.8e+02      11      43 ..     321     349 ..     318     353 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0015
   PF02183.13 23 sLqkEkekLraevlsLkek 41
                 +L++E+++Lra++  L++k
  MMETSP0890-20130614|36929_1 50 RLKAEVSSLRAQIGFLQSK 68
                 8***********9888877 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.16
   PF02183.13  19 aendsLqkEk 28 
                  ++n++L+kEk
  MMETSP0890-20130614|36929_1 246 EDNKALLKEK 255
                  4566666665 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 2
   PF02183.13   9 lLKrnydaLkae 20 
                  +LK + ++L++e
  MMETSP0890-20130614|36929_1 275 YLKTSIEQLRRE 286
                  677777777765 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.12
   PF02183.13  11 KrnydaLkaendsLqkEkekLraevlsLkeklq 43 
                  K+++d+L+    +L+ E e  +++++  +++lq
  MMETSP0890-20130614|36929_1 321 KSSFDQLR----KLKTEIETIQKMLEVGRARLQ 349
                  67777776....777777777777776666665 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.042        97      77     114 ..      47      89 ..       8     101 .. 0.76
   2 ?   10.2   3.8   0.00017       0.4      64     150 ..     252     340 ..     243     360 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.042
   PF03962.10  77 eleelkqrikelqaeiekekkkreet.....eereelleelke 114
                  ++++lk+++++l+a+i+  ++k+ e+     +er+el++ +++
  MMETSP0890-20130614|36929_1  47 TIARLKAEVSSLRAQIGFLQSKNGEDealtnTERTELQSACDQ 89 
                  4667777777888888777766666655666667777766655 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00017
   PF03962.10  64 kkklkteleklkkeleelkqrikelqaeiekekkkreeteeree.lleelkeleeelkklkkele.klakldpekveklkeetevakes 150
                   k++++++++l +++++++q+i+ l+++ie+ +++r  +  +e+ l + + + ee  kk   ele ++ k+  ++++klk+e+e++++ 
  MMETSP0890-20130614|36929_1 252 LKEKYSQAKTLGERVNQSRQSIAYLKTSIEQLRRERAIEGLHETqLPDAVPSEEEAKKKTTIELEkQVYKSSFDQLRKLKTEIETIQKM 340
                  5789999********************************66655244555555555666666777666677777777777777766554 PP

>> PF07303.8  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.8     0.023        53       6      52 ..     241     287 ..     237     316 .. 0.81
   2 ?    7.2   0.2    0.0034       7.6      14      46 ..     317     349 ..     301     359 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.023
    PF07303.8   6 seeqrqrYkaeFdsdykeYkeLqaeldeiskklaeldaelkslkegs 52 
                  s++  ++ ka  +++y++ k+L +++++ ++++a l++++++l++++
  MMETSP0890-20130614|36929_1 241 SNQALEDNKALLKEKYSQAKTLGERVNQSRQSIAYLKTSIEQLRRER 287
                  556667778889999*************************9999854 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0034
    PF07303.8  14 kaeFdsdykeYkeLqaeldeiskklaeldaelk 46 
                  k++++s +++ ++L++e+++i+k l+   a+l+
  MMETSP0890-20130614|36929_1 317 KQVYKSSFDQLRKLKTEIETIQKMLEVGRARLQ 349
                  7888888999*************9987777776 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3     0.074   1.7e+02     186     226 ..      50      88 ..       9     101 .. 0.70
   2 ?    7.5   1.9   0.00065       1.5     114     216 ..     251     361 ..     244     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.074
    PF14362.1 186 ekkealdaaqaeletlkaqldaaqaeleankrkaaleeera 226
                  + k+++++++a++  l++++++++a  +  +++++l+++ +
  MMETSP0890-20130614|36929_1  50 RLKAEVSSLRAQIGFLQSKNGEDEALTN--TERTELQSACD 88 
                  4455566666666666666666666666..66666655554 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00065
    PF14362.1 114 lkekqqeeqaaaqaqvaaslsaklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaelean.........k 216
                  l +++ ++++++ ++v++  ++++a l++ i++l++e++      ++++++v +e+e +++t  + + +vyk+  ++l ++++e+et+++ l+   a+l+++         k
  MMETSP0890-20130614|36929_1 251 LLKEKYSQAKTLGERVNQ-SRQSIAYLKTSIEQLRRERAIEGLHETQLPDAVPSEEEAKKKTTIELEKQVYKSSFDQLRKLKTEIETIQKMLEVGRARLQSDfdawydhvlK 361
                  555566666777777776.9**********************************************************************9999999998666666554441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1203  (0.0879901); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.42s 00:00:01.27 Elapsed: 00:00:01.19
# Mc/sec: 855.84
//
Query:       MMETSP0890-20130614|36960_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-17   62.0   0.0    9.3e-17   60.3   0.0    2.0  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    4.1e-13   49.0   0.0    7.7e-13   48.2   0.0    1.5  1  PF00498.21 FHA domain
    5.8e-13   48.5   0.0    1.2e-12   47.5   0.0    1.5  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
     0.0013   18.4   0.0     0.0054   16.4   0.0    2.2  2  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.7e-20   9.3e-17       1      69 [.      32     100 ..      32     101 .. 0.97

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 2.7e-20
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEES.TTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlealngkklggrel 69 
                  +f+gnL+++ tee ++  +  fG + +++l++d  tg+ +gf+fV F+++++ae+A++     +l+gr++
  MMETSP0890-20130614|36960_1  32 VFIGNLSYESTEESVRSALTRFGIVLECRLPKDrTTGQARGFGFVSFQERSEAEAAVK-AGSFELDGRQI 100
                  8*********************************************************.88899999998 PP

>> PF00498.21  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.2e-16   7.7e-13       2      68 .]     208     287 ..     207     287 .. 0.95

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.2e-16
                  EE-E-.TTSSS---TTTS-TTCEEEEEEET............CEEEEEEECST--EEETTEECSTTSEEEE-TTEEEEEC CS
   PF00498.21   2 tiGRs.sdcdivlddpsiSrkHalikydeg............gkfyleDlgSknGtfvNgqrigkgepvrLksgdvielG 68 
                   +GR  + cd+   +ps+S +Ha+i+++                 y+ Dl+S+nGt +Ng  i+  ++++++++d +++G
  MMETSP0890-20130614|36960_1 208 LVGRIkEICDVLTMHPSCSGQHAVIQFRARklttsqndtktlVLPYVMDLNSTNGTRLNGSMIEGARYYEIRHKDLLNFG 287
                  58999555*****************9999999**********************************************98 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.4e-16   1.2e-12       1      68 [.      32     100 ..      32     101 .. 0.98

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.4e-16
    PF14259.1   1 lyvrglppsvteedlreffspygkvegvriprnkd.grgrgfAfvefeseedAqkalkklnlvlkgrti 68 
                  +++++l++++tee +r  + ++g v ++r+p++++ g+ rgf+fv f  + +A++a+k+    l+gr i
  MMETSP0890-20130614|36960_1  32 VFIGNLSYESTEESVRSALTRFGIVLECRLPKDRTtGQARGFGFVSFQERSEAEAAVKAGSFELDGRQI 100
                  89*********************************************************99******98 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-06    0.0054       5      55 ..      50     104 ..      46     105 .. 0.84
   2 ?   -3.2   0.0         2     7e+03      13      28 ..     217     234 ..     214     235 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.6e-06
    PF13893.1   5 fskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvk.lygktLkvey 55 
                  + +fG v ++++ ++      +g++fv f+ +++A+ a+++  g   l+g+++   y
  MMETSP0890-20130614|36960_1  50 LTRFGIVLECRLPKDRttgqaRGFGFVSFQERSEAEAAVKA--GSFeLDGRQISFRY 104
                  779***********99****99*****************94..44446777776666 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2
    PF13893.1  13 rikifrkk..ggqAfvef 28 
                  +++ ++ +  g +A ++f
  MMETSP0890-20130614|36960_1 217 DVLTMHPScsGQHAVIQF 234
                  566667777679999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 1092.88
//
Query:       MMETSP0890-20130614|36976_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   16.9   0.1      0.012   15.3   0.0    1.8  2  PF10815.3 ComZ


Domain annotation for each model (and alignments):
>> PF10815.3  ComZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.21   2.8e+03      36      48 ..      20      32 ..      18      35 .. 0.81
   2 !   15.3   0.0   8.5e-07     0.012      18      42 ..      77     101 ..      74     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.21
    PF10815.3 36 llsLltkVmnEAY 48
                 ll Ll++V    Y
  MMETSP0890-20130614|36976_1 20 LLALLLSVVLSSY 32
                 7899999987666 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 8.5e-07
    PF10815.3  18 kaeLekkGIelsmeelqPllsLltk 42 
                  k+e++kkGI+ s e+ +Pl+ L+ +
  MMETSP0890-20130614|36976_1  77 KNEMDKKGIDASKEKTDPLFGLMEN 101
                  89******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:01.08
# Mc/sec: 310.64
//
Query:       MMETSP0890-20130614|36984_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   11.3   0.2       0.13   10.8   0.1    1.2  1  PF09295.5 ChAPs (Chs5p-Arf1p-binding proteins)


Domain annotation for each model (and alignments):
>> PF09295.5  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   9.7e-06      0.13      63     170 ..     107     211 ..     104     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.7e-06
    PF09295.5  63 DvrvevkiPGsvesyvvdergekeeatdelWaEtflsgvlRsllladdn.adddevqklvetrklnPltsgelekkaelFlkafeklfekgvklgadsevqvptlvnNy 170
                  D +v v+iP  ve ++ d   +  +++++ W+    s +l +    dd  ++dd  ++ v+++   P  s ele+ ++ F+ ++e  f + v+++    ++    +n +
  MMETSP0890-20130614|36984_1 107 DWNVSVEIPAPVEHQIEDDWCDLGSTSEQEWSAPIESHILED----DDGlHNDDLENEDVDDAETVPSVSYELEELSDRFILTAESSFVSEVEMSNGNFLRLNKCTNIH 211
                  889****************************87666655544....44313345567789999*************************999988776666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.51s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 812.27
//
Query:       MMETSP0890-20130614|36988_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.5   0.0       0.02   15.1   0.0    1.5  1  PF12796.2 Ankyrin repeats (3 copies)
       0.13   10.7   0.0       0.14   10.6   0.0    1.1  1  PF09818.4 Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.9e-06      0.02      36      84 ..     117     165 ..      30     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.9e-06
    PF12796.2  36 agnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgad 84 
                  a++++++k+L+++ a+  + + + +t L++ + + + +++++L+++g  
  MMETSP0890-20130614|36988_1 117 AQSIDAFKFLVQYLASSMSANGHSKTTLMFHIPHTEPDVARWLVSSGFR 165
                  5678************999999***********************9965 PP

>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     2e-05      0.14      44     126 ..      34     118 ..       4     156 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2e-05
    PF09818.4  44 appSkvrvaveaaaaklpeelkkskerrvaledfllrklkkelekltvkr..kgsgksgklsidkkgqevlersavelkdeeiel 126
                   ++S   v+++a++++l+ +++  ++ +v ++d l+r+++   ++   +    ++ ++  +  d++gq +   + ++++++++  
  MMETSP0890-20130614|36988_1  34 YEISADLVQIDADITRLQLRCEPLSQDTVDACDALYRSIEGLSRRNEIEDslNNKDHKPFIILDAQGQAIAYTTGAHITGHTVAQ 118
                  567888899*******************************999665554400455666779999**************9988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.74
# Mc/sec: 605.57
//
Query:       MMETSP0890-20130614|37003_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 1045.68
//
Query:       MMETSP0890-20130614|37005_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-33  115.2   0.6    2.8e-33  114.9   0.4    1.1  1  PF03637.12 Mob1/phocein family


Domain annotation for each model (and alignments):
>> PF03637.12  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.4   2.1e-37   2.8e-33       3     174 ..      50     226 ..      48     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 114.9 bits;  conditional E-value: 2.1e-37
                  XX--------HHHHTS------HHHHHHHHHHHHHHHHHHH----GGGS-TT.T-SSEE-----EE-B-----...S-B---HHHHHHHHHHHHHHHHT-TTTS-S-------T.THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHT-S-GGGGGGG CS
   PF03637.12   3 vveatlksgdlkkivklPegedeneWlavhvvdffeeiNllygtlsefctee.tcpqMsageeyeylwadekk...kptelpApqYiellldwiekklndeklFPtkvgvkfpk.nfkqivkkilrrlfrvfaHiYlhHfdeiveleleahlntvfkhfvafvkefnlldkkelepl 174
                  +++++l+ +  ++++klP+g   + W+  h +d  +ei  +   +++ c ++ + +qM ag++ +y+w +++    k +++ A  Y +l ++++ + ++d ++FP   g ++p+ +f  +vkk+++ +fr +aHiY+ Hf++i e+  +  +n  f++fv+f+ ef+l+d+ elepl
  MMETSP0890-20130614|37005_1  50 HIQSQLRFAGAAAAIKLPRGASRELWIDIHFIDCINEIYSIWSLIQSQCENKcSDKQMRAGSRRNYTWVNHYDtspKSQTITANAYANLSFEYAVHCIEDSNIFPIDEGSPYPEpEFDLVVKKVCTDIFRLYAHIYHCHFAHILEIRSNQLINDHFRRFVLFILEFKLVDRTELEPL 226
                  5788888888899************************************98735579************976522267899*******************************9857999*******************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       521  (0.0381071); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.65
# Mc/sec: 1172.37
//
Query:       MMETSP0890-20130614|37015_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-14   54.0   0.0    9.2e-14   51.3   0.0    2.0  2  PF02214.17 K+ channel tetramerisation domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.021   14.7   0.0    1.2  1  PF00651.26 BTB/POZ domain
      0.021   14.9   0.3       0.09   12.9   0.0    2.1  3  PF12559.3  Serine endopeptidase inhibitors
      0.027   14.3   0.0      0.047   13.5   0.0    1.3  1  PF10146.4  Zinc finger-containing protein


Domain annotation for each model (and alignments):
>> PF02214.17  K+ channel tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.7e-17   9.2e-14       1      92 [.      35     126 ..      35     128 .. 0.82
   2 ?    0.4   0.0       0.2   6.7e+02       2      31 ..     149     178 ..     148     192 .. 0.71

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 2.7e-17
   PF02214.17   1 vklNVgGkrfetskstLsrf..pdtlLgklaeteelddydeeeneyffDRspkaFetiLnyyrtggklhrpeel.clksfleElefygleelaie 92 
                  +klNVgGk+  t+k tL+++  +  lL++ ++ +   +++++++++f DR+ ++F  +L+y+r+  +l+  e++ +l+++l +++fygl++l  +
  MMETSP0890-20130614|37015_1  35 IKLNVGGKSLLTTKMTLEKCpfFAKLLQHDESGS-APAKRDDHGAIFCDRNGDTFGLVLDYLRD-NTLPAYEDIdDLRRLLIDAQFYGLDDL-AQ 126
                  79****************7632344444444444.99999************************.78877776626899***********99.55 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.2
   PF02214.17   2 klNVgGkrfetskstLsrfpdtlLgklaet 31 
                   + VgG+  +t  ++ + ++d+l +++++t
  MMETSP0890-20130614|37015_1 149 FVTVGGTTKSTIAKVKEDIHDSLQRNQENT 178
                  578999999999888887777765555554 PP

>> PF00651.26  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.2e-06     0.021      16     109 ..      38     134 ..      35     136 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.2e-06
                  EETTTEEEEE-HHHHHHH-HHHHHHTTTT......TTTT-SEEEEEETTS-HHHHHHHHHHHCCSEEEC..ECCHHHHHHHHHHHHT-HHHHCHHHHHHHH CS
   PF00651.26  16 vvgdgkefkahkavLaarSpyFkalftgg......eieestvseieledvepevfealLefiYtgeleit.seenveelLaaadllqiprlkdaceeflke 109
                   vg gk++ + k+ L  + p+F +l++++       +++ +       d + ++f+ +L+++   +l+   + +++  lL  a+++ +++l +ac e l++
  MMETSP0890-20130614|37015_1  38 NVG-GKSLLTTKMTLEKC-PFFAKLLQHDesgsapAKRDDH--GAIFCDRNGDTFGLVLDYLRDNTLPAYeDIDDLRRLLIDAQFYGLDDLAQACDERLSQ 134
                  566.56666667776655.9*********887765323333..3447999*************999999888899999******************99987 PP

>> PF12559.3  Serine endopeptidase inhibitors
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05      0.09       9      29 ..      50      70 ..      43      85 .. 0.77
   2 ?   -3.6   0.0       3.9   1.3e+04       7      14 ..     138     145 ..     128     153 .. 0.59
   3 ?   -1.5   0.1      0.83   2.8e+03      36      39 ..     181     184 ..     154     203 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.6e-05
    PF12559.3  9 nskavPFFArFLeeqvkdeet 29
                 + ++ PFFA++L  ++ +  +
  MMETSP0890-20130614|37015_1 50 TLEKCPFFAKLLQHDESGSAP 70
                 56899*********9775333 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.9
    PF12559.3   7 dknskavP 14 
                  dk +k +P
  MMETSP0890-20130614|37015_1 138 DKLIKQKP 145
                  33333333 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.83
    PF12559.3  36 vtkp 39 
                  +++p
  MMETSP0890-20130614|37015_1 181 SNQP 184
                  2222 PP

>> PF10146.4  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.047      96     161 ..     105     207 ..      93     210 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
    PF10146.4  96 eidekrkey.....lglekLpeleeeegskiskdrfe................................karsplepeasvtalPssssgflpPpapselsal 161
                   id+ r+ +      gl++L + ++e +s+i+kd++                                 +++++   + + t +Pss s+   P+ap ++sa+
  MMETSP0890-20130614|37015_1 105 DIDDLRRLLidaqfYGLDDLAQACDERLSQIEKDKLIkqkppsifvtvggttkstiakvkedihdslqrNQENTRGSNQPKTPTPSSISNTSEPRAPLTSSAF 207
                  5555555444444489*******************9889***************************998455555555566999************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 949.67
//
Query:       MMETSP0890-20130614|37021_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-42  145.2   0.0    1.3e-42  145.0   0.0    1.0  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.0   9.8e-47   1.3e-42       2     187 ..      31     212 ..      30     215 .. 0.95

  Alignments for each domain:
  == domain 1    score: 145.0 bits;  conditional E-value: 9.8e-47
                  HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTT..CEEEEEEEE.TTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEE CS
   PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfg..vslliagvd.eeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknvev 187
                  ++Gtt+v++++ +g+v+++d+ra++gs + s++ +eK+  ++++i++++aG+aaD+ ++++++ ++a+l++l++grp+sv       a++++a  +r++ r +g  v+++i+g+d +e +  l+++d +G+ +   + +a+Gsgs  a+++l+++y+ dl+ e+a+ la++a+++a+ rd++sg+ ++v
  MMETSP0890-20130614|37021_1  31 AHGTTTVAFAFAGGIVCCVDSRASMGSFVGSSE-TEKVLPLSPYIVATMAGSAADCGYFIRYVSARAKLFELEEGRPLSVL-----SASRMLASALRRQPRGLGlsVGTMIMGFDsQESQATLCYVDSDGARVNG-RLFAVGSGSPWAYSVLDAEYRYDLSIEDALNLAQRAVHAATMRDAYSGGYINV 212
                  69***************************7777.5**********************************************.....9999999999999999975689*******666789**************.6***********************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      198  (0.0144822); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.67
# Mc/sec: 786.86
//
Query:       MMETSP0890-20130614|37018_1  [L=1003]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       440  (0.0321826); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.32u 0.41s 00:00:01.73 Elapsed: 00:00:01.07
# Mc/sec: 2246.30
//
Query:       MMETSP0890-20130614|37030_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-12   46.3   0.0    3.2e-12   45.9   0.0    1.1  1  PF00085.15 Thioredoxin
    0.00035   20.0   0.0    0.00042   19.7   0.0    1.2  1  PF13728.1  F plasmid transfer operon protein
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.015   14.7   0.0    1.3  1  PF01323.15 DSBA-like thioredoxin domain
      0.019   15.0   0.0      0.047   13.7   0.0    1.6  1  PF13098.1  Thioredoxin-like domain
      0.022   14.6   0.0       0.03   14.2   0.0    1.3  1  PF13462.1  Thioredoxin
      0.094   12.7   0.0       0.21   11.6   0.0    1.6  2  PF13905.1  Thioredoxin-like
       0.11   12.3   0.0       0.21   11.5   0.0    1.5  1  PF13899.1  Thioredoxin-like


Domain annotation for each model (and alignments):
>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   1.6e-15   3.2e-12       3      85 ..      17     102 ..      15     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.6e-15
                  EESSHHHHHHHHHHHHSCEEEEEE-TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTT..HHHHHHTT--..SSSEEEEESSSSEE CS
   PF00085.15   3 lvltkenfeeevaksdklvlvefyApwCGhCkalaPeyeklaeelkekvvlakvdvden..kdlaseygve..giPtlklfkngkkv 85 
                  +  ++++f + v+k+++  lvefy+  CG C +++P+++kl  + + +++ a+v++d++   ++a+++gv   giP ++lf++++ +
  MMETSP0890-20130614|37030_1  17 EIKNSKEFADIVEKNSRATLVEFYSGMCGYCNEFKPTWDKLIAQAT-RLQTARVNIDKEhgMKIAQRLGVLdlGIPAVLLFNQQQDN 102
                  5678899************************************999.78888888887633689******54489******998765 PP

>> PF13728.1  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00042     117     200 ..      29     106 ..      13     128 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.2e-07
    PF13728.1 117 klakeyGlfffyrsdcpycealapilqaf.aekygievlpVsvDGkglpelpnsrkdtgqaqklgv..kttPalvlvdpktkkvkpv 200
                  +  ++  l+ fy++ c yc++++p+ +++ a++ ++++  V++D           +  ++aq+lgv    +Pa++l+++++++v+ +
  MMETSP0890-20130614|37030_1  29 EKNSRATLVEFYSGMCGYCNEFKPTWDKLiAQATRLQTARVNIDKE---------HGMKIAQRLGVldLGIPAVLLFNQQQDNVSNI 106
                  556788999*****************98736667**********44.........778899*****65589**********887766 PP

>> PF01323.15  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.9e-06     0.015       1      42 [.      35      74 ..      35     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.9e-06
                 CEEEEEBTTBHHHHHHHHCHHHHCCCC-SEEEEEEE-ST--- CS
   PF01323.15  1 tvdeffDvlCPyCylgkerleklaarspdvkvvlrpfelaga 42
                 t++ef++ +C+yC  +k+  +kl+a+   ++++   ++++++
  MMETSP0890-20130614|37030_1 35 TLVEFYSGMCGYCNEFKPTWDKLIAQA--TRLQTARVNIDKE 74
                 689***********************9..8888888888887 PP

>> PF13098.1  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.4e-05     0.047       2      79 ..      29      84 ..      28     114 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.4e-05
    PF13098.1  2 kgngkrvivvftdpdCpyCkklhkelkklndvtkylkdkfeviyvnidkskerseavldkdgekevkleekelgrklg 79
                 ++n   ++v f +  C+yC  ++++ +k   +++ +  + + + vnidk+                     +++++lg
  MMETSP0890-20130614|37030_1 29 EKNSRATLVEFYSGMCGYCNEFKPTWDK--LIAQAT--RLQTARVNIDKEHG------------------MKIAQRLG 84
                 57889999****************9996..355555..68899999995432..................23444444 PP

>> PF13462.1  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.6e-05      0.03      11      56 ..      30      70 ..      22     126 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-05
    PF13462.1 11 pdApvtvieyadltCphCarfheevekllekyidtgkvkfiyrefp 56
                 +++  t++e+ +  C +C +f+ +  kl++++      ++   +++
  MMETSP0890-20130614|37030_1 30 KNSRATLVEFYSGMCGYCNEFKPTWDKLIAQA-----TRLQTARVN 70
                 78999************************997.....444444444 PP

>> PF13905.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.21       2      44 ..      33      71 ..      31      82 .. 0.81
   2 ?   -1.4   0.0       1.3   2.5e+03      65      92 ..      69      98 ..      59     103 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
    PF13905.1  2 kivllyfaaswcppckaftpelkelyeklkaskdkveivyVsl 44
                 + +l+ f++  c+ c++f p++++l  +      +++   V++
  MMETSP0890-20130614|37030_1 33 RATLVEFYSGMCGYCNEFKPTWDKLIAQAT----RLQTARVNI 71
                 789*********************999887....444444444 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.3
    PF13905.1 65 vpfndkrrnklkklykvka..iPtlvvldk 92
                 v ++++   k++++++v    iP +++ ++
  MMETSP0890-20130614|37030_1 69 VNIDKEHGMKIAQRLGVLDlgIPAVLLFNQ 98
                 555555566777777776666888888874 PP

>> PF13899.1  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.21      13      81 ..      28      97 ..      18      98 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
    PF13899.1 13 areegkpllvifgadwcpdCqaldrdvlsdeevkaalaekfvllrvdvterdanleldr......qgvPvvvfld 81
                  +++ ++ lv f++  c++C+ ++ + +++  +++a + +   +++d +++ +   +++       g+P+v++++
  MMETSP0890-20130614|37030_1 28 VEKNSRATLVEFYSGMCGYCNEFKPT-WDK-LIAQATRLQTARVNIDKEHGMK---IAQrlgvldLGIPAVLLFN 97
                 56888999****************99.565.5666466555555555555555...3332335545599999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       540  (0.0394968); expected 273.4 (0.02)
Passed bias filter:                      509  (0.0372294); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 482.19
//
Query:       MMETSP0890-20130614|37040_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   17.8   3.3     0.0019   17.8   2.3    2.1  3  PF13023.1  HD domain
  ------ inclusion threshold ------
      0.055   11.9   0.8      0.074   11.4   0.5    1.2  1  PF05577.7  Serine carboxypeptidase S28
       0.22   10.9   4.1       0.28   10.6   2.2    1.6  1  PF03112.9  Uncharacterized protein family (ORF7) DUF
        1.5    8.7  11.7       0.49   10.2   5.0    2.7  3  PF08663.5  HalX domain
        1.7    6.2   9.5        2.2    5.8   6.6    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> PF13023.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   4.1e+03      45      55 ..      87      97 ..      75     135 .. 0.61
   2 ?   -1.3   0.1      0.52   1.4e+03      96      96 ..     174     174 ..     138     217 .. 0.50
   3 !   17.8   2.3   6.8e-07    0.0019      76     157 ..     216     297 ..     206     302 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.5
    PF13023.1 45 vdiervikmlL 55
                 v+++++ km+L
  MMETSP0890-20130614|37040_1 87 VNTKMMQKMFL 97
                 44444444443 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.52
    PF13023.1  96 d 96 
                   
  MMETSP0890-20130614|37040_1 174 M 174
                  1 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 6.8e-07
    PF13023.1  76 eekeeeeqeaaerifkllpedlaeelralweEFeaaetpeakfakalDklepilqnlekegdslaafeaklsqvygrkskkl 157
                   ++ + e e++e+i +  +++l+ +++++  E+e+a+   ak+ ++ D   + lqn +++ ++ +af+a+ls++ + +++ l
  MMETSP0890-20130614|37040_1 216 ISQLRTELEMNEKINAEHRDALKIKMENICREYEDAVEYAAKLRRNFDTKCLELQNQCTNATKQRAFQANLSIRSQLEQEAL 297
                  45668899****************************************************************9988776665 PP

>> PF05577.7  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   2.7e-05     0.074     188     261 ..     211     284 ..     186     330 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.7e-05
    PF05577.7 188 ktkegrqalseelqlcskldektdkdikkffsniaaefqgvvqysydgkanaalsalsikelCkllsnasktdl 261
                  + ++   +l++el++++k++ ++  ++k   +ni  e++ +v+y    + n+ ++ l+ ++ C+ ++++ + + 
  MMETSP0890-20130614|37040_1 211 ELEAEISQLRTELEMNEKINAEHRDALKIKMENICREYEDAVEYAAKLRRNFDTKCLELQNQCTNATKQRAFQA 284
                  444556789************9888899999*********************************9998765544 PP

>> PF03112.9  Uncharacterized protein family (ORF7) DUF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.2    0.0001      0.28      76     126 ..     213     259 ..     195     270 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
    PF03112.9  76 lveieslkvElnkienenkkkekpikdlLkikideileeyeLienvnYkfk 126
                    ei++l++El+  e+ n+    + +d Lkik+++i++eye   +   k++
  MMETSP0890-20130614|37040_1 213 EAEISQLRTELEMNEKINA----EHRDALKIKMENICREYEDAVEYAAKLR 259
                  2689999999998766665....568**************96665555555 PP

>> PF08663.5  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.0   0.00018      0.49      10      59 ..     171     223 ..     168     240 .. 0.79
   2 ?   -3.6   0.1       3.9   1.1e+04       5      49 ..     247     259 ..     246     268 .. 0.52
   3 ?   -3.3   0.0       3.1   8.5e+03      17      30 ..     309     322 ..     308     326 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
    PF08663.5  10 lqelfalasKrAvLeaeksaaeLedsdeYqeLqerle...eLradldatldel 59 
                   qe++ +a+ rA+L  +ks++ L +++ Y+  qe+++   eL+a+++ +  el
  MMETSP0890-20130614|37040_1 171 EQEMMLIARQRAALQLQKSERDLRKNAHYDLRQEEMRaqnELEAEISQLRTEL 223
                  699999***********************999999862224555555555544 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.9
    PF08663.5   5 eYddrlqelfalasKrAvLeaeksaaeLedsdeYqeLqerleeLr 49 
                  eY+d                                  e +++Lr
  MMETSP0890-20130614|37040_1 247 EYEDA--------------------------------VEYAAKLR 259
                  34443................................33344444 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 3.1
    PF08663.5  17 asKrAvLeaeksaa 30 
                  asK +vL++  +++
  MMETSP0890-20130614|37040_1 309 ASKISVLRTPTTNS 322
                  79999**9977665 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.6   0.00082       2.2      32     171 ..     104     248 ..      86     296 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00082
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXX.....XXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01496.14  32 rldeverklrkleseikkakielkdekekpdvpesk....evedleeel.eeleeelkeveeslesLekelneleelrnvlreekefleenk.......veelrelssldeefkalraaeglklgfvaGvikreklealerllwralrgnly 171
                  r++  + kl+++  ei++ + ++k+ +++    +++    ++ +l+ +   +le++ k +ee   sLe+e++ +  +r+ l+ +k++ +  k       +ee+r+ ++l+ e ++lr  + l+   + + i++e  +al+  +  ++r+  y
  MMETSP0890-20130614|37040_1 104 RIESPAAKLSSIAHEISESAVSTKEANHELRRGKEQtfddDIPTLNTSSpRSLEAREKALEERRHSLEQEMMLIARQRAALQLQKSERDLRKnahydlrQEEMRAQNELEAEISQLR--TELE---MNEKINAEHRDALKIKMENICRE--Y 248
                  666777888889999999998888555444444444344455555544326799999999999999999999999888876655544444334499998899999999999999998..4444...4689*********9999999999..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1169  (0.0855032); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.52
# Mc/sec: 1612.93
//
Query:       MMETSP0890-20130614|37060_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       445  (0.0325483); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 1076.72
//
Query:       MMETSP0890-20130614|37068_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-10   40.5   0.0    4.4e-10   39.1   0.0    1.7  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.044   13.3   0.0      0.085   12.4   0.0    1.5  1  PF01637.13 Archaeal ATPase
      0.065   12.6   0.0       0.11   11.9   0.0    1.3  1  PF13002.2  Arrestin_N terminal like
      0.096   12.4   0.0       0.26   11.0   0.0    1.7  1  PF13173.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.3e-13   4.4e-10       6      77 ..     214     310 ..     211     311 .. 0.96

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.3e-13
                  ----EEEE-TTS-HHHHHHHHHHHHTTTS...SEEEESTTC-S---STTESEEEESSS......................BSSHHHHHHH------T CS
   PF00271.26   6 kgikvailhgelpqnereeileqfnagks...kvlvatnvaerGidlpdvnvVinfdl......................prsvtsyiQriGRtgRa 77 
                  +++++ +++g+lp++ r +  + fn++     +vlva++++++G++l+  + V+n                         p ++t   Q++GR+gR 
  MMETSP0890-20130614|37068_1 214 PNLRCGVVYGQLPPETRSRQARLFNDEGQdayDVLVASDAIGMGLNLNIKRIVFNSTQkfgavarnlldenqggdtkrlaPVDPTLIKQIAGRAGRK 310
                  6899*********************9888888***************99999999999**************************************6 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.5e-05     0.085      15      68 ..      23      72 ..      14     137 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.5e-05
                 HHH..-SEEEEE--TT---HHHHHHHHHH-..---HHHHH------HHHHHHHH CS
   PF01637.13 15 lerepnsiiviyGprrsGKTaLlkeileelkekgkrvvyyinlreefeskleef 68
                 ++ ++++ii+  Gp +sGKT +  e+l++        vy  +lr  + + +e++
  MMETSP0890-20130614|37068_1 23 ARLSRRKIIYHAGPTNSGKTYWALEALKRS----SNGVYAGPLRLLAVEVFERL 72
                 555667888889*****************9....45888888887777777766 PP

>> PF13002.2  Arrestin_N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.11     109     135 ..     329     357 ..     295     360 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.1e-05
    PF13002.2 109 ikvkravlrgPdknslr..vfPPtelvat 135
                  ++  r++l++Pd+n+ r  +fPP e+ at
  MMETSP0890-20130614|37068_1 329 LNYVRSALNTPDRNHTRigIFPPSEMLAT 357
                  6678************9555*****9997 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.5e-05      0.26       2      74 ..      28     127 ..      27     149 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.5e-05
    PF13173.1   2 rkilvitGpRrvGKttllkqlakell..................keesilyinlddeelrkladpe.llelfleklkekkky..lflDEiqev......p 74 
                  rki+   Gp ++GKt+++ + +k+                     +++ +y +l + ++r++  ++  ++  +e+  ++k++   ++DEiq +       
  MMETSP0890-20130614|37068_1  28 RKIIYHAGPTNSGKTYWALEALKRSSngvyagplrllavevferLNNDGIYCSLFTGQERREVPFSsHASCTIEMVPTGKSFdvAVIDEIQLIgssdrgH 127
                  6778888***************999999999999999999998877888888888888877665654456666664445555559******985555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       266  (0.0194558); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:01.05
# Mc/sec: 826.17
//
Query:       MMETSP0890-20130614|37074_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.94
# Mc/sec: 563.40
//
Query:       MMETSP0890-20130614|37087_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-12   46.9  10.6    1.7e-06   27.3   0.8    2.8  3  PF12799.2  Leucine Rich repeats (2 copies)
    2.2e-09   36.8  13.1    1.9e-07   30.6   3.4    2.7  3  PF13855.1  Leucine rich repeat
    0.00089   19.2   1.6     0.0021   18.0   0.7    2.0  2  PF01468.12 GA module
  ------ inclusion threshold ------
       0.03   14.1   7.1         15    5.9   0.1    4.7  5  PF00560.28 Leucine Rich Repeat
       0.58   10.4   7.7        4.7    7.7   0.0    4.5  5  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.6   9.8e-09   2.7e-05       7      41 ..      15      48 ..      14      52 .. 0.94
   2 !   27.3   0.8   6.3e-10   1.7e-06       1      36 [.      55      92 ..      55      96 .. 0.89
   3 ?   -2.8   0.0       1.7   4.6e+03       3      10 ..     110     117 ..     108     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 9.8e-09
    PF12799.2  7 dLsnNnIkdlppelanLpnLktLnLsnNpisdlsa 41
                 dLs+N I +l++ +a+ + L +L L+nN+i++++a
  MMETSP0890-20130614|37087_1 15 DLSDNEIRKLGN-FARSQRLSMLLLNNNKITSIDA 48
                 8***********.********************86 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 6.3e-10
    PF12799.2  1 tnLevLdLsnNnIkdlpp..elanLpnLktLnLsnNpi 36
                 +nL++L L++N+I++l    +la++++L+ L+L  Np+
  MMETSP0890-20130614|37087_1 55 PNLTTLILIGNRIQSLTQieTLASCTKLEILSLLDNPV 92
                 7************99986324************99986 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.7
    PF12799.2   3 LevLdLsn 10 
                  L+vLd+++
  MMETSP0890-20130614|37087_1 110 LKVLDFRK 117
                  88888875 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   3.4   6.8e-11   1.9e-07       6      61 .]      14      67 ..      12      67 .. 0.96
   2 !   18.5   0.8   4.1e-07    0.0011       1      35 [.      55      90 ..      55      95 .. 0.93
   3 ?   -3.1   0.0       2.3   6.4e+03      25      33 ..     108     116 ..     104     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 6.8e-11
    PF13855.1  6 LdLsnNrlkvipdgaFkglsnLkvLdLsgnnlksispeafkgLpsLreLnLsgNrl 61
                 +dLs+N++++++   F + ++L  L L++n+++si++ + ++Lp+L+ L L gNr+
  MMETSP0890-20130614|37087_1 14 IDLSDNEIRKLG--NFARSQRLSMLLLNNNKITSIDATLGNDLPNLTTLILIGNRI 67
                 89*********9..6***************************************98 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 4.1e-07
    PF13855.1  1 pnLkeLdLsnNrlkvipd.gaFkglsnLkvLdLsgn 35
                 pnL++L+L +Nr++++ + +++ ++++L+ L+L +n
  MMETSP0890-20130614|37087_1 55 PNLTTLILIGNRIQSLTQiETLASCTKLEILSLLDN 90
                 89**************888**************877 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.3
    PF13855.1  25 snLkvLdLs 33 
                  + LkvLd+ 
  MMETSP0890-20130614|37087_1 108 DTLKVLDFR 116
                  557777776 PP

>> PF01468.12  GA module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.7     1e+04      23      36 ..      19      32 ..      18      36 .. 0.79
   2 !   18.0   0.7   7.8e-07    0.0021      28      56 ..     185     213 ..     183     216 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.7
                 HHHCT--....--- CS
   PF01468.12 23 qeinqlthLNnaQk 36
                 +ei +l++   +Q+
  MMETSP0890-20130614|37087_1 19 NEIRKLGNFARSQR 32
                 79999998777776 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 7.8e-07
                  --....---HHHHHHHHHSSSHHHHHHHH CS
   PF01468.12  28 lthLNnaQkdalknqInnAttvegVndlk 56 
                  l++L+++Qkda+k  I +A+t +++ +l 
  MMETSP0890-20130614|37087_1 185 LQNLSQSQKDAIKAAIAAAKTSQEIDELE 213
                  899********************998875 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.039   1.1e+02       5      19 ..      14      27 ..      13      29 .. 0.85
   2 ?    4.7   0.2     0.014        38       2      19 ..      33      50 ..      32      53 .. 0.81
   3 ?    5.9   0.1    0.0054        15       1      17 [.      56      72 ..      56      79 .. 0.84
   4 ?   -0.7   0.0      0.82   2.2e+03       1      12 [.      81      92 ..      81      98 .. 0.81
   5 ?   -2.3   0.0       2.7   7.5e+03       2       8 ..     110     116 ..     109     122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.039
                 EEETSSBCBCHHHHH CS
   PF00560.28  5 LdLsgNnltslppsl 19
                 +dLs+N + +l + +
  MMETSP0890-20130614|37087_1 14 IDLSDNEIRKLGN-F 27
                 7*******99987.5 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.014
                 ESEEEETSSBCBCHHHHH CS
   PF00560.28  2 LeeLdLsgNnltslppsl 19
                 L  L L++N++ts+   l
  MMETSP0890-20130614|37087_1 33 LSMLLLNNNKITSIDATL 50
                 66799********98765 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0054
                 TESEEEETSSBCBCHHH CS
   PF00560.28  1 nLeeLdLsgNnltslpp 17
                 nL++L L gN+++sl  
  MMETSP0890-20130614|37087_1 56 NLTTLILIGNRIQSLTQ 72
                 8************9765 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.82
                 TESEEEETSSBC CS
   PF00560.28  1 nLeeLdLsgNnl 12
                 +Le+L+L +N++
  MMETSP0890-20130614|37087_1 81 KLEILSLLDNPV 92
                 699***988876 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 2.7
                  ESEEEET CS
   PF00560.28   2 LeeLdLs 8  
                  L++Ld++
  MMETSP0890-20130614|37087_1 110 LKVLDFR 116
                  9999986 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.81   2.2e+03       7      16 ..      15      24 ..      13      25 .. 0.83
   2 ?    2.6   0.1     0.081   2.2e+02       3      16 ..      33      46 ..      31      47 .. 0.77
   3 ?    7.7   0.0    0.0017       4.7       1      16 [.      55      70 ..      55      74 .. 0.86
   4 ?    0.2   0.0      0.52   1.4e+03       1      12 [.      80      91 ..      80      95 .. 0.84
   5 ?   -3.0   0.0         5   1.4e+04       3       7 ..     110     114 ..     109     116 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.81
    PF13504.1  7 dLsgnrLtsL 16
                 dLs+n++  L
  MMETSP0890-20130614|37087_1 15 DLSDNEIRKL 24
                 89***99876 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.081
    PF13504.1  3 LkeLdLsgnrLtsL 16
                 L  L L++n++ts+
  MMETSP0890-20130614|37087_1 33 LSMLLLNNNKITSI 46
                 5557799*****97 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0017
    PF13504.1  1 pnLkeLdLsgnrLtsL 16
                 pnL++L L gnr++sL
  MMETSP0890-20130614|37087_1 55 PNLTTLILIGNRIQSL 70
                 7**********97766 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.52
    PF13504.1  1 pnLkeLdLsgnr 12
                 ++L+ L+L +n+
  MMETSP0890-20130614|37087_1 80 TKLEILSLLDNP 91
                 68999***9997 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 5
    PF13504.1   3 LkeLd 7  
                  Lk+Ld
  MMETSP0890-20130614|37087_1 110 LKVLD 114
                  99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:00.67
# Mc/sec: 987.16
//
Query:       MMETSP0890-20130614|37088_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   79.7  12.5    2.1e-22   79.2   8.7    1.3  1  PF13879.1  KIAA1430 homologue
  ------ inclusion threshold ------
       0.03   12.0   5.6      0.035   11.8   3.8    1.0  1  PF10168.4  Nuclear pore component
       0.14   11.8   1.8       0.52   10.0   1.2    1.9  1  PF00787.19 PX domain
       0.63   10.1   3.0         10    6.2   1.0    2.1  2  PF09701.5  CRISPR-associated protein (Cas_Cmr5)
        3.5    7.3  12.5        2.8    7.7   0.6    2.6  3  PF07716.10 Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PF13879.1  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   8.7   7.8e-26   2.1e-22       5      97 ..       2      94 ..       1      95 [. 0.96

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 7.8e-26
    PF13879.1  5 klkeikssidnkepkrhkhlkkklkklqqeeerlkeIereNqiLlskiieiqerkgsqslskvsqkkslnlskRkkeqqkIdeENqkllkRle 97
                 kl+eik sid +epkr+ h+kk+ kk+q++eer +eIer+N++Ll+k++ i+++++  + ++ +  +sln+++Rk+e+q+I++ENq +l+R++
  MMETSP0890-20130614|37088_1  2 KLNEIKCSIDMTEPKRMVHMKKNPKKAQMMEERYAEIERDNRLLLEKMSYIMRHSSLDNDNQFKYAHSLNRDQRKRELQRITRENQHILDRIQ 94
                 89****************************************************999977777889**************************9 PP

>> PF10168.4  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.8   1.3e-05     0.035     594     686 ..      27     126 ..      11     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
    PF10168.4 594 aaekLaekfeeikerqellvrrlkkllqsl....nsqLPvlseserdl.kkelqrinkqlrslaaaleqvkkkldkq..rkkiekqeslkkssleLsekq 686
                  +a+ + e++ ei+    ll++++  ++++     ++q+      +rd  k+elqri+ + +++   ++ ++ + d+   +++ +++++  k+  eL+   
  MMETSP0890-20130614|37088_1  27 KAQMMEERYAEIERDNRLLLEKMSYIMRHSsldnDNQFKYAHSLNRDQrKRELQRITRENQHILDRIQAAEPTYDHLawEEHEKQHQEYMKNICELPVVI 126
                  789999*********************965222246777777778887257*********************9997521445556778888888887655 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   0.00019      0.52      72     103 ..      91     128 ..       9     133 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
                  C......GTTSHHHHHHHHHHHHHHHHHHHHSCHHHHS CS
   PF00787.19  72 v......rkkdeefiekrrkgLeeyLqrllnhpelrks 103
                          + d   +e++ k+++ey++++++ p+++ s
  MMETSP0890-20130614|37088_1  91 DriqaaePTYDHLAWEEHEKQHQEYMKNICELPVVIHS 128
                  26666666667889*******************99876 PP

>> PF09701.5  CRISPR-associated protein (Cas_Cmr5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.0    0.0037        10      62     106 ..      32      85 ..      18      94 .. 0.79
   2 ?    4.3   0.0     0.014        39       9      40 ..      88     127 ..      84     131 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0037
                  -.........HHHHHHHHHHHHH------SS----HHHHHHHS-HHHHHHHHHH CS
    PF09701.5  62 k.........hslllehlakwleedtkedlnesdallealieqdlseyrlatke 106
                  +          +llle++++++++   ++ n+ +  +   ++q+++e++++t+e
  MMETSP0890-20130614|37088_1  32 EeryaeierdNRLLLEKMSYIMRHSSLDNDNQFKYAHSLNRDQRKRELQRITRE 85 
                  144444555567****************99999999999999999999999998 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHT........TTT---HHHHHHHHHHHHH CS
    PF09701.5   9 fAlekveevekkq........kklkkkYkslvkklpvlIl 40 
                  ++l +++++e  +        +k +++Y + + +lpv+I 
  MMETSP0890-20130614|37088_1  88 HILDRIQAAEPTYdhlaweehEKQHQEYMKNICELPVVIH 127
                  55566666555556666666699999***********996 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.8    0.0013       3.4      25      48 ..      26      49 ..      22      52 .. 0.89
   2 ?    7.7   0.6     0.001       2.8      28      52 ..      73      97 ..      70      98 .. 0.89
   3 ?   -2.6   0.1       1.6   4.5e+03      23      31 ..     109     117 ..     107     122 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
   PF07716.10 25 akeeeleervkeLeeeNaqLrqkv 48
                 +k + +eer  e e++N  L++k 
  MMETSP0890-20130614|37088_1 26 KKAQMMEERYAEIERDNRLLLEKM 49
                 6899****************9985 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.001
   PF07716.10 28 eeleervkeLeeeNaqLrqkveqLe 52
                 ++ ++++++ ++eN+ +++++++ e
  MMETSP0890-20130614|37088_1 73 DQRKRELQRITRENQHILDRIQAAE 97
                 78999****************9875 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.6
   PF07716.10  23 kkakeeele 31 
                   k+++e+++
  MMETSP0890-20130614|37088_1 109 EKQHQEYMK 117
                  467777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       907  (0.06634); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 592.78
//
Query:       MMETSP0890-20130614|37086_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.66
# Mc/sec: 1034.79
//
Query:       MMETSP0890-20130614|37093_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 599.09
//
Query:       MMETSP0890-20130614|37092_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-89  298.2  22.8      1e-88  298.0  15.8    1.0  1  PF02233.11 NAD(P) transhydrogenase beta subunit


Domain annotation for each model (and alignments):
>> PF02233.11  NAD(P) transhydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.0  15.8   7.4e-93     1e-88      18     321 ..       3     306 .]       1     306 [] 0.92

  Alignments for each domain:
  == domain 1    score: 298.0 bits;  conditional E-value: 7.4e-93
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX------HHHHHHHHHT-SEEEEE-----TT CS
   PF02233.11  18 LagLstqetarrGnilgivGmtialiatvlkkkeeela..lilaalvvggviGlliakkvemtelPqLvaifhslvGlaavlvalaeflkeeealleeasslavlskvevllgvfigavtftGsivafgkLqgiikskplllpkrhvlnlallvvsvlllvvfilseslt...lkllllllvtaislvlGlllvlaiGgaDmPvvislLnsysGwaaaaaGflLnnsllivaGalvgssGaiLsyimckamnrsllsvilGgfgeegskaaakekaeekevkeisaeevaellleassviivPGYGlav 321
                  +agLstq+tar Gn+lg +G+  +l+ ++++ +   ++  ++++ l++gg +G  ia++v+ telPq va+fhslvG+aa l+a+ ef +   +++++   +++ + + ++l++ ig++t tGs++afgkL+g i+s+pl l+ r+ +n++++++s+ +l  f++ +s+    l++++l+  +++s++lGl+++++iGg D+Pvvi++LnsysGwa++a+Gf+L+  ll+++Gal+gssGaiL++imc amnr +++vilGg+g+  ++++a  + e++e++ei  + +a++l+ea sv+ivPGYGlav
  MMETSP0890-20130614|37092_1   3 IAGLSTQSTARLGNTLGQAGVFLGLAVSLIRVDLPLIQllQVFIYLIIGGSVGFAIANRVSPTELPQTVAAFHSLVGIAASLTAIGEFAR-IVHYAQD---MTTSTAISLFLATWIGGITATGSMIAFGKLNGNISSAPLALKYRDPINITMAATSIGALLLFLIAKSMQfyaLGFIALFFAAILSATLGLHVTASIGGGDVPVVITVLNSYSGWALCAEGFMLDSALLTIVGALIGSSGAILTHIMCVAMNRDIVHVILGGYGSVAKSPSAM-SLEHGEHTEIDLDAAATMLKEAFSVVIVPGYGLAV 306
                  79***************************9998887765589999*******************************************55.4444444...578999*****************************************************99999888751115667888888*********************************************************************************997776666.569******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 1182.72
//
Query:       MMETSP0890-20130614|37095_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-35  119.4   1.2    1.2e-34  118.5   0.8    1.5  1  PF01412.13 Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.8   8.5e-39   1.2e-34       5      87 ..      10      91 ..       6     116 .. 0.88

  Alignments for each domain:
  == domain 1    score: 118.5 bits;  conditional E-value: 8.5e-39
                 HHHCCSGGGCB-TTT--BS--EEETTTTEEE-TTTHHHHHCST.TT--EEETTTS---HHHHHHHHH---HHHHHHHCCCTTT CS
   PF01412.13  5 kellkepenkvCaDCgaknptWaslnlgvflCieCsgvhrslgvhiskvkSltldkwteeqlellkelgNkkaneileaksek 87
                 +++++ p+n++CaDCg++np+W+s+++g ++C+eCsg+hr lgvhis+v+S+t+d+w+e+q++++k +gNk++ne +++ +  
  MMETSP0890-20130614|37095_1 10 EQVRAIPGNDRCADCGQRNPQWCSVTYGNMICLECSGFHRGLGVHISFVRSMTMDSWSEKQIQMMKCGGNKQLNEWWQKYN-V 91
                 788999************************************************************************993.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.63
# Mc/sec: 1673.65
//
Query:       MMETSP0890-20130614|37097_1  [L=1069]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       597  (0.0436659); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.49u 0.39s 00:00:01.88 Elapsed: 00:00:01.12
# Mc/sec: 2287.24
//
Query:       MMETSP0890-20130614|37111_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-06   27.4  10.5    3.7e-06   26.5   7.3    1.4  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    4.3e-06   26.1   8.7    8.2e-06   25.2   6.0    1.5  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
    4.5e-05   22.9  10.8    8.4e-05   22.1   7.5    1.4  1  PF13639.1  Ring finger domain
    5.2e-05   22.7   9.8    8.9e-05   21.9   6.8    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.018   14.4   1.0        1.2    8.5   0.0    3.4  4  PF02878.11 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
      0.061   12.7   9.5       0.16   11.4   6.6    1.7  1  PF02891.15 MIZ/SP-RING zinc finger
       0.58    9.6   7.8        1.6    8.1   5.4    1.8  1  PF14445.1  Prokaryotic RING finger family 2
        1.4    8.4   9.7        1.4    8.3   1.3    2.5  2  PF14447.1  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   7.3   2.2e-09   3.7e-06       5      45 ..     195     235 ..     192     236 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.2e-09
    PF13923.1   5 CpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiCr 45 
                  CpiC+ +   +vi+  C H  C +C+++w + s ++CP C 
  MMETSP0890-20130614|37111_1 195 CPICFATIDHAVIIRACAHNACADCLKRWRVLSPNECPSCG 235
                  *****************************9998889****6 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   6.0   4.8e-09   8.2e-06       1      41 []     195     234 ..     195     234 .. 0.97

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.8e-09
                  -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                  CpiC+ ++  ++ +  C H+ C +C+++++   + ++CP C
  MMETSP0890-20130614|37111_1 195 CPICFATIDHAVIIRACAHNACADCLKRWRV-LSPNECPSC 234
                  *******************************.88888**** PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   7.5   4.9e-08   8.4e-05       3      43 ..     195     234 ..     193     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.9e-08
    PF13639.1   3 CaiCldelsegeevvrlp.CgHvfHeeCldewlrss.nsCPlC 43 
                  C+iC+ ++   +++v ++ C H  +++Cl++w   s n+CP C
  MMETSP0890-20130614|37111_1 195 CPICFATI---DHAVIIRaCAHNACADCLKRWRVLSpNECPSC 234
                  ********...44555555*************866549***** PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   6.8   5.2e-08   8.9e-05       4      49 ..     194     240 ..     191     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5.2e-08
    PF13920.1   4 tCvvCler.eadvlllpCgHlclCeeCaerllk.rkkkCpiCrspies 49 
                   C++C+   +  v++  C H  +C++C +r++  + ++Cp C   i++
  MMETSP0890-20130614|37111_1 194 PCPICFATiDHAVIIRACAHN-ACADCLKRWRVlSPNECPSCGGIIDH 240
                  5******9456777778****.*********769********987765 PP

>> PF02878.11  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.38   6.5e+02      39      61 ..      27      49 ..       4      54 .. 0.72
   2 ?    8.5   0.0   0.00067       1.2      50      83 ..     125     158 ..     124     164 .. 0.93
   3 ?   -0.6   0.0      0.43   7.3e+02      53      88 ..     168     204 ..     161     217 .. 0.73
   4 ?    1.1   0.0      0.13   2.2e+02      37      56 ..     265     289 ..     236     293 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.38
                 SS-EEEE-----TTHHHHHHHHH CS
   PF02878.11 39 kkkkvvvGrDtRvsseelaeala 61
                  + +v++  Dt+ +s  +++ ++
  MMETSP0890-20130614|37111_1 27 LAIPVIIQSDTHLQSSPVITNIF 49
                 467899999**999999888776 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00067
                  -TTHHHHHHHHHHHHCCTT-CEEEE----HHHHH CS
   PF02878.11  50 RvsseelaealaaglaanGvevillgllptPals 83 
                  R +s+e+ae+++a  +a+Gv++ l+g+l+ P+++
  MMETSP0890-20130614|37111_1 125 RKNSNEIAEIALANCVATGVQAALTGPLTLPIFR 158
                  99***************************99875 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.43
                  HHHHHHHHHHHHCCTT-CEEEE-.---HHHHHHHHHH CS
   PF02878.11  53 seelaealaaglaanGvevillg.llptPalsfairk 88 
                  s    ++laa l  + ++   l+ l+p P++ ++i +
  MMETSP0890-20130614|37111_1 168 SSLTDRKLAAKLSGSSITSRRLSrLCPCPICFATIDH 204
                  55555667777777777888888899***99999988 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.13
                  G.....SSS-EEEE-----TTHHHH CS
   PF02878.11  37 e.....kkkkkvvvGrDtRvsseel 56 
                  +     ++++   vG D+R+ s+ l
  MMETSP0890-20130614|37111_1 265 QffyddDDDSDTSVGDDQRYDSDAL 289
                  4444446778889********9987 PP

>> PF02891.15  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.6   9.2e-05      0.16       5      47 ..     195     234 ..     192     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.2e-05
   PF02891.15   5 CplslsrisiPvrgekCkHiqCfdlksflesnertktWnCPvC 47 
                  Cp+++ +i ++v  + C+H+ C d+          +  +CP C
  MMETSP0890-20130614|37111_1 195 CPICFATIDHAVIIRACAHNACADCLK---RWRVLSPNECPSC 234
                  ************************944...3333334457777 PP

>> PF14445.1  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.4   0.00095       1.6      10      54 ..     195     241 ..     186     244 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00095
    PF14445.1  10 CdlCrtsaelaelrqCvlCgrwqCaaC...Wdd.eygvCkrCggvipdl 54 
                  C +C +  ++a   +   C +++Ca+C   W      +C +Cgg+i+ +
  MMETSP0890-20130614|37111_1 195 CPICFATIDHAV--IIRACAHNACADClkrWRVlSPNECPSCGGIIDHV 241
                  566655555443..344688999999955565435689********876 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6     0.013        21      36      52 ..     189     205 ..     188     208 .. 0.82
   2 ?    8.3   1.3   0.00084       1.4      23      51 ..     209     240 ..     206     244 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.013
    PF14447.1  36 lerYsgCPfCgtrletd 52 
                  l+r   CP+C + ++++
  MMETSP0890-20130614|37111_1 189 LSRLCPCPICFATIDHA 205
                  577888****9999987 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00084
    PF14447.1  23 lpCgHlvpdetFdlerY...sgCPfCgtrlet 51 
                   +C+H  ++++   +r    + CP Cg  +++
  MMETSP0890-20130614|37111_1 209 RACAHNACADCLKRWRVlspNECPSCGGIIDH 240
                  58*********77777555599*****98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       527  (0.0385459); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 999.04
//
Query:       MMETSP0890-20130614|37114_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       325  (0.0237712); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.71
# Mc/sec: 928.17
//
Query:       MMETSP0890-20130614|37129_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   13.4   4.2      0.043   13.3   0.5    2.6  2  PF00594.15 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
       0.17   12.3   4.5       0.28   11.6   3.1    1.3  1  PF12618.3  Protein of unknown function (DUF3776)
        5.2    7.4   7.1        3.2    8.0   3.2    1.9  2  PF13334.1  Domain of unknown function (DUF4094)
        8.6    5.9   6.5        4.9    6.7   2.6    1.8  2  PF06212.7  GRIM-19 protein


Domain annotation for each model (and alignments):
>> PF00594.15  Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   1.3e-05     0.043      10      24 ..      78      92 ..      69      98 .. 0.86
   2 ?   -0.3   0.1      0.23   7.9e+02       2      12 ..     108     118 ..     107     120 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-05
                 TTCCCSST-SSCCHH CS
   PF00594.15 10 erEcqeEvCeleeac 24
                  rEc++E+C+l  a+
  MMETSP0890-20130614|37129_1 78 ARECVREACDLGMAR 92
                 6*********97666 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
                  CCC----HTTC CS
   PF00594.15   2 eelekgnlerE 12 
                  e+l+++ lerE
  MMETSP0890-20130614|37129_1 108 EALALTELERE 118
                  67788888888 PP

>> PF12618.3  Protein of unknown function (DUF3776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.1   8.2e-05      0.28      10      74 ..       3      65 ..       1      85 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.2e-05
    PF12618.3 10 skstatedksekeeeessatdsekfkiseenqpknskeekEstiaenrkekqgnclqlkrsrlse 74
                 + +t+ e+ ++ ee+e    +     i++ ++ + ++   E+   e + ek  ++lq k++rl++
  MMETSP0890-20130614|37129_1  3 DIDTKEEITESTEEKEARMVVEALETIAADEALTKAILKEEN--KEESTEKTIDTLQVKLARLNA 65
                 678999999999***9997777777*****************..*******************94 PP

>> PF13334.1  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.2   0.00094       3.2      34      91 ..       9      62 ..       3      66 .. 0.81
   2 ?   -1.1   0.0      0.68   2.3e+03      40      40 ..     124     124 ..      95     148 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00094
    PF13334.1 34 lissqeaeeelqlvsedcdkkkkkesdqkdilgeVsktheaiqsLdktIssLemeLAa 91
                 +i+++++e+e+++v e +++ +     +++ ++ + k  ++  s +ktI++L+++LA 
  MMETSP0890-20130614|37129_1  9 EITESTEEKEARMVVEALETIA----ADEALTKAILKEENKEESTEKTIDTLQVKLAR 62
                 4566788889999989998888....77788888888888888*************96 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.68
    PF13334.1  40 a 40 
                  a
  MMETSP0890-20130614|37129_1 124 A 124
                  1 PP

>> PF06212.7  GRIM-19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.6    0.0014       4.9      53     105 ..       6      58 ..       3      74 .. 0.85
   2 ?   -1.3   0.0      0.42   1.5e+03      60      86 ..     116     142 ..      88     148 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0014
    PF06212.7  53 nkerrreeiEklearnailpllqAErDrrylkqlrrnreeEaelmkdvpgWkv 105
                  +ke+ +e++E+ ear+++ +l +   D+   k + ++ ++E++  k ++  +v
  MMETSP0890-20130614|37129_1   6 TKEEITESTEEKEARMVVEALETIAADEALTKAILKEENKEESTEKTIDTLQV 58 
                  69999***************************999999999998888887777 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.42
    PF06212.7  60 eiEklearnailpllqAErDrrylkql 86 
                  e E  + + a  ++++A+ D +  +ql
  MMETSP0890-20130614|37129_1 116 EREFSQSKAAKRSIILADADANERRQL 142
                  455556666666777777776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1206  (0.0882095); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.69
# Mc/sec: 538.31
//
Query:       MMETSP0890-20130614|37126_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   28.3   0.0    3.1e-06   27.1   0.0    1.5  1  PF01734.17 Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.2e-10   3.1e-06     159     201 ..      13      69 ..       5      72 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.2e-10
   PF01734.17 159 deddvpladavraSsafPglf..............ppvsldgelyvDGGildNnPil 201
                  +++ v la+av+aS+a+Pg++               p+++dg ++vDG+i   +P++
  MMETSP0890-20130614|37126_1  13 TTPHVTLASAVAASCALPGILrpmrleakdangivAPFEVDGVEWVDGSIQADTPFR 69 
                  578899***************6666666666666666666888**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       330  (0.0241369); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.63
# Mc/sec: 1236.22
//
Query:       MMETSP0890-20130614|37141_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   17.7   0.1     0.0021   17.5   0.1    1.0  1  PF03997.7 VPS28 protein


Domain annotation for each model (and alignments):
>> PF03997.7  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.6e-07    0.0021     125     172 ..      15      65 ..       9      75 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.6e-07
                  XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXX CS
    PF03997.7 125 lseLleslnrlselpedfearsklkkWlvrlnk...lsisDelsdeqvRel 172
                  l+++   l r+sel  d+ + sk+ +W +++++   + i Del+++q R+ 
  MMETSP0890-20130614|37141_1  15 LQNIDRILSRVSELAYDIVVVSKIRDWTNQIENresFVIDDELTETQCRHY 65 
                  677777899**********************86333679*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       531  (0.0388385); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.45s 00:00:00.74 Elapsed: 00:00:00.64
# Mc/sec: 292.06
//
Query:       MMETSP0890-20130614|37134_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.045   13.3   0.0    1.9  2  PF04360.7 Serglycin
       0.02   14.2   0.0       0.16   11.3   0.0    2.3  3  PF09239.6 Topoisomerase VI B subunit, transducer


Domain annotation for each model (and alignments):
>> PF04360.7  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.5e-06     0.045      97     117 ..     238     258 ..     182     292 .. 0.68
   2 ?   -2.3   0.0      0.44     3e+03     111     141 ..     330     360 ..     328     366 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.5e-06
    PF04360.7  97 gsGsGsGsgsGsGflaeleqe 117
                    GsGsGsgsGsG ++ + q+
  MMETSP0890-20130614|37134_1 238 RIGSGSGSGSGSGIVSCVRQD 258
                  446666666666666555554 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.44
    PF04360.7 111 laeleqeyqpvdendivyfnyrsldrnltsq 141
                  l+++++ey    ++  + +n+r  +r l ++
  MMETSP0890-20130614|37134_1 330 LQQFKREYPQHANKSGIIYNLRKDKRFLIEH 360
                  5677788866666666677999999988775 PP

>> PF09239.6  Topoisomerase VI B subunit, transducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.3e-05      0.16      52      86 ..      67     102 ..      49     105 .. 0.84
   2 ?   -1.1   0.0      0.16   1.1e+03     116     151 ..     155     190 ..     151     200 .. 0.67
   3 ?   -1.7   0.0      0.24   1.6e+03     115     138 ..     190     213 ..     181     221 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.3e-05
                  ----.-----EEEEEETTEEE-STGGGSHHHHHHHH CS
    PF09239.6  52 geie.keekveilRfANrvPLlydegacaitkavks 86 
                  g+++ ++e+++ l fANr P ++ e+ c+i + +++
  MMETSP0890-20130614|37134_1  67 GQASgSNEELKSLLFANRFPQMFVEKVCSIADNIED 102
                  44443788999999*****************99987 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.16
                  S-----SB---HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF09239.6 116 ksesKeaiadveeieeeirlalkevarkLkkylskk 151
                  kses + +a  + i ++i+++ +  a+ +   +  +
  MMETSP0890-20130614|37134_1 155 KSESADGVALRPSISHDISSGHQFEAQPVCIEIITR 190
                  677888888888888888877776666655444443 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.24
                  BS-----SB---HHHHHHHHHHHH CS
    PF09239.6 115 fksesKeaiadveeieeeirlalk 138
                   +s +Ke+i ++  i++++++ ++
  MMETSP0890-20130614|37134_1 190 RNSSAKEEIYETSSITDDLHEYMM 213
                  568999999999999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.92
# Mc/sec: 1054.92
//
Query:       MMETSP0890-20130614|37145_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-11   44.6   0.1      2e-11   43.9   0.1    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    0.00016   22.0   0.0    0.00028   21.2   0.0    1.3  1  PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1     3e-15     2e-11       8      97 ..     182     275 ..     152     277 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 3e-15
                  EEEES--E-EEEEEEEESSSCEEEEEEET--EEEEEE-EE........SCECECTSTT.EEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEE CS
   PF03171.15   8 nrYpppekglglgpHtDnenriltillqddggglqfrked........kwidvppdpv.allvnfgdvllvltngryksvlHrvlpntrgeRislaffl 97 
                   +Y  ++ + g++pHtD+  +++t+++  d  gl++ + d        +++  +  ++  +l+ +gd l+  tng  ++++Hrvl +  + R+s++ f+
  MMETSP0890-20130614|37145_1 182 TYYD-DDDQTGIAPHTDF--ELFTVMHW-DSPGLEILTRDtqswikphTTFESDSSDNpVFLIICGDCLERFTNGLVRATPHRVLQTP-HDRMSIIRFH 275
                  4555.99***********..*******9.*****************9988888888888***************************95.******9997 PP

>> PF14226.1  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.1e-08   0.00028      13      71 ..       8      67 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.1e-08
    PF14226.1 13 reevakelreAceevGffqvvnh.gvpeelieevfeaarefFalpleeKeklarspefrg 71
                  ++v+++lr+A+ + G f+v      + + i+ v++ a++  +lp e K+k+a  +++ g
  MMETSP0890-20130614|37145_1  8 SRDVISQLRSALINDGYFYVRDIpELSRDYIKMVYDFAQKAHELPVEIKKKYAAAGTYVG 67
                 5789****************887579**************************88876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.43s 00:00:01.04 Elapsed: 00:00:00.87
# Mc/sec: 911.72
//
Query:       MMETSP0890-20130614|37158_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-11   42.8   0.0    1.2e-10   41.5   0.0    1.7  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
  ------ inclusion threshold ------
      0.022   14.1   0.1      0.055   12.8   0.0    1.6  2  PF05707.7  Zonular occludens toxin (Zot)
      0.037   13.4   0.5      0.099   12.0   0.1    2.0  2  PF03358.10 NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   2.7e-14   1.2e-10      45     130 ..      12      94 ..       6      96 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 2.7e-14
                  HHHHHHHHHHHTS-SEEEEEETGGGC-HHH.SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHHTTSCCEEE- CS
   PF00004.24  45 kirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                   +++lf+ a+++ + + +fiDE++a+  sr + + +e+ ++++n++l +    ++    +++++atnr d+ld+a+l +R+d+ +++
  MMETSP0890-20130614|37158_1  12 ALHALFRWAQTSPTGVLVFIDEAEAFLASRsRAKLTEHMRNALNAFLYQTGSPTR---SFVLVLATNRADDLDDAVL-DRIDETLFF 94 
                  6789999998887559**************4445677777788888888888888...6******************.****99887 PP

>> PF05707.7  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.055      69     107 ..      14      52 ..       8      89 .. 0.83
   2 ?   -1.9   0.0      0.37   1.7e+03     138     141 ..     191     194 ..     150     232 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.2e-05
    PF05707.7  69 kyldkwrtld.kgallviDEcqqifpvragegkkvpevl.e 107
                  ++l++w+++   g l++iDE+  +  +r++   k  e++ +
  MMETSP0890-20130614|37158_1  14 HALFRWAQTSpTGVLVFIDEAEAFLASRSRA--KLTEHMrN 52 
                  78999*99777***************99995..44444433 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.37
    PF05707.7 138 elav 141
                   ++ 
  MMETSP0890-20130614|37158_1 191 HHKI 194
                  2222 PP

>> PF03358.10  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.36   1.6e+03     119     133 ..      41      55 ..       8      75 .. 0.70
   2 ?   12.0   0.1   2.2e-05     0.099      31      75 ..     180     237 ..     146     238 .. 0.57

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.36
                  ---HHHHHHHHCHHH CS
   PF03358.10 119 agglraeealrpvla 133
                  +  ++++e++r++l 
  MMETSP0890-20130614|37158_1  41 RSRAKLTEHMRNALN 55 
                  455667777877776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.2e-05
                  --EEEEE.E.....---..GG........-GGHHH.HC..--STCCHCHHHHHHHH-SEEE CS
   PF03358.10  31 gaeveli.d.....ladlilp........lcdedlese..gqtsddlqellekvaaadgvi 75 
                  +++ +++ +     + +   +          +ed++++  +q++++++++++++ aadg++
  MMETSP0890-20130614|37158_1 180 QLNAQILmQvvhhkIEE---HkkrgfilhQSTEDKQKQecQQDQQEINDIIQRMNAADGFL 237
                  33333332221122444...1334565443333333337799*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       861  (0.0629754); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.41s 00:00:01.00 Elapsed: 00:00:00.66
# Mc/sec: 1005.74
//
Query:       MMETSP0890-20130614|37166_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.096   11.2   9.9      0.073   11.6   5.9    1.5  1  PF08317.6  Spc7 kinetochore protein
       0.46   10.1   9.3        3.9    7.1   0.1    3.5  2  PF02183.13 Homeobox associated leucine zipper
        4.9    6.5  17.0        8.2    5.8  11.7    1.5  1  PF04156.9  IncA protein
        5.9    5.6  11.4        8.9    5.0   7.9    1.2  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        9.9    5.6  13.0        2.1    7.8   5.4    2.1  2  PF03962.10 Mnd1 family


Domain annotation for each model (and alignments):
>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.9   2.7e-05     0.073     189     267 ..     153     231 ..     123     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
    PF08317.6 189 lkeelasLrqlkdeleecdseeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekil 267
                  +  e + L++ ++++   ++++lekl++eL  l ++++e+++  +  ++e+++l +k+++l++  + l  e+a+++ i 
  MMETSP0890-20130614|37166_1 153 VLAERDALQRDHERVMTLNKQDLEKLQHELILLRSELSERTEREKRARTERRNLLDKVSNLNDTNAALSREVADLRAIS 231
                  34566788888889999********************************************************998876 PP

>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   3.9      0.14   3.8e+02      25      34 ..     172     181 ..     147     198 .. 0.47
   2 ?    7.1   0.1    0.0014       3.9      16      39 ..     212     235 ..     208     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.14
   PF02183.13  25 qkEkekLrae 34 
                  +++ ekL+ e
  MMETSP0890-20130614|37166_1 172 KQDLEKLQHE 181
                  2344444444 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0014
   PF02183.13  16 aLkaendsLqkEkekLraevlsLk 39 
                  +L++ n +L +E++ Lra   +L 
  MMETSP0890-20130614|37166_1 212 NLNDTNAALSREVADLRAISDELI 235
                  7999**************988875 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.7     0.003       8.2      82     186 ..     142     243 ..      85     247 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.003
    PF04156.9  82 elsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelqr 186
                  ++se++s   +   e ++l++  +   + ++   +dle+lq+el  l+++l + +e+ k+++ e r+l++++s l+++   l  e+++l++ +++l  +++++q+
  MMETSP0890-20130614|37166_1 142 KFSEAKSSYLKVLAERDALQRDHERVMTLNK---QDLEKLQHELILLRSELSERTEREKRARTERRNLLDKVSNLNDTNAALSREVADLRAISDELIAMVESKQE 243
                  5555666666666666666666666666665...89999999999999999999999999999999999999999999999999999999999999999999887 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.9    0.0032       8.9      22     132 ..     143     259 ..     121     282 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0032
    PF10186.4  22 Llelrlrlanlkaeketlkkkveealeeaene...kklaaqqlklevaskkerieqirkrieqlkeeieqkrerieelkealaqrrsdle...asaqlekrraeqlaklqeeikrtk 132
                  + e +  + +++ae+++l++  e+ ++ ++++    ++++ +l++e ++++er ++ r+  ++l +++++++   ++l++++a++r       a  + +++ ++  a  + +++ t+
  MMETSP0890-20130614|37166_1 143 FSEAKSSYLKVLAERDALQRDHERVMTLNKQDlekLQHELILLRSELSERTEREKRARTERRNLLDKVSNLNDTNAALSREVADLRAISDeliAMVESKQEQKSFPAPSSSSSSTTT 259
                  78889999******************9777779887778888888888888888888888888888888888888888888888887655443444444444444444444433333 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.16   4.3e+02     109     147 ..      64     103 ..      36     117 .. 0.69
   2 ?    7.8   5.4   0.00075       2.1      65     145 ..     161     243 ..     154     281 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.16
   PF03962.10 109 leelkeleeelkklkkele.klakldpekveklkeeteva 147
                  ++e + l  ++k+l ++l  ++++++++++++ +++ e a
  MMETSP0890-20130614|37166_1  64 VRERDRLDATCKALGAQLVaAVRESEKAMYNEARQAAEAA 103
                  4556666666777777766566666666666666655544 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00075
   PF03962.10  65 kklktelekl.kkeleelkqrikelqaeieke.kkkreeteereelleelkeleeelkklkkeleklakldpekveklkeete 145
                  ++  +++ +l k++le+l+ ++  l+ e++++ +++++  +er++ll+++++l++++ +l++e+++l+    e +  ++ + e
  MMETSP0890-20130614|37166_1 161 QRDHERVMTLnKQDLEKLQHELILLRSELSERtEREKRARTERRNLLDKVSNLNDTNAALSREVADLRAISDELIAMVESKQE 243
                  444445555516789999****9999999998444555558************************887777766655544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1218  (0.0890872); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.98
# Mc/sec: 723.80
//
Query:       MMETSP0890-20130614|37177_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   14.0   1.1      0.082   12.7   0.8    1.6  1  PF00061.18 Lipocalin / cytosolic fatty-acid binding protein family


Domain annotation for each model (and alignments):
>> PF00061.18  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8     6e-06     0.082      19     114 ..      65     159 ..      35     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6e-06
                  HHHHTTEEEEEEEEEHTTEEEEEEEE..EETTEEEEEEEEEEEEEEEEEEEEEEEECTTEEEEEEEEEESSSEEEEEEEEEETSTEEEEEEEEESSSC CS
   PF00061.18  19 eekklrvyiaeikpteegnlevteie..kdggkceeesitakkteepgklgvefdeyldgrkvkvlttdydnylilylkkdkegkttlvaellsrdpe 114
                  +++k + + + +++ e  + ++t+i+  + g + +e    +k   epg++g++   +l + +  v++t+ +++ ++ +k+ ++gk  ++++++  d++
  MMETSP0890-20130614|37177_1  65 HQQKESTTETYYTF-EQTSTSLTIIKesWSGVHKRELV-FGKAYHEPGQIGKKVTAFLTS-DAVVVSTEMKGKTLVDSKSIEDGKVRIHLKVMVPDQT 159
                  44555555666666.44444444444448888777777.99999*********8887655.9999****************77999999999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       384  (0.0280866); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 715.38
//
Query:       MMETSP0890-20130614|37184_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-13   48.3   0.0    1.1e-12   47.9   0.0    1.2  1  PF03099.14 Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> PF03099.14  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0     8e-17   1.1e-12       3     125 .]      10     128 ..       8     131 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 8e-17
                  SSBSHH..HHHCHHCHHHHCTEEEESEB----....-EEEB-TTBBEEEEEEE-TSS.HCCCCGGGHHHHHHHHHHHHH.EEE.CCTCGG--EETTTEEEETTEEEE--EEEEET....CEEEE-SS-B CS
   PF03099.14   3 rrqkst..keevnleeleeggvvvarrqtgGr....rvwhspggnlaysllllpelksfklsdleayvlllvlavlealgelgpgetgipvkikwpnDllvngkKiaGilvesrrgatlhhltlgvgin 125
                  ++++st  +++++      + +v a rqt Gr    r+w +  gn+ +++ ++ +l   +   l  + l+++  ++++l    +  +  ++++kwpnD+l+++ K+aGil+e+ ++a l +    +g+n
  MMETSP0890-20130614|37184_1  10 EEVDSTmdEARRRMASFTVPYAVAAGRQTNGRgtrgRTWNDGIGNVKLTVAIPLAL---PAPILTLVPLRIGTIIHNVLS---QYVQLDSLRLKWPNDVLLDQGKVAGILLEIEGQALLVG----IGVN 128
                  6778887666667777777889999****************999********9777...544555568888888889994...22344577799*********************555555....5544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:00.93
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|37201_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-44  151.3   0.1    2.1e-28   99.1   0.0    2.3  2  PF01997.11 Translin family


Domain annotation for each model (and alignments):
>> PF01997.11  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.8e-17   2.4e-13       9     197 ..      19     184 ..      16     187 .. 0.92
   2 !   99.1   0.0   1.6e-32   2.1e-28       2     197 ..     213     383 ..     212     384 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.8e-17
                  HHHHHHHHHHHHHHHHCCT-GG---HHHHHHHHHHHHHHHHHS-......---HHHHCCCTHHHHHHHHHHHHHHHHHH------HHHHHHH---BSSTT---B--HHHHH---HHHHHHHHHHHHHHHH---HSHHHHHHHH--------TTS--.....-----HHHHHHHHHHHHHHHHHHHC--- CS
   PF01997.11   9 kisrditalskkiifavhridaeeaeeiikeakerlkklsellasvaelqgenyyrysrqlsralqeliealtfahylktqsLlsleevgeilevevnkeeefhvteedYllGlfdltGELmRfainsvtlgdyekpleileflrelyagfellnlprahkknddlrkKldvlrqsvekvervvydlsv 197
                  ++sr+i ++++++   ++++d   a+++i+ ak  l  + +++    e ++ + +  s+ ls+al+ l  + ++ ++ ++++++ +++                 + ++Y+ Gl++ + EL R+++ + tlgd+++ +     +++l++ +  ++      +n  lr+K+d+l++ ++k  +++y+ s+
  MMETSP0890-20130614|37201_1  19 EASREIGKNCRSALLELQNGDLGRAANEIAAAKLSLGTIPKKVL---EPEDCKAL-RSGGLSSALESLSSVDILLYFYQHGQFPEMNQEI--------------YEDAEYVAGLLEAAQELARYSVRRATLGDVKSVKICQSHVEQLNEALLKFDF-----RNGPLRRKYDGLKYALRKLMDILYEQSL 184
                  589************************************98888...45555555.5778999*********************998766..............5789******************************999***************.....899*********************9875 PP

  == domain 2    score: 99.1 bits;  conditional E-value: 1.6e-32
                  HHHHHHHHHHHHHHHHHHHHHHHCCT-GG---HHHHHHHHHHHHHHHHHS-......---HHHHCCCTHHHHHHHHHHHHHHHHHH------HHHHHHH---BSSTT---B--HHHHH---HHHHHHHHHHHHHHHH---HSH...HHHHHHH--------TTS--.....-----HHHHHHHHHHHHHHHHHHHC--- CS
   PF01997.11   2 drRErlikisrditalskkiifavhridaeeaeeiikeakerlkklsellasvaelqgenyyrysrqlsralqeliealtfahylktqsLlsleevgeilevevnkeeefhvteedYllGlfdltGELmRfainsvtlgdyek...pleileflrelyagfellnlprahkknddlrkKldvlrqsvekvervvydlsv 197
                  ++RE lik +rd+++ sk++ifa hr++  +++e ++ ak++++++ + ++        +++r +++l+++l+e +ea++f+++l+  ++l +e++               ++ ++Yl Gl+dltGE  R a+++ t+ ++++   +   +  +  ly +++ l++        +l kKld+l  sv+k e++ y+ls+
  MMETSP0890-20130614|37201_1 213 AARELLIKQCRDVQKASKQAIFAAHRGEIVKSSEYLASAKTKYEQILNGIQ-------FPQLRKQGALTACLEEWAEAALFQAWLEDFRILDMEQMP-------------YLSADEYLGGLADLTGEVGRVAVKAATNRNVDTvekAHATNLAVLTLYVSIQDLPP--------KLAKKLDALHTSVNKLETLKYELSL 383
                  78************************************************9.......9**************************************.............89******************************977744444556689999999988........79*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       541  (0.0395699); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.78
# Mc/sec: 1287.27
//
Query:       MMETSP0890-20130614|37224_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 440.06
//
Query:       MMETSP0890-20130614|37206_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-07   29.1   0.1    2.5e-06   26.8   0.0    2.2  2  PF01465.15 GRIP domain


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.099   1.4e+03      18      31 ..     397     411 ..     396     412 .. 0.87
   2 !   26.8   0.0   1.8e-10   2.5e-06       3      45 ..     459     501 ..     457     502 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.099
   PF01465.15  18 qke.sngreqllpVi 31 
                  q+e +++r++ l+++
  MMETSP0890-20130614|37206_1 397 QREyKQYRSNALKAM 411
                  788899******997 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.8e-10
   PF01465.15   3 anleYLKNVllqFLeqkesngreqllpVistlLkFseeekqki 45 
                  a l+YLKN + ++L +   + re++ ++i ++L+Fs++ek  i
  MMETSP0890-20130614|37206_1 459 AKLQYLKNLMAKYLATAQAQPREHMERAIVMVLNFSDDEKAAI 501
                  679************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1823  (0.133338); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.38s 00:00:01.39 Elapsed: 00:00:00.57
# Mc/sec: 2156.72
//
Query:       MMETSP0890-20130614|37207_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-13   48.8   0.0    7.1e-13   48.0   0.0    1.3  1  PF01129.13 NAD:arginine ADP-ribosyltransferase
    7.9e-05   21.8   0.0     0.0011   18.0   0.0    2.2  1  PF03496.9  ADP-ribosyltransferase exoenzyme


Domain annotation for each model (and alignments):
>> PF01129.13  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0     1e-16   7.1e-13      58     214 ..     350     507 ..     335     515 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 1e-16
   PF01129.13  58 pegfkdehgvAllaYtssselyrelneavreaGrsreeylknfdfkalhflLtraLqlLrkdsqrcsq..vyRgvkglrfsrakkgksvRfgqFtssslkkkvae.....efgedtlfsiktclgvpIkefskfpeeeevLIppfevFkvtnlsk.eqgkakiqL 214
                   + +  ++  A+ +Yt++  lyr ln+a+r   rsr +      f  l  +  +a  +L+  s  +s+  +yRg++         gk v   +  s   ++ va+     +fg +t+f+i+++ ++ ++++s ++ e+e ++ p +  +v  ++k +q++  i+L
  MMETSP0890-20130614|37207_1 350 APPLTLDQKAAIFLYTGN-SLYRRLNDALRSPDRSRVNA----YFLYLRQF-ISAYDALST-SAISSRplLYRGIRKNLTVHYTCGKIVVWWAVSSCTPNRDVATnfaggKFGGGTIFHIQSSTAISVRHISAYQAEDEFILAPGTSLQVLSVTKgTQKHCAIIL 507
                  4456667889********.9**********866666432....22223222.357777777.44444458*****954444567888999999999999*****99999999****************************************9998666666554 PP

>> PF03496.9  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-07    0.0011      13     178 ..     350     502 ..     338     514 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-07
    PF03496.9  13 kekltesekeaireYtgsd.ysdINnyLrqnkgerndllsselekkIknldsaleksripenitvYRrvdekelgleigseekvsefeakvkgkvfkekgyvSTslvkdtaasfggrei.lleltvpkgtegayisplslypgeaEvLlprgltykvnkitlaeskgk 178
                  +  lt ++k+ai  Ytg++ y+++N +Lr+ + +r +     l++ I   d al+ s i++   +YR+            ++++      + gk++   + +S + ++d+a++f+g ++   ++   + + ++ ++ +s+y+ e E +l  g++++v ++t  ++k +
  MMETSP0890-20130614|37207_1 350 APPLTLDQKAAIFLYTGNSlYRRLNDALRSPDRSRVNAYFLYLRQFISAYD-ALSTSAISSRPLLYRGI-----------RKNLTV--HYTCGKIVVWWAVSSCTPNRDVATNFAGGKFgGGTIFHIQSSTAISVRHISAYQAEDEFILAPGTSLQVLSVTKGTQK-H 502
                  445799**********8655*********9996666555477888877766.9***************7...........444433..346899999999999999999999999996624688888999***************************888886444.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.42s 00:00:01.28 Elapsed: 00:00:00.77
# Mc/sec: 1615.21
//
Query:       MMETSP0890-20130614|37234_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0079   15.8   0.0      0.036   13.7   0.0    2.0  2  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.6e-06     0.036      27      69 ..      66     110 ..      19     121 .. 0.74
   2 ?   -0.5   0.0     0.075     1e+03      35      63 ..     192     220 ..     163     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.6e-06
                  EEECTTE.EEEEE--BSS-SSEEEEEEEEEE.ESCGGGTEEEEEE CS
   PF00168.25  27 slggaks.kkkrTrvikntlnPvWnekftfe.vvaeelaeleleV 69 
                  ++gg  +  +++++v+  t  P+Wne+f++  v++  + +l + V
  MMETSP0890-20130614|37234_1  66 GIGGPLVlDRAKSSVKLWTPTPRWNETFSLGsVSDIRTIDLVILV 110
                  55664456789******************9944444443365555 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.075
                  EEEE--BSS-SSEEEEEEEEEEESCGGGT CS
   PF00168.25  35 kkrTrvikntlnPvWnekftfevvaeela 63 
                  k+ T++ + ++nP+  e+ +f ++ + la
  MMETSP0890-20130614|37234_1 192 KRSTSTDDLSENPIPSEHHSFGFSSNGLA 220
                  58899999999999888888876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       181  (0.0132387); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:01.05
# Mc/sec: 709.78
//
Query:       MMETSP0890-20130614|37213_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-26   92.3   0.0    7.8e-26   90.9   0.0    1.7  1  PF12295.3  Symplekin tight junction protein C terminal
  ------ inclusion threshold ------
      0.029   14.2   2.4       0.77    9.7   0.0    3.4  3  PF12765.2  HEAT repeat associated with sister chromatid cohesion
       0.12   12.5   0.2       0.12   12.5   0.1    6.2  7  PF13646.1  HEAT repeats
        1.2    9.2   9.2        1.8    8.7   0.0    4.8  5  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF12295.3  Symplekin tight junction protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   2.3e-29   7.8e-26      17     181 ..     797     974 ..     785     976 .. 0.93

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 2.3e-29
    PF12295.3  17 vlkllpklikl.ekkelvkevlnrilklp.eaateesvltpsellvalhnideekdvdlkkivdaldlcfekkevftsdvlaaalnqiveq....eplpllfmrtliqalkkfps.lreFvv.nilskLi.qkkvwknkklwkgflkcikklkp....ssfevllqLpeeqleellkk 181
                  + ++lp+l+++ +++++++ +l+r  + +   ++ es+l+ s ++ alh +++ + v++k+i+dal++c++ k++f   +l  a++++ +     ++lp l++r  i+alk +ps +  Fv+ +il +L  +  +w+n+ lwkgf++++ +l      + f++l+ Lp++ql ++lk+
  MMETSP0890-20130614|37213_1 797 FRHVLPTLLSQiDDDAILSAALKRAAASApFDQHAESSLNGSGVIEALHALEPDNPVPMKRITDALTVCLKAKDTFGALTLREAIDRMTDTnkpsKTLPALLLRATILALKMYPSqFAAFVAnTILTRLAtHFAIWTNPPLWKGFIMLCTMLSEengpNCFDALVALPAPQLTTVLKS 974
                  6799*******99***********99877567889999*************77766***********************************99*9******************96489***********9788******************9987888******************97 PP

>> PF12765.2  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00022      0.77      18      40 ..      31      53 ..      26      55 .. 0.85
   2 ?    2.7   0.0     0.034   1.2e+02       6      27 ..     432     453 ..     430     454 .. 0.88
   3 ?   -2.7   0.1       1.7   5.8e+03      32      42 .]     534     544 ..     533     544 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00022
    PF12765.2 18 evqeaiarrltDsspsVRdAald 40
                 ++ + +a+ ++D s+ VR+A++ 
  MMETSP0890-20130614|37213_1 31 FLVNGVAEMASDGSAAVRKAVVR 53
                 567889999************95 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.034
    PF12765.2   6 lvekdptlLdapevqeaiarrl 27 
                  l++ +pt+    +v++++ +rl
  MMETSP0890-20130614|37213_1 432 LAALEPTVDLERDVRDLVLARL 453
                  77889****************9 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.7
    PF12765.2  32 psVRdAaldLl 42 
                  p V dAa+dLl
  MMETSP0890-20130614|37213_1 534 PRVSDAAIDLL 544
                  56669****98 PP

>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.6e-05      0.12      33      66 ..      33      66 ..      10      95 .. 0.79
   2 ?   -1.2   0.1      0.64   2.2e+03      33      72 ..     166     215 ..     129     230 .. 0.47
   3 ?   -2.4   0.0       1.5   5.2e+03      20      71 ..     303     328 ..     295     338 .. 0.47
   4 ?   -1.2   0.1      0.68   2.3e+03      39      58 ..     416     435 ..     409     467 .. 0.62
   5 ?    1.0   0.9      0.13   4.6e+02      20      83 ..     526     612 ..     506     617 .. 0.57
   6 ?   -2.3   0.0       1.5     5e+03      29      47 ..     676     697 ..     662     702 .. 0.66
   7 ?    0.3   0.2      0.22   7.5e+02      41      73 ..     790     824 ..     740     836 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-05
    PF13646.1 33 lpaLlelLkdsdpevRraAaeaLgklgdpealpa 66
                 ++ + e+++d +++vR+a+++ L++++++++l+a
  MMETSP0890-20130614|37213_1 33 VNGVAEMASDGSAAVRKAVVRFLSRIASQRVLAA 66
                 78889999*******************9986532 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.64
    PF13646.1  33 lpaLlelLkds.dpevRraAaeaLgkl...g......dpealpaLlklld 72 
                  + aL  lL++s + e+ ++++  ++ l          ++e ++aL+ +l+
  MMETSP0890-20130614|37213_1 166 VTALATLLTSSlHTELEETVLSQIQFLvsaPrrmaivHREIVSALISALE 215
                  55555555443233333333333332211111222334555555555555 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.5
    PF13646.1  20 aieaLg.....qlgseealpaLlelLkdsdpevRraAaeaLgklgdpealpaLlkll 71 
                  aie+++     q  s                               ++al+ L++ l
  MMETSP0890-20130614|37213_1 303 AIELIAplekpQSTS-------------------------------QDALDLLCRQL 328
                  444444333333333...............................33444444433 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.68
    PF13646.1  39 lLkdsdpevRraAaeaLgkl 58 
                  l +++++++R+a +  L++l
  MMETSP0890-20130614|37213_1 416 LSESDSESIREALCAKLAAL 435
                  33444455555555444444 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.13
    PF13646.1  20 aieaLg..qlgseealpaLlelL..kdsdpevRraAaeaLgkl.................gdpea.lpaLlkllddde.davvreaa 83 
                   +e+++   + s++a+++L++l+  + ++ e+ ++A++   +                  +++e    aLl+l ++++ d++vr  a
  MMETSP0890-20130614|37213_1 526 FAETMClaPRVSDAAIDLLVSLTcvREPSTEMNENALRTFKARrvglgllalremalqrpASREIlCTALLQLTRRPDvDQQVRDKA 612
                  554444223446678999999888888999999999998886644444443333333222244432356666666654356666665 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 1.5
    PF13646.1  29 seealpaLlelL....kdsdpev 47 
                  + ++lp+L+el     +d++p +
  MMETSP0890-20130614|37213_1 676 HLDLLPELVELVasfeSDEHP-M 697
                  557788888887666344444.3 PP

  == domain 7    score: 0.3 bits;  conditional E-value: 0.22
    PF13646.1  41 kdsdpe.vRraAaeaLgklgdpealp.aLlklldd 73 
                  +d d +  R+     L++++d++ l+ aL++++++
  MMETSP0890-20130614|37213_1 790 DDADTSgFRHVLPTLLSQIDDDAILSaALKRAAAS 824
                  44442214444444555555555543133333322 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00054       1.8       2      29 ..      33      60 ..      32      62 .. 0.89
   2 ?   -3.9   0.1         4   1.4e+04      21      27 ..     129     135 ..     129     136 .. 0.85
   3 ?    2.5   0.0     0.052   1.8e+02       7      27 ..     415     435 ..     412     438 .. 0.88
   4 ?   -0.4   0.1      0.45   1.5e+03       4      21 ..     594     613 ..     591     615 .. 0.80
   5 ?   -2.6   0.0       2.2   7.6e+03       1      13 [.     800     812 ..     800     824 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00054
                 HHHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17  2 lPlllkllnDpspeVReaAaeaLgalae 29
                 ++ + ++ +D s+ VR+a+++ L+++a+
  MMETSP0890-20130614|37213_1 33 VNGVAEMASDGSAAVRKAVVRFLSRIAS 60
                 5667899*******************97 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4
                  HHHHHHH CS
   PF02985.17  21 aeaLgal 27 
                  +++Lgal
  MMETSP0890-20130614|37213_1 129 CQCLGAL 135
                  79***98 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.052
                  HHHTSSSHHHHHHHHHHHHHH CS
   PF02985.17   7 kllnDpspeVReaAaeaLgal 27 
                   l++++s+++Rea +  L+al
  MMETSP0890-20130614|37213_1 415 ALSESDSESIREALCAKLAAL 435
                  57899**********999887 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.45
                  HHHHHHT..SSSHHHHHHHH CS
   PF02985.17   4 lllklln..DpspeVReaAa 21 
                  +ll+l +  D + +VR+ A+
  MMETSP0890-20130614|37213_1 594 ALLQLTRrpDVDQQVRDKAT 613
                  67778889999*****9997 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 2.2
                  HHHHHHHHHTSSS CS
   PF02985.17   1 llPlllkllnDps 13 
                  +lP ll+ + D++
  MMETSP0890-20130614|37213_1 800 VLPTLLSQIDDDA 812
                  6899999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       992  (0.0725571); expected 273.4 (0.02)
Passed bias filter:                      412  (0.0301346); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.57u 0.39s 00:00:01.96 Elapsed: 00:00:01.45
# Mc/sec: 1675.80
//
Query:       MMETSP0890-20130614|37242_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-10   38.6  14.3    7.8e-10   38.2   9.9    1.1  1  PF00520.26 Ion transport protein


Domain annotation for each model (and alignments):
>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   9.9   5.7e-14   7.8e-10      28     198 ..       6     184 ..       2     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 5.7e-14
                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT..-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXX.XXXXXXXXX CS
   PF00520.26  28 tylrdpwnilDflvvlpslvslilrllnkas....gllavlrllrvlRllrllsrieglrtllislirsvkallnvlllllfvlfifaiigvqlfggklrkkcvke..kagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatl...ragskigyiyfvifiilgsflllnlliav 198
                  +y++     +Df+v+++++++ i+  l+  +    +l+ +l +lr+lRl+ l+  i+++++l +++ ++++a + v+ +l+   + fa +g q+fgg  +++      +   ++n++  nf+ f+ +f+ lf ++ + g  +   +++         g+i+f+ ++i+g +++ n++ a 
  MMETSP0890-20130614|37242_1   6 EYWMLQVHKFDFFVTVGLFLAAIYWVLPC-TmiseSLMHYLIVLRLLRLVVLIANIQRFQILGQCISTIIPASIGVVGILFASASLFAAFGSQFFGGLIYDDAPALqdTDYVDENYDILNFNDFALSFMPLFAMVISGGPYTEFIEAIdhvSKFQGAGIIFFIAWYIVGCLIMSNIFSAF 184
                  5666667789******9999998866663.36999999***********************************************************9987776558899999*******************98888775555555556987778899******************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       604  (0.0441779); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 782.81
//
Query:       MMETSP0890-20130614|37246_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      348  (0.0254535); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.87
# Mc/sec: 206.58
//
Query:       MMETSP0890-20130614|37248_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.5   0.1    0.00027   20.7   0.0    1.4  1  PF01926.18 50S ribosome-binding GTPase
     0.0027   17.0   0.0     0.0039   16.5   0.0    1.3  1  PF13555.1  P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.03   13.3   0.0       0.03   13.3   0.0    1.2  1  PF03193.11 Protein of unknown function, DUF258


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.9e-08   0.00027       1      19 [.      63      81 .]      63      81 .] 0.91

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 5.9e-08
                 EEEEE--TT---HHHHHHH CS
   PF01926.18  1 evaivGrpNvGKStLinaL 19
                 e+a++Gr+NvGKStL+ aL
  MMETSP0890-20130614|37248_1 63 EMAFIGRSNVGKSTLLGAL 81
                 589************9887 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.5e-07    0.0039      19      43 ..      58      81 .]      48      81 .] 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.5e-07
    PF13555.1 19 idpkgkntlltGasGsGKSTllDAi 43
                  d +   ++++G+s +GKSTll A+
  MMETSP0890-20130614|37248_1 58 NDGA-AEMAFIGRSNVGKSTLLGAL 81
                 4433.3699************9885 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.6e-06      0.03      28      55 ..      51      81 .]      21      81 .] 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.6e-06
                 HHHHHCTT...SBEEEE-------HHHHHHH CS
   PF03193.11 28 elaellkd...ktsvlvGqSGvGKSsLinal 55
                 el+++l +     ++++G+S vGKS+L+ al
  MMETSP0890-20130614|37248_1 51 ELNHELPNdgaAEMAFIGRSNVGKSTLLGAL 81
                 555555443234578************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       253  (0.018505); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.91
# Mc/sec: 213.30
//
Query:       MMETSP0890-20130614|37243_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-34  119.8   0.3    1.5e-34  119.3   0.2    1.1  1  PF00848.14 Ring hydroxylating alpha subunit (catalytic domain)


Domain annotation for each model (and alignments):
>> PF00848.14  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.2   1.1e-38   1.5e-34       7     206 ..      56     250 ..      46     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 119.3 bits;  conditional E-value: 1.1e-38
                  --HHHHH.ESS-HHHHHHHHHHSTT---TT---------TTS---------------------HHHH---HHHHHHH--HHHHHH----GGGEE---EEETTTEEEE..TTTTEEEEEEE-----EEEEEEEEE-TT..S-HHH....HHHHHHHHHHHH-.-TTT---HHHHHH---------B---S-SSSTTT---HHHHHHH CS
   PF00848.14   7 vaswtle.ikaNWKlavenflecYHlgvlHpsllaaldlddqdgaeiaevegigphgsgsgsvlrlepgaksrelraeaaapeaaglpdeprrgslnytlFPnlsilvqpdhlvlyrviPtspdktrvrvdlyvppdetaseea....keelaavwertfg.veseDielveevQrglrsrgyepgplsgdqElavrhfhewvrda 206
                  ++++tl+ i+aNWK+++enf+e+YHl+++Hp+l++++   +++     + +g g++  ++    ++  ++++   ++++a p++  ++ ++  +++++ ++Pn++++++p+h +   v+P++++++r +++++++p     e++    +eel ++++++++ v+seD+ ++e+vQrg++++ y  g+ls ++E+ +++ +++v d 
  MMETSP0890-20130614|37243_1  56 ARRSTLDnIQANWKILLENFSEYYHLPAVHPELCTVSGVAEHY-----RTQGSGKYLGFA---TAPLSNGGT-FVDPDVAPPLPGIENTRNALAARHILIYPNVFMSFYPHHIMRCIVEPIDANTSREHFHVLAHPT--LHERLghekAEELLDNFFAFHTkVNSEDMGICEAVQRGMHAQPYLGGRLSFRFEETIHRYQNMVVDS 250
                  455666689************************9999999999.....555555555555...222333333.33333444444456667778899****************************************9..55555555566666666666668*********************7888999***********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.75
# Mc/sec: 869.08
//
Query:       MMETSP0890-20130614|37244_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   17.4   0.0      0.006   16.4   0.0    1.5  1  PF06470.8 SMC proteins Flexible Hinge Domain
  ------ inclusion threshold ------
      0.047   13.7   5.0       0.13   12.3   0.2    2.8  2  PF13864.1 Calmodulin-binding
       0.12   12.0   8.5       0.14   11.8   1.4    2.4  2  PF12718.2 Tropomyosin like
        1.6    7.2   6.6       0.33    9.5   2.2    1.5  2  PF10337.4 Protein of unknown function (DUF2422)


Domain annotation for each model (and alignments):
>> PF06470.8  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-06     0.006       3     116 ..     583     707 ..     581     710 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.8e-06
    PF06470.8   3 gvlGrladliev.degyekAveaalgnrlqaivvedeetakkiieflkkan...agra.tflpldrikqknssdskneve..........rpggavplidlveypd..eklrkalryllgdtlvvdsldeA 116
                  +++G + +l+ v  ++ +k +++ lg +++ ++++de+++++  +  ++ +   +  + t+ + ++   ++++      +           +++a  + d+ve +      + +   ++g++++ d+ + A
  MMETSP0890-20130614|37244_1 583 RIVGKIHELFVVqNDEHAKYLAWHLGRAMDLLITKDEQSGEEYARTDQQTKpitTYYLgTMSSYKTGPHDKIA------DpqrknaakiwEKSKAILASDCVELVIdsVNTQTMKTAIFGKIILFDDNKDA 707
                  699*********************************************6633322222222222222222222......1333445777888888888888887551133344558999999999998877 PP

>> PF13864.1  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.8e-05      0.13      30      72 ..     450     492 ..     432     522 .. 0.89
   2 ?    2.3   0.4      0.05   1.7e+02      29      73 ..     766     810 ..     746     824 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.8e-05
    PF13864.1  30 apkgvrllseeErlellegLkkkweelnkelqklplvldtlsk 72 
                   +++ ++++++E +e l+ L ++++++++e++++ +++d+   
  MMETSP0890-20130614|37244_1 450 SHEASKEIQKKEAEESLKLLSQRKTDIEREYNSIQIRMDSFID 492
                  56788999*****************************998765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.05
    PF13864.1  29 eapkgvrllseeErlellegLkkkweelnkelqklplvldtlskk 73 
                  ++ ++++++ e  r++ l+++k + ++   +lq++   ++ ++ k
  MMETSP0890-20130614|37244_1 766 SNYNYLKQMCELIRETDLKEMKHNFDNFGVQLQRIKAQIEDARSK 810
                  455778888888899999999999999999999988887766654 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.4   4.2e-05      0.14      15      72 ..     458     516 ..     444     528 .. 0.81
   2 ?    3.7   0.4     0.013        43      33      73 ..     779     819 ..     766     828 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.2e-05
    PF12718.2  15 kaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlke.akekleekekkk 72 
                  + +e+ee+lK l q+++++E+e++s+q ++++  +e+ k+ ++l++  +++  +k +++
  MMETSP0890-20130614|37244_1 458 QKKEAEESLKLLSQRKTDIEREYNSIQIRMDSFIDEISKIYTNLSTdIQQNICNKLQHA 516
                  45799************************************999751455555555555 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.013
    PF12718.2  33 kEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkt 73 
                  +E ++k++++  ++   ++ ++++q+++a++kl++++k + 
  MMETSP0890-20130614|37244_1 779 RETDLKEMKHNFDNFGVQLQRIKAQIEDARSKLDATKKSSR 819
                  57788888888888888888888888888888888777654 PP

>> PF10337.4  Protein of unknown function (DUF2422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.2   9.6e-05      0.33     332     426 ..     443     545 ..     415     572 .. 0.76
   2 ?   -3.2   0.0       0.7   2.4e+03     243     271 ..     783     811 ..     764     822 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 9.6e-05
    PF10337.4 332 heklfsaieekyaevgayetkesikllear....aaer.....sltvse.ldevmkalhepfaelleavdeglehivewleaanrfriyslllpknkkkhkekqk 426
                   + ++ + +e ++e+++ e +es+kll +r    +  r     ++ +++ +de++k+ +  ++++ +++++ l+h++ ++++    ++++ +l++++ +h +++ 
  MMETSP0890-20130614|37244_1 443 IKVVDFKSHEASKEIQKKEAEESLKLLSQRktdiE--ReynsiQIRMDSfIDEISKIYTNLSTDIQQNICNKLQHASHHVDLRIGKKMFAQALFSANTQHYQQEL 545
                  45556677777788888888888888887666441..23444455554448*********************************************999986654 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.7
    PF10337.4 243 leslepsnesealnfkklekaitkirelv 271
                  l+++++  +++ ++++++++ i  +r++ 
  MMETSP0890-20130614|37244_1 783 LKEMKHNFDNFGVQLQRIKAQIEDARSKL 811
                  45555555555556666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       980  (0.0716793); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.23u 0.40s 00:00:01.63 Elapsed: 00:00:01.21
# Mc/sec: 1659.63
//
Query:       MMETSP0890-20130614|37252_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-46  156.4   0.1    8.2e-46  156.2   0.1    1.0  1  PF00063.16 Myosin head (motor domain)
     0.0002   20.2   0.0    0.00029   19.7   0.0    1.1  1  PF00437.15 Type II/IV secretion system protein
      0.001   18.5   0.0     0.0014   18.0   0.0    1.2  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.007   15.7   0.0     0.0091   15.3   0.0    1.2  1  PF00158.21 Sigma-54 interaction domain
     0.0092   15.9   0.0      0.011   15.6   0.0    1.4  1  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.026   13.4   0.0       0.03   13.2   0.0    1.1  1  PF02277.12 Phosphoribosyltransferase
      0.027   14.7   0.0       0.03   14.5   0.0    1.2  1  PF13191.1  AAA ATPase domain
      0.054   12.4   0.1      0.084   11.8   0.1    1.3  1  PF06414.7  Zeta toxin
      0.061   12.9   0.0      0.072   12.7   0.0    1.1  1  PF13934.1  Nuclear pore complex assembly
      0.089   10.4   0.0      0.089   10.4   0.0    1.1  1  PF02689.9  Helicase


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.1     6e-49   8.2e-46      60     180 ..      11     146 .]       3     146 .] 0.93

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 6e-49
                  -GGGS-S-HHHHHHHHHHHHHHH.....TSEEEEEEE-------HHHHHHHHHHHHHHS-SSTT...........-TTHHHHHHHHHHHHHHH---BEESSETTB-----EEEEEEBTTTBB---EEE--S--GGG CS
   PF00063.16  60 kreelppHifalAdeAYrsmlrr.....kenqsivisGESgagkTeatkkliqylasvssstek..........aeeeeleskilqanpileafgnaktlrnnnssrfGkfleiqfdasgsivGakietylLeksR 180
                  ++++l+pH++ +Ad AYr+m +r     + +qsi+isGESgagkTe+tk++++yl++v + t++          ++e ++ + +lq+npileafgna+t+rn+nssrfGk++e+ f a+g +vGa++etylLek R
  MMETSP0890-20130614|37252_1  11 SHDNLDPHVYTVADAAYRDMANRiaqnvAASQSILISGESGAGKTESTKIVMRYLTVVGAGTTDpfaenknepnSKEATVMDRVLQSNPILEAFGNARTVRNDNSSRFGKYIELDFSARGGMVGASVETYLLEKIR 146
                  46789***************98754444678******************************9999********99999********************************************************88 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.1e-07   0.00029     102     152 ..      15      65 ..       9      69 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.1e-07
   PF00437.15 102 lsledlaakgalkkklaevlrqavqargnilvsGgTgsGKttllnallaei 152
                  l+ + +  ++a  +++a+ ++q v+a ++il+sG  g GKt ++++++ ++
  MMETSP0890-20130614|37252_1  15 LDPHVYTVADAAYRDMANRIAQNVAASQSILISGESGAGKTESTKIVMRYL 65 
                  555567777888899****************************99988765 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06    0.0014       3      39 ..      29      65 ..      27      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-06
   PF02367.12  3 elgkrlaellkagdvvlLsGdlGaGKTtlvkglakgl 39
                 ++++r+a+++ a++ +l+sG+ GaGKT+ +k +++ l
  MMETSP0890-20130614|37252_1 29 DMANRIAQNVAASQSILISGESGAGKTESTKIVMRYL 65
                 6899************************999887766 PP

>> PF00158.21  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.7e-06    0.0091       5      43 ..      24      62 ..      20      83 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.7e-06
                 SHHHHHHHHHHHHHTTS-S-EEEE-------HHHHHHHH CS
   PF00158.21  5 sealkelleqikkvaktdltvlitGesGtGKellAraih 43
                 ++a +++ ++i++ ++ + ++li GesG+GK+   + + 
  MMETSP0890-20130614|37252_1 24 DAAYRDMANRIAQNVAASQSILISGESGAGKTESTKIVM 62
                 567788899999999999*************98777665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.3e-06     0.011       4      30 ..      41      67 ..      29     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.3e-06
    PF13401.1  4 agilvvtGesGvGKTtllrrlarqlde 30
                 +++++++GesG+GKT + + ++r l  
  MMETSP0890-20130614|37252_1 41 SQSILISGESGAGKTESTKIVMRYLTV 67
                 6789*************9999887654 PP

>> PF02277.12  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05      0.03     130     188 ..      24      76 ..       7     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.2e-05
                  HHHHHHHHHHHHHHHT.--SEEEE--B---THCCCHHHHHHH-...HHHH...-----G CS
   PF02277.12 130 eaaleaGielvkeelskgadllivGemgignTttaaallaaLlgadaeevvGrGtgldd 188
                  +aa++  ++ +++++++   +li Ge+g+g T +   ++  L+      vvG Gt  + 
  MMETSP0890-20130614|37252_1  24 DAAYRDMANRIAQNVAASQSILISGESGAGKTESTKIVMRYLT------VVGAGTTDPF 76 
                  566777778889999*************************998......9998876542 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.2e-05      0.03      17      60 ..      35      73 ..      24     122 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.2e-05
    PF13191.1 17 rr.vsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfd 60
                 ++ v++++ ++l++G+sG GK+  ++      + + l + ++++ 
  MMETSP0890-20130614|37252_1 35 AQnVAASQ-SILISGESGAGKTESTKI-----VMRYLTVVGAGTT 73
                 33244444.9************88777.....6666666665555 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.1e-05     0.084      14      39 ..      39      64 ..      25      73 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.1e-05
    PF06414.7 14 ekpkavllgGqpGAGKtslaelllee 39
                 +  +++l+ G  GAGKt+  + + + 
  MMETSP0890-20130614|37252_1 39 AASQSILISGESGAGKTESTKIVMRY 64
                 67789*************98877665 PP

>> PF13934.1  Nuclear pore complex assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.2e-05     0.072     120     173 ..      40     117 ..      19     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.2e-05
    PF13934.1 120 e..............readslalavlrtvkpplsss..........ealtallvllangsiteAfmfaRkysdeerkk 173
                  +              +e++++++++l +v+  ++++          ++ t++ ++l+ + i eAf  aR+  ++++++
  MMETSP0890-20130614|37252_1  40 AsqsilisgesgagkTESTKIVMRYLTVVGAGTTDPfaenknepnsKEATVMDRVLQSNPILEAFGNARTVRNDNSSR 117
                  455555556666664588899*********9999999********8888888888**************998877543 PP

>> PF02689.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.5e-05     0.089      61      99 ..      42      80 ..      12     119 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.5e-05
    PF02689.9 61 saylitGtAGaGKstsiqtlaenldCvitgatrvAaqnl 99
                 ++ li+G  GaGK+ s +++ + l  v  g+t   a n 
  MMETSP0890-20130614|37252_1 42 QSILISGESGAGKTESTKIVMRYLTVVGAGTTDPFAENK 80
                 6789***************************98877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 530.10
//
Query:       MMETSP0890-20130614|37255_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      179  (0.0130925); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.36s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 401.85
//
Query:       MMETSP0890-20130614|37256_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:00.68
# Mc/sec: 324.21
//
Query:       MMETSP0890-20130614|37254_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-10   39.7   0.0    6.1e-10   38.7   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.087   11.0   0.0       0.13   10.4   0.0    1.2  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0     9e-14   6.1e-10       4      77 ..     274     361 ..     272     362 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 9e-14
                  HH----EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHH..............HHHH------T CS
   PF00271.26   4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts..............yiQriGRtgRa 77 
                  +k g+++ +l g+lp++ r+  le  ++g+ +v+v+t+v++ G++lp  +vV+     r+ ++               +Q++GR+gR 
  MMETSP0890-20130614|37254_1 274 QKAGVRASALFGKLPPEARRSQLEAARRGELDVMVTTDVIGHGLNLPIDDVVFTETRKRDMSGdkaepqlrslklweAAQIAGRAGRD 361
                  6889******************************************9999999888755555566667777788888**********6 PP

>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     2e-05      0.13      10      70 ..     239     299 ..     237     354 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2e-05
                  HHHHHHHHH----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-HHHHHHHHHHH CS
   PF00501.23  10 nrlaagLrklGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpaerlayilnds 70 
                  n la++L k  ++++ rVai++  +   + ++ a  kaG+ ++ l+  lp+e+ + +l+ +
  MMETSP0890-20130614|37254_1 239 NSLARFLVKTCLEEKRRVAIIAFSRNAVLSLAAASQKAGVRASALFGKLPPEARRSQLEAA 299
                  78***************************************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       498  (0.0364248); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.89
# Mc/sec: 2022.09
//
Query:       MMETSP0890-20130614|37260_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.6e-168  558.6   0.0   1.2e-167  558.1   0.0    1.2  1  PF00342.14 Phosphoglucose isomerase
  ------ inclusion threshold ------
       0.09   11.8   0.2       0.36    9.8   0.1    1.8  2  PF06255.8  Protein of unknown function (DUF1020)


Domain annotation for each model (and alignments):
>> PF00342.14  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  558.1   0.0  1.7e-171  1.2e-167       1     486 []      23     498 ..      23     498 .. 0.96

  Alignments for each domain:
  == domain 1    score: 558.1 bits;  conditional E-value: 1.7e-171
                  EECCSS..HHHHHHHHHHHHH...HHHHHHHHTHHHHBTTTTB...HHHHTTTT-....B.---BSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-..SEEEEE---------HHHHHHTGGGSGC..TSEEEE-----HHHHHHHHCCC-GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHHHHGCCHHHHEEEEESSHHHHHHHHHHGGGEEE--TT-----TTTST--.HHHHHH-..HHHHHHH---HHHHHHHHHS-GGG-HHHHHHHHHHHHHHT.---EEEEEESSGGGTTHHHHHHHHHHTT---.BCTT-.B.SSEEEEEEE....TGGGGTSHHHHH-.----EEEEEEEEEESST--BHHHHHHHHHHHHHHHHH.--BHHHHHHHHHH-HHHHHHHHH--.-.--EEEEE.ECE-STTT---HHHHHHHHHHH---TT-B-TT-----HHHHHHHHHHGGGH........SSHTTTHHHH CS
   PF00342.14   1 DySknkvddeileallklaeeaklkakreamfagekinvtenravlHvalrersn.kpilvdGkdvlpevdkvldkmkefservrsgewkgatgkaikdvvniGiGGSdLGpllvieaLkkesen..elklffvsNvdgthiaevlkklnpettlivvvSKtfTTaEtilnarsarewlekklkekeavakrlvalstnakkvekfgideenmfafwdwvGGRYSvlsavG.lpialsiGfenieelleGaasidkhfssaplekNipvllalvsvwyvnflgaeteailpYdqaLerlaaylqqlsmESnGKgvdkdgvlvdletgsidfGepgtngqHslyqlihqGtrlipidfilavkkqqeelvhhkellsnflaqteaLavGktkeevkkeavkakietllphktftGnrPslsil.leeltpytlGalialyEhkvavqGvllginsfDqwGVElgKklakailkkleasek.vsgfdsstaaLi 486
                  D S+++ + e+ ++l++la++a++++kr+amfag+k+n te+rav+Hvalr++ +  p+lvdG+d lp ++k ld++ +fs++vrsgewkgatgk+++++++iGiGGS+LGp ++ eaLk +     +l+l+f++Nvd+++ ++  ++l++e+tl +vvSK+fTTaEt+lna+ ++ wl+ + +   +++k++va+st+ +  ekfgi+++n+f f d vGGR+Sv s vG lpial++Gf+ + ++l+Ga+++d hf++aple+N+pvll+l + +++ flg++++ailpY+qaL r+aa++qql+ ESnGK+v  dg+ +d+++g+i+fGepgtngqHs+yql+hq +r +p++fi+  k q   ++ h+el+ nf+aq++aLa+G+                  +hk f GnrPsls+l l++ +p+tlG+l++lyEh+v vqG+++ginsfDqwGV lgK+lak+++k +++++  ++ f+  t aL+
  MMETSP0890-20130614|37260_1  23 DCSRQRGTVETQSMLIDLAKKAEIETKRDAMFAGKKLNETEGRAVYHVALRAPLGhAPMLVDGEDQLPLIHKTLDRIEKFSKAVRSGEWKGATGKSLTTILAIGIGGSYLGPEFLYEALKAYGGIsqKLDLRFLANVDPVDFKRQTADLDTESTLAIVVSKSFTTAETMLNANAVKAWLLANPN-ITDISKHFVAVSTQLDLTEKFGIQATNVFPFGDYVGGRFSVHSPVGaLPIALAYGFDAVAQFLDGAHKMDLHFKNAPLEQNLPVLLGLWGLYNSTFLGYNAKAILPYSQALVRFAAHIQQLDCESNGKSVAMDGTPLDYQAGEIVFGEPGTNGQHSFYQLLHQ-GRTVPCEFIGFSKPQFDINSMHDELMCNFFAQPDALACGQHD----P----------NSHKFFPGNRPSLSLLiLDQASPFTLGKLLSLYEHRVEVQGFVWGINSFDQWGVQLGKVLAKQVAKAIKGDAAaKAAFNPATSALL 498
                  77999999********************************************975269***************************************************************965444899**************************************************9999.888****************************************************************************************************************************************************************.9**************************************981....1..........369**********9863799************************************************988651569999999885 PP

>> PF06255.8  Protein of unknown function (DUF1020)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   5.2e-05      0.36     233     285 ..     166     218 ..     147     232 .. 0.85
   2 ?   -1.0   0.0       0.1   6.9e+02      24      58 ..     446     482 ..     438     491 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.2e-05
    PF06255.8 233 rnlgllsaeaklaaisdladsaqlkkdaaeavrqWadenPnaaetveavlnvl 285
                  r+ + l +e+ la + + + ++      a+av+ W  +nPn+++  +  ++v 
  MMETSP0890-20130614|37260_1 166 RQTADLDTESTLAIVVSKSFTTAETMLNANAVKAWLLANPNITDISKHFVAVS 218
                  5678999*****99887776666667789**************9888887775 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.1
    PF06255.8  24 darGsvkervgkiqvidatahqlgnlliqqa..aieG 58 
                  + r +v+  v  i+ +d+   qlg++l +q   ai+G
  MMETSP0890-20130614|37260_1 446 EHRVEVQGFVWGINSFDQWGVQLGKVLAKQVakAIKG 482
                  4588899999999**************9875225666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.41s 00:00:01.26 Elapsed: 00:00:01.25
# Mc/sec: 968.13
//
Query:       MMETSP0890-20130614|37262_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-10   39.0   0.3      9e-10   38.1   0.2    1.5  1  PF00397.21 WW domain


Domain annotation for each model (and alignments):
>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   6.5e-14     9e-10       1      31 []     218     247 ..     218     247 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 6.5e-14
                  ---SEEE.E.E----EEEEETTT--EESS-- CS
   PF00397.21   1 lppgWeersddddGrvYYyNheTgetqWekP 31 
                  lppgWe+++ ++ G ++++Nh+ ++t+We+P
  MMETSP0890-20130614|37262_1 218 LPPGWERAVNSE-GATFFINHNDRTTHWEPP 247
                  8*****777578.*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       878  (0.0642188); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.44s 00:00:01.14 Elapsed: 00:00:00.93
# Mc/sec: 922.47
//
Query:       MMETSP0890-20130614|37264_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   27.0   0.0    1.7e-06   26.5   0.0    1.1  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-10   1.7e-06     229     324 ..      76     201 ..      68     210 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-10
                  -SEEE--HHHHHHHHHHCHC...........................CCTTTTT--EEEE-----THHHHHHHHHHTT.SEEEEEE--CGGSSESEECCS-HHH....CCH---EBSTTTEEEEEB CS
   PF00501.23 229 vtvlalvptvlelllkaiek...........................kkldlsslrlilsggeplspellerlreafggirivngYGltEttgvvtvslpgdee...tkpgsiGrplpgvevkivd 324
                  +t+ ++vpt+ ++++   +k                           +    +++r + sg+++lsp++++rl ++fgg++++ +Y ++E  +++   l    +    kpg++G +++ + + + d
  MMETSP0890-20130614|37264_1  76 PTWYSAVPTMHNAIVSYLKKyeplspnkkdelsgeqrfrknddsfqvDMPCYHRIRFVRSGAAALSPYDARRLSATFGGVPVLATYSMSEQMPISQPPLDYGRRqldIKPGTVGVAVATCLAVVTD 201
                  8999**************99*************************99999******************************************9875555555559999999999999988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       471  (0.03445); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.60
# Mc/sec: 1050.40
//
Query:       MMETSP0890-20130614|37268_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0023   17.4   0.5     0.0085   15.6   0.1    2.2  2  PF00646.28 F-box domain
     0.0093   15.5   1.0       0.51    9.9   0.2    3.0  2  PF12937.2  F-box-like
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.077   12.7   0.0    1.6  1  PF01337.13 Barstar (barnase inhibitor)


Domain annotation for each model (and alignments):
>> PF00646.28  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.9e-06    0.0085       7      36 ..       5      34 ..       5      36 .. 0.95
   2 ?   -2.8   0.0       1.1   4.9e+03       7      20 ..     119     132 ..     119     137 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
                 -HHHHHHHHTTS-HHHHHHHCTS-HHHHHH CS
   PF00646.28  7 PsevlenILerLpfsdllalrlVSkgwril 36
                 P+ev++ + ++L+++++l  r+V+  +r++
  MMETSP0890-20130614|37268_1  5 PLEVIRSVTSYLSPIERLVVRRVCEIFRQA 34
                 89**********************999986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
                  -HHHHHHHHTTS-H CS
   PF00646.28   7 PsevlenILerLpf 20 
                  +se++ +I++ +  
  MMETSP0890-20130614|37268_1 119 SSEIISKIFQGCTS 132
                  68999999985555 PP

>> PF12937.2  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00011      0.51       5      35 ..       5      35 ..       5      39 .. 0.94
   2 ?    2.7   0.0     0.021        95       7      26 ..     121     148 ..     120     157 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
                 -HHHHHHHHTTS-HHHHHHH----HHHHHHH CS
    PF12937.2  5 PdEiLlqIFsyLppsdLlrlalVCrrWrrva 35
                 P E++  + syL+p + l +++VC  +r++a
  MMETSP0890-20130614|37268_1  5 PLEVIRSVTSYLSPIERLVVRRVCEIFRQAA 35
                 899*************************998 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.021
                  HHHHHHH......TTS-HH..HHHHH-- CS
    PF12937.2   7 EiLlqIF......syLpps..dLlrlal 26 
                  Ei+++IF      s L+++  ++++++l
  MMETSP0890-20130614|37268_1 121 EIISKIFqgctshSILSDRtvEIVNCSL 148
                  9******777766568555588999986 PP

>> PF01337.13  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.7e-05     0.077      25      53 ..     339     366 ..     330     375 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.7e-05
   PF01337.13  25 pdyfGkNlDAlwDcLtdlklkaeeplelv 53 
                     + k+lDAl+DcL d+   ++ p++l+
  MMETSP0890-20130614|37268_1 339 EYSYLKDLDALVDCLIDP-HFPSIPIHLE 366
                  557889***********9.5555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.81
# Mc/sec: 1319.48
//
Query:       MMETSP0890-20130614|37270_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-14   54.0   0.1    1.7e-14   53.7   0.1    1.2  1  PF05768.9  Glutaredoxin-like domain (DUF836)
    8.3e-05   22.3   0.1    0.00012   21.8   0.0    1.3  1  PF00462.19 Glutaredoxin
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.021   14.5   0.0    1.3  1  PF06764.6  Protein of unknown function (DUF1223)


Domain annotation for each model (and alignments):
>> PF05768.9  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   3.7e-18   1.7e-14       2      58 ..      26      84 ..      25     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 3.7e-18
                 EEEEE-SSSCHHHHHHHHCCC..CT--SEEEEEETTTSCC..HHHHSSSS-SEEEE--. CS
    PF05768.9  2 ltLyskpgChLCeqakelLkelkleeglelevidIdedev..learYgveipvlalvgv 58
                 +tLy+k+gC LC+ ak++L++l+ e   +l+ idI++d++   +++Y+++ipvl++++v
  MMETSP0890-20130614|37270_1 26 VTLYTKEGCTLCDVAKDVLSDLRNEVPHTLDLIDIEDDDQqeAFEAYKYDIPVLKIENV 84
                 79*******************9999999********7777789*************995 PP

>> PF00462.19  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.6e-08   0.00012       1      58 [.      26      84 ..      26      86 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2.6e-08
                 EEEEE-STSHHHHHHHHHHHHTT..HH..EEEEETTTCHHHHHHHHHHHSSBSSSEEEETTE CS
   PF00462.19  1 vvvftkptCpyCkkakrlLdelg..vk..yeeidvdedpeireelkelsgwrtvPqvfidge 58
                 v+++tk +C  C  ak++L +l+  v+   + id+++d + +e+ +++ +   +P++ i + 
  MMETSP0890-20130614|37270_1 26 VTLYTKEGCTLCDVAKDVLSDLRneVPhtLDLIDIEDD-DQQEAFEAY-K-YDIPVLKIENV 84
                 89*****************9888666677799999998.666666666.3.56777766665 PP

>> PF06764.6  Protein of unknown function (DUF1223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.5e-06     0.021       1      26 [.      25      50 ..      25      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.5e-06
    PF06764.6  1 vvELfTSqGCssCPpAdallselaee 26
                 +v L+T +GC  C  A ++ls+l +e
  MMETSP0890-20130614|37270_1 25 IVTLYTKEGCTLCDVAKDVLSDLRNE 50
                 699********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       268  (0.0196021); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 661.39
//
Query:       MMETSP0890-20130614|37272_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   12.7   0.1        0.1   11.9   0.1    1.4  1  PF01815.11 Rop protein


Domain annotation for each model (and alignments):
>> PF01815.11  Rop protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   7.4e-06       0.1      33      56 ..      94     117 ..      83     118 .] 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.4e-06
   PF01815.11  33 eeadlCEkLHeqAeeLyrklsarl 56 
                  ++a++  +LHe A+ L+++l+ r+
  MMETSP0890-20130614|37272_1  94 DQAAILASLHEAADLLHATLRRRV 117
                  6889999**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       543  (0.0397162); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 398.27
//
Query:       MMETSP0890-20130614|37285_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       111  (0.00811878); expected 273.4 (0.02)
Passed bias filter:                      104  (0.00760679); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.38s 00:00:00.64 Elapsed: 00:00:00.62
# Mc/sec: 154.60
//
Query:       MMETSP0890-20130614|37291_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   70.3   0.0    4.5e-13   49.2   0.0    2.2  2  PF12796.2  Ankyrin repeats (3 copies)
    2.9e-15   55.0   0.1    1.5e-08   33.9   0.0    3.2  3  PF00023.25 Ankyrin repeat
    7.2e-13   47.3   0.0    3.7e-07   29.6   0.0    3.6  4  PF13606.1  Ankyrin repeat
    3.4e-12   46.4   0.1    3.3e-09   36.9   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    7.4e-09   35.4   0.1     0.0014   18.7   0.0    2.9  3  PF13857.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.09   12.8   0.1       0.23   11.5   0.0    1.6  2  PF05130.7  FlgN protein


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.4e-09   7.7e-06      28      54 ..      57      87 ..      28      94 .. 0.62
   2 !   49.2   0.0     2e-16   4.5e-13       1      83 [.      63     151 ..      63     156 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.4e-09
    PF12796.2 28 t....pLhlAaeagnleivklLleagadvna 54
                 +    pL  Aa++g++e++++L+++gadvn+
  MMETSP0890-20130614|37291_1 57 QgwvtPLWMAASNGHTEVLRFLISKGADVND 87
                 2555577777777777777777777777776 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 2e-16
    PF12796.2   1 LhlAaengnlelvklLlekgadvdl.......getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekga 83 
                  L +Aa+ng+ e++++L++kgadv+         ++++ +Aae g+ eiv++L++aga +    + gnt+ + A+ +++ +++++  ++g+
  MMETSP0890-20130614|37291_1  63 LWMAASNGHTEVLRFLISKGADVNDvynidclVQRAIDIAAEGGHAEIVQVLVDAGAKPGYVLDMGNTAEI-AAYHNKPDVLRVCTSAGI 151
                  678*********************77655555555**************************99*****976.556788888888777765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   6.5e-12   1.5e-08       4      30 ..      61      87 ..      60      90 .. 0.95
   2 !   16.3   0.0   2.4e-06    0.0055       7      28 ..     100     121 ..      98     124 .. 0.90
   3 ?    0.7   0.0      0.22   4.9e+02       8      25 ..     133     150 ..     133     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 6.5e-12
                 BHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25  4 TPLHlAalrgnlevvklLlsqGAdlna 30
                 TPL +Aa++g++ev+++L+s+GAd+n 
  MMETSP0890-20130614|37291_1 61 TPLWMAASNGHTEVLRFLISKGADVND 87
                 9************************96 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.4e-06
                  HHHHHTTHHHHHHHHHHTTSST CS
   PF00023.25   7 HlAalrgnlevvklLlsqGAdl 28 
                   +Aa+ g++e+v+ L+++GA +
  MMETSP0890-20130614|37291_1 100 DIAAEGGHAEIVQVLVDAGAKP 121
                  58******************87 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.22
                  HHHHTTHHHHHHHHHHTT CS
   PF00023.25   8 lAalrgnlevvklLlsqG 25 
                  +Aa+++ ++v++   s+G
  MMETSP0890-20130614|37291_1 133 IAAYHNKPDVLRVCTSAG 150
                  79********99876666 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         6   1.4e+04      17      27 ..      27      37 ..      24      38 .. 0.73
   2 !   29.6   0.0   1.6e-10   3.7e-07       4      29 ..      61      86 ..      57      87 .. 0.94
   3 !   10.4   0.0   0.00026       0.6       5      27 ..      98     120 ..      96     122 .. 0.90
   4 ?    2.8   0.0     0.072   1.6e+02       8      25 ..     133     150 ..     132     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6
    PF13606.1 17 lveaLlengad 27
                  vea ++n +d
  MMETSP0890-20130614|37291_1 27 EVEAIVKNDPD 37
                 57888888776 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.6e-10
    PF13606.1  4 TpLhlAasngrielveaLlengadin 29
                 TpL +Aasng++e++++L+++gad+n
  MMETSP0890-20130614|37291_1 61 TPLWMAASNGHTEVLRFLISKGADVN 86
                 9************************9 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00026
    PF13606.1   5 pLhlAasngrielveaLlengad 27 
                  ++++Aa+ g+ e+v+ L+++ga 
  MMETSP0890-20130614|37291_1  98 AIDIAAEGGHAEIVQVLVDAGAK 120
                  7899****************985 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.072
    PF13606.1   8 lAasngrielveaLleng 25 
                  +Aa+++++++++ + ++g
  MMETSP0890-20130614|37291_1 133 IAAYHNKPDVLRVCTSAG 150
                  69********99876666 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.4e-12   3.3e-09       2      54 .]      60     115 ..      59     115 .. 0.95
   2 !   14.4   0.0   1.6e-05     0.036       4      51 ..      98     144 ..      96     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.4e-12
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGn..taLhiAalrgnieilklLl 54 
                  +t+L +aa+ g++e++++L++kg+d+n + ++++    a++iAa++g+ ei++ L+
  MMETSP0890-20130614|37291_1  60 VTPLWMAASNGHTEVLRFLISKGADVNDVyNIDCLvqRAIDIAAEGGHAEIVQVLV 115
                  699******************************88778***************995 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.6e-05
    PF13637.1   4 aLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilk 51 
                  a++ aa  g+ e+v+ L++ g+ + ++ + Gnta + A +++ +++l+
  MMETSP0890-20130614|37291_1  98 AIDIAAEGGHAEIVQVLVDAGAKPGYVLDMGNTAEIAA-YHNKPDVLR 144
                  7999***********************999****9887.777777775 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     6e-07    0.0014      13      43 ..      56      86 ..      49      88 .. 0.89
   2 !   13.5   0.0   2.5e-05     0.058      18      43 ..      97     122 ..      87     135 .. 0.78
   3 ?   -1.0   0.0      0.92   2.1e+03      21      33 ..     132     144 ..     124     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6e-07
    PF13857.1 13 deggntpLhlAakggalevvrlLlapgadln 43
                 d+g++tpL +Aa++g++ev+r+L+ +gad n
  MMETSP0890-20130614|37291_1 56 DQGWVTPLWMAASNGHTEVLRFLISKGADVN 86
                 88999*******************8888876 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.5e-05
    PF13857.1  18 tpLhlAakggalevvrlLlapgadln 43 
                   ++ +Aa+gg++e+v+ L+++ga ++
  MMETSP0890-20130614|37291_1  97 RAIDIAAEGGHAEIVQVLVDAGAKPG 122
                  57889**************8877655 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.92
    PF13857.1  21 hlAakggalevvr 33 
                   +Aa+++ ++v+r
  MMETSP0890-20130614|37291_1 132 EIAAYHNKPDVLR 144
                  5899999999998 PP

>> PF05130.7  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   3.7e+03      11      39 ..      11      39 ..       7      41 .. 0.68
   2 ?   11.5   0.0    0.0001      0.23      35      98 ..     155     213 ..     146     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.6
    PF05130.7 11 eeelelleeLlelleeEqeaLkagdieaL 39
                 +++ +l+ e + ++  E ea++++d +a+
  MMETSP0890-20130614|37291_1 11 KKLYNLCAEEKPIALSEVEAIVKNDPDAV 39
                 55556666666677778888888887776 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.0001
    PF05130.7  35 dieaLeelteeKeellaeleeleeerqklleelgleaeeatlsellaedeelaelwqelkelle 98 
                  d+++Le+++++K+   +  ++l ++r+k  +++ +     tl+ +l++++el+++ qe +++++
  MMETSP0890-20130614|37291_1 155 DTAGLESILKQKHNFENLEDNLKRRRSKKAKKAPF-----TLEGWLSDKPELRAAIQENQTKCK 213
                  899*********77655555555666666655555.....6***************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 690.15
//
Query:       MMETSP0890-20130614|37288_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-53  182.2   5.0    1.5e-53  181.6   3.5    1.2  1  PF01545.16 Cation efflux family
  ------ inclusion threshold ------
       0.25   10.1  31.0         23    3.7  21.4    2.5  1  PF02535.17 ZIP Zinc transporter
       0.27    9.3  10.8       0.47    8.5   7.5    1.3  1  PF09726.4  Transmembrane protein


Domain annotation for each model (and alignments):
>> PF01545.16  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   3.5   3.2e-57   1.5e-53      12     279 ..       1     407 [.       1     412 [. 0.85

  Alignments for each domain:
  == domain 1    score: 181.6 bits;  conditional E-value: 3.2e-57
   PF01545.16  12 alvelivglltnSlallaDafhslsdaislvlalvavrlaskppdkkfpFGlgrlevlgalvnsvlllflavfillesierliep....heidapei.algvalisllvnlllalllrr............................................................................................agrk................................................sskrssalravalhvlgdalgslgvlvaallilftglnlylDpilsllialiilytglpllkeslsiLlgavpdpedldelesalreldgvlsvhdlhvwkvgsskilveihievdpslsvseahevaeeiekalkerfpgiadvtiqle 279
                  +l e i+g++++Sla+l Da h+++da+s   +l+av+la+k+ + + +FG+gr+evl+al ++++++++ + ++ e++ r        +e   ++i +++ ++i++++n++l  +l +                                                                                            +  +                                                  + + +l a++lhvlgd+++s+gv+va ++i++ +   ++Dpi++ll+a+++l+t++ ++k  +++Ll+++p ++++++l +   +++ v++vhdlhvw +++++ ++++hi + p++ ++ ++e+ +++ k+  +   gi+  tiq++
  MMETSP0890-20130614|37288_1   1 MLLEGIGGFIAGSLAMLGDAAHMMTDAASFATSLIAVYLAEKGVTSTMTFGHGRIEVLAALSSTLAIWLVTGLLVGEAVRRMRAFfrgeAEPVDGRImTIL-GTIGVCMNIILERVLGGhdhlpgsghshahghchahspvhspvknkshelvpprnsgntktdhahehahgrvqiedglhsndnahehshahasshshtndhshdhsehsH--EhhseadhdhhsershlavgsteaarhgkysavstneheehgpgssswlMTGVNLNLDAAYLHVLGDLVQSIGVVVAGIIIWIHPDMQIADPICTLLFAIVVLITTFSMIKRIVLVLLQGAPANINVEDLGESMSNIECVCDVHDLHVWELSPGRAILTVHIGIFPDA-IRNSDEILDQAHKIAEAA--GIQYSTIQVQ 407
                  7899****************************************************************************988879988555555551444.*****************889999998888888888888888888888888888888888888777777777777777777777776666666666666555555555540..044555555555666666666666667777777777888899999999966679*****************************877779*********************************************99***************************77776.899999999999999777..9999999965 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  21.4    0.0051        23      85     169 ..      30     225 ..      10     313 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0051
   PF02535.17  85 vllGffllllleelltmikes..........................................................................dahshgegrghdkehsettsdeaskskes.......................................kvenaeseeeeteeeesdhdheskeksesdkesel 169
                  ++ +++ ++l+e+ +t  ++                                                                           +  +h++++gh + hs   s+ ++ks e                                        ++++++s+++ +++ +s+h+he++++ ++d++se 
  MMETSP0890-20130614|37288_1  30 FATSLIAVYLAEKGVTSTMTFghgrievlaalsstlaiwlvtgllvgeavrrmraffrgeaepvdgrimtilgtigvcmniilervlgghdhlpgS--GHSHAHGHCHAHSPVHSPVKNKSHELvpprnsgntktdhahehahgrvqiedglhsndnahehshAHASSHSHTNDHSHDHSEHSHEHHSEADHDHHSER 225
                  556666667777666666666667777777777777777777777777777777777777777777777777777777777777777777766442..3333333333333333333333333366777788888888888888888888888887776644445555555555555555555554444444444443 PP

>> PF09726.4  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.5    0.0001      0.47     253     389 ..     154     441 ..     120     444 .] 0.61

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0001
    PF09726.4 253 rkekgkdkaknssdkkkekkelqqknhhasksksvqsyssklqeievkenvsnkskksseslagsaeelalkkdsnsssaeeksakskssksaktskrsksnsspkshksa........................................................................................................................................................agsvssssvkkneskdkkasksssga 389
                   +++g++k+   +++ + + +++   h ++   + +s++  +++ +++++  ++s++s e  +   ++ +  +++ +++++e + ++k s  + + ++++++ s++ + +                                                                                                                                                         a+s  sss+ kn s d  +++++++a
  MMETSP0890-20130614|37288_1 154 PRNSGNTKTDHAHEHAHGRVQIEDGLH-SNDNAHEHSHAHASSHSHTNDHSHDHSEHSHEHHSEADHDHHSERSHLAVGSTEAARHGKYSAVSTNEHEEHGPGSSSWLMTGvnlnldaaylhvlgdlvqsigvvvagiiiwihpdmqiadpictllfaivvlittfsmikrivlvllqgapaninvedlgesmsniecvcdvhdlhvwelspgrailtvhigifpdairnsdeildqahkiaeaagiqystiqvqkmydgkcaASSCFSSSSPKNASTDASSTTKHKHA 441
                  222222222222222222222222111.111122222333444444444444444444443333334444444444555555555555555554455555555555544445677777777777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888877778888888877777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       897  (0.0656085); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.90
# Mc/sec: 1182.20
//
Query:       MMETSP0890-20130614|37289_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.2e-136  453.8   0.0   3.7e-136  453.6   0.0    1.0  1  PF00266.14 Aminotransferase class-V
    1.4e-09   37.3   0.0    2.1e-09   36.7   0.0    1.3  1  PF00155.16 Aminotransferase class I and II
    6.4e-05   22.0   0.2    0.00015   20.8   0.1    1.6  2  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00015   20.0   0.8        0.1   10.7   0.0    2.1  2  PF01053.15 Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.6   0.0  1.1e-139  3.7e-136       1     371 []      70     444 ..      70     444 .. 0.98

  Alignments for each domain:
  == domain 1    score: 453.6 bits;  conditional E-value: 1.1e-139
                  -B--TTTS----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT-S-GGGEE---------HHHHHH---------EEEEETT--GGGTHHHHHHHHH---EEEEE-B----.-B-GGGHHHH--TTEEEEEEESB-S----B--HHHHHHHHHH..-.--EEEEE---STTTS---HHHHT-SEEE--------------EEE-HHHHHH----------EEE--S---EE--TTGGG---------------HHHHHHH---HHHHHHHHHHHHHHHHHHTTSTT-EEE--...TT----EEEE-----TTT---HHHH---B-B---TT-HHHHHHTT-S.--EEE---TT--HHHHHHH CS
   PF00266.14   1 iyLdsaAttqkpqeVldalqeyytdyngnvhrsvhtlgkeatealeearekvaelinaeseeeiiFtsgttealnlvalslarslkagdeilvteaehhanlvpwqelakrtgakvkvipvdeeg.sldldeleklltpktklvaithvsnvtGvvqpveeiaklake..a.galvvvDaaqavghipidvkklgvDflafSgHKllgPtGiGvlyvrrellekleplklggemveevsleettfaeapskfeaGTpniagiiglgaaleyleeigleaiekhekelaeylyerLsalpgvellgpakaerrasivsfafkgveaedvatlLdergIavrsGhhcaqplmkrlale.gtlRaSlyiynteeevdrl 371
                  +yLds At+qkp++Vld  + yy+  n+nvhr+ htl+++atea+e+ar kva++i+a++++ei+Ft+g+tea+nlva s++++l++gdei++++ ehhanlvpwq la r+++++k+i++++++ ++dl ++ek++++ktk++ai hvsnv+G+  p++++ k++k+  + ++ +++Da+q+v+h+p++v++l++Dfl++S+HK++gP G+G+l+++ + l+++ p+++ggem+++vsle++tfa +p +feaGTp++a++i+lgaa+++l++ig++ i+++e+ la++l ++Ls+  g++++gp   +r+ ++v+f+++g++a+d+  +Ld++g+a r+Ghhc+qpl+  l+ + g +R+Sl++ynt ee+d +
  MMETSP0890-20130614|37289_1  70 VYLDSGATSQKPRRVLDVERAYYEYDNANVHRGAHTLATRATEAYENARIKVANFIHAKEASEIVFTRGATEAINLVAASFGDQLEKGDEIVISVIEHHANLVPWQLLASRKNLNLKFIRLNADKsNIDLLDAEKQISEKTKMLAIFHVSNVLGCRVPLDDLQKILKAkaHpDCAILLDACQSVPHMPVNVQDLNIDFLVASAHKMCGPMGVGFLWGKAHRLHSMAPWQGGGEMIDQVSLEKSTFALPPARFEAGTPPVAQAIALGAAIDFLNDIGMKTIHEYEQHLARKLVQGLSSRSGITIYGP-LLQREVALVAFNVQGIHASDLSFFLDQEGVATRAGHHCTQPLHHALDADsGSCRVSLALYNTPEEIDLF 444
                  7************************************************************************************************************************98762699**********************************998875458*************************************************************************************************************************************7.78**********************************************999***************976 PP

>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     6e-13   2.1e-09      47     362 ..     115     447 ..      71     448 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 6e-13
                  CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHH..HSS--EEEEECS--TCHHHHHHH....---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-.............HHHHHHHHHCCTTTS.........-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC.-TCHHHH-.---EE-----HH........HHHCCH---BE--.................---EE-.----TTTHHHHHHH CS
   PF00155.16  47 peleealakflgrseklklkreaavvvgsGagaliealifllk..lnpgdeilvpdptyasyknilrl....sggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna.............avvsqlrklsrpfls.........ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.glkvlasq.sgmflltdlsae..takelskkLleevgvyvtpgtsftv.........pgrlRitv.Aglteeeleelvea 362
                    ++ ++a f++       k  +++v++ Ga+++i+++++ +   l++gdei+++   +      ++l      + +  ++l+ +++ ++dl + e++++e      ktk++++  ++N  G   +l++l+k+l+ +    + +++D   ++  +         +nv++   +++v s  K  G +G  vG++ g+a             ++++q+   +++f           + ++qa+++ a+ d+l  +  +++  +  q+++++l+++L +  g++++++     + l+ ++ +   a++ls  L +e gv+ ++g ++t          +g+ R+++    t+ee++ ++e+
  MMETSP0890-20130614|37289_1 115 ENARIKVANFIH------AKEASEIVFTRGATEAINLVAASFGdqLEKGDEIVISVIEHHANLVPWQLlasrKNLNLKFIRLN-ADKSNIDLLDAEKQISE------KTKMLAIFHVSNVLGCRVPLDDLQKILKAKAHPDCAILLDACQSVPHM--------PVNVQDLNIDFLVASAHKMCGPMG--VGFLWGKAhrlhsmapwqgggEMIDQVSLEKSTFALpparfeagtPPVAQAIALGAAIDFLNDI-GMKTIHEYEQHLARKLVQGLSSRsGITIYGPLlQREVALVAFNVQgiHASDLSFFLDQE-GVATRAGHHCTQplhhaldadSGSCRVSLaLYNTPEEIDLFLEK 447
                  445556777777......666669**********998887776569*********9988655444443111144456666655.6788*************......**************************9999988*******87666655........5899996559**************..******999************************9999999877777777777777777777543.999999999999999*****988977777765444444555554444566666666666.99999999998899999999999999999334577888877776 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   4.4e-08   0.00015      24     151 ..     108     253 ..      86     259 .. 0.73
   2 ?   -2.8   0.0      0.62   2.1e+03     285     316 ..     385     419 ..     367     434 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.4e-08
   PF01041.12  24 gkeveeFEka...faeylgvkha...vavssGtaAlllaLralgig..pGdeVIvpsltfvAtana....vlqlGakpvfvDvdpetlnldpaaieaaitprtk..aIlpV.hlyGqpa...dmdairaiaaehglkvieDaAqAl 151
                   + +e++E+a   +a+++++k a   v +  +t+A+ l+ + +g +  +Gde+++  +  +A + +    +++ +++  f+  ++++ n+d  ++e+ i+++tk  aI+ V +++G  +   d+++i +  a  + +++ Da+q++
  MMETSP0890-20130614|37289_1 108 TRATEAYENArikVANFIHAKEAseiVFTRGATEAINLVAASFGDQleKGDEIVISVIEHHANLVPwqllASRKNLNLKFIRLNADKSNIDLLDAEKQISEKTKmlAIFHVsNVLGCRVpldDLQKILKAKAHPDCAILLDACQSV 253
                  566666666333367777766554436777889999888888554455**************9987222255678999*************************84466666457887772345566666666779*********97 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.62
   PF01041.12 285 keeaa.vsrdelvealkeegigtrvhy..tnplha 316
                  + +++ ++ ++l  +l++eg++tr+    t+plh 
  MMETSP0890-20130614|37289_1 385 AFNVQgIHASDLSFFLDQEGVATRAGHhcTQPLHH 419
                  44555577888999999999999986656778874 PP

>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00024      0.81     244     279 ..      97     133 ..      89     144 .. 0.84
   2 !   10.7   0.0   3.1e-05       0.1     129     202 ..     198     274 ..     146     280 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00024
                  HHHH---TTHHHHHHHHHHHH.HHHHHHHHTSTTEEE CS
   PF01053.15 244 wlllrGlkTLslRverhsenA.lklAefLekhpkvek 279
                    ++rG +TL+ R  ++ enA +k+A+f++++++ e 
  MMETSP0890-20130614|37289_1  97 ANVHRGAHTLATRATEAYENArIKVANFIHAKEASEI 133
                  5689*****************559*****99876554 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 3.1e-05
                  CHHHHHHHTTTTEEEEEEESSBTTT...TB---HHHHHHHHHHCSS-EEEEE-TTTHH.HH--GGG----EEE--TTT CS
   PF01053.15 129 dleelekaikpntklvylEtptnpl...lkvvDieaiaklakkkgdvlvvvDntfasp.llqrpLelgaDivvhSaTK 202
                  dl + ek+i+++tk++ +  ++n l   + + D+++i+k ak++ d+++++D++ + p + ++  +l++D  v Sa K
  MMETSP0890-20130614|37289_1 198 DLLDAEKQISEKTKMLAIFHVSNVLgcrVPLDDLQKILK-AKAHPDCAILLDACQSVPhMPVNVQDLNIDFLVASAHK 274
                  4456799**********999**98732244558888887.455669************88899999*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.43s 00:00:01.24 Elapsed: 00:00:00.77
# Mc/sec: 1465.82
//
Query:       MMETSP0890-20130614|37301_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       179  (0.0130925); expected 273.4 (0.02)
Passed bias filter:                      173  (0.0126536); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 455.70
//
Query:       MMETSP0890-20130614|37305_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-16   57.9   0.1    8.6e-16   57.1   0.0    1.4  1  PF01465.15 GRIP domain


Domain annotation for each model (and alignments):
>> PF01465.15  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   6.3e-20   8.6e-16       2      45 ..     204     248 ..     203     249 .. 0.94

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 6.3e-20
   PF01465.15   2 ganleYLKNVllqFLeqke.sngreqllpVistlLkFseeekqki 45 
                  + ++eYLKNV+lq+L     s++r++l+pV++t+L+Fs+++++ +
  MMETSP0890-20130614|37305_1 204 NLDMEYLKNVILQYLSLPTgSSERSSLVPVLATVLHFSDADLRTL 248
                  789**************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       875  (0.0639994); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.76
# Mc/sec: 1040.52
//
Query:       MMETSP0890-20130614|37314_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35   10.7   2.5       0.44   10.4   0.0    2.2  3  PF14300.1 Domain of unknown function (DUF4375)


Domain annotation for each model (and alignments):
>> PF14300.1  Domain of unknown function (DUF4375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.2e-05      0.44      74     109 ..      15      52 ..       3      66 .. 0.79
   2 ?   -0.3   0.1     0.063   8.6e+02      95     120 ..      69      94 ..      52      96 .. 0.65
   3 ?   -2.4   0.0      0.28   3.9e+03      44      63 ..     129     148 ..     126     154 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.2e-05
    PF14300.1  74 alereer..qeelealeeefeeldelDdefyeleeelt 109
                   ++r+ +  qee++++++ ++ +d+lD +f+ ++ + +
  MMETSP0890-20130614|37314_1  15 GITRQDSqwQEEISSFRNSTDSFDSLDGFFIANDSNAA 52 
                  4455444469********************99877655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.063
    PF14300.1  95 delDdefyeleeelteliakYirehp 120
                  de +d+  +++e +t+ +a Yi + +
  MMETSP0890-20130614|37314_1  69 DEEEDDDNNYNETETSPFAPYILADI 94 
                  34445555777888888888887765 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.28
    PF14300.1  44 ellealrligakklakllek 63 
                   +++++++++a++  ++l  
  MMETSP0890-20130614|37314_1 129 TTMKMYKRFRAQAQKQILFG 148
                  56777888888877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.75
# Mc/sec: 501.64
//
Query:       MMETSP0890-20130614|37324_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       635  (0.0464453); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 556.19
//
Query:       MMETSP0890-20130614|37331_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-31  105.3   9.6    5.4e-10   38.4   0.9    4.3  4  PF00023.25 Ankyrin repeat
    3.1e-29  101.0   1.4    1.4e-17   63.7   0.4    2.1  2  PF12796.2  Ankyrin repeats (3 copies)
    5.2e-26   88.0   5.0    2.1e-08   33.4   0.2    4.5  4  PF13606.1  Ankyrin repeat
    1.4e-20   72.6   7.9    6.3e-09   35.6   0.1    4.1  4  PF13857.1  Ankyrin repeats (many copies)
      2e-18   66.2   1.1    2.5e-09   37.3   0.1    3.0  3  PF13637.1  Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.044   12.8   0.0       0.06   12.3   0.0    1.1  1  PF12227.3  Protein of unknown function (DUF3603)


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.001       2.4       5      25 ..      42      66 ..      41      69 .. 0.82
   2 !   38.4   0.9   2.4e-13   5.4e-10       1      30 [.      76     105 ..      76     106 .. 0.97
   3 !   32.2   0.0   2.1e-11   4.9e-08       1      31 [.     109     139 ..     109     141 .. 0.94
   4 !   29.6   0.1   1.5e-10   3.3e-07       3      32 ..     145     174 ..     143     175 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
                 HHHHHHHTTHHHHHHHHHH....TT CS
   PF00023.25  5 PLHlAalrgnlevvklLls....qG 25
                 PLH Aa++g +  ++ Ll     +G
  MMETSP0890-20130614|37331_1 42 PLHSAARSGEVGHITELLTeasaRG 66
                 9********9999999998655555 PP

  == domain 2    score: 38.4 bits;  conditional E-value: 2.4e-13
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlna 30 
                  +G+TPLHlAa++g+ +v+  Ll++GA+++a
  MMETSP0890-20130614|37331_1  76 HGRTPLHLAAYSGHSNVLCALLENGANVHA 105
                  7***************************98 PP

  == domain 3    score: 32.2 bits;  conditional E-value: 2.1e-11
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  d +T+LH A+++g+le+v+ Ll++GAd +a+
  MMETSP0890-20130614|37331_1 109 DNMTALHFASQSGSLECVRKLLEAGADKDAV 139
                  689************************9997 PP

  == domain 4    score: 29.6 bits;  conditional E-value: 1.5e-10
                  CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +TPLH+A lr + +++  L+++GA+++a d
  MMETSP0890-20130614|37331_1 145 RTPLHIALLRSRCDIIDTLIEAGANIDAAD 174
                  8***************************98 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0     1e-14   2.3e-11      28      86 ..      31     104 ..       7     107 .. 0.78
   2 !   63.7   0.4     6e-21   1.4e-17      16      88 ..      96     173 ..      96     174 .. 0.96

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1e-14
    PF12796.2  28 t..........pLhlAaeagnleivklLle....agad.vnakdkegntpLhlAvrnghlelvklLlekgadvn 86 
                  +          pLh Aa++g +  +  Ll     +ga  v+a+d++g+tpLhlA+ +gh  ++  Lle+ga+v+
  MMETSP0890-20130614|37331_1  31 SkrsapkgislPLHSAARSGEVGHITELLTeasaRGAHiVDARDEHGRTPLHLAAYSGHSNVLCALLENGANVH 104
                  14556777778**********97555555558888886359999****************************97 PP

  == domain 2    score: 63.7 bits;  conditional E-value: 6e-21
    PF12796.2  16 Llekgadvdl....getpLhlAaeagnleivklLleagadvnakd.kegntpLhlAvrnghlelvklLlekgadvnlr 88 
                  Lle+ga+v+     + t+Lh A+++g+le+v+ Lleagad +a + ++ +tpLh+A    + ++++ L+e+ga++++ 
  MMETSP0890-20130614|37331_1  96 LLENGANVHAgamdNMTALHFASQSGSLECVRKLLEAGADKDAVMtNNRRTPLHIALLRSRCDIIDTLIEAGANIDAA 173
                  89********9988888**************************99******************************986 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0092        21       5      22 ..      42      59 ..      39      70 .. 0.71
   2 !   33.4   0.2   9.3e-12   2.1e-08       1      30 []      76     105 ..      76     105 .. 0.95
   3 !   21.6   0.0   6.2e-08   0.00014       2      29 ..     110     137 ..     109     138 .. 0.92
   4 !   26.4   0.0   1.7e-09     4e-06       1      30 []     143     172 ..     143     172 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0092
    PF13606.1  5 pLhlAasngrielveaLl 22
                 pLh Aa++g +  + +Ll
  MMETSP0890-20130614|37331_1 42 PLHSAARSGEVGHITELL 59
                 9*******9775554444 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 9.3e-12
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                  +G+TpLhlAa++g+ +++ aLlenga+++a
  MMETSP0890-20130614|37331_1  76 HGRTPLHLAAYSGHSNVLCALLENGANVHA 105
                  69*************************975 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 6.2e-08
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                  + T+Lh A ++g++e v+ Lle+gad +
  MMETSP0890-20130614|37331_1 110 NMTALHFASQSGSLECVRKLLEAGADKD 137
                  68************************76 PP

  == domain 4    score: 26.4 bits;  conditional E-value: 1.7e-09
    PF13606.1   1 nGnTpLhlAasngrielveaLlengadina 30 
                  n++TpLh+A+ + r+++++ L+e+ga+i+a
  MMETSP0890-20130614|37331_1 143 NRRTPLHIALLRSRCDIIDTLIEAGANIDA 172
                  689************************985 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12   2.7e+02      18      36 ..      41      59 ..      37      69 .. 0.78
   2 !   34.1   0.5   8.5e-12   1.9e-08       9      53 ..      70     114 ..      64     114 .. 0.93
   3 !   35.6   0.1   2.8e-12   6.3e-09       1      56 []      96     151 ..      96     151 .. 0.95
   4 !   19.6   0.0     3e-07   0.00069       1      48 [.     129     176 ..     129     181 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.12
    PF13857.1 18 tpLhlAakggalevvrlLl 36
                  pLh Aa+ g +  + +Ll
  MMETSP0890-20130614|37331_1 41 LPLHSAARSGEVGHITELL 59
                 69******99888888888 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 8.5e-12
    PF13857.1   9 vnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltal 53 
                  v+a+de+g+tpLhlAa+ g+++v++ Ll++ga+ ++   d+ tal
  MMETSP0890-20130614|37331_1  70 VDARDEHGRTPLHLAAYSGHSNVLCALLENGANVHAGAMDNMTAL 114
                  5689*******************************9999999997 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 2.8e-12
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldlA 56 
                  Lle+g a+v+a    ++t+Lh+A   g+le+vr+Ll++gad ++  +++ +t+l++A
  MMETSP0890-20130614|37331_1  96 LLENG-ANVHAGAMDNMTALHFASQSGSLECVRKLLEAGADKDAVMTNNrRTPLHIA 151
                  89***.88888888899**************************************99 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 3e-07
    PF13857.1   1 Llehg.padvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsd 48 
                  Lle+g + d+  t++++ tpLh+A  + + ++++ L+++ga++++ ds 
  MMETSP0890-20130614|37331_1 129 LLEAGaDKDAVMTNNRR-TPLHIALLRSRCDIIDTLIEAGANIDAADSK 176
                  89999999999999887.*************************998875 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   2.8e-09   6.4e-06       4      54 .]      42      97 ..      40     102 .. 0.90
   2 !   37.3   0.1   1.1e-12   2.5e-09       1      54 []     110     164 ..     110     164 .. 0.94
   3 ?    2.2   0.0      0.11   2.5e+02      15      37 ..     158     180 ..     154     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.8e-09
    PF13637.1  4 aLhyaaisgrlelvklLl....ekgid.inrtdesGntaLhiAalrgnieilklLl 54
                 +Lh aa+sg +  +  Ll    ++g+  ++++de G+t+Lh+Aa+ g+ ++l  Ll
  MMETSP0890-20130614|37331_1 42 PLHSAARSGEVGHITELLteasARGAHiVDARDEHGRTPLHLAAYSGHSNVLCALL 97
                 7*********99999999876677766899*********************99987 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 1.1e-12
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAalrgnieilklLl 54 
                  ++taLh a +sg le+v+ Lle g+d +++  ++ +t+LhiA+lr + +i+  L+
  MMETSP0890-20130614|37331_1 110 NMTALHFASQSGSLECVRKLLEAGADKDAVmTNNRRTPLHIALLRSRCDIIDTLI 164
                  69*****************************99*************999987775 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.11
    PF13637.1  15 elvklLlekgidinrtdesGnta 37 
                  +++  L+e g++i++ d++  t+
  MMETSP0890-20130614|37331_1 158 DIIDTLIEAGANIDAADSKSITP 180
                  67899**********99988776 PP

>> PF12227.3  Protein of unknown function (DUF3603)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.06      26     109 ..     126     211 ..     112     217 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.6e-05
    PF12227.3  26 pkelledvyqkaylrknheriqleycfvvtdGkgilavdtigykipirksr.liprqeqlvyelveeeeaekyelekeele.keyh 109
                   ++lle   +k  +  n++r+ l+ +++ +  + i ++   g +i    s+ ++pr  qlv ++++ +++e+ +l k++++ k+ h
  MMETSP0890-20130614|37331_1 126 VRKLLEAGADKDAVMTNNRRTPLHIALLRSRCDIIDTLIEAGANIDAADSKsITPRSSQLVLDILARRQSEQEQLRKNSSDnKQNH 211
                  578888889999999999******99999999999999999****999987478*************9999999988776546666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      280  (0.0204798); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 705.95
//
Query:       MMETSP0890-20130614|37329_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 329.50
//
Query:       MMETSP0890-20130614|37334_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       509  (0.0372294); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.41s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1437.81
//
Query:       MMETSP0890-20130614|37339_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      423  (0.0309391); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.77
# Mc/sec: 513.51
//
Query:       MMETSP0890-20130614|37343_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.59
# Mc/sec: 471.15
//
Query:       MMETSP0890-20130614|37349_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-49  167.6   0.0    1.5e-49  167.3   0.0    1.1  1  PF01327.16 Polypeptide deformylase


Domain annotation for each model (and alignments):
>> PF01327.16  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0   1.1e-53   1.5e-49       3     156 ..      45     195 ..      43     196 .. 0.95

  Alignments for each domain:
  == domain 1    score: 167.3 bits;  conditional E-value: 1.1e-53
   PF01327.16   3 kivkvgdpvLrekakpvekidseelkkliedmletmkaaegvgLAApQigvnkrlfvvelpseeeekeeketvliNPeitstseetveaeEgClSvpgilgkveRpkrikvkyldlegkeieleadgllArvlqHEiDhldGilfidrlskskk 156
                  +ivk+++p Lr++ ++++  d +  + l+++ml+ m++a+gvgLAApQ+g+n+rl+v++ + ++e++ + e vl+NP+i+++s+    + EgClS+p++ g+veR+k+ikv++l  +gk+i+ + +g+ Ar++qHE+DhldG+++idrl+++++
  MMETSP0890-20130614|37349_1  45 EIVKYPHPALRAQNEEIS--DPKSAAPLAKRMLQLMYEANGVGLAAPQVGINLRLMVFNPEGKKERWLD-EVVLVNPKIVEKSDGVDRDIEGCLSFPDMNGTVERHKWIKVEALSPKGKTIKKKYTGWTARIFQHEFDHLDGTVYIDRLNQEDR 195
                  8*****************..444579********************************99998877655.59******************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       213  (0.0155793); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.86
# Mc/sec: 607.45
//
Query:       MMETSP0890-20130614|37351_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-22   78.3   0.0    1.3e-21   76.9   0.0    1.6  1  PF07059.7 Protein of unknown function (DUF1336)
  ------ inclusion threshold ------
      0.063   13.9   0.0      0.093   13.4   0.0    1.2  1  PF04320.9 Protein with unknown function (DUF469)


Domain annotation for each model (and alignments):
>> PF07059.7  Protein of unknown function (DUF1336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.9e-25   1.3e-21       1     227 []       3     267 ..       3     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 1.9e-25
    PF07059.7   1 wsepdpstfkvRgktYlkdkkKvpaeapllkligvdlfksskkldeiakqlelevqkaakkkvp....fvlvvnlqvPdyaaavf..fekd.............gegyslvlyfkleepvek.....eas.pafkellerflkgdevedaFr..rerlKiiakivk.g..swivkklv..ynekpvl......vgkrlqtkyv.rgenylEidvdihs..ssvarkilelvlgylkklvlDlalliegqteeELPErvLgavrlnkid 227
                  w  ++ s+f++Rg +Ylkd+kK+p+++ l++++g+dl+   + + ++ ++l l+   +++ ++p     + v n+  P+ ++ +   + +              ++gy ++ y++ + +  +     eas p + +l +r+ ++ e   + +  +  +K +a++ +       + +lv  yn kpvl      vg+r  +  + r + y+E   ++     +++++ l  +++   klvlDl+ l+eg++ ++LPE +L ++r+nk++
  MMETSP0890-20130614|37351_1   3 WEITQASNFNLRGPNYLKDRKKQPSPEALYEPFGADLLRAAQPFFDLPRYLVLPEILQHERNLPswlpRIIVQNMWFPGTPPPLLggGGSStpqgttgtaslhkEKGYMVACYWRITPDTAQtiakdEASwPPHLRLWKRYAQQAE---TAPvlNGCFKGVASVHNlHdrDLGLPRLVkqYNAKPVLmaasalVGERQGVVKIsRDDDYFEFGFNVETdfAAMSNHALLSMKDTFPKLVLDLGWLVEGRHSQDLPEGLLACLRVNKLN 267
                  889999*********************************************99999999997777666999********9886654433336788899999997889999999988777666455443322456788999999663...33334889999999988635744445555556677765222222677766554426667***9999987678999*****************************************986 PP

>> PF04320.9  Protein with unknown function (DUF469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.093      10      84 ..     206     280 ..     201     283 .] 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
    PF04320.9  10 dEFqelgFevslelkegvdeeeidalvdefidvieangLafgggg.eeeleglvclqkigsvteedreaveawlea 84 
                  d + e+gF+v+ +++  ++++++ ++ d+f +++   g++++g   ++  egl++  ++++++ +    +e+wl+ 
  MMETSP0890-20130614|37351_1 206 DDYFEFGFNVETDFAA-MSNHALLSMKDTFPKLVLDLGWLVEGRHsQDLPEGLLACLRVNKLNLALAPDLEDWLKF 280
                  6799************.999************99999******88577789***999*****99999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.73
# Mc/sec: 929.00
//
Query:       MMETSP0890-20130614|37356_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.40s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 597.49
//
Query:       MMETSP0890-20130614|37362_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   51.1   0.1    1.7e-13   50.5   0.0    1.4  1  PF13621.1  Cupin-like domain
    7.6e-06   25.2   0.1    1.7e-05   24.1   0.0    1.5  1  PF08007.7  Cupin superfamily protein
  ------ inclusion threshold ------
      0.016   15.3   0.0        0.2   11.8   0.0    2.2  2  PF02373.17 JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.7e-17   1.7e-13     132     246 ..     341     442 ..     204     446 .. 0.73

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3.7e-17
    PF13621.1 132 vnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvd.venpdlekfprfkdakalevelepGevLYlPalWfHeVsssseegvhiavnywydp 246
                  + ++lG+   +  +H D yeN++ +++G K++ Lf+p+ + +l++        +++ ++  ++ dl + +rf    a+  +l+pG+++Y+P lW H V++    + +i+ n  ++ 
  MMETSP0890-20130614|37362_1 341 SSIRLGD-TYRYPTHVDCYENILLQLHGAKNVSLFSPDAVRYLQPDL------NHKHWPrANQADLLRAQRF----AVSLTLYPGDAVYIPLLWPHNVQTA---DWSISANRYFRL 442
                  4588888.88899*******************************886......3333330334454555554....788********************88...569999998875 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.7e-09   1.7e-05     128     203 ..     351     434 ..     328     443 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.7e-09
                  --SEE-SSEEEEEEEE--EEEEEE-.....-SSTT-SS-EE--TTT--.....--SEEEEE----EEEE----EEEEE---.-- CS
    PF08007.7 128 vgpHyDdyDVfllQleGrkrWrvyk.....ptvpelelkseeplkildef...epvedfvLepGDlLYlPrgviHqgvaedesl 203
                  ++ H+D y+  llQl+G k   + +      ++p+l++k  +  ++ d     +    + L pGD  Y+P  ++H+ ++ d s+
  MMETSP0890-20130614|37362_1 351 YPTHVDCYENILLQLHGAKNVSLFSpdavrYLQPDLNHKHWPRANQADLLraqRFAVSLTLYPGDAVYIPLLWPHNVQTADWSI 434
                  789********************999988844555554444444444433322667799********************98554 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11     5e+02      22      52 ..      50      81 ..      46     105 .. 0.77
   2 ?   11.8   0.0   4.3e-05       0.2      80     111 ..     406     437 ..     372     440 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.11
                 EEEEEEEE-EEEEEEE-TTCHHHHH.HHHCH- CS
   PF02373.17 22 SinylhfgapkvWyivpsekkekle.kvlskk 52
                 S+n+++++++++W+i p+  ++ +  + + ++
  MMETSP0890-20130614|37362_1 50 SANISNQKSEQQWLIDPTLSETAARcRSCLEH 81
                 8999**********999987776665555554 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.3e-05
                  -EEEEE----EEEE----EEEEEEEEEEEEEE CS
   PF02373.17  80 vyrfvqkpgefVfvfpgayHsvfnlgfniaea 111
                    +++  pg++V+++  ++H v++ +++i+ +
  MMETSP0890-20130614|37362_1 406 AVSLTLYPGDAVYIPLLWPHNVQTADWSISAN 437
                  4568899********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.95
# Mc/sec: 1183.04
//
Query:       MMETSP0890-20130614|37364_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   11.8   1.5        0.1   11.6   1.1    1.1  1  PF08046.6 IlvGEDA operon leader peptide


Domain annotation for each model (and alignments):
>> PF08046.6  IlvGEDA operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   7.5e-06       0.1      10      22 ..      18      30 ..      16      31 .] 0.95

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.5e-06
    PF08046.6 10 LVlISVVVIIIPP 22
                 LVl+SV  I+ PP
  MMETSP0890-20130614|37364_1 18 LVLVSVSMIVLPP 30
                 9***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       137  (0.0100205); expected 273.4 (0.02)
Passed bias filter:                      123  (0.00899649); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.40s 00:00:00.68 Elapsed: 00:00:00.88
# Mc/sec: 84.42
//
Query:       MMETSP0890-20130614|37358_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-09   37.6   0.0    7.7e-08   32.4   0.0    2.7  2  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.013   1.7e+02      50      99 .]     190     229 ..     144     229 .. 0.83
   2 !   32.4   0.0   5.6e-12   7.7e-08      18      99 .]     412     494 ..     377     494 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.013
                  ECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----.CSEEEEEEEEEE- CS
   PF03171.15  50 idvppdpvallvnfgdvllvltngryksvlHrvlpnt.rgeRislafflrp 99 
                   + + +p+  +v+fg+           +++H v  n  + +R+sl f+l p
  MMETSP0890-20130614|37358_1 190 KPLETKPGIAAVFFGS-----------KCRHYVPENDsGCTRVSLDFRLAP 229
                  5556666667777777...........89*******9899*****999876 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 5.6e-12
                  EEEEEEESSSCEEEEEEE.T--EEEEEE-EESCECEC.TSTTEEEEEEEEHHCCCE---GTT-EEEE----..CSEEEEEEEEEE- CS
   PF03171.15  18 glgpHtDnenriltillq.ddggglqfrkedkwidvp.pdpvallvnfgdvllvltngryksvlHrvlpnt..rgeRislafflrp 99 
                   +++H+D+  +++++l   d+ gg+q+   +++i+ p ++p++  + +g+  l+l     ++++Hrv+p++    +R++++ffl+p
  MMETSP0890-20130614|37358_1 412 AVPAHVDP--SLISLLIHnDNSGGFQVVSRGEYIRHPhIGPHSCCLLVGS-ILHLLAPNVPTCKHRVRPREsdLDNRLAITFFLQP 494
                  679*****..*****9999***********988887626888********.568999**************999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.42s 00:00:01.30 Elapsed: 00:00:00.83
# Mc/sec: 1556.19
//
Query:       MMETSP0890-20130614|37363_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-53  179.6   0.4    1.2e-52  178.7   0.3    1.5  1  PF13086.1  AAA domain
    2.6e-49  167.1   0.0    4.7e-49  166.3   0.0    1.4  1  PF13087.1  AAA domain
    3.1e-17   62.6   3.4    2.3e-12   46.8   0.1    2.5  2  PF13604.1  AAA domain
    5.9e-16   57.8   3.7    7.1e-15   54.4   0.2    2.8  2  PF13245.1  Part of AAA domain
    4.9e-10   39.1   2.9    1.2e-07   31.4   0.2    3.1  3  PF05127.9  Helicase
    7.9e-09   35.3   1.8      0.034   13.6   0.0    3.3  3  PF01443.13 Viral (Superfamily 1) RNA helicase
    3.2e-07   29.8   0.3    3.5e-06   26.4   0.2    2.0  2  PF00580.16 UvrD/REP helicase N-terminal domain
      4e-07   29.9   0.0    2.4e-06   27.3   0.0    2.0  1  PF04851.10 Type III restriction enzyme, res subunit
    8.5e-07   29.0   0.2    1.7e-05   24.7   0.0    2.4  2  PF13401.1  AAA domain
    1.2e-06   28.8   4.6      3e-05   24.3   1.9    2.9  2  PF13191.1  AAA ATPase domain
    1.5e-06   27.3   0.0    0.00098   18.0   0.0    2.5  2  PF05970.9  PIF1-like helicase
    3.3e-05   23.9   1.1    0.00011   22.2   0.5    2.2  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    3.3e-05   23.2   1.7      0.025   13.8   0.0    3.3  3  PF13481.1  AAA domain
    4.4e-05   22.5   1.5     0.0042   15.9   1.0    2.2  1  PF09848.4  Uncharacterized conserved protein (DUF2075)
    0.00031   20.1   0.5     0.0012   18.1   0.0    2.1  2  PF01580.13 FtsK/SpoIIIE family
    0.00079   19.4   0.0      0.007   16.4   0.0    2.6  1  PF00910.17 RNA helicase
    0.00096   18.5   1.3       0.14   11.4   0.0    2.6  2  PF13361.1  UvrD-like helicase C-terminal domain
     0.0011   18.6   0.5     0.0071   15.9   0.1    2.2  2  PF03266.10 NTPase
     0.0014   17.4   0.0     0.0026   16.6   0.0    1.3  1  PF00437.15 Type II/IV secretion system protein
     0.0014   17.9   2.8      0.006   15.9   1.9    1.9  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0024   17.7   0.9      0.034   14.0   0.0    2.6  2  PF13521.1  AAA domain
     0.0027   17.2   0.0     0.0056   16.2   0.0    1.5  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
     0.0029   16.9   0.6      0.013   14.8   0.4    2.1  1  PF00270.24 DEAD/DEAH box helicase
      0.003   16.8   0.0      0.009   15.3   0.0    1.8  1  PF01695.12 IstB-like ATP binding protein
     0.0041   15.8   0.0     0.0082   14.8   0.0    1.5  1  PF03308.11 ArgK protein
     0.0053   15.7   0.0     0.0099   14.8   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
     0.0058   16.0   0.1      0.018   14.4   0.0    1.8  1  PF13555.1  P-loop containing region of AAA domain
     0.0075   16.9   2.1      0.089   13.4   1.5    2.5  1  PF13207.1  AAA domain
  ------ inclusion threshold ------
       0.01   15.6   0.7      0.031   14.0   0.5    1.9  1  PF13671.1  AAA domain
      0.019   14.0   0.0      0.057   12.5   0.0    1.8  2  PF02562.11 PhoH-like protein
      0.022   13.8   0.1      0.077   12.1   0.0    1.8  2  PF12846.2  AAA-like domain
      0.029   12.8   0.0      0.054   11.9   0.0    1.4  1  PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
       0.03   13.6   0.1      0.079   12.2   0.1    1.7  1  PF00448.17 SRP54-type protein, GTPase domain
      0.037   13.7   0.0        1.7    8.4   0.0    2.5  2  PF13173.1  AAA domain
      0.042   13.4   0.1       0.14   11.7   0.0    1.9  2  PF07728.9  AAA domain (dynein-related subfamily)
      0.074   11.9   0.0       0.13   11.0   0.0    1.5  1  PF10236.4  Mitochondrial ribosomal death-associated protein 3
      0.086   12.3   0.1       0.24   10.9   0.1    1.7  1  PF00535.21 Glycosyl transferase family 2
      0.094   12.9   3.2       0.43   10.7   2.2    1.9  1  PF13476.1  AAA domain
        0.1   11.8   0.0       0.19   10.9   0.0    1.5  1  PF02223.12 Thymidylate kinase
       0.11   12.6   0.3       0.29   11.3   0.2    1.9  1  PF13238.1  AAA domain
       0.12   11.0   0.0       0.21   10.3   0.0    1.3  1  PF00931.17 NB-ARC domain
       0.27   10.6   2.2       0.53    9.7   0.4    2.2  3  PF13479.1  AAA domain


Domain annotation for each model (and alignments):
>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.3   3.8e-55   1.2e-52       1     240 [.     142     368 ..     142     369 .. 0.88

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 3.8e-55
    PF13086.1   1 klnesqleaikealsssg.itliqGpPgtGKtttivelisqllsekseseakkkkrvLvcapsnaavDeilerlle.........ldeegkkynpkivRigneaekihedlksvsleekleqklaeekaallkeiseeleelkeklekekkklkqekeklkkeskklkkeleearekiekeileeaevvcaTlsgsgskllsklkekfdvvIIDEAaqavepstLiPLllgckkvvLvGDpkQLpptvls 240
                  +ln+ q++a++ al+      li+GpPgtGKttt++++i  l         +++ rvL++apsn+avD++l r+++          ++++kk++ +++R+g++a + ++   ++s e++l ++     a  ++ ++ e++            +k++ +++++e + l+ el+ +++k+ k+++ +++v++aT++g+++      ++kfdv++IDEAaqa e+ ++iPLllg k+++L+GD+kQL ptv+s
  MMETSP0890-20130614|37363_1 142 NLNQGQRQAVAMALNDAVpCFLIHGPPGTGKTTTVAAVIASL--------VEQGTRVLATAPSNVAVDNLLDRVATlldessskkKKKNNKKKTKQLLRLGHPA-RLSKIATPYSFESRLAAQD---GADVVHGLRTEMRA----------AAKSRDKSVRREARALRAELRAREKKLAKQVVIDSRVIFATCVGAARLHDDPETNKFDVIVIDEAAQAPEITSWIPLLLG-KRAILAGDHKQLAPTVKS 368
                  69*************999899*********************........79*********************8889889999877888899999*********.6777777777555555555...44445555544444..........44556788899999999****************************8888888888*************************.*****************9 PP

>> PF13087.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.0   1.4e-51   4.7e-49       2     198 ..     375     576 ..     374     577 .. 0.94

  Alignments for each domain:
  == domain 1    score: 166.3 bits;  conditional E-value: 1.4e-51
    PF13087.1   2 erSlferllkkakekvvlLdtqYRmhpeIsefpsklfYegkLkdaesvkkrelealealekplep.lvfidvekseeeeekke.......ksyiNeeEaelvvklvekllkkgeeesekkigvitpYraqvellkkklkekekekeekeievstvDgfQGrEkdviilslVRsnekkkvgflkderrlNVAlTRAkrkliivGnk 198
                  +++lf+rl++k   ++ lL+tqYRmh  Is+++s+  Y+g L  a++++  + ++l  l   ++  + f+d ++s+++ +++e       +s+ N++Eae+vv  v++l+ + +    +++++i+pY+aq++ +++ l+++ +e+++++++v+tvDg+QG E+ +i++sl Rsne++++gfl+derr+NVA TRAkr+l++++++
  MMETSP0890-20130614|37363_1 375 RHTLFDRLVDKC--PTALLTTQYRMHALISDWASHASYRGLLVPASEIAYCTIPNLPVLRVIDTAgAGFCDDSSSQNTFQSSEgavriknSSIANPQEAEIVVYQVRQLIYHHKLP-PTEVCIISPYNAQLAAIRDCLHRRLPEDKAHAVDVKTVDGYQGGERTAIVISLTRSNERREIGFLADERRFNVACTRAKRHLCLICDS 576
                  689*******99..********************************999999996666666666668899988888888888889999999**********************999.9************************************************************************************997 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.1     7e-15   2.3e-12       1      67 [.     142     208 ..     142     239 .. 0.85
   2 !   16.3   0.3   1.5e-05    0.0049      58     140 ..     293     369 ..     249     412 .. 0.67

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 7e-15
    PF13604.1   1 tlsaeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeeelg 67 
                  +l+++Q++av  +l++   + +++Gp+GtGKtt+++a+ + l ++g rv++ Ap++ a+++L ++++
  MMETSP0890-20130614|37363_1 142 NLNQGQRQAVAMALNDAVPCFLIHGPPGTGKTTTVAAVIASLVEQGTRVLATAPSNVAVDNLLDRVA 208
                  59***********************************************************998833 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.5e-05
    PF13604.1  58 aakvLeeelgiearTiasllerldkeeaegrkeldaktllvvDEAgmvdtrqlarlleaaek.agakvvlvGDteQlqaveaGg 140
                    k+L++++ i++r i +     ++ +  +++e+++ +++v+DEA+     q+ ++++ ++   g + +l GD++Ql++  +  
  MMETSP0890-20130614|37363_1 293 REKKLAKQVVIDSRVIFATCVGAARLH--DDPETNKFDVIVIDEAA-----QAPEITSWIPLlLGKRAILAGDHKQLAPTVKSD 369
                  334566677777777766666666644..346689999******97.....67899999999899************9855443 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.2   2.2e-17   7.1e-15       1      63 [.     149     210 ..     149     233 .. 0.89
   2 ?    3.5   0.0      0.16        52      31      63 ..     478     514 ..     471     527 .. 0.74

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 2.2e-17
    PF13245.1   1 eaveaala.gnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserl..l 63 
                  +av++al+   p++++ G+PGtGKTtt+aa+ia l+++    g +vl+ ap++ a+++l +r+  l
  MMETSP0890-20130614|37363_1 149 QAVAMALNdAVPCFLIHGPPGTGKTTTVAAVIASLVEQ----GTRVLATAPSNVAVDNLLDRVatL 210
                  5899999999999***********************99....*****************9988553 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.16
    PF13245.1  31 iaallaarekpgrsvllvaptgraakrlserl....l 63 
                  +++l+++++ p+  v++++p +++++ +++ l     
  MMETSP0890-20130614|37363_1 478 VRQLIYHHKLPPTEVCIISPYNAQLAAIRDCLhrrlP 514
                  5667787666699****************99965442 PP

>> PF05127.9  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   3.6e-10   1.2e-07       2      69 ..     164     230 ..     163     262 .. 0.81
   2 ?    5.9   0.2     0.024       7.8      60     103 ..     294     339 ..     253     342 .. 0.61
   3 ?   -0.4   0.0       2.1     7e+02     100     132 ..     503     535 ..     473     560 .. 0.69

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 3.6e-10
    PF05127.9   2 ltAdRGRGKSaalGlalaalvaegksnilvtapskenvktlfeflekglealglkeeekkekaekaev 69 
                  + + +G+GK+++++ ++a+lv++g  ++l taps+ +v++l++ +++ l++ + k+++k++k++++++
  MMETSP0890-20130614|37363_1 164 IHGPPGTGKTTTVAAVIASLVEQGT-RVLATAPSNVAVDNLLDRVATLLDESSSKKKKKNNKKKTKQL 230
                  78899******************87.************************999888666666654443 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.024
    PF05127.9  60 kkekaekaevrvnkqrieyiapdellklkeqa..dllvvDEAAaip 103
                  +k+ a+++ + ++    + +   +l++  e++  d++v+DEAA  p
  MMETSP0890-20130614|37363_1 294 EKKLAKQVVIDSRVIFATCVGAARLHDDPETNkfDVIVIDEAAQAP 339
                  3333334445555555555666666666554466*********866 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 2.1
    PF05127.9 100 AaiplpllkkllekpkrvvlatTvhGYEGtGrg 132
                  Aai   l ++l e++++ v   Tv GY G  r+
  MMETSP0890-20130614|37363_1 503 AAIRDCLHRRLPEDKAHAVDVKTVDGYQGGERT 535
                  444444455555666666667777777776664 PP

>> PF01443.13  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0041       1.4       2      36 ..     163     196 ..     162     230 .. 0.60
   2 !   11.2   0.0   0.00056      0.18      57     126 ..     323     391 ..     278     409 .. 0.76
   3 !   13.6   0.0   0.00011     0.034     172     225 ..     517     573 ..     490     574 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0041
   PF01443.13   2 vvhGvpGcGKStlirkllrt.ltvnrptaelrtegk 36 
                  ++hG pG GK+t +  ++ + +   + t +l+t+ +
  MMETSP0890-20130614|37363_1 163 LIHGPPGTGKTTTVAAVIASlV--EQGTRVLATAPS 196
                  79**********9999998842..333334444433 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00056
   PF01443.13  57 s..kgkililDEylllhaGyilllaalssaklvilfGDplQipfhsraasfllahlpssl.shrvgrrttyll 126
                  +  k++++++DE+ +++  +i   + l   k +il GD++Q     +++ + l     +l +++v ++ t ll
  MMETSP0890-20130614|37363_1 323 EtnKFDVIVIDEAAQAP--EITSWIPLLLGKRAILAGDHKQLAPTVKSDRAALL--RHTLfDRLVDKCPTALL 391
                  34589************..899989999999**********8877655533333..33333666666666655 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 0.00011
   PF01443.13 172 ealgvrvttvhevqGltfdkVtlvldketdlllis...srenllvAlTRhrkslvil 225
                  +a+ v+v+tv + qG +    ++ l++++++ +i    ++  + vA+TR+++ l ++
  MMETSP0890-20130614|37363_1 517 KAHAVDVKTVDGYQGGERTAIVISLTRSNERREIGflaDERRFNVACTRAKRHLCLI 573
                  568999*******************9999999888999*************999876 PP

>> PF00580.16  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   1.1e-08   3.5e-06       3     127 ..     145     277 ..     143     311 .. 0.70
   2 ?    1.0   0.0      0.56   1.8e+02     254     294 ..     324     361 ..     317     363 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.1e-08
                  HHHHHHHHS.-SS-...EEEE-------HHHHHHHHHHHHHTT---GGGEEEEESSHHHHHHHHHHHHHHHHHHCHCC-S-H......HHHHHHHHTCCSEEEECCCHHHHHHHHCTGGGT..HHTTTCEECHHHHH CS
   PF00580.16   3 peqreaias.lggp...ilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdde......rlrlalqnlseanisTlHsfcqkilkkeanrig..ldpnfrildeedee 127
                  + qr+a+a  l+     +l+   +G+GKT+++a++i+ l++++    +r+l+    n A + l  R++++l ++  ++ +++      +l +  + ++  +i T  sf +++  ++  ++   l+ ++r ++++  +
  MMETSP0890-20130614|37363_1 145 QGQRQAVAMaLNDAvpcFLIHGPPGTGKTTTVAAVIASLVEQG----TRVLATAPSNVAVDNLLDRVATLLDESSSKKKKKNnkkktkQLLRLGHPARLSKIATPYSFESRLAAQDGADVVhgLRTEMRAAAKSRDK 277
                  55666666643333222689999********************....**********************88877665555556655556666666777788888888888888888887766666666666655533 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.56
                  HHHSSEEEESSGGG--HHHHHHHHHHHTTTTTEEEE--GGG CS
   PF00580.16 254 rerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                   +++++i iDE+ +  +i  +++ ll  ++   ++ GD kQ
  MMETSP0890-20130614|37363_1 324 TNKFDVIVIDEAAQAPEI-TSWIPLLLGKR--AILAGDHKQ 361
                  589********9887666.57888888887..799999999 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.5e-09   2.4e-06       3     163 ..     142     343 ..     140     365 .. 0.69

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.5e-09
   PF04851.10   3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar...kflflvprkelleqaleef..........kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesks.....................................eslealldefdviiiDEaHrlsakkk 163
                  +l++ Q++a+   l+        + +li+ + GtGKT + a++ia l +   ++l  +p++  ++ +l++           k  ++++++ +k+ +      +l +  +  s +++   ++ ++++    +++ +a +++++     +                                      + +   ++fdvi+iDEa  + + ++
  MMETSP0890-20130614|37363_1 142 NLNQGQRQAVAMALND-----AVPCFLIHGPPGTGKTTTVAAVIASLVEqgtRVLATAPSNVAVDNLLDRVatlldessskK-KKKNNKKKTKQLLRLGHPARLSKIATPYSFESRLAAQDGADVVHGLRTEMRAAAKSRDKSV---RrearalraelrarekklakqvvidsrvifatcvgaarLHDDPETNKFDVIVIDEAAQAPEITS 343
                  6788888888888853.....3688*********************************************987777655431.2222222222222222222222222223333344455555666666666666655544444...1444699999999999999999999999999999999877777889999******966666665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.3e-08   1.7e-05       6      79 ..     161     230 ..     159     241 .. 0.81
   2 ?    1.4   0.0      0.87   2.8e+02      88      98 ..     321     337 ..     256     354 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.3e-08
    PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg..rltteelleal 79 
                  + +++G++G+GKTt++  +  +l e      + + v+ +ap+     +ll +++  l+++ ++  ++++++ +++l
  MMETSP0890-20130614|37363_1 161 CFLIHGPPGTGKTTTVAAVIASLVE------QGTRVLATAPSNVAVDNLLDRVATLLDESSSKkkKKNNKKKTKQL 230
                  789********************98......88999999999999************9999996633333333333 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.87
    PF13401.1  88 t......rlliiDEaqr 98 
                         ++++iDEa +
  MMETSP0890-20130614|37363_1 321 DpetnkfDVIVIDEAAQ 337
                  144566699*****976 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   1.9   9.3e-08     3e-05      10     104 ..     149     269 ..     145     348 .. 0.51
   2 ?    2.3   0.0      0.53   1.7e+02      65     151 ..     491     589 ..     468     599 .. 0.63

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 9.3e-08
    PF13191.1  10 eaLlaalrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn................................................lpysaiiqalrellrqlltelaaelggwreallaalga.............l 104
                  +a++ al+++ +   ++l++Gp+G+GK++ + +++++++ ++ r++a   + +  +                                                ++++a                                              +
  MMETSP0890-20130614|37363_1 149 QAVAMALNDAVP---CFLIHGPPGTGKTTTVAAVIASLVEQGTRVLATAPSNVAVDnlldrvatlldessskkkkknnkkktkqllrlghparlskiatpysfeSRLAA--------------------------------QdgadvvhglrtemR 269
                  556666676665...9***********************9999999877666666545555444444444444444444433333333333333333333322222222................................133344444333332 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.53
    PF13191.1  65 n....lpysaiiqalrellrqlltelaaelggwreallaalga........lipelegiiglqalvalldaalartrrpklvlvlD.DlqwadresldlL 151
                  +    +py a   a+r+ l + l+e +a + + +++     g+          +   + ig+ a ++  + a +r++r+ l+l++D D  ++ +   +lL
  MMETSP0890-20130614|37363_1 491 EvciiSPYNAQLAAIRDCLHRRLPEDKAHAVDVKTVDGYQGGErtaivislTRSNERREIGFLADERRFNVACTRAKRH-LCLICDsDTVRTSPFIASLL 589
                  0444477888888888888888888888888888888888877555544444444445555555555555555555577.******55444444433444 PP

>> PF05970.9  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     3e-06   0.00098       2      66 ..     143     203 ..     142     233 .. 0.84
   2 !    6.7   0.0    0.0079       2.6     141     192 ..     350     399 ..     313     409 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3e-06
    PF05970.9   2 LneeQkkvfdaiiesvlnekgklfFvtGsgGtgKtylwkallkklrsegkivlavAssGiAalll 66 
                  Ln+ Q++++  +    ln+   +f ++G  GtgKt    a++++l  +g+ vla+A s +A  +l
  MMETSP0890-20130614|37363_1 143 LNQGQRQAVAMA----LNDAVPCFLIHGPPGTGKTTTVAAVIASLVEQGTRVLATAPSNVAVDNL 203
                  667777666555....6778889*************************************98665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0079
    PF05970.9 141 GktvvlgGDfrQilPviekgsraeivaasikeSklWkevkvleLtknmRlls 192
                  Gk  +l+GD +Q+ P + k+ ra+ ++ ++   +l +++ +  Lt  +R+++
  MMETSP0890-20130614|37363_1 350 GKRAILAGDHKQLAPTV-KSDRAALLRHTLF-DRLVDKCPTALLTTQYRMHA 399
                  8999*************.8999999998775.47788888888888888765 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.5   3.4e-07   0.00011       2      52 ..     163     213 ..     162     330 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.4e-07
                  EEE-------HHHHHHHHHHC...THEEEEEECCSSSSST-HHHHHHHHHHHHH CS
   PF00004.24   2 llyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfke 52 
                  l++GppGtGKT+++ av+ +l   g+++l +  s++    v +  ++++ l++e
  MMETSP0890-20130614|37363_1 163 LIHGPPGTGKTTTVAAVIASLveqGTRVLATAPSNVA---VDNLLDRVATLLDE 213
                  89*****************986656777776666666...33333333333333 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.6e-05     0.025      36      65 ..     162     192 ..     147     205 .. 0.85
   2 ?    6.2   0.1     0.016       5.4      88     151 ..     237     306 ..     232     317 .. 0.80
   3 ?   -0.5   0.0       1.8     6e+02     104     142 ..     560     597 ..     533     607 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.6e-05
    PF13481.1  36 tllaGapgtGKStlalqlaaava.tGepflg 65 
                   l+ G+pgtGK+t +++ +a++  +G+ +l 
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAVIASLVeQGTRVLA 192
                  589******************9988888766 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.016
    PF13481.1  88 rrlsailaalddpenlllvslagv.gslrlt...addrrdalltadlerllaaieeleg..pdlvviDtl 151
                   rls+i++ ++++++l + + a+v + lr     a ++rd+ +  + ++l+a+++++e+   + vviD+ 
  MMETSP0890-20130614|37363_1 237 ARLSKIATPYSFESRLAAQDGADVvHGLRTEmraAAKSRDKSVRREARALRAELRAREKklAKQVVIDSR 306
                  59999999998888888888777776665432224467778888999*********99999*******85 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.8
    PF13481.1 104 llvslagv.gslrltaddrrdalltadlerllaaieeleg 142
                    v   ++  +l+l+ d ++  ++ ++++ ll++iee+ +
  MMETSP0890-20130614|37363_1 560 N-VACTRAkRHLCLICD-SDTVRTSPFIASLLDHIEEHGD 597
                  2.234455578888875.46666899**********9655 PP

>> PF09848.4  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.0   1.3e-05    0.0042       3      94 ..     161     337 ..     160     364 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-05
    PF09848.4   3 vilvtGvaGtGKtvvalnllaeledseeertavflsgNhplvkvlrealakkl....ekkkkkeavkkpssfinnls...................................................................................kaekkkpkedvvivDEAhr 94 
                  ++l++G +GtGKt    +++a l   e++ +      ++  v+ l  ++a  l    +kkkkk++ kk +++    +                                                                                    ++ + +k+dv+++DEA  
  MMETSP0890-20130614|37363_1 161 CFLIHGPPGTGKTTTVAAVIASL--VEQGTRVLATAPSNVAVDNLLDRVATLLdessSKKKKKNNKKKTKQLLRLGHparlskiatpysfesrlaaqdgadvvhglrtemraaaksrdksvrrearalraelrarekklakqvvidsrvifatcvgaarlHDDPETNKFDVIVIDEAAQ 337
                  699**************999999..5544444444444444444444444333333366666667777777766666677777777777777777777777777777777777777777777777788888888888888888888888888888999988888999999999999965 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-06    0.0012      37      82 ..     158     199 ..     138     221 .. 0.79
   2 ?   -0.8   0.1       2.5   8.1e+02      99     131 ..     274     306 ..     253     344 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.8e-06
   PF01580.13  37 kaphlLiaGatgsGKStflrtLilslaathtPeevqlyliDpkgge 82 
                   +p  Li+G +g+GK+t++ + i+sl++    +  +++  +p++++
  MMETSP0890-20130614|37363_1 158 AVPCFLIHGPPGTGKTTTVAAVIASLVE----QGTRVLATAPSNVA 199
                  45578**********************9....77777777777664 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.5
   PF01580.13  99 tdpekalraleelvaemeeRyallkqlgvrsie 131
                  +  ++++r  ++l ae++ R+++l +  v +++
  MMETSP0890-20130614|37363_1 274 SRDKSVRREARALRAELRAREKKLAKQVVIDSR 306
                  445667777788888888888777776666665 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-05     0.007       2      78 ..     163     235 ..     162     241 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-05
   PF00910.17   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.npsdlaelirlvs 78 
                  +++Gp+g+GK+t++  ++++l      ++  +v + +p++  +d+  +  +++ d+ +++k+++ n++  ++l+rl  
  MMETSP0890-20130614|37363_1 163 LIHGPPGTGKTTTVAAVIASLV-----EQGTRVLATAPSNVAVDNLLDRVATLLDESSSKKKKKnNKKKTKQLLRLGH 235
                  69**************999988.....556899999************************999978889999999865 PP

>> PF13361.1  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.025       8.1      51      95 ..     467     511 ..     443     529 .. 0.83
   2 !   11.4   0.0   0.00044      0.14     294     317 ..     553     575 ..     513     577 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
                  HHHHHHHHHHHHHHHHHHHC--GGGEEEEESSGHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF13361.1  51 ereeaefianeikkleekknisakdiavLvRsnrqarnleeaLkk 95 
                  + +eae ++ ++++l  +++++  +++++   n+q  +++++L +
  MMETSP0890-20130614|37363_1 467 NPQEAEIVVYQVRQLIYHHKLPPTEVCIISPYNAQLAAIRDCLHR 511
                  3469**************************************976 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00044
                  HHHHHHHHHHHHTTEEEEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
    PF13361.1 294 leeerRlfYVAiTRAkkqLyltaa 317
                  l+ + R f VA+TRAk +L l++ 
  MMETSP0890-20130614|37363_1 553 LA-DERRFNVACTRAKRHLCLICD 575
                  34.455689************985 PP

>> PF03266.10  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.2e-05    0.0071       2      30 ..     162     190 ..     161     234 .. 0.91
   2 ?    0.1   0.0       1.6   5.2e+02      93     103 ..     322     334 ..     269     337 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-05
                  EEEE-------HHHHHHHHHH-...---E CS
   PF03266.10   2 vfiTGepgvGKtTlvkkvlellksegvkv 30 
                  ++i G+pg+GKtT v  v++ l ++g +v
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAVIASLVEQGTRV 190
                  6799*********************9988 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.6
                  H..HHH-EEEE-- CS
   PF03266.10  93 l..eeadviviDE 103
                     ++ dviviDE
  MMETSP0890-20130614|37363_1 322 PetNKFDVIVIDE 334
                  2337788*****9 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.8e-06    0.0026     112     160 ..     146     191 ..     112     198 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.8e-06
   PF00437.15 112 alkkklaevlrqavqargnilvsGgTgsGKttllnallaeinkdderiv 160
                   +++++a +l+ a      +l+ G+ g+GKtt++ a++a + ++  r++
  MMETSP0890-20130614|37363_1 146 GQRQAVAMALNDA---VPCFLIHGPPGTGKTTTVAAVIASLVEQGTRVL 191
                  4567888889999...678*********************999977664 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.9   1.8e-05     0.006       9     105 ..     169     337 ..     164     358 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.8e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx...................................................................xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
   PF01656.18   9 GvGKTtlaanLaralakrglrVlliDlDpqannssllgkv........seilkkgeekasal...................................................................lenfeagllaegeeg.lvesllkkalealikea...yDvviiDtapg 105
                  G+GKTt++a+ ++ l ++g rVl+  +      ++ll  v        s+++kk+++k   +                                                                   ++++ ++++ +  ++ ++ +   +a  + +  +   +Dv++iD a++
  MMETSP0890-20130614|37363_1 169 GTGKTTTVAAVIASLVEQGTRVLATAP-SNVAVDNLLDRVatlldessSKKKKKNNKK---KtkqllrlghparlskiatpysfesrlaaqdgadvvhglrtemraaaksrdksvrrearalraelrarEKKLAKQVVID--SRvIFATCVGAARLHDDP-EtnkFDVIVIDEAAQ 337
                  9**********************9887.555555666666788887763333333333...1345799999999999999999999988888888877777777666666666666666666555555544444444444..224333333333333111.134477777776665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0    0.0001     0.034       2      34 ..     162     198 ..     161     224 .. 0.75
   2 ?    1.3   0.0      0.81   2.6e+02      44      97 ..     269     323 ..     251     348 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 0.0001
    PF13521.1   2 ivitGgpstGKTtlleaLaar....gypvvpEvarev 34 
                  + i G+p+tGKTt+++a+ a     g++v++ +   v
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAVIASlveqGTRVLATAPSNV 198
                  6899*********998875433444888886655555 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.81
    PF13521.1  44 ealpwe.edllafaeavleaqleqeaaaaaskllfcDrglldtlaYarllggdae 97 
                  +a+ ++ ++ ++ +++ l+a+l++ +++ a+++++  r +++t++ a +l+ d e
  MMETSP0890-20130614|37363_1 269 RAAAKSrDKSVRREARALRAELRAREKKLAKQVVIDSRVIFATCVGAARLHDDPE 323
                  4444444556666777888888888888899999999999999986665555523 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.7e-05    0.0056       2      33 ..     161     192 ..     160     201 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.7e-05
                  EEEEE-------HHHHHHHHHHHHH------- CS
    PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyrvav 33 
                   +++ Gp ++GKTt++  ++  l+e+g rv +
  MMETSP0890-20130614|37363_1 161 CFLIHGPPGTGKTTTVAAVIASLVEQGTRVLA 192
                  56889************************985 PP

>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   4.1e-05     0.013       3      96 ..     146     233 ..     144     340 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-05
                  HHHHHHHHHHSS-E..EEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTTSS.EEEEETTSSBHHHHHHHHH CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00270.24   3 iQaeaiplilgggd..vlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkkypklrvlliiggvalardqlsvl 96 
                   Q++a+  +l++     l++++ G+GKT+  +  + + + +        ++l  aP+   + + l+++ +++++ + +       ++++++ql +l
  MMETSP0890-20130614|37363_1 146 GQRQAVAMALNDAVpcFLIHGPPGTGKTTTVAAVIASLVEQ------GTRVLATAPSNVAVDNLLDRVATLLDESSSKKKKKN--NKKKTKQLLRL 233
                  588888888853222356***********999777776644......449******************999988433333322..22223444444 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-05     0.009      49      81 ..     161     193 ..     148     232 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.8e-05
   PF01695.12  49 nlvllGpsGvGKthlAialgveavraglsvlfv 81 
                  ++++ Gp+G+GKt   +a+  + v++g++vl +
  MMETSP0890-20130614|37363_1 161 CFLIHGPPGTGKTTTVAAVIASLVEQGTRVLAT 193
                  899***************************854 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.5e-05    0.0082      34      67 ..     164     195 ..     153     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.5e-05
                  -B-------HHHHHH---HHHH----EEEEEE-- CS
   PF03308.11  34 ltGvPGaGkstlveklikelrrrGkrvavlavDP 67 
                  + G PG+Gk t+v ++i++l+++G+rv  la  P
  MMETSP0890-20130614|37363_1 164 IHGPPGTGKTTTVAAVIASLVEQGTRV--LATAP 195
                  679**********************97..55555 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-05    0.0099      46      81 ..     155     191 ..     147     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3e-05
    PF05496.7  46 reealdhvllyGpPGlGkt.tlakiiakelgvelkvt 81 
                   ++a+   l++GpPG Gkt t+a +ia+ ++   +v 
  MMETSP0890-20130614|37363_1 155 LNDAVPCFLIHGPPGTGKTtTVAAVIASLVEQGTRVL 191
                  56777789**********73689****9777766653 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.5e-05     0.018      20      51 ..     156     187 ..     140     197 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.5e-05
    PF13555.1  20 dpkgkntlltGasGsGKSTllDAiqtlLvpak 51 
                  + +   +l+ G+ G GK+T + A+++ Lv ++
  MMETSP0890-20130614|37363_1 156 NDAVPCFLIHGPPGTGKTTTVAAVIASLVEQG 187
                  4444569******************9998776 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.5   0.00027     0.089       2      19 ..     162     179 ..     161     353 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00027
                  E--B--TT---HHHHHHH CS
    PF13207.1   2 iaitGppGsGKsTlakeL 19 
                   +i+GppG+GK+T   ++
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAV 179
                  79***********98776 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   9.6e-05     0.031       3      55 ..     163     227 ..     162     312 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.6e-05
    PF13671.1   3 llvGlpGsGKstlaerllkklg..........yvrlsqdt......lrkrlfg..tdqqsktdytrvlkrl 55 
                  l++G+pG+GK+t + ++++ l                         l +r++   +++ sk++  + +k++
  MMETSP0890-20130614|37363_1 163 LIHGPPGTGKTTTVAAVIASLVeqgtrvlataP------SnvavdnLLDRVATllDESSSKKKKKNNKKKT 227
                  78***********99987655333233332223......24444445555555432222222222233333 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00018     0.057       2      46 ..     140     186 ..     139     209 .. 0.74
   2 ?   -2.6   0.0       7.4   2.4e+03     146     161 ..     350     365 ..     327     378 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00018
   PF02562.11   2 ikpktkeQkeylealk..kndivfaiGpaGtGKTylavalavealkk 46 
                  i   +++Q++++ +    +    +++Gp GtGKT    a+ ++++++
  MMETSP0890-20130614|37363_1 140 IANLNQGQRQAVAMALndAVPCFLIHGPPGTGKTTTVAAVIASLVEQ 186
                  6778999999999888344457899*********7655555555544 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 7.4
   PF02562.11 146 nskvvvtGditqidlp 161
                  + +++++Gd +q   +
  MMETSP0890-20130614|37363_1 350 GKRAILAGDHKQLAPT 365
                  4578888888887666 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00024     0.077       3      34 ..     161     192 ..     160     201 .. 0.91
   2 ?   -2.3   0.0       5.6   1.8e+03     229     255 ..     308     337 ..     280     338 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00024
    PF12846.2   3 ntlilGppGsGKSvllkklvlqllargprvvi 34 
                   +li GppG GK++++ +++  l+++g+rv+ 
  MMETSP0890-20130614|37363_1 161 CFLIHGPPGTGKTTTVAAVIASLVEQGTRVLA 192
                  57999***********************9975 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 5.6
    PF12846.2 229 iwaaarrnfrapkdlrd...kllviDEahr 255
                  i+a++  ++r+++d  +    ++viDEa +
  MMETSP0890-20130614|37363_1 308 IFATCVGAARLHDDPETnkfDVIVIDEAAQ 337
                  556666666666665557778999999976 PP

>> PF10412.4  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017     0.054       7      48 ..     151     192 ..     147     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00017
    PF10412.4   7 vplpkesetqhilivGttGtGKtqalrelldqirargdraii 48 
                  v++  +  +  +li+G  GtGKt+++  +++++ ++g r++ 
  MMETSP0890-20130614|37363_1 151 VAMALNDAVPCFLIHGPPGTGKTTTVAAVIASLVEQGTRVLA 192
                  566666777789**************************9875 PP

>> PF00448.17  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00024     0.079       4      36 ..     162     194 ..     160     231 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00024
                  EEEE-------TTTHHHHHHHHHHT---EEEEE CS
   PF00448.17   4 illvGlqGaGKTTtlaKLAallkkegkkvllva 36 
                  +l+ G+ G+GKTTt+a + a l ++g++vl  a
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAVIASLVEQGTRVLATA 194
                  6899**************99**99999998665 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0052       1.7       5      35 ..     162     190 ..     159     231 .. 0.64
   2 ?    2.4   0.0      0.38   1.2e+02      61      86 ..     326     351 ..     295     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0052
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyi 35 
                   +i Gp ++GKtt++  ++ +l   e+   +
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAVIASLV--EQGTRV 190
                  68****************99988..333333 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.38
    PF13173.1  61 kkkylflDEiqevpewedalkslvdd 86 
                  k  ++++DE+ ++pe+ +++  l+ +
  MMETSP0890-20130614|37363_1 326 KFDVIVIDEAAQAPEITSWIPLLLGK 351
                  4567*************999888774 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00043      0.14       2      47 ..     162     209 ..     161     239 .. 0.76
   2 ?   -2.1   0.0       7.9   2.6e+03      65      81 ..     326     344 ..     271     351 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00043
                  EEEE------HHHHHHHGGGGB..S--EEEEE--TT--HHHH---B-- CS
    PF07728.9   2 vlLvGppGtgKselaerlaeal..nreveyvqltrdtteedlkgrrei 47 
                  +l+ GppGtgK++ +  + + l  + + +    +++   ++l+ r+ +
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAAVIASLveQGTRVLATAPSNVAVDNLLDRVAT 209
                  5889*******9877766666658777777788888888888887765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 7.9
                  G-SEEEEESGGG--..-HH CS
    PF07728.9  65 egeilvlDEverae..sev 81 
                  + +++v+DE  +a+  +++
  MMETSP0890-20130614|37363_1 326 KFDVIVIDEAAQAPeiTSW 344
                  5578888888877745555 PP

>> PF10236.4  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00041      0.13      19      55 ..     155     191 ..     141     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00041
    PF10236.4  19 kkkktkrvvltGekgsGKSvlLaqavayAlekgwvVl 55 
                   ++++ +++++G++g+GK++++a ++a  +e+g  Vl
  MMETSP0890-20130614|37363_1 155 LNDAVPCFLIHGPPGTGKTTTVAAVIASLVEQGTRVL 191
                  5778889*******************99998876554 PP

>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00075      0.24      70     112 ..     559     601 ..     550     617 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00075
                  HHHHHHH----EEEEEETTEEE-TTHHHHHHHHHHH.-T..T- CS
   PF00535.21  70 rnaglkkatgdyilflDaDdepdpdwleklveklekdgadvvi 112
                  +n ++ +a+  ++l++D+D++ +  ++ +l++++e++g+   +
  MMETSP0890-20130614|37363_1 559 FNVACTRAKRHLCLICDSDTVRTSPFIASLLDHIEEHGDYTYY 601
                  788999******************************9984433 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2    0.0013      0.43      21      53 ..     161     193 ..     155     303 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0013
    PF13476.1  21 ltlItGpNGsGKTTildAiclaLygktsrlkks 53 
                   +lI+Gp G+GKTT   A    L  + +r    
  MMETSP0890-20130614|37363_1 161 CFLIHGPPGTGKTTTVAAVIASLVEQGTRVLAT 193
                  69****************999998887766554 PP

>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00059      0.19       2      34 ..     165     197 ..     164     226 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00059
                  E--TT---HHHHHHHHHHHHHSEE-EEEESS-T CS
   PF02223.12   2 EGlDGaGKttqaellkeklkeqgikvvltrepg 34 
                   G  G+GKtt + ++ + l eqg +v+ t ++ 
  MMETSP0890-20130614|37363_1 165 HGPPGTGKTTTVAAVIASLVEQGTRVLATAPSN 197
                  6888********************999998865 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2    0.0009      0.29       2      53 ..     163     221 ..     163     307 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0009
    PF13238.1   2 litGtpGvGKtTlakeLaerl...gdvlrdlakengleeevddk....idtkeskelde 53 
                  li G+pG+GKtT+  +    l   g  +   a++n  ++ + d     +d+ +sk+ ++
  MMETSP0890-20130614|37363_1 163 LIHGPPGTGKTTTVAAVIASLveqGTRVLATAPSNVAVDNLLDRvatlLDESSSKKKKK 221
                  699*******9876666333446633333333333333333333222233333333333 PP

>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00063      0.21      19      92 ..     159     228 ..     149     234 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00063
                  SEEEEEE-------HHHHHHHTS-SS-----SEEEEEE-----SSHHHHHHHHHHHXXXXXXX-TTSS-HHHHH CS
   PF00931.17  19 lkvvglvGmgGvGKttlakqvykdesveshFdvvawvkvsktakefdlqkdilkeLgkededvsvekneselkr 92 
                  +    ++G +G GKtt++++v  +  ve+  +  +  +   ++   +l+ ++++ L++++++  ++kn++++ +
  MMETSP0890-20130614|37363_1 159 VPCFLIHGPPGTGKTTTVAAVIASL-VEQ--GTRVLATAPSNVAVDNLLDRVATLLDESSSKK-KKKNNKKKTK 228
                  556679***************9883.333..45556666666667778888888888776655.4444444333 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4    0.0016      0.53       6      22 ..     162     178 ..     160     220 .. 0.86
   2 ?   -1.8   0.0       5.3   1.7e+03      71     101 ..     197     228 ..     190     234 .. 0.61
   3 ?   -1.9   0.0       5.7   1.9e+03      66      80 ..     324     338 ..     289     343 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0016
    PF13479.1   6 vliYGkpGiGKTslakt 22 
                  +li G+pG+GKT++++ 
  MMETSP0890-20130614|37363_1 162 FLIHGPPGTGKTTTVAA 178
                  699**********9876 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 5.3
    PF13479.1  71 tlviDsitklerlilaeilkq.kekkskrtgk 101
                  ++ +D++ +   ++l e  ++ k+k++k++ k
  MMETSP0890-20130614|37363_1 197 NVAVDNLLDRVATLLDESSSKkKKKNNKKKTK 228
                  78888875555555555554435555555444 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 5.7
    PF13479.1  66 laeydtlviDsitkl 80 
                   +++d++viD + ++
  MMETSP0890-20130614|37363_1 324 TNKFDVIVIDEAAQA 338
                  568999999977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       868  (0.0634874); expected 273.4 (0.02)
Passed bias filter:                      609  (0.0445436); expected 273.4 (0.02)
Passed Vit filter:                       113  (0.00826507); expected 13.7 (0.001)
Passed Fwd filter:                        42  (0.00307197); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 1.40u 0.40s 00:00:01.79 Elapsed: 00:00:01.07
# Mc/sec: 1386.30
//
Query:       MMETSP0890-20130614|37378_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:01.17
# Mc/sec: 348.19
//
Query:       MMETSP0890-20130614|37376_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.17   11.5   2.5       0.43   10.2   1.7    1.6  1  PF02862.12 DDHD domain


Domain annotation for each model (and alignments):
>> PF02862.12  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7   3.1e-05      0.43      95     193 ..     338     434 ..     300     445 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.1e-05
   PF02862.12  95 esltnigkavkqsvesltsslsegiasslrnsslslssedeeseeeseasklsqksksekkkeseeetkeeeeeakkekreelklralnsngriDYsLq 193
                   +++++ + +k ++++l+ + ++++ +++++++ ++++++  s+ +s+as+++++ ++++++ +ee++  e ++    +++e   ++ ++++++D sL 
  MMETSP0890-20130614|37376_1 338 LLAKHVDAIIKAKADALAADRRRAFLKRWQQHHHNEDEDSGGSRADSSASSSTEEITTNSTNGEEERSVPEYKNVA--SKAEEAQDKKETEQQLDLSLA 434
                  567778888888899999***********99999999999999999999988766666666555555555555555..445555566777888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       700  (0.0511995); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:01.46
# Mc/sec: 994.65
//
Query:       MMETSP0890-20130614|37387_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 178.88
//
Query:       MMETSP0890-20130614|37373_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-187  623.2   0.3     3e-187  623.0   0.2    1.0  1  PF00920.16 Dehydratase family


Domain annotation for each model (and alignments):
>> PF00920.16  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  623.0   0.2  2.2e-191    3e-187       3     521 .]       3     523 ..       1     523 [. 0.97

  Alignments for each domain:
  == domain 1    score: 623.0 bits;  conditional E-value: 2.2e-191
   PF00920.16   3 iigivnsysellpchvhlkelaeavkegvreaGgvpvefntiavsDgiaqgtegmeysllsReliadsievvvrahplDalvllggCDKtvPgllmaaarlniPaivvsgGpmlsgkl.kgkkvdlsdvfeavgalaageiseeelkelekaacpsaGaCagmgTAntmavlaealGlalpgsasipavsserkelakeagrrivelvkedlkprdiltkkafeNAivvllAlGGStNavlHllAiAreagve.ltlddfdeisrkvPllaklkPsGkylvedleaaGGvpavlkeLleaglLhe.dvltvt.gktlaenlkeae..aeeedakvirplsnplkkegglavlkGnLapegaviKlsavkeellkfegpAvvfeseeeaieaikdgelekgdvvviryeGPkGgpGmpemlkltaalagkglgkkvalitDGRfSGaskglvighvsPEAaagGpialvrdgDiieiDienrelnlevseeelaeRraelkppekkkkrgllakyaklvssaeeGa 521
                  ++gi++ ++e +pc++hl +l+e++k++v++aG v++++nti+vsD++a+gtegm+ysl sR+liadsie+v+ a+ +D++++++gCDK++Pg++ma+ rln+P ++v+gG+++ g+l +gk++++ d+fe +g+  ++eis+ee +e+ ++acp+aGaC+gm+TAntma+++ea+Gl+lp++as pa+ +  ++ + ++g+++  l+++dlkprdi+tk+++ NAi++++A GGStNavlHllAiAr+++++ ++ +df++i++ +P+l+++kP Gky++edl+ aGG+pa+l+ L+e+++L    + t++ g t+ae +k++   +e + ++++r+ +np+k+eg+la+l+G+Lap+g+v K++++  e l f+g+A vf+se ++ eai+++++++g+v+viry GPkG+pGmpeml++t++l+g gl +++alitDGRfSG+++g++igh++PEA +gGpi+lv++gD+i+iD++nr+++l+v+++ l++Rr+ ++pp+++ + g+l++y k+vssa++G+
  MMETSP0890-20130614|37373_1   3 QVGIASVWWEGNPCNMHLLDLSERIKKSVEAAGLVGLRYNTIGVSDAMANGTEGMKYSLQSRDLIADSIETVAAAQFYDGIITIPGCDKNMPGAIMALGRLNRPGLMVYGGTIRRGTLsSGKTCNIVDAFEGYGKRLRNEISQEEQEEIIAKACPGAGACGGMFTANTMASAIEAMGLTLPKTASLPAEFK--ETECVQVGSTMRYLLENDLKPRDIVTKDSILNAIAIVTAAGGSTNAVLHLLAIARAFEINdFSYTDFERIGKMTPVLCDMKPWGKYMMEDLHDAGGIPALLHFLHEHNILPApHARTINhGATIAEIAKQYGqrNEPSFSQIVRSPHNPIKSEGHLAILRGSLAPQGSVGKITGK--EGLLFQGKAHVFDSEPQVLEAIESNAISPGSVIVIRYVGPKGAPGMPEMLTVTSMLVGVGLTDSCALITDGRFSGGTHGFCIGHIAPEATEGGPISLVQNGDLIRIDAQNRTIDLLVDQDILDKRRQLWSPPPPAATLGVLSRYIKTVSSAATGC 523
                  89*******************************************************************************************************************97899999***************************************************************876..56799*****************************************************966***********************************************99652789997699********96334444467**********************************..9*********************************************************************************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.77
# Mc/sec: 1636.99
//
Query:       MMETSP0890-20130614|37386_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-24   84.9   0.0    4.9e-24   83.9   0.0    1.5  1  PF00679.19 Elongation factor G C-terminus
    3.2e-24   84.6   0.1    3.1e-21   75.0   0.0    2.2  2  PF03764.13 Elongation factor G, domain IV


Domain annotation for each model (and alignments):
>> PF00679.19  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   7.1e-28   4.9e-24       2      88 ..     124     211 ..     123     212 .. 0.95

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 7.1e-28
   PF00679.19   2 llEPimeveievpeeylgkvisdltkrrGeilsmena.genrvvieaevPlaeligysteLrslTsGrgsfslefsgYepvpgeklek 88 
                  +lEPi ++e++vp+e++g+v++ +++rrG i++ e   +++ v++ a+vPla ++ ys++LrslT+G+g+f++e++++e v+ + + +
  MMETSP0890-20130614|37386_1 124 VLEPISKLEVIVPSEFQGDVLGTINQRRGVITHSEISdDGSIVTLVADVPLAAMFSYSSTLRSLTQGKGEFTMEYKSHERVTPDTQAE 211
                  79******************************999996799****************************************9998765 PP

>> PF03764.13  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00035       2.4      25      44 ..       2      21 ..       1      27 [. 0.84
   2 !   75.0   0.0   4.6e-25   3.1e-21      43     119 ..      44     120 ..      35     121 .. 0.97

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00035
                 ---------EEEEEE----- CS
   PF03764.13 25 ggdgqyakvilriePleggg 44
                 gg gqya+vi rieP ++++
  MMETSP0890-20130614|37386_1  2 GGAGQYARVIGRIEPISEEE 21
                 89*************87554 PP

  == domain 2    score: 75.0 bits;  conditional E-value: 4.6e-25
                  ---EEEE--------GGGHHHHH---TTTT-----------SEEEEEEE----TTT--HHHHHH---HHHHHHHH-- CS
   PF03764.13  43 ggnefvdetkggqvpkefkeavekGfqealkeGplagepvtdvkvtLtdgslhevdsseaafkpaarralkeallkA 119
                  ++++fv+e  g ++p ef++++ekG qea+++G l+g p+ +++v Ltdg++h+vdss++af+ a+  a++ al +A
  MMETSP0890-20130614|37386_1  44 KTFQFVNELIGANIPPEFIPSCEKGAQEAVSKGCLVGAPIENIRVVLTDGVTHPVDSSDLAFRAAMIGAIRGALNTA 120
                  689***********************************************************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:00.62
# Mc/sec: 881.24
//
Query:       MMETSP0890-20130614|37392_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 977.87
//
Query:       MMETSP0890-20130614|37400_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   41.0   0.1      2e-10   40.5   0.1    1.2  1  PF02190.11 ATP-dependent protease La (LON) domain
  ------ inclusion threshold ------
      0.056   11.5   1.7      0.069   11.2   1.2    1.1  1  PF06934.6  Fatty acid cis/trans isomerase (CTI)
       0.25   11.1   7.1       0.28   10.9   3.8    1.9  2  PF03938.9  Outer membrane protein (OmpH-like)
          4    6.8   8.3         13    5.2   2.0    2.5  2  PF04977.10 Septum formation initiator
        8.8    6.4   9.7        2.5    8.1   2.1    2.9  3  PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2


Domain annotation for each model (and alignments):
>> PF02190.11  ATP-dependent protease La (LON) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   7.3e-14     2e-10       9     152 ..      36     206 ..      29     257 .. 0.71

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 7.3e-14
   PF02190.11   9 nkvLfPgiilplnvsepksialierlldrdkpyvglfllksqkddidepsiselysvGtvarIvqilklddgrykivvegleRvkikelkekekeepylvarveriedd......epedseslkkelkalvkeiiekikk...................................arenlkllle 152
                  n  L+Pg+   l+++e++++al e+ ++r+++ ++l  +         ++++++ s G++a+I ++++ld g +  +++++eR +  ++  + +e+p+l a++   ++       +  +s+s++ el a++++++ ++++                                     + +k+l +
  MMETSP0890-20130614|37400_1  36 NECLLPGQARYLHLYEARFLALFEDSIERNDK-IALAYV---------TDTGHMISLGVIAKIEKWQQLDVG-VGATIRAVERMQFLDIDRENEERPFLLAKL---KTFssaaveKTAPSTSNDTELVAVLEDLLYELDElatrhsidlsarrdpaidpramlldydelkqmnekQQQEKKNLAQ 206
                  4569***********************99888.888888.........889***************999866.99***********99999999*****9999...6666678987777777778999999997777777777777777777777777777666555544433221122222222 PP

>> PF06934.6  Fatty acid cis/trans isomerase (CTI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   2.5e-05     0.069     485     596 ..     135     252 ..     106     270 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
    PF06934.6 485 lesekvkleqptaikyktedpkkellekllkklkevlaardkinrlesst.sreelkelakeaekalsslaslkaeglkvlpe.....lsllrieseegkeevysllrnrahsnvasl 596
                  +e+++ +++++t++    ed   el e  +++  +++a+rd+    ++   +++elk+++++++++ ++la++++ +++ l +     ls+l +e ++ ++++y+l  n+ h+  a +
  MMETSP0890-20130614|37400_1 135 VEKTAPSTSNDTELVAVLEDLLYELDELATRHSIDLSARRDPAIDPRAMLlDYDELKQMNEKQQQEKKNLAQRAKVSANELDQsyadiLSYLALEAADPESKIYALTANTNHRLSAAI 252
                  55555566666777777777777777777778888888888766555554677777777777777777777766666666666555679***********************865554 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   2.8e+03      11      30 ..       5      24 ..       2      25 .. 0.74
   2 ?   10.9   3.8    0.0001      0.28      22     129 ..     178     259 ..     158     274 .. 0.56

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1
    PF03938.9 11 aaaaqkpkvgvvdvqkvlka 30
                 +a+  k+ vg+  +q+++++
  MMETSP0890-20130614|37400_1  5 FANKRKSAVGTMKMQRAIQE 24
                 55555788999999999885 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0001
    PF03938.9  22 vdvqkvlkaspkykelqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlqaelqaeqqe...........vlqklidkiadaikkvakek 129
                  +d++  l  ++++k++++k+q+e+k++ q  +  ++el++ ++++ s  a                                                 ++ +  +++ +aik++ ke+
  MMETSP0890-20130614|37400_1 178 IDPRAMLLDYDELKQMNEKQQQEKKNLAQRAKVSANELDQSYADILSYLA-------------------------------------LeaadpeskiyaLTANTNHRLSAAIKQIRKER 259
                  56666666666666666666666666666655555555555555554433.....................................03333333333333333333333333333332 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.0    0.0046        13      25      50 ..     186     211 ..     181     223 .. 0.76
   2 ?    4.2   0.2    0.0095        26      27      46 ..     246     265 ..     227     275 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0046
   PF04977.10  25 eiaalqaelaklkaeneeLeaevkdL 50 
                  ++++l++ ++k+++e+++L+++ k  
  MMETSP0890-20130614|37400_1 186 DYDELKQMNEKQQQEKKNLAQRAKVS 211
                  56788999999999999999988755 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0095
   PF04977.10  27 aalqaelaklkaeneeLeae 46 
                   +l a ++++++e++eL+a+
  MMETSP0890-20130614|37400_1 246 HRLSAAIKQIRKERDELAAK 265
                  35566667777777776665 PP

>> PF10046.4  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.4   1.1e+03      75      90 ..     149     164 ..     135     167 .. 0.85
   2 ?    8.1   2.1   0.00093       2.5      20      65 ..     184     226 ..     179     230 .. 0.80
   3 ?    1.1   0.1      0.15     4e+02      26      51 ..     241     266 ..     215     277 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.4
    PF10046.4  75 vtkLeeavkeLDeysk 90 
                  v+ Le++ +eLDe  +
  MMETSP0890-20130614|37400_1 149 VAVLEDLLYELDELAT 164
                  7789999999999765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00093
    PF10046.4  20 aedlklLeklNeataekykeleqkakslekeleklkqkyeelkpyl 65 
                    d++ L+++Ne++ ++ k+l+q ak   +++++l+q y ++ +yl
  MMETSP0890-20130614|37400_1 184 LLDYDELKQMNEKQQQEKKNLAQRAK---VSANELDQSYADILSYL 226
                  67999**********99988877765...67777778777777776 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.15
    PF10046.4  26 LeklNeataekykeleqkakslekel 51 
                    + N + ++ +k+++++ ++l+ ++
  MMETSP0890-20130614|37400_1 241 TANTNHRLSAAIKQIRKERDELAAKA 266
                  34666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1002  (0.0732885); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.72
# Mc/sec: 935.24
//
Query:       MMETSP0890-20130614|37402_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-141  471.6   0.1   4.5e-141  471.3   0.0    1.0  1  PF02514.11 CobN/Magnesium Chelatase


Domain annotation for each model (and alignments):
>> PF02514.11  CobN/Magnesium Chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.3   0.0  3.3e-145  4.5e-141     557    1097 ..      16     547 ..       6     548 .. 0.88

  Alignments for each domain:
  == domain 1    score: 471.3 bits;  conditional E-value: 3.3e-145
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02514.11  557 fleelddyLeelkesqipdGLHvlGeapegeel..velvlailrddaeseveeeslaellaealgldarseaaalelleevaknltspseaeeeklneseeatktqeavevaelleealelaerlasaseEieall.kALdGkyippgpggdpirgp.dvLPTGRNfysvDpraiPteaAwevGkklaeelleryleehgeyPekvalvlwgtetmrtkGediAqilallGvrpvwdesgrvtgvelipleeLgRPRIDVvvrisGlfRDafpnlvelideAvrlvaeldepeeeNyvrkhsle.eekelleegl...eeeeaeelaklRvFgsapGtYgagvqelvesssweneseLaeaYlnrmsyaYgkkewgeearelleeaLskvdavvqsrdsneydlldsddyyeflGGlaaavrsls..GedpelyigDls.dpdeprvrtleeelarelrsrllNPkWiegmmkhGykGaaeiaatvenlfgwdattdaVddwvyeevaetyvldeemreflaeeNpwAlqeiaerllEaarrglWdaddetl 1097
                     ++l++yL +++++ +++GLHvlG+ pe+e+    ++ +a ++dd    + ++++ ++++++ ++  + ++++ ++l+ + ++lt+    +    +e+ +           +l eea+ l++ l+++ +E+ +l+ k+L+G+y+ppgpggd++r+   vLPTGRN+y++Dp ++P+++A+ +G+kla+e+ er+++++g++Pe+v++++w+++ ++tkGe++A + al+G rpv+d  grv+++e ipleeL RPRIDV++++sG+fRD f+n+v l+d+ ++ va+ldep   Ny+rkh+ + +++e  ++++   ++++a+e+ ++R+F+++ G+Yg+ v ++v s++we+ s+L++++ +r+ yaYg++++g +++++l   Ls++d+vvq+ ds ey+++d+++y +  G+l++av++ +  G+++++ +++   ++de  vr+l+e l+ e+r++llNPkW + m ++G  Ga+ei+++++  +gw+at+  Vdd v+++ ae+y+ld+e+   l+++Np A+++i++rllE+a rg+W+a++++l
  MMETSP0890-20130614|37402_1   16 WARDLRTYLVQVRQRFFSTGLHVLGKIPEDEDAllEAYFAASVEDD----EIRSHIIQASVDKTQV-PDWQKQLNDWLHSIFSSLTN----TDVSFAETLD----------PHLVEEAQLLRAGLRATGDELINLVeKGLNGRYVPPGPGGDVMRDGaGVLPTGRNIYALDPYRMPSKQAFVRGQKLANEIAERHRNQTGNWPETVSVSCWAMDCIKTKGESVAIAVALVGGRPVRDLGGRVVRFEPIPLEELSRPRIDVLCTLSGIFRDSFENVVLLLDDFFDSVARLDEPITLNYIRKHAITtIYDENDDNANvpsTASTAQEMETARLFSNPAGDYGSLVADAVVSGEWEDSSQLGDTWAARNAYAYGRSSKGIAKPKALDYLLSTTDLVVQELDSIEYGITDIQEYHANTGALKKAVETRRadGSQIKVALVEAItSGDERPVRDLDETLRLEYRTKLLNPKWSDMMIEQGAGGAFEISQRMTAALGWAATN-GVDDFVFNQAAERYALDKEVATKLQKANPEAFKNIVSRLLEVAARGYWNASEDVL 547 
                   456799**********************988751144444444444....2233444443322222.44455555566666655533....3333333322..........3478899999999*******9999857***************************************************************************************************99**************************************************************86515666666666777899999***********************************************99***********************************************976554499**999888752778888**********************************************9986.69**************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.41s 00:00:01.34 Elapsed: 00:00:00.90
# Mc/sec: 1507.04
//
Query:       MMETSP0890-20130614|37404_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-12   47.1   0.6    2.1e-12   47.1   0.4    2.0  2  PF07743.8  HSCB C-terminal oligomerisation domain
    9.5e-09   34.7   0.2    1.9e-08   33.7   0.1    1.6  1  PF00226.26 DnaJ domain
  ------ inclusion threshold ------
      0.043   13.7   0.0         10    6.1   0.0    2.6  2  PF08112.6  ATP synthase epsilon subunit
        0.1   12.1   0.0       0.18   11.3   0.0    1.4  1  PF00608.12 Adenoviral fibre protein (repeat/shaft region)


Domain annotation for each model (and alignments):
>> PF07743.8  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.37   1.3e+03      67      75 ..      76      84 ..      39     114 .. 0.67
   2 !   47.1   0.4   6.3e-16   2.1e-12       3      77 ..     130     201 ..     128     202 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.37
    PF07743.8 67 kYleklqee 75
                 k+ +k qee
  MMETSP0890-20130614|37404_1 76 KFAQKSQEE 84
                 444444443 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 6.3e-16
    PF07743.8   3 dpeFLmeqMelrEaLedaqasdddealeelkkevearikellaelaealdaedweeAadavrrlkYleklqeeik 77 
                  d+e+L e++e rEa++++   +d+ +l+++ +++++ i+    ++ +++ ++d+e Aa++++rl+Y+ k++ ei+
  MMETSP0890-20130614|37404_1 130 DMELLTEILETREAVDEC---QDEMQLRQICDQNDSLIRSTHRDVHDLYISGDFESAAHLLVRLQYYLKIRLEIR 201
                  99****************...778***********************************************9986 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   5.7e-12   1.9e-08       3      62 ..      45     110 ..      43     112 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 5.7e-12
                  HHHTT--T..T--HHHHHHHHHHHHHHT-TTT--SCC....HHHHHHHHHHHHHHHHHTSHHHHHH CS
   PF00226.26   3 YeiLgvpk..dasdeeIkkaYrklalkyHPDknkdde....eeaeekfkeineAyevLsdpekrae 62 
                  +e+L +p   d +  ++  + r l +++HPDk+ +++    ++ae  +++in+Ay + +dp++ra+
  MMETSP0890-20130614|37404_1  45 FELLSIPAgiDVDMRKVEANMRALQRRLHPDKFAQKSqeerKKAELVSAKINAAYAIIRDPLTRAN 110
                  7899999988999999************************999*********************97 PP

>> PF08112.6  ATP synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.003        10       9      27 ..      27      45 ..      22      51 .. 0.85
   2 ?    4.8   0.0    0.0079        27      17      35 ..      80      99 ..      71     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.003
    PF08112.6  9 iDKYlniLkskLdeKKsEl 27
                  DK   +L+s+L   K+E 
  MMETSP0890-20130614|37404_1 27 FDKDTGVLRSSLKREKNEF 45
                 689999***********84 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0079
    PF08112.6 17 kskLdeKKsElLk.kiNmEY 35
                 ks+ + KK El++ kiN  Y
  MMETSP0890-20130614|37404_1 80 KSQEERKKAELVSaKINAAY 99
                 78889******976899888 PP

>> PF00608.12  Adenoviral fibre protein (repeat/shaft region)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.2e-05      0.18      10      24 ..     104     118 ..     102     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.2e-05
                  ---EE----EE---- CS
   PF00608.12  10 pGLtvtnnaLalklG 24 
                  ++Lt  n+a+alklG
  MMETSP0890-20130614|37404_1 104 DPLTRANSAIALKLG 118
                  8*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 803.70
//
Query:       MMETSP0890-20130614|37408_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   18.4   0.0     0.0012   18.2   0.0    1.1  1  PF13862.1 p21-C-terminal region-binding protein


Domain annotation for each model (and alignments):
>> PF13862.1  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.7e-08    0.0012     101     152 ..      23      71 ..       7     112 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 8.7e-08
    PF13862.1 101 kklkkllsss.kkkvglllseRliNmPlevvpplykmLleevewaqekekkyk 152
                  ++l+ + s + +++ ++l   +l+N+P++++ + y+ L ++++++q+    ++
  MMETSP0890-20130614|37408_1  23 DNLRAAASPDsRNNYAFLARGYLVNVPPKIIATTYRLLRDDLAKMQT----FR 71 
                  66777777666999*******************************98....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.68
# Mc/sec: 535.66
//
Query:       MMETSP0890-20130614|37409_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0046   16.8   0.4      0.026   14.3   0.0    2.1  2  PF03235.9  Protein of unknown function DUF262
  ------ inclusion threshold ------
      0.013   15.4   3.7      0.024   14.5   2.5    1.4  1  PF06818.10 Fez1
      0.015   14.3   0.5      0.035   13.1   0.0    1.8  2  PF14072.1  DNA-sulfur modification-associated
      0.016   15.1   0.0      0.047   13.6   0.0    1.8  1  PF02195.13 ParB-like nuclease domain
       0.12   11.8   0.0       0.22   10.9   0.0    1.4  1  PF08695.5  Cytochrome oxidase complex assembly protein 1
        0.3    8.2   7.1       0.42    7.7   4.9    1.1  1  PF12128.3  Protein of unknown function (DUF3584)
       0.36    9.9  14.1      0.048   12.8   4.6    2.2  2  PF12795.2  Mechanosensitive ion channel porin domain
       0.38    9.9   6.7       0.64    9.1   4.7    1.3  1  PF00529.15 HlyD family secretion protein
       0.54    8.7   6.9        0.8    8.1   4.4    1.5  2  PF08317.6  Spc7 kinetochore protein
       0.58    9.6  10.2          1    8.8   7.1    1.4  1  PF04156.9  IncA protein


Domain annotation for each model (and alignments):
>> PF03235.9  Protein of unknown function DUF262
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2       0.3   4.1e+02     119     165 ..      26      66 ..       3     132 .. 0.46
   2 !   14.3   0.0   1.9e-05     0.026      57      96 ..     196     266 ..     159     369 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.3
    PF03235.9 119 klirseklsllekeelaelnsltkkdlakeekrneeknlikayevie 165
                  +l ++ +++++++e      s+t +  a+++k  e ++l  a++ i+
  MMETSP0890-20130614|37409_1  26 SLTEELTNAKSKLE------SATATLEASQKKISEVPRLELALKEIR 66 
                  11122222222211......222222222222222222222222222 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.9e-05
    PF03235.9  57 geleviDGQQRltTltlllaa.........t.......keesekdiknleaeiek...............e 96 
                  +  +v+DGQ+Rl + +ll ++                  e+ +kdi nl aei+k                
  MMETSP0890-20130614|37409_1 196 DSGYVVDGQHRLGAAWLLKNQddidaslheIlievypaTENTHKDIFNLFAEINKaepvplidmphdqveG 266
                  5668*************999976666554404455666777788888888888777777666666444442 PP

>> PF06818.10  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.5   1.8e-05     0.024      15     108 ..       6      95 ..       2     139 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.8e-05
   PF06818.10  15 LkqqLkesqaelaqkaseilsLraqlrearaelqeseeklqelkdalrtktleLevceneLqrkkseaellrekagrleaelaelrealasagt 108
                  L   Lk + +  a+k + + sL  +l +a+++l++  ++l+  ++ ++     Le++ +e+   +s ae+ r ka + e el + r++l++++ 
  MMETSP0890-20130614|37409_1   6 LERELKAASSAFANKENSLKSLTEELTNAKSKLESATATLEASQKKIS-EVPRLELALKEI---RSAAEIERAKARHAESELFRTRDELEKKTG 95 
                  77899999*************************998887776666554.466777777777...899*********************998832 PP

>> PF14072.1  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.86   1.2e+03     252     288 ..      17      53 ..       6     125 .. 0.58
   2 ?   13.1   0.0   2.6e-05     0.035     105     156 ..     199     253 ..     184     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.86
    PF14072.1 252 vfqkenssvelrenslaahsvvlkalgklakklkref 288
                  +++kens ++l+e+  +a+s +  a + l ++ k+++
  MMETSP0890-20130614|37409_1  17 FANKENSLKSLTEELTNAKSKLESATATLEASQKKIS 53 
                  4444444444444444444444444444333333333 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.6e-05
    PF14072.1 105 lilDGQHRlaaieealeesp.elgdetisvvlv..ldlglersqqlFadlNknak 156
                  +++DGQHRl a     ++++ + + ++i ++++  ++ + +   +lFa +Nk+  
  MMETSP0890-20130614|37409_1 199 YVVDGQHRLGAAWLLKNQDDiDASLHEILIEVYpaTENTHKDIFNLFAEINKAEP 253
                  69*******998777666665555558888888878888888999******9865 PP

>> PF02195.13  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-05     0.047      15      75 ..     162     232 ..     153     241 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.4e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX---------........---------- CS
   PF02195.13  15 prldspekleelvasikeagllqPiivrkvr..qgryeiidGerRlrAakrlg........akevpvivle 75 
                   r+d ++ ++e +++ + +g+  ++ +++++   +  +++dG++Rl Aa +l+        + e+ + v +
  MMETSP0890-20130614|37409_1 162 FREDRAKMIAESKKQAQVKGWPGALCIAETAdlPDSGYVVDGQHRLGAAWLLKnqddidasLHEILIEVYP 232
                  45455666666666666699999999999999*****************9998766666555555555555 PP

>> PF08695.5  Cytochrome oxidase complex assembly protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.22      19      92 ..      48     119 ..      38     126 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
    PF08695.5  19 fnyektsssvvrsalyqlrrspevrelLGeeiplksswpwisGsintvqGkidlsfsvkGskgeGtvyltasRe 92 
                   ++++++ + ++ al+ +r+  e+  +  +    +s++++  +++++  G++++  +v+G +++  + +ta+R 
  MMETSP0890-20130614|37409_1  48 SQKKISEVPRLELALKEIRSAAEIERAKAR--HAESELFRTRDELEKKTGEAKFVQPVRGMNEAVNLVVTANRA 119
                  566777777788899999999999998888..9999************************************97 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.9   0.00031      0.42     430     517 ..       7      98 ..       2     118 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00031
    PF12128.3 430 rkqleaqkeelneee...kelesrleelklrldsatateeeleqleaadealekaqeelekaea.evealqseeeqlrkkrdealealqkae 517
                  + +l+a+ ++++++e   k l+++l ++k++l+satat e ++++  ++ +le a +e+++a + e+ ++ ++e +l   rde +++  +a+
  MMETSP0890-20130614|37409_1   7 ERELKAASSAFANKEnslKSLTEELTNAKSKLESATATLEASQKKISEVPRLELALKEIRSAAEiERAKARHAESELFRTRDELEKKTGEAK 98 
                  44444555555444411156778889999999999999999999999999999998888765541566677777888888888888776654 PP

>> PF12795.2  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.6   3.5e-05     0.048      79     157 ..       2      81 ..       1      96 [. 0.77
   2 ?    1.5   0.5     0.097   1.3e+02      70      99 ..     318     347 ..     303     368 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.5e-05
    PF12795.2  79 slsqLeqelaqtssqLqelqeqlqqensqlielqtrperaqqqlsearrrlqeienrLqalkpege.tplseaqrtllqa 157
                  ++++Le+el+ +ss+ ++ ++ l++  ++l+++ + +e a ++l++ +++++e+ +   alk+  + ++++ a+    + 
  MMETSP0890-20130614|37409_1   2 TIKRLERELKAASSAFANKENSLKSLTEELTNAKSKLESATATLEASQKKISEVPRLELALKEIRSaAEIERAKARHAES 81 
                  5789*************************************************855433443433224444444444444 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.097
    PF12795.2  70 avkqelanlslsqLeqelaqtssqLqelqe 99 
                    +++ + ls +qL   l++++s+L++l+ 
  MMETSP0890-20130614|37409_1 318 RNSKDDSALSGEQLLELLLEQNSKLAALSP 347
                  56788899*****************99875 PP

>> PF00529.15  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.7   0.00047      0.64      87     174 ..       9      96 ..       3     123 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00047
                  HHHHHHHH...........HHHHHHHHHHHHTTEEE-S--.-----BSS-B---------S-SEEEEEESSEEEEEEE-HHHHHHHHHH CS
   PF00529.15  87 arrearealaasqa.laaskaeleaardnlasaeaalpaslgsikasqatlgalltnlqaqglaakaqldeaklqlaqtaaelarsira 174
                  ++ +a +a+a+    l++  +el++a+ +l+sa+a+l+as+ ++  +   l+ +l+    ++ +++a++  a+ +l +t+ el+++ ++
  MMETSP0890-20130614|37409_1   9 ELKAASSAFANKENsLKSLTEELTNAKSKLESATATLEASQ-KKISEVPRLELALKEIRSAAEIERAKARHAESELFRTRDELEKKTGE 96 
                  4455677777777799999*********************5.55555555555556668888888888888888888888888877665 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.4   0.00058       0.8     208     281 ..      14      86 ..       1     103 [. 0.49
   2 ?   -3.3   0.0       1.8   2.5e+03     164     204 ..     272     312 ..     270     330 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00058
    PF08317.6 208 seeleklreeLssleekieekrkkleeleeelqelkkkiealkekkselleeiaeaekileecrgfsakeiskl 281
                  s+ +++  + L+sl+e++++ ++kle  ++ l++++kki+++    +  l+ei++a +i + + ++ ++e+ + 
  MMETSP0890-20130614|37409_1  14 SSAFANKENSLKSLTEELTNAKSKLESATATLEASQKKISEVPRL-ELALKEIRSAAEIERAKARHAESELFRT 86 
                  223333344455555555555555555555555555555544432.3334455555555555555555555544 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.8
    PF08317.6 164 deellnkklelinsilpklrekkealkeelasLrqlkdele 204
                  + + ++  +++++s++p++ + + + +  + +L++l++e+ 
  MMETSP0890-20130614|37409_1 272 ERQVIDFAANQLKSMFPDMFKPSRNCRPPHLNLDNLRNEIH 312
                  55666677888888888888888888888888888888854 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.1   0.00074         1      97     185 ..       3      87 ..       1      93 [. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00074
    PF04156.9  97 leqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlqeklaelq 185
                  + +le++l++ +s + + e+ l++l eel+  +++les++  +++ +k+i+e+     +l+ +++e rs++e +++  ++++ +l + +
  MMETSP0890-20130614|37409_1   3 IKRLERELKAASSAFANKENSLKSLTEELTNAKSKLESATATLEASQKKISEVP----RLELALKEIRSAAEIERAKARHAESELFRTR 87 
                  66899999999999999999999999**************************99....5555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       965  (0.0705822); expected 273.4 (0.02)
Passed bias filter:                      595  (0.0435196); expected 273.4 (0.02)
Passed Vit filter:                       110  (0.00804564); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.90u 0.42s 00:00:01.32 Elapsed: 00:00:00.96
# Mc/sec: 973.52
//
Query:       MMETSP0890-20130614|37417_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   10.9  11.9          2    7.4   4.7    2.4  2  PF05384.6 Sensor protein DegS
       0.51   10.2   7.6       0.68    9.8   0.9    2.6  2  PF06657.8 Centrosome microtubule-binding domain of Cep57
        1.1    8.0  17.0        2.6    6.8  10.9    2.0  1  PF08172.7 CASP C terminal
        1.2    8.7  10.4       0.87    9.1   1.4    3.1  2  PF11471.3 Maltoporin periplasmic N-terminal extension
        4.2    5.4   9.4        5.3    5.1   6.5    1.1  1  PF08192.6 Peptidase family S64
        9.4    5.5  26.9       0.79    9.0  10.9    2.2  2  PF12240.3 Angiomotin C terminal


Domain annotation for each model (and alignments):
>> PF05384.6  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.9    0.0036       8.2     110     143 ..       1      34 [.       1      45 [. 0.68
   2 ?    7.4   4.7   0.00089         2      62     122 ..      60     119 ..      30     138 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0036
    PF05384.6 110 lerrLknlketieraekLvsqvsvvlnyLsgdlk 143
                  +e++L+++++  +rae+  +++ vvl   +++ k
  MMETSP0890-20130614|37417_1   1 IEMKLQRAEREAQRAEQARAKLDVVLRSFQKQQK 34 
                  5777777777777777777777777766655544 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00089
    PF05384.6  62 krLaeVSreFekyseeeikeaYekakelqvklallreeEkqlrkrRdelerrLknlketie 122
                  +rLa+     + yse++  +a ++a     ++  +r   +  +++Rd+l rrL++l e  +
  MMETSP0890-20130614|37417_1  60 ARLADLE-AARLYSEQKANRAIDTAAMADAEMHAARAALNAAIAQRDNLARRLVTLIEETR 119
                  4444443.23579****************************************99755433 PP

>> PF06657.8  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.9    0.0003      0.68       4      38 ..      33      67 ..      30      78 .. 0.85
   2 ?    3.7   0.4     0.023        52       7      53 ..      99     143 ..      93     162 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0003
    PF06657.8  4 terpsqspkeaLaevlkeLeDElehlkmeyqelad 38
                 + + + + + +L+++l++Le El+h   ++++l++
  MMETSP0890-20130614|37417_1 33 QKQDQTEVQIELESRLAQLETELGHRDARLADLEA 67
                 5566778899**********************965 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.023
    PF06657.8   7 psqspkeaLaevlkeLeDElehlkmeyqeladelkkldaslskrkrk 53 
                  ++ ++ ++La++l +L +E +     ++el   +k+ + s ++++++
  MMETSP0890-20130614|37417_1  99 AAIAQRDNLARRLVTLIEETRKRTTNQEEL--LIKQSKTSHDNSSSN 143
                  56788999***********99999999999..555544444444443 PP

>> PF08172.7  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  10.9    0.0011       2.6      12     125 ..      31     140 ..       1     142 [. 0.72

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0011
    PF08172.7  12 naeleesqelnekLEnDlatvqaeisasrafnenaslasgvtrriaessrsgklsPtssiasgfgessslLpiitsQRDRFkkRnteLEeelrkleqtvsslrqelaklkaDnl 125
                  +++ +++ e+   LE+ la++++e  ++ a   + + a++++++ a+++ +   + +  + +++      L+  ++QRD + +R   L ee rk  +++++l  + +k++ Dn+
  MMETSP0890-20130614|37417_1  31 KQQKQDQTEVQIELESRLAQLETELGHRDARLADLEAARLYSEQKANRAIDT--AAM--ADAEMHAARAALNAAIAQRDNLARRLVTLIEETRKRTTNQEELLIKQSKTSHDNS 140
                  4555666666666777777777666666665565666666666666654322..222..23344899999******************************************97 PP

>> PF11471.3  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.0     0.027        62      38      53 ..       2      17 ..       1      23 [. 0.73
   2 ?    9.1   1.4   0.00038      0.87      30      51 ..      44      65 ..      41      79 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.027
    PF11471.3 38 EkeLqenkqeLqktkd 53
                 E +Lq ++ e+q++++
  MMETSP0890-20130614|37417_1  2 EMKLQRAEREAQRAEQ 17
                 7777777777777776 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00038
    PF11471.3 30 vEQRLelLEkeLqenkqeLqkt 51
                 +E RL++LE+eL    ++L + 
  MMETSP0890-20130614|37417_1 44 LESRLAQLETELGHRDARLADL 65
                 799*********9999999765 PP

>> PF08192.6  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.5    0.0023       5.3       6     159 ..      29     173 ..      23     194 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0023
    PF08192.6   6 fgkkkkkekeekesedvsrdseenkalkssss..esqsslaelealkesedastkaaasvqsssifskgslnlnpsisntnesatsvskksgekvekslfskkdskkslstkqssytslnavaeeesktsqasskksslessqplqtlnikeesee 159
                  f+k++k++++e +    + +s+  + l++     + +  + e+  l ++++a+  + +++ + + ++ ++++ln+ i +  + a  +++   e+ ++     ++ ++ l +kqs+ +  n+ + ++  +s  ++k++s+++s++ + ++ +e++++
  MMETSP0890-20130614|37417_1  29 FQKQQKQDQTEVQI---ELESRLAQ-LETELGhrDARLADLEAARLYSEQKANRAIDTAAMADAEMHAARAALNAAIAQRDNLARRLVTLIEETRKR-----TTNQEELLIKQSKTSHDNSSS-NNGASS-LENKEKSFNASSLQTRSTLEEKKQK 173
                  44444332222222...22222221.12222112555566666677788888888999999999999999999999999777776664443333333.....334466667766653333333.333332.3334444455544444444444444 PP

>> PF12240.3  Angiomotin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  10.9   0.00034      0.79      16     106 ..       6      93 ..       3     106 .. 0.76
   2 ?    1.8   4.4     0.056   1.3e+02       7      70 ..      89     153 ..      87     192 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00034
    PF12240.3  16 qaacEkREqlErrLRtrleqelkslraqqrqaqssgassssynasaLkeqlREkeeriLaLEAditkwEqkyLEEstmRqfAldaaataaa 106
                  q a E+  q   + R +l+  l+s+++qq+q q++     +   ++L+ +l  +++r+  LEA     Eqk   ++++   A+  a+  aa
  MMETSP0890-20130614|37417_1   6 QRA-EREAQRAEQARAKLDVVLRSFQKQQKQDQTEVQIELESRLAQLETELGHRDARLADLEAARLYSEQKA--NRAIDTAAMADAEMHAA 93 
                  544.7777778899*******************99888888799**************************95..34444444444443333 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.056
    PF12240.3   7 rlqqALaqLqaacEkREqlErrLRtrleqelkslraqq....rqaqssgassssynasaLkeqlREke 70 
                   +  A a L aa  +R++l rrL t +e+  k   +q     +q+++s+ +sss   ++    l +ke
  MMETSP0890-20130614|37417_1  89 EMHAARAALNAAIAQRDNLARRLVTLIEETRKRTTNQEelliKQSKTSHDNSSS---NNGASSLENKE 153
                  577899999**************9999988777666652222233333333333...33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2046  (0.149649); expected 273.4 (0.02)
Passed bias filter:                      676  (0.0494441); expected 273.4 (0.02)
Passed Vit filter:                        74  (0.00541252); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.62
# Mc/sec: 788.48
//
Query:       MMETSP0890-20130614|37421_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-21   76.9   0.3    2.2e-21   75.8   0.2    1.5  1  PF00447.12 HSF-type DNA-binding
     0.0032   16.3   0.6     0.0043   15.9   0.4    1.2  1  PF07034.6  Origin recognition complex (ORC) subunit 3 N-terminus
  ------ inclusion threshold ------
       0.14   11.9   3.8       0.22   11.3   2.6    1.2  1  PF10392.4  Golgi transport complex subunit 5
       0.55   10.5   3.9       0.46   10.8   1.3    1.7  2  PF13600.1  N-terminal domain of unknown function (DUF4140)
        8.8    6.1  12.8       0.57    9.9   3.3    2.4  3  PF12329.3  TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> PF00447.12  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.2   7.9e-25   2.2e-21      20     103 ..       1      80 [.       1      81 [. 0.97

  Alignments for each domain:
  == domain 1    score: 75.8 bits;  conditional E-value: 7.9e-25
   PF00447.12  20 swsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFhkvkdeekkskkkekiweFkhksFkkgkkellekikrkkse 103
                  +ws++g++++++d+ +fa ++ p+yF+h+nf+SF+R LnmY+Fhkv++ + +     k++ F+h +F ++kk+ l+ki+rk+s+
  MMETSP0890-20130614|37421_1   1 RWSDDGTKVLIMDPARFAVEICPRYFRHRNFNSFTRLLNMYQFHKVQNASPD----AKVVCFAHFHFLRDKKDGLSKIQRKSSS 80 
                  6*************************************************98....99***********************987 PP

>> PF07034.6  Origin recognition complex (ORC) subunit 3 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   1.6e-06    0.0043      34      84 ..      98     148 ..      66     167 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.6e-06
    PF07034.6  34 ayeklWekikseieelqdelnakildqllefvressasrqeeareteskvk 84 
                  + +++Wek ++ei+++q++l  + l+++ +++r+    + e ++  e++ +
  MMETSP0890-20130614|37421_1  98 VARDVWEKTNQEIDQMQKRLRPESLASVSTWMRKVLDLERETKQLRETNHR 148
                  5689******************************87666555444444333 PP

>> PF10392.4  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.6   7.9e-05      0.22      36     110 ..     104     178 ..      95     181 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.9e-05
    PF10392.4  36 krlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalk 110
                  ++ n+ i++++krlr +  ++ ++ + ++ + + + + l e + +l ++++   +l s++    + + kl+++++
  MMETSP0890-20130614|37421_1 104 EKTNQEIDQMQKRLRPESLASVSTWMRKVLDLERETKQLRETNHRLRQMEKDRAQLCSQIAAQNQLILKLRAEIQ 178
                  7999*********************************************************99999999998776 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.9   2.4e+03      66      79 ..     104     117 ..      69     121 .. 0.67
   2 ?   10.8   1.3   0.00017      0.46      51     102 ..     123     172 ..     119     174 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.9
    PF13600.1  66 daaseelaeleael 79 
                  +++++e+++ +++l
  MMETSP0890-20130614|37421_1 104 EKTNQEIDQMQKRL 117
                  34455555555555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00017
    PF13600.1  51 lsvsvrrrdlqekdadaaseelaeleaelraledelarleaekealeariaf 102
                  +svs+  r++   d + ++++l+e +++lr++e+++a+l ++++a ++ i +
  MMETSP0890-20130614|37421_1 123 ASVSTWMRKVL--DLERETKQLRETNHRLRQMEKDRAQLCSQIAAQNQLILK 172
                  56665444444..678999**************************9988765 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.6   7.2e+03      44      52 ..      70      78 ..      64      86 .. 0.43
   2 ?    1.3   0.1       0.1   2.8e+02      57      71 ..     104     118 ..      98     121 .. 0.81
   3 ?    9.9   3.3   0.00021      0.57       4      45 ..     139     180 ..     136     182 .] 0.92

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.6
    PF12329.3 44 elekeieel 52
                  l k +++ 
  MMETSP0890-20130614|37421_1 70 GLSKIQRKS 78
                 333333333 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.1
    PF12329.3  57 eklekeleeleerlk 71 
                  ek ++e++++++rl+
  MMETSP0890-20130614|37421_1 104 EKTNQEIDQMQKRLR 118
                  677888888888885 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00021
    PF12329.3   4 ekklkeKdeqIaqLmeEgekLskkelkhnntikkLrkknkel 45 
                   k+l+e + +  q  +   +L ++ +++n+ i kLr+++++ 
  MMETSP0890-20130614|37421_1 139 TKQLRETNHRLRQMEKDRAQLCSQIAAQNQLILKLRAEIQQR 180
                  799************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1068  (0.0781159); expected 273.4 (0.02)
Passed bias filter:                      563  (0.0411791); expected 273.4 (0.02)
Passed Vit filter:                        61  (0.00446167); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 822.90
//
Query:       MMETSP0890-20130614|37423_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-40  139.0   0.0    1.8e-40  138.6   0.0    1.1  1  PF00069.20 Protein kinase domain
    7.8e-38  129.9   0.0      2e-37  128.6   0.0    1.6  1  PF07714.12 Protein tyrosine kinase
      0.008   15.1   0.0      0.012   14.6   0.0    1.2  1  PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   3.9e-44   1.8e-40       5     251 ..      49     336 ..      45     342 .. 0.87

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 3.9e-44
                  EEEE----EEEEEEEETTCCE...EEEEEEEEGGGHHHHHHHHHHH.......HHHHHHHH.H-TTB--EEEEEEE.STEEEEEEE--SC-EHHHHHH....HHCCB..-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--E..EE------EEE..................CEESS-CSS----GGGS-HHHHH.....TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--H CS
   PF00069.20   5 eklGsGsfGkVykakkkktgk...kvAvKilkkeeekskkektavr.......Elkilkkl.sHpnivkllevfee.kdelylvleyveggdlfdllk....kegkl..seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgel..kiaDFGlakkl..................eksseklttlvgtreYmAPEvll.....kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlta 251
                   +lGsG+fG V k k  +  k    vAvK+ k+  ++  ++   ++       E++ ++ l +H ni+++l++ e+ ++  +l+ ey++ g+l ++l+    +++ l      ++ +al++++++++lH +g iH DLKp+NiL +++++l  k++DFG a++l                  ++s    + +vgt  YmAPE+l      +a++y +kvD +s+G+ +++l+ +++++ ++   ++l++++ +++  l+ +++ + +  + l  l+++++++ p++R+ +
  MMETSP0890-20130614|37423_1  49 PILGSGTFGLVKKLKLVSRTKnfiFVAVKCPKYLLSDTMESPWLQEelesfrvEAYAVAALdHHLNICRVLGIAESiSRGPCLICEYMDLGSLEHVLNdqddESNILssIPFAARICALHVARAMAFLHGKGMIHLDLKPANILATSQHSLifKVSDFGTARVLidvndknrrrrskdnrniHSSPMLESFRVGTFGYMAPELLVdddsdTAPYYNAKVDCFSFGICIWNLAANRNIWWKDLASNALAFLHAVKNDGLRPMIEPHFD--PILSALMTRCWAHRPQDRPHF 336
                  579********999999888867779999977765444333222224457999********7799***********9999******************99976666653456889999****************************9998889*********99************99997444444556689**********88888889******************************99********9999999999988866..9*****************976 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   4.4e-41     2e-37       6     258 ..      50     342 ..      45     343 .. 0.77

  Alignments for each domain:
  == domain 1    score: 128.6 bits;  conditional E-value: 4.4e-41
                  EE-------EEEEEEETTTTSSEEEEEEEEECT...TSB.....HHHHHHHHHHHHHHHHT.-BTTB--BEEEBE.SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHH.....HHHHHHHHHHHHHTTEEEST-SGGGEEEETTT..EEEE-----CEES..........TTTSCEEESTT-E...E.........CGGGS-HHHHHHSE......EEHHHHHHH---HHHHHHTTT-GTTTTS..HHHHHHHHH.HTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
   PF07714.12   6 klGeGafGkVvegtlkgekekkevkVavKtlke...sae.....eeekeefleeakimkkl.khpnivkllgvct.keepllivteyvkgGdLlefLrkkekekltlkdllkf.....alqiakGmeyLeskklvHrdLaarNvLleeek..vvkisDfGLardi..........ekddyykkkeeak...l.........pvkWmapEslkekk......ftsksDvWsfGvllwEiftlgespypgl..sneevlell.kegkrlekpekcpeelyelmkqCweeepeeRptfkelvek 258
                   lG+G+fG V + +l  +++k+ + VavK+ k    +++     +ee e+f  ea ++ +l +h ni ++lg+    ++  +++ ey++ G+L+++L+++ +++ ++   + f     al++a++m++L+ k ++H dL   N+L ++++  + k+sDfG ar +                 +k++++              + +mapE+l +        ++ k D +sfG+++w ++ + +  +++l  ++  +l+++ ++g r +   +  + l  lm++Cw+++p++Rp+f +l+ +
  MMETSP0890-20130614|37423_1  50 ILGSGTFGLVKKLKLV-SRTKNFIFVAVKCPKYllsDTMespwlQEELESFRVEAYAVAALdHHLNICRVLGIAEsISRGPCLICEYMDLGSLEHVLNDQ-DDESNILSSIPFaaricALHVARAMAFLHGKGMIHLDLKPANILATSQHslIFKVSDFGTARVLidvndknrrrR------SKDNRNihsSpmlesfrvgTFGYMAPELLVDDDsdtapyYNAKVDCFSFGICIWNLAANRNIWWKDLasNALAFLHAVkNDGLRPMIEPHFDPILSALMTRCWAHRPQDRPHFISLIPE 342
                  69**************.99999*******876433233211222456899999********99***********9644557******************9.5555555555441111156889***********************98665599*********9877543332221......22222211111111111113468899999998899*******************************963344578888788999999**************************998766 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-06     0.012     126     181 ..     168     231 ..     138     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.5e-06
    PF06293.9 126 avGrliakmhragvnHtdlnahnilldeee........ekakvwliDldkarrrlrakkwkekd 181
                   v+r++a +h  g+ H dl ++nil   ++              liD ++ +rr r k  ++  
  MMETSP0890-20130614|37423_1 168 HVARAMAFLHGKGMIHLDLKPANILATSQHslifkvsdFGTARVLIDVNDKNRRRRSKDNRNIH 231
                  699************************9997787776545566778887777777666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.53s 00:00:01.06 Elapsed: 00:00:00.71
# Mc/sec: 1258.93
//
Query:       MMETSP0890-20130614|37422_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-30  104.3  23.6    8.5e-30  103.9  16.3    1.1  1  PF00487.19 Fatty acid desaturase
    0.00012   21.7   0.0    0.00027   20.5   0.0    1.6  1  PF00173.23 Cytochrome b5-like Heme/Steroid binding domain
     0.0048   16.5   0.1     0.0094   15.5   0.1    1.5  1  PF09860.4  Uncharacterized protein conserved in bacteria (DUF2087)


Domain annotation for each model (and alignments):
>> PF00487.19  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9  16.3   1.9e-33   8.5e-30       8     254 ..     125     377 ..     120     380 .. 0.84

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 1.9e-33
   PF00487.19   8 lalllaalllsilvnlaHealHgalfrsrrlnrvlglllall.lgisslawrrsHlrhHhytgnaekDpdsalr..........rlirlaerrpllklrrllyrlllglllggllfllalerrklrkrrrrkglalllallilalllalaglllllsglgalllyvvp.lalaltvlllvnyleHygletednnaardfyenqlltssnsegswvlnllsgnlnyHieHHlfPgvpwyrLpelhprlreelkehgvryn 254
                   ++++++++ +++++l+He++H++l++  +++r++  +l+ +  g+s   wr++H++hH+  ++ ++D d+ +              + +  + +lkl+  l+  +  +l+ ++++   + r++lr +++r    l   +l  ++++ +++    ls+++a+  y++  +++a+ +++ +  l+H +l+++  n+   + e +  ++ n+ +++++++ +  ln++ieHHlfP++p++r p +++r+r+ +++hg+ y 
  MMETSP0890-20130614|37422_1 125 TGVIMLGIVSGRCGWLMHEGGHYSLTGIIKIDRFIQEFLYGVgCGMSAAWWRNQHNKHHATPQKLQHDVDLDTLplvafhsaiaAKAKGTILKAWLKLQAVLFIPVSCVLVALFWQYYLHPRHALRIKNAR---ELTFITLRHFFIYNFVLS--HLSWPAAIGTYLFYdQIAASYIFTNF-ALSHTHLPVTQSNQFLHWVEYAANHTTNIASNPLVDWWMAYLNFQIEHHLFPSMPQFRHPTVSKRVRQLFEKHGLQYD 377
                  68999*************************************99999999****************9999999999*************************************************999999...345555555555555555..33333333333333033333333333.355999999999999999999999***************************************************997 PP

>> PF00173.23  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.9e-08   0.00027      18      68 ..       4      53 ..       2      57 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.9e-08
                 EECTTEEEETTTTTTTHTSTTHHHHTT---.BHHHHHHHHHHH..HHHHHHHHG CS
   PF00173.23 18 vvirgkVYDvskflkdhpggasailafaGk.DaTeafenashs..eaaekllek 68
                 v i+g+ YDvs+f  +hpgg s  + + G  DaTeaf  ++h   ++a+ +l+ 
  MMETSP0890-20130614|37422_1  4 VLIQGELYDVSDF--KHPGG-SIVKFLTGDgDATEAF-TEFHGrsKKAKAMLKA 53
                 679*********9..8****.8888888855******.8887767999999986 PP

>> PF09860.4  Uncharacterized protein conserved in bacteria (DUF2087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.1e-06    0.0094       5      61 ..      39      94 ..      35     103 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.1e-06
    PF09860.4  5 rwPakrkkklviLeylakrfepgreYsEkevnailkeffeDyallRReLvdyglleR 61
                 ++  + kk +++L+ l +   +++e++ +  n   +e+ +Dya lRReL ++g+++ 
  MMETSP0890-20130614|37422_1 39 EFHGRSKKAKAMLKALPHTQASDEEMKRRAFNGR-EELAKDYAELRRELEEEGFFKP 94
                 566789999999****9999***********998.5666***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.45s 00:00:01.15 Elapsed: 00:00:00.84
# Mc/sec: 1152.53
//
Query:       MMETSP0890-20130614|37427_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.5   2.1        0.2   11.3   0.3    1.9  2  PF14038.1 YqzE-like protein


Domain annotation for each model (and alignments):
>> PF14038.1  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.18   2.4e+03      19      44 ..     135     160 ..     134     166 .. 0.68
   2 ?   11.3   0.3   1.4e-05       0.2       3      37 ..     191     223 ..     189     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.18
    PF14038.1  19 tPkeeRkkkkeerkeekepfssrwFG 44 
                   P+ +R+k  +e+  e + +++  FG
  MMETSP0890-20130614|37427_1 135 IPQAKRRKFGSEKLLEEKQIITPVFG 160
                  57778887767766666666666666 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 1.4e-05
    PF14038.1   3 nDYvKyvTqqvVkyldtPkeeRkkkkeerkeekep 37 
                  +D v+   q  V+y++  +++Rk++k  rk++k p
  MMETSP0890-20130614|37427_1 191 QDIVREFAQIAVTYINYDRQQRKNAK--RKRTKLP 223
                  67888888999**************5..5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       659  (0.0482007); expected 273.4 (0.02)
Passed bias filter:                      512  (0.0374488); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.76
# Mc/sec: 794.58
//
Query:       MMETSP0890-20130614|37433_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       188  (0.0137507); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 208.38
//
Query:       MMETSP0890-20130614|37431_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   21.6   5.9    0.00026   20.5   4.1    1.5  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain
    0.00093   18.6  16.0     0.0022   17.5  11.1    1.5  1  PF13488.1 Glycine zipper
      0.002   17.4  20.3     0.0044   16.3  14.1    1.5  1  PF13441.1 YMGG-like Gly-zipper
  ------ inclusion threshold ------
      0.066   12.3   5.2       0.16   11.0   3.6    1.6  1  PF11981.3 Domain of unknown function (DUF3482)


Domain annotation for each model (and alignments):
>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   4.1   7.6e-08   0.00026      53     104 ..     329     375 ..     308     383 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.6e-08
    PF13436.1  53 aegaavGaavGAaagaaaggagagaaiGAaaGllvGaaaGagagqassykaq 104
                  ++g+++Ga+vGA +ga +g  g ga  GA +G+ vGa  +  +++     +q
  MMETSP0890-20130614|37431_1 329 TTGMIAGATVGAGVGATVGA-GIGAVPGAIIGACVGADESLDNSAM----QQ 375
                  57888888888888888887.6666666666666665555544444....33 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  11.1   6.3e-07    0.0022       2      32 ..     335     364 ..     330     371 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.3e-07
    PF13488.1   2 GaaiGAaaGAaiGaaaggagkGAliGAavGa 32 
                  Ga++GA++GA +Ga++g  + GA+iGA vGa
  MMETSP0890-20130614|37431_1 335 GATVGAGVGATVGAGIGA-VPGAIIGACVGA 364
                  666666666666666663.666666666665 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  14.1   1.3e-06    0.0044       2      36 ..     331     364 ..     328     365 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-06
                  XXXXXXXXXXXXXXXXXXXXXXXX----------- CS
    PF13441.1   2 gavaGAaiGAaaGAaiGaaaGgggkGAaiGAaaGa 36 
                  g +aGA +GA++GA +Ga +G ++ GA+iGA +Ga
  MMETSP0890-20130614|37431_1 331 GMIAGATVGAGVGATVGAGIG-AVPGAIIGACVGA 364
                  668999999999999999999.9999999999998 PP

>> PF11981.3  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.6   4.7e-05      0.16     147     191 ..     327     379 ..     323     399 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.7e-05
    PF11981.3 147 kkgqgaaaGAalGagiDlavg.GltLglgaaiGalaGgl.......wqtakry 191
                  ++++g+ aGA +Gag+ + vg G+    ga+iGa +G+        +q+++++
  MMETSP0890-20130614|37431_1 327 RRTTGMIAGATVGAGVGATVGaGIGAVPGAIIGACVGADesldnsaMQQTQSI 379
                  5678*************999657777778888888888766555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       656  (0.0479813); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.15u 0.39s 00:00:01.54 Elapsed: 00:00:01.18
# Mc/sec: 1628.71
//
Query:       MMETSP0890-20130614|37432_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   15.0   2.4      0.046   13.7   1.6    1.7  1  PF00700.16 Bacterial flagellin C-terminal helical region
       0.32   10.0   5.9       0.47    9.5   4.1    1.1  1  PF13851.1  Growth-arrest specific micro-tubule binding
       0.33   10.5   9.4       0.51    9.9   6.5    1.3  1  PF07926.7  TPR/MLP1/MLP2-like protein
        1.5    8.9   5.3        2.9    8.0   3.7    1.5  1  PF10883.3  Protein of unknown function (DUF2681)
        2.9    7.9   7.5        1.7    8.6   3.0    2.2  2  PF09686.5  Plasmid protein of unknown function (Plasmid_RAQPRD)


Domain annotation for each model (and alignments):
>> PF00700.16  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.6   1.7e-05     0.046       7      56 ..       5      54 ..       2      67 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.7e-05
   PF00700.16  7 aitqltevrsqlGavqnRlesaienlknqsenlkaaisriedvDpaeest 56
                  +++l+++r++l  +q++l+ + ++l+ qs+  ++a+  ++++ +  + +
  MMETSP0890-20130614|37432_1  5 TLKNLEKMRAELAQTQKQLDTTQTTLQEQSQRADTAEAALRKAAFELAHV 54
                 5899**********************************999987766655 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.1   0.00017      0.47      77     140 ..       5      68 ..       2      80 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00017
    PF13851.1  77 klkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykkfeaaiqdvqqk 140
                   lk+ ek +++L++++++l++++  l++ +++ ++ e  ++k   E    ++  +aai+++ q 
  MMETSP0890-20130614|37432_1   5 TLKNLEKMRAELAQTQKQLDTTQTTLQEQSQRADTAEAALRKAAFELAHVREMRRAAIDEALQA 68 
                  6899*******************************************************99885 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.5   0.00019      0.51      53     123 ..       1      72 [.       1      80 [. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00019
    PF07926.7  53 khaetiqeLtklkkelaelqkeaselrkeadsakaelneleekweeeksmLevelselekkiee.lneqNkl 123
                  +h++t ++L+k+++ela++qk++++++++++++++  +++e+   +   +L    +  +  i+e l+++Nkl
  MMETSP0890-20130614|37432_1   1 EHTATLKNLEKMRAELAQTQKQLDTTQTTLQEQSQRADTAEAALRKAAFELAHVREMRRAAIDEaLQAENKL 72 
                  5999*****************************999999998877766666666555555565545666665 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.7    0.0011       2.9      25      85 ..      16      73 ..       4      74 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0011
    PF10883.3 25 lkkaerenekLqkeneqlktekavaetevknakvkqkneentrrlsrddvdeqLqqkgylR 85
                 l++ ++++++ q + + + + + +ae+ ++ a  +    +++r+++r ++de Lq+++ lR
  MMETSP0890-20130614|37432_1 16 LAQTQKQLDTTQTTLQEQSQRADTAEAALRKAAFE---LAHVREMRRAAIDEALQAENKLR 73
                 45666666666677777777777777776666665...457899999*************9 PP

>> PF09686.5  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.0   0.00061       1.7       7      41 ..      10      45 ..       4      57 .. 0.81
   2 ?   -1.3   0.0      0.77   2.1e+03      69      79 ..     136     146 ..     131     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00061
    PF09686.5  7 aaEreelaaalrqldavealleraeaaakqsaks.R 41
                 ++ r+ela++++qld+ + +l+++++ a++++ + R
  MMETSP0890-20130614|37432_1 10 EKMRAELAQTQKQLDTTQTTLQEQSQRADTAEAAlR 45
                 56689***********************98876652 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.77
    PF09686.5  69 AqPrdlselag 79 
                  AqPr ++++ g
  MMETSP0890-20130614|37432_1 136 AQPRRATDVDG 146
                  9***9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1124  (0.0822118); expected 273.4 (0.02)
Passed bias filter:                      733  (0.0536132); expected 273.4 (0.02)
Passed Vit filter:                       123  (0.00899649); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:01.04
# Mc/sec: 677.43
//
Query:       MMETSP0890-20130614|37455_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   13.2   0.1      0.023   12.9   0.0    1.1  1  PF00771.15 FHIPEP family
      0.069   13.1   0.0       0.16   11.9   0.0    1.7  1  PF11669.3  WW domain-binding protein 1
        0.2   11.4   0.0        0.2   11.4   0.0    1.9  2  PF06210.6  Protein of unknown function (DUF1003)


Domain annotation for each model (and alignments):
>> PF00771.15  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.1e-06     0.023     275     372 ..      30     124 ..       7     157 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.1e-06
   PF00771.15 275 glPklvflllaalllllayllkkkkkeeekeeeeeekeeeeeeeeeeesveevlkvdplelelgyklielvdeeqggellerikairkklaeelGvvl 372
                  g P++ f+lla+ll+l  + ++ ++ + +++++++e+e+ e+++++++s+++ l v+   ++ +++ ++  + +q+++ +e ++  +k+++++lG+  
  MMETSP0890-20130614|37455_1  30 G-PSFFFVLLAMLLTLSCTAIRLARLQLKQQNAQQEEEK-EQQDNHNKSIDNPL-VSINIVDGEEEKVDHSTYNQSESKTEPVHDHKKSFSTTLGLEA 124
                  3.9999******999999888888743334333333333.33444444444433.4445556666666666777777889999999999999999865 PP

>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.16      23      69 ..      33      75 ..      24     108 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.6e-05
    PF11669.3 23 yfWlvwvliiilallcayslrrkkrrlqeqqrqseidliayreasns 69
                 +f+++  l+++l+l c    r ++ +l++q+ q+e +    ++ +n+
  MMETSP0890-20130614|37455_1 33 FFFVL--LAMLLTLSCT-AIRLARLQLKQQNAQQEEEKEQ-QDNHNK 75
                 66666..5555665554.4577889999999998887766.555554 PP

>> PF06210.6  Protein of unknown function (DUF1003)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.5e-05       0.2      35      73 ..      35      75 ..      24     112 .. 0.79
   2 ?   -4.5   1.0         3   1.4e+04       9      20 ..     287     298 ..     285     299 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.5e-05
    PF06210.6 35 FilLn..LvlSlqAayaaplillaqnrqadrdrvqaeedre 73
                 F+lL+  L lS++A+ +a l l +qn q+++++ q ++  +
  MMETSP0890-20130614|37455_1 35 FVLLAmlLTLSCTAIRLARLQLKQQNAQQEEEKEQQDNHNK 75
                 7887722568*******************999998887655 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 3
    PF06210.6   9 lftavvilWial 20 
                  + ++++ +Wial
  MMETSP0890-20130614|37455_1 287 ILVVMLGVWIAL 298
                  678899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1212  (0.0886483); expected 273.4 (0.02)
Passed bias filter:                      642  (0.0469573); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.38s 00:00:01.12 Elapsed: 00:00:00.92
# Mc/sec: 784.03
//
Query:       MMETSP0890-20130614|37466_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-23   81.9   0.1      3e-23   81.8   0.0    1.0  1  PF02800.15 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02800.15  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.2e-27     3e-23      11      61 ..       2      53 .]       1      53 [] 0.98

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 2.2e-27
                 TSEEEEEEEEEEEESS-T.........T-S-----S-ESSSSSS-----HHH CS
   PF02800.15 11 kfgiekglmttvhaytadQklvDgps.kdlrraraaaeniiptstgaakavg 61
                 kfgie+glmttvh++ta+Qk+vDgps kd+r++r+a+ niip+stgaakavg
  MMETSP0890-20130614|37466_1  2 KFGIEEGLMTTVHSITATQKTVDGPShKDWRGGRTASGNIIPSSTGAAKAVG 53
                 8*************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        97  (0.00709479); expected 273.4 (0.02)
Passed bias filter:                       93  (0.00680222); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 201.60
//
Query:       MMETSP0890-20130614|37465_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-62  207.9   0.0    6.9e-62  207.6   0.0    1.1  1  PF01583.15 Adenylylsulphate kinase
    5.6e-09   35.9   0.0    8.6e-09   35.3   0.0    1.2  1  PF13671.1  AAA domain
    1.4e-06   28.9   0.1      4e-06   27.4   0.1    1.8  1  PF13207.1  AAA domain
    1.9e-05   24.8   0.2    4.4e-05   23.6   0.1    1.7  1  PF13238.1  AAA domain
    0.00063   18.8   0.0     0.0011   18.0   0.0    1.3  1  PF06414.7  Zeta toxin
     0.0017   17.7   0.0     0.0042   16.4   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
     0.0019   18.4   0.1      0.003   17.8   0.1    1.4  1  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.022   13.8   0.0    1.4  1  PF08433.5  Chromatin associated protein KTI12
       0.03   12.9   0.0      0.039   12.6   0.0    1.1  1  PF03215.10 Rad17 cell cycle checkpoint protein
      0.056   12.5   0.0      0.079   12.0   0.0    1.2  1  PF03193.11 Protein of unknown function, DUF258
      0.068   13.3   0.0      0.093   12.9   0.0    1.2  1  PF13476.1  AAA domain
      0.069   13.1   0.0       0.15   12.0   0.0    1.6  1  PF13401.1  AAA domain
      0.088   12.8   0.0       0.14   12.1   0.0    1.3  1  PF00910.17 RNA helicase
       0.13   11.6   0.0       0.25   10.7   0.0    1.4  1  PF00485.13 Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> PF01583.15  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.0   7.1e-65   6.9e-62       1     155 [.      89     246 ..      89     248 .. 0.96

  Alignments for each domain:
  == domain 1    score: 207.6 bits;  conditional E-value: 7.1e-65
                  ---EEEEE-ETT---HHHHHHHHHHHH.CTS--EEEE---TTT----TT----HHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHS-..-EEEEEEE--HHHHHHH-----HHHHH----SS-----S-----SS-SEEEETTTS CS
   PF01583.15   1 rgvvvwltGlsgsGKstiavalekkLv.ekgikvylLdGdnvRhgLnkdLgfseedReenirrvaevaklladaglivlvsfisPyreeReaarelveea..kfievfvdtplevceerDpkglYkkaraGeikeftGidspYeaPenpelvvkttkk 155
                  +g+++w+tGlsgsGKstia ale++Lv + g++v+ LdGdnvR+gLn+dLgfs +dR+e +rrv+e+a l++  g+i++v+++sPyr++R++ar+ +e++  +f+evf+d+pl v ++rDpkglY+k  +Geik+ftG+d+pYe P +pe+++ +++ 
  MMETSP0890-20130614|37465_1  89 KGITLWMTGLSGSGKSTIARALEEELViKYGKHVQQLDGDNVRTGLNRDLGFSAADRKESVRRVSEIACLFNGGGVITIVTLVSPYRNDRDQARKRHEQQglNFLEVFLDVPLTVVQDRDPKGLYAKVASGEIKDFTGVDAPYEPPLHPEITLPNQEM 246
                  689**********************983568*******************************************************************999***************************************************987765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   8.8e-12   8.6e-09       3     115 ..      94     208 ..      93     222 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 8.8e-12
    PF13671.1   3 llvGlpGsGKstlaerllkklg......yvrlsqdtlrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnls..reerarfvklakrlgvpvrivylevpeetlreRl 115
                  ++ Gl+GsGKst a++l ++l          l+ d++r+ l+ + + s +d    +k+  +++ ++a  +l +g+ vi   t++s  r+ r++ +k  +++g ++  v+l+vp  + ++R 
  MMETSP0890-20130614|37465_1  94 WMTGLSGSGKSTIARALEEELVikygkhVQQLDGDNVRTGLNRDLGFSAAD----RKESVRRVSEIA--CLFNGGGVITIVTLVSpyRNDRDQARKRHEQQGLNFLEVFLDVPLTVVQDRD 208
                  799**************999966665667889999******9877776654....444445556777..899***********99555******************************995 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   4.1e-09     4e-06       5     113 ..      96     187 ..      93     223 .. 0.59

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.1e-09
                  B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-B-----B...--SSGGGB-HHHHHHHH....H..HHHHHHTTS-----------EEEEE----TTGGTTT-SSEEE CS
    PF13207.1   5 tGppGsGKsTlakeLaerlglpvlsldd.llreeglkelddger...eskdadadllaaildglaakkdtlswvidgaleseldlrleeadeiiyldaplpecrkrllkrrle 113
                  tG +GsGKsT+a++L+e+l   v+ ++  + ++ + + ++ g      +  ad ++    + ++a        +++g            + +i+ l+ p+++ r++  kr ++
  MMETSP0890-20130614|37465_1  96 TGLSGSGKSTIARALEEEL---VIKYGKhV-QQLDGDNVRTGLNrdlGFSAADRKESVRRVSEIA-------CLFNG----------GGVITIVTLVSPYRNDRDQARKRHEQ 187
                  9*****************8...34444422.3333333333331000112322232233333331.......23333..........34557777777777777777776444 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   4.5e-08   4.4e-05       4      34 ..      96     126 ..      94     207 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.5e-08
    PF13238.1   4 tGtpGvGKtTlakeLaerlgdvlrdlakeng 34 
                  tG +G+GK+T+a++L+e+l++++ + +++ +
  MMETSP0890-20130614|37465_1  96 TGLSGSGKSTIARALEEELVIKYGKHVQQLD 126
                  8*****************9544444444433 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06    0.0011      17      66 ..      91     143 ..      76     158 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-06
    PF06414.7  17 kavllgGqpGAGKtslaellleela...agnivridaDelrkyhpayrelekk 66 
                  + + + G  G+GK+++a++l+eel    ++ + ++d+D  r+ + +  ++ ++
  MMETSP0890-20130614|37465_1  91 ITLWMTGLSGSGKSTIARALEEELVikyGKHVQQLDGDNVRTGLNRDLGFSAA 143
                  566799******************999999999********987665555554 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.3e-06    0.0042      18      43 ..      85     110 ..      79     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.3e-06
    PF13555.1  18 eidpkgkntlltGasGsGKSTllDAi 43 
                   +d+kg +  +tG sGsGKST+  A+
  MMETSP0890-20130614|37465_1  85 ALDQKGITLWMTGLSGSGKSTIARAL 110
                  67889978889**********98776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1     3e-06     0.003      25      65 ..      92     127 ..      79     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3e-06
    PF13191.1  25 lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn 65 
                   l  tG sG+GKS+++r+     l e+l  ++gk +q l  
  MMETSP0890-20130614|37465_1  92 TLWMTGLSGSGKSTIARA-----LEEELVIKYGKHVQQLDG 127
                  6788**************.....999999999998887765 PP

>> PF08433.5  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.022       6      50 ..      95     143 ..      92     156 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-05
    PF08433.5   6 ltGlPssGKstvakeLakalee.egrsvvvisdeslg..iekds.ykds 50 
                  +tGl  sGKst+a+ L+++l    g++v+ ++ ++++  +++d  +   
  MMETSP0890-20130614|37465_1  95 MTGLSGSGKSTIARALEEELVIkYGKHVQQLDGDNVRtgLNRDLgFSAA 143
                  89*****************997478899999988888533333344444 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     4e-05     0.039      44      76 ..      88     121 ..      79     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4e-05
   PF03215.10  44 kkr.illltGPsGcgKsTtvkvlskelgikliew 76 
                  +k   l +tG sG+gKsT+ + l  el+ik+ ++
  MMETSP0890-20130614|37465_1  88 QKGiTLWMTGLSGSGKSTIARALEEELVIKYGKH 121
                  3333799**********************99765 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.1e-05     0.079      34      65 ..      89     120 ..      66     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.1e-05
                  TTSBEEEE-------HHHHHHH--------S- CS
   PF03193.11  34 kdktsvlvGqSGvGKSsLinallpeldlkvge 65 
                  k+ t  ++G SG GKS++  al++el +k g+
  MMETSP0890-20130614|37465_1  89 KGITLWMTGLSGSGKSTIARALEEELVIKYGK 120
                  45677899****************99887765 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.5e-05     0.093      25      74 ..      96     149 ..      81     206 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.5e-05
    PF13476.1  25 tGpNGsGKTTildAi..claL.ygkt.srlkksrgrgilkddveiekegkkkay 74 
                  tG  GsGK+Ti  A+  +l+  ygk  ++l+ ++ r+ l+ d+ ++    k+++
  MMETSP0890-20130614|37465_1  96 TGLSGSGKSTIARALeeELVIkYGKHvQQLDGDNVRTGLNRDLGFSAADRKESV 149
                  89*************665666688766777766666666666666663333333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.15       8      30 ..      94     116 ..      86     143 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00016
    PF13401.1   8 vvtGesGvGKTtllrrlarqlde 30 
                    tG sG+GK+t +r l ++l +
  MMETSP0890-20130614|37465_1  94 WMTGLSGSGKSTIARALEEELVI 116
                  579***************99865 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.14       1      26 [.      93     118 ..      93     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00015
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl 26 
                  +w++G sg GKSt+a+ L ++l  k+
  MMETSP0890-20130614|37465_1  93 LWMTGLSGSGKSTIARALEEELVIKY 118
                  69***************999998554 PP

>> PF00485.13  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00025      0.25       4      29 ..      95     120 ..      93     153 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00025
   PF00485.13   4 vagsSGaGkttvarklesifgrekvk 29 
                  ++g SG+Gk+t+ar+le+ +  +  k
  MMETSP0890-20130614|37465_1  95 MTGLSGSGKSTIARALEEELVIKYGK 120
                  5999*************988755444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       472  (0.0345231); expected 273.4 (0.02)
Passed bias filter:                      458  (0.0334991); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.65u 0.38s 00:00:01.03 Elapsed: 00:00:00.61
# Mc/sec: 1052.83
//
Query:       MMETSP0890-20130614|37475_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       714  (0.0522235); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 382.64
//
Query:       MMETSP0890-20130614|37478_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-44  147.3   4.4    9.5e-44  147.3   3.0    2.3  2  PF06047.6  Ras-induced vulval development antagonist
  ------ inclusion threshold ------
      0.093   12.1   0.3       0.29   10.5   0.1    1.8  2  PF01840.12 TCL1/MTCP1 family
       0.31    9.3   8.3        3.1    6.0   0.0    2.1  2  PF01237.13 Oxysterol-binding protein
        4.8    5.2  15.7       0.24    9.5   7.2    1.5  2  PF06375.6  Bovine leukaemia virus receptor (BLVR)
          8    5.9  19.3          1    8.8  10.1    1.8  2  PF10278.4  Mediator of RNA pol II transcription subunit 19
        8.3    5.1   8.2        8.1    5.2   3.1    2.0  2  PF08602.5  Mgr1-like, i-AAA protease complex subunit


Domain annotation for each model (and alignments):
>> PF06047.6  Ras-induced vulval development antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   2.6      0.65   1.5e+03      73      92 ..      14      33 ..       6      43 .. 0.49
   2 !  147.3   3.0   4.2e-47   9.5e-44       4     105 .]     104     205 ..     102     205 .. 0.98

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.65
    PF06047.6 73 aeekralallnkeerakkee 92
                  ++kr  ++++k+ +++k +
  MMETSP0890-20130614|37478_1 14 HAKKRKQKKEKKKRKKEKKR 33
                 44444444443333333332 PP

  == domain 2    score: 147.3 bits;  conditional E-value: 4.2e-47
    PF06047.6   4 lsygkallpGeGeaiaayvqkGkriPrrGeiGltseeieefekvGyvmsGsrhkrmeavrlrkenqvysaeekralallnkeerakkeekilsqlkelikkk 105
                  ++yg+ +l+GeG+aia++vqk  r+PrrGe+G ++eeie+ e+vGyvmsGsrh rm+avr+rkenqvysaeekral l n ee++kke++++++++ ++++k
  MMETSP0890-20130614|37478_1 104 VDYGASMLRGEGAAIAQFVQKNMRVPRRGEVGWQGEEIERLESVGYVMSGSRHARMNAVRVRKENQVYSAEEKRALVLANIEEKQKKEAQVVNEFRTMLEQK 205
                  79************************************************************************************************9875 PP

>> PF01840.12  TCL1/MTCP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.72   1.6e+03      50      72 ..      67      89 ..      54      96 .. 0.58
   2 ?   10.5   0.1   0.00013      0.29      18      59 ..     164     206 ..     152     217 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.72
                 .......EEEEE----------C CS
   PF01840.12 50 rietsvtvhlrqmdvllqealss 72
                   et   vh+++ dv     + +
  MMETSP0890-20130614|37478_1 67 DEETKEAVHIQNKDVDSDSDIGP 89
                 45666677777777665554444 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00013
                  EEECTTEEEETT--EEEEEEEE-SSS-E............EEE CS
   PF01840.12  18 vivrkgiYeDEeqrtWvavvvetseslksq.gsrietsvtvhl 59 
                  v +++++Y  Ee+r+ v +++e++++ ++q  + ++t++  +l
  MMETSP0890-20130614|37478_1 164 VRKENQVYSAEEKRALVLANIEEKQKKEAQvVNEFRTMLEQKL 206
                  557899*****************99966431456666655554 PP

>> PF01237.13  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.3    0.0029       6.5     295     325 ..       8      38 ..       2      59 .. 0.84
   2 ?    6.0   0.0    0.0014       3.1     207     288 ..     137     215 ..     106     219 .] 0.67

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0029
                  ----HHHHHHHHHHHHHHHHHHHHHHHH--- CS
   PF01237.13 295 eegdideaeeeKqrlEekQRerrkkreekge 325
                   +  +  a++ Kq+ E+k R+++kkr++k +
  MMETSP0890-20130614|37478_1   8 SSDSYTHAKKRKQKKEKKKRKKEKKRRKKAK 38 
                  5667899999***********9999986654 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0014
                  EEEEESSGGG-SEEEE------EEEEETT.-......GGGEEEEE-TTTS-S------.......-G.......G.GS-TTBH.HHT CS
   PF01237.13 207 kgvvydkkkkklytisGkWseeikikkvkskk....kekekkllwkankkpknsekvygftefaleLNeleeeleaelaptdS.rlr 288
                  +g+ +++ +++ y +sG  + ++++  v++++      +ek+ l  an ++k++++          +Ne+++ le++la ++S rl+
  MMETSP0890-20130614|37478_1 137 QGEEIERLESVGYVMSGSRHARMNAVRVRKENqvysA-EEKRALVLANIEEKQKKEAQ-------VVNEFRTMLEQKLAAVESeRLE 215
                  56666778889999************99977788742.33334444444444444444.......3466666668899999998776 PP

>> PF06375.6  Bovine leukaemia virus receptor (BLVR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.2   0.00011      0.24     193     255 ..      12      75 ..       2      97 .. 0.48
   2 ?   -2.6   0.2      0.46   1.1e+03     548     550 ..     182     184 ..     140     215 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00011
    PF06375.6 193 plvekkskkkkkkekkekekerdkdkkkevekfkdlllalddspaa.aasvleedevslavtvl 255
                      kk k+kk+k+k++kek+r k+ k e e++ +l +a  ++ +     ++ + + ++  +v 
  MMETSP0890-20130614|37478_1  12 YTHAKKRKQKKEKKKRKKEKKRRKKAKFEEEGTPSLGIARASASSVqKKEIMRSGDEETKEAVH 75 
                  3444444555555555555555555566666666666654433332223333332333333333 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.46
    PF06375.6 548 snl 550
                  +n+
  MMETSP0890-20130614|37478_1 182 ANI 184
                  111 PP

>> PF10278.4  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.1   0.00046         1     133     167 ..       5      39 ..       1      47 [. 0.55
   2 ?   -1.5   0.1      0.66   1.5e+03     120     147 ..     162     191 ..     153     213 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00046
    PF10278.4 133 dseteegfekkkkkkkkedDkerkkkkkekkkkkk 167
                   s++ +++ + kk+k+k++ k+rkk+kk +kk+k 
  MMETSP0890-20130614|37478_1   5 SSSSSDSYTHAKKRKQKKEKKKRKKEKKRRKKAKF 39 
                  44455666665555544455666666666666553 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.66
    PF10278.4 120 skvkdalseetlsdsete..egfekkkkkk 147
                   +v+++ + ++++++++      e+k+kk+
  MMETSP0890-20130614|37478_1 162 VRVRKENQVYSAEEKRALvlANIEEKQKKE 191
                  455555555555554433113334444443 PP

>> PF08602.5  Mgr1-like, i-AAA protease complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.1    0.0036       8.1     260     336 ..      13      87 ..       3      91 .. 0.66
   2 ?    1.5   0.1     0.048   1.1e+02     296     329 ..     153     186 ..     140     208 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0036
    PF08602.5 260 nkikaktkkleiyleeneenrkrikklleeelkevnelnkaerldlilkgksqlyneealrsvileedhevdeDidl 336
                  ++ k++++k e  ++ ++e ++r k ++eee   +  +++a++ ++++k+  +   +e +++++  +++ vd D d+
  MMETSP0890-20130614|37478_1  13 THAKKRKQKKE-KKKRKKEKKRRKKAKFEEEGTPSLGIARASASSVQKKEIMR-SGDEETKEAVHIQNKDVDSDSDI 87 
                  44555555555.56777777778888888888888888888888888887777.44566666655555555555553 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.048
    PF08602.5 296 elnkaerldlilkgksqlyneealrsvileedhe 329
                   + +a+ ++++ ++++q+y++e +r  +l +  e
  MMETSP0890-20130614|37478_1 153 GSRHARMNAVRVRKENQVYSAEEKRALVLANIEE 186
                  5668889999999999999999999888764322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1891  (0.138312); expected 273.4 (0.02)
Passed bias filter:                      626  (0.045787); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.73
# Mc/sec: 718.91
//
Query:       MMETSP0890-20130614|37483_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-05   21.6   0.1    6.8e-05   21.6   0.0    1.0  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.14   11.6   0.7        6.4    6.2   0.2    2.3  2  PF06851.6  Protein of unknown function (DUF1247)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     1e-08   6.8e-05     117     179 ..       3      69 ..       1     124 [. 0.73

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1e-08
   PF07690.11 117 keergralgllsagfslGailgpllggllasslgWrav.......Flilailsllaavlvllllpreppe 179
                  + erg a + ++a+ ++Ga+lg +l ++++  +  r+v       F+++ +l++ a+++  + ++re  +
  MMETSP0890-20130614|37483_1   3 PAERGAAAARYYAADAIGAALGFVLTAFVS-GGQVRYVhhlatpsFVLAIALAFHAILV--AIFWRESAQ 69 
                  45*************************999.4445666333333377777777776665..444444333 PP

>> PF06851.6  Protein of unknown function (DUF1247)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0064        44      80     123 ..      37      80 ..      26      86 .. 0.88
   2 ?    6.2   0.2   0.00094       6.4      29      52 ..     129     152 ..      94     158 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0064
    PF06851.6  80 eyveflnsemGiisfvelyysylsveawkleakivlkdLtgfes 123
                   yv++l +   ++++   ++  l + +w+ +a++ + + t+ +s
  MMETSP0890-20130614|37483_1  37 RYVHHLATPSFVLAIALAFHAILVAIFWRESAQQRIMNNTNQNS 80 
                  699999999999998888999999999******99999998876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00094
    PF06851.6  29 relsdetrdyLnvLqteklfkCrl 52 
                  r+ s+  rdy n  q+e+++kCr 
  MMETSP0890-20130614|37483_1 129 RTTSSPYRDYPNNSQNEQVSKCRF 152
                  34567779**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       716  (0.0523698); expected 273.4 (0.02)
Passed bias filter:                      547  (0.0400088); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 614.55
//
Query:       MMETSP0890-20130614|37489_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-79  265.8   0.0    1.9e-79  265.4   0.0    1.1  1  PF05683.7 Fumarase C-terminus
    1.3e-38  132.4   0.0    1.7e-38  132.1   0.0    1.1  1  PF05681.9 Fumarate hydratase (Fumerase)
  ------ inclusion threshold ------
      0.081   12.5   0.2       0.19   11.3   0.2    1.6  1  PF02740.9 Colipase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF05683.7  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.4   0.0   4.2e-83   1.9e-79       1     203 [.     144     355 ..     144     358 .] 0.95

  Alignments for each domain:
  == domain 1    score: 265.4 bits;  conditional E-value: 4.2e-83
    PF05683.7   1 Gsileklekeklkelpevtlealeev......rrvdldkplte..eelselkvgdtlllsGklltgRDaaHkrlveeldkgeelPvdlkgrviYyvGPvkevedeavgsaGPTTatRmdkytekllektgllvmigKgergekvleaikkhkavyLgaiGG.aAilvakaikkvevvafeelGmEAiyelevedfpvvvavdskGnslhkev 203
                  G++le+le+++ k+lpe + ++++++        vdl+ +++e  ++ls+l+v+++l l+G+++++RD+aH++++e+ld+ge+lP+++++++iYy+GP+k+++++a+gs+GPTTa+Rmd+y++ ++++ g++++++Kg+r+++v++a+k+++++yLg+iGG aAil++++ik+v+v++++elGmEA+++++v dfp++++vd+kGn++++++
  MMETSP0890-20130614|37489_1 144 GVFLEQLENDPSKYLPEPKFDQDKTTvsssseESVDLNISMDEirAQLSALPVSTRLKLTGTIIVARDIAHAKIKERLDRGEQLPQYFRDHIIYYAGPAKTPDGYASGSFGPTTAGRMDSYVDPFMAAGGSFITLAKGNRSKQVTKACKEYGGFYLGSIGGpAAILAQNNIKNVQVLEYPELGMEAVWKIDVVDFPAFIVVDDKGNDFFAKW 355
                  899**************98887733334444478********999********************************************************************************************************************************************************************997 PP

>> PF05681.9  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   3.7e-42   1.7e-38     142     271 .]       3     140 ..       1     140 [. 0.94

  Alignments for each domain:
  == domain 1    score: 132.1 bits;  conditional E-value: 3.7e-42
    PF05681.9 142 nkskl.....amlnpseglegvkkfvletvkeagakaCpPlvvgvgiGgtsekaallakk.allrpldernpd........prlaeleeellekinklgiGaqGlGGkttvldvkierlprhaAslpVavnvsCsadRrakvkl 271
                  nk++l     a+lnp+    ++ +f  e++k++g++aCpP++++++iGg s++++l+++k a++++ld   p+        +r+ e+e+++l+  +klgiGaq +GGk++++dv+++rlprh+As+pV+++vsCsadR++  k+
  MMETSP0890-20130614|37489_1   3 NKTFLyqqtkALLNPD----SLLHFAQEKIKTLGTAACPPYHLALVIGGLSAEMTLKTVKlASTKYLDGL-PTsgnehgraFRDLEWEAKILQLSQKLGIGAQ-FGGKYFCHDVRVIRLPRHGASCPVGIGVSCSADRQILGKI 140
                  6666666666889999....8************************************************9.6669999*************************.***********************************98775 PP

>> PF02740.9  Colipase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.2e-05      0.19      17      36 ..     122     141 ..     120     145 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.2e-05
    PF02740.9  17 CPCERGLtCegDktivGsit 36 
                  CP   G+ C +D+ i+G it
  MMETSP0890-20130614|37489_1 122 CPVGIGVSCSADRQILGKIT 141
                  *******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       240  (0.0175541); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.40s 00:00:01.04 Elapsed: 00:00:00.65
# Mc/sec: 1319.84
//
Query:       MMETSP0890-20130614|37495_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-07   29.1   0.8       0.44   10.0   0.4    5.0  4  PF00132.19 Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> PF00132.19  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.4   3.2e-05      0.44      20      35 ..     177     192 ..     157     193 .. 0.67
   2 !    9.1   0.0   6.1e-05      0.83       8      34 ..     320     346 ..     318     353 .. 0.60
   3 ?   -0.1   0.0     0.051   6.9e+02       8      30 ..     542     552 ..     536     555 .. 0.43
   4 !    2.5   0.0    0.0072        99      11      32 ..     586     607 ..     576     608 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.2e-05
                  EBE-TTEEE-TTEEEE CS
   PF00132.19  20 viIGdnviIgagvvig 35 
                  + IGd+v+ g+gv+i 
  MMETSP0890-20130614|37495_1 177 ISIGDDVVFGHGVTIE 192
                  46***********995 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 6.1e-05
                  EEE-TTEEEESSEBE-TTEEE-TTEEE CS
   PF00132.19   8 vlIgpnvvigggviIGdnviIgagvvi 34 
                  ++I + +++++++++ ++v++++ + +
  MMETSP0890-20130614|37495_1 320 CVIENQAQVLDHCHLEPGVHVREKALL 346
                  556666666666666666666555544 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.051
                  EEE-TTEEEESSEBE-TTEEE-T CS
   PF00132.19   8 vlIgpnvvigggviIGdnviIga 30 
                  +++g ++vi             +
  MMETSP0890-20130614|37495_1 542 ATVGFHAVIQ------------P 552
                  2333333333............3 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.0072
                  -TTEEEESSEBE-TTEEE-TTE CS
   PF00132.19  11 gpnvvigggviIGdnviIgagv 32 
                    n+v++++  + +++i++a++
  MMETSP0890-20130614|37495_1 586 EQNAVLLENSLLPKGCIVQANT 607
                  4444444444444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       443  (0.032402); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:01.28
# Mc/sec: 1228.13
//
Query:       MMETSP0890-20130614|37508_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        5.4    6.5   9.5        1.3    8.5   4.1    1.7  2  PF03962.10 Mnd1 family


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.1   9.4e-05       1.3      63     132 ..      28      98 ..      22     116 .. 0.85
   2 ?   -2.5   0.0      0.23   3.1e+03     110     123 ..     215     228 ..     187     239 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 9.4e-05
   PF03962.10  63 akkklkteleklkkeleelkqrikelqaeiekekkkreeteeree.lleelkeleeelkklkkeleklakl 132
                  +  +l +++ +l++ele  +++ ++l +++e e++ r e+e+  + +++  k leee+  l++e+++++k 
  MMETSP0890-20130614|37508_1  28 EIDQLVQTVVELQAELEARSRDAASLMQALEYEQAARVEAENSLKlKIQASKILEEENILLREEIQAYQKR 98 
                  6678889999******************************99999678888999************88764 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.23
   PF03962.10 110 eelkeleeelkklk 123
                  ++ k++++ ++k+k
  MMETSP0890-20130614|37508_1 215 KKGKKVKTSTTKKK 228
                  22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       883  (0.0645846); expected 273.4 (0.02)
Passed bias filter:                      391  (0.0285986); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:02.41
# Mc/sec: 242.62
//
Query:       MMETSP0890-20130614|37528_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-29  101.5   0.0    4.1e-29  101.3   0.0    1.0  1  PF05891.7 AdoMet dependent proline di-methyltransferase
      6e-05   23.4   0.0    8.4e-05   23.0   0.0    1.2  1  PF12847.2 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF05891.7  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   6.1e-33   4.1e-29       3     132 ..      41     166 .]      39     166 .] 0.92

  Alignments for each domain:
  == domain 1    score: 101.3 bits;  conditional E-value: 6.1e-33
    PF05891.7   3 eevyekaiaYWe.sveadvdGvLGGygavskiDvkgsrkflkklkkeslpgkrevkvaldcGaGiGrvtknlLlkl.lskvDlvepvekflekakeelaeekkkvgkvyvvglqeftPeegrYdliWiqWcv 132
                  +++y +a++YW+ ++  ++dGvLGG++++++ D+k sr+ + kl+++      + +va+d+ aGiGr+tk+lLl+l  ++vD++e  + +l++a e++    ++ +++++ ++qe+ P+ ++Yd+iW+qWc+
  MMETSP0890-20130614|37528_1  41 DDWYIEAKSYWDnEAPISMDGVLGGFAKLDAPDIKMSRNLMLKLRTD-----WTGSVAADIAAGIGRITKSLLLPLgCARVDIIEQSAGLLSAAPEYVNA-PDEKCRFFCFAMQEWQPKFKEYDIIWVQWCI 166
                  589********7257789*************************9998.....45789******************94599****************9999.677799************************8 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   8.4e-05       4      77 ..      91     163 ..      89     166 .] 0.88

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-08
    PF12847.2   4 ri.lDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsller...fDavllk 77 
                  ++  D+++G G+++  l+   + a+v+ ++ s++ l+ a e +  ++ +e++++ + ++   ++++++   +D++ + 
  MMETSP0890-20130614|37528_1  91 SVaADIAAGIGRITKSLLLPLGCARVDIIEQSAGLLSAAPEYV--NAPDEKCRFFCFAM---QEWQPKfkeYDIIWVQ 163
                  5559***************889999******************..99*********999...6666666669999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.62
# Mc/sec: 641.61
//
Query:       MMETSP0890-20130614|37535_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   46.6   5.2    4.8e-12   45.6   3.6    1.5  1  PF10253.4 Mitotic checkpoint protein PRCC_Cterm


Domain annotation for each model (and alignments):
>> PF10253.4  Mitotic checkpoint protein PRCC_Cterm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   3.6   3.5e-16   4.8e-12       1      41 []     250     290 .]     250     290 .] 0.99

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 3.5e-16
    PF10253.4   1 arrKHQiTyLaheAkereeeLeerwaanrqtrrqtqsKYGF 41 
                  +rr+HQi++La +A ere++L+er  +  +t++qt +KYG+
  MMETSP0890-20130614|37535_1 250 QRRRHQINALAVTAAERELQLLERNNHSLKTKAQTHAKYGW 290
                  8**************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 1007.16
//
Query:       MMETSP0890-20130614|37549_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   13.6   0.1      0.039   13.4   0.0    1.2  1  PF00790.14 VHS domain


Domain annotation for each model (and alignments):
>> PF00790.14  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.9e-06     0.039      29      73 ..      17      65 ..       2      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.9e-06
                 HHHHHHHCS.----HCHHH...HHHHHHT-SSHHHHHHHHHHHHHHHHH CS
   PF00790.14 29 eicDlinek.eagpkeavr...likkkinsknphvallaLklldalvkN 73
                  i++ i e+  + +k  ++   +i+kki+ ++++val  L++l + v+N
  MMETSP0890-20130614|37549_1 17 AISENILESnATAGKTLMQhyiSIMKKIKTDQEEVALAGLRALGSQVSN 65
                 57777777755555555543338********************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      518  (0.0378877); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.35s 00:00:00.67 Elapsed: 00:00:00.92
# Mc/sec: 184.94
//
Query:       MMETSP0890-20130614|37553_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.3   0.3    1.6e-22   79.9   0.2    1.2  1  PF00373.13 FERM central domain
    0.00012   21.5   0.0     0.0002   20.7   0.0    1.4  1  PF02174.12 PTB domain (IRS-1 type)
    0.00038   20.5   0.0    0.00063   19.8   0.0    1.3  1  PF09380.5  FERM C-terminal PH-like domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.025   14.3   0.0    1.5  1  PF08416.8  Phosphotyrosine-binding domain


Domain annotation for each model (and alignments):
>> PF00373.13  FERM central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.2   4.6e-26   1.6e-22       6     126 .]      13     124 ..       9     124 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 4.6e-26
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00373.13   6 ydevrinllYeQakwdlleerldcteeeallLAALqlqiekgdseeqeaasssdlekeeeeaeseqllpvsprllkkekskqleqrileahknvrglslaeaklkylqaaqslpdyGvslF 126
                  +de +++l+Y Qak+d+++ r++c++++a+ LAALq+q e+gd++ +++   ++l  ++ ++     l+ ++ +  ++  ++le+++l+ +++++g s++ea+l+yl  ++s++ yG+++F
  MMETSP0890-20130614|37553_1  13 NDEPAVELMYVQAKHDVVDARYPCSDQDAVTLAALQIQEEFGDCP-ESDC--QYLAGNLGKY-----LS-EKIISDRNDDSALEAQLLKLYAKLQGYSQQEARLSYLDYVKSWKIYGSAYF 124
                  688899***************************************.4444..2334445454.....55.455557778888**************************************9 PP

>> PF02174.12  PTB domain (IRS-1 type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     6e-08    0.0002      13      97 ..     127     209 ..     115     212 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 6e-08
   PF02174.12  13 eaaerkglkgsylleltseallLkkeekkkelvewpltslRryGrdkslfsfEaGRrcesGeGeftfetkdaeeifelvqaaika 97 
                  e++++ +   +++l ++++ +l  +  +k+ l e p+  +  +G++ + f +  G   +    +  f+t+ ++e+  +v+a+++ 
  MMETSP0890-20130614|37553_1 127 EPKQNRDFPNQVVLAINAKGILVVDPDTKSYLQEYPYSQVVTWGHSPNSFVVVTGNAVKQT--KVYFKTEFGKEMNTMVRAYVEV 209
                  67888899999********************************************988765..799**************99875 PP

>> PF09380.5  FERM C-terminal PH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.8e-07   0.00063       6      65 ..     137     196 ..     131     209 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.8e-07
    PF09380.5   6 dllLGvdakGlliyeknsklsnksFpWseirklsfkekkftiklrdekkkdvlkFyssql 65 
                  +++L+++akG+l++++++k   +++p s++    ++ + f++ + +  k++++ F+++  
  MMETSP0890-20130614|37553_1 137 QVVLAINAKGILVVDPDTKSYLQEYPYSQVVTWGHSPNSFVVVTGNAVKQTKVYFKTEFG 196
                  789****************99**********************99999999999998755 PP

>> PF08416.8  Phosphotyrosine-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.4e-06     0.025      35      78 ..     131     174 ..     125     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.4e-06
    PF08416.8  35 gkvwaqevllkVsaqgvtLtDnerKeelesyplnsvkkckavle 78 
                   +  + +v+l ++a+g+  +D+++K+ l++yp ++v      ++
  MMETSP0890-20130614|37553_1 131 NRDFPNQVVLAINAKGILVVDPDTKSYLQEYPYSQVVTWGHSPN 174
                  5667889**************************99987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.37s 00:00:00.86 Elapsed: 00:00:01.26
# Mc/sec: 418.41
//
Query:       MMETSP0890-20130614|37545_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-25   89.9   0.0    2.1e-25   89.4   0.0    1.2  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.6e-29   2.1e-25       1     155 [.      32     192 ..      32     195 .. 0.94

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 1.6e-29
                  EEEEEE---BHCCCTTBGGGTCC-.-B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHHHCC.CCEEEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT..SS.CHHHHHHHHHHHHHHHHH....HCTTTSEEEEEE-TTHH CS
   PF00300.17   1 rlylvRHGeselnkegrlqgwsdv.pLtekGreqarelgkkLkradlqidavytSplkRaiqTaeille.eldipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp..egesladvyeRvapfleelie....akdkgenvlivsHggvl 155
                  rlyl+RHG++++n++g +qg   + pL+ +G  qa++++ +L+  +l+   + +S l+R++qTa+ ++  + +++ i+ ++Lre++fg++eg++    +e + + + +w ++++e+r p  +ges +d+ +R++++l++l       +++ + + +++Hg + 
  MMETSP0890-20130614|37545_1  32 RLYLCRHGQTDYNAQGLIQGSGIDrPLSSTGLVQAEAVASALR--ELPLYLIGSSSLTRSVQTADAVARyHPNVNRIEHKGLREMSFGDLEGKKVVANSEVYTQVQTAWANGDYELRWPgsNGESPNDLLKRAHSALKDLGIldlnTDHGIRHIALIAHGRFN 192
                  69*******************9977******************..*********************887466799999*****************************************999******************98999999999999******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      271  (0.0198215); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.19s 00:00:00.74 Elapsed: 00:00:00.83
# Mc/sec: 863.27
//
Query:       MMETSP0890-20130614|37555_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-79  263.2   1.3    1.1e-78  262.9   0.9    1.0  1  PF00574.18 Clp protease


Domain annotation for each model (and alignments):
>> PF00574.18  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.9   0.9   8.2e-83   1.1e-78       3     180 ..      44     221 ..      41     223 .. 0.98

  Alignments for each domain:
  == domain 1    score: 262.9 bits;  conditional E-value: 8.2e-83
   PF00574.18   3 geravdiysrllkeriiflgeevddevankivaqLlfLesedsdkdislyinSpGGsvtaglaIydtlkfikpdvsticlGlaaSmaslilaaGekgkRialpnarimihqPlggaqgqasdieieaeelekikerlneiyaertgqseekiekdldrdtflsaeeAkeyGliDevle 180
                  ++ ++diy+rl++eriiflg+e+dde+an+i++ +l+L+se+ +k+i+lyin+pGGsv aglaIydt+++ik++v+ti +GlaaSmas++l++G+ g+R+alp++r+mihqP+ggaqgqa+di+ ea ++ +ik++l+++ya +tgq++e+i +dldrd+f+sa+eA eyGliD+v++
  MMETSP0890-20130614|37555_1  44 QADWIDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDSESTTKPIYLYINCPGGSVIAGLAIYDTMNHIKSKVVTINIGLAASMASFLLCGGQRGMRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQIIRIKDNLVKAYAMMTGQTQETIIRDLDRDNFMSAAEAAEYGLIDKVID 221
                  458*****************************************************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:01.08
# Mc/sec: 499.24
//
Query:       MMETSP0890-20130614|37572_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 285.72
//
Query:       MMETSP0890-20130614|37563_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.079   12.9   0.0      0.079   12.9   0.0    2.7  2  PF01141.13 Gag polyprotein, inner coat protein p12
        0.2   11.9  15.9          1    9.6   2.5    3.7  3  PF09177.6  Syntaxin 6, N-terminal
       0.59   10.7  11.9        5.9    7.5   0.4    4.3  4  PF07303.8  Occludin homology domain
        5.2    6.1  19.0          1    8.4   1.8    3.5  3  PF13851.1  Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> PF01141.13  Gag polyprotein, inner coat protein p12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05     0.079      13      78 ..     196     261 ..     184     266 .. 0.84
   2 ?   -0.8   2.7      0.46   1.6e+03      40      83 ..     470     511 ..     465     514 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
   PF01141.13  13 kpqVLpdsggPLiDLLtedp.PPYrepepsppageedeeeaattsevpepsPmasrlrgrrepPaad 78 
                   + VL+ +   L+DLL e    P+ +  ++ p+ ++d + aa  +e+ +   +a+rl   r   a d
  MMETSP0890-20130614|37563_1 196 ETTVLSKDDRILLDLLEEKShNPFIGS-SADPQADRDWSRAACGDETFDSIAIATRLAAERAAAACD 261
                  678**************9752799998.7888888**********************9999877666 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.46
   PF01141.13  40 psppageedeeeaattsevpepsPmasrlrgrrepPaadsttSq 83 
                  ps+ +++++++e + ++ +++ s + s   +++e+P++ s+ S 
  MMETSP0890-20130614|37563_1 470 PSSDNNKNNNHERKNKDALSKKSNVRSP--QKQEQPPPSSSSSL 511
                  3444444555566666666766666554..56666666666664 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5    0.0003         1       6      83 ..      53     132 ..      51     149 .. 0.78
   2 ?    2.0   0.2     0.074   2.5e+02      13      60 ..     287     332 ..     276     337 .. 0.66
   3 ?    7.4   0.3    0.0015       5.2      12      59 ..     408     456 ..     394     489 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0003
    PF09177.6   6 vkeevqksidkleslyrs...weelrsdstsskelkeltkeLenalesiewdledLeeavsvveknpekfglseeeisrRk 83 
                  v+e ++k+++kl +++++   +e+++++s++  + ++  +e+ ++le +++ l+ Le++ +++++   +f++++ e++rR 
  MMETSP0890-20130614|37563_1  53 VRERLRKAAAKLADTVQQnhdHEHIQRTSSQGGSDNKSADEIARSLELAAQRLSTLEDEAAAANARADRFQATA-ELERRS 132
                  56666676666655554411166677777788899999********************************9986.566664 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.074
    PF09177.6  13 sidkleslyrsweelrsdstsskelkeltkeLenalesiewdledLee 60 
                  ++++l+s+ +s  +  +     +e+   ++e+++ ++ +++ +  L +
  MMETSP0890-20130614|37563_1 287 ELKRLRSTSDSRLAAATAEA--QEARMVQREINARYDRLRKNYASLTR 332
                  56777777777666666655..67777777777777777766665554 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0015
    PF09177.6  12 ksidkleslyrsweelrsdst.sskelkeltkeLenalesiewdledLe 59 
                  +++d++++  + +++l+ +++ +s+ +k l+++L ++++s+e ++  L+
  MMETSP0890-20130614|37563_1 408 AKLDSCRQRQQMLQKLLDEQPeQSTHFKPLKSKLDSVISSLEAQITNLD 456
                  5677777777777777777667789********************9986 PP

>> PF07303.8  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.66   2.3e+03      34      60 ..      53      79 ..      51      97 .. 0.85
   2 ?    0.2   0.1      0.34   1.2e+03      26      61 ..      93     128 ..      74     147 .. 0.78
   3 ?    7.5   0.4    0.0017       5.9      19      82 ..     272     337 ..     258     339 .. 0.77
   4 ?    7.3   0.1     0.002       6.7      17      59 ..     396     438 ..     375     452 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.66
    PF07303.8 34 iskklaeldaelkslkegseeykevak 60
                 ++++l++  a+l ++ +++++++++++
  MMETSP0890-20130614|37563_1 53 VRERLRKAAAKLADTVQQNHDHEHIQR 79
                 778999999999999999999999885 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.34
    PF07303.8  26 eLqaeldeiskklaeldaelkslkegseeykevaki 61 
                  e+ + l+ ++++l++l++e   ++ + ++++  a++
  MMETSP0890-20130614|37563_1  93 EIARSLELAAQRLSTLEDEAAAANARADRFQATAEL 128
                  667788889999999999999999988888887744 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0017
    PF07303.8  19 sdykeYkeLqaeldeiskklae.ldaelkslkegseeykeva.kileeyeklkkrspdykekkerc 82 
                  +d ++Y++ ++ l +  k+l++  d++l  ++ + +e + v+ +i   y++l+k+ ++ ++  ++c
  MMETSP0890-20130614|37563_1 272 KDKARYQHEKRVLVAELKRLRStSDSRLAAATAEAQEARMVQrEINARYDRLRKNYASLTRRLAKC 337
                  566666666666655566665515778999999*********99*********9988877776666 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.002
    PF07303.8  17 FdsdykeYkeLqaeldeiskklaeldaelkslkegseeykeva 59 
                   +++++   +L a+ld+ +++ + l++ l++ +e+s+++k ++
  MMETSP0890-20130614|37563_1 396 IQQNLAYRSKLVAKLDSCRQRQQMLQKLLDEQPEQSTHFKPLK 438
                  5666666679***************************999877 PP

>> PF13851.1  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.6     0.053   1.8e+02      78     129 ..      67     118 ..      51     134 .. 0.71
   2 ?    8.4   1.8   0.00029         1      39     107 ..     263     332 ..     257     337 .. 0.89
   3 ?    6.3   0.7    0.0013       4.5     144     201 .]     398     455 ..     391     456 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.053
    PF13851.1  78 lkqyekdkqsLknlkaklkelekelknlkwesevleqrfekverErdelykk 129
                  + q+++d +  +++ ++  + +k  +++    e   qr++++e+E  +  ++
  MMETSP0890-20130614|37563_1  67 TVQQNHDHEHIQRTSSQGGSDNKSADEIARSLELAAQRLSTLEDEAAAANAR 118
                  4556777778888888888888888888888888888888888887766655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00029
    PF13851.1  39 lkkkeekneklmaeikkenkrlkepLkkaeeev.eeLkkklkqyekdkqsLknlkaklkelekelknlkw 107
                   +++  k ek+ a ++ e++ l+++Lk++++     L  +++++++ ++  +++ a++++l+k++ +l+ 
  MMETSP0890-20130614|37563_1 263 ARANIVKLEKDKARYQHEKRVLVAELKRLRSTSdSRLAAATAEAQEARMVQREINARYDRLRKNYASLTR 332
                  678899999********************9875268***************************9999875 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0013
    PF13851.1 144 knllLekKlealneelekkeaqLeevlaaanldpaaleavsekledvleeKnqeIkdL 201
                  +nl +  Kl a  ++  ++++ L+++l++   + +  + ++ kl++v+++  ++I +L
  MMETSP0890-20130614|37563_1 398 QNLAYRSKLVAKLDSCRQRQQMLQKLLDEQPEQSTHFKPLKSKLDSVISSLEAQITNL 455
                  5666777777777777777777777777777666777777777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1389  (0.101594); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.99
# Mc/sec: 1265.95
//
Query:       MMETSP0890-20130614|37577_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 228.40
//
Query:       MMETSP0890-20130614|37581_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-20   70.9   0.0    7.4e-20   70.6   0.0    1.1  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   5.4e-24   7.4e-20       4      93 ..      56     150 ..      53     151 .. 0.93

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 5.4e-24
                  ---CT-EEEEEEEEEE.---EEEETTT.TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTT....S.TT-EEEEEEEE CS
   PF00254.23   4 kakegdtVtvhyegkledgtvfdssys.rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggk....ippnatlvfevel 93 
                  ++++g++  v+y+g l  g vfds+ s   kp+ fk+G++qvi g+e+ + +mk Ge+++  ip elaYgekg+   +    ippn +l + v l
  MMETSP0890-20130614|37581_1  56 TPTQGSFCIVDYTGFLPSGAVFDSTESkGRKPLAFKLGEKQVIVGIEQLVSQMKPGEEVQALIPAELAYGEKGVCTEDkdclIPPNTDLKYFVRL 150
                  5899*********************66799*****************************************99955558999********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 548.73
//
Query:       MMETSP0890-20130614|37579_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-06   27.0   0.0    7.1e-06   25.3   0.0    1.7  1  PF02666.10 Phosphatidylserine decarboxylase
  ------ inclusion threshold ------
      0.046   13.1   0.1       0.14   11.6   0.1    1.8  1  PF00358.15 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
        0.1   12.5   0.0       0.21   11.5   0.0    1.5  1  PF14389.1  Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> PF02666.10  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.6e-09   7.1e-06      21     187 ..     231     415 ..     225     429 .. 0.66

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.6e-09
   PF02666.10  21 dvivsPaDgrvlqfgeikene.......vvqvKg..ityslrellgaasseakpfkngyyvviyLsp.gdyHrfhaPvdgkveerrhiaGely...........svnpsllrklpglftlneRvvllie......wkegkvavvpvGatnvgsivlnfdkkegdplekGeeiGyfql.GStvvlv.feakkttnst 187
                   v ++P+Dg + +++++ ++        +        +++l++llg++   + + ++  +++++L   ++ H f +Pv+gkv+++ ++ +              +      ++  g  +   + v++i+      ++ gkva++  G +  + i+l++  ++g++++kG+++G f + G    l+ f++++ ++++
  MMETSP0890-20130614|37579_1 231 RVPTAPCDGILDAVHRFVSGDslapkldL---PDvlCQVELSKLLGDSFAHKFQQNDARLLHFHLPLtTNNHQFQSPVSGKVVSCSTTVEIERlditirdgdfaT---VPNSN-SGFPFPRAQAVIIIDtqdaveNNVGKVALIMLGLF--QPIHLYI--QNGQTIKKGDKLGDFTFpGANHLLLlFQEQAHLKID 415
                  46678888888888776555557775542...221246789999999544444489999999999862689*************887765443356666663332...33332.34444455555555544443345777999999876..5899**9..57****************998765515555544555 PP

>> PF00358.15  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.1e-05      0.14       2     108 ..     297     396 ..     296     401 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.1e-05
   PF00358.15   2 eeeelvsPitGevveleeveDevFaekvlGdG.iAikPsegkvvaPvdgtivkifktkHaiglesekGveiliHvGidtvkleGegFeslveegdkvkaGdkllefdl 108
                  +++++ sP++G+vv+ ++  +    + ++ dG +A +P++++ +   +++ v i++t+ a+  e++ G + li +G+       +  + ++++g+++k+Gdkl +f  
  MMETSP0890-20130614|37579_1 297 NNHQFQSPVSGKVVSCSTTVEIERLDITIRDGdFATVPNSNSGFPFPRAQAVIIIDTQDAV--ENNVGKVALIMLGLF------QPIHLYIQNGQTIKKGDKLGDFTF 396
                  577899********9986555555555566655********998888899999*****995..899**********94......566779*************99975 PP

>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.7e-05      0.21      17      47 ..      48      78 ..      45      99 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.7e-05
    PF14389.1 17 VkkLqkqLqdeekvreaLekalgrsssslle 47
                 V++L k+L d+ ++re+Le+ l+r++ + + 
  MMETSP0890-20130614|37579_1 48 VAELGKKLADDVTMREMLESSLRRAKAAAHH 78
                 899********************96655433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.36s 00:00:01.18 Elapsed: 00:00:00.72
# Mc/sec: 1574.27
//
Query:       MMETSP0890-20130614|37585_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   11.7   1.5       0.17   11.4   0.7    1.5  2  PF02996.12 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   1.2e-05      0.17      75     107 ..      20      52 ..      15      64 .. 0.85
   2 ?   -0.0   0.1     0.042   5.8e+02      88     111 ..      53      76 ..      45      77 .] 0.54

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH- CS
   PF02996.12  75 leeAiellkkkleelekqlekleeeleklkdqi 107
                  +e A+++l+++++e++ +  k+ ++le   +++
  MMETSP0890-20130614|37585_1  20 SERATKILNQRVAEMDATTRKMRNDLERREAEA 52 
                  689***********************9866665 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.042
                  HHHHHHHHH---HHHHHHH---HH CS
   PF02996.12  88 elekqlekleeeleklkdqittle 111
                   +++q+ + + +++ + + +tt++
  MMETSP0890-20130614|37585_1  53 RAQQQSGSSTTSIRRKNAAATTAQ 76 
                  344555556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1448  (0.10591); expected 273.4 (0.02)
Passed bias filter:                      801  (0.0585869); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.47s 00:00:00.88 Elapsed: 00:00:00.59
# Mc/sec: 312.74
//
Query:       MMETSP0890-20130614|37600_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-06   29.0   0.4      2e-06   28.4   0.1    1.4  2  PF13578.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.078   11.9   0.0      0.095   11.6   0.0    1.3  1  PF01596.12 O-methyltransferase


Domain annotation for each model (and alignments):
>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1     3e-10     2e-06       1     106 []      23     126 ..      23     126 .. 0.73
   2 ?   -3.7   0.0         2   1.4e+04      67      77 ..     144     154 ..     130     158 .. 0.58

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3e-10
    PF13578.1   1 vEiGvysGvstlvllqalkrngagrlysvdpdpgaeeaaalaee......agladrvrllkgdseealasladgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                  vE+G++ Gv++l+l  a   +g  ++ ++d  +   +a+a+++        +l  +v+  + + + ++++   +s Dl++iD   +a++ +++ e + prl+ ++v+l++D+
  MMETSP0890-20130614|37600_1  23 VEFGTFGGVTSLYLGLASALRGG-KFDTFDIID--VRADAVLRAwlpnmhFHLG-NVSECEPKQFRVIEDAI-QSADLVLID---HADRLKFATEVVIPRLKLDAVLLVHDF 126
                  8**************99999985.677777655..3555555543333633333.44444444455666666.79*******...48999999******************5 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2
    PF13578.1  67 dgsiDllfiDg 77 
                   +++  +++D 
  MMETSP0890-20130614|37600_1 144 LQPFHRVHVDL 154
                  34555566664 PP

>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05     0.095      36      78 ..       9      52 ..       4     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
   PF01596.12 36 fLsllvklvgakkvleiGvftGyslLatalalP.edGkiiaidi 78
                 +++++++  gak+v+e G+f G   L   la    +Gk  + di
  MMETSP0890-20130614|37600_1  9 LMDFVLSRKGAKNVVEFGTFGGVTSLYLGLASAlRGGKFDTFDI 52
                 567899999*************9998776553215777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.40s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 602.83
//
Query:       MMETSP0890-20130614|37599_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 556.08
//
Query:       MMETSP0890-20130614|37606_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       825  (0.0603423); expected 273.4 (0.02)
Passed bias filter:                      676  (0.0494441); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.46s 00:00:00.84 Elapsed: 00:00:00.82
# Mc/sec: 216.26
//
Query:       MMETSP0890-20130614|37603_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-16   59.1   0.0    2.4e-15   56.6   0.0    1.9  1  PF13621.1  Cupin-like domain
    2.3e-08   33.5   0.0    4.1e-08   32.7   0.0    1.5  1  PF08007.7  Cupin superfamily protein
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.022   14.3   0.0    1.5  1  PF02311.14 AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   5.2e-19   2.4e-15       9     231 ..      38     244 ..      30     264 .. 0.66

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 5.2e-19
    PF13621.1   9 vakrrPviikgalk.d.wpalqkwkdeylleylkekygdvkvevektpdgvadsfeenedlkkvkfseekmtfkdfldkleagedkrseeylylqnsnlaeefpelr...........edsdlpfapelfgkk.peavnlWlGnsas..ssslHhDh..yeNlycvvsGrKrftLfppsdapklyvasleesgtsvssvdve...npdlekfprfkdakalevelepGevLYlPalWfHeVsss 231
                  v+ +rP +++++++ d wp    + +   +eyl+ + g++kv++ +++                        +++++d++e g+     e +yl n++l++ +p  +            ++ l+ a e + ++ ++   l+l + +s     lH+D+   + + +++ G KrftL+pp+ +++ly+++        s ++ +   n++le fp f+ a+++ + lepG+  +lP  ++H  +  
  MMETSP0890-20130614|37603_1  38 VEAERPAVLRQCARfDwWPG---FIN---IEYLRRHCGERKVKI-VGQ---------------------YRLLSEYFDSVEIGN-----EKAYLRNQQLRDLLPPDEfvrlrfplsalGQNALSQAVETLPEAwRQWFELFLLPAHSqgYPFLHKDVceTHAFSMQLFGAKRFTLYPPNNSTFLYPQPPTYC---RSALP-QagrNINLEMFPMFASARPFSFVLEPGDLFFLPRNFWHSTRPE 244
                  66667777777754223332...222...677777777777776.221.....................234778888888886.....566777777766666544222224443332244444444444333444446665655411689*****7778999*********************9983222...22222.2344**********************************87654 PP

>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   8.9e-12   4.1e-08      91     230 ..     126     281 ..      41     290 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 8.9e-12
                  EEE-GGGT-HH.HHHHHHHHHH-----EEEEE--------.SEE-SSE..EEEEEEE--EEEEEE-..............-SSTT-SS-EE--TTT--....--SEEEEE----EEEE----EEEEE---....----EEE...EEEEE-TT..-----HHHHH-- CS
    PF08007.7  91 qLlqpfrfepe.wrlddvmesfslvgsnvYatpggsqgvg.pHyDdyD..VfllQleGrkrWrvyk..............ptvpelelkseeplkildef..epvedfvLepGDlLYlPrgviHqgvaed...esltlSvg...lraptaaellesvldllldklp 230
                  +L q+ + +pe wr  +  e        +++ p++sqg++  H D  +  +f +Ql G kr  +y                     +  ++ +l+ + +f  +  + fvLepGDl +lPr ++H+ ++e    +   +++g   + ++t+ ++ ++++d+++ ++ 
  MMETSP0890-20130614|37603_1 126 ALSQAVETLPEaWR--QWFE--------LFLLPAHSQGYPfLHKDVCEthAFSMQLFGAKRFTLYPpnnstflypqpptyCRSALPQAGRNINLEMFPMFasARPFSFVLEPGDLFFLPRNFWHSTRPEPtqlTKYGITIGgnfVSPSTYPTFQDEFADYAAMRDL 281
                  55566666666555..2333........4588999999995599976633799************999***999888443222233445567888888887666679******************99987545556678886644566777777888888776665 PP

>> PF02311.14  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.8e-06     0.022      43      78 ..     223     257 ..     214     274 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.8e-06
                  E------EEEE-----EEE---TTSEEEEEEEEE-- CS
   PF02311.14  43 ydlgpGdlfLlppgepHdyesdsedgweyrwlyfeg 78 
                  + l+pGdlf+lp++ +H+ ++++   ++ + +++ g
  MMETSP0890-20130614|37603_1 223 FVLEPGDLFFLPRNFWHSTRPEPT-QLTKYGITIGG 257
                  789*******************97.66666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 1063.84
//
Query:       MMETSP0890-20130614|37596_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-16   58.0   0.1    1.1e-15   57.3   0.1    1.3  1  PF04003.7  Dip2/Utp12 Family
    8.3e-12   44.4   8.2    7.7e-07   28.6   0.0    4.3  4  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.029   13.8   0.0      0.084   12.3   0.0    1.8  1  PF12657.2  Transcription factor IIIC subunit delta N-term


Domain annotation for each model (and alignments):
>> PF04003.7  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   2.5e-19   1.1e-15       1     105 [.     437     538 ..     437     542 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 2.5e-19
    PF04003.7   1 neeelvrkvlekippsdiedtlasLpfsyvpklLkfLaellaaedsphlefllrwlkallsaHgkalqaqapsllpaLrslqkvlrrrlkdlakllelnvykLdy 105
                  n+++l+++vl+   ++ ie+t+ +L + ++++lL+++a ++  +++++   l  w   ll++H++al  + p+l ++L  l ++l +rl+ l k+l l  ++ d+
  MMETSP0890-20130614|37596_1 437 NDDRLIEEVLQHSESRLIERTVDRLAPALALPLLRAIARRIE-RRPNRGNQLTPWATQLLVTHASALARA-PDLEAQLAPLDNLLAKRLDALPKMLALL-GRFDF 538
                  899***************************************.**************************9.************************9987.77776 PP

>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.4e-06     0.025       8      39 .]      31      62 ..      26      62 .. 0.91
   2 ?    0.8   0.7       0.1   4.5e+02      12      38 ..      85     110 ..      80     111 .. 0.62
   3 ?    1.6   0.0     0.055   2.5e+02       7      30 ..     123     145 ..     118     147 .. 0.85
   4 !   28.6   0.0   1.7e-10   7.7e-07      10      39 .]     174     203 ..     172     203 .. 0.97

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.4e-06
                 ESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  8 rgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 rg +++ tcv++sp  +ll  g + g i +Wd
  MMETSP0890-20130614|37596_1 31 RGGNKTYTCVCWSPGERLLGVGTAQGEIVVWD 62
                 7888999************************9 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.1
                  SSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgSrDgtirlW 38 
                  +++t ++++    l+ s+S+ + + +W
  MMETSP0890-20130614|37596_1  85 DSITFCSWDKL-LLVGSSSSESRVGIW 110
                  45555666666.666666677777777 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.055
                  EESSSSSEEEEEEESSSTEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspdgpllasgS 30 
                  l++ + +V++v+ s +  +la++S
  MMETSP0890-20130614|37596_1 123 LKADKRGVSAVSASSN-GVLATAS 145
                  6677889999999999.*****99 PP

  == domain 4    score: 28.6 bits;  conditional E-value: 1.7e-10
                  SSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  10 HtspVtcvafspdgpllasgSrDgtirlWd 39 
                  Ht p+t++a+s dg++las++ D+++ ++d
  MMETSP0890-20130614|37596_1 174 HTEPITALAWSTDGRFLASCGTDRSVLIFD 203
                  ***************************998 PP

>> PF12657.2  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05     0.084       8      64 ..     179     240 ..     174     270 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-05
    PF12657.2   8 nalsWSeDgql..avatgetvhil..svstPe.slskssqetpstlnassaqwkitrlegnl 64 
                   al+WS Dg+   +  t+++v i+  s+++P   ls s+ +  ++l ++++  + ++ +++ 
  MMETSP0890-20130614|37596_1 179 TALAWSTDGRFlaSCGTDRSVLIFdsSSNLPIfALSLSFAASALSLRHCNQRLELAAADTHT 240
                  59*******962256799999999*99999*9955555666666666665555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.42s 00:00:01.49 Elapsed: 00:00:00.81
# Mc/sec: 1852.00
//
Query:       MMETSP0890-20130614|37608_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.66
# Mc/sec: 806.05
//
Query:       MMETSP0890-20130614|37610_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-64  215.1   0.0    9.3e-64  214.9   0.0    1.0  1  PF00069.20 Protein kinase domain
    2.5e-30  105.3   0.0      3e-30  105.0   0.0    1.1  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   1.4e-67   9.3e-64       4     260 .]       3     273 ..       1     273 [. 0.90

  Alignments for each domain:
  == domain 1    score: 214.9 bits;  conditional E-value: 1.4e-67
                  EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE.TT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST..HHHHHHHHHCCCHHTTS--GGGGCSHHH........HHHHHHHHHHT-SSGGGS--.....HHHHHTSGGH CS
   PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld.kkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge..seedqleliekilkkkleedepksssks........eelkdlikkllekdpakRlt.....aeeilkhpwl 260
                    +lG+GsfGkV  a+++++g+ vA+K+l k     + ++ +v+ E ++l kl+Hpni +++++f ++d+lyl+le+v gg+l+  +k+++ l+   + +++ +i+ +ley+Hs+++++rDLKpeN L+d  +g+lk++DFG+ak l  +  + +t++gt+eYm+PE+l  +++++++ D+WslG++lye++ g++pf ++  + ++q  l++ + + +l+++  + +            ++kdl + ll+kd ++Rl      a+ei++hp+l
  MMETSP0890-20130614|37610_1   3 FATLGAGSFGKVKLARHQDSGTVVALKMLTKAVIIATRQIGNVKsEKELLMKLRHPNIARCYGTFADEDYLYLMLELVLGGELYGRIKNDQVLDAYAVAFYTANIVLALEYIHSKRVLYRDLKPENALIDqYTGYLKLVDFGFAKLLAPDADSSYTICGTPEYMSPEILS-GSGHGPPTDWWSLGCLLYEMCLGRTPFVKDstQPTNQVLLYKAVASADLNFQDLERT--FpkdndqarCDFKDLATALLAKDWHERLGsakagATEIKRHPFL 273
                  679*********************************999999989*************************************************************************************779999**********999999******************.****************************99553344444455555555555544333..13466777789*****************9999999999999985 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   4.4e-34     3e-30       5     213 ..       4     206 ..       1     248 [. 0.85

  Alignments for each domain:
  == domain 1    score: 105.0 bits;  conditional E-value: 4.4e-34
                  EEE-------EEEEEEETTTTSSEEEEEEEEECT..TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT.EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHH CS
   PF07714.12   5 kklGeGafGkVvegtlkgekekkevkVavKtlke..saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeek.vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee 213
                   +lG+G+fGkV  ++++    ++ + Va+K+l++    + ++  ++ +e ++++kl+hpni +++g + +e+ l++ +e+v gG+L+  +++   + l+   +  ++++i  ++ey++sk+++ rdL   N L+++ +   k+ DfG a+ +    +  ++ +     ++m+pE+l+ +     +D Ws G+ll+E++  g++p+ + s++ 
  MMETSP0890-20130614|37610_1   4 ATLGAGSFGKVKLARHQ----DSGTVVALKMLTKavIIATRQIGNVKSEKELLMKLRHPNIARCYGTFADEDYLYLMLELVLGGELYGRIKND--QVLDAYAVAFYTANIVLALEYIHSKRVLYRDLKPENALIDQYTgYLKLVDFGFAKLLAP--DADSSYTICGTPEYMSPEILSGSGHGPPTDWWSLGCLLYEMCL-GRTPFVKDSTQP 206
                  68*************99....8999*******763445666799**********************************************997..9***************************************9555*************33..3444445556779***************************987.999987654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.62
# Mc/sec: 1283.21
//
Query:       MMETSP0890-20130614|37618_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 262.83
//
Query:       MMETSP0890-20130614|37622_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.86
# Mc/sec: 312.08
//
Query:       MMETSP0890-20130614|37615_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0022   17.4   0.0     0.0024   17.2   0.0    1.1  1  PF00038.16 Intermediate filament protein
     0.0042   16.8   2.7     0.0079   16.0   1.9    1.4  1  PF01166.13 TSC-22/dip/bun family
  ------ inclusion threshold ------
      0.013   15.0   0.2      0.013   15.0   0.2    1.9  2  PF07558.6  Shugoshin N-terminal coiled-coil region
      0.014   15.5   2.4      0.029   14.5   1.7    1.4  1  PF06005.7  Protein of unknown function (DUF904)
      0.017   14.5   1.1      0.027   13.9   0.8    1.2  1  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      0.023   14.2   1.3      0.031   13.7   0.9    1.2  1  PF04156.9  IncA protein
      0.029   13.5   1.7      0.042   12.9   1.2    1.1  1  PF11932.3  Protein of unknown function (DUF3450)
      0.038   12.8   0.9      0.056   12.2   0.6    1.2  1  PF04849.8  HAP1 N-terminal conserved region
      0.042   13.4   0.1      0.063   12.8   0.0    1.2  1  PF04201.10 Tumour protein D52 family
      0.044   12.0   0.1       0.05   11.8   0.1    1.1  1  PF09730.4  Microtubule-associated protein Bicaudal-D
      0.061   13.2   1.5      0.094   12.5   1.1    1.2  1  PF03245.8  Bacteriophage lysis protein
      0.064   13.0   4.0       0.11   12.2   2.8    1.3  1  PF11559.3  Afadin- and alpha -actinin-Binding
      0.072   13.4   1.0       0.15   12.4   0.7    1.5  1  PF13600.1  N-terminal domain of unknown function (DUF4140)
      0.074   12.6   0.9       0.12   11.9   0.6    1.3  1  PF12325.3  TATA element modulatory factor 1 TATA binding
       0.08   10.9   0.0       0.09   10.8   0.0    1.1  1  PF01763.11 Herpesvirus UL6 like
       0.08   13.1   0.3       0.14   12.3   0.2    1.5  1  PF06156.8  Protein of unknown function (DUF972)
      0.099   12.3   4.1       0.52   10.0   2.9    2.1  1  PF05812.7  Herpesvirus BLRF2 protein
       0.11   12.3   1.6        0.2   11.5   1.1    1.4  1  PF00170.16 bZIP transcription factor
       0.16   11.0   2.2       0.22   10.6   1.5    1.2  1  PF10234.4  Clusterin-associated protein-1
       0.16   11.6   3.2       0.36   10.5   2.2    1.6  1  PF07716.10 Basic region leucine zipper
       0.29   11.2   3.2       0.62   10.1   2.2    1.5  1  PF10883.3  Protein of unknown function (DUF2681)
       0.31   10.7   6.7       0.44   10.2   4.6    1.3  1  PF08614.6  Autophagy protein 16 (ATG16)
       0.68    9.6  10.7      0.054   13.1   3.9    1.8  2  PF12329.3  TATA element modulatory factor 1 DNA binding
       0.99    8.8   8.6      0.085   12.2   2.7    1.6  2  PF04977.10 Septum formation initiator
        1.4    6.9  17.1        1.6    6.7  11.8    1.0  1  PF09770.4  Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.4e-06    0.0024      39      94 ..      91     146 ..      85     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.4e-06
   PF00038.16  39 ekksaevsklkelyekelaelrkqldeltkerarleleldnlreeledlrekyeke 94 
                  +++s+ +++  e    ++ +l+kq+ +lt+e+a l  +l+ ++ e+ +l++k+ ++
  MMETSP0890-20130614|37615_1  91 QETSKGSTPPAENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSK 146
                  44455666666777789***********************************9988 PP

>> PF01166.13  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.9   1.4e-05    0.0079      21      58 ..     106     143 ..     102     145 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-05
   PF01166.13  21 eqIkeLeeknsklerEnellkslaspeqleqlqsqlql 58 
                  +qI  L++++s+l  En++l + +s  q e++q +++l
  MMETSP0890-20130614|37615_1 106 DQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKL 143
                  79*******************************98876 PP

>> PF07558.6  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       9.6   5.2e+03      16      30 ..      64      78 ..      63      79 .. 0.72
   2 ?   15.0   0.2   2.4e-05     0.013      22      46 .]     107     131 ..     106     131 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 9.6
    PF07558.6 16 Nsalsikiselekev 30
                 ++++s +++e+ k +
  MMETSP0890-20130614|37615_1 64 VKQISRPKQEMSKGS 78
                 577888888887766 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.4e-05
    PF07558.6  22 kiselekevskLlnENvnLRellla 46 
                  +i+ l+k +s+L +EN++L+++l+a
  MMETSP0890-20130614|37615_1 107 QIMKLQKQISQLTTENATLTQQLSA 131
                  6999******************986 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.7   5.2e-05     0.029      18      54 ..     106     142 ..     103     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.2e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF06005.7  18 dtialLqmeieeLkeeneqlkeeneeLeeenkklkee 54 
                  d+i++Lq+ i++L +en++l+++ ++ + e+ +lk+ 
  MMETSP0890-20130614|37615_1 106 DQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQK 142
                  89*******************************9985 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.8   4.9e-05     0.027      72     111 ..     106     145 ..     101     153 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.9e-05
    PF07106.8  72 eelnkldaeieelreevqelkqeiselekelkkLtseltt 111
                   +++kl+++i++l++e+  l q+ s +++e+ +L+++lt 
  MMETSP0890-20130614|37615_1 106 DQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTS 145
                  5789********************************9986 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   5.7e-05     0.031      88     127 ..     106     145 ..      60     150 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.7e-05
    PF04156.9  88 sqlseleeeleqleerlaeleseledleedlellqeelks 127
                  +q+ +l+++++ql +++a+l+++l++ + +  +l++ l+s
  MMETSP0890-20130614|37615_1 106 DQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTS 145
                  5666777777777777777777777777777777766665 PP

>> PF11932.3  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   7.7e-05     0.042      39      95 ..      88     144 ..      82     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.7e-05
    PF11932.3  39 aqsqkkidkladqtqellaeieqlqeevenlkvyndqleklvenqqqelaslqeqie 95 
                  ++ q+  + ++  +++   +i +lq+++++l++ n++l+++++  q+e+ +l++++ 
  MMETSP0890-20130614|37615_1  88 TSKQETSKGSTPPAENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLT 144
                  45566666677777888899********************************99875 PP

>> PF04849.8  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6    0.0001     0.056      89     124 ..     111     146 ..     103     148 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
    PF04849.8  89 LlkqnkvLseknekleeslekaleevaqLrhelnlk 124
                  L kq ++L+++n +l+++l +a+ e+ qL+++l  k
  MMETSP0890-20130614|37615_1 111 LQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSK 146
                  667778888888888888888888888888877665 PP

>> PF04201.10  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012     0.063      32      69 ..     109     146 ..      80     155 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00012
   PF04201.10  32 eeLkaeLakleeeistLrqvLaakekhlaelkrkLGls 69 
                   +L++ +++l  e  tL q L+a +  ++ lk+kL  +
  MMETSP0890-20130614|37615_1 109 MKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSK 146
                  57999999**************************9765 PP

>> PF09730.4  Microtubule-associated protein Bicaudal-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.1e-05      0.05     418     457 ..     105     144 ..      58     175 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.1e-05
    PF09730.4 418 qekiaelekelrkltkvagesqgsLnaaqdeLvalSeeLa 457
                   ++i +l+k++ +lt+   + +++L+aaq e+++l ++L+
  MMETSP0890-20130614|37615_1 105 SDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLT 144
                  3356666666666666666666666666666666655554 PP

>> PF03245.8  Bacteriophage lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1   0.00017     0.094       5      59 ..      90     144 ..      85     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00017
    PF03245.8   5 akrqadkknqeleaanaeiedlqarqravaeldakhteeLadaksendrLradva 59 
                  ++++ +  +  +e+  ++i +lq+++ ++ + +a  t++L+ a++e+ +L++++ 
  MMETSP0890-20130614|37615_1  90 KQETSKGSTPPAENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLT 144
                  45555555556666679**********************************9986 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.8   0.00021      0.11      72     110 ..     105     143 ..      85     147 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00021
    PF11559.3  72 qskierlktqleqlerelallqekerqlekklktleqkl 110
                  + +i +l++q +ql++e+a+l+++  ++++++ +l+qkl
  MMETSP0890-20130614|37615_1 105 SDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKL 143
                  445555555555555555555555555555555555554 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   0.00027      0.15      61     101 ..      97     137 ..      86     140 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00027
    PF13600.1  61 qekdadaaseelaeleaelraledelarleaekealearia 101
                  ++++a+ +s+++ +l++++++l+ e a l ++++a++++i 
  MMETSP0890-20130614|37615_1  97 STPPAENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEII 137
                  4567899999***************************9985 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   0.00022      0.12      19      60 ..     101     142 ..      85     150 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00022
    PF12325.3  19 veklsstirrlEgElaslkeelarLekerdeareEivkltee 60 
                   e+ s +i +l  ++++l++e+a L+++ + a+ Ei++l ++
  MMETSP0890-20130614|37615_1 101 AENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQK 142
                  455566777777777777777777777777777777776554 PP

>> PF01763.11  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.09     370     417 ..     106     158 ..      67     190 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00016
   PF01763.11 370 eqineqfdtiekLkeenedlekklkeleseLerlreeekasasleae.....d 417
                  +qi ++ ++i++L +en++l+++l+  ++e+ +l+++  ++ + + +     +
  MMETSP0890-20130614|37615_1 106 DQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSKPTPKPAanlppP 158
                  79*******************************99985544444322234333 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00026      0.14      21      67 ..     105     151 ..      82     172 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00026
    PF06156.8  21 leeleelkkelkelleenaelkleneklrerleeleeeekkkekkkk 67 
                   +++ +l+k++++l+ ena+l+ + ++ ++++ +l+++ ++k + k 
  MMETSP0890-20130614|37615_1 105 SDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSKPTPKP 151
                  56888888888888888888888888888888888886655555544 PP

>> PF05812.7  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.9   0.00094      0.52       7      32 ..     110     145 ..     105     170 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00094
                  HHHHHHHHHHHHHHHHHHCHHH---........... CS
    PF05812.7   7 eLaaelakLklENkaLkkklksstg..........p 32 
                  +L++++++L+ EN +L ++l   ++          +
  MMETSP0890-20130614|37615_1 110 KLQKQISQLTTENATLTQQLSAAQTeiiqlkqkltS 145
                  89******************9988744444444441 PP

>> PF00170.16  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   0.00036       0.2      28      63 ..     108     143 ..     105     144 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00036
                  HHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
   PF00170.16  28 ieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  i +L++ + +L++eN +L ++l+  + e+ +lk+++
  MMETSP0890-20130614|37615_1 108 IMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKL 143
                  678******************************986 PP

>> PF10234.4  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00039      0.22     172     222 ..     102     152 ..      65     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00039
    PF10234.4 172 kelaeelqklkaelenlksdeanLeekiekkkqelertqkrLkalqsvrPa 222
                  ++  +++ kl++++++l+ ++a+L+++++  ++e+ + +++L++  + +Pa
  MMETSP0890-20130614|37615_1 102 ENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSKPTPKPA 152
                  5667899************************************99999998 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.2   0.00065      0.36      28      54 .]     109     135 ..     107     143 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00065
   PF07716.10  28 eeleervkeLeeeNaqLrqkveqLeke 54 
                  ++l++++ +L++eNa+L q++++ ++e
  MMETSP0890-20130614|37615_1 109 MKLQKQISQLTTENATLTQQLSAAQTE 135
                  579**************9999998876 PP

>> PF10883.3  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2    0.0011      0.62      24      60 ..     107     141 ..     105     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0011
    PF10883.3  24 klkkaerenekLqkeneqlktekavaetevknakvkq 60 
                  ++ k+++++ +L+ en+ l+++  +a+te+     kq
  MMETSP0890-20130614|37615_1 107 QIMKLQKQISQLTTENATLTQQLSAAQTEIIQ--LKQ 141
                  67899999999999999999999999999844..444 PP

>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.6   0.00081      0.44      52     114 ..      76     146 ..      25     148 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00081
    PF08614.6  52 s........sassstsasgsgsdaaiaeleqklaklreelaelhkkrgelaqrllllneeleekreeiaek 114
                  +          ++s+ +  +gs+ + ++ +++++kl++ +++l  +++ l+q+l   ++e+ ++++++++k
  MMETSP0890-20130614|37615_1  76 KgstpprppAEKTSKQETSKGSTPPAENGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTSK 146
                  24445555556666667777778888889999999999999999999999999999999999999998875 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       9.2     5e+03      22      31 ..      86      95 ..      85      98 .. 0.71
   2 ?   13.1   3.9   9.9e-05     0.054      32      72 ..     105     145 ..     101     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 9.2
    PF12329.3 22 ekLskkelkh 31
                 ek sk+e ++
  MMETSP0890-20130614|37615_1 86 EKTSKQETSK 95
                 7888888765 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 9.9e-05
    PF12329.3  32 nntikkLrkknkelekeieelkkkleklekeleeleerlkr 72 
                  + +i kL+k++++l++e ++l+++l+  ++e+ +l+++l+ 
  MMETSP0890-20130614|37615_1 105 SDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQKLTS 145
                  56788888888888888888888888888888888888865 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.7   0.00016     0.085      14      52 ..     103     141 ..     101     145 .. 0.90
   2 ?   -3.0   0.1       8.7   4.8e+03      31      46 ..     209     224 ..     207     226 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00016
   PF04977.10  14 sgllalyqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                  +g  ++++l+++i +l++e+a+l ++  + + e+ +Lk+
  MMETSP0890-20130614|37615_1 103 NGSDQIMKLQKQISQLTTENATLTQQLSAAQTEIIQLKQ 141
                  6667899*****************************974 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 8.7
   PF04977.10  31 aelaklkaeneeLeae 46 
                  a+++k k+++ + eae
  MMETSP0890-20130614|37615_1 209 ADIEKKKNQKYDFEAE 224
                  4566666666555555 PP

>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.8    0.0029       1.6     168     302 ..      41     179 ..      29     225 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0029
    PF09770.4 168 rqqaqqlpqppaqvlpqqspprqaalpqqakpelpsqypqppq...ql..qqevq.qqlqqapsqapaqaplpaqlpqqlqnlqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaq.qqlaslplp 302
                   +qaqq ++ p +++p +  ++q ++ ++ k+e+ ++ +  p    +   +qe    + ++a++ + + ++l++q++q +++++  +l q+   ++ + +q +q+   ++++ p+a  pp ++ s  p+ ++  +++s+ +p
  MMETSP0890-20130614|37615_1  41 IKQAQQSGTSPSKSVPPPPKEPQVKQISRPKQEMSKGSTP-PRppaEKtsKQETSkGSTPPAENGSDQIMKLQKQISQLTTENA--TLTQQLSAAQTEIIQLKQKLTSKPTPKPAANLPPPKMVSTTPEKKNlPKYESPRPP 179
                  4677777777777777777777666555666666655553.3332322333333334444444445555555999999988888..77777777778888888866667777776666655544444433321333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1031  (0.0754096); expected 273.4 (0.02)
Passed bias filter:                      684  (0.0500293); expected 273.4 (0.02)
Passed Vit filter:                       173  (0.0126536); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.76
# Mc/sec: 725.21
//
Query:       MMETSP0890-20130614|37613_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-40  139.1   1.0    1.1e-40  139.1   0.7    3.0  2  PF00687.16 Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> PF00687.16  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.7   8.3e-45   1.1e-40       1     221 []      24     275 ..      24     275 .. 0.92
   2 ?  -10.8   9.8         1   1.4e+04      14     104 ..     322     400 ..     307     405 .. 0.50

  Alignments for each domain:
  == domain 1    score: 139.1 bits;  conditional E-value: 8.3e-45
                  HHHHCT.....T...--SSSSTTEEEEEE----SSSTTSB-.---B-------.----EBEE-.---.TTS...........................................STTC----B----TTTTH...SHSSS...TT-SEEEE-SCGB-----.----S.S-------S---....----HHHCCH---BS-EE-B---EEEE---TSSSHHHHCHHHHHHHHHHHHT------.TTSEEEEES----E CS
   PF00687.16   1 vkalkkhikkkaeededrkfdesvelqitlkkdpskkdkrvkpgkikLphplgskevkvclivkdpqrkykeke....................................klkeeakdaiadiiglekLkkkyksfekkrklakefdvfladdrimpllpklLGkvfygpkgkmPipvrltkkkdlkkqiekalkstvvflpdkgtnisvkvGklsmspeelaeNieavlkalvskelpkgwdniksiylkttmgpa 221
                  v+al++++kk    ++ + ++e v +qi lkk   ++  +vkp  i++ph l+ ++ +vcl+vkd+++++ +++                                    k+ e++  ++a++i+l+kL++ y +f+++r+l +++dvf+addri+p+l k+LG++f++++ k Pi  ++t++  l++ i  a       l+  +++i+++ ++++ms +++++Ni   +++++++ +pk+w+ + +++lk  +++a
  MMETSP0890-20130614|37613_1  24 VQALLAYHKKSR-AEKLDLSEEYVLVQIGLKKALGTA--KVKPHVITVPHVLR-DQPSVCLLVKDSDKSWVKALtvegtqvgqkkkrpkidgtratkrkrreesvfeigdKDAEKQDPSVAKVISLSKLRTSYARFQARRELRDNYDVFVADDRILPMLTKTLGSTFFSRR-KQPIAMDVTRPSALNARILAAATMPNLVLKTGTNCIAINLAHTDMSIDQIIDNIIHGVNSIINDYVPKQWSGVLNVHLKLHDSVA 275
                  689999999877.55556678***********55555..89***********9.*************9999444689********************************9888888899************************************************9877.**********999*****9999988888887899****************************667***************99975 PP

  == domain 2    score: -10.8 bits;  conditional E-value: 1
                  ..--SSSSTTEEEEEE----SSSTTSB-.---B-------.----EBEE-.---.TTS.......STTC----B----TTTTH...SHSSS CS
   PF00687.16  14 ededrkfdesvelqitlkkdpskkdkrvkpgkikLphplgskevkvclivkdpqrkykekeklkeeakdaiadiiglekLkkkyksfekkr 104
                  ++e++k  +++e +++  ++p+kk  +v + + + ++p   kev  c  + + + k      +k+++k++ ++ i++++L     + +kk+
  MMETSP0890-20130614|37613_1 322 NLEEQKDISPLEAVVKEEIQPKKK--KV-KSSSSTKNPK--KEVMPCSST-NATVK------KKNKKKNTSSTTIPTTDLTDAIVKKKKKK 400
                  445555556666666655555555..34.3333333333..444444444.22222......23355566777888888887765555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1363  (0.0996928); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.40s 00:00:01.19 Elapsed: 00:00:01.05
# Mc/sec: 926.59
//
Query:       MMETSP0890-20130614|37630_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-16   59.1   0.1    4.3e-16   58.5   0.0    1.3  1  PF13662.1  Toprim domain
      2e-14   53.5   0.0    3.1e-14   52.9   0.0    1.3  1  PF08275.6  DNA primase catalytic core, N-terminal domain
    8.8e-09   35.4   0.0    1.4e-08   34.7   0.0    1.3  1  PF13155.1  Toprim-like
    1.6e-06   27.7   0.0    2.5e-06   27.1   0.0    1.3  1  PF01751.17 Toprim domain
    3.4e-06   27.1   0.0    4.9e-06   26.5   0.0    1.3  1  PF13362.1  Toprim domain


Domain annotation for each model (and alignments):
>> PF13662.1  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.6e-19   4.3e-16       2      71 ..      71     139 ..      70     153 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 1.6e-19
    PF13662.1   2 eiiivEgyaDvlaleqagfkgvvavlggnlsplagagpeklkiavkevilatDnDaaGeaaalelakall 71 
                  e+iivEgy+Dvl+l+ +g+++vva lg  l +  +++++ +  + + vil +D+D aG aa+++l   ll
  MMETSP0890-20130614|37630_1  71 EAIIVEGYFDVLTLHDCGIRNVVAALGVTL-TRFQIEHAARYSESRAVILLLDSDSAGNAATDKLCASLL 139
                  78*************************999.99999988888889*******************999444 PP

>> PF08275.6  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.1e-17   3.1e-14      73     127 ..       3      62 ..       1      63 [. 0.94

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.1e-17
    PF08275.6  73 drfrnrimfPIkdekgkvvgfggral.....ddeekpKYlNspetelFkKskllYglhea 127
                  drf +r++ PI+d  g++vgfg r l      +++ pKY+Nsp +++F Ks+ll+gl++a
  MMETSP0890-20130614|37630_1   3 DRFAERLVLPIRDPAGQTVGFGSRLLpqptiYKKNVPKYVNSPVSSVFAKSRLLFGLDQA 62 
                  9*************************99999778888********************997 PP

>> PF13155.1  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   5.2e-12   1.4e-08       1      94 [.      73     164 ..      73     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 5.2e-12
    PF13155.1   1 vvfEsaiDalSyaqlgkenlkdtrslaslgtkltkalakyleekre.keivlalDnDeaGrkaaeklkkalkekg..kenekvkvvrlpekkDwnel 94 
                  +++E+++D+l ++  g++n     ++a lg  lt+ +++   +++e   ++l lD+D aG++a++kl + l ++        v+v++l++ kD  ++
  MMETSP0890-20130614|37630_1  73 IIVEGYFDVLTLHDCGIRN-----VVAALGVTLTRFQIEHAARYSEsRAVILLLDSDSAGNAATDKLCASLLPNLvqDAGLDVSVSHLKPFKDAADF 164
                  699****************.....9******999977777734444355******************966655543344466666676666777665 PP

>> PF01751.17  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   9.2e-10   2.5e-06       2      74 ..      72     140 ..      71     152 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 9.2e-10
                  EEEESSHHHHHHHHTTTTE.TEEEEEC----EESHSHHHHHHHHHTSSEEEEE--SS----HHHHHHHHHHTC CS
   PF01751.17   2 lvivEgpskaktikkalgsdfqavvalkGhilnlekikelkelakradkiilatDpDreGeaiawellellkr 74 
                   +ivEg+ ++ t++  +     +vva+ G  l+  +i+  ++  ++   +il++D D +G+a++ +l   l +
  MMETSP0890-20130614|37630_1  72 AIIVEGYFDVLTLHDCGI---RNVVAALGVTLTRFQIEHAARY-SESRAVILLLDSDSAGNAATDKLCASLLP 140
                  79****************...78***********99*999987.789****************9999877765 PP

>> PF13362.1  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.8e-09   4.9e-06       2      88 ..      72     163 ..      71     174 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.8e-09
    PF13362.1   2 livaEGietaLsirraatgapvvallsaanlk...aldlp...ervkrviIaaDnDkanegqkaaekl.....aerleasgievsvlepgeegeDwnd 88 
                   i++EG++++L++ + +    vva+l+++  +   +   +   ++ + vi+++D D a  g++a +kl      + ++++g++vsv    +  +D+ d
  MMETSP0890-20130614|37630_1  72 AIIVEGYFDVLTL-HDCGIRNVVAALGVTLTRfqiEH--AarySESRAVILLLDSDSA--GNAATDKLcasllPNLVQDAGLDVSVSHL-KPFKDAAD 163
                  59***********.9*************777764422..2445789999*********..99999999555543333446665555444.33334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      209  (0.0152867); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:00.75
# Mc/sec: 741.27
//
Query:       MMETSP0890-20130614|37631_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-21   74.1   0.6    5.9e-20   71.3   0.4    2.0  1  PF10294.4  Putative methyltransferase
    1.6e-07   31.7   0.0    2.7e-07   31.0   0.0    1.4  1  PF12847.2  Methyltransferase domain
    0.00014   21.8   0.0    0.00026   20.8   0.0    1.5  2  PF13659.1  Methyltransferase domain
    0.00017   21.1   0.0     0.0004   19.9   0.0    1.5  2  PF13489.1  Methyltransferase domain
    0.00018   20.8   0.0    0.00026   20.3   0.0    1.2  1  PF05175.9  Methyltransferase small domain
      0.004   16.2   0.0     0.0052   15.8   0.0    1.2  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0064   16.8   0.0      0.015   15.6   0.0    1.7  1  PF08242.7  Methyltransferase domain
     0.0071   15.1   0.0      0.022   13.5   0.0    1.7  1  PF05219.7  DREV methyltransferase
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.035   13.3   0.0    1.2  1  PF03602.10 Conserved hypothetical protein 95
      0.049   13.1   0.3       0.36   10.2   0.2    2.0  1  PF13847.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.4   4.3e-23   5.9e-20       5     147 ..      35     180 ..      31     219 .. 0.73

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 4.3e-23
    PF10294.4   5 keLkieedtgnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkakvLdW........geelkedvlekee.....vDlilaaDcvYledslelLvktLkdll 147
                  +++ iee+   s g+ vWd a+v++k le+      + +++ g++vlELG+GtGlvG+++a+l +  +v+lt ++ +l+ l++ ++ n+  l s +++k LdW        g++ +++++ +++     +Dlila+D++   +   + +k+L+ ++
  MMETSP0890-20130614|37631_1  35 SKICIEES-YSSTGTRVWDTAIVMAKLLEQ------NPSNVYGKNVLELGAGTGLVGLVAARL-GAKSVLLTEISSTLPSLNQAVARNN--LGSLCSVKCLDWnalnyqspGQQQEDNIFFQRNtdqfsFDLILASDVLICRQWACAFIKVLTVIS 180
                  55556554.5678************99999......57899*********************9.889********************99..************33333333233444443222222233899999999888777666666665443 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     2e-10   2.7e-07       2      84 ..      70     169 ..      69     193 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2e-10
    PF12847.2   2 gkrilDlGcGtGslslelarlrpgak.vvgvDpseeslelarenaksldleeriellqgdakeelsller..................fDavllkg.l.tldal 84 
                  gk++l+lG+GtG+++l++ar   gak v+  ++s    +l ++ a +++l++ +++++ d+ ++l+ + +                  fD++l+++ l + +++
  MMETSP0890-20130614|37631_1  70 GKNVLELGAGTGLVGLVAAR--LGAKsVLLTEISSTLPSLNQAVA-RNNLGSLCSVKCLDW-NALNYQSPgqqqedniffqrntdqfsFDLILASDvLiCRQWA 169
                  689*****************..888889*******9999999999.999*********888.33333333456788999999999999******9966533333 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.9e-07   0.00026       2      76 ..      71     159 ..      70     169 .. 0.70
   2 ?   -3.7   0.0       7.5     1e+04      18      33 ..     212     228 ..     209     230 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.9e-07
    PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdl...............aellragsfdlvvt 76 
                    vl++g+G+G + l+a++l+a+ +l +E+++    l  +++ar++l + + v + d+ +l               ++ +++ sfdl+++
  MMETSP0890-20130614|37631_1  71 KNVLELGAGTGLVGLVAARLGAKSVLLTEISSTLPSLN-QAVARNNLGSLCSVKCLDWNALnyqspgqqqedniffQRNTDQFSFDLILA 159
                  68*****************************9964443.444444454455555555555544666666666655533566677888876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 7.5
    PF13659.1  18 alell.aalllgvEldp 33 
                  +lell   +++++El+p
  MMETSP0890-20130614|37631_1 212 FLELLsSCNFHVTELQP 228
                  56777788999999988 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     3e-07    0.0004      20      89 ..      67     163 ..      51     167 .. 0.79
   2 ?   -2.8   0.0       2.9   3.9e+03      34      52 ..     210     228 ..     208     235 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3e-07
    PF13489.1  20 lkpggrvLDiGcGtGillellaengf.dvtgvDpspaaigk.......................akqaqksqfdeedaaepag.....kfdlivarevl 89 
                  +  g++vL++G+GtG +  + a+ g+ +v   ++s+ + +                           +q    ++ed+ + ++     +fdli+a++vl
  MMETSP0890-20130614|37631_1  67 NVYGKNVLELGAGTGLVGLVAARLGAkSVLLTEISSTLPSLnqavarnnlgslcsvkcldwnalN--YQSPGQQQEDNIFFQRntdqfSFDLILASDVL 163
                  45678********************96699*******999999************9999999553..444444345545555567778*********98 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.9
    PF13489.1  34 GillellaengfdvtgvDp 52 
                   ++lell+ ++f+vt   p
  MMETSP0890-20130614|37631_1 210 QHFLELLSSCNFHVTELQP 228
                  5677777777777776666 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   0.00026      22      83 ..      56     120 ..      47     144 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.9e-07
                  HHHHHS-TT....------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----..- CS
    PF05175.9  22 lLletlpkk....lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklen.v 83 
                  ++++ l+++     +++vl+lG+G+G++g+++a+ + + +v l++i+   + s ++ +++n+l + +
  MMETSP0890-20130614|37631_1  56 VMAKLLEQNpsnvYGKNVLELGAGTGLVGLVAARLGAK-SVLLTEISS-TLPSLNQAVARNNLGSlC 120
                  56666666644457778*****************9999.899999985.577777777777766543 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.8e-06    0.0052     153     194 ..      59     102 ..      46     144 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.8e-06
    PF06325.8 153 ealekl..vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDe 194
                  ++le+   +  g++vl +G+G+G+  ++aa+Lgak+v+ + i +
  MMETSP0890-20130614|37631_1  59 KLLEQNpsNVYGKNVLELGAGTGLVGLVAARLGAKSVLLTEISS 102
                  5566553344579************************9888865 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05     0.015       1      77 [.      74     164 ..      74     183 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-05
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsai....edakeklakrennnnnnvnlealdlldldgg...............ssfDvvvasnvlh 77 
                  Le+G+GtG +  + ++     +++ ++is+       + a++ l + +  ++++++++al+  +   g                sfD+++as+vl 
  MMETSP0890-20130614|37631_1  74 LELGAGTGLVGLVAARL-GAKSVLLTEISSTLPslnqAVARNNLGSLC--SVKCLDWNALNYQSP--GqqqedniffqrntdqFSFDLILASDVLI 164
                  8*******777777666.777788*****9987665555555555555..455555555553322..1347799********99**********96 PP

>> PF05219.7  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-05     0.022      88     237 ..      63     225 ..      54     232 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
    PF05219.7  88 spasdqedkklldlGaGdGeitkrvapt.feevyatelsetm...rdrlkkkkynvlsa...lelqetdvkl......dlilclnlldrcfdplklledirsalepngrvival.vlPvshyvetntgksekpsellevkGrsyeeevarlievlkkagfevea 237
                  +  s+   k++l+lGaG G +    a    + v  te+s+t+    + + + +   l     l+++  +++       d i      d+    l l  d+   ++  +  i  l v+  + ++ t t +s k+  +l    r   + v++++e+l  ++f+v  
  MMETSP0890-20130614|37631_1  63 QNPSNVYGKNVLELGAGTGLVGLVAARLgAKSVLLTEISSTLpslNQAVARNNLGSLCSvkcLDWNALNYQSpgqqqeDNIFFQRNTDQFSFDLILASDVLICRQWACAFIKVLtVISNMIHLSTTTNSSSKLPTILIGSPRD-RDGVQHFLELLSSCNFHVTE 225
                  445677889************99877652566********9822223344444444433111456544332221111255655566677777778899**9999999998855537888888888898999999998655554.799*************9975 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.6e-05     0.035      40      89 ..      67     115 ..      57     157 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.6e-05
   PF03602.10  40 elegarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealk 89 
                  ++ g++vL+l aG+G +gl A+  gaksv+l e +++    l++ +++ +
  MMETSP0890-20130614|37631_1  67 NVYGKNVLELGAGTGLVGLVAARLGAKSVLLTEISSTL-PSLNQAVARNN 115
                  477899***************************98754.33444444444 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00026      0.36       4      76 ..      70     142 ..      69     193 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00026
    PF13847.1   4 gikvlDlGCGtGylllelaeelgpgak.vvGiDiseeaielAkeraqklgfenveFiqgdieeleklle....esfDl 76 
                  g++vl+lG+GtG  +l +a +l  gak v + +is +  +l +  a+++    +++   d+++l+  ++    ++ D 
  MMETSP0890-20130614|37631_1  70 GKNVLELGAGTGLVGLVAA-RL--GAKsVLLTEISSTLPSLNQAVARNNLGSLCSVKCLDWNALN--YQspgqQQEDN 142
                  579****************.66..45558888888887777777777776667888888888887..55556633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:01.10
# Mc/sec: 548.98
//
Query:       MMETSP0890-20130614|37637_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-14   51.6   0.0      7e-14   51.2   0.0    1.2  1  PF04366.7 Family of unknown function (DUF500)


Domain annotation for each model (and alignments):
>> PF04366.7  Family of unknown function (DUF500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   5.1e-18     7e-14      67     125 ..       2      61 ..       1      62 [. 0.90

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 5.1e-18
    PF04366.7  67 sysksrGlfaGvslegtvlterkdanakfYgrkvtvkdIlkgevea.ppaakkLlevlkk 125
                  sys+srG++ Gv+leg++++ r+d n +f+g++++++dIl   + + p+aa++L++ l++
  MMETSP0890-20130614|37637_1   2 SYSHSRGFYGGVTLEGAYVKVRDDVNLAFFGKQTKAQDILIHATVQpPNAAQPLYAHLDN 61 
                  8**************************************98876661566*****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.36s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 737.93
//
Query:       MMETSP0890-20130614|37646_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-60  203.6   0.0      3e-60  203.3   0.0    1.0  1  PF01128.14 Uncharacterized protein family UPF0007
    2.1e-14   54.0   0.0    2.5e-14   53.7   0.0    1.2  1  PF12804.2  MobA-like NTP transferase domain
     0.0013   18.0   0.0     0.0021   17.3   0.0    1.3  1  PF00483.18 Nucleotidyl transferase
  ------ inclusion threshold ------
      0.069   11.5   0.0       0.11   10.8   0.0    1.3  1  PF01704.13 UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> PF01128.14  Uncharacterized protein family UPF0007
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.0   8.7e-64     3e-60       1     220 [.      29     243 ..      29     244 .. 0.96

  Alignments for each domain:
  == domain 1    score: 203.3 bits;  conditional E-value: 8.7e-64
                  EEEEEEE-----TS-----GCCSB---HBHHHHHHHHHCTSTTEEEEEEEE-GGGHHCHHHCGGGTTCEEEE---HHHHHHHHHHCTT----SEEEE--TT-TT--HHHHHHHHCHHHC---SEEEEEE-SSEEEEE----BEEEEETT---EEE-S-EEEEHHHHHHHHHHHCHCC---SSHHHHHHH----EEEE---CCG----SCCHHHHHHHHHH CS
   PF01128.14   1 vvvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllldksiqlvaGGdeRaesVlnglkalegeakfVLvHDaARpllkaadiaellaaaeqstqgailalpvkDtikrveadglvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiGlsvkvVeGeednlKittpeDlalAeailr 220
                  v+vv+ A G+G+Rmka++pKqflel+g+++l+h+++ +l+ + + kiv+v+++  +eef++     ++   + GdeR++sV ng++a ++e +++ +HD+ARpl++++ + ++++ a+  + +a+l +pvk t+k  +  + ++ t+dR+ Lw++qtPq  ++++l + +++ e +  e+tDd+s+ve+iG  vk+  Ge++nlK+ttpeD+++A  il+
  MMETSP0890-20130614|37646_1  29 VAVVLLAGGVGSRMKADRPKQFLELEGKPVLQHSLELFLSLEGIAKIVLVLDASYREEFSH----YDVSFADPGDERQDSVRNGFNACPNESRLICIHDSARPLVTPEAVYKVIEDARS-HGAAVLGVPVKATVKESQDGEFILRTIDRSRLWEVQTPQVIDRSILSEGFEAVEANNLEVTDDVSIVEQIGKPVKLTLGEYTNLKLTTPEDMIIASQILN 243
                  6899***********************************************9999787764....46889************************************************6.99****************888***************************************************************************9997 PP

>> PF12804.2  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   7.3e-18   2.5e-14       1     121 [.      31     151 ..      31     211 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 7.3e-18
                  EEEE----------..-GGG-B----BHHHHHHHHHTTS...EEEEE-SSHHHHHHHHTTS-S-EE--TT---------HHHHHH-...--EEEEETT..-TT--HHHHHHHHH--------EEEE CS
    PF12804.2   1 aviLAGGrSsRmgg..dKallplggkpllervldalraa.gvdevvvvtndeeieaaleglgvtvvededpgkgplaglaaalaaaegadavlvlacD..mPlltaellerllealaesgadvvvp 121
                  +v+LAGG +sRm+   +K++l+l gkp+l+++l+ + ++ g++++v+v +++  ++++++++v++   +dpg     +++ + +a+  ++  l++  D   Pl+t+e++ +++e ++++ga+v+ +
  MMETSP0890-20130614|37646_1  31 VVLLAGGVGSRMKAdrPKQFLELEGKPVLQHSLELFLSLeGIAKIVLVLDASY-REEFSHYDVSF---ADPGDERQDSVRNGFNAC-PNESRLICIHDsaRPLVTPEAVYKVIEDARSHGAAVLGV 151
                  69**********9556***********************66********9865.56799999999...456788889********9.677777888884469***************999988543 PP

>> PF00483.18  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.1e-07    0.0021       3      62 ..      32      88 ..      30      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.1e-07
                 EEE------------TTTS-GGG---CTT-HHHHHHHHHH..TT-SEEEEEEEGGGHHHHH CS
   PF00483.18  3 vILaGGsGtRLwPltrtlakklvpvlgkerliqytlsrlan.sgieeiivvltqehrflva 62
                 v+LaGG G+R+    ++  +k+++ l++++++q+ l+  ++ +gi +i++vl    r+++ 
  MMETSP0890-20130614|37646_1 32 VLLAGGVGSRM----KADRPKQFLELEGKPVLQHSLELFLSlEGIAKIVLVLDASYREEFS 88
                 89********9....67899999999999********988779*********999988775 PP

>> PF01704.13  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.3e-05      0.11      54      82 ..      26      54 ..      15      95 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.3e-05
                 TT-EEEEEEE----------S-----B-H CS
   PF01704.13 54 lnklavlkLnGglgtslGvkgpkslievr 82
                  + +av++L+Gg+g+++    pk  +e+ 
  MMETSP0890-20130614|37646_1 26 NDDVAVVLLAGGVGSRMKADRPKQFLELE 54
                 4679*********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.40s 00:00:00.90 Elapsed: 00:00:01.35
# Mc/sec: 443.77
//
Query:       MMETSP0890-20130614|37662_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      367  (0.0268432); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.92
# Mc/sec: 161.49
//
Query:       MMETSP0890-20130614|37660_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-11   41.7   0.0    4.5e-11   41.6   0.0    1.0  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.3e-15   4.5e-11       1      80 [.       4      90 ..       4     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 3.3e-15
                 EHHHHHHHHHHHHHHHH.H----TT-EEEEE-SSSHHHHHHHHHHHH---EEEE--TTS-H......HHHHHHHHHHTESEEEEESB CS
   PF00501.23  1 TYreldervnrlaagLr.klGvkpgdrVaillpnspewviaflaclkaGavyvplyptlpa......erlayilndseakvlitdde 80
                 T+ el+e+++ +a  +  +  v +gdrV++++  ++ +++af++cl+aG++ vp yp++p       e l+ +++ ++ak+++ d++
  MMETSP0890-20130614|37660_1  4 TFFELWEKSRVVAELMVdEWDVHRGDRVMLVMSFGLPFYAAFWGCLRAGIIGVPAYPPDPTrleravEKLNLVVSVCGAKLALEDSA 90
                 778********************************************************9877777778888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.34s 00:00:00.71 Elapsed: 00:00:01.55
# Mc/sec: 194.80
//
Query:       MMETSP0890-20130614|37661_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:00.84
# Mc/sec: 804.49
//
Query:       MMETSP0890-20130614|37669_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        88  (0.00643651); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         2  (0.000146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.34s 00:00:00.64 Elapsed: 00:00:00.60
# Mc/sec: 275.58
//
Query:       MMETSP0890-20130614|37655_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   37.5   0.0    5.7e-09   36.0   0.0    1.8  1  PF00169.24 PH domain
  ------ inclusion threshold ------
      0.059   12.7   0.4       0.11   11.9   0.3    1.3  1  PF07341.6  Protein of unknown function (DUF1473)


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   8.3e-13   5.7e-09       3     101 ..      47     147 ..      45     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 8.3e-13
                  BEEEEEEEETSSSCEEEEEEEEET..TEEEEESSSST...TCECSECEEEECGGEEEEEEEETTSSCTTSSSSEEEEEETTT.CEEEEEESSHHHHHHHHHHHHH CS
   PF00169.24   3 keGyllkksellktwkkryfvLts..nyLlyfksskk...ksykapkgsiplndctvkkasstkfalqkesnnyfeitfkdv.esyllsaeseeerkrWvqalkn 101
                    G+l kk++ + +wk+ryf+L +  + L y+   ++   +   +p g i l +++ +   ++     +++ ++f +t +++ e y+ +a +eeer+rWv+ ++ 
  MMETSP0890-20130614|37655_1  47 TRGWLWKKGHIRHNWKRRYFILSQdwTELKYYAGVSSsneQPIGEPLGRIVLGGASARLGLDY----IPKRAHVFSMTVRTKdEVYYCEAATEEERQRWVRTINT 147
                  67**********************997788887777544466677777788888888888887....59999999999999989******************986 PP

>> PF07341.6  Protein of unknown function (DUF1473)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   1.6e-05      0.11     102     150 ..     615     663 ..     598     671 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
    PF07341.6 102 kkpalvyleefedrvgdyvkydyiderfeydklitslksltlnsedsle 150
                   kp +  +e++++ +  yv+ d +++   y+  ++s+ks++ ++e+ ++
  MMETSP0890-20130614|37655_1 615 TKPNIEPIEQYDEVNNKYVENDNLNKPPAYENTVASTKSAAGEEEEEID 663
                  4888999********************************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       974  (0.0712405); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:01.15
# Mc/sec: 1398.56
//
Query:       MMETSP0890-20130614|37675_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   11.8   9.1       0.27   10.6   6.3    1.7  1  PF13441.1 YMGG-like Gly-zipper
       0.24   11.3   1.4       0.27   11.1   1.0    1.1  1  PF10190.4 Putative transmembrane protein 170
        2.1    8.3   4.5       0.47   10.3   0.7    1.7  2  PF06897.7 Protein of unknown function (DUF1269)
        4.4    6.9  12.0         15    5.2   8.3    1.9  1  PF13488.1 Glycine zipper
        9.1    5.8   7.9         11    5.6   5.4    1.3  1  PF13436.1 Glycine-zipper containing OmpA-like membrane domain


Domain annotation for each model (and alignments):
>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.3   9.8e-05      0.27       8      34 ..      22      57 ..      17      66 .] 0.66

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.8e-05
                 XXXXXXXXXXXXXXX...XXX--.........------- CS
    PF13441.1  8 aiGAaaGAaiGaaaG...gggkG.........AaiGAaa 34
                 a+GA +GA iGa++    +   G         Aa +A++
  MMETSP0890-20130614|37675_1 22 AVGALTGATIGAVSSalhS---GgvtkhmgprAAFMAIV 57
                 99*************7663...13445677776666655 PP

>> PF10190.4  Putative transmembrane protein 170
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   9.9e-05      0.27      41      91 ..      14      64 ..       9      66 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.9e-05
    PF10190.4 41 rllsivilvmGvlapltggvitsaava.gvyraagkemaplealvyGvgqtl 91
                  ++ i  + +G l+ +t g ++sa  + gv +  g + a + a+v+Gvg ++
  MMETSP0890-20130614|37675_1 14 GIMKIRAFAVGALTGATIGAVSSALHSgGVTKHMGPR-AAFMAIVLGVGAAI 64
                 6899*******************98762577777755.7799******9876 PP

>> PF06897.7  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7   0.00017      0.47      19      42 ..      22      45 ..      13      50 .. 0.83
   2 ?   -1.2   0.1      0.69   1.9e+03      15      30 ..      53      66 .]      51      66 .] 0.64

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
    PF06897.7 19 llGvavGAaagAlsgslsdvgidd 42
                  +G++ GA++gA+s++l   g+ +
  MMETSP0890-20130614|37675_1 22 AVGALTGATIGAVSSALHSGGVTK 45
                 48999***********99888865 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.69
    PF06897.7 15 flnpllGvavGAaagA 30
                 f+  +lG  vGAa+ A
  MMETSP0890-20130614|37675_1 53 FMAIVLG--VGAAIKA 66
                 6666777..7777655 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.3    0.0054        15       5      28 ..      23      55 ..      20      66 .] 0.46

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0054
    PF13488.1  5 iGAaaGAaiGaaag....ga.....gkGAliGA 28
                 +GA++GA iGa ++    g      g  A+  A
  MMETSP0890-20130614|37675_1 23 VGALTGATIGAVSSalhsGGvtkhmGPRAAFMA 55
                 677777777765543322223333433333333 PP

>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.4    0.0039        11      51      78 ..      20      48 ..       3      66 .] 0.62

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0039
    PF13436.1 51 saaegaavGaavGAaagaaagg.agagaa 78
                   a+ga++Ga++GA+ +a+  g  ++ ++
  MMETSP0890-20130614|37675_1 20 AFAVGALTGATIGAVSSALHSGgVTKHMG 48
                 45677777777777777744331333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:00.57
# Mc/sec: 272.69
//
Query:       MMETSP0890-20130614|37680_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-08   32.4   0.0      5e-08   32.3   0.0    1.2  1  PF09859.4 Uncharacterized protein conserved in bacteria (DUF2086)


Domain annotation for each model (and alignments):
>> PF09859.4  Uncharacterized protein conserved in bacteria (DUF2086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.6e-12     5e-08      65     113 ..       6      51 ..       1      82 [. 0.82

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.6e-12
    PF09859.4  65 lllkygegdynaLHqdlyGelvFPlqvvilLsepgedftGGefvlteqr 113
                  l l+yge++ n LHqd     + Plq+++l+s+p++df+GG + l + +
  MMETSP0890-20130614|37680_1   6 LALRYGENGENYLHQDQ---SIIPLQAIVLISQPKRDFNGGHLFLRKIK 51 
                  779*************5...79********************9997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       218  (0.015945); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.38s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 276.25
//
Query:       MMETSP0890-20130614|37664_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-07   29.9   9.3       0.83    9.6   0.0    5.3  5  PF02012.15 BNR/Asp-box repeat


Domain annotation for each model (and alignments):
>> PF02012.15  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00015         2       3      11 ..      71      79 ..      69      80 .. 0.86
   2 !    7.1   0.0   0.00041       5.6       2      11 ..     117     126 ..     116     127 .. 0.86
   3 !    7.2   0.1   0.00036         5       2      11 ..     160     169 ..     159     170 .. 0.85
   4 ?   -3.6   0.1         1   1.4e+04       9      11 ..     222     224 ..     222     225 .. 0.81
   5 !    9.6   0.0   6.1e-05      0.83       1      11 [.     313     323 ..     313     324 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00015
                 EST-----E CS
   PF02012.15  3 StDgGkTWs 11
                 + DgGk+W+
  MMETSP0890-20130614|37664_1 71 TIDGGKSWK 79
                 78******8 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00041
                  EEST-----E CS
   PF02012.15   2 yStDgGkTWs 11 
                  +++D Gk+W+
  MMETSP0890-20130614|37664_1 117 HTQDAGKSWE 126
                  589******8 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00036
                  EEST-----E CS
   PF02012.15   2 yStDgGkTWs 11 
                   +t+gG +W+
  MMETSP0890-20130614|37664_1 160 QTTNGGRNWK 169
                  59*******8 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 1
                  --E CS
   PF02012.15   9 TWs 11 
                  TW+
  MMETSP0890-20130614|37664_1 222 TWQ 224
                  9*8 PP

  == domain 5    score: 9.6 bits;  conditional E-value: 6.1e-05
                  EEEST-----E CS
   PF02012.15   1 yyStDgGkTWs 11 
                  y+S DgGkT++
  MMETSP0890-20130614|37664_1 313 YVSYDGGKTFK 323
                  89*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.71
# Mc/sec: 1228.55
//
Query:       MMETSP0890-20130614|37687_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      240  (0.0175541); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.92
# Mc/sec: 692.86
//
Query:       MMETSP0890-20130614|37692_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   12.7   0.2       0.17   11.8   0.1    1.5  1  PF11405.3 Bromelain inhibitor VI


Domain annotation for each model (and alignments):
>> PF11405.3  Bromelain inhibitor VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.2e-05      0.17      15      39 ..      67      92 ..      64      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.2e-05
    PF11405.3 15 PGfCkk.CkaefGkyiCLDLisPnDC 39
                 PGf ++ C+     y+CL L +Pn+C
  MMETSP0890-20130614|37692_1 67 PGFQRRiCRLYRDDYVCLQLPAPNNC 92
                 88875448999999************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       401  (0.02933); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.35s 00:00:00.82 Elapsed: 00:00:00.95
# Mc/sec: 499.45
//
Query:       MMETSP0890-20130614|37701_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   18.6   0.0      0.001   18.3   0.0    1.2  1  PF05057.9 Putative serine esterase (DUF676)


Domain annotation for each model (and alignments):
>> PF05057.9  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.3e-08     0.001     160     213 ..      10      55 ..       1      64 [. 0.86

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 7.3e-08
    PF05057.9 160 rdLflkddkdeknsllykllkdekdlkliealklFkrrvlyanvvndrivplas 213
                   +L l+d +  ++s+++kl+++         l+lFk++vl+a + +d++vp++s
  MMETSP0890-20130614|37701_1  10 EQLQLADADAPEKSYIFKLSQEPG-------LELFKQVVLVA-TRQDSYVPIYS 55 
                  589999*************88887.......99*********.88********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      153  (0.0111908); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 472.33
//
Query:       MMETSP0890-20130614|37710_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-38  130.8  50.4      1e-31  109.9  19.0    2.0  2  PF07690.11 Major Facilitator Superfamily
      2e-31  108.9  11.2    2.9e-31  108.4   7.8    1.2  1  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9  19.0   1.5e-35     1e-31      27     353 ..      84     430 ..      57     431 .. 0.79
   2 !   34.9  10.4   8.8e-13     6e-09      38     165 ..     327     461 ..     321     469 .. 0.83

  Alignments for each domain:
  == domain 1    score: 109.9 bits;  conditional E-value: 1.5e-35
   PF07690.11  27 lgispseigwlltlyslgyaiasllaGrlsdrfGrrr.vlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg.............WravFlilailsllaavlvllll.............prepperkrkspaeelrkepaplvp..........awklllkppvlwillialllfffvfsglltllplylqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvl.iGfglglvfptllalasdlappeerGtasglfntagslggalg 353
                  lg+ +  ++++ ++ ++g++++ l+ G++sd +  r+  +l +l l+  g+l++++ s+ + +l+++r+l+G+g ga++p   al+a+++p e+rg  + ++++++ +G+i++++l+ +++ s++             Wr   li+ + +l++a+ +  +l             +             e r+++ ++++          +   l++++ l+il i++ +  f+++gl+t++ +   +  g +   ++++    ++a+++++g +++ +l+d +gr++ l+ +++l++laal+la++  +   + l ++ ++ +  ++   +++l ++ ++++p+e r+ta+g+ +++g ++++++
  MMETSP0890-20130614|37710_1  84 LGLKKKYQSLISSGVYAGMLVGGLVSGYVSDLIRNRSeAFLRALYLATGGALCASL-SPGPIALFIFRALAGIGVGAATPPLFALAAEVSPIERRGGCITYVASFWMIGSIFAAGLAKIILRSANsldvswnytlderWRIYALICVLPALFSALAARRFLlstveplsrieydL------------CEDRQGEENIFEansiqranptIRPRLRHRKRLLILSITFWGLNFGYYGLSTWISVV-LDKVGVK-D-VYGV--ALMYAAANIPGNIAAFALVDSIGRKPLLVGSMALATLAALSLAYAIYYVPGLTLTIITAMiFNAAATSGWASLDSISAESFPAEDRATALGILTAVGRIASVIA 430
                  5566777899***********************99998777777777777566668.555668**********************************************************66667***************************9977777754444333333332............222333333333222222222334577777777789999999999***********7.8888888.3.3333..5555555555577777799*****************************555555554444155566666*******************************9997 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 8.8e-13
   PF07690.11  38 ltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfa....sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslg....WravFlilailslla 165
                  + +y+++ + +++ a +l+d +Gr+++l+ +++l+ l++l l++a    ++l+ l ++  ++  ++a +++++  ++ a+ fp e+r+ alg+l+a   ++++++  + g+l s+       +a+F++++  + l+
  MMETSP0890-20130614|37710_1 327 ALMYAAANIPGNIAAFALVDSIGRKPLLVGSMALATLAALSLAYAiyyvPGLT-LTIITAMIFNAAATSGWASLDSISAESFPAEDRATALGILTAVGRIASVIAQFVNGALQSNPPlllsVTAAFMFCGCCATLF 461
                  567999********************************777775446669999.56666666666667******************************************99866555555777777777655555 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   7.8   4.3e-35   2.9e-31      44     441 ..      87     468 ..      39     472 .] 0.82

  Alignments for each domain:
  == domain 1    score: 108.4 bits;  conditional E-value: 4.3e-35
   PF00083.19  44 ssvlsglivssflvgaliGslfaglladrfGRk.ksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsn..........adgwrillglqlvpallllllllflpeSpryl.vlkgkleeArevlkklrgsedadqeiqeekdslersreeeaswkelfsqktvrqrlligvvlqifqqltGinaimyYsptifetlglsksllvtiivgvvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpiiteaigggyvflvfagllvlfilfvfffvpetkg 441
                   + +++li s + +g l+G+l+ g+++d +  +  ++l al l   ga++  +++       l++ R+++G+gvG+++     +++E++p + rg ++++  +++ +G ++aa+++ ++ +++n          +++wri+  ++++pal+ +l+    +   r+l  +++ l++ +  l +    + + +e   e +s++r+++   ++++ ++    r+rlli   + + +++ ++   ++ s ++++++g+++ + v  ++ + n+   + a+ lvd +GR++ll+ ++a ++++a+ l+  ++ +v +    ++ +i+++++ +a+ + gw+++  ++++E fp++ R++al+i +a++ +a+++++++   + ++        v a+++  ++  ++f++ e k 
  MMETSP0890-20130614|37710_1  87 KKKYQSLISSGVYAGMLVGGLVSGYVSDLIRNRsEAFLRALYLATGGALCASLSP---GPIALFIFRALAGIGVGAATPPLFALAAEVSPIERRGGCITYVASFWMIGSIFAAGLAKIILRSANsldvswnytlDERWRIYALICVLPALFSALAA---R---RFLlSTVEPLSRIEYDLCE----DRQGEENIFEANSIQRANP---TIRPRLRH---RKRLLILSITFWGLNFGYYGLSTWIS-VVLDKVGVKDVYGVALMYAAANIPGNIAAFALVDSIGRKPLLVGSMALATLAALSLA-YAIYYVPG---LTLTIITAMIFNAAATS-GWASLD-SISAESFPAEDRATALGILTAVGRIASVIAQFVNGALQSNPP--LLLSVTAAFMFCGCCATLFGLRESKL 468
                  567899************************9998899999999999999999999...8************************************************************8888889999999999999999999999995444333...2...3441345555566666666....4444555555555555543...57888888...5599*999999999999988888887.578*****************************************************8.66666666...47777777766666666.****99.888*************************99999998888886..55566666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       454  (0.0332066); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:00.75
# Mc/sec: 1508.11
//
Query:       MMETSP0890-20130614|37716_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.80
# Mc/sec: 1090.34
//
Query:       MMETSP0890-20130614|37725_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   34.1   0.0    2.8e-08   33.3   0.0    1.4  1  PF07484.7 Phage Tail Collar Domain


Domain annotation for each model (and alignments):
>> PF07484.7  Phage Tail Collar Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.1e-12   2.8e-08       1      56 [.      78     130 ..      78     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 2.1e-12
                  --EEEESSSS-..SSTEEE-------TTT-HHHHHH-------.--S----------- CS
    PF07484.7   1 Geiipfagnfa..paGWllcdGqslsisqypaLfaliGttyGgdgqttfnlPDlrgrf 56 
                  G+ii+   +++  p+++l+cdG+ l++++yp+L++++       ++++  lPDlrgr+
  MMETSP0890-20130614|37725_1  78 GTIIASIVSSPdlPQNFLPCDGRRLNTKEYPKLATIMQ-----ASTQSITLPDLRGRT 130
                  6777777777777**********************886.....4899*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:01.12
# Mc/sec: 487.75
//
Query:       MMETSP0890-20130614|37734_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      340  (0.0248683); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:00.75
# Mc/sec: 514.42
//
Query:       MMETSP0890-20130614|37737_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   16.0   0.0      0.014   14.9   0.0    1.6  1  PF03567.9 Sulfotransferase family


Domain annotation for each model (and alignments):
>> PF03567.9  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-06     0.014      78     250 ..      94     272 ..      38     275 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-06
    PF03567.9  78 kyfkfifvRdPfeRllSayrnkcvgdkr..rgatwcgrlivckgr..........lpacyegddwsgvsfeeFleclsnlaperernnr.hwap.....acdlctrmladydlvgcyetle.edlnailrllallnlknvavfgltefprktqtanttrrsnstrasevevdlseklrqrleelYelDfelF 250
                  + + ++ vRdP+ R lS y +  vg+++  ++ +   ++++  ++           ++++ + ++ g  + e+ +++ +  +   +n r + +p      +d   + l ++d+v++ e++  +   ++l+ +  l+l  ++v+++ +  +      +  +s ++r +++ v   ++    le+l++lD +l+
  MMETSP0890-20130614|37737_1  94 SVITVVSVRDPVVRALSMYWYEHVGWWDgiQHDH---SKLRSLIDwiaewkdesvWKHKF-ATKNPGNVYIEIQNYMTKMLSG--WNQRgQGEPlddtfSLDHAINSLHRFDFVFVCERSRfSNHTKLLAFA--LSLDPQRVQSILKSDK-----LKADDSAKRRLAPKLVPDLDTASAILENLNHLDRRLY 272
                  3678999*********************644443...44555555666888876522222.2245667777777766666622..24445666655543334333566699999999998753333333322..2334444433333333.....3333446667777767777777788889999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:01.63
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|37748_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-25   87.3   0.1    1.2e-24   86.5   0.1    1.3  1  PF04042.11 DNA polymerase alpha/epsilon subunit B


Domain annotation for each model (and alignments):
>> PF04042.11  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   9.1e-29   1.2e-24      44     208 ..     262     451 ..     248     452 .. 0.90

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 9.1e-29
   PF04042.11  44 aahkarasskvsdeskenfdalalldsilesllesttvvlvPganDpasstilPqqPiprlllsrikrvfkvklvtNPsriein.svevvltsddivkdlkreslreknt.......................dvdrlrrlvktildqrhlaPlapdtlrpvpydeddafvlep...lPdvmvlgdelppfa 208
                  ++ + ++  +++++++++ + l+  d +l +l++  +v+l+Pg+  p++  +lPqqP+++lll++ +r+ +++ +tNP +  ++ s  +v+  ++ + d++++   ++                           d+++ +++ +l  rhlaP+apd+l ++p+  +d+fvl++   +P+v++ g  +++fa
  MMETSP0890-20130614|37748_1 262 SSSNGHNARNFTQSKDSSSQQLRDADIALARLSALLPVILIPGQHEPTNI-SLPQQPLHPLLLPNASRYDTFHTTTNPHESMLDdSFFIVGHAGQPIIDMLQHANYSSDAtaaldtrifpggdcicrdrkgdgPDDHFLAALEDTLYYRHLAPTAPDSLSSYPFAGSDPFVLDNdqpVPTVLFSGG-ASYFA 451
                  4556667777779*************************************.********************************9899999999998777766655554445*********************999*************************************5445599**99998.88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:01.01
# Mc/sec: 1183.94
//
Query:       MMETSP0890-20130614|37758_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-09   37.7   0.0    1.6e-09   37.5   0.0    1.1  1  PF01323.15 DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> PF01323.15  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.1e-13   1.6e-09      55     174 ..      60     180 ..      12     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.1e-13
                  TT...HHHHHHHHHHHHHT......TTCCT.HHHHHHHHHHHHHHHHGHHHHHHHHHHHHHTST---SSHHHHHHHHHH----HHHHHHHCTSHHHHHHHHHHHHHHHH.TT-----EEEE- CS
   PF01323.15  55 peklkylledlkrlaeaegiplrfpkdklk.nstraarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqs.lgvtGvPtvvvd 174
                   ++   + e +  l+++ gi l+ +    + +  + +r++l+a   g++e++  el+++ ++ gq  + + ++l++a++aGld+e+l+ +l++++ k +v ++    ++  g++ +P++v++
  MMETSP0890-20130614|37758_1  60 SQQRSIIEESMASLGKRVGIALNYNVRV-NwQPVDSQRAMLWASSFGQQEEFMDELAKRHFELGQSASHRTTILDAAKSAGLDVEALASFLDTDELKAHVWKSYGTMIRnKGIRAIPFFVFG 180
                  5666778899999********9998765.559999*****************************************************************9998776551689999998873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       291  (0.0212844); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 738.08
//
Query:       MMETSP0890-20130614|37763_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-44  147.2  11.2    3.8e-11   42.9   0.0    8.3  8  PF00415.13 Regulator of chromosome condensation (RCC1) repeat
    1.8e-36  122.8  32.7    2.4e-08   33.2   0.0    6.8  6  PF13540.1  Regulator of chromosome condensation (RCC1) repeat
     0.0066   16.0   6.9        3.4    7.3   0.0    4.8  5  PF13418.1  Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> PF00415.13  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.088     4e+02      32      50 ..      14      32 ..       2      33 .. 0.74
   2 !    6.5   0.0    0.0019       8.6      27      51 .]      60      80 ..      36      80 .. 0.75
   3 !   22.9   0.1   1.5e-08   6.6e-05       1      51 []      83     128 ..      83     128 .. 0.95
   4 !   42.4   0.1   1.2e-14   5.4e-11       1      51 []     131     179 ..     131     179 .. 0.97
   5 !   42.9   0.0   8.3e-15   3.8e-11       4      51 .]     186     233 ..     185     233 .. 0.96
   6 !   15.5   0.0     3e-06     0.014       3      23 ..     238     259 ..     236     282 .. 0.78
   7 !    7.2   0.0    0.0012       5.3      21      46 ..     305     330 ..     301     332 .. 0.89
   8 !    7.8   0.0   0.00072       3.3       1      19 [.     344     361 ..     344     373 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.088
                 GG------EEE-----EEE CS
   PF00415.13 32 glsgvrvvqvacGgsHtla 50
                 + +g  +++v++G+  t++
  MMETSP0890-20130614|37763_1 14 FETGDDIISVSAGWCCTVV 32
                 344478*******988875 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0019
                 -EE-GGG------EEE-----EEEE CS
   PF00415.13 27 PvkveglsgvrvvqvacGgsHtlal 51
                 P  ++ l+  r+  va+G++H lal
  MMETSP0890-20130614|37763_1 60 P--LSNLN--RIHLVAAGARHALAL 80
                 3..44455..5***********997 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 1.5e-08
                  TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                  +G+ +sWG+ d+G+LG      + l P +v+  +     ++++G+ H+l++
  MMETSP0890-20130614|37763_1  83 NGQAWSWGCEDDGRLG---RFGSGLLPARVKIDNV--LRAMSAGACHSLFV 128
                  699*************...9***************..**********9976 PP

  == domain 4    score: 42.4 bits;  conditional E-value: 1.2e-14
                  TTEEEEE---------.--------S-EE-GGG------EEE-----EEEE CS
   PF00415.13   1 dGrVysWGrndyGqLGkggseenvlvPvkveglsgvrvvqvacGgsHtlal 51 
                  dG++y+ G++ +G+LG +g+een+l P++v++    +v +va+G +H+l+l
  MMETSP0890-20130614|37763_1 131 DGQLYATGFGGNGRLG-LGNEENQLLPTLVPLIGF-NVCAVAAGKYHSLVL 179
                  9***************.***********9999999.************986 PP

  == domain 5    score: 42.9 bits;  conditional E-value: 8.3e-15
                  EEEE---------.--------S-EE-GGG--.----EEE-----EEEE CS
   PF00415.13   4 VysWGrndyGqLGkggseenvlvPvkveglsg.vrvvqvacGgsHtlal 51 
                  ++++G n yGqLG +g+ +++l P ++ gl++ + ++q+a+G+ H+l+l
  MMETSP0890-20130614|37763_1 186 LFAFGDNAYGQLG-LGHDNEQLLPAQIFGLPKsQCIKQIAAGAAHSLIL 233
                  8************.************9999999*************986 PP

  == domain 6    score: 15.5 bits;  conditional E-value: 3e-06
                  EEEEE---------..------ CS
   PF00415.13   3 rVysWGrndyGqLG.kggseen 23 
                  +++++G+nd GqLG +++s+++
  MMETSP0890-20130614|37763_1 238 DIWGFGNNDVGQLGlQTPSSDD 259
                  69************74444444 PP

  == domain 7    score: 7.2 bits;  conditional E-value: 0.0012
                  -----S-EE-GGG------EEE---- CS
   PF00415.13  21 eenvlvPvkveglsgvrvvqvacGgs 46 
                  +++ ++Pv++  l g ++vq+a+G++
  MMETSP0890-20130614|37763_1 305 NQEFWIPVRLDPLCGLNAVQIAAGSD 330
                  567799******************86 PP

  == domain 8    score: 7.8 bits;  conditional E-value: 0.00072
                  TTEEEEE---------.-- CS
   PF00415.13   1 dGrVysWGrndyGqLGkgg 19 
                  dG V s+G  ++Gq+G  g
  MMETSP0890-20130614|37763_1 344 DGTVVSCGSQNNGQCG-RG 361
                  89999***********.55 PP

>> PF13540.1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.4    0.0044        20       1      22 [.      20      41 ..      20      43 .. 0.94
   2 !   30.9   0.7   2.8e-11   1.3e-07       4      29 ..      70      95 ..      67      96 .. 0.95
   3 !   19.4   0.2   1.1e-07    0.0005       3      29 ..     117     143 ..     115     144 .. 0.90
   4 !   28.3   0.1   1.8e-10   8.4e-07       1      30 []     166     196 ..     166     196 .. 0.96
   5 !   33.2   0.0   5.3e-12   2.4e-08       1      30 []     220     249 ..     220     249 .. 0.98
   6 !   24.0   2.4     4e-09   1.8e-05       9      30 .]     336     357 ..     322     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0044
                 --EEE-----EEEE-.---EEE CS
    PF13540.1  1 VvsvsaGgyHtcaLtsdGaVlc 22
                 ++svsaG+  t++ t+ G+V++
  MMETSP0890-20130614|37763_1 20 IISVSAGWCCTVVATRRGRVYA 41
                 79******************96 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 2.8e-11
                 EE-----EEEE-.---EEEE---TTS CS
    PF13540.1  4 vsaGgyHtcaLtsdGaVlcWGsNssG 29
                 v+aG++H++aL+++G+ ++WG+ ++G
  MMETSP0890-20130614|37763_1 70 VAAGARHALALDTNGQAWSWGCEDDG 95
                 9***********************99 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 1.1e-07
                  EEE-----EEEE-.---EEEE---TTS CS
    PF13540.1   3 svsaGgyHtcaLtsdGaVlcWGsNssG 29 
                  ++saG+ H++++  dG+++++G +++G
  MMETSP0890-20130614|37763_1 117 AMSAGACHSLFVSKDGQLYATGFGGNG 143
                  78********************77766 PP

  == domain 4    score: 28.3 bits;  conditional E-value: 1.8e-10
                  --EEE-----EEEE-.---.EEEE---TTST CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGa.VlcWGsNssGQ 30 
                  V +v+aG yH+++L + G+ ++++G+N +GQ
  MMETSP0890-20130614|37763_1 166 VCAVAAGKYHSLVLCDRGTkLFAFGDNAYGQ 196
                  679***************************9 PP

  == domain 5    score: 33.2 bits;  conditional E-value: 5.3e-12
                  --EEE-----EEEE-.---EEEE---TTST CS
    PF13540.1   1 VvsvsaGgyHtcaLtsdGaVlcWGsNssGQ 30 
                  +++++aG+ H+++L++d +++++G+N++GQ
  MMETSP0890-20130614|37763_1 220 IKQIAAGAAHSLILLEDSDIWGFGNNDVGQ 249
                  79***************************9 PP

  == domain 6    score: 24.0 bits;  conditional E-value: 4e-09
                  --EEEE-.---EEEE---TTST CS
    PF13540.1   9 yHtcaLtsdGaVlcWGsNssGQ 30 
                   Ht++Lt+dG+V+++Gs ++GQ
  MMETSP0890-20130614|37763_1 336 GHTLVLTADGTVVSCGSQNNGQ 357
                  57*******************9 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00075       3.4       3      24 ..      27      47 ..      25      69 .. 0.85
   2 !    4.1   0.2    0.0076        35       3      19 ..     122     138 ..     120     146 .. 0.86
   3 ?    3.2   0.0     0.014        66       4      19 ..     174     190 ..     171     190 .. 0.88
   4 ?   -2.6   0.0      0.97   4.4e+03       5      19 ..     229     243 ..     227     243 .. 0.85
   5 ?    1.2   0.1     0.062   2.8e+02       4      16 ..     336     348 ..     335     358 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00075
    PF13418.1  3 aghsavavpdgrlylfGGened 24
                 +++++va+++gr+y  GG  e+
  MMETSP0890-20130614|37763_1 27 WCCTVVATRRGRVY-AGGLVEN 47
                 89************.9998877 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0076
    PF13418.1   3 aghsavavpdgrlylfG 19 
                  a+hs++  +dg ly +G
  MMETSP0890-20130614|37763_1 122 ACHSLFVSKDGQLYATG 138
                  89************887 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.014
    PF13418.1   4 ghsavavpdgr.lylfG 19 
                  +hs+v +++g+ l+ fG
  MMETSP0890-20130614|37763_1 174 YHSLVLCDRGTkLFAFG 190
                  9******9987699998 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.97
    PF13418.1   5 hsavavpdgrlylfG 19 
                  hs++ + d  ++ fG
  MMETSP0890-20130614|37763_1 229 HSLILLEDSDIWGFG 243
                  999999999999776 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.062
    PF13418.1   4 ghsavavpdgrly 16 
                  gh++v ++dg+++
  MMETSP0890-20130614|37763_1 336 GHTLVLTADGTVV 348
                  8********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.40s 00:00:01.08 Elapsed: 00:00:00.74
# Mc/sec: 1243.51
//
Query:       MMETSP0890-20130614|37766_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 1377.91
//
Query:       MMETSP0890-20130614|37773_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-07   28.8   0.0    1.8e-06   28.0   0.0    1.5  1  PF11543.3  Nuclear pore localisation protein NPL4
     0.0077   15.6  23.1      0.022   14.1   0.9    5.9  6  PF02809.15 Ubiquitin interaction motif
  ------ inclusion threshold ------
      0.021   14.3   0.2      0.095   12.2   0.0    2.3  2  PF00564.19 PB1 domain


Domain annotation for each model (and alignments):
>> PF11543.3  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.9e-10   1.8e-06       7      79 ..       2      70 ..       1      71 [. 0.93

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.9e-10
                 -EEE-----EE----SS--HHHHHHHHHHH------------S-------SS----TTTTT-------EE--- CS
    PF11543.3  7 iRvqSadGikRieisekstlktllekvaeelkfsnngfslylernkttelvssssksvkevklkhGdmlyLkk 79
                 iRv+ + G+ R++++e+ tl  l ekv+e+++ +    +l+l+   ++ l+   s+ +  ++l+hG+m+  ++
  MMETSP0890-20130614|37773_1  2 IRVRHSGGTFRVSLEEDATLGLLREKVKEKIGND---VALSLDPAGSQPLE-PTSELITMLGLEHGTMVHVQP 70
                 9******************************965...*************6.889999***********8775 PP

>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.44     2e+03      11      17 ..      11      17 ..      10      17 .. 0.85
   2 ?   -0.6   0.0      0.27   1.2e+03       2       9 ..     153     160 ..     152     160 .. 0.88
   3 ?    3.7   0.4     0.011        50       1      11 [.     243     253 ..     243     264 .. 0.90
   4 !   14.1   0.9   4.9e-06     0.022       3      17 ..     269     283 ..     267     284 .. 0.86
   5 ?   -1.1   0.0      0.38   1.7e+03       4      11 ..     313     320 ..     313     320 .. 0.88
   6 !    8.6   1.0   0.00029       1.3       3      14 ..     337     348 ..     335     352 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.44
                 HHHHHHH CS
   PF02809.15 11 LalSlee 17
                  ++Slee
  MMETSP0890-20130614|37773_1 11 FRVSLEE 17
                 689***8 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.27
                  CCHHHHHH CS
   PF02809.15   2 sEEedLql 9  
                  ++++d+++
  MMETSP0890-20130614|37773_1 153 QDDADIAR 160
                  79****98 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.011
                  CCCHHHHHHHH CS
   PF02809.15   1 msEEedLqlAL 11 
                  +++++ Lq+A+
  MMETSP0890-20130614|37773_1 243 DDDDAALQAAI 253
                  69********8 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 4.9e-06
                  CHHHHHHHHHHHHHH CS
   PF02809.15   3 EEedLqlALalSlee 17 
                  ++ +L++ALa+S++ 
  MMETSP0890-20130614|37773_1 269 DDGELARALAMSMAQ 283
                  6779*********86 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.38
                  HHHHHHHH CS
   PF02809.15   4 EedLqlAL 11 
                  ++dLq AL
  MMETSP0890-20130614|37773_1 313 DPDLQSAL 320
                  89***887 PP

  == domain 6    score: 8.6 bits;  conditional E-value: 0.00029
                  CHHHHHHHHHHH CS
   PF02809.15   3 EEedLqlALalS 14 
                  EEe+L +A+alS
  MMETSP0890-20130614|37773_1 337 EEEELEKAIALS 348
                  9*********** PP

>> PF00564.19  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.1e-05     0.095       4      40 ..       2      36 ..       1      43 [. 0.89
   2 ?   -3.3   0.1       1.5   6.8e+03      59      71 ..     112     124 ..     112     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.1e-05
                 EEEEETTEEEEEEEETSSS-HHHHHHHHHHHCTB-GS CS
   PF00564.19  4 lKlrykgdirrilsvssnisfeeLrskveqrfklsde 40
                 +++r+ g+++r +s++++ ++  Lr+kv+++++ + +
  MMETSP0890-20130614|37773_1  2 IRVRHSGGTFR-VSLEEDATLGLLREKVKEKIGND-V 36
                 799********.********************985.3 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.5
                  HHHHHHHHHHHHH CS
   PF00564.19  59 deDLkeaveears 71 
                  d++++ea+  ar 
  MMETSP0890-20130614|37773_1 112 DAEMEEAIAIARA 124
                  8899***999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 1204.84
//
Query:       MMETSP0890-20130614|37786_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-27   95.0   0.3    4.6e-27   94.5   0.2    1.2  1  PF04042.11 DNA polymerase alpha/epsilon subunit B


Domain annotation for each model (and alignments):
>> PF04042.11  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.2   3.3e-31   4.6e-27      34     208 ..      15     228 ..       5     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 3.3e-31
   PF04042.11  34 rlilaGnflsaahkarasskvs..deskenfdalalldsilesll...esttvvlvPganDpass..tilPqqPiprl....llsrikrvfk...vklvtNPsriein.svevvltsddivkdlkreslreknt........................dvdrlrrlvktildqrhlaPlapdtlrpvpydeddafvleplPdvmvlgd.elppfa 208
                  +li++G f+s++++a a++  s  +   e    l++   ++++++   ++ t+++vPg++D  +    +lP++ +p+     ++++i+r ++   v+  t P+r+++  + e+ + ++d++k+l+r s r   +                          +   +l+kti+dq hlaP++  +l p+ +++d+a+ l+p P++++l+d  +p+f 
  MMETSP0890-20130614|37786_1  15 VLIICGDFTSIKAEAPAHAVRSvqARFAELATLLSSPEFDINNTTpllAHLTIIFVPGPRDLVCGpnRLLPRDKLPDSilqpFFDKIQRRCPqslVIASTTPCRLQTPfGNEIIIHRQDTLKKLRRLSARLLPShfignkstsaresptgveqdqnhhFDNPGPHLAKTIIDQAHLAPFSL-SLAPIYWEYDHALRLYPSPNALILADdSAPRFN 228
                  79********999988777554333333333333333344555546669**************99999*****9999855567899999999**************987********************************************987754455679****************.**************************8888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.36s 00:00:00.89 Elapsed: 00:00:00.59
# Mc/sec: 1076.33
//
Query:       MMETSP0890-20130614|37780_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.6   0.0    2.1e-08   33.9   0.0    1.5  1  PF09229.6  Activator of Hsp90 ATPase, N-terminal
    3.8e-06   26.2   0.1     0.0005   19.7   0.1    2.8  2  PF13516.1  Leucine Rich repeat
     0.0032   16.9   0.1      0.018   14.5   0.1    2.2  1  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.013   15.1   0.0        5.3    6.7   0.0    2.5  2  PF13855.1  Leucine rich repeat
      0.062   13.2   0.2       0.98    9.5   0.1    2.8  2  PF00560.28 Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> PF09229.6  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   7.6e-12   2.1e-08       1      97 [.      13     111 ..      13     169 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 7.6e-12
                  -EE-HHHHHHHHHHHHHT-EE.E-SSEEEEEEEEE.EE-EEEEEE----EEEEEEEEEEEEEEEEETT---..EE----EEEEEEECCCCTT----EE- CS
    PF09229.6   1 eKdatkwakeklkellknlkvkedeeskikitevskveGdasvsqrKGKkiflfelklklewegekkeeee..kkvkGtveipelsseneeedyeieik 97 
                  e+d+t w +++l+ ++++ +  ++e +ki++ e    +G++    rK+ +++++ l+l ++w ++   ++    +++G ++i +++s+ +ee+y ++ +
  MMETSP0890-20130614|37780_1  13 ERDLTAWIRQWLEMNINDATLIDNEAHKIRCRESYRDDGECVLQSRKNEMFVVYGLDLIVKWYAQRRLGDRvlGEARGRIQITNFCSTLDEEEYIVQGE 111
                  8*******************6699999**************************************8777777789****************99988765 PP

>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.8e-07    0.0005       2      22 ..     270     290 ..     269     296 .. 0.80
   2 ?    3.4   0.0     0.034        93       2      16 ..     300     314 ..     299     325 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.8e-07
    PF13516.1   2 knLtsLdLsnNqigdeGlsaL 22 
                  k LtsLdLs+N i+d Gl+ L
  MMETSP0890-20130614|37780_1 270 KDLTSLDLSYNEITDAGLQPL 290
                  569**************9633 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.034
    PF13516.1   2 knLtsLdLsnNqigd 16 
                  ++L++L++ +++++d
  MMETSP0890-20130614|37780_1 300 PSLRTLRFDQTKLSD 314
                  89**********998 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   6.8e-06     0.018       3      39 ..     272     315 ..     270     325 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.8e-06
    PF12799.2   3 LevLdLsnNnIkd..lppelanL.....pnLktLnLsnNpisdl 39 
                  L++LdLs+N I+d  l p l  L     p+L+tL  + +++sd+
  MMETSP0890-20130614|37780_1 272 LTSLDLSYNEITDagLQPLLCALatgaaPSLRTLRFDQTKLSDV 315
                  899*********877888778875555579****9999999997 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0044        12      26      38 ..     271     283 ..     267     289 .. 0.69
   2 ?    6.7   0.0    0.0019       5.3       1      28 [.     300     327 ..     295     329 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0044
    PF13855.1  26 nLkvLdLsgnnlk 38 
                   L++LdLs+n+++
  MMETSP0890-20130614|37780_1 271 DLTSLDLSYNEIT 283
                  5667777777766 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0019
    PF13855.1   1 pnLkeLdLsnNrlkvipdgaFkglsnLk 28 
                  p+L++L  ++++l+++++  F gl++ +
  MMETSP0890-20130614|37780_1 300 PSLRTLRFDQTKLSDVAKKQFIGLTSIR 327
                  6778888888888888877777777654 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00036      0.98       2      18 ..     272     290 ..     271     294 .. 0.80
   2 ?   -0.1   0.0      0.52   1.4e+03       1      17 [.     301     317 ..     301     331 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00036
                  ESEEEETSSBCBC..HHHH CS
   PF00560.28   2 LeeLdLsgNnlts..lpps 18 
                  L++LdLs+N +t+  l+p 
  MMETSP0890-20130614|37780_1 272 LTSLDLSYNEITDagLQPL 290
                  99**********8676664 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.52
                  TESEEEETSSBCBCHHH CS
   PF00560.28   1 nLeeLdLsgNnltslpp 17 
                  +L++L ++ ++l+++ +
  MMETSP0890-20130614|37780_1 301 SLRTLRFDQTKLSDVAK 317
                  6999*999999998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.91
# Mc/sec: 908.51
//
Query:       MMETSP0890-20130614|37807_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-11   41.3   0.2    0.00028   19.8   0.0    2.4  2  PF00036.27 EF hand
    4.3e-10   39.4   0.1    6.7e-10   38.8   0.0    1.3  1  PF13499.1  EF-hand domain pair
    1.4e-09   36.8   0.2    0.00073   19.1   0.0    2.4  2  PF13405.1  EF-hand domain
    5.5e-09   34.8   0.1     0.0021   17.1   0.2    2.4  2  PF13202.1  EF hand
    7.8e-06   25.3   0.1      0.041   13.3   0.1    2.3  2  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-07   0.00028       5      23 ..      27      45 ..      25      51 .. 0.89
   2 !   18.9   0.4     2e-07   0.00054       4      26 ..      66      88 ..      65      90 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1e-07
                 HHHHHCTTTSSEBEHHHHH CS
   PF00036.27  5 aFkefDkDgdGkIsfeEfk 23
                 aF++fDk+++G+I++ E++
  MMETSP0890-20130614|37807_1 27 AFALFDKNQTGHITVAELC 45
                 8****************98 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2e-07
                 HHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  4 eaFkefDkDgdGkIsfeEfkeal 26
                 e+F+ +D Dgd  Is +Ef++++
  MMETSP0890-20130614|37807_1 66 EIFQALDLDGDAIISRDEFIQVI 88
                 8******************9986 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.5e-13   6.7e-10       4      65 ..      26      87 ..      19      88 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.5e-13
    PF13499.1  4 eaFkllDkdgdgyldkeeLlrllkhlgsels..deevre.vldyifkelDkngdGvlsfeEflqa 65
                 +aF l+Dk+++g+++++eL   +++++se++    ++ + +  +if+ lD++gd  +s++Ef q 
  MMETSP0890-20130614|37807_1 26 TAFALFDKNQTGHITVAELCFTARKTNSEHRrrG-SLYNeM--EIFQALDLDGDAIISRDEFIQV 87
                 48*************************8888743.333334..67*****************986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.7e-07   0.00073       5      26 ..      27      48 ..      25      58 .. 0.88
   2 !   15.5   0.2   3.8e-06      0.01       4      27 ..      66      89 ..      63      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.7e-07
                 --GCC-------B---HHHHHH CS
    PF13405.1  5 aFklfDkdgdGkidaeELrdaL 26
                 aF lfDk+++G i+ +EL    
  MMETSP0890-20130614|37807_1 27 AFALFDKNQTGHITVAELCFTA 48
                 8****************97655 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.8e-06
                 ---GCC-------B---HHHHHHH CS
    PF13405.1  4 eaFklfDkdgdGkidaeELrdaLr 27
                 e+F+++D dgd  i+++E+++++ 
  MMETSP0890-20130614|37807_1 66 EIFQALDLDGDAIISRDEFIQVIG 89
                 89*******************987 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.4e-06    0.0094       4      21 ..      27      44 ..      25      50 .. 0.93
   2 !   17.1   0.2   7.7e-07    0.0021       4      24 ..      67      87 ..      65      88 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.4e-06
                 HHHHH--S----B-HHHH CS
    PF13202.1  4 tFrafDlNgDGkIsreEL 21
                 +F  fD+N  G I+  EL
  MMETSP0890-20130614|37807_1 27 AFALFDKNQTGHITVAEL 44
                 59***************8 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 7.7e-07
                 HHHHH--S----B-HHHHHHH CS
    PF13202.1  4 tFrafDlNgDGkIsreELkrl 24
                 +F+a+Dl+gD  Isr+E+ ++
  MMETSP0890-20130614|37807_1 67 IFQALDLDGDAIISRDEFIQV 87
                 6*****************886 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0002      0.55      30      50 ..      27      47 ..      25      51 .. 0.87
   2 !   13.3   0.1   1.5e-05     0.041      30      49 ..      67      86 ..      65      88 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
    PF13833.1 30 lfrefDtdgdGkisfeEFcvl 50
                  f +fD ++ G i+ +E c+ 
  MMETSP0890-20130614|37807_1 27 AFALFDKNQTGHITVAELCFT 47
                 5999***************86 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.5e-05
    PF13833.1 30 lfrefDtdgdGkisfeEFcv 49
                 +f ++D+dgd +is +EF++
  MMETSP0890-20130614|37807_1 67 IFQALDLDGDAIISRDEFIQ 86
                 89****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.91
# Mc/sec: 305.47
//
Query:       MMETSP0890-20130614|37802_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-14   52.0  15.9    4.5e-13   48.7  11.1    2.4  1  PF13367.1  Protease prsW family
    0.00027   20.1  10.0     0.0003   19.9   2.5    2.2  2  PF10086.4  Putative membrane peptidase family (DUF2324)
  ------ inclusion threshold ------
      0.039   13.6   0.1      0.064   12.9   0.1    1.3  1  PF08428.5  Rib/alpha-like repeat
        1.4    8.6   7.1         21    4.9   0.5    2.8  2  PF04854.9  Protein of unknown function, DUF624


Domain annotation for each model (and alignments):
>> PF13367.1  Protease prsW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7  11.1   1.3e-16   4.5e-13      12     178 ..     164     349 ..     103     361 .. 0.74

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.3e-16
    PF13367.1  12 wGalvavliallln.tllqqll........aesgsagsellaaflvaglvEElaKalgvllllllrrrefdepldgivyGaavGlGFavlEnilylvralpeagnagletailRallsvfgHalftaitGyglglak.............rrrk.......akr.lllllglllavllHalwNlllsl.sgl......llilvl 178
                  + ++ +++++ +l  +     l        + s ++++ +++af+ agl EE++K ++v  ll+  ++++      ivy++ +G+ F v+Eni+y++          l++a++R ll+v++H+ ++  +G+ ++ ++             ++++           + +++   la+++H+++N++l + sg       l    +
  MMETSP0890-20130614|37802_1 164 LIIIPLTIAISILDyY-----LpmrdscqaSRSIPFWRYFFMAFIRAGLLEETLKYIAVRRLLF--KEYVIDARCLIVYATWAGVVFGVIENITYAF-------ILPLGAAVIRCLLTVPLHGSTGLNIGANIVSFRfqqppsddlalipSQNDvqykggfFYHlRTYIVSTWLAIVVHGIYNVMLFIaSGEcgalysL----I 349
                  3333333312222222.....23334567778899***************************94..56665556688*******************6.......245778********************8888888667776666655522224433443222455555555*************9955546533321....2 PP

>> PF10086.4  Putative membrane peptidase family (DUF2324)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   2.5   8.8e-08    0.0003       2     118 ..     129     257 ..     128     268 .. 0.69
   2 !    3.9   0.3    0.0069        23     188     215 ..     318     345 ..     312     354 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 8.8e-08
    PF10086.4   2 lallPvl.llvflrk.klklslrvfllGalvFvlfaivl....elplvlivlqqnaatlealshp.llyvlylaLvAGifEEvgRylalr.lllkkrkskkd....talayGlGhGgiEalLvgllsll 118
                  lal P+  +++f++k  +++  r  l+ +++ vl  i++     + ++++ l      ++  s p + y++++ + AG++EE+ +y+a+r ll+k++  +++    +a  +G+ +G iE++ ++ +  l
  MMETSP0890-20130614|37802_1 129 LALSPASvIWAFIEKwYKRYVTRCTLFDVAAEVLLLIIIpltiAISILDYYLPMRDSCQASRSIPfWRYFFMAFIRAGLLEETLKYIAVRrLLFKEYVIDARclivYATWAGVVFGVIENITYAFILPL 257
                  566777767777776533455666666666666666666333355555555555555555556661568999999*************97366788888888*****************9988776554 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0069
    PF10086.4 188 lvylllAillHalvDlpaalyqagvlan 215
                  +v  +lAi++H++++++ ++++    a 
  MMETSP0890-20130614|37802_1 318 IVSTWLAIVVHGIYNVMLFIASGECGAL 345
                  56679***********977776655444 PP

>> PF08428.5  Rib/alpha-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.9e-05     0.064      37      63 ..      28      54 ..       6      56 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
    PF08428.5 37 tpGekeatVvVtYPDGSkdeVeVtVkV 63
                 +pG+ ++ +   YPD S+ e++V+V V
  MMETSP0890-20130614|37802_1 28 PPGTTPGSIIRAYPDASRPELAVEVAV 54
                 68***********************99 PP

>> PF04854.9  Protein of unknown function, DUF624
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.5     0.012        41      11      57 ..     103     149 ..     100     156 .. 0.76
   2 ?    4.9   0.5    0.0062        21      12      52 ..     156     202 ..     135     207 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.012
    PF04854.9  11 ftllglvvfgigpAtaAlfavvrkwirkeedssllktFwsaykknfk 57 
                  f+ + ++v+gi+ A++A+           + +s++  F++ + k ++
  MMETSP0890-20130614|37802_1 103 FSCAYCFVVGIFTAFSAVLGAACLAFLALSPASVIWAFIEKWYKRYV 149
                  67899************998776666666677777777777766665 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0062
    PF04854.9  12 t......llglvvfgigpAtaAlfavvrkwirkeedssllktFwsay 52 
                         ll +++++i+ ++   +  +r+  +    ++ ++ F+ a+
  MMETSP0890-20130614|37802_1 156 DvaaevlLLIIIPLTIAISILDYYLPMRDSCQASRSIPFWRYFFMAF 202
                  05555548888889999999999999********9999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       877  (0.0641457); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.37s 00:00:01.18 Elapsed: 00:00:00.93
# Mc/sec: 1051.31
//
Query:       MMETSP0890-20130614|37819_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   36.5   0.0    1.9e-09   36.3   0.0    1.0  1  PF00501.23 AMP-binding enzyme
  ------ inclusion threshold ------
       0.08   12.1   0.0       0.12   11.5   0.0    1.3  1  PF12841.2  YvrJ protein family


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.7e-13   1.9e-09     361     418 .]      18      75 ..      13      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.7e-13
                  CCSTTEEE---EEEE-TT--EEEE--GGGEEE--.--EEEHHHHHHHHH.TSTTEEEEEE CS
   PF00501.23 361 dedgwlyrTGDlgrldedGyleiiGRkkdqikir.GeniepgeiEsall.ehpgvaeaaV 418
                  +edgw yrTGD+g++ +   l++i+R+   ik++ G+  +p+ +E+ l   ++ + e+aV
  MMETSP0890-20130614|37819_1  18 VEDGW-YRTGDIGEFID-EKLRVIDRVGAGIKLQnGKFLSPARLEAKLEaLSDSIIECAV 75 
                  79***.***********.***************66*************955566666666 PP

>> PF12841.2  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.8e-05      0.12      19      33 ..      58      72 ..      57      76 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.8e-05
    PF12841.2 19 RiEkkldaLtksIne 33
                 R+E kl+aL++sI e
  MMETSP0890-20130614|37819_1 58 RLEAKLEALSDSIIE 72
                 9************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.76
# Mc/sec: 255.40
//
Query:       MMETSP0890-20130614|37826_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.93
# Mc/sec: 159.76
//
Query:       MMETSP0890-20130614|37821_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-28  100.0   0.0    1.6e-28   99.8   0.0    1.1  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   1.2e-32   1.6e-28      10     154 ..      27     184 ..      16     186 .. 0.73

  Alignments for each domain:
  == domain 1    score: 99.8 bits;  conditional E-value: 1.2e-32
                  XXXXXXXXXXX.---..............-TTTTT--------TTT------------------S--TT--.STT--......-.....--.--S-TT.THHHH---HHHHHHHHTT-----------------------------------STTT----TTTTT------ CS
   PF00504.16  10 pgdlgfDplglskdp..............tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpawaeag......g.....ls.lptllalqillligflelareqelkapesegsekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvq 154
                  +gd  fDplgl++                + ++lre+El+H+RvAMla++Ga+v+  + ++++ s f +   ++e g      +     ++  p+ +a qil++i ++e +   ++++   +g+++ra pG++g ++++     ++    +lkE+knGRlAMi+++g+  +
  MMETSP0890-20130614|37821_1  27 TGDKVFDPLGLAQIHglikddeehfgvwpSPQWLRESELKHCRVAMLAFVGAIVQSTGVHFPG-SLFGQ---YYEGGknfisgEalasaFKtCPSGMA-QILVTIWLIESK---NFPDGAWMGYMDRA-PGDFGLNFFNA----KNDPAAQLKELKNGRLAMIGIIGLSSA 184
                  35556******94336777779**********************************9988554.22222...22222222222223222233555555.**********96...44544556677777.***99999875....56677899***************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.37s 00:00:00.80 Elapsed: 00:00:00.76
# Mc/sec: 627.47
//
Query:       MMETSP0890-20130614|37829_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       324  (0.0236981); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:00.81
# Mc/sec: 334.31
//
Query:       MMETSP0890-20130614|37822_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-14   52.4   6.3    2.2e-10   39.8   1.4    2.5  2  PF13414.1  TPR repeat
    3.1e-09   35.9   4.5     0.0016   17.8   0.9    3.5  3  PF00515.23 Tetratricopeptide repeat
    7.5e-06   25.3   4.3       0.41   10.5   0.0    3.7  3  PF07719.12 Tetratricopeptide repeat
    2.5e-05   24.7   5.1       0.01   16.3   0.4    2.5  2  PF13432.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   14.9   3.1       0.12   12.1   2.0    2.5  2  PF13371.1  Tetratricopeptide repeat
       0.48   10.1   6.8      0.087   12.5   0.9    2.4  2  PF03766.8  Remorin, N-terminal region
       0.87   10.2   4.8         15    6.4   0.2    3.3  3  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   1.4   1.1e-13   2.2e-10       3      69 .]     233     297 ..     231     297 .. 0.95
   2 !   22.6   0.1   2.7e-08   5.3e-05      20      65 ..     283     327 ..     282     331 .. 0.94

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.1e-13
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  A   k++Gn+ f++g++ +A   ++++++    +a++y+n+Ala +kl+   e+A +d++ A++ldP
  MMETSP0890-20130614|37822_1 233 ANREKAKGNEEFRAGEFRQAYNSFSRSIAHVD-TAIAYANRALACIKLN-LLEAAEDDCSIAMRLDP 297
                  77789************************995.9**************7.9***************9 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2.7e-08
    PF13414.1  20 deAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  + A++ ++ A++ldp + ++ ++++ + l++g +ye A++d++ +l
  MMETSP0890-20130614|37822_1 283 EAAEDDCSIAMRLDPAYTKAQARRGMIRLRRG-KYELAIKDLDAVL 327
                  789*****************************.6********9887 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.014        27       7      29 ..     239     261 ..     236     262 .. 0.91
   2 !   17.8   0.9   8.3e-07    0.0016       1      33 [.     266     298 ..     266     299 .. 0.95
   3 !   12.7   0.0   3.2e-05     0.063       2      28 ..     301     327 ..     300     328 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.014
                  HHHHHHHTT-HHHHHHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyyekALe 29 
                  +Gn  ++ g++ +A   +++ + 
  MMETSP0890-20130614|37822_1 239 KGNEEFRAGEFRQAYNSFSRSIA 261
                  79999**************9985 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 8.3e-07
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                  a a+ n+++a+ kl+ ++ A+++++ A +l+P 
  MMETSP0890-20130614|37822_1 266 AIAYANRALACIKLNLLEAAEDDCSIAMRLDPA 298
                  679****************************95 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 3.2e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekAL 28 
                  ka  ++G++ l+ gky+ A+++ + +L
  MMETSP0890-20130614|37822_1 301 KAQARRGMIRLRRGKYELAIKDLDAVL 327
                  67889*****************98665 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.036        69       7      30 ..     239     262 ..     237     265 .. 0.88
   2 !   10.2   0.7   0.00026       0.5       1      33 [.     266     298 ..     266     299 .. 0.95
   3 !   10.5   0.0   0.00021      0.41       3      28 ..     302     327 ..     300     329 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.036
                  HHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafekAlel 30 
                   G+  +++g++ +A + f +++++
  MMETSP0890-20130614|37822_1 239 KGNEEFRAGEFRQAYNSFSRSIAH 262
                  688899*************99975 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                  a a+ n++la++kl+ +e A++++  A +ldP 
  MMETSP0890-20130614|37822_1 266 AIAYANRALACIKLNLLEAAEDDCSIAMRLDPA 298
                  689*****************************6 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00021
                  HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAl 28 
                  a  ++G++ +++g+ye A+++++ +l
  MMETSP0890-20130614|37822_1 302 AQARRGMIRLRRGKYELAIKDLDAVL 327
                  6789*****************99876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   1.5e-05     0.029       2      63 ..     238     298 ..     237     300 .. 0.88
   2 !   16.3   0.4   5.2e-06      0.01      13      58 ..     282     327 ..     277     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-05
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  a++++++raG++++A++ +++ +a     a a+ ++a a+ +l+ l++A+     a +l+P 
  MMETSP0890-20130614|37822_1 238 AKGNEEFRAGEFRQAYNSFSRSIAHVD-TAIAYANRALACIKLNLLEAAEDDCSIAMRLDPA 298
                  6899***************66666664.*********************9888888888876 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 5.2e-06
    PF13432.1  13 ydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraal 58 
                  +++A++  + a++l+P +  a+ +++++ lr+g+++ A++ l+a l
  MMETSP0890-20130614|37822_1 282 LEAAEDDCSIAMRLDPAYTKAQARRGMIRLRRGKYELAIKDLDAVL 327
                  689************************************6655555 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.89   1.7e+03      40      60 ..     244     264 ..     243     274 .. 0.76
   2 ?   12.1   2.0   6.1e-05      0.12      12      69 ..     283     342 ..     261     346 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.89
    PF13371.1  40 aqlgclaaAaedLeaflelcp 60 
                  ++ g++++A + +++ +++ +
  MMETSP0890-20130614|37822_1 244 FRAGEFRQAYNSFSRSIAHVD 264
                  677899999999999888865 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.1e-05
    PF13371.1  12 erALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp..dapdaelir 69 
                  e+A   +   ++l+P        rG+++ ++g ++ A++dL+a l + +  +a +++++r
  MMETSP0890-20130614|37822_1 283 EAAEDDCSIAMRLDPAYTKAQARRGMIRLRRGKYELAIKDLDAVLVNHDlsNAAAIRKLR 342
                  55555666666678888888888*********************9555334555555555 PP

>> PF03766.8  Remorin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.9   4.4e-05     0.087       9      42 ..     131     164 ..     125     171 .. 0.81
   2 ?   -0.7   0.3      0.59   1.1e+03      12      20 ..     391     400 ..     383     407 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.4e-05
    PF03766.8   9 eeeianPPPakeksDdSKAlavvekkaeesadkK 42 
                  +ee+  PPP ++k  + KA+a   ++ e + +kK
  MMETSP0890-20130614|37822_1 131 KEESVLPPPRNQKNNEIKAVASQKNTTESAKEKK 164
                  689999***************9887776666665 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.59
    PF03766.8  12 ianPPPa.ke 20 
                    +PPPa   
  MMETSP0890-20130614|37822_1 391 TVQPPPApSS 400
                  5679998433 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.084   1.6e+02      15      29 ..     261     275 ..     237     284 .. 0.65
   2 ?    4.2   0.7      0.04        78       3      42 ..     268     307 ..     266     311 .. 0.85
   3 ?    6.4   0.2    0.0078        15       2      38 ..     301     338 ..     300     343 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.084
    PF13428.1  15 GdpdeAiallrrala 29 
                   ++d Aia+++rala
  MMETSP0890-20130614|37822_1 261 AHVDTAIAYANRALA 275
                  345666666666665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.04
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllLa 42 
                  a++ +a a++ l+ +++A++ +  a +l+P    a+ + +
  MMETSP0890-20130614|37822_1 268 AYANRALACIKLNLLEAAEDDCSIAMRLDPAYTKAQARRG 307
                  8999**************************9977665544 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0078
    PF13428.1   2 eallalarallalGdpdeAiallrralala.Pddaeal 38 
                  +a+++++ + l++G ++ Ai+ l+++l  +  ++a+a 
  MMETSP0890-20130614|37822_1 301 KAQARRGMIRLRRGKYELAIKDLDAVLVNHdLSNAAAI 338
                  58899999*****************9986514555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1123  (0.0821387); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.95
# Mc/sec: 1097.28
//
Query:       MMETSP0890-20130614|37824_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-21   76.5   0.0    1.7e-05   23.4   0.0    4.9  5  PF02536.9  mTERF
    5.2e-09   35.1   0.9    5.2e-09   35.1   0.6    2.3  2  PF04545.11 Sigma-70, region 4


Domain annotation for each model (and alignments):
>> PF02536.9  mTERF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   1.3e-05     0.086     217     314 ..     216     319 ..     183     346 .. 0.75
   2 !   23.4   0.0   2.5e-09   1.7e-05     216     287 ..     369     436 ..     333     443 .. 0.78
   3 !   12.8   0.0   4.2e-06     0.029     265     314 ..     452     505 ..     444     513 .. 0.78
   4 !    7.5   0.0   0.00018       1.2       5      41 ..     510     547 ..     507     550 .. 0.83
   5 !   13.9   0.0   1.9e-06     0.013     296     340 ..     577     622 ..     571     623 .] 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
                  .......................THHHHHHHHHHHHHHT.----HHHHHHHHHTSGGGGGS-HHH.HHHHHHHHHCT..T--HHHHHCSGGGGGS-HHHHHHHH CS
    PF02536.9 217 lltrvlvede...svikkapqivslseekilnkiefllg.lGfsreeiakmvkrfPqllglsvekvkkkteFlvkem..kwplkelvefPqvlgySLEkrikPR 314
                  ++    +ed+   +v  ++  ++s ++e++  k + l + l     + ++++   P+llg+++ ++  k+++l +        k++   P +l+ S+   + P 
  MMETSP0890-20130614|37824_1 216 FKDDLCLEDQvlaRVAARHGRVLSQRRETLRTKADALSSlLNLDDSQLRHLISAQPALLGYATSTLTTKFKYLNQAYpyANTTKAIMTAPSLLTASIQYSLYPA 319
                  55555566667888888888888889999999999998877888888999999999999999999999999887764225567777777777777776666664 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.5e-09
                  .....................THHHHHHHHHHHHHHT----HHHHHHHHHTSGGGGGS-HHH.HHHHHHHHH CS
    PF02536.9 216 illtrvlvedesvikkapqivslseekilnkiefllglGfsreeiakmvkrfPqllglsvekvkkkteFlvk 287
                  + l+   +++ s+++++p+++ ls+ ki n    l ++  s    +k vkr+Pq+l+ls +k    ++F ++
  MMETSP0890-20130614|37824_1 369 ARLCTSNHSTRSIVRRVPILLTLSATKISNRFAHLDKICGSHTSAVKAVKRYPQVLTLSKKK----IDFTIQ 436
                  34555556666************************************************655....666655 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 4.2e-06
                  HTSGGGGGS-HHH.HHHHHHHHHCTT....--HHHHHCSGGGGGS-HHHHHHHH CS
    PF02536.9 265 krfPqllglsvekvkkkteFlvkemk....wplkelvefPqvlgySLEkrikPR 314
                   ++P +l+ s + +   ++Fl +e      + +  + + Pq l++SLEk +kP+
  MMETSP0890-20130614|37824_1 452 TQCPSVLTRSHKHLDATFDFLSNELGlgptRTAAVIRRRPQALSLSLEKNLKPI 505
                  689999999999999999999999973221344556678999999999999998 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.00018
                  HHHHH----HHHH.HH.H----TT-SS-HHHHHHHHHH CS
    PF02536.9   5 rslgfldslisti.irsyplllvadaekslqpklqfLe 41 
                  r ++fld+   +  i+syp++l+++ +k+l+pkl++L+
  MMETSP0890-20130614|37824_1 510 RVRLFLDTPRLAQfIHSYPTVLGLSPTKNLGPKLDLLK 547
                  556677766666669*******************9996 PP

  == domain 5    score: 13.9 bits;  conditional E-value: 1.9e-06
                  HHCSGGGGGS-HHHHHHHHHHHHH----TT.T...GGGGGS-HHHHHHH CS
    PF02536.9 296 lvefPqvlgySLEkrikPRcnvvkallskg.k...sillslsevlkcsd 340
                  + + P+vlgyS ++ri PR   ++alls + +      l++s+ l++sd
  MMETSP0890-20130614|37824_1 577 VTDCPAVLGYSRSRRIQPR---LEALLSARhQqgiFSFLAISSYLTVSD 622
                  7899***************...******994245545566666666665 PP

>> PF04545.11  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.6   7.6e-13   5.2e-09       2      48 ..      84     132 ..      83     134 .. 0.90
   2 ?   -2.8   0.1      0.52   3.6e+03       2      18 ..     227     243 ..     226     247 .. 0.75

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 7.6e-13
                  CCTS-HHHHHHHHHHH...TST--CCCHHHHHTS-HHHHHHHHHHHHHHH CS
   PF04545.11   2 LasLpererevlelrf...geglTleEiGerlgisrerVrqiekrAlrkL 48 
                  L+ L+ re +v++ rf    ++  + ++++r++is+ rV+q+e +A  kL
  MMETSP0890-20130614|37824_1  84 LEMLSTREAQVIRHRFlsqDKP-VQLQVANRMDISLARVSQLENQARTKL 132
                  788**************75555.788***********************9 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.52
                  CCTS-HHHHHHHHHHHT CS
   PF04545.11   2 LasLpererevlelrfg 18 
                  La+   r+ +vl++r +
  MMETSP0890-20130614|37824_1 227 LARVAARHGRVLSQRRE 243
                  77788899999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.96
# Mc/sec: 1555.14
//
Query:       MMETSP0890-20130614|37838_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       235  (0.0171884); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 405.54
//
Query:       MMETSP0890-20130614|37839_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-17   62.5   5.9    3.8e-17   62.5   4.1    2.1  2  PF09335.6 SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.43   5.9e+03      27      41 ..      93     107 ..      88     125 .. 0.47
   2 !   62.5   4.1   2.8e-21   3.8e-17       5     121 ..     170     287 ..     167     289 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.43
    PF09335.6  27 allgallayllgryl 41 
                  +++ +++  +l+ ++
  MMETSP0890-20130614|37839_1  93 STVFGVVLVALVLRF 107
                  333333322222222 PP

  == domain 2    score: 62.5 bits;  conditional E-value: 2.8e-21
    PF09335.6   5 vllvaaGvlf.glllgtlvtllgallgallayllgrylgk.kalrrkllsekrveklkkverlverygfsallllrllPivprdlvn..yvaGllrvsfkrFllatfigsipwaflyaylG 121
                  vl++a+Gv+f gl+ g l+++++a lg++l +ll+r      +++  +++++r ++   +e+ v  +g++++l+lrl P++p++l    y+ G++ + f +F+++tf+gs++ + + aylG
  MMETSP0890-20130614|37839_1 170 VLALASGVIFgGLIQGALISSTCAALGSSLPFLLARNSDLrPKVLTLARRSPRTRA---LESAVSDRGLVTVLVLRLAPVIPIPLGAynYLYGATSIAFIDFFFGTFLGSLKPYAFDAYLG 287
                  677999999966777*********************99866677777888888888...**********************99986555*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:01.43
# Mc/sec: 861.35
//
Query:       MMETSP0890-20130614|37835_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-21   73.3   0.1    2.7e-20   71.7   0.0    1.8  2  PF01302.20 CAP-Gly domain


Domain annotation for each model (and alignments):
>> PF01302.20  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.14   1.9e+03       8      18 ..      70      80 ..      63      83 .. 0.80
   2 !   71.7   0.0     2e-24   2.7e-20       1      68 [.     131     198 ..     131     199 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.14
                 SSSS-B----- CS
   PF01302.20  8 dpekerrGtvr 18
                 +++++r+Gtvr
  MMETSP0890-20130614|37835_1 70 QDYEQRKGTVR 80
                 5678999**98 PP

  == domain 2    score: 71.7 bits;  conditional E-value: 2e-24
                  -----EESSSS-B----------S.S--.---B----SS--------------S---TT----B-GGGE CS
   PF01302.20   1 vgkrvevdpekerrGtvryvGpvptfks.giwvGveldeprGkndGsvdGvrYFeckpkrGvFvkperv 68 
                  ++ r+++  +  rrG v +vG vp ++  g+w+G+ ldep Gk++G+++G  YFe ++++G Fv+p  v
  MMETSP0890-20130614|37835_1 131 LNARCQI-APGARRGSVAFVGDVPDIPGgGLWIGIRLDEPLGKHNGTIKGNFYFEAPDRHGTFVRPAHV 198
                  588****.889***************99669***********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.84
# Mc/sec: 619.06
//
Query:       MMETSP0890-20130614|37843_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-10   40.6   0.0    2.5e-10   39.9   0.0    1.3  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.8e-14   2.5e-10       4     158 ..      85     242 ..      83     243 .. 0.92

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.8e-14
   PF00650.15   4 leggkvgihgrDkngrpvlylrlgrfdpk...klseeelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkp.isllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyid.peqlpkelGG 158
                  l++g  ++ grD+ grpvl+ + g+ d     ++ e++++r+++ +le +  +++   + + +++v  +++ls ++++    +++l+ +l+ + + +Per   ++i+    + + +f l++p  ++++ ++ ++++ ++  + + +    + ++p+++GG
  MMETSP0890-20130614|37843_1  85 LRDGSLYWKGRDSFGRPVLWSKSGMLDLRglsRQGEKDMIRACSTMLELGAVAATF--SDGRFAYVECTDNLSPKRFPLGIgWRVLRGCLDAFTRGFPERGSVFIIAPTTIVNRIMFALASPISPPSITKRAHLLNRHQAFDRVATLLGdAAKVPSFFGG 242
                  678999***********************99777799**************88888..99****************************************8888888888888999**********************99886666654499*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.62
# Mc/sec: 1159.53
//
Query:       MMETSP0890-20130614|37840_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-113  379.4   0.1   2.5e-113  379.0   0.1    1.1  1  PF00133.17 tRNA synthetases class I (I, L, M and V)
    7.1e-30  103.6   0.2    1.4e-29  102.6   0.1    1.5  1  PF08264.8  Anticodon-binding domain of tRNA
    1.2e-20   73.2   0.4    2.9e-20   71.9   0.3    1.7  1  PF10458.4  Valyl tRNA synthetase tRNA binding arm
      4e-14   51.9   0.4      4e-09   35.4   0.0    2.2  2  PF09334.6  tRNA synthetases class I (M)
    4.9e-05   22.5   0.0     0.0001   21.5   0.0    1.5  1  PF13603.1  Leucyl-tRNA synthetase, Domain 2
     0.0039   15.8   0.0     0.0072   14.9   0.0    1.3  1  PF01921.13 tRNA synthetases class I (K)
  ------ inclusion threshold ------
      0.022   13.7   0.0      0.039   12.9   0.0    1.3  1  PF01406.14 tRNA synthetases class I (C) catalytic domain
       0.04   14.0   0.0      0.085   13.0   0.0    1.6  1  PF05531.7  Nucleopolyhedrovirus P10 protein
      0.062   12.6   0.4        3.8    6.9   0.0    2.4  2  PF04977.10 Septum formation initiator


Domain annotation for each model (and alignments):
>> PF00133.17  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.0   0.1  1.7e-116  2.5e-113     280     600 ..       2     314 ..       1     315 [. 0.93

  Alignments for each domain:
  == domain 1    score: 379.0 bits;  conditional E-value: 1.7e-116
                  -S----------B------HHHH----SS------------------------SSHHHHCCHHHCTT------BEEEEEEEEEETTT--B-EEEEE---EE-HHHHCCHHHHHHH..TSEESS----HHHHHHHCC---EE-EES-----B---EE-----EE-SCC.HHHHHHHHHCC---HHHHHS-CHHHS-------EE---EE-CCCC---TT---TT....TSTTS-..SSECEEEE--CCG---HHHHHHHHHCC----SECEEEE---EE--------TT------CHHHHHH---HHHHHHHC.TS-TTS-EE- CS
   PF00133.17 280 yvdkeaGtGiVkiaPahgedDyevgkkhnlevinvldedGtlneeaeefeglkrfkarkkiveeLkekglllkkekiehsypfcwrsktpiiyrateqWfvkvkelaeaalkave..kvkfvpkskekrykswleniqdWcisRqrwWGtripvwvsketeevvvreelkelvakrleeeaeekalekeakdklkkekgklekdedvlDvWFdSgstpfsvlgypeentkefkkffpadllleGlDqirgWvarlillslaltgkepykevlvhglvldeeGrKMSKslgNvidpldvikkygadalRltliassdvgrdinl 600
                  yvd ++GtG+ ki+P+h+++Dy++gkk+nl+vin+++ dG + +   +f+gl+rf++rk++  eL++ gl +k+e+ +  +p+++r ++++++++++qWfvk++e+a++a +av+  ++++vp+++ek+ + wl ni++Wc+sRq+wWG+rip+w++++ +  v+r+e           +a+ ka++ + k k  + +  l++d+dvlD+WF+Sg++pf++lg+p++++++f++++pa+ l++G+D++++Wvar+++l+++ltgk p+ ++++hglv+de+G+KMSK  gNvidpldv+++ygadalR+ l++  ++g+d+ l
  MMETSP0890-20130614|37840_1   2 YVDPQFGTGALKITPGHDPNDYTIGKKYNLPVINIMNPDGSIVQGYGQFSGLDRFECRKQLWTELENLGLAYKTEEKSQRLPISQRGGEVVEPMVSTQWFVKTEEMANKAADAVRqkNIRIVPNRFEKEWFYWLDNIEHWCVSRQLWWGHRIPAWYDADGNIFVARNEA----------QAKIKAAQFYGKTKNDHDAIVLRQDDDVLDTWFSSGLWPFATLGWPDDDQPDFRHYYPANCLETGYDILFFWVARMVMLGIELTGKIPFDTIYMHGLVRDEKGKKMSKTTGNVIDPLDVVNNYGADALRYSLVTGVTPGQDVPL 314
                  9****************************************************************************************************************99889*****************************************8876664433..........333333333333333334448********************************************************************************************************************9999865 PP

>> PF08264.8  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.1   9.4e-33   1.4e-29       1     152 [.     372     522 ..     372     523 .. 0.90

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 9.4e-33
    PF08264.8   1 drwilselnklikevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedsrr.aqtvlaevletllrllaPfmPfltEelwqrl.eeellgkkesimlaewPe.dseel....eeeleeeevellkeivkairklrselkikpsselkvv 152
                  +rwi+s+ ++ + +v+ ++e+y++ +a +++yef+w++++dwy+el+k r   ++     +    +l ++++  l+ ++PfmP++tE lwqr+ + + + + + +m +++P+ +++ l    ++ +   +++  +++v+ +r+lr+e++++ +s++ v+
  MMETSP0890-20130614|37840_1 372 ERWIISKAHAMAHAVATSLEDYSIGDAGRRVYEFLWDEFADWYVELAKTREFENA-----QfSFRALIYAFDIALKTIHPFMPHVTEFLWQRTcKRHGIADTNALMISSFPAlENSILpidhDAII---DFDAWRDLVRGLRNLRAEYDVNSKSKIAVK 522
                  69************************************************86543.....33349*****************************88889999*********977777777555555...9**********************9998776 PP

>> PF10458.4  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.3   1.9e-23   2.9e-20       1      66 []     591     656 ..     591     656 .. 0.98

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 1.9e-23
    PF10458.4   1 DlekeraRLeKelaklekeierlqkKLsnpgFvakAPaeVVeeekaklaeleeqleklkerLsqLk 66 
                  Dl ke +RLe++l klekei +++ +LsnpgFv+kAPa+VV+e k  lae +eq++ +++ ++ Lk
  MMETSP0890-20130614|37840_1 591 DLSKEFERLERQLGKLEKEITSIDSRLSNPGFVDKAPAHVVNEAKTTLAEKREQRDTITASIASLK 656
                  899*********************************************************999886 PP

>> PF09334.6  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   7.3e-06     0.011     168     239 ..      84     158 ..      58     197 .. 0.80
   2 !   35.4   0.0   2.7e-12     4e-09     312     385 ..     259     331 ..     234     336 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.3e-06
                  B-S----B-EEEEEEEEEE-GGGTHHHHHHHH.SS-...--HHHHHHHHHHH------EE-EE------B-S...S CS
    PF09334.6 168 ksaisgskpevkeeehyffklskfeeklkewi.kenkelpkenvkevlkewlkegLkdlsisrdlkwGipvp...e 239
                   s+  g+  e   ++++f k +++++k  + + ++n ++ ++++++    wl++ ++ +++sr+l wG ++p   +
  MMETSP0890-20130614|37840_1  84 ISQRGGEVVEPMVSTQWFVKTEEMANKAADAVrQKNIRIVPNRFEKEWFYWLDN-IEHWCVSRQLWWGHRIPawyD 158
                  5555555555566799****************7777777888988888899987.*****************7633 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.7e-12
                  -SB--B---EEE-.--B-BTTTTBS-BHHHHTTTS-HHHHHHHHHHT--SSS-EEE-HHHHHHHHHHTTTTT--- CS
    PF09334.6 312 pkkvvahgyltve.gekmSkSrgnvvdpeelleelgvdalRYyllreapekkDsdfseeelvervnseLanklgN 385
                   ++++ hg +  e g+kmSk+ gnv+dp ++++++g+dalRY l++ ++ ++D+ +s++++ +  n + ankl N
  MMETSP0890-20130614|37840_1 259 FDTIYMHGLVRDEkGKKMSKTTGNVIDPLDVVNNYGADALRYSLVTGVTPGQDVPLSMDRVEQ--NRNFANKLWN 331
                  4677788887764278*****************************************999866..6678888877 PP

>> PF13603.1  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.9e-08    0.0001     105     144 ..       2      41 ..       1      50 [. 0.92

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.9e-08
    PF13603.1 105 fvlmeygtgavmavPahdqrDfeFakkynlpikqvikped 144
                  +v  ++gtga+   P+hd +D+   kkynlp+ ++++p++
  MMETSP0890-20130614|37840_1   2 YVDPQFGTGALKITPGHDPNDYTIGKKYNLPVINIMNPDG 41 
                  88899******************************99865 PP

>> PF01921.13  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-06    0.0072     271     325 ..     264     318 ..     251     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.7e-06
   PF01921.13 271 vYelillkggekmssSkGnvitvedwlevaepevlrflia.rkkPkkakkldldle 325
                  +  l+ +++g+kms+ +Gnvi + d+++ +  + lr+ ++  + P + + l++d  
  MMETSP0890-20130614|37840_1 264 MHGLVRDEKGKKMSKTTGNVIDPLDVVNNYGADALRYSLVtGVTPGQDVPLSMD-R 318
                  44689999*****************************65515788888888887.4 PP

>> PF01406.14  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.039     239     282 ..     261     304 ..     250     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.6e-05
                  EEE-----EEETTBE--TT-----BHHHHHTTS-HHHHHHHHH- CS
   PF01406.14 239 kywlhnghlkiegekmsksLknfltikdvlkkfdprqlRlllls 282
                   +++h  +   +g+kmsk  +n++   dv++++ + +lR+ l++
  MMETSP0890-20130614|37840_1 261 TIYMHGLVRDEKGKKMSKTTGNVIDPLDVVNNYGADALRYSLVT 304
                  56888666677899**************************9975 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.6e-05     0.085      32      67 ..     584     619 ..     581     657 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.6e-05
    PF05531.7  32 enlpdvtelnekLdaqsaqLaeletkvenIqdiLnp 67 
                  ++l++v++l+++++++  qL +le+++++I++ L++
  MMETSP0890-20130614|37840_1 584 SDLKTVKDLSKEFERLERQLGKLEKEITSIDSRLSN 619
                  689*****************************9993 PP

>> PF04977.10  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0025       3.8      16      48 ..     586     618 ..     580     620 .. 0.88
   2 ?    3.1   0.2     0.039        59      18      41 ..     637     660 ..     630     662 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0025
   PF04977.10  16 llalyqlkqeiaalqaelaklkaeneeLeaevk 48 
                  l ++++l +e ++l+++l kl++e+++++++++
  MMETSP0890-20130614|37840_1 586 LKTVKDLSKEFERLERQLGKLEKEITSIDSRLS 618
                  6688999******************99998875 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.039
   PF04977.10  18 alyqlkqeiaalqaelaklkaene 41 
                  +l +++++ ++++a +a+lk+e++
  MMETSP0890-20130614|37840_1 637 TLAEKREQRDTITASIASLKEEQA 660
                  455667777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       708  (0.0517847); expected 273.4 (0.02)
Passed bias filter:                      541  (0.0395699); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.97u 0.56s 00:00:01.53 Elapsed: 00:00:01.43
# Mc/sec: 1111.04
//
Query:       MMETSP0890-20130614|37845_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 715.98
//
Query:       MMETSP0890-20130614|37858_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    9.2   5.8       0.47   10.3   0.3    2.5  2  PF13916.1 PP1-regulatory protein, Phostensin N-terminal


Domain annotation for each model (and alignments):
>> PF13916.1  PP1-regulatory protein, Phostensin N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.025   3.4e+02      40      68 ..      54      82 ..      20      93 .. 0.56
   2 ?   10.3   0.3   3.4e-05      0.47       8      26 ..      95     113 ..      88     117 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.025
    PF13916.1 40 esavLlealGPvhqnrfirlererrrqqq 68
                 e +  ++a   +  n  +r      +qqq
  MMETSP0890-20130614|37858_1 54 EASLRADAAKNLITNSSMRTSLSDSQQQQ 82
                 44444445555555666655444433333 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.4e-05
    PF13916.1   8 qmPaWkreiLerrrakLal 26 
                   +P W re  e rra+L++
  MMETSP0890-20130614|37858_1  95 DLPEWHRETKEERRARLSA 113
                  68***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       971  (0.0710211); expected 273.4 (0.02)
Passed bias filter:                      511  (0.0373757); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.71
# Mc/sec: 415.14
//
Query:       MMETSP0890-20130614|37861_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-20   72.1   0.0    1.3e-19   70.2   0.0    1.8  1  PF03016.10 Exostosin family


Domain annotation for each model (and alignments):
>> PF03016.10  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   9.7e-24   1.3e-19      63     301 ..       2     288 ..       1     289 [. 0.70

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 9.7e-24
   PF03016.10  63 fyvpfyaslsv...........lrlngtnaekeerdllpreleeilesqpyWnrsgGrDHvlvnsrd........eggsallrlpalnnntilvv.vaeggfsesqfrpgkDvvlPalfhpnsvdreesa.................aaappakRktllffaGekrragksrsgairdklleeckassdvqcee.......gneskqspenymellkssrFClvppGdtptsrrlfdallagCiPViisd..........qielPfedvldwskfsvfvpekdv..peleeiLra 301
                  f+vpf++ ++            +  +  n    e+++ +  ++++   ++yW++   + H+lv++ +        +   ++ ++ +l ++   ++ v+++++ +     +k++v+P+  + +  +++e+                  +   + +R+ +++ +G+  r+      ++r+ +++ ++a+s++ +             +++p  ++ l+++++FC +p Gd+p+++r +dallagCiPViisd          + +  +  +l+ s f++ v+e+d+   +l +iLr 
  MMETSP0890-20130614|37861_1   2 FFVPFFSDIEYramgrpndpsaHGEAILNII--EKNDTKLWVQRFGVTDKYWQK-APERHILVQAAPvtgfrhpkGRRGWHHYKIQLTAPIFISLeVTKSWILQYPRCASKNIVMPYPIPGRAWHDHEAPdawnvlakqliqslyekKIINNFERPLFALYRGG--RH---GCVNVRQAIAKSLAADSEIATITrsidhawSALGHRGPTARQVLMHTATFCPCPEGDSPSAKRQYDALLAGCIPVIISDdavysydhfaSPHRAYGYALNVSDFAILVSEQDAiqGKLLSILRG 288
                  7788888887666555554442222222222..445555555555666688865.6788999999987777776544444444445555555555666777666666666677777665555555555442222223333333333344455666666666666..33...3348***********99988777999999999999******************************************999999999888888889999***************99999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:00.91
# Mc/sec: 1071.78
//
Query:       MMETSP0890-20130614|37868_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-32  111.7   1.5    2.7e-32  111.4   1.0    1.2  1  PF06294.6  Domain of Unknown Function (DUF1042)
    6.6e-20   70.4   0.0    1.4e-19   69.3   0.0    1.6  1  PF11971.3  CAMSAP CH domain
    0.00038   20.3   0.0    0.00087   19.1   0.0    1.7  1  PF00307.26 Calponin homology (CH) domain
  ------ inclusion threshold ------
      0.021   14.4   1.7      0.021   14.4   1.2    2.2  2  PF04859.7  Plant protein of unknown function (DUF641)
       0.04   13.3   7.5      0.045   13.2   5.2    1.1  1  PF04156.9  IncA protein
      0.055   13.2   8.3      0.087   12.6   5.7    1.3  1  PF04871.8  Uso1 / p115 like vesicle tethering protein, C terminal region
      0.058   13.4   7.1       0.12   12.4   4.9    1.6  1  PF08702.5  Fibrinogen alpha/beta chain family
      0.094   12.5  10.2       0.15   11.8   7.1    1.3  1  PF13863.1  Domain of unknown function (DUF4200)
       0.17   11.4  11.0        0.2   11.3   6.8    1.7  2  PF12325.3  TATA element modulatory factor 1 TATA binding
        1.6    8.5   6.6        5.4    6.9   4.6    2.0  1  PF06667.7  Phage shock protein B


Domain annotation for each model (and alignments):
>> PF06294.6  Domain of Unknown Function (DUF1042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   1.0   1.9e-35   2.7e-32       4     148 ..       2     150 ..       1     166 [. 0.85

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 1.9e-35
    PF06294.6   4 WlqqvsrsvspkklardFSdgllvaeilkkyyprlvdlsnyeekssvqlKLnnwsrlnekvLkklglkltkdvleqiitekpGvaelllhelyall.....qkkkkrgltsleeqtvqesselrlvvlkkkvvkesivnvirrsellslt 148
                  W++ +++s++++++ardF d  l aei+  y+p+lv+l+ny+ +ss+++K+ nw+++n +vL+klg  l+k ++e i ++kpG++el l  l         ++++k g +s  +++ qe+++  +  + ++ v +++    ++ e+  l 
  MMETSP0890-20130614|37868_1   2 WVDSIPLSRPKRNIARDFADCCLAAEIVSHYFPKLVELHNYSAQSSMRQKMYNWDTFNVRVLRKLGAVLNKGEIEAICQCKPGAVELFLRSLQVSIaryktERQQKNGNKSSMHNSLQENKNTVEAKVLSNEVDQELLIEKEQ-EIQDLR 150
                  *****************************************************************************************999776666777888999999999999999888766555554444444423332.455554 PP

>> PF11971.3  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0     1e-22   1.4e-19       3      84 ..       2      81 ..       1      82 [. 0.93

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 1e-22
    PF11971.3  3 sarqlplsppvenltrdlsDGvaLaalihfYcPklvplediclketmsvadslyNlqllqefceekLgnkvseleledllyv 84
                 +++++pls+p++n++rd++D ++ a+++++Y+Pklv+l++++   + s+++++yN+ +++ ++ +kLg    + e+e + ++
  MMETSP0890-20130614|37868_1  2 WVDSIPLSRPKRNIARDFADCCLAAEIVSHYFPKLVELHNYS--AQSSMRQKMYNWDTFNVRVLRKLGAVLNKGEIEAICQC 81
                 899***************************************..***********************887777788888766 PP

>> PF00307.26  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.4e-07   0.00087      18      78 ..       9      67 ..       1      96 [. 0.79

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 6.4e-07
                 TSSHSHHHHHTCTSHHHHHHHHHHSTTSSSGGGSTCCSSSSHHHHHHHHHHHHHHHHHHCT CS
   PF00307.26 18 srqvenlskdlsDGvaLaallhkycpdlvdlediskclkesvadsleNlqlalefaeeklg 78
                 sr+ +n+ +d++D+++ a+++ +y+p+lv+l+    + + s+ ++++N  ++   + +klg
  MMETSP0890-20130614|37868_1  9 SRPKRNIARDFADCCLAAEIVSHYFPKLVELHNY--SAQSSMRQKMYNWDTFNVRVLRKLG 67
                 5677899***************************..4444899****98887665555555 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.9    0.0012       1.7      55     118 ..      90     153 ..      85     154 .. 0.84
   2 ?   14.4   1.2   1.5e-05     0.021      81     120 ..     144     183 ..     137     185 .] 0.93

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
    PF04859.7  55 LkkLselkrlyrrkeakgsakdailaaeiqeqrsllktyeivvkkLeael.rakdseieelrekl 118
                  L++L+    +y+ ++++++ +++ +   +qe+++ +++ ++++++  +el  +k++ei+ lre +
  MMETSP0890-20130614|37868_1  90 LRSLQVSIARYKTERQQKNGNKSSMHNSLQENKNTVEA-KVLSNEVDQELlIEKEQEIQDLRETV 153
                  56666667899999999999****************97.57788888885279*********976 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.5e-05
    PF04859.7  81 aeiqeqrsllktyeivvkkLeaelrakdseieelreklee 120
                   eiq +r+ +   e  v kLe+ lr kd++i +l+++l +
  MMETSP0890-20130614|37868_1 144 QEIQDLRETVDILEQKVAKLEQLLRLKDAKIFQLQNSLSS 183
                  689*********************************9965 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.2   3.3e-05     0.045      77     156 ..      91     170 ..      36     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-05
    PF04156.9  77 srlqeelsesesqlseleeeleqleerlaeleseledleedlellqeelksleerlesleesikelakeirelreeisdl 156
                   +lq +++  +++ ++     + + + l+e++  +e+    +e +qe+l ++e+++++l+e ++ l++++++l++ ++ +
  MMETSP0890-20130614|37868_1  91 RSLQVSIARYKTERQQKNGNKSSMHNSLQENKNTVEAKVLSNEVDQELLIEKEQEIQDLRETVDILEQKVAKLEQLLRLK 170
                  5577888888888888888889999999999999999999999999****************************333333 PP

>> PF04871.8  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.7   6.4e-05     0.087      40     107 ..     101     167 ..      86     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-05
    PF04871.8  40 ekeekalkearltrkkeleksasttkeleaikekldeEalkesqkeqdDLLvlladqeeKvekykekl 107
                  + e ++ ++++ + ++ l+++ ++t e + + +++d+E l e+++e+ DL + ++ +e+Kv+k+++ l
  MMETSP0890-20130614|37868_1 101 KTERQQKNGNKSSMHNSLQEN-KNTVEAKVLSNEVDQELLIEKEQEIQDLRETVDILEQKVAKLEQLL 167
                  445555555556666666655.456678999*********************************9754 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.9   8.5e-05      0.12      65     128 ..     100     168 ..      85     182 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.5e-05
                  HHHCCCHCHCCH...HHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  65 slkekqkqakdn...dniesavskslekki..ililekkilaqesqirvLqevlrsneskiqrLeqdia 128
                  +  e+q+++ ++   +n  ++ ++++e k+      ++  +++e++i+ L+e ++  e+k+ +Leq + 
  MMETSP0890-20130614|37868_1 100 YKTERQQKNGNKssmHNSLQENKNTVEAKVlsNEVDQELLIEKEQEIQDLRETVDILEQKVAKLEQLLR 168
                  3333333333330003344444455555557666777889999*********************99765 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   7.1   0.00011      0.15      36     104 ..      99     167 ..      90     176 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
    PF13863.1  36 elekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkaeiekleekl 104
                  +++ ++++ + ++    + l++n++  e+ + + e ++++ +eke+ei++l+++++ l+++ +kle+ l
  MMETSP0890-20130614|37868_1  99 RYKTERQQKNGNKSSMHNSLQENKNTVEAKVLSNEVDQELLIEKEQEIQDLRETVDILEQKVAKLEQLL 167
                  56777888888999999*************************************************976 PP

>> PF12325.3  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   2.6e+03      13      33 ..      57      77 ..      45      80 .. 0.77
   2 ?   11.3   6.8   0.00014       0.2      21     105 ..      92     180 ..      84     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.9
    PF12325.3 13 gpnvqlveklsstirrlEgEl 33
                   nv+++ kl++ + + E+E 
  MMETSP0890-20130614|37868_1 57 TFNVRVLRKLGAVLNKGEIEA 77
                 468889999999999999885 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00014
    PF12325.3  21 klsstirrlEgElaslk....eelarLekerdeareEivklteeneelkekkkeleelekeleeleqryettLellGEksEeveELraD 105
                   l+ +i r  +E+++ +    +  ++L+++++ +++ ++    + e l ek++e+++l+++++ leq+  ++ +ll  k+ ++  L++ 
  MMETSP0890-20130614|37868_1  92 SLQVSIARYKTERQQKNgnksSMHNSLQENKNTVEAKVLSNEVDQELLIEKEQEIQDLRETVDILEQKVAKLEQLLRLKDAKIFQLQNS 180
                  566667777777766541111345789********************************************************999986 PP

>> PF06667.7  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.6     0.004       5.4      32      66 ..     134     168 ..      97     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.004
    PF06667.7  32 ksqglseedekeLeeLlekaekleeRietlErild 66 
                  + q+l  e e+e+++L+e+++ le+++  lE++l 
  MMETSP0890-20130614|37868_1 134 VDQELLIEKEQEIQDLRETVDILEQKVAKLEQLLR 168
                  5667777899**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1537  (0.11242); expected 273.4 (0.02)
Passed bias filter:                      607  (0.0443973); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:01.34
# Mc/sec: 330.84
//
Query:       MMETSP0890-20130614|37862_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       631  (0.0461527); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.39s 00:00:01.04 Elapsed: 00:00:00.66
# Mc/sec: 1187.29
//
Query:       MMETSP0890-20130614|37871_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-26   90.8   0.0    9.8e-26   90.5   0.0    1.1  1  PF09353.5  Domain of unknown function (DUF1995)
  ------ inclusion threshold ------
      0.074   11.7   0.1       0.12   11.1   0.1    1.3  1  PF01057.12 Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> PF09353.5  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   1.4e-29   9.8e-26       2     207 ..       7     262 ..       5     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 1.4e-29
    PF09353.5   2 PksleeaieqakealaaaLkagkrrllielefpglik................kllplalellqkLaeag.rkllvvfpdageaalakrdl.gdlg...fkllslkdrkeselesaf.....................edllilvapqpieleevekvaeaaad.rpvvllNprLedaaavg..igsearelrkrFlstfevvYylrpleysg...........kgalfrcypepWqlfkedenggyklvaefesrPtleev 207
                  P+s+ ++i+qa+ a+  aL   ++  l+e+efp+l +                +++ lal+l++ L ++   ++ ++fpd+ e ++a  d+  d +   +   s++ +++s ++++                      +d++i++  ++ el+++e++a + +  ++++++N++Le+ + ++    +++++l+ rFl +++++Yylr++ ys            +ga+fr+yp+++q +  + +g+y+ va  ++rP l++ 
  MMETSP0890-20130614|37871_1   7 PQSMGQCIQQAYLAVSVALD--DKVRLMEIEFPPL-PtdvlesaetsasdlarANTDLALSLAKMLVQKRdLNVAIMFPDTAELDRAIEDAgTDEPvpnI---SFNALRRSWITATSieqkalaffgkgedviqaiddADIYICLTFSAQELPDLETLAIKKDPtKTLIMFNLKLETQRGDLglPAFPPKDLQWRFLCRVKPIYYLRTRAYSLsmptppfvvnyQGAIFRQYPGKFQSLLDTGSGNYRAVAIDAQRPPLGTF 262
                  89999***************..55557********.3345667788899999999***********99777********************777665553...444444444444334556688899998888888777******************99888878***********9996666656789********************9999*****************************99*************88776 PP

>> PF01057.12  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.7e-05      0.12     141     177 ..     270     306 ..     263     308 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.7e-05
   PF01057.12 141 ygcvnwtNenfpfndcfkklliwweeglmyvsvvela 177
                   + v+  N+  +f++ + k + wwee +++++++++ 
  MMETSP0890-20130614|37871_1 270 LKLVDSDNKSQSFARTGYKAITWWEEDKDNKEQFNDW 306
                  567899**********************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:01.18
# Mc/sec: 625.49
//
Query:       MMETSP0890-20130614|37870_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-07   29.1  27.4    7.1e-07   29.1  19.0    3.4  3  PF12253.3 Chromatin assembly factor 1 subunit A
  ------ inclusion threshold ------
       0.24   11.0  18.9      0.014   15.1   7.4    2.2  2  PF07897.6 Protein of unknown function (DUF1675)


Domain annotation for each model (and alignments):
>> PF12253.3  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.0         2   1.4e+04      51      62 ..     155     166 ..     150     180 .. 0.48
   2 ?   -2.7   0.3      0.87     6e+03      62      69 ..     234     240 ..     212     249 .. 0.51
   3 !   29.1  19.0     1e-10   7.1e-07       2      75 ..     325     399 ..     324     433 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 2
    PF12253.3  51 eeeeGedlesed 62 
                  eeee   le++ 
  MMETSP0890-20130614|37870_1 155 EEEEERKLEKKR 166
                  333333444433 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.87
    PF12253.3  62 deedeeed 69 
                  ++e ++e+
  MMETSP0890-20130614|37870_1 234 GDE-QQEE 240
                  111.1111 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 1e-10
    PF12253.3   2 kllkFeenvrPpYiGtytkkksavvsarnPlkqdkteldYdyDSdeeW....eeeeeGedlesedeedeeedeeeemd 75 
                  k++ F++++r +Y+  yt ++s+vv + +P++qd +++dYdyDSdee      + e++edl+++d++d+ ed+e+ +d
  MMETSP0890-20130614|37870_1 325 KFFFFYNEYRGAYYD-YTDRTSTVVLPTRPFAQD-SNIDYDYDSDEEFaandAQVEDAEDLNDDDDDDDMEDDED-AD 399
                  8999**********7.5555489***********.9************843222355667766665555444433.33 PP

>> PF07897.6  Protein of unknown function (DUF1675)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   7.4     2e-06     0.014      37     154 ..     126     242 ..     115     299 .. 0.79
   2 ?    0.5   0.7     0.057   3.9e+02     136     184 ..     486     513 ..     471     549 .. 0.43

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-06
    PF07897.6  37 eeergaelegtdvativsdgagLeRTtslpaetEeekrkrkelqslrrl...eakrkrlekessgvsngddqdsveaakaaasqrdkesskavetgseeatsssssgpsssglkekdvlve 154
                  eeer+a+ + +d   +  + a L+R + l  e+Ee+k  +k+l++  r    eak+++l+ ++++ + +++q+s+ +   a+ ++ k++ ++ et++e+++ss+ ++ps++g +e+++++ 
  MMETSP0890-20130614|37870_1 126 EEERVAKFQREDE-AARLKLAALQRKRELKEEEEERKLEKKRLEQEARQkanEAKQRKLDAKQKKLAATQQQQSILM---AFVKKAKSPRSTNETKKEHCNSSTDISPSQDGGDEQQEEKD 242
                  5555565555444.33367889**********999986666665555541126777777777777777777777776...5899999999**********************999998765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.057
    PF07897.6 136 ssssgpsssglkekdvlveaaasgrakderssvsnletkaesssagtep 184
                  s +++pss+ +++                      +e++a+s++a+++ 
  MMETSP0890-20130614|37870_1 486 SNKKSPSSNNKRD---------------------AIEMNASSTKANAND 513
                  2222222211111.....................111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1807  (0.132168); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.32s 00:00:01.58 Elapsed: 00:00:00.92
# Mc/sec: 1474.28
//
Query:       MMETSP0890-20130614|37879_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 896.03
//
Query:       MMETSP0890-20130614|37884_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        72  (0.00526624); expected 273.4 (0.02)
Passed bias filter:                       67  (0.00490053); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:01.10
# Mc/sec: 180.82
//
Query:       MMETSP0890-20130614|37883_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-15   56.5   0.0    3.3e-15   55.5   0.0    1.5  1  PF00027.24 Cyclic nucleotide-binding domain
    7.2e-11   41.5   2.0    1.2e-10   40.8   1.4    1.3  1  PF07885.11 Ion channel
     0.0004   19.6   1.1     0.0004   19.6   0.7    2.0  2  PF00520.26 Ion transport protein
  ------ inclusion threshold ------
      0.012   15.4   0.1       0.02   14.7   0.1    1.3  1  PF04103.10 CD20-like family


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   9.6e-19   3.3e-15       2      91 .]     177     263 ..     176     263 .. 0.96

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 9.6e-19
                  EEE----EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS.B-SSEEEEEEEEEEEEEEHHHHHHHHCC-HH CS
   PF00027.24   2 rsfkkgevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltge.prsatvvaltdvevlvipredfrelleknpe 91 
                  ++++ ++ i++ G + +s++i+ +G+++++ + e+g      +l+pGd+fGelall+ + ++++tv a+t+v++lv+ r++f + +++ pe
  MMETSP0890-20130614|37883_1 177 VTVRSNSLIVERGKRTSSFFILTKGEAEMFDPLEEGI----LVLQPGDSFGELALLGVRsTSQVTVLAKTEVVLLVLQRDKFVDAFRTLPE 263
                  68899*******************************9....59*****************************************9998875 PP

>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   1.4   3.5e-14   1.2e-10      22      77 ..      24      79 ..      13      81 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 3.5e-14
   PF07885.11 22 gwsfldalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvl 77
                 + ++++ +Y++  t+tT+G+Gd+v+++   r+ ai+ +++G a+  +++a+ ++++
  MMETSP0890-20130614|37883_1 24 RRQYVTMMYWAWSTMTTVGFGDVVAESHNNRVYAIIAMFIGSAFYSYVIAMAASIV 79
                 66899*********************7777********************998875 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.7   1.2e-07    0.0004     141     198 ..      23      74 ..       6      75 .. 0.88
   2 ?   -0.0   0.1      0.12     4e+02      46     103 ..     140     199 ..     132     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.2e-07
                  HHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXXXXXXXX CS
   PF00520.26 141 nfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflllnlliav 198
                  + +++++ ++++  +mt++g+gd++++     s  + +y++i +++gs  +++++ia+
  MMETSP0890-20130614|37883_1  23 KRRQYVTMMYWAWSTMTTVGFGDVVAE-----SHNNRVYAIIAMFIGS-AFYSYVIAM 74 
                  56789**********************.....9999999999999999.777777776 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.12
                  XXXXXXXXXXX...XXXXXXXXXXX.X..XXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXX CS
   PF00520.26  46 lvslilrllnkasgllavlrllrvl.R..llrllsrieglrtllisli.rsvkallnvllll 103
                  l++l++ +l ++  +++   l+ vl R  l +l+++i+++ +  +sli +  k+   +++l+
  MMETSP0890-20130614|37883_1 140 LQELVAIELLHE--SVRTNELFEVLpRamLSKLIPIISEVTVRSNSLIvERGKRTSSFFILT 199
                  555555555443..78999999999889999****************999999999998885 PP

>> PF04103.10  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   5.8e-06      0.02      33     110 ..      30     113 ..      19     133 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.8e-06
   PF04103.10  33 ypfWgglifiisGslsiaaekkpt..kllvkgslglnivSlilalagiillivslalqssyesyqsse....tspcseeessek 110
                  + +W+   + ++G+  ++ae + +    ++ +++g    S ++a+a+ i+++ ++ + +++  + + +    ++  +++ + + 
  MMETSP0890-20130614|37883_1  30 MMYWAWSTMTTVGFGDVVAESHNNrvYAIIAMFIGSAFYSYVIAMAASIVGSRDAKQATYFQRMDQVNawmsHHHFPSKLQRHI 113
                  56888899***************9655567778888889999*************99999988855556554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       680  (0.0497367); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:01.24
# Mc/sec: 848.39
//
Query:       MMETSP0890-20130614|37894_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   12.3   0.2       0.13   10.8   0.1    1.7  2  PF01959.11 3-dehydroquinate synthase (EC 4.6.1.3)
       0.16   11.6   3.0       0.15   11.7   0.5    2.1  2  PF08037.6  Attractin family


Domain annotation for each model (and alignments):
>> PF01959.11  3-dehydroquinate synthase (EC 4.6.1.3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.8e-05      0.13      17     106 ..      97     184 ..      88     250 .. 0.68
   2 ?   -0.7   0.0     0.058   3.9e+02      14      54 ..     212     259 ..     199     287 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.8e-05
   PF01959.11  17 avtaalesgvdavlveeeevekvkelgkikvaaaeeekegdgtldlp........dlealkekgkevaayveikskedeeeaaeaakeadlviveged 106
                  +v++alesg++av++ +++v+  +e g i +++a++ +e + ++d++        + e++++  +  ++ ++i +++ e+           +i++++d
  MMETSP0890-20130614|37894_1  97 SVDTALESGASAVVCAPSQVQIAREAGLIPLCCASTVEEVKSAVDVNspvvllasNDEKITTPTSFEGVSLRILDAAAEK----------DTILQARD 184
                  689******************************99977777777777543333222222233333334444444444333..........33333333 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.058
   PF01959.11  14 kkeavtaalesgvdavlveeeevekvkelgkikvaaaee.......ek 54 
                  + ++ +  l+++ ++ lv++ee++k k++++  ++a++        ++
  MMETSP0890-20130614|37894_1 212 QSRTFSGFLSNSKSTNLVDDEEMQKAKNWASFVMTASDAglidefdDG 259
                  555566667777888899999999999999987666555666555422 PP

>> PF08037.6  Attractin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   2.2e-05      0.15      17      38 ..      68      90 ..      59     102 .. 0.82
   2 ?   -1.8   0.0      0.36   2.4e+03      23      32 ..     129     138 ..     123     143 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.2e-05
                 SS------SSHHHHHHHH.HGGG CS
    PF08037.6 17 CedAssCdaliEECktsl.vErC 38
                 C++As+C+++++E k s  +++C
  MMETSP0890-20130614|37894_1 68 CDEASACQSIVDEQKASEnQNHC 90
                 ***************99424555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.36
                  --SSHHHHHH CS
    PF08037.6  23 CdaliEECkt 32 
                  C + +EE k 
  MMETSP0890-20130614|37894_1 129 CASTVEEVKS 138
                  6666777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      316  (0.0231129); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 882.56
//
Query:       MMETSP0890-20130614|37898_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       194  (0.0141896); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.93
# Mc/sec: 309.21
//
Query:       MMETSP0890-20130614|37892_1  [L=1057]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-15   56.0   3.7    8.7e-15   54.8   2.6    1.7  1  PF00059.16 Lectin C-type domain
    7.9e-09   34.9  29.9    9.6e-07   28.2   4.5    7.8  6  PF13920.1  Zinc finger, C3HC4 type (RING finger)
      1e-05   25.1   0.5      1e-05   25.1   0.4    8.2  6  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00021   21.0   0.4    0.00021   21.0   0.3    8.9  7  PF01485.16 IBR domain
    0.00021   20.8   1.0    0.00021   20.8   0.7    7.8  7  PF13639.1  Ring finger domain
    0.00021   20.6  14.0    0.00028   20.2   5.7    6.7  7  PF07699.8  GCC2 and GCC3
     0.0082   15.6   0.9     0.0082   15.6   0.6    8.4  8  PF00097.20 Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF00059.16  Lectin C-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   2.6   4.5e-18   8.7e-15       3     107 ..      77     193 ..      75     194 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 4.5e-18
                  EEHHHHHHHHHHTT-EBS-HSSHHHHHHHHHHHCH..CSSEEEESEEESSTTTCEB.TTT-B-STT.CBSTTCSTSSCC...........TEEEEEEETTTTTSEEEEETTSEEEEEEE CS
   PF00059.16   3 ktweeaekaCqkegakLvsiqseeeqkflkslvkk..snssaWiGlsdekkegefvwtdgssveyt.nwaegepnnkks...........kedCvelskktegkwndesCesklkyvCe 107
                    w+ ae+ C + g++Lv+ + ++e++++ s++    s s++WiGl+++ +e+ f wt++++ + + nw++++ ++ ++           +  Cv   ++   k+ de+C+s ++yvCe
  MMETSP0890-20130614|37892_1  77 VYWTSAERDCYRLGGHLVVYNGQNEANAVASTFAFdfSISDFWIGLNERGNEKAFDWTNKKQCSDYrNWQTTSTSDGSEtreptedieleSYRCVRSDSN--AKLYDENCRSTRRYVCE 193
                  57****************************999878899******************9999887777***99998877688999999998889**88888..9***************8 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   2.3         7   1.4e+04      26      43 ..     203     222 ..     184     223 .. 0.58
   2 !   28.2   4.5   4.9e-10   9.6e-07       4      47 ..     476     520 ..     474     522 .. 0.94
   3 !   16.9   5.4   1.6e-06    0.0032       3      44 ..     609     651 ..     607     657 .. 0.87
   4 !   18.8   0.6   4.2e-07   0.00082       3      41 ..     663     715 ..     661     718 .. 0.80
   5 ?   -0.4   4.5      0.43   8.4e+02       4      48 ..     885     938 ..     882     940 .. 0.85
   6 ?  -18.8  19.0         7   1.4e+04       5      44 ..     954    1007 ..     945    1026 .. 0.77

  Alignments for each domain:
  == domain 1    score: -5.4 bits;  conditional E-value: 7
    PF13920.1  26 CeeCaerllk..rkkkCpiC 43 
                  C+eC   +     + +C +C
  MMETSP0890-20130614|37892_1 203 CSECRIGYYAksGDLECSTC 222
                  66665555444445555555 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 4.9e-10
    PF13920.1   4 tCvvClereadvlllpCgHlclCeeCaerllk.rkkkCpiCrspi 47 
                   C++C +++a++l +pC H+ +C +Ca+  ++ + + C  Cr+p 
  MMETSP0890-20130614|37892_1 476 VCTLCGQQRANALNIPCSHQFFCIDCANTFRQeMGAICNACREPS 520
                  6*****************************889*********985 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1.6e-06
    PF13920.1   3 ktCvvClereadvlllpCgHlclCeeCaerllk.rkkkCpiCr 44 
                  +tC  C + ++ v+ +pCgH++lC++Cae  +    + C  C 
  MMETSP0890-20130614|37892_1 609 STCGGCTQVKSLVVDVPCGHATLCATCAETFRTnHGNICSRCA 651
                  68999**************************766777787776 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 4.2e-07
    PF13920.1   3 ktCvvCle.read..vlllpCgHlclCeeCaerllk............rkkkCp 41 
                   +C vC++  +a+  v+l  CgH+ lC +C  r+++            +  +Cp
  MMETSP0890-20130614|37892_1 663 LSCSVCFDiVPANylVALGSCGHI-LCTACTIRYIRsalanvadqvtaSGIRCP 715
                  68******625554488889****.*********99888888888888788887 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.43
    PF13920.1   4 tCvvClereadvlllpCgHlclCeeCaerllk.........rkkkCpiCrspie 48 
                  tC+ C  + +  + +p   l +Cee  +             ++k Cp C   i+
  MMETSP0890-20130614|37892_1 885 TCPYCDRQSCVRCKVPVHTLLTCEEVQTGSSAlatnafvlaTSKACPQCHFRIT 938
                  7999999999999999999999999888775588899999999******87776 PP

  == domain 6    score: -18.8 bits;  conditional E-value: 7
    PF13920.1    5 CvvClereadvlllp......CgHlclCeeCaerllk.........rkkkCpiCr 44  
                   C+ C ++++ ++l +      Cg+  +C++ a+ l++         r+  CpiC 
  MMETSP0890-20130614|37892_1  954 CPNCGTHFCYTCLRRgtsgssCGCRLFCSN-AQILANidrlpyphdRRCGCPICG 1007
                   777777777777766555555888877776.555555888999999899999984 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   2.2         7   1.4e+04      26      44 ..     203     222 ..     190     240 .. 0.67
   2 !   14.2   4.3   1.3e-05     0.026       3      45 ..     475     517 ..     473     518 .. 0.89
   3 !   11.4   3.9    0.0001       0.2       4      44 ..     610     650 ..     608     652 .. 0.78
   4 !   25.1   0.4   5.1e-09     1e-05       2      42 ..     662     715 ..     661     718 .. 0.86
   5 ?   -7.6   6.4         7   1.4e+04      37      44 ..     921     933 ..     882     935 .. 0.50
   6 ?  -22.3  24.1         7   1.4e+04       5      44 ..     930    1006 ..     926    1020 .. 0.62

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 7
    PF13923.1  26 CkkCieqwleks.kkkCPiC 44 
                  C++C   ++ ks   +C +C
  MMETSP0890-20130614|37892_1 203 CSECRIGYYAKSgDLECSTC 222
                  66666666666433345555 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.3e-05
    PF13923.1   3 fsCpiCleelenpviltpCgHl.yCkkCieqwlekskkkCPiCr 45 
                  f+C +C ++  n+   +pC H  +C +C+  + ++  + C  Cr
  MMETSP0890-20130614|37892_1 475 FVCTLCGQQRANA-LNIPCSHQfFCIDCANTFRQEMGAICNACR 517
                  89***********.56*****769******99988899999998 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.0001
    PF13923.1   4 sCpiCleelenpviltpCgHl.yCkkCieqwlekskkkCPiC 44 
                  +C  C +  +   +  pCgH  +C +C+e + +++ + C  C
  MMETSP0890-20130614|37892_1 610 TCGGCTQVKSLV-VDVPCGHAtLCATCAETFRTNHGNICSRC 650
                  566676665554.669****879**********997777766 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 5.1e-09
    PF13923.1   2 rfsCpiCleelen..pviltpCgHlyCkkCieqwleks...........kkkCP 42 
                  ++sC++C++++     v+l  CgH +C  C  ++++++             +CP
  MMETSP0890-20130614|37892_1 662 ELSCSVCFDIVPAnyLVALGSCGHILCTACTIRYIRSAlanvadqvtasGIRCP 715
                  789*******96667888899***************999988887777777898 PP

  == domain 5    score: -7.6 bits;  conditional E-value: 7
    PF13923.1  37 s.....kkkCPiC 44 
                  +     +k CP+C
  MMETSP0890-20130614|37892_1 921 AfvlatSKACPQC 933
                  1333336778888 PP

  == domain 6    score: -22.3 bits;  conditional E-value: 7
    PF13923.1    5 CpiCleelen............pviltpCgHlyCkkCieqwleks..........kkk.................CPiC 44  
                   Cp C  + +             +  + +Cg ++C++C+ +  + s            +                 CPiC
  MMETSP0890-20130614|37892_1  930 CPQCHFRITHyhghachhirpgT-GCPNCGTHFCYTCLRRGTSGSscgcrlfcsnA-QilanidrlpyphdrrcgCPIC 1006
                   66666666666666666666433.4689**********998777666666655540.1444444444455555556666 PP

>> PF01485.16  IBR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   4.3         7   1.4e+04      19      46 ..     201     222 ..     158     241 .. 0.63
   2 ?   -2.6   4.9       2.5   4.8e+03      39      60 ..     480     507 ..     455     516 .. 0.69
   3 ?  -12.4  10.5         7   1.4e+04      26      40 ..     635     662 ..     607     696 .. 0.54
   4 ?    3.7   0.2     0.025        49       1      30 [.     761     789 ..     760     795 .. 0.81
   5 !   21.0   0.3   1.1e-07   0.00021      39      64 .]     874     907 ..     843     907 .. 0.79
   6 !   11.3   6.7   0.00011      0.21      18      64 .]     927     975 ..     914     975 .. 0.85
   7 ?   -6.4   5.8         7   1.4e+04      45      57 ..    1000    1012 ..     981    1022 .. 0.85

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 7
   PF01485.16  19 kwCprpdCeaiiekekgakkssvtCskC 46 
                  + C  ++C   + +++g+     +Cs+C
  MMETSP0890-20130614|37892_1 201 RSC--SECRIGYYAKSGDL----ECSTC 222
                  355..33555555555553....35555 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.5
   PF01485.16  39 s........svtCskCgfefCflCkkewHe 60 
                           ++ Cs  ++ fC++C + + +
  MMETSP0890-20130614|37892_1 480 CgqqranalNIPCS--HQFFCIDCANTFRQ 507
                  04444556678899..999*****987765 PP

  == domain 3    score: -12.4 bits;  conditional E-value: 7
   PF01485.16  26 Ceaiiekekgakks.............s 40 
                  C + ++ ++g+ +s              
  MMETSP0890-20130614|37892_1 635 CAETFRTNHGNICSrcaaessiqqtvnE 662
                  3333333333333333333333333332 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.025
   PF01485.16   1 ekyeklklkkylesekelkwCprpdCeaii 30 
                  e+++++++++ +++++ +++C +++C++ +
  MMETSP0890-20130614|37892_1 761 ERLQRFMYEASISKDERFNCC-YANCSRLF 789
                  688999999999888888777.55**9865 PP

  == domain 5    score: 21.0 bits;  conditional E-value: 1.1e-07
   PF01485.16  39 s........svtCskCgfefCflCkkewHeglsC 64 
                  +         vtC+ C ++ C++Ck + H  l+C
  MMETSP0890-20130614|37892_1 874 TvsfrgdppYVTCPYCDRQSCVRCKVPVHTLLTC 907
                  0555555557********************9999 PP

  == domain 6    score: 11.3 bits;  conditional E-value: 0.00011
   PF01485.16  18 lkwCprpdCeaiiekekgakks....svtCskCgfefCflCkkewHeglsC 64 
                  +k Cp+  C+  i++ +g ++        C++Cg+ fC+ C+++  +g+sC
  MMETSP0890-20130614|37892_1 927 SKACPQ--CHFRITHYHGHACHhirpGTGCPNCGTHFCYTCLRRGTSGSSC 975
                  358977..*****9999998887888899**************99999888 PP

  == domain 7    score: -6.4 bits;  conditional E-value: 7
   PF01485.16   45 kCgfefCflCkke 57  
                   +Cg+ +C +C++ 
  MMETSP0890-20130614|37892_1 1000 RCGCPICGDCQRG 1012
                   5999999999874 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.2       3.5   6.9e+03      26      43 ..     203     222 ..     180     241 .. 0.61
   2 !    9.4   4.7   0.00039      0.77       2      46 .]     476     519 ..     475     519 .. 0.86
   3 ?    4.5   4.6     0.013        26       3      44 ..     611     651 ..     609     653 .. 0.77
   4 !   20.8   0.7   1.1e-07   0.00021       2      42 ..     664     716 ..     663     717 .. 0.80
   5 ?   -1.5   4.5      0.98   1.9e+03      15      44 ..     882     934 ..     870     936 .. 0.56
   6 ?  -18.2  20.8         7   1.4e+04       3      43 ..     930    1006 ..     928    1020 .. 0.64
   7 ?   -2.3   0.1       1.7   3.4e+03       3       9 ..    1022    1028 ..    1020    1036 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.5
    PF13639.1  26 HeeC.ldewlrssn.sCPlC 43 
                  ++eC +  + +s + +C +C
  MMETSP0890-20130614|37892_1 203 CSECrIGYYAKSGDlECSTC 222
                  66664444444432355555 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00039
    PF13639.1   2 eCaiCldelsegeevvrlpCgHv.fHeeCldewlrs.snsCPlCrkp 46 
                  +C++C ++     ++  +pC+H  f+ +C + + ++    C  Cr+p
  MMETSP0890-20130614|37892_1 476 VCTLCGQQR---ANALNIPCSHQfFCIDCANTFRQEmGAICNACREP 519
                  699999996...79*******955*********9983479****986 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.013
    PF13639.1   3 CaiCldelsegeevvrlpCgHv.fHeeCldewlrss.nsCPlCr 44 
                  C  C +    ++ vv  pCgH   +++C + + +++ n C  C 
  MMETSP0890-20130614|37892_1 611 CGGCTQV---KSLVVDVPCGHAtLCATCAETFRTNHgNICSRCA 651
                  5555554...47899******66*********998767888885 PP

  == domain 4    score: 20.8 bits;  conditional E-value: 1.1e-07
    PF13639.1   2 eCaiCldelsegeevvrlp.CgHvfHeeCldewlrssn............sCPl 42 
                  +C++C+d +  ++ +v l  CgH+ +  C  +++rs              +CPl
  MMETSP0890-20130614|37892_1 664 SCSVCFDIV-PANYLVALGsCGHILCTACTIRYIRSALanvadqvtasgiRCPL 716
                  6*******9.5788998888*************987422355667777789996 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.98
    PF13639.1  15 evvrlp.CgHvfHeeC...ldew...................lrssnsCPlCr 44 
                  + v++p C    +++C   ++ +                   l +s+ CP C 
  MMETSP0890-20130614|37892_1 882 PYVTCPyCDRQSCVRCkvpVHTLltceevqtgssalatnafvLATSKACPQCH 934
                  44577788888888886554444333333333333222222235556999996 PP

  == domain 6    score: -18.2 bits;  conditional E-value: 7
    PF13639.1    3 CaiCldelse..geevvrl......p.CgHvfHeeCldewlrssn...........................sCPlC 43  
                   C+ C   +++  g++++ +      p Cg  f+++Cl++  + s+                            CP+C
  MMETSP0890-20130614|37892_1  930 CPQCHFRITHyhGHACHHIrpgtgcPnCGTHFCYTCLRRGTSGSScgcrlfcsnaqilanidrlpyphdrrcGCPIC 1006
                   666666665555555553333444466***********975332223334444455666666777777777788888 PP

  == domain 7    score: -2.3 bits;  conditional E-value: 1.7
    PF13639.1    3 CaiClde 9   
                   C++Cl  
  MMETSP0890-20130614|37892_1 1022 CVVCLGI 1028
                   ****975 PP

>> PF07699.8  GCC2 and GCC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   2.7e-05     0.052      13      36 ..      11      35 ..       3      39 .. 0.88
   2 !   20.2   5.7   1.4e-07   0.00028      10      48 .]     202     239 ..     197     243 .. 0.77
   3 ?   -1.5   2.1      0.89   1.7e+03      11      32 ..     498     517 ..     490     521 .. 0.75
   4 ?   -2.0   3.2       1.3   2.5e+03      11      36 ..     632     655 ..     627     668 .. 0.66
   5 ?   -3.6   0.0       3.9   7.5e+03      11      18 ..     688     695 ..     686     717 .. 0.64
   6 ?   -4.4   2.2       6.9   1.4e+04      24      38 ..     890     904 ..     886     909 .. 0.75
   7 ?   -6.8   3.2         7   1.4e+04      21      31 ..     955     965 ..     927     973 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.7e-05
    PF07699.8 13 pCprGtYkneegqk.kCiaCppgtt 36
                 +C+ G Y+++++++  C++Cppgt+
  MMETSP0890-20130614|37892_1 11 LCEAGRYSDTYSSDaVCKKCPPGTV 35
                 7*******9999998********86 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.4e-07
    PF07699.8  10 kCepCprGtYkneegqkkCiaCppgttTskkgsksesdC 48 
                   C++C +G+Y + +g+ +C  C  g +T++kgs+s + C
  MMETSP0890-20130614|37892_1 202 SCSECRIGYYAK-SGDLECSTCDFGEYTDQKGSSSCDTC 239
                  688888888865.46666888888888888888888877 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.89
    PF07699.8  11 CepCprGtYkneegqkkCiaCp 32 
                  C+ C  +t+++e g   C+aC 
  MMETSP0890-20130614|37892_1 498 CIDCA-NTFRQEMGAI-CNACR 517
                  77774.7888888887.88886 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 1.3
    PF07699.8  11 CepCprGtYkneegqkkCiaCppgtt 36 
                  C  C   t++ + g+  C  C ++++
  MMETSP0890-20130614|37892_1 632 CATCA-ETFRTNHGNI-CSRCAAESS 655
                  66665.4888888887.888887753 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 3.9
    PF07699.8  11 CepCprGt 18 
                  C++C + +
  MMETSP0890-20130614|37892_1 688 CTACTIRY 695
                  66666654 PP

  == domain 6    score: -4.4 bits;  conditional E-value: 6.9
    PF07699.8  24 gqkkCiaCppgttTs 38 
                    ++C  C    +T+
  MMETSP0890-20130614|37892_1 890 DRQSCVRCKVPVHTL 904
                  567999999887775 PP

  == domain 7    score: -6.8 bits;  conditional E-value: 7
    PF07699.8  21 neegqkkCiaC 31 
                  ++ g  +C  C
  MMETSP0890-20130614|37892_1 955 PNCGTHFCYTC 965
                  44455555555 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.1      0.47   9.1e+02      22      41 .]     203     222 ..     201     222 .. 0.91
   2 !   10.6   5.7   0.00015       0.3       1      41 []     477     516 ..     477     518 .. 0.93
   3 !    5.6   5.0    0.0057        11       4      41 .]     614     650 ..     611     650 .. 0.76
   4 !   15.6   0.6   4.2e-06    0.0082       1      33 [.     665     709 ..     665     716 .. 0.76
   5 ?   -3.5   0.7       4.1   7.9e+03      35      41 .]     883     889 ..     882     889 .. 0.85
   6 ?   -2.3   0.2       1.7   3.3e+03      35      41 .]     927     933 ..     922     933 .. 0.79
   7 ?   -9.0  10.5         7   1.4e+04      16      38 ..     956     977 ..     930     981 .. 0.81
   8 ?   -9.1   6.4         7   1.4e+04       6       6 ..    1008    1008 ..     990    1018 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.47
                  -CHHHHHHHCST-----TTT CS
   PF00097.20  22 CskCirkilksrkkvkCPlC 41 
                  Cs+C   ++ +++  +C +C
  MMETSP0890-20130614|37892_1 203 CSECRIGYYAKSGDLECSTC 222
                  ****999999999999**99 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00015
                  -TTTSSS-SSEE.BSCTS-E.E-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                  C +C +  +++   ++C H+ fC +C  + ++ ++   C  C
  MMETSP0890-20130614|37892_1 477 CTLCGQQRANAL-NIPCSHQfFCIDCANTFRQ-EMGAICNAC 516
                  99********99.******************9.777779888 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0057
                  TSSS-SSEE.BSCTS-E.E-CHHHHHHHCST-----TTT CS
   PF00097.20   4 CleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                  C+++ +  +   +C+H+ +C +C ++ + ++++  C  C
  MMETSP0890-20130614|37892_1 614 CTQVKSLVV-DVPCGHAtLCATCAETFRTNHGNI-CSRC 650
                  555555555.78*****9***********55444.9999 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 4.2e-06
                  -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCS..........T CS
   PF00097.20   1 CpiCleeakepn..elleCkHsfCskCirkilks..........r 33 
                  C++C++ +  +    l  C+H +C++C  ++++s           
  MMETSP0890-20130614|37892_1 665 CSVCFDIVPANYlvALGSCGHILCTACTIRYIRSalanvadqvtA 709
                  9****988776678999**************99776666555443 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 4.1
                  ----TTT CS
   PF00097.20  35 kvkCPlC 41 
                  +v+CP C
  MMETSP0890-20130614|37892_1 883 YVTCPYC 889
                  589**99 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 1.7
                  ----TTT CS
   PF00097.20  35 kvkCPlC 41 
                  ++ CP+C
  MMETSP0890-20130614|37892_1 927 SKACPQC 933
                  567***9 PP

  == domain 7    score: -9.0 bits;  conditional E-value: 7
                  CTS-EE-CHHHHHHHCST----- CS
   PF00097.20  16 eCkHsfCskCirkilksrkkvkC 38 
                  +C+  fC++C+r+ ++  +++ C
  MMETSP0890-20130614|37892_1 956 NCGTHFCYTCLRRGTS-GSSCGC 977
                  69999*******9888.666666 PP

  == domain 8    score: -9.1 bits;  conditional E-value: 7
                   S CS
   PF00097.20    6 e 6   
                   +
  MMETSP0890-20130614|37892_1 1008 D 1008
                   2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       895  (0.0654623); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:01.34
# Mc/sec: 1890.26
//
Query:       MMETSP0890-20130614|37907_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.90
# Mc/sec: 1136.94
//
Query:       MMETSP0890-20130614|37912_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.68
# Mc/sec: 1554.11
//
Query:       MMETSP0890-20130614|37915_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-11   41.1   0.1      1e-10   40.9   0.1    1.1  1  PF00013.24 KH domain
    2.6e-06   26.8   0.2    4.3e-06   26.1   0.2    1.4  1  PF13014.1  KH domain
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.018   14.6   0.0    1.3  1  PF13184.1  NusA-like KH domain
      0.023   14.1   0.0      0.028   13.8   0.0    1.2  1  PF07650.12 KH domain
      0.041   13.3   0.0      0.064   12.7   0.0    1.3  1  PF13083.1  KH domain
       0.12   11.5   0.0       0.13   11.4   0.0    1.0  1  PF02424.10 ApbE family


Domain annotation for each model (and alignments):
>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   4.5e-14     1e-10       3      58 .]      19      75 ..      17      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 4.5e-14
                 EEEEECCCCHHH---TTHHHHHHHHHHT-E.EEE--SE.EEEEEE.SHHHHHHHHHHH CS
   PF00013.24  3 rvkvpnskigriIGkgGsnIkeIeeetgak.IdvpkdrdtvtisG.dpesvekAkkli 58
                 ++ +p+s ig++IG gG+nIk I e++g + ++v++ +  v++ G +  + + A+++i
  MMETSP0890-20130614|37915_1 19 TLTIPPSTIGKLIGAGGRNIKSIIEDFGLRdVNVDDGG-EVVVAGlNDTALDLAINHI 75
                 689*******************************5545.9999999999988887765 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   1.9e-09   4.3e-06       2      28 ..      27      54 ..      26      65 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.9e-09
    PF13014.1  2 vgliIGkgGetIkeIreetGak.Irfpk 28
                 +g++IG+gG +Ik+I e++G + +++++
  MMETSP0890-20130614|37915_1 27 IGKLIGAGGRNIKSIIEDFGLRdVNVDD 54
                 89******************99999998 PP

>> PF13184.1  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   8.1e-06     0.018      18      38 ..      26      46 ..      22      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.1e-06
    PF13184.1 18 pvgaivgkkgsrikaisseLn 38
                  +g+++g++g++ik+i++++ 
  MMETSP0890-20130614|37915_1 26 TIGKLIGAGGRNIKSIIEDFG 46
                 69****************994 PP

>> PF07650.12  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.028      28      55 ..      19      46 ..       9      60 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
                 EEEEEESCCCCC------HHHHHHHHHH CS
   PF07650.12 28 iiviresqpgivIGkgGsnikklgkelr 55
                 +++i  s +g +IG gG+nik++ ++++
  MMETSP0890-20130614|37915_1 19 TLTIPPSTIGKLIGAGGRNIKSIIEDFG 46
                 56777899999************99876 PP

>> PF13083.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.8e-05     0.064      32      54 ..      19      41 ..       9      42 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
    PF13083.1 32 nlnvdgedlGrlIGkrGktldAL 54
                 +l++ ++ +G+lIG  G++++++
  MMETSP0890-20130614|37915_1 19 TLTIPPSTIGKLIGAGGRNIKSI 41
                 57788899*************98 PP

>> PF02424.10  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.6e-05      0.13     101     151 ..      16      66 ..       4      77 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.6e-05
                  SSTT-----TT---..--HHHHHHHHHHH----EEEEE----EEEE------- CS
   PF02424.10 101 kkpgmaldlggiak..GyavdrvaealraagitnalVeiGGdiralgkkpdgr 151
                  +++ + + ++ i+k  G++   +  +++++g++++ V+ GG++++ g +   +
  MMETSP0890-20130614|37915_1  16 RQRTLTIPPSTIGKliGAGGRNIKSIIEDFGLRDVNVDDGGEVVVAGLND--T 66 
                  5666777778888866788889999**********************993..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       173  (0.0126536); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.50
# Mc/sec: 412.17
//
Query:       MMETSP0890-20130614|37903_1  [L=2025]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-89  300.5   0.0    1.8e-77  260.9   0.0    3.3  3  PF13764.1 E3 ubiquitin-protein ligase UBR4


Domain annotation for each model (and alignments):
>> PF13764.1  E3 ubiquitin-protein ligase UBR4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.2   6.6e-13     9e-09      14     105 ..     827     918 ..     822     931 .. 0.75
   2 !  260.9   0.0   1.3e-81   1.8e-77      67     658 ..    1028    1750 ..    1016    1780 .. 0.78
   3 !    1.0   0.0    0.0048        66     687     753 ..    1878    1960 ..    1829    1993 .. 0.65

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 6.6e-13
    PF13764.1  14 gPLmRDvKNkICrdlellaLleDDnGmELLVankIisLdlsvkdVYekvWkkene..gppmtvvYRlqGLdGeAtEeii.eeLeddreeeedpee 105
                   P m D++ kI  dl++ +  +    +ELLV ++I+sL+l+++ VY+k+W    +   ++      l  L G+A+  ++  e +d++e+ee++ +
  MMETSP0890-20130614|37903_1 827 EPTMGDLRAKIAADLDMASAAD---MLELLVCERIVSLSLPIRLVYKKLWLPRARaaASARSRRSQLVALHGDAVPRVVmHECDDEDEDEEEDIV 918
                  699***************9765...59***********************7654411444445556889******99882455555555555444 PP

  == domain 2    score: 260.9 bits;  conditional E-value: 1.3e-81
    PF13764.1   67 negppmtvvYRlqGLdGeAtEeiieeLeddreeeedpeeefaiasvlqecgGleillsllekirdlssgkellqavlkllescvkikenrqaLlklgalevlLetlrrafsqeakekleiaeelleiveslvseansd..slseelsasttsqakeqvelflerlk....salkksnkkelealariipfltygeeesmeaLvehFkplle....fdeldeeks...kee........qlalelfvriaesikrdss..G.erlkeiilekGivksavkylkeefaeak............qk.sskewkkalekpslpliL....slLkGlargheatq.klieedllkllHkLEqvs..seeeiGtlaENlletlaekeevkk..................kveelRketreekrrkAlakRekllkelgmkvsskG.kivvskrllegledleeedglvCmvCrEgyslkptdvlgiYtfskrvnlee............tegkkrke..........................................vvytTvshfniiHfdCHqeakra.aalkrpkkEWegaaLrNaetkCNnllPvrgpsv.......seaayaravdrywdnlneigr.a..........depklrllvyDikllLarfateaSFsadskGGGreSNirllpfliqlalhlldqsrakqre.....ekalaaylssssekvae 658 
                   ++ ppm v+YRl+G dGeAtEe++++L++     e  e ++  + ++   gGl+ l  l + + +l+++    +  l ll++cv++ +   aL ++ga + lL  l ra+++  ++k +  e+ll++ e l    + d  +++++  +  ts++++++e++++ l+     a+ ++++ + +a+ r++p+l+ g++++ + L++  ++ ++    + +  +e++   +++         ++  ++ +  e + + ++  G  +l +++  +G v++a++ l+e+++++             ++  ++ w+ a+   ++  +L    + L+G +    +    ++e d l+++H LEq +  s +++G  aE +l+++a +++v+                   +v++lR+ t++++   A+ +R kll++lg++      ++ +++++ + +e+ ++e  l+C+vCrE    kp+dvl  Y ++k +  ++                                                               v++ vs  n+iH +CH+ea+ra   l+ p++EW+ga+LrN+  +CN+ +P+r           +++ay +a+dr+  ++ ++g  a          ++++++++ +D +llL r+a+ +  +++s+GG r SNi ll +l+qla+hll + +           + + a+ s+ s+    
  MMETSP0890-20130614|37903_1 1028 KHMPPMIVTYRLTGVDGEATEERVDSLDSGPAT-EAAEDRYGATAAIVAAGGLHELAALAADVSELEEEGVTSR-ALALLRQCVNVDRHATALAEMGAPAALLGRLVRALRVGGNNKDRDVERLLSLLERLAPAMRDDagEVQNKSVDIDTSNSSSHLETLVDGLRdarvAAALDRTPALRRAVCRLLPALAVGKDSAADSLASRTTDWMRrpeqWARCFSETTavlTDDaasaahldLVEASCLRETVEGLGDHATapGaAELGDALERAGFVTAACQALAERLPNQAplfpwlsseddeDRiPAATWTAAIGAVGVGQVLlaslRALRGACAASRNCAiACLEADALEMIHFLEQLTptSTRDVGLAAEACLDAVACQDSVNYsiiedetsrglnldaagaRVRHLRAVTKRQRITYAHSRRAKLLNRLGLTEPPSAiEVSTAPPIASTIENEDNEPCLTCVVCREDS--KPRDVLCAYIYTKLAVADVgdadgafllgieS------GgtasgsisrqtsggtstaisrfarggttssgsrsisrqrrryGVVSSVSAWNLIHSSCHREATRAeRNLRSPRSEWDGATLRNSRVLCNSFIPLRPSAAigsdataATTAYNSALDRHFASMSQLGVsArsssssssseAPTRFTVVLHDARLLLLRLAHREQLHSESGGGSRASNIMLLCYLLQLATHLLVSNKPADSPdrdhlRRIVDAFASQASSALSR 1750
                   679************************987665.567889999999999***************9988776655.578**********************************99999999**********9987775511556666667888999********999544444667788889***********************9988886566666544443323322244545443455566667777776554422436899***********************5445555555433223599********99987753333789998877665541679*************9633699**************9999555555566777777777888*******************************7555568899999*******999***********87..9***********99988886666666655540......0444555666678999999999999999999999999999998889*************************************************9764312111115678********999988764211111111110233455577******************************************98854444321112244566666665555444 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.0048
    PF13764.1  687 rallkrllahakvehvsgratskasa................aesdkskkkfsilrpmLiyvglvdklqelfkkkkssekeee 753 
                   r l+++  ++a  e+ + r++s++s+                ++++++++  s +r+mL y++l+d++ + +   + + ++  
  MMETSP0890-20130614|37903_1 1878 RGLVRAETRAAAREQSRLRSASDVSVssiaagpppvsgayrtMDTNTRQRARSYARSMLAYIALLDRFRSEICLSSVQDENRI 1960
                   3333333333333333444444444388888999999999888888888889999*************999886543322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2025 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       799  (0.0584406); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.70u 0.61s 00:00:03.31 Elapsed: 00:00:02.44
# Mc/sec: 1988.78
//
Query:       MMETSP0890-20130614|37922_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.44s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 407.09
//
Query:       MMETSP0890-20130614|37921_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   36.8   0.1    4.9e-09   35.3   0.1    1.8  1  PF08423.6  Rad51
    7.2e-07   28.4   0.0    9.2e-07   28.1   0.0    1.2  1  PF00154.16 recA bacterial DNA recombination protein
    4.2e-06   26.1   0.0    8.8e-06   25.1   0.0    1.6  1  PF13481.1  AAA domain
    2.2e-05   23.5   0.1    3.6e-05   22.8   0.0    1.3  1  PF06745.8  KaiC
     0.0011   18.2   0.0     0.0015   17.8   0.0    1.3  1  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.014   14.6   0.2      0.049   12.9   0.2    1.9  1  PF01656.18 CobQ/CobB/MinD/ParA nucleotide binding domain
      0.019   15.7   0.0      0.035   14.8   0.0    1.5  1  PF13578.1  Methyltransferase domain
      0.019   14.4   0.1      0.044   13.2   0.1    1.7  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.028   13.9   0.2       0.49    9.8   0.0    2.3  2  PF05729.7  NACHT domain
       0.16   11.3   0.0       0.35   10.2   0.0    1.5  1  PF03029.12 Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> PF08423.6  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   3.6e-12   4.9e-09      13      99 ..      72     154 ..      60     251 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 3.6e-12
    PF08423.6  13 aellekrkevik.ittGskeldkllgGGietgsitevfGefrtGktqlchtlavtaqlplekgGgegkvlyidt.egtfrperlvaiae 99 
                  ++  e r+++ + ++tG  ++d+llgGGi+ g ite+ Ge  +Gkt +c t+a  a  +      + +v++id     f ++rl +ia 
  MMETSP0890-20130614|37921_1  72 SARIEVRSSLTEfLSTGNVAIDALLGGGIRRGEITELQGECGSGKTSFCLTVAALAAKN------KLQVIWIDGcTCGFDAKRLRDIAA 154
                  555566766664389**********************************9988665433......457888885245688888888874 PP

>> PF00154.16  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   6.7e-10   9.2e-07      31      89 ..      82     139 ..      70     195 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 6.7e-10
                  --B-----HHHHHH------B---EEEEE-------HHHHHHHHHHHHH----EEEEES CS
   PF00154.16  31 vevistgslaldialGiGGlPkGriieiyGpessGkttlalhaiaeaqkkggvaafida 89 
                   e +stg++a+d  lG GG+ +G i+e+ G   sGkt ++l + a a k+  ++ +id 
  MMETSP0890-20130614|37921_1  82 TEFLSTGNVAIDALLG-GGIRRGEITELQGECGSGKTSFCLTVAALAAKNKLQVIWIDG 139
                  5789************.****************************99999999999985 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   6.5e-09   8.8e-06       4     146 ..      74     185 ..      72     229 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.5e-09
    PF13481.1   4 plelltvsaedldtppppldwlvkgllprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagv.gslrltaddrrdalltadlerllaaieelegpdlv 146
                  ++e++++ +e+l+t+    d l++g + rg++t l G+ g+GK++++l  aa +a+          +++ V+++++       ++rl+ i+a  +  +n++    ++v + + ++++d+ d                     l+
  MMETSP0890-20130614|37921_1  74 RIEVRSSLTEFLSTGNVAIDALLGGGIRRGEITELQGECGSGKTSFCLTVAALAAK----------NKLQVIWIDGCTCG-FDAKRLRDIAACPESLGNVRRCFASDVfEAIAVIDEDSSD---------------------LL 185
                  5678889999******************************************9986..........57899999988887.5567888888776666666666555554545444444444.....................33 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.6e-08   3.6e-05       2      46 ..      86     130 ..      85     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.6e-08
    PF06745.8   2 ktgIeglDellkgGipegrvvlitGepGtGKtifalqFlikgaee 46 
                  +tg   +D ll gGi +g+++ + Ge G+GKt f+l+ +   a++
  MMETSP0890-20130614|37921_1  86 STGNVAIDALLGGGIRRGEITELQGECGSGKTSFCLTVAALAAKN 130
                  5777789****************************9877666655 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0015       2      92 ..     105     189 ..     104     250 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
                  EEEEE-------HHHHHHHHCHS---S-EEEEES-----HCCCCCHHT-S-.EEEE----ECC-TTS-HHHHHCCCHHHCH-T-SEEEEE- CS
   PF02492.14   2 vtvltGflGsGKTtLleklleknreglkiaVivndfgetkiDaellretgveivelnnGciCctlredllmelealeelkeerldvlliEt 92 
                  +t l G  GsGKT++  ++  + +++ k+ Vi  d  + + Da++lr+  ++  +l n   C    +d+ ++++ ++e +    d+l++ +
  MMETSP0890-20130614|37921_1 105 ITELQGECGSGKTSFCLTVA-ALAAKNKLQVIWIDGCTCGFDAKRLRDIAACPESLGNVRRCFA--SDVFEAIAVIDEDS---SDLLILDS 189
                  57899**********99999.77899***********************999999999999999..88888888888777...45555544 PP

>> PF01656.18  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.6e-05     0.049       8      35 ..     112     139 ..     108     229 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.6e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01656.18   8 GGvGKTtlaanLaralakrglrVlliDl 35 
                   G+GKT+++++ a++ ak++l+V+ iD 
  MMETSP0890-20130614|37921_1 112 CGSGKTSFCLTVAALAAKNKLQVIWIDG 139
                  59************************95 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.6e-05     0.035       2      79 ..     111     191 ..     110     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.6e-05
    PF13578.1   2 EiGvysGvstlvllqa.lkrngagrlysvdpdpg...aeeaaalaee.agladrvrllkgdseealasladgsiDllfiDggh 79 
                  E+G  sG++++ l  a l ++++ +++ +d +     a++ +++a+  + l ++ r + +d +ea+a ++++s Dll++D++ 
  MMETSP0890-20130614|37921_1 111 ECG--SGKTSFCLTVAaLAAKNKLQVIWIDGCTCgfdAKRLRDIAACpESLGNVRRCFASDVFEAIAVIDEDSSDLLILDSPQ 191
                  99*..999987765441444444689999997755555556666666899********************9*********985 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.3e-05     0.044       8      36 ..      96     124 ..      89     135 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-05
   PF02367.12   8 laellkagdvvlLsGdlGaGKTtlvkgla 36 
                  l+  ++ g++  L+G+ G+GKT+++  +a
  MMETSP0890-20130614|37921_1  96 LGGGIRRGEITELQGECGSGKTSFCLTVA 124
                  6667899*****************97665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.13   1.8e+02     107     143 ..      52      88 ..      35     100 .. 0.76
   2 ?    9.8   0.0   0.00036      0.49       5      29 ..     108     132 ..     104     138 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.13
    PF05729.7 107 rtlLselirkkllpeasllltvrpdalrdleeqleea 143
                     L++ +  ++lp+ ++ +++r + ++ l e l++ 
  MMETSP0890-20130614|37921_1  52 VIALRQQLASQILPKECINWSARIEVRSSLTEFLSTG 88 
                  5567888888899999999999999888888888876 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00036
    PF05729.7   5 lqGeaGsGKTtLlqklasawakgkl 29 
                  lqGe GsGKT +   +a ++ak+kl
  MMETSP0890-20130614|37921_1 108 LQGECGSGKTSFCLTVAALAAKNKL 132
                  89*****************999987 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00025      0.35       3      31 ..     110     136 ..     108     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00025
   PF03029.12   3 GpaGsGKttfvgalseilelskrsvavvN 31 
                  G  GsGKt+f+ +++ ++ ++k   +v+ 
  MMETSP0890-20130614|37921_1 110 GECGSGKTSFCLTVAALAAKNKL--QVIW 136
                  899*************9998855..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       514  (0.0375951); expected 273.4 (0.02)
Passed bias filter:                      481  (0.0351814); expected 273.4 (0.02)
Passed Vit filter:                        76  (0.00555881); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.36s 00:00:00.99 Elapsed: 00:00:01.32
# Mc/sec: 481.09
//
Query:       MMETSP0890-20130614|37925_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-07   28.5   5.0    1.5e-06   27.8   3.4    1.4  1  PF06747.8  CHCH domain
     0.0058   16.5   3.0      0.011   15.6   2.1    1.5  1  PF10203.4  Cytochrome c oxidase assembly protein PET191
     0.0085   15.7   2.5       0.67    9.6   0.1    2.3  2  PF08583.5  Cytochrome c oxidase biogenesis protein Cmc1 like
  ------ inclusion threshold ------
      0.057   13.2   2.0      0.082   12.7   1.4    1.4  1  PF02297.12 Cytochrome oxidase c subunit VIb
        0.2   11.5   3.0        2.9    7.8   0.2    2.4  2  PF05051.8  Cytochrome C oxidase copper chaperone (COX17)


Domain annotation for each model (and alignments):
>> PF06747.8  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   3.4   5.5e-10   1.5e-06       1      35 []      26      60 ..      26      60 .. 0.98

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.5e-10
                 ---HHHHHHHHHHHH-SS--TTHHHHHHHHHHHCC CS
    PF06747.8  1 CgeEfkellsClkensdefskCrkefeafreCvkk 35
                 C+++ +e++ Clk++++e   C+ + +++ eC+++
  MMETSP0890-20130614|37925_1 26 CKPFAQEFMACLKSHGNEHVNCKQLSKKYLECRQN 60
                 *********************************96 PP

>> PF10203.4  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.1     4e-06     0.011      27      57 ..      31      60 ..      24      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4e-06
    PF10203.4 27 kspkeClkekkkelpeeCkalrkafleCkrg 57
                 +++  Clk++  +   +Ck+l k++leC+++
  MMETSP0890-20130614|37925_1 31 QEFMACLKSH-GNEHVNCKQLSKKYLECRQN 60
                 67889*****.677789************87 PP

>> PF08583.5  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00024      0.67      33      52 ..      24      43 ..      15      45 .. 0.84
   2 !    6.7   0.2     0.002       5.4      10      29 ..      44      63 ..      41      71 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00024
    PF08583.5 33 gkCneekeamkkClkeyrtd 52
                 g+C+  ++++++Clk + ++
  MMETSP0890-20130614|37925_1 24 GECKPFAQEFMACLKSHGNE 43
                 89*************99765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.002
    PF08583.5 10 rkeCaelikafaeChkdrtl 29
                 + +C++l k++ eC ++r+l
  MMETSP0890-20130614|37925_1 44 HVNCKQLSKKYLECRQNRGL 63
                 789************98655 PP

>> PF02297.12  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.4     3e-05     0.082      17      46 ..      31      59 ..      24      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3e-05
   PF02297.12 17 deYfkCldkkgedaneCkaerkeyesnCpk 46
                  e+ +Cl+ +g ++ +Ck++ k+y + C +
  MMETSP0890-20130614|37925_1 31 QEFMACLKSHGNEHVNCKQLSKKYLE-CRQ 59
                 689*********************66.765 PP

>> PF05051.8  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0011       2.9      30      46 ..      25      41 ..      19      44 .. 0.87
   2 ?    7.0   1.9     0.002       5.4      21      46 ..      35      62 ..      26      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
                 SCHHHHHHHHHHH---- CS
    PF05051.8 30 eCkklieaykaClrgeG 46
                 eCk + +++ aCl++ G
  MMETSP0890-20130614|37925_1 25 ECKPFAQEFMACLKSHG 41
                 6*************999 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.002
                 HHHHH----S..CHHHHHHHHHHH---- CS
    PF05051.8 21 eCilekgeee..CkklieaykaClrgeG 46
                 +C+  +g+e+  Ck+l ++y +C ++ G
  MMETSP0890-20130614|37925_1 35 ACLKSHGNEHvnCKQLSKKYLECRQNRG 62
                 6888999999999999999999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       375  (0.0274283); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.71
# Mc/sec: 411.77
//
Query:       MMETSP0890-20130614|37926_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       596  (0.0435927); expected 273.4 (0.02)
Passed bias filter:                      447  (0.0326946); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.39s 00:00:00.75 Elapsed: 00:00:01.01
# Mc/sec: 234.89
//
Query:       MMETSP0890-20130614|37919_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       567  (0.0414716); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.89
# Mc/sec: 869.69
//
Query:       MMETSP0890-20130614|37927_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-20   72.5   0.0    3.2e-20   72.1   0.0    1.2  1  PF07082.6 Protein of unknown function (DUF1350)


Domain annotation for each model (and alignments):
>> PF07082.6  Protein of unknown function (DUF1350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   2.4e-24   3.2e-20       4     205 ..      83     320 ..      80     344 .. 0.85

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 2.4e-24
    PF07082.6   4 eirgnwvlvprr.pvgvihflggafvatapqltyrwlleelge.agyvviatpfvntldhqaiarsvlnkleiilerlqkrgeltka...llpvyglghslgcklhlligslyeveragnilvafnnypakqaiplldklltal...........................aveftpspeetnkliqesyr.vrrn..lli...kfsnddidqtaalrkilrakfadlvtalklpgnhlt 205
                  ei+ + +  p r p g ihf+gga ++t p   y  ll++l++ +g + +atp+  +ldh a + ++  kl+ +l   +k  + ++a    +p++glghslg kl ll    +  +r   +  a nn+ ++++  l+  +l al                            v+  p pe t +++++s + v  n   li    f +d +d t  l + l ++      + +l g hl 
  MMETSP0890-20130614|37927_1  83 EIEDSLIFEPGRpPWGCIHFVGGAGLGTVPGAVYSELLQRLADvTGLGCVATPYELSLDHYAASYETRRKLDAALVAAHKTRDWPQAnsdSFPIFGLGHSLGAKLLLLQLDNHFYNRI--VCCAPNNFGIQDSARLFRSFLLALngknenyddntlwqnvldvalsaaqlaGVQVEPDPETTLQFLSRSANsVDYNktELItflSFIDDRLDSTNDLYDALGNRRQLKKNVYRLAGGHLE 320
                  777888888866269***************************84589****************************99999988776522269*************9987555555564..77899***********9999999999999999999**************99999**********998765424333224551126789**********9999888877788888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.90
# Mc/sec: 963.87
//
Query:       MMETSP0890-20130614|37923_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-15   57.7   0.2      4e-15   56.2   0.1    1.8  1  PF01408.17 Oxidoreductase family, NAD-binding Rossmann fold
    5.1e-07   29.3   0.0    1.2e-06   28.1   0.0    1.6  1  PF02894.12 Oxidoreductase family, C-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> PF01408.17  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   5.8e-19     4e-15      60     114 ..       6      62 ..       2      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 5.8e-19
                  ST.T-SEEEE-S-GGGHHHHHHHHHHTT-.EEEEESSS-SSHHHHHHHHHHHHHHT- CS
   PF01408.17  60 dp.kidavivatpngthadlalaaleagk.hvllEKPlattveeakelvelaekkgk 114
                  d    dav+va+pn++h+++++ +le+   h+l+EKP+att+e++++l+++ e++gk
  MMETSP0890-20130614|37923_1   6 DVaAFDAVVVAVPNHLHVEVCETFLEKTQaHILCEKPVATTLEDCERLARTIEQNGK 62 
                  44579**********************999***********************9985 PP

>> PF02894.12  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.7e-10   1.2e-06      13     101 ..      92     178 ..      84     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.7e-10
                  SEEEEEEEEEEECCSCHHCTTSSC.CHHCHHCCTTCHHHHHHHHHHHT-EEEEEEEEE-SCEE..CTCCCECCCE.EEEEEEEES-CEEEEE CS
   PF02894.12  13 vsvsvwflddragrpskkrwkrra.kkggGvlgdlgiHdiDllqwLfGeppsvvaalgrqrqv..aeateledaavsvlnlefgsgkvatle 101
                  +    +++++r++  +k++ ++r  +k+gG+l+++g+H++D  ++ +   p++v+a+g+q+ +  ++at++ d a   + l + +g+v tle
  MMETSP0890-20130614|37923_1  92 RLL--TIREHRFPFLRKVGLWNRDgNKTGGTLVEKGCHFFDFFRLCTKRKPTTVYARGGQCVNfiDSATDVLDHA---VVLLDFDGIVCTLE 178
                  555..56777777778888887778*********************************99765226666666666...77777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:01.00
# Mc/sec: 836.33
//
Query:       MMETSP0890-20130614|37943_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       216  (0.0157987); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:01.53
# Mc/sec: 1159.02
//
Query:       MMETSP0890-20130614|37950_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-33  116.6   0.2    1.8e-33  116.1   0.2    1.1  1  PF02668.11 Taurine catabolism dioxygenase TauD, TfdA family
     0.0019   18.5   0.1        1.1    9.6   0.0    2.5  2  PF13640.1  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF02668.11  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2   2.6e-37   1.8e-33      11     258 .]      48     320 ..      38     320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 2.6e-37
                  ---.E....E......EHHHHHHHHHH..HH---EEEE...---..S----TTT--------....-----.--.-SSB..S--TT...-SSGGG----........--SB-S-TTSSS----EEEEEEE-----.--EEEB---HHHHHHHHHHHHHHTTEEEEEE----SS-.....--EEEEEESEEE-.......---EEEE---TT.....TB...-S---S-HHHHHHHHHHSTTT-EEE------EEEE-TTT-BB----------S-EEE-EE CS
   PF02668.11  11 eie.gv...edllsdededlaelreal..aehgvvlfr...glp..lspeqfeelarrfgpleqsprntfy.ge.twdv..rsvka..nvkdaaytped....ttralplHtDlsylesppgvqlLhclenpaeG.GetlfvdgfaaynaLspelkellaegltyvysndgery...eeespekrhPlvrth.......pvtgekvlyvnp.latkiqglvtlaeseellkaledhltdpeftyrhkwqeGdlvifdNrrvlHgrtafddetgeRhllray 258
                  +ie g+    ++l+de  ++++ +++   ++ g+v++r    l+  l++++f++l+++fg++e++       g  +  v    +++   v+ ++ t+ +      ++  +HtD+s+++  p+ +lL+cl  pa G G+tlf++++  +n+L p+++e l+   t++++++++ +   +++s++    ++  +       p  +  +l   p ++ +++gl ++++s++l++al +++t+p+f+y+h w+  d v++ N+r++H++t+  + + +R ++r++
  MMETSP0890-20130614|37950_1  48 TIEhGSsspYETLNDE--KIKQCLQQAftDSLGLVVVRwkpALDrrLNKDEFLALCEAFGQVEYET---AVdGSfERLVdnDARIHefSVAPSSRTTMTtvqfDGEKPSWHTDQSFRKPRPEASLLYCLNTPANGvGQTLFASTVLSANELHPKVLEYLR--TTVARHSYSTLRtnlQNLSTSVDASVLTGDtdrfadyPLYNGDALDLAPhVIARVSGL-DNEQSKRLVHALVRFATAPKFVYAHVWNVDDTVLWSNHRLMHAATPVTTLPSNRLMWRTT 320
                  5555555443334444..66665544448899******555444656*************996444...3333333333333334444333333333336666667899**************************************************4..5555555555552332555666666655555566666665555556666566667789.**********************************************************96 PP

>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00016       1.1       8      49 ..     146     186 ..     139     215 .. 0.74
   2 !    6.6   0.0    0.0015        10      66      93 ..     287     315 ..     242     322 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
    PF13640.1   8 pggflspHvDnsesssrrltllly.lndpeweeeGGelelyps 49 
                  +g+  s+H+D s  ++r  ++lly ln+p   +  G++ ++  
  MMETSP0890-20130614|37950_1 146 DGEKPSWHTDQSFRKPRPEASLLYcLNTPA--NGVGQTLFAST 186
                  577779*****98777766666666**999..68888888754 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0015
    PF13640.1  66 pkpgrlvlFksdrslHrvtpv.gaqgrrl 93 
                   + +++vl+ + r++H++tpv +  + rl
  MMETSP0890-20130614|37950_1 287 WNVDDTVLWSNHRLMHAATPVtTLPSNRL 315
                  677899***************75444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:01.06
# Mc/sec: 816.12
//
Query:       MMETSP0890-20130614|37951_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-06   28.1   3.6    2.8e-06   27.2   2.5    1.5  1  PF01734.17 Patatin-like phospholipase
     0.0012   16.9   1.0      0.005   14.9   0.4    2.0  2  PF01735.13 Lysophospholipase catalytic domain


Domain annotation for each model (and alignments):
>> PF01734.17  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   2.5   4.1e-10   2.8e-06       2     202 ..      23     279 ..      22     281 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4.1e-10
   PF01734.17   2 vlsGGGtr.Gafslgalka..LkkelgdrfdiisGtSaGaiiaallalg.rdpaalvedlrelllnkffdrdl...............lirelaanlaarlsgllgpgglfdaealrellrkvlgdltlkrlsarlgklpllks.................lataaqavpaittataasastantanslytedded.dvpladavraSs.....afPglf.........ppvsldge.......lyvDGGildNnPila 202
                  ++sGGG+r  ++ lg + a  L  +l +++++ + tS+G+++ + ++   r+++ ++ ++  l +n+ ++++l                 ++ +++  a+   ++ pgg +d++a+  ++++  ++ t + ++ +    pl+                     t+   ++ +++++++s +++++a++ +    ++  + l  a+  Ss     a+ +lf          p+s++++       ly+DGG ++N+ + a
  MMETSP0890-20130614|37951_1  23 SFSGGGSRaFSSALGQICAlrL-LGLWPKVRYATSTSGGSWALTSYSYRnRSADTFLGNCSTLSKNLEISSPLaalsfpseasliedyTNLRGSQWIKAIAQIFIAPGG-ADPDAIMGWVNTSSNNNTASLYTPNEDPYPLIGIsiwgpasetprtngslrVITTGPFAVGTGLESNVSYNDNTFAFGGFVTPSNFpHMTLTTAAGFSSfaqggALATLFgkiintaagLPRSYTSNnitiqdmLYADGGTVENVHLSA 279
                  79******88999999999886.7999***************9777776588888889999999999999999888888888888885555555555555555555555.777777777776655555555555555555555567777777777777777667777888888888888888888877765555544************85555555555*********888888888888888**********97655 PP

>> PF01735.13  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   7.3e-07     0.005       1      85 [.      20      96 ..      20     126 .. 0.75
   2 ?    0.2   0.0     0.021   1.4e+02     290     329 ..     257     292 ..     138     303 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.3e-07
   PF01735.13  1 iaiavSGGGyramlsgaGvlkAldsRtdnatglgGlLqsatYlaGlsGgsWlvgslavNnftsvqellkk.teedsvwdlensivn 85
                 +++ +SGGG ra  s  G + Al         l Gl     Y + +sGgsW + s  + n +s +++l + +   +  ++++ + +
  MMETSP0890-20130614|37951_1 20 LGVSFSGGGSRAFSSALGQICALR--------LLGLWPKVRYATSTSGGSWALTSYSYRN-RSADTFLGNcSTLSKNLEISSPLAA 96
                 699********************9........*********************9997776.4555555554444444555555555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.021
   PF01735.13 290 qsivesktLdlvdggedgqniplvpllqkerkvdvifald 329
                  ++i+ ++ +   dgg + +n+ l+ llq  r v  ifa+ 
  MMETSP0890-20130614|37951_1 257 NNITIQD-MLYADGG-TVENVHLSALLQ--RGVTRIFAFF 292
                  2333333.3334554.457788888887..7777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      141  (0.010313); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:00.95
# Mc/sec: 1152.77
//
Query:       MMETSP0890-20130614|37957_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-09   35.5   0.0    2.2e-08   34.0   0.0    1.9  2  PF02798.15 Glutathione S-transferase, N-terminal domain
    1.7e-08   34.2   0.0    3.8e-08   33.1   0.0    1.5  1  PF00043.20 Glutathione S-transferase, C-terminal domain
    7.5e-05   22.7   0.0    0.00029   20.8   0.0    1.9  1  PF13417.1  Glutathione S-transferase, N-terminal domain
     0.0088   15.7   0.1      0.021   14.6   0.1    1.6  1  PF13410.1  Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.064   13.1   0.0       0.16   11.9   0.0    1.7  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   8.2e-12   2.2e-08      11      76 .]       3      55 ..       1      55 [. 0.88
   2 ?   -2.9   0.0       2.7   7.3e+03      69      75 ..     154     160 ..     147     161 .. 0.76

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 8.2e-12
                 HHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTTS-SSEEEETTTEEEESHHHHHHHHHH CS
   PF02798.15 11 raeslrillaekgveyeivrvdfeagegkspewlklnpkigrvPaledgdglklteSlAIarYlar 76
                 r++ ++++l e g+e++++           + + + +p+ ++vP l+dg +  ++eS+AI+ Yla+
  MMETSP0890-20130614|37957_1  3 RSPLVKWYLYERGIEFKEA-----------SPFPSNHPF-QQVPFLKDG-DCEVFESGAILLYLAD 55
                 5666788888888888888...........679******.*********.9*************96 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.7
                  HHHHHHH CS
   PF02798.15  69 AIarYla 75 
                   IarY+a
  MMETSP0890-20130614|37957_1 154 HIARYMA 160
                  5999988 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.4e-11   3.8e-08      34      94 ..     105     165 ..     101     166 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.4e-11
                  HHHHHHHHHHHHTSSSSSSSS-BHHHHHHHHHHHHHHHHTTTTTHTT-HHHHHHHHHHHHS CS
   PF00043.20  34 levlealeeelsgkkylvGdkltlADialfpalewlqrldgnfleeefPklkawlkriaar 94 
                  l++l++l++ ls++++lv+  l+ ADia++  l+++  + ++++ +  P++ +++  +a+r
  MMETSP0890-20130614|37957_1 105 LRALAVLDNLLSENDWLVDQDLSVADIAVASYLNYVPLFIPMIDLSLSPHIARYMAQCARR 165
                  689*****************************************9*************998 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00029      13      72 ..       7      58 ..       4      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.1e-07
                 HHHHHHH----EEE----TTTTHHHHHHH-TT--SSEEE----EEESHHHHHHHHHHH-- CS
    PF13417.1 13 vrlaLeekglpyelvevtpgkkrpellalnpkgkvPvLeddgevltdSlvIieyLeerfp 72
                 v ++L+e+g+++++           +   +p ++vP+L+d++  +++S +I+ yL ++f+
  MMETSP0890-20130614|37957_1  7 VKWYLYERGIEFKEASP--------FPSNHPFQQVPFLKDGDCEVFESGAILLYLADKFD 58
                 56777777777777654........44456***************************997 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   7.5e-06     0.021      13      68 ..     106     160 ..     105     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.5e-06
                  -THGGG------SS.-------HHHHHHHHHHHHHHHHH------TT----HHHHH CS
    PF13410.1  13 aaLdaleahLadgpfllGdrpslaDialapflvrldaagpgldireayPnlrawle 68 
                  +aL++l+++L  + +l    +s aDia+a  l ++ +  p++d ++  P+++++++
  MMETSP0890-20130614|37957_1 106 RALAVLDNLLSENDWLVDQDLSVADIAVASYLNYVPLFIPMID-LSLSPHIARYMA 160
                  79************99999*************99977777774.789999999985 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.7e-05      0.16      35      69 ..      22      55 ..       5      56 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.7e-05
                 HHHHHH------SEEE.----EEESHHHHHHHHHH CS
    PF13409.1 35 eellalsprgtVPvLwdkdgtvineSseIlrylne 69
                   ++  +p  +VP L d ++  ++eS +Il yl++
  MMETSP0890-20130614|37957_1 22 SPFPSNHPFQQVPFLKD-GDCEVFESGAILLYLAD 55
                 2467778889******7.456899*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.64
# Mc/sec: 797.54
//
Query:       MMETSP0890-20130614|37959_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 283.47
//
Query:       MMETSP0890-20130614|37990_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-06   27.3  10.3    3.4e-06   26.5   7.1    1.5  1  PF00628.24 PHD-finger
  ------ inclusion threshold ------
      0.066   13.1   0.9       0.11   12.4   0.7    1.4  1  PF11956.3  Ankyrin-G binding motif of KCNQ2-3
      0.066   12.3   0.2      0.066   12.3   0.1    1.6  2  PF09649.5  Histone chaperone domain CHZ
       0.28   11.2   7.0      0.067   13.2   2.6    1.7  2  PF13771.1  PHD-like zinc-binding domain
        2.8    7.8   6.1        1.6    8.6   2.2    2.0  2  PF13832.1  PHD-zinc-finger like domain
        4.9    6.4   8.6         26    4.1   6.0    2.1  1  PF13831.1  PHD-finger


Domain annotation for each model (and alignments):
>> PF00628.24  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   7.1   1.5e-09   3.4e-06       9      49 ..       3      47 ..       1      49 [. 0.84

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.5e-09
                 CTTS-EEEBS..SSSSEEETTTSSS-SSHHSHHST..TB-SCCCH CS
   PF00628.24  9 deegelvlCd..gCkewfHlkClglkleseekpeg..ewlCeeCk 49
                 d+++++v+Cd  +C +++H++C+++ l+ e++ +   +w+C+ C+
  MMETSP0890-20130614|37990_1  3 DDHNDIVMCDrkNCYRAYHMNCCDPRLDLEQIGDPddDWFCHLCE 47
                 459******9778************998777655566*******8 PP

>> PF11956.3  Ankyrin-G binding motif of KCNQ2-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7     5e-05      0.11      23      86 ..      92     154 ..      79     158 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5e-05
    PF11956.3  23 sllsvdheelers.fsGfsisqekedlalgasfaasavcarkrpylaeGesdtdsdlftPsgslP 86 
                  s+l++d +e   s  s fsisqek++    +s   s++ +++    +  +sd   dl   sg  P
  MMETSP0890-20130614|37990_1  92 SILALDLDEYHDSdDSDFSISQEKKNQQQQTS--DSSMKRENANNHSSDDSDEYDDLSMASGDDP 154
                  88999999987773699*********977766..4555444444455566777777777777666 PP

>> PF09649.5  Histone chaperone domain CHZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.5       3.3   7.4e+03       3      12 ..     139     148 ..     138     149 .. 0.73
   2 ?   12.3   0.1   2.9e-05     0.066       8      26 ..     170     187 ..     169     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3.3
    PF09649.5   3 eedeLeeIDt 12 
                  + de++ +++
  MMETSP0890-20130614|37990_1 139 DSDEYDDLSM 148
                  7788888887 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.9e-05
    PF09649.5   8 eeIDtsNIIssgRRTRgkt 26 
                  e +D+ NIIs g R R+++
  MMETSP0890-20130614|37990_1 170 EDVDERNIIS-GPRKRSRV 187
                  789******8.99977764 PP

>> PF13771.1  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.6     3e-05     0.067      42      86 ..       2      46 ..       1      51 [. 0.68
   2 ?   -3.4   0.0       4.3   9.8e+03      34      36 ..     118     120 ..     106     135 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3e-05
    PF13771.1 42 CkkkkGaciqCskkkCkrafHvtCakeag.llleeeekeeklksyC 86
                 C+ +   ++ C++k+C ra+H+ C   +  l +  +++++ ++ +C
  MMETSP0890-20130614|37990_1  2 CDDH-NDIVMCDRKNCYRAYHMNCCDPRLdLEQIGDPDDDWFCHLC 46
                 5555.66899*************98654303333334556666666 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.3
    PF13771.1  34 rrk 36 
                  +++
  MMETSP0890-20130614|37990_1 118 QQQ 120
                  222 PP

>> PF13832.1  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.2   0.00068       1.6      68      85 ..       8      25 ..       1      38 [. 0.84
   2 ?   -1.5   0.0      0.98   2.2e+03       3      17 ..      43      57 ..      41      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00068
    PF13832.1 68 ciqCskgeCktafHvtCa 85
                  ++C +++C++a+H++C 
  MMETSP0890-20130614|37990_1  8 IVMCDRKNCYRAYHMNCC 25
                 589**************7 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.98
    PF13832.1  3 CvlCkkkgGalkkts 17
                 C lC++ + a+ k +
  MMETSP0890-20130614|37990_1 43 CHLCETMERAINKIN 57
                 899988887776655 PP

>> PF13831.1  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.0     0.012        26       2      36 .]       6      47 ..       5      47 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.012
    PF13831.1  2 npllvCs..kCsvaVHasCY..Gvseesegee...WlCrrCe 36
                 n ++ C+  +C  a+H++C   +   e+ g++   W C  Ce
  MMETSP0890-20130614|37990_1  6 NDIVMCDrkNCYRAYHMNCCdpRLDLEQIGDPdddWFCHLCE 47
                 789****999*********8332333333333558******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1014  (0.0741662); expected 273.4 (0.02)
Passed bias filter:                      504  (0.0368637); expected 273.4 (0.02)
Passed Vit filter:                        52  (0.00380339); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.67
# Mc/sec: 768.98
//
Query:       MMETSP0890-20130614|37997_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-32  110.9   0.0    6.4e-32  110.6   0.0    1.1  1  PF01509.13 TruB family pseudouridylate synthase (N terminal domain)


Domain annotation for each model (and alignments):
>> PF01509.13  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   4.7e-36   6.4e-32      50     149 .]       3     104 ..       1     104 [. 0.98

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 4.7e-36
   PF01509.13  50 lgaetdteDaegeileeekveklteekleevlekftGeieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
                  lg etdt D+eg+i++++++++++++ le++le+f+G+i+q+ppm+SA+k++Gkrly+lar+g+++er++r+++i +lel+++++   ++ l+vec  GtYi
  MMETSP0890-20130614|37997_1   3 LGSETDTLDSEGQIIKTASWDHVNRACLEAALEDFRGDIMQTPPMFSALKKDGKRLYDLARNGITIEREARPIHIAQLELISFDKItgTFILDVECGGGTYI 104
                  89***************99*****************************************************************988899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.68
# Mc/sec: 510.99
//
Query:       MMETSP0890-20130614|38000_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.7   3.7      0.036   13.7   2.6    1.0  1  PF08614.6 Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> PF08614.6  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.6   2.7e-06     0.036      73     126 ..       3      56 ..       1      58 [] 0.91

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.7e-06
    PF08614.6  73 eqklaklreelaelhkkrgelaqrllllneeleekreeiaekekelaelqseik 126
                  e++l++    lae+  +    +++l +++++le++re++++  kel++l ++ +
  MMETSP0890-20130614|38000_1   3 EKELLNVSTKLAESCADYDISKKSLSETSSSLEKERETTRQLTKELESLLATKE 56 
                  6788899999***************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       999  (0.073069); expected 273.4 (0.02)
Passed bias filter:                      734  (0.0536864); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.62
# Mc/sec: 224.18
//
Query:       MMETSP0890-20130614|38004_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   16.7   0.1      0.003   16.6   0.1    1.1  1  PF02434.11 Fringe-like


Domain annotation for each model (and alignments):
>> PF02434.11  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.2e-07     0.003      58     111 ..      31      86 ..      11      90 .] 0.75

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.2e-07
   PF02434.11  58 vvtncsashsrkalsikmsaeydafleskk..kWfchvDDDnylnveaLlklLsky 111
                     +c  + s+  l +k++  +++ +++    kW ++v DD+++ ++aL   L+k 
  MMETSP0890-20130614|38004_1  31 PTVKCACEASHWGLPCKTACAFEESFRNAPlaKWHIRVMDDTVVDIDALAWHLDKL 86 
                  3346888888899*****99988777665446*****************9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      182  (0.0133119); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.91
# Mc/sec: 237.00
//
Query:       MMETSP0890-20130614|38005_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   12.9   0.0        1.2    8.9   0.0    2.2  2  PF07858.7 Limonene-1,2-epoxide hydrolase catalytic domain


Domain annotation for each model (and alignments):
>> PF07858.7  Limonene-1,2-epoxide hydrolase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0     9e-05       1.2      27      56 ..      54      83 ..      42     100 .. 0.74
   2 ?    1.4   0.0     0.019   2.6e+02      25      71 ..     197     245 ..     174     268 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9e-05
                 B-SS--BEETTS--B---HHHHHHH---TE CS
    PF07858.7 27 ftedtvyenvglstitGrdeaiallerlva 56
                  +++ +ye+  l+t++G d++++ll++ + 
  MMETSP0890-20130614|38005_1 54 CADEVIYEDLSLGTVHGADAVEELLRKKFP 83
                 445569*******************99843 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.019
                  GGB-SS--BEETTS--.B---HHHHHHH---.TEEEEEEEE..EE---- CS
    PF07858.7  25 elftedtvyenvglst.itGrdeaiallerl.vasiaavevkilriaad 71 
                  ++f+e+ +ye+   ++ i G+++ +++l+ + + +i  + ++i + + d
  MMETSP0890-20130614|38005_1 197 DFFDENIIYEDFNYPQpILGKSNLATFLDAFdIPGIEFFPLRISQGGGD 245
                  6788888888888774499************555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.67
# Mc/sec: 1148.11
//
Query:       MMETSP0890-20130614|38018_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-19   70.4   0.0    1.7e-19   69.7   0.0    1.3  1  PF13847.1  Methyltransferase domain
    2.9e-14   53.1   0.0      6e-14   52.1   0.0    1.6  1  PF08241.7  Methyltransferase domain
      6e-13   49.2   0.0    1.5e-12   47.9   0.0    1.7  1  PF12847.2  Methyltransferase domain
    4.9e-12   46.0   0.0    1.2e-11   44.8   0.0    1.7  1  PF08242.7  Methyltransferase domain
    1.4e-11   44.2   0.0      2e-11   43.7   0.0    1.2  1  PF13489.1  Methyltransferase domain
    2.4e-11   42.9   0.0      4e-11   42.2   0.0    1.4  1  PF02390.12 Putative methyltransferase
    1.4e-08   34.9   0.0    2.6e-08   34.0   0.0    1.5  1  PF13649.1  Methyltransferase domain
    3.6e-07   30.0   0.1    8.4e-07   28.9   0.1    1.6  1  PF13659.1  Methyltransferase domain
    8.2e-06   25.2   0.0    1.6e-05   24.2   0.0    1.5  1  PF05175.9  Methyltransferase small domain
    0.00032   19.3   0.0     0.0005   18.7   0.0    1.2  1  PF05958.6  tRNA (Uracil-5-)-methyltransferase
     0.0037   16.3   0.0     0.0057   15.6   0.0    1.2  1  PF01209.13 ubiE/COQ5 methyltransferase family
      0.005   16.4   0.0     0.0095   15.5   0.0    1.4  1  PF13679.1  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.052   12.8   0.0    1.5  2  PF07021.7  Methionine biosynthesis protein MetW
      0.043   12.8   0.0      0.083   11.8   0.0    1.5  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
       0.05   12.5   0.0      0.068   12.1   0.0    1.2  1  PF02353.15 Mycolic acid cyclopropane synthetase
      0.051   12.4   0.0      0.077   11.8   0.0    1.3  1  PF07091.6  Ribosomal RNA methyltransferase (FmrO)
      0.069   12.4   0.0        0.1   11.9   0.0    1.3  1  PF10294.4  Putative methyltransferase
      0.079   12.3   0.0       0.13   11.6   0.0    1.3  1  PF06080.7  Protein of unknown function (DUF938)
        0.1   11.8   0.0        1.6    7.9   0.0    2.2  2  PF02636.12 Putative S-adenosyl-L-methionine-dependent methyltransferase


Domain annotation for each model (and alignments):
>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   2.4e-22   1.7e-19       2     126 ..     111     233 ..     110     266 .. 0.88

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 2.4e-22
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespsllaelpeeleelsk 126
                  + +i+v ++GCG G ll++la  + p+a ++G++is  aie++++r q  +++nv ++ +++e l    +   fDl ++ +vl++ +dp + + + +r lkp g++i+ ++++l+++++++++   
  MMETSP0890-20130614|38018_1 111 QNQIRVAEIGCGGGNLLIALA-TQFPNAVFHGFEISDVAIEMCQQRIQASHLTNVYIHDARLEPLGA--NsTVFDLAFTYDVLHDAPDPYDLIAQTFRALKPTGAFIIGDIAALDSVANNIKNHPA 233
                  56899****************.99****************************************884..4478***************************************99999999888776 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   8.4e-17     6e-14       2      95 .]     118     215 ..     117     215 .. 0.96

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 8.4e-17
    PF08241.7   2 dvGcGtglllealaer.paarvtgvDlseemlatakerlkeegle...lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                  ++GcG+g+ll ala++ p+a + g+++s  +++ +++r+++++l+   +  a +e l  ++  fD+ + + vl+  +dp +++++  R Lkp G ++i
  MMETSP0890-20130614|38018_1 118 EIGCGGGNLLIALATQfPNAVFHGFEISDVAIEMCQQRIQASHLTnvyIHDARLEPLGANSTVFDLAFTYDVLHDAPDPYDLIAQTFRALKPTGAFII 215
                  79********************************************8888888999999999*********************************997 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   2.1e-15   1.5e-12       4     109 ..     115     215 ..     112     218 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2.1e-15
    PF12847.2   4 rilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsllerfDavllkgltldallal.deprrvlealpkllkpggrlvi 109
                  r+ ++GcG G+l+++la ++p+a ++g+++s+ ++e++++++++  l +++ ++ + ++   ++ + fD+++  +     +l+  ++p  ++++  ++lkp g ++i
  MMETSP0890-20130614|38018_1 115 RVAEIGCGGGNLLIALATQFPNAVFHGFEISDVAIEMCQQRIQASHL-TNVYIHDARLEPLGANSTVFDLAFTYD-----VLHDaPDPYDLIAQTFRALKPTGAFII 215
                  899***************************************65544.*******999444555555******99.....999999999****************98 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.7e-14   1.2e-11       2      98 ..     118     212 ..     117     213 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 1.7e-14
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldgg..ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  eiGcG G+ll al+ ++p++ ++g +is  aie  ++++++ +  n+   + + + l+         fD+++  +vlh ++d+ +++++  ++Lkp G 
  MMETSP0890-20130614|38018_1 118 EIGCGGGNLLIALATQFPNAVFHGFEISDVAIEMCQQRIQASHLTNVYIHDARLEPLG----AnsTVFDLAFTYDVLHDAPDPYDLIAQTFRALKPTGA 212
                  9*******************************88888888888644333333333332....13469*****************************996 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.7e-14     2e-11      22     119 ..     112     220 ..      80     249 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 2.7e-14
    PF13489.1  22 pggrvLDiGcGtGillellaengfd..vtgvDpspaaigk....akqaqksqfdeed.....aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpna 119
                  +  rv +iGcG+G+ll  la+++++  ++g+++s++ai++    ++ ++ ++ + +d       +++  fdl    +vl+  pdp  l++q +++lkp G +++ +  a
  MMETSP0890-20130614|38018_1 112 NQIRVAEIGCGGGNLLIALATQFPNavFHGFEISDVAIEMcqqrIQASHLTNVYIHDarlepLGANSTVFDLAFTYDVLHDAPDPYDLIAQTFRALKPTGAFIIGDIAA 220
                  3349******************9862355**********88877666666666555543332333667*********************************99987765 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   5.6e-14     4e-11      13      74 ..     105     167 ..      76     185 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 5.6e-14
                  TTTSGGGB-.EEEE--------HHHHHHH-TTSEEE---S-HHHHHHHHHHHHHH--TTB--- CS
   PF02390.12  13 kklfeneqk.lvleIGfGsGdflvalAkknPdklflGiEirqkvvekvlkkiealglkNlril 74 
                  +++++++++  v+eIG+G G++l+alA+++P+  f G Ei+   +e ++++i+a++l+N++i 
  MMETSP0890-20130614|38018_1 105 SSPYKQQNQiRVAEIGCGGGNLLIALATQFPNAVFHGFEISDVAIEMCQQRIQASHLTNVYIH 167
                  4455555556899************************************************96 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   3.7e-11   2.6e-08       1     101 []     116     211 ..     116     211 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 3.7e-11
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl.kvkfvqadaralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  + ++GCG+G+ + al++++   p++ ++g +is  a+e +++r+++++l +v  + a+++ l  ++  fdl ++ + +l+    ++  +l+++++r lkp G
  MMETSP0890-20130614|38018_1 116 VAEIGCGGGNLLIALATQF---PNAVFHGFEISDVAIEMCQQRIQASHLtNVYIHDARLEPLGANSTVFDLAFT-YDVLHD--APDPYDLIAQTFRALKPTG 211
                  579****************...679*******************99887888888899999*************.675775..5566678889999999876 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   1.2e-09   8.4e-07       3     112 ..     115     214 ..     113     216 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.2e-09
    PF13659.1   3 rvldpgcGsGtfllaalell.aalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlv 112
                  rv ++gcG G++l+a++ +  +a ++g+E++  a+++++++++  +l+ +v ++ + l+ l   + +  fdl +t   y   + a     d y  ++++ +r+lkp G++ 
  MMETSP0890-20130614|38018_1 115 RVAEIGCGGGNLLIALATQFpNAVFHGFEISDVAIEMCQQRIQASHLT-NVYIHDARLEPLG--ANSTVFDLAFT---YDVLHDA----PDPY-DLIAQTFRALKPTGAFI 214
                  89*****************99*********************999885.4444444444444..45555888888...4433222....2334.56888888888888875 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.2e-08   1.6e-05      31      90 ..     112     169 ..      93     219 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.2e-08
                  ------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-ST CS
    PF05175.9  31 lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdl 90 
                   + +v+++GcG G l +ala + p++  + ++i+  A+e++++ ++a +l+n  v+ +d+
  MMETSP0890-20130614|38018_1 112 NQIRVAEIGCGGGNLLIALATQFPNAVFHGFEISDVAIEMCQQRIQASHLTN--VYIHDA 169
                  45569*********************************************94..444443 PP

>> PF05958.6  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.9e-07    0.0005     177     248 ..      90     166 ..      66     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.9e-07
    PF05958.6 177 PnaavnekmleWalev...leeskgdllelycGnGnfslalaekfekvl..ateiakssveaaqanieankidnvqi 248
                  P ++++ k+l    +     ++++  + e+ cG Gn+ +ala++f   +    ei+  ++e+ q+ i+a +++nv i
  MMETSP0890-20130614|38018_1  90 PASTIARKILYQNNNSspyKQQNQIRVAEIGCGGGNLLIALATQFPNAVfhGFEISDVAIEMCQQRIQASHLTNVYI 166
                  6667777777554443111455556889*****************76542357*********************987 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.9e-06    0.0057      48     151 ..     113     215 ..      95     233 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.9e-06
   PF01209.13  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                    +v ++ +G g+l ++l+ +  +    ++ +i++  +++ +++++ +  +n+    a  e L  +   fD+      l + +D    + + +r lkp G++++
  MMETSP0890-20130614|38018_1 113 QIRVAEIGCGGGNLLIALATQFPN-AVFHGFEISDVAIEMCQQRIQASHLTNVYIHDARLEPLGANSTVFDLAFTYDVLHDAPDPYDLIAQTFRALKPTGAFII 215
                  34678899**********998865.56899***********************9999**************987777899********************9986 PP

>> PF13679.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05    0.0095      21      72 ..     108     162 ..      87     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
    PF13679.1  21 akeegsltvvDvGaGkgYLafvlasylkek..e.yklkvvgidvkeelvekaeel 72 
                   k++++++v+++G+G g L  +la  + ++  + ++++ v+i+++++ +++++  
  MMETSP0890-20130614|38018_1 108 YKQQNQIRVAEIGCGGGNLLIALATQFPNAvfHgFEISDVAIEMCQQRIQASHLT 162
                  68899********************666664533666668888888888877655 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.1   3.7e+03      55      95 ..      59      99 ..      53     101 .. 0.74
   2 ?   12.8   0.0   7.2e-05     0.052      13      56 ..     112     156 ..     109     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.1
    PF07021.7 55 kGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevl 95
                 kG+   ++d+ + ++  + k    vv+ q + a   ++++l
  MMETSP0890-20130614|38018_1 59 KGVPYNDKDICSAIDRAHRKHIRRVVIPQVIPASTIARKIL 99
                 67777777777777777888888888888888877777776 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 7.2e-05
    PF07021.7  13 pgsrvldlGcGdGellellkee.kqvdgrGleldeegvaecvakG 56 
                  ++ rv ++GcG G+ll  l+ +  +   +G e+++ ++  c ++ 
  MMETSP0890-20130614|38018_1 112 NQIRVAEIGCGGGNLLIALATQfPNAVFHGFEISDVAIEMCQQRI 156
                  5779************9997652467789************9984 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012     0.083     160     216 ..     111     167 ..     103     233 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
    PF06325.8 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNaelNkveakleva 216
                  +++ +v  +G+G G L ia a ++  +  ++  i +vA+++ ++ ++  ++++   ++
  MMETSP0890-20130614|38018_1 111 QNQIRVAEIGCGGGNLLIAlATQFPNAVFHGFEISDVAIEMCQQRIQASHLTNVY-IH 167
                  4445899***********945567777789*****************99998844.22 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.4e-05     0.068      65     111 ..     115     162 ..     108     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.4e-05
                  EEEE-------HHHHHHHHH--EEE.--BS-HHHHHHHHHHHHCS-SS CS
   PF02353.15  65 tlLdiGcGWGslvrraverydvkvv.glTlSkeqaklakqrvdeldle 111
                  ++ +iGcG G+l++  + ++   v+ g  +S+   ++++qr++++ l+
  MMETSP0890-20130614|38018_1 115 RVAEIGCGGGNLLIALATQFPNAVFhGFEISDVAIEMCQQRIQASHLT 162
                  6889***************9766644*****************98765 PP

>> PF07091.6  Ribosomal RNA methyltransferase (FmrO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011     0.077     107     168 ..     114     174 ..      77     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
    PF07091.6 107 asvlDlaCgLnplavpwmklaedatylasDidkalvefieaflallgvegevevrdlladvp 168
                   +v+ ++Cg   l +  +++ ++a+++++ i+   +e+ ++ +++ + ++ v ++d   ++ 
  MMETSP0890-20130614|38018_1 114 IRVAEIGCGGGNLLIALATQFPNAVFHGFEISDVAIEMCQQRIQASHLTN-VYIHDARLEPL 174
                  4799****************************************998865.45555554443 PP

>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014       0.1      22      98 ..      89     164 ..      77     212 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
    PF10294.4  22 WdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDlee.llellkknielnknalss 98 
                   +a+ ++ k l ++  ++++ +++++++v E+G G+G   ia+a++ p+a  +   +++ ++e+ ++ i++ +++++ 
  MMETSP0890-20130614|38018_1  89 IPASTIARKILYQNN-NSSPYKQQNQIRVAEIGCGGGNLLIALATQFPNAVFHGFEISDvAIEMCQQRIQA-SHLTNV 164
                  567777777777754.446788999*********************9888777666666578888888888.444444 PP

>> PF06080.7  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018      0.13      24      78 ..     111     165 ..      93     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00018
    PF06080.7  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlk 78 
                  +++ rv Ei+ G G+  + +A+++pn+ +   +  +   e  ++ +++  l+n++
  MMETSP0890-20130614|38018_1 111 QNQIRVAEIGCGGGNLLIALATQFPNAVFHGFEISDVAIEMCQQRIQASHLTNVY 165
                  34449***********************999998888887778888887788775 PP

>> PF02636.12  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.18   1.3e+02      51      76 ..      32      57 ..      20      88 .. 0.75
   2 ?    7.9   0.0    0.0022       1.6      15      63 ..     109     149 ..      93     204 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.18
   PF02636.12 51 leyhlvEaspklrelQkellkekakk 76
                  e+ l+E+ p+l+e+ ++ l ++  +
  MMETSP0890-20130614|38018_1 32 YEISLIEMMPSLMERARSVLPNAFRT 57
                 6899************9999776554 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0022
   PF02636.12  15 rpskklrlvElGpGrGtLmadvlrtlrkfepeflesleyhlvEaspklr 63 
                  ++++++r+ E+G G G L+  +   + +          +h  E+s    
  MMETSP0890-20130614|38018_1 109 KQQNQIRVAEIGCGGGNLLIALATQFPNA--------VFHGFEISDVAI 149
                  34488*************98877777665........334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.62u 0.40s 00:00:01.02 Elapsed: 00:00:00.77
# Mc/sec: 939.87
//
Query:       MMETSP0890-20130614|38020_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.2   0.0      0.007   16.0   0.0    1.6  1  PF00168.25 C2 domain


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.1e-07     0.007      19      81 ..     166     225 ..     150     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.1e-07
                  SS-EEEEEEEECTTEEEEEE--BSS-SSEEEE.EEEEEEESCGGGTE..EEEEEEECHSSSCSEE- CS
   PF00168.25  19 tsdpyvkvslggakskkkrTrvikntlnPvWn.ekftfevvaeelae..leleVkdedrfgkddfl 81 
                   ++py ++ +g+     +rT++  nt  P ++ e++++    ++l++  l ++V d++  +k++ l
  MMETSP0890-20130614|38020_1 166 PINPYLRLACGD---VFARTKILFNTKTPNFKsESLEIF---APLDNdiLDITVLDYNAGRKNQWL 225
                  679*********...569**************9999988...3444447*********99988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 1006.47
//
Query:       MMETSP0890-20130614|38027_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-08   33.5   0.1    0.00059   19.2   0.0    2.3  2  PF01963.12 TraB family


Domain annotation for each model (and alignments):
>> PF01963.12  TraB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.3e-08   0.00059      11     145 ..       2     121 ..       1     144 [. 0.72
   2 !   12.2   0.0     6e-06     0.082     201     243 ..     228     291 ..     191     300 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.3e-08
   PF01963.12  11 eiyLlGTaHvsdkslepvrkaiekalekadavvvEleeasakalaklpelamlpdgprlqsllspeewakldealkkrg..iplqalkkgkpwllalslalaafqkglakdl.gvdpglemraaaegakvlg....Ledrei 145
                  +i + G +H s+ s+ +v++aie    k+da+v+El                  + +r++sl +++ ++ ++e  ++     ++++l+ g ++ l +      f   +a++  g++pg e+     +ak++g    L+d e+
  MMETSP0890-20130614|38027_1   2 SIVIQGVVHGSSVSIRDVSDAIEY--LKPDAIVLEL------------------CVSRWRSLKQRKNKTSIQEEIEAIAsaSRSASLRGGSVAGLTAATVGTLF--AIARQGaGLEPGKEFHLPLMHAKAQGkhviLGDKEF 121
                  58899******************9..**********..................98888888888888888776555443345588888888777666666666..333332277777776655555555555555666666 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6e-06
   PF01963.12 201 spelyevlldeRnrywaeklkellkgg.....................gkvvvVVGagHlpGek 243
                  +++l +v+l +R+  +a+++ ++ + +                     ++v+v+VGa+H++G+ 
  MMETSP0890-20130614|38027_1 228 LANLGQVFLMRRDIVLANSILDAFELPlpqtdrnkrrekqdqrptprvKTVLVIVGALHVNGIV 291
                  5678899999999999999996666666666688999999999999****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:01.12
# Mc/sec: 667.56
//
Query:       MMETSP0890-20130614|38033_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      199  (0.0145553); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.33s 00:00:00.68 Elapsed: 00:00:00.69
# Mc/sec: 364.66
//
Query:       MMETSP0890-20130614|38040_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-60  203.1   0.1    2.7e-60  202.7   0.0    1.2  1  PF01154.12 Hydroxymethylglutaryl-coenzyme A synthase N terminal
    1.7e-59  201.5   0.7    4.1e-58  196.9   0.5    2.0  1  PF08540.5  Hydroxymethylglutaryl-coenzyme A synthase C terminal
    0.00055   19.7   0.0     0.0015   18.3   0.0    1.7  2  PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal


Domain annotation for each model (and alignments):
>> PF01154.12  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.0   5.9e-64   2.7e-60      17     173 ..       2     155 ..       1     156 [. 0.96

  Alignments for each domain:
  == domain 1    score: 202.7 bits;  conditional E-value: 5.9e-64
   PF01154.12  17 qyvdqaelekfdeveagkytiglgqtkmgfvtdredinslcltvvqkllern.nldydkigrlevgtetiidksksvksvlmqlfeesgntdvegidtlnacyggtaalfnalnwiessswdgryalvvagdiaiyakgaarptggagavalligpda 173
                  +yvdq  lek d+ e gkyt glgq++m+f+ dredi s+ ltv ++ll ++ ++++++igrlevgte++idksks+k+++       g  d egi ++nacyggtaa+fn++ wiess+wdgrya++++gdia+y+kg arp+ggaga a ligp+a
  MMETSP0890-20130614|38040_1   2 NYVDQRVLEKEDNCE-GKYTKGLGQEQMSFCDDREDIGSILLTVAHRLLAKYpEIKIEQIGRLEVGTESLIDKSKSIKTTIAGA---LGIKDAEGITSINACYGGTAAFFNSVAWIESSAWDGRYAMLLCGDIAVYEKGPARPSGGAGAFAALIGPNA 155
                  69********99985.********************************988758*************************98755...5779*****************************************************************98 PP

>> PF08540.5  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.5   9.1e-62   4.1e-58       4     280 ..     160     403 ..     157     405 .. 0.92

  Alignments for each domain:
  == domain 1    score: 196.9 bits;  conditional E-value: 9.1e-62
                  -------EE----SEE---TT-S--EE---HHHHHHHHHHHHHHHHHHHHHHHHHHH------GGG-S---B--SSHHHHHHHHHHHHHHHHHH.S-HHHHHHH----TT-----GGGGGT-HHHHHHHHHHHHHHHHHHTGGGGHHHHH----GGGS----HHHHHHHS-HHHH---EE-EEE-----EEEEEEEEE-S------HHHHHHHTTTTHHHHHHTSEEE-HHHHHHHHHHHHHHTT--SB-----.GGGS----EEEEEE-TTS-EEEE CS
    PF08540.5   4 drklrashmehayDFykPdlaseYPvvDGklslqcYlkAldscYksyskkvekqlkkkdkkfslddfdyvvfHsPycklvqkslarllynDflaeaskekkeevkekleelkglkledsytdrdlekallelskelfkkkvkpslllpkqvGnmYtaslyaalasllsskkadelagkrvllfsYGsGlaaslfslkvkqdasaksildkliakvldlkkkldsRkkvsPeefeealelrekahlkkefkpkgs.idsLfpgtyyLeevDdlyRRsYa 280
                  +  lr++ + +++DFykP+  seY +vDGkls+ cYl+ +d c++++++k  ++      ++++++fd+++fH+Py+klvqk+++rl++                  l+e++g ++e +++d+ l+  l + s++ f  kv ps llpk++Gn Ytas++ +l sl+ + +     ++r+llfsYGsG  as++sl+v++  +       l +++ d + +ld+R+  s ++f +al  re  + + +++p++s   sL++gt+ L ++D+ yRRsY 
  MMETSP0890-20130614|38040_1 160 E-PLRSTCVLDVWDFYKPK-HSEYALVDGKLSQACYLRSVDLCWHQLQQKLSQV------QDHMNYFDFYAFHAPYNKLVQKGFGRLFLSS----------------LSEFDGEEYEATLFDKTLDIELRQKSADAFTSKVLPSALLPKRIGNTYTASVFLGLCSLVPHLQ----PNQRILLFSYGSGSLASMYSLRVTTSIQD------LASRLGDPRVRLDARTACSFDQFSNALLAREAIYGQCDISPSSSdLPSLSSGTFALAHIDEHYRRSYV 403
                  5.6899999*********8.7*****************************8554......589************************8743................45566668999*************************************************5444....469********************988777......77889999********************************9987689********************6 PP

>> PF08541.5  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.5     7e+03      24      50 ..      78     105 ..      74     106 .. 0.74
   2 !   18.3   0.0   3.3e-07    0.0015      43      84 ..     284     323 ..     276     329 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.5
                  HHHHHHH----TTEE--GG.GT----TT CS
    PF08541.5  24 idavakrlglpeekvvvnl.deyGntsa 50 
                     +a  lg+++++ ++++ + yG t+a
  MMETSP0890-20130614|38040_1  78 KTTIAGALGIKDAEGITSInACYGGTAA 105
                  4458889999998888877688888876 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.3e-07
                  GT----TTHHHHHHHHHHHC---------EEEE--------- CS
    PF08541.5  43 deyGntsaasiplaLdeaveegklkpgdlvllvgfGaGlswg 84 
                  +++Gnt +as++l L+ +v    l+p++++ll++ G G    
  MMETSP0890-20130614|38040_1 284 KRIGNTYTASVFLGLCSLVP--HLQPNQRILLFSYGSGSLAS 323
                  689*****************..9***************7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.78
# Mc/sec: 1247.33
//
Query:       MMETSP0890-20130614|38047_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-16   60.3   0.0    3.2e-16   59.1   0.0    1.7  2  PF00069.20 Protein kinase domain
    2.2e-08   33.4   0.0      5e-08   32.2   0.0    1.5  1  PF07714.12 Protein tyrosine kinase
    1.6e-07   30.9   2.0    3.2e-07   29.9   1.4    1.5  1  PF00397.21 WW domain
  ------ inclusion threshold ------
        0.8    9.8   7.7          8    6.5   1.2    2.4  2  PF05130.7  FlgN protein
        1.9    8.6   8.6        2.8    8.0   1.9    2.8  3  PF13864.1  Calmodulin-binding
        2.4    8.4   5.3          8    6.7   0.8    2.5  2  PF06156.8  Protein of unknown function (DUF972)


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.4e-19   3.2e-16     156     260 .]       3      99 ..       1      99 [. 0.84
   2 ?   -3.0   0.0       1.3   2.9e+03     197     226 ..     377     406 ..     363     436 .. 0.56

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.4e-19
                  SS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 156 ttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  +t  gt+ YmAPE+ll +k y+ kvD+Ws G++lye++  k  f  +   +  +l++ +l+++ +e e+     s++++ l+++ll+kdp++R+ + ++l+ p++
  MMETSP0890-20130614|38047_1   3 KTTIGTPIYMAPELLL-EKSYDYKVDLWSTGCVLYEICRLKKAFFAR---SIASLVHLVLHGSPPELES----LSSDFRTLVSDLLAKDPERRPDISQVLSLPYV 99 
                  7889************.**********************99999988...4455555555544444433....3489***********************99985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.3
                  -TTTSTHHHHHHHHHCCCHHTTS--GGGGC CS
   PF00069.20 197 lpfsgeseedqleliekilkkkleedepks 226
                  +p+ + ++ed+l+++ ++l++k+e++++ +
  MMETSP0890-20130614|38047_1 377 TPLLKPRQEDDLSTLLSKLQQKVEKQHDLT 406
                  555555566666666666666666665544 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.2e-11     5e-08     170     256 ..      10      94 ..       2      96 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 2.2e-11
                  GGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
   PF07714.12 170 kWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelv 256
                   +mapE+l ek++  k D Ws G++l+Ei+ l +  +   s +++++l+ +g   ++ e+ ++++ +l+++ ++++pe+Rp+++++ 
  MMETSP0890-20130614|38047_1  10 IYMAPELLLEKSYDYKVDLWSTGCVLYEICRLKKA-FFARSIASLVHLVLHGSP-PELESLSSDFRTLVSDLLAKDPERRPDISQVL 94 
                  59*****************************8855.555566677777777765.5566799*********************9986 PP

>> PF00397.21  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   1.4   1.4e-10   3.2e-07       3      31 .]     132     160 ..     130     160 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.4e-10
                  -S.EEE.E.E----EEEEETTT--EESS-- CS
   PF00397.21   3 pg.WeersddddGrvYYyNheTgetqWekP 31 
                   g W++r++ + G ++Y+N  +g++qWe P
  MMETSP0890-20130614|38047_1 132 KGwWKKRDPAS-GYWFYVNEVSGQSQWEVP 160
                  68788999766.****************99 PP

>> PF05130.7  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0044        10      24      61 ..     259     296 ..     256     340 .. 0.83
   2 ?    6.5   1.2    0.0035         8      14      82 ..     363     435 ..     358     453 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0044
    PF05130.7  24 leeEqeaLkagdieaLeelteeKeellaeleeleeerq 61 
                  l ++++aL +g ++ L +l e+ ++l ++l++l ++ +
  MMETSP0890-20130614|38047_1 259 LSDKKDALDKGPASWLGDLEERMQKLQTQLQQLPRKES 296
                  67899***************************995544 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0035
    PF05130.7  14 lelleeLlelleeEqeaLkagdieaLeelteeKeellaeleeleeerqklleelgleaeeatlsella....e 82 
                  ++l+e Ll+    E+ +Lk ++ ++L++l+++ ++ +++ ++l   +q++ ++lg+e+++++l++ l+    +
  MMETSP0890-20130614|38047_1 363 CSLYEYLLQKQGSETPLLKPRQEDDLSTLLSKLQQKVEKQHDLTVHIQAIRQTLGQESSNSKLEQSLRqlktH 435
                  6788999999999********999********************99999999999998888888877765541 PP

>> PF13864.1  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         2   4.5e+03      82      96 ..     181     195 ..     159     199 .. 0.57
   2 ?    2.8   0.0     0.054   1.2e+02      46      65 ..     274     293 ..     267     307 .. 0.82
   3 ?    8.0   1.9    0.0012       2.8      33      87 ..     379     433 ..     366     437 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2
    PF13864.1  82 elaeiEedikklskk 96 
                   lae E+ i+++s++
  MMETSP0890-20130614|38047_1 181 VLAEREKRIRIMSQP 195
                  356666666666654 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.054
    PF13864.1  46 legLkkkweelnkelqklpl 65 
                  l +L++++++l+++lq+lp 
  MMETSP0890-20130614|38047_1 274 LGDLEERMQKLQTQLQQLPR 293
                  56789999999999999985 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0012
    PF13864.1  33 gvrllseeErlellegLkkkweelnkelqklplvldtlskkrrkeelEkelaeiE 87 
                   ++  +e++  +ll++L++k e+ ++   ++  + +tl++++  ++lE++l+++ 
  MMETSP0890-20130614|38047_1 379 LLKPRQEDDLSTLLSKLQQKVEKQHDLTVHIQAIRQTLGQESSNSKLEQSLRQLK 433
                  5555579999**************99999***********************996 PP

>> PF06156.8  Protein of unknown function (DUF972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.057   1.3e+02      35      58 ..     278     301 ..     271     346 .. 0.51
   2 ?    6.7   0.8    0.0035         8      22      65 ..     386     429 ..     382     444 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.057
    PF06156.8  35 leenaelkleneklrerleeleee 58 
                   e+ ++l+++ ++l ++ ++++++
  MMETSP0890-20130614|38047_1 278 EERMQKLQTQLQQLPRKESKQNAA 301
                  334444444444444443333332 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0035
    PF06156.8  22 eeleelkkelkelleenaelkleneklrerleeleeeekkkekk 65 
                  ++l++l ++l++ +e+++ l++ ++++r+ l ++++++k +++ 
  MMETSP0890-20130614|38047_1 386 DDLSTLLSKLQQKVEKQHDLTVHIQAIRQTLGQESSNSKLEQSL 429
                  56788889999999999999999999999999887744443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1053  (0.0770187); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:00.91
# Mc/sec: 1292.98
//
Query:       MMETSP0890-20130614|38054_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-05   23.9   0.0    5.3e-05   23.0   0.0    1.5  1  PF00789.15 UBX domain
  ------ inclusion threshold ------
      0.064   13.1   8.6        0.1   12.4   6.0    1.3  1  PF05680.7  ATP synthase E chain
       0.41   10.0  11.5       0.56    9.5   8.0    1.2  1  PF03280.9  Proteobacterial lipase chaperone protein


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   5.3e-05       2      49 ..      72     121 ..      71     151 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-08
                  TTSSEEEEEEEE----EEEEEEE.SSSBHHHHHHHHHHHHSGCCTS.EEE CS
   PF00789.15   2 eaedvcrlqiRlpDGsrlvrrFk.ksdtvesvyeyvdshldekeep.FkL 49 
                  +++d++++++R p G+r+ rrF  ++ t+ ++ ++vd  l+ ++++ F+L
  MMETSP0890-20130614|38054_1  72 SNKDAITIALRDPAGKRHSRRFApPDATTDKLADWVDALLHIDLQSqFRL 121
                  57899*****************97999***************99887555 PP

>> PF05680.7  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.0   2.2e-05       0.1      32      82 ..      20      69 ..      12      84 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
    PF05680.7 32 lkakakkeekereyeaqekliekakaayakkkqakseakslaegssakidl 82
                 l+ ++  +e +++++aq+k+++ ak+a++kk+++ ++ ++ +++++++ ++
  MMETSP0890-20130614|38054_1 20 LE-QEHSAEIQAQIAAQAKELQLAKEAEEKKQAEATKKRRELAAQNLPAEP 69
                 55.6778999**************************988888888899887 PP

>> PF03280.9  Proteobacterial lipase chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.0   0.00012      0.56      71     132 ..       2      63 ..       1      72 [. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00012
    PF03280.9  71 IkqdasLsdeqkaqrlaaleaqlPeelrearreaallqelaqateelqkqgasaqelraara 132
                  I+++++L  eqk++r  ale++  +e++++++++a+  +la+++ee ++++a+++    a++
  MMETSP0890-20130614|38054_1   2 IRKENALALEQKTERRVALEQEHSAEIQAQIAAQAKELQLAKEAEEKKQAEATKKRRELAAQ 63 
                  7788999************************************9977777777665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1684  (0.123171); expected 273.4 (0.02)
Passed bias filter:                      978  (0.0715331); expected 273.4 (0.02)
Passed Vit filter:                       109  (0.0079725); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.78
# Mc/sec: 516.14
//
Query:       MMETSP0890-20130614|38057_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-05   20.9   0.1      7e-05   20.9   0.0    1.0  1  PF00063.16 Myosin head (motor domain)


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.1e-09     7e-05     261     342 ..       2      92 .]       1      92 [] 0.78

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.1e-09
                  HHHHHH-----EEEECTTCCC..............EESTHHHHHHHHHHHTS-HHHHHHHHHSEEEEESSEEEEEE-BHHHHHHHHHHHHHHHHHH CS
   PF00063.16 261 lAaiLhlGnikfkedqkeeqa..............vvedkeelekiaellgvdveelekallkrriktgrevvtkalnkeqaedardaLakaiYsr 342
                  lAa+ hl ++ fk+ ++  ++              + ++  +l+++a  lgvd++el++al++rr+      v  + +  +a+ a +a+aka+Ysr
  MMETSP0890-20130614|38057_1   2 LAAVCHLLDLVFKDIEDT-SGsegskvdthdlfqgKNHSIPALQAAALALGVDQKELSEALISRRVA----GVRAPRTAAEADIANQAFAKALYSR 92 
                  678888888888877733.333667777788774344444559999***************999886....57889******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.93
# Mc/sec: 237.06
//
Query:       MMETSP0890-20130614|38056_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   37.2   0.0      3e-09   36.6   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.2e-13     3e-09       7      94 .]      72     173 ..      67     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2.2e-13
                  CT-EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEG.GGT-S-TTCCTTTS.TT...............-EEEEEEEEE CS
   PF00254.23   7 egdtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltipp.elaYgekglaggkippn...............atlvfevell 94 
                   g+ +++ y +++e +     ++++ k++ ++ G+g+ i+gl+egl +m+ G+kr++++p  +l+Y   gl +   p++               at+vf+v ll
  MMETSP0890-20130614|38056_1  72 WGQLLKIAYSISVESSNDSPIKIDERKEYLVHHGNGRTIRGLDEGLHTMRIGGKRRIEVPNqNLGYVTPGLGP--LPESaatrrtfnkalskldATVVFDVALL 173
                  5889999******8655555555699**********************************8799****88844..4444566777777777777******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       294  (0.0215038); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.66
# Mc/sec: 769.74
//
Query:       MMETSP0890-20130614|38061_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    7.6   8.1        5.6    6.8   5.6    1.4  1  PF05680.7 ATP synthase E chain


Domain annotation for each model (and alignments):
>> PF05680.7  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.6   0.00041       5.6      25      81 ..       6      61 ..       4      72 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00041
    PF05680.7 25 Gakhqrslkakakkeekereyeaqekliekakaayakkkqakseakslaegssakid 81
                 G++  r+ + +a+++ +++e +a++++i++ak+  + +   +   k++a+ + a i+
  MMETSP0890-20130614|38061_1  6 GIYDTRRKN-EARRASEIQEFKARQAEIAEAKRRAEEEAMREAARKKAAAEKAARIE 61
                 777777766.89999999999999988888887665555555544444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       994  (0.0727033); expected 273.4 (0.02)
Passed bias filter:                      584  (0.042715); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.93
# Mc/sec: 700.87
//
Query:       MMETSP0890-20130614|38086_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.1   2.4       0.37   10.3   1.7    1.9  1  PF13903.1 PMP-22/EMP/MP20/Claudin tight junction
        8.8    5.9   6.8        1.1    8.8   1.3    2.0  2  PF07234.6 Protein of unknown function (DUF1426)


Domain annotation for each model (and alignments):
>> PF13903.1  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7   5.4e-05      0.37      60     170 ..     166     290 ..      63     292 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.4e-05
    PF13903.1  60 s..........atalldltrvvivflllgl...vlillaavlallaslkksk.tlllltgvllllagilillavvlyvqkvq...leikrnvqtwqselqnnvlaslgwSfylvvvgivlvllaglLl 170
                  +          + + ++lt + ++  +l+    ++ +l + + +la++ + +   + +  +++l ++i+++ ++ l    ++   +++ +n+++ q+ +   ++  +  Sfy++++++vl +l ++Ll
  MMETSP0890-20130614|38086_1 166 KkkhhrlwrpaIDIGQHLTLFLAYEWALCApdsIFTFLTVPF-ILAAPYNTRtPDCANILIAHLRSAICTASTTNL--DALEralKNKSENFKGAQDIHVPTGTSLVPRSFYFACAAFVLIVLLIILL 290
                  044444454555556666666666666666443333433333.444444444233344556888888888888444..4444112344555666666667777999999**************99998 PP

>> PF07234.6  Protein of unknown function (DUF1426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.49   3.3e+03      10      31 ..     187     209 ..     184     212 .. 0.79
   2 ?    8.8   1.3   0.00016       1.1      15      38 ..     273     296 ..     266     300 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.49
    PF07234.6  10 lffewflff.gaifiaitilyil 31 
                  l +ew l    +if  +t+ +il
  MMETSP0890-20130614|38086_1 187 LAYEWALCApDSIFTFLTVPFIL 209
                  57899987636899999999998 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00016
    PF07234.6  15 flffgaifiaitilyillvlllev 38 
                  f f  a f+ i +l ill+ll+e+
  MMETSP0890-20130614|38086_1 273 FYFACAAFVLIVLLIILLALLVEL 296
                  8999******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      428  (0.0313049); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.41s 00:00:01.06 Elapsed: 00:00:00.88
# Mc/sec: 928.59
//
Query:       MMETSP0890-20130614|38091_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   22.1   0.0    0.00027   20.8   0.0    1.8  1  PF00789.15 UBX domain


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-08   0.00027       6      46 ..     288     328 ..     277     387 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2e-08
                  EEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTS CS
   PF00789.15   6 vcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeep 46 
                   +rl++R+pD s + r+F+++  +  v e+v+ +l +   +
  MMETSP0890-20130614|38091_1 288 GIRLRLRFPDASFIDRTFPEDALLANVLEFVYVNLPDPPSS 328
                  589*******************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1495  (0.109348); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.37s 00:00:01.14 Elapsed: 00:00:00.91
# Mc/sec: 1029.64
//
Query:       MMETSP0890-20130614|38095_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.42s 00:00:01.07 Elapsed: 00:00:00.94
# Mc/sec: 833.63
//
Query:       MMETSP0890-20130614|38102_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-25   87.4   0.0      1e-24   87.1   0.0    1.1  1  PF03652.10 Uncharacterised protein family (UPF0081)
  ------ inclusion threshold ------
      0.036   14.2   1.0      0.054   13.7   0.1    1.7  2  PF12610.3  Suppressor of cytokine signalling


Domain annotation for each model (and alignments):
>> PF03652.10  Uncharacterised protein family (UPF0081)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.5e-28     1e-24       3     133 ..       7     136 ..       5     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 1.5e-28
   PF03652.10   3 ilglDvGtkriGvAvsdelgilaspletie.rkskkkdleelkelvkeeeveeiVvGlPlnmdgseseqakkvkkfaeeLekrl....kklpvelvDErlttveaerilresglkkkkrkkvvDklAAviILqsyL 133
                  ++g+D+G +riGv v+    + ++pl+++e  +++++ + +l +++k+e+++ +VvGlPl+ +gses+q++ +++fa++L +      ++ +v+l+DEr++++eae  ++    +++   + +D++AA+ IL +y 
  MMETSP0890-20130614|38102_1   7 MIGVDYGLRRIGVGVGAG--WASRPLSILEhCRNDTRVCLDLVKIAKSESASSFVVGLPLEKNGSESQQSNLTRTFAQRLIDISaqclPRAQVILWDERFSSQEAEALVA----HSRSPPEFIDSIAACSILDDYY 136
                  79*************997..568*******555558999*****************************************88774445667***************8885....5678899***********9995 PP

>> PF12610.3  Suppressor of cytokine signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   7.9e-06     0.054      27      52 ..      68      93 ..      52      94 .. 0.88
   2 ?   -2.4   0.0      0.81   5.5e+03      21      31 ..     161     171 ..     152     178 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.9e-06
    PF12610.3 27 dgesrrslssRsLRQklqDAvGqCfP 52
                  +es +s+ +R++ Q+l D   qC+P
  MMETSP0890-20130614|38102_1 68 GSESQQSNLTRTFAQRLIDISAQCLP 93
                 5799*********************9 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.81
    PF12610.3  21 sstetedgesr 31 
                  s +e++ +es+
  MMETSP0890-20130614|38102_1 161 SREEADRHESG 171
                  44444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.61
# Mc/sec: 738.55
//
Query:       MMETSP0890-20130614|38116_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       116  (0.00848449); expected 273.4 (0.02)
Passed bias filter:                       98  (0.00716793); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 222.82
//
Query:       MMETSP0890-20130614|38120_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       689  (0.050395); expected 273.4 (0.02)
Passed bias filter:                      522  (0.0381802); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.70
# Mc/sec: 393.69
//
Query:       MMETSP0890-20130614|38117_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.83
# Mc/sec: 895.02
//
Query:       MMETSP0890-20130614|38126_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-25   87.8   0.0    7.8e-25   87.7   0.0    1.0  1  PF08282.7 haloacid dehalogenase-like hydrolase
      2e-07   30.4   0.0    2.1e-07   30.3   0.0    1.1  1  PF05116.8 Sucrose-6F-phosphate phosphohydrolase
  ------ inclusion threshold ------
      0.062   13.3   0.0      0.066   13.2   0.0    1.2  1  PF12710.2 haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PF08282.7  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   1.7e-28   7.8e-25     149     243 ..       9     103 ..       1     105 [] 0.81

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 1.7e-28
                  -GGGHHHHHHHHHCCTTTTC..EEEEEETTEEEEEE----HHHHHHHHHHHTT--GGGEEEE----TTHHHHHH-TEEEE-TTS-HHHHHH-SEE-- CS
    PF08282.7 149 dkedldelekelkeelnkli..titsssegsleiipkgvsKgtalkklakalnisleeviafGDgeNDieMLelaglgvAmgnaspevkaaAdyvtd 243
                  d+   d++  +l+e+ ++l    +  s ++++e+++++v Kg++lk l+++l+i+l+ viafGDg+ND+e L+++g+g+Am+na+p+  a+Ad +t+
  MMETSP0890-20130614|38126_1   9 DDP--DSVLLKLQEQEPNLQatLVRGSPPFFVEVLHHDVCKGNGLKLLCQHLDIPLDSVIAFGDGDNDVEFLQFSGMGIAMKNARPRTLAVADRITE 103
                  333..333333444433333337888999******************************************************************97 PP

>> PF05116.8  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   4.7e-11   2.1e-07     153     215 ..      34      96 ..       5     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4.7e-11
                  ---EEEEEETT-----HHHHHHHHHT--GGGEEEE---------TTSS-B--B-TT--HHHHH CS
    PF05116.8 153 sgkdlDilPkraskgeAlryLakklelelenilvcGdsgnDeellignvrgVvVgnaqeellq 215
                     ++ +l ++  kg+ l+ L+++l+++l++++  Gd  nD e l+ + +g+ ++na++  l+
  MMETSP0890-20130614|38126_1  34 PPFFVEVLHHDVCKGNGLKLLCQHLDIPLDSVIAFGDGDNDVEFLQFSGMGIAMKNARPRTLA 96 
                  445899****************************************************99776 PP

>> PF12710.2  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.066     162     191 .]      52      79 ..       4      79 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
                  HHHHH---T.T----S--EE---GGGHHHHH CS
    PF12710.2 162 erlvvlayk.qvggrivvaiGDsanDlpalk 191
                  + l    +  ++  + v+a+GD+ nD+++l+
  MMETSP0890-20130614|38126_1  52 KLL---CQHlDIPLDSVIAFGDGDNDVEFLQ 79 
                  333...3333677888************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      149  (0.0108982); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:01.08
# Mc/sec: 232.98
//
Query:       MMETSP0890-20130614|38139_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       317  (0.0231861); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:01.43
# Mc/sec: 405.54
//
Query:       MMETSP0890-20130614|38137_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-13   49.6   0.0    5.4e-13   48.9   0.0    1.4  1  PF01712.14 Deoxynucleoside kinase
    1.4e-11   44.0   0.0    2.3e-11   43.3   0.0    1.4  1  PF02223.12 Thymidylate kinase
    7.2e-08   32.6   0.0    4.8e-07   30.0   0.0    2.2  1  PF13238.1  AAA domain
    0.00018   21.2   0.0     0.0029   17.3   0.0    2.4  1  PF13671.1  AAA domain
    0.00067   20.3   0.2     0.0041   17.7   0.2    2.5  1  PF13207.1  AAA domain
     0.0011   17.9   0.0     0.0016   17.3   0.0    1.5  1  PF07693.9  KAP family P-loop domain
     0.0013   18.9   0.0      0.004   17.4   0.0    1.9  2  PF13191.1  AAA ATPase domain
     0.0017   17.3   0.0     0.0025   16.7   0.0    1.3  1  PF13175.1  AAA ATPase domain
     0.0024   16.7   0.0     0.0049   15.6   0.0    1.5  1  PF00437.15 Type II/IV secretion system protein
     0.0044   16.4   0.3      0.012   15.0   0.0    1.9  2  PF13555.1  P-loop containing region of AAA domain
     0.0052   16.7   0.1      0.042   13.8   0.0    2.2  2  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.2   0.2      0.028   13.8   0.0    1.7  2  PF13604.1  AAA domain
      0.011   14.7   0.0       0.44    9.5   0.0    2.2  2  PF00693.13 Thymidine kinase from herpesvirus
      0.013   15.0   0.0      0.029   13.9   0.0    1.5  1  PF02367.12 Uncharacterised P-loop hydrolase UPF0079
      0.018   14.6   0.0        0.2   11.2   0.0    2.3  2  PF13245.1  Part of AAA domain
      0.022   14.6   0.0      0.036   13.8   0.0    1.4  1  PF13521.1  AAA domain
      0.037   13.3   0.1       0.29   10.4   0.0    2.2  2  PF01121.15 Dephospho-CoA kinase
       0.06   12.6   0.1       0.23   10.7   0.0    1.9  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
      0.071   12.5   0.5        1.2    8.5   0.1    2.5  3  PF05729.7  NACHT domain


Domain annotation for each model (and alignments):
>> PF01712.14  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   7.5e-16   5.4e-13       1     128 [.      65     190 ..      65     206 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 7.5e-16
                  HHHHHHHHHHHHHHC...SSSS-EEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHSHH.----EEEE--HHHHHHHHHHS--CCC----HHHHHHHHHHHHTS--S--SSCCGGGS--EE CS
   PF01712.14   1 lqtyilnsrfkqqle...aarkevvvleRsiysdryifaknladkgtlddeelktYkellenmleqldkspdlliYLkvsletcleRikkRgreeEknieldYlesLheekyekwleklnaspvlvidgdk 128
                  +q+++l +r++++l     ++  + ++eR+++  +  fa     ++  +++ ++  ++ +  + e  ++   l i+ ++++e cl+Rik Rgr  E  i+l+Yl +L +  +  +l + + + v++idg++
  MMETSP0890-20130614|38137_1  65 FQMFVLSTRTASILRqlnEKSPTILISERTLFFGERAFADI-CIENAEEKKMYQACSSAYGSLIEAKAT--MLYIFVDTDPEICLSRIKARGRASESSIDLEYLHKLDS-SH-RRLVAEKGERVIKIDGNQ 190
                  8**********9999866667778999***99999999999.444444555555556666666666666..6************************************4.44.444445556677777665 PP

>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.1e-14   2.3e-11       1     184 [.      11     197 ..      11     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 3.1e-14
                  EE--TT---HHHHHHHHHHHHHSEE-EEEESS-TTS----HHHHHHHTCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-CT.HHHHHHHT.-TT--HHHHHHHGGGHH-B.....E-SEEEEEESSHHHHHTHHHTTT-TT.SHHHHHHHHHHHHHHHHHHHH.CTTTEEEEETTT-HHHHHH CS
   PF02223.12   1 iEGlDGaGKttqaellkeklkeqgikvvltrepggteiGelirelllkeeeleelteallfaadriehleekikpalkqgktvivdRylf.SslaYqga.kegvdldlvlslnedvlld.....kPdltflldvdpevalkRlrkrgeldeeeeeqldflrkvrekylelak.ekeriliidasksieevhe 184
                  +EG  G+GKtt+ ++l e++ +  + v ++ ep ++  +  + ++l  + ++++ ++ ++ +  r+ ++ + + +  k+  ++i++R lf +  a++ +  e+ + + +++ ++++ ++     +  l +++d+dpe++l R+++rg  ++e   +l++l+k+     +l++ + er++ id ++ +  v +
  MMETSP0890-20130614|38137_1  11 VEGNIGSGKTTVLKALEEAMIDDSR-VAFSEEPAESWEASGALSALY-SGKVSPSFFQMFVLSTRTASILRQLNE--KSPTILISERTLFfGERAFADIcIENAEEKKMYQACSSAYGSlieakATMLYIFVDTDPEICLSRIKARGR-ASESSIDLEYLHKLDSSHRRLVAeKGERVIKIDGNQDKSTVLA 197
                  68999*******************6.9******************99.*****************9999988888..7788******97527789998877778889999999999888775555567899*****************.8999999999*****9999***9999********999887765 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   6.7e-10   4.8e-07       2     117 ..      10     157 ..       9     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 6.7e-10
    PF13238.1   2 litGtpGvGKtTlakeLaerlgdvlrdlakengleeevddk............idtkeskeldedkldelldkleenes..elaegenviidghlaeleledlkdlkl............................vvLradpeelarRlekRgrkee 117
                   + G  G+GKtT++k+L+e   +  + +a++++  e+++                + +  +l ++          + +    ++++ +++i  +   +  +++ d+ +                            +++++dpe+++ R+++Rgr +e
  MMETSP0890-20130614|38137_1  10 SVEGNIGSGKTTVLKALEEA-MIDDSRVAFSEEPAESWEASgalsalysgkvsPSFFQMFVLSTRT---------ASILrqLNEKSPTILISERTLFFGERAFADICIenaeekkmyqacssaygslieakatmlyIFVDTDPEICLSRIKARGRASE 157
                  689****************9.688888888888888888888885554444333333334444444.........33334223334455666666666566555555588888888888889999999999999********************8765 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.1e-06    0.0029       1     128 [.       8     162 ..       8     176 .. 0.54

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.1e-06
    PF13671.1   1 lvllvGlpGsGKstlaerllkklg....yvrlsqdt.......lrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsviv..dat..............nlsreer....arfvklakrlgvp...........vrivylevpeetlreRlakRerngddrsev 128
                  lv + G  GsGK+t++++l ++        +  +++       + ++l+ +++ s+++ +   + l  +++ ++r  l ++ ++i+   +t              n++++++    +                          +++++++e + +R+++R+r++++++++
  MMETSP0890-20130614|38137_1   8 LVSVEGNIGSGKTTVLKALEEAMIddsrVAFSEEPAesweasgALSALY-SGKVSPSFFQM--FVLSTRTASILR-QLNEKSPTILisERTlffgerafadicieNAEEKKMyqacS-----------SaygslieakatMLYIFVDTDPEICLSRIKARGRASESSIDL 162
                  56778999********999654434222444444444444333333333.33444443222..223333334443.34455555554556644333344444333333333333332...........023333444444999*******************99988764 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   5.7e-06    0.0041       2      22 ..       9      29 ..       8     274 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.7e-06
                 E--B--TT---HHHHHHHHHH CS
    PF13207.1  2 iaitGppGsGKsTlakeLaer 22
                 + + G  GsGK+T+ k+L+e+
  MMETSP0890-20130614|38137_1  9 VSVEGNIGSGKTTVLKALEEA 29
                 6799**************997 PP

>> PF07693.9  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.3e-06    0.0016      17      48 ..       3      90 ..       1     272 [. 0.66

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.3e-06
    PF07693.9 17 latpiviglyGkWGsGKssllnlledelkef........................................................k 48
                 +++ i + ++G+ GsGK+++l+ le+++ ++                                                         
  MMETSP0890-20130614|38137_1  3 SEKTILVSVEGNIGSGKTTVLKALEEAMIDDsrvafseepaesweasgalsalysgkvspsffqmfvlstrtasilrqlneksptilI 90
                 467899*************************777777777777777777777777777777777777777777777777666666663 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.6e-06     0.004      25      90 ..       8      89 ..       2     209 .. 0.66
   2 ?   -1.4   0.0       3.4   2.4e+03      36      62 ..     192     213 ..     173     249 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.6e-06
    PF13191.1 25 lllvtGpsGiGKSsLlrelakpille.rlrfaagkfdqllrn...............lpysaiiqalrellrqlltelaael 90
                 l+ v G+ G+GK+++l++l ++++++ r++f ++     +++                ++ ++  +  ++lrql  ++ + l
  MMETSP0890-20130614|38137_1  8 LVSVEGNIGSGKTTVLKALEEAMIDDsRVAFSEEPAESWEASgalsalysgkvspsfFQMFVLSTRTASILRQLNEKSPTIL 89
                 68899*************8888887777777777777777776666555555554443333333335555555444444444 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3.4
    PF13191.1  36 KSsLlrelakpillerlrfaagkfdql 62 
                  KS++l +     +l+  + +ag+++  
  MMETSP0890-20130614|38137_1 192 KSTVLAQ-----VLALIQSLAGGINKE 213
                  7777777.....444444444444444 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.5e-06    0.0025      25     223 ..       9     264 ..       1     285 [. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.5e-06
    PF13175.1  25 nviiGeNgsGKttILeal.eklknrknmlfikk.........................................nlklkieglfkllvkekkkikisesdnkadidky......niekkskkikisssieessneiksklinfyldkvkyylevvnedvedkielllfekllekalklllekiekldeikgisk.....................ksieiseniegiekintythfeniknkvgelsiieykildaykekkerkiike 223
                   +  G++gsGKtt+L+al e +   +++ f  +                                         +++  i  ++  l +++  + ++  +n ++++ y      + + ++ k +   ++ + + ei               +++ ++  e++i+l+   kl  + ++l +ek e+  +i g+++                       i+ s +  + ++  + t++e + +++  +++++++ +d++ + ++r+ +k+
  MMETSP0890-20130614|38137_1   9 VSVEGNIGSGKTTVLKALeEAMIDDSRVAFSEEpaesweasgalsalysgkvspsffqmfvlstrtasilrqlnEKSPTILISERTLFFGERAFADICIENAEEKKMYqacssaYGSLIEAKATMLYIFVDTDPEICLS-----------RIKARGRASESSIDLEYLHKLDSSHRRLVAEKGERVIKIDGNQDkstvlaqvlaliqslagginkENIDPSTTKKTNRNLAVVTPNEVKGSESSASTTKQHIHIDEM-STPQRDHTKK 264
                  4789**************87788888888888899999999******99999999999999999999999999888888888888888888888888888888888888998887777777777777777777777777...........35678888998888888888888889999999999999999888555555555555555555544333333333333444444444444444445566666666666.3333333333 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.8e-06    0.0049     128     168 ..       4      45 ..       1      64 [. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.8e-06
   PF00437.15 128 rgnilvs..GgTgsGKttllnallaeinkdderivtiEDpvEl 168
                  +++ilvs  G  gsGKtt+l+al + + +d  r+   E p+E 
  MMETSP0890-20130614|38137_1   4 EKTILVSveGNIGSGKTTVLKALEEAMIDD-SRVAFSEEPAES 45 
                  566776555*************99999888.9*******9995 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.012      28      56 ..      11      39 ..       2      45 .. 0.85
   2 ?   -3.2   0.1       7.8   5.6e+03      36      47 ..     192     202 ..     192     206 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.6e-05
    PF13555.1 28 ltGasGsGKSTllDAiqtlLvpakkvafN 56
                 + G+ GsGK+T+l A+   ++ +++vaf 
  MMETSP0890-20130614|38137_1 11 VEGNIGSGKTTVLKALEEAMIDDSRVAFS 39
                 66*******************99999996 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7.8
    PF13555.1  36 KSTllDAiqtlL 47 
                  KST+l A++  L
  MMETSP0890-20130614|38137_1 192 KSTVL-AQVLAL 202
                  99999.554444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.9e-05     0.042       7      69 ..       9      71 ..       3     111 .. 0.75
   2 ?    0.7   0.0      0.67   4.8e+02      44      84 ..     187     204 ..     110     256 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.9e-05
    PF13401.1  7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapast.spkellqkllsalglpakg.....r 69
                 + v G+ G+GKTt+l+ l +          ++rv+f e pa++ ++++ l++l s   +p        +
  MMETSP0890-20130614|38137_1  9 VSVEGNIGSGKTTVLKALEEAMID------DSRVAFSEEPAESwEASGALSALYSGKVSPSFFqmfvlS 71
                 5689***************96422......999999998888878888888888776666666544443 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.67
    PF13401.1  44 eapastspkellqkllsalglpakgrltteellealqealr 84 
                  +                        +++++++l++++  ++
  MMETSP0890-20130614|38137_1 187 DG-----------------------NQDKSTVLAQVLALIQ 204
                  22.......................3333333333333222 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.9e-05     0.028      16      44 ..       4      32 ..       1      54 [. 0.86
   2 ?   -1.8   0.0       2.4   1.7e+03      80      80 ..     227     227 ..     172     266 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.9e-05
    PF13604.1 16 sgdrvavvqGpAGtGKttvlkalrealea 44
                 ++ +++ v+G  G+GKttvlkal+ea+ +
  MMETSP0890-20130614|38137_1  4 EKTILVSVEGNIGSGKTTVLKALEEAMID 32
                 5678899******************9865 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.4
    PF13604.1  80 l 80 
                  l
  MMETSP0890-20130614|38137_1 227 L 227
                  1 PP

>> PF00693.13  Thymidine kinase from herpesvirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00061      0.44       1      38 [.      13      50 ..      13      58 .. 0.89
   2 ?    2.9   0.0     0.065        47     155     189 ..     141     176 ..     128     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00061
                 -------HHHHHTTHCCCTSTCCEEEE---HHHHHTSS CS
   PF00693.13  1 GayGiGKtttaralaaaseargpvlyvpEPmayWrtlf 38
                 G  G GKtt+++al +a+ + ++v + +EP + W    
  MMETSP0890-20130614|38137_1 13 GNIGSGKTTVLKALEEAMIDDSRVAFSEEPAESWEASG 50
                 77899*************99999***********8765 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.065
                  -HHHHHHHHHHTS----.---HHHHHHHHHHHHHHH CS
   PF00693.13 155 dekehlrRlaaRaRpGe.rvdlkllaalrnvYalLv 189
                  d++  l+R++aR R+ e  +dl++l+ l  +   Lv
  MMETSP0890-20130614|38137_1 141 DPEICLSRIKARGRASEsSIDLEYLHKLDSSHRRLV 176
                  5566689********99459******9998887776 PP

>> PF02367.12  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     4e-05     0.029      14      43 ..       5      34 ..       2      39 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4e-05
   PF02367.12 14 agdvvlLsGdlGaGKTtlvkglakglgvkg 43
                 +  +v  +G++G+GKTt +k+l +++  ++
  MMETSP0890-20130614|38137_1  5 KTILVSVEGNIGSGKTTVLKALEEAMIDDS 34
                 5678999****************9995444 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00028       0.2      13      35 ..       9      30 ..       5      56 .. 0.79
   2 ?    0.6   0.0      0.57   4.1e+02      23      62 ..     192     244 ..     177     263 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00028
    PF13245.1 13 lvvtGgPGtGKTttlaaiiaall 35
                 + v G  G+GKT t++++  ++ 
  MMETSP0890-20130614|38137_1  9 VSVEGNIGSGKT-TVLKALEEAM 30
                 6679********.7777776665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.57
    PF13245.1  23 KTttlaaiiaall...............aarekp.grsvllvaptgraakrlserl 62 
                  K+t+la  + al+               ++  k+ +r   +v+p+     + s+++
  MMETSP0890-20130614|38137_1 192 KSTVLA-QVLALIqslagginkenidpsTT--KKtNRNLAVVTPNEVKGSESSAST 244
                  663333.33333336668877777777532..344677888888877766666665 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.1e-05     0.036       5     155 ..      12     186 ..       8     192 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.1e-05
    PF13521.1   5 tGgpstGKTtlleaLaar.....gypvvpEvarevleekl...akgeealpweedllafaeavleaqleqeaaa...aaskllfcDrgll.dtlaYarllggdaeke.lee........aarekrydlvfllppepei..eqDgeR......redeeeaeaiderlrealeelgipviev 155
                   G  ++GKTt+l+aL++       +   +E+a  +  +++    + ++ +p+ ++       vl+++ +   ++   +++ +l+++r l+  + a+a+ + ++ae++ + +         +++k   l+++++++pei  ++ ++R        d+e+  ++d  +r ++ e g +vi++
  MMETSP0890-20130614|38137_1  12 EGNIGSGKTTVLKALEEAmiddsRVAFSEEPAESWEASGAlsaLYSGKVSPSFFQ-----MFVLSTRTASILRQlneKSPTILISERTLFfGERAFADICIENAEEKkMYQacssaygsLIEAKATMLYIFVDTDPEIclSRIKARgrasesSIDLEYLHKLDSSHRRLVAEKGERVIKI 186
                  57779***********877885344444777777766666553223333333233.....333333333222222224455555555443134444444444322222222122233437778888889999999976553333332233223455556666666666666666666655 PP

>> PF01121.15  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0004      0.29       2      24 ..       8      30 ..       7      39 .. 0.83
   2 ?   -0.2   0.0      0.68   4.9e+02     125     169 ..     134     178 ..     125     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0004
                 EEEEB-------HHHHHHHHH-- CS
   PF01121.15  2 vvgltGgigsGKstvanlfadlg 24
                 +v++ G+igsGK+tv +++++  
  MMETSP0890-20130614|38137_1  8 LVSVEGNIGSGKTTVLKALEEAM 30
                 68999**********99988754 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.68
                  CEEEEE--HHHHHHHHHHCHTSTHHHHHHHHHHS--HHHHHHH-S CS
   PF01121.15 125 rvlvvdvdlelqveRlverdglseeevkaiiaaQaseeerlalad 169
                    + vd d+e  + R+ +r   se  +     + +++++r+ +a+
  MMETSP0890-20130614|38137_1 134 LYIFVDTDPEICLSRIKARGRASESSIDLEYLHKLDSSHRRLVAE 178
                  457899999999999999999999999988888888888888875 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00032      0.23       3      30 ..       9      36 ..       7      40 .. 0.78
   2 ?   -1.7   0.0       2.1   1.5e+03      24      65 ..     221     262 ..     214     272 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00032
                 EEEE-------HHHHHHHHCHS---S-E CS
   PF02492.14  3 tvltGflGsGKTtLleklleknreglki 30
                 + + G +GsGKTt+l++l e+  ++ ++
  MMETSP0890-20130614|38137_1  9 VSVEGNIGSGKTTVLKALEEAMIDDSRV 36
                 56889**********9987755555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.1
                  S---S-EEEEE.S-----HCCCCCHHT-S-.EEEE----ECC- CS
   PF02492.14  24 nreglkiaViv.ndfgetkiDaellretgveivelnnGciCct 65 
                  ++ ++++aV++ n+++  ++ ++  +++   i e+++ +  +t
  MMETSP0890-20130614|38137_1 221 KKTNRNLAVVTpNEVK-GSESSASTTKQHIHIDEMSTPQRDHT 262
                  5567888888767777.44444444444466888877666666 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0017       1.2       3      22 ..       9      28 ..       7      36 .. 0.86
   2 ?   -2.4   0.0       3.9   2.8e+03     104     141 ..      46      83 ..      31      91 .. 0.60
   3 ?    1.7   0.0      0.22   1.6e+02     120     159 ..     222     262 ..     166     270 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0017
    PF05729.7  3 vilqGeaGsGKTtLlqklas 22
                 v ++G  GsGKTt l+ l +
  MMETSP0890-20130614|38137_1  9 VSVEGNIGSGKTTVLKALEE 28
                 789************98865 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.9
    PF05729.7 104 qpvrtlLselirkkllpeasllltvrpdalrdleeqle 141
                   ++   Ls l ++k+ p+   +  +++++ + l+++ e
  MMETSP0890-20130614|38137_1  46 WEASGALSALYSGKVSPSFFQMFVLSTRTASILRQLNE 83 
                  55566677777777766666555555555544555444 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.22
    PF05729.7 120 peasllltvrpdalrdleeqleea.ivlevegfseerrkql 159
                  ++++ l+ v+p++++  e++ +++ +++++ ++s ++r++ 
  MMETSP0890-20130614|38137_1 222 KTNRNLAVVTPNEVKGSESSASTTkQHIHIDEMSTPQRDHT 262
                  566778889999998888888888899*******9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.86
# Mc/sec: 796.93
//
Query:       MMETSP0890-20130614|38144_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   13.1   1.0        0.3   11.0   0.2    2.2  2  PF03980.9 Nnf1
       0.15   11.3   1.7       0.19   11.0   1.2    1.1  1  PF10123.4 Mu-like prophage I protein
       0.17   10.3   3.0       0.23    9.9   2.1    1.1  1  PF10428.4 RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> PF03980.9  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.16   7.1e+02      85     107 ..       3      25 ..       1      53 [. 0.72
   2 ?   11.0   0.2   6.5e-05       0.3      31      66 ..      69      95 ..      65     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.16
    PF03980.9  85 eeLnarlqklqaeNaeladeiqe 107
                  e+L+ ++qk ++  +++a +i+e
  MMETSP0890-20130614|38144_1   3 EKLEDMVQKSAEAVQKMASAISE 25 
                  45555555555555555555554 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 6.5e-05
    PF03980.9 31 dveekLneLDelieeAkerkesnkeeaekpvaidsl 66
                 +++ +LneL++l e A++ k+++++         +l
  MMETSP0890-20130614|38144_1 69 ELRVRLNELERLEELAESAKRADRN---------KL 95
                 6899*************99984443.........33 PP

>> PF10123.4  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   4.2e-05      0.19     165     242 ..      10      87 ..       2     129 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.2e-05
    PF10123.4 165 aateeaalaalaeaalaalaalataaakldeqkeqlaalta.kkanevdlakyvpvetlqalkaelaaleaklaeaeve 242
                  ++++e a++++a+a +++++  +ta+ + ++ ke++a+ ++ ++ +++  ak ++ +++++l+ +l++le+ ++ ae +
  MMETSP0890-20130614|38144_1  10 QKSAE-AVQKMASAISERIEPGSTAKRSTESGKEKIAKGSTiNASSTPPSAKKIEPKNYEELRVRLNELERLEELAESA 87 
                  44555.7899****************************99953333566677777779999999999988877666653 PP

>> PF10428.4  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1     5e-05      0.23     159     284 ..       5     173 ..       2     182 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5e-05
    PF10428.4 159 aesaspsssearntttskllrerkrtptaerspsssprslsnesalessrs............................vvsnlqvttdvpip.........................ssngtsrsstqsssakssaissgatprsgesfrslptsstssvn...agssldeaeedrideql 284
                  +e+ +++s ea+++ +s+++++ ++++ta+rs++s ++ ++++s+++ s +                                                                    ++ + ++s q+ s++ s    g  +r+g  +r  p+ ++ +vn     + +++ +ed+ d++l
  MMETSP0890-20130614|38144_1   5 LEDMVQKSAEAVQKMASAISERIEPGSTAKRSTESGKEKIAKGSTINASSTppsakkiepknyeelrvrlnelerleelA------------EsakradrnklsakqwkrgfftekkrKKQVSFQPSPQT-SKAFSSCVGGIKERRGPVMRGPPQVNNERVNgalFDIDTRQSTEDDCDDNL 173
                  567788999*************************************9996555555555555555555555555544441............04444444455556666666655554333333344344.466777778899999999999999999999987766778888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       984  (0.0719719); expected 273.4 (0.02)
Passed bias filter:                      607  (0.0443973); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.71
# Mc/sec: 715.53
//
Query:       MMETSP0890-20130614|38173_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00047   19.2   0.0    0.00047   19.2   0.0    1.1  1  PF00069.20 Protein kinase domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.4e-08   0.00047     149     177 ..      17      45 ..       5      47 .] 0.86

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.4e-08
                  CEESS-CSS----GGGS-HHHHHTSHHHH CS
   PF00069.20 149 eksseklttlvgtreYmAPEvllkakeyt 177
                  + + ++lt +v+tr+Y+APE+ll+++ y+
  MMETSP0890-20130614|38173_1  17 NVDTNNLTGYVVTRWYRAPELLLTCEPYS 45 
                  5667899****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.65
# Mc/sec: 173.28
//
Query:       MMETSP0890-20130614|38171_1  [L=1051]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00067   19.7   0.0     0.0018   18.4   0.0    1.8  1  PF01909.18 Nucleotidyltransferase domain
  ------ inclusion threshold ------
      0.085   12.7   0.0       0.27   11.0   0.0    2.0  1  PF03828.14 Cid1 family poly A polymerase
        1.3    9.3   9.3        8.2    6.7   2.1    2.9  2  PF02176.13 TRAF-type zinc finger


Domain annotation for each model (and alignments):
>> PF01909.18  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.9e-07    0.0018      13      39 ..     544     571 ..     532     657 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.9e-07
                  T.TSEEEEE-ETTTT---TT-EEEEEEE CS
   PF01909.18  13 g.vakvvlfGSyarGtllpgSDiDllvv 39 
                     + v lfGS+a G+  ++SD+Dl+v 
  MMETSP0890-20130614|38171_1 544 CaPVTVELFGSCAYGLDSENSDLDLVVR 571
                  34889*********************95 PP

>> PF03828.14  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.9e-05      0.27      10      60 .]     853     916 ..     844     916 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.9e-05
                  HHH--------SEEB-------EEGGG-GGG-.............S-.S-SSS--BB----TTS CS
   PF03828.14  10 FeyYgseFdyenvvisirtggilskkekgwes.............nkernrfllaIeDPfeldn 60 
                    ++g  F  ++++ s+r gg++   + g++              ++ + ++++ IeDP++++n
  MMETSP0890-20130614|38171_1 853 VLLFGCDFTPQKEGFSVRHGGRRLVIDNGHRLviaphlrpaqskaHRLKLDHNFLIEDPLDPTN 916
                  5579999************999888888888889********99988899************98 PP

>> PF02176.13  TRAF-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.1    0.0018       8.2       9      31 ..     290     314 ..     287     322 .. 0.57
   2 ?    5.1   0.3    0.0058        26       4      35 ..     363     389 ..     348     400 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0018
                  --B-TT--..S-B.--SSSSTTTTT CS
   PF02176.13   9 pvpCpnqc..ckkkilRedledHle 31 
                  ++ Cp+ c  c +  +R  l +Hl+
  MMETSP0890-20130614|38171_1 290 ELVCPYACfgCTHVCPRSRLTEHLA 314
                  4455555555555566666666666 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0058
                  ----S--B-TT--S-B.--SSSSTTTTTTS-T CS
   PF02176.13   4 tCpfapvpCpnqcckkkilRedledHleedCp 35 
                  +Cp a++ C    c++     +l+ Hl+ +Cp
  MMETSP0890-20130614|38171_1 363 VCPNAVMGCRV-VCRR---GVELQRHLD-ACP 389
                  36666666633.3333...245666666.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       953  (0.0697045); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.48u 0.39s 00:00:01.87 Elapsed: 00:00:02.08
# Mc/sec: 1210.85
//
Query:       MMETSP0890-20130614|38189_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-06   26.0   0.2    1.6e-05   24.4   0.1    1.9  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.17   2.3e+03      14      26 ..     100     112 ..      97     113 .. 0.78
   2 !   24.4   0.1   1.2e-09   1.6e-05       3      39 .]     112     150 ..     110     150 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.17
                  EEEEEEESSSTEE CS
   PF00400.27  14 Vtcvafspdgpll 26 
                  V++++f p +++l
  MMETSP0890-20130614|38189_1 100 VSALRFTPWSSRL 112
                  8999999987665 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1.2e-09
                  EEEEEESSSSSEEEEEEESS..STEEEEEETTSEEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspd..gpllasgSrDgtirlWd 39 
                  +++++rgH+++V  v    +  g +l s+++D+t+r+W+
  MMETSP0890-20130614|38189_1 112 LLRVYRGHEGSVLGVTALRTsdGIRLTSCGEDHTVRIWS 150
                  689***********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:00.68
# Mc/sec: 535.66
//
Query:       MMETSP0890-20130614|38198_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.1   0.0    1.6e-22   79.5   0.0    1.2  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   1.2e-26   1.6e-22      10     188 ..       1     184 [.       1     186 [. 0.89

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 1.2e-26
                  EEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHH......HHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBTTHCTSEEEE CS
   PF00227.21  10 ikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisve......rlvkrlaallqaytqrsgrrpfgvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdklsgknveva 188
                  ++gk +v +++d+r+  g+ ++ +    ++ +  d  ++a+ Gl+aD++tl e + ++++l+ ++ g   +          +++++++++ +   s +++++++ +iagv ++g+ +l+  dp G+ ++ k++v+ G+++++  +++e+ly++dl+ + ++++ ++++++ l+rd+lsg +v v+
  MMETSP0890-20130614|38198_1   1 MAGKSCVAVVVDTRLGVGNAVIGDV-GCRVLECGDSSMLALRGLQADVETLLEEVDARLRLRWIQDGGIGPGPrsfiqpDKLSAMVSIMLYNSRLSTQGHYFLEPIIAGVKRNGEAYLCAQDPLGAQLRSKSYVVAGTAAHSLHGACEALYEPDLEPDALLDISLRCMTAGLNRDCLSGRKVAVY 184
                  579******************9888.59*************************************995444332231111455566666666666689***********************************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.38s 00:00:00.86 Elapsed: 00:00:00.63
# Mc/sec: 775.96
//
Query:       MMETSP0890-20130614|38208_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.42s 00:00:00.88 Elapsed: 00:00:01.20
# Mc/sec: 405.38
//
Query:       MMETSP0890-20130614|38206_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-63  213.9   0.0    3.2e-63  213.3   0.0    1.3  1  PF00425.13 chorismate binding enzyme
    9.4e-38  129.4   0.0    1.4e-37  128.8   0.0    1.3  1  PF00117.23 Glutamine amidotransferase class-I
    6.4e-15   55.0   0.0    1.3e-14   54.0   0.0    1.5  1  PF07722.8  Peptidase C26
    1.9e-11   44.0   0.0    1.3e-09   38.1   0.0    3.4  2  PF04715.8  Anthranilate synthase component I, N terminal region
  ------ inclusion threshold ------
      0.072   12.9   0.0       0.27   11.1   0.0    2.0  2  PF00072.19 Response regulator receiver domain
       0.19   11.5   2.6          1    9.1   0.3    2.8  3  PF13296.1  Putative type VI secretion system Rhs element Vgr


Domain annotation for each model (and alignments):
>> PF00425.13  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.3   0.0   1.4e-66   3.2e-63       3     257 .]     293     554 ..     291     554 .. 0.97

  Alignments for each domain:
  == domain 1    score: 213.3 bits;  conditional E-value: 1.4e-66
   PF00425.13   3 eeYaeavekakeairagdlykvvlsrrleaeleaavdplalyerlrknnpapysfllele...ellgaSPElllsveggg.....rrveteplaGTrprgktpeedealaeelledeKeraEhlmvvdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkrameiIdelEeedRgvYaGavgyldadgeadlavaIRtavvkdkelslgaGaGIvadSdpeaEyeEtlaK 257
                   e+a+ ve+ak +++ g+l++vvls++++ +l+ + +p al+++lr++np+py fl++l+    l+gaSPE+ ++ve+++      rvet p+ GT++rg+++ ed+++ + ll+++K+ +E  m++d  rnd ++v++pgsv v   +++e ys+++h+v ++eg l+++ ++ld++    ++ +vtGaPk  a ++I+  E+++R++Y+Gavg +++dg++++ +++Rt+ v+++ + ++aGa    dS+p aE +Et++K
  MMETSP0890-20130614|38206_1 293 GEFAALVERAKLQFACGNLFEVVLSQQWREPLA-NAKPSALFRELRQRNPSPYGFLMNLGqdeYLVGASPEMYVRVERSDpssqkLRVETCPISGTIARGADALEDANQVRLLLASAKDESELTMCTDVDRNDKSRVCEPGSVAVLGRRQIEMYSKLIHTVDHVEGYLRSGFDALDAFLCHAWAVTVTGAPKVWAARFIEANERSPRNWYGGAVGHVGFDGSMNTGLTLRTIHVQNGYAAIRAGATLLYDSEPMAEEAETELK 554
                  5899***************************66.679********************77777789*********998666888889******************************************************************************************************************************************************99**********************998 PP

>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   6.3e-41   1.4e-37       1     189 [.     596     784 ..     596     787 .. 0.89

  Alignments for each domain:
  == domain 1    score: 128.8 bits;  conditional E-value: 6.3e-41
                  EEEE-S-SSHHHHHHHHHHTT-EEEEEETTGGHHHHHH.TTT--SEEEEE----TTTT-CCHHHHHHHHGTTTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTT....SCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSSBEEESSBTTCTTS..-GGGHHHHHHH CS
   PF00117.23   1 lliDnydsvtknleralrelgvkvevvpndadaeeile.klsnpdgilisgGpgspgevegkieaikearenkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgk....aallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknpivgvQFHPEssst..pggpellfnfl 189
                  lliD +ds+++ l+++lr+ g++v v +  +   ++ +  +++ d  ++s+Gpg p +  +  ++i+ a+e++iP++G+CLG+Q +++ +gg++      + +g+   +++ ++      +l+glpn+++v+++Hs+ +++   +p++l+vta ++d++ +ma+ +k+ p+ +vQFHPEs++t   +g ++l+n+l
  MMETSP0890-20130614|38206_1 596 LLIDHEDSFVHTLANYLRQTGAQVRVCRFGTA-AIT-AlTNEHWDLAVLSPGPGRPID-FNLSSTISLALERRIPLFGVCLGLQGMVEYYGGRLGTLA-APVHGKPASVKQLEShlseNTILDGLPNTFEVARYHSLFADD---VPHELIVTAVTSDDDCVMALQHKSLPLAAVQFHPESILTspRHGLRILANCL 784
                  58**************************9863.333.335899*************98.6888999999999********************999888.78999988888877788889*********************9...************************************9883347777777775 PP

>> PF07722.8  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   5.7e-18   1.3e-14      99     217 .]     658     767 ..     651     767 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 5.7e-18
                  HHHH------BB------HHHHHHH------EEE.............EEEEEEE--ET-STTTTS-HHHS--EEEEEEEE-BHHHHH-EEEEEEE.----EEEEEEE--S-B----S-TT CS
    PF07722.8  99 iraalergvPvlgiCrGlqllnvalggtlyqdikeepglsdhreheqdasshavslekgsllarllgaeeievnslHhqaikelakglevlAtae.dgvieaieseeakyfvlgvQWHPE 217
                  i+ aler++P++g+C+Glq +   +gg+l + +        h ++  + ++ + +l ++++l  l++  ++ev+ +H    +++ ++l v+A+ + d+ + a+++++   ++ +vQ+HPE
  MMETSP0890-20130614|38206_1 658 ISLALERRIPLFGVCLGLQGMVEYYGGRLGTLAAP-----VHGKP-ASVKQLESHLSENTILDGLPN--TFEVARYHSLFADDVPHELIVTAVTSdDDCVMALQHKS--LPLAAVQFHPE 767
                  56799************************999884.....34333.578899**************9..9***********************998999***99999..67********9 PP

>> PF04715.8  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   5.6e-13   1.3e-09       6     139 ..      62     236 ..      57     237 .. 0.81
   2 ?    1.8   0.0     0.085   1.9e+02      64     100 ..     462     512 ..     327     542 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 5.6e-13
    PF04715.8   6 lelylrlagegysflLeSae..gge.grysfigadplatlkakdgeisleg.............................................degekleeeepldaLrellarlrategslpeelpFtgGavGylgYDlveelepklps.kddlselPdaefllydtllvfDhqeqkly 139
                   +l  +l +++  +lL S++   ++ +r+ +  a+p ++l  + ++ +                                                 e+e+++e++ l++ r ++++l ++++        + G++G +gYDl+ ++ep +    +++++  d++++l+d +lv+D++e++++
  MMETSP0890-20130614|38206_1  62 EALIDALDERE-GVLLASSYevPNRyARWTVGFASPPLVLSGTARNFEFRAlnargqlmldmftptlqacdavatlekknanillgtvampsnvvrAEEERSKEPSLLSIVRTCVETLYHPDD-------AQLGLYGAFGYDLMFQFEPLIAPvLKRNPKQRDLVLFLPDEILVVDQRENTAW 236
                  56677777766.999999987655589*********999665555555555556666666777777777777777777888888899********99999999999*************6654.......89***********999**9888896666669******************9988 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.085
    PF04715.8  64 pldaLrellarlrategsl.............peelp.FtgGavGylgYDl 100
                   +daL+++l  ++a++++              +  ++  +gGavG +g+D 
  MMETSP0890-20130614|38206_1 462 GFDALDAFLCHAWAVTVTGapkvwaarfieanERSPRnWYGGAVGHVGFDG 512
                  677777777766666555566666666666643333368899999999996 PP

>> PF00072.19  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.1   9.4e+03      50      69 ..     121     140 ..     118     154 .. 0.50
   2 ?   11.1   0.0   0.00012      0.27       1      49 [.     595     642 ..     595     646 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.1
                  ESS-TT----HHHHHHHHHT CS
   PF00072.19  50 DiempgmdGlellkeireee 69 
                  D+  p++++ +++ ++++++
  MMETSP0890-20130614|38206_1 121 DMFTPTLQACDAVATLEKKN 140
                  55555555555555553333 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00012
                  EEEESSSHHHHHHHHHHHHHTTSEEEEEESSSHHHHHHHHHHHESEEEE CS
   PF00072.19   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlill 49 
                  vl++d e+++ + l+++l++ g  +v++++ g++a++ l +++ Dl +l
  MMETSP0890-20130614|38206_1 595 VLLIDHEDSFVHTLANYLRQTGA-QVRVCRFGTAAITALTNEHWDLAVL 642
                  89*********************.*********************9875 PP

>> PF13296.1  Putative type VI secretion system Rhs element Vgr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.1   9.3e+03      57      96 ..      31      69 ..      17      74 .. 0.67
   2 ?    0.7   0.0      0.19   4.2e+02      18      47 ..     398     427 ..     393     433 .. 0.83
   3 ?    9.1   0.3   0.00046         1      54     106 ..     517     573 ..     511     576 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.1
    PF13296.1 57 LrTdawgavRAgkGlllstearakasgeqldmeeavaqle 96
                 L Td+  a  +g G+  +  + +k+ +  +++e+ ++ l+
  MMETSP0890-20130614|38206_1 31 LPTDGTYATAGGVGVTRTVRSLSKS-EASVEVEALIDALD 69
                 7788888888888877766666544.55666666666665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.19
    PF13296.1  18 tgqeraqLasehaksqLnlGylvdqkdngr 47 
                  ++q r+ Las +++s+L++   vd +d++r
  MMETSP0890-20130614|38206_1 398 ANQVRLLLASAKDESELTMCTDVDRNDKSR 427
                  5799999***********999999887766 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00046
    PF13296.1  54 GfeLrT....dawgavRAgkGlllstearakasgeqldmeeavaqleqaeelaesls 106
                  G+ LrT    ++++a+RAg+ ll  +e+ a+++++ l+++++++ ++  ++  +++s
  MMETSP0890-20130614|38206_1 517 GLTLRTihvqNGYAAIRAGATLLYDSEPMAEEAETELKAAAMRETIRTVKANEQQIS 573
                  7777775555689***************99999888888887777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.27u 0.41s 00:00:01.68 Elapsed: 00:00:01.05
# Mc/sec: 1873.72
//
Query:       MMETSP0890-20130614|38216_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   69.9   0.0    6.9e-15   55.2   0.0    2.4  2  PF06094.7 AIG2-like family
     0.0035   17.2   0.0        3.7    7.6   0.0    2.3  2  PF13772.1 AIG2-like family


Domain annotation for each model (and alignments):
>> PF06094.7  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.1e-05      0.14      45     100 ..       7      63 ..       1      65 [. 0.74
   2 !   55.2   0.0     1e-18   6.9e-15       1     101 [.     214     324 ..     214     325 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
                  EES-TT---B---EEEE-HHHHHHHHHHTT.....TTTS-EEEEEEEEE----EEEEEEEE CS
    PF06094.7  45 lvegegaelVeGelyevtdeelarlDelEg.....egslYervevevllgdgeeveAwvYv 100
                  l ++eg  + +G +++++dee+ rlD++E+     + + Yer + e  +++    eA vY+
  MMETSP0890-20130614|38216_1   7 LCPCEGV-VTKGSIVRLSDEEKLRLDQFEDgyreiKLNVYERIQGEESVKR---HEASVYI 63 
                  5666665.789*****************99777777777777766655554...3778876 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 1e-18
                  EE-----STTSCCCHHHCTTEEEE-EEE-BSS..-EEEE----EEEEES-TT--.......-B---EEEE-HHH.HHHHHHHTTTTTS-EEEEEEEEE----EEEEEEEEE CS
    PF06094.7   1 vFvYGTLkrgevnhavlaakaaalrgeaatle..gllvlsgagypalvegegae.......lVeGelyevtdee.larlDelEgegslYervevevllgdgeeveAwvYvy 101
                  +FvYG+L+ g  nh++l  ++a+l+ e + ++  + + +s ++yp+ ++++++          +G+l++v+ +   ++lD lE ++  Y r +++v  +d+    Aw+Y+ 
  MMETSP0890-20130614|38216_1 214 IFVYGSLMTGLANHHILDGNKARLIRESVQTRdsNFYLISAGNYPFALSSSSSVvlkektsALRGQLFAVDTNVlESQLDPLESHPHFYLRSRCDVIQDDEDLGSAWIYLL 324
                  6*****************9999999999999999***************777667777777*********99997889**********************9999*****86 PP

>> PF13772.1  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00066       4.5       6      66 ..      19      90 ..      15      92 .. 0.70
   2 !    7.6   0.0   0.00054       3.7       4      53 ..     278     327 ..     275     340 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00066
    PF13772.1  6 LyeidlenlkdldkqEgvekgiYrpieveV....st.etgkevlaraYvlsnqeetp..........PsktYlkvl 66
                 + ++++e+  +ld+ E+     Yr+i+++V    +  e+ k ++a +Y+   +   +          Ps+ Yl  +
  MMETSP0890-20130614|38216_1 19 IVRLSDEEKLRLDQFED----GYREIKLNVyeriQGeESVKRHEASVYIAGTSAMNQqlftpkmnagPSEAYLTAI 90
                 55666666667777666....5999999997654224666779999999877633222466788899*****9876 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00054
    PF13772.1   4 GvLyeidlenl.kdldkqEgvekgiYrpieveVstetgkevlaraYvlsnq 53 
                  G L+ +d++ l ++ld  E+ ++  Y + +++V + +++  +a++Y l++ 
  MMETSP0890-20130614|38216_1 278 GQLFAVDTNVLeSQLDPLESHPH-FYLRSRCDVIQDDEDLGSAWIYLLNDP 327
                  77888888776258******998.9**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       243  (0.0177736); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.42s 00:00:01.03 Elapsed: 00:00:01.05
# Mc/sec: 821.61
//
Query:       MMETSP0890-20130614|38222_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-19   69.6   0.0    3.7e-19   69.1   0.0    1.2  1  PF00005.22 ABC transporter
    3.7e-05   22.3   0.2    4.2e-05   22.1   0.1    1.2  1  PF09818.4  Predicted ATPase of the ABC class
     0.0077   16.1   0.0     0.0077   16.1   0.0    1.1  1  PF13304.1  AAA domain
  ------ inclusion threshold ------
      0.029   13.4   0.4      0.032   13.3   0.3    1.3  1  PF02463.14 RecF/RecN/SMC N terminal domain
       0.16   11.7   0.5       0.72    9.6   0.3    2.0  1  PF13558.1  Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.3e-22   3.7e-19      26     118 .]       9     110 ..       3     110 .. 0.94

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.3e-22
                  BGGGB-HHHHH..EEEE-------.--BHHHHHH----S---HHHHHHHHHH---HHHH--.........----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22  26 dlesdkleklr..igyipqdpllfpeltvrenldmakeekktdkrieevlekvgldelldk.........srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  d++++ l++lr  i++++q+p lf + tv en++++ +++  d+++e++++  + +++++            ++ +SgGqkqr+alAral+++pklllLDE+t+
  MMETSP0890-20130614|38222_1   9 DIRKITLAQLRsmISVVSQEPVLF-QGTVAENIRYGLPDA-NDDQVEKAAKLANAHDFIQAmpnkyntslGLTNVVSGGQKQRIALARALIRDPKLLLLDEATS 110
                  5677889999999***********.**************9.****************99999*****99888999***************************96 PP

>> PF09818.4  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   1.5e-08   4.2e-05     300     353 ..      59     112 ..      44     139 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.5e-08
    PF09818.4 300 vdispFinnLPegkdttefstedASGStsqAanimealeagakllLiDEDtsAt 353
                  ++   Fi+ +P++++t+   t+  SG  +q  ++++al +  kllL+DE tsA 
  MMETSP0890-20130614|38222_1  59 ANAHDFIQAMPNKYNTSLGLTNVVSGGQKQRIALARALIRDPKLLLLDEATSAL 112
                  56778***********************************************95 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06    0.0077     219     271 ..      54     113 ..       9     139 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.8e-06
    PF13304.1 219 k.........dviflkkgdggelplsdl.SdGtkrllalltallsalekgsvlliDEpEngLH 271
                  k         ++  ++++++  l l ++ S G+k+ +al+ al++++   ++ll+DE  + L 
  MMETSP0890-20130614|38222_1  54 KaaklanahdFIQAMPNKYNTSLGLTNVvSGGQKQRIALARALIRDP---KLLLLDEATSALS 113
                  13555556557777778888888888889******************...*******998886 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.2e-05     0.032     136     209 ..      81     152 ..       4     154 .] 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
                  G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-B..TBEEEEE-S-HHHHTT-SEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksk..naQfivislreemlekadklv 209
                  + SgG+k+ +ala       ++   l llDe  +aL     ++v   l++     +   ++i++r  ++++ad++v
  MMETSP0890-20130614|38222_1  81 VVSGGQKQRIALARA----LIRDPKLLLLDEATSALSTIDEAQVQAALDSLIAtcKLTTLIIAHRLATIKNADNIV 152
                  78*****98887644....46677799********9665555555555544330057789************9986 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00026      0.72      50      87 ..      92     126 ..      66     129 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
    PF13558.1  50 laalyssaegrepsirlvfLDEAFs...klDeeniasllel 87 
                  la ++ +       ++l++LDEA+s   ++De  ++++l+ 
  MMETSP0890-20130614|38222_1  92 LARALIR------DPKLLLLDEATSalsTIDEAQVQAALDS 126
                  3333333......499******9862225678877777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       429  (0.031378); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.37s 00:00:00.82 Elapsed: 00:00:00.78
# Mc/sec: 473.13
//
Query:       MMETSP0890-20130614|38227_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   50.2  10.6    3.8e-07   29.9   0.4    2.7  2  PF12874.2  Zinc-finger of C2H2 type
    6.6e-13   48.2   9.4    8.5e-06   25.6   0.2    2.9  2  PF12171.3  Zinc-finger double-stranded RNA-binding
    1.8e-05   24.6   8.7      0.011   15.9   0.1    3.3  2  PF13894.1  C2H2-type zinc finger
    5.1e-05   23.2   3.4      0.057   13.5   0.2    3.0  2  PF13465.1  Zinc-finger double domain
    0.00055   20.1  13.6      0.043   14.1   0.3    3.3  2  PF00096.21 Zinc finger, C2H2 type
    0.00083   19.0   0.6    0.00083   19.0   0.4    3.2  3  PF13912.1  C2H2-type zinc finger
     0.0083   16.1  18.2      0.079   12.9   0.1    3.4  3  PF12756.2  C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.038   13.6   1.6        3.7    7.3   0.0    2.4  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      0.081   12.6   3.1      0.084   12.5   0.0    2.4  2  PF06150.7  ChaB
       0.13   11.9   0.1       0.13   11.9   0.1    3.0  3  PF04988.7  A-kinase anchoring protein 95 (AKAP95)
       0.97    8.8  10.2        2.1    7.7   7.1    1.5  1  PF04156.9  IncA protein
        5.8    6.8  10.6        2.7    7.9   0.7    3.3  3  PF07975.7  TFIIH C1-like domain


Domain annotation for each model (and alignments):
>> PF12874.2  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   2.5   2.5e-08   2.8e-05       1      25 []     249     273 ..     249     273 .. 0.98
   2 !   29.9   0.4   3.3e-10   3.8e-07       1      25 []     323     347 ..     323     347 .. 0.98

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.5e-08
                  TEETTTTEE-SSHHHHHHHH---HH CS
    PF12874.2   1 fyCelCnvtftSesqlksHlqGKkH 25 
                  f C +C+++f +e +l++Hl+++ H
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHALECHLNSNVH 273
                  79*********************99 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 3.3e-10
                  TEETTTTEE-SSHHHHHHHH---HH CS
    PF12874.2   1 fyCelCnvtftSesqlksHlqGKkH 25 
                  f C++Cn+tftS  +l+sH q++ H
  MMETSP0890-20130614|38227_1 323 FECSICNKTFTSALALESHSQSRAH 347
                  79*********************99 PP

>> PF12171.3  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   2.5   9.2e-09     1e-05       2      27 .]     249     274 ..     249     274 .. 0.98
   2 !   25.6   0.2   7.5e-09   8.5e-06       2      27 .]     323     348 ..     322     348 .. 0.96

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 9.2e-09
                  -B-TTT--B-SSHHHHHHHTT-HHHH CS
    PF12171.3   2 fYCvaCdkyFksenqlknHlksKkHK 27 
                  f C +C+kyF +e++l+ Hl+s  H+
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHALECHLNSNVHQ 274
                  89***********************7 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 7.5e-09
                  -B-TTT--B-SSHHHHHHHTT-HHHH CS
    PF12171.3   2 fYCvaCdkyFksenqlknHlksKkHK 27 
                  f C +C+k+F+s+ +l++H +s++H+
  MMETSP0890-20130614|38227_1 323 FECSICNKTFTSALALESHSQSRAHR 348
                  99***********************7 PP

>> PF13894.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   2.5   0.00085      0.96       1      21 [.     249     269 ..     249     273 .. 0.89
   2 !   15.9   0.1   9.6e-06     0.011       1      19 [.     323     341 ..     323     345 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00085
    PF13894.1   1 faCplCgktFttreeLrrHla 21 
                  f C++C+k F+t ++L+ Hl 
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHALECHLN 269
                  79*****************97 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 9.6e-06
    PF13894.1   1 faCplCgktFttreeLrrH 19 
                  f C++C+ktFt++ +L++H
  MMETSP0890-20130614|38227_1 323 FECSICNKTFTSALALESH 341
                  79***************99 PP

>> PF13465.1  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2    0.0012       1.3       8      26 .]     239     260 ..     229     260 .. 0.75
   2 !   13.5   0.2     5e-05     0.057      12      26 .]     320     334 ..     311     334 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
    PF13465.1   8 kHtgek...pyeCplCgktFkt 26 
                  +H++      +eC +C k+F t
  MMETSP0890-20130614|38227_1 239 DHSPNDndvFFECTVCQKYFRT 260
                  46655533359*********76 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 5e-05
    PF13465.1  12 ekpyeCplCgktFkt 26 
                     +eC++C+ktF++
  MMETSP0890-20130614|38227_1 320 NSSFECSICNKTFTS 334
                  345**********96 PP

>> PF00096.21  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   2.1   0.00012      0.14       1      23 []     249     273 ..     249     273 .. 0.91
   2 !   14.1   0.3   3.8e-05     0.043       1      21 [.     323     343 ..     323     347 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00012
                  EE------EESSHHHHHHHHCC..H CS
   PF00096.21   1 yqCpdCgksFsrksnLlrHlrr..H 23 
                  ++C  C k F++ + L+ Hl++  H
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHALECHLNSnvH 273
                  89******************97555 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.8e-05
                  EE------EESSHHHHHHHHC CS
   PF00096.21   1 yqCpdCgksFsrksnLlrHlr 21 
                  ++C +C+k+F++   L++H  
  MMETSP0890-20130614|38227_1 323 FECSICNKTFTSALALESHSQ 343
                  89*****************65 PP

>> PF13912.1  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       8.2   9.4e+03      23      26 ..     178     181 ..     177     182 .. 0.69
   2 ?    5.6   1.2     0.013        14       2      17 ..     249     264 ..     249     270 .. 0.84
   3 !   19.0   0.4   7.3e-07   0.00083       2      23 ..     323     344 ..     322     348 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 8.2
    PF13912.1  23 shCs 26 
                  shC+
  MMETSP0890-20130614|38227_1 178 SHCK 181
                  7887 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.013
    PF13912.1   2 htCgrCgktFsslqaL 17 
                  ++C++C+k F++  aL
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHAL 264
                  89******99987665 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 7.3e-07
    PF13912.1   2 htCgrCgktFsslqaLggHKks 23 
                  ++C++C+ktF+s  aL  H +s
  MMETSP0890-20130614|38227_1 323 FECSICNKTFTSALALESHSQS 344
                  8******************987 PP

>> PF12756.2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5      0.56   6.4e+02      35      80 ..     142     184 ..     105     203 .. 0.57
   2 !    8.9   4.9    0.0013       1.4      51      82 ..     249     280 ..     197     296 .. 0.81
   3 !   12.9   0.1   6.9e-05     0.079      49      78 ..     321     350 ..     293     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.56
    PF12756.2  35 dleglleylrekieekleClyCekefkslealreHmkkk.gHckiny 80 
                  +  +l e  r+ ie+  +   C++  ks++++++ ++k  +Hck + 
  MMETSP0890-20130614|38227_1 142 NYIHLPERDRRRIEQ--QLAACRQ--KSRRQYEDSIRKLaSHCKRRD 184
                  333444455666666..4567844..467777777765337887654 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0013
    PF12756.2  51 leClyCekefkslealreHmkkkgHckinyee 82 
                  +eC +C+k f++ +al+ H++++ H++    +
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHALECHLNSNVHQRRVAAS 280
                  79***********************9975544 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 6.9e-05
    PF12756.2  49 ekleClyCekefkslealreHmkkkgHcki 78 
                  +++eC +C+k+f+s  al++H +++ H++ 
  MMETSP0890-20130614|38227_1 321 SSFECSICNKTFTSALALESHSQSRAHRNA 350
                  4799***********************875 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.016        18       3      21 ..     249     266 ..     248     274 .. 0.87
   2 ?    7.3   0.0    0.0032       3.7       2      16 ..     322     336 ..     321     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.016
    PF13923.1   3 fsCpiCleelenpviltpC 21 
                  f+C +C++ ++  ++ + C
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHA-LEC 266
                  79*********9965.888 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0032
    PF13923.1   2 rfsCpiCleelenpv 16 
                  +f+C+iC++++++++
  MMETSP0890-20130614|38227_1 322 SFECSICNKTFTSAL 336
                  69********99874 PP

>> PF06150.7  ChaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6       1.8   2.1e+03      21      41 ..     202     222 ..     199     233 .. 0.74
   2 ?   12.5   0.0   7.3e-05     0.084      18      43 ..     329     355 ..     326     358 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.8
    PF06150.7  21 FnsaleeygdeetAhkvAwaA 41 
                  F++  +   ++ +A+ +A+aA
  MMETSP0890-20130614|38227_1 202 FEQRSKAKTEKHNAFMKARAA 222
                  666666667788888888887 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 7.3e-05
    PF06150.7  18 lkaFnsaleey.gdeetAhkvAwaAVk 43 
                  +k+F+sal+   +++++Ah+ A +AV+
  MMETSP0890-20130614|38227_1 329 NKTFTSALALEsHSQSRAHRNALKAVR 355
                  79********99**************8 PP

>> PF04988.7  A-kinase anchoring protein 95 (AKAP95)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4       1.7   1.9e+03      65      65 ..     203     203 ..     147     241 .. 0.61
   2 ?    6.5   1.2    0.0052         6       1      29 [.     249     277 ..     249     288 .. 0.85
   3 ?   11.9   0.1   0.00011      0.13       1      37 [.     323     359 ..     323     361 .] 0.89

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.7
    PF04988.7  65 k 65 
                  +
  MMETSP0890-20130614|38227_1 203 E 203
                  1 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0052
    PF04988.7   1 FtCslCkfrtfeekeiekHleskfHkevl 29 
                  F C++C+     e+ +e Hl+s++H+  +
  MMETSP0890-20130614|38227_1 249 FECTVCQKYFRTEHALECHLNSNVHQRRV 277
                  99****9667778899*********9765 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00011
    PF04988.7   1 FtCslCkfrtfeekeiekHleskfHkevlkyiqtklp 37 
                  F Cs+C         +e+H +s+ H++ lk ++++l 
  MMETSP0890-20130614|38227_1 323 FECSICNKTFTSALALESHSQSRAHRNALKAVRARLR 359
                  99****976677789*****************99986 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.1    0.0018       2.1      93     175 ..     132     211 ..     124     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0018
    PF04156.9  93 le.eeleqleerlaeleseledleedlellq.eelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlq 175
                  +e eel +++++++  e++ + +e++l  ++ + ++++e+++ +l++ +k+   +i+ +r     + e+++++++  +r+++ ++
  MMETSP0890-20130614|38227_1 132 AEsEELAKMRNYIHLPERDRRRIEQQLAACRqKSRRQYEDSIRKLASHCKRRDPRIKTIR-----KLEQMRKEKEFEQRSKAKTE 211
                  55599**************************9****************************.....55555555555555544333 PP

>> PF07975.7  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.4   2.7e+03       4      25 ..     160     181 ..     158     183 .. 0.75
   2 ?    7.9   0.7    0.0023       2.7      10      31 ..     236     258 ..     226     271 .. 0.71
   3 ?    4.1   0.1     0.036        41      18      31 ..     313     332 ..     292     334 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.4
    PF07975.7   4 gCqkklkkkakkkkdssvyrCe 25 
                  +C +k  ++ +++  +   +C+
  MMETSP0890-20130614|38227_1 160 ACRQKSRRQYEDSIRKLASHCK 181
                  7999999888877777777775 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0023
    PF07975.7  10 kkkakkkkd.ssvyrCekCknvF 31 
                  +k++++++d   +++C+ C+++F
  MMETSP0890-20130614|38227_1 236 EKQDHSPNDnDVFFECTVCQKYF 258
                  4444444334899********99 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.036
    PF07975.7  18 d......ssvyrCekCknvF 31 
                         +s ++C+ C+++F
  MMETSP0890-20130614|38227_1 313 PsseqppNSSFECSICNKTF 332
                  2444556899*******999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1654  (0.120977); expected 273.4 (0.02)
Passed bias filter:                      465  (0.0340111); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.68
# Mc/sec: 1272.18
//
Query:       MMETSP0890-20130614|38239_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-57  186.9  17.0    4.7e-11   42.0   1.0    7.3  7  PF00400.27 WD domain, G-beta repeat
    0.00041   19.1   0.0        3.7    6.1   0.0    3.9  5  PF08801.6  Nup133 N terminal like
     0.0044   16.3   0.9        3.5    6.9   0.1    3.3  3  PF13360.1  PQQ-like domain
  ------ inclusion threshold ------
      0.024   12.7   4.7       0.78    7.7   0.0    4.0  4  PF11715.3  Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   1.0   1.4e-14   4.7e-11       1      39 []     159     197 ..     159     197 .. 0.96
   2 !   25.8   0.0   1.7e-09   5.8e-06       3      39 .]     209     245 ..     207     245 .. 0.96
   3 !   30.2   0.0   7.3e-11   2.5e-07       2      39 .]     250     287 ..     249     287 .. 0.95
   4 !   32.2   0.1   1.7e-11   5.7e-08       3      39 .]     293     329 ..     291     329 .. 0.93
   5 !   13.9   0.0   9.9e-06     0.034       1      33 [.     333     365 ..     333     369 .. 0.93
   6 !   32.7   0.0   1.1e-11   3.9e-08       2      39 .]     375     411 ..     374     411 .. 0.95
   7 !   16.0   0.0   2.2e-06    0.0075      11      39 .]     433     461 ..     429     461 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.4e-14
                  TEEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   1 geckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +++ ++ +gH ++V+c+af p   ++++gS D+ti++Wd
  MMETSP0890-20130614|38239_1 159 WKLGTVVSGHLGWVRCCAFEPKNEWFVTGSTDRTIKVWD 197
                  6778999*******************************9 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.7e-09
                  EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  +k tl+gH ++++ +a+sp  ++++s+++D+++  Wd
  MMETSP0890-20130614|38239_1 209 LKLTLTGHINAIRGLAVSPRTTYMFSAGEDKKVLCWD 245
                  6889********************************9 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 7.3e-11
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++++ ++gH s+V+++a +p   ll++g+rD++ r+Wd
  MMETSP0890-20130614|38239_1 250 KVIRRYHGHLSGVYSLALHPMLDLLVTGGRDSCARVWD 287
                  678899*******************************9 PP

  == domain 4    score: 32.2 bits;  conditional E-value: 1.7e-11
                  EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++  l gHt++V ++a++   p +++gS D+t++lWd
  MMETSP0890-20130614|38239_1 293 QIMMLGGHTHTVGALACNSIDPQVITGSNDSTVKLWD 329
                  566799******************************9 PP

  == domain 5    score: 13.9 bits;  conditional E-value: 9.9e-06
                  TEEEEEEESSSSSEEEEEEESSSTEEEEEETTS CS
   PF00400.27   1 geckatlrgHtspVtcvafspdgpllasgSrDg 33 
                  g+ ++tl++H++++++++ +p    ++++ +D+
  MMETSP0890-20130614|38239_1 333 GKAITTLTHHKKGIRDLCLAPFDFSFVTAAADN 365
                  57899**************************98 PP

  == domain 6    score: 32.7 bits;  conditional E-value: 1.1e-11
                  EEEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspdgpllasgSrDgtirlWd 39 
                  + ++ + gH++ V++va+++d ++l+sg++Dg++r Wd
  MMETSP0890-20130614|38239_1 375 TFLHNYVGHNAIVNAVAVNQD-QVLVSGGDDGSLRFWD 411
                  5688999**************.***************9 PP

  == domain 7    score: 16.0 bits;  conditional E-value: 2.2e-06
                  SSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  11 tspVtcvafspdgpllasgSrDgtirlWd 39 
                  ++++ +  f+ +g++l+++ +D+ti++W+
  MMETSP0890-20130614|38239_1 433 ENGIFATTFDKSGSRLITCEADKTIKIWK 461
                  5778888999******************6 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.013        45     199     220 ..     179     200 ..     165     213 .. 0.84
   2 ?    2.4   0.0     0.014        48     201     220 ..     181     200 ..     177     260 .. 0.80
   3 !    6.1   0.0    0.0011       3.7     184     223 ..     290     335 ..     222     363 .. 0.73
   4 !    5.2   0.0    0.0019       6.5     188     227 ..     382     421 ..     356     461 .. 0.81
   5 ?   -0.4   0.0     0.096   3.3e+02     182     218 ..     426     462 ..     417     474 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.013
    PF08801.6 199 ssrrilytlsskgtirvwdlsp 220
                  ++ ++ +t s+++ti+vwdl +
  MMETSP0890-20130614|38239_1 179 PKNEWFVTGSTDRTIKVWDLAK 200
                  556899*************976 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.014
    PF08801.6 201 rrilytlsskgtirvwdlsp 220
                   ++ +t s+++ti+vwdl +
  MMETSP0890-20130614|38239_1 181 NEWFVTGSTDRTIKVWDLAK 200
                  47889999999999999876 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0011
    PF08801.6 184 s.......aseqeteivqlridssrrilytlsskgtirvwdlspsge 223
                  +       +++++t + +l++ s+   ++t s+++t++ wdl  ++ 
  MMETSP0890-20130614|38239_1 290 TskqimmlGGHTHT-VGALACNSIDPQVITGSNDSTVKLWDLAMGKA 335
                  04444444567799.***************************86443 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.0019
    PF08801.6 188 qeteivqlridssrrilytlsskgtirvwdlspsgeslks 227
                   +++iv  ++ ++ ++l++   +g++r+wd++++ +  k 
  MMETSP0890-20130614|38239_1 382 GHNAIVNAVAVNQDQVLVSGGDDGSLRFWDYTTGYNFFKT 421
                  5788999999*********************998777665 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.096
    PF08801.6 182 lpsaseqeteivqlridssrrilytlsskgtirvwdl 218
                  +p++ e e++i + + d+s   l+t  +++ti++w+ 
  MMETSP0890-20130614|38239_1 426 QPGSLECENGIFATTFDKSGSRLITCEADKTIKIWKE 462
                  555567788899999999999**************85 PP

>> PF13360.1  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.039   1.3e+02     137     179 ..      75     126 ..      41     152 .. 0.50
   2 !    4.6   0.0    0.0048        17     201     236 ..     217     253 ..     182     255 .. 0.73
   3 !    6.9   0.1     0.001       3.5       2      98 ..     322     417 ..     321     469 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.039
    PF13360.1 137 ldlktGkvlWerpl.aaprgssels......rlgdiagrpvia.gg.rvfas 179
                  +++ tGkv+ +++   +++ s +        ++  ++g++v + +g +vf  
  MMETSP0890-20130614|38239_1  75 VNILTGKVRRKKRPrEKNKESDDNRgksiavSYDKKTGTLVETmSGsQVFQK 126
                  3333333322222212222111111222223444444444444311344444 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0048
    PF13360.1 201 issinglpildgdvlyvvs.ddgelvaldlktGkvlW 236
                  i++i gl +  + + +    +d +++++dl+t kv+ 
  MMETSP0890-20130614|38239_1 217 INAIRGLAVSPRTTYMFSAgEDKKVLCWDLETNKVIR 253
                  6667774444444444444578999999999999976 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.001
    PF13360.1   2 egvvsaldaatGkelWrvdlkpalgggvseavldggtlfvasakgrlvaldaatGkvlWskslegeiegaplvaggrvvvvtadn.slvaldaetGkl 98 
                  +++v+ +d a Gk + + +    ++g +   + + +  fv+ a ++l  + a +G+ l  +   + i++a  v++++v v  +d+ sl+  d +tG  
  MMETSP0890-20130614|38239_1 322 DSTVKLWDLAMGKAITTLTH--HKKGIRDLCLAPFDFSFVTAAADNLKHWQARDGTFLHNYVGHNAIVNAVAVNQDQVLVSGGDDgSLRFWDYTTGYN 417
                  56777777777777777766..3455555555566777888899999999999999999999999999999999999988886666999999999865 PP

>> PF11715.3  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.12   4.2e+02     238     249 ..     188     199 ..     181     215 .. 0.87
   2 ?    2.8   0.0    0.0067        23     220     255 ..     222     253 ..     207     311 .. 0.71
   3 ?    0.2   0.0     0.043   1.5e+02     235     257 ..     317     339 ..     299     362 .. 0.89
   4 ?    7.7   0.0   0.00023      0.78     203     253 ..     366     417 ..     354     451 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.12
    PF11715.3 238 srDgkLRvWnle 249
                  s D++++vW+l+
  MMETSP0890-20130614|38239_1 188 STDRTIKVWDLA 199
                  78********96 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0067
    PF11715.3 220 sldvsssevegqtfvftlsrDgkLRvWnletgqclr 255
                   l+vs+      t+ f+   D+k+  W+let++ +r
  MMETSP0890-20130614|38239_1 222 GLAVSP----RTTYMFSAGEDKKVLCWDLETNKVIR 253
                  556666....67888888888888888888888854 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.043
    PF11715.3 235 ftlsrDgkLRvWnletgqclrtt 257
                  +t s D ++++W+l+ g+ ++t 
  MMETSP0890-20130614|38239_1 317 ITGSNDSTVKLWDLAMGKAITTL 339
                  56688**********99998876 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.00023
    PF11715.3 203 llgfk.yrkarsassaaasldvsssevegqtfvftlsrDgkLRvWnletgqc 253
                  l  ++  +++++  ++  + +v  + v++++++++   Dg LR W+++tg +
  MMETSP0890-20130614|38239_1 366 LKHWQaRDGTFLHNYVGHNAIVNAVAVNQDQVLVSGGDDGSLRFWDYTTGYN 417
                  556678889999999**********************************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.39s 00:00:01.24 Elapsed: 00:00:01.06
# Mc/sec: 1089.66
//
Query:       MMETSP0890-20130614|38253_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.014   14.4   0.0    1.0  1  PF01430.14 Hsp33 protein


Domain annotation for each model (and alignments):
>> PF01430.14  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-06     0.014       2      41 ..      27      66 ..      26      67 .] 0.93

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1e-06
   PF01430.14  2 dklvrflledadvRgelvrltelvqeilerhdyppavsal 41
                 d lvr++++d+ v + + ++t++v ei+e ++++ +++++
  MMETSP0890-20130614|38253_1 27 DVLVRAISKDGYVSAKVTDTTNAVAEICELQQCKRLAATA 66
                 89******************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 232.69
//
Query:       MMETSP0890-20130614|38254_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.6  21.5      0.041   13.5  14.9    1.4  1  PF12718.2  Tropomyosin like
       0.02   14.1   0.2        1.5    8.1   0.0    2.7  2  PF13227.1  Protein of unknown function (DUF4035)
       0.34   10.5  17.5       0.53    9.9   1.2    2.5  2  PF08074.6  CHDCT2 (NUC038) domain
        0.4    8.3   7.2       0.51    7.9   5.0    1.1  1  PF01496.14 V-type ATPase 116kDa subunit family
       0.42    9.5  28.4      0.036   13.0  13.1    2.5  3  PF00261.15 Tropomyosin
        1.4    7.3   5.9        1.5    7.1   4.1    1.2  1  PF04791.11 LMBR1-like membrane protein
        2.9    7.7  26.2      0.066   13.1  10.1    2.4  2  PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
        4.5    6.6  25.2       0.21   11.0  11.6    2.2  2  PF00769.14 Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  14.9   2.4e-05     0.041      11     140 ..      31     164 ..      27     166 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-05
    PF12718.2  11 naqekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae....altrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEeerdeweekleelekklke 140
                  + q+ a +++ ++ +l  +  ++E+  +s +kK +++   + ++e++ k+++ +le + ++++++e      +++  +L +el+++e+r ++     ++ ++  +  ++ v+aLE+++++ e   ++ +++l++
  MMETSP0890-20130614|38254_1  31 ESQADAVAAKIQVEKLTSNLHDQERAARSYEKKARETSRKIVQIETTYKNSTLALEHAFERAAQIEaalaDAEKKALQLSQELQQAERRAQTQARLAENFRQDRDAADQVVRALEKRAEAAEFHANQSAAELQA 164
                  6788899999999*****************************************************9888889*****************9999999999999999999999**********999999888876 PP

>> PF13227.1  Protein of unknown function (DUF4035)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.037        62      17      36 ..      91     110 ..      78     121 .. 0.86
   2 ?    8.1   0.0   0.00086       1.5      16      37 ..     274     297 ..     273     299 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.037
    PF13227.1  17 raAqIasAvlnsqgkkvkls 36 
                  raAqI +A+  ++ k ++ls
  MMETSP0890-20130614|38254_1  91 RAAQIEAALADAEKKALQLS 110
                  9********99999888887 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00086
    PF13227.1  16 iraAqIas..AvlnsqgkkvklsD 37 
                  +r Aq+a+  A ++++++ +k+++
  MMETSP0890-20130614|38254_1 274 MRKAQLAKelASYGRDPAGLKVNE 297
                  589*****************9997 PP

>> PF08074.6  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.2   0.00031      0.53      89     137 ..       5      53 ..       1      79 [. 0.82
   2 ?    4.6   6.7     0.013        22      67     137 ..      80     151 ..      56     183 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00031
    PF08074.6  89 dhpamalaarfaeleclaeshqhlskeslagnknanavlhkvlaqleel 137
                  d+  + l a+  ++e +ae +  +++es+a++  a+  ++k  ++l++ 
  MMETSP0890-20130614|38254_1   5 DEQSVRLRANVVDAERIAEEKSIIAQESQADAVAAKIQVEKLTSNLHDQ 53 
                  5667899*****************************9999998888764 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.013
    PF08074.6  67 eqalvieeqlrraaklnlkq.dpdhpamalaarfaeleclaeshqhlskeslagnknanavlhkvlaqleel 137
                  + +l +e  + raa+++  + d+++ a +l++ + ++e  a+++++l+ +  ++   a  v++   +  e++
  MMETSP0890-20130614|38254_1  80 NSTLALEHAFERAAQIEAALaDAEKKALQLSQELQQAERRAQTQARLAENFRQDRDAADQVVRALEKRAEAA 151
                  467999**********9875389999*********************9877776666666666555555544 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.0    0.0003      0.51      10     129 ..      41     166 ..      37     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0003
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXX.....X CS
   PF01496.14  10 vqfrDlnedvsafqrkfvnevrrldeverklrkleseikkakielkdekekpdvpeskevedleeeleeleeelkeve...eslesLekelneleelr.nvlreekefleenk...veelrelssld 129
                  +q++ l +++ +++r      +++ e++rk++++e   k+  ++l+ + +++ ++ +  ++d e+++ +l +el+++e   +++ +L +++++    + +v+r  ++  e+++   ++++ el+   
  MMETSP0890-20130614|38254_1  41 IQVEKLTSNLHDQERAARSYEKKARETSRKIVQIETTYKNSTLALE-HAFERAAQIEAALADAEKKALQLSQELQQAErraQTQARLAENFRQDRDAAdQVVRALEKRAEAAEfhaNQSAAELQAAL 166
                  7999999999*9***99999**************999999999998.89999999999999999999999999999872224566788888766554414444444444443344433333343333 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.2     0.013        23      83     127 ..      32      76 ..       2      81 .. 0.56
   2 ?    5.4   7.5    0.0044       7.6       6      78 ..      32     104 ..      25     114 .. 0.73
   3 ?   13.0  13.1   2.1e-05     0.036       1     115 [.      62     176 ..      62     179 .. 0.93

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.013
   PF00261.15  83 lEnrelkddekleqlekqlkeakeiaeeadrkyeEvarklvvvek 127
                   +  + +   ++e+l  +l++ ++ a + ++k  E +rk+v +e+
  MMETSP0890-20130614|38254_1  32 SQADAVAAKIQVEKLTSNLHDQERAARSYEKKARETSRKIVQIET 76 
                  333333333445555555555555555555555555555555553 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0044
   PF00261.15   6 leeeldkaeerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeser 78 
                   + ++  a+ ++e+++++l+++e++a + e+ +    r+i ++E  +++s   le+a e+  ++e a  + e+
  MMETSP0890-20130614|38254_1  32 SQADAVAAKIQVEKLTSNLHDQERAARSYEKKARETSRKIVQIETTYKNSTLALEHAFERAAQIEAALADAEK 104
                  4555566777888888888888888888888888888888888888888888888888887777776555554 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2.1e-05
   PF00261.15   1 kKlkqleeeldkaeerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlkeakeiaeeadrky 115
                  kK +++  ++ ++e+  ++ +  le+a +ra++ ea  a  +++  +l +el+++e r +++ +  e++ +  d  ++++++lE+r+ + +   +q  ++l+ a   + e+d+k+
  MMETSP0890-20130614|38254_1  62 KKARETSRKIVQIETTYKNSTLALEHAFERAAQIEAALADAEKKALQLSQELQQAERRAQTQARLAENFRQDRDAADQVVRALEKRAEAAEFHANQSAAELQAALLNTIESDNKL 176
                  7999***************************************************99999866666778999999****************************999999999986 PP

>> PF04791.11  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.1    0.0009       1.5     197     303 ..      17     148 ..       7     264 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0009
   PF04791.11 197 kaekledeke..eaessvddilesvdrl..srlledveeqisksateegklsrelkkaaesnsq.eedslaldreenkivkseeklllikeedlksletlknkkaqrkvav.......................l 303
                  +ae+ ++ek+   +es+ d++  ++++   ++ l d e+  ++ +   ++ sr++    + + + ++  lal++  ++  + e++l+  +++ l+++++l++++ +++++                        +
  MMETSP0890-20130614|38254_1  17 DAERIAEEKSiiAQESQADAVAAKIQVEklTSNLHDQERAARSYEKKARETSRKIV---QIETTyKNSTLALEHAFERAAQIEAALADAEKKALQLSQELQQAERRAQTQArlaenfrqdrdaadqvvralekrA 148
                  47777777762245666666666666543355555555555555555555555555...44444044567888999999999************************99998666666666666655555555550 PP

>> PF13094.1  CENP-A-nucleosome distal (CAD) centromere subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   3.2      0.54   9.2e+02      22      70 ..      18      70 ..       6      80 .. 0.64
   2 ?   13.1  10.1   3.8e-05     0.066      16     129 ..      79     201 ..      68     223 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.54
    PF13094.1 22 yeqllqekr..alerqla..aelksielLqeeirreeaelekdeekleeLekn 70
                  e+  +ek   a+e+q+   a++ ++e+L ++++++e +  + e+k +e  ++
  MMETSP0890-20130614|38254_1 18 AERIAEEKSiiAQESQADavAAKIQVEKLTSNLHDQERAARSYEKKARETSRK 70
                 55555555433566666655667788888888888887777777777665555 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.8e-05
    PF13094.1  16 kessfdyeqllqekralerqlaaelksielLqeeirreeaelekdeekleeLeknakalererkeesknlhpvlqelesevleenalaekedlklseknleptl...........deellellkq 129
                  k+s +  e++ ++ ++ e  la+++k   +L  e+++ e   ++  +  e ++++  a++++++ ++k+++    +++++++e +a + ++    s+++l+  l           d++l++++++
  MMETSP0890-20130614|38254_1  79 KNSTLALEHAFERAAQIEAALADAEKKALQLSQELQQAERRAQTQARLAENFRQDRDAADQVVRALEKRAEAAEFHANQSAAELQAALLNTI--ESDNKLAIALnavgniddlssDDDLSSIIER 201
                  5788999**************************************************************95555555555555544444444..1333333333334444444446677766665 PP

>> PF00769.14  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   3.3     0.084   1.4e+02      49      97 ..      29      77 ..       4      84 .. 0.71
   2 ?   11.0  11.6   0.00012      0.21       3     134 ..      60     188 ..      59     265 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.084
   PF00769.14 49 aqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleee 97
                 aq+++++a +++ + e+L ++  ++e+  +  ek+ +e  +++ ++e  
  MMETSP0890-20130614|38254_1 29 AQESQADAVAAKIQVEKLTSNLHDQERAARSYEKKARETSRKIVQIETT 77
                 5666777777777777777777788887788888888888877777765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00012
   PF00769.14   3 aerereelekrleqleeemrkaqkeleeseekaeeleeklkqeeeeaqklekkakeleeekerLeeeaaksekekeeLekevdeaeaevakleeerekkeaeteqlqkelreareaeeeakeellevlaap....t 134
                  +e++ +e  +++ q+e   +++  +le++ e+a++ e+ l          ekka +l +e ++ e++a+ +++  e+ ++ +d+a+  v  le+  e+ e  ++q ++el++a  +  e+ ++l+ +l+a      
  MMETSP0890-20130614|38254_1  60 YEKKARETSRKIVQIETTYKNSTLALEHAFERAAQIEAALAD-------AEKKALQLSQELQQAERRAQTQARLAENFRQDRDAADQVVRALEKRAEAAEFHANQSAAELQAALLNTIESDNKLAIALNAVgnidD 188
                  689999999999999999999999999998888877766655.......5566666667777777778888888889************************************99999999999999988744441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1839  (0.134508); expected 273.4 (0.02)
Passed bias filter:                      485  (0.035474); expected 273.4 (0.02)
Passed Vit filter:                        67  (0.00490053); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.86u 0.37s 00:00:01.23 Elapsed: 00:00:00.93
# Mc/sec: 827.13
//
Query:       MMETSP0890-20130614|38272_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 222.27
//
Query:       MMETSP0890-20130614|38269_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00048   20.1   0.2     0.0014   18.6   0.2    1.8  1  PF13499.1  EF-hand domain pair
     0.0009   18.2   0.2     0.0009   18.2   0.2    2.2  2  PF00036.27 EF hand
     0.0015   18.1   1.8      0.098   12.4   0.1    3.4  4  PF13405.1  EF-hand domain
  ------ inclusion threshold ------
      0.027   13.9   0.3      0.076   12.5   0.2    1.7  1  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   4.1e-07    0.0014       8      65 ..     134     188 ..     126     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.1e-07
    PF13499.1   8 llDkdgdgyldkeeLlrllkhlgselsdeevrevl.dyifkelDkngdGvlsfeEflqa 65 
                   +D  + g + +  ++++ +h +    d++ + +l ++ +kelD +++G +sfeEf+ a
  MMETSP0890-20130614|38269_1 134 IFDDKCKGCIARSTITEMQRHNQ----DDGNDLFLqEDRWKELDWDQNGEVSFEEFVFA 188
                  57888999999999999999999....666666441357*****************865 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.4   4.7e+03      12      19 ..      36      43 ..      35      44 .. 0.81
   2 !   18.2   0.2   2.6e-07    0.0009       6      26 ..     169     189 ..     166     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
                 TTSSEBEH CS
   PF00036.27 12 DgdGkIsf 19
                 Dgd kI+ 
  MMETSP0890-20130614|38269_1 36 DGDDKIEA 43
                 99999986 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.6e-07
                  HHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27   6 FkefDkDgdGkIsfeEfkeal 26 
                  +ke+D D++G +sfeEf+ a+
  MMETSP0890-20130614|38269_1 169 WKELDWDQNGEVSFEEFVFAF 189
                  89***************9876 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.042   1.4e+02      13      27 ..      12      26 ..      10      37 .. 0.84
   2 ?   -1.6   0.0      0.95   3.2e+03      11      20 ..      35      44 ..      31      44 .. 0.81
   3 ?   -1.6   0.0      0.96   3.3e+03       4      18 ..     130     144 ..     128     152 .. 0.78
   4 !   12.4   0.1   2.9e-05     0.098       6      27 ..     169     190 ..     164     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.042
                 ----B---HHHHHHH CS
    PF13405.1 13 gdGkidaeELrdaLr 27
                 ++ + d+++++++L 
  MMETSP0890-20130614|38269_1 12 KTKFMDKKDCQRVLG 26
                 67899********98 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.95
                 ------B--- CS
    PF13405.1 11 kdgdGkidae 20
                  dgd ki+a+
  MMETSP0890-20130614|38269_1 35 GDGDDKIEAD 44
                 5999999875 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.96
                  ---GCC-------B- CS
    PF13405.1   4 eaFklfDkdgdGkid 18 
                  +a+ +fD+  +G+i 
  MMETSP0890-20130614|38269_1 130 AAYLIFDDKCKGCIA 144
                  567789998889885 PP

  == domain 4    score: 12.4 bits;  conditional E-value: 2.9e-05
                  -GCC-------B---HHHHHHH CS
    PF13405.1   6 FklfDkdgdGkidaeELrdaLr 27 
                  +k +D d++G++++eE++ a++
  MMETSP0890-20130614|38269_1 169 WKELDWDQNGEVSFEEFVFAFS 190
                  789**************99987 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.2e-05     0.076      32      51 ..     170     189 ..     170     191 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
    PF13833.1  32 refDtdgdGkisfeEFcvll 51 
                  +e+D d++G +sfeEF++++
  MMETSP0890-20130614|38269_1 170 KELDWDQNGEVSFEEFVFAF 189
                  689**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       650  (0.0475424); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.74
# Mc/sec: 735.10
//
Query:       MMETSP0890-20130614|38268_1  [L=851]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-12   45.6   2.3    1.2e-11   44.0   1.6    1.9  1  PF07885.11 Ion channel
    3.1e-06   26.4   8.4    3.1e-06   26.4   5.9    2.3  2  PF00520.26 Ion transport protein
  ------ inclusion threshold ------
       0.33   10.8   3.8       0.16   11.8   0.8    1.8  2  PF13311.1  Protein of unknown function (DUF4080)
       0.42   10.5   3.2         10    6.0   0.6    2.9  3  PF08570.5  Protein of unknown function (DUF1761)


Domain annotation for each model (and alignments):
>> PF07885.11  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   1.6   3.4e-15   1.2e-11      27      77 ..     358     408 ..     342     410 .. 0.92

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 3.4e-15
   PF07885.11  27 dalYfsfvtltTiGYGdivPgtdagrlfaivyillGlalfalllavlgdvl 77 
                   ++Y+s++t++T+GYGd++P+t++ ++ + +++l G++ fa+l++ +gd +
  MMETSP0890-20130614|38268_1 358 LCFYWSLTTVSTVGYGDLTPNTPLEMIYTGIVMLAGVSWFAVLVSSVGDEV 408
                  58**********************99999******************9876 PP

>> PF00520.26  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   5.9   9.1e-10   3.1e-06       1     192 [.     163     397 ..     163     404 .. 0.72
   2 ?   -3.1   0.0         1   3.5e+03     129     152 ..     604     643 ..     572     655 .. 0.67

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 9.1e-10
                  XXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXX...XXXXXXXXXX...XXXX.XXXXXXXXXXXXXXXXXXXX-----S-SSSS-----TTT........................-S--------HHHHH-XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX.XXX CS
   PF00520.26   1 ileyvftiiftlemllkiialgfkl...........kftylrdpwnilDflvvlpslvslilrllnkas.........gllavlrllrvlRllrl...lsrieglrtl..lisli.rsvkallnvlllllfvlfifaiigvqlfggklrkkcvke........................kagenpnngntnfdtfgeafltlfrlmtgegwgdlmyatlragskigyiyfvifiilgsflll 192
                  i+ ++ t++f ++ l++ i+ +               ++y+++++  lD+l ++p    ++++   k +          l+ ++r++++ +++++   + +++ l+ +  l  ++ + + al+  lll +++ +    ig+ +   +++  c  +                        +    +  +++    +  +f++++++++++g+gdl+++     + +++iy +i+++ g+   +
  MMETSP0890-20130614|38268_1 163 IIRIFSTTWFSCDLLINCITSYTRRdgkrviglvpvFKNYIKTWFV-LDVLTTVPWETMILAACRTKCQnrrgiafflDLIPIARAFKLSKFVKArehYDASPDLSEIlcLPPFVeTLFWALFAALLLNHLFGCLWYAIGYRFRILNYDLLCAAQnapiegieltsrtgkiarekctwmQLYGLQPSKQSRIYLYTLCFYWSLTTVSTVGYGDLTPN-----TPLEMIYTGIVMLAGV-SWF 397
                  578999****************977**********77788877776.********9777777666666699*766666555555555555444431114455555555444455555555566555555555555555555555555555555559*******************9999555555566677788999********************.....********77776655.444 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1
                  T................-S--------HHHHH-XXXXXXX CS
   PF00520.26 129 e................kagenpnngntnfdtfgeafltl 152
                  +                + +en++n+ t +++ ++++l++
  MMETSP0890-20130614|38268_1 604 QnllslivkstrtfravNDEENQQNKPTRWQSMASSILST 643
                  0455555555555555667788888888888888888876 PP

>> PF13311.1  Protein of unknown function (DUF4080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   4.7e-05      0.16      96     156 ..       4      65 ..       1      97 [. 0.75
   2 ?   -3.8   0.0         3     1e+04     127     148 ..     436     457 ..     424     492 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
    PF13311.1  96 eklkeelellkellkyDyllrekakkrPefleakeekeekeeikefllkeeekl.ekllpea 156
                  ek  ee+e  +e++ +Dy++++  ++ P +++++e++ ++++ ++f+ +++  + ek++  +
  MMETSP0890-20130614|38268_1   4 EKDDEEEESREEAVEFDYVKNDDENSPPLVFNDDERHVFEDRAYDFFSQSQIDWlEKNVDTQ 65 
                  5666789999************************************9998866514433333 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3
    PF13311.1 127 eakeekeekeeikefllkeeek 148
                  ++ ++k+ k+++k+f+ k++  
  MMETSP0890-20130614|38268_1 436 SKAKQKRMKRSLKAFMYKHHVD 457
                  4555555566666665554333 PP

>> PF08570.5  Protein of unknown function (DUF1761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.6     0.003        10       1      21 [.     280     300 ..     280     316 .. 0.94
   2 ?   -2.1   0.1      0.98   3.3e+03      83     106 ..     361     384 ..     336     408 .. 0.49
   3 ?    3.3   0.0     0.021        70      13      35 ..     687     709 ..     685     724 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.003
    PF08570.5   1 wlavlvAalaafvigflwYgp 21 
                  ++a+++A l+++++g lwY +
  MMETSP0890-20130614|38268_1 280 FWALFAALLLNHLFGCLWYAI 300
                  799****************86 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.98
    PF08570.5  83 lglgfiapilisnalfegkslklv 106
                   ++ + ++++++  l  +++l+++
  MMETSP0890-20130614|38268_1 361 YWSLTTVSTVGYGDLTPNTPLEMI 384
                  344444444444444444443333 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.021
    PF08570.5  13 vigflwYgplFgkaWaramglte 35 
                   +g++w  plF+  W + m + +
  MMETSP0890-20130614|38268_1 687 CLGAVWLKPLFAVCWCELMIIPD 709
                  58*************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1098  (0.0803101); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:01.35
# Mc/sec: 1510.59
//
Query:       MMETSP0890-20130614|38280_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-14   51.3   2.1    1.1e-13   50.7   1.4    1.2  1  PF01062.16 Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> PF01062.16  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   1.4   7.8e-18   1.1e-13      20     278 ..     116     419 ..     102     435 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 7.8e-18
   PF01062.16  20 lrwrgsilksil.kellvflllyll.vtliy.......................ifeklvkyklsalpf.tliplaLsflLGFrvnavydRWwearklWGalvnwirslarqvstlvegkde.......rrrllrrtia..yavllqvl.lrdisaavkkr.....lealveaglmteeee.kle..ks..knkpywvpivwaeslqkarkegr.lddialkaldeelnelrealggleridwtpiPlaYtqlvhlavylyflllpfglqdeldlvt.plltvlqfyffvglekvaeeLenPFGedd 278
                   +w g+i++s++  e+ + ++++l+ v+++y                           +v   +++ +f +l+ + ++f+L+F+ ++ y+ W e + +  ++ +   +l ++++t  e++ +       +r ++   i   ya l ++l + +++ + +       l+al + g  t++e  +l   +s  + +  w+   +a+s+++ + +g     ++++ + ++l++ + ++g      +  + laYt lv+l+v + +l+ p++l+  l+ +  ++ t+ + +f+ g++++a+  ++PF+++d
  MMETSP0890-20130614|38280_1 116 RQWDGTIVRSVMfNEVKLNMAWALIsVSIVYhilprallvqqslggfdsvtldaCRSAVVASLKPIENFwALTQTLVAFVLSFFLSQTYAVWREVYSIARKIQGRLSDLGLLLATNGERDLTrpdtpysTRAIVTMEIWarYARLFNMLfFASVTRRFAPLatpkgLQALNAQGAITSDEVkTLLatTSyhQTVCLWMSTLIANSIHNGAIQGAsGVAYQCSLMITNLRAHYGQMGDAL---SGRMNLAYTHLVQLFVDMLCLAAPLALVGPLGAFGaIIGTAAVTLFYAGVLALAKMFLDPFDNED 419
                  479999999987556666666665425566678999999999999999999998444444444444444247777899********************999999999999999999766655777799866666666667999999999777666555433677799999999887777775555662244778999999999999777777775777777777777666666666655...56799****************************987899**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.89
# Mc/sec: 1704.38
//
Query:       MMETSP0890-20130614|38297_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       441  (0.0322557); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.34s 00:00:00.66 Elapsed: 00:00:00.70
# Mc/sec: 208.83
//
Query:       MMETSP0890-20130614|38291_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-29  100.8   0.2    3.6e-29  100.4   0.2    1.1  1  PF09585.5 Conserved hypothetical protein (Lin0512_fam)


Domain annotation for each model (and alignments):
>> PF09585.5  Conserved hypothetical protein (Lin0512_fam)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.2   2.7e-33   3.6e-29       2     113 .]      78     193 ..      77     193 .. 0.96

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 2.7e-33
    PF09585.5   2 rlivelGmGvdlhgqdvtkAAkrAvkdAishnslpglaellgldleemkvevkvgvprp..ekvdeeavkavlPyGk.vevevvkGGllv.sgidveelgdkndeivianaavevs 113
                  ++++e+G+Gvd hgq+vtkA +rA ++Ai+ ns+p +a+l++   + +k+++++++p+   +++d ++v av+PyG+ ++ ++++GG l  sgi+++elgd+nd++++a +av+v+
  MMETSP0890-20130614|38291_1  78 VMFIEVGFGVDGHGQNVTKATVRAARNAIEFNSIPCVADLVPGGRHGLKLKIDIAIPQIyhKDLDLSQVYAVFPYGTiISTQIQSGGALFsSGIALAELGDQNDQMLVAAVAVTVG 193
                  79*******************************************************987799**************8999******9888**********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.65
# Mc/sec: 715.22
//
Query:       MMETSP0890-20130614|38301_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       225  (0.016457); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 486.02
//
Query:       MMETSP0890-20130614|38292_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0017   17.9   0.0     0.0087   15.7   0.0    2.3  2  PF00627.26 UBA/TS-N domain


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1      0.87   1.2e+04      18      25 ..       4      11 ..       3      11 .. 0.82
   2 !   15.7   0.0   6.4e-07    0.0087       2      36 ..      51      85 ..      50      85 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.87
                 HHHHHHHH CS
   PF00627.26 18 eakkALra 25
                 +a++ALra
  MMETSP0890-20130614|38292_1  4 DAVDALRA 11
                 78999997 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 6.4e-07
                 THHHHHHHHH----HHHHHHHHHHTTTSHHHHHHH CS
   PF00627.26  2 deeaiqqLreMGfsreeakkALratnnnvErAvey 36
                 ++++i +L+ +Gfs + a++A  a++n+ E A+ +
  MMETSP0890-20130614|38292_1 51 NPSLITHLVSLGFSQNGATRAAMACDNSTELAISW 85
                 67899****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:01.26
# Mc/sec: 1531.01
//
Query:       MMETSP0890-20130614|38305_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   11.7   1.1       0.25   11.4   0.1    1.6  2  PF08438.5 GTPase of unknown function C-terminal


Domain annotation for each model (and alignments):
>> PF08438.5  GTPase of unknown function C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.32   4.4e+03       9      21 ..      86      98 ..      80     112 .. 0.41
   2 ?   11.4   0.1   1.8e-05      0.25       2      35 ..     116     149 ..     115     164 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.32
                 S-HHHHHHHHHHH CS
    PF08438.5  9 aaeenieklkeke 21
                 +a++n+ + ++  
  MMETSP0890-20130614|38305_1 86 KADANFLRARTAR 98
                 4444444444321 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.8e-05
                  EE-GGG.S-HHHHHHHHHHH---EEEEE-HHHHH CS
    PF08438.5   2 aNKaDlsaaeenieklkekeedekvvptsAeaEl 35 
                  +NK+D + ++e+ e  +++ +d+k v+tsA+a +
  MMETSP0890-20130614|38305_1 116 LNKIDPESPQEQSEDATNNIQDKKRVFTSAKALI 149
                  8****888**********9999********9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 659.00
//
Query:       MMETSP0890-20130614|38303_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   16.1   0.3      0.011   15.2   0.2    1.5  1  PF11946.3 Domain of unknown function (DUF3463)


Domain annotation for each model (and alignments):
>> PF11946.3  Domain of unknown function (DUF3463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   7.9e-07     0.011      18      75 ..      88     147 ..      68     151 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.9e-07
    PF11946.3  18 flkrketkelfrevfkkgk.kkkwklnqsplfldflaGeke.yeCtpWgnPtrnvfGWqk 75 
                  + +   tk++f  ++ ++  k++w + +s+l + f+ G +   +   Wg Pt  +f W++
  MMETSP0890-20130614|38303_1  88 YTNSVFTKSKFGLIHPNSAfKRRWDFASSALAVAFVFGAEArATAERWGFPTFIIFLWKS 147
                  5666678999999998877699****************876155678***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       914  (0.066852); expected 273.4 (0.02)
Passed bias filter:                      425  (0.0310854); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.42s 00:00:01.33 Elapsed: 00:00:00.84
# Mc/sec: 1440.67
//
Query:       MMETSP0890-20130614|38318_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   12.7   0.7      0.095   12.0   0.5    1.3  1  PF05829.7 Adenovirus late L2 mu core protein (Protein X)


Domain annotation for each model (and alignments):
>> PF05829.7  Adenovirus late L2 mu core protein (Protein X)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5     7e-06     0.095       7      32 ..       5      30 ..       3      34 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7e-06
    PF05829.7  7 alrrrlrGGfLPaLiPiiAAaIgAiP 32
                 ++r  + G + P+ +PiiA a gA P
  MMETSP0890-20130614|38318_1  5 SRRAMMAGSITPIFAPIIAQASGAGP 30
                 5778899****************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       363  (0.0265506); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.85
# Mc/sec: 270.65
//
Query:       MMETSP0890-20130614|38332_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-35  120.5   0.0      5e-35  120.0   0.0    1.2  1  PF11016.3 Protein of unknown function (DUF2854)


Domain annotation for each model (and alignments):
>> PF11016.3  Protein of unknown function (DUF2854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0   3.7e-39     5e-35       3     145 ..      87     236 ..      85     238 .. 0.88

  Alignments for each domain:
  == domain 1    score: 120.0 bits;  conditional E-value: 3.7e-39
    PF11016.3   3 fvaYft..dganlsllglfYgvpllliGlaLkaaElkPvavsvt..tsaellalrekqateilkqllkdvtryrYgqkahLeesLkklklsldeeeaPelkeieeeeveg.ryglvleFespavslekweek..qeklkrffgkgleaei 145
                  f+ Yf    ga ls lg++Yg+p+lliG+aL++aEl+Pv+ +    +++ l++l e+qate+lk++++dvtr rYg++ahL+++ k+l+l ++++  P+lk ++  + e+ + +  + F sp  ++++w ++   +k ++ffg++++a++
  MMETSP0890-20130614|38332_1  87 FAEYFGsqGGAGLSSLGFIYGIPILLIGFALQYAELEPVSIEYLgdSEEVLEKLWESQATETLKKVRQDVTRHRYGDEAHLDTTVKALGLVPSQKPYPQLKYLQVSKSEAqNLTFSMVFSSPDTPFNDWADErrIKKYETFFGPDVQANV 236
                  56788766899*****************************987621445578899***********************************9999**********9887751679***************7642279***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 843.39
//
Query:       MMETSP0890-20130614|38347_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-08   33.1   0.0    3.8e-08   32.8   0.0    1.2  1  PF00650.15 CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   2.8e-12   3.8e-08      37     159 .]     101     218 ..      43     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 2.8e-12
   PF00650.15  37 eelvrllllvlerllklleedgqiegvtvviDmkglslskmlwkpisllkkilkilqdnyP.erlkkilivnaPklfkvafklvkpfldektreKikfvspsntpatlekyidpeqlpkelGGt 159
                  e++   +++++er+l  ++   +++++  +iD++ +s ++ ++k +++    ++++ ++yP    +  ++v  P++++ ++k+ kp+ +++t ++++fv++    +   ++i  ++lp  +GG+
  MMETSP0890-20130614|38347_1 101 EQIRAQTIYLQERILARAHS-INEAAAMTIIDTRATS-FRAPDKALRYG--GINVIDEYYPwANSGSTVFVALPPFIRQFIKMTKPLFPKETYDRFNFVND--FHELAPTFISSSNLPRRWGGQ 218
                  35555678999999987777.9999************.55666666666..5999******66799*********************************55..556799**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:01.04
# Mc/sec: 546.09
//
Query:       MMETSP0890-20130614|38349_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-06   25.3   0.2    7.1e-06   24.9   0.1    1.3  1  PF02416.11 mttA/Hcf106 family
  ------ inclusion threshold ------
      0.052   13.7   0.2      0.082   13.1   0.1    1.3  1  PF12732.2  YtxH-like protein


Domain annotation for each model (and alignments):
>> PF02416.11  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1     1e-09   7.1e-06       1      46 [.      50      95 ..      50     119 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1e-09
                 ------HHHHHHHHHH----STTT-------HHHHHHHHHHHHH-- CS
   PF02416.11  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleee 46
                 lg+pe+++Il +a  + Gp+kL  +a+ LGk   e k   ke  e 
  MMETSP0890-20130614|38349_1 50 LGVPEIAVILGIAGFVLGPEKLTSMAKDLGKVAGELKDVPKEFAEG 95
                 699****************************999999888888776 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.2e-05     0.082      14      60 ..      61     108 ..      55     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
    PF12732.2  14 aaalLlAPksGketReelkkkaddlkekaqelltearekvkekaes.l 60 
                  +a+  l P++   + ++l+k a +lk+ ++e +++++e+  e+ae  +
  MMETSP0890-20130614|38349_1  61 IAGFVLGPEKLTSMAKDLGKVAGELKDVPKEFAEGMKETSGEEAEVpA 108
                  667777788888899***********************9988888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 371.74
//
Query:       MMETSP0890-20130614|38353_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.09   12.4   0.5       0.32   10.6   0.1    1.9  2  PF00540.13 gag gene protein p17 (matrix protein)


Domain annotation for each model (and alignments):
>> PF00540.13  gag gene protein p17 (matrix protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.3e-05      0.32       8      46 ..      36      74 ..      29      88 .. 0.89
   2 ?   -0.6   0.0     0.066   9.1e+02      95     116 ..     127     148 ..     104     170 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.3e-05
   PF00540.13  8 sggkldkfekirlrpgGkkkyklkhlvwasrelerfavd 46
                 ++ +  kfe+ r + +Gk+k ++k  +w    le f  d
  MMETSP0890-20130614|38353_1 36 TRSQRRKFEEARRKTDGKRKNEIKRDLWKLSSLETFEFD 74
                 778889****************************99876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.066
   PF00540.13  95 dtkealekvkreqnkskkktev 116
                  d  +  ++ kr+++ ++ ++  
  MMETSP0890-20130614|38353_1 127 DNSDETKRTKRKRGANNDESGL 148
                  2222223333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1001  (0.0732153); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.44s 00:00:00.99 Elapsed: 00:00:01.10
# Mc/sec: 531.56
//
Query:       MMETSP0890-20130614|38356_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1266  (0.092598); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:01.00
# Mc/sec: 896.24
//
Query:       MMETSP0890-20130614|38368_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-12   47.8   6.3    7.9e-12   45.3   1.5    3.3  3  PF01399.22 PCI domain


Domain annotation for each model (and alignments):
>> PF01399.22  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.017   2.3e+02      38      62 ..     147     171 ..      82     219 .. 0.81
   2 ?    0.6   0.1     0.046   6.2e+02       5      26 ..     159     193 ..     155     242 .. 0.57
   3 !   45.3   1.5   5.8e-16   7.9e-12      37     103 ..     356     432 ..     285     434 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.017
                  ------HHHHHHHHHHHHHS-SEE- CS
   PF01399.22  38 llesLekkvrerllrqvskiyssis 62 
                  +  +Le+  ++r+l q+++++++i+
  MMETSP0890-20130614|38368_1 147 MYCELERAKITRTLAQLYESQNNID 171
                  5667778888888888888888886 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.046
                  XXXXXXXXXX.XXXXXXXXXXX............. CS
   PF01399.22   5 dllkalrsgn.lsgfseelkdl............e 26 
                   l + ++s+n ++++s e+++             +
  MMETSP0890-20130614|38368_1 159 TLAQLYESQNnIDAASDEMQKVnaetygslskreK 193
                  57777788888888888888875555444433330 PP

  == domain 3    score: 45.3 bits;  conditional E-value: 5.8e-16
                  X..........------HHHHHHHHHHHHHS-SEE-TTT----SSS-HHHHHHHHHHHHH-------B-S----EE- CS
   PF01399.22  37 q..........llesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIadgelrakidqpsgivvf 103
                              ++ L+ ++ ++++r ++k+y++i++ rla+ll+l+ +e+Ek ++ ++++  l++kid+p  i +f
  MMETSP0890-20130614|38368_1 356 LsrhgdqiknhWIKTLHTRIVQHNIRVIAKYYEQITMPRLAQLLKLDLNETEKQISHMVSHAGLYCKIDRPAAIANF 432
                  044444455557899*******************************************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       816  (0.059684); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.79
# Mc/sec: 1431.75
//
Query:       MMETSP0890-20130614|38372_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-08   32.7   3.6     0.0078   15.1   3.5    3.0  2  PF09766.4 Fms-interacting protein


Domain annotation for each model (and alignments):
>> PF09766.4  Fms-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.5   5.7e-07    0.0078      85     186 ..      44     170 ..       1     187 [. 0.83
   2 !   12.5   0.0   3.7e-06     0.051     272     351 ..     201     281 ..     176     284 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.7e-07
    PF09766.4  85 kldehelmlaRLewEleqRkelleklkklkkekeklqqdiekkkefLsslepkLkalkkavepvqealel.....pfekkekqqe....................larlLPqPLYvLYaqlkaykea 186
                  ++ eh  +l  L+ El +R +++++l    ++ ++     e  k     l+ +L+al++ +ep+  +l l     p+e   ++++                     +   P+PLY+LY ql+a    
  MMETSP0890-20130614|38372_1  44 HDTEHTTRLDALNLELSERMSKAQTLASARQDLQERMARLERLKDAVRDLPVRLEALRRIAEPLASTLALvdgpvPMEILPTTNHdqapshkhqltvikkrkrldDIHTVPTPLYLLYRQLEAAADT 170
                  5789999**********************************************************9986533322333333333344678899**********999***************998655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.7e-06
    PF09766.4 272 sLefeYltk.lnivtvkpelsddeea.....seklLsnLfpgDtGletPnqanklqlekvgidlnkldsyvse.lGrPYkWvQeLaG 351
                  +++f+Y+++  ++++v + +    ++     +   Ls Lf+gD+G+++P  +++  l ++        s  s+  Gr + W+Q LaG
  MMETSP0890-20130614|38372_1 201 VVKFYYFPSpADCIIVGVFDLAATNDrsefeASLDLSLLFAGDDGKQLPAGVSHRLLISNAD------SQKSTfPGRAFEWAQWLAG 281
                  56677766534555555433332222333433445999***********7666654444333......22223369**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       636  (0.0465184); expected 273.4 (0.02)
Passed bias filter:                      472  (0.0345231); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:01.00
# Mc/sec: 1205.37
//
Query:       MMETSP0890-20130614|38383_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-05   22.2   3.2    0.00015   21.3   2.2    1.5  1  PF08790.6  LYAR-type C2HC zinc finger
  ------ inclusion threshold ------
       0.49   10.7  18.1        1.3    9.4  12.6    1.6  1  PF05177.7  RCSD region
          2    8.1   9.8        2.7    7.7   6.8    1.3  1  PF06217.7  GAGA binding protein-like family


Domain annotation for each model (and alignments):
>> PF08790.6  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   2.2   3.2e-08   0.00015      14      28 .]       2      16 ..       1      16 [. 0.96

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.2e-08
    PF08790.6 14 sykaHtsCItEaEKY 28
                 sykaH+ CI+E+EKY
  MMETSP0890-20130614|38383_1  2 SYKAHSTCISEKEKY 16
                 8************** PP

>> PF05177.7  RCSD region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.6   0.00029       1.3       8      84 ..      93     167 ..      91     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00029
    PF05177.7   8 kEksPlrrsesriEkteedratEEakspekkekspekvdekpksptkkeksPek.satEevksPtkkekspekvEekp 84 
                  +E sPl+ +++++E t++d   E  +s  kk+ks  + d+++k ++k +++ e  s++ + k  +kk+k+ e+ E+k 
  MMETSP0890-20130614|38383_1  93 RESSPLVPTQTQTEVTVVDVPEE--RSKRKKRKSQ-DLDGREKKKKKTNNADESlSTAGDTKTVKKKRKTSEDEEKKI 167
                  689***************77655..5555688887.99**99999998888776366679**9999999999888764 PP

>> PF06217.7  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.8    0.0006       2.7      65     192 ..      27     160 ..       3     178 .. 0.44

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0006
    PF06217.7  65 qrdkalaernkalverdnkllalllvenspvgvqvlsetks..ihslqmlkh.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksi 192
                   +d +++  ++a+++ +++  +++        ++ +++ k+  ++ +++        + ++ + ++ +re++ l  +++++++++++  ++++kr++ k++    ++kkkkk+++  ++ +++++ +++k+++k+ 
  MMETSP0890-20130614|38383_1  27 AQDVWMDTVQAAVTDSNSAPNTVKRYLSRLLDYGNVPRNKNkfVNFVKN--SlnirdEIVATTLFDfIRESSPLVPTQTQTEVTVVDVPEERSKRKKRKSQDLDGREKKKKKTNNADESLSTAGDTKTVKKKRKTS 160
                  5678888877776666666555555444433444443332200111111..1111223333333444444444444444444444443333333333332222222222332333334444444334444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1676  (0.122586); expected 273.4 (0.02)
Passed bias filter:                      520  (0.0380339); expected 273.4 (0.02)
Passed Vit filter:                        63  (0.00460796); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.59
# Mc/sec: 727.03
//
Query:       MMETSP0890-20130614|38390_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.4   7.0      0.018   14.7   1.4    2.1  2  PF04859.7  Plant protein of unknown function (DUF641)
     0.0016   18.0   1.4       0.38   10.4   0.1    2.2  2  PF08461.5  Ribonuclease R winged-helix domain
     0.0037   15.6   1.2     0.0037   15.5   0.8    1.0  1  PF08385.7  Dynein heavy chain, N-terminal region 1
     0.0052   16.4   3.2     0.0058   16.2   2.2    1.0  1  PF12875.2  Protein of unknown function (DUF3826)
  ------ inclusion threshold ------
      0.011   14.3   0.8      0.011   14.2   0.6    1.1  1  PF10154.4  Uncharacterized conserved protein (DUF2362)
      0.012   14.7   0.1      0.013   14.7   0.1    1.1  1  PF13685.1  Iron-containing alcohol dehydrogenase
      0.033   13.4   4.9        0.2   10.8   3.4    1.9  1  PF05791.6  Bacillus haemolytic enterotoxin (HBL)
      0.068   11.8   7.6       0.99    8.0   0.6    1.9  2  PF02646.11 RmuC family
      0.071   13.2   3.4        2.4    8.3   0.2    2.3  2  PF08581.5  Tup N-terminal
       0.14   11.8   0.6       0.18   11.4   0.4    1.2  1  PF02787.14 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
       0.15   11.7   9.8      0.079   12.6   4.0    1.9  2  PF12718.2  Tropomyosin like
       0.16   11.5   8.2       0.17   11.4   5.7    1.0  1  PF03962.10 Mnd1 family
       0.17   11.8   2.3        6.2    6.8   0.5    2.1  2  PF13601.1  Winged helix DNA-binding domain
       0.22   11.2   1.1       0.26   11.0   0.8    1.1  1  PF07765.7  KIP1-like protein
       0.38   10.5   4.3        1.7    8.5   0.2    2.4  2  PF11544.3  Spindle pole body component Spc42p
       0.46   10.1   8.2       0.84    9.3   5.7    1.4  1  PF07321.7  Type III secretion protein YscO
       0.51    9.8  10.2       0.55    9.6   7.1    1.1  1  PF04156.9  IncA protein
       0.51   10.3   5.6       0.99    9.3   3.9    1.5  2  PF06780.6  Erp protein C-terminus
       0.55    8.4   5.7       0.58    8.3   4.0    1.0  1  PF03961.8  Protein of unknown function (DUF342)
       0.56    9.8   7.9       0.82    9.2   5.5    1.3  1  PF04740.7  LXG domain of WXG superfamily
       0.73    9.5   5.0        7.4    6.3   0.1    2.1  2  PF00631.17 GGL domain
       0.84    8.1   7.8        0.9    8.0   5.4    1.1  1  PF08317.6  Spc7 kinetochore protein
       0.87    8.4   4.2        2.1    7.2   2.9    1.7  1  PF07766.8  LETM1-like protein
       0.91    8.2   6.6       0.96    8.2   4.5    1.1  1  PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
        1.2    9.5   6.9        1.9    8.8   0.1    2.2  2  PF14357.1  Domain of unknown function (DUF4404)
        1.2    8.8  12.0        4.7    6.9   7.9    2.2  1  PF12329.3  TATA element modulatory factor 1 DNA binding
        1.2    8.8  11.4        2.7    7.7   1.6    2.6  3  PF02185.11 Hr1 repeat
        1.5    9.1   9.5        2.8    8.2   6.0    1.8  2  PF05400.8  Flagellar protein FliT
        1.7    7.9  11.2        4.2    6.6   2.9    2.1  2  PF06810.6  Phage minor structural protein GP20
        1.9    8.7   6.5        2.3    8.4   2.2    2.2  1  PF05531.7  Nucleopolyhedrovirus P10 protein
        1.9    6.9   5.6          2    6.8   3.9    1.0  1  PF02388.11 FemAB family
        2.8    7.8   5.5        2.3    8.1   0.9    2.1  2  PF04568.7  Mitochondrial ATPase inhibitor, IATP
        4.1    7.1   7.3         15    5.3   0.5    2.4  2  PF07716.10 Basic region leucine zipper
        4.1    6.7   8.1        7.3    5.9   5.6    1.4  1  PF05529.7  B-cell receptor-associated protein 31-like


Domain annotation for each model (and alignments):
>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.5   0.00041      0.16      94     124 ..       2      32 ..       1      34 [. 0.89
   2 !   14.7   1.4   4.4e-05     0.018      85     121 ..      30      66 ..      27      73 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00041
    PF04859.7  94 eivvkkLeaelrakdseieelrekleeakka 124
                  e+ +++L + l+++d++i  lr+klee+ ++
  MMETSP0890-20130614|38390_1   2 EAKAQDLTQLLQTRDEKISTLRNKLEESDQS 32 
                  678899*******************998876 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.4e-05
    PF04859.7  85 eqrsllktyeivvkkLeaelrakdseieelrekleea 121
                   q ++lk+ e+ +kk+ + l+ +d+ei  lr+kle+ 
  MMETSP0890-20130614|38390_1  30 DQSEALKAAETNAKKITQLLQSRDEEISTLRAKLEQY 66 
                  68899*****************************875 PP

>> PF08461.5  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1      0.01         4      16      44 ..       5      31 ..       3      39 .. 0.84
   2 !   10.4   0.1   0.00094      0.38      14      43 ..      40      67 ..      34      73 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.01
    PF08461.5 16 akeiaeeLkkrgydigeravRyhLralee 44
                 a+ + + L+ r+++i   ++R +L   ++
  MMETSP0890-20130614|38390_1  5 AQDLTQLLQTRDEKI--STLRNKLEESDQ 31
                 678999*********..899999876665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00094
    PF08461.5 14 igakeiaeeLkkrgydigeravRyhLrale 43
                 + ak+i + L+ r+++i   ++R +L   +
  MMETSP0890-20130614|38390_1 40 TNAKKITQLLQSRDEEI--STLRAKLEQYD 67
                 579**************..88999987665 PP

>> PF08385.7  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8   9.3e-06    0.0037     181     264 ..       3      82 ..       1      87 [] 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.3e-06
    PF08385.7 181 eklseclevlktwkeeykefkellrelakkrsekwdfqenkifkrldkflerlkdikefrktheqfnkliklefgglkgktlse 264
                  +k ++ +++l+t +e++  ++++l+  ++ +se ++  e +  k ++ +++r ++i  +r + eq+++     +g+ ++ t  +
  MMETSP0890-20130614|38390_1   3 AKAQDLTQLLQTRDEKISTLRNKLE--ESDQSEALKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQIDAVGAGKVQDLT--Q 82 
                  6789999*****************9..77777888899889999999*******************988877744444443..3 PP

>> PF12875.2  Protein of unknown function (DUF3826)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.2   1.4e-05    0.0058      37     103 ..       6      73 ..       2      82 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-05
    PF12875.2  37 rklndiyeerdakvkkiketteltkekkeealdreea..ekdaelyrlhkkfiakLslvLte.eqieavk 103
                  ++l+++ ++rd+k+ + +++  l+++ + eal+++e+  +k  +l +++ + i  L++ L++ +qi+av 
  MMETSP0890-20130614|38390_1   6 QDLTQLLQTRDEKISTLRNK--LEESDQSEALKAAETnaKKITQLLQSRDEEISTLRAKLEQyDQIDAVG 73 
                  6899999************9..677777777777665105567999**************8659***995 PP

>> PF10154.4  Uncharacterized conserved protein (DUF2362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.6   2.8e-05     0.011      89     138 ..      15      63 ..       6      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.8e-05
    PF10154.4  89 deekfaqvyhqlvhsealetllklernyaksiselieerdsevkklnelq 138
                   +ek +   ++l +s+ +++ lk  + +ak+i++l++ rd e+++l+ + 
  MMETSP0890-20130614|38390_1  15 RDEKISTLRNKLEESD-QSEALKAAETNAKKITQLLQSRDEEISTLRAKL 63 
                  6788888889976666.55667888888999**************99753 PP

>> PF13685.1  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.2e-05     0.013      36      92 ..      29      82 ..       4      86 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.2e-05
    PF13685.1 36 ekveeslkeagvevevleeleeeadleaveklvealrekdadlvvavGsGtinDlaK 92
                 ++ +e+lk+a+ +++ +++l  +   e++ +l ++l+  ++d + avG+G++ Dl+ 
  MMETSP0890-20130614|38390_1 29 SDQSEALKAAETNAKKITQLL-QSRDEEISTLRAKLE--QYDQIDAVGAGKVQDLTQ 82
                 455677888888888777554.445557778888885..9**************986 PP

>> PF05791.6  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.4   0.00051       0.2     126     176 ..      12      67 ..       2      71 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00051
    PF05791.6 126 vkqlleeLkafknklakd.....tksfksdvdeltsiLksqgadieklkkeieklq 176
                   +   e++ +++nkl++      +k+ +++++++t+ L+s + +i++l++++e++ 
  MMETSP0890-20130614|38390_1  12 LQTRDEKISTLRNKLEESdqseaLKAAETNAKKITQLLQSRDEEISTLRAKLEQYD 67 
                  45556789999999987512111334457889*********************996 PP

>> PF02646.11  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.9    0.0034       1.4       2      34 ..       6      38 ..       5      48 .. 0.83
   2 ?    8.0   0.6    0.0025      0.99      17      65 ..      40      85 ..      34      87 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0034
   PF02646.11  2 qrLeellkpvdekletlekrveesfekeaeele 34
                 q L++ll++ dek++tl++++ees ++ea + +
  MMETSP0890-20130614|38390_1  6 QDLTQLLQTRDEKISTLRNKLEESDQSEALKAA 38
                 88**********************999886554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0025
   PF02646.11 17 tlekrveesfekeaeelerLeeelkqlqelngeiqqlakevknLkkiLk 65
                 t  k++++  +++ ee  +L ++l+q ++++   +  a++v++L+++L+
  MMETSP0890-20130614|38390_1 40 TNAKKITQLLQSRDEEISTLRAKLEQYDQID---AVGAGKVQDLTQSLQ 85
                 6678999999999999999999999999999...889999999999997 PP

>> PF08581.5  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.034        14      57      78 ..      10      31 ..       4      32 .. 0.83
   2 ?    8.3   0.2    0.0059       2.4      56      77 ..      46      67 ..      36      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.034
    PF08581.5 57 kikekYeeeiarLkreLeargg 78
                 ++ ++ +e i  L+++Le+ ++
  MMETSP0890-20130614|38390_1 10 QLLQTRDEKISTLRNKLEESDQ 31
                 6778889***********9886 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0059
    PF08581.5 56 rkikekYeeeiarLkreLearg 77
                 +++ ++ +eei  L+++Le+ +
  MMETSP0890-20130614|38390_1 46 TQLLQSRDEEISTLRAKLEQYD 67
                 46678889***********977 PP

>> PF02787.14  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00045      0.18      51     108 ..      17      74 ..       5      85 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00045
   PF02787.14  51 eelkk..eellee..llreaKklGfsDaqiakllgvteeevrklrkelgikpvykrvDtcAa 108
                  e++++  ++l+ e  + + +K      ++i +ll++++ee+  lr +l    +y ++D ++a
  MMETSP0890-20130614|38390_1  17 EKISTlrNKLE-EsdQSEALKAAETNAKKITQLLQSRDEEISTLRAKL---EQYDQIDAVGA 74 
                  55555532222.224777888888999*******************95...68999998765 PP

>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.7     0.045        18     116     141 ..       4      29 ..       1      31 [. 0.54
   2 ?   12.6   4.0    0.0002     0.079       6      49 ..      25      68 ..      18      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.045
    PF12718.2 116 kvkaLEeerdeweekleelekklkea 141
                  k + L +  ++ +ek+ +l +kl+e+
  MMETSP0890-20130614|38390_1   4 KAQDLTQLLQTRDEKISTLRNKLEES 29 
                  45555555566666666666666555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.0002
    PF12718.2  6 klEaenaqekaeeleeklKeleqenekkEeeiksLqkKnqqlEe 49
                 klE+ +  e ++++e++ K+  q  ++++eei+ L  K++q+++
  MMETSP0890-20130614|38390_1 25 KLEESDQSEALKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQ 68
                 789999999********************************985 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.7   0.00042      0.17      69     147 ..       3      84 ..       1      87 [] 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00042
   PF03962.10  69 teleklkkeleelkqrikelqaeiekekkkreet...eereelleelkeleeelkklkkeleklakldpekveklkeeteva 147
                   +++ l++ l+  +++i++l++++e+  ++   +   ++ ++  + l++  ee++ l+++le++ + d     k+++ t+++
  MMETSP0890-20130614|38390_1   3 AKAQDLTQLLQTRDEKISTLRNKLEESDQSEALKaaeTNAKKITQLLQSRDEEISTLRAKLEQYDQIDAVGAGKVQDLTQSL 84 
                  57788888999999999999999988744443333534555566677788899***************99888888777665 PP

>> PF13601.1  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5     0.015       6.2      14      53 ..       2      41 ..       1      46 [. 0.85
   2 ?    6.4   0.1      0.02       8.2      13      45 ..      38      70 ..      33      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.015
    PF13601.1 14 eadfveLkealeatdGnLsvqlkkLekagyievekdfkgk 53
                 ea++++L ++l++ d ++s+  +kLe+ ++ e  k+ + +
  MMETSP0890-20130614|38390_1  2 EAKAQDLTQLLQTRDEKISTLRNKLEESDQSEALKAAETN 41
                 7999***********************9987777766655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.02
    PF13601.1 13 eeadfveLkealeatdGnLsvqlkkLekagyie 45
                  e +++++ ++l+  d  +s+  +kLe+ ++i+
  MMETSP0890-20130614|38390_1 38 AETNAKKITQLLQSRDEEISTLRAKLEQYDQID 70
                 5778999***********************997 PP

>> PF07765.7  KIP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00065      0.26      13      74 .]       5      67 ..       1      67 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00065
    PF07765.7 13 skWLeenLeeldekvkemlklieeeadsfa.krAemyykkrpelielveelyrayRaLaeryd 74
                 ++ L++ L+  dek+ ++ + +ee  +s a k Ae++ kk  +l++  +e   + Ra  e+yd
  MMETSP0890-20130614|38390_1  5 AQDLTQLLQTRDEKISTLRNKLEESDQSEAlKAAETNAKKITQLLQSRDEEISTLRAKLEQYD 67
                 566899999*********99999977776627789**************************98 PP

>> PF11544.3  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.6       0.3   1.2e+02      11      42 ..       9      41 ..       3      56 .. 0.48
   2 ?    8.5   0.2    0.0042       1.7      28      42 ..      56      70 ..      41      86 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHH CS
    PF11544.3 11 nkklrekqeEierL.nvlvgslRaKLiKYteln 42
                  + l++++e i  L n+l +s  +   K +e n
  MMETSP0890-20130614|38390_1  9 TQLLQTRDEKISTLrNKLEESDQSEALKAAETN 41
                 444445555554443344444444433433333 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHH CS
    PF11544.3 28 vgslRaKLiKYteln 42
                 + +lRaKL+ Y ++ 
  MMETSP0890-20130614|38390_1 56 ISTLRAKLEQYDQID 70
                 5689*******8875 PP

>> PF07321.7  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.7    0.0021      0.84      82     147 ..       4      71 ..       2      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0021
    PF07321.7  82 keaelesqlaeakqrleaererlrq..arkqlqearkaqekfaeLarqeqaeeqaqrerlEeleqeef 147
                  k ++l + l+   ++    r++l++  + ++l++a+ + +k+ +L + +++e + +r++lE+  q ++
  MMETSP0890-20130614|38390_1   4 KAQDLTQLLQTRDEKISTLRNKLEEsdQSEALKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQIDA 71 
                  566778888888888888888887622567899*****************************998765 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.1    0.0014      0.55      96     159 ..       4      83 ..       1      87 [] 0.58

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0014
    PF04156.9  96 eleqleerlaeleseledleedlellq..eelksleerlesleesikelakeirelr..............eeisdlkee 159
                  + ++l + l++  ++++ l++ le+    e+lk+ e++ +++++ +++  +ei+ lr               +++dl ++
  MMETSP0890-20130614|38390_1   4 KAQDLTQLLQTRDEKISTLRNKLEESDqsEALKAAETNAKKITQLLQSRDEEISTLRakleqydqidavgaGKVQDLTQS 83 
                  55666667777777777777776666667777888888888888888888888888833222222222222333333333 PP

>> PF06780.6  Erp protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.9    0.0025      0.99      61     120 ..       4      65 ..       1      71 [. 0.78
   2 ?    4.1   0.3       0.1        41      61      88 ..      41      68 ..      33      82 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0025
    PF06780.6  61 eeeelkkllkeLedardelRtklkegnkky.tkeneeklkekvkv.seikeDLeklkskLee 120
                  + ++l +ll+  ++  + lR kl+e++++   k  e + k++ ++ +   e++  l+ kLe+
  MMETSP0890-20130614|38390_1   4 KAQDLTQLLQTRDEKISTLRNKLEESDQSEaLKAAETNAKKITQLlQSRDEEISTLRAKLEQ 65 
                  568999********************999855666666777776514456788889988886 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.1
    PF06780.6 61 eeeelkkllkeLedardelRtklkegnk 88
                 + +++ +ll+  ++  + lR+kl++ ++
  MMETSP0890-20130614|38390_1 41 NAKKITQLLQSRDEEISTLRAKLEQYDQ 68
                 567788999999999999****998765 PP

>> PF03961.8  Protein of unknown function (DUF342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.0    0.0014      0.58     335     408 ..       4      66 ..       1      83 [. 0.69

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0014
    PF03961.8 335 klkeleeeleeleeeleklkkklkklpklkaegqlesekkeqleklletkeklkeeleeleaelkelkeelesk 408
                  k ++l ++l+   e++ +l++kl++ ++           +e l+ ++++ +k+++ l++ ++e+ +l ++le++
  MMETSP0890-20130614|38390_1   4 KAQDLTQLLQTRDEKISTLRNKLEESDQ-----------SEALKAAETNAKKITQLLQSRDEEISTLRAKLEQY 66 
                  5577888888888888888888777776...........46666777777777777777777777777777776 PP

>> PF04740.7  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.5     0.002      0.82     102     184 ..       6      86 ..       2      87 .] 0.91

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.002
    PF04740.7 102 nelkkalkkaeekteelkdeinsilasisdivslpklslsafkeqlqkakkkiedtlekLeefDqeltsllaelealikeieq 184
                  ++l++ l++  ek+++l +++++  +s  + ++  + + +++ + lq+ +++i++   kLe++Dq  +    ++++l +++++
  MMETSP0890-20130614|38390_1   6 QDLTQLLQTRDEKISTLRNKLEESDQS--EALKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQIDAVGAGKVQDLTQSLQS 86 
                  68999999999**********877666..999*********************************999999999999999986 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.2     0.055        22       3      35 ..       6      39 ..       4      40 .. 0.84
   2 ?    6.3   0.1     0.018       7.4       3      25 ..      43      65 ..      41      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.055
   PF00631.17  3 qrikqlklklkreieqLkkeLer.erikvSkack 35
                 q  +ql +++ ++i  L+++Le+ +   + ka++
  MMETSP0890-20130614|38390_1  6 QDLTQLLQTRDEKISTLRNKLEEsDQSEALKAAE 39
                 56789999**************966669988887 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.018
   PF00631.17  3 qrikqlklklkreieqLkkeLer 25
                 ++i+ql + + +ei  L+ +Le+
  MMETSP0890-20130614|38390_1 43 KKITQLLQSRDEEISTLRAKLEQ 65
                 6899****************997 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.4    0.0022       0.9     183     245 ..       6      69 ..       1      87 [] 0.36

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0022
    PF08317.6 183 rekkealkeelasLrqlkdeleecdsee.leklreeLssleekieekrkkleeleeelqelkkk 245
                  +++ + l+++ +++++l+++lee d++e l+++  + ++ ++ ++++ ++++ l+++l++ ++ 
  MMETSP0890-20130614|38390_1   6 QDLTQLLQTRDEKISTLRNKLEESDQSEaLKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQI 69 
                  3333333333333333333333333332122223333333333333333333333333333332 PP

>> PF07766.8  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.9    0.0052       2.1      96     143 ..       3      51 ..       1      85 [. 0.74

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0052
    PF07766.8  96 qkeeklkkllkvrkevakflqetleelalekkesiseeek.kfaaflkk 143
                   k ++l++ll++r e    l+++lee+ +++  + +e+++ k+ ++l+ 
  MMETSP0890-20130614|38390_1   3 AKAQDLTQLLQTRDEKISTLRNKLEESDQSEALKAAETNAkKITQLLQS 51 
                  578899*******************998877666444322255555553 PP

>> PF10186.4  UV radiation resistance protein and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.5    0.0024      0.96      71     140 ..       4      68 ..       1      84 [. 0.64

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0024
    PF10186.4  71 rieqirkrieqlkeeieqkrerieelkealaqrrsdle..asaqlekrraeqlaklqeeikrtksklnsles 140
                  + + + + +++  e+i+ +r+++ee         ++ +  a  +  k++++ l++  eei+ +++kl+++++
  MMETSP0890-20130614|38390_1   4 KAQDLTQLLQTRDEKISTLRNKLEE-------SDQSEAlkAAETNAKKITQLLQSRDEEISTLRAKLEQYDQ 68 
                  4444455555555555555555554.......3333333366677888888888888888888888887765 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.8      0.21        85       4      41 ..      17      52 ..      14      56 .. 0.65
   2 ?    8.8   0.1    0.0047       1.9       4      36 ..      54      86 ..      51      87 .] 0.91

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.21
    PF14357.1  4 elLekLheeLeqtdsldeetraeLkelrddieealeee 41
                 e++ +L+++Le+ d+ +e+ +a+ ++  ++i ++l++ 
  MMETSP0890-20130614|38390_1 17 EKISTLRNKLEESDQ-SEALKAA-ETNAKKITQLLQSR 52
                 678899999998777.4544444.45556677777763 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0047
    PF14357.1  4 elLekLheeLeqtdsldeetraeLkelrddiee 36
                 e++ +L+++Leq d++d   + ++++l + +++
  MMETSP0890-20130614|38390_1 54 EEISTLRAKLEQYDQIDAVGAGKVQDLTQSLQS 86
                 7899***********************999985 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.9     0.012       4.7       2      61 ..       7      68 ..       6      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.012
    PF12329.3  2 slekklkeKdeqIaqLmeEgekLskke..lkhnntikkLrkknkelekeieelkkkleklek 61
                 +l  +l+  de+I  L+ ++e+  ++e  ++ ++  kk ++ ++  ++ei++l +kle+ ++
  MMETSP0890-20130614|38390_1  7 DLTQLLQTRDEKISTLRNKLEESDQSEalKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQ 68
                 678899***************986666225778889**********************9876 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.8     0.015         6      35      59 ..       5      29 ..       2      34 .. 0.56
   2 ?    7.7   1.6    0.0067       2.7      23      61 ..      35      68 ..      30      76 .. 0.77
   3 ?   -1.5   0.0       4.9     2e+03      48      57 ..      76      85 ..      73      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.015
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11 35 lqeaesklreseqkielLkeqLekl 59
                 +q+ ++ l+  + ki++L+ +Le+ 
  MMETSP0890-20130614|38390_1  5 AQDLTQLLQTRDEKISTLRNKLEES 29
                 4555555555556666666666553 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0067
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11 23 mlraletdkksvlqeaesklreseqkielLkeqLeklqk 61
                 ++ a et+ k+    +++ l++ + +i++L+ +Le++ +
  MMETSP0890-20130614|38390_1 35 LKAA-ETNAKK----ITQLLQSRDEEISTLRAKLEQYDQ 68
                 3443.666555....888899999999999999999987 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 4.9
                 XXXXXXXXXX CS
   PF02185.11 48 kielLkeqLe 57
                 k++ L ++L+
  MMETSP0890-20130614|38390_1 76 KVQDLTQSLQ 85
                 7788888876 PP

>> PF05400.8  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.0    0.0071       2.8      11      70 ..       6      59 ..       1      69 [. 0.63
   2 ?    4.7   0.6     0.086        35      12      43 ..      44      72 ..      38      86 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0071
    PF05400.8 11 eelaaledereqlleklleadaelspeesekkrellrrilandaairellqprldeleke 70
                 ++l++l+++r++ +  l++    l   e++++ e+l+   +n ++i++llq r +e++ +
  MMETSP0890-20130614|38390_1  6 QDLTQLLQTRDEKISTLRN---KL---EESDQSEALKAAETNAKKITQLLQSRDEEISTL 59
                 7789999999999988887...22...333334444444566667777777776666654 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.086
    PF05400.8 12 elaaledereqlleklleadaelspeesekkr 43
                 ++++l++ r++ +  l++    l++ ++ ++ 
  MMETSP0890-20130614|38390_1 44 KITQLLQSRDEEISTLRA---KLEQYDQIDAV 72
                 456666666666666665...55555555554 PP

>> PF06810.6  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.3     0.021       8.5      27      54 ..       3      30 ..       1      35 [. 0.82
   2 ?    6.6   2.9     0.011       4.2      20      57 ..      33      70 ..      27      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.021
    PF06810.6 27 eeldslkeqlkerdkqiedLkkkvkdne 54
                 ++ ++l + l++rd++i+ L++k ++++
  MMETSP0890-20130614|38390_1  3 AKAQDLTQLLQTRDEKISTLRNKLEESD 30
                 577889999************9877665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.011
    PF06810.6 20 skldkaeeeldslkeqlkerdkqiedLkkkvkdneeLk 57
                 + l++ae++ +++ + l+ rd++i+ L++k ++ +++ 
  MMETSP0890-20130614|38390_1 33 EALKAAETNAKKITQLLQSRDEEISTLRAKLEQYDQID 70
                 55667788999999999********9999888777765 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.2    0.0056       2.3      29      66 ..      11      50 ..       2      58 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0056
    PF05531.7 29 dvqenlpdvtelnekLd..aqsaqLaeletkvenIqdiLn 66
                  +q+  ++++ l +kL+  +qs++L++ et+ ++I+++L 
  MMETSP0890-20130614|38390_1 11 LLQTRDEKISTLRNKLEesDQSEALKAAETNAKKITQLLQ 50
                 46777788999*****84469****************998 PP

>> PF02388.11  FemAB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.9    0.0051         2     245     305 ..       6      72 ..       1      79 [. 0.66

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0051
   PF02388.11 245 eeleekleklekklakleekleknp......kkknkleelekqlaslekeldeakeliakdgeevpl 305
                  ++l++ l++ ++k+++l++kle+++       +++  +++++ l+s ++e++ ++  ++++++  ++
  MMETSP0890-20130614|38390_1   6 QDLTQLLQTRDEKISTLRNKLEESDqsealkAAETNAKKITQLLQSRDEEISTLRAKLEQYDQIDAV 72 
                  4444445555555555555555555555597667777888889999999999999999999998444 PP

>> PF04568.7  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.9    0.0057       2.3      67      96 ..      12      39 ..       2      45 .. 0.83
   2 ?    2.1   0.2      0.42   1.7e+02      68      83 ..      50      65 ..      38      72 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0057
    PF04568.7 67 rkkekeqLakLkekleeeikhhkkeieele 96
                  + ++e+++ L++klee  + +++ ++  e
  MMETSP0890-20130614|38390_1 12 LQTRDEKISTLRNKLEE--SDQSEALKAAE 39
                 58899************..88888888766 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.42
    PF04568.7 68 kkekeqLakLkeklee 83
                 + ++e ++ L+ kle+
  MMETSP0890-20130614|38390_1 50 QSRDEEISTLRAKLEQ 65
                 4445555555555554 PP

>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.7     0.041        16      25      51 ..       3      29 ..       3      32 .. 0.90
   2 ?    5.3   0.5     0.038        15      30      53 ..      45      68 ..      39      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.041
   PF07716.10 25 akeeeleervkeLeeeNaqLrqkveqL 51
                 ak ++l + ++   e++++Lr+k+e+ 
  MMETSP0890-20130614|38390_1  3 AKAQDLTQLLQTRDEKISTLRNKLEES 29
                 5889*******************9976 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.038
   PF07716.10 30 leervkeLeeeNaqLrqkveqLek 53
                 + + +++  ee+++Lr+k+eq+ +
  MMETSP0890-20130614|38390_1 45 ITQLLQSRDEEISTLRAKLEQYDQ 68
                 567789999***********9875 PP

>> PF05529.7  B-cell receptor-associated protein 31-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.6     0.018       7.3     134     186 ..      10      66 ..       1      69 [. 0.66

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.018
    PF05529.7 134 ealkkqaesatkaakkl....keekekklkeeveklkkeleekekdlealkkqaegl 186
                  + l++  e+ +   +kl    ++e+ k ++++++k+ + l+++++++++l+ ++e+ 
  MMETSP0890-20130614|38390_1  10 QLLQTRDEKISTLRNKLeesdQSEALKAAETNAKKITQLLQSRDEEISTLRAKLEQY 66 
                  3333333333333333344435567788889999999****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1539  (0.112566); expected 273.4 (0.02)
Passed bias filter:                      946  (0.0691925); expected 273.4 (0.02)
Passed Vit filter:                       153  (0.0111908); expected 13.7 (0.001)
Passed Fwd filter:                        34  (0.00248683); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.59u 0.42s 00:00:01.01 Elapsed: 00:00:00.68
# Mc/sec: 306.59
//
Query:       MMETSP0890-20130614|38386_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   56.9   0.0    1.9e-15   56.2   0.0    1.3  1  PF06831.9 Formamidopyrimidine-DNA glycosylase H2TH domain
  ------ inclusion threshold ------
       0.12   12.3   2.7       0.24   11.3   1.9    1.5  1  PF11733.3 Non-capsid protein NP1


Domain annotation for each model (and alignments):
>> PF06831.9  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.8e-19   1.9e-15      14      88 ..       9      84 ..       2      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.8e-19
                 HHHHHHHCTTSBHHHHHTTTT.T-B----HHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF06831.9 14 efkerlakkkraiktlLLDqa.vvaGvGNiyadEvLFlagihPeklakslsekelellhkaikevlekaievkkes 88
                  f e+++ ++++ik++LLDq+  ++G+GN++ad +L +a+ihP+ +a+ + +k++++l +a++e+++ a  +++++
  MMETSP0890-20130614|38386_1  9 VFVEYFKTRTTPIKAILLDQKaCISGIGNWLADDILCQAQIHPASPANAIPNKSIAMLRQALIEIVTTACAADARA 84
                 68899999************7379******************************************9998766655 PP

>> PF11733.3  Non-capsid protein NP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.9   3.5e-05      0.24      28      91 ..     136     199 ..     125     204 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.5e-05
    PF11733.3  28 WqtthhrsrsrsPirasGergsGsyrqeepikhlssstasktsdkvlktrestsgkktketipf 91 
                     t+ +++ rs +    e  +  +++ +  ++ s++ta +t dk l      s+k+ ++t p+
  MMETSP0890-20130614|38386_1 136 ETKTKTKAKKRSCLFDVEENDFDDHHSPQQEQNSSATTARRTDDKSLLFISAPSTKRPRRTSPH 199
                  45688999*******************99999****************9999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.63
# Mc/sec: 779.77
//
Query:       MMETSP0890-20130614|38391_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.5e-145  483.7   0.1   2.8e-145  483.5   0.0    1.0  1  PF00162.14 Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PF00162.14  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  483.5   0.0  2.1e-149  2.8e-145      32     384 .]       2     352 ..       1     352 [. 0.99

  Alignments for each domain:
  == domain 1    score: 483.5 bits;  conditional E-value: 2.1e-149
                  HHHHHHHHHHHHHH---EEEEE------S..S--GGG-SHHHHHHHHHHHTS--EE-SS----HHHHHHHH-----EEE-S-GGG----T....T--HHHHHHHHHT-SEEEEE----TTS--TTTTGGGGGST------HHHHHHHHHHHHCT---SSEEEE---------HHHHHHHTTT-SEEE-----HHHHHHH-----------GGGHHHHHHHHH-------EEE--SEEEEESSSSTTS--EEEEGGG-----E-EE---HHHHHHHHHHTT-SEEEE------TTSGGG----HHHHHHHH--...--EEEE----HHHHHHH---CCCSSEE------HHHHH--- CS
   PF00162.14  32 RiraalpTikellekgakvvllshlgrpkgkgkedklsLkpvakeLsellgkeVkfvddvvgeeaeaavkklkegevllLeNlRfykeeeskeekedeelakklasladvyVnDaFgtaHrahaStvgvakvlkpsaaGflmekElealekalenperpvvavlGGakvsdklkvienllkkvdklligGgmantFlkakglevgkslveeelvetakellekakekgvklvlPvDvvvakefkkdaeskvvesdeipedvmilDiGpktielfakvikeaktvvwnGplGvfefeaFakGTkavakalaes...galsivGGgdtaaaveklgladkfshiStGGgAsLelLegk 384
                  Rira++pT+k+ll++ga+v ++shlgrpk+ g+edk+sL+pva+++se lg+eVk+++d++g+e+ ++v++l ege llLeN+Rfykeee    k+d++++++la+ +d++VnDaFgtaHrahaSt+gv+k+lkps+ G l++kEl++l+ a+++p rp++a++GG+kvs+k++v+e+l++k+dk++igGgm++tFlka+g ++g+slve++ +etake ++ a+ekgvkl+lP ++vva++f++da++++v+s+eip+++m+lD Gp+++e++++ ++++kt++wnGp+Gvfe+eaFakGT+a+++ la+    g+++i+GGgd++aavek+gla+k+shiStGGgAsLelLegk
  MMETSP0890-20130614|38391_1   2 RIRASVPTLKYLLDNGAAVTMCSHLGRPKD-GPEDKFSLAPVATRMSECLGVEVKMAPDCIGDEVGTMVSDLGEGEALLLENTRFYKEEE----KNDPKFVEELAKPFDLFVNDAFGTAHRAHASTEGVTKFLKPSVSGKLLAKELQYLAGAIDDPVRPLAAIVGGSKVSSKISVLESLINKCDKVIIGGGMVFTFLKAMGKSTGTSLVEDDYLETAKEAIALAEEKGVKLILPNEIVVADAFAADANTQIVSSEEIPDGWMGLDNGPAATEMIKEELADCKTIIWNGPMGVFEMEAFAKGTFAICECLADLtanGCITIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGK 352
                  9***************************96.***********************************************************....************************************************************************************************************************************************************************************************************************99999****************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.71
# Mc/sec: 1225.18
//
Query:       MMETSP0890-20130614|38395_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-11   43.5   1.2    1.7e-05   24.9   0.0    2.3  2  PF02373.17 JmjC domain, hydroxylase
    1.2e-05   24.8   0.3       0.12   11.7   0.0    2.2  2  PF13621.1  Cupin-like domain
  ------ inclusion threshold ------
      0.027   13.4   0.0      0.036   12.9   0.0    1.2  1  PF06560.6  Glucose-6-phosphate isomerase (GPI)


Domain annotation for each model (and alignments):
>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   5.1e-07    0.0023       2      40 ..       4      41 ..       3      48 .. 0.86
   2 !   24.9   0.0   3.7e-09   1.7e-05      81     114 .]      46      79 ..      40      79 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.1e-07
                 EEEE-TT-EE-CE--GGG-EEEEEEEEE-EEEEEEE-TT CS
   PF02373.17  2 lylgmpksttpwhiedqglySinylhfgapkvWyivpse 40
                 +y+g+++s+t+ h++  ++yS ++ ++ + k W + p++
  MMETSP0890-20130614|38395_1  4 CYIGPKGSRTSEHADVLSTYS-WSANIAGRKHWWLQPPN 41
                 8*******************9.88888888888887775 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3.7e-09
                  EEEEE----EEEE----EEEEEEEEEEEEEEEEE CS
   PF02373.17  81 yrfvqkpgefVfvfpgayHsvfnlgfniaeavnf 114
                  + + q p ++Vfv+++++Hsv n+ ++++++ n+
  MMETSP0890-20130614|38395_1  46 IFIDQGPRDVVFVPSDWIHSVSNIEDTCSINRNW 79 
                  6689***************************998 PP

>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.7e-05      0.12     135     174 ..       5      46 ..       4      53 .. 0.88
   2 !   11.3   0.0   3.5e-05      0.16     216     244 ..      54      79 ..      49      84 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.7e-05
    PF13621.1 135 WlGnsasssslHhDh..yeNlycvvsGrKrftLfppsdapkl 174
                  ++G+++s++s H D+     + + ++GrK+++L pp+ ++++
  MMETSP0890-20130614|38395_1   5 YIGPKGSRTSEHADVlsTYSWSANIAGRKHWWLQPPNGTTHI 46 
                  79*************6666899**************988876 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 3.5e-05
    PF13621.1 216 evLYlPalWfHeVsssseegvhiavnywy 244
                  +v+++P+ W H Vs+   e+ + ++n  +
  MMETSP0890-20130614|38395_1  54 DVVFVPSDWIHSVSNI--ED-TCSINRNW 79 
                  99************99..77.66666544 PP

>> PF06560.6  Glucose-6-phosphate isomerase (GPI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.9e-06     0.036      90     144 ..      29      80 ..       9     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.9e-06
    PF06560.6  90 lkGkalylLqkpegevvedvrvievkkgtvvivPPnygHvsiNigeepLvmanlv 144
                  ++G+  + Lq p+g      + i   +++vv+vP  ++H   Ni +   +  n+ 
  MMETSP0890-20130614|38395_1  29 IAGRKHWWLQPPNG---TTHIFIDQGPRDVVFVPSDWIHSVSNIEDTCSINRNWF 80 
                  67888899999999...78899******************99*999887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.90
# Mc/sec: 591.10
//
Query:       MMETSP0890-20130614|38394_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       495  (0.0362054); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.72
# Mc/sec: 872.01
//
Query:       MMETSP0890-20130614|38385_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-20   71.1   0.7    9.2e-20   71.1   0.5    2.2  2  PF01145.20 SPFH domain / Band 7 family
     0.0053   16.1   0.3     0.0053   16.1   0.2    2.8  3  PF08621.5  RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.5   1.3e-23   9.2e-20      23     174 ..       3     154 ..       1     167 [. 0.90
   2 ?   -4.0   3.8       1.5     1e+04     156     178 ..     185     206 ..     169     209 .. 0.63

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 1.3e-23
   PF01145.20  23 pGlhfklPfgekvtvvstrvqtldvsdesvtvptkDglnvtvdvtvryrv....sdakkliaavaqeeenlenllrrllesalrevlsqmtldeilsnrselaaelknelneqlqkygievvdvritdvdppp.evkqalakkqaaeaeaaeaeiar 174
                  +G+ +   fg+ v +++ +++++ +++   + +t++ ++v v+++v +++    + ++++++++ q +e+ ++ + r++es lr+++++mt+ e+++nr++l +++++++ + ++++g+ ++ v + d++++  ++ + ++ k + e  +  ae+ r
  MMETSP0890-20130614|38385_1   3 VGITLFRGFGQNVVTMPSTIHKVLFRA---DQVTSEMQGVIVQGFVMWQIyregDGPFRAYKNI-QSPEEGNENIARMAESILRAQVANMTIKEVIQNREQLRDKVRADMMSVIRGWGVWLETVEVFDIKVSSqSLFNDMQTKHRMETHR-AAEQIR 154
                  67788888*******************...**********************************.*****************************************************99999999999999987777788877777777.444443 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.5
   PF01145.20 156 alakkqaaeaeaaeaeiaraeae 178
                   +a++qa  +e+ ++e+  ae++
  MMETSP0890-20130614|38385_1 185 IFAAEQALKQEQ-QQEKLVAEQQ 206
                  355555555555.7777666665 PP

>> PF08621.5  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   7.8e-07    0.0053       6      40 ..      70     113 ..      69     114 .. 0.87
   2 ?   -3.8   0.2       1.3   8.9e+03      21      27 ..     195     201 ..     191     203 .. 0.62
   3 ?    0.2   0.1     0.077   5.2e+02       7      23 ..     214     229 ..     205     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.8e-07
    PF08621.5   6 eENaerLa.........qMspeEIeeereeLlerLDPsllefLr 40 
                   EN +r+a         +M++ E+ + re+L+ +    ++  +r
  MMETSP0890-20130614|38385_1  70 NENIARMAesilraqvaNMTIKEVIQNREQLRDKVRADMMSVIR 113
                  68999999999999999***************998888887775 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.3
    PF08621.5  21 eeereeL 27 
                  e+++e+L
  MMETSP0890-20130614|38385_1 195 EQQQEKL 201
                  4555555 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.077
    PF08621.5   7 ENaerLaqMspeEIeee 23 
                  EN + L+ M ++ I++e
  MMETSP0890-20130614|38385_1 214 ENDRTLK-MKKAAIQAE 229
                  7888885.999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1695  (0.123976); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.52s 00:00:01.10 Elapsed: 00:00:00.85
# Mc/sec: 907.80
//
Query:       MMETSP0890-20130614|38399_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   57.2   0.0    1.3e-14   54.0   0.0    2.5  3  PF01926.18 50S ribosome-binding GTPase
      2e-05   23.7   0.0    4.1e-05   22.7   0.0    1.5  1  PF02421.13 Ferrous iron transport protein B
      5e-05   23.0   0.1    0.00092   18.9   0.1    2.8  2  PF00350.18 Dynamin family
    0.00029   19.9   0.0    0.00057   18.9   0.0    1.5  1  PF04548.11 AIG1 family
    0.00059   18.9   0.0     0.0022   17.0   0.0    1.9  2  PF03193.11 Protein of unknown function, DUF258
      0.001   19.4   0.0      0.002   18.4   0.0    1.5  1  PF08477.8  Miro-like protein
  ------ inclusion threshold ------
      0.052   12.6   0.0        0.2   10.7   0.0    1.9  2  PF00025.16 ADP-ribosylation factor family
       0.17   10.9   0.0        0.4    9.7   0.0    1.6  2  PF09439.5  Signal recognition particle receptor beta subunit


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.7   1.2e+03      27      39 ..      83      95 ..      50     132 .. 0.64
   2 !   54.0   0.0   7.6e-18   1.3e-14       1      64 [.     173     237 ..     173     289 .. 0.79
   3 ?   -1.4   0.0       1.2   2.1e+03      48      56 ..     292     300 ..     255     323 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.7
                 ETS-TT-SSSESE CS
   PF01926.18 27 vsdypgtTrdite 39
                  + +pgtT ++  
  MMETSP0890-20130614|38399_1 83 DARIPGTTAHPDV 95
                 3455666666633 PP

  == domain 2    score: 54.0 bits;  conditional E-value: 7.6e-18
                  EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSE.SEEEEETTE..EEEEE---SSSHHHHHHH CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrdi.tenevkkek..iilvDtPGiiegasedke 64 
                  +++++G pNvGKS++in+L g+k+ak+++ +g+Tr   +++    ++  ++l+D PGii+ ++ d+ 
  MMETSP0890-20130614|38399_1 173 RCVVIGFPNVGKSSIINKLAGRKVAKTENRAGVTRALtWIRPR--DTcdLELLDSPGIIPAKHVDQT 237
                  589**********************************777552..323468********98777765 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.2
                  EEEE---SS CS
   PF01926.18  48 ilvDtPGii 56 
                  + +DtPG +
  MMETSP0890-20130614|38399_1 292 YEIDTPGYF 300
                  568999943 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.4e-08   4.1e-05       3      57 ..     174     228 ..     172     241 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.4e-08
                  EEEE--TT---HHHHHHH----.TB--------S--BB--EEETTEEEEEEE---- CS
   PF02421.13   3 valvGnpnvGKttlfnaltgak.qkvgNwpGvTVekkegklklkgkeveivDLPGi 57 
                  ++++G pnvGK++++n+l+g k  k+ N +GvT   +  + + +  ++e++D PGi
  MMETSP0890-20130614|38399_1 174 CVVIGFPNVGKSSIINKLAGRKvAKTENRAGVTRALTWIRPR-DTCDLELLDSPGI 228
                  789*****************9857999******988888888.8899999**9998 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       6.5   1.1e+04     120     133 ..      66      79 ..      58      84 .. 0.68
   2 !   18.9   0.1   5.4e-07   0.00092       2      43 ..     175     217 ..     174     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6.5
                  HHHHHHHSTTEEEE CS
   PF00350.18 120 elveeyikkadiil 133
                    ++ey+k+ di++
  MMETSP0890-20130614|38399_1  66 RELKEYLKRVDIVI 79 
                  44788888888876 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 5.4e-07
                  EEE--TT---HHHHHHH-----------.------EEEEEEE- CS
   PF00350.18   2 avvGsqSaGKSSllnaLlgedilprgpg.ptTrrplvlqlgee 43 
                  +v+G  + GKSS++n L g+++  +++   +Tr+++ ++ +++
  MMETSP0890-20130614|38399_1 175 VVIGFPNVGKSSIINKLAGRKVAKTENRaGVTRALTWIRPRDT 217
                  89999*****************99888879******9998665 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.3e-07   0.00057       2      80 ..     173     249 ..     172     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.3e-07
                  EEEEE-------TT---TTTTS--S-----------S-EEEEEEETTEEEEEEE--CGCCTTCHHCCHHHHHHHHHHHH CS
   PF04548.11   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrcllls 80 
                  + v++G   +GkS+ +N + g+k+ +++ + ++vt++ +   r +d ++++  D Pg++  ++ ++++      c  l 
  MMETSP0890-20130614|38399_1 173 RCVVIGFPNVGKSSIINKLAGRKVAKTE-NRAGVTRALTW-IRPRDTCDLELLDSPGIIPAKHVDQTAAARLAMCGDLG 249
                  6799************************.68999998865.567899**************999999888888887665 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-06    0.0022      15      65 ..     149     201 ..     143     243 .. 0.79
   2 ?   -1.7   0.0      0.77   1.3e+03      83     100 ..     285     302 ..     279     309 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.3e-06
                  EEEEECHHHTT-HHHHHHCTT..SBEEEE-------HHHHHHH--------S- CS
   PF03193.11  15 vlvlsvktkegleelaellkd..ktsvlvGqSGvGKSsLinallpeldlkvge 65 
                  v + s++++ + ++la+++k      v++G   vGKSs+in+l++++ +k+++
  MMETSP0890-20130614|38399_1 149 VALRSLTQQMNEKRLAKNIKPraARCVVIGFPNVGKSSIINKLAGRKVAKTEN 201
                  555667778888889999988446689******************98888764 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.77
                  EE-.---EEES----TS- CS
   PF03193.11  83 lklsegglliDtPGfrel 100
                  +kl+ + + iDtPG   +
  MMETSP0890-20130614|38399_1 285 YKLNLDEYEIDTPGYFMY 302
                  5667788889****7655 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06     0.002       1      29 [.     173     201 ..     173     245 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkkl 29 
                  ++vv+G ++vGKss++++l+g++  k + 
  MMETSP0890-20130614|38399_1 173 RCVVIGFPNVGKSSIINKLAGRKVAKTEN 201
                  89*******************99992222 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.69   1.2e+03      75     115 ..     122     165 ..     121     167 .. 0.67
   2 ?   10.7   0.0   0.00012       0.2      12      43 ..     169     200 ..     159     209 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.69
                  GGGGCTTECEEEEEEE....TT-CTTHHHHHHHHHHHHTSGGGTT CS
   PF00025.16  75 WknYfektdavifvvD....sadreRleeakeeLkalleeeelke 115
                  Wk Y++k   v f +D    s d  Rl+ a + L++ ++e++l++
  MMETSP0890-20130614|38399_1 122 WKLYTKKNPNV-FWMDarkgSGDLGRLRVALRSLTQQMNEKRLAK 165
                  88887776655.445622224566799999999999999888865 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00012
                  TSEEEEEEE--TT---HHHHHHHHHS-EEEE- CS
   PF00025.16  12 kkelrilllGLDnaGKtTilkklkleelvttv 43 
                   + +r++++G  n GK+ i++kl   ++++t 
  MMETSP0890-20130614|38399_1 169 PRAARCVVIGFPNVGKSSIINKLAGRKVAKTE 200
                  5889********************99998876 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.3   5.6e+03      71      92 ..      26      47 ..      21      52 .. 0.66
   2 ?    9.7   0.0   0.00024       0.4       5      58 ..     173     227 ..     169     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.3
                 HHHGGB---EEEEETTS-TT-- CS
    PF09439.5 71 kaksslkglvfvvDStidpkev 92
                 + k+s+   + vvD +idp + 
  MMETSP0890-20130614|38399_1 26 LLKRSMSNDLVVVDESIDPFRH 47
                 5566666667799999998555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00024
                  EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-...-----EEEE--- CS
    PF09439.5   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgkkltliDfPG 58 
                  + +++G  + GK s++++L   +v kt      + a + ++ ++   l+l+D PG
  MMETSP0890-20130614|38399_1 173 RCVVIGFPNVGKSSIINKLAGRKVAKTENRAgVTRALTWIRPRDTCDLELLDSPG 227
                  67899**********************9988455555555788888999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      420  (0.0307197); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.57s 00:00:01.18 Elapsed: 00:00:01.33
# Mc/sec: 765.75
//
Query:       MMETSP0890-20130614|38410_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.7   0.0     0.0023   18.0   0.0    1.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-07    0.0023     130     164 .]      56      98 ..      42      98 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-07
                  .SEEEEEEES........TTSSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 130 pNltvqfvfv........trgprvalrAtrdIpkGeEltidYg 164
                  pN +v  v +        +  pr+  +Atrd p++ El+++Yg
  MMETSP0890-20130614|38410_1  56 PNNNVALVQAdigkhedhNHAPRIFAVATRDLPANSELFYSYG 98 
                  7888888877889999999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:01.10
# Mc/sec: 453.13
//
Query:       MMETSP0890-20130614|38409_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.68
# Mc/sec: 451.08
//
Query:       MMETSP0890-20130614|38412_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0023   16.8   0.3     0.0032   16.4   0.2    1.1  1  PF01594.11 Domain of unknown function DUF20
  ------ inclusion threshold ------
      0.092   12.4   0.6         11    5.7   0.2    2.3  2  PF06279.6  Protein of unknown function (DUF1033)
       0.12   12.1   0.2        0.2   11.3   0.1    1.3  1  PF05915.7  Eukaryotic protein of unknown function (DUF872)


Domain annotation for each model (and alignments):
>> PF01594.11  Domain of unknown function DUF20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2     7e-07    0.0032      17     126 ..      82     186 ..      79     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7e-07
   PF01594.11  17 fistllvpllialvlayllnpvvkfLkkrgvkrslaillvlllllvllvlllvllvplliaqltqlvkslpqyidslqnllnelpesleelellikalesslskvlsnil 126
                  +i+++l++ +i + +  +l pv+ +   ++   s  +ll++ ++++++v++++  +p++ +q+++l+++ + ++++ ++   ++ ++ e l+    al   l k+ ++ +
  MMETSP0890-20130614|38412_1  82 LIQPMLLLCIIFGSVLLILGPVIHRQSDKKTAGSALVLLIFSSVVLFVVGSIAHSIPSIEDQVIDLINDDK-IVEQGKDKEINMAQEAEDLQ----ALTLDLVKQTAKQR 186
                  5677888888889999999***99999999999999********************************988.88888888888888888885....44444444444444 PP

>> PF06279.6  Protein of unknown function (DUF1033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2    0.0023        11      33      70 ..     185     222 ..     175     226 .. 0.79
   2 ?    4.5   0.0    0.0055        25      47      74 ..     284     311 ..     270     319 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0023
    PF06279.6  33 yeealkaykklieklkeeyeeykskkdlltafwneedk 70 
                   ++a+k  ++ +   ++e+ + + k++++ +fwn e+ 
  MMETSP0890-20130614|38412_1 185 QRAAVKNMHTAFIVREKEFIRLRYKSKMMNIFWNAEQD 222
                  556677777777778899999*************9876 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0055
    PF06279.6  47 lkeeyeeykskkdlltafwneedkewCe 74 
                  ++++++ +++ kd+   fw + + ++C+
  MMETSP0890-20130614|38412_1 284 INKRFQVHSTPKDNSIPFWSQREWSYCQ 311
                  578999999******************7 PP

>> PF05915.7  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.5e-05       0.2      33      91 ..      68     132 ..      44     140 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.5e-05
    PF05915.7  33 C...hPlvkknvkvillavlLl..llGllllvlgvliaanpvegdgsqaivllv.lGillfiPgf 91 
                  C   +P+   n    +  +lLl  ++G +ll+lg +i  +  ++ + +a+vll+   ++lf+ g+
  MMETSP0890-20130614|38412_1  68 CiarNPRTPMNELHLIQPMLLLciIFGSVLLILGPVIHRQSDKKTAGSALVLLIfSSVVLFVVGS 132
                  24445555566666676676653378**************9997777777766515677787665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       710  (0.051931); expected 273.4 (0.02)
Passed bias filter:                      490  (0.0358397); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.87
# Mc/sec: 958.54
//
Query:       MMETSP0890-20130614|38415_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   16.8   0.2     0.0018   16.5   0.2    1.0  1  PF04637.7 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)


Domain annotation for each model (and alignments):
>> PF04637.7  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.3e-07    0.0018     364     455 ..      69     160 ..      62     187 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.3e-07
    PF04637.7 364 knplgnsdlFrvPenassylrrrlvertitqdiivkaedgeitvehyelqsvyslvlegaarqtgltpeqleeylkeaplgaevedgleeea 455
                   + lg++ ++r P+n+++   rrl+  + t + ++     +  + + + +   +  +++ a+   l  +++++y + + ++ e +++ e+ a
  MMETSP0890-20130614|38415_1  69 TQHLGDDPFLRLPNNDKTTYARRLRASSQTSKRTTLTGLDANDTSNLPFDDFDETGMSASASASSLLSQRRKHYHDDTNQPSEAAQVEEQRA 160
                  6789**********99887777755555555555555555568899*****************************99999999544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.35s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 802.99
//
Query:       MMETSP0890-20130614|38423_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-22   77.0  11.4    7.1e-16   57.4   1.4    3.4  4  PF13414.1  TPR repeat
    3.3e-14   51.6   3.3    1.4e-06   27.4   0.1    3.5  3  PF00515.23 Tetratricopeptide repeat
    1.2e-13   49.7   4.8    0.00017   21.1   0.0    4.1  4  PF07719.12 Tetratricopeptide repeat
    2.9e-06   26.5   0.5       0.18   11.5   0.0    3.7  3  PF13181.1  Tetratricopeptide repeat
    2.3e-05   24.8   4.5    0.00083   19.8   0.1    2.9  4  PF13432.1  Tetratricopeptide repeat
    3.1e-05   23.6   5.7     0.0083   15.9   1.6    2.6  2  PF13424.1  Tetratricopeptide repeat
    3.2e-05   23.5   7.8     0.0066   16.1   0.1    2.8  3  PF13371.1  Tetratricopeptide repeat
    0.00031   20.2   2.2       0.45   10.3   0.0    3.7  3  PF13176.1  Tetratricopeptide repeat
    0.00088   19.1   4.1       0.55   10.4   0.0    4.0  4  PF13431.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.043   14.3   7.7         19    6.1   0.1    3.6  3  PF13428.1  Tetratricopeptide repeat
       0.12   12.7   2.9         84    3.8   0.0    3.9  4  PF13174.1  Tetratricopeptide repeat
       0.16   10.4   3.3       0.46    8.9   0.0    2.2  2  PF09670.5  CRISPR-associated protein (Cas_Cas02710)


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.094   1.1e+02       3      34 ..      82     113 ..      79     119 .. 0.86
   2 !   57.4   1.4   6.3e-19   7.1e-16       4      69 .]     150     214 ..     146     214 .. 0.95
   3 !   32.0   1.5   5.4e-11   6.2e-08      11      69 .]     191     248 ..     191     248 .. 0.96
   4 ?   -2.9   0.0       4.4     5e+03      53      69 .]     256     272 ..     250     272 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.094
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldp 34 
                  A+  + +G+  ++  + deA+++ +  ++++p
  MMETSP0890-20130614|38423_1  82 AQHTYDKGYGKWESFNVDEALAEIDDTTKINP 113
                  55668899999*************99999998 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 6.3e-19
    PF13414.1   4 ealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +a +elGn lf +gdy++Ai+ay+ +l l + n  +++n+A aylkl  +++ A  d++ Al+ldP
  MMETSP0890-20130614|38423_1 150 LAQRELGNDLFAKGDYQGAIRAYTLCLGLKKRNVLALSNRAMAYLKLK-EFHNAEIDCTSALNLDP 214
                  6899*******************************************7.7***************9 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 5.4e-11
    PF13414.1  11 nalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAleldP 69 
                  +a++k++++++A+  ++ Al ldpn+ + + ++A a   lgk  ++Al d e+Al++ P
  MMETSP0890-20130614|38423_1 191 MAYLKLKEFHNAEIDCTSALNLDPNHLKSLQRRASARDALGK-HRAALLDMERALAIQP 248
                  579**************************************7.59***********998 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 4.4
    PF13414.1  53 dyeeAledyekAleldP 69 
                  +  + +++++ +++ +P
  MMETSP0890-20130614|38423_1 256 QQASIRRHLTSCIKNAP 272
                  33567889999998877 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   4.4e-05      0.05       6      31 ..     154     179 ..     150     182 .. 0.87
   2 !   27.4   0.1   1.3e-09   1.4e-06       2      34 .]     184     216 ..     183     216 .. 0.96
   3 !   10.1   0.0   0.00038      0.43       4      33 ..     220     249 ..     218     250 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-05
                  HHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekALeln 31 
                   lGn ++ +g+y+ A+ +y  +L l 
  MMETSP0890-20130614|38423_1 154 ELGNDLFAKGDYQGAIRAYTLCLGLK 179
                  59*****************9998775 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 1.3e-09
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                   al n+++aylkl+++  A+ ++  AL l+Pn+
  MMETSP0890-20130614|38423_1 184 LALSNRAMAYLKLKEFHNAEIDCTSALNLDPNH 216
                  599****************************97 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00038
                  HHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekALelnPn 33 
                  l +++ a   lgk+  Al + e+AL ++P+
  MMETSP0890-20130614|38423_1 220 LQRRASARDALGKHRAALLDMERALAIQPS 249
                  67899999*********************7 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2   1.4e+03      12      32 ..      93     113 ..      86     113 .. 0.73
   2 !   15.7   0.2   7.6e-06    0.0087       3      29 ..     151     177 ..     150     182 .. 0.85
   3 !   21.1   0.0   1.5e-07   0.00017       2      34 .]     184     216 ..     183     216 .. 0.96
   4 !   11.6   0.0   0.00016      0.18       4      33 ..     220     249 ..     218     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.2
                  HHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12  12 yklgdyeeAleafekAleldP 32 
                  +++ + +eAl+  +   +++P
  MMETSP0890-20130614|38423_1  93 WESFNVDEALAEIDDTTKINP 113
                  6677999**998887777776 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.6e-06
                  HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAle 29 
                  a  +lG+ ++++gdy+ A++a+  +l 
  MMETSP0890-20130614|38423_1 151 AQRELGNDLFAKGDYQGAIRAYTLCLG 177
                  5678******************98875 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 1.5e-07
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                   al n+++ay+kl+++  A+ ++  Al ldPn+
  MMETSP0890-20130614|38423_1 184 LALSNRAMAYLKLKEFHNAEIDCTSALNLDPNH 216
                  689****************************97 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 0.00016
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                  l +++ a  +lg++  Al ++e+Al+++P 
  MMETSP0890-20130614|38423_1 220 LQRRASARDALGKHRAALLDMERALAIQPS 249
                  77999999********************96 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0041       4.7      12      34 .]     160     182 ..     153     183 .. 0.90
   2 !   11.5   0.0   0.00016      0.18       4      34 .]     186     216 ..     184     216 .. 0.91
   3 ?    4.0   0.0     0.039        45       3      32 ..     219     248 ..     217     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0041
                  HHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1  12 rqlGdydkAkeylekalelkprn 34 
                  + +Gdy  A+ ++  +l lk+rn
  MMETSP0890-20130614|38423_1 160 FAKGDYQGAIRAYTLCLGLKKRN 182
                  679*****************965 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00016
                  TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeylekalelkprn 34 
                  + n++++Y++l+++++A+     al l+p++
  MMETSP0890-20130614|38423_1 186 LSNRAMAYLKLKEFHNAEIDCTSALNLDPNH 216
                  6699*****************9999999975 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.039
                  -TTT---HHHHTT-HHHHHHHHH---HHHH CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkp 32 
                  ++ +++++   lG++ +A+  +e+al + p
  MMETSP0890-20130614|38423_1 219 SLQRRASARDALGKHRAALLDMERALAIQP 248
                  57788888899***************9988 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.9   4.4e+03      12      27 ..      97     112 ..      86     117 .. 0.73
   2 !   19.8   0.1   7.3e-07   0.00083       2      63 ..     154     215 ..     153     216 .. 0.95
   3 !   14.0   1.7   4.7e-05     0.053       3      63 ..     189     249 ..     188     252 .. 0.93
   4 ?    2.7   1.0      0.17   1.9e+02       3      41 ..     223     261 ..     222     264 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 3.9
    PF13432.1  12 dydeAlaaleaalala 27 
                  ++deAla +++  + +
  MMETSP0890-20130614|38423_1  97 NVDEALAEIDDTTKIN 112
                  7888988888776666 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 7.3e-07
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  +l+++l++ Gdy+ A++a+   l l  +++ al ++a+a+l+l+++  A++   +al l+P+
  MMETSP0890-20130614|38423_1 154 ELGNDLFAKGDYQGAIRAYTLCLGLKKRNVLALSNRAMAYLKLKEFHNAEIDCTSALNLDPN 215
                  699*******************************************9999999999999987 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 4.7e-05
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  +A+a+l+++++  A+     al l+P +   l+++a a  +lg++ +A+   ++ala+ P+
  MMETSP0890-20130614|38423_1 189 RAMAYLKLKEFHNAEIDCTSALNLDPNHLKSLQRRASARDALGKHRAALLDMERALAIQPS 249
                  89***********************************************777777788886 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.17
    PF13432.1   3 lArallraGdydeAlaaleaalalaPeaaeallllaeal 41 
                  +A a+ ++G+ ++Al   e+ala +P     l+  a + 
  MMETSP0890-20130614|38423_1 223 RASARDALGKHRAALLDMERALAIQPSSKALLQQQASIR 261
                  567777889999999999999999998777776666655 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0016       1.8      48      74 ..     151     177 ..     129     181 .. 0.65
   2 !   15.9   1.6   7.3e-06    0.0083       7      76 ..     185     247 ..     182     249 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0016
    PF13424.1  48 alnnlanlylalgdydeAleylekAle 74 
                  a ++l+n + a+gdy+ A++ +  +l 
  MMETSP0890-20130614|38423_1 151 AQRELGNDLFAKGDYQGAIRAYTLCLG 177
                  366667777777777777766665554 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 7.3e-06
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +l+n a ++++l++++ A+  +  al+l     ++h   +++l   a +  alg++ +Al   e+Al+i 
  MMETSP0890-20130614|38423_1 185 ALSNRAMAYLKLKEFHNAEIDCTSALNLD----PNH---LKSLQRRASARDALGKHRAALLDMERALAIQ 247
                  589***********************993....455...89***************************97 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.9   3.3e+03      60      70 ..      30      42 ..      14      45 .. 0.53
   2 !   16.1   0.1   5.8e-06    0.0066       6      64 ..     160     218 ..     155     224 .. 0.91
   3 !   15.8   1.2   7.4e-06    0.0085      20      70 ..     208     258 ..     204     261 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.9
    PF13371.1 60 p..dapdaelira 70
                 +  +++d+e  r+
  MMETSP0890-20130614|38423_1 30 KdiERRDREIQRQ 42
                 2335666666655 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 5.8e-06
    PF13371.1   6 lreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapd 64 
                  +  +d++ A++++ + l l+   +  +  r++++ +l +++ A  d + +l+l+p++  
  MMETSP0890-20130614|38423_1 160 FAKGDYQGAIRAYTLCLGLKKRNVLALSNRAMAYLKLKEFHNAEIDCTSALNLDPNHLK 218
                  6789***************************************************8765 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 7.4e-06
    PF13371.1  20 rllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcpdapdaelira 70 
                  + l l+P+++  +  r+ ++  lg ++aA+ d+e++l+  p+  +  + +a
  MMETSP0890-20130614|38423_1 208 SALNLDPNHLKSLQRRASARDALGKHRAALLDMERALAIQPSSKALLQQQA 258
                  5689*************************************9988877766 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00039      0.45       5      30 ..     155     180 ..     153     182 .. 0.85
   2 ?    4.7   0.0     0.024        28       1      34 [.     185     216 ..     185     218 .. 0.86
   3 ?    2.8   0.1     0.098   1.1e+02       2      28 ..     220     246 ..     219     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00039
    PF13176.1   5 LarlysrlgdyekAielyeraLaltk 30 
                  L++  ++ gdy+ Ai++y+ +L+l+k
  MMETSP0890-20130614|38423_1 155 LGNDLFAKGDYQGAIRAYTLCLGLKK 180
                  67777889************999876 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.024
    PF13176.1   1 allnLarlysrlgdyekAielyeraLaltkdpld 34 
                  al+n a +y +l ++ +A+  ++   al  dp++
  MMETSP0890-20130614|38423_1 185 ALSNRAMAYLKLKEFHNAEIDCTS--ALNLDPNH 216
                  799***************999999..77777765 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.098
    PF13176.1   2 llnLarlysrlgdyekAielyeraLal 28 
                  l + a++  +lg+++ A+   eraLa+
  MMETSP0890-20130614|38423_1 220 LQRRASARDALGKHRAALLDMERALAI 246
                  6677999999*******9999995554 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.85   9.7e+02      18      33 ..     154     169 ..     145     170 .. 0.73
   2 ?    5.8   0.1     0.015        17       2      32 ..     172     202 ..     171     204 .. 0.85
   3 !   10.4   0.0   0.00048      0.55       3      32 ..     207     236 ..     205     237 .. 0.92
   4 ?    0.2   0.0      0.91     1e+03       3      20 ..     241     258 ..     240     264 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.85
    PF13431.1  18 nLAelllnnGdleeAe 33 
                  +L++ l+++Gd++ A+
  MMETSP0890-20130614|38423_1 154 ELGNDLFAKGDYQGAI 169
                  555557899****997 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.015
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeA 32 
                  y  +l l + n+ a+ n+A ++l+++++  A
  MMETSP0890-20130614|38423_1 172 YTLCLGLKKRNVLALSNRAMAYLKLKEFHNA 202
                  6668889999*************99988766 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00048
    PF13431.1   3 ekaleldPnnadaynnLAelllnnGdleeA 32 
                    al+ldPn+  +++++A +  ++G+++ A
  MMETSP0890-20130614|38423_1 207 TSALNLDPNHLKSLQRRASARDALGKHRAA 236
                  669***********************9988 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.91
    PF13431.1   3 ekaleldPnnadaynnLA 20 
                  e+al+++P +  ++++ A
  MMETSP0890-20130614|38423_1 241 ERALAIQPSSKALLQQQA 258
                  89******9876666655 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.016        19       3      25 ..     151     173 ..     148     186 .. 0.87
   2 ?    4.9   0.0     0.039        44       3      41 ..     185     223 ..     182     226 .. 0.86
   3 ?    5.5   1.8     0.026        30       4      42 ..     220     258 ..     217     260 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.016
    PF13428.1   3 allalarallalGdpdeAiallr 25 
                  a+++l++ l+a Gd+++Ai+++ 
  MMETSP0890-20130614|38423_1 151 AQRELGNDLFAKGDYQGAIRAYT 173
                  68899***************985 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.039
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaealllL 41 
                  al  +a a+l l ++  A+  +  al l+P+++  l + 
  MMETSP0890-20130614|38423_1 185 ALSNRAMAYLKLKEFHNAEIDCTSALNLDPNHLKSLQRR 223
                  78899*************************998766555 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.026
    PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealllLa 42 
                  l+++a a  alG + +A+   +rala +P++ ++l + a
  MMETSP0890-20130614|38423_1 220 LQRRASARDALGKHRAALLDMERALAIQPSSKALLQQQA 258
                  678999************************999998877 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.081        93       6      24 ..     155     173 ..     150     176 .. 0.72
   2 ?    3.8   0.0     0.074        84       2      20 ..     185     203 ..     184     216 .. 0.76
   3 ?    3.1   0.1      0.13   1.4e+02       5      33 .]     222     250 ..     218     250 .. 0.87
   4 ?   -2.7   0.0       8.7   9.9e+03      15      31 ..     256     272 ..     252     272 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.081
                  HHHHHHHHHHHHHHHHHHH CS
    PF13174.1   6 lalsyyklgdtdeAleale 24 
                  l+  +++ gd++ A++a+ 
  MMETSP0890-20130614|38423_1 155 LGNDLFAKGDYQGAIRAYT 173
                  454456667********96 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.074
                  HHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAl 20 
                  Al ++a++y+kl+++ +A 
  MMETSP0890-20130614|38423_1 185 ALSNRAMAYLKLKEFHNAE 203
                  8889*******98988886 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   5 klalsyyklgdtdeAlealerlikeyPdS 33 
                  ++a ++++lg++++Al  +er ++  P S
  MMETSP0890-20130614|38423_1 222 RRASARDALGKHRAALLDMERALAIQPSS 250
                  7899999999***********99999987 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 8.7
                  HHHHHHHHHHHHHHH-T CS
    PF13174.1  15 dtdeAlealerlikeyP 31 
                  + +  ++ l  +ik+ P
  MMETSP0890-20130614|38423_1 256 QQASIRRHLTSCIKNAP 272
                  44555678888888877 PP

>> PF09670.5  CRISPR-associated protein (Cas_Cas02710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0004      0.46     171     227 ..      84     136 ..      70     163 .. 0.78
   2 ?    0.8   1.3      0.11   1.3e+02     185     269 ..     165     245 ..     158     261 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0004
    PF09670.5 171 kklaegylaWDsldheeAldalekvledellleaerealekllevlralekilseae 227
                   +  +gy +W+s++ +eAl  ++   + + +    ++ +++l +v +a+e+i+ +++
  MMETSP0890-20130614|38423_1  84 HTYDKGYGKWESFNVDEALAEIDDTTKINPI----ESPVKELCAVKQADESIHIRNN 136
                  55668****************9966666555....7778888888888888876655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.11
    PF09670.5 185 heeAldalekvledellleaerealekllevlralekilseaegaleklkklvlvlladLlanAeRRaaeeryddAalrlYRaLE 269
                  ++ A++a   +l  ++    +  al + + +   l+++++++ +++ +l +l    l++L   A  R a ++   A+l + RaL 
  MMETSP0890-20130614|38423_1 165 YQGAIRAYTLCLGLKKR---NVLALSNRAMAYLKLKEFHNAEIDCTSAL-NLDPNHLKSLQRRASARDALGKHRAALLDMERALA 245
                  55666666655555544...66677777778888999********9999.5699999********************99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       667  (0.0487858); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.60
# Mc/sec: 1114.31
//
Query:       MMETSP0890-20130614|38421_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-35  120.3  16.5    1.4e-34  119.3  11.3    1.6  1  PF01040.13 UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> PF01040.13  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3  11.3     1e-38   1.4e-34      11     238 ..     114     357 ..      86     379 .. 0.78

  Alignments for each domain:
  == domain 1    score: 119.3 bits;  conditional E-value: 1e-38
   PF01040.13  11 glalaaggrldllllllllllllllqaavnvlNdyfDyeiDrdnkrkpeRPlpsGrisprealllglallllgllla..........lllg..plllllallglllgllYs.pplrlkrrgllgelvvglafgllillgaaavggdiplpllllalllfllalallltndirDvegDraaGirtlpvrlgrkatly.....alllaaallatallllllaplllllavalaalallrallllrrrd 238
                  g++la g++    +l+ ++l + ll+++++++Nd+fD+++D++  ++p+RP+psGri+ ++++  +++lll gl++a          ++ +    +l++a++g+++ +lYs pp++lk  g+ g +++g+++ +l+ + + a++g +++++++l+ +  + +l ++++nd++ +egDr+ G+++lpv +g   + y     + ++++  +a +++++ ++  ++l+ ++l  +a  +a+ll ++ +
  MMETSP0890-20130614|38421_1 114 GASLADGAEDLAKVLACMFLSGPLLTGYTQTINDWFDRDLDAI--NEPYRPIPSGRITESQVIGQIWILLLGGLGMAalmdiwaghdIIANplNSILAIAIFGSIVSYLYSaPPFKLKAEGWRGCFALGASYIALPWWCGMAMFGELTPSVVVLTSIYSFAGLGIAIVNDFKSIEGDRELGLKSLPVEFGVDGAKYicatlIDVTQLSGAAFLYVIGEQTYAYILAGLVLPQIAAQFAYLLKDPIE 357
                  45555555544445555555555********************..*****************99999999999998888999999**55551256777777788888******************************9999999999******************************************999999988788555555555533455555555555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.69
# Mc/sec: 1368.35
//
Query:       MMETSP0890-20130614|38428_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1006  (0.073581); expected 273.4 (0.02)
Passed bias filter:                      665  (0.0486396); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.47s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 332.83
//
Query:       MMETSP0890-20130614|38434_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.4   0.0    1.7e-16   59.8   0.0    1.3  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
    9.3e-10   38.5   0.3    5.8e-09   35.9   0.2    1.9  2  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase


Domain annotation for each model (and alignments):
>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   2.5e-20   1.7e-16       9      76 ..      47     112 ..      39     115 .] 0.92

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 2.5e-20
                  -EEEEEEEEEE.---EEEETTTTTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTC CS
   PF00254.23   9 dtVtvhyegkledgtvfdssysrakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekgl 76 
                  ++ ++hy+g+l dgt+fdssy+r+ p +f     qvikg+ e+l+ m +G+k++l ip+elaYg+ g 
  MMETSP0890-20130614|38434_1  47 SKCSCHYAGSLIDGTEFDSSYKRSAPSTFAPN--QVIKGWTEALQLMVEGDKWELYIPSELAYGAHGR 112
                  67899************************988..8*****************************9987 PP

>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.2   8.5e-13   5.8e-09      98     124 .]       7      33 ..       4      33 .. 0.94
   2 ?    0.4   0.0     0.083   5.7e+02      30      58 ..      60      88 ..      53      96 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 8.5e-13
   PF01346.13  98 aegeaFlaenkkkeGVktteSGLqYkv 124
                   +g +Fl++nkkkeGV+t++SGLqYkv
  MMETSP0890-20130614|38434_1   7 SQGVEFLEANKKKEGVITLDSGLQYKV 33 
                  6899**********************8 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.083
   PF01346.13 30 GaslgknlkeqleeqldkdallkGlqdal 58
                 G+++ +++k++  +++ +++++kG ++al
  MMETSP0890-20130614|38434_1 60 GTEFDSSYKRSAPSTFAPNQVIKGWTEAL 88
                 5566667777777779999*****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      190  (0.013897); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.87
# Mc/sec: 316.76
//
Query:       MMETSP0890-20130614|38429_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   77.4   0.0    2.1e-21   76.5   0.0    1.4  1  PF00828.14 Ribosomal protein L18e/L15


Domain annotation for each model (and alignments):
>> PF00828.14  Ribosomal protein L18e/L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.5e-25   2.1e-21       3     127 ..      69     205 ..      68     207 .. 0.88

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.5e-25
                  CCSHHHHHHH---S-----STT-T......STSSSCHHH-----GGHSGGGGCEEEEHHHHHHCTTTCTTSB-.........--TTTCEEEHHHT....SSEEEEE--....----S--EEEESEE-HHHHHHHCC----EE CS
   PF00828.14   3 dgktrgrgnkggrgraGvhkhkriflgklvklyrrlgkrgfnrpklrksrrnvapvnlgkLdelikklksgkl.........eeegktvvvlgev....tgyvKvlGs....GkltkpltVkalkfSkkArekIeaaGGevv 127
                  +gkt+grg+kg ++r+G+ + +++f+g++++l +rl+k gf++ k+r   +++ ++n+++++++i++   + +         + +   ++v+g+v       vK+l++     ++t+p+++++ ++S++A e Ie+aGG+v+
  MMETSP0890-20130614|38429_1  69 HGKTCGRGHKGTKQRSGG-SVRPGFEGGQTPLTKRLPKFGFTNAKFR---IDFDVINVSTIQNFIDMGRLS-VpkpdqvgqrVITMRDLIVAGLVrpqvRHGVKLLAKkgfhTQITTPIHIEVSDASPAAIELIEKAGGTVT 205
                  9****************9.************************8885...5***************98655.44666556666777777888888****9******965555799************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 1023.59
//
Query:       MMETSP0890-20130614|38435_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-69  232.4   0.1    6.7e-69  232.1   0.1    1.1  1  PF03949.10 Malic enzyme, NAD binding domain
    3.9e-06   26.4   0.0    6.8e-06   25.6   0.0    1.4  1  PF00390.14 Malic enzyme, N-terminal domain
  ------ inclusion threshold ------
      0.077   11.7   0.0       0.12   11.1   0.0    1.3  1  PF00890.19 FAD binding domain


Domain annotation for each model (and alignments):
>> PF03949.10  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   0.1   1.5e-72   6.7e-69       1     254 [.      51     322 ..      51     323 .. 0.91

  Alignments for each domain:
  == domain 1    score: 232.1 bits;  conditional E-value: 1.5e-72
                  T---HHHHH---HHHHHHHTS-...GGG--EEEE-------HHHHHHHHHHHT.---H........HHHHCTEEE----EEEBTTT....SSHSTTCCCCCBCS-SS--S..-SHHHHHHHH..SEEEE-SS----S-HHHHHHHHHHSS.S-EEEE--SSGGGSSS-HHHHHHCT--EEEEEB-.....EE...-EESSSB--GGGT----HHHHCCTTBSS--HHHHHHHHHHHHHT-SHHHHCTTBSS--GGGHHHHHHHHHHHHHHHH CS
   PF03949.10   1 iqGTaavvlAgllnalkitgkk...lseqkivvlGaGaAgigiaellvaalvkeGlse........eearkkivlvDskGlltedr....edlneekkelakktnevkkk..ttleevvkkakpdvliGlsgvagvfteeivkemaeste.rPiifalsNPtpkaEitpeealeatagkvlvatGspfkpvelngrsdvpnQvNNvlvFPgiglGaldvrakkitdemllaaaealAelveeeeleegkilPklsdirevslkvaaaVakaa 254
                  iqGT+a v+Ag+l+al+  + +   l+ q+i+++GaG+Agig+a +l++a+++  l++        +ea++k++++D +Gll +d     +++++ ++++a++ +  +    +tl +++ k++p++++Gl++v+g+f+ ei++ ++++++ rPii+alsNPt+kaE+t+++a+++++g++++a+Gspf+++e+n +  +p+Q+NN+++FPg+glGa ++++ +i+d+ml+aa++a A+ ++++el++g+++ ++++ir+vs++va+aV++aa
  MMETSP0890-20130614|38435_1  51 IQGTGATVVAGILAALRQLDLPvsaLAHQRILIAGAGSAGIGTAIALRNAAARCILKNnmnfaqltKEAASKFYILDAHGLLAKDGafdwDQFTPDQQSFAQDFDVPNLYrgQTLTQLIPKIQPTIILGLTAVPGLFSSEILQLINQYCPqRPIIMALSNPTSKAECTAAQAYSCSDGRAIFASGSPFPSIEFNSKILTPSQCNNMFIFPGVGLGASLSKSITISDSMLYAASTACADSLTQDELDRGQVFASVTRIRQVSKQVAIAVIEAA 322
                  8****************9998866689***************99888877554333223334556799****************9743334569********98876655669***********************************988**********************************************************************************************************************998 PP

>> PF00390.14  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-09   6.8e-06     141     182 .]       1      41 [.       1      41 [. 0.97

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.5e-09
                  HHHHHHHHHHHHHHHHHGGG-SEEEE-S--CHHHHHHHHHHT CS
   PF00390.14 141 eeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                  ++y++++de+++a  +++ p++l+qfEDf++k+a  +leryr
  MMETSP0890-20130614|38435_1   1 QRYYHLIDEILSALYTRW-PHILVQFEDFESKTAAPLLERYR 41 
                  579***************.9*********************8 PP

>> PF00890.19  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.6e-05      0.12       2      58 ..      81     137 ..      80     161 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.6e-05
                  EEEE-------HHHHHHHCHTT-EEEE-SS-CCGSGGGG-----B---....GGGSS CS
   PF00890.19   2 vvViGsGlAGlaAAleaaeaglkvavvekeqetggatawsqGgidavlspeqkkagi 58 
                  +++ G+G AG   A+++++a +++++ ++++  +++  +++    + +++  +k+g 
  MMETSP0890-20130614|38435_1  81 ILIAGAGSAGIGTAIALRNAAARCILKNNMNFAQLTKEAASKFYILDAHGLLAKDGA 137
                  79************************9999998887666655444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.43s 00:00:01.10 Elapsed: 00:00:00.83
# Mc/sec: 1022.06
//
Query:       MMETSP0890-20130614|38446_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   36.7   0.1    3.1e-09   36.4   0.1    1.0  1  PF13862.1 p21-C-terminal region-binding protein
  ------ inclusion threshold ------
      0.076   12.3   0.0      0.089   12.1   0.0    1.0  1  PF06300.7 Tsp45I type II restriction enzyme


Domain annotation for each model (and alignments):
>> PF13862.1  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   4.6e-13   3.1e-09       7      74 ..      24      92 .]      20      92 .] 0.89

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 4.6e-13
    PF13862.1  7 Feffdpeekdfhgikn.LLrqlfld..teidlseLadlileqnt.vGsvikvadgeesdvygflsvlnlkey 74
                 F+f dp+ek f++i+  L r+++ +  ++i l++L+dli +++   G+v+ va   + +v++f+ v+nl++y
  MMETSP0890-20130614|38446_1 24 FDFDDPQEKHFDSIRGiLFRNTIAKcvNNIALNDLSDLIANDPAsAGTVVEVA---DHEVICFAAVVNLQHY 92
                 9999**********964789999999999*************7549******5...678**********987 PP

>> PF06300.7  Tsp45I type II restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05     0.089      95     157 ..      12      79 ..       6      91 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
    PF06300.7  95 krlyerGleklieklkePkein..rqiGPmfkrwlkekskGvePvdladliaeeeda...iltasdev 157
                    ++e G+e ++    +P+e       G +f++ + + +  +   dl+dlia++ ++   +++ +d+ 
  MMETSP0890-20130614|38446_1  12 SVIQEEGVEDIVFDFDDPQEKHfdSIRGILFRNTIAKCVNNIALNDLSDLIANDPASagtVVEVADHE 79 
                  5689**************99762144699************************865322255555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       279  (0.0204067); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 367.44
//
Query:       MMETSP0890-20130614|38443_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1008  (0.0737273); expected 273.4 (0.02)
Passed bias filter:                      671  (0.0490784); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.44s 00:00:01.09 Elapsed: 00:00:00.82
# Mc/sec: 680.92
//
Query:       MMETSP0890-20130614|38445_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.05   12.8   0.4       0.06   12.5   0.3    1.2  1  PF00102.22 Protein-tyrosine phosphatase
       0.21   11.4   2.5       0.45   10.3   1.8    1.6  1  PF03725.10 3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   8.7e-06      0.06      70     141 ..      25      95 ..      12     138 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.7e-06
                  EEEESBSBS--SBSS---S-SSTSSEEESTTEEEEEE.EEEEEETTEEEEEEEEEETTTT.EEEEEEEEEEE CS
   PF00102.22  70 ivmltsleekgrekcaqYwpekeeesltygdikvelkkkekedekeytlrklelkkkkeekekrtvkqlhyt 141
                  +  lt++ee ++  + +   +++ ++ + ++++v++++ke++++ ++t+r + +k+ +++  ++ + +  ++
  MMETSP0890-20130614|38445_1  25 VLDLTQEEEDDDDDVLDLTIQEKTTEISKKKVTVTNEEKETTTTISTTIRSVPVKSPCAQA-EKNTLHNYFK 95 
                  4558888888888888888889999999*********99999**************99997.3444333333 PP

>> PF03725.10  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8   6.6e-05      0.45      13      45 ..      16      59 ..       8      73 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.6e-05
                 TE......EEES--HHHHHH-SEEEEEEE......ETTSEEEEEE CS
   PF03725.10 13 dk......ivlDptkeEedlgesdldlav......agtkdvvtlm 45
                 +k      +vlD+t+eEed  + +ldl++        +k++vt+ 
  MMETSP0890-20130614|38445_1 16 GKpkkskfMVLDLTQEEEDDDDDVLDLTIqektteI-SKKKVTVT 59
                 455555679**********9999***9996655531.23444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1030  (0.0753365); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 472.52
//
Query:       MMETSP0890-20130614|38450_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       572  (0.0418373); expected 273.4 (0.02)
Passed bias filter:                      418  (0.0305734); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.67
# Mc/sec: 550.80
//
Query:       MMETSP0890-20130614|38459_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   18.5  10.2     0.0018   18.5   7.0    3.7  3  PF07813.7  LTXXQ motif family protein
  ------ inclusion threshold ------
      0.044   13.7   0.3      0.044   13.7   0.2    3.2  3  PF08702.5  Fibrinogen alpha/beta chain family
        0.1   10.7   1.1       0.15   10.1   0.8    1.2  1  PF02538.9  Hydantoinase B/oxoprolinase
       0.13   11.5  26.8       0.21   10.9  18.5    1.3  1  PF00038.16 Intermediate filament protein
       0.83    6.7  37.3        1.1    6.4  25.8    1.0  1  PF12128.3  Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> PF07813.7  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.2      0.13   3.4e+02      35      89 ..      21      74 ..       6      82 .. 0.58
   2 !   18.5   7.0   6.8e-07    0.0018       6      94 ..     129     228 ..     124     233 .. 0.83
   3 ?    3.0   0.8     0.047   1.3e+02      28      72 ..     248     294 ..     240     306 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.13
    PF07813.7 35 relkakkeemramrkanfdetaperlaameamlearlea..vkkrakalkqfyavLt 89
                 + l+a++++ +a  +a+ ++t++e++     +le rl++  +  r++al+ + + Lt
  MMETSP0890-20130614|38459_1 21 AALRASATDSAARTEADRAKTKAEAIC---SRLETRLAEldASFRREALLPLQDKLT 74
                 223333444443333334677777776...777777777333446777777777666 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 6.8e-07
    PF07813.7   6 iaklkaeLkLtdaQkaalkalaeaaraearel............kakkeemramrk.........anfdetaperlaameamlearleavkkrakalkqfyavLtpEQkk 94 
                  +++l  eL+  ++Q ++l+++ +++r e+++             +          k         ++ d++ ++ l++++ +++  ++ +++r++ l++++  Lt+EQ+ 
  MMETSP0890-20130614|38459_1 129 LRDLSCELNAKEKQIKRLEQMLDEERGENARKfneinqdaelekR----------KlnealhalrKANDDAHVNFLEQQQSHINTITKLTQERDTSLDALRVRLTDEQQV 228
                  6677789*********************99997766644443333..........24446666777******************************************95 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.047
    PF07813.7  28 eaaraearel.kakkeemramrk.anfdetaperlaameamlearle 72 
                  +++++e+++  k + ++ +a+r  ++++ ++++ la + +ml+ +  
  MMETSP0890-20130614|38459_1 248 AELANEKHSNtKLQDAANVAQRRaSDLANQLARSLAEQDKMLSSQST 294
                  44444444443222333333333477788999999988888887765 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.6e-05     0.044      45     130 ..      66     153 ..      49     156 .. 0.79
   2 ?    4.3   2.6     0.013        35      53     124 ..     162     233 ..     155     240 .. 0.67
   3 ?    0.5   0.3       0.2   5.5e+02      37      84 ..     242     271 ..     231     309 .. 0.45

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-05
                  CHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  45 Leqlanktkeieelvksikeslkekqkqakdndni...esavskslekkiililekkilaqesqirvLqevlrsneskiqrLeqdiaqk 130
                  L  l++k + +++ +  ++++l ++++  +++++    +++ ++++e+++    ++  +a +sq+r L+  l+++e++i+rLeq++++ 
  MMETSP0890-20130614|38459_1  66 LLPLQDKLTAAYKRIAGLEDELSKARAGLSPSTISpdtKMNSNSEIEEEL-RAARADADAADSQLRDLSCELNAKEKQIKRLEQMLDEE 153
                  55677888888888888888888888888888654111344455556666.88999999*************************99875 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.013
                  CHHHHHHHHHHHHHHCCCHC..HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  53 keieelvksikeslkekqkq..akdndniesavskslekkiililekkilaqesqirvLqevlrsneskiqrLe 124
                  +ei++  +  k +l+e+++   + ++d+ ++ ++++ +++i  ++ k   + ++++++L+  l++ ++ + +L 
  MMETSP0890-20130614|38459_1 162 NEINQDAELEKRKLNEALHAlrKANDDAHVNFLEQQ-QSHI-NTITKLTQERDTSLDALRVRLTDEQQVVAKLS 233
                  444444444444555444321122334555666666.6666.8888999*********************9996 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.2
                  HHCCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHH CS
    PF08702.5  37 kieklenlLeqlanktkeieelvksikeslkekqkqakdndniesavs 84 
                  ++ +l  +L++ ++++++ ++  +  +                    +
  MMETSP0890-20130614|38459_1 242 RLANLLAELANEKHSNTKLQDAANVAQRR------------------A 271
                  44444333333333333333333222222..................2 PP

>> PF02538.9  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.8   5.6e-05      0.15     174     259 ..     122     207 ..      95     234 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.6e-05
    PF02538.9 174 sRipeenlaDlkaqiaanekGidsleklidevgeeevlelikkikdnaeeavk...kkiakldeiygakdievedkldkgklikveiti 259
                  +  ++++l Dl+ ++ a+ek i++le+++de+  e+ +++  +i++ ae  ++   +++++l +  ++ d +v   ++++++i+   ++
  MMETSP0890-20130614|38459_1 122 ADAADSQLRDLSCELNAKEKQIKRLEQMLDEERGENARKFN-EINQDAELEKRklnEALHALRK--ANDDAHVNFLEQQQSHINTITKL 207
                  5578999************************9999998875.5555555544400045555555..33333334445555555544444 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  18.5   7.6e-05      0.21      33     275 ..      42     286 ..      17     295 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.6e-05
   PF00038.16  33 kieeleekksaevsklkelyeke.laelrkqldeltkerarleleldnlreeledlrekyekelnkresaEaelaklrkdldeatlarvdleakveslkeeleflkklheeEvkelqkqik.eqvnvevdaarkldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqi....qsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelk 275
                  k e+   + +++ ++l+  + +e l  l+++l ++ k  a le el+++r+ l     + ++++n   ++E+el++ r+d d+a  +  dl +++++++++++ l ++ +eE  e  ++ +  ++ +e++   k  L+++l+ +r++ ++ a+ n  e  + + + +++l++e +++ +alr   ++ +++  ++    q le  l++l+++ ++ +++ + l++  + + +++ +  ++l + l+e  
  MMETSP0890-20130614|38459_1  42 KAEAICSRLETRLAELDASFRREaLLPLQDKLTAAYKRIAGLEDELSKARAGLSPSTISPDTKMNSNSEIEEELRAARADADAADSQLRDLSCELNAKEKQIKRLEQMLDEERGENARKFNeINQDAELE---KRKLNEALHALRKANDD-AHVNFLEQQQSHINTITKLTQERDTSLDALRVRLTDEQQVVAKLsaydQDLELRLANLLAELANEKHSNTKLQDAANVAQRRASDLANQLARSLAEQD 286
                  555555555556666666665543788999999999999999999999999999999999999**************************************************99999985455556665...888**********9887.56667777888889999999999999999886555544444444334477777777777766666666666655555555555555555555555433 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  25.8   0.00039       1.1     267     546 ..      18     299 ..       2     305 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00039
    PF12128.3 267 llhvelkadeerleeeqeevkeakkelkeqlrtledelkeasdelnqe.lsaanakleakeselealeeqkkkfed...kdieklkadldqlpsirseleeveaeldaltekvqdvqekferrkqkik..eqleeeleknker.leaireekerqkaaieealealesqlrkqleaqkeelneeekelesrleelkl.rldsatateeeleqleaadealekaqeelekaeaevea.lqseeeqlrkkrdealealqkaerrleelrealeeleeqllPqagsLlefLr 546
                   l ++l+a  + ++  ++e + ak ++++  ++le  l+e  + ++ e l  +++kl a+ +++  le++  k          +   +++   +i++el+++ a+ da  ++ +d+  ++++++++ik  eq+ +e +  ++r  ++i + +e  k + +eal+al+++     ++++ ++ e+++   + + +l + r +s  a    l++ ++ +++l++ ++ le + a+  a l +e++   k +d a+ a ++a++ +++l+  l+e  ++l+ q  s + fL 
  MMETSP0890-20130614|38459_1  18 ALDAALRASATDSAA-RTEADRAKTKAEAICSRLETRLAELDASFRREaLLPLQDKLTAAYKRIAGLEDELSKARAglsPSTISPDTKMNSNSEIEEELRAARADADAADSQLRDLSCELNAKEKQIKrlEQMLDEERGENARkFNEINQDAELEKRKLNEALHALRKAN----DDAHVNFLEQQQSHINTITKLTQeRDTSLDALRVRLTDEQQVVAKLSAYDQDLELRLANLLAeLANEKHSNTKLQDAANVAQRRASDLANQLARSLAEQDKMLSSQ--STHRFLT 299
                  444555555444443.4566777888888999999999999988765438899***********99999887754300033334567899999****************************9999998323444444444444455666666666777777777766654....577777777777777777777651556778888999999999*************99998761556666677889****************************976..5677775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1724  (0.126097); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.37s 00:00:01.40 Elapsed: 00:00:00.69
# Mc/sec: 1399.61
//
Query:       MMETSP0890-20130614|38462_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.6   7.8      0.044   13.3   5.4    1.1  1  PF04889.7 Cwf15/Cwc15 cell cycle control protein
       0.04   13.3   8.1      0.052   12.9   5.6    1.1  1  PF08418.5 DNA polymerase alpha subunit B N-terminal


Domain annotation for each model (and alignments):
>> PF04889.7  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.4   6.4e-06     0.044      29     125 ..      18     123 ..       6     151 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.4e-06
    PF04889.7  29 kyssrdLpahtkLKtRkegqgteeelekrdlraeLleaEaaakakkekskkkralenakkeeeleaakeaeededeekea.krkkk..........leeareidadds 125
                  + ++ +  a+   KtR++ q  ++el  r+l a+L ++E+a+++k+ +  +  al+ a+k ++ ++  +++  ++ee+++ k+ ++            ++++  +d+s
  MMETSP0890-20130614|38462_1  18 QLHQTEFQAQ--EKTRRDEQALADELYARELYANLQAEEEAKEQKQLEDDRRMALDLANKLSADHEILPHDPPSTEEDDTsKHPEIipslsfscrrRTHDQSTVSDSS 123
                  5555555443..49**************************99999998888888888888777666655554444444332344445555442222111222222222 PP

>> PF08418.5  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.6   7.6e-06     0.052      46     174 ..      11     169 ..       5     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.6e-06
    PF08418.5  46 dltlenldeFkkelqsqlekkarakask...............kkskrlaetekkeesilksattpsdlfgllri..lstPnlkkrklnes....efsassaespskfssPasaspstanstpssstqetas............vqtptkfskrsnsgevve 174
                  +l +en++  ++e+q+q + +   +a +               +++k++++ e  ++++l+ a++ s    +l +  +st + +++k +e     +fs ++     +++s +s s+ +++  +ss ++ +++            +++pt+fs+ ++s +vv 
  MMETSP0890-20130614|38462_1  11 KLEVENAQLHQTEFQAQEKTRRDEQALAdelyarelyanlqaeEEAKEQKQLEDDRRMALDLANKLSADHEILPHdpPSTEEDDTSKHPEIipslSFSCRRRT---HDQSTVSDSSRKKQRCTSSPSTPPQPmsssrnwttnntTTKPTSFSSIAPSSSVVI 169
                  5999999999*****999999999888899************99999****************9999888876442255555555555443876666655555...7888888887777776666665555578888888889999************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       969  (0.0708748); expected 273.4 (0.02)
Passed bias filter:                      389  (0.0284523); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 723.04
//
Query:       MMETSP0890-20130614|38469_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       122  (0.00892335); expected 273.4 (0.02)
Passed bias filter:                      121  (0.0088502); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 378.37
//
Query:       MMETSP0890-20130614|38464_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-13   48.8   0.0    1.4e-10   40.3   0.0    2.1  2  PF00266.14 Aminotransferase class-V
  ------ inclusion threshold ------
      0.072   12.1   0.0       0.11   11.4   0.0    1.4  1  PF01212.16 Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00036       2.5      25     140 ..      36     143 ..      22     145 .. 0.82
   2 !   40.3   0.0   2.1e-14   1.4e-10     135     240 ..     169     277 ..     160     372 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00036
                  -----------HHHHHHHHHHHHHHHHHHHHTT-S-GGGEE-------.--HHHHHH---------EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH--TTE CS
   PF00266.14  25 dyngnvhrsvhtlgkeatealeearekvaelinaeseeeiiFtsgtte.alnlvalslarslkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldeleklltpkt 140
                   +     r++ ++++ ++e+++e + ++ + +n++    ++ + g++  +++++a+++      ++++lv ++++ + +  w ++ ++ g   + ++v + + l+++  e +++p t
  MMETSP0890-20130614|38464_1  36 YSVVYSDRALNSMSSPFQEIMRELHVTLTRAYNTDH---MVMLPGSGTyGMEAAARAF----AFEKKALVIRNGYFSFR--WSQIFETLGKSSDDVTVLKARPLKTQSSECACNPGT 143
                  4445557899***********************996...6666666666*******98....567788999********..***999999999999999999999888888887765 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 2.1e-14
                  H--TTEEEEEEESB-S----B--...HHHHHHHHHH---EEEEE---STTTS---HHHHT-SEEE-----.---------EEE-HHHHHH----------EEE--S---E CS
   PF00266.14 135 lltpktklvaithvsnvtGvvqp...veeiaklakeagalvvvDaaqavghipidvkklgvDflafSgHK.llgPtGiGvlyvrrellekleplklggemveevsleett 240
                    ++k + +a+ hv+++ G++ p   ++ i + a+e ga+v++D++++ g   +d+++lgvD +    +K   gP+ +Gv++++++ le++  +k  + +v+  + +++ 
  MMETSP0890-20130614|38464_1 169 IYAEKPSFIAMPHVETSAGMILPdeyIKSISTAAHEIGAIVCLDGVAS-GTAWVDMSELGVDCYITAPQKgWSGPAAVGVIMLSDRGLEAALQAKQTSFTVDIGKWHGIM 277
                  3469999**************996778889999*************76.8899***********************************9998888888888777766655 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.7e-05      0.11     111     165 ..     162     213 ..      53     265 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
                  HHCCSS-..S..TS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE- CS
   PF01212.16 111 lealikevga..heenialisltitnntaGGqvvsleelreiaeiakeygiplhlDg 165
                  +e+ +    a  + e++++i +    +t +G +++ e+++ i+  a+e g  ++lDg
  MMETSP0890-20130614|38464_1 162 IEEVV----AtiYAEKPSFIAM-PHVETSAGMILPDEYIKSISTAAHEIGAIVCLDG 213
                  33333....2446699*****9.5556678**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 1731.16
//
Query:       MMETSP0890-20130614|38472_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-14   53.7   0.0    2.7e-13   49.4   0.0    2.1  1  PF03133.10 Tubulin-tyrosine ligase family
  ------ inclusion threshold ------
      0.029   13.0   0.0      0.042   12.5   0.0    1.2  1  PF14398.1  YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> PF03133.10  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   3.9e-17   2.7e-13     106     267 ..       2     144 ..       1     172 [. 0.86

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 3.9e-17
   PF03133.10 106 qkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkssslneesnekkgkkwslqelekyleeirkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenl.kpwLlEvNasPdlkstt 267
                  q+Y+e P L +grK   R+y++++     ++++Y+  +l  ++++Y     +++d  vH TN++ + +               ++  e+ +  e+ ++   +++i +++ + ++aa    ++  ++ + + fel G+Dil+d+ + +pwL+E+N  P+ + + 
  MMETSP0890-20130614|38472_1   2 QQYLEYPRLWHGRKAQYRCYAILKA--GGEAWLYRGRMLQVCAKPYG-DGLSFQDHRVHVTNVATNID-------------DPFFTPEMPEMMEIADPGGDFNKIARLVADLANAA----APFLFAASTHHFELCGIDILFDSMTnNPWLIEINCPPNNAGSM 144
                  9***********************8..99******************.7999************9999.............788999999999999****************9999....66677888899***********97637**********875544 PP

>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.1e-06     0.042     186     253 ..      90     159 ..      62     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.1e-06
    PF14398.1 186 lekkLeeaalkiaelldkalearlgELGlDlglDk.egriWllEvNskPgkk.sfkeakdeeareqslen 253
                  +++ + + a + a +l  a++ ++   G+D+  D+  +++Wl+E+N  P  + s+ + + e+ ++ ++++
  MMETSP0890-20130614|38472_1  90 IARLVADLANAAAPFLFAASTHHFELCGIDILFDSmTNNPWLIEINCPPNNAgSMPQGSVEHFHSTLYRE 159
                  556677788888888999999999999*******83579********99876244555555556655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       259  (0.0189438); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.72
# Mc/sec: 898.63
//
Query:       MMETSP0890-20130614|38463_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-34  117.5  36.6    2.4e-27   95.5   4.5    2.1  2  PF07690.11 Major Facilitator Superfamily
    7.2e-13   47.7  20.3    1.4e-11   43.5   3.5    3.1  3  PF00083.19 Sugar (and other) transporter
    5.3e-05   21.7  31.2      0.017   13.4   6.4    3.0  2  PF11700.3  Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   4.5   5.3e-31   2.4e-27       1     188 [.       8     198 ..       8     243 .. 0.85
   2 !   27.5  15.9   2.5e-10   1.1e-06       2     177 ..     239     432 ..     238     485 .. 0.71

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 5.3e-31
   PF07690.11   1 lllaaflaalarsilgpalplalaedlgispse.....igwlltlyslgyaiasllaGrlsdrfGrrrvlllglllfalglllllfasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvllllprepperkrkspaee 188
                  l+++afl++ + ++l+p l+ ++a++  ++  e      g l+t+ +l+ +  s+++G+l+d ++r+ ++++ l++ +l+++ +++ s  ++ l+++r ++G+  ga++p+  +l+ d++p+++r+   + ++++ s+G   g l++g++ +  +Wr++F+i+ai+++++a++v++++ ++p+ +  +++ ++
  MMETSP0890-20130614|38463_1   8 LFVSAFLVYSDQNFLAPHLT-TIAHEWAMNDRErdaklGGQLATGLFLIGGPISIILGALGDVYSRKNLFVVVLVIGGLASVGTSM-SKNFSQLFWSRSFTGISLGAALPLTFSLLGDLYPPSQRTELSARVGIALSAGQGAGQLFSGIVGDKTNWRYPFVIVAIAFFILALIVFCFMIEPPRGNFDPRSDKD 198
                  6899**********999999.99999887777777665777***************************************666668.66677********************************************************************************977777666666555555444 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 2.5e-10
   PF07690.11   2 llaaflaalarsilgpalplalaedlgispseigwlltlyslgyaiasllaGrlsdr.fGrrr.vlllglllfalglllll...fa...........sslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllgglla.sslgWravFlilailsllaav.lvllllprep 177
                  +l ++  ++ ++i++++l  +la++ g+s s+++w+++++++g++i+  + G+l++  +   + + ++ ++++ l+++l l   f+           ++l  +l++l + +G+      +++ +++  ++ +++r++a+++++++  lG   gp++ ++l+ ++ + r +F +++ ++ +++  + +l+ ++  
  MMETSP0890-20130614|38463_1 239 FLQGIPGCIPWGIISVFLNDYLAQNIGLSISAASWVMSGFGIGTFIGLAFSGWLGQLlYNINSaYAVIYMAIAELSGILPLilvFHidnffffakntTHLVPTLFLLNLTAGFLVVQTGTVVRSVLQNVVQPTHRSLAFAIFAIFDDLGKGGGPVVVAALVnTLNSRRRAFTLATCFGWFVGAlINALVAFTVV 432
                  566666778899******99************************************85543332333333333333233332235233333444544444447888888888888888999999999**********************************555565555555555555553323333333333 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   3.5   3.2e-15   1.4e-11      33     193 ..      32     185 ..       6     188 .. 0.83
   2 !    5.2   0.4    0.0013         6      45      78 ..     268     301 ..     216     322 .. 0.78
   3 !    8.9   0.8   9.3e-05      0.42     353     408 ..     375     430 ..     341     454 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 3.2e-15
   PF00083.19  33 glltsksakeessvlsglivssflvgaliGslfaglladrfGRkksllvalvlfvigavlqaaakakksvwvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiiglglnktsnadgwrillglqlv.pallllllllflpe 193
                   ++ ++ +++ +++  +l +++fl+g++i+ +++g+l+d ++Rk+ ++v+lv+   ++v + ++k   ++ +l+  R  +G+++G++  l+  +++ + p++ r  l++    a+++G+  ++++  +++   n   wr+++++ ++ + +l l++++f+ e
  MMETSP0890-20130614|38463_1  32 EWAMNDRERD-AKLGGQLATGLFLIGGPIS-IILGALGDVYSRKNLFVVVLVIGGLASVGTSMSK---NFSQLFWSRSFTGISLGAALPLTFSLLGDLYPPSQRTELSARVGIALSAGQGAGQLFSGIVGDKTN---WRYPFVIVAIaFFILALIVFCFMIE 185
                  4444444444.366667999*********5.67788*****************************...*************************************************************99999...****987765144444555566555 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0013
   PF00083.19  45 svlsglivssflvgaliGslfaglladrfGRkks 78 
                   +  ++++s f +g +iG  f g+l++ +   +s
  MMETSP0890-20130614|38463_1 268 ISAASWVMSGFGIGTFIGLAFSGWLGQLLYNINS 301
                  3577999*****************9987655555 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 9.3e-05
   PF00083.19 353 vfillfiaffalgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllfpii 408
                   ++++f+ f  lg g+ p+v+++ + +++ R +a+ +a++ +w +++li+ l +++
  MMETSP0890-20130614|38463_1 375 LAFAIFAIFDDLGKGGGPVVVAALVNTLNSRRRAFTLATCFGWFVGALINALVAFT 430
                  578899999999**************************************998876 PP

>> PF11700.3  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   6.4   3.7e-06     0.017     352     467 ..      76     184 ..       1     191 [. 0.77
   2 !   12.9   9.7   5.3e-06     0.024     330     464 ..     282     423 ..     249     432 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.7e-06
    PF11700.3 352 iiaiivlfeliplyGllGfipavlGlqqpwemyvlavlyglvlgglssysrsmfseliPrGkeaaFFaLfaitdkgssviGpllvglitdrtgniriaflflav.Llllplpll.llv 467
                  +++++v+  l  +   +         ++  ++++   ++g++lg++ ++  s++++l P+ ++++  a   i+  ++   G l++g++ d+t+  r++f+++a+ +++l+l+++ +++
  MMETSP0890-20130614|38463_1  76 FVVVLVIGGLASVGTSM--------SKNFSQLFWSRSFTGISLGAALPLTFSLLGDLYPPSQRTELSARVGIALSAGQGAGQLFSGIVGDKTN-WRYPFVIVAIaFFILALIVFcFMI 184
                  33333333333333333........5777889************************************************************8.9****9998647788888884444 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 5.3e-06
    PF11700.3 330 avlGaflwsalsrrfglktkqtiiaiivlfeliplyGllGfipa....vlGlqqpwe....myvlavlyglvlgglssysrsmfseliPrGkeaaFFaLfaitdkgssviGpllvglitdrtgniriaflflavLlllplpll 464
                   ++G  + ++l + + +  ++ +++ ++++el  +  l+ +++     ++  ++++     +++l+  +g+ ++   ++ rs++  ++ + ++++ Fa+fai d ++   Gp++v+++++  ++ r af + + +  +  +l+
  MMETSP0890-20130614|38463_1 282 TFIGLAFSGWLGQLLYNINSAYAVIYMAIAELSGILPLI-LVFHidnfFFFAKNTTHlvptLFLLNLTAGFLVVQTGTVVRSVLQNVVQPTHRSLAFAIFAIFDDLGKGGGPVVVAALVNTLNSRRRAFTLATCFGWFVGALI 423
                  456666666777777666444444444445444444444.333367764445555557777********************************************************************99888776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       505  (0.0369368); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.40s 00:00:01.35 Elapsed: 00:00:00.84
# Mc/sec: 1543.37
//
Query:       MMETSP0890-20130614|38478_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       418  (0.0305734); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 229.37
//
Query:       MMETSP0890-20130614|38477_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-45  155.0   0.1    1.7e-45  154.5   0.0    1.2  1  PF00406.17 Adenylate kinase
    4.6e-11   43.4   0.2    7.3e-11   42.8   0.1    1.4  1  PF13207.1  AAA domain
      5e-07   29.9   0.8    2.7e-06   27.6   0.6    2.0  1  PF13238.1  AAA domain
    2.3e-05   23.7   2.9     0.0047   16.2   0.1    2.8  2  PF02223.12 Thymidylate kinase
    3.1e-05   23.7   0.0    0.00024   20.8   0.0    2.0  1  PF13671.1  AAA domain
    0.00089   18.7   0.1     0.0022   17.4   0.0    1.7  1  PF05191.9  Adenylate kinase, active site lid
     0.0049   16.7   0.0     0.0091   15.8   0.0    1.5  1  PF13521.1  AAA domain
  ------ inclusion threshold ------
      0.015   15.0   0.7       0.13   12.0   0.0    2.2  2  PF13189.1  Cytidylate kinase-like family
      0.037   13.7   0.0      0.066   12.9   0.0    1.3  1  PF00350.18 Dynamin family


Domain annotation for each model (and alignments):
>> PF00406.17  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   1.1e-48   1.7e-45       1     149 [.      29     206 ..      29     208 .. 0.97

  Alignments for each domain:
  == domain 1    score: 154.5 bits;  conditional E-value: 1.1e-48
                  EE--TT-----HHHHHHHHCS-EEEE---HHHHHHHCT-----HHHHHHHTT----HHHHHHHHHHHHHSH.CGH-EEEEE----SHHHHHHHHHHHHCTT-EESEEEEEE--HHHHHHHHHH................................GSHHHHHHHHHHHHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00406.17   1 llGaPgaGKGtqaeklvkkyglvhlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkerleqk.dkkkgflldgfPRtveqaealeelleeekvkldlvleldvpeevlveRllk................................DneetvkkRletykkqtepvidyykkk 149
                  + G+Pg+GKGtq+e lvkkyg++h+stGd lR++vk+gt+lGkeak++m++g+lvpde+v+++ k ++e+k +kk+g+lldg PRt +q eal+e    ++   +l+l l+vp+++++eR  +                                D+ e++ +R+++y+k++++v   y++k
  MMETSP0890-20130614|38477_1  29 ISGGPGSGKGTQCELLVKKYGIKHISTGDALRHHVKTGTDLGKEAKAYMERGDLVPDELVIGICKAEMETKeAKKNGWLLDGMPRTKKQCEALDE----MNLIPNLFLLLEVPDQIMMERACGrrqdpvtrkiyhikykpapneeiakrliirsdDTVEKMTNRITQYHKNISAVSGSYEDK 206
                  57*******************************************************************998999********************....789999**********************************************************************9999986 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   4.8e-14   7.3e-11       1     110 [.      26     177 ..      26     210 .. 0.60

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 4.8e-14
                  EE--B--TT---HHHHHHHHHHSTEEEEEGGG.B--GGGS-B-----B.--SSGGGB-HHHH.....HHHH.........H..HHHHHH................................TTS-----------............EEEEE----TTGGTTT-SS CS
    PF13207.1   1 viaitGppGsGKsTlakeLaerlglpvlsldd.llreeglkelddger.eskdadadllaai.....ldglaa.....kkdtlswvidg................................aleseldlrleead............eiiyldaplpecrkrllkr 110
                  +i+i+G pGsGK T +++L +++g++++s++d l r   + ++d g + +++ +  dl+ ++      +++++     k    +w++dg                                      +      +            +i y  ap++e +krl+ r
  MMETSP0890-20130614|38477_1  26 KIIISGGPGSGKGTQCELLVKKYGIKHISTGDaL-RHHVKTGTDLGKEaKAYMERGDLVPDElvigiCKAEMEtkeakKN---GWLLDGmprtkkqcealdemnlipnlflllevpdqimmE----RA------CgrrqdpvtrkiyHIKYKPAPNEEIAKRLIIR 177
                  69******************************77.444444444222223334444444433322222222224433344...5*****888877777777776666665544444322220....11......12222233333344444445554555555555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.6   1.7e-09   2.7e-06       1     118 [.      27     154 ..      27     194 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.7e-09
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl.......gdvlrdlakengleeevddkidtkeskeldedkldelldkleeneselaegenviidghlaeleledlkdlkl......vvLradpeelarRlekRgrkeek 118
                  I+i+G pG+GK T +++L ++        gd lr+ +k   +     + ++++   + de +  +   ++e +e   a+++ +++dg ++ ++  ++ d +         L+++++++++R   R++++  
  MMETSP0890-20130614|38477_1  27 IIISGGPGSGKGTQCELLVKKYgikhistGDALRHHVKTGTDLGKEAKAYMERGDLVPDELVIGICKAEMETKE---AKKNGWLLDGMPRTKKQCEALDEMNlipnlfLLLEVPDQIMMERACGRRQDPVT 154
                  9******************9966777888888888888877777777777777777777777666666666654...577777999999999988888888889999999999999999998887776654 PP

>> PF02223.12  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.1e-06    0.0047       2      50 ..      30      80 ..      29     102 .. 0.87
   2 !    6.3   0.2    0.0032       4.8     118     145 ..     127     151 ..     114     223 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.1e-06
                 E--TT---HHHHHHHHHHHHHSEE-...EEEESS-TTS----HHHHHHHTCS CS
   PF02223.12  2 EGlDGaGKttqaellkeklkeqgik...vvltrepggteiGelirelllkee 50
                  G  G+GK tq+ell++k+  ++i+   +++ + ++gt++G+ ++++++ + 
  MMETSP0890-20130614|38477_1 30 SGGPGSGKGTQCELLVKKYGIKHIStgdALRHHVKTGTDLGKEAKAYME-RG 80
                 6888*******************99999999**************9998.44 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0032
                  E-SEEEEEESSHHHHHTHHHTTT-TT.S CS
   PF02223.12 118 kPdltflldvdpevalkRlrkrgeldee 145
                   P+l++ll+v+ ++ ++R+  r++   +
  MMETSP0890-20130614|38477_1 127 IPNLFLLLEVPDQIMMERACGRRQ---D 151
                  69****************999998...2 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.6e-07   0.00024       2     122 ..      27     152 ..      27     199 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.6e-07
    PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlfg...tdqqsktdytrvlkr.....lyqilnklarkalsagrsvivdatnlsreerarfvklakrlgvpvrivylevpeetlreRlakRerng 122
                  +++ G pGsGK t +e l+kk g+ ++s+ ++ + + +   + ++  + y ++ +      +++i+++  +++ ++++  ++d   +++++ + ++++      p   + levp++ + eR   R+++ 
  MMETSP0890-20130614|38477_1  27 IIISGGPGSGKGTQCELLVKKYGIKHISTGDALRHHVKtgtDLGKEAKAYMERGDLvpdelVIGICKAEMETKEAKKNGWLLDGMPRTKKQCEALDEMNL---IPNLFLLLEVPDQIMMERACGRRQDP 152
                  578899**********************998888777735422224444555444333345899*********************999999999999985...78899999999999999988877754 PP

>> PF05191.9  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0022       1      36 []     148     179 ..     148     179 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
                  -EEES----EEBTTTB--S-----S-----EE--TT CS
    PF05191.9   1 RrvCpdCGrvYhikfnpPkvdgvCDkCgepLiqRkD 36 
                  Rr +p + ++Yhik++p  ++++      +Li R+D
  MMETSP0890-20130614|38477_1 148 RRQDPVTRKIYHIKYKPAPNEEIAK----RLIIRSD 179
                  9****************99999988....8888888 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     6e-06    0.0091       1      75 [.      26     106 ..      26     115 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6e-06
    PF13521.1   1 kivitGgpstGKTtlleaLaar.gypvv..pEvarevleeklakge..ealpwee..dllafaeavleaqleqeaaaaaskl 75 
                  ki+i+Ggp++GK t +e L ++ g++ +   ++ r  ++ +++ g+  +a ++     + ++ +++ +a++e+ +a +++++
  MMETSP0890-20130614|38477_1  26 KIIISGGPGSGKGTQCELLVKKyGIKHIstGDALRHHVKTGTDLGKeaKAYMERGdlVPDELVIGICKAEMETKEA-KKNGW 106
                  79*****************976699977779999999999995555003333321223455666666766666665.34555 PP

>> PF13189.1  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.6e-05      0.13       2      39 ..      27      65 ..      26     124 .. 0.77
   2 ?    1.6   0.1      0.13     2e+02     126     162 ..     155     191 ..     150     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.6e-05
    PF13189.1  2 ItIsrqyGSgGreigekLaeklgipyydk.eileeaake 39
                 I+Is+  GSg+ + +e L +k+gi+ ++  + l+   k 
  MMETSP0890-20130614|38477_1 27 IIISGGPGSGKGTQCELLVKKYGIKHISTgDALRHHVKT 65
                 99************************9987666666555 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.13
    PF13189.1 126 dRvervmereglsekeaekkikktDkrrakyykyytg 162
                  +++ +++ +   +e+ a+++i ++D   +k+ +++t+
  MMETSP0890-20130614|38477_1 155 RKIYHIKYKPAPNEEIAKRLIIRSDDTVEKMTNRITQ 191
                  6677777777888888888888888888888887774 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.3e-05     0.066      18      80 ..     140     211 ..     137     227 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.3e-05
                  H-----------------EEEEEEE-----........-------E-EE........T-----CHHHHHHHHHHH---- CS
   PF00350.18  18 LlgedilprgpgptTrrplvlqlgeeeras........eravkeevkee........ekkledfdevreeieketekla 80 
                  ++ e+ + r++ p+Tr++ +++++  ++++        +        ++        ++  +++++v   +e+++ k++
  MMETSP0890-20130614|38477_1 140 IMMERACGRRQDPVTRKIYHIKYKPAPNEEiakrliirS-------DDTvekmtnriTQYHKNISAVSGSYEDKMVKID 211
                  67788899*****************99988754444432.......333411222245566666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       536  (0.0392042); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.43s 00:00:01.00 Elapsed: 00:00:00.86
# Mc/sec: 649.25
//
Query:       MMETSP0890-20130614|38476_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-16   58.1   0.1    2.2e-08   34.2   0.0    3.1  3  PF00004.24 ATPase family associated with various cellular activities (AAA)
    1.5e-05   24.6   0.0    4.8e-05   22.9   0.0    1.9  2  PF07728.9  AAA domain (dynein-related subfamily)
    0.00015   22.3   0.0    0.00067   20.3   0.0    2.1  1  PF13207.1  AAA domain
    0.00044   20.5   0.0     0.0011   19.2   0.0    1.7  1  PF13191.1  AAA ATPase domain
    0.00064   19.7   0.0      0.003   17.5   0.0    2.2  1  PF00910.17 RNA helicase
    0.00068   18.6   0.1     0.0038   16.2   0.0    2.0  2  PF06414.7  Zeta toxin
    0.00087   19.4   0.0     0.0028   17.8   0.0    2.0  1  PF13238.1  AAA domain
    0.00088   19.2   0.0      0.003   17.5   0.0    1.9  1  PF13401.1  AAA domain
     0.0018   18.0   0.0      0.043   13.6   0.0    2.4  2  PF13173.1  AAA domain
     0.0019   17.0   0.0     0.0041   15.9   0.0    1.5  1  PF05673.8  Protein of unknown function (DUF815)
      0.006   16.9   0.0      0.018   15.3   0.0    1.8  1  PF08477.8  Miro-like protein
     0.0065   16.0   0.0      0.016   14.8   0.0    1.6  1  PF13245.1  Part of AAA domain
     0.0081   16.0   0.0      0.019   14.8   0.0    1.8  1  PF13304.1  AAA domain
  ------ inclusion threshold ------
       0.01   14.7   0.0       0.02   13.8   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.012   15.0   0.0      0.035   13.5   0.0    1.7  1  PF13479.1  AAA domain
      0.013   15.2   0.0      0.041   13.6   0.0    1.8  2  PF13671.1  AAA domain
      0.014   15.2   0.2       0.18   11.6   0.0    2.6  3  PF13521.1  AAA domain
      0.017   14.7   0.0      0.036   13.6   0.0    1.6  1  PF01637.13 Archaeal ATPase
      0.022   14.9   0.7      0.022   14.9   0.5    2.1  2  PF13476.1  AAA domain
      0.026   14.0   0.2      0.053   13.0   0.0    1.6  2  PF13086.1  AAA domain
      0.029   13.4   0.0      0.074   12.1   0.0    1.7  1  PF02463.14 RecF/RecN/SMC N terminal domain
      0.033   14.0   0.1       0.25   11.2   0.0    2.6  2  PF01926.18 50S ribosome-binding GTPase
      0.041   13.3   0.0      0.095   12.1   0.0    1.6  1  PF13555.1  P-loop containing region of AAA domain
      0.041   12.9   0.0      0.068   12.1   0.0    1.4  1  PF04670.7  Gtr1/RagA G protein conserved region
      0.046   13.2   0.0       0.43   10.0   0.0    2.4  2  PF05729.7  NACHT domain
      0.056   12.7   0.0        0.1   11.8   0.0    1.3  1  PF01695.12 IstB-like ATP binding protein
      0.063   12.7   0.0       0.29   10.6   0.0    1.9  2  PF00308.13 Bacterial dnaA  protein


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         3   1.5e+03      51      75 ..     133     163 ..      86     180 .. 0.66
   2 !   34.2   0.0   4.3e-11   2.2e-08       1      74 [.     333     411 ..     333     444 .. 0.76
   3 !   20.2   0.0   9.1e-07   0.00046      86     130 ..     496     540 ..     456     542 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 3
                  HHHHHTS.-SEEEEEETGGGC-HHH.....S CS
   PF00004.24  51 keakeka.kpsilfiDEidalaksr.....s 75 
                  +++k++a ++++l++   d +a +      s
  MMETSP0890-20130614|38476_1 133 EQVKQSAvSHCVLLVAADDTIAANGetnsdS 163
                  3356666778999998888888887432211 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 4.3e-11
                  EEEE-------HHHHHHHHHHCTHEEEEEECCSSS.SST-HHHHHHHHHHHHHHHHTS....-SEEEEEETGGGC-HHH CS
   PF00004.24   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakeka....kpsilfiDEidalaksr 74 
                  +llyGppG GKT+++ka+a++++++++++ +s++  ++ + +++ +++  +  a e      +++i+++++ida  +  
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIITLPLSRIQtNNQLMNAMYDLSYSVPGADERVrysyDQIIFVMEDIDAASSVV 411
                  69********************************976655555556665555555555677666888888999876555 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 9.1e-07
                  HHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE- CS
   PF00004.24  86 vnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                  ++ +l++ldg  ++ +  ivi+++n+p+ ld+allr gR+++k+++
  MMETSP0890-20130614|38476_1 496 LSGILNALDGIVDSPG-RIVIMTSNHPELLDSALLRpGRINIKLYL 540
                  5668899999999755.9************************9987 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   9.5e-08   4.8e-05       2      46 ..     333     377 ..     332     414 .. 0.75
   2 ?   -2.1   0.0       5.1   2.6e+03     105     134 ..     502     527 ..     462     530 .. 0.58

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 9.5e-08
                  EEEE------HHHHHHHGGGGBS--EEEEE--TT--HHHH---B- CS
    PF07728.9   2 vlLvGppGtgKselaerlaealnreveyvqltrdtteedlkgrre 46 
                  +lL GppG+gK+++++ +a+ ++r + +  l+r  t ++l   + 
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIITLPLSRIQTNNQLMNAMY 377
                  89*******************************999999987654 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 5.1
                  ---........-EEEEE-SS--.-TT-TTHH CS
    PF07728.9 105 akndd.lleknfrviatanpldrslnelspa 134
                  a  d  + +++  vi+t+n ++     l++a
  MMETSP0890-20130614|38476_1 502 A-LDGiVDSPGRIVIMTSNHPE----LLDSA 527
                  2.23445555889999999887....44444 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-06   0.00067       2      34 ..     333     373 ..     333     482 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.3e-06
                  E--B--TT---HHHHHHHHHH.........STEEEEEGGG.B- CS
    PF13207.1   2 iaitGppGsGKsTlakeLaer.........lglpvlsldd.ll 34 
                  i+++GppGsGK+++ k++a +         l    + ++  l+
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKtqrhiitlpL--SRIQTNNqLM 373
                  899****************993333333220..2333333333 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.2e-06    0.0011      24      54 ..     328     356 ..     304     441 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.2e-06
    PF13191.1  24 p...lllvtGpsGiGKSsLlrelakpillerlrf 54 
                  p    +l++Gp+G+GK+s++++     ++++ ++
  MMETSP0890-20130614|38476_1 328 PyrlGILLYGPPGSGKTSIIKA-----IAHKTQR 356
                  356579****************.....5444443 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     6e-06     0.003       1      62 [.     333     408 ..     333     421 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6e-06
   PF00910.17   1 iwlyGpsgeGKStlakeLakallkkl..............klkkkdsvys.rnpeddfwdgYtgqevvvidDfgqvk 62 
                  i+lyGp+g GK++++k +a++ ++++               +   d  ys  ++++ + ++Y+ q + v++D+ + +
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIitlplsriqtnnqlMNAMYDLSYSvPGADERVRYSYD-QIIFVMEDIDAAS 408
                  789***********************9999999988888744445666773455555556665.8888888888765 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.2   6.1e+02     132     185 ..     219     274 ..     213     283 .. 0.82
   2 !   16.2   0.0   7.5e-06    0.0038      18      52 ..     332     365 ..     319     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.2
    PF06414.7 132 kelSelgilqRyeee.laekge..gRrvpkevhdeayeglpesvealeaekavdrir 185
                  ke + + + qR + +  ++  +  gR  ++e  + + +  +  +e++++++  dr  
  MMETSP0890-20130614|38476_1 219 KENASQITPQRTKVKtTYKI-SasGRHAQREIDKFVNGAYQWYIEQIKNSESTDRFM 274
                  78888889999999953333.3469*****999999999999999999999999876 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 7.5e-06
    PF06414.7  18 avllgGqpGAGKtslaellleelaagnivridaDe 52 
                   +ll G+pG+GKts+++++  ++ ++ i+++   +
  MMETSP0890-20130614|38476_1 332 GILLYGPPGSGKTSIIKAIAHKT-QRHIITLPLSR 365
                  689*******************9.99999876555 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.4e-06    0.0028       1      65 [.     333     406 ..     333     462 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.4e-06
    PF13238.1   1 IlitGtpGvGKtTlakeLaerl............gdvlrdlakengleeevddkidtkeskeldedkldelldklee 65 
                  Il+ G+pG+GKt++ k++a ++              + + ++  ++l+++v      +e  +  +d+   +++ +++
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTqrhiitlplsriQTNNQLMNAMYDLSYSVPGA---DERVRYSYDQIIFVMEDIDA 406
                  89****************999777777666655533333333333333333333...44455555554444444444 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.8e-06     0.003       6      34 ..     332     360 ..     325     395 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.8e-06
    PF13401.1   6 ilvvtGesGvGKTtllrrlarqldeeaea 34 
                   ++++G++G+GKT  ++ +a++ ++++++
  MMETSP0890-20130614|38476_1 332 GILLYGPPGSGKTSIIKAIAHKTQRHIIT 360
                  589******************98766554 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.4e-05     0.043       5      45 ..     333     371 ..     330     410 .. 0.82
   2 ?    1.6   0.0      0.43   2.2e+02      72     104 ..     495     525 ..     451     540 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.4e-05
    PF13173.1   5 lvitGpRrvGKttllkqlakellkeesilyinlddeelrkl 45 
                  ++++Gp ++GKt ++k +a++    ++i+ + l + ++ + 
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQ--RHIITLPLSRIQTNNQ 371
                  789***************98888..*******999777443 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.43
    PF13173.1  72 evpewedalkslvddgrnldviltGsnskllsk 104
                   + ++ +al+++vd+   +++++  sn   l +
  MMETSP0890-20130614|38476_1 495 DLSGILNALDGIVDSP--GRIVIMTSNHPELLD 525
                  46788999******66..899999999998866 PP

>> PF05673.8  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.2e-06    0.0041      56     108 ..     333     389 ..     314     408 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.2e-06
    PF05673.8  56 vLLwGarGtGKSslvkallneyaeeg....Lrlievekedlkdlpkivellrerper 108
                  +LL+G  G+GK s++ka+ ++++++     L  i+ +++ ++++ ++   +  ++er
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIitlpLSRIQTNNQLMNAMYDLSYSVPGADER 389
                  8********************999885644555666666666666666666555555 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-05     0.018       2      81 ..     333     411 ..     332     436 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.6e-05
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggreelkkehell.lkkadaillvy 81 
                  +++ G +g+GK+s++++++ +++    ++++ +  +++ +++++  d ++ ++   ++r + + +++++ +++ da+  v+
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQR-HIITLPLSRIQTNNQLMNAMYDLSY-SVPGADERVRYSYDQIIFvMEDIDAASSVV 411
                  578899*************99999.8888888888888888888888766.777777777777777777799999887665 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.1e-05     0.016      14      34 ..     334     353 ..     329     387 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.1e-05
    PF13245.1  14 vvtGgPGtGKTttlaaiiaal 34 
                  ++ G+PG+GKT  ++++ia+ 
  MMETSP0890-20130614|38476_1 334 LLYGPPGSGKT-SIIKAIAHK 353
                  558********.999999985 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.7e-05     0.019       3      21 ..     334     352 ..     333     509 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.7e-05
    PF13304.1   3 viiGpNgsGKSnlLkaldf 21 
                  +++Gp gsGK++++ka++ 
  MMETSP0890-20130614|38476_1 334 LLYGPPGSGKTSIIKAIAH 352
                  79***************74 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-05      0.02      53      96 ..     333     376 ..     331     404 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4e-05
    PF05496.7  53 vllyGpPGlGkttlakiiakelgvelkvtsgPvlekagdlaall 96 
                  +llyGpPG Gkt++ k ia++ + ++ +     ++ +++l   +
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIITLPLSRIQTNNQLMNAM 376
                  89******************999888776666666666666555 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.9e-05     0.035       6      24 ..     333     352 ..     330     358 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.9e-05
    PF13479.1   6 vliYGkpGiGKTslaktl.p 24 
                  +l+YG+pG+GKTs +k +  
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIaH 352
                  79************998754 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.9     5e+03      99     123 ..     141     165 ..     134     194 .. 0.70
   2 ?   13.6   0.0     8e-05     0.041       2      38 ..     333     369 ..     333     430 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 9.9
    PF13671.1  99 vrivylevpeetlreRlakRerngd 123
                   ++v l + ++t++++ +  ++++d
  MMETSP0890-20130614|38476_1 141 SHCVLLVAADDTIAANGETNSDSSD 165
                  5788888888888877666666543 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 8e-05
    PF13671.1   2 vllvGlpGsGKstlaerllkklgyvrlsqdtlrkrlf 38 
                  +ll G+pGsGK+  +++++ k++  +++ +  r + +
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIITLPLSRIQTN 369
                  6899**************9999866666555444444 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.4   7.2e+02      97     151 ..     128     183 ..      96     191 .. 0.71
   2 ?   11.6   0.0   0.00035      0.18       2      24 ..     333     356 ..     332     374 .. 0.82
   3 ?   -1.5   0.0       3.9     2e+03     106     156 ..     391     442 ..     372     448 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.4
    PF13521.1  97 ekeleeaarekrydl.vfllppepeieqDgeRredeeeaeaiderlrealeelgip 151
                  +++++e+++++  ++ v+l+  +  i  +ge   d ++  ++++r    l++l i+
  MMETSP0890-20130614|38476_1 128 ADQCKEQVKQSAVSHcVLLVAADDTIAANGETNSDSSDDIDSEDRASMELNKLCIQ 183
                  45677788888877757777777777888888888777777777776666666555 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00035
    PF13521.1   2 ivitGgpstGKTtlleaLaar.gy 24 
                  i + G+p++GKT++++a+a + + 
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKtQR 356
                  7899**************965344 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.9
    PF13521.1 106 ekrydlvfllppepei.eqDgeRredeeeaeaiderlrealeelgipvievp 156
                  +  yd+++++ ++ ++ ++   Rr++ e  +  +++    l+++g ++    
  MMETSP0890-20130614|38476_1 391 RYSYDQIIFVMEDIDAaSSVVLRRDSKESKQSDYDITAPNLTKRGSRCRSTT 442
                  6679996666665555478889999988888888888777777777776655 PP

>> PF01637.13  Archaeal ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     7e-05     0.036      23      51 ..     333     357 ..     324     426 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7e-05
                  EEEE--TT---HHHHHHHHHH-..---HH CS
   PF01637.13  23 iviyGprrsGKTaLlkeileelkekgkrv 51 
                  i++yGp +sGKT+++k i+ +++    r+
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQ----RH 357
                  79****************99883....34 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       6.4   3.3e+03      72      78 ..     233     239 ..     157     320 .. 0.57
   2 ?   14.9   0.5   4.4e-05     0.022      23      40 ..     334     351 ..     332     502 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6.4
    PF13476.1  72 kayvels 78 
                  k+ +++s
  MMETSP0890-20130614|38476_1 233 KTTYKIS 239
                  2222222 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 4.4e-05
    PF13476.1  23 lItGpNGsGKTTildAic 40 
                  l++Gp GsGKT+i++Ai 
  MMETSP0890-20130614|38476_1 334 LLYGPPGSGKTSIIKAIA 351
                  89***************5 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.8   2.9e+03      83      83 ..     205     205 ..     111     270 .. 0.52
   2 ?   13.0   0.0    0.0001     0.053      21      94 ..     334     438 ..     314     581 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 5.8
    PF13086.1  83 y 83 
                   
  MMETSP0890-20130614|38476_1 205 I 205
                  0 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.0001
    PF13086.1  21 liqGpPgtGKtttivelisqllsek.............................seseakkkkrvLvcapsnaavDeilerlle..ldeegkkynpkivRignea 94 
                  l+ GpPg+GKt+ i ++ ++  ++                              +  + ++++ + v +   aa   +l+r  +   +++   + p+++  g++ 
  MMETSP0890-20130614|38476_1 334 LLYGPPGSGKTSIIKAIAHKTQRHIitlplsriqtnnqlmnamydlsysvpgadERVRYSYDQIIFVMEDIDAASSVVLRRDSKesKQSDYDITAPNLTKRGSRC 438
                  899********9999999999333366666666666777777777777788877677777888888888888888888888777444444444444555444444 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015     0.074      28     115 ..     334     428 ..     311     438 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00015
                  EE--------HHHHHHHHHH------.--...-----TTSS--........--------EEEEEEEEE----E.......EEEEEEEE----EEEEE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  28 aivGpNGSGKsnvldAilFvLGeksakkl...rseklsdlihk........skskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseyking 115
                   ++Gp GSGK++++ Ai +    ++  +l   r ++ ++l+++          + ++v   + +i+f  ed +    +++v+++r  k++++s+y i  
  MMETSP0890-20130614|38476_1 334 LLYGPPGSGKTSIIKAIAHKTQ-RHIITLplsRIQTNNQLMNAmydlsysvPGADERVRYSYDQIIFVMEDID---AASSVVLRRDSKESKQSDYDITA 428
                  579**************65433.22222222223333333333333333333333333333334444333333...34556666666666677777655 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       9.8     5e+03      67      84 ..     127     146 ..      77     175 .. 0.52
   2 ?   11.2   0.0   0.00049      0.25       2      26 ..     333     357 ..     332     573 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 9.8
                  HHHHHHHHHCTSSE..EEEE CS
   PF01926.18  67 gikkylekveradv..lllv 84 
                    ++  e+v+++ v   +l+
  MMETSP0890-20130614|38476_1 127 IADQCKEQVKQSAVshCVLL 146
                  33445666655544333333 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00049
                  EEEE--TT---HHHHHHHHCSTCTE CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgekaak 26 
                  + ++G p +GK+++i+a+ ++++  
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRH 357
                  6799**************9643222 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019     0.095      23      44 ..     332     351 ..     315     352 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00019
    PF13555.1  23 gkntlltGasGsGKSTllDAiq 44 
                  g   ll G+ GsGK++++ Ai+
  MMETSP0890-20130614|38476_1 332 G--ILLYGPPGSGKTSIIKAIA 351
                  4..89*************9985 PP

>> PF04670.7  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013     0.068       2      33 ..     333     363 ..     332     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00013
    PF04670.7   2 lLLmGksgsGKtSmrsiiFsnylardtlrLga 33 
                  +LL G+ gsGKtS+ + i ++++  ++++L  
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQR-HIITLPL 363
                  89****************998764.4555554 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         2     1e+03     102     133 ..      58      89 ..      49     105 .. 0.79
   2 ?   10.0   0.0   0.00084      0.43       3      26 ..     333     356 ..     332     379 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 2
    PF05729.7 102 ekqpvrtlLselirkkllpeasllltvrpdal 133
                  + ++ ++++ +++++ + +++++l+ +r +++
  MMETSP0890-20130614|38476_1  58 TDNSGENVIGGWFSQLYQQGTHILINSRCTNV 89 
                  45677899999****9999*******999888 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00084
    PF05729.7   3 vilqGeaGsGKTtLlqklasawak 26 
                  ++l G++GsGKT  ++ +a++ ++
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQR 356
                  6899************99998765 PP

>> PF01695.12  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002       0.1      49      74 ..     332     357 ..     328     380 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0002
   PF01695.12  49 nlvllGpsGvGKthlAialgveavra 74 
                   ++l Gp+G GKt +  a++++  r+
  MMETSP0890-20130614|38476_1 332 GILLYGPPGSGKTSIIKAIAHKTQRH 357
                  689******************98766 PP

>> PF00308.13  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00057      0.29      37      80 ..     333     376 ..     329     409 .. 0.73
   2 ?   -1.3   0.0       2.5   1.3e+03     103     144 ..     477     524 ..     456     542 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00057
                  EEEE-------HHHHHH---HHHHHSSSS-EEEEEHHHHHHHHH CS
   PF00308.13  37 lfiygevGlGKtHLLqaignevlenapnarvvYltaeeFlkelv 80 
                  +++yg  G GKt +++ai+++++++   + ++ +++++ l +++
  MMETSP0890-20130614|38476_1 333 ILLYGPPGSGKTSIIKAIAHKTQRHIITLPLSRIQTNNQLMNAM 376
                  689********************999888888777765443333 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.5
                  EE-GGGG------HHH...HHHHHHHH...HT---EEEEE-SS-TTT- CS
   PF00308.13 103 iDDiqflakkektqee...lfhifnal...leenkqivlssDraPkel 144
                  +DDi  l + +k+ +    l  i+nal   +++  +iv+ +  +P+ l
  MMETSP0890-20130614|38476_1 477 VDDISPLLQANKSMTDvldLSGILNALdgiVDSPGRIVIMTSNHPELL 524
                  555554433333332201123344443222666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       584  (0.042715); expected 273.4 (0.02)
Passed bias filter:                      434  (0.0317437); expected 273.4 (0.02)
Passed Vit filter:                        88  (0.00643651); expected 13.7 (0.001)
Passed Fwd filter:                        27  (0.00197484); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.11u 0.41s 00:00:01.52 Elapsed: 00:00:01.15
# Mc/sec: 1297.34
//
Query:       MMETSP0890-20130614|38481_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.5e-155  516.2   0.0   8.4e-155  515.8   0.0    1.1  1  PF09418.5  Protein of unknown function (DUF2009)
    1.6e-06   27.7   0.0    5.7e-06   25.9   0.0    2.0  2  PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    0.00037   20.0   0.0     0.0012   18.4   0.0    1.8  2  PF02518.21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
     0.0047   16.6   1.5        1.1    9.0   0.1    3.3  3  PF00424.13 REV protein (anti-repression trans-activator protein)


Domain annotation for each model (and alignments):
>> PF09418.5  Protein of unknown function (DUF2009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.8   0.0  2.5e-158  8.4e-155       1     433 [.     294     736 .]     294     736 .] 0.95

  Alignments for each domain:
  == domain 1    score: 515.8 bits;  conditional E-value: 2.5e-158
    PF09418.5   1 erakyiPlrLtkeerkllrLleaalevseytdkvDilsv.kskakriveqlkelcsvlsglvvaldlkkgqklleekdfk.dnaeffqevfeigrrykimnPdklrteygkllylvqDsvleevkealgfklvkpiktvyefleekealalledkllelaiaeisp.egktrneiqraikekeeaveklakkysssklskeeveqalyslaDanaylrenrepvekllelleeffspeaaeeafslaieeGe.nGarLshnhkkqyayvlqslslWkeilremfklWlladedllneeekyelsstgqGlnrvqkcPnvykaieevlqetkk......kleeWvGssvihLGDdavPnallfiDkytqvsriliPlvkvlkeidklakedeelkayikeefgsveelkkaiLrDffrhafdGsGaDnfydaGsCiDGrLtsaW 433
                  er+kyiPlrL+++erk lrL+eaa++vs y d++D++++ k+ a+r++ ql++++++l+g+++a+d + g +l +e +f+ + ++ + ++fei+rryki+nP+k+rteyg+l+y++qD++++e+++alg++++ p+ktvy+ l+e + l+ll+d+l++ a+ e+ p ++k+r++iq++i +k++av+ l ++y+  +ls +++e +l s++D+++yl++ r p++  l+ l+++f p ++++  slai+    +G+rLsh+h++qy +++qsl lW+ i+++mf+lW la++dll++++ y+l++tgqGl+rvq+cP+ y a  ++l++++       ++ +WvGss++h+GD++vPnal+f+Dky+qv+ril Pl++vl++  +l  +d++++a i++++ sv++ k  +L+DffrhafdGsGaDnfydaGsC+DGrLtsaW
  MMETSP0890-20130614|38481_1 294 ERSKYIPLRLSYQERKYLRLIEAAVKVSGYIDRIDTANAaKRPARRKQLQLQGIAAILAGIITAIDPERGTALTQEPEFSiQDNKRLARAFEITRRYKILNPEKMRTEYGQLIYFLQDAANPEIAQALGLDIIIPVKTVYTLLDECDGLDLLDDPLIPDATCEVLPdKNKSRAQIQQKINRKNKAVQMLKHRYAIGRLSPDHIELCLCSICDNESYLNSSRLPIDLTLAALRTHFAPIQNNNYPSLAISDDDgSGSRLSHSHQRQYRFAEQSLALWRDIVDDMFRLWHLAEADLLSGDSPYSLRDTGQGLQRVQSCPRTYAATVSILTDARAaarsnsNSSAWVGSSMVHMGDHNVPNALTFLDKYAQVARILRPLMTVLRRSIELCDQDKSIHALINAKYSSVQNYKIQVLADFFRHAFDGSGADNFYDAGSCVDGRLTSAW 736
                  69**********************************987366789999*******************************845567899****************************************************************************9725799*****************************************************************************8754269************************************************************************988751111113458****************************************999********************************************************** PP

>> PF13589.1  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.7e-09   5.7e-06       6     100 ..      43     163 ..      37     186 .. 0.79
   2 ?   -3.1   0.0       1.5   5.2e+03      33      46 ..     430     443 ..     418     446 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.7e-09
    PF13589.1   6 AiaelvdNsldAdatn............vkisidedkkekseisieDnGkGmskeelvn.alklgrsskdeekeekt..............lGr..kGiGmklAslklgrkvtviskkegekst 100
                  ++ el+ N+l A  t+            v+i + ++ ++   +++ D G Gm+  +l n  + +g s+ d+   e+               +G+   G+G  lA++ +g+ ++v +k++++++ 
  MMETSP0890-20130614|38481_1  43 VLRELCSNALHALDTRffgkgatrswcrVEIGLARR-EDGMWLAVRDSGCGMTRGDLANrLMAPGVSRVDKGD-ENEwrtalekrdaltlaFGQrpLGVG-LLAAFAIGDVIKVCTKNNDDDTY 163
                  578********9988899999999998888888886.57899*****************88888888766432.222355778888999997774479**.89**************9999874 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.5
    PF13589.1  33 kseisieDnGkGms 46 
                  k+ +++ D ++G++
  MMETSP0890-20130614|38481_1 430 KTVYTLLDECDGLD 443
                  368999******97 PP

>> PF02518.21  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.5e-07    0.0012       9      60 ..      43     105 ..      41     122 .. 0.87
   2 ?   -3.5   0.0       2.3   7.7e+03      43      82 ..     597     607 ..     589     625 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.5e-07
                  HHHHHHHHHHHHHHHH..........SEEEEEEEEECTCEEEEEEE-----THHHHH.HHCST CS
   PF02518.21   9 ivselvdNavkatees..........geievrvkreegelvieVeDnGiGipeedle.rvfep 60 
                  +++el++Na+ a +++           ++e+ + r e+  ++ V+D+G+G+++ dl  r++ p
  MMETSP0890-20130614|38481_1  43 VLRELCSNALHALDTRffgkgatrswCRVEIGLARREDGMWLAVRDSGCGMTRGDLAnRLMAP 105
                  799**************************************************6654044444 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.3
                  EE-----THHHHHHHCSTTTCCSCSSGGGTT----THHHH CS
   PF02518.21  43 eDnGiGipeedlervfepffqtdddsrkvggtGlGlsivk 82 
                  +D+G+G+++                             v+
  MMETSP0890-20130614|38481_1 597 RDTGQGLQR-----------------------------VQ 607
                  566666654.............................33 PP

>> PF00424.13  REV protein (anti-repression trans-activator protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.011        39      20      56 ..     191     227 ..     183     253 .. 0.84
   2 ?   -0.5   0.3      0.31   1.1e+03      23      49 ..     274     298 ..     272     303 .. 0.67
   3 !    9.0   0.1   0.00033       1.1       9      72 ..     306     368 ..     301     382 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.011
   PF00424.13  20 LyqsnPyPqeeGtarqRrnrRrRwrqrqkqilalaer 56 
                  L  +n +P  +Gt  + r +  +w q+ ++++ l + 
  MMETSP0890-20130614|38481_1 191 LCDTNYFPRAQGTIVAIRIKAGKWTQQIQKVEILQGI 227
                  7789***********************9999887654 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.31
   PF00424.13  23 snPyPqeeGtarqRrnrRrRwrqrqkq 49 
                  + P P+++  ++    rRr +r+r k 
  MMETSP0890-20130614|38481_1 274 TAPIPNQD--KEHLSSRRRSYRERSKY 298
                  78999966..45555666667776665 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00033
   PF00424.13   9 elrralrliklLyqsnPyPqeeGtarqRrnrRrRwrqrqkqilalaerilstpldrpldepldl 72 
                  ++r+ lrli+   + + y ++  ta++ ++  rR + + + i a+   i++ + d++  ++l +
  MMETSP0890-20130614|38481_1 306 QERKYLRLIEAAVKVSGYIDRIDTANAAKRPARRKQLQLQGIAAILAGIITAI-DPERGTALTQ 368
                  579*****************999******999999999999999988888876.6665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.39s 00:00:01.50 Elapsed: 00:00:01.39
# Mc/sec: 1268.86
//
Query:       MMETSP0890-20130614|38482_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.37s 00:00:00.85 Elapsed: 00:00:00.76
# Mc/sec: 693.68
//
Query:       MMETSP0890-20130614|38479_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-36  123.5   0.0    2.4e-19   69.5   0.0    2.5  3  PF01450.14 Acetohydroxy acid isomeroreductase, catalytic domain
    2.4e-35  121.2   0.0    4.2e-35  120.4   0.0    1.3  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
  ------ inclusion threshold ------
      0.041   14.1   0.0       0.12   12.6   0.0    1.9  1  PF03807.12 NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> PF01450.14  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         2   9.3e+03      43      68 ..     123     148 ..     122     156 .. 0.66
   2 !   51.4   0.0     2e-17   9.1e-14       2     139 ..     245     380 ..     244     386 .. 0.79
   3 !   69.5   0.0   5.3e-23   2.4e-19      18     131 ..     396     509 ..     391     514 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2
                  HHTHHHHHTTHHHHHH---HHHHTTS CS
   PF01450.14  43 fevlhelklivdliaekglsemndni 68 
                  fe+++e +l+  li     ++++++i
  MMETSP0890-20130614|38479_1 123 FETIKESDLVILLISDAAQAKLYKEI 148
                  67777777777777766666655555 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 2e-17
                  HHHHHHHH-------------THHHHHHHHHH----HHHHHHHTHHH.HHTTHHHHHH---HHHHTTS-HHHH---TTTHHHHH...HHHHHTHHHHHH------HHHHHHHHH-THH---GGGGS-S------TT-SS CS
   PF01450.14   2 eeEvksDLfGEqaiLcGglqalikagfevLveaGyspeiayfevlhe.lklivdliaekglsemndniSdTAeyGsllfapriieatkilmkeilkeiqngalakeslleneldnpelekvreelreheiekvgkklrk 139
                  ++E+ksD++GE++iL+Gg++++++a f    ++     +a+  +++  +  i++ i +kg+++++++  d A+   ++     +  +k+ ++ei++e+ +g+++++ +++   d+ e +    +++ +  +++g+++r+
  MMETSP0890-20130614|38479_1 245 TDEYKSDIYGERGILLGGVHGMVEALFRRYLAQSGDAASAFRRSCESiTGAIAPAISKKGIKQLYQDLDDQAKNEFRTAYAASYLPSKEILQEIYDEVASGNEIRSVIMH--GDRLEKYP-IGKIDGTYTWTIGESVRD 380
                  68*************************8766666678899**999997889**********************9888888877778888889999999999999995443..22222222.234555556666666665 PP

  == domain 3    score: 69.5 bits;  conditional E-value: 5.3e-23
                  -----THHHHHHHHHH----.HHHHHHHTHHHHHTTHHHHHH---HHHHTTS-HHHH---TTTHHHHH...HHHHHTHHHHHH------HHHHHHHHH-TH..H---GGGGS-S--- CS
   PF01450.14  18 GglqalikagfevLveaGys.peiayfevlhelklivdliaekglsemndniSdTAeyGsllfapriieatkilmkeilkeiqngalakeslleneldnpe..lekvreelreheie 131
                  G+  a++ a+++vL ea +s  ei++++v+++++++ + ++ kg+++m+dn+S TA++G++++apr++   +   + ++++i++ga   esl+  +l+np+  + +v++elr+ +++
  MMETSP0890-20130614|38479_1 396 GVYVAMMMAQIDVLQEARHSyTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSRTARLGARKWAPRFD---YLIEQLAFTAIDSGATLDESLIDDFLNNPVhdAVAVCAELRPPVDI 509
                  666679999***********9***********************************************...4455779**********************98888999999987765 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   9.2e-39   4.2e-35       6     161 ..      65     236 ..      62     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 120.4 bits;  conditional E-value: 9.2e-39
                  -EEEE-------HHHHHHHH-....---EEE------HHHHHHHH---EE-.....-HHHHHHT-SEEEE-S-GGG---HHHHHTGGG-----EEEE----TT.TTTSS..---TTSEEEEEEES----HHHHHHH---.....---EEEEEEE-----HHHHHHHHH----- CS
    PF07991.7   6 kiaviGyGsqGhaqalnlrds....gldvvvglregsksvekakkdgfevl.....tveeavkkadvvmiliPDelqkevyekeiepnlkegaalafahGfni.hfgli..kppkdvdvvmvAPkgpGhlvreeykegk.....GvpaliaveqdasgkakelalayakgiGg 161
                  ki viG+Gsq+ aqa+nl++s     ++v +glr++s+s+++a++ gf+       ++ e +k++d+v++li D +q+++y kei + +k ga+l  +hGf + h + i  k p+d++v++vAPkg G  vr+ y++gk     G+ + ++++qd++gka+++al +  +iG+
  MMETSP0890-20130614|38479_1  65 KIGVIGWGSQAPAQAQNLKESlegtSIQVKIGLRRDSTSWSSAESVGFTEEdgglgEMFETIKESDLVILLISDAAQAKLY-KEIFQAMKPGATLGLSHGFLLgHLDSIgeKFPDDINVILVAPKGMGPSVRRLYEQGKsvngaGINSSFGIHQDKTGKATDIALGWGIAIGS 236
                  89******************86644579********************965222226889*********************.99*****************8755566644889*********************98752222278899**********************97 PP

>> PF03807.12  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.6e-05      0.12       1      81 [.      65     148 ..      65     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.6e-05
   PF03807.12   1 kigiiGaGnigealakglaaaga.qkheviiaasrspekaeelaeelg....vkvtavsneeaaeeadvvilavkpedveevlael 81 
                  kig+iG G+++ a a++l ++ + +  +v i+ +r+  + +  ae++g     +  + +  e ++e+d+vil +  ++ +++ +e+
  MMETSP0890-20130614|38479_1  65 KIGVIGWGSQAPAQAQNLKESLEgTSIQVKIGLRRDSTSWS-SAESVGfteeDGGLG-EMFETIKESDLVILLISDAAQAKLYKEI 148
                  7*****************999778******99777777665.558888666533344.8999999********9999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       427  (0.0312317); expected 273.4 (0.02)
Passed bias filter:                      415  (0.030354); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:01.34
# Mc/sec: 935.29
//
Query:       MMETSP0890-20130614|38486_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-17   60.9   0.0    1.4e-16   60.2   0.0    1.4  1  PF00534.15 Glycosyl transferases group 1
    9.3e-09   35.4   0.0    1.3e-08   34.9   0.0    1.2  1  PF13692.1  Glycosyl transferases group 1
    0.00099   19.2   0.2     0.0026   17.8   0.0    1.7  2  PF13524.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   3.2e-20   1.4e-16      45     159 ..       4     137 ..       1     149 [. 0.78

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 3.2e-20
                  GGGEEEEE----B-HHHHHHHHHH---EE.....E-----HHH...HHHHHTTECEEEE--SSB---HHHHHHHH----EEEE-TTBCCGGG-SSG...............GGEE-TT-HHHHHHHHHHHHH-H CS
   PF00534.15  45 npnlklvivGdgeeekelkklaeelelsd.....nvifvgevpredleelyrnadifvlpsrsEgfGivllEAmaaglpviasnvggpaeivkdgv..............tGllvkpkdaealaeaiekllkde 159
                  + ++ lvi+Gdg+ ++ l+k+ae+l  +d     +v+f+g vp+ +l++lyr+a++f+  srsE fG++++EA+a+g +v     + + e+  +                +  l+++ +a+a +ea++ l++++
  MMETSP0890-20130614|38486_1   4 ELDVWLVIAGDGPAREGLEKRAEQLFTNDknapgRVTFLGAVPNARLPSLYRAANVFLTCSRSETFGLTVTEALACGACVALPRCPVFDELYGHVLpeswrydaddkcggHLALIDAAQAAASIEASAWLEANP 137
                  56899*****9999999999998875554222227******************************************999877788888877777777777777777666666667777777777777776665 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.8e-12   1.3e-08      34     108 ..       6      94 ..       2     131 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2.8e-12
    PF13692.1  34 dvelviiGkgpd......elarl.....lep.nveflgfve..elaellasadvglaplrfgeglplKlleylaaGlPvvasdig.aegl 108
                  dv lvi+G gp+      + ++l     ++p +v+flg+v+  +l++l+++a+v+l  +r +e+++l + e+la+G +v   +++ +++l
  MMETSP0890-20130614|38486_1   6 DVWLVIAGDGPAreglekRAEQLftndkNAPgRVTFLGAVPnaRLPSLYRAANVFLTCSR-SETFGLTVTEALACGACVALPRCPvFDEL 94 
                  567999***99865443324444877665559********5559************9897.688***************99888424444 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   7.3e+03      85      91 ..      23      29 ..      18      36 .. 0.50
   2 !   17.8   0.0   5.6e-07    0.0026       1      37 [.      59      95 ..      59     101 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.6
    PF13524.1 85 hraeqll 91
                 +raeql+
  MMETSP0890-20130614|38486_1 23 KRAEQLF 29
                 3444432 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.6e-07
    PF13524.1  1 ivLnpsrsespnlrlfEaaacGtpvvtddtsgleelf 37
                 ++L +srse++ l + Ea+acG++v   + + ++el+
  MMETSP0890-20130614|38486_1 59 VFLTCSRSETFGLTVTEALACGACVALPRCPVFDELY 95
                 6899*********************999989988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 485.26
//
Query:       MMETSP0890-20130614|38485_1  [L=1259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.5e-105  351.0   0.2   9.6e-105  350.7   0.1    1.1  1  PF04547.7 Calcium-activated chloride channel
  ------ inclusion threshold ------
      0.096   12.6   0.8       0.37   10.7   0.0    2.4  2  PF06024.7 Nucleopolyhedrovirus protein of unknown function (DUF912)


Domain annotation for each model (and alignments):
>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.7   0.1  1.4e-108  9.6e-105       1     451 [.     403     872 ..     403     873 .. 0.88

  Alignments for each domain:
  == domain 1    score: 350.7 bits;  conditional E-value: 1.4e-108
    PF04547.7   1 irdyFGekialYFawlgfytksllypavlGlilfllglsadqtfdnil.....tvvfalfnvlwatlflelWkrreaelaykWgtldveeeqeeprpqFkgekk....ridpitgeeepyyppwkrllrrlvslpvvllcivlvfllmlgvfelrelvseikeakekptlasflpkilnavlitilnevYkklAkwltdlEnhrtqseyensliiKvflfqfvnsylslfyiaFfkk.....lrqeecksdlerLkeqlatllitkqllqnitevllPylkerlrkv....kvkekkeeksed..................esekeeeekesleqaekeselqtyevsgtfddylemviqfGyvvLFsaafPlapllalinniieirsdafklltelrRpvpqraesIGqWqkilellgvlavitNafliaftsdgqlqrllndlslaarlllvvvlehvvlllkyliavlipdipewvreelkree 451
                  ir+yFGekia+YFawlgfy   l+ypa+ Gli+ l+ l+ + t+d+++      +++al  v+w++++ e W  +++  a+kWgtl++e eqe  rpqF+g+      ri+p+t+++e +ypp kr+  +  sl++++++i++++l+++++fe++ l++ +         a+    +l+avli+il+e Y ++A+  +d En+rtq+eyen+l++K+flf+++n+y+ l ++a+fk+     ++ ++ +++l +Lk  l++++ t++ l  i ++    + + ++ v    k k+       d                  +++++ +  ++ +++e+e el+ ye  gtfddy e+v+q+G+v++F   + l+p l ++  +++ir+da+kl  ++rRp p  aes+G W   +e +gvlav  Na++++ft     +r + + s  ++ll+++vle ++l+lk++++  i d+p++++++++r++
  MMETSP0890-20130614|38485_1 403 IRSYFGEKIAFYFAWLGFYGYYLIYPALGGLICTLYLLF-SGTSDEAIgihpeQIIMALALVVWSAFYKESWDIESQYCALKWGTLNFE-EQEVDRPQFHGDPDgeprRISPVTNQKETFYPPEKRQQTQRNSLFIIIFFIIALILVIVLIFEIEYLMYLQGG---FLASATGAVGVLQAVLIQILSEQYGNFANARNDKENYRTQTEYENALVLKKFLFEIFNNYSALAITAYFKGvyficTSGTYKQNCLGDLKLLLISIFGTRFALA-IYSAYEERVNRIIELVfgptKNKDDDA----DsdddsddenddleggginKKKSSANAISETQRFETELELKAYE--GTFDDYAEIVLQMGLVSMFTLGWYLVPTLGVLEVLLQIRVDAYKLAAQTRRPDPAPAESVGSWGVLMESMGVLAVYANAGIVVFT-----TRSFSNYSFLEKLLIFFVLEQIALVLKIVTHASIIDVPTDLSDKKRRND 872
                  9**************************************.777776653333378*********************************9.***********9889999***********************************************99995544...44555788899************************************************************9999555555555****************9993.333333333333333322112222222....122346666666666666544488899999**************..9************************************************************************************.....45555558889***********************************986 PP

>> PF06024.7  Nucleopolyhedrovirus protein of unknown function (DUF912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.4e-05      0.37      51      86 ..     524     559 ..     503     562 .. 0.77
   2 ?   -2.4   0.1      0.64   4.4e+03      40      51 ..     704     715 ..     686     758 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.4e-05
    PF06024.7  51 eeskaekaqatnillisllavlcvlvllyviyYFvi 86 
                  e+++++++++  i+++ ++a++ v+vl++ i Y + 
  MMETSP0890-20130614|38485_1 524 EKRQQTQRNSLFIIIFFIIALILVIVLIFEIEYLMY 559
                  23346788899999999************9999765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.64
    PF06024.7  40 ksaapknditee 51 
                  ++  +   i+++
  MMETSP0890-20130614|38485_1 704 NDDLEGGGINKK 715
                  111111122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       862  (0.0630486); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        43  (0.00314511); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.85u 0.40s 00:00:02.25 Elapsed: 00:00:01.25
# Mc/sec: 2413.61
//
Query:       MMETSP0890-20130614|38487_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   60.1   0.7      2e-16   59.6   0.5    1.2  1  PF11325.3 Domain of unknown function (DUF3127)


Domain annotation for each model (and alignments):
>> PF11325.3  Domain of unknown function (DUF3127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.5   1.4e-20     2e-16       1      84 []      39     122 ..      39     122 .. 0.90

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 1.4e-20
    PF11325.3   1 eikgklikvleetqgvgknGfkkrelvleteeqypkkialelvqdkidlldslkvGdevkvsfdlegReyk..ekyfnsvkawkve 84 
                  ei+g  + ++++ +++  +G  kre+v++t e+y ++i+++l++d+++l+d l + ++v vsf+++g++ +  ++yfn+++aw+v+
  MMETSP0890-20130614|38487_1  39 EIEGS-LIEINDIESFN-SGNSKREFVIRTAETYAQDIKFDLWNDRTNLVDDLDIDTRVIVSFNIKGKKNEqyNRYFNNLNAWRVQ 122
                  67788.44566666665.788************************************************99999**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       558  (0.0408133); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.88
# Mc/sec: 490.16
//
Query:       MMETSP0890-20130614|38489_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       737  (0.0539058); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 1133.66
//
Query:       MMETSP0890-20130614|38488_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-05   21.9   0.1    0.00025   20.3   0.1    1.9  1  PF01740.16 STAS domain
  ------ inclusion threshold ------
       0.03   13.5   0.0      0.071   12.3   0.0    1.5  1  PF07126.7  Protein of unknown function (DUF1379)


Domain annotation for each model (and alignments):
>> PF01740.16  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   3.6e-08   0.00025       8      87 ..      96     171 ..      91     208 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.6e-08
                  TTEEEEEEE--BSHHHHHHHHHHHHHHHHHS-........--EEEEE----.S-B-----------HHHHHT----EEEES CS
   PF01740.16   8 egililrldgpldfanaesfkekleravgeepervekkislrslildlsav.sfiDssGvraLkeilkelkrrgvevvlvn 87 
                  e+i+i+ + g ++f++a+++ + + + +  ++        lr+l+ld+s      D+++++a+++il    ++  +v+++ 
  MMETSP0890-20130614|38488_1  96 ESITIIDMVGYIFFGSAQELVDLVLDRANIQS-----PPYLRHLVLDVSRCfAQFDVTAIAAFEKILAIAHAKEFRVAFAP 171
                  5789**************************96.....899*********8659**************99999999999875 PP

>> PF07126.7  Protein of unknown function (DUF1379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05     0.071      51     129 ..     301     384 ..     289     391 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
    PF07126.7  51 eaqkvelaLnalaakrflkPvmpkSWfFess...desvvpeegelve..lkskkeegkflvveageqaslclllseelqLsgsk 129
                  e +++  aL    a +f k +m kSW+  s    +     e ++ ++   +    +++    +++ +  +c+l++  + L ++ 
  MMETSP0890-20130614|38488_1 301 ESSSALTALSDASARFFKKKQMLKSWLNASAvplQFIGLNEDEKFIQilANLVSISHEASLTDNDGDRVICMLVDGRVRLLNTD 384
                  334444566667899************99986544455678889999753444556777889*************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       484  (0.0354008); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.37s 00:00:01.17 Elapsed: 00:00:00.78
# Mc/sec: 1437.81
//
Query:       MMETSP0890-20130614|38490_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-07   28.9   0.0    8.7e-07   28.0   0.0    1.3  1  PF00240.18 Ubiquitin family


Domain annotation for each model (and alignments):
>> PF00240.18  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.3e-11   8.7e-07       4      65 ..      43     109 ..      40     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 6.3e-11
                  SSEEEEEEECTTSBHHHHHHHHHH..HHTS-GGGEEEEE---BE.TTTSBTTTTTT-TTE..EEEEE CS
   PF00240.18   4 sgktitlevepsdtvselKekiee..kegipvdqqrLiysGkvL.eDdrtlseyniqdgs..tlhlv 65 
                  +g+t+++++  +dt+  lK++++e  +e+ +++ qrLiy Gk+  +D+ +l+e   + +s  t hlv
  MMETSP0890-20130614|38490_1  43 GGSTVEMDMHITDTIGVLKNRLCEslAEKPAPSEQRLIYCGKICrDDQVCLREVLRDLESpqTFHLV 109
                  4679*******************944466***************99999999988777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.39s 00:00:01.10 Elapsed: 00:00:01.04
# Mc/sec: 923.98
//
Query:       MMETSP0890-20130614|38491_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   31.3   0.0     0.0016   18.5   0.0    2.9  3  PF00169.24 PH domain


Domain annotation for each model (and alignments):
>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   6.7e-05      0.91       5      52 ..       5      50 ..       2      66 .. 0.82
   2 !   18.5   0.0   1.2e-07    0.0016       3     103 ..     124     254 ..     122     255 .. 0.85
   3 ?   -3.0   0.0      0.56   7.7e+03      49      70 ..     272     289 ..     262     339 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.7e-05
                 EEEEEEETSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE CS
   PF00169.24  5 GyllkksellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc 52
                 G l k+s    +w+ r f L +  L+y+++++  +++ ++ +ip  ++
  MMETSP0890-20130614|38491_1  5 GVLEKRS-ADGSWRARAFELSERELIYMEQKSG-KKSLKRACIPSMNL 50
                 7788888.***********************95.77777777776666 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.2e-07
                  BEEEEEEEE................TSSSCEEEEEEEEET.TEEEEESSSSTTCECSECEEEECGGEEEEEEEETTS.....S..C...TTSSSSEEEEEETTT......CEEEEEESSHHHHHHHHHHHHHHH CS
   PF00169.24   3 keGyllkks................ellktwkkryfvLts.nyLlyfksskkksykapkgsiplndctvkkasstkf.....a..l...qkesnnyfeitfkdv......esyllsaeseeerkrWvqalknll 103
                  ++G llkk+                +++++w +r f+L      ++++++    +++p+g++ l+  ++ +a++        a  l   + e++ yfe++++          + + a    ++ +W+ al+ ++
  MMETSP0890-20130614|38491_1 124 ISGPLLKKGgsrgsfftktrrpslsGGRRNWNEREFFLDFeRACFEYREKG---DEEPRGIVRLRPGSIVQAPDEIRlrgrhAepLrdgTDEDPLYFELKNTLDsenrprDVFAMRALKRRDFDEWILALNACI 254
                  5677888888888888888999999*************7647778888888...8*******************8766654415525679999******99999999999********************9987 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.56
                  CGGE.EEEEEEETTSSCTTSSSS CS
   PF00169.24  49 lndc.tvkkasstkfalqkesnn 70 
                  l +c +++k+s++++     ++ 
  MMETSP0890-20130614|38491_1 272 LAQCtSLEKVSDQED-----KRP 289
                  566667777777653.....222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       583  (0.0426419); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:01.02
# Mc/sec: 1266.31
//
Query:       MMETSP0890-20130614|38493_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   24.2   1.5    2.8e-05   23.9   1.0    1.2  1  PF04568.7 Mitochondrial ATPase inhibitor, IATP
  ------ inclusion threshold ------
      0.099   12.2   0.2       0.12   11.9   0.1    1.1  1  PF06019.6 Phage GP30.8 protein


Domain annotation for each model (and alignments):
>> PF04568.7  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.0   4.1e-09   2.8e-05      50      96 ..      22      65 ..       6      72 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.1e-09
    PF04568.7 50 aggaFgkrEaAqEeeyfrkkekeqLakLkekleeeikhhkkeieele 96
                 a++ F+++E  +E+ yfrk+ + ++akL ek++    +++ e+ +l 
  MMETSP0890-20130614|38493_1 22 ARDVFKEKEMGEENLYFRKEDQARIAKLLEKMKA---KEEGELVNLK 65
                 799****************************999...4444554444 PP

>> PF06019.6  Phage GP30.8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.7e-05      0.12      75     112 ..      21      57 ..      14      67 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
    PF06019.6  75 irsktyedeelgesedvvwyetarnraesliekikkkg 112
                  i   +++++e+ge e++ + ++ + r  +l+ek+k+k 
  MMETSP0890-20130614|38493_1  21 IARDVFKEKEMGE-ENLYFRKEDQARIAKLLEKMKAKE 57 
                  66678999*****.888888899************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.44s 00:00:00.79 Elapsed: 00:00:00.71
# Mc/sec: 297.01
//
Query:       MMETSP0890-20130614|38492_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00028   20.5   6.2    0.00079   19.0   4.3    1.8  1  PF07716.10 Basic region leucine zipper
    0.00039   20.0   0.5     0.0015   18.1   0.0    2.2  2  PF00989.19 PAS fold
  ------ inclusion threshold ------
        0.1   12.9   0.0       0.41   10.9   0.0    2.1  2  PF13426.1  PAS domain


Domain annotation for each model (and alignments):
>> PF07716.10  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   4.3   1.7e-07   0.00079       1      40 [.      66     105 ..      66     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.7e-07
   PF07716.10   1 kddeyrerRrrNreAArrsRekkkakeeeleervkeLeee 40 
                  +d+++r +R  Nr++A  sR +kk+  ee+ ++  +L++ 
  MMETSP0890-20130614|38492_1  66 QDEKKRLKRAANRRSACTSRVRKKQFVEETTQQNHRLQKY 105
                  589**********************************986 PP

>> PF00989.19  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.58   2.6e+03      64      80 ..      57      73 ..      27     101 .. 0.55
   2 !   18.1   0.0   3.3e-07    0.0015       9      69 ..     110     172 ..     103     195 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.58
                 HHHHHH--ECEEEEECC CS
   PF00989.19 64 qlleqgeesrageisfk 80
                 +++++ + ++++++++k
  MMETSP0890-20130614|38492_1 57 KYIREEQIRQDEKKRLK 73
                 33333333333333333 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.3e-07
                  T--SBEEEES----EEEETHHHHHHH-S-H.HHHS---CCHHCSCCHCC..TCCHHHHHHHHHH CS
   PF00989.19   9 slpdpifvvDedgrilyvNaaaeellGlsr.eevlgkslldliheedda..elaelleqlleqg 69 
                  s+++p++ +De+g i ++ ++  +l++l++ +e+lg  l  l+ e+d a  +  +++ + l ++
  MMETSP0890-20130614|38492_1 110 SAAPPTITIDEKGFIRFATRTCLRLFHLDQaDELLGICLASLFEEDD-AlkIWLDRVNTELDTS 172
                  67899*************************99999999997776655.4465555555555555 PP

>> PF13426.1  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.1e-05      0.41       5      65 ..     116     178 ..     114     209 .. 0.78
   2 ?   -3.9   0.0         3   1.4e+04      62      86 ..     280     308 ..     273     309 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.1e-05
    PF13426.1   5 lildpdgtilfaNeaalrllGy.treevlgksirdlfpededeeav.alleraleaggeveve 65 
                  + +d++g i+fa +  lrl+++ +++e+lg  +  lf ed+  ++  ++++ +l++ +e++ +
  MMETSP0890-20130614|38492_1 116 ITIDEKGFIRFATRTCLRLFHLdQADELLGICLASLFEEDDALKIWlDRVNTELDTSNEYDRQ 178
                  6799******************6689***********98887665337777777777766654 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3
    PF13426.1  62 vevelelrrkd....geefpvevtvtpvr 86 
                  +e ++++ +kd    g+ + + ++++pv 
  MMETSP0890-20130614|38492_1 280 IESTMSCEKKDdddfGSARELVLSIRPVE 308
                  56677888888555556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       972  (0.0710942); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.40s 00:00:01.29 Elapsed: 00:00:00.84
# Mc/sec: 1452.08
//
Query:       MMETSP0890-20130614|38498_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-27   94.4   0.0    4.8e-27   94.1   0.0    1.1  1  PF02826.14 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
    0.00092   19.0   0.0     0.0012   18.6   0.0    1.1  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase


Domain annotation for each model (and alignments):
>> PF02826.14  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0     7e-31   4.8e-27      48     176 ..       2     146 ..       1     148 [. 0.80

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 7e-31
                  --HHHHHHHH---EEEE--SS--.......HHHH---EE--CCCCCCC-SEEEE----STTTTT-B-HHHHCCS-TT-EEEE---GGGB-HHHHHHHHHH-TT-EEEES--TTH--GHH..........HHHHCSTT..EEE--S CS
   PF02826.14  48 Gqavakrlkafgmkvlaydrskkkee....eeeelgaevvsleellaesDvvslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeEplped..........spllelpn..viltPH 176
                  G++va++l+afg +vla+ r+ k+++    + + + ++  ++ +ll ++++v+++lpl p+t +l+n+++la++++gai++N++RG++vde+a++eaL    ia +a Dv+++ p + +          + + +lp+  ++++PH
  MMETSP0890-20130614|38498_1   2 GSRVANVLTAFGTNVLATTRTGKASKkyyvSPAVKIFSGSEIMDLLPRAQIVIVCLPLGPDTSGLLNRKALARLPSGAIVVNVGRGPVVDEAAVYEALTTDSIACYASDVWWNYPKSWQqacnsspakfHDFSTLPRhkILFSPH 146
                  99********************999866543333344667999***********************************************************************6553322222222224444433332777777 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.8e-07    0.0012      13     111 ..       2     103 ..       1     110 [. 0.84

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.8e-07
                  --HHHHHHHH---EEEE--SSHHHHHHHHHTT...EEE-SSHHHHHHHBSEEEE-SSSHHHHHHHHHH.HCCC-----EEEE-S---HHHHHHHHHHHHH-- CS
   PF03446.10  13 Gspmalnllkagyevavynrtkekveelvaeg...akaaesieelvasldvvilmvkagkavdeviegellealekgdilidgstsspedtrelakelkekg 111
                  Gs  a+ l + g +v +  rt ++ ++   +    +   ++i +l+ ++++vi++++ g ++  +++++ l++l +g+i++  +   + d  +++++l+   
  MMETSP0890-20130614|38498_1   2 GSRVANVLTAFGTNVLATTRTGKASKKYYVSPavkIFSGSEIMDLLPRAQIVIVCLPLGPDTSGLLNRKALARLPSGAIVVNVGRGPVVDEAAVYEALTTDS 103
                  78889999999**********9999998877633344455666777777********************9**************999999888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.76
# Mc/sec: 618.01
//
Query:       MMETSP0890-20130614|38496_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      266  (0.0194558); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.96
# Mc/sec: 1310.51
//
Query:       MMETSP0890-20130614|38512_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.12   12.5   0.0    1.1  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.7e-06      0.12      51      84 ..      19      51 ..       1      59 [. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.7e-06
                 CECTSTTEEEEEEEEHHCCCE---GTT-EEEE-- CS
   PF03171.15 51 dvppdpvallvnfgdvllvltngryksvlHrvlp 84
                 + ++ p  ll+ +g++ ++l++g +++++H+v+ 
  MMETSP0890-20130614|38512_1 19 PPSVSP-YLLFQIGEAAQILSGGLLRATPHAVMR 51
                 334444.48999********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       107  (0.00782621); expected 273.4 (0.02)
Passed bias filter:                      103  (0.00753365); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.55
# Mc/sec: 265.78
//
Query:       MMETSP0890-20130614|38506_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-33  115.6   9.7    5.2e-32  111.1   6.7    2.0  1  PF08743.5  Nse4
  ------ inclusion threshold ------
      0.029   14.1   0.8      0.029   14.1   0.5    2.4  2  PF10241.4  Uncharacterized conserved protein
        2.5    8.5   7.4       0.19   12.1   1.0    2.0  2  PF00841.14 Sperm histone P2


Domain annotation for each model (and alignments):
>> PF08743.5  Nse4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   6.7   1.2e-35   5.2e-32       1     295 [.      29     297 ..      29     299 .] 0.87

  Alignments for each domain:
  == domain 1    score: 111.1 bits;  conditional E-value: 1.2e-35
    PF08743.5   1 eerRelrkklrelqkeveenrdellkessdkLeealekanelfknvkqtreavlDaelLvsaadlakkkakkltlgelngidvdeF.vsklisfmgrgteedeeaedsstqreedsdddsgdlldWakLgrlackhvrrppvsgfllGplsvekkerkqrqrrarlrkkeeqevrPeelreke..akkqekteltamcknierilgelqkkaqdave...epvsllkfvinpnsFgqTVeNlFyvSFLvrdGkvkievd.edglplleprkaeeaeeveskeaarhqaVlslDfetWkdlvd 295
                  eerR+lrkk r++ ++v++  +e+++ +s++  e  e  n+lf+nv+ tre+ +D++ Lv + ++a ++ ++l+++      v+++ ++ +++++++  +                     +   W  Lg  ++  ++ +p  +f++Gpl+  + ++k ++rr++   +e++e ++++ ++++  +k++e+ e  ++ + ++r l++l+   +++v+   + v+++++ + p+sF  TVeN+F  SFLv+dGk++i++d + glpl +       ee+++++ ++ q V+ l  ++ k +vd
  MMETSP0890-20130614|38506_1  29 EERRALRKKQRAILDRVNDRHAEMIQLDSNAYAEERESNNKLFENVRFTRELGNDGDNLVAIGTVAVERSSQLNQS------VAQYpANDIMEKLRERYRGC-------------------NGGLWLNLGHDVAGLFKAVPILNFMNGPLEQPQMQKKKAVRRQK--QDEDDEFQATQYETMDygEKNNENVEQRKLEEATNRRLQNLEHVLKTKVAegeDSVDMMNLLVSPRSFHETVENFFDYSFLVKDGKASIKLDpKTGLPLCAL------EEQPEDQLKKFQTVVVLGPQDHKRIVD 297
                  69************************************************************************77......44442344444444333333...................4568**************************88888888899999..9**************9655666666667788889999999998888888778899*************************************9*********......888888888888888888888887776 PP

>> PF10241.4  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   6.3e-06     0.029      15      65 ..      33      83 ..      26      88 .. 0.84
   2 ?    2.4   0.4     0.028   1.3e+02      15      55 ..     174     216 ..     162     224 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.3e-06
    PF10241.4 15 aliakQkqilgrLekknreLlelnalsqarLkevraefaegtrllkemkkD 65
                 al++kQ+ il+r ++ ++e+++l+  + a  +e ++++ e++r  +e+ +D
  MMETSP0890-20130614|38506_1 33 ALRKKQRAILDRVNDRHAEMIQLDSNAYAEERESNNKLFENVRFTRELGND 83
                 6789****************9987766666668999999999998887666 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.028
    PF10241.4  15 aliakQkqilgrLekknreL..lelnalsqarLkevraefaeg 55 
                  +  a+Q ++ +  ek n+ +   +l++  ++rL+++++ ++ +
  MMETSP0890-20130614|38506_1 174 EFQATQYETMDYGEKNNENVeqRKLEEATNRRLQNLEHVLKTK 216
                  5566777777666666665511467888888888887766655 PP

>> PF00841.14  Sperm histone P2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3      0.77   3.5e+03      67      76 ..      31      39 ..       9      51 .. 0.51
   2 ?   12.1   1.0   4.2e-05      0.19       6      63 ..     149     209 ..     146     216 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.77
   PF00841.14 67 rrscrrrrrr 76
                 rr+ r++ +r
  MMETSP0890-20130614|38506_1 31 RRALRKK-QR 39
                 3333322.22 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.2e-05
   PF00841.14   6 vrspsesphqesrqqlegeeqgeeqglspedve..vygrthrGryhyrr.rscsrrrlrri 63 
                  +  p e+p+ ++++ +++++q+e+ ++++ + e  +yg   + + + r+  + + rrl+ +
  MMETSP0890-20130614|38506_1 149 MNGPLEQPQMQKKKAVRRQKQDEDDEFQATQYEtmDYGEKNNENVEQRKlEEATNRRLQNL 209
                  56799**********************9998872256666655555555234677888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1108  (0.0810415); expected 273.4 (0.02)
Passed bias filter:                      461  (0.0337185); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.43s 00:00:01.08 Elapsed: 00:00:00.99
# Mc/sec: 723.75
//
Query:       MMETSP0890-20130614|38516_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       919  (0.0672177); expected 273.4 (0.02)
Passed bias filter:                      411  (0.0300614); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:01.53
# Mc/sec: 209.88
//
Query:       MMETSP0890-20130614|38519_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.5   1.1       0.12   12.5   0.8    1.0  1  PF13408.1 Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> PF13408.1  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8     9e-06      0.12      15      47 ..       1      35 [.       1      36 [] 0.67

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9e-06
    PF13408.1 15 mtrrkrkgkkiy.YrCsnyrkggk.kCdnksiree 47
                 m   +r+g+++y Y  s +r++++ kC+++si +e
  MMETSP0890-20130614|38519_1  1 MGNDTRNGRTYYiYLGSIARTKHInKCTKNSITVE 35
                 55667776666656666666666567*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.38s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 146.22
//
Query:       MMETSP0890-20130614|38524_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   17.5   0.1       0.37   11.3   0.0    2.2  2  PF12681.2 Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> PF12681.2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   2.7e-05      0.37      12     106 ..      56     152 ..      48     154 .. 0.77
   2 !    4.2   0.0    0.0042        58       1      76 [.     197     271 ..     197     282 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
    PF12681.2  12 FYeklLGfevaeeegdfvtlslglalg.sgvrellgldepeapgggg..vhlafevedldalvarlkaaGakvlgepedepwggrefyvrDPdGnlie 106
                  ++e+ LG++ +   +++ t ++g++++  g++++   +++ ++++++   +l +  +   ++  rl+ + a++  ++  e + ++ f+v  P Gn++ 
  MMETSP0890-20130614|38524_1  56 YFEQGLGCTRDPSKPGGSTQTTGTMWAnIGWQQFHLAETAHDEPPQAvrGALGLVLPKAAEACSRLERL-AQLEPSIKVERHDDQRFTVSCPWGNIFH 152
                  45899*******99999888888655547777777777555444444116777778**********998.8877888888888899*********997 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0042
    PF12681.2   1 lpvsdleaaraFYeklLGfevaeeegdfvtlslglalgsgvrellgldepeapggggvhlafevedldalvarlka 76 
                  l++s ++  ++ Y+  LG +v  + +d + + +g+  +  v+++  +d + +   +gvh +   +++ + + rl++
  MMETSP0890-20130614|38524_1 197 LRCSEPHLIAQHYKHFLGQSVYTQ-QDSALVATGTGPTHFVFQFSLPDSEADARMAGVHACVYLDNFSDQYTRLQE 271
                  678888889999999999888776.445566667655555777777777777788999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.65
# Mc/sec: 1220.30
//
Query:       MMETSP0890-20130614|38548_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   62.7   9.2    9.2e-05   21.9   0.1    5.7  5  PF00023.25 Ankyrin repeat
    5.4e-17   61.7   4.2    7.1e-09   35.7   0.3    3.2  3  PF12796.2  Ankyrin repeats (3 copies)
    2.4e-16   59.6   4.5    2.1e-05   24.8   0.0    4.5  5  PF13637.1  Ankyrin repeats (many copies)
      6e-16   57.9   2.8    4.2e-05   23.5   0.1    3.5  3  PF13857.1  Ankyrin repeats (many copies)
    2.7e-11   42.4   7.1    0.00066   19.5   0.0    5.3  5  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.4e-08   0.00012       2      33 .]      73     104 ..      72     104 .. 0.94
   2 !   10.6   0.4   0.00013      0.35       2      30 ..     106     133 ..     105     136 .. 0.80
   3 ?    3.1   0.0     0.031        85       3      11 ..     140     148 ..     139     164 .. 0.77
   4 !   21.9   0.1   3.4e-08   9.2e-05       1      22 [.     169     190 ..     169     198 .. 0.89
   5 !    6.7   0.0    0.0022         6       3      21 ..     206     224 ..     204     229 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.4e-08
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBHT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqdd 33 
                  G+T LH+A+  gn+  ++ Ll+qG  + a+++
  MMETSP0890-20130614|38548_1  73 GWTSLHVASAAGNAGLLRVLLEQGGFVEAVTN 104
                  9***********************99988886 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00013
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlna 30 
                  G+ PLH+Aa +   ++vk Ll++ A+  a
  MMETSP0890-20130614|38548_1 106 GYRPLHIAAAHCA-DCVKILLEAEANALA 133
                  778****877776.********8888666 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.031
                  CBHHHHHHH CS
   PF00023.25   3 fTPLHlAal 11 
                  +TPLHl+ +
  MMETSP0890-20130614|38548_1 140 QTPLHLCTS 148
                  7****9754 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 3.4e-08
                  TSCBHHHHHHHTTHHHHHHHHH CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLl 22 
                  +G TPLH Aal+g+++vv+  l
  MMETSP0890-20130614|38548_1 169 NGLTPLHTAALHGRTQVVREIL 190
                  79*****************988 PP

  == domain 5    score: 6.7 bits;  conditional E-value: 0.0022
                  CBHHHHHHHTTHHHHHHHH CS
   PF00023.25   3 fTPLHlAalrgnlevvklL 21 
                  f++ HlA lr +++v+ lL
  MMETSP0890-20130614|38548_1 206 FSARHLAELRQHTDVINLL 224
                  7899*************99 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.2     4e-12   1.1e-08      26      85 ..      73     131 ..      54     135 .. 0.87
   2 !   35.7   0.3   2.6e-12   7.1e-09      11      79 ..     119     190 ..     118     198 .. 0.88
   3 ?   -0.4   0.0      0.48   1.3e+03      29      46 ..     208     225 ..     191     240 .. 0.62

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 4e-12
    PF12796.2  26 getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                  g t Lh+A++agn   +++Lle+g  v+a ++ g+ pLh+A+  +++++vk+Lle++a+ 
  MMETSP0890-20130614|38548_1  73 GWTSLHVASAAGNAGLLRVLLEQGGFVEAVTNCGYRPLHIAAA-HCADCVKILLEAEANA 131
                  5679**************************************5.669*********9986 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 2.6e-12
    PF12796.2  11 elvklLlekgadvdl.....getpLhlAaeagnleivklLleagadv.nakdkegntpLhlAvrnghlelvklLl 79 
                  ++vk+Lle++a+        ++tpLhl+ +   +e++ +L+++g+++ +a+d +g tpLh A+ +g++ +v+ +l
  MMETSP0890-20130614|38548_1 119 DCVKILLEAEANALAstrvlQQTPLHLCTS---TEAAHALIKRGKQIiQARDINGLTPLHTAALHGRTQVVREIL 190
                  8*********9999888999999****875...79*********98648888*******************8776 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.48
    PF12796.2  29 pLhlAaeagnleivklLl 46 
                  + hlA  ++++++++lL 
  MMETSP0890-20130614|38548_1 208 ARHLAELRQHTDVINLLK 225
                  445555555555555553 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-06     0.011      27      54 .]      66      93 ..      43      93 .. 0.85
   2 !   20.4   0.1   1.8e-07   0.00049       1      44 [.      73     116 ..      73     125 .. 0.89
   3 !    7.2   0.1    0.0024       6.5       2      42 ..     107     147 ..     106     150 .. 0.79
   4 !   24.8   0.0   7.5e-09   2.1e-05      14      51 ..     149     187 ..     141     190 .. 0.89
   5 !   19.3   0.0     4e-07    0.0011       1      53 [.     170     224 ..     170     224 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.9e-06
    PF13637.1 27 inrtdesGntaLhiAalrgnieilklLl 54
                 in  d++G+t Lh+A  +gn  +l+ Ll
  MMETSP0890-20130614|38548_1 66 INEPDAKGWTSLHVASAAGNAGLLRVLL 93
                 9999********************9997 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.8e-07
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalr 44 
                  g+t Lh+a ++g+  l++ Lle+g  + ++ ++G  +LhiAa +
  MMETSP0890-20130614|38548_1  73 GWTSLHVASAAGNAGLLRVLLEQGGFVEAVTNCGYRPLHIAAAH 116
                  6899*******************86667*************986 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0024
    PF13637.1   2 ltaLhyaaisgrlelvklLlekgidinrt.desGntaLhiAa 42 
                  +++Lh aa +++ ++vk Lle  ++  +     + t+Lh++ 
  MMETSP0890-20130614|38548_1 107 YRPLHIAA-AHCADCVKILLEAEANALAStRVLQQTPLHLCT 147
                  68999998.5889*******9988855554677999999986 PP

  == domain 4    score: 24.8 bits;  conditional E-value: 7.5e-09
    PF13637.1  14 lelvklLlekgid.inrtdesGntaLhiAalrgnieilk 51 
                  +e+++ L+++g++ i ++d++G t+Lh Aal+g+ ++++
  MMETSP0890-20130614|38548_1 149 TEAAHALIKRGKQiIQARDINGLTPLHTAALHGRTQVVR 187
                  78999*****99967777******************997 PP

  == domain 5    score: 19.3 bits;  conditional E-value: 4e-07
    PF13637.1   1 gltaLhyaaisgrlelvklLlek.gidinrt.desGntaLhiAalrgnieilklL 53 
                  glt+Lh aa +gr+++v+ +l + + d+  t d + ++a h+A lr++ ++++lL
  MMETSP0890-20130614|38548_1 170 GLTPLHTAALHGRTQVVREILLFaDLDLIITlDHEHFSARHLAELRQHTDVINLL 224
                  689******************66667766668*******************9998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   1.5e-08   4.2e-05       8      56 .]      65     113 ..      59     113 .. 0.89
   2 !   21.0   0.2   9.1e-08   0.00025      12      55 ..     102     145 ..      99     146 .. 0.93
   3 !   21.6   0.0   5.9e-08   0.00016       1      36 [.     155     190 ..     155     197 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.5e-08
    PF13857.1   8 dvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  ++n  d +g t Lh+A  +g++ ++r Ll++g    + +++g ++l++A
  MMETSP0890-20130614|38548_1  65 VINEPDAKGWTSLHVASAAGNAGLLRVLLEQGGFVEAVTNCGYRPLHIA 113
                  5666777777*************************************99 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 9.1e-08
    PF13857.1  12 tdeggntpLhlAakggalevvrlLlapgadlnlrdsdg.ltaldl 55 
                    ++g+ pLh+Aa  +++++v++Ll+++a++ + +    +t+l+l
  MMETSP0890-20130614|38548_1 102 VTNCGYRPLHIAAA-HCADCVKILLEAEANALASTRVLqQTPLHL 145
                  6789**********.***************************997 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 5.9e-08
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLl 36 
                  L+++g   + a+d +g tpLh+Aa +g+++vvr++l
  MMETSP0890-20130614|38548_1 155 LIKRGKQIIQARDINGLTPLHTAALHGRTQVVREIL 190
                  566777777899**********************99 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00026      0.72       2      25 ..      73      96 ..      72      97 .. 0.94
   2 !    7.6   0.2    0.0018       4.8       2      27 ..     106     130 ..     105     133 .. 0.83
   3 ?    4.6   0.0     0.016        43       3      25 ..     140     159 ..     138     164 .. 0.82
   4 !   19.5   0.0   2.4e-07   0.00066       1      26 [.     169     195 ..     169     199 .. 0.78
   5 ?   -0.7   0.0      0.81   2.2e+03      12      22 ..     215     225 ..     205     230 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00026
    PF13606.1  2 GnTpLhlAasngrielveaLleng 25
                 G+T Lh+A   g+  l++ Lle g
  MMETSP0890-20130614|38548_1 73 GWTSLHVASAAGNAGLLRVLLEQG 96
                 9********************976 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0018
    PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                  G+ pLh+Aa ++  + v++Lle+ a+
  MMETSP0890-20130614|38548_1 106 GYRPLHIAAAHC-ADCVKILLEAEAN 130
                  899*****9996.6999999998776 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.016
    PF13606.1   3 nTpLhlAasngrielveaLleng 25 
                  +TpLhl     ++e+++aL+++g
  MMETSP0890-20130614|38548_1 140 QTPLHLC---TSTEAAHALIKRG 159
                  89***99...6778999999987 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 2.4e-07
    PF13606.1   1 nGnTpLhlAasngrielv.eaLlenga 26 
                  nG TpLh+Aa +gr+++v e+Ll++  
  MMETSP0890-20130614|38548_1 169 NGLTPLHTAALHGRTQVVrEILLFADL 195
                  89****************455545544 PP

  == domain 5    score: -0.7 bits;  conditional E-value: 0.81
    PF13606.1  12 ngrielveaLl 22 
                  +++++++++L 
  MMETSP0890-20130614|38548_1 215 RQHTDVINLLK 225
                  57999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       485  (0.035474); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.84
# Mc/sec: 984.22
//
Query:       MMETSP0890-20130614|38561_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.41s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 819.81
//
Query:       MMETSP0890-20130614|38563_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-05   22.7   0.0    0.00011   20.6   0.0    1.9  1  PF02458.10 Transferase family


Domain annotation for each model (and alignments):
>> PF02458.10  Transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     8e-09   0.00011     133     213 ..      35     122 ..      15     320 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8e-09
   PF02458.10 133 pllavqvtkfkcGGvaigvsvnHavaDgaslvtfinswAelargk..kkesvtpvfarelllpr.nppqv...kfahlelek.lpaee 213
                  pll   +  f+    +++vs +Ha++Dg +l  fi +wA  +r +       +++ ++++l  +  +  v     ++ ++++ l+ e+
  MMETSP0890-20130614|38563_1  35 PLLTACLALFEQDIAVLSVSASHAIFDGSGLIRFIDTWAYECRREcnFRNEGNIIKKSASLTTSeRKETVklpRLNQRRIRQeLTHET 122
                  56666666666665689***************************95544555677777777777444444223333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       318  (0.0232592); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.77
# Mc/sec: 1204.40
//
Query:       MMETSP0890-20130614|38583_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   11.7   0.2       0.25   10.8   0.0    1.5  2  PF06299.7 Protein of unknown function (DUF1045)
       0.52   10.8   3.5       0.99    9.9   1.8    2.1  2  PF13513.1 HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF06299.7  Protein of unknown function (DUF1045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.17   1.2e+03      42      66 ..      17      41 ..       7      50 .. 0.62
   2 ?   10.8   0.0   3.7e-05      0.25      34      74 ..      55      95 ..      33     112 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.17
    PF06299.7 42 ggflALvpaspsealqalAaacvre 66
                 +   A vp  + ++  +l +++v +
  MMETSP0890-20130614|38583_1 17 EALAACVPGMARREALTLSEDVVPA 41
                 4455556666666666666666555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.7e-05
    PF06299.7 34 palevarlggflALvpaspsealqalAaacvreldpfrapl 74
                  + +++ l +f AL + +++++l++lA + + +ld+  +++
  MMETSP0890-20130614|38583_1 55 LEATISCLATFAALGQVKAVDTLHSLARTYLGALDAITSRP 95
                 4568999****************************986554 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.8   0.00015      0.99       6      34 ..      14      43 ..      13      71 .. 0.92
   2 ?   -0.3   0.0      0.23   1.6e+03      11      11 ..      68      68 ..      44      97 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
    PF13513.1  6 aAawaLGr.laggeprllepavpellpaLl 34
                 aAa aL++ ++g ++r + ++ ++++paL 
  MMETSP0890-20130614|38583_1 14 AAAEALAAcVPGMARREALTLSEDVVPALG 43
                 7999**999********************9 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
    PF13513.1 11 L 11
                 L
  MMETSP0890-20130614|38583_1 68 L 68
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.52
# Mc/sec: 539.18
//
Query:       MMETSP0890-20130614|38587_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-11   42.8  17.4    3.5e-11   42.3  12.0    1.3  1  PF07690.11 Major Facilitator Superfamily
     0.0024   16.5   6.9     0.0038   15.9   4.8    1.3  1  PF03209.10 PUCC protein
  ------ inclusion threshold ------
      0.012   13.6   0.0      0.026   12.5   0.0    1.3  1  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3  12.0   7.7e-15   3.5e-11      22     170 ..      81     229 ..      41     237 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 7.7e-15
   PF07690.11  22 alaedlgispseigwlltlyslgy.aiasllaGrlsdrfGrrrvlllglllfalglllll.fasslwalllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggllasslgWravFlilailsllaavlvl 170
                    ++++ + p ++g llt+ + ++ ++++l++ r++  fG  +  + gl l++ g l+++ +a + +  ++++ +l  lg  +++p++ +l+ + +p+++rg+a+g+ sa++ ++  l+p+  g++++ +g r +F i+++l + aa +++
  MMETSP0890-20130614|38587_1  81 VANQSFDWGPRAFGALLTGGACASlLVSTLVFPRIVKTFGLVPSAVSGLSLLGTG-LIGIgLA-HNPHDFILAAALYQLGKPLYAPTIPTLLLRCVPPRRRGLAMGIDSAANTAARTLAPIMLGIVLHDAGVRTCFAIAGGLVFTAAFIAA 229
                  2378899********99997776659999999***********999999999999.5555574.445459****************************************************************************77543 PP

>> PF03209.10  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.8   8.2e-07    0.0038     252     391 ..      96     233 ..      89     240 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.2e-07
   PF03209.10 252 alalGtLvGlllaglvlsrgldklrlaglgvlvgllafll.....lilaallenkallvlgvlliGlgaGlfavaaltamldlaaeeqaglalGaWGaaQaiaaglaill.ggvlrdlvkalaandaalayslvfaleallliisi 391
                  +l      G ++a+l++s  + +  +++ g++  +++ l      li ++l++n+  ++l+++l  lg+ l a +  t+ l+ +++ + gla+G+  aa   a+ la ++ g vl d++  +     a+a +lvf++  +  i ++
  MMETSP0890-20130614|38587_1  96 LLT-----GGACASLLVSTLVFPRIVKTFGLVPSAVSGLSllgtgLIGIGLAHNPHDFILAAALYQLGKPLYAPTIPTLLLRCVPPRRRGLAMGIDSAANTAARTLAPIMlGIVLHDAGVRTC---FAIAGGLVFTAAFIAAIRAV 233
                  333.....4445555555555555555556555555544401111566666778999**************************************************6651666677766665...47899999988877776655 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-06     0.026     454     512 ..     148     205 ..     134     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.6e-06
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03137.15 454 fllllailsfitalsavpsllvvlRvvkeeekslalGvqsllirllgfiPapilfGali 512
                  f+l  a+ ++ + l a ++ +++lR+v++  + la+G+ s + +  +  +api+ G+++
  MMETSP0890-20130614|38587_1 148 FILAAALYQLGKPLYAPTIPTLLLRCVPPRRRGLAMGIDSAA-NTAARTLAPIMLGIVL 205
                  666777777777788888999*****************9865.6678889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       494  (0.0361322); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 924.31
//
Query:       MMETSP0890-20130614|38608_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       370  (0.0270626); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 277.08
//
Query:       MMETSP0890-20130614|38598_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-85  285.6   0.0    6.3e-85  285.3   0.0    1.1  1  PF09826.4 Beta propeller domain


Domain annotation for each model (and alignments):
>> PF09826.4  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.3   0.0   4.6e-89   6.3e-85       2     517 ..     189     811 ..     188     815 .. 0.85

  Alignments for each domain:
  == domain 1    score: 285.3 bits;  conditional E-value: 4.6e-89
    PF09826.4   2 yStTNvqveGVdEaDivktdGkyiyvvsg................ekvyivdalpa..eelklvseiklege...pkeLyLegdrLvvisseaeeeeaekkaeaekeakppkaesaatkalvydisdpkkpkllreveleGsyvsaRligdtvylvvneeleve................rieekeleellPevrdk......gekakvel..aad.siy.lpnepeaanyltvasldl.....ksgesesstsllgsg.sevYmsennLYvasss...seeeealakaleeeaeeeeekekTeihkfslkdgkveyvgsgeVpGrllnqFsldEykg..yLrvatTvgelvveeeeesennvyvLd.edLkivGkleglapgErIysaRFmgd.raYlVTfrqvDPLFviDL.sdpekPkvlGeLkiPGfseYLHpl.denhllGiGkdteek.eesavveglkvsLFDvsDlanpkevakvvigekgsdSealydhkAflfdkeknllalPvs..................eaeeeasgqglyvfevd.aeeglklvgkiehaede...............................eaaskeveRslyidDtlYtvseaeikvadl 517
                  +S TN+q e VdEaD vk  G+++y++s+                 +++iv+  ++  ++l+l++++ l+     pke+++ g+ L++i+s + e ++++   +e+ ++ ++++++a+ +l +d+sdp  p+l+r    eG+y+s Rli+dt ylv++ +  +                 ++ + ++++llPe          + + +  +  +++ + y  p ++e  ++++v++++l     +++ +++s +++ ++   +Y+s+ ++Y+++++   +++++   + ++ee+e+   +  T + kf+++ ++v+y  s +VpG+l++qF++ E ++   +r atT + +  ++ e  ++ ++v d ++  ++G+l++lapgE+I++aRF+gd  +YlVTf ++DPL++i   s+ ++P vl eLki Gfs+YLHp+ + ++++G+G d  e  ++  v+ gl++sLFDv++ ++ ++++ ++ig+ gs S a++dh+Af++d++ ++la+P +                   ++  +++qg++ f++d ++++++++g+++h  d                                +++ ++++R++  +D+l+tvs++ i  +++
  MMETSP0890-20130614|38598_1 189 FSGTNIQEELVDEADTVKSSGNILYLASRtvplshselstttkceYRLSIVRDDDSggDSLQLLASVPLGPLlttPKEMLIRGNVLLLIGSASLEFDTTS---QEERTAYYYNYQDAVVILWFDVSDPTLPRLVRRQIREGYYISGRLIQDTAYLVISRQSWYAnsgpwlvpyyrdeifdQYLDLNQSALLPEEISIdlwqqfAARIPLTNacDCTdIAYaWPMNSELGEFSSVLAISLasvdeATTVPVASDTVATRAdRILYASTRAIYLTQQQylgWNWWRGVDEISSEEDEWDAPQVRTFVLKFEVDAQSVHYSTSFDVPGELVEQFAVSETSDgtKIRFATTARAI--NNWESVSSGLFVYDaHNGSELGSLTHLAPGESIFAARFLGDgICYLVTFVRTDPLYAIAFeSEGTTPIVLDELKIRGFSNYLHPIlSIDRVIGLGHDVLELeTGGIVTAGLQLSLFDVAN-NDLARLDLYTIGDTGSFSIATSDHRAFFYDTDSHVLAFPLTlatldarteffpeeviqpWTQGLVNFQGAFFFKIDdSQNSFSYLGNVTHFVDPdfftprwvpydwviegeeeetagywdtyfntYDSGYHISRIFRRGDNLFTVSDSAILKSSF 811
                  799*************************88**************99*****9988666999*****999877778***************7777665555...44445689999********************************************9998889***************66666666666665444455446443333330033313331466677777788888888433212333345555566442678***********982223455555555666668889999**********************************9953379999999865..666677899*****9999***********************458***************9457799******************74779*********99835566777*********98.78999***************************************************998778889**********98899**********98779****************************9999999*****************99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.39s 00:00:01.52 Elapsed: 00:00:01.05
# Mc/sec: 1926.21
//
Query:       MMETSP0890-20130614|38610_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   24.5   0.1      4e-05   23.9   0.1    1.3  1  PF13640.1 2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.036   13.5   0.0    1.3  1  PF13661.1 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   5.8e-09     4e-05       6      94 ..     112     184 ..     107     188 .] 0.82

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 5.8e-09
    PF13640.1   6 ygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgrrla 94 
                   + + ++++H+D+   + +++++   l+ p+ +++GG+l++      e++ ++++      ++g++ + ++  + H+v+pv+ + r+ +
  MMETSP0890-20130614|38610_1 112 SETRPYFPWHIDG---NAFTANVA--LSSPN-DYSGGHLRVL----VEDSIRTLK-----RNQGDVTVHTN-AVCHAVSPVDFGVRHTM 184
                  577889*******...77777777..99999.79********....899999999.....9**********.*********44444443 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.3e-06     0.036      13      62 ..     107     146 ..      99     151 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.3e-06
    PF13661.1  13 faltratrgdffdpHiDadpsqlgkprflsallYLNedwdadfdGgtlff 62 
                  +++++  +  +f +HiD +         ++a + L+   + d+ Gg l+ 
  MMETSP0890-20130614|38610_1 107 IRRYCSETRPYFPWHIDGNA--------FTANVALS--SPNDYSGGHLRV 146
                  67888888889*********........999*****..********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 790.38
//
Query:       MMETSP0890-20130614|38612_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 605.40
//
Query:       MMETSP0890-20130614|38616_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0008   19.2   5.2     0.0018   18.2   3.6    1.6  1  PF00684.14 DnaJ central domain
     0.0028   18.1   0.0     0.0084   16.5   0.0    1.8  1  PF12847.2  Methyltransferase domain
      0.005   16.7   0.1      0.014   15.3   0.0    1.7  1  PF13659.1  Methyltransferase domain
  ------ inclusion threshold ------
       0.03   13.5   0.0      0.044   12.9   0.0    1.2  1  PF08123.8  Histone methylation protein DOT1
      0.088   13.0   0.4       0.88    9.8   0.0    2.7  4  PF13649.1  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF00684.14  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   3.6   6.4e-07    0.0018       1      33 [.      18      51 ..      18      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.4e-07
   PF00684.14  1 CekCkGtgakkgkkvktCkkCnGsGvvvkeqr.a 33
                 C kC+G+g++++++  +C+ C GsG+   + r +
  MMETSP0890-20130614|38616_1 18 CWKCRGSGQNPRNENARCNVCGGSGTMAIRPRsT 51
                 99***********************988777634 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.1e-06    0.0084       6      63 ..     130     191 ..     124     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.1e-06
    PF12847.2   6 lDlGcGtGslslelar....lrpgakvvgvDpseeslelarenaksldleeriellqgda..ke 63 
                  +DlG+G Gs++l +a     ++++ + ++v+++e+s +lar+ +  + ++  +e + gd+  + 
  MMETSP0890-20130614|38616_1 130 IDLGSGIGSVLLFIAWqasiQNRNYQGLSVEAQEDSWQLARRSI--AYNGAPCEAILGDLrcFS 191
                  7*********999988889999********************99..677788888888875444 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.1e-06     0.014       5      89 ..     130     228 ..     128     279 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.1e-06
    PF13659.1   5 ldpgcGsGtfllaalell.....aalllgvEldpraaalaarnlaraglaervrvrqgdlrdl......aellrags...........fdlvvtnpPygpragaraa 89 
                  +d+g+G G +ll+ + ++     + ++l+vE ++ + +la+r +a +g+  +++ + gdlr +      +                    l+ + pPy + + ++ a
  MMETSP0890-20130614|38616_1 130 IDLGSGIGSVLLFIAWQAsiqnrNYQGLSVEAQEDSWQLARRSIAYNGA--PCEAILGDLRCFsqhthlE------TfltaaqdnndvLLLITGTPPYFRVETSNLA 228
                  79*********9999995566789*********************9998..5777777776663333331......2222223444446677788999744333333 PP

>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.044      45      84 ..     128     171 ..     114     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
                  EEEEE------HHHHHHHH----EE....E--B--HHHHHHHHH CS
    PF08123.8  45 vFvDLGSGvGnvvlqaalevgckls....vGvEimdnaselaek 84 
                  + +DLGSG+G v l++a ++ +++     + vE  ++  +la++
  MMETSP0890-20130614|38616_1 128 LHIDLGSGIGSVLLFIAWQASIQNRnyqgLSVEAQEDSWQLARR 171
                  579***********999888776431111446666666666665 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.8   7.6e+03       2      12 ..      35      45 ..      35      52 .. 0.77
   2 ?   -1.3   0.0      0.93   2.5e+03       3      13 ..      83      93 ..      82     110 .. 0.74
   3 ?    9.8   0.0   0.00032      0.88       2      64 ..     130     193 ..     129     221 .. 0.79
   4 ?   -1.7   0.0       1.2   3.3e+03      29      44 ..     281     296 ..     261     308 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.8
    PF13649.1  2 ldlGCGsGrvi 12
                 ++++ GsG+ +
  MMETSP0890-20130614|38616_1 35 CNVCGGSGTMA 45
                 58999999654 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.93
    PF13649.1  3 dlGCGsGrvir 13
                 dl+C sGr+  
  MMETSP0890-20130614|38616_1 83 DLCCLSGRWRI 93
                 9*****98744 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00032
    PF13649.1   2 ldlGCGsGrvira.ltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfe 64 
                  +dlG+G G v+ + +++a  ++++ + + v+ +e+ ++la++ ++ +g++ +++ +d+r ++++
  MMETSP0890-20130614|38616_1 130 IDLGSGIGSVLLFiAWQASIQNRNYQGLSVEAQEDSWQLARRSIAYNGAPCEAILGDLRCFSQH 193
                  59******9876615555444555666669**************99***********9877654 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 1.2
    PF13649.1  29 gvDiseealelakerl 44 
                  g+D++ ++++ a++++
  MMETSP0890-20130614|38616_1 281 GLDYNRHRVDSAAHQA 296
                  5888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.36s 00:00:01.02 Elapsed: 00:00:00.79
# Mc/sec: 1101.11
//
Query:       MMETSP0890-20130614|38630_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.033   13.8   0.0      0.078   12.6   0.0    1.6  1  PF07498.7  Rho termination factor, N-terminal domain
      0.057   12.8   0.5       0.17   11.2   0.2    2.1  2  PF02037.22 SAP domain
       0.11   11.4   0.0        0.2   10.6   0.0    1.4  1  PF03102.9  NeuB family


Domain annotation for each model (and alignments):
>> PF07498.7  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.078       2      20 ..      64      82 ..      63      89 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
    PF07498.7  2 LkektleeLreiAkelgie 20
                 L+++ l+eLr++++e+gie
  MMETSP0890-20130614|38630_1 64 LESLDLKELRQLCRERGIE 82
                 999***************9 PP

>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   3.8e-05      0.17       6      20 ..      69      83 ..      64      84 .. 0.83
   2 ?   -3.3   0.0       1.3   6.1e+03       9      18 ..     244     253 ..     244     253 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHTT--- CS
   PF02037.22  6 VaeLKaeLkkrGLpt 20
                  +eL++++++rG+++
  MMETSP0890-20130614|38630_1 69 LKELRQLCRERGIEI 83
                 68**********975 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
                  HHHHHHHTT- CS
   PF02037.22   9 LKaeLkkrGL 18 
                  L+++L  rG+
  MMETSP0890-20130614|38630_1 244 LRDFLIDRGI 253
                  7888888886 PP

>> PF03102.9  NeuB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.5e-05       0.2      29      86 ..      38      97 ..      26     103 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.5e-05
                 GG--........---S-HHHHHHHH---HHHHHHHHHHHHH---EEEEEE-SHHHHHHHH CS
    PF03102.9 29 kkaeyq..kknkeeeesqlellkklelseeehkelkeyckekgieflstpfdlesvdfle 86
                 +k++ +  kk+++    +l  l k++l+  + kel + c+e+gie+   ++ ++ vd l 
  MMETSP0890-20130614|38630_1 38 EKKDEKrpKKHEKIPADLLHGLGKASLESLDLKELRQLCRERGIEIAEFAYRNTCVDKLL 97
                 22222200233334448889999***********************99999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.39s 00:00:01.00 Elapsed: 00:00:00.64
# Mc/sec: 1127.04
//
Query:       MMETSP0890-20130614|38639_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-06   26.7   0.1    1.1e-05   25.3   0.0    1.8  1  PF13857.1  Ankyrin repeats (many copies)
    0.00021   20.8   0.1      0.013   15.1   0.0    2.6  2  PF00023.25 Ankyrin repeat
     0.0028   17.8   0.0     0.0052   16.9   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
     0.0083   16.1   0.0        2.1    8.7   0.0    2.7  2  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
      0.023   15.1   0.1       0.92   10.0   0.0    2.4  2  PF13637.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     4e-09   1.1e-05       6      56 .]     129     181 ..     125     187 .] 0.92

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 4e-09
    PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLl..apgadlnlrdsdgltaldlA 56 
                  ++++ + d +g++ Lh+Aa++g++ ++r+L   a+ga   + d d +t+l +A
  MMETSP0890-20130614|38639_1 129 SEALASVDARGRSILHVAASRGDSILCRELAqvAKGALVSALDDDLETPLSVA 181
                  567778899999**************************************887 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.8e-06     0.013       2      33 .]     139     172 ..     138     172 .. 0.95
   2 ?    3.2   0.0     0.029        79       3      14 ..     175     186 ..     173     187 .] 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.8e-06
                  SCBHHHHHHHTTHHHHHHHHHH..TTSSTTHBHT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLls..qGAdlnaqdd 33 
                  G++ LH+Aa+rg+   ++ L +  +GA + a dd
  MMETSP0890-20130614|38639_1 139 GRSILHVAASRGDSILCRELAQvaKGALVSALDD 172
                  9999*************************99997 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.029
                  CBHHHHHHHTTH CS
   PF00023.25   3 fTPLHlAalrgn 14 
                  +TPL +Aa+ g+
  MMETSP0890-20130614|38639_1 175 ETPLSVAAHQGR 186
                  7*******9985 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06    0.0052      21      71 ..     133     186 ..     100     187 .] 0.86

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-06
    PF12796.2  21 advdl.getpLhlAaeagnleivklLle..agadvnakdkegntpLhlAvrngh 71 
                  a+vd  g++ Lh+Aa++g+   ++ L +  +ga v a d++ +tpL +A+ +g+
  MMETSP0890-20130614|38639_1 133 ASVDArGRSILHVAASRGDSILCRELAQvaKGALVSALDDDLETPLSVAAHQGR 186
                  677778888999999999999999998888999999999999999999999987 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00076       2.1       2      21 ..     139     158 ..     138     169 .. 0.76
   2 ?    4.7   0.0     0.015        41       2      14 ..     174     186 ..     173     187 .] 0.88

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00076
    PF13606.1   2 GnTpLhlAasngrielveaL 21 
                  G+++Lh+Aas+g   l+++L
  MMETSP0890-20130614|38639_1 139 GRSILHVAASRGDSILCREL 158
                  99*********976555555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.015
    PF13606.1   2 GnTpLhlAasngr 14 
                   +TpL +Aa++gr
  MMETSP0890-20130614|38639_1 174 LETPLSVAAHQGR 186
                  58********998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00036      0.98      29      47 ..     134     152 ..     125     159 .. 0.83
   2 ?   10.0   0.0   0.00034      0.92       1      45 [.     139     185 ..     139     186 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00036
    PF13637.1  29 rtdesGntaLhiAalrgni 47 
                   +d++G++ Lh+Aa+rg+ 
  MMETSP0890-20130614|38639_1 134 SVDARGRSILHVAASRGDS 152
                  45999************85 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00034
    PF13637.1   1 gltaLhyaaisgrlelvklLl..ekgidinrtdesGntaLhiAalrg 45 
                  g++ Lh+aa+ g+  l++ L   +kg+ + ++d++ +t+L +Aa  g
  MMETSP0890-20130614|38639_1 139 GRSILHVAASRGDSILCRELAqvAKGALVSALDDDLETPLSVAAHQG 185
                  6899*****************7779***************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.72
# Mc/sec: 622.39
//
Query:       MMETSP0890-20130614|38632_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-88  296.3   0.0    1.6e-88  296.1   0.0    1.0  1  PF00928.16 Adaptor complexes medium subunit family
  ------ inclusion threshold ------
      0.067   13.0   0.1        0.5   10.2   0.1    2.2  2  PF08460.5  Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> PF00928.16  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.1   0.0   2.3e-92   1.6e-88       1     262 [.      39     306 ..      39     307 .. 0.98

  Alignments for each domain:
  == domain 1    score: 296.1 bits;  conditional E-value: 2.3e-92
                  -------------EEEEEEEEEEEEEE-----EEEEEEE-EEEEEE------EEEE---SS-B-........-----B-SEEEEETT-B-TTHHHH--EEE------EEEEEEEB-S-S--SEEEEEEEE.-----EEEEEEEEE-S-TT--BEEEEEEE------EEEEE--STTEEEE---..-EEEEE--B--.......-EE---EEEE----------EEEEEEEET-----------EEE--------EEEEEEEEEEEEEEE- CS
   PF00928.16   1 vpwrpsgikykknevyldviEkvsvlvdkdgkllnsevqGtialkskLsGmpevklsLndelni........ekkgielddvsfHpcVrlskfeservisFiPpdgefeLmrYrvseesklplklecqvkeeskgrievnvklesqlkrklslenvkitiplPkevskpvlkvsdGkakydseenvleWsikklpgekehalsgelelsaeqekeekdrekppvsveFsipgataSglkVrslkvsekkenvkpykwVryvtksgkysvr 262
                  v+wr++gik++kne++ldviEk+++lv++ g +lnse+ G i++ks+LsGmpe+kl+Lnd+l +        + k++el+d++fH+cVrl++fe++r+isFiPpdgef+Lm Yr+++++k+ +++e  v+ +s +rie+++k++sq+k+++ ++ v i +p+P++v++p++k s+G+++y +++n+++Wsik+++g++e+ +++++ l++ ++++   + k p++v+F+ip++t+Sg++Vr+lk++e k++++  +wVry+t+ g+y+ r
  MMETSP0890-20130614|38632_1  39 VSWRSEGIKHRKNEIFLDVIEKLNLLVSSTGAVLNSEIVGAIRMKSFLSGMPELKLGLNDKLMFeatgrpmtRGKAVELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLATHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSVANSVDIIVPVPHDVDSPSFKSSIGTVTYLPDRNAIVWSIKQFNGAREYLMRAHFGLPSVSSDDVDHW-KAPIEVHFEIPYFTVSGIQVRYLKIIE-KSGYQALPWVRYITQNGDYQLR 306
                  68***********************************************************988********9******************************************************7777**********************************************************************************999888.9***********************999.7******************998 PP

>> PF08460.5  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.15     1e+03      53      64 ..     229     240 ..     225     240 .. 0.83
   2 ?   10.2   0.1   7.2e-05       0.5      34      60 ..     274     303 ..     267     307 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.15
                  EE-----EEEEE CS
    PF08460.5  53 ytsysGarrYvp 64 
                   ++++Gar Y++
  MMETSP0890-20130614|38632_1 229 IKQFNGAREYLM 240
                  5789******85 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 7.2e-05
                  --EEEEEEEEE----E...EE-EE-----E CS
    PF08460.5  34 GdkvkYDevltadGyv...WlsytsysGar 60 
                  G +v+Y +++++ Gy+   W++y +++G +
  MMETSP0890-20130614|38632_1 274 GIQVRYLKIIEKSGYQalpWVRYITQNGDY 303
                  889************9999*********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       210  (0.0153599); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 911.21
//
Query:       MMETSP0890-20130614|38637_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-67  224.7   1.0    1.2e-66  224.2   0.7    1.2  1  PF00198.18 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
    1.2e-39  133.6   8.3      2e-20   72.0   0.8    2.5  2  PF00364.17 Biotin-requiring enzyme
    1.7e-27   94.6   5.4    1.6e-13   49.9   0.1    2.7  2  PF02817.12 e3 binding domain
    9.3e-10   37.9   1.3    9.4e-05   21.8   0.1    3.4  3  PF13533.1  Biotin-lipoyl like
    0.00017   20.8   0.2       0.61    9.4   0.0    2.6  2  PF07831.8  Pyrimidine nucleoside phosphorylase C-terminal domain
    0.00017   21.1   3.0       0.32   10.5   0.0    2.9  3  PF01597.14 Glycine cleavage H-protein
     0.0035   17.5   1.5        5.7    7.2   0.0    3.5  3  PF13437.1  HlyD family secretion protein
     0.0043   16.1   0.8          2    7.3   0.0    2.5  2  PF12700.2  HlyD family secretion protein
  ------ inclusion threshold ------
      0.023   14.2   0.1        3.2    7.3   0.0    2.6  2  PF09891.4  Uncharacterized protein conserved in archaea (DUF2118)
       0.11   12.3   0.0        7.8    6.3   0.0    2.7  3  PF14208.1  Domain of unknown function (DUF4320)


Domain annotation for each model (and alignments):
>> PF00198.18  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2   0.7   8.4e-70   1.2e-66       6     228 ..     344     563 ..     341     566 .] 0.95

  Alignments for each domain:
  == domain 1    score: 224.2 bits;  conditional E-value: 8.4e-70
                  XXXXXXXXXXXXXX-----.---EEEEEEEEE-HHHHHHHHHHHHHHHH------HHHH---CCCHHHHH-GGGG-EE.EE-.EEE--SS--E-EE--------EEEE--GGG-----HHHHHHHHHHHH------GGGT----SEE---------------------EE-----.B--TT----...-----EEEEEEEEETTT--------HHHHHHHTT-HHHH CS
   PF00198.18   6 rvplsgirkaiakrlteskqtiPhftlsdevdvtallalrkklkedeakeekkltlldflikavalalkefPelnssvdeek.eivlkksvnigiAvatpdGLlvPviknadkkslleiakelkdlaeraregklkpeeleggtftisNlGmlGvtsftPiinppqvaIlavgrikerpvvkege...ivirkvmtlslsaDHRvidGaeaarFlntlkellenper 228
                   vp++g++kaiak++++++  +P f +s+++  +a   l++klk +       +t+ ++l+kavalal++ P +n+++d ++  iv+++++n+++Ava++ GL++P +kna+++++l++++++k+l+ +a++++l+p+e++ gtftisNlGm++v +f++i++ +q  Ila+g+ k++ v  +++   + i k mt+++++DHR+i Ga+aa+Fln+lk ++enp+ 
  MMETSP0890-20130614|38637_1 344 AVPMTGMQKAIAKNMEATL-AVPVFRVSKTIVTDAFDGLYQKLKPEG------VTVSALLAKAVALALEKTPLINAKYDPTQqAIVYNENINVAMAVALDGGLITPTLKNANTLTILDLSAAWKELVSKAKNKELTPDEYTTGTFTISNLGMFDVAQFDAILPVGQGSILAIGSSKKTIVPLDNAvmgMGIVKQMTVTITCDHRIISGADAAKFLNDLKLVIENPTP 563
                  59*****************.*************************85......9*************************99999******************************************************************************************96555557777788899999*******************************85 PP

>> PF00364.17  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.7   1.7e-21   2.4e-18       5      73 ..       1      69 [.       1      70 [. 0.97
   2 !   72.0   0.8   1.5e-23     2e-20       2      72 ..     113     183 ..     112     185 .. 0.96

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1.7e-21
                 -S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECEE CS
   PF00364.17  5 sPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 73
                 +P++++++++g+vv++l++vGdkV+ag+++++ve++K+ me+e+ ++G ++++l+ eG+  +vg ++ +
  MMETSP0890-20130614|38637_1  1 MPALSSTMTSGRVVSWLKSVGDKVEAGDPIIVVESDKADMEVESYEEGFLAQVLIGEGEDADVGATIGI 69
                 8***************************************************************99865 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 1.5e-23
                  EES-S----EEEE--ECCESS-------CTSEEEEEESSSSEEEEEBS----EEEESS-TT-EE----ECE CS
   PF00364.17   2 eiksPmiGesvkegtvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdlla 72 
                   +++P++++++k+g++v++l++vGdkV ag+++++ve++K+ me+e+ ++G +++ilv+eG++ evg ++ 
  MMETSP0890-20130614|38637_1 113 PVTMPALSSTMKSGRIVSWLKSVGDKVDAGDPVMVVESDKADMEVESYEDGFLASILVEEGAEAEVGAPVG 183
                  699****************************************************************9975 PP

>> PF02817.12  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.7   1.6e-15   2.2e-12       2      38 ..     230     266 ..     229     267 .. 0.94
   2 !   49.9   0.1   1.2e-16   1.6e-13       4      39 .]     283     318 ..     280     318 .. 0.95

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.6e-15
                  SSSBSHHHHHHHHHTT--GGG---------B-HHHHH CS
   PF02817.12   2 rvfasPaaRkLAaekgidLsqvkGTGpgGRItkeDVe 38 
                  rv as  aR+LA +kgidLs ++G+GpgGR++  DVe
  MMETSP0890-20130614|38637_1 230 RVAASGYARRLATDKGIDLSTISGSGPGGRVVARDVE 266
                  7888999*****************************9 PP

  == domain 2    score: 49.9 bits;  conditional E-value: 1.2e-16
                  SBSHHHHHHHHHTT--GGG---------B-HHHHHH CS
   PF02817.12   4 fasPaaRkLAaekgidLsqvkGTGpgGRItkeDVea 39 
                   a+P+aRkLA+ kg+dL++++GTG  GR+t  DVea
  MMETSP0890-20130614|38637_1 283 TATPSARKLAKSKGLDLDKIQGTGNFGRVTLTDVEA 318
                  69********************************97 PP

>> PF13533.1  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   6.9e-08   9.4e-05      10      39 ..      10      39 ..       4      70 .. 0.89
   2 !   12.4   0.1   6.2e-05     0.085      10      37 ..     125     152 ..     118     161 .. 0.88
   3 ?   -0.4   0.0      0.61   8.4e+02      10      27 ..     162     179 ..     155     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.9e-08
    PF13533.1 10 sGrVeevlVkeGqeVkkGDvLleldsekle 39
                 sGrV+++l + G+ V++GD++++++s+k  
  MMETSP0890-20130614|38637_1 10 SGRVVSWLKSVGDKVEAGDPIIVVESDKAD 39
                 9************************99865 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.2e-05
    PF13533.1  10 sGrVeevlVkeGqeVkkGDvLleldsek 37 
                  sGr++++l + G+ V +GD+ ++++s+k
  MMETSP0890-20130614|38637_1 125 SGRIVSWLKSVGDKVDAGDPVMVVESDK 152
                  9******************999988877 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.61
    PF13533.1  10 sGrVeevlVkeGqeVkkG 27 
                  +G ++++lV eG e + G
  MMETSP0890-20130614|38637_1 162 DGFLASILVEEGAEAEVG 179
                  78899*******987776 PP

>> PF07831.8  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00044      0.61      36      57 ..      16      37 ..      14      47 .. 0.81
   2 !    8.6   0.0   0.00081       1.1      36      57 ..     131     152 ..     129     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00044
                 S-------------SEEEEESS CS
    PF07831.8 36 lhkkvGdkVkkGeplatiyank 57
                   k vGdkV++G+p++++ ++k
  MMETSP0890-20130614|38637_1 16 WLKSVGDKVEAGDPIIVVESDK 37
                 5799***********9986555 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00081
                  S-------------SEEEEESS CS
    PF07831.8  36 lhkkvGdkVkkGeplatiyank 57 
                    k vGdkV++G+p++++ ++k
  MMETSP0890-20130614|38637_1 131 WLKSVGDKVDAGDPVMVVESDK 152
                  5799************986655 PP

>> PF01597.14  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00034      0.47      33      70 ..      13      49 ..       5      54 .. 0.82
   2 ?   -3.3   0.0       4.5   6.2e+03      48      73 ..      74      99 ..      59     110 .. 0.51
   3 !   10.5   0.0   0.00023      0.32      31      69 ..     126     163 ..     112     173 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00034
                 EEEE----------TT-B---EEESS-EE--B-S---- CS
   PF01597.14 33 lvfvelpevgtevekgeslaavEsvKaasevyapvsGe 70
                 +v+  l+ vg++ve+g+++ +vEs Ka  ev +  +G 
  MMETSP0890-20130614|38637_1 13 VVS-WLKSVGDKVEAGDPIIVVESDKADMEVESYEEGF 49
                 444.59*********************99998877775 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4.5
                 T-B---EEESS-EE--B-S----EEE CS
   PF01597.14 48 geslaavEsvKaasevyapvsGevve 73
                  e++a++ ++  +s   ++ s + +e
  MMETSP0890-20130614|38637_1 74 AEDIASIQAGNDTSSAQSQASSTPTE 99
                 34445555555555544444444444 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00023
                  --EEEE----------TT-B---EEESS-EE--B-S--- CS
   PF01597.14  31 gdlvfvelpevgtevekgeslaavEsvKaasevyapvsG 69 
                  g++v+  l+ vg++v++g+++ +vEs Ka  ev +  +G
  MMETSP0890-20130614|38637_1 126 GRIVS-WLKSVGDKVDAGDPVMVVESDKADMEVESYEDG 163
                  66655.49*********************9999877666 PP

>> PF13437.1  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1     0.006       8.2       7      41 ..      10      45 ..       7     102 .. 0.89
   2 !    7.2   0.0    0.0042       5.7       6      40 ..     124     159 ..     122     162 .. 0.89
   3 ?    0.5   0.0      0.51     7e+02       4      42 ..     159     197 ..     156     221 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.006
    PF13437.1  7 dGvVhevnvqegqvvaagdplaeiipt.delkveay 41
                 +G+V+++  ++g+ v+agdp++ +  + ++++ve y
  MMETSP0890-20130614|38637_1 10 SGRVVSWLKSVGDKVEAGDPIIVVESDkADMEVESY 45
                 8********************999987578888865 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0042
    PF13437.1   6 vdGvVhevnvqegqvvaagdplaeiipt.delkvea 40 
                  ++G+++++  ++g+ v agdp++ +  + ++++ve 
  MMETSP0890-20130614|38637_1 124 KSGRIVSWLKSVGDKVDAGDPVMVVESDkADMEVES 159
                  69**********************998767888886 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.51
    PF13437.1   4 ApvdGvVhevnvqegqvvaagdplaeiiptdelkveayv 42 
                  +  dG ++++ v+eg   + g+p+  ++ t++ ++ +  
  MMETSP0890-20130614|38637_1 159 SYEDGFLASILVEEGAEAEVGAPVGMLAETEDQIAAVAA 197
                  667999999999999999999999999998544444444 PP

>> PF12700.2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1     0.002       2.8      25      64 ..       6      46 ..       3     106 .. 0.79
   2 !    7.3   0.0    0.0015         2      25      59 ..     121     156 ..      97     165 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.002
    PF12700.2 25 saeesGyi.kylvkeGekVkkgqvlatldsseldeqlkeal 64
                 s+ +sG++ ++l + G+kV +g+ + +++s++ d + + ++
  MMETSP0890-20130614|38637_1  6 STMTSGRVvSWLKSVGDKVEAGDPIIVVESDKADMEVESYE 46
                 56689*************************99887766555 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0015
    PF12700.2  25 saeesGyi.kylvkeGekVkkgqvlatldsseldeq 59 
                  s+ +sG+i ++l + G+kV +g+ +++++s++ d +
  MMETSP0890-20130614|38637_1 121 STMKSGRIvSWLKSVGDKVDAGDPVMVVESDKADME 156
                  67789*************************998755 PP

>> PF09891.4  Uncharacterized protein conserved in archaea (DUF2118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0023       3.2      87     128 ..       9      49 ..       3      82 .. 0.87
   2 ?    4.2   0.0      0.02        28      89     129 ..     126     165 ..     119     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0023
    PF09891.4  87 vegykvtlivdvGdrvrkgdalaavttrkgevrylrspveGv 128
                   +g +v+    vGd+v+ gd++ +v++ k ++  ++s  eG 
  MMETSP0890-20130614|38637_1   9 TSGRVVSWLKSVGDKVEAGDPIIVVESDKADME-VESYEEGF 49 
                  578899999********************9974.66666665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.02
    PF09891.4  89 gykvtlivdvGdrvrkgdalaavttrkgevrylrspveGvV 129
                  g  v+    vGd+v  gd++ +v++ k ++  ++s  +G  
  MMETSP0890-20130614|38637_1 126 GRIVSWLKSVGDKVDAGDPVMVVESDKADME-VESYEDGFL 165
                  556788889******************9984.677777765 PP

>> PF14208.1  Domain of unknown function (DUF4320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0057       7.8      20      90 ..      88     155 ..      80     171 .. 0.89
   2 ?    2.7   0.0     0.074     1e+02      55      92 ..     402     439 ..     382     452 .. 0.79
   3 ?   -3.5   0.0       6.4   8.7e+03      78      90 ..     529     541 ..     527     542 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0057
    PF14208.1  20 vakqkldefAselvreaeleGgvqsetselieklreklklaeeiswsveytkgkiqlnqelevtitgeyel 90 
                  +a+ ++  + +e+++ ae + g++  t+  ++ l++++k    +sw      +k++ + ++ v    ++++
  MMETSP0890-20130614|38637_1  88 SAQSQASSTPTETIESAETSPGLG--TPVTMPALSSTMKSGRIVSWL-KSVGDKVDAGDPVMVVESDKADM 155
                  5778999999**************..999*****************8.77899*******99976666655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.074
    PF14208.1  55 eklklaeeiswsveytkgkiqlnqelevtitgeyelgi 92 
                    l++++ i+ +++ t+++i +n++++v +    + g+
  MMETSP0890-20130614|38637_1 402 LALEKTPLINAKYDPTQQAIVYNENINVAMAVALDGGL 439
                  45677777999*****************9887766555 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 6.4
    PF14208.1  78 qelevtitgeyel 90 
                  ++++vtit+++++
  MMETSP0890-20130614|38637_1 529 KQMTVTITCDHRI 541
                  6799999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.72
# Mc/sec: 1883.80
//
Query:       MMETSP0890-20130614|38649_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       102  (0.0074605); expected 273.4 (0.02)
Passed bias filter:                       99  (0.00724108); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:00.68
# Mc/sec: 126.87
//
Query:       MMETSP0890-20130614|38651_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.63
# Mc/sec: 996.58
//
Query:       MMETSP0890-20130614|38656_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-25   87.7   0.1    4.7e-25   87.1   0.1    1.2  1  PF01722.13 BolA-like protein


Domain annotation for each model (and alignments):
>> PF01722.13  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.1   3.4e-29   4.7e-25       5      74 ..      43     118 ..      40     119 .. 0.96

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 3.4e-29
                  HH-SE.EEEEE--...............---EEEEEE-GGGTT--HHHHHHHHHHHHHHHGGG.-S-EEEEEE-HHH CS
   PF01722.13   5 alapeelevedeshkHagh.......ageshfkvvivSeaFegksrvkRhrlVyalLkeelkegiHALslktytpee 74 
                   l+p+++e  desh+Hagh       ageshfk++iv+++F+++srvkRh+l+y +L++ +++ iHAL++ +++p+e
  MMETSP0890-20130614|38656_1  43 VLQPTSIELVDESHQHAGHagakgfeAGESHFKLDIVADCFDDLSRVKRHQLIYTILGDIMQQ-IHALQIFARSPSE 118
                  689*********************9888*********************************99.***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|38670_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-22   79.1   0.0      4e-22   78.9   0.0    1.1  1  PF13460.1  NADH(P)-binding
    1.7e-10   40.4   0.0    2.4e-10   39.9   0.0    1.2  1  PF05368.8  NmrA-like family
      6e-08   32.2   0.0    1.8e-07   30.7   0.0    1.7  1  PF01370.16 NAD dependent epimerase/dehydratase family
    7.8e-06   24.6   0.1    1.2e-05   24.1   0.0    1.3  1  PF01073.14 3-beta hydroxysteroid dehydrogenase/isomerase family
    0.00081   18.2   0.0        1.5    7.6   0.0    2.7  2  PF07993.7  Male sterility protein
  ------ inclusion threshold ------
      0.083   12.6   0.0       0.11   12.2   0.0    1.4  1  PF00106.20 short chain dehydrogenase
       0.11   12.6   0.1       0.45   10.7   0.1    1.9  2  PF01118.19 Semialdehyde dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   2.1e-25     4e-22       1     157 [.       3     175 ..       3     211 .. 0.79

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 2.1e-25
    PF13460.1   1 IaviGAtGktGrrivkellarghevtalvRnpsklpe....ssgvtivkkDlfdledlaealagvdvvvdafgarped..regvkhlldalkaagvrrlvv.vsaaglyr..dkpglfel...ldkplfkeylrakaaaeell....easgldwtivrPaalfeaeettyeli 157
                  I v+GAtG tGr  vk++l++g + +++vR+p klpe    s++v+i++++ +dl  ++ a++g d+vv+++  + +   ++++  ++ +++++gv+++++  +a++++   ++++ ++l   +  plfk ++   a  e+++    + ++ldw i rP+ ++++e+++  + 
  MMETSP0890-20130614|38670_1   3 ITVLGATGGTGRHFVKRALKEGQSLRLIVRSPAKLPEevknSKNVEIFEGSFTDLDLVDRAIKGSDAVVSMARGGGKItmESLITSVVGSMRKHGVKKIFYqAGALSAQAdsWPAPSMMLaryVLLPLFKGVYGLGADNEKVIafldKCDDLDWIITRPGLIVDEESKGKLVQ 175
                  89*************************************999******************************7666624599******************95688887665344444444344667788999966666666664434446***************97644443 PP

>> PF05368.8  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.3e-13   2.4e-10       1     101 [.       3     104 ..       3     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.3e-13
                  EEESS----HHHHHHHHHHH---EEEEE-S-----HHHHHHH.STTEEE---TT-HHHHHHHH----EEEE---TT-..--TTT---HHHHHHHH---SEEEEE CS
    PF05368.8   1 ilviGaTGrqGksvvraslkaghkvralvRdlkselakslka.aGvelvegdlddkeslvealkgvdvvfsvttfve..skeiedgkklvdAakeaGvkrfvpS 101
                  i+v+GaTG  G+++v+ +lk+g + r +vR + + l +++k+ + ve+ eg++ d +++++a+kg+d+v s+        +e    + +v    + Gvk++++ 
  MMETSP0890-20130614|38670_1   3 ITVLGATGGTGRHFVKRALKEGQSLRLIVRSPAK-LPEEVKNsKNVEIFEGSFTDLDLVDRAIKGSDAVVSMARGGGkiTMESL-ITSVVGSMRKHGVKKIFYQ 104
                  89*****************************976.55666651556677***********************995543323322.3566777888999999986 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   9.1e-11   1.8e-07       1      77 [.       3      78 ..       3     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 9.1e-11
                 EEEE--------HHHHHHHHH-TEEEEESSCSTCCCCCCHHH..TBEEEB--TT-HHHHHHHHHHHT.SEEEE--S--- CS
   PF01370.16  1 ilVtGatGfiGsalveallekgyevvnlirrtrseslatvri..rvelveldltdkdalerlfaeeqpdaVihlAaesg 77
                 i V+GatG  G+++v++ l++g++ + li r+ ++ +++v++  +ve++e+  td d ++r+++++  daV+ +A   g
  MMETSP0890-20130614|38670_1  3 ITVLGATGGTGRHFVKRALKEGQS-LRLIVRSPAKLPEEVKNskNVEIFEGSFTDLDLVDRAIKGS--DAVVSMARGGG 78
                 78**********************.8888888888888887789**********************..****9997654 PP

>> PF01073.14  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.9e-09   1.2e-05       2      74 ..       5      74 ..       4     107 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.9e-09
   PF01073.14  2 VtGgsGFlGrrlvreLleleelkevrvldlrespelleelsklqvktvlegDvtdkekleealegvdvvihta 74
                 V+G++G  Gr+ v++ l+++  + +r++ ++  +   ee++++++ ++ eg  td + +++a++g+d+v+ +a
  MMETSP0890-20130614|38670_1  5 VLGATGGTGRHFVKRALKEG--QSLRLIVRSPAKLP-EEVKNSKNVEIFEGSFTDLDLVDRAIKGSDAVVSMA 74
                 99******************..89**9988877776.8888888888***********************997 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00083       1.6       3      33 ..       7      35 ..       5      54 .. 0.79
   2 !    7.6   0.0   0.00075       1.5     176     212 ..     142     178 ..      50     202 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00083
    PF07993.7  3 GaTGfLGkvllekllrtqpevkiyllvRaks 33
                 GaTG  G++++++ l++ +   + l vR+  
  MMETSP0890-20130614|38670_1  7 GATGGTGRHFVKRALKEGQ--SLRLIVRSPA 35
                 9****************99..7888888543 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00075
    PF07993.7 176 EklvreasrrsglpvviiRpsiivgesetGwiegsdl 212
                  Ek++    + ++l ++i Rp+ iv e ++G + +s +
  MMETSP0890-20130614|38670_1 142 EKVIAFLDKCDDLDWIITRPGLIVDEESKGKLVQSTY 178
                  77777777778999***********999998777764 PP

>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.8e-05      0.11       3      72 ..       3      65 ..       1     108 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.8e-05
                 EEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHH CS
   PF00106.20  3 vliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaalla 72
                 + + G++gg G++ +++ ++e ++ l l+ r+      a+l +e++ +  +v+++    +d d ++++++
  MMETSP0890-20130614|38670_1  3 ITVLGATGGTGRHFVKRALKE-GQSLRLIVRS-----PAKLPEEVK-NSKNVEIFEGSFTDLDLVDRAIK 65
                 5689*****************.7789999999.....444444445.55667777777777766666665 PP

>> PF01118.19  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00023      0.45       2      75 ..       3      75 ..       2     112 .. 0.76
   2 ?   -0.6   0.0       0.7   1.4e+03      30      68 ..     163     207 ..     152     209 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00023
                 EEEB--------HHHHH.HHCTSSEEEEEEEETTTT---BHHHHSG.GGCCCCCEBEEEGCGCCCTC-SEEEE--- CS
   PF01118.19  2 vaivGatGyvGqellrl.LeehpelelvalvassrsaGkklaeahk.aleegkdlvledadeeelkevdivflalp 75
                 + ++GatG +G+ ++++ L+e ++l l++ +  +  +  k +++++    +++dl l d    ++k+ d v++ + 
  MMETSP0890-20130614|38670_1  3 ITVLGATGGTGRHFVKRaLKEGQSLRLIVRSPAKLPEEVKNSKNVEiFEGSFTDLDLVD---RAIKGSDAVVSMAR 75
                 679***********765166677777776555555455555555555666788888888...88889999887655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.7
                  EEETTTT---BHHHHSG.....GGCCCCCEBEEE.GCGCCCTC-S CS
   PF01118.19  30 lvassrsaGkklaeahk.....aleegkdlvled.adeeelkevd 68 
                  l+  ++s+Gk +++ +      +  +++ + +++ +d++++k +d
  MMETSP0890-20130614|38670_1 163 LIVDEESKGKLVQSTYSwasktSYCDIRSASYDNlTDPKAIKTCD 207
                  556677899999999987744333334444444477777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      224  (0.0163839); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.36s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 880.04
//
Query:       MMETSP0890-20130614|38673_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-11   42.5   0.7    5.4e-11   41.9   0.5    1.3  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.5     4e-15   5.4e-11      12      77 ..     157     219 ..     150     220 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 4e-15
                  EEETTCBHHHHHHHT-TTTGTTSS----SSTTEEEEEEHCE.HCC....TTHHHHHHHTTSSEEECCCSBG CS
   PF00111.22  12 vadgettlldaaeenggidipysCggggCgtClvevnegev.qsd....etelegeeldegklrlaCqtiv 77 
                   ++ ++ ll+ ae   gi + y+C+ g+CgtC++++++g+v  +     ++++e+++       l Cq+++
  MMETSP0890-20130614|38673_1 157 PEKSGS-LLELAEAH-GIQVSYACRLGNCGTCVTKILKGSVtYATplaaAADIEDAH------CLLCQAVP 219
                  456677.9****966.*************************8433343455555554......5****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.41s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 795.31
//
Query:       MMETSP0890-20130614|38678_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.042   13.3  17.3       0.57    9.6   0.1    3.2  3  PF01554.13 MatE
      0.079   11.9   1.5       0.35    9.8   0.4    2.1  2  PF06800.7  Sugar transport protein
        8.6    5.9  14.6       0.16   11.4   1.1    3.6  3  PF05969.6  Photosystem II complex subunit Ycf12


Domain annotation for each model (and alignments):
>> PF01554.13  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00013      0.57     105     158 ..       4      56 ..       1      60 [. 0.90
   2 ?    9.3   5.4   0.00015      0.69       7     154 ..     150     305 ..     144     311 .. 0.70
   3 ?   -3.6   0.1       1.5   6.7e+03      93     101 ..     333     341 ..     326     351 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
   PF01554.13 105 eevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyllnip 158
                  ++++  a  y++i +l  p+ ++q v+ ++l +  d+k+pl + l ++ +ln++
  MMETSP0890-20130614|38678_1   4 PALRLDAGIYAQIRGLAAPAALCQSVALSALLALRDAKTPLKVVLGAA-ALNFF 56 
                  566667899************************************999.99986 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00015
   PF01554.13   7 llqvlsslidtlvvgrlgasa.laavsialsilsfifipllglgtalsilvgqalGagnp....erakvsvrvtv....ilsllisvviailillfredilslftedeevlklaakylrililgipllslqlvlsgvlrgagdtkpplyinlislyl 154
                  l+   +++++++ +++ g++  +aa+ ++l+i++++ +++  l+  +++lv   l a +     ++a + +r+t+    il+l  + +ia++  l       + ++d++vl l+ + ++ ++l  + l l++ l g+ +ga d  ++  +  +++ +
  MMETSP0890-20130614|38678_1 150 LARLAGFAAMSVTIASCGSVPlVAAYVLCLNIFFLFAFFAEPLSQTAQALVPPLLEATKKsdtaQEATRNLRKTLanlgILALTAGPLIAFACALVVRLGTPFASSDPQVLDLVFRSIPAVFLMCFQLTLTTSLDGAIVGARDFSWIIACGTCTA-I 305
                  55556788999999999777636*****************************999987762111233333444441110333333333333322223333333446777**********************************999988887776.5 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.5
   PF01554.13  93 fredilslf 101
                  f+ +i++lf
  MMETSP0890-20130614|38678_1 333 FATFIIRLF 341
                  222222222 PP

>> PF06800.7  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.062   2.8e+02      87     111 ..      30      54 ..      23      63 .. 0.88
   2 ?    9.8   0.4   7.6e-05      0.35      45      93 ..     293     341 ..     269     359 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.062
    PF06800.7  87 sLigvlvfgeWstsvqvilGllali 111
                  +L + l++++ +t  +v+lG +al 
  MMETSP0890-20130614|38678_1  30 ALSALLALRDAKTPLKVVLGAAALN 54 
                  688999****************996 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 7.6e-05
    PF06800.7  45 livslisGllwalgQllqfkslklvgvskamPistglQLvgasLigvlv 93 
                  +   +  G + a++Ql+ +++l+l g ++  P+ t + Lv a+ i  l+
  MMETSP0890-20130614|38678_1 293 FSWIIACGTCTAIAQLVALRALTLAGPAVDDPLVTPISLVFATFIIRLF 341
                  5555778**********************************99886555 PP

>> PF05969.6  Photosystem II complex subunit Ycf12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       0.5   2.3e+03      14      21 ..     138     145 ..     137     151 .. 0.73
   2 ?    2.3   0.3     0.025   1.1e+02       6      24 ..     224     240 ..     222     244 .. 0.76
   3 ?   11.4   1.1   3.6e-05      0.16       6      22 ..     305     321 ..     303     321 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.5
                  H------H CS
    PF05969.6  14 lIvlaGPl 21 
                  l+  aGPl
  MMETSP0890-20130614|38678_1 138 LVAYAGPL 145
                  68889998 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.025
                  --THHHHHH------HHHH CS
    PF05969.6   6 iaQLtsLalIvlaGPlVIv 24 
                  +a+L+ Lal  +aGPl+ +
  MMETSP0890-20130614|38678_1 224 LANLGILAL--TAGPLIAF 240
                  577888876..79**9965 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 3.6e-05
                  --THHHHHH------HH CS
    PF05969.6   6 iaQLtsLalIvlaGPlV 22 
                  iaQL++L   +laGP+V
  MMETSP0890-20130614|38678_1 305 IAQLVALRALTLAGPAV 321
                  9***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       632  (0.0462259); expected 273.4 (0.02)
Passed bias filter:                      369  (0.0269895); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.44s 00:00:01.15 Elapsed: 00:00:00.94
# Mc/sec: 1022.28
//
Query:       MMETSP0890-20130614|38683_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-12   44.6   0.3    5.8e-12   44.6   0.2    2.0  2  PF02037.22 SAP domain


Domain annotation for each model (and alignments):
>> PF02037.22  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.2   4.2e-16   5.8e-12       4      34 ..       1      31 [.       1      32 [. 0.95
   2 ?   -3.8   0.1      0.67   9.2e+03      28      32 ..      50      54 ..      49      56 .. 0.72

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 4.2e-16
                 --HHHHHHHHHHTT------HHHHHHHHHHH CS
   PF02037.22  4 ltVaeLKaeLkkrGLptsGkKaeLieRLkeh 34
                 +tV+eL+a Lk+rGL++sG+KaeLi+R +++
  MMETSP0890-20130614|38683_1  1 MTVTELRAHLKRRGLKSSGNKAELIQRALNA 31
                 9**************************8876 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.67
                 HHHHH CS
   PF02037.22 28 ieRLk 32
                 ++RLk
  MMETSP0890-20130614|38683_1 50 VDRLK 54
                 78887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.77
# Mc/sec: 837.17
//
Query:       MMETSP0890-20130614|38687_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-05   22.5   0.0     0.0001   21.8   0.0    1.3  1  PF00535.21 Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> PF00535.21  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.6e-09    0.0001      15     102 ..       7      94 ..       2     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 7.6e-09
                  HHHHHHHT-S---EEEEEEE-S--HHHHHHHGGGGGE------HHHHHS-..HHHHHHHHHHHH----EEEEEETTEEE-TTHHHHHHHH CS
   PF00535.21  15 etlesllnqtypnfeiivvDDgStDetveileeyaksdprvrvirleknv..GkagarnaglkkatgdyilflDaDdepdpdwleklvek 102
                   ++++ l+q+ +++ + ++ Dg   + +eil++y    +r+r+++ e  +    +  r  gl +++g++ ++   D ++ p ++e l ++
  MMETSP0890-20130614|38687_1   7 VMVNCMLAQSSNDWSLTIISDGFEARVEEILNRYG--CDRIRYFSTEFPNndHGHTPREIGLNASRGEWTVLSGIDNYYVPLFVETLKKA 94 
                  57999*****************************6..69999998765444388899************************988877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       267  (0.019529); expected 273.4 (0.02)
Passed bias filter:                      245  (0.0179198); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.77
# Mc/sec: 874.51
//
Query:       MMETSP0890-20130614|38698_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-57  194.6   0.5    2.2e-57  194.5   0.3    1.0  1  PF13871.1  Helicase_C-like
    0.00033   20.3   0.1     0.0032   17.1   0.0    2.1  1  PF00271.26 Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> PF13871.1  Helicase_C-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.5   0.3   3.1e-61   2.2e-57      27     156 ..       2     133 ..       1     140 [. 0.95

  Alignments for each domain:
  == domain 1    score: 194.5 bits;  conditional E-value: 3.1e-61
    PF13871.1  27 vrdedgkvkvekreasdvslesvnlaekqaFmdGeklvaviSdAastGiSlhAdr..raanqrrRvhitlelpwsadkaiQqlGRthRsnQvsaPeyrllvtdlkgekRfastvarrlesLGAltrgdrraa 156
                  vr+ + +++++kr ++ vs+++ nl e+++F++G+klva+iSdAas+GiSlhA++  r++n+rrRvh+tlelpwsadk+iQq+GR+hRsnQ+ +P+y+llv+ l+ge+Rf+++v +rlesLGAlt+gdrra 
  MMETSP0890-20130614|38698_1   2 VRNYKDEFVLQKRTENGVSANEQNLYEREEFQAGRKLVAIISDAASSGISLHAENndRVKNKRRRVHFTLELPWSADKTIQQMGRSHRSNQLVPPQYKLLVSPLGGERRFVAAVTKRLESLGALTQGDRRAN 133
                  67778899*********************************************864489***********************************************************************95 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.7e-07    0.0032      27      77 ..      30      90 ..      17      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.7e-07
                 HHHHTTTSSEEEESTTC-S---STTESEEEESSS...........BSSHHHHHHH------T CS
   PF00271.26 27 eqfnagkskvlvatnvaerGidlpdvnvVinfdl...........prsvtsyiQriGRtgRa 77
                 e+f+ag++ v + +++a+ Gi l + n+   +             p+s +  iQ +GR +R 
  MMETSP0890-20130614|38698_1 30 EEFQAGRKLVAIISDAASSGISLHAENND-RVKNkrrrvhftlelPWSADKTIQQMGRSHRS 90
                 7899*****************99544432.222245677777788****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 486.12
//
Query:       MMETSP0890-20130614|38711_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-09   37.2   0.1    6.1e-09   36.3   0.0    1.5  2  PF02670.11 1-deoxy-D-xylulose 5-phosphate reductoisomerase


Domain annotation for each model (and alignments):
>> PF02670.11  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.42   5.8e+03     102     102 ..      35      35 ..      13      48 .. 0.53
   2 !   36.3   0.0   4.5e-13   6.1e-09       1      30 [.      54      83 .]      54      83 .] 0.96

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.42
                  - CS
   PF02670.11 102 a 102
                  a
  MMETSP0890-20130614|38711_1  35 A 35 
                  2 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 4.5e-13
                 EEEE--------HHHHHHHHTTTTEEEEEE CS
   PF02670.11  1 vviLGsTGSIGtqtLdvieknpdkfevval 30
                 v++LGsTGSIGtqtLd  +++pd+f+v+al
  MMETSP0890-20130614|38711_1 54 VSVLGSTGSIGTQTLDFARARPDHFSVSAL 83
                 78*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      197  (0.014409); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.43s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 292.50
//
Query:       MMETSP0890-20130614|38709_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    6.5  25.4          2    6.4  17.6    1.0  1  PF09770.4 Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PF09770.4  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  17.6   0.00014         2     240     342 ..      17     117 ..       6     136 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00014
    PF09770.4 240 qlqnlq.qqqlpqlsqqmppqpvqppq.qqqqqvlklpqaqppplqqlsaspqlaqqqlaslplpqqpqqkalvqqeqgqqeanqfreqlvqleqqerealseee 342
                  ql+ +q q +++q++q +pp+p++ p+    q+  ++++ + pp+q ++a pq++q  + s++ +qq q+++   ++  +    + ++q++++e+++r+ ++++e
  MMETSP0890-20130614|38709_1  17 QLPYMQqQTPSMQQEQYQPPGPQYGPPfYGGQPLNNQQTGMYPPQQFQQAYPQQQQ--QYSQQYSQQGQNDSAASEP--TMDYYEWQRQQQEAEEKARAEAKKQE 117
                  34444423344555555555555555555555556666666666665555554444..2233333222222222221..22223333444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1531  (0.111981); expected 273.4 (0.02)
Passed bias filter:                      695  (0.0508338); expected 273.4 (0.02)
Passed Vit filter:                        91  (0.00665594); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.43s 00:00:00.96 Elapsed: 00:00:00.61
# Mc/sec: 549.98
//
Query:       MMETSP0890-20130614|38708_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   60.9   4.1    3.3e-16   59.4   2.9    1.7  2  PF09335.6 SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.12   11.9   0.0       0.21   11.1   0.0    1.5  1  PF13328.1 HD domain


Domain annotation for each model (and alignments):
>> PF09335.6  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.11   7.8e+02      46      86 ..      11      55 ..       6      57 .. 0.78
   2 !   59.4   2.9   4.9e-20   3.3e-16       1     122 [.      52     175 ..      49     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.11
    PF09335.6 46 lrrkllsekrveklkkverlverygfsa....llllrllPivprd 86
                   r +++  ++e l+++e  ve  g  a    ++l+  +P +p++
  MMETSP0890-20130614|38708_1 11 RTRLIRNASPIEFLNSIEDTVESGGPAAayalVALADSIPLLPTQ 55
                 567788889999999999999998887777778888888888876 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 4.9e-20
    PF09335.6   1 lPsevllvaaGvlfglllgtlvtllgallgallayllgrylgkkalrrkllsekrveklkkverlverygfsa....llllrllPivprdlvnyvaGl.lrvsfkrFllatfigsipwaflyaylGs 122
                  lP++++++a+G++fgl  g+ ++++g   +all++++gr l+  +  ++++ +  v     v +  +   f      +++lr +P+vp+++ ny++G+ +  +    l++t+ig++p ++ly+  G+
  MMETSP0890-20130614|38708_1  52 LPTQPITIATGAAFGLTQGLAIVAAGQATAALLCFVIGRTLLGPERIERWFGKTVVAV---VNEATNAENFAStvksIIILRQSPVVPFSVGNYALGAaTTAPIQALLTGTIIGCLPLNILYTATGA 175
                  699**************************************99666666777777777...4444433333223344********************9677788******************99885 PP

>> PF13328.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     3e-05      0.21      39      81 ..      77     120 ..      37     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3e-05
    PF13328.1  39 etiiAalLhdvvedtett.eeirerfGeevarlVegvtelkrle 81 
                   ++ AalL  v+  t    e i++ fG++v+  V ++t+ ++  
  MMETSP0890-20130614|38708_1  77 GQATAALLCFVIGRTLLGpERIERWFGKTVVAVVNEATNAENFA 120
                  4678999999999994446******************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       350  (0.0255998); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 1044.81
//
Query:       MMETSP0890-20130614|38707_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28   10.7   2.1       0.67    9.5   1.5    1.6  1  PF14392.1 Zinc knuckle
        0.5    9.8   6.4       0.94    8.9   0.1    2.7  2  PF14447.1 Prokaryotic RING finger family 4
       0.84    9.3  11.2      0.033   13.8   2.5    2.6  4  PF13923.1 Zinc finger, C3HC4 type (RING finger)
        2.8    7.5  10.6        0.8    9.2   0.2    3.3  3  PF13920.1 Zinc finger, C3HC4 type (RING finger)
        4.9    7.1   9.2          3    7.8   2.2    2.9  3  PF04770.7 ZF-HD protein dimerisation region


Domain annotation for each model (and alignments):
>> PF14392.1  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.5   0.00025      0.67      34      48 ..     240     254 ..     238     255 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00025
    PF14392.1  34 CfiCgrlgHsdkeCp 48 
                  C  Cg lgH++++Cp
  MMETSP0890-20130614|38707_1 240 CDGCGELGHDQRNCP 254
                  99************9 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00034      0.94       9      34 ..      35      60 ..      29      61 .. 0.85
   2 ?    1.9   1.4     0.052   1.4e+02      41      49 ..      90      98 ..      80     101 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00034
    PF14447.1  9 pcllcgtvgtkrvllpCgHlvpdetF 34
                  c +c++      ll+CgHlv ++++
  MMETSP0890-20130614|38707_1 35 SCAACNKPLFSALLLGCGHLVDEACY 60
                 57778888888899*********998 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.052
    PF14447.1 41 gCPfCgtrl 49
                  CP+Cg r 
  MMETSP0890-20130614|38707_1 90 CCPVCGDRC 98
                 5*****985 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.5   1.2e-05     0.033       3      45 ..      34      95 ..      32      96 .. 0.76
   2 ?    2.6   0.9      0.04   1.1e+02       3      16 ..      89     102 ..      87     104 .. 0.82
   3 ?   -2.9   0.0       2.1   5.8e+03      33      42 ..     135     144 ..     132     145 .. 0.67
   4 ?   -2.6   0.1       1.6   4.4e+03      26      31 ..     240     245 ..     232     255 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
    PF13923.1  3 fsCpiCleelenpviltpCgHlyCkkCieqwleks........kkk.............CPiCr 45
                 +sC  C++ l ++  l+ CgHl+ + C  +   ++          +             CP+C 
  MMETSP0890-20130614|38707_1 34 LSCAACNKPLFSA-LLLGCGHLVDEACYLRAGIQQatlitsssT-SstqqntdysfafcCPVCG 95
                 79***********.57***********98875554467765550.04566778888888****6 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.04
    PF13923.1   3 fsCpiCleelenpv 16 
                  f Cp+C ++ + pv
  MMETSP0890-20130614|38707_1  89 FCCPVCGDRCTAPV 102
                  67999999988875 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.1
    PF13923.1  33 wlekskkkCP 42 
                  + ++++++CP
  MMETSP0890-20130614|38707_1 135 IRREARASCP 144
                  5555588998 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 1.6
    PF13923.1  26 CkkCie 31 
                  C  C e
  MMETSP0890-20130614|38707_1 240 CDGCGE 245
                  444433 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00029       0.8       4      29 ..      35      59 ..      32      66 .. 0.85
   2 ?    1.9   0.8     0.059   1.6e+02       4      12 ..      90      98 ..      86     106 .. 0.68
   3 ?    0.9   0.1      0.12   3.3e+02      23      41 ..     237     254 ..     227     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00029
    PF13920.1  4 tCvvClereadvlllpCgHlclCeeC 29
                 +C  C +   ++lll CgHl + e+C
  MMETSP0890-20130614|38707_1 35 SCAACNKPLFSALLLGCGHL-VDEAC 59
                 7******************9.65555 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.059
    PF13920.1  4 tCvvClere 12
                 +C+vC +r 
  MMETSP0890-20130614|38707_1 90 CCPVCGDRC 98
                 566666654 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.12
    PF13920.1  23 lclCeeCaerllkrkkkCp 41 
                  l+lC  C+e     +++Cp
  MMETSP0890-20130614|38707_1 237 LILCDGCGELG-HDQRNCP 254
                  579****9877.5778888 PP

>> PF04770.7  ZF-HD protein dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.2    0.0011         3      15      47 ..      10      40 ..       2      41 .. 0.77
   2 ?   -2.7   0.0       2.1   5.9e+03      20      31 ..     196     207 ..     192     217 .. 0.69
   3 ?    1.5   0.1     0.099   2.7e+02      22      30 ..     240     248 ..     227     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0011
    PF04770.7 15 aslGghavDGCgEfmpsegeegtaaalkCaACg 47
                  s  ++ + G  Ef +   + + ++al CaAC+
  MMETSP0890-20130614|38707_1 10 TSANATLTAGLAEFKAR--TASATQALSCAACN 40
                 455556678999**998..456799*******7 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.1
    PF04770.7  20 havDGCgEfmps 31 
                  h vD   Ef+ +
  MMETSP0890-20130614|38707_1 196 HQVDNTSEFVHT 207
                  677888888775 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.099
    PF04770.7  22 vDGCgEfmp 30 
                  +DGCgE   
  MMETSP0890-20130614|38707_1 240 CDGCGELGH 248
                  69***9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      322  (0.0235518); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.83
# Mc/sec: 779.54
//
Query:       MMETSP0890-20130614|38719_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       110  (0.00804564); expected 273.4 (0.02)
Passed bias filter:                       96  (0.00702165); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 691.41
//
Query:       MMETSP0890-20130614|38720_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-58  197.4   0.0    1.5e-58  197.1   0.0    1.0  1  PF02979.11 Nitrile hydratase, alpha chain


Domain annotation for each model (and alignments):
>> PF02979.11  Nitrile hydratase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   1.1e-62   1.5e-58       7     187 ..      29     218 ..      24     220 .. 0.91

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 1.1e-62
                  HHHHHHHHHHHHH-----HHHHHHHHHHHHHTS-TCHHH....HHHHHHHH-HHHHHHHHH---HHHH.C----TTTT...SEEEEEE-BTTEEEEEE-TTS----TTT-----CGGGSHHHHHHTTTSHHHHHH.H------TTSEEEEEE--SSEEEEEE-----------HHHHHHT--HHHH---- CS
   PF02979.11   7 earvkaleelliekgliteeavdalielletkvgpanga....kvvakaWvdpefkarlledataaik.elgvkgaqg...eelvvventpevhnvvvCtLCsCypwpvLGlpPeWykspeyRsrvvrepRkvla.efglelpedvevrvwDstaelRylvlPerPagteglseeeLaelvtrdsliGva 187
                  e+++ al + l +kg ++ e  ++++e++e+  +p ++     ++va+aW +p+f +rll da aa+k +++++++++   ++lv+v+ntp+ hn+vvCtLCsCyp +vLGl+P+Wyk+  yR+r+v++pRk+l+  fgl+lp+d++++v Dsta+lRy+v+Pe P  ++ +se eLa+ vtrds iG++
  MMETSP0890-20130614|38720_1  29 ERLTSALLTALHNKGHLDLELFRHVVEAVENLAAPLQSDaiapRLVARAWKNPDFMSRLLIDAAAALKhDFDFDATNStapTKLVAVANTPQCHNLVVCTLCSCYPLSVLGLSPSWYKDVVYRARAVKQPRKLLKdSFGLHLPDDIQINVLDSTADLRYIVIPEPPPDSDIYSEVELAARVTRDSCIGTG 218
                  5678999************************99987653222389*********************9735666555433339****************************************************966***************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.70
# Mc/sec: 801.07
//
Query:       MMETSP0890-20130614|38727_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-68  230.8   0.0    3.7e-68  230.2   0.0    1.1  1  PF00136.16 DNA polymerase family B
  ------ inclusion threshold ------
        1.6    8.2   4.6        6.5    6.2   0.2    2.5  2  PF14445.1  Prokaryotic RING finger family 2


Domain annotation for each model (and alignments):
>> PF00136.16  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.2   0.0   5.4e-72   3.7e-68      51     451 ..      56     449 ..      52     461 .. 0.87

  Alignments for each domain:
  == domain 1    score: 230.2 bits;  conditional E-value: 5.4e-72
                  HHHCCCEE.EEEETTHHHHHHHHTTHCTTTBCHCHHCSSEEEHCHH..-HHCEC.......CTS-BSSHHHH--SHHHCHHHHHTHHHHHCHHCCHHHH..HHHHHHHHHHHHHHHHHHH------TTSTT--HHHHHHHHH---HHHHHHHHHHHHC..HH-EEEEEETTEEEEETHH...HHHHHHHHHHHHHHHHHHHCCHHTEEECCCEEECEECCTTEEEEE-TCCEEEE......E-----SSSBTHHCHCHHHHHHHHHHTT--CCEC.CCCCCHHHHHHHC.........CCHHHHCCHCHHHHHHCCCE-SCHHHHCCHHHHHCHHHHHCCCCE--STHH..HTEEEEEEB---TTT--ECCHHHCTTTT.......-CSSSCCHHTCCHCCCCCHHHC..-- CS
   PF00136.16  51 kglyenpvlvlDFaSLYPSiiiahNlcystlvdedeeeakkleaereldvlkvvvgskvrerfvkkgvresilpelledllaarkevkkalkesedeek..lralldkqQlalKvtaNSvYGftGvsngrlpclpiAasvTaiGRkmlektkdyveekgelnvkviYGDTDSvfvkfggkdaeeavklgeelakevskklfrkpiklEfekvfkallLisKKkYiglklgkdgkiedkllmkGvdlvRrdnckfvkevvrkvldlllkdksveeaakelkeviieilkn.........lekklkknkvevedlvitkelskdpsaykkkqnphvevalrlkkrgreeapevgdrisYvivkesskaekakqselaedpeyvkenklpidaeyylekqllkpverifeavfgn 451
                   gly++p++vlDFaSLYPSi iahN+cystl+ +    +k+++++      ++++ +++ ++fv +g+r ++lp+ll  ll++r ++k al+++    +  +++ ld +QlalK +aN++YG+tG +++ l+ +p+A+++  +G ++ + ++++++e +    +viY  TDS+fv + g ++e+av  g++la++v+k+++  p++lEfe v+++++L++ ++Y+g+ l++++    +l +kG+  v r +  f+++v r++l   l +++ ++a+++ +  i++ l                ++   +++++ + k l+  +s+    + phv++a rl   +  +  + g+ ++++i     +a  a q + aedp  v  ++lp++ + yl+++l++ +er+f+a+  +
  MMETSP0890-20130614|38727_1  56 AGLYDDPIAVLDFASLYPSIFIAHNICYSTLLLD----RKEVKEN------YHACPGGK-HFFVDSGTRLGLLPRLLSGLLTKRTAAKRALRDAVARGDsaAADCLDARQLALKMCANATYGYTGSEVSSLHGKPLAEACLRWGNYYCRSAARIIHEEDSISRQVIYAQTDSMFVLLSGMNYENAVIEGRRLAEHVTKSMKIYPLRLEFERVLQPFVLVQVNRYAGVELQGSS---RRLHVKGIG-VDRGAPSFIRRVLRNCLVNALLQRDLSKAKSRAELAIKSLLAGhvdideltlGAFLWRQDHDDIKRMSLGKNLT--KSDTDALKTPHVALATRLLTSEPLRTFRLGEFVPFIIAFR-PNATAATQANNAEDPHIVLGRSLPVNLNLYLQNKLRPELERLFSALHIQ 449
                  69********************************....4777765......34566777.8******************************998777667789******************************************************98899*******************************************************************6444...46*****97.567899**********9999999999988666664444444446655553213333334444788888888887..5555566678*************99************998.69999***************************************98765 PP

>> PF14445.1  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2   0.00094       6.5      12      52 ..     159     200 ..     148     203 .. 0.80
   2 ?    3.1   0.3     0.009        62       8      29 ..     613     637 ..     607     641 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00094
    PF14445.1  12 lCrtsae.laelrqCvlCgrwqCaaCWddeygvCkrCggvip 52 
                  +C  +    ++     l g++  +aC    ++ C++ +++i 
  MMETSP0890-20130614|38727_1 159 MCANATYgYTGSEVSSLHGKPLAEACLRWGNYYCRSAARIIH 200
                  665554446666677778999999***************996 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.009
    PF14445.1   8 geCdlC...rtsaelaelrqCvlCg 29 
                  ++C +C   + s + a+   C +Cg
  MMETSP0890-20130614|38727_1 613 WTCRVCtydHYSPSEADFLSCAICG 637
                  5677772223455688888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       352  (0.0257461); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.43s 00:00:01.41 Elapsed: 00:00:00.76
# Mc/sec: 2024.29
//
Query:       MMETSP0890-20130614|38728_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 373.20
//
Query:       MMETSP0890-20130614|38718_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-36  124.5   0.0    4.7e-36  124.1   0.0    1.2  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.0   3.4e-40   4.7e-36       2     158 .]      46     231 ..      45     231 .. 0.97

  Alignments for each domain:
  == domain 1    score: 124.1 bits;  conditional E-value: 3.4e-40
                  EEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTHHHHTTHCESEEEEESSHHHHHHHHHHCCCCE...EEEEE.GGGSHHHH----TTCHHHHHHHHHCHHHHHHHHCCTSTTT.........................SS.CHHHHHHHHHHHHHHHHH.HCTTTSEEEEEE-TTHHHHH CS
   PF00300.17   2 lylvRHGeselnkegrlqgwsdvpLtekGreqarelgkkLkradlqidavytSplkRaiqTaeilleeld...ipiiqeprLrerdfgeweglpkaevkeelpeeyekwkrdkkefrpp.........................egesladvyeRvapfleelie.akdkgenvlivsHggvlral 158
                  l+l+RHGes++n  g ++gw d pL+e G+++are g+ Lk++++++d +ytS lkRai T+++ lee+d   +p+ + +rL+er++ge++g++k+++ +e+++e+ +++r+++++ pp                         ++esl+ + +R+   +e+ i+ a  +g+++li +Hg++lral
  MMETSP0890-20130614|38718_1  46 LVLLRHGESTWNDLGLFTGWFDCPLSEAGIAEAREGGRLLKEEGIEFDLAYTSYLKRAISTLWLALEEMDqqyVPTVKSWRLNERHYGELQGKDKKQTVAEFGNEQVQIWRRSYDVPPPacsldsehfpgndrkyknvpiedlpRAESLKITEDRFLIEWENTIKpAIISGNKILIAAHGNTLRAL 231
                  89**************************************************************888788899******************************9*******9********************************99*******************9******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       251  (0.0183587); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.77
# Mc/sec: 946.09
//
Query:       MMETSP0890-20130614|38732_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   12.3   0.7       0.05   12.0   0.5    1.0  1  PF04317.7 YcjX-like family, DUF463


Domain annotation for each model (and alignments):
>> PF04317.7  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   3.7e-06      0.05     307     441 ..      12     143 ..       7     144 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.7e-06
    PF04317.7 307 dkllfaAtkaDhvteeqhenlvalleq.lveearkraefegaevevlalaavrateeatvkeegeelevvrGtelaekkevalfpGevPeklpeaefwqkqefefvrFePakleeekeeslpHirlDralqfLlgD 441
                  d+ll+ A      ++++  +l+a ++  l+++++++ + +  + +  +l+++r+  ++ +++ + e + v G ++ +k+e +    e+P+  ++++f ++++ ++++ +P+++     +  pH ++D+al+ +l D
  MMETSP0890-20130614|38732_1  12 DQLLLRALEPSATARDNALRLHAWIQPwLMKRQTNKSKPARLKSSRSTLSTLRTHVTHLLQNVNVESNSVIGSTQITKQERRQPNIELPRANTRHAFNDTHATTVDDRNPTSQ----VQVRPHHKVDKALNDMLTD 143
                  677777777777888888889887775378999999999************************************99999999999*********************999986....7788999******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       686  (0.0501755); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.86
# Mc/sec: 443.05
//
Query:       MMETSP0890-20130614|38735_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.0   0.0    0.00027   20.0   0.0    1.0  1  PF04157.11 EAP30/Vps36 family


Domain annotation for each model (and alignments):
>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     2e-08   0.00027     150     216 ..       2      66 ..       1      71 [] 0.88

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2e-08
                  -T-EEEE-SSS-EEEEESS.CH--HHHHHHHHHT..TT---B-HHHHHHHHSB-SHHHHHHHHHHHH CS
   PF04157.11 150 lgiklvklgsgvlvvqttpdselsadqskileyvlseqeggvseselaeklnwsigraeeaLeklvk 216
                  ++++l+ ++sgv+v++ + +  + ++ +++++++ ++q  g+s+++ ++ l++++ +a++ L ++++
  MMETSP0890-20130614|38735_1   2 SPLELIIFPSGVKVLRPVASRKQ-NVFKTLINAA-HSQTLGISALDASNILHVPVVLAKQHLLDAEA 66 
                  6899999************6665.8888888888.8**************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.66
# Mc/sec: 257.79
//
Query:       MMETSP0890-20130614|38745_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-11   43.3   0.1    3.7e-11   42.7   0.0    1.3  1  PF00156.22 Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.7e-15   3.7e-11       4     125 .]       2     125 ..       1     125 [. 0.79

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 2.7e-15
                  EE----HHHHHHHHHHHHHHHT----EEEEEE------HHHHHHHHHHHHHH-----SS-SEE---------EEEE...ES-GGGGTTSEEEEEEEEE----HHHH---TTTT--.--EEEEEEEE CS
   PF00156.22   4 lldpedlreagrllaeklreekgkkdvvvGiargGvplatelaraLglpldlvrvrkssapassetsrkreaaile...srpeedlkgkrvliVDDvlatGgTlraaielLkeag.akevgvavlv 125
                  +l++ +++e ++ l e +r+++ ++dv++ ia gG  +  +l  +L++p+  v+ + + +++++++++  ++++++         ++gkrvliVD v +t +Tl   +e + + + ++ + vav++
  MMETSP0890-20130614|38745_1   2 YLSYAQVHETISSLVEPIRKNF-QPDVIISIAGGGACPSRVLRTQLKIPILTVALELY-DDNTNSRHTTVRKTQWFdetTGVGQRVRGKRVLIVDEVDDTRTTLAFCVEEIMKTNaPAAIAVAVVH 125
                  67999************99965.6789************************9997654.44444444444444443011346789************************88866648888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.92
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|38736_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      457  (0.033426); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.42s 00:00:01.13 Elapsed: 00:00:00.99
# Mc/sec: 968.23
//
Query:       MMETSP0890-20130614|38751_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.3   0.1        2.6    7.8   0.1    2.0  2  PF01113.15 Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> PF01113.15  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0059        80      10      36 ..       3      29 ..       1      46 [. 0.70
   2 ?    7.8   0.1   0.00019       2.6       3      28 ..      49      73 ..      47      74 .] 0.89

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0059
                 -----HHHHHHHH.---EE-EE----- CS
   PF01113.15 10 GrmGkevikaieeaedlelvaavdrke 36
                 Gr G  ++ a++  ++ +l+a+v++++
  MMETSP0890-20130614|38751_1  3 GRCGIPLVAAAQGCDERNLSAVVHARD 29
                 777777777777777777777777665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00019
                 E--B--------HHHHHHHH.---EE CS
   PF01113.15  3 vavvGasGrmGkevikaieeaedlel 28
                 +a+vGa G +G ++i+ai eae++ l
  MMETSP0890-20130614|38751_1 49 LALVGA-GFIGGHLIDAIAEAERMLL 73
                 789**9.*************999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 253.33
//
Query:       MMETSP0890-20130614|38753_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   14.9   0.4      0.018   14.9   0.3    1.8  2  PF04695.8 Peroxisomal membrane anchor protein (Pex14p) conserved region


Domain annotation for each model (and alignments):
>> PF04695.8  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.3   1.3e-06     0.018      50     115 ..     105     169 ..      93     179 .. 0.80
   2 ?   -1.9   0.1      0.21   2.8e+03      51      51 ..     235     235 ..     205     272 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-06
    PF04695.8  50 seatsstaateaaqstsesstpsdnysnqsssssststpqsqqsyyqqppplvperdwrdllimat 115
                  s+ t s ++  +++++++++ + ++y++++++++s+   +++q y q p++ +p  +w d+l++a+
  MMETSP0890-20130614|38753_1 105 SN-TTSCTSHDEDSEEEDEEFDYKSYEPSQPPEPSNVGVSATQRYRQVPQTTFPLDEWADFLVTAI 169
                  22.55777888888899999999999999999999988888888877777777**********986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.21
    PF04695.8  51 e 51 
                   
  MMETSP0890-20130614|38753_1 235 F 235
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.37s 00:00:00.96 Elapsed: 00:00:00.85
# Mc/sec: 792.21
//
Query:       MMETSP0890-20130614|38749_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-91  305.6   0.0    6.6e-91  305.3   0.0    1.0  1  PF07971.7 Glycosyl hydrolase family 92


Domain annotation for each model (and alignments):
>> PF07971.7  Glycosyl hydrolase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.3   0.0   4.8e-95   6.6e-91      78     500 ..       2     424 ..       1     425 [. 0.86

  Alignments for each domain:
  == domain 1    score: 305.3 bits;  conditional E-value: 4.8e-95
                  HHHHHTTSSEE--EE---....--.-EE-......---..EE-B--TTTTTTHHHHHHHH-HHHHHHHHHHHHHHHHH-----SSB-----.------THHHHHHHHHH-----S-HHHHHHHHHHHHHSS-TT--...----HHHHH--..---.....TTTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTGGGGGGGB-TT---B--B-----B-SS--T....T----------HHHHTT--.TT-----TTT----HHHHHHHHHHS-----TT-----..HHH--------GGGTTGGGGGGG---HHHHHHHHHHHH..HHS----------------HHHHHHHHH---B-S-----EEE----SSSEEEEE-.....----EEEEE-T-BT..T-EEEEEEE---B---SEEEHHHHH----EEEEEES CS
    PF07971.7  78 alYrtllapqefsdvdge....Yr.gadskkkak.geekyydsfslWDtfRalhplltlldperasemvrslldiyreegwlpdwrlsgeetgtmgGsnadsviadayvkgirgfdvekayeavkknaeeeppsweeegrgglksykklg..YvpakeekvsesvSrtlEyaynDfaiaqlakalgkeedaekylkrsknyrnlfdpetgflrprnadGswaepfdpl.sgkewgedftEgnawqysffv.phDvagLielmggkeafakrLdelfeeessaseeesa..tgligqyahgNepsfhvpylynyagepwktqelvreil..kelynatpdGlpGneDlGqmsawyvfsalGlYpvtpgsdeYligsPlfekvtirl.....engktltikaknnskeniYvqsvklnGkeltknwltheellkGgeLefelga 500
                  alY+tll p+++sdvdg     +  ++  + k++ +++   ++ s WD+fR+++p+ltl+ p++a+  ++s++++++ +  lp+w l+ +et++m+G++ +++i++a++kg+ + + ++  + + ++ +         +++ + +y+k+g  Y p  ++++ e+vS +lE a++D ++a++ +a g +  a ++++r++ y+++fd+++ ++r+ +++  +  p++   s+++ ++dftEg+a qy f+    D  gLi+l+g  e++ krLd+lf+ +  + ++     tg igq   gNe  +hvpylyn + + ++tq+++++il  ++l+ + pdGlpGn+D+Gq+sa++++salG+Yp +p s+++++g+P+++ v+++l     +n+k l+i a+n+ +++ Yvqsv l+G +l++++l h+el++G  +ef +++
  MMETSP0890-20130614|38749_1   2 ALYHTLLTPNTISDVDGTaplvFApSF--R-KEHpSWT--VSTLSTWDIFRTQFPWLTLFVPSAAKATADSMIRYATISQRLPKWLLAESETDVMIGYHGVAIITNAFLKGLVSSKHAAIHTILATTSS---------NNEPVVYYHKRGerY-P--SRDHVEAVSTGLEIAVDDTCAARVMEANGLRGHAIRLARRGSLYQAYFDNASSYFRGDDTEH-FD-PYEFHySNRKNAHDFTEGSAAQYFFTPaLVDPIGLIRLLGSVEEMKKRLDALFDPTFLRIQHGARdvTGCIGQCCLGNEVVHHVPYLYNAIRRFDLTQRRINDILlnSNLFGSGPDGLPGNDDCGQISAFLLLSALGIYPADPCSTVWQLGRPIVRAVNLTLgsidqNNKKILRIIAHNQAPNHPYVQSVYLDGMKLSRSYLYHSELIAGPLIEFFMSP 424
                  8*****************555533122..1.2222544..6668*******************************************************************987665544444433333.........245577777766323.4..5778889*************************************************988765.55.444432345567*************96389************************9555444333379************************************9855689**************************************************999999555556*********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.72
# Mc/sec: 1687.43
//
Query:       MMETSP0890-20130614|38755_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-23   81.5   0.0    1.1e-22   80.0   0.0    1.8  1  PF04607.12 Region found in RelA / SpoT proteins


Domain annotation for each model (and alignments):
>> PF04607.12  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   8.3e-27   1.1e-22       2     112 ..     379     498 ..     378     501 .. 0.90

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 8.3e-27
                  ----HHHHHHHHHH---CCCCCCC-S--E-EEEEESS.............TTHHHHHHHHHHT-SSSEEEEEEEES---------EEEEEE------EEEEEEEEEEEHHHHHHHH..HHHHHHHH CS
   PF04607.12   2 RvKsiysiieKlrrkgkveekfeeitDligiRvivef.............kddcykvlelvkklwdpkpkrfkdyiaepkengYrslHtvveaekgeekvlvEiQiRtiemeawae..iehhlrYk 112
                  RvKs++s ++K+ r g   +k   ++D++g+Rviv                   y+v++   +lw+  p+rfkdyi++pk+ngYrs+Ht+v      ++ ++E+QiRt++m+ +ae   ++h  Y 
  MMETSP0890-20130614|38755_1 379 RVKSPASALRKMLRAGA--SKRGAVRDMLGLRVIVLPsddnqnsswydadLPCLYAVYRAAIELWTELPGRFKDYIRNPKPNGYRSIHTTV----WMDELPCELQIRTLAMHTVAEtgRASHALYS 498
                  **************997..7999************655678889999887777899999999*****************************....66679****************8878888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       308  (0.0225278); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.38s 00:00:01.22 Elapsed: 00:00:00.59
# Mc/sec: 2270.45
//
Query:       MMETSP0890-20130614|38752_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-11   43.3   7.7    7.4e-08   31.8   0.5    2.5  2  PF13414.1  TPR repeat
    1.4e-06   27.5   2.9    0.00052   19.3   0.0    3.4  3  PF00515.23 Tetratricopeptide repeat
    1.8e-06   27.2   7.1     0.0022   17.6   0.0    3.6  3  PF07719.12 Tetratricopeptide repeat
     0.0032   16.7   1.2      0.013   14.7   0.9    1.9  1  PF00179.21 Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
        0.3   10.9   6.8        0.1   12.4   1.0    2.4  2  PF13424.1  Tetratricopeptide repeat
       0.37   11.4  11.8        1.5    9.5   1.0    3.9  3  PF13428.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   3.9   5.8e-08   0.00013       5      67 ..       2      75 ..       1      76 [. 0.94
   2 !   31.8   0.5   3.3e-11   7.4e-08       5      69 .]      48     114 ..      44     114 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 5.8e-08
    PF13414.1  5 alkelGnalfkegdydeAieayekAleldpnnae............lyynlAlaylklgkdyeeAledyekAlel 67
                 +l+++Gn+l++e d ++A  ay++A++l ++ a+             ++nlA+a l+++ ++  A + +++A+e+
  MMETSP0890-20130614|38752_1  2 TLRQRGNKLLEEDDAKGAALAYREAISLAEEEAKkndkeikklwvaNLLNLAAAELRMN-EFILAEKSATEAMEI 75
                 5899************************99988888999***999999**********8.69**********997 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3.3e-11
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpn.nae..lyynlAlaylklgkdyeeAledyekAleldP 69 
                   l +l+ a ++++++  A++  ++A+e++ + +++  ++y++A a ++l  d+e A+ed++ A++ldP
  MMETSP0890-20130614|38752_1  48 NLLNLAAAELRMNEFILAEKSATEAMEICDDeTPNvkALYRRAVARRHLS-DFEGAYEDLQTAMRLDP 114
                  578999**********************766544455************9.7***************9 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.036        83       5      32 ..       4      31 ..       1      33 [. 0.86
   2 ?    3.7   0.1      0.02        46       4      31 ..      49      76 ..      49      78 .. 0.91
   3 !   19.3   0.0   2.3e-07   0.00052       1      33 [.      83     115 ..      83     116 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.036
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHT CS
   PF00515.23  5 ynlGnaylklgkydeAleyyekALelnP 32
                  ++Gn +l+  + + A  +y++A++l +
  MMETSP0890-20130614|38752_1  4 RQRGNKLLEEDDAKGAALAYREAISLAE 31
                 579999999999999*********9976 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.02
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23  4 lynlGnaylklgkydeAleyyekALeln 31
                 l nl++a l+++++  A++   +A e+ 
  MMETSP0890-20130614|38752_1 49 LLNLAAAELRMNEFILAEKSATEAMEIC 76
                 57******************99999985 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2.3e-07
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                  +kaly++++a ++l +++ A e+ + A +l+P 
  MMETSP0890-20130614|38752_1  83 VKALYRRAVARRHLSDFEGAYEDLQTAMRLDPR 115
                  58******************************5 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.4    0.0011       2.5       4      32 ..       3      31 ..       1      33 [. 0.92
   2 ?    3.8   0.1     0.026        59       4      32 ..      49      77 ..      46      79 .. 0.91
   3 !   17.6   0.0   9.5e-07    0.0022       2      33 ..      84     115 ..      83     116 .. 0.96

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAleldP 32
                 l ++G+ +++ +d + A+ a+++A++l+ 
  MMETSP0890-20130614|38752_1  3 LRQRGNKLLEEDDAKGAALAYREAISLAE 31
                 789***********************986 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.026
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAleldP 32
                 l nl+ a ++++++  A++   +A e++ 
  MMETSP0890-20130614|38752_1 49 LLNLAAAELRMNEFILAEKSATEAMEICD 77
                 789**********************9975 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 9.5e-07
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  +aly+++ a ++l d+e A e+++ A +ldP+
  MMETSP0890-20130614|38752_1  84 KALYRRAVARRHLSDFEGAYEDLQTAMRLDPR 115
                  79*****************************6 PP

>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.9   5.7e-06     0.013      21     112 ..     215     323 ..     201     352 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.7e-06
                  EEET.TECCEEEEEE---TTSTTGGB-.EEEEEE--TTTTTS--EEEESS--SCTTB-.----B..............-HGGGSTTT--TT--HHHHHHHHHHHHHS-.- CS
   PF00179.21  21 vved.snllewkvvikgpegtpYeggl.FklkikfpeeYPfkPPkvkfvtkifHPnvd.etGei..............cldiLkeekWspaltlesvLlsiqsllaep.n 112
                  +     nl+  +v i++  ++pY g    ++++ f +e+P  PPk++ v+ + H n + ++ +                l ++++++   + tl+++L++i + l+ p  
  MMETSP0890-20130614|38752_1 215 LNTTvINLKYVDVYITPNTNSPYFGVSpLEFRLVFGPEWPKFPPKIRAVSLLAHSNFNgPRRSHnahharratpefyeAL-LMNTQNEDTSFTLHQILIEIKKALNAPpV 323
                  22222489999************996548*********************999999875433333444444444444322.33344455677777777777777766653 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.1    0.0008       1.8       8      77 ..       3      77 ..       1      78 [. 0.77
   2 ?   12.4   1.0   4.4e-05       0.1       4      76 ..      46     113 ..      43     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0008
    PF13424.1  8 lnnlalvlrrlgdydeAlelyekalel.lrelgdd....hpdtaralnnlanlylalgdydeAleylekAleiae 77
                 l + ++ l+++ d + A   y++a+ l  +e++ +       ++  l+nla + l+++++  A++   +A+ei+ 
  MMETSP0890-20130614|38752_1  3 LRQRGNKLLEEDDAKGAALAYREAISLaEEEAKKNdkeiKKLWVANLLNLAAAELRMNEFILAEKSATEAMEICD 77
                 66677788888888888888999999977777553133344445579*************************985 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.4e-05
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  +a++l nla + +r+ ++  A++   +a+e++    d+ p+ ++al+  a + ++l d++ A e l+ A++++
  MMETSP0890-20130614|38752_1  46 VANLL-NLAAAELRMNEFILAEKSATEAMEIC---DDETPN-VKALYRRAVARRHLSDFEGAYEDLQTAMRLD 113
                  56666.*************************7...566777.7888888888888888888888888888775 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.093   2.1e+02       4      34 ..       3      33 ..       1      36 [. 0.86
   2 ?    3.9   0.0     0.041        94       3      31 ..      48      76 ..      46      81 .. 0.85
   3 ?    9.5   1.0   0.00067       1.5       2      39 ..      84     121 ..      83     126 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.093
    PF13428.1  4 llalarallalGdpdeAiallrralalaPdd 34
                 l+++++ ll+  d ++A+ ++r+a++la ++
  MMETSP0890-20130614|38752_1  3 LRQRGNKLLEEDDAKGAALAYREAISLAEEE 33
                 677888899999**************99876 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.041
    PF13428.1  3 allalarallalGdpdeAiallrralala 31
                  ll la+a l+++++  A++ + +a + +
  MMETSP0890-20130614|38752_1 48 NLLNLAAAELRMNEFILAEKSATEAMEIC 76
                 5899****************999987765 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00067
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaeall 39 
                  +al+++a a ++l d+++A + l+ a +l+P +a ++ 
  MMETSP0890-20130614|38752_1  84 KALYRRAVARRHLSDFEGAYEDLQTAMRLDPREALFRQ 121
                  699*****************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       605  (0.044251); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.06u 0.40s 00:00:01.46 Elapsed: 00:00:00.85
# Mc/sec: 1821.23
//
Query:       MMETSP0890-20130614|38756_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.2   0.1    2.5e-09   36.6   0.0    1.4  1  PF08123.8  Histone methylation protein DOT1
  ------ inclusion threshold ------
      0.019   13.9   0.0      0.027   13.4   0.0    1.3  1  PF02390.12 Putative methyltransferase


Domain annotation for each model (and alignments):
>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.7e-13   2.5e-09      23     133 ..      38     145 ..      23     182 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 3.7e-13
                  ---B-HHHHHHHHHHTT--...---EEEEE------HHHHHHHH----EEE--B--HHHHHHHHHHHHHHHHHHHH-------B---SS-STT-HHHHHHGGG-SEEEE--TT- CS
    PF08123.8  23 YGEllpeflsevldkvnlk...kedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklfGkklakiefirksFvenekveeiieeadvilvNNfaF 133
                  YGE+ +  + ++++   l+   k +vF+DLGSG+G+vvl aa + + ++++GvE+ +   el+ + ++++++   +    ++ki f+r++  + ++      +ad+i+    +F
  MMETSP0890-20130614|38756_1  38 YGETGYVATRRIVEA-GLEhgcKGEVFIDLGSGMGKVVLGAAIAHHFQMCIGVEKLEGLYELSLELQKQFEATDLIDSRLKSKILFSRSDLFQFDVS-----NADLIYCHTALF 145
                  888888887777764.333123789**************************************9999999886555555566777777776655543.....344444444444 PP

>> PF02390.12  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     4e-06     0.027      21      51 ..      55      91 ..      21     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4e-06
                 -......EEEE--------HHHHHHH-TTSEEE---S CS
   PF02390.12 21 k......lvleIGfGsGdflvalAkknPdklflGiEi 51
                 +      +++++G+G+G++++  A ++  + ++G+E 
  MMETSP0890-20130614|38756_1 55 EhgckgeVFIDLGSGMGKVVLGAAIAHHFQMCIGVEK 91
                 15555559****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.51s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 1011.34
//
Query:       MMETSP0890-20130614|38759_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-11   41.4   0.1    1.4e-10   40.6   0.0    1.4  1  PF00168.25 C2 domain
  ------ inclusion threshold ------
       0.07   12.7   0.0       0.13   11.8   0.0    1.3  1  PF07234.6  Protein of unknown function (DUF1426)


Domain annotation for each model (and alignments):
>> PF00168.25  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.1e-14   1.4e-10       5      77 ..      24      93 ..      21     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 2.1e-14
                 EEEESS--S-STSSSS-EEEEEEEECTTEEEEEE--BSS-SSEEEEEEEEEEESCGGGTEEEEEEEECHSSSC CS
   PF00168.25  5 vieAknLpnkdkngtsdpyvkvslggakskkkrTrvikntlnPvWnekftfevvaeelaeleleVkdedrfgk 77
                 ++e    +n+d  ++sdpy+kv  g+   +++ T++++n ++P W+e+f +  v  + ++++++++d+d   +
  MMETSP0890-20130614|38759_1 24 IVESASVKNRDTGSKSDPYCKVIAGS---TERSTSTKNNDNHPHWDETFDMGCVSINGTTITIHCFDDDGPAN 93
                 5566678899****************...778********************88888888*******998665 PP

>> PF07234.6  Protein of unknown function (DUF1426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.13      20     101 ..     445     525 ..     442     531 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.9e-05
    PF07234.6  20 aifiaitilyillvlllevpkyikelvrylveyltrrrvwmqrtqlteatGdaelvravvedrrdqqpavvpsaprviapiq 101
                   i+++i +++i+++l+     y + +     e l rrr +  ++ ++e t +  +v++++        + +++ p++ +p+q
  MMETSP0890-20130614|38759_1 445 WIILSIFLVFIIIALVAGCAYYARFVRTPGSEILIRRRPYSAHSVVSEQTFEMGVVESIGYHDD-SSSSSIDQQPPILSPVQ 525
                  57889999*****999999988888888899***************************997554.44455566666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       561  (0.0410328); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.48s 00:00:01.31 Elapsed: 00:00:01.17
# Mc/sec: 1097.82
//
Query:       MMETSP0890-20130614|38762_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      370  (0.0270626); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 328.64
//
Query:       MMETSP0890-20130614|38760_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-60  203.3   0.5    2.5e-58  197.3   0.0    2.4  2  PF00012.15 Hsp70 protein
    2.6e-08   32.7   3.8    1.1e-05   24.1   0.0    3.2  3  PF06723.8  MreB/Mbl protein
    0.00046   19.7   0.0     0.0012   18.4   0.0    1.7  1  PF02782.11 FGGY family of carbohydrate kinases, C-terminal domain
  ------ inclusion threshold ------
      0.055   13.5   0.3       0.15   12.1   0.0    2.0  2  PF08910.5  C2 domain of Aida


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.1    0.0028       9.7       1      18 [.     226     243 ..     226     250 .. 0.87
   2 !  197.3   0.0   7.2e-62   2.5e-58      46     379 ..     304     686 ..     296     693 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0028
                  EEXEEXXXXEEBXEEEXX CS
   PF00012.15   1 viGiDLGttnsvvavmeg 18 
                  +iG+DLGttns+ av+ g
  MMETSP0890-20130614|38760_1 226 AIGMDLGTTNSAGAVVLG 243
                  69**********999855 PP

  == domain 2    score: 197.3 bits;  conditional E-value: 7.2e-62
                  XXXCCC..TTTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS..XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX..........................XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS.XGGGSHHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEE......EETXT...EEEEEEEEHHHHHHHCHHHHCTTTHHHHHHHHHCTX.............XCCCESEEEEEXXETTSHHHHHHHHHHTXXXEEX.....SSXTTTTTTXXXTTCHHHCSS CS
   PF00012.15  46 vGeaAk..rqavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgek.vtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkd.........................kernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegidlskdkkalqrLreaaekaKkeLSsssqteinleiet......ldedg...kdlsekltRakfeeLvedllertlepvekalkdakl.............kkeeidevvlvGGstRiPkvqelvkelfgkepsk.....svnpDeavAiGaAvqaavlsg 379
                  vG++A   r+ ++ ++ +   vkr++Gr+ +  ev + +++   ++ ++ + ++ +++ al  k+k ++ +isa++ +++k++ + +l+ +  + +v+ vPa F+++ R++t+ A  +AG++ + ++ ep aa laY  +++                           ++++lvfDlGggtfdvS++e+     ++ a  gD +lGG+dfD+al+e+l+ +f + +++ ++    a  rL ++ae+ K+eLSs+++ ++n  + +      + + g    +l+e+l Ra fe++++++l+  +++  ++l+da+              kk ++d+v+lvGG+tR+P v  ++k+++g +++k     ++npDeavA+GaA+ a+ l  
  MMETSP0890-20130614|38760_1 304 VGKEAEflRNSAQHAASVCSRVKRIMGRDATAAEVRRVSSTN--TLLEN-KTEVLISIPAL--KHKIAAVDISAEIARQVKRDCDLFLSPRyASRCVVGVPARFDQSARENTRTAVLLAGFDDVELIQEPEAAVLAYAAQRSIlaaqrennkawswwsfltgahtkdiIPEIMLVFDLGGGTFDVSVVELTGSEARLIAIGGDAKLGGDDFDAALAEYLALRFYEIHNVAIRAP-TARLRLLTEAERCKRELSSKTSVTANARCLArvskhgTRARGgrcLHLNETLDRATFESICRPILRDLEKAAMSVLEDASTvlysndrtsspstKKIKLDAVLLVGGATRMPCVGRMLKKITGLPLEKivandALNPDEAVALGAAIHAHALDQ 686
                  566664336677788889999*******88886665544432..23333.46777777766..57***********************9886899******************************************999887888899***************99888999**********************************************************9975.8999***************6555555443221111112333447779*******************************9743333333333322455789**********************9776542222278**************98865 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.24   8.3e+02       3      13 ..     226     236 ..     220     247 .. 0.74
   2 !    8.0   0.1   0.00025      0.85      67     135 ..     364     433 ..     333     443 .. 0.81
   3 !   24.1   0.0   3.2e-09   1.1e-05     144     322 ..     468     684 ..     459     687 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.24
                  EE--B----EE CS
    PF06723.8   3 dlgiDLGtant 13 
                   +g+DLGt+n 
  MMETSP0890-20130614|38760_1 226 AIGMDLGTTNS 236
                  58889999885 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00025
                  -BSSHHHHHHHHHHHHHHH--.---SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH- CS
    PF06723.8  67 viadlevaeellkyfikkvkk.kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAi 135
                   ia +++ +e+ +++ +++    +    +r v++vP   ++  r+  + a+  aG ++v+li+ep aA +
  MMETSP0890-20130614|38760_1 364 KIAAVDISAEIARQVKRDCDLfLSPRYASRCVVGVPARFDQSARENTRTAVLLAGFDDVELIQEPEAAVL 433
                  566677777777777666666334446789***********************************99965 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 3.2e-09
                  ----EEEE-----EEEEEE----.....EEEEEEES----HHHHHHHHHHH....HHHSB----HH........HHHHHHH----S--HHHH....-EEE---BTT--..----EEE----HHHHHHHHHHHHHHHHHHHHHTS-HHHHHH..........HHH---EEE---------HHHHHHH-----E..E-SS...TTTTTT-----TTC-H CS
    PF06723.8 144 psgnmvvdiGggttevavislgg.....ivtsksvrvaGdeldeaiikyir....kkynlliGert........aekikieigsavkeeeee....kmeikGrdlvtg..lpkevevsseevrealkepvsaiveavkevLektppeLaad..........ivdrgivltGGgallkgldkllseetglpvk..vaed...pltcvakGtgkvlekl 322
                  p+  +v d+Gggt +v+v+ l g     i +    +++Gd++d a+ +y+     + +n++i   t        ae+ k e++s ++ + +     +++ +G+    g  l  + +++ ++ ++  +  ++ + +a+ +vLe+++  L ++          i   +++l+GG++ +  + ++l++ tglp +  va+d   p ++va G+++ ++ l
  MMETSP0890-20130614|38760_1 468 PEIMLVFDLGGGTFDVSVVELTGsearlIAIGGDAKLGGDDFDAALAEYLAlrfyEIHNVAIRAPTarlrllteAERCKRELSSKTSVTANArclaRVSKHGTRARGGrcLHLNETLDRATFESICRPILRDLEKAAMSVLEDASTVLYSNdrtsspstkkIKLDAVLLVGGATRMPCVGRMLKKITGLPLEkiVANDalnPDEAVALGAAIHAHAL 684
                  66679**************9988666667778899**************8622335689999875522222222799*****998876666557666777888887763355667788888888888888888888888888887777543232222222277889**********************99743366652226789****98877655 PP

>> PF02782.11  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.5e-07    0.0012     124     193 ..     586     681 ..     564     684 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.5e-07
   PF02782.11 124 rAalegvalqlrailealekd....................sgaplsrlavdGGgsrndllmqllAdilgvpVerp......rtaeatalGaAllA 193
                  rA++e+++  + + le+ + +                    ++ +l+ ++++GG++r + + ++l  i+g+p+e++       ++ea+alGaA+ A
  MMETSP0890-20130614|38760_1 586 RATFESICRPILRDLEKAAMSvledastvlysndrtsspstKKIKLDAVLLVGGATRMPCVGRMLKKITGLPLEKIvandalNPDEAVALGAAIHA 681
                  899999998888888877555777788888888899988877888*************************999975222222579********987 PP

>> PF08910.5  C2 domain of Aida
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05      0.15      59     102 ..      85     129 ..      30     132 .. 0.80
   2 ?   -3.7   0.0       3.7   1.3e+04      42      68 ..     316     342 ..     311     354 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.5e-05
    PF08910.5  59 atcldlrsaalqstqsqeelkledlkkleeilkn.iltynkefpv 102
                  a+ l+lrs+   + +   +l le +k+ e++lk+ i++y + f  
  MMETSP0890-20130614|38760_1  85 AMLLELRSQFQNRHDEASHLILESIKRCEDVLKQeIVSYGQVFAA 129
                  6789*****988888899**************988***9998865 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.7
    PF08910.5  42 qdekeftedqkkligkiatcldlrsaa 68 
                  q++ +     k+++g+ at  ++r  +
  MMETSP0890-20130614|38760_1 316 QHAASVCSRVKRIMGRDATAAEVRRVS 342
                  555566667789999999998888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.96
# Mc/sec: 1809.75
//
Query:       MMETSP0890-20130614|38764_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-32  111.2   0.0      8e-32  110.5   0.0    1.3  1  PF04055.16 Radical SAM superfamily
    0.00066   19.3   0.2     0.0068   16.0   0.2    2.2  1  PF01938.15 TRAM domain


Domain annotation for each model (and alignments):
>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   1.2e-35     8e-32       1     165 [.      61     261 ..      61     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: 110.5 bits;  conditional E-value: 1.2e-35
                  ES-CCEESS--TT-CCCTCHHHHHHHHHHHHHHHHHHHHHHTCS-CEEEEE---SGGGT...................................TTHHHHHHHHHHCHEECCEEEEEE-SSCH...HHHHHHHHHTT..-SEEEEEEESSSHHHHHHCCTCTS-HHHHHHHHHHHHHHSSET...EEEEEEEECTTTCHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
   PF04055.16   1 vvvtrgCnlrCsfCanpetsregrgrsrsveeileevkelkeekgvkevtltGgeplly...................................pdfvellerlaklalpgirialetngtlpd..eeileelaelg..vdrvslglesgdeekvlklmrrghtfeevlealeklreagikr...vvdfivglpgetdeeleellel 165
                  ++++rgC+++CsfC++p+   +gr rsr+ve+il e + l+ee+gv+e+tl+G++ + y                                    +f++ll + a+   pg ri++++++++ d  + +l+++ae     ++++l+++sg+   vl +mrr +t+e++ +++e++r + i+    ++dfi+g++get+e+++ + el
  MMETSP0890-20130614|38764_1  61 ISIQRGCSNMCSFCIVPF--VRGRDRSRPVESILTECRHLYEEQGVREITLLGQNVNSYahygygeeigrrrqystgfeepfvrsfkrdndesaCRFADLLVMVAEA-APGARIRFTSPHPK-DfpDILLDAIAETPnvAKQLHLPAQSGSTS-VLTRMRRAYTIEAYRALVERARTK-IPGvglSSDFITGFCGETEEDHRGTWEL 261
                  689***************..9*******************99999**************888888888888888887776666666666666665566666666665.5*************.66999999999999***************9.************************.*********************9877665 PP

>> PF01938.15  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   9.9e-07    0.0068      19      61 .]     348     395 ..     316     395 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.9e-07
                  ----EE--.--EEE----.......-T..T-EEEEEEEEE-SSEEEEEEE CS
   PF01938.15  19 gegiGrtdngkvvfvpgd.......lpgIGdfveVkItkakrqyLfGell 61 
                  + + Gr+d+++ v+++         +p  Gdf+ V+I+ ++ + LfG+++
  MMETSP0890-20130614|38764_1 348 TYVSGRNDANRSVIFNAElndgqtlKP--GDFALVQIQGTNGHALFGKAV 395
                  446689999*******99*********..******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       285  (0.0208455); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.76
# Mc/sec: 1264.39
//
Query:       MMETSP0890-20130614|38782_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-10   38.0   0.0    7.1e-10   38.0   0.0    1.0  1  PF02383.13 SacI homology domain


Domain annotation for each model (and alignments):
>> PF02383.13  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   5.2e-14   7.1e-10     232     291 ..       2      64 ..       1      68 [] 0.92

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 5.2e-14
                  S---.---..--HHHHHHHHHHHHHHHH-.--EEEEEE-...-------TTT---HHHHHHH.. CS
   PF02383.13 232 lkpkikitrsseasqkafkkHfkkllkrY.gkivvvnLl...ekkgrEkkLseayeelinklnk 291
                  +kp+i ++   +++++a+++Hf +l+ rY  +i+v++L+   ek++rE  +s++y+++i++ln 
  MMETSP0890-20130614|38782_1   2 PKPPIILN-RIDPTYTATRLHFADLFTRYaAPIIVLDLTkqsEKREREMIVSNEYRQAIEHLNV 64 
                  68898888.9******************************99999****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.42s 00:00:00.75 Elapsed: 00:00:00.82
# Mc/sec: 198.72
//
Query:       MMETSP0890-20130614|38783_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-60  203.1   0.0    7.5e-60  203.0   0.0    1.0  1  PF00995.18 Sec1 family


Domain annotation for each model (and alignments):
>> PF00995.18  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.0   5.5e-64   7.5e-60     100     564 .]      12     475 ..       1     475 [. 0.86

  Alignments for each domain:
  == domain 1    score: 203.0 bits;  conditional E-value: 5.5e-64
                  EEE----SEEECTTEEEE--TTHHHHHHSTCHHHHHHHHHHHHHHHHHHHTT-.....----EE--S.GGGHHHH.HHHHHHHHHHSSSS-----....-----SEEEEEEE----SSTTTS---BHHHHHHHHS-EGGGEEE-----....---EEE-STTSSHCCCCTTSBCHHHTTTS-S-STTTTT--.-.......--..-----TTHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHHT.HHHHHHHHHHCC----------SSSHHHHH.S-HH...HHHHHHHHHH-.-....---HHHHHHHHHHTS-.STTTHCCHGGGG----SSS...........S....T.SS---....-----T......T-SGGTTTT---CHHHHHHHHHTS---.TTTS--S..S-----------------------------EEEEEEE---BHHHHHHHHHHHHTTT.SSEEEB---S-B-HHHHHHHH CS
   PF00995.18 100 vkelyldflpleddlfslelpnsfkrlynadtdeeelqriaqgLfsllltlge.....ipiIrykgnslaerladllarklrenlslfkasndssea..geskqrpvLlIlDRsvDlitpLlhqwtYqalvhdllgiennkvkldeegikgeakkeivLdeeDkfwaelrhlnfadvgeklkkelkelkten.e.......drksnaesiadlkkfveklpelqkekanlslHvniaeelleviekrkldkvselEqdiatgsdkekqkkqailelir.nekvslydklRllllyslte.glkekeleklkrllkqagigkealllvknleklglltakt..a......sr...efaslrdklkllskfaketskrtpkgvsnvlsgykplltrlvedlskgklddsetypyfddkvaqlsgasgslrskrsnaaktsearkrvqrviVFvvGGvTyeEiralqelskrlnknkrvilgstsllnpesfleel 564
                  v + +l++++le++lf+l ++n+++  + +d++   ++r+a gL + +++l       +p Ir++ +s++e++a ll+rkl+e+ +  ++    s a   + ++rpv+++lDR +Dl+t L h  +Yq+l++d+l +e+nk + + +g++     e+  d eD+f+a++ ++ ++dv+e+ +++l++l++ +         d+++++++++ l ++v +lp l ++k++l+ H++i+ ++++++ +r+l +++  E+            ++ + el+  + k +  dklRll +  +   +l+++el+k ++ll++ + ++   +++k+l+++ +l++ +  +      s+   +fa++   l++  + a++ ++++  gv ++l  +  l  r v+dl+  k +  +++  +d++ + +s+++++            ++  +  ++i+F+vGG+ y+E+ alq   + +   + v++g+t+llnpe +l+ l
  MMETSP0890-20130614|38783_1  12 VWDRHLEYIALEPRLFTLGIKNTLEWSFAPDQNALMIERVATGLWCACISLFSasvssMPLIRARPGSASEKVAVLLSRKLSEAAQRKSSLSGGSGAsiVTGTRRPVIILLDRLDDLATALRHTESYQSLADDVLHLERNKCTWEGAGQS----YELCVDGEDEFFARHSQHSLPDVIEASSQDLTALREAEkRvrartggDKSNDENNTTTLADAVGELPALVEKKKRLEAHTSILGAIMSRVVSRELPRYFDAEEAR----R-----PE-LFELLGpQAKGTVRDKLRLLFVKGIERgTLSDEELTKCETLLRECHGPELSQSAFKALRDARSLHSVStsKalqddvSTtgvTFAKM---LSKAHAGATKLVDKAAAGVHSLLVAKSALASRAVDDLMDLKGKTHDDFILLDPLATSWSSQQQQTH----------QVITQHADAICFMVGGGCYAEYHALQIALANSP--RTVVYGTTELLNPEALLNTL 475
                  67889*******************999999*****************99987777777*************************99777777777777789999*****************************************765433....5788999****************************66534789***98899999************************************************988....2.....33.78888778889999************669****************888889999999999999999764414444442223334444...33335667778888999********************88888889********9944333333222..........34455669******************7777745..9**************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       392  (0.0286717); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:01.14
# Mc/sec: 998.13
//
Query:       MMETSP0890-20130614|38787_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   72.8   0.0    3.7e-20   72.0   0.0    1.4  1  PF00069.20 Protein kinase domain
    2.8e-06   26.5   0.0    4.8e-06   25.7   0.0    1.4  1  PF07714.12 Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   5.4e-24   3.7e-20      70     247 ..       8     195 ..       2     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 5.4e-24
                  STEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE..TT--E.....EE------EEE.....CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHH.....HHHHHHHHHHT-SSGGG CS
   PF00069.20  70 kdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLld..kkgel.....kiaDFGlakkl.....eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepksssks.....eelkdlikkllekdpak 247
                  k   ylv+e + +      +++ +k+s  +i++i + ++++le lHsng ++ D+KpeNi++   +         +++DFGla  +       ++e     vgt +++  E   ++ + +++ D  +lG +l +l+++ ++  ++ e+d+ +li+k+++   +++    +s       e l+++++ + ++ +++
  MMETSP0890-20130614|38787_1   8 KGWRYLVMERLGH-----QISECEKYSVAQICSIGYDMVCALEILHSNGYVYADMKPENIMIGgiNA--SslyeaRLIDFGLATRFraamtGLQREGSAFHVGTARFRGVESHANRLQPSRQNDCEALGHVLLSLANNGVLPWDRVETDEIKLIAKKQQLLQPQNTVAACSAIpdalhEPLTHFLTICRNTSHQE 195
                  5556777777755.....4567899*************************************94333..256999**********9**9987788888899*************9*********************97755555559999999999888665555554444335556666666666666666555 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     7e-10   4.8e-06      98     233 ..      26     169 ..      11     206 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7e-10
                  TGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEET.....TTEEEE-----CEESTTTSCEEESTT-E...ECGGGS-HHHHHHSE.EEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHH CS
   PF07714.12  98 ekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLlee.....ekvvkisDfGLardiekddyykkkeeak...lpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpee 233
                  ek ++++++++ +++  ++e L+s+ +v  d+   N+++           ++ DfGLa +     +  ++e++       ++  +Es  ++   + + D  + G +l  ++++g  p+ ++++ e ++l+ ++++l +p+++ + 
  MMETSP0890-20130614|38787_1  26 EKYSVAQICSIGYDMVCALEILHSNGYVYADMKPENIMIGGinassLYEARLIDFGLATRFRAAMTGLQREGSAfhvGTARFRGVESHANRLqPSRQNDCEALGHVLLSLANNGVLPWDRVETDE-IKLIAKKQQLLQPQNTVAA 169
                  788999*********************************86555534589**********96666665555555133567999***9888764899*************************9999.7788888888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       787  (0.0575629); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:01.08
# Mc/sec: 730.00
//
Query:       MMETSP0890-20130614|38822_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-09   37.0   1.2      3e-05   23.6   0.0    4.9  6  PF01436.16 NHL repeat
    2.5e-05   23.6   0.1      0.076   12.2   0.0    3.0  4  PF08450.7  SMP-30/Gluconolaconase/LRE-like region
  ------ inclusion threshold ------
      0.083   12.8   0.6        8.6    6.6   0.0    3.6  3  PF07494.6  Two component regulator propeller


Domain annotation for each model (and alignments):
>> PF01436.16  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.51   2.3e+03       9      27 ..      34      52 ..      31      53 .. 0.66
   2 ?   -2.1   0.0      0.89     4e+03      15      25 ..      82      92 ..      79      95 .. 0.81
   3 ?   -2.3   0.0       1.1     5e+03       5      16 ..     115     126 ..     113     127 .. 0.82
   4 !    6.4   0.0    0.0019       8.5       6      23 ..     174     192 ..     169     193 .. 0.86
   5 !   23.6   0.0   6.7e-09     3e-05       5      28 .]     227     250 ..     223     250 .. 0.91
   6 ?    1.1   0.0     0.085   3.9e+02       1      18 [.     302     320 ..     302     320 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.51
                 E-TT--EEEEEGCCTEEEE CS
   PF01436.16  9 vdsdGdvyVaDsenhrvqv 27
                 vd +Gdv+  ++  hr+++
  MMETSP0890-20130614|38822_1 34 VDENGDVFFIERLSHRIRK 52
                 7778887755555566665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.89
                 EEEEEGCCTEE CS
   PF01436.16 15 vyVaDsenhrv 25
                 +++aD+  +++
  MMETSP0890-20130614|38822_1 82 ILIADRDSRKI 92
                 899**998877 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.1
                  EEEEE-TT--EE CS
   PF01436.16   5 hGvavdsdGdvy 16 
                   Gv++  d+++y
  MMETSP0890-20130614|38822_1 115 CGVCLGIDNTIY 126
                  599999999998 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0019
                  EEEE-.TT--EEEEEGCCT CS
   PF01436.16   6 Gvavd.sdGdvyVaDsenh 23 
                  ++ vd ++G+++ aD ++ 
  MMETSP0890-20130614|38822_1 174 DIKVDpTNGTLLLADGNRL 192
                  789************8875 PP

  == domain 5    score: 23.6 bits;  conditional E-value: 6.7e-09
                  EEEEE-TT--EEEEEGCCTEEEEE CS
   PF01436.16   5 hGvavdsdGdvyVaDsenhrvqvf 28 
                   G+a+dsdG++y +D++n+r++++
  MMETSP0890-20130614|38822_1 227 RGIALDSDGTIYLCDFGNSRIRIL 250
                  69*******************975 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.085
                  -SSBEEEEE-.TT--EEEE CS
   PF01436.16   1 lnnPhGvavd.sdGdvyVa 18 
                  l +P  +++d + G +yV+
  MMETSP0890-20130614|38822_1 302 LFCPVAITIDeDRGCLYVG 320
                  689*******999999985 PP

>> PF08450.7  SMP-30/Gluconolaconase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.46   2.1e+03      11      24 ..      10      23 ..       6      28 .. 0.77
   2 !   12.2   0.0   1.7e-05     0.076     123     202 ..      57     130 ..      44     145 .. 0.87
   3 !    7.7   0.0    0.0004       1.8     134     209 ..     178     249 ..     169     258 .. 0.75
   4 ?   -3.6   0.0       1.1   5.2e+03     193     202 ..     312     322 ..     303     336 .. 0.57

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.46
    PF08450.7 11 egaLywvDilgqrl 24
                 +++L wvDi+ ++ 
  MMETSP0890-20130614|38822_1 10 KKELGWVDIVSRKK 23
                 7899*****98875 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.7e-05
    PF08450.7 123 dgklervlddltisNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvfidlkkgegepDGlavDaeGnvwvAvw 202
                  dg ++ + ++ +++ G ++ ++++++ +aD   rki +fd++  +g   +r+v+++++ g+ +p G+++  ++ +++ + 
  MMETSP0890-20130614|38822_1  57 DGNCNILDEEYKFPSGGCIEKNKSKILIADRDSRKIISFDLK--SG---RRQVITQFSVGK-RPCGVCLGIDNTIYAVIT 130
                  47899999*********************************4..33...588889999998.799***999999998776 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0004
    PF08450.7 134 tisNGiawspdgktlYlaDsltrkiwafdvdaeggelsnrrvfidlkkgegepDGlavDaeGnvwvAvwgggkvvr 209
                    +NG  + +dg+ l   D  t+ +  +  d++ g ++     + +++      G+a+D++G ++ + +g+++++ 
  MMETSP0890-20130614|38822_1 178 DPTNGTLLLADGNRLRRFDPITKLVSTIAGDTTIGVIDGIYSQALFHTI----RGIALDSDGTIYLCDFGNSRIRI 249
                  5677777777777777777777777777777777766655544444444....49*****************9975 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 1.1
    PF08450.7 193 a.eGnvwvAvw 202
                  +  G+++v + 
  MMETSP0890-20130614|38822_1 312 EdRGCLYVGTA 322
                  33333333332 PP

>> PF07494.6  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   5.6e+03       3      14 ..     121     132 ..     120     135 .. 0.73
   2 ?    6.6   0.0    0.0019       8.6       6      22 ..     225     241 ..     223     243 .. 0.86
   3 ?    2.1   0.0     0.057   2.6e+02      10      23 ..     308     322 ..     304     323 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.2
    PF07494.6   3 psnnvtaileDs 14 
                  ++n+++a+  D 
  MMETSP0890-20130614|38822_1 121 IDNTIYAVITDD 132
                  589999777754 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0019
    PF07494.6   6 nvtaileDsdGrlWvGt 22 
                  +++ i+ DsdG+++++ 
  MMETSP0890-20130614|38822_1 225 TIRGIALDSDGTIYLCD 241
                  5889**********985 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.057
    PF07494.6  10 ileDsdG.rlWvGte 23 
                  i  D d   l+vGt 
  MMETSP0890-20130614|38822_1 308 ITIDEDRgCLYVGTA 322
                  55555655*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      352  (0.0257461); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.37s 00:00:01.08 Elapsed: 00:00:00.96
# Mc/sec: 1018.45
//
Query:       MMETSP0890-20130614|38825_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       436  (0.03189); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.37s 00:00:01.06 Elapsed: 00:00:00.61
# Mc/sec: 1551.74
//
Query:       MMETSP0890-20130614|38835_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   53.9   0.0    1.3e-14   53.8   0.0    1.0  1  PF00378.15 Enoyl-CoA hydratase/isomerase family
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.021   14.8   0.0    1.2  1  PF01713.16 Smr domain


Domain annotation for each model (and alignments):
>> PF00378.15  Enoyl-CoA hydratase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.8e-18   1.3e-14       8      97 ..      18     109 ..      11     110 .] 0.95

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.8e-18
                  -EEEEE-----S----HHHHHHHHHHHHHHHH-TT----EEE----SSB----HHHCHHH..-CHHHH---HHHHHHHHHHHT-SS--EEEE CS
   PF00378.15   8 vavikldrpekvNalsaelleelkealekleadksikaivlsggekaFsaGaDikelaae..teaeqaqlseeaqklvekledlekpvvAav 97 
                    vi++++p+k Na ++++l++l  a++k+ +++ +k+++++g  k+++aG D+ + +++  + a  + l e   +l++   d +kp++Aa+
  MMETSP0890-20130614|38835_1  18 ATVIRMNNPQKYNAWTRTMLKDLHGAMKKASENEATKVLIVTGTGKYYCAGVDLAGTLKPmwPGALRKRLYEMNIELFDIWLDFPKPIIAAM 109
                  579*********************************************************9999999999999999***************8 PP

>> PF01713.16  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.1e-06     0.021      13      55 ..      38      85 ..      33      95 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHHHHH-EEEEE----....---.....HHHHHHHHHHT CS
   PF01713.16 13 ealeefldrarskglrtvliitGkGshseggv.....LkkavkewLde 55
                 + l+ ++++a ++++++vli+tG G+    gv     Lk+  +  L++
  MMETSP0890-20130614|38835_1 38 KDLHGAMKKASENEATKVLIVTGTGKYYCAGVdlagtLKPMWPGALRK 85
                 5688999******************77777766666677777777744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       353  (0.0258192); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.55
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|38836_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       197  (0.014409); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.37s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 433.31
//
Query:       MMETSP0890-20130614|38829_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-64  215.7   0.1    9.7e-64  215.2   0.1    1.2  1  PF00266.14 Aminotransferase class-V
  ------ inclusion threshold ------
       0.15   10.9   2.8       0.29   10.0   1.9    1.5  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.1   1.4e-67   9.7e-64       1     370 [.      47     416 ..      47     417 .. 0.89

  Alignments for each domain:
  == domain 1    score: 215.2 bits;  conditional E-value: 1.4e-67
                  -B--TTTS----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT-S-GGGEE---------HHHHHH---------EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH--.TTEEEEEEESB-S----B--HHHHHHHHHH-..--EEEEE---STTTS---HHHHT-SEEE--------------EEE-HHHHHH----------EEE--S---EE--TTGGG---------------HHHHHHH---HHHHHHHHHHHHHHHHHHTTSTT.....-EEE--.......TT----EEEE-----TTT---HHHH---B-B---TT-.....HHHHHHTT-S.....--EEE---TT--HHHHHH CS
   PF00266.14   1 iyLdsaAttqkpqeVldalqeyytdyngnvhrsvhtlgkeatealeearekvaelinaeseeeiiFtsgttealnlvalslarslkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldelekllt.pktklvaithvsnvtGvvqpveeiaklakea..galvvvDaaqavghipidvkklgvDflafSgHKllgPtGiGvlyvrrellekleplklggemveevsleettfaeapskfeaGTpniagiiglgaaleyleeigleaiekhekelaeylyerLsalpg.....vellgpak....aerrasivsfafkgveaedvatlLdergIavrsGhhca.....qplmkrlale.....gtlRaSlyiynteeevdr 370
                  iyLd aAt ++ +eV +a+ +y+++y gn+ +s h +g +a++ + +ar ++a+l+ a+  +eiiF+s+++e  n ++ ++    +++ ++++t+ eh+a l +  +l+    a++ +i  d+ g++ ++++++++   kt++v+++ ++n++G +q+++ i++l+k++  ++lv++Daaqa+g+ip++v++lgvD+l++ gHK+ +P+G  vly+r+  + +l +++ gg+       +e          +aGT+ ++ i+++g+a+++ ++ g++ i++h+++++++l +rL++l +     ++++gp      + + ++++s+a+ g+ a+ +   L+e   a ++  +c       p++k + l+     gt+R S+++++t++e+d+
  MMETSP0890-20130614|38829_1  47 IYLDYAATCPIYPEVTKAMIPYLQRYWGNP-SSGHVYGVKAANGVARARLEIAKLLDADI-SEIIFCSCGSEVDNWAITGAL--QNERNHVITTAIEHPAILACTDHLQAIGIANISIIGCDDLGRVSPQTIADAVIpGKTAIVSVMLANNEIGAIQDITTIVRLVKAKdpQILVHTDAAQAIGKIPVNVQNLGVDLLTLVGHKIGAPKGCAVLYIRK--GVNLTKFLHGGG-------QEFN-------RRAGTESVPLIVAMGEAARIWNQEGIQ-IAQHSTRMRDRLAARLRDLLSpsglpLRVNGPLAaglfDAALPNVLSIAVGGISASSILATLRED-LAASAAAACHsdsvaSPVLKAIHLSpsyasGTFRLSVGRHTTQKEIDQ 416
                  8*****************************.99**************************8.***********9999999984..68999********************9999******************97666439****************************96589**********************************************..************.......5555.......89*******************999998.789999888888888877433112223445554411225799********************996.4444444444445559999999999*********************96 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.9   4.3e-05      0.29      63     152 ..     128     226 ..     108     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.3e-05
   PF01041.12  63 gpGdeVIvpsltfvAtanavlqlGakpv....fvDvdpetlnldpaaieaaitprtkaIlpVhly....Gqpadmdairai..aaehglkvieDaAqAlG 152
                  ++ + VI++++   A ++++ +l a  +     +  d +   ++p++i+ a+ p   aI+ V l+    G++ d++ i ++  a++ ++ v  DaAqA+G
  MMETSP0890-20130614|38829_1 128 NERNHVITTAIEHPAILACTDHLQAIGIanisIIGCD-DLGRVSPQTIADAVIPGKTAIVSVMLAnneiGAIQDITTIVRLvkAKDPQILVHTDAAQAIG 226
                  4678889999988888888777766543111145555.8899*******************977433349999*****99933445579999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.38s 00:00:01.14 Elapsed: 00:00:00.81
# Mc/sec: 1316.52
//
Query:       MMETSP0890-20130614|38843_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-40  137.6   0.5    4.4e-40  137.2   0.4    1.2  1  PF00106.20 short chain dehydrogenase
    1.9e-22   80.1   0.3    2.5e-22   79.7   0.2    1.1  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
    7.6e-17   61.4   0.5    1.3e-16   60.6   0.2    1.6  2  PF08659.5  KR domain
    0.00034   20.2   0.4    0.00082   19.0   0.3    1.7  1  PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
    0.00099   18.4   0.0     0.0016   17.8   0.0    1.4  1  PF01370.16 NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.011   14.7   0.1       0.03   13.2   0.1    1.7  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.4   1.9e-43   4.4e-40       1     166 [.      27     196 ..      27     197 .. 0.96

  Alignments for each domain:
  == domain 1    score: 137.2 bits;  conditional E-value: 1.9e-43
                  -EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHHH---EEEEEE--TTSHHHHHHHHHHHHHH----SEEEEE---TT-TTCCSC.HHHHHHHHHHHTHHHHHHHHHHHH.....HH.---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
   PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaelealgaevtvvacDvadrdalaallaeirkalgpldgvvhnagvlddgpleeltperlervlapkvtgawllheltld.....ad.lgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                  +t+++TG+++g+G+a+A  L e+g++++v ++ +  +  a e+++ + a+g ++ +v+ D++++d+++al+++ ++++g ld++v+nag+++dg++ +++p+++++v+++++ g++++++++ +     ++ +g+++++ Sv g++g+pgqa+Yaaak ++ +l+ s ++e+
  MMETSP0890-20130614|38843_1  27 KTAIVTGASRGIGRAIALALGESGCNVVVNYASS--EGPALEVVEMIGAAGGKAIAVKGDMGRQDDIDALFKSTVAEFGGLDILVNNAGITKDGLVMRMKPDQWQSVIDINLSGVFYTSQAAFKimsknKPrGGRIINMGSVVGIFGNPGQANYAAAKGGVAGLTMSNAKEF 196
                  79******************************99..89999999*********************************************************************************9876338*********************************9998876 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.2   1.1e-25   2.5e-22       5     242 ..      35     270 ..      33     271 .. 0.89

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 1.1e-25
                  ------HHHHHHHH---EEEE---HH-----------------.-.----TT-SGGHHHHHHHHHHH.---BSEEEEEEE---T..TTS-GGG------HHHHHHHTHHHHHHHHHHGG..GB---....--EEEEEE-------------------THHHHHHHHHH----S---EEEEEE--------------------------------CCC---HHHHHC.SGGGTT----EEE----- CS
    PF13561.1   5 dnsigwaiakalaeaGaevilttwvpaklkkkvqelakelpad.v.vplDvtseedvselaekvkedlggkiDilvhsianspeervekplletsrkgllaalsisayslvsllkaalpknlmneg....gSivalsylaservipgyggmsvaKAaLEsltRvlAvelgrkkgiRvntisaGplktraakaiggiekmieyseenapLgkelsaeevaeaaafLl.sdlasaiTgetlyvDgGl 242
                  +++ig aia al e G++v++ +++ +  + +v e+    + + + v  D+ +++d++ l+++  +++ g +Dilv+ ++++++      ++ ++ ++ ++ ++i+   +  +++aa +  +m ++    g i+ +  +      pg+ ++++aK  +  lt + A+e++  + i vn++  G ++t  + a +  e+m++   +  pLg+  +a+eva  + +L+  + a  iTg+ l++DgG+
  MMETSP0890-20130614|38843_1  35 SRGIGRAIALALGESGCNVVVNYASSEGPALEVVEMIGAAGGKaIaVKGDMGRQDDIDALFKSTVAEF-GGLDILVNNAGITKD----GLVMRMKPDQWQSVIDINLSGVFYTSQAAFK--IMSKNkprgGRIINMGSVVGIFGNPGQANYAAAKGGVAGLTMSNAKEFAS-RAITVNCVCPGFINTE-MVANELSEDMMAKVTQAIPLGRLGEATEVAGLVKYLAlDPSAAYITGHSLTIDGGI 270
                  48***********************9988777777777776553469********************9.**************9....678899***********************99..7766666779999999998888889999*********************9.**************55.55667789**************88************62678899***********6 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.2   5.7e-20   1.3e-16       2     156 ..      28     185 ..      27     207 .. 0.89
   2 ?   -3.9   0.0       3.5     8e+03     101     119 ..     216     234 ..     211     246 .. 0.60

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 5.7e-20
                  -EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EEEEE--TTSHHHHHHHH----TTS.---EEEE---------TTT--HHHHHHHHHHHHHHHHHHHHHHCC......----EEEEEEEGGGT-------------HHH CS
    PF08659.5   2 tyLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevtvvaaDvadrdavealleeveaeepplrGvvhaAgvlrdallaemtaedlaavlapKvtGawnLhellad......epldffvlfSSiagvlgsagqanyaaanafl 156
                  t +vtG+  g+G+++a  L e+g + +v  + s  + ++ e  ++ + a g +  +v+ D+  +d++ al+++  ae++ l+  v+ Ag+++d+l+ +m+++++++v+   ++G+    ++  +       +   ++ + S+ g++g++gqanyaaa+  +
  MMETSP0890-20130614|38843_1  28 TAIVTGASRGIGRAIALALGESGCNVVVNYASS--EGPALE-VVEMIGAAGGKAIAVKGDMGRQDDIDALFKSTVAEFGGLDILVNNAGITKDGLVMRMKPDQWQSVIDINLSGVFYTSQAAFKimsknkPRGGRIINMGSVVGIFGNPGQANYAAAKGGV 185
                  679*********************999999888..555555.899**********************************************************************9999988777777665667899********************8755 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.5
                  -HHHHHHHHHHHHHHHHHH CS
    PF08659.5 101 taedlaavlapKvtGawnL 119
                   a++l++ + +Kvt a  L
  MMETSP0890-20130614|38843_1 216 VANELSEDMMAKVTQAIPL 234
                  4555555556666555544 PP

>> PF12242.3  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   3.6e-07   0.00082      35      72 ..      22      57 ..      12      63 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.6e-07
    PF12242.3 35 kidGpkkvLviGaSsGyGlAsrialafgagadtigVsf 72
                 +++G k++ v+GaS G+G A  iala g     + V +
  MMETSP0890-20130614|38843_1 22 SAEGGKTAIVTGASRGIGRA--IALALGESGCNVVVNY 57
                 56899***************..9999966665555655 PP

>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.9e-07    0.0016       2     123 ..      30     173 ..      29     243 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.9e-07
                  EEE--------HHHHHHHHH-TEEE.EESSCSTCCCCCCHHH......TBEEEB--TT-HHHHHHHHHHH.....T.SEEEE--S---...HHHCC.CSHHHHHHHHT---HHHHHHHH....HHTT...EEEEEEE.GGG---B CS
   PF01370.16   2 lVtGatGfiGsalveallekgyevv.nlirrtrseslatvri......rvelveldltdkdalerlfaee.....qpdaVihlAaesg...vdass.edpadfieanvegtlnlleaar....kagv..krflfasS.sevygkd 123
                  +VtGa+  iG+a++ al e+g +vv n++ +   + +  +        ++  v++d+ ++d++++lf+++       d  ++ A+ +    v++   ++ + +i++n+ g+    +aa+    k++    r+++++S + ++g++
  MMETSP0890-20130614|38843_1  30 IVTGASRGIGRAIALALGESGCNVVvNYASSEGPALEVVE-MigaaggKAIAVKGDMGRQDDIDALFKSTvaefgGLDILVNNAGITKdglVMRMKpDQWQSVIDINLSGVFYTSQAAFkimsKNKPrgGRIINMGSvVGIFGNP 173
                  8**********************65455555555533333.3699***999******************9998899999999999876556677666777788888888777777766644433333667888888888888877 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05      0.03      35      97 ..      25      85 ..      11      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
                 -S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-ST---HHHHSSEEEE-------B-GGG CS
   PF02882.14 35 egkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeilreaDivvvavGkpelvkaem 97
                  gk+++v G+s+ +g+++al L e+++ V v   +++     l+  +++ +a Gk+  vk++m
  MMETSP0890-20130614|38843_1 25 GGKTAIVTGASRGIGRAIALALGESGCNVVVNYASSEGP--ALEVVEMIGAAGGKAIAVKGDM 85
                 489**********************99998876666443..3455677778888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       273  (0.0199678); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.56
# Mc/sec: 1160.34
//
Query:       MMETSP0890-20130614|38850_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   13.9   0.2      0.083   13.2   0.2    1.4  1  PF08867.6 FRG domain


Domain annotation for each model (and alignments):
>> PF08867.6  FRG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   6.1e-06     0.083      42      96 ..     133     188 ..      83     195 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.1e-06
    PF08867.6  42 efkkeakseleksnenenelellalaQHhglpTrLlDwt...tnplvAlfFAvekeae 96 
                  +++++++s l++s+++  + + l   QH   pT+L+      +n   AlfFA +++a+
  MMETSP0890-20130614|38850_1 133 TYLSSRRSSLQQSSST--NDNTLLRRQHSRSPTPLVNAAileQNLANALFFAHQRSAT 188
                  4555566666666666..78999**************86444899*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       310  (0.0226741); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 741.89
//
Query:       MMETSP0890-20130614|38849_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   14.1   2.9      0.015   13.8   2.0    1.0  1  PF14033.1  Protein of unknown function (DUF4246)
       0.12   11.0   0.3       0.14   10.8   0.2    1.1  1  PF06286.6  Coleoptericin
       0.21   11.3   3.8       0.56    9.9   0.2    2.5  3  PF01724.11 Domain of unknown function DUF29


Domain annotation for each model (and alignments):
>> PF14033.1  Protein of unknown function (DUF4246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.0   3.3e-06     0.015     239     344 ..      11     125 ..       7     137 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.3e-06
    PF14033.1 239 plwnetLsrlkksseepaRietkeveyeeeee..........kepeeekeeeeeaeeeeekeerleeeee......kwkeekrkailpepkefspeeeeeeeeeekevkLqkefrekgLqvI 344
                  p w e Ls+l+++s++p+Ri+++e   +e+ e          +       +  ++ eee++++ ++++ +      ++   + +  ++ p+  +++ + +++e + + +++k+ ++k++q I
  MMETSP0890-20130614|38849_1  11 PEWREALSELSEVSDKPQRIQYEERYEDEKFEeaynfeeldnP-------SFLSDVEEEDDDDAYDKDVSllaseeDYPAARFEFAEQVPQIVEETFHISTPELPMKSTIHKDRQDKQMQTI 125
                  89********************997666666678866544331.......323333333333333322223333445555666666666655555555666666666777777777777766 PP

>> PF06286.6  Coleoptericin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.1e-05      0.14      19      92 ..      31     103 ..      27     126 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.1e-05
    PF06286.6  19 eeeerykrslqpeaanvnnndqewqvsPailrddsgntktdinvqrhgenndfeagwskvv.repekakptwyig 92 
                  + eery   ++ ea n+++ d++ ++s  + +dd++    d+     + ++d+ a+  + + + p++ + t++i 
  MMETSP0890-20130614|38849_1  31 QYEERYEDEKFEEAYNFEELDNPSFLSDVEEEDDDDAYDKDV--SLLASEEDYPAARFEFAeQVPQIVEETFHIS 103
                  569*****************************9999655555..5556667777765555515588888888884 PP

>> PF01724.11  Domain of unknown function DUF29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.23     1e+03     116     128 ..      26      46 ..       5      56 .. 0.45
   2 ?    1.7   0.0      0.04   1.8e+02      87     127 ..      51      92 ..      48     102 .. 0.72
   3 ?    9.9   0.2   0.00012      0.56      63      95 ..     114     146 ..     107     148 .] 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.23
   PF01724.11 116 lsd........sefpeecpfs 128
                   ++        ++ + e+ ++
  MMETSP0890-20130614|38849_1  26 KPQriqyeeryEDEKFEEAYN 46 
                  332222222223333334444 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.04
   PF01724.11  87 dspslknyleee.lekayekArklaaketklsdsefpeecpf 127
                  d+ps  + +eee  ++ay+k ++l+a e + + ++f+ ++ +
  MMETSP0890-20130614|38849_1  51 DNPSFLSDVEEEdDDDAYDKDVSLLASEEDYPAARFEFAEQV 92 
                  789999999999677999999999999998888555544433 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00012
   PF01724.11  63 perrsrsWeasIreqrkeiekllkdspslknyl 95 
                  +++r+++  ++I+e+r +i+ + ++sp+lkn++
  MMETSP0890-20130614|38849_1 114 HKDRQDKQMQTIKEARFHIATQTDKSPNLKNKI 146
                  4678888999*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       565  (0.0413253); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.38s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 472.88
//
Query:       MMETSP0890-20130614|38856_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    9.1   4.8         15    5.9   3.4    2.2  1  PF07546.8 EMI domain


Domain annotation for each model (and alignments):
>> PF07546.8  EMI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.4    0.0011        15      18      59 ..     112     149 ..      21     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0011
    PF07546.8  18 engveavvqrvlqgCrwggrtCpsyrtlyrpsYrvayklvtr 59 
                  ++g  +   r l++Cr+ +     yr  yrp++r++   +t+
  MMETSP0890-20130614|38856_1 112 SQGQPNITIRCLSPCRQAA----LYRHGYRPVFRRVATSKTD 149
                  4445555556666665555....9***********9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       355  (0.0259655); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.83
# Mc/sec: 565.89
//
Query:       MMETSP0890-20130614|38863_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       206  (0.0150673); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 187.82
//
Query:       MMETSP0890-20130614|38872_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-21   74.7   0.0    4.9e-21   74.0   0.0    1.4  1  PF01502.13 Phosphoribosyl-AMP cyclohydrolase


Domain annotation for each model (and alignments):
>> PF01502.13  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   3.6e-25   4.9e-21       2      75 .]      48     128 ..      47     128 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 3.6e-25
                  EEEE-HHHHHHHHH----EEE-S----EEE--------EEEEEEEE-----EEEEEEEE---.----......---SS--E CS
   PF01502.13   2 laymneealektletgkatyySrsrqelwkkGetSgnvqkvkeirlDCDqDalllkveqkga.aCHt......grrsCFyr 75 
                  lay+ne al+++le +  + +S sr +lw kG+tSg+++++k++ ++C+q++ll+ v++  + aCHt       r+sC+yr
  MMETSP0890-20130614|38872_1  48 LAYANELALQTALERRLCVLWSSSRGALWIKGDTSGDYLELKNVFVNCEQNSLLYLVKPVRSgACHTrdefgrTRKSCYYR 128
                  89*********************************************************88879***999987799**996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.39s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 703.19
//
Query:       MMETSP0890-20130614|38877_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.77
# Mc/sec: 280.09
//
Query:       MMETSP0890-20130614|38874_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   20.2  18.6    0.00037   20.2  12.9    9.3  9  PF12718.2 Tropomyosin like
      0.006   16.1   2.4      0.006   16.1   1.7   10.1  9  PF08286.6 Spc24 subunit of Ndc80
  ------ inclusion threshold ------
        6.5    5.7  33.9        1.9    7.4   1.0    4.9  4  PF04582.7 Reovirus sigma C capsid protein


Domain annotation for each model (and alignments):
>> PF12718.2  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   9.3    0.0019       8.6      41     112 ..       6      81 ..       2     103 .. 0.67
   2 ?   -4.8  20.7         3   1.4e+04      14     124 ..     112     240 ..     108     242 .. 0.81
   3 ?   -4.5  15.1         3   1.4e+04      42     107 ..     196     262 ..     167     264 .. 0.57
   4 ?    2.5  15.8     0.023   1.1e+02       3     102 ..     220     324 ..     218     332 .. 0.84
   5 ?   -4.8  15.2         3   1.4e+04      43     135 ..     370     446 ..     328     451 .. 0.41
   6 ?    3.3   6.8     0.013        60      20      71 ..     418     468 ..     398     482 .. 0.56
   7 ?    3.5   0.1     0.011        50       2      32 ..     458     488 ..     457     492 .. 0.85
   8 !   20.2  12.9   8.1e-08   0.00037      14     114 ..     494     594 ..     487     599 .. 0.90
   9 ?    2.3   4.4     0.026   1.2e+02      17      65 ..     606     654 ..     594     661 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0019
    PF12718.2  41 qkKnqqlEeevekleeq...lkeakekleekekkkteaealtrriqlLEee.leesekrLketteklreadkkaee 112
                  ++Kn +lE++ve +++q   +   k +lee++  ++e e+l+++i lLE e l e  ++ k ++++   ++ +   
  MMETSP0890-20130614|38874_1   6 KQKNLSLESQVEAIRTQdqiVARDKIALEENDALRAECEELKKKIVLLESEkLREMTATKKAANDRFMALEAERKR 81 
                  78**********9988744456778899*********************762555554445555544433333333 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 3
    PF12718.2  14 ekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae..................altrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEeer 124
                  e++e++ ++++ele+e  +k ++i+s  +  +++E+ + k+e++l e+k++l+e   +++e                    + t  +++++ e e+ +++L++ ++ l+ ++kk e+  ++ + LEee 
  MMETSP0890-20130614|38874_1 112 ERLEAADARYQELEAEIYSKHDNIESERRCREEAEQRLSKVEAELIETKQNLQERPLESAETMtmreqrdkairesrtanmTATTALSTMQREYERLSEKLEQEMNALARMKKKHEQALQRQQELEEEL 240
                  789999999999999999999999999999999999999999999999999987643333332334477889999999976667778899999999999999999999999999999999999999886 PP

  == domain 3    score: -4.5 bits;  conditional E-value: 3
    PF12718.2  42 kKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeele...esekrL.ketteklread 107
                  + +++++ e e+l e+l++  ++l   +kk+++  al+ r q LEeele   ++e++L ++t+e+ +e++
  MMETSP0890-20130614|38874_1 196 TALSTMQREYERLSEKLEQEMNALARMKKKHEQ--ALQ-RQQELEEELEairKNETSLrAQTNENTTETE 262
                  334556666666666666655555544433322..455.5689999999444466667557777777776 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.023
    PF12718.2   3 nalklEaenaqekaeeleekl...Keleqe.nekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteae.altrriqlLEeeleesekrLkettek 102
                    +k   e+a+++ +elee+l   ++ e++  ++ +e+ ++ + K++ lE+++e ++++ ++a+++ ++ +k ++ +e + + ri  L  e ++  k+L+e  ++
  MMETSP0890-20130614|38874_1 220 ARMKKKHEQALQRQQELEEELeaiRKNETSlRAQTNENTTETEAKVRFLEDQLEAIRASEEKARAQCDACAKCAEINEaNAQERIDKLVAERDQVRKELTEIATS 324
                  67999************998733234444314567788999*************************************99*******************886544 PP

  == domain 5    score: -4.8 bits;  conditional E-value: 3
    PF12718.2  43 KnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeeseRkvkaLEeerdeweekleele 135
                   ++q + e+e+l+ + +ea++  e                   E  l+e ++++  +   l+ ++  ae +e + ++LE+e ++  +++ ele
  MMETSP0890-20130614|38874_1 370 SLSQRQAELEHLQREAREANARSE----------------GRFESTLKERDSSVLRAEAALARITASAESLETEKEQLEKEIEALKTRCHELE 446
                  444444444444444444433332................22333333333333333333333333333333333333333333333333333 PP

  == domain 6    score: 3.3 bits;  conditional E-value: 0.013
    PF12718.2  20 eeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekk 71 
                   ++   le+e+e+ E+ei++L++++++lE + ek+ ++ +e ++ + e + +
  MMETSP0890-20130614|38874_1 418 TASAESLETEKEQLEKEIEALKTRCHELERQ-EKIGASSEELRAMVAERDAA 468
                  2334457777777777777777777777765.55555555555554444444 PP

  == domain 7    score: 3.5 bits;  conditional E-value: 0.011
    PF12718.2   2 lnalklEaenaqekaeeleeklKeleqenek 32 
                  l a+ +E+++a+ +ae++e+++K l ++  +
  MMETSP0890-20130614|38874_1 458 LRAMVAERDAAVYRAETAEADYKLLLKQTSS 488
                  678999*****************88776655 PP

  == domain 8    score: 20.2 bits;  conditional E-value: 8.1e-08
    PF12718.2  14 ekaeeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekleekekkkteaealtrriqlLEeeleesekrLketteklreadkkaeese 114
                  +  + l+e+l+++e+++++ +++++sL + + + E   e++e++ k   ++++ek++ ++e e+l r +      ++ +e++Lk+ +++l+e++ k +   
  MMETSP0890-20130614|38874_1 494 DNSKVLQERLRDAEERATSLDDQLASLRRNLAEFEYRAETAEADYKALLSSKQEKTQSNAESESLRRALAEANKRADAAEEKLKQRSSRLSELREKVDGRR 594
                  566789*********************************************************99999999999999999999999999999988887655 PP

  == domain 9    score: 2.3 bits;  conditional E-value: 0.026
    PF12718.2  17 eeleeklKeleqenekkEeeiksLqkKnqqlEeevekleeqlkeakekl 65 
                   + +++l+++  + e+  +e ++ + ++ ql  e+++++ +lkea++++
  MMETSP0890-20130614|38874_1 606 AKQNKELRDATRQLEDLQCEHAAAKLQVAQLSAELDEYRHALKEATKQK 654
                  2334455666666666666667777777788888888888888887664 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.3       1.2   5.3e+03      38      38 ..      74      74 ..      17     141 .. 0.59
   2 ?   -2.2   3.9      0.61   2.8e+03      17      45 ..     144     172 ..     114     193 .. 0.47
   3 ?   -8.3  12.5         3   1.4e+04       7      46 ..     204     250 ..     184     307 .. 0.69
   4 ?    0.8   1.5     0.075   3.4e+02      16      46 ..     298     334 ..     290     355 .. 0.71
   5 !    4.7   1.4    0.0045        20      10      64 ..     359     410 ..     348     412 .. 0.76
   6 !   16.1   1.7   1.3e-06     0.006       4      63 ..     410     471 ..     407     473 .. 0.81
   7 !    4.1   2.5     0.007        32       5      46 ..     493     542 ..     490     559 .. 0.73
   8 ?   -0.5   3.0      0.19   8.6e+02      13      50 ..     546     591 ..     539     606 .. 0.57
   9 !    4.2   0.9    0.0065        30      13      53 ..     610     654 ..     604     664 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
    PF08286.6 38 e 38
                  
  MMETSP0890-20130614|38874_1 74 A 74
                 0 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.61
    PF08286.6  17 dleselenlqseleelkeeleeleeqene 45 
                  + e++l+++++el e+k++l+e   ++ e
  MMETSP0890-20130614|38874_1 144 EAEQRLSKVEAELIETKQNLQERPLESAE 172
                  22333333333333333333333322222 PP

  == domain 3    score: -8.3 bits;  conditional E-value: 3
    PF08286.6   7 ekvrlakelndleselenlqseleelkeeleeleeqene.......g 46 
                  e  rl ++l++  ++l +++++ e+  ++ +elee+++         
  MMETSP0890-20130614|38874_1 204 EYERLSEKLEQEMNALARMKKKHEQALQRQQELEEELEAirknetsL 250
                  44455555666666666666666666666666666655544333332 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.075
    PF08286.6  16 ndleselenlqseleelkeeleeleeqene......g 46 
                  ++ ++++ +l +e ++ ++el+e+ +++n+       
  MMETSP0890-20130614|38874_1 298 ANAQERIDKLVAERDQVRKELTEIATSKNNkssiliR 334
                  4567789999999999999999999999986555441 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0045
    PF08286.6  10 rlakelndleselenlqseleelkeeleeleeqenegkeedeeeaeeedsnilkl 64 
                  r++ + ++l ++l++ q+ele l++e  e + +++      e++ +e ds++l++
  MMETSP0890-20130614|38874_1 359 RTIAQRDELAQSLSQRQAELEHLQREAREANARSEG---RFESTLKERDSSVLRA 410
                  566677778888888888888888888887777777...7888889999999986 PP

  == domain 6    score: 16.1 bits;  conditional E-value: 1.3e-06
    PF08286.6   4 ldnekvrlakelndleselenlqseleelkeeleeleeqenegkeedeeea..eeedsnilk 63 
                   +  + r+   +++le+e e+l++e+e lk+++ ele+qe+ g  ++e  a   e d+++++
  MMETSP0890-20130614|38874_1 410 AEAALARITASAESLETEKEQLEKEIEALKTRCHELERQEKIGASSEELRAmvAERDAAVYR 471
                  5777889999*******************************966666666623556666665 PP

  == domain 7    score: 4.1 bits;  conditional E-value: 0.007
    PF08286.6   5 dnekvrlakelndleselenlqseleelkeeleeleeqene........g 46 
                  d++   l++ l+d e++ ++l ++l++l+++l e e + ++         
  MMETSP0890-20130614|38874_1 493 DDNSKVLQERLRDAEERATSLDDQLASLRRNLAEFEYRAETaeadykalL 542
                  6666779999************************9998888666666652 PP

  == domain 8    score: -0.5 bits;  conditional E-value: 0.19
    PF08286.6  13 kelndleselenlqseleelkeeleeleeqene........gkeed 50 
                  +e ++ ++e e+l++ l+e +++ +  ee++++         +++d
  MMETSP0890-20130614|38874_1 546 QEKTQSNAESESLRRALAEANKRADAAEEKLKQrssrlselREKVD 591
                  4455556666777777777777777777777665555544422232 PP

  == domain 9    score: 4.2 bits;  conditional E-value: 0.0065
    PF08286.6  13 kelndleselenlqseleelkeeleeleeqene....gkeedeee 53 
                  kel+d  ++le lq e +  k ++ +l+ +++e     ke+++++
  MMETSP0890-20130614|38874_1 610 KELRDATRQLEDLQCEHAAAKLQVAQLSAELDEyrhaLKEATKQK 654
                  677777777777777777777777777777777654433333333 PP

>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.0   0.00041       1.9      33     161 ..      68     193 ..      50     202 .. 0.81
   2 ?    2.2   1.6     0.016        75      39     114 ..     191     268 ..     166     313 .. 0.54
   3 ?    6.9   2.8   0.00058       2.7      31     149 ..     331     449 ..     311     463 .. 0.82
   4 ?    2.9   4.6      0.01        46      15     138 ..     481     607 ..     477     644 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00041
    PF04582.7  33 vyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleervkslesgsstgls 161
                    +r++alea  +  + sv s+ ++  +l+ +l+  + s + ++  l+   +  ++l+  + s   ++ +     ++ ++ ls+++ e         nl+      + ++t  e+r k++  + + +++
  MMETSP0890-20130614|38874_1  68 ANDRFMALEAERKRAEGSVYSAQEQCKKLEIELESAVDSNGVLRERLEAADARYQELEAEIYSKHDNIESERRCREEAEQRLSKVEAELIETK---QNLQERPLESAETMTMREQRDKAIRESRTANMT 193
                  579****************************************************************99999999999999999887764433...455555444455555566666666666655555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.016
    PF04582.7  39 aleaata..slsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaal 114
                  ++ a+ta  ++++  + +s+kl +   +l  + +  +++    +el++e++a+++   sl ++ ++ ++ ++a+   l
  MMETSP0890-20130614|38874_1 191 NMTATTAlsTMQREYERLSEKLEQEMNALARMKKKHEQALQRQQELEEELEAIRKNETSLRAQTNENTTETEAKVRFL 268
                  333332211344445555555555555555555555555555556666666666555555555555554444433333 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00058
    PF04582.7  31 tavyerltaleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaal.qssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsanglnitdleerv 149
                    ++er  a+e   a+l+e+ + ++++   + a+ +++++sl++ +ael++l++e ++    s     s+l++  + v   +aal+ +  + +++ t+   l+ ++ a      +le++ 
  MMETSP0890-20130614|38874_1 331 ILIRERDDAIEEREAALRETRQIALERDRTI-AQRDELAQSLSQRQAELEHLQREAREAnARSEGRFESTLKERDSSVLRAEAALARITASAESLETEKEQLEKEIEALKTRCHELERQE 449
                  5689999999999999999887777765555.77899****************999765156888999******999**************************99999998888887653 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.01
    PF04582.7  15 lilsltssvtinpGdltavyerltaleaataslsesvssissklsdlsadlqdv...tsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdisnlksdvsan 138
                  l+l  tss +    +   ++erl + e  + sl++ ++s+  +l++ +   +      ++l   k e ++ ++e ++l+ ++++         e  +++++ ls+l+++vd+   +     + v+a+
  MMETSP0890-20130614|38874_1 481 LLLKQTSSKSSYDDNSKVLQERLRDAEERATSLDDQLASLRRNLAEFEYRAETAeadYKALLSSKQEKTQSNAESESLRRALAEANKRADAAEEKLKQRSSRLSELREKVDGRRKETDSDAALVAAK 607
                  6677777777666666677899999999999999999999999998876544331114566666777777777888888888888888877888888889999999999999877665555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2923  (0.213795); expected 273.4 (0.02)
Passed bias filter:                      454  (0.0332066); expected 273.4 (0.02)
Passed Vit filter:                       167  (0.0122147); expected 13.7 (0.001)
Passed Fwd filter:                        82  (0.00599766); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 6.21u 0.37s 00:00:06.58 Elapsed: 00:00:03.73
# Mc/sec: 433.66
//
Query:       MMETSP0890-20130614|38879_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-17   61.1   0.2    9.6e-17   60.9   0.2    1.1  1  PF03928.9 Domain of unknown function (DUF336)


Domain annotation for each model (and alignments):
>> PF03928.9  Domain of unknown function (DUF336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.2     7e-21   9.6e-17      12     132 .]       2     121 ..       1     121 [. 0.89

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 7e-21
    PF03928.9  12 gaaavaaaeeegvrvtvavvdagGnllaflrmdgaalhsaeiaqrKaytaaslgtstselaealqqkpalrkgivaldkglvlfgGGvpikvkg.ev...vGaigVSGgseeeDeelAeagleal 132
                   +aava+a e +v+ ++++vd  G++l  +rm +a + s + a  Ka++aas g+ +  l  +l+q  a+        + ++ ++GG+pi +++ ++   +G+igV  g++++D ++A+a+le++
  MMETSP0890-20130614|38879_1   2 LSAAVAKADEMKVPQCIVIVDVSGEVLGEIRMTNAKFLSLKSALSKARSAASSGKVSNLLPHELRQPLAFATQ-----GAVTGMPGGLPILIEEnGItynLGGIGVGSGTGDDDIQVANAALEII 121
                  689********************************************************99999994444333.....67899********6665665689******99************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       207  (0.0151404); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 420.14
//
Query:       MMETSP0890-20130614|38891_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-07   28.3   0.8    8.9e-05   21.9   0.0    2.1  2  PF00571.23 CBS domain


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.5e-09   8.9e-05      16      51 ..       2      37 ..       1      42 [. 0.94
   2 !    5.3   0.1     0.001        14       1      16 [.      53      68 ..      53      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.5e-09
                 SBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHH CS
   PF00571.23 16 etlsealeilrktgvsrlpVvDedgrlvGiitlrDl 51
                 ++++ea++++ k + ++ +V   dg+lvGi+t++D+
  MMETSP0890-20130614|38891_1  2 ASIAEAADLMVKARTDAGLVEAGDGQLVGILTDSDV 37
                 699*****************9788***********8 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.001
                 HHHHCCSSCCEEETTS CS
   PF00571.23  1 vgdlmtkdvvtvppde 16
                 v+d+mt ++ +v+ +e
  MMETSP0890-20130614|38891_1 53 VKDVMTANPLCVRDTE 68
                 89**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      167  (0.0122147); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.76
# Mc/sec: 220.72
//
Query:       MMETSP0890-20130614|38892_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      176  (0.012873); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.75
# Mc/sec: 546.37
//
Query:       MMETSP0890-20130614|38899_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.41s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 442.40
//
Query:       MMETSP0890-20130614|38895_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   15.2   0.0     0.0096   14.6   0.0    1.3  1  PF03215.10 Rad17 cell cycle checkpoint protein


Domain annotation for each model (and alignments):
>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     7e-07    0.0096     292     428 ..      17     142 ..       6     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7e-07
   PF03215.10 292 fhaiGkvlyakretdddserikkslkeleReellvepeeviemsslsgekfklglfeNyvdfc...veiddavsvvdllSicDilsgdfetreyllrevsttfatrsvlgsnkkevyaprewk..vrklrnsfkvqafavnk 428
                  +haiG++l akr               +e+++l ++pe  i+  ++  e+   ++  N +df+   +  +d     d l ++D++     +  +  r+    +   +   s  +++ a r+ k  ++ +r+++k++ f + k
  MMETSP0890-20130614|38895_1  17 LHAIGRLLRAKR---------------NEQNNLTFDPERLIHRMDMKPETTACFIQYNCIDFFgihSPAEDLWATLDDLAVADLFIARKYST-SHARDTGDPVYPEGYFASITARTVAARNTKpaASAFRPLHKPRLFDLPK 142
                  555555555555...............456679******************************99888999************876554444.79999999999999999999998887776633789********998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 644.02
//
Query:       MMETSP0890-20130614|38901_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-13   49.3   8.5    2.4e-13   49.2   5.9    1.0  1  PF01490.13 Transmembrane amino acid transporter protein
    2.1e-05   23.4   5.0    2.5e-05   23.1   3.5    1.0  1  PF03222.8  Tryptophan/tyrosine permease family
     0.0091   15.7   0.5       0.46   10.2   0.0    2.4  2  PF03988.7  Repeat of Unknown Function (DUF347)
  ------ inclusion threshold ------
      0.055   11.9   3.1      0.075   11.5   1.8    1.4  2  PF03845.8  Spore germination protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   5.9     7e-17   2.4e-13       8     155 ..       2     149 ..       1     150 [] 0.90

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 7e-17
   PF01490.13   8 avlnlikaivGaGvLaLPyAfkqlGllvGlillllvalislytlllLvkcsktla.vkgkrnksYgdlvyrllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdt..lhisnvyfilisaliiipLslirnlsaLsylSlla 155
                  +++ +++++ G+G+L+ Py ++++G++++ ill+++a++++  + +L+++  ++  ++g+++   +++ ++ +++    ++dl+i+v  fG  +sy+ ++g+l   +f+s+       +     i+i+++ ++p+++ r    ++y+Sl++
  MMETSP0890-20130614|38901_1   2 TTVQMVNSMLGSGILSFPYVLSETGIVLSAILLIMFAYLNYAVNIMLLETGAHVGmKTGDQSHIIATALKSEFAG---RLMDLCIAVMAFGSLLSYFNVMGNLGADLFKSTRPPdiGFNTYPGTIVITGILLSPFCFYRAYGDIAYVSLIS 149
                  67899*************************************************977777777777777666666...4******************************976446677788899************************997 PP

>> PF03222.8  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   3.5   7.5e-09   2.5e-05      14     114 ..       8     110 ..       2     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 7.5e-09
    PF03222.8  14 gtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaake..easfttlakkllGkkgniivalvllfllyiLlvAyisggGsilselleeas 114
                   ++ G+G+l+ P + +++g + s++lli+ + l  a  ++llE   ++    +     +a+ l  + +  ++ l ++++ +  l  y+   G++ ++l++++ 
  MMETSP0890-20130614|38901_1   8 NSMLGSGILSFPYVLSETGIVLSAILLIMFAYLNYAVNIMLLETGAHVGMktGDQSHIIATALKSEFAGRLMDLCIAVMAFGSLLSYFNVMGNLGADLFKSTR 110
                  6799***************************************99998875567777899999999999*************99*********9999998765 PP

>> PF03988.7  Repeat of Unknown Function (DUF347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.021        73      32      47 ..      25      40 ..       9      45 .. 0.77
   2 !   10.2   0.0   0.00014      0.46      12      47 ..      97     136 ..      94     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.021
    PF03988.7 32 ssavflallavlvaaq 47
                 + +v++a+l++++a++
  MMETSP0890-20130614|38901_1 25 TGIVLSAILLIMFAYL 40
                 5678889999998886 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00014
    PF03988.7  12 tlGttlGDlltks....lglGyavssavflallavlvaaq 47 
                  ++G  ++Dl+  +     g+ ++ +++v++++l+  + ++
  MMETSP0890-20130614|38901_1  97 VMGNLGADLFKSTrppdIGFNTYPGTIVITGILLSPFCFY 136
                  78999******966777****************9887765 PP

>> PF03845.8  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.8   2.2e-05     0.075       7      54 ..       2      43 ..       1      54 [. 0.83
   2 ?   -2.9   0.0      0.55   1.9e+03     215     239 ..      83     107 ..      69     114 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.2e-05
    PF03845.8  7 lfvlivlfqlGvgiLtlprslakqatdgWiavllggliilllvllylk 54
                 ++v +v+++lG+giL++p +l+++       ++l +++ +++++l + 
  MMETSP0890-20130614|38901_1  2 TTVQMVNSMLGSGILSFPYVLSETG------IVLSAILLIMFAYLNYA 43
                 78889********************......77777777777776664 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.55
    PF03845.8 215 vlisvllyllttiivilvlgveqlk 239
                  +++  +  ll+++ v++ lg++  k
  MMETSP0890-20130614|38901_1  83 IAVMAFGSLLSYFNVMGNLGADLFK 107
                  3444444455566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       426  (0.0311586); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.35s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 492.40
//
Query:       MMETSP0890-20130614|38911_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.017   14.9   0.0    1.2  1  PF10814.3 Protein of unknown function (DUF2562)


Domain annotation for each model (and alignments):
>> PF10814.3  Protein of unknown function (DUF2562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.2e-06     0.017      58     107 ..      30      81 ..       4      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.2e-06
    PF10814.3  58 etlaqelaaaqev..vanlPealqearrkrrrkkrplllagvavavlagGav 107
                  ++ +  laa +e+  v++ P+++++   ++r      +l+ v+ +v+agGa+
  MMETSP0890-20130614|38911_1  30 QSHVLRLAAWREAlgVTDSPNVVEDDAWRKRYASTLEVLVDVGCSVVAGGAA 81 
                  5556678888887558999*****9999999999999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       228  (0.0166764); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 288.26
//
Query:       MMETSP0890-20130614|38906_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-23   82.5   0.1    3.4e-23   81.6   0.0    1.4  1  PF04130.8 Spc97 / Spc98 family
  ------ inclusion threshold ------
      0.075   13.2   0.9       0.15   12.2   0.6    1.5  1  PF08243.6 SPT2 chromatin protein


Domain annotation for each model (and alignments):
>> PF04130.8  Spc97 / Spc98 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   4.9e-27   3.4e-23     270     542 ..      28     284 ..       4     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 4.9e-27
    PF04130.8 270 eqleasasslselssldrakleeaieslyelvskellkllleeq.dllehlralknyfLlgngdfidsfleeifdelrkpaksssllalnsllqellrassskdadesseedllvrsstktkdssnetlnstsisstedfkglealdgltldykvpwPLnliispealekYqriFryLlklkrvefvLekvwqelkkrakksgssrrkrepqlrkiqllrhkmlhfvdsl.qtYlqtdviesswselqeklakakdldeliraHdayLdsilrqc 542
                     +++ s  s + + ++++l   +++  e ++  l++ l+    +l++hl+alk+ +Ll +gdf+  +  ++ d l+ +a+s+ + + +  + +++ +  + +                + +  ++ + ++++ + ++ +   +     ldy +p+P++ ++ p+al+ Y r+++ +l    ve +L+++w++++ + +  ++  + ++  l+++ l r +m ++v++l q Y +  +++++w  l ++l+   +ld+li aHd+yL++++ q 
  MMETSP0890-20130614|38906_1  28 ATHKNKISIDSVFAYGNSPDLCTLVRERSEKANRCLVSALMGSKfQLMDHLKALKACLLLAQGDFTVLLVRKLADCLKPSASSAFSASGQHDIWTAVYSAIRGS----------------NAVKLSKLEACLRVVIISNNSKGASSRSSGLDYAPPKPIDVVVHPQALALYRRLHDTMLARAFVEAHLNDTWRQYRLAERALNRLPAHIRLVLHRSALARGRMAQLVQALgQRYNT--AVDANWAILVQQLKMGASLDQLILAHDTYLANVAIQV 284
                  3467889999999999*****************999998887555*******************************************9999999998888877................44566777777777777788888888899***********************************************99997777778888999999**************444666..*********************************9886 PP

>> PF08243.6  SPT2 chromatin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   2.2e-05      0.15      51      80 ..       3      32 ..       1      35 [. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
    PF08243.6 51 eifnkgkkrsyykrydedDaldaMEateee 80
                 +if  ++k+ y++ +dedD+ ++ Eat ++
  MMETSP0890-20130614|38906_1  3 NIFSTDSKQAYFVLDDEDDDKIQDEATHKN 32
                 79******************9999**9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.94
# Mc/sec: 1024.83
//
Query:       MMETSP0890-20130614|38913_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   26.6   0.0    6.2e-06   26.2   0.0    1.3  1  PF05050.7 Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> PF05050.7  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.5e-10   6.2e-06      89     143 ..      22      85 ..       3     125 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.5e-10
    PF05050.7  89 tievpvvtLDdf.leen....isrid.....llKiDvEGaElevLegaeetlkrcqpniivEvhe 143
                  + ++ v +LD++ + ++     + +d     l+K DvEG++l  ++gae+ +  c+p +++E  +
  MMETSP0890-20130614|38913_1  22 QGNILVASLDQLfFSQGsfksTTVLDrgcprLIKSDVEGMDLRMIAGAEKVIAECRPYLLFET-M 85 
                  55555666666655555555422223444449*****************************95.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       125  (0.00914277); expected 273.4 (0.02)
Passed bias filter:                      124  (0.00906963); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.62
# Mc/sec: 827.13
//
Query:       MMETSP0890-20130614|38918_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:00.80
# Mc/sec: 251.62
//
Query:       MMETSP0890-20130614|38919_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-35  121.5   0.0    5.2e-35  120.8   0.0    1.3  1  PF00609.14 Diacylglycerol kinase accessory domain
  ------ inclusion threshold ------
        0.1   11.9   2.9      0.049   13.0   0.6    1.5  2  PF04281.8  Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF00609.14  Diacylglycerol kinase accessory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   7.6e-39   5.2e-35       2     161 .]     140     306 ..     139     306 .. 0.88

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 7.6e-39
   PF00609.14   2 mnNYfSiGvDAkialgFhkaReekpelfnsrllnkliYlklglkkll.kkslk....nleekvele.....vdgkeielpkklegivvlNipsyagGadlwgeskkeeeklkfekqsvdDgllEvvglksvlhlgqvqvglk....kakrlaqaseikielkkeklpvQvDGep 161
                  ++NY+S+GvDA  a+ Fh+aR ++p++f+srl+n+l+Y++lgl+ +  +  +     +l   +el       ++++i+lp+ ++g++vlN++syagG+dlwg++++      f+k++  DgllE+v+ +s+++l++  v ++    +a+rl+qasei+i+l++ ++ +Q+DGep
  MMETSP0890-20130614|38919_1 140 LSNYISFGVDAAGAYAFHSARRAHPKRFSSRLKNQLLYAWLGLQATGgCCGCDgpppELPAVLELSlcdpnGQWTKIQLPQGCRGLIVLNLQSYAGGRDLWGHTSS------FRKPNDADGLLELVTTTSIFDLATKLVTTNgfggHARRLCQASEIRIRLTT-TIHMQIDGEP 306
                  79******************************************97555555400015555666659999999******************************999......999********************9888764222278***************.*********7 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.83   5.7e+03     111     128 ..      20      37 ..      18      42 .. 0.74
   2 ?   13.0   0.6   7.2e-06     0.049       5      88 ..      61     145 ..      59     159 .. 0.65

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.83
    PF04281.8 111 aieeeqqlvemEkemklq 128
                  a  +e++l++ ++em+  
  MMETSP0890-20130614|38919_1  20 ARYSEEMLIQHDQEMRSM 37 
                  556889999999999865 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 7.2e-06
    PF04281.8   5 tevedeeeqekeaaakekaeeesddeeedeedtdsdisddsdveedEtlldRivALkD..ivppttRkkisskvstttslvksgls 88 
                  + +e++e  e+ +  +++  ee+d+e+++eed  sd   ++d ++  ++ dR  AL D  +vp ++  k  s++++   ++++ +s
  MMETSP0890-20130614|38919_1  61 QVIEEDERRESINIDNQQNLEENDNEKKNEEDDFSDQ-GEEDASSAMSFDDRGRALIDshVVPSESVLKNGSTWRSYDGTLSNYIS 145
                  4566666665666666666667777777777766775.46666799**********886688888766666666655444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       750  (0.0548566); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.39s 00:00:01.08 Elapsed: 00:00:00.76
# Mc/sec: 1059.44
//
Query:       MMETSP0890-20130614|38920_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-52  177.9   9.9    2.2e-29  102.2   1.2    2.1  2  PF04142.10 Nucleotide-sugar transporter
    1.1e-06   28.2  19.6     0.0008   18.9   4.6    2.7  2  PF03151.11 Triose-phosphate Transporter family
    3.9e-06   26.8  27.9    6.5e-05   22.8   3.7    2.4  3  PF00892.15 EamA-like transporter family
    1.9e-05   23.6   8.6    5.4e-05   22.1   0.4    2.2  2  PF08449.6  UAA transporter family
  ------ inclusion threshold ------
      0.054   12.3   9.5      0.037   12.8   2.5    2.2  2  PF05653.9  Magnesium transporter NIPA
       0.19   11.2   1.7          5    6.6   0.5    2.7  2  PF14449.1  A pre-toxin domain with the TG motif
        1.2    8.9   5.1       0.37   10.6   0.2    2.5  2  PF05767.7  Poxvirus virion envelope protein A14


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   1.2   1.1e-32   2.2e-29      13     135 ..      28     154 ..      20     158 .. 0.90
   2 !   80.6   0.9   4.5e-26   8.8e-23     142     238 .]     206     302 ..     186     302 .. 0.95

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 1.1e-32
   PF04142.10  13 epsdtlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkes.ea...ekkreaeenivlGlvavlvacllsgfAgvYfEKiLKesn 135
                  e++ tl l+vPa++Y  q  l yv+l nl+aat+ v +q k++ttA+++v++++r+L + q ++l+llv+g vl q++ k+  ++   + +  +++n+++G++a l   ++sgfA vY EK++K  +
  MMETSP0890-20130614|38920_1  28 EWRGTLLLTVPAVLYNFQKTLEYVSLRNLNAATFAVLVQTKLFTTAICAVTFMGRSLRRAQVIALILLVIGCVLAQIDPKSCsTTpisNGEDVTAQNKLIGVIATLSIAFSSGFASVYTEKVIKAND 154
                  6889999***********************************************************************99874431214455569*****************************765 PP

  == domain 2    score: 80.6 bits;  conditional E-value: 4.5e-26
   PF04142.10 142 NiqlallgilfalltlllkdgekikekgffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgallV 238
                   iqla+ ++++ ++ ++l+d+++i+ +g+++G+ +  wl v ++a+gG+ va v+k+aD ilk++at++++vl+ ++s +lf+  ++++++lg + V
  MMETSP0890-20130614|38920_1 206 QIQLAFASLIIEGIWAILTDFHTIQSQGLWYGFGWEAWLAVSMTALGGIAVAAVLKFADAILKGYATAISVVLTGLVSHFLFGTILNIQYALGMINV 302
                  69*******************************************************************************************9876 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   4.6   4.1e-07    0.0008      49     150 ..       5     101 ..       1     101 [. 0.84
   2 !   14.1   3.4   1.2e-05     0.024       1     152 [.     128     310 ..     128     311 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.1e-07
   PF03151.11  49 vllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                   + +++++++ +++g +++ + +    s +r++lll +++vl+ ++  ++++ l +  + t+ v+   k + + + +v ++g+ +   ++++l++ ++G vl
  MMETSP0890-20130614|38920_1   5 ASAIWIFVIDNQSIG-SIFCFLK----SEWRGTLLLTVPAVLYNFQKTLEYVSLRNLNAATFAVLVQTKLFTTAICAVTFMGRSLRRAQVIALILLVIGCVL 101
                  455666666666633.3333333....467********************************************************************9875 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.2e-05
   PF03151.11   1 Gfilalaasllfalrlvltqlllrkkl........................................kkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaf.lllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  G+i++l  ++++++ +v+t+++ + +                                           ++k     ++i+l+++++i+  ++++l++++ +  ++           ++++ + ++ +v++ +l  +a+  +l+ + ++    a ++  vl+ ++s ++fg+ ++++ +lG++  l+ +v+Y+
  MMETSP0890-20130614|38920_1 128 GVIATLSIAFSSGFASVYTEKVIKANDslssserspdkdsplplqqyknkdssdidtdekvlpnpeeSCKKKFGLAYTQIQLAFASLIIEGIWAILTDFHTIQSQG----------LWYGFGWEAWLAVSMTALGGIAVaAVLKFADAILKGYATAISVVLTGLVSHFLFGTILNIQYALGMINVLASMVIYN 310
                  788888889999************9999************************************99988888999999**********************944444..........4477777777777777776555515666667999999***************************************8 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   3.7   3.4e-08   6.5e-05      44     124 ..      19     102 ..       2     104 .. 0.73
   2 ?   -3.6   0.0       4.9   9.6e+03      88      94 ..     132     138 ..     124     150 .. 0.47
   3 !   13.0   7.6   3.6e-05      0.07      13     124 ..     200     309 ..     196     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.4e-08
   PF00892.15  44 p.ialislkdilallllgllgtvlgy..llffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  + i+ + ++++   lll + +++  +   l + +l++++a++ ++++ +    t++++v + g +l+  q+++++l ++G++l 
  MMETSP0890-20130614|38920_1  19 GsIFCFLKSEWRGTLLLTVPAVLYNFqkTLEYVSLRNLNAATFAVLVQTKLFTTAICAVTFMGRSLRRAQVIALILLVIGCVLA 102
                  3544445555555555555543322211588889***********************************************985 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.9
   PF00892.15  88 slePvft 94 
                  +l+ +f+
  MMETSP0890-20130614|38920_1 132 TLSIAFS 138
                  2222222 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 3.6e-05
   PF00892.15  13 llesvspltitayrlliagillilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  +   ++ +++++  l+i gi +++l  +   + ++  +  + + + l++  t+lg ++ +  lk+ +a   +  t++++v+t l s++l+g  l+++  lg++ +l+++++ 
  MMETSP0890-20130614|38920_1 200 FGLAYTQIQLAFASLIIEGI-WAILTDFHTIQ-SQGLWYGFGWEAWLAVSMTALGGIAVAAVLKFADAILKGYATAISVVLTGLVSHFLFGTILNIQYALGMINVLASMVIY 309
                  44457888999999999994.44444444444.89**********************************************************************9999876 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   2.8e-08   5.4e-05      72     181 ..      40     154 ..      29     161 .. 0.89
   2 !    5.5   1.4     0.003       5.9     236     297 ..     250     311 ..     197     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.8e-08
    PF08449.6  72 alfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv.....Gilllvlallldallgavqeklykkyg 181
                  +l+   ++l++ +L+ ++  t  ++  +kl ++ i  v ++g++ +  q+++ +l+++G++++ +  ++ s+   +++e  +      G++  +   + +++ + ++ek++k++ 
  MMETSP0890-20130614|38920_1  40 VLYNFQKTLEYVSLRNLNAATFAVLVQTKLFTTAICAVTFMGRSLRRAQVIALILLVIGCVLAQIDPKSCSTTPISNGEDVTAqnkliGVIATLSIAFSSGFASVYTEKVIKAND 154
                  666777899999999999999999999**************************************99999988888877655577889**999999999***********99875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.003
    PF08449.6 236 yvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkal 297
                  ++g   v ++++  +a+     t +  +++ l+S +lFg  l +q+ lG++ V+++++++  
  MMETSP0890-20130614|38920_1 250 ALGGIAVAAVLKFADAILKGYATAISVVLTGLVSHFLFGTILNIQYALGMINVLASMVIYNS 311
                  4444456666666666666666677778899*************************999876 PP

>> PF05653.9  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.019        37      89     226 ..      71     103 ..      32     153 .. 0.73
   2 ?   12.8   2.5   1.9e-05     0.037      47     120 ..     236     308 ..     210     316 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.019
    PF05653.9  89 isavlasllLkekLkllgllGcvlcivGstvivihaPkeeeiesvkevadlltdpgflvyvilvvlvvlililaveprlgkknilvyiticsllgsltvmsvkalgiaikltlsGknqlkyalawilvvvvvicvvlq 226
                    a+ a+ ++   L+  +++ ++l ++G ++                                                                                                          q
  MMETSP0890-20130614|38920_1  71 TTAICAVTFMGRSLRRAQVIALILLVIGCVL---------------------------------------------------------------------------------------------------------AQ 103
                  4556666666666666666666666666543.........................................................................................................33 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.9e-05
    PF05653.9  47 ylkevlwwaglllmivGeianFaaYafaPatLvtPLGalsviisavlasllLkekLkllgllGcvlcivGstvi 120
                  y   +  w  + ++++G ia  a   fa a+L     a+sv++  +++++l+   L++   lG++   + s+vi
  MMETSP0890-20130614|38920_1 236 YGFGWEAWLAVSMTALGGIAVAAVLKFADAILKGYATAISVVLTGLVSHFLFGTILNIQYALGMINV-LASMVI 308
                  5556778999999**************************************************9865.455555 PP

>> PF14449.1  A pre-toxin domain with the TG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.061   1.2e+02      32      63 ..     116     146 ..     113     160 .. 0.70
   2 ?    6.6   0.5    0.0026         5      38      67 ..     239     268 ..     238     274 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.061
    PF14449.1  32 tgeklsgwdralaglsvlsggtpvgkigkvgk 63 
                  +ge ++  + +++++++ls +  +++++ v++
  MMETSP0890-20130614|38920_1 116 NGEDVTAQNKLIGVIATLSIA-FSSGFASVYT 146
                  69***************9754.3555555544 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0026
    PF14449.1  38 gwdralaglsvlsggtpvgkigkvgkdgek 67 
                  gw+++la+ ++ +gg+ v+ + k +  + k
  MMETSP0890-20130614|38920_1 239 GWEAWLAVSMTALGGIAVAAVLKFADAILK 268
                  7**************999999998877766 PP

>> PF05767.7  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00019      0.37       7      72 ..      80     145 ..      74     162 .. 0.74
   2 ?   -1.0   0.2      0.79   1.6e+03      49      66 ..     292     310 ..     280     313 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00019
    PF05767.7   7 lknyysgvlivGivLLilacifAfiefskstkpsdktwralsiiaFilgivlllglllfsmygryC 72 
                  + +    + ++ ++LL++ c++A i+     ++  +    ++    ++g++++l++ + s++    
  MMETSP0890-20130614|38920_1  80 MGRSLRRAQVIALILLVIGCVLAQIDPKSCSTTPISNGEDVTAQNKLIGVIATLSIAFSSGFASVY 145
                  5555666778899*************7655545555677788888899999999999999996544 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.79
    PF05767.7  49 iiaFilgivlll.glllfs 66 
                   i + lg++ +l ++++++
  MMETSP0890-20130614|38920_1 292 NIQYALGMINVLaSMVIYN 310
                  5778899997763677775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       717  (0.0524429); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.35s 00:00:01.01 Elapsed: 00:00:00.60
# Mc/sec: 1274.06
//
Query:       MMETSP0890-20130614|38926_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       469  (0.0343037); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.78
# Mc/sec: 620.60
//
Query:       MMETSP0890-20130614|38928_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.36s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 355.82
//
Query:       MMETSP0890-20130614|38948_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.96
# Mc/sec: 828.74
//
Query:       MMETSP0890-20130614|38954_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-57  190.8   3.8    7.9e-57  190.6   2.6    1.1  1  PF00731.15 AIR carboxylase
  ------ inclusion threshold ------
      0.011   15.0   0.3      0.013   14.8   0.2    1.4  1  PF06506.6  Propionate catabolism activator
      0.014   15.4   0.4        6.9    6.7   0.1    2.4  2  PF13380.1  CoA binding domain


Domain annotation for each model (and alignments):
>> PF00731.15  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   2.6   1.7e-60   7.9e-57      18     149 ..       2     137 ..       1     138 [. 0.93

  Alignments for each domain:
  == domain 1    score: 190.6 bits;  conditional E-value: 1.7e-60
                  HHHHHHHHTT-EEEEEE--TTT-HHHHHHHHHHCCTSS-EEEEE-----------HHHH-SS-EEE-----TTT---CHHHHHH--------EE-S..SHHHHHHHHHHHHCCC....-HHHHHHHHHHHHHHHHC CS
   PF00731.15  18 eaakvlkelgieyevkvvSaHrtperlleyakeaeerglkviiagAGgaahLpgmvaslttlPVigvPvkskalkgldsllsivqmpkgvpvatvaigkaknAallAaqilalk....deelaekleeyreklaee 149
                  +a+++l+e+ ++yev++vSaHrtp+rl++ya++a++rg++viiagAGgaahLpgmva++ttlPVigvPvk++al+gldsl+sivqmpkgvpvatvaig+a+nAa+lA +ila+      +el++kl++y +k++++
  MMETSP0890-20130614|38954_1   2 AACEMLDEFSVSYEVSIVSAHRTPDRLVTYAQSARKRGIQVIIAGAGGAAHLPGMVAAMTTLPVIGVPVKTSALSGLDSLYSIVQMPKGVPVATVAIGNAANAAILATRILACGtstqANELSDKLAAYADKQRTS 137
                  799************************************************************************************************************9762222667888888888887765 PP

>> PF06506.6  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   2.8e-06     0.013       9      64 ..      13      73 ..       5     152 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.8e-06
                 .HT-EEEE..--HHHHHHHH---T..TT-SEEEE---HHHHH....HTT-SS-EEE----HH CS
    PF06506.6  9 eaevevve..asledaveaaralveaegvdviisrGgtaall....rervsvPvveikvsgf 64
                 ++ev++v+  ++ ++ v++a+ + +++g++vii+  g aa+l     + + +Pv+ + v++ 
  MMETSP0890-20130614|38954_1 13 SYEVSIVSahRTPDRLVTYAQSA-RKRGIQVIIAGAGGAAHLpgmvAAMTTLPVIGVPVKTS 73
                 4555555411567899*******.89********988887651111667799**99988654 PP

>> PF13380.1  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0018       8.3      53      87 ..      13      48 ..       2      53 .. 0.83
   2 ?    6.7   0.1    0.0015       6.9      27     105 ..      62     139 ..      54     145 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0018
    PF13380.1 53 l.pvdlvsvftppervpavveealalgakavwfqpg 87
                   +v +vs  + p+r++++++ a ++g+++++  +g
  MMETSP0890-20130614|38954_1 13 SyEVSIVSAHRTPDRLVTYAQSARKRGIQVIIAGAG 48
                 25899*************************997666 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
    PF13380.1  27 gypvipVnpkeeeilgvkvyaslae.dlpvdlvsvftppervpavveealalgakavwfqpgseneeaaeaaeeagirvv 105
                   +pvi V  k +++ g ++  s+ +  + v +++v++  ++ +a+++  +   a +   q+ + ++++a++a +++  v+
  MMETSP0890-20130614|38954_1  62 TLPVIGVPVKTSALSGLDSLYSIVQmPKGVPVATVAIGNAANAAILATRI--LACGTSTQANELSDKLAAYADKQRTSVI 139
                  579999999999999*999999997444999******9999999997653..3456667888999999999888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       653  (0.0477618); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.38s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 485.12
//
Query:       MMETSP0890-20130614|38961_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.66
# Mc/sec: 148.86
//
Query:       MMETSP0890-20130614|38966_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-05   22.9   0.0      0.051   13.6   0.0    2.4  2  PF00041.16 Fibronectin type III domain
  ------ inclusion threshold ------
      0.099   11.1   0.1       0.14   10.6   0.0    1.1  1  PF06785.6  Uncharacterised protein family (UPF0242)


Domain annotation for each model (and alignments):
>> PF00041.16  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00085       5.8      12      79 ..       8      75 ..       4      81 .. 0.61
   2 !   13.6   0.0   7.4e-06     0.051      13      74 ..     116     176 ..     106     183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00085
                 CSSEEEEEEE-BSHHSSTBSEEEEEEEEE-TTC.....CEEEEEECCTTSEEEEES--TT-EEEEEEEEEC-- CS
   PF00041.16 12 tstsltlsWsppkdgggpitgYeveyrekggge.....ewkeftvprtttsvtltgLkpgteYefrVqavnga 79
                  + s+ ++W p +       +Y ++ r + ++      e ++ +++  +ts+  ++L  +  YefrV+a++++
  MMETSP0890-20130614|38966_1  8 DEQSVCIRWAPID----GARRYALQMRVCMKSTqdkaeEFQTLSRSIKSTSARKNHLH-DELYEFRVAAITEE 75
                 5778999999994....44555555533322222243433333333335457777775.789*******9987 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.4e-06
                  SSEEEEEEE-BS.HHSSTBSEEEEEEEEE-TTCCEEEEEECCTTSEEEEES--TT-EEEEEEE CS
   PF00041.16  13 stsltlsWsppk.dgggpitgYeveyrekgggeewkeftvprtttsvtltgLkpgteYefrVq 74 
                  + s+t+ W+  + +g+ p   + +e +++++   w++++   + ++v  ++L+ g++Y fr++
  MMETSP0890-20130614|38966_1 116 AISATILWETLTpQGHVPRPPFALEMCTDQSR--WQNVSSNLNGDRVRKKNLESGKSYYFRIK 176
                  56889999999999999999999977765444..666666666668***************98 PP

>> PF06785.6  Uncharacterised protein family (UPF0242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.1e-05      0.14     144     185 ..      23      64 ..      18      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.1e-05
    PF06785.6 144 qclklqldalvqecrekeeesqelnrelaetlayqqalndey 185
                  +   lq+   ++ +++k ee q+l r ++ t a ++ l+de 
  MMETSP0890-20130614|38966_1  23 RRYALQMRVCMKSTQDKAEEFQTLSRSIKSTSARKNHLHDEL 64 
                  5667999999******************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       435  (0.0318169); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 817.39
//
Query:       MMETSP0890-20130614|38987_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   26.7   0.0    9.8e-06   25.6   0.0    1.6  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   7.2e-10   9.8e-06       2     204 ..      23     235 ..      22     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 7.2e-10
                  HH---EEE-----HHHHHHHHHH---THHHHHT-------EE----B-----BS.GGTEEEE---HHH.................HHHHHHHHH----SEEE...............EEEEE....E---S-----E.EEE-GGGTS-EE----EE-EEEESS-B-S----EEEE---------.......................-EEE----..............----.. CS
    PF05721.8   2 eedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedgll.eksinkvghflhp.................rkvadlvrailgqdvyva............avlqsmyqd..ifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNr 204
                  +++G++ i ++l+ +   +l+a+i + + +++++g+++    +e+ +++  ++   +   + + +++p                 + + + + ++l++    +             + qs+      +  + +G+  q++H D+ + +  p +++v++ +  +  t   G++ f P S   + +p       +++++              +++++aGdav+++ +llH ++aN+
  MMETSP0890-20130614|38987_1  23 RRQGVVRINNVLDRAFASRLKAQILD-DHSYWYDGSNVVMRDREEVIDNDPRHIpGTRLRFKQQIAAPfagmradillpieddqvKIFLNTATSVLSEIL--QtgatrlpqneakKREQSLQLVecAALVAWPGANHQTVHADYNLGSSLP-PRLVTFVYLQDVPTCVCGATVFFPESSAAKTKP-------PSATC-----------ALLSINIRAGDAVIYDASLLHFGAANT 235
                  89************************.899***999998888888888866666978888888888889********98888888444444444444333..13566688888874455554446855556679999***********998.9*****99999999**************96664.......44444...........59*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:00.69
# Mc/sec: 1017.58
//
Query:       MMETSP0890-20130614|38981_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.6   0.2      0.041   13.9   0.0    2.0  2  PF00611.18 Fes/CIP4, and EFC/F-BAR homology domain


Domain annotation for each model (and alignments):
>> PF00611.18  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     3e-06     0.041       3      87 ..      24     108 ..      22     112 .. 0.85
   2 ?   -3.3   0.1       0.7   9.6e+03      76      87 ..     134     145 ..     123     158 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3e-06
   PF00611.18   3 fwselkdgfkvllkrlkqgiklledlakflkeRaeiEkeYakkLeklakkylkkkkksseegslkkaweklleeteklakqhlkl 87 
                  f + l  +++ + +r +q      ++   lke a++E+ Y+k L++ a   +k  k++ e   + +a++ +++ +++ ++ h++l
  MMETSP0890-20130614|38981_1  24 FATHLVGSVESVKRRSSQTQSEYGEVHRALKELAAVEEAYGKGLKRVAGMLQKISKRDVEFVGFADAMDAVRSNLNHGGDMHISL 108
                  666667788999999999999999**************************99887777777888999999999888888777765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.7
   PF00611.18  76 eteklakqhlkl 87 
                   t++ + qh++l
  MMETSP0890-20130614|38981_1 134 MTQRASAQHKQL 145
                  344444455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1597  (0.116808); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:00.95
# Mc/sec: 1329.35
//
Query:       MMETSP0890-20130614|38983_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   51.0   0.0    2.8e-13   49.7   0.0    1.6  1  PF00566.13 Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> PF00566.13  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0     2e-17   2.8e-13      35     181 ..     111     288 ..      95     320 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2e-17
   PF00566.13  35 ksklekeedske.esqIkkDvpRtfp.edelfkneegqnqLeriLkayaiynpe.igYcqGmnfiaallLlvvldeee............afwcfvsLl..................nkklrdlfkpslpglqrdlqileellkkhdpelykhlekeeldlslfaikWfltlfvrelple 181
                  ksk +k+ +s +  ++I+kD++R      e++  ++  +++ ++L ++a  +   +gY qGm++++ l+++v +de              af++f +++                  n +l+++ k++ p l       + ll k+dp+ +      +l+ +l+ ++W+  lf+re++ +
  MMETSP0890-20130614|38983_1 111 KSKWDKYHESVDlREEIRKDLERLTVaGFEDDHFHPVIESMLNVLAVWASARGGsTGYRQGMHEVLVLVIIVIQDEAFyggglepsieadAFALFDAIMvqhkpmfaitddteddagNTNLKKNQKQKSPILALLRRAQSTLLAKIDPSFAHVV--SSLEAQLYGLRWIRLLFLREFKRS 288
                  34444444444449*********999655888899*****************965***************88877777999999999999*********8555544444444433333333333333333333333377777777777755555..46888****************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.39s 00:00:01.26 Elapsed: 00:00:00.93
# Mc/sec: 1458.43
//
Query:       MMETSP0890-20130614|38993_1  [L=1002]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.3e-115  384.0   0.0   1.3e-114  383.2   0.0    1.4  1  PF00521.15 DNA gyrase/topoisomerase IV, subunit A
    3.4e-10   39.5   0.0    8.9e-10   38.2   0.0    1.8  1  PF01751.17 Toprim domain
  ------ inclusion threshold ------
        1.3    8.2   5.7        3.2    6.9   4.0    1.6  1  PF10422.4  Monopolin complex subunit LRS4


Domain annotation for each model (and alignments):
>> PF00521.15  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.2   0.0  2.9e-118  1.3e-114       1     426 []     333     808 ..     333     808 .. 0.93

  Alignments for each domain:
  == domain 1    score: 383.2 bits;  conditional E-value: 2.9e-118
   PF00521.15   1 RaiPsvvDGLKPvqRriLyamfkllnldkkekKvaqlvGev..mgkYhPHGdaslyeaivrlAqdfvg..niplldgqGnfGsrldgdkd.AaaRYietrlsklarellkdidkelvdyvenyDgsekePevlppiiPllLvnGaeGIavGmatkipphnlkevidaliallkgeea.............ellklelgPdfptgggii.gkkeikeayktgrGkievrakieiee.ktivitElPygvntekliekieelv..kekkik.isdirde.sdrgvrivielkr...gakaekvleklykktkLqssisvnnlvlfdk.k..pkylslkeilkeflevrlevlkkrkeyelekleerleilegllkalnkidevievirksle.kkkakkeLieelse.......................................eqaeyllemrlrrltkeeveklekeieelekeieelektlaklkklikkelk 426
                  R+iP +vDGLKP+qR+iL+a+fk ++l k+e+Kvaql+G+v  +++Yh HG++sl+++iv++Aqdf+g  n++ll++ G+fG+r +g+kd A+aRYi+t+l+++ar l+++ d+ +++y ++ Dg+++eP++++p+iPl+L+nG++GI++G +++ip+++++++i+ l+a++  +               +  + +l P +++++g+i  + +      t+ G + +++ +e  + +ti+i+ElP +++t+++ +++e  v  +ek+   i+d+ d+ +++++++++++++     +aek ++ l k +kL++sisv+n  lfd  +  +ky s+ ei+++f+++r+e+++krk  +l+ l+++++il+      nk+++v++v++++l+ ++++k+++i++l++                                       + ++yll+m++ +lt e+v++l++e+++++ ++++l+++++   +++ ++l+
  MMETSP0890-20130614|38993_1 333 RSIPCLVDGLKPSQRKILFACFK-RKL-KQEIKVAQLAGYVseHAAYH-HGEMSLVSTIVNMAQDFCGsnNLNLLTPAGQFGTRIMGGKDsASARYIFTKLEPVARLLFHPDDDAVLEYLDD-DGQSIEPKYYIPVIPLVLCNGVDGIGTGHSSSIPNYDPRQIINELKAMITRRGLdldleddrldandD-GHSILYPNYRGFRGTInPRVG------TQ-GGFICTGLYERIDdETIQISELPPKKWTQDYRQFLEAGVvgSEKEAAwIKDWTDNgTETSIQFTVKVTDpkiLDNAEKSEGGLAKLFKLTTSISVTNYNLFDAyGviTKYNSPYEIMDAFYKIRIEFYQKRKANMLNILNNDVKILN------NKVNFVLAVVESRLHvNNRKKQDIIHDLQAmgfdaidpaikkntskalqtideedsdedtslpattggtAGYDYLLKMPIFSLTLERVNSLRAELASKNVDLNTLHSKSEC--DIWLEDLD 808
                  9**********************.888.********************.*************************************************************************.*************************************************9997777777775555532.344789**********43344......44.555555554444447**********************9988777888899*****8888*******9986433358888889*********************669*****************************************......*********************************************************************88***************************************9..*****996 PP

>> PF01751.17  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   1.9e-13   8.9e-10       1      80 [.      84     190 ..      84     203 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 1.9e-13
                  EEEEESSHHHHHHHHTTTT...E.TEEEEEC----EESHS...........HHHHHHHH.............HTSSEEEEE--SS----HHHHHHHHHHTC-HHCEC CS
   PF01751.17   1 elvivEgpskaktikkalg...sdfqavvalkGhilnlek...........ikelkela.............kradkiilatDpDreGeaiawellellkrlnpsli 80 
                  +l+++Eg+s+ + + + l    +d++ v++lkG+ ln+             i+ + + +             +r+++++++tD+D++G++i+ +l++++ ++ psl 
  MMETSP0890-20130614|38993_1  84 TLILTEGDSAKALAVSGLAvvgRDTYGVFPLKGKPLNVRDatsvqimkneeIQHVVKILglnfkhnytttkgLRYGHLMIMTDQDHDGSHIKGLLINMFHKFWPSLL 190
                  5999*****999999988899999**************99***77777777666666669999***************************************99986 PP

>> PF10422.4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.0    0.0007       3.2     159     234 ..     880     962 ..     834     974 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0007
                  XXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    PF10422.4 159 LlSP.....ivgtrqpnatsgsplsvtPsspsaqskq.....PsglrellkhgddTifdnvsdindddtdedsessflletiqptk 234
                   +SP     ++ +r++   + +p +  P  psa ++         ++ +++   d  + +v  i ddd+d+ +e +  + + ++  
  MMETSP0890-20130614|38993_1 880 EFSPakaspLQVKRSR--AAPKPSAAAPPKPSAPRAPappkpKPPAKPTKSTKSDAAPKKVIVIDDDDDDDSDEDMETVVV-ERKT 962
                  2444444339999988..667788888878887777666664246999**********99988777766665555555444.3322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       640  (0.046811); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:01.33
# Mc/sec: 1805.38
//
Query:       MMETSP0890-20130614|38996_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       901  (0.0659011); expected 273.4 (0.02)
Passed bias filter:                      645  (0.0471767); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:01.12
# Mc/sec: 282.43
//
Query:       MMETSP0890-20130614|39002_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-06   27.0   0.0    7.1e-06   26.2   0.0    1.6  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   5.2e-10   7.1e-06     113     164 .]      66     113 ..      25     113 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5.2e-10
                  EECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23 113 dakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                  ++  + p++++ NH  +pN ++ ++    ++ v++ ++ d + G++++ +Yg
  MMETSP0890-20130614|39002_1  66 HGFSMLPYIDLANHHSTPNIRIAYD----DQGVTMLTISDLQSGDQIYTSYG 113
                  6788**********999*******9....9*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       276  (0.0201872); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.38s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 878.66
//
Query:       MMETSP0890-20130614|39010_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   12.8   0.1      0.027   12.8   0.1    1.0  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-06     0.027     137     183 ..       2      47 ..       1      54 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-06
   PF01490.13 137 ipLslirnlsaLsylSllaavsslyyivilvlvvaelvklelqgvse 183
                  +pL+l r+ls L+ +Sl+++ ++l+  ++++++ a ++++++qg+  
  MMETSP0890-20130614|39010_1   2 LPLALARDLSGLAASSLIGIAAVLL-SAAVIAIRAIDGTYSAQGIFA 47 
                  79*********************97.799999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 205.94
//
Query:       MMETSP0890-20130614|39014_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.36s 00:00:00.86 Elapsed: 00:00:00.88
# Mc/sec: 626.32
//
Query:       MMETSP0890-20130614|39027_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-15   54.4   0.3    2.2e-07   29.5   0.0    2.2  2  PF00036.27 EF hand
    5.3e-15   53.7   0.5      5e-07   28.9   0.0    2.1  2  PF13405.1  EF-hand domain
    5.5e-15   53.8   1.0    8.5e-07   27.9   0.1    2.2  2  PF13202.1  EF hand
    5.8e-11   42.2   0.5    1.5e-09   37.7   0.5    2.0  1  PF13499.1  EF-hand domain pair
    3.9e-09   35.8   1.5    0.00013   21.3   0.1    2.2  2  PF13833.1  EF-hand domain pair
  ------ inclusion threshold ------
       0.05   13.2   0.1       0.12   12.0   0.0    1.6  2  PF08044.6  Domain of unknown function (DUF1707)
       0.14   11.9   0.8        3.3    7.3   0.0    2.0  2  PF05279.6  Aspartyl beta-hydroxylase N-terminal region
       0.45   10.2  10.8        3.1    7.5   1.9    3.0  2  PF00404.13 Dockerin type I repeat


Domain annotation for each model (and alignments):
>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.2e-08     2e-05       5      26 ..       4      25 ..       3      27 .. 0.91
   2 !   29.5   0.0   1.3e-10   2.2e-07       2      28 ..      37      63 ..      36      64 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.2e-08
                 HHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  5 aFkefDkDgdGkIsfeEfkeal 26
                 +F+ fD+DgdG I+  E+ + l
  MMETSP0890-20130614|39027_1  4 LFRAFDTDGDGNIDSTELAAGL 25
                 6*****************9877 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHCTTTSSEBEHHHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkealkk 28
                 ++ aF +fD DgdG+I++ E+k++l++
  MMETSP0890-20130614|39027_1 37 IRAAFCLFDADGDGTIDLGEMKRYLAS 63
                 899********************9986 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.7e-08   2.9e-05       5      27 ..       4      26 ..       3      31 .. 0.92
   2 !   28.9   0.0   2.9e-10     5e-07       1      27 [.      36      62 ..      36      69 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.7e-08
                 --GCC-------B---HHHHHHH CS
    PF13405.1  5 aFklfDkdgdGkidaeELrdaLr 27
                 +F++fD+dgdG id  EL + L+
  MMETSP0890-20130614|39027_1  4 LFRAFDTDGDGNIDSTELAAGLS 26
                 7******************9997 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 2.9e-10
                 HHH---GCC-------B---HHHHHHH CS
    PF13405.1  1 elreaFklfDkdgdGkidaeELrdaLr 27
                 ++r+aF lfD dgdG+id+ E+++ L 
  MMETSP0890-20130614|39027_1 36 RIRAAFCLFDADGDGTIDLGEMKRYLA 62
                 69*********************9886 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1     5e-10   8.5e-07       4      23 ..       4      23 ..       2      26 .. 0.89
   2 !   24.8   0.0   4.8e-09   8.2e-06       1      24 [.      37      61 ..      37      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5e-10
                 HHHHH--S----B-HHHHHH CS
    PF13202.1  4 tFrafDlNgDGkIsreELkr 23
                 +FrafD++gDG I+  EL +
  MMETSP0890-20130614|39027_1  4 LFRAFDTDGDGNIDSTELAA 23
                 6*****************86 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 4.8e-09
                 HHHHHHHH--S----B-HHHHHH.H CS
    PF13202.1  1 lkdtFrafDlNgDGkIsreELkr.l 24
                 ++++F  fD++gDG+I+  E+kr l
  MMETSP0890-20130614|39027_1 37 IRAAFCLFDADGDGTIDLGEMKRyL 61
                 6778889**************9955 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.5   8.8e-13   1.5e-09       6      65 ..       5      60 ..       2      61 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 8.8e-13
    PF13499.1  6 FkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvlsfeEflqa 65
                 F+++D+dgdg +d +eL + l  +     +++  + +++ f  +D +gdG++++ E+  +
  MMETSP0890-20130614|39027_1  5 FRAFDTDGDGNIDSTELAAGLSLWC----RGSQSDRIRAAFCLFDADGDGTIDLGEMKRY 60
                 *************************....99999999*******************9876 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   7.8e-08   0.00013      29      50 ..       3      24 ..       1      27 [. 0.88
   2 !   14.5   0.0     1e-05     0.017      26      52 ..      35      62 ..      21      63 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 7.8e-08
    PF13833.1 29 ilfrefDtdgdGkisfeEFcvl 50
                 ilfr+fDtdgdG i+  E  + 
  MMETSP0890-20130614|39027_1  3 ILFRAFDTDGDGNIDSTELAAG 24
                 89*************9998765 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1e-05
    PF13833.1 26 e.vdilfrefDtdgdGkisfeEFcvlle 52
                 + +++ f +fD+dgdG i++ E +++l+
  MMETSP0890-20130614|39027_1 35 DrIRAAFCLFDADGDGTIDLGEMKRYLA 62
                 558889999**********998888775 PP

>> PF08044.6  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.2   2.1e+03      21      29 ..      13      21 ..       6      25 .. 0.77
   2 ?   12.0   0.0   6.9e-05      0.12       2      36 ..      30      64 ..      29      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.2
    PF08044.6 21 eGrLtleEy 29
                 +G ++ +E+
  MMETSP0890-20130614|39027_1 13 DGNIDSTEL 21
                 788888886 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.9e-05
    PF08044.6  2 RasDadReqvadlLrealaeGrLtleEydeRleaa 36
                 R s +dR ++a  L +a ++G ++l E  + l+ +
  MMETSP0890-20130614|39027_1 30 RGSQSDRIRAAFCLFDADGDGTIDLGEMKRYLASV 64
                 55889**********************98766655 PP

>> PF05279.6  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.025        42      47      57 ..       7      17 ..       3      25 .. 0.87
   2 ?    7.3   0.0    0.0019       3.3      46      63 ..      42      59 ..      35      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.025
    PF05279.6 47 vYDaDGDGDFD 57
                  +D+DGDG  D
  MMETSP0890-20130614|39027_1  7 AFDTDGDGNID 17
                 58******998 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0019
    PF05279.6 46 gvYDaDGDGDFDVdDAKv 63
                   +DaDGDG  D  + K 
  MMETSP0890-20130614|39027_1 42 CLFDADGDGTIDLGEMKR 59
                 579********9987775 PP

>> PF00404.13  Dockerin type I repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.9    0.0018       3.1       1      11 [.       9      19 ..       9      19 .. 0.93
   2 ?    5.4   0.8    0.0083        14       3      20 ..      47      61 ..      45      62 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0018
                 -TT-SS--SHH CS
   PF00404.13  1 DVNgDGkVnal 11
                 D +gDG+++++
  MMETSP0890-20130614|39027_1  9 DTDGDGNIDST 19
                 89*******97 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0083
                 T-SS--SHHHHHHHHHHH CS
   PF00404.13  3 NgDGkVnalDlallkkyl 20
                 +gDG++   Dl  +k+yl
  MMETSP0890-20130614|39027_1 47 DGDGTI---DLGEMKRYL 61
                 566665...666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       171  (0.0125073); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.79
# Mc/sec: 230.54
//
Query:       MMETSP0890-20130614|39030_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-31  107.4   0.0      6e-31  107.3   0.0    1.0  1  PF01747.12 ATP-sulfurylase


Domain annotation for each model (and alignments):
>> PF01747.12  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   4.4e-35     6e-31     108     214 ..       2     113 ..       1     114 [] 0.92

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 4.4e-35
                  HHHHHH----EEEE-------B......BSS-TTHHHHHHHHHCTTTTSEEEE---EEEETTTTEEEETCCS.STTGGGEE--HHHHHHHHH-.----TTTS-HHHHHHHHHC CS
   PF01747.12 108 aiirknyGcthfivGrdhagvg......dyYgpyeaqeifdkaakelgieivkfreaaYckkcgemasektcphgkeerlkisGtklrellreGeeppeefmrpevakvlley 214
                  ++irkn+Gcthfi+Grd+ag++      d+Yg+y+aq+   ++  elg++ v+  +++Y++++g + ++++++++  e+lk+sGtk+r++lr+G+++pe+f +++v++vl+++
  MMETSP0890-20130614|39030_1   2 MMIRKNFGCTHFIIGRDMAGCKssidgeDFYGAYDAQDFAIEHGPELGVQAVPSLNLVYTEEEGYV-TAEDAKEKGYESLKLSGTKFRSMLRAGDDIPEWFAFKSVVDVLRQA 113
                  689********************************************************9998888.556665666666*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       200  (0.0146284); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:01.12
# Mc/sec: 243.91
//
Query:       MMETSP0890-20130614|39036_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      346  (0.0253072); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.39s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 579.42
//
Query:       MMETSP0890-20130614|39039_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   12.2  24.5    2.3e+02    1.0   0.1    3.9  2  PF01442.13 Apolipoprotein A1/A4/E domain
       0.27   10.7  11.9        1.6    8.2   0.4    3.1  2  PF08703.5  PLC-beta C terminal
        2.5    7.7   5.5        9.1    5.9   0.6    2.6  2  PF10173.4  Mitochondrial K+-H+ exchange-related


Domain annotation for each model (and alignments):
>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.05   2.3e+02      94     126 ..      12      44 ..       2      78 .. 0.52
   2 ?   -3.0  14.4      0.84   3.8e+03      32     130 ..     299     397 ..      68     404 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.05
                  HHHHHHHH------------HHHHHH------- CS
   PF01442.13  94 lreqLapvaeelrsrlrqnvealkerLaPyaee 126
                  l  + + v e +++ + ++v +l  +L +++++
  MMETSP0890-20130614|39039_1  12 LTLKAKEVSENVDDEINDHVTSLFNQLSSISNK 44 
                  444555555555555555555555555444433 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.84
                  ---HHHHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH----------X CS
   PF01442.13  32 LaketeelreelqkeleevrarlepyrdevkqqlgqnleelrqrlkpyaeelreqlnrdveelreqLapvaeelrsrlrqnvealkerLaPyaeelrqk 130
                  La e+e +  ++ + l    a+l+   d + + l +   ++  + + y+ ++ ++++++ +e++++L++  + + ++l++n+++l+++ +  ++ ++++
  MMETSP0890-20130614|39039_1 299 LAHESEVASVSVSTKLHSTAAELKLSGDTLAKSLRELSMKYADERNGYTSDIISNIENESNEANQKLQTALKKASDTLEDNTKNLQKKIEVSSQAIKTT 397
                  555555555555555555555555555555555555555555555555555555666666666666666666666666666666666655555444444 PP

>> PF08703.5  PLC-beta C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.5    0.0011         5      82     163 ..     143     225 ..     120     247 .. 0.83
   2 ?    8.2   0.4   0.00035       1.6      48      78 ..     359     389 ..     321     410 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0011
    PF08703.5  82 ekIq.eaktkekakkerektEinrshiqEvVqsikrLeeaqkrrqekLeekqkeilqqieeeepklqaeltaeyeaklkrLpe 163
                  ++I  ++ ++e +   +  +E  +  i+E+  +ik  ee+++  +    +  k  ++ +e  + +l+++++  +ea+++++++
  MMETSP0890-20130614|39039_1 143 NHIRtTKAKSEVTSSLQYIEEETNAAIDESAAAIKLREETLECERANFFALCKSQREWLESVQCQLRQAVDMHFEARMREIES 225
                  45552333334444445566778999***********************9999999999*******************98764 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00035
    PF08703.5  48 elarekqaaqlKkLKeisekekKelkkkldr 78 
                  + a +k ++ lKk  ++ e ++K+l+kk++ 
  MMETSP0890-20130614|39039_1 359 NEANQKLQTALKKASDTLEDNTKNLQKKIEV 389
                  4466677788999999999999999999874 PP

>> PF10173.4  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.6     0.002       9.1      20      64 ..      97     141 ..      57     237 .. 0.76
   2 ?    3.8   0.2    0.0087        40      36      85 ..     349     398 ..     305     436 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.002
    PF10173.4  20 esssaeeslskeskkesledkitkkaaktwaklekaekgwkkkvv 64 
                  +++++++sl+ + ++  ++++i +k++++ ++l +a++++kk ++
  MMETSP0890-20130614|39039_1  97 SEKAQASSLNAAANIDDIQNQINDKTTSLSTRLHSAQETVKKSIT 141
                  222333667777777777777777777777777777777777665 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0087
    PF10173.4  36 sledkitkkaaktwaklekaekgwkkkvvslgeklldripyeEnaLksip 85 
                   ++  i + ++++ +kl++a k+   ++ +  ++l ++i+ + +a+k+  
  MMETSP0890-20130614|39039_1 349 DIISNIENESNEANQKLQTALKKASDTLEDNTKNLQKKIEVSSQAIKTTV 398
                  44444444444444444444444444444444444444444444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1888  (0.138092); expected 273.4 (0.02)
Passed bias filter:                      331  (0.0242101); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:01.28
# Mc/sec: 896.76
//
Query:       MMETSP0890-20130614|39046_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-14   51.8   0.0    6.6e-14   51.5   0.0    1.1  1  PF00156.22 Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.056   12.4   0.3       0.14   11.1   0.2    1.8  1  PF11382.3  Protein of unknown function (DUF3186)


Domain annotation for each model (and alignments):
>> PF00156.22  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   9.7e-18   6.6e-14      41     124 ..       2      93 ..       1      94 [. 0.96

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 9.7e-18
                  -HHHHHHHHHHHHHH-----SS-S........EE---------EEEEES-GGGGTTSEEEEEEEEE----HHHH---TTTT----EEEEEEE CS
   PF00156.22  41 latelaraLglpldlvrvrkssap........assetsrkreaailesrpeedlkgkrvliVDDvlatGgTlraaielLkeagakevgvavl 124
                  l++ +a++L lp  +v+ ++ +++         +s+t+++++a +l++r  ++l gkrv  VDDv+++G +  aa++lL++aga++v +a +
  MMETSP0890-20130614|39046_1   2 LGATVAKELQLPRQYVLQKTMKTHlsdaliepLNSITTKNDQALRLDRRWLSELNGKRVAFVDDVISSGSSCAAALRLLRAAGAEVVAIAAI 93 
                  57889***************9999*****************************************************************986 PP

>> PF11382.3  Protein of unknown function (DUF3186)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.1e-05      0.14      80     118 ..      54      92 ..       2     107 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
    PF11382.3  80 rLtgkkValvelpdaddddvdavkelLekAGatvvgrit 118
                  +L+gk+Va v    ++ +  +a  +lL++AGa+vv+   
  MMETSP0890-20130614|39046_1  54 ELNGKRVAFVDDVISSGSSCAAALRLLRAAGAEVVAIAA 92 
                  69*********999********************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.73
# Mc/sec: 443.16
//
Query:       MMETSP0890-20130614|39049_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                       97  (0.00709479); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.33s 00:00:00.60 Elapsed: 00:00:00.49
# Mc/sec: 273.87
//
Query:       MMETSP0890-20130614|39045_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   14.5   0.1      0.015   14.0   0.1    1.2  1  PF03036.11 Perilipin family
      0.034   13.9   0.2      0.093   12.4   0.0    1.7  1  PF08989.5  Domain of unknown function (DUF1896)


Domain annotation for each model (and alignments):
>> PF03036.11  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.2e-06     0.015     210     280 ..      16      86 ..       3      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.2e-06
                  HHTT-EEEE-----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHH.HH----------------- CS
   PF03036.11 210 rqkqsyfvrlgsLsaklrrrayqqslaklrqakkksqeaisqLtstleLiel.arkgvsqklkeaqeklkel 280
                   +++  +++l +++++    ++q++ + lrq+ ++ qe+++++  tl Li + ar   +q+++e  +   ++
  MMETSP0890-20130614|39045_1  16 NSAPAQLQHLECIAKRAHTALLQHTQC-LRQISQRKQELAHEICATLGLILFlARAKYHQDITEDFDHYFNM 86 
                  4578899*****************965.9********************97537888889998877665555 PP

>> PF08989.5  Domain of unknown function (DUF1896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.093      12      54 ..       7      49 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
    PF08989.5 12 rlkLlsyLkeshpelagdeefireRadeAaeayeeavreglsv 54
                 + ++++yLk+s p + +  e i++Ra +A+ ++++ +r+ +  
  MMETSP0890-20130614|39045_1  7 QKQIEFYLKNSAPAQLQHLECIAKRAHTALLQHTQCLRQISQR 49
                 56789****************************9999986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       726  (0.0531012); expected 273.4 (0.02)
Passed bias filter:                      534  (0.0390579); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.40s 00:00:00.89 Elapsed: 00:00:01.28
# Mc/sec: 308.91
//
Query:       MMETSP0890-20130614|39062_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-23   82.4   0.2    8.2e-23   80.1   0.0    2.2  3  PF01480.12 PWI domain
    4.5e-10   40.0   0.0    8.6e-10   39.1   0.0    1.5  1  PF00639.16 PPIC-type PPIASE domain
     0.0011   19.0   0.0     0.0024   17.9   0.0    1.6  1  PF13616.1  PPIC-type PPIASE domain
  ------ inclusion threshold ------
      0.016   15.1   1.2      0.026   14.4   0.8    1.3  1  PF11081.3  Protein of unknown function (DUF2890)


Domain annotation for each model (and alignments):
>> PF01480.12  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   2.4e-26   8.2e-23       2      76 ..      39     118 ..      38     119 .. 0.93
   2 ?   -1.1   0.0      0.54   1.8e+03       7      25 ..     124     142 ..     122     145 .. 0.87
   3 ?   -3.6   0.0       3.3   1.1e+04      19      28 ..     174     183 ..     172     190 .. 0.77

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 2.4e-26
   PF01480.12   2 evlkpWIskkvtelLgfeDdividyilsqLekks.....eekeldpkklqinltgfLeknaekFvkeLWelllsaqesee 76 
                  +v++ W+++++t+lLgfeD++vi ++ + L++       +  + d k+lq +ltgfL k+a  Fv+eLW ll+ aq+ + 
  MMETSP0890-20130614|39062_1  39 KVIENWVKERITQLLGFEDEVVIGLVTNVLQQTTdaytgHPIKVDAKELQVQLTGFLAKDAGPFVSELWALLIDAQDAPY 118
                  799****************************8889988777788********************************9876 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.54
   PF01480.12   7 WIskkvtelLgfeDdivid 25 
                  ++++k  elL++  +iv +
  MMETSP0890-20130614|39062_1 124 FVERKKRELLPVTTEIVQE 142
                  8999999*****9999976 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3.3
   PF01480.12  19 eDdividyil 28 
                  +D+iv+  il
  MMETSP0890-20130614|39062_1 174 DDKIVVRHIL 183
                  7889888775 PP

>> PF00639.16  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   2.5e-13   8.6e-10       1      77 [.     181     270 ..     181     271 .] 0.93

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 2.5e-13
   PF00639.16   1 HIliktke...........seeekeeakakaeelleqlksge...dtFaelakeySddkssakngGdLgwfergqlppefekavfslkege 77 
                  HIlik+ e            + ++ +a+ ++e+++++l       ++++  a++ S d++sa +gG +  f+rg+l+++fe+a+fsl++g 
  MMETSP0890-20130614|39062_1 181 HILIKHAEsrrpsswrekcITLSRVDAYSELETIRKKLLVASnleEALSSYATQRS-DCPSAVKGGLIAAFRRGDLDRTFEQAAFSLRPGV 270
                  ******99*********99999***************98766555779999*****.******************************9985 PP

>> PF13616.1  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     7e-07    0.0024      11      96 ..     172     269 ..     153     271 .] 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7e-07
    PF13616.1  11 qlpdsvkvshIlvdskg..............kasrtkeeakakAdsilkalkkgadFaalAkkySdDksskangGdlgwftakgqmvkefedalfklkvg 96 
                  +  d++ v+hIl+++++              +  +   e ++  +++l a +  +  +  A + S D  s+ +gG +  f  +g+++ +fe+a+f+l  g
  MMETSP0890-20130614|39062_1 172 KQDDKIVVRHILIKHAEsrrpsswrekcitlSRVDAYSELETIRKKLLVASNLEEALSSYATQRS-DCPSAVKGGLIAAFR-RGDLDRTFEQAAFSLRPG 269
                  3556***********99*******99955443333444444445555555555556666677777.4446***********.**************9887 PP

>> PF11081.3  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.8   7.7e-06     0.026      78     123 ..     145     197 ..     128     202 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.7e-06
    PF11081.3  78 ksapprpaa.rrpsrRWdetgraaapttaakkk......alraaarepastre 123
                     p++ +  ++ + RWd++  ++ap+++  k        ++a++r+p+s+re
  MMETSP0890-20130614|39062_1 145 SPNPEEDSCkKKRQCRWDTQDASPAPQKQDDKIvvrhilIKHAESRRPSSWRE 197
                  33333333368889***************99999999888889999999*998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.95
# Mc/sec: 683.59
//
Query:       MMETSP0890-20130614|39064_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-23   80.7   0.3    8.8e-23   80.7   0.2    1.0  1  PF00390.14 Malic enzyme, N-terminal domain


Domain annotation for each model (and alignments):
>> PF00390.14  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.2   6.4e-27   8.8e-23      71     125 ..       1      55 [.       1      56 [] 0.97

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 6.4e-27
                  EEE----------------TTT---HHHHHHH---EGGGEEEEEEE--...HHHH CS
   PF00390.14  71 vvtdgeriLGlGdlGvagvgimvGKlaLytalagidPekvlpvvldvgtnneell 125
                  v+tdg+riLG+Gd+G ++++i+vGKlaLy a++gi P++vlp+v+d+gt+n +l+
  MMETSP0890-20130614|39064_1   1 VITDGSRILGIGDQGSNAMPIPVGKLALYCAAGGIAPHRVLPIVIDAGTDNITLR 55 
                  8**************************************************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        93  (0.00680222); expected 273.4 (0.02)
Passed bias filter:                       91  (0.00665594); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.72
# Mc/sec: 186.38
//
Query:       MMETSP0890-20130614|39060_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-18   66.2   0.0    3.7e-18   65.7   0.0    1.2  1  PF13883.1 Pyridoxamine 5'-phosphate oxidase
     0.0059   16.6   0.2      0.013   15.5   0.1    1.6  1  PF10615.4 Protein of unknown function (DUF2470)


Domain annotation for each model (and alignments):
>> PF13883.1  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   5.4e-22   3.7e-18      21     170 .]      55     204 ..      35     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 5.4e-22
    PF13883.1  21 tlstisttkdiegapfanvvsisdgaaddstGnpylllvdisstvqniqansk.asltiseaqkpeckkkkvdpesp....tcaRvsltGklekvesdekklaekcflsrHpdakkWlpgnsihkshfvkLeveeiylvggFGg.aayidaeeYls 170
                  +lst s+  +  ++pf+++  +      d+ G p+lll     + +ni+++s+ +s+++++++  +   ++ + +s+    +c+R++++G+l+++++++++++   f+  H  a+  l+++s  ++ +++Le++++++vggFG  a++id++eYl+
  MMETSP0890-20130614|39060_1  55 ALSTNSR--NEVDVPFTSFADYV----LDEFGRPVLLLKSDAEHSKNIAQKSNlVSVLLQARRMSRGGTSDGEYSSYaaaeRCPRITISGELNPMSAEDASFVSGNFILEHAYAEPLLSEKSNQDFRLWRLEPSSVFYVGGFGVkAQWIDPSEYLK 204
                  3444444..67788888888876....899******************9998868888888875444333222222244559*************************************************************87899******85 PP

>> PF10615.4  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.9e-06     0.013      14      82 ..     218     291 ..     206     292 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.9e-06
    PF10615.4  14 isHMNeD.Hadalalyaqhyggvskaesarmtdidleglelev...gdk.ktlrvpFepplessedvrqrlvam 82 
                  +  +N+  H  +l++  +h+ ++++a +  ++ +d+ g++++v   g+  +++r+++  p++s+ed++++l ++
  MMETSP0890-20130614|39060_1 218 VHELNDEkHSADLEAATKHVLDIHDALKISVVHLDKLGVDFRVerkGNIvEEYRIKYRIPATSVEDAKSELNKL 291
                  44466544***********************************98533369*****************999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:01.83
# Mc/sec: 421.65
//
Query:       MMETSP0890-20130614|39059_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   15.4   1.8        1.3    8.4   0.0    3.1  3  PF06552.7 Plant specific mitochondrial import receptor subunit TOM20
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.024   14.1   0.0    1.5  1  PF08665.7 PglZ domain
      0.041   13.4   1.3       0.15   11.6   0.3    2.4  2  PF13414.1 TPR repeat
        2.2    9.0  11.5        4.8    7.9   0.0    4.7  5  PF13428.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF06552.7  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0074        25      91     122 ..     188     219 ..     174     226 .. 0.90
   2 !    8.4   0.0   0.00037       1.3      86     139 ..     233     295 ..     226     312 .. 0.72
   3 ?   -0.2   0.1      0.16   5.6e+02      78     114 ..     361     399 ..     350     429 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0074
                  HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH CS
    PF06552.7  91 eakenfdkatqffqqavdedPdndlyrkslel 122
                   a++ f+ka  ++++  + dP++  yr  l+l
  MMETSP0890-20130614|39059_1 188 AAQNDFEKAETIYNIFYELDPESLSYRTKLKL 219
                  58999**********************98875 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00037
                  ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH.........HHTHHHHHHHHHH---- CS
    PF06552.7  86 tpdeeeakenfdkatqffqqavdedPdndlyrkslel.........aakaPelhtelhkqgll 139
                   +d +     f+ a+ +f++a ++ P++d y  ++ +         a+ka elh +++++g++
  MMETSP0890-20130614|39059_1 233 RKDINGHDASFEAAMFIFDTALKNAPESDEYTWTVAVralalapnfASKALELHQSAKRHGIG 295
                  5666777789********************987664411111222256777788777777765 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.16
                  HHHHHHHH---HHHHHH..HHHHHHHHHHHHHHH-TT-H CS
    PF06552.7  78 aytsfafltpdeeeake..nfdkatqffqqavdedPdnd 114
                  ++t+  f ++de e ++  +f   + +f ++v++ P   
  MMETSP0890-20130614|39059_1 361 SHTALNFSAHDEIEHHDfdKFLSPSTIFHKTVEQSPLAL 399
                  588889999998876531145557889999999999655 PP

>> PF08665.7  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     7e-06     0.024      10      63 ..     320     371 ..     317     421 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7e-06
    PF08665.7  10 alryeaaeelkelLnkesraeaeleamlavLPtlTqlgraaLlpgkkllykeks 63 
                  al+++ a+e++e  n  +  + ++++  ++LP + +  r+aL+++++l+++ ++
  MMETSP0890-20130614|39059_1 320 ALSLDLAREVAEATN--DFDNQRITELHTLLPDVFSWCRQALFSHTALNFSAHD 371
                  789999999999998..555677777*********************9998554 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   4.3e-05      0.15      13      69 .]     187     258 ..     185     258 .. 0.79
   2 ?    1.2   0.1     0.074   2.5e+02      19      38 ..     243     262 ..     222     289 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.3e-05
    PF13414.1  13 lfkegdydeAieayekAleldpnnae.........lyynlAlaylklgk......dyeeAledyekAleldP 69 
                  l  ++d+++A+  y+  +eldp++ +         + +++A  +l + +       +e+A+  ++ Al+ +P
  MMETSP0890-20130614|39059_1 187 LAAQNDFEKAETIYNIFYELDPESLSyrtklklfeARCRRARNLLLRKDinghdaSFEAAMFIFDTALKNAP 258
                  6789*******************9888888888887777777777765332433458899999999999877 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.074
    PF13414.1  19 ydeAieayekAleldpnnae 38 
                  ++ A   ++ Al+  p++ e
  MMETSP0890-20130614|39059_1 243 FEAAMFIFDTALKNAPESDE 262
                  67777888888888777655 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1         4   1.4e+04      20      34 ..       7      21 ..       4      33 .. 0.48
   2 ?    7.9   0.0    0.0014       4.8      11      39 ..     187     215 ..     182     218 .. 0.90
   3 ?    4.4   0.1     0.019        66      16      37 ..     242     263 ..     220     275 .. 0.69
   4 ?    1.1   0.3      0.22   7.4e+02       8      27 ..     306     325 ..     298     337 .. 0.79
   5 ?   -2.8   0.0         4   1.4e+04      25      38 ..     445     457 ..     432     459 .. 0.53

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4
    PF13428.1 20 AiallrralalaPdd 34
                 A++++ +   l+P++
  MMETSP0890-20130614|39059_1  7 AAQYAAASSVLDPGS 21
                 444444444455554 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0014
    PF13428.1  11 llalGdpdeAiallrralalaPddaeall 39 
                  l+a++d+++A+  ++   +l+P+++ +++
  MMETSP0890-20130614|39059_1 187 LAAQNDFEKAETIYNIFYELDPESLSYRT 215
                  5799*******************999886 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.019
    PF13428.1  16 dpdeAiallrralalaPddaea 37 
                   +++A+  ++ al+ aP+++e+
  MMETSP0890-20130614|39059_1 242 SFEAAMFIFDTALKNAPESDEY 263
                  3899*************99773 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.22
    PF13428.1   8 arallalGdpdeAiallrra 27 
                  + all++ + d+A+al  ++
  MMETSP0890-20130614|39059_1 306 VSALLRADEIDAALALSLDL 325
                  67999999999999986665 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 4
    PF13428.1  25 rralalaPddaeal 38 
                  + a a+ Pd  ++l
  MMETSP0890-20130614|39059_1 445 Q-AEARWPDAFDLL 457
                  2.345667665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.94
# Mc/sec: 1190.53
//
Query:       MMETSP0890-20130614|39069_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25   11.2   2.4       0.28   11.0   0.3    2.1  2  PF13490.1 Putative zinc-finger


Domain annotation for each model (and alignments):
>> PF13490.1  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.73     1e+04       5      18 ..      50      63 ..      49      66 .. 0.65
   2 ?   11.0   0.3   2.1e-05      0.28      13      29 ..      82      99 ..      81     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.73
    PF13490.1  5 rellsaYlDGeLsp 18
                 re+  a+ DG  s+
  MMETSP0890-20130614|39069_1 50 REAAEALRDGARSR 63
                 56666777777665 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 2.1e-05
    PF13490.1 13 DGeLspee.rarleaHLa 29
                  GeL+p+e +a+leaHL+
  MMETSP0890-20130614|39069_1 82 AGELTPSElAAALEAHLE 99
                 69******77*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.39s 00:00:00.97 Elapsed: 00:00:01.06
# Mc/sec: 660.13
//
Query:       MMETSP0890-20130614|39074_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      138  (0.0100936); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.36s 00:00:00.64 Elapsed: 00:00:00.71
# Mc/sec: 108.00
//
Query:       MMETSP0890-20130614|39078_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       431  (0.0315243); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.64
# Mc/sec: 1153.25
//
Query:       MMETSP0890-20130614|39084_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 602.33
//
Query:       MMETSP0890-20130614|39090_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       599  (0.0438122); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.42s 00:00:00.92 Elapsed: 00:00:00.77
# Mc/sec: 634.88
//
Query:       MMETSP0890-20130614|39094_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|39124_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.073   12.3   0.0      0.095   11.9   0.0    1.2  1  PF00033.14 Cytochrome b(N-terminal)/b6/petB


Domain annotation for each model (and alignments):
>> PF00033.14  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     7e-06     0.095      51      72 ..      58      79 ..      45      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7e-06
   PF00033.14 51 flaGllllallllrllwllass 72
                 f++G+lll+++++ ++w+++s 
  MMETSP0890-20130614|39124_1 58 FWIGILLLIFVIALIIWGIMSD 79
                 8*******************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       904  (0.0661205); expected 273.4 (0.02)
Passed bias filter:                      819  (0.0599035); expected 273.4 (0.02)
Passed Vit filter:                       114  (0.00833821); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.47s 00:00:00.87 Elapsed: 00:00:00.71
# Mc/sec: 334.14
//
Query:       MMETSP0890-20130614|39134_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       476  (0.0348157); expected 273.4 (0.02)
Passed bias filter:                      453  (0.0331334); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.80
# Mc/sec: 164.75
//
Query:       MMETSP0890-20130614|39125_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   15.0   1.4      0.029   14.1   1.0    1.6  1  PF13671.1 AAA domain


Domain annotation for each model (and alignments):
>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.0   2.1e-06     0.029      37      96 ..     283     341 ..     243     393 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.1e-06
    PF13671.1  37 lfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatnlsreerarfvklakrlg 96 
                   + + ++++++    ++++++ +++ ark+l++ r  ++da  + r+er+r+v++a++  
  MMETSP0890-20130614|39125_1 283 RR-SSKKHEKFNKPQEESTLAYQEEAARKRLEDERKKLLDAATAVRRERDRLVAAARSTR 341
                  33.233444455556667777779********************************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       838  (0.0612932); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.39s 00:00:01.14 Elapsed: 00:00:00.98
# Mc/sec: 1017.23
//
Query:       MMETSP0890-20130614|39140_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-42  143.5   0.0    8.5e-42  143.3   0.0    1.0  1  PF03949.10 Malic enzyme, NAD binding domain


Domain annotation for each model (and alignments):
>> PF03949.10  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.0   6.2e-46   8.5e-42      71     255 .]       2     179 ..       1     179 [. 0.97

  Alignments for each domain:
  == domain 1    score: 143.3 bits;  conditional E-value: 6.2e-46
                  EBTTTSSHSTTCCCCCBCS-SS--S-SHHHHHHHH..SEEEE-SS----S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHCT--EEEEEB-.....EE...-EESSSB--GGGT----HHHHCCTTBSS--HHHHHHHHHHHHHT-SHH...............HHCTTBSS--GGGHHHHHHHHHHHHHHHHH CS
   PF03949.10  71 ltedredlneekkelakktnevkkkttleevvkkakpdvliGlsgvagvfteeivkemaesterPiifalsNPtpkaEitpeealeatagkvlvatGspfkpvelngrsdvpnQvNNvlvFPgiglGaldvrakkitdemllaaaealAelveee...............eleegkilPklsdirevslkvaaaVakaav 255
                  ++++r+ +n +k+e+ + +n     +tl+++  +a  dv++Gls v+g+++++++k+ma    rPi++a++NP+p  Ei + +a++a+++ + +atG          rsd+pnQvNNvl FP+i++Gald+ra+ i+d m++aa  alAel+++                + + ++i+Pk+ d+r v++   +aVakaa+
  MMETSP0890-20130614|39140_1   2 IYDGRSGINGYKREFSQPANTKI--RTLADAFIDA--DVFVGLS-VGGLVSQQMLKSMAP---RPIVLAMANPDP--EISYPDAIAARDDII-MATG----------RSDFPNQVNNVLGFPFIFRGALDCRASCINDAMKIAATMALAELAKAGnvpqailnaydlpslDYGPDYIIPKPMDPR-VLIYESVAVAKAAM 179
                  78899999*********999954..8*********..*******.***************...************..**********99988.6***..........***********************************************99**************99*************.***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 775.07
//
Query:       MMETSP0890-20130614|39136_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       283  (0.0206992); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.69
# Mc/sec: 781.42
//
Query:       MMETSP0890-20130614|39135_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-30  105.0   0.0    4.7e-30  104.5   0.0    1.1  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    2.5e-06   27.0   0.0      6e-06   25.8   0.0    1.7  1  PF13847.1  Methyltransferase domain
    2.9e-06   27.7   0.0    6.2e-06   26.6   0.0    1.5  1  PF12847.2  Methyltransferase domain
    6.1e-06   25.3   0.0    1.3e-05   24.2   0.0    1.4  1  PF00398.15 Ribosomal RNA adenine dimethylase
    0.00023   21.3   0.0    0.00047   20.3   0.0    1.6  1  PF13649.1  Methyltransferase domain
     0.0011   19.3   0.0     0.0051   17.1   0.0    2.1  1  PF08241.7  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.036   13.9   0.0    1.8  1  PF13659.1  Methyltransferase domain
      0.023   13.9   0.0      0.037   13.2   0.0    1.3  1  PF08123.8  Histone methylation protein DOT1
       0.07   12.0   0.0       0.11   11.4   0.0    1.3  1  PF02353.15 Mycolic acid cyclopropane synthetase
      0.079   12.2   0.0       0.16   11.2   0.0    1.5  1  PF05175.9  Methyltransferase small domain
       0.33   10.7  16.0       0.55   10.0  11.1    1.4  1  PF01753.13 MYND finger


Domain annotation for each model (and alignments):
>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   3.8e-33   4.7e-30       2     206 ..      57     278 ..      56     282 .. 0.89

  Alignments for each domain:
  == domain 1    score: 104.5 bits;  conditional E-value: 3.8e-33
                  HHHHHHHHHHH--.---HHHHHHHHHS-GGGGS-G..GGGGGTTSSS-EE-----EE--HHHHHHHHHHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--............SEEEE------..--GGG--BSEEEESSB-SS--HHHHHTB-----EEEEE-..--SEEEEEEEE--.--EEEEE.EEEE---B-- CS
   PF01135.14   2 kkealieelkkkgviksdkvaealeevdReefvpe..sfkekaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle............nvivvvgDGrk..GyeekaPYdaihvgaaapeiPealidQLkeGGrlvvPvge.eeeQvlklvdkkadgkvvikk.leevrfvplt 206
                  +++a++e+l++ g i+s++v++a+ ++dR+ f++     ++ aY d p+++      Sap++ a +le l+l++g++ L++GsGsGyl+a+ ar++g+++  v+ie    +v++a+ +  + + +            nv++++gD +     e+   +++i+vga+a    + l++ Lke G+lv P ++ ++ Q+l  v+ ++ g  +i+  + +v f  l+
  MMETSP0890-20130614|39135_1  57 NNSAMVESLEALGSIRSEQVLDAFTQTDRAYFLEPyaRIEDGAYADLPIHVA-PLHQSAPSVYASVLEALQLEHGDSFLNIGSGSGYLSAIAARIIGPEAYHVGIESRLPMVQAARTKFSRVGNDsfwpemadklkkNVTFIHGDCYSldTSENSFKFNKIYVGAGARLSARRLFRLLKEDGILVGPFENeDQGQNLIIVRARGGGAYSITPgESHVNFAWLV 278
                  6899****************************9861134569*******886.4678******************************************************************999*******************9863255666689*******************************9889999999998887777766514456666555 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.8e-09     6e-06       4      75 ..     130     212 ..     127     241 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.8e-09
    PF13847.1   4 gikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAke............raqklgfenveFiqgdieeleklleesfD 75 
                  g ++l +G+G+Gyl+ ++a+ +gp+a  vGi+    +++ A++            +++++  +nv+Fi+gd  +l+++ e+sf 
  MMETSP0890-20130614|39135_1 130 GDSFLNIGSGSGYLSAIAARIIGPEAYHVGIESRLPMVQAARTkfsrvgndsfwpEMADKLKKNVTFIHGDCYSLDTS-ENSFK 212
                  678999*************************************999999999999666666669***********976.44443 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     5e-09   6.2e-06       2     108 ..     130     240 ..     129     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 5e-09
    PF12847.2   2 gkrilDlGcGtGslslelar.lrpgakvvgvDpseeslelarena...........ksldleeriellqgda.keelsller...fDavllkgltldallaldeprrvlealpkllkpggrlv 108
                  g++ l +G+G+G+ls+ +ar   p+a  vg++ +  +++ ar +             + +l  ++++++gd+ +   +  e+   f  + ++   + +l a        ++l +llk +g+lv
  MMETSP0890-20130614|39135_1 130 GDSFLNIGSGSGYLSAIAARiIGPEAYHVGIESRLPMVQAARTKFsrvgndsfwpeMADKLKKNVTFIHGDCySL--DTSENsfkFNKIYVGA--GARLSA--------RRLFRLLKEDGILV 240
                  67899***************9999******************777777777777764477999*********633..3333344699999966..333333........58999999999987 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     1e-08   1.3e-05      16     100 ..     115     212 ..     113     226 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1e-08
   PF00398.15  16 kkvineIldklnlqekdtvlEigpGkGalTeeLakra...kqvvalEidsklvkrlqkkla..............kdenvevvhqDflkfstpedviheefl 100
                  ++v+ ++l++l+l+  d  l ig+G+G l+++ a++      +v +E++  +v+  ++k++               ++nv+ +h+D +  +t e    + f+
  MMETSP0890-20130614|39135_1 115 PSVYASVLEALQLEHGDSFLNIGSGSGYLSAIAARIIgpeAYHVGIESRLPMVQAARTKFSrvgndsfwpemadkLKKNVTFIHGDCYSLDTSE----NSFK 212
                  6899*********************************99999*******************99999999999998899***********99999....5554 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.8e-07   0.00047       1      73 [.     133     216 ..     133     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.8e-07
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlss...kgl..........kvkfvqadaralpfeegefdlvvc 73 
                  +l++G+GsG   + ++r    gpe++ +g++ +  ++++a++++s+   +++          +v+f+++d+ +l+++e++f++  +
  MMETSP0890-20130614|39135_1 133 FLNIGSGSGYLSAIAARII--GPEAYHVGIESRLPMVQAARTKFSRvgnDSFwpemadklkkNVTFIHGDCYSLDTSENSFKFNKI 216
                  59*******9999999887..999*****************888876653336667788889*************99996654333 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.1e-06    0.0051       1      93 [.     134     239 ..     134     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.1e-06
    PF08241.7   1 LdvGcGtglllealaer..paarvtgvDlseemlatakerlkeegle...............lvvadaeelpfednsfDvvvssevlehledpekalkeiaRvLkpgGll 93 
                  L++G+G+g+l++  a+   p+a  +g++    m++ a+++ ++ g +               ++++d+++l+  +nsf +      +   +  +   + + R+Lk++G+l
  MMETSP0890-20130614|39135_1 134 LNIGSGSGYLSAIAARIigPEAYHVGIESRLPMVQAARTKFSRVGNDsfwpemadklkknvtFIHGDCYSLDTSENSFKFN----KIYVGAGARLSARRLFRLLKEDGIL 239
                  78*******************************************99******************************9653....2222344555566666666666666 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.9e-05     0.036       1      73 [.     130     213 ..     130     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.9e-05
    PF13659.1   1 gdrvldpgcGsGtfllaalell..aalllgvEldpraaalaarnlar...........aglaervrvrqgdlrdlaellragsfdl 73 
                  gd+ l +g+GsG++ + a++    +a  +g+E     +++a+++++r            +l+++v++++gd   l+  ++++sf +
  MMETSP0890-20130614|39135_1 130 GDSFLNIGSGSGYLSAIAARIIgpEAYHVGIESRLPMVQAARTKFSRvgndsfwpemaDKLKKNVTFIHGDCYSLD--TSENSFKF 213
                  578899*************997799*****************9999955554444443344999********9998..77888764 PP

>> PF08123.8  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05     0.037      28      75 ..     115     163 ..     112     210 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3e-05
                  HHHHHHHHHHTT-----EEEEE------HHHHHHHH----.EEE--B-- CS
    PF08123.8  28 peflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgck.lsvGvEim 75 
                  p++ ++vl+ ++l++ d F+ +GSG G +   aa  +g +  +vG+E  
  MMETSP0890-20130614|39135_1 115 PSVYASVLEALQLEHGDSFLNIGSGSGYLSAIAARIIGPEaYHVGIESR 163
                  677899****************************999876258999964 PP

>> PF02353.15  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     9e-05      0.11      51      82 ..     118     149 ..      87     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9e-05
                  HHHHHHTT------EEEE-------HHHHHHH CS
   PF02353.15  51 ldlileklelkpGmtlLdiGcGWGslvrrave 82 
                  +  +le l+l++G+  L+iG G G+l   a++
  MMETSP0890-20130614|39135_1 118 YASVLEALQLEHGDSFLNIGSGSGYLSAIAAR 149
                  66789*********************999887 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.16      24      78 ..     122     177 ..     117     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
                  HHHS-TT------B-------HHHHHHHH.-TT----EEESBHHHHHHHHHHHHH- CS
    PF05175.9  24 letlpkklagkvlDlGcGaGvlgaalake.spelevtlvDinarAvesakanlean 78 
                  le+l+ ++++++l++G+G G+l+a +a+  +pe+  + ++     v++a++++++ 
  MMETSP0890-20130614|39135_1 122 LEALQLEHGDSFLNIGSGSGYLSAIAARIiGPEAYHVGIESRLPMVQAARTKFSRV 177
                  788999999***************99986245555666666666677666666655 PP

>> PF01753.13  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.1   0.00045      0.55       1      36 [.     375     412 ..     375     417 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00045
                  -TTT--...B----EE----S--EESSHHHHHHHHHHH CS
   PF01753.13   1 CavCgk..aealkllrCsgCksvkYCskeCQradwkeH 36 
                  C  Cg+  ++ ++  +C +C  +++Cs++CQ+a+   H
  MMETSP0890-20130614|39135_1 375 CTFCGNepSPGKTYAKCLRCCDCRFCSQQCQKAAYLLH 412
                  999***998888999*****************998666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       621  (0.0454213); expected 273.4 (0.02)
Passed bias filter:                      341  (0.0249415); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.88u 0.38s 00:00:01.26 Elapsed: 00:00:00.83
# Mc/sec: 1478.23
//
Query:       MMETSP0890-20130614|39145_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-50  169.4   0.3    1.3e-49  168.7   0.0    1.4  2  PF00696.23 Amino acid kinase family
    7.7e-12   44.4   2.7    9.6e-07   28.1   0.2    2.5  2  PF13840.1  Family description
    1.2e-06   27.7   4.0    0.00061   19.1   0.0    2.7  3  PF01842.20 ACT domain
  ------ inclusion threshold ------
       0.02   14.6   0.0         10    5.9   0.0    2.6  2  PF09413.5  Domain of unknown function (DUF2007)


Domain annotation for each model (and alignments):
>> PF00696.23  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   0.0   3.9e-53   1.3e-49       2     241 .]      22     300 ..      21     300 .. 0.86
   2 ?   -3.6   0.0       1.7   5.7e+03      88     101 ..     409     422 ..     377     443 .. 0.51

  Alignments for each domain:
  == domain 1    score: 168.7 bits;  conditional E-value: 3.9e-53
                  EEEEE----TSTTTTC.HHHHHHHHHHHCTTT-EEEEE-----HHHHHHHC..EEE....E.......EE..TT...HHHHHHHH.........HHHH..............---TTCHHHHHHCCCHHCEEE-CCC--B-B---........................---HHHHHHHC.T-EEEE---ECCES-------ECS-S--HHHHHHHHCT-SEEEEE-S----BSS-SSS-TTSSB-SEEECCCHHHHHH..S...---CCCHHHHHCCHHHST-EEEEE- CS
   PF00696.23   2 riViKlGGssltdkge.lkriaeqiakleedgkklvvVsGggsftdklaea..lgvekggka....gerstklktglvatrqava.........slnq..............dglldevvsagerlsaplvalllkaggisavqrdae....................snsvealkelleegkvpvltGfigedddgetttlgrgssDtlaallAaalgAdklilltdVdGVytadPkkvpdakllpeisvdeaeelsiasgdvtgGmkvkhpaalkaareggipvvItn 241
                  r+V+K+GGssl++  + + ++ae i+  +e+  +++vVs++g++t++l++a   +v +g+++    ++ + +  ++l    +  +         +                 ++++d ++s+gerls++++a++l+++gi+a ++da                     s+ ++ l   +++++v v+tGfig+d+dg++ tlgrg+sD +a++lAaa+g d++ +++dVdG+++adP+ vp+a+++p  +++ea el+      ++G+  +hp  +++a + ++pv+++n
  MMETSP0890-20130614|39145_1  22 RVVMKFGGSSLASG-KrMCQVAELIKSQREHVDPVIVVSAMGKTTNALLKAgeKAVDEGQVRideiRTLHLDTLEELDLPGA--TgteirgllrD--LealldgvsmvreltPRTRDLLASFGERLSCRVLAAQLNQIGIPAIAKDAWtigmrtigrfgdavvdedcySDLKSSLSPIIQRREVAVVTGFIGKDADGRIVTLGRGGSDLTATALAAACGLDEVQVWKDVDGMMSADPRLVPHAVPVPFATYEEAAELA------YFGAQLLHPVSMQPALKANVPVRVKN 300
                  89**********99.77*********777776666****************5444444444377553333333333333333..24455554442..0556667777779999********************************999****************99998889999999999*****************************************************************************......***************999******98 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.7
                  TCHHHHHHCCCHHC CS
   PF00696.23  88 devvsagerlsapl 101
                  + v++++ ++s+ +
  MMETSP0890-20130614|39145_1 409 SLVGDNMKDHSTAV 422
                  23333333333333 PP

>> PF13840.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.5e-06    0.0052       3      46 ..     331     374 ..     329     381 .. 0.87
   2 !   28.1   0.2   2.8e-10   9.6e-07       5      65 .]     404     467 ..     400     467 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.5e-06
                  ----EEEEE---.---S----HHHHHHHHHT-----EEE-.---- CS
    PF13840.1   3 edgwiklsvvgsglpfdvtGivakiaspLaeagIsifqiS.tytt 46 
                  ++++  + vv++++ +  +G++a++++ L+ a++s+ +++ ++ +
  MMETSP0890-20130614|39145_1 331 KRRVTLVDVVSTRMVG-QSGFLARLFQSLSAADVSVDVVAtSEVS 374
                  56777899******88.*******************999977665 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 2.8e-10
                  --EEEEE---.---S----HHHHHHHHHT-----EEE-...-----EEEE-GGGHHHHHHHHHH CS
    PF13840.1   5 gwiklsvvgsglpfdvtGivakiaspLaeagIsifqiS...tyttdyiLVpeedlekAveaLhe 65 
                  + + +s+vg++++  +t ++a+ +++La++gI + +iS   +  ++ ++ ++ed ++A+  Lh+
  MMETSP0890-20130614|39145_1 404 NRAIISLVGDNMKDHSTAVLASCFNILANNGIHVEMISqgaSKVNIALVLDDEDTDAALPLLHD 467
                  66889*********************************************************96 PP

>> PF01842.20  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.6   8.9e+03       8      14 ..     304     310 ..     303     310 .. 0.88
   2 !    9.5   0.2   0.00017      0.59       2      62 ..     339     394 ..     339     398 .. 0.80
   3 !   19.1   0.0   1.8e-07   0.00061      13      64 ..     422     468 ..     410     470 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.6
                  ESSTHHH CS
   PF01842.20   8 pDrPGlL 14 
                  pD+PG+L
  MMETSP0890-20130614|39145_1 304 PDHPGTL 310
                  8****97 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00017
                  EEEEEEESSTHHHHHHHHHHHHTT--ECEEEEEEESS.EEEEEEEEEECHHHHHHHHHHHH CS
   PF01842.20   2 vlevgvpDrPGlLaevfgaLadrgiNidsisqstsgdkagivfvtvvvdeedleaaleaLk 62 
                  v++ ++  + G La++f+ L+ + +++d + +s+       v +t + + + +++a++ L 
  MMETSP0890-20130614|39145_1 339 VVSTRMVGQSGFLARLFQSLSAADVSVDVVATSEV-----SVSLTLDKNSQLDPTAIADLS 394
                  57789999************************997.....666666666666666666665 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 1.8e-07
                  HHHHHHHHHHHTT--ECEEEEEEESS.EEEEEEEEEECHHHHHHHHHHHHHH CS
   PF01842.20  13 lLaevfgaLadrgiNidsisqstsgdkagivfvtvvvdeedleaaleaLkkl 64 
                  +La  f++La++gi +++isq+ s      v++  v d+ed++aal  L++ 
  MMETSP0890-20130614|39145_1 422 VLASCFNILANNGIHVEMISQGAS-----KVNIALVLDDEDTDAALPLLHDC 468
                  677779*****************9.....79***************999976 PP

>> PF09413.5  Domain of unknown function (DUF2007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0029        10       5      37 ..     137     171 ..     134     182 .. 0.80
   2 ?    5.8   0.0    0.0032        11      17      64 ..     428     467 ..     427     469 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0029
    PF09413.5   5 rtndpveanmlkalLeeaGIeafikdenlsga..a 37 
                  +++  + +  l a L + GI+a+ kd  ++g+   
  MMETSP0890-20130614|39145_1 137 SFGERLSCRVLAAQLNQIGIPAIAKDAWTIGMrtI 171
                  66666777788999****************99663 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0032
    PF09413.5  17 alLeeaGIeafikdenlsgaaGelgsdgivrvlVaeedyekAreiLee 64 
                  ++L+++GI++ +  +++s +       + + +  ++ed + A  +L +
  MMETSP0890-20130614|39145_1 428 NILANNGIHVEMISQGASKV-------N-IALVLDDEDTDAALPLLHD 467
                  69**************9999.......2.999**********999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       446  (0.0326214); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:01.01
# Mc/sec: 1193.43
//
Query:       MMETSP0890-20130614|39149_1  [L=1018]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-12   45.5   6.5      0.021   14.6   0.2    6.8  7  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
        5.6    7.2  16.9        8.1    6.7   0.0    5.8  6  PF02985.17 HEAT repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0022        15      16      39 .]     638     661 ..     636     661 .. 0.93
   2 !   14.6   0.2     3e-06     0.021      14      39 .]     726     753 ..     724     753 .. 0.88
   3 ?   -3.1   0.0       1.1   7.9e+03      19      39 .]     814     834 ..     813     834 .. 0.64
   4 ?    2.5   0.0      0.02   1.3e+02      13      39 .]     853     877 ..     849     877 .. 0.89
   5 !   10.1   0.0   7.6e-05      0.52      19      39 .]     900     922 ..     882     922 .. 0.76
   6 ?    1.5   0.0     0.041   2.8e+02      13      32 ..     939     958 ..     932     963 .. 0.80
   7 !    7.6   0.0   0.00049       3.3      12      33 ..     986    1007 ..     980    1012 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0022
                  EEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  16 cvafspdgpllasgSrDgtirlWd 39 
                   ++f+p+ p+la   + + + lW+
  MMETSP0890-20130614|39149_1 638 HLRFHPHEPYLAVVDDKHGVSLWH 661
                  799********************6 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3e-06
                  EEEEEEESS..STEEEEEETTSEEEEEE CS
   PF00400.27  14 Vtcvafspd..gpllasgSrDgtirlWd 39 
                  Vt+v + +    +ll++gS+Dg +r+W+
  MMETSP0890-20130614|39149_1 726 VTAVEWLDAaqDSLLLCGSDDGVCRIWH 753
                  788888888888***************6 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.1
                  EESS.STEEEEEETTSEEEEEE CS
   PF00400.27  19 fspd.gpllasgSrDgtirlWd 39 
                  +++  g lla+g +   +r Wd
  MMETSP0890-20130614|39149_1 814 WAQAdGLLLATGDS-PYLRAWD 834
                  66664777777765.6667666 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.02
                  SEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  13 pVtcvafspdgpllasgSrDgtirlWd 39 
                   Vt+++++    l++ g  Dg+++l d
  MMETSP0890-20130614|39149_1 853 CVTALSYHSG--LVFAGFGDGSLKLID 877
                  6999999999..************965 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 7.6e-05
                  EESS..STEEEEEETTSEEEEEE CS
   PF00400.27  19 fspd..gpllasgSrDgtirlWd 39 
                    +   ++ l+s++ Dg+ + Wd
  MMETSP0890-20130614|39149_1 900 SYDVapQRQLVSACLDGNAKFWD 922
                  44445569**************9 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.041
                  SEEEEEEESSSTEEEEEETT CS
   PF00400.27  13 pVtcvafspdgpllasgSrD 32 
                  + t+   +p+ +llasgS++
  MMETSP0890-20130614|39149_1 939 TMTAFVAHPTASLLASGSHN 958
                  55667779999*******86 PP

  == domain 7    score: 7.6 bits;  conditional E-value: 0.00049
                   SSEEEEEEESSSTEEEEEE.TTS CS
   PF00400.27   12 spVtcvafspdgpllasgS.rDg 33  
                   spV+++af+p+ +lla ++  D+
  MMETSP0890-20130614|39149_1  986 SPVSALAFHPS-KLLAAAGaTDS 1007
                   79*********.55555552665 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.23   1.6e+03       2      18 ..      49      65 ..      49      69 .. 0.90
   2 ?    6.7   0.0    0.0012       8.1       1      17 [.      88     104 ..      88     105 .. 0.93
   3 ?   -4.2   0.1         2   1.4e+04      20      28 ..     247     255 ..     246     256 .. 0.75
   4 ?    2.6   0.1     0.024   1.7e+02      11      26 ..     283     299 ..     273     302 .. 0.85
   5 ?    1.0   0.2     0.081   5.5e+02      11      30 ..     357     376 ..     350     376 .. 0.89
   6 ?    4.2   0.0    0.0073        50       4      23 ..     433     452 ..     430     459 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.23
                 HHHHHHHHTSSSHHHHH CS
   PF02985.17  2 lPlllkllnDpspeVRe 18
                 lP++l+ l +++ +VR+
  MMETSP0890-20130614|39149_1 49 LPIVLQVLLSQAHRVRA 65
                 89**************7 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0012
                  HHHHHHHHHTSSSHHHH CS
   PF02985.17   1 llPlllkllnDpspeVR 17 
                  ++P++lkll++p+pe R
  MMETSP0890-20130614|39149_1  88 IFPYVLKLLQSPAPELR 104
                  79*************99 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 2
                  HHHHHHHHH CS
   PF02985.17  20 AaeaLgala 28 
                  A+ aL++++
  MMETSP0890-20130614|39149_1 247 AVAALCDFC 255
                  778888887 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.024
                  SS.SHHHHHHHHHHHHH CS
   PF02985.17  11 Dp.speVReaAaeaLga 26 
                  D+ +p  R+aA++aL+a
  MMETSP0890-20130614|39149_1 283 DEaDPTARAAAVRALAA 299
                  6679999*******987 PP

  == domain 5    score: 1.0 bits;  conditional E-value: 0.081
                  SSSHHHHHHHHHHHHHHHHC CS
   PF02985.17  11 DpspeVReaAaeaLgalaev 30 
                  D s  VR+  a aL++la+v
  MMETSP0890-20130614|39149_1 357 DASVLVRRELALALAELAQV 376
                  78889************985 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.0073
                  HHHHHHTSSSHHHHHHHHHH CS
   PF02985.17   4 lllkllnDpspeVReaAaea 23 
                  +l+ l +Dp+p+V +aA + 
  MMETSP0890-20130614|39149_1 433 ALVDLASDPAPSVAAAAQKV 452
                  6899************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1018 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.40u 0.35s 00:00:01.75 Elapsed: 00:00:00.97
# Mc/sec: 2514.94
//
Query:       MMETSP0890-20130614|39156_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-09   36.1   0.0    1.1e-08   34.8   0.0    1.7  1  PF00789.15 UBX domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.027   14.1   0.0    1.7  1  PF09409.5  PUB domain


Domain annotation for each model (and alignments):
>> PF00789.15  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.6e-12   1.1e-08       4      77 ..      61     138 ..      58     140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.6e-12
                  SSEEEEEEEE----EEEEEEESSSBHHHHHHHHHHHHSGCCTS.EEEEESSSTEEETSCC...SBCCCHSTSSSCEEE CS
   PF00789.15   4 edvcrlqiRlpDGsrlvrrFkksdtvesvyeyvdshldekeep.FkLltsfPrrlltksd...ktlseagllpnstlv 77 
                   +++ l+iRlp+G++++  F+k++t+++v +yv+     +++    L  s P r++  +d    +l +a+llp+++l+
  MMETSP0890-20130614|39156_1  61 DKDAELSIRLPNGTSIRAGFSKHETIRDVLNYVERFHAPSLTGnIILSISRPLRKFESDDdlnLSLAQAALLPRAALL 138
                  56899*****************************99999887666666677766776666678899999999999986 PP

>> PF09409.5  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.9e-06     0.027      35      79 ..       2      46 ..       1      53 [. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.9e-06
    PF09409.5 35 sNktfkekilsvegavelLellGFkeeee.eeflvlpeqseesled 79
                 ++k + +kils  g++el+  lGF+ + e e +++l+ +  +++e 
  MMETSP0890-20130614|39156_1  2 NSKLLSNKILSKAGGRELMGWLGFESKDEiEPKIELR-KLPNEKER 46
                 788999*********************8888888887.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1737  (0.127048); expected 273.4 (0.02)
Passed bias filter:                      535  (0.0391311); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.40s 00:00:01.03 Elapsed: 00:00:01.06
# Mc/sec: 556.14
//
Query:       MMETSP0890-20130614|39152_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-48  162.7   0.0    2.6e-47  160.9   0.0    1.7  2  PF02781.11 Glucose-6-phosphate dehydrogenase, C-terminal domain
    1.3e-28  100.4   0.0    2.8e-23   82.9   0.0    2.3  2  PF00479.17 Glucose-6-phosphate dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.065   12.5   0.1       0.21   10.9   0.0    1.9  1  PF03597.10 Cytochrome oxidase maturation protein cbb3-type


Domain annotation for each model (and alignments):
>> PF02781.11  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.12   5.5e+02      90     119 ..      31      60 ..      12      64 .. 0.84
   2 !  160.9   0.0   5.7e-51   2.6e-47       1     137 [.     224     352 .]     224     352 .] 0.96

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.12
                  GGEE---EE--------T---TTSTTS--- CS
   PF02781.11  90 edvvlgqYgasesgekekkgYledetvpkd 119
                   + v gq+  +e+  ++ k+Yle  ++++d
  MMETSP0890-20130614|39152_1  31 CHYVHGQFDDTEHFAQRLKPYLEHLEIERD 60 
                  45599***999999999******9998877 PP

  == domain 2    score: 160.9 bits;  conditional E-value: 5.7e-51
                  HHHHHS-S-----SSTTTEEEEEEEEE-----------GGG---IIIIIIIHHHHHHHHHH----SSS-HHHHHHHHHHHHTTB----GG.GEE---EE--------T---TTSTTS.-------S-EEEEEEB-STTT CS
   PF02781.11   1 lvlRFgnelfealWnrdnidsvqitvkeelGvegRgGYfDeaGilrDviqnhllqilalvamekPasleaediRdekvkvlkalkkidee.dvvlgqYgasesgekekkgYledetv.pkdsktetfvalkleieneRW 137
                  lvlRF+n  fea+W r +i+ v+i   ee+G++gRgGYfD++Gi+rDv+qnhl qilal+ame+P s+ a+diR ekvkvl+a++++d++ d+v+gq+          +gYl+d+t+ +k+sktetf+a +l i+n RW
  MMETSP0890-20130614|39152_1 224 LVLRFANVCFEAIWSRFHIARVEICCYEEIGTQGRGGYFDQYGIIRDVLQNHLAQILALIAMEQPLSFGADDIRREKVKVLRAVRPLDADrDLVIGQF----------DGYLDDDTIqDKNSKTETFAAARLFIDNPRW 352
                  79*************************************************************************************986489****9..........69***99962689****************** PP

>> PF00479.17  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.4e-06     0.016      43     100 ..       3      58 ..       1      89 [. 0.85
   2 !   82.9   0.0   6.2e-27   2.8e-23     102     183 .]     136     222 ..     124     222 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.4e-06
                  CTTTHTTTS--TT-...-GGGHHHHHHHHTTB------TS-HHHH.HHHHHHHHHS--. CS
   PF00479.17  43 deefrekvkealkkvakeeedeekleeflerlsYvsgdvddeesy.keLkeeleelekk 100
                   e+fr+ v +++ +   +++++++ ++fler++Yv+g++dd+e++ ++Lk  le+le +
  MMETSP0890-20130614|39152_1   3 LEQFRRIVYKSIYS---SAHTNAERSSFLERCHYVHGQFDDTEHFaQRLKPYLEHLEIE 58 
                  57888888888888...788888999******************945688888888764 PP

  == domain 2    score: 82.9 bits;  conditional E-value: 6.2e-27
                  ---SEEEEEE-S-HHHHHHHHHHHHHHT--..---.....-EEEEESS-----HHHHHHHHHHHHCCS-GGGEEE--TT---HHHHH CS
   PF00479.17 102 ktkgnrlfYlalppsvfeevvenlkeaglakeeeg.....wsrvviEKPfGrdlesakelneelakvfkeeqiyRIDHYLGKetvqn 183
                  +++  r++Yla+pp ++++++  l+++g+ +++++      sr v+EKPfGrdl+s+++l ++la+v++e++ yRIDHYLGKe+v n
  MMETSP0890-20130614|39152_1 136 ENRPLRIYYLAVPPFLYASICGALRHSGTRANDDNnilapLSRYVLEKPFGRDLTSCRALCAALAEVVRENETYRIDHYLGKELVMN 222
                  467789**********************9977766678888********************************************88 PP

>> PF03597.10  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.7e-05      0.21      27      39 ..      35      47 ..      34      49 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.7e-05
   PF03597.10 27 sgQfDDlegpahr 39
                 +gQfDD+e++a+r
  MMETSP0890-20130614|39152_1 35 HGQFDDTEHFAQR 47
                 69**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:01.12
# Mc/sec: 746.48
//
Query:       MMETSP0890-20130614|39161_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       673  (0.0492247); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 587.49
//
Query:       MMETSP0890-20130614|39199_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.028   14.1   0.0    1.7  1  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-06     0.028       7      88 ..     196     282 ..     191     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-06
                  --EEE-TT-B--EEEEEEE-EEEEEEE-----EEEEEEE-TTEECSGGGCCSSS......B-SSEEEEEEEEEEEEEEHHHHHHHHCC CS
   PF00027.24   7 gevifkeGdpadslyiilsGkvkvykndedgkesilaelgpGdffGelalltge......prsatvvaltdvevlvipredfrellek 88 
                   +vi +  + +ds+y i  G++ ++  +       l+ lg  d+fG+   ++        +r++ +++l++v vlv++ ++f + ++ 
  MMETSP0890-20130614|39199_1 196 EDVITRDLSMSDSMYAIHAGRIALFGRSCRHVL-RLELLGLHDVFGDDITMNLVgrkqklTRHYAAKTLSNVFVLVLDGDAFFQAIQA 282
                  5899999999***************99998775.5***********97666655666**************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 1057.02
//
Query:       MMETSP0890-20130614|39202_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-19   67.4  13.9    3.9e-05   23.2   0.0    5.8  7  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.62   8.4e+03       7      17 ..      39      49 ..      37      49 .. 0.79
   2 ?   -2.4   0.0      0.35   4.8e+03      22      37 ..      90     110 ..      72     110 .. 0.63
   3 !   21.8   0.1     8e-09   0.00011       7      39 .]     122     155 ..     120     155 .. 0.96
   4 !   23.2   0.0   2.8e-09   3.9e-05       9      38 ..     170     199 ..     168     200 .. 0.97
   5 !    7.6   0.1   0.00023       3.2       5      38 ..     231     262 ..     228     263 .. 0.94
   6 ?   -0.4   0.0     0.081   1.1e+03      21      39 .]     341     359 ..     328     359 .. 0.73
   7 !   19.9   0.1   3.2e-08   0.00044      12      39 .]     381     408 ..     373     408 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.62
                 EESSSSSEEEE CS
   PF00400.27  7 lrgHtspVtcv 17
                   g t++V+++
  MMETSP0890-20130614|39202_1 39 VGGNTGTVYAI 49
                 67999999986 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.35
                  S.....STEEEEEETTSEEEE CS
   PF00400.27  22 d.....gpllasgSrDgtirl 37 
                  +      pll+ +++ g+ ++
  MMETSP0890-20130614|39202_1  90 NedevsTPLLIVAGAHGSAKI 110
                  155555677777777777765 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 8e-09
                  EESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   7 lrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  l gH +++++++++p  + ll+++S+D + rlW+
  MMETSP0890-20130614|39202_1 122 LVGHGNAINDCRVHPIhPWLLVTASKDESARLWN 155
                  78*******************************7 PP

  == domain 4    score: 23.2 bits;  conditional E-value: 2.8e-09
                  SSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   9 gHtspVtcvafspdgpllasgSrDgtirlW 38 
                  gH + V  ++++  g+ll++++ D+t+++W
  MMETSP0890-20130614|39202_1 170 GHRDEVLTCDIHILGRLLCTAGMDNTVKIW 199
                  9***************************** PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.00023
                  EEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27   5 atlrgHtspVtcvafspdgpllasgSrDgtirlW 38 
                  +tl+ H++ V c +f  +  +++s S  ++i lW
  MMETSP0890-20130614|39202_1 231 STLDIHSNYVDCARFLGN--FIISKSTENKIILW 262
                  68999*************..************** PP

  == domain 6    score: -0.4 bits;  conditional E-value: 0.081
                  SSSTEEEEEETTSEEEEEE CS
   PF00400.27  21 pdgpllasgSrDgtirlWd 39 
                  ++ ++la g   g++ lW+
  MMETSP0890-20130614|39202_1 341 HSHSFLAAGNQRGSVSLWN 359
                  3467999999889999997 PP

  == domain 7    score: 19.9 bits;  conditional E-value: 3.2e-08
                  SSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgSrDgtirlWd 39 
                  ++V+ vafspd++lla +++D ++ ++d
  MMETSP0890-20130614|39202_1 381 HAVRQVAFSPDSNLLAFCCDDASVSVFD 408
                  89************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.58s 00:00:01.10 Elapsed: 00:00:01.53
# Mc/sec: 711.08
//
Query:       MMETSP0890-20130614|39194_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      336  (0.0245758); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.43s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1173.60
//
Query:       MMETSP0890-20130614|39198_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-28   96.2   0.1    8.7e-28   95.7   0.1    1.2  1  PF00986.16 DNA gyrase B subunit, carboxyl terminus
    8.5e-05   22.2   0.0    0.00014   21.5   0.0    1.4  1  PF01751.17 Toprim domain


Domain annotation for each model (and alignments):
>> PF00986.16  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.1   1.3e-31   8.7e-28       3      64 ..      65     126 ..      63     127 .. 0.96

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 1.3e-31
   PF00986.16   3 kkkveiqRfKGLGEMnpeqLweTTmdpetRtllrvtiedaeeaeelfetLmGkeveaRrefi 64 
                  ++   iqRfKGLGEM+p+qLweTTmdp+tR+l ++ ++d+ +a+++++ LmG++v +R++fi
  MMETSP0890-20130614|39198_1  65 NSTPMIQRFKGLGEMMPQQLWETTMDPATRKLQKIALDDVISADRTVSLLMGDSVVQRKDFI 126
                  66789********************************************************9 PP

>> PF01751.17  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.1e-08   0.00014      54      84 ..       1      33 [.       1      37 [. 0.92

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.1e-08
                 E--SS----HHHHHHHHHHTC-HHCEC..EECE CS
   PF01751.17 54 atDpDreGeaiawellellkrlnpsli..grve 84
                 +tD+D +G +i+ +ll++++r+ ++li  g+v+
  MMETSP0890-20130614|39198_1  1 MTDADIDGAHIRVLLLTFFYRYQRELIeqGHVY 33
                 7**************************988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      191  (0.0139702); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.40s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|39197_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-33  115.5   0.0    5.5e-33  114.2   0.0    1.6  1  PF00155.16 Aminotransferase class I and II
     0.0026   16.7   0.0      0.008   15.1   0.0    1.7  2  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
       0.03   12.9   0.0      0.052   12.1   0.0    1.3  1  PF00266.14 Aminotransferase class-V


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   1.2e-36   5.5e-33      37     339 ..      65     373 ..      37     432 .. 0.88

  Alignments for each domain:
  == domain 1    score: 114.2 bits;  conditional E-value: 1.2e-36
                  -B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHH....HHHHHHHHHHHHHHHHHHCC.CC.....-TCHHHH----EE-----HH.......HHHCCH---BE--..... CS
   PF00155.16  37 lneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs....eleemrqrlqkrrkelrdeLael.....glkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsft 339
                    +y    gl e++e++ ++l   ++l+    + ++ ++G++ +++ +  ll  + gdei+v d+t++ +  i++++g  v +++++  ++++ld eale al++ +  +k++ +  v s hNPtG+  ++e  + ++++++kyn++++ D+ Y  ++++++ +v+ ++ ++++  ++ + s++K f+ +G+R+G +++ +a+++   ++  + +   + l+q  + a l+d ++ +     +l++ + ++ +rr+ l+ +L++       l+++++ +gmfl+   s   +a+e+++ L++   v+v+pg++f+
  MMETSP0890-20130614|39197_1  65 GLQYHSGAGLTEFREEMLELLAPFHNLQNLSIDHICGTTGCTDGLSKAVELL-TEEGDEIFVEDLTWPGFLAIAKARGRFVKPVKMD--PQYGLDPEALEFALRNRQNSRKQPLLYTVPSGHNPTGVTVSEERKKLIYQICQKYNAIILEDDPYFFLAMDGQLPVS-YLSMDTDNRVIRLDSFAKIFA-PGLRLGVVIAPPAYIQKFLIANEQTCQfpCGLAQITAIALLRDWKKSKGgfsaHLTKLQTEYLRRRDILVHALKNQdahhnVLDFTIPSHGMFLFIKQSIFsNADEFAQLLTQA-DVAVVPGSCFE 373
                  56899999**************888888889999999999888888888888.68******************************88..9***************9999987888888999***************************************887777.888888877***********5.************************99998888888888888888876559***********************9999***99*************7766555566666666666.********997 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-06     0.008      41     113 ..      97     167 ..      61     170 .. 0.90
   2 ?   -1.9   0.0      0.25   1.2e+03     280     316 ..     304     339 ..     279     363 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-06
   PF01041.12  41 khavavssGtaAlllaLralgigpGdeVIvpsltfvAtanavlqlGakpvfvDvdpetlnldpaaieaaitpr 113
                  +h  +++ +t++l  a + l  ++Gde+ v  lt+ + ++ + + G  + +v +d  ++ ldp+a+e a+ +r
  MMETSP0890-20130614|39197_1  97 DHICGTTGCTDGLSKAVELLT-EEGDEIFVEDLTWPGFLAIAKARGRFVKPVKMD-PQYGLDPEALEFALRNR 167
                  68889999**********999.78*******************************.6799*******998776 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.25
   PF01041.12 280 fpvllkeeaavsrdelvealkeegigtrvhy.tnplha 316
                   ++ +  e  ++rd lv+alk+++ + +v+  t+p h 
  MMETSP0890-20130614|39197_1 304 TKLQT--EYLRRRDILVHALKNQDAHHNVLDfTIPSHG 339
                  33333..3456788899999988888887755666664 PP

>> PF00266.14  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05     0.052      35     175 ..      68     212 ..      54     219 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
                  -HHHHHHHHHHHHHHHHHHHHTT-S-..GGGEE---------HHHHHH---------EEEEETT--GGGTHHHHHHHHH---EEEEE-B-----B-GGGHHHH-......-TTEEEEEEESB-S----..B--HHH.HHHHHHH---EEEEE CS
   PF00266.14  35 htlgkeatealeearekvaelinaes..eeeiiFtsgttealnlvalslarslkagdeilvteaehhanlvpwqelakrtgakvkvipvdeegsldldelekll......tpktklvaithvsnvtGv..vqpvee.iaklakeagalvvvD 175
                  ++ g+ +te  ee+ e +a ++n ++   + i  t+g+t +l+ ++  l    ++gdei v ++  ++ l     +ak++g  vk +++d++  ld+++le +l      +++  l ++    n tGv    + ++ i +++++++a+++ D
  MMETSP0890-20130614|39197_1  68 YHSGAGLTEFREEMLELLAPFHNLQNlsIDHICGTTGCTDGLSKAVELL---TEEGDEIFVEDLTWPGFL----AIAKARGRFVKPVKMDPQYGLDPEALEFALrnrqnsRKQPLLYTVPSGHNPTGVtvSEERKKlIYQICQKYNAIILED 212
                  6777778888888999999999888511356666677777777666666...99**********999988....888899********************9999776654466667777888899998632223332667777788888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.57
# Mc/sec: 1850.98
//
Query:       MMETSP0890-20130614|39221_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-09   34.5   0.0    5.4e-09   34.5   0.0    1.0  1  PF00063.16 Myosin head (motor domain)


Domain annotation for each model (and alignments):
>> PF00063.16  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   3.9e-13   5.4e-09     208     273 ..       3      67 ..       1      69 [] 0.90

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3.9e-13
                  HTT--.-CCGSCCCHT----SBTTB-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----EE CS
   PF00063.16 208 elkLk.daksYaylsqsgqlkvdgidDaeefketrkalkilglkeeeqreifkvlAaiLhlGnikfk 273
                  +l+L   a++Y  ls   +l+vdg dD e+f+et++al+ +g+++++++  ++ +Aa L l +ikfk
  MMETSP0890-20130614|39221_1   3 NLGLAqGADQYPTLST--CLTVDGHDDGEDFRETKQALDDVGVPANAIHLAYRAVAACLALAQIKFK 67 
                  5666546788888887..9***********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       169  (0.012361); expected 273.4 (0.02)
Passed bias filter:                      166  (0.0121416); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.39s 00:00:00.70 Elapsed: 00:00:00.67
# Mc/sec: 246.79
//
Query:       MMETSP0890-20130614|39223_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-13   48.8   4.2    1.6e-12   47.1   2.9    1.9  1  PF00149.23 Calcineurin-like phosphoesterase
    1.2e-12   47.5   0.0    2.8e-12   46.4   0.0    1.6  1  PF14008.1  Iron/zinc purple acid phosphatase-like protein C
    1.5e-05   24.7   0.0    2.5e-05   24.0   0.0    1.3  1  PF12850.2  Calcineurin-like phosphoesterase superfamily domain


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   2.9   3.5e-16   1.6e-12      25     201 .]      15     188 ..       5     188 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 3.5e-16
                  HHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHHHHCHSTCSSTCCCEES..........T....EEEEETTEEEEEEETTSHCSTCHHHHHHHHHHHHHHCCEEESEEEEEESSSSCHHHCTTTTH..SCCHHHHHHHHHHHHTTSSEEEE-SSSSE CS
   PF00149.23  25 eiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqakdprglanaeeeyeel..........s....itllttsgelgglsglypllggeiqeeqleeflalplralvdgkilltHgplsssggssddigggelfgpdalekllekygvdlvlrGHeHvp 201
                  ++ ++ kpd +l +GDl++ + w+  +   + +l ++l+   p+  + GNHE ++  + + +++e+++ p            +          s      +l + + + +    +++ +       l ++      ++ ++  +l+H+p++ss g ++    + + +++a e++l+  gvd +++GH+H +
  MMETSP0890-20130614|39223_1  15 WNLGQMKPDAILLAGDLSYSDGWPFRWDTFA-RLIEPLASIYPILHVGGNHELGSS-ENWIHYLERWPTP------------NigqapsplfwSvdigPLHLIGLNSYDNFVQGGDRIQRAWLLSDLAHYTTYQRSHSQPWLAVLFHVPFYSSNGAHHL---EGELMRKAYEPILYAAGVDFIITGHVHAY 188
                  5677889**********************99.**********************75.4566666665432............1344443334414567888888888888888888888888999999999999*********************9987...5**************************86 PP

>> PF14008.1  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0     6e-16   2.8e-12       2      53 ..     203     257 ..     202     265 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 6e-16
                  S-EEEE----------...B-SS--TTEEEEE-------EEE-SSSEEEEEEE-S CS
    PF14008.1   2 ApvhIvvGaAGnkldk...fsepqpewsafresdyGysrltvvNrthLhwefvrs 53 
                  +p++   G+AGn++++   + +pqpews fres++G + + ++N++ L++e++r+
  MMETSP0890-20130614|39223_1 203 GPIYFGLGDAGNRESTytdWFQPQPEWSIFRESSFGVGQIIIHNSSSLRYEWHRE 257
                  79**********9765444888*******************************97 PP

>> PF12850.2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.5e-09   2.5e-05      25     124 ..      21     191 ..      10     216 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 5.5e-09
    PF12850.2  25 evdlilhaGDlvep..........eevvelledi.pvlavrGnhDeaelpkelavel....................................................llaaaaleiegdrvllvhgtplsvq........sseeelaellkeagadlvflGHtHkpkve 124
                  ++d+il aGDl  +            ++e l++i p+l+v Gnh+    ++ ++                                                       + ++++++ + + ++l+h  ++s +         + ++ +  l +ag+d+++ GH+H ++ +
  MMETSP0890-20130614|39223_1  21 KPDAILLAGDLSYSdgwpfrwdtfARLIEPLASIyPILHVGGNHELGSSENWIHYLErwptpnigqapsplfwsvdigplhliglnsydnfvqggdriqrawllsdlahYTTYQRSHSQPWLAVLFHVPFYSSNgahhlegeLMRKAYEPILYAAGVDFIITGHVHAYERT 191
                  489*******7332455566766677788889999*********8444444443222555555666666666666777777777666666667777777777766677666777766777888888887777555444444466667889999*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      390  (0.0285255); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.39s 00:00:01.19 Elapsed: 00:00:01.60
# Mc/sec: 693.45
//
Query:       MMETSP0890-20130614|39237_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-22   78.6   0.0    5.8e-22   78.1   0.0    1.2  1  PF00849.17 RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PF00849.17  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   4.3e-26   5.8e-22       2     161 ..      33     183 ..      32     186 .. 0.89

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 4.3e-26
   PF00849.17   2 lvvvnKPagvpvtpeakggsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapveeegaikskiskdtekqegarrkaeeldgkkavtylrvlksgskt....pksgksakvtlveleletGrkhQiRah 161
                  +++v+K++g+ +++ +            +  r  +++++++lvhRLD +tsG+l+lAk+++ a++l++af+er  rK Y++l+   p +++ +i+  + k +++ + +   +++++g+ a t  r+   g +     ++  +s +  l+   + tGr hQiR+ 
  MMETSP0890-20130614|39237_1  33 WLAVEKKSGMSMHGPK------------SILRVLPKESQYRLVHRLDDGTSGILVLAKNRKGARALSEAFSERRARKLYIGLTASVPAKKQCIIRGNMIK-ARRASWKLDRKCTQGGNCACTEMRFRGLGQREkeenSNFPTSVARRLLIALPYTGRSHQIRVA 183
                  68999**********9............999999******************************************************************.999999999999999999988766655554444587666677777788888**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       270  (0.0197484); expected 273.4 (0.02)
Passed bias filter:                      217  (0.0158719); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:01.14
# Mc/sec: 629.30
//
Query:       MMETSP0890-20130614|39260_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.9   1.6      0.012   15.7   1.1    1.1  1  PF10199.4 Alpha and gamma adaptin binding protein p34
       0.44   10.1   2.8       0.53    9.8   1.9    1.0  1  PF11875.3 Domain of unknown function (DUF3395)


Domain annotation for each model (and alignments):
>> PF10199.4  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   1.1   1.8e-06     0.012      86     125 ..      12      50 ..       2      54 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.8e-06
    PF10199.4  86 isdeqneeeegleeadvedlesllsklqaardnvrnlpde 125
                   +de+  +ee+ +++d+e les++++++ a+ +  n ++e
  MMETSP0890-20130614|39260_1  12 RKDERSSTEENRTKNDIEMLESMVERMKTAKAMG-NYTEE 50 
                  3567778999999******************998.46654 PP

>> PF11875.3  Domain of unknown function (DUF3395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.9   7.7e-05      0.53       4      45 ..      12      53 ..      10      55 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.7e-05
    PF11875.3  4 rkrkekeieeqrkklrkevakkreeaeeaikllkelverklk 45
                 rk ++   ee+r k+  e+ + + e ++  k++ + +e+kl+
  MMETSP0890-20130614|39260_1 12 RKDERSSTEENRTKNDIEMLESMVERMKTAKAMGNYTEEKLE 53
                 56677778*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1015  (0.0742393); expected 273.4 (0.02)
Passed bias filter:                      721  (0.0527355); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.46s 00:00:00.83 Elapsed: 00:00:00.76
# Mc/sec: 176.57
//
Query:       MMETSP0890-20130614|39279_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 274.88
//
Query:       MMETSP0890-20130614|39282_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-06   25.2   0.3    1.4e-05   24.6   0.2    1.2  1  PF01762.16 Galactosyltransferase


Domain annotation for each model (and alignments):
>> PF01762.16  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2     1e-09   1.4e-05      46     104 ..       2      60 ..       1      78 [. 0.85

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1e-09
   PF01762.16  46 klygDivv.vdledtYenltlKtltlllyavskvpeaklilkiDdDvyvnpdkLlsllkr 104
                  +++gDi+v +d+ d+ +n+t K l  l+y +++ +++  ++++ dDvy+++d+L+ + +r
  MMETSP0890-20130614|39282_1   2 AIQGDIIVlQDIVDAATNVTTKLLRSLQYFAKL-DNYTHYVRVEDDVYLFADRLAAVAAR 60 
                  5689987637******************97765.56******************987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       292  (0.0213575); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.35s 00:00:00.97 Elapsed: 00:00:00.82
# Mc/sec: 949.78
//
Query:       MMETSP0890-20130614|39289_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-39  135.6   7.8    2.5e-39  135.3   5.4    1.2  1  PF01148.15 Cytidylyltransferase family
     0.0051   16.5   0.3     0.0064   16.2   0.2    1.2  1  PF01864.12 Putative integral membrane protein DUF46
  ------ inclusion threshold ------
      0.097   12.1   0.2       0.25   10.7   0.1    1.7  1  PF02529.10 Cytochrome B6-F complex subunit 5


Domain annotation for each model (and alignments):
>> PF01148.15  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   5.4   5.5e-43   2.5e-39      69     251 ..      13     195 ..       1     196 [] 0.81

  Alignments for each domain:
  == domain 1    score: 135.3 bits;  conditional E-value: 5.5e-43
   PF01148.15  69 llvylesllallklvlllvlvllllvlkslklhrviltllyllyvvlflslllianileglivalllilvvwanDifAylvGkafGkt.l.......lpkispkKTveGflggfvaavlvgllfslvlskrllsllhllllsllaslvavfgdlfesglKRafgiKDsGkliPGhGgilDrldslllaapf 251
                  +++yl+s++  l    +++l         ++ ++ +++++ l  ++  +++ +i+      +++ + +l v+++Di+Ay+ Gk+fGk+ l       + k sp+KT+eG+l gf+aa l +++ ++++++r l ++ + +++l +s++a +gdl++s+lKR+ +iKD+G+++PGhGg+lDrld  +++ap+
  MMETSP0890-20130614|39289_1  13 YTAYLPSWWVRLRCSPTWDLA-------LIASSDGTTAAFDLSAFAPSIVAPIITSNSLASVAVWWTCLAVAVADIGAYFGGKRFGKRsLrsiglgaAAKASPNKTIEGALSGFAAAALTTSIAAYIMHWR-LPFILGPIFGLAISMTALVGDLTASMLKRDSKIKDFGSFLPGHGGLLDRLDGFIFVAPL 195
                  223332223222222222222.......33456667777777777777799999999999****************************7444555555689*****************************9.999******************************************************98 PP

>> PF01864.12  Putative integral membrane protein DUF46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   1.4e-06    0.0064      42     115 ..      96     170 ..      63     195 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
   PF01864.12  42 rllGdGktwrGfvaGvlvGvlvgiiqyllvk.lsilalefsgslleavilafllslGalvGdlvGsfikrrlnie 115
                  r +G G + +     ++ G l g    +l+  +++  +++ ++++   i ++ +s+ alvGdl  s++kr  +i+
  MMETSP0890-20130614|39289_1  96 RSIGLGAAAKASPNKTIEGALSGFAAAALTTsIAAYIMHWRLPFILGPIFGLAISMTALVGDLTASMLKRDSKIK 170
                  55677777777666777777777776666431344668899*****************************98885 PP

>> PF02529.10  Cytochrome B6-F complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.5e-05      0.25      15      27 ..       5      17 ..       4      18 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.5e-05
                 HHHH---HHHHHH CS
   PF02529.10 15 pvTlaGLfvaAYl 27
                   Tl+GLf++AYl
  MMETSP0890-20130614|39289_1  5 STTLMGLFYTAYL 17
                 56**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       432  (0.0315974); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 824.01
//
Query:       MMETSP0890-20130614|39292_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       581  (0.0424956); expected 273.4 (0.02)
Passed bias filter:                      449  (0.0328408); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.43s 00:00:00.75 Elapsed: 00:00:00.69
# Mc/sec: 215.32
//
Query:       MMETSP0890-20130614|39285_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-19   69.2   0.0    3.7e-19   68.5   0.0    1.3  1  PF02204.13 Vacuolar sorting protein 9 (VPS9) domain


Domain annotation for each model (and alignments):
>> PF02204.13  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   2.7e-23   3.7e-19       1     103 [.     385     507 ..     385     508 .. 0.97

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 2.7e-23
   PF02204.13   1 lekaseeLkklneakspreKlncivrackeitsav....................sssskgeslgaDdlLPiliyvviksnppnllsnvqyiqefrskkllsgeegYylttlqaavefienle 103
                  + +a++ L+++ +a +p+ K++ i +a++ i++++                    +s+ ++ + gaDdlLP++i+  ++++ pnll+++ +i+ + ++++l+ge+g+ lt++ aa++f+++++
  MMETSP0890-20130614|39285_1 385 WPRAVDALRSMPQALTPKRKVKKIRSAVDDIFQCLaryhreyrekkrlketsdseESDDDSVPPGADDLLPLVILATLRARTPNLLADLRFIELYSADDRLHGEDGFLLTQVVAAASFLRHVD 507
                  77899************************************************999999999*********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       740  (0.0541252); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.06u 0.40s 00:00:01.46 Elapsed: 00:00:00.92
# Mc/sec: 1721.73
//
Query:       MMETSP0890-20130614|39296_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       204  (0.014921); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 213.43
//
Query:       MMETSP0890-20130614|39299_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   60.7   0.6    1.6e-16   60.4   0.4    1.2  1  PF03737.10 Demethylmenaquinone methyltransferase


Domain annotation for each model (and alignments):
>> PF03737.10  Demethylmenaquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.4   1.2e-20   1.6e-16      87     154 .]       2      70 ..       1      70 [. 0.90

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 1.2e-20
                  T----EE---BS-HHHHTTS----EE----SSB-B-.-----BS--EEETTEEE----EEEB-----EE CS
   PF03737.10  87 gweGvvvyGavRdvdeleeldlpvfalgvtpvaaek.kaigevnvpvtcgGvtvipgDyivaDedGivv 154
                  ++ G+v +G+vRd+del +  +pvf++ +tp+++    +    nv ++cgGv v+pgD i++D+dG+vv
  MMETSP0890-20130614|39299_1   2 EIGGLVTDGSVRDTDELLNYGFPVFSYSTTPRQGPAaMQPWACNVVINCGGVAVRPGDAIIGDQDGVVV 70 
                  577*****************************9644044455**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       226  (0.0165301); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.99
# Mc/sec: 348.56
//
Query:       MMETSP0890-20130614|39306_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       615  (0.0449824); expected 273.4 (0.02)
Passed bias filter:                      355  (0.0259655); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.69
# Mc/sec: 625.14
//
Query:       MMETSP0890-20130614|39304_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-46  156.1   0.0    1.2e-45  155.5   0.0    1.2  1  PF00069.20 Protein kinase domain
    3.6e-28   98.2   0.0      5e-28   97.7   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.023   14.3   0.4      0.055   13.0   0.1    1.8  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   2.7e-49   1.2e-45       3     258 ..     241     503 ..     239     504 .. 0.90

  Alignments for each domain:
  == domain 1    score: 155.5 bits;  conditional E-value: 2.7e-49
                  EEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH..........HHCCB..-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHH..TSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSG CS
   PF00069.20   3 lleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk..........kegkl..seeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvll..kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhp 258
                  l+ +lG G+f++V+ ak+kk+g +vA+K+++++ +  + +++a+ E++ l+ l++++++ +++++++  +lyl le++e g+++++++          ++ ++  +++ + ++++ + +gl+++Hs+g++H DLKp+N+Ll+    lk+aDFGla      ++ ++ l g  +Y+APE+ll  ++   ++++D++slG++l+el+++ +   +++  ++    +  ++++++ +      +s++l+ ++ ++l+++p++R+ta++i +hp
  MMETSP0890-20130614|39304_1 241 LGPRLGTGTFSQVFAAKRKKDGIRVAIKRVNQPFRTYRGREAALVEARTLAALHSEYVIDFYDAWQQYGHLYLQLELCEFGSVAAIISaviatttqsaAHAPIlnETHVLWRFISDVSRGLDHVHSQGFVHLDLKPANVLLT-PTALKLADFGLAT--AIGRRLADGLEGDARYLAPELLLldDSLSVDPAADLFSLGLTLFELTKQATSKARTHLPTSGPAWHGLRSGNVQASPH----HSDDLNTILASVLRREPSTRSTAAQIANHP 503
                  5678********************************************************************************9999999999988844444656667789******************************.999*********8..689999***************77669999*****************99988777776666666666666666666555....4599*************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.1e-31     5e-28       3     257 ..     241     501 ..     239     502 .. 0.86

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 1.1e-31
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEECT.TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHT.........GTTGS.BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE...EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkk.........ekekl.tlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlgespypgl.sneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                  lg +lG G+f++V+ ++ k    k+ ++Va+K +++   + + +e+ l ea+++ +l+ + ++ ++ +  + ++l++ +e+++ G++  ++ +          + + l +++ l +f+ ++++G+++ +s+ +vH dL   NvLl+  +  k++DfGLa  i      +  ++ +   +++apE+l       +  ++D +s G +l+E+ +++ s   +   ++  +++  ++ ++++  + +++l++++ + +++ep+ R t +++ +
  MMETSP0890-20130614|39304_1 241 LGPRLGTGTFSQVFAAKRK----KDGIRVAIKRVNQpFRTYRGREAALVEARTLAALHSEYVIDFYDAWQQYGHLYLQLELCEFGSVAAIISAViatttqsaaHAPILnETHVLWRFISDVSRGLDHVHSQGFVHLDLKPANVLLT-PTALKLADFGLATAI----GRRLADGLEGDARYLAPELLLLDDslsVDPAADLFSLGLTLFELTKQATSKARTHlPTSGPAWHGLRSGNVQASPHHSDDLNTILASVLRREPSTRSTAAQIAN 501
                  5678*************99....999********6636666779************************************************999999999974444414556889******************************.999************....456778888999******9865544558899***************99988887734444444446666667777799********************999975 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.2e-05     0.055     157     197 ..     361     396 ..     264     403 .. 0.66
   2 ?   -2.5   0.0      0.65     3e+03     115     162 ..     408     455 ..     396     479 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.2e-05
                  HHHHHCSS--EEB-SS-SGGGEEEETTTTEEEE---TT-BB CS
   PF01636.18 157 aallpgaeppvllHgDlhpgNllvdpddgrvgviDfedagl 197
                  +++     +++++H Dl+p+N+l++p+  +  + Df++a+ 
  MMETSP0890-20130614|39304_1 361 LDH---VHSQGFVHLDLKPANVLLTPTALK--LADFGLATA 396
                  334...558****************66666..899999875 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.65
                  GGHCTBCTHHHHHHHHHHHHHHHHHCTHH...HHHHHHHHHHHHHHHHHHC CS
   PF01636.18 115 ladflapyltllrllesataalvaselle...lleeleervlaalaallpg 162
                   a++lap l ll +  s  +   a++l+    +l+el++++  +   +lp 
  MMETSP0890-20130614|39304_1 408 DARYLAPELLLLDDSLSVDP---AADLFSlglTLFELTKQATSKARTHLPT 455
                  33333333333333333333...3333335556888888877777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       338  (0.0247221); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.39s 00:00:01.29 Elapsed: 00:00:00.89
# Mc/sec: 1591.29
//
Query:       MMETSP0890-20130614|39308_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-52  176.7   0.4    9.3e-52  176.1   0.3    1.2  1  PF00884.18 Sulfatase
  ------ inclusion threshold ------
      0.046   12.9   0.1       0.52    9.4   0.1    2.1  2  PF01663.17 Type I phosphodiesterase / nucleotide pyrophosphatase


Domain annotation for each model (and alignments):
>> PF00884.18  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.3   1.4e-55   9.3e-52       1     379 []      60     524 ..      60     524 .. 0.83

  Alignments for each domain:
  == domain 1    score: 176.1 bits;  conditional E-value: 1.4e-55
                  -EEEEEEEST--CCHCCHB---SCS.SHHHHHHHCSSEEESSEE-SCSSHHHHHHHHHHS--CCCH--HCCT..TT..CBTTTTS--HHHHCCCGT-EEEEE----TCGGGHHCCCHH----CCC-....CCCCGGGCSC-EEETTTE...............S.GGGSHHHHHHHHHHHHH.HHCT.TSSEEEEEE--TTSSS----TTTTTSS-GGGS...............HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEEE-----GGG....HHH-TT----HHHHHHCCBEEEEEEE----TT..........EE-S-EEGGGHHHHHHHH-.--.....--TTST-----THHHH----.......................................................S.TT..CCEE..E.EEEECTB.CCCCCTS.CCCSCCCEEETTT-TCC-CC CS
   PF00884.18   1 pnvvliladdlgagdlglyggptrt.tpnldrlaeegllftnfysaapltspsraalltgryphntgvtsnteygg..gglprteetLpellkqaGYntaaigkwhlgwlsrqsvyknrGFdrflgfptgednlknpedveynnsvlr...............ppeggysdealldealefl.larn.dkPfflylatlgpHappyapdeyaekyatffddgeeka.........rqleaylnsveyvDdaigrvlaaLeenglldnTlvvftSDHgaslee....gngplrggkgvnayeggtrvPllvwwpggkap.........rvseelvshvDlaptildla.gilpkvegpkdrlldgksllptlegka.......................................................qaddlkavrl..l.nsraivkagweavnldpadasgcsydltaDpgelkn 379
                  +n+v+ l+dd+g +d+g+++      tp+l++la++g++ +++y+  +l++p+raalltgr p++tg+ s+   g+  +glp + e +p++lk+ GY  +aigkwhlg++ ++  +  rGFd+f+g+ +g  ++  +  +  ++ + +               + + +    +l + a +++   +n d P fly+a   +H p + p +  +         +++            ++a+++    +D++ g++++ L+ ++l+ +T+++  SD+ga+       +n+plrg kg    +gg+r+P+++  p   +            +++l s vD++pt++++a g       + +  +dg+s + +l   a                                                       +++ +  +++  + n    v a+ +  + ++a ++++ +dl++Dp e++n
  MMETSP0890-20130614|39308_1  60 KNIVIFLIDDQGHNDFGTNSTDLSWtTPRLSELAANGIRINRHYAM-HLCTPARAALLTGRLPIHTGMQSSMISGNapWGLPLHFEIMPNILKKDGYGCHAIGKWHLGHFHQDFLPQSRGFDSFFGSYSGFQDHFSHVSEVSFCAIDGagcwfdlhasstpvtNHQDEFAIFILGQAANKIIqNHNNkDIPLFLYFAAPTVHMPIEPPGDALNL--------STNLrlkleaipnARRRAFAAETLAMDYVAGSLIDNLQNQHLWHDTIFCALSDNGAQPQVvgsgNNYPLRGMKG-FYFDGGIRTPAFIFTPFLSSImdtttlekqYSYDGLFSIVDWLPTLYQAAtGK-----KKFTQDIDGVSHWDALLKVAsnsntskekqsirtnlilnidefscdinatapeclagnlsyptgsiivnntikliRNAIWLPIWNvpFtNDLQNVSADAQEETWADAHVQDFVFDLKNDPTESQN 524
                  6*******************998766******************77.5*******************998887777**********************************8887777******88866665555555555556666669*********87765444444444555666666685555599************877766666665........3333445566678*******************************************9977**************.*****************999999999998888999999************776.....455677888888888777777888888888999999999999999**********************9998887744444444445444555555555555555566666666*******99876 PP

>> PF01663.17  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   7.6e-05      0.52      20      64 ..      85     127 ..      64     154 .. 0.90
   2 ?    0.8   0.0     0.031   2.1e+02     214     246 ..     298     330 ..     284     350 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.6e-05
                  SSHHHHHHHH---EES-EE--SS-SHHHHHHHHH----TTT---- CS
   PF01663.17  20 dtpglaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgsHGiv 64 
                  +tp l++La +g++++  r ++  l  p+ a+l+TG+ P ++G+ 
  MMETSP0890-20130614|39308_1  85 TTPRLSELAANGIRIN--RHYAMHLCTPARAALLTGRLPIHTGMQ 127
                  79**************..667777889****************96 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.031
                  HHHH--------TTTT-CCCEEEEEE------- CS
   PF01663.17 214 vDraigqLlealdergllentniilvSDHGmad 246
                   D + g L++ l+ ++l+ +t +  +SD G+++
  MMETSP0890-20130614|39308_1 298 MDYVAGSLIDNLQNQHLWHDTIFCALSDNGAQP 330
                  6778899***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      392  (0.0286717); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.41s 00:00:01.53 Elapsed: 00:00:01.03
# Mc/sec: 1572.75
//
Query:       MMETSP0890-20130614|39316_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-32  108.3   8.8    4.6e-06   26.3   0.1    6.4  6  PF13854.1  Kelch motif
    6.6e-27   92.8  14.3    2.9e-06   27.1   0.0    7.0  6  PF13415.1  Galactose oxidase, central domain
    2.1e-24   84.9   9.6    2.2e-06   27.2   0.0    5.9  6  PF13418.1  Galactose oxidase, central domain
    1.4e-17   62.8  12.9    0.00045   20.1   0.0    6.8  6  PF13964.1  Kelch motif
    4.4e-17   61.2   8.2    0.00065   19.0   0.0    6.3  6  PF01344.20 Kelch motif
    1.2e-15   56.7   9.3    1.6e-05   24.6   0.0    6.1  6  PF07646.10 Kelch motif
  ------ inclusion threshold ------
      0.084   11.4   0.0        2.4    6.6   0.0    2.4  3  PF03089.9  Recombination activating protein 2


Domain annotation for each model (and alignments):
>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.9e-05      0.15      17      41 ..      37      58 ..      23      59 .. 0.88
   2 !   25.7   0.0   3.5e-09   6.9e-06       1      37 [.      73     107 ..      73     114 .. 0.93
   3 !   15.2   0.0   6.9e-06     0.013       2      39 ..     144     181 ..     142     183 .. 0.86
   4 !   20.5   0.1   1.5e-07   0.00029       1      37 [.     195     238 ..     195     240 .. 0.83
   5 !   26.3   0.1   2.4e-09   4.6e-06       2      38 ..     261     306 ..     259     309 .. 0.83
   6 !    8.4   0.0   0.00098       1.9       2      38 ..     329     377 ..     328     378 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.9e-05
    PF13854.1 17 iylyGGksgnddsvsddvyvLslps 41
                 ++++GG++   +++s++++ L++++
  MMETSP0890-20130614|39316_1 37 LICFGGFG---GGYSNEAWLLDIRG 58
                 789*****...8***********98 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 3.5e-09
    PF13854.1   1 lPppRarhcavvvsgniylyGGksgnddsvsddvyvL 37 
                  lPp Ra+h+ v  +gn++++GG++  + ++++dv++L
  MMETSP0890-20130614|39316_1  73 LPPRRAYHSGVEFNGNLIIFGGVN--QLTLLNDVWQL 107
                  6***********************..7********98 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 6.9e-06
    PF13854.1   2 PppRarhcavvvsgn..iylyGGksgnddsvsddvyvLsl 39 
                  P  R +h a + s+n  ++++GG++g  ++++ d+++++ 
  MMETSP0890-20130614|39316_1 144 PNKRQGHTASMISENdaMLIIGGYDG--SEYLVDAWIFNF 181
                  7789*******986555********6..*********985 PP

  == domain 4    score: 20.5 bits;  conditional E-value: 1.5e-07
    PF13854.1   1 lPppRarhcavvv.........sgniylyGGksgnddsvsddvyvL 37 
                  +P+pRa hc+  v         sg  y+yGG++  +++ + d+ vL
  MMETSP0890-20130614|39316_1 195 PPAPRAAHCMGLVtppfsdtqnSGLAYIYGGYN--NQGCLGDIAVL 238
                  59*********99898876666689********..77767787776 PP

  == domain 5    score: 26.3 bits;  conditional E-value: 2.4e-09
    PF13854.1   2 PppRarhcavvvsgniylyGGks......g...nddsvsddvyvLs 38 
                  P pR++++a+v++gniy++GG +           +  ++d+++vLs
  MMETSP0890-20130614|39316_1 261 PMPRYGAAAAVYEGNIYIFGGTGpvksykKnvdYRVVSYDEILVLS 306
                  669********************88875514455888899999998 PP

  == domain 6    score: 8.4 bits;  conditional E-value: 0.00098
    PF13854.1   2 PppRarhcavvvsgn.....iylyGGksg.......nddsvsddvyvLs 38 
                  P pR++h+ ++ sg+     + ++GG ++       + + ++ dv vLs
  MMETSP0890-20130614|39316_1 329 PIPRHGHAIAATSGQgfqscLVVTGGSTQgsfaprdPAPRLLRDVAVLS 377
                  88*********997444445*******9433444344444455555555 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.6e-08   0.00013       4      47 ..      37      83 ..      36      85 .. 0.87
   2 !   13.9   0.0   2.2e-05     0.042       2      47 ..      87     153 ..      86     155 .. 0.79
   3 !   27.1   0.0   1.5e-09   2.9e-06       1      46 [.     158     204 ..     158     207 .. 0.91
   4 !   22.8   0.2   3.5e-08   6.8e-05       4      49 .]     220     272 ..     217     272 .. 0.84
   5 !   10.0   0.4   0.00034      0.66       1      48 [.     274     339 ..     273     340 .. 0.76
   6 ?    0.2   0.0      0.43   8.4e+02       4      13 ..     349     364 ..     347     390 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.6e-08
    PF13415.1  4 lyvfGGlgddgqtrlndvyvldl.dtn...tweei...gslPppRaghtat 47
                 l+ fGG+g   + ++n+ + ld+   +   tw  i   g lPp Ra+h+++
  MMETSP0890-20130614|39316_1 37 LICFGGFG---GGYSNEAWLLDIrG-DeeaTWFHIqveGILPPRRAYHSGV 83
                 789*****...99**********62.4457***8888************87 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.2e-05
    PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtn..................tweei.....gslPppRaghtat 47 
                  + l++fGG +  + t lndv+ l +d                    +w+++     g+ P  R ghta+
  MMETSP0890-20130614|39316_1  87 GNLIIFGGVN--QLTLLNDVWQLMIDWIpdesvawrpgetplrpvgNWQKVqvrqeGPRPNKRQGHTAS 153
                  459*******..9*********966322333355557888899999999889999999999*****998 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 1.5e-09
    PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldtntweei...gslPppRaghta 46 
                  +d ++++GG++  g ++l d ++++ +t +w+     g +P pRa h +
  MMETSP0890-20130614|39316_1 158 NDAMLIIGGYD--GSEYLVDAWIFNFETQNWTMPrvhGVPPAPRAAHCM 204
                  688********..*******************55558**********76 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 3.5e-08
    PF13415.1   4 lyvfGGlgddgqtrlndvyvldldtn...twe...ei...gslPppRaghtatai 49 
                  +y++GG++  +q +l+d  vl +  +    w+   +    g+ P pR+g++a+++
  MMETSP0890-20130614|39316_1 220 AYIYGGYN--NQGCLGDIAVLAIGHDghvAWDaeyTDavqGPAPMPRYGAAAAVY 272
                  8*******..*************77778866664422579************986 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.00034
    PF13415.1   1 gdelyvfGGlgd.........dgqtrl....ndvyvldldtn...tweei.......gslPppRaghtata 48 
                  g+ +y+fGG g+                    + +vl+ +++    w+         g  P pR+gh+++a
  MMETSP0890-20130614|39316_1 274 GN-IYIFGGTGPvksykknvdY----RvvsyDEILVLSFSNPfrpAWRLDpkrrnftGARPIPRHGHAIAA 339
                  44.9*******99777544433....155559999999999999999944456677788899******997 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 0.43
    PF13415.1   4 lyvfGGlgd......d 13 
                  l+v GG++       d
  MMETSP0890-20130614|39316_1 349 LVVTGGSTQgsfaprD 364
                  8999999965555444 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05     0.028       5      48 ..      27      74 ..      25      75 .. 0.71
   2 !   22.0   0.0   4.7e-08   9.1e-05       2      36 ..      77     109 ..      76     125 .. 0.93
   3 !   27.2   0.0   1.1e-09   2.2e-06       2      42 ..     147     187 ..     146     199 .. 0.85
   4 !   13.2   0.2   2.6e-05     0.052      12      34 ..     217     238 ..     198     241 .. 0.79
   5 !   10.4   0.0    0.0002      0.39       4      23 ..     265     284 ..     263     320 .. 0.80
   6 ?   -2.7   0.1       2.3   4.5e+03      15      21 ..     349     355 ..     331     360 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    PF13418.1  5 hsavavpdgrlylfGGenedggplnDlyvfDlstntWtrl......pslP 48
                 +++v  +  rl++fGG ++ g  +n+++++D+   +  ++      + lP
  MMETSP0890-20130614|39316_1 27 CTLVEMAPLRLICFGGFGG-G-YSNEAWLLDIRGDEEATWfhiqveGILP 74
                 5566656679*********.5.**********887543333333356666 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 4.7e-08
    PF13418.1   2 RaghsavavpdgrlylfGGenedggplnDlyvfDl 36 
                  Ra+hs v   +g l++fGG n   ++lnD++++ +
  MMETSP0890-20130614|39316_1  77 RAYHSGVEF-NGNLIIFGGVNQL-TLLNDVWQLMI 109
                  9********.8************.9******9865 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 1.1e-09
    PF13418.1   2 Raghsavav.pdgrlylfGGenedggplnDlyvfDlstntWt 42 
                  R+gh+a+ +  ++ ++++GG++++   l D+++f+++t  Wt
  MMETSP0890-20130614|39316_1 147 RQGHTASMIsENDAMLIIGGYDGS-EYLVDAWIFNFETQNWT 187
                  99******956677*********9.8***************6 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 2.6e-05
    PF13418.1  12 dgrlylfGGenedggplnDlyvf 34 
                  +g  y++GG+n++g +l+D+ v+
  MMETSP0890-20130614|39316_1 217 SGLAYIYGGYNNQG-CLGDIAVL 238
                  5789*********6.****9986 PP

  == domain 5    score: 10.4 bits;  conditional E-value: 0.0002
    PF13418.1   4 ghsavavpdgrlylfGGene 23 
                  +++a av  g +y+fGG ++
  MMETSP0890-20130614|39316_1 265 YGAAAAVYEGNIYIFGGTGP 284
                  677777999********987 PP

  == domain 6    score: -2.7 bits;  conditional E-value: 2.3
    PF13418.1  15 lylfGGe 21 
                  l+++GG 
  MMETSP0890-20130614|39316_1 349 LVVTGGS 355
                  7888886 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0011       2.2      13      38 ..      36      59 ..      25      68 .. 0.82
   2 !   14.7   0.0   1.1e-05     0.022       2      32 ..      77     106 ..      76     107 .. 0.94
   3 !   20.1   0.0   2.3e-07   0.00045       6      45 ..     153     196 ..     147     201 .. 0.80
   4 ?    4.2   0.1     0.025        48      12      23 ..     218     229 ..     209     238 .. 0.81
   5 !   14.7   0.7   1.2e-05     0.024       1      40 [.     263     324 ..     263     334 .. 0.75
   6 ?    3.0   0.1     0.057   1.1e+02       1      23 [.     331     358 ..     331     379 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0011
    PF13964.1 13 kiyifGGytnsgkylndvlvydpetk 38
                 ++ +fGG+++   y+n+ +++d++ +
  MMETSP0890-20130614|39316_1 36 RLICFGGFGG--GYSNEAWLLDIRGD 59
                 789******8..5*********9876 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.1e-05
    PF13964.1   2 raghsavsvggkiyifGGytnsgkylndvlv 32 
                  ra+hs v ++g + ifGG ++  + lndv+ 
  MMETSP0890-20130614|39316_1  77 RAYHSGVEFNGNLIIFGGVNQ-LTLLNDVWQ 106
                  89*******************.8******96 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 2.3e-07
    PF13964.1   6 savsvggkiyifGGytnsgkylndvlvydpetksWeq.....lpp 45 
                  s++s ++   i+GGy++ ++yl d +++++et  W++     +pp
  MMETSP0890-20130614|39316_1 153 SMISENDAMLIIGGYDG-SEYLVDAWIFNFETQNWTMprvhgVPP 196
                  6677777789*******.8****************9855555555 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.025
    PF13964.1  12 gkiyifGGytns 23 
                  g  yi+GGy+n+
  MMETSP0890-20130614|39316_1 218 GLAYIYGGYNNQ 229
                  567*******96 PP

  == domain 5    score: 14.7 bits;  conditional E-value: 1.2e-05
    PF13964.1   1 praghsavsvggkiyifGGytns......................gkylndvlvydpetksW 40 
                  pr+g +a+++ g iyifGG +                        +++++  +++dp+ + +
  MMETSP0890-20130614|39316_1 263 PRYGAAAAVYEGNIYIFGGTGPVksykknvdyrvvsydeilvlsfSNPFRPAWRLDPKRRNF 324
                  689999*************9987777777777777777777777766777777777666655 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.057
    PF13964.1   1 praghsavsvggk.....iyifGGytns 23 
                  pr+gh++++  g+     +++ GG+t++
  MMETSP0890-20130614|39316_1 331 PRHGHAIAATSGQgfqscLVVTGGSTQG 358
                  688887766443223555********96 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.02        40      14      40 ..      37      64 ..      36      67 .. 0.83
   2 !   18.4   0.0   5.1e-07   0.00099       1      32 [.      76     106 ..      76     109 .. 0.95
   3 !   16.8   0.1   1.7e-06    0.0033       7      41 ..     154     187 ..     150     188 .. 0.89
   4 ?    0.6   0.4      0.18   3.6e+02      15      24 ..     221     229 ..     217     246 .. 0.83
   5 !   19.0   0.0   3.3e-07   0.00065       1      23 [.     263     289 ..     263     322 .. 0.77
   6 ?    0.2   0.0      0.26     5e+02      12      24 ..     347     358 ..     344     378 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.02
                 EEEE---BSTTS-TTEEEEEETT...TTEE CS
   PF01344.20 14 iYviGGrdgdtnalnsVerYDpv...tntW 40
                 + ++GG+ g   ++n  + +D +   + tW
  MMETSP0890-20130614|39316_1 37 LICFGGFGG--GYSNEAWLLDIRgdeEATW 64
                 789*****8..**********996666666 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 5.1e-07
                  SSSCEEEEEETTEEEEE---BSTTS-TTEEEE CS
   PF01344.20   1 arssagvvvldgkiYviGGrdgdtnalnsVer 32 
                  +r++++ v ++g + ++GG ++  + ln+V++
  MMETSP0890-20130614|39316_1  76 RRAYHSGVEFNGNLIIFGGVNQ-LTLLNDVWQ 106
                  69********************.*******97 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 1.7e-06
                  EEEETTEEEEE---BSTTS-TTEEEEEETTTTEEE CS
   PF01344.20   7 vvvldgkiYviGGrdgdtnalnsVerYDpvtntWe 41 
                  + + ++ + +iGG+dg +++l + ++++ +t+ W+
  MMETSP0890-20130614|39316_1 154 MISENDAMLIIGGYDG-SEYLVDAWIFNFETQNWT 187
                  666688899*******.*****************8 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.18
                  EEE---BSTT CS
   PF01344.20  15 YviGGrdgdt 24 
                  Y+ GG+++ +
  MMETSP0890-20130614|39316_1 221 YIYGGYNN-Q 229
                  9******8.4 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 3.3e-07
                  SSSCEEEEEETTEEEEE---BS....T CS
   PF01344.20   1 arssagvvvldgkiYviGGrdg....d 23 
                  +r++a+++v+ g iY++GG  +     
  MMETSP0890-20130614|39316_1 263 PRYGAAAAVYEGNIYIFGGTGPvksyK 289
                  8******************98866552 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 0.26
                  TEEEEE---BSTT CS
   PF01344.20  12 gkiYviGGrdgdt 24 
                   ++ v+GG+++ +
  MMETSP0890-20130614|39316_1 347 SCLVVTGGSTQ-G 358
                  5799*****99.4 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.3   5.8e+02      14      38 ..      37      57 ..      35      64 .. 0.67
   2 !   10.0   0.0   0.00034      0.67       1      33 [.      76     105 ..      76     110 .. 0.90
   3 !   24.6   0.0   8.1e-09   1.6e-05       2      43 ..     147     187 ..     146     188 .. 0.95
   4 !    5.4   0.0    0.0096        19      12      38 ..     218     241 ..     202     248 .. 0.81
   5 !   14.9   0.1   9.6e-06     0.019       1      20 [.     263     282 ..     263     300 .. 0.82
   6 ?    1.1   0.0      0.22   4.4e+02       1      20 [.     331     355 ..     331     373 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.3
   PF07646.10 14 iyvvGGahtdngllsssdlnvldpe 38
                 ++ +GG+    g+ +s+  ++ld +
  MMETSP0890-20130614|39316_1 37 LICFGGF----GGGYSNEAWLLDIR 57
                 6679999....66666666666654 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00034
   PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdln 33 
                  +r+ hs v  +g ++++GG+   n l  ++d++
  MMETSP0890-20130614|39316_1  76 RRAYHSGVEFNGNLIIFGGV---NQLTLLNDVW 105
                  68999999************...9999999998 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 8.1e-09
   PF07646.10   2 ryghsavvp..ggkiyvvGGahtdngllsssdlnvldpeknvWe 43 
                  r gh+a+++  ++ ++++GG+   +g++++ d +++++e++ W+
  MMETSP0890-20130614|39316_1 147 RQGHTASMIseNDAMLIIGGY---DGSEYLVDAWIFNFETQNWT 187
                  78999999999**********...*******************8 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0096
   PF07646.10  12 gkiyvvGGahtdngllsssdlnvldpe 38 
                  g  y++GG+   n+   ++d+ vl  +
  MMETSP0890-20130614|39316_1 218 GLAYIYGGY---NNQGCLGDIAVLAIG 241
                  567******...888888888887655 PP

  == domain 5    score: 14.9 bits;  conditional E-value: 9.6e-06
   PF07646.10   1 pryghsavvpggkiyvvGGa 20 
                  pryg +a+v++g iy++GG 
  MMETSP0890-20130614|39316_1 263 PRYGAAAAVYEGNIYIFGGT 282
                  8******************8 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.22
   PF07646.10   1 pryghsav.vp....ggkiyvvGGa 20 
                  pr+gh+++ ++    +++++v GG+
  MMETSP0890-20130614|39316_1 331 PRHGHAIAaTSgqgfQSCLVVTGGS 355
                  677887774448888999******9 PP

>> PF03089.9  Recombination activating protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.033        64      81     109 ..     140     166 ..     134     186 .. 0.77
   2 ?   -3.3   0.0       1.3   2.6e+03      81      96 ..     257     272 ..     254     288 .. 0.72
   3 ?    6.6   0.0    0.0012       2.4      75     111 ..     319     355 ..     300     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.033
    PF03089.9  81 vGdvPearyGhtinvvysrGktacvlfGG 109
                  +G  P+ r Ght +++  +    +++ GG
  MMETSP0890-20130614|39316_1 140 EGPRPNKRQGHTASMISENDA--MLIIGG 166
                  688899********9976543..333343 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
    PF03089.9  81 vGdvPearyGhtinvv 96 
                  +G  P +ryG +  v 
  MMETSP0890-20130614|39316_1 257 QGPAPMPRYGAAAAVY 272
                  6888999999877664 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0012
    PF03089.9  75 ctekelvGdvPearyGhtinvvysrGktacvlfGGrs 111
                   + ++++G  P +r+Gh+i     +G + c++  G s
  MMETSP0890-20130614|39316_1 319 PKRRNFTGARPIPRHGHAIAATSGQGFQSCLVVTGGS 355
                  567899********************88887665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.68
# Mc/sec: 1420.19
//
Query:       MMETSP0890-20130614|39320_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-16   59.5   0.0    3.4e-16   59.1   0.0    1.2  1  PF01926.18 50S ribosome-binding GTPase
    4.2e-10   39.0   0.0    5.3e-10   38.7   0.0    1.1  1  PF02421.13 Ferrous iron transport protein B
    1.6e-05   24.6   0.1       0.13   11.9   0.0    2.1  2  PF00350.18 Dynamin family
    0.00053   20.3   0.0      0.001   19.4   0.0    1.5  1  PF08477.8  Miro-like protein
     0.0071   16.2   0.0      0.012   15.5   0.0    1.3  1  PF13521.1  AAA domain
     0.0098   16.1   0.1      0.015   15.5   0.1    1.5  1  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.032   13.2   0.0    1.1  1  PF04548.11 AIG1 family
      0.086   11.4   0.2       0.16   10.6   0.0    1.5  2  PF03308.11 ArgK protein


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0     2e-19   3.4e-16       1      88 [.      59     145 ..      59     147 .] 0.86

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 2e-19
                  EEEEE--TT---HHHHHHHHCSTCTEETS-TT-SSSESEEEE.ETT.EEEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETT CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgekaakvsdypgtTrditenev.kke.kiilvDtPGiiegasedkeiegikkylekveradvlllvvdas 88 
                  ++a++G p vGKS+L+ aLt+   ++ + y +tT++ + +++  ++ +i+l+D+PGiiega+++k   + +++++ +++ad++l+v+da 
  MMETSP0890-20130614|39320_1  59 RIALIGFPSVGKSSLLSALTDT-ESEAAGYEFTTLTCIPGNLiMNGcRIQLLDLPGIIEGAAHGKG--RGREVIAVARTADLILIVLDAA 145
                  699*****************75.779***********8877644444688**************94..577899999***********54 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   3.1e-13   5.3e-10       2      89 ..      59     145 ..      58     147 .] 0.91

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 3.1e-13
                  EEEEE--TT---HHHHHHH----TB--------S--BB--EEETTEEEEEEE------SSSSSHHHHHHHHHHH.HH--SEEEEEEEGG CS
   PF02421.13   2 tvalvGnpnvGKttlfnaltgakqkvgNwpGvTVekkegklklkgkeveivDLPGiYsLsayseeekvardyll.eekpdviinvvDas 89 
                  ++al+G p vGK++l+ alt+++++ + +  +T     g+l ++g +++++DLPGi  ++  ++ +   r++++  +++d+i+ v+Da+
  MMETSP0890-20130614|39320_1  59 RIALIGFPSVGKSSLLSALTDTESEAAGYEFTTLTCIPGNLIMNGCRIQLLDLPGI--IEGAAHGKGRGREVIAvARTADLILIVLDAA 145
                  69*****************************************************9..566666777788888658899********97 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00017      0.28       1      29 [.      60      88 ..      60      95 .. 0.80
   2 !   11.9   0.0   7.4e-05      0.13     103     140 ..     106     146 ..     101     147 .] 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00017
                 EEEE--TT---HHHHHHH----------- CS
   PF00350.18  1 iavvGsqSaGKSSllnaLlgedilprgpg 29
                 ia++G  S GKSSll aL   +    g +
  MMETSP0890-20130614|39320_1 60 IALIGFPSVGKSSLLSALTDTESEAAGYE 88
                 899***************98776555555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 7.4e-05
                  EEEEE------------...HHHHHHHSTTEEEEEEEETTS CS
   PF00350.18 103 ltlvDtPGldsvnkrdq...elveeyikkadiilavtdanh 140
                  + l D+PG+ +++++ +     v + ++ ad+il v da +
  MMETSP0890-20130614|39320_1 106 IQLLDLPGIIEGAAHGKgrgREVIAVARTADLILIVLDAAK 146
                  789********9999988998999999**********9975 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.8e-07     0.001       1      84 [.      59     145 ..      59     147 .] 0.67

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.8e-07
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefpkkklpeeikgdtlavktlevdvdtellelwdlggr.......eelkkehelllkkadaillvydlt 84 
                  +++++G ++vGKsslls+l+  e +      e+++ t+    l++++ +  ++l dl g        + + +e + + ++ad il+v+d +
  MMETSP0890-20130614|39320_1  59 RIALIGFPSVGKSSLLSALTDTESE--AAGYEFTTLTCIPGNLIMNGCR--IQLLDLPGIiegaahgKGRGREVIAVARTADLILIVLDAA 145
                  799*****************99998..5566666666665555555555..5567777763333333333344444588999999998865 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.8e-06     0.012       1      29 [.      59      88 ..      59      96 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.8e-06
    PF13521.1  1 kivitGgpstGKTtlleaLaargypvv.pE 29
                 +i+++G ps+GK++ll+aL++++ + + +E
  MMETSP0890-20130614|39320_1 59 RIALIGFPSVGKSSLLSALTDTESEAAgYE 88
                 79*****************98754444344 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   9.1e-06     0.015      20      55 ..      54      89 ..      49     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.1e-06
    PF13191.1 20 segsplllvtGpsGiGKSsLlrelakpillerlrfa 55
                 ++g + + ++G + +GKSsLl +l ++   +++++ 
  MMETSP0890-20130614|39320_1 54 RSGDGRIALIGFPSVGKSSLLSALTDTESEAAGYEF 89
                 34444799***************8887777766555 PP

>> PF04548.11  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.032       2      93 ..      59     144 ..      58     147 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.8e-05
                  EEEEE-------TT---TTTTS--S-----------S-EEEEEEETTEEEEEEE--CGCCTTCHHCCHHHHHHHHHHHH-----EEEEEEE- CS
   PF04548.11   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlsl 93 
                  +i l+G   +GkS+   ++ +++        +  t +c   +   +g++i+  D Pg+++  ++ +   +e++    ++++  + +l+vl++
  MMETSP0890-20130614|39320_1  59 RIALIGFPSVGKSSLLSALTDTESEAAG--YEFTTLTCIPGNLIMNGCRIQLLDLPGIIEGAAHGKGRGREVIA---VART-ADLILIVLDA 144
                  6889999999999988777666543333..6778999*****************************99999995...4544.7888888875 PP

>> PF03308.11  ArgK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.4e-05      0.16      31      67 ..      59      96 ..      51     109 .. 0.75
   2 ?   -2.5   0.0      0.87   1.5e+03     131     150 ..     123     142 ..     114     145 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.4e-05
                 EE--B-------HHHHHH---.HHHH----EEEEEE-- CS
   PF03308.11 31 vvGltGvPGaGkstlveklik.elrrrGkrvavlavDP 67
                 ++ l G+P +Gks l+++l+  e  ++G+  + l   P
  MMETSP0890-20130614|39320_1 59 RIALIGFPSVGKSSLLSALTDtESEAAGYEFTTLTCIP 96
                 68899**************9614556677766666555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.87
                  ----HHHHHHTT-SS-EEEE CS
   PF03308.11 131 GvGqsevdiievadtvvlvt 150
                  G G   ++++++ad++++v+
  MMETSP0890-20130614|39320_1 123 GRGREVIAVARTADLILIVL 142
                  55666677888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.37s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 559.15
//
Query:       MMETSP0890-20130614|39335_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   10.9   6.7       0.12   10.2   4.6    1.2  1  PF02724.9 CDC45-like protein
          2    8.7   6.7       0.29   11.4   1.2    2.1  2  PF07536.9 HWE histidine kinase
          3    7.8   9.1       0.24   11.3   1.8    2.1  2  PF12279.3 Protein of unknown function (DUF3619)


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.6   2.6e-05      0.12     141     234 ..      30     129 ..      16     133 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.6e-05
    PF02724.9 141 seddeeeeessasekrksesdedeeddddeededeeqrkrsnessl..........akslrrrrrrereekeevlekyYaqgtsygesisllvYsLaselgred 234
                  ++++++++ ++a ++r + sded++d  d    +++ r+r+ es +          +++++ ++ ++ e++ +++++  +q  s++e +s++  +L++++ r++
  MMETSP0890-20130614|39335_1  30 NNEEKDDSLAQAWSSRRNRSDEDDQDCGD----RPRGRQRRLESARerqleavqeeEAAQQSQQLEADEANAAKIRSWLHQHPSFSEDLSIEALALVTKIRRAT 129
                  12222222222222222223222222222....3333333333333455667788777778888888999999**************************99986 PP

>> PF07536.9  HWE histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.56   2.6e+03      33      33 ..      59      59 ..      11      97 .. 0.59
   2 ?   11.4   1.2   6.3e-05      0.29      16      71 ..     141     196 ..     136     204 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.56
    PF07536.9 33 k 33
                 +
  MMETSP0890-20130614|39335_1 59 R 59
                 2 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 6.3e-05
    PF07536.9  16 iarqtlrsaesleefaeklsgRLqALsrahdlltreewagaeLaelleaelapyed 71 
                  +++ ++++a++l+++ ++ls+ L+ L ra + l r++ + + L+ +++++l+ +++
  MMETSP0890-20130614|39335_1 141 VVAASISQATDLDKLSASLSSSLTILERALTTLNRDSRQISALRTVVQRALQLIAQ 196
                  57788899*******************************************98765 PP

>> PF12279.3  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   5.3e-05      0.24      22      68 ..      60     108 ..      53     131 .. 0.64
   2 ?   -0.1   0.4      0.18   8.2e+02      82      82 ..     192     192 ..     128     237 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.3e-05
    PF12279.3  22 ppditeRLaaARraaLarkkaeakva..kvrvagaalagsggallergg 68 
                  p + ++RL++AR+++L++ ++e++++  +   a+ a+a+++ ++l+++ 
  MMETSP0890-20130614|39335_1  60 PRGRQRRLESARERQLEAVQEEEAAQqsQQLEADEANAAKIRSWLHQHP 108
                  556689**********998877755400333445555555555555433 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.18
    PF12279.3  82 a 82 
                   
  MMETSP0890-20130614|39335_1 192 Q 192
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1151  (0.0841867); expected 273.4 (0.02)
Passed bias filter:                      542  (0.0396431); expected 273.4 (0.02)
Passed Vit filter:                        57  (0.0041691); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.40s 00:00:01.00 Elapsed: 00:00:00.91
# Mc/sec: 629.37
//
Query:       MMETSP0890-20130614|39332_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-10   40.2   2.0      4e-10   39.4   1.4    1.4  1  PF01925.14 Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.19   11.3   0.7       0.47   10.1   0.5    1.6  1  PF01102.13 Glycophorin A


Domain annotation for each model (and alignments):
>> PF01925.14  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   1.4   5.9e-14     4e-10       3     111 ..      73     189 ..      70     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 5.9e-14
   PF01925.14   3 lagllaGflagltGfGggliavPlLll.l.lpppvavatsllavlvtslvg....alahrrk.g..nvdwrlllplllgallGallGallllllpskllkllfgvlllllallmll...rk 111
                  +++l+ G la+ +G+Ggg ++vP   l l + p++av++s +++l +++++     ++h+ k +   +d+ ++ +  +g llG+++G+ll   lp    ++++ ++l+l+  +  +   rk
  MMETSP0890-20130614|39332_1  73 AIILVFGSLAAGAGIGGGGLFVPTYWLcLgVGPKAAVPLSGATILGAAFGNfltlGWSHHPKaKrpVIDYEVATFTQPGELLGVVFGVLLNIILP----RIAIIIMLALILSYNSRrtiRK 189
                  567788999**************999977779999**9999888877776644445555444233468999998889******************....7777777755444442312222 PP

>> PF01102.13  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   6.9e-05      0.47      65      95 ..     160     190 ..     153     207 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.9e-05
   PF01102.13  65 vitliilgVmAGiigiillisYlirRliKks 95 
                  v+  iil  +A ii   l++sY +rR i+k 
  MMETSP0890-20130614|39332_1 160 VLLNIILPRIAIIIMLALILSYNSRRTIRKG 190
                  67789**********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      426  (0.0311586); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.34s 00:00:01.02 Elapsed: 00:00:00.75
# Mc/sec: 1086.35
//
Query:       MMETSP0890-20130614|39342_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00066   19.3   0.3      0.069   12.7   0.0    2.2  2  PF04755.7 PAP_fibrillin
  ------ inclusion threshold ------
      0.079   13.1   0.1       0.15   12.2   0.0    1.4  1  PF11173.3 Protein of unknown function (DUF2960)


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     1e-05     0.069       6      66 ..     110     169 ..     105     233 .. 0.79
   2 !    4.9   0.1    0.0025        17     174     188 ..     275     289 .]     269     289 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
    PF04755.7   6 kLldaisgterGlsassddraeieelvkklealnptpaplesldlLdGkWrLlYttskell 66 
                  + l+ i+g++  +++  d  +ei   v++l    p   ++  ++ + G+WrL+Y +s++ +
  MMETSP0890-20130614|39342_1 110 EILTIIEGKD-PIRRDYDGFDEIITKVEALLLTAPVDITTLTEENIVGEWRLAYASSSSFA 169
                  5556666666.555666667777777777777899999998899************99865 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0025
    PF04755.7 174 wLeitYlDedLRIsR 188
                   Le +YlD +LRI R
  MMETSP0890-20130614|39342_1 275 SLELVYLDSQLRIQR 289
                  599**********87 PP

>> PF11173.3  Protein of unknown function (DUF2960)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.2e-05      0.15      24      50 ..      58      85 ..      52      94 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
    PF11173.3 24 hdiyeAvAa.aEGiDlteflamekqvea 50
                  ++++AvAa aEGiD+  f+++   ++ 
  MMETSP0890-20130614|39342_1 58 VTMFNAVAAgAEGIDIDGFVELCSRIDD 85
                 579***98769********998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.74
# Mc/sec: 935.87
//
Query:       MMETSP0890-20130614|39346_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-12   46.2   0.0    6.4e-12   45.3   0.0    1.4  1  PF13901.1 Domain of unknown function (DUF4206)
  ------ inclusion threshold ------
       0.07   12.9   1.5        1.2    8.9   0.1    3.0  3  PF11040.3 Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus


Domain annotation for each model (and alignments):
>> PF13901.1  Domain of unknown function (DUF4206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   9.4e-16   6.4e-12       3     139 ..     596     739 ..     594     744 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 9.4e-16
    PF13901.1   3 CeysgkyyCs.sChkndksviParilenwdfkkypvskaakellesieekplldlkelnpslykkvkeLakvrelrkklkllkeylk.tCreaee.....ekkelkqsreyll.eeaelysladLvevkkgkllesleelikkae 139
                  C+  + + C+  Ch+ d+ v+P r +   d+k+++v++aa ++l++ + +pll++  + +++++ +++++++r+lr  l  +++  + + r  ++       ++l +sr +l+ ++ +++sl+dL++ ++g+l++ ++++i+ a+
  MMETSP0890-20130614|39346_1 596 CRLLDVLVCTkRCHSGDRRVLPWRAVLCGDLKPHRVCRAAAAFLDARRYEPLLKVPPT-AAIFRINPSVDAARQLRILLAEIRTDATlHGRVGATqasrlLISKLGASRIHLAiNSPQFWSLQDLIDASQGHLISIMSDIIADAN 739
                  888888999636*******************************************976.67999***************99986433123322220000133345689999852789*********************9998765 PP

>> PF11040.3  Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.04   2.7e+02      32      61 ..      84     113 ..      76     143 .. 0.80
   2 ?   -2.7   0.0      0.73     5e+03      22      38 ..     447     463 ..     443     475 .. 0.73
   3 ?    8.9   0.1   0.00018       1.2      14      52 ..     493     531 ..     487     566 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.04
    PF11040.3  32 etqkphdvtsssyasgttvassYrpPapll 61 
                  e +   d +  s a   + + sY  Pa+++
  MMETSP0890-20130614|39346_1  84 ENNTLSDAADDSTADTVAITPSYEVPANSV 113
                  55667899999999999**********974 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.73
    PF11040.3  22 LLrddeesdeetqkphd 38 
                  L  dd  +dee ++ h 
  MMETSP0890-20130614|39346_1 447 LFVDDSYADEERNRSHT 463
                  67799999999888875 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00018
    PF11040.3  14 PrrggLeaLLrddeesdeetqkphdvtsssyasgttvas 52 
                  P   gLe+++ +d++sd++   +   +sss a  t +a 
  MMETSP0890-20130614|39346_1 493 PSLSGLESVIYNDDDSDDDQDGQIYSASSSMANLTPAAK 531
                  6678****************************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.11u 0.38s 00:00:01.49 Elapsed: 00:00:00.94
# Mc/sec: 1962.97
//
Query:       MMETSP0890-20130614|39362_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      249  (0.0182124); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 318.27
//
Query:       MMETSP0890-20130614|39367_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.32s 00:00:00.62 Elapsed: 00:00:00.61
# Mc/sec: 326.06
//
Query:       MMETSP0890-20130614|39359_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-06   25.1  15.9     0.0041   15.8   3.2    2.3  2  PF06398.6 Integral peroxisomal membrane peroxin
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.22   11.1   0.0    1.6  1  PF11411.3 DNA ligase IV


Domain annotation for each model (and alignments):
>> PF06398.6  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.5   1.1e-06    0.0078     290     359 .]     164     241 ..     156     241 .. 0.76
   2 !   15.8   3.2     6e-07    0.0041     296     359 .]     446     525 ..     395     525 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-06
    PF06398.6 290 psgvdhledvkpPe.dWeWvekkkWrlDlepdewve......eteekdGWvYddnkw....keest.edglskytRRRrwiR 359
                  p+ ++ ++  ++P+ +W+W     W+lD+ + +  +      + + +  W+Y  n+w     ++ + +++ + ++R RrwiR
  MMETSP0890-20130614|39359_1 164 PNVAKIPDAQQLPDtTWRWLS--PWQLDSRVHGSDRlclddeNASPE-DWLYA-NSWpskpDQPYVrTQQAEHKVRCRRWIR 241
                  5555667778999999****9..8*****977776699887522223.5****.7763333567778999***********9 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 6e-07
    PF06398.6 296 ledvkpPedWeWvekkkWrlDlepdewve..........eteekd.........GWvYddnk...wkeest.edglskytRRRrwiR 359
                    d  +P++W+W+    W +D+ + ++ +          +              GW+Y   +    +++ + + + + ++R Rrw+R
  MMETSP0890-20130614|39359_1 446 VLDSALPDGWRWIS--PWVIDSLSFGADRtltdalnvddD----FqrgtsnivdGWIYA-FDwpaSNHGYKpKPDNRCFVRCRRWVR 525
                  556789********..8*****766665577788755440....1456667999****9.33244677777888999*********9 PP

>> PF11411.3  DNA ligase IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.2e-05      0.22      15      32 ..     253     270 ..     253     274 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.2e-05
    PF11411.3  15 DSYtvDtdeqqLkdVFhr 32 
                  DS  vDt e++L +VF r
  MMETSP0890-20130614|39359_1 253 DSLLVDTNEASLETVFLR 270
                  999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      216  (0.0157987); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.37s 00:00:01.26 Elapsed: 00:00:01.00
# Mc/sec: 1377.91
//
Query:       MMETSP0890-20130614|39369_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.43s 00:00:00.80 Elapsed: 00:00:00.80
# Mc/sec: 299.54
//
Query:       MMETSP0890-20130614|39371_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-39  133.2   0.0    9.7e-39  133.0   0.0    1.0  1  PF01430.14 Hsp33 protein
  ------ inclusion threshold ------
      0.029   14.5   0.2       0.24   11.6   0.1    2.4  3  PF03448.12 MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> PF01430.14  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   1.4e-42   9.7e-39      82     279 ..       2     206 ..       1     207 [. 0.88

  Alignments for each domain:
  == domain 1    score: 133.0 bits;  conditional E-value: 1.4e-42
   PF01430.14  82 dgkvRgyarlarnpevelapanedvkellgkGylavtid...pge..gepYqGiVpleggelaedleeYfaqSeQlptavrlavkvdedee...vkragGlllQlLPgaeedeeawerleella.....tlkseelldeglsaeellkrlfheeevrilee.qpvrfkCsCsrervaeaLaslgkeeleeileedgkievtCefCgkkYefd 279
                  + ++Rgy+    np+++l + + +v++++gkG+l +++    pge   +p+++iV++e+ge+aed+++Y a+SeQ + a++ +v++ ++ e   v++++G  ++lLPga   ++  ++l ++++      l s+++  +g++ e++  rl+++ e++ile+   ++f C+Cs+erv ++La l+++e+++i+++++kie++CefC k Y+++
  MMETSP0890-20130614|39371_1   2 NLQMRGYV---GNPQLDLPE-A-SVGTAVGKGQLKIVRLknlPGEerASPFSSIVAIETGEIAEDINSYVATSEQREGALGAGVAFFDNIEggaVACSTGWRVELLPGA--PDQVAQHLLRNVQaflglGLSSTDMRLRGETCEDIALRLLDGMEPEILESdARPTFFCQCSNERVYRTLALLPRDEIRQIIAQNEKIEARCEFCAKLYSMT 206
                  579*****...9*****955.4.7************9952334448899***********************************9987655678***************..5555555555555555597777778889************9999******899*********************************************986 PP

>> PF03448.12  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   1.4e+03      10      39 ..      35      64 ..      32      69 .. 0.76
   2 ?   -2.1   0.0      0.65   4.4e+03      67      84 ..      99     116 ..      97     119 .. 0.67
   3 ?   11.6   0.1   3.5e-05      0.24      13      78 ..     153     219 ..     139     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.21
                 CCCS-HHHHHHHHHHS-HHHHHHHHCTS-C CS
   PF03448.12 10 leeldeeeraallrllpkeeaaevleelse 39
                 l++l+ eera  ++ +   e +e+ e++++
  MMETSP0890-20130614|39371_1 35 LKNLPGEERASPFSSIVAIETGEIAEDINS 64
                 678888888888888888888888777665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.65
                  HHHHCCCHCCHHHHHHHC CS
   PF03448.12  67 vdlleelpeekveellsa 84 
                  v+ll   p+++++ ll++
  MMETSP0890-20130614|39371_1  99 VELLPGAPDQVAQHLLRN 116
                  667777777777777765 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 3.5e-05
                  S-HHHHHHHHHHS-HHHHHHHHCTS-CC.CCCHCCCCS-HHHHHHHHCTS-HHHHHHHHCCCHCCHH CS
   PF03448.12  13 ldeeeraallrllpkeeaaevleelsed.lqeeliealpdeelaelleeldsDdavdlleelpeekv 78 
                  l+++ r +++ ++++e+   +l+ l+ d +++ + ++ + e   e+ ++l+s  avd+ ++l+e ++
  MMETSP0890-20130614|39371_1 153 LESDARPTFFCQCSNERVYRTLALLPRDeIRQIIAQNEKIEARCEFCAKLYSMTAVDVANHLDEVDA 219
                  678899999*****************6615555555556666779*************888887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.39s 00:00:00.90 Elapsed: 00:00:00.93
# Mc/sec: 595.22
//
Query:       MMETSP0890-20130614|39376_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-15   55.5   0.0    6.8e-15   54.8   0.0    1.4  1  PF10294.4  Putative methyltransferase
     0.0054   17.1   0.0      0.012   16.0   0.0    1.6  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
      0.039   13.2   0.0       0.06   12.6   0.0    1.3  1  PF03602.10 Conserved hypothetical protein 95
      0.091   12.0   0.1       0.16   11.2   0.1    1.3  1  PF05175.9  Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0     2e-18   6.8e-15       4     164 ..     128     268 ..     125     278 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 2e-18
    PF10294.4   4 ekeLkieedtgnsvgrvvWdaavvlskylekklakelgsnelsglsvlELGsGtGlvGiavalllpeakviltDleellellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketkilvaykkrreae 164
                  ++  +i e+ g   g++vW+ ++ l+ yl +          l+g+++lELG+G+Glv + + +   +a+v+ t  + +l  l++n           ++++++d   +     +  +ev l++aaD++Y  ++  +L++tL++ ++ + ++++a+ +r  + 
  MMETSP0890-20130614|39376_1 128 SHRFEIIEEFGAATGAHVWNGSICLALYLCTL--------PLDGVKMLELGAGCGLVSLLASSR--GANVLATEHSSALSALQNNCGS-------FCRIEPFDFSRND--SACLFNEVTLVVAADVLYAPSAALDLAATLQHYSSIS-SFIIAHTQRPAST 268
                  5678999***********************95........48899**************99999..9****************99877.......7999*****8876..334445699***********************99887.6777888885544 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-06     0.012       3      45 ..     164     203 ..     162     267 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.4e-06
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarena 45 
                   + l+lG+G G++sl +++  +ga+v++ + s +  +l + n+
  MMETSP0890-20130614|39376_1 164 VKMLELGAGCGLVSLLASS--RGANVLATEHSSALSALQN-NC 203
                  578****************..*********9987655544.44 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05      0.06      41     101 ..     161     219 ..     154     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
   PF03602.10  41 legarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlreda 101
                  l+g+++L+l aG G ++l A SRga+ v++ e ++ a+++l++n+ ++   e ++  r+d+
  MMETSP0890-20130614|39376_1 161 LDGVKMLELGAGCGLVSLLASSRGAN-VLATE-HSSALSALQNNCGSFCRIEPFDFSRNDS 219
                  678999******************65.55555.5678899999987776444566655555 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.5e-05      0.16      18      73 ..     147     201 ..     131     208 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.5e-05
                  ---HHHHHHS-TT..------B-------HHHHHHHH-TT----EEESBHHHHHHHHH CS
    PF05175.9  18 aGselLletlpkk..lagkvlDlGcGaGvlgaalakespelevtlvDinarAvesaka 73 
                  +Gs  L+ +l +    + k+l+lG+G G++++ +++++ +  v +++ + +A+++ ++
  MMETSP0890-20130614|39376_1 147 NGSICLALYLCTLplDGVKMLELGAGCGLVSLLASSRGAN--VLATE-HSSALSALQN 201
                  6666676666665546778***************999999..55554.4456655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       396  (0.0289643); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:01.29
# Mc/sec: 577.73
//
Query:       MMETSP0890-20130614|39404_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-05   23.6   0.0    2.1e-05   23.6   0.0    1.1  1  PF01593.19 Flavin containing amine oxidoreductase
     0.0068   16.2   0.0     0.0096   15.8   0.0    1.2  1  PF13450.1  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.14   12.0   0.0    1.3  1  PF10280.4  Mediator complex protein


Domain annotation for each model (and alignments):
>> PF01593.19  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.7e-09   2.1e-05      19      63 ..       1      44 [.       1      78 [. 0.82

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.7e-09
                 EEESSS-------EEE---..-EEE----EE-TTTCH.HHHHHHHH CS
   PF01593.19 19 vlEArdrvGGRirtfrskgdgylielGamwftgvygn.llnlllel 63
                 vlE++d +GGRi t+ +   g ++e Ga  ++g  +n   +ll e 
  MMETSP0890-20130614|39404_1  1 VLEGSDVLGGRIKTIDLH--GIKCEAGAEFIHGKIENqIVSLLEEE 44
                 9****************5..99**********98887555555554 PP

>> PF13450.1  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-06    0.0096      24      66 ..       1      42 [.       1      43 [. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-06
    PF13450.1 24 vlekrdrlGGraasvevdgirvdygahifhgsgyyenlrrllr 66
                 vle  d lGGr+++++ +gi+++ ga  +hg +  +++ +ll+
  MMETSP0890-20130614|39404_1  1 VLEGSDVLGGRIKTIDLHGIKCEAGAEFIHG-KIENQIVSLLE 42
                 78999*************************9.56677777766 PP

>> PF10280.4  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.1e-05      0.14      10      32 ..      32      54 ..      31      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHHHHHHHHHH---T CS
    PF10280.4 10 eIDkdIvslLesagqaieeLsse 32
                 +I+++IvslLe+ g a++eL  +
  MMETSP0890-20130614|39404_1 32 KIENQIVSLLEEEGYALRELVWP 54
                 7******************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.33s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 305.62
//
Query:       MMETSP0890-20130614|39411_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-07   30.9   1.8      7e-05   22.4   0.2    3.2  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.26   10.7   0.0    1.5  1  PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.025   1.7e+02       7      34 ..      11      54 ..       6      57 .. 0.81
   2 !   22.4   0.2     1e-08     7e-05      10      39 .]      75     104 ..      66     104 .. 0.91
   3 !    4.0   0.0    0.0067        46      12      29 ..     141     158 ..     133     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.025
                 EESSSSSEEEEEEESS................STEEEEEETTSE CS
   PF00400.27  7 lrgHtspVtcvafspd................gpllasgSrDgt 34
                 l+ H + V ++  +p                 ++l+a++  D t
  MMETSP0890-20130614|39411_1 11 LEPHRGLVASLHAHPAahpgtqsrirdvhnrrRSLVATAAVDWT 54
                 66788888888888888888888888888899999999999988 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1e-08
                  SSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  10 HtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  H  +V+++ +sp+  +lla++ +Dg ++lW+
  MMETSP0890-20130614|39411_1  75 H-VTVSACQWSPSrASLLATATSDGYVYLWN 104
                  4.89**************************7 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0067
                  SSEEEEEEESSSTEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasg 29 
                  ++ +c+++++d+++++ g
  MMETSP0890-20130614|39411_1 141 AALNCLDYAQDSKHILVG 158
                  5679***********988 PP

>> PF12894.2  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.8e-05      0.26      13      37 ..      77     102 ..      62     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.8e-05
    PF12894.2  13 rvkfiswcPtm.DLiAlatekgelal 37 
                  +v++++w+P+   L+A+at++g ++l
  MMETSP0890-20130614|39411_1  77 TVSACQWSPSRaSLLATATSDGYVYL 102
                  499******9647*********8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.68
# Mc/sec: 785.86
//
Query:       MMETSP0890-20130614|39414_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-44  149.3   0.0    1.3e-43  148.9   0.0    1.2  1  PF00443.24 Ubiquitin carboxyl-terminal hydrolase
    3.6e-22   79.0   0.0    2.7e-18   66.3   0.0    2.9  2  PF13423.1  Ubiquitin carboxyl-terminal hydrolase
    3.6e-19   67.8   0.5    1.1e-08   34.5   0.0    2.4  2  PF00627.26 UBA/TS-N domain
    6.4e-08   32.4   0.0    1.8e-06   27.8   0.0    2.3  2  PF02148.14 Zn-finger in ubiquitin-hydrolases and other protein


Domain annotation for each model (and alignments):
>> PF00443.24  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   3.7e-47   1.3e-43       2     272 .]     186     702 ..     185     702 .. 0.91

  Alignments for each domain:
  == domain 1    score: 148.9 bits;  conditional E-value: 3.7e-47
                  ----------THHHHHHHHHHHTSHHHHHHHHTTHCCH....H-TTHHTTTHHHHHHHHHHHHH..................................--HHH-SSS---HHHHHHHHHHBGGGGGCTTS-HHHHHHHHHHHHHHHHHHHCCHHHHSTTS-....-SCHHHHC-EEEEEEEEETTCEEE..............................................................................EEEECCB-SEEEEEEE-EEEETTTTEEEE-----B--SEEE-GGGBSCHHH.......................................................................................................................................................--BTTSSCEEEEEEEEEE--.-TT---EEEEEESS-TT-EEEEETTEEEEE-HHHHTTCEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................................................................................................................xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00443.24   2 gvtGleNlGntCYmnsvlQcLvsipelrdyllryeervaeineeneleeeaqlaraladlfkkl..................................venssekkavsPsefkktlkkineqfsgykQqDahEfllflLdqlhedlnrlnkkektekqkaedsndslitdlfkgqlksrlkclecknv..............................................................................kvklkrlPeiLiihlkRfkyseerssnkKlnekvefpleLdlssyvneekk.......................................................................................................................................................eeseskpkkYeLvavvvHsG.slssGHYvayvknneknkWlkfdDetvtevkeeevlkesaYvlfY 272
                  g++Gl+NlGn+CYmnsv+Q L+   ++++++++   ++a      + +++ +l+ + a+++++l                                  +  + +++ +sP+ fk++++ ++ +fs+ +QqDa E+++ +L+ l ++ ++++++                 +lf + l++r +c + k v                                                                              +++l++ P++L+i+l+R++ + +++ +kKl+ +v++p+ Ld+s + + + +                                                                                                                                                         ++s+ +kY+Lv++++H+G + +sGHYva+++ +   +++ fdDe+v ++ +     + +Y+++Y
  MMETSP0890-20130614|39414_1 186 GLIGLVNLGNSCYMNSVVQLLLASTPIAQRYNSSIIQQA---IAAQTNPSSDLLLQTAKILSALnsdryakpssllleesgqvlsnseyttksrlsthIATKIKAARISPRTFKAAFGNNHIEFSTGQQQDAAEYFSWILELLTRAEHATSPN------------GTSSARLFTFGLEERTECTTSKLVryrdstntridlpvpvpeegphpkrtkvtddndiipndqsiknmlhisfescvaawiadsyvedfystaikrkgpakrRTRLSSNPPFLVIKLNRYYVDLNTWEPKKLDVRVQMPEILDISDFKAPQHPadegllpeddeaptsnssalipddsilnqlvamgfdengcrraciatnnagaeaamewvlthssdpdfsspiiaqsttpmksgpdetavaemaslgftpdqaraaltacdgskeraadwlfshmddldaacaavmgaggvtpatsaqsipdIDNTSDCTKYSLVGFISHIGkNTGSGHYVAHIR-KPGHGFVIFDDEKVAQSRK--PPLDLGYIYLY 702
                  689****************************99998885...2445555555555555555555555555555555555555555557777777887766777788889999***********************************998874............556789**************99999***************************************************************************************************************************98776******************************************************************************************************************************************************9999******************************.88999*********98885..55557899888 PP

>> PF13423.1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00045       1.5       2      25 ..     189     212 ..     188     248 .. 0.90
   2 !   66.3   0.0   7.9e-22   2.7e-18      66     295 .]     295     686 ..     280     686 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00045
    PF13423.1   2 GlennlnncYlnaLLqllfftldl 25 
                  Gl n +n cY+n++ qll ++ ++
  MMETSP0890-20130614|39414_1 189 GLVNLGNSCYMNSVVQLLLASTPI 212
                  9*****************998776 PP

  == domain 2    score: 66.3 bits;  conditional E-value: 7.9e-22
    PF13423.1  66 llralstipeaaalgeqqdvqeanrFileqlslelltlkvdifhererdkseaesslselfgtklisqnrciscqaekvkeesllnlelpyppsek..........................giklenileeslnseknkeikcesckkkssaevakkftslPpiLgIclkrynek.efg.akrlntkvdiplelrlphf.....................................................................................................................................................iqddeqenekplsgefkyeLqavVchigdsltsghlvSlirvaeseksqWylFnDfrv 295
                  + +a++++  ++  g+qqd +e +  ile l +    + ++            ++s   lf ++l++ + c+ ++  + + ++++  +lp+p  e+                          +i++e++    ++   ++   +   k+k +a+ + +++s Pp L+I+l+ry ++ + + +k+l+ +v++p+ l+++ f                                                                                                                                                     ++++++ +  ++s   ky+L+++++hig++  sgh+v++ir+   +   +++F+D+ v
  MMETSP0890-20130614|39414_1 295 FKAAFGNNHIEFSTGQQQDAAEYFSWILELLTRAEHATSPN------------GTSSARLFTFGLEERTECTTSKLVRYRDSTNTRIDLPVPVPEEgphpkrtkvtddndiipndqsiknmlHISFESCVAAWIADSYVEDFYSTAIKRKGPAKRRTRLSSNPPFLVIKLNRYYVDlNTWePKKLDVRVQMPEILDISDFkapqhpadegllpeddeaptsnssalipddsilnqlvamgfdengcrraciatnnagaeaamewvlthssdpdfsspiiaqsttpmksgpdetavaemaslgftpdqaraaltacdgskeraadwlfshmddldaacaavmgaggvtpaTSAQSIPDIDNTSDCTKYSLVGFISHIGKNTGSGHYVAHIRK---PGHGFVIFDDEKV 686
                  678999999899*******************9999999984............88889999999999999977777776666555555555553344467788999*****************************89999899999******************************99999********************************************************************************************************************************************************************99996666666666999****************99***********...4558******987 PP

>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   3.1e-11     1e-07       2      36 ..     511     546 ..     510     547 .. 0.95
   2 !   34.5   0.0   3.3e-12   1.1e-08       2      37 .]     573     608 ..     572     608 .. 0.97

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 3.1e-11
                  THHHHHHHHH----HHHHHHHHHHTTT.SHHHHHHH CS
   PF00627.26   2 deeaiqqLreMGfsreeakkALratnn.nvErAvey 36 
                  d++++ qL++MGf+++ +++A+ atnn   E+A+e+
  MMETSP0890-20130614|39414_1 511 DDSILNQLVAMGFDENGCRRACIATNNaGAEAAMEW 546
                  67899******************************* PP

  == domain 2    score: 34.5 bits;  conditional E-value: 3.3e-12
                  THHHHHHHHH----HHHHHHHHHHTTTSHHHHHHHH CS
   PF00627.26   2 deeaiqqLreMGfsreeakkALratnnnvErAveyL 37 
                  de a++++  +Gf+ ++a+ AL a++++ ErA+++L
  MMETSP0890-20130614|39414_1 573 DETAVAEMASLGFTPDQARAALTACDGSKERAADWL 608
                  899********************************9 PP

>> PF02148.14  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.3e-10   1.8e-06       1      58 [.      56     127 ..      55     135 .. 0.85
   2 ?    2.0   0.0     0.061   2.1e+02      25      43 ..     661     680 ..     643     685 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.3e-10
   PF02148.14   1 CseCnsenknlWlCLkCghvgCgrks........nghalkHyeetg..Hplavdlstls.....vycyscdde 58 
                  C  ++ + +nlWl+L+ g+vg gr++        ++ al H+++tg  +pl+v+l+t+s     v++y+ d+ 
  MMETSP0890-20130614|39414_1  56 CGLSGDT-ENLWLNLSTGYVGGGRDQsafggpkgSNGALIHFQQTGskYPLVVKLGTISkaggeVFSYAPDED 127
                  4444445.9****************9******98799******98888****************999998664 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.061
   PF02148.14  25 ks.nghalkHyeetgHplav 43 
                  +  +gh   H +++gH +++
  MMETSP0890-20130614|39414_1 661 NTgSGHYVAHIRKPGHGFVI 680
                  33359***********8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      228  (0.0166764); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.27s 00:00:01.30 Elapsed: 00:00:01.08
# Mc/sec: 1566.51
//
Query:       MMETSP0890-20130614|39422_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.1   0.5        0.3   10.7   0.1    2.0  2  PF09006.6  Lung surfactant protein D coiled-coil trimerisation
       0.14   11.5   3.0       0.24   10.8   2.0    1.3  1  PF01025.14 GrpE


Domain annotation for each model (and alignments):
>> PF09006.6  Lung surfactant protein D coiled-coil trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   4.4e-05       0.3       5      26 ..     159     180 ..     155     183 .. 0.94
   2 ?   -2.8   0.0      0.73     5e+03      17      24 ..     193     200 ..     189     201 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.4e-05
                  HHHHHHH---HHHHHHHHHHHH CS
    PF09006.6   5 rQqveaLegqlqrLqaafsqYk 26 
                  rQ+   Le +l+  q  fsqYk
  MMETSP0890-20130614|39422_1 159 RQRCAELEAKLKVSQDEFSQYK 180
                  9********************9 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.73
                  HHHHHHHH CS
    PF09006.6  17 rLqaafsq 24 
                  rL+ af++
  MMETSP0890-20130614|39422_1 193 RLESAFAR 200
                  9*****86 PP

>> PF01025.14  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   3.5e-05      0.24       9      92 ..     143     229 ..     120     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.5e-05
   PF01025.14   9 eeedeeeeleeeleeleeevkelkdkllrllaefenlrkrtekekeeakkyaiekflkelL..pvlDnleralkaak.eseevesll 92 
                  + + e ++l+   e  +++++el+ kl+ ++ ef +++ r     ++++++ ++ f+++l    ++D+l r + +++ +++++++l+
  MMETSP0890-20130614|39422_1 143 SPKVEVAALAFAAECSRQRCAELEAKLKVSQDEFSQYKARSTAAAQHLASRLESAFARALAaeAACDALRRSILSGQtDNDQIQELV 229
                  33333444444455588899***************************************9833589999999988876666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       709  (0.0518578); expected 273.4 (0.02)
Passed bias filter:                      399  (0.0291837); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.86
# Mc/sec: 824.79
//
Query:       MMETSP0890-20130614|39436_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-19   69.3   0.0    5.2e-19   68.2   0.0    1.5  1  PF01926.18 50S ribosome-binding GTPase
    9.5e-06   25.0   0.0    9.4e-05   21.8   0.0    2.1  1  PF00009.22 Elongation factor Tu GTP binding domain
    5.6e-05   22.5   0.0       0.09   12.0   0.0    2.3  2  PF02492.14 CobW/HypB/UreG, nucleotide-binding domain
    0.00018   21.2   0.5     0.0089   15.7   0.0    2.7  3  PF00350.18 Dynamin family
    0.00018   20.6   0.0    0.00034   19.7   0.0    1.5  1  PF09439.5  Signal recognition particle receptor beta subunit
      0.003   16.6   0.0      0.029   13.4   0.0    2.0  2  PF00025.16 ADP-ribosylation factor family
     0.0081   15.2   0.0      0.031   13.3   0.0    2.3  1  PF02421.13 Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.038   14.2   0.2      0.093   12.9   0.1    1.6  1  PF13191.1  AAA ATPase domain
      0.044   14.1   0.0      0.093   13.1   0.0    1.7  1  PF08477.8  Miro-like protein
      0.067   12.7   0.0       0.13   11.8   0.0    1.5  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
       0.23   10.8   5.7       0.27   10.6   1.5    2.4  2  PF02151.14 UvrB/uvrC motif
       0.62   10.4   4.4       0.64   10.3   1.1    2.3  2  PF13600.1  N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.6e-22   5.2e-19       2      93 ..      60     160 ..      59     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 4.6e-22
                  EEEE--TT---HHHHHHHHCST...CTEETS-TT-SSSESEEEE....ETTE....EEEEE---SSSHHHHHHHHHHHHHHHHHHCTSSEEEEEEETTS.HHHH CS
   PF01926.18   2 vaivGrpNvGKStLinaLtgek...aakvsdypgtTrditenev....kkek....iilvDtPGiiegasedkeiegikkylekveradvlllvvdasa.vlke 93 
                  +a+vG+ N+GKS+L++aL+ e+    ++v d p+ T+d+ ++++    +        +lvDt G++ + + +  +  ++ +le+v+ ad+l++v+das  ++ +
  MMETSP0890-20130614|39436_1  60 IALVGYFNSGKSSLFRALCTEDqshSVIVDDRPFATLDPRTRRIqigtP--DaattALLVDTVGFVAKLPTQV-SAAFRATLEEVRAADILVHVLDASVsPQVA 160
                  89*****************64334488************6656555541..1344458********9999998.568999****************66544433 PP

>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.2e-08   9.4e-05       5     182 ..      59     236 ..      55     242 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.2e-08
                  EEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GG.GHHHHHHH.......HHT-SEEEEEEETTS-.......S-HHHHHHHHHHHHTT--EEEEEE-TTST.CHHHHHHHHHHHHHHHHHCTTGCTCGEEEEEE-STCCHHHHHHHHHH CS
   PF00009.22   5 nigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvd.Fskevirg.......lrvlDgavlvvdaveG.......vepqTeevlrlakklgvkiivviNKiDrv.eaeleeiveelkekllekylekgeeevpvvpgSalkgegidaLleai 182
                  +i+++g  ++GK++l  al ++ +  s    +++       + + r r i i +  +        ++  l+Dt G v     +v+++       +r++D+ v v+da+              +e+  l+ +  +++i++ NK+D +  a ++ + +++ ++     + ++++   +v gS+ +gegi++L +a+
  MMETSP0890-20130614|39436_1  59 TIALVGYFNSGKSSLFRALCTEDQSHSV--IVDDR---PFATLDPRTRRIQIGTPDA-------ATTALLVDTVGFVAkLPTQVSAAfratleeVRAADILVHVLDASVSpqvarrrASIVEKELSSLLGDFPLPRIIFYNKLDAMpSAAADSLRRKAISRS----TKNRKKFPDIVLGSCHTGEGIQELRNAL 236
                  6788888888888888888855543222..32222...2222233344443333333.......344678899998765666676666666666899***********884444443444556777778888899*********996555555555544444....334444667**************99887 PP

>> PF02492.14  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0     0.001       1.2       1      36 [.      58      90 ..      58     105 .. 0.85
   2 !   12.0   0.0   7.9e-05      0.09      85     173 ..     112     212 ..      93     216 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.001
                 EEEEEE-------HHHHHHHHCHS---S-EEEEES- CS
   PF02492.14  1 pvtvltGflGsGKTtLleklleknreglkiaVivnd 36
                 p++ l+G+  sGK++L ++l+   +e+++  Viv d
  MMETSP0890-20130614|39436_1 58 PTIALVGYFNSGKSSLFRALC---TEDQSHSVIVDD 90
                 56889****************...457899999988 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 7.9e-05
                  -SEEEEE----SG..GGGH.HHHSHHHHHHEEE-EEEEEEETTTH........CHHHHHHHHHHHHHCT-SEEEEE-CCCTTTT...HHHHHHHHHHH-TT CS
   PF02492.14  85 ldvlliEttGlae..papl.tfteeelksdlgldavvtvvdvknl........tegedkpekledqlaaAdlivlnKiDlldae.adlekleedlrklnpe 173
                    +ll+ t+G +   p+++ +    +l++   +d +v v+d++          +  e++   l   +    +i  nK D ++++ ad  + +++ r+ +++
  MMETSP0890-20130614|39436_1 112 TTALLVDTVGFVAklPTQVsAAFRATLEEVRAADILVHVLDASVSpqvarrraSIVEKELSSLLGDFPLPRIIFYNKLDAMPSAaADSLRRKAISRSTKNR 212
                  5689******5551255554444999999*************55599998887445555556666789999***********9977766666666666555 PP

>> PF00350.18  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.8     2e+03      50      80 ..      23      53 ..      11      58 .. 0.65
   2 !   15.7   0.0   7.8e-06    0.0089       1      29 [.      60      86 ..      60     103 .. 0.83
   3 ?    2.7   0.0     0.074        84     104     142 ..     115     157 ..     100     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.8
                 -----E-EET-----CHHHHHHHHHHH---- CS
   PF00350.18 50 avkeevkeeekkledfdevreeieketekla 80
                 + k  ++   ++ ++++++r+  e+  ++ +
  MMETSP0890-20130614|39436_1 23 DKKSLQARAARLRDKINALRKHRERTRDRRQ 53
                 3444445557788888888888888877776 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.8e-06
                 EEEE--TT---HHHHHHH----------- CS
   PF00350.18  1 iavvGsqSaGKSSllnaLlgedilprgpg 29
                 ia+vG +++GKSSl  aL+ ed   +++ 
  MMETSP0890-20130614|39436_1 60 IALVGYFNSGKSSLFRALCTED--QSHSV 86
                 89*****************999..44444 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.074
                  EEEE------.------....HHHHHHHSTTEEEEEEEETTS-S CS
   PF00350.18 104 tlvDtPGlds.vnkrdq....elveeyikkadiilavtdanhdl 142
                   lvDt G+    +++        + e ++ adi+++v da+++ 
  MMETSP0890-20130614|39436_1 115 LLVDTVGFVAkLPTQ-VsaafRATLEEVRAADILVHVLDASVSP 157
                  499999997633333.3588999999999***********9864 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     3e-07   0.00034       3      98 ..      57     166 ..      55     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3e-07
                  --EEEEE--TT---HHHHHHHHHSS-------S.S-EEETT-...........-----EEEE----G.GGGHHHHHHHHHHGG.B--...-EEEEETTS-TT--HHHHHH CS
    PF09439.5   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv........ksekgkkltliDfPGhe.klrqklleklkakss.lkg...lvfvvDStidpkevkevAEl 98 
                  +p++ lvG  +sGK slf  L t+   ++v+    + a+l+         + +  ++  l+D  G + kl ++++  ++a  + +++   lv+v+D+++ p+ ++  A  
  MMETSP0890-20130614|39436_1  57 TPTIALVGYFNSGKSSLFRALCTEDQSHSVIVDdRPFATLDPrtrriqigTPDAATTALLVDTVGFVaKLPTQVSAAFRATLEeVRAadiLVHVLDASVSPQVARRRASI 166
                  68999*******************999999888677777776666667766777888889*****86589998887655433324443339*********9988887765 PP

>> PF00025.16  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.19   2.1e+02      16      41 ..      59      84 ..      47     106 .. 0.84
   2 !   13.4   0.0   2.6e-05     0.029      81     171 ..     143     236 ..     135     240 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.19
                 EEEEE--TT---HHHHHHHHHS-EEE CS
   PF00025.16 16 rilllGLDnaGKtTilkklkleelvt 41
                  i l+G  n+GK+ +   l +e++++
  MMETSP0890-20130614|39436_1 59 TIALVGYFNSGKSSLFRALCTEDQSH 84
                 57899*************99998776 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.6e-05
                  TECEEEEEEETT.....-CTTHHHHHHHHHHHHTSGGGTTSEEEEEEE-TTSTT---HHHHHHHTTTTTST.SSSE.EEEEEBTTTTB--HHHHHHH CS
   PF00025.16  81 ktdavifvvDsa.....dreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkl.eiqkcsavkgeglkeglewl 171
                  + d +++v+D++      r+R +  ++eL++ll +  l   + +++ NK D+  ++ ++ lr++   ++ k+++k+  i+  s  +geg++e  + l
  MMETSP0890-20130614|39436_1 143 AADILVHVLDASvspqvARRRASIVEKELSSLLGDFPL---PRIIFYNKLDAMPSAAADSLRRKAISRSTKNRKKFpDIVLGSCHTGEGIQELRNAL 236
                  56889999998622222567999999*******99877...5689******998888888888777777775555437999999********98877 PP

>> PF02421.13  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.7e-05     0.031       2      25 ..      59      82 ..      58     245 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
                 EEEEE--TT---HHHHHHH----T CS
   PF02421.13  2 tvalvGnpnvGKttlfnaltgakq 25
                 t+alvG  n+GK++lf al+   q
  MMETSP0890-20130614|39436_1 59 TIALVGYFNSGKSSLFRALCTEDQ 82
                 79*****************98776 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   8.2e-05     0.093      17      62 ..      51      91 ..      33     170 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.2e-05
    PF13191.1 17 rrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdql 62
                 rr+ +g+p + ++G+  +GKSsL r+     l  + + ++  +d+ 
  MMETSP0890-20130614|39436_1 51 RRQKSGTPTIALVGYFNSGKSSLFRA-----LCTEDQSHSVIVDDR 91
                 345556669*****************.....544444444433333 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.2e-05     0.093       2      82 ..      60     152 ..      59     190 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.2e-05
    PF08477.8   2 vvvvGdkgvGKssllsqlvgeefp.....kkklpeeikgdtlavktlevdvdtellelwdlggr......eelkkehell.lkkadaillvyd 82 
                  +++vG  ++GKssl ++l++e+++     +  +    ++ t  +++ + d +t  l +  +g          +++   l  +++ad  + v+d
  MMETSP0890-20130614|39436_1  60 IALVGYFNSGKSSLFRALCTEDQShsvivDDRPFATLDPRTRRIQIGTPDAATTALLVDTVGFVaklptqVSAAFRATLEeVRAADILVHVLD 152
                  78999****************999888887777777777777777777777777732222222222221133333222224555565555555 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.13       1      22 [.      58      79 ..      58      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
                 -EEEEE-------HHHHHHHHH CS
    PF03205.9  1 pivavvGpkdsGKTtlieklvn 22
                 p++a+vG+ +sGK++l + l+ 
  MMETSP0890-20130614|39436_1 58 PTIALVGYFNSGKSSLFRALCT 79
                 6799**************9964 PP

>> PF02151.14  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00023      0.27      22      35 ..      30      43 ..      30      43 .. 0.95
   2 ?    0.4   0.1      0.39   4.4e+02      20      27 ..     290     297 ..     290     297 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
   PF02151.14 22 kAAklRDqinalek 35
                 +AA+lRD+inal+k
  MMETSP0890-20130614|39436_1 30 RAARLRDKINALRK 43
                 8***********97 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.39
   PF02151.14  20 FEkAAklR 27 
                  F++AAklR
  MMETSP0890-20130614|39436_1 290 FDLAAKLR 297
                  89*****9 PP

>> PF13600.1  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   0.00056      0.64      50      94 ..       9      53 ..       3      57 .. 0.88
   2 ?   -0.6   0.0       1.4   1.6e+03      43      58 ..     142     158 ..      83     175 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00056
    PF13600.1 50 vlsvsvrrrdlqekdadaaseelaeleaelraledelarleaeke 94
                 ++s +v+rr + e+d ++ +++ a+l++++ al++ ++r +++++
  MMETSP0890-20130614|39436_1  9 LGSTKVERRATMERDKKSLQARAARLRDKINALRKHRERTRDRRQ 53
                 678889999999999************************999986 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.4
    PF13600.1  43 sgegn.atvlsvsvrrr 58 
                  ++++  + vl+ sv+ +
  MMETSP0890-20130614|39436_1 142 RAADIlVHVLDASVSPQ 158
                  22211233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       734  (0.0536864); expected 273.4 (0.02)
Passed bias filter:                      571  (0.0417642); expected 273.4 (0.02)
Passed Vit filter:                        72  (0.00526624); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.43s 00:00:01.15 Elapsed: 00:00:00.86
# Mc/sec: 841.51
//
Query:       MMETSP0890-20130614|39443_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-67  225.5   0.0    7.9e-67  225.2   0.0    1.1  1  PF14234.1 Domain of unknown function (DUF4336)


Domain annotation for each model (and alignments):
>> PF14234.1  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0   5.8e-71   7.9e-67      22     284 ..       2     312 ..       1     313 [. 0.90

  Alignments for each domain:
  == domain 1    score: 225.2 bits;  conditional E-value: 5.8e-71
    PF14234.1  22 mtvvklksGgLlvyaPlapTeelvelleeleeeggeVkhivlptaalEHKvfvgplarkfpkAevwvapgqwsfPlnlplellgip.ktktl.eedsdavpwadeievkvLeplslglgk...faevaffhkasktllvtDavvsvpeeppevieldp.kpllfhardkadekledteearrkGWkrivLfalylkpealeepea...........................................sfealse..rllvaPiletLvferareevlawveevakew.dferivpaHfdapieatpeefraafa 284
                  +++v+l+ GgLlvy  +apT+e+++ll++le+e g+Vkhi+lp++a EHK+++ +la+k  kA +w+ap+q+sfPlnlp +llg+p + +t+   d++++++a ++++  L+p  +   +   f+e++f+hk++++ll+ D  vsv+++ppe+i +++  +l +h+rd a+     ++  r +GWk+i+Lfaly++ + l+++++                                            f+als+   llv+Pil   +++r++++ +a++e++ +   d++ ++p+Hfdap++a+  e+++af+
  MMETSP0890-20130614|39443_1   2 CIIVRLSFGGLLVYGAVAPTKECLSLLASLEKEYGQVKHIILPSTATEHKLYAIQLAQKKTKALLWIAPSQFSFPLNLPNNLLGFPsRGRTRlLVDKANPEFACDFDFIRLGPFFSAPSTpasFEEIVFYHKKTQSLLCCDLFVSVSSQPPEIIFQNDvRALDYHSRDFAS----SKPGDRLDGWKKICLFALYFQSSPLRVASEpdgtfkglidflrtsfpkpngfnntgwgnffawswpdtkavdrAFNALSAhgSLLVPPILALTILNRRPADCQAFIEALDNICaDISYVIPCHFDAPVRADLGEIESAFR 312
                  789***********************************************************************************533443156778999***********98776665667*****************************8776662556679987775....89999********************9887777889999999999999999***********************8888887557***********************999885459*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.78
# Mc/sec: 1271.91
//
Query:       MMETSP0890-20130614|39450_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       704  (0.0514921); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.95
# Mc/sec: 1803.57
//
Query:       MMETSP0890-20130614|39464_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.53
# Mc/sec: 266.76
//
Query:       MMETSP0890-20130614|39461_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0077   15.0   0.6     0.0091   14.8   0.4    1.1  1  PF07555.8  beta-N-acetylglucosaminidase
  ------ inclusion threshold ------
      0.028   14.6   3.6      0.043   13.9   2.3    1.4  1  PF00435.16 Spectrin repeat
      0.031   13.7   0.0      0.049   13.1   0.0    1.3  1  PF00758.13 Erythropoietin/thrombopoietin
      0.055   11.8   1.6      0.066   11.5   1.1    1.1  1  PF04124.7  Dor1-like family
       0.13   11.3   2.2       0.17   10.9   1.5    1.2  1  PF04157.11 EAP30/Vps36 family
        0.2   11.1   6.1       0.29   10.6   4.2    1.2  1  PF05266.9  Protein of unknown function (DUF724)
       0.24   11.6   2.4       0.37   11.0   1.7    1.3  1  PF07739.8  TipAS antibiotic-recognition domain
       0.27   10.8   7.5       0.55    9.8   2.8    2.1  2  PF04859.7  Plant protein of unknown function (DUF641)
       0.31   10.5   5.1       0.36   10.3   3.4    1.3  1  PF12761.2  Actin cytoskeleton-regulatory complex protein END3
       0.36   11.4   6.5        0.3   11.7   2.1    2.0  2  PF07303.8  Occludin homology domain
       0.54    9.5  11.4       0.66    9.2   7.9    1.1  1  PF03357.16 Snf7
        1.4    8.8   5.9        2.3    8.0   4.1    1.5  1  PF14282.1  FlxA-like protein


Domain annotation for each model (and alignments):
>> PF07555.8  beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4     8e-06    0.0091      86     141 ..      41      96 ..      28     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8e-06
                  -HHHHHHHHHHHHHHHC----EEEEE-TS-SSS--TTTTTT-SSHHHHHHHHHHHH CS
    PF07555.8  86 seedleallaKleqlydlGvrsfaillDDieaelveadkekaqsaaeaqvkllnkv 141
                  + ++++++ +K+ +++  Gv++++  lDDi++++     e+++   e+  k+l+k 
  MMETSP0890-20130614|39461_1  41 QRQEYAKMHKKMIAVKAKGVEAIQKKLDDIDTQMEALRMETKDPDTEKGNKVLEKY 96 
                  5799***************************9988888888876666666666654 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.3   3.8e-05     0.043      43      97 ..      30      82 ..      12      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH CS
   PF00435.16 43 hkaleaelaaqqervealnelaeklideghsaseeieerleelnerWeeLlelaa 97
                 +   ++ela  + + ++  ++ +k+i+ + +  e+i+++l++++++ e+L+  ++
  MMETSP0890-20130614|39461_1 30 L--KKKELAILELQRQEYAKMHKKMIAVKAKGVEAIQKKLDDIDTQMEALRMETK 82
                 4..4789999999*************************************97665 PP

>> PF00758.13  Erythropoietin/thrombopoietin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.3e-05     0.049       8      46 ..      91     129 ..      88     143 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.3e-05
   PF00758.13   8 RvLerllleakeaenvlsgCaevcslsenilvPdvkvnl 46 
                  +vLe++   ak + + +s+  e+   +++i++Pd +v +
  MMETSP0890-20130614|39461_1  91 KVLEKYSASAKFMRSTTSQLDESRISAKPIILPDNDVPI 129
                  79*********************************9976 PP

>> PF04124.7  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   5.8e-05     0.066      14      89 ..      25     113 ..      17     127 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.8e-05
    PF04124.7  14 kepelLae.eaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlkl............pkLteectrfskkaeeisek 89 
                   +++ L++ e + +  q+q+ a+   k ++ +a+  eai ++l+di+ q+e L+ ++            +k + +++ ++   +++ e+
  MMETSP0890-20130614|39461_1  25 AQRKVLKKkELAILELQRQEYAKMHKKMIAVKAKGVEAIQKKLDDIDTQMEALRMETkdpdtekgnkvlEKYSASAKFMRSTTSQLDES 113
                  4455555405556678**************************************99977777777555555554444444444444444 PP

>> PF04157.11  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.5   0.00015      0.17       6      57 ..      38      89 ..      35     117 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
                 --..------------TTTHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGG-H CS
   PF04157.11  6 ieqsreqqrkendlgaqialedleqlmkqakelvelleslakkhkkeikadp 57
                 +e +r++ +k+ ++ +  +++ +e+++k+++++ +++e l+ + k+  +++ 
  MMETSP0890-20130614|39461_1 38 LELQRQEYAKMHKKMIAVKAKGVEAIQKKLDDIDTQMEALRMETKDPDTEKG 89
                 67799************************************99998777654 PP

>> PF05266.9  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.2   0.00026      0.29     110     181 ..      14      80 ..       3      88 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00026
    PF05266.9 110 eerkklekeiaekeieqqeleseiaelerkilelrrke.allkekkeaed.keiarlkseasklkqeledvele 181
                  ++r+++  ei+++        + +++ e  ilel+r+e a++++k+ a + k +++++++ ++++ ++e++++e
  MMETSP0890-20130614|39461_1  14 RKRRRMSSEIEAQ-------RKVLKKKELAILELQRQEyAKMHKKMIAVKaKGVEAIQKKLDDIDTQMEALRME 80 
                  4566666666666.......889999**********9845677777776668899*************999987 PP

>> PF07739.8  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7   0.00032      0.37       6      73 ..      36     103 ..      31     114 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00032
                  ---------------------------TTHHHHHHHHHHHHHHH----TT----HHHHHHHH---TTS CS
    PF07739.8   6 arerygdeayaeseeklkslskedkeelkkeweelfaelaaamekgvdpdseevqelakehrdlleef 73 
                  a+ +++ ++ya+ ++k+ + +++  e+++k+ +++  ++ a++ +  dpd e+ +++ +++ +  +++
  MMETSP0890-20130614|39461_1  36 AILELQRQEYAKMHKKMIAVKAKGVEAIQKKLDDIDTQMEALRMETKDPDTEKGNKVLEKYSASAKFM 103
                  5666777899*************************************************999887743 PP

>> PF04859.7  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.8   0.00048      0.55      72     110 ..      12      50 ..       5      68 .. 0.79
   2 ?    3.5   1.1     0.042        48      85     123 ..      48      86 ..      42     110 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00048
    PF04859.7  72 gsakdailaaeiqeqrsllktyeivvkkLeaelrakdse 110
                  g+ k++++ +ei+ qr+ lk+ e ++ +L+++  ak  +
  MMETSP0890-20130614|39461_1  12 GDRKRRRMSSEIEAQRKVLKKKELAILELQRQEYAKMHK 50 
                  567999************************998777554 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.042
    PF04859.7  85 eqrsllktyeivvkkLeaelrakdseieelrekleeakk 123
                  + ++ ++   + v+ ++++l+  d+++e lr++ ++   
  MMETSP0890-20130614|39461_1  48 MHKKMIAVKAKGVEAIQKKLDDIDTQMEALRMETKDPDT 86 
                  455566666666677777777777777777776654433 PP

>> PF12761.2  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.4   0.00032      0.36     122     180 ..      18      78 ..       4      95 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00032
    PF12761.2 122 r.kkksknesalvkkeleqLLkYkeeqlrelke.skskegkdlksvkedielieeQvevLe 180
                  r +++ + +++++kk+   +L+ +++++ ++++   + ++k ++++++ ++ i++Q+e L+
  MMETSP0890-20130614|39461_1  18 RmSSEIEAQRKVLKKKELAILELQRQEYAKMHKkMIAVKAKGVEAIQKKLDDIDTQMEALR 78 
                  1456667778999999999***********99877889999*****************997 PP

>> PF07303.8  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.0      0.28   3.2e+02      32      87 ..      24      50 ..      11      58 .. 0.38
   2 ?   11.7   2.1   0.00026       0.3      17      69 ..      45     100 ..      38     117 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.28
    PF07303.8 32 deiskklaeldaelkslkegseeykevakileeyeklkkrspdykekkerckyLkn 87
                 ++ +k l++   el  l+ +++ey++++                           +
  MMETSP0890-20130614|39461_1 24 EAQRKVLKKK--ELAILELQRQEYAKMH---------------------------K 50
                 3333333322..2222222223333332...........................2 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00026
    PF07303.8  17 FdsdykeYkeLqae.ldeiskklaeldaelkslkegseeykeva..kileeyeklk 69 
                  +++ +k+  +++a+ +++i+kkl+++d++++ l+ ++++ ++ +  k+le+y    
  MMETSP0890-20130614|39461_1  45 YAKMHKKMIAVKAKgVEAIQKKLDDIDTQMEALRMETKDPDTEKgnKVLEKYSASA 100
                  33334444444443399**************9999666555444459*****9754 PP

>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.9   0.00058      0.66       7     102 ..      17     111 ..      10     117 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00058
   PF03357.16   7 rkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaien..aksnkevlnamkqgakamkamnkkmd 102
                  r+   e+e +++ l+kk+    +  ++ ++k+ k++  + +k    + k ld++d    ++e+ +++++   +++ ++vl+ +  +ak m+++ +++d
  MMETSP0890-20130614|39461_1  17 RRMSSEIEAQRKVLKKKELAILELQRQEYAKMHKKMIAVKAKGVEAIQKKLDDID---TQMEALRMETKDpdTEKGNKVLEKYSASAKFMRSTTSQLD 111
                  3334445555555555555544444445555555555555555555555555555...55666666666411556679***************99998 PP

>> PF14282.1  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1     0.002       2.3      19      92 ..      18      99 ..       3     114 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.002
    PF14282.1 19 sqiksLqkqiqsltkq...lkelssdeeltaeekq.....kqqqliqqQIqalqaQiaqlqsqqseeaqqsqessvedkssq 92
                   +++++ q + l+k+   + el+++e +   +k+     k  ++iq+ ++++  Q+  l  + ++   ++ ++  e+ s++
  MMETSP0890-20130614|39461_1 18 RMSSEIEAQRKVLKKKelaILELQRQEYAKMHKKMiavkaKGVEAIQKKLDDIDTQMEALRMETKDPDTEKGNKVLEKYSAS 99
                 4445555555555554322667777655555555455555999********************9999999988888765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1214  (0.0887946); expected 273.4 (0.02)
Passed bias filter:                      606  (0.0443242); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:01.04
# Mc/sec: 336.41
//
Query:       MMETSP0890-20130614|39470_1  [L=944]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-06   26.4  20.7    3.1e-06   26.4  14.4    2.7  2  PF02463.14 RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.6   5.3         1   1.4e+04     100     100 ..     137     137 ..      55     278 .. 0.65
   2 !   26.4  14.4   2.3e-10   3.1e-06      72     198 ..     594     901 ..     468     919 .. 0.83

  Alignments for each domain:
  == domain 1    score: -8.6 bits;  conditional E-value: 1
                  E CS
                  x RF
   PF02463.14 100 t 100
                  +
  MMETSP0890-20130614|39470_1 137 E 137
                  1 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 2.3e-10
                  ----EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TT.......................................................................................................................................................................................G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHH.HHH..HH-BTBEEEEE-S- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxx RF
   PF02463.14  72 akvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiske.......................................................................................................................................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvae.llk..eksknaQfivislr 198
                   ++ + +v+i+    d + +i++ +++ ++++kr+++ + ++++ke + +++ e  + ++i+ +                                                                                                                                                                                       +LSgGe++ + l++l+Ai ++  +p+ ++De+d  +D+  +++  e l++  ++  + Qfi i+ +
  MMETSP0890-20130614|39470_1 594 LNQAKNQVDIY----DTN-EIQKLRTEKRKTIKRNNQLQKELEEKEQQLRDLLETQQLKKIEVNrlekkakkaqeevqnaqklldaeharkasltalayvnlkklnldepnpqdiikfkseeavqakidankklfneatksaaldetdldvmrkrvnnveiaykeksagsarckeeakvqqadikerlrllrrihkaicrktnlefnkvlntkgasgdlvfdhfnerlgiiyqrdafddsnritsiaNLSGGERSFATLSMLIAIGHCIESPFRIMDEFDIFMDQFSRKIAMEqLIEiaNTMLDKQFIFITPQ 901
                  33333444442....221.2344445555666666666666777777666666666666666668888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888999999999*******************************************************************************************99987665155543455569***99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2652  (0.193973); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                       148  (0.010825); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.28u 0.44s 00:00:03.72 Elapsed: 00:00:02.06
# Mc/sec: 1092.83
//
Query:       MMETSP0890-20130614|39475_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       118  (0.00863078); expected 273.4 (0.02)
Passed bias filter:                      114  (0.00833821); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 327.12
//
Query:       MMETSP0890-20130614|39474_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-48  163.5   0.0    6.4e-48  163.4   0.0    1.0  1  PF01866.12 Putative diphthamide synthesis protein
  ------ inclusion threshold ------
       0.26   11.7   2.0       0.97    9.9   0.3    2.6  2  PF03130.11 PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> PF01866.12  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   9.3e-52   6.4e-48      93     303 ..       3     221 ..       1     222 [] 0.91

  Alignments for each domain:
  == domain 1    score: 163.4 bits;  conditional E-value: 9.3e-52
   PF01866.12  93 rialvttvqfvhaleevkeiLeekgieveigkpdsrplspgqvlGctfsalkeedeadavlyvGdgrfhllgvala.tkkpvlaydPy.ksleveeveedaekilrrRyaaiekakdakkfgiivgtkggqgrlklaerlekllkekgkeaylillseispdkLanld....vDafVqvaCPRlsiddgea....FkkplLtPyEleialgkre....keeypmd 303
                  ++a+++tvqf  ++++++++L++   + +i +p+  pls+g+vlGct++ +++    d++++v+dgrfhl++++++ +  ++l+ydPy k++++e  +++ + + +rR+aa+eka+ a+ ++i++gt+g+qg+++++ rl+ ll++  ++ +++l sei  +    l     + a +q+ CPRlsid+g +     + plL+PyE+ +a++++     + +ypmd
  MMETSP0890-20130614|39474_1   3 QMAIAGTVQFLRSINRAATQLKAALPNNQIHIPQAFPLSSGEVLGCTAPDMSA---YDTIVFVADGRFHLEAAMIKnPYARFLRYDPYlKRFSQE--KYNRNLMAQRRQAAVEKARTASAVAIVLGTLGRQGSPAILARLQALLQN-KVKLLILLASEIHISHFSHLTadgdIQAIIQICCPRLSIDWGHDalrhRNIPLLSPYEAFAAFDSSVdfapQTNYPMD 221
                  6899*******************88899**********************966...59*************************************..99*******************************************9998.699*********998888773346899**************9762221356************887678888999998 PP

>> PF03130.11  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.3   2.1e+03      14      25 ..      15      27 ..       4      27 .. 0.77
   2 ?    9.9   0.3   0.00014      0.97       6      27 .]     119     143 ..     115     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.3
                 S.HTTHHHHHHHC CS
   PF03130.11 14 d.eeaipaLleaL 25
                 +  +a+ +L++aL
  MMETSP0890-20130614|39474_1 15 SiNRAATQLKAAL 27
                 4578999999998 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00014
                  HHHCCH--S...HTTHHHHHHHCCH CS
   PF03130.11   6 akaLgqlgd...eeaipaLleaLqd 27 
                  a  Lg+lg    ++++++L+++Lq+
  MMETSP0890-20130614|39474_1 119 AIVLGTLGRqgsPAILARLQALLQN 143
                  566666666666***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.38s 00:00:00.89 Elapsed: 00:00:00.99
# Mc/sec: 537.36
//
Query:       MMETSP0890-20130614|39480_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   24.4   0.0    1.1e-05   24.3   0.0    1.0  1  PF10009.4 Uncharacterized protein conserved in bacteria (DUF2252)


Domain annotation for each model (and alignments):
>> PF10009.4  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.3e-10   1.1e-05     247     297 ..       2      54 ..       1      55 [] 0.92

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 8.3e-10
    PF10009.4 247 llqiKearksalerlvsasepeaeek..enegeRvvegqrllqaasDlfLgwt 297
                  +l++K   ++a+   + + e  ++e+  +negeR v +qr+l++++D++Lg++
  MMETSP0890-20130614|39480_1   2 ILDVKYEPPPAIRDALYEDERLWYETlyQNEGERCVRAQRRLTSYTDPYLGYA 54 
                  89************99999998988777***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       160  (0.0117028); expected 273.4 (0.02)
Passed bias filter:                      157  (0.0114833); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.51
# Mc/sec: 258.43
//
Query:       MMETSP0890-20130614|39485_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-43  148.2  27.1    1.1e-42  146.4  18.8    1.7  1  PF03998.8 Utp11 protein


Domain annotation for each model (and alignments):
>> PF03998.8  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4  18.8   8.3e-47   1.1e-42       1     242 []       5     221 .]       5     221 .] 0.87

  Alignments for each domain:
  == domain 1    score: 146.4 bits;  conditional E-value: 8.3e-47
    PF03998.8   1 rrqhkERsQpeeRkklGlLEKkkDYklRAkdyhkKkeklkkLkekaaerNpDEFyfgMissktddkGvhvekreekeelskeqvkllktqdlgyvrtkrqaekkkieklkeelalaasksaalnkhivFvddeeeqksfkpakefdteeeeldekenrpkkeqlekkelsskekakkklakkkkkeykelkerkkrekelekaeqklelqralm.kkgkakkkkikkkknkkkvykwkkeRkr 242
                  rr+h+ER+Qp++Rk++G+LEKk+DYk+RA++y+kK  +l+ L++kaaerNpDEFy  M++s   +   ++e+   + ++s+ +++ lk++dl+ v     ++ +k++kl+++l+  + + ++ n+h++F++ +        ++    +++++++++++            ++++  k+++k+ ++ y +l+++++r+++ ++a q l+++r +m +kg+++k+k  ++   ++vykwkk+Rk+
  MMETSP0890-20130614|39485_1   5 RRTHRERAQPSSRKHMGILEKKQDYKERAENYQKKMSRLRILQKKAAERNPDEFYVSMTHSVAGK---EIERP--EARKSHSEISKLKEEDLRLVTIRKVMDDRKVDKLQAQLHDIQGATTN-NEHTFFINPNVP------DEN-TVAQKAISKRQEQ------------ANKAPPKDAKKQVRRAYARLEAALERRSASTRALQSLQTERVAMiSKGHKRKVKDAQDG-LPPVYKWKKQRKK 221
                  9***********************************************************99777...66655..4789**********************************998877777.8*******9966......222.2233333333333............2457789999**********************************988877777777776.59**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1178  (0.0861615); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:01.05
# Mc/sec: 504.38
//
Query:       MMETSP0890-20130614|39490_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   28.7   0.0    1.6e-06   28.2   0.0    1.2  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.2e-10   1.6e-06      53     163 ..      60     184 ..       2     185 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.2e-10
                  C.................HHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE-- CS
                  x.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23  53 s.................takskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqfvfvtrgprvalrAtrdIpkGeEltidY 163
                                     a +  + +  + +   ++s++   ++ +l+  + + + +++ +a++  +++ ++    d  +l+p+ +++NH+ +pN++ +f++  +++ v+l  +rd p++++++ +Y
  MMETSP0890-20130614|39490_1  60 TlpttkelknlpvlwsdqEAQMLHGTQSGISRQELLASWKNDFEAIKLRNCPFQISWHQWLEAHALVMSRSYNLPHLDY-ALVPFLDYINHNDEPNAEPIFDD--NNDFVELHILRDTPANTQIFSSY 184
                  0333333344555555666778899999999999999999999999999999999999999999999999999888886.789*****************995..999*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:01.33
# Mc/sec: 605.40
//
Query:       MMETSP0890-20130614|39498_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   21.7   0.2      0.002   18.0   0.1    2.1  1  PF03061.17 Thioesterase superfamily


Domain annotation for each model (and alignments):
>> PF03061.17  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.5e-07     0.002       2      60 ..      15     101 ..      14     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.5e-07
                  SSB-CHHHHHHHHHHHHHHHHHTSTC............................TEEEEEEEEEEEESS---TTSEEEEEEEEEEE- CS
   PF03061.17   2 GivhgGvylalldeaaglalrslggs............................gqgvvvvelnidFlrpvrlgdvltvearvlrlg 60 
                  Gi+hgG ++ l+d ++g      +                              +++  +++l++++++pv  +  ++++++++   
  MMETSP0890-20130614|39498_1  15 GIIHGGLTALLFDNTFGWTNFIVAMQssevndlefvvsetirhllndnkadtstKKIGFTANLSVNYRKPVAAESAVLITTKLEFME 101
                  8999999999999998766555555566888999999999999999999999*****************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 547.17
//
Query:       MMETSP0890-20130614|39499_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:01.00
# Mc/sec: 704.53
//
Query:       MMETSP0890-20130614|39506_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       178  (0.0130193); expected 273.4 (0.02)
Passed bias filter:                      168  (0.0122879); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.87
# Mc/sec: 1278.06
//
Query:       MMETSP0890-20130614|39511_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.018   14.7   0.0    1.3  1  PF08481.5 GBS Bsp-like repeat
      0.053   12.5   0.2      0.098   11.6   0.1    1.4  1  PF11152.3 Protein of unknown function (DUF2930)


Domain annotation for each model (and alignments):
>> PF08481.5  GBS Bsp-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.7e-06     0.018      24      61 ..     213     250 ..     195     253 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
    PF08481.5  24 kkikevqvpvWSekngqdDlkWYeatkqadgsykvtvk 61 
                  +++  v + vWS++++q  l+W+   +++d+ ++++++
  MMETSP0890-20130614|39511_1 213 AYVAIVPCRVWSDNKQQQQLEWFIGLRKKDDLTSTDFN 250
                  456667788**************999999998888776 PP

>> PF11152.3  Protein of unknown function (DUF2930)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.4e-05     0.098       3     107 ..      55     153 ..      53     166 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
    PF11152.3   3 livGlllllllllNrlst..aeispsqsRaevlglllavvlilvgllwkrlkpkapeaveLegeegfelseelsealkeeLaWasellltaTsaasvlvvvdgevll 107
                  ++ G++l++ll++N+ s    +   s+s +e++g ++a  l++  ll     p++ + v L  + +++ +  +se++     Wa +++ t+T+a+ + +v + + ll
  MMETSP0890-20130614|39511_1  55 IFGGGVLIALLIANHASPtvGSSGLSLSISEAIGTMSALALVIPYLL-----PQKDTPVILRRRLVLYGDTPISENQA---RWAASAVATSTPAQGLALVQNRNRLL 153
                  45577888899999955323555668999*****9988777665554.....88888999999999999999998865...6*************998887666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:01.00
# Mc/sec: 630.24
//
Query:       MMETSP0890-20130614|39516_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       254  (0.0185781); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.82
# Mc/sec: 172.42
//
Query:       MMETSP0890-20130614|39515_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-05   23.3   0.1    9.4e-05   22.3   0.1    1.5  1  PF13921.1  Myb-like DNA-binding domain
    5.9e-05   22.9   0.0    9.8e-05   22.2   0.0    1.3  1  PF00249.26 Myb-like DNA-binding domain
     0.0017   17.7  11.3     0.0059   15.8   6.4    2.1  2  PF05308.6  Mitochondrial fission regulator
  ------ inclusion threshold ------
       0.26   10.4   6.5       0.44    9.6   4.5    1.4  1  PF01213.14 Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   2.7e-08   9.4e-05       1      45 [.      99     141 ..      99     156 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.7e-08
    PF13921.1   1 WtdeEdeiLlklveeygndWseIaeelgrRtplacqdrwknkLrp 45 
                  Wt++ d +L k+v+++++d+  +a+ l   ++++c+ rw + +++
  MMETSP0890-20130614|39515_1  99 WTPDLDARLSKYVQHHSFDFDAVASDLQ-IDAESCRLRWVE-IDK 141
                  ***************************9.9*********99.754 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-08   9.8e-05       3      44 ..      98     136 ..      98     139 .. 0.95

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.9e-08
                  SS-HHHHHHHHHHHHHTTS-.HHHHHHHCTTTS-HHHHHHHH CS
   PF00249.26   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                  +WT+++d +l ++v+ +  + ++++a+ ++    +++c++rw
  MMETSP0890-20130614|39515_1  98 AWTPDLDARLSKYVQHHSFD-FDAVASDLQ--IDAESCRLRW 136
                  6*******************.********9..679******* PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   6.4   1.7e-06    0.0059     163     233 ..      28      93 ..       2     103 .. 0.54
   2 ?    1.7   0.0     0.035   1.2e+02      49      84 ..     193     227 ..     171     235 .] 0.61

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.7e-06
    PF05308.6 163 vslslkssstasvvisdpteepelevppppppPpPlpavslqqsasaielikerkekksaeektlvssksk 233
                  +++sl+s ++as +i  +++ +  ++ppppppPpP  + s+q++ +a ++         +e+ t ++++ +
  MMETSP0890-20130614|39515_1  28 TKTSLPSPENASPPIHSIEQST-NVSPPPPPPPPPSTTNSIQTNNTAANISSGIL----EEKSTSSQQQQR 93 
                  3345555677777776664433.55666677777777777777777774433322....233333333333 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.035
    PF05308.6  49 speevpslADvawvaedeeesyarlRsdvrskreee 84 
                   pe+ pslAD +   +de+  ++  R + +++ ++e
  MMETSP0890-20130614|39515_1 193 RPENLPSLADFGDESDDEDT-SLFARISFSHEFHRE 227
                  34449*****9986666655.455565555555555 PP

>> PF01213.14  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.5   0.00013      0.44     223     255 ..      43      75 ..      17      87 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
                  XXXXXXXXXXXXXXXXXXXX.........XXXXX CS
   PF01213.14 223 aavsasktaaPppPpppppP.svdtikdsvesak 255
                   + + s   + ppPpppppP +++ i++++++a+
  MMETSP0890-20130614|39515_1  43 HSIEQSTNVS-PPPPPPPPPsTTNSIQTNNTAAN 75 
                  2333333344.55555555536777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       510  (0.0373025); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.37s 00:00:00.90 Elapsed: 00:00:01.08
# Mc/sec: 521.43
//
Query:       MMETSP0890-20130614|39513_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-12   47.8  60.6    9.9e-05   22.2   5.3    5.9  6  PF07974.8  EGF-like domain
  ------ inclusion threshold ------
      0.011   15.4   6.2      0.011   15.4   4.3    4.7  4  PF00053.19 Laminin EGF-like (Domains III and V)
      0.024   14.5  44.9        1.5    8.7   1.0    5.8  5  PF00008.22 EGF-like domain
       0.29   11.2  23.5       0.29   11.2   1.4    5.0  4  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   7.6   4.7e-05      0.16       1      27 [.       4      26 ..       4      36 .. 0.87
   2 ?   -2.5   0.1       1.6   5.4e+03      10      19 ..      32      39 ..      30      41 .. 0.60
   3 !   19.7   5.8   1.8e-07    0.0006       6      32 .]      61      87 ..      55      87 .. 0.92
   4 !   11.3   1.5   7.7e-05      0.26       1      15 [.      92     103 ..      92     105 .. 0.88
   5 !    5.7   0.3    0.0043        15      19      32 .]     147     160 ..     142     160 .. 0.86
   6 !   22.2   5.3   2.9e-08   9.9e-05       7      32 .]     402     427 ..     396     427 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.7e-05
    PF07974.8  1 CsadgliCgghGtCvkq.cgkCvCdsgy 27
                 C+++   C+ghGtC ++ +  C C++++
  MMETSP0890-20130614|39513_1  4 CPNS---CSGHGTCGSDdT--CTCYANW 26
                 9975...********9866..*****97 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.6
    PF07974.8 10 ghGtCvkqcg 19
                 ++G C +  +
  MMETSP0890-20130614|39513_1 32 EGGDCSD--R 39
                 5788873..3 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 1.8e-07
    PF07974.8  6 liCgghGtCvkqcgkCvCdsgyqGktC 32
                 ++C g G+C++++g C+C  g++Gk C
  MMETSP0890-20130614|39513_1 61 AECAGVGICDRTKGECDCFEGFTGKGC 87
                 46************************9 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 7.7e-05
    PF07974.8   1 CsadgliCgghGtCv 15 
                  C++d   C+ghGtC+
  MMETSP0890-20130614|39513_1  92 CPND---CSGHGTCE 103
                  9964...*******7 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.0043
    PF07974.8  19 gkCvCdsgyqGktC 32 
                  ++C Cd+gy+  +C
  MMETSP0890-20130614|39513_1 147 RICRCDAGYTDLDC 160
                  69*******98887 PP

  == domain 6    score: 22.2 bits;  conditional E-value: 2.9e-08
    PF07974.8   7 iCgghGtCvkqcgkCvCdsgyqGktC 32 
                  +Cg +G+C+ ++g C+C  gy+G+ C
  MMETSP0890-20130614|39513_1 402 ECGRRGKCDYSTGLCECFEGYTGDRC 427
                  4********88*************** PP

>> PF00053.19  Laminin EGF-like (Domains III and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.2   6.6         4   1.4e+04       3      25 ..       4      25 ..       3      41 .. 0.68
   2 ?    6.6   8.4    0.0019       6.5       3      32 ..      63      88 ..      61     102 .. 0.85
   3 ?    1.0   0.7      0.11   3.6e+02      20      33 ..     149     162 ..     141     171 .. 0.82
   4 ?   15.4   4.3   3.3e-06     0.011       5      32 ..     405     428 ..     401     429 .. 0.86

  Alignments for each domain:
  == domain 1    score: -7.2 bits;  conditional E-value: 4
                 STT-B-CC--B-S----BSBSTT CS
   PF00053.19  3 CnphgsssssCdsstgqClCken 25
                 C+++ s +++C s + +C C  n
  MMETSP0890-20130614|39513_1  4 CPNSCSGHGTCGS-DDTCTCYAN 25
                 5555555568877.677888665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0019
                 STT-B-CC--B-S----BSBSTTEE---S- CS
   PF00053.19  3 CnphgsssssCdsstgqClCkenveGrkCd 32
                 C + g     Cd+++g+C+C e+++G+ C 
  MMETSP0890-20130614|39513_1 63 CAGVG----ICDRTKGECDCFEGFTGKGCG 88
                 66666....8*******************7 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.11
                  BSBSTTEE---S-E CS
   PF00053.19  20 ClCkenveGrkCdr 33 
                  C+C  +++  +C r
  MMETSP0890-20130614|39513_1 149 CRCDAGYTDLDCSR 162
                  99999999999976 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 3.3e-06
                  T-B-CC--B-S----BSBSTTEE---S- CS
   PF00053.19   5 phgsssssCdsstgqClCkenveGrkCd 32 
                   +    ++Cd stg C+C e+++G++C+
  MMETSP0890-20130614|39513_1 405 RR----GKCDYSTGLCECFEGYTGDRCQ 428
                  44....49*******************7 PP

>> PF00008.22  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.8    0.0018       6.2       3      26 ..       5      24 ..       4      30 .. 0.90
   2 ?    6.1   3.3    0.0029       9.8      10      31 ..      67      85 ..      60      86 .. 0.78
   3 ?    8.7   1.0   0.00044       1.5       3      17 ..      93     107 ..      92     118 .. 0.78
   4 ?    4.6   0.0    0.0084        29      18      30 ..     145     157 ..     138     159 .. 0.83
   5 ?    7.0   3.8    0.0015       5.2       5      32 .]     402     426 ..     398     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0018
                 TTTCSS--EEEEECCTEEEEE--T CS
   PF00008.22  3 pnpCsngGtCvdtpgggytCeCpe 26
                 pn Cs++GtC + +    tC+C  
  MMETSP0890-20130614|39513_1  5 PNSCSGHGTCGSDD----TCTCYA 24
                 679***********....****75 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0029
                 -EEEEECCTEEEEE--TTCTTT CS
   PF00008.22 10 GtCvdtpgggytCeCpeGytGk 31
                 G+C +t   + +C+C eG+tGk
  MMETSP0890-20130614|39513_1 67 GICDRT---KGECDCFEGFTGK 85
                 555555...59**********8 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00044
                  TTTCSS--EEEEECC CS
   PF00008.22   3 pnpCsngGtCvdtpg 17 
                  pn Cs++GtC ++++
  MMETSP0890-20130614|39513_1  93 PNDCSGHGTCEYLED 107
                  689********9973 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.0084
                  TEEEEE--TTCTT CS
   PF00008.22  18 ggytCeCpeGytG 30 
                  ++ +C C  Gyt 
  MMETSP0890-20130614|39513_1 145 KMRICRCDAGYTD 157
                  6679*******96 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0015
                  TCSS--EEEEECCTEEEEE--TTCTTTE CS
   PF00008.22   5 pCsngGtCvdtpgggytCeCpeGytGkr 32 
                   C  +G+C ++      CeC eGytG+r
  MMETSP0890-20130614|39513_1 402 ECGRRGKCDYST---GLCECFEGYTGDR 426
                  577789999995...9**********86 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.53   1.8e+03       1       8 [.      19      26 ..      19      26 .. 0.74
   2 ?    2.7   2.4     0.042   1.4e+02       2      13 .]      76      87 ..      75      87 .. 0.89
   3 ?    8.6   0.1   0.00055       1.9       2       9 ..     149     156 ..     148     156 .. 0.93
   4 ?   11.2   1.4   8.4e-05      0.29       2      13 .]     416     427 ..     415     427 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.53
    PF12661.2  1 kCqCppGy 8 
                 +C+C + +
  MMETSP0890-20130614|39513_1 19 TCTCYANW 26
                 7***7655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.042
    PF12661.2  2 CqCppGyTGdnC 13
                 C C  G+TG+ C
  MMETSP0890-20130614|39513_1 76 CDCFEGFTGKGC 87
                 9999*****988 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00055
    PF12661.2   2 CqCppGyT 9  
                  C+C++GyT
  MMETSP0890-20130614|39513_1 149 CRCDAGYT 156
                  *******9 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 8.4e-05
    PF12661.2   2 CqCppGyTGdnC 13 
                  C+C  GyTGd+C
  MMETSP0890-20130614|39513_1 416 CECFEGYTGDRC 427
                  99********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      189  (0.0138239); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1405.43
//
Query:       MMETSP0890-20130614|39520_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       166  (0.0121416); expected 273.4 (0.02)
Passed bias filter:                      145  (0.0106056); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:00.71
# Mc/sec: 189.01
//
Query:       MMETSP0890-20130614|39525_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-09   35.2   0.0    1.7e-08   33.8   0.0    1.8  2  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    2.8e-07   30.3   0.0    6.2e-07   29.2   0.0    1.6  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    8.9e-06   25.3   0.0    1.8e-05   24.3   0.0    1.5  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   3.7e-12   1.7e-08      14      63 ..       2      51 ..       1      59 [. 0.91
   2 ?   -3.4   0.0       1.5   6.8e+03      12      21 ..     209     218 ..     206     219 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 3.7e-12
                 HHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEB CS
   PF00076.17 14 eLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkk 63
                 e++el +k+G i s+++++  +g ++g+afV+F  + da++ + ++n+  
  MMETSP0890-20130614|39525_1  2 EVRELVEKCGAILSLDIPTSVHGGNRGYAFVTFIHHADAKRFIHTYNNSV 51
                 689*******************************************9954 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.5
                  HHHHHHHHCT CS
   PF00076.17  12 eeeLkelFsk 21 
                  ++ L+++Fs+
  MMETSP0890-20130614|39525_1 209 WSALRDVFSP 218
                  789*****97 PP

>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.4e-10   6.2e-07      14      66 ..       2      56 ..       1      59 [. 0.90

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.4e-10
    PF14259.1 14 dlreffspygkvegvriprnkdgrgrgfAfvefeseedAqkalkkln.lvl.kgr 66
                 ++re+++++g++ + +ip + +g +rg+Afv+f +++dA++++  +n  v+ +g+
  MMETSP0890-20130614|39525_1  2 EVRELVEKCGAILSLDIPTSVHGGNRGYAFVTFIHHADAKRFIHTYNnSVWrGGK 56
                 79******************99***********************9877773554 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.9e-09   1.8e-05       2      53 ..       4      60 ..       3      63 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.9e-09
    PF13893.1  2 yklfskfGkverikifrkk....ggqAfvefdtveaArkakeylngvkl.ygktLkv 53
                 ++l +k+G + +  i  +     +g+Afv+f  +++A++ + ++n+ ++ +gk+L+v
  MMETSP0890-20130614|39525_1  4 RELVEKCGAILSLDIPTSVhggnRGYAFVTFIHHADAKRFIHTYNNSVWrGGKRLYV 60
                 788999999999999877799999************************956689*99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       571  (0.0417642); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.71
# Mc/sec: 1252.18
//
Query:       MMETSP0890-20130614|39523_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-33  116.4   0.0    1.8e-33  115.7   0.0    1.3  1  PF02816.13 Alpha-kinase family


Domain annotation for each model (and alignments):
>> PF02816.13  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   1.3e-37   1.8e-33       1     182 [.      47     231 ..      47     238 .. 0.93

  Alignments for each domain:
  == domain 1    score: 115.7 bits;  conditional E-value: 1.3e-37
                  SB----EEEEEEEE-..........HHHT----EEEEEEE--.---T--HHHHHHHHHHHHHHHH---HHHHT.....--SS--EE---E.EEEETTS--.--EEEEEEE----.-----B-----B-S--SHH.....HHHHHHHHHHTTTS-EEE--B--TTEEBS-EEE-----------------HHHHHH CS
   PF02816.13   1 faeGalrkafrvkdl..........deneesgskyVaKvykk.kaklaeeelyfeevksqliakelakkFnkelqeeenkkkkieflpsllvyelenksk.ekklilvEpflkg.efkKynsnsgkvetkrrseveelaqaFShFtYeesggqllvvdlqgvgdiltDpqihtkdgkgfgtgnlgeegiekFleq 182
                  fa+G lr++fr+k+l            +++++++yVaK++   +++l ee++++ +v++q+ +  +a+ F +      +++k++++++++++  l +  + +++++++E+fl+g  f+K nsn+g vet+r ++     q FS  ++  ++g  +v+d+qgv+d++tDp  ht +g++ g g+lg +g++ F+e+
  MMETSP0890-20130614|39523_1  47 FARGGLRECFRMKKLsqqpnrphihCLGWKNANNYVAKRSLYsSQNLNEESEIKAQVEIQQKCAIIAQAFDAL-----KPPKSVTIVDCFMIQILPHALSpKSEYFFCERFLDGgAFEKHNSNEGSVETQRLTP-----QIFSAASFWLTRGHAMVTDVQGVNDLYTDPCLHTLSGRYGGAGDLGARGMALFFES 231
                  899********************99999************995555999**********************88.....89**********9888777655589**********99*******************.....**************************************988*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       462  (0.0337917); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.42s 00:00:01.42 Elapsed: 00:00:00.72
# Mc/sec: 2126.77
//
Query:       MMETSP0890-20130614|39529_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-25   90.2   1.8      8e-10   39.0   0.3    3.5  3  PF01138.16 3' exoribonuclease family, domain 1
    6.4e-12   45.1   0.1    1.6e-10   40.6   0.0    2.4  2  PF03725.10 3' exoribonuclease family, domain 2
      1e-09   38.2   0.1    2.6e-09   36.9   0.1    1.8  2  PF00575.18 S1 RNA binding domain
    0.00011   21.6   0.0    0.00033   20.1   0.0    1.9  1  PF00013.24 KH domain
  ------ inclusion threshold ------
      0.053   13.1   0.0       0.14   11.7   0.0    1.7  1  PF13014.1  KH domain


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.3   2.9e-13     8e-10      11     132 .]      20     142 ..      13     142 .. 0.85
   2 !   14.0   0.0   1.6e-05     0.044       1      90 [.     333     429 ..     333     450 .. 0.64
   3 !   34.4   0.0   7.6e-12   2.1e-08      51     132 .]     455     534 ..     441     534 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 2.9e-13
   PF01138.16  11 vlsranGSaylelgdtkvlatvtgpieerpseerddaegeldveveyapfasver.....rregr.psdeeielsrlleralrpsillekkpkskididvtvlssdg.gslldalinaaslALadagip 132
                  v + anGS++  +g+t v a+ t         e++  +  l+v+++ +  as+++     rre r p++ e++ sr+++ralrp +    k    i ++++v s+d  + +++++ naas+A   a +p
  MMETSP0890-20130614|39529_1  20 VTPYANGSCVAVQGGTVVHASCTWRCGN---IEENMIP--LTVDFRHKASASGSIpstilRRETRaPNEAETLASRAVDRALRPRFGSASKL-EAIAVSILVQSYDEeHDPIALATNAASAAVSLAEVP 142
                  7899*******************99976...4436667..********************777554999999999***********987664.6777777777777777*************9999887 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.6e-05
   PF01138.16   1 elRplsietgvlsran...GSaylelgdtkvlatvtgpieerpseer.ddaegeldveveyapfasverrre.gr..psdeeielsrlleralrpsi 90 
                  elRpls+  +v +  +   GS  +  g+t+vlat+t++ ++rp++ + d    ++ ++ e     +++rr   g   + +++ e  + l++a++p i
  MMETSP0890-20130614|39529_1 333 ELRPLSALADVFPEVSrthGSGNFARGETRVLATATLDAPPRPRPIDlDTEAHAVRLQHERWRCTTPPRRPArGVlaRHADDLEPTSQLTEAFKPRI 429
                  6788888888665544444**********************99999655433334444443355555553321333333333344455666666655 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 7.6e-12
   PF01138.16  51 ldveveyapfasverrregrpsdeeielsrlleralrpsill.ekkpkskididvtvlssdggslldalinaaslALadagip 132
                  + +++e++  a+++  +    ++++i    l era++++++  e++p + +++ ++vl s+g s  +a+++a+slAL+d+g+p
  MMETSP0890-20130614|39529_1 455 FLLHYEFPASATGAATQ-ASSERRAIGHGALAERAISAVFPSfEQWP-YSVRVNAQVLASNG-SSSMAAVCASSLALYDSGVP 534
                  6789****999999955.456666667777***********879998.**************.******************98 PP

>> PF03725.10  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.076   2.1e+02      31      67 ..     158     195 ..     153     196 .. 0.74
   2 !   40.6   0.0   5.7e-14   1.6e-10       2      67 ..     538     603 ..     537     604 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.076
                  EEEEEETTS.EEEEEEEE-S-..BEHHHHHHHHHHHHH CS
   PF03725.10  31 ldlavagtk.dvvtlmqeggsqeideeslleaielAkk 67 
                  l+l +ag+  ++++ +++g+++++++ ++++a+  A +
  MMETSP0890-20130614|39529_1 158 LNLLLAGNIeRGCLSLELGSNGQLTDAEIVNAMSHALD 195
                  7888888883455556666666**********988876 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 5.7e-14
                  --EEEEEEEETTEEEES--HHHHHH-SEEEEEEEETTSEEEEEEEE-S-....BEHHHHHHHHHHHHH CS
   PF03725.10   2 pvgavtvGkigdkivlDptkeEedlgesdldlavagtkdvvtlmqeggsq..eideeslleaielAkk 67 
                   v++++vG + ++++lD++  E++ g  d+d+++agt++ vt  q++ +q  +++  +l++a+ +A++
  MMETSP0890-20130614|39529_1 538 HVAGISVGAVQGQLLLDLNGTEDHFG--DMDFKIAGTRRRVTAAQLDVKQsaGVPLSQLKKALSMATS 603
                  69********************9999..*************************************987 PP

>> PF00575.18  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.4   1.2e+04      24      41 ..     581     605 ..     580     618 .. 0.62
   2 !   36.9   0.1   9.6e-13   2.6e-09       2      74 .]     735     805 ..     734     805 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.4
                  --.--EEEEEGGGS-CC.......E CS
   PF00575.18  24 lgngvegfipiseissd.......r 41 
                  l+ + ++ +p+s+++         r
  MMETSP0890-20130614|39529_1 581 LDVKQSAGVPLSQLKKAlsmatsaR 605
                  5667788899999986554444443 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 9.6e-13
                  SSTT-EEE--EEEEETTEEEEE--.--EEEEEGGGS-CCEEEECCCCEETT----EEEEE-EEETT.EEEESS CS
   PF00575.18   2 pekGevvkGtVtsvtkgGafVdlgngvegfipiseissdrvedpeevlkvgdevevkvlkvdkerkriiLsik 74 
                   + G++++G++++v ++G +V+l    eg+++ise +    ++  e+l++gd vev v+++d   +++ Ls++
  MMETSP0890-20130614|39529_1 735 VQTGDRLSGVIVDVREYGSLVRLLRSREGLLHISEYKG--APETPETLSIGDSVEVIVIGIDPILGSLKLSRR 805
                  589**********************************6..6****************************9987 PP

>> PF00013.24  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-07   0.00033      11      57 ..     681     727 ..     671     728 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-07
                  CHHH---TTHHHHHHHHHHT-EEEE--SE.EEEEEE.SHHHHHHHHHH CS
   PF00013.24  11 igriIGkgGsnIkeIeeetgakIdvpkdrdtvtisG.dpesvekAkkl 57 
                   + +IG++G +++eIe+++ ++ d + d+  v i + + ++v++A+++
  MMETSP0890-20130614|39529_1 681 LPDLIGPRGVTLREIERKYACSLDTTIDG-EVLIFArNAANVKAARAH 727
                  5789*********************5556.9**************986 PP

>> PF13014.1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.14       5      23 ..     684     702 ..     682     704 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.1e-05
    PF13014.1   5 iIGkgGetIkeIreetGak 23 
                  +IG++G t++eI++++ ++
  MMETSP0890-20130614|39529_1 684 LIGPRGVTLREIERKYACS 702
                  8**************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       566  (0.0413985); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.17u 0.52s 00:00:01.69 Elapsed: 00:00:01.59
# Mc/sec: 1284.09
//
Query:       MMETSP0890-20130614|39539_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   15.5   3.1      0.012   15.2   2.1    1.1  1  PF03427.8 Carbohydrate binding domain (family 19)


Domain annotation for each model (and alignments):
>> PF03427.8  Carbohydrate binding domain (family 19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.1   8.7e-07     0.012      32      52 ..       6      26 ..       3      28 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.7e-07
    PF03427.8 32 tadGkYavCdyGkWvvasCPs 52
                 t+   Y   ++G Wv asCP+
  MMETSP0890-20130614|39539_1  6 TSSDGYCGVEHGSWVCASCPT 26
                 666668889***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.43s 00:00:00.68 Elapsed: 00:00:01.19
# Mc/sec: 82.56
//
Query:       MMETSP0890-20130614|39536_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-14   53.8   1.2    1.6e-14   53.2   0.8    1.3  1  PF00083.19 Sugar (and other) transporter
    8.9e-09   34.4   3.1    8.9e-09   34.4   2.2    1.5  1  PF07690.11 Major Facilitator Superfamily
    8.7e-05   20.9   1.4    0.00012   20.5   0.9    1.2  1  PF13347.1  MFS/sugar transport protein
  ------ inclusion threshold ------
       0.29   11.0   2.4        9.7    6.1   0.0    3.5  3  PF04956.8  TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.8   4.7e-18   1.6e-14     184     405 ..       4     245 ..       1     275 [. 0.75

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 4.7e-18
   PF00083.19 184 llllllflpeSprylvlkgkleeArevlkklrgs............edadqeiqeekdslersreee...........aswkelfsqkt..vrqrlligvvlqifqqltGinaimyYsptifet...lglsksllvtiivg..vvnfvftlvaiflvdrfGRRtllllGlagmaicavflgivvlllvakskaasivaivfillfiaffa.lgwgpvpwvlvsElfpqsvRpkalaiavaanwlanfligllf 405
                  ++++++f+ eSpr+l   g+ ++   vl++l+ +             d    ++ +k+s +++r ++            ++ +l+++k   +   +l +v l + + + G   i  +++ if++    g+s ++   +++g    +++ ++v +fl+dr+GRR+   +  a  a++++ +  + l  +++       + vf +l++a+ + ++  +  wv+v+El+p++vR+++ +i+ +++ l+ f  ++l 
  MMETSP0890-20130614|39536_1   4 FAAMIIFVDESPRWLAQAGQVDRLAIVLSRLDRVnnshkassrtknLDSPLVAAAIKASSKSTRRRTanhektgieafRDIPTLLTRKDlrYITLTLWIVWLGFGLVFYG---ISLLATRIFNNsssDGFSCDFNYGFVLGisTSQIFGVAVLLFLIDRLGRRRSQAWPYALTALALLPV--PILNQNNQ------KISVFACLYLALGSvMCASSASWVHVAELYPTDVRSTGHSIVLTVSRLSAFSTSYLV 245
                  556789****************9999999955444447776655532222233455555555555558889999998888999999988777777777777888888888...67788888876222788888666666663144445555558**********************9999..34444444......4778888888888736778899************************99999988775 PP

>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   2.2   2.6e-12   8.9e-09     189     351 ..      48     239 ..       2     242 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.6e-12
   PF07690.11 189 l..........................rkepaplvpawklllkppvl.w...illialllfffvfsglltllply........lqevlglspglllaglllgllaligaigalllgrlsdrlgrrrrlllallllllaalglallaftssavwlllvlvliGf.glglvfptllalasdlappeerGtasglfntagslgga 351
                  +                          +++  ++++ +  ll+++ l +    l+i++l+f++vf+g++ l + +        +  +++++   + +g  ++ ++++g     +l +l+drlgrrr  ++ ++l++la+l + +l+  + ++ + ++++ + +  + ++++++++ +++l+p++ r t  +++ t++ l+++
  MMETSP0890-20130614|39536_1  48 KnldsplvaaaikasskstrrrtanheKTGIEAFRD-IPTLLTRKDLrYitlTLWIVWLGFGLVFYGISLLATRIfnnsssdgFSCDFNYG---FVLG--ISTSQIFG---VAVLLFLIDRLGRRRSQAWPYALTALALLPVPILNQNNQKISV-FACLYLALgSVMCASSASWVHVAELYPTDVRSTGHSIVLTVSRLSAF 239
                  145555555555555555554333333233344444.444444444431345688888888888888777777742333222224444444...8888..88888888...77999********************************555555.56666777588888****************************99986 PP

>> PF13347.1  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.9   3.5e-08   0.00012     192     352 ..      59     227 ..      52     274 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.5e-08
    PF13347.1 192 itfigtkerraapekkekklplkkaiklllknrpllillllvllvllalflsnglmlYyfkyvlgnt.......glvkllaligtiaallalplipflakklgkkkifflglaiaiigylllfflsteniwlllivvvvaglglgata.alvwsmladvvdygelktGr 352
                  i +++   rr++ +++++ ++ +++i  ll+ + l+ + l+  +v+l++ l    +   ++ +++n+       ++   ++l + +++++++++  fl  +lg+++  ++ +a++++++l + +l+++n  + ++++   +lg  ++a    w  +a+    +   tG+
  MMETSP0890-20130614|39536_1  59 IKASSKSTRRRTANHEKTGIEAFRDIPTLLTRKDLRYITLTLWIVWLGFGLVFYGISLLATRIFNNSssdgfscDFNYGFVLGISTSQIFGVAVLLFLIDRLGRRRSQAWPYALTALALLPVPILNQNNQKISVFACLYLALGSVMCAsSASWVHVAELYPTDVRSTGH 227
                  444444457899999999*************************************************55544333444555588899***************************************9666666666666666666666567777777766666666665 PP

>> PF04956.8  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0028       9.7      51      75 ..      91     115 ..      52     122 .. 0.84
   2 ?    0.1   0.0      0.22   7.5e+02       8      84 ..     189     200 ..     162     215 .. 0.54
   3 ?    1.6   0.1     0.072   2.5e+02      11      33 ..     251     273 ..     246     289 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0028
    PF04956.8  51 gplakviatiaiivaGimlafgrls 75 
                  ++l +++ t+ i+++G++l+f ++s
  MMETSP0890-20130614|39536_1  91 KDLRYITLTLWIVWLGFGLVFYGIS 115
                  45778999*************9988 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.22
    PF04956.8   8 arrlllalllalvllllaspalAqasggdpvetvlqnivdfltgplakviatiaiivaGimlafgrlswralvmvvi 84 
                  + +++                                                                 a++++++
  MMETSP0890-20130614|39536_1 189 KISVF-----------------------------------------------------------------ACLYLAL 200
                  22333.................................................................3333333 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.072
    PF04956.8  11 lllalllalvllllaspalAqas 33 
                   ++++++++++ llas a+A+ +
  MMETSP0890-20130614|39536_1 251 ISTVCAVLTAVSLLASLASAALP 273
                  56788899999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       606  (0.0443242); expected 273.4 (0.02)
Passed bias filter:                      365  (0.0266969); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.42s 00:00:01.19 Elapsed: 00:00:01.11
# Mc/sec: 863.55
//
Query:       MMETSP0890-20130614|39534_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-33  116.0   0.0    2.5e-33  115.2   0.0    1.4  1  PF00069.20 Protein kinase domain
    1.3e-23   83.3   0.0    2.6e-20   72.5   0.0    2.3  2  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
       0.04   13.5   0.8       0.13   11.8   0.5    1.8  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   5.4e-37   2.5e-33       4     183 ..     429     626 .]     426     626 .] 0.89

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 5.4e-37
                  EEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.................HHHHHHHHH-TTB--EEEEEEE..STEEEEEEE--SC-EHHHHHH..HHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHH CS
   PF00069.20   4 leklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.................ElkilkklsHpnivkllevfee..kdelylvleyveggdlfdllk..kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvW 183
                  l +lG+G+ ++V +a +  t + vAvK++  ++  ++ +                        +++++ +  +iv ++++f++     ++ vle+++g +l+d+++  + ++l+++ +  ia   + +l+ lH+n+ +HrD+Kp+N+Lld+k ++k++DFG+++ + ++ + ++t+vgt  +mAPE +  +++y+ ++D+W
  MMETSP0890-20130614|39534_1 429 LGELGRGACASVRRALHVPTLRLVAVKMVAVHDDGKRRQLL--TelaalhqvsaiplqgngSTAMTESKDIAHIVAFYGAFTDpnAGCVCAVLEFMDGRSLHDVMEsrNWQPLDDDALAVIAHGCVHALAVLHQNRQLHRDIKPSNVLLDSKWRVKLSDFGVSRAVDNTLGVARTYVGTLVFMAPERVV-GNDYSFPSDLW 626
                  679***************************99988866533..324677888888888885555555557999**********55555779***************6666788****************************************************9***********************.*********** PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00018      0.82       3      59 ..     428     479 ..     426     484 .. 0.86
   2 !   72.5   0.0   5.7e-24   2.6e-20      54     189 ..     490     626 .]     485     626 .] 0.94

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00018
                  EEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHHHHHHHHHHHHHHHT- CS
   PF07714.12   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeeekeefleeakimkklk 59 
                  +  +lG+Ga ++V ++ +      +   VavK++  +++ + ++++l+e++++++++
  MMETSP0890-20130614|39534_1 428 MLGELGRGACASVRRALHV----PTLRLVAVKMVAVHDDGK-RRQLLTELAALHQVS 479
                  5668*************99....88899******7777766.999*****9999875 PP

  == domain 2    score: 72.5 bits;  conditional E-value: 5.7e-24
                  HHHHT.-BTTB--BEEEBE..SSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHH CS
   PF07714.12  54 imkkl.khpnivkllgvct..keepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvW 189
                  +m++  +  +iv ++g++t  +++ ++ v+e+++g +L++++++++ + l+ + l  +a    ++++ L++++ +Hrd+   NvLl+++  vk+sDfG++r +  d++  + ++    + +mapE +  + ++  sD W
  MMETSP0890-20130614|39534_1 490 AMTESkDIAHIVAFYGAFTdpNAGCVCAVLEFMDGRSLHDVMESRNWQPLDDDALAVIAHGCVHALAVLHQNRQLHRDIKPSNVLLDSKWRVKLSDFGVSRAV--DNTLGVARTYVGTLVFMAPERVVGNDYSFPSDLW 626
                  566666889**********655555******************************************************************************..88889999999**********************9 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   2.8e-05      0.13     100     187 ..     470     581 ..     465     593 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.8e-05
                  HHHHHHHHS--TTSHGGHCTBCTHHHH.................................HHHHHHHHHHHHHCTHHHHHHHHHH...HHHHHHHHHHCSS--EEB-SS-SGGGEEEETTTTEE CS
   PF01636.18 100 ellaalhqadpaadpladflapyltll.................................rllesataalvasellelleeleer...vlaalaallpgaeppvllHgDlhpgNllvdpddgrv 187
                    laalhq+   a pl++ + + +t+                                  +++++++ ++++ +++  l+ +++    +la l++++        lH+D++p N+l+d  ++rv
  MMETSP0890-20130614|39534_1 470 TELAALHQV--SAIPLQGNGSTAMTESkdiahivafygaftdpnagcvcavlefmdgrslHDVMESR-NWQPLDDDA-LAVIAHGcvhALAVLHQNRQ-------LHRDIKPSNVLLD-SKWRV 581
                  568888888..66777766666666665555555555555555555556665555553334444442.444444444.45555544445555555555.......9************.88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       442  (0.0323288); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.38s 00:00:01.36 Elapsed: 00:00:01.13
# Mc/sec: 1315.89
//
Query:       MMETSP0890-20130614|39532_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.3  12.1    2.7e-08   33.3   8.4    1.8  2  PF13639.1  Ring finger domain
    9.9e-08   31.5   9.7    9.9e-08   31.5   6.7    2.4  2  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    2.3e-07   30.2  12.5    6.4e-07   28.8   8.7    1.9  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0003   20.2  12.7     0.0003   20.2   8.8    1.8  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
      0.003   16.9   3.5     0.0079   15.6   2.4    1.7  1  PF13445.1  RING-type zinc-finger, LisH dimerisation motif


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   8.4   9.9e-12   2.7e-08       2      43 ..      49      92 ..      48      95 .. 0.86
   2 ?   -3.6   0.1       3.1   8.6e+03       6      23 ..     115     135 ..     115     135 .. 0.56

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 9.9e-12
    PF13639.1  2 eCaiCldelsegeevvrlpCgHvfHeeCldewl.....rssnsCPlC 43
                 eCaiCld+l    ++v ++CgH+f++eC+ ++      ++s++CP+C
  MMETSP0890-20130614|39532_1 49 ECAICLDTLV---APVSTKCGHIFCAECIVHHAlmfevSRSRKCPCC 92
                 8********5...8****************996455546789***** PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.1
    PF13639.1   6 Cldelse...geevvrlpCgH 23 
                  C++ +++   ++++    CgH
  MMETSP0890-20130614|39532_1 115 CFQLMERdrsQRSAWPHGCGH 135
                  666665544344444566998 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   6.7   3.6e-11   9.9e-08       4      44 ..      49      92 ..      46      97 .. 0.90
   2 ?   -1.1   0.3      0.57   1.6e+03      24      34 ..     150     165 ..     115     170 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3.6e-11
    PF13923.1  4 sCpiCleelenpviltpCgHlyCkkCieqwleks....kkkCPiC 44
                 +C iCl++l  p ++t+CgH +C +Ci +++       ++kCP C
  MMETSP0890-20130614|39532_1 49 ECAICLDTLVAP-VSTKCGHIFCAECIVHHALMFevsrSRKCPCC 92
                 7***********.68*************9877766777889**** PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.57
    PF13923.1  24 lyC.....kkCieqwl 34 
                   +C     ++C+e ++
  MMETSP0890-20130614|39532_1 150 FLCdanqaWNCVEPFF 165
                  2235555588888776 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   8.7   2.4e-10   6.4e-07       1      41 []      50      92 ..      50      92 .. 0.98

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.4e-10
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCS...T-----TTT CS
   PF00097.20  1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvkCPlC 41
                 C+iCl++++ p+ +++C+H fC +Ci+++      ++++kCP C
  MMETSP0890-20130614|39532_1 50 CAICLDTLVAPV-STKCGHIFCAECIVHHALMfevSRSRKCPCC 92
                 ************.****************999999********9 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   8.8   1.1e-07    0.0003       4      47 ..      49      96 ..      46      99 .. 0.91
   2 ?   -3.9   0.1       3.8     1e+04      14      22 ..     127     135 ..     115     137 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.1e-07
    PF13920.1  4 tCvvClereadvlllpCgHlclCeeCaerllk.....rkkkCpiCrspi 47
                 +C +Cl+     + ++CgH+ +C+eC  + +      r++kCp+C s  
  MMETSP0890-20130614|39532_1 49 ECAICLDTLVAPVSTKCGHI-FCAECIVHHALmfevsRSRKCPCCLSAL 96
                 7*******************.******9997689***********8766 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.8
    PF13920.1  14 dvlllpCgH 22 
                  ++    CgH
  MMETSP0890-20130614|39532_1 127 SAWPHGCGH 135
                  444556998 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.4   2.9e-06    0.0079      12      57 ..      49      90 ..      46      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
                 B-TTT-S.-SS....EEEES---EEEHHHHHHHHH...HHHTTT--B--- CS
    PF13445.1 12 aCpiske.qsteqnpPvvLpCGhvisrealeklak...ggrsnkgrfkCP 57
                  C i+ + +      Pv   CGh+++ e++ + a     +    + +kCP
  MMETSP0890-20130614|39532_1 49 ECAICLDtLVA----PVSTKCGHIFCAECIVHHALmfeVS----RSRKCP 90
                 699****9956....***************9988744322....267887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       504  (0.0368637); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.68
# Mc/sec: 1959.37
//
Query:       MMETSP0890-20130614|39542_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-20   72.9   4.0    1.1e-19   70.8   2.8    1.9  1  PF00106.20 short chain dehydrogenase
      2e-08   34.0   1.6    6.4e-07   29.0   0.2    2.2  2  PF08659.5  KR domain
     0.0001   22.2   0.6     0.0002   21.3   0.4    1.5  1  PF13460.1  NADH(P)-binding
     0.0015   18.3   0.5     0.0023   17.6   0.3    1.4  1  PF13561.1  Enoyl-(Acyl carrier protein) reductase
     0.0032   17.6   0.1      0.014   15.5   0.1    1.9  2  PF13241.1  Putative NAD(P)-binding
     0.0062   15.4   0.0       0.01   14.7   0.0    1.3  1  PF02882.14 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
     0.0073   15.5   0.2      0.014   14.6   0.1    1.5  1  PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
  ------ inclusion threshold ------
       0.03   13.8   0.1      0.048   13.2   0.1    1.3  1  PF02737.13 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
      0.031   14.5   0.1       0.06   13.6   0.1    1.4  1  PF00070.22 Pyridine nucleotide-disulphide oxidoreductase
       0.04   12.6   0.2      0.064   12.0   0.1    1.3  1  PF02719.10 Polysaccharide biosynthesis protein
      0.049   12.9   0.0      0.081   12.2   0.0    1.4  1  PF02558.11 Ketopantoate reductase PanE/ApbA
      0.049   13.1   0.3        0.1   12.0   0.2    1.6  1  PF04127.10 DNA / pantothenate metabolism flavoprotein
      0.065   12.9   0.0       0.12   12.1   0.0    1.4  1  PF03446.10 NAD binding domain of 6-phosphogluconate dehydrogenase
      0.078   11.8   0.1      0.086   11.7   0.1    1.2  1  PF01494.14 FAD binding domain
       0.11   11.8   0.2       0.23   10.8   0.2    1.6  1  PF00107.21 Zinc-binding dehydrogenase
       0.11   11.2   0.2       0.15   10.8   0.1    1.2  1  PF03435.13 Saccharopine dehydrogenase


Domain annotation for each model (and alignments):
>> PF00106.20  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   2.8   1.3e-22   1.1e-19       1     166 [.       9     194 ..       9     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 1.3e-22
                  -EEEE---------HHHHHHHHHSSEEEEEEESS.SHHHHHHHHHHHH..H---EEEEEE--..TTSHHHHHHHHHHHHHH----SEEEEE---...........TT-TTCCSC....HHHHHHHHHHHTHHHHHHHHHHHH.....HH---EEEEEECHHHHSSTT.HHHHHHHCHHHCCHHHHHHHH CS
   PF00106.20   1 gtvliTGGlgglGlalArwLveegarhlvlvsrredapgaaeliaele..algaevtvvacD..vadrdalaallaeirkalgpldgvvhnagv...........lddgpleel...tperlervlapkvtgawllheltld.....adlgafvlfSSvagvlgspgqaaYaaakaaldalaesrraeg 166
                  ++v+iTGG++glGla+A +L+++ga ++ ++sr+  + ++a++ +++   a+  ++ ++ +D  va  ++laa+l+++  ++g++d+ + nag+           ++d+p+++     +  l+  l ++ +g+++l + +++     a++g+++l+SS+ag++  pg a Y+a+k++  + ++   +e+
  MMETSP0890-20130614|39542_1   9 KHVVITGGSQGLGLAMATKLAKSGA-RVTIISRS--ESKLAKAKQSILqvAPSSSIITISIDlsVATSNELAAALDTACVSHGRIDVAIANAGTgharlmidgrcAHDSPITSPrsqFDSYLNGLLSLNGRGTINLLTEAANrmsadAKGGRLCLVSSAAGLISLPGYAFYSATKFGHRGVVAGATHEL 194
                  689********************66.88889999..55555554554448899*********999999**************************777776666654455555433335555667888999*****99988888887677****************************999998888776 PP

>> PF08659.5  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   7.5e-10   6.4e-07       3      97 ..      11     105 ..      10     132 .. 0.82
   2 ?    4.1   0.0     0.034        29     128     152 ..     155     179 ..     136     183 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 7.5e-10
                  EEE----SHHHHHHHHHHHH-----EEEEE--.---------HHHHHH----EE.EEE--TTSHHHHHHHH----TTS.---EEEE---------T CS
    PF08659.5   3 yLvtGGlgglGlelarwLaergarhlvllsrsaapdeeaeallaelealgaevt.vvaaDvadrdavealleeveaeepplrGvvhaAgvlrdall 97 
                  +++tGG  glGl++a+ La++gar + ++srs+++ ++a++ + +++     +t  +++ va  ++++a+l+++  ++++++  +  Ag+ + +l+
  MMETSP0890-20130614|39542_1  11 VVITGGSQGLGLAMATKLAKSGAR-VTIISRSESKLAKAKQSILQVAPSSSIITiSIDLSVATSNELAAALDTACVSHGRIDVAIANAGTGHARLM 105
                  69*****************99986.6777888777777777777777654433314566699999**********************999877655 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.034
                  --EEEEEEEGGGT------------ CS
    PF08659.5 128 ldffvlfSSiagvlgsagqanyaaa 152
                     ++l+SS+ag++  +g a y+a+
  MMETSP0890-20130614|39542_1 155 GGRLCLVSSAAGLISLPGYAFYSAT 179
                  456899****************996 PP

>> PF13460.1  NADH(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.4   2.3e-07    0.0002       1      38 [.      11      52 ..      11     105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.3e-07
    PF13460.1  1 IaviGAtGktGrrivkellarghevtalvRnpsklpe....s 38
                 ++++G+++  G +++ +l++ g  vt ++R++skl++     
  MMETSP0890-20130614|39542_1 11 VVITGGSQGLGLAMATKLAKSGARVTIISRSESKLAKakqsI 52
                 79*********************************9864330 PP

>> PF13561.1  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   2.7e-06    0.0023       5      85 ..      17     101 ..      15     181 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.7e-06
                  ------HHHHHHHH---EEEE---HH-----------------.-..----TT..-SGGHHHHHHHHHHH.---BSEEEEEEE--- CS
    PF13561.1   5 dnsigwaiakalaeaGaevilttwvpaklkkkvqelakelpad.v..vplDvt..seedvselaekvkedlggkiDilvhsiansp 85 
                  ++++g+a a +la+ Ga+v++ +++++kl+k+ q++ +  p++ +  +  D++  + ++++  ++++   + g+iD+ +  ++ + 
  MMETSP0890-20130614|39542_1  17 SQGLGLAMATKLAKSGARVTIISRSESKLAKAKQSILQVAPSSsIitISIDLSvaTSNELAAALDTACVSH-GRIDVAIANAGTGH 101
                  59***************************************776546566664214555666666666665.99998877766655 PP

>> PF13241.1  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.6e-05     0.014       6      52 ..       7      51 ..       5      99 .. 0.70
   2 ?   -1.1   0.0       2.4   2.1e+03      54      76 ..     237     259 ..     191     264 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.6e-05
                 TT-EEEEE----.---HHHHHHTT---EEEEE-SS--TT-T....... CS
    PF13241.1  6 kgkkvlvvGgGe.vAarkvrklleagakvtvvspeikeleelvklaee 52
                 k+k+v++ Gg + +++  + kl+++ga+vt++s +  e ++l k++++
  MMETSP0890-20130614|39542_1  7 KDKHVVITGGSQgLGLAMATKLAKSGARVTIISRS--E-SKLAKAKQS 51
                 79******997559*******************99..4.334444433 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 2.4
                  ...-TT--EEEEE--S-HHHHHH CS
    PF13241.1  54 feedlegadlviaatddeelner 76 
                    e++ +a+l+ + t d+e +++
  MMETSP0890-20130614|39542_1 237 SAESVANAALIGIQTGDKEFSNE 259
                  23558888888888888888876 PP

>> PF02882.14  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-05      0.01      34      76 ..       6      48 ..       2      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-05
                 --S-EEEEE---TT---HHHHHHHCTT-EEEEE-TT-ST---H CS
   PF02882.14 34 legkkvvvvGrsnivgkplallLleknatVtvchsktkdlaei 76
                  ++k+vv+ G s+ +g ++a+ L++++a Vt++ ++ ++la+ 
  MMETSP0890-20130614|39542_1  6 WKDKHVVITGGSQGLGLAMATKLAKSGARVTIISRSESKLAKA 48
                 589******************************9998888775 PP

>> PF07991.7  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.7e-05     0.014       3      58 ..       7      62 ..       5      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-05
                 ----EEEE------..-HHHHHHHH----EEE------HHHHHHHH---EE--HHHHH CS
    PF07991.7  3 kekkiaviGyGsqG..haqalnlrdsgldvvvglregsksvekakkdgfevltveeav 58
                 k+k++++ G GsqG   a a++l  sg  v++  r++s +++kak++ ++v+  + ++
  MMETSP0890-20130614|39542_1  7 KDKHVVITG-GSQGlgLAMATKLAKSGARVTIISRSES-KLAKAKQSILQVAPSSSII 62
                 678888777.9**73368999***********999999.8999999999998777665 PP

>> PF02737.13  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.6e-05     0.048      10      44 ..      20      54 ..      10      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.6e-05
                 -----HHHHHCT.SEEEEE-S-HHHHHHHHHHSHH CS
   PF02737.13 10 mGagiAavfaragleVvlvdiseealekaleriek 44
                 +G  +A+ +a++g +V+++ +se++l+ka+++i +
  MMETSP0890-20130614|39542_1 20 LGLAMATKLAKSGARVTIISRSESKLAKAKQSILQ 54
                 577788999**********************9976 PP

>> PF00070.22  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     7e-05      0.06       1      35 [.      10      45 ..      10      55 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7e-05
                 EEEEE---.HHHHHHHHHHHHTTSEEEEEESSSSSS CS
   PF00070.22  1 rvvvvGGG.yiGlElAaalaklgkkVtvierrdrll 35
                 +vv+ GG+  +Gl +A  lak g++Vt+i r++  l
  MMETSP0890-20130614|39542_1 10 HVVITGGSqGLGLAMATKLAKSGARVTIISRSESKL 45
                 67888877469********************98766 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.5e-05     0.064       1      74 [.      11      81 ..      11      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.5e-05
   PF02719.10  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkeklkveivpvigdvrdkerleeale 74
                 v++tG++  +G ++ ++++k+  +++ +++r+E kl + +++  + + ++++   ++++  +v  +++l+ al+
  MMETSP0890-20130614|39542_1 11 VVITGGSQGLGLAMATKLAKSG-ARVTIISRSESKLAKAKQSILQVAPSSSI--ITISIDLSVATSNELAAALD 81
                 79************99988765.6899***************8777777666..33566677888888877776 PP

>> PF02558.11  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.5e-05     0.081       5      47 ..      16      59 ..      12      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.5e-05
                 -----------HHHHHHH-EEEE----.HHHHHH----EEE-SS CS
   PF02558.11  5 GaGaiGsllaakLakagadvtlilrsr.rlealkknglrlksdk 47
                 G+ ++G  +a kLak+ga vt+i rs+ +l++ k+  l++   +
  MMETSP0890-20130614|39542_1 16 GSQGLGLAMATKLAKSGARVTIISRSEsKLAKAKQSILQVAPSS 59
                 6668999********************99999999888876555 PP

>> PF04127.10  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00012       0.1      27      58 ..      17      57 ..       6      99 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
   PF04127.10 27 SSGkmGvalAeaaaerGaeVtlvsgp.velet.........p 58
                 S G  G+a+A+++a+ Ga+Vt++s + ++l++         p
  MMETSP0890-20130614|39542_1 17 SQG-LGLAMATKLAKSGARVTIISRSeSKLAKakqsilqvaP 57
                 444.699****************9773466542222222222 PP

>> PF03446.10  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.12      12      55 ..      20      63 ..      14     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00014
                 ---HHHHHHHH---EEEE--SSHHHHHHHHHTTEEE-SSHHHHH CS
   PF03446.10 12 MGspmalnllkagyevavynrtkekveelvaegakaaesieelv 55
                 +G  ma++l+k+g +v+++ r+++k++++ ++ +++a s + ++
  MMETSP0890-20130614|39542_1 20 LGLAMATKLAKSGARVTIISRSESKLAKAKQSILQVAPSSSIIT 63
                 699**************************999877777665544 PP

>> PF01494.14  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0001     0.086       3      46 ..      10      54 ..       8     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
                 CEEE-----.---HHHHHHHHH.HHEEEEESSSCCCH------BE CS
   PF01494.14  3 dVlIVGaGp.aGlmlallLseaGvrvvlvekhsttvvlprAdgln 46
                  V+I G++   Gl  a+ L++ G rv+++ + +++  + + ++l+
  MMETSP0890-20130614|39542_1 10 HVVITGGSQgLGLAMATKLAKSGARVTIISRSESKLAKAKQSILQ 54
                 5888888752699*********************99999888776 PP

>> PF00107.21  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00027      0.23       1      32 [.      19      50 ..      19     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00027
                 ----HHHHHHHHH--EEEEEESSHHHHHHHHH CS
   PF00107.21  1 GvGlaavqlAkalGarviavdsseeklelake 32
                 G+Gla +  ++ +Garv+++++se+kl++ak+
  MMETSP0890-20130614|39542_1 19 GLGLAMATKLAKSGARVTIISRSESKLAKAKQ 50
                 67777777777788****************98 PP

>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00018      0.15       8      64 ..      19      79 ..      11     102 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00018
   PF03435.13  8 svGqavaellarhgdvdeitvadrtlekaqalaaka....lglrveaialdvsnyea..Leal 64
                 + G a+a +la++g   ++t+++r+++k++++++++     ++ +++i++d s +++  L+a+
  MMETSP0890-20130614|39542_1 19 GLGLAMATKLAKSGA--RVTIISRSESKLAKAKQSIlqvaPSSSIITISIDLSVATSneLAAA 79
                 56788999****986..8***************999999866666666666554433225555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       508  (0.0371562); expected 273.4 (0.02)
Passed bias filter:                      416  (0.0304272); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        16  (0.00117028); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.70u 0.37s 00:00:01.06 Elapsed: 00:00:00.92
# Mc/sec: 877.80
//
Query:       MMETSP0890-20130614|39546_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       262  (0.0191633); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 372.77
//
Query:       MMETSP0890-20130614|39556_1  [L=1086]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.039   14.1   2.6      0.051   13.7   0.2    2.4  2  PF13350.1  Tyrosine phosphatase family
        1.9    7.4   5.7       0.37    9.8   1.3    1.6  2  PF00922.12 Vesiculovirus phosphoprotein


Domain annotation for each model (and alignments):
>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       0.4   2.7e+03      36     108 ..     413     487 ..     401     540 .. 0.64
   2 ?   13.7   0.2   7.5e-06     0.051      83     144 ..     951    1018 ..     917    1030 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.4
    PF13350.1  36 aaLaelgirtvvDLRseeEveke..pdklpegvkyvnlpvlkeeaespeelaerlkeaeeaeeamaelyreiled 108
                  a+L+elg++    L +  E + +  + +l +  ++ +l++ ++ +e++e++++  k+ ++  ++++++y+++ ++
  MMETSP0890-20130614|39556_1 413 AVLNELGVKYTSHLEKYYEHSGDlvQARLDNWRRRARLHLTEDGNEDDERTNSADKKCASRGRSVERHYEDCDDS 487
                  566677777777777777777665444444444555555555555555555555555566666666666665444 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 7.5e-06
    PF13350.1   83 elaerlkeaeeaeeamaelyreiledakkayravlealaeee......gpvlfHCtaGKDRTGvvaal 144 
                   + a++++++ ++++++ +l ++ ++da++a+++v  +l +++      g+  + C++GKDRT +++ l
  MMETSP0890-20130614|39556_1  951 AKAQHADQQIKQWQDLLKLATDAVKDANAAMKNVHVLLTTADlcrsivGSHCICCKSGKDRTSMAVTL 1018
                   223333446689999************99999988887775544212346667899******999887 PP

>> PF00922.12  Vesiculovirus phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.3   5.4e-05      0.37      45     117 ..     129     201 ..     116     215 .. 0.71
   2 ?   -3.6   0.1      0.64   4.4e+03     127     146 ..     956     975 ..     943     983 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.4e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXX..XXXXXXXXXXXXXX CS
   PF00922.12  45 PsYylaeelkeseeeeseeddeslltelppeeevekykespedeildddi....kVvFeedrpWkalvqkevngrkk 117
                   +Y+ + e+++ +eee++e+ e+++++  p+   e+y+++ e    ++      + +F++   W+ +  k+ +g+ k
  MMETSP0890-20130614|39556_1 129 GEYFSELEDDNDDEEEEDEE-EEIQKDRCPPLPPEPYEDDDESVQKEKAApqrrRFFFSK---WNSPAVKTAGGKTK 201
                  48998888877777777777.666666666666799999866666665557764555555...*******9999876 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.64
                  XXXXXXXXXXXXXXXXXXXX CS
   PF00922.12 127 tkkQlsQWeesikalvessk 146
                  +++Q +QW++ +k   +  k
  MMETSP0890-20130614|39556_1 956 ADQQIKQWQDLLKLATDAVK 975
                  68999***997776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1086 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.53u 0.37s 00:00:01.90 Elapsed: 00:00:01.58
# Mc/sec: 1647.12
//
Query:       MMETSP0890-20130614|39568_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.069   11.9   1.5       0.11   11.3   0.6    1.6  1  PF14331.1  ImcF-related N-terminal domain
       0.18   11.5   3.9         10    6.0   0.1    3.2  3  PF04508.7  Viral A-type inclusion protein repeat
        2.5    7.8   5.6        1.3    8.8   0.7    2.3  2  PF01232.18 Mannitol dehydrogenase Rossmann domain
        2.7    7.6   9.2         21    4.7   0.1    3.4  3  PF11471.3  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> PF14331.1  ImcF-related N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   3.1e-05      0.11      94     169 ..       2      75 ..       1      81 [. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.1e-05
    PF14331.1  94 keereqvwGftfpleeskeadaaeafeeefdallerlearlldrlqeerdlerraalyafpqqfaalreplaefle 169
                  +e+r+q++G+  ++e+ +e+ a   +++++++l ++l+++    +   +   +++++ a+ +q+a+ +++la+++ 
  MMETSP0890-20130614|39568_1   2 AEARAQALGALAQQERLREKCA--LYKNRISQLETKLSQQQWIDVPLDSPRSNNNKISALEKQLAKANDRLAALVG 75 
                  689*********9999999998..8***************999999999999*******************99985 PP

>> PF04508.7  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.003        10       6      18 ..      25      37 ..      25      38 .. 0.92
   2 ?    5.0   0.0    0.0067        23       8      18 ..      54      64 ..      54      67 .. 0.89
   3 ?   -1.2   0.1      0.66   2.3e+03      12      19 ..      84      91 ..      80      92 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.003
    PF04508.7  6 lRrkIsdLekqLs 18
                 ++++Is+Le +Ls
  MMETSP0890-20130614|39568_1 25 YKNRISQLETKLS 37
                 69********997 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0067
    PF04508.7  8 rkIsdLekqLs 18
                 +kIs LekqL+
  MMETSP0890-20130614|39568_1 54 NKISALEKQLA 64
                 69********8 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.66
    PF04508.7 12 dLekqLsd 19
                  Le++L++
  MMETSP0890-20130614|39568_1 84 ALESELEE 91
                 58999875 PP

>> PF01232.18  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.085   2.9e+02      39      85 ..      29      74 ..       4     117 .. 0.61
   2 ?    8.8   0.7   0.00037       1.3      59     106 ..     186     233 ..     160     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.085
                 TTHHHHHH---TT-EEEEE---S---EEEE--B-----GGG-.HHHHH CS
   PF01232.18 39 evdareaLkaqdelyvviekgeeskearlvgsvnavlsveed.leali 85
                   +   +L++q+   v + +    ++ ++++++++ l + +d l+al+
  MMETSP0890-20130614|39568_1 29 ISQLETKLSQQQWIDVPLDS--PRSNNNKISALEKQLAKANDrLAALV 74
                 44445666666666666666..55666666666666666555455444 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00037
                  --S---EEEE--B-----GGG-HHHHHHHHTSTT--EEEE------B- CS
   PF01232.18  59 geeskearlvgsvnavlsveedlealieamaePeirivsltvtekGid 106
                  +  +++  +v++ + v++  +++e+++ ++ +P+++  s+t+t++  +
  MMETSP0890-20130614|39568_1 186 QSSNTTPTVVTAQRSVNQEPNENEQVVVELRQPQTASSSSTITKNHSS 233
                  4567777889999999999999*********************95433 PP

>> PF11471.3  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.035   1.2e+02      33      45 ..      28      40 ..      27      41 .. 0.90
   2 ?    4.7   0.1    0.0061        21      36      49 ..      58      71 ..      54      74 .. 0.87
   3 ?    3.7   1.1     0.013        43      33      43 ..      81      91 ..      80     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.035
    PF11471.3 33 RLelLEkeLqenk 45
                 R+ +LE++L++++
  MMETSP0890-20130614|39568_1 28 RISQLETKLSQQQ 40
                 999*******987 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0061
    PF11471.3 36 lLEkeLqenkqeLq 49
                 +LEk+L++++++L 
  MMETSP0890-20130614|39568_1 58 ALEKQLAKANDRLA 71
                 79*********997 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.013
    PF11471.3 33 RLelLEkeLqe 43
                 RL++LE+eL+e
  MMETSP0890-20130614|39568_1 81 RLAALESELEE 91
                 9********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1352  (0.0988882); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.57
# Mc/sec: 1061.83
//
Query:       MMETSP0890-20130614|39571_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-10   41.7   0.1    1.6e-08   34.7   0.0    2.3  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.2e-12   1.6e-08       3     164 .]      34     132 ..      33     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.2e-12
                  --EESS-B----EEEEECCCEEECCCCHH...............----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-S..S.SEEEEEEESTTSSEEEEEESS-B-TT-B-EE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   3 GvfAtedipkGefvceyvgelltddeaekaddagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSC..dpNltvqfvfvtrgprvalrAtrdIpkGeEltidYg 164
                  GvfA+e+i+k++ + ey gell  +   ++               +  ++                                                ++ ++  +    da     +   +NH    + N ++ +v   +++rv ++A+ dI k+eEl++dYg
  MMETSP0890-20130614|39571_1  34 GVFALEEIKKDTYLGEYGGELLDLEKLLER---------------HPSGEP-----------------------------------------------EYAFRVSDTHYLDAENVDFWTKRMNHAYgqEANIRFDIV---DEKRVLFYASTDISKDEELCFDYG 132
                  9**************************993...............444445...............................................7899**********************7744559999999...7**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      297  (0.0217232); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.41s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 940.92
//
Query:       MMETSP0890-20130614|39583_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   13.6   0.0       0.69    9.8   0.0    2.6  3  PF13492.1 GAF domain


Domain annotation for each model (and alignments):
>> PF13492.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.29     4e+03      11      39 ..      10      36 ..       7      57 .. 0.70
   2 ?    9.8   0.0   5.1e-05      0.69       4     105 ..     267     375 ..     265     381 .. 0.79
   3 ?   -0.2   0.0     0.065   8.9e+02      82     122 ..     571     609 ..     497     612 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.29
    PF13492.1 11 ellaeilgaeraalylldedgnelrlvag 39
                 +ll + l+ +r++l  +de g el+   +
  MMETSP0890-20130614|39583_1 10 SLLLQGLETRRCVL--FDESGLELVTLVS 36
                 67778888888887..7888777754433 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 5.1e-05
    PF13492.1   4 ellerilellaeilgaeraalylldedgnelrlvagiggdprlseslpedeplvrrvletgeplsv.......psldnreglpsesllvvPLvageeviGvlvlgsvpe 105
                  ++l++il++    l+  + ++ ll+++gn++  v++ + ++  +++l++++ +  r+++ +++ +        ++++ +++++s ++l++P+ ++  v+Gvl+++s + 
  MMETSP0890-20130614|39583_1 267 SILDKILKISNACLPGCCSYVGLLQPGGNQIAYVSCNSRSQMRGKRLNRGAGVSFRCIGPDRTSFFmindstpDGIQLYDDSTSLPFLCFPVEDNGVVLGVLGIDSIQN 375
                  577777777777777777889999999999999988833333344999999999999999998777777666566788899*************77********99875 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.065
    PF13492.1  82 sllvvPLvage.eviGvlvlgsvpeeafteedlellellasq 122
                    +++PL++ +  ++++++  s    ++t ++l+l e++as 
  MMETSP0890-20130614|39583_1 571 LRYIIPLKVASeNTLAIVIGCS---HNLTSAELDLCEEVASI 609
                  3478999998887777777544...36899999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       319  (0.0233324); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.67
# Mc/sec: 2231.83
//
Query:       MMETSP0890-20130614|39594_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       379  (0.0277209); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.36s 00:00:00.74 Elapsed: 00:00:00.99
# Mc/sec: 254.16
//
Query:       MMETSP0890-20130614|39607_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 288.31
//
Query:       MMETSP0890-20130614|39605_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.80
# Mc/sec: 703.93
//
Query:       MMETSP0890-20130614|39609_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.037   13.7   0.0      0.084   12.5   0.0    1.6  2  PF00027.24 Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00027.24  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.2e-06     0.084      60      87 ..       2      30 ..       1      34 [. 0.92
   2 ?   -1.1   0.0      0.11   1.6e+03      69      86 ..      52      69 ..      31      73 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.2e-06
                 SB-SSEEEE.EEEEEEEEEEHHHHHHHHC CS
   PF00027.24 60 eprsatvva.ltdvevlvipredfrelle 87
                 epr+ t++a l+ v++lv++re+f++ + 
  MMETSP0890-20130614|39609_1  2 EPRASTCIAdLGGVTCLVLDREAFEDAIS 30
                 69***********************9875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.11
                 EEEEEEEEEEHHHHHHHH CS
   PF00027.24 69 ltdvevlvipredfrell 86
                 +t  e +v  ++d+++ l
  MMETSP0890-20130614|39609_1 52 KTSLERYVAAYADLLRAL 69
                 344444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      286  (0.0209187); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.30s 00:00:00.62 Elapsed: 00:00:00.62
# Mc/sec: 289.88
//
Query:       MMETSP0890-20130614|39608_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-51  175.6   0.0    1.4e-51  175.4   0.0    1.0  1  PF00155.16 Aminotransferase class I and II
    0.00094   17.8   0.0      0.002   16.7   0.0    1.5  2  PF04864.8  Allinase
     0.0017   16.5   0.0     0.0022   16.2   0.0    1.2  1  PF01053.15 Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0     3e-55   1.4e-51       3     362 ..      76     408 ..      74     409 .. 0.93

  Alignments for each domain:
  == domain 1    score: 175.4 bits;  conditional E-value: 3e-55
                  --BE--------------HHHHHHHHHHCCCH---B--------CCHHHHHHHHH---HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-HHHHHHHHHCCTTTS-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC..-TCHHHH----EE-----HH......HHHCCH---BE--........---EE-----TTTHHHHHHH CS
   PF00155.16   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                   i L +ne+  +    +  +v        +  ++ln+y+++  ++el+e + k  g      +++e  + vg G++++i++l+++++ ++ +e l+  pty++yk ++ ++++++ + pl+ +e+f +d+ ++++ +++       t++v+v+sp NPt  + +++ l +ll    +   ll+vDeaY +f  g+    +  ++v ++  l+++ +lsKafGlaG R+G +++++++++ +++l++p+++ s++++++ +alsd +     ++ +   l ++r++l ++L +l    kv++s+++++l+   +a +ak l+k L++   v+ ++g +++++g+lRitv  +t+ +++ l+++
  MMETSP0890-20130614|39608_1  76 GILLDANENAVG----PALAVSDGLVS-TEIISSLNRYPDPY-QKELKELVGKMRG------VNHE-HIFVGVGSDEAIDLLFRVFCEPRRSECLIMPPTYGMYKVCAAANDIQILSAPLE-PETFDIDVTKVLKTVTS------ATRLVFVTSPGNPTSRLVSRDRLLELLLKLPR-TTLLIVDEAYLDFGQGEN--LSMSPLVHQYSRLVVLHTLSKAFGLAGARLGTAIAHPDIIRLMNNLKAPYNINSITSKIACQALSDLK----PVQSTINLLLEQRESLAKALLALpyVEKVYPSDANFLLVKFKPANRAKLLYKTLADAGVVVRFRGDQMHCSGCLRITV--GTKTDNDALLSK 408
                  577888888888....66666666666.9999**********.*************......9999.*******************99999****************************77.9****************......899***********************766665.9***************65..244899999999******************************************************77....89******************999*8899***********999999************999******************..999999988876 PP

>> PF04864.8  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.4e-07     0.002      53     209 ..     114     286 ..     105     313 .. 0.74
   2 ?   -3.6   0.0      0.67     3e+03     292     360 ..     343     411 ..     342     412 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.4e-07
    PF04864.8  53 kelhevvGnaa.tddryivvGtGstqLlqalvyalspeasseskpvkvvaavPyysvykeqtslldsklykweGdaaayv.......kkknpeefielvtsPnnPdgll..reavv.....kgskakviyDlayY......WPhytpitskadedimLftlskltGhaGsrlGWalvk 209
                  kel e+vG    +++ +i vG+Gs + ++ l   +        + ++ +   P y +yk  +   d + +    + +++        k+ ++   + +vtsP nP ++l  r+ ++        ++ +i+D ay           +p+ ++    ++L tlsk  G aG+rlG a+ +
  MMETSP0890-20130614|39608_1 114 KELKELVGKMRgVNHEHIFVGVGSDEAIDLLFRVFCEP-----RRSECLIMPPTYGMYKVCAAANDIQILSAPLEPETFDidvtkvlKTVTSATRLVFVTSPGNPTSRLvsRDRLLelllkLPRTTLLIVDEAYLdfgqgeNLSMSPLVHQYSRLVVLHTLSKAFGLAGARLGTAIAH 286
                  67888888875378889999999999887665555444.....555667778999999988877776666544444444333444447888888999*********9985555666555543456678*****97322211235899999***********************99865 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.67
    PF04864.8 292 yfkkvrepsPayaWlkcekee.dedcaevlrekkiltr.sGevfeadsryvrlsllkrdddfdvllerlkk 360
                  y++kv ++   +  +k +  +  + ++++l +++++ r  G+++ + s + r+++  +++d d ll++l++
  MMETSP0890-20130614|39608_1 343 YVEKVYPSDANFLLVKFKPANrAKLLYKTLADAGVVVRfRGDQMHC-SGCLRITV-GTKTDNDALLSKLNQ 411
                  6666777777777777775440455688888887777635777666.45778864.666777888888765 PP

>> PF01053.15  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.9e-07    0.0022      51     181 ..     107     243 ..     103     350 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.9e-07
                  TT--HHHHHHHHHHHHHCT-.SEEE-B----.HHHHHHHHCCS--.--EEEEESS----...HHHHHHCCHHH---EEEEESTTCHHHHHHHTTTTEEEEEEESSBTTTTB---HHHHHHHHHHCS.S-EEEEE-TTT CS
   PF01053.15  51 RsgnPtrevleeriaaLegg.eaalavsSGm.aAiaaallallka.GdevvatddlYgg...tqrllekvlkklgvevkfvdtsdleelekaikpntklvylEtptnpllkvvDieaiaklakkkg.dvlvvvDntfa 181
                  R+ +P ++ l+e + ++ g+ ++ ++v  G   Ai+  ++ +++   +e +++   Yg    + +  +  +    +e + +d  d+ ++ k +++ t+lv++ +p+np+ ++v   ++++l  k    +l++vD +++
  MMETSP0890-20130614|39608_1 107 RYPDPYQKELKELVGKMRGVnHEHIFVGVGSdEAIDLLFRVFCEPrRSECLIMPPTYGMykvCAAANDIQILSAPLEPETFDI-DVTKVLKTVTSATRLVFVTSPGNPTSRLVSRDRLLELLLKLPrTTLLIVDEAYL 243
                  67777777777777777777323344445542566666666666544555555555544222555555566666777778887.788999999**************************999888668999***9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      303  (0.0221621); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.77
# Mc/sec: 1335.11
//
Query:       MMETSP0890-20130614|39622_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.59
# Mc/sec: 1295.66
//
Query:       MMETSP0890-20130614|39629_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23   11.2   2.4       0.35   10.6   0.1    2.4  2  PF09007.6 EBP50, C-terminal


Domain annotation for each model (and alignments):
>> PF09007.6  EBP50, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.5e-05      0.35       2      30 ..       8      36 ..       7      38 .. 0.86
   2 ?   -1.5   0.3      0.16   2.2e+03      13      21 ..     184     192 ..     178     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.5e-05
                 ----HHHHHHGGGGGTT--------S--- CS
    PF09007.6  2 pgleLnlsaaeAkekakqkrskKrAPqMD 30
                 pg + ++   +A+e  + +r+  +AP MD
  MMETSP0890-20130614|39629_1  8 PGGNQSVAIRAAQEVSRLMRETPKAPEMD 36
                 55566778889*****************9 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.16
                  GGGGTT--- CS
    PF09007.6  13 Akekakqkr 21 
                  A+ek kqk 
  MMETSP0890-20130614|39629_1 184 AEEKNKQKI 192
                  899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       964  (0.0705091); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.37s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 763.84
//
Query:       MMETSP0890-20130614|39644_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-08   33.5   0.0    7.4e-08   32.5   0.0    1.6  1  PF00300.17 Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.024   14.3   0.1      0.048   13.3   0.0    1.4  1  PF01568.16 Molydopterin dinucleotide binding domain
      0.088   12.6   0.0       0.16   11.7   0.0    1.4  1  PF08389.7  Exportin 1-like protein


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.6e-11   7.4e-08       1     158 []      99     304 ..      99     304 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.6e-11
                  EEEEEE---BHCC...CTTB.......................GGGTCC...--B-----HHHHHHHTHHHH...............TTHCESEEEEESSHHHHHHHHH.HCC....CCEEEEEE.GGGSHHHH.----TTCHHHHHHHHHCHHHHHHHHCCTSTTTSS.....CHHHHHHHHHHHHHHHHHHCTTTSEEEEEE-TTHHHHH CS
   PF00300.17   1 rlylvRHGeseln...kegr.......................lqgwsd...vpLtekGreqarelgkkLkr...............adlqidavytSplkRaiqTaei.lle....eldipiiqeprLrerdf.geweglpkaevkeelpeeyekwkrdkkefrppege....sladvyeRvapfleelieakdkgenvlivsHggvlral 158
                  rl+l+RHGese+n   +  +                       l+ +s    +pL+e G +qa+el + + +               ++ ++  + tS+l+R++qT+ + l      + d ++     L+e++   +   l+ +  +  l  +  ++ +d+++f   ++           +R+++f e+++  +++++ +l+ +H  + r++
  MMETSP0890-20130614|39644_1  99 RLVLIRHGESEWNnvfN--IgpkifvpikailalareflmvlqLSPNSIfydSPLNESGLRQAEELDEIFYNyndpsapgyeeilkiNKGNCV-YATSTLRRSVQTIVLaLKTrlenNRDDKVLLLSSLQEISTnVDTLALTPPLKSPVL-PNISEFLTDPERFDASGNSgnklLRGNGLQRMQAFAEWVF--TRDEDLILVGGHSLWFRSF 304
                  69*********985441..15566777777788888888887644444477459*************98666677888888866654444444.88**********87744444443555999999999999993333345544444444.4888888888888888333222222344679999999999..6888888999999888875 PP

>> PF01568.16  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.048      34      74 ..     314     354 ..     313     368 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
                  EHHHHHH-------EEEEEESSEEEEEEEEEESSB----EE CS
   PF01568.16  34 npedaaalgikdGdlVevesrrGsvvvkakvtervrpgvvf 74 
                  np da+ ++i++G  V ++ +rG++   +++ +r+ p++++
  MMETSP0890-20130614|39644_1 314 NPFDARNMKIANGAVVAITLERGTIDDSVAIQYRIDPDSIV 354
                  89***********************************9984 PP

>> PF08389.7  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.16      75     144 ..     194     261 ..     189     264 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.4e-05
                  HCHHHHHHHHHHHHHHHC-TT-...HHHHHHHHHHHHHHCTTS-CHHCHCS.HHHHHCHHCCSCCCHHHH CS
    PF08389.7  75 llrsqvqkilelllqileqsvskksselveatLkclsswvswidiglivnspllsllfqlLndpelreaA 144
                  +lr +vq+i+  l   le+++++  + l+ ++L+ +s  v+ + ++  ++sp+l+ ++++L+dpe ++a+
  MMETSP0890-20130614|39644_1 194 TLRRSVQTIVLALKTRLENNRDD--KVLLLSSLQEISTNVDTLALTPPLKSPVLPNISEFLTDPERFDAS 261
                  799******************97..8**************************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       393  (0.0287449); expected 273.4 (0.02)
Passed bias filter:                      349  (0.0255266); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.38s 00:00:01.06 Elapsed: 00:00:00.76
# Mc/sec: 1169.80
//
Query:       MMETSP0890-20130614|39663_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00017   20.3   0.8    0.00019   20.2   0.6    1.0  1  PF07690.11 Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.036   12.5   0.3      0.037   12.5   0.2    1.0  1  PF00083.19 Sugar (and other) transporter
       0.08   12.0   0.0       0.22   10.6   0.0    1.7  2  PF09472.5  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)


Domain annotation for each model (and alignments):
>> PF07690.11  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.6   4.1e-08   0.00019      87     144 ..       8      65 ..       5      66 .] 0.96

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.1e-08
   PF07690.11  87 alllvlrvlqGlgagalfpagaaliadwfpkeergralgllsagfslGailgpllggl 144
                  al++++r+ +G+ +g+ + + +++i + +++e+ ++ ++ +++ + lG+++gp +g++
  MMETSP0890-20130614|39663_1   8 ALVILARLTSGIWTGGKMVIEQTYIGEAAAPERNTKITSEVGVYAVLGFVVGPSIGAV 65 
                  589****************************************************985 PP

>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   8.1e-06     0.037     103     158 ..       8      63 ..       2      66 .] 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.1e-06
   PF00083.19 103 wvlivgRvivGlgvGlisvlvPmyisEiApkklrgalgslyqlaitvGilvaaiig 158
                  +++i++R+ +G+  G+  v+  +yi+E A ++   +++s   +  ++G++v+  ig
  MMETSP0890-20130614|39663_1   8 ALVILARLTSGIWTGGKMVIEQTYIGEAAAPERNTKITSEVGVYAVLGFVVGPSIG 63 
                  689**************************887777888888888888888775554 PP

>> PF09472.5  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.36   1.6e+03      32      38 ..      14      20 ..      11      24 .. 0.75
   2 ?   10.6   0.0   4.8e-05      0.22      29      48 ..      40      59 ..      38      65 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.36
    PF09472.5 32 kLesGve 38
                 +L+sG+ 
  MMETSP0890-20130614|39663_1 14 RLTSGIW 20
                 6889885 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4.8e-05
    PF09472.5 29 RdqkLesGveatgilGlaiG 48
                 R++k +s v   ++lG+++G
  MMETSP0890-20130614|39663_1 40 RNTKITSEVGVYAVLGFVVG 59
                 9******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 263.60
//
Query:       MMETSP0890-20130614|39665_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0024   17.6   0.0     0.0034   17.2   0.0    1.2  1  PF03109.11 ABC1 family
     0.0061   16.3   0.2     0.0065   16.2   0.1    1.1  1  PF13054.1  Protein of unknown function (DUF3915)
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.022   14.8   0.0    1.1  1  PF07898.8  Protein of unknown function (DUF1676)


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.6e-07    0.0034      79     119 .]       2      43 ..       1      43 [. 0.92

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.6e-07
   PF03109.11  79 lvdelskelaeeldfkrEAknaekfrenfakl.kevkvPkvy 119
                  ++de  +  ++eld++ EA+n +k+ + fak   +v+vP+v+
  MMETSP0890-20130614|39665_1   2 IMDEQCEAFPRELDLRLEAANIRKAINLFAKHgINVRVPNVI 43 
                  68899999*********************99989*****985 PP

>> PF13054.1  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.4e-06    0.0065      48     116 .]      33     101 ..       3     101 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
    PF13054.1  48 iGteislltlkgngtfrnvifeGfanGvalfsalardddkdnnkddknnqnrnkftGllrvcpedivai 116
                   G ++ + ++ ++ +   v+ + f+ G +l s ++ ddd  n  + + ++n+++     r   +d++ i
  MMETSP0890-20130614|39665_1  33 HGINVRVPNVIDELSSSSVMTQTFCTGSTLASLFSDDDDDKNISNGRTKKNETRQALCRRRAKDDLIQI 101
                  37788888999999999*************999888877778888899999999888888888888865 PP

>> PF07898.8  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.8e-06     0.022      52     101 ..      19      86 ..       4      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.8e-06
    PF07898.8  52 dkllldrlerflasHsLqvklpeatgagavsra..................derreveeaRgkkkklk 101
                  + + ++++ +++a H+++v++p+  ++ + s+                   d++++++ +R kk   +
  MMETSP0890-20130614|39665_1  19 EAANIRKAINLFAKHGINVRVPNVIDELSSSSVmtqtfctgstlaslfsddDDDKNISNGRTKKNETR 86 
                  4566899****************9999998888999*************************6666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 445.64
//
Query:       MMETSP0890-20130614|39661_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.4   0.0    1.7e-08   34.0   0.0    1.1  1  PF00117.23 Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> PF00117.23  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.2e-12   1.7e-08      12     179 ..      22     192 ..      15     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.2e-12
                  HHHHHHHHTT-EEEEEETTGGHHHHHHTTT--SEEEEE----TTTT....-CCHHHHHHHHGT.TTS-EE------HHHHHH-TTEEETTC.CSEEEEEEEEEETTT.....SCCCTTTTSEEEEEE-ESEEECSGHHHHTTEEEEEEESSS-EEEEEEECSSS.BEEESSBTTCTTS- CS
   PF00117.23  12 nleralrelgvkvevvpndadaeeileklsnpdgilisgGpgspge....vegkieaikeare.nkiPiLGICLGmQllaiefggkvikekkeehmggnmrlghdgk.....aallyglpnevivrhrHsyevnekellpeglevtaksedggeimaivekknp.ivgvQFHPEssstp 179
                   +  ++ +++   ++v+ da+  e+ ++  ++ +++i g   + ++    +e   e i+ +++  k+ +  +C+G Q++a ++gg+v ++  ++    + ++ + ++     +   + lp++      H+y v +    pe+ +++a+s  g+ ++     k++ i+ +Q HPE+ +t 
  MMETSP0890-20130614|39661_1  22 KVWSQALKIN---DLVKFDATRGEVPSESDDFSAVVITGSHYNISDqlpwMETLYEYIRLCASrPKVRVVAVCFGCQAVATALGGRVTPNP-YGRFRVTREVLSIDNaawscIFDNDRLPSSAALLAAHGYLVAQ---RPEDSVLLATS-GGSPNELFLAGKYNnIICCQAHPEFEPTM 192
                  5555555555...4455555444443346789999999999999889666666666666655567999********************999.88888888888766679944444456788999999*******9...89987777777.664555555555566**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       309  (0.0226009); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.41s 00:00:00.93 Elapsed: 00:00:00.69
# Mc/sec: 878.66
//
Query:       MMETSP0890-20130614|39685_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.0   0.0      0.004   16.6   0.0    1.2  1  PF00782.15 Dual specificity phosphatase, catalytic domain
      0.007   15.7   0.0     0.0092   15.3   0.0    1.4  1  PF05706.7  Cyclin-dependent kinase inhibitor 3 (CDKN3)
  ------ inclusion threshold ------
       0.01   15.0   0.0      0.011   14.9   0.0    1.2  1  PF00102.22 Protein-tyrosine phosphatase
       0.02   14.1   0.0      0.031   13.5   0.0    1.2  1  PF13458.1  Periplasmic binding protein
      0.038   13.9   0.0      0.063   13.2   0.0    1.3  1  PF00665.21 Integrase core domain
      0.044   13.9   0.1       0.13   12.4   0.0    1.6  2  PF13350.1  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> PF00782.15  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.7e-06     0.004      11     113 ..      41     144 ..      33     164 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.7e-06
                  HHHHHH----EEEETTSSSSEE....ECCTT---EEEE-----STT--CGGGHHHHHHHHHHHCC----EEEE-----HHHHHHHHHHHHHHCT-HHHHHHHHHHHH CS
   PF00782.15  11 lalleklgitlvinvtkevpkn....nadkkseieylripvedetetkiskeleeavefiekaeqkgkkvlVHCqaGisRSatliiaYlmktknlslneAyefvker 113
                   ++++ +gi+ ++++    +++    + d+  e++ +++      +++ ++ +    e +++a+  ++k+++HC  G+ R       +l  ++ ls ++A++ v + 
  MMETSP0890-20130614|39685_1  41 VEFMQSQGIKRILSLLGDDEAEwyasHYDALMERHGFKVMRTSVFKENAADVM---EEALKAAALAEEKIVIHCSGGAGRATLGLGFWLCIRYDLSPEDAIAEVLQS 144
                  56777777777777775555545444333333444444443334444444444...45678899999*************999999999999999999999887443 PP

>> PF05706.7  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.1e-06    0.0092     119     168 .]      89     138 ..      36     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.1e-06
    PF05706.7 119 cleimee.latclknyrktlihcygglgrsclvaaclllylsdsispeqai 168
                  + ++mee l ++   + k +ihc gg gr+ l    + l +   +spe+ai
  MMETSP0890-20130614|39685_1  89 AADVMEEaLKAAALAEEKIVIHCSGGAGRATL-GLGFWLCIRYDLSPEDAI 138
                  56788874666777889***************.777778888889999987 PP

>> PF00102.22  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     5e-06     0.011     154     195 ..      88     129 ..      41     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5e-06
                  HHHHHHHHHHHHSSTTSS-EEEES------HHHHHHHHHHHH CS
   PF00102.22 154 slldlirkvrksktaksgpvvVhCsaGvgRtgtfvaldille 195
                  +  d+++++ k  +  ++++v+hCs G+gR+   +  +++++
  MMETSP0890-20130614|39685_1  88 NAADVMEEALKAAALAEEKIVIHCSGGAGRATLGLGFWLCIR 129
                  445777777777788899*************99988888875 PP

>> PF13458.1  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.031     115     202 ..      30     116 ..      22     120 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
                  ---HHHHHHHHHHHHHH.-----EEEEEESS----HHHHHHHHHHH-----B---EEE-TT----HHHHHHHHH.----EEEE-----H CS
    PF13458.1 115 gatysqqasalvdylakelggkkvalvgsdyaygregiaalraalkaaGgevvgeeyvplgttdfssqvaqika.agpdavlltgwgad 202
                  ga ++++++a+v++ ++ +g+k++  +  d+ + + ++  + a+++++G++v  +  +  +++d+ + +++++a a   +v+ +++ga+
  MMETSP0890-20130614|39685_1  30 GAVADSDVDAWVEF-MQSQGIKRILSLLGDDEA-EWYASHYDALMERHGFKVMRTSVFKENAADVMEEALKAAAlAEEKIVIHCSGGAG 116
                  7788999******8.7889******99888855.558999**********************999888888877356666777777765 PP

>> PF00665.21  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.8e-05     0.063      54     110 ..      38      94 ..      31     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-05
                  HHHH.HHHHS--SE...EE-----TTTSHHHHHHHHH---EEE----S-TTT---HH CS
   PF00665.21  54 dlleraverrggkepkrllsDngseftskafeallkelgikhkftrpyrpqdngkvE 110
                  d+++++++++g k++++ll D  +e  ++++ al++++g+k+ +t + + +   ++E
  MMETSP0890-20130614|39685_1  38 DAWVEFMQSQGIKRILSLLGDDEAEWYASHYDALMERHGFKVMRTSVFKENAADVME 94 
                  78889999************************************9987776666665 PP

>> PF13350.1  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.036        83      35      79 ..      41      90 ..      31      99 .. 0.67
   2 ?   12.4   0.0   5.5e-05      0.13      97     141 ..      76     121 ..      52     144 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.036
    PF13350.1 35 laaLaelgirtvvDLRseeEvekepdklpe.....gvkyvnlpvlkeeae 79
                 ++ +++ gi++++ L  ++E+e  ++   +     g+k+++ +v+ke+a+
  MMETSP0890-20130614|39685_1 41 VEFMQSQGIKRILSLLGDDEAEWYASHYDAlmerhGFKVMRTSVFKENAA 90
                 67788999************999865555411144666666666665554 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.5e-05
    PF13350.1  97 amaelyreileda.kkayravlealaeeegpvlfHCtaGKDRTGvv 141
                   ++ + +++ +++ ++ ++++l+a a +e+++++HC+ G  R+ ++
  MMETSP0890-20130614|39685_1  76 GFKVMRTSVFKENaADVMEEALKAAALAEEKIVIHCSGGAGRATLG 121
                  3333444444444589999********************9997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.79
# Mc/sec: 527.81
//
Query:       MMETSP0890-20130614|39691_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   38.2   0.0    4.2e-10   38.1   0.0    1.0  1  PF13844.1 Glycosyl transferase family 41
     0.0018   18.3   0.0      0.003   17.5   0.0    1.3  1  PF13692.1 Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF13844.1  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   6.1e-14   4.2e-10     361     435 ..      11      85 ..       5     106 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 6.1e-14
    PF13844.1 361 ladvcldtplcnGhttgmdvlwaGtpvvtlpletlasrvaasqltalGvpelvakdreeyediavklGtdkeylk 435
                  +a + ldt    G  t++d +  G+p+vtlp      r aas  + +  + lva+d +++++i ++lGtd+++  
  MMETSP0890-20130614|39691_1  11 IATLVLDTYPYGGCLTALDAMSNGVPLVTLPSTFERGRFAASIYAQMNFTHLVARDADDFISIVTRLGTDATFRD 85 
                  78899***999***********************************************************98755 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.4e-07     0.003      64     133 ..       5      78 ..       3      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.4e-07
    PF13692.1  64 laellasadvglaplrfgeglplKlleylaaGlPvvasdi....g..aeglpeeegvgglvaddpeelaealvrll 133
                  + e+l+ a ++l ++ +g   +l  l++++ G+P v+ +     g  a++++ + +   lva d+++++  ++rl 
  MMETSP0890-20130614|39691_1   5 YIEILSIATLVLDTYPYGG--CLTALDAMSNGVPLVTLPStferGrfAASIYAQMNFTHLVARDADDFISIVTRLG 78 
                  78999999****9999876..689*************887554437777788888888999*******99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      207  (0.0151404); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.50s 00:00:00.76 Elapsed: 00:00:00.65
# Mc/sec: 423.97
//
Query:       MMETSP0890-20130614|39695_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.50s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 664.13
//
Query:       MMETSP0890-20130614|39705_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-06   27.5   0.0    3.5e-06   26.8   0.0    1.4  1  PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
      2e-06   27.1   0.0    3.6e-06   26.3   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00031   20.4   0.0    0.00053   19.6   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Domain annotation for each model (and alignments):
>> PF14259.1  RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.6e-10   3.5e-06       1      67 [.      33      99 ..      33     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.6e-10
    PF14259.1  1 lyvrglppsvteedlreffspygkvegvriprnkdgrgrgfAf.vefeseedAqkalkkln.lvlkgrt 67
                 ++v++++ sv ++d+r++f+ +g++++v   +n  g g++  + ++f++ ++A+kal   +   l+gr+
  MMETSP0890-20130614|39705_1 33 VIVKNISASVAAQDVRALFATAGNIKKVVSSLN--GSGSTATYeIDFADGDSARKALYEFDqRTLDGRK 99
                 78*****************************99..555444335****************99*****97 PP

>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     8e-10   3.6e-06       1      69 [.      33     100 ..      33     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 8e-10
                  EEEESSTTTSSHHHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17   1 lfVgnLppdvteeeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                  ++V+n++ +v  ++++ lF   G i+++  +  +   s+ +  ++F++ ++a+kAl + + ++l+gr++
  MMETSP0890-20130614|39705_1  33 VIVKNISASVAAQDVRALFATAGNIKKVVSSL-NGSGSTATYEIDFADGDSARKALYEFDQRTLDGRKM 100
                  68***********************8888888.5777777778************************86 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-07   0.00053       2      53 ..      48     102 ..      47     104 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.2e-07
    PF13893.1   2 yklfskfGkverikifrkk...ggqAfvefdtveaArkakeylngvklygktLkv 53 
                  ++lf+  G++++++   ++   + ++ + f++ ++Arka+  ++ + l+g++++ 
  MMETSP0890-20130614|39705_1  48 RALFATAGNIKKVVSSLNGsgsTATYEIDFADGDSARKALYEFDQRTLDGRKMNL 102
                  789************88888888999**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.39s 00:00:00.82 Elapsed: 00:00:00.92
# Mc/sec: 518.34
//
Query:       MMETSP0890-20130614|39706_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-23   82.0   0.4    3.9e-23   81.6   0.3    1.2  1  PF04628.8 Sedlin, N-terminal conserved region
  ------ inclusion threshold ------
      0.075   12.6   0.1       0.11   12.1   0.0    1.3  1  PF04099.7 Sybindin-like family


Domain annotation for each model (and alignments):
>> PF04628.8  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.3   5.7e-27   3.9e-23       1     130 [.      35     162 ..      35     163 .. 0.91

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 5.7e-27
    PF04628.8   1 iiskkdnplyelefssakeesekekellqfiahasLDiveerqwk..atgelylgkvdkfeelavsafvtttklkflllhelsdskkkdedirqffqevhelyvktllNPFyeen.epikspaFdarvkklak 130
                  +++kk+np++ + ++ + e+       ++ ++++s+Div+e +++  + ++ ylg + +++e++v +++t t++kf++++  +++ ++++d+r+ff++ h++y+  +lNPF   + ++i+s++F ++++++++
  MMETSP0890-20130614|39706_1  35 VLGKKNNPIFLRCIEAYDEKR----MYFESLVFCSMDIVDECIERkaHVHDRYLGFLCPIDEYQVFGYMTSTHIKFMVILF-DENLVQESDLREFFRQAHNAYIAHMLNPFNPIDaDQISSQRFITSIDNAVE 162
                  789********9999988876....559*************9999777899*************************99998.8999*************************9765269*********998875 PP

>> PF04099.7  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05      0.11      73     142 ..      91     163 ..      60     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
    PF04099.7  73 dtfkLhclqtltGiKfvlitdtktnaeadsllrkiyelYsdyv..lknPfyslem.pircelFdeklkelles 142
                  d+++++ + t t iKf++i  +++  +   l + + + +  y+  + nPf  ++   i ++ F + +++++es
  MMETSP0890-20130614|39706_1  91 DEYQVFGYMTSTHIKFMVILFDENLVQESDLREFFRQAHNAYIahMLNPFNPIDAdQISSQRFITSIDNAVES 163
                  78999***********8876555544444455555555555553355******9747***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       457  (0.033426); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:01.26
# Mc/sec: 443.14
//
Query:       MMETSP0890-20130614|39711_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.14   11.4   0.0    1.1  1  PF01575.14 MaoC like domain


Domain annotation for each model (and alignments):
>> PF01575.14  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     1e-05      0.14      56     115 ..       1      61 [.       1      68 [. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1e-05
                  -HHHHHHHHHHHHHHSTT.EGGGEEEEEEEE-S--BSS-EEEEEEEEECCEEEEEEEEECE CS
   PF01575.14  56 mltlaivralveeqladn.vvarlgewkvrFtkpVlpgdtlrvevevvgkrdgketkkvea 115
                  m  ++i+++++++    + v+a ++++++ F++      + ++  +++ +rdg++t++  +
  MMETSP0890-20130614|39711_1   1 MTFASIISKATVSNCSSSpVIAVVTSKTCLFLGAIPSKPRAKFACWKTTSRDGAKTRTALV 61 
                  66789**********9999**********************************99866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 345.24
//
Query:       MMETSP0890-20130614|39722_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-28   97.6  13.4    8.6e-28   96.8   9.3    1.3  1  PF01758.11 Sodium Bile acid symporter family
    3.2e-15   55.9  17.9    4.1e-15   55.5  12.4    1.2  1  PF13593.1  SBF-like CPA transporter family (DUF4137)


Domain annotation for each model (and alignments):
>> PF01758.11  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   9.3   1.3e-31   8.6e-28      15     178 ..       1     155 [.       1     162 [. 0.90

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 1.3e-31
   PF01758.11  15 vevedlkellkrpkalllglvlqwvikPllmfilailllrllpelavGliLvglapggamsnvwtylakGdlelsvvlvalstllallvapllslllagslldvgavsileliksvliyviiPliaGiltryilprekfekkllkvlspisligllltivvifa 178
                  ++ +d+ ++ +rp  +l+ ++l +  +P+l+ il+ + ++l p+l++Gl+Lvg+  gg++sn+ ty+a+G+++lsv +++++t+ a++++p+l   ++g+ ++v+   +l ++ s+l++v+ P+i G+  + i p  k+ kk+++vl++i + +   t +++ +
  MMETSP0890-20130614|39722_1   1 MTPKDFVRVASRPGSVLVNFLLCYGFMPMLGLILG-KTFQLEPALVAGLVLVGSINGGQASNLCTYIARGNVALSVLMTTATTIGAIVMTPFLCQKFLGTVVPVD---ALGIVISTLQVVLGPIIFGMGANVIAP--KVVKKFTPVLPLIGVSS---TCLLVAS 155
                  57799******************************.*********************************************************************...***************************..66666666666555554...4444444 PP

>> PF13593.1  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5  12.4     6e-19   4.1e-15      52     284 ..       5     227 ..       1     251 [. 0.85

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 6e-19
    PF13593.1  52 ellaglrnwrlhllvllisflltplivlalvsllkaalseelliGllvlaalPtTvsssvvmtsqAgGnvalalceavignllGvfltPllvqlllssssvsvdlaevlkklllsvllPlvvGqllrklfpklvkrlkkllkkvdslvlllivyssfstafaqgaftsvshiillvifavgllLllvvlvillllarllklskedeiavlfcgsaKslalgvplasvlfgsnp 284
                  ++++ +++    l+++l+++ ++p+++l l + ++  l+++l++Gl+++ ++    +s+   t +A+Gnval+++ +++  + ++++tP+l+q +l ++ v vd+  ++ + l  vl P+++G+ ++ + pk+vk+++ +l  ++ ++  l+v ss+      +++  ++  +l++ +  ++lL++++ +  +++ar l++ ++  +++ + +s Ks a+g  la++  g++ 
  MMETSP0890-20130614|39722_1   5 DFVRVASRPGSVLVNFLLCYGFMPMLGLILGKTFQ--LEPALVAGLVLVGSINGGQASN-LCTYIARGNVALSVLMTTATTIGAIVMTPFLCQKFL-GTVVPVDALGIVISTLQVVLGPIIFGMGANVIAPKVVKKFTPVLPLIGVSSTCLLVASSVG-----QVAGPIKAAGLALQI-PVFLLHFLGGICGYWIARFLGFGETTCRTMAIETSMKSSAFGFLLAKLHMGAEA 227
                  556666667778999*****************995..7**************9988777.57**********************************.899*************************************999666666666666665554.....456777887777666.5566999998888*********************************99988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       478  (0.034962); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.35s 00:00:00.91 Elapsed: 00:00:00.69
# Mc/sec: 916.87
//
Query:       MMETSP0890-20130614|39723_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-29  100.7   0.2    1.2e-28   99.0   0.1    1.8  1  PF03912.9 Psb28 protein
  ------ inclusion threshold ------
       0.12   11.8   0.1         13    5.2   0.0    2.2  2  PF08534.5 Redoxin


Domain annotation for each model (and alignments):
>> PF03912.9  Psb28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.1   1.8e-32   1.2e-28       1     108 []      60     177 ..      60     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 1.8e-32
                  EES----------EEEE-------..........---EEEEEES-GGGTSS-GG..G----EEE-----EE---EE-EE----EEEEEEEE---SSHHHHHHHHHHHH---------- CS
    PF03912.9   1 iqfikGidEevvpevrltrsrdgs..........kgtalftfekpkalekessekkeitglyliDeEGelstrevkakfvngklkaveatyelkseeeweRfmRFmerYaeanglgys 108
                  i+fi+GidE++vp v++trs +++          +gta+f fek +al++  ++ k itg++liDeEG++st +++a+f  g++ ++ a+ +l++++ew RfmRFm+r+++++gl+++
  MMETSP0890-20130614|39723_1  60 IEFIRGIDERIVPIVSVTRSVNSHknaqqneiffTGTATFWFEKASALNEDLTQDKLITGMFLIDEEGTISTDDIHARFERGRPIGISAVLVLSNPTEWHRFMRFMKRFSQKHGLAFK 177
                  89*****************987762233333444589****************99************************************************************995 PP

>> PF08534.5  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0019        13      93     130 ..      97     132 ..      64     142 .. 0.71
   2 ?    4.5   0.0    0.0031        21      65     111 ..     148     200 ..     141     209 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0019
                  ----HHHHHT..-EE------EE--EEEEEE---EEEE CS
    PF08534.5  93 esasfakalglrltedasagirtpryavidedgkvvyl 130
                  ++  f ka    l ed+++  ++  +++ide+g ++  
  MMETSP0890-20130614|39723_1  97 ATFWFEKASA--LNEDLTQDKLITGMFLIDEEGTISTD 132
                  4445666666..678888889************99865 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0031
                  EEEEE-SS-HH......HHHHHHHTT.TSEEE------HHHHHT..-EE---- CS
    PF08534.5  65 vvavvaqndaf......vkeawakeglkipvlsDesasfakalglrltedasa 111
                   v v ++  +       +k++ +k+gl+++++sD +  +   +++ ++ d+ +
  MMETSP0890-20130614|39723_1 148 AVLVLSNPTEWhrfmrfMKRFSQKHGLAFKLASDDTPITNSYYNNVVQHDNNS 200
                  455555555557734446666666**********9988888888777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       511  (0.0373757); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 678.49
//
Query:       MMETSP0890-20130614|39729_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       300  (0.0219427); expected 273.4 (0.02)
Passed bias filter:                      292  (0.0213575); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.96
# Mc/sec: 159.76
//
Query:       MMETSP0890-20130614|39732_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       164  (0.0119953); expected 273.4 (0.02)
Passed bias filter:                      158  (0.0115565); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.41s 00:00:00.71 Elapsed: 00:00:01.01
# Mc/sec: 189.81
//
Query:       MMETSP0890-20130614|39736_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-70  237.5   2.5    7.7e-60  202.8   0.2    2.0  2  PF00728.17 Glycosyl hydrolase family 20, catalytic domain


Domain annotation for each model (and alignments):
>> PF00728.17  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.8   0.2   5.7e-64   7.7e-60      23     279 ..       2     241 ..       1     244 [. 0.93
   2 !   35.3   0.1   4.8e-13   6.5e-09     312     349 ..     245     281 ..     240     282 .. 0.94

  Alignments for each domain:
  == domain 1    score: 202.8 bits;  conditional E-value: 5.7e-64
                  HHHHHHTTT--EEEEE--------B--TTSTHHHH-----------B-HHHHHHHHHHHHHTT-EEEEE-------HHHHHH-GGGS--..----------------..--TT-CHHHHHHHHH--.-TGGG----EEE------.....TTS-..HHHHHH............HHHHHHHHHHH---E..EE--GGG-----....---.---EE---TTHHHHHHHHHH-----EE--TTTS-TTS-SS.TT------ CS
   PF00728.17  23 lidamalyKlNvlhlhltDdqgwrleikkypeltevgayresdggfYtkedireiveyAaargIeVipEidmPGHaraalkaypelskkadpedqsvelsvqvgvdegtlnpaneetytfldkvld.EvaelfpseyiHiGgDEvkkkqwkkspkiqafikqeglksleelqsyfikrvekivkkrgkk..ligWeeilekkeaaklakeevtvqsWrnveqeeqaeklankgykvilspadalYldlgqekrpeeegle 279
                  +id ma++KlNvlh+hlt+dq++ + + ++pel+  g+ + ++   Y++ di++iv+yA+ rgI+VipE+dmPGH++++ +++pe   +               +++g ++pa+++t++ ++ +++ +   lfp+ ++H+G DEv++++w++s  +  f++ ++l+s ++l+ yf++ v +i  + +kk  +i+W+e +++++    +++++++q+W++    +  ++++++g++vi+sp++a+Yld+ ++++++ ++l+
  MMETSP0890-20130614|39736_1   2 MIDSMAYVKLNVLHWHLTEDQSFSMPSWQFPELSLNGSFSAKE--RYSHYDIKDIVQYAKLRGIRVIPEFDMPGHTSSWRNSHPEIFAT----------GCLDPDSRGAFDPAKNQTFELISALFHhDWFYLFPDAWLHLGSDEVPTTCWNNSIDLA-FMELHNLSSFNNLFAYFVNSVVDIALQDNKKqhIILWDEAFTSGS---PDPNKTIIQIWHD----DVTNSVLDAGFQVIYSPSSAWYLDHLDTNWTDRYTLN 241
                  79***************************************98..*****************************************985..........3334456789***************95489**********************998776.************************999888889**********97...89999*******8....56999***********************999988765 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 4.8e-13
                  .----EEEE--TT--SHHHHHHHHTTT----------- CS
   PF00728.17 312 nvlGgeaalWgEnikdeenleyrlfprllalAeraWsk 349
                   vlGgea+ WgE++ d++++e +++p l+a+Aer+Ws+
  MMETSP0890-20130614|39736_1 245 SVLGGEACAWGETM-DPSDIEATVWPSLAAVAERLWSP 281
                  79************.9********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.88
# Mc/sec: 898.63
//
Query:       MMETSP0890-20130614|39740_1  [L=979]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       715  (0.0522967); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:01.08
# Mc/sec: 2172.25
//
Query:       MMETSP0890-20130614|39744_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       157  (0.0114833); expected 273.4 (0.02)
Passed bias filter:                      152  (0.0111176); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.74
# Mc/sec: 200.78
//
Query:       MMETSP0890-20130614|39751_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.80
# Mc/sec: 170.74
//
Query:       MMETSP0890-20130614|39752_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 248.35
//
Query:       MMETSP0890-20130614|39757_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 332.13
//
Query:       MMETSP0890-20130614|39763_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-36  126.5   3.0    1.1e-35  123.1   2.1    1.9  1  PF10036.4 Putative carnitine deficiency-associated protein


Domain annotation for each model (and alignments):
>> PF10036.4  Putative carnitine deficiency-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   2.1   8.4e-40   1.1e-35      19     249 .]       4     210 .]       1     210 [] 0.77

  Alignments for each domain:
  == domain 1    score: 123.1 bits;  conditional E-value: 8.4e-40
    PF10036.4  19 lddekefrslilwlEdqkirlykiedreklrnvksadweealekYlkdleiPidlkerqevldwLlslAvrleykdnayddlskaekleeeekketklekkstnpldnldfnsaefeegvrklAkklgieahp..delvllk.aalkvikeklkkeakkentlekkgkplledklfglgfdvkdaeleeaarIlRLLhieqLRelqtkinevlvavQnlTadPktDtklgkvGr 249
                   +d++ ++ +i+wlEd kir  +ie+r  lr++  + w ea+e Yl+dl++P   ++ +  +  +l+ Av++ y+d + d+ + ++++   ++++++             +++a       +lA++l +   +  d+l+ +  aa++v+  k +++a+++         + e+ + +lgf + +++ ++ a+IlRL ++ +LR+lq++in++lv  Q  +a+P+t+t+lgkvGr
  MMETSP0890-20130614|39763_1   4 VKDDQSIAMMISWLEDRKIRIWEIEERIPLRTAGPQ-WIEAFERYLNDLDCP--HQDMERRVGFVLQQAVACAYEDGE-DAFKADAEAWLMSQQQAR-------------IQEA----EINQLATLLDLHNLStdDALLRICaAAAHVADAKDNTTARTRH------SFFQENPQLSLGFTTNNQDTDNIAKILRLFYLADLRNLQNNINAILVRAQHFVANPRTNTSLGKVGR 210
                  6789999***********************999998.***************..599999******************.333333333333333333.............3333....3457777777777552244444430333443333333333333......456677779*********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       628  (0.0459333); expected 273.4 (0.02)
Passed bias filter:                      468  (0.0342305); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 708.78
//
Query:       MMETSP0890-20130614|39773_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       585  (0.0427882); expected 273.4 (0.02)
Passed bias filter:                      326  (0.0238444); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.39s 00:00:01.12 Elapsed: 00:00:01.25
# Mc/sec: 784.09
//
Query:       MMETSP0890-20130614|39777_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      267  (0.019529); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 656.00
//
Query:       MMETSP0890-20130614|39768_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     1e-125  420.2   0.0   1.4e-125  419.8   0.0    1.1  1  PF01432.15 Peptidase family M3


Domain annotation for each model (and alignments):
>> PF01432.15  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.8   0.0    1e-129  1.4e-125      30     457 ..     262     699 ..     256     700 .. 0.94

  Alignments for each domain:
  == domain 1    score: 419.8 bits;  conditional E-value: 1e-129
                  --HHHHHHHHHHHHHHHHH----SHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----.---GGGHHHHHHHHHHHHHS--GGGTGGG-BHHHHHH--HHHHHHH---EEEEESSS..--SSTT--EEEEE...--....--.....--E.EEEE---B--TT.-----B----B--BT-.....-EEE-B--B---------B--HHHHHHHHHH------------SSGGG---.-S-HHHHHHHHHHHHHGGGSHHHHHHH-B-S----B--HHHHHHHHHTTTTT---HHHHHHHHHHHHHHHTT--GGG----..HHHHHHHHHHTT--BTTB--SS-GGG-TTT---------HHHHHHHHHHH---HHHHH-----....S----HHHHHTTT----S-HHHHHHHH------SHHHHHH-- CS
   PF01432.15  30 ensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkkelglegelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVv...de...ils.....egligeiylDlyerkg.KrggAasfglvksredgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgt.nvpidfvElpSqlmEnlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqasFghlfahgYaanYYsylyaevlaldifekffeedpln....retGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                  +n+++++e+l lr+e+A+llg++++ae +l++kma + ++v+++ + l +k++p+++ke+++l  +++++     +l++wD++Y+sek re+ + +++e++++y+ l+tvl+G+++l+++LfGi++ +++++  +vw +dVr+++V+   de   + +     +++i+++ylD+y+r++ KrggA++ +++ +++   r++pv+yl++N ++ps +kPsL+t+ evetLfHE+GH+++++l++ +  + +g+ nv++d+vElpSq+mEn+l ++ +l++l++hyetge++p++l+ek+ +akn+  ++ ++rql f+ +d+el+ +++++  + k+  ++ +++  ++l++p  p++++ a F+h+fa+gY+a+YYsy++aevl++d f +f+e +  +    ++tG+r+r+++L+ Ggs  p++++++f+gr+ps++all++ g
  MMETSP0890-20130614|39768_1 262 KNEPIIKEILTLRQEQAQLLGKKNHAEVSLAMKMAGSVDKVDELTNLLAAKAIPAAKKEMEELITFAQQDA----QLKHWDIPYFSEKLREQTFGFSEEDIRPYMALDTVLDGMFDLLHRLFGIRVIRADGE-AQVWNNDVRFFKVFvadDEpltN-NnfappGTHIASFYLDPYARPEnKRGGAWMDTCIGKSRARGREIPVAYLTCNSSPPSDGKPSLMTFGEVETLFHETGHGLQHMLTQVDLGDAAGIsNVEWDAVELPSQFMENFLYHKPTLDKLARHYETGEPLPNDLFEKIKAAKNFHSGMIMCRQLAFSSLDMELYARYDPTSSE-KSPFDIQTQIFTQYLPMPPLPEDRFLAAFSHIFAGGYSAGYYSYKWAEVLSADSFAAFEEAGLDDpdavAATGRRFRDTVLALGGSVHPAQVFRAFRGRDPSPEALLRHSG 699
                  689**************************************************************988777....799*************************************************99999.9***********99554336531.2222336899**********755************987889***********************************************************************************************************************************9965.589*********************************************************88444899999*************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:01.38
# Mc/sec: 1229.44
//
Query:       MMETSP0890-20130614|39780_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 447.32
//
Query:       MMETSP0890-20130614|39783_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.8   0.8      0.034   14.1   0.5    1.5  1  PF04145.10 Ctr copper transporter family
      0.055   12.2   0.1       0.07   11.9   0.0    1.1  1  PF12725.2  Protein of unknown function (DUF3810)
        0.8    8.3   3.0       0.98    8.0   2.1    1.1  1  PF01080.12 Presenilin


Domain annotation for each model (and alignments):
>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   7.4e-06     0.034      29      95 ..      18      85 ..      13     142 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.4e-06
   PF04145.10 29 gsciaifllavlyegLkavrrklerklakrasrnskavksasrsaeaekskaeksak.......strattvplr 95
                  +c+++++l+++y g +++ + ++++ ++++++ +++ ++++ +  + ++++  +++       +      +++
  MMETSP0890-20130614|39783_1 18 TICLLLMFLVAIYNGASYYIEIFSQRYNQKFEKLNNEDTTENDTDLSPRASSLRKSQqdnksttN------SSN 85
                 58*************99999999999998887766666666666555544433222233333331......222 PP

>> PF12725.2  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.07      61     131 ..      17      87 ..       4     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
    PF12725.2  61 lallsvlyflFtllwGlNYsrkplseklgleeeeyseeelkelaeelieklnelrkkleedesgkvklkls 131
                   +++++l+fl  +  G  Y+ + +s++ + + e++++e+ +e   +l  ++ +lrk+ ++++s++ + +ls
  MMETSP0890-20130614|39783_1  17 HTICLLLMFLVAIYNGASYYIEIFSQRYNQKFEKLNNEDTTENDTDLSPRASSLRKSQQDNKSTTNSSNLS 87 
                  45677899999999****************************************99999877755554433 PP

>> PF01080.12  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.1   0.00021      0.98     214     305 ..      25     110 ..      22     144 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00021
   PF01080.12 214 fpaliysstvvvltvgsnqeetsegeesterrtskstraaispdsvaassstlelkekssteeesddesdssetesqedsslaeeevakevd 305
                  f + iy+ ++++ ++ s++ ++ + e+ ++ +t++ + + +sp + + ++s+++ k + + ++    +++ + ++s +d+ + ++ +++e  
  MMETSP0890-20130614|39783_1  25 FLVAIYNGASYYIEIFSQRYNQ-KFEKLNNEDTTE-NDTDLSPRASSLRKSQQDNKSTTNSSNL---SNQQQPLSS-SDADKEPPSSQHEHC 110
                  5667999999999999555444.666666666666.6788899988888877733332222222...222222222.344444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1373  (0.100424); expected 273.4 (0.02)
Passed bias filter:                      689  (0.050395); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.43s 00:00:00.95 Elapsed: 00:00:01.03
# Mc/sec: 381.56
//
Query:       MMETSP0890-20130614|39782_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-18   64.0   6.9    4.3e-11   42.7   0.5    2.2  2  PF09834.4  Predicted membrane protein (DUF2061)
  ------ inclusion threshold ------
      0.027   14.2   0.1      0.062   13.1   0.1    1.6  1  PF04241.10 Protein of unknown function (DUF423)
      0.084   12.4   0.0       0.25   10.9   0.0    1.8  2  PF01012.16 Electron transfer flavoprotein domain
      0.095   13.0   0.2       0.16   12.3   0.1    1.3  1  PF14357.1  Domain of unknown function (DUF4404)
       0.21   10.8   4.2       0.37   10.0   0.1    2.7  3  PF04799.8  fzo-like conserved region
       0.93    9.3   3.2        1.6    8.6   2.2    1.3  1  PF11221.3  Subunit 21 of Mediator complex


Domain annotation for each model (and alignments):
>> PF09834.4  Predicted membrane protein (DUF2061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   6.2e-09   1.4e-05       2      51 ..      78     127 ..      77     129 .. 0.94
   2 !   42.7   0.5   1.9e-14   4.3e-11       1      53 []     145     197 ..     145     197 .. 0.98

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 6.2e-09
    PF09834.4   2 lKtiswrilhttvaflVayllTgslalagaialvEplvktvlYyfHERvW 51 
                  +K+i wri++ +++f  ++ +T +l +a+ai + +++ k+   ++ ER+ 
  MMETSP0890-20130614|39782_1  78 VKAIGWRIIAGLITFCSSFYFTKQLSTALAIVASDFFSKVLTMFIGERIF 127
                  8***************************************9999999985 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 1.9e-14
    PF09834.4   1 llKtiswrilhttvaflVayllTgslalagaialvEplvktvlYyfHERvWer 53 
                  ++K++ wr+++++ + +++ l+ gs+ ++++ia  +++ kt+l + ++ +W++
  MMETSP0890-20130614|39782_1 145 VAKALIWRLIAFLNTATISGLVAGSAGIGASIASFDAIFKTALMVGYDQMWNK 197
                  58*************************************************96 PP

>> PF04241.10  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.7e-05     0.062      39      73 ..      66     100 ..      54     116 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.7e-05
   PF04241.10  39 lallakrlasrllklagalflaGillFsGslyala 73 
                   +++ +++a++ +k++g+ ++aG++ F+ s y   
  MMETSP0890-20130614|39782_1  66 GPIYRDTTARSFVKAIGWRIIAGLITFCSSFYFTK 100
                  556666678999********************865 PP

>> PF01012.16  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.95   2.2e+03      98     123 ..      70      95 ..      44     106 .. 0.60
   2 ?   10.9   0.0   0.00011      0.25      74     127 ..     110     163 ..     101     170 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.95
                  SSTTTT--HHHHHHHHT--EEEEEEE CS
   PF01012.16  98 atstgkdlaprlAalLgtplitdvte 123
                  + +t + +   ++ +  ++lit +++
  MMETSP0890-20130614|39782_1  70 RDTTARSFVKAIGWRIIAGLITFCSS 95 
                  34445556666777777777777765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00011
                  -CCCHHHHHHHHHHHH.-SEEEEESSTTTT--HHHHHHHHT--EEEEEEEEEE- CS
   PF01012.16  74 dpeatakalaalikkekpdlvllgatstgkdlaprlAalLgtplitdvteleae 127
                    +  +k+l+ +i ++ ++ v +g++++g++++  +A++L + li+   + ++ 
  MMETSP0890-20130614|39782_1 110 ASDFFSKVLTMFIGERIFNKVNVGRSASGDNVGRSVAKALIWRLIAFLNTATIS 163
                  56678899999999999****************************998877665 PP

>> PF14357.1  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.8e-05      0.16       5      36 ..      29      60 ..      27      69 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.8e-05
    PF14357.1  5 lLekLheeLeqtdsldeetraeLkelrddiee 36
                 ++++L++eL++  sl  e+r+eLk+l +++e+
  MMETSP0890-20130614|39782_1 29 QIRRLETELKEARSLLREERKELKQLAKQVEK 60
                 6899**************************97 PP

>> PF04799.8  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.14   3.3e+02     112     139 ..      31      58 ..       2      62 .. 0.52
   2 ?   10.0   0.1   0.00016      0.37      41      66 ..      78     103 ..      73     107 .. 0.89
   3 ?   -0.3   0.0      0.24   5.4e+02      37      52 ..     142     157 ..     133     166 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.14
    PF04799.8 112 arleqqvdvtkkdleeeikelekeiekl 139
                   rle + +++++ l ee kel++  +++
  MMETSP0890-20130614|39782_1  31 RRLETELKEARSLLREERKELKQLAKQV 58 
                  3445555555555554444444443333 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00016
    PF04799.8  41 lktvgWrlialllglyGslYlyErls 66 
                  +k++gWr+ia+l+++  s+Y   +ls
  MMETSP0890-20130614|39782_1  78 VKAIGWRIIAGLITFCSSFYFTKQLS 103
                  79******************988775 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.24
    PF04799.8  37 ggvvlktvgWrliall 52 
                  g  v k++ Wrlia l
  MMETSP0890-20130614|39782_1 142 GRSVAKALIWRLIAFL 157
                  5568899999999875 PP

>> PF11221.3  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.2   0.00069       1.6     105     136 ..      29      60 ..      24      63 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00069
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF11221.3 105 rikeLeeelreveeereeavrekeellkkvee 136
                  +i++Le el+e+   ++e ++e+++l k+ve+
  MMETSP0890-20130614|39782_1  29 QIRRLETELKEARSLLREERKELKQLAKQVEK 60 
                  8*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1064  (0.0778233); expected 273.4 (0.02)
Passed bias filter:                      831  (0.0607812); expected 273.4 (0.02)
Passed Vit filter:                       124  (0.00906963); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.77
# Mc/sec: 659.78
//
Query:       MMETSP0890-20130614|39791_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   27.0   0.0      1e-05   24.5   0.0    2.3  2  PF10516.4  SHNi-TPR
    2.9e-06   26.9   4.8     0.0058   16.4   0.0    3.5  3  PF13424.1  Tetratricopeptide repeat
    1.5e-05   24.4   1.9      0.073   12.6   0.0    3.4  3  PF13414.1  TPR repeat
    0.00025   20.4   2.6     0.0069   15.8   0.1    2.9  2  PF00515.23 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   14.9   4.9       0.24   11.1   0.0    3.6  3  PF13181.1  Tetratricopeptide repeat
      0.038   13.7   6.8       0.19   11.6   0.0    4.1  4  PF07719.12 Tetratricopeptide repeat
        2.3    8.1  11.9       0.22   11.4   4.8    1.8  2  PF05103.8  DivIVA protein


Domain annotation for each model (and alignments):
>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.51     1e+03       8      14 ..      55      61 ..      55      63 .. 0.89
   2 !   24.5   0.0   5.4e-09     1e-05       1      37 [.     148     184 ..     148     185 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.51
    PF10516.4  8 GEiSlEn 14
                 GE+SlE+
  MMETSP0890-20130614|39791_1 55 GEMSLEC 61
                 9****96 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 5.4e-09
    PF10516.4   1 AdvydlLGEiSlEnEnFpqAveDlrkaLeLreqllpp 37 
                  A+ y +LG++   n+nF  Av+D++++L+ r +llp 
  MMETSP0890-20130614|39791_1 148 AKAYCRLGDLKKVNGNFGSAVHDYEACLQMRIKLLPV 184
                  677999*****************************95 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00054       1.1      17      59 ..      32      75 ..      21      81 .. 0.86
   2 !   16.4   0.0     3e-06    0.0058       2      59 ..     145     203 ..     144     208 .. 0.92
   3 ?    1.3   0.2      0.15   2.9e+02      23      37 ..     218     232 ..     216     270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00054
    PF13424.1 17 rlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylal 59
                 + g  d+A++   + le    ++g+ ++++a +++ +++++l++
  MMETSP0890-20130614|39791_1 32 KSGPIDKAIDAWATLLENgVNQYGEMSLECAQLYYRYGDALLRK 75
                 556679*********************************99875 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 3e-06
    PF13424.1   2 pdlatilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylal 59 
                   ++a+++++l+++ +  g++ +A   ye +l++ +++l+ ++ ++a+a   la+++  +
  MMETSP0890-20130614|39791_1 145 LEVAKAYCRLGDLKKVNGNFGSAVHDYEACLQMrIKLLPVTDRRIADAHWCLATALDFH 203
                  5799***********************************9*************998765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.15
    PF13424.1  23 eAlelyekalellre 37 
                  +Ale+y+k+ + l+e
  MMETSP0890-20130614|39791_1 218 KALEHYQKCANSLSE 232
                  788888888887543 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0011       2.1      11      56 ..      28      81 ..      23      85 .. 0.73
   2 !   12.6   0.0   3.7e-05     0.073      36      67 ..     147     177 ..     141     179 .. 0.91
   3 ?    1.0   0.0      0.15   2.9e+02      21      30 ..     218     227 ..     216     239 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0011
    PF13414.1 11 nalfkegdydeAieayekAlel........dpnnaelyynlAlaylklgkdyee 56
                 ++  k g  d+Ai+a+   le         + ++a+lyy+ + a+l++ ++ +e
  MMETSP0890-20130614|39791_1 28 EMITKSGPIDKAIDAWATLLENgvnqygemSLECAQLYYRYGDALLRKSEESDE 81
                 555667778999999999998533222322688999**********99877666 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 3.7e-05
    PF13414.1  36 naelyynlAlaylklgkdyeeAledyekAlel 67 
                   a++y++l+ +   +g ++ +A++dye +l+ 
  MMETSP0890-20130614|39791_1 147 VAKAYCRLGDLKKVNG-NFGSAVHDYEACLQM 177
                  589*************.7************95 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.15
    PF13414.1  21 eAieayekAl 30 
                  +A+e+y+k+ 
  MMETSP0890-20130614|39791_1 218 KALEHYQKCA 227
                  5666666664 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.6e-06    0.0069       1      30 [.     148     177 ..     148     178 .. 0.96
   2 ?    3.6   0.2     0.025        48      19      27 ..     218     226 ..     216     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.6e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALel 30 
                  aka+++lG +   +g++  A+ +ye +L+ 
  MMETSP0890-20130614|39791_1 148 AKAYCRLGDLKKVNGNFGSAVHDYEACLQM 177
                  89*************************986 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.025
                  HHHHHHHHH CS
   PF00515.23  19 eAleyyekA 27 
                  +Ale+y+k+
  MMETSP0890-20130614|39791_1 218 KALEHYQKC 226
                  9******97 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.2     4e+02       1      14 [.      62      75 ..      62      79 .. 0.84
   2 ?   11.1   0.0   0.00012      0.24       1      30 [.     148     177 ..     148     178 .. 0.95
   3 ?    2.2   0.1     0.083   1.6e+02      18      27 ..     217     226 ..     216     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.2
                 ---TTT---HHHHT CS
    PF13181.1  1 akayynlGdiYrql 14
                 a++yy+ Gd+++ +
  MMETSP0890-20130614|39791_1 62 AQLYYRYGDALLRK 75
                 579******98765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00012
                  ---TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalel 30 
                  akay++lGd+ + +G++ +A   +e +l++
  MMETSP0890-20130614|39791_1 148 AKAYCRLGDLKKVNGNFGSAVHDYEACLQM 177
                  689*************************97 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.083
                  HHHHHHHH-- CS
    PF13181.1  18 dkAkeyleka 27 
                  +kA+e+++k+
  MMETSP0890-20130614|39791_1 217 SKALEHYQKC 226
                  79*******9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   6.2e+03      18      29 ..      37      48 ..      36      48 .. 0.81
   2 ?    0.7   0.1      0.28   5.5e+02       1      13 [.      62      74 ..      62      77 .. 0.84
   3 ?   11.6   0.0   9.6e-05      0.19       1      29 [.     148     176 ..     148     179 .. 0.95
   4 ?    2.0   0.1      0.12   2.2e+02      19      27 ..     218     226 ..     216     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHH CS
   PF07719.12 18 eeAleafekAle 29
                 ++A++a+   le
  MMETSP0890-20130614|39791_1 37 DKAIDAWATLLE 48
                 899999988775 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHH CS
   PF07719.12  1 aealynlGlayyk 13
                 a+++y+ G+a+++
  MMETSP0890-20130614|39791_1 62 AQLYYRYGDALLR 74
                 6789****99987 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 9.6e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAle 29 
                  a+a+++lG++   +g++  A++++e +l+
  MMETSP0890-20130614|39791_1 148 AKAYCRLGDLKKVNGNFGSAVHDYEACLQ 176
                  79*************************98 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.12
                  HHHHHHHHH CS
   PF07719.12  19 eAleafekA 27 
                  +Ale+++k+
  MMETSP0890-20130614|39791_1 218 KALEHYQKC 226
                  8******97 PP

>> PF05103.8  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.8   3.5e+03      97      97 ..     119     119 ..      97     162 .. 0.55
   2 ?   11.4   4.8   0.00011      0.22      32     108 ..     221     297 ..     217     315 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.8
    PF05103.8  97 k 97 
                  +
  MMETSP0890-20130614|39791_1 119 R 119
                  1 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00011
    PF05103.8  32 kdyeallkeneelkeeieeleekleeykeleeslkkslvvaqetaeevkanakke.aeliikeaekkaekiveeaeee 108
                  + y++ ++  +e  +++++++ + +e++++ ++lk+++ +aq+++++ ++++ +  a l+ ++a++ a++  ++a+  
  MMETSP0890-20130614|39791_1 221 EHYQKCANSLSERAQNLDTADPEWKELDSILQELKETISAAQDIQQQARQKQLNDyAALLAAKAKNHAST-TDTAKTC 297
                  6788888888888999999999**************************9988665156666666666654.4555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1305  (0.0954506); expected 273.4 (0.02)
Passed bias filter:                      508  (0.0371562); expected 273.4 (0.02)
Passed Vit filter:                        69  (0.00504681); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.40s 00:00:01.14 Elapsed: 00:00:01.35
# Mc/sec: 615.95
//
Query:       MMETSP0890-20130614|39798_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.59
# Mc/sec: 511.76
//
Query:       MMETSP0890-20130614|39803_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-78  261.5   0.0    9.7e-78  261.2   0.0    1.0  1  PF01937.14 Protein of unknown function DUF89


Domain annotation for each model (and alignments):
>> PF01937.14  Protein of unknown function DUF89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2   0.0   7.1e-82   9.7e-78      34     345 ..      51     379 ..      25     384 .. 0.93

  Alignments for each domain:
  == domain 1    score: 261.2 bits;  conditional E-value: 7.1e-82
                  HHHHHHHHHHHTTC-----HHHH..............T-B----BHHHHHHHHHHHHHHHHHHSTTTT--TTCHHHHHHHHCCHCCHHHHHHHHHCHHHHHHHHHHHHHHHH------HHHHTSHHHHHS--.HHHCCHCHHTTECCE-HHHHHHHH...CTT---EEEEE--B---CCCHHHHHHHHHHH----SEEEEEEBSS--TTTB-BHHHHHHHHHHHH-TTTSHHHHH---HHHHHCTEEEEEEE-G..GGCSS--CCCC-HHHHHHHC.T-SEEEE---HHHHHH-BSTT--TTSEHHHH-TT----EEEEEE--SCHHHHH--- CS
   PF01937.14  34 elselkaelqtdkpltplteeee..............krswfnapwlfaecylyrrlleafglsewkeyDpFkevKeesnesalkaveelaerleeledekelfkellkislwGNaiDlgllateediqkdq.eeelrkaleknilvddldklwekl...kkkkakrvdivlDNaGfElvlDllLaeeLlrsglatkVvlhvkaiPwfvsDvtleDaewlleqladsedfelsalgagldellkegklvlsgsd..fwtpgldyselspelyeelk.kadLvifKGdlNyrkLtgdrkwppttpfktalgfspvpvlaLrtvKadvvaglleg 345
                  +l+el++e++  +pl++l e++               +++w++apwl+ae+y+yrr+  a+   + ++ D+F++ K   + s+l+ +e++ +r++  +d+      +l i+lwGN++Dl+l+  + +i       ++ ++ + ++l+d++++++ ++   k k++ ++d+v+DNaGfEl+ DllLa+++l++++a++V+l  k +P+fvsD++ +D+++ ++ l + ++ +l++ g++++e+l++g+l+ls+ +   wt++++++e++++l+++l  ++dL+i+KGd+Nyr+ +gd  wp + pf+++++++p+pvl+Lrt+Ka++ +g +++
  MMETSP0890-20130614|39803_1  51 ALKELREEIKCAAPLKQLSEDGGpdvaawnellsqyqGETWLSAPWLVAEFYFYRRIAAATD-WFGQNRDFFARAKSTGLVSSLQSLEQVFSRVDVRNDP---TISFLFIALWGNRMDLSLWPADSNIAARGeFDQVLQQGQAQLLCDHSQQVLTCIdkiKIKPKATIDLVVDNAGFELCSDLLLADHFLSAEIADTVRLRLKHHPTFVSDALDTDVRHHIAVLSKANHRALKETGKRWSEYLDSGQLILSPRSesYWTLPYPFWEMPSHLRSQLGnTCDLIIIKGDANYRRALGDSPWPLDAPFSQVVSYFPCPVLCLRTLKAELGCGMSPD 379
                  57889999999999999988888999999999****************************99.4479*********************************...999*****************555554444499********************************************************************************************************************97667*******************9799***********************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      283  (0.0206992); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:01.07
# Mc/sec: 889.12
//
Query:       MMETSP0890-20130614|39816_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00016   21.3   1.4       0.31   10.7   0.0    2.6  2  PF08274.7  PhnA Zinc-Ribbon
     0.0037   16.8   8.0     0.0069   15.9   5.5    1.5  1  PF13639.1  Ring finger domain
      0.004   16.6   7.0     0.0068   15.9   4.9    1.4  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.017   14.8   8.7      0.035   13.8   6.0    1.6  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
      0.074   13.2   3.3        0.4   10.8   0.1    2.4  2  PF08232.7  Striatin family
      0.088   12.8   3.4       0.43   10.6   0.0    2.6  3  PF14389.1  Leucine-zipper of ternary complex factor MIP1
       0.12   11.9   0.3       0.94    9.0   0.0    2.3  2  PF00578.16 AhpC/TSA family
        4.8    6.9   7.7         13    5.5   5.4    1.9  1  PF12773.2  Double zinc ribbon
        5.5    6.8  10.1         11    5.9   5.5    2.4  2  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF08274.7  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0002      0.31       6      21 ..     121     136 ..     121     136 .. 0.96
   2 !    8.6   0.3    0.0009       1.4      21      30 .]     178     187 ..     174     187 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0002
    PF08274.7   6 plCaSeytYedgallv 21 
                  ++C+Se+ Y d+++lv
  MMETSP0890-20130614|39816_1 121 EQCSSETKYIDRDILV 136
                  89************98 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0009
    PF08274.7  21 vCpeCahEwe 30 
                  vCpeC +E++
  MMETSP0890-20130614|39816_1 178 VCPECFSEIS 187
                  9*******97 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   5.5   4.5e-06    0.0069       2      43 ..     141     182 ..     140     185 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.5e-06
    PF13639.1   2 eCaiCldelsegeevvrlp.CgHvfHeeCldewlrssnsCPlC 43 
                  +C +C+++l+  +++ rl+ Cg v +  C++ + ++ + CP C
  MMETSP0890-20130614|39816_1 141 TCIVCYEKLK-FDSPSRLRcCGAVVCIACVAGLESEGTVCPEC 182
                  7********6.6899999989********************99 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.9   4.5e-06    0.0068       4      48 ..     141     187 ..     138     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.5e-06
    PF13920.1   4 tCvvCler..eadvlllpCgHlclCeeCaerllkrkkkCpiCrspie 48 
                  tC+vC+e+  + +   l+C  +++C +C+  l ++   Cp C s+i+
  MMETSP0890-20130614|39816_1 141 TCIVCYEKlkFDSPSRLRCCGAVVCIACVAGLESEGTVCPECFSEIS 187
                  8******7446789999999999*******************99986 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.0   2.3e-05     0.035       3      44 ..     140     182 ..     138     184 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.3e-05
    PF13923.1   3 fsCpiCleelen..pviltpCgHlyCkkCieqwlekskkkCPiC 44 
                   +C +C+e+l+   p  l +Cg ++C  C+  + ++    CP C
  MMETSP0890-20130614|39816_1 140 PTCIVCYEKLKFdsPSRLRCCGAVVCIACVAGLESE-GTVCPEC 182
                  58******98544588999************99998.999**99 PP

>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.084   1.3e+02      45     102 ..      18      74 ..       3      79 .. 0.37
   2 ?   10.8   0.1   0.00027       0.4      36      81 ..      84     192 ..      82     238 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.084
    PF08232.7  45 enlkedLkrrvkmLekalkqeraklkslkagveseskqeskssaeeeeleekkdeese 102
                  ++ + +L    +m e + +++  ++  l+  ++ +++++s+s++ +++l e++d+es+
  MMETSP0890-20130614|39816_1  18 KEAEAKLDYLSSMTE-NRRKRGVRFSGLNVDSSDDHASSSASDDASQQLIEEDDDEST 74 
                  222222222222222.222233333333333222224444444444444444444444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00027
    PF08232.7  36 kLeGerrglenlkedLkrrvkmLekalkqeraklkslkagveses...............................................................k 81 
                   Le++++  ++ +e+L + ++ Le al++e++   ++++ +++ +                                                               +
  MMETSP0890-20130614|39816_1  84 SLENHAKAIQRKNESLYEDITGLESALERETKSRLAAEQCSSETKyidrdilvpvyptcivcyeklkfdspsrlrccgavvciacvaglesegtvcpecfseisplenE 192
                  69*************************9998876664444444437777777777777777777777777777777777777777777777777777765544433331 PP

>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.11   1.6e+02      20      46 ..       6      32 ..       3      39 .. 0.84
   2 ?   -3.4   0.0       6.4   9.7e+03      48      62 ..      54      68 ..      43      68 .. 0.64
   3 ?   10.6   0.0   0.00028      0.43       4      41 ..      90     127 ..      87     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.11
    PF14389.1 20 LqkqLqdeekvreaLekalgrssssll 46
                 L ++L++e+ +r+  e+ l++ ss++ 
  MMETSP0890-20130614|39816_1  6 LTMELEQERLLRKEAEAKLDYLSSMTE 32
                 7899*********99999999887765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.4
    PF14389.1 48 lpsslpkkakellke 62
                 ++s  ++  ++l++e
  MMETSP0890-20130614|39816_1 54 SSSASDDASQQLIEE 68
                 455566677788876 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00028
    PF14389.1   4 kassekrsaLeqeVkkLqkqLqdeekvreaLekalgrs 41 
                  ka + k ++L ++++ L+  L+ e+k r a e+  +++
  MMETSP0890-20130614|39816_1  90 KAIQRKNESLYEDITGLESALERETKSRLAAEQCSSET 127
                  66678889********************9988876665 PP

>> PF00578.16  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00062      0.94      43      85 ..      22      64 ..      18      97 .. 0.84
   2 ?    0.1   0.0      0.36   5.5e+02      37      57 ..     178     198 ..     175     208 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00062
   PF00578.16 43 telpalaelyeefkkkgvevigvsvdspeshkkfaeknelnfp 85
                 + l +l+ + e+ +k+gv + g++vds ++h++ +++++   +
  MMETSP0890-20130614|39816_1 22 AKLDYLSSMTENRRKRGVRFSGLNVDSSDDHASSSASDDASQQ 64
                 67889999**********************9999888775544 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.36
   PF00578.16  37 fcpvCttelpalaelyeefkk 57 
                   cp C  e++ l++ +ee  +
  MMETSP0890-20130614|39816_1 178 VCPECFSEISPLENENEEVND 198
                  6************99999876 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.4    0.0088        13      14      49 ..     141     182 ..     120     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0088
    PF12773.2  14 fCpqCgaklk..........eataeevlCpsCgesvspkarfCpnC 49 
                   C  C +klk          +a    v+C +C + ++ + ++Cp+C
  MMETSP0890-20130614|39816_1 141 TCIVCYEKLKfdspsrlrccGA----VVCIACVAGLESEGTVCPEC 182
                  6888888888888888654444....45999999999999999988 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.9   1.2e+04      37      42 ..     121     126 ..     112     130 .. 0.63
   2 ?    5.9   5.5    0.0071        11      10      44 ..     140     173 ..     136     201 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 7.9
   PF01363.16  37 skCssk 42 
                  ++Css+
  MMETSP0890-20130614|39816_1 121 EQCSSE 126
                  455554 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0071
   PF01363.16  10 kkCeiCakkFsltrrrhhCrlCGkvvCskCsskrv 44 
                  ++C  C +k ++       r+CG vvC +C+  + 
  MMETSP0890-20130614|39816_1 140 PTCIVCYEKLKF-DSPSRLRCCGAVVCIACVAGLE 173
                  679999999988.77777899******99985443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       858  (0.062756); expected 273.4 (0.02)
Passed bias filter:                      491  (0.0359128); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 724.82
//
Query:       MMETSP0890-20130614|39815_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       366  (0.02677); expected 273.4 (0.02)
Passed bias filter:                      325  (0.0237712); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 574.42
//
Query:       MMETSP0890-20130614|39822_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-09   38.2   1.2    0.00066   19.8   0.0    3.9  2  PF12796.2  Ankyrin repeats (3 copies)
    1.1e-08   34.3   7.0       0.52   10.5   0.1    6.2  6  PF13606.1  Ankyrin repeat
    2.8e-08   33.9   3.2       0.46   10.9   0.0    5.5  5  PF13637.1  Ankyrin repeats (many copies)
    7.7e-05   22.1   8.9        5.1    6.9   0.0    6.1  6  PF00023.25 Ankyrin repeat
  ------ inclusion threshold ------
      0.082   12.3   1.8       0.12   11.7   0.0    2.0  2  PF04281.8  Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   9.1e-05      0.25       1      67 [.       3      84 ..       3     165 .. 0.54
   2 !   19.8   0.0   2.4e-07   0.00066      22      84 ..     261     332 ..     242     335 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.1e-05
    PF12796.2  1 LhlAaengn.............lelvklLlekgadvdlgetpLhlAaeagnl..eivklLleagadvnakd.kegntpLhlAv 67
                 Lh+Aa+n +             ++++++ l ++ ++  ++tpLh A+++  +   i+++L +  ++v+  +   gntpL + +
  MMETSP0890-20130614|39822_1  3 LHYAAQNPQataefilavaqlwPDAIRIALTEKSEFS-RDTPLHTACRSTIVsaSILSALAQLDKEVCLFEdSIGNTPLAVLC 84
                 6666666665555555555555777888888888888.899******986554467777777444443322244444443332 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2.4e-07
    PF12796.2  22 dvdl.getpLhlAaeagnleivklLle......agadvnakdkegntpLhlAvrngh...lelvklLlekgad 84 
                  +++  g tpLh+ ++  +++i  +Lle      +ga v  +++ g+tpLhl  +n++   +  +k L++ g d
  MMETSP0890-20130614|39822_1 261 KLNDaGATPLHYLCR-RHTKIQPALLEtigglgRGATVIKTNQAGHTPLHLLFMNEQnanYANLKALIDLGPD 332
                  34447899****877.5***********************************996661115566777777665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.083   2.3e+02       5      13 ..       2      10 ..       1      29 [. 0.73
   2 !    9.4   0.0   0.00044       1.2       3      21 ..      41      61 ..      39      66 .. 0.81
   3 ?   -1.4   0.0       1.4   3.7e+03       2      11 ..      76      85 ..      76      92 .. 0.75
   4 ?    5.0   0.0     0.012        33       2      18 ..     145     162 ..     144     165 .. 0.75
   5 ?    4.9   0.0     0.013        34       2      12 ..     266     276 ..     265     288 .. 0.77
   6 !   10.5   0.1   0.00019      0.52       2      27 ..     304     332 ..     303     335 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.083
    PF13606.1  5 pLhlAasng 13
                 +Lh+Aa+n 
  MMETSP0890-20130614|39822_1  2 ALHYAAQNP 10
                 7*****984 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00044
    PF13606.1  3 nTpLhlAasng..rielveaL 21
                 +TpLh+A+++   + ++++aL
  MMETSP0890-20130614|39822_1 41 DTPLHTACRSTivSASILSAL 61
                 7********987777888777 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.4
    PF13606.1  2 GnTpLhlAas 11
                 GnTpL + ++
  MMETSP0890-20130614|39822_1 76 GNTPLAVLCH 85
                 7899877775 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.012
    PF13606.1   2 GnTpLhlAasng.rielv 18 
                  G+T+Lhl ++   +ie++
  MMETSP0890-20130614|39822_1 145 GQTALHLICETTsSIEAI 162
                  9********954266666 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.013
    PF13606.1   2 GnTpLhlAasn 12 
                  G TpLh+ +++
  MMETSP0890-20130614|39822_1 266 GATPLHYLCRR 276
                  77*******95 PP

  == domain 6    score: 10.5 bits;  conditional E-value: 0.00019
    PF13606.1   2 GnTpLhlAas...ngrielveaLlengad 27 
                  G TpLhl      n +++ ++aL++ g+d
  MMETSP0890-20130614|39822_1 304 GHTPLHLLFMneqNANYANLKALIDLGPD 332
                  89*****999454469***********98 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   7.4e+02      37      45 ..       2      10 ..       1      21 [. 0.81
   2 ?    2.5   0.0     0.072     2e+02       2      38 ..      41      80 ..      40      87 .. 0.68
   3 !    7.0   0.0    0.0028       7.7      29      45 ..     139     156 ..     126     165 .. 0.77
   4 !   10.9   0.0   0.00017      0.46      15      44 ..     246     276 ..     234     285 .. 0.85
   5 !    7.6   0.0    0.0018       4.9       1      40 [.     304     347 ..     304     348 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.27
    PF13637.1 37 aLhiAalrg 45
                 aLh+Aa++ 
  MMETSP0890-20130614|39822_1  2 ALHYAAQNP 10
                 789998874 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.072
    PF13637.1  2 ltaLhyaaisgrlel..vklLlekgidinrt.desGntaL 38
                  t+Lh a++s  + +  +  L + ++++    d+ Gnt+L
  MMETSP0890-20130614|39822_1 41 DTPLHTACRSTIVSAsiLSALAQLDKEVCLFeDSIGNTPL 80
                 5677777776655555466666667777777777777776 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0028
    PF13637.1  29 rt.desGntaLhiAalrg 45 
                  r+ + +G taLh+ +++ 
  MMETSP0890-20130614|39822_1 139 RCrNHKGQTALHLICETT 156
                  4459**********9654 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00017
    PF13637.1  15 elvklLlekgidinrt.desGntaLhiAalr 44 
                   +v++L+++ ++   + ++ G t+Lh+ ++r
  MMETSP0890-20130614|39822_1 246 GNVQHLIASTPQYASKlNDAGATPLHYLCRR 276
                  67999**9999999999**********9987 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.0018
    PF13637.1   1 gltaLhyaai...sgrlelvklLlekgid...inrtdesGntaLhi 40 
                  g+t+Lh +++     ++ ++k L++ g+d   i   d +++t+L++
  MMETSP0890-20130614|39822_1 304 GHTPLHLLFMneqNANYANLKALIDLGPDameIL--DQKQRTPLDV 347
                  689*******998899*************54444..5589999986 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   3.1e+02       5      12 ..       2       9 ..       1      11 [. 0.90
   2 !    6.9   0.0    0.0019       5.1       3      20 ..      41      60 ..      40      68 .. 0.78
   3 ?   -0.9   0.0      0.57   1.5e+03       2       8 ..      76      82 ..      75      87 .. 0.80
   4 ?    3.5   0.0     0.023        62       2      10 ..     145     153 ..     144     163 .. 0.87
   5 !    6.0   0.0    0.0037        10       2      13 ..     266     277 ..     265     300 .. 0.83
   6 ?    3.9   0.1     0.017        46       2       8 ..     304     310 ..     303     334 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.11
                 HHHHHHHT CS
   PF00023.25  5 PLHlAalr 12
                 +LH+Aa++
  MMETSP0890-20130614|39822_1  2 ALHYAAQN 9 
                 8*****86 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0019
                 CBHHHHHHHTT..HHHHHHH CS
   PF00023.25  3 fTPLHlAalrg..nlevvkl 20
                 +TPLH A+++   ++++++ 
  MMETSP0890-20130614|39822_1 41 DTPLHTACRSTivSASILSA 60
                 6*******986666666555 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.57
                 SCBHHHH CS
   PF00023.25  2 GfTPLHl 8 
                 G+TPL +
  MMETSP0890-20130614|39822_1 76 GNTPLAV 82
                 9***965 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.023
                  SCBHHHHHH CS
   PF00023.25   2 GfTPLHlAa 10 
                  G+T+LHl +
  MMETSP0890-20130614|39822_1 145 GQTALHLIC 153
                  9*****976 PP

  == domain 5    score: 6.0 bits;  conditional E-value: 0.0037
                  SCBHHHHHHHTT CS
   PF00023.25   2 GfTPLHlAalrg 13 
                  G TPLH+ ++r 
  MMETSP0890-20130614|39822_1 266 GATPLHYLCRRH 277
                  88*****99986 PP

  == domain 6    score: 3.9 bits;  conditional E-value: 0.017
                  SCBHHHH CS
   PF00023.25   2 GfTPLHl 8  
                  G TPLHl
  MMETSP0890-20130614|39822_1 304 GHTPLHL 310
                  99****9 PP

>> PF04281.8  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.4e-05      0.12      41      75 ..     111     145 ..      91     165 .. 0.72
   2 ?   -1.7   0.7      0.63   1.7e+03      26      36 ..     183     193 ..     169     224 .. 0.49

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.4e-05
    PF04281.8  41 isddsdveedEtlldRivALkDivppttRkkissk 75 
                   s+ +++++d t l+R++AL D+vp   R + ++ 
  MMETSP0890-20130614|39822_1 111 KSSTYSFDQDATKLERLMALGDLVPEAARCRNHKG 145
                  34455566999**************9999765544 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.63
    PF04281.8  26 esddeeedeed 36 
                  e ++e e+++ 
  MMETSP0890-20130614|39822_1 183 EAEEEAEEDNA 193
                  11111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       410  (0.0299883); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.43s 00:00:01.11 Elapsed: 00:00:00.93
# Mc/sec: 963.70
//
Query:       MMETSP0890-20130614|39826_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       694  (0.0507607); expected 273.4 (0.02)
Passed bias filter:                      544  (0.0397894); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.42s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 297.73
//
Query:       MMETSP0890-20130614|39829_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-13   49.1   1.0      0.084   13.4   0.0    5.3  5  PF13428.1  Tetratricopeptide repeat
    3.1e-13   49.0  10.6    8.3e-07   28.4   1.3    3.2  3  PF13414.1  TPR repeat
    4.9e-09   35.8   9.5      0.001   18.8   0.4    3.7  4  PF13424.1  Tetratricopeptide repeat
    1.1e-08   34.2   8.9      0.012   15.3   0.1    4.5  4  PF07719.12 Tetratricopeptide repeat
    2.8e-08   32.8  12.1      0.017   14.5   0.4    4.4  4  PF00515.23 Tetratricopeptide repeat
    6.9e-08   32.8   3.3      0.034   14.7   0.0    4.3  5  PF13432.1  Tetratricopeptide repeat
    4.3e-06   26.0   3.4        0.3   10.8   0.0    4.6  5  PF13176.1  Tetratricopeptide repeat
    4.7e-06   26.5   5.4       0.36   11.2   0.0    4.8  5  PF13174.1  Tetratricopeptide repeat
    0.00065   19.6   6.8      0.082   12.9   0.3    3.3  4  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.014   15.0  11.1       0.17   11.6   0.1    4.7  5  PF13181.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   0.00031      0.43       2      44 .]      59     101 ..      58     101 .. 0.95
   2 !   11.3   0.0    0.0003      0.41       3      28 ..      94     119 ..      92     131 .. 0.90
   3 !   11.2   0.0   0.00031      0.42       4      41 ..     135     172 ..     132     175 .. 0.87
   4 ?    4.0   0.0     0.067        91       2      27 ..     167     192 ..     163     203 .. 0.79
   5 !   13.4   0.0   6.2e-05     0.084       6      40 ..     206     240 ..     201     244 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00031
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPddaealllLarl 44 
                  +a l+la +   +++ d+A+++l ++l  + d   all +a++
  MMETSP0890-20130614|39829_1  59 RAKLLLAKLEDKRNNCDQAMQMLIDILDEQKDYIPALLGMAQA 101
                  68899************************************96 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.0003
    PF13428.1   3 allalarallalGdpdeAiallrral 28 
                  all +a+a+l  G++ +A ++l+r+ 
  MMETSP0890-20130614|39829_1  94 ALLGMAQAFLIDGQHTKAKNALKRLT 119
                  899********************985 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00031
    PF13428.1   4 llalarallalGdpdeAiallrralalaPddaealllL 41 
                  +l+la+ + + + +d A++l++r l+ + +  +a+  +
  MMETSP0890-20130614|39829_1 135 YLLLADMYVNKNKFDLAEDLCNRCLKFNLSCGRAWETM 172
                  899**********************9888777777666 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.067
    PF13428.1   2 eallalarallalGdpdeAiallrra 27 
                  +a+  ++++ +    +++A++++++a
  MMETSP0890-20130614|39829_1 167 RAWETMGHIREKEASYKDAAEMYEKA 192
                  57777888888888899999999998 PP

  == domain 5    score: 13.4 bits;  conditional E-value: 6.2e-05
    PF13428.1   6 alarallalGdpdeAiallrralalaPddaealll 40 
                  +la  +l + ++ eAi+ ++++l l+Pd + ++++
  MMETSP0890-20130614|39829_1 206 KLAFNYLKAKRFVEAIDICNKILLLYPDYPKIRHE 240
                  68999************************999876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3   0.00071      0.97      15      65 ..      70     119 ..      59     122 .. 0.85
   2 !   28.4   1.3     6e-10   8.3e-07       6      65 ..     135     193 ..     130     197 .. 0.94
   3 !   16.3   0.0   3.5e-06    0.0048       8      40 ..     206     238 ..     204     245 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00071
    PF13414.1  15 kegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  k+++ d+A +++   l+ ++++  +++++A+a+l  g++  +A  ++++  
  MMETSP0890-20130614|39829_1  70 KRNNCDQAMQMLIDILDEQKDYIPALLGMAQAFLIDGQH-TKAKNALKRLT 119
                  78999********************************75.88888877655 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 6e-10
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  +  l+ ++ +++++d A+++++++l+ + ++  ++  ++++ +k    y++A+e+yekA 
  MMETSP0890-20130614|39829_1 135 YLLLADMYVNKNKFDLAEDLCNRCLKFNLSCGRAWETMGHIREKEA-SYKDAAEMYEKAW 193
                  7889****************************************99.8**********96 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 3.5e-06
    PF13414.1   8 elGnalfkegdydeAieayekAleldpnnaely 40 
                   l+ +++k++++ eAi+ ++k l l p+++++ 
  MMETSP0890-20130614|39829_1 206 KLAFNYLKAKRFVEAIDICNKILLLYPDYPKIR 238
                  57899*************************975 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.7   6.5e+03      40      51 ..      27      38 ..      20      38 .. 0.71
   2 !   10.9   0.1   0.00022       0.3      27      73 ..      73     119 ..      57     121 .. 0.85
   3 !   18.8   0.4   7.5e-07     0.001       3      72 ..     130     192 ..     128     194 .. 0.93
   4 !   10.4   0.0   0.00032      0.44       9      44 ..     205     240 ..     197     248 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.7
    PF13424.1 40 ddhpdtaralnn 51
                  d +++a+alnn
  MMETSP0890-20130614|39829_1 27 ADALRVANALNN 38
                 466778888887 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00022
    PF13424.1  27 lyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                   + +a+++ +  l d+  d+  al+ +a+++l  g++ +A++ l++  
  MMETSP0890-20130614|39829_1  73 NCDQAMQMlIDIL-DEQKDYIPALLGMAQAFLIDGQHTKAKNALKRLT 119
                  6789999955555.66779*************************9975 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 7.5e-07
    PF13424.1   3 dlatilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  dl + +  la+++  + ++d A++l++++l+        ++ + ra+  ++ + ++   y++A e++ekA
  MMETSP0890-20130614|39829_1 130 DLEHGYLLLADMYVNKNKFDLAEDLCNRCLKF-------NLSCGRAWETMGHIREKEASYKDAAEMYEKA 192
                  66677889**********************99.......479***************************9 PP

  == domain 4    score: 10.4 bits;  conditional E-value: 0.00032
    PF13424.1   9 nnlalvlrrlgdydeAlelyekalellrelgddhpd 44 
                  + la ++++ +++ eA+++++k l l+  ++   ++
  MMETSP0890-20130614|39829_1 205 FKLAFNYLKAKRFVEAIDICNKILLLYPDYPKIRHE 240
                  689********************9988766665555 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.011        15       3      30 ..      94     121 ..      92     121 .. 0.90
   2 !   10.1   0.1   0.00042      0.57       4      31 ..     135     162 ..     133     164 .. 0.92
   3 !    5.8   0.2    0.0095        13       2      27 ..     167     192 ..     166     192 .. 0.94
   4 !   15.3   0.1   8.5e-06     0.012       5      34 .]     205     234 ..     205     234 .. 0.95

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.011
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                  al  +++a +  g++ +A++a+++  +l
  MMETSP0890-20130614|39829_1  94 ALLGMAQAFLIDGQHTKAKNALKRLTKL 121
                  67889******************98876 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00042
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleld 31 
                  + +l++ y ++++++ A+++++++l+ +
  MMETSP0890-20130614|39829_1 135 YLLLADMYVNKNKFDLAEDLCNRCLKFN 162
                  889**********************976 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0095
                  HHHHHHHHHHHHTT-HHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekA 27 
                  +a+  +G + +k   y++A+e +ekA
  MMETSP0890-20130614|39829_1 167 RAWETMGHIREKEASYKDAAEMYEKA 192
                  68999********************9 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 8.5e-06
                  HHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                  + l+  y+k++++ eA++ ++k l l+P++
  MMETSP0890-20130614|39829_1 205 FKLAFNYLKAKRFVEAIDICNKILLLYPDY 234
                  679*************************85 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.034        47       3      26 ..      94     117 ..      92     121 .. 0.90
   2 !   14.5   0.4   1.2e-05     0.017       4      31 ..     135     162 ..     134     165 .. 0.93
   3 !    6.8   0.1    0.0034       4.7       2      27 ..     167     192 ..     166     192 .. 0.92
   4 !   13.2   0.3   3.2e-05     0.044       7      34 .]     207     234 ..     205     234 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.034
                  HHHHHHHHHHHTT-HHHHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyyek 26 
                  al ++++a+l  g++ +A  + ++
  MMETSP0890-20130614|39829_1  94 ALLGMAQAFLIDGQHTKAKNALKR 117
                  8999**************999886 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
   PF00515.23   4 lynlGnaylklgkydeAleyyekALeln 31 
                  +  l+ +y +++k+d A++ ++++L+ n
  MMETSP0890-20130614|39829_1 135 YLLLADMYVNKNKFDLAEDLCNRCLKFN 162
                  77899********************987 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0034
                  HHHHHHHHHHHHTT-HHHHHHHHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekA 27 
                  +a+  +G++  k   y++A e yekA
  MMETSP0890-20130614|39829_1 167 RAWETMGHIREKEASYKDAAEMYEKA 192
                  58888999999999***********9 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 3.2e-05
                  HHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   7 lGnaylklgkydeAleyyekALelnPnn 34 
                  l+  ylk +++ eA++ ++k L l+P++
  MMETSP0890-20130614|39829_1 207 LAFNYLKAKRFVEAIDICNKILLLYPDY 234
                  55669*********************97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.9   5.3e+03      34      57 ..      23      46 ..      18      50 .. 0.66
   2 !   14.7   0.0   2.5e-05     0.034       1      57 [.      62     118 ..      62     130 .. 0.92
   3 !    9.9   0.0   0.00076         1      11      58 ..     106     159 ..     105     172 .. 0.91
   4 ?   -0.9   0.0       1.8   2.5e+03      10      23 ..     179     192 ..     171     192 .. 0.67
   5 !   11.0   0.0   0.00034      0.47       1      34 [.     205     238 ..     205     245 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.9
    PF13432.1 34 llllaeallrlgrldeAaallraa 57
                  +  a+al  ++ l  ++  ++++
  MMETSP0890-20130614|39829_1 23 AYVSADALRVANALNNEISQFEHL 46
                 466677777777777777666655 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.5e-05
    PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAaallraa 57 
                  l lA+++ ++++ d+A + l ++l+++ ++  all+ a+a+l  g++ +A  +l+++
  MMETSP0890-20130614|39829_1  62 LLLAKLEDKRNNCDQAMQMLIDILDEQKDYIPALLGMAQAFLIDGQHTKAKNALKRL 118
                  57999999******************************************9888876 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00076
    PF13432.1  11 GdydeAlaaleaalala......PeaaeallllaeallrlgrldeAaallraal 58 
                  G+  +A +al+++ +l+       +    +llla+++  ++++d A+ l ++ l
  MMETSP0890-20130614|39829_1 106 GQHTKAKNALKRLTKLPfshdfaDDLEHGYLLLADMYVNKNKFDLAEDLCNRCL 159
                  8999**************999988899********************9998866 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 1.8
    PF13432.1  10 aGdydeAlaaleaa 23 
                     y++A++ +e+a
  MMETSP0890-20130614|39829_1 179 EASYKDAAEMYEKA 192
                  55678888887764 PP

  == domain 5    score: 11.0 bits;  conditional E-value: 0.00034
    PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeal 34 
                  ++lA ++l+a+++ eA+++ +++l l+P+++ ++
  MMETSP0890-20130614|39829_1 205 FKLAFNYLKAKRFVEAIDICNKILLLYPDYPKIR 238
                  57999***********************988765 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.4   5.5e+02       4      21 ..      63      80 ..      62      88 .. 0.86
   2 ?    3.7   0.0     0.042        58       1      24 [.      94     117 ..      94     126 .. 0.90
   3 !   10.8   0.0   0.00022       0.3       2      27 ..     135     160 ..     134     166 .. 0.91
   4 !    7.6   0.1    0.0024       3.2       2      24 ..     169     191 ..     168     200 .. 0.87
   5 ?   -2.5   0.0       4.2   5.7e+03      12      26 ..     214     228 ..     211     233 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.4
    PF13176.1  4 nLarlysrlgdyekAiel 21
                  La+l  ++++ ++A ++
  MMETSP0890-20130614|39829_1 63 LLAKLEDKRNNCDQAMQM 80
                 7999*9********9876 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.042
    PF13176.1   1 allnLarlysrlgdyekAielyer 24 
                  all +a+++  +g++ kA ++++r
  MMETSP0890-20130614|39829_1  94 ALLGMAQAFLIDGQHTKAKNALKR 117
                  7999**************999999 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00022
    PF13176.1   2 llnLarlysrlgdyekAielyeraLa 27 
                  +l La++y++ ++++ A++l+ r+L+
  MMETSP0890-20130614|39829_1 135 YLLLADMYVNKNKFDLAEDLCNRCLK 160
                  789******************99886 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0024
    PF13176.1   2 llnLarlysrlgdyekAielyer 24 
                  +  ++++ ++   y++A+e+ye+
  MMETSP0890-20130614|39829_1 169 WETMGHIREKEASYKDAAEMYEK 191
                  556999****************9 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 4.2
    PF13176.1  12 lgdyekAielyeraL 26 
                    ++ +Ai+++ + L
  MMETSP0890-20130614|39829_1 214 AKRFVEAIDICNKIL 228
                  557889999987744 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.055        75       2      28 ..      60      86 ..      59      90 .. 0.83
   2 !   11.2   0.0   0.00026      0.36       2      28 ..      94     120 ..      93     124 .. 0.89
   3 ?    0.1   0.0       0.9   1.2e+03       3      27 ..     135     159 ..     133     160 .. 0.83
   4 ?   -0.4   0.0       1.4   1.8e+03       9      25 ..     175     191 ..     171     193 .. 0.72
   5 !    9.0   0.0    0.0013       1.8       4      32 ..     205     233 ..     204     234 .. 0.96

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  2 AlyklalsyyklgdtdeAlealerlik 28
                 A ++la++ +k ++ d+A+++l ++++
  MMETSP0890-20130614|39829_1 60 AKLLLAKLEDKRNNCDQAMQMLIDILD 86
                 77999******77******99866665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                  Al+ +a++++  g++++A+ al+rl k
  MMETSP0890-20130614|39829_1  94 ALLGMAQAFLIDGQHTKAKNALKRLTK 120
                  8999999999866***********987 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.9
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   3 lyklalsyyklgdtdeAlealerli 27 
                  +++la  y + +++d A ++ +r++
  MMETSP0890-20130614|39829_1 135 YLLLADMYVNKNKFDLAEDLCNRCL 159
                  7999999999879999999888876 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 1.4
                  HHHH.HHHHHHHHHHHHH CS
    PF13174.1   9 syyk.lgdtdeAlealer 25 
                  +++k +  + +A e++e+
  MMETSP0890-20130614|39829_1 175 IREKeA-SYKDAAEMYEK 191
                  566634.78899999997 PP

  == domain 5    score: 9.0 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
    PF13174.1   4 yklalsyyklgdtdeAlealerlikeyPd 32 
                  +kla  y+k++++ eA+++ ++++  yPd
  MMETSP0890-20130614|39829_1 205 FKLAFNYLKAKRFVEAIDICNKILLLYPD 233
                  89*******99*****************8 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.3   1.7e+03      41      41 ..      30      30 ..       6      84 .. 0.57
   2 !   12.9   0.3     6e-05     0.082      12      80 ..      81     154 ..      58     158 .. 0.75
   3 !    7.9   0.8    0.0022         3      24      84 .]     132     192 ..     123     192 .. 0.81
   4 !    8.5   0.2    0.0014       1.9       4      51 ..     181     228 ..     178     245 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.3
                 H CS
    PF12895.2 41 y 41
                  
  MMETSP0890-20130614|39829_1 30 L 30
                 2 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 6e-05
                  HHHHCCC-ST-HHHH...CHHHHHHHHHH---HHHHHHHHHC.TSHCHCB.....HHHHHHH.HHHHHHTT-HHHHCCC CS
    PF12895.2  12 aekllaespkdpeda...ylyalAlclylngeykrAyellrk.leldsss.....lgcryll.ArcllklgkydeAiav 80 
                  +  +l e++     +   +l+ +A++++  g++++A ++l++  +l  s+     l+  yll A  ++  +k+d A+++
  MMETSP0890-20130614|39829_1  81 LIDILDEQK-----DyipALLGMAQAFLIDGQHTKAKNALKRlTKLPFSHdfaddLEHGYLLlADMYVNKNKFDLAEDL 154
                  444444443.....13347888******************99977777777777788888888*****99999999875 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0022
                  HHHCHHHHHHHHHH---HHHHHHHHHC.TSHCHCBHHHHH.HHHHHHHHTT-HHHHCCCHHHH CS
    PF12895.2  24 edaylyalAlclylngeykrAyellrk.leldssslgcry.llArcllklgkydeAiavLeka 84 
                  e+ yl+ lA  + + ++++ A +l+++ l+++ s  g ++  +++  +k   y++A++ +eka
  MMETSP0890-20130614|39829_1 132 EHGYLL-LADMYVNKNKFDLAEDLCNRcLKFNLSC-GRAWeTMGHIREKEASYKDAAEMYEKA 192
                  566777.9*****************9987777766.777746699999999999999999985 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0014
                  -HHHHHHHHHHHCCC-ST-HHHH..CHHHHHHHHHH---HHHHHHHHHC.T CS
    PF12895.2   4 nyknAlflaekllaespkdpeda..ylyalAlclylngeykrAyellrk.l 51 
                   yk+A  ++ek++ +++++ ++   + +  A  +++++++ +A+++++k l
  MMETSP0890-20130614|39829_1 181 SYKDAAEMYEKAWLLEHET-SAPigFKL--AFNYLKAKRFVEAIDICNKiL 228
                  6899999999999998732.33334555..999999999999999997753 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.5   3.4e+03       7      24 ..      64      81 ..      59      91 .. 0.57
   2 ?    3.3   0.0     0.054        74       5      30 ..      96     121 ..      92     122 .. 0.77
   3 ?   11.6   0.1   0.00012      0.17       2      30 ..     133     161 ..     132     163 .. 0.93
   4 ?    3.0   0.1     0.068        94       2      27 ..     167     192 ..     166     192 .. 0.90
   5 ?    0.5   0.1      0.43   5.9e+02      11      33 ..     211     233 ..     206     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.5
                 ---HHHHTT-HHHHHHHH CS
    PF13181.1  7 lGdiYrqlGdydkAkeyl 24
                 l++++ + ++ d+A++ l
  MMETSP0890-20130614|39829_1 64 LAKLEDKRNNCDQAMQML 81
                 555655555556666554 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.054
                  TT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   5 ynlGdiYrqlGdydkAkeylekalel 30 
                  + ++++++  G++ kAk++l++  +l
  MMETSP0890-20130614|39829_1  96 LGMAQAFLIDGQHTKAKNALKRLTKL 121
                  55667777779*********987765 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00012
                  --TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalel 30 
                  + y++l+d Y +++++d+A+   +++l+ 
  MMETSP0890-20130614|39829_1 133 HGYLLLADMYVNKNKFDLAEDLCNRCLKF 161
                  5799**********************996 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.068
                  --TTT---HHHHTT-HHHHHHHHH-- CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeyleka 27 
                  +a+  +G+i ++   y+ A e +eka
  MMETSP0890-20130614|39829_1 167 RAWETMGHIREKEASYKDAAEMYEKA 192
                  688889999999999*********98 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.43
                  HHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1  11 YrqlGdydkAkeylekalelkpr 33 
                  Y++ +++ +A+   +k+l l p+
  MMETSP0890-20130614|39829_1 211 YLKAKRFVEAIDICNKILLLYPD 233
                  77888999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.39s 00:00:01.02 Elapsed: 00:00:00.77
# Mc/sec: 781.15
//
Query:       MMETSP0890-20130614|39843_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   63.7   0.2      1e-10   40.7   0.0    2.0  2  PF01142.13 tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> PF01142.13  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     4e-09   5.4e-05     213     251 ..      24      64 ..       2      73 .. 0.72
   2 !   40.7   0.0   7.5e-15     1e-10     295     377 ..      74     149 ..      62     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4e-09
   PF01142.13 213 e..kekdykkalealpkklrslflsAyqSylFNrvlserle 251
                     + +d +ka++a+p k r ++++AyqS lFN + s+   
  MMETSP0890-20130614|39843_1  24 AyaRFGDAHKAMSAVPFKSRIIWIHAYQSRLFNAAASQLQS 64 
                  244778999*************************9998544 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 7.5e-15
   PF01142.13 295 lplpGrkkllaegeaeelekeileeegltlelfkkleklklkgerRalllkpenlsie.leeeekltlsFsLpkGsYATsvlre 377
                  +pl+G k++ +++e+     +il e+g+tl++fk   + k +g++R+l+    +l+++ l e+  l+++F+Lp+G++AT++l++
  MMETSP0890-20130614|39843_1  74 IPLVGAKTPAEHQEQ----IRILTEDGITLDDFK---REKCNGAHRPLRATATHLQVNsLGED-ALEFTFRLPPGAFATVFLSS 149
                  799999666655553....479******666666...79*****************9945665.9****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       311  (0.0227472); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.81
# Mc/sec: 488.15
//
Query:       MMETSP0890-20130614|39840_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-77  257.4   0.0    1.1e-76  256.9   0.0    1.2  1  PF01167.13 Tub family


Domain annotation for each model (and alignments):
>> PF01167.13  Tub family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.9   0.0   8.1e-81   1.1e-76       5     246 .]      24     248 ..      19     248 .. 0.93

  Alignments for each domain:
  == domain 1    score: 256.9 bits;  conditional E-value: 8.1e-81
   PF01167.13   5 dalvqCfikrdkskldkglyltlslaleeekgkfLLaarkrkrskttnylisldakdlsrsseayigklrsnllgtkfivyDtgqnekkaklvspkvasgrqelaavsyelnvLGtrGPrrmtvilpsieasaeeeggrvpvqplneeqeslleeeqkkkkesllvLknkaPrWneelqsyvLnfrGrvtvasvknfqlvaasepdkivlqfGkvakdvftmDyryPlsalqafaiclssfd 246
                    +vqC+ikr++s+++k l++ ++++++ e ++fL++++kr + kt+nylis+  +dl r+s++yigklr+n+ gt+f +yD g  +++           r el+av+y  nvLG+rGPr+m+v++p i +++   + +   +p    ++ +l +++ ++ ++l+   nk+PrWne+ ++yvLnf+Grvt asvknfqlv+ +e++ i+lqfG+v+kd ftmD+++P++++ afai+lssfd
  MMETSP0890-20130614|39840_1  24 AGVVQCYIKRNRSGVSK-LFPEYYVYMK-EGDRFLMCSKKRPNNKTSNYLISMAEHDLKRNSKNYIGKLRANFAGTEFQIYDAGDDHDS-----------RTELGAVIYTSNVLGSRGPRKMQVAVPKIIEQQD--AKNSDDTPCI-VSD-ILGKMKAHDYSQLVYTINKPPRWNEQVGAYVLNFNGRVTMASVKNFQLVQPDEQESILLQFGRVGKDEFTMDFQWPMTPFAAFAITLSSFD 248
                  4689**********986.9*******98.7789**************************************************998874...........679*************************988877..3344555555.455.8999**************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       378  (0.0276477); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:01.33
# Mc/sec: 457.65
//
Query:       MMETSP0890-20130614|39845_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00017   21.2   2.6     0.0075   15.9   0.4    2.2  2  PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
     0.0003   20.4   8.2    0.00092   18.8   1.4    2.2  3  PF06103.6  Bacterial protein of unknown function (DUF948)
    0.00052   19.4   4.2    0.00052   19.4   2.9    2.2  2  PF01442.13 Apolipoprotein A1/A4/E domain
    0.00081   19.0  13.2      0.024   14.3   4.5    2.6  2  PF07889.7  Protein of unknown function (DUF1664)
     0.0042   15.8   7.2     0.0047   15.6   5.0    1.0  1  PF11285.3  Protein of unknown function (DUF3086)
     0.0099   15.3   4.0     0.0099   15.3   2.8    3.1  3  PF10224.4  Predicted coiled-coil protein (DUF2205)
  ------ inclusion threshold ------
       0.01   15.2  20.2      0.037   13.3  14.0    1.8  1  PF00038.16 Intermediate filament protein
       0.01   15.2  15.2       0.03   13.7   3.4    2.1  2  PF05335.8  Protein of unknown function (DUF745)
      0.011   14.1   9.5      0.016   13.5   6.6    1.2  1  PF13166.1  AAA domain
      0.019   15.2   0.4      0.019   15.2   0.3    2.3  2  PF02465.13 Flagellar hook-associated protein 2 C-terminus
       0.02   14.8  12.3       0.34   10.8   0.3    2.2  2  PF07464.6  Apolipophorin-III precursor (apoLp-III)
      0.024   11.8  16.9       0.03   11.5  11.7    1.0  1  PF12128.3  Protein of unknown function (DUF3584)
      0.028   13.7   0.2      0.028   13.7   0.1    2.2  2  PF04218.8  CENP-B N-terminal DNA-binding domain
      0.034   13.6   5.5       0.21   11.0   3.8    2.0  1  PF04356.7  Protein of unknown function (DUF489)
      0.037   13.2  14.5       0.46    9.6   0.2    2.1  2  PF05276.9  SH3 domain-binding protein 5 (SH3BP5)
      0.039   13.6   0.6      0.065   12.9   0.1    1.6  2  PF11713.3  Peptidase C80 family
      0.044   12.6   2.5      0.068   12.0   0.3    1.6  2  PF05394.6  Avirulence protein
      0.047   12.4  11.0      0.048   12.4   7.1    1.4  2  PF14362.1  Domain of unknown function (DUF4407)
      0.057   13.1   4.4      0.044   13.4   1.0    2.0  2  PF10158.4  Tumour suppressor protein
      0.081   11.6   6.3       0.11   11.2   4.4    1.1  1  PF03036.11 Perilipin family
      0.094   11.6   8.3       0.12   11.3   5.8    1.3  1  PF07851.8  TMPIT-like protein
      0.099   12.5  15.6       0.56   10.1   9.8    2.2  2  PF02050.11 Flagellar FliJ protein
       0.12   12.4  11.5        2.1    8.3   8.0    2.0  1  PF13339.1  Apoptosis antagonizing transcription factor
       0.13   12.4   4.8        2.3    8.4   1.5    3.1  2  PF05531.7  Nucleopolyhedrovirus P10 protein
       0.14   10.6  21.8        0.2   10.0  15.1    1.2  1  PF05701.6  Plant protein of unknown function (DUF827)
       0.14   12.0   0.4       0.14   12.0   0.3    3.1  2  PF12277.3  Protein of unknown function (DUF3618)
       0.18   11.2   6.6       0.17   11.3   3.2    1.7  2  PF05073.7  Baculovirus P24 capsid protein
       0.21    9.9  15.1       0.32    9.3  10.5    1.3  1  PF05667.6  Protein of unknown function (DUF812)
       0.22   11.5   2.5        2.6    8.1   0.8    2.5  2  PF00672.20 HAMP domain
       0.26   11.0   6.3        2.3    8.0   0.2    2.4  2  PF04350.8  Pilus assembly protein, PilO
       0.32   10.7  15.0       0.38   10.4   9.1    1.8  2  PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
       0.38   10.6  17.3       0.37   10.7   4.7    2.3  2  PF02403.17 Seryl-tRNA synthetase N-terminal domain
       0.42   10.1  19.2       0.66    9.4  11.8    1.8  2  PF03962.10 Mnd1 family
       0.45   10.3   5.6        1.2    9.0   2.1    2.7  2  PF04899.7  MbeD/MobD like
       0.52   10.3   8.4        1.8    8.5   0.7    2.4  2  PF12536.3  Patatin phospholipase
       0.59    7.4   7.9        1.1    6.6   5.5    1.4  1  PF05478.6  Prominin
       0.61    9.2   5.5        0.2   10.8   0.7    2.1  2  PF09824.4  ArsR transcriptional regulator
       0.69    9.5  12.0       0.24   11.0   5.0    2.2  2  PF13758.1  Prefoldin subunit
       0.69    8.9  11.1        1.2    8.1   7.7    1.4  1  PF02601.10 Exonuclease VII, large subunit
        0.7    8.3  18.9       0.15   10.6   5.7    2.0  2  PF08317.6  Spc7 kinetochore protein
       0.73    9.5  16.7       0.78    9.4   1.4    3.0  2  PF06428.6  GDP/GTP exchange factor Sec2p
        0.9    9.7  20.8          2    8.6   4.6    2.8  2  PF06005.7  Protein of unknown function (DUF904)
       0.96    8.8   4.6       0.54    9.6   0.7    2.2  3  PF00517.12 Retroviral envelope protein
          1    9.4   5.2        3.9    7.4   0.7    2.5  2  PF07928.7  Vps54-like protein
        1.1    9.4  14.6         27    4.9   9.5    2.2  1  PF00435.16 Spectrin repeat
        1.3    6.6  12.0        1.6    6.3   8.3    1.2  1  PF01496.14 V-type ATPase 116kDa subunit family
        1.4    9.2  14.2        1.5    9.1   0.1    3.0  3  PF05957.8  Bacterial protein of unknown function (DUF883)
        1.6    8.3   4.9          2    8.0   3.4    1.2  1  PF05192.13 MutS domain III
        1.7    8.8  15.7        1.9    8.6  10.4    1.3  1  PF03234.9  Cdc37 N terminal kinase binding
        2.1    8.1  26.3        2.6    7.9   9.4    2.6  2  PF13863.1  Domain of unknown function (DUF4200)
        2.2    8.3  10.1       0.16   11.9   2.3    2.1  2  PF13270.1  Domain of unknown function (DUF4061)
        2.3    7.6  17.5        3.5    7.0   4.4    2.1  2  PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
        2.4    8.5  13.7         25    5.2   8.3    2.7  2  PF09177.6  Syntaxin 6, N-terminal
        2.7    7.6  21.4       0.95    9.1   5.9    2.3  2  PF10211.4  Axonemal dynein light chain
        3.1    7.8  12.1        2.2    8.2   4.4    2.1  2  PF08702.5  Fibrinogen alpha/beta chain family
        3.4    7.4  25.2        4.5    7.0   0.1    4.1  3  PF12329.3  TATA element modulatory factor 1 DNA binding
        4.3    7.6  13.4        7.6    6.8   3.1    3.1  2  PF12732.2  YtxH-like protein
        4.7    6.6  20.7         87    2.5  14.3    2.0  1  PF04156.9  IncA protein
        5.2    6.9  11.2        6.7    6.5   7.8    1.1  1  PF11827.3  Protein of unknown function (DUF3347)
        5.2    6.4   5.4        1.2    8.5   1.2    1.7  2  PF07074.7  Translocon-associated protein, gamma subunit (TRAP-gamma)
        5.3    7.5   9.1        4.1    7.8   0.7    2.6  2  PF03955.9  Adenovirus hexon-associated protein (IX)
        5.8    6.7  19.7         96    2.7  13.7    2.0  1  PF03938.9  Outer membrane protein (OmpH-like)
          6    6.7  12.8         25    4.7   8.9    1.8  1  PF08432.5  Fungal protein of unknown function (DUF1742)
        6.3    6.8  16.7          1    9.4   4.8    2.1  2  PF00804.20 Syntaxin
        6.6    6.8  10.9          3    7.9   2.8    2.1  2  PF00611.18 Fes/CIP4, and EFC/F-BAR homology domain
        7.3    6.7  14.7    2.9e+02    1.6  10.2    2.2  1  PF01519.11 Protein of unknown function DUF16
        7.5    5.9   9.9         18    4.7   0.5    2.4  2  PF12999.2  Glucosidase II beta subunit-like
        7.7    6.1  21.3         56    3.3  14.4    2.3  1  PF07926.7  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> PF04513.7  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   3.7e-05    0.0075      27      84 ..      30      86 ..      21      97 .. 0.91
   2 ?    5.4   0.0     0.068        14      39      78 ..     102     141 ..      93     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.7e-05
    PF04513.7 27 lqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlr 84
                 +++ ++ a++++ +++ +t+  +++ d+++  + ++++l + +t+L++++++lqd l+
  MMETSP0890-20130614|39845_1 30 ALEEKV-AKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLD 86
                 556667.999********************************************9886 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.068
    PF04513.7  39 lldaietqLnalsedlksllaeldtrldtlltnLtdalna 78 
                  ++++ e ++n+++++++++ +e+  +l+++l+++ + +  
  MMETSP0890-20130614|39845_1 102 IIQNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEV 141
                  5666678899999999999999999999988888887764 PP

>> PF06103.6  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.4   4.6e-06   0.00092      21      89 ..      14      83 ..       7      84 .. 0.89
   2 !   11.4   1.0   0.00095      0.19      21      71 ..      71     121 ..      65     129 .. 0.70
   3 ?    4.9   0.3       0.1        21      20      56 ..      95     131 ..      90     147 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.6e-06
    PF06103.6 21 lkklkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetld.pvfqavadlgesvsdlnq 89
                 l + ++ ++e+++  + l+++v +i++e ee  +++ e++ D+ ++ + ++ ++++ + +l+++v++l +
  MMETSP0890-20130614|39845_1 14 LAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQeQLVDRITELSHTVQELQD 83
                 5566788*****************************************997479*************975 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00095
    PF06103.6  21 lkklkktldevnktvkkltkqvdgitketeellaktnelleDvneKvetld 71 
                  + +l+ t++e+++ ++  +++   +++e +e++++ ++  ++++ K+e++ 
  MMETSP0890-20130614|39845_1  71 ITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMA 121
                  455677777777777777777777777777777777777777777777665 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.1
    PF06103.6  20 tlkklkktldevnktvkkltkqvdgitketeellakt 56 
                  tl++ ++++++ ++ +++++ +++   +e   +l++t
  MMETSP0890-20130614|39845_1  95 TLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKET 131
                  4444455555555555555555555555555555544 PP

>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.1      0.12        24     116     186 ..      10      78 ..       2      79 .. 0.50
   2 !   19.4   2.9   2.6e-06   0.00052       2      78 ..      66     141 ..      65     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.12
                  HHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01442.13 116 lkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqveelreklapyaedlqekleqqvaelrsqv 186
                  l+ +La  +e ++  + e+ + l e++++   e++++  ++  e+ + ++++ + +qe+l  ++ el+++v
  MMETSP0890-20130614|39845_1  10 LQMQLAERTELMK-EAREERRALEEKVAKIKSEFEEEQTTA-MEITRDMTRQYKGMQEQLVDRITELSHTV 78 
                  4444443333333.334444555555555555555554333.34445556666666666666666666654 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.6e-06
                  HHHHHHHHHHHHHHHHHHT-----HHHHHH---HHHHHHHH---HHHHHHHH---HHHHHHHT-----HHHHHHHHH CS
   PF01442.13   2 llqdsldevnsyaeeLqeqlaplaqelraqLaketeelreelqkeleevrarlepyrdevkqqlgqnleelrqrlkp 78 
                  +l d+++e++ +++eLq +l    +e + +L +  +e+ +  + e++e++a++e  ++e+  +l++ l+++rqr++ 
  MMETSP0890-20130614|39845_1  66 QLVDRITELSHTVQELQDRLDAAEREHSLTLREK-DEIIQNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEV 141
                  6889*****************9555555555555.5666667********************************986 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.5     0.018       3.7      72     111 ..       9      48 ..       4      54 .. 0.85
   2 !   14.3   4.5   0.00012     0.024      40     120 ..      55     140 ..      49     145 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.018
    PF07889.7  72 nlddkldeqkeiskeikeevteiredlsaikedvkslkqv 111
                  +l+ +l e +e++ke +ee   ++e++++ik+++++ +++
  MMETSP0890-20130614|39845_1   9 SLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTT 48 
                  68889999***********************999876655 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 0.00012
    PF07889.7  40 nladAvasvtkqlekvseavasakkhLsqridnldd....kldeqkeiskeikeevteiredlsaikedvk.slkqvvegLeskle 120
                  ++    + + +ql +  +++ ++ ++L +r+d  ++    +l e+ ei+++ ++e++ei+ +++++ +++  +lk+++ ++++++e
  MMETSP0890-20130614|39845_1  55 DMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAERehslTLREKDEIIQNKEDEINEIKAKMEDMASEFGgMLKETLDKMRQRIE 140
                  45555555666666666666666666666666655422224667889999999999999999999999986367888888888775 PP

>> PF11285.3  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   5.0   2.3e-05    0.0047      11     138 ..      19     150 ..       8     153 .] 0.69

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.3e-05
    PF11285.3  11 errqalekeieelerrkerlekelkts...faGqsdelarrvkgfkdylvgalqdlaasveqlelvvqkvvvkps.pldeeaakeeeeeaeaaetakaveetfkedeelirelleqyreqPdyyadpWklrr 138
                  e  ++ ++e + le++  ++++e++++       + +++r+ kg+++ lv  + +l+++v++l+   ++   + s  l e+++  +++e e +e ++ +e+  +e   +++e+l++ r++ +  a++  + r
  MMETSP0890-20130614|39845_1  19 ELMKEAREERRALEEKVAKIKSEFEEEqttAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSlTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEVSANTIDIER 150
                  33344445556677777777777654400044567899***********************99877666655554256677777777776777777777777777788899999999988887777666655 PP

>> PF10224.4  Predicted coiled-coil protein (DUF2205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.4      0.57   1.1e+02      11      42 ..      10      41 ..       3      51 .. 0.72
   2 !   15.3   2.8   4.9e-05    0.0099       9      57 ..      55     104 ..      45     122 .. 0.85
   3 ?    2.7   0.1       0.4        81      28      41 ..     128     141 ..     107     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.57
    PF10224.4 11 eklekeekqrlieqvleLqdsLedLseRveaV 42
                  +++  e+++l+++++e + +Le+ ++++ + 
  MMETSP0890-20130614|39845_1 10 LQMQLAERTELMKEAREERRALEEKVAKIKSE 41
                 46778889999999999998888877777543 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 4.9e-05
    PF10224.4   9 eleklekeekqrlieqvleLqdsLedLseRveaVkeen.dKLeseNkvLq 57 
                  ++ +  k  +++l+  + eL ++ ++L +R++a + e+ + L++  +++q
  MMETSP0890-20130614|39845_1  55 DMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHsLTLREKDEIIQ 104
                  66677788899************************999447888777776 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.4
    PF10224.4  28 LqdsLedLseRvea 41 
                  L+++L+++ +R+e+
  MMETSP0890-20130614|39845_1 128 LKETLDKMRQRIEV 141
                  99**********96 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  14.0   0.00018     0.037     155     277 ..       8     130 ..       1     144 [. 0.72

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00018
   PF00038.16 155 vnvevdaarkldLtkilkeiraqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekiseleeelqelkee 277
                   +++++ a++++L k  +e r++ ee+++k+++e ee   + +e  ++   + + + ++    itel +++q+l+  l++  ++++ + r+  e+ ++ e e++++++k++++ +e   + +e
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKE 130
                  556777778888888888888888888888888888887777777777777777777777788888888888888888888877777777777777777777777777777777776555444 PP

>> PF05335.8  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.4   0.00015      0.03     130     175 ..       5      50 ..       2      54 .. 0.93
   2 ?    7.3   1.8     0.014       2.8     104     167 ..      61     124 ..      51     132 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00015
    PF05335.8 130 kvaseaqqelaektqLleaAkkrvevlerqlkearkDyektkkaAk 175
                  ++a++ q++lae+t+L+++A++    le+++++ ++++e+ +  A 
  MMETSP0890-20130614|39845_1   5 SSATSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAM 50 
                  678999**********************************999986 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.014
    PF05335.8 104 akqaqkqlktlkallkeaqenleniekvaseaqqelaektqLleaAkkrvevlerqlkearkDy 167
                    + ++ ++ +++l +++qe  ++ +++  e    l ek +++++    +++++ ++++  +++
  MMETSP0890-20130614|39845_1  61 KGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEF 124
                  4455666777888888888888888888888888889999999998888888888888887777 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   6.6     8e-05     0.016     301     420 ..      12     136 ..       2     151 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8e-05
    PF13166.1 301 eklleelesilseekensefkedveelkaelea...........leeeleklekaleeKlkdpfsslelesiadeieeinelvdkinelirkhNekidnlkeeknkakkklwlhlvaelkedideyekklk 420
                   +l e+ e + + ++e+ +++e+v+++k+e+e+           ++ ++++++++l +++++++++++  +++d++++ +    +   ++r+ +e+i+n ++e n++k+k++  +++e+  +++e  +k++
  MMETSP0890-20130614|39845_1  12 MQLAERTELMKEAREERRALEEKVAKIKSEFEEeqttameitrdMTRQYKGMQEQLVDRITELSHTVQ--ELQDRLDAAE---REHSLTLREKDEIIQNKEDEINEIKAKMED-MASEFGGMLKETLDKMR 136
                  34455555555556666666666666666666633333333333666666666666666666666333..5555555433...233446899999999999999999999966.66667666665554444 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.6       1.5   3.1e+02      20      37 ..      30      48 ..       4      79 .. 0.54
   2 ?   15.2   0.3   9.3e-05     0.019       7      61 ..      79     135 ..      75     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 1.5
   PF02465.13 20 pl.drlkqqeqkleaklsa 37
                  l ++ ++ ++++e +++ 
  MMETSP0890-20130614|39845_1 30 ALeEKVAKIKSEFEEEQTT 48
                 1122333333333333333 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 9.3e-05
   PF02465.13   7 eslvkklmaaerapldrlkqqeqkleaklsaygtlksalsdlqsalkalksts..af 61 
                  ++l + l aaer    +l ++ + +++k ++++++k++++d+ s +  + +++  ++
  MMETSP0890-20130614|39845_1  79 QELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKETldKM 135
                  677788999***********************************9998866432244 PP

>> PF07464.6  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.2     0.012       2.3      85     152 ..      19      89 ..       4      92 .. 0.80
   2 ?   10.8   0.3    0.0017      0.34      40      84 ..     107     151 ..      90     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.012
    PF07464.6  85 evekkAqelrdklq...aavqstvqEaqKlakevaenveetneklapklKklyddfvknleeviKkleeak 152
                  e+ k+A e r +l    a+++s  +E q +a e+ +++    + ++++l + + + + +++e + +l  a 
  MMETSP0890-20130614|39845_1  19 ELMKEAREERRALEekvAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAE 89 
                  556666665555542226788999999****************************9999999999998776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0017
    PF07464.6  40 lqqlkalkasLdealkdangkakealeqlrekiEktaeelrkahP 84 
                  +  ++++ka++++  ++  g +ke l+++r++iE +a+ +  + P
  MMETSP0890-20130614|39845_1 107 EDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEVSANTIDIERP 151
                  5678999******9*********************9999877666 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  11.7   0.00015      0.03     600     742 ..       5     140 ..       2     148 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
    PF12128.3 600 aseeeLrerlqaleealqsaeakqkqaeeqlkqlnaeleeakravaeakqalkqarlelqrlkneqqslkdklekalaerkqqaeeqlqkldaelkqleekkkaaleelkddlreerlekkakwqevegeldeqlaqlkaaie 742
                   s + L+ +l+  +e +++a++++ ++ee++++++ e ee++       +a++ +r+  ++ k  q++l d++++   +  q+ + +l+  + e  +  ++k++++++++d+ +e + ++++   e  g l+e l+++ + ie
  MMETSP0890-20130614|39845_1   5 SSATSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQ------TTAMEITRDMTRQYKGMQEQLVDRITEL-SHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRIE 140
                  555667777777777777777777777777777777666554......5677778888888888888888888764.556677888888888888888888888888888888888888888888888888888888888776 PP

>> PF04218.8  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       5.8   1.2e+03       9      18 ..      31      40 ..      25      56 .. 0.66
   2 ?   13.7   0.1   0.00014     0.028       5      21 ..      92     108 ..      89     125 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 5.8
    PF04218.8  9 lreKievIqr 18
                 l+eK++ I++
  MMETSP0890-20130614|39845_1 31 LEEKVAKIKS 40
                 5888888875 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 0.00014
    PF04218.8   5 rsLTlreKievIqrlee 21 
                   sLTlreK e+Iq  e+
  MMETSP0890-20130614|39845_1  92 HSLTLREKDEIIQNKED 108
                  59***********9987 PP

>> PF04356.7  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.8    0.0011      0.21      37     146 ..      30     144 ..       4     151 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0011
    PF04356.7  37 lletnpestedvyggee.nlklGletlesqlnkkskekdaeltryalsllaLerkLskn.kealaqlgerieqierqlehfel...lhenvianlasiYsdtiStlgpriqvkGe 146
                   le + +++++ +++e+    +  + +++q +  +++   ++t    ++ +L+ +L+   +e   +l+e+ e i+++ ++++      e++ ++++ + ++t+ ++++ri v+ +
  MMETSP0890-20130614|39845_1  30 ALEEKVAKIKSEFEEEQtTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAeREHSLTLREKDEIIQNKEDEINEikaKMEDMASEFGGMLKETLDKMRQRIEVSAN 144
                  3455555555555555532222223444555555566666666677777777777765413444566666666666655552234488999********************9876 PP

>> PF05276.9  SH3 domain-binding protein 5 (SH3BP5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.4     0.013       2.6     124     217 ..      15     102 ..       4     106 .. 0.68
   2 ?    9.6   0.2    0.0023      0.46      18      64 ..     105     151 ..     100     152 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.013
    PF05276.9 124 nhatqrVkeaeeektrsekvhrekakkleaaeerlkq.lekklkrai....kkSrpYfelkakytkqLeeqkkkvseleakvsqaKsdYstaLrnLEki 217
                   +           +t+  k+ re+ ++le+  +++k  +e++   a+       r Y  +++++ + + e+ ++v+el+ ++ +a  + s +Lr+ ++i
  MMETSP0890-20130614|39845_1  15 AE-----------RTELMKEAREERRALEEKVAKIKSeFEEEQTTAMeitrDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEI 102
                  44...........4444555555555555555555431333333333111135789*************************************987776 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0023
    PF05276.9  18 qatddiNklEveLeearqkfrevlleateklkelskklgkaiekakp 64 
                  +  d+iN++  ++e+  ++f  +l+e+  k+++     +++i+  +p
  MMETSP0890-20130614|39845_1 105 NKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEVSANTIDIERP 151
                  5679*****************************99999999998777 PP

>> PF11713.3  Peptidase C80 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       8.5   1.7e+03      80      96 ..      29      45 ..       4      59 .. 0.63
   2 ?   12.9   0.1   0.00032     0.065      76     146 ..      75     148 ..      61     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 8.5
    PF11713.3 80 keLankiksfrdkfsek 96
                 ++L +k+++++++f+e+
  MMETSP0890-20130614|39845_1 29 RALEEKVAKIKSEFEEE 45
                 34555555555555555 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00032
    PF11713.3  76 gqtakeLankiksfr..dkfsekyksni.spk..kIslvgCslasfdkeesfaekllkalkdegisieVsartsev 146
                  ++t++eL +++  ++   ++  ++k +i ++k  +I+ + +++ +    ++f++ l ++l++   +ieVsa+t  +
  MMETSP0890-20130614|39845_1  75 SHTVQELQDRLDAAEreHSLTLREKDEIiQNKedEINEIKAKMEDM--ASEFGGMLKETLDKMRQRIEVSANTIDI 148
                  5788888888866553223333333333544445999999999988..999*********************9766 PP

>> PF05394.6  Avirulence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00034     0.068      96     151 ..      18      73 ..       7      83 .. 0.88
   2 ?    1.2   0.1      0.66   1.3e+02     193     240 ..      73     120 ..      68     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00034
                  HHH---HHHHHHCTS----TTHHHHCSB--TTS--EEE--TTSTCHHHHHHT-TT- CS
    PF05394.6  96 eeLWekardWrlsrissdealksdfaserdpntefvtplvkpYksvkervanrkDa 151
                   eL ++ar+ r +  ++ +++ks+f++e+++  e++  ++++Yk ++e++++r   
  MMETSP0890-20130614|39845_1  18 TELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITE 73 
                  6999*******************************************999998654 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.66
                  HHHHHHHHHHHH---HHHHHHHHHH-SSEEE---GGGHHHHHHHHHHH CS
    PF05394.6 193 alrdrlkdlykdlkrrglkdllaagePnlithtsaeyvpkikdhlesL 240
                  +l++ +++l+++l + + + +l+  e + i   + +++++ik  +e++
  MMETSP0890-20130614|39845_1  73 ELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDM 120
                  567889999999999999999999999999999999999999999987 PP

>> PF14362.1  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   7.1   0.00024     0.048     135     236 ..       8     109 ..       1     131 [. 0.74
   2 ?   -1.2   0.0       3.3   6.6e+02     108     135 ..     111     137 ..     110     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00024
    PF14362.1 135 aklaaltaeiaalqaeldeaqaevnaaeeevqceleGtggtgvaGkGpvykekkealdaaqaeletlkaqldaaqaeleankrkaaleeeraakvaeeqaan 236
                  ++l+ + ae+++l +e++e +++++++ ++ ++e e +++t  + + + +++ k  ++++  ++++l  ++++ q++l+a++r++ l+ ++++++ ++++++
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDE 109
                  556666777777777777777777777777777777777788999999*******************************99666666665555555544433 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.3
    PF14362.1 108 keIdtelkekqqeeqaaaqaqvaaslsa 135
                  +eI+++++++++e    +++++++  ++
  MMETSP0890-20130614|39845_1 111 NEIKAKMEDMASEFGGMLKETLDK-MRQ 137
                  589999999999999999888888.444 PP

>> PF10158.4  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0   0.00022     0.044      54     104 ..      34      86 ..       5      91 .. 0.80
   2 ?    0.1   0.0       2.8   5.7e+02      63      90 ..     108     136 ..      96     148 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00022
    PF10158.4  54 lvkrik.evdakietllaelrekqkryasyaeql.skvnelsdqlsriqiile 104
                   v++ik e +++ +t+++ +r++ ++y++  eql  ++ els+ ++ +q+ l+
  MMETSP0890-20130614|39845_1  34 KVAKIKsEFEEEQTTAMEITRDMTRQYKGMQEQLvDRITELSHTVQELQDRLD 86 
                  3566663689999********************8468***********99987 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 2.8
    PF10158.4  63 akietllaelrekqkryasya.eqlskvn 90 
                   +i+++ a+++++  ++ +   e+l k++
  MMETSP0890-20130614|39845_1 108 DEINEIKAKMEDMASEFGGMLkETLDKMR 136
                  44444445555554444443213444444 PP

>> PF03036.11  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.4   0.00053      0.11     268     389 ..      12     133 ..       2     140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00053
                  ------------------------------SHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHT----SGGG-----HHHHHHHHHHHHHHHHHHHHHHHT CS
   PF03036.11 268 qklkeaqeklkelWlelsqkepeeqeekaeeeelesrtllllreltqqlqttvlslvssvqglPaavqeqvtevrrsveelqaslskassledvsaealsssrerlaklresLdgvtdyvle 389
                   +l+e+ e +ke   e  + e++ ++ k+e ee    ++ ++r++t+q + + ++lv  +++l ++vqe   ++     e   +l++   + +  + ++++ + +++ +     g+++ +l+
  MMETSP0890-20130614|39845_1  12 MQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKETLD 133
                  5555555555655555566666666889999999999999*****************************99999877778888888888888888889999999988887776666665554 PP

>> PF07851.8  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.8   0.00058      0.12       2      90 ..      31     123 ..      17     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00058
    PF07851.8   2 leeewkelekefkeleethkkykqkl.eeleklqekcasaikkqkkrlkelkkslkklkkk...ltkeekekvekleeeikerkaqlfdmesf 90 
                  lee + +++ ef+e ++t+ +  +++ ++ + +qe+  + i++  ++++el+ +l  ++++   + +e+ e +++ e+ei+e ka++ dm s+
  MMETSP0890-20130614|39845_1  31 LEEKVAKIKSEFEEEQTTAMEITRDMtRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREhslTLREKDEIIQNKEDEINEIKAKMEDMASE 123
                  57889999******9999999887761566779999******999999999999999988766444588999999999********9999865 PP

>> PF02050.11  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.8    0.0028      0.56       6      94 ..      20     104 ..       8     120 .. 0.71
   2 ?    2.8   0.2      0.49        99      16      58 ..     105     129 ..      93     150 .. 0.38

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0028
   PF02050.11   6 aLaeaqqeleeaeekleelqqyreeyrqqlsgsmqglsaaelrnyqafisaldeaiaqqqqeleqaekqveqareewqeanqelkklek 94 
                   ++ea+ e+++ eek+++++ ++ee +   ++     +    r+y+ + ++l ++i +   ++++++ ++++a++e     +e+  + +
  MMETSP0890-20130614|39845_1  20 LMKEAREERRALEEKVAKIKSEFEEEQTTAMEI----TRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQ 104
                  355666666666666666666666665555554....59999******************************99998777666655544 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.49
   PF02050.11  16 eaeekleelqqyreeyrqqlsgsmqglsaaelrnyqafisald 58 
                  ++e +++e+++++e++                   ++f + l+
  MMETSP0890-20130614|39845_1 105 NKEDEINEIKAKMEDM------------------ASEFGGMLK 129
                  2222222222222222..................222222222 PP

>> PF13339.1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.0      0.01       2.1      45     129 ..      54     134 ..       3     138 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.01
    PF13339.1  45 kegneelqealksaekalkklldtlleLreaLleedkksseeeesesakkrkr...aktektsldelweelekleerlkpyrnsvldk 129
                  ++   + + + +++ +++ +l +t+ eL++ L + +       +++s + r +    ++++++++e+  ++e++ +++  + +++ldk
  MMETSP0890-20130614|39845_1  54 RDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAE-------REHSLTLREKdeiIQNKEDEINEIKAKMEDMASEFGGMLKETLDK 134
                  255556666667777777777777777777777322.......222222333334577789*************************99 PP

>> PF05531.7  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.9     0.024       4.8      24      46 ..      64      87 ..       5      89 .. 0.73
   2 ?    8.4   1.5     0.011       2.3      27      49 ..      68      90 ..      54     148 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.024
    PF05531.7 24 qqq.vddvqenlpdvtelnekLda 46
                 q+q vd+++e + +v+el+++Lda
  MMETSP0890-20130614|39845_1 64 QEQlVDRITELSHTVQELQDRLDA 87
                 433256666666677777777766 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.011
    PF05531.7 27 vddvqenlpdvtelnekLdaqsa 49
                 vd+++e + +v+el+++Lda   
  MMETSP0890-20130614|39845_1 68 VDRITELSHTVQELQDRLDAAER 90
                 56666666666666666666432 PP

>> PF05701.6  Plant protein of unknown function (DUF827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  15.1     0.001       0.2     259     386 ..       5     141 ..       3     150 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.001
    PF05701.6 259 esvasvtkELeeakanlekaaeeekslrslvesLkqeLeeekkelee.....lkekekeaeeavssLeaelsrtkselea....keskareelvelslklqqlsseaeeakkeAeeareeve.klkeeaeqtkaalee 386
                  +s+ s++++L e ++ +++a ee ++l + v  +k+e eee++   e     +++ ++++e++ ++   els t +el+      e+++   l e    +q  + e +e k   e++ +e   +lke+ ++ ++++e 
  MMETSP0890-20130614|39845_1   5 SSATSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEitrdmTRQYKGMQEQL-VDRITELSHTVQELQDrldaAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGgMLKETLDKMRQRIEV 141
                  7899**************************************976542222278888888866.666689*********99877778888888888899******************999853788888888777765 PP

>> PF12277.3  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       7.8   1.6e+03       7      23 ..      19      35 ..      15      42 .. 0.72
   2 ?   12.0   0.3   0.00071      0.14      18      34 ..      73      89 ..      72      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 7.8
    PF12277.3  7 eierdIertRaeLaeTv 23
                 e+ ++  ++R+ L e v
  MMETSP0890-20130614|39845_1 19 ELMKEAREERRALEEKV 35
                 56667778888887766 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00071
    PF12277.3 18 eLaeTvdeLaarlsPrr 34
                 eL++Tv+eL++rl+ + 
  MMETSP0890-20130614|39845_1 73 ELSHTVQELQDRLDAAE 89
                 9************9775 PP

>> PF05073.7  Baculovirus P24 capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       1.2   2.5e+02     147     172 ..      28      53 ..       4      63 .. 0.33
   2 ?   11.3   3.2   0.00084      0.17     100     167 ..      61     130 ..      35     146 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 1.2
    PF05073.7 147 reilrseeasllsnlnsllesikslq 172
                  r  l+++ a++ s++++   +  ++ 
  MMETSP0890-20130614|39845_1  28 RRALEEKVAKIKSEFEEEQTTAMEIT 53 
                  22222222222222222222222222 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00084
    PF05073.7 100 vGaqseavdplkdiktqlctlqecleesnvlvnsttesssn..enieslreilrseeasllsnlnslles 167
                   G q++ vd+++++ +++++lq+ l+ ++   + t +++++  +n e+  + ++++ + ++s++ ++l+ 
  MMETSP0890-20130614|39845_1  61 KGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEiiQNKEDEINEIKAKMEDMASEFGGMLKE 130
                  599***********************99877663333333234444455555556666666666555443 PP

>> PF05667.6  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.5    0.0016      0.32     342     463 ..       5     124 ..       2     148 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0016
    PF05667.6 342 ssieeveeeikalkskikeveeeleevkeeneeleeevkikk.rtvelledaeenvakLqalveasserlleLaqqWeahrkpLidelrelkekarekedetkrkleeikklrekikelesel 463
                  ss+  ++ + ++ +  +ke+ ee  + +e+ +++++e +  +  ++e+  d  ++ + +q+ +++   r+ eL++  ++ + +L ++ re++   rek +  ++k +ei++++ k+++++se 
  MMETSP0890-20130614|39845_1   5 SSATSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQtTAMEITRDMTRQYKGMQEQLVD---RITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEF 124
                  55666667777777778888888888888888888887654414567888888888888777664...7778888888888888888888888888888888888888888888888888774 PP

>> PF00672.20  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.8     0.013       2.6      23      66 ..      67     122 ..      52     124 .. 0.81
   2 ?    2.1   0.0         1     2e+02      55      69 ..     126     140 ..     126     141 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.013
                  THHHHHHHHHHHHHHH---TT.............S..TTT.SS----HHHHCCCHHH CS
   PF00672.20  23 ilrPlrrLaeaarriaeGdld.............drvpvdgrdEigeLarafnamle 66 
                  ++ ++ +L+ ++++++++ ld             d++ +   dEi e+ + +++m+ 
  MMETSP0890-20130614|39845_1  67 LVDRITELSHTVQELQDR-LDaaerehsltlrekDEIIQNKEDEINEIKAKMEDMAS 122
                  677889999999999975.444466666778877777888*************9985 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 1
                  --HHHHCCCHHHHCC CS
   PF00672.20  55 geLarafnamlerLr 69 
                  g+L ++++ m++r++
  MMETSP0890-20130614|39845_1 126 GMLKETLDKMRQRIE 140
                  899*********986 PP

>> PF04350.8  Pilus assembly protein, PilO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.8     0.051        10       4      46 ..      31      74 ..      28      86 .. 0.85
   2 ?    8.0   0.2     0.011       2.3       4      45 ..      89     130 ..      83     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.051
    PF04350.8  4 aeakeeelkkefeekkekaanLe.alkkqleeleeefeellkqL 46
                  e+k +++k+efee+++ a ++   + +q++ ++e++   +++L
  MMETSP0890-20130614|39845_1 31 LEEKVAKIKSEFEEEQTTAMEITrDMTRQYKGMQEQLVDRITEL 74
                 6788999************999725999********99988888 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.011
    PF04350.8   4 aeakeeelkkefeekkekaanLealkkqleeleeefeellkq 45 
                  ++++  +l+++ e  ++k  +++++k+++e++ +ef+ +lk+
  MMETSP0890-20130614|39845_1  89 EREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKE 130
                  44556688888889999999*******************986 PP

>> PF05852.6  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   9.1    0.0019      0.38      36     124 ..       8      97 ..       3     114 .. 0.72
   2 ?    1.4   0.5       1.1   2.3e+02      67      99 ..     100     133 ..      86     150 .. 0.40

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0019
    PF05852.6  36 fkkQfektkkslrsleklkkekelkekvssleteieekkkelelLkk.fdrkklerleaLtdrveelkeelefelerleaeegeeeelss 124
                  +  Q + +++     e+++++++l+ekv+++++e+ee+++    + + + r+     e+L+dr++el+ ++++  +rl+a+e e+     
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRdMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLR 97 
                  5567777777777888899999**************999877766665888888889**********98887777777644333332222 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 1.1
    PF05852.6  67 eteieekkkelelLkk.fdrkklerleaLtdrve 99 
                  +  i++k+ e++ +k+ ++    e    L++ ++
  MMETSP0890-20130614|39845_1 100 DEIIQNKEDEINEIKAkMEDMASEFGGMLKETLD 133
                  3333333333333333222222222222222222 PP

>> PF02403.17  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.1     0.058        12      63      97 ..      21      56 ..       4      60 .. 0.68
   2 ?   10.7   4.7    0.0018      0.37      20      97 ..      60     139 ..      50     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.058
                 TT...HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   PF02403.17 63 kkkk.edaeeliaevkelkeelkaleaelkeleael 97
                 +k+  e++ +l ++v+++k e+++ + +  e++ ++
  MMETSP0890-20130614|39845_1 21 MKEArEERRALEEKVAKIKSEFEEEQTTAMEITRDM 56
                 333337788888888888888888877777777665 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0018
                  H-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT...HHCCCHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
   PF02403.17  20 kRgedkedvdelleldeerrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelka.leaelkeleael 97 
                   +g ++++vd++ el   ++elq +l+ + +e+    +e  ++ ++k  +++e++a++++++ e+   l+++l+++++++
  MMETSP0890-20130614|39845_1  60 YKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKeDEINEIKAKMEDMASEFGGmLKETLDKMRQRI 139
                  5778999**************************99999999998888778999999999998887542566666666655 PP

>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  11.8    0.0033      0.66      64     161 ..      21     120 ..       2     124 .. 0.81
   2 ?    8.8   5.6     0.005         1      63     150 ..      56     145 ..      53     150 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0033
   PF03962.10  64 kkklkteleklkkeleelkqrikelqaeieke..kkkreeteereelleelkeleeelkklkkeleklakldpekveklkeetevakesanrwtDnifll 161
                  +k+ ++e ++l+++++++k++ +e q+   +    ++r+ +  +e+l+++++el++++++l+  l ++++  + ++++++e +++  +++n ++  ++ +
  MMETSP0890-20130614|39845_1  21 MKEAREERRALEEKVAKIKSEFEEEQTTAMEItrDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDM 120
                  4577888888888888888888877766554423667777799999********************9999999999999999999999999988777655 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.005
   PF03962.10  63 akkklkteleklkkeleelkqrikelqaeiekekkkreet.eereelleelkeleeelkklkkele.klakldpekveklkeetevakes 150
                  ++++ k   e+l  +++el+ +++elq+++++++++ + t +e+ e ++++++  +e+k++ ++++ ++  + +e+++k+++ +ev  + 
  MMETSP0890-20130614|39845_1  56 MTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTlREKDEIIQNKEDEINEIKAKMEDMAsEFGGMLKETLDKMRQRIEVSANT 145
                  566677777888888999999999999999888777777766666666655555555555555555577777788888888888876655 PP

>> PF04899.7  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.1    0.0058       1.2      27      66 ..      39      86 ..       8      90 .. 0.71
   2 ?   -0.7   0.0       6.2   1.2e+03      32      60 ..     112     141 ..     102     147 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0058
    PF04899.7 27 esafaelqrmfeltqrena........aLseqvtgLsqQVesLseqvr 66
                 +s f+e q+      r+ +        +L  ++t+Ls+ V++L ++++
  MMETSP0890-20130614|39845_1 39 KSEFEEEQTTAMEITRDMTrqykgmqeQLVDRITELSHTVQELQDRLD 86
                 4555555554444444444455557779***************99875 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 6.2
    PF04899.7  32 elqrmfeltqrena.aLseqvtgLsqQVes 60 
                  e+++ +e ++ e + +L+e  +++ q +e 
  MMETSP0890-20130614|39845_1 112 EIKAKMEDMASEFGgMLKETLDKMRQRIEV 141
                  555555555555444888888888887775 PP

>> PF12536.3  Patatin phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.0      0.06        12       2      39 ..      13      50 ..      12      68 .. 0.77
   2 ?    8.5   0.7     0.009       1.8      13      44 ..      67      99 ..      62     124 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.06
    PF12536.3  2 qYssRtrlntdrlkqiqrlrralrelleklpeelrkdp 39
                 q ++Rt+l+ ++++++++l++ ++++ ++ +ee+ +  
  MMETSP0890-20130614|39845_1 13 QLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAM 50
                 66889999999999999999999999999988887733 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.009
    PF12536.3 13 rlkqiqrlrralrelleklpeelrk.dpdvrel 44
                  + +i +l+++++el ++l++++r+ +  +re 
  MMETSP0890-20130614|39845_1 67 LVDRITELSHTVQELQDRLDAAEREhSLTLREK 99
                 567999******************944455555 PP

>> PF05478.6  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5    0.0054       1.1     191     379 ..      46     144 ..       5     150 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0054
    PF05478.6 191 ndtpkeidkvlaqnykelkdkvskdLdeagenlgkrikdelksevlpvLeevvelgqvlkemkeaLesvsktvkelkeegsqlesglssvrrrlnellaklCktqeCakilsslsilaldadfsqlpdvteilenleevveadlskvvqeglstleeipskvkeqtssvvqevkkaldslgteiksvae 379
                  ++t++ei + +  +yk +++++ + ++                                                                                          +l+   ++l d  +  e+ + ++  + ++++q+  ++++ei+ k++   s+    +k++ld+++++i+  a+
  MMETSP0890-20130614|39845_1  46 QTTAMEITRDMTRQYKGMQEQLVDRIT------------------------------------------------------------------------------------------ELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEVSAN 144
                  334444444444445555555444333..........................................................................................333444444444444444444444444455555555555555554433333333444444444444444444 PP

>> PF09824.4  ArsR transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00098       0.2      83     150 ..       8      76 ..       2      87 .. 0.83
   2 ?    0.7   0.2       1.3   2.6e+02     101     116 ..     105     120 ..      73     147 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00098
    PF09824.4  83 anfqcsledlsdiiavafksdeelkelveeieaeveegntslsdlsrklnkspl.fikaiakRssklev 150
                   ++q+ l + +++++ a ++   l+e+v +i++e ee++t   +++r++ ++   +   ++ R+++l+ 
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKgMQEQLVDRITELSH 76 
                  5789999999**************************************998754144567777777765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 1.3
    PF09824.4 101 ksdeelkelveeieae 116
                  ++++e++e++ ++e++
  MMETSP0890-20130614|39845_1 105 NKEDEINEIKAKMEDM 120
                  2333333333333332 PP

>> PF13758.1  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.0    0.0012      0.24       4      98 ..       7      92 ..       2      93 .. 0.76
   2 ?    1.0   0.2       1.6   3.2e+02      16      42 ..     105     124 ..      90     147 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0012
    PF13758.1  4 laklreseaeydelkeeleelkeeddatkedllrirrdfegslvnekeikeilgekqgvertkeqvvdlisrRiDyVkenietlekrleaaEkkl 98
                  ++l+ + ae +el +e +e    + a +e++++i+ +fe ++ ++ ei   +       r+ + + +++  Ri +  + ++ l+ rl+aaE+++
  MMETSP0890-20130614|39845_1  7 ATSLQMQLAERTELMKEAREE---RRALEEKVAKIKSEFEEEQTTAMEITRDMT------RQYKGMQEQLVDRITELSHTVQELQDRLDAAEREH 92
                 455666666666666665554...6789999***************99987654......555566666666999****************9875 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 1.6
    PF13758.1  16 elkeeleelkeeddatkedllrirrdf 42 
                  + ++e++e+       k+++  ++ +f
  MMETSP0890-20130614|39845_1 105 NKEDEINEI-------KAKMEDMASEF 124
                  222333333.......22233333344 PP

>> PF02601.10  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.7    0.0061       1.2     158     266 ..      26     135 ..       2     151 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0061
   PF02601.10 158 rlsralksklekekaklnllknrltlksrrkplskleqeeerleelkerleksleqllqskesqleklnaslaknnpdyklnkklekitllkneldsels...........saesklril 266
                  + +ral++k+ k k ++++ +++  +  r+  +++++ ++e+l+++ ++l++++++l ++  ++ +  ++sl ++++d+++++k  +i+  k++++ ++s           +       +
  MMETSP0890-20130614|39845_1  26 EERRALEEKVAKIKSEFEEEQTTAMEITRD-MTRQYKGMQEQLVDRITELSHTVQELQDRLDAAER--EHSLTLREKDEIIQNKEDEINEIKAKMEDMASefggmlketldK-------M 135
                  333444444444455554444444444433.45677777777777777777755555443333322..36788888888888888888888877777777555533333222.......2 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.5     0.084        17     204     269 ..      13      80 ..       3      83 .. 0.51
   2 ?   10.6   5.7   0.00073      0.15     157     244 ..      59     144 ..      51     150 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.084
    PF08317.6 204 eecdseel.eklreeLssleekieekrkkleeleeelqelkkkiealkekks.elleeiaeaekilee 269
                  + ++++el +++ree ++leek+++ +++ ee ++   e++ +++ + + ++ +l ++i+e+ + ++e
  MMETSP0890-20130614|39845_1  13 QLAERTELmKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQeQLVDRITELSHTVQE 80 
                  33333333145666666666666666666666666666666666555544441344555555554444 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00073
    PF08317.6 157 nleelkedeellnkklelinsilpklrekkealkeelasLrqlkdeleecdseeleklreeLssleekieek.rkkleeleeelqelkk 244
                  +++++   +e+l +++++++ ++++l+++++a ++e+    + kde+ +  ++e+++++ +++++ ++     ++ l +++++++ +++
  MMETSP0890-20130614|39845_1  59 QYKGM---QEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMlKETLDKMRQRIEVSAN 144
                  44444...5789999*******************999998888999999999**********999999983213344444444444333 PP

>> PF06428.6  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.2      0.78   1.6e+02       4      72 ..      22      83 ..      19      90 .. 0.52
   2 ?    9.4   1.4    0.0039      0.78      48      92 ..      84     128 ..      76     140 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF06428.6  4 aeekkkreeaekekkkleqEveeLTasLFeEAnkmVanArkekeaveeknekleeqLkekelllevlqa 72
                 +e +++r+++e++++k++ E ee  +   e    m        ++++  +e+l + + e    ++ lq+
  MMETSP0890-20130614|39845_1 22 KEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMT-------RQYKGMQEQLVDRITELSHTVQELQD 83
                 566666777777777777776654333333333333.......33445555555555555555555554 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0039
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------XX CS
    PF06428.6  48 aveeknekleeqLkekelllevlqaqlkeLKelleslekekngss 92 
                   +++ +++   +L+ek+ ++++ +++++e K+ +e++ +e+ g+ 
  MMETSP0890-20130614|39845_1  84 RLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGML 128
                  555556666778*************************99998776 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.5     0.087        18      21      58 ..       8      45 ..       6      58 .. 0.86
   2 ?    8.6   4.6    0.0098         2      14      71 ..      65     137 ..      50     138 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.087
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
    PF06005.7 21 alLqmeieeLkeeneqlkeeneeLeeenkklkeereaw 58
                 + Lqm ++e  e  ++++ee+++Lee+  k k+e e+ 
  MMETSP0890-20130614|39845_1  8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEE 45
                 689*****9999999999**************776554 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0098
                  HHHHHHHHHHHHHHHHHHHHHHHHH...............HHHHHHHHHHHHHHHHH---TTHHHHH------ CS
    PF06005.7  14 qqAvdtialLqmeieeLkeeneqlk...............eeneeLeeenkklkeereawqerlralLgklee 71 
                  +q+vd+i+ L   ++eL++  ++++               ++++e++e   k+ + ++++  +l++ L k+++
  MMETSP0890-20130614|39845_1  65 EQLVDRITELSHTVQELQDRLDAAErehsltlrekdeiiqNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQ 137
                  5899999999999999999877666878888888888887777888888888888888999999999999876 PP

>> PF00517.12  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       2.1   4.1e+02     107     132 ..      25      50 ..       3      57 .. 0.61
   2 ?    9.6   0.7    0.0027      0.54      22      60 ..      52      90 ..      43     100 .. 0.82
   3 ?   -1.8   0.0       8.3   1.7e+03     107     125 ..     100     118 ..      92     137 .. 0.58

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 2.1
   PF00517.12 107 edqvsqleqkileiieeaqnqqeknk 132
                   ++ + le+k  +i +e++++q   +
  MMETSP0890-20130614|39845_1  25 REERRALEEKVAKIKSEFEEEQTTAM 50 
                  34445566666666666666665555 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0027
   PF00517.12 22 nqtklleaqeqidkllelringlenvVlvlgarVtalek 60
                     ++++ + ++++l +ri +l ++V +l++r+ a e+
  MMETSP0890-20130614|39845_1 52 ITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAER 90
                 555677777888999999****************99886 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 8.3
   PF00517.12 107 edqvsqleqkileiieeaq 125
                  ++ +++ e +i ei   ++
  MMETSP0890-20130614|39845_1 100 DEIIQNKEDEINEIKAKME 118
                  4444444444444444433 PP

>> PF07928.7  Vps54-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2      0.28        56     107     121 ..      33      47 ..       5      75 .. 0.56
   2 ?    7.4   0.7     0.019       3.9      86     130 ..      77     120 ..      66     124 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.28
    PF07928.7 107 eefdkvkkdykehqn 121
                  e++ k+k++++e+q 
  MMETSP0890-20130614|39845_1  33 EKVAKIKSEFEEEQT 47 
                  444444444444443 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.019
    PF07928.7  86 lipilrehlerklqekqsslleefdkvkkdykehqneisaklvsi 130
                  +++ l+++l+++ ++++s  l+e d++ ++ ++++nei+ak+ ++
  MMETSP0890-20130614|39845_1  77 TVQELQDRLDAA-EREHSLTLREKDEIIQNKEDEINEIKAKMEDM 120
                  566777788876.8889999*********************9765 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.5      0.13        27      27     101 ..      54     137 ..      16     140 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.13
                  CCHSSSHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH.......HHHHHHHHTTSTTHHHHHHHHHHHHHHHHH.HHHHHHHHHH CS
   PF00435.16  27 edlgkdleevqallk.khkaleaelaaqqervealn.......elaeklideghsaseeieerleelnerWee.Llelaaerkq 101
                  +d+ +++ ++q++l  + ++l +++++ q+r++a +         ++++i++++++  ei++++e++ + +   L+e++++++q
  MMETSP0890-20130614|39845_1  54 RDMTRQYKGMQEQLVdRITELSHTVQELQDRLDAAErehsltlREKDEIIQNKEDEINEIKAKMEDMASEFGGmLKETLDKMRQ 137
                  444555555554443466666666666666666666666666688899999999999999999999999997614555555555 PP

>> PF01496.14  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.3    0.0081       1.6      20     127 ..       8     115 ..       3     150 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0081
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
   PF01496.14  20 safqrkfvnevrrldeverklrkleseikkakielkdekekpdvpesk.evedleeeleeleeelkeveeslesLekelneleelrnvlreekefleenkveelrelss 127
                  +++q++  +    ++e   + r le+++ k+k+e++ e++ + ++  +    +++   e+l  ++ e+  + ++L+ +l+  e + ++   ek+++ +nk++e++e++ 
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFE-EEQTTAMEITRdMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKA 115
                  567777777888888889999999999999999999.444444444442445666666777777777777777777777777766666555555555555566664433 PP

>> PF05957.8  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.0      0.31        62      11      65 ..      14      67 ..       4      73 .. 0.51
   2 ?    3.2   0.3      0.52   1.1e+02       2      35 ..      66      99 ..      65     105 .. 0.85
   3 ?    9.1   0.1    0.0074       1.5       4      40 ..     107     143 ..     104     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.31
    PF05957.8 11 ladleellksaadeageeaeelReraeealerarerlrdaedavrerakeaaeaa 65
                 la+  el+k+a +e ++ +ee  ++++++ e+ + ++ + ++++ +++k + e+ 
  MMETSP0890-20130614|39845_1 14 LAERTELMKEAREE-RRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQL 67
                 44555555554443.3334444455555555555555555555555555555554 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.52
    PF05957.8  2 eleaeletlladleellksaadeageeaeelRer 35
                 +l + +++l ++++el     +  +e+  +lRe+
  MMETSP0890-20130614|39845_1 66 QLVDRITELSHTVQELQDRLDAAEREHSLTLREK 99
                 6778899999999999999999999999999987 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0074
    PF05957.8   4 eaeletlladleellksaadeageeaeelReraeeal 40 
                  e+e++++ a++e+++++ +   +e+++++R+r+e ++
  MMETSP0890-20130614|39845_1 107 EDEINEIKAKMEDMASEFGGMLKETLDKMRQRIEVSA 143
                  6899999999999999999999999999999998765 PP

>> PF05192.13  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.4    0.0097         2      92     175 ..      28     124 ..       5     148 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0097
                  ----TTT---HHHHH....HHHHHHHHH....----..--......--.--HHHHHHHHCCB-SS--SSS-----B--..............HHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxx RF
   PF05192.13  92 grasprdllalkstl....kalpelkklesselssh.ellaallasln.pleellkliedaideepplarrdgglirp..............ilalekeilqel 175
                  +ra  ++++++ks +    + ++e+ + ++++++ + e+l + + +l+ +++el+++++ a  e++   r+++++i++              +        +e+
  MMETSP0890-20130614|39845_1  28 RRALEEKVAKIKSEFeeeqTTAMEITRDMTRQYKGMqEQLVDRITELShTVQELQDRLDAAEREHSLTLREKDEIIQNkedeineikakmedM-------ASEF 124
                  4555677777888887766667777666888888888666666666775689*********99998888888889966667666644443332.......2222 PP

>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.4    0.0096       1.9      57     164 ..       9     117 ..       3     124 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0096
    PF03234.9  57 inkkllervdkllselkeeeelssekvlkklneeadkedkasveeeeeeqpkynemledLldqvkdevdekk..aaklieelkkhrkklkkeekelekkleelekeekkk 164
                  + + +l++  +l++e++ee  + +ekv+k  ++e+++e+++  e + + + +y+ m e+L+d++ +   + +  ++ l  + ++h   l+++++ +++k++e+++ ++k+
  MMETSP0890-20130614|39845_1   9 SLQMQLAERTELMKEAREERRALEEKVAKI-KSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQelQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKM 117
                  455666777788888888876666777665.556656666777888888999************6555554444555555556777788888888888888888777664 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   9.1      0.37        74      16      96 ..      10      84 ..       6      89 .. 0.51
   2 ?    7.9   9.4     0.013       2.6      21      97 ..      44     124 ..      41     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.37
    PF13863.1 16 ldakreeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekkaeeekkekkekeeeikklkaqleelkae 96
                 l+++ +e  ++++e  e++++le+k +++++++++ +    +           +++ k +++++   i +l+++++el+ +
  MMETSP0890-20130614|39845_1 10 LQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDM------TRQYKGMQEQLVDRITELSHTVQELQDR 84
                 55666666666666666666666666666665554444433333333......3333344445555555555555555544 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.013
    PF13863.1  21 eeierkeeelkereeelekkqeelqeslikfnkflkdneakreraekk....aeeekkekkekeeeikklkaqleelkaei 97 
                  ee    +e      ++++ +qe+l +++++    +++ +++ ++ae++     +e+ +  ++ke ei+++ka++e++ +e 
  MMETSP0890-20130614|39845_1  44 EEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREhsltLREKDEIIQNKEDEINEIKAKMEDMASEF 124
                  666777888888899*******************************9633336788889999**************99886 PP

>> PF13270.1  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.3    0.0008      0.16      36      89 ..      26      79 ..      16      80 .. 0.85
   2 ?    1.1   0.6       1.9   3.8e+02      51      77 ..      93     120 ..      76     147 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0008
    PF13270.1 36 ekvReqQEklArlhfeldveeeelseeeeqkktkadenlekLlskLeqLsssie 89
                 e+ R + Ek+A+++ e+++e++++ e   + +++ +   e+L+ ++ +Ls +++
  MMETSP0890-20130614|39845_1 26 EERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQ 79
                 5557889***************9999977777777777789**********998 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 1.9
    PF13270.1  51 eldveee.elseeeeqkktkadenlekL 77 
                  +l  +e+ e  +++e++ ++ ++ +e +
  MMETSP0890-20130614|39845_1  93 SLTLREKdEIIQNKEDEINEIKAKMEDM 120
                  3333222022222334444444444433 PP

>> PF07106.8  Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.3     0.041       8.3      68     160 ..      14     113 ..       6     122 .. 0.70
   2 ?    7.0   4.4     0.017       3.5      76     150 ..      66     135 ..      61     147 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.041
    PF07106.8  68 llsdeelnkldae.ieelreevqelkqeiselekelkkLtselt......teelleeiqelkkeveeieekLeslkeankevtkeeiekvkkeykklkke 160
                  l++  el+k   e   +l+e+v ++k+e++e +++  ++t+++t      +e+l + i el + v+e +++L++ +++   +  e+ e ++++++++ + 
  MMETSP0890-20130614|39845_1  14 LAERTELMKEAREeRRALEEKVAKIKSEFEEEQTTAMEITRDMTrqykgmQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEI 113
                  44444544433333677777777777777777777777777776333333689999*******************9999988888888888777766544 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.017
    PF07106.8  76 kldaeieelreevqelkqeiselekelkkLtseltteelleeiqelkkeveeieekLeslkeankevtkeeiekv 150
                  +l ++i+el+  vqel++    +e e     ++lt  e  e iq+ + e++ei++k+e++ ++   + ke  +k+
  MMETSP0890-20130614|39845_1  66 QLVDRITELSHTVQELQDRLDAAERE-----HSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGGMLKETLDKM 135
                  33333444444444444444433333.....45667777777888888888888888877776666555555554 PP

>> PF09177.6  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.3      0.13        25      10      96 ..      31     120 ..       4     121 .. 0.81
   2 ?    2.5   2.4      0.87   1.8e+02       9      65 ..      80     142 ..      79     147 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.13
    PF09177.6  10 vqksidkleslyrsweelrsdst..sskelkeltkeLenalesiewdledLeeavsvveknpekf.glseeeisrRkqfvaeireeikev 96 
                  ++++++k++s +++ ++   + t   +++ k  +++L + + +++ ++++L++  +++e++++   + ++e i+++++ ++ei+ + +++
  MMETSP0890-20130614|39845_1  31 LEEKVAKIKSEFEEEQTTAMEITrdMTRQYKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTlREKDEIIQNKEDEINEIKAKMEDM 120
                  45566666666666666555555667788999999*************************987744667778999999999999999887 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.87
    PF09177.6   9 evqksidkleslyrsweelrsdst..sskelkeltkeLenales....iewdledLeeavsvv 65 
                  e+q+ +d++e  ++ + +++ +    +++e++e + ++e++ ++    ++++l+ + + ++v+
  MMETSP0890-20130614|39845_1  80 ELQDRLDAAEREHSLTLREKDEIIqnKEDEINEIKAKMEDMASEfggmLKETLDKMRQRIEVS 142
                  566666666665555555555544454555555555555554432222677777777777775 PP

>> PF10211.4  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.9    0.0047      0.95     123     188 ..       8      73 ..       3      74 .. 0.90
   2 ?    7.3   5.3     0.017       3.3     125     186 ..      60     124 ..      54     140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0047
    PF10211.4 123 selekeikkleeekeeLekevkelekkleeiekreeeereeeekkhadeiaflkkqnqqlkseleq 188
                  + l+ + ++  e ++e ++e++ le+k+++i++++eee+++  ++ +d + ++k  ++ql +++++
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITE 73 
                  5677788888899999999*****************************************999876 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.017
    PF10211.4 125 lekeikkleeekeeLekevkelekkleeiekreeeereeee...kkhadeiaflkkqnqqlksel 186
                  ++   ++l ++++eL++ v+el+ +l+++e++ + + +e+    ++ +dei+ +k++ + + se+
  MMETSP0890-20130614|39845_1  60 YKGMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDeiiQNKEDEINEIKAKMEDMASEF 124
                  55566889999999999999999999999998875544444111566789999999888877765 PP

>> PF08702.5  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.4     0.011       2.2      39     117 ..       8      89 ..       2      99 .. 0.80
   2 ?    5.6   1.9     0.071        14      23      83 ..      63     124 ..      62     151 .. 0.45

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.011
                  CCHCCCCHHHHCHCCHHHHHHHHHHHHHHCCCHCHCCHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF08702.5  39 eklenlLeqlanktkeieelvksikeslkekqkqakdndniesavskslekki...ililekkilaqesqirvLqevlrsne 117
                   +l+ +L++ ++  ke++e  ++++e++++ +++ ++++ + ++++ ++ +++     +l  +i++  +++++Lq+ l++ e
  MMETSP0890-20130614|39845_1   8 TSLQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYkgmQEQLVDRITELSHTVQELQDRLDAAE 89 
                  5678888888888888888899999988888888888888888888888888876667777888888899999999888765 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.071
                  HHHCHCCCCCCCCHHHCCHCCCCHHHHCHCC....HHHHHHHHHHHHHHCCCHCHCCHHHHHHHH CS
    PF08702.5  23 iqdlldkyekdvdkkieklenlLeqlanktk....eieelvksikeslkekqkqakdndniesav 83 
                  +q+ l +  +++++++++l+++L+ ++++++    e +e++++ +++++e +++ +d     s+ 
  MMETSP0890-20130614|39845_1  63 MQEQLVDRITELSHTVQELQDRLDAAEREHSltlrEKDEIIQNKEDEINEIKAKMEDMA---SEF 124
                  66666677777777788888888777777652111223333333333333333333222...222 PP

>> PF12329.3  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.9       0.2        40      24      62 ..      10      48 ..       5      59 .. 0.77
   2 ?    7.0   0.1     0.022       4.5      37      62 ..      66      91 ..      57      94 .. 0.61
   3 ?    3.0   4.9       0.4        80       6      27 ..      95     116 ..      91     147 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.2
    PF12329.3 24 LskkelkhnntikkLrkknkelekeieelkkklekleke 62
                 L+ + ++ ++ +k+ r++ ++le+++++ k++ e+ ++ 
  MMETSP0890-20130614|39845_1 10 LQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTT 48
                 677778888899999999999999999999888887665 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.022
    PF12329.3 37 kLrkknkelekeieelkkklekleke 62
                 +L   + el  +++el+++l+  e+e
  MMETSP0890-20130614|39845_1 66 QLVDRITELSHTVQELQDRLDAAERE 91
                 44455566666666666666666655 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.4
    PF12329.3   6 klkeKdeqIaqLmeEgekLskk 27 
                  +l+eKde+I++   E+ +  +k
  MMETSP0890-20130614|39845_1  95 TLREKDEIIQNKEDEINEIKAK 116
                  5899999999999998877665 PP

>> PF12732.2  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.6      0.82   1.7e+02      26      61 ..      19      46 ..       4      56 .. 0.54
   2 ?    6.8   3.1     0.038       7.6      29      72 ..      54     121 ..      47     147 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.82
    PF12732.2 26 etReelkkkaddlkekaqelltearekvkekaesla 61
                 e+ +e++++ ++l ek+ +        +k+++e+  
  MMETSP0890-20130614|39845_1 19 ELMKEAREERRALEEKVAK--------IKSEFEEEQ 46
                 3333444444444444333........666666633 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.038
    PF12732.2  29 eelkkkaddlkekaqelltearekvkekaes.ladk.......................vkekakelk 72 
                  ++++++++ ++e++ +  te +++v+e  ++ +a +                       +k k+++++
  MMETSP0890-20130614|39845_1  54 RDMTRQYKGMQEQLVDRITELSHTVQELQDRlDAAErehsltlrekdeiiqnkedeineIKAKMEDMA 121
                  68888999999999999999888866666665333335555555555555555555555555555554 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  14.3      0.43        87      79     166 ..      10     123 ..       2     151 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.43
    PF04156.9  79 lqeelsesesqlseleeeleqleerlaeleseledleedlellq........eelksleerlesleesikelakeirelr..................eeisdlkeevqelrse 166
                  lq  l+e ++ ++e+ ee  +lee++a+ +se+e+++    ++         ++ ++l +r+ +l++ ++el++++   +                  +ei + k++++++ se
  MMETSP0890-20130614|39845_1  10 LQMQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITrdmtrqykGMQEQLVDRITELSHTVQELQDRLDAAErehsltlrekdeiiqnkeDEINEIKAKMEDMASE 123
                  445556666666666666666666666666666666666666666666666755555555555555555555555555555555333555555555555555555555555555 PP

>> PF11827.3  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.8     0.033       6.7       8     129 ..      10     131 ..       4     146 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.033
    PF11827.3   8 ascqkekkkseaeeteeeek.kkkeeee...ekvkekekedealkevlsaYlelkdaLvkddakkakaaakklaealeavdak.klskeeakelkktaekakekdiekqReaFkkLSeeviellkka 129
                  +++q +++++ ++e++ee+   +++ ++   e ++e++ + e +++++++Y  ++++Lv+    + +++ ++l++ l+a++ + +l+  e+ e+ + +    e +i++  ++ +++ +e+  +lk++
  MMETSP0890-20130614|39845_1  10 LQMQLAERTELMKEAREERRaLEEKVAKiksEFEEEQTTAMEITRDMTRQYKGMQEQLVDRI-TELSHTVQELQDRLDAAEREhSLTLREKDEIIQNK----EDEINEIKAKMEDMASEFGGMLKET 131
                  5666666666664443332202222222553666777777888999*************876.77788888899999888877344555555555544....4457777777777777766666665 PP

>> PF07074.7  Translocon-associated protein, gamma subunit (TRAP-gamma)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       6.7   1.4e+03      93     117 ..      14      37 ..       6      52 .. 0.55
   2 ?    8.5   1.2    0.0059       1.2      62     121 ..      56     116 ..      47     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 6.7
    PF07074.7  93 laddkklsrkekderilwkknevad 117
                  la+   l ++ ++er    +++va 
  MMETSP0890-20130614|39845_1  14 LAERTELMKEAREERRAL-EEKVAK 37 
                  555555555555554322.233333 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0059
    PF07074.7  62 lalayknvkfllkhkiaikreeavtrevnrkl...addkklsrkekderilwkknevadyeat 121
                  ++  yk ++ +l ++i+   + +  +e++ +l     ++ l+ +ekde+i  k++e+ ++ a 
  MMETSP0890-20130614|39845_1  56 MTRQYKGMQEQLVDRITELSH-T-VQELQDRLdaaEREHSLTLREKDEIIQNKEDEINEIKAK 116
                  566788888888888876544.3.46777777543567789****************998875 PP

>> PF03955.9  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.1      0.63   1.3e+02      48      90 ..      40      83 ..       4      91 .. 0.48
   2 ?    7.8   0.7      0.02       4.1      45     107 ..      77     140 ..      72     142 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.63
    PF03955.9 48 sstldtaaaaaastsaaaatarslaee.veslselkskvsalee 90
                 s+  + ++ a ++t+    + + ++e+ v+ ++el++ v++l++
  MMETSP0890-20130614|39845_1 40 SEFEEEQTTAMEITRDMTRQYKGMQEQlVDRITELSHTVQELQD 83
                 22333333333333333333333333312233333333333333 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.02
    PF03955.9  45 tvssstldtaaaaaastsaaaatarslaeeveslselkskvsal.eekltvllaeLeelkqqla 107
                  tv + + + +aa+++  +   ++ + ++ + + ++e+k+k++ + +e   +l+++L++++q+++
  MMETSP0890-20130614|39845_1  77 TVQELQDRLDAAEREHSLTLREKDEIIQNKEDEINEIKAKMEDMaSEFGGMLKETLDKMRQRIE 140
                  555555556666666656666667777888899********99955566789999****99986 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  13.7      0.48        96      32     119 ..      15     118 ..       5     147 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.48
    PF03938.9  32 pkykelqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlqaelqaeqqe.................vlqklidkia 119
                  ++  el+++  ee  ++++++++ k e+++eq    +    ++ +  k ++e+l  +  el +  q+lq++l a++ e                 +++++  k++
  MMETSP0890-20130614|39845_1  15 AERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQ-YKGMQEQLVDRITELSHTVQELQDRLDAAEREhsltlrekdeiiqnkedEINEIKAKME 118
                  556667777777777777777777777766666666655566554.77888888888888888888888887777777777777666655433333333333333 PP

>> PF08432.5  Fungal protein of unknown function (DUF1742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.9      0.13        25      57     142 ..      21     106 ..      10     147 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.13
    PF08432.5  57 aeeakkkkkelkeeiekvkkeyeekqkakkekkkkkkekdkekekkkdkkddksekekekeeeekaeelkkseeeaastldel.kpr 142
                   +ea++++ +l+e+++k+k e+ee+q+ + e++ ++  + k   +++  +  ++ +++ +e +++ ++++++++ +  + de+ +++
  MMETSP0890-20130614|39845_1  21 MKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYK-GMQEQLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIiQNK 106
                  578999999******************99999887755555.333333333444444444444444444444444444333333222 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   2.1      0.25        51      48     101 ..      18      69 ..       5      71 .. 0.66
   2 ?    9.4   4.8     0.005         1       4      72 ..      66     139 ..      62     150 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.25
   PF00804.20  48 eeltaeikklankirskLksleqsieqeegqnrssadlrirktqhstlsrkFke 101
                   el++e +   ++++ k+ +++++   ee+q       r  + q++ ++ ++++
  MMETSP0890-20130614|39845_1  18 TELMKEAREERRALEEKVAKIKSE--FEEEQTTAMEITRDMTRQYKGMQEQLVD 69 
                  566777777777777777777777..4666666666667777777777766665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.005
   PF00804.20   4 effeqveeIrgeiekisekveelkrlhsrilaspdpd.kqtkeeleeltaeikklankirskLks....leqsi 72 
                  + ++++ e ++ ++++++ ++  +r+hs  l ++d+  + +++e++e+ a+  ++a++  + Lk+    + q i
  MMETSP0890-20130614|39845_1  66 QLVDRITELSHTVQELQDRLDAAEREHSLTLREKDEIiQNKEDEINEIKAKMEDMASEFGGMLKEtldkMRQRI 139
                  55677788888888888888888888888888888336678888888888888888777777775533344444 PP

>> PF00611.18  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4      0.23        46      47      86 ..      11      51 ..       4      56 .. 0.81
   2 ?    7.9   2.8     0.015         3       3      90 ..      52     144 ..      50     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.23
   PF00611.18 47 e.klakkylkkkkksseegslkkaweklleeteklakqhlk 86
                 + +la++++  k++ +e++ l++   k+++e+e++    ++
  MMETSP0890-20130614|39845_1 11 QmQLAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAME 51
                 547899999999999999*************9998776655 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.015
   PF00611.18   3 fwselkdgfkvllkrlkqgiklledlakflkeRa.eiEkeYakkLeklakkylkkkkkssee....gslkkaweklleeteklakqhlklaen 90 
                  +  + + ++k ++++l + i  l    + l+ R  ++E+e++  L++  + +++k+++ +e      ++ + + ++l+et +  +q+++++ n
  MMETSP0890-20130614|39845_1  52 ITRDMTRQYKGMQEQLVDRITELSHTVQELQDRLdAAEREHSLTLREKDEIIQNKEDEINEIkakmEDMASEFGGMLKETLDKMRQRIEVSAN 144
                  55677889****************9999999998468****************9999777777777888999999999999999999888765 PP

>> PF01519.11  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  10.2       1.4   2.9e+02      30      98 ..      59     140 ..       4     143 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 1.4
   PF01519.11  30 eFKdandqrltki...Etkvdql.........aqgeqikkltetvekqgeqikelqveqkaqgetlq.lilktlekinkrld 98 
                  ++K +++q +++i     +v++l          ++  +++  e++++++++i+e +++++++ + +  ++ +tl+k+ +r++
  MMETSP0890-20130614|39845_1  59 QYKGMQEQLVDRItelSHTVQELqdrldaaerEHSLTLREKDEIIQNKEDEINEIKAKMEDMASEFGgMLKETLDKMRQRIE 140
                  55554544444331003344433555666566677777888889999*************9998886255679*******97 PP

>> PF12999.2  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   2.6      0.11        23     122     174 ..      31      83 ..      11      92 .. 0.59
   2 ?    4.7   0.5     0.089        18     108     148 ..      99     139 ..      81     149 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.11
    PF12999.2 122 iarkfeelleeankkvkkglkikeelllaakkkldelkkklkeledslkakkk 174
                  + +k+ ++++e +++  ++++i ++++++ k  +++l ++  el+++++  + 
  MMETSP0890-20130614|39845_1  31 LEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQLVDRITELSHTVQELQD 83 
                  34455555555555555666666666666666666666666655555554443 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.089
    PF12999.2 108 sdeelgkcenkcaeiarkfeelleeankkvkkglkikeell 148
                   de + + e++ +ei++k+e++ +e    +k++l+  ++ +
  MMETSP0890-20130614|39845_1  99 KDEIIQNKEDEINEIKAKMEDMASEFGGMLKETLDKMRQRI 139
                  46666666777777777777777777777777776555444 PP

>> PF07926.7  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  14.4      0.28        56       5     108 ..      14     122 ..      10     146 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.28
    PF07926.7   5 isslkeelkrlesqiaaieeqiqklkdDlenqaeiareaqdkYerelikhaet.iqeLtklkkelaelqkeaselrkead....sakaelneleekweeeksmLevels 108
                  +++  e  k++++++ a ee+  k+k++ e++ ++a e +++  r+++   e  +  +t+l+  ++elq+ ++  + e      ++ + ++++e++++e k+++e+  s
  MMETSP0890-20130614|39845_1  14 LAERTELMKEAREERRALEEKVAKIKSEFEEEQTTAMEITRDMTRQYKGMQEQlVDRITELSHTVQELQDRLDAAEREHSltlrEKDEIIQNKEDEINEIKAKMEDMAS 122
                  5566677899999***********************9999999999987666669999999999998888887766554311103333335555556666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2318  (0.169544); expected 273.4 (0.02)
Passed bias filter:                      986  (0.0721182); expected 273.4 (0.02)
Passed Vit filter:                       186  (0.0136044); expected 13.7 (0.001)
Passed Fwd filter:                       100  (0.00731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              68  [number of targets reported over threshold]
# CPU time: 1.58u 0.46s 00:00:02.04 Elapsed: 00:00:01.14
# Mc/sec: 318.82
//
Query:       MMETSP0890-20130614|39850_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-05   22.9  12.2     0.0046   16.4   2.0    3.8  5  PF13414.1  TPR repeat
    5.6e-05   22.8  18.9      0.049   13.4   0.9    4.7  5  PF13424.1  Tetratricopeptide repeat
     0.0088   15.1   1.5      0.089   11.9   0.0    2.8  3  PF10516.4  SHNi-TPR
  ------ inclusion threshold ------
      0.024   14.3  11.2      0.092   12.5   0.5    4.4  5  PF07719.12 Tetratricopeptide repeat
      0.047   13.3   5.9        6.2    6.7   0.1    5.7  6  PF13176.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   5.1e+03      26      46 ..      12      40 ..       9      44 .. 0.49
   2 !   16.4   2.0   1.7e-06    0.0046       6      67 ..      90     150 ..      86     152 .. 0.91
   3 !    5.5   0.1    0.0043        12       5      65 ..     163     226 ..     159     230 .. 0.76
   4 !   10.1   0.0   0.00015      0.42       1      67 [.     197     266 ..     197     268 .. 0.88
   5 ?    1.2   0.1     0.095   2.6e+02       9      51 ..     269     316 ..     243     330 .. 0.55

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.9
    PF13414.1 26 yekAleld........pnnaelyynlAla 46
                 y +A++ +        +++ ++ + lAla
  MMETSP0890-20130614|39850_1 12 YGQAIDANfrliqkleKDDDWCRAVLALA 40
                 55555433222222226666666666665 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.7e-06
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  + +l++ lf+ g+y+e ++a +kAl   + +  + ++l++a+    +d eeA+  +++A +l
  MMETSP0890-20130614|39850_1  90 ADALAEILFWSGRYKEGLKASRKALPKLKASQAAECALSAAHAAH-EDKEEAIFFFDQAAKL 150
                  56899********************99999**************6.578**********887 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0043
    PF13414.1   5 alkelGnalfkegdydeAieayekAleld....pnnaelyynlAlaylklgkdyeeAledyekAl 65 
                  a++ ++  +  +g+ +   + + kA  ld     + a l + lA+++l  g++  +A   ++kA+
  MMETSP0890-20130614|39850_1 163 AAYTAAVLANDKGERASCAARFLKAATLDaaddQEQARLQFLLAKTLLFSGRH-LDACIPARKAV 226
                  6778888999999999999999999999643336678899********99976.56666666665 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00015
    PF13414.1   1 enAealkelGnalfkegdydeAieayekAleldpnnaelyynl....AlaylklgkdyeeAledyekAlel 67 
                  e+A   + l+  l+  g++ +A+   +kA+ + p + ++y+ +    A ++    +++++ ++ +++Al l
  MMETSP0890-20130614|39850_1 197 EQARLQFLLAKTLLFSGRHLDACIPARKAVLIKPPDDKIYFDRldllAESFALS-QRFHDTIHVLKQALYL 266
                  5789999*******************************9999655558888886.5899999999999966 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.095
    PF13414.1   9 lGnalfkegdydeAieayekAleld.....pnnaelyynlAlaylklg 51 
                      +++ +d+d+A + +  A++ +      ++  l+   A a+ kl+
  MMETSP0890-20130614|39850_1 269 HTRIAWSTRDMDQARATLALATAFEevsdfHSSQPLWTDAASAFSKLN 316
                  444445555555555555555555322222222335555555555555 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.9   1.8e-05     0.049       7      77 ..      89     152 ..      83     153 .. 0.84
   2 !    7.8   3.5     0.001       2.8      10      72 ..     126     188 ..     119     193 .. 0.81
   3 !    5.3   1.8    0.0059        16       7      65 ..     163     218 ..     157     228 .. 0.80
   4 !   11.4   0.2   7.4e-05       0.2       8      75 ..     240     311 ..     235     314 .. 0.84
   5 ?    3.4   0.1     0.024        67      16      73 ..     274     329 ..     271     333 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.8e-05
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleiae 77 
                  + + la++l+  g+y+e l+  +kal  l+      +++a     l+ +++a++d +eA+ ++ +A ++++
  MMETSP0890-20130614|39850_1  89 CADALAEILFWSGRYKEGLKASRKALPKLKASQ--AAECA-----LSAAHAAHEDKEEAIFFFDQAAKLFS 152
                  67889*********************8853332..24566.....9999******************9986 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.001
    PF13424.1  10 nlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdyde.AleylekA 72 
                   l  ++ +++d +eA+ ++ +a +l+++  +++    +a +  a l + +g+ ++ A ++l+ A
  MMETSP0890-20130614|39850_1 126 ALSAAHAAHEDKEEAIFFFDQAAKLFSQINRHD-KAGDAAYTAAVLANDKGERAScAARFLKAA 188
                  4677888999***************99887554.569**************9999555555544 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0059
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeA 65 
                  + +  a +   +g+  ++ + + ka +l +     d+ + ar+ + la ++l  g++ +A
  MMETSP0890-20130614|39850_1 163 AAYTAAVLANDKGERASCAARFLKAATLdA----ADDQEQARLQFLLAKTLLFSGRHLDA 218
                  555666666799999999********9966....466678****************9888 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 7.4e-05
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalellrel....gddhpdtaralnnlanlylalgdydeAleylekAlei 75 
                  l+ la+++   +++++ +  +++al l r++      ++ d ara + la+++++  d+ ++ ++  +A  +
  MMETSP0890-20130614|39850_1 240 LDLLAESFALSQRFHDTIHVLKQALYLTRHTriawSTRDMDQARATLALATAFEEVSDFHSSQPLWTDAASA 311
                  5789***********************888633335589999*********999999999988887777665 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.024
    PF13424.1  16 rrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                  +  +d d+A++ +  a + ++e+ d h     ++++ a ++ +l++++ A+ + ++A 
  MMETSP0890-20130614|39850_1 274 WSTRDMDQARATLALATA-FEEVSDFHSSQP-LWTDAASAFSKLNKQQTAESCRQRAD 329
                  556777777777555544.456666665554.77788888888888888887777665 PP

>> PF10516.4  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.3e-05     0.089       2      28 ..      88     114 ..      87     115 .. 0.95
   2 ?   -2.1   0.4       0.8   2.2e+03      16      22 ..     143     149 ..     143     149 .. 0.86
   3 ?    1.0   0.0     0.083   2.3e+02       4      28 ..     240     264 ..     238     268 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.3e-05
    PF10516.4   2 dvydlLGEiSlEnEnFpqAveDlrkaL 28 
                  ++ d L+Ei ++++++++ ++ +rkaL
  MMETSP0890-20130614|39850_1  88 ECADALAEILFWSGRYKEGLKASRKAL 114
                  89****************999999998 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.8
    PF10516.4  16 nFpqAve 22 
                  +F+qA++
  MMETSP0890-20130614|39850_1 143 FFDQAAK 149
                  6****96 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.083
    PF10516.4   4 ydlLGEiSlEnEnFpqAveDlrkaL 28 
                  +dlL+E +  + +F++ ++ l+ aL
  MMETSP0890-20130614|39850_1 240 LDLLAESFALSQRFHDTIHVLKQAL 264
                  79****9999****99887777666 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0053        15       5      28 ..      91     114 ..      87     114 .. 0.85
   2 ?   12.5   0.5   3.4e-05     0.092       6      31 ..     126     151 ..     122     154 .. 0.90
   3 ?   -1.1   0.1       0.8   2.2e+03       5      25 ..     184     204 ..     180     211 .. 0.74
   4 ?   -0.3   0.0      0.43   1.2e+03       1      30 [.     199     228 ..     199     232 .. 0.75
   5 ?   -3.0   0.0       3.2   8.6e+03       7      29 ..     243     265 ..     240     268 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0053
                  HHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAl 28 
                   +l+++++ +g+y+e l+a +kAl
  MMETSP0890-20130614|39850_1  91 DALAEILFWSGRYKEGLKASRKAL 114
                  579************999877776 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.4e-05
                  HHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAleld 31 
                  +l  a+++  d eeA+ +f++A +l+
  MMETSP0890-20130614|39850_1 126 ALSAAHAAHEDKEEAIFFFDQAAKLF 151
                  7899********************97 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.8
                  HHHHHHHHHTT-HHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafe 25 
                  ++ +  + +++d e+A+  f 
  MMETSP0890-20130614|39850_1 184 FLKAATLDAADDQEQARLQFL 204
                  677778888888888887776 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.43
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAlel 30 
                  a++ ++l++ ++ +g++ +A    +kA+ +
  MMETSP0890-20130614|39850_1 199 ARLQFLLAKTLLFSGRHLDACIPARKAVLI 228
                  5678999*9999999998887656666555 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 3.2
                  HHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafekAle 29 
                  l+++ + ++++ + ++ +++Al 
  MMETSP0890-20130614|39850_1 243 LAESFALSQRFHDTIHVLKQALY 265
                  66666666666666667777775 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.84   2.3e+03      15      32 ..      12      30 ..       7      31 .. 0.75
   2 ?    0.6   0.0       0.2   5.4e+02      13      29 ..      66      80 ..      65      84 .. 0.84
   3 ?    0.9   0.0      0.16   4.4e+02       5      18 ..     147     160 ..     144     175 .. 0.88
   4 ?    0.8   0.1      0.18   4.9e+02       2      30 ..     240     268 ..     240     280 .. 0.85
   5 ?   -1.5   0.0         1   2.7e+03       3      15 ..     286     298 ..     284     301 .. 0.83
   6 ?    6.7   0.1    0.0023       6.2       6      24 ..     309     327 ..     304     336 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.84
    PF13176.1 15 yekAielyeraL.altkdp 32
                 y +Ai+++ r++ +l+kd+
  MMETSP0890-20130614|39850_1 12 YGQAIDANFRLIqKLEKDD 30
                 5678888888888887776 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.2
    PF13176.1 13 gdyekAielyeraLalt 29
                 ++++++i+l+++  a +
  MMETSP0890-20130614|39850_1 66 NKRQELISLLTQ--ATE 80
                 6899********..765 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.16
    PF13176.1   5 LarlysrlgdyekA 18 
                   a+l+s+ ++++kA
  MMETSP0890-20130614|39850_1 147 AAKLFSQINRHDKA 160
                  58999999999998 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.18
    PF13176.1   2 llnLarlysrlgdyekAielyeraLaltk 30 
                  l+ La+ +  ++++ + i ++++aL lt+
  MMETSP0890-20130614|39850_1 240 LDLLAESFALSQRFHDTIHVLKQALYLTR 268
                  578999999999999999*****998876 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 1
    PF13176.1   3 lnLarlysrlgdy 15 
                  l+La +++++ d+
  MMETSP0890-20130614|39850_1 286 LALATAFEEVSDF 298
                  7899999999998 PP

  == domain 6    score: 6.7 bits;  conditional E-value: 0.0023
    PF13176.1   6 arlysrlgdyekAielyer 24 
                  a+++s+l++ ++A+++ +r
  MMETSP0890-20130614|39850_1 309 ASAFSKLNKQQTAESCRQR 327
                  99****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1067.47
//
Query:       MMETSP0890-20130614|39851_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-42  144.3   4.1    4.1e-42  143.3   2.8    1.5  1  PF04939.7 Ribosome biogenesis regulatory protein (RRS1)


Domain annotation for each model (and alignments):
>> PF04939.7  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   2.8     3e-46   4.1e-42      32     163 ..      18     148 ..       3     149 .. 0.92

  Alignments for each domain:
  == domain 1    score: 143.3 bits;  conditional E-value: 3e-46
    PF04939.7  32 elardnvqllinqllslpiestedgvllkLPepttklPRekplPkpkpkTkWekFAkkKGikkrkksklvyDeetgewvprwGykrankdkekqwlvEv.kkkedegedpfekkraekkervkknekkekknk 163
                    a++++q+lin+l++lp e+++ g++++LP+  + lPR kp Pkp+++TkW++FAk KGi+k+kk+++v+De+tg w p wGy+ra    ++ +++E+ +++e  ++dp++ k+++kk+rv+knek++ +n+
  MMETSP0890-20130614|39851_1  18 RAAEKATQALINELFELPVERSDSGPIAQLPSSGMALPRFKPPPKPRAETKWQAFAKSKGIEKKKKGRMVWDEATGRWAPSWGYERAG--SDDPAIIEMsNNEETLMNDPRAVKEEAKKARVAKNEKQRAANE 148
                  568899********************************************************************************99..799******445555689**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       929  (0.0679491); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.81
# Mc/sec: 934.88
//
Query:       MMETSP0890-20130614|39855_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.7    6.4  66.0        4.6    6.1  19.8    4.4  3  PF00261.15 Tropomyosin


Domain annotation for each model (and alignments):
>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  19.8   0.00033       4.6      68     187 ..      29     163 ..      11     169 .. 0.70
   2 ?    3.6  19.0     0.002        27       4     172 ..     134     293 ..     133     298 .. 0.82
   3 ?    0.6   2.7     0.017   2.3e+02      20      96 ..     338     413 ..     325     423 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00033
   PF00261.15  68 eaekaadeserarkvlEnrelkd....dekleqlekqlkeakeiaeeadrk.......yeEvarklvvvekdLeraeeraeaaeskiaeLee....elkvvgnnlksLevseekaseredkyeekiklLtekLke 187
                  +  ++++e e+   +l ++e+ +    + + ++le++++ea++ ae a rk       +eE++ kl++++k+ + +e+ra aae+++++L +    +l+  ++  k+L    eka+e e++  + +   +++L  
  MMETSP0890-20130614|39855_1  29 QCLEKQNEIEKLSITLLEKEKDEdkkfEARQARLEAEVREARMAAEGAMRKctsfearCEEAESKLQIMTKEKNASEARAIAAETRVTKLINaqrdNLTSDDEARKQLVETIEKATENEKEAHRLLSAAEDRLAV 163
                  333444455544444433333330222455668999999999999999776332222269*****************************965222268899999****************999888888888765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.002
   PF00261.15   4 kqleeeldkaeerleeakekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleqlekqlkeakeiaeeadrkyeEvarklvvvekdLeraeeraeaaeskiaeLeeelkvvgnnlksLevseekasered 172
                  kql e+++ka e+++ea++ l +ae+r++ a+aE + l+       +ele+  +r ++a+ + +eae a+ + +r +++l+ r  ++  + ++l  ++  ++++  e  + ++E +r  +  e++++ra+e+ +aa  ++ eL ++l  ++ + ++ + + ++ ++r++
  MMETSP0890-20130614|39855_1 134 KQLVETIEKATENEKEAHRLLSAAEDRLAVADAERNRLR-------SELESLAQRCQHAELRADEAESAQADLKRQVNQLQARLEAQQSQSSRLLSEALATEKLRYE--TVVAESERLKARCEREMQRAQEQRDAARRQVDELGDRLVAATSTNQNDNHEPQEQYQRNE 293
                  577889999999999999999999999999999977654.......7999999999999999999999999999999999999888777776665555555555554..5689**********************************9888877776666666666655 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.017
   PF00261.15  20 akekleeaekraekaeaEvaslnrriqllEeelerseerleealekLeeaekaadeserarkvlEnrelkddekleq 96 
                   +e l++a kr+ k + +    ++r  ll  e  r + r+e++++kL+  +   +   r ++++++  ++ d kl++
  MMETSP0890-20130614|39855_1 338 EHEALDKA-KRLVKRQRDWLRRRQRKLLLQREAWRRSHRSEHTKQKLDAETNDINRLIRQLRTIQSWLSARDAKLRS 413
                  33444444.44444444444444444566777777788899999999988888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1947  (0.142408); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.55u 0.40s 00:00:01.95 Elapsed: 00:00:01.86
# Mc/sec: 796.21
//
Query:       MMETSP0890-20130614|39859_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-16   57.6   0.0    9.8e-16   57.5   0.0    1.0  1  PF05681.9 Fumarate hydratase (Fumerase)


Domain annotation for each model (and alignments):
>> PF05681.9  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   7.2e-20   9.8e-16       1      67 [.      21      88 ..      21      89 .] 0.94

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 7.2e-20
    PF05681.9  1 ltesvaeaikeastklpedvlealkkaledeesea.akevleqlleNaeiAaeeklplCqDTGiaivf 67
                 lt ++ ea++++++ l++ +l++l+++led+e+++ +++v+++ll+Na+iAa + lp CqDTG+ i++
  MMETSP0890-20130614|39859_1 21 LTALTYEAMTDVAHLLRPGHLAQLAAILEDDEASEnDRFVAMELLKNANIAAGKILPGCQDTGTGIII 88
                 577899**********************99988888****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       205  (0.0149941); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.93
# Mc/sec: 229.33
//
Query:       MMETSP0890-20130614|39863_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-16   57.2   0.0    1.1e-15   57.1   0.0    1.0  1  PF03055.10 Retinal pigment epithelial membrane protein
  ------ inclusion threshold ------
        0.1   10.7   0.0       0.12   10.5   0.0    1.1  1  PF02239.11 Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> PF03055.10  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.5e-19   1.1e-15     398     484 ..       2      97 ..       1      99 [. 0.85

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 1.5e-19
   PF03055.10 398 glvkldletgeakvwslgp.....ghyasEpiFVPrpda....keEddGyllsvvldedterseLlvldAkdmtegpvarvelpqrvpyGlHGnwv 484
                  +lvk+dl+t ++++w+  +      ++ sEp F Pr ++    +++ddG+lls+ +d +++ +eL ++dAk++++gp+ +  + +  p   H ++ 
  MMETSP0890-20130614|39863_1   2 SLVKFDLDTDQVDIWRPSDpqvrhYCVTSEPYFLPRLQQsdsnDDDDDGWLLSLLHDVANNVTELQIFDAKHLSTGPIWSTSIGKLWPWNVHTTFD 97 
                  69*************9875334124667*******5533334689***********************************************9996 PP

>> PF02239.11  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.7e-05      0.12     205     236 ..      52      83 ..      19      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.7e-05
                  EEEEEEE----BE-----EE--S----EEEEE CS
   PF02239.11 205 klvilldtgktphklrvanmvHlelGpvWkts 236
                   l+ l d+++ +++l++ +  Hl +Gp+W+ts
  MMETSP0890-20130614|39863_1  52 LLSLLHDVANNVTELQIFDAKHLSTGPIWSTS 83 
                  467899************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.39s 00:00:00.76 Elapsed: 00:00:00.68
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|39856_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-05   21.7   1.5    6.5e-05   21.4   1.0    1.1  1  PF01490.13 Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> PF01490.13  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.0   4.7e-09   6.5e-05       6      57 ..     119     170 ..     115     171 .] 0.91

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.7e-09
   PF01490.13   6 lsavlnlikaivGaGvLaLPyAfkqlGllvGlillllvalislytlllLvkc 57 
                   +a+l  +ka vG  vL +P  f+++Gl++Gl++l +   +  y+++ L+++
  MMETSP0890-20130614|39856_1 119 SEAFLASVKACVGPAVLYMPKGFQEAGLVFGLVMLSISYCLFGYGSTRLLET 170
                  5789999******************************999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.41s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 532.18
//
Query:       MMETSP0890-20130614|39870_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-30  105.6   0.0    2.5e-30  105.4   0.0    1.1  1  PF06762.9 Lipase maturation factor


Domain annotation for each model (and alignments):
>> PF06762.9  Lipase maturation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   1.8e-34   2.5e-30     189     362 ..      26     212 ..       2     228 .] 0.79

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.8e-34
    PF06762.9 189 sasaalllkilvevllalliaalsvvvvlnllsseqsqe....klef...............mnstlnpfslvNtYGlFgsitkeReEviiegtedkeaslkWkeieFkyKpgdlsrrprvvapyhpRLDWqmwfaalgtke..eepwllsflsrLlqnskevlsllaknpfknsdpptvlrakkykYrftklee 362
                  ++ + ++    + ++  + +a+l+++  +nl+ + +       +                     +l++++l+N+YG+Fgs+   R+E++i g++  + ++++ke+ F+          r++ap+h RLDWq w +a + +    e w++ +l +L+++s+++++ll++npf+ ++ppt +++ +y+Y+f  l++
  MMETSP0890-20130614|39870_1  26 NTISHNIGGSFFSMIGLFFFAWLNAPIFYNLFAPSSTRReerpR--QkmnaafdrllqlprlEPINLKSLRLANAYGAFGSVSDARDEIVILGSRGADDNYQFKEFSFHT------TACRQIAPWHLRLDWQKWILACTRRDinGERWFVALLLKLIDQSPDTIRLLRHNPFTSDNPPTHIKVDLYRYQFRALSS 212
                  4555556666777788888999999999***9999552223441..0345566778788775445679**************************9888889999888875......67899****************998877799*******************************************976532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 840.57
//
Query:       MMETSP0890-20130614|39865_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   13.1   0.2        1.5    8.4   0.0    3.3  3  PF13808.1 DDE_Tnp_1-associated
       0.08   11.4  11.5       0.78    8.2   2.6    2.3  2  PF04639.7 Baculoviral E56 protein, specific to ODV envelope
       0.39   10.8   5.2        2.8    8.1   0.2    3.5  3  PF13262.1 Protein of unknown function (DUF4054)
        2.1    8.5  10.5         20    5.4   0.2    4.2  4  PF11918.3 Domain of unknown function (DUF3436)


Domain annotation for each model (and alignments):
>> PF13808.1  DDE_Tnp_1-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00044       1.5      61      86 ..     313     338 ..     297     341 .. 0.87
   2 ?   -2.0   0.0      0.78   2.7e+03      72      85 ..     371     384 ..     363     388 .. 0.83
   3 ?   -0.3   0.0      0.23   7.8e+02      17      39 ..     412     434 ..     409     436 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00044
    PF13808.1  61 ngiPsedTirrvlarldpealeeafr 86 
                   g+P  +T +r+++++dp +le++++
  MMETSP0890-20130614|39865_1 313 GGMPDAETAARMMSNMDPSQLESMIG 338
                  579*******************9875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.78
    PF13808.1  72 vlarldpealeeaf 85 
                  ++ +ldp++l++++
  MMETSP0890-20130614|39865_1 371 MMDKLDPNQLKQVL 384
                  78899999999987 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.23
    PF13808.1  17 vrhkladiLllallavlsgadsw 39 
                   +h l  iL+   +a ls+ ++w
  MMETSP0890-20130614|39865_1 412 LKHILLGILAALAAALLSKFTKW 434
                  57889999999999999998888 PP

>> PF04639.7  Baculoviral E56 protein, specific to ODV envelope
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.6   0.00037       1.3      25     122 ..      38     137 ..      15     139 .. 0.73
   2 ?    8.2   2.6   0.00023      0.78      31     119 ..     173     266 ..     161     280 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00037
    PF04639.7  25 vstaeinsvlRnndvselrev...fpnatnsqin.glsqlRradnipDatlhslelrknavknskPetnvrteegvenaL..nqnPrLkdylktagvvtllgvg 122
                   s a   s +R  d+++lr++   f ++t++qi+ +++q+        ++    e+ kn++k+  Pe   ++++  + a+   ++P  + yl   + v l g g
  MMETSP0890-20130614|39865_1  38 ASFAAQASAMRGMDKATLRRMnpqFATMTDQQIDfAINQVEM----MSKNPAMFEMAKNQLKQLSPEQLQQQAQAAQTAIgaGNHPAANGYLEIGARVKLKGLG 137
                  455556678888888888888222555777887734555553....34556778999**********999999999999833589*******999999999976 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00023
    PF04639.7  31 nsvlRnndvselrevfpnatnsqinglsqlRrad.n.....ipDatlhslelrknavknskPetnvrteegvenaLnqnPrLkdylktagvvtll 119
                  n++ R++ + +l+++  n +n+q + l +++ ++ n     i ++  + ++++ + ++ ++P+ +  t e++++a++q   ++d +k  ++++++
  MMETSP0890-20130614|39865_1 173 NNLERSGPSPSLENLT-NSSNNQTAPLPNMKNIAeNldpesIREQARQLKSMDPATIRLTNPQMAHMTDEQIQSAVQQMDTMADLMKDPAMAQMV 266
                  6777888899999998.999**********98751411111333444455666789***************************999988887765 PP

>> PF13262.1  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00083       2.8       2      30 ..      56      84 ..      55     120 .. 0.79
   2 ?    3.0   0.1     0.031   1.1e+02       2      30 ..     229     257 ..     228     280 .. 0.80
   3 ?   -1.0   0.0      0.52   1.8e+03       5      25 ..     354     374 ..     350     402 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00083
    PF13262.1  2 ralfPefadvpddaieaaledAklllsak 30
                 r + P+fa + d++i++a+++ +++ ++ 
  MMETSP0890-20130614|39865_1 56 RRMNPQFATMTDQQIDFAINQVEMMSKNP 84
                 7899*****************98887765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.031
    PF13262.1   2 ralfPefadvpddaieaaledAklllsak 30 
                  r + P++a + d++i+ a+++ +++ +  
  MMETSP0890-20130614|39865_1 229 RLTNPQMAHMTDEQIQSAVQQMDTMADLM 257
                  6788**************99998887764 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.52
    PF13262.1   5 fPefadvpddaieaaledAkl 25 
                   P  a+++d++i+a l++ + 
  MMETSP0890-20130614|39865_1 354 NPMTANLDDATIDAQLKMMDK 374
                  688888999999999887654 PP

>> PF11918.3  Domain of unknown function (DUF3436)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3     0.062   2.1e+02      31      48 ..      90     107 ..      79     110 .. 0.76
   2 ?    5.1   0.0     0.007        24      21      49 ..     223     249 ..     217     251 .. 0.85
   3 ?    5.4   0.2    0.0058        20      29      45 ..     264     280 ..     259     284 .. 0.81
   4 ?   -3.8   0.0         4   1.4e+04      33      47 ..     370     384 ..     366     384 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.062
    PF11918.3  31 qapaltnLtqEeLlavLq 48 
                     +l +L++E+L ++ q
  MMETSP0890-20130614|39865_1  90 AKNQLKQLSPEQLQQQAQ 107
                  467899*******88766 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.007
    PF11918.3  21 YEPstleapqqapaltnLtqEeLlavLqk 49 
                   +P t+    + p+++++t E++ + +q+
  MMETSP0890-20130614|39865_1 223 MDPATI--RLTNPQMAHMTDEQIQSAVQQ 249
                  577777..6789***********999997 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0058
    PF11918.3  29 pqqapaltnLtqEeLla 45 
                    + ++l+n+t+E+L a
  MMETSP0890-20130614|39865_1 264 QMVKQQLSNMTPEQLQA 280
                  56789*********965 PP

  == domain 4    score: -3.8 bits;  conditional E-value: 4
    PF11918.3  33 paltnLtqEeLlavL 47 
                  + + +L + +L +vL
  MMETSP0890-20130614|39865_1 370 KMMDKLDPNQLKQVL 384
                  567889999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.81
# Mc/sec: 1449.65
//
Query:       MMETSP0890-20130614|39874_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       198  (0.0144822); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 346.14
//
Query:       MMETSP0890-20130614|39879_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       290  (0.0212112); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.40s 00:00:00.70 Elapsed: 00:00:00.71
# Mc/sec: 178.88
//
Query:       MMETSP0890-20130614|39878_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-34  119.2   0.1    1.9e-34  119.0   0.1    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.1   1.4e-38   1.9e-34       2     154 ..      20     170 ..      19     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 119.0 bits;  conditional E-value: 1.4e-38
                  XXXXXXXXXXXXXXXXXXX.-.--...-TTTTT--------TTT--------------.....----S--TT--......STT.-------S-TT.THHHH---HHHHHHHHTT-----------------------------------STTT----TTTTT------ CS
   PF00504.16   2 paeldgslpgdlgfDplglsk.dp...tlkrlreaEliHGRvAMlavlGalvpelltk.....lsaaskfaelpa.....wae.agglslptllalqillligflelareqelkapesegsekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvq 154
                  pa ldg+++gd gfDplgls+ d    +l +lreaEl+H+RvAMla++G+++ el++      +      ae+ +     w++ ++    p +++   +l+ g++e+     + +   + ++ +  pG+ gf+p+ ++     ++++++kE+ nGRlAM a++g+++q
  MMETSP0890-20130614|39878_1  20 PALLDGTMAGDKGFDPLGLSEiDDvgiDLYWLREAELKHCRVAMLAFAGIVFVELFGPlpgwpF------AEGRSqcdvfWDTvEE---HPNAIV-SAFLALGIVEVITGVAVTQ---GRESGKRAPGDYGFNPMDFK----VTESMAEKEVSNGRLAMWAMAGILLQ 170
                  7889****************53448*****************************9998544332......3333334455776333...888887.99*********75544433...33334666*********986....88999******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       258  (0.0188707); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.40s 00:00:00.85 Elapsed: 00:00:00.61
# Mc/sec: 738.55
//
Query:       MMETSP0890-20130614|39885_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-19   68.5   0.1    1.2e-18   67.2   0.0    1.7  2  PF08241.7  Methyltransferase domain
    4.6e-09   35.9   0.0      6e-09   35.5   0.0    1.2  1  PF13847.1  Methyltransferase domain
    2.4e-08   34.1   0.3    4.6e-08   33.2   0.1    1.6  2  PF13649.1  Methyltransferase domain
    7.7e-08   32.6   0.0    1.5e-07   31.7   0.0    1.5  1  PF08242.7  Methyltransferase domain
    1.3e-07   32.0   0.0    2.8e-07   30.9   0.0    1.5  1  PF12847.2  Methyltransferase domain
    1.6e-07   31.0   0.0    2.4e-07   30.4   0.0    1.3  1  PF13489.1  Methyltransferase domain
      2e-06   26.9   0.0    2.4e-06   26.7   0.0    1.1  1  PF01209.13 ubiE/COQ5 methyltransferase family
    0.00024   21.0   0.3    0.00055   19.8   0.2    1.6  1  PF13659.1  Methyltransferase domain
     0.0068   15.0   0.0      0.012   14.2   0.0    1.3  1  PF08003.6  Protein of unknown function (DUF1698)
  ------ inclusion threshold ------
      0.014   14.6   0.0      0.021   14.1   0.0    1.2  1  PF05175.9  Methyltransferase small domain
      0.057   12.4   0.0      0.065   12.2   0.0    1.2  1  PF03848.9  Tellurite resistance protein TehB


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0     1e-21   1.2e-18       2      95 .]      41     136 ..      40     136 .. 0.97
   2 ?   -1.8   0.0       3.3   4.1e+03      29      54 ..     174     210 ..     164     224 .. 0.61

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 1e-21
    PF08241.7   2 dvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfDvvvssevlehl...edpekalkeiaRvLkpgGllvi 95 
                  dvGcG+g+++ +l +  +a  +++D+s + l+ ak++++  + +++ ada  lpf+d+ fD+++  +vl+h+   +++  +++e  R+LkpgG++++
  MMETSP0890-20130614|39885_1  41 DVGCGNGKNAFPLCQG-GAVALACDISLRLLEIAKREASSVYYDCMAADAVYLPFRDECFDACLNIAVLHHMstpTRRIFLVAETLRILKPGGRCLF 136
                  9***************.*******************************************************9888888899************986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.3
    PF08241.7  29 eemlatakerlkeegle...........lvvadaeel 54 
                   ++l++  e++++++ +           + ++d++el
  MMETSP0890-20130614|39885_1 174 DSNLKYLPEHAERDDAKnalvlqrychvYDEGDLQEL 210
                  5555555555555555555555566566667776666 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.9e-12     6e-09       3     127 ..      35     155 ..      33     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 4.9e-12
    PF13847.1   3 sgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiqgdieeleklle.esfDlvisnevlnaladpqkvlk...eiervlkpggrlivespsllaelpeeleelsk.l 127
                  +g  v+D+GCG+G+ ++ l +    ga     Dis   +e Ak++a++  ++     ++d+  l+  +  e fD  +  +vl+++++p   +    e  r lkpggr++  ++++ ++  +e+++ ++ +
  MMETSP0890-20130614|39885_1  35 EGSIVCDVGCGNGKNAFPLCQ---GGAVALACDISLRLLEIAKREASSVYYD---CMAADAVYLP--FRdECFDACLNIAVLHHMSTPTRRIFlvaETLRILKPGGRCL-FYAWARDQRENEARSGHRfA 155
                  5778****************3...367799*********************9...8899******..99*******************8866566699**********9.66664555557777777752 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   3.7e-11   4.6e-08       1     101 []      39     132 ..      39     132 .. 0.91
   2 ?   -2.9   0.0       6.4     8e+03      36      49 ..     176     189 ..     161     212 .. 0.55

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.7e-11
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskglkvkfvqadaralpfeegefdlvvcaglsleh.lspkqlealleeiarvlkpgG 101
                  ++d+GCG+G +++ l +       +  ++ Dis + le ak+ +  +++  + + ada  lpf+++ fd+ +   ++l+h  +p     l++e++r+lkpgG
  MMETSP0890-20130614|39885_1  39 VCDVGCGNGKNAFPLCQGG-----AVALACDISLRLLEIAKREA--SSVYYDCMAADAVYLPFRDECFDACLN-IAVLHHmSTPTRRIFLVAETLRILKPGG 132
                  79**************995.....899*****************..5678999********************.677***77777777899*********99 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 6.4
    PF13649.1  36 alelakerlsskgl 49 
                   l++  e+++++++
  MMETSP0890-20130614|39885_1 176 NLKYLPEHAERDDA 189
                  44444444433332 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.2e-10   1.5e-07       2      98 ..      41     133 ..      40     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.2e-10
    PF08242.7   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvnlealdlldldggssfDvvvasnvlhhl..kdir.evldnirklLkpgGv 98 
                  ++GcG+G ++++l++   ++  +++Dis + +e ak++ ++   +   ++  +a  l  +d+   fD+ + + vlhh+  +++r +++++  + LkpgG+
  MMETSP0890-20130614|39885_1  41 DVGCGNGKNAFPLCQG--GAVALACDISLRLLEIAKREASSVYYD---CMAADAVYLPFRDE--CFDACLNIAVLHHMstPTRRiFLVAETLRILKPGGR 133
                  8***************..9999**********9999999998864...44444444445554..9*************9855556999***********8 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.2e-10   2.8e-07       4     108 ..      37     135 ..      35     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 2.2e-10
    PF12847.2   4 ri.lDlGcGtGslslelarlrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsllerfDavllkgltldallal...deprrv..lealpkllkpggrlv 108
                  +i +D+GcG+G  ++ l++  +ga  ++ D+s   le+a++ a     +   + + +da + +  +e+fDa l        +l++   +++r +  +++  + lkpggr +
  MMETSP0890-20130614|39885_1  37 SIvCDVGCGNGKNAFPLCQ--GGAVALACDISLRLLEIAKREA----SSVYYDCMAADAVYLPFRDECFDACLNIA-----VLHHmstPTRR-IflVAETLRILKPGGRCL 135
                  455****************..**********************....66777888999966666666799988866.....55554432222.22377888*******976 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     2e-10   2.4e-07      20     150 ..      33     179 ..      18     214 .. 0.68

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 2e-10
    PF13489.1  20 lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigkakqaqksqfdeed......aaepagkfdlivarevlehvpdpe...ellrqiaellkpgGylllstpnas....................lasdeafakwdylvprg..thisffsaeslke 150
                    +g  v+D+GcG+G ++  l + g+   + D+s  + ++ak+   s+++           + ++ fd  +++ vl+h+  p+    l+++  ++lkpgG  l+  + ++                    +               +  +h + ++ + lk 
  MMETSP0890-20130614|39885_1  33 SIEGSIVCDVGCGNGKNAFPLCQGGAVALACDISLRLLEIAKREASSVYYDCMaadavyLPFRDECFDACLNIAVLHHMSTPTrriFLVAETLRILKPGGRCLFYAWARDqrenearsghrfaapdvlvpF---------------HlrQHGNDWDDSNLKY 179
                  567889****************************9999995555555543333222233445999***************999544577888889***********9998777774444444444444441...............4444444444443333 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.9e-09   2.4e-06      39     151 ..      27     136 ..      17     188 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.9e-09
   PF01209.13  39 veklvavkrgakvlDvagGtgDlafklsdsvgekgkv.vvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDv...vtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                    + v++ +g+ v Dv +G g  af l +     g v   +Di+  +L+++++ +     +  + + a+a  Lpf d+ fD    ++v + +   t +   + e  r+lkpGGr + 
  MMETSP0890-20130614|39885_1  27 FAQSVGSIEGSIVCDVGCGNGKNAFPLCQG----GAVaLACDISLRLLEIAKREAS---SVYYDCMAADAVYLPFRDECFDAclnIAVLHHMSTPTRRIFLVAETLRILKPGGRCLF 136
                  456778899*****************9864....4441579*********997654...4456899***************6322455666666667777789**********9765 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   4.4e-07   0.00055       3     116 ..      38     139 ..      36     140 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.4e-07
    PF13659.1   3 rvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrdlydafleaaarllkpgGvlvlivp 116
                   v+d+gcG+G  ++ +++ + a +l+++++ r +++a+r++++       +   +d+  l+  +r+++fd+++      ++++++   r++   ++++ +r lkpgG++++  +
  MMETSP0890-20130614|39885_1  38 IVCDVGCGNGKNAFPLCQGG-AVALACDISLRLLEIAKREASSVYY----DCMAADAVYLP--FRDECFDACLN-IAVLHHMSTP--TRRIF--LVAETLRILKPGGRCLFYAW 139
                  599**************999.*******************986543....67778888888..********985.5555455544..34443..67999*********998765 PP

>> PF08003.6  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.7e-06     0.012     109     210 ..      29     126 ..      15     140 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.7e-06
    PF08003.6 109 phlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPs..elfliqfeavrkllg.edqrahllplgieqlpe.leafdtvfsmGvlyhrrsPldhllqlkdqlv 210
                  + +  ++g  + dvGcgnG   + +   g ++++  d s   l + + ea   + +     a+        lp   e+fd+ + + vl+h ++P  ++  + ++l+
  MMETSP0890-20130614|39885_1  29 QSVGSIEGSIVCDVGCGNGKNAFPLCQ-GGAVALACDISlrLLEIAKREASSVYYDcMAADAV-------YLPFrDECFDACLNIAVLHHMSTPTRRIFLVAETLR 126
                  456778999**************9765.55556666655004444555554444320222233.......34443789****************999988887764 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.021      32     137 ..      36     135 ..      25     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.7e-05
                  -----B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTTT--.--BS-EEE--------HHHHHHHHHHH---GGGB-----EE CS
    PF05175.9  32 agkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlleeveekkfdlivsNPPfhagkatelevaerliaeAkkhLkegGeLl 137
                  +  v D+GcG+G  +  l + +      ++Di+ r +e+ak+++++   +   + a  ++  + ++ fd+ +    +h+  +++ ++   l+ae  ++Lk+gG+ l
  MMETSP0890-20130614|39885_1  36 GSIVCDVGCGNGKNAFPLCQGGAV--ALACDISLRLLEIAKREASSVYYD--CMAADAVYLPFRDECFDACLNIAVLHHMSTPTRRI--FLVAETLRILKPGGRCL 135
                  33489*************998877..899*************99999888..45556678888899999999888888888855444..36778888999999864 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05     0.065      21      67 ..      26      72 ..      19     174 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.2e-05
                 HHHHHTTTS----EEE-------HHHHHHH----EEEEES-HHHHHH CS
    PF03848.9 21 evleavkvvkpgkaldlGcGqGrnslflsllgydvtavdkneasiai 67
                 e  ++v  ++ + + d+GcG+G+n++ l + g    a d +   ++i
  MMETSP0890-20130614|39885_1 26 EFAQSVGSIEGSIVCDVGCGNGKNAFPLCQGGAVALACDISLRLLEI 72
                 55667778888999************999998877777765544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       231  (0.0168958); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.65
# Mc/sec: 859.00
//
Query:       MMETSP0890-20130614|39883_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.3e-136  454.7   0.1   3.7e-136  454.5   0.0    1.0  1  PF02724.9  CDC45-like protein
     0.0007   19.1   0.2     0.0018   17.8   0.1    1.7  1  PF01368.15 DHH family
  ------ inclusion threshold ------
       0.28   10.1   4.9        0.4    9.6   3.4    1.1  1  PF01690.12 Potato leaf roll virus readthrough protein
       0.88    8.6  17.5        1.3    8.1  12.1    1.1  1  PF05285.7  SDA1
        1.3    6.7  20.7        1.8    6.2  14.4    1.1  1  PF04147.7  Nop14-like family
          4    5.4   4.1        5.6    4.9   2.8    1.1  1  PF03115.9  Astrovirus capsid protein precursor
        4.3    6.2  11.2        6.9    5.5   7.8    1.2  1  PF05477.6  Surfeit locus protein 2 (SURF2)


Domain annotation for each model (and alignments):
>> PF02724.9  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.5   0.0  1.9e-139  3.7e-136       1     625 [.      25     628 ..      25     630 .. 0.86

  Alignments for each domain:
  == domain 1    score: 454.5 bits;  conditional E-value: 1.9e-139
    PF02724.9   1 sVlilvaldvDalcAcriLtsLLkkdlipykivpVagysdLkraikelkedvksvvligcGgvvdLeefleld...esvevyViDshRPwnleNvfgasdqvivfddgdieeelekeeeerdayealvemkeeee...eesdedsdseddeeeeessasekrksesdedeeddddeededeeqrkrsnesslakslrrrrrrereekeevlekyYaqgtsygesisllvYsLaselgredndlLWlaivGvtslelskkidgerYetivellrdeVsrlnpkesseselteenngedettaksaddtsirl.eeelrllLlRHwsLydsmlhssyvasklklWtekGrkrLhkLLAkmGvsLkqakqkythmdmelkrelreklekyapkyglddlvfegFvrslGyk.aelsAaDvveavtAlLEvgkeavsksskseaeaaeaeeedeeeseekeeeswvsnFweAydaLdsknidllkeglelAkalqraivrtgtsllekkqirslrafrlavlkd..gpdlelFthplaLtkLalwllealaesekekkasrglPlvlaaldeekdtylvvgveaspeseesegknkFgraFqeaaeetnarvridsFetsvievrkeDlskFleaLslk 625
                  sV+++va+d+DalcAcr Lt+LLk+d++ yk+ pV+gysd+ +a+++l+  ++sv++i+cG+++++ +++  +   es ++yV+D hRP++++N  +  dqvi++d++  + e+ + +++ d  e+ ++++ee++   +e +ed d+e++++++++ +       +  d ++++dee+   ++r+r++e+  a++  r  +++r+e++++++kyY  +t+ ++++s+l ++L++ l+r+  +  Wla++G+ s + + +i+   Ye  v+ l++  ++++ +      l ++++ + + + ++    +i + ++e+r++L RH  L++sm++s+yva++l++W+++G+++L++LLA+mGvs++q++qk   ++ +l+r l ++le+  p+ygld+  ++++ r ++ +   ++A+D++  v+AlLE ++++ +++         ++  +++ ++  e+   v  Fw+Ayda   ++i+ l +g++ A  lq+aiv+t ++l+ek+ i +l++fr++ l    g+  e Ft+ +aL kLa +l+  ++++ k  ++++ +P+++  l e ++t+lv+gv  +p+      +n+Fg+ F+ a+   +a  r d+F+t  +evr+ D+++F+e+L++ 
  MMETSP0890-20130614|39883_1  25 SVVLFVAPDCDALCACRLLTTLLKQDNVVYKVLPVSGYSDIAEASQNLDASIRSVIMINCGAMINIGDLILSRqelESAQIYVLDHHRPIHIKNAHN--DQVIILDSDGDAGEIPSDGDDGDSDESESDEEEEDSileDEVQEDFDEEEEADDDNEIDA------DVGDSSENQDEEQRLHRRRRRRQEEAVARKEMRVAKAQRRERRRRIDKYY-DATYDATPSSMLGFALCEILSRAGPTEVWLAALGLASVQEQWRISDTFYEAFVKYLARSLRQMEAPY-----LARAATIVSDINGNTE-PGRIVYdGREPRFMLHRHLALFESMYYSNYVAARLSVWKKDGKQKLKELLARMGVSIDQSRQKVAFLPPSLRRALAQRLEEHGPRYGLDRPFRPSLGRLIDGCgDAVAATDAAACVSALLEAPAAHAAVN--------TEKLVTSAPRQVIERTAFVAGFWRAYDATLANDINTLAAGVDAAIDLQKAIVSTAVALIEKRDITTLKHFRYCYLHAaaGAASEAFTQAHALRKLAIFLFGIHKQNGKWTGDKE-RPILI--LAERHQTFLVIGV--QPNIA---VSNNFGQNFRLAVDHIKADYRADFFDTNFMEVRRHDVQRFIESLHYL 628
                  69******************************************************************887778999*****************998..999999999999998887666665444433333332433333333333333333333333......3334444444445556777777888889999***************9999.789*************************************************************999.....4455555544444444.3667776*******************************************************************************************99777699*****************4333333........333344566777899999**********999********************************************99666************************9999999877.99998..889999*******..44432...469*****************************************986 PP

>> PF01368.15  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   9.2e-07    0.0018      15      94 ..      31     118 ..      20     134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 9.2e-07
                  T--HHHHHHHHHHHHHHHHHH---TTSSS-----EEE--SS.....GGS--HHHHHHHHHS----E......EEEEEBS-SS--GGGT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
   PF01368.15  15 npDtDsvcSaiglahflnnvekgktfiparsgdltneslfv.....klvilvDhneitqapegvekekg...aeiliiDHHrlgglst 94 
                   pD+D++c++ +l ++l++ +   ++ p++  +   e  +        vi++ ++     +     +++   a+i+++DHHr+ + ++
  MMETSP0890-20130614|39883_1  31 APDCDALCACRLLTTLLKQDNVVYKVLPVSGYSDIAEASQNldasiRSVIMINCGAMINIGDLILSRQElesAQIYVLDHHRPIHIKN 118
                  59***************9999988888888877777765558999999999999766665555555444556**********988755 PP

>> PF01690.12  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00021       0.4     270     357 ..     141     230 ..      99     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00021
   PF01690.12 270 e..ssseretsktpsaeesesdaekgllslekedekeevskesesdaeeedeeltralaekeaaaeevkdaaeevlqskeepseklvesd 357
                  +  +s+e+e +++++++  e ++++ + ++e++d+ +e+  +  + +e++dee+   + ++++++e v +++++v++++++++ + +++ 
  MMETSP0890-20130614|39883_1 141 DdgDSDESESDEEEEDSILEDEVQEDFDEEEEADDDNEIDADVGDSSENQDEEQRLHRRRRRRQEEAVARKEMRVAKAQRRERRRRIDKY 230
                  1345667777777777777777799***************************************************99998888777765 PP

>> PF05285.7  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.1   0.00066       1.3      95     172 ..     139     219 ..     114     252 .. 0.45

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00066
    PF05285.7  95 edddeeWdvdsdeededeDe.egewvdvesd.eeeessDsedeeeesee....eeeeeesekkkkeesdeekseeeeeeaaeee 172
                  ++dd++ d +s++++e+eD+    + +v++d +eee+ D+++e + +      +++ee++ ++++++ +ee+ +++e + a+++
  MMETSP0890-20130614|39883_1 139 DGDDGDSD-ESESDEEEEDSiL--EDEVQEDfDEEEEADDDNEIDADVGdsseNQDEEQRLHRRRRRRQEEAVARKEMRVAKAQ 219
                  22222211.2333333333321..222333333444555555544333344422222222222222222222222222222222 PP

>> PF04147.7  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  14.4   0.00093       1.8     323     415 ..     128     224 ..      98     242 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00093
    PF04147.7 323 dddenfglgsaeeeeeeeeeegvededeeeddddeeeeeedvdedeeeedeedeesddeeeeeeeee......aseeeaeakkkkkktkkkkksaeetk 415
                  d d + g+  ++ ++ + +e++ ++e+e+++ +de+  +ed de+ee +d+++ ++d  +++e+++e        ++++e++  +k+ + +k +++e +
  MMETSP0890-20130614|39883_1 128 DSDGDAGEIPSDGDDGDSDESESDEEEEDSILEDEV--QEDFDEEEEADDDNEIDADVGDSSENQDEeqrlhrRRRRRQEEAVARKEMRVAKAQRRERR 224
                  333333332222222222223333333333444444..3344443333333333333333333333322344433333444444444444444444444 PP

>> PF03115.9  Astrovirus capsid protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   2.8    0.0029       5.6     604     711 ..      93     196 ..      60     253 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0029
    PF03115.9 604 wvwlnvelknntayladqvlahlitplgeaskilfelrtalpeekaelseleeravedaeepaedlvseeetdtetestedesd..eldrfdlkassgsesededennrv 711
                  +++ ++el++ + y+ d+  +  i+   +++ i+ +      e  +   + +++++e + e++ed++ e+e + + +++e+ +d  e+   d+ +ss++++e++      
  MMETSP0890-20130614|39883_1  93 LILSRQELESAQIYVLDHHRPIHIKNAHNDQVIILDSDGDAGEIPSDGDDGDSDESE-SDEEEEDSILEDEVQEDFDEEEEADDdnEI-DADVGDSSENQDEEQR----L 196
                  567788888888899998888888888888888777766666666666665555554.444445545555544444444433331233.3456665555555544....2 PP

>> PF05477.6  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.8    0.0036       6.9     160     235 ..     138     219 ..     111     228 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0036
    PF05477.6 160 sdeddadseDsmsDlyPpelftkkelek....eqdtdeeddFetddedemeveseeke..qkrskkqseslkkkfkkahkkk 235
                  sd dd+ds++s+sD+   +   + e+++    e+++d++++ ++d  d  e++ ee++   +r+++q e   +k  ++ k +
  MMETSP0890-20130614|39883_1 138 SDGDDGDSDESESDEEEEDSILEDEVQEdfdeEEEADDDNEIDADVGDSSENQDEEQRlhRRRRRRQEEAVARKEMRVAKAQ 219
                  4677788888888886554444443333010033333344444443344333333333334444555555444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1083  (0.079213); expected 273.4 (0.02)
Passed bias filter:                      514  (0.0375951); expected 273.4 (0.02)
Passed Vit filter:                        86  (0.00629023); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.31u 0.41s 00:00:01.72 Elapsed: 00:00:00.94
# Mc/sec: 1608.62
//
Query:       MMETSP0890-20130614|39888_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.54   10.6   0.0    2.1  3  PF08241.7 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.18   2.5e+03      23      63 ..      40      80 ..      18      88 .. 0.74
   2 ?   10.6   0.0     4e-05      0.54       3      74 ..      98     169 ..      96     190 .. 0.77
   3 ?   -3.9   0.1         1   1.4e+04      55      63 ..     251     260 ..     249     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.18
    PF08241.7 23 tgvDlseemlatakerlkeeglelvvadaeelpfednsfDv 63
                 t  D++e++ ++a++r + e   l   d+e+  ++ ++ D+
  MMETSP0890-20130614|39888_1 40 TRKDYWERSYKRAENRVASEWCGLGYRDFEKYSYRTENNDL 80
                 55688899999999988888777777777777777777666 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4e-05
    PF08241.7   3 vGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvadaeel..pfednsfDvvvssevlehl..e 74 
                  +G+Gt ll + + ++  +++t +D+  +    a+    ++++ ++++da+ l   f+ nsfD+++   ++  +   
  MMETSP0890-20130614|39888_1  98 LGSGTSLLGADMYQAGWRDLTQLDFAST----AQLFTIPDKIPFIRGDARFLrqYFQQNSFDAIIDKGTIDSIylS 169
                  6777777777777777788888888888....77777888888*****8888779*********999999877552 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 1
    PF08241.7  55 pfedn.sfDv 63 
                  pf+dn +fDv
  MMETSP0890-20130614|39888_1 251 PFDDNlTFDV 260
                  8999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       191  (0.0139702); expected 273.4 (0.02)
Passed bias filter:                      175  (0.0127999); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 1007.22
//
Query:       MMETSP0890-20130614|39898_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   37.3   0.0    3.6e-09   35.8   0.0    1.9  2  PF08711.6 TFIIS helical bundle-like domain
  ------ inclusion threshold ------
        0.2   10.2   3.4       0.34    9.5   2.4    1.4  1  PF06122.6 Conjugative relaxosome accessory transposon protein


Domain annotation for each model (and alignments):
>> PF08711.6  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.4   9.9e+03      24      35 ..     110     120 ..     108     123 .. 0.53
   2 !   35.8   0.0   5.2e-13   3.6e-09       3      52 ..     209     264 ..     207     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.4
    PF08711.6  24 aVnklrkhtene 35 
                  +  +l+k+ +++
  MMETSP0890-20130614|39898_1 110 TLAALKKK-KTK 120
                  45556666.444 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 5.2e-13
    PF08711.6   3 LkvLkklpitlelLke.....TgiGkaVnklrkh.teneevrklAkkLikkWkriv 52 
                  L++ + lp   e+Lk+     T++G++V+k+++   e++++r+lA+kL++ W+r+v
  MMETSP0890-20130614|39898_1 209 LEIMQPLPAQPEHLKKltgsgTNVGRIVMKYSRDpRETPANRRLARKLVEAWSRPV 264
                  555566677777777666666**********************************8 PP

>> PF06122.6  Conjugative relaxosome accessory transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.4   4.9e-05      0.34     141     224 ..      55     140 ..      12     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.9e-05
    PF06122.6 141 qseckalgsssglfsDlfaarkkcqsegkrsa..tsaaakadkeekeqvlkqgNlvwkalkksgllessdkelaellmslvGtvii 224
                  ++ +++ g++++l++ ++++++++ ++  +++  +++ ++++ke+k++  + +  +  alkk+++ e +++e  ++ m+++G +  
  MMETSP0890-20130614|39898_1  55 KAFIDNEGDDKELLAEYAKETQNFDEDAPDTEfeQKDDEEKKKEKKKEDNTPFGQTLAALKKKKTKEMNQDEKDKICMGILGRMND 140
                  33344466999*********999999999999875555666666666666778889999****9999***************8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1466  (0.107226); expected 273.4 (0.02)
Passed bias filter:                      409  (0.0299152); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                        19  (0.0013897); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.72
# Mc/sec: 1231.46
//
Query:       MMETSP0890-20130614|39899_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0092   15.2   0.0      0.017   14.3   0.0    1.5  1  PF00850.14 Histone deacetylase domain


Domain annotation for each model (and alignments):
>> PF00850.14  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-06     0.017     279     305 ..      10      37 ..       1      38 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.2e-06
                  -.-EEEB------TTTTTT---HHHHHH CS
   PF00850.14 279 g.kvvlvleGGYnlealaraalavlagl 305
                  g +++++++GGY+ +++ar++++ +++l
  MMETSP0890-20130614|39899_1  10 GlPLLVLGGGGYTIRNVARCWAYETSVL 37 
                  459********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       360  (0.0263312); expected 273.4 (0.02)
Passed bias filter:                      172  (0.0125805); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.38s 00:00:01.25 Elapsed: 00:00:00.87
# Mc/sec: 1570.03
//
Query:       MMETSP0890-20130614|39902_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.72
# Mc/sec: 885.32
//
Query:       MMETSP0890-20130614|39910_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-11   41.3   0.2    1.6e-10   40.5   0.2    1.4  1  PF07647.12 SAM domain (Sterile alpha motif)
    1.8e-10   40.7   0.3    3.7e-10   39.7   0.2    1.6  1  PF00536.25 SAM domain (Sterile alpha motif)
    1.8e-08   34.1   0.0    7.8e-08   32.1   0.0    2.0  2  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
     0.0036   16.9   0.1      0.007   16.0   0.0    1.4  1  PF02198.11 Sterile alpha motif (SAM)/Pointed domain
  ------ inclusion threshold ------
      0.037   12.4   5.7      0.051   11.9   3.9    1.1  1  PF05786.9  Condensin complex subunit 2


Domain annotation for each model (and alignments):
>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.2   5.8e-14   1.6e-10       3      62 ..      54     112 ..      52     116 .. 0.93

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 5.8e-14
                  H-HHHHHHHHHHHT--CCSHHHHHHHTS-SCTCCCSSCHHHHHCCCHHCHHHHHHHHHHH CS
   PF07647.12   3 swsledvaeWLrsiglkqYtenFrdqgitggelllrlteedLkrlGitsvghrkkilkki 62 
                   w +e+v  W+  + l+qY++n+ ++++ g +lll+++e+d  +lGi +  h ++i  ++
  MMETSP0890-20130614|39910_1  54 HWRNEQVVAWFMDMELAQYVPNLIQSKVNG-LLLLNMDEDDFRELGIIKRLHLRQIDLAL 112
                  599***************************.9999******************9997665 PP

>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.2   1.3e-13   3.7e-10       1      63 [.      53     115 ..      53     116 .. 0.95

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.3e-13
                  X-TT-SSHHHHHHHTT-GGGHHHHHCT--SHHHHTT--HHHHHHH-------HHHHHHHHHHH CS
   PF00536.25   1 sewsvedVgeWLesiglgqYvdnFrageidgdallllteedLeklgvtllGHrkkIlssIqrl 63 
                  ++w+ e+V+ W  ++ l+qYv n  + +++g  ll+++e+d+++lg+ +  H   I  +++++
  MMETSP0890-20130614|39910_1  53 EHWRNEQVVAWFMDMELAQYVPNLIQSKVNGLLLLNMDEDDFRELGIIKRLHLRQIDLALRKY 115
                  58***************************************************9999999876 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.84   2.3e+03      25      46 ..     142     161 ..     115     165 .. 0.72
   2 !   32.1   0.0   2.8e-11   7.8e-08       7      50 ..     211     255 ..     206     256 .] 0.94

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.84
                  EEETTTTTCEEEEECCTTSS-H CS
   PF00254.23  25 fdssysrakpfefkvGsgqvik 46 
                  ++++  ++++++f+ Gs  + k
  MMETSP0890-20130614|39910_1 142 LADE--NDEDITFDQGSDAMSK 161
                  3333..7889999999877665 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 2.8e-11
                  CT-EEEEEEEEEE..---EEEETTTTTCEEEEECCTTSS-HHHHH CS
   PF00254.23   7 egdtVtvhyegkle.dgtvfdssysrakpfefkvGsgqvikglee 50 
                   gd+V++hy++kl+ +g++++++++++ pfef +G gqvi gl+ 
  MMETSP0890-20130614|39910_1 211 IGDIVRCHYVCKLAqNGQEIENTRKNKLPFEFVLGIGQVILGLDR 255
                  69***********99***************************985 PP

>> PF02198.11  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.5e-06     0.007      14      63 ..      49      96 ..      36      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.5e-06
                 -CSGGG--CCHHHHHHHHHHHHTT-SS--GGGCT----HHHH--HHHHHC CS
   PF02198.11 14 pedPqeWteedVleWlewavkefdlekidfekfdisGkeLcslskeeFle 63
                 + + ++W +e+V++W  ++     ++++  +k  ++G  L+++ + +F+e
  MMETSP0890-20130614|39910_1 49 SRHIEHWRNEQVVAWFMDMELAQYVPNLIQSK--VNGLLLLNMDEDDFRE 96
                 45889*************99988888876666..9*************98 PP

>> PF05786.9  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.9   1.8e-05     0.051     300     383 ..     105     189 ..      82     208 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
    PF05786.9 300 lagfdladpsksaedkflkatedtenedlsddnaddlddddkktdvaFDlnaeaed..daeadvvdegdggdaeefeaakepvlkv 383
                  l+++dla  + ++  +  +a ed++++d+ dd++ddl++d++++d+ FD + +a    + +++ +de   +d +++  ++e  + +
  MMETSP0890-20130614|39910_1 105 LRQIDLALRKYRKRYELDHAIEDYDDDDGIDDDDDDLLADENDEDITFDQGSDAMSkaKDDDSDIDELARND-DNLPTEDEVLELQ 189
                  4455555555667778999********************************999985544444556666666.5666666665332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1039  (0.0759947); expected 273.4 (0.02)
Passed bias filter:                      645  (0.0471767); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.47s 00:00:01.12 Elapsed: 00:00:00.85
# Mc/sec: 721.73
//
Query:       MMETSP0890-20130614|39909_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       335  (0.0245026); expected 273.4 (0.02)
Passed bias filter:                      235  (0.0171884); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.38s 00:00:01.21 Elapsed: 00:00:01.12
# Mc/sec: 1160.01
//
Query:       MMETSP0890-20130614|39914_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-36  126.2   0.1    1.4e-36  125.9   0.0    1.1  1  PF00857.15 Isochorismatase family
  ------ inclusion threshold ------
       0.16   11.7   0.3       0.45   10.2   0.1    1.8  2  PF06844.6  Protein of unknown function (DUF1244)


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0     2e-40   1.4e-36       9     173 ..       2     180 ..       1     181 [. 0.95

  Alignments for each domain:
  == domain 1    score: 125.9 bits;  conditional E-value: 2e-40
   PF00857.15   9 qndfl.......egvleseeieavvenikkllkaarkagipviftrdvhe......leeakgdlekkkasphfepgttgaelvdelaplegdvvvd.KtrysafagtdldeiLkelgiktlvlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitte 173
                  qn+f+       ++v+++++ +++++n++  ++aar++gi++i+    ++       ++  g l    +++ f+ +t+ +e+ ++++p++gd++v+ K++ +af gtdl++iL  ++i+t+ laG+ t++CVe+t+r a+++G++v+ + D++a+ s+++++aa    +++f  ++t++
  MMETSP0890-20130614|39914_1   2 QNEFVseggklhDAVKDVMDETDMLKNAVAIAHAAREKGIKIIHAPIHFSsdgndnPNKGLGILAGCYNDKLFTLNTWNSEFAPAMKPKQGDIIVNnKRGLDAFPGTDLEQILIDNNIETICLAGFLTNCCVESTMRTAYEKGFNVITLIDCCATTSTDGQKAATHGTFNMFSRPLTST 180
                  9999999999999************************************999997777777888888999*************************99***************************************************************************9999876 PP

>> PF06844.6  Protein of unknown function (DUF1244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.59     4e+03      21      32 ..      32      43 ..      18      45 .. 0.67
   2 ?   10.2   0.1   6.5e-05      0.45       3      32 ..     118     147 ..     116     150 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.59
                 HHHHHHH----- CS
    PF06844.6 21 ykeaaeekgvel 32
                 +++aa+ekg+++
  MMETSP0890-20130614|39914_1 32 IAHAAREKGIKI 43
                 467788888776 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 6.5e-05
                  HHHHHHH----HHHHHHHHHHHHHH----- CS
    PF06844.6   3 NidLmnlagFCRNCLskWykeaaeekgvel 32 
                  Ni+ + lagF  NC  + ++  a ekg+++
  MMETSP0890-20130614|39914_1 118 NIETICLAGFLTNCCVESTMRTAYEKGFNV 147
                  9****************9999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       385  (0.0281597); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.40s 00:00:00.88 Elapsed: 00:00:00.78
# Mc/sec: 580.66
//
Query:       MMETSP0890-20130614|39906_1  [L=865]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-20   72.8   0.0    3.3e-20   72.0   0.0    1.4  1  PF08235.8 LNS2 (Lipin/Ned1/Smp2)


Domain annotation for each model (and alignments):
>> PF08235.8  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   2.4e-24   3.3e-20       2     153 ..     476     630 ..     475     634 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 2.4e-24
    PF08235.8   2 visdiDGtitksda..lGhllslvGkd...ktraGvaklvrkiqenGYkilyltaRavgqadstrayLkqvkqdgvklPdgpvilsPdrllaalkreviekkPekfKialLkdikelfaeektpfyagfGnrikDvisYrsvgvpesrifivnkkge 153
                  v++diDG +++s    l  l   +G+    ++r+ va+ ++++ ++GY+i+ylt+Ra+g a++tr+ L+q  + +++lP++pv+l+P +ll + +    + + ++fK+a+L+ +  lf+  + p+ a+   ++ +v+ Y + g+p+ r+f + ++ e
  MMETSP0890-20130614|39906_1 476 VFADIDGVVAQSGSapLQLLSRRLGSGaaaHSRSEVAEFFTNVAKHGYRIVYLTTRAIGVASATREALQQRWEGDASLPQAPVLLAPGSLLDSAYYS-KDFDATRFKAAALRGVLALFP-GRRPLWAALARENDNVSPYLEAGIPRGRVFRICRDDE 630
                  99*********964224444556776543578999*******************************************************9775543.345789*************87.899********9888999************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       708  (0.0517847); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.43s 00:00:01.66 Elapsed: 00:00:00.97
# Mc/sec: 2136.96
//
Query:       MMETSP0890-20130614|39923_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       134  (0.00980105); expected 273.4 (0.02)
Passed bias filter:                      133  (0.00972791); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 313.89
//
Query:       MMETSP0890-20130614|39924_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-07   29.1   0.5    2.2e-06   27.5   0.0    2.1  3  PF03457.9 Helicase associated domain
  ------ inclusion threshold ------
       0.02   15.2   4.1        0.3   11.4   0.2    2.3  2  PF07813.7 LTXXQ motif family protein


Domain annotation for each model (and alignments):
>> PF03457.9  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   7.9e+03      53      65 ..       8      20 ..       6      22 .. 0.66
   2 !   27.5   0.0   3.2e-10   2.2e-06       4      67 ..      31      91 ..      28      92 .. 0.92
   3 ?   -2.0   0.0      0.52   3.6e+03      41      51 ..      93     103 ..      92     112 .. 0.62

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
    PF03457.9 53 tLsperieqLeal 65
                 +L++++  +L a+
  MMETSP0890-20130614|39924_1  8 KLTEQQNHRLKAV 20
                 5777777777665 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 3.2e-10
    PF03457.9  4 addaWeeglaaLrafaaehGhlnvPrdateegfkLGqWlknqRaaarkgtLsperieqLealgf 67
                 +++++e+ ++ L +f+++ Gh+ vP d+ ++     + ++ +R  +    L++e++++L+++gf
  MMETSP0890-20130614|39924_1 31 KRRTFEQDIQDLIQFKQKFGHTAVPDDY-DNSSAFTNRINAIRWGRIS--LTAEQRQALNDIGF 91
                 6899****************999*****.8899999999999976666..*************9 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.52
    PF03457.9  41 WlknqRaaark 51 
                  W ++ R++ r 
  MMETSP0890-20130614|39924_1  93 WTAEERKKQRD 103
                  66666666654 PP

>> PF07813.7  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0033        22      11      26 ..       5      20 ..       2      54 .. 0.88
   2 ?   11.4   0.2   4.4e-05       0.3      13      48 ..      76     110 ..      69     117 .] 0.77

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0033
    PF07813.7 11 aeLkLtdaQkaalkal 26
                 +e+kLt++Q  +lka 
  MMETSP0890-20130614|39924_1  5 NEIKLTEQQNHRLKAV 20
                 699**********986 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.4e-05
    PF07813.7  13 LkLtdaQkaalkalaeaaraearelkakkeemramr 48 
                  + Lt +Q++al+++  a+ ae r+  +  e  +a+r
  MMETSP0890-20130614|39924_1  76 ISLTAEQRQALNDIGFAWTAEERKK-QRDEVAAALR 110
                  789************9999999998.4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       501  (0.0366442); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.67
# Mc/sec: 418.47
//
Query:       MMETSP0890-20130614|39922_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-135  451.2   3.2   1.3e-134  449.5   2.2    1.7  1  PF01204.13 Trehalase
  ------ inclusion threshold ------
      0.096   12.3   0.1       0.22   11.2   0.1    1.5  1  PF10798.3  Biofilm development protein YmgB/AriR


Domain annotation for each model (and alignments):
>> PF01204.13  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.5   2.2  1.9e-138  1.3e-134       2     508 ..      81     629 ..      80     631 .. 0.94

  Alignments for each domain:
  == domain 1    score: 449.5 bits;  conditional E-value: 1.9e-138
   PF01204.13   2 lfgdsktfvdeallsevnrilrlikasferaltrritkedlekfvkdtfeeegselerivpkdekeqpeflkkiedeslrleaeelnklwkalvrkvkkkvklkpeassllpvpkpfvvPGgRFrElYyWDsYwiilGLlasekvdlakgmvenfiyliekYGfipNgnRsYYlsRSQPPlltdmvlevyekt............eddalvrallaalkkeyefwmaekrldevtklskryklnrygvesetprpesysedketaeklkkerekeelyrdlkeaaesgwdfssRwlresgkdtselleirttklvpvDLNallyklekdiaefekklgd..........................................sekskefeeraekrkeaidkvlwneeagvylDYdlkkk......kqtnyfsasnlvpLwaglasseqaeklvakvlekleesgllsapgglptsllkrsgqQWDyPngWaPlqilaveglrkyge...eelaeelaerwlktvtkafsdegklvEKYdvtreaeygggggeyvvqeGFGWtNgvvlelL 508
                  lf+dsktfvd+++ s++++il+++++ +       ++ e++++fv+++f +++ ele+++p+d+++ p   ++i+d + r++a +ln+ wk+l r+v +k +l++++ssll+ p pf+ PGgRFrE YyWDs+wi++GLlas+++++ak+++ n++  i ++Gf+pNg+R+YYl+RSQPPll++m+  +++++            +  +++r+ l  l++ey+ wm   ++++ + ls++y+lnry++++++prpes++ed++ta++++   +k+ ly+++++aaesgwdfs+Rw+++ gk+   l+++ t++++pvDLNa+++  e ++a +++ l                                              + +++ + a+kr++ai+++lw+ e  ++ D +l ++       q+ + +as ++ Lwag a+  +    +a + + l++   l   gg  tsl+  sgqQWD Pn+W+Plq+ +++gl++      ++la +  + wl++++  ++++g+++EKY+  + + +g  ggey+++ GFGWtNgvvl+l+
  MMETSP0890-20130614|39922_1  81 LFNDSKTFVDMRMRSSPEEILNKFSELESP-----LDYEKVNSFVHEYFFDADGELENWTPTDWTPLPFRISHIDDIDTRRWAIDLNERWKELGRRVADKRNLTEARSSLLAPPYPFIAPGGRFREPYYWDSFWIVKGLLASDMHQTAKNIISNLLEYIANFGFVPNGGRVYYLNRSQPPLLSEMLIAYLDSLfshkqntqqnnfAHIEFIRRALYLLETEYSWWM---HSEHAVSLSDGYVLNRYYANTSNPRPESWREDVTTAASVQ---DKAMLYANIAAAAESGWDFSTRWMAD-GKH---LDSTCTNNIIPVDLNAIMLRFEYNLALLHSLLLRyqttnslssawstlhsfrydseselnnnenysddidfankehRDSVRRYINAAQKRRAAIQALLWKPELSCWRDLWLTNNcnsaayYQSFQPYASDFIMLWAGGADGLD----IAIQASILKTILTLYKRGGFTTSLNG-SGQQWDLPNAWPPLQYFLIRGLDRLDLpaaKQLATDATYTWLQSNYLGWNTSGVMMEKYNALEPGVSG-QGGEYKPEIGFGWTNGVVLDLI 629
                  79**********************998876.....699*****************************999999**********************************************************************************************************************************9999*******************...7888888999****************************98...99************************.776...**************************55555555555667888999999999999999**************999888899*******************************998888887888889*************988....44445555565566657777777777.*************************98889********************************888888.*******************987 PP

>> PF10798.3  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.2e-05      0.22      10      34 ..     210     234 ..     209     236 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
    PF10798.3  10 iveeilqsdshvsnKdiIlkLihkl 34 
                  iv+++l+sd h + K+iI +L++ +
  MMETSP0890-20130614|39922_1 210 IVKGLLASDMHQTAKNIISNLLEYI 234
                  89*******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       552  (0.0403745); expected 273.4 (0.02)
Passed bias filter:                      396  (0.0289643); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.52s 00:00:01.52 Elapsed: 00:00:01.14
# Mc/sec: 1406.56
//
Query:       MMETSP0890-20130614|39934_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    7.7   7.0       0.39   10.5   1.1    2.4  2  PF07589.6 PEP-CTERM motif


Domain annotation for each model (and alignments):
>> PF07589.6  PEP-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   2.8e-05      0.39       7      23 ..      25      40 ..      24      41 .. 0.90
   2 ?   -2.5   0.2      0.36   4.9e+03      13      18 ..      65      70 ..      64      73 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.8e-05
    PF07589.6  7 tlaLlglGLaglgalrr 23
                 +laL+g+GL+glg  +r
  MMETSP0890-20130614|39934_1 25 SLALIGVGLLGLGS-FR 40
                 79***********8.54 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.36
    PF07589.6 13 lGLagl 18
                 +GL+ l
  MMETSP0890-20130614|39934_1 65 FGLGSL 70
                 455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      281  (0.020553); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.39s 00:00:00.81 Elapsed: 00:00:00.62
# Mc/sec: 660.93
//
Query:       MMETSP0890-20130614|39940_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-13   49.3   0.7    1.1e-12   47.7   0.1    2.0  3  PF01648.15 4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> PF01648.15  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.79   1.1e+04      98     111 ..      19      32 ..      13      33 .. 0.69
   2 !   47.7   0.1   7.7e-17   1.1e-12       2     111 ..      40     154 ..      39     156 .. 0.81
   3 ?   -1.5   0.0      0.14     2e+03      14      36 ..     227     249 ..     214     273 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.79
   PF01648.15  98 lhlslshdgeyvva 111
                  +   +sh+g++vv+
  MMETSP0890-20130614|39940_1  19 FNFNVSHEGDLVVI 32 
                  45567899988876 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 7.7e-17
   PF01648.15   2 vGiDiekvkrl..........rlldkllkriltesEreelaslaq.drqeqafarlWsaKEAvyKalgvg.glplsrkelefsdartgkpslslswsskaadasstaklhlslshdgeyvva 111
                  vG+D+ +  +l          ++l+k +++ ++  E++++as ++ + + q f+ lW+aKEA++Ka+g g  ++l+r e++   ++  +        +   + s +++++l+  +++++v++
  MMETSP0890-20130614|39940_1  40 VGVDVCSALQLvqrrtetnflDELAKSFRHSFSSLEWRTIASAPDdTSRFQIFRTLWAAKEAFVKARGDGlLFDLARLEFSHTTESELQ-------LRIDGKLSAEWHFSLQNLDQDHVVCV 154
                  79999988555566688988888999999999*************9**********************876778999988888885544.......55677777777777777777776665 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.14
   PF01648.15  14 lldkllkriltesEreelaslaq 36 
                  ++++l++r ++++ ++ ++++ +
  MMETSP0890-20130614|39940_1 227 APPSLADRACSDNNLHAFQQRVS 249
                  67788888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.62
# Mc/sec: 1120.88
//
Query:       MMETSP0890-20130614|39946_1  [L=970]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-31  106.9  16.2    1.6e-12   46.6   0.1    6.0  5  PF00432.16 Prenyltransferase and squalene oxidase repeat
    1.6e-24   85.9   1.9    1.1e-09   38.1   0.1    5.9  6  PF13243.1  Prenyltransferase-like
    1.4e-22   80.1   7.0    3.9e-10   40.0   0.1    5.0  5  PF13249.1  Prenyltransferase-like
    2.3e-07   30.1   0.4      0.061   12.3   0.0    5.2  6  PF09492.5  Pectic acid lyase


Domain annotation for each model (and alignments):
>> PF00432.16  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.2   0.00096       3.3      13      29 ..     291     306 ..     290     312 .. 0.87
   2 !   27.5   0.0   4.2e-10   1.4e-06      11      43 ..     339     371 ..     334     372 .. 0.95
   3 ?    3.8   0.0     0.011        38      10      21 ..     725     736 ..     719     774 .. 0.90
   4 !   27.5   1.1   4.2e-10   1.4e-06       9      44 .]     802     836 ..     798     836 .. 0.90
   5 !   46.6   0.1   4.6e-16   1.6e-12       2      41 ..     844     892 ..     844     893 .. 0.98

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00096
                  HSH-----BS-TCCCCS CS
   PF00432.16  13 cQnpdGGwggrpgsesd 29 
                   Q++dG ++g++g++ +
  MMETSP0890-20130614|39946_1 291 LQCEDGHFAGDYGGP-H 306
                  699**********97.4 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 4.2e-10
                  HHHSH-----BS-TCCCCSCCCHHHHHHHHHHH CS
   PF00432.16  11 lscQnpdGGwggrpgsesdtyytywalaaLall 43 
                  +++Q++dGGwg + +s+s+++++  +++aL ll
  MMETSP0890-20130614|39946_1 339 KNHQQADGGWGTHIESPSTMFGSVLVYTALRLL 371
                  579***************************997 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
                  HHHHSH-----B CS
   PF00432.16  10 LlscQnpdGGwg 21 
                  +l  Qn dGGw+
  MMETSP0890-20130614|39946_1 725 ILTLQNHDGGWA 736
                  8999*******8 PP

  == domain 4    score: 27.5 bits;  conditional E-value: 4.2e-10
                  HHHHHSH-----BS-TCCCCSCCCHHHHHHHHHHHH CS
   PF00432.16   9 fLlscQnpdGGwggrpgsesdtyytywalaaLallG 44 
                  fL+s+Q++dG+w+g++g + +ty  ++++ +L + G
  MMETSP0890-20130614|39946_1 802 FLKSIQRKDGSWYGSWGCC-FTYAVWFGIEGLVATG 836
                  9**************7777.***********98765 PP

  == domain 5    score: 46.6 bits;  conditional E-value: 4.6e-16
                  HHHHHHHHHHHHSH-----BS-TCC.........CCSCCCHHHHHHHHH CS
   PF00432.16   2 dvekavdfLlscQnpdGGwggrpgs.........esdtyytywalaaLa 41 
                  +v+ka+ fL+s+Q+ dGGwg+  +s         +s++++t+wal++L+
  MMETSP0890-20130614|39946_1 844 HVQKACTFLISKQRSDGGWGETFEScfdkrysdgPSHVVNTAWALLGLM 892
                  79**********************************************8 PP

>> PF13243.1  Prenyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0057        19      40      72 ..     273     306 ..     264     333 .. 0.76
   2 !   15.8   0.0   2.6e-06     0.009      12     104 ..     292     393 ..     292     397 .. 0.56
   3 ?   -1.8   0.0       0.8   2.7e+03      30      59 ..     613     643 ..     599     644 .. 0.68
   4 !    7.5   0.0    0.0011       3.7       3      21 ..     720     739 ..     718     787 .. 0.68
   5 !   38.1   0.1   3.1e-13   1.1e-09       7      70 ..     802     867 ..     797     893 .. 0.81
   6 !   14.9   0.0   5.2e-06     0.018      28      80 ..     883     934 ..     869     942 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0057
    PF13243.1  40 gdaavdeaikkavdwlldqqqedGgfgyd.gaee 72 
                  ++++v +a+ k++ ++ + q edG f +d g+ +
  MMETSP0890-20130614|39946_1 273 KEDPVFSALTKGLTFYQRLQCEDGHFAGDyGGPH 306
                  56688899*******************9965554 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.6e-06
    PF13243.1  12 QnedGsWkynsgddvsvtaallralaaa..gdaavdeaikkavd.wlldqqqedGgfgyd..gaeeay...stataiallllyevagddek.lergvewilk 104
                  Q edG + + +g+  +   +l+ a   +  +++  ++a ++a++ +++++qq+dGg+g +  + ++++      ta+ lll  ++++++++ +  ++++i +
  MMETSP0890-20130614|39946_1 292 QCEDGHFAGDYGGPHFLSPGLVIAWYVLgkREELLNQAQRQAMAlYYKNHQQADGGWGTHieSPSTMFgsvLVYTALRLLLADGFDPENDAsAAAALRFIRT 393
                  5677777777775433333333333333003444555556777659999*********99743333223323456677777777777444426677777655 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.8
    PF13243.1  30 aallralaaagda.avdeaikkavdwlldqq 59 
                  +a++++  ++gd+  +++ +++a+++l ++q
  MMETSP0890-20130614|39946_1 613 FAQALVESRLGDEpCYRDCAQRAFEFLDKTQ 643
                  3344444444555589999999999998776 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0011
    PF13243.1   3 raveyilntQnedGsW.kyn 21 
                   av++il  Qn dG+W +y+
  MMETSP0890-20130614|39946_1 720 EAVNVILTLQNHDGGWaTYE 739
                  799*************6233 PP

  == domain 5    score: 38.1 bits;  conditional E-value: 3.1e-13
    PF13243.1   7 yilntQnedGsWkynsgddvsvtaall.ralaaag.daavdeaikkavdwlldqqqedGgfgydga 70 
                  ++ + Q++dGsW++++g  ++ ++++    l a+g d++ ++ ++ka+ +l+++q+ dGg+g + +
  MMETSP0890-20130614|39946_1 802 FLKSIQRKDGSWYGSWGCCFTYAVWFGiEGLVATGeDPETSRHVQKACTFLISKQRSDGGWGETFE 867
                  68899************999999999944555555255************************8743 PP

  == domain 6    score: 14.9 bits;  conditional E-value: 5.2e-06
    PF13243.1  28 vtaallralaaagda..avdeaikkavdwlldqqqedGgfgydgaeeaystatai 80 
                   ta++   l  ++++  +   a+++++d+ll+ q+ +G +  +g + ++++a +i
  MMETSP0890-20130614|39946_1 883 NTAWA---LLGLMAGhcTDINAVDRGMDYLLHAQESSGDWPQQGISGVFNRACGI 934
                  34444...44443332244569********************9998888776655 PP

>> PF13249.1  Prenyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   3.6e-07    0.0012       7     102 ..     291     392 ..     286     403 .. 0.65
   2 !   10.3   0.0   0.00019      0.65      66     112 ..     670     736 ..     584     737 .. 0.54
   3 !   10.4   0.0   0.00017      0.57      11      64 ..     673     738 ..     663     779 .. 0.64
   4 !   40.0   0.1   1.1e-13   3.9e-10       1     112 [.     722     863 ..     722     864 .. 0.74
   5 !   37.2   0.1   8.1e-13   2.8e-09       3      81 ..     851     938 ..     850     950 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.6e-07
    PF13249.1   7 qQnpdGgwgaagqesdvasTalallaLaalgete....d..rdkvegldwllsqqnedGgfgssgagneadlsttaaalallellggtkd....keavekavdyll 102
                   Q +dG ++++  ++++ s +l+++ +   g +e    +  r+++  + + +++q+ dGg+g+   ++++++  ++++ ++l+ll  + +    ++ +  a+++++
  MMETSP0890-20130614|39946_1 291 LQCEDGHFAGDYGGPHFLSPGLVIAWYVL-GKREellnQaqRQAM--ALYYKNHQQADGGWGTHI-ESPSTMFGSVLVYTALRLLLADGFdpenDASAAAALRFIR 392
                  699*******8789****99999998844.555524442335555..7788888888******75.4555555555555555555444442224444445555655 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00019
    PF13249.1  66 a...................gneadlsttaaalallellggtkd.keavekavdyllstQnpdGgwr 112
                                        ++ l +++a+ ++l   ++++   + + +av+ +l  Qn+dGgw 
  MMETSP0890-20130614|39946_1 670 HvskggwpfstsahgwpisdCTAEGLKSVLAMQRGLDCIKDDSVsVKRLSEAVNVILTLQNHDGGWA 736
                  0444444444443333333322222444444444444444444477888889999999999999996 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00017
    PF13249.1  11 dGgwgaa...gqesdvasTalallaLaalgeted...rdkve......gldwllsqqnedGgfgss 64 
                   Ggw ++   +  +  + Ta  l +  a+++  d    d+v+      +++ +l++qn+dGg+++ 
  MMETSP0890-20130614|39946_1 673 KGGWPFStsaHGWPISDCTAEGLKSVLAMQRGLDcikDDSVSvkrlseAVNVILTLQNHDGGWATY 738
                  566666555555566666666666666666666555433333444446667777777777777665 PP

  == domain 4    score: 40.0 bits;  conditional E-value: 1.1e-13
    PF13249.1   1 lewLlsqQnpdGgwgaa....gq..................esdvasTalallaLaalgeted....rdkve........gldwllsqqnedGgfgssgagneadlsttaaalallellggtkd.keavekavdyllstQnpdGgwr 112
                  ++ +l  Qn dGgw+ +    g+                  +s+v  ++++ +aL a  +  +    +   +        g  +l+s q++dG++ +s++     +++++ ++ +l + g++++ ++ v+ka  +l+s+Q  dGgw+
  MMETSP0890-20130614|39946_1 722 VNVILTLQNHDGGWATYennrGYgwyewlnpsevfgdimidYSYVECSMACATALRAFIDAFPshtrS---SeillalgrGNTFLKSIQRKDGSWYGSWG--CCFTYAVWFGIEGLVATGEDPEtSRHVQKACTFLISKQRSDGGWG 863
                  578999*********65543311555666677777777777666655555555554444433321123...1345888899****************974..457999**************999*********************8 PP

  == domain 5    score: 37.2 bits;  conditional E-value: 8.1e-13
    PF13249.1   3 wLlsqQnpdGgwgaa..........gqesdvasTalallaLaalgetedrdkve.gldwllsqqnedGgfgssgagneadlsttaaalal 81 
                  +L+s+Q++dGgwg++          + +s+v  Ta+all L ++g+ +d+++v  g+d+ll  q+++G +  +g ++    +++ ++ ++
  MMETSP0890-20130614|39946_1 851 FLISKQRSDGGWGETfescfdkrysDGPSHVVNTAWALLGL-MAGHCTDINAVDrGMDYLLHAQESSGDWPQQGISGV-FNRACGITYTA 938
                  799**********87766666655566*************9.77****98888888**************99988764.46666665555 PP

>> PF09492.5  Pectic acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1   3.7e+03      56      83 ..     273     300 ..     267     303 .. 0.71
   2 ?    0.3   0.0     0.084   2.9e+02      46      80 ..     611     648 ..     603     668 .. 0.70
   3 ?    3.0   0.0     0.012        41      64      91 ..     718     744 ..     691     761 .. 0.82
   4 ?   -0.2   0.0      0.12   4.1e+02      43      85 ..     774     817 ..     769     825 .. 0.78
   5 !    6.0   0.0    0.0015         5      56      87 ..     837     868 ..     829     878 .. 0.80
   6 !   12.3   0.0   1.8e-05     0.061      62      84 ..     900     935 ..     895     956 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.1
                  -GGHHHHHHH---HHHHHHS------BS CS
    PF09492.5  56 kdekykdaaekgldyllaaqypnGGwpq 83 
                  k++ + +a++kgl++  + q + G +  
  MMETSP0890-20130614|39946_1 273 KEDPVFSALTKGLTFYQRLQCEDGHFAG 300
                  4555667888888888888888887766 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.084
                  HHHHHHHHHS...-GGHHHHHHH---HHHHHHS----- CS
    PF09492.5  46 kfLarvyqat...kdekykdaaekgldyllaaqypnGG 80 
                  +f a++  ++    ++ y+d+a++++++l + q  + +
  MMETSP0890-20130614|39946_1 611 SFFAQALVESrlgDEPCYRDCAQRAFEFLDKTQILSSA 648
                  56666666655545668999999999999888866555 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.012
                  HH---HHHHHHS------BSSSS----- CS
    PF09492.5  64 aekgldyllaaqypnGGwpqvyPlkkgY 91 
                  + ++++ +l+ q   GGw  +  +++gY
  MMETSP0890-20130614|39946_1 718 LSEAVNVILTLQNHDGGWATY-ENNRGY 744
                  67899*************865.666666 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHHS.-GGHHHHHHH---HHHHHHS------BSSS CS
    PF09492.5  43 teikfLarvyqat.kdekykdaaekgldyllaaqypnGGwpqvy 85 
                  t+++  ++++ ++ +++++  a+ +g ++l + q + G w+ ++
  MMETSP0890-20130614|39946_1 774 TALRAFIDAFPSHtRSSEILLALGRGNTFLKSIQRKDGSWYGSW 817
                  556666665544437789999*******************9876 PP

  == domain 5    score: 6.0 bits;  conditional E-value: 0.0015
                  -GGHHHHHHH---HHHHHHS------BSSSS- CS
    PF09492.5  56 kdekykdaaekgldyllaaqypnGGwpqvyPl 87 
                  +d++ +  ++k+ ++l++ q + GGw   + +
  MMETSP0890-20130614|39946_1 837 EDPETSRHVQKACTFLISKQRSDGGWGETFES 868
                  566778889*****************998865 PP

  == domain 6    score: 12.3 bits;  conditional E-value: 1.8e-05
                  HHHH---HHHHHHS------BS.............S CS
    PF09492.5  62 daaekgldyllaaqypnGGwpq.............v 84 
                  +a+++g+dyll+aq ++G wpq              
  MMETSP0890-20130614|39946_1 900 NAVDRGMDYLLHAQESSGDWPQqgisgvfnracgiT 935
                  699*******************66666555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       282  (0.0206261); expected 273.4 (0.02)
Passed bias filter:                      225  (0.016457); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.31u 0.33s 00:00:01.64 Elapsed: 00:00:01.38
# Mc/sec: 1684.40
//
Query:       MMETSP0890-20130614|39948_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   10.7   0.0       0.13   10.7   0.0    1.1  1  PF02102.10 Deuterolysin metalloprotease (M35) family


Domain annotation for each model (and alignments):
>> PF02102.10  Deuterolysin metalloprotease (M35) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.4e-06      0.13     203     230 ..      32      59 ..       2      76 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.4e-06
   PF02102.10 203 aasaaesGssskfeeyfkttssstrtsv 230
                  +++  e+Gs+ +fee+fkt++ +   +v
  MMETSP0890-20130614|39948_1  32 TSTFCEAGSEHRFEEFFKTAELTLANAV 59 
                  4566899************987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 267.65
//
Query:       MMETSP0890-20130614|39953_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.037   13.7   0.0    1.4  1  PF01507.14 Phosphoadenosine phosphosulfate reductase family
      0.041   13.3   0.0      0.054   12.9   0.0    1.2  1  PF01707.11 Peptidase family C9
      0.095   12.4   0.2       0.17   11.6   0.1    1.5  1  PF04376.8  Arginine-tRNA-protein transferase, N terminus


Domain annotation for each model (and alignments):
>> PF01507.14  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.1e-06     0.037     136     169 ..      17      50 ..       9      54 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.1e-06
                  TTT--HHHHHHHHHHCT--B-CCCC--------C CS
   PF01507.14 136 llnWteedvwqyilrenipynpLydqgfrsiGcv 169
                  +++ ++++v+q+++  +++ n+L  +gfr++G  
  MMETSP0890-20130614|39953_1  17 IAEVSQQNVFQLLQLFGVEENELVGRGFRRVGTA 50 
                  678899**************************76 PP

>> PF01707.11  Peptidase family C9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05     0.054      92     141 ..      61     111 ..      40     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-05
   PF01707.11  92 eiCtklfGldldsGlfskpsvp.ltyennhWdnspggkmyGfnkevakele 141
                   +C ++f  d ++Gl ++p ++ l+y +  +d++   +m+ ++ + ++e++
  MMETSP0890-20130614|39953_1  61 RFCAQFFDPDSTTGLAARPDIThLKYYEPFFDDRFPDRMHTYEISKTREVH 111
                  68******************96599*****************988888774 PP

>> PF04376.8  Arginine-tRNA-protein transferase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.6e-05      0.17      36      62 ..      36      63 ..       4      66 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.6e-05
    PF04376.8 36 ydeLidrGFRRsgkflYkpdc.rsCcac 62
                  +eL+ rGFRR g+   ++     C+ c
  MMETSP0890-20130614|39953_1 36 ENELVGRGFRRVGTASSRTLRqSVCRFC 63
                 579************9999886667666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       333  (0.0243563); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 604.45
//
Query:       MMETSP0890-20130614|39959_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-06   26.9   0.0    4.8e-06   26.2   0.0    1.5  1  PF00271.26 Helicase conserved C-terminal domain
      0.002   17.7  10.3     0.0046   16.5   7.2    1.6  1  PF13639.1  Ring finger domain
  ------ inclusion threshold ------
      0.022   14.2   9.0      0.054   13.0   6.3    1.7  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
      0.023   14.4   9.6      0.041   13.5   6.6    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.4e-09   4.8e-06      18      78 .]     169     231 ..     124     231 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.4e-09
                  -HHHHHHHHHHHHTTTS..SEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26  18 pqnereeileqfnagks..kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  ++++ ++i+ +f+++      ++  + a+ G++++++n+V+++++   +++ +Q+iGR++R g
  MMETSP0890-20130614|39959_1 169 NTKNWQDIIFRFHSDPMlsILVLNVRTAAAGLNITAANHVFFTHPLLHKSDELQAIGRCHRLG 231
                  555666667777776666566778899**********************************76 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   7.2   1.3e-06    0.0046       2      45 ..      48      93 ..      47      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.3e-06
    PF13639.1  2 eCaiCldelsegeevvrlpCgHvfHeeCldewlrssn..sCPlCrk 45
                 +C  Cl+ l  ++++v   C+H  +++C+++ +++ +  +C lCr+
  MMETSP0890-20130614|39959_1 48 TCMFCLEHLPPSRRAVLSICSHELCCNCVEKEIKRAGgiKCGLCRE 93
                 8********7777766666**************996445******6 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.3   1.6e-05     0.054       1      41 []      49      91 ..      49      91 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
                 -TTTSSS-SSEE...BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20  1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41
                 C  Cle +       l+ C H++C++C++k +k  +  kC lC
  MMETSP0890-20130614|39959_1 49 CMFCLEHLPPSRraVLSICSHELCCNCVEKEIKRAGGIKCGLC 91
                 777887765555557899***************999999**99 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   6.6   1.2e-05     0.041       2      45 ..      46      92 ..      45      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.2e-05
    PF13923.1  2 rfsCpiCleel..enpviltpCgHlyCkkCieqwleks.kkkCPiCr 45
                 +++C  Cle+l  +  ++l  C H +C +C+e+ ++++   kC +Cr
  MMETSP0890-20130614|39959_1 46 KETCMFCLEHLppSRRAVLSICSHELCCNCVEKEIKRAgGIKCGLCR 92
                 689******99554477899*************99998888*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       654  (0.047835); expected 273.4 (0.02)
Passed bias filter:                      445  (0.0325483); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.85
# Mc/sec: 876.78
//
Query:       MMETSP0890-20130614|39963_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-30  102.8   0.0    1.6e-29  102.1   0.0    1.3  1  PF03109.11 ABC1 family


Domain annotation for each model (and alignments):
>> PF03109.11  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.2e-33   1.6e-29       2     118 ..       9     126 ..       8     127 .. 0.95

  Alignments for each domain:
  == domain 1    score: 102.1 bits;  conditional E-value: 1.2e-33
   PF03109.11   2 elgkpveevFaefdeePlAaASiaQVHrAvlksgeeVavKvqrpgvkkriksDlkllkllakllkkiskearldleelvdelskelaeeldfkrEAknaekfrenfakl.kevkvPkv 118
                  elg+  +++Fae+d+ePlA+ASiaQVHrA+l++g+ VavKv +pg++ ri+  +  l++ ++l++ +++  ++d+++l+ e+++ ++ eld+ +EA n +++++ ++++   v+ P+v
  MMETSP0890-20130614|39963_1   9 ELGACAQDIFAEWDPEPLASASIAQVHRARLSDGRLVAVKVMHPGLETRITGSMIALRMAFRLASIFFPTVAHDWTWLLPEFEDAIQLELDLVQEAVNCTRTKSLLRDFkLPVDTPQV 126
                  789999******************************************************************************************************9446777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.71
# Mc/sec: 1491.82
//
Query:       MMETSP0890-20130614|39965_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-27   94.3  13.9    2.4e-11   43.7   0.2    4.7  5  PF12796.2  Ankyrin repeats (3 copies)
    2.9e-22   78.0  12.7    2.6e-07   30.5   0.2    6.3  6  PF13857.1  Ankyrin repeats (many copies)
    3.5e-18   63.7   2.5      2e-06   27.3   0.0    7.2  6  PF13606.1  Ankyrin repeat
    3.4e-17   61.7   9.5    1.7e-10   40.3   2.8    2.7  2  PF13414.1  TPR repeat
    8.4e-16   56.7  17.3    6.2e-08   31.9   0.0    6.3  6  PF00023.25 Ankyrin repeat
    2.6e-15   56.3   2.1    0.00029   21.1   0.0    5.5  5  PF13637.1  Ankyrin repeats (many copies)
    1.7e-13   49.4   3.3    4.5e-07   29.0   0.0    3.4  4  PF00515.23 Tetratricopeptide repeat
    1.3e-10   40.2   6.6    1.4e-05   24.5   0.1    3.5  3  PF07719.12 Tetratricopeptide repeat
    3.7e-07   29.3   1.3      0.027   14.1   0.0    3.7  4  PF13181.1  Tetratricopeptide repeat
      4e-07   29.6   0.6       0.22   11.7   0.1    3.9  3  PF13431.1  Tetratricopeptide repeat
    2.8e-06   27.7  11.0      0.013   16.0   1.3    3.6  3  PF13432.1  Tetratricopeptide repeat
    5.6e-06   26.4  13.0      0.029   14.8   0.8    5.5  5  PF13428.1  Tetratricopeptide repeat
    0.00033   20.4   1.7       0.71    9.7   0.0    3.0  2  PF13424.1  Tetratricopeptide repeat
     0.0016   18.2   0.6     0.0058   16.4   0.4    1.9  1  PF06470.8  SMC proteins Flexible Hinge Domain
  ------ inclusion threshold ------
       0.88    9.3   4.9        7.5    6.4   1.4    3.4  3  PF04212.13 MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.2e-09   3.9e-06       2      87 ..      11     106 ..      10     107 .. 0.85
   2 !   43.7   0.2   2.6e-14   2.4e-11      13      67 ..      94     151 ..      92     159 .. 0.93
   3 !   22.5   0.1     1e-07   9.1e-05      41      85 ..     159     203 ..     157     206 .. 0.95
   4 !   23.8   2.1   4.2e-08   3.8e-05       1      85 [.     181     273 ..     181     276 .. 0.91
   5 ?   -2.4   0.1       6.2   5.7e+03      34      40 ..     320     326 ..     298     360 .. 0.60

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.2e-09
    PF12796.2   2 hlAaengnlelvklLle.kgadvdl........getpLhlAaeagnleivklLleagadv.nakdkegntpLhlAvrnghlelvklLlekgadvnl 87 
                  +  a++g++  +++ ++ ++++ +         ++ +Lh  a +++ +++++ le++ ++ n+ d+ g tpL lA+++g +  +++Lle+ a +n+
  MMETSP0890-20130614|39965_1  11 FESAKRGDIAGMEKVISrAEDKKNAlsayrdgnRRHVLHFTAVSDSAKAIRWVLEKCPELmNTPDDTGTTPLALAASQGLTTSCDVLLEASAALNA 106
                  667899999999999985566666688887754444*********************99659999*************************998875 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 2.6e-14
    PF12796.2  13 vklLlekgadvdl...getpLhlAaeagnleivklLleagadvnakdkegntpLhlAv 67 
                  ++ Lle+ a ++    g tpLh Aa++gn   v+ L++ag+dvnak k   tpLh+A 
  MMETSP0890-20130614|39965_1  94 CDVLLEASAALNAdlsGATPLHRAAQSGNAHLVERLVKAGCDVNAKAKASGTPLHWAS 151
                  6789999999999999*****************************************6 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 1e-07
    PF12796.2  41 ivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                  +v++Lle gad  a+d++g tpL+lA+  g+++ v  L ++gad 
  MMETSP0890-20130614|39965_1 159 AVEALLELGADASATDERGLTPLILAAAVGNAKGVVALANAGADA 203
                  699****************************************96 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 4.2e-08
    PF12796.2   1 LhlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakd....kegntpLhlAvrnghlelvklLlekgadv 85 
                  L lAa  gn++ v  L ++gad  l    g t+ h++a+ag+  ++k++l+++ +         +eg+++   A+ + ++++++lL e+g+ +
  MMETSP0890-20130614|39965_1 181 LILAAAVGNAKGVVALANAGADAGLlvsgGATVAHICADAGDSHALKAILNKCVNGTKAAmaidAEGRNAADTAMAADRQDCLRLLEERGIRP 273
                  789************************************************87766433356779*********************9999876 PP

  == domain 5    score: -2.4 bits;  conditional E-value: 6.2
    PF12796.2  34 aeagnle 40 
                  ++agn++
  MMETSP0890-20130614|39965_1 320 LAAGNHD 326
                  2223332 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.015        14       8      36 ..      36      64 ..      30      71 .. 0.86
   2 !   17.1   0.0   4.8e-06    0.0044       4      40 ..      66     102 ..      63     109 .. 0.79
   3 !   30.5   0.2   2.9e-10   2.6e-07      13      56 .]     107     150 ..     101     150 .. 0.93
   4 !   22.6   0.2   8.5e-08   7.8e-05       1      49 [.     163     210 ..     163     212 .. 0.93
   5 !    8.1   0.2    0.0031       2.9      15      56 .]     209     254 ..     207     254 .. 0.82
   6 ?    0.6   0.0      0.71   6.5e+02      10      35 ..     241     266 ..     235     270 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.015
    PF13857.1  8 dvnatdeggntpLhlAakggalevvrlLl 36
                    ++d++++++Lh++a   ++ ++r+ l
  MMETSP0890-20130614|39965_1 36 LSAYRDGNRRHVLHFTAVSDSAKAIRWVL 64
                 5567899999*****************98 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.8e-06
    PF13857.1   4 hgpadvnatdeggntpLhlAakggalevvrlLlapga 40 
                  + p+  n+ d +g+tpL lAa++g ++ ++ Ll++ a
  MMETSP0890-20130614|39965_1  66 KCPELMNTPDDTGTTPLALAASQGLTTSCDVLLEASA 102
                  556666999************************4433 PP

  == domain 3    score: 30.5 bits;  conditional E-value: 2.9e-10
    PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  d++g tpLh Aa  g++++v+ L+++g+d n++ +   t+l++A
  MMETSP0890-20130614|39965_1 107 DLSGATPLHRAAQSGNAHLVERLVKAGCDVNAKAKASGTPLHWA 150
                  78899************************************998 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 8.5e-08
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdg 49 
                  Lle g ad+ atde+g tpL lAa  g++  v  L ++gad++l  s g
  MMETSP0890-20130614|39965_1 163 LLELG-ADASATDERGLTPLILAAAVGNAKGVVALANAGADAGLLVSGG 210
                  8999*.9999********************************9987766 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.0031
    PF13857.1  15 ggntpLhlAakggalevvrlLl....apgadlnlrdsdgltaldlA 56 
                  gg t+ h+ a +g++++++ +l    +   ++ + d++g++a d A
  MMETSP0890-20130614|39965_1 209 GGATVAHICADAGDSHALKAILnkcvNGTKAAMAIDAEGRNAADTA 254
                  678*******************777777777777777777777766 PP

  == domain 6    score: 0.6 bits;  conditional E-value: 0.71
    PF13857.1  10 natdeggntpLhlAakggalevvrlL 35 
                  +a d +g+++  +A  + +++++rlL
  MMETSP0890-20130614|39965_1 241 MAIDAEGRNAADTAMAADRQDCLRLL 266
                  56677888999999999999999987 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.13   1.2e+02       1      26 [.      43      68 ..      43      71 .. 0.89
   2 !    8.2   0.0    0.0032       2.9       2      30 .]      78     106 ..      77     106 .. 0.92
   3 !   27.3   0.0   2.1e-09     2e-06       2      30 .]     110     138 ..     109     138 .. 0.95
   4 !    7.5   0.0    0.0054       4.9       4      28 ..     145     170 ..     144     172 .. 0.76
   5 ?    6.6   0.0     0.011       9.8       2      27 ..     177     202 ..     176     205 .. 0.94
   6 ?    3.0   0.0      0.16   1.5e+02       2      27 ..     210     235 ..     209     238 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.13
    PF13606.1  1 nGnTpLhlAasngrielveaLlenga 26
                 n++++Lh  a + + +++++ le+++
  MMETSP0890-20130614|39965_1 43 NRRHVLHFTAVSDSAKAIRWVLEKCP 68
                 6799****9999**********9987 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0032
    PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                  G TpL lAas+g +  ++ Lle+ a +na
  MMETSP0890-20130614|39965_1  78 GTTPLALAASQGLTTSCDVLLEASAALNA 106
                  78********************9998885 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 2.1e-09
    PF13606.1   2 GnTpLhlAasngrielveaLlengadina 30 
                  G TpLh Aa++g+  lve L+++g+d+na
  MMETSP0890-20130614|39965_1 110 GATPLHRAAQSGNAHLVERLVKAGCDVNA 138
                  67*************************96 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0054
    PF13606.1   4 TpLhlAasngrie.lveaLlengadi 28 
                  TpLh+A    +   +veaLle gad 
  MMETSP0890-20130614|39965_1 145 TPLHWASGDESGGvAVEALLELGADA 170
                  9999996644433469********96 PP

  == domain 5    score: 6.6 bits;  conditional E-value: 0.011
    PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                  G TpL lAa  g+ + v aL ++gad
  MMETSP0890-20130614|39965_1 177 GLTPLILAAAVGNAKGVVALANAGAD 202
                  89*********************999 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.16
    PF13606.1   2 GnTpLhlAasngrielveaLlengad 27 
                  G T+ h+ a  g   +++a l+++++
  MMETSP0890-20130614|39965_1 210 GATVAHICADAGDSHALKAILNKCVN 235
                  56999****************99876 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   2.8   1.8e-13   1.7e-10       2      65 ..     308     372 ..     307     383 .. 0.81
   2 !   23.7   0.2   2.7e-08   2.5e-05       5      43 ..     388     426 ..     384     436 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.8e-13
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgk.dyeeAledyekAl 65 
                  +A + k  Gn+++ +g++d Ai+ay+kA+eld  n + y+n+A+a++ l + ++ +    +e+Al
  MMETSP0890-20130614|39965_1 308 KANECKSTGNNALAAGNHDAAIAAYSKAIELDATNKVFYSNRAAALISLAEkEPAKGQSLLEQAL 372
                  5888999******************************************8512333344455555 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 2.7e-08
    PF13414.1   5 alkelGnalfkegdydeAieayekAleldpnnaelyynl 43 
                   ++++Gnal+ +g++++A  a+  Al+ldpnna+l ++l
  MMETSP0890-20130614|39965_1 388 GHFRKGNALLLLGRFEDAAHAFWDALRLDPNNAQLKAAL 426
                  589******************************997765 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.9   4.5e+03       6      26 ..      48      68 ..      45      72 .. 0.82
   2 !   11.7   0.1   0.00018      0.16       2      30 ..      78     106 ..      77     107 .. 0.96
   3 !   31.9   0.0   6.9e-11   6.2e-08       2      31 ..     110     139 ..     109     141 .. 0.95
   4 !    8.8   0.1    0.0014       1.3       4      32 ..     145     174 ..     145     175 .. 0.92
   5 !   11.7   0.3   0.00018      0.16       2      27 ..     177     202 ..     176     205 .. 0.95
   6 ?   -0.9   0.1       1.7   1.5e+03       2      25 ..     210     233 ..     209     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.9
                 HHHHHHTTHHHHHHHHHHTTS CS
   PF00023.25  6 LHlAalrgnlevvklLlsqGA 26
                 LH  a +++++ +++ l+++ 
  MMETSP0890-20130614|39965_1 48 LHFTAVSDSAKAIRWVLEKCP 68
                 999999999999999988765 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00018
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlna 30 
                  G TPL lAa+ g +  +  Ll++ A lna
  MMETSP0890-20130614|39965_1  78 GTTPLALAASQGLTTSCDVLLEASAALNA 106
                  89************************998 PP

  == domain 3    score: 31.9 bits;  conditional E-value: 6.9e-11
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  G TPLH Aa++gn+  v+ L+++G+d+na+
  MMETSP0890-20130614|39965_1 110 GATPLHRAAQSGNAHLVERLVKAGCDVNAK 139
                  89**************************98 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.0014
                  BHHHHHHHTT.HHHHHHHHHHTTSSTTHBH CS
   PF00023.25   4 TPLHlAalrg.nlevvklLlsqGAdlnaqd 32 
                  TPLH+A+    +   v+ Ll+ GAd  a+d
  MMETSP0890-20130614|39965_1 145 TPLHWASGDEsGGVAVEALLELGADASATD 174
                  9******99999999**********99988 PP

  == domain 5    score: 11.7 bits;  conditional E-value: 0.00018
                  SCBHHHHHHHTTHHHHHHHHHHTTSS CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAd 27 
                  G TPL lAa  gn++ v  L ++GAd
  MMETSP0890-20130614|39965_1 177 GLTPLILAAAVGNAKGVVALANAGAD 202
                  99***********************9 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 1.7
                  SCBHHHHHHHTTHHHHHHHHHHTT CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqG 25 
                  G T  H++a  g+   +k  l+++
  MMETSP0890-20130614|39965_1 210 GATVAHICADAGDSHALKAILNKC 233
                  66777*******999999999865 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0055         5       2      45 ..      45      89 ..      44      98 .. 0.84
   2 !   20.4   0.0   5.2e-07   0.00048       3      41 ..     112     150 ..     110     157 .. 0.94
   3 !   21.1   0.0   3.2e-07   0.00029       3      46 ..     145     189 ..     144     197 .. 0.86
   4 ?    5.3   0.1      0.03        27      19      53 ..     195     229 ..     188     230 .. 0.83
   5 ?   -0.4   0.0       1.8   1.6e+03       3      26 ..     249     272 ..     247     274 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0055
    PF13637.1  2 ltaLhyaaisgrlelvklLlekgid.inrtdesGntaLhiAalrg 45
                 + +Lh  a s   +++++ lek ++  n  d+ G+t+L +Aa+ g
  MMETSP0890-20130614|39965_1 45 RHVLHFTAVSDSAKAIRWVLEKCPElMNTPDDTGTTPLALAASQG 89
                 6799*****************955537777999*****9999876 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 5.2e-07
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtdesGntaLhiA 41 
                  t+Lh+aa+sg+  lv+ L++ g d+n++ +   t+Lh A
  MMETSP0890-20130614|39965_1 112 TPLHRAAQSGNAHLVERLVKAGCDVNAKAKASGTPLHWA 150
                  89**************************99999****98 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 3.2e-07
    PF13637.1   3 taLhyaaisgrlel.vklLlekgidinrtdesGntaLhiAalrgn 46 
                  t+Lh+a  +    + v+ Lle g+d  +tde+G t+L++Aa  gn
  MMETSP0890-20130614|39965_1 145 TPLHWASGDESGGVaVEALLELGADASATDERGLTPLILAAAVGN 189
                  78999988888777899***********************98776 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.03
    PF13637.1  19 lLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                   L + g+d   + + G t  hi+a +g+ ++lk  
  MMETSP0890-20130614|39965_1 195 ALANAGADAGLLVSGGATVAHICADAGDSHALKAI 229
                  566778888888788*****************976 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 1.8
    PF13637.1   3 taLhyaaisgrlelvklLlekgid 26 
                   a + a+++ r ++++lL e+gi 
  MMETSP0890-20130614|39965_1 249 NAADTAMAADRQDCLRLLEERGIR 272
                  56677889999*****99777775 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   5.7e-07   0.00052       8      34 .]     316     342 ..     309     342 .. 0.85
   2 ?   -2.3   0.0       3.8   3.5e+03       4      14 ..     346     356 ..     345     362 .. 0.79
   3 ?   -2.6   0.0       4.9   4.5e+03      17      31 ..     368     382 ..     365     382 .. 0.76
   4 !   29.0   0.0   4.9e-10   4.5e-07       2      34 .]     387     419 ..     386     419 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.7e-07
                  HHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   8 GnaylklgkydeAleyyekALelnPnn 34 
                  Gn  l  g++d A+++y+kA+el+ +n
  MMETSP0890-20130614|39965_1 316 GNNALAAGNHDAAIAAYSKAIELDATN 342
                  5666789****************9765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.8
                  HHHHHHHHHHT CS
   PF00515.23   4 lynlGnaylkl 14 
                  + n+++a+ +l
  MMETSP0890-20130614|39965_1 346 YSNRAAALISL 356
                  89999998776 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 4.9
                  HHHHHHHHHHHHHHH CS
   PF00515.23  17 ydeAleyyekALeln 31 
                  +++Al++ + ++ ++
  MMETSP0890-20130614|39965_1 368 LEQALDDTNICIDID 382
                  689999987777765 PP

  == domain 4    score: 29.0 bits;  conditional E-value: 4.9e-10
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPnn 34 
                  k ++++Gna+l lg++++A  ++  AL+l+Pnn
  MMETSP0890-20130614|39965_1 387 KGHFRKGNALLLLGRFEDAAHAFWDALRLDPNN 419
                  789*****************************8 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   2.3e-06    0.0021       7      34 .]     315     342 ..     309     342 .. 0.89
   2 ?   -1.6   0.1       3.5   3.2e+03       7      28 ..     351     372 ..     346     373 .. 0.70
   3 !   24.5   0.1   1.5e-08   1.4e-05       1      34 []     386     419 ..     386     419 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.3e-06
                  HHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   7 lGlayyklgdyeeAleafekAleldPnn 34 
                   G+ ++++g+++ A++a+ kA+eld +n
  MMETSP0890-20130614|39965_1 315 TGNNALAAGNHDAAIAAYSKAIELDATN 342
                  5999********************9765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 3.5
                  HHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafekAl 28 
                   +l+ ++ +++++   ++e+Al
  MMETSP0890-20130614|39965_1 351 AALISLAEKEPAKGQSLLEQAL 372
                  5667777777888888888887 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 1.5e-08
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++++++ G+a++ lg++e+A++af  Al+ldPnn
  MMETSP0890-20130614|39965_1 386 PKGHFRKGNALLLLGRFEDAAHAFWDALRLDPNN 419
                  578******************************8 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         4   3.7e+03      16      25 ..      31      40 ..      28      43 .. 0.84
   2 ?   -1.9   0.0       3.8   3.4e+03       8      28 ..     214     234 ..     214     235 .. 0.84
   3 !   11.5   0.1   0.00019      0.17      15      32 ..     323     340 ..     319     343 .. 0.88
   4 !   14.1   0.0   2.9e-05     0.027       3      34 .]     388     419 ..     386     419 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 4
                 -HHHHHHHHH CS
    PF13181.1 16 dydkAkeyle 25
                 d+++A+++++
  MMETSP0890-20130614|39965_1 31 DKKNALSAYR 40
                 8899999997 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.8
                  --HHHHTT-HHHHHHHHH--- CS
    PF13181.1   8 GdiYrqlGdydkAkeylekal 28 
                  ++i ++ Gd ++ k+ l+k++
  MMETSP0890-20130614|39965_1 214 AHICADAGDSHALKAILNKCV 234
                  578889999999899999997 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00019
                  T-HHHHHHHHH---HHHH CS
    PF13181.1  15 GdydkAkeylekalelkp 32 
                  G++d+A++++ ka+el+ 
  MMETSP0890-20130614|39965_1 323 GNHDAAIAAYSKAIELDA 340
                  9***************97 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 2.9e-05
                  -TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkprn 34 
                   ++++G +++ lG+++ A  +++ al l+p+n
  MMETSP0890-20130614|39965_1 388 GHFRKGNALLLLGRFEDAAHAFWDALRLDPNN 419
                  689***************************76 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00024      0.22       1      24 [.     331     354 ..     331     372 .. 0.80
   2 !   10.0   0.0   0.00082      0.75       5      32 ..     378     405 ..     376     407 .. 0.95
   3 ?    3.7   0.0     0.088        80       3      14 ..     410     421 ..     408     424 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00024
    PF13431.1   1 lyekaleldPnnadaynnLAelll 24 
                  +y ka+eld +n ++y n+A +l 
  MMETSP0890-20130614|39965_1 331 AYSKAIELDATNKVFYSNRAAALI 354
                  69******************9997 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00082
    PF13431.1   5 aleldPnnadaynnLAelllnnGdleeA 32 
                  ++++d + +  +++++++ll +G++e+A
  MMETSP0890-20130614|39965_1 378 CIDIDTDWPKGHFRKGNALLLLGRFEDA 405
                  89************************98 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.088
    PF13431.1   3 ekaleldPnnad 14 
                    al+ldPnna+
  MMETSP0890-20130614|39965_1 410 WDALRLDPNNAQ 421
                  579*******97 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.5   6.8e+03       3      12 ..      34      43 ..      15      45 .. 0.76
   2 !   15.7   0.4   1.8e-05     0.016       4      58 ..     316     372 ..     314     380 .. 0.70
   3 !   16.0   1.3   1.4e-05     0.013       1      40 [.     390     429 ..     389     436 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 7.5
    PF13432.1  3 lArallraGd 12
                 +A++++r+G+
  MMETSP0890-20130614|39965_1 34 NALSAYRDGN 43
                 5777777777 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.8e-05
    PF13432.1   4 ArallraGdydeAlaaleaalala..PeaaeallllaeallrlgrldeAaallraal 58 
                  ++++l+aG+ d+A+aa+++a++l+   +      + a + l+ +++++   ll++al
  MMETSP0890-20130614|39965_1 316 GNNALAAGNHDAAIAAYSKAIELDatNKVFYSNRAAALISLAEKEPAKGQSLLEQAL 372
                  789*********************664444444444444444466666666666655 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.4e-05
    PF13432.1   1 lalArallraGdydeAlaaleaalalaPeaaeallllaea 40 
                  +++++all +G++++A++a+ +al+l+P +a+ + +l +a
  MMETSP0890-20130614|39965_1 390 FRKGNALLLLGRFEDAAHAFWDALRLDPNNAQLKAALQDA 429
                  57899***********************999998887665 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0         1   9.6e+02       2      29 ..       2      31 ..       1      41 [. 0.72
   2 ?   -1.8   0.0         7   6.4e+03      20      33 ..      56      69 ..      53      72 .. 0.83
   3 !   12.8   0.6   0.00014      0.13      10      42 ..     318     350 ..     314     357 .. 0.85
   4 ?    1.5   0.1      0.63   5.7e+02       6      29 ..     348     373 ..     344     376 .. 0.72
   5 !   14.8   0.8   3.2e-05     0.029       5      41 ..     390     426 ..     386     429 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1
    PF13428.1  2 eallalaralla..lGdpdeAiallrrala 29
                 ea+++l  +++   +Gd ++ +++  ra  
  MMETSP0890-20130614|39965_1  2 EARRDLSGLFESakRGDIAGMEKVISRAED 31
                 67778877776422799******9999943 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 7
    PF13428.1 20 AiallrralalaPd 33
                  +++ r++l+++P+
  MMETSP0890-20130614|39965_1 56 SAKAIRWVLEKCPE 69
                 57889999999997 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00014
    PF13428.1  10 allalGdpdeAiallrralalaPddaealllLa 42 
                    la+G++d+Aia++ +a++l+ ++  ++ + a
  MMETSP0890-20130614|39965_1 318 NALAAGNHDAAIAAYSKAIELDATNKVFYSNRA 350
                  5789******************99987775555 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.63
    PF13428.1   6 alarall..alGdpdeAiallrrala 29 
                   +a+al+  a  +p+++  ll++al 
  MMETSP0890-20130614|39965_1 348 NRAAALIslAEKEPAKGQSLLEQALD 373
                  56777751155789999999999987 PP

  == domain 5    score: 14.8 bits;  conditional E-value: 3.2e-05
    PF13428.1   5 lalarallalGdpdeAiallrralalaPddaealllL 41 
                   + ++all lG++++A+ ++ +al+l+P++a++  +L
  MMETSP0890-20130614|39965_1 390 FRKGNALLLLGRFEDAAHAFWDALRLDPNNAQLKAAL 426
                  567899*************************998877 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   1.5    0.0013       1.1      12      73 ..     316     372 ..     313     373 .. 0.73
   2 !    9.7   0.0   0.00078      0.71      12      76 ..     352     416 ..     344     418 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0013
    PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                  +++ ++ g++d A++ y ka+el     d+   +  + +  a + la ++ ++   +le+Al
  MMETSP0890-20130614|39965_1 316 GNNALAAGNHDAAIAAYSKAIEL-----DATNKVFYSNRAAALISLAEKEPAKGQSLLEQAL 372
                  66677889999999999999998.....3455677777777777777777777777777777 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00078
    PF13424.1  12 alvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  al+ +++++  + ++l+e+al+      d + d+ +  +  +n++l lg++++A   + +Al+++
  MMETSP0890-20130614|39965_1 352 ALISLAEKEPAKGQSLLEQALDDTNICIDIDTDWPKGHFRKGNALLLLGRFEDAAHAFWDALRLD 416
                  44445888999999***************999***********************9999999886 PP

>> PF06470.8  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   6.4e-06    0.0058      17     115 ..     238     383 ..     233     383 .. 0.97

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.4e-06
    PF06470.8  17 gyekAveaalgnrlqaivvedeetakkiieflkkanagratflpldrikqknssdskneve...............................................rpggavplidlveypdeklrkalryllgdtlvvdslde 115
                  +++ A++a   n++++    d ++  +++e+   + +g ++ +p  +i+  + ++ k++ +                                               ++++a  li+l e +++k + +l+++l dt ++ ++d+
  MMETSP0890-20130614|39965_1 238 KAAMAIDAEGRNAADTAMAADRQDCLRLLEERGIRPTGAVSTIPSTSIHESKQEEIKRPMIshrichdaakaneckstgnnalaagnhdaaiaayskaieldatnkvfYSNRAAALISLAEKEPAKGQSLLEQALDDTNICIDIDT 383
                  56789**************************99999*********************9999********************************************************************************99986 PP

>> PF04212.13  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.29   2.7e+02      18      31 ..      29      42 ..      20      73 .. 0.62
   2 ?    6.4   1.4    0.0082       7.5       4      34 ..     308     338 ..     305     338 .. 0.84
   3 ?   -1.7   0.0       2.6   2.4e+03      30      54 ..     404     429 ..     401     432 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.29
                 TT-HHHHHHHHHHH CS
   PF04212.13 18 agkyeeAlelYkeA 31
                 a ++  Al +Y+++
  MMETSP0890-20130614|39965_1 29 AEDKKNALSAYRDG 42
                 55666677777766 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0082
                  HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF04212.13   4 kAlelikkAveaDeagkyeeAlelYkeAlel 34 
                  kA e+ +++ +a  ag++++A+ +Y +A+el
  MMETSP0890-20130614|39965_1 308 KANECKSTGNNALAAGNHDAAIAAYSKAIEL 338
                  677777777777789**************95 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.6
                  HHHHHHHHHHHHC.TTHHCHHHHHHH CS
   PF04212.13  30 eAlelLlqalkye.pnperrealrqk 54 
                  +A++ +  al  + +n + + al++ 
  MMETSP0890-20130614|39965_1 404 DAAHAFWDALRLDpNNAQLKAALQDA 429
                  56666666777774455566667665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       421  (0.0307929); expected 273.4 (0.02)
Passed bias filter:                      264  (0.0193095); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.82
# Mc/sec: 1326.76
//
Query:       MMETSP0890-20130614|39981_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      194  (0.0141896); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 731.52
//
Query:       MMETSP0890-20130614|39983_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-08   32.6   0.0    8.9e-08   32.2   0.0    1.2  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   6.5e-12   8.9e-08     106     210 ..     105     202 ..      61     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 6.5e-12
                  E..EEE-GGGTS-EE----EE-EEEESS-B-.S----EEEE---------.......................-EEE----..............----........ CS
    PF05721.8 106 v.qpwHqDstflptdpeesvvgvwialedat.eenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                  + q+wH D ++++t  +es+ ++ i    ++ e  G++ f PGSH   ++++r+ l  + +++         + + vp  ++ Gd +lf+ r+lH++  N++ ++R 
  MMETSP0890-20130614|39983_1 105 QeQSWHIDGAHISTSKHESCHCLNIFTPLVHlEAGGGTEFRPGSHYLTRDLKRQFLLAKIHKTL--------RPPLVPT-LQLGDSILFDYRILHRGTKNSTGAPRP 202
                  3479*********999777766555555555055678**********99988877776666655........6666765.889*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       215  (0.0157256); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.79
# Mc/sec: 709.81
//
Query:       MMETSP0890-20130614|39984_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       483  (0.0353277); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 505.08
//
Query:       MMETSP0890-20130614|39986_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-90  302.9   0.0    6.6e-90  301.6   0.0    1.5  1  PF00012.15 Hsp70 protein
    3.4e-12   45.5   0.6    4.6e-09   35.1   0.1    3.0  2  PF06723.8  MreB/Mbl protein
    2.3e-06   26.6   0.0    0.00012   21.0   0.0    2.2  2  PF06406.6  StbA protein
    0.00051   19.7   0.5        2.8    7.6   0.0    3.2  3  PF14450.1  Cell division protein FtsA
    0.00074   18.7   0.0      0.037   13.1   0.0    2.3  2  PF01869.15 BadF/BadG/BcrA/BcrD ATPase family
    0.00085   18.3   0.1      0.068   12.1   0.0    2.5  3  PF01968.13 Hydantoinase/oxoprolinase
  ------ inclusion threshold ------
       0.13   11.0   0.0        5.3    5.7   0.0    2.2  2  PF13507.1  CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> PF00012.15  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.6   0.0   3.4e-93   6.6e-90       2     371 ..      22     416 ..      21     418 .. 0.90

  Alignments for each domain:
  == domain 1    score: 301.6 bits;  conditional E-value: 3.4e-93
                  EXEEXXXXEEBXEEEXXX................XEEEXXXTTXXSSEESEEEEXXX.SEEXXXCCCT...TTTTTGGGEEEXGGGTXXXBTTSTTHHHHHHHXSSEEEEETTTEEEEEEEXX..EEEEXHHHHHHHHHHHHHHHHHHHHSS..XXEEEEEEXTTXXHHHHHHHHHHHHHXXXEEEEEEEHHHHHHHHXXXTTSX.XEEEEEEEEXXXXEEEEEEEEEXXEEEEEEEEEETTXXXXHHHHHHHHHHHHHHHHHSS...XGGGS..HHHHHHHHHHHHHHHHHTTCSSCSEEEEEEEEEETXTEEEEEEEEHHHHH.HHCHHHHCTTTHHHHHHHHHCTXXCCCESEEEEEXXETTSHHHHHHHHHHTX.XXEEXSSXTTTTTTXXXT CS
   PF00012.15   2 iGiDLGttnsvvavmegg................kvevianeegnrttPsvvaFtkk.erlvGeaAkr...qavtnpkntvfsvkrliGrkfsdpevqkeikhlpykvvkkengkavvevealgekkkftpeeisamvLkklketaeaylgek.vtdavitvPaYFndaqRqatkdAgkiAGLnvlRivneptaaalaYGldkkdkernvlvfDlGggtfdvSileiedGvfevkatagDthlGGedfDealvehlveefkkkegi..dlskd..kkalqrLreaaekaKkeLSsssqteinleietldedgkdlsekltRakfe.eLvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsksvnpDeavAiGaA 371
                  +GiDLGtt+sv+av + g                +++vi +e+g+  tPs+vaF ++ +  vG +A +    ++t+++ ++ ++kr+iGr+f+d +v+ + ++ +y+v+ + +  a     + g+  + tpe+++  v+++l + a+  lg++ +t avi+vPa F  +q +at+dA k AGL++ Ri+ ep aaa+aYGl+++ + ++vlv+D+Gggt dvS+l + dG +ev+a  gD+ lGG dfD+++++ l+++++k+e i  d++k+  + a + L + ae aK++L + ++  ++ ++  l++ +k +s+++ R+ fe +L+ +l++r +++v++ lk++ ++ ++idevvlvGG++RiPkv++ +k +++ k +++ ++pD  vA+GaA
  MMETSP0890-20130614|39986_1  22 VGIDLGTTYSVIAVSDTGfmkrkkkknaaerympSARVIYDENGEALTPSMVAFLENgKTEVGWSALNlldSQATDARYVIRDAKRFIGRAFDDASVAPQAEEYSYQVIPNGTCAAFQIDPTRGHGASVTPERVGELVVRRLLQSAQRDLGHTgITTAVIAVPAGFGPNQTRATADAFKAAGLKIARILPEPVAAAVAYGLQRRPDVKHVLVYDFGGGTLDVSVLYVRDGSVEVVANHGDNDLGGSDFDHCIAHALATDLNKTEPIttDAQKQipPCAPHVLLRYAEDAKIALTD-TERVVTPPCRRLTD-DKPVSTTILRSYFEsQLCGHLFQRAISVVHSTLKESMIRLDDIDEVVLVGGTSRIPKVRSDIKAALNiKRLNTDIDPDVTVAVGAA 416
                  8*************75432222222222222222367********************9999*****874446899999*******************************996655555555689999*************************99***************************************************9*********************************************************999445555422347789**************.68888888888888.9************956*********************************************************************9 PP

>> PF06723.8  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0018       3.5       2      23 ..      20      41 ..      19      53 .. 0.88
   2 !   35.1   0.1   2.4e-12   4.6e-09      78     318 ..     160     418 ..     147     419 .] 0.68

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0018
                 SEE--B----EEEE-------- CS
    PF06723.8  2 kdlgiDLGtantlvyvkgkgiv 23
                 +++giDLGt+  ++ v+++g +
  MMETSP0890-20130614|39986_1 20 NTVGIDLGTTYSVIAVSDTGFM 41
                 689***************9976 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 2.4e-12
                  HHHHHHHH--.---SS--EEEE-------HHHHHHHHH--------EEEE--HHHHHH------TTS-.---EEEE-----EEEEEE----.....EEEEEEES----HHHHHHHHHHHHHHSB----HHHHHHHH..H----S.--HHHH-EEE-.........--BTT------EEE----HHHHHH.HHHHHHHHHHHHHHHTS-HHHHHHHHH---EEE---------HHHHHHH-----EE-S.STTTTTT-----T CS
    PF06723.8  78 lkyfikkvkk.kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveep.sgnmvvdiGggttevavislgg.....ivtsksvrvaGdeldeaiikyirkkynlliGertaekiki..eigsav.keeeeekmeik.........Grdlvtglpkevevsseevrealk.epvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvae.dpltcvakGtgkv 318
                  ++++++ +++   ++  ++ vi+vP g    + rA  +a k aG +   ++ ep+aAA+  gl+     +  +v d Gggt +v+v+ + +     +       ++G ++d+ i + + ++ n + + +t  + +i     ++    +e+ k+ ++          r l+   p ++++  +  ++ l  + +++ ++ v+++L++    L  di d  +vl+GG++ +  +++ ++ +++++   ++ dp  +va G+++v
  MMETSP0890-20130614|39986_1 160 VRRLLQSAQRdLGHTGITTAVIAVPAGFGPNQTRATADAFKAAGLKIARILPEPVAAAVAYGLQRRPDvKHVLVYDFGGGTLDVSVLYVRDgsvevVANHGDNDLGGSDFDHCIAHALATDLNKTEPITTDAQKQIppCAPHVLlRYAEDAKIALTdtervvtppCRRLTDDKPVSTTILRSYFESQLCgHLFQRAISVVHSTLKESMIRL-DDI-D-EVVLVGGTSRIPKVRSDIKAALNIKRLNTDiDPDVTVAVGAASV 418
                  56666666552334456789*******************************************987541566889***********9654322221334456789************9999998766665544443112222220222222333330000001115566666666666666666655541445677888888888877776.355.3.48888**********99999999987666559999999999876 PP

>> PF06406.6  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     6e-08   0.00012     141     219 ..     205     286 ..     192     295 .. 0.78
   2 ?    3.4   0.0     0.014        27     250     299 ..     350     399 ..     326     417 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6e-08
                  EEEEEEESSTT---HH.HHHS-TTS-EEEEE------EEEEE-..-------EEE--TT---HHHHHHHHHHTT--SB---H CS
    PF06406.6 141 kkvkvlPeslPagfea.lkeleeleslLivDlGGttLDvakvl..gklegiskvkgdskiGvslvtdavkealetastktss 219
                  k  ++lPe + a++   l++  ++ ++L+ D+GG tLDv+ +       ++ + +gd+++G s   + + +al+t+  kt  
  MMETSP0890-20130614|39986_1 205 KIARILPEPVAAAVAYgLQRRPDVKHVLVYDFGGGTLDVSVLYvrDGSVEVVANHGDNDLGGSDFDHCIAHALATDLNKTEP 286
                  55689*****98876526669999****************865114444566679******************998777765 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHHHHHHHTT-----EEEEE----TT..THHHHHHHHT--GG CS
    PF06406.6 250 evineavkkLkerviralsefsevtrvmvvGGGael..iaeaikkatevsde 299
                  +  ++a+  +++ + +++ +++++  v++vGG + +  + + ik a+++  +
  MMETSP0890-20130614|39986_1 350 HLFQRAISVVHSTLKESMIRLDDIDEVVLVGGTSRIpkVRSDIKAALNI--K 399
                  5567788888899999999***************986678888888776..3 PP

>> PF14450.1  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.06   1.2e+02       2      17 ..      22      37 ..      21      46 .. 0.87
   2 !    6.4   0.0    0.0034       6.7      55     119 ..     101     219 ..      79     220 .. 0.84
   3 !    7.6   0.0    0.0014       2.8       2      84 ..     232     390 ..     231     415 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.06
                 xxxxxxxxxxxxxxxx RF
    PF14450.1  2 alvDiGagktdvavae 17
                 +++D+G++ +++av  
  MMETSP0890-20130614|39986_1 22 VGIDLGTTYSVIAVSD 37
                 89***********976 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0034
                  xxxxxxxxxxxxxxxxxxxx...................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF14450.1  55 aveeAeriaklkigsaivss...................................................................ggaalknleelaeraggkpvriggpekisgleeivanpeyatalg 119
                  ++ +A+r  ++ +++a v+                                                                    g ++ +  +++++ ag   ++i++         i+ +p +a+a++
  MMETSP0890-20130614|39986_1 101 VIRDAKRFIGRAFDDASVAPqaeeysyqvipngtcaafqidptrghgasvtpervgelvvrrllqsaqrdlghtgittaviavpagfGPNQTRATADAFKAAG---LKIAR---------ILPEP-VAAAVA 219
                  455666666666666666336666666667889999999999999999999999999999999999999999999999*************************...*****.........*****.999987 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0014
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................................xxxxxxxxxx RF
    PF14450.1   2 alvDiGagktdvavaekgklgelrvigvGeqksrgikgghItdiddiakalktaveeAeriaklkigsaivss...................................................................................ggaalknlee 84 
                  ++ D+G+g+ dv+v +   +g ++v++      + + g+++   + ia+al t++++ e i  +++++ i+                                                                                     g++ ++ ++ 
  MMETSP0890-20130614|39986_1 232 LVYDFGGGTLDVSVLYV-RDGSVEVVANH--GDNDLGGSDFD--HCIAHALATDLNKTEPI-TTDAQKQIP-PcaphvllryaedakialtdtervvtppcrrltddkpvsttilrsyfesqlcghlfqraisvvhstlkesmirlddidevvlvgGTSRIPKVRS 390
                  566*************9.99988887643..578889999**..99**********99999.887776655.2355555556666666666666666666666666666666666666666666666666666666666666666666655555555555555555 PP

>> PF01869.15  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.017        34       1      25 [.      22      44 ..      22     227 .. 0.74
   2 !   13.1   0.0   1.9e-05     0.037     200     268 ..     353     416 ..     347     418 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.017
   PF01869.15  1 lGiDgGsTttkavlmdekgevlgrg 25
                 +GiD+G+T +   + d    +++r 
  MMETSP0890-20130614|39986_1 22 VGIDLGTTYSVIAVSDTG--FMKRK 44
                 8*****998877776633..23333 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.9e-05
   PF01869.15 200 aglhraialrvialisrsggvtdqvtltGGvakneaavkelrklikenygevqininpdsiytgalGAa 268
                  + + + + + +++ + r++++ d+v+l+GG+++      ++r  ik + + +  n+++d+++t a+GAa
  MMETSP0890-20130614|39986_1 353 QRAISVVHSTLKESMIRLDDI-DEVVLVGGTSRI----PKVRSDIKAALNIKRLNTDIDPDVTVAVGAA 416
                  556666777777777788888.55**********....44556668888888899*************8 PP

>> PF01968.13  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   2.5e+03      75     106 ..      17      48 ..       9      58 .. 0.78
   2 !   12.1   0.0   3.5e-05     0.068      47      95 ..     198     247 ..     159     260 .. 0.81
   3 ?    3.6   0.0     0.014        27     214     282 ..     353     416 ..     282     417 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
   PF01968.13  75 glknaivvDvGGTstDvalisdgepelseege 106
                  g  n +++D G T + +a+ + g ++++++ +
  MMETSP0890-20130614|39986_1  17 GRVNTVGIDLGTTYSVIAVSDTGFMKRKKKKN 48 
                  66688999999998888888888888877665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.5e-05
   PF01968.13  47 ieearekpvetilSGPaagvvgaaa.elaglknaivvDvGGTstDvalis 95 
                  + +a +  +  il  P a +v++   +  + k+++v D GG + Dv+++ 
  MMETSP0890-20130614|39986_1 198 AFKAAGLKIARILPEPVAAAVAYGLqRRPDVKHVLVYDFGGGTLDVSVLY 247
                  555666668888899999999998899********************964 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.014
   PF01968.13 214 egllsvagetmadairvlsvqrgkdkkelplvlfGGagplhaaelaeelgakevipeeyagvlsAvGal 282
                  ++++sv+ +t+++ + +l      d +e+ lv+     p +  +++ +l++k+   +  ++v  AvGa+
  MMETSP0890-20130614|39986_1 353 QRAISVVHSTLKESMIRL-----DDIDEVVLVGGTSRIPKVRSDIKAALNIKRLNTDIDPDVTVAVGAA 416
                  455555555555555555.....66666666666666688999************************97 PP

>> PF13507.1  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0027       5.3       4      32 ..     181     209 ..     178     248 .. 0.87
   2 ?    3.0   0.0     0.017        34      29      71 ..     355     397 ..     350     409 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0027
    PF13507.1   4 VailrepGtnceyemaaafekaGfevedv 32 
                  +a++   G n  + +a af++aG +  ++
  MMETSP0890-20130614|39986_1 181 IAVPAGFGPNQTRATADAFKAAGLKIARI 209
                  799********************998776 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.017
    PF13507.1  29 vedvhmsdllegrvslddfqilalpGGfsygDelgsgkgiaks 71 
                  ++ v+ s l e+ ++ldd+  ++l+GG s   +  s   +a +
  MMETSP0890-20130614|39986_1 355 AISVVHSTLKESMIRLDDIDEVVLVGGTSRIPKVRSDIKAALN 397
                  4558889999999****************88777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.40s 00:00:01.26 Elapsed: 00:00:01.10
# Mc/sec: 912.79
//
Query:       MMETSP0890-20130614|39982_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.18   11.4   0.0    1.4  2  PF02391.12 MoaE protein


Domain annotation for each model (and alignments):
>> PF02391.12  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.3e-05      0.18       6      82 ..       3      82 ..       1      87 [. 0.80
   2 ?   -2.8   0.0      0.35   4.8e+03      58      73 ..     113     128 ..     109     129 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
                 SS---HHHHHHHHT-STT--EEEEE----CCCT---EEEEEEEE-H..HHHHHHHHHHHHHHHHHS---E.EEEEEE--- CS
   PF02391.12  6 kepisveevielvsereaGAivtFvGvvRdedegkeverleyeayp..emaekeleeiveevkekfpvvr.vavvHrlGe 82
                 + pi+ ee+ie+++  ++G +  ++G+v   ++gk+++ l     p  + + + le i+ +v+++ + v+  +  H +G 
  MMETSP0890-20130614|39982_1  3 EVPIDDEEMIEYLNVLREGILEAYTGIVQGLKDGKQIQLLININSPaiPKIFHFLERIARDVNDHPNSVDdSILEHAIGL 82
                 56899******************************999886544331157778899999999888777665777788776 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.35
                  HHHHHHHHHHHS---E CS
   PF02391.12  58 leeiveevkekfpvvr 73 
                   ++i e +k+k++v++
  MMETSP0890-20130614|39982_1 113 DTQIFEYAKSKIDVNH 128
                  5678888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       312  (0.0228204); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.71
# Mc/sec: 435.39
//
Query:       MMETSP0890-20130614|39989_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       186  (0.0136044); expected 273.4 (0.02)
Passed bias filter:                      185  (0.0135313); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:01.32
# Mc/sec: 123.45
//
Query:       MMETSP0890-20130614|39996_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-14   54.1   0.5    4.6e-14   52.7   0.3    1.7  1  PF01138.16 3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> PF01138.16  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.3   3.4e-18   4.6e-14       2     131 ..      39     148 ..      38     149 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 3.4e-18
   PF01138.16   2 lRplsietgvlsranGSaylelgdtkvlatvtgpieerpseerddaegeldveveyapfasverrregrpsdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinaaslALadagi 131
                   R+++ie+++++++nGSa+++lg+t+v+++  +       +  d   + + +e+e++            p+ eeie+ +++++a+++ i++e+ pk  +  +   l  dg +  +a+i+aas+ +a ag+
  MMETSP0890-20130614|39996_1  39 PRRVEIEMNIVAQSNGSARVKLGNTEVICALRLLARG---AY-D---EIVQCEIECL------------PGLEEIEIRDVVTKAIKATIITERLPKVRLSFHFVFLGIDG-GEASACIAAASVTIAAAGV 148
                  59*******************************9965...44.5...3499***988............688**************************************.***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       323  (0.0236249); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.84
# Mc/sec: 678.97
//
Query:       MMETSP0890-20130614|40002_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-05   23.0   1.6       0.23   11.5   0.1    3.7  3  PF13516.1  Leucine Rich repeat
    0.00037   19.9   0.2      0.042   13.3   0.0    3.0  3  PF12799.2  Leucine Rich repeats (2 copies)
     0.0016   18.0   0.6         32    4.9   0.0    4.5  4  PF00560.28 Leucine Rich Repeat
  ------ inclusion threshold ------
       0.02   14.8   2.2         39    4.9   0.0    4.2  4  PF13504.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF13516.1  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        39       6      20 ..      10      24 ..       6      27 .. 0.84
   2 ?    3.6   0.0     0.023        79       2      19 ..      88     105 ..      87     111 .. 0.82
   3 !   11.5   0.1   6.7e-05      0.23       2      23 ..     114     135 ..     114     136 .. 0.95

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.012
    PF13516.1  6 sLdLsnNqigdeGls 20
                  Ld+s+Nq+  eGls
  MMETSP0890-20130614|40002_1 10 LLDVSGNQLPTEGLS 24
                 5999*****999997 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.023
    PF13516.1   2 knLtsLdLsnNqigdeGl 19 
                  ++Lt+L+L +  +g + +
  MMETSP0890-20130614|40002_1  88 PKLTVLNLAQSRLGANLV 105
                  79******9999987665 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 6.7e-05
    PF13516.1   2 knLtsLdLsnNqigdeGlsaLa 23 
                  ++L++LdL +++ gd Gl aL+
  MMETSP0890-20130614|40002_1 114 PSLQVLDLTGCGSGDAGLDALC 135
                  79*******************9 PP

>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.021        71      25      36 ..       7      18 ..       4      30 .. 0.83
   2 ?   -1.9   0.0      0.72   2.5e+03      20      33 ..      43      56 ..      38      65 .. 0.57
   3 !   13.3   0.0   1.2e-05     0.042       1      35 [.      88     125 ..      88     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.021
    PF12799.2 25 nLktLnLsnNpi 36
                  L +L++s+N++
  MMETSP0890-20130614|40002_1  7 RLNLLDVSGNQL 18
                 689999****98 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.72
    PF12799.2 20 lanLpnLktLnLsn 33
                 l +   L+ L+   
  MMETSP0890-20130614|40002_1 43 LLQNAHLRRLSFRK 56
                 55555566665444 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.2e-05
    PF12799.2   1 tnLevLdLsnNnIk.dlppe.lanLp.nLktLnLsnNp 35 
                  ++L+vL+L+++++  +l ++ +  Lp +L++L+L+++ 
  MMETSP0890-20130614|40002_1  88 PKLTVLNLAQSRLGaNLVAQlIRALPpSLQVLDLTGCG 125
                  79***********87899974688966*********96 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0093        32       2      15 ..       8      23 ..       7      46 .. 0.70
   2 ?    1.1   0.0      0.17   5.7e+02       1      16 [.      48      64 ..      48      74 .. 0.81
   3 ?    2.3   0.0     0.066   2.3e+02       1      17 [.      89     114 ..      89     117 .. 0.74
   4 ?    4.6   0.0     0.012        40       1      10 [.     115     124 ..     115     126 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0093
                 ESEEEETSSBCBC..H CS
   PF00560.28  2 LeeLdLsgNnlts..l 15
                 L  Ld+sgN+l +  l
  MMETSP0890-20130614|40002_1  8 LNLLDVSGNQLPTegL 23
                 778*******985462 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.17
                 TESEEEETSS.BCBCHH CS
   PF00560.28  1 nLeeLdLsgN.nltslp 16
                 +L++L+++ + +++s+ 
  MMETSP0890-20130614|40002_1 48 HLRRLSFRKCtPVSSVA 64
                 79********9998754 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.066
                  TESEEEETSSBCB.C........HHH CS
   PF00560.28   1 nLeeLdLsgNnlt.s........lpp 17 
                  +L++L+L   +l  +        lpp
  MMETSP0890-20130614|40002_1  89 KLTVLNLAQSRLGaNlvaqliraLPP 114
                  69******999995566666666666 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.012
                  TESEEEETSS CS
   PF00560.28   1 nLeeLdLsgN 10 
                  +L++LdL g+
  MMETSP0890-20130614|40002_1 115 SLQVLDLTGC 124
                  79*******9 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.047   1.6e+02       2      13 ..       7      18 ..       6      24 .. 0.79
   2 ?   -2.1   0.0       2.5   8.5e+03       2      11 ..      48      57 ..      48      62 .. 0.83
   3 ?    3.4   0.0     0.037   1.3e+02       1      14 [.      88     101 ..      88     109 .. 0.86
   4 ?    4.9   0.0     0.012        39       1      12 [.     114     125 ..     114     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.047
    PF13504.1  2 nLkeLdLsgnrL 13
                 +L  Ld+sgn+L
  MMETSP0890-20130614|40002_1  7 RLNLLDVSGNQL 18
                 57779*****98 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.5
    PF13504.1  2 nLkeLdLsgn 11
                 +L++L+ + +
  MMETSP0890-20130614|40002_1 48 HLRRLSFRKC 57
                 7999998777 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.037
    PF13504.1   1 pnLkeLdLsgnrLt 14 
                  p+L++L+L+  rL 
  MMETSP0890-20130614|40002_1  88 PKLTVLNLAQSRLG 101
                  78******998875 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.012
    PF13504.1   1 pnLkeLdLsgnr 12 
                  p+L++LdL g++
  MMETSP0890-20130614|40002_1 114 PSLQVLDLTGCG 125
                  79******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.79
# Mc/sec: 1219.41
//
Query:       MMETSP0890-20130614|40001_1  [L=1644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-35  120.1   2.4    5.8e-20   70.5   0.6    2.4  2  PF02671.16 Paired amphipathic helix repeat
      2e-26   91.6   0.1    5.6e-26   90.1   0.1    1.8  1  PF08295.7  Sin3 family co-repressor


Domain annotation for each model (and alignments):
>> PF02671.16  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   4.8e-17   3.2e-13       1      47 []      19      65 ..      19      65 .. 0.99
   2 !   70.5   0.6   8.5e-24   5.8e-20       1      47 []     191     237 ..     191     237 .. 0.99

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 4.8e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHH----S- CS
   PF02671.16  1 pekYqeFLeiLhdyskeiisrtelyqeVadLlgghpdLleeFnqFLp 47
                 pe+Y+eFLei++ ++ + i++  ++++V++L++g+  L+ +Fn+FLp
  MMETSP0890-20130614|40001_1 19 PEIYNEFLEIMKAFKSQEIDTPGVIEQVSTLFRGYGKLIYGFNTFLP 65
                 89********************************************9 PP

  == domain 2    score: 70.5 bits;  conditional E-value: 8.5e-24
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHH----S- CS
   PF02671.16   1 pekYqeFLeiLhdyskeiisrtelyqeVadLlgghpdLleeFnqFLp 47 
                  pe+Y++FLe+Lh+y+ e++ ++e+ ++Va+L+++h dLl+eF+ FLp
  MMETSP0890-20130614|40001_1 191 PETYKAFLEVLHTYQREQKGIEEVLNRVAELFKDHSDLLREFTFFLP 237
                  89********************************************9 PP

>> PF08295.7  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   8.3e-30   5.6e-26       4      89 ..     727     814 ..     724     825 .. 0.92

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 8.3e-30
    PF08295.7   4 rlgpsYrlLpkseknakcsgrdeldkevLNDewvsvpswsed..ssfkahrknqyeealfrvEderfelDvliesnrstikeleelle 89 
                  + +psYr Lp+s + a cs r+e+d+ vLND++vsv++ s+d  +s  + r+n  eealf++Ede fe+D+++ +n+s+i+ le + +
  MMETSP0890-20130614|40001_1 727 ERTPSYRRLPDSVPRAVCSYRSEIDAAVLNDNYVSVATTSDDanYSQLHLRRNAHEEALFKTEDEHFEIDMVVHANTSAIRALEAISR 814
                  569*************************************7734677899**********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1644 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       666  (0.0487127); expected 273.4 (0.02)
Passed bias filter:                      251  (0.0183587); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.11u 0.38s 00:00:02.48 Elapsed: 00:00:01.48
# Mc/sec: 2661.90
//
Query:       MMETSP0890-20130614|40008_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.41s 00:00:01.11 Elapsed: 00:00:01.08
# Mc/sec: 1011.80
//
Query:       MMETSP0890-20130614|40024_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   61.1   3.1    1.2e-16   61.1   2.1    1.8  2  PF11708.3 Pre-mRNA splicing Prp18-interacting factor
  ------ inclusion threshold ------
      0.032   14.3   1.1      0.032   14.3   0.8    2.3  2  PF09736.4 Pre-mRNA-splicing factor of RES complex


Domain annotation for each model (and alignments):
>> PF11708.3  Pre-mRNA splicing Prp18-interacting factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   2.1   1.7e-20   1.2e-16     141     239 .]       2     107 ..       1     107 [. 0.88
   2 ?   -1.1   0.1      0.17   1.2e+03     180     197 ..     199     216 ..     151     244 .. 0.59

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 1.7e-20
    PF11708.3 141 weaakkgelnvhlqAnPTklellakkekekkekkkkqkkesllekyggeevleekpkeell....gqsekyveykek....gkekkkakskyeedvllnnHtsvwGs 239
                  w+++++++ ++ +qA+P+++el++ ++  +++++ ++++ +l++kyg++++ +++++e++l    +qse+y e +++      +++ ++sky+ed++ nnHtsvwGs
  MMETSP0890-20130614|40024_1   2 WDQQNENS-KIIIQAEPSRAELERTSHTLASQAQAAAHRAQLMAKYGDSSTIDANKEENKLrsfqSQSESYREFDRHgqivSGSQQIPSSKYAEDIYNNNHTSVWGS 107
                  99999999.****************************************9666555555542222789999999999999977899********************8 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.17
    PF11708.3 180 esllekyggeevleekpk 197
                  ++ + + ++e++ +++++
  MMETSP0890-20130614|40024_1 199 QQAMLRIEKEAHASNSNN 216
                  222222223333333333 PP

>> PF09736.4  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.2      0.11   7.3e+02      26      61 ..      31      66 ..       3     101 .. 0.53
   2 ?   14.3   0.8   4.7e-06     0.032      32      95 ..     186     252 ..     155     258 .] 0.65

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.11
    PF09736.4 26 keekekkeeeekewgkglvqkeeaekkleeeekakk 61
                 ++ +++ ++ ++ ++ g+  + +a+k+++++++ ++
  MMETSP0890-20130614|40024_1 31 SQAQAAAHRAQLMAKYGDSSTIDANKEENKLRSFQS 66
                 333333334444444444444444444444444433 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.7e-06
    PF09736.4  32 keeeekewgkglvqkeeaekkleeeekakkkpl...aryeddedldeelkekerfeDPmaeflkkkk 95 
                   + +e+ +++ +vq+++ + ++e +++++++ +   + + + ed+++  ++k  ++DPm++fl++ k
  MMETSP0890-20130614|40024_1 186 PDYQELDLDESKVQQAMLRIEKEAHASNSNNYNslaSTQVTLEDMEAYRRSKLAADDPMRSFLHQDK 252
                  4455666666666666665555544444443333434556779*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       794  (0.0580749); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:01.05
# Mc/sec: 588.82
//
Query:       MMETSP0890-20130614|40028_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   13.0   0.2       0.88    9.0   0.0    2.2  2  PF11026.3 Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> PF11026.3  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   6.5e-05      0.88      49      89 ..      26      66 ..       8      79 .. 0.78
   2 ?    2.2   0.0    0.0086   1.2e+02      62      85 ..     147     170 ..     105     173 .] 0.56

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6.5e-05
    PF11026.3 49 kaelknlrrRlrlirraillatlsallivlvilllflsall 89
                 +  l+++r    + +  + ++t++++l+++++++ f ++ l
  MMETSP0890-20130614|40028_1 26 RDDLNRIRNSSFVWTTIFCFTTTAIMLTCTIVFAAFANQEL 66
                 66777777777788888999****************95544 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0086
    PF11026.3  62 irraillatlsallivlvilllfl 85 
                  i +a++ at+++ ++  v  +lfl
  MMETSP0890-20130614|40028_1 147 ISNALSIATTATTIVGYVLGALFL 170
                  455555666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       650  (0.0475424); expected 273.4 (0.02)
Passed bias filter:                      487  (0.0356202); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.42s 00:00:00.86 Elapsed: 00:00:01.09
# Mc/sec: 380.34
//
Query:       MMETSP0890-20130614|40038_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-06   25.2   0.6      0.051   13.3   0.0    3.6  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.048   13.2   0.1       0.12   11.9   0.0    1.6  1  PF10313.4  Uncharacterised protein domain (DUF2415)
      0.092   12.9   1.2         20    5.4   0.0    3.2  3  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.031   1.4e+02      12      39 .]      43      68 ..      37      68 .. 0.87
   2 !   13.3   0.0   1.1e-05     0.051      12      38 ..     107     131 ..     100     132 .. 0.89
   3 !    5.4   0.0    0.0035        16      11      37 ..     151     175 ..     142     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.031
                 SSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27 12 spVtcvafspdgpllasgSrDgtirlWd 39
                 ++V+ ++fs    l+a g + g++++ d
  MMETSP0890-20130614|40038_1 43 DWVRRCDFSGR--LIALGTASGNVHVVD 68
                 79999999999..999999999999865 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.1e-05
                  SSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgSrDgtirlW 38 
                  ++Vt++a + +  +la+g+r g ++lW
  MMETSP0890-20130614|40038_1 107 GGVTALALNGN--ILATGGREGDLKLW 131
                  57888888888..************** PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0035
                  SSSEEEEEEESSSTEEEEEETTSEEEE CS
   PF00400.27  11 tspVtcvafspdgpllasgSrDgtirl 37 
                  ++ V++va+ +    ++ g+ Dg++rl
  MMETSP0890-20130614|40038_1 151 QNVVSAVAVLDA--TVIAGCLDGSLRL 175
                  567999999999..***********97 PP

>> PF10313.4  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.7e-05      0.12       3      37 ..      45      74 ..      45      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.7e-05
    PF10313.4  3 fRvckFSpesglnDLLvisEhvGrvHlvDlRtgfd 37
                 +R c FS       L +    +G+vH+vD+ +g++
  MMETSP0890-20130614|40038_1 45 VRRCDFS--GR---LIALGTASGNVHVVDVQKGVT 74
                 6999999..55...8999999*********98776 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0044        20      19      38 ..      50      69 ..      30      70 .. 0.89
   2 ?   -1.4   0.1      0.62   2.8e+03      13      26 ..     108     121 ..     101     128 .. 0.50
   3 ?    4.4   0.0    0.0092        42      12      35 ..     152     175 ..     130     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0044
    PF13570.1 19 vdgglvyvgtgdGrlyAlDa 38
                 ++g+l+  gt  G+++++D 
  MMETSP0890-20130614|40038_1 50 FSGRLIALGTASGNVHVVDV 69
                 57999*************96 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.62
    PF13570.1  13 vnsspavdgglvyv 26 
                  +++ +a+ g+ +  
  MMETSP0890-20130614|40038_1 108 GVTALALNGNILAT 121
                  22344555555544 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0092
    PF13570.1  12 pvnsspavdgglvyvgtgdGrlyA 35 
                   v+s +av + +v +g  dG+l+ 
  MMETSP0890-20130614|40038_1 152 NVVSAVAVLDATVIAGCLDGSLRL 175
                  577889999***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       238  (0.0174078); expected 273.4 (0.02)
Passed bias filter:                      213  (0.0155793); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 784.89
//
Query:       MMETSP0890-20130614|40040_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-07   31.1   0.0    1.3e-07   30.8   0.0    1.1  1  PF00303.14 Thymidylate synthase
     0.0049   15.9   0.0     0.0068   15.4   0.0    1.1  1  PF11258.3  Protein of unknown function (DUF3048)


Domain annotation for each model (and alignments):
>> PF00303.14  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.9e-11   1.3e-07      57     206 ..      25     207 ..       6     211 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.9e-11
                  HHHHHHH-------CCHHCT--TTT----HH...........T--------CCCC-----.---.................----HHHHHHHHHHH-TT-TT-EEE-......--CCCGGGSSS--SEEEEEEEEE.TTEEEEEEEECCEE-----HHHHHHHHHHHHHHHHH---B---EEEEEE CS
   PF00303.14  57 eEllwflsgstnlrflkekgvkiwdewased...........gdlGpvYGkqwrhfeaee.eyg.................kgvDQlarviekLkenpnsRriivsa......wnpadleemalpPChllfqfyvr.dgkLslqlyqRSnDvflGvpfNiasyalLtemvAqvtglevgefvhtig 206
                  +E+  + ++s++ +f  ++ v + ++ +  +           g l   Y k+ + +e ++ e +                 +  +++a+vi+ L+++p s+r+++ +        + d ++++   C   + fy+  dg L  + + R + + + +p Ni  +a L + +A+++ + vge++h+i 
  MMETSP0890-20130614|40040_1  25 TEIRRISEKSDDKDFTVRHFVGVIEKMSPTKaalvetelfpiGALE-FYTKKNMGWEYNSeE-EsqwllpergggqgdyrlGMPEKIANVINCLRTEPRSKRAVIPIpfadepSSAVDWTNQTQTKCCRELYFYIGsDGVLRATGILRMQNANI-FPKNIHFFATLMNHIASELSVPVGEYTHFIM 207
                  5555555555555555555555444444333556665666665555.566666665444331.12344444445555555577899*******************997666665666669999999999999999737**********999988.8***************************996 PP

>> PF11258.3  Protein of unknown function (DUF3048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-06    0.0068     125     217 ..      20     113 ..      10     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1e-06
                  TS-EEEEHHHHHHHHHH-----B-------B-...-----------EEEEE-S---EEEEEEETT.TTEEEEEE---B-B-TT---B--BSEEE CS
    PF11258.3 125 phnlytsleklekaaekkgyrtekeeeleekyfeeeeeapkgeeaskievryseaakvsfeYdee.tkeYlrsqdgkphideetgeqltvknvv 217
                    ++yt+  ++ ++ ++k+++ ++  ++ ek++ ++++  ++e      +++++++++ +eY++e ++++l  ++g  + d   g + +++nv+
  MMETSP0890-20130614|40040_1  20 AKEMYTEIRRISEKSDDKDFTVRHFVGVIEKMSPTKAALVETELFPIGALEFYTKKNMGWEYNSEeESQWLLPERGGGQGDYRLGMPEKIANVI 113
                  4789****************************9999999**9********************86516789999999999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.34s 00:00:00.80 Elapsed: 00:00:01.04
# Mc/sec: 502.31
//
Query:       MMETSP0890-20130614|40050_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       403  (0.0294763); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 733.70
//
Query:       MMETSP0890-20130614|40055_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 487.68
//
Query:       MMETSP0890-20130614|40057_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-23   81.3   0.4    6.6e-22   77.6   0.3    2.1  1  PF03969.11 AFG1-like ATPase
    1.6e-12   45.6   1.1    2.2e-05   23.3   0.0    3.1  3  PF00036.27 EF hand
      4e-11   41.6   0.4    9.3e-05   21.4   0.0    2.8  2  PF13202.1  EF hand
    2.5e-10   40.2   1.3    6.4e-10   38.9   0.2    2.2  2  PF13499.1  EF-hand domain pair
    7.2e-10   37.8   1.0     0.0015   18.1   0.0    3.3  3  PF13405.1  EF-hand domain
    1.2e-08   34.2   1.1    0.00034   20.0   0.0    2.6  2  PF13833.1  EF-hand domain pair
     0.0024   17.8   0.8        5.8    6.8   0.0    3.3  3  PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region


Domain annotation for each model (and alignments):
>> PF03969.11  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.3   3.4e-25   6.6e-22     202     360 ..      12     196 ..       1     198 [. 0.80

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 3.4e-25
   PF03969.11 202 vDYRlrk..leqaevylapldeaaeaaldklfkelts.gepepestlev..aarklrveaa..agdlvrfsfaelceaarsqsdylalaerfstvlledvevltkakqdearRfiaLvDelYdadvklvvs.............aeaaledlyeagrl......efefeRtlSRLlemqsedyla 360
                   DYRl k   e a+vy + + ++a++++ ++ + l+  +e + +  l     +r+++v++a  a  + +f+f +lc +a ++ dyla+a+  + v++++v+ ++  + d arRfi+L D+lYd+d  +v+               +  +++  ++++       +f f R++SRL+em s +yl+
  MMETSP0890-20130614|40057_1  12 TDYRLVKgaGETARVYFIESCDHARDEFLDCKERLLAdPELSDRLVLRTrdSGREVHVPRAdlACRAGYFTFDQLCGSALGAADYLAIAQALHVVFVDGVPIMDLNDLDRARRFITLLDALYDNDCVVVIYaatepeflfvadkKNNTFSEKARDDKTkkardeAFAFDRAVSRLAEMGSVEYLT 196
                  69**98622578999**9999999999999999887657777776665522579999887722345678***********************************************************99988899999997773344444444444334444589**************99986 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.9   9.5e+03      15      23 ..      79      87 ..      79      87 .. 0.81
   2 !   20.0   0.1   1.3e-07   0.00025       1      27 [.     216     242 ..     216     244 .. 0.92
   3 !   23.3   0.0   1.1e-08   2.2e-05       1      25 [.     258     282 ..     258     285 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.9
                 SEBEHHHHH CS
   PF00036.27 15 GkIsfeEfk 23
                 G+ +f+ ++
  MMETSP0890-20130614|40057_1 79 GYFTFDQLC 87
                 889999885 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.3e-07
                  HHHHHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkealk 27 
                  +++++F+ +D+D++G ++ +E+ ++l+
  MMETSP0890-20130614|40057_1 216 DVDQLFQSLDVDNSGNLDTDELAALLA 242
                  5899*******************9987 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 1.1e-08
                  HHHHHHHHHCTTTSSEBEHHHHHHH CS
   PF00036.27   1 elkeaFkefDkDgdGkIsfeEfkea 25 
                  e++ a+ ++D++gdG++++eE++++
  MMETSP0890-20130614|40057_1 258 EVQIAMTLLDTNGDGFVDLEELRHY 282
                  67889*****************987 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   9.6e-07    0.0019       3      24 ..     219     240 ..     217     242 .. 0.89
   2 !   21.4   0.0   4.7e-08   9.3e-05       7      23 ..     265     281 ..     260     284 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 9.6e-07
                  HHHHHH--S----B-HHHHHHH CS
    PF13202.1   3 dtFrafDlNgDGkIsreELkrl 24 
                  ++F+ +D++++G ++ +EL +l
  MMETSP0890-20130614|40057_1 219 QLFQSLDVDNSGNLDTDELAAL 240
                  58*****************996 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 4.7e-08
                  HH--S----B-HHHHHH CS
    PF13202.1   7 afDlNgDGkIsreELkr 23 
                   +D+NgDG+++ eEL+ 
  MMETSP0890-20130614|40057_1 265 LLDTNGDGFVDLEELRH 281
                  68*************97 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   2.6e+03       8      21 ..      31      44 ..      23      62 .. 0.80
   2 !   38.9   0.2   3.3e-13   6.4e-10       3      65 ..     218     282 ..     205     283 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.3
    PF13499.1  8 llDkdgdgyldkee 21
                 ++D  +d +ld  e
  MMETSP0890-20130614|40057_1 31 SCDHARDEFLDCKE 44
                 57888888888776 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 3.3e-13
    PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels......deevrevldyifkelDkngdGvlsfeEflqa 65 
                   ++F++lD+d++g ld +eL +ll   ++ ++      deev+      +  lD+ngdG++++eE++++
  MMETSP0890-20130614|40057_1 218 DQLFQSLDVDNSGNLDTDELAALLADVSELRRghrnvpDEEVQIA----MTLLDTNGDGFVDLEELRHY 282
                  578*************************9999*966655555555....*****************987 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         2   3.9e+03       9      21 ..      32      44 ..      30      44 .. 0.81
   2 !   16.4   0.1   2.6e-06    0.0052       3      27 ..     218     242 ..     216     250 .. 0.90
   3 !   18.1   0.0   7.7e-07    0.0015       7      24 ..     264     281 ..     258     287 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2
                 C-------B---H CS
    PF13405.1  9 fDkdgdGkidaeE 21
                  D+ +d ++d +E
  MMETSP0890-20130614|40057_1 32 CDHARDEFLDCKE 44
                 5888999999877 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 2.6e-06
                  H---GCC-------B---HHHHHHH CS
    PF13405.1   3 reaFklfDkdgdGkidaeELrdaLr 27 
                   ++F+ +D d++G +d +EL ++L 
  MMETSP0890-20130614|40057_1 218 DQLFQSLDVDNSGNLDTDELAALLA 242
                  689*****************99986 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 7.7e-07
                  GCC-------B---HHHH CS
    PF13405.1   7 klfDkdgdGkidaeELrd 24 
                  +l+D++gdG++d+eELr+
  MMETSP0890-20130614|40057_1 264 TLLDTNGDGFVDLEELRH 281
                  79**************98 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   3.2e-05     0.063      24      52 ..     214     242 ..     206     244 .. 0.89
   2 !   20.0   0.0   1.7e-07   0.00034       8      47 ..     245     279 ..     243     285 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.2e-05
    PF13833.1  24 eeevdilfrefDtdgdGkisfeEFcvlle 52 
                  + +vd lf  +D d++G ++ +E  +ll+
  MMETSP0890-20130614|40057_1 214 DLDVDQLFQSLDVDNSGNLDTDELAALLA 242
                  5689*********************9997 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.7e-07
    PF13833.1   8 eeLkralallglkglseeevdilfrefDtdgdGkisfeEF 47 
                   eL+r     g   + +eev+i + ++Dt+gdG +++eE 
  MMETSP0890-20130614|40057_1 245 SELRR-----GHRNVPDEEVQIAMTLLDTNGDGFVDLEEL 279
                  68888.....65559***********************96 PP

>> PF10591.4  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.013        25      92     109 ..      27      44 ..      17      47 .. 0.90
   2 !    6.8   0.0     0.003       5.8      57      85 ..     218     246 ..     154     253 .. 0.87
   3 ?    3.3   0.0     0.038        74      53      78 ..     256     281 ..     245     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.013
    PF10591.4  92 effksCDadkdkkisleE 109
                   f++sCD  +d+ ++ +E
  MMETSP0890-20130614|40057_1  27 YFIESCDHARDEFLDCKE 44 
                  59************9998 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.003
    PF10591.4  57 eWkFnqlDtnkdkvlsksElaplraplvk 85 
                     F++lD+++ + l++ Ela+l a++ +
  MMETSP0890-20130614|40057_1 218 DQLFQSLDVDNSGNLDTDELAALLADVSE 246
                  5569******************9998655 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.038
    PF10591.4  53 keaveWkFnqlDtnkdkvlsksElap 78 
                  +e+v+     lDtn d++++ +El++
  MMETSP0890-20130614|40057_1 256 DEEVQIAMTLLDTNGDGFVDLEELRH 281
                  5677777888*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      323  (0.0236249); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.69
# Mc/sec: 1017.58
//
Query:       MMETSP0890-20130614|40062_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       397  (0.0290374); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.53
# Mc/sec: 565.18
//
Query:       MMETSP0890-20130614|40083_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-33  112.5  36.0    1.1e-06   27.9   0.4    6.1  6  PF02493.15 MORN repeat


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.8   5.1e-08   0.00069       1      23 []      42      64 ..      42      64 .. 0.95
   2 !   23.3   0.6   2.3e-09   3.1e-05       1      23 []      65      87 ..      65      87 .. 0.97
   3 !   20.1   1.1   2.3e-08   0.00032       1      18 [.      88     105 ..      88     110 .. 0.93
   4 !   26.1   0.1   2.8e-10   3.9e-06       1      22 [.     111     132 ..     111     133 .. 0.97
   5 !   27.9   0.4   7.7e-11   1.1e-06       1      21 [.     134     154 ..     134     156 .. 0.97
   6 !   19.7   0.5     3e-08   0.00042       1      20 [.     157     176 ..     157     178 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 5.1e-08
                 EE-EEETTEEE-EEEB------- CS
   PF02493.15  1 YeGeWknGkrhGkGvytwpdGdr 23
                 YeGe  nG  +GkG+y++ d +r
  MMETSP0890-20130614|40083_1 42 YEGEILNGELDGKGTYWYGDKSR 64
                 ******************99876 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 2.3e-09
                 EE-EEETTEEE-EEEB------- CS
   PF02493.15  1 YeGeWknGkrhGkGvytwpdGdr 23
                 Y+G ++  +r+G+G y+++dG++
  MMETSP0890-20130614|40083_1 65 YQGSFRSSRRDGYGEYYFADGSV 87
                 *********************85 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 2.3e-08
                  EE-EEETTEEE-EEEB-- CS
   PF02493.15   1 YeGeWknGkrhGkGvytw 18 
                  Y Ge++nG +hGkG +++
  MMETSP0890-20130614|40083_1  88 YKGEYRNGIKHGKGLFIY 105
                  9**************998 PP

  == domain 4    score: 26.1 bits;  conditional E-value: 2.8e-10
                  EE-EEETTEEE-EEEB------ CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                  Y+Ge++n++++G+G+ + pdG+
  MMETSP0890-20130614|40083_1 111 YQGEFRNDLKNGYGTTIHPDGS 132
                  *********************8 PP

  == domain 5    score: 27.9 bits;  conditional E-value: 7.7e-11
                  EE-EEETTEEE-EEEB----- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                  Y+Ge+ ++++hG+G y+w++G
  MMETSP0890-20130614|40083_1 134 YIGEYLDDMMHGQGEYIWSNG 154
                  9*******************9 PP

  == domain 6    score: 19.7 bits;  conditional E-value: 3e-08
                  EE-EEETTEEE-EEEB---- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpd 20 
                  Y+G+W +++rhG G + ++d
  MMETSP0890-20130614|40083_1 157 YIGNWEYDQRHGLGQMFFSD 176
                  9**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       307  (0.0224547); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.69
# Mc/sec: 635.56
//
Query:       MMETSP0890-20130614|40086_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-18   64.9   0.0    5.5e-18   64.8   0.0    1.0  1  PF03881.9  Fructosamine kinase
     0.0079   15.2   0.0     0.0092   15.0   0.0    1.1  1  PF02958.15 Ecdysteroid kinase
  ------ inclusion threshold ------
      0.056   13.0   0.1       0.06   12.9   0.1    1.1  1  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF03881.9  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.2e-21   5.5e-18     147     227 ..       1      85 [.       1      89 [. 0.88

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 1.2e-21
                  HHHHHT---HHHHHHH-------HHHHHHHHHHHCTT.-------B----SGGGEEEETTE.....EEE-S---B---THHHHHHH CS
    PF03881.9 147 FfaeqRlgvqlelakekglkfakieelvekvaellsk.hqpkpsllHGdLWsgNaaltadgs....pvvfDPavyygdrEvdlamt 227
                  F+ + Rl+ q +la +  ++   +++  +++++++s+ +++ ps lHGdLWsgN++ + +g+    p++fDPa+yyg++E++ +m+
  MMETSP0890-20130614|40086_1   1 FWVKYRLEHQANLAGDPAIS-RLVDQCADRIHHFFSDeESIVPSCLHGDLWSGNINSVVNGDgqisPTIFDPACYYGHHEAEWGMS 85 
                  99999***999999988876.46788999999988751679****************999877899******************97 PP

>> PF02958.15  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-06    0.0092     188     240 ..      14      68 ..       2      69 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2e-06
   PF02958.15 188 a..ekleklkenlferlaelveenesefnvLnHGDlwvnNimfkydeegepedvi 240
                  a   ++ +l +++ +r+ ++++++es +   +HGDlw+ Ni    +  g+++ +i
  MMETSP0890-20130614|40086_1  14 AgdPAISRLVDQCADRIHHFFSDEESIVPSCLHGDLWSGNINSVVNGDGQISPTI 68 
                  2458999**********************************88888888777766 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.3e-05      0.06     147     207 ..      18      85 ..       2      89 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHHHHHHHC......SS--EEB-SS-SGGGEEEE.TTTTEE..EE---TT-BBE-TCHHHHCC CS
   PF01636.18 147 eleervlaalaallpg......aeppvllHgDlhpgNllvd.pddgrv..gviDfedaglgpplyDlasl 207
                  ++ + + +++a++ +       +  p+ lHgDl++gN+     +dg++   ++D  +  +g+ ++++++ 
  MMETSP0890-20130614|40086_1  18 AISR-LVDQCADRIHHffsdeeSIVPSCLHGDLWSGNINSVvNGDGQIspTIFDPAC-YYGHHEAEWGMS 85 
                  4444.99999999999999988889999*********95555588998899999864.566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       187  (0.0136776); expected 273.4 (0.02)
Passed bias filter:                      180  (0.0131656); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.82
# Mc/sec: 263.01
//
Query:       MMETSP0890-20130614|40089_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-17   62.1   0.0    4.7e-17   61.2   0.0    1.5  1  PF00355.21 Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> PF00355.21  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   3.4e-21   4.7e-17       1      94 [.      57     155 ..      57     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 3.4e-21
                  CEEEEEEGGGSCCTCEEEEEEGGSEEEEEECTCC-EEEEESB-STSS-BTTECEBCSCTTCEEE-STTSSEEETT--EEEESTTCS........-SCEEBEE CS
   PF00355.21   1 swlevareeeipepgdgkttklgedlvvvrdkdgeivalnniCtHrgcplsegkaggekggvleCpcHgwaydlatgkvvkgpatk........vlklypvk 94 
                  +w++ a  e ++e+ ++    +g++lv+++++++ ++ +++ C+Hr +plseg  ++e++g+l C +H w+++++ g +v++p+ k         +++ypv+
  MMETSP0890-20130614|40089_1  57 QWYPMAVTEFLDEKRPLPMQLMGKSLVAWKSEQQGWKIFDDACPHRLAPLSEG--RVENDGTLLCAYHAWRFNAD-GTCVSMPQAKdlenfatcSVPSYPVR 155
                  5888888889999777777777********99999******************..5777788***********77.********987777777766776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:00.66
# Mc/sec: 1209.07
//
Query:       MMETSP0890-20130614|40092_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00033   20.0   0.0     0.0006   19.2   0.0    1.4  1  PF00076.17 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
    0.00038   19.9  14.9     0.0073   15.8   1.7    2.4  2  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0005   19.4  12.3    0.00052   19.3   8.5    1.1  1  PF04652.11 Vta1 like
     0.0059   16.3   0.0      0.009   15.7   0.0    1.3  1  PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  ------ inclusion threshold ------
       0.25   11.0   4.3       0.16   11.6   1.3    1.9  2  PF11478.3  Antimicrobial chitin binding protein tachystatin B


Domain annotation for each model (and alignments):
>> PF00076.17  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.2e-07    0.0006      13      69 ..      59     115 ..      57     116 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.2e-07
                  HHHHHHHCTCTCEEEEEEEESTTSSEE-EEEEEESSHHHHHHHHHHHTTEBETTEBE CS
   PF00076.17  13 eeLkelFskfGpiesiklvrdetgrskgfafVeFeseedaekAlealngkklggrel 69 
                  ee+++ ++kfG+ie+++++ +  +   g  + +F++ee  ++Al+ l g+ + gr+l
  MMETSP0890-20130614|40092_1  59 EEVYDELGKFGEIEELNVCENLGDHMVGNVYAKFADEEHTDAALKGLFGRFYAGRPL 115
                  79999***************9999999***************************987 PP

>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   3.3   0.00025      0.69      13      26 ..       1      14 [.       1      15 [. 0.92
   2 !   15.8   1.7   2.7e-06    0.0073       2      25 ..     126     148 ..     125     150 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00025
                 ---------SS--- CS
   PF00642.19 13 GtCpyGdrCkFaHg 26
                 G+C++GdrC++ H 
  MMETSP0890-20130614|40092_1  1 GACRHGDRCSRQHH 14
                 89***********7 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.7e-06
                  -S---SGGGG----------SS-- CS
   PF00642.19   2 ktelCrffartGtCpyGdrCkFaH 25 
                  ++++Cr + +   C +G+ C+F+H
  MMETSP0890-20130614|40092_1 126 REARCRQYDE-AVCTRGGYCNFMH 148
                  6799******.************* PP

>> PF04652.11  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   8.5   1.9e-07   0.00052     166     333 ..     169     330 ..      40     349 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.9e-07
                  ................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX....................................................XXXXXXXXXXXHHHHHH.. CS
   PF04652.11 166 eeipdeqe..aqesldssslpgeassasaspksaeesseslpsdplsaedsdssapgldadeasaspseapssspgvpsfp.spdeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssssppsteapssppvqapsapakpslssakPtaqsassaqaqplqsv 333
                  ++ + e++  +++s+d+ s++  +++++++p++++e+++   +      ++d + +   + ++s+ +++++s++  +p    s  + +a +k+s+ ++    ++++ + s+ + Pp+++++++ +++  ++e+p++++ +  +++++++ + + P+ +   + + q++++ 
  MMETSP0890-20130614|40092_1 169 KKNKRENDqvDEQSNDDASHQAPPTDDRKRPRETTEDEDHARPRRHR--EYDRDRSRDRSRDRSRRSQNDDSYHDRPPRDDySRNYVNAADKESSHTN----HSESIQPSEYDRPPKDYNDRRLPTA--DYERPPHNHSGDHPSSSNTEYKYQPPQTSY-AAHYDQSHDQD 330
                  23333333568899999999999999999999999999988888655..4444444444444444444444444443333223333333222333333....4466666888999999988888877..666666666544444444444444444443.33334333332 PP

>> PF13893.1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-06     0.009       1      56 []      61     120 ..      61     120 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.3e-06
    PF13893.1   1 LyklfskfGkverikifrkk.....ggqAfvefdtveaArkakeylngvklygktLkveys 56 
                  +y+ + kfG++e+  +++ +      g ++ +f+++e  + a++ l g+ + g++L +e+s
  MMETSP0890-20130614|40092_1  61 VYDELGKFGEIEELNVCE-NlgdhmVGNVYAKFADEEHTDAALKGLFGRFYAGRPLVCEFS 120
                  58999***********98.5599999******************************99997 PP

>> PF11478.3  Antimicrobial chitin binding protein tachystatin B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   4.1e+03      10      18 ..     106     114 ..     102     119 .. 0.71
   2 ?   11.6   1.3   5.8e-05      0.16       6      25 ..     125     144 ..     122     147 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.5
    PF11478.3  10 rCrvysGrs 18 
                    r y+Gr 
  MMETSP0890-20130614|40092_1 106 FGRFYAGRP 114
                  569999995 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 5.8e-05
    PF11478.3   6 frGarCrvysGrsCCfGyyC 25 
                  fr arCr y    C  G yC
  MMETSP0890-20130614|40092_1 125 FREARCRQYDEAVCTRGGYC 144
                  9******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       782  (0.0571972); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:01.45
# Mc/sec: 578.43
//
Query:       MMETSP0890-20130614|40097_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:00.76
# Mc/sec: 1163.49
//
Query:       MMETSP0890-20130614|40095_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       239  (0.017481); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 1354.30
//
Query:       MMETSP0890-20130614|40102_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-12   45.8   0.0    7.1e-12   45.5   0.0    1.0  1  PF04577.9 Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> PF04577.9  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   5.2e-16   7.1e-12     136     202 ..      13      80 ..       4      84 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 5.2e-16
    PF04577.9 136 vdpeelsfeeQvalfssakvivgphGsgLtnllFappgtrvlelvsp.prldlefenlaallgldyvy 202
                  +d ++l+f++Q+ +  +++++vgphG+gL + +F+p  ++++el+   ++ +++f n+a++ g +y++
  MMETSP0890-20130614|40102_1  13 IDYSTLDFRQQILTDIDTDIMVGPHGAGLLHNIFMPDRAALVELFIDsSQANRHFHNFAKWQGRKYFS 80 
                  7899*******************************999******7664556666*********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 312.86
//
Query:       MMETSP0890-20130614|40100_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-22   78.8   0.4    4.7e-22   78.8   0.3    1.7  2  PF00112.18 Papain family cysteine protease
     0.0037   15.7   0.0     0.0048   15.3   0.0    1.1  1  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.3   6.9e-26   4.7e-22     131     212 ..       2      84 ..       1      92 [. 0.89
   2 ?    0.3   0.1      0.07   4.8e+02      64      91 ..      92     116 ..      81     140 .. 0.65

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 6.9e-26
                  HHH-S-EEEEE--CCHCCTTEEE--BSSTCC-T.TG--EEEEE---BSCT..TC-EEEEE-SB-TT------EEEESSSSSGGGT CS
   PF00112.18 131 lakngPvsvaidaseedfqlYksGvyketecss.telnhavlivGygven..gkkyWivkNSWgtdwGekGYiriargknnecgi 212
                  l+  gP+++++das++  + Y+sG+y++ ++s+ ++lnh v++vGyg ++  ++ y++v+NSWgt+wGe+GYir++r +  +c  
  MMETSP0890-20130614|40100_1   2 LVDIGPLTINVDASNW--HDYESGIYDGCSASNiSDLNHVVQLVGYGYDSdyDSAYFLVRNSWGTSWGEHGYIRLKRTSTPTCAT 84 
                  56789*********95..9*********86666789***********99988999**********************99989975 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.07
                  -TT----HHHHHHHHHHC---BBTTTS- CS
   PF00112.18  64 egCnGGlmenafeyikknggivtekdyp 91 
                  +gC+GG  +   +y+  + g+  + +yp
  MMETSP0890-20130614|40100_1  92 TGCKGGSAT---QYVCGECGVLFDVSYP 116
                  499999654...4555555665555555 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     7e-07    0.0048     355     396 ..      32      73 ..      28      78 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7e-07
   PF03051.10 355 geslmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                  + s ++H + l+g   d+d ++  + v nsWG   Ge+Gy  
  MMETSP0890-20130614|40100_1  32 NISDLNHVVQLVGYGYDSDYDSAYFLVRNSWGTSWGEHGYIR 73 
                  56889***********************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 507.88
//
Query:       MMETSP0890-20130614|40096_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       143  (0.0104593); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:00.97
# Mc/sec: 158.11
//
Query:       MMETSP0890-20130614|40109_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-11   43.5   4.3    3.2e-11   42.6   3.0    1.5  1  PF13639.1  Ring finger domain
    9.6e-09   34.4   1.1      2e-08   33.4   0.8    1.5  1  PF02825.15 WWE domain
      2e-07   30.9   6.4    3.6e-07   30.1   4.5    1.4  1  PF12678.2  RING-H2 zinc finger
    3.4e-06   26.6   2.4    6.8e-06   25.6   1.6    1.5  1  PF13923.1  Zinc finger, C3HC4 type (RING finger)
    0.00012   21.7   4.1    0.00024   20.7   2.8    1.5  1  PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
     0.0017   17.8   2.2     0.0067   15.9   1.5    2.0  1  PF00097.20 Zinc finger, C3HC4 type (RING finger)
     0.0024   17.6   4.0     0.0094   15.7   2.8    1.8  1  PF11793.3  FANCL C-terminal domain
  ------ inclusion threshold ------
      0.025   14.3   1.2      0.058   13.1   0.3    1.9  2  PF05883.6  Baculovirus U-box/Ring-like domain
      0.027   14.3   4.2      0.065   13.1   2.9    1.7  1  PF12906.2  RING-variant domain
      0.048   13.2   3.2       0.15   11.6   2.2    1.8  1  PF13920.1  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   3.0   2.3e-14   3.2e-11       2      45 ..     163     216 ..     162     217 .. 0.93

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2.3e-14
    PF13639.1   2 eCaiCldelsegeevvrlp.C........gHvfHeeCldewlrss.nsCPlCrk 45 
                  +C+iC+d ++ ++e++  + C        +H fH +C++ wl+s  ++CP+Cr+
  MMETSP0890-20130614|40109_1 163 SCVICMDHFDASSEAISFSaClsqqnqtlSHAFHPHCINTWLKSGgGRCPVCRA 216
                  6********999999*9999*****99999*************9647******8 PP

>> PF02825.15  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.8   1.4e-11     2e-08       9      71 ..      65     127 ..      59     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.4e-11
   PF02825.15   9 vWeyedsngkWrpYspavsehIenayaakertlevdifgrpytidfksmtqlreetgttreVr 71 
                   Weye+ +g W+ Y  + s+hIe+a  a+ r   +     +y+id++   q++++tg  r+ r
  MMETSP0890-20130614|40109_1  65 DWEYEEHRGHWISYHIQASAHIEAAMTAGFRKTAICAGHDQYLIDIHRHFQTNVRTGFRRRNR 127
                  5********************************************************555544 PP

>> PF12678.2  RING-H2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   4.5   2.6e-10   3.6e-07      21      75 .]     163     215 ..     140     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.6e-10
    PF12678.2  21 nCaiCrneleelcpeckapgksdecpv.awgeCgHaFHlhCiskWlktrk.tCPlcr 75 
                   C+iC  +++ +     ++     c      + +HaFH hCi++Wlk+    CP+cr
  MMETSP0890-20130614|40109_1 163 SCVICMDHFDASSEAISFSA----CLSqQNQTLSHAFHPHCINTWLKSGGgRCPVCR 215
                  4********77776666666....4442444479*************9999*****8 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   1.6     5e-09   6.8e-06       3      45 ..     162     215 ..     161     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 5e-09
    PF13923.1   3 fsCpiCleelen...pviltpCg........HlyCkkCieqwlekskkkCPiCr 45 
                  +sC+iC++++     ++ +  C         H ++  Ci  wl++   +CP+Cr
  MMETSP0890-20130614|40109_1 162 LSCVICMDHFDAsseAISFSACLsqqnqtlsHAFHPHCINTWLKSGGGRCPVCR 215
                  58********777776667788566778898**************999*****9 PP

>> PF12861.2  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   2.8   1.7e-07   0.00024      24      83 ..     164     220 ..     152     222 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.7e-07
    PF12861.2  24 cGicrvsfdGtcpsckfpGddcplvlGk.ckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                  c ic  +fd +     f    c     +  +h+fh hci +wl++    g+cp+cr ++++
  MMETSP0890-20130614|40109_1 164 CVICMDHFDASSEAISFS--ACLSQQNQtLSHAFHPHCINTWLKS--GGGRCPVCRASLHI 220
                  777777777777766664..34433333379************86..5699*****98765 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.5   4.9e-06    0.0067       1      41 []     164     214 ..     164     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.9e-06
                  -TTTSSS-SSEE............BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20   1 CpiCleeakepn...........elleCkHsfCskCirkilksrkkvkCPlC 41 
                  C iC++ +   +           +  +  H+f+ +Ci ++lk ++   CP+C
  MMETSP0890-20130614|40109_1 164 CVICMDHFDASSeaisfsaclsqQNQTLSHAFHPHCINTWLK-SGGGRCPVC 214
                  66777777666666666666666445558*************.88899**** PP

>> PF11793.3  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.8   6.8e-06    0.0094       4      59 ..     163     226 ..     161     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.8e-06
                  S-SSS--SS-.-------B--...S-TT----B-SGGGHHHHHH....HH----TTT------T CS
    PF11793.3   4 eCgiCyayrl.dsgevpdisC...dnekCnkkfHaaCLkeWlrs....lkesrqsfdvlfGeCP 59 
                  +C iC+ +++ +s++++  +C   +n+  ++ fH +C++ Wl+s     +  r s++++ G+ P
  MMETSP0890-20130614|40109_1 163 SCVICMDHFDaSSEAISFSAClsqQNQTLSHAFHPHCINTWLKSgggrCPVCRASLHIMTGTQP 226
                  7*******99445667788886667888999************833334667888888888766 PP

>> PF05883.6  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   1.6e+03      48      75 ..     105     132 ..      97     147 .. 0.81
   2 ?   13.1   0.3   4.3e-05     0.058      16      66 ..     151     204 ..     136     217 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.2
    PF05883.6  48 kgtldleklfhkeClkrfkrekkrDPfk 75 
                  +  +d+ + f ++  + f+r ++r P +
  MMETSP0890-20130614|40109_1 105 QYLIDIHRHFQTNVRTGFRRRNRRVPNN 132
                  5678999999999999999999998854 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.3e-05
    PF05883.6  16 klfkelfkevsveCaiCldeieenkGvvavt...ekgtldleklfhkeClkrfk 66 
                  +  +e+ +++ + C iC+d+ + ++  +  +   ++++  l + fh +C++ + 
  MMETSP0890-20130614|40109_1 151 THCTEEAQRLGLSCVICMDHFDASSEAISFSaclSQQNQTLSHAFHPHCINTWL 204
                  5556667778899**********77667655222467788*************4 PP

>> PF12906.2  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.9   4.8e-05     0.065       1      47 []     164     214 ..     164     214 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.8e-05
                  ETTTTEE-----..------.....---TTS--HHHHHHHHHHHT-SB-S-- CS
    PF12906.2   1 CriCleeeeeseplirpCkC.....kGslklvHesCleeWlkesaktkCelC 47 
                  C+iC+++ + s++ i+   C     ++  + +H +C+++Wlk s+  +C +C
  MMETSP0890-20130614|40109_1 164 CVICMDHFDASSEAISFSAClsqqnQTLSHAFHPHCINTWLK-SGGGRCPVC 214
                  9*****999999777766663222223356899*********.555569999 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   0.00011      0.15       4      46 ..     163     217 ..     160     220 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
    PF13920.1   4 tCvvCler....eadvlllpC........gHlclCeeCaerllk.rkkkCpiCrsp 46 
                  +Cv+C+++     + + +  C         H+ +   C + +lk    +Cp+Cr++
  MMETSP0890-20130614|40109_1 163 SCVICMDHfdasSEAISFSAClsqqnqtlSHA-FHPHCINTWLKsGGGRCPVCRAS 217
                  7******7433333355555544444444699.*******9999899*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:01.15
# Mc/sec: 749.89
//
Query:       MMETSP0890-20130614|40117_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    7.9   9.1        9.7    6.3   0.1    2.2  2  PF11595.3 Protein of unknown function (DUF3245)


Domain annotation for each model (and alignments):
>> PF11595.3  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1   0.00071       9.7      19      47 ..      72     100 ..      59     103 .. 0.87
   2 ?    3.7   3.3    0.0043        59     105     131 ..     136     160 ..     126     162 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00071
    PF11595.3  19 netaseqsdekktdeelqkeedeiftavp 47 
                  ++t++++s++k+ d e  ++e+  ftav 
  MMETSP0890-20130614|40117_1  72 DTTEDVSSHPKEPDYEILQKEEVRFTAVG 100
                  5699************99999999***95 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0043
    PF11595.3 105 krkaakvakeekekakevkddddddde 131
                  k++++ +a++++e+++  kd+ddddd+
  MMETSP0890-20130614|40117_1 136 KDDNVPLAEDNSENKA--KDNDDDDDD 160
                  4455555555444444..666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      347  (0.0253803); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.44s 00:00:00.89 Elapsed: 00:00:00.72
# Mc/sec: 542.51
//
Query:       MMETSP0890-20130614|40116_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       288  (0.021065); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.37s 00:00:00.78 Elapsed: 00:00:00.89
# Mc/sec: 341.95
//
Query:       MMETSP0890-20130614|40122_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   11.5   1.6      0.067   11.3   1.1    1.0  1  PF07888.6  Calcium binding and coiled-coil domain (CALCOCO1) like
      0.081   10.1   5.2      0.092    9.9   3.6    1.0  1  PF12128.3  Protein of unknown function (DUF3584)
       0.32   10.2   3.4       0.46    9.7   2.4    1.1  1  PF03357.16 Snf7
       0.41    8.5   3.3        0.5    8.2   2.3    1.1  1  PF10070.4  Uncharacterized protein conserved in bacteria (DUF2309)
        1.3    8.8   5.8        1.9    8.3   4.0    1.2  1  PF03938.9  Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> PF07888.6  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.1   2.5e-05     0.067     174     279 ..       9     115 ..       2     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
    PF07888.6 174 eeLeaaLatsekkt.eeLkekykeissseeeiseerniLsaqraenrerileLeddiqtlskkvreqeklleqlkeikaelerekaelkqrlkektvqikdeeteai 279
                  + L+a L+ + +   ee + +  ++++ ++e+ + ++++  +ra++ er+++  + i  l+++    ek l+   +++ ++++ +a l+ r    t++    + +++
  MMETSP0890-20130614|40122_1   9 RVLQARLDAAGRALdEEREARQTDVERLRGELRNAKQVFAVERAKLTERLRDDANTISDLTDRAITLEKQLQTRPNLNLSKQTADAFLQARSAAETLDFYARKRRRK 115
                  45777787776654155666788999999999999999999999999999999999999999999999999999999999999999999998888887765555555 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.6   3.3e-05     0.092     261     346 ..       4      89 ..       1     106 [. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.3e-05
    PF12128.3 261 lllkLqllhvelkadeerleeeqeevkeakkelkeqlrtledelkeasdelnqelsaanakleakeselealeeqkkkfedkdiek 346
                  + ++L++l++ l a+ ++l ee+e++++  ++l+ +lr+ ++ ++ ++++l+++l +  + ++   ++   le+q ++  + +++k
  MMETSP0890-20130614|40122_1   4 ASAELRVLQARLDAAGRALDEEREARQTDVERLRGELRNAKQVFAVERAKLTERLRDDANTISDLTDRAITLEKQLQTRPNLNLSK 89 
                  67899**********************************************************99999999999988755555555 PP

>> PF03357.16  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.4   0.00017      0.46       4      91 ..      13      99 ..      11     105 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00017
   PF03357.16  4 lsLrkaerelekkqeslekkikkleaelkklakkgnkdrAlllLkqkkryekqldqldgqlanleqvalaienaksnkevlnamkqga 91
                  +L  a r l+ ++e  ++ +++l+ el+++++    +rA+l   +++   + +++l +  ++le+++ +  n++  k++++a  q+ 
  MMETSP0890-20130614|40122_1 13 ARLDAAGRALDEEREARQTDVERLRGELRNAKQVFAVERAKL-TERLRDDANTISDLTDRAITLEKQLQTRPNLNLSKQTADAFLQAR 99
                 679999**********************************86.588999999*****************************9987665 PP

>> PF10070.4  Uncharacterized protein conserved in bacteria (DUF2309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.3   0.00018       0.5     583     657 ..      24     100 ..      17     111 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00018
    PF10070.4 583 klpeshrealerlkadlaeaselaaaERarrLesaerkdskdalaeverraedw...sevRPEwglAgnaa.fiigrRe 657
                  +  e+ + ++erl+ +l++a++  a ERa+  e  + +d++++ +++  ra  +    ++RP ++l++ +a ++   R+
  MMETSP0890-20130614|40122_1  24 EEREARQTDVERLRGELRNAKQVFAVERAKLTE--RLRDDANTISDLTDRAITLekqLQTRPNLNLSKQTAdAFLQARS 100
                  45678899********************87766..444446889999999965522269********865424444455 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.0   0.00069       1.9      35     115 ..      16     108 ..       4     115 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00069
    PF03938.9  35 kelqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeaekakeeelqakeqelqayaqqlqae.............lqaeqqevlqkli 115
                   ++ + l+ee ++ q+++++ + el++ ++ +  era+l++ +++   + +        + ++qlq +             lqa+ ++++ +++
  MMETSP0890-20130614|40122_1  16 DAAGRALDEEREARQTDVERLRGELRNAKQVFAVERAKLTERLRDDA-NTISDLTDRAITLEKQLQTRpnlnlskqtadafLQARSAAETLDFY 108
                  466788899999*************************9999987654.4555555555555555554344444444444446666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       625  (0.0457139); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.40s 00:00:00.96 Elapsed: 00:00:01.29
# Mc/sec: 351.09
//
Query:       MMETSP0890-20130614|40130_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-60  203.6   0.0    1.5e-60  203.3   0.0    1.1  1  PF06026.9 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)


Domain annotation for each model (and alignments):
>> PF06026.9  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.0   1.1e-64   1.5e-60       1     172 [.      72     257 ..      72     258 .. 0.95

  Alignments for each domain:
  == domain 1    score: 203.3 bits;  conditional E-value: 1.1e-64
                  EBEB-SSHHHHHHHHHTT-B-B-GGGSSSEEEEEE---EE-TTS-EE------HHHHHHHHCTEEEEEEEEEGGGB-SSC-.SS-EEEEE-GGGHHHHHHHHHH....HCT.EEEE-B---........-B---TTS-EEEEEESS.-BSSHHHHHHHHHT-----B---B-S.-SEEEEE----- CS
    PF06026.9   1 ivgvptSekteelakelgiplldldeveeldlaiDGaDevdeklnliKGgGgallrEKivasaakkfivivdesKlvekLG.kfplPvEvvpfavkavlrklee....elgleaklRekek........gpvvTdngnyilDvkfk.eiedpeelekelkaipGVvetGlFlkmadkvivgtkdgv 172
                  i++vptS +t+e+a++lgipl++lde+++ld+aiDGaDevd++lnl+KGgGgallrEK+v+ +a+kfivivdesKl++ LG  fp+PvE+ pf++++++r +e+    +  ++a lR +++        +p vTdngnyilD++f+  +ed+ +++++lk++ GV+e+GlF++m+++vi++ +dg+
  MMETSP0890-20130614|40130_1  72 IIAVPTSIRTKEQAESLGIPLSTLDEYSTLDVAIDGADEVDPQLNLVKGGGGALLREKMVEIVADKFIVIVDESKLCDALGpGFPIPVEITPFCHEHTKRVVENlpalKGKCKAVLRLGSStnnqvdgdEPAVTDNGNYILDLQFEnPLEDAPAAAEQLKNTCGVLEHGLFIGMTTAVIIAGTDGI 257
                  689******************************************************************************99**************999999988765567889998776777888999****************899********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       344  (0.0251609); expected 273.4 (0.02)
Passed bias filter:                      332  (0.0242832); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 947.65
//
Query:       MMETSP0890-20130614|40129_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-20   71.3   1.6    3.8e-20   71.3   1.1    1.6  2  PF00301.15 Rubredoxin
  ------ inclusion threshold ------
       0.26   10.8   1.0         14    5.2   0.1    2.1  2  PF08646.5  Replication factor-A C terminal domain


Domain annotation for each model (and alignments):
>> PF00301.15  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.1   7.5e+03      15      26 ..      21      32 ..      19      33 .. 0.77
   2 !   71.3   1.1   5.6e-24   3.8e-20       2      47 .]      74     119 ..      73     119 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.1
                 GGTTT------- CS
   PF00301.15 15 egdpdegippgT 26
                 egd  + +p++T
  MMETSP0890-20130614|40129_1 21 EGDGTKTVPQET 32
                 688888899888 PP

  == domain 2    score: 71.3 bits;  conditional E-value: 5.6e-24
                  EEEST---EEETTGGTTT--------GGGS-TT-B-ST---BGGGE CS
   PF00301.15   2 yeCkvCgyvydpaegdpdegippgTpFedlpddWvCPvCgagkeqF 47 
                  y CkvC y ydp+ g+p  gi+pgTpF++lp+ W+CP C a+k++F
  MMETSP0890-20130614|40129_1  74 YICKVCSYKYDPEVGQPIGGIQPGTPFSQLPASWRCPTCRAQKDAF 119
                  99******************************************99 PP

>> PF08646.5  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0021        14      28      48 ..      64      84 ..      58      91 .. 0.87
   2 ?    4.3   0.1    0.0038        26      36      53 ..     105     122 ..      95     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0021
                 -B-EE-----EEETTTTEEES CS
    PF08646.5 28 kKvveeedgewrCekCdkeve 48
                  K +e+e+g + C+ C  +++
  MMETSP0890-20130614|40129_1 64 EKFIEQETGIYICKVCSYKYD 84
                 699*************98874 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0038
                  --EEETTTTEEESS--EE CS
    PF08646.5  36 gewrCekCdkeveepkyr 53 
                   +wrC++C ++ + ++ +
  MMETSP0890-20130614|40129_1 105 ASWRCPTCRAQKDAFEPQ 122
                  57******9998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       555  (0.0405939); expected 273.4 (0.02)
Passed bias filter:                      483  (0.0353277); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.40s 00:00:00.86 Elapsed: 00:00:00.65
# Mc/sec: 623.05
//
Query:       MMETSP0890-20130614|40131_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-08   34.2   7.2    5.4e-08   32.4   5.0    1.7  1  PF04535.7  Domain of unknown function (DUF588)
    2.7e-07   30.4   0.1    3.4e-07   30.0   0.1    1.1  1  PF01284.18 Membrane-associating domain


Domain annotation for each model (and alignments):
>> PF04535.7  Domain of unknown function (DUF588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   5.0   7.9e-12   5.4e-08       9     150 .]      19     163 ..      17     163 .. 0.71

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 7.9e-12
    PF04535.7   9 lvLRlaavvlalaaavvmatnkqtktvfsiqvkakfsdlpafvylvvanaiaavYsllqlvlsvvslvrkk.ersaalalllfllDq..vlaylllsAasAaaavvyla...........kkgnseaqWlkiCnqfgkFcervaaavalsflafll 150
                   vLR+a v+ +l++ +v+a+++ +     + ++ ++++++ +++l++a+++ ++++l  ++l+  + v+ + +  ++  l+  +l +  + ++ l+ Aa+++  + + +           + ++s        ++++ Fc++v+aav +sf+a+++
  MMETSP0890-20130614|40131_1  19 PVLRVAEVFSSLLSWTVLAAAHRA----GYGGAYEYDSYTNLKFLLTASILHCLFALGIALLKRSKSVVDSdT-FEKIELYGSALSLllIYSGALAGAAASTQNHDEFGehdnsichprpHANES------EKRKADYFCSHVSAAVTFSFFAVFA 163
                  69*********************5....99**********************************999987753.333333333333300333444444444444444554444443333322211......23577889**************985 PP

>> PF01284.18  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1     5e-11   3.4e-07       7     144 .]      19     170 ..      15     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 5e-11
   PF01284.18   7 gilrilqlvfaiiilglvaslia..kldqllgspssalnfavfvavfsflyalallvlylfk..nkyftsilwplidlivdalaallwlvafialaaglrgvsca.................fesnqgsaslkvrcgsaqaavaFgflavllflasavl 144
                   +lr+++++ +++ +   a++    +   + +++++ l+f ++++++  l+al++ +l   k  ++ ++s  ++ i+l  +al  ll   ++ a aa+ ++ + +                 +  ++++ + +  c++  aav F+f+av++ ++s++l
  MMETSP0890-20130614|40131_1  19 PVLRVAEVFSSLLSWTVLAAAHRagYGGAYEYDSYTNLKFLLTASILHCLFALGIALL---KrsKSVVDSDTFEKIELYGSALSLLLIYSGALAGAAASTQ-N-HdefgehdnsichprphaN--ESEKRKADYFCSHVSAAVTFSFFAVFASTGSLIL 170
                  589********99999999988766333344667888888888888888877777766...4479****************************99999999.3.2479999888876665432..5666667778******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.60
# Mc/sec: 990.49
//
Query:       MMETSP0890-20130614|40135_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   67.1   0.0    2.5e-18   66.5   0.0    1.3  1  PF00857.15 Isochorismatase family


Domain annotation for each model (and alignments):
>> PF00857.15  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.8e-22   2.5e-18       2     155 ..     114     279 ..     113     293 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.8e-22
   PF00857.15   2 alvviDmqndflegvleseeieavvenikkllkaarkagipviftrdvhe........leeakgdle.kkkasphfepgttgaelvdelaplegdvvvd..Kt.rysaf......agtdldeiLkelgiktlvlaGiatdvCVeatardaldl.GyevvvvsDAvaalspelh 155
                  +l++ Dm+n++       + ++ v++++++l++a+r++++p+i+t++           ++++ g++  k + +p+ + g++ +e v el p+ +d++    K+ + s f       ++ l   Lk+ g++t+vlaG++td C++at+ da+d+ G++v+ v D+va+ + + h
  MMETSP0890-20130614|40135_1 114 VLIMEDMENGYR------PYVDFVIPRCVELVRAFREKDWPIIWTNWIRVphdkaygaIDRFYGPQGiKTQENPCYVYGPRPTETVAELSPQNNDEFSRtiKSlHLSKFadfdekGNSILYPRLKSWGVDTIVLAGAWTDDCILATVFDAVDKyGFDVINVIDGVATTTHN-H 279
                  588889999999......88999***********************9988899*****6666655551667788889***************877655545558899999999999999999*********************************************9944.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       512  (0.0374488); expected 273.4 (0.02)
Passed bias filter:                      437  (0.0319631); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.98
# Mc/sec: 1046.57
//
Query:       MMETSP0890-20130614|40143_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00092   18.1   0.0     0.0011   17.8   0.0    1.1  1  PF03918.9 Cytochrome C biogenesis protein
     0.0099   15.8   0.0      0.013   15.4   0.0    1.1  1  PF11669.3 WW domain-binding protein 1
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.13   12.0   0.0    1.2  1  PF11837.3 Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> PF03918.9  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.4e-07    0.0011      98     133 ..      31      71 ..      26      88 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.4e-07
    PF03918.9  98 kpstllLWlgPllllllgllvlllvlrrrrrkkae.....e 133
                  +p++ +LWl+P+++++l++++l +++r ++ ++++      
  MMETSP0890-20130614|40143_1  31 RPNNQWLWLLPAVIFVLMVIALCRTFRTQQPNSSQedddgI 71 
                  57899*********************999887765444441 PP

>> PF11669.3  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-06     0.013      22      69 ..      35      81 ..      32     101 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.8e-06
    PF11669.3 22 WyfWlvwvliiilallcayslrrkkrrlqeqqrqseidliayreasns 69
                  ++Wl+ ++i++l ++  ++  r+++   +q+    i+ ++y +++++
  MMETSP0890-20130614|40143_1 35 QWLWLLPAVIFVLMVIALCRTFRTQQPNSSQEDDDGIE-LSYASSTSK 81
                 69*********************998765555554444.445544444 PP

>> PF11837.3  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.8e-05      0.13      22      75 ..      26      79 ..       7      89 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.8e-05
    PF11837.3 22 sarrrrplkvllavlsslllllllvallvvskgqspdgdeaaessseespesaa 75
                 + +  rp    l +l +++++l+++al  +  +q+p+++++ ++  e s +s++
  MMETSP0890-20130614|40143_1 26 PDTVGRPNNQWLWLLPAVIFVLMVIALCRTFRTQQPNSSQEDDDGIELSYASST 79
                 3555578889999999************55555555555555554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       487  (0.0356202); expected 273.4 (0.02)
Passed bias filter:                      456  (0.0333528); expected 273.4 (0.02)
Passed Vit filter:                        53  (0.00387654); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.84
# Mc/sec: 316.66
//
Query:       MMETSP0890-20130614|40146_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 223.87
//
Query:       MMETSP0890-20130614|40152_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   23.0   0.2    7.3e-05   21.9   0.1    1.5  1  PF13193.1  Domain of unknown function (DUF4009)
  ------ inclusion threshold ------
       0.14   10.4   0.2       0.18   10.0   0.2    1.2  1  PF00501.23 AMP-binding enzyme


Domain annotation for each model (and alignments):
>> PF13193.1  Domain of unknown function (DUF4009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.1e-08   7.3e-05       1      31 [.      63      92 ..      63      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.1e-08
    PF13193.1  1 ykvPreveFVdeLPKTrSGKIlRRlLRaial 31
                 +k+P+ v+F + +P T +GKI++ +LR+ a+
  MMETSP0890-20130614|40152_1 63 FKIPKTVIFGP-IPTTSTGKIQKFALREQAK 92
                 68999999975.****************887 PP

>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   2.6e-05      0.18     396     418 .]       1      23 [.       1      23 [. 0.95

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.6e-05
                  -EEEHHHHHHHHHTSTTEEEEEE CS
   PF00501.23 396 eniepgeiEsallehpgvaeaaV 418
                  eni++ e+E+al++hp +  aaV
  MMETSP0890-20130614|40152_1   1 ENISTIEVEDALMSHPEIVLAAV 23 
                  8*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       223  (0.0163107); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:00.54
# Mc/sec: 430.46
//
Query:       MMETSP0890-20130614|40150_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   14.9   0.6       0.33   10.3   0.4    2.5  1  PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PF00006.20  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   2.4e-05      0.33       1     185 [.     140     332 ..     140     341 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.4e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..xxxxxxxx RF
   PF00006.20   1 tgirvlDslfPivqGqttlipGafgcGktvisqslsknsnsdai..iyvgiGergnevaevleefrkepimkrttlvantsnepvaareasiytgitlAeyfrdqgknVlliaDslsrwaealrei..........sgr.lgempadqgypaylgaklaslyeRagkagspdriGSvtivaa..vspaggdf..sdpvttst 185
                  tg+  +D+++Pi++Gq +l +G+  +  +      ++  +++    + + + +  +++++  ++ r  +   +  +  ++      + +++   +++l+ +++ +g++ l+i+D    +    r +          s+r l++   + g + +  a  +s+++R+g++   +++GS+ i+ +  + p+++++  s pv +++
  MMETSP0890-20130614|40150_1 140 TGVPFIDAVTPIGKGQSCLFVGPTSA-LSNCREAAIRAVRAQSPdeVTCIVAQLDDQMKQYPDNTRILETSLNCDVLEAQC-----NALLTTHSALALGTKIMRSGRDALVILDTFAPLLSLWRRCaligestttmSSRiLDKEIDSLGADSECRAFFSSILQRSGRL---KKGGSLAIISIacADPNEQQInqSTPVQDKV 332
                  89999***********9999988653.233333333333333333344444444444444444443222222222222222.....2344556678888888999999999888765544444433000000000022213333444577777778888888888888...8888888877633555555554445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.38s 00:00:01.27 Elapsed: 00:00:00.67
# Mc/sec: 2010.08
//
Query:       MMETSP0890-20130614|40163_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       358  (0.0261849); expected 273.4 (0.02)
Passed bias filter:                      288  (0.021065); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 921.01
//
Query:       MMETSP0890-20130614|40167_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.81
# Mc/sec: 278.10
//
Query:       MMETSP0890-20130614|40177_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-15   54.7   0.1    5.6e-15   54.4   0.0    1.0  1  PF00501.23 AMP-binding enzyme
  ------ inclusion threshold ------
      0.059   11.7   0.0      0.076   11.4   0.0    1.2  1  PF03321.8  GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> PF00501.23  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   8.2e-19   5.6e-15     127     213 ..       7      94 ..       2      99 .. 0.90

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 8.2e-19
                  SS-----BTTTSEEEEEEE-------EEEEEEHHHHHHHHHHHHHCHT-TTTSEEEEES-.TTCCHHCTTTHHHHTTT-EEEEESSCC CS
   PF00501.23 127 teapkepldpddlayiiyTSGtTGkPKGVmlthrnllalvagiaervgltpddrvlsllp.lhfdgsilellaplllGatvvlvsped 213
                  t++ k +++pd++a+++ TSGtT kPK V lt+ +l+++ +++a +++ltp+d  l  +p +h+ g+   +la+l++ + v ++s+  
  MMETSP0890-20130614|40177_1   7 TPQNKFQQKPDHVALLLRTSGTTSKPKIVALTQSQLVTNGMALATNLELTPEDICLNAMPlFHIGGLSASILATLAAKSSVTCISGTF 94 
                  55666677****************************************************9999999**********99999998765 PP

>> PF03321.8  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05     0.076      67     106 ..       3      44 ..       1      59 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
    PF03321.8  67 iangeks.vltpek..ityfalSSGTtggksKliPvteeller 106
                  iang ++  + +++  +  ++++SGTt++ +K++ +t++ l +
  MMETSP0890-20130614|40177_1   3 IANGTPQnKFQQKPdhVALLLRTSGTTSK-PKIVALTQSQLVT 44 
                  6777777666666566999**********.*******998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       272  (0.0198947); expected 273.4 (0.02)
Passed bias filter:                      257  (0.0187975); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.43s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 281.92
//
Query:       MMETSP0890-20130614|40179_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-18   65.9   0.4    7.3e-17   61.4   0.1    2.7  2  PF08007.7 Cupin superfamily protein
    6.2e-17   61.8   0.1    1.2e-16   60.8   0.0    1.4  1  PF13621.1 Cupin-like domain
     0.0013   18.0   0.1     0.0071   15.7   0.0    2.3  2  PF07883.6 Cupin domain
  ------ inclusion threshold ------
      0.032   14.3   3.1       0.12   12.5   0.0    3.1  3  PF13759.1 Putative 2OG-Fe(II) oxygenase
       0.14   11.1   0.0       0.29   10.1   0.0    1.5  1  PF07710.6 P53 tetramerisation motif


Domain annotation for each model (and alignments):
>> PF08007.7  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.1   2.7e-20   7.3e-17       2     260 ..      34     311 ..      33     323 .. 0.77
   2 ?   -1.9   0.0       0.5   1.4e+03      24      82 ..     347     406 ..     341     414 .. 0.77

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 2.7e-20
                  HHHHHHTTTTS-EEE----HHHHHH--..----HHHHSS---.---------------------..---------------EEE.ETTEEEEE-GGGT.-HH.HHHH.HHHHHH.-----EEEEE--------SEE-SSEEEEEEEE--EEEEEE-.................-SSTT-SS-EE--TTT--....--SEEEEE----EEEE----EEEEE---..----EEEEEEEE-TT..-----HHHHH----HHHHH-HHHH----TTTTT----HHHHH CS
    PF08007.7   2 eeFlreyWqkkpllirralpafagllspddLaeLaeeeevea.rlikgerdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqLlqpfrf.epe.wrld.dvmesf.slvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvyk.................ptvpelelkseeplkildef..epvedfvLepGDlLYlPrgviHqgvaed.esltlSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaa 260
                  ++Fl+ +W k+ +++++a +++++l+   ++++L ee++ ea ++  + + k e  + ++  +++rl +++ + ++   +  ++    + +++    f +p+ + ld d    f +   +  +++ ++ +    HyD  + f lQ+ G+krW +                   p v e + k    ++  +e   +++  ++L+pGD LY+P g+ H+ ++++ + l++ ++l apt+a+l++  l  +l + +++  r+r ++ +++    +i + +++++++
  MMETSP0890-20130614|40179_1  34 KDFLQFHWRKHCVVVKGAGRKVNKLVP-RSIKRLCEESSSEAiQIWLQTKSKLETLETTDAASATRLHRAGLVLYCRAPERTEE--VLIGSMIRDTDFgLPQaADLDsDEPHHFaAWGEVECFLSHKD-HVTDFHYDFQENFTLQIRGTKRWTLRPtrhrhplrarsthfvdtPGVAEDQAKAVSFFETRNETidQHEYSVILKPGDGLYFPAGFEHRVETLSgDNLSINISLLAPTVADLIAGSLRHALLRNEDT--RKRICSHDELIGAFRIAQRALRRISQ 311
                  79******************9999998.9*************655555666666666777777789999999999999999999..556777777776446667776345566688889999999999.77789********************99999***999999996663333333333333333232234566679*****************************************98888888777776..56655555555555555555555555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.5
                  HHH--..----HHHHSS--------.----------------..---------------E CS
    PF08007.7  24 agllspddLaeLaeeeevearlikg.erdkaewkvsrgpleerrlrklpakdwtlLvqgv 82 
                    +++++ La+L+ ++ +e    k+ ++   + + s++p  +++l++   + ++lL+ + 
  MMETSP0890-20130614|40179_1 347 PAYFKINILASLLPQHAIEHTFHKNgKHRHSRTNLSTSPEFSSHLQQQRWAIFCLLHGSS 406
                  568888899999999999998888878888888888888888788888888888887655 PP

>> PF13621.1  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.6e-20   1.2e-16     118     241 ..     130     259 ..      80     263 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.6e-20
    PF13621.1 118 lpfapelfgkkpe......avnlWlGnsasssslHhDhyeNlycvvsGrKrftLfppsdapklyvaslee.sgtsvssvdvenpdl.ekfprfkdakalevelepGevLYlPalWfHeVsssseegvhiavn 241
                  lp a  l +++p+      +v  +l+ ++ ++ +H+D+ eN+  +++G+Kr+tL p  + + l  +s++  +   v++ + +++++ e  ++  d + + v l+pG+ LY Pa++ H+V+++s+++  +++n
  MMETSP0890-20130614|40179_1 130 LPQAADLDSDEPHhfaawgEVECFLSHKDHVTDFHYDFQENFTLQIRGTKRWTLRPTRHRHPLRARSTHFvDTPGVAEDQAKAVSFfETRNETIDQHEYSVILKPGDGLYFPAGFEHRVETLSGDN--LSIN 259
                  555555555555555555578899****************************************99854455555555555566554555555555**************************6555..4444 PP

>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.6   9.7e+03      51      61 ..     138     148 ..     137     152 .. 0.71
   2 !   15.7   0.0   2.6e-06    0.0071      38      65 ..     229     256 ..     221     262 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 3.6
                  TT-EBEEB--S CS
    PF07883.6  51 agtpHrfrNtg 61 
                  + +pH+f+  g
  MMETSP0890-20130614|40179_1 138 SDEPHHFAAWG 148
                  67899998765 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.6e-06
                  EEEE-TT-EEEE-TT-EBEEB--SSS-E CS
    PF07883.6  38 eveleaGdsvyfpagtpHrfrNtgdepa 65 
                   v+l++Gd +yfpag +Hr++  + + +
  MMETSP0890-20130614|40179_1 229 SVILKPGDGLYFPAGFEHRVETLSGDNL 256
                  799*****************98877655 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.12      29      99 ..     200     261 ..     179     262 .. 0.67
   2 ?   -0.7   0.0      0.57   1.5e+03      81      97 ..     274     290 ..     270     291 .. 0.91
   3 ?   -1.2   0.7       0.8   2.2e+03      11      25 ..     369     383 ..     363     395 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.3e-05
    PF13759.1  29 lkvpeesgalkfedprlsaelgapkrkeeakeplqplvvvkpkeGdlvlFpSslrHsvepneseeeRisis 99 
                  +++p+ +++     +++++++ +     ++++ +q+++ v  k+Gd + Fp+  +H+ve+ ++++  i is
  MMETSP0890-20130614|40179_1 200 VDTPGVAED-----QAKAVSFFET----RNETIDQHEYSVILKPGDGLYFPAGFEHRVETLSGDNLSINIS 261
                  555554433.....2223332222....2345678999999*********************998877776 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.57
    PF13759.1  81 slrHsvepneseeeRis 97 
                  slrH+   ne++++Ri+
  MMETSP0890-20130614|40179_1 274 SLRHALLRNEDTRKRIC 290
                  799************97 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.8
    PF13759.1  11 gyhkrHiHpnsvlSg 25 
                  + +++H H+  +lS 
  MMETSP0890-20130614|40179_1 369 HKNGKHRHSRTNLST 383
                  56889***9999996 PP

>> PF07710.6  P53 tetramerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.29       8      20 ..     168     180 ..     163     183 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
    PF07710.6   8 eEvFtLkiRGRer 20 
                  +E FtL+iRG +r
  MMETSP0890-20130614|40179_1 168 QENFTLQIRGTKR 180
                  79********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       314  (0.0229666); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.54
# Mc/sec: 2134.53
//
Query:       MMETSP0890-20130614|40182_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   18.0   0.2      0.002   17.8   0.2    1.1  1  PF03105.14 SPX domain


Domain annotation for each model (and alignments):
>> PF03105.14  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.5e-07     0.002     160     253 ..      10      96 .]       2      96 .] 0.61

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.5e-07
   PF03105.14 160 sdheamagpsnsvqakeksqekndqlqkqsndeessqesdse..........rrelsrdseslsletkfknkakrklkkalqelyrelelLksYqeLNrtAfrK 253
                  s++++ +g+ n++ + + s  +nd                            + ++++ ++ + + +     +k++lk+al el +++++L  +++ N+tAf K
  MMETSP0890-20130614|40182_1  10 SSSRRGRGNLNKNTPLRTSLSSND-----------------LihyaavaateEHDFEDPKKAERPIFRLDAAEKKSLKRALAELDQDCRDLIDFASWNYTAFVK 96 
                  444444444444444444444443.................033333333322333333333336677778899****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 377.13
//
Query:       MMETSP0890-20130614|40184_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.39s 00:00:00.69 Elapsed: 00:00:00.79
# Mc/sec: 200.20
//
Query:       MMETSP0890-20130614|40194_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:00.88
# Mc/sec: 206.96
//
Query:       MMETSP0890-20130614|40204_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:01.10
# Mc/sec: 485.81
//
Query:       MMETSP0890-20130614|40212_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   10.5   0.1       0.84    8.0   0.0    1.9  2  PF00083.19 Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> PF00083.19  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   6.2e-05      0.84     152     186 ..      23      57 ..       4      84 .. 0.88
   2 ?    0.8   0.0    0.0094   1.3e+02       8      39 ..     102     133 ..      98     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 6.2e-05
   PF00083.19 152 lvaaiiglglnktsnadgwrillglqlvpalllll 186
                  lva ++ ++l+   ++ +wr+llg+  +pa+++++
  MMETSP0890-20130614|40212_1  23 LVAILLRAALQSQDQSLQWRLLLGIGGIPAAFVVY 57 
                  7888888899888889**************88765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.0094
   PF00083.19   8 ggflfGYdtgvigatltlikfaknfglltsks 39 
                  gg +f Yd +++g tl+  ++++++++  +++
  MMETSP0890-20130614|40212_1 102 GGGWFLYDVAFYGFTLMGPSVVAECFQGDNHE 133
                  66899**************9999998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       365  (0.0266969); expected 273.4 (0.02)
Passed bias filter:                      335  (0.0245026); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.40s 00:00:00.82 Elapsed: 00:00:01.73
# Mc/sec: 193.92
//
Query:       MMETSP0890-20130614|40225_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   13.3   0.0      0.092   12.6   0.0    1.4  1  PF10543.4 ORF6N domain
      0.082   12.5   1.5       0.52    9.9   0.0    2.0  2  PF11835.3 Domain of unknown function (DUF3355)
      0.094   12.3   2.3       0.15   11.6   0.9    1.8  2  PF10552.4 ORF6C domain
       0.15   11.3   5.6       0.24   10.6   3.9    1.3  1  PF05308.6 Mitochondrial fission regulator
       0.31    9.5   3.9       0.46    8.9   2.7    1.2  1  PF08317.6 Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> PF10543.4  ORF6N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.4e-05     0.092      37      66 ..      21      56 ..       7      83 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.4e-05
    PF10543.4 37 kerFpegkfyFkLtkeelkelrsqlvtlk......k 66
                  ++Fp+ +++F+++  ++++lr+q+++l       +
  MMETSP0890-20130614|40225_1 21 NDKFPKIEHRFDIDAHKIDTLREQTSYLLqtntesT 56
                 59**********************987654544440 PP

>> PF11835.3  Domain of unknown function (DUF3355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.058   1.6e+02     100     133 ..      46      80 ..       4      94 .. 0.61
   2 ?    9.9   0.0   0.00019      0.52      37      81 ..     100     146 ..      96     153 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.058
    PF11835.3 100 vavksantesvkialevske.adekdlvetnreel 133
                    +  +ntes++  ++++ + a  k   e+++++l
  MMETSP0890-20130614|40225_1  46 SYLLQTNTESTSKLSKINADlAALKANTELSNKML 80 
                  45677889999888888888766666666655544 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00019
    PF11835.3  37 saPsiaSaAavtpvslteTkeaeaDmdkveeksektlqdlcak..in 81 
                   +P + SaAa    +lt  ++ ea  +k + ks+k+  +l  +  +n
  MMETSP0890-20130614|40225_1 100 ETPIVVSAAASHISPLTTDEDIEASRGKKIGKSNKSKDELERErlLN 146
                  5899****99988888888888**************99998764444 PP

>> PF10552.4  ORF6C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.87   2.4e+03      13      37 ..      13      37 ..       6      42 .. 0.69
   2 ?   11.6   0.9   5.5e-05      0.15       1      47 [.      43      89 ..      43      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.87
    PF10552.4 13 lkekieeieekvedLkenlpLsage 37
                 +k+ +  +++k+ +++ ++ ++a +
  MMETSP0890-20130614|40225_1 13 TKNALCALNDKFPKIEHRFDIDAHK 37
                 6667777788888888887777765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 5.5e-05
    PF10552.4  1 ealilllealeelkekieeieekvedLkenlpLsageakeiqkkvkk 47
                 e++ +ll+ ++e ++k+++i+ ++  Lk n+ Ls++   ++ +  k+
  MMETSP0890-20130614|40225_1 43 EQTSYLLQTNTESTSKLSKINADLAALKANTELSNKMLTSLLSSQKQ 89
                 68899*****************************9988888776665 PP

>> PF05308.6  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.9   8.7e-05      0.24     134     233 ..      41     136 ..      35     142 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.7e-05
    PF05308.6 134 LRaQIAkIVaaqeqsnlstadllslsde..svslslkssstasvvisdpteepelevppppppPpPlpavslqqsasaielikerkekksaeektlvssksk 233
                  LR Q     + + +s ++ ++ ++++    + +++l++   +s ++s++++ +   ++ppppp  P+  ++  + +s++  +++ ++  s  +k+  s+ksk
  MMETSP0890-20130614|40225_1  41 LREQTSYLLQTNTESTSKLSK-INADLAalKANTELSNKMLTSLLSSQKQQLS---ADPPPPPETPIVVSAAASHISPLTTDEDIEA--SRGKKIGKSNKSK 136
                  666666666665555554443.3434330033344444467777766664443...4454444455555444555555554444444..4445555555555 PP

>> PF08317.6  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7   0.00017      0.46     167     241 ..      12      90 ..       2      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00017
    PF08317.6 167 llnkklelinsilpklrekkealkeelasLrqlkde...leecdseeleklreeLssleekieekrkkleel.eeelqe 241
                  l ++ l ++n+ +pk++++++   +++++Lr++++    ++  + ++l+k+  +L++l+ + e ++k+l  l  +++q+
  MMETSP0890-20130614|40225_1  12 LTKNALCALNDKFPKIEHRFDIDAHKIDTLREQTSYllqTNTESTSKLSKINADLAALKANTELSNKMLTSLlSSQKQQ 90 
                  4455667899999999999999999999999999987767777888999999999999999999999887661445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       840  (0.0614394); expected 273.4 (0.02)
Passed bias filter:                      578  (0.0422762); expected 273.4 (0.02)
Passed Vit filter:                        68  (0.00497367); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:00.87
# Mc/sec: 424.18
//
Query:       MMETSP0890-20130614|40222_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-23   80.9  10.8    6.1e-08   32.1   0.3    5.8  5  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.075   13.2   0.1         50    4.2   0.0    3.8  3  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.021   1.4e+02      12      29 ..     129     147 ..     125     151 .. 0.78
   2 !   15.6   0.0   1.4e-06    0.0098      12      39 .]     180     208 ..     177     208 .. 0.93
   3 !   13.8   0.0   5.3e-06     0.036       2      38 ..     215     255 ..     214     256 .. 0.90
   4 !   32.1   0.3   8.9e-12   6.1e-08       4      39 .]     319     355 ..     316     355 .. 0.94
   5 !   19.0   0.3   1.2e-07   0.00082      13      39 .]     373     400 ..     371     400 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.021
                  SSEEEEEEESS.STEEEEE CS
   PF00400.27  12 spVtcvafspd.gpllasg 29 
                  ++Vt+++++ +   +la g
  MMETSP0890-20130614|40222_1 129 FTVTSMSWNESnNDILAVG 147
                  69*******9965555555 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.4e-06
                  SSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  12 spVtcvafspd.gpllasgSrDgtirlWd 39 
                  +++t++ fs   ++lla g rDg++r++d
  MMETSP0890-20130614|40222_1 180 HGCTALHFSKRsPHLLAVGTRDGSVRIFD 208
                  789999999999***************98 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 5.3e-06
                  EEEEEEESSSSSEEEEEEESS....STEEEEEETTSEEEEE CS
   PF00400.27   2 eckatlrgHtspVtcvafspd....gpllasgSrDgtirlW 38 
                  e++ + + Ht+p++ v + +     g +l+s S Dg +  W
  MMETSP0890-20130614|40222_1 215 EPLLESKKHTDPIWQVQWIDKgserGEILVSISTDGRVLEW 255
                  56777889****************************99777 PP

  == domain 4    score: 32.1 bits;  conditional E-value: 8.9e-12
                  EEEEESSSSSEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27   4 katlrgHtspVtcvafspd.gpllasgSrDgtirlWd 39 
                  + t++gH +p+  +++sp  +p+++s+S+D t++lW+
  MMETSP0890-20130614|40222_1 319 LDTYTGHAGPIFKIKCSPFwSPVFLSCSADWTVKLWH 355
                  6799********************************6 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 1.2e-07
                  SEEEEEEESS.STEEEEEETTSEEEEEE CS
   PF00400.27  13 pVtcvafspd.gpllasgSrDgtirlWd 39 
                   V+++a+sp  ++++as  +Dg i +Wd
  MMETSP0890-20130614|40222_1 373 VVNDIAWSPFiSTIFASVAHDGRIEIWD 400
                  59*************************9 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0073        50      23      39 ..     194     210 ..     191     211 .. 0.89
   2 ?   -1.3   0.0      0.38   2.6e+03      19      31 ..     292     305 ..     280     308 .. 0.80
   3 ?    3.7   0.0      0.01        69      18      38 ..     469     489 ..     452     491 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0073
    PF13570.1  23 lvyvgtgdGrlyAlDae 39 
                  l+ vgt dG+++ +Da+
  MMETSP0890-20130614|40222_1 194 LLAVGTRDGSVRIFDAR 210
                  5779***********96 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.38
    PF13570.1  19 vdgglvyvgtg.dG 31 
                  +d+  +y++++ dG
  MMETSP0890-20130614|40222_1 292 IDDPAIYIAGTeDG 305
                  68888999988565 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.01
    PF13570.1  18 avdgglvyvgtgdGrlyAlDa 38 
                  a+   +++vg+  G+++++ +
  MMETSP0890-20130614|40222_1 469 ATTAPVLVVGDAQGSVTCYRI 489
                  666789************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      278  (0.0203335); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.36s 00:00:01.17 Elapsed: 00:00:01.04
# Mc/sec: 1212.00
//
Query:       MMETSP0890-20130614|40230_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.37s 00:00:00.88 Elapsed: 00:00:00.73
# Mc/sec: 856.78
//
Query:       MMETSP0890-20130614|40244_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.7   0.0        0.2   10.2   0.0    1.2  1  PF14398.1 YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> PF14398.1  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.5e-05       0.2     184     232 ..      35      83 ..      12     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.5e-05
    PF14398.1 184 eklekkLeeaalkiaelldkalearlgELGlDlglDkegriWllEvNsk 232
                   +++ ++e+  lk  ++ +++ + r++ L+ D+++D +g++ + EvN+ 
  MMETSP0890-20130614|40244_1  35 AEISDRVESEELKAYSGENHHPHHRFTLLSPDVAIDRNGNPFIEEVNMN 83 
                  5677788888888888888888888**********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       376  (0.0275015); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.40s 00:00:00.95 Elapsed: 00:00:00.88
# Mc/sec: 691.68
//
Query:       MMETSP0890-20130614|40246_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-13   47.8   0.1      2e-12   46.7   0.1    1.6  1  PF00787.19 PX domain
  ------ inclusion threshold ------
      0.049   13.6   0.1       0.12   12.4   0.0    1.6  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)


Domain annotation for each model (and alignments):
>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1   2.9e-16     2e-12      15      99 ..     137     228 ..     120     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2.9e-16
                  .CETSSEEEEEEEECS-.......SCEEEEEEEHHHHHHHHHHHHHHTT.TSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSCH CS
   PF00787.19  15 gskkhsyylievelktg.......akewtvkRrYsdFeeLhskLlrkfp.rlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpe 99 
                   skk + y + ++l+++         +w+v+RrYsdFe+L   L++     ++  plP+k++f+  +k  +ef+e+rr++L+++ q++++   
  MMETSP0890-20130614|40246_1 137 ESKKFAEYEVACSLRQDvllekqqVLKWSVWRRYSDFERLEATLRNSLGwHMTDKPLPSKHTFVL-DKLAPEFLEQRRSELDAWWQQIISIDR 228
                  46777788888888888999999999********************9999**************8.**********************98764 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05      0.12       8      67 ..      24      86 ..      17      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.7e-05
                 TTSH---EEEESSTTSSSSEEEE...ESTTT.HHTTTTS.BSTTCEEEEETTEBGTTSHHHHHHH CS
   PF00595.19  8 krgglGfslkggsdkrdkgifvs...evvpg.gaaeagg.lkeGDkIlsvNgvdvenvshdeavq 67
                  +g++G+ l +g+d +   +++    +v+   g  e+ g ++ GD +++vN  +++++   ++ +
  MMETSP0890-20130614|40246_1 24 PQGPVGIVLEEGRDGK--AAVIRsweRVEGRaGLVEKHGgIRLGDYLVGVNEIPTAELDFRQILE 86
                 699***********96..66664121455559999*****************9988776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.37s 00:00:01.03 Elapsed: 00:00:00.79
# Mc/sec: 1137.51
//
Query:       MMETSP0890-20130614|40247_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-49  166.3  12.6    6.9e-29  100.6   1.5    2.3  2  PF04142.10 Nucleotide-sugar transporter
    2.6e-06   26.4  11.2    1.5e-05   23.9   7.8    2.0  1  PF08449.6  UAA transporter family
    1.1e-05   25.3  23.8    8.7e-05   22.4   3.8    2.9  3  PF00892.15 EamA-like transporter family
     0.0012   18.4  26.3      0.034   13.6   6.8    2.8  2  PF03151.11 Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> PF04142.10  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   1.5     2e-32   6.9e-29      11     135 ..      67     206 ..      58     211 .. 0.92
   2 !   70.8   2.1   2.4e-23   8.1e-20     142     238 .]     241     337 ..     233     337 .. 0.97

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 2e-32
   PF04142.10  11 lkepsdtlKlavPaliYtlqNnllyvalsnldaatyqvtyqlkilttAlfsvllLkrkLstlqWasllllvlgvvlvqlkqkes.eaekkrea..............eenivlGlvavlvacllsgfAgvYfEKiLKesn 135
                    e++ tl l+vPa+iY  q  l yval nl+aa++ v +q k++ttA+++v l++++L + q +sl+llv+g vl ql++ +s + ++++++              + n+v+G++a l   ++sgfA vY EK++K  +
  MMETSP0890-20130614|40247_1  67 RIEWRKTLLLMVPAAIYNFQKTLEYVALRNLNAAVFAVLVQTKLFTTAICAVGLMGKSLRRAQIISLVLLVVGCVLAQLDHGDSsDCSTATQIekensqipstttdaAGNKVVGVIATLCIAFSSGFASVYTEKVIKAVD 206
                  568999**************************************************************************999955556666599***********99*****************************765 PP

  == domain 2    score: 70.8 bits;  conditional E-value: 2.4e-23
   PF04142.10 142 NiqlallgilfalltlllkdgekikekgffkGydavvwlvvllqavgGlvvavvvkyaDNilkafatslaivlstvasvllfdfrisllfllgallV 238
                   iqla+ ++l+ ++ + l+d+ +i+++g+++G+ +  wl v ++a+gG+ va v+k+aD ilk++at++++vl+ +as +lf+  +++++ lg + V
  MMETSP0890-20130614|40247_1 241 QIQLAVASLLIEGVWAALTDFGSIQKHGLWYGFGWEAWLAVSMTALGGIAVAAVLKFADAILKGYATAISVVLTGLASHVLFGTVLNVEYGLGMINV 337
                  69****************************************************************************************9998766 PP

>> PF08449.6  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   7.8   4.3e-09   1.5e-05      68     298 ..      77     347 ..      43     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.3e-09
    PF08449.6  68 vlivalfflssvlnneaLkyisyPtqvifkSgklipvmilgvlilgkrYsllqylsvllitlGviiftlasaksskskketteekkv................Gilllvlallldallgavqeklykkygkss........................kemlfyshllslpfflllllsiktgelasavsfll...khpsvlfylllnsltqyvgikfvflliaefgaltvtlvttlRKfvslllSvllFgnpltlqqwlGvllVflgillkall 298
                  ++ +a++   ++l++ aL+ ++  +  ++  +kl ++ i  v ++gk+ +  q++s +l+++G++++ l   +ss+ ++ t+ ek+                 G++  +   + +++ + ++ek++k+  + s                        ++ l y+++   +  ll+  +  +  l ++ s++    ++   +   l+ s+t  +g   v ++++  +a+     t +  +++ l S +lFg +l +++ lG++ V+++++l+   
  MMETSP0890-20130614|40247_1  77 MVPAAIYNFQKTLEYVALRNLNAAVFAVLVQTKLFTTAICAVGLMGKSLRRAQIISLVLLVVGCVLAQLDHGDSSDCSTATQIEKENsqipstttdaagnkvvGVIATLCIAFSSGFASVYTEKVIKAVDAVSsnasssntgsndsasnntqskpkvESGLAYTQIQLAVASLLIEGV--WAALTDFGSIQKhglWYGFGWEAWLAVSMTA-LGGIAVAAVLKFADAILKGYATAISVVLTGLASHVLFGTVLNVEYGLGMINVIAAMVLYNST 347
                  44567778889999********999999999***************************************99999999998777666799**************999999999*************5555544444444455444444444444444666666666555555555555..4444444444445435555555555555555.55557999999999999999999999*******************************99765 PP

>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   3.8   2.6e-08   8.7e-05      30     124 ..      47     143 ..      19     145 .. 0.74
   2 ?   -1.2   0.0       0.5   1.7e+03       1      24 [.     189     212 ..     180     219 .. 0.73
   3 !   11.0   4.7   8.4e-05      0.29      46     124 ..     266     344 ..     229     346 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.6e-08
   PF00892.15  30 agillilllfllrep.ialislkdilallllgllgtvlgy...llffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  ++ l++ll+     + i+++ + ++   lll + + ++++    l + al++++a++ ++++ +    t++++v l g++l+  q++++vl ++G++l 
  MMETSP0890-20130614|40247_1  47 SA-LWVLLIDRGTISsIFRYLRIEWRKTLLLMVPA-AIYNfqkTLEYVALRNLNAAVFAVLVQTKLFTTAICAVGLMGKSLRRAQIISLVLLVVGCVLA 143
                  44.33333333333364455555555555555553.333311169999************************************************985 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.5
   PF00892.15   1 lswaiyfvlskkllesvspltita 24 
                  +s ++++v++ k+++ v++++ +a
  MMETSP0890-20130614|40247_1 189 FSSGFASVYTEKVIKAVDAVSSNA 212
                  567777777777777777777666 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 8.4e-05
   PF00892.15  46 alislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  +   +  + + + l++  t+lg ++ +  lk+ +a   +  t++++v+t l+s++l+g  l++   lg++ ++++++l 
  MMETSP0890-20130614|40247_1 266 KHGLWYGFGWEAWLAVSMTALGGIAVAAVLKFADAILKGYATAISVVLTGLASHVLFGTVLNVEYGLGMINVIAAMVLY 344
                  5566778888999*************************************************************99986 PP

>> PF03151.11  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   6.8     1e-05     0.034       6     150 ..       3     142 ..       1     142 [. 0.89
   2 !    9.5   5.8   0.00018      0.63       1     152 [.     180     345 ..     180     346 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1e-05
   PF03151.11   6 laasllfalrlvltqlllrkklkkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaflllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvl 150
                  l+  l+ al++++ ++++r + +++ +      +i +  + ++ + +++ll++       +ssi++  l   +r +lll++++ ++ ++  ++++ l +  + ++ v+   k + + + +v ++g+ +   +i++l++ ++G vl
  MMETSP0890-20130614|40247_1   3 LMVLLFLALQNCVKNIVMRAAVRGKANFLYSAAVIATEGLKCVASALWVLLIDRGT----ISSIFR-YLRIEWRKTLLLMVPAAIYNFQKTLEYVALRNLNAAVFAVLVQTKLFTTAICAVGLMGKSLRRAQIISLVLLVVGCVL 142
                  55567789************9999999999999999999999***********999....444444.33445699*******************************************************************875 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00018
   PF03151.11   1 Gfilalaasllfalrlvltqlllrkkl.......................kkeskldplelliylspvafivllvvlllvegpklgkesssiksldlssivryvlllllngvlafllnisaf.lllervSsltlsvagivkrvlvivlsviifgdkitflnilGlliallGvvlYs 152
                  G+i++l  ++++++ +v+t+++ + +                        k +  +    ++i+l+++++++  v++ l+++ ++ k++          + +++ + ++ +v++ +l  +a+  +l+ + ++    a ++  vl+ ++s ++fg+ +++  +lG++  ++ +vlY+
  MMETSP0890-20130614|40247_1 180 GVIATLCIAFSSGFASVYTEKVIKAVDavssnasssntgsndsasnntqsKPKVESGLAYTQIQLAVASLLIEGVWAALTDFGSIQKHGL---------W-YGFGWEAWLAVSMTALGGIAVaAVLKFADAILKGYATAISVVLTGLASHVLFGTVLNVEYGLGMINVIAAMVLYN 345
                  7888888899999**********99999*****************988755555566667888888999999999999999999777776.........3.6666777777776666555551566667789999999*************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       697  (0.0509801); expected 273.4 (0.02)
Passed bias filter:                      276  (0.0201872); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.40s 00:00:01.12 Elapsed: 00:00:00.83
# Mc/sec: 1022.06
//
Query:       MMETSP0890-20130614|40255_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   14.0   0.0       0.81    9.7   0.0    2.4  2  PF10290.4 Glycine-rich protein domain (DUF2403)
       0.15   12.1   0.3       0.35   10.9   0.2    1.6  1  PF09697.5 Protein of unknown function (Porph_ging)


Domain annotation for each model (and alignments):
>> PF10290.4  Glycine-rich protein domain (DUF2403)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.046   3.1e+02       5      28 ..     239     265 ..     236     277 .. 0.77
   2 ?    9.7   0.0   0.00012      0.81      40      58 ..     329     347 ..     321     351 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.046
    PF10290.4   5 eyenvgfsGsYneVtkldeet...csC 28 
                  ey +vg  ++Y + ++l+  t     C
  MMETSP0890-20130614|40255_1 239 EYAHVGLRAQYLRLKSLQRYTetyNLC 265
                  799*************98776555444 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00012
    PF10290.4  40 aPlneelsvhFRGPleLkq 58 
                   P++e l v+FRGP  + +
  MMETSP0890-20130614|40255_1 329 KPYAESLGVIFRGPFDVTK 347
                  69************98765 PP

>> PF09697.5  Protein of unknown function (Porph_ging)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   5.2e-05      0.35      21      52 ..      90     121 ..      59     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.2e-05
    PF09697.5  21 vkeveetdfkeeeeeieekkerevtAWYtpei 52 
                  + ++ +++++++e+e++++k ++++ WYt+e+
  MMETSP0890-20130614|40255_1  90 KNTSAKNRMTSTEHEEQVNKRQKIVDWYTEEV 121
                  333344556899999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       492  (0.035986); expected 273.4 (0.02)
Passed bias filter:                      358  (0.0261849); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.78
# Mc/sec: 1443.96
//
Query:       MMETSP0890-20130614|40251_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   27.5   0.0    2.7e-06   26.3   0.0    1.6  1  PF00931.17 NB-ARC domain
    5.6e-06   25.5   1.6    7.5e-05   21.8   0.1    2.5  2  PF12770.2  CHAT domain
     0.0013   19.0   2.2     0.0021   18.3   0.1    2.3  2  PF13191.1  AAA ATPase domain
     0.0026   17.7   0.2      0.017   15.0   0.0    2.2  2  PF13401.1  AAA domain
     0.0037   16.5   0.0      0.013   14.7   0.0    1.9  1  PF13481.1  AAA domain
      0.004   16.6   0.4      0.031   13.7   0.3    2.4  1  PF05729.7  NACHT domain
  ------ inclusion threshold ------
      0.023   14.2   0.1      0.091   12.4   0.1    2.1  1  PF13245.1  Part of AAA domain
       0.15   12.2   0.0        0.3   11.2   0.0    1.4  1  PF00752.12 XPG N-terminal domain


Domain annotation for each model (and alignments):
>> PF00931.17  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.6e-09   2.7e-06      21     206 ..     192     424 ..     182     442 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.6e-09
                  EEEEE-------HHHHHHHTS-SS-----SEEEEEE-----SS.HHHHHHHHHHHXXXXXXX...................-TTSS-HH.HHHHHHHHTTT-SEEEEEEE....E--HH.........HH........HHHTT-EEEEE.ES-GGGGGG--S-EEEEE-----HHHHHHHHHH-..........---TT............H..HHHHHHHHHT---HHHH.....HH CS
   PF00931.17  21 vvglvGmgGvGKttlakqvykdesveshFdvvawvkvsktake.fdlqkdilkeLgkededv...................sveknese.lkrklkelLkrkrfLlvLDD....Vweee.........ewdkikvvfpdkelgskvllT.tRseevanavseksekievelLekeesweLlekk..........vfeke....lkedsel.e..evakeivekckGlPLalkvlggll 206
                  + ++ G  G GK+ l++++   ++ +++Fd ++wv    +     d++++  + L   +  v                   ++   +++  +++  ++L++k +L++LDD    V e           e +k  +++ +++ + kv+lT  R   +  + s ++ +i++e L  + s  Ll +           v   +    +++++++    +  + i+++ +G+PLa+++ + ll
  MMETSP0890-20130614|40251_1 192 LTTVAGAFGFGKSALVAAACAYHAERGNFDAIVWVRLQSSIALvDDVLEATRTVLLAPS--VknnaqpeawrritsfsllhHAAAGTNKiTEHHAANFLREKSVLIILDDferlVLEATpkvatsvrnECQKAMASLLAFSKKTKVVLTcARGSGLGRSTSVTERVIKLEPLDAKSSARLLLQRspelarratnV---KavrgPRVPPNVlIsiTARHAIISRLAGNPLAIALSATLL 424
                  56789999***************************987776655555555444443332..1335678999*******999777777776888999**************55553333355566557778888999999*********9559999******************9999998877768887665432...2445655555531211445789999*******96666655 PP

>> PF12770.2  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.4e-08   7.5e-05     141     258 ..       9     118 ..       1     121 [. 0.73
   2 ?    2.4   0.1     0.037        63      92     160 ..     216     289 ..     153     377 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.4e-08
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PF12770.2 141 sryrivHfatHgvfkanpplrsglllsaende..edglLtaeeilelnldg....aelVvLsACqtalgevsdgegvlgLaralllaGvrsvvaslw.......pVsdeatalLmkrfYqnllaglskaeA 258
                    +r++Hfa+Hg  +       +l +++++++  +++   ++++ +    g    ++lVv ++C++              ++ +++aGv +vva          +V d+a+a + ++fY ++ ag+s+++A
  MMETSP0890-20130614|40251_1   9 LGARVIHFAGHGHPE-------FLCFEDKKGTavPASNEALRKLVSA---GgrggVRLVVVNSCHSR-----------RAGESFVAAGVSHVVAVGTeadsednRVTDRAAASFCRAFYLGIIAGKSVQQA 118
                  579*********999.......7777665553442222233333332...23447************...........66899**********986522222227999*******************9998 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.037
                  x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx RF
    PF12770.2  92 a..llsklvfpplpgteaEaeaiaellgegeakvllgeeateealksalslsryrivHfatHgvfk......anppl 160
                  +   ++ +v+ +l ++ a ++ + e  ++  + + ++++a+ ea+++    ++++++H a+ g+ k      an++ 
  MMETSP0890-20130614|40251_1 216 ErgNFDAIVWVRLQSSIALVDDVLEATRTVLLAPSVKNNAQPEAWRRI---TSFSLLHHAAAGTNKitehhaANFLR 289
                  145678888888888888888888888888889999**********99...8***********99977777644333 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.2e-06    0.0021      16     141 ..     184     301 ..     172     329 .. 0.66
   2 ?   -0.4   0.2       0.7   1.2e+03      70     104 ..     360     406 ..     313     507 .. 0.58

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.2e-06
    PF13191.1  16 lrrvsegsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrnlpysaiiqa....lrellrqlltelaaelggwreallaalgalipelegiiglqalvalldaalartr...........rpk.lvlvlDDlq 141
                  +++  +++ l  v G+ G GKS+L+ + ++   +er+ f+a ++++l+ ++   a++++     r++l + + +  a+ ++wr+  + +l                      a+a t+           r k ++++lDD  
  MMETSP0890-20130614|40251_1 184 VDSMLRHR-LTTVAGAFGFGKSALVAAACAY-HAERGNFDAIVWVRLQSSI---ALVDDvleaTRTVLLAPSVKNNAQPEAWRRITSFSLLH-------------------HAAAGTNkitehhaanflREKsVLIILDDFE 301
                  44444455.78899***********996666.5689999999999999995...11122322366666666666666666666665555555...................4444444455544566674447******943 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.7
    PF13191.1  70 aiiqalrellrqlltelaaelggwreallaalga..............l 104
                  +++  +++ +r ll+++ + +++++ +++   +                
  MMETSP0890-20130614|40251_1 360 PLD--AKSSARLLLQRSPELARRATNVKAVRGPRvppnvlisitarhaI 406
                  333..44555555555544444444444444444333333333333331 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05     0.017       4     122 ..     190     338 ..     186     342 .. 0.60
   2 ?   -0.6   0.0      0.68   1.2e+03      19      86 ..     422     488 ..     421     516 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1e-05
    PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae.....................karvvfveapast.spkellqkllsalglpakgrltteell.ealqealrrrrtrlliiDEaqrL.........s...eealeelrsllddetgvklvlv 122
                  +++++v G  G GK+ l+      + e+    +                      +r+v+  ++ +   + e ++++ s   l + + + t++++  + ++ lr++++ l+i+D+++rL         +    e+ +   sll +++++k+vl+
  MMETSP0890-20130614|40251_1 190 HRLTTVAGAFGFGKSALVAAACAYHAERG---NfdaivwvrlqssialvddvleATRTVLLAPSVKNnAQPEAWRRITSFSLLHHAA-AGTNKITeHHAANFLREKSV-LIILDDFERLvleatpkvaTsvrNECQKAMASLLAFSKKTKVVLT 338
                  5788999***********99999764443...2333666666655555555555333333333333323334455554444444444.77888886888888888888.*********988775544303443333333333333667777765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.68
    PF13401.1  19 tllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakgrltteellealqealrrr 86 
                  tll+ l++q d+++ ++++ r++ + +++++s  ++  + ls ++++ ++  t e+ +++l + l ++
  MMETSP0890-20130614|40251_1 422 TLLNALFDQEDQNQDQTKNDRFLQFLLKSQKSVPAFSDDQLSTVQVQRSK-STPEDATNHLDDFLLTE 488
                  67889999999988888899999999999999999999999999998888.77777778887777665 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.8e-06     0.013      25     181 ..     183     335 ..     164     340 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.8e-06
    PF13481.1  25 lvkgllprgsltllaGapgtGKStlalqlaaavatGepflgpvvpepgrVlylsaEdseaelrrrlsailaal.........ddpenlllvslagvgslrltad.drrdalltadlerllaaieelegpdlvviDtlsrlvgg.densnsdv....gaviaalerlakrtga 181
                  lv+ +l r+ lt++aGa g GKS l+++ +a  a+ ++f         +++++ +  s a + + l+a+++ l           +++ +++s      + l +   ++ +++t+  ++ +++++e  +  l+++D + rlv    ++ +++v    ++++a l ++ k+t++
  MMETSP0890-20130614|40251_1 183 LVDSML-RHRLTTVAGAFGFGKSALVAAACAYHAERGNF--------DAIVWVRLQSSIALVDDVLEATRTVLlapsvknnaQPEAWRRITS------FSLLHHaAAGTNKITE--HHAANFLRE--KSVLIILDDFERLVLEaTPKVATSVrnecQKAMASLLAFSKKTKV 335
                  788887.79*****************9999999977766........367777777776666666666665555544422222334444433......3444330334444554..455666665..699999999999875545544544331246666666666666665 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   1.8e-05     0.031       3     161 ..     193     371 ..     191     376 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-05
    PF05729.7   3 vilqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrskna.rsladlLfsqlpepaapvse......................vwivllelperlLlilDglDelvsdlgq...lkekqpvrtlLselirkkllpeasllltvrpdalrdleeqleea.ivlevegfseerrkqlvr 161
                    + G+ G GK++L++  +   a++  +      v +  ++++    ++    +++L ++  + +a+++                         +    +++++L+ilD++++lv    +    + +++ ++ +++l+     ++++++lt+  ++   l+++ + + +v+++e++ +++ ++l+ 
  MMETSP0890-20130614|40251_1 193 TTVAGAFGFGKSALVAAACAYHAERGNFD---AIVWVRLQSSIALVDDVlEATRTVLLAPSVKNNAQPEAwrritsfsllhhaaagtnkiteHHAANFLREKSVLIILDDFERLVLEATPkvaTSVRNECQKAMASLLAF--SKKTKVVLTCARGSG--LGRSTSVTeRVIKLEPLDAKSSARLLL 371
                  56777777777777777766666666555...3555555566666555555555666666555555555566677777777777776666665566667899999*********987777889889999*********99..999******988888..655554444899999999999888875 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.3e-05     0.091       4      49 ..     185     249 ..     183     279 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.3e-05
    PF13245.1   4 eaalagnpllvvtGgPGtGKTttlaaiiaall........................aarekpgrsvllva 49 
                  ++ l+ ++l+ v G  G GK++++aa+ a+++                        +a     r vll++
  MMETSP0890-20130614|40251_1 185 DSMLR-HRLTTVAGAFGFGKSALVAAACAYHAergnfdaivwvrlqssialvddvlEA----TRTVLLAP 249
                  55677.9*****************9999999977766666666666666665544433....44555554 PP

>> PF00752.12  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017       0.3      13      65 ..     401     451 ..     395     458 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00017
                  H-GEEEEEGGGG---EEEEEHHHHHHHHHHHSB.----B-BS-TTT---HHHH CS
   PF00752.12  13 vaairsvsiealegkklaiDaslwlyrfliavreqlgnalentshlmglfsrl 65 
                  +a  r+  i +l g+ lai  s+ l  +l+   +q++++ +n+ +l++l++  
  MMETSP0890-20130614|40251_1 401 TA--RHAIISRLAGNPLAIALSATLLNALFDQEDQNQDQTKNDRFLQFLLKSQ 451
                  44..888999*************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       416  (0.0304272); expected 273.4 (0.02)
Passed bias filter:                      306  (0.0223815); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.14u 0.42s 00:00:01.55 Elapsed: 00:00:01.46
# Mc/sec: 1235.93
//
Query:       MMETSP0890-20130614|40261_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   72.7   0.6    3.3e-20   72.1   0.4    1.3  1  PF13365.1  Trypsin-like peptidase domain
    3.1e-15   56.2   0.1      1e-14   54.5   0.1    1.8  2  PF00089.21 Trypsin
      7e-12   44.9   0.1    3.9e-11   42.5   0.0    2.2  3  PF13180.1  PDZ domain
    1.6e-10   40.9   0.1    6.7e-10   38.8   0.0    2.1  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    0.00012   20.5   2.0      0.022   13.0   0.1    2.4  3  PF10459.4  Peptidase S46
     0.0021   16.9   0.0      0.006   15.4   0.0    1.6  1  PF00863.14 Peptidase family C4
  ------ inclusion threshold ------
      0.011   15.0   0.2      0.085   12.1   0.1    2.2  2  PF04085.9  rod shape-determining protein MreC


Domain annotation for each model (and alignments):
>> PF13365.1  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.4   1.7e-23   3.3e-20       1     120 []      17     156 ..      17     156 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.7e-23
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x.xxxxxxxxxxxxxxxxxxxxxxxx RF
    PF13365.1   1 gtGfvvnkdglilTnaHvveparkgkghrasevrvvsldgrkedhkakvvkvsaeqlDlAllqve................................sedivgkggvkagsksssskqstkgnrvli....i.tdaathpGsSGgPvldsdGrvvGl 120
                  g+Gf+v +dgli+Tn+Hvv+        r +++ v+  dgrk +  a+ v+ +++ +D+A++++e                                s++ + + + ++ ++ s     +      +    +  d+a++ G+SGgP++d dG +vG+
  MMETSP0890-20130614|40261_1  17 GSGFIVRDDGLIVTNHHVVS--------RGNNMFVTLNDGRKFP--ARYVAGDPG-SDVAIIRIEkakknlpvgkigsssslkagdfvvalgsplnlSNSVTFGIVSNVARHGSEIGLMQ------QrgefLqVDCAINQGNSGGPLVDLDGYIVGI 156
                  9*******************........99**************..*********.**********************999999888888877655422223333333333333333333......14444358**********************8 PP

>> PF00089.21  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   5.3e-18     1e-14      26     215 ..      16     175 ..       3     180 .. 0.74
   2 ?   -2.2   0.0       1.1   2.2e+03      63      89 ..     210     237 ..     198     240 .. 0.72

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 5.3e-18
                  EE-EEEEETT.EEEEEGGGGTSGGGEEEEEECBBTTSCTTTTEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS--BSTB-EEBBSSTTHHTTTTSEEEECCHHBSSSTSBESBCBCEEEEEBEHHHHHHT.TTTTSTTTEEEEESTSSSB---------EEEEETEB---BEEETTCCBTTB-EEEEEGGG CS
   PF00089.21  26 lCgGslisen.wvLTAaHcvknasdvkvvlgehnlkksegkeqklkvekvilhpnynpstldnDiallklkepvklgdtvrpiclpaassslkvgttclvsGwgrtkekgksdtlqevevpvvsretcksa.yggkvtenmlcagakggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgvytkvss 215
                  + +G++++++  ++T++H+v+  +++ v       + ++g  +k++ + v      +p     D+a++++++  k +  v  i   +   slk+g  ++v++ g++ + +  ++++ + v++v r   +   ++   + ++l+++     +++qG+SGGPlv  dg++vGi+s++ + a+g  +++++++++
  MMETSP0890-20130614|40261_1  16 AGSGFIVRDDgLIVTNHHVVSRGNNMFV-------TLNDG--RKFPARYVAG----DPG---SDVAIIRIEKA-KKNLPVGKIGSSS---SLKAG--DFVVALGSPLNLS--NSVTFGIVSNVARHGSEIGlMQ--QRGEFLQVDC----AINQGNSGGPLVDLDGYIVGINSMKAQAADG--ISFAIPIDT 175
                  456999999999*********9555544.......56667..5777777433....554...5********98.8999998888888...56777..6666666655555..5566666666666433332333..4699******....************************9888888..899999874 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.1
                  TTTTEEEEEEEEEEETTEBTTT.TTTTE CS
   PF00089.21  63 egkeqklkvekvilhpnynpst.ldnDi 89 
                   +++qk+ ++++++h+  ++   +  Di
  MMETSP0890-20130614|40261_1 210 PPGQQKVLIAQIVPHSPADKAGiKPGDI 237
                  45689999***99999888777456666 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   3.5e+03      47      67 ..      46      66 ..      24      79 .. 0.71
   2 ?   -2.0   0.0       1.5     3e+03      31      41 ..      86      96 ..      75      98 .. 0.81
   3 !   42.5   0.0     2e-14   3.9e-11      12      75 ..     203     274 ..     192     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.8
    PF13180.1 47 ksltdlkslllkkkpGdtvkl 67
                 ++++++  ++  ++pG+ v +
  MMETSP0890-20130614|40261_1 46 NDGRKFPARYVAGDPGSDVAI 66
                 556666667777888887764 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.5
    PF13180.1 31 glkpGDiilkv 41
                  lk+GD ++++
  MMETSP0890-20130614|40261_1 86 SLKAGDFVVAL 96
                 59999999987 PP

  == domain 3    score: 42.5 bits;  conditional E-value: 2e-14
    PF13180.1  12 n.........trgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslllkkkpGdtvkltvlRdgkk 75 
                  +         +++vl++++ + sPa+kag+kpGDiil++dgk+v+ ++d   ++ + +  +++++t+lR +++
  MMETSP0890-20130614|40261_1 203 DthgtygppgQQKVLIAQIVPHSPADKAGIKPGDIILEFDGKPVSGVPDILAAI-GLEGQQQISVTILRSNDD 274
                  4455566666789*****************************************.8888899******98765 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   5.7e+03      42      52 ..      86      96 ..      79     104 .. 0.77
   2 !   38.8   0.0   3.5e-13   6.7e-10       9      80 ..     191     268 ..     182     269 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.9
                 SBSTTCEEEEE CS
   PF00595.19 42 glkeGDkIlsv 52
                 +lk+GD ++++
  MMETSP0890-20130614|40261_1 86 SLKAGDFVVAL 96
                 39999988876 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 3.5e-13
                  TSH---EEEESSTTS.......SSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEEEE CS
   PF00595.19   9 rgglGfslkggsdkr.......dkgifvsevvpggaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLti 80 
                  r ++Gf+ +   d +       ++ + ++++vp ++a+++g+k+GD+Il+ +g++v++v++  a++ ++g   ++++ti
  MMETSP0890-20130614|40261_1 191 RPFIGFKMVALVDTHgtygppgQQKVLIAQIVPHSPADKAGIKPGDIILEFDGKPVSGVPDILAAIGLEGQQ-QISVTI 268
                  56899999999999999999**************9999999*************************999996.777766 PP

>> PF10459.4  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   1.1e-05     0.022      47      68 ..      15      36 ..       6      39 .. 0.89
   2 ?   -2.8   0.0      0.68   1.3e+03     235     250 ..      84      99 ..      82     107 .. 0.87
   3 !    6.4   0.1    0.0012       2.3     630     650 ..     137     157 ..     128     163 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
    PF10459.4 47 ggCsasfVSpeGLvlTNhhcay 68
                 + +s+ +V ++GL++TNhh++ 
  MMETSP0890-20130614|40261_1 15 SAGSGFIVRDDGLIVTNHHVVS 36
                 56899**************986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.68
    PF10459.4 235 akgvkegdfvmvaGyP 250
                   + +k+gdfv+++G P
  MMETSP0890-20130614|40261_1  84 SSSLKAGDFVVALGSP 99 
                  6789**********99 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0012
    PF10459.4 630 itGGNsGSPvlnakgeLvGla 650
                  i  GNsG P+++ +g +vG++
  MMETSP0890-20130614|40261_1 137 INQGNSGGPLVDLDGYIVGIN 157
                  667****************97 PP

>> PF00863.14  Peptidase family C4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.1e-06     0.006      42     177 ..      27     165 ..      11     181 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.1e-06
   PF00863.14  42 liitpaHlfkrnnge.ltiksqhgeftvknltqlkvkkiegrDlvvirl..Pkdfppfkqklkfrapkeeekvclvgtnfq..ekslsstvSessvilp.......eensgfwkHwisTkeGdCGlplvsvkdgkivGiHslanstnk 177
                  li+t++H++ r n+  +t+++ + +f      +  v   +g D+ +ir    k+  p+ +  + + +k ++ v+ +g+  +  ++ +   vS+ +   +       +++++f +  +  ++G+ G plv+  dg ivGi+s++++  +
  MMETSP0890-20130614|40261_1  27 LIVTNHHVVSRGNNMfVTLNDGR-KFP-----ARYVAGDPGSDVAIIRIekAKKNLPVGKIGSSSSLKAGDFVVALGSPLNlsNSVTFGIVSNVAR--HgseiglmQQRGEFLQVDCAINQGNSGGPLVDL-DGYIVGINSMKAQAAD 165
                  78888888888877755655555.444.....4466777788887777511556668888888899999999988886443102222223333221..112233448999*******************97.8*********998765 PP

>> PF04085.9  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.4e-05     0.085      57     127 ..      48     120 ..      18     127 .. 0.77
   2 ?    5.2   0.0    0.0058        11      32      69 ..     103     168 ..      99     242 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.4e-05
    PF04085.9  57 eikvsvkiergd..lr.giisgygdkkselelsyleeskdikkGDvlvTsGlggvfpagllvgeVskvkadseg 127
                  ++k++++   gd     +ii   +++k++l + ++ +s+++k GD +v  G   +  + ++ g Vs+v ++ ++
  MMETSP0890-20130614|40261_1  48 GRKFPARYVAGDpgSDvAII-RIEKAKKNLPVGKIGSSSSLKAGDFVVALGSPLNLSNSVTFGIVSNVARHGSE 120
                  44566666666644233666.55555669**************************************9998765 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0058
    PF04085.9  32 sekgLvGkVdeVgentsrvllltdvei..kvsvkiergd..........................l 69 
                  s+++  G V++V+++ s++ l+++ +   +v   i++g+                           
  MMETSP0890-20130614|40261_1 103 SNSVTFGIVSNVARHGSEIGLMQQRGEflQVDCAINQGNsggplvdldgyivginsmkaqaadgiS 168
                  677889******************999555555666666777777755555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.70
# Mc/sec: 1027.01
//
Query:       MMETSP0890-20130614|40270_1  [L=1244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-46  152.5  94.6    0.00028   20.3   0.2   21.2 24  PF02493.15 MORN repeat
    1.7e-07   29.9   0.0    1.4e-06   26.9   0.0    2.3  1  PF09794.4  Transport protein Avl9
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.047   13.3   0.0    2.0  1  PF07792.7  Docking domain of Afi1 for Arf3 in vesicle trafficking


Domain annotation for each model (and alignments):
>> PF02493.15  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   9.9e-05      0.45       1      21 [.     442     463 ..     442     464 .. 0.94
   2 !   16.2   0.1   1.2e-06    0.0053       1      21 [.     465     485 ..     465     487 .. 0.95
   3 ?    0.6   0.1      0.11   4.8e+02       1      12 [.     489     500 ..     489     501 .. 0.93
   4 !    6.8   0.2    0.0012       5.4       2      14 ..     518     530 ..     517     533 .. 0.90
   5 ?    2.4   0.0     0.029   1.3e+02       1      17 [.     543     559 ..     543     561 .. 0.89
   6 !   14.7   1.0   3.6e-06     0.016       2      17 ..     586     601 ..     585     602 .. 0.87
   7 ?   -1.0   0.1      0.35   1.6e+03       3       9 ..     635     641 ..     634     642 .. 0.86
   8 ?   -3.0   0.0       1.5   6.7e+03      10      22 ..     665     677 ..     664     678 .. 0.84
   9 !   16.7   0.0   8.4e-07    0.0038       1      22 [.     705     726 ..     705     727 .. 0.97
  10 !    5.7   0.0    0.0026        12       1      22 [.     728     749 ..     728     750 .. 0.94
  11 ?   -3.8   0.0       2.7   1.2e+04      16      22 ..     880     886 ..     874     886 .. 0.70
  12 !   16.9   0.0   7.4e-07    0.0034       1      17 [.     888     904 ..     888     906 .. 0.95
  13 !   14.6   0.9   3.9e-06     0.018       1      20 [.     912     931 ..     912     934 .. 0.89
  14 ?    3.3   0.1     0.015        69       1      11 [.     936     946 ..     936     949 .. 0.85
  15 !   17.8   0.0   3.8e-07    0.0017       1      17 [.     958     974 ..     958     979 .. 0.93
  16 !   16.3   0.3   1.1e-06    0.0051       1      20 [.     981    1000 ..     981    1003 .. 0.93
  17 !   20.3   0.2   6.1e-08   0.00028       1      20 [.    1005    1024 ..    1005    1025 .. 0.97
  18 !   15.8   1.7   1.7e-06    0.0075       1      17 [.    1028    1044 ..    1028    1050 .. 0.87
  19 !   13.7   0.1   7.5e-06     0.034       1      23 []    1053    1075 ..    1053    1075 .. 0.94
  20 ?   -2.0   0.0      0.71   3.2e+03       2      10 ..    1077    1085 ..    1077    1086 .. 0.88
  21 ?   -0.2   0.0       0.2   9.2e+02      15      23 .]    1092    1100 ..    1092    1100 .. 0.87
  22 ?   -2.2   0.0      0.86   3.9e+03       1      11 [.    1101    1111 ..    1101    1111 .. 0.88
  23 !   10.6   0.3   7.5e-05      0.34       1      21 [.    1126    1146 ..    1126    1148 .. 0.93
  24 !    4.2   0.0     0.008        36      11      22 ..    1161    1172 ..    1149    1173 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.9e-05
                  EE-EE.ETTEEE-EEEB----- CS
   PF02493.15   1 YeGeW.knGkrhGkGvytwpdG 21 
                  YeG +  n++r+G+G+++  dG
  MMETSP0890-20130614|40270_1 442 YEGGFdENNLRDGQGILRTEDG 463
                  9***************998887 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.2e-06
                  EE-EEETTEEE-EEEB----- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdG 21 
                  YeGe++ G r+G+G+  ++dG
  MMETSP0890-20130614|40270_1 465 YEGEFVAGNRCGQGIWLSSDG 485
                  ******************999 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.11
                  EE-EEETTEEE- CS
   PF02493.15   1 YeGeWknGkrhG 12 
                  Y+G W ++k hG
  MMETSP0890-20130614|40270_1 489 YQGPWAYDKEHG 500
                  9999******** PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0012
                  E-EEETTEEE-EE CS
   PF02493.15   2 eGeWknGkrhGkG 14 
                   Ge+++G +hG G
  MMETSP0890-20130614|40270_1 518 KGEFQYGNCHGVG 530
                  7**********99 PP

  == domain 5    score: 2.4 bits;  conditional E-value: 0.029
                  EE-EEETTEEE-EEEB- CS
   PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                  Y Ge  +G+++G G + 
  MMETSP0890-20130614|40270_1 543 YRGELFEGLPDGAGSLD 559
                  99**********99875 PP

  == domain 6    score: 14.7 bits;  conditional E-value: 3.6e-06
                  E-EEETTEEE-EEEB- CS
   PF02493.15   2 eGeWknGkrhGkGvyt 17 
                   GeW++G+rhG G+ +
  MMETSP0890-20130614|40270_1 586 TGEWRRGRRHGVGHSV 601
                  6************965 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 0.35
                  -EEETTE CS
   PF02493.15   3 GeWknGk 9  
                  GeW+++k
  MMETSP0890-20130614|40270_1 635 GEWQQDK 641
                  ****998 PP

  == domain 8    score: -3.0 bits;  conditional E-value: 1.5
                  EE-EEEB------ CS
   PF02493.15  10 rhGkGvytwpdGd 22 
                   +G G +t + Gd
  MMETSP0890-20130614|40270_1 665 LQGLGQLTTAEGD 677
                  68******99998 PP

  == domain 9    score: 16.7 bits;  conditional E-value: 8.4e-07
                  EE-EEETTEEE-EEEB------ CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                  Y G+ + G + GkG++++++Gd
  MMETSP0890-20130614|40270_1 705 YAGQLSSGVPSGKGICRYANGD 726
                  99*******************9 PP

  == domain 10    score: 5.7 bits;  conditional E-value: 0.0026
                  EE-EEETTEEE-EEEB------ CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpdGd 22 
                  Y+G++  G+r+G G+++ +dG 
  MMETSP0890-20130614|40270_1 728 YQGDFCCGLRDGDGTLVRADGE 749
                  99******************95 PP

  == domain 11    score: -3.8 bits;  conditional E-value: 2.7
                  B------ CS
   PF02493.15  16 ytwpdGd 22 
                   ++p+Gd
  MMETSP0890-20130614|40270_1 880 VRYPNGD 886
                  5799*97 PP

  == domain 12    score: 16.9 bits;  conditional E-value: 7.4e-07
                  EE-EEETTEEE-EEEB- CS
   PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                  YeG + nG+rhG G++t
  MMETSP0890-20130614|40270_1 888 YEGAFINGLRHGRGIFT 904
                  ***************98 PP

  == domain 13    score: 14.6 bits;  conditional E-value: 3.9e-06
                  EE-EEETTEEE-EEEB---- CS
   PF02493.15   1 YeGeWknGkrhGkGvytwpd 20 
                  Y+G W +G+rhG G+++  d
  MMETSP0890-20130614|40270_1 912 YDGFWEKGRRHGTGTFVTGD 931
                  9**************98655 PP

  == domain 14    score: 3.3 bits;  conditional E-value: 0.015
                  EE-EEETTEEE CS
   PF02493.15   1 YeGeWknGkrh 11 
                  ++G+W++G+r 
  MMETSP0890-20130614|40270_1 936 FDGTWRHGRRV 946
                  69*******97 PP

  == domain 15    score: 17.8 bits;  conditional E-value: 3.8e-07
                  EE-EEETTEEE-EEEB- CS
   PF02493.15   1 YeGeWknGkrhGkGvyt 17 
                  Y+GeWkn ++hG+G+++
  MMETSP0890-20130614|40270_1 958 YSGEWKNSLFHGQGKLI 974
                  9**************86 PP

  == domain 16    score: 16.3 bits;  conditional E-value: 1.1e-06
                   EE-EEETTEEE-EEEB---- CS
   PF02493.15    1 YeGeWknGkrhGkGvytwpd 20  
                   Y+Ge+++G++ G G+ t+ d
  MMETSP0890-20130614|40270_1  981 YIGEFQQGRKSGIGKQTYFD 1000
                   9****************987 PP

  == domain 17    score: 20.3 bits;  conditional E-value: 6.1e-08
                   EE-EEETTEEE-EEEB---- CS
   PF02493.15    1 YeGeWknGkrhGkGvytwpd 20  
                   Y G W nG r+G+G++++ +
  MMETSP0890-20130614|40270_1 1005 YTGSWLNGERNGHGTCVYTN 1024
                   9*****************87 PP

  == domain 18    score: 15.8 bits;  conditional E-value: 1.7e-06
                   EE-EEETTEEE-EEEB- CS
   PF02493.15    1 YeGeWknGkrhGkGvyt 17  
                   Y+GeWk++k hG+G + 
  MMETSP0890-20130614|40270_1 1028 YCGEWKDDKWHGHGQLL 1044
                   9*************875 PP

  == domain 19    score: 13.7 bits;  conditional E-value: 7.5e-06
                   EE-EEETTEEE-EEEB------- CS
   PF02493.15    1 YeGeWknGkrhGkGvytwpdGdr 23  
                   ++G +++ krhG+Gv t  dG++
  MMETSP0890-20130614|40270_1 1053 FDGVFQKSKRHGFGVQTDEDGTT 1075
                   6899*****************96 PP

  == domain 20    score: -2.0 bits;  conditional E-value: 0.71
                   E-EEETTEE CS
   PF02493.15    2 eGeWknGkr 10  
                   eG W ++++
  MMETSP0890-20130614|40270_1 1077 EGYWNQDQP 1085
                   8******98 PP

  == domain 21    score: -0.2 bits;  conditional E-value: 0.2
                   EB------- CS
   PF02493.15   15 vytwpdGdr 23  
                   ++t+pdG++
  MMETSP0890-20130614|40270_1 1092 TLTFPDGSV 1100
                   68*****85 PP

  == domain 22    score: -2.2 bits;  conditional E-value: 0.86
                   EE-EEETTEEE CS
   PF02493.15    1 YeGeWknGkrh 11  
                   Y G  k+G++h
  MMETSP0890-20130614|40270_1 1101 YVGLLKHGQPH 1111
                   88889999999 PP

  == domain 23    score: 10.6 bits;  conditional E-value: 7.5e-05
                   EE-EEETTEEE-EEEB----- CS
   PF02493.15    1 YeGeWknGkrhGkGvytwpdG 21  
                   Y+G + +Gk+ GkG  ++++G
  MMETSP0890-20130614|40270_1 1126 YQGAFEHGKKSGKGYAIFSSG 1146
                   9*************9999888 PP

  == domain 24    score: 4.2 bits;  conditional E-value: 0.008
                   E-EEEB------ CS
   PF02493.15   11 hGkGvytwpdGd 22  
                    G+Gv+t pdG+
  MMETSP0890-20130614|40270_1 1161 SGSGVLTLPDGT 1172
                   69*********7 PP

>> PF09794.4  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.1e-10   1.4e-06       5     378 ..      18     380 ..      15     381 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 3.1e-10
    PF09794.4   5 vvvdFhHkkGpevefsyppeeeekeeleeewklLpflaLpDGaHnfeedfvyFtllede....seteeektlfgiscvrQikaeelkkrtadvtRstvQKavvvlskkpifgklkekLsiitkayfeqkdfsnteilkelyeslnaelkskekeeleeselyvglslrelvlkfrhkvLvlfKlllLekkvlvygspveklcelllsllSLipklleklqdsaspllessesdwelskpeslkesdrksvlrflglPlqiFekgalflPYlpLqqldlLsdktvks.flvGtsNsLllqqkell...vdvlvdvde.......aeieik.dkelkkalqlstaDkrfidslvk...kveetkedaeeeregfeGsdewiRaqfeeYllsllss 378
                  ++++F    Gp v ++ p +  +ke  ++   +L fl L+  a + +e  +  + +  +     + +++ ++fg s +   +a++  +r         Q av vls++p f+ l+ +    +   +e   ++  +  +++  s +a  +  +     + +   +++   +vl++ + ++ l++ ++    +++++s+ ++ ++++++l S +p l++     + ++  ++++  +l  ++       + + r  g+Pl+   +g+ +lP +++ qld+L    +k+  + Gt Ns+l+++         +++d+d        ++i+++ +++   +  l t+ k+ + +l++   k ++ +e+++++++g+ Gs  w+  qf+++l++ +++
  MMETSP0890-20130614|40270_1  18 CLIEFDEVEGPVVRWIEPDNGMSKELRKRCNDELAFLCLAENASSISESRSDSSDHAGTtwirVHVSDNDCVFGASAMVSERAKH--QRG-------RQLAVAVLSRFPAFDALEIRARALSVVALESASMNARSTARQVAFSAAARCRCPS----FDGDYAAAIPCERFVLQHAEITVRLIRSIITGSSLVCFSSKSSSASRAVVALASVLPALISL----GWSTYVNVSTA-PLLGKH-------DFNWRRAGFPLA---TGTHWLPAVSMAQLDDL--LLFKGpLVLGTCNSMLARRLADApqtQAIILDLDAldapdsgNSISLPqNNKDVYNWPLDTHSKKLVTTLLEfssKLSTRSEKQHDNNNGWLGSSSWVQRQFKHWLIAEMRT 380
                  799***************777777777778889*********99999887755444333455589999******99864333333..222.......2889**************9999999999999999999988876555544433222....245678899999***********************************************975....33333333333.344444.......447899****96...7999*************..666662678*******987544333155666665422232335677662333445567999999999999752226666777777777******************997766 PP

>> PF07792.7  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     1e-05     0.047       5      47 ..      18      63 ..      15      70 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
    PF07792.7  5 cvveFDlkrGpevehqypkd...lslseselsnLaflsLPDgihes 47
                 c++eFD   Gp+v +  p++   + l      +Lafl L  +++++
  MMETSP0890-20130614|40270_1 18 CLIEFDEVEGPVVRWIEPDNgmsKELRKRCNDELAFLCLAENASSI 63
                 9*******************88844444455566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1244 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.67u 0.40s 00:00:02.06 Elapsed: 00:00:01.45
# Mc/sec: 2055.91
//
Query:       MMETSP0890-20130614|40275_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       130  (0.00950848); expected 273.4 (0.02)
Passed bias filter:                      128  (0.0093622); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 135.79
//
Query:       MMETSP0890-20130614|40276_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       356  (0.0260386); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.39s 00:00:01.34 Elapsed: 00:00:00.88
# Mc/sec: 1742.81
//
Query:       MMETSP0890-20130614|40285_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 211.68
//
Query:       MMETSP0890-20130614|40289_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   17.6   0.5       0.12   11.9   0.0    3.4  3  PF13414.1 TPR repeat
     0.0022   17.7   0.0         33    4.4   0.0    3.9  4  PF13041.1 PPR repeat family
  ------ inclusion threshold ------
      0.016   15.7   4.2         11    6.7   0.3    5.0  4  PF13432.1 Tetratricopeptide repeat
      0.024   14.9   2.7        1.8    9.0   0.3    3.8  2  PF07721.9 Tetratricopeptide repeat
       0.19   12.3   5.7        3.9    8.2   0.1    5.4  6  PF13428.1 Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.063   1.7e+02      37      63 ..     112     137 ..      87     143 .. 0.78
   2 !   11.9   0.0   4.3e-05      0.12      17      60 ..     332     393 ..     328     395 .. 0.93
   3 ?   -3.2   0.0       2.1   5.9e+03      13      22 ..     685     694 ..     683     697 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.063
    PF13414.1  37 aelyynlAlaylklgkdyeeAledyek 63 
                  a++++  A++ + +g +++ A++ + +
  MMETSP0890-20130614|40289_1 112 ASAHCSVAKVAITRG-KFKTAYRICLR 137
                  569999999999999.59999887765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 4.3e-05
    PF13414.1  17 gdydeAieayekAleldpnnae...................lyynlAlaylklgkdyeeAled 60 
                  ++yd+++++++++l+l p  ++                   +  ++A a+  lg d+++Al +
  MMETSP0890-20130614|40289_1 332 NKYDQSLKQLRRGLDLVPFQPKkkeqtvrqgsiregrgdpgIQTARARAFVALG-DFDAALNE 393
                  89**************99999999999999************************.7****976 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 2.1
    PF13414.1  13 lfkegdydeA 22 
                  l+++g++deA
  MMETSP0890-20130614|40289_1 685 LLEKGEHDEA 694
                  5667777777 PP

>> PF13041.1  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.016        44       5      38 ..     540     570 ..     537     577 .. 0.85
   2 ?    4.1   0.0     0.015        40      35      46 ..     592     603 ..     588     606 .. 0.88
   3 ?    4.4   0.0     0.012        33      30      48 ..     630     648 ..     618     650 .. 0.82
   4 ?   -2.9   0.0       2.3   6.4e+03      10      23 ..     682     695 ..     676     696 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.016
    PF13041.1   5 tYNtlIsglckkgkveeAfklfneMkkrgikPnv 38 
                  t N+l+  l+   + ++A  l+  M++    Pn+
  MMETSP0890-20130614|40289_1 540 TANALLEILVAVSRHNDARHLLTAMRRD---PNT 570
                  88***********************985...555 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.015
    PF13041.1  35 kPnvyTYsilik 46 
                  +P+++TY+i ++
  MMETSP0890-20130614|40289_1 592 RPDAFTYNIFLR 603
                  69*******986 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.012
    PF13041.1  30 kkrgikPnvyTYsilikgl 48 
                     g+kPn+ T  il++ +
  MMETSP0890-20130614|40289_1 630 TNDGLKPNADTIDILLSFF 648
                  5789***********9866 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 2.3
    PF13041.1  10 IsglckkgkveeAf 23 
                  + +l++kg+ +eA 
  MMETSP0890-20130614|40289_1 682 LASLLEKGEHDEAR 695
                  77899*******96 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.2   8.8e+03       4      20 ..     119     135 ..     117     151 .. 0.83
   2 ?    6.7   0.3     0.004        11      12      65 .]     333     389 ..     327     394 .. 0.52
   3 ?   -1.0   0.0         1   2.9e+03      43      62 ..     550     568 ..     540     571 .. 0.49
   4 ?    4.7   0.0     0.016        44       9      63 ..     651     707 ..     647     709 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.2
    PF13432.1   4 ArallraGdydeAlaal 20 
                  A+ ++ +G+++ A+++ 
  MMETSP0890-20130614|40289_1 119 AKVAITRGKFKTAYRIC 135
                  78899999999999875 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.004
    PF13432.1  12 dydeAlaaleaalala...PeaaeallllaeallrlgrldeAaallraalalaPddp 65 
                  +yd+ l++l++ l+l    P+  e   + + +   +g++    a  ra++al+++d+
  MMETSP0890-20130614|40289_1 333 KYDQSLKQLRRGLDLVpfqPKKKEQTVRQGSIREGRGDPGIQTARARAFVALGDFDA 389
                  566666666666666655544444444444444444444444444444444444332 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1
    PF13432.1  43 rlgrldeAaallraalalaP 62 
                  + +r+ +A+ ll a+ +++P
  MMETSP0890-20130614|40289_1 550 AVSRHNDARHLLTAM-RRDP 568
                  334444455444444.4444 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.016
    PF13432.1   9 raGdydeAlaaleaalala...PeaaeallllaeallrlgrldeAaallraalalaPd 63 
                  +++d++ A+  ++++  ++   P    +  +la +ll++g++deA+++   + +l+P 
  MMETSP0890-20130614|40289_1 651 QQNDPATAITFIQDFFNQYesrPSPISFVHFLA-SLLEKGEHDEARRAVYVLDQLWPL 707
                  677888888888888888887775444444444.455999******887777777776 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3   0.00067       1.8       5      21 ..     375     391 ..     371     394 .. 0.87
   2 ?    3.4   0.1     0.044   1.2e+02      11      23 ..     685     697 ..     680     698 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00067
                  ---HHHHHH-------H CS
    PF07721.9   5 laLArallalGdldeAr 21 
                   a+Ara  alGd+d+A+
  MMETSP0890-20130614|40289_1 375 TARARAFVALGDFDAAL 391
                  689*************8 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.044
                  HHH-------HHH CS
    PF07721.9  11 llalGdldeAral 23 
                  ll+ G++deAr++
  MMETSP0890-20130614|40289_1 685 LLEKGEHDEARRA 697
                  6777*******96 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.66   1.8e+03       7      32 ..     118     143 ..     112     153 .. 0.79
   2 ?   -0.8   0.0       1.1   3.1e+03      14      32 ..     331     349 ..     328     352 .. 0.82
   3 ?    8.2   0.1    0.0014       3.9       3      22 ..     373     392 ..     371     394 .. 0.87
   4 ?   -1.8   0.0       2.5   6.7e+03       6      33 ..     543     569 ..     540     573 .. 0.69
   5 ?   -1.1   0.0       1.4     4e+03      12      31 ..     650     669 ..     640     685 .. 0.71
   6 ?   -0.5   0.0      0.94   2.6e+03      10      23 ..     684     697 ..     679     703 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.66
    PF13428.1   7 larallalGdpdeAiallrralalaP 32 
                   a + + +G ++ A + + r+ +la 
  MMETSP0890-20130614|40289_1 118 VAKVAITRGKFKTAYRICLRWRRLAE 143
                  5889999*******999988876655 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
    PF13428.1  14 lGdpdeAiallrralalaP 32 
                   + +d+ +++lrr l l P
  MMETSP0890-20130614|40289_1 331 FNKYDQSLKQLRRGLDLVP 349
                  6789*********998755 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0014
    PF13428.1   3 allalarallalGdpdeAia 22 
                   + a+ara+ alGd+d+A++
  MMETSP0890-20130614|40289_1 373 IQTARARAFVALGDFDAALN 392
                  6789************9985 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 2.5
    PF13428.1   6 alarallalGdpdeAiallrralalaPd 33 
                  al ++l a  ++ +A+ ll ++ +++P+
  MMETSP0890-20130614|40289_1 543 ALLEILVAVSRHNDARHLLTAM-RRDPN 569
                  5666777777777777777776.66776 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 1.4
    PF13428.1  12 lalGdpdeAiallrralala 31 
                  ++++dp+ Ai   ++   ++
  MMETSP0890-20130614|40289_1 650 EQQNDPATAITFIQDFFNQY 669
                  67899****99988876554 PP

  == domain 6    score: -0.5 bits;  conditional E-value: 0.94
    PF13428.1  10 allalGdpdeAial 23 
                   ll+ G++deA+++
  MMETSP0890-20130614|40289_1 684 SLLEKGEHDEARRA 697
                  578899*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       686  (0.0501755); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.12u 0.41s 00:00:01.53 Elapsed: 00:00:01.00
# Mc/sec: 1770.91
//
Query:       MMETSP0890-20130614|40300_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-37  126.9   5.8    5.2e-19   68.2   0.3    3.0  3  PF12796.2  Ankyrin repeats (3 copies)
    2.8e-32  108.7  11.5    3.8e-07   29.4   0.2    6.3  5  PF00023.25 Ankyrin repeat
    1.5e-28   98.5   3.3    1.6e-07   31.5   0.0    4.3  4  PF13637.1  Ankyrin repeats (many copies)
    4.3e-25   87.0   8.0    1.3e-11   44.2   0.2    4.9  5  PF13857.1  Ankyrin repeats (many copies)
      3e-21   73.2   3.9    0.00014   21.6   0.0    5.5  5  PF13606.1  Ankyrin repeat


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   7.5e-09   2.1e-05      28      85 ..      14      74 ..       5      77 .. 0.75
   2 !   68.2   0.3   1.9e-22   5.2e-19       2      88 ..      53     144 ..      52     145 .. 0.94
   3 !   49.9   0.3   9.8e-17   2.7e-13       9      78 ..     127     200 ..     126     208 .. 0.96

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 7.5e-09
    PF12796.2 28 t..pLhlAaeagnl.eivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85
                 t   +  Aae+g+   +v     +g d+   d+ g+++ hlA+++ h+ +v++Ll++ga v
  MMETSP0890-20130614|40300_1 14 TfySIWTAAEYGDEgSVVAHVEGRGLDPGILDDFGYSAVHLAAQHDHVNIVRYLLSRGAGV 74
                 5445666777777514555555589999999999999999999999999999999999876 PP

  == domain 2    score: 68.2 bits;  conditional E-value: 1.9e-22
    PF12796.2   2 hlAaengnlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakd...kegntpLhlAvrnghlelvklLlekgadvnlr 88 
                  hlAa+++++++v++Ll+ ga vd       tpLh Aa ag+l+ +++L++aga+++ +d   ++++tpLh Av+  h+ lv+lLle+ga+v++ 
  MMETSP0890-20130614|40300_1  53 HLAAQHDHVNIVRYLLSRGAGVDGgpasLCTPLHRAAFAGSLQSARILIDAGANLEKQDlsfNDKRTPLHKAVQ--HVALVNLLLERGASVHAV 144
                  9**********************97666666******************************************5..99************9976 PP

  == domain 3    score: 49.9 bits;  conditional E-value: 9.8e-17
    PF12796.2   9 nlelvklLlekgadvdl....getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklL 78 
                  ++ lv+lLle ga+v+     g tpLh+Aa  gn + ++ Ll+aga + a+d++g tp ++A+r+gh+ ++ +L
  MMETSP0890-20130614|40300_1 127 HVALVNLLLERGASVHAvdasGATPLHVAATCGNSQSIQSLLNAGALLKARDHQGLTPAYYAARAGHANIATFL 200
                  7899*******************************************************************998 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.5e-09     4e-06       2      28 ..      48      74 ..      47      75 .. 0.94
   2 !   27.9   0.0   4.2e-10   1.2e-06       3      32 ..      82     111 ..      81     112 .. 0.96
   3 !   14.8   0.1     6e-06     0.016       2      32 ..     117     145 ..     116     146 .. 0.86
   4 !   29.4   0.2   1.4e-10   3.8e-07       2      32 ..     148     178 ..     147     179 .. 0.95
   5 !   11.9   0.0   5.1e-05      0.14       2      22 ..     181     201 ..     180     207 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.5e-09
                 SCBHHHHHHHTTHHHHHHHHHHTTSST CS
   PF00023.25  2 GfTPLHlAalrgnlevvklLlsqGAdl 28
                 G+++ HlAa+++++++v++Lls+GA +
  MMETSP0890-20130614|40300_1 48 GYSAVHLAAQHDHVNIVRYLLSRGAGV 74
                 999*********************976 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4.2e-10
                  CBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   3 fTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  +TPLH Aa+ g+l+ ++ L+++GA+l  qd
  MMETSP0890-20130614|40300_1  82 CTPLHRAAFAGSLQSARILIDAGANLEKQD 111
                  6*************************9998 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 6e-06
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                   +TPLH A++  ++  v lLl++GA+++a+d
  MMETSP0890-20130614|40300_1 117 KRTPLHKAVQ--HVALVNLLLERGASVHAVD 145
                  5799999876..677**************98 PP

  == domain 4    score: 29.4 bits;  conditional E-value: 1.4e-10
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  G TPLH+Aa +gn + ++ Ll++GA l a+d
  MMETSP0890-20130614|40300_1 148 GATPLHVAATCGNSQSIQSLLNAGALLKARD 178
                  89*************************9998 PP

  == domain 5    score: 11.9 bits;  conditional E-value: 5.1e-05
                  SCBHHHHHHHTTHHHHHHHHH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLl 22 
                  G TP  +Aa+ g+++++++L 
  MMETSP0890-20130614|40300_1 181 GLTPAYYAARAGHANIATFLN 201
                  99****************995 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-08   3.6e-05       7      54 .]      20      68 ..      16      68 .. 0.87
   2 !   26.9   0.0   1.6e-09   4.3e-06       3      44 ..      83     127 ..      82     127 .. 0.92
   3 !   31.5   0.0   5.9e-11   1.6e-07      13      51 ..     127     165 ..     126     168 .. 0.92
   4 !   17.1   0.1   1.9e-06    0.0052      16      53 ..     163     200 ..     161     200 .. 0.95

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.3e-08
    PF13637.1  7 yaaisgrlelvklLle.kgidinrtdesGntaLhiAalrgnieilklLl 54
                  aa +g++  v   +e +g d+  +d++G +a+h+Aa++ +++i+++Ll
  MMETSP0890-20130614|40300_1 20 TAAEYGDEGSVVAHVEgRGLDPGILDDFGYSAVHLAAQHDHVNIVRYLL 68
                 5788888888777776379*****************************8 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.6e-09
    PF13637.1   3 taLhyaaisgrlelvklLlekgidinrtd...esGntaLhiAalr 44 
                  t+Lh+aa +g l+ ++ L++ g+++ ++d   ++ +t+Lh+A+++
  MMETSP0890-20130614|40300_1  83 TPLHRAAFAGSLQSARILIDAGANLEKQDlsfNDKRTPLHKAVQH 127
                  79**************************64458899*******86 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 5.9e-11
    PF13637.1  13 rlelvklLlekgidinrtdesGntaLhiAalrgnieilk 51 
                  ++ lv+lLle+g++++++d+sG t+Lh+Aa  gn + ++
  MMETSP0890-20130614|40300_1 127 HVALVNLLLERGASVHAVDASGATPLHVAATCGNSQSIQ 165
                  7889******************************99876 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 1.9e-06
    PF13637.1  16 lvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                   +++Ll+ g+ + ++d +G t+ ++Aa++g+ +i+ +L
  MMETSP0890-20130614|40300_1 163 SIQSLLNAGALLKARDHQGLTPAYYAARAGHANIATFL 200
                  6899*****************************99998 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.3e-08    0.0002       6      41 ..      38      75 ..      33      77 .. 0.86
   2 !   18.4   0.0     6e-07    0.0016       6      46 ..      78     111 ..      74     113 .. 0.84
   3 !   14.3   0.0   1.2e-05     0.032      10      49 ..     115     148 ..     107     148 .. 0.84
   4 !   44.2   0.2   4.8e-15   1.3e-11       1      56 []     134     188 ..     134     188 .. 0.98
   5 !    7.0   0.0    0.0023       6.4      16      34 ..     181     199 ..     180     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 7.3e-08
    PF13857.1  6 padvnatdeggntpLhlAakggalevvrlLl..apgad 41
                  +d+  +d +g+++ hlAa + ++++vr+Ll   +g+d
  MMETSP0890-20130614|40300_1 38 GLDPGILDDFGYSAVHLAAQHDHVNIVRYLLsrGAGVD 75
                 58999**************************6666665 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 6e-07
    PF13857.1   6 padvnatdeggntpLhlAakggalevvrlLlapgadlnlrd 46 
                  pa+++       tpLh Aa +g+l+ +r+L+++ga+l  +d
  MMETSP0890-20130614|40300_1  78 PASLC-------TPLHRAAFAGSLQSARILIDAGANLEKQD 111
                  55555.......**********************9987665 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 1.2e-05
    PF13857.1  10 natdeggntpLhlAakggalevvrlLlapgadlnlrdsdg 49 
                  n+ +    tpLh+A+   ++ +v lLl++ga+ ++ d++g
  MMETSP0890-20130614|40300_1 115 NDKR----TPLHKAVQ--HVALVNLLLERGASVHAVDASG 148
                  4444....********..****************999987 PP

  == domain 4    score: 44.2 bits;  conditional E-value: 4.8e-15
    PF13857.1   1 LlehgpadvnatdeggntpLhlAakggalevvrlLlapgadlnlrdsdgltaldlA 56 
                  Lle+g a+v+a d +g tpLh+Aa +g+++ ++ Ll++ga l++rd +glt+  +A
  MMETSP0890-20130614|40300_1 134 LLERG-ASVHAVDASGATPLHVAATCGNSQSIQSLLNAGALLKARDHQGLTPAYYA 188
                  8****.**********************************************9988 PP

  == domain 5    score: 7.0 bits;  conditional E-value: 0.0023
    PF13857.1  16 gntpLhlAakggalevvrl 34 
                  g tp ++Aa++g+++++ +
  MMETSP0890-20130614|40300_1 181 GLTPAYYAARAGHANIATF 199
                  78************99866 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.1e-08   0.00014       2      28 ..      48      74 ..      47      76 .. 0.92
   2 !   15.3   0.0   5.4e-06     0.015       3      29 ..      82     108 ..      80     109 .. 0.93
   3 !   12.8   0.0   3.5e-05     0.096       2      29 ..     117     142 ..     116     143 .. 0.89
   4 !   14.0   0.0   1.5e-05      0.04       2      28 ..     148     174 ..     147     176 .. 0.91
   5 !    6.2   0.0     0.005        14       2      21 ..     181     200 ..     180     207 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.1e-08
    PF13606.1  2 GnTpLhlAasngrielveaLlengadi 28
                 G+++ hlAa++ ++++v++Ll++ga +
  MMETSP0890-20130614|40300_1 48 GYSAVHLAAQHDHVNIVRYLLSRGAGV 74
                 99*********************9976 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 5.4e-06
    PF13606.1   3 nTpLhlAasngrielveaLlengadin 29 
                  +TpLh Aa  g+++ +++L+++ga++ 
  MMETSP0890-20130614|40300_1  82 CTPLHRAAFAGSLQSARILIDAGANLE 108
                  8***********************985 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 3.5e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlengadin 29 
                   +TpLh A+  ++++lv++Lle+ga ++
  MMETSP0890-20130614|40300_1 117 KRTPLHKAV--QHVALVNLLLERGASVH 142
                  58******9..679***********987 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 1.5e-05
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G TpLh+Aa +g+ + ++ Ll++ga +
  MMETSP0890-20130614|40300_1 148 GATPLHVAATCGNSQSIQSLLNAGALL 174
                  67**********************965 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.005
    PF13606.1   2 GnTpLhlAasngrielveaL 21 
                  G Tp ++Aa+ g+ +++ +L
  MMETSP0890-20130614|40300_1 181 GLTPAYYAARAGHANIATFL 200
                  89***********9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       340  (0.0248683); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.38s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 1442.25
//
Query:       MMETSP0890-20130614|40309_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       348  (0.0254535); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.40s 00:00:00.83 Elapsed: 00:00:00.70
# Mc/sec: 551.16
//
Query:       MMETSP0890-20130614|40308_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-05   22.1   0.2     0.0003   20.4   0.2    1.9  1  PF00627.26 UBA/TS-N domain
  ------ inclusion threshold ------
      0.019   13.9   0.0      0.031   13.2   0.0    1.2  1  PF09552.5  BstXI restriction endonuclease
      0.091   10.8   0.0       0.18    9.8   0.0    1.4  1  PF09959.4  Uncharacterized protein conserved in archaea (DUF2193)


Domain annotation for each model (and alignments):
>> PF00627.26  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   6.5e-08    0.0003       2      37 .]     352     390 ..     351     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.5e-08
                  THHHHHHHHH----HHHHHHHHHHTTT...SHHHHHHHH CS
   PF00627.26   2 deeaiqqLreMGfsreeakkALratnn...nvErAveyL 37 
                  d+++++ +++MGf++++a+ AL at       ++Av++L
  MMETSP0890-20130614|40308_1 352 DPAQLAAVLDMGFDEQNARLALAATIKtggTADQAVQWL 390
                  789*******************98755444888888887 PP

>> PF09552.5  BstXI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.8e-06     0.031     179     265 ..     381     471 ..     366     480 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.8e-06
    PF09552.5 179 esleaaidygmsakdarkrkdesyneaeeqgl...leeielleeriidkdkvtvCPlClekisasgla.ekseqvefrevgdltsteinlf 265
                   + + a+++ +s +da+   d   n    q +   l     +e+ri+d+ + t  P+C  +  ++ +  e+ ++   re      ++ +l 
  MMETSP0890-20130614|40308_1 381 GTADQAVQWLLSRRDANGEDDLVANLIASQAVsshLATSPIMEHRILDEPRRTAYPVCAIRAVSQQVLdEHRQRLRSREHASAEYASASLN 471
                  578999***************9999888888877799999******************977655555505555555566555555555554 PP

>> PF09959.4  Uncharacterized protein conserved in archaea (DUF2193)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0     4e-05      0.18     390     433 ..     394     441 ..     388     449 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4e-05
    PF09959.4 390 rvkngseeklkpkvgglev....dlspieknevlmnpqryaypacait 433
                  r +ng+++ ++  + +  v      spi +  +l +p+r ayp cai 
  MMETSP0890-20130614|40308_1 394 RDANGEDDLVANLIASQAVsshlATSPIMEHRILDEPRRTAYPVCAIR 441
                  56667666666666554441111579********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.40s 00:00:01.36 Elapsed: 00:00:00.73
# Mc/sec: 1736.54
//
Query:       MMETSP0890-20130614|40329_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.18   11.7   5.4       0.39   10.6   3.7    1.5  1  PF09429.5  WW domain binding protein 11
       0.28   11.3   1.4       0.46   10.6   0.9    1.4  1  PF13524.1  Glycosyl transferases group 1
       0.36   10.8   3.8       0.13   12.3   0.4    1.8  2  PF00804.20 Syntaxin


Domain annotation for each model (and alignments):
>> PF09429.5  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.7   8.5e-05      0.39      23      72 ..      58     105 ..      56     111 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.5e-05
    PF09429.5  23 KkerqkrReaklakkdpeelkeeldkLkeqesggklekvekeklkklekd 72 
                  Kk+rq ++++ +++  pe+l++++++L+     + l++++++ l++ e+d
  MMETSP0890-20130614|40329_1  58 KKRRQRNHQEDILAESPEDLRRQIEALTLD--LERLKQRHRRALERAEQD 105
                  99*************************998..556677777777777766 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9    0.0001      0.46      42      80 ..      67     105 ..      51     112 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
    PF13524.1  42 eivlfedleelaeklryllanpeereaiaeaarervlae 80 
                  e +l+e++e+l ++++ l  + e++++  ++a er++++
  MMETSP0890-20130614|40329_1  67 EDILAESPEDLRRQIEALTLDLERLKQRHRRALERAEQD 105
                  557889*****************************9986 PP

>> PF00804.20  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.34   1.5e+03      75      75 ..      48      48 ..      20      71 .. 0.54
   2 ?   12.3   0.4   2.9e-05      0.13      10      41 ..      75     128 ..      65     147 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.34
   PF00804.20 75 e 75
                 +
  MMETSP0890-20130614|40329_1 48 N 48
                 2 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.9e-05
   PF00804.20  10 eeIrgeiekisekveelkrlhsrilaspdpd......................k 41 
                  e+ r++ie ++ ++e+lk+ h+r l    +d                       
  MMETSP0890-20130614|40329_1  75 EDLRRQIEALTLDLERLKQRHRRALERAEQDpaivhnqipavatgtddgsniiV 128
                  789999999999999999999999999997766666555555555555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1117  (0.0816998); expected 273.4 (0.02)
Passed bias filter:                      674  (0.0492978); expected 273.4 (0.02)
Passed Vit filter:                        87  (0.00636337); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.71
# Mc/sec: 506.27
//
Query:       MMETSP0890-20130614|40325_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-100  336.0   0.0   1.9e-100  335.7   0.0    1.1  1  PF00225.18 Kinesin motor domain


Domain annotation for each model (and alignments):
>> PF00225.18  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.7   0.0  1.4e-104  1.9e-100      30     334 ..      48     347 ..      17     348 .. 0.91

  Alignments for each domain:
  == domain 1    score: 335.7 bits;  conditional E-value: 1.4e-104
                  EECCTTTCCTEEEEEESEEEETTS-HHHHHHHHHHHHHHHHH----EEEEEE--TT---HHHHH-.TTTTC---HHHHHHHHHHHHHCCTTTHTEEEEEEEEEEEEETTEEEETTSTTT.TS-SS.BEEEECTTTCCEEECT---EEESSHHHHHHHHHHHHCHSHTTTSHHCHHHCTSEEEEEEEEEEEETTTTTT.EEEEEEEEEEEE----CCG----.---H-SHHHHHHHHHHHHHHHHHHHHHHT......TTSS-CGGGSHHHHHTGGCH----EEEEEEEE--BGGGHHHHHHHHHHHHHHCT CS
   PF00225.18  30 kskkenkeekekeftFdkvfdeeatqeevyeelakplvesvleGynvtifaYGqtgsGKTytmeGkeeeeekGiipraleelFeeieeekeekekefsvkvsylEiYnekiyDLLesek.ekkkkklkiredskkgkvyvkgltevevksaeevlellekgeknrkvastklneeSSRSHaiftitleqknkeketekeevklsklnLvDLAGsErasktgaaeerrlkEaanINkSLlaLgrvIsaLaen.....kkskhvpYRdSkLTrlLqdsLggnsktlmivtvspsssnleetlstLrfaerakn 334
                   ++++++  ++ +f+Fd vf++++tqe+v+e+ ak+l+ s+l+G++v+ifaYGqtgsGKT+tm+G    +++G+  ra++ lF+  ee   ++  ++++++s+lEiYne+++DLL s++ ++++kkl+i+  s  g+++v gl+ + v+s+ +v  ll++g+k+r+v++++ln++SSRSH+i+t+++  k+ ++      +  skl+LvDLAGsEr++kt aa ++rlkEa+nINkSL+aLg+vI+aL++      ++++hvp+R+SkLT  LqdsL+gnsk lm+v+vsp+ s++ etl++L+fa+r+++
  MMETSP0890-20130614|40325_1  48 ITISRADLGDSVHFEFDGVFNPDSTQEHVFEDAAKDLIISALDGFSVCIFAYGQTGSGKTFTMTGP--PHNRGLNFRAIQMLFNLAEEAAVDNGVTYTLHLSILEIYNETVIDLLPSSSsANNNKKLEIHIAS--GECQVPGLERHLVTSVADVQVLLDRGAKHRSVGAHDLNDQSSRSHQIVTLHICGKTPTS------TLNSKLHLVDLAGSERLAKTDAA-GERLKEAQNINKSLSALGDVIAALSAAsnsrgSTARHVPFRNSKLTFFLQDSLSGNSKALMFVNVSPTPSDVPETLCSLKFAARCRD 347
                  556677778899*****************************************************6..6679****************9999999********************998744455567777755..579***************************************************98554......3469*****************76.556**********************999999999**************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       480  (0.0351083); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.92
# Mc/sec: 1054.92
//
Query:       MMETSP0890-20130614|40335_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   17.0   0.0        1.2    8.1   0.0    2.4  2  PF11962.3 Peptidase_G2, IMC autoproteolytic cleavage domain


Domain annotation for each model (and alignments):
>> PF11962.3  Peptidase_G2, IMC autoproteolytic cleavage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   8.7e-05       1.2      31     102 ..     225     308 ..     205     313 .. 0.57
   2 !    6.4   0.0   0.00028       3.8     168     193 ..     324     349 ..     322     376 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 8.7e-05
    PF11962.3  31 vakikle.....sanGnlkaagavttssaDyAeyfesedgkaidt.....GylVtle..gekIrkaeegddilGviSetaavvl 102
                  ++   +e       +G+++ + +++  +aDyAe f   + ++ ++     G +V l+   +     ++g  ++ ++S+++a+ +
  MMETSP0890-20130614|40335_1 225 NITSTMEidgdlFVRGTIYGKIQSKPLEADYAEWFPIGKDENGKEefllpGSVVRLNpeTSSLTLNTNGLGPILITSTNPAIAA 308
                  3333333112144455555444444445*******7654443333345889999998433334444444447778888887765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00028
    PF11962.3 168 vVGLiGqllvrvdetvepgdlikand 193
                  +V ++Gq+ vr+ + v+pgd++ +  
  MMETSP0890-20130614|40335_1 324 LVAFVGQVPVRCSGIVKPGDQLIPSG 349
                  6899***************7775443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.43s 00:00:01.17 Elapsed: 00:00:00.88
# Mc/sec: 1157.33
//
Query:       MMETSP0890-20130614|40343_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-19   69.1   0.1    4.8e-19   67.9   0.0    1.6  2  PF00781.19 Diacylglycerol kinase catalytic domain
  ------ inclusion threshold ------
      0.015   13.9   0.0       0.02   13.5   0.0    1.2  1  PF01513.16 ATP-NAD kinase
      0.029   12.9   0.0      0.038   12.5   0.0    1.1  1  PF11711.3  Inner membrane protein import complex subunit Tim54
       0.13   11.1   0.0       0.16   10.7   0.0    1.1  1  PF00365.15 Phosphofructokinase


Domain annotation for each model (and alignments):
>> PF00781.19  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   1.4e-22   4.8e-19       1     100 [.      10     129 ..      10     145 .. 0.82
   2 ?   -2.6   0.0      0.87     3e+03      63      79 ..     293     309 ..     292     314 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 1.4e-22
   PF00781.19   1 kllvivNpksGkgkgk.l..kkvieklkkaleelevvetee..ageaealeiaaalkda......ddlivvvGGDGtvnevlngllerelre.........kpplgiiPlGtgNdfaral 100
                  ++lv++Np sG g +  +  k v++ l++a  ++e+  t++  +++++a+ei  + k+a       ++i+v+GGDG v+ev+ gl+++ ++           +p++ +P+G+gN++a +l
  MMETSP0890-20130614|40343_1  10 HVLVVINPASGPGGAMrVyeKSVKPILEAAQLTIELLVTTKagDAHQRAFEIMMNRKNAhefeesIEAILVIGGDGSVSEVVRGLYQACQNLgadwqqslgDIPICHVPAGSGNALAQSL 129
                  79**********9999746899*************99998834445555665555555567899967******************87544444555569999***************998 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.87
   PF00781.19  63 GDGtvnevlngllerel 79 
                  G Gt  +++ngll+ + 
  MMETSP0890-20130614|40343_1 293 GSGTKFKLINGLLQLDE 309
                  77999999****99875 PP

>> PF01513.16  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06      0.02      21      98 ..      33      96 ..      10     126 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.9e-06
                 HHHTT-E-.EEEEEE----------------------.......EEEESS-TCCCGGSSEEEEE-----HHHHHCCHCC CS
   PF01513.16 21 arllldal.vlfvtveeklgesllsasefryevishkekvktlddtrnaaremveegvdlivvlGGDGTaldvarllqd 98
                 + +l++a+  ++++v++k g ++++a+e                  r++a e+ ee++++i+v+GGDG +  v+r l +
  MMETSP0890-20130614|40343_1 33 KPILEAAQlTIELLVTTKAGDAHQRAFEIM--------------MNRKNAHEF-EESIEAILVIGGDGSVSEVVRGLYQ 96
                 444444433566666666666666666622..............234445555.99****************9998765 PP

>> PF11711.3  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.1e-05     0.038      68     132 ..       9      70 ..       5     115 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
    PF11711.3  68 RkltvfiaapPgdgldvalklfrkYvKpiLvaaglDyevieerrqGdiraevaerirklRrkale 132
                  R + v i++    g   a++++ k vKpiL aa l  e++   + Gd  +  a +i   R++a e
  MMETSP0890-20130614|40343_1   9 RHVLVVINPA--SGPGGAMRVYEKSVKPILEAAQLTIELLVTTKAGDAHQ-RAFEIMMNRKNAHE 70 
                  5555555544..345579*****************************765.57778999998874 PP

>> PF00365.15  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.7e-05      0.16      65     106 ..      49      88 ..      23     121 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.7e-05
                  -TT-B---CGGCS--------HHHHH-----EEEE------- CS
   PF00365.15  65 tilgsarlkefkeeegrkkaiekLkkagidalvviGGDGslt 106
                  t  g a  ++f+    rk+a e   ++ i+a++viGGDGs  
  MMETSP0890-20130614|40343_1  49 TKAGDAHQRAFEIMMNRKNAHE--FEESIEAILVIGGDGSVS 88 
                  6667788888888888887765..5789***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       221  (0.0161644); expected 273.4 (0.02)
Passed bias filter:                      220  (0.0160913); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.55s 00:00:01.07 Elapsed: 00:00:00.72
# Mc/sec: 1251.43
//
Query:       MMETSP0890-20130614|40356_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       977  (0.0714599); expected 273.4 (0.02)
Passed bias filter:                      544  (0.0397894); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.47s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 464.29
//
Query:       MMETSP0890-20130614|40359_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        89  (0.00650965); expected 273.4 (0.02)
Passed bias filter:                       87  (0.00636337); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.46s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 197.12
//
Query:       MMETSP0890-20130614|40383_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       404  (0.0295494); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.72
# Mc/sec: 755.52
//
Query:       MMETSP0890-20130614|40389_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 204.40
//
Query:       MMETSP0890-20130614|40388_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.71
# Mc/sec: 779.66
//
Query:       MMETSP0890-20130614|40384_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-05   23.3   0.0    3.6e-05   23.3   0.0    1.0  1  PF00514.18 Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.6e-09   3.6e-05       7      40 ..       2      35 ..       1      36 [. 0.95

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.6e-09
                 HHHHCHHHHHHHHHHC-SSHHHHHHHHHHHHHHH CS
   PF00514.18  7 avieaGavppLvqLLksgdeevqeeAawALsNLa 40
                 ++ eaGa+ pLv+ L+sg  + ++ Aa ++ +L+
  MMETSP0890-20130614|40384_1  2 TIAEAGAISPLVNQLTSGTARAKKLAADTILYLS 35
                 689*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      161  (0.0117759); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.36s 00:00:00.64 Elapsed: 00:00:00.87
# Mc/sec: 104.67
//
Query:       MMETSP0890-20130614|40403_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       301  (0.0220158); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 423.97
//
Query:       MMETSP0890-20130614|40420_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      150  (0.0109713); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.59
# Mc/sec: 499.58
//
Query:       MMETSP0890-20130614|40419_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-15   57.4  14.8      2e-08   34.2   1.5    3.0  3  PF13646.1  HEAT repeats
    8.1e-10   37.8   3.4      0.037   14.0   0.0    4.3  4  PF02985.17 HEAT repeat
    2.2e-09   36.6   5.8    8.4e-05   22.1   0.1    6.1  7  PF00514.18 Armadillo/beta-catenin-like repeat
    2.4e-08   34.2  13.9    5.8e-05   23.4   0.1    4.8  5  PF13513.1  HEAT-like repeat
     0.0011   19.1   0.0        1.2    9.4   0.0    3.1  3  PF12755.2  Vacuolar 14 Fab1-binding region


Domain annotation for each model (and alignments):
>> PF13646.1  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.9e-09   1.1e-05       7      69 ..     120     200 ..     114     203 .. 0.78
   2 !   34.2   1.5   7.3e-12     2e-08       2      77 ..     163     258 ..     162     268 .. 0.81
   3 !   19.5   1.3   2.9e-07   0.00081       2      45 ..     203     258 ..     202     311 .. 0.58

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 3.9e-09
    PF13646.1   7 aLekdpdpevraaaieaLgql.gseea...............lpaLlelLkdsdpevRraAaeaLgklg..dpealpaLlk 69 
                   +++ +d+ vra+a+++ g+l ++++a               l+ ++++++d d ++R+ A+ aLg+ +  +p+ ++ L+ 
  MMETSP0890-20130614|40419_1 120 SILTREDAAVRAKACNLVGNLcRHSDAfysllvrrndagettLEHIIQCASDHDMATRKFACFALGNAAfhSPALYEYLEA 200
                  445899*************65266666777777777777777************************864337777777665 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 7.3e-12
    PF13646.1   2 eaLlaaLekdpdpevraaaieaLg..qlgse.......ealpaLlelL.kdsdpevRraAaeaLgkl...........gdpealpaLlklldddeda 77 
                  e +++ + +d d  +r +a+ aLg   ++s+       +a+++L+++L +d d+++R++Aa aLg+l           + + al+aLl+ +++d+++
  MMETSP0890-20130614|40419_1 163 EHIIQCA-SDHDMATRKFACFALGnaAFHSPalyeyleAAVAPLVAALrTDHDEKTRANAAGALGNLarngpllsrelARQGALQALLDTAANDSSD 258
                  6778888.99999***********7766788666666677********7899***************555444444334789*******99998764 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 2.9e-07
    PF13646.1   2 eaLlaaLekdpdpevraaaieaLg...........qlgseealpaLlelL.kdsdp 45 
                  ++L+aaL +d d+++ra+a+ aLg           +l+ + al+aLl+ + +ds+ 
  MMETSP0890-20130614|40419_1 203 APLVAALRTDHDEKTRANAAGALGnlarngpllsrELARQGALQALLDTAaNDSSD 258
                  45666666666666666666666655555555544444555566666544344333 PP

>> PF02985.17  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0008       2.2      12      30 ..     125     143 ..     125     144 .. 0.91
   2 !   14.0   0.0   1.3e-05     0.037       2      28 ..     162     188 ..     162     191 .. 0.89
   3 !   13.3   0.0   2.2e-05      0.06       3      29 ..     204     230 ..     202     232 .. 0.85
   4 ?   -3.1   0.0         4   1.1e+04      17      26 ..     241     250 ..     241     254 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0008
                  SSHHHHHHHHHHHHHHHHC CS
   PF02985.17  12 pspeVReaAaeaLgalaev 30 
                  +++ VR+ A++ +g+l+++
  MMETSP0890-20130614|40419_1 125 EDAAVRAKACNLVGNLCRH 143
                  5889*************98 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHTSSSHHHHHHHHHHHHHHH CS
   PF02985.17   2 lPlllkllnDpspeVReaAaeaLgala 28 
                  l +++++ +D +   R++A++aLg+ a
  MMETSP0890-20130614|40419_1 162 LEHIIQCASDHDMATRKFACFALGNAA 188
                  5789*******************9855 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 2.2e-05
                  HHHHHHHTSSSHHHHHHHHHHHHHHHH CS
   PF02985.17   3 PlllkllnDpspeVReaAaeaLgalae 29 
                  Pl+  l +D +++ R++Aa aLg+la+
  MMETSP0890-20130614|40419_1 204 PLVAALRTDHDEKTRANAAGALGNLAR 230
                  66666677*****************97 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 4
                  HHHHHHHHHH CS
   PF02985.17  17 ReaAaeaLga 26 
                  R+ A++aL +
  MMETSP0890-20130614|40419_1 241 RQGALQALLD 250
                  6678888765 PP

>> PF00514.18  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0057        16       3      21 ..       3      21 ..       1      36 [. 0.87
   2 ?    0.5   0.0       0.2   5.5e+02       9      22 ..      34      47 ..      28      52 .. 0.87
   3 ?    3.5   0.1     0.022        59      21      41 .]     122     142 ..     118     142 .. 0.85
   4 ?   -1.6   0.0      0.92   2.5e+03      14      39 ..     162     187 ..     161     189 .. 0.79
   5 !   22.1   0.1   3.1e-08   8.4e-05      13      41 .]     201     230 ..     198     230 .. 0.95
   6 ?    0.8   0.0      0.15   4.2e+02       7      25 ..     238     256 ..     233     259 .. 0.78
   7 ?   -0.9   0.0      0.53   1.4e+03      21      33 ..     297     309 ..     289     310 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0057
                 HHHHHHHHCHHHHHHHHHH CS
   PF00514.18  3 enkqavieaGavppLvqLL 21
                 e ++++ ++G vp+L + L
  MMETSP0890-20130614|40419_1  3 ELRRIIADSGLVPALGHTL 21
                 78999**********8877 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.2
                 HHCHHHHHHHHHHC CS
   PF00514.18  9 ieaGavppLvqLLk 22
                  +aG++ +  +LL+
  MMETSP0890-20130614|40419_1 34 LDAGGLSAIAELLS 47
                 599*********97 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.022
                  HC-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  21 LksgdeevqeeAawALsNLaa 41 
                  L+ +d  v+  A++ ++NL++
  MMETSP0890-20130614|40419_1 122 LTREDAAVRAKACNLVGNLCR 142
                  66689999999*********7 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.92
                  HHHHHHHHC-SSHHHHHHHHHHHHHH CS
   PF00514.18  14 vppLvqLLksgdeevqeeAawALsNL 39 
                  +++ +q+ ++ d  +++ A+ AL+N 
  MMETSP0890-20130614|40419_1 162 LEHIIQCASDHDMATRKFACFALGNA 187
                  56788899988888888888899986 PP

  == domain 5    score: 22.1 bits;  conditional E-value: 3.1e-08
                  HHHHHHHHHC.-SSHHHHHHHHHHHHHHHT CS
   PF00514.18  13 avppLvqLLk.sgdeevqeeAawALsNLaa 41 
                  av pLv+ L+ + de+++ +Aa+AL+NLa+
  MMETSP0890-20130614|40419_1 201 AVAPLVAALRtDHDEKTRANAAGALGNLAR 230
                  899*************************97 PP

  == domain 6    score: 0.8 bits;  conditional E-value: 0.15
                  HHHHCHHHHHHHHHHC-SS CS
   PF00514.18   7 avieaGavppLvqLLksgd 25 
                  ++ ++Ga+++L++   +++
  MMETSP0890-20130614|40419_1 238 ELARQGALQALLDTAANDS 256
                  67899******99777555 PP

  == domain 7    score: -0.9 bits;  conditional E-value: 0.53
                  HC-SSHHHHHHHH CS
   PF00514.18  21 LksgdeevqeeAa 33 
                  L s+d+ ++++A+
  MMETSP0890-20130614|40419_1 297 LASNDKTIVRYAT 309
                  5588999999987 PP

>> PF13513.1  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.2   3.2e+03      43      49 ..      64      72 ..      39      85 .. 0.54
   2 ?    3.2   0.8     0.045   1.2e+02      32      55 .]     117     140 ..      61     140 .. 0.86
   3 !   14.4   0.0   1.4e-05     0.038       2      54 ..     128     186 ..     127     187 .. 0.95
   4 !   23.4   0.1   2.1e-08   5.8e-05      24      55 .]     196     228 ..     190     228 .. 0.92
   5 ?    2.8   0.4     0.062   1.7e+02      25      54 ..     240     270 ..     228     271 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.2
    PF13513.1 43 eV.ReaA.a 49
                 +V  ++A a
  MMETSP0890-20130614|40419_1 64 DVvAGLAnA 72
                 332333333 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.045
    PF13513.1  32 aLlelLeddddeVReaAawALgrl 55 
                  +L   L+ +d+ VR+ A+   g+l
  MMETSP0890-20130614|40419_1 117 WLPSILTREDAAVRAKACNLVGNL 140
                  566777778889******998886 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.4e-05
    PF13513.1   2 rvRraAawaLGr..........laggeprllepavpellpaLlelLedddd.eVReaAawALgr 54 
                  +vR+ A++ +G+          l++++ + +e+ ++ ++++ +     d+d  +R+ A+ ALg+
  MMETSP0890-20130614|40419_1 128 AVRAKACNLVGNlcrhsdafysLLVRRNDAGETTLEHIIQCAS-----DHDmATRKFACFALGN 186
                  79********************999******************.....***777*********8 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 2.1e-08
    PF13513.1  24 pavpellpaLlelLedddd.eVReaAawALgrl 55 
                  +++++++++L+++L++d+d ++R++Aa+ALg+l
  MMETSP0890-20130614|40419_1 196 EYLEAAVAPLVAALRTDHDeKTRANAAGALGNL 228
                  68899**************************97 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.062
    PF13513.1  25 avpellpaLlelL.eddddeVReaAawALgr 54 
                  a + +l+aLl+   +d++d   ++A+ ++g 
  MMETSP0890-20130614|40419_1 240 ARQGALQALLDTAaNDSSDAPLTIALFSCGT 270
                  6677788888555266666779999888886 PP

>> PF12755.2  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.5     4e+03      36      57 ..     122     143 ..     110     156 .. 0.78
   2 !    9.4   0.0   0.00045       1.2      24      54 ..     157     187 ..     138     193 .. 0.87
   3 !    5.9   0.0    0.0053        15      22      56 ..     195     230 ..     190     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.5
    PF12755.2  36 fsDkdsrvRyyacEslyniakv 57 
                  ++ +d+ vR  ac  + n+++ 
  MMETSP0890-20130614|40419_1 122 LTREDAAVRAKACNLVGNLCRH 143
                  5567889999999988888775 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00045
    PF12755.2  24 fleeivkpvlacfsDkdsrvRyyacEslyni 54 
                    e+ ++ +++c sD+d  +R +ac +l n 
  MMETSP0890-20130614|40419_1 157 AGETTLEHIIQCASDHDMATRKFACFALGNA 187
                  5677899******************999775 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0053
    PF12755.2  22 kefleeivkpvlacf.sDkdsrvRyyacEslyniak 56 
                   e+le  v+p++a++ +D+d+++R  a+ +l n+a+
  MMETSP0890-20130614|40419_1 195 YEYLEAAVAPLVAALrTDHDEKTRANAAGALGNLAR 230
                  67999999999988747*************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      311  (0.0227472); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.79
# Mc/sec: 1028.31
//
Query:       MMETSP0890-20130614|40432_1  [L=865]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-39  134.3   0.0    1.1e-38  132.9   0.0    1.7  1  PF03178.10 CPSF A subunit region


Domain annotation for each model (and alignments):
>> PF03178.10  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   8.4e-43   1.1e-38      18     321 .]     514     821 ..     502     821 .. 0.81

  Alignments for each domain:
  == domain 1    score: 132.9 bits;  conditional E-value: 8.4e-43
   PF03178.10  18 lelednEavlsvksvnledset.....ekkellvVGtafllgedpearsGrilvfeidevpetnrklklvhktevkgavtalsef.qgrllvaigqklrvydlgkdksllpkafldkqiyvvslkv.lgnriivgDlmkSvtfleyde..........enkklilfakdtqprwvtaaeflvdgdtilgaDkfgnlfvlrydpease.ssdgdprlevraefhlgdivtsfqkgslvpk.kgekevtsspqvlygtldGsigvlvPllseeeyrflqsLqqqLrkelkhlggldprafRsyysp.kske..vknvlDgdllerfld 321
                   +l+ n ++    + n ++s++     ++++++vVGta+   +d e++ Grilv+e ++v           + ev+gav+ ++++ + r++++++  ++v+d+  +    + a ++  ++++ l++ +++riivgDlm+Sv++le ++             +l ++a+d++++w+ a+     ++  l++++  nl+ l+   +  +  +++d+r++++a +hlgd+ ++f++gs+  + + ++  ++++ +l+g+++G ig+++P +  +++ +l ++q+ ++++ + +ggld+ +fRs+++  k      +++lDgdlle+fld
  MMETSP0890-20130614|40432_1 514 TDLGTNFVASLFSTQNQDISKRapsraGSRSFVVVGTAIPGADDFEPSAGRILVLEETQV---------KWSREVEGAVYDVCALgKKRIACCVNHAVLVFDVSLET---QLAVYEGFVTALRLSApTESRIIVGDLMRSVSVLEMSTatstssetpaLL-NLDEVARDLNAHWTAALYAN--KNETLLSEAGHNLLALHQRAKRRTgPDKEDHRMDTKAAMHLGDYASCFCPGSFSIEsSHDSTKMQQKPLLFGCVSGRIGCILP-VFPDQIIRLDRVQRAIARASNFIGGLDFFQFRSFRTDsK--VddFRGFLDGDLLESFLD 821
                  55655555555555555555558888888***************************9996.........4599************6667****************99...33444333355555552378**************9998877655433222.499**********8776665..3478999999999999885554441555666**********************99866666666699****************.9999999***************************97644..246*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       236  (0.0172616); expected 273.4 (0.02)
Passed bias filter:                      187  (0.0136776); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.38s 00:00:01.50 Elapsed: 00:00:01.51
# Mc/sec: 1372.75
//
Query:       MMETSP0890-20130614|40434_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   12.0   1.2       0.24   10.7   0.8    1.6  1  PF03543.9 Yersinia/Haemophilus virulence surface antigen


Domain annotation for each model (and alignments):
>> PF03543.9  Yersinia/Haemophilus virulence surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   1.8e-05      0.24      39      99 ..     351     409 ..     346     432 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.8e-05
                  HHHHHHHHS---.-------HHHHHHHHHHHHHHHTT-SSHHHHHHH..HHHHH---EE-S CS
    PF03543.9  39 aesrmdrlyaggskgqsraaeiqslysikklqllsqrakaqdqqfqatdtwlkeaglepse 99 
                  a + m++l ++  kg++++aei+++ ++ + +l+s   +a  +++q+++t  +  g +   
  MMETSP0890-20130614|40434_1 351 AAQNMNDLLQDP-KGMPSEAEIDRQLDDLQVALDSGALSA-SDKQQIKETFQQMLGTSDFT 409
                  667899999999.9********************655555.55777777766666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       539  (0.0394236); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:01.24
# Mc/sec: 844.52
//
Query:       MMETSP0890-20130614|40442_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       199  (0.0145553); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.69
# Mc/sec: 538.31
//
Query:       MMETSP0890-20130614|40441_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   42.7  10.1    5.6e-09   35.7   6.3    3.2  2  PF14240.1 YHYH protein


Domain annotation for each model (and alignments):
>> PF14240.1  YHYH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0039        53     142     158 ..     106     121 ..      62     127 .. 0.83
   2 !   35.7   6.3   4.1e-13   5.6e-09      51     162 ..     233     354 ..     175     356 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0039
    PF14240.1 142 tgvtgtYhYhvtdeypy 158
                  t+ +gtY+Y+v+++ p 
  MMETSP0890-20130614|40441_1 106 TN-DGTYRYFVSNAVPA 121
                  33.4********99874 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 4.1e-13
    PF14240.1  51 e.................glDecggHvqptg.aYHYHgapeclleeaeedse...........saliGyaaDGFpIYgekeeegatdassalkklsssgtyvqdyeyvagsgdLDecnGrtgvt.......gtYhYhvtdeypyiirc 162
                  +                   D+  g  +p+g  +HYH+a++cl +  ++d+             +l +ya+DGF IY+  + +ga                            LDec G++g t         YhYh+t   py + c
  MMETSP0890-20130614|40441_1 233 GfvlpcgghvtpptdvldLNDDTIGN-DPSGpYFHYHQAATCLDAFVSADKPvadggnaqtshGNLFAYALDGFGIYTFSDLNGAA-------------------------PILDECGGHFGPTddydlstVSYHYHATPYTPYHLAC 354
                  04446666666666655333444443.4556367*********99877766677777888888********************998.........................79*****************99************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      218  (0.015945); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.72
# Mc/sec: 1337.97
//
Query:       MMETSP0890-20130614|40449_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   33.6   0.0    2.6e-08   33.2   0.0    1.1  1  PF00227.21 Proteasome subunit


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.9e-12   2.6e-08       2     116 ..      18     123 ..      17     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.9e-12
                  HC--BEEEEEETTEEEEEEEECEEETTTEEESSSSSSEEEEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCTTCEEEEEEEETT CS
   PF00227.21   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpfgvslliagvdee 116
                  ++G+ v G+ + dgvv++ad+ a        ++  e  +++ ++i+ + +Gl+a+a+++ +r ++e+++++l+ +r  + +   ++ + ++ a ++rs ++   v++l+ g+de+
  MMETSP0890-20130614|40449_1  18 HTGQVVCGMVFCDGVVIGADENAG--GFW--RE--EIFRELCPNIWGCGVGLQAEADEISRRTQMELKSRYLSIERVTPRQ---DKWTVYAVARLLRSLFHQESVEFLVLGFDEN 123
                  58999***************8888..555..44..46899***********************************999999...9999999999999999999**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      350  (0.0255998); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.74
# Mc/sec: 404.79
//
Query:       MMETSP0890-20130614|40451_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-70  236.8   0.0    2.1e-70  236.6   0.0    1.0  1  PF00248.16 Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> PF00248.16  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   0.0   1.5e-74   2.1e-70       7     281 ..       1     322 [.       1     324 [. 0.93

  Alignments for each domain:
  == domain 1    score: 236.6 bits;  conditional E-value: 1.5e-74
   PF00248.16   7 wslgndeisedealellraal.eaGinlfDtAeyY.......gkgqseellgealkksrkkreeviiatKv.........grispiseglsrenieesleksLkrlgtdylDllllhrpdpslp................sieevlealeelkkeGkirhiGvSnfsveileka...kkkkkvkivvvqveynll.neleeegllelcae.k.gvgiiaysplggGlltgkylseerkedkeprkd..............aqdaleelselakehgvslaqlalryalsrpavgsvipgassieqleenlkalelelseeeiaeidel 281
                  +++g  +++ +e ++ l++a+ e+Gin++DtAe+Y        +g   +++g +lkk   kr+e+++a+Kv          r+ +  ++  +++i+es+++sLkrlgtdy+Dll++h+pd+++p                s e++l al++++++Gk+r+iG+Sn+++  + +      +   ki ++q++y+l+ ++++e+g++e+c   + ++g+ ayspl+gG+ltgky+ ++++++    +               a +a++e++++a + ++sl qlal++++srp   s i+ga+si ql+en++a+++ l++e +++i+ +
  MMETSP0890-20130614|40451_1   1 MTFGK-QNTLEEGVAQLDTAFdEYGINMLDTAEMYpvpteaeTQGATDKIIGTWLKK--RKRDEIVLASKVcgaserinwIRKDKRCPRVCEADIIESVDASLKRLGTDYIDLLQIHWPDRYVPlfgsdaydpsqeresySFEDQLLALQKVISSGKVRYIGISNETPYGITSFsnlAAQHLPKICSIQNSYSLIvRSDVENGIIEACSPrHcNIGFLAYSPLAGGILTGKYNLPQPPKNA---RLnlfpgfmdrftnsrAAQAVNEYQKIATDLDLSLTQLALAFCYSRPWIASTIIGATSIPQLRENIEAFNIVLPDEALSAINGI 322
                  55666.899999*********************************************..*************999888888888888888888***********************************************************************99966666666745555666**************************989*******************988665433...33468***************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       377  (0.0275746); expected 273.4 (0.02)
Passed bias filter:                      368  (0.0269163); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.37s 00:00:00.99 Elapsed: 00:00:00.70
# Mc/sec: 1146.83
//
Query:       MMETSP0890-20130614|40452_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       433  (0.0316706); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.99
# Mc/sec: 1529.80
//
Query:       MMETSP0890-20130614|40458_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0003   19.7   0.0      0.014   14.2   0.0    2.2  1  PF00295.12 Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> PF00295.12  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     1e-06     0.014     149     283 ..       2     158 ..       1     191 [. 0.65

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1e-06
                  S-E-EEEE-EEEESSS-S-EE----........-EEE----EE-----EE-EE-----..--EEEEEE..............EEEEEES-----EEEEETT----EEEEEEEEEEEE------EEEEEE----B----.-----EEEEEEE-EE---- CS
   PF00295.12 149 sskgvtisnstiktgDDCiaigsgsk.......nisitnvtcggGhGiSiGsvggrsde.ntVsnvtv..............kdctvtgtdngvRiKtakgatgtvsnityenielknvanpividqdYedkkpcgkp.tsgvkisditfknitgtva 283
                  ss++v + +  i  gDD i++++g         n++i+n +      +SiGs++ ++     + n t+              +d    g   g+ iKt  g  g v++i+ +ni++     +    + Y+ ++   ++ +    +   ++ +++  + 
  MMETSP0890-20130614|40458_1   2 SSSNVILRGLDIRVGDDAISLKAGLLhsaketyNVQIQNSRLRS-QWLSIGSETAGGIRhIRIANCTFgrtktktgadlysySDIRNMGGPAGIHIKTRIGRGGYVDDIRLSNINVLASDAALRLTTSYPTEGGASTNdNGFTSLGSFVLSDVRCLSG 158
                  68888888999999999999998876666777766666666654.447777777665420233444431111111100000033334455679************************99999999999999666666624445556666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       233  (0.0170421); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.35s 00:00:00.83 Elapsed: 00:00:00.80
# Mc/sec: 626.05
//
Query:       MMETSP0890-20130614|40461_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.92
# Mc/sec: 1172.13
//
Query:       MMETSP0890-20130614|40472_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-22   77.6   9.1    1.8e-17   62.8   1.6    2.4  2  PF12848.2  ABC transporter
    4.2e-20   72.1   1.3    2.2e-14   53.7   0.0    2.7  2  PF00005.22 ABC transporter
      8e-14   52.1   6.5     0.0005   20.0   0.0    3.4  3  PF13304.1  AAA domain
    2.3e-09   36.7   1.8      5e-05   22.5   0.2    3.3  2  PF02463.14 RecF/RecN/SMC N terminal domain
    1.2e-06   28.5   1.0    0.00054   19.9   0.0    2.8  2  PF13401.1  AAA domain
    0.00071   18.9   0.0     0.0015   17.9   0.0    1.5  1  PF13555.1  P-loop containing region of AAA domain
     0.0008   19.6   5.5       0.01   16.0   0.0    2.7  3  PF13476.1  AAA domain
      0.001   18.1   0.0      0.002   17.2   0.0    1.4  1  PF03193.11 Protein of unknown function, DUF258
     0.0012   19.0   2.8     0.0033   17.6   0.0    2.5  2  PF13191.1  AAA ATPase domain
     0.0023   17.4   0.0     0.0057   16.1   0.0    1.7  1  PF13604.1  AAA domain
     0.0023   17.7   0.0     0.0078   16.0   0.0    1.9  1  PF13521.1  AAA domain
     0.0025   18.4   0.8      0.016   15.8   0.0    2.6  3  PF13207.1  AAA domain
     0.0027   17.4   1.1        3.8    7.3   0.3    3.3  2  PF13558.1  Putative exonuclease SbcCD, C subunit
     0.0029   17.9   0.0      0.012   15.9   0.0    2.1  2  PF08477.8  Miro-like protein
      0.005   16.6   0.1       0.39   10.4   0.0    3.1  3  PF13173.1  AAA domain
     0.0082   15.9   0.3      0.039   13.7   0.0    2.1  2  PF13671.1  AAA domain
     0.0086   15.9   0.2       0.04   13.8   0.2    2.3  1  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   14.0   0.0       0.02   13.2   0.0    1.3  1  PF05783.6  Dynein light intermediate chain (DLIC)
      0.015   13.6   0.1      0.015   13.6   0.0    2.5  3  PF13166.1  AAA domain
      0.019   14.3   0.2        3.3    7.0   0.0    2.5  2  PF03029.12 Conserved hypothetical ATP binding protein
      0.026   13.4   0.7        2.1    7.2   0.0    2.9  3  PF13175.1  AAA ATPase domain
      0.038   14.0   0.2       0.43   10.6   0.1    2.5  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
      0.039   13.4   0.0       0.19   11.1   0.0    2.1  2  PF13479.1  AAA domain
      0.041   11.0   0.1      0.041   11.0   0.1    1.8  2  PF12128.3  Protein of unknown function (DUF3584)
      0.042   12.7   0.1        2.7    6.8   0.0    2.3  2  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.069   12.5   0.2       0.15   11.3   0.0    1.6  1  PF01580.13 FtsK/SpoIIIE family
      0.095   12.1   0.0       0.28   10.6   0.0    1.8  1  PF05729.7  NACHT domain
       0.15   11.7   0.8        1.2    8.7   0.0    2.5  3  PF01935.12 Domain of unknown function DUF87
       0.33   11.1   3.2       0.61   10.2   0.0    2.5  2  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF12848.2  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   1.6   3.8e-20   1.8e-17       4      77 ..      68     145 ..      65     155 .. 0.83
   2 !   18.7   0.4   2.2e-06     0.001       1      37 [.     355     391 ..     355     410 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 3.8e-20
    PF12848.2   4 engklteYk.GnYseyleqkeerleqqekayekqqkeikkleefIdrfrakaskakqaqsrekalekm....eriekpe 77 
                  e+g  ++Y   +Ys++l+ k++r+++ e+ay+kqq +i++ ++fI+rfr  +s+a+qa+sre++lek+    + +++p 
  MMETSP0890-20130614|40472_1  68 EDGFTQSYDdCDYSTFLKRKQQRRDAWEAAYKKQQTKINEDKAFINRFRT-GSRAQQAKSRERQLEKLlnspDLVQRPP 145
                  666677775269*************************************8.8****************77666677773 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.2e-06
    PF12848.2   1 velengklteYkGnYseyleqkeerleqqekayekqq 37 
                  + le+g+lt++ G+Y +y++ ++  +e+ e++y  + 
  MMETSP0890-20130614|40472_1 355 WALEDGELTRFDGDYASYMQNRQDLREKVEQRYVDRT 391
                  579*************************999997654 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-05    0.0056      94     118 .]       2      26 ..       2      26 .. 0.96
   2 !   53.7   0.0   4.7e-17   2.2e-14       1     118 []     206     316 ..     206     316 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-05
                  -HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22  94 qkqrvalArallkkpklllLDEPtn 118
                  +k+r+ l ++ll +p++llLDEPtn
  MMETSP0890-20130614|40472_1   2 WKMRIGLSKVLLDEPDILLLDEPTN 26 
                  589*********************8 PP

  == domain 2    score: 53.7 bits;  conditional E-value: 4.7e-17
                  HHHHHHHTTSS------EEE-..--BGGGB-HHHHHEEEE-------...--BHHHHHH----S--.-HHHHHHHHHH---HHHH------------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievdndrkdlesdkleklrigyipqdpllf..peltvrenldmakeekk.tdkrieevlekvgldelldksrvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  STLl+ll+g +kp++g+i++ +  ++++         +y +q+  +     +tv ++++ a   ++ + + ++++l +++++++  +++v++LSgG+k r+al+ ++l+  ++l LDE tn
  MMETSP0890-20130614|40472_1 206 STLLRLLAGIEKPNQGTITYGS--TNVK--------HAYFAQNQADAldLTKTVLQTVNLAPAASEySYEDLRALLGQFNFKGDTVEKKVESLSGGEKGRLALCTMMLQPHNVLFLDEVTN 316
                  9********************3..2233........5788888877766788998888877666556888999999999999966667******************************997 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.6   7.9e-05     0.037     249     303 .]      10      58 ..       4      58 .. 0.79
   2 !   19.7   0.2   1.2e-06   0.00059       3      22 ..     196     215 ..     195     235 .. 0.84
   3 !   20.0   0.0   1.1e-06    0.0005     193     302 ..     244     347 ..     227     348 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.9e-05
    PF13304.1 249 tallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvlld 303
                    ll+ +   ++ll+DEp n+L+ + ++ l ++l+  s     +++++H+ ++ld
  MMETSP0890-20130614|40472_1  10 KVLLDEP---DILLLDEPTNHLDLESVEWLESFLNTQSL---AMVIVSHDREFLD 58 
                  5555555...***************99888888865555...8999999988876 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.2e-06
    PF13304.1   3 viiGpNgsGKSnlLkaldfl 22 
                  +i GpNg+GKS+lL+ l+++
  MMETSP0890-20130614|40472_1 196 AILGPNGAGKSTLLRLLAGI 215
                  799**************998 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.1e-06
    PF13304.1 193 ddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliellkelsnggsQlifTTHSpvll 302
                  d+ +  l++++     s+  +edl+     f++kgd +e    +lS G+k  lal t+ l+ +    vl++DE+ n+L+ ++ ++l e l+     +++l++++H+ +++
  MMETSP0890-20130614|40472_1 244 DLTKTVLQTVNLAPAASEYSYEDLRALLGQFNFKGDTVEKKVESLSGGEKGRLALCTMMLQPH---NVLFLDEVTNHLDISAKETLEEALRFF---DGTLVVVSHDRFFV 347
                  444444444444444444444444444888999999999999999******************...99************8887777666555...56*******98775 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0081       3.8     161     208 ..      18      64 ..      12      73 .. 0.86
   2 !   22.5   0.2   1.1e-07     5e-05      27     205 ..     195     350 ..     182     361 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0081
                  EEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT-.SEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
   PF02463.14 161 lyllDeidaaLDeknvskvaellkeksknaQfivislreemleka.dkl 208
                  + llDe   +LD + v+ + ++l+++s    ++++s+++e+l ++ +k+
  MMETSP0890-20130614|40472_1  18 ILLLDEPTNHLDLESVEWLESFLNTQS--LAMVIVSHDREFLDRVcNKI 64 
                  579*********************999..9999*****99998753554 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.1e-07
                  EEE--------HHHHHHHHHH------.-------TTSS----------EEEEEEEEE----E.......EEEEEEEE----EEEEE---EE-HHHHHHHHHCTT--TTG-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHHHHHHHH-BTBEEEEE-S-HHHHTT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14  27 taivGpNGSGKsnvldAilFvLGeksakklrseklsdlihkskskakvksaeveitfdnedkelvieeeevsitrrvkrkgeseykingkevtkkevaellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskvaellkeksknaQfivislreemleka 205
                   ai+GpNG+GKs +l  +    G        ++  +  i++   + +vk+a+ +     ++++  ++ +++++++       sey  ++ ++   + +    +++ + e+LSgGek  +al+      + +p+ + +lDe+  +LD +  + + e l+       ++v+s+++ +++++
  MMETSP0890-20130614|40472_1 195 VAILGPNGAGKSTLLRLL---AGI-------EKPNQGTITY--GSTNVKHAYFAQ----NQAD-ALDLTKTVLQTVNLAPAASEYSYEDLRALLGQFNFKGDTVEKKVESLSGGEKGRLALCT----MMLQPHNVLFLDEVTNHLDISAKETLEEALRFFD--GTLVVVSHDRFFVSQV 350
                  589999999999998766...554.......2345666766..567777776544....3333.567788888888888888999999999999999888888888999*******9776665....589***********************99999766..6688888888777665 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2     0.019       9.1      89     125 ..      17      53 ..       4      60 .. 0.82
   2 !   19.9   0.0   1.1e-06   0.00054       7     117 ..     195     338 ..     189     342 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.019
    PF13401.1  89 rlliiDEaqr.LseealeelrsllddetgvklvlvGtp 125
                  ++l++DE  + L  e +e+l s+l+ + ++++v+v   
  MMETSP0890-20130614|40472_1  17 DILLLDEPTNhLDLESVEWLESFLN-TQSLAMVIVSHD 53 
                  5999***88879*************.******999766 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.1e-06
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaae.......karvv..fveapastspkellqkllsalglpakg..............rltteellealqealrrrrt..........................rlliiDEaqr.L..s.eealeelrsllddetgv 117
                  +++ G+ G+GK+tllr la   +      +       + + v   + a++++++ +l +++l+ + l + +                              + +t                           +l +DE+ + L  s +e+lee  +++d  t v
  MMETSP0890-20130614|40472_1 195 VAILGPNGAGKSTLLRLLAGIEKP-----NqgtitygS-TNVkhAYFAQNQADALDLTKTVLQTVNLAPAAseysyedlrallgqF-------------NFKGDTvekkveslsggekgrlalctmmlqphNVLFLDEVTNhLdiSaKETLEEALRFFD-GTLV 338
                  6899***************96432.....123466853.44445666777778999999999999999998866644444444441.............333333333555555555567777777889999*******99896636999999999998.6665 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.2e-06    0.0015      16      40 ..     186     209 ..     180     216 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.2e-06
    PF13555.1  16 tveidpkgkntlltGasGsGKSTll 40 
                   +e++ kg+ +++ G++G+GKSTll
  MMETSP0890-20130614|40472_1 186 NAELK-KGDRVAILGPNGAGKSTLL 209
                  55665.6789*************97 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.6     0.049        23     147     191 ..      85     135 ..      29     138 .. 0.62
   2 !   16.0   0.0   2.2e-05      0.01      22      37 ..     195     210 ..     181     215 .. 0.83
   3 ?   -1.6   0.0       5.5   2.6e+03      68      84 ..     381     397 ..     307     416 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.049
    PF13476.1 147 kfklkekkkrleelekeleeledekellek......llqeeekekeleele 191
                  k k++++    ++++k++ ++++ k ++++       +q+++ e++le+l 
  MMETSP0890-20130614|40472_1  85 KRKQQRRDAWEAAYKKQQTKINEDKAFINRfrtgsrAQQAKSRERQLEKLL 135
                  222222223445566666666666666666555655477788888888775 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.2e-05
    PF13476.1  22 tlItGpNGsGKTTild 37 
                  ++I GpNG+GK+T+l 
  MMETSP0890-20130614|40472_1 195 VAILGPNGAGKSTLLR 210
                  68************97 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 5.5
    PF13476.1  68 egkkkayvelsfeddkg 84 
                  e+    yv +++++ k 
  MMETSP0890-20130614|40472_1 381 EKVEQRYVDRTIKNAKF 397
                  12222223333333222 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.3e-06     0.002      24      75 ..     180     232 ..     169     244 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.3e-06
                  TT-HHHHHHCTT.SBEEEE-------HHHHHHH--------S----------- CS
   PF03193.11  24 egleelaellkd.ktsvlvGqSGvGKSsLinallpeldlkvgevseklgrGkh 75 
                  + +++++++lk+ + ++++G+ G+GKS+L+  l++ ++ + g+++  + + kh
  MMETSP0890-20130614|40472_1 180 TLFSNINAELKKgDRVAILGPNGAGKSTLLRLLAGIEKPNQGTITYGSTNVKH 232
                  5577899999998999******************9998888888776666666 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3       1.4   6.8e+02     134     159 ..      18      44 ..      10      50 .. 0.82
   2 !   17.6   0.0     7e-06    0.0033      22     155 ..     192     330 ..     179     340 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.4
    PF13191.1 134 vlvlDD.lqwadresldlLeallerls 159
                  +l+lD+   ++d es+++Le++l+ +s
  MMETSP0890-20130614|40472_1  18 ILLLDEpTNHLDLESVEWLESFLNTQS 44 
                  6889989999*************9954 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 7e-06
    PF13191.1  22 gsplllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn...lpysaiiqa....lrellrqlltelaaelggwreallaalga.......lipelegiiglqalvalldaalartrrpklvlvlDD.lqwadresldlLeall 155
                  g   + ++Gp G GKS+Llr la        ++   ++  ++      +y a  qa    l + + q      a+ ++  e l+a+lg        ++  +e++ g +    +l  ++ + +    vl+lD+   ++d ++ + Le++l
  MMETSP0890-20130614|40472_1 192 GD-RVAILGPNGAGKSTLLRLLAGI------EKPNQGTITYGSTnvkHAYFAQNQAdaldLTKTVLQTVNLAPAASEYSYEDLRALLGQfnfkgdtVEKKVESLSGGEKGRLALCTMMLQPH---NVLFLDEvTNHLDISAKETLEEAL 330
                  34.799*************984444......4444444444444444556666666766744444444444444444555556666666455555544444444444444444444444444...799999863344444444444444 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0057      14     103 ..     189     315 ..     183     344 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-05
    PF13604.1  14 ltsgdrvavvqGpAGtGKttvlkalrealeaagkrvvglAptgkaakvLeee..................................lgiearTiasllerldkeeaegrke.....ldaktllvvDEAg 103
                  l++gdrva++ Gp G+GK+t+l+ l+ + + ++ ++   +++ k a   +++                                  ++ +++T+++ +e+l+ +e+  r +     l+++++l++DE +
  MMETSP0890-20130614|40472_1 189 LKKGDRVAIL-GPNGAGKSTLLRLLAGIEKPNQGTITYGSTNVKHAYFAQNQadaldltktvlqtvnlapaaseysyedlrallgqFNFKGDTVEKKVESLSGGEKG-RLAlctmmLQPHNVLFLDEVT 315
                  68999****9.**************9999886666655555555555555554444444557777777777777777777777666778888888888888886533.333788888888888888865 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.7e-05    0.0078       1      44 [.     194     244 ..     194     274 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.7e-05
    PF13521.1   1 kivitGgpstGKTtlleaLa.....argypvv..pEvarevleeklakgee 44 
                  +++i+G+ ++GK+tll+ La     ++g+ ++  + v   ++ +++a+  +
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLAgiekpNQGTITYgsTNVKHAYFAQNQADALD 244
                  79******************7754444666665666666666666666655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       4.6   2.1e+03      34      45 ..      84     100 ..      26     143 .. 0.57
   2 !   15.8   0.0   3.4e-05     0.016       1      20 [.     194     213 ..     194     285 .. 0.92
   3 ?   -1.0   0.0       5.6   2.7e+03      73     110 ..     363     386 ..     306     410 .. 0.52

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 4.6
                  -.....-GGGS-B---- CS
    PF13207.1  34 l.....reeglkelddg 45 
                  l     r+++++   + 
  MMETSP0890-20130614|40472_1  84 LkrkqqRRDAWEAAYKK 100
                  12233233333333222 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.4e-05
                  EE--B--TT---HHHHHHHH CS
    PF13207.1   1 viaitGppGsGKsTlakeLa 20 
                  ++ai Gp G+GKsTl ++La
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLA 213
                  699****************8 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 5.6
                  HHHHHTTS-----------EEEEE----TTGGTTT-SS CS
    PF13207.1  73 wvidgaleseldlrleeadeiiyldaplpecrkrllkr 110
                    +dg++             + y+   ++  r+++ +r
  MMETSP0890-20130614|40472_1 363 TRFDGDY-------------ASYMQNRQD-LREKVEQR 386
                  2222211.............222222222.33333333 PP

>> PF13558.1  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.018       8.7      63      84 ..      15      36 ..       6      42 .. 0.83
   2 !    7.3   0.3    0.0081       3.8      26      87 ..     281     329 ..     272     334 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.018
    PF13558.1 63 sirlvfLDEAFsklDeeniasl 84
                 ++++++LDE+++ lD e+++ l
  MMETSP0890-20130614|40472_1 15 EPDILLLDEPTNHLDLESVEWL 36
                 6899***********9998765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0081
    PF13558.1  26 lsrrtgtlSGGEkqflvylalaaAlaalyssaegrepsirlvfLDEAFsklDeeniasllel 87 
                  +++++++lSGGEk         +Al  ++ +          +fLDE ++ lD    ++l e+
  MMETSP0890-20130614|40472_1 281 VEKKVESLSGGEK---G----RLALCTMMLQ------PHNVLFLDEVTNHLDISAKETLEEA 329
                  6889999******...2....3333333333......2357899999999986655555544 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       7.1   3.3e+03      63      89 ..      57      83 ..      22     121 .. 0.66
   2 !   15.9   0.0   2.6e-05     0.012       1      26 [.     194     222 ..     194     266 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 7.1
    PF08477.8 63 lkkehelllkkadaillvydltdeesl 89
                 l++  ++++ + d++   yd +d++++
  MMETSP0890-20130614|40472_1 57 LDRVCNKIVDTEDGFTQSYDDCDYSTF 83
                 344344445555555555665665555 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.6e-05
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp...k 26 
                  +v+++G  g+GKs+ll+ l+g e+p   +
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLAGIEKPnqgT 222
                  89***********************3221 PP

>> PF13173.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       5.2   2.4e+03      61      87 ..      15      43 ..       6      64 .. 0.65
   2 !   10.4   0.0   0.00083      0.39       4      34 ..     194     225 ..     191     264 .. 0.69
   3 ?    2.4   0.0      0.25   1.2e+02      60      74 ..     304     324 ..     271     354 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5.2
    PF13173.1 61 kkkylflDEiqevpewe..dalkslvddg 87
                 +  +l+lDE ++  ++e  ++l s+++++
  MMETSP0890-20130614|40472_1 15 EPDILLLDEPTNHLDLEsvEWLESFLNTQ 43
                 56789999988876655114566666655 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00083
    PF13173.1   4 ilvitGpRrvGKttllkqlakell.keesily 34 
                   ++i Gp ++GK+tll+ la  ++ ++  i y
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLAGIEKpNQGTITY 225
                  589*************9998776644444444 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.25
    PF13173.1  60 ekkkylflDEiqev......p 74 
                  + +++lflDE+++       +
  MMETSP0890-20130614|40472_1 304 QPHNVLFLDEVTNHldisakE 324
                  34689******9874443333 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.2     1e+03     106     120 ..      78      92 ..      35     131 .. 0.58
   2 !   13.7   0.0   8.2e-05     0.039       2      54 ..     195     252 ..     195     289 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.2
    PF13671.1 106 vpeetlreRlakRer 120
                  ++ +t  +R ++R++
  MMETSP0890-20130614|40472_1  78 CDYSTFLKRKQQRRD 92 
                  333333333333333 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 8.2e-05
    PF13671.1   2 vllvGlpGsGKstlaerllkklg....yvrlsqdtlrkrlfgtdqqsktdytr.vlkr 54 
                  v + G+ G+GKstl++ l+   +    +++  + +++ + f+++q +  d t+ vl+ 
  MMETSP0890-20130614|40472_1 195 VAILGPNGAGKSTLLRLLAGIEKpnqgTITYGSTNVKHAYFAQNQADALDLTKtVLQT 252
                  5678**********99995433333579999999999999986666655555423333 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   8.4e-05      0.04       1      24 [.     194     217 ..     194     365 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.4e-05
                  EEEEE--TT---HHHHHHHHCSTC CS
   PF01926.18   1 evaivGrpNvGKStLinaLtgeka 24 
                  +vai+G   +GKStL++ L g ++
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLAGIEK 217
                  69*****************97332 PP

>> PF05783.6  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.3e-05      0.02      41      87 ..     188     233 ..     181     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-05
    PF05783.6  41 klPsgksvlvlGedgsGkttliaklqGveenkkGrGleylyldvkde 87 
                   l  g  v +lG +g+Gk+tl+  l G+e++++G  + y   +vk  
  MMETSP0890-20130614|40472_1 188 ELKKGDRVAILGPNGAGKSTLLRLLAGIEKPNQGT-ITYGSTNVKHA 233
                  6778999*************************996.66666666654 PP

>> PF13166.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.5      0.53   2.5e+02     110     151 ..      92     133 ..      54     149 .. 0.56
   2 ?   13.6   0.0   3.2e-05     0.015       9      43 ..     186     219 ..     179     247 .. 0.73
   3 ?   -2.7   0.1       2.8   1.3e+03     387     411 ..     370     394 ..     345     411 .. 0.48

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.53
    PF13166.1 110 ekleelekelekkekekekakaklkekawkklakkkeselke 151
                  +  e+++k+ ++k +e+++ ++ +++  + + ak++e++l++
  MMETSP0890-20130614|40472_1  92 DAWEAAYKKQQTKINEDKAFINRFRTGSRAQQAKSRERQLEK 133
                  122223333333333333444444444444444444444433 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.2e-05
    PF13166.1   9 geelddfkkvNlIYGrNGsGKtTlSrllrslelke 43 
                  ++el++  +v  I G+NG+GK+Tl rll+ +e+ +
  MMETSP0890-20130614|40472_1 186 NAELKKGDRVA-ILGPNGAGKSTLLRLLAGIEKPN 219
                  66677666665.56****************98532 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 2.8
    PF13166.1 387 dnlkeeknkakkklwlhlvaelked 411
                  + + ++++++++k+++ +v +  ++
  MMETSP0890-20130614|40472_1 370 ASYMQNRQDLREKVEQRYVDRTIKN 394
                  3344444444444444444333222 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.033        16       1      19 [.     197     215 ..     197     224 .. 0.84
   2 ?    7.0   0.0     0.007       3.3      12      42 ..     235     265 ..     232     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.033
   PF03029.12   1 vvGpaGsGKttfvgalsei 19 
                  ++Gp G+GK+t+++ l+ i
  MMETSP0890-20130614|40472_1 197 ILGPNGAGKSTLLRLLAGI 215
                  68**********9987655 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.007
   PF03029.12  12 fvgalseilelskrsvavvNLDPAaeelpYe 42 
                  f ++ ++ l+l+k+ +++vNL PAa+e +Ye
  MMETSP0890-20130614|40472_1 235 FAQNQADALDLTKTVLQTVNLAPAASEYSYE 265
                  556667788899999*************997 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.054        26     365     394 ..      14      40 ..       2      56 .. 0.72
   2 ?    7.2   0.0    0.0044       2.1      25      43 ..     186     225 ..     166     287 .. 0.74
   3 ?   -2.5   0.0       3.7   1.8e+03     370     392 ..     306     328 ..     302     337 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.054
    PF13175.1 365 skslnknIlliDEPeahlhptlqkellefL 394
                  + ++   Ill+DEP  hl+    + l  fL
  MMETSP0890-20130614|40472_1  14 DEPD---ILLLDEPTNHLDLESVEWLESFL 40 
                  3334...***********977666555555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0044
    PF13175.1  25 n.........viiGeNgsGKttILeal............e 43 
                  n          i G Ng+GK+t+L  l             
  MMETSP0890-20130614|40472_1 186 NaelkkgdrvAILGPNGAGKSTLLRLLagiekpnqgtitY 225
                  444445555689************9998854444443331 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 3.7
    PF13175.1 370 knIlliDEPeahlhptlqkelle 392
                  +n+l +DE   hl++++++ l e
  MMETSP0890-20130614|40472_1 306 HNVLFLDEVTNHLDISAKETLEE 328
                  469999********999987755 PP

>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00091      0.43       3     125 ..     197     366 ..     195     371 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00091
                  EE-------HHHHHHHHHH............CTHE..............EEEEECCSSSSS..........................................T-HHHHHHHHHHHHHHHHTS........-S.EEEEEETGGGC-HHHSS..TTHCHHHHHHHHHHHHHTTTT..S.TEEEEEE-SSGGGS-HHHHHTTSC CS
   PF00004.24   3 lyGppGtGKTllakavake............lgve..............fleisgsellsk..........................................yvgesekkirelfkeakeka........kp.silfiDEidalaksrsgseseeeervvnqLlteldgvkkk..eskvivigatnrpdkldpallrgRfd 125
                  + Gp G GK++l + +a              +  +                                                                    + g             ++ +        +p  +lf+DE+ +    +       +++++++ l+++dg      +++++v  ++n+++ l++  l  Rfd
  MMETSP0890-20130614|40472_1 197 ILGPNGAGKSTLLRLLAGIekpnqgtitygsT--NvkhayfaqnqadalD----------LtktvlqtvnlapaaseysyedlrallgqfnfkgdtvekkvesLSGG------------EKGRlalctmmlQPhNVLFLDEVTNHLDIS-------AKETLEEALRFFDGTLVVvsHDRFFVSQVANTIWALEDGEL-TRFD 366
                  78***************995554444333321..0223333322333330..........13356666666666666666666666666663333222223322222............222234445555555899999999888888.......56666666666666554444566777777777777777666.6666 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0004      0.19       5      83 ..     194     320 ..     190     333 .. 0.67
   2 ?   -1.5   0.0         3   1.4e+03     141     163 ..     366     388 ..     356     391 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0004
    PF13479.1   5 kvliYGkpGiGKTslaktl...pktlfldleagakavkdlk....rgdsvdvr................swqdlre.........................alkeleedlaeydtlviDsitklerl 83 
                  +v+i+G+ G+GK++l++ l   +k+    +  g+  vk +     ++d++d                  s++dlr                           l++   +l++ ++l++D +t+  ++
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLagiEKPNQGTITYGSTNVKHAYfaqnQADALDLTktvlqtvnlapaaseySYEDLRAllgqfnfkgdtvekkveslsggekgRLALCTMMLQPHNVLFLDEVTNHLDI 320
                  799*************999887777776666776666655555555555555566666666666666666666666777777777777777777777777755555566777777777777766665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3
    PF13479.1 141 dedggaytrfelklgkkvanelp 163
                  d d+  y++ +++l++kv ++++
  MMETSP0890-20130614|40472_1 366 DGDYASYMQNRQDLREKVEQRYV 388
                  468899***********999876 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.59   2.8e+02     494     525 ..      95     126 ..      64     141 .. 0.42
   2 ?   11.0   0.1   8.8e-05     0.041      12      37 ..     187     212 ..     185     213 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.59
    PF12128.3 494 alqseeeqlrkkrdealealqkaerrleelre 525
                  ++  +++q + + d+a  ++ +   r+++ ++
  MMETSP0890-20130614|40472_1  95 EAAYKKQQTKINEDKAFINRFRTGSRAQQAKS 126
                  11112222222222222222222222222222 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.8e-05
    PF12128.3  12 neldldghtnieGtNgaGKTtLlrLl 37 
                  +el+  +++ i G NgaGK tLlrLl
  MMETSP0890-20130614|40472_1 187 AELKKGDRVAILGPNGAGKSTLLRLL 212
                  589999*******************8 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.061        29      50      71 ..     192     213 ..     181     230 .. 0.85
   2 ?    6.8   0.0    0.0056       2.7      90     128 ..     294     333 ..     283     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.061
    PF05496.7  50 ldhvllyGpPGlGkttlakiia 71 
                   d v + Gp G Gk tl +++a
  MMETSP0890-20130614|40472_1 192 GDRVAILGPNGAGKSTLLRLLA 213
                  59999************99887 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0056
    PF05496.7  90 gdlaalltnleekdvlfideih.rlsraveevlysamedf 128
                  g la   + l++++vlf+de+   l+ +++e l  a+  f
  MMETSP0890-20130614|40472_1 294 GRLALCTMMLQPHNVLFLDEVTnHLDISAKETLEEALRFF 333
                  667777789***********95269999999999998765 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.15      10      58 ..     145     212 ..     139     214 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00032
   PF01580.13  10 parkeysrltialgkeg.sgkplvadlvkap..................hlLiaGatgsGKStflrtL 58 
                  p+rk+  r+  + ++++  g ++++d v++                   +++i+G +g+GKSt lr L
  MMETSP0890-20130614|40472_1 145 PTRKKGLRIRFPDPPRIgAGGVVSCDEVGHGygdrtlfsninaelkkgdRVAILGPNGAGKSTLLRLL 212
                  5555556666666666666666666666666666666666666666666**************99865 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00059      0.28       2      21 ..     194     213 ..     193     222 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00059
    PF05729.7   2 tvilqGeaGsGKTtLlqkla 21 
                   v++ G++G GK+tLl+ la
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLLA 213
                  699*************9776 PP

>> PF01935.12  Domain of unknown function DUF87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1         1   4.9e+02     125     180 ..      92     137 ..      33     151 .. 0.51
   2 ?    8.7   0.0    0.0025       1.2      25      43 ..     194     212 ..     183     220 .. 0.92
   3 ?   -2.4   0.0       6.6   3.1e+03     114     124 ..     379     389 ..     309     410 .. 0.57

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1
   PF01935.12 125 ealeqakakeekeklssdepveklleelkkekeelrklknqairrlldklerllrk 180
                  +a+e a  k++++k++ d  +   +         +  ++ q++++ +++le+ll++
  MMETSP0890-20130614|40472_1  92 DAWEAAY-KKQQTKINEDKAFINRF---------RTGSRAQQAKSRERQLEKLLNS 137
                  2222222.22222222222222111.........1223333333334444444444 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0025
   PF01935.12  25 HlAilgsTGsGKSntvavL 43 
                  ++Ailg  G+GKS++ ++L
  MMETSP0890-20130614|40472_1 194 RVAILGPNGAGKSTLLRLL 212
                  79**************998 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 6.6
   PF01935.12 114 paaeaqrsvle 124
                    +++++++++
  MMETSP0890-20130614|40472_1 379 LREKVEQRYVD 389
                  11122333333 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1         1   4.7e+02      51     117 ..      28      95 ..       8     111 .. 0.67
   2 ?   10.2   0.0    0.0013      0.61       1      20 [.     195     214 ..     195     254 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 1
    PF13238.1  51 ldedkldelldkleenes..elaegenviidghlaeleledlkdlklvvLradpeelarRlekRgrkee 117
                  ld + ++ l + l+ ++    ++ +++  +d ++  + + ++ +    + ++d  + ++R ++R+   e
  MMETSP0890-20130614|40472_1  28 LDLESVEWLESFLNTQSLamVIVSHDREFLDRVCNKIVDTEDGFTQ-SYDDCDYSTFLKRKQQRRDAWE 95 
                  5555555555555554446666777777788888888776666666.8889999999999999885554 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0013
    PF13238.1   1 IlitGtpGvGKtTlakeLae 20 
                  ++i G+ G+GK+Tl+++La 
  MMETSP0890-20130614|40472_1 195 VAILGPNGAGKSTLLRLLAG 214
                  6899**************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       691  (0.0505413); expected 273.4 (0.02)
Passed bias filter:                      414  (0.0302809); expected 273.4 (0.02)
Passed Vit filter:                        85  (0.00621709); expected 13.7 (0.001)
Passed Fwd filter:                        29  (0.00212112); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:01.24
# Mc/sec: 834.86
//
Query:       MMETSP0890-20130614|40485_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-32  110.6   0.4    8.9e-32  110.3   0.3    1.0  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.3   6.5e-36   8.9e-32       8     155 ..      20     163 ..      15     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 6.5e-36
                  XXXXXXXXXXXXX.---...-TTTTT--------TTT------------------S--TT--..STT-------S-TT.THHHH---HHHHHHHHTT------------------------..-----------STTT----TTTTT------- CS
   PF00504.16   8 slpgdlgfDplglskdp...tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa.waeagglslptllalqillligflelareqelkapesegsekraypGglgfdplgla..kdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  + ++  gfDpl+ls+ +   +l+rlre+El+HGRvAM+a+lG+lv+ ++  l++ s ++++++  ++ag  +l  ++ +qi+ ++g +e+  ++  k+       +++ pG++      l   +d+e++ ++++kE++nGRlAM+af+gfv+q+
  MMETSP0890-20130614|40485_1  20 ETAPLNGFDPLKLSAGKtdaQLARLRECELKHGRVAMAAMLGMLVEPVVHPLAK-SCYVTQVTdPFKAG-WELNFAGKMQIIGFCGGVEFLAWKM-KE------GDKYRPGDV-LGAAYLVpdEDAEAWISYQNKELNNGRLAMMAFTGFVAQY 163
                  5555668*******766677***************************9988765.44444444466666.347778999***********87755.33......46789**96.333333357*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.36s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 680.87
//
Query:       MMETSP0890-20130614|40490_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      327  (0.0239175); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 437.23
//
Query:       MMETSP0890-20130614|40502_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      291  (0.0212844); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.51s 00:00:00.77 Elapsed: 00:00:01.88
# Mc/sec: 160.61
//
Query:       MMETSP0890-20130614|40506_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-14   53.9   0.0      9e-14   51.6   0.0    2.1  2  PF00581.15 Rhodanese-like domain
     0.0019   18.4   0.0     0.0045   17.1   0.0    1.8  1  PF13238.1  AAA domain
     0.0043   17.0   0.0     0.0092   15.9   0.0    1.5  1  PF13401.1  AAA domain
     0.0065   17.1   0.1      0.029   15.0   0.0    2.3  2  PF13207.1  AAA domain
     0.0088   16.3   0.0       0.02   15.1   0.0    1.6  1  PF13191.1  AAA ATPase domain
  ------ inclusion threshold ------
      0.018   14.0   0.0      0.034   13.1   0.0    1.4  1  PF06414.7  Zeta toxin
      0.061   12.7   0.0        0.1   12.0   0.0    1.4  1  PF13604.1  AAA domain
      0.073   12.1   0.0       0.13   11.3   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
      0.082   11.6   0.0       0.13   11.0   0.0    1.2  1  PF00437.15 Type II/IV secretion system protein
       0.11   11.0   0.4        0.5    8.8   0.1    1.9  2  PF02456.10 Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> PF00581.15  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   6.6e-17     9e-14       8     111 ..       9     122 ..       2     123 .. 0.79
   2 ?   -1.4   0.0         2   2.7e+03      45      80 ..     223     258 ..     210     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 6.6e-17
   PF00581.15   8 llekekvvllDvRspeeyekghIpgAvnvpldsl..................ypkrdlpfkdklaeeleesgkkldkkktvvvyc.ssgnrsggaaalllalilkelgyknvyvLdGGfeawk 111
                  l  k++++ +DvRsp e+e+ghIpgA nvpl s                   ++ + ++  d+  ++l++ +k  ++ ++v ++c ++g rsg +a+l     l++ g  +vy+L+GG+ ++ 
  MMETSP0890-20130614|40506_1   9 LV-KDGMRCVDVRSPGEFERGHIPGATNVPLFSNeerasvgrcyknagrdaaMALGMSKVADHGIDNLAQDAK--GEVNKVCLHCwRGGLRSGAMAWL-----LRRRGV-EVYCLRGGYRSFR 122
                  45.7999************************999***999999887776644444444444444444555555..677789****6699999999999.....9999*9.9********9986 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2
   PF00581.15  45 rdlpfkdklaeeleesgkkldkkktvvvycssgnrs 80 
                  +++p+ + +++ l++++ +ld+++++ v ++ g+ +
  MMETSP0890-20130614|40506_1 223 SKQPTNEMFENLLAMAWFSLDHSRRIWVEDEEGHVG 258
                  567788889999999999999999998877766655 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.3e-06    0.0045       1      55 [.     181     234 ..     181     306 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.3e-06
    PF13238.1   1 IlitGtpGvGKtTlakeLaerlgdvlrdlakengleeevddkidtkeskeldedk 55 
                  I+++G +GvGKt +++ La+  g+ + dl +      + + ++ + + +e+ e+ 
  MMETSP0890-20130614|40506_1 181 IILSGRTGVGKTRVLQQLANL-GEQILDLEFLASHRGSAFGYVSKQPTNEMFENL 234
                  99****************998.565555544333333333333335555555554 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.7e-06    0.0092       3      27 ..     177     201 ..     173     244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.7e-06
    PF13401.1   3 sagilvvtGesGvGKTtllrrlarq 27 
                  s ++++++G +GvGKT++l++la+ 
  MMETSP0890-20130614|40506_1 177 SPQLIILSGRTGVGKTRVLQQLANL 201
                  56899*****************995 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.8   3.8e+03      58     100 ..     122     161 ..      88     173 .. 0.54
   2 !   15.0   0.0   2.2e-05     0.029       1      30 [.     180     208 ..     180     329 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.8
                  HHHHHHH....H..HHHHHH..TTS.-----.------...EEEEE---- CS
    PF13207.1  58 aaildglaakkdtlswvidg..ale.seldl.rleead...eiiyldapl 100
                  + ++ g+        w i+g    + s+ ++ r e ++   e+i+ + p+
  MMETSP0890-20130614|40506_1 122 RRWARGI--------WSIQGefI-QdSTEEMeREE-DFsleECIDTVQPR 161
                  4555555........66666431.22333342333.22244555555555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.2e-05
                  EE--B--TT---HHHHHHHHHHSTEEEEEG CS
    PF13207.1   1 viaitGppGsGKsTlakeLaerlglpvlsl 30 
                  +i+++G +G+GK+ + ++La+ lg ++l+l
  MMETSP0890-20130614|40506_1 180 LIILSGRTGVGKTRVLQQLAN-LGEQILDL 208
                  59*****************99.57665555 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05      0.02      22      44 ..     176     199 ..     167     235 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.5e-05
    PF13191.1  22 gsp.lllvtGpsGiGKSsLlrela 44 
                  +sp l++++G  G+GK+++l++la
  MMETSP0890-20130614|40506_1 176 SSPqLIILSGRTGVGKTRVLQQLA 199
                  445599****************44 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-05     0.034      11      38 ..     172     200 ..     163     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.5e-05
    PF06414.7  11 peq.ekpkavllgGqpGAGKtslaellle 38 
                  +++ ++p++++l G +G GKt+++++l +
  MMETSP0890-20130614|40506_1 172 KKTcSSPQLIILSGRTGVGKTRVLQQLAN 200
                  34559*******************99876 PP

>> PF13604.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.6e-05       0.1      10      44 ..     171     204 ..     162     231 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.6e-05
    PF13604.1  10 veavltsgdrvavvqGpAGtGKttvlkalrealea 44 
                  ++++ +s+ ++ +++G+ G GKt vl++l+++ e+
  MMETSP0890-20130614|40506_1 171 IKKT-CSSPQLIILSGRTGVGKTRVLQQLANLGEQ 204
                  4555.55558999***************9987665 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.5e-05      0.13      23      57 ..     165     200 ..     146     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.5e-05
                  HTT-HHHHHHCTT.SBEEEE-------HHHHHHH-- CS
   PF03193.11  23 kegleelaellkd.ktsvlvGqSGvGKSsLinallp 57 
                  +e+  ++++++++ ++++l G++GvGK+ ++++l++
  MMETSP0890-20130614|40506_1 165 QEKKVHIKKTCSSpQLIILSGRTGVGKTRVLQQLAN 200
                  55566788888888****************999976 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.5e-05      0.13     115     148 ..     165     198 ..     138     207 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.5e-05
   PF00437.15 115 kklaevlrqavqargnilvsGgTgsGKttllnal 148
                  ++ +  +++  ++ ++i++sG Tg GKt +l+ l
  MMETSP0890-20130614|40506_1 165 QEKKVHIKKTCSSPQLIILSGRTGVGKTRVLQQL 198
                  555556788888899*************999765 PP

>> PF02456.10  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.22     3e+02      85     107 ..     176     198 ..     151     206 .. 0.85
   2 ?    8.8   0.1   0.00036       0.5     263     300 ..     259     296 ..     256     313 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.22
   PF02456.10  85 kqPvigvvygptgsGksqllrnl 107
                  + P + +++g tg Gk+++l++l
  MMETSP0890-20130614|40506_1 176 SSPQLIILSGRTGVGKTRVLQQL 198
                  67899999**********99987 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00036
   PF02456.10 263 klHilspkiqpsqlsrFintyakglskelvvllkdife 300
                  k++i sp  +++q s++i   + ++ + +++ll d++ 
  MMETSP0890-20130614|40506_1 259 KCYIPSPLYSQMQSSKYIIRLTASMHTRVSLLLSDYLL 296
                  999********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       456  (0.0333528); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        80  (0.00585138); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.75u 0.42s 00:00:01.17 Elapsed: 00:00:00.98
# Mc/sec: 978.10
//
Query:       MMETSP0890-20130614|40507_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-09   34.9   0.0    1.7e-08   34.1   0.0    1.4  1  PF02212.13 Dynamin GTPase effector domain
    6.1e-08   31.6   0.0    9.9e-08   30.9   0.0    1.3  1  PF01031.15 Dynamin central region
    4.2e-07   29.9   0.1    7.9e-07   29.0   0.0    1.5  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
    7.3e-07   28.8   0.0    2.2e-06   27.3   0.0    1.8  1  PF13180.1  PDZ domain
  ------ inclusion threshold ------
       0.34   10.8   1.7         37    4.3   0.1    3.2  3  PF14144.1  Seed dormancy control


Domain annotation for each model (and alignments):
>> PF02212.13  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   6.2e-12   1.7e-08       3      90 ..     164     251 ..     162     253 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 6.2e-12
   PF02212.13   3 aieieeiklllksYfdivrkniedqvPkaImhflvnetkeelqnellrkLykeelleelLqEddevaekRkelkerlevLkqAlrild 90 
                  a+++e +   l++Y++ ++k+  d+  +aI   ++ +++ +lq++l+++  ++++l+  + Ed+++++kRkel+ + ++L +A   ++
  MMETSP0890-20130614|40507_1 164 AANAEDLSAILQAYWTLASKRYVDNACMAIDDRILGTLCPKLQEALFHHAHDNDKLDAFFVEDPAIVAKRKELEATKDRLAKATLAMS 251
                  6678899999************************************************************************986665 PP

>> PF01031.15  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.6e-11   9.9e-08     173     269 ..       5     101 ..       2     116 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 3.6e-11
                  HHHHHH-----------TTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH CS
   PF01031.15 173 eirtairnsrGrelplFvpekaFellvkkqikrLeepalkcvelvyeelekivkkvlskelkrfpnLkeeikevvedllreqleeteklvenlidme 269
                  +  + +++ rGrelp+F++ ++F + +++ i+  + p  +++ +      ++v ++l++   ++p L+++  ++++++l++ ++e+ +l+ +l+  e
  MMETSP0890-20130614|40507_1   5 DLAKKMESLRGRELPGFMSAQSFYMFIQDFIEAWRGPTRAACGQTRALAAEVVADLLHQIAPSYPVLRDAFDTAANSILEQTEDEAITLIDSLLLRE 101
                  667788999*********************************************************************************9987666 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.9e-10   7.9e-07       3      80 ..     281     354 ..     278     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.9e-10
                  EEETTTTSH---EEEESSTTSSSSEEEEESTTT.HHTTTTSBSTTCEEEEETTEBGTTSHHHHHHHHHHTHHSEEEEEE CS
   PF00595.19   3 slekekrgglGfslkggsdkrdkgifvsevvpg.gaaeagglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLti 80 
                  +++    +glG++l+ +++     ++v       ++a+ +g++ GD ++++N ++v+++ ++  ++   +k ++++L++
  MMETSP0890-20130614|40507_1 281 TIPS-ALQGLGLQLADEQN----RVVVRGFRDAnSPAQDAGIHLGDTLVQINERPVTSFDNAISQLKALNKQDPIHLVL 354
                  4555.889*******9888....67777777777************************966666666666666999986 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.9e-10   2.2e-06       2      71 ..     288     356 ..     287     356 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.9e-10
    PF13180.1   2 diGvsvsqlentrgvlvvs.VkessPaakaglkpGDiilkvdgkkvksltdlkslllkkkpGdtvkltvlR 71 
                  ++G ++ +++n  +v+v    + +sPa++ag++ GD+++++++++v+s ++ +s+l    + d ++l + R
  MMETSP0890-20130614|40507_1 288 GLGLQLADEQN--RVVVRGfRDANSPAQDAGIHLGDTLVQINERPVTSFDNAISQLKALNKQDPIHLVLRR 356
                  68899999998..8777778899*********************************999999998887766 PP

>> PF14144.1  Seed dormancy control
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.013        37      21      55 ..     145     179 ..     125     184 .. 0.85
   2 ?    0.7   0.1      0.18     5e+02       3      44 ..     202     246 ..     200     251 .. 0.68
   3 ?    2.8   0.0      0.04   1.1e+02      18      50 ..     321     353 ..     308     355 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.013
    PF14144.1  21 rslvdkvlahyeeyyelksaaakadvfhllspsWk 55 
                  + +++++   y++ ++  saa+ +d++++l   W+
  MMETSP0890-20130614|40507_1 145 QHVINALRTWYQNSHSVSSAANAEDLSAILQAYWT 179
                  56677777889***********************8 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.18
    PF14144.1   3 laeLraalnshaksddeLrslvd...kvlahyeeyyelksaaaka 44 
                   ++L++al +ha+++d+L +++    +++a+ +e+  +k+++aka
  MMETSP0890-20130614|40507_1 202 CPKLQEALFHHAHDNDKLDAFFVedpAIVAKRKELEATKDRLAKA 246
                  678999999999999999886531224666666666666666665 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.04
    PF14144.1  18 deLrslvdkvlahyeeyyelksaaakadvfhll 50 
                  d L ++ ++ +  +++ ++  +a++k+d++hl+
  MMETSP0890-20130614|40507_1 321 DTLVQINERPVTSFDNAISQLKALNKQDPIHLV 353
                  567888899999******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       414  (0.0302809); expected 273.4 (0.02)
Passed bias filter:                      296  (0.0216501); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.43s 00:00:01.09 Elapsed: 00:00:00.81
# Mc/sec: 1056.17
//
Query:       MMETSP0890-20130614|40512_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-09   36.6   0.0    4.2e-08   32.4   0.0    2.0  1  PF01715.12 IPP transferase


Domain annotation for each model (and alignments):
>> PF01715.12  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   3.1e-12   4.2e-08     178     251 ..       1      93 [.       1      95 [. 0.86

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 3.1e-12
                  HC---HHHHHHHHC--.--TTSTTTT----HHHHHHH--..................---HHHHHH---HHHHHHHHHHHHHH------EEEE CS
   PF01715.12 178 lesGlveEvkaLlakg.leedltaikaiGykevleyleg..................eltleeaieriikatrqyAkRQltwlrkksevhwld 251
                  le+Glv Ev +L+  g l  ++ a kaiGy++ l++l+                   e  + +   + ++atr yA  Q++w r+++++  +d
  MMETSP0890-20130614|40512_1   1 LERGLVTEVAHLFVDGqLPPNSSAAKAIGYRQTLDFLQDqatalfqdhiesidlqhfEEPYLDFLRKFATATRNYAAAQIKWYRRDPDFAVID 93 
                  799**********99989********************9889999998887766543333667888999****************99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       383  (0.0280135); expected 273.4 (0.02)
Passed bias filter:                      338  (0.0247221); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.36s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 479.27
//
Query:       MMETSP0890-20130614|40518_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.2   0.1       0.24   11.3   0.0    1.4  1  PF14035.1 YlzJ-like protein


Domain annotation for each model (and alignments):
>> PF14035.1  YlzJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.24      47      66 .]      24      45 ..      22      45 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.7e-05
    PF14035.1 47 lStdPndYLnpeya..PGqvik 66
                 +S+dP d+L p y+  PG++i+
  MMETSP0890-20130614|40518_1 24 ISPDPRDFLLPAYSlnPGTIIR 45
                 8**********98544999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       195  (0.0142627); expected 273.4 (0.02)
Passed bias filter:                      192  (0.0140433); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.30s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 269.06
//
Query:       MMETSP0890-20130614|40516_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-09   37.2   2.8    4.5e-09   36.0   1.9    1.7  1  PF13183.1  4Fe-4S dicluster domain
    4.9e-08   33.0   3.9    1.2e-07   31.8   2.7    1.7  1  PF13534.1  4Fe-4S dicluster domain
    9.1e-07   29.0   3.0    9.1e-07   29.0   2.1    2.3  2  PF12838.2  4Fe-4S dicluster domain
    3.4e-06   26.6   2.8    3.4e-06   26.6   2.0    1.9  2  PF13237.1  4Fe-4S dicluster domain
    4.9e-05   23.5   6.3     0.0055   16.9   0.1    2.8  2  PF13746.1  4Fe-4S dicluster domain
    0.00015   22.3   2.9    0.00052   20.5   2.0    2.0  1  PF13484.1  4Fe-4S double cluster binding domain
    0.00033   20.0   9.7     0.0085   15.5   1.6    2.5  2  PF00037.22 4Fe-4S binding domain
     0.0013   18.4   1.4     0.0013   18.4   1.0    2.7  2  PF12797.2  4Fe-4S binding domain
     0.0098   16.0   8.2       0.14   12.3   5.9    2.5  2  PF13187.1  4Fe-4S dicluster domain
  ------ inclusion threshold ------
       0.31   11.3   9.5       0.17   12.1   2.4    2.8  2  PF12800.2  4Fe-4S binding domain
        1.8    9.2  17.6        1.1    9.8   0.7    3.4  3  PF12798.2  4Fe-4S binding domain
        1.8    8.4  11.2      0.077   12.7   1.8    2.5  2  PF12837.2  4Fe-4S binding domain
        5.7    7.2   9.6        4.1    7.7   1.5    2.5  2  PF13370.1  4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> PF13183.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   1.9   4.3e-12   4.5e-09       3      57 .]       7      87 ..       5      87 .. 0.64

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 4.3e-12
    PF13183.1  3 saCieCgrCtnvCp....................viralarelhsardglta....veeeea.............wsCttCgaCeevCPvgi 57
                 ++CieCg C+++Cp                    +          + dg++     +    +             + C + g+C+e+CPv+i
  MMETSP0890-20130614|40516_1  7 DHCIECGFCESNCPsrdaaltprqritvwreinrL-------ARLEVDGAISstdqE----RlhamrkeyeyaglDMCAADGMCQEKCPVKI 87
                 79************888877777777744443331.......222222222222220....12223333456799***************98 PP

>> PF13534.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   2.7   1.1e-10   1.2e-07       1      60 [.       8      87 ..       8      88 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.1e-10
    PF13534.1  1 rCiqCgyCvpvCpsyla..ygeepkkllraaea..................geleeaeeeeaaslCteCgeCeekCpqgl 60
                 +Ci+Cg+C+ +Cps  a  ++ ++ ++ r+++                   + +++ +e+  ++ C+  g C+ekCp ++
  MMETSP0890-20130614|40516_1  8 HCIECGFCESNCPSRDAalTPRQRITVWREINRlarlevdgaisstdqerlHAMRKEYEYAGLDMCAADGMCQEKCPVKI 87
                 8*************9994444455556666666778888877777665444344445555799**************876 PP

>> PF12838.2  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   2.1   8.7e-10   9.1e-07       1      51 [.       8      86 ..       8      87 .. 0.70
   2 ?   -1.3   0.4       2.5   2.6e+03       7      38 ..     258     292 ..     249     296 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 8.7e-10
    PF12838.2  1 kCigCgaCvaaCptgaitldeeeeek...........................gkkkvev.dpekCtgCgaCvtvCPtg 51
                 +Ci+Cg+C+ +Cp+    l+++++ +                            +k++e+   ++C   g C++ CP++
  MMETSP0890-20130614|40516_1  8 HCIECGFCESNCPSRDAALTPRQRITvwreinrlarlevdgaisstdqerlhaMRKEYEYaGLDMCAADGMCQEKCPVK 86
                 6************888888887666655555556666666555555554444322444541599*************97 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.5
    PF12838.2   7 aCvaaCptgaitldee...eeekgkkkvevdpekC 38 
                   Cv+a ++++ +l++e   ++e+g++ ++ d   C
  MMETSP0890-20130614|40516_1 258 GCVDASKAKVAELEKElliASENGRHPIVCDTSPC 292
                  69999999999988764445556666667777777 PP

>> PF13237.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   2.0   3.2e-09   3.4e-06       7      52 .]       7      84 ..       3      84 .. 0.79
   2 ?   -3.8   0.0       9.7     1e+04      30      44 ..     346     369 ..     340     371 .. 0.60

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 3.2e-09
    PF13237.1  7 dkCigCgrCekaCPa................................dlaqaigageeavsidaerCisCgaCvevCP 52
                 d+Ci Cg Ce+ CP+                                d+ +  ++ +e+   +++ C   g+C+e CP
  MMETSP0890-20130614|40516_1  7 DHCIECGFCESNCPSrdaaltprqritvwreinrlarlevdgaisstDQERLHAMRKEYEYAGLDMCAADGMCQEKCP 84
                 89*************8888888888888887777777777777777666666666666666677779999*******9 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 9.7
    PF13237.1  30 geeavsidaerCis.........C 44 
                  +e+ +++ +++C +         C
  MMETSP0890-20130614|40516_1 346 LENQFESLVAKCAEdvvptgvpcC 369
                  566667777777665555444444 PP

>> PF13746.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   1.6    0.0046       4.8      49      63 ..       6      20 ..       2      22 .. 0.84
   2 !   16.9   0.1   5.3e-06    0.0055      25      67 ..      46      88 ..      27      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0046
    PF13746.1 49 lgdCvgCgrCvevCp 63
                    C+ Cg C+  Cp
  MMETSP0890-20130614|40516_1  6 VDHCIECGFCESNCP 20
                 568***********9 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.3e-06
    PF13746.1 25 yearieerkkkryrrlhkvkdneglgdCvgCgrCvevCpvgId 67
                 ++++i + +++r + ++k  +++gl +C   g C e Cpv+I+
  MMETSP0890-20130614|40516_1 46 VDGAISSTDQERLHAMRKEYEYAGLDMCAADGMCQEKCPVKIN 88
                 45566677788889999999**********************7 PP

>> PF13484.1  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.0     5e-07   0.00052       1      66 [.       8      85 ..       8      86 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5e-07
    PF13484.1  1 fCgtCgkCaeaCPtgaiseekeptweargcwsa..........ntagkkkleldeekcakgeaitgCg...iCqkvCPf 66
                 +C++Cg C ++CP+    ++ ++++ + +++++            +++++l+ + ++  ++    +C    +Cq+ CP+
  MMETSP0890-20130614|40516_1  8 HCIECGFCESNCPSRDAALTPRQRITVWREINRlarlevdgaiSSTDQERLHAMRKEY-EYAGLDMCAadgMCQEKCPV 85
                 7*************55554445788888877777788888876334444443333333.2444566654448******7 PP

>> PF00037.22  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.6   8.1e-06    0.0085       6      20 ..       7      21 ..       5      22 .. 0.92
   2 !    8.4   0.6    0.0014       1.5       6      21 ..      71      86 ..      70      87 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.1e-06
                 TT-----HHHHH-TT CS
   PF00037.22  6 ekCigCGaCvevCPv 20
                 + Ci CG C++ CP 
  MMETSP0890-20130614|40516_1  7 DHCIECGFCESNCPS 21
                 78************5 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0014
                 TT-----HHHHH-TTT CS
   PF00037.22  6 ekCigCGaCvevCPvg 21
                 ++C + G C e CPv 
  MMETSP0890-20130614|40516_1 71 DMCAADGMCQEKCPVK 86
                 899***********95 PP

>> PF12797.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.0   1.2e-06    0.0013       6      21 ..       4      20 ..       1      21 [. 0.86
   2 ?    2.1   0.4      0.18   1.9e+02       8      22 .]      71      85 ..      67      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
    PF12797.2  6 D.lekCigCgaCvsaCP 21
                 D +++Ci+Cg C+s CP
  MMETSP0890-20130614|40516_1  4 DlVDHCIECGFCESNCP 20
                 55789************ PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.18
    PF12797.2  8 ekCigCgaCvsaCPa 22
                 ++C   g C++ CP+
  MMETSP0890-20130614|40516_1 71 DMCAADGMCQEKCPV 85
                 56777799******6 PP

>> PF13187.1  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   5.9   0.00013      0.14       2      53 ..       9      86 ..       8      87 .. 0.88
   2 ?    5.7   0.7     0.015        16       2      27 ..      73      98 ..      71     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00013
    PF13187.1  2 CigCgrCvdaCPagvfesdkdeakkevedkgeee..........................vaekCtgCgaCvevCPtg 53
                 Ci+Cg C+++CP       ++++ ++ ++ +                             ++ +C   g C e CP++
  MMETSP0890-20130614|40516_1  9 CIECGFCESNCPSRDAALTPRQRITVWREINRLArlevdgaisstdqerlhamrkeyeyaGLDMCAADGMCQEKCPVK 86
                 ***********99988888888888877766665889999999**************9999999999999******98 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.015
    PF13187.1  2 CigCgrCvdaCPagvfesdkdeakke 27
                 C   g C++ CP+++++ + ++   e
  MMETSP0890-20130614|40516_1 73 CAADGMCQEKCPVKINTGELVKTIRE 98
                 66668899999999998887776665 PP

>> PF12800.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.4   0.00016      0.17       4      16 ..       9      21 ..       6      24 .. 0.91
   2 ?    1.5   0.3      0.43   4.6e+02       3      16 ..      72      85 ..      70      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
    PF12800.2  4 CigCgsCvdvCPq 16
                 Ci+Cg C++ CP+
  MMETSP0890-20130614|40516_1  9 CIECGFCESNCPS 21
                 ************7 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.43
    PF12800.2  3 rCigCgsCvdvCPq 16
                  C + g C+  CP 
  MMETSP0890-20130614|40516_1 72 MCAADGMCQEKCPV 85
                 6888888*****96 PP

>> PF12798.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.8    0.0016       1.7       1      13 [.       9      21 ..       9      24 .. 0.87
   2 ?    9.8   0.7     0.001       1.1       2      14 ..      71      86 ..      71      87 .. 0.90
   3 ?   -2.4   0.5       8.5     9e+03       4      10 ..     250     262 ..     249     262 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0016
    PF12798.2  1 CdgCgaCvevCPt 13
                 C++Cg C+  CP+
  MMETSP0890-20130614|40516_1  9 CIECGFCESNCPS 21
                 ************6 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.001
    PF12798.2  2 dgC...gaCvevCPtg 14
                 d+C   g C+e CP++
  MMETSP0890-20130614|40516_1 71 DMCaadGMCQEKCPVK 86
                 699999********97 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 8.5
    PF12798.2   4 C......gaCvev 10 
                  C       +Cv++
  MMETSP0890-20130614|40516_1 250 CgimfhsRGCVDA 262
                  3445555789986 PP

>> PF12837.2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   7.3e-05     0.077       9      21 ..       9      21 ..       7      26 .. 0.85
   2 ?   -0.4   1.0         1   1.1e+03       9      22 ..      73      86 ..      71      88 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.3e-05
    PF12837.2  9 CigCgdCvrvCPe 21
                 Ci Cg C+ +CP 
  MMETSP0890-20130614|40516_1  9 CIECGFCESNCPS 21
                 ************5 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1
    PF12837.2  9 CigCgdCvrvCPeg 22
                 C   g C + CP++
  MMETSP0890-20130614|40516_1 73 CAADGMCQEKCPVK 86
                 555588******85 PP

>> PF13370.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.5    0.0039       4.1       4      17 ..       7      20 ..       6      22 .. 0.90
   2 ?    3.3   0.6      0.09        95       4      17 ..      71      84 ..      70      86 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0039
    PF13370.1  4 dtCiaCgaCreaAP 17
                 d Ci Cg C + +P
  MMETSP0890-20130614|40516_1  7 DHCIECGFCESNCP 20
                 58***********9 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.09
    PF13370.1  4 dtCiaCgaCreaAP 17
                 d C a+g C+e +P
  MMETSP0890-20130614|40516_1 71 DMCAADGMCQEKCP 84
                 57***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       351  (0.0256729); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 1237.65
//
Query:       MMETSP0890-20130614|40522_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-28   97.4   0.0    8.6e-28   97.0   0.0    1.1  1  PF02784.11 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
    6.6e-15   54.7   0.0    1.1e-14   53.9   0.0    1.3  1  PF00278.17 Pyridoxal-dependent decarboxylase, C-terminal sheet domain


Domain annotation for each model (and alignments):
>> PF02784.11  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   1.3e-31   8.6e-28      19     251 .]      82     313 ..      64     313 .. 0.86

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 1.3e-31
                  C.EEE.EBGGG---HHHHHHHHT---EEEE-SHHHHHHHHHCTT-CCCEEEE-SS--HHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCT.....EEEEB-B-S-----TTSS-S---------BGGGHHHHHHHHHHHTT-EEEEEB--------CHHHHHHHHHHHHHHHHHHH......--SEEE--------TTS...SS-HHHHHHHHHHHHHHHHHH--TT-EEEE----TTTTT CS
   PF02784.11  19 rkvqvvyAvKansdkavlqllaelGlglDcaSkgElelvlaagvsperiifanpcksrselrlaleaqvvvvtvdneeeLekvaklapel.....elllRvkpdvdakahkklstgqedsKFGldlekeaeellkaakelelklvGvhfhvGSqisdleafvkAveearevfeelakelGveelkiLdvGGGlgvdyte...aeeleeiaevinaaleevfeegvkevtiiaEpGRalvaa 251
                  +  +v yA+Ka+++ a+l+l +++Gl +D++S +E  ++++ag++p ri  + +  + ++ +l+ e +v++++  + e ++   +  + +     ++++R++p++ ++ ++k++ g+  s FG++  + ++++  ++ke +l+   vh h+GS+ sd e  v+ ++++ +++++l       ++++L++GGG+ v++     a+++  +   + +  e++++++ +++++ +EpG +lva+
  MMETSP0890-20130614|40522_1  82 YGLTVRYAMKACPNGALLKLFDKMGLHFDASSTNEAWRAMRAGIDPARISLSTQQLDDDFSQLV-ELGVKINAC-SIEQIRAFGRARAGEsisekNIGIRFNPGLGSGGTSKTNVGGPASSFGIWHGD-LDNVKATLKEFDLTPERVHTHIGSG-SDPEVWVRVAKMSLDLCQKLG-----PSVTTLNLGGGYKVARMPtekATDFYTVGTPVAQEFEDFAQRTGTKLHLEIEPGTYLVAN 313
                  356899**********************************************999998877766.557777776.66667666666655566677********************************9.************************9.589999999999999998877.....4489**********986666699999999999999999999999**************96 PP

>> PF00278.17  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   1.7e-18   1.1e-14       2     114 ..     317     441 ..     316     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 1.7e-18
                  EEEEBEEEEE--S...TTHCHCEEEESS-HHCHTTHHHHS----EEECSS...-TTTTEEEEEEEESSS-TT--SEE........EEEEEE....-TTS--EEEES-----TCTC-B.-CCC--.-EEE CS
   PF00278.17   2 lltnViavktlresdvksqsdvdvyvndgvfqspdswlidqlfpilplsr...laeeptrkatlaGptCdsdDviak........estlpl....elkegdllvffdvGAYtealas.nfngfgdpaev 114
                  l+t+V +  + + + +  +  +++ +++g+ + +++ l++ ++pi+++      ++ +t+ ++++G++C+s+D ++                     ++gd+ v+++vGAY+ a+a+  +n+f +p+e+
  MMETSP0890-20130614|40522_1 317 LVTSVQDITSTKTGGAHGEGFDFLKLDCGMTDVLRPSLYGSQHPIVVVPAkpsAESLNTADYVIVGHCCESGDLLTPapdepsvlA----TrrtvLAQKGDFAVIESVGAYCAAMATkGYNSFTEPPEI 441
                  6777777777666554555555777************************988888999*****************77666643331....3566689********************99******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      244  (0.0178467); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.96
# Mc/sec: 1185.70
//
Query:       MMETSP0890-20130614|40524_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-16   58.4   0.0    6.4e-16   58.3   0.0    1.0  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   4.7e-20   6.4e-16     141     242 ..      14     124 ..       1     155 [. 0.71

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 4.7e-20
                  EE-.EEEE----S-GGG-CCBEE--SSSSSCHHHCCCHHHHCCHHCCH....EEEBE-SHHHHHHHHH----SEEEEEE....EEBHHHH----HHHHH---EEEECSS-.....S CS
   PF00459.20 141 lng.qklkvsrapptseallatlfavssvkdtseaellekvlsavssp....gvrrvgssalklalvAeGkadayiefg....rekkWDhaAGvaiveeaGGvvtdlkge.....g 242
                  +n+ ++l++++++ ++ ++ +tl+++ + ++t+ a  ++ +  ++s +    +vr   +s++k +++A+G+ad++++++    rek WD+a++v++v+eaGG +td  g+     +
  MMETSP0890-20130614|40524_1  14 SNHwRPLSARKKD-IKTHFNLTLVEGVESSHTNSAWAQAVM--NLSGAysfdSVRL--DSQAKAVMLADGRADCFMRLPtagyREKVWDVAPAVILVQEAGGLFTDRYGRqlqfnE 124
                  4445667777777.777777777777777777774444433..4444454656666..********************99*****************************9444431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       287  (0.0209918); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.41s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 485.34
//
Query:       MMETSP0890-20130614|40525_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.36s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 661.68
//
Query:       MMETSP0890-20130614|40531_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-22   79.2  22.1    2.1e-22   79.2  15.3    1.7  3  PF01061.19 ABC-2 type transporter
      2e-13   50.6   0.0    4.6e-13   49.4   0.0    1.6  1  PF00005.22 ABC transporter
    6.5e-07   29.4   0.2    0.00032   20.6   0.1    2.3  1  PF13304.1  AAA domain
    8.8e-05   21.6   0.0    0.00015   20.8   0.0    1.3  1  PF03193.11 Protein of unknown function, DUF258
     0.0001   21.6   0.1    0.00026   20.3   0.1    1.6  1  PF13555.1  P-loop containing region of AAA domain
     0.0003   19.9   0.2       0.12   11.4   0.0    2.2  2  PF02463.14 RecF/RecN/SMC N terminal domain
    0.00035   19.8   0.0     0.0021   17.3   0.0    2.0  2  PF13481.1  AAA domain
     0.0027   17.8   0.0     0.0068   16.5   0.0    1.8  1  PF13238.1  AAA domain
      0.005   17.5   0.1      0.013   16.1   0.0    1.6  1  PF13207.1  AAA domain
     0.0055   16.4   0.0      0.012   15.3   0.0    1.6  2  PF13671.1  AAA domain
  ------ inclusion threshold ------
       0.02   14.0   0.2      0.036   13.2   0.2    1.3  1  PF12846.2  AAA-like domain
      0.021   15.0   0.5      0.096   12.9   0.0    2.2  3  PF13191.1  AAA ATPase domain
      0.041   13.7   0.0        0.1   12.5   0.0    1.7  1  PF01926.18 50S ribosome-binding GTPase
      0.041   12.8   0.0       0.68    8.8   0.0    2.1  2  PF13175.1  AAA ATPase domain
      0.057   12.4   0.1       0.11   11.5   0.0    1.3  1  PF06414.7  Zeta toxin
      0.091   11.5   0.0       0.15   10.8   0.0    1.2  1  PF00437.15 Type II/IV secretion system protein
        0.1   12.1   0.1       0.24   10.9   0.1    1.5  1  PF07728.9  AAA domain (dynein-related subfamily)
       0.12   12.5   0.1       0.25   11.5   0.0    1.6  2  PF13476.1  AAA domain
       0.15   10.6   0.0       0.22   10.1   0.0    1.2  1  PF03215.10 Rad17 cell cycle checkpoint protein


Domain annotation for each model (and alignments):
>> PF01061.19  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.7   4.8e+03      70      95 ..     193     218 ..     191     219 .. 0.82
   2 !   79.2  15.3   2.9e-25   2.1e-22       2     208 ..     326     531 ..     325     532 .. 0.95
   3 ?   -3.7   0.0       6.6   4.8e+03     130     142 ..     557     569 ..     548     575 .. 0.56

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.7
   PF01061.19  70 siapiferergvlerelvsplyslsa 95 
                   ia+  ++er v++ ++  p++++s+
  MMETSP0890-20130614|40531_1 193 MIALAQDQERTVIVTLHQPPWSTVSS 218
                  57889999999999999999977665 PP

  == domain 2    score: 79.2 bits;  conditional E-value: 2.9e-25
   PF01061.19   2 qikallkreflqryrdpslgllwkliqpllmalvfgtvfgnlgnssggl.qrpgllffsvlflafslltsiapiferergvlerelvsplyslsaivlakvlvelpvsllqaiifllivyflvgldlsf...flflllllltalfasslgllisalapsfedasqlasllllpllllsGvfipldsmpkwlqwiyylnPltyavealrsnl 208
                  q+ +l++r++  +  d  ++   +li  +++a+++g+ f n+g    +   ++g+++ +v  +++++++++a+++++e +++ re ++++y   a+ +a++++ ++ +++++i +++i++ l+gl+ +f   f+ + +++lt++++s +g +i+++ ++   a+q+a  + ++ l++ G+++ ++ ++ +l  +yy  Pl y++e+++ ++
  MMETSP0890-20130614|40531_1 326 QVSVLTRRSWYIFCVDEDQL-PEMLIPAIITAFMVGFSFRNWG----FNvYFGGAIMLIVGSVGMLTISGLALTIPVELKLVLREYRNGTYCMAAYWTARTIIGFAAAFIVTIPLFTITWGLIGLQAEFypwFYSWSAAYLTGCIFSVFGNIIGIVYETPVAAAQVAEPISILSLIFAGALVTRHFIKDYLLPLYYSLPLGYSFEIVMTSI 531
                  88999999999999999999.889****************997....443779***************************************************************************5567*******************************************************66*****************99876 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 6.6
   PF01061.19 130 flflllllltalf 142
                  fl+l+++l+++++
  MMETSP0890-20130614|40531_1 557 FLVLIVMLVVTIA 569
                  3434444444333 PP

>> PF00005.22  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   6.4e-16   4.6e-13       1     118 []      40     179 ..      40     179 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 6.4e-16
                  HHHHHHHTTSS------EEE-............--BGGGB-HHHHH.EE.EE-------.--BHHHHHH----S--........-HHHHHHHHHH---HHHH--....----------HHHHHHHHHHTT--SEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxx.x.........xxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00005.22   1 STLlklltgelkptegeievd.n.........drkdlesdkleklr.ig.yipqdpllfpeltvrenldmakeekk........tdkrieevlekvgldelldk....srvstLSgGqkqrvalArallkkpklllLDEPtn 118
                  STLl+ll+g l   +ge+ ++ +            d  ++ l++++ ig  +pqd++l + ltvr+ l++  e           +++r+e ++e+++l+ ++d+    s   ++SgGqk+rv++++ ll + +++lLDEPt+
  MMETSP0890-20130614|40531_1  40 STLLNLLSGRLP--TGEVVLQdGtkvqstigeIFVDSLPTTLAAFKkIGtLTPQDEHLPELLTVRQALMYTAELRSprkwsygqKQARVESIMENFNLKTKADTvignSLKVGISGGQKKRVSICMDLLAELPIMLLDEPTT 179
                  9**********9..899999955877665554233333445555559661579999999*********88887766****************************8887777789***************************6 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   4.4e-07   0.00032       3     299 ..      30     211 ..      28     211 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.4e-07
    PF13304.1   3 viiGpNgsGKSnlLkaldflfrdelvlglnldrslnvniekipflldeeeieipiefeielflsdgiryrygfeigksqieeewlfeyekkkeeliflrkrsleeydkknskkrnirggikifslltlslnsandllflkiltdilkrfisilklldsllnieislfelfkdlflesklkrlldllikgiddleielsdlkkvlklsllidedllekdviflkkgdggelplsdlSdGtkrllalltallsalekgsvlliDEpEngLHPkllrrliell.kelsnggsQlifTTHSp 299
                   + Gp gsGKS+lL  l++   +    ++ l ++ +v+  +   + d+ + +     +i +   ++ +    + +                                                                                       +++ +  ++++ +++k+ r   + ++  ++ + +    ++    +                            S G+k+  ++ + ll  l   ++ l+DEp +gL+ ++  +++e +    +++  ++i+T H p
  MMETSP0890-20130614|40531_1  30 MLAGPSGSGKSTLLNLLSG---RLPTGEVVLQDGTKVQSTIGEIFVDSLPTTLAAFKKIGTLTPQDEHLPELLTVRQALM----------------------------------------------------------------------------------YTAELRSPRKWSYGQKQARVESIMENFNLKTKADTVIGNSLKVGI----------------------------SGGQKKRVSICMDLLAEL---PIMLLDEPTTGLDASAALNVVETMiALAQDQERTVIVTLHQP 211
                  688**************99...4444444444444445555555555555555555555544444444444444444444..................................................................................666666666666555555555555554444333333333333333............................******************...***************9999995553444446779**999987 PP

>> PF03193.11  Protein of unknown function, DUF258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.1e-07   0.00015      26      63 ..      16      52 ..       3      75 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.1e-07
                 -HHHHHHCTT.SBEEEE-------HHHHHHH-------- CS
   PF03193.11 26 leelaellkd.ktsvlvGqSGvGKSsLinallpeldlkv 63
                 +++++  ++   +s+l+G+SG GKS+L+n l+++l   +
  MMETSP0890-20130614|40531_1 16 MQNINVRFDAgTVSMLAGPSGSGKSTLLNLLSGRL--PT 52
                 66777777766899*****************9874..34 PP

>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   3.6e-07   0.00026      16      40 ..      20      43 ..      15      48 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.6e-07
    PF13555.1 16 tveidpkgkntlltGasGsGKSTll 40
                  v++d +g++ +l+G+sGsGKSTll
  MMETSP0890-20130614|40531_1 20 NVRFD-AGTVSMLAGPSGSGKSTLL 43
                 57888.5679**************8 PP

>> PF02463.14  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0063       4.5      21      42 ..      22      44 ..      14      50 .. 0.76
   2 !   11.4   0.0   0.00017      0.12     123     202 ..     126     213 ..     110     227 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0063
                 ----.SEEEE--------HHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxxx RF
   PF02463.14 21 pfsk.sftaivGpNGSGKsnvld 42
                 +f+   ++++ Gp GSGKs +l+
  MMETSP0890-20130614|40531_1 22 RFDAgTVSMLAGPSGSGKSTLLN 44
                 5554147899*********9986 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00017
                  HHHHHHCTT--TT...........G-----HHHHHHHHHHHHHTSS--SEEEESSTTTT--HHHHHHHH.HHHHHH-BTBEEEEE-S-HHHH CS
                  xxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
   PF02463.14 123 vaellesagiske...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvskva.ellkeksknaQfivislreeml 202
                  v++++e+ +++ +            +SgG+k+ v++++          p++llDe    LD++   +v+ +++  ++++   ++++l++   
  MMETSP0890-20130614|40531_1 126 VESIMENFNLKTKadtvignslkvGISGGQKKRVSICMD----LLAELPIMLLDEPTTGLDASAALNVVeTMIALAQDQERTVIVTLHQPPW 213
                  55555555555555666666666678******9999875....57789*************9987665516888888888888888877654 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.8e-06    0.0021      27      61 ..      17      54 ..       5      72 .. 0.75
   2 ?   -0.6   0.0       0.9   6.5e+02     162     189 ..     183     210 ..     179     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.8e-06
    PF13481.1 27 kg...llprgsltllaGapgtGKStlalqlaaavatGe 61
                 ++   ++++g++++laG++g+GKStl+  l +++ tGe
  MMETSP0890-20130614|40531_1 17 QNinvRFDAGTVSMLAGPSGSGKSTLLNLLSGRLPTGE 54
                 434446789*****************988877777766 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.9
    PF13481.1 162 nsdvgaviaalerlakrtgaavllvhHt 189
                  +s++  v++ + +la+    +v+++ H 
  MMETSP0890-20130614|40531_1 183 ASAALNVVETMIALAQDQERTVIVTLHQ 210
                  556678999****************996 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.5e-06    0.0068       3      23 ..      31      60 ..      30     143 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 9.5e-06
    PF13238.1  3 itGtpGvGKtTlakeLaerl.........g 23
                 ++G++G+GK+Tl+++L+ rl         g
  MMETSP0890-20130614|40531_1 31 LAGPSGSGKSTLLNLLSGRLptgevvlqdG 60
                 89***************9998854444441 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.8e-05     0.013       4      23 ..      31      50 ..      30      73 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.8e-05
                 -B--TT---HHHHHHHHHHS CS
    PF13207.1  4 itGppGsGKsTlakeLaerl 23
                 + Gp+GsGKsTl ++L+ rl
  MMETSP0890-20130614|40531_1 31 LAGPSGSGKSTLLNLLSGRL 50
                 57**************9987 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-05     0.012       2      32 ..      29      60 ..      28     143 .. 0.72
   2 ?   -3.2   0.0         9   6.4e+03      60      75 ..     191     206 ..     176     228 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-05
    PF13671.1  2 vllvGlpGsGKstlaerllkklg.yvrlsqdt 32
                  +l G++GsGKstl++ l  +l+ ++++ qd 
  MMETSP0890-20130614|40531_1 29 SMLAGPSGSGKSTLLNLLSGRLPtGEVVLQDG 60
                 5899**************99999888888885 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 9
    PF13671.1  60 nklarkalsagrsviv 75 
                  + +++ a+ + r+viv
  MMETSP0890-20130614|40531_1 191 ETMIALAQDQERTVIV 206
                  3344444444444444 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   4.9e-05     0.036       5      24 ..      30      49 ..      27      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.9e-05
    PF12846.2  5 lilGppGsGKSvllkklvlq 24
                 ++ Gp+GsGKS+ll+ l  +
  MMETSP0890-20130614|40531_1 30 MLAGPSGSGKSTLLNLLSGR 49
                 789************99655 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.096      25      42 ..      28      45 ..      19     110 .. 0.82
   2 ?   -2.2   0.0       5.9   4.3e+03     116     156 ..     188     227 ..     134     240 .. 0.72
   3 ?   -1.6   0.0       3.8   2.7e+03      91     141 ..     303     344 ..     273     347 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
    PF13191.1 25 lllvtGpsGiGKSsLlre 42
                 +  + GpsG+GKS+Ll+ 
  MMETSP0890-20130614|40531_1 28 VSMLAGPSGSGKSTLLNL 45
                 55699***********87 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 5.9
    PF13191.1 116 alvalldaalartrrpklvlvlDDlqwadresldlLealle 156
                  + v+++ a++++++r  +++ l +  w++ +s d L  l++
  MMETSP0890-20130614|40531_1 188 NVVETMIALAQDQERT-VIVTLHQPPWSTVSSFDKLVLLAR 227
                  3344444444444433.888888888888888877777765 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 3.8
    PF13191.1  91 ggwreallaalgalipelegiiglqalvalldaalartrrpklvlvlDDlq 141
                  ++++e l++         ++ ++  +l++ l++    trr+ +++++D+ q
  MMETSP0890-20130614|40531_1 303 DQRAELLEN---------QQGDDAVDLESYLHQVSVLTRRSWYIFCVDEDQ 344
                  333333333.........344466788888888888888544888888765 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014       0.1       3      22 ..      30      49 ..      28      93 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00014
                 EEE--TT---HHHHHHHHCS CS
   PF01926.18  3 aivGrpNvGKStLinaLtge 22
                 ++ G + +GKStL+n L+g+
  MMETSP0890-20130614|40531_1 30 MLAGPSGSGKSTLLNLLSGR 49
                 689**************973 PP

>> PF13175.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.14        99      23      42 ..      27      46 ..      12      95 .. 0.78
   2 ?    8.8   0.0   0.00094      0.68     372     412 ..     171     211 ..     154     212 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.14
    PF13175.1 23 slnviiGeNgsGKttILeal 42
                  ++++ G +gsGK+t+L  l
  MMETSP0890-20130614|40531_1 27 TVSMLAGPSGSGKSTLLNLL 46
                 456899***********988 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00094
    PF13175.1 372 IlliDEPeahlhptlqkellefLkelakknniqiiitTHsp 412
                  I l+DEP + l++++  ++ e  + la+++  ++i+t H p
  MMETSP0890-20130614|40531_1 171 IMLLDEPTTGLDASAALNVVETMIALAQDQERTVIVTLHQP 211
                  99*************************************98 PP

>> PF06414.7  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.11      18      46 ..      28      56 ..      17      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
    PF06414.7 18 avllgGqpGAGKtslaellleelaagniv 46
                 + +l+G+ G+GK++l++ll ++l +g++v
  MMETSP0890-20130614|40531_1 28 VSMLAGPSGSGKSTLLNLLSGRLPTGEVV 56
                 5689*****************99655555 PP

>> PF00437.15  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.15     132     155 ..      30      53 ..       6      62 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00021
   PF00437.15 132 lvsGgTgsGKttllnallaeinkd 155
                  +++G+ gsGK+tlln l   +++ 
  MMETSP0890-20130614|40531_1  30 MLAGPSGSGKSTLLNLLSGRLPTG 53 
                  789**************9999987 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00034      0.24       3      27 ..      30      55 ..      29      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00034
                 EEE------HHHHHHHGGGGB.S--E CS
    PF07728.9  3 lLvGppGtgKselaerlaeal.nrev 27
                 +L Gp+G+gKs+l  +l+ +l + ev
  MMETSP0890-20130614|40531_1 30 MLAGPSGSGKSTLLNLLSGRLpTGEV 55
                 79****************99965554 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00035      0.25      12      40 ..      18      47 ..      13     142 .. 0.88
   2 ?   -3.0   0.0       9.6   6.9e+03     100     100 ..     287     287 ..     259     327 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00035
    PF13476.1 12 dqeidFskg.ltlItGpNGsGKTTildAic 40
                 + ++ F+ g +  + Gp GsGK+T+l+ + 
  MMETSP0890-20130614|40531_1 18 NINVRFDAGtVSMLAGPSGSGKSTLLNLLS 47
                 56677877657899************8765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 9.6
    PF13476.1 100 k 100
                  +
  MMETSP0890-20130614|40531_1 287 N 287
                  1 PP

>> PF03215.10  Rad17 cell cycle checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00031      0.22      47      68 ..      28      49 ..      15     101 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00031
   PF03215.10 47 illltGPsGcgKsTtvkvlske 68
                 + +l+GPsG+gKsT ++ ls  
  MMETSP0890-20130614|40531_1 28 VSMLAGPSGSGKSTLLNLLSGR 49
                 5689**************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       580  (0.0424225); expected 273.4 (0.02)
Passed bias filter:                      376  (0.0275015); expected 273.4 (0.02)
Passed Vit filter:                        83  (0.0060708); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.05u 0.40s 00:00:01.45 Elapsed: 00:00:01.03
# Mc/sec: 1363.36
//
Query:       MMETSP0890-20130614|40532_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   51.3   0.5    1.7e-13   50.8   0.4    1.2  1  PF12697.2  Alpha/beta hydrolase family
    6.8e-07   29.0   0.8    4.8e-06   26.2   0.5    2.0  1  PF12695.2  Alpha/beta hydrolase family
     0.0011   18.1   0.0     0.0021   17.2   0.0    1.4  1  PF00326.16 Prolyl oligopeptidase family
     0.0022   17.4   0.4      0.018   14.5   0.1    2.4  2  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.4   5.1e-17   1.7e-13       1     217 [.      54     322 ..      54     334 .. 0.72

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 5.1e-17
                  EEE--------.----HHHHHHT..TTSEEEEE-----------S.....S--HHHHHHHHHHHHHH--.....--EEEE--------HHHHHH-.---....EEEEEEE------STT......................---TTHHHHHHHHHH----....--H..HHHHH-..----HHHHHH.--GGGG....GG..........------HHHHTT--S-EEEEE-----HHH...........HHHHHHHHHHSTTEEEEE---SSSS- CS
    PF12697.2   1 vvllHGlggsa.eswrplaeaLa..agyrvvapDlpGhGrSdrppd..ydpdtledlaadlaalldalgl....rpvvlvGHSlGgavalaaaar.rpd...lvrglvlidppgplpas......................alrpagpsllrrllagraaalrdlaarafarlfd..gdelealvra.daaalaellraa..........lldadlrealarldvPvlviageaDrvvp...........peearrlaealpgarvvvlpgagHll 217
                  +vll Glgg++ +s+ + + + a  +gy + a++++ +G+     +  +    ++  ++dlaa++d+++     ++v  +G+S +g++ ++ +a+ +p+   ++++  ++++p++ pas                      a   ++ s+l ++  g +++ ++++  + ++ +d   +e ++ +r+ d a +a                 +++++  ++a  ++P  ++ +++D+++             + ++ +a   p+  + v  ++gHl+
  MMETSP0890-20130614|40532_1  54 LVLLSGLGGGShDSYVKHMALAAqkRGYAIAAVNMRACGGRRIETPrfF--SAYRGSVDDLAAAVDKAREmfqpEKVAAIGWSNSGSILINSCAQeEPNalvNIDAACALAAPLNMPASsswlkqswfhsrvydysigtnlATKFKEASHLFQMPDGSPKPVKKWEPIGGYYVADvqLAENAKSIREiDEAITA-----PcfgfdsvddyYAFSSPDNRIADTKLPLFILNAADDPIARwgpnhhpdsifLRRLKSVASSNPNLVFAVTRHGGHLG 322
                  79*****9888778888888776578************99886654342..344566778888888777777779********999999997666377799999999999999988887888888888888888777777622222345566666666666666664444433332222223333333333333.....1344458888878888899******************98887777756666666688899999999999999**997 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.5   1.4e-09   4.8e-06       2     115 ..      54     284 ..      53     321 .. 0.59

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.4e-09
    PF12695.2   2 vvlvhGagg.dssaye.plaealakrgfavvavdlpghgas.egaa............aakrvlaadll...dleriilvGhSlGGgvalelag........................................................................................rd.drvkglvllapf.............pdgedlakltlpvllihGtrDgvv 115
                  +vl+ G gg ++++y   +a a +krg+a++av+++  g +   ++            ++++++ +++    ++e+++ +G+S  G++ ++ ++                                                                                        +  ++++ ++    f             p ++++a+++lp++++++++D ++
  MMETSP0890-20130614|40532_1  54 LVLLSGLGGgSHDSYVkHMALAAQKRGYAIAAVNMRACGGRrI-ETprffsayrgsvdDLAAAV-DKARemfQPEKVAAIGWSNSGSILINSCAqeepnalvnidaacalaaplnmpassswlkqswfhsrvydysigtnlatkfkeashlfqmpdgspkpvkkwepiggyyvadvqlaenaKSiREIDEAITAPCFgfdsvddyyafssP-DNRIADTKLPLFILNAADDPIA 284
                  78888887624555542888888888*********99998742.33355555566444666666.44446899******************999666655555555555555555555555555555555555555555555555555555555555555554444444444444444444422233333333222122222222332212.3344555557777777777766 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.1e-07    0.0021       8      89 ..      74     152 ..      67     207 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.1e-07
                  HHHHH----EEEE----------TTT----GGGGHHHHHHHHHHHHHHHH-----GGGEEE-----.---HHHHHHHH-GGG- CS
   PF00326.16   8 qlladrGyvvvvanirGsggyGekwhdagkrklgqnefdDfiaaaealakegyvdpdrlaitGgSy.GGylvgaalnqrpdlF 89 
                    +++rGy+++++n+r  g  G+  +          ++dD++aa++++  ++  +p+++a+ G+S+ G  l++ ++ ++p+  
  MMETSP0890-20130614|40532_1  74 LAAQKRGYAIAAVNMRACG--GRRIETPRFFSAYRGSVDDLAAAVDKA--REMFQPEKVAAIGWSNsGSILINSCAQEEPNAL 152
                  445699************9..55666555666677789********98..5679***********967789999999998865 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.1e-06     0.018      25     187 ..     107     282 ..      81     287 .. 0.56
   2 ?   -1.2   0.0      0.31   1.1e+03     199     227 ..     322     349 ..     315     350 .] 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.1e-06
                  GSHHHHHHHHHHHHHHSTSSSEEEEE-B.---HHHHHHHHHCGG...GEEEEEEESB--...................................HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHH.............CHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCEC...HCHHHHHHHHHCCHHHT-TSSEEEEECCTTS CS
   PF00561.15  25 yttddlardleavldalglkkltlvGhS.mGGmialayaaeypd...rvkamvllgtva...................................vlsdglssdvlnrgstltlladnvagrlskgikplqgdasvq.............aqsllrpqvtdflkrfdansyaregetraldgkll...aalgrdlvwdvtetlktilvptlvisgtdDp 187
                    +ddla+++++ ++ +  +k++++G+S  G+ +    a+e+p    +++a+ +l++++                                   +                                                      ++  + + v d   + +a+s+++  +++a ++  +    +  ++++++  + + + + p++++++ dDp
  MMETSP0890-20130614|40532_1 107 GSVDDLAAAVDKAREMFQPEKVAAIGWSnSGSILINSCAQEEPNalvNIDAACALAAPLnmpassswlkqswfhsrvydysigtnlatkfkeasH----------------------------------------LfqmpdgspkpvkkWEPIGGYYVADVQLAENAKSIRE--IDEAITAPCFgfdSVDDYYAFSSPDNRIADTKLPLFILNAADDP 282
                  469*************************6699999999999999888888888888885444333332222222222222222222222222220........................................0222222233344455555555555555555444444..22222222222335555555555555555555555555555555 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.31
                  HCSTTEEEEEETTHHCSHHHHSCHHHHHH CS
   PF00561.15 199 elipksqlvvidgpgHlafldkpdeinkl 227
                   ++p + + ++d+ +H+++  + d  +k+
  MMETSP0890-20130614|40532_1 322 GWCPGHPYATTDA-SHWVQDTALDFLDKA 349
                  6788888899999.999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       214  (0.0156524); expected 273.4 (0.02)
Passed bias filter:                      201  (0.0147016); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.94
# Mc/sec: 892.26
//
Query:       MMETSP0890-20130614|40534_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.058   13.1   0.1      0.058   13.1   0.1    2.3  3  PF03941.10 Inner centromere protein, ARK binding region


Domain annotation for each model (and alignments):
>> PF03941.10  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.4      0.54   7.4e+03       5      12 ..      75      82 ..      72      83 .. 0.80
   2 ?   13.1   0.1   4.2e-06     0.058       1      24 [.      92     115 ..      92     117 .. 0.93
   3 ?   -2.3   0.1      0.27   3.6e+03      15      24 ..     127     136 ..     123     138 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.54
   PF03941.10  5 Ddeddded 12
                 Dd++dd d
  MMETSP0890-20130614|40534_1 75 DDSTDDGD 82
                 99999976 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.2e-06
   PF03941.10   1 einSDdedddedeprkplpsWAes 24 
                  e+n Dd+d++ ++  +++psWA++
  MMETSP0890-20130614|40534_1  92 EVNPDDDDESYHTTAVKFPSWASG 115
                  7899******************97 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.27
   PF03941.10  15 rkplpsWAes 24 
                  +k+   WA++
  MMETSP0890-20130614|40534_1 127 KKDAKHWAKG 136
                  6778899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       468  (0.0342305); expected 273.4 (0.02)
Passed bias filter:                      360  (0.0263312); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.69
# Mc/sec: 788.37
//
Query:       MMETSP0890-20130614|40547_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-06   26.3   0.0    4.6e-06   25.6   0.0    1.3  1  PF01564.12 Spermine/spermidine synthase
     0.0046   17.4   0.0     0.0085   16.5   0.0    1.5  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.044   13.1   0.0    1.3  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
      0.035   13.0   0.0      0.051   12.4   0.0    1.2  1  PF00398.15 Ribosomal RNA adenine dimethylase
       0.14   11.3   0.1       0.26   10.4   0.1    1.4  1  PF04816.7  Family of unknown function (DUF633)


Domain annotation for each model (and alignments):
>> PF01564.12  Spermine/spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.7e-09   4.6e-06      57     188 ..      27     158 ..      19     167 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.7e-09
                  TTCHHHHHHHHHHHHHHSSS--EEEEE------HHHHHTTSTT-.SEEEEEES-HHHHHHHHHH-HHHH--TT-TTEEEEE----HHHHTCSS.-BSEEEESSS-..-.---GGG...CCSHHHHHHHHHHB-----EE CS
   PF01564.12  57 kdefaykemivhvplllhpnpkeVLiiGGgDGgvlrelvkhntv.ekitlvdiDqkvidfsrkflpslaislndervkvvigdgfkflkaylvrkfDvvivdstd..p.vgpaen...lFskefydllkkalkedGviv 188
                  ++  a ++ ++ + +l++    ++  iG g G ++  l+ +++  +k t++++Dq ++ +++  ++   ++      +++++dg +f  ++ + ++D+++vd  +  p vg +     + +++++  l++ lk++G+iv
  MMETSP0890-20130614|40547_1  27 RYHAAITSGLAAFSKLTK--DSNICLIGLGGGALASTLLDLSQRqTKLTVIELDQVIVSVAQDWFGFRTED----TKQILVTDGLTFFDEIHD-NYDAIVVDVDAknPgVGLSCPpvtFLQSDYLCKLARSLKNGGLIV 158
                  444555555555555555..577888888888888888888754489******************998877....557899************.******99877634344444477577899999**********998 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.1e-06    0.0085       2     110 ..      45     160 ..      44     162 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.1e-06
    PF12847.2   2 gkrilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaksldleeriellqgda.keelsllerfDavllkg.l............tldallaldeprrvlealpkllkpggrlvie 110
                  + +i+ +G G G l+  l++  +++ k++ +++++  +++a++     + e+  ++l  d  ++ +++ +++Da++++               t      l  +  +l +l++ lk+gg +v +
  MMETSP0890-20130614|40547_1  45 DSNICLIGLGGGALASTLLDlSQRQTKLTVIELDQVIVSVAQDWF-GFRTEDTKQILVTDGlTFFDEIHDNYDAIVVDVdAknpgvglscppvT-----FL--QSDYLCKLARSLKNGGLIVYN 160
                  567888999***999999997779999******************.87777777777777779***********99977556666555332221.....22..333477888999999999876 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.044      67     153 ..      38     125 ..      13     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
                  HHTT--TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE--------GGG.--BSEEEESSB-S CS
   PF01135.14  67 ellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeek.aPYdaihvgaaap 153
                   + +l+k +++  +G G G l+  l  l ++++++  ie  + +v+ a+        +  ++ v+DG + ++e    Ydai+v + a+
  MMETSP0890-20130614|40547_1  38 AFSKLTKDSNICLIGLGGGALASTLLDLSQRQTKLTVIELDQVIVSVAQDWFGFRTEDTKQILVTDGLTFFDEIhDNYDAIVVDVDAK 125
                  3345999******************************************9988888888888999******996268*****998776 PP

>> PF00398.15  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.8e-05     0.051      24      88 ..      38     107 ..      28     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
   PF00398.15  24 dklnlqekdtvlEigpGkGalTeeLakra...kqvvalEidsklvkrlqkkla..kdenvevvhqDflkf 88 
                    ++l+++ ++  ig G Gal   L ++     +++++E+d+  v + q+ +    ++  +++ +D l+f
  MMETSP0890-20130614|40547_1  38 AFSKLTKDSNICLIGLGGGALASTLLDLSqrqTKLTVIELDQVIVSVAQDWFGfrTEDTKQILVTDGLTF 107
                  5678999999999*********999888777799****************98887788888888998887 PP

>> PF04816.7  Family of unknown function (DUF633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   9.5e-05      0.26      28      91 ..       6      72 ..       2      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.5e-05
                 ------HHHHHHHHHH---TTTEEE------TT--GGG---EEEE------HHHHHH...H------ CS
    PF04816.7 28 evnkgplesavknvkkskleekievrlgdGlavleeedeidviviaGmGgllIaeIL...eegkekL 91
                 +v +   e  +k   k++l ++ +    +Gla++++  + ++i + G+Gg  +a+ L   ++++ kL
  MMETSP0890-20130614|40547_1  6 NVLQTEVEVSKKGAIKNTLVSRYHAAITSGLAAFSKLTKDSNICLIGLGGGALASTLldlSQRQTKL 72
                 566666677777788999******************************9876665431113444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       359  (0.026258); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.40s 00:00:00.94 Elapsed: 00:00:01.40
# Mc/sec: 419.36
//
Query:       MMETSP0890-20130614|40545_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-30  103.4   0.1    6.4e-30  102.5   0.0    1.5  1  PF03366.11 YEATS family
    0.00016   21.0   1.6    0.00054   19.3   0.0    2.1  2  PF09712.5  Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
  ------ inclusion threshold ------
       0.29   10.6   5.2      0.073   12.6   0.5    2.1  2  PF13958.1  Toxin ToxN, type III toxin-antitoxin system


Domain annotation for each model (and alignments):
>> PF03366.11  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   1.4e-33   6.4e-30       1      81 [.      82     161 ..      82     164 .. 0.97

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 1.4e-33
   PF03366.11   1 thkwtvfvrgldsedlskfikkVtFkLhetfanpvrvvkkpPfevtetGWgeFeiqikiqfkeeskekpltlqhdLklhqe 81 
                  th+wt+fvrg++ edls+fi+kV+FkLh++fa+pvr v+++Pf+vte+GWgeFe  i+++fk+   e+p++l+h +kl ++
  MMETSP0890-20130614|40545_1  82 THEWTLFVRGARGEDLSYFIDKVVFKLHPSFAQPVREVTEAPFQVTEKGWGEFEAAIRLHFKDP-TERPVELSHVVKLYSS 161
                  8*************************************************************97.9***********9876 PP

>> PF09712.5  Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.2e-07   0.00054     225     269 ..     177     221 ..     174     233 .. 0.94
   2 ?   -0.1   0.7     0.093   4.2e+02      79      95 ..     281     297 ..     245     354 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.2e-07
    PF09712.5 225 EeaYaevvaseeyaqiygrLvnAlmrlkkalqqvvdelleslnlP 269
                   ++Y evv++e y+  y +Lvn ++  k++ ++ +d++ +++ lP
  MMETSP0890-20130614|40545_1 177 SQVYDEVVFTEPYEDFYKSLVNDQTITKRKKKETIDQNQDKIALP 221
                  589***************************************999 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.093
    PF09712.5  79 eeqaaaeleqvaaqfag 95 
                  e ++a++ +q ++q  +
  MMETSP0890-20130614|40545_1 281 EAEKARQFQQQQQQQRQ 297
                  22222222222222221 PP

>> PF13958.1  Toxin ToxN, type III toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   1.6e-05     0.073      83     154 ..     169     240 ..     150     249 .. 0.82
   2 ?   -0.6   0.2      0.18   8.4e+02     103     144 ..     258     297 ..     244     302 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
                  GGG-EEE-GGGEEE-------S-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-....--------HHHH CS
    PF13958.1  83 lnnMiPvpdselkeidikkeedekykkLlqkqlkfikknkekikkkaeklykkvikkkkekikkrccdfklL 154
                   n+  Pv+++++ e+ +++  ++ yk+L+++q    +k+ke+i ++ +k+   ++++  +k+  +  d + L
  MMETSP0890-20130614|40545_1 169 ANESNPVVSQVYDEVVFTEPYEDFYKSLVNDQTITKRKKKETIDQNQDKIALPITTHPLQKYFYHFDDAQDL 240
                  57777*****************************************99998777777766665555555555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.18
                  -S-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-....-- CS
    PF13958.1 103 edekykkLlqkqlkfikknkekikkkaeklykkvikkkkeki 144
                  +d  y+  l +q+ ++k+  ++   +aek ++ +++++++  
  MMETSP0890-20130614|40545_1 258 KDAVYR--LDHQIGVCKQMDQNRAAEAEKARQFQQQQQQQRQ 297
                  555554..6778888888777777777777777776666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1375  (0.100571); expected 273.4 (0.02)
Passed bias filter:                      442  (0.0323288); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.41s 00:00:01.17 Elapsed: 00:00:00.80
# Mc/sec: 1117.30
//
Query:       MMETSP0890-20130614|40540_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       246  (0.017993); expected 273.4 (0.02)
Passed bias filter:                      211  (0.015433); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.41s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 236.06
//
Query:       MMETSP0890-20130614|40552_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.40s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 401.55
//
Query:       MMETSP0890-20130614|40550_1  [L=1226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-17   61.5 131.4    0.00024   21.0   6.8   10.1 10  PF07974.8  EGF-like domain
    3.9e-05   24.4   8.2        1.9    9.4   0.3    5.4  5  PF04151.10 Bacterial pre-peptidase C-terminal domain
  ------ inclusion threshold ------
      0.012   15.4   1.3      0.012   15.4   0.9    9.0 10  PF12661.2  Human growth factor-like EGF


Domain annotation for each model (and alignments):
>> PF07974.8  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   5.3   2.9e-05      0.13       1      27 [.     130     151 ..     125     154 .. 0.82
   2 !   19.7   6.3   1.4e-07   0.00063       7      29 ..     287     309 ..     283     310 .. 0.90
   3 ?    1.8   4.0     0.052   2.4e+02       1      26 [.     461     488 ..     459     494 .. 0.75
   4 !   10.1   3.6   0.00013       0.6       6      32 .]     645     671 ..     630     671 .. 0.82
   5 ?   -3.2   0.2         2   9.2e+03      22      32 .]     854     864 ..     854     864 .. 0.90
   6 !   13.2   3.6   1.4e-05     0.065       5      32 .]     885     918 ..     880     918 .. 0.89
   7 !   13.4   3.2   1.3e-05     0.058       7      32 .]     942     973 ..     934     973 .. 0.88
   8 !   21.0   6.8   5.3e-08   0.00024       1      32 []     977    1006 ..     976    1006 .. 0.93
   9 !   13.3   4.2   1.4e-05     0.064       1      32 []    1010    1050 ..    1010    1050 .. 0.90
  10 !   11.7   5.8   4.2e-05      0.19       1      32 []    1054    1085 ..    1054    1085 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.9e-05
    PF07974.8   1 CsadgliCgghGtCvkqcgkCvCdsgy 27 
                  C    ++C+ghG+C    g C+C+  +
  MMETSP0890-20130614|40550_1 130 CL---NDCSGHGKCF--EGLCDCEETW 151
                  43...46********..9*****9988 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.4e-07
    PF07974.8   7 iCgghGtCvkqcgkCvCdsgyqG 29 
                  +C+g+G C++++g C C++g+ G
  MMETSP0890-20130614|40550_1 287 DCNGQGECDQSTGDCRCNDGWAG 309
                  6********88**********99 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.052
    PF07974.8   1 Csad.gliCgg..hGtCvkqcgkCvCdsg 26 
                  C+++ + +C g  +  C+ ++g+C C+  
  MMETSP0890-20130614|40550_1 461 CPSTiNGFCDGllN-VCDFNTGNCLCPTD 488
                  77777777777744.88888******986 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00013
    PF07974.8   6 liCgghGtCvkqcgkCvCdsgyqGktC 32 
                  ++C++ G C ++ g+C+Cd g+  ++C
  MMETSP0890-20130614|40550_1 645 DECSAAGMCIRELGRCDCDEGHVLDDC 671
                  46**********99******9865555 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 2
    PF07974.8  22 vCdsgyqGktC 32 
                  +C  g+ G +C
  MMETSP0890-20130614|40550_1 854 SCAPGFLGFKC 864
                  5999****999 PP

  == domain 6    score: 13.2 bits;  conditional E-value: 1.4e-05
    PF07974.8   5 gliCgghGtCvkq......cgkCvCdsgyqGktC 32 
                  ++iCgg G C           +C C++ ++G++C
  MMETSP0890-20130614|40550_1 885 DQICGGSGVCSFAndddfdVTVCACSAHFTGPDC 918
                  589********8899****779************ PP

  == domain 7    score: 13.4 bits;  conditional E-value: 1.3e-05
    PF07974.8   7 iCgghGtCvkq........cgkCvCdsgyqGktC 32 
                  +Cgg+G+Cv+            C+Cd g+ G +C
  MMETSP0890-20130614|40550_1 942 VCGGRGKCVTIeldgeliaD--CDCDEGFGGSSC 973
                  6********779*9999555..***********9 PP

  == domain 8    score: 21.0 bits;  conditional E-value: 5.3e-08
    PF07974.8    1 CsadgliCgghGtCvkq..cgkCvCdsgyqGktC 32  
                   C+    +Cg+hGtC+    ++kCvCd gy G+ C
  MMETSP0890-20130614|40550_1  977 CE----DCGNHGTCEWLdsTKKCVCDPGYVGDLC 1006
                   54....5********99****************9 PP

  == domain 9    score: 13.3 bits;  conditional E-value: 1.4e-05
    PF07974.8    1 Csad.gliCgghGtCvkq........cgkCvCdsgyqGktC 32  
                   C+   g+iC+ +G C  +           C+C+ gy+G++C
  MMETSP0890-20130614|40550_1 1010 CPMYsGDICSDRGECILThaydgsplRAACECNYGYYGDSC 1050
                   66555689********99********778************ PP

  == domain 10    score: 11.7 bits;  conditional E-value: 4.2e-05
    PF07974.8    1 CsadgliCgghGtCvkq...cgkCvCdsgyqGktC 32  
                   C++d   C+ghG C        +C+C   y G+ C
  MMETSP0890-20130614|40550_1 1054 CPQD---CSGHGACIAVssvEARCKCFTAYGGDAC 1085
                   9864...********7799*889***********9 PP

>> PF04151.10  Bacterial pre-peptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.3   0.00041       1.9       4      69 ..     184     258 ..     181     259 .. 0.65
   2 !    8.7   0.1   0.00066         3      53      69 ..     413     429 ..     384     430 .. 0.85
   3 ?    1.2   0.0      0.15   6.8e+02      56      68 ..     594     606 ..     540     607 .. 0.80
   4 ?   -3.6   0.0         3   1.4e+04      28      65 ..     676     716 ..     668     719 .. 0.62
   5 !    5.1   0.0    0.0087        40      58      69 ..     807     818 ..     784     819 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00041
                  EEEE--S----.EEEE.EEETSSEEE..EEEEEET.CSSSS....CCCE-...EB.-SEEEEEESSS----EEEEEE CS
   PF04151.10   4 vykfevpaggs.ltid.idggsgdld..Lylldgngpslaa....ydans...apsgndeyieftapqaGtYyvaVs 69 
                  +y+f +++++s l +  +d+g  d+d  L l  +  p+l+     y+++    +  ++  y++   +++GtYyv+V+
  MMETSP0890-20130614|40550_1 184 YYQFRLEESSSfL-VElVDWGGVDADprLMLASDTVPTLSYflgsYNDWFnwyYDCSDIHYLR-GELAPGTYYVGVT 258
                  899****999955.5524777778887777766666766554444333323433333457777.669********96 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00066
                  EEEESSS----EEEEEE CS
   PF04151.10  53 yieftapqaGtYyvaVs 69 
                  +++ t++++GtYy++V+
  MMETSP0890-20130614|40550_1 413 LVNSTNLNSGTYYIGVY 429
                  567799**********9 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.15
                  ESSS----EEEEE CS
   PF04151.10  56 ftapqaGtYyvaV 68 
                   t   aG++y+aV
  MMETSP0890-20130614|40550_1 594 LTTQGAGQWYIAV 606
                  45579*******9 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 3
                  EEEEEET.CSSSSCCCE-..EB.-SEEEEEESSS----E.E CS
   PF04151.10  28 Lylldgngpslaaydans..apsgndeyieftapqaGtY.y 65 
                  ++ l++      +y+a++  ++ ++d+ + ++  ++  + y
  MMETSP0890-20130614|40550_1 676 IFALYPGSFFPWDYSAPPhsESKDDDSAVLIPPIAPDDWvY 716
                  55555554566778888866555566766666666665555 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.0087
                  SS----EEEEEE CS
   PF04151.10  58 apqaGtYyvaVs 69 
                  ap++G Yy++V+
  MMETSP0890-20130614|40550_1 807 APEPGMYYIGVY 818
                  69*********9 PP

>> PF12661.2  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.7   7.6e+03       2       6 ..     145     149 ..     144     151 .. 0.73
   2 ?    5.8   0.2    0.0032        14       2      10 ..     301     309 ..     300     310 .. 0.91
   3 ?   -2.2   0.7       1.2   5.3e+03       2       5 ..     483     486 ..     482     487 .. 0.85
   4 ?   -1.2   0.2      0.53   2.4e+03       2       7 ..     660     665 ..     659     665 .. 0.86
   5 ?    0.7   0.1      0.14   6.3e+02       4      10 ..     855     861 ..     854     861 .. 0.85
   6 ?   10.6   0.9   9.9e-05      0.45       1      13 []     906     918 ..     906     918 .. 0.96
   7 ?   -2.8   0.3       1.8   8.4e+03       3       7 ..     921     925 ..     921     925 .. 0.90
   8 ?    3.6   2.0     0.016        75       2      13 .]     962     973 ..     961     973 .. 0.94
   9 ?   15.4   0.9   2.7e-06     0.012       1      13 []     994    1006 ..     994    1006 .. 0.97
  10 ?    8.2   2.1   0.00054       2.4       2      13 .]    1039    1050 ..    1038    1050 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.7
    PF12661.2   2 CqCpp 6  
                  C C  
  MMETSP0890-20130614|40550_1 145 CDCEE 149
                  ***76 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0032
    PF12661.2   2 CqCppGyTG 10 
                  C+C+ G+ G
  MMETSP0890-20130614|40550_1 301 CRCNDGWAG 309
                  *******88 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.2
    PF12661.2   2 CqCp 5  
                  C Cp
  MMETSP0890-20130614|40550_1 483 CLCP 486
                  ***9 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.53
    PF12661.2   2 CqCppG 7  
                  C C+ G
  MMETSP0890-20130614|40550_1 660 CDCDEG 665
                  ***988 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.14
    PF12661.2   4 CppGyTG 10 
                  C pG+ G
  MMETSP0890-20130614|40550_1 855 CAPGFLG 861
                  *****76 PP

  == domain 6    score: 10.6 bits;  conditional E-value: 9.9e-05
    PF12661.2   1 kCqCppGyTGdnC 13 
                  +C C +++TG++C
  MMETSP0890-20130614|40550_1 906 VCACSAHFTGPDC 918
                  6************ PP

  == domain 7    score: -2.8 bits;  conditional E-value: 1.8
    PF12661.2   3 qCppG 7  
                  qCp G
  MMETSP0890-20130614|40550_1 921 QCPEG 925
                  8**98 PP

  == domain 8    score: 3.6 bits;  conditional E-value: 0.016
    PF12661.2   2 CqCppGyTGdnC 13 
                  C C+ G+ G  C
  MMETSP0890-20130614|40550_1 962 CDCDEGFGGSSC 973
                  *********998 PP

  == domain 9    score: 15.4 bits;  conditional E-value: 2.7e-06
    PF12661.2    1 kCqCppGyTGdnC 13  
                   kC+C+pGy Gd C
  MMETSP0890-20130614|40550_1  994 KCVCDPGYVGDLC 1006
                   7***********9 PP

  == domain 10    score: 8.2 bits;  conditional E-value: 0.00054
    PF12661.2    2 CqCppGyTGdnC 13  
                   C+C+ Gy Gd C
  MMETSP0890-20130614|40550_1 1039 CECNYGYYGDSC 1050
                   **********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1226 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       618  (0.0452019); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        71  (0.0051931); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.79u 0.38s 00:00:02.17 Elapsed: 00:00:01.90
# Mc/sec: 1546.28
//
Query:       MMETSP0890-20130614|40567_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-16   57.7   0.0    2.2e-15   56.5   0.0    1.6  1  PF01546.23 Peptidase family M20/M25/M40
    9.9e-05   21.9   0.0    0.00024   20.7   0.0    1.6  1  PF07687.9  Peptidase dimerisation domain
    0.00094   18.8   0.0     0.0022   17.6   0.0    1.6  1  PF04389.12 Peptidase family M28
  ------ inclusion threshold ------
      0.057   12.0   0.0        0.1   11.2   0.0    1.4  1  PF05343.9  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> PF01546.23  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   6.5e-19   2.2e-15       1     169 [.      95     522 ..      95     524 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 6.5e-19
                  EEEEES-BBS...GCGSS.................EE----HCCHHHHHHHHHHHHHHHH..HCCC-SCEEEEEEESTTTTT-SSSSHHHHHHEEEEEECCEEHHHHTCSSE..............................................................................................................................................................................................................................................EHHHH.HHHHHHHHHHCCCG..CEEEEEE----THHHHTT..TSEEEEEEE--B-TTTTSTT--B-CCHHHHHHHHHHHHH CS
                  xxxxxxxxxx..xxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................................................................................................................................................................................................xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01546.23   1 llrgHmDvVp..eenkwk.................lygrGaddmkggllaalaalealae..agtklkgtvellftpdEEggsrggakalieaalglhidlgivgepseedg..............................................................................................................................................................................................................................................tendaelvqalekaaeelgl..kveplvsgggtdasfiar.vglgfpmiglgpgngtaHspnEkvdlddlekgievlaell 169
                  +++gH D V     +  +                   + G++ +    ++++aal+ l+e  +   +++++ellft dEE g + ga  l ++al l+  +++ ++ +e +                                                                                                                                                                                                                                               ++n++ + ++++++ +++ +  ++e+ ++++g +++++    ++++++i++gp + +aH+p+E++dl  +  + ++l +ll
  MMETSP0890-20130614|40567_1  95 IIQGHVDIVAekTPES-ThdffnhgidlkiengwlKSAKGTTLGSDNGVGVAAALALLNEntQINSRRPPLELLFTLDEERGLK-GALGLDAKALQLEGRTLLNLDTEEWESvyigcagggdsrfriplvrsnnvnyqdchfyqlsishatgghsgididknrcnaiellaelsslllheglvsglvsirggdkrnaipreatailtlmpnqsqsslfqavqalneeskqkysatdpnlkveiapaaddigapledvstksilsllvqsglkrgalkmsesitdlvetssnlasvtmkfdekseffeiccstrssvasqiedvradlaravtsvhgivieqppaytgwqpNMNSR-VLNLVKQCFQAQNNgkQPEVKAIHAGLECGMLIAkIAPDLDCISFGPTIVDAHTPDERLDLITVDPFFALLLNLL 522
                  5899******531222.2356777888999999996677776555555555555555554448889999*************98.88888888666666666666655555588888888888888888888888899999999999999999999999**********************************************************************************************************************************************************************************************888888.********9997779999***************955************************999999888888776 PP

>> PF07687.9  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.9e-08   0.00024      14     105 ..     241     321 ..     233     325 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 6.9e-08
    PF07687.9  14 kgkagHsg..apgaganAieklarllqsledeegpiaeerslgrttlnvtgiegGtaknvipdeaeakidiRllpgedpeevlkeieeilekea 105
                  +  +gHsg    ++  nAie+la+l + l +e           ++   + +i+gG+++n+ip+ea+a +++   p+++  ++ ++++++ e+ +
  MMETSP0890-20130614|40567_1 241 HATGGHSGidIDKNRCNAIELLAELSSLLLHE-----------GLVSGLVSIRGGDKRNAIPREATAILTLM--PNQSQSSLFQAVQALNEESK 321
                  66789999855566679*******99999999...........79999**********************96..77888888888887766655 PP

>> PF04389.12  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.4e-07    0.0022      23      87 ..     138     199 ..      93     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.4e-07
                  TTTT---HHHHHHHHHHHH.TT---SCEEEEEEESSTT------HHHHHCHHHHHTCEEEEE--S- CS
   PF04389.12  23 tDnAsgvaalleiarvlaa.qgsepkrgvrflffdgEEdgllGSralaenpkaeldkiravlnlDm 87 
                   Dn++gvaa l ++   ++ ++++p   +++lf+  EE gl G+  l    ka   + r++lnlD 
  MMETSP0890-20130614|40567_1 138 SDNGVGVAAALALLNENTQiNSRRP--PLELLFTLDEERGLKGALGLD--AKALQLEGRTLLNLDT 199
                  5******************666666..*****************9998..4567788888888886 PP

>> PF05343.9  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05       0.1     133     176 ..     138     182 ..      77     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.9e-05
                  HHHHHHHHHHHHHHHHHCTSS.S.SEEEEEEESTTT------HHH CS
    PF05343.9 133 lDdragvavllellkelkeeele.atvylvasvqEEvGlrGakts 176
                   D+ +gva++l+ll+e  + +     + l+++  EE Gl+Ga  +
  MMETSP0890-20130614|40567_1 138 SDNGVGVAAALALLNENTQINSRrPPLELLFTLDEERGLKGALGL 182
                  59*************99998877799***************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       419  (0.0306466); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.40s 00:00:01.27 Elapsed: 00:00:01.20
# Mc/sec: 1056.39
//
Query:       MMETSP0890-20130614|40572_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-45  152.8   0.0    1.1e-44  152.2   0.0    1.3  1  PF04056.9  Ssl1-like
    1.7e-14   54.1   0.0    2.5e-14   53.6   0.0    1.2  1  PF13519.1  von Willebrand factor type A domain
    6.1e-11   42.0  18.8    9.1e-11   41.4   9.4    2.7  2  PF07975.7  TFIIH C1-like domain
  ------ inclusion threshold ------
       0.26   10.8  19.3        0.4   10.2   1.0    2.4  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
       0.43   10.3  19.8       0.56    9.9   0.2    3.4  2  PF12773.2  Double zinc ribbon


Domain annotation for each model (and alignments):
>> PF04056.9  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   4.1e-48   1.1e-44       1     193 []      25     226 ..      25     226 .. 0.93

  Alignments for each domain:
  == domain 1    score: 152.2 bits;  conditional E-value: 4.1e-48
    PF04056.9   1 vlDlsrameekdlkpsrlavviklleefveeffdqnPisqlgliavkdkkaekltelsGnprkhikaLkslrev...eakgepsLqnaLelalasLkkvpshasrevliifsslstcDPgdiyetidelkkekirvsvigLsaevavckelaketkgtysvvldethlkelllehvsPppaakskkeas......likmGfP 193
                  vlD s+++ ++d+ p+r+ v+i+ l efv +f   nP+s +g++   ++ a ++++ls ++r+h+k+L+++ ++   +++g +sL  a++ al+ L+  p ++ re+lii+ss+ + D + i e +d +++ k+r+s i+L ae    k+++k+t+gty+v+ld +hlk+ll++  +Pp   k +++ +      l++mGfP
  MMETSP0890-20130614|40572_1  25 VLDASKSAGNRDFFPTRFGVTIRSLMEFVAQFLKENPVSTMGIVCAGEGSAYRISRLSSSIRTHVKSLEEILHKtrfSPRGSFSLVAAIDEALQLLRGTPDYGYREILIIVSSFGSLDATSISESLDLCQNFKVRISFISLVAETYQFKQVSKKTNGTYQVALDRSHLKKLLTQYLIPPKLVKDHTSENldqlqpLVHMGFP 226
                  89******************************************************************998654222789***************************************************************************************************98877655442233337*****9 PP

>> PF13519.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0     9e-18   2.5e-14       2     171 ..      22     198 ..      21     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 9e-18
    PF13519.1   2 lvlvlDvSgSMnaedvsptrldaakaalkdlldel....pgdrvglvafsg.saelvapltsdraalkaalnsldprl..mpgggtnlaaalalalellakad..grraaivlvtD.Gednssdi.eaasalkragikiyvvgvgsdegaeallkelaeatggryfdassdaeeleaalre 171
                  lv vlD+S S   +d  ptr+ ++  +l ++++++    p +++g+v  ++ sa+ ++ l+s+ ++    l+++  ++  +p+g+ +l aa+++al+ll++ +  g r  +++v+  G  ++  i e+++ +++ +++i ++++  ++++   +k+++++t+g+y  a  d++ l+++l++
  MMETSP0890-20130614|40572_1  22 LVCVLDASKSAGNRDFFPTRFGVTIRSLMEFVAQFlkenPVSTMGIVCAGEgSAYRISRLSSSIRTHVKSLEEILHKTrfSPRGSFSLVAAIDEALQLLRGTPdyGYREILIIVSSfGSLDATSIsESLDLCQNFKVRISFISLVAETYQ---FKQVSKKTNGTYQVA-LDRSHLKKLLTQ 198
                  799*************************88888844444888999888877588999999998888888888876665449********************9977888999999988876655553799999***************996...***********9999.999999999986 PP

>> PF07975.7  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.046   1.3e+02      18      29 ..     248     259 ..     237     272 .. 0.70
   2 !   41.4   9.4   3.3e-14   9.1e-11       1      50 [.     321     367 ..     321     368 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.046
    PF07975.7  18 dssvyrCekCkn 29 
                  ++++y+C++C +
  MMETSP0890-20130614|40572_1 248 TTTTYTCPRCAT 259
                  3789******86 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 3.3e-14
    PF07975.7   1 eCygCqkklkkkakkkkdssvyrCekCknvFCidCDvFiHesLhnCpgCe 50 
                  +C+gC   l+ + k+   + +y+C++C ++FC  CD FiH+ Lh CpgC 
  MMETSP0890-20130614|40572_1 321 TCFGCFDPLPLQVKD---ACTYTCPRCSTTFCATCDDFIHDVLHVCPGCD 367
                  5*********97555...78*****************************7 PP

>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.0   0.00015       0.4      24      46 ..     252     274 ..     250     278 .. 0.89
   2 ?    5.5   7.3    0.0044        12       2      46 ..     319     369 ..     318     371 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
    PF13920.1  24 clCeeCaerllkrkkkCpiCrsp 46 
                  ++C  Ca+r+ +    Cp+C  p
  MMETSP0890-20130614|40572_1 252 YTCPRCATRVPRIPIDCPVCELP 274
                  58******************866 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0044
    PF13920.1   2 kktCvvCle....readvlll...pCgHlclCeeCaerllkrkkkCpiCrsp 46 
                  k+tC  C++    + +d++ +   +C    +C++C + +++  + Cp C s+
  MMETSP0890-20130614|40572_1 319 KTTCFGCFDplplQVKDACTYtcpRCSTT-FCATCDDFIHDVLHVCPGCDSS 369
                  789******76663444444401146666.*******************875 PP

>> PF12773.2  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0002      0.56      14      36 ..     253     272 ..     242     283 .. 0.62
   2 ?   -2.6  10.0       1.6   4.5e+03      12      49 ..     319     366 ..     312     375 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0002
    PF12773.2  14 fCpqCgaklkeataeevlCpsCg 36 
                   Cp+C ++++   + ++ Cp C+
  MMETSP0890-20130614|40572_1 253 TCPRCATRVP---RIPIDCPVCE 272
                  4666666666...3355566665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.6
    PF12773.2  12 arfCpqCgaklk..........eataeevlCpsCgesvspkarfCpnC 49 
                     C  C  +l+           ++ ++ +C +C+  ++    +Cp C
  MMETSP0890-20130614|40572_1 319 KTTCFGCFDPLPlqvkdactytCPRCSTTFCATCDDFIHDVLHVCPGC 366
                  566777777777764444433322222233444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      431  (0.0315243); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.39s 00:00:01.14 Elapsed: 00:00:00.96
# Mc/sec: 1028.44
//
Query:       MMETSP0890-20130614|40577_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-26   92.7   0.1    1.9e-26   92.6   0.1    1.0  1  PF00149.23 Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> PF00149.23  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.1   1.4e-30   1.9e-26       2      91 ..      29     112 ..      28     113 .] 0.98

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 1.4e-30
                  EEEEEEEBTBBHHHHHHHHHHHHHHHHHTTTSEEEEE-TTSSGHHCHHHHHHHHHHCCHHHHTTSCEEEE---TTTHHHHHHHHHSTTHH CS
   PF00149.23   2 rilvigDlHgglddleglllilleiaaeekpdlvlflGDlvdrgdwssetlalldylvlklllpipvfllrGNHEsdpgnsaygflkeqa 91 
                  +++++gD+Hg+++dl    l+l++i ++ +  +++flGD+vdrg++s+e++ ll  l+lk++ p++v llrGNHEs++++++ygf++e+ 
  MMETSP0890-20130614|40577_1  29 PVTICGDIHGQFGDL----LELFRICGKVPEKNYVFLGDYVDRGRDSLEVFELL--LCLKVRWPNHVTLLRGNHESRQITQVYGFYDECI 112
                  89*************....***********************************..********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       255  (0.0186513); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.35s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 410.29
//
Query:       MMETSP0890-20130614|40578_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-31  110.2   1.5    1.7e-31  109.7   1.0    1.2  1  PF12697.2  Alpha/beta hydrolase family
    1.4e-14   53.8   0.0    4.9e-14   52.1   0.0    1.8  1  PF12695.2  Alpha/beta hydrolase family
    2.4e-08   33.6   0.0    7.8e-08   32.0   0.0    1.8  1  PF00561.15 alpha/beta hydrolase fold
     0.0014   18.0   0.3        8.9    5.5   0.0    3.1  3  PF02230.11 Phospholipase/Carboxylesterase
     0.0018   17.6   0.0     0.0047   16.2   0.0    1.7  2  PF00756.15 Putative esterase
     0.0054   15.0   0.1     0.0075   14.5   0.0    1.1  1  PF11339.3  Protein of unknown function (DUF3141)
     0.0069   16.0   0.0     0.0069   16.0   0.0    1.8  2  PF05728.7  Uncharacterised protein family (UPF0227)
  ------ inclusion threshold ------
      0.023   13.0   0.2        1.9    6.7   0.0    2.1  2  PF05448.7  Acetyl xylan esterase (AXE1)
       0.03   14.0   0.1      0.074   12.8   0.0    1.6  1  PF12146.3  Putative lysophospholipase
       0.12   11.5   0.0       0.37    9.8   0.0    1.8  2  PF00326.16 Prolyl oligopeptidase family
       0.13   11.7   0.0       0.28   10.5   0.0    1.6  1  PF01764.20 Lipase (class 3)


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   1.0   1.4e-34   1.7e-31       1     222 [.      51     300 ..      51     304 .. 0.71

  Alignments for each domain:
  == domain 1    score: 109.7 bits;  conditional E-value: 1.4e-34
                  EEE------------HHHHHHT..TTSEEEEE-----------S.......S--HHHHHH....HHHHHHHH--.--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH----....--.H..HHHHH.-----HHHHHH........--GGGG....GG.............................------HHHHTT--S-EEEEE-----HHH.HHHHHHHHHHSTTEEEEE---SSSS-...-H CS
    PF12697.2   1 vvllHGlggsaeswrplaeaLa..agyrvvapDlpGhGrSdrppd....ydpdtledlaa....dlaalldalglrpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagraaalrdla.arafarlf.dgdelealvra........daaalaellraa.............................lldadlrealarldvPvlviageaDrvvp.peearrlaealpgarvvvlpgagHllfleap 222
                  +v+lHG+g++ ++w++ + a+a   g++++a+D+ G+GrS ++++     +       a      l+++l+++  +++vlvG SlGg++a+++aa+rpdlv+g+ l+++++++ +    +++ +++ + l +   ++ ++  +++++ ++ +++++++l+++        d          +                             ++d  l +a+   +vP  +i+g++D++v+  + +r++++    + +++l  agH+++ e p
  MMETSP0890-20130614|40578_1  51 IVFLHGFGVGEFHWENNQAAIAiaTGRTCYALDWIGQGRSWPDESdglsVG-------AKiwqyQLIQFLEQVVQERAVLVGNSLGGFIATFVAASRPDLVAGVGLLNATPFWGF---VSRNFPFWNAQLPA---PRTAFLlGSTWFNALrNERTVRSLLKQvyatpdslDD---------QlvqriiqaaqsekgpdiftsiifnpppadPFDTALQTAYFDHGVPFALIYGKDDPWVTtLWGQRAFRRLQQTVPYYELTPAGHCVHHETP 300
                  8***************999888868***************99875333322.......22334478999999999************************************8777...43333444433333...3222221334333332355555555444443444322.........12223333347778999999999998775555555555555558***************8777777777777899999999******9988 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     4e-17   4.9e-14       1     142 []      50     294 ..      50     294 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 4e-17
    PF12695.2   1 lvvlvhGaggdssaye.plaealakrgfavvavdlpghgas..egaa...........aakrvlaadlldleriilvGhSlGGgvalelagrd.drvkglvllap.....f.....pd.gedlakltl....................................................................................pvllihGtrDgvvppeeaeklakalpgdaelvviegasHf 142
                  ++v++hG+g+   ++e + a +  + g  ++a+d+ g+g+s  ++++           ++ ++l ++  + er +lvG SlGG +a+ +a+++ d v+g+ ll++     f     p  +++     l                                                                                    p+ li+G++D +v+  + ++++++l++++ ++++  a+H+
  MMETSP0890-20130614|40578_1  50 PIVFLHGFGVGEFHWEnNQAAIAIATGRTCYALDWIGQGRSwpDESDglsvgakiwqyQLIQFL-EQVVQ-ERAVLVGNSLGGFIATFVAASRpDLVAGVGLLNAtpfwgFvsrnfPFwNAQ-----LpaprtafllgstwfnalrnertvrsllkqvyatpdslddqlvqriiqaaqsekgpdiftsiifnpppadpfdtalqtayfdhgvPFALIYGKDDPWVTTLWGQRAFRRLQQTVPYYELTPAGHC 294
                  59*************96777777777**************986333367788888888888888.77665.9*******************8878899999999866544143333222222.....2333345677777788888888888899999999999999999999999999999999999999999999999999999999999***************************************6 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   6.2e-11   7.8e-08       2     116 ..      78     198 ..      77     304 .. 0.67

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 6.2e-11
                  EEEEEE--------E...S.GGGGSHHHHHHHHHHHHHHSTSSSEEEEE-B---HHHHHHHHHCGGGEEEEEEESB--.....HHSHCSHSTTCHC...HHHHHHHHCCHHHHHHHHHHHCSC CS
   PF00561.15   2 dviglDlrGvgySspaggpelphyttddlardleavldalglkkltlvGhSmGGmialayaaeypdrvkamvllgtva.....vlsdglssdvlnr...gstltlladnvagrlskgikplqg 116
                  ++++lD++G g+S p   ++  +++      +l ++l++  +++++lvG S+GG+ia+ +aa  pd v+++ ll++ +       ++ ++++ l++   +++l++ + n+ +   +++ +l++
  MMETSP0890-20130614|40578_1  78 TCYALDWIGQGRSWP-DESDGLSVGAKIWQYQLIQFLEQVVQERAVLVGNSLGGFIATFVAASRPDLVAGVGLLNATPfwgfvSRNFPFWNAQLPAprtAFLLGSTWFNALR-NERTVRSLLK 198
                  689***********9.589999999999********************************************9999767777733333333333334333333333333333.3333333333 PP

>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0082        10       6      33 ..      40      68 ..      36      82 .. 0.72
   2 ?    3.5   0.0      0.03        38     102     135 ..     116     149 ..     102     160 .. 0.86
   3 !    5.5   0.0    0.0072       8.9     155     194 ..     253     292 ..     236     303 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0082
   PF02230.11  6 iespakpaqavvIflHGlGdsg.hllaea 33
                 + ++    qa ++flHG G  + h   ++
  MMETSP0890-20130614|40578_1 40 VSKGTTSSQAPIVFLHGFGVGEfHWENNQ 68
                 67778889999********8774444444 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.03
   PF02230.11 102 ipssriiigGFSqGaalalylaltspkplggiva 135
                  + ++r +++G S G+ +a+  a + p  ++g+  
  MMETSP0890-20130614|40578_1 116 VVQERAVLVGNSLGGFIATFVAASRPDLVAGVGL 149
                  678999********************99999855 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0072
   PF02230.11 155 kipilqlHgeeDevvplalgkaakellktllnkvelksye 194
                   +p+ +++g++D+ v    g++a   l++ +  +el+   
  MMETSP0890-20130614|40578_1 253 GVPFALIYGKDDPWVTTLWGQRAFRRLQQTVPYYELTPAG 292
                  49***********************999999877776654 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.7e-06    0.0047     113     159 ..     117     158 ..     104     224 .. 0.73
   2 ?   -2.5   0.0         2   2.5e+03     136     160 ..     224     274 ..     216     287 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.7e-06
                  ----EEEE--THHHHHHHHHHHH-TTT-SEEEEES----TTCCH--- CS
   PF00756.15 113 apdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq 159
                   +++ +++G S+GG++A  +a+ +pd+ + v+ + +      ++Wg 
  MMETSP0890-20130614|40578_1 117 VQERAVLVGNSLGGFIATFVAASRPDLVAGVGLLNA-----TPFWGF 158
                  344467*************************99983.....366665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2
                  -TTT-SEEEEES----TT..........................CCH---T CS
   PF00756.15 136 hpdrFgsvssfSpivnps..........................namWgqe 160
                   pd F+s++   p+++p                             +Wgq 
  MMETSP0890-20130614|40578_1 224 GPDIFTSIIFNPPPADPFdtalqtayfdhgvpfaliygkddpwvTTLWGQR 274
                  588899998888888888888888888888888777777777777777774 PP

>> PF11339.3  Protein of unknown function (DUF3141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     6e-06    0.0075      50     201 ..      30     186 ..      15     190 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6e-06
    PF11339.3  50 nYaLlrilppedvevdeakrPfvvidPRaGhgpGigGfk.edseiGvalraGhpvYfvaFlpe....pepgqtl...edvvrae.aaflekvaelhpeaekPvvignCqaGwavlllaalrpelv.GpiivaGaPlsywaGv.....rgknpmrYagGllGGswlta 201
                  n++ +r++ + ++ + +++ P v +     hg G+g f  e+ +  +a+ +G  +Y + ++ +    p ++  l   +++++ +  +fle+v+     +e+ v++gn  +G+ +  +aa+rp+lv G+ +++ +P+  +  +     + + p   ++ llG +w  a
  MMETSP0890-20130614|40578_1  30 NFKPVRVHYSVSKGTTSSQAPIVFL-----HGFGVGEFHwENNQAAIAIATGRTCYALDWIGQgrswPDESDGLsvgAKIWQYQlIQFLEQVV-----QERAVLVGNSLGGFIATFVAASRPDLVaGVGLLNATPFWGFVSRnfpfwNAQLPAPRTAFLLGSTWFNA 186
                  5555555555555555566665554.....99*****984567999**********9988755221122223230022333333134444444.....3489*********************85388899999974433322333366666666666777777665 PP

>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.6       8.2     1e+04       2       8 ..      51      57 ..      51      58 .. 0.89
   2 !   16.0   0.0   5.6e-06    0.0069      48      78 ..     108     138 ..     102     149 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 8.2
    PF05728.7  2 llYlHGF 8 
                 +++lHGF
  MMETSP0890-20130614|40578_1 51 IVFLHGF 57
                 799**** PP

  == domain 2    score: 16.0 bits;  conditional E-value: 5.6e-06
    PF05728.7  48 eleklvaelgddnillvGssLGGyyatrlge 78 
                  +l++ ++++++++ +lvG sLGG+ at++++
  MMETSP0890-20130614|40578_1 108 QLIQFLEQVVQERAVLVGNSLGGFIATFVAA 138
                  57788889999999*************9985 PP

>> PF05448.7  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0075       9.4      69     127 ..      36      94 ..      27     107 .. 0.67
   2 ?    6.7   0.0    0.0015       1.9     165     200 ..     109     144 ..     103     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0075
                  E---EEE-S.----B-EEEB----------HHHHHH..HHH---EEE--------..SSB- CS
    PF05448.7  69 ikaklvlPkeaeeklPalvefhGYegssgdwhdklk..yaaaGyavvamdvRGqggesedt 127
                  ++  + + + ++ + P +v  hG+  ++ +w+++ +   +a+G ++ a+d  Gqg +  d 
  MMETSP0890-20130614|40578_1  36 VHYSVSKGT-TSSQAP-IVFLHGFGVGEFHWENNQAaiAIATGRTCYALDWIGQGRSWPDE 94 
                  333333333.444555.56689**999888887654115689************9665554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
                  HHHCSTTB-TTG---B-------HHHHHHHH-S--S CS
    PF05448.7 165 ivlsldevDeervvvlGasqGGalalavaaleprvk 200
                  +++ l++v +er v +G+s GG +a  vaa  p++ 
  MMETSP0890-20130614|40578_1 109 LIQFLEQVVQERAVLVGNSLGGFIATFVAASRPDLV 144
                  6777999**********************9888754 PP

>> PF12146.3  Putative lysophospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-05     0.074      12      57 ..      44      90 ..      34     118 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.9e-05
    PF12146.3 12 eeppkaavvlvhgla.EhsgrYqelaedLaaqGyavyayDhrGhGks 57
                 +++++a +v++hg++     + ++ a    a G  +ya+D+ G+G+s
  MMETSP0890-20130614|40578_1 44 TTSSQAPIVFLHGFGvGEFHWENNQAAIAIATGRTCYALDWIGQGRS 90
                 4457999*****99556666667777777789**************9 PP

>> PF00326.16  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0003      0.37      60      90 ..     115     145 ..     102     172 .. 0.85
   2 ?   -2.0   0.0       1.2   1.6e+03     144     177 ..     253     286 ..     237     296 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0003
                  ---GGGEEE--------HHHHHHHH-GGG-- CS
   PF00326.16  60 yvdpdrlaitGgSyGGylvgaalnqrpdlFk 90 
                  +v ++r ++ G S GG+ +  +++ rpdl +
  MMETSP0890-20130614|40578_1 115 QVVQERAVLVGNSLGGFIATFVAASRPDLVA 145
                  7899***********************9854 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
                  ---EEEEEETT-SSS-THHHHHHHHHHH..--SE CS
   PF00326.16 144 ypplllihGeeDdrvppaealklvaaLqkagknv 177
                   +p+ li G  D+ v+   + + +++Lq++   +
  MMETSP0890-20130614|40578_1 253 GVPFALIYGKDDPWVTTLWGQRAFRRLQQTVPYY 286
                  5688899999999999999999999999875545 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00023      0.28      44      83 ..     103     138 ..      59     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
                  HHHHHHHHHHHHHHHHHSTTSEEEEE-------HHHHHHH CS
   PF01764.20  44 ksareqvlkelkrllekypdykivvtGHSLGGalAlLaaa 83 
                  k +++q+ + l++++++      v++G SLGG +A+ +aa
  MMETSP0890-20130614|40578_1 103 KIWQYQLIQFLEQVVQERA----VLVGNSLGGFIATFVAA 138
                  4788999999999998887....*************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                        11  (0.000804564); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.74u 0.44s 00:00:01.18 Elapsed: 00:00:00.84
# Mc/sec: 1041.27
//
Query:       MMETSP0890-20130614|40584_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.43   10.3  13.7       0.38   10.4   3.2    2.1  2  PF12254.3 DNA polymerase alpha subunit p180 N terminal


Domain annotation for each model (and alignments):
>> PF12254.3  DNA polymerase alpha subunit p180 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.2   2.8e-05      0.38      28      56 ..       6      35 ..       3      41 .. 0.85
   2 ?    4.8   1.7    0.0016        21      46      64 ..      44      58 ..      36      61 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.8e-05
    PF12254.3 28 devdeeeYrkivrkrlee.ddFivdDdGeG 56
                 ++v +ee +k ++++l+e +d++v+D++ +
  MMETSP0890-20130614|40584_1  6 EQVIDEELKKFNDEQLMEnEDYVVGDSDDE 35
                 67889***********999*******7644 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0016
    PF12254.3 46 ddFivdDdGeGYvdnGeee 64
                 ddF+ dD    Y++ G+++
  MMETSP0890-20130614|40584_1 44 DDFVCDD----YENSGNDD 58
                 9******....88888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       430  (0.0314511); expected 273.4 (0.02)
Passed bias filter:                      357  (0.0261118); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.91
# Mc/sec: 194.87
//
Query:       MMETSP0890-20130614|40583_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       664  (0.0485664); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.41s 00:00:00.97 Elapsed: 00:00:00.76
# Mc/sec: 759.90
//
Query:       MMETSP0890-20130614|40588_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-13   48.6   3.1    4.4e-10   38.9   0.0    2.7  3  PF13414.1  TPR repeat
    5.7e-09   36.2   6.9    0.00011   22.6   0.5    3.1  3  PF13432.1  Tetratricopeptide repeat
    7.7e-07   28.4   9.1      0.013   15.2   0.8    3.5  3  PF07719.12 Tetratricopeptide repeat
    3.8e-06   26.9   5.8      0.042   14.3   0.4    3.2  3  PF13428.1  Tetratricopeptide repeat
    2.4e-05   23.6   8.3       0.14   11.6   0.2    4.2  4  PF00515.23 Tetratricopeptide repeat
     0.0017   17.9   1.7        3.2    7.6   0.0    3.3  3  PF13176.1  Tetratricopeptide repeat
     0.0018   18.0   0.4          3    7.7   0.0    3.1  3  PF13424.1  Tetratricopeptide repeat
     0.0063   16.0   0.8       0.85    9.4   0.1    2.7  2  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.2   1.2       0.83    9.7   0.0    2.4  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
      0.035   13.3   0.0      0.072   12.3   0.0    1.5  1  PF00179.21 Ubiquitin-conjugating enzyme
      0.078   13.3   5.2          4    7.9   0.6    2.7  2  PF13174.1  Tetratricopeptide repeat
       0.11   11.7   1.3        8.3    5.6   0.0    2.7  2  PF10602.4  26S proteasome subunit RPN7
        1.2    9.6   4.9         23    5.6   0.0    3.1  3  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   2.5e+03      11      24 ..     114     127 ..     114     129 .. 0.77
   2 !   38.9   0.0   4.2e-13   4.4e-10       5      68 ..     141     206 ..     137     207 .. 0.89
   3 !   15.1   0.1   1.1e-05     0.011      24      63 ..     197     240 ..     196     244 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.4
    PF13414.1  11 nalfkegdydeAie 24 
                  n l  +g+++eA +
  MMETSP0890-20130614|40588_1 114 NILCAQGKFAEASQ 127
                  56788999999966 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 4.2e-13
    PF13414.1   5 alkelGnalfkegdydeAieayekAlel.dpnnaelyynlAlaylklgk.dyeeAledyekAleld 68 
                  + k+l+  +f++g+ d Ai+ay++A+++  p++ +l+ n+A+a +k+    + + + d++kA+ +d
  MMETSP0890-20130614|40588_1 141 KEKQLADDAFRAGNVDAAIAAYDRAIAIgLPHCSVLFRNRAAAREKRSSpSDIDIISDCTKAIDID 206
                  6799************************77****************984334589********998 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.1e-05
    PF13414.1  24 eayekAleld.....pnnaelyynlAlaylklgkdyeeAledyek 63 
                    ++kA+++d     p + ++++++A ay++ g d ++A +d+  
  MMETSP0890-20130614|40588_1 197 SDCTKAIDIDhalnePPSRKALLRRADAYFRSG-DLKKAQKDLLA 240
                  6799****985555566666*************.68***999865 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.3   1.3e+03       5      19 ..     114     128 ..     112     132 .. 0.81
   2 !   22.6   0.5   1.1e-07   0.00011       2      45 ..     144     188 ..     143     192 .. 0.89
   3 !   15.1   0.4   2.4e-05     0.025      21      63 ..     206     246 ..     202     248 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 1.3
    PF13432.1   5 rallraGdydeAlaa 19 
                  + l ++G+++eA ++
  MMETSP0890-20130614|40588_1 114 NILCAQGKFAEASQY 128
                  56899******9776 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.1e-07
    PF13432.1   2 alArallraGdydeAlaaleaalala.Peaaeallllaeallrlg 45 
                  +lA++++raG++d+A+aa+++a+a   P++   + ++a a  +++
  MMETSP0890-20130614|40588_1 144 QLADDAFRAGNVDAAIAAYDRAIAIGlPHCSVLFRNRAAAREKRS 188
                  69**************************99999999988887765 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 2.4e-05
    PF13432.1  21 eaalalaPeaaeallllaeallrlgrldeAa.allraalalaPd 63 
                  ++al ++P    all++a+a++r g+l++A   ll+a  ++ P+
  MMETSP0890-20130614|40588_1 206 DHALNEPP-SRKALLRRADAYFRSGDLKKAQkDLLAA--KACPG 246
                  68899999.99********************666665..77776 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.13   1.3e+02       9      23 ..     114     128 ..     114     129 .. 0.86
   2 !   14.2   0.2   2.7e-05     0.028       6      30 ..     144     168 ..     143     169 .. 0.93
   3 !   15.2   0.8   1.3e-05     0.013       2      27 ..     216     241 ..     215     244 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.13
                  HHHHHTT-HHHHHHH CS
   PF07719.12   9 layyklgdyeeAlea 23 
                  +++ ++g+++eA ++
  MMETSP0890-20130614|40588_1 114 NILCAQGKFAEASQY 128
                  57899*******877 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.7e-05
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAlel 30 
                  +l++ ++++g+ + A++a+++A+++
  MMETSP0890-20130614|40588_1 144 QLADDAFRAGNVDAAIAAYDRAIAI 168
                  58999*****************986 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekA 27 
                  +al ++++ay+++gd+++A +++  A
  MMETSP0890-20130614|40588_1 216 KALLRRADAYFRSGDLKKAQKDLLAA 241
                  6899*****************99887 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         5   5.3e+03      10      23 ..     115     128 ..     113     129 .. 0.81
   2 !   13.1   0.4   9.7e-05       0.1       6      31 ..     144     169 ..     141     184 .. 0.84
   3 !   14.3   0.4     4e-05     0.042       2      34 ..     216     247 ..     215     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 5
    PF13428.1  10 allalGdpdeAial 23 
                  +l a+G ++eA ++
  MMETSP0890-20130614|40588_1 115 ILCAQGKFAEASQY 128
                  67899*****9775 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 9.7e-05
    PF13428.1   6 alarallalGdpdeAiallrralala 31 
                  +la+  +++G++d+Aia+++ra+a +
  MMETSP0890-20130614|40588_1 144 QLADDAFRAGNVDAAIAAYDRAIAIG 169
                  789999*****************964 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 4e-05
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPdd 34 
                  +all++a+a++++Gd+++A + l +a +++P++
  MMETSP0890-20130614|40588_1 216 KALLRRADAYFRSGDLKKAQKDLLAA-KACPGQ 247
                  699******************99999.778864 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.16   1.7e+02       9      23 ..     114     128 ..     114     129 .. 0.87
   2 !   11.6   0.2   0.00013      0.14       7      30 ..     145     168 ..     143     168 .. 0.85
   3 ?    0.9   0.0      0.33   3.5e+02      21      32 ..     196     207 ..     196     208 .. 0.85
   4 !   10.8   0.2   0.00025      0.26       2      24 ..     216     238 ..     216     242 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.16
                  HHHHHTT-HHHHHHH CS
   PF00515.23   9 naylklgkydeAley 23 
                  n++  +gk+ eA +y
  MMETSP0890-20130614|40588_1 114 NILCAQGKFAEASQY 128
                  67889*******887 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00013
                  HHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   7 lGnaylklgkydeAleyyekALel 30 
                  l+   ++ g+ d A+++y++A+ +
  MMETSP0890-20130614|40588_1 145 LADDAFRAGNVDAAIAAYDRAIAI 168
                  55667899*************986 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHT CS
   PF00515.23  21 leyyekALelnP 32 
                  + ++ kA+ +++
  MMETSP0890-20130614|40588_1 196 ISDCTKAIDIDH 207
                  569******995 PP

  == domain 4    score: 10.8 bits;  conditional E-value: 0.00025
                  HHHHHHHHHHHHTT-HHHHHHHH CS
   PF00515.23   2 kalynlGnaylklgkydeAleyy 24 
                  kal +++ ay++ g++++A ++ 
  MMETSP0890-20130614|40588_1 216 KALLRRADAYFRSGDLKKAQKDL 238
                  699****************9986 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.85   8.9e+02       7      20 ..     114     127 ..     113     129 .. 0.84
   2 !    7.6   0.0    0.0031       3.2       5      28 ..     145     168 ..     143     191 .. 0.87
   3 !    7.2   0.2    0.0042       4.4       1      18 [.     217     234 ..     217     241 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.85
    PF13176.1   7 rlysrlgdyekAie 20 
                  ++ +++g++ +A +
  MMETSP0890-20130614|40588_1 114 NILCAQGKFAEASQ 127
                  5899*******966 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0031
    PF13176.1   5 LarlysrlgdyekAielyeraLal 28 
                  La+  +r g+ + Ai +y ra+a+
  MMETSP0890-20130614|40588_1 145 LADDAFRAGNVDAAIAAYDRAIAI 168
                  77778999************6654 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0042
    PF13176.1   1 allnLarlysrlgdyekA 18 
                  all+ a++y+r+gd +kA
  MMETSP0890-20130614|40588_1 217 ALLRRADAYFRSGDLKKA 234
                  79999***********99 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.77   8.1e+02      55      68 ..     115     128 ..     113     130 .. 0.72
   2 !    7.7   0.0    0.0029         3      11      34 ..     145     168 ..     142     174 .. 0.67
   3 !    6.2   0.0    0.0083       8.7       7      30 ..     217     240 ..     197     244 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.77
    PF13424.1  55 lylalgdydeAley 68 
                  ++ a+g+++eA +y
  MMETSP0890-20130614|40588_1 115 ILCAQGKFAEASQY 128
                  66677888887776 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0029
    PF13424.1  11 lalvlrrlgdydeAlelyekalel 34 
                  la+  +r g+ d A++ y +a+++
  MMETSP0890-20130614|40588_1 145 LADDAFRAGNVDAAIAAYDRAIAI 168
                  555666677777777777777666 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0083
    PF13424.1   7 ilnnlalvlrrlgdydeAlelyek 30 
                  +l + a++++r gd+++A++ +  
  MMETSP0890-20130614|40588_1 217 ALLRRADAYFRSGDLKKAQKDLLA 240
                  456778888888888888776655 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.038        40      14      29 ..     152     167 ..     149     168 .. 0.87
   2 !    9.4   0.1   0.00081      0.85       2      25 ..     216     239 ..     215     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.038
                  TT-HHHHHHHHH---H CS
    PF13181.1  14 lGdydkAkeylekale 29 
                   G+ d+A++++ +a+ 
  MMETSP0890-20130614|40588_1 152 AGNVDAAIAAYDRAIA 167
                  59**********9986 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00081
                  --TTT---HHHHTT-HHHHHHHHH CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeyle 25 
                  ka+++++d+Y+  Gd +kA + l 
  MMETSP0890-20130614|40588_1 216 KALLRRADAYFRSGDLKKAQKDLL 239
                  6899***************99876 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3      0.05        52      34      83 ..     115     164 ..     101     183 .. 0.73
   2 ?    9.7   0.0   0.00079      0.83      22      49 ..     211     239 ..     195     259 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.05
                  HHHH---HHHHHHHHHCTSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2  34 clylngeykrAyellrkleldssslgcryllArcllklgkydeAiavLek 83 
                   l+ +g++ +A +++ +++  + + +    lA  ++  g +d Aia++++
  MMETSP0890-20130614|40588_1 115 ILCAQGKFAEASQYIPEQKEACDQTAKEKQLADDAFRAGNVDAAIAAYDR 164
                  67888888888888855444443334555778888888888888888876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00079
                  -H.HHHCHHHHHHHHHH---HHHHHHHHH CS
    PF12895.2  22 dp.edaylyalAlclylngeykrAyellr 49 
                  +p +  +l++ A +++++g+ k+A + l 
  MMETSP0890-20130614|40588_1 211 EPpSRKALLRRADAYFRSGDLKKAQKDLL 239
                  2345669999**************98873 PP

>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.8e-05     0.072      81     111 ..       3      46 ..       2      71 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.8e-05
                  B-HGGGS..TTT--TT--HHHHHHHHHHHH...........HS- CS
   PF00179.21  81 icldiLk..eekWspaltlesvLlsiqsll...........aep 111
                  ic+++ +   e+W+p +++ ++L +++s++           ++p
  MMETSP0890-20130614|40588_1   3 ICMSMSDyhPESWNPGWSVATILKGVLSFMlsdelttgaieTSP 46 
                  666553322567****************9966655544443333 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2      0.01        11       7      28 ..     146     167 ..     144     168 .. 0.80
   2 ?    7.9   0.6    0.0038         4       2      21 ..     217     236 ..     216     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.01
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   7 alsyyklgdtdeAlealerlik 28 
                  a   +++g+ d+A++a++r i+
  MMETSP0890-20130614|40588_1 146 ADDAFRAGNVDAAIAAYDRAIA 167
                  55567778***********985 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0038
                  HHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAle 21 
                  Al+++a +y++ gd  +A +
  MMETSP0890-20130614|40588_1 217 ALLRRADAYFRSGDLKKAQK 236
                  9**********77****987 PP

>> PF10602.4  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.034        36      40      63 ..     143     166 ..     135     169 .. 0.87
   2 ?    5.6   0.0    0.0079       8.3      36      58 ..     215     237 ..     204     243 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.034
    PF10602.4  40 edlaehYlkigdleeAlkaysrar 63 
                  ++la+  +++g+++ A++ay ra 
  MMETSP0890-20130614|40588_1 143 KQLADDAFRAGNVDAAIAAYDRAI 166
                  6789999**************985 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0079
    PF10602.4  36 rraledlaehYlkigdleeAlka 58 
                  r+al+++a+ Y++ gdl++A+k 
  MMETSP0890-20130614|40588_1 215 RKALLRRADAYFRSGDLKKAQKD 237
                  8999****************986 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.6   3.7e+03      13      20 ..     118     125 ..     116     127 .. 0.90
   2 ?    4.1   0.6     0.068        72       7      26 .]     145     164 ..     144     164 .. 0.89
   3 ?    5.6   0.0     0.022        23       3      20 ..     217     234 ..     216     235 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 3.6
                  H------- CS
    PF07721.9  13 alGdldeA 20 
                  a+G ++eA
  MMETSP0890-20130614|40588_1 118 AQGKFAEA 125
                  79*****9 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.068
                  -HHHHHH-------HHHHHT CS
    PF07721.9   7 LArallalGdldeAraller 26 
                  LA  ++++G+ d+A a+ +r
  MMETSP0890-20130614|40588_1 145 LADDAFRAGNVDAAIAAYDR 164
                  8999**********988775 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.022
                  HH---HHHHHH------- CS
    PF07721.9   3 allaLArallalGdldeA 20 
                  all +A a+++ Gdl  A
  MMETSP0890-20130614|40588_1 217 ALLRRADAYFRSGDLKKA 234
                  78899*********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       690  (0.0504681); expected 273.4 (0.02)
Passed bias filter:                      435  (0.0318169); expected 273.4 (0.02)
Passed Vit filter:                        55  (0.00402282); expected 13.7 (0.001)
Passed Fwd filter:                        13  (0.000950848); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.38s 00:00:01.04 Elapsed: 00:00:00.68
# Mc/sec: 1106.55
//
Query:       MMETSP0890-20130614|40589_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-12   46.3   0.0    5.2e-11   42.5   0.0    2.2  1  PF13417.1 Glutathione S-transferase, N-terminal domain
    1.5e-09   37.5   0.2    4.1e-09   36.2   0.1    1.7  1  PF13409.1 Glutathione S-transferase, N-terminal domain
      0.004   16.8   0.0     0.0074   16.0   0.0    1.6  1  PF13410.1 Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.1e-14   5.2e-11       2      72 ..      11     105 ..      10     109 .. 0.74

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.1e-14
                  E--TTSHHHHHHHHHHHH--.--EEE----......................TTTT..HHHHHHH-TT--SSEEE.----EEESHHHHHHHHHHH-- CS
    PF13417.1   2 ygspfSpyarkvrlaLeekg.lpyelvevt......................pgkk..rpellalnpkgkvPvLe.ddgevltdSlvIieyLeerfp 72 
                  ++s+f+p+a++++la e++g l+ye++e                        +  +  +p+lla np+g +P+L+ ++++v t+S++ i  +++++ 
  MMETSP0890-20130614|40589_1  11 FSSWFCPFAHRAWLAFEHHGnLQYEWIEALgweeraatgreqfdastrsswyY--HwkSPDLLAANPQGMIPTLVaQGNRVATESIPCIALIDTLAR 105
                  89****************9978****988744444444444444333332221..1347888************956688******99999998876 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   8.9e-13   4.1e-09       1      68 [.      15     101 ..      15     103 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 8.9e-13
                  --HHHHHHHHHHHH-.---EEEEE......EH....TT..................SHHHHHHHH------SEEE.----EEESHHHHHHHHH CS
    PF13409.1   1 acPwahRvlialalk.gledeisv......vplepkgf..................ekseellalsprgtVPvLwdkdgtvineSseIlryln 68 
                  +cP+ahR+++a++++ +l++e  +                                 ks++lla++p+g++P+L+  +++v +eS   +  ++
  MMETSP0890-20130614|40589_1  15 FCPFAHRAWLAFEHHgNLQYEWIEalgweeR------AatgreqfdastrsswyyhWKSPDLLAANPQGMIPTLVAQGNRVATESIPCIALID 101
                  7**************669***8884555550......3444444444444444444457889*************98888*****88777666 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-06    0.0074      24      69 .]     175     223 ..      96     223 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-06
                  -SS.----.---HHHHHHHHHHHHHHHH..H------TT----HHHHHH CS
    PF13410.1  24 dgpfllGd.rpslaDialapflvrldaa..gpgldireayPnlrawler 69 
                   gpf+ G  +ps++D++l p   r+++   ++g+      P+  awl++
  MMETSP0890-20130614|40589_1 175 GGPFFDGRhEPSIVDFTLLPYATRFYVLdhYRGFVVSGQNPKYDAWLQA 223
                  455777779****************999555566666778998899886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       260  (0.019017); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 955.12
//
Query:       MMETSP0890-20130614|40601_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   18.0   0.1    0.00089   17.4   0.0    1.4  1  PF07393.6 Exocyst complex component Sec10
  ------ inclusion threshold ------
      0.068   12.3   0.1       0.11   11.6   0.1    1.3  1  PF05549.6 Allexivirus 40kDa protein
        0.1   12.6   2.6       0.13   12.3   0.3    2.1  2  PF11941.3 Domain of unknown function (DUF3459)


Domain annotation for each model (and alignments):
>> PF07393.6  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-07   0.00089     626     703 ..     129     204 ..      15     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.9e-07
    PF07393.6 626 tvsseGGlmltkDlneYqdavksfkipelsekFelLrelgnlfiVqpevlkslvkegalakldrelireyiqrReDyk 703
                   +s+ G+++l kD+ +  + +++++  + + k++ Lre   lf  + ++l+s +   ++a l +e+++  + +R+D+ 
  MMETSP0890-20130614|40601_1 129 AISVCGAFVLAKDIDHMISSLTELGCTSTDSKLSQLRENIALFKLEKDQLASTL--LHDASLAPENLESLLLKRADAH 204
                  47889**********************************************987..56667***************87 PP

>> PF05549.6  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.5e-05      0.11      58     118 ..     139     199 ..     136     208 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.5e-05
    PF05549.6  58 shdvdsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasdskllk 118
                  ++d+d++i++l ++  +s+ ++Ls+lr+++  ++ + d+l+s+  +    a ++ +s llk
  MMETSP0890-20130614|40601_1 139 AKDIDHMISSLTELGCTSTDSKLSQLRENIALFKLEKDQLASTLLHDASLAPENLESLLLK 199
                  689*************************************999877766666666655555 PP

>> PF11941.3  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.36   1.7e+03      48      62 ..      10      24 ..       3      69 .. 0.50
   2 ?   12.3   0.3   2.8e-05      0.13       8      40 ..      78     110 ..      77     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.36
                 EEE-SSS-B---..-- CS
    PF11941.3 48 llNLgdepvalp.dga 62
                  + Lgd+  a + + a
  MMETSP0890-20130614|40601_1 10 RAELGDSLLARAaN-A 24
                 44555533333321.1 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.8e-05
                  HHHHHHHHTT--S----EEEE----EEEEE--. CS
    PF11941.3   8 LRrehPaLadarrgglevavlgpkallvrwrlg 40 
                  LR++ Pa++d ++  ++ a++ +++l +rwrl+
  MMETSP0890-20130614|40601_1  78 LRQQKPAFSDKDSSHYDRARDVAATLHARWRLA 110
                  9******************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       339  (0.0247952); expected 273.4 (0.02)
Passed bias filter:                      253  (0.018505); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.39s 00:00:00.88 Elapsed: 00:00:01.07
# Mc/sec: 494.95
//
Query:       MMETSP0890-20130614|40603_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       163  (0.0119222); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 218.80
//
Query:       MMETSP0890-20130614|40619_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.1   0.0    1.5e-15   56.7   0.0    1.1  1  PF01596.12 O-methyltransferase
    1.8e-13   51.0   0.1    3.2e-13   50.3   0.1    1.4  1  PF13578.1  Methyltransferase domain
      2e-06   27.7   0.2    3.4e-06   26.9   0.1    1.5  1  PF13659.1  Methyltransferase domain
    0.00022   20.5   0.0    0.00036   19.8   0.0    1.2  1  PF05175.9  Methyltransferase small domain
     0.0004   19.8   0.1    0.00067   19.1   0.0    1.4  1  PF13847.1  Methyltransferase domain
     0.0011   19.4   0.1     0.0018   18.7   0.0    1.4  1  PF12847.2  Methyltransferase domain
  ------ inclusion threshold ------
      0.053   13.8   0.0        0.1   12.9   0.0    1.4  1  PF08241.7  Methyltransferase domain
      0.098   11.9   0.0       0.14   11.4   0.0    1.3  1  PF03602.10 Conserved hypothetical protein 95
       0.12   11.7   0.0       0.17   11.2   0.0    1.2  1  PF01135.14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
       0.13   11.1   0.1       0.18   10.6   0.0    1.1  1  PF09243.5  Mitochondrial small ribosomal subunit Rsm22


Domain annotation for each model (and alignments):
>> PF01596.12  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.1e-18   1.5e-15       3     159 ..      30     182 ..      28     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.1e-18
   PF01596.12   3 tsveesellkeLreatakkpglsamqvspeegqf.Lsll...vklvgakkvleiGvftGyslLatalalPedGkiiaidideeaaeigkkfiqkagvedkielilgdalkvLeelvedkkqgefDlifvDaDkssYknyyeklleLvkvGgliaiDntLwe 159
                  tsv + + + ++ ++  +k+   +m v pe+g++ Ls l   v+  ++ + leiG + Gy    +a al ++  ++++did +a + +k+++ +ag+e+++ ++  +      +l++++   +f+++f+D Dks Y    + +l  +  G +++ Dn+L +
  MMETSP0890-20130614|40619_1  30 TSVGDVTSILQIADMFCEKK-HWMMLVGPEKGRIvLSALeqaVHKHESIHCLEIGSYVGYGSALIASALRQNDTLLTLDIDAQACAWTKRLLVQAGLEHRVTIRNDNV----TSLRDNE---TFNFVFIDHDKSLYLSDLQIILPHLASGAVVVADNVLCF 182
                  56666666666777766666.578999*****96456661114445566789**************************************************997654....3455555...7***********************************975 PP

>> PF13578.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   2.3e-16   3.2e-13       1     106 []      80     179 ..      80     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 2.3e-16
    PF13578.1   1 vEiGvysGvstlvllqalkrngagrlysvdpdpgaeeaaalaee....agladrvrllkgdseealasladgsiDllfiDgghaaeavladleallprlapggvvlldDy 106
                  +EiG+y G+ ++++++al++n+  +l+++d d+   +a a+ ++    agl++rv++ +++  ++  + + +++ ++fiD  h+++ +l+dl+ +lp+la+g+vv+ d++
  MMETSP0890-20130614|40619_1  80 LEIGSYVGYGSALIASALRQND--TLLTLDIDA---QACAWTKRllvqAGLEHRVTIRNDNVTSL--RDN-ETFNFVFID--HDKSLYLSDLQIILPHLASGAVVVADNV 179
                  7*********************..59999**99...6555555555559*******999998888..445.89*******..899**********************985 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   2.5e-09   3.4e-06      10      77 ..      87     151 ..      60     176 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.5e-09
    PF13659.1  10 GsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdlaellragsfdlvvtn 77 
                  G G  l+a + + ++ ll +++d++a+a+++r l +agl++rv++r+ +++ l+   + + f++v+++
  MMETSP0890-20130614|40619_1  87 GYGSALIASALRQNDTLLTLDIDAQACAWTKRLLVQAGLEHRVTIRNDNVTSLR---DNETFNFVFID 151
                  55666666666668************************************9999...88999999876 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.6e-07   0.00036      24     103 ..      68     149 ..      59     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.6e-07
                  HHHS-TT------B-------HHHHHHHH-TT--.--EEESBHHHHHHHHHHHHH----..--EEE-STTTT--.--BS-EE CS
    PF05175.9  24 letlpkklagkvlDlGcGaGvlgaalakespele.vtlvDinarAvesakanleanklen.vevlasdlleeveekkfdliv 103
                   ++++k+++ + l++G+ +G+ +a +a++  +++ +  +Di+a+A + +k+ l + +le+ v+++  ++++  +++ f++++
  MMETSP0890-20130614|40619_1  68 EQAVHKHESIHCLEIGSYVGYGSALIASALRQNDtLLTLDIDAQACAWTKRLLVQAGLEHrVTIRNDNVTSLRDNETFNFVF 149
                  334444456669****9888888887777666665999**********************99********9999*****997 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.9e-07   0.00067       2      92 ..      74     164 ..      73     193 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.9e-07
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfe.nveFiqgdieeleklleesfDlvisnevl.naladpqkv 92 
                  ++ i+ l++G+  Gy +  +a+ l+++ ++  +Di+++a++  k+++ + g+e +v++++ ++++l  +  e+f++v+ +      l+d+q +
  MMETSP0890-20130614|40619_1  74 HESIHCLEIGSYVGYGSALIASALRQNDTLLTLDIDAQACAWTKRLLVQAGLEhRVTIRNDNVTSLRDN--ETFNFVFIDHDKsLYLSDLQII 164
                  567899****************9999*****************************************98..9*****9984444445555444 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.3e-06    0.0018       5     108 ..      79     175 ..      73     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.3e-06
    PF12847.2   5 ilDlGcGtGslslelar.lrpgakvvgvDpseeslelarenaksldleeriellqgdakeelsllerfDavllkgltldallaldeprrvlealpkllkpggrlv 108
                   l++G+ +G+ s+ +a+ lr++ +++ +D++++++++ ++ + +++le+r+++++ ++   l + e f +v++++ + + +l+       l+ +  +l++g ++v
  MMETSP0890-20130614|40619_1  79 CLEIGSYVGYGSALIASaLRQNDTLLTLDIDAQACAWTKRLLVQAGLEHRVTIRNDNV-TSLRDNETFNFVFIDH-DKSLYLSD------LQIILPHLASGAVVV 175
                  599999999988888887788888******************999*************.66666666******99.88889998......998888888887776 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.4e-05       0.1       3      66 ..      86     150 ..      80     153 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.4e-05
    PF08241.7   3 vGcGtglllealaerpaarvtgvDlseemlatakerlkeegle....lvvadaeelpfednsfDvvvs 66 
                  vG G+ l+++al+++   +++ +D++++++a+ k+ l + gle    +++ ++++l  ++++f +v++
  MMETSP0890-20130614|40619_1  86 VGYGSALIASALRQN--DTLLTLDIDAQACAWTKRLLVQAGLEhrvtIRNDNVTSLR-DNETFNFVFI 150
                  566666666666666..**************************99766666666663.3569999886 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.14      42     121 ..      75     151 ..      59     184 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
   PF03602.10  42 egarvLDl..faGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkkeefdlvflD 121
                  e  ++L++  + G G+  +  + R+ +  + ++ d++a+a  k+ l + +le+   ++r+d+   l+     +e f++vf+D
  MMETSP0890-20130614|40619_1  75 ESIHCLEIgsYVGYGSALIASALRQNDTLLTLDIDAQACAWTKRLLVQAGLEH-RVTIRNDNVTSLRD----NETFNFVFID 151
                  555666644499****9999999***************************886.56666665555544....468******9 PP

>> PF01135.14  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.17      72     133 ..      74     135 ..      61     152 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
                  -TT-EEEEE------HHHHHHTTSSEEE...EE-SB---HHHHHHHHHHTT--SEEEE---- CS
   PF01135.14  72 kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDG 133
                  ++  + Le+Gs  Gy +a++a  ++++ ++++++  ++ ++ +kr l + +le+ +++  D 
  MMETSP0890-20130614|40619_1  74 HESIHCLEIGSYVGYGSALIASALRQNDTLLTLDIDAQACAWTKRLLVQAGLEHRVTIRNDN 135
                  567799***************************99999999999999999988555555555 PP

>> PF09243.5  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.18      21     128 ..      62     168 ..      59     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    PF09243.5  21 avLdelaervpefaPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrdvvrealeleeadLviisyvLleledesrekliknl 128
                   vL +l+++v ++   ++l++g+ +g +   +    ++   +l++d  +++ + +k l+ +a   ++++ r+d v++ ++ e+ + v i +  ++l+ ++ ++++ +l
  MMETSP0890-20130614|40619_1  62 IVLSALEQAVHKHESIHCLEIGSYVGYGSALIASALRQNDTLLTLDIDAQACAWTKRLLVQAGLEHRVTIRNDNVTSLRDNETFNFVFIDHD-KSLYLSDLQIILPHL 168
                  5899**********************999999999**************************99999999******99999999999999885.566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       347  (0.0253803); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.43s 00:00:00.94 Elapsed: 00:00:00.83
# Mc/sec: 678.49
//
Query:       MMETSP0890-20130614|40617_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.18   11.0   0.0    1.4  1  PF00179.21 Ubiquitin-conjugating enzyme
       0.14   10.5   0.0       0.21    9.9   0.0    1.2  1  PF12897.2  Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> PF00179.21  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.6e-05      0.18      45     106 ..     272     335 ..     226     357 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.6e-05
                  B-EEEEEE--TTTTTS--EEEESS--SCTTB-----B.....-HGGGSTTT--TT--HHHHHHHHHH CS
   PF00179.21  45 glFklkikfpeeYPfkPPkvkfvtkifHPnvdetGei.....cldiLkeekWspaltlesvLlsiqs 106
                  glF ++++f  ++P kPP++ +    f  n    G+i      ld ++ + +sp +++e    +++ 
  MMETSP0890-20130614|40617_1 272 GLFVVTFRFAVDFPEKPPTMSIRD--FSANNTVGGQIsskdtLLDRIHYK-YSPRWQVERMAQELVD 335
                  79******************9988..888888888887666667777755.9999999887666654 PP

>> PF12897.2  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.1e-05      0.21     113     158 ..     129     178 ..     111     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.1e-05
    PF12897.2 113 rdsegpwvke...ekvkllvtvpGydrhfl.lletlGielltvdlqddGp 158
                  ++ +++w+k        ll+ vp  d+hfl ++    + ++ + l++dG 
  MMETSP0890-20130614|40617_1 129 VEVDEAWLKMkkdGSLDLLCRVPCDDKHFLeIIGVNSFTMVKISLNSDGS 178
                  566778865411156799***********86889999***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       444  (0.0324751); expected 273.4 (0.02)
Passed bias filter:                      403  (0.0294763); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.73
# Mc/sec: 1290.09
//
Query:       MMETSP0890-20130614|40612_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-56  192.0   0.0    1.6e-56  191.7   0.0    1.0  1  PF04547.7 Calcium-activated chloride channel
  ------ inclusion threshold ------
        4.2    7.0   6.9       0.78    9.4   2.0    1.8  2  PF08595.6 RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> PF04547.7  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   2.3e-60   1.6e-56     215     450 ..       2     296 ..       1     298 [. 0.85

  Alignments for each domain:
  == domain 1    score: 191.7 bits;  conditional E-value: 2.3e-60
    PF04547.7 215 nsylslfyiaFfkk.................lrqeecks.dlerLkeqlatllitkqllqnitevllPylkerlrkvkvkekkeeksed...........................ese...................keeeekesleqaekeselqtyevs.gtfddylemviqfGyvvLFsaafPlapllalinniieirsdafklltelrRpvpqraesIGqWqkilellgvlavitNafliaftsdgqlqrllndlslaarlllvvvlehvvlllkyliavlipdipewvreelkre 450
                  n+y+s++y+aF+k+                 +r  +c + ++ +L++ql+t++it+ l++n+++vl+Py+   +++ k +++ + + ++                                                 k+   ++ l+ ae++++l++y v  g f dy e+++  G+ vLF+ afPlapl+al+n  +eir+d +++  + rRp+p  ae+IG+W++i+el+++lavi+N ++i++t     + l+n  + a+r+ +++++ h+++++kylia+li d+p++v+ ++ r+
  MMETSP0890-20130614|40612_1   2 NAYASFVYTAFVKRiqaqvpgaaqpfpasrtPRLFDCVDsCMIDLQTQLSTIFITRVLISNLKSVLIPYFFWSREQAKKRRRAKAEARRraarlesggenddddldddqdddqddnA-AaddipnenneddisagtniKKGHAQRVLSPAEEQFKLEEYHVMlGPFADYAELITILGFAVLFVGAFPLAPLMALVNSYVEIRVDGWRIAQTSRRPWPAGAEDIGTWNDIIELMSYLAVIINGLIITYTG----DFLINR-TNATRFTIFIAYCHALFFFKYLIAILIDDTPSDVQVQIDRQ 296
                  89****************************9888788778*****************************987766664444444444223455555555444555555444444440.044555555566777888889999999***************999*************************************************************************************4....555555.7889*********************************9997 PP

>> PF08595.6  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.0   0.00011      0.78      45      83 ..      82     122 ..      55     140 .. 0.61
   2 ?   -2.0   0.1      0.37   2.5e+03      47      71 ..     322     346 ..     313     356 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00011
    PF08595.6  45 krkkk..kkepridedenelddededdeeeededeeeaeen 83 
                  +r k   +++    e+++e+dd+d dd++++d+d+++a ++
  MMETSP0890-20130614|40612_1  82 RRAKAeaRRRAARLESGGENDDDDLDDDQDDDQDDNAAADD 122
                  33333553333334555566666666666666555544433 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.37
    PF08595.6  47 kkkkkepridedenelddededdee 71 
                   +k+ +++ ++++ +l+  dedd++
  MMETSP0890-20130614|40612_1 322 TRKNDNNEANQQGPDLTIYDEDDDH 346
                  5667777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       835  (0.0610737); expected 273.4 (0.02)
Passed bias filter:                      562  (0.0411059); expected 273.4 (0.02)
Passed Vit filter:                        84  (0.00614394); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.44s 00:00:01.29 Elapsed: 00:00:00.90
# Mc/sec: 1094.34
//
Query:       MMETSP0890-20130614|40621_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       250  (0.0182855); expected 273.4 (0.02)
Passed bias filter:                      188  (0.0137507); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.38s 00:00:01.01 Elapsed: 00:00:01.06
# Mc/sec: 800.29
//
Query:       MMETSP0890-20130614|40626_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.39s 00:00:00.71 Elapsed: 00:00:00.90
# Mc/sec: 175.73
//
Query:       MMETSP0890-20130614|40625_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-15   56.9   0.0    2.6e-15   56.1   0.0    1.3  1  PF00069.20 Protein kinase domain
    4.3e-07   29.1   0.0    6.6e-07   28.5   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
    1.1e-06   28.2   0.2    2.3e-06   27.2   0.1    1.5  1  PF00787.19 PX domain
    1.5e-06   28.2   0.0    3.4e-06   27.1   0.0    1.6  1  PF00169.24 PH domain
    1.7e-05   24.8   0.0      5e-05   23.3   0.0    1.8  2  PF00536.25 SAM domain (Sterile alpha motif)
    0.00013   21.6   0.0    0.00039   20.1   0.0    1.9  1  PF07647.12 SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.026   14.3   0.2      0.065   13.0   0.2    1.6  1  PF12814.2  Meiotic cell cortex C-terminal pleckstrin homology


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.3e-18   2.6e-15     136     254 ..       6     120 ..       1     123 [. 0.86

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.3e-18
                  -EEE------EEECEESS-CSS----GGGS-HHHHH.TSHHHHHHHHHHHHHHHHHHHHC..---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHH CS
   PF00069.20 136 elkiaDFGlakkleksseklttlvgtreYmAPEvll.kakeytkkvDvWslGvilyellt..gklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeei 254
                  ++k+ DFG+a   e ++++++t++gt+eYmAPE+   + + y+ ++Dv+slG+++ e+ t  +  ++  +s +d+ +l e+ l+++l+++++      ++ ++l  ++++++ ++R+ ae++
  MMETSP0890-20130614|40625_1   6 HVKLGDFGMAT--EVHNGRASTICGTNEYMAPELHFgETESYSLSIDVFSLGMVFLEIGTrtKASVLAPRSPRDRFQLDEQHLRNELQKQCSI-----NSYCELAMQCVAYEDYDRIGAEDA 120
                  79********8..8********************7647899****************988435577777888999999999999888888764.....57899**************99876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.4e-10   6.6e-07     141     250 ..       6     115 ..       1     123 [. 0.81

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.4e-10
                  EEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSE..EEHHHHHHH---HHHHHHTTT-GTTTTS.HHHHHHHHHHTT-BS---TTSBHHHH.HHHHHHT-SSGGGS- CS
   PF07714.12 141 vvkisDfGLardiekddyykkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypgl.sneevlellkegkrlekpekcpeely.elmkqCweeepeeRp 250
                  +vk++DfG+a +++      + ++     ++mapE+ + ++  ++   Dv+s G++  Ei t+ + ++    s+++ ++l +++ r e +++c+ + y el +qC+++e  +R 
  MMETSP0890-20130614|40625_1   6 HVKLGDFGMATEVH----NGRASTICGTNEYMAPELHFGETesYSLSIDVFSLGMVFLEIGTRTKASVLAPrSPRDRFQLDEQHLRNELQKQCSINSYcELAMQCVAYEDYDRI 115
                  79***********3....334444556789*****98766566********************9988877747777777779999999999998766538899*****999996 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.2e-09   2.3e-06      20      98 ..     561     647 ..     545     664 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.2e-09
                  SEEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHHTT............TSTSTS--TTSSSHHCGTTSHHHHHHHHHHHHHHHHHHHHSC CS
   PF00787.19  20 syylievelktgakewtvkRrYsdFeeLhskLlrkfp............rlklPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhp 98 
                  ++y i+ ++k   ++++++ rY  F+ L  kL++ +             +  lP+lP+++lf+   +k + f+e+rrk+L++yLq+ +   
  MMETSP0890-20130614|40625_1 561 ALYGIKSHYKF--RKSHLHLRYANFVTLFAKLRSIERerkhtsspftdhGDPLPKLPGSRLFVD--QKGPLFLEQRRKELDDYLQKTIAVA 647
                  45666667776..59999***************999999***********************87..99*****************988654 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.7e-09   3.4e-06       2     101 ..     268     372 ..     267     375 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.7e-09
                  SBEEEEEEEE..TSSSCEEEEEEEEETTEEEEESSSSTTCECSECEEEECGGE.EEEEEEETTSS......CTTSSSSEEEEEETTT.CEEEEEESSHHHHHHHHHHHHH CS
   PF00169.24   2 ikeGyllkks..ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc.tvkkasstkfa......lqkesnnyfeitfkdv.esyllsaeseeerkrWvqalkn 101
                   ++G+l kk+  +l++++ kr+fv +++ L +f ++     ++ +g   l    ++  +  tkfa      ++k+    +  +   +   ++lsa +e  +  W+qal+ 
  MMETSP0890-20130614|40625_1 268 RMAGWLNKKTrnSLRSRYNKRWFVVKRKTLTWFSKPG---IANAMGRLALAANhELVSTGPTKFAiyatssSTKNVGSGISSRS--RkAVLELSAVDETAKDMWLQALQT 372
                  589*********************************9...56666666666555999999999965544222444444444444..455*******************96 PP

>> PF00536.25  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.4   1.3e+04       6      16 ..     118     128 ..     117     130 .. 0.78
   2 !   23.3   0.0   2.5e-08     5e-05       6      60 ..     480     538 ..     475     540 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 6.4
                  SSHHHHHHHTT CS
   PF00536.25   6 edVgeWLesig 16 
                  ed + WLe++ 
  MMETSP0890-20130614|40625_1 118 EDAAAWLEELV 128
                  67889***985 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 2.5e-08
                  SSHHHHHHHTT-.GGGHHHH.HCT--SHHHHTT-..-HHHHHHH-------HHHHHHHH CS
   PF00536.25   6 edVgeWLesigl.gqYvdnF.rageidgdallll..teedLeklgvtllGHrkkIlssI 60 
                   d+g W+e+++l ++ + +F +ag+ d++++  +  t+edL  +gv ++ Hr  +  +I
  MMETSP0890-20130614|40625_1 480 LDLGTWIEALRLpPETTLKFkQAGYNDVEMIFDMglTDEDLDFIGVINPMHRRLLRGAI 538
                  5899********999999*************985448999************9887666 PP

>> PF07647.12  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     2e-07   0.00039       8      58 ..     481     534 ..     474     539 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2e-07
                  HHHHHHHHT--.CCSHHHHHHHTS-SCTCC..CSSCHHHHHCCCHHCHHHHHHH CS
   PF07647.12   8 dvaeWLrsigl.kqYtenFrdqgitggell..lrlteedLkrlGitsvghrkki 58 
                  d++ W ++++l ++ t +F+++g+   e++  ++lt edL  +G+ ++ hr+ +
  MMETSP0890-20130614|40625_1 481 DLGTWIEALRLpPETTLKFKQAGYNDVEMIfdMGLTDEDLDFIGVINPMHRRLL 534
                  7899**********************************************8754 PP

>> PF12814.2  Meiotic cell cortex C-terminal pleckstrin homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.3e-05     0.065       6     118 ..     264     371 ..     261     375 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-05
    PF12814.2   6 iaqtmvGeylyKyvrrrkskgsekrhkRyvwvhpyertllWsskkpksekasekksksvkiesvlsvkdenplpkgl.ekanfnksililtpkralkltaetrerhevWltaLs 118
                  i++t +  +l K +r++     ++  kR++ v+  ++tl W s kp  ++a    + ++  e v     +     ++ +++n    i+  + k +l+l a ++   ++Wl+aL+
  MMETSP0890-20130614|40625_1 264 IETTRMAGWLNKKTRNS---LRSRYNKRWFVVK--RKTLTWFS-KPGIANAMGRLALAANHELVSTGPTKFAIYATSsSTKNVGSGISSRSRKAVLELSAVDETAKDMWLQALQ 371
                  778888889***99999...6677899**9986..68999*99.888888887666555555555544443333333144457788888999999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:01.49
# Mc/sec: 1119.37
//
Query:       MMETSP0890-20130614|40631_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       107  (0.00782621); expected 273.4 (0.02)
Passed bias filter:                      105  (0.00767993); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.61
# Mc/sec: 259.28
//
Query:       MMETSP0890-20130614|40634_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   14.8   5.3        0.2   11.4   1.3    2.2  2  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.3   1.5e-05       0.2      16      39 .]      22      45 ..      18      45 .. 0.91
   2 ?    4.9   0.1    0.0017        24      16      35 ..      54      73 ..      51      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
                 EEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27 16 cvafspdgpllasgSrDgtirlWd 39
                 +++ s d+++ +++ +D+t++lWd
  MMETSP0890-20130614|40634_1 22 ACDLSTDSTRYITALWDHTVCLWD 45
                 68889999999************9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0017
                 EEEEESSSTEEEEEETTSEE CS
   PF00400.27 16 cvafspdgpllasgSrDgti 35
                  +a s +g+++++  +Dg++
  MMETSP0890-20130614|40634_1 54 GCASSSHGSRIITTAYDGKV 73
                 57888889**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       203  (0.0148479); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.37s 00:00:00.70 Elapsed: 00:00:00.78
# Mc/sec: 264.21
//
Query:       MMETSP0890-20130614|40630_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-58  197.7   0.0    2.9e-58  197.4   0.0    1.1  1  PF00155.16 Aminotransferase class I and II
     0.0042   17.1   0.2      0.021   14.9   0.0    1.9  2  PF06426.9  Serine acetyltransferase, N-terminal


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   4.3e-62   2.9e-58     101     363 .]       2     271 ..       1     271 [. 0.98

  Alignments for each domain:
  == domain 1    score: 197.4 bits;  conditional E-value: 4.3e-62
                  S--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-..HHHHHHHHHHH-S-EEEEE--CCCCTBGGG----EEEE-.......HHHHHHHHHCCTTTS..-----CCHHHHCTSHHHHHH...HHHHHHHHHHHHHHHHHHCC.CC........-TCHHHH----EE-----HH......HHHCCH---BE--........---EE-----TTTHHHHHHHH CS
   PF00155.16 101 ptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...eleemrqrlqkrrkelrdeLael........glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                   t+a++ ni+r +g+  ++y++  + + +ld+++l+++l++ap++++   v+l+ ++hNPtG++++++++ k+++++ +++l++++D aY gf++g+   da++ r++ve++     + s+sK+fGl+ eRvG++ ++        +v+ +l+k++r+++s  ++ ++++va +l+d+ lk s   +l  m++r+  +r elr++L++         ++++++sq+gmf++t+l+++      ++L+ ++++y++         ++Ri++Agl++++l+++++a+
  MMETSP0890-20130614|40630_1   2 ITWANHWNIARDAGLSAIPYRYLVPGSTNLDVQGLLDDLRTAPQNSI---VLLHLCAHNPTGVDPDRQTWIKIAEIIAQNHLFPIFDSAYLGFASGDVdnDAYPFRLFVEKGLMPWACVSFSKNFGLYSERVGAVHATLgsmdespKVLGHLKKIARAMYSnpPAFGARLVAHILNDPTLKTSwqhSLGHMAERISMMRAELRKRLEKQlkahpkysDWSHVTSQIGMFSFTGLEPH----HVQALRHKHHIYILD--------NGRISMAGLNHNNLQQFADAV 271
                  59*********************************************...**********************************************999999999*********9*********************99999****************************************99**9********************999****************************....8899***********........9****************9986 PP

>> PF06426.9  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     3e-06     0.021       5      71 ..     150     216 ..     147     221 .. 0.93
   2 ?   -0.8   0.0      0.23   1.6e+03      31      70 ..     265     306 ..     258     319 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3e-06
                  HHHHHHHHHHH-TT---HHHHHTTT-SSHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHH-TTHHH CS
    PF06426.9   5 iraeAeeaaekeplLasflyatilshkslesalafllanklasselsaealrelfeealaadpeive 71 
                  +++ A+++ ++ p++++ l a+il+ ++l+ +  + l +  +  ++ +  lr+ +e+ l+a+p++++
  MMETSP0890-20130614|40630_1 150 LKKIARAMYSNPPAFGARLVAHILNDPTLKTSWQHSLGHMAERISMMRAELRKRLEKQLKAHPKYSD 216
                  6788999******************************************************998765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.23
                  SSHHHHHHHHHH.HH---TTS-HHHHHHHH.HHHHHH-TTHH CS
    PF06426.9  31 kslesalaflla.nklasselsaealrelf.eealaadpeiv 70 
                  +++++a+  +l  +++++++++ ++ ++ + ++a ++d +++
  MMETSP0890-20130614|40630_1 265 QQFADAVVDVLTdAQIHNQAMPDQTNEQNIpQNASSEDASLG 306
                  456667766665246778888877665544144444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       743  (0.0543446); expected 273.4 (0.02)
Passed bias filter:                      500  (0.0365711); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.96
# Mc/sec: 846.21
//
Query:       MMETSP0890-20130614|40640_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-06   25.4   3.2    2.2e-05   24.0   0.2    2.8  3  PF00400.27 WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.039   12.6   0.0      0.049   12.3   0.0    1.1  1  PF08801.6  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.22   1.5e+03      26      36 ..       2      12 ..       1      12 [. 0.79
   2 !   24.0   0.2   3.2e-09   2.2e-05       7      39 .]      33      63 ..      30      63 .. 0.88
   3 ?    0.2   0.0       0.1     7e+02       9      22 ..     100     113 ..      92     118 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.22
                 EEEEETTSEEE CS
   PF00400.27 26 lasgSrDgtir 36
                 +  gS+Dg ++
  MMETSP0890-20130614|40640_1  2 IYAGSSDGALK 12
                 678****9765 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 3.2e-09
                 EESSSSSEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27  7 lrgHtspVtcvafspdgpllasgSrDgtirlWd 39
                 +  H++++ ++       +l+sgS Dgtir+Wd
  MMETSP0890-20130614|40640_1 33 FPNHSGSIVSLVHREG--ILCSGSTDGTIRIWD 63
                 6778888888888888..**************9 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.1
                  SSSSSEEEEEEESS CS
   PF00400.27   9 gHtspVtcvafspd 22 
                  g  +++ c +fs +
  MMETSP0890-20130614|40640_1 100 GSDNTIICHDFSSP 113
                  55667777777665 PP

>> PF08801.6  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.1e-06     0.049     189     223 ..      37      70 ..      10      75 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.1e-06
    PF08801.6 189 eteivqlridssrrilytlsskgtirvwdlsp.sge 223
                  ++ iv+l+  +  +il + s++gtir+wdl+p s++
  MMETSP0890-20130614|40640_1  37 SGSIVSLVHRE--GILCSGSTDGTIRIWDLKPrSDK 70 
                  34477776655..59****************95544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       165  (0.0120685); expected 273.4 (0.02)
Passed bias filter:                      159  (0.0116296); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 565.18
//
Query:       MMETSP0890-20130614|40636_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-33  113.5   8.7    3.8e-17   62.0   0.5    3.2  2  PF02181.18 Formin Homology 2 Domain
  ------ inclusion threshold ------
      0.029   13.4   0.5       0.15   11.1   0.0    2.2  2  PF04426.7  Bul1 C terminus


Domain annotation for each model (and alignments):
>> PF02181.18  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.5   5.6e-21   3.8e-17      27     208 ..      70     284 ..      51     288 .. 0.86
   2 !   50.8   1.3   1.5e-17     1e-13     222     370 ..     318     497 ..     312     498 .. 0.94

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 5.6e-21
                  SHHHHTTCHHHHCTSHHHHHHHHTBSC--HCCH--................---HCCCCTTCCESSS-HHHHHHHHHHCH..HH.TS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHH..H.....TTCCC........GTTB-HHHHHHHCCCT...CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH- CS
   PF02181.18  27 tvWdkleeesfekdldldeleelFsakakkksskk................ekkkkkkkkkkkikvLdpkrsqnvaIllr..kl.klpaeeivqaileldeevlslellenLlkmlPtkeelekl..k.....eykgd........eskLseaeqFllelvk...iprleeRleallfksefeeeveelkrkletleaaseeLreseklkklLeliLal 208
                  ++W++++  +    +  +ele lF + a  +s+ +                +k++++++++     L++kr++n+aI+l   kl  l+++ + +a+  l+ ++++  +le+Ll  +Pt ee++kl  +     +   d         ++ +eae+F+l++       r+   +++l+f ++++e v++l+++ ++l+ as+  ++s  lkk+L  iL+l
  MMETSP0890-20130614|40636_1  70 SIWADVQMLN-GIHVHRQELEALFVQSAGSPSQHGrnnqsknettqsgnygKKRSSANRNNIDPVALSRKRATNIAIALAggKLqALSPKFVRKALRYLEIDAFDRAQLEALLAAAPTAEEEKKLqsAlakrqN---DlekscrdsFAQFAEAERFMLRVPLrlgLRRYYRTVHSLKFCETLDERVSSLTEQTTALTHASQLTQSSDRLKKVLTYILKL 284
                  3999998874.559999**********9999999999************99999999999999999*************7335567888899999999999************************751444440...24555666799**********98442347899999*********************************************96 PP

  == domain 2    score: 50.8 bits;  conditional E-value: 1.5e-17
                  ----GGGGGGCCCSB-STTTSBHHHHHHHHHHT.TSGGGGGHHHHTTT..HHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHCHHT.............................TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHH CS
   PF02181.18 222 kGFkLdsLlkLsdvKstdnkttLLhfvvkivee.klpevldlsselsn..vekaakvdleelekdvkklekglkklekeleksee.............................keeesdkfvekleefleeaeeklkkleeelkeakelfkelteYfgedpkevspeeffkilreFlnef 370
                  +GF++ sLl+L ++K+ d++t+ L+fvv ++++ + ++ l l++el+   +++aa+v + + ++++k l++gl++l++ + ++++                             + +e+d+ ++    f+e ae +++  + +l+ea+  f++++eYfgedp+ ++p+eff++l  F+ +f
  MMETSP0890-20130614|40636_1 318 FGFRIASLLRLHELKAFDRRTSALDFVVGLMIKnQDQHPLALEEELKRmpLTQAARVTMSSCVQELKVLQSGLDRLRRLVHNEDDhlttpndaavatirlddpdwnrellssdsEIDEQDNTNPDALAFFELAEVRVNDAQVQLEEATLAFDSTLEYFGEDPS-MTPNEFFSTLVAFVDKF 497
                  7***************************987773666779999***963379*****************************99999*************************988889999******************************************6.*************9987 PP

>> PF04426.7  Bul1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.15     116     189 ..      55     129 ..      48     153 .. 0.76
   2 ?   -0.8   0.1     0.088     6e+02      14      50 ..     512     550 ..     500     606 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
    PF04426.7 116 stkreLkFtdfis.kqlanDveslanlkvkvtelnevfkkqvetlkdesesslseksnsssssklssstssasst 189
                   ++  L+F d +  +++  Dv+ l  ++v+ +el+  f +   + +++ ++ +s++++++s++  ++++s+++++
  MMETSP0890-20130614|40636_1  55 VKQLPLDFIDSVAdNSIWADVQMLNGIHVHRQELEALFVQSAGSPSQHGRNNQSKNETTQSGNYGKKRSSANRNN 129
                  466678898887526899***********************9999999988888877777777766655544433 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.088
    PF04426.7  14 seeekepLekldikLtciqsnnslph..sppeiqsitte 50 
                   e+ k+  + +d kL  + s+ +  +   pp i+  +t 
  MMETSP0890-20130614|40636_1 512 EERAKKRVSSIDAKLAAMASQTGQCQqaTPPRIRRANTA 550
                  456677777777777777666554432367777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       679  (0.0496635); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:01.36
# Mc/sec: 1259.85
//
Query:       MMETSP0890-20130614|40672_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.0   2.5      0.013   15.0   1.7    1.7  2  PF00642.19 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
        1.4    7.7   7.3        1.4    7.7   5.1    1.2  1  PF02535.17 ZIP Zinc transporter
        2.9    7.3  13.1        4.1    6.8   9.1    1.3  1  PF04720.7  Protein of unknown function (DUF506)
        5.8    6.7  28.1         13    5.6   4.5    2.3  2  PF13863.1  Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> PF00642.19  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.5   8.4e+03       6       9 ..       6       9 ..       5      10 .. 0.66
   2 ?   15.0   1.7   3.7e-06     0.013       6      26 ..      22      42 ..      18      43 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.5
                -SGG CS
   PF00642.19 6 Crff 9
                C+ +
  MMETSP0890-20130614|40672_1 6 CKKY 9
                7777 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 3.7e-06
                 -SGGGG----------SS--- CS
   PF00642.19  6 CrffartGtCpyGdrCkFaHg 26
                 C f+     C+ G++C+F+H+
  MMETSP0890-20130614|40672_1 22 CAFYGSAQGCRNGEKCQFIHS 42
                 666666668***********8 PP

>> PF02535.17  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.1   0.00041       1.4     105     172 ..      60     125 ..      19     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00041
   PF02535.17 105 sdahshgegrghdkehsettsdeaskskeskvenaeseeeeteeeesdhdheskeksesdkeselaaa 172
                   ++ +h +++  +ke++  +sde+++ ++  +e++  ++ ++++ees+ + ++keks+s++ +el+++
  MMETSP0890-20130614|40672_1  60 FKDNVHLHEKEASKEEELNNSDEENSVSS--SESNGAHDDNENSEESSNSEPEKEKSHSSEIEELRQQ 125
                  35666667777777766666666665555..3444444444455555555555555555555555544 PP

>> PF04720.7  Protein of unknown function (DUF506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.1    0.0012       4.1      11      99 ..      82     165 ..      57     175 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0012
    PF04720.7  11 eeneskedksfsgsgdessdeedeessssednkevseelkkllestsveererrlleakvakaveeasklvkkkdksvlrkkvaslLre 99 
                  een s+++ + +g++d++++ e++++s+ e++k+ s+e+++l +  + e +++  l+ ++++  ++ +    + ++++lr+++a+l re
  MMETSP0890-20130614|40672_1  82 EEN-SVSSSESNGAHDDNENSEESSNSEPEKEKSHSSEIEELRQQLQAERQRKVKLLSEITRKEKTPE----QIEAERLREQIANLRRE 165
                  222.2333234555555555555555555667788899999999998888886666666666655554....45666777777766554 PP

>> PF13863.1  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.4    0.0042        15      27     106 ..      61     142 ..      52     145 .. 0.67
   2 ?    5.6   4.5    0.0037        13      73     107 ..     142     176 ..     139     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0042
    PF13863.1  27 eeelkereeelekkqeelqeslikfnkflkdneak..reraekkaeeekkekkekeeeikklkaqleelkaeiekleeklee 106
                  + +++ +e+e  k++e +++++++  +  ++n a    e+ e++ ++e ++ k+ ++ei++l++ql++ ++++ kl  ++ +
  MMETSP0890-20130614|40672_1  61 KDNVHLHEKEASKEEELNNSDEENSVSSSESNGAHddNENSEESSNSEPEKEKSHSSEIEELRQQLQAERQRKVKLLSEITR 142
                  55555555555555555555555555555555443113445677888888899999*******************9999876 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0037
    PF13863.1  73 kkekkekeeeikklkaqleelkaeiekleekleey 107
                  +kek   + e ++l++q+++l++e+e+ +++ ee 
  MMETSP0890-20130614|40672_1 142 RKEKTPEQIEAERLREQIANLRRENERKRKEMEEA 176
                  67777778999*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2260  (0.165301); expected 273.4 (0.02)
Passed bias filter:                      669  (0.0489321); expected 273.4 (0.02)
Passed Vit filter:                       136  (0.00994734); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.43s 00:00:01.23 Elapsed: 00:00:01.23
# Mc/sec: 362.38
//
Query:       MMETSP0890-20130614|40671_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-08   32.6   0.1    1.7e-07   31.4   0.1    1.4  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.2e-11   1.7e-07      74     209 ..      66     191 ..      62     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.2e-11
                  HHHH----SEEE...EEEEE..E---S-----E.EEE-GGGTS-......EE-.---EE-EEEESS-B-S----EEEE---------.......................-EEE----..............----........ CS
    PF05721.8  74 lvrailgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflp......tdp.eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdk.sR 209
                   vr++lg+++y    l +     +  p  G+  q+ H D  +l+      + + + ++++v + l+d + e G++ f+P +H   +++l+ ++ + +++a           ++ ++     da++f+ r++H++ aN++ + sR
  MMETSP0890-20130614|40671_1  66 TVRNVLGPNCYL---LKRGA--LIALP--GAHLQSAHSDGKHLFdddmnvIGHlPAHCLTVFVPLCDLSTELGPTEFYPDTHSGNNSQLASDAMRGRAPAV----------TFAHAKAF-QDAIIFDYRIVHRGLANTNRSeSR 191
                  566777777765...55555..55556..8888**********96665554448899999************************99987766666666655..........44444332.3***************99877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 787.89
//
Query:       MMETSP0890-20130614|40674_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-10   39.3   0.0    9.4e-10   38.7   0.0    1.3  1  PF04055.16 Radical SAM superfamily
      2e-06   27.7   0.0    3.6e-06   26.9   0.0    1.4  1  PF13394.1  4Fe-4S single cluster domain
     0.0072   16.3   0.0      0.011   15.7   0.0    1.3  1  PF13353.1  4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> PF04055.16  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.1e-13   9.4e-10       2     157 ..      62     223 ..      61     230 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 2.1e-13
                  S-CCEESS--TT-CCCTCHHHHHHHHHHHHHHHHHHHHH....H.TCS-.CEEEEE---SGGGTTTHHHHHHHHHHCH..EECCEEEEEE-SSCH.HHHHHHHHHTT-SEEEEEEESSSHH...HHHHCCTCTS-HHHHHHHHHHHHHHSSETEEEEEEEECTTTCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF04055.16   2 vvtrgCnlrCsfCanpetsregrgrsrsveeileevkel....k.eekg.vkevtltGgepllypdfvellerlakla..lpgirialetngtlpdeeileelaelgvdrvslglesgdee...kvlklmrrghtfeevlealeklreagikrvvdfivglpgetde 157
                  + + gC+ +C+fCa++++   g  r ++  ei e+v ++    k +e++  ++v++++gepll+ ++v++ ++ ++        +i+++t g+   + i+++  e     ++++l+++++     +l  + r + ++  ++a ++  e+ ++r++    ++ g +d+
  MMETSP0890-20130614|40674_1  62 SSQAGCAMGCVFCATGQM---GFRRQLTATEIFEQVARYdaelKqKEQRlSNVVFMGMGEPLLNYKEVSQSLKMIQDFlgIGARKITVSTVGVV--PGIAKLSEEHPNVGLAISLHAATNAersALLPANARYGGLDPLMRAAKNHCELTGRRISFEWALVQGINDD 223
                  6789************85...555555555555555443111133334448899999*******************9999999***********..57777777777*************99976666666999999999999999999888899999999999987 PP

>> PF13394.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     8e-10   3.6e-06       6      91 ..      65     153 ..      63     177 .. 0.67

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 8e-10
    PF13394.1   6 agCnlkCkgCdtkstwdfnggkpftaealaeiie.....lkekkikpqgvvltG.GEPllqlne.eallelikalkeegpekeialetngtle 91 
                  agC + C +C t  ++ f+  + +++e  +++ +     lk+k+++ ++vv++G GEPll+++e ++ l++i+ +   g   +i++ t g ++
  MMETSP0890-20130614|40674_1  65 AGCAMGCVFCAT-GQMGFR-RQLTATEIFEQV-ArydaeLKQKEQRLSNVVFMGmGEPLLNYKEvSQSLKMIQDFLGIG-ARKITVSTVGVVP 153
                  79*********9.667772.223333333333.3366777888888889**********65443144555666555555.6778888877766 PP

>> PF13353.1  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.4e-06     0.011      10      80 ..      62     134 ..      53     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.4e-06
    PF13353.1  10 lfvsGCnlkCkgCfnketwdfkkgkkft.kelleeiiedlkn..ekiegltllG.GEPllpenaeallellkrvk 80 
                     +GC + C  C + ++   ++ + ++  e +++  ++lk+  ++ + ++++G GEPll  n++++ + lk ++
  MMETSP0890-20130614|40674_1  62 SSQAGCAMGCVFCATGQMGFRRQLTATEiFEQVARYDAELKQkeQRLSNVVFMGmGEPLL--NYKEVSQSLKMIQ 134
                  5578**********99998866666665656666666666642366679999999*****..9998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       372  (0.0272089); expected 273.4 (0.02)
Passed bias filter:                      333  (0.0243563); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.42s 00:00:01.02 Elapsed: 00:00:00.76
# Mc/sec: 955.39
//
Query:       MMETSP0890-20130614|40678_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.052   12.1   0.0      0.081   11.5   0.0    1.2  1  PF00676.15 Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> PF00676.15  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.9e-06     0.081     221     282 ..      15      79 ..       2      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.9e-06
                  EEE-------STT--GGGTS-CHHHHHHHHCC-HH...HHHHHHHHHTTSS-HHHHHHHHHHHHH CS
   PF00676.15 221 elvtYRyggHsesDdpstyrtreeveevrkkkdpi...krlkehlvkkgvvseeelkeiekevrk 282
                   +  +R++ H  + ++  ++ ++e++ v+++ d i   + l++ l+ + +v+ +el+ei+k +++
  MMETSP0890-20130614|40678_1  15 AAQVFRLHAHILQQEALCTKLSQEYQRVQAELDSIdeaASLAHVLQAELLVKTQELEEINKHIKQ 79 
                  46789**************************9999333469999*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       931  (0.0680954); expected 273.4 (0.02)
Passed bias filter:                      605  (0.044251); expected 273.4 (0.02)
Passed Vit filter:                        65  (0.00475424); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.92
# Mc/sec: 549.60
//
Query:       MMETSP0890-20130614|40675_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.40s 00:00:00.93 Elapsed: 00:00:00.86
# Mc/sec: 741.20
//
Query:       MMETSP0890-20130614|40679_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       368  (0.0269163); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.71
# Mc/sec: 567.03
//
Query:       MMETSP0890-20130614|40677_1  [L=1058]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       994  (0.0727033); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.51u 0.40s 00:00:01.91 Elapsed: 00:00:01.05
# Mc/sec: 2414.61
//
Query:       MMETSP0890-20130614|40688_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   30.0   0.2      5e-07   30.0   0.1    1.1  1  PF12708.2 Pectate lyase superfamily protein
  ------ inclusion threshold ------
      0.076   10.9   0.0      0.076   10.9   0.0    1.1  1  PF03718.8 Glycosyl hydrolase family 49


Domain annotation for each model (and alignments):
>> PF12708.2  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   7.3e-11     5e-07       9      59 ..      17      70 ..      11      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 7.3e-11
    PF12708.2  9 AkgDGvtDdtaAiqkAicaaattggatVyfPaGtYlissp.....iiipsnttlvG 59
                 ++ +G++++t  +q A+  ++ ++++++yfP+GtYl+        i++  +  ++G
  MMETSP0890-20130614|40688_1 17 IDATGKKNNTINLQQAL--DNIPDNKILYFPPGTYLTGPLtlrgnIYLAAGAKIQG 70
                 6789*************..*****************98866666666666666666 PP

>> PF03718.8  Glycosyl hydrolase family 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.1e-05     0.076     230     272 ..      37      73 ..       8      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.1e-05
                  ---SEEEE----EEB-S---EEE-TT--EEEE-----EE--EE CS
    PF03718.8 230 vseeiiyfrPGvyymgsdqhivlssnvkWvylaPGayvkGave 272
                    ++i+yf+PG+y  g+   ++l  n   +yla Ga ++G+++
  MMETSP0890-20130614|40688_1  37 PDNKILYFPPGTYLTGP---LTLRGN---IYLAAGAKIQGTID 73 
                  4578*********9887...678887...79********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       302  (0.0220889); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.41s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 350.24
//
Query:       MMETSP0890-20130614|40695_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    8.3   0.0        1.6    8.3   0.0    2.6  2  PF05320.7 Poxvirus DNA-directed RNA polymerase 19 kDa subunit


Domain annotation for each model (and alignments):
>> PF05320.7  Poxvirus DNA-directed RNA polymerase 19 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00012       1.6     126     147 ..      29      50 ..      20      56 .. 0.90
   2 ?   -2.6   3.7      0.26   3.5e+03      12      53 ..     113     154 ..     104     164 .] 0.47

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00012
    PF05320.7 126 egtCPivieknGellsvkdfdk 147
                   ++CPiv + +  lls+ d+d 
  MMETSP0890-20130614|40695_1  29 TEVCPIVFTLDSSLLSTLDYDD 50 
                  579*****************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.26
    PF05320.7  12 sdddeeeeyeeeeedeedaeslessdvsslkqsdykvesase 53 
                  ++ +++ +y+eeee++  +  l s + s+ +++d  v++  e
  MMETSP0890-20130614|40695_1 113 EKKEHRGDYKEEEESKGGKVLLLSISSSDEEEADHTVTTYAE 154
                  334444566666666554444444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      421  (0.0307929); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.39s 00:00:00.86 Elapsed: 00:00:00.72
# Mc/sec: 545.84
//
Query:       MMETSP0890-20130614|40700_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    7.1  12.5      0.082   12.7   2.0    2.4  3  PF14015.1 Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.0     6e-06     0.082       4      77 ..      32     101 ..      29     106 .. 0.77
   2 ?   -0.1   0.0     0.059   8.1e+02      48      73 ..     100     125 ..      92     129 .. 0.73
   3 ?   -0.8   1.5     0.096   1.3e+03      49      55 ..     143     149 ..     105     165 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6e-06
    PF14015.1   4 idwydkkaerarrrynllriitiilgvlaavvpilvslnslgagsnwlkwvtvilsalvailaslatffklker 77 
                  i++++ ++   +++   ++++ + l ++   +++ +s++  + + ++++++++ +sa+++il+  a++ +++++
  MMETSP0890-20130614|40700_1  32 IAHLEPRSIIPQNKAATAMMALVFLPTF---LAA-TSVAFYTKNNAQFALAAAAFSAIAIILTDAANRDRFQAT 101
                  6666666777777777777777776666...444.555888899*******************99999999876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.059
    PF14015.1  48 snwlkwvtvilsalvailaslatffk 73 
                  +  +k + ++l+++++i+a   ++fk
  MMETSP0890-20130614|40700_1 100 ATTFKRLGLGLGIALVISATTGGLFK 125
                  45567777788888888888777776 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.096
    PF14015.1  49 nwlkwvt 55 
                    +++++
  MMETSP0890-20130614|40700_1 143 VLVTAAA 149
                  1111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       672  (0.0491516); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.81
# Mc/sec: 494.06
//
Query:       MMETSP0890-20130614|40716_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-05   24.2   0.0      4e-05   23.5   0.0    1.3  1  PF00595.19 PDZ domain (Also known as DHR or GLGF)
  ------ inclusion threshold ------
      0.012   15.1   0.5      0.036   13.7   0.3    1.9  1  PF00111.22 2Fe-2S iron-sulfur cluster binding domain
      0.096   12.0   0.0       0.24   10.7   0.0    1.5  2  PF04008.9  Adenosine specific kinase


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.8e-09     4e-05      10      77 ..      18      84 ..      11      87 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 8.8e-09
                 SH---EEEESSTTSSSSEEEEESTTTHHTTTTS.BSTTCEEEEETTEBGTTSHHHHHHHHHHTHHS..EEE CS
   PF00595.19 10 gglGfslkggsdkrdkgifvsevvpggaaeagg.lkeGDkIlsvNgvdvenvshdeavqaikgkkg..evt 77
                 ++lG+ l + s+    g++++ev+  g+a +   +++G  I++v+++d ++ s++++   i  +++  e++
  MMETSP0890-20130614|40716_1 18 KPLGILLEEISE----GCIIAEVLDEGSASKRDdVEAGMFIVAVGDTDCSGKSLEDVMTTIAAASSpvEIS 84
                 578999998777....**********66666666******************************9955555 PP

>> PF00111.22  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   7.8e-06     0.036      18      48 ..     114     146 ..      93     155 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.8e-06
                  BHHHHHHH.T-TTTGTTSS----.SSTTEEEEE CS
   PF00111.22  18 tlldaaee.nggidipysCgggg.CgtClvevn 48 
                  tll+a ++     ++ + C g+g Cg C+v++ 
  MMETSP0890-20130614|40716_1 114 TLLEAGQKvYDFKGTLMNCNGAGqCGLCAVDIP 146
                  366666555556778899***778******986 PP

>> PF04008.9  Adenosine specific kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.49   2.2e+03     109     132 ..      19      42 ..      15      58 .. 0.68
   2 ?   10.7   0.0   5.3e-05      0.24      94     149 ..      65     117 ..      62     122 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.49
                  --B---------------B----- CS
    PF04008.9 109 plevivaeteqgrgvlgvvDGasp 132
                  pl +++ e ++g  +  v+D  s+
  MMETSP0890-20130614|40716_1  19 PLGILLEEISEGCIIAEVLDEGSA 42 
                  667777777777777777774333 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.3e-05
                  HHHHT----SEEESS--B---------------B---------------------- CS
    PF04008.9  94 kavpevcrifaatanplevivaeteqgrgvlgvvDGaspkgveteedkkeRkellr 149
                  k++++v++  aa++ p+e+     +++  +l vvDG + + v + +  + Rk ll+
  MMETSP0890-20130614|40716_1  65 KSLEDVMTTIAAASSPVEIS---MKTDYCLLTVVDGENKAFVTARQGSNLRKTLLE 117
                  7789999999*******985...566789************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       329  (0.0240638); expected 273.4 (0.02)
Passed bias filter:                      305  (0.0223084); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.43s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 679.69
//
Query:       MMETSP0890-20130614|40718_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      477  (0.0348888); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.78
# Mc/sec: 786.50
//
Query:       MMETSP0890-20130614|40741_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-35  120.7   0.0    1.1e-34  119.2   0.0    1.8  2  PF00270.24 DEAD/DEAH box helicase
    9.3e-17   60.5   0.2    3.7e-16   58.6   0.0    2.1  2  PF00271.26 Helicase conserved C-terminal domain
      6e-11   41.6   0.4    1.6e-10   40.2   0.3    1.7  1  PF13959.1  Domain of unknown function (DUF4217)
    2.3e-06   27.4   0.0    7.1e-06   25.8   0.0    1.8  1  PF04851.10 Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.065   12.3   0.0       0.12   11.4   0.0    1.4  1  PF02562.11 PhoH-like protein
        0.3   11.0   3.5        1.9    8.4   1.0    2.9  2  PF13401.1  AAA domain


Domain annotation for each model (and alignments):
>> PF00270.24  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0     5e-38   1.1e-34       1     170 [.     133     308 ..     133     311 .. 0.87
   2 ?   -2.5   0.0       1.2   2.7e+03      48     106 ..     373     435 ..     356     436 .. 0.47

  Alignments for each domain:
  == domain 1    score: 119.2 bits;  conditional E-value: 5e-38
                  -HHHHHHHHHHHSS-EEEEEC-TT---HHHHHHHHHHHHHH..HTTSTSEEEEEESSHHHHHHHHHHHHHHTTT..SS.EEEEETTSSBHHHHHHHHHT..-SEEEEEHHHHHHHHHHCCH.HT..TTEEEEEECTHHHHHCTTTHHHHHHHHHH..SHHTTTSEEEEEESS-T.HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxx RF
   PF00270.24   1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqilletlkkttikkalivaPtreLaeqtlnnlkkfkky..pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nl..sqvrllVlDEadrllsqgfsdqlnqilqi..lcdgkrlqvivlSATlp.kdv 170
                  t++Q+ea+ ++ ++++ l++a+TGsGKTla+++p+l+ l+    +++   a+i+aPtreL+ q+++ +++++     ++ + +i+gg   +  ++ +l++g  i+ +Tpgrl+d++++++      +q+++++lDE+drll+ g ++q++qi  +   +++k+l+ iv++ATl+ + v
  MMETSP0890-20130614|40741_1 133 TSVQREAFATLKKKKSALIVAPTGSGKTLAYALPMLDSLKGR-SRDQGLGAVIIAPTRELCVQICQAITRVGRFfdVGIVAGAITGGERRK-SEKARLRKGLVILCATPGRLLDHLKSTEVlVRahLQLSWFILDEVDRLLDLGLGPQVDQIATKllSHRPKQLHSIVVTATLDaRVV 308
                  689******9999************************99664.467888*******************99999988889999999999966.888899999****************95542223477999********************999843456699**********95555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.2
                  TSEEEEEESSHHHHHHHHHHHHHHTTT..SS.EEEEETTSSB.HHHHHHHHH..T..-SEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx.xxxxxxxxx..xxxxxxxxxx RF
   PF00270.24  48 ikkalivaPtreLaeqtlnnlkkfkky..pklrvlliiggva.lardqlsvl..dngvdivvgT 106
                  + k+l+ + t + ae ++  +++++     +l + l +gg++ ++r+q+      ++++i+ +T
  MMETSP0890-20130614|40741_1 373 ELKTLVFTSTCAAAELHYGLASSLLGSgdNRLAERL-HGGMDhIERKQAYESfcTGKANILFAT 435
                  335555555555555555555555554322233322.444443444444333456666666655 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         2   4.6e+03      67      77 ..     195     205 ..     189     205 .. 0.85
   2 !   58.6   0.0   1.6e-19   3.7e-16      10      78 .]     405     475 ..     400     475 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2
                  HHHH------T CS
   PF00271.26  67 yiQriGRtgRa 77 
                    Q+i R+gR+
  MMETSP0890-20130614|40741_1 195 ICQAITRVGRF 205
                  569999***95 PP

  == domain 2    score: 58.6 bits;  conditional E-value: 1.6e-19
                  EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STT..ESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26  10 vailhgelpqnereeileqfnagkskvlvatnvaerGidlpd..vnvVinfdlprsvtsyiQriGRtgRag 78 
                  + +lhg++ + er++  e+f +gk ++l+at++a+rG+d+    v++V ++d+pr  + +++r GR++Rag
  MMETSP0890-20130614|40741_1 405 AERLHGGMDHIERKQAYESFCTGKANILFATDIAARGLDFARarVDWVLHLDPPREISAFVHRSGRAARAG 475
                  5689************************************7522788**********************97 PP

>> PF13959.1  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.3   6.9e-14   1.6e-10       2      62 ..     526     598 ..     525     600 .. 0.94

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 6.9e-14
    PF13959.1   2 iqlqleklvakdrelkelAqkAFvSYlraykehqklk............siFklkkLdlgelAksfGLlelPk 62 
                   ql++++ v ++ el   A++AF ++lray++   ++              F+l+kL+lg+ Ak+f+L e+P+
  MMETSP0890-20130614|40741_1 526 FQLKMQNTVQNNAELLARARDAFAAHLRAYASKPDARlltndaerealaLAFNLRKLHLGHAAKAFALIEAPR 598
                  799****************************885555************9**********************8 PP

>> PF04851.10  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.1e-09   7.1e-06       8      70 ..     136     199 ..     120     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.1e-09
   PF04851.10   8 QeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar........kflflvprkelleqaleef 70 
                  Q+ea   l       ++kk++liv++TG+GKTl +a  +++ ++         +++++p++el+ q  +++
  MMETSP0890-20130614|40741_1 136 QREAFATL-------KKKKSALIVAPTGSGKTLAYALPMLDSLKgrsrdqglGAVIIAPTRELCVQICQAI 199
                  44444444.......4689*****************999999999999******************98887 PP

>> PF02562.11  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.3e-05      0.12       3      34 ..     130     161 ..     128     178 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.3e-05
   PF02562.11   3 kpktkeQkeylealkkndivfaiGpaGtGKTy 34 
                  k  t+ Q+e++ +lkk++  ++++p+G+GKT+
  MMETSP0890-20130614|40741_1 130 KSPTSVQREAFATLKKKKSALIVAPTGSGKTL 161
                  566889*************************6 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.0   0.00085       1.9       3      69 ..     145     222 ..     142     306 .. 0.56
   2 ?   -0.4   0.0      0.45     1e+03      40      87 ..     503     552 ..     480     590 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00085
    PF13401.1   3 sagilvvtGesGvGKTtllrrlarqldeeaeaaekarvvfveapastspkellqkllsalglpakg................r 69 
                  +++++++++++G+GKT+++   + +  +  +   + + +   + a+t  +el+ ++++a+ +  +                 +
  MMETSP0890-20130614|40741_1 145 KKKSALIVAPTGSGKTLAYALPMLDSLKGRS---RDQGLGAVIIAPT--RELCVQICQAITRVGRFfdvgivagaitggerrK 222
                  78999************99876665433222...4444444444444..4555555555555444455555555555555551 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.45
    PF13401.1  40 vv.fveapastspkellqkllsalglpakg.rltteellealqealrrrr 87 
                  ++ +v +p+ ++ ++ + +++ +++l+  +  ++++ell++ ++a +++ 
  MMETSP0890-20130614|40741_1 503 QInRVGLPHLSTFHADADRIADEFQLKMQNtVQNNAELLARARDAFAAHL 552
                  44577788888888999999999998888877788888888887776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.08u 0.38s 00:00:01.46 Elapsed: 00:00:00.85
# Mc/sec: 1956.56
//
Query:       MMETSP0890-20130614|40751_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   13.7   0.1      0.046   13.5   0.0    1.1  1  PF13624.1 SurA N-terminal domain
      0.069   13.0   0.1      0.071   12.9   0.0    1.0  1  PF13623.1 SurA N-terminal domain


Domain annotation for each model (and alignments):
>> PF13624.1  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.8e-06     0.046      27      70 ..       5      48 ..       3      59 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.8e-06
    PF13624.1 27 fgvgsvssakskkavvAkVnGekIsakefsrevkkykrllrnql 70
                 + ++ +  + + ++++Ak  + +Is+k++s++v+   r+++ + 
  MMETSP0890-20130614|40751_1  5 MDWSDLAVSLERDDMIAKALDREISLKDYSKQVDGELRQVEVES 48
                 6677777778999*******************997666665444 PP

>> PF13623.1  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05     0.071      35      77 ..      14      56 ..       2      60 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1e-05
    PF13623.1 35 gesrqqvgevlgekisvqdfqklvdeyqeaikltsqrdleeee 77
                  e  + +++ l+ +is++d+ k vd     + ++s rd +++ 
  MMETSP0890-20130614|40751_1 14 LERDDMIAKALDREISLKDYSKQVDGELRQVEVESVRDYLDQS 56
                 567789*******************999899999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      361  (0.0264043); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.36s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 243.63
//
Query:       MMETSP0890-20130614|40757_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-21   76.8   0.0    1.5e-21   76.6   0.0    1.0  1  PF00069.20 Protein kinase domain
    1.2e-18   67.0   0.0    1.4e-18   66.8   0.0    1.0  1  PF07714.12 Protein tyrosine kinase
  ------ inclusion threshold ------
      0.021   14.4   0.3        0.9    9.0   0.1    1.9  2  PF01636.18 Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   3.3e-25   1.5e-21       9     132 ..       2     129 ..       1     131 [] 0.89

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 3.3e-25
                  ----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHH...HHCCB......-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEE CS
   PF00069.20   9 sGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfeekdelylvleyveggdlfdllk...kegkl......seeeikkialqilegleylHsngiiHrDLKpeNiLld 132
                  +G+ + Vy++k ++++  vA+K+++ +e  ++  ++  +El+++++l+H n++ l++++ +  +l+ v+e+++gg+l+++l+       +        +    +a   +++++ylH n+i HrD+K +N+L+ 
  MMETSP0890-20130614|40757_1   2 KGTTAYVYRGKYREDR--VAIKVFNPSEITEEYVDELGKELHLVATLRHRNVLALYGLCVRPPQLFAVFELCDGGSLASALAdlkF---YdlslggFIDRRLVWAFDAASAVAYLHTNAIWHRDIKIDNFLVA 129
                  69999**********9..****************99999*******************************************5540...3333344455666788899***********************86 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0     3e-22   1.4e-18       9     137 ..       2     129 ..       1     131 [] 0.88

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 3e-22
                  ------EEEEEEETTTTSSEEEEEEEEECT.TSBHHHHHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBH....HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
   PF07714.12   9 eGafGkVvegtlkgekekkevkVavKtlke.saeeeekeefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltl....kdllkfalqiakGmeyLeskklvHrdLaarNvLle 137
                  +G+ + V++g+++      e +Va+K+++  + +ee  +e+ +e++++ +l+h+n++ l+g+c++  +l+ v+e+++gG+L + L + +  +l+l    ++ l +a++ a++++yL+++ + Hrd+   N L++
  MMETSP0890-20130614|40757_1   2 KGTTAYVYRGKYR------EDRVAIKVFNPsEITEEYVDELGKELHLVATLRHRNVLALYGLCVRPPQLFAVFELCDGGSLASALADLKFYDLSLggfiDRRLVWAFDAASAVAYLHTNAIWHRDIKIDNFLVA 129
                  5777889999999......899******6626677779**************************9999*******************96666665222267899****************************97 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0054        25       8      84 ..       3      78 ..       1      87 [. 0.74
   2 ?    9.0   0.1    0.0002       0.9     146     181 ..      94     129 ..      75     131 .] 0.75

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0054
                 -SSEEEEEEEETT.TEEEEEESSC....CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT CS
   PF01636.18  8 Gasnrtyrvttgagryvlrrarpa....raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler 84
                 G++  +yr +  + r++ ++ +p+    ++  el +e++l + L+ +   v +++     +   + lfa++e ++g +l+ 
  MMETSP0890-20130614|40757_1  3 GTTAYVYRGKYREDRVAIKVFNPSeiteEYVDELGKELHLVATLRHR--NVLALYG---LCVRPPQLFAVFELCDGGSLAS 78
                 56666777777778999999999976666666666777777777766..4567777...7888888999999999988876 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0002
                  HHHHHHHHHHHHHHHHC.SS--EEB-SS-SGGGEEEE CS
   PF01636.18 146 eeleervlaalaallpg.aeppvllHgDlhpgNllvd 181
                  ++++  v+a  aa   +     +++H+D++ +N lv 
  MMETSP0890-20130614|40757_1  94 IDRRL-VWAFDAASAVAyLHTNAIWHRDIKIDNFLVA 129
                  45555.88888888888888999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       315  (0.0230398); expected 273.4 (0.02)
Passed bias filter:                      308  (0.0225278); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.34s 00:00:00.75 Elapsed: 00:00:00.57
# Mc/sec: 541.25
//
Query:       MMETSP0890-20130614|40748_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-52  176.2   1.1    1.6e-51  175.2   0.6    1.6  2  PF00233.14 3'5'-cyclic nucleotide phosphodiesterase
    3.5e-12   46.6   0.0    6.9e-12   45.6   0.0    1.4  1  PF01590.21 GAF domain
    6.3e-07   29.4   0.0    1.7e-06   28.0   0.0    1.8  2  PF13492.1  GAF domain


Domain annotation for each model (and alignments):
>> PF00233.14  3'5'-cyclic nucleotide phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.81   3.7e+03      88     116 ..     127     155 ..     123     191 .. 0.80
   2 !  175.2   0.6   3.6e-55   1.6e-51       1     230 [.     312     548 ..     312     555 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.81
   PF00233.14  88 lnilqnlskkdfeelldlvieiilaTDls 116
                  + ++q l+kk   + +d  +e +laT  s
  MMETSP0890-20130614|40748_1 127 VAVIQALNKKTGAQFFDDEDEFVLATLAS 155
                  67889999999999999999999999444 PP

  == domain 2    score: 175.2 bits;  conditional E-value: 3.6e-55
   PF00233.14   1 yHNliHaadVtqtvflllktla.lervltdlevlalviaaliHDvdHrGttNsfqvqskselallyndeSvLEnhHlalaikllqdeelnilqnlskkdfeelldlvieiilaTDlslhlkklkrlkkmveqkkvldld....dkikvlsllltaaDlSnvtkp.lkvskriaelimeEFfeqgdlErelglkpspmcdreka..eveksqvgfideivepvfklladvvekdiqell 230
                  yHN+ H++ V+++ f++ +  + ++++l +++ lal +aa++HDvdH+Gt+N f+++++s+ al+ynd  vLEnhH ++++  l++ +++ l+ ls++++++ +++vi+ ilaTD+s h k+++ l+ +++  ++ d +    + + ++ + ++  Dl n t+p ++v k++  ++++EF  q+ lE +lgl++sp + + ++   +++sq+gfid++v p+     d++++  ++l 
  MMETSP0890-20130614|40748_1 312 YHNFEHGVCVMHASFVVSRISKlISTALFPIDLLALKLAAIGHDVDHPGTNNDFEINTNSHRALIYNDIAVLENHHASFFFITLRKPQCDALCALSRAEYTHFRKIVINSILATDMSRHGKHVQFLRDAADAYHRQDCEetipSSQFLVDTCIHLGDLINSTHPdFSVVKKWGFRVIAEFKYQAALELKLGLPVSPSMTKLETnsDIAHSQLGFIDYVVYPLVAAACDLMPE-LNQLE 548
                  9****************9876526889********************************************************************************************************998855445577778889999**********966********************************998655449*******************9999999.55444 PP

>> PF01590.21  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.5e-15   6.9e-12       6     143 ..      30     149 ..      28     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.5e-15
                  HHHHHHHHHHHCTECEEEEEEEETTTEEEEEEEEEEGHHSHHHHHEECHCCCCCEECCTCTSTEEESSCGGSTTTECHHCTHHCTB--THHHHHHHHH-T-SEEEEEE.-BETTEBEEEEEEEESS-.----HHHHHHH CS
   PF01590.21   6 ldtilrelrellgadrcavalpdldglelylvlgyplsdipqaelslppaggiageviatgrpvvipdvqddprfqdqtlagselrapsgchehymrrlgvrsllavP.llargkliGvlvlhnkspgrpftdddlell 143
                  + ++l++  e + ++ ++++  d+  ++l       + + ++ e+++  ++giag v+ ++++ +i+d+++d rf  +t+ ++              +++++s+l++P l+ rg+++ v+++ nk++g +f dd+ e++
  MMETSP0890-20130614|40748_1  30 VSRLLQIGKEVMACEQVTLFFMDEARGVL-----VAANTMEAKEICVKVGQGIAGSVAYSKKAANIADAYKDNRFDQRTDMET--------------GFRTKSVLCAPvLDCRGECVAVIQALNKKTGAQFFDDEDEFV 149
                  678889999**********7777777777.....68888888999*******************************9999987..............99****************************877777665533 PP

>> PF13492.1  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.8e-10   1.7e-06       5     122 ..      29     156 ..      25     158 .. 0.76
   2 ?   -4.0   0.0       2.9   1.3e+04      45      70 ..     448     473 ..     441     481 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.8e-10
    PF13492.1   5 llerilellaeilgaeraalylldedgnelrlvagiggdprlse...slpedeplvrrvletgeplsvpsldnreglps....esllvvPLvage.eviGvlv.lgsvpeea.fteedlellellasq 122
                  l++r+l++ +e++ +e+++l++ de +++l+++  + ++++  +    +  + +    +++  +++ ++++d+r++ ++    +s+l++P+ + + e+++v+  l+++++ + f++ed  +l +las 
  MMETSP0890-20130614|40748_1  29 LVSRLLQIGKEVMACEQVTLFFMDEARGVLVAANTMEAKEICVKvgqGIAGSVAYSKKAANIADAYKDNRFDQRTDMETgfrtKSVLCAPVLDCRgECVAVIQaLNKKTGAQfFDDEDEFVLATLASE 156
                  7899************************99999888777766333333444444444555555555667788877644433449*********889*******66887777668*****999999985 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2.9
    PF13492.1  45 rlseslpedeplvrrvletgeplsvp 70 
                  + +e++p +  lv +++  g++++ +
  MMETSP0890-20130614|40748_1 448 DCEETIPSSQFLVDTCIHLGDLINST 473
                  45678899999999998888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.39s 00:00:01.35 Elapsed: 00:00:00.94
# Mc/sec: 1544.89
//
Query:       MMETSP0890-20130614|40749_1  [L=718]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      229  (0.0167496); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.52s 00:00:01.43 Elapsed: 00:00:01.07
# Mc/sec: 1608.02
//
Query:       MMETSP0890-20130614|40763_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       556  (0.0406671); expected 273.4 (0.02)
Passed bias filter:                      366  (0.02677); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.61s 00:00:01.12 Elapsed: 00:00:00.71
# Mc/sec: 1123.93
//
Query:       MMETSP0890-20130614|40762_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-10   39.0   0.0    6.8e-10   38.6   0.0    1.2  1  PF01546.23 Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> PF01546.23  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0     5e-14   6.8e-10      72     169 ..      67     305 ..       3     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 5e-14
                  H.............EEEEEECCEEHHHHTCSSE..............................................................................................................................EHHHH.HHHHHHHHHHCCCG.CEEEEEE----THHHHTT..TSEEEEEEE--B-TTTTSTT--B-CCHHHHHHHHHHHHH CS
                  x.............xxxxxxxxxxxxxxxxxxx..............................................................................................................................xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01546.23  72 a.............alglhidlgivgepseedg..............................................................................................................................tendaelvqalekaaeelgl.kveplvsgggtdasfiar.vglgfpmiglgpgngtaHspnEkvdlddlekgievlaell 169
                                +++ hi++g  +e +e+++                                                                                                                              t  d++l   +e++++  g  ++  l+sg+ +das +a+ ++++++m+++++ ng +Hs +E++ ++d++ g++v+++++
  MMETSP0890-20130614|40762_1  67 SdhilknpqakyrgFFEAHIEQGRRLERAEKKVaavssivglrqirlealgeknhagstlmmdrrdsgralvhalaridetftqlvtsgvapsfvwsfpvlhtepgapsiipnhglcvlqyrdpdddiltaateavkhivegstitpivmhndrpplkpTQLDSSLLSCIEDSIRYHGDsDPMILPSGAIHDASSLANyAQIPTAMLFIPSINGISHSFDEDTADEDIAHGAQVYVDAA 305
                  0445555666677789999999999999999999999999999999999999999999*****************************************************************************************************666666**********988798899999999********8899*********************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       248  (0.0181393); expected 273.4 (0.02)
Passed bias filter:                      238  (0.0174078); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.49s 00:00:00.99 Elapsed: 00:00:00.60
# Mc/sec: 1254.09
//
Query:       MMETSP0890-20130614|40766_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    6.1   7.8        7.1    6.0   1.3    2.3  2  PF11241.3 Protein of unknown function (DUF3043)


Domain annotation for each model (and alignments):
>> PF11241.3  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3    0.0033        45      45      91 ..      39      92 ..      28     111 .. 0.62
   2 ?    6.0   1.3   0.00052       7.1      67      94 ..     113     143 ..     103     149 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0033
    PF11241.3 45 eamaaGderyLpardrgpvrryvRD.....yVDarrnls..efllpvalvvlvl 91
                 eam +G ++ L +rd  + ++++ +      V +r n +  + +++++++++ +
  MMETSP0890-20130614|40766_1 39 EAMGTGKKTMLHDRDLWNTKELAMEqknnrAVGTRKNTAlyDIMIMIMIALMTF 92
                 788999999999999888888876522222455655543103333333333333 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00052
    PF11241.3  67 vRD.yVDarrnlsef..llpvalvvlvlmlv 94 
                  +RD +VD+r n   f  ++++++v+l++ ++
  MMETSP0890-20130614|40766_1 113 TRDeVVDTRKNTTPFdmMMIFMMVYLFILIF 143
                  565489****998663377777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       807  (0.0590257); expected 273.4 (0.02)
Passed bias filter:                      484  (0.0354008); expected 273.4 (0.02)
Passed Vit filter:                        45  (0.0032914); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 565.39
//
Query:       MMETSP0890-20130614|40768_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.51    9.3  23.6       0.63    9.0   1.9    3.4  3  PF04582.7  Reovirus sigma C capsid protein
       0.84    7.1  75.5        9.4    3.6   7.1    3.1  2  PF01576.14 Myosin tail


Domain annotation for each model (and alignments):
>> PF04582.7  Reovirus sigma C capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.3    0.0021        14      38     153 ..      63     185 ..      45     197 .. 0.51
   2 ?    5.7   0.4   0.00093       6.3      60     128 ..     214     281 ..     192     290 .. 0.79
   3 ?    9.0   1.9   9.3e-05      0.63      34     127 ..     289     385 ..     284     391 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0021
    PF04582.7  38 taleaataslsesvssissklsdlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaa...lsslqtevda.nstdisnlks...dvsanglnitdleervksle 153
                  ++le  +a ++e ++++  +  + s++ + + +s + v  +l++  ++ a+l++ +++  s+l  l   vs+ ++a     + q+ev+a +st++ +l++   dv +   +   l  +vk++e
  MMETSP0890-20130614|40768_1  63 SELEKKNAFIQEELENLRIEFEQKSVAYNALNESSNAVAMTLEKEAQQQAELKQKLSNAESQLEILRAEVSELNEAkngTNEHQREVEAkLSTALCELEAkrqDVESLMNERKILAAKVKDVE 185
                  556666666666666666666666666555555555555555555555555555555555555555444444333311123344444442244444443311133333333333444444444 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00093
    PF04582.7  60 dlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstdi 128
                   ++a+ ++++ + +  +ael +++++ +a+++ ++s   +la+l +  + + + + +lq  v++   d 
  MMETSP0890-20130614|40768_1 214 AVEAN-KELVGTKERSEAELAKVRNDCTAVEQELKSKLEQLANLEKKHDVNGEHIKFLQARVNTAENDA 281
                  44444.567777888999**************************99999999*******9999877665 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 9.3e-05
    PF04582.7  34 yerltaleaataslsesvssisskls...dlsadlqdvtsslddvkaelkelstevaalqssvdslsseladlselvsahdaalsslqtevdanstd 127
                   e +++le++ + + ++++++++k s   +l+ +l+ v  +l+ ++++ ++l++e++ +++  d l +el    ++ ++ +  l +l++e da+ ++
  MMETSP0890-20130614|40768_1 289 AEVFANLETSRKKIADTLEHMTQKDStqvKLERELELVKVALNAAISSRDQLQSELSIINTESDRLGAELERERKIHHDGALQLENLRRERDALQAK 385
                  577899**********999998765522268999********************************************************9998765 PP

>> PF01576.14  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   8.9    0.0031        21     547     629 ..       4      87 ..       1      92 [. 0.81
   2 ?    3.6   7.1    0.0014       9.4     572     646 ..     277     351 ..     273     375 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0031
   PF01576.14 547 lKKKleadineLeialdaankanaeaqknvkklqqqvkelqtqveee.qraredareqlavaerraaaleaEleelrsaleqae 629
                  +K  +e++i+  e a    ++  ++  + + + qq++k+   + e+e   a+ +++++ ++ e+++a +++Ele+lr + eq +
  MMETSP0890-20130614|40768_1   4 VKAAMEEQIASHEAASTWMTQILEQERQIANQCQQELKDCLVSKEDEaEMAQRKILDEKSELEKKNAFIQEELENLRIEFEQKS 87 
                  677899999999988888877776666667788999***88776655166788999**********************999875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0014
   PF01576.14 572 aqknvkklqqqvkelqtqveeeqraredareqlavaerraaaleaEleelrsaleqaerarkaaEaeleeaserv 646
                  a+  +k++ +++ e+ +++e ++++  d++e++ + +  +  le Ele +++al++a ++r +  +el   + + 
  MMETSP0890-20130614|40768_1 277 AENDAKEARAELAEVFANLETSRKKIADTLEHMTQKDSTQVKLERELELVKVALNAAISSRDQLQSELSIINTES 351
                  567789999999999999999999999999999999999999999999999999999999999888886555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2247  (0.16435); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        82  (0.00599766); expected 13.7 (0.001)
Passed Fwd filter:                        41  (0.00299883); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.33u 0.40s 00:00:02.73 Elapsed: 00:00:01.19
# Mc/sec: 988.75
//
Query:       MMETSP0890-20130614|40774_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-30  104.9  16.9    1.9e-10   40.5   0.1    6.1  6  PF13415.1  Galactose oxidase, central domain
      1e-29  101.9  15.7    5.3e-08   32.3   0.0    5.5  5  PF13418.1  Galactose oxidase, central domain
    9.3e-27   91.9  11.6    3.3e-08   33.2   0.1    5.4  5  PF13964.1  Kelch motif
    2.5e-23   81.0  10.3    8.1e-05   22.4   0.0    5.7  5  PF07646.10 Kelch motif
    3.1e-23   81.1  13.1    5.6e-07   29.2   0.1    5.3  5  PF13854.1  Kelch motif
      3e-21   74.5  10.7    8.5e-06   25.0   0.2    5.6  5  PF01344.20 Kelch motif


Domain annotation for each model (and alignments):
>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   4.7e+02      30      46 ..     100     116 ..      83     116 .. 0.70
   2 !   40.5   0.1   8.2e-14   1.9e-10       1      47 [.     121     171 ..     121     171 .. 0.94
   3 !   27.8   0.0   7.9e-10   1.8e-06       3      48 ..     177     230 ..     174     231 .. 0.89
   4 !   23.8   0.3   1.4e-08   3.1e-05       2      47 ..     233     284 ..     232     285 .. 0.87
   5 !   16.7   0.2   2.4e-06    0.0055       2      42 ..     289     336 ..     288     340 .. 0.78
   6 ?    2.5   0.0     0.069   1.6e+02      19      31 ..     369     381 .]     360     381 .] 0.88

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.21
    PF13415.1  30 tweeigslPppRaghta 46 
                  ++++ g lPp R  h+a
  MMETSP0890-20130614|40774_1 100 EITPKGKLPPERLAHAA 116
                  3344499********96 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 8.2e-14
    PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldtntweei....gslPppRaghtat 47 
                  +++ly++GG  ++g+  +nd +++  dtntwee+    +++P+ R +h+++
  MMETSP0890-20130614|40774_1 121 NEYLYIHGGMYGTGNISYNDIWRYHQDTNTWEELqtsgDDIPSRRLHHSMV 171
                  579********9********************99999999********986 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 7.9e-10
    PF13415.1   3 elyvfGGlgd....dgqtrlndvyvldldtntweei....gslPppRaghtata 48 
                   l++fGG++     ++ + +nd+y +dl++  w++i     ++P+ R  h a++
  MMETSP0890-20130614|40774_1 177 QLLIFGGFNVfntqSHHDSYNDLYSFDLSKLAWKKInantNNWPTKRGAHDAVY 230
                  599*******9987779999**************99988899*****9998876 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 1.4e-08
    PF13415.1   2 delyvfGGlgd.dgqtrlndvyvldldtntweei.....gslPppRaghtat 47 
                  + +y+fGG+   +++  l++++ +d+ +n w+ +     ++ P +R g+t++
  MMETSP0890-20130614|40774_1 233 GLMYMFGGYESiGSTGHLAEFWSYDPRSNLWTDLtqtddDTYPVGRIGFTMA 284
                  679*****9997779999***********999665668777899*****986 PP

  == domain 5    score: 16.7 bits;  conditional E-value: 2.4e-06
    PF13415.1   2 delyvfGGlgd....dgqtrlndvyvldldtntweei...gslPppRa 42 
                  +++y+fGG       +    ++d + + + tn+w+++   g++P+ R+
  MMETSP0890-20130614|40774_1 289 GKIYLFGGACSdpsvSDSGQCSDSWKYEPFTNQWTRLyptGNIPDSRR 336
                  78******7743354335555**************88888****9776 PP

  == domain 6    score: 2.5 bits;  conditional E-value: 0.069
    PF13415.1  19 ndvyvldldtntw 31 
                   d++v+d+++n w
  MMETSP0890-20130614|40774_1 369 DDLHVYDPTSNMW 381
                  79********988 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.3e-11   5.3e-08       2      45 ..     111     155 ..     110     163 .. 0.87
   2 !   23.9   0.0     1e-08   2.3e-05       2      45 ..     165     214 ..     164     221 .. 0.90
   3 !   23.4   0.3   1.5e-08   3.4e-05       3      44 ..     224     266 ..     222     273 .. 0.89
   4 !   23.8   0.5   1.1e-08   2.5e-05       2      46 ..     278     330 ..     277     333 .. 0.88
   5 !    5.9   0.0    0.0041       9.4      26      41 ..     366     381 .]     352     381 .] 0.89

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.3e-11
    PF13418.1   2 RaghsavavpdgrlylfGGenedg.gplnDlyvfDlstntWtrlp 45 
                  R  h+a  v + +ly++GG+++ g  ++nD++++  +tntW++l 
  MMETSP0890-20130614|40774_1 111 RLAHAAETVSNEYLYIHGGMYGTGnISYNDIWRYHQDTNTWEELQ 155
                  6679999999999****************************9993 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 1e-08
    PF13418.1   2 RaghsavavpdgrlylfGGenedg......gplnDlyvfDlstntWtrl.p 45 
                  R  hs+v + +  l++fGG n          ++nDly fDls   W+++ +
  MMETSP0890-20130614|40774_1 165 RLHHSMVNINNEQLLIFGGFNV-FntqshhDSYNDLYSFDLSKLAWKKInA 214
                  889******9999********9.669********************99853 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1.5e-08
    PF13418.1   3 aghsavavpdgrlylfGGenedg..gplnDlyvfDlstntWtrl 44 
                  + h av+v +g +y+fGG+ + g  g l +++ +D+ +n Wt l
  MMETSP0890-20130614|40774_1 224 GAHDAVYV-NGLMYMFGGYESIGstGHLAEFWSYDPRSNLWTDL 266
                  55668999.8*************9999**************987 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 1.1e-08
    PF13418.1   2 RaghsavavpdgrlylfGGenedg.....gplnDlyvfDlstntWtrl...ps 46 
                  R g+++   +dg++ylfGG+ +d      g ++D + + + tn+Wtrl   ++
  MMETSP0890-20130614|40774_1 278 RIGFTMADGGDGKIYLFGGACSDPsvsdsGQCSDSWKYEPFTNQWTRLyptGN 330
                  8899999899************758**********************985555 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0041
    PF13418.1  26 gplnDlyvfDlstntW 41 
                  + ++Dl+v+D+++n W
  MMETSP0890-20130614|40774_1 366 TMFDDLHVYDPTSNMW 381
                  5689*********977 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.4e-11   3.3e-08       3      47 ..     112     162 ..     110     165 .. 0.82
   2 !   20.5   0.0   1.5e-07   0.00035       2      43 ..     165     212 ..     164     219 .. 0.93
   3 !   21.2   0.1   9.2e-08   0.00021       4      44 ..     225     267 ..     222     278 .. 0.89
   4 !   16.8   0.2   2.2e-06     0.005      11      43 ..     288     325 ..     280     335 .. 0.82
   5 ?    5.0   0.0     0.012        27      26      40 ..     367     381 .]     342     381 .] 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.4e-11
    PF13964.1   3 aghsa.vsvggkiyifGGytns.gkylndvlvydpetksWeqlp....plp 47 
                   +h+a ++ ++++yi+GG +++ + ++nd+++y+ +t++We+l+    ++p
  MMETSP0890-20130614|40774_1 112 LAHAAeTVSNEYLYIHGGMYGTgNISYNDIWRYHQDTNTWEELQtsgdDIP 162
                  56777466788**********9********************985555566 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.5e-07
    PF13964.1   2 raghsavsvgg.kiyifGGytns.....gkylndvlvydpetksWeql 43 
                  r +hs+v +++ ++ ifGG++       + ++nd++ +d++   W+++
  MMETSP0890-20130614|40774_1 165 RLHHSMVNINNeQLLIFGGFNVFntqshHDSYNDLYSFDLSKLAWKKI 212
                  789***9999779*********9**********************998 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 9.2e-08
    PF13964.1   4 ghsavsvggkiyifGGytns..gkylndvlvydpetksWeqlp 44 
                  +h av+v+g  y+fGGy+      +l +++ ydp+++ W+ l+
  MMETSP0890-20130614|40774_1 225 AHDAVYVNGLMYMFGGYESIgsTGHLAEFWSYDPRSNLWTDLT 267
                  6889*************9878******************9876 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 2.2e-06
    PF13964.1  11 ggkiyifGGytns.....gkylndvlvydpetksWeql 43 
                  +gkiy+fGG++ +     +  ++d ++y p t+ W++l
  MMETSP0890-20130614|40774_1 288 DGKIYLFGGACSDpsvsdSGQCSDSWKYEPFTNQWTRL 325
                  79********9999****6666666***********96 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.012
    PF13964.1  26 ylndvlvydpetksW 40 
                   ++d++vydp ++ W
  MMETSP0890-20130614|40774_1 367 MFDDLHVYDPTSNMW 381
                  5789*********99 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.6e-08   8.1e-05       2      47 ..     112     156 ..     111     158 .. 0.91
   2 !   19.5   0.0   2.8e-07   0.00064       1      46 [.     164     213 ..     164     215 .. 0.94
   3 !   18.5   0.1   5.8e-07    0.0013       2      48 ..     223     269 ..     222     270 .. 0.91
   4 !   18.0   0.4   8.7e-07     0.002       2      45 ..     278     325 ..     277     329 .. 0.80
   5 ?    4.8   0.0     0.012        28      29      42 ..     368     381 .]     343     381 .] 0.91

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.6e-08
   PF07646.10   2 ryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeeltp 47 
                  +++ + +v++  +y+ GG+ ++ g+ s +d++ +  ++n+Weel+ 
  MMETSP0890-20130614|40774_1 112 LAHAAETVSNEYLYIHGGM-YGTGNISYNDIWRYHQDTNTWEELQT 156
                  567778899**********.***********************985 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.8e-07
   PF07646.10   1 pryghsavvp.ggkiyvvGGa...htdngllsssdlnvldpeknvWeelt 46 
                  +r +hs+v + + +++++GG+   +t    +s +dl+ +d++k  W++++
  MMETSP0890-20130614|40774_1 164 RRLHHSMVNInNEQLLIFGGFnvfNTQSHHDSYNDLYSFDLSKLAWKKIN 213
                  6889****777************************************998 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 5.8e-07
   PF07646.10   2 ryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWeeltpl 48 
                  r+ h av+++g +y++GG+++ +    +  ++ +dp++n W++lt++
  MMETSP0890-20130614|40774_1 223 RGAHDAVYVNGLMYMFGGYESIGSTGHLAEFWSYDPRSNLWTDLTQT 269
                  778889*************99999999999**************986 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 8.7e-07
   PF07646.10   2 ryghsav.vpggkiyvvGGa...htdngllsssdlnvldpeknvWeel 45 
                  r+g +++  ++gkiy++GGa    +  ++  +sd + + p +n+W++l
  MMETSP0890-20130614|40774_1 278 RIGFTMAdGGDGKIYLFGGAcsdPSVSDSGQCSDSWKYEPFTNQWTRL 325
                  5566666477**********998666666778999***********97 PP

  == domain 5    score: 4.8 bits;  conditional E-value: 0.012
   PF07646.10  29 ssdlnvldpeknvW 42 
                  ++dl+v+dp +n W
  MMETSP0890-20130614|40774_1 368 FDDLHVYDPTSNMW 381
                  78************ PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   2.4e-10   5.6e-07       1      37 [.     107     144 ..     107     151 .. 0.89
   2 !   19.7   0.0   2.4e-07   0.00055       1      39 [.     161     204 ..     161     206 .. 0.82
   3 !   19.4   0.2   2.9e-07   0.00066       1      42 []     219     261 ..     219     261 .. 0.94
   4 !   10.9   0.2   0.00013      0.31       2      29 ..     275     307 ..     274     320 .. 0.69
   5 !    7.8   0.1    0.0013       2.9      15      42 .]     346     379 ..     331     379 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.4e-10
    PF13854.1   1 lPppRarhcavvvs.gniylyGGksgnddsvsddvyvL 37 
                  lPp R  h+a +vs +++y++GG+ g+++++++d++++
  MMETSP0890-20130614|40774_1 107 LPPERLAHAAETVSnEYLYIHGGMYGTGNISYNDIWRY 144
                  7*********9997479********************9 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.4e-07
    PF13854.1   1 lPppRarhcav.vvsgniylyGGks...g.nddsvsddvyvLsl 39 
                  +P+ R +h++v   +++++++GG++   + +  ++++d+y ++l
  MMETSP0890-20130614|40774_1 161 IPSRRLHHSMVnINNEQLLIFGGFNvfnTqSHHDSYNDLYSFDL 204
                  7**********566799********76625568889**996665 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 2.9e-07
    PF13854.1   1 lPppRarhcavvvsgniylyGGksg.nddsvsddvyvLslpsf 42 
                  +P+ R  h av+v+g +y++GG+ + ++++ + +++ ++++s+
  MMETSP0890-20130614|40774_1 219 WPTKRGAHDAVYVNGLMYMFGGYESiGSTGHLAEFWSYDPRSN 261
                  69999*********************9*********9999986 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00013
    PF13854.1   2 PppRarhcav.vvsgniylyGGksg....ndds 29 
                  P++R ++ ++ + +g+iyl+GG  +    +d++
  MMETSP0890-20130614|40774_1 275 PVGRIGFTMAdGGDGKIYLFGGACSdpsvSDSG 307
                  888889888735568*******99644444444 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.0013
    PF13854.1  15 gniylyGGks.....g.nddsvsddvyvLslpsf 42 
                  g ++ yGG++     + ++ + +dd++v+++ s+
  MMETSP0890-20130614|40774_1 346 GLLFQYGGVNiqvidSaPSITMFDDLHVYDPTSN 379
                  56677999999877756778889*******9986 PP

>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   3.7e-09   8.5e-06       8      44 ..     118     155 ..     111     157 .. 0.91
   2 !    9.9   0.0    0.0002      0.46       2      43 ..     165     212 ..     164     214 .. 0.86
   3 !   25.0   0.0   3.8e-09   8.7e-06       5      44 ..     226     267 ..     222     269 .. 0.92
   4 !   13.7   0.3   1.3e-05     0.029      11      43 ..     288     325 ..     284     325 .. 0.90
   5 ?    3.2   0.0     0.025        56       5      40 ..     339     381 .]     335     381 .] 0.72

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.7e-09
                  EEETTEEEEE---BS.TTS-TTEEEEEETTTTEEEEEC CS
   PF01344.20   8 vvldgkiYviGGrdg.dtnalnsVerYDpvtntWeklp 44 
                  +v + ++Y+ GG  g  + + n+++rY+  tntWe+l 
  MMETSP0890-20130614|40774_1 118 TVSNEYLYIHGGMYGtGNISYNDIWRYHQDTNTWEELQ 155
                  699************999999**************986 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0002
                  SSCEEEEEETT.EEEEE---BS.....TTS-TTEEEEEETTTTEEEEE CS
   PF01344.20   2 rssagvvvldg.kiYviGGrdg.....dtnalnsVerYDpvtntWekl 43 
                  r ++++v +++ ++ ++GG++       + + n+ + +D+ +  W+k+
  MMETSP0890-20130614|40774_1 165 RLHHSMVNINNeQLLIFGGFNVfntqsHHDSYNDLYSFDLSKLAWKKI 212
                  6677777776636****************************9999986 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 3.8e-09
                  EEEEEETTEEEEE---BS..TTS-TTEEEEEETTTTEEEEEC CS
   PF01344.20   5 agvvvldgkiYviGGrdg..dtnalnsVerYDpvtntWeklp 44 
                  + +v+++g +Y +GG+ +  +t  l   + YDp++n W+ l+
  MMETSP0890-20130614|40774_1 226 HDAVYVNGLMYMFGGYESigSTGHLAEFWSYDPRSNLWTDLT 267
                  5689**********************************9885 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 1.3e-05
                  TTEEEEE---BS.....TTS-TTEEEEEETTTTEEEEE CS
   PF01344.20  11 dgkiYviGGrdg.....dtnalnsVerYDpvtntWekl 43 
                  dgkiY +GG ++     d+   ++ + Y p tn+W++l
  MMETSP0890-20130614|40774_1 288 DGKIYLFGGACSdpsvsDSGQCSDSWKYEPFTNQWTRL 325
                  9***********9999988888888999999****986 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.025
                  EEEEEETTEEEEE---BS.......TTS-TTEEEEEETTTTEE CS
   PF01344.20   5 agvvvldgkiYviGGrdg.......dtnalnsVerYDpvtntW 40 
                  +g  ++ g ++  GG +        + +  ++  +YDp++n W
  MMETSP0890-20130614|40774_1 339 HGDIAIYGLLFQYGGVNIqvidsapSITMFDDLHVYDPTSNMW 381
                  555566666666677777777777778888999******9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       425  (0.0310854); expected 273.4 (0.02)
Passed bias filter:                      353  (0.0258192); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.40s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 1170.53
//
Query:       MMETSP0890-20130614|40792_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-44  150.8   0.1    1.8e-44  150.6   0.0    1.0  1  PF12046.3 Protein of unknown function (DUF3529)


Domain annotation for each model (and alignments):
>> PF12046.3  Protein of unknown function (DUF3529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   1.4e-48   1.8e-44       8     173 .]       2     164 ..       1     164 [. 0.96

  Alignments for each domain:
  == domain 1    score: 150.6 bits;  conditional E-value: 1.4e-48
    PF12046.3   8 tLlLtlLlaiGLvfflrasvkdrttrvele.ssrepeelleelkeylerrgyrveegdaeeevitFeGqvaaskflAvfltllaavGlaclgLVlsilvpelgawplllvllsPlaGlyYwqrakRkeqvelklveadedegseltveahrdeleeLakeLqLkskg 173
                  tL L +++ +GL++++++svk +  +++++  + + +++++e+  y++ ++y+vee   ++e+itF+G  ++sk +A+fl++++++Gla+l+LVl++ +p++g +++l++l+sP aG+yYwq+a+  +++++kl+e d+ + + l v++ ++++e++a+ ++L+++g
  MMETSP0890-20130614|40792_1   2 TLGLYIISFPGLYSLIKRSVKVQLVQKTFIfEEGDMKSIATEVMGYMKANNYDVEE---AGETITFKGLTESSKSQAFFLSFCTFIGLASLALVLQVQFPAIGSYWFLMTLISPYAGIYYWQNAQNDNEFKVKLEERDD-QAKALLVRGGKEDVERMARVMDLREEG 164
                  9****************************94566899*******************...99*************************************************************************99986.678899*****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       520  (0.0380339); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        38  (0.0027794); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.43s 00:00:00.89 Elapsed: 00:00:01.21
# Mc/sec: 350.54
//
Query:       MMETSP0890-20130614|40791_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1112  (0.0813341); expected 273.4 (0.02)
Passed bias filter:                      400  (0.0292569); expected 273.4 (0.02)
Passed Vit filter:                        75  (0.00548566); expected 13.7 (0.001)
Passed Fwd filter:                        35  (0.00255998); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.63u 0.37s 00:00:02.00 Elapsed: 00:00:01.29
# Mc/sec: 1162.88
//
Query:       MMETSP0890-20130614|40793_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.0   2.7    7.1e-14   51.4   2.0    2.1  1  PF04910.9  Transcriptional repressor TCF25
     0.0018   18.4   3.6       0.73   10.3   0.3    3.2  3  PF13174.1  Tetratricopeptide repeat
     0.0057   16.3   3.4       0.52   10.2   0.1    2.9  2  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.032   14.2   0.0    1.8  2  PF03670.8  Uncharacterised protein family (UPF0184)
      0.046   12.8   0.0        0.2   10.6   0.0    1.9  2  PF13549.1  ATP-grasp domain
       0.13   12.8   5.7        2.6    8.8   0.1    4.1  5  PF13428.1  Tetratricopeptide repeat
       0.14   12.7   3.2        8.8    7.0   0.1    3.1  3  PF13432.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF04910.9  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   2.0   3.6e-17   7.1e-14       7     293 ..     139     394 ..     135     428 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.6e-17
    PF04910.9   7 sklyreaenlFyalvdthDpealvnllkkyPYHvdtLlqlsevyreqgdfevAndlieraLfilervfhpsFsplllnassgkirlnyeryeNralflalyrhiqslerrgctrTAlevaKlLlsldpeeDplgillliDylalkskefefLidfsespaarilksllsklPnfafSlaLalyllekenkndneqkkgspslsesarvlLlrAllrfPkvlqkLlekl.....kviydssfk.......alppfsslslsseseeesvqklielYvernkilWkseevltwlhealesa 293
                  s+++++a++++    +   p+++ +l+ + P+H +tL+  + ++  +g f  A  l+ ra      ++  +F    ++++     +       +++f a++     + +rg+ rTA +  +  ++l+p++Dp+ + l++ +     +e++ + ++se+          + +P+  +  aL ly  +k+                +a ++L++ l  fP++l+ Ll+++     +   +s+f+         ++++ +++ s    +s+ + +++   r + +W+ ++++++l+ a+e +
  MMETSP0890-20130614|40793_1 139 SEDWQRANQQLA---QAGAPNEIGTLVAQRPFHAPTLIAAATMCCSMGLFDLAIPLCVRA------CASYTF----YRRD----AVVADCEATKSFFDAVFLLARLAAKRGAKRTAANLFRACFKLNPDHDPCLVSLRLASDLYIINEYKAIAQLSEEEF-------GQFIPDTRLCQALYLYNTQKD----------------QAIEYLSQTLAAFPQLLSCLLDACeiradN--INSRFReilwrdhFRKNTWLTHQASAYALTSLPRALDVACLRQHAIWRHPDHIEFLRLAAE-N 394
                  555566666555...55689*********************************9999887......889999....3444....4677777889*****************************************999965555558*********9443.......4679************88888................8*********************88445331..22334366643443333334444444445566778888889****************9976.2 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0024       4.7       1      33 []     219     251 ..     219     251 .. 0.94
   2 !   10.3   0.3   0.00038      0.73       8      32 ..     292     317 ..     289     317 .. 0.82
   3 ?   -2.6   0.0       4.6     9e+03      21      31 ..     422     432 ..     417     433 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0024
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   1 dAlyklalsyyklgdtdeAlealerlikeyPdS 33 
                  dA ++la++  k g ++ A  +++ + k  Pd+
  MMETSP0890-20130614|40793_1 219 DAVFLLARLAAKRGAKRTAANLFRACFKLNPDH 251
                  6889********88*****************96 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00038
                  HHHHH.HHHHHHHHHHHHHHHHH-TT CS
    PF13174.1   8 lsyyk.lgdtdeAlealerlikeyPd 32 
                  +++y  ++++d+A+e+l + ++ +P+
  MMETSP0890-20130614|40793_1 292 QALYLyNTQKDQAIEYLSQTLAAFPQ 317
                  56666577****************95 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 4.6
                  HHHHHHHHH-T CS
    PF13174.1  21 ealerlikeyP 31 
                  +++ ++ +++P
  MMETSP0890-20130614|40793_1 422 DVFAQFSDDFP 432
                  58999*99999 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00026      0.52       3      34 .]     220     251 ..     218     251 .. 0.93
   2 !    6.0   0.2    0.0059        11      10      33 ..     294     317 ..     293     318 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  a ++l+++++k+g    A+++f+ + +l+P++
  MMETSP0890-20130614|40793_1 220 AVFLLARLAAKRGAKRTAANLFRACFKLNPDH 251
                  6699**************************97 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0059
                  HHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12  10 ayyklgdyeeAleafekAleldPn 33 
                  +y+++ + ++A+e++ + l+ +P+
  MMETSP0890-20130614|40793_1 294 LYLYNTQKDQAIEYLSQTLAAFPQ 317
                  69999**************99996 PP

>> PF03670.8  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   1.7         7   1.4e+04      16      27 ..       6      17 ..       3      20 .. 0.43
   2 ?   14.2   0.0   1.7e-05     0.032      38      60 ..     319     341 ..     298     350 .. 0.88

  Alignments for each domain:
  == domain 1    score: -6.5 bits;  conditional E-value: 7
    PF03670.8 16 aeteedefgeeE 27
                  e+e+de + +E
  MMETSP0890-20130614|40793_1  6 SESEDDEEERKE 17
                 344444444433 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.7e-05
    PF03670.8  38 insaLDalEernDdlnskLrELl 60 
                  +++ LDa E r D++ns+ rE+l
  MMETSP0890-20130614|40793_1 319 LSCLLDACEIRADNINSRFREIL 341
                  79*******************98 PP

>> PF13549.1  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.47   9.2e+02     120     136 ..     114     130 ..      98     149 .. 0.89
   2 ?   10.6   0.0    0.0001       0.2     145     204 ..     272     334 ..     263     338 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.47
    PF13549.1 120 DpqFGpvvlfGlGGtav 136
                  +++FGpv +f  GG+ +
  MMETSP0890-20130614|40793_1 114 TNEFGPVPSFHKGGIRW 130
                  689**********9976 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
    PF13549.1 145 alpplnstlareliertkaykllkgvrgrkpvdlealeellvrlsqlvi...dlpeIeeldin 204
                  a+++l+++++ + i  t+  ++l  ++ +k   +e l+++l  + ql+    d +eI+  +in
  MMETSP0890-20130614|40793_1 272 AIAQLSEEEFGQFIPDTRLCQALYLYNTQKDQAIEYLSQTLAAFPQLLScllDACEIRADNIN 334
                  7899*************************99****************9988899999988887 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.8   1.1e+04      33      43 ..     141     151 ..     132     155 .. 0.53
   2 ?   -1.2   0.0       2.1   4.2e+03       6      29 ..     174     197 ..     169     203 .. 0.78
   3 ?    8.8   0.1    0.0013       2.6       2      35 ..     219     252 ..     218     262 .. 0.88
   4 ?    3.6   0.0     0.059   1.2e+02      16      33 ..     300     317 ..     288     323 .. 0.84
   5 ?   -1.7   0.0         3   5.9e+03      27      42 ..     377     392 ..     370     393 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 5.8
    PF13428.1  33 ddaealllLar 43 
                  d  +a  +La+
  MMETSP0890-20130614|40793_1 141 DWQRANQQLAQ 151
                  33344444444 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2.1
    PF13428.1   6 alarallalGdpdeAiallrrala 29 
                  a a  +  +G +d Ai l+ ra+a
  MMETSP0890-20130614|40793_1 174 AAATMCCSMGLFDLAIPLCVRACA 197
                  5666778999******99877765 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0013
    PF13428.1   2 eallalarallalGdpdeAiallrralalaPdda 35 
                  +a  +lar+ + +G    A++l+r+  +l+Pd++
  MMETSP0890-20130614|40793_1 219 DAVFLLARLAAKRGAKRTAANLFRACFKLNPDHD 252
                  67889**************************986 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.059
    PF13428.1  16 dpdeAiallrralalaPd 33 
                  + d+Ai++l + la++P+
  MMETSP0890-20130614|40793_1 300 QKDQAIEYLSQTLAAFPQ 317
                  679*************97 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 3
    PF13428.1  27 alalaPddaealllLa 42 
                  a+ ++Pd+ e+l+l a
  MMETSP0890-20130614|40793_1 377 AIWRHPDHIEFLRLAA 392
                  56689**999999877 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.2   4.2e+03      22      51 ..     160     189 ..     139     198 .. 0.71
   2 ?    7.0   0.1    0.0045       8.8      31      63 ..     218     250 ..     204     252 .. 0.78
   3 ?    4.8   0.0     0.022        43       7      30 ..     295     318 ..     293     327 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.2
    PF13432.1  22 aalalaPeaaeallllaeallrlgrldeAa 51 
                  +++a+ P++a  l + a ++  +g +d A+
  MMETSP0890-20130614|40793_1 160 TLVAQRPFHAPTLIAAATMCCSMGLFDLAI 189
                  456666888888888887777777777776 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0045
    PF13432.1  31 aeallllaeallrlgrldeAaallraalalaPd 63 
                   +a +lla++++++g    Aa l+ra  +l+Pd
  MMETSP0890-20130614|40793_1 218 FDAVFLLARLAAKRGAKRTAANLFRACFKLNPD 250
                  578888999999998888888888876566655 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.022
    PF13432.1   7 llraGdydeAlaaleaalalaPea 30 
                  +l++ + d+A+++l++ la++P+ 
  MMETSP0890-20130614|40793_1 295 YLYNTQKDQAIEYLSQTLAAFPQL 318
                  77778889*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1442  (0.105471); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        79  (0.00577823); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:01.10
# Mc/sec: 1115.40
//
Query:       MMETSP0890-20130614|40796_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      137  (0.0100205); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.41s 00:00:00.69 Elapsed: 00:00:00.74
# Mc/sec: 132.77
//
Query:       MMETSP0890-20130614|40794_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-12   46.9   0.0    4.7e-12   45.8   0.0    1.6  1  PF10442.4 FIST C domain
    4.2e-07   29.1   0.0    7.4e-06   25.1   0.0    2.4  2  PF08495.5 FIST N domain


Domain annotation for each model (and alignments):
>> PF10442.4  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   6.9e-16   4.7e-12      54     135 ..     366     464 ..     302     465 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 6.9e-16
    PF10442.4  54 edveeGtelqlmlrdaealiadarraleea..................agrepagallfdCagR.kllfgeaeddeveivrealgddvplaGfftyGEigp 135
                  ++v +G+ +++++ +aea++ ++r a++++                  ++ +++g+++f+C gR + ++g +e ++ +++r+a++ d+pl+G f++ Eigp
  MMETSP0890-20130614|40794_1 366 GHVATGDLVAWHTLSAEASRTELRLAARACrehlmlgsaqsplrqgldESLSVLGGIVFSCCGRgRNFHG-RELADSSAIRSAIP-DIPLIGIFANAEIGP 464
                  5799********************999999*****************98889************999999.9************9.68***********98 PP

>> PF08495.5  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.1e-09   7.4e-06       1     190 [.      50     265 ..      50     267 .. 0.85
   2 ?    1.2   0.0     0.023   1.6e+02      21      43 ..     442     464 ..     430     480 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.1e-09
    PF08495.5   1 rpdlvlvFvssaydeeae.llealrealp..gvpvvGcstageitt.......edegepalsvtllalpsaelrvfsgliedlslddlesaaeageelvealrsdgdpfalllvdglsgneeellegld..daagpsvpivGGlAgdglrfertvvfangqvyed.................gavvvllsgslkfgtavaqgfepige.pfvVTkaegnv 190
                  +p lvl+Fvs++   ++  + +alr ++    + + G+ + g i++       e e+e+++ v ++   +    ++s +   ++   + +  e + +++++ +++  +++l+l  +  ++ e +  + +  + a   + i GG  g g +  +t+++  +++ ++                 ga+v++l+g+l+  +a + g + +g+  +++ ++e++ 
  MMETSP0890-20130614|40794_1  50 PPHLVLIFVSGKWSNRLIqIRKALRFRFNsnKTVIAGGASRGLICAranaqpfELESEDSGIVLAVIRLAQTEDCVSMAY--VPCRIPHALDEPVINALSKTMNP--RLILVLGNEYRASVEAVTLANEyaNTAIQYCAISGGILGCGKDPDSTCQIILDGPLQNndafprvlpsdsnsfipGAIVLALGGQLEAVSAGSRGAKLVGPfVYKISQVEQRQ 265
                  589*************************98778888****************9777777666655554444447777676..6777778999*********9995..***************777666555999999*********************8888888899999**********************999999999999976356777777665 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.023
    PF08495.5  21 ealrealpgvpvvGcstageitt 43 
                  +a+r+a+p++p++G  +  ei++
  MMETSP0890-20130614|40794_1 442 SAIRSAIPDIPLIGIFANAEIGP 464
                  689*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       295  (0.0215769); expected 273.4 (0.02)
Passed bias filter:                      287  (0.0209918); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.38s 00:00:01.18 Elapsed: 00:00:00.85
# Mc/sec: 1451.91
//
Query:       MMETSP0890-20130614|40813_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-122  407.7   0.1   1.5e-122  407.4   0.1    1.1  1  PF08423.6  Rad51
    4.2e-12   45.6   0.0    5.8e-12   45.2   0.0    1.1  1  PF00154.16 recA bacterial DNA recombination protein
    1.7e-11   43.7   0.0    2.5e-11   43.2   0.0    1.2  1  PF13481.1  AAA domain
    1.2e-08   34.2   0.0    2.7e-08   33.0   0.0    1.6  1  PF06745.8  KaiC
     0.0022   17.9   0.1     0.0044   17.0   0.0    1.4  1  PF13401.1  AAA domain
  ------ inclusion threshold ------
      0.067   11.9   0.0        2.7    6.6   0.0    2.4  2  PF03796.10 DnaB-like helicase C terminal domain


Domain annotation for each model (and alignments):
>> PF08423.6  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.4   0.1  6.4e-126  1.5e-122       3     260 ..      93     352 ..      91     353 .. 0.98

  Alignments for each domain:
  == domain 1    score: 407.4 bits;  conditional E-value: 6.4e-126
    PF08423.6   3 klvalgfttaaellekrkevikittGskeldkllgGGietgsitevfGefrtGktqlchtlavtaqlplekgGgegkvlyidtegtfrperlvaiaerfgldseevldnvayaraynsehqlellaeaaakmaeerfallivdsitalyrtdfsGrGelaerqqklakflrklqkladefnvavvitnqvvadvdgaalfa..adekkPiGGhilahasttrlllrkgkGeervckiydsPslpeseavfaiseeGieda 260
                  +  + +f taa+ l+ r+++++ittGs++ld+ll+GGietgs+te++GefrtGktqlchtl+vt+ql+ e+gGgegk++yidtegtfrp+rl++iaerfg+d++evl+nv++arayn+ehq+ell++a+  m+e+rf ll+vds+talyrtd+ GrG+l++rq +la flr+l+++a ef++avv+tnqvva++dg++ f    ++ kPiGG+i+ahas+trl++rk+k  +r+c+++dsP lpesea f++s+ Gi da
  MMETSP0890-20130614|40813_1  93 QYCPCTFSTAAQELQARQNMVQITTGSTALDNLLNGGIETGSLTELYGEFRTGKTQLCHTLCVTSQLSSEQGGGEGKAMYIDTEGTFRPDRLQEIAERFGVDKDEVLENVVCARAYNTEHQTELLKSACGLMSEDRFVLLVVDSATALYRTDYIGRGQLSDRQVHLALFLRQLTRMAMEFGIAVVLTNQVVANPDGNSAFGskENTLKPIGGNIIAHASHTRLSFRKAKNANRICRVIDSPVLPESEAPFSVSSAGIDDA 352
                  667899**************************************************************************************************************************************************************************************************7435788***************************************************97 PP

>> PF00154.16  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.5e-15   5.8e-12      10     227 ..      90     325 ..      83     334 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.5e-15
                  HHHH------------.-.-----B-----HHHHHH------B---EEEEE-------HHHHHHHHHHHH..H-.-...--EEEEESS----H....HHHHH----GGG-E....EE------HHHHHHHH...HHT----SEEEEE-TTT---STT-.-----------HHHHHHHHHHHHHHHHTT---EEEEE-------.-.---------...----HHHHH-SEEEEEEEE----- CS
   PF00154.16  10 iekqfGkgsimrlgdk.eekeevevistgslaldialGiGGlPkGriieiyGpessGkttlalhaiaeaq..kk.g...gvaafidaehaldp....kyakklGvdidell....vsqPdtGeqaleiada...lvrsgavdlivvdsvaalvPkaei.eGemgdshvglqarlmsqalrkltgsisksntlvifinqireki.G.vmfgnPett...tGgralkfyasvrldirrieaike 227
                  + +q+   +     ++ ++++++  i+tgs+ald+ l  GG+  G ++e+yG   +Gkt l+       q   + g   g a +id+e ++ p    + a+++Gvd de+l    +++  + e+  e++++   l+      l+vvds +al   + i  G+++d +v l        lr+lt +  +  ++v++ nq+     G   fg+ e t    Gg+ +   +  rl  r++++ ++
  MMETSP0890-20130614|40813_1  90 VARQYCPCTFSTAAQElQARQNMVQITTGSTALDNLLN-GGIETGSLTELYGEFRTGKTQLCHTLCVTSQlsSEqGggeGKAMYIDTEGTFRPdrlqEIAERFGVDKDEVLenvvCARAYNTEHQTELLKSacgLMSEDRFVLLVVDSATALYRTDYIgRGQLSDRQVHLA-----LFLRQLTRMAMEFGIAVVLTNQVVANPdGnSAFGSKENTlkpIGGNIIAHASHTRLSFRKAKNANR 325
                  55555555554444331456788899********9997.********************986544433331122122236899********99444457999****776542222788888898888776533378888899***********999995599***999874.....4689******************9876424267*****995545*****************988765 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.1e-14   2.5e-11      12     189 ..     112     282 ..     102     287 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.1e-14
    PF13481.1  12 aedldtppppldwlvkgllprgsltllaGapgtGKStlalqlaaava....tGepflgpvvpepgrVlylsaEdseaelrrrlsailaalddpenlllvslagvgslrltaddrrdalltadlerllaaieelegpdlvviDtlsrlvgg.....densnsdv..gaviaalerlakrtgaavllvhHt 189
                  + +++t+ + ld l+ g +  gslt l+G+  tGK+ l+  l++       +G+         +g+ +y+++E++     +rl++i+++ + ++++ l ++     ++ +a+ ++++  t+ l+    ++ e  +  l+v+D++++l++      ++ s+++v  + ++++l r+a + g+av+l+ ++
  MMETSP0890-20130614|40813_1 112 MVQITTGSTALDNLLNGGIETGSLTELYGEFRTGKTQLCHTLCVTSQlsseQGG--------GEGKAMYIDTEGTF--RPDRLQEIAERFGVDKDEVLENV-----VCARAYNTEHQ--TELLKSACGLMSE-DRFVLLVVDSATALYRTdyigrGQLSDRQVhlALFLRQLTRMAMEFGIAVVLTNQV 282
                  5568899999**********************************7775544443........79***********8..68**********99999988863.....45555555554..6788889999988.78*************99888888888999889********************9776 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.2e-11   2.7e-08       2     195 ..     116     330 ..     115     333 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.2e-11
    PF06745.8   2 ktgIeglDellkgGipegrvvlitGepGtGKtifalqFlikgaeeyge.....pgvfvtveesa..edlrenakslgwdlekleeegklaiidasesaeeeaeedleelieklaeaikeikakrvviDsitgl..........yeekeavaReilrqlvrvlkklgvTailvsekss.............seeaaggygveefivdgvivLdlkeieeelvRtl 195
                   tg   lD+ll+gGi  g+++ ++Ge  tGKt ++ +  +++  + ++     + +++ +e +   + l+e a+++g+d +++ e+  ++   a++++++       el+++    ++e +   +v+Ds t+l           ++++  +   lrql+r+  + g+  +l++++               + + +gg+ +++ ++   + ++++++++++ R++
  MMETSP0890-20130614|40813_1 116 TTGSTALDNLLNGGIETGSLTELYGEFRTGKTQLCHTLCVTSQLSSEQgggegKAMYIDTEGTFrpDRLQEIAERFGVDKDEVLEN--VVCARAYNTEHQ------TELLKSACGLMSEDRFVLLVVDSATALyrtdyigrgqLSDRQVHLALFLRQLTRMAMEFGIAVVLTNQVVAnpdgnsafgskenTLKPIGGNIIAH-ASHTRLSFRKAKNANRICRVI 330
                  699999********************************99987664321222356******975559*******************..666666655444......566666677777777778888888888544422222222233334556777888879999999999998887777777776555555666777777.777777777777777777766 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.9e-06    0.0044       4     121 ..     133     278 ..     130     281 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.9e-06
    PF13401.1   4 agilvvtGesGvGKTtllrrlarqldeeaeaae.karvvfveapastspkellqkllsalglpakg............rltteellealqealrrrrtrlliiDEaqrL...........s..eealeel.rslldd..etgvklvl 121
                   +++ ++Ge  +GKT l+  l  + +  +e+   + ++++++        + lq++++ +g+++++            +  + ell+  +  + + r  ll++D a  L           s  + +l ++ r l     e g+++vl
  MMETSP0890-20130614|40813_1 133 GSLTELYGEFRTGKTQLCHTLCVTSQLSSEQGGgEGKAMYIDTEGTF-RPDRLQEIAERFGVDKDEvlenvvcaraynTEHQTELLKSACGLMSEDRFVLLVVDSATALyrtdyigrgqlSdrQVHLALFlRQLTRMamEFGIAVVL 278
                  566779******************99988888898999999988888.67778*************999999999777666666666666666555558********9988766665544144444444434443335577777766 PP

>> PF03796.10  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.017        39       2      45 ..     115     159 ..     114     173 .. 0.86
   2 ?    6.6   0.0    0.0012       2.7     145     178 ..     244     282 ..     206     288 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.017
                  -----HHHHHH--.------EEEEEESTT---HHHHHHHHHHHHH CS
   PF03796.10   2 lstgftdLDelts.glqksdLiiiaaRPsmGKtalalniarnval 45 
                  ++tg t LD+l++ g++ ++L  + +    GKt+l+ +++   +l
  MMETSP0890-20130614|40813_1 115 ITTGSTALDNLLNgGIETGSLTELYGEFRTGKTQLCHTLCVTSQL 159
                  89********99868********************9988766554 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0012
                  -.....----HHHHHHHHH---HHHHHH----EEEEEE- CS
   PF03796.10 145 k.....ksenrqqevseisrsLkaLAkeLnvpvvaLsQL 178
                  +     + + rq  ++ + r+L  +A e+ ++vv+  Q+
  MMETSP0890-20130614|40813_1 244 DyigrgQLSDRQVHLALFLRQLTRMAMEFGIAVVLTNQV 282
                  3344446788************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       574  (0.0419836); expected 273.4 (0.02)
Passed bias filter:                      443  (0.032402); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:01.14
# Mc/sec: 737.66
//
Query:       MMETSP0890-20130614|40837_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      212  (0.0155061); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.38s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 248.19
//
Query:       MMETSP0890-20130614|40846_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-30  103.0   0.0    9.3e-30  102.7   0.0    1.1  1  PF08888.6 HopJ type III effector protein


Domain annotation for each model (and alignments):
>> PF08888.6  HopJ type III effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   6.8e-34   9.3e-30       3     108 ..      26     132 ..      23     136 .. 0.94

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 6.8e-34
                  HHHHHHHHHH-GGG--HHHHHHHHHHHEEE----EE--.--EE-TTS----HHHHH---TT---HHH.HHHH---IIIIIITT-TT----HHHHHHHH------EESS CS
    PF08888.6   3 leelleklksepeeieFedtlavieeeydftptaFkng.eleneageneGsckifafakleelseee.tLalFgeyYredvlenpegedHqniRnfmktgwegikfek 108
                  l+++l+kl+++ e i+ ++tl+vie  yd++p  F+ g e++neag+neGs+ki++f kl ++++ + tL++Fg+ Y+ dvl++pege+HqniR++mk g+++i+f +
  MMETSP0890-20130614|40846_1  26 LSAFLQKLRNDDEVIDIKETLEVIEGLYDYSPKPFSIGdEISNEAGQNEGSAKILSFVKLAGVEDLDiTLRCFGSAYK-DVLADPEGESHQNIRALMKLGLDAIEFPQ 132
                  6789**********************************669**********************986549*********.**************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       278  (0.0203335); expected 273.4 (0.02)
Passed bias filter:                      273  (0.0199678); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.37s 00:00:00.77 Elapsed: 00:00:00.62
# Mc/sec: 568.17
//
Query:       MMETSP0890-20130614|40865_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.0   0.0      0.011   15.3   0.0    2.6  2  PF00023.25 Ankyrin repeat
      7e-08   32.5   0.0    1.5e-07   31.5   0.0    1.5  1  PF12796.2  Ankyrin repeats (3 copies)
    1.1e-07   31.7   0.1    2.4e-07   30.6   0.1    1.6  1  PF13857.1  Ankyrin repeats (many copies)
    2.3e-05   24.6   0.0      0.012   15.9   0.0    2.5  2  PF13637.1  Ankyrin repeats (many copies)
    3.8e-05   23.2   0.2    7.5e-05   22.2   0.2    1.6  1  PF00226.26 DnaJ domain
     0.0001   22.0   0.0       0.81   10.0   0.0    3.3  3  PF13606.1  Ankyrin repeat
  ------ inclusion threshold ------
       0.11   10.8   0.6       0.13   10.5   0.4    1.1  1  PF04632.7  Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.6e-06     0.013      15      31 ..       4      20 ..       2      22 .. 0.91
   2 !   15.3   0.0   5.9e-06     0.011       4      32 ..      25      54 ..      23      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHTTSSTTHB CS
   PF00023.25 15 levvklLlsqGAdlnaq 31
                 + vv+lL+++GAd+na+
  MMETSP0890-20130614|40865_1  4 PHVVRLLVEAGADVNAK 20
                 78*************97 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 5.9e-06
                 BHHHHHHHTTHHHHHHHHHH.TTSSTTHBH CS
   PF00023.25  4 TPLHlAalrgnlevvklLls.qGAdlnaqd 32
                 TPL+ Aa +++l+ v+ L+    Ad+ +++
  MMETSP0890-20130614|40865_1 25 TPLMAAAASDDLDLVQTLIIdLSADPFIRN 54
                 *******************99999988876 PP

>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   7.7e-11   1.5e-07      40      89 .]       5      54 ..       1      56 [. 0.89

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 7.7e-11
    PF12796.2 40 eivklLleagadvnakdkegntpLhlAvrnghlelvklLl.ekgadvnlrd 89
                  +v+lL+eagadvnak    +tpL++A+ + +l+lv+ L+ +  ad+ +r+
  MMETSP0890-20130614|40865_1  5 HVVRLLVEAGADVNAK-CWDKTPLMAAAASDDLDLVQTLIiDLSADPFIRN 54
                 699************9.5999***************999878899988876 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   1.2e-10   2.4e-07       1      55 [.      10      63 ..      10      64 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.2e-10
    PF13857.1  1 Llehg.padvnatdeggntpLhlAakggalevvrlLl.apgadlnlrdsdgltaldl 55
                 L+e+g ++++ ++d+   tpL+ Aa   +l++v+ L+ +  ad+ +r+ +g  a d+
  MMETSP0890-20130614|40865_1 10 LVEAGaDVNAKCWDK---TPLMAAAASDDLDLVQTLIiDLSADPFIRNGEGMMAADY 63
                 89***7888888887...**********************************99998 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0072        14      16      30 ..       6      20 ..       2      24 .. 0.86
   2 !   15.9   0.0   6.2e-06     0.012       3      40 ..      25      63 ..      25      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0072
    PF13637.1 16 lvklLlekgidinrt 30
                 +v+lL+e g+d+n++
  MMETSP0890-20130614|40865_1  6 VVRLLVEAGADVNAK 20
                 89***********97 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 6.2e-06
    PF13637.1  3 taLhyaaisgrlelvklLl.ekgidinrtdesGntaLhi 40
                 t+L+ aa+s +l+lv+ L+ +  +d+  ++++G+ a ++
  MMETSP0890-20130614|40865_1 25 TPLMAAAASDDLDLVQTLIiDLSADPFIRNGEGMMAADY 63
                 79**************777699***********999877 PP

>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   3.9e-08   7.5e-05      11      53 ..     140     190 ..     118     194 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.9e-08
                  T--HHHHHHHHHHHHHHT-TTT--SCC........HHHHHHHHHHHHHHHH CS
   PF00226.26  11 dasdeeIkkaYrklalkyHPDknkdde........eeaeekfkeineAyev 53 
                  +   +++++a+r+ +lkyHPDk++ +            ++ f ++++A+e 
  MMETSP0890-20130614|40865_1 140 NKALDTVRRAWRRHVLKYHPDKHPPEYalwdeqaqTSWHQHFLQVQAAFEF 190
                  5567899***************87766888877765556777777777765 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00042      0.81      14      30 .]       3      19 ..       1      19 [. 0.90
   2 !    8.1   0.0    0.0016       3.2       4      22 ..      25      43 ..      23      50 .. 0.88
   3 ?   -1.7   0.0       2.4   4.7e+03       7      16 ..      58      67 ..      58      75 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00042
    PF13606.1 14 rielveaLlengadina 30
                 ++ +v++L+e+gad+na
  MMETSP0890-20130614|40865_1  3 SPHVVRLLVEAGADVNA 19
                 789************96 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
    PF13606.1  4 TpLhlAasngrielveaLl 22
                 TpL+ Aa +  ++lv+ L+
  MMETSP0890-20130614|40865_1 25 TPLMAAAASDDLDLVQTLI 43
                 9***************998 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.4
    PF13606.1  7 hlAasngrie 16
                 ++Aa ++r++
  MMETSP0890-20130614|40865_1 58 MMAADYCRTQ 67
                 7999999864 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   6.5e-05      0.13     541     626 ..     100     183 ..      89     199 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.5e-05
    PF04632.7 541 aapaasraalrdalaalrvgravlrLrralara..lpaparaaidavlaalafraraaarkerrlaapaalldaldaalaalaadpaa 626
                  ++++++ra+  +++++l+ +++vl+L  +la+a   ++   +a+d v +a + r   + ++++    p++ + + ++a+  ++++  +
  MMETSP0890-20130614|40865_1 100 RTASERRATHLWVISDLQNALNVLDLPNELASAlrKTQTQNKALDTVRRAWR-RHVLKYHPDK---HPPEYALWDEQAQTSWHQHFLQ 183
                  678999**************************87655666666777777777.3333333333...3555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       395  (0.0288912); expected 273.4 (0.02)
Passed bias filter:                      293  (0.0214307); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.63
# Mc/sec: 810.20
//
Query:       MMETSP0890-20130614|40866_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-17   63.0   0.0      4e-17   62.4   0.0    1.3  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
    1.7e-05   24.9   0.0    2.9e-05   24.1   0.0    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
    4.5e-05   23.4   0.0    0.00023   21.1   0.0    2.0  1  PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
      0.001   18.5   0.0     0.0019   17.6   0.0    1.4  1  PF13661.1  2OG-Fe(II) oxygenase superfamily
     0.0081   16.3   0.0      0.016   15.3   0.0    1.5  1  PF13759.1  Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.5e-20     4e-17       3     100 .]     143     248 ..     141     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.5e-20
    PF13640.1   3 lnry.gpggflspHvDnse.......sssrrltlllylndpeweeeGGelelypsd.rsegvakevedeevv...pkpgrlvlFksdrslHrvtpvgaqgrrlaitgwft 100
                  l+ry + + +++pHvD           ++r+ltl+lylnd   +++GG l+l+++  +  + a++  +  +    p++g+l+lF s+ ++H+v+p+  qg r+a+ +wf+
  MMETSP0890-20130614|40866_1 143 LARYaQGRPGFRPHVDAVVangigsrPDPRVLTLVLYLNDVP-KQNGGILRLWRPGfE--ALARDHPELATIdlpPRAGTLLLFWSAVVWHQVKPM-RQGDRYALSMWFH 248
                  66775777899******98********************666.8*********99954..444444432222356*********************.***********97 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   2.9e-05       6      98 ..     142     248 ..     137     249 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.1e-08
                  EEEEEES--E-EEEEEEEESS..........SCEEEEEEE......T--EEEEEE-EE...........SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEEE CS
   PF03171.15   6 rvnrYpppekglglgpHtDne..........nriltillq......ddggglqfrked...........kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislafflr 98 
                  +++rY   +   g++pH+D             r+lt++l+      ++gg l++ +++            +id pp  ++ll+++              v+H+v+p ++g R++l  +++
  MMETSP0890-20130614|40866_1 142 MLARYA--QGRPGFRPHVDAVvangigsrpdPRVLTLVLYlndvpkQNGGILRLWRPGfealardhpelATIDLPPRAGTLLLFWSA-----------VVWHQVKPMRQGDRYALSMWFH 248
                  577888..7889*******************************************************99999999999877777777...........58******************98 PP

>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.5e-08   0.00023       3     197 ..      20     228 ..      18     237 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 8.5e-08
                  H---EEE-----HHHHHHHHHH---THHHHHT-------EE----B-----BS..GGTEEEE---HHH.........HHHHHHHHH----SEEE.....................EEEEE..E---S-----E.EEE-GGGTS-...EE----EE-EEEESS-B-S----EEEE---------.......................-EEE----............. CS
    PF05721.8   3 edGylviegflsaeevealraeiealldralesgdkidfffeekaaadedgll..eksinkvghflhp.........rkvadlvrailgqdvyva..................avlqsmyqdifkqpkiGgevqpwHqDstflp...tdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrll 197
                  + Gy+   +f+s++ev+ l++e+++ +d++++   +++++ e+ ++ + d+ +  ++  n+ g++ +          + +a++v++ ++ +++v                   ++ +s+   +      G ++ ++H D+  ++    +p ++v+++ ++l d++++nG+        +w++g  ++ ++++++              ++ ++ +aG+++lf+++++
  MMETSP0890-20130614|40866_1  20 RFGYTQASNFISKQEVAILLQEAKQREDYQAACIVRRSVNSEKQKNIRGDDIVwiQNEKNALGTITKKlqklgkelgPALAGKVSNGIRAPTAVSnilkrcqtrrgnrtlladTGASSFPPAMLARYAQGRPGFRPHVDAVVANgigSRPDPRVLTLVLYLNDVPKQNGGIL-----RLWRPGF-EALARDHPE------------LATIDLPPRAGTLLLFWSAVV 228
                  67***********************9888888888888887777777777666778888888888888888999999788888888888887777888888888777777776444444433555555699999*************9999*******************98.....5687774.223333444............455889999999888888764 PP

>> PF13661.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07    0.0019      14      57 ..     145     189 ..     129     198 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 7e-07
    PF13661.1  14 altratrgdffdpHiDadpsql....gkprflsallYLNedwdadfdG 57 
                  +++++++g  f pH+Da ++++    + pr l+++lYLN d ++  +G
  MMETSP0890-20130614|40866_1 145 RYAQGRPG--FRPHVDAVVANGigsrPDPRVLTLVLYLN-DVPKQNGG 189
                  56778888..9****************************.99998865 PP

>> PF13759.1  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.9e-06     0.016      59      99 ..     204     244 ..     174     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.9e-06
    PF13759.1  59 keplqplvvvkpkeGdlvlF.pSslrHsvepneseeeRisis 99 
                  ++p  +++++ p++G+l+lF ++ ++H+v+p+++  +R+ +s
  MMETSP0890-20130614|40866_1 204 DHPELATIDLPPRAGTLLLFwSAVVWHQVKPMRQG-DRYALS 244
                  567778999*******998725578******9987.898887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       349  (0.0255266); expected 273.4 (0.02)
Passed bias filter:                      309  (0.0226009); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:01.04
# Mc/sec: 824.90
//
Query:       MMETSP0890-20130614|40874_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-47  162.4   7.9    1.8e-47  161.9   5.5    1.1  1  PF00112.18 Papain family cysteine protease
    9.1e-07   27.6   0.0    0.00025   19.5   0.0    2.1  2  PF03051.10 Peptidase C1-like family


Domain annotation for each model (and alignments):
>> PF00112.18  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   5.5   2.7e-51   1.8e-47       5     217 ..      40     262 ..      38     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 161.9 bits;  conditional E-value: 2.7e-51
                  --CCCTT.GGG---B------HHHHHHHHHHHHHHHHHHS.S---B-HHHHHHH-TTTS-TT----HHHHHHHHHHC---BBTTTS---SSC-....S--CCCC--C.CCCECEEEEEESS.........-HHHHHHHHHH-S-EEEEE--CCH...CCTTEEE--BSST.CC-TTG--EEEEE---BSCTTC-EEEEE-SB-TT------EEEESSSSSGGGTTSSEE CS
   PF00112.18   5 vDwrekkgavtpvkdqgqCGsCWafsavgalegrlaiktkkklvslSeqelvdCskeenegCnGGlmenafeyikknggivtekdypYkakeg...gkCkkkkkkekevakikgygkvken.........seealkkalakngPvsvaidasee...dfqlYksGvyket.ecsstelnhavlivGygvengkkyWivkNSWgtdwGekGYiriargknnecgieseav 217
                  vDw  +  a t++kdqg+CGsCWafs+++ +e+ l+++++    slS +elvdC+k  + gCnGG   +a +y+ + ++++t++dyp k++++   ++C+ ++ + + va +++y+    +         +e al++al+k+gP+s++++  e+   d+++Y+sG+ +++ +++ + ++h v++vG +++ ++++W v+NSWg++wGe+G+ir+  g++n c ++ eav
  MMETSP0890-20130614|40874_1  40 VDWSVN--ATTAIKDQGSCGSCWAFSTIEGVESSLFLQSGVLPESLSTEELVDCDK-VDAGCNGGDIPTACRYLER-KNVDTDADYPDKSSKSgrtQSCSWDSGE-Y-VAAVTSYSFAIPEcsqgdcsnqDEYALAAALKKYGPLSICVNSGEDqtgDWAKYTSGIASGNcKAKAHLIDHCVQLVGVDTTASEPFWKVRNSWGSSWGEDGFIRLPFGQDNYCCVACEAV 262
                  688883..79*****************************98889***********8.99****************9.9********9996665556788888654.3.34444444322222344566669*******************99987789***********654455889********************************************9998876 PP

>> PF03051.10  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00043         3      48      76 ..      39      68 ..       6      94 .. 0.72
   2 !   19.5   0.0   3.7e-08   0.00025     354     396 ..     206     246 ..     199     285 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00043
   PF03051.10 48 vFstevetd.evtnqkqsGRCWlFaalnvl 76
                 v + +v++   + +q + G CW F+++  +
  MMETSP0890-20130614|40874_1 39 VVDWSVNATtAIKDQGSCGSCWAFSTIEGV 68
                 4445555444899************99766 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 3.7e-08
   PF03051.10 354 ygeslmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                   ++ l++H + l+gvd   + +   wkv nsWG   Ge+G+  
  MMETSP0890-20130614|40874_1 206 AKAHLIDHCVQLVGVDT--TASEPFWKVRNSWGSSWGEDGFIR 246
                  567799**********9..445556***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       390  (0.0285255); expected 273.4 (0.02)
Passed bias filter:                      254  (0.0185781); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:01.05
# Mc/sec: 659.57
//
Query:       MMETSP0890-20130614|40873_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-22   77.3   0.4    5.3e-21   74.8   0.0    2.3  3  PF00069.20 Protein kinase domain
    3.5e-08   32.7   0.0    8.8e-08   31.4   0.0    1.7  2  PF07714.12 Protein tyrosine kinase
     0.0073   16.3   0.0      0.023   14.7   0.0    1.9  1  PF13499.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.2e-24   5.3e-21     139     260 .]       2     127 ..       1     127 [. 0.84
   2 ?   -1.5   0.1      0.22     1e+03      19      46 ..     180     207 ..     178     230 .. 0.77
   3 ?   -1.5   0.0      0.21   9.7e+02      41      83 ..     292     337 ..     284     365 .. 0.62

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.2e-24
                  E------EEE....CEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTST.....HHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20 139 iaDFGlakkl....eksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge.....seedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  +aDFG+a+ l    +  ++k t  vgt  YmAPE    +   +++ D+Ws+G+il+ l+tg+ p+++      +ee q+ ++    +++  +d+ k     +++ +l + +l+  p++Rlta+++l+hpw+
  MMETSP0890-20130614|40873_1   2 LADFGSARYLrrrdNMIERKPTAHVGTLAYMAPEQHI-GGTVDAALDLWSFGIILAALCTGRHPLRDVpreswHEEMQRDRLPDGASPQATKDWAKI----PQALSLAQGCLRLHPNDRLTAKRALEHPWI 127
                  89******999998888999*****************.99**************************9954444444444444444444444444444....99***************************7 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.22
                  EETTCCEEEEEEEEEGGGHHHHHHHHHH CS
   PF00069.20  19 kkkktgkkvAvKilkkeeekskkektav 46 
                  ++++++k+v+v +++k++++++ ++t+ 
  MMETSP0890-20130614|40873_1 180 QQQSDQKQVVVDTFHKSDRNRTRTRTKK 207
                  5788889999999999999888776654 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.21
                  HHHHHHHHHHHHHHHH-TTB--EEEEEEE...STEEEEEEE--SC- CS
   PF00069.20  41 kektavrElkilkklsHpnivkllevfee...kdelylvleyvegg 83 
                   +++ ++E +i ++ls p +++ l+ +++   ++ l+lv+ +  ++
  MMETSP0890-20130614|40873_1 292 DDNYYTEETNISRHLSLPQVLEALRQVKRnklQKILLLVVALRAKD 337
                  4445566999999999999999998888855444444555554444 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.9e-11   8.8e-08     144     253 ..       2     119 ..       1     124 [. 0.73
   2 ?   -2.7   0.0      0.51   2.3e+03      50      80 ..     298     331 ..     288     363 .. 0.49

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.9e-11
                  E-----CEESTTTSCE..EESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-B....S---TTSBHHHH...HHHHHHT-SSGGGS--HH CS
   PF07714.12 144 isDfGLardiekddyy..kkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkr....lekpekcpeely...elmkqCweeepeeRptfk 253
                  ++DfG ar + ++d++  +k + +   + +mapE    +++  + D WsfG++l  ++t g++p  ++  e+  e +++++      ++ +k ++++    +l + C++ +p++R t k
  MMETSP0890-20130614|40873_1   2 LADFGSARYLRRRDNMieRKPTAHVGTLAYMAPEQHIGGTVDAALDLWSFGIILAALCT-GRHPLRDVPRESWHEEMQRDRLpdgaSPQATKDWAKIPqalSLAQGCLRLHPNDRLTAK 119
                  69********99999954444555689*******************************9.99******999999988665431111222222223332111345678888888887766 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.51
                  HHHHHHHHT-BTTB--BEEEBESSSS...EEEEE CS
   PF07714.12  50 eeakimkklkhpnivkllgvctkeep...llivt 80 
                  ee++i ++l+ p++++ l  + +++    ll+v+
  MMETSP0890-20130614|40873_1 298 EETNISRHLSLPQVLEALRQVKRNKLqkiLLLVV 331
                  5555555555555555555555222212233333 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.1e-06     0.023       2      58 ..     394     446 ..     393     448 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.1e-06
    PF13499.1   2 lkeaFkllDkdgdgyldkeeLlrllkhlgselsdeevrevldyifkelDkngdGvls 58 
                  l++aF+ l  dg+g++  +e+++ + +l+    +++  ++++ i+++lD  g+G+++
  MMETSP0890-20130614|40873_1 394 LCTAFEDLSIDGSGQVANTEFVAGFLFLQ----RRSRYDLAQPILRDLDPAGTGTVD 446
                  8999*************************....*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       695  (0.0508338); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.99
# Mc/sec: 1232.07
//
Query:       MMETSP0890-20130614|40875_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-14   51.4   0.0    1.9e-13   50.3   0.0    1.5  1  PF12706.2 Beta-lactamase superfamily domain
     0.0088   14.8   0.0      0.011   14.5   0.0    1.2  1  PF07993.7 Male sterility protein


Domain annotation for each model (and alignments):
>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   2.7e-17   1.9e-13      97     194 .]      21     168 ..       3     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 2.7e-17
                  -EEE-SSE.EE--------HHHHSHH--EEE....................................................S--EEE-----S...-HHHH.HH.SEEEEE---B....--S...-S---------HHHH-TTSEEEEES- CS
    PF12706.2  97 kieegdww.itavpaqHgsgryglnkgfvle..................................................tegkkvyysgDtgy...dfkei.kgadllileagfydddeepearekgHstpeeavevakdlgakkliliHf 194
                   + e++w+ ++++p++H+ + +g    ++++                                                  ++ +kv++ gDt+    +f+ i k+ad+ ++ea+  d + + +a+ +gHstp  a+  a+ ++ak l+l+Hf
  MMETSP0890-20130614|40875_1  21 TVYEDEWNiVQCAPLRHTVPCVG----YAITekprklkihvekaiqaglppgrayktlqqgedvtlndgtiiratdvtippDPPRKVVICGDTAKptsEFAHIaKNADIFVHEATLSDFEMD-KAIVRGHSTPGMAGSFARSIQAKWLVLTHF 168
                  6778888888999*****99988....44444444444445555555555555555666666666667777779999999989************86548888799***********99999.*****************************9 PP

>> PF07993.7  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-06     0.011      61     149 ..     101     185 ..      84     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-06
    PF07993.7  61 rikvvegDlseprlgLseedlqelaeevdviihsAAtvnfeepykellrtNvlGtrevlelakklkklvllhvSTavvagere.geveek 149
                  r +v++gD ++p      ++++++a++ d+ +h A   +fe +   ++   + G+   +  + + k lvl h S  ++ + ++ + +++ 
  MMETSP0890-20130614|40875_1 101 RKVVICGDTAKPT-----SEFAHIAKNADIFVHEATLSDFEMDKAIVRGHSTPGMAGSFARSIQAKWLVLTHFSARYIPSPQRyDALKQS 185
                  6689999999987.....9************************************9888877778888*******777655540444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       406  (0.0296957); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.41s 00:00:00.99 Elapsed: 00:00:00.85
# Mc/sec: 778.11
//
Query:       MMETSP0890-20130614|40877_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-28   99.0   0.0    5.5e-23   81.4   0.0    2.4  2  PF05193.16 Peptidase M16 inactive domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.31   11.1   0.0    1.6  1  PF00533.21 BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> PF05193.16  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-06      0.01     147     179 ..       2      34 ..       1      39 [. 0.94
   2 !   81.4   0.0   8.1e-27   5.5e-23       2     182 ..     374     601 ..     373     603 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.5e-06
                  EECESHHHHHHHHHHHHHHHHHHT.SSHHHHHH CS
   PF05193.16 147 tadpekvekavdvilnelrrlkengiteeeler 179
                  tad +++++av ++l+e rrl e+git++eler
  MMETSP0890-20130614|40877_1   2 TADAGRWQDAVTAALAETRRLGEFGITQSELER 34 
                  78999***************************9 PP

  == domain 2    score: 81.4 bits;  conditional E-value: 8.1e-27
                  H-HHHHHHHHHHHCCGCCEEEEEEESS...-HHHHHHHHHHHHCCSHHHH..............GGG--S-SSEGGGSSEEEEEEECSSSSCEEEEEEEEEECG....................................GCGTTHHHHHHHHHHHCCCHHHCHHHHHHTTTT-ESEEEEE.EC--S...EEEEEEEEECESHHHHHHHHHHHHHHHHHHT..SSHHHHHHHHH CS
   PF05193.16   2 ltredlkdfykkhytpdnmvvvivGdv...dheelvkliekyfgdlpaske...........ppppkptgfplepselkkpevflkdldeeqahvalafpgppi....................................esdpdsialkvlnelLgggassrLftelreksglaysvsaf.ldsys.dsglfgisatadpekvekavdvilnelrrlken.giteeelerakn 182
                  +t++ +k++  +++tp+n++vvivGd+   +++e+v+l+e y g+++a              p+ + p+  + +++e  k+  +   +  ++a +++ + +p++                                    ++ +  +al++l+e+++ +    Lf+ +re+++l+y++++  +d+ +   g+f +++ta p +++ a+++++++l +l+ +  ++ + l+ a++
  MMETSP0890-20130614|40877_1 374 VTLDNIKEAMTAIFTPSNVEVVIVGDFvgtTPTEAVELAELYIGSVDAQPIsqnsvvvadknPAESIPIQIRADDEEELKRMHVEDSD--PRAVAYIVGAAPNRagfladgsalvdavvgnvlkkntnskvsvniparwrHPVFATAALALLQEVINRR----LFSVVRERRQLTYDANFQlSDNERlLGGWFLVTVTASPANADAALQACKDTLAALRGQhPPSRDNLDSARR 601
                  79************************8666889**************9988*********9988888888888855555555555555..5********************************************************************....******************666666999*****************************996699999999986 PP

>> PF00533.21  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.5e-05      0.31       8      52 ..     391     440 ..     390     463 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.5e-05
                  TCEEEE.SSTTSSHHHHHHHHHHHCT-EEESSGSSSCSEEEEECC....B CS
   PF00533.21   8 glkfyi.gtfdnfnreeleelikelGGkvstevskktthlvvgep....e 52 
                  ++ ++i g f +++++e+ el++   G+v  +  ++++ +v++++     
  MMETSP0890-20130614|40877_1 391 NVEVVIvGDFVGTTPTEAVELAELYIGSVDAQPISQNSVVVADKNpaesI 440
                  788999**************************************944440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       343  (0.0250878); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.39s 00:00:01.42 Elapsed: 00:00:01.04
# Mc/sec: 1603.72
//
Query:       MMETSP0890-20130614|40881_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   90.1   0.2    6.2e-25   88.1   0.1    1.8  1  PF00504.16 Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> PF00504.16  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.1   4.5e-29   6.2e-25      18     155 ..      40     187 ..      28     188 .. 0.80

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 4.5e-29
                  XXX.---.............-TTTTT--------TTT------------------S--TT--...STT-------S-TT.THHHH---HHHHHH.HHTT------....-----------------------------STTT----TTTTT------- CS
   PF00504.16  18 lglskdp.............tlkrlreaEliHGRvAMlavlGalvpelltklsaaskfaelpa..waeagglslptllalqillligflelare.qelkapeseg....sekraypGglgfdplglakdeeekaelklkEiknGRlAMiaflgfvvqa 155
                  +g++kd+             + ++ reaEl+H+R++Mla++G+ ++e++  l +  + +++p+   ++a      + ++ +++++ig++e+  +   +k+pe  +     +++++ G+ gfdpl+++    +ka+l++ E++ GR AM++++g+v+q+
  MMETSP0890-20130614|40881_1  40 FGFAKDQgfasvltqkngafSARWAREAELKHARICMLAAVGYPLQEVFHPLFG--GNIDVPSlvSFQAT---PLQGFWPIVVAYIGAIEFSTSiPAYKDPEV-QgwymLKDDHKSGDYGFDPLEFG----KKADLREQELTVGRVAMLGLAGMVAQE 187
                  4666666666677777889999*************************9977543..56788885534444...55567889*********9644144444444.36*99889999**********98....799***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       232  (0.016969); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:01.01
# Mc/sec: 462.66
//
Query:       MMETSP0890-20130614|40886_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       367  (0.0268432); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.59s 00:00:01.03 Elapsed: 00:00:01.00
# Mc/sec: 879.46
//
Query:       MMETSP0890-20130614|40884_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-29  101.7   0.6    3.1e-29  101.7   0.4    2.6  3  PF12706.2  Beta-lactamase superfamily domain
    4.3e-09   35.6   0.0    5.7e-08   31.9   0.0    2.6  3  PF13691.1  Family description
    8.5e-07   28.7   0.1    4.4e-06   26.3   0.1    2.2  2  PF00753.22 Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> PF12706.2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.6      0.46   2.1e+03     153     153 ..     184     184 ..     114     302 .. 0.60
   2 ?   -1.3   0.7      0.26   1.2e+03      62     116 ..     273     327 ..     223     407 .. 0.65
   3 !  101.7   0.4   6.8e-33   3.1e-29       2     194 .]     418     624 ..     417     624 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.46
                  E CS
    PF12706.2 153 l 153
                  +
  MMETSP0890-20130614|40884_1 184 I 184
                  1 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.26
                  SSHHHHHHHH..H---..................--EEE-SSEEE--------HH CS
    PF12706.2  62 gplgvaeflrekkagikalepefdkkraieidkekkieegdwwitavpaqHgsgr 116
                  g+  v +fl+++++    +++ +d kr+++  ++  +++ d +i++   +H+++ 
  MMETSP0890-20130614|40884_1 273 GSHSVTHFLTHQHHISPFRTAIHDTKRLQALAPDLYAQIKDPTIRTKIQMHKNEV 327
                  4445555555444444444444444444444444444444444444444444433 PP

  == domain 3    score: 101.7 bits;  conditional E-value: 6.8e-33
                  EEEES-----T.T-SS-.-SS-HHHHHTT--EEE-S---GGG.S-....HHHHHHS-T.....EEESSHHHHHHHH.........................H---..................--EEE-SSEEE--------HHHHSHH--EEE...S--EEE-----S-...HHHHHH.SEEEEE---B....--S...-S---------HHHH-TTSEEEEES- CS
    PF12706.2   2 riLiDpgfgtr.slrlreqppaalldlpridavlisHaHaDHilgldslletikrlnk.....pvygplgvaeflrek.......................kagikalepefdkkraieidkekkieegdwwitavpaqHgsgryglnkgfvle.tegkkvyysgDtgyd...fkeikgadllileagfydddeepearekgHstpeeavevakdlgakkliliHf 194
                  ++L+D+g+gt  +l    + + ++  l+++ av+isH HaDH+lgl+++l  ++++        + +p  v ++lre+                       +        + +++++++  ++ ++++       ++++H++ +yg    ++l+   g +++ysgD++++   ++++k++ +li+ea+f dd++  +a++k+Hst +ea+ +  d++a + +l+Hf
  MMETSP0890-20130614|40884_1 418 AMLLDAGEGTLgQLS---KVFGSDGGLDKLAAVWISHPHADHHLGLPRILTQRAARFPhldpiVLMAPTPVLSWLREYaqilghetklssaytpvdctmicH--------KEVPHPCAQTLQK-VLSLER--CWNIRVDHCAHAYG----LILHsVHGWSLCYSGDCRPTpelARQAKQVTVLIHEATFEDDKYL-DAVAKKHSTLSEAISIGSDMNALRTVLTHF 624
                  589******997764...4444444556*********************9999999999***99************98887776666655555443322222........2223222222222.222222..22368899999999....9999549************5444588899***********99999.*****************************9 PP

>> PF13691.1  Family description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.3e-11   5.7e-08       2      49 ..      29      74 ..      28      86 .. 0.90
   2 ?   -2.5   0.0      0.74   3.4e+03      14      33 ..     408     427 ..     400     453 .. 0.73
   3 ?   -0.3   0.0      0.14   6.6e+02      33      56 ..     460     483 ..     459     496 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.3e-11
    PF13691.1  2 fvsvssrDTsgplilLffdskrYlFGsvgEGtQRaileqklrlsklkd 49
                 ++s+ s+D+  p++l ++d +r +F + gEG QR+++eq++r+sk++ 
  MMETSP0890-20130614|40884_1 29 IISTWSDDCG-PSVLFNLDGERVVF-NAGEGWQRICVEQRIRISKIDL 74
                 6888888887.**************.*******************975 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.74
    PF13691.1  14 lilLffdskrYlFGsvgEGt 33 
                   i+L++ sk  ++ + gEGt
  MMETSP0890-20130614|40884_1 408 AIFLQCTSKAAMLLDAGEGT 427
                  67788777544444888887 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.14
    PF13691.1  33 tQRaileqklrlsklkdvFLtggs 56 
                    R+++++  r+ +l+ ++L+ ++
  MMETSP0890-20130614|40884_1 460 LPRILTQRAARFPHLDPIVLMAPT 483
                  56999***************9865 PP

>> PF00753.22  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.31   1.4e+03       8      47 ..      40      75 ..      38      78 .. 0.78
   2 !   26.3   0.1   9.7e-10   4.4e-06       3      95 ..     403     514 ..     401     620 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.31
                 EEEEECSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEE CS
   PF00753.22  8 syLvegdggaiLiDtGlgteaalalllallglgpkdvdav 47
                 s+L   dg+++++ +G+g++++       ++++  ++d +
  MMETSP0890-20130614|40884_1 40 SVLFNLDGERVVFNAGEGWQRICVE----QRIRISKIDLM 75
                 5677789************999886....67777777765 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 9.7e-10
                  EEEEEEEEEE.CSSEEEEES--SCHHHHHHHHHHHHHSHGGGEEEEEESSSSTTTH--HHHHHHHCTEEEEEEHHHHHHHHTHHHHHHHHHHH...................C CS
   PF00753.22   3 evgvnsyLve.gdggaiLiDtGlgteaalalllallglgpkdvdavilTHaHaDHiGGlpglleafpapvvygaeearallrlalrdelkrkk...................p 95 
                   ++v++++++ + + a L D+G+gt ++l  +    + g++++ av ++H HaDH  Glp +l ++ a   +  ++   +++  l   + +++                   +
  MMETSP0890-20130614|40884_1 403 HRNVSAIFLQcTSKAAMLLDAGEGTLGQLSKV-FGSDGGLDKLAAVWISHPHADHHLGLPRILTQRAARFPHLDPIVLMAPTPVLSWLREYAQilghetklssaytpvdctmI 514
                  5789999999999******************9.*********************************99999888888877777776666665555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      222  (0.0162376); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.40s 00:00:01.39 Elapsed: 00:00:00.92
# Mc/sec: 1779.03
//
Query:       MMETSP0890-20130614|40892_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       774  (0.0566121); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.38s 00:00:00.96 Elapsed: 00:00:00.65
# Mc/sec: 1028.59
//
Query:       MMETSP0890-20130614|40896_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.078   13.4   0.2       0.16   12.3   0.1    1.5  1  PF02338.14 OTU-like cysteine protease


Domain annotation for each model (and alignments):
>> PF02338.14  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.2e-05      0.16       2      51 ..      65     135 ..      64     140 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.2e-05
                  ----HHHHHHHHHH-----..HHHHHHHHHHSS--HHHH...........................------------- CS
   PF02338.14   2 gDGnCLfhavsqqlwldhd..grkekheelrealveylr...........................ehrelfeefleee 51 
                  +DG CL +av +++ ld +  ++k++ +        ++                            + +e+f++++e+e
  MMETSP0890-20130614|40896_1  65 SDGMCLRQAVYRLIILDREeeLSKDLAR--------HMEptlceqctqiaiderifreiihtkkadQMEEDFQKQMEAE 135
                  7**************9988444444444........4443333444477777777778777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       720  (0.0526624); expected 273.4 (0.02)
Passed bias filter:                      398  (0.0291106); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.38s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 603.37
//
Query:       MMETSP0890-20130614|40900_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0031   16.4   0.0     0.0082   15.0   0.0    1.7  2  PF01531.11 Glycosyl transferase family 11


Domain annotation for each model (and alignments):
>> PF01531.11  Glycosyl transferase family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.24   3.3e+03      31      49 ..      17      34 ..       4      44 .. 0.53
   2 !   15.0   0.0     6e-07    0.0082     236     268 ..     280     312 ..     260     320 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.24
   PF01531.11 31 glftvnlngrlgnqkgeya 49
                  +  v+ ng lgnq +++a
  MMETSP0890-20130614|40900_1 17 AVISVQHNG-LGNQLFQFA 34
                 444444443.667666654 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 6e-07
   PF01531.11 236 gspaedvalltqCkhtilsistFswWaayLsgg 268
                   s a d+  lt  k  il+ st+++W+ +L+ g
  MMETSP0890-20130614|40900_1 280 RSIAADFVYLTRAKTLILTESTYAFWSGFLNRG 312
                  68999*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       296  (0.0216501); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.80
# Mc/sec: 1030.43
//
Query:       MMETSP0890-20130614|40905_1  [L=745]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   76.2   0.3    1.1e-21   76.2   0.2    2.0  2  PF00226.26 DnaJ domain
    1.3e-21   75.8  20.5    8.2e-10   38.0   1.4    6.0  6  PF13414.1  TPR repeat
      5e-15   54.2  12.5     0.0039   16.6   0.0    6.7  6  PF00515.23 Tetratricopeptide repeat
    2.5e-11   42.4  33.9      0.021   14.5   0.1    8.2  8  PF07719.12 Tetratricopeptide repeat
    3.2e-05   23.6  25.7      0.024   14.4   1.8    5.5  5  PF13424.1  Tetratricopeptide repeat
    3.4e-05   23.5  28.5    0.00089   18.9   0.7    6.4  5  PF13371.1  Tetratricopeptide repeat
    5.2e-05   23.6  13.9     0.0011   19.5   0.4    6.9  6  PF13432.1  Tetratricopeptide repeat
    0.00024   21.3  46.2       0.33   11.5   0.1    8.6  7  PF13428.1  Tetratricopeptide repeat
     0.0077   15.8   5.7        7.1    6.5   0.0    6.0  5  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.19   12.1  17.0        1.8    9.0   0.1    5.6  5  PF13174.1  Tetratricopeptide repeat
       0.53   10.0   9.7        6.6    6.6   0.2    5.7  6  PF13176.1  Tetratricopeptide repeat
       0.58   10.3  11.8         28    5.1   0.0    6.3  6  PF13431.1  Tetratricopeptide repeat
        3.4    6.9   6.6        1.6    8.0   2.7    1.8  2  PF07565.8  Band 3 cytoplasmic domain


Domain annotation for each model (and alignments):
>> PF00226.26  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       6.8   7.1e+03      39      61 ..      12      34 ..       5      35 .. 0.74
   2 !   76.2   0.2     1e-24   1.1e-21       1      64 []     668     729 ..     668     729 .. 0.98

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6.8
                 HHHHHHHHHHHHHHHHTSHHHHH CS
   PF00226.26 39 eaeekfkeineAyevLsdpekra 61
                 ++++ ++++++A++  s  +k++
  MMETSP0890-20130614|40905_1 12 RKKRISRQLKAAFDSVSSNDKKQ 34
                 56777888999999888888876 PP

  == domain 2    score: 76.2 bits;  conditional E-value: 1e-24
                  HHHHHTT--TT--HHHHHHHHHHHHHHT-TTT--SCCHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
   PF00226.26   1 dyYeiLgvpkdasdeeIkkaYrklalkyHPDknkddeeeaeekfkeineAyevLsdpekraeyd 64 
                  ++Y +Lg+ ++a  ++Ik+aY +lal+yHPD+nk+++  a+ ++++ineAye L+dp  ra yd
  MMETSP0890-20130614|40905_1 668 THYTVLGLGPQAQTNDIKRAYARLALQYHPDRNKSEH--ATAAMARINEAYECLKDPVARASYD 729
                  69*********************************99..************************8 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.1   4.9e-12   5.2e-09       6      69 .]     155     221 ..     150     221 .. 0.88
   2 ?    1.1   0.9      0.25   2.7e+02       5      66 ..     226     296 ..     223     299 .. 0.62
   3 !    6.5   0.4    0.0053       5.6      12      59 ..     321     367 ..     311     371 .. 0.81
   4 !   38.0   1.4   7.8e-13   8.2e-10       6      65 ..     481     544 ..     475     544 .. 0.88
   5 !   30.3   1.5     2e-10   2.1e-07       3      66 ..     517     579 ..     516     581 .. 0.95
   6 ?   -2.1   0.1       2.6   2.8e+03      27      52 ..     690     700 ..     682     729 .. 0.52

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 4.9e-12
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpn....naelyynlAlaylklgkdyeeAledyekAleldP 69 
                   +  G +l++ g+y +A++a+++Al+  pn    +a +++ ++ +yl l +++ eAl+d++ A ++dP
  MMETSP0890-20130614|40905_1 155 QYGNGVELYESGKYIQAVQALNQALSQAPNtwhqYAACLALRGGCYLLL-DQPIEALRDCQDAASRDP 221
                  566799*********************9994433477***********9.79***********99998 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.25
    PF13414.1   5 alkelGnalfkegdydeAieayekAleld...pnnae.......lyynlAlaylklgkdyeeAledyekAle 66 
                  al++ G   +++g+ + A+ ++  A +     p n +       +  ++A + +   ++ e+A     +A e
  MMETSP0890-20130614|40905_1 226 ALNRCGRLKLSRGQIEAAENEFASAKRAAlqqPFNTDavaatatADTGIADCKRYI-EHTEAAKSFMARAFE 296
                  68899999999999999999998887764222222112233444666666666664.466666665556655 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0053
    PF13414.1  12 alfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAle 59 
                  ++  + + + A +  ++Al l p ++++    A a+  + k+  e  +
  MMETSP0890-20130614|40905_1 321 KAAAKAQAERARRSADEALLLAPRDPVAARLKAVALATMKKW-SELEA 367
                  6677788899999*************************9865.55444 PP

  == domain 4    score: 38.0 bits;  conditional E-value: 7.8e-13
    PF13414.1   6 lkelGnalfkegdydeAieayekAlel..dpnnae...lyynlAlaylklgkdyeeAledyekAl 65 
                  +ke++  ++++g y  A+++y+ Al+l  d n+a    +++nlA+a l l +++ eA+++++kAl
  MMETSP0890-20130614|40905_1 481 AKERADSAYTRGHYRAAVAMYRDALRLegDDNDALrasVHANLAAAALVL-DRPSEAVDHCTKAL 544
                  799************************44444433666***********9.79***********8 PP

  == domain 5    score: 30.3 bits;  conditional E-value: 2e-10
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAle 66 
                  A ++ +l+ a++ + ++ eA+++++kAl  ++n+  + +++A a+ kl ++y eA++d++  l+
  MMETSP0890-20130614|40905_1 517 ASVHANLAAAALVLDRPSEAVDHCTKALLFRSNYMRARLRRARAHAKL-DHYTEAIKDFDAFLQ 579
                  78899******************************************9.7*********98776 PP

  == domain 6    score: -2.1 bits;  conditional E-value: 2.6
    PF13414.1  27 ekAleldpnnaelyynlAlaylklgk 52 
                  + Al++ p+                +
  MMETSP0890-20130614|40905_1 690 RLALQYHPD---------------RN 700
                  334444443...............22 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.1e-05     0.022       5      33 ..     156     184 ..     152     185 .. 0.92
   2 !   12.1   0.0   9.3e-05     0.098       2      33 ..     191     222 ..     190     223 .. 0.92
   3 ?   -1.4   0.0       1.7   1.8e+03       3      21 ..     226     244 ..     224     247 .. 0.88
   4 ?    5.3   0.0     0.013        14       7      33 ..     484     510 ..     482     511 .. 0.85
   5 !   16.6   0.0   3.7e-06    0.0039       1      33 [.     517     549 ..     517     550 .. 0.90
   6 !    9.0   0.0   0.00092      0.97       3      25 ..     553     575 ..     552     576 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   5 ynlGnaylklgkydeAleyyekALelnPn 33 
                  y+ G+ +++ gky +A+++ ++AL+  Pn
  MMETSP0890-20130614|40905_1 156 YGNGVELYESGKYIQAVQALNQALSQAPN 184
                  77899*********************998 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 9.3e-05
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   2 kalynlGnaylklgkydeAleyyekALelnPn 33 
                   +l  +G +yl l ++ eAl +++ A + +P+
  MMETSP0890-20130614|40905_1 191 ACLALRGGCYLLLDQPIEALRDCQDAASRDPT 222
                  678899************************97 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHTT-HHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAl 21 
                  al++ G + l+ g+ + A+
  MMETSP0890-20130614|40905_1 226 ALNRCGRLKLSRGQIEAAE 244
                  8999999999******997 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.013
                  HHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   7 lGnaylklgkydeAleyyekALelnPn 33 
                  ++   +  g y  A++ y+ AL+l+ +
  MMETSP0890-20130614|40905_1 484 RADSAYTRGHYRAAVAMYRDALRLEGD 510
                  66778899***************9765 PP

  == domain 5    score: 16.6 bits;  conditional E-value: 3.7e-06
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT CS
   PF00515.23   1 akalynlGnaylklgkydeAleyyekALelnPn 33 
                  a ++ nl++a l l ++ eA++++ kAL  + n
  MMETSP0890-20130614|40905_1 517 ASVHANLAAAALVLDRPSEAVDHCTKALLFRSN 549
                  56899***********************77666 PP

  == domain 6    score: 9.0 bits;  conditional E-value: 0.00092
                  HHHHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23   3 alynlGnaylklgkydeAleyye 25 
                  a  +++ a+ kl  y eA+++++
  MMETSP0890-20130614|40905_1 553 ARLRRARAHAKLDHYTEAIKDFD 575
                  6789*****************96 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1     2e-05     0.021       5      33 ..     156     184 ..     152     185 .. 0.91
   2 !   11.1   0.0   0.00026      0.27       2      33 ..     191     222 ..     190     223 .. 0.93
   3 ?   -0.4   0.1       1.2   1.2e+03       4      26 ..     227     249 ..     225     255 .. 0.65
   4 ?   -3.0   0.2       8.4   8.8e+03      14      30 ..     281     297 ..     274     299 .. 0.71
   5 ?    1.8   0.9      0.24   2.5e+02      18      34 .]     329     345 ..     322     345 .. 0.88
   6 !    9.6   0.3   0.00075      0.79       6      33 ..     483     510 ..     481     511 .. 0.91
   7 !   11.2   0.0   0.00023      0.24       2      29 ..     518     545 ..     517     550 .. 0.90
   8 !   13.6   0.2     4e-05     0.042       5      29 ..     555     579 ..     552     583 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                  y  G  +y++g+y +A++a+++Al+ +Pn
  MMETSP0890-20130614|40905_1 156 YGNGVELYESGKYIQAVQALNQALSQAPN 184
                  667999**********************8 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                   +l ++G +y+ l+++ eAl++++ A + dP+
  MMETSP0890-20130614|40905_1 191 ACLALRGGCYLLLDQPIEALRDCQDAASRDPT 222
                  67899**************************7 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 1.2
                  HHHHHHHHHHTT-HHHHHHHHHH CS
   PF07719.12   4 lynlGlayyklgdyeeAleafek 26 
                  l++ G++ + +g+ e A++ f  
  MMETSP0890-20130614|40905_1 227 LNRCGRLKLSRGQIEAAENEFAS 249
                  66667777777777777766644 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 8.4
                  TT-HHHHHHHHHHHHHH CS
   PF07719.12  14 lgdyeeAleafekAlel 30 
                    + e A+ ++ +A el
  MMETSP0890-20130614|40905_1 281 IEHTEAAKSFMARAFEL 297
                  55677888888888887 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.24
                  HHHHHHHHHHHHH-TTS CS
   PF07719.12  18 eeAleafekAleldPnn 34 
                  e+A++  ++Al l+P++
  MMETSP0890-20130614|40905_1 329 ERARRSADEALLLAPRD 345
                  89*************86 PP

  == domain 6    score: 9.6 bits;  conditional E-value: 0.00075
                  HHHHHHHHTT-HHHHHHHHHHHHHH-TT CS
   PF07719.12   6 nlGlayyklgdyeeAleafekAleldPn 33 
                  ++++++y +g+y  A++ ++ Al+l+ +
  MMETSP0890-20130614|40905_1 483 ERADSAYTRGHYRAAVAMYRDALRLEGD 510
                  589*********************9865 PP

  == domain 7    score: 11.2 bits;  conditional E-value: 0.00023
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAleafekAle 29 
                   ++ nl+ a++ l+++ eA++++ kAl 
  MMETSP0890-20130614|40905_1 518 SVHANLAAAALVLDRPSEAVDHCTKALL 545
                  6899**********************96 PP

  == domain 8    score: 13.6 bits;  conditional E-value: 4e-05
                  HHHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12   5 ynlGlayyklgdyeeAleafekAle 29 
                   ++++a++kl++y eA+++f+  l+
  MMETSP0890-20130614|40905_1 555 LRRARAHAKLDHYTEAIKDFDAFLQ 579
                  689*****************98775 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.5   2.6e-05     0.028      15      73 ..     162     217 ..     158     222 .. 0.89
   2 !   10.8   1.1   0.00031      0.32       4      72 ..     189     250 ..     187     256 .. 0.88
   3 ?    4.5   0.6     0.028        29       4      47 ..     267     310 ..     262     339 .. 0.83
   4 !   14.4   1.8   2.3e-05     0.024      12      73 ..     485     544 ..     480     549 .. 0.89
   5 ?   -0.5   0.1         1   1.1e+03       9      28 ..     555     574 ..     547     582 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.6e-05
    PF13424.1  15 lrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAl 73 
                  l++ g+y +A + +++al   ++++++ +++a +l   + +yl l +  eAl+  ++A 
  MMETSP0890-20130614|40905_1 162 LYESGKYIQAVQALNQAL---SQAPNTWHQYAACLALRGGCYLLLDQPIEALRDCQDAA 217
                  56789******9999999...6789**99***********************9888776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00031
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekA 72 
                  +a++l   +++++ l +  eAl  ++ a          +p + +aln +++l+l +g+ ++A++ +  A
  MMETSP0890-20130614|40905_1 189 YAACLALRGGCYLLLDQPIEALRDCQDAASR-------DPTLYSALNRCGRLKLSRGQIEAAENEFASA 250
                  7999*9*********************9955.......688899******************9877666 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.028
    PF13424.1   4 latilnnlalvlrrlgdydeAlelyekalellrelgddhpdtar 47 
                  +at+ + +a++ r  +  + A ++  +a el++ + +d+  ++ 
  MMETSP0890-20130614|40905_1 267 TATADTGIADCKRYIEHTEAAKSFMARAFELAAAADEDNSSVLL 310
                  57777899***********************8888887766554 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 2.3e-05
    PF13424.1  12 alvlrrlgdydeAlelyekalellrelgd.dhpdtaralnnlanlylalgdydeAleylekAl 73 
                  a++ +  g y  A ++y+ al l    gd +++ +a++  nla + l l + +eA+++  kAl
  MMETSP0890-20130614|40905_1 485 ADSAYTRGHYRAAVAMYRDALRLE---GDdNDALRASVHANLAAAALVLDRPSEAVDHCTKAL 544
                  677788999************775...65268999**************************98 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 1
    PF13424.1   9 nnlalvlrrlgdydeAlely 28 
                   + a ++ +l  y eA++ +
  MMETSP0890-20130614|40905_1 555 LRRARAHAKLDHYTEAIKDF 574
                  45666667777777777655 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.057        60      39      61 ..     162     184 ..     154     194 .. 0.88
   2 ?    3.2   0.2      0.07        73      35      60 ..     196     221 ..     192     245 .. 0.89
   3 !    9.1   0.3   0.00097         1       9      47 ..     326     364 ..     321     370 .. 0.92
   4 ?    1.2   3.5      0.29     3e+02      34      68 ..     483     517 ..     447     522 .. 0.90
   5 !   18.9   0.7   8.4e-07   0.00089       4      60 ..     526     582 ..     523     609 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.057
    PF13371.1  39 laqlgclaaAaedLeaflelcpd 61 
                  l++ g + +A+++L+++l ++p+
  MMETSP0890-20130614|40905_1 162 LYESGKYIQAVQALNQALSQAPN 184
                  7999*****************96 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.07
    PF13371.1  35 rGlllaqlgclaaAaedLeaflelcp 60 
                  rG ++  l+++ +A++d + ++ ++p
  MMETSP0890-20130614|40905_1 196 RGGCYLLLDQPIEALRDCQDAASRDP 221
                  9*****************99998888 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00097
    PF13371.1   9 edferALavverllllaPddpyerRDrGlllaqlgclaa 47 
                   + erA + ++  lllaP dp   R  + +la +  +++
  MMETSP0890-20130614|40905_1 326 AQAERARRSADEALLLAPRDPVAARLKAVALATMKKWSE 364
                  6889******************************99975 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.29
    PF13371.1  34 DrGlllaqlgclaaAaedLeaflelcpdapdaeli 68 
                  +r+   + +g+++aA++ ++ +l l+ d+ da ++
  MMETSP0890-20130614|40905_1 483 ERADSAYTRGHYRAAVAMYRDALRLEGDDNDALRA 517
                  788888999**********************9987 PP

  == domain 5    score: 18.9 bits;  conditional E-value: 8.4e-07
    PF13371.1   4 iylreedferALavverllllaPddpyerRDrGlllaqlgclaaAaedLeaflelcp 60 
                  ++l  +++ +A   +   ll+ ++  + r  r+ ++a+l+++++A++d++afl++  
  MMETSP0890-20130614|40905_1 526 AALVLDRPSEAVDHCTKALLFRSNYMRARLRRARAHAKLDHYTEAIKDFDAFLQSKN 582
                  56667778888888888999999*99***************************6544 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4     1e-06    0.0011       2      62 ..     157     221 ..     156     224 .. 0.90
   2 ?    2.1   0.5      0.28   2.9e+02       5      33 ..     232     263 ..     229     272 .. 0.81
   3 ?    5.8   3.0     0.019        20      11      49 ..     326     364 ..     320     373 .. 0.87
   4 !   17.2   4.8     5e-06    0.0052       2      52 ..     483     538 ..     482     544 .. 0.91
   5 !   12.2   2.9   0.00019       0.2       2      59 ..     522     579 ..     521     585 .. 0.87
   6 ?   -2.6   0.1       8.2   8.6e+03      34      42 ..     688     696 ..     679     721 .. 0.50

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1e-06
    PF13432.1   2 alArallraGdydeAlaaleaalalaPe....aaeallllaeallrlgrldeAaallraalalaP 62 
                   ++ +l+++G+y +A++al++al +aP     +a  l l++ ++l l ++ eA++  + a++++P
  MMETSP0890-20130614|40905_1 157 GNGVELYESGKYIQAVQALNQALSQAPNtwhqYAACLALRGGCYLLLDQPIEALRDCQDAASRDP 221
                  57889*********************776666***************999999999999999998 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.28
    PF13432.1   5 rallraGdydeAlaaleaalala...Peaaea 33 
                  r+ l +G+ ++A++ +  a ++a   P++ +a
  MMETSP0890-20130614|40905_1 232 RLKLSRGQIEAAENEFASAKRAAlqqPFNTDA 263
                  67788999999999999999998888888777 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.019
    PF13432.1  11 GdydeAlaaleaalalaPeaaeallllaeallrlgrlde 49 
                   + ++A++  ++al laP+++ a  l a+al+ ++++ e
  MMETSP0890-20130614|40905_1 326 AQAERARRSADEALLLAPRDPVAARLKAVALATMKKWSE 364
                  5679****************************9887765 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 5e-06
    PF13432.1   2 alArallraGdydeAlaaleaalala.....PeaaeallllaeallrlgrldeAaa 52 
                  ++A++++ +G+y++A+a +++al+l+      + a ++ +la a+l l r+ eA+ 
  MMETSP0890-20130614|40905_1 483 ERADSAYTRGHYRAAVAMYRDALRLEgddndALRASVHANLAAAALVLDRPSEAVD 538
                  689***********************9988777********************985 PP

  == domain 5    score: 12.2 bits;  conditional E-value: 0.00019
    PF13432.1   2 alArallraGdydeAlaal.eaalalaPeaaeallllaeallrlgrldeAaallraala 59 
                   lA a+l + ++ eA+++  +a+l +   + +a+l++a+a+++l ++ eA++ ++a+l+
  MMETSP0890-20130614|40905_1 522 NLAAAALVLDRPSEAVDHCtKALLFRSN-YMRARLRRARAHAKLDHYTEAIKDFDAFLQ 579
                  589999*************777777775.9*********************99999984 PP

  == domain 6    score: -2.6 bits;  conditional E-value: 8.2
    PF13432.1  34 llllaeall 42 
                  + +la  ++
  MMETSP0890-20130614|40905_1 688 YARLALQYH 696
                  222222222 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00031      0.33      11      35 ..     162     186 ..     159     195 .. 0.82
   2 ?    5.5   0.1     0.028        29       3      38 ..     192     227 ..     190     233 .. 0.82
   3 ?    2.4   0.4      0.28   2.9e+02       4      30 ..     227     253 ..     224     271 .. 0.64
   4 ?    3.8   3.4     0.099     1e+02      13      43 ..     324     354 ..     320     355 .. 0.88
   5 !   10.9   2.8   0.00052      0.55       6      40 ..     483     517 ..     461     521 .. 0.92
   6 ?    3.4   0.0      0.13   1.4e+02       3      28 ..     519     544 ..     517     549 .. 0.89
   7 !    9.3   0.1    0.0017       1.8       2      29 ..     552     579 ..     551     586 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00031
    PF13428.1  11 llalGdpdeAiallrralalaPdda 35 
                  l ++G + +A+++l++al++aP+ +
  MMETSP0890-20130614|40905_1 162 LYESGKYIQAVQALNQALSQAPNTW 186
                  5689******************975 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.028
    PF13428.1   3 allalarallalGdpdeAiallrralalaPddaeal 38 
                   l++++  +l l +p eA++ +++a++++P+   al
  MMETSP0890-20130614|40905_1 192 CLALRGGCYLLLDQPIEALRDCQDAASRDPTLYSAL 227
                  57788999**********************865555 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.28
    PF13428.1   4 llalarallalGdpdeAiallrralal 30 
                  l + +r+ l +G+ ++A++ +  a ++
  MMETSP0890-20130614|40905_1 227 LNRCGRLKLSRGQIEAAENEFASAKRA 253
                  556678888899999999988887442 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.099
    PF13428.1  13 alGdpdeAiallrralalaPddaealllLar 43 
                  a  + ++A++ +++al laP d+ a +l a 
  MMETSP0890-20130614|40905_1 324 AKAQAERARRSADEALLLAPRDPVAARLKAV 354
                  55789********************999885 PP

  == domain 5    score: 10.9 bits;  conditional E-value: 0.00052
    PF13428.1   6 alarallalGdpdeAiallrralalaPddaealll 40 
                  ++a+    +G++ +A+a++r+al+l  dd +al++
  MMETSP0890-20130614|40905_1 483 ERADSAYTRGHYRAAVAMYRDALRLEGDDNDALRA 517
                  68999999*******************99998875 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.13
    PF13428.1   3 allalarallalGdpdeAiallrral 28 
                  +++ la+a l l +p eA++++ +al
  MMETSP0890-20130614|40905_1 519 VHANLAAAALVLDRPSEAVDHCTKAL 544
                  56889****************99997 PP

  == domain 7    score: 9.3 bits;  conditional E-value: 0.0017
    PF13428.1   2 eallalarallalGdpdeAiallrrala 29 
                  +a+l++ara++ l ++ eAi+ +++ l+
  MMETSP0890-20130614|40905_1 552 RARLRRARAHAKLDHYTEAIKDFDAFLQ 579
                  799******************9999987 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.068        72      13      32 ..     164     183 ..     159     185 .. 0.85
   2 ?    1.0   0.0      0.37   3.9e+02       4      24 ..     227     247 ..     224     253 .. 0.77
   3 ?    0.2   0.0      0.71   7.4e+02       7      31 ..     274     298 ..     272     301 .. 0.86
   4 ?    0.1   0.0      0.73   7.6e+02      13      32 ..     490     509 ..     483     512 .. 0.79
   5 !    6.5   0.0    0.0067       7.1       2      33 ..     552     583 ..     551     584 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.068
                  HTT-HHHHHHHHH---HHHH CS
    PF13181.1  13 qlGdydkAkeylekalelkp 32 
                  + G+y +A ++l++al+ +p
  MMETSP0890-20130614|40905_1 164 ESGKYIQAVQALNQALSQAP 183
                  6799************9877 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.37
                  TTT---HHHHTT-HHHHHHHH CS
    PF13181.1   4 yynlGdiYrqlGdydkAkeyl 24 
                  +++ G++ ++ G++++A++ +
  MMETSP0890-20130614|40905_1 227 LNRCGRLKLSRGQIEAAENEF 247
                  556688888999999999987 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.71
                  ---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   7 lGdiYrqlGdydkAkeylekalelk 31 
                  ++d+ r    +++Ak+++ +a el+
  MMETSP0890-20130614|40905_1 274 IADCKRYIEHTEAAKSFMARAFELA 298
                  67888888889**********9997 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.73
                  HTT-HHHHHHHHH---HHHH CS
    PF13181.1  13 qlGdydkAkeylekalelkp 32 
                    G y +A + ++ al l  
  MMETSP0890-20130614|40905_1 490 TRGHYRAAVAMYRDALRLEG 509
                  568999**********9976 PP

  == domain 5    score: 6.5 bits;  conditional E-value: 0.0067
                  --TTT---HHHHTT-HHHHHHHHH---HHHH. CS
    PF13181.1   2 kayynlGdiYrqlGdydkAkeylekalelkpr 33 
                  +a++++++++++l  y +A++ +   l+ k++
  MMETSP0890-20130614|40905_1 552 RARLRRARAHAKLDHYTEAIKDFDAFLQSKND 583
                  68899*******************99999987 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0025       2.6       9      33 .]     162     185 ..     158     185 .. 0.87
   2 ?   -2.3   0.0       7.3   7.6e+03       7      31 ..     197     221 ..     193     222 .. 0.79
   3 ?   -2.0   0.2       5.8   6.1e+03      11      25 ..     324     337 ..     313     344 .. 0.67
   4 ?    3.0   0.3      0.15   1.6e+02       7      28 ..     485     506 ..     467     516 .. 0.84
   5 ?    9.0   0.1    0.0017       1.8       2      28 ..     553     579 ..     552     580 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0025
                  HHHHHHHHHHHHHHHHHHHHH-TT- CS
    PF13174.1   9 syyklgdtdeAlealerlikeyPdS 33 
                  +y+ + ++ +A++al++ +++ P++
  MMETSP0890-20130614|40905_1 162 LYESG-KYIQAVQALNQALSQAPNT 185
                  45556.*****************96 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 7.3
                  HHHHHHHHHHHHHHHHHHHHHHH-T CS
    PF13174.1   7 alsyyklgdtdeAlealerlikeyP 31 
                  + +y+ l+++ eAl+  ++  ++ P
  MMETSP0890-20130614|40905_1 197 GGCYLLLDQPIEALRDCQDAASRDP 221
                  6699999999999998888777766 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5.8
                  HHHHHHHHHHHHHHH CS
    PF13174.1  11 yklgdtdeAlealer 25 
                   k+ ++++A++  ++
  MMETSP0890-20130614|40905_1 324 AKA-QAERARRSADE 337
                  344.77777776665 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.15
                  HHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   7 alsyyklgdtdeAlealerlik 28 
                  a s y  g++++A++++++ ++
  MMETSP0890-20130614|40905_1 485 ADSAYTRGHYRAAVAMYRDALR 506
                  5566655699999999998775 PP

  == domain 5    score: 9.0 bits;  conditional E-value: 0.0017
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealerlik 28 
                  A +++a+++ kl++++eA++ ++ +++
  MMETSP0890-20130614|40905_1 553 ARLRRARAHAKLDHYTEAIKDFDAFLQ 579
                  89*********99**********9997 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.72   7.6e+02      12      32 ..     165     183 ..     161     185 .. 0.79
   2 ?   -1.4   0.0       2.3   2.4e+03       1      20 [.     226     245 ..     226     251 .. 0.87
   3 ?    0.1   0.0       0.8   8.4e+02      13      33 ..     419     439 ..     416     441 .. 0.83
   4 ?    6.6   0.2    0.0062       6.6      12      35 ..     491     514 ..     484     515 .. 0.86
   5 ?   -1.0   0.0       1.7   1.8e+03      12      27 ..     530     545 ..     519     549 .. 0.71
   6 ?    2.4   0.0      0.14   1.5e+02       3      23 ..     555     575 ..     553     587 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.72
    PF13176.1  12 lgdyekAielyeraLaltkdp 32 
                  +g+y +A++++ +  al ++p
  MMETSP0890-20130614|40905_1 165 SGKYIQAVQALNQ--ALSQAP 183
                  699**********..666555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.3
    PF13176.1   1 allnLarlysrlgdyekAie 20 
                  al++ +rl  ++g+ e A++
  MMETSP0890-20130614|40905_1 226 ALNRCGRLKLSRGQIEAAEN 245
                  799999999999*9999986 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.8
    PF13176.1  13 gdyekAielyeraLaltkdpl 33 
                  ++ ++++el+ ++L+ +++p+
  MMETSP0890-20130614|40905_1 419 NNQDTLAELFAKSLRQRESPE 439
                  78899*******997777765 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0062
    PF13176.1  12 lgdyekAielyeraLaltkdplda 35 
                  +g y+ A+ +y+ aL+l+ d++da
  MMETSP0890-20130614|40905_1 491 RGHYRAAVAMYRDALRLEGDDNDA 514
                  499**********99999999886 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 1.7
    PF13176.1  12 lgdyekAielyeraLa 27 
                  l + ++A++++++aL 
  MMETSP0890-20130614|40905_1 530 LDRPSEAVDHCTKALL 545
                  667789******9775 PP

  == domain 6    score: 2.4 bits;  conditional E-value: 0.14
    PF13176.1   3 lnLarlysrlgdyekAielye 23 
                  l+ ar++ +l  y +Ai+ + 
  MMETSP0890-20130614|40905_1 555 LRRARAHAKLDHYTEAIKDFD 575
                  5679*************8665 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.6   1.7e+03      13      27 ..     183     197 ..     174     209 .. 0.83
   2 ?    4.4   0.0     0.044        47       2      33 ..     213     244 ..     212     245 .. 0.93
   3 ?    5.1   0.0     0.027        28       4      29 ..     337     362 ..     335     367 .. 0.87
   4 ?    1.8   0.0      0.31   3.2e+02       1      32 [.     500     536 ..     500     538 .. 0.75
   5 ?    0.3   0.0      0.94   9.8e+02       2      33 ..     540     571 ..     539     572 .. 0.85
   6 ?   -1.0   0.0       2.3   2.4e+03      15      30 ..     687     705 ..     686     709 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.6
    PF13431.1  13 adaynnLAelllnnG 27 
                  ++ ++++A +l+ +G
  MMETSP0890-20130614|40905_1 183 PNTWHQYAACLALRG 197
                  578999999998766 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.044
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                  ++ a  +dP+ + a+n+ ++l l++G+ e Ae
  MMETSP0890-20130614|40905_1 213 CQDAASRDPTLYSALNRCGRLKLSRGQIEAAE 244
                  688999***********************998 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.027
    PF13431.1   4 kaleldPnnadaynnLAelllnnGdl 29 
                  +al l+P +++a + +A++l+  +++
  MMETSP0890-20130614|40905_1 337 EALLLAPRDPVAARLKAVALATMKKW 362
                  799*****************987776 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.31
    PF13431.1   1 lyekaleldPnn.....adaynnLAelllnnGdleeA 32 
                  +y+ al+l+ ++     a ++ nLA + l + ++ eA
  MMETSP0890-20130614|40905_1 500 MYRDALRLEGDDndalrASVHANLAAAALVLDRPSEA 536
                  6888999987775677788888999988877776666 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.94
    PF13431.1   2 yekaleldPnnadaynnLAelllnnGdleeAe 33 
                  + kal    n+  a+ ++A++++++  + eA+
  MMETSP0890-20130614|40905_1 540 CTKALLFRSNYMRARLRRARAHAKLDHYTEAI 571
                  78999999999999999999999999999887 PP

  == domain 6    score: -1.0 bits;  conditional E-value: 2.3
    PF13431.1  15 aynnLAelll...nnGdle 30 
                  ay +LA+ ++   n+ +++
  MMETSP0890-20130614|40905_1 687 AYARLALQYHpdrNKSEHA 705
                  7999999999754444444 PP

>> PF07565.8  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.1   5.4e+03      60     129 ..     415     487 ..     414     503 .. 0.64
   2 ?    8.0   2.7    0.0016       1.6      62     146 ..     594     711 ..     587     720 .. 0.62

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 5.1
    PF07565.8  60 ikeedrekvlraLLlkhrhqse..keksvllptkrsladlgkllsekk.kaeqselslqkslelekakesesl 129
                  i+ e+ ++ l  L  k  +q+e  ++ +++ p+   la +  +      ++e+ + +lq++ + ++ake++++
  MMETSP0890-20130614|40905_1 415 INIENNQDTLAELFAKSLRQREspESGKGISPADEALAAIAASEVAPDaARERARIKLQRAAKFRRAKERADS 487
                  5566666667777777777777666677777777777777666555543555556666667666666666554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0016
    PF07565.8  62 eedrekvlraLLlkhrhqsekeksvllptkrsladlgkllsekkkaeqselslqkslelekakeseslekv...................................eeekkkanekllrk 146
                  +++r++v r LL+++ + + ++++++ p + +++   +  ++kk+++++++s+q++ + + +k+s+++++                                    +++k+++ +  + +
  MMETSP0890-20130614|40905_1 594 KKERDDVERDLLRRRTRSKATNHNQQAPCENTYST--RFHFTKKQQHHQNHSSQQQGDPKIHKTSSRISTLpstsgthytvlglgpqaqtndikrayarlalqyhpDRNKSEHATAAMAR 711
                  578************99888777777777766665..34444455555555555555555555555555445566666677777776666666666666666665544555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       857  (0.0626829); expected 273.4 (0.02)
Passed bias filter:                      234  (0.0171153); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.19u 0.40s 00:00:01.59 Elapsed: 00:00:01.02
# Mc/sec: 1750.28
//
Query:       MMETSP0890-20130614|40914_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0064   14.9   0.1     0.0082   14.6   0.1    1.1  1  PF10151.4  Uncharacterised conserved protein (DUF2359)
     0.0065   15.4   0.2     0.0094   14.9   0.1    1.2  1  PF00261.15 Tropomyosin
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.016   14.8   0.0    1.2  1  PF07889.7  Protein of unknown function (DUF1664)
      0.067   11.9   0.1      0.091   11.5   0.1    1.1  1  PF10255.4  RNA polymerase I-associated factor PAF67


Domain annotation for each model (and alignments):
>> PF10151.4  Uncharacterised conserved protein (DUF2359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.4e-06    0.0082     195     270 ..      64     144 ..      51     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.4e-06
    PF10151.4 195 LsqsslLLehllktWetlakkvrkslqetvqs.....fkvtneellskgkaslqdledCdtaCksleekakgsslpwvrll 270
                  L +  + L h lktW+t+a k++k  q+ +       f+v    +l ++  +   + +C+ a + +++++ +   p++r+l
  MMETSP0890-20130614|40914_1  64 LMDRIVALGHQLKTWQTRAAKAHKTQQDKIDDldrklFHVKCGFELMRTLVKEARIDTCQRAIEFMRNRSVSRDSPFIRIL 144
                  566668899********************9753333378888889999999*********************999999997 PP

>> PF00261.15  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.8e-06    0.0094     164     218 ..      54     105 ..      51     117 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-06
   PF00261.15 164 eekaseredkyeekiklLtekLkeaetRaeeAErsvqkLekevdrledeleaeke 218
                  eeka   e+   ++i  L ++Lk  +tRa +A ++    + ++d+l  +l + k 
  MMETSP0890-20130614|40914_1  54 EEKALVMEQALMDRIVALGHQLKTWQTRAAKAHKT---QQDKIDDLDRKLFHVKC 105
                  89******************************965...57899999999998875 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.7e-06     0.016      22      98 ..      45     121 ..      30     134 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.7e-06
    PF07889.7  22 YvwwKGlslsdlmfvtkrnladAvasvtkqlekvseavasakkhLsqridnlddkldeqkeiskeikeevteiredl 98 
                  Y+  K  s+ +   v  + l d +  +++ql++ ++  a+a+k   ++id ld+kl + k   + ++  v+e+r d+
  MMETSP0890-20130614|40914_1  45 YIPVKPHSVEEKALVMEQALMDRIVALGHQLKTWQTRAAKAHKTQQDKIDDLDRKLFHVKCGFELMRTLVKEARIDT 121
                  77777888888889999***************************************999888888888777777665 PP

>> PF10255.4  RNA polymerase I-associated factor PAF67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.7e-05     0.091      49     102 ..      77     130 ..      73     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.7e-05
    PF10255.4  49 ryrarlkkkteeelqelkkndqdvwsvesvlnvLeslvdkseikelleaekkge 102
                   +++r +k ++++ +++++ d + ++v++ ++++  lv++++i ++ +a + ++
  MMETSP0890-20130614|40914_1  77 TWQTRAAKAHKTQQDKIDDLDRKLFHVKCGFELMRTLVKEARIDTCQRAIEFMR 130
                  6999999999999999999999*********************99887766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      337  (0.0246489); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.95
# Mc/sec: 549.90
//
Query:       MMETSP0890-20130614|40916_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-06   25.7   0.0    9.2e-06   25.1   0.0    1.3  1  PF01370.16 NAD dependent epimerase/dehydratase family
     0.0099   15.6   0.0      0.017   14.9   0.0    1.4  1  PF13950.1  UDP-glucose 4-epimerase C-term subunit
  ------ inclusion threshold ------
       0.12   11.1   0.1       0.15   10.8   0.1    1.1  1  PF02719.10 Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> PF01370.16  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     2e-09   9.2e-06     187     236 .]       6      55 ..       2      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2e-09
                  HHHHHH---SEEEE--TT-EEEEEEHHHHHHHHHHHHHSSS.--EEEEE- CS
   PF01370.16 187 lirkilegeevtllgdGtqlRdflyveDvaealllvlehgdvageiyniG 236
                  + r i  g+++t+++ G+ +Rdf y++D+++++++ ++    +  ++n+G
  MMETSP0890-20130614|40916_1   6 FTRAIEIGKPLTVYNRGEMRRDFTYIDDIVNGIIASMQFCSRTATVFNLG 55 
                  67889999*****************************9998888888887 PP

>> PF13950.1  UDP-glucose 4-epimerase C-term subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.7e-06     0.017      20      59 ..      86     125 ..      70     126 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.7e-06
    PF13950.1  20 GDvaecyAdpskAekeLgWkaersleemcrDaWrWqsknP 59 
                    ++e+yAd +kA++ Lg++++  ++  ++   +W ++ P
  MMETSP0890-20130614|40916_1  86 AEIKETYADINKAHSLLGYTPKTPIDVGMKHFIEWYKQEP 125
                  5699**************************9999999998 PP

>> PF02719.10  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.2e-05      0.15     181     253 ..       5      79 ..       3      93 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.2e-05
   PF02719.10 181 lFkkqikeggpvtvTdp.emtRyfmtieeavqLvlqagalak.ggeifvldmGepvkivdlakalielsgleeke 253
                  lF++ i+ g+p+tv ++ em R f  i++ v+ ++ +++ ++ +  +f l   +pv++++  +++ +  g +   
  MMETSP0890-20130614|40916_1   5 LFTRAIEIGKPLTVYNRgEMRRDFTYIDDIVNGIIASMQFCSrTATVFNLGNNKPVELMTFIHTIENQLGAKAAI 79 
                  79************88659*************999999876516679999999****999999998777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       369  (0.0269895); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:01.47
# Mc/sec: 233.12
//
Query:       MMETSP0890-20130614|40929_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-32  111.6   0.1    3.3e-32  111.3   0.0    1.1  1  PF05351.6 GMP-PDE, delta subunit


Domain annotation for each model (and alignments):
>> PF05351.6  GMP-PDE, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   2.4e-36   3.3e-32       3     157 .]      32     172 ..      30     172 .. 0.96

  Alignments for each domain:
  == domain 1    score: 111.3 bits;  conditional E-value: 2.4e-36
    PF05351.6   3 eaniyeidftrfkirdletgkvlfeiakpessaedkkeedpnagrvvryqftpkllklkavgaeveFtvgdkpvknfrlierhyfrdqllksfdFefGFciPsskNtwehiyefpalseelveemiegpyetrsdsfyfvdnkLvmhnkadyaYs 157
                  ++ ++++ ++++++rd+ tg++l+e +++ ++           +++++++++ ++lk+kav++ev+F++  ++++nfrl++++++++q  +++ F+fGF++P s+Ntw++++e++  +e+l+ ++++g  ++ +d+ + ++++ + + +++++Y+
  MMETSP0890-20130614|40929_1  32 DDCMTGFVVNWMNMRDAFTGRILWEQSDDWEN---------MYDKEIEAHVPAEILKCKAVSREVNFSS-RQEMHNFRLEQKILLHGQPFEEWIFTFGFVMPGSTNTWQQVIEAA--DEMLPVDVLSG--NVVIDTRFLDGDTPIANCRVRIFYD 172
                  67788999*****************9999888.........78899***********************.*******************************************87..68*********..***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       374  (0.0273552); expected 273.4 (0.02)
Passed bias filter:                      312  (0.0228204); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.42s 00:00:00.89 Elapsed: 00:00:00.86
# Mc/sec: 482.06
//
Query:       MMETSP0890-20130614|40932_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       103  (0.00753365); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         3  (0.000219427); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.35s 00:00:00.61 Elapsed: 00:00:00.67
# Mc/sec: 189.56
//
Query:       MMETSP0890-20130614|40938_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-11   43.7   0.3    3.8e-11   43.2   0.2    1.3  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.2   2.8e-15   3.8e-11       1     204 [.      90     275 ..      90     326 .. 0.70

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 2.8e-15
                  EEEEECE...................CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHC...HHCTTT-EEEE--------SEEEECTEEEEEEESCGCCEEEEEECTTSS-ECGGCEECCTCEEEEEEEEEECTEEEEEEECH......HHCTSSTTSHHHHHHHHHHHHHHCCHHHHSEEEE---S--BSSGHTTTBHHHHHSHHCBHBCCHHHHCBTT-C- CS
   PF03372.18   1 ltwNvlg............wnarsdrakkldqladllqsedpDvllLQEvdedplsella...tglasglglagdgkvggggggdalgggglallskypldksirrtfqldgkagiavprlssknkgdvpvrfrggktlalvntH......ltpgnrlrqrderallaeidkladdsrgspvilaGDfNsrpdspdkgfrenaadflpgdgfddglrallphlll 204
                  +twN+l+            w+ar ++        ++l ++d+D+ +LQE++  + +e +     ++a++ g +  + +++++g+     +g+a l + +  ++i           +++ ++  +  +++p+       ++++ntH      ++++  +r++++r l++++  l+++     ++++GD+N            n  d++     ++g+r + p++  
  MMETSP0890-20130614|40938_1  90 ATWNLLAppysriqyereqWRARLEA------QQRELEKVDADIAALQEFW--CANEEAVhlwSEWATNKG-YQLIILPRTRGK----EDGCATLIRIKACSQIEAYA----LSYDDWGDRVCLIVKIAPE-------IFVCNTHwtfshnNSWDPIMRKHQARKLADHLLHLRARA----ILILGDLN-----------GNQKDPALVHFAERGFRFYEPEATD 275
                  7******8888888888888888877......888****************..777777746666666666.444444444443....579******55444444444....4444444555555666555.......559*****9999888899999999********9999987....********...........7777777666666666666555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       450  (0.032914); expected 273.4 (0.02)
Passed bias filter:                      359  (0.026258); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.40s 00:00:01.07 Elapsed: 00:00:00.81
# Mc/sec: 1085.76
//
Query:       MMETSP0890-20130614|40935_1  [L=1693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   24.1   0.0    0.00014   22.0   0.0    2.2  1  PF10152.4 Predicted coiled-coil domain-containing protein (DUF2360)


Domain annotation for each model (and alignments):
>> PF10152.4  Predicted coiled-coil domain-containing protein (DUF2360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     1e-08   0.00014      83     147 ..    1580    1644 ..    1565    1645 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1e-08
    PF10152.4   83 aaqeaeaaraetpaeqepealaegrltvrkdp...ryakYfkmlklgVpaeavknKmqaeGldpelld 147 
                   +a+ a+++++++   q+ e+   +  + r++p    ya+Y  ++  gVp  av+ +m+ eGldp +ld
  MMETSP0890-20130614|40935_1 1580 PAPIAPSPPPSDILVQKKEQ---QLSRLRDHPswePYAQYAALIRRGVPLGAVRLRMTTEGLDPAILD 1644
                   34444444444444444333...33445566511157777778888********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1693 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       488  (0.0356934); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.17u 0.35s 00:00:02.52 Elapsed: 00:00:02.02
# Mc/sec: 2008.43
//
Query:       MMETSP0890-20130614|40945_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   25.2   2.2    6.9e-05   23.6   1.5    1.7  1  PF13469.1  Sulfotransferase family
     0.0005   19.4   0.1     0.0012   18.2   0.1    1.6  1  PF00685.22 Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PF13469.1  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.5     1e-08   6.9e-05       4     206 ..     105     287 ..     102     294 .. 0.60

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1e-08
    PF13469.1   4 filGlpRSGttlLaraLlalhpaelgllapqapaladapkglaera.allpllradll.salrrwdalprlldardaallllgalllvaelrallarrarlllllllsalarlvlllkdpahllfpdrfvvllRdPlavlasllrll..las........llrrspyalrlalrkleallrllllgla..larlwlelne..............edlpadpeatlerllal 206
                   ++Gl  SGt lL+ +Ll                 + +  +   ++ +  p  + +++ ++    ++++ +++ ++ +++                         ++sa+    l++ ++  +l+    +v++ dPl++++s++r+   + +        +++++p +    + + + ++r  +  ++  l++lw  ++               edl  +p++t ++l+a+
  MMETSP0890-20130614|40945_1 105 AVAGLFNSGTNLLH-RLL-----------------RVNCVMPMACPqDIKPKAMKAMMdRHECIGYPFQVPWGKHNPENY-------------------------RRSAHVVPQLAHFNRSEILP----IVVIKDPLSWMRSMCRVPytV-HfprqgkccPVPLNPKQFNSMNNTIFVRWRNNHIIHYssLLDLWNTWYSdywysheprvfvryEDLLFQPKRTTQSLCAC 287
                  689***********.777.................444333333330344444444443333333344444444444443.........................23333333344466666688....********9999988888542.144455555444444444444444444444444444488777777777788889999999999*********99999984 PP

>> PF00685.22  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.7e-07    0.0012     101     196 ..     181     291 ..     102     305 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.7e-07
                  HTT-EEEEEE--HHHHHHHHHHHHHHCT................CSTTT---HHHHHHHHH.HHHCCH-HHHHHHHHHH...TCCCCCEEEEEHHHHHH-HHHHHHHHHHHTT-- CS
   PF00685.22 101 dknlKiiylvRnpkdvavSryhfsrslk................llkepetpfeeffdlflegrvvcgsyfdhveewlk...lrkkgnvlflrYEdlkkdpakeikeiaeFlGip 196
                  ++ +  i+++ +p   + S+      ++                 +++++t    f+ + +++++ ++s +d   +w++   ++++++v f+rYEdl  +p+++++ ++   G +
  MMETSP0890-20130614|40945_1 181 RSEILPIVVIKDPLSWMRSMCRVPYTVHfprqgkccpvplnpkqFNSMNNT---IFVRWRNNHIIHYSSLLDLWNTWYSdywYSHEPRV-FVRYEDLLFQPKRTTQSLCACVGGK 291
                  555555666677776666666666555566666677665555544445555...69************************766666665.9***************999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       224  (0.0163839); expected 273.4 (0.02)
Passed bias filter:                      184  (0.0134582); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.81
# Mc/sec: 1275.10
//
Query:       MMETSP0890-20130614|40949_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-20   70.0  16.9    2.2e-05   23.7   0.1    7.8  7  PF01344.20 Kelch motif
    1.3e-18   66.3  10.4      9e-05   22.0   0.0    6.8  7  PF13418.1  Galactose oxidase, central domain
    5.4e-16   57.8  15.0    0.00011   22.1   0.0    7.4  7  PF13964.1  Kelch motif
    2.5e-14   52.7  14.6     0.0047   16.7   0.3    6.8  6  PF13854.1  Kelch motif
      2e-10   40.3  17.0      0.022   14.8   0.0    7.1  7  PF13415.1  Galactose oxidase, central domain
      2e-08   33.8  13.4      0.001   18.9   0.1    6.5  5  PF07646.10 Kelch motif
  ------ inclusion threshold ------
      0.092   11.5   0.0       0.16   10.8   0.0    1.3  1  PF02163.17 Peptidase family M50
       0.13   12.4   5.7         13    6.0   0.0    3.8  4  PF13570.1  YWTD domain


Domain annotation for each model (and alignments):
>> PF01344.20  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.22   3.8e+02      39      47 .]       6      14 ..       3      14 .. 0.89
   2 ?    2.7   0.4     0.047        80      14      23 ..      30      46 ..      26      75 .. 0.60
   3 !   23.7   0.1   1.3e-08   2.2e-05       1      43 [.      78     121 ..      78     122 .. 0.97
   4 !   10.2   0.0   0.00022      0.37       1      26 [.     129     154 ..     129     163 .. 0.86
   5 !   10.1   0.0   0.00022      0.38       1      46 [.     177     227 ..     177     228 .. 0.90
   6 !   22.1   0.0   4.3e-08   7.3e-05       1      45 [.     230     279 ..     230     281 .. 0.94
   7 !    4.9   0.0    0.0098        17      10      24 ..     292     309 ..     285     327 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.22
                 EEEEECCSS CS
   PF01344.20 39 tWeklpsmp 47
                 +We ++smp
  MMETSP0890-20130614|40949_1  6 SWESVASMP 14
                 7*******8 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.047
                 EEEE---BS.......T CS
   PF01344.20 14 iYviGGrdg.......d 23
                 + ++GG+++       +
  MMETSP0890-20130614|40949_1 30 VIIFGGCSSaqlscdfY 46
                 78999999844433330 PP

  == domain 3    score: 23.7 bits;  conditional E-value: 1.3e-08
                  SSSCEEEEEETTEEEEE---BS.TTS-TTEEEEEETTTTEEEEE CS
   PF01344.20   1 arssagvvvldgkiYviGGrdg.dtnalnsVerYDpvtntWekl 43 
                  +r+ ++++++dg+++v GGr+  d ++l+ V +Y++  n+W+ l
  MMETSP0890-20130614|40949_1  78 PRYRHAAAYYDGELFVGGGRSVdDDSVLSQVDVYNLFANSWSSL 121
                  89***************************************976 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00022
                  SSSCEEEEEETTEEEEE---BSTTS- CS
   PF01344.20   1 arssagvvvldgkiYviGGrdgdtna 26 
                  +rs  ++ +++g+++ +GG+d d++a
  MMETSP0890-20130614|40949_1 129 PRSDLAAIAFNGYLFFVGGYDADYTA 154
                  799******************95544 PP

  == domain 5    score: 10.1 bits;  conditional E-value: 0.00022
                  SSSCEEEEEETTEEEEE---BS..TTS-TTEEEEEETT...TTEEEEECCS CS
   PF01344.20   1 arssagvvvldgkiYviGGrdg..dtnalnsVerYDpv...tntWeklpsm 46 
                  ar  +g v  d   Y++GG++     ++l+sVe+++ +   + +W  +ps+
  MMETSP0890-20130614|40949_1 177 ARGDFGLVHDDTTAYAVGGWSHenWCSPLDSVEILSITaypDSQWNNAPSL 227
                  57778889999999********98899******************999997 PP

  == domain 6    score: 22.1 bits;  conditional E-value: 4.3e-08
                  SSSCEEEEEETTEEEEE---BS.....TTS-TTEEEEEETTTTEEEEECC CS
   PF01344.20   1 arssagvvvldgkiYviGGrdg.....dtnalnsVerYDpvtntWeklps 45 
                  +r   g++ +dg+ Yv GG  +      ++++++Ve++D +  +W ++++
  MMETSP0890-20130614|40949_1 230 PRGDKGAALVDGRFYVAGGEHNnncatGSEPVDDVEVLDSEQGQWIPVAD 279
                  577789*****************************************997 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.0098
                  ETTEEEEE---BS...TT CS
   PF01344.20  10 ldgkiYviGGrdg...dt 24 
                  l+ ++ v+GG+++   + 
  MMETSP0890-20130614|40949_1 292 LGPYLLVFGGQSSrqeSD 309
                  799*********966633 PP

>> PF13418.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         2   3.4e+03      40      48 ..       6      14 ..       4      14 .. 0.90
   2 !   10.1   0.0   0.00027      0.46       5      46 ..      20      74 ..      16      75 .. 0.88
   3 !   21.5   0.1   7.7e-08   0.00013       1      44 [.      78     121 ..      78     124 .. 0.94
   4 !    6.7   0.0    0.0032       5.5       1      25 [.     129     152 ..     129     158 .. 0.89
   5 ?    5.0   0.0      0.01        18       1      36 [.     177     213 ..     177     228 .. 0.83
   6 !   22.0   0.0   5.3e-08     9e-05       6      48 ..     235     281 ..     230     282 .. 0.90
   7 ?    1.2   0.0      0.17   2.8e+02      14      23 ..     295     304 ..     287     319 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2
    PF13418.1 40 tWtrlpslP 48
                 +W+ ++s+P
  MMETSP0890-20130614|40949_1  6 SWESVASMP 14
                 7*******9 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00027
    PF13418.1  5 hsavavpdgrlylfGGenedg.............gplnDlyvfDlstntWtrlps 46
                  sa+ ++   +++fGG+++                +++  + ++  +n+W++l+s
  MMETSP0890-20130614|40949_1 20 MSATKIGEYQVIIFGGCSSAQlscdfydgcsycpASSDRSFEYNAIDNRWRELAS 74
                 6788888778*********66999999999999999999999********99987 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 7.7e-08
    PF13418.1   1 pRaghsavavpdgrlylfGGenedg.gplnDlyvfDlstntWtrl 44 
                  pR+ h+a +  dg l++ GG++ d+ ++l+ ++v++l  n+W+ l
  MMETSP0890-20130614|40949_1  78 PRYRHAAAYY-DGELFVGGGRSVDDdSVLSQVDVYNLFANSWSSL 121
                  89*******7.8************88****************976 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0032
    PF13418.1   1 pRaghsavavpdgrlylfGGenedg 25 
                  pR + +a+a  +g+l+++GG++ d 
  MMETSP0890-20130614|40949_1 129 PRSDLAAIAF-NGYLFFVGGYDADY 152
                  8999999999.8**********986 PP

  == domain 5    score: 5.0 bits;  conditional E-value: 0.01
    PF13418.1   1 pRaghsavavpdgrlylfGGenedg..gplnDlyvfDl 36 
                  +R+++++v + d + y +GG + +   +pl+ + ++++
  MMETSP0890-20130614|40949_1 177 ARGDFGLVHD-DTTAYAVGGWSHENwcSPLDSVEILSI 213
                  79*******9.79*******998888888888888876 PP

  == domain 6    score: 22.0 bits;  conditional E-value: 5.3e-08
    PF13418.1   6 savavpdgrlylfGGenedg.....gplnDlyvfDlstntWtrlpslP 48 
                  +a  v dgr+y+ GGe ++       p +D+ v+D ++++W ++++ P
  MMETSP0890-20130614|40949_1 235 GAALV-DGRFYVAGGEHNNNcatgsEPVDDVEVLDSEQGQWIPVADVP 281
                  55566.8*************************************9999 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.17
    PF13418.1  14 rlylfGGene 23 
                  +l++fGG+++
  MMETSP0890-20130614|40949_1 295 YLLVFGGQSS 304
                  689****997 PP

>> PF13964.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.23   3.8e+02      39      49 ..       6      16 ..       5      17 .. 0.89
   2 ?    4.5   0.2     0.023        38      31      50 .]      60      79 ..      18      79 .. 0.77
   3 !   22.0   0.1   6.7e-08   0.00011       1      44 [.      78     122 ..      78     130 .. 0.88
   4 !    9.7   0.2   0.00051      0.87       1      28 [.     129     156 ..     129     166 .. 0.79
   5 ?    2.6   0.0     0.091   1.6e+02       5      24 ..     181     202 ..     177     231 .. 0.72
   6 !   22.1   0.0   6.2e-08   0.00011       7      49 ..     236     283 ..     233     286 .. 0.95
   7 ?    0.6   0.0      0.38   6.4e+02      10      21 ..     292     303 ..     285     311 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.23
    PF13964.1 39 sWeqlpplpvp 49
                 sWe ++++p++
  MMETSP0890-20130614|40949_1  6 SWESVASMPIA 16
                 8********86 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.023
    PF13964.1 31 lvydpetksWeqlpplpvpr 50
                 + y+ ++++W++l++ + pr
  MMETSP0890-20130614|40949_1 60 FEYNAIDNRWRELASSIRPR 79
                 55999********9988887 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 6.7e-08
    PF13964.1   1 praghsavsvggkiyifGGytns.gkylndvlvydpetksWeqlp 44 
                  pr+ h+a++++g +++ GG++ + ++ l++v vy++  +sW+ l 
  MMETSP0890-20130614|40949_1  78 PRYRHAAAYYDGELFVGGGRSVDdDSVLSQVDVYNLFANSWSSLD 122
                  6889****************9999******************975 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.00051
    PF13964.1   1 praghsavsvggkiyifGGytnsgkyln 28 
                  pr   +a++++g+++++GGy++++++++
  MMETSP0890-20130614|40949_1 129 PRSDLAAIAFNGYLFFVGGYDADYTAQS 156
                  5778899*************99755555 PP

  == domain 5    score: 2.6 bits;  conditional E-value: 0.091
    PF13964.1   5 hsavsvggkiyifGGytns..g 24 
                  + +v ++ + y++GG ++    
  MMETSP0890-20130614|40949_1 181 FGLVHDDTTAYAVGGWSHEnwC 202
                  77899999*******9985443 PP

  == domain 6    score: 22.1 bits;  conditional E-value: 6.2e-08
    PF13964.1   7 avsvggkiyifGGytns.....gkylndvlvydpetksWeqlpplpvp 49 
                  a++v+g++y++GG  n      +++ +dv+v+d e + W ++++ p p
  MMETSP0890-20130614|40949_1 236 AALVDGRFYVAGGEHNNncatgSEPVDDVEVLDSEQGQWIPVADVPEP 283
                  789************999**************************9987 PP

  == domain 7    score: 0.6 bits;  conditional E-value: 0.38
    PF13964.1  10 vggkiyifGGyt 21 
                   g ++ +fGG++
  MMETSP0890-20130614|40949_1 292 LGPYLLVFGGQS 303
                  5679******97 PP

>> PF13854.1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.067   1.1e+02       1      24 [.      13      37 ..      13      46 .. 0.76
   2 !   16.7   0.3   2.7e-06    0.0047       4      38 ..      78     112 ..      77     115 .. 0.86
   3 !   11.5   0.1   0.00012       0.2       3      27 ..     128     153 ..     128     159 .. 0.82
   4 !    6.8   0.0    0.0035         6       4      39 ..     177     213 ..     176     215 .. 0.82
   5 !    8.5   0.0    0.0011       1.8       9      38 ..     235     268 ..     229     272 .. 0.82
   6 !   10.8   0.1   0.00019      0.33       2      40 ..     281     331 ..     280     332 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.067
    PF13854.1  1 lPppRarhcavvvs.gniylyGGks 24
                 +P +++  +a + + ++++++GG s
  MMETSP0890-20130614|40949_1 13 MPIALSDMSATKIGeYQVIIFGGCS 37
                 57788889999997478******66 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 2.7e-06
    PF13854.1   4 pRarhcavvvsgniylyGGksgnddsvsddvyvLs 38 
                  pR+rh+a++++g++++ GG+s  ddsv+++v v++
  MMETSP0890-20130614|40949_1  78 PRYRHAAAYYDGELFVGGGRSVDDDSVLSQVDVYN 112
                  9********************87888888776655 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00012
    PF13854.1   3 ppRarhcavvvsgniylyGGksg.nd 27 
                  +pR+  +a++ +g++++ GG+++  +
  MMETSP0890-20130614|40949_1 128 VPRSDLAAIAFNGYLFFVGGYDAdYT 153
                  599*******************7533 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0035
    PF13854.1   4 pRarhcavvvsgniylyGGksg.nddsvsddvyvLsl 39 
                  +R  +  v +++  y  GG+s+ n  s++d v +Ls+
  MMETSP0890-20130614|40949_1 177 ARGDFGLVHDDTTAYAVGGWSHeNWCSPLDSVEILSI 213
                  79999****************7665667777777776 PP

  == domain 5    score: 8.5 bits;  conditional E-value: 0.0011
    PF13854.1   9 cavvvsgniylyGGks....gnddsvsddvyvLs 38 
                   a+ v+g +y+ GG      ++++++ ddv vL+
  MMETSP0890-20130614|40949_1 235 GAALVDGRFYVAGGEHnnncATGSEPVDDVEVLD 268
                  57899***********6655378999*****998 PP

  == domain 6    score: 10.8 bits;  conditional E-value: 0.00019
    PF13854.1   2 PppRarhcavvvsgniylyGGksg........nddsvs....ddvyvLslp 40 
                  P p +r  a++++ +++++GG s+        +d +++    d+vy+L+l 
  MMETSP0890-20130614|40949_1 281 PEPKFRTVAIGLGPYLLVFGGQSSrqesdacpSDVEYCypvtDHVYRLTLT 331
                  667778889999***********7633344544555534444777777765 PP

>> PF13415.1  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.82   1.4e+03      29      42 ..       5      18 ..       3      24 .. 0.79
   2 !   13.6   0.4     3e-05     0.051       4      49 .]      30      87 ..      26      87 .. 0.79
   3 !   10.5   0.0   0.00028      0.48       2      34 ..      89     121 ..      88     137 .. 0.85
   4 ?    3.3   0.1     0.051        88       1      28 [.     139     165 ..     139     171 .. 0.79
   5 ?   -0.2   0.1      0.66   1.1e+03       3      40 ..     189     230 ..     187     233 .. 0.70
   6 !   14.8   0.0   1.3e-05     0.022       2      40 ..     241     283 ..     240     285 .. 0.90
   7 ?    3.2   0.0     0.056        96       2      17 ..     294     308 ..     293     335 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.82
    PF13415.1 29 ntweeigslPppRa 42
                  +we ++s+P + +
  MMETSP0890-20130614|40949_1  5 SSWESVASMPIALS 18
                 58*******98765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3e-05
    PF13415.1  4 lyvfGGlgddgqtrl.............ndvyvldldtntweeigslPppRaghtatai 49
                 +++fGG+    q  +              + ++++  +n w+e++s   pR+ h+a+++
  MMETSP0890-20130614|40949_1 30 VIIFGGCSS-AQLSCdfydgcsycpassDRSFEYNAIDNRWRELASSIRPRYRHAAAYY 87
                 688999883.33333555666666888889999***********************997 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00028
    PF13415.1   2 delyvfGGlgddgqtrlndvyvldldtntweei 34 
                  +el+v GG+  d    l+ v+v++l +n+w  +
  MMETSP0890-20130614|40949_1  89 GELFVGGGRSVDDDSVLSQVDVYNLFANSWSSL 121
                  78*********99************88999876 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.051
    PF13415.1   1 gdelyvfGGlgddgqtrlndvyvldldt 28 
                  +++l+ +GG++ +  t+ ++   ++ld+
  MMETSP0890-20130614|40949_1 139 NGYLFFVGGYD-ADYTAQSSSIGINLDS 165
                  589********.4577778777777776 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.66
    PF13415.1   3 elyvfGGlgddg.qtrlndvyvldldtn...tweeigslPpp 40 
                  ++y +GG+  ++   +l +v +l++++    +w   +sl  p
  MMETSP0890-20130614|40949_1 189 TAYAVGGWSHENwCSPLDSVEILSITAYpdsQWNNAPSLAVP 230
                  678899999766788888888888855555577776666555 PP

  == domain 6    score: 14.8 bits;  conditional E-value: 1.3e-05
    PF13415.1   2 delyvfGGlgd....dgqtrlndvyvldldtntweeigslPpp 40 
                  +++yv GG+      +g ++  dv vld + ++w ++++ P p
  MMETSP0890-20130614|40949_1 241 GRFYVAGGEHNnncaTGSEPVDDVEVLDSEQGQWIPVADVPEP 283
                  78******9987788888888******************9987 PP

  == domain 7    score: 3.2 bits;  conditional E-value: 0.056
    PF13415.1   2 delyvfGGlgddgqtr 17 
                   +l+vfGG+  ++q+ 
  MMETSP0890-20130614|40949_1 294 PYLLVFGGQS-SRQES 308
                  589*****99.55543 PP

>> PF07646.10  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.22   3.7e+02      28      45 ..      55      72 ..      18      75 .. 0.68
   2 !   18.9   0.1   5.9e-07     0.001       1      44 [.      78     120 ..      78     123 .. 0.83
   3 !    7.2   0.4    0.0029         5       1      21 [.     129     152 ..     129     208 .. 0.81
   4 !    9.3   0.0   0.00065       1.1       7      48 ..     236     280 ..     230     281 .. 0.76
   5 ?   -2.1   0.0       2.5   4.3e+03      11      19 ..     293     301 ..     286     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.22
   PF07646.10 28 sssdlnvldpeknvWeel 45
                 ss++   ++  +n+W+el
  MMETSP0890-20130614|40949_1 55 SSDRSFEYNAIDNRWREL 72
                 555666677777777776 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 5.9e-07
   PF07646.10   1 pryghsavvpggkiyvvGGahtdngllsssdlnvldpeknvWee 44 
                  pry+h+a++++g ++v GG+ + ++++++s + v+++  n+W+ 
  MMETSP0890-20130614|40949_1  78 PRYRHAAAYYDGELFVGGGR-SVDDDSVLSQVDVYNLFANSWSS 120
                  8*******************.66666666666669988888875 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0029
   PF07646.10   1 pryghsavvpggkiyvvGGa...h 21 
                  pr+  +a   +g ++ vGG+   +
  MMETSP0890-20130614|40949_1 129 PRSDLAAIAFNGYLFFVGGYdadY 152
                  688999999***********5441 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00065
   PF07646.10   7 avvpggkiyvvGGahtdngllss.....sdlnvldpeknvWeeltpl 48 
                  a+ ++g+ yv GG   +n+++++     +d+ vld e  +W ++ ++
  MMETSP0890-20130614|40949_1 236 AALVDGRFYVAGGE--HNNNCATgsepvDDVEVLDSEQGQWIPVADV 280
                  5779**********..9998886333335788888888888888766 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 2.5
   PF07646.10  11 ggkiyvvGG 19 
                  g  ++v+GG
  MMETSP0890-20130614|40949_1 293 GPYLLVFGG 301
                  557899999 PP

>> PF02163.17  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.2e-05      0.16      49     112 ..     285     377 ..     274     401 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.2e-05
                  XXXXXXXXXXXXXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF02163.17  49 ytirliplGgyvriaGeeree.............................vfvapierqfkskspwkrililaAGplaNfllavllfalllll 112
                  ++  +i lG y+ ++G +++                              ++ ++++ + +++ p +ri+ ++ G + +++la+ll++l+ll 
  MMETSP0890-20130614|40949_1 285 FRTVAIGLGPYLLVFGGQSSRqesdacpsdveycypvtdhvyrltlttvdDDHNHDDCDHNHNRPLSRIAFFFLGLASGLVLALLLYLLVLLC 377
                  566788899999999987777889999999999999999999999999888888889999999************************999876 PP

>> PF13570.1  YWTD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.011        19      12      30 ..      79     101 ..      68     112 .. 0.73
   2 ?    1.0   0.1      0.29     5e+02      16      31 ..     135     150 ..     117     154 .. 0.71
   3 ?   -2.1   0.0       2.7   4.6e+03      16      29 ..     182     195 ..     171     199 .. 0.75
   4 ?    6.0   0.0    0.0076        13      15      31 ..     234     250 ..     218     256 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.011
    PF13570.1  12 pvnsspavdgglvyvgtg....d 30 
                  +++  +a+ +g ++vg+g    d
  MMETSP0890-20130614|40949_1  79 RYRHAAAYYDGELFVGGGrsvdD 101
                  5555679**********977763 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.29
    PF13570.1  16 spavdgglvyvgtgdG 31 
                   +a+ g l +vg++d 
  MMETSP0890-20130614|40949_1 135 AIAFNGYLFFVGGYDA 150
                  3477788899999986 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 2.7
    PF13570.1  16 spavdgglvyvgtg 29 
                  +++ d+ ++y+++g
  MMETSP0890-20130614|40949_1 182 GLVHDDTTAYAVGG 195
                  56778888888876 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.0076
    PF13570.1  15 sspavdgglvyvgtgdG 31 
                   ++a+++g+ yv++g +
  MMETSP0890-20130614|40949_1 234 KGAALVDGRFYVAGGEH 250
                  578***********944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       518  (0.0378877); expected 273.4 (0.02)
Passed bias filter:                      432  (0.0315974); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.41s 00:00:01.21 Elapsed: 00:00:00.77
# Mc/sec: 1325.78
//
Query:       MMETSP0890-20130614|40951_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-15   55.3   8.1    7.8e-15   55.0   5.6    1.1  1  PF09799.4 Predicted membrane protein
  ------ inclusion threshold ------
      0.095   11.9   0.0       0.14   11.3   0.0    1.2  1  PF12187.3 Viral/Archaeal nuclease


Domain annotation for each model (and alignments):
>> PF09799.4  Predicted membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   5.6   1.1e-18   7.8e-15       2     108 ..       2     110 ..       1     111 [. 0.89

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.1e-18
    PF09799.4   2 lLylnsfysalwfvsellllilKgillklpsaylvlevv.llvllllvevvRLylGyrGNlaekvpalalfvvltlliqlpli.yflllqtyvlrlelilsaillallv 108
                  l+y + fys+l+ ++  + ++ K ++  + +a l l+++ + +l+ + e+ R++lGy GN +e+vp + +f++lt+++q+ ++ +f +lq ++   +++  +i+l++l+
  MMETSP0890-20130614|40951_1   2 LMYYQGFYSLLYLCISGGCMMNKNANYAYGNAILELLTIpVFLLWSITEFARVFLGYFGNIKERVPMISAFLLLTIFPQIVAVaFFTFLQDPIFPFDIAGGIIMLIFLI 110
                  89***************************9999866555167789*******************************9999876155677788888************86 PP

>> PF12187.3  Viral/Archaeal nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.1e-05      0.14      84     154 ..       6      76 ..       2      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.1e-05
    PF12187.3  84 deyypllyidvtGssfteeqskerygesiyailsikvevaekldvlGrvifihyadredklklisalriln 154
                  + +y lly+ + G  + +++++  yg++i+ +l+i v +        rv++  + +  +++ +isa  +l+
  MMETSP0890-20130614|40951_1   6 QGFYSLLYLCISGGCMMNKNANYAYGNAILELLTIPVFLLWSITEFARVFLGYFGNIKERVPMISAFLLLT 76 
                  579***********************************999999999999999999999999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       839  (0.0613663); expected 273.4 (0.02)
Passed bias filter:                      469  (0.0343037); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.40s 00:00:00.97 Elapsed: 00:00:00.71
# Mc/sec: 813.41
//
Query:       MMETSP0890-20130614|40957_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       271  (0.0198215); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.41s 00:00:00.75 Elapsed: 00:00:00.52
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|40963_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   66.2   0.2    3.5e-18   65.4   0.1    1.4  1  PF00722.16 Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> PF00722.16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.1   2.6e-22   3.5e-18      35     165 ..     120     257 ..      95     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 2.6e-22
                  EEEEEEESSEEEE-EEEEEEE-------EEEEEE...E-TTT.----EEEEE.EEE---TTEEEEEEE--------.--EEEE-SS-TTTS-EEEEEEEETTEEEEEETTEEEEEEECSHHH.GGGS..-EECEEEEEEE CS
   PF00722.16  35 tsgglkskksylyGkvearikaakgaGvvtafwl...ssede.wdqhdEIDi.EflGndtgkvqtnvygngkggrt.gekrlelwfdptedfHtYaieWtpdkitwyVDgepvrtvkkkeae.eaky..Pqytpmnlavs 165
                  +s++l s+ks++yG++e+ +k+a+g+ + +++w+   +s+ + w++++EIDi E  G +   + + ++++ +g+r+   k+ + + +  ++fHt+++ W++d +  y+D  + r v+ ++++ e+++   +y +  +a++
  MMETSP0890-20130614|40963_1 120 QSARLMSRKSFTYGRFEIVAKLAQGDWLHPSIWMlpeQSAYGmWPASGEIDIvEGNGRT--LAFSGTHWSKNGDREdLGKSKSIQLQNYDQFHTFGLYWDQDILYTYIDHDANRIVQLDNVKeETPFdhRFYFIFDVAAG 257
                  599*******************************986688889***********88873..444555556666665555555666789************************9999999998556776677777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.70
# Mc/sec: 1297.46
//
Query:       MMETSP0890-20130614|40967_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-05   21.0   0.0     0.0001   20.8   0.0    1.1  1  PF05889.8 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
  ------ inclusion threshold ------
        1.4    8.4   5.1        7.1    6.0   0.1    2.1  2  PF04156.9 IncA protein


Domain annotation for each model (and alignments):
>> PF05889.8  Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.5e-08    0.0001     334     387 ..       2      82 ..       1      84 [. 0.89

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.5e-08
    PF05889.8 334 LfsrkvtGargvrasdsklT...........................shlkeyhsrYlkiasaiGlkdedvdkvlerldei 387
                  Lf+r  +G r+v++s ++                             +    y+  Y+++a a+G+++ ++d++++rld++
  MMETSP0890-20130614|40967_1   2 LFTRCCSGCRVVVPSIPTDSfqedddpgptpilpsttvagitftafgASSSTYPLPYFTAAVALGVQQAELDEFIKRLDKT 82 
                  8999999999999887766677799999999999999999999999988899**************************987 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.0    0.0036        24      20      50 ..      39      67 ..      37      68 .. 0.79
   2 ?    6.0   0.1     0.001       7.1      80     116 ..      69     105 ..      67     114 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0036
    PF04156.9 20 asGiallvlfasslgvlisallgivliAlgv 50
                 ++Gi++ +++a   +++++   +++++Algv
  MMETSP0890-20130614|40967_1 39 VAGITFTAFGA--SSSTYPLPYFTAAVALGV 67
                 45666666665..67**************97 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.001
    PF04156.9  80 qeelsesesqlseleeeleqleerlaeleseledlee 116
                  q+el e +++l++   ++ +l+ r+++l+s++e+ ee
  MMETSP0890-20130614|40967_1  69 QAELDEFIKRLDKTFAYVRKLQARSSSLTSHFENNEE 105
                  5688888888888888888899999999999887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       601  (0.0439585); expected 273.4 (0.02)
Passed bias filter:                      529  (0.0386922); expected 273.4 (0.02)
Passed Vit filter:                        50  (0.00365711); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.38s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 402.72
//
Query:       MMETSP0890-20130614|40970_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.38s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 359.45
//
Query:       MMETSP0890-20130614|40979_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   50.7   0.1    2.8e-12   46.4   0.1    2.1  1  PF02230.11 Phospholipase/Carboxylesterase
    1.7e-06   27.7   0.0    2.3e-06   27.3   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
    0.00012   21.9   0.3      0.051   13.3   0.1    2.4  2  PF12697.2  Alpha/beta hydrolase family
      0.004   16.6   0.0     0.0058   16.1   0.0    1.4  1  PF07819.8  PGAP1-like protein
     0.0068   15.0   0.1     0.0097   14.5   0.1    1.2  1  PF00135.23 Carboxylesterase family


Domain annotation for each model (and alignments):
>> PF02230.11  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.1     1e-15   2.8e-12       9     211 ..      49     268 ..      43     272 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 1e-15
   PF02230.11   9 pakpaqavvIflHGlGdsg.hllaeaakleaallntkfifphgpeepvtlnggmrmpaWfdlke..lspnk..............kedeagikksaekleelidaelkkg.ipssriiigGFSqGaalalylaltspk..plggivafsgalplnqkleqsatkva.kipilqlHgeeDevvplalgkaakellktllnkvelksyeglgHsilseelqdikkf 211
                  p+++ + ++I+lH  G  + +  ++  +   + ++tk+ +p +p  p+++n+      Wf l+e  ++++                   +gi++ a  + ++++ e+++   ++s+i+++G + G+++a y+ +t+ +   l+gi+ +s+ ++l++ l+ + ++   +++  +  g+eD++ p++l+++   l ++ + +  ++ +++++H  +  el+ + + 
  MMETSP0890-20130614|40979_1  49 PNEQSALTLIWLHANGEVPfEYSSLFDRALQNAPRTKLLIP-APHAPQNQNNDDT-TCWFTLDEseWLEKYlhggeqsysytqadLALLKGIEAQADWIAAIVEREIEANgGDASKIVLAGAGHGGVVASYTGFTKLTstSLAGIITLSSPCILPNLLKAKTKSFLaNTSLTCFAGTEDNIFPSHLQRT--HLASATIPNAAFVLIPNGQHTADALELKTMTSA 268
                  66777789999999999999666666666678899999988.6777777777774.7899887522333323222211221101122347899999999999999998544************************977679**************9999877776679*****************9875..344455558999999999999999999988765 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   8.5e-10   2.3e-06       3     141 ..      58     255 ..      56     256 .. 0.62

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 8.5e-10
    PF12695.2   3 vlvhGaggdssayeplae.alakr.gfavvav..dlpghgasegaa.....aakrvl.......................................aadlldleriilvGhSlGGgvalelag...rddrvkglvllap...fpdgedlakltl......pvllihGtrDgvvppeeaeklakalp.gdaelvviegasH 141
                  + +h +g  + +y++l++ al+++     +++    p ++++++++     + +++l                                       +a   d+++i+l+G   GG va+++        +++g++ l++    p+   l+++t+       +  + Gt+D++ p + +++ ++ +  ++a +v+i+++ H
  MMETSP0890-20130614|40979_1  58 IWLHANGEVPFEYSSLFDrALQNApRTKLLIPapHAPQNQNNDDTTcwftlDESEWLekylhggeqsysytqadlallkgieaqadwiaaivereiEANGGDASKIVLAGAGHGGVVASYTGFtklTSTSLAGIITLSSpciLPN--LLKAKTKsflantSLTCFAGTEDNIFPSHLQRTHLASATiPNAAFVLIPNGQH 255
                  566666666666666665233333223333332222222223333344444222222444455555555555555566666666666667776665444449******************7766554489********9643244..33333334466669999**********9999988888888************* PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.9e-05     0.051      48     106 ..     137     203 ..      57     216 .. 0.75
   2 !    6.5   0.0    0.0022       6.1     179     216 ..     217     256 ..     211     259 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
                  -HHHHHHHHHHHHHH--.......--EEEE--------HHH..HHH----.EEEEEEE------STT CS
    PF12697.2  48 tledlaadlaalldalgl......rpvvlvGHSlGgavala..aaarrpdlvrglvlidppgplpas 106
                   +e +a+ +aa++++          ++vl G  +Gg+va +  + ++ +  ++g++ +++p+ lp+ 
  MMETSP0890-20130614|40979_1 137 GIEAQADWIAAIVEREIEanggdaSKIVLAGAGHGGVVASYtgFTKLTSTSLAGIITLSSPCILPNL 203
                  34888999999998755567778889*************66336688999***********988774 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0022
                  EEEEE-----HHH..HHHHHHHH.HHSTTEEEEE---SSSS CS
    PF12697.2 179 vlviageaDrvvp..peearrla.ealpgarvvvlpgagHl 216
                   ++ ag++D + p    +  +la + +p+a +v +p++ H 
  MMETSP0890-20130614|40979_1 217 LTCFAGTEDNIFPshL-QRTHLAsATIPNAAFVLIPNGQHT 256
                  67889********742.3333331459************95 PP

>> PF07819.8  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-06    0.0058      62     137 ..     141     211 ..      96     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.1e-06
    PF07819.8  62 qaeylnqairkilslysssekeptsviliGHSmGGlVArsaltlpnyikdsvntivtlasPhalpplafdkdlekl 137
                  qa++++  +++ ++ +     + ++++l G   GG+VA  + + +  +  s   i+tl+sP  lp l    +++++
  MMETSP0890-20130614|40979_1 141 QADWIAAIVEREIEAN---GGDASKIVLAGAGHGGVVASYTGFTKL-TSTSLAGIITLSSPCILPNLL-KAKTKSF 211
                  4444444444444444...778899*************98877766.8899***********999854.4444555 PP

>> PF00135.23  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   3.6e-06    0.0097     196     251 ..     149     204 ..     142     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.6e-06
                  HHHHGGG----TTSEEEE------HHHHHHHHTCCGGCC-SEEE-----TTSTTSS CS
   PF00135.23 196 VkenIaaFGGDpnnvTlfGesAGaasvsllllspqsrglfhraIlqSGsalspwai 251
                  V ++I+a GGD +++ l+G + G++++s+  +++ ++     +I  S+ ++ p  +
  MMETSP0890-20130614|40979_1 149 VEREIEANGGDASKIVLAGAGHGGVVASYTGFTKLTSTSLAGIITLSSPCILPNLL 204
                  889******************************88888888888888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      265  (0.0193827); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.79
# Mc/sec: 885.74
//
Query:       MMETSP0890-20130614|40969_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-16   59.1   0.0    5.5e-16   58.4   0.0    1.3  1  PF00009.22 Elongation factor Tu GTP binding domain
    6.5e-09   36.2   0.0    1.5e-08   35.0   0.0    1.7  1  PF08477.8  Miro-like protein
    0.00053   19.8   0.1     0.0013   18.6   0.0    1.7  2  PF01926.18 50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   15.3   0.3      0.023   14.3   0.2    1.6  1  PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
      0.024   13.8   0.0      0.043   13.0   0.0    1.4  1  PF00071.17 Ras family
      0.089   11.8   0.0        0.2   10.7   0.0    1.6  1  PF09439.5  Signal recognition particle receptor beta subunit
      0.093   12.1   0.1          1    8.7   0.0    2.1  2  PF03029.12 Conserved hypothetical ATP binding protein
       0.11   11.8   0.0        7.9    5.8   0.0    2.9  2  PF10662.4  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> PF00009.22  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   3.2e-19   5.5e-16       3     183 ..     218     401 ..     216     405 .. 0.85

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 3.2e-19
                  EEEEEEEESTT---HHHHHHHHHHCCCCEHHHHHHHC-..HHHCCHHHH---BBSSEEEEEET.ESCEEEEEEE----GGGHHHHHHH..HHT-SEEEEEEETTS-.S-HHHHHHHHHHHHTT--EEEEEE-TTST..CHHHHHHHHHHHHHHHHHCTTGCT.......CGEEEEEE-STCCHHHHHHHHHHH CS
   PF00009.22   3 irnigiighvDhGKtTltdallykagaiskrgeeaegerlldklkeerergiTiksaaisleketkkrlinliDtPGHvdFskevirg..lrvlDgavlvvdaveG.vepqTeevlrlakklgvkiivviNKiDrv..eaeleeiveelkekllekylekge.......eevpvvpgSalkgegidaLleaiv 183
                   + +++ig  ++GKtTl++ l   +g+ ++    a  + +l    e ++ g T ++a + +        + l+D  GH+++ k++i g   r+ D+a+lvvd+++      T e+l +a +l++++ivv++  D++  ++  +   e lk+ l ++ +++++       ++ +++ +S+++g g  +L++++ 
  MMETSP0890-20130614|40969_1 218 PIRVAVIGSEESGKTTLIGVLA--TGRFDDGCGLA-RTSILRHCHEIQADGTTSDIAQVAAC------GVVLLDLAGHKKYLKTTICGltSRAPDIALLVVDVTDKqTRRMTLEHLGVAIALRLPVIVVLTHADLLpwNDTGKDNAERLKKLLARNCTYDSDdidlssiKNNKLFLVSSVTGAGYPELISTLQ 401
                  5789*****************9..55555544433.35679999999*********999887......9*******************77799**********98868899**************************977777777777766666666766678888889999************99998876 PP

>> PF08477.8  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   8.7e-12   1.5e-08       1     119 []     220     342 ..     220     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 8.7e-12
    PF08477.8   1 kvvvvGdkgvGKssllsqlvgeefp.........kkklpeeikgdtlavktlevdvdtellelwdlggr.eelkkehell.lkkadaillvydltdeesleevsellawlaelrklgkkipvilvgnklD 119
                  +v+v+G++++GK++l+  l+++ f+         +     ei+ d++++++ +v   +  + l dl+g+ ++lk ++  l +++ d +llv+d+td+++       l+ l  +   +  +pvi+v ++ D
  MMETSP0890-20130614|40969_1 220 RVAVIGSEESGKTTLIGVLATGRFDdgcglartsILRHCHEIQADGTTSDIAQVAACG--VVLLDLAGHkKYLKTTICGLtSRAPDIALLVVDVTDKQTRRMT---LEHLGVAI--ALRLPVIVVLTHAD 342
                  89***************************99977777778999999999999998888..6689***99445666666669999**************76553...23333322..34599999999987 PP

>> PF01926.18  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.4e-07    0.0013       1     113 [.     220     339 ..     220     340 .. 0.61
   2 ?   -4.1   0.0         8   1.4e+04      23      39 ..     598     614 ..     590     622 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 7.4e-07
                  EEEEE--TT---HHHHHHHH........C.ST.....CTEETS-TT-SSSE.SEEEEETTE..EEEEE---SSSHHHHHHHHHHHHHHHHHH.CTSSEEEEEEETTSHHHHHHHHHHHHH....HTCCCEEEEEE CS
   PF01926.18   1 evaivGrpNvGKStLinaLt........g.ek.....aakvsdypgtTrdi.tenevkkek..iilvDtPGiiegasedkeiegikkylekv.eradvlllvvdasavlkeadkellnel....eakkplilvln 113
                  +va++G   +GK+tLi  L         g ++      +   +  gtT di +          ++l+D++G       +k +   + ++    +  d++llvvd++++  ++ +  l++l    + + p+i+vl+
  MMETSP0890-20130614|40969_1 220 RVAVIGSEESGKTTLIGVLAtgrfddgcGlARtsilrHCHEIQADGTTSDIaQVA-----AcgVVLLDLAGH------KKYL--KTTICGLTsRAPDIALLVVDVTDK--QTRRMTLEHLgvaiALRLPVIVVLT 339
                  69*****************843333322131122333566777788999983332.....12369******3......2222..2234555545559*******6653..3456666777443335678888876 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 8
                  TCTEETS-TT-SSSESE CS
   PF01926.18  23 kaakvsdypgtTrdite 39 
                  + ak+ +++gtT++ + 
  MMETSP0890-20130614|40969_1 598 QSAKILHIHGTTQELVA 614
                  46788889999998744 PP

>> PF03205.9  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.3e-05     0.023       2      60 ..     220     276 ..     219     296 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
                  EEEEE-------HHHHHHHHHHHHH-------EEE-SS.-TTSS----TTHHHH----E CS
    PF03205.9   2 ivavvGpkdsGKTtlieklvnklkergyrvavvkhldhGqgeidkpGkDtwrlkagadl 60 
                  +vav+G + sGKTtli  l+    ++g   a    l h   ei   G+ t  ++++a  
  MMETSP0890-20130614|40969_1 220 RVAVIGSEESGKTTLIGVLATGRFDDGCGLARTSILRH-CHEIQADGT-TSDIAQVAAC 276
                  79*****************9999999976654333333.335988898.6666555554 PP

>> PF00071.17  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.5e-05     0.043       2      87 ..     221     317 ..     220     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.5e-05
                  EEEE-------HHHHHHHHHSSS-SS-..TTTS-EEEEEEEEEET........TEEEEEEEEEE---GGG..HHHHHHHHHT-SEEEEE--TT-HHHH CS
   PF00071.17   2 lvlvGdsavGKtslllrfvedkFkeey..esTigvdfytkeievd........gkevkleiwDTAGqeef..kslrslyyrdaegillvyditsresf 87 
                  + ++G++  GKt+l+    +++F++      T  +  + +ei++d           + + ++D AG  ++  +++  l  r  + +llv d+t++++ 
  MMETSP0890-20130614|40969_1 221 VAVIGSEESGKTTLIGVLATGRFDDGCglARTS-ILRHCHEIQADgttsdiaqVAACGVVLLDLAGHKKYlkTTICGLTSRAPDIALLVVDVTDKQTR 317
                  789*********************975224555.667777777776666665556778899*********4335667888999***********9985 PP

>> PF09439.5  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012       0.2       5      85 ..     220     311 ..     216     329 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
                  EEEEE--TT---HHHHHHHHHS............S-------SS-EEETT-...-----EEEE----GGGGHHHHHHHHHHGGB---EEEEET CS
    PF09439.5   5 avllvGlsdsGKTslftrLttd............svkktvtSqessaalkvksekgkkltliDfPGheklrqklleklkaksslkglvfvvDS 85 
                  +v ++G  +sGKT+l+  L t+              ++    q+  ++ ++ +     + l+D+ Gh+k  +  +  l  ++     + vvD 
  MMETSP0890-20130614|40969_1 220 RVAVIGSEESGKTTLIGVLATGrfddgcglartsILRHCHEIQADGTTSDIAQVAACGVVLLDLAGHKKYLKTTICGLT-SRAPDIALLVVDV 311
                  57899*****************88886665554222233333355566677888899999*******997655555533.3333333445555 PP

>> PF03029.12  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.13   2.2e+02       1      17 [.     223     239 ..     223     246 .. 0.87
   2 ?    8.7   0.0    0.0006         1     111     172 ..     290     347 ..     281     405 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.13
   PF03029.12   1 vvGpaGsGKttfvgals 17 
                  v+G   sGKtt++g l+
  MMETSP0890-20130614|40969_1 223 VIGSEESGKTTLIGVLA 239
                  899999******99876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0006
   PF03029.12 111 lakiveaLesefalvvvylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllkek 172
                  l+  +  L+s+ + +++ +vD +  ++    +++    l + + l+lP +v+l+++Dll  +
  MMETSP0890-20130614|40969_1 290 LKTTICGLTSRAPDIALLVVDVTDKQTRRMTLEH----LGVAIALRLPVIVVLTHADLLPWN 347
                  5556667777777788888887777776666666....89999***************8743 PP

>> PF10662.4  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0046       7.9       3      22 ..     220     239 ..     219     245 .. 0.87
   2 ?    2.1   0.0     0.065   1.1e+02      65     109 ..     303     351 ..     282     402 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0046
    PF10662.4   3 killiGkvgaGKTtLtqalk 22 
                  ++ +iG+ ++GKTtL   l 
  MMETSP0890-20130614|40969_1 220 RVAVIGSEESGKTTLIGVLA 239
                  6889***********98775 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.065
    PF10662.4  65 dvialvqdateees...vf.ppgfaslfnkpviGiiTkidlaedeenie 109
                  d+  lv+d+t++++   ++   g+a  ++ pvi ++T +dl   ++  +
  MMETSP0890-20130614|40969_1 303 DIALLVVDVTDKQTrrmTLeHLGVAIALRLPVIVVLTHADLLPWNDTGK 351
                  5555555555443211122133566666777777777777654333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        48  (0.00351083); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:01.12
# Mc/sec: 1518.40
//
Query:       MMETSP0890-20130614|40994_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-07   30.1   0.1    2.8e-07   29.9   0.1    1.1  1  PF13833.1  EF-hand domain pair
    4.1e-06   25.6   0.5    9.5e-06   24.4   0.2    1.7  2  PF00036.27 EF hand
    1.6e-05   24.2   1.7    9.9e-05   21.8   0.6    2.0  2  PF13405.1  EF-hand domain
    6.7e-05   22.8   0.3    7.4e-05   22.6   0.2    1.1  1  PF13499.1  EF-hand domain pair
  ------ inclusion threshold ------
      0.011   14.9   0.7      0.011   14.9   0.5    1.9  3  PF13202.1  EF hand
      0.055   13.0   0.1      0.061   12.8   0.1    1.1  1  PF10437.4  Bacterial lipoate protein ligase C-terminus
      0.069   12.7   0.1      0.073   12.6   0.1    1.1  1  PF12763.2  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.4e-10   2.8e-07       8      51 ..      14      54 ..      10      55 .] 0.87

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.4e-10
    PF13833.1  8 eeLkralallglkg..lseeevdilfrefDtdgdGkisfeEFcvll 51
                 eeL       +lkg  ls+e +d+lf  +D d++G + f+EF +ll
  MMETSP0890-20130614|40994_1 14 EELTN-----RLKGkaLSPEAIDALFLQHDKDNSGHLEFDEFFELL 54
                 67777.....555666***************************997 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.83   1.6e+03      18      26 ..       5      13 ..       3      20 .. 0.62
   2 !   24.4   0.2   4.9e-09   9.5e-06       2      26 ..      30      54 ..      29      55 .] 0.92

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.83
                 EHHHHHHHH CS
   PF00036.27 18 sfeEfkeal 26
                 + +E   al
  MMETSP0890-20130614|40994_1  5 DRNEIGIAL 13
                 556655555 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 4.9e-09
                 HHHHHHHHCTTTSSEBEHHHHHHHH CS
   PF00036.27  2 lkeaFkefDkDgdGkIsfeEfkeal 26
                 ++ +F   DkD++G+++f+Ef e+l
  MMETSP0890-20130614|40994_1 30 IDALFLQHDKDNSGHLEFDEFFELL 54
                 7899*****************9998 PP

>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.19   3.7e+02      16      27 ..       3      14 ..       2      22 .. 0.79
   2 !   21.8   0.6   5.1e-08   9.9e-05       2      26 ..      30      54 ..      29      55 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.19
                 -B---HHHHHHH CS
    PF13405.1 16 kidaeELrdaLr 27
                  +d++E++ aL 
  MMETSP0890-20130614|40994_1  3 SLDRNEIGIALE 14
                 589999988886 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 5.1e-08
                 HH---GCC-------B---HHHHHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELrdaL 26
                 + ++F ++Dkd++G ++++E+  +L
  MMETSP0890-20130614|40994_1 30 IDALFLQHDKDNSGHLEFDEFFELL 54
                 6799*****************8887 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   3.8e-08   7.4e-05      16      65 ..       3      53 ..       1      54 [. 0.84

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 3.8e-08
    PF13499.1 16 yldkeeLlrllkhlgsels.deevrevldyifkelDkngdGvlsfeEflqa 65
                 +ld++e+  +l  l + l+    ++e +d++f + Dk+++G l f+Ef ++
  MMETSP0890-20130614|40994_1  3 SLDRNEIGIALEELTNRLKgKALSPEAIDALFLQHDKDNSGHLEFDEFFEL 53
                 677888888887777777778888999*********************986 PP

>> PF13202.1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   4.1e+03      16      20 ..       4       8 ..       3       9 .. 0.57
   2 ?   -2.5   0.0       1.7   3.4e+03      19      22 ..      14      17 ..      13      21 .. 0.63
   3 ?   14.9   0.5   5.8e-06     0.011       1      24 [.      30      53 ..      30      54 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.1
                 B-HHH CS
    PF13202.1 16 IsreE 20
                 ++r E
  MMETSP0890-20130614|40994_1  4 LDRNE 8 
                 45555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.7
                 HHHH CS
    PF13202.1 19 eELk 22
                 eEL 
  MMETSP0890-20130614|40994_1 14 EELT 17
                 8885 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 5.8e-06
                 HHHHHHHH--S----B-HHHHHHH CS
    PF13202.1  1 lkdtFrafDlNgDGkIsreELkrl 24
                 ++++F + D++++G + ++E+ +l
  MMETSP0890-20130614|40994_1 30 IDALFLQHDKDNSGHLEFDEFFEL 53
                 56789999*************886 PP

>> PF10437.4  Bacterial lipoate protein ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.1e-05     0.061      44      86 .]      13      54 ..       7      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.1e-05
    PF10437.4 44 leeleekLiGvkydkeaikkalkeldlkeyfgnieleellell 86
                 leel+++L+G+  ++eai + + +   k+  g++e +e+ ell
  MMETSP0890-20130614|40994_1 13 LEELTNRLKGKALSPEAIDALFLQH-DKDNSGHLEFDEFFELL 54
                 89********************999.67888999999999886 PP

>> PF12763.2  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.8e-05     0.073      19      66 ..       4      51 ..       1      54 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
    PF12763.2 19 lkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66
                 l+ ++  ++ +++++ lk   l+ + ++ ++   d d+ g+l+f+ef 
  MMETSP0890-20130614|40994_1  4 LDRNEIGIALEELTNRLKGKALSPEAIDALFLQHDKDNSGHLEFDEFF 51
                 55566667778888999999**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       208  (0.0152136); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:00.65
# Mc/sec: 202.77
//
Query:       MMETSP0890-20130614|40992_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       417  (0.0305003); expected 273.4 (0.02)
Passed bias filter:                      270  (0.0197484); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.39s 00:00:00.85 Elapsed: 00:00:00.68
# Mc/sec: 694.24
//
Query:       MMETSP0890-20130614|40993_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-23   82.1   0.0    5.4e-23   81.3   0.0    1.3  1  PF00295.12 Glycosyl hydrolases family 28
    0.00012   21.7   0.6      0.015   14.8   0.1    2.6  2  PF13229.1  Right handed beta helix region


Domain annotation for each model (and alignments):
>> PF00295.12  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   7.8e-27   5.4e-23       9     248 ..      20     318 ..      17     324 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 7.8e-27
                  -B---...---EE-TT--....---EEEEE--BB--------E........EEEE-----EEEE---.--B------S------..-------EEEEEEEEEEEEEE--EEE--SS--E.EEE.EEEEEEEEEEEE-----.........................------EE-S-E-EEEE-EEEESSS-S-EE----....................-EEE----EE-----EE-EE-----.--EEEEEEEEEEEES-----EEEEET........T----EEEEEEEEEEEE----- CS
   PF00295.12   9 lsvpk..kgfllgltslsgpcksdatvtlegtttakskeskgk......d.liwitaekitvlgasGggtiDGqgkaWwdesckkkksckkkpkflrfsklknstiknlsiknspnfhv.svedcknltasditidapags.........................pNtDGidigsskgvtisnstiktgDDCiaigsgsk...................nisitnvtcggGhGiSiGsvggrsdentVsnvtvkdctvtgtdngvRiKtak........gatgtvsnityenielknvanp 248
                  + vpk    + + +++ +  + +++t++++g++ a++  ++++      d    ++++k+  ++++G+g iDG+g++Ww       +   k p +l++++++n +i+nl+i ++p f +   +  +++ ++++ti     +                          NtDGid+   + + i+n+ti++ DD iai+  ++                   ni++ n+    G GiS+Gsv   +    +++vt++d+++     gv iK +          ++ ++sn+ty++i++ + ++p
  MMETSP0890-20130614|40993_1  20 VIVPKnhTWYIVPQMICQ-GIANNVTLQIDGVLAASTRIDEWPldwggnDyMPLLKVTKSFGFRITGQGAIDGKGNKWWWAFLL-GELEFKRPILLEIDESQNVQISNLAIFDAPRFNIfLGTYTQGAFLQNLTIIVNWRAqldmidsvkkyqqnlfkrgslpmfpFNTDGIDVAGID-IIIENCTISNFDDVIAIKPAERkyemthlpdslndwkwcskNITVRNIITLYGAGISVGSVHPSNLLPCIHDVTFNDAKLYYPIKGVYIKPDLrtceendlPCAAFISNVTYSDITIYQGQKP 318
                  566664223455666666.778999***********65544443333226677899999999**************88876543.3578889***********************99761456678899999998877666689*********************99*******9986.77****************99999******************************************************************9533234366667899***********9876666 PP

>> PF13229.1  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.3e-06     0.015      49     111 ..     114     205 ..     112     223 .. 0.73
   2 !    9.2   0.4   0.00012      0.83      23      70 ..     186     251 ..     183     329 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
    PF13229.1  49 yiqnssnntisgnyienns.ggikls.gssnntienntitnngga.............................GiylnynssnntitnNtisn 111
                  +i +s+n++is+  i +   ++i+l  ++++  ++n ti+ n++a                             Gi++   + +++i+n+tisn
  MMETSP0890-20130614|40993_1 114 EIDESQNVQISNLAIFDAPrFNIFLGtYTQGAFLQNLTIIVNWRAqldmidsvkkyqqnlfkrgslpmfpfntdGIDVA--GIDIIIENCTISN 205
                  578899************9******99***************9995555555555555555555555555555555332..5556666666654 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00012
    PF13229.1  23 gdGiylggsgnatienntitnggegiyiqns....................snntisgnyiennsggi 70 
                   dGi + g +  +ien+ti+n ++ i+i+ +                    +n+t++++    ++ gi
  MMETSP0890-20130614|40993_1 186 TDGIDVAGIDI-IIENCTISNFDDVIAIKPAerkyemthlpdslndwkwcsKNITVRNIITLYGA-GI 251
                  57888888887.88888888866666666666666666666666666666555555555443333.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      203  (0.0148479); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:01.05
# Mc/sec: 780.53
//
Query:       MMETSP0890-20130614|41006_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0025   17.1   0.1     0.0031   16.9   0.1    1.3  1  PF13555.1  P-loop containing region of AAA domain
     0.0032   17.4   0.0     0.0033   17.4   0.0    1.1  1  PF13401.1  AAA domain
      0.005   16.7   0.0      0.005   16.7   0.0    1.0  1  PF13304.1  AAA domain
  ------ inclusion threshold ------
      0.011   15.9   0.1      0.011   15.9   0.1    1.1  1  PF13191.1  AAA ATPase domain
      0.016   15.8   2.7       0.11   13.1   0.3    2.0  2  PF13207.1  AAA domain
      0.019   14.1   0.1      0.019   14.1   0.0    1.1  1  PF12846.2  AAA-like domain
       0.02   14.6   0.7      0.031   14.0   0.2    1.5  2  PF13671.1  AAA domain
      0.026   13.8   0.0      0.026   13.8   0.0    1.2  1  PF01580.13 FtsK/SpoIIIE family
       0.12   11.6   0.1       0.12   11.6   0.0    1.2  1  PF13481.1  AAA domain
       0.12   12.5   1.1       0.31   11.2   0.8    1.6  1  PF13238.1  AAA domain


Domain annotation for each model (and alignments):
>> PF13555.1  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.3e-06    0.0031      27      40 ..       2      15 ..       1      29 [. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.3e-06
    PF13555.1 27 lltGasGsGKSTll 40
                 +l+GasGsGKST l
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTAL 15
                 699*********76 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.4e-06    0.0033       8      59 ..       2      51 ..       1      53 [. 0.79

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.4e-06
    PF13401.1  8 vvtGesGvGKTtllrrlarqldeeaeaae.karvvfveapastspkellqkll 59
                 v++G sG+GK+t+lr  a  +    ++   k+r+  +++  ++ p++l+++l+
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTALRLCALLDG---IPCAgKIRAWGIDLGTGMQPRQLRKRLA 51
                 79*************9999762...2333677777888888888888888775 PP

>> PF13304.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.6e-06     0.005       3      23 ..       2      22 ..       1      50 [. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.6e-06
    PF13304.1  3 viiGpNgsGKSnlLkaldflf 23
                 v++G+ gsGKS+ L+  ++l 
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTALRLCALLD 22
                 89**************99994 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.1   8.2e-06     0.011      27      65 ..       2      36 ..       1      53 [. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.2e-06
    PF13191.1 27 lvtGpsGiGKSsLlrelakpille.rlrfaagkfdqllrn 65
                 +++G+sG+GKS+ lr      ++  ++  +agk++  + +
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTALRL-----CALlDGIPCAGKIRAWGID 36
                 69************99.....6554777777777766655 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3     8e-05      0.11       4      18 ..       3      17 ..       2      20 .. 0.87
   2 ?    3.1   0.1       0.1   1.4e+02       3      12 ..      20      29 ..      18      32 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8e-05
                 -B--TT---HHHHHH CS
    PF13207.1  4 itGppGsGKsTlake 18
                 ++G++GsGKsT+ ++
  MMETSP0890-20130614|41006_1  3 LVGASGSGKSTALRL 17
                 78*********9886 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.1
                 --B--TT--- CS
    PF13207.1  3 aitGppGsGK 12
                 +++G+p++GK
  MMETSP0890-20130614|41006_1 20 LLDGIPCAGK 29
                 689******9 PP

>> PF12846.2  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.019       5      23 ..       2      20 ..       1      44 [. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.4e-05
    PF12846.2  5 lilGppGsGKSvllkklvl 23
                 +++G +GsGKS++l+ ++l
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTALRLCAL 20
                 689************9943 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.2e-05     0.031       3      18 ..       2      17 ..       1      27 [. 0.85
   2 ?   -1.7   0.0       1.6   2.1e+03       4      12 ..      21      29 ..      18      33 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.2e-05
    PF13671.1  3 llvGlpGsGKstlaer 18
                 +lvG++GsGKst ++ 
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTALRL 17
                 79**********9875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.6
    PF13671.1  4 lvGlpGsGK 12
                 l G p++GK
  MMETSP0890-20130614|41006_1 21 LDGIPCAGK 29
                 569999*99 PP

>> PF01580.13  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-05     0.026      43      56 ..       3      16 ..       1      48 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.9e-05
   PF01580.13 43 iaGatgsGKStflr 56
                  +Ga+gsGKSt+lr
  MMETSP0890-20130614|41006_1  3 LVGASGSGKSTALR 16
                 69**********98 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.9e-05      0.12      37      65 ..       2      28 ..       1      53 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.9e-05
    PF13481.1 37 llaGapgtGKStlalqlaaavatGepflg 65
                 +l+Ga+g+GKSt +  l+a +++G p  g
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTAL-RLCA-LLDGIPCAG 28
                 79**********87.3333.566777666 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   0.00023      0.31       2      17 ..       2      17 ..       2      30 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00023
    PF13238.1  2 litGtpGvGKtTlake 17
                 +++G++G+GK+T++++
  MMETSP0890-20130614|41006_1  2 VLVGASGSGKSTALRL 17
                 589*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        77  (0.00563195); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.68
# Mc/sec: 190.30
//
Query:       MMETSP0890-20130614|41000_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-11   41.9   0.0    1.2e-09   37.9   0.0    2.4  1  PF12014.3 Domain of unknown function (DUF3506)
  ------ inclusion threshold ------
      0.072   13.1   0.2       0.12   12.4   0.2    1.3  1  PF14173.1 ComG operon protein 7


Domain annotation for each model (and alignments):
>> PF12014.3  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.8e-13   1.2e-09      23     134 ..     218     307 ..     205     308 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.8e-13
    PF12014.3  23 rglyvgdysghgsEvlllkrkdgqwkedegekeeeekefkesleAiKLTGDpnvPrGevtFvakdigkkglvrvaeeklfkGarvvkskgrvAesgfrddkwvegellllsg 134
                  + ++ ++++ h  E+l++++                   ke+l A KLTGDp+vP+Ge+ F + d   k+  +        G+ ++ +k rvA+ gf++++w ++el+l+s+
  MMETSP0890-20130614|41000_1 218 QNIWFAEFGLHSRELLHFTNI------IS--------GEKEQLIATKLTGDPHVPAGEICFQTVDADYKNDAP-------IGS-RFTAKLRVADRGFQKPRWLNAELVLVSN 307
                  556666666666666666622......11........235789*******************99877776666.......254.5889********************9886 PP

>> PF14173.1  ComG operon protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.8e-05      0.12      30      74 ..     371     412 ..     348     424 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
    PF14173.1  30 krhlaeneeeqtgtfvfeeGtVsykitkedkdkvkvslqaetksg 74 
                   r+  +n+ +++g+  +++G ++ +++++  ++ +v+++++++ +
  MMETSP0890-20130614|41000_1 371 SRQ--TNQSDSEGVTEYKHGNARVQVSSSL-QTGVVAISVSLDEE 412
                  333..8999*********************.9********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       438  (0.0320363); expected 273.4 (0.02)
Passed bias filter:                      334  (0.0244295); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.37s 00:00:01.19 Elapsed: 00:00:00.82
# Mc/sec: 1472.88
//
Query:       MMETSP0890-20130614|41005_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1153  (0.0843329); expected 273.4 (0.02)
Passed bias filter:                      597  (0.0436659); expected 273.4 (0.02)
Passed Vit filter:                        47  (0.00343768); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.46s 00:00:00.92 Elapsed: 00:00:00.70
# Mc/sec: 496.39
//
Query:       MMETSP0890-20130614|41012_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-17   60.9   0.0    1.5e-16   60.3   0.0    1.3  1  PF04072.9 Leucine carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> PF04072.9  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.1e-20   1.5e-16      21     175 ..      74     230 ..      68     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.1e-20
                  -SCCCHCCHHHHCCCHBTHCCCC.--HHHH---HHHHHHHHHHHHHHHHHCTTCSEEEEE------HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHSHHHHHC...E-SEEE--TTSHHHHHHHHHHTT-TTST...EEEEEESSGGGS-HHHHHHHHHH CS
    PF04072.9  21 Dplaarlvraidldfskfereke.kvpelargiaaRtrffDdalrealekhpgarqvVnLGaGlDtrayRldwpaggvrvfEvDlpevielKerllkesgarppa...evryvavdlrdddwldaLaaagfdadrp...tlflaegllmYlteeavdallra 175
                  D++a +++ ++++     ++ ++   +  ++++++R+rf+D al+  lek++    v + GaG+ tra+  ++    ++++E+Dlp vi  K++l+k++++  p+   +++ ++++l d + +d + ++ ++++++   ++fl e ll+Yl+ +a+ +ll+a
  MMETSP0890-20130614|41012_1  74 DEIAYAMLPQKTKRIVA-KPLRSfYPRLHHQNVLMRSRFLDNALQPHLEKKESQIKVCSFGAGFCTRAFHYPH----IEWIEIDLPTVIHQKKALIKDRHDFLPNaapKLKHLSANLSDISSIDHVIDSALERTHKstcVVFLFEALLIYLPLDAAIHLLKA 230
                  66666666666322222.2233322333455689**************99888669**************998....66*******************98887863445666*******777777777767766666779****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       275  (0.0201141); expected 273.4 (0.02)
Passed bias filter:                      256  (0.0187244); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.41s 00:00:00.95 Elapsed: 00:00:00.78
# Mc/sec: 903.24
//
Query:       MMETSP0890-20130614|41027_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       182  (0.0133119); expected 273.4 (0.02)
Passed bias filter:                      169  (0.012361); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.39s 00:00:00.68 Elapsed: 00:00:00.76
# Mc/sec: 160.81
//
Query:       MMETSP0890-20130614|41028_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   14.2   2.9      0.061   13.8   2.0    1.2  1  PF11942.3 Spt5 transcription elongation factor, acidic N-terminal


Domain annotation for each model (and alignments):
>> PF11942.3  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.0   4.5e-06     0.061      38      74 ..       9      49 ..       2      67 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.5e-06
    PF11942.3 38 drrhreldrrrekeeeedaeelaevlklekrYgdet....e 74
                   r+r+  +rr  ++  +++  +e+++++++Y+++      
  MMETSP0890-20130614|41028_1  9 ITRIRDAHGRRMARQAAEERTNKEAIRIAEKYDQQRytqmG 49
                 56788888888888888888888888888888444332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       624  (0.0456407); expected 273.4 (0.02)
Passed bias filter:                      440  (0.0321826); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.80
# Mc/sec: 203.69
//
Query:       MMETSP0890-20130614|41024_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0007   19.1   0.1       0.87    9.2   0.1    2.5  2  PF02183.13 Homeobox associated leucine zipper
  ------ inclusion threshold ------
      0.031   13.9   0.2      0.057   13.0   0.1    1.3  1  PF07117.6  Protein of unknown function (DUF1373)


Domain annotation for each model (and alignments):
>> PF02183.13  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00048       3.3      11      35 ..     275     299 ..     274     307 .. 0.89
   2 !    9.2   0.1   0.00013      0.87      14      43 ..     524     553 ..     521     555 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00048
   PF02183.13  11 KrnydaLkaendsLqkEkekLraev 35 
                  ++++da++++ ds +++ ++L + v
  MMETSP0890-20130614|41024_1 275 RACFDAIASQKDSILHQENELTSAV 299
                  79************99999999876 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00013
   PF02183.13  14 ydaLkaendsLqkEkekLraevlsLkeklq 43 
                  + +L+ +   L +E+ +L+a +++L  +l 
  MMETSP0890-20130614|41024_1 524 FSTLALDRAELVSENRSLKARIAELEKRLY 553
                  789**********************99986 PP

>> PF07117.6  Protein of unknown function (DUF1373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   8.4e-06     0.057     127     173 ..     401     447 ..     396     452 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.4e-06
    PF07117.6 127 pgsqhqveqeswssssddedepeftpvseedqvyasktrsrynqkrl 173
                   g +h  e++  s ss  +de  f  ++ ++q y  +  s+y+q rl
  MMETSP0890-20130614|41024_1 401 TGKKHSFENKHPSDSSSSDDEDTFCMLAAQNQSYRNNFTSQYEQSRL 447
                  68999999998888888888889**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       651  (0.0476156); expected 273.4 (0.02)
Passed bias filter:                      382  (0.0279403); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:01.12
# Mc/sec: 1236.69
//
Query:       MMETSP0890-20130614|41031_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-25   86.3  10.4    1.4e-09   37.6   0.1    4.0  4  PF13424.1  Tetratricopeptide repeat
    2.4e-13   49.3  17.5    4.5e-05   23.0   0.1    6.1  6  PF13374.1  Tetratricopeptide repeat
    5.1e-12   45.1   4.4     0.0012   18.3   0.6    3.8  4  PF13414.1  TPR repeat
    3.6e-10   38.7   4.1       0.05   13.3   0.0    4.8  4  PF13176.1  Tetratricopeptide repeat
    2.7e-09   36.1   4.3        0.2   11.5   0.0    5.1  5  PF07719.12 Tetratricopeptide repeat
    4.4e-07   29.1   2.8      0.018   14.5   0.0    4.5  4  PF00515.23 Tetratricopeptide repeat
    1.9e-06   27.1   0.3      0.028   14.0   0.1    3.6  4  PF13181.1  Tetratricopeptide repeat
    5.1e-06   26.5  11.7       0.16   12.5   0.1    5.1  5  PF13428.1  Tetratricopeptide repeat
    0.00036   20.9  11.9       0.12   12.9   0.4    3.6  5  PF13432.1  Tetratricopeptide repeat
     0.0012   18.8   0.4        1.6    9.0   0.0    4.7  5  PF13431.1  Tetratricopeptide repeat
     0.0074   16.2   3.1      0.041   13.9   0.3    2.6  2  PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.018   14.6   0.0       0.16   11.5   0.0    2.5  2  PF12041.3  Transcriptional regulator DELLA protein N terminal
       0.04   13.6   5.1      0.077   12.7   0.3    2.7  4  PF13371.1  Tetratricopeptide repeat
      0.061   13.6   8.4       0.25   11.7   0.1    4.7  5  PF13174.1  Tetratricopeptide repeat
        2.7    8.2  10.6         27    5.0   0.0    4.0  3  PF10824.3  Protein of unknown function (DUF2580)


Domain annotation for each model (and alignments):
>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   1.5e-12   1.4e-09       9      72 ..       2      66 ..       1      67 [. 0.95
   2 !   22.7   0.5   6.7e-08   6.1e-05       8      60 ..      78     131 ..      75     136 .. 0.92
   3 !   29.1   0.2   6.6e-10     6e-07      25      76 ..     154     205 ..     153     207 .. 0.95
   4 ?    5.4   0.0     0.017        15      28      50 ..     198     221 ..     197     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.5e-12
    PF13424.1  9 nnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalgdydeAleylekA 72
                 +nla +  +l + ++A  +++kal +  ++l++ hpd+a  l++la++++++g+ ++A+  +e+ 
  MMETSP0890-20130614|41031_1  2 TNLAILSSELNEIQKAVHYFRKALRVhEARLHPSHPDLAQPLRQLATAFARAGQPSQAKGIYERL 66
                 79999999******************999*******************************99985 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 6.7e-08
    PF13424.1   8 lnnlalvlrrlgdydeAlelyekalel.lrelgddhpdtaralnnlanlylalg 60 
                  l+ +a+vl++l dy  A+  +++al+  +r +g +  ++a+al +la + +   
  MMETSP0890-20130614|41031_1  78 LTSYAHVLMQLNDYANAEIALQQALTStQRIYGMETTQVATALSELALCRRNSR 131
                  5789********************************************988765 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 6.6e-10
    PF13424.1  25 lelyekalellrelgddhpdtaralnnlanlylalgdydeAleylekAleia 76 
                  ++l+++al+++ ++ +d+  +a++l nl+ ++l + +  eA   + kA++++
  MMETSP0890-20130614|41031_1 154 EQLLRRALAIYNKFEPDSEAVATTLDNLGLVLLDASRCREAALAFDKAVRLR 205
                  689**********************************************998 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.017
    PF13424.1  28 yekalel.lrelgddhpdtaraln 50 
                  + ka+ l l+ +g++hp+t+++l 
  MMETSP0890-20130614|41031_1 198 FDKAVRLrLQCHGPNHPETLDSLA 221
                  7899***9***********99985 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.7e-06     0.007       5      42 .]       1      38 [.       1      38 [. 0.97
   2 !    6.4   0.1    0.0086       7.9       7      28 ..      45      66 ..      43      69 .. 0.90
   3 !   10.0   0.1   0.00064      0.58       8      37 ..      81     110 ..      78     111 .. 0.91
   4 ?   -0.5   0.2       1.2   1.1e+03       1      16 [.     116     131 ..     116     135 .. 0.76
   5 ?    1.7   0.0      0.26   2.4e+02      22      34 ..     154     166 ..     153     172 .. 0.82
   6 !   23.0   0.1     5e-08   4.5e-05       1      42 []     174     215 ..     174     215 .. 0.97

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.7e-06
    PF13374.1  5 lnnLAlalrargryeeAlaleeealairrrllGddHPd 42
                 ++nLA++ +++++ ++A+ ++++al ++++ l + HPd
  MMETSP0890-20130614|41031_1  1 MTNLAILSSELNEIQKAVHYFRKALRVHEARLHPSHPD 38
                 78******************************999998 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0086
    PF13374.1  7 nLAlalrargryeeAlaleeea 28
                  LA a+++ g+  +A  ++e+ 
  MMETSP0890-20130614|41031_1 45 QLATAFARAGQPSQAKGIYERL 66
                 59*****************985 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00064
    PF13374.1   8 LAlalrargryeeAlaleeealairrrllG 37 
                   A +l+++++y+ A+  +++al+  +r++G
  MMETSP0890-20130614|41031_1  81 YAHVLMQLNDYANAEIALQQALTSTQRIYG 110
                  5899********************999987 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 1.2
    PF13374.1   1 taaalnnLAlalrarg 16 
                  +a+al+ LAl  r+ +
  MMETSP0890-20130614|41031_1 116 VATALSELALCRRNSR 131
                  7999999999766555 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.26
    PF13374.1  22 laleeealairrr 34 
                  ++l+++alai+ +
  MMETSP0890-20130614|41031_1 154 EQLLRRALAIYNK 166
                  789*******988 PP

  == domain 6    score: 23.0 bits;  conditional E-value: 5e-08
    PF13374.1   1 taaalnnLAlalrargryeeAlaleeealairrrllGddHPd 42 
                  +a++l nL+l+l +  r +eA   + +a+ +r + +G++HP+
  MMETSP0890-20130614|41031_1 174 VATTLDNLGLVLLDASRCREAALAFDKAVRLRLQCHGPNHPE 215
                  79*******************99999***************6 PP

>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.5e-06    0.0041      15      65 ..      10      67 ..       2      70 .. 0.79
   2 !   18.3   0.6   1.3e-06    0.0012       2      65 ..      39     102 ..      38     104 .. 0.91
   3 !   12.2   0.3    0.0001     0.095       6      52 ..      78     132 ..      73     138 .. 0.79
   4 !   15.4   0.0     1e-05    0.0093       3      45 ..     175     222 ..     173     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.5e-06
    PF13414.1 15 kegdydeAieayekAle.....ldpnnae...lyynlAlaylklgkdyeeAledyekAl 65
                 ++++ ++A+ +++kAl+     l p++++    + +lA a+ + g ++ +A   ye+ +
  MMETSP0890-20130614|41031_1 10 ELNEIQKAVHYFRKALRvhearLHPSHPDlaqPLRQLATAFARAG-QPSQAKGIYERLI 67
                 67999***********8333334566655555*************.6999999998865 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.3e-06
    PF13414.1   2 nAealkelGnalfkegdydeAieayekAleldpn.naelyynlAlaylklgkdyeeAledyekAl 65 
                  +A+ l++l+ a+ ++g++ +A   ye+ + l  + +++ +   A+++++l+ dy  A  ++++Al
  MMETSP0890-20130614|41031_1  39 LAQPLRQLATAFARAGQPSQAKGIYERLILLTVHyDPDDLTSYAHVLMQLN-DYANAEIALQQAL 102
                  577799*************************75548**************8.8***********9 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.0001
    PF13414.1   6 lkelGnalfkegdydeAieayekAleld........pnnaelyynlAlaylklgk 52 
                  l   + +l++++dy++A+ a+++Al            + a +++ lAl+ ++  +
  MMETSP0890-20130614|41031_1  78 LTSYAHVLMQLNDYANAEIALQQALTSTqriygmetTQVATALSELALCRRNSRR 132
                  6677899******************8643444554488899********998765 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 1e-05
    PF13414.1   3 AealkelGnalfkegdydeAieayekAleld.....pnnaelyynlAl 45 
                  A +l +lG +l+ + +  eA  a++kA++l+     pn++e +  lA 
  MMETSP0890-20130614|41031_1 175 ATTLDNLGLVLLDASRCREAALAFDKAVRLRlqchgPNHPETLDSLAM 222
                  67789*************************777778*****9988885 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.4e-05      0.05       3      35 ..       2      34 ..       1      35 [. 0.89
   2 !   11.6   0.0   0.00018      0.17       3      34 ..      44      77 ..      43      79 .. 0.89
   3 !    9.8   0.1   0.00072      0.66       6      33 ..      82     107 ..      78     112 .. 0.82
   4 ?    1.8   0.0      0.25   2.3e+02       1      27 [.     177     203 ..     177     215 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.4e-05
    PF13176.1  3 lnLarlysrlgdyekAielyeraLaltkdplda 35
                  nLa l s+l++ +kA+ ++++aL+++++ l++
  MMETSP0890-20130614|41031_1  2 TNLAILSSELNEIQKAVHYFRKALRVHEARLHP 34
                 5999999***************99999887765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00018
    PF13176.1  3 lnLarlysrlgdyekAielyer..aLaltkdpld 34
                  +La ++ r g+ ++A  +yer  +L +++dp+d
  MMETSP0890-20130614|41031_1 44 RQLATAFARAGQPSQAKGIYERliLLTVHYDPDD 77
                 68********************877788899987 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00072
    PF13176.1   6 arlysrlgdyekAielyeraLaltkdpl 33 
                  a++ ++l+dy +A+ ++++  alt++++
  MMETSP0890-20130614|41031_1  82 AHVLMQLNDYANAEIALQQ--ALTSTQR 107
                  78899**************..7776554 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.25
    PF13176.1   1 allnLarlysrlgdyekAielyeraLa 27 
                  +l+nL+ +  +  + ++A+ ++ +a +
  MMETSP0890-20130614|41031_1 177 TLDNLGLVLLDASRCREAALAFDKAVR 203
                  688999999999999999988888443 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00022       0.2       6      29 ..       3      26 ..       1      30 [. 0.90
   2 ?    5.9   0.0     0.014        13       4      30 ..      43      69 ..      40      70 .. 0.89
   3 !   11.1   0.0    0.0003      0.27       7      28 ..      81     102 ..      75     105 .. 0.90
   4 ?   -1.7   0.1       3.6   3.3e+03      22      32 ..     155     165 ..     153     167 .. 0.76
   5 ?    5.1   0.0     0.025        23       3      30 ..     177     204 ..     175     207 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00022
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
   PF07719.12  6 nlGlayyklgdyeeAleafekAle 29
                 nl+ +  +l++ ++A+++f+kAl+
  MMETSP0890-20130614|41031_1  3 NLAILSSELNEIQKAVHYFRKALR 26
                 78999999***************8 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.014
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12  4 lynlGlayyklgdyeeAleafekAlel 30
                 l +l+ a +++g++ +A+  +e+ + l
  MMETSP0890-20130614|41031_1 43 LRQLATAFARAGQPSQAKGIYERLILL 69
                 789********************9876 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.0003
                  HHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12   7 lGlayyklgdyeeAleafekAl 28 
                   + ++++l+dy+ A+ a+++Al
  MMETSP0890-20130614|41031_1  81 YAHVLMQLNDYANAEIALQQAL 102
                  6899*****************9 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 3.6
                  HHHHHHHHH-T CS
   PF07719.12  22 eafekAleldP 32 
                  +++++Al+++ 
  MMETSP0890-20130614|41031_1 155 QLLRRALAIYN 165
                  67899999886 PP

  == domain 5    score: 5.1 bits;  conditional E-value: 0.025
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF07719.12   3 alynlGlayyklgdyeeAleafekAlel 30 
                   l nlGl+++ + +  eA+ af+kA++l
  MMETSP0890-20130614|41031_1 177 TLDNLGLVLLDASRCREAALAFDKAVRL 204
                  688999999999999***********98 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-05     0.018       5      30 ..       2      27 ..       1      29 [. 0.92
   2 ?    0.0   0.0      0.71   6.5e+02       5      25 ..      44      64 ..      40      68 .. 0.82
   3 !    8.2   0.1    0.0019       1.7       8      28 ..      82     102 ..      82     103 .. 0.93
   4 ?    2.0   0.0      0.18   1.6e+02       6      30 ..     180     204 ..     180     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23  5 ynlGnaylklgkydeAleyyekALel 30
                  nl+ +  +l++ ++A+ y++kAL++
  MMETSP0890-20130614|41031_1  2 TNLAILSSELNEIQKAVHYFRKALRV 27
                 5999999*****************86 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.71
                 HHHHHHHHHTT-HHHHHHHHH CS
   PF00515.23  5 ynlGnaylklgkydeAleyye 25
                  +l+ a+ + g++ +A   ye
  MMETSP0890-20130614|41031_1 44 RQLATAFARAGQPSQAKGIYE 64
                 5799***********976665 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0019
                  HHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23   8 GnaylklgkydeAleyyekAL 28 
                  ++++++l++y  A+ + ++AL
  MMETSP0890-20130614|41031_1  82 AHVLMQLNDYANAEIALQQAL 102
                  6899****************9 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.18
                  HHHHHHHHTT-HHHHHHHHHHHHHH CS
   PF00515.23   6 nlGnaylklgkydeAleyyekALel 30 
                  nlG+++l   +  eA  +++kA++l
  MMETSP0890-20130614|41031_1 180 NLGLVLLDASRCREAALAFDKAVRL 204
                  8999999999999*********988 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0016       1.4       6      29 ..       3      26 ..       1      31 [. 0.86
   2 ?   -1.8   0.0       3.4   3.1e+03       3      25 ..      42      64 ..      40      67 .. 0.78
   3 !   14.0   0.1     3e-05     0.028       6      31 ..      80     105 ..      76     109 .. 0.87
   4 ?   -2.0   0.0       4.2   3.8e+03       6      30 ..     180     204 ..     177     205 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0016
                 T---HHHHTT-HHHHHHHHH---H CS
    PF13181.1  6 nlGdiYrqlGdydkAkeylekale 29
                 nl+ +  +l+++ kA  y++kal 
  MMETSP0890-20130614|41031_1  3 NLAILSSELNEIQKAVHYFRKALR 26
                 67777789**************96 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.4
                 -TTT---HHHHTT-HHHHHHHHH CS
    PF13181.1  3 ayynlGdiYrqlGdydkAkeyle 25
                  +++l+ +++  G+ ++Ak  +e
  MMETSP0890-20130614|41031_1 42 PLRQLATAFARAGQPSQAKGIYE 64
                 57889999999999999985555 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 3e-05
                  T---HHHHTT-HHHHHHHHH---HHH CS
    PF13181.1   6 nlGdiYrqlGdydkAkeylekalelk 31 
                    +++++ql+dy +A+ +l++al   
  MMETSP0890-20130614|41031_1  80 SYAHVLMQLNDYANAEIALQQALTST 105
                  6799******************9875 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 4.2
                  T---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   6 nlGdiYrqlGdydkAkeylekalel 30 
                  nlG+++++  +  +A  ++ ka+ l
  MMETSP0890-20130614|41031_1 180 NLGLVLLDASRCREAALAFDKAVRL 204
                  5666666666666888889999876 PP

>> PF13428.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.037        34       7      35 ..       4      37 ..       2      41 .. 0.75
   2 !   12.5   0.1   0.00017      0.16       4      29 ..      43      68 ..      39      79 .. 0.83
   3 !    9.9   0.2    0.0012       1.1       4      29 ..      78     103 ..      75     123 .. 0.89
   4 ?    1.0   0.0      0.88     8e+02      21      32 ..     154     165 ..     153     178 .. 0.61
   5 ?    2.5   0.1       0.3   2.7e+02       4      42 ..     178     221 ..     174     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.037
    PF13428.1  7 larallalGdpdeAiallrrala.....laPdda 35
                 la++  +l++ ++A+ ++r+al+     l+P+++
  MMETSP0890-20130614|41031_1  4 LAILSSELNEIQKAVHYFRKALRvhearLHPSHP 37
                 77778899*************9844444555555 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00017
    PF13428.1  4 llalarallalGdpdeAiallrrala 29
                 l++la a++++G+p +A   ++r++ 
  MMETSP0890-20130614|41031_1 43 LRQLATAFARAGQPSQAKGIYERLIL 68
                 789********************974 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0012
    PF13428.1   4 llalarallalGdpdeAiallrrala 29 
                  l  +a++l++l+d++ A+ +l++al 
  MMETSP0890-20130614|41031_1  78 LTSYAHVLMQLNDYANAEIALQQALT 103
                  6789********************85 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.88
    PF13428.1  21 iallrralalaP 32 
                  ++llrrala + 
  MMETSP0890-20130614|41031_1 154 EQLLRRALAIYN 165
                  689999998543 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.3
    PF13428.1   4 llalarallalGdpdeAiallrrala.....laPddaealllLa 42 
                  l  l+ +ll++ +  eA+ ++++a++     ++P+++e l  La
  MMETSP0890-20130614|41031_1 178 LDNLGLVLLDASRCREAALAFDKAVRlrlqcHGPNHPETLDSLA 221
                  6679999999999999999****998666666788888776665 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.4   0.00014      0.12       3      58 ..       4      67 ..       2      80 .. 0.85
   2 !   11.2   1.3   0.00046      0.42       2      58 ..      45     102 ..      44     109 .. 0.91
   3 ?    6.4   0.2     0.015        14       3      27 ..      81     105 ..      79     132 .. 0.69
   4 ?    6.3   0.6     0.016        15      14      59 ..     158     203 ..     154     207 .. 0.79
   5 !    7.3   0.1    0.0076       6.9       3      38 ..     181     221 ..     179     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
    PF13432.1  3 lArallraGdydeAlaaleaalala........PeaaeallllaeallrlgrldeAaallraal 58
                 lA +  ++++ ++A++++++al+ +        P+ a+ l  la a++r+g++ +A   +++++
  MMETSP0890-20130614|41031_1  4 LAILSSELNEIQKAVHYFRKALRVHearlhpshPDLAQPLRQLATAFARAGQPSQAKGIYERLI 67
                 566667889999******************99************************95555544 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00046
    PF13432.1   2 alArallraGdydeAlaaleaalala.PeaaeallllaeallrlgrldeAaallraal 58 
                  +lA a+ raG++ +A  ++e+++ l    +++ l  +a +l++l++++ A+++l++al
  MMETSP0890-20130614|41031_1  45 QLATAFARAGQPSQAKGIYERLILLTvHYDPDDLTSYAHVLMQLNDYANAEIALQQAL 102
                  69************************95599999*****************8888887 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.015
    PF13432.1   3 lArallraGdydeAlaaleaalala 27 
                  +A+ l++++dy+ A+ al++al   
  MMETSP0890-20130614|41031_1  81 YAHVLMQLNDYANAEIALQQALTST 105
                  6788888888888888888887665 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.016
    PF13432.1  14 deAlaaleaalalaPeaaeallllaeallrlgrldeAaallraala 59 
                  ++Ala+++++  +    a  l +l+ +ll+++r  eAa ++++a++
  MMETSP0890-20130614|41031_1 158 RRALAIYNKFEPDSEAVATTLDNLGLVLLDASRCREAALAFDKAVR 203
                  5677777777777777999999999999999999999988888775 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0076
    PF13432.1   3 lArallraGdydeAlaaleaalala.....Peaaealllla 38 
                  l++ ll+a + +eA+ a+++a++l      P ++e l  la
  MMETSP0890-20130614|41031_1 181 LGLVLLDASRCREAALAFDKAVRLRlqchgPNHPETLDSLA 221
                  7899********************99999988888776666 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0         2   1.8e+03      16      32 ..       1      17 [.       1      19 [. 0.88
   2 !    9.0   0.0    0.0018       1.6       9      33 ..      36      60 ..      20      61 .. 0.89
   3 ?    2.6   0.0       0.2   1.8e+02       2      33 ..      63      95 ..      62      96 .. 0.82
   4 ?   -0.4   0.0       1.8   1.6e+03      10      28 ..     169     190 ..     156     195 .. 0.62
   5 ?   -0.8   0.0       2.4   2.2e+03       9      24 ..     209     225 ..     198     239 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2
    PF13431.1 16 ynnLAelllnnGdleeA 32
                 ++nLA l +++++ ++A
  MMETSP0890-20130614|41031_1  1 MTNLAILSSELNEIQKA 17
                 579*********99998 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0018
    PF13431.1  9 dPnnadaynnLAelllnnGdleeAe 33
                 +P+ a+ +++LA++++++G++ +A+
  MMETSP0890-20130614|41031_1 36 HPDLAQPLRQLATAFARAGQPSQAK 60
                 6999****************99986 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.2
    PF13431.1  2 yekaleld.PnnadaynnLAelllnnGdleeAe 33
                 ye+++ l    ++d ++ +A +l  ++d++ Ae
  MMETSP0890-20130614|41031_1 63 YERLILLTvHYDPDDLTSYAHVLMQLNDYANAE 95
                 677777765778899999***********9986 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 1.8
    PF13431.1  10 Pnn...adaynnLAelllnnGd 28 
                  P++   a  + nL+++ll++ +
  MMETSP0890-20130614|41031_1 169 PDSeavATTLDNLGLVLLDASR 190
                  5556556666799999987766 PP

  == domain 5    score: -0.8 bits;  conditional E-value: 2.4
    PF13431.1   9 d.PnnadaynnLAelll 24 
                  + Pn+++ +  LA + +
  MMETSP0890-20130614|41031_1 209 HgPNHPETLDSLAMYRK 225
                  34999998888887666 PP

>> PF12895.2  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   4.5e-05     0.041       3      83 ..      12     100 ..      10     101 .. 0.76
   2 ?    2.2   0.1      0.19   1.8e+02      11      50 ..     156     200 ..     115     213 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-05
                  T-HHHHHHHHHHHCCC-ST.....-HHHHCHHH.HHHHHHH---HHHHHHHHHC..TSHCHCBHHHHHHHHHHHHHTT-HHHHCCCHHH CS
    PF12895.2   3 hnyknAlflaekllaespk.....dpedaylya.lAlclylngeykrAyellrk..leldssslgcryllArcllklgkydeAiavLek 83 
                  +++++A+ +++k+l  +        p+ a  ++ lA ++ ++g++ +A  ++++  l      ++    +A++l +l++y  A+ +L++
  MMETSP0890-20130614|41031_1  12 NEIQKAVHYFRKALRVHEArlhpsHPDLAQPLRqLATAFARAGQPSQAKGIYERliLLTVHYDPDDLTSYAHVLMQLNDYANAEIALQQ 100
                  56778888888888887766654322444434348*****************997644455557888999**************99986 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.19
                  HHHHHCCC-ST.-H..HHH..CHHHHHHHHHH---HHHHHHHHHC CS
    PF12895.2  11 laekllaespk.dp..eda..ylyalAlclylngeykrAyellrk 50 
                  l++++la  +k +p  e++   l +l+l+l+ + + ++A  +++k
  MMETSP0890-20130614|41031_1 156 LLRRALAIYNKfEPdsEAVatTLDNLGLVLLDASRCREAALAFDK 200
                  445555555554222122222333366667666666666666643 PP

>> PF12041.3  Transcriptional regulator DELLA protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.16      16      66 ..      36      90 ..      32      98 .. 0.72
   2 ?   -1.2   0.0       1.6   1.5e+03      15      35 ..     170     190 ..     161     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHHHTT-....----.----HCCHCCS-TTBHHHHHHHHHHC--- CS
    PF12041.3 16 madvAqkLEqLetvlgaa....qedg.ishlssdtvhynpsdlssWvesmlselnp 66
                 + d+Aq L qL t+ + a    q +g    l   tvhy+p dl s+   +  +ln+
  MMETSP0890-20130614|41031_1 36 HPDLAQPLRQLATAFARAgqpsQAKGiYERLILLTVHYDPDDLTSYAHVL-MQLND 90
                 6799***********9985332334433456666***********98755.45665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.6
                  GHHHHHHHHHHHHHHHTT--- CS
    PF12041.3  15 dmadvAqkLEqLetvlgaaqe 35 
                  d ++vA  L++L  vl  a+ 
  MMETSP0890-20130614|41031_1 170 DSEAVATTLDNLGLVLLDASR 190
                  7789********999987754 PP

>> PF13371.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.21   1.9e+02      36      70 ..       5      44 ..       3      47 .. 0.74
   2 ?    6.4   0.2    0.0077         7      11      48 ..      21      59 ..      17      64 .. 0.92
   3 ?   12.7   0.3   8.4e-05     0.077       4      59 ..      49     105 ..      46     124 .. 0.86
   4 ?   -3.3   0.0       8.2   7.5e+03      40      56 ..     186     202 ..     180     216 .. 0.53

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.21
    PF13371.1 36 GlllaqlgclaaAaedLeafl.....elcpdapdaelira 70
                 ++l  +l++ + A++ ++ +l      l p++pd ++   
  MMETSP0890-20130614|41031_1  5 AILSSELNEIQKAVHYFRKALrvheaRLHPSHPDLAQPLR 44
                 7888899999999999999997666666667777766555 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0077
    PF13371.1 11 ferALavverllll.aPddpyerRDrGlllaqlgclaaA 48
                 f +AL+v e +l+  +Pd ++ +R  + + a+ g++++A
  MMETSP0890-20130614|41031_1 21 FRKALRVHEARLHPsHPDLAQPLRQLATAFARAGQPSQA 59
                 679*********9889*********************99 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 8.4e-05
    PF13371.1   4 iylreedferALavverllllaPd.dpyerRDrGlllaqlgclaaAaedLeaflelc 59 
                  + +r++++ +A  ++erl+ll  + dp ++  ++ +l+ql+++a A  +L+++l + 
  MMETSP0890-20130614|41031_1  49 AFARAGQPSQAKGIYERLILLTVHyDPDDLTSYAHVLMQLNDYANAEIALQQALTST 105
                  6689999**************8888**************************999665 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 8.2
    PF13371.1  40 aqlgclaaAaedLeafl 56 
                      + ++Aa +++ ++
  MMETSP0890-20130614|41031_1 186 LDASRCREAALAFDKAV 202
                  55555555554444444 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.4   1.3e+03       6      28 ..       4      26 ..       2      28 .. 0.79
   2 ?   11.7   0.1   0.00027      0.25       5      27 ..      45      67 ..      43      68 .. 0.93
   3 ?    2.1   0.1      0.32   2.9e+02      10      28 ..      85     103 ..      80     104 .. 0.80
   4 ?   -1.3   0.0       3.9   3.6e+03      17      26 ..     158     167 ..     151     171 .. 0.76
   5 ?   -2.0   0.0       6.7   6.2e+03       7      27 ..     182     202 ..     178     204 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAlealerlik 28
                 la +  +l++ ++A+ ++++ ++
  MMETSP0890-20130614|41031_1  4 LAILSSELNEIQKAVHYFRKALR 26
                 566666777999*******9886 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1  5 klalsyyklgdtdeAlealerli 27
                 +la ++ ++g++++A+ ++erli
  MMETSP0890-20130614|41031_1 45 QLATAFARAGQPSQAKGIYERLI 67
                 89******99***********98 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.32
                  HHHHHHHHHHHHHHHHHHH CS
    PF13174.1  10 yyklgdtdeAlealerlik 28 
                  + +l+d+++A  al++ ++
  MMETSP0890-20130614|41031_1  85 LMQLNDYANAEIALQQALT 103
                  55667**********9986 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 3.9
                  HHHHHHHHHH CS
    PF13174.1  17 deAlealerl 26 
                  ++Al++++++
  MMETSP0890-20130614|41031_1 158 RRALAIYNKF 167
                  6899999987 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 6.7
                  HHHHHHHHHHHHHHHHHHHHH CS
    PF13174.1   7 alsyyklgdtdeAlealerli 27 
                  +l+++ + + +eA  a+++ +
  MMETSP0890-20130614|41031_1 182 GLVLLDASRCREAALAFDKAV 202
                  555555555556666666554 PP

>> PF10824.3  Protein of unknown function (DUF2580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.17   1.5e+02      52      90 ..      15      53 ..      11      60 .. 0.82
   2 ?    4.9   0.5     0.032        29       6      74 ..      72     139 ..      69     173 .. 0.85
   3 ?    5.0   0.0     0.029        27      23      65 ..     188     230 ..     187     248 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.17
    PF10824.3 52 naalaeaeearsaagealaaastdlaekLraAaaaYeat 90
                 ++a+  + +a +   ++l+ ++ dla+ Lr+ a+a+ ++
  MMETSP0890-20130614|41031_1 15 QKAVHYFRKALRVHEARLHPSHPDLAQPLRQLATAFARA 53
                 66777788888888899999*************999876 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.032
    PF10824.3   6 sVdpahlrelAakhdevAaeiasavaaaagvaaavaathGpicaafnaalaeaeearsaagealaaast 74 
                  + dp+ l ++A+   +  +++++  a   ++ ++ ++ +G+ + ++++al+e+   r+ + + ++  +t
  MMETSP0890-20130614|41031_1  72 HYDPDDLTSYAHVLMQLNDYANAEIALQ-QALTSTQRIYGMETTQVATALSELALCRRNSRRNHNNETT 139
                  5689999999999999999999888888.999********************99888877666665555 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.029
    PF10824.3  23 AaeiasavaaaagvaaavaathGpicaafnaalaeaeearsaa 65 
                  A+++++a+ a +++++  +++hGp + ++ ++la + +ar++ 
  MMETSP0890-20130614|41031_1 188 ASRCREAALAFDKAVRLRLQCHGPNHPETLDSLAMYRKAREEI 230
                  6677888888889999999********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       776  (0.0567583); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.82u 0.43s 00:00:01.25 Elapsed: 00:00:00.99
# Mc/sec: 1055.37
//
Query:       MMETSP0890-20130614|41039_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-17   60.9   1.9    9.7e-17   60.7   1.3    1.1  1  PF13921.1  Myb-like DNA-binding domain
    1.3e-16   60.2   2.4    1.1e-12   47.6   1.0    2.1  2  PF00249.26 Myb-like DNA-binding domain
    0.00023   21.1   1.9    0.00054   19.9   1.3    1.6  2  PF13837.1  Myb/SANT-like DNA-binding domain
    0.00068   19.3   2.0      0.004   16.8   0.3    2.6  2  PF13873.1  Myb/SANT-like DNA-binding domain
     0.0098   15.9   0.1      0.016   15.2   0.0    1.3  1  PF09420.5  Ribosome biogenesis protein Nop16
  ------ inclusion threshold ------
      0.012   15.2   0.4       0.33   10.6   0.2    2.3  2  PF08914.6  Rap1 Myb domain


Domain annotation for each model (and alignments):
>> PF13921.1  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   1.3   4.3e-20   9.7e-17       1      57 [.      12      75 ..      12      78 .. 0.95

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 4.3e-20
    PF13921.1  1 WtdeEdeiLlklveeygn.dWseIaeelg......rRtplacqdrwknkLrpkisrapwtkeed 57
                 W+  Ede++++lve++g   W+ I++ l+       Rt ++c+ rw+n+L+p+i+r+pw+++e+
  MMETSP0890-20130614|41039_1 12 WSRKEDEAIQRLVEKHGTkRWAVISQDLNkevpgsLRTGKQCRTRWLNHLDPDIKREPWSEAEE 75
                 ****************9637********99*******************************998 PP

>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   1.0     5e-16   1.1e-12       1      48 []       9      61 ..       9      61 .. 0.97
   2 !   11.9   0.0   6.9e-05      0.16       1      22 [.      67      88 .]      67      88 .] 0.95

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 5e-16
                 TTSS-HHHHHHHHHHHHHTTS-.HHHHHHHCT.....TTS-HHHHHHHHHHHT CS
   PF00249.26  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                 r +W+  Ede + ++v+++G+++W+ I++ ++       Rt+kqc+ rw+++l
  MMETSP0890-20130614|41039_1  9 RRAWSRKEDEAIQRLVEKHGTKRWAVISQDLNkevpgSLRTGKQCRTRWLNHL 61
                 679**********************************88************97 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 6.9e-05
                 TTSS-HHHHHHHHHHHHHTTS- CS
   PF00249.26  1 rgrWTteEdellvdavkqlGgg 22
                 r +W++ E+ ++++a + lG++
  MMETSP0890-20130614|41039_1 67 REPWSEAEENIIYEAQNVLGNK 88
                 789*****************96 PP

>> PF13837.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.3   2.4e-07   0.00054      14      62 ..      10      59 ..       8      75 .. 0.83
   2 ?   -1.3   0.0      0.94   2.1e+03       1      12 [.      67      78 ..      67      83 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.4e-07
                 HHH--..----TTT..SS--HHHHHHHHHHHHH-..-----HHHHHHHHHH CS
    PF13837.1 14 eawgerllelrfqeggkkknkelWeevaeamaer..gykrspkqCkdKwen 62
                 +aw+++  ++ +q+  +k++++ W  +++ ++++  g  r+ kqC+++w n
  MMETSP0890-20130614|41039_1 10 RAWSRK-EDEAIQRLVEKHGTKRWAVISQDLNKEvpGSLRTGKQCRTRWLN 59
                 588885.466788878999999**********8867889**********55 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.94
                 -SSS-HHHHHHH CS
    PF13837.1  1 rdkWteeetraL 12
                 r++W+e+e    
  MMETSP0890-20130614|41039_1 67 REPWSEAEENII 78
                 578999997655 PP

>> PF13873.1  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   1.8e-06     0.004      38      67 ..      29      59 ..      12      69 .. 0.82
   2 ?    0.6   0.0       0.2   4.6e+02       3      15 ..      68      80 ..      66      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
    PF13873.1 38 rraWeeiaeevnalgpt.qRtadelkkkWed 67
                 ++ W+ i++++n+  p+  Rt ++++++W +
  MMETSP0890-20130614|41039_1 29 TKRWAVISQDLNKEVPGsLRTGKQCRTRWLN 59
                 678**********77766***********87 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.2
    PF13873.1  3 knfteeEkevLve 15
                 + ++e+E++++ e
  MMETSP0890-20130614|41039_1 68 EPWSEAEENIIYE 80
                 5799999999765 PP

>> PF09420.5  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.1e-06     0.016     148     170 ..       7      29 ..       3      34 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.1e-06
    PF09420.5 148 kkerrlsereeewlerLvekHGd 170
                  +++r  s++e+e ++rLvekHG+
  MMETSP0890-20130614|41039_1   7 SQRRAWSRKEDEAIQRLVEKHGT 29 
                  688999****************6 PP

>> PF08914.6  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00015      0.33       1      58 [.       8      62 ..       8      65 .. 0.66
   2 ?    2.5   0.0     0.049   1.1e+02       2      15 ..      67      80 ..      66      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
    PF08914.6  1 gRlayteeeDaailkyvkekerspssvtGnalwkelekksltk.hsWQslkdRYlkhlr 58
                 +R a++ +eD ai + v ++  ++  v    + ++l+k+ + + ++    + R+l hl+
  MMETSP0890-20130614|41039_1  8 QRRAWSRKEDEAIQRLVEKHGTKRWAV----ISQDLNKEVPGSlRTGKQCRTRWLNHLD 62
                 699**************4444444444....4455555544322566677788888876 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.049
    PF08914.6  2 RlayteeeDaailk 15
                 R +++e+e ++i++
  MMETSP0890-20130614|41039_1 67 REPWSEAEENIIYE 80
                 99**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      329  (0.0240638); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 319.51
//
Query:       MMETSP0890-20130614|41049_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      221  (0.0161644); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.62
# Mc/sec: 231.91
//
Query:       MMETSP0890-20130614|41042_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      252  (0.0184318); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.73
# Mc/sec: 1001.22
//
Query:       MMETSP0890-20130614|41050_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       607  (0.0443973); expected 273.4 (0.02)
Passed bias filter:                      388  (0.0283792); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.39s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 252.47
//
Query:       MMETSP0890-20130614|41053_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-12   46.7   0.1    6.4e-12   45.7   0.0    1.6  2  PF13640.1  2OG-Fe(II) oxygenase superfamily
    0.00066   19.8   0.0     0.0011   19.0   0.0    1.4  1  PF03171.15 2OG-Fe(II) oxygenase superfamily
     0.0012   18.0   0.0     0.0015   17.7   0.0    1.3  1  PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
     0.0018   17.4   0.0     0.0036   16.5   0.0    1.4  1  PF09859.4  Uncharacterized protein conserved in bacteria (DUF2086)
  ------ inclusion threshold ------
      0.073   12.3   0.1       0.27   10.5   0.0    1.8  2  PF05899.7  Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.3     9e+03      79      98 ..      30      48 ..      18      50 .. 0.64
   2 !   45.7   0.0   2.3e-15   6.4e-12       7      99 ..      97     187 ..      89     188 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.3
    PF13640.1 79 slHrvtpvgaqgrrlaitgw 98
                 +lH  t + + + r ++ +w
  MMETSP0890-20130614|41053_1 30 VLHDSTVA-QYKSRRCFSAW 48
                 55555555.66667777776 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 2.3e-15
    PF13640.1   7 gpggfls.pHvDnse.....sssrrltlllylndpeweeeGGelelypsdrsegvakevedeevvpkpgrlvlFksdrslHrvtpvgaqgrrlaitgwf 99 
                  ++gg+++ +HvD +      ++ r +t++  l +p++++ GGe++  ++  s ++ ++v       ++g+++ F+ ++++Hrv p+ +qg r +i+ w 
  MMETSP0890-20130614|41053_1  97 EQGGHFKeWHVDADDgghdaEDAREITIVALLAEPNSDFLGGEFQATTD--SYPHGAVVS-----FRKGDIIAFRAKHLWHRVLPT-TQGIRKTIVLWA 187
                  45555557*****99********************************86..677777777.....*********************.********9995 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.2e-07    0.0011       2      97 ..      86     187 ..      85     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4.2e-07
                  -SEEEEEEEES--E-EEEEEEEESS........SCEEEEEEE.......T--EEEEEE-EESCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEEEEEEE CS
   PF03171.15   2 peqlrvnrYpppekglglgpHtDne........nriltillq.......ddggglqfrkedkwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRislaffl 97 
                  +e++++ +Y  ++ g+  + H+D +         r +ti++        + gg++q +++      +p    + +  gd+       r k  +Hrvlp+t+g R +++++ 
  MMETSP0890-20130614|41053_1  86 YEDVQYCEYRGEQGGHFKEWHVDADdgghdaedAREITIVALlaepnsdFLGGEFQATTD-----SYPHGAVVSFRKGDII----AFRAKHLWHRVLPTTQGIRKTIVLWA 187
                  57888889997888888899*************788888777789999999999999966.....4555557888888865....5899*******************997 PP

>> PF12851.2  Oxygenase domain of the 2OGFeDO superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.5e-07    0.0015      70     168 ..      97     187 ..      50     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.5e-07
    PF12851.2  70 kegrpfsgvtacldfcahsHrDrhnmqngstvvvtltrgd..edegllvlplldpdiggvavapthgsvlilcakkelHattpvkspnrnhptRislvfya 168
                    g  f +  +  d   h   D       +t+v++l   +  + +g ++  + d    g  v  ++g+++ ++ak++ H + p+++     + R  +v++a
  MMETSP0890-20130614|41053_1  97 EQGGHFKEWHVDADDGGHDAEDA----REITIVALLAEPNsdFLGGEFQATT-DSYPHGAVVSFRKGDIIAFRAKHLWHRVLPTTQ-----GIRKTIVLWA 187
                  55555555555566666666666....88999999988777799********.999*****************************7.....5665555554 PP

>> PF09859.4  Uncharacterized protein conserved in bacteria (DUF2086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0036      89     137 ..     122     167 ..     109     185 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.3e-06
    PF09859.4  89 lqvvilLsepgedftGGefvlteqrpraqsraevvplkqGdalifavre 137
                  + +v+lL ep++df GGef  t  +     +++vv+ ++Gd++ f +++
  MMETSP0890-20130614|41053_1 122 ITIVALLAEPNSDFLGGEFQATTDS---YPHGAVVSFRKGDIIAFRAKH 167
                  6799***************776554...45679**********998765 PP

>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.59   1.6e+03      16      29 ..      79      92 ..      74      99 .. 0.85
   2 ?   10.5   0.0   9.9e-05      0.27      31      60 ..     135     167 ..     132     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.59
                 SEEEEEE-SSEEEE CS
    PF05899.7 16 pGkfrleyeedEtc 29
                  G +r++ye+ ++c
  MMETSP0890-20130614|41053_1 79 TGALRCTYEDVQYC 92
                 68999999999999 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 9.9e-05
                  EEE-EEEEEE-...---EEEE-TT-EEEE---- CS
    PF05899.7  31 ileGevtvtpe...ggetvelgaGDlvvfpkgl 60 
                  +l Ge ++t +   +g  v +++GD++ f++++
  MMETSP0890-20130614|41053_1 135 FLGGEFQATTDsypHGAVVSFRKGDIIAFRAKH 167
                  678999999888889**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       354  (0.0258923); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.40s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 856.40
//
Query:       MMETSP0890-20130614|41044_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-70  234.6   0.0    1.3e-69  234.1   0.0    1.2  1  PF00069.20 Protein kinase domain
    3.9e-43  147.3   0.0    5.4e-43  146.8   0.0    1.2  1  PF07714.12 Protein tyrosine kinase
     0.0055   16.3   0.7       0.96    9.0   0.1    2.3  2  PF01636.18 Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.013   14.7   0.7      0.045   12.9   0.5    1.9  1  PF10707.4  PhoP regulatory network protein YrbL
      0.093   11.4   0.0       0.15   10.7   0.0    1.3  1  PF07387.6  Seadornavirus VP7


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   0.0   4.9e-73   1.3e-69       1     260 []      95     345 ..      95     345 .. 0.96

  Alignments for each domain:
  == domain 1    score: 234.1 bits;  conditional E-value: 4.9e-73
                  EEEEEEEE----EEEEEEEETTCCEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHH-TTB--EEEEEEESTEEEEEEE--SC-EHHHHHHHHCCB-HHHHHHHHHHHHHHHHHHHHTCEE-S--SGGGEEEETT--EEE------EEECEESS-CSS----GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHC---TTTSTHHHHHHHHHCCCHHTTS--GGGGCSHHHHHHHHHHHHHT-SSGGGS--HHHHHTSGGH CS
   PF00069.20   1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavr.ElkilkklsHpnivkllevfeekdelylvleyveggdlfdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgelkiaDFGlakkleksseklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
                  +e+++ lG+G+fG+Vy a+ +  + +vA+K+l+k++ +++  ++++r E++i ++l H+ni++++++f +++++yl+le+++gg+l++ l++ ++++++e  k++l+++++ley+H++++iHrD+KpeN+Ll  +gelkiaDFG +   + +s + +t++gt +Y++PE+++  ++y++kvD+WslGv++ye+l g++pf+      +++++++i k ++ ++e  +    + ++dli kll k+p+ R++++++ khpw+
  MMETSP0890-20130614|41044_1  95 FEVGRPLGNGKFGRVYLARTRAHKYIVALKVLRKSQLEKNGVEHQLRrEIEIQTHLVHKNILRMYGYFWDEKRIYLILEFAPGGELYKKLNRVRHFTQQETAKYMLEMARALEYCHQKHVIHRDIKPENLLLGLNGELKIADFGWSV--HAPSLRRDTFCGTLDYLPPEMVE-VRNYDEKVDLWSLGVLCYEFLVGEPPFDAP---GKKATFKRISKVDITFPEHVT----AGARDLILKLLVKQPHLRISLQDVAKHPWI 345
                  67899*****************************98777665555555**************************************************************************************************7..8**********************.****************************99...9999******99999998877....99***************************7 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   0.0     2e-46   5.4e-43       2     257 ..      96     341 ..      95     342 .. 0.92

  Alignments for each domain:
  == domain 1    score: 146.8 bits;  conditional E-value: 2e-46
                  EEEEEE-------EEEEEEETTTTSSEEEEEEEEECTTSBHHH..HHHHHHHHHHHHHT-BTTB--BEEEBESSSSEEEEEE---B--HHHHHHHTGTTGSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-----CEESTTTSCEEESTT-EECGGGS-HHHHHHSEEEHHHHHHH---HHHHHHTTT-GTTTTSHHHHHHHHHHTT-BS---TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
   PF07714.12   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkesaeeee..keefleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlefLrkkekekltlkdllkfalqiakGmeyLeskklvHrdLaarNvLleeekvvkisDfGLardiekddyykkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlellkegkrlekpekcpeelyelmkqCweeepeeRptfkelve 257
                  e+g+ lG+G+fG+V+ ++ +     +++ Va+K+l++s+ e++  ++++ +e++i ++l h+ni++++g++ +e+++++++e+++gG+L++ L++   +++t +++ k++l++a+++ey ++k+++Hrd+   N Ll  +   ki+DfG + +        ++++    + +++pE+++ +++ +k D Ws Gvl++E +  ge p+    ++ ++++++ +  ++ pe++++   +l+ + + ++p+ R +++++ +
  MMETSP0890-20130614|41044_1  96 EVGRPLGNGKFGRVYLARTR----AHKYIVALKVLRKSQLEKNgvEHQLRREIEIQTHLVHKNILRMYGYFWDEKRIYLILEFAPGGELYKKLNRV--RHFTQQETAKYMLEMARALEYCHQKHVIHRDIKPENLLLGLNGELKIADFGWSVHA----PSLRRDTFCGTLDYLPPEMVEVRNYDEKVDLWSLGVLCYEFLV-GEPPFDAPGKKATFKRIS-KVDITFPEHVTAGARDLILKLLVKQPHLRISLQDVAK 341
                  67899***************....999********87776666678999**********************************************8..9***************************************************9988....445666677899****************************998.999998887777777775.567999*************************999875 PP

>> PF01636.18  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0016       4.3       2     107 ..      98     211 ..      97     213 .. 0.71
   2 !    9.0   0.1   0.00035      0.96     165     199 ..     211     244 ..     188     247 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0016
                  EEEEE--SSEEEEEEEETT.TEE..EEE......ESSC.CHHHHHHHHHHHHHHHCCSSSB--BEEE..E-CSSCSCEEEEEE---HHBCCT......CSHHHHHHHHHHHHHHHHHHHHH CS
   PF01636.18   2 vrelsgGasnrtyrvttgagryv..lrr......arpa.raaeelrrevallrlLakagipvPevlagdtdddvlgllfalleyvpgevler......klnarqlpallealaellaalhq 107
                   r+l++G   r+y+ +t a +y+  l++         +   + +lrre ++  +L  ++i   + + +  d+  +   + +le+ pg  l+       + +++++  +  ++a++l   hq
  MMETSP0890-20130614|41044_1  98 GRPLGNGKFGRVYLARTRAHKYIvaLKVlrksqlE--KnGVEHQLRREIEIQTHLVHKNI--LRMYGYFWDEKRI---YLILEFAPGGELYKklnrvrHFTQQETAKYMLEMARALEYCHQ 211
                  5899***************9999554554444331..14467778899999988888877..5666543344444...5788888888888888888877777777777777777766665 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00035
                  --EEB-SS-SGGGEEEETTTTEEEE---TT-BBE- CS
   PF01636.18 165 ppvllHgDlhpgNllvdpddgrvgviDfedaglgp 199
                  ++ ++H+D++p Nll+   +g++ + Df+ +  +p
  MMETSP0890-20130614|41044_1 211 QKHVIHRDIKPENLLLG-LNGELKIADFGWSVHAP 244
                  5678*************.44444489999888877 PP

>> PF10707.4  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   1.7e-05     0.045      49     155 ..     125     230 ..     108     236 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-05
    PF10707.4  49 llpekrlkqirrElkeylelslrretvwspiariyGfveTdlGlGlvverirdadGnvsetLeell.kedgltaalaeaLeefleallenrIvardlkpknivvgrrs 155
                  +l++++l+++  E +  +e +++   v+++i r+yG+   ++ + l+ e    + G++ + L+++   +++ ta++  ++ + le++ +++++ rd+kp+n+++g ++
  MMETSP0890-20130614|41044_1 125 VLRKSQLEKNGVEHQLRREIEIQTHLVHKNILRMYGYFWDEKRIYLILE--FAPGGELYKKLNRVRhFTQQETAKYMLEMARALEYCHQKHVIHRDIKPENLLLGLNG 230
                  4445555555555555555555788888888888888888877777766..46778888888887732344444677788999********************98766 PP

>> PF07387.6  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.6e-05      0.15     151     187 ..     203     237 ..     190     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.6e-05
    PF07387.6 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   ++L+  h  +++++h D++penl+   nG lk+ D 
  MMETSP0890-20130614|41044_1 203 ARALEYCH--QKHVIHRDIKPENLLLGLNGELKIADF 237
                  57888899..899*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       448  (0.0327677); expected 273.4 (0.02)
Passed bias filter:                      304  (0.0222352); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.76
# Mc/sec: 1103.59
//
Query:       MMETSP0890-20130614|41046_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-11   42.0   1.7    2.9e-10   40.0   0.0    2.6  2  PF05697.8  Bacterial trigger factor protein (TF)
    9.6e-09   35.1   9.0    1.2e-07   31.5   5.0    2.5  2  PF05698.9  Bacterial trigger factor protein (TF) C-terminus
    3.2e-05   23.7   0.1    9.3e-05   22.2   0.1    1.8  1  PF00254.23 FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.063   11.9   0.1       0.14   10.7   0.0    1.5  1  PF06273.6  Plant specific eukaryotic initiation factor 4B
       0.48   10.0   2.2          1    8.9   0.0    2.1  2  PF09323.5  Domain of unknown function (DUF1980)


Domain annotation for each model (and alignments):
>> PF05697.8  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.1e-13   2.9e-10       8     114 ..      52     168 ..      46     201 .. 0.89
   2 ?   -0.3   0.2      0.27   7.3e+02      82     143 ..     398     462 ..     360     464 .. 0.53

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.1e-13
    PF05697.8   8 leglevklevevpaeeiekkvdkalkklakkvkipGFRk...GkvPrkvvkkrygke.ireealnellqealeealkeekleplgqpei......eekelkeekdlefevevevyPe 114
                  +++++vkl++ v+ +  ++++++a ++la++  ipG R     k+P +vv++ +g+e ++++a++ l +  +  a++  ++  +gq ++         +++++ ++++ v v+v Pe
  MMETSP0890-20130614|41046_1  52 EKSSSVKLTIPVSGAATKAAFKAAASELARSRPIPGWRAkdaEKIPASVVAREIGPEiVKAKAIEALSETEVHGAISRLSIPAVGQARFleapkdIARDFEPGSPFTLCVCVDVWPE 168
                  567788********************************99999***********************************888888888777767668999*****************9 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.27
    PF05697.8  82 ekleplgqpeieekelkeekdlefevevevyPevelkdykglev....ekpevevteedvdeelek 143
                   + +  g+p+ +++ + + + +e  ++  ++P+v+ +  ++l v    +  +++ +++++d++l +
  MMETSP0890-20130614|41046_1 398 ADMRSRGTPDADIQRMISSEGFEK-YKKVTLPQVQDELRTKLAVqyiaKDRNIKLEQAEIDDQLAQ 462
                  345555666667777777776663.33344577766666666664444556667777777777765 PP

>> PF05698.9  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.032        89      19      44 ..     187     213 ..     184     214 .. 0.91
   2 !   31.5   5.0   4.5e-11   1.2e-07       1     161 [.     333     495 ..     333     496 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.032
                  CCHHHHHHCCCHHHGGCG--E.EE-HH CS
    PF05698.9  19 eatkeelkeaildkLvekaei.elPes 44 
                  ++++++++ +++d+L e++ +  lPes
  MMETSP0890-20130614|41046_1 187 TESDQSVRAQAMDALCERYALkSLPES 213
                  67899****************999998 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 4.5e-11
                  SHHHHHHHCHHHHHCCHHCCH......HHHHHCCCHHHGGCG--E.EE-HHHHHHHHHHHHHHHHHC-......HHHHHHHHHT.HCCCHCHHCHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHCCT----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH CS
    PF05698.9   1 tLeeLkeklrkqleeekkeat......keelkeaildkLvekaei.elPeslveeeierllrqflqqleqqgldleeylslsgs.seeelreelkeeAekrvklgLileeiakeekievteeeikeeieelasqygmepeevkefykkneqlsalkedlleekvvdlll 161
                  tL+ L++++ + +++++k+a       ++ ++++i + L++++    lP+++v e +++ ++ +l +++  g++  ++  + +s   e++++   +++++ ++++L ++ iak+ +i+ +++ei+++++++  qy+       + +++++  +++ ++l++ kv+d++ 
  MMETSP0890-20130614|41046_1 333 TLDGLERQIDETVSAAQKQAGtdnaadADDVNREIEKVLAQRVAQtHLPDAMVTEACRQKFAVMLADMRSRGTPDADIQRMISSeGFEKYKKVTLPQVQDELRTKLAVQYIAKDRNIKLEQAEIDDQLAQVKAQYK------DSTIDDEKAIEKISDELTRIKVCDFIR 495
                  5666666666666666655431111115668899999999998888***************************99999887777799*************************************************......99999999999************9985 PP

>> PF00254.23  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   3.4e-08   9.3e-05      31      94 .]     254     312 ..     215     312 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.4e-08
                  TTCEEEEECCTTSS-HHHHHHHTTSBCTEEEEEEEEGGGT-S-TTCCTTTS.TT-EEEEEEEEE CS
   PF00254.23  31 rakpfefkvGsgqvikgleeglegmkvGekrtltippelaYgekglaggkippnatlvfevell 94 
                   + ++e+++++g++++g  e+++g+kvG+ + + + +++    ++       +++t++f++el+
  MMETSP0890-20130614|41046_1 254 GGDNLELILEEGKFLPGVAEAIIGLKVGDFVDVPVAFPENMPREK-----SLAGKTVIFQIELK 312
                  67899****************************999977766444.....5789********95 PP

>> PF06273.6  Plant specific eukaryotic initiation factor 4B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.3e-05      0.14     331     414 ..     290     373 ..     287     388 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.3e-05
    PF06273.6 331 FGdAkPREvvLeEkGkDWrkideeLEhrrvdrPeteeeknlkeeieelkkklkkeeakaeeskesdeekelselirkkEkeler 414
                  F +  PRE  L+ k   ++   +++E rr+ +Pe     +l   ++ l+++++++ + a+++++ d+  + +++ r+ Ek l +
  MMETSP0890-20130614|41046_1 290 FPENMPREKSLAGKTVIFQIELKKIELRRIPSPEEVATTMLNTTLDGLERQIDETVSAAQKQAGTDNAADADDVNREIEKVLAQ 373
                  6677899999998888877656789*************************************9*99999999999999998765 PP

>> PF09323.5  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00038         1      72     131 ..       7      62 ..       2      83 .. 0.64
   2 ?    0.1   0.3      0.18   5.1e+02     124     155 ..     439     470 ..     414     482 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00038
    PF09323.5  72 kkllsylllviPliigflvpaatLdssiaakkGisfllaqssksitsedeesseqklkpd 131
                  k ++ ++ll+ +l++gf++p+++ + ++ a    + ++   +++i ++ e+ss+ kl   
  MMETSP0890-20130614|41046_1   7 KFKMKVVLLLCSLVTGFVLPPKNVNRNVYAVI--ERSS--TNEPIAEKIEKSSSVKLTIP 62 
                  678999*******************8776532..2222..22344455555555555544 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.18
    PF09323.5 124 seqklkpdtslyyaksayekqmeklkkkyikq 155
                    q++ +d+++ ++++++++q  + k +y+++
  MMETSP0890-20130614|41046_1 439 AVQYIAKDRNIKLEQAEIDDQLAQVKAQYKDS 470
                  569999999*****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       853  (0.0623903); expected 273.4 (0.02)
Passed bias filter:                      429  (0.031378); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.42s 00:00:01.34 Elapsed: 00:00:00.72
# Mc/sec: 1734.03
//
Query:       MMETSP0890-20130614|41063_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0048   16.7   0.1      0.023   14.5   0.0    1.9  2  PF02607.12 B12 binding domain


Domain annotation for each model (and alignments):
>> PF02607.12  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-06     0.023       5      51 ..      13      59 ..       9      64 .. 0.91
   2 ?   -0.2   0.0     0.069   9.5e+02      45      65 ..     140     160 ..     119     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.7e-06
   PF02607.12  5 eerlleaildgdkekaeelleealsa.ghgpldiindvlmpamrevGd 51
                  +++++ai+++ +  +e+ll++a+ + ++ p d+  d l+p +r+v d
  MMETSP0890-20130614|41063_1 13 TQSMTKAIVHLIQGDVEALLDDAI-TlDFLPTDVDRDALIPILRRVFD 59
                 57899*******************.77******************966 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.069
   PF02607.12  45 amrevGdlwergeislpqehl 65 
                  a+r+  +l++++   l+ ++ 
  MMETSP0890-20130614|41063_1 140 ALRRAQELFGKNITALAFVLR 160
                  788899999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       423  (0.0309391); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.41s 00:00:00.88 Elapsed: 00:00:00.64
# Mc/sec: 722.65
//
Query:       MMETSP0890-20130614|41066_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-23   80.4  11.5    9.5e-23   80.4   7.9    1.6  2  PF07884.9  Vitamin K epoxide reductase family
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.26   10.8   0.0    1.4  1  PF00085.15 Thioredoxin


Domain annotation for each model (and alignments):
>> PF07884.9  Vitamin K epoxide reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   7.9   1.4e-26   9.5e-23       4     133 ..      29     153 ..      26     157 .. 0.91
   2 ?   -2.6   0.1       0.6   4.1e+03       6      28 ..     177     199 ..     173     209 .. 0.73

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 1.4e-26
    PF07884.9   4 iililaliGllaslyltlekltllepeyralcdinsvvsCskVlkSpwakifgiplsllGilaylvvlllavlllarv.tlsrwawlllllgslvgvvfslyLiyilvfvikalClyCilsavlslvllil 133
                  +  +lal+G+  ++ylt++klt  +      c   +   C++Vl+ p+++ifg+p+s +G++ y+++l+l+++++  + + +r + l ll++s+++++fs+yL+++lvf+++  C +C+lsa+ls + +++
  MMETSP0890-20130614|41066_1  29 VTSGLALVGVCETSYLTWQKLTGGS---ILQC---GTAECGSVLTGPYSSIFGVPVSAMGLASYALLLALSAAPFVLQqDTERFTRLPLLILSTFMAAFSVYLVLLLVFKLHTTCAFCFLSAALSWSSFFI 153
                  56689********************...6666...689***********************************999884667777789*************************************999987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.6
    PF07884.9   6 lilaliGllaslyltlekltlle 28 
                  +++a+++ ++sly+t  +++l e
  MMETSP0890-20130614|41066_1 177 VAAAFLAGAVSLYVTELNIALDE 199
                  67788888888888877766655 PP

>> PF00085.15  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.8e-05      0.26      27      78 ..     276     327 ..     271     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.8e-05
                  -TT---HHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTT--SSSEEEE CS
   PF00085.15  27 ApwCGhCkalaPeyeklaeelkekvvlakvdvdenkdlaseygvegiPtlkl 78 
                  A wC hC + + ++ + a +l + + +a    ++++ ++++  ++g+Pt  +
  MMETSP0890-20130614|41066_1 276 AYWCSHCYNQKQIFGAQAAKLLNYIECAPDGENSQRGMCQDRRINGYPTWEI 327
                  89********************99999999999999*************754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       602  (0.0440316); expected 273.4 (0.02)
Passed bias filter:                      330  (0.0241369); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.65
# Mc/sec: 1353.02
//
Query:       MMETSP0890-20130614|41065_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-16   60.6   0.2    1.7e-16   60.2   0.2    1.1  1  PF02636.12 Putative S-adenosyl-L-methionine-dependent methyltransferase
  ------ inclusion threshold ------
      0.051   13.9   0.3       0.25   11.7   0.1    2.2  3  PF08241.7  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF02636.12  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.2   2.5e-20   1.7e-16      36     244 ..       2     233 ..       1     240 [. 0.75

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 2.5e-20
   PF02636.12  36 vlrtlrkfepeflesleyhlvEaspklrelQkellkekakk..a....akklgvkvrWleelkevpepgfilanEffDaLPvdlfqrtedg...wrellveltpaede..........efeltlspkstpplseylpelskrlkkleegariEispeaealaeklaeriakggaaLiiDYge.ksee..........pngtlraikkhklvk.dpleep.GeaDltahvdFtalaeaaeea 244
                  +l++lr  +p+++++++y   ++s++l +    + +++++   +    a ++++  +++++    + p+f+la E+ D+LP+d++++t  +   w+     +  +++e          +++ +  +++t+++ ++++ l  r +   +   +++++ a ++++ + +++++ + +L++D++  +++            n++l   ++      ++l++  G+aD+++ +dF  ++ a+ ++
  MMETSP0890-20130614|41065_1   2 FLDYLRSAAPQVYQNINYIDADVSQNLLKDATIRNERHEHRfqTrhidACSFSA--NFFDQD--TKIPTFVLAFELCDNLPHDKLRYTCTNnnfWKATHQAFVLDDEEyfepiqdmwiQLAAEIFQPPTKSIFDHISTLLGRRR---DHFDVFVPTGALQWLAGIRDTLPR-HRLLLADFDSlPAPHlasdlqrdiaRNAPLVTARNSGNDLpSYLAAQdGSADIFFATDFRLIQAAY-SH 233
                  699***********************9877666665544446312333222222..256643..3479******************8876655764444433322333555555566677777777777677777777777666...999*********************.**********99988999999999999999555555544438998888****************99.43 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.7e-05      0.25      17      62 ..      12      59 ..       2      80 .. 0.85
   2 ?   -1.4   0.0      0.44     3e+03      59      76 ..     142     159 ..     133     170 .. 0.80
   3 ?   -3.5   0.0         2   1.4e+04      54      67 ..     209     222 ..     203     225 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.7e-05
    PF08241.7 17 r..paarvtgvDlseemlatakerlkeeglelvvadaeelpfednsfD 62
                 +  ++ +++  D+s++ l+ a+ r++++++++++  +    f  n fD
  MMETSP0890-20130614|41065_1 12 QvyQNINYIDADVSQNLLKDATIRNERHEHRFQTRHIDACSFSANFFD 59
                 3467899************************99999999999999999 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.44
    PF08241.7  59 nsfDvvvssevlehledp 76 
                  + fDv v + +l++l+  
  MMETSP0890-20130614|41065_1 142 DHFDVFVPTGALQWLAGI 159
                  689*********999654 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2
    PF08241.7  54 lpfednsfDvvvss 67 
                  l  +d+s D+ +++
  MMETSP0890-20130614|41065_1 209 LAAQDGSADIFFAT 222
                  55689999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       234  (0.0171153); expected 273.4 (0.02)
Passed bias filter:                      214  (0.0156524); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.67
# Mc/sec: 1015.77
//
Query:       MMETSP0890-20130614|41071_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-18   65.5   0.0    3.8e-18   65.3   0.0    1.1  1  PF00227.21 Proteasome subunit
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.16   11.9   0.0    1.2  1  PF06979.7  Protein of unknown function (DUF1301)


Domain annotation for each model (and alignments):
>> PF00227.21  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   5.6e-22   3.8e-18      18     179 ..       2     160 ..       1     172 [. 0.85

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 5.6e-22
                  EEEEECEEETTTEEESSSSSSEEEE.ETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHSSGGHHHHHHHHHHHHHHHHHHHHTSSCT...TCEEEEEEEETTTSSEEEEEE----EEEESSSEEEE-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHHHHHHBT CS
   PF00227.21  18 laadkratagskllskstveKifki.ddhigmafaGlaaDartlverarseaqlyrlrygrpisverlvkrlaallqaytqrsgrrpf...gvslliagvdeeggpqlyqidpsGsvieeknavaiGsgseaaktlleklykedltleeavelavkalkealerdk 179
                  +aad    +g    ++++ +Ki +  d + ++a++G++++++++++ +++ + l+rlr+ r++++     +++  +++++ + +r       + ll++ +  +g+ +l ++d +G+++   +++a+G gs  +++ l++ yk+dlt+eea+ l++++l+ ++er +
  MMETSP0890-20130614|41071_1   2 IAADATFRRGLVA-MDDEHDKILQMeDGRQLLAAVGDTGEIDQFCQSIKYSVALHRLRTSRRPKPI----EICHFIRRQIVSFRRDQKvipNLKLLFGAFF-NGATSLIWLDETGALLNL-PFAAHGMGSALVIGHLDQVYKSDLTKEEAIILMQHCLTLLHERYA 160
                  6777777766666.55668******999*********************************99999....6666666666655554442226788888888.999***************.7***************************************99855 PP

>> PF06979.7  Protein of unknown function (DUF1301)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.16      58     113 ..      49     104 ..      44     109 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.4e-05
    PF06979.7  58 kyvirlyydaekdtytavtysvllaekktkfkqedvtiPevaklfttflakkksll 113
                  ky + l+   ++ + + + +  ++ ++   f++++ +iP+ + lf +f+    sl+
  MMETSP0890-20130614|41071_1  49 KYSVALHRLRTSRRPKPIEICHFIRRQIVSFRRDQKVIPNLKLLFGAFFNGATSLI 104
                  78899999999999999********************************9998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       227  (0.0166033); expected 273.4 (0.02)
Passed bias filter:                      219  (0.0160181); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.54
# Mc/sec: 985.17
//
Query:       MMETSP0890-20130614|41068_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   14.0   0.0       0.11   12.5   0.0    1.8  1  PF00856.23 SET domain


Domain annotation for each model (and alignments):
>> PF00856.23  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.3e-06      0.11       1     136 [.       1     127 [.       1     157 [. 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.3e-06
                  ----EESS-B----EEE.EECCCEEECCCCHH..............................................----TTCHHHHHHHHHHHTHHHHHHH.TTTS.GGG..HHHHHHHHHHHHHH.EE--SS-TCCEECCEECEE-TCGGGTEE-SS.SEEEEE CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF00856.23   1 GrGvfAtedipkGefvc.eyvgelltddeaek...............................addagtilqakkelaadeakkstakskrqkagksvlsfaalsarsgmlksalaasvaasesaavpkatsdeleeeeseyvidakllgpvarflNHSCdpNltvqf 136
                  GrG+ +++++++ e+v+ ++  e+++ d++                                  d++ t l++ + l+ ++ +++                                        a+   +++ l e   +++++  +l+p+ ++ NH  d  ++v+f
  MMETSP0890-20130614|41068_1   1 GRGLWTRRNVEALEVVMsVPLTECIRGDSVIDcaqklhalkseepnhpwfaylddvkdlpllkEDEELTGLGGGPSLTLEKRRLQ----------------------------------------AQDLLFEYALVESRAYWINNELVLIPLLDLANHRTD-AAYVEF 127
                  9*************999********************************998777666666664444444444444444444444........................................77777899999**********************885.555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       167  (0.0122147); expected 273.4 (0.02)
Passed bias filter:                      154  (0.0112639); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.45s 00:00:00.97 Elapsed: 00:00:00.93
# Mc/sec: 706.02
//
Query:       MMETSP0890-20130614|41075_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.43s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 225.11
//
Query:       MMETSP0890-20130614|41077_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       107  (0.00782621); expected 273.4 (0.02)
Passed bias filter:                      100  (0.00731422); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.45s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 225.74
//
Query:       MMETSP0890-20130614|41082_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-05   23.6   6.9      0.018   14.3   0.0    3.3  4  PF07883.6  Cupin domain
  ------ inclusion threshold ------
      0.031   13.5   0.0       0.18   11.1   0.0    2.0  2  PF05899.7  Protein of unknown function (DUF861)
       0.04   13.4   0.2        4.4    6.8   0.1    2.5  2  PF02311.14 AraC-like ligand binding domain
       0.11   12.6   0.4       0.42   10.7   0.0    2.0  2  PF02373.17 JmjC domain, hydroxylase
        0.2   10.9   0.9         17    4.7   0.6    2.9  2  PF00190.17 Cupin


Domain annotation for each model (and alignments):
>> PF07883.6  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   3.5e+03      11      19 ..      54      62 ..      53      67 .. 0.76
   2 !   14.3   0.0   6.8e-06     0.018      19      70 ..     111     166 ..      95     167 .. 0.84
   3 ?   -1.1   0.0      0.45   1.2e+03       5      17 ..     240     252 ..     237     255 .. 0.83
   4 !   11.6   0.1   4.9e-05      0.14      43      65 ..     293     315 ..     288     320 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.3
                 E-EBE-TT- CS
    PF07883.6 11 apshrHpge 19
                 +p+h H+  
  MMETSP0890-20130614|41082_1 54 HPPHLHETG 62
                 689999976 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6.8e-06
                  -EEEEEEEE--EEEE.E-TEEEEE-TT-EEEE-TT...-EBEEB--SSS.-EEEEEE CS
    PF07883.6  19 edeffyVleGegelt.vdgeeveleaGdsvyfpag...tpHrfrNtgde.parllvv 70 
                  + + fyV++G g+ t ++   +  ++Gd+++ p++   + H+   + +  +a l+++
  MMETSP0890-20130614|41082_1 111 S-QAFYVIRGDGTSTsMEHGSISWSTGDLFVLPKTdgiVKHTCQHADEHgAAALYWI 166
                  5.99**************99**************98999999955444438888887 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.45
                  E----EE-EBE-T CS
    PF07883.6   5 lppGesapshrHp 17 
                  ++p+++  +hrH 
  MMETSP0890-20130614|41082_1 240 IAPNTVQRPHRHN 252
                  899999999*996 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 4.9e-05
                  TT-EEEE-TT-EBEEB--SSS-E CS
    PF07883.6  43 aGdsvyfpagtpHrfrNtgdepa 65 
                  +G ++++p+g +H ++N+++  a
  MMETSP0890-20130614|41082_1 293 PGGVFVTPPGWWHSHHNESNSIA 315
                  7999***************8754 PP

>> PF05899.7  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.5e-05      0.18      25      59 ..     110     144 ..     102     158 .. 0.85
   2 ?   -0.6   0.0      0.28   7.6e+02      50      61 ..     293     304 ..     291     314 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.5e-05
                  SEEEEEEEE-EEEEEE----EEEE-TT-EEEE--- CS
    PF05899.7  25 edEtcyileGevtvtpeggetvelgaGDlvvfpkg 59 
                  +++ +y+++G  t t  +   +  + GDl+v+pk 
  MMETSP0890-20130614|41082_1 110 TSQAFYVIRGDGTSTSMEHGSISWSTGDLFVLPKT 144
                  58999***********99999************96 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.28
                  TT-EEEE----E CS
    PF05899.7  50 aGDlvvfpkgls 61 
                  +G+++v p+g++
  MMETSP0890-20130614|41082_1 293 PGGVFVTPPGWW 304
                  699999999995 PP

>> PF02311.14  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0016       4.4      28      94 ..     115     184 ..     111     217 .. 0.73
   2 ?    4.2   0.0     0.011        29      47      69 ..     293     316 ..     288     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0016
                  EEEE----E.E----EE------EEEE----...-EEE---TTS.EEEEEEEEE---GGGGGGG----SBTT CS
   PF02311.14  28 yvteGtgrl.rlngrtydlgpGdlfLlppge...pHdyesdsed.gweyrwlyfegelleriledssilaga 94 
                  yv++G g+  + + +    ++Gdlf lp+ +    H+++ ++e+   +++w++  +  l  +l+ ++  +++
  MMETSP0890-20130614|41082_1 115 YVIRGDGTStSMEHGSISWSTGDLFVLPKTDgivKHTCQHADEHgAAALYWIHDGP--LLHYLGVAPTKKRF 184
                  899999999888999999***********964448*********999999998655..44444444444444 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.011
                  ---EEEE-----EEE---TTS.EE CS
   PF02311.14  47 pGdlfLlppgepHdyesdsed.gw 69 
                  pG +f  ppg +H+ + +s+   w
  MMETSP0890-20130614|41082_1 293 PGGVFVTPPGWWHSHHNESNSiAW 316
                  899****************75444 PP

>> PF02373.17  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.71     2e+03      11      45 ..     151     184 ..     150     214 .. 0.63
   2 ?   10.7   0.0   0.00015      0.42      73     108 ..     279     314 ..     268     317 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.71
                  E-CE--GGG-EEEEEEEEE-EEEEEEE-TTCHHHH CS
   PF02373.17  11 tpwhiedqglySinylhfgapkvWyivpsekkekl 45 
                  t+ h++++g   + y + ++p   y+    +k+++
  MMETSP0890-20130614|41082_1 151 TCQHADEHGAA-ALYWIHDGPLLHYLGVAPTKKRF 184
                  78899999999.56666666665555544445555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00015
                  HHHCCG--EEEEE----EEEE----EEEEEEEEEEE CS
   PF02373.17  73 lekagipvyrfvqkpgefVfvfpgayHsvfnlgfni 108
                   e + i ++r+   pg + +++pg++Hs +n   +i
  MMETSP0890-20130614|41082_1 279 SEGNIIHPIRCDWIPGGVFVTPPGWWHSHHNESNSI 314
                  66777899999999***************9987766 PP

>> PF00190.17  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.032        88      55      98 ..     111     143 ..     105     157 .. 0.78
   2 ?    4.7   0.6    0.0063        17      90     116 ..     293     317 ..     201     323 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.032
                  EEEEEEEE-EEEEEEEES.......EEEEEEEEE----EEEE-T CS
   PF00190.17  55 peilyvlqGrgrlgvvvpgcpeqsrrdehqkvrlreGdviviPa 98 
                  ++ +yv++G g+  +            eh  +  + Gd++v+P+
  MMETSP0890-20130614|41082_1 111 SQAFYVIRGDGT-STS----------MEHGSISWSTGDLFVLPK 143
                  577899999998.222..........356677899999999997 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0063
                  ---EEEE-TT-EEEEEEESSSSEEEEE CS
   PF00190.17  90 eGdviviPagvahwlyndgdnelvavv 116
                  +G v+v P+g  h  +n   ++ +a+v
  MMETSP0890-20130614|41082_1 293 PGGVFVTPPGWWHSHHNE--SNSIAWV 317
                  799**************9..6677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      242  (0.0177004); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.70
# Mc/sec: 1300.88
//
Query:       MMETSP0890-20130614|41085_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   20.9   8.0    0.00051   20.0   5.6    1.4  1  PF05835.7 Synaphin protein


Domain annotation for each model (and alignments):
>> PF05835.7  Synaphin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   5.6   3.7e-08   0.00051      32      77 ..     152     197 .]     143     197 .] 0.92

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.7e-08
                  -----------------HHHHHHHHHHHHHHHHHHHHHHH------ CS
    PF05835.7  32 aeeeeeevqealreaeerRkekyrkmeeERekmRqgiRDKYgikKk 77 
                   + e++ ++++lr+a+++R+ + r ++   +++R +iR KY++ Kk
  MMETSP0890-20130614|41085_1 152 HHREQQRMERQLRQAQQERERQIRDRKSSNAQLRDNIRSKYNLDKK 197
                  467889999***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1372  (0.100351); expected 273.4 (0.02)
Passed bias filter:                      684  (0.0500293); expected 273.4 (0.02)
Passed Vit filter:                        62  (0.00453482); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.57
# Mc/sec: 813.94
//
Query:       MMETSP0890-20130614|41091_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-51  172.5   0.0    1.1e-50  172.1   0.0    1.1  1  PF04104.9 Eukaryotic and archaeal DNA primase, large subunit


Domain annotation for each model (and alignments):
>> PF04104.9  Eukaryotic and archaeal DNA primase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   8.3e-55   1.1e-50      86     260 .]      32     235 ..       5     235 .. 0.87

  Alignments for each domain:
  == domain 1    score: 172.1 bits;  conditional E-value: 8.3e-55
                  ..............TTSSTTGGSHHHHTTXXHHHHHHH...TTTSXXXXXXXHHHHHHHXXXXXXHHHHHHHHHHHST....HHHHHHHTHHHHHHHXXXXXXXXXXXXXXHHHHHHS..........XXXXXHHHH..HHHHHHHHH.....HHHHHHHHH......HHHHHHHHHHHHHS........XXXXXX.XSHHHHH CS
    PF04104.9  86 d.......vqeeedskisaknidklakelfPpCmrelleglkknghlkhegrlqltlFlkdiglsldeilelwkeaftr..teekFdkeyrynirhnyGkegkrtnysppsCekiltkppp.gkg...eahgCpfrh.dpdklktlLq...ldeediedile...kgeyqvaCtkvFelthk........cerdei.khPlqYy 260
                  d       +++++ ++i+ +++d+la++++P+Cmr ++++l+++++lkh+gr+q++lFlk  gls d+++++++++ft+  + ++F+k+y+y irh yG+eg rt+ys++ C ki+ + p    g    +hgCp++h ++d+l++lL    +d+++ ++il+    ++yqvaC+ +F++th          +  ++ +hP+ ++
  MMETSP0890-20130614|41091_1  32 DearkalaQNNTNLEQINIDQLDQLAETSMPLCMRLVHQTLRRDHKLKHWGRVQYGLFLKVAGLSIDDQIAFFQSEFTKliSPDEFTKNYAYGIRHRYGQEGARTDYSAYGCYKIIMDLPGpVPGevgGQHGCPYKHmTSDALSALLAktsIDASNQRAILQqakTNNYQVACQLHFQATHTnsesmtgeVDLAGVgNHPNAFF 235
                  3455545445556677888889**********************************************************************************************9987655553348899***********99999999999999999999999*********************9997777899*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       646  (0.0472499); expected 273.4 (0.02)
Passed bias filter:                      402  (0.0294032); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.79
# Mc/sec: 988.88
//
Query:       MMETSP0890-20130614|41098_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       185  (0.0135313); expected 273.4 (0.02)
Passed bias filter:                      181  (0.0132387); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.40s 00:00:00.71 Elapsed: 00:00:00.73
# Mc/sec: 246.20
//
Query:       MMETSP0890-20130614|41103_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-12   45.7   0.0    1.4e-11   44.5   0.0    1.6  1  PF08241.7  Methyltransferase domain
    3.2e-05   23.4   0.0    6.1e-05   22.5   0.0    1.6  2  PF13847.1  Methyltransferase domain
    4.8e-05   22.4   0.0    6.1e-05   22.1   0.0    1.3  1  PF01209.13 ubiE/COQ5 methyltransferase family
    4.9e-05   23.6   0.1    0.00043   20.5   0.0    2.3  3  PF08242.7  Methyltransferase domain
    0.00013   21.2   0.0    0.00017   20.8   0.0    1.2  1  PF07021.7  Methionine biosynthesis protein MetW
    0.00025   21.2   0.0      0.001   19.2   0.0    1.9  2  PF13649.1  Methyltransferase domain
    0.00059   19.4   0.0    0.00084   18.9   0.0    1.4  1  PF13489.1  Methyltransferase domain
     0.0062   15.9   0.0       0.01   15.1   0.0    1.4  1  PF01555.13 DNA methylase


Domain annotation for each model (and alignments):
>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   8.3e-15   1.4e-11      18      95 .]      60     136 ..      47     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 8.3e-15
    PF08241.7  18 paarvtgvDlseemlatakerlkeeglelvvad..ae.elpfednsfDvvvssevlehledpekalkeiaRvLkpgGllvi 95 
                  +  rv+++ l++e la  k+++ +    + v d  +e elpf+dnsfD v+++  + +l++p ++++ei+RvLk +Gl +i
  MMETSP0890-20130614|41103_1  60 ELDRVFAIGLNAEELAANKRANGN----FLVRDlnLEpELPFPDNSFDKVFMVVSVDYLTQPLQVFEEIYRVLKHDGLACI 136
                  557888888888877755555555....444443343379*************************************9876 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   1.9e+03      95     111 ..      33      49 ..       2      64 .. 0.48
   2 !   22.5   0.0   3.6e-08   6.1e-05      44     115 ..      70     141 ..      39     178 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
    PF13847.1  95 eiervlkpggrlivesp 111
                    ++ l+p+ +++    
  MMETSP0890-20130614|41103_1  33 HYRNILRPKDEVLDLCS 49 
                  33344444444444444 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 3.6e-08
    PF13847.1  44 AkeraqklgfenveFiqgdieelekl.le.esfDlvisnevlnaladpqkvlkeiervlkpggrlivespslla 115
                    e+++ ++  n +F + d++  ++l ++ +sfD v+    ++ l+ p +v++ei rvlk++g  +++  +  +
  MMETSP0890-20130614|41103_1  70 NAEELAANKRANGNFLVRDLNLEPELpFPdNSFDKVFMVVSVDYLTQPLQVFEEIYRVLKHDGLACISFSN--R 141
                  5555666777799*********99999***********9999*********************99998777..3 PP

>> PF01209.13  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.6e-08   6.1e-05     108     161 ..      93     145 ..      30     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.6e-08
   PF01209.13 108 eeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpl 161
                   eLpf d+sfD v +   +  +t  l++++e+yrvlk  G l ++ fs+   p+
  MMETSP0890-20130614|41103_1  93 PELPFPDNSFDKVFMVVSVDYLTQPLQVFEEIYRVLKHDG-LACISFSNRCFPT 145
                  48************************************99.79****9876654 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.6   7.8e+03      76      94 ..      19      39 ..       5      41 .. 0.56
   2 !   20.5   0.0   2.5e-07   0.00043      37      98 ..      71     133 ..      59     134 .. 0.71
   3 ?    0.1   0.0       0.6     1e+03      66      90 ..     178     202 ..     153     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4.6
    PF08242.7 76 lhhl..kdirevldnirklLk 94
                 + h+  + i+++ ++ r+ L+
  MMETSP0890-20130614|41103_1 19 VKHIddNAINALTEHYRNILR 39
                 444443344455555555555 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.5e-07
    PF08242.7  37 keklakrennn.nnnvnlealdlldldgg..ssfDvvvasnvlhhlkdirevldnirklLkpgGv 98 
                  +e+la++++ n n  v+  +l+ +       +sfD v++   + +l ++ +v+++i+++Lk +G 
  MMETSP0890-20130614|41103_1  71 AEELAANKRANgNFLVRDLNLEPELP--FpdNSFDKVFMVVSVDYLTQPLQVFEEIYRVLKHDGL 133
                  45555555433033334444443333..256********************************95 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.6
    PF08242.7  66 sfDvvvasnvlhhlkdirevldnir 90 
                  ++D++ as++   +++++++l+ni 
  MMETSP0890-20130614|41103_1 178 AYDLIPASSTSPFFNPLNFFLNNIL 202
                  7999999999999999999999986 PP

>> PF07021.7  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     1e-07   0.00017       8     113 ..      35     142 ..      29     166 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1e-07
    PF07021.7   8 aelikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigrr...aivsfPnfG 113
                   ++++p+ +vldl +   + l    e   v + Gl+ +e + ++  +    v + +l+ +l  f+d+sfd v +  ++  + +p +v++e+ r+ ++   a +sf n  
  MMETSP0890-20130614|41103_1  35 RNILRPKDEVLDLCSSWISHLPQEIELDRVFAIGLNAEELAANKRANGNFLVRDLNLEPELP-FPDNSFDKVFMVVSVDYLTQPLQVFEEIYRVLKHdglACISFSNRC 142
                  5789999******99888877777788999********999999999999999999999995.9******************************886444778888855 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   2.2e+03      76      99 ..      17      40 ..      10      41 .. 0.80
   2 !   19.2   0.0   6.1e-07     0.001      25     101 .]      62     132 ..      44     132 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.3
    PF13649.1 76 lslehlspkqlealleeiarvlkp 99
                  ++ h+++ ++ al e+   +l+p
  MMETSP0890-20130614|41103_1 17 RFVKHIDDNAINALTEHYRNILRP 40
                 456789999999999999999987 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 6.1e-07
    PF13649.1  25 qrvigvDiseealelakerlsskglkvkfvqada...ralpfeegefdlvvcaglslehlspkqlealleeiarvlkpgG 101
                  +rv ++ +++e+l++ k+ +       +f++ d+    +lpf++++fd v+++ + +++l+ +   +++eei rvlk++G
  MMETSP0890-20130614|41103_1  62 DRVFAIGLNAEELAANKRAN------GNFLVRDLnlePELPFPDNSFDKVFMVVS-VDYLTQPL--QVFEEIYRVLKHDG 132
                  56666666777766544444......599****977667*************766.***99554..57*********998 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.9e-07   0.00084      60     130 ..      82     151 ..      18     179 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.9e-07
    PF13489.1  60 akqaqksqfdeedaaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasdeafakw 130
                   ++ + + + e++  +p+++fd + +  +   + +p +++++i++ lk +G++ +s +n+  + ++a + w
  MMETSP0890-20130614|41103_1  82 GNFLVRDLNLEPELPFPDNSFDKVFMVVSVDYLTQPLQVFEEIYRVLKHDGLACISFSNR-CFPTKAIQRW 151
                  2334444466778889*****************************************997.5566666666 PP

>> PF01555.13  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.1e-06      0.01      30      61 ..     112     143 ..     110     186 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.1e-06
                  S----HHHHHHHHHHHB-----EEE------- CS
   PF01555.13  30 eyleflekvlkevrrvLkddgsifiniddsei 61 
                  +yl+   +v++e++rvLk dg ++i+++ + +
  MMETSP0890-20130614|41103_1 112 DYLTQPLQVFEEIYRVLKHDGLACISFSNRCF 143
                  7999999*******************987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       437  (0.0319631); expected 273.4 (0.02)
Passed bias filter:                      430  (0.0314511); expected 273.4 (0.02)
Passed Vit filter:                        40  (0.00292569); expected 13.7 (0.001)
Passed Fwd filter:                         8  (0.000585138); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.42s 00:00:00.97 Elapsed: 00:00:00.69
# Mc/sec: 715.43
//
Query:       MMETSP0890-20130614|41104_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-18   66.4   0.0    2.3e-18   66.0   0.0    1.1  1  PF07466.6 Protein of unknown function (DUF1517)


Domain annotation for each model (and alignments):
>> PF07466.6  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.7e-22   2.3e-18     101     288 ..      15     204 ..       8     205 .] 0.82

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.7e-22
    PF07466.6 101 ndkvsvvklqvgLlasakelqkdLrrlAekaDTstaeglarvlqeatLaLlRhpelwvyasaeaqkvklesaEs.....qFnrlsleeRskfseetlsnvegqkkqkkatkkassedadatneYivvtllvAaegkl..klpe.vnsaedlreaLralgsiss....ekLlavevlWtPqkegdtLseeellteYPnLkk 288
                  ++ +++  lqv++  +     k L + A++ D  +a gl+  ++     L R  + wvya+++ +  + ++aE       +nrl+ +e +kf++e +   ++ k+++           d ++ Y v +l+vA eg+l   ++   ns +d r aL  l++ +      +L+  e+lWtP + ++tL +e++l ++P+L  
  MMETSP0890-20130614|41104_1  15 RPGATIGLLQVAMTNEKALASKFLGDEAKRLDARSARGLSMFVESICTGLSRRDDSWVYAHTSEKWFNGAEAERndherYYNRLTNKEAAKFEKEYIPSSQELKEASD----------DVAGGYCVASLIVALEGDLrsIFQGaANSVTDFRYALADLAAAATvddgYSLFNAELLWTPSSPQETLLREDMLLDFPELLA 204
                  567889999999977766667779999***********************************998555544444444449*************999876655444333..........66799**************84455579*************99765211247****************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       382  (0.0279403); expected 273.4 (0.02)
Passed bias filter:                      344  (0.0251609); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.39s 00:00:00.87 Elapsed: 00:00:00.77
# Mc/sec: 637.99
//
Query:       MMETSP0890-20130614|41112_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.081   12.8   6.0       0.11   12.3   4.2    1.3  1  PF01346.13 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
        1.3    8.1   7.4        2.1    7.4   5.1    1.3  1  PF07271.6  Cytadhesin P30/P32


Domain annotation for each model (and alignments):
>> PF01346.13  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.2   1.7e-05      0.11       8     109 ..       8     112 ..       1     119 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
   PF01346.13   8 teeaaaaeaklktekdklsYaiGaslgknlkeqleeq....ldkdallkGlqdalagkesklteeeiqkvlqalqkklqakqeekakkkaeenkaegeaFlaenkk 109
                  +ee+++++++l++      Y +  +l ++ k +l+      ++ ++ll+G+ + l  +e+++ +e+   +l++ q++ +a+q++  ++   e+ + +ea +a+ k+
  MMETSP0890-20130614|41112_1   8 DEESQQQKVSLDNVHTLSTYELRQELTRREKMDLFFPenkgINYETLLQGMVHLL-RQEEATVKEKHLLALSEEQAQTRAEQAKIREQRKREAIERSEARMAAKKA 112
                  55555666677777777777777777777777776667789**************.55555555666667888888888888888889999999998887777665 PP

>> PF07271.6  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.1   0.00031       2.1      97     142 ..      69     114 ..      64     123 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00031
    PF07271.6  97 rkekrlleekerqeklaeqlqriseqeeqqaveidpaeevnaqeea 142
                   kek+ll   e+q +   +  +i eq++++a+e   a  + +++  
  MMETSP0890-20130614|41112_1  69 VKEKHLLALSEEQAQTRAEQAKIREQRKREAIERSEARMAAKKAAQ 114
                  59***********999888899***********8776555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1604  (0.11732); expected 273.4 (0.02)
Passed bias filter:                      760  (0.0555881); expected 273.4 (0.02)
Passed Vit filter:                        78  (0.00570509); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.46s 00:00:00.90 Elapsed: 00:00:01.32
# Mc/sec: 225.11
//
Query:       MMETSP0890-20130614|41110_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       893  (0.065316); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        13  (0.000950848); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.97
# Mc/sec: 1875.09
//
Query:       MMETSP0890-20130614|41117_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-64  216.7   0.0    3.1e-64  216.5   0.0    1.1  1  PF00928.16 Adaptor complexes medium subunit family


Domain annotation for each model (and alignments):
>> PF00928.16  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.5   0.0   2.3e-68   3.1e-64       1     262 [.      33     307 ..      33     308 .] 0.87

  Alignments for each domain:
  == domain 1    score: 216.5 bits;  conditional E-value: 2.3e-68
                  -------------EEEEEEEEEEEEEE-----EEEEEEE-EEEEEE------EEEE---SS-B------B-SEEEEETT-B-TTHHHH--EEE------EEEEEEEB-S-..S--SEEEEEEEE.......................-----EEEEEEEEE-.............S-TT--BEEEEEEE------EEEEE--STTEEEE---..-EEEEE--B--........-EE---EEEE----------EEEEEEEET-----------EEE--------EEEEEEEEEEEEEEE- CS
   PF00928.16   1 vpwrpsgikykknevyldviEkvsvlvdkdgkllnsevqGtialkskLsGmpevklsLndelniekkgielddvsfHpcVrlskfeservisFiPpdgefeLmrYrvsee..sklplklecqvk......................eeskgrievnvklesq.............lkrklslenvkitiplPkevskpvlkvsdGkakydseenvleWsikklpg.ekehalsgelelsaeqekeekdrekppvsveFsipgataSglkVrslkvsekkenvkpykwVryvtksgkysvr 262
                  +pwr++g+ky +n +yld+iE+v+ +vdk+g++++sev G i+ +++LsG p++ ls++d+         +dd+sfHpcVr+++fe++rv+sF+Ppdg feLmrYrv++   +  pl l++q++                      +                             ++++++e+v++++p+Pk+v+  +l+ + G++ yd++ ++ +W+i+kl+  + +h+  ++l+ s+  + +++d e p++ v+ ++p a++Sg+++  l++ +  e+++pyk+Vr +tksg++ vr
  MMETSP0890-20130614|41117_1  33 MPWRKAGVKYAQNDIYLDIIEEVDSIVDKSGQVISSEVTGSIQANCRLSGIPDMCLSFTDP-------EVIDDCSFHPCVRYNRFERDRVVSFVPPDGHFELMRYRVNTAtnVAAPLYLTPQISlrdetnphrgrihlqlghkatsS--------------LilpgggstslgarNQSQCQIEDVVVEVPFPKCVKTATLNATVGSCLYDEASKIAKWNIGKLNPnSAKHI--AQLSGSMVIQGNAQDAELPTIIVHWKVPVASVSGIQIAALQLTN--EKYRPYKGVRTLTKSGRFLVR 307
                  69**********************************************************9.......78************************************976666***********999*98776666666666665551..............044444444444335556799**************************************99988223333..56677777777788899************************999..9***************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       289  (0.0211381); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.64
# Mc/sec: 1153.25
//
Query:       MMETSP0890-20130614|41114_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-07   30.3   7.8    2.8e-07   30.3   5.4    3.1  3  PF00412.17 LIM domain
  ------ inclusion threshold ------
        7.8    6.3   9.4         34    4.3   0.0    2.5  2  PF01363.16 FYVE zinc finger


Domain annotation for each model (and alignments):
>> PF00412.17  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   5.4   4.1e-11   2.8e-07       1      55 [.      83     140 ..      83     143 .. 0.89
   2 ?    0.4   0.7     0.093   6.3e+02      20      27 ..     222     229 ..     197     230 .. 0.45
   3 ?   -2.4   0.0      0.66   4.5e+03      10      24 ..     283     297 ..     277     298 .. 0.68

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4.1e-11
                  -TTT-----.TTSCEEEETTEEEECCC-B-TTT-SB-----..EEEETTEEEEHHHHH CS
   PF00412.17   1 CagCnkkia.drelvlkaldkvyHeeCFtCseCqkplkeks..ffekdgklyCkkdyl 55 
                  C +C+++i  ++   + +++ +yH++C  C  C ++l+++s   ++k+g+l+C+ + +
  MMETSP0890-20130614|41114_1  83 CCACGETIFnPQLESYTFRGAKYHKKCVACKACARSLASDSllKYVKNGELLCQVCVV 140
                  999****98645555679***********************9999*********9976 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.093
                  EEEECCC- CS
   PF00412.17  20 kvyHeeCF 27 
                   +yH+eC+
  MMETSP0890-20130614|41114_1 222 PKYHQECL 229
                  36888886 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.66
                  TTSCEEEETTEEEEC CS
   PF00412.17  10 drelvlkaldkvyHe 24 
                  ++ + ++ +d++yH 
  MMETSP0890-20130614|41114_1 283 PDAVSKEKKDEKYHT 297
                  555666789999996 PP

>> PF01363.16  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.2     0.016   1.1e+02      25      67 ..      80     142 ..      69     151 .. 0.83
   2 ?    4.3   0.0    0.0049        34       9      22 ..     194     207 ..     189     217 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.016
   PF01363.16  25 rhhCrlCGk.....................vvCskCsskrvekleeeaaeekevrvCkeCleel 67 
                  r  C +CG+                     v C++C ++++++    +  ++ + +C+ C+ ++
  MMETSP0890-20130614|41114_1  80 RIRCCACGEtifnpqlesytfrgakyhkkcVACKACARSLASDS-LLKYVKNGELLCQVCVVKI 142
                  77899999999999999999999999999999999999999888.5556677778899998665 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0049
   PF01363.16   9 akkCeiCakkFslt 22 
                  +++CeiC+++F++ 
  MMETSP0890-20130614|41114_1 194 VPRCEICGATFNMN 207
                  789********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       684  (0.0500293); expected 273.4 (0.02)
Passed bias filter:                      419  (0.0306466); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:01.03
# Mc/sec: 970.18
//
Query:       MMETSP0890-20130614|41123_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-24   84.4   0.1    1.5e-18   66.8   0.4    3.2  2  PF02622.10 Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> PF02622.10  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.4   1.1e-22   1.5e-18       4     147 ..     117     263 ..     115     274 .. 0.79
   2 !   12.3   0.0   6.4e-06     0.088       5     121 ..     379     511 ..     376     517 .. 0.66

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.1e-22
   PF02622.10   4 ledenFersVvllcehseegalGlilNrpleitlkelleelekealselkeqsvllGGPveqergfvlhsaeke.................ae.esslevseglllttsldilealiasg.egpeklllflGYagWgagQLesEieegsWlvvpadselifdt 147
                  l +++F++ Vv++ +h+e+ + G+i+Nrp++    ++le +e           v lGG v +  +f+  sa+++                 ++ ++ ++v +g++ t+  ++ ++++++g ++pe++ +++GYagW++gQL+ E+++gsW++++ad   ++d+
  MMETSP0890-20130614|41123_1 117 LRQQYFHKCVVVVTQHDEHFTKGVIVNRPSR----RTLEGWE-----------VWLGGDVLEGGLFAAPSAAQKqstqldvecltaeariaKNnSDCIKVVKGIWRTS-FKAAKQMVSDGiAQPEHFWVLAGYAGWAPGQLQGELDRGSWYLAAADGASLVDE 263
                  6789*************************96....5566677...........6777777766666666655444555556666665555422366889999998765.5556666****99**********************************9988875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.4e-06
   PF02622.10   5 edenFersVvllcehseegalGlilNrpleitlkelleelekealselkeqsvllGGPveqer...gfvlhsaeke.................aeesslevseglllttsldilealiasg.egpeklllflGYagWg 121
                  ++++ +rs+ l+++ ++e  ++l lNrp +   k+++ e+ ++   +  e +v +GG +  +    g+v  +  ++                 +++++++ ++ ++l   ++i +  ++sg ++ +++l ++G  +W+
  MMETSP0890-20130614|41123_1 379 DKQYLHRSLLLIVAANPEVVVALTLNRPAS--HKTVVLEIASDR--DRVERTVAFGGDLAARGapgGIVWVTVGDNnednsfggeilpgpysfNSPDNTKSRKIIYLCPPREIARV-LSSGcRDIDQVLAVCGVTAWQ 511
                  67899***********************84..333444444222..27789********776556644444444442334444444444433322446666777777777777777.777767777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       297  (0.0217232); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.38s 00:00:01.31 Elapsed: 00:00:01.09
# Mc/sec: 1356.47
//
Query:       MMETSP0890-20130614|41134_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.7   0.0        0.2   12.2   0.0    1.2  1  PF08238.7 Sel1 repeat


Domain annotation for each model (and alignments):
>> PF08238.7  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05       0.2      20      36 ..      25      41 ..      20      43 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
    PF08238.7 20 vpkdpekAleWyekAAe 36
                 vp+d+++Al+ ye A e
  MMETSP0890-20130614|41134_1 25 VPRDDREALKMYEEALE 41
                 9*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       320  (0.0234055); expected 273.4 (0.02)
Passed bias filter:                      284  (0.0207724); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:00.67
# Mc/sec: 193.14
//
Query:       MMETSP0890-20130614|41136_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-30  103.6   0.0      2e-29  102.3   0.0    1.7  2  PF00004.24 ATPase family associated with various cellular activities (AAA)
    6.5e-06   26.1   0.0     0.0002   21.3   0.0    2.5  1  PF13401.1  AAA domain
    0.00064   19.5   0.0     0.0012   18.6   0.0    1.5  1  PF07724.9  AAA domain (Cdc48 subfamily)
      0.001   18.6   0.0     0.0059   16.2   0.0    2.2  2  PF07728.9  AAA domain (dynein-related subfamily)
     0.0031   18.1   0.1       0.01   16.4   0.0    1.9  2  PF13207.1  AAA domain
     0.0032   16.5   0.0     0.0065   15.5   0.0    1.4  1  PF01078.16 Magnesium chelatase, subunit ChlI
     0.0067   15.9   0.0      0.018   14.5   0.0    1.6  2  PF13479.1  AAA domain
  ------ inclusion threshold ------
      0.014   14.3   0.0      0.027   13.3   0.0    1.4  1  PF05496.7  Holliday junction DNA helicase ruvB N-terminus
      0.021   14.9   0.0      0.058   13.4   0.0    1.7  2  PF00910.17 RNA helicase
      0.035   13.3   0.1         14    4.9   0.0    3.1  3  PF13481.1  AAA domain
      0.048   13.8   0.0       0.15   12.2   0.0    1.9  1  PF13238.1  AAA domain
      0.098   12.1   0.0       0.67    9.4   0.0    2.1  2  PF05729.7  NACHT domain
       0.12   12.1   0.5        1.5    8.6   0.0    2.7  2  PF13671.1  AAA domain
       0.18   10.7   0.0       0.37    9.7   0.0    1.4  1  PF06745.8  KaiC
        0.3   11.3   4.6       0.27   11.4   0.1    2.7  2  PF13191.1  AAA ATPase domain


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   2.2e-32     2e-29       1     131 [.      27     173 ..      27     174 .. 0.91
   2 ?   -3.1   0.0       8.2   7.5e+03     101     123 ..     182     202 ..     178     205 .. 0.77

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 2.2e-32
                  EEEE-------HHHHHHHHHHCTHE...EEEEECCSSSSST-HHHHHHHHHHHHHHHHTS..........-S.EEEEEETGGGC-HHH..SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE-- CS
   PF00004.24   1 vllyGppGtGKTllakavakelgve...fleisgsellskyvgesekkirelfkeakeka..........kp.silfiDEidalaksr..sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                  +llyGppG GKT+l + +a+ l+ve   +  ++g+ell+k+vg +e+k+relf+  +++            p   +++DEidal+++r   +++++++++v +qLl+ +dg ++  +++++ig+tnrp+ ld allr gR+++k++++
  MMETSP0890-20130614|41136_1  27 ILLYGPPGNGKTMLGRYLASVLNVEddcLTIVNGPELLDKFVGVAERKVRELFDVPRREWkqyrlsagvaPPlRLVVFDEIDALCRERgsLDDSTGVRDSVTAQLLSCFDGIEDA-GNILIIGTTNRPELLDAALLRpGRLEVKLFVP 173
                  69********************96666699***********************98644445788999**86689**************9777899*******************7.66**************************9987 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 8.2
                  .TEEEEEE-SSGGGS-HHHHHTT CS
   PF00004.24 101 skvivigatnrpdkldpallrgR 123
                  ++v+ + +t  +++ld   +  R
  MMETSP0890-20130614|41136_1 182 RRVVAVHTTPLMHRLDTDAR--R 202
                  56899999999999998887..3 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.2e-07    0.0002       7     129 ..      27     154 ..      21     156 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.2e-07
    PF13401.1   7 lvvtGesGvGKTtllrrlarqldeeaeaaekarvv.fveapastspkellqkllsalglpakgrltteellealqealrrrrt........rlliiDEaqrL.........s....eealeelrslldd.etgvklvlvGtpelek 129
                  ++++G++G GKT+l r+la+ l+       + + +  v+ p+      ll k+++  +++       +el++  ++  ++ r         rl++ DE++ L         s    +++  +l s++d  e   +++++Gt++  +
  MMETSP0890-20130614|41136_1  27 ILLYGPPGNGKTMLGRYLASVLNV------EDDCLtIVNGPE------LLDKFVGVAERKV------RELFDVPRREWKQYRLsagvapplRLVVFDEIDALcrergslddStgvrDSVTAQLLSCFDGiEDAGNILIIGTTNRPE 154
                  79******************8754......333332333333......3333333333322......2233333333333333333367889*********999887665516676999999999999999999999999987655 PP

>> PF07724.9  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-06    0.0012       5     105 ..      26     137 ..      22     154 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.3e-06
                  -EEEE-------HHHHHHHHHHTT-....--EEEEGGG---..----THHHHHHHHHTTT-HHHHT--.............-EEEETGGG------------..----HHHHHHHH-- CS
    PF07724.9   5 silllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegG.............ivllDEidKihpkessgadvS..regVqrdLLqileg 105
                   ill gp g Gkt+l + la++l+v +++ l++++  ell          v++ ++ + ++v + e                v +DEid  ++++ s  d    r+ V   LL  ++g
  MMETSP0890-20130614|41136_1  26 GILLYGPPGNGKTMLGRYLASVLNV-EDDCLTIVNGPELLDkfV-----GVAERKVRELFDVPRREWKqyrlsagvapplrLVVFDEIDALCRERGSLDDSTgvRDSVTAQLLSCFDG 137
                  5899********************7.9999**********9332.....3555556666666665555566667899****************7444444322378899889888886 PP

>> PF07728.9  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.5e-06    0.0059       2      24 ..      27      51 ..      26      67 .. 0.82
   2 ?   -0.9   0.0       1.2   1.1e+03     113     135 ..     134     160 ..      98     162 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.5e-06
                 EEEE------HHHHHHHGGGGB..S CS
    PF07728.9  2 vlLvGppGtgKselaerlaeal..n 24
                 +lL GppG gK++l ++la++l  +
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVLnvE 51
                 89*******************9553 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.2
                  ..........-EEEEE-SS--.-TT-TTHHH CS
    PF07728.9 113 k........nfrviatanpldrslnelspal 135
                           n+ +i+t+n+++     l++al
  MMETSP0890-20130614|41136_1 134 CfdgiedagNILIIGTTNRPE----LLDAAL 160
                  144444445778888888877....555555 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-05      0.01       2      46 ..      27      78 ..      27     161 .. 0.70
   2 ?   -1.4   0.0       3.9   3.5e+03      67      93 ..     243     270 ..     196     304 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-05
                 E--B--TT---HHHHHHHHHHSTEE.....EEEGGGB-.-GGGS-B--.--- CS
    PF13207.1  2 iaitGppGsGKsTlakeLaerlglp.....vlslddll.reeglkeld.dge 46
                 i+++GppG GK+ l + La  l+++     +++  +ll +  g++e++ ++ 
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVLNVEddcltIVNGPELLdKFVGVAERKvREL 78
                 899******************9966332224555553333344444443333 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3.9
                  ..H..HHHHHHTTS.-----------EE CS
    PF13207.1  67 kkdtlswvidgale.seldlrleeadei 93 
                   +++ s  ++++l+  + dlr +++ ++
  MMETSP0890-20130614|41136_1 243 DQQHASADLESKLQiTYDDLRSSFDAAL 270
                  2344444444444433333444433333 PP

>> PF01078.16  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.1e-06    0.0065      25      47 ..      27      49 ..      19      57 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.1e-06
   PF01078.16 25 lllvGppGsGKtmlakrlpsllp 47
                 +ll+GppG GKtml + l+s+l 
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVLN 49
                 89****************99985 PP

>> PF13479.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05     0.018       6      27 ..      27      48 ..      25      54 .. 0.89
   2 ?   -3.4   0.0       5.7   5.2e+03      24      40 ..     208     224 ..     202     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.9e-05
    PF13479.1  6 vliYGkpGiGKTslaktlpktl 27
                 +l+YG+pG GKT l+++l ++l
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVL 48
                 689**************99887 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 5.7
    PF13479.1  24 pktlfldleagakavkd 40 
                  +++lf d+++ +++++d
  MMETSP0890-20130614|41136_1 208 DSPLFADVDEMNLSAAD 224
                  899****9998776655 PP

>> PF05496.7  Holliday junction DNA helicase ruvB N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05     0.027      52      77 ..      26      51 ..      19      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3e-05
    PF05496.7 52 hvllyGpPGlGkttlakiiakelgve 77
                  +llyGpPG Gkt l + +a+ l+ve
  MMETSP0890-20130614|41136_1 26 GILLYGPPGNGKTMLGRYLASVLNVE 51
                 58******************999986 PP

>> PF00910.17  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.4e-05     0.058       1      59 [.      27      82 ..      27      95 .. 0.66
   2 ?   -2.4   0.0       5.2   4.7e+03      53      90 ..     257     296 ..     247     298 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.4e-05
   PF00910.17  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfg 59
                 i+lyGp+g GK++l ++La+ l     ++   +++ ++   d + g  + +v   +D++
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVLN---VEDDCLTIVNGPELLDKFVGVAERKVRELFDVP 82
                 789**************998887...222223333355555555555555555555555 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 5.2
   PF00910.17  53 vvidDfgqvkdee.nps.dlaelirlvsstpyplnmasle 90 
                  + +dD+ ++ d +  ++  +a l ++   +   ++ a+le
  MMETSP0890-20130614|41136_1 257 ITYDDLRSSFDAAlIDKrKIAALSNTNHRNAAWPQLAQLE 296
                  6788888888887766667777777777777777777666 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.015        14      36      50 ..      27      41 ..      21      62 .. 0.88
   2 ?    3.9   0.0     0.029        27     141     184 ..      97     147 ..      66     151 .. 0.76
   3 ?    0.4   0.1      0.35   3.2e+02      95     135 ..     194     230 ..     176     248 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.015
    PF13481.1 36 tllaGapgtGKStla 50
                 +ll+G+pg GK++l 
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLG 41
                 589**********95 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.029
    PF13481.1 141 egpdlvviDtlsrlvgg..densnsd....v.gaviaalerlakrtgaavl 184
                  + ++lvv+D +++l++   + +++++    v ++++++++ + ++ ++ ++
  MMETSP0890-20130614|41136_1  97 PPLRLVVFDEIDALCRErgSLDDSTGvrdsVtAQLLSCFDGIEDAGNILII 147
                  6799***********888755666654444367778887777777777666 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.35
    PF13481.1  95 aalddpenlllvslagvgslrltaddrrdalltadlerlla 135
                  ++ld++++ +++  +   + +l+ad ++ +l +ad++ +++
  MMETSP0890-20130614|41136_1 194 HRLDTDARRFVTE-P---DSPLFADVDEMNLSAADFAGIIR 230
                  4444444444443.2...22555555555555555544443 PP

>> PF13238.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.15       1      23 [.      27      79 ..      27     183 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
    PF13238.1  1 IlitGtpGvGKtTlakeLaerl..............................g 23
                 Il+ G+pG GKt l+++La+ l                               
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVLnveddcltivngpelldkfvgvaerkvrelF 79
                 89****************98766655555655555555555555555555552 PP

>> PF05729.7  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00073      0.67       3      24 ..      27      48 ..      25      56 .. 0.84
   2 ?   -0.1   0.0      0.59   5.4e+02      84     108 ..     101     125 ..      69     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00073
    PF05729.7  3 vilqGeaGsGKTtLlqklasaw 24
                 ++l G++G GKT+L + las +
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVL 48
                 799***********99888766 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.59
    PF05729.7  84 LlilDglDelvsdlgqlkekqpvrt 108
                  L ++D +D l++  g l++ + vr+
  MMETSP0890-20130614|41136_1 101 LVVFDEIDALCRERGSLDDSTGVRD 125
                  5899999999998888666555544 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0016       1.5       2      39 ..      27      69 ..      27     203 .. 0.75
   2 ?    0.9   0.2      0.37   3.4e+02      40      91 ..     242     295 ..     182     317 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0016
    PF13671.1  2 vllvGlpGsGKstlaerllkklg.....yvrlsqdtlrkrlfg 39
                 +ll G+pG GK+ l + l+  l       ++++ ++l ++  g
  MMETSP0890-20130614|41136_1 27 ILLYGPPGNGKTMLGRYLASVLNveddcLTIVNGPELLDKFVG 69
                 6899**********99998777666666777777775555554 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.37
    PF13671.1  40 tdqq.sktdytrvlkrlyqilnklarkalsagrs.vivdatnlsreerarfvkl 91 
                  +dqq   +d    l+ +y+ l+     al ++r  + + +tn +++ + ++ +l
  MMETSP0890-20130614|41136_1 242 EDQQhASADLESKLQITYDDLRSSFDAALIDKRKiAALSNTNHRNAAWPQLAQL 295
                  333403334444667888888999999998888845678999888877666554 PP

>> PF06745.8  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0004      0.37      15      37 ..      20      42 ..      14      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0004
    PF06745.8 15 GipegrvvlitGepGtGKtifal 37
                 Gi + r +l++G pG GKt+++ 
  MMETSP0890-20130614|41136_1 20 GIRHVRGILLYGPPGNGKTMLGR 42
                 9999****************995 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0003      0.27      25      51 ..      26      47 ..      12     172 .. 0.82
   2 ?    0.4   0.8      0.72   6.6e+02     112     140 ..     228     262 ..     154     303 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0003
    PF13191.1 25 lllvtGpsGiGKSsLlrelakpiller 51
                  +l++Gp+G GK+ L r      l++ 
  MMETSP0890-20130614|41136_1 26 GILLYGPPGNGKTMLGRY-----LASV 47
                 79*************999.....5544 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.72
    PF13191.1 112 iglqalvalldaalartr......rpklvlvlDDl 140
                  i  + ++++ld+a+++++      ++kl +  DDl
  MMETSP0890-20130614|41136_1 228 IIRAGFASALDRAIEDQQhasadlESKLQITYDDL 262
                  22223333333333333323222222233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       298  (0.0217964); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                        15  (0.00109713); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.69u 0.42s 00:00:01.10 Elapsed: 00:00:00.82
# Mc/sec: 1019.91
//
Query:       MMETSP0890-20130614|41138_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0041   16.4   1.2     0.0041   16.4   0.8    3.7  4  PF02809.15 Ubiquitin interaction motif
     0.0083   15.4   0.1     0.0096   15.2   0.1    1.1  1  PF12508.3  Protein of unknown function (DUF3714)


Domain annotation for each model (and alignments):
>> PF02809.15  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   6.1e-07    0.0041       4      18 .]       4      18 ..       3      18 .. 0.94
   2 ?    1.2   0.3     0.046   3.1e+02       8      15 ..      24      31 ..      24      34 .. 0.84
   3 !    9.7   0.5   8.9e-05      0.61       9      18 .]      41      50 ..      40      50 .. 0.90
   4 ?   -1.5   0.3      0.34   2.3e+03      12      18 .]      60      66 ..      60      66 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHHHHHHH CS
   PF02809.15  4 EedLqlALalSleea 18
                 ++dLq+A++ Sl+e+
  MMETSP0890-20130614|41138_1  4 DDDLQKAIEASLAES 18
                 9************96 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.046
                 HHHHHHHH CS
   PF02809.15  8 qlALalSl 15
                 ++A++ S+
  MMETSP0890-20130614|41138_1 24 AQAIEASI 31
                 79****96 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 8.9e-05
                 HHHHHHHHHH CS
   PF02809.15  9 lALalSleea 18
                 +A+++Sl+ea
  MMETSP0890-20130614|41138_1 41 QAIQMSLAEA 50
                 8*******97 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.34
                 HHHHHHH CS
   PF02809.15 12 alSleea 18
                 +lS +e+
  MMETSP0890-20130614|41138_1 60 QLSAQEQ 66
                 7999997 PP

>> PF12508.3  Protein of unknown function (DUF3714)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.4e-06    0.0096      40      77 ..      12      50 ..       2      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.4e-06
    PF12508.3 40 fntlvgsees.ekntIkAvvdetqtvvdGsrvrlRLled 77
                   +l++s+ + e ++I+A + e  +v++ +++++ L e+
  MMETSP0890-20130614|41138_1 12 EASLAESQAAdEAQAIEASIMESDKVQEKQAIQMSLAEA 50
                 56788888889*************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       841  (0.0615126); expected 273.4 (0.02)
Passed bias filter:                      515  (0.0376682); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.41s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 223.22
//
Query:       MMETSP0890-20130614|41130_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   77.2   0.0    1.4e-21   76.8   0.0    1.1  1  PF03435.13 Saccharopine dehydrogenase
  ------ inclusion threshold ------
      0.028   13.6   0.0       0.04   13.0   0.0    1.1  1  PF00773.14 RNB domain


Domain annotation for each model (and alignments):
>> PF03435.13  Saccharopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0     2e-25   1.4e-21      27     203 ..       1     182 [.       1     208 [. 0.89

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 2e-25
   PF03435.13  27 tvadrtlekaqalaaka.....lglrveaialdvsnyeaLeallkegdlvvnlappilslt.vlkaCietgvh.yvd....tsylreavlalkekakeaGvtavleaGfdPGlvslfakkalddlaaelakvlsvk.ihcGelpapepkdnglefkntwspegvleelqppakylkngkivevgwgshe 203
                  t+a+r+ ++ +++ +++      + ++++ ald +++ aL+  l+e  +v+++a+p+++++ vl+aCi+++v  yvd     + + + +la+++kak+aG+ta+l+aG+ PG+++++  +++  l+++l + +++k  + +          gl+  +t + e++   + pp+  + ngki++++++   
  MMETSP0890-20130614|41130_1   1 TLAGRNVKRGENARNEIlreigDNAKINFLALDYKDQNALDTCLQEINAVIHVAGPFYGEPiVLEACIRQKVSvYVDvsdpLE-YLNCALAMHQKAKAAGTTAMLCAGAFPGMSNVLSVETASLLKQQLNATTNIKqLNFSYF------TAGLGGSGTLNLEITNFGFGPPMPHVVNGKIISTPRLAGS 182
                  678899999888888888999999*********************************7775278********86899555544.48889****************************************************99......9999*****************************9987655 PP

>> PF00773.14  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.8e-06      0.04       7      93 ..      27     131 ..      22     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.8e-06
   PF00773.14   7 lpvitIDpetakdlDdAi..................sieklsdgnyelgVhIADvthyvkpdseldkearkrgtsvyLpekvvpMLPeelsedlcsllpgedrla 93 
                  + ++++D ++++ lD  +                   +e    +++ ++V ++D+ +y++   ++ + a+  gt+  L  + +p ++ +ls +++sll+++ + +
  MMETSP0890-20130614|41130_1  27 INFLALDYKDQNALDTCLqeinavihvagpfygepiVLEACIRQKVSVYVDVSDPLEYLNCALAMHQKAKAAGTTAMLCAGAFPGMSNVLSVETASLLKQQLNAT 131
                  56667777777777777777777777777766666666666667799***************************************************9996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       277  (0.0202604); expected 273.4 (0.02)
Passed bias filter:                      263  (0.0192364); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:01.19
# Mc/sec: 720.92
//
Query:       MMETSP0890-20130614|41150_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       544  (0.0397894); expected 273.4 (0.02)
Passed bias filter:                      406  (0.0296957); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.42s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 217.85
//
Query:       MMETSP0890-20130614|41176_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       408  (0.029842); expected 273.4 (0.02)
Passed bias filter:                      317  (0.0231861); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.77
# Mc/sec: 345.45
//
Query:       MMETSP0890-20130614|41173_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-14   52.2   0.2    1.4e-12   47.6   0.0    2.9  3  PF12796.2  Ankyrin repeats (3 copies)
    1.9e-13   50.3   3.7    1.3e-10   41.3   0.1    3.5  4  PF13637.1  Ankyrin repeats (many copies)
    1.3e-12   46.7   6.6    4.3e-06   26.1   0.1    3.7  4  PF00023.25 Ankyrin repeat
    5.1e-12   44.6   1.5    8.2e-05   22.3   0.1    4.2  3  PF13606.1  Ankyrin repeat
    1.6e-11   43.9   0.6    2.9e-08   33.5   0.1    4.2  5  PF13857.1  Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PF12796.2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.087   2.4e+02      29      71 ..      24      71 ..       7      90 .. 0.53
   2 !   47.6   0.0   5.1e-16   1.4e-12       3      85 ..      65     160 ..      63     164 .. 0.87
   3 ?    0.4   0.0      0.27   7.5e+02       4      20 ..     212     230 ..     172     266 .. 0.57

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.087
    PF12796.2 29 pLhlAa.eagnleivklLleaga.dv...nakdkegntpLhlAvrngh 71
                 pL +Aa + g  + ++lL + g  ++     +d  g+ + h+A  +++
  MMETSP0890-20130614|41173_1 24 PLACAAaRDGVSKKLELLFQCGEwEPlgsRGTDRFGYRAHHWASGSKN 71
                 676654144666677777775542223332233578888888854333 PP

  == domain 2    score: 47.6 bits;  conditional E-value: 5.1e-16
    PF12796.2   3 lAaengn...lelvklLlekgadvdl..........getpLhlAaeagnleivklLleagadvnakdkegntpLhlAvrnghlelvklLlekgadv 85 
                  +A  ++n   l ++k+   ++ d+ +          g+t Lh+Aa++g+l+ +k+L++ ga ++a++ +g tpL+l    gh++++++L + ga v
  MMETSP0890-20130614|41173_1  65 WASGSKNgclLTCLKYASRHEIDLLTfqerregnrgGRTLLHWAARNGCLQNAKFLIADGAHLEARTIDGTTPLMLSLYGGHIDVCDYLYDCGALV 160
                  555555555677888888888888889999998889999**************************************************9998865 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.27
    PF12796.2   4 Aaengn..lelvklLlekg 20 
                  Aa++ +  le++ +L +k+
  MMETSP0890-20130614|41173_1 212 AAQHSSsqLEALSFLADKN 230
                  3333322255555555544 PP

>> PF13637.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.4   1.2e+04      35      41 ..      75      81 ..      59      85 .. 0.62
   2 !   41.3   0.1   4.8e-14   1.3e-10       1      53 [.     101     153 ..     101     154 .. 0.98
   3 ?    0.3   0.0      0.36   9.8e+02       6      23 ..     173     191 ..     172     196 .. 0.83
   4 !    7.4   0.0    0.0021       5.8       1      42 [.     204     255 ..     204     266 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.4
    PF13637.1 35 ntaLhiA 41
                  t+L +A
  MMETSP0890-20130614|41173_1 75 LTCLKYA 81
                 3444444 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 4.8e-14
    PF13637.1   1 gltaLhyaaisgrlelvklLlekgidinrtdesGntaLhiAalrgnieilklL 53 
                  g+t+Lh+aa+ g+l+++k+L++ g+ + ++ ++G+t+L + +++g+i+++ +L
  MMETSP0890-20130614|41173_1 101 GRTLLHWAARNGCLQNAKFLIADGAHLEARTIDGTTPLMLSLYGGHIDVCDYL 153
                  69************************************************999 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.36
    PF13637.1   6 hyaai.sgrlelvklLlek 23 
                  h+aa+ + +l ++++L ++
  MMETSP0890-20130614|41173_1 173 HWAAMgHKPLITLQWLAAH 191
                  9999988888889999877 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0021
    PF13637.1   1 gltaLhyaai...sgrlelvklLlekgid.......inrtdesGntaLhiAa 42 
                  g++++h++a+   s+ le++ +L +k+i        + r desG+ +  iA 
  MMETSP0890-20130614|41173_1 204 GHSVFHKLAAqhsSSQLEALSFLADKNIIplnalplLLRPDESGRRPSEIAS 255
                  57999*****999999********9996677777644444999999887775 PP

>> PF00023.25  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2     6e+03       5      14 ..      24      33 ..      24      35 .. 0.79
   2 ?   -3.9   0.0         5   1.4e+04       4      12 ..      76      84 ..      75      84 .. 0.80
   3 !   26.1   0.1   1.6e-09   4.3e-06       2      32 ..     101     131 ..     100     132 .. 0.97
   4 !   22.6   0.1     2e-08   5.5e-05       1      31 [.     133     163 ..     133     165 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.2
                 HHHHHHHTTH CS
   PF00023.25  5 PLHlAalrgn 14
                 PL +Aa r++
  MMETSP0890-20130614|41173_1 24 PLACAAARDG 33
                 8999999875 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 5
                 BHHHHHHHT CS
   PF00023.25  4 TPLHlAalr 12
                 T+L +A+++
  MMETSP0890-20130614|41173_1 76 TCLKYASRH 84
                 899999975 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.6e-09
                  SCBHHHHHHHTTHHHHHHHHHHTTSSTTHBH CS
   PF00023.25   2 GfTPLHlAalrgnlevvklLlsqGAdlnaqd 32 
                  G+T LH+Aa++g+l+ +k+L+  GA l a++
  MMETSP0890-20130614|41173_1 101 GRTLLHWAARNGCLQNAKFLIADGAHLEART 131
                  9****************************98 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 2e-08
                  TSCBHHHHHHHTTHHHHHHHHHHTTSSTTHB CS
   PF00023.25   1 dGfTPLHlAalrgnlevvklLlsqGAdlnaq 31 
                  dG TPL+l  + g+++v+ +L ++GA + +q
  MMETSP0890-20130614|41173_1 133 DGTTPLMLSLYGGHIDVCDYLYDCGALVGVQ 163
                  8*************************88665 PP

>> PF13606.1  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1     3e-08   8.2e-05       2      28 ..     101     127 ..     100     129 .. 0.93
   2 !   14.3   0.0   1.2e-05     0.033       1      27 [.     133     159 ..     133     162 .. 0.92
   3 ?    4.3   0.1      0.02        55       1      29 [.     203     235 ..     203     236 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3e-08
    PF13606.1   2 GnTpLhlAasngrielveaLlengadi 28 
                  G+T+Lh+Aa+ng+++ +++L+  ga++
  MMETSP0890-20130614|41173_1 101 GRTLLHWAARNGCLQNAKFLIADGAHL 127
                  9*********************99987 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.2e-05
    PF13606.1   1 nGnTpLhlAasngrielveaLlengad 27 
                  +G TpL+l ++ g+i+++++L ++ga 
  MMETSP0890-20130614|41173_1 133 DGTTPLMLSLYGGHIDVCDYLYDCGAL 159
                  699******************999986 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.02
    PF13606.1   1 nGnTpLh.lAasng..rielveaLleng.adin 29 
                  +G +++h lAa++   ++e++++L ++  + +n
  MMETSP0890-20130614|41173_1 203 HGHSVFHkLAAQHSssQLEALSFLADKNiIPLN 235
                  58899**6688865236999***9986415565 PP

>> PF13857.1  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.5   6.9e+03      16      24 ..      59      67 ..      54      81 .. 0.53
   2 !   33.5   0.1   1.1e-11   2.9e-08      13      54 ..      98     139 ..      84     140 .. 0.91
   3 !   16.0   0.0   3.3e-06    0.0091      14      43 ..     132     157 ..     128     165 .. 0.86
   4 ?    1.2   0.1      0.16   4.3e+02      21      39 ..     173     193 ..     172     209 .. 0.82
   5 ?   -2.1   0.0       1.7   4.6e+03      10      27 ..     241     258 ..     234     262 .. 0.59

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.5
    PF13857.1 16 gntpLhlAa 24
                 g+ + h+A 
  MMETSP0890-20130614|41173_1 59 GYRAHHWAS 67
                 555555553 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 1.1e-11
    PF13857.1  13 deggntpLhlAakggalevvrlLlapgadlnlrdsdgltald 54 
                  ++gg+t+Lh+Aa++g+l+ +++L+a ga+l +r+ dg t+l 
  MMETSP0890-20130614|41173_1  98 NRGGRTLLHWAARNGCLQNAKFLIADGAHLEARTIDGTTPLM 139
                  57788***********************************95 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 3.3e-06
    PF13857.1  14 eggntpLhlAakggalevvrlLlapgadln 43 
                    g+tpL+l  +gg+ +v+++L+    d++
  MMETSP0890-20130614|41173_1 132 IDGTTPLMLSLYGGHIDVCDYLY----DCG 157
                  5689*******************....665 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.16
    PF13857.1  21 hlAak.ggalevvrlLl.apg 39 
                  h+Aa+ +  l  +++L  +++
  MMETSP0890-20130614|41173_1 173 HWAAMgHKPLITLQWLAaHAP 193
                  9****9999999999997443 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 1.7
    PF13857.1  10 natdeggntpLhlAakgg 27 
                   + de+g+ p  +A  +g
  MMETSP0890-20130614|41173_1 241 LRPDESGRRPSEIASCAG 258
                  455666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       193  (0.0141164); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 837.21
//
Query:       MMETSP0890-20130614|41181_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      255  (0.0186513); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.40s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 363.59
//
Query:       MMETSP0890-20130614|41191_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       139  (0.0101668); expected 273.4 (0.02)
Passed bias filter:                      134  (0.00980105); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.38s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 239.64
//
Query:       MMETSP0890-20130614|41179_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-126  422.6   7.1   2.9e-118  395.4   4.3    2.0  2  PF00118.19 TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> PF00118.19  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.4   4.3  2.1e-122  2.9e-118       1     434 [.      38     482 ..      38     500 .. 0.95
   2 !   26.2   0.0   1.9e-10   2.6e-06     428     485 ..     532     588 ..     525     591 .. 0.84

  Alignments for each domain:
  == domain 1    score: 395.4 bits;  conditional E-value: 2.1e-122
   PF00118.19   1 ladivkttLGPkGrnkmlvnkggkivitndgatilkelelqhpvakllveaaksqdeevGDGtttaviLageLleeaeklikagihpteiirglelaleialkaLekisislsvdk..reellkvartslnsklssresellsklvvdAvkiieeea.....eldvgnigvikieggsledseli.eGvvldkgylspdmpkrlenpkillldcsleteketktkvvlkd.aeelekleeaeekqllpllekivesgvnlviiakgiddealhfLakngilalrrvkkedlerlakltgatavsrleslee.ed.....lGkakkveeeeigedkttliegestlsgkvatillrgateveldeleraiedalravkaalkdegvvpGGGaaelelskkLreeakslsgkeqlgieifakAleaipktLaeNagldpkevlaklkaahk 434
                  +++i+k++LGP+G +kmlv+  g+++itndgatil++le++hp+ak+lve+a+ qd+evGDGtt++vi+a+eLl+++++l+k+gihpt++ +g++lal++a+k++++  + ++     ++ ++k a+tsl sk+ + e e+ skl+v+Avk++++++     ++ v  i ++k +g+s+++seli +G++l+ + + + mp+ ++n+ki++ld++l+  k   t+v ++  ++e+e +++ e ++ ++ + k++e+g+n++++ kgidd +l++++++g +a rrvkkedl rla++t++++vs+l +le  e      lG+a+ v ee++g+ ++++i+  ++  +++at++lrga+e+ ldel ra++d   +vk++l++  vv+GGGa+e +ls +L ++a sl ++eql++  fa+Al++ip+tLa Na  d+++++a l+a+h+
  MMETSP0890-20130614|41179_1  38 ISNILKSSLGPTGLDKMLVDEIGELTITNDGATILQKLEVEHPAAKVLVELAELQDSEVGDGTTSVVIIAAELLKRGNELVKNGIHPTTVMSGYRLALKEAVKYIKSTLMIQT-HVlgESAVAKAAATSLASKVLNAEPEFWSKLAVKAVKAVKTQTidgksRYPVSAIHILKAHGKSSMESELIaDGFALNVTRAAQGMPNFIRNAKIAMLDFPLQRHKV-STGVSVEVaVNEVEGVRRREMDITKERIAKMIEAGANVILTTKGIDDACLKYFVEAGAIAARRVKKEDLTRLARATNGSLVSTLADLEGnETfdpnqLGTADLVAEERVGDGEMLYIR--GCSGARAATVVLRGANEYHLDELDRALHDVFMIVKRVLESAAVVAGGGAVEAALSVYLDNFAHSLGSREQLAVAEFAQALLVIPRTLAVNAASDAIDLVATLRAHHA 482
                  79*******************************************************************************************************77733333.33489**********************************99999**99999999***************************************************99.6777776515899***********************************************************************7776423356677*********************..9*******************************************************************************************************885 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.9e-10
   PF00118.19 428 klkaahkkgenlgidaetgeiidlveagilDplkvkrsalksavevasliLtidqiik 485
                  +l++  k+ ++ g+d+ + +  ++++agil+p+ +k ++l+ a+e+a++iL+id+ i+
  MMETSP0890-20130614|41179_1 532 DLEE-EKGLKYTGLDLTQCTTRNNLNAGILEPAISKIKCLRFATEAAITILRIDDSIR 588
                  4444.3444599***9999999*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       402  (0.0294032); expected 273.4 (0.02)
Passed bias filter:                      260  (0.019017); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.42s 00:00:01.31 Elapsed: 00:00:01.06
# Mc/sec: 1363.21
//
Query:       MMETSP0890-20130614|41184_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-19   68.4   0.1    9.8e-19   67.5   0.0    1.3  1  PF13324.1 Grap2 and cyclin-D-interacting


Domain annotation for each model (and alignments):
>> PF13324.1  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   7.2e-23   9.8e-19      10     270 ..      18     256 ..      12     259 .. 0.72

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 7.2e-23
    PF13324.1  10 qvskqATvvgllwskgelPkaeelkelmeayfnalqglllvch.gstvgaGpTLsklireavkqvvdssfqLleeavssygsrekdrkqaipqltgsVweACsalkkvPktNlaAigraltqvavlvKDvlrEmkelkegkaldesedsesdssssdddlegldlndDeylseeemeviklvlgvvseslavlkelirvitellkkekkkdneekvaqLekll...dlcqeisvqvdeLgasvYPPqelaevkqtvkklssvlkk 270
                   +s  AT++gl+ + +   +      l+       ++l+++c+  s+ gaG  L++l+  a+ qv+ ++  L+e ++s      ++r    p  +g VweAC+   k P++N+aA  r +      +KD ++E +++  ++ +d++e s+ + ++++  ++ + ++++ +++e e++ +++ l+v++++   l+ +++             ++     ++ ++     +++i +    ++  +YPP+e++++  +++ l s l++
  MMETSP0890-20130614|41184_1  18 SISSTATKLGLVLADP---S------LCREATDQCEQLATACYvISKSGAGAPLNELVSTATLQVLTAMRGLVECLIS------NSRTVDAPPKAGIVWEACDVALKCPRSNRAAFHRKILAWCCELKDSIEEFRRVLLEEDVDDEESSTAQGQEDQFTDDLFFFGKE-NYTEIERQNMQKLLAVLHAVGRTLQCTLIELD----------DAGTNGDFDRIVlcfTQAERIHQVAALISEELYPPLEMKTLALRMHTLLSDLDR 256
                  5777888888888322...2......23333333445556666157889*****************************......66777788999******************************************9988888888877765444444444555666.78888888888888887777777764433333..........33333445555400033333333333344468**********999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       362  (0.0264775); expected 273.4 (0.02)
Passed bias filter:                      300  (0.0219427); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.35s 00:00:00.92 Elapsed: 00:00:00.66
# Mc/sec: 1038.42
//
Query:       MMETSP0890-20130614|41205_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       424  (0.0310123); expected 273.4 (0.02)
Passed bias filter:                      374  (0.0273552); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.35s 00:00:00.93 Elapsed: 00:00:00.68
# Mc/sec: 898.63
//
Query:       MMETSP0890-20130614|41192_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-39  135.8   0.0      2e-39  135.3   0.0    1.2  1  PF01915.17 Glycosyl hydrolase family 3 C-terminal domain
    3.8e-07   29.8   0.0    7.8e-07   28.8   0.0    1.5  1  PF14310.1  Fibronectin type III-like domain
  ------ inclusion threshold ------
        0.1   11.2   0.0       0.15   10.7   0.0    1.2  1  PF07149.6  Pes-10


Domain annotation for each model (and alignments):
>> PF01915.17  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.0   4.3e-43     2e-39       1     227 []      69     301 ..      69     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 135.3 bits;  conditional E-value: 4.3e-43
                  -EEEEEGGG--S------EEEEEESSHH...............................HHHHHHHHHHHHHHTTSS---EEEEEET----HHHHHHHHH-SEEEE---......-S--B---B-SS--SGGGHHHHHHHHHHHHHT--EEEEE-SSGGGGGGGT.T-SEEEE------STTT---TTT----------SS-EE-SS.........................----EEE-------S-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF01915.17   1 iVLLkNegnlLPLkkkkkkiaviGpnad...............gtvksgggsgavnpsylvtplegirarlskakvvveekgseveddeeiaeavaaakkaDvavvvvgewegegekeeeseegdrtdlalpenqdeLieavaaankpvvvvlhsggpvdmepwaekvkAilaawypGqegGnAiadvLfGdvnPsGkLPvtfpksledlpayynek.......ekkrtyrydsedplypfgeGlsvgy 227
                  ++LLkN+ ++LPL++ + +i ++G   +               g  +  ggsg+v p ++v++++gi  r+sk++++v+++      ++++++a   a++ Dv++++ g+  +eg         dr +l+l++ +d L++   ++ +p+ +v  + g +   p+a++++A+la +++G ++G+Aia++LfGd nP+ kLPvtfpk+++d+    +e+        +       + + ++pfg+Gls+++
  MMETSP0890-20130614|41192_1  69 VILLKNQHSILPLQQGQ-SIGIVGSACNasnnifemfyggwnsGNYYVIGGSGRVIPASVVSVYDGIIGRASKENFTVHASL-----SDDLDSALLLAAQVDVVIACGGARTTEGA--------DRLSLSLDQ-EDFLVNLTTKTSTPITIVALAPGTILT-PFANDADALLAIFFGGAQTGTAIANILFGDSNPAAKLPVTFPKNVTDTVQPCHESicnytedLYVGYRALRNSQVAFPFGHGLSYTQ 301
                  68***************.*******99999********999997788899999***********************887666.....79********************9999998........777777753.445555556666777777777777777.*********************************************88887766668888776333334457789***********85 PP

>> PF14310.1  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.7e-10   7.8e-07       1      57 [.     334     391 ..     334     392 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.7e-10
    PF14310.1   1 evvQlYvsdpegsverpvkqLkgFekve.Lap.Gesetvtitldrkdlsvwdeeaqnwv 57 
                  +v QlYv +p++ +++p+  Lk+F+k+  L+p G++  v + ld ++l ++d+ +++w+
  MMETSP0890-20130614|41192_1 334 DVPQLYVIYPDA-AQEPPMLLKNFAKTRvLEPkGDQVVVDLHLDLTELEIFDSIKSKWT 391
                  699********9.9*****************97888899**************999996 PP

>> PF07149.6  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.2e-05      0.15      74     120 ..     345     391 ..     339     394 .] 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.2e-05
    PF07149.6  74 lqqEkpkllkefaeitkeervpeelvlkLltslmnlddlelvksafe 120
                   +qE p llk+fa++   e  ++++v+ L  +l +l+ ++ +ks + 
  MMETSP0890-20130614|41192_1 345 AAQEPPMLLKNFAKTRVLEPKGDQVVVDLHLDLTELEIFDSIKSKWT 391
                  589************99999*********************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      289  (0.0211381); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.40s 00:00:01.10 Elapsed: 00:00:00.86
# Mc/sec: 1097.87
//
Query:       MMETSP0890-20130614|41188_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-25   88.5   0.0    5.6e-25   87.6   0.0    1.5  1  PF13359.1 DDE superfamily endonuclease
    3.4e-07   29.7   0.2    6.4e-07   28.8   0.1    1.4  1  PF04827.9 Plant transposon protein


Domain annotation for each model (and alignments):
>> PF13359.1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   8.2e-29   5.6e-25       1     153 []     206     362 ..     206     362 .. 0.90

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 8.2e-29
    PF13359.1   1 iDgteipierpssle..eqaqtysgykkhntlkvlvvvdpdgkiifvskgwpGsvsDkrvleesgllkklk..q..pgdvvlaDrgfplsdkllvpykkkkqlseeeeefnrrlasarihvervigrlKgrfkilkgrlrikklekldkivlvccvLhN 153
                  +Dg+ i i++p + e   +   ++++k  + l+v++++d++ k++f+s   pGs+ D+ ++++s l  k +  +  + +++ +D++++    +++p  ++  l+  +  fn+ +++ ri +++++g+l  r+ i+ ++l+ + ++ +++i+++c++LhN
  MMETSP0890-20130614|41188_1 206 VDGIAICIRKPLKREcgGKPWHFYNRKGFYALNVQAMCDKKKKFLFYSIKCPGSTDDSTAWDMSSLGMKTEsrEmlEPYWIAGDAAYRAGLFMVTPW-PGRGLDTWKDSFNYCHSNCRISIDCAFGILHARWGIFWKPLNCS-IHIATQIISACMILHN 362
                  7999*******9999533333444455555************************************999777625677**********999889999.799*****************************************.***************9 PP

>> PF04827.9  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   9.3e-11   6.4e-07     148     202 ..     316     369 ..     308     372 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 9.3e-11
    PF04827.9 148 qkqeaarkdverafGvlqarfkivakparlwekedlakimkaciilhnmiveder 202
                       +r  +++afG+l+ar+ i  kp +  + +  ++i+ ac+ilhn+ ve++ 
  MMETSP0890-20130614|41188_1 316 YCHSNCRISIDCAFGILHARWGIFWKPLN-CSIHIATQIISACMILHNICVEENV 369
                  556789******************88865.5788899***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       371  (0.0271358); expected 273.4 (0.02)
Passed bias filter:                      324  (0.0236981); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.41s 00:00:01.13 Elapsed: 00:00:00.65
# Mc/sec: 1596.34
//
Query:       MMETSP0890-20130614|41208_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   30.9   0.0    1.4e-07   30.6   0.0    1.1  1  PF04960.10 Glutaminase
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.012   14.9   0.0    1.1  1  PF12772.2  Growth hormone receptor binding
      0.091   13.2   0.0       0.28   11.6   0.0    1.7  2  PF14204.1  Ribosomal L18 C-terminal region


Domain annotation for each model (and alignments):
>> PF04960.10  Glutaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.1e-11   1.4e-07       1      37 [.      36      72 ..      36      77 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 3.1e-11
                 ----SSSCCHHT--TT--EEEEE-----EEEE--TT- CS
   PF04960.10  1 GkvadyiPaLakvdkdklgiavvtvdgevlsaGdake 37
                 G+vadyiP+La++d+++++ia++ ++g+ +s+Gd + 
  MMETSP0890-20130614|41208_1 36 GHVADYIPELANTDPEHFAIALCDTEGRLYSVGDQSA 72
                 89********************************865 PP

>> PF12772.2  Growth hormone receptor binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.7e-06     0.012      59      90 ..      23      58 ..       4      77 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.7e-06
    PF12772.2 59 ssknllgvkddDSGrascydPdildtdts....klv 90
                   +++ ++kd DSG+   y P++ +td +     l 
  MMETSP0890-20130614|41208_1 23 LIETYESIKDKDSGHVADYIPELANTDPEhfaiALC 58
                 5568899********************984444333 PP

>> PF14204.1  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.55   2.5e+03      43      58 ..      17      32 ..       7      36 .. 0.74
   2 ?   11.6   0.0     6e-05      0.28      11      29 ..      36      54 ..      34      57 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.55
    PF14204.1 43 ddleelykkahaaIra 58
                 +++e++  + +++I+ 
  MMETSP0890-20130614|41208_1 17 NNVEQILIETYESIKD 32
                 6778888888777764 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6e-05
    PF14204.1 11 khvaeYmkeLkeedeekYk 29
                 +hva+Y+ eL++ d+e++ 
  MMETSP0890-20130614|41208_1 36 GHVADYIPELANTDPEHFA 54
                 8***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       409  (0.0299152); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.39s 00:00:00.73 Elapsed: 00:00:00.88
# Mc/sec: 212.40
//
Query:       MMETSP0890-20130614|41217_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-10   40.2   0.2    4.1e-10   39.8   0.1    1.1  1  PF03372.18 Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.031   14.4   0.0       0.06   13.5   0.0    1.4  1  PF13966.1  zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> PF03372.18  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   6.1e-14   4.1e-10       8     251 .]       6     264 ..       2     264 .. 0.64

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 6.1e-14
                  .......CGTHCHHHHHHHTCG-SEEEEECC-TCHHHHHHCHHCTTT-EEEE--------SEEE.ECTEEEEEEESCGCCEEEEEECTTS.....S-ECGGCEECCTCEEEEEEEEEE....CTEEEEEEECHHHC.TSSTTSHHHHHHHHHHHHHHCCHHHHSEEEE---S--BSSGHTTTBHHHHHSHHCBHBCCHHHHCBTT-C--SB--TC-TTTCC.CHHB.....................--S--EE.............BHHHCCCCEEEEECTHHCHS...........SSS CS
   PF03372.18   8 wnarsdrakkldqladllqsedpDvllLQEvdedplsellatglasglglagdgkvggggggda.lgggglallskypldksirrtfqld.....gkagiavprlssknkgdvpvrfr....ggktlalvntHltp.gnrlrqrderallaeidkladdsrgspvilaGDfNsrpdspdkgfrenaadflpgdgfddglrallphlllptspgttdtyeka.gepa.....................rlDyilv.............ssgwpalvvsgalllpdrgg...........SDH 251
                  w++r +r      +a+ +   ++ ++  QE      ++l  ++l++ lg  ++  vg g++gd       +a+l+     + i +t+         +a+ia+  + s+   + +  fr    +++ + ++ntHl + +++ r + +  l++ + +l +       +++GDfN++ d+ +         f++  + +  l+a++  + ++t++ +  t+ ++ g+                       ++D i+v             +    a  v+                     SDH
  MMETSP0890-20130614|41217_1   6 WRDRKSR------VAKSIEISKAEIVGTQEG---LAWQL--DELVTILG-SNWKRVGVGRYGDLsDEDEHTAILYDSTNIELIDSTDFWLsnqpqKQASIAW--GASLPRIATVAHFRhrnvPEEKIIVINTHLDHaSQSARTHSAKLLRKTAIALQA------AVVMGDFNAPKDEEW---------FTEMTKDSTLLDAWPLATIKKTGSAGQSTFHNWyGG-RgataqwlmpytsselvlsgerHIDAIFVasnffnkkhvsiaR----AGLVTD--------DrrrsvyggpfaSDH 264
                  8888888......999999999*********...45555..67888888.8888888888999999999*******86666655555333566654444443..445555555555557777799********7775777777777777777776666......9*******9998744.........333333333344443334433333333333333221.12455666677777777777779******97777666533321....222222........233334444677999 PP

>> PF13966.1  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.8e-06      0.06      22      64 ..      78     121 ..      62     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.8e-06
    PF13966.1  22 ki.vwkskvppKvkffaWlalknrlltkdrlqkrgwqlpnrCvl 64 
                  ++ +w s+ p+K + +aW a   r++t   +++r++  ++++v+
  MMETSP0890-20130614|41217_1  78 STdFWLSNQPQKQASIAWGASLPRIATVAHFRHRNVPEEKIIVI 121
                  3345*******************************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       341  (0.0249415); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.42s 00:00:01.00 Elapsed: 00:00:00.78
# Mc/sec: 967.76
//
Query:       MMETSP0890-20130614|41220_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       829  (0.0606349); expected 273.4 (0.02)
Passed bias filter:                      441  (0.0322557); expected 273.4 (0.02)
Passed Vit filter:                        39  (0.00285255); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.40s 00:00:00.91 Elapsed: 00:00:00.51
# Mc/sec: 888.06
//
Query:       MMETSP0890-20130614|41228_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   33.8   0.0      2e-08   33.7   0.0    1.0  1  PF00459.20 Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> PF00459.20  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.5e-12     2e-08      15      69 ..       3      61 ..       1      62 [] 0.93

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.5e-12
                 HHHHHHHHHCC-HCCHSEEE....H..-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHC CS
   PF00459.20 15 kagevlreafsnslvveeke....ksgeedlvtaadkaveelilealaakfpgdkilge 69
                 + g+v+++++++++ +e k+     +++  +vt ad+++e++i++ +aak+p+++++ge
  MMETSP0890-20130614|41228_1  3 ASGQVILKYWRKPFEIEDKThadnRAESSSPVTIADREAEATIRRLIAAKYPNHGVIGE 61
                 579*****************9988777778****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.61
# Mc/sec: 243.56
//
Query:       MMETSP0890-20130614|41221_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00031   20.7   0.4    0.00053   19.9   0.3    1.3  1  PF04145.10 Ctr copper transporter family
  ------ inclusion threshold ------
      0.081   11.9   0.1       0.12   11.4   0.1    1.1  1  PF00001.16 7 transmembrane receptor (rhodopsin family)


Domain annotation for each model (and alignments):
>> PF04145.10  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   7.7e-08   0.00053      11      96 ..     189     275 ..     184     291 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.7e-08
   PF04145.10  11 dtcllfssWrittkgeyagsciaifllavlye..gLkavrrklerklakrasrnskavksasrsaeaekskaeksakstrattvplra 96 
                  +  ++fs+   ttk  ++ ++ ++f+la+l+   +++++r +l++k + ++ r+s a+ + s+s+++e+++++ +++ +r+ttv +++
  MMETSP0890-20130614|41221_1 189 QHSIIFSQQPGTTKRPFFHIVTFLFILAALAVtfAIRRCRTRLSNKFKTHR-RRSGAYDRLSTSPSSEETRNRRKQQRRRRTTVASSI 275
                  5679**************999999999988763368899999999988655.666666666666666666655555544444444443 PP

>> PF00001.16  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.7e-05      0.12     117     207 ..     172     273 ..     168     282 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
                  XXXXXXXXXXXXX......XXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXXX--TTTTT---H CS
   PF00001.16 117 lpplllswsnteeeeeataclisfpsek......ersytllstlvafvlpllvilvlylriyralrkrakklaskrs.................skrkkslkkekkaaktllii 207
                  +p  ++ ++n+e+++++++ +i f +++         ++++++++a +  ++ i  + +r   + + +        +                 +   ++++k+++  +t+++ 
  MMETSP0890-20130614|41221_1 172 VPT-IFLQMNKEQQPKKEQHSIIFSQQPgttkrpFFHIVTFLFILAALAVTFAIRRCRTRLSNKFKTH--------RrrsgaydrlstspsseeT---RNRRKQQRRRRTTVAS 273
                  455.5556677777777888888888874333222222222222222223333333333333333333........23456777799***96642...4444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       894  (0.0653891); expected 273.4 (0.02)
Passed bias filter:                      559  (0.0408865); expected 273.4 (0.02)
Passed Vit filter:                        64  (0.0046811); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.42s 00:00:01.11 Elapsed: 00:00:01.19
# Mc/sec: 656.48
//
Query:       MMETSP0890-20130614|41229_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      193  (0.0141164); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.43s 00:00:00.83 Elapsed: 00:00:00.73
# Mc/sec: 449.73
//
Query:       MMETSP0890-20130614|41233_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-15   55.5   0.0    9.1e-15   54.9   0.0    1.3  1  PF00004.24 ATPase family associated with various cellular activities (AAA)
    0.00096   18.4   0.2     0.0039   16.5   0.0    2.1  2  PF13481.1  AAA domain
     0.0018   17.8   0.1      0.011   15.3   0.0    2.2  2  PF13245.1  Part of AAA domain
     0.0028   18.2   0.1     0.0076   16.9   0.1    1.9  1  PF13207.1  AAA domain
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.045   13.5   0.0    1.6  1  PF13671.1  AAA domain
      0.029   14.6   5.2      0.051   13.8   2.9    1.9  2  PF13191.1  AAA ATPase domain
      0.079   12.9   0.1       0.22   11.4   0.0    1.9  1  PF13401.1  AAA domain
      0.084   12.3   0.0       0.16   11.4   0.0    1.3  1  PF13086.1  AAA domain
       0.12   12.2   1.0          2    8.2   0.0    2.8  3  PF13521.1  AAA domain
        1.5    8.3   6.9        2.6    7.5   4.8    1.3  1  PF12522.3  Cytomegalovirus glycoprotein N terminal


Domain annotation for each model (and alignments):
>> PF00004.24  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   6.6e-18   9.1e-15       2     129 ..      31     155 ..      30     158 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 6.6e-18
                  EEE-------HHHHHHHHHHCTHEEEEEECCSSSSST-HHHHHHHHHHHHHHHHTS-SEEEEEETGGGC-HHH.....SS..TTHCHHHHHHHHHHHHHTTTTS.TEEEEEE-SSGGGS-HHHHH.TTSCCEEE CS
   PF00004.24   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkie 129
                  ll+GppG GKT+++ a+a +++ +++ +s+s+        s ++++  + ++ + a    +++++ida +++r      ++++  ++ +++ Ll++ldg    e+  ++ ++tn  ++ld+allr gR+d++ +
  MMETSP0890-20130614|41233_1  31 LLHGPPGGGKTSFVLALAGHFKLDVCLLSLSDDA-----LSDDRLALALANVPTDA---LVLLEDIDAAFPDRqryntPQNSTLRSSLTLSGLLNALDGAAAAEG-RLLFMTTNFLERLDEALLRpGRVDVVHK 155
                  9************************999999988.....78999999999987776...**************9998666777888889*************877.899999******************9876 PP

>> PF13481.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.8e-06    0.0039      20      57 ..      14      51 ..       2      95 .. 0.89
   2 ?   -0.7   0.1      0.51     7e+02     152     163 ..     169     180 ..     111     213 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.8e-06
    PF13481.1 20 ppldwlvkgllprgsltllaGapgtGKStlalqlaaav 57
                 + +dw  ++ +p    +ll G+pg GK++++l+la++ 
  MMETSP0890-20130614|41233_1 14 QSEDWYRQRGVPYRRGYLLHGPPGGGKTSFVLALAGHF 51
                 56789999888888889******************996 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.51
    PF13481.1 152 srlvggdensns 163
                  +++++ den+++
  MMETSP0890-20130614|41233_1 169 RSFFDLDENDQR 180
                  344444555544 PP

>> PF13245.1  Part of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.8e-06     0.011      13      55 ..      30      65 ..      23      93 .. 0.78
   2 ?   -0.8   0.0      0.83   1.1e+03      51      65 ..     133     148 ..     111     161 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7.8e-06
    PF13245.1 13 lvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraa 55
                  ++ G+PG GKT  ++a++ ++  +       v+l++ ++ a+
  MMETSP0890-20130614|41233_1 30 YLLHGPPGGGKTSFVLALAGHFKLD-------VCLLSLSDDAL 65
                 578*****************98733.......66666666665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.83
    PF13245.1  51 tgraakrlserl.llg 65 
                  t+ +++rl e+l  +g
  MMETSP0890-20130614|41233_1 133 TTNFLERLDEALlRPG 148
                  7788888888886222 PP

>> PF13207.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   5.5e-06    0.0076       3      40 ..      31      71 ..      30     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.5e-06
                 --B--TT---HHHHHHHHHHSTEEE..EEGGG.B-....-GGGS- CS
    PF13207.1  3 aitGppGsGKsTlakeLaerlglpv..lsldd.ll....reeglk 40
                 +++GppG GK+++  +La ++ l+v  lsl+d  l    +    +
  MMETSP0890-20130614|41233_1 31 LLHGPPGGGKTSFVLALAGHFKLDVclLSLSDdALsddrL----A 71
                 789*****************97776447777753323332....3 PP

>> PF13671.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05     0.045       3      79 ..      31     135 ..      30     199 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.3e-05
    PF13671.1   3 llvGlpGsGKstlaerllkklg..yvrlsqdt.............................lrkrlfgtdqqsktdytrvlkrlyqilnklarkalsagrsvivdatn 79 
                  ll+G+pG GK+ ++ +l+ + +   ++ls  +                             + +r +++   +++++t +++ ++  l++ +  a++a +  ++  tn
  MMETSP0890-20130614|41233_1  31 LLHGPPGGGKTSFVLALAGHFKldVCLLSLSDdalsddrlalalanvptdalvlledidaaFPDRQRYN---TPQNSTLRSSLTLSGLLNALDGAAAAEGRLLFMTTN 135
                  79***********99998766666666554444566666555555555555555444333311111111...111233344445555555555555555555555555 PP

>> PF13191.1  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.9   3.8e-05     0.051      24     143 ..      25     164 ..      14     203 .. 0.66
   2 ?    0.3   0.5      0.51   6.9e+02      52      93 ..     164     199 ..     140     239 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.8e-05
    PF13191.1  24 p...lllvtGpsGiGKSsLlrelakpillerlrfaagkfdqllrn.........lpysaiiqalrellrqlltelaaelggwreallaalga.............lipelegiiglqalvalldaalartrrpklvlvlDD..lqwa 143
                  p     l++Gp+G GK+s + +        ++ f+  ++ + l +         l+++ +  ++  ll+ +  +  ++ ++ +++ + + ++              ++e+ ++  ++++++ ld+al r  r  +v  lDD  l  a
  MMETSP0890-20130614|41233_1  25 PyrrGYLLHGPPGGGKTSFVLA-------LAGHFKLDVCLLSLSDdalsddrlaLALANVPTDALVLLEDIDAAFPDRQRYNTPQNSTLRSSltlsgllnaldgaAAAEGRLLFMTTNFLERLDEALLRPGRVDVVHKLDDatLEQA 164
                  3445799*************55.......6778888888888888555555555444444444999999999999999999999999998885555666655544444444444445555555555555554336666666553333 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.51
    PF13191.1  52 lrfaagkfdqllrnlpysaiiqalrellrqlltelaaelggw 93 
                  + f+   f++l +n      +q+ r+++++ l+++ ++l+++
  MMETSP0890-20130614|41233_1 164 ADFLFRSFFDLDEN------DQRPRDFANAALRASLEQLERR 199
                  44444444444444......2334444444444444444333 PP

>> PF13401.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.22       4      68 ..      27      98 ..      21     180 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00016
    PF13401.1  4 agilvvtGesGvGKTtllrrlarqldeeaeaae...........karvvfveapastspkellqkllsalglpakg 68
                 ++  +++G++G GKT ++  la  ++                  + r+++  a+ +t++  ll+++ +a+ +  + 
  MMETSP0890-20130614|41233_1 27 RRGYLLHGPPGGGKTSFVLALAGHFKLD----VcllslsddalsDDRLALALANVPTDALVLLEDIDAAFPDRQRY 98
                 56679************99999987433....13444666677655555666666666666666666666555555 PP

>> PF13086.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.16      18      41 ..      29      51 ..      13     109 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
    PF13086.1 18 gitliqGpPgtGKtttivelisql 41
                 g +l++GpPg GKt+ +++l   +
  MMETSP0890-20130614|41233_1 29 G-YLLHGPPGGGKTSFVLALAGHF 51
                 3.89**************999888 PP

>> PF13521.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0014         2       3      22 ..      31      50 ..      30      68 .. 0.87
   2 ?   -0.0   0.0      0.49   6.7e+02     103     135 ..      73     105 ..      54     120 .. 0.70
   3 ?    0.6   0.0      0.32   4.4e+02      48      68 ..     176     197 ..     129     211 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0014
    PF13521.1  3 vitGgpstGKTtlleaLaar 22
                  + G+p++GKT+ + aLa +
  MMETSP0890-20130614|41233_1 31 LLHGPPGGGKTSFVLALAGH 50
                 589**************976 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.49
    PF13521.1 103 aarekrydl.vfllppepeieqDgeRredeeeae 135
                  a+++   d+ v+l ++++ + +D +R  ++++ +
  MMETSP0890-20130614|41233_1  73 ALANVPTDAlVLLEDIDAAF-PDRQRYNTPQNST 105
                  44455567735555568888.9***999987765 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.32
    PF13521.1  48 we.edllafaeavleaqleqea 68 
                  +  +++ +fa a l+a leq++
  MMETSP0890-20130614|41233_1 176 ENdQRPRDFANAALRASLEQLE 197
                  2223455555555555555555 PP

>> PF12522.3  Cytomegalovirus glycoprotein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.8    0.0019       2.6      10      26 ..     234     250 ..     232     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0019
    PF12522.3  10 agSSGNnSSTSTSatTs 26 
                  a+SSG n STS+Sa  +
  MMETSP0890-20130614|41233_1 234 ASSSGHNLSTSSSANEP 250
                  89***********9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       387  (0.028306); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        10  (0.000731422); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.38s 00:00:01.02 Elapsed: 00:00:00.85
# Mc/sec: 727.36
//
Query:       MMETSP0890-20130614|41238_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   13.5   0.4      0.041   13.3   0.3    1.1  1  PF08287.6 Spc19


Domain annotation for each model (and alignments):
>> PF08287.6  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3     3e-06     0.041      53      96 ..      23      66 ..      18      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3e-06
    PF08287.6 53 aAkqslaeeiePqvekllsklekeleklqrkeetLkakleLqkl 96
                 + +++l+  i P ++ l +++ek l+ l+++e+  ++ l Lq+l
  MMETSP0890-20130614|41238_1 23 RDRLNLRGLIPPRIKSLDEQVEKVLSALRKEESDVRKNLYLQDL 66
                 668899999*****************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      464  (0.033938); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.40s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 210.41
//
Query:       MMETSP0890-20130614|41244_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00042   20.3   0.1    0.00064   19.7   0.1    1.3  1  PF05641.7 Agenet domain
     0.0078   15.7   0.7      0.017   14.7   0.5    1.6  1  PF11717.3 RNA binding activity-knot of a chromodomain


Domain annotation for each model (and alignments):
>> PF05641.7  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   9.4e-08   0.00064      15      67 ..      44      89 ..      40      90 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 9.4e-08
    PF05641.7 15 glrgaWfrAkVlkelkeskykveyddlsledgeskllketvdlrrlRPvpppl 67
                 +  ++W++A Vl ++++  + v y   ++e       +e++++ r+ P pp++
  MMETSP0890-20130614|41244_1 44 DAYDCWYPAQVLAVEND-HALVHYIGWEDE------WNEWLPFARIAPLPPET 89
                 5689*************.******999999......99************986 PP

>> PF11717.3  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   2.4e-06     0.017      14      53 ..      47      82 ..      34      84 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.4e-06
                 TEEEEEEEEEEEE----EEEEEE-----SS--EEE-TTTS CS
    PF11717.3 14 gelrkAeilsirtkkgkyeYYVHYeefNkRlDeWVtaeri 53
                 + +++A++l ++ ++      VHY ++   ++eW +  ri
  MMETSP0890-20130614|41244_1 47 DCWYPAQVLAVENDHA----LVHYIGWEDEWNEWLPFARI 82
                 5577777777777543....7***************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       174  (0.0127267); expected 273.4 (0.02)
Passed bias filter:                      170  (0.0124342); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.35s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 436.06
//
Query:       MMETSP0890-20130614|41250_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    7.8  10.4        1.6    8.8   5.6    1.5  2  PF03234.9 Cdc37 N terminal kinase binding


Domain annotation for each model (and alignments):
>> PF03234.9  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.24   3.3e+03     152     160 ..      40      48 ..      23      62 .. 0.46
   2 ?    8.8   5.6   0.00012       1.6       2      17 ..      65      80 ..      64      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.24
    PF03234.9 152 kkleeleke 160
                  +k++++ + 
  MMETSP0890-20130614|41250_1  40 QKMTDILHT 48 
                  333322222 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00012
    PF03234.9  2 idYskWdkiElSDDsD 17
                 idYskWd+++  DD+D
  MMETSP0890-20130614|41250_1 65 IDYSKWDNLDSDDDDD 80
                 9*********777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       464  (0.033938); expected 273.4 (0.02)
Passed bias filter:                      394  (0.028818); expected 273.4 (0.02)
Passed Vit filter:                        37  (0.00270626); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.79
# Mc/sec: 291.20
//
Query:       MMETSP0890-20130614|41243_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-33  113.8   0.0      5e-32  110.5   0.0    2.3  3  PF00534.15 Glycosyl transferases group 1
    3.2e-17   62.8   0.8    7.3e-16   58.4   0.1    2.7  3  PF13692.1  Glycosyl transferases group 1
    3.4e-06   27.1   0.0      7e-06   26.1   0.0    1.5  1  PF13524.1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PF00534.15  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.094   4.3e+02      32      60 ..     229     255 ..     216     285 .. 0.66
   2 ?   -3.6   0.0       1.2   5.7e+03      90     102 ..     417     429 ..     414     436 .. 0.76
   3 !  110.5   0.0   1.1e-35     5e-32      17     171 ..     489     646 ..     477     647 .. 0.97

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.094
                  HHHHHHHCSTT..GGGEEEEE--....--B-HH CS
   PF00534.15  32 llikafallkeqenpnlklvivG....dgeeek 60 
                  l++ +  ++  +++++++lv+vG    d     
  MMETSP0890-20130614|41243_1 229 LALNS--KIHHNMKEQIQLVFVGsckmD----G 255
                  44443..455668999999999955332....2 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.2
                  HTTECEEEE--SS CS
   PF00534.15  90 yrnadifvlpsrs 102
                  + + d++v ps++
  MMETSP0890-20130614|41243_1 417 LDAVDVLVAPSHY 429
                  67789*******9 PP

  == domain 3    score: 110.5 bits;  conditional E-value: 1.1e-35
                  EEEE---BSTTT-HHHHHHHHHCSTT..GGGEEEEE----B-HHHHHHHHHH---EEE-----HHH....HHHHHTTECEEEE--SS...B---HHHHHHHH----EEEE-TTBCCGGG-SSG.GGEE-TT-HHHHHHHHHHHHH-HHHHHHHHHHHHH CS
   PF00534.15  17 iilsvgrlekeKgvdllikafallkeqenpnlklvivGdgeeekelkklaeelelsdnvifvgevp.redleelyrnadifvlpsrs...EgfGivllEAmaaglpviasnvggpaeivkdgvtGllvkpkdaealaeaiekllkdeelrerlgenark 171
                  ++++++r+ +eK + ll+ a+a + eq +p +++vivG+g+ +  l +la++++++  v+f g v   + + e y + d++v ps +   E ++i+ lEAm++glpv+++ vgg+ e++++ ++G+l+ ++++  la ai  ll+d e+r+rlg  ar+
  MMETSP0890-20130614|41243_1 489 TVGFLARVAPEKSPGLLLHAAASVLEQ-RPFTRFVIVGHGDALPALAELAHAYGIQGAVHFAGAVYgAQSVAERYAAFDLIVNPSLRawsETLCIANLEAMSLGLPVVSYGVGGIGEYLRHEQNGILINSTNPLILATAILNLLQDSEKRQRLGSTARQ 646
                  789***********************8.*******************************************************************************************************************************9997 PP

>> PF13692.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.93   4.2e+03      33      50 ..     241     267 ..     231     311 .. 0.55
   2 ?    1.6   0.0     0.055   2.5e+02      65     102 ..     414     451 ..     357     464 .. 0.66
   3 !   58.4   0.1   1.6e-19   7.3e-16       4     135 .]     489     633 ..     487     633 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.93
    PF13692.1  33 pdvelviiGk....gpd.....elarl 50 
                  ++++lv++G+    g +     ++arl
  MMETSP0890-20130614|41243_1 241 EQIQLVFVGSckmdGQKtiwleQFARL 267
                  478999999854432224433235555 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.055
    PF13692.1  65 aellasadvglaplrfgeglplKlleylaaGlPvvasd 102
                  + +l + dv++ap+ ++++  + ++       Pv++ +
  MMETSP0890-20130614|41243_1 414 PHALDAVDVLVAPSHYAATHESIIFAIGNREIPVIVVN 451
                  5668899*******998877777777777777777665 PP

  == domain 3    score: 58.4 bits;  conditional E-value: 1.6e-19
    PF13692.1   4 ligssgsltndkdleelleealprlreklpdvelviiGkgpd..elarl.....lep.nveflgfv...eelaellasadvglapl..rfgeglplKlleylaaGlPvvasdi.gaeglpeeegvgglv.addpeelaealvrlled 135
                  ++g++++ +++k+   ll+ a + + e++p  ++vi+G+g++  +la+l       +  v+f g+v     +ae +a++d+++ p+   ++e+l++  le+++ GlPvv++ + g  +++ +e++g+l+ + +p  la+a+  ll+d
  MMETSP0890-20130614|41243_1 489 TVGFLARVAPEKSPGLLLH-AAASVLEQRPFTRFVIVGHGDAlpALAELahaygI-QgAVHFAGAVygaQSVAERYAAFDLIVNPSlrAWSETLCIANLEAMSLGLPVVSYGVgGIGEYLRHEQNGILInSTNPLILATAILNLLQD 633
                  5899999********9**9.779999*************8776567777544533.269*******99568**************95436669********************778899988999999999*************987 PP

>> PF13524.1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.5e-09     7e-06      13      89 ..     582     660 ..     567     662 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.5e-09
    PF13524.1  13 lrlfEaaacGtpvvtddtsgleelfepgkeivlfe..dleelaeklryllanpeereaiaeaarervlaehtyehraeq 89 
                    ++Ea+  G pvv+  + g++e+++++++++l++  ++  la ++  ll++ e+r++++  ar+ vl ++ +e+ +++
  MMETSP0890-20130614|41243_1 582 IANLEAMSLGLPVVSYGVGGIGEYLRHEQNGILINstNPLILATAILNLLQDSEKRQRLGSTARQTVLDNFLVENQIRK 660
                  5689*******************************899999999***************************99998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       263  (0.0192364); expected 273.4 (0.02)
Passed bias filter:                      236  (0.0172616); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.87
# Mc/sec: 1892.30
//
Query:       MMETSP0890-20130614|41252_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-06   25.6   0.5    4.2e-06   25.6   0.3    1.7  2  PF00854.16 POT family
  ------ inclusion threshold ------
      0.054   12.0   1.1      0.061   11.8   0.7    1.1  1  PF07168.6  Ureide permease
      0.063   11.2   0.7      0.069   11.1   0.5    1.0  1  PF03137.15 Organic Anion Transporter Polypeptide (OATP) family
        1.3    9.3   8.8       0.54   10.5   3.1    2.1  2  PF13781.1  DoxX-like family
        7.1    6.5   8.9       0.76    9.6   2.3    1.9  2  PF13425.1  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> PF00854.16  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.3   1.5e-09   4.2e-06     284     371 ..       1      81 [.       1      83 [. 0.90
   2 ?   -0.6   0.1      0.14     4e+02       5      33 ..     102     130 ..      98     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.5e-09
   PF00854.16 284 nltllqrfgvGealltvanvlaaivelkrlkyakalgltsktwtvplsilallpelflsgvglagalefaptelpksmkslftllsvl 371
                  n+t   r++ G+a+ ++a+++aa v++    +a++l++    w++p  +l+++ e+++s +gl+  +  ap++l++ ++s+f+l++++
  MMETSP0890-20130614|41252_1   1 NPTPALRIKCGMAFASAAFFVAAFVDA----HAEKLHI---LWQLPQIFLISIAEILVSVTGLETSYAWAPATLKSTITSAFLLTTAV 81 
                  689999*********************....5555544...577***************************************99876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.14
   PF00854.16   5 llgsilyaiGhvlltlaaippslsssvhl 33 
                  +l +++++i  +l+++  +p++ + sv++
  MMETSP0890-20130614|41252_1 102 FLCALIMLITLFLFSTLLSPSFDNPSVQT 130
                  67788888888888888888887666665 PP

>> PF07168.6  Ureide permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   2.2e-05     0.061      72     148 ..      41     119 ..      12     139 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
    PF07168.6  72 vllalaggvvlslgnlasqyafafvglsvtevitasitvvigttln..yflddkinkaeilfpgvacfliavflgsavh 148
                  ++l     +++s+  l + ya+a   l  t   +  +t  +g +    +f    + ++++lf     +li++fl s++ 
  MMETSP0890-20130614|41252_1  41 IFLISIAEILVSVTGLETSYAWAPATLKSTITSAFLLTTAVGDAAAgvFFATLSLSRTKLLFLCALIMLITLFLFSTLL 119
                  4555556799*****************998777777899999765433788889*******************988765 PP

>> PF03137.15  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   2.5e-05     0.069     294     395 ..      20     119 ..       8     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.5e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03137.15 294 fpkvlkrlltnklfmlvvlasvleslviaglstFlpKylEtqyslsaskAnlliGvvalpaaavgillgGlivkkfklsakkvaklaillallsllfillll 395
                  f++++     +kl +l  l +++ ++++  l++ +   lEt y  ++++ +  i    l + avg   +G++   ++ls  k + l++l++l++l++ ++ll
  MMETSP0890-20130614|41252_1  20 FVAAFVDAHAEKLHILWQLPQIFLISIAEILVSVTG--LETSYAWAPATLKSTITSAFLLTTAVGDAAAGVFFATLSLSRTKLLFLCALIMLITLFLFSTLL 119
                  566666677777777777778887777777777665..9**********99999999999******************************999999866554 PP

>> PF13781.1  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31   8.5e+02      32      50 ..      35      53 ..      13      61 .. 0.71
   2 ?   10.5   3.1    0.0002      0.54      27      82 ..      65     122 ..      53     123 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.31
    PF13781.1 32 elaslllilgglldialGl 50
                  ++ + + l+++++i++ +
  MMETSP0890-20130614|41252_1 35 LWQLPQIFLISIAEILVSV 53
                 4666777777788877655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0002
    PF13781.1  27 aglsaelaslllilgglldialGlllll..rrrrrlllllqialllayllavalllpe 82 
                  a l++++ s++l+ +++ d a G+++++    r++ll+l ++++l+ ++l+ +ll p+
  MMETSP0890-20130614|41252_1  65 ATLKSTITSAFLLTTAVGDAAAGVFFATlsLSRTKLLFLCALIMLITLFLFSTLLSPS 122
                  567888899999999999999999765422677789999***************9997 PP

>> PF13425.1  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.6      0.28   7.7e+02      27      50 ..      16      47 ..       8      83 .. 0.49
   2 ?    9.6   2.3   0.00028      0.76      26      69 ..      85     129 ..      60     147 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.28
    PF13425.1 27 llvvllvlll.....elkkkkk...lllllai 50
                  +++++ +++     +l+  +    ++l+ ++
  MMETSP0890-20130614|41252_1 16 SAAFFVAAFVdahaeKLHILWQlpqIFLISIA 47
                 33333333445544422222223223333332 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00028
    PF13425.1  26 allvvllvlllelkkkkklllllailvviallvlgl.rfsries...d 69 
                  a    ++++ l   ++ kll+l+a++ +i l+++++ ++ ++ +   +
  MMETSP0890-20130614|41252_1  85 AAG--VFFATL-SLSRTKLLFLCALIMLITLFLFSTlLSPSFDNpsvQ 129
                  222..222333.445677888888888888887776544444434443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       672  (0.0491516); expected 273.4 (0.02)
Passed bias filter:                      343  (0.0250878); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.47s 00:00:00.85 Elapsed: 00:00:00.69
# Mc/sec: 552.20
//
Query:       MMETSP0890-20130614|41256_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00061   19.8   0.0     0.0055   16.7   0.0    2.0  2  PF06480.10 FtsH Extracellular


Domain annotation for each model (and alignments):
>> PF06480.10  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.1e-07    0.0055      32     110 .]      14      76 ..       4      76 .. 0.81
   2 ?    0.7   0.0     0.037   5.1e+02       2      19 ..      92     108 ..      90     130 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.1e-07
   PF06480.10  32 yseFledleagnvskvvvdestispalirrptgdgvsktkkgnstttyytptlgsvdslekkLeealkelgvdpesvpq 110
                   seF++ +e+++v++v++d+   +          +v+ +++g++  ++            +++  al++++v ++++p+
  MMETSP0890-20130614|41256_1  14 LSEFYDSVEKDQVERVTFDDAGKA----------LVAVDSDGGRHRVEILSA------EGPDILTALRKHNVQFAVQPP 76 
                  49*****************55555..........888888888888876666......456699999999999998886 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.037
   PF06480.10   2 llwlllalvlllllnslf 19 
                  l++l+ +l+ l+lln   
  MMETSP0890-20130614|41256_1  92 LFPLI-FLGGLFLLNRRG 108
                  44444.444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      258  (0.0188707); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.45s 00:00:00.80 Elapsed: 00:00:00.57
# Mc/sec: 607.35
//
Query:       MMETSP0890-20130614|41255_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-05   22.7   0.0    8.5e-05   21.8   0.0    1.4  1  PF08511.6 COQ9


Domain annotation for each model (and alignments):
>> PF08511.6  COQ9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.2e-09   8.5e-05       8      74 ..     110     180 ..     106     185 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.2e-09
    PF08511.6   8 lkelwrladaiwra..agDrst..DfnwYtKRatLsavYsstllymlqDesedfeetwaFldrrienvmkl 74 
                  ++ l+r+a +++ra  + D  +    +w ++R+ ++ vY+ t+++ l+D+s++ +++  F d+ ++ + ++
  MMETSP0890-20130614|41255_1 110 VSALARTAHELARAtlVKDDIQisPAKWRARRVAVAVVYALTEVRALSDSSPNLSDSITFSDKLVDTLADA 180
                  566666666666541134433223679*********************************99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       455  (0.0332797); expected 273.4 (0.02)
Passed bias filter:                      321  (0.0234786); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.41s 00:00:00.98 Elapsed: 00:00:00.76
# Mc/sec: 955.39
//
Query:       MMETSP0890-20130614|41268_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.46    9.9   7.6       0.51    9.8   5.3    1.1  1  PF03962.10 Mnd1 family
        1.6    8.8   6.2         16    5.6   4.3    2.0  1  PF13864.1  Calmodulin-binding
        5.9    7.1   7.2          6    7.0   4.2    1.4  1  PF13846.1  Domain of unknown function (DUF4196)


Domain annotation for each model (and alignments):
>> PF03962.10  Mnd1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.3   0.00011      0.51      73     146 ..      15      92 ..       3      95 .] 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00011
   PF03962.10  73 klkkeleelkqrikelqaeieke..kkkreeteereelleelkeleeelkklkkele..klakldpekveklkeetev 146
                  +  +  + + q ++e ++ei+ +  +++ ++++e ++ll++ + l++el++ ++e++  ++++ld e++ +++++  +
  MMETSP0890-20130614|41268_1  15 QCHSPQQGIHQVVEEDEEEIQFDdlQQQEDNEDELNTLLHQGEVLRDELEEERVEFQklDFTHLDGETLAQIQRKAAE 92 
                  4444445556666666666665521555555589999********************88899*********9998766 PP

>> PF13864.1  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.3    0.0036        16      15      78 ..       4      67 ..       2      93 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0036
    PF13864.1 15 aeekeeleaqeeeqe.apkgvrllseeErlellegLkkkweelnkelqklplvldtlskkrrkee 78
                 ++ek+ ++++e+ ++ ++  +++++e+E +   ++L+++++  ++el+ l +  + l+ +   e+
  MMETSP0890-20130614|41268_1  4 EKEKNPWDKEEQCHSpQQGIHQVVEEDEEEIQFDDLQQQED-NEDELNTLLHQGEVLRDELEEER 67
                 46677777777777756666777888888888888877544.46666666666555555554444 PP

>> PF13846.1  Domain of unknown function (DUF4196)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.2    0.0013         6      12      59 ..      27      72 ..      24      79 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0013
    PF13846.1 12 deeelnetkhedLpdsekikgqeegdrnkrtGqiieeDseeenvkigk 59
                  ee+ +e++++dL+++e  +  +e +   ++G ++ +++eee v+  k
  MMETSP0890-20130614|41268_1 27 VEEDEEEIQFDDLQQQEDNE--DELNTLLHQGEVLRDELEEERVEFQK 72
                 589999********999764..444555799***********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1068  (0.0781159); expected 273.4 (0.02)
Passed bias filter:                      623  (0.0455676); expected 273.4 (0.02)
Passed Vit filter:                        49  (0.00358397); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.49s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 446.38
//
Query:       MMETSP0890-20130614|41266_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   16.5   5.5     0.0063   15.9   3.8    1.2  1  PF01442.13 Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.013   14.4   0.4      0.015   14.1   0.3    1.1  1  PF07693.9  KAP family P-loop domain
       0.12   12.6   2.6        0.3   11.3   1.8    1.7  1  PF04102.7  SlyX
       0.12   11.1   1.6       0.19   10.5   1.1    1.2  1  PF07586.6  Protein of unknown function (DUF1552)
       0.22   11.4   5.3       0.41   10.5   3.7    1.4  1  PF11068.3  Protein of unknown function (DUF2869)


Domain annotation for each model (and alignments):
>> PF01442.13  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.8   2.3e-06    0.0063      81     157 ..     253     328 ..     241     333 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.3e-06
                  HHHHHHHHHHHHHHHHHHHHH------------HHHHHH----------XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01442.13  81 eelreqlnrdveelreqLapvaeelrsrlrqnvealkerLaPyaeelrqklaerleelkesltpqaeelkaqlseqv 157
                  ++ r++ ++d+e++ + L++v+   r+r+ +  +++++ L +++ +  ++l+e le ++++l+  +ee++a +++++
  MMETSP0890-20130614|41266_1 253 MKFRDRFEEDMEKADQELEQVMDKERQRIDELKKEVRALLDALSSQEDARLNEYLELRSKTLA-TREEYEAGVAKRI 328
                  5778899************************************************99999996.8899999888765 PP

>> PF07693.9  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   5.5e-06     0.015     138     196 ..     244     310 ..     144     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.5e-06
    PF07693.9 138 s........raakleeeaplkklqteveelradiekkLdalqkrlVvviDdLDRcepeevlelleav 196
                  +         ++++++e+ ++k  +e e+++ +  + +d+l+k++  ++D+L + e+++++e le+ 
  MMETSP0890-20130614|41266_1 244 EvltasrteMKFRDRFEEDMEKADQELEQVMDKERQRIDELKKEVRALLDALSSQEDARLNEYLELR 310
                  0333444457899***********************************************9999986 PP

>> PF04102.7  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   0.00011       0.3      17      53 ..     264     300 ..     256     308 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
    PF04102.7  17 edtieeLNevvaeqqkeidrlqrqlrllaerlkelee 53 
                  e++ +eL +v+ + +++id+l++++r+l + l + e+
  MMETSP0890-20130614|41266_1 264 EKADQELEQVMDKERQRIDELKKEVRALLDALSSQED 300
                  566689**************************99884 PP

>> PF07586.6  Protein of unknown function (DUF1552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   6.8e-05      0.19     132     191 ..     248     308 ..     231     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.8e-05
    PF07586.6 132 endpralFdrLFgslsag.keqaaarlerrrsvLdavledakslrrklgkedrakLdeYlt 191
                   ++ +  F+  F +++++ +++ ++ ++++r+ +d +++++++l   l++++ a+L eYl+
  MMETSP0890-20130614|41266_1 248 ASRTEMKFRDRFEEDMEKaDQELEQVMDKERQRIDELKKEVRALLDALSSQEDARLNEYLE 308
                  555666688889888888455555669999*****************************98 PP

>> PF11068.3  Protein of unknown function (DUF2869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.7   0.00015      0.41      19      80 ..     253     314 ..     241     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
    PF11068.3  19 eelqeelqeqleqleqelqqLefqkkkalkeikkqsaqqieeiqqqvekekakreeqkkqll 80 
                   + +  ++e++e+++qel+q   ++++ ++e+kk+  + ++++ +q ++  ++++e + + l
  MMETSP0890-20130614|41266_1 253 MKFRDRFEEDMEKADQELEQVMDKERQRIDELKKEVRALLDALSSQEDARLNEYLELRSKTL 314
                  456789***************************99888888888888888888888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1129  (0.0825775); expected 273.4 (0.02)
Passed bias filter:                      676  (0.0494441); expected 273.4 (0.02)
Passed Vit filter:                       106  (0.00775307); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.42s 00:00:01.26 Elapsed: 00:00:01.00
# Mc/sec: 860.29
//
Query:       MMETSP0890-20130614|41281_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       217  (0.0158719); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.37s 00:00:00.69 Elapsed: 00:00:00.76
# Mc/sec: 173.42
//
Query:       MMETSP0890-20130614|41279_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.64   10.2  20.8       0.16   12.1   1.4    3.4  3  PF08232.7  Striatin family
        2.3    7.0   9.0        1.1    8.0   4.3    1.9  2  PF01544.13 CorA-like Mg2+ transporter protein
        3.2    7.3  20.8         10    5.6   5.4    3.9  3  PF02996.12 Prefoldin subunit


Domain annotation for each model (and alignments):
>> PF08232.7  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.047   2.2e+02      50      81 ..     156     191 ..     137     223 .. 0.50
   2 ?   12.1   1.4   3.5e-05      0.16      32      93 ..     224     283 ..     222     294 .. 0.82
   3 ?    5.9   6.2    0.0029        13      26      95 ..     271     340 ..     267     344 .] 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.047
    PF08232.7  50 dLkrrvkmLekalkqeraklkslkagveses....k 81 
                  d + r++ Le +l   r+  +  + +++  +    +
  MMETSP0890-20130614|41279_1 156 DSTDRIQSLEIELALLREAAEDRSMAEAIITdlraQ 191
                  445566666666666666555544444433222220 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.5e-05
    PF08232.7  32 arIakLeGerrglenlkedLkrrvkmLekalkqeraklkslkagveseskqeskssaeeeel 93 
                  arI++Le +    + +k+d  + +k Le++    +a+l+s+k++ +++++++s ++++++ +
  MMETSP0890-20130614|41279_1 224 ARIIELEAQLH--TPVKDDKSEAIKVLEEKCASLEARLQSSKEALAHSEDKASLEERCATLE 283
                  8******9999..89*************************9999999987776666654433 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0029
    PF08232.7  26 EraEmkarIakLeGerrglenlkedLkrrvkmLekalkqeraklkslkagveseskqeskssaeeeelee 95 
                  ++a +  r a Le+     ++  +  ++r++ Le+al q +++++++ a+ ++e + +  +++ e++l++
  MMETSP0890-20130614|41279_1 271 DKASLEERCATLESALSAKTQAADASTKRIEALEEALAQAKKENEEALAQIKNEVQISAREQDLEQQLAQ 340
                  6888999**********************************99999888877775444444444444433 PP

>> PF01544.13  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.38   1.8e+03     191     216 ..     151     176 ..     141     180 .. 0.73
   2 ?    8.0   4.3   0.00025       1.1      91     225 ..     185     310 ..     174     329 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.38
   PF01544.13 191 keylrdlldelerllemaealrerlr 216
                  +  l+d +d++++l+ ++ +lre ++
  MMETSP0890-20130614|41279_1 151 QAALKDSTDRIQSLEIELALLREAAE 176
                  34488888888888888888887665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00025
   PF01544.13  91 ldeiikrlekegekpkspgellyelldeivdryfeilekleeeldeledeledetkkellreilqlrrelvrlrrallplrdvlkrllrrkdkkllteedkeylrdlldelerllemaealrerlrslqdtylsl 225
                  + +++++++    k+ +p++  y+l +      ++ l+  + ++ ele +l++  k++  + i  l+++++ l+  l + +++l    +  dk  l+e     + +l   l+   + a+a  +r++ l +++++ 
  MMETSP0890-20130614|41279_1 185 ITDLRAQVT--ALKEATPDDSEYKLAQAAQRIAEDQLDIANARIIELEAQLHTPVKDDKSEAIKVLEEKCASLEARLQSSKEAL-AHSE--DKASLEER----CATLESALSAKTQAADASTKRIEALEEALAQA 310
                  344555555..58899999999999999999999**************************************************.5555..55555554....56666666666666666666666666665554 PP

>> PF02996.12  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3     0.056   2.5e+02      92     102 ..     160     170 ..     143     200 .. 0.52
   2 ?    5.6   5.4    0.0023        10      71     107 ..     237     273 ..     158     284 .. 0.72
   3 ?    5.6   2.4    0.0024        11       8      53 ..     286     329 ..     279     338 .. 0.59

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.056
                  HHHHH---HHH CS
   PF02996.12  92 qlekleeelek 102
                   +++le el+ 
  MMETSP0890-20130614|41279_1 160 RIQSLEIELAL 170
                  22222222222 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0023
                  EEEEHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH- CS
   PF02996.12  71 veksleeAiellkkkleelekqlekleeeleklkdqi 107
                  v+ + +eAi++l++k+++le  l++ +e+l+   d++
  MMETSP0890-20130614|41279_1 237 VKDDKSEAIKVLEEKCASLEARLQSSKEALAHSEDKA 273
                  566899************************9998886 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0024
                  HHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--B-EE-----EE-- CS
   PF02996.12   8 lqaeleqlkeaieelektletlktlkkedegkevlvplgaglyvka 53 
                  l a++++ +++ +++e ++e+l   kk  e++e+l +++ ++++ a
  MMETSP0890-20130614|41279_1 286 LSAKTQAADASTKRIEALEEALAQAKK--ENEEALAQIKNEVQISA 329
                  556666666666666666666666666..55555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1491  (0.109055); expected 273.4 (0.02)
Passed bias filter:                      375  (0.0274283); expected 273.4 (0.02)
Passed Vit filter:                        51  (0.00373025); expected 13.7 (0.001)
Passed Fwd filter:                        20  (0.00146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.39s 00:00:01.46 Elapsed: 00:00:01.27
# Mc/sec: 649.09
//
Query:       MMETSP0890-20130614|41280_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                        95  (0.00694851); expected 273.4 (0.02)
Passed bias filter:                       85  (0.00621709); expected 273.4 (0.02)
Passed Vit filter:                         6  (0.000438853); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 259.61
//
Query:       MMETSP0890-20130614|41285_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   16.0   0.0      0.014   15.4   0.0    1.3  1  PF13472.1 GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> PF13472.1  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.9e-07     0.014      29     124 ..      47     208 ..      19     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.9e-07
    PF13472.1  29 agvevvnlgcsGattrd....glarleadvlallaadpdlvtltlGgNDlgf.....................................................................gdrtdaslekyeanlaaildalreaapvllvgyp.pvlpadreppaagl 124
                  +++ vvn ++ +++  d     l  ++a v     ++ d++++++GgND+                                                                          td   +++++ + +++++ +++  v+ + y+  v ++++     ++
  MMETSP0890-20130614|41285_1  47 PQYGVVNTAVEATCLNDrsrfHLLPQDAYVR-DNIRKNDILVVSIGGNDIALtpllctcaniipllcfgaccgervidsiscscppdlytptcgffdcgclccglpgclsgllgcppglgyF--TDLFGNRVRSYISKLIARTKPKLVVICMIYYlDVHGKGS-----WA 208
                  4555666666666655533334434444443.2799*******************************************************************************9998542..556678888888888888898885555555437777766.....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       345  (0.0252341); expected 273.4 (0.02)
Passed bias filter:                      233  (0.0170421); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 1001.22
//
Query:       MMETSP0890-20130614|41291_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.022   14.3   0.0    1.2  1  PF13768.1  von Willebrand factor type A domain
      0.047   13.3   0.0      0.076   12.7   0.0    1.3  1  PF02246.10 Protein L b1 domain


Domain annotation for each model (and alignments):
>> PF13768.1  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.2e-06     0.022      83     151 ..       6      83 ..       1      88 [. 0.68

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.2e-06
    PF13768.1  83 gaLkealrqp.akpgearhvlllsdgss.tsgaervlqliraaa.......rkirifalglgetlsadmlqeLAeagg 151
                  + L+e + +    +g+++++++l dgs+ t+++++v+++ ++a+        k+      + ++l+a++l+eL ea +
  MMETSP0890-20130614|41291_1   6 QNLEEESNTNeNEEGRRKRIIILEDGSIpTQKEDQVIKDDEKAVrnsernaDKLAALHAKFRADLDAAPLDELKEAAR 83 
                  55666665445788999**************99888766655552222222446666666677888888888877765 PP

>> PF02246.10  Protein L b1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.076       4      56 ..      16      71 ..      13      76 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
                 X--SS-EEEEEE-----EEEEEE---H...HHHHHHHHHHHHHHHTT---EEEEEE CS
   PF02246.10  4 pkeevtikanlifadGktqtaefkGtf...aeataeayryadllkkenGeytadle 56
                 ++ee   k  +i++dG++ t +        ++a+ ++ r ad l+  + ++ adl+
  MMETSP0890-20130614|41291_1 16 ENEEGRRKRIIILEDGSIPTQKEDQVIkddEKAVRNSERNADKLAALHAKFRADLD 71
                 6788888999******9876654443322289**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       732  (0.0535401); expected 273.4 (0.02)
Passed bias filter:                      513  (0.0375219); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:01.10
# Mc/sec: 224.39
//
Query:       MMETSP0890-20130614|41289_1  [L=1186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-32  112.7   0.0    3.5e-32  111.6   0.0    1.5  1  PF00454.22 Phosphatidylinositol 3- and 4-kinase
    1.9e-09   36.8   0.0    3.4e-09   36.0   0.0    1.3  1  PF00613.15 Phosphoinositide 3-kinase family, accessory domain (PIK domain)
    3.3e-08   33.5   0.2    8.6e-08   32.2   0.1    1.7  1  PF00169.24 PH domain
    3.2e-05   23.7   1.0    7.7e-05   22.4   0.7    1.6  1  PF12814.2  Meiotic cell cortex C-terminal pleckstrin homology
  ------ inclusion threshold ------
       0.12   11.2   0.0       0.28   10.0   0.0    1.6  1  PF13575.1  Domain of unknown function (DUF4135)
       0.14   11.4   0.1       0.25   10.5   0.1    1.3  1  PF06455.6  NADH dehydrogenase subunit 5 C-terminus


Domain annotation for each model (and alignments):
>> PF00454.22  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   1.6e-35   3.5e-32       5     222 ..     863    1065 ..     860    1079 .. 0.88

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 1.6e-35
                   EE-----HHHHHHHHHHHHHHHHHHHCTT---------B--SSS----EE--TTEEEHHHHHCH--------T.....................THHHHHHHHHSSSHHHHHHHHHHHHHHH---HHHHHH-------CCCEEE.E----EEE--------.....----SSSS--SS---HHHHHH-------SHHHHHHHHHHHHHHHHHHCTHHHHHHHH CS
   PF00454.22    5 ifkggadlrqdervlqlvrlfnkllsgegalrelaaYlviplasksglielvdsaltlaevprtdlvkkesknfndkrkkkvklfelqkkkkpkvgslqlFlkeypdaeeflearsqfarslaklsvldyilgngDRhldNilvdkktgklvhIDfGlclp.....skheekpelvpfrltrpfseemreyldpskdeglfresceeilealrrdqdlltrlL 222 
                   ifk  +dlrqd+ +lq++r ++ l+   g    l++Y v+++  ++g ie+v  a ++ae+++ +   +  + +n                   + ++++++++++d+ +f  a+++f+ s+a ++v++y+lg++DRh++Ni++   +gkl+hIDfG+ l+       ++ k+e+   +lt+++ + ++e+ +    e++++++   i  +  r  ++l+++L
  MMETSP0890-20130614|41289_1  863 IFKTRDDLRQDAAMLQVMRQMDALWLAAGIECWLTTYTVMATDVDVGWIEVVMGAKETAEIQSVYGSGALGAFQN-------------------NTLHNYLVEHNEDPKAFAGAQERFVASCAACCVATYLLGIADRHNGNIML-LPSGKLFHIDFGHVLGnfkklKGTNIKREKTKLVLTPEMMYIINEGRGVHLNENFVQRCISLIAVLQQRGNGALLHTL 1065
                   8****************************************************************9666666666...................9*************************************************.*****************7765557789****************99888888888887776655555555555555555 PP

>> PF00613.15  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.5e-12   3.4e-09      98     177 ..     567     724 ..     565     732 .. 0.91

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.5e-12
                  HHHHCCS-HHHHHHCHHHHHHHGGG-............................................................................SSSS-HHHHHHHHHHTT-T.T---HHHHHHHCCCC-CCC.HCCHHHHHHHHHHH-- CS
   PF00613.15  98 VkvLekasdeelllYllQLVqalkye............................................................................pikdsalarfLlkralknq.rlghflfWylkseiedkev.serfgsllesllrkls 177
                  V++L  + d  l+ Y++QLVq lk +                                                                                s+l +fL+ ral+n+  +g ++fW l+se+ +  + + + g ll ++l +++
  MMETSP0890-20130614|41289_1 567 VSKLTAMPDALLEPYIPQLVQGLKTDvdtdqenyeawrassptsigtndddntlsligsrhstgtllesehqimapikmfsttspqgakkkaskksptqsisSPLLSPLVKFLFTRALRNPtFVGVSFFWALRSEMSKGGLtAMKHGALLAAYLGAVG 724
                  899************************************************************************************************9998899***************678************7665546666667766666655 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   3.8e-11   8.6e-08       3      99 ..      82     173 ..      80     176 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 3.8e-11
                  BEEEEEEEETSSSCEEEEEEEEETTEEEEESSSST.TCECSECEEEECGGE.EEEEEEETTSSCTTSSSSEEEEEETTTCEEEEEESSHHHHHHHHHHH CS
   PF00169.24   3 keGyllkksellktwkkryfvLtsnyLlyfksskk.ksykapkgsiplndc.tvkkasstkfalqkesnnyfeitfkdvesyllsaeseeerkrWvqal 99 
                  + G+l k+++  +tw +r++  ++++Ll+ + +k  ++  + +g + l+++ +v++ ++       e++  f ++++d+ ++ + ae+e e+k+W++ l
  MMETSP0890-20130614|41289_1  82 YRGILEKQKGTMRTWPRRWVWVKEGRLLWAEIKKNvNEPGKERGGVFLSEIiNVERKPTE------EKPWQFIVKTEDR-TINFAAENENELKNWIDVL 173
                  689******************************999999************777777775......8************.****************987 PP

>> PF12814.2  Meiotic cell cortex C-terminal pleckstrin homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.7   3.4e-08   7.7e-05      30     122 ..      96     178 ..      77     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.4e-08
    PF12814.2  30 rhkRyvwvhpyertllWsskkpksekasekksksvkiesvlsvkdenplpkglekanfnksililtpkralkltaetrerhevWltaLsylle 122
                    +R+vwv+  e  llW + k + +++ + + + v ++++ +v+ +  ++       +    ++ t++r+++++ae++++ + W+ +Ls l++
  MMETSP0890-20130614|41289_1  96 WPRRWVWVK--EGRLLWAEIKKNVNEPGK-ERGGVFLSEIINVERKPTEE-------KPWQFIVKTEDRTINFAAENENELKNWIDVLSPLNQ 178
                  568****97..57799***8765555544.5677*********7433333.......345789*************************98876 PP

>> PF13575.1  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012      0.28     143     194 ..     968    1020 ..     945    1053 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
    PF13575.1  143 llallylLgatDlHfENlia.egeypvliDlEtlfhpverladtgltaaaala 194 
                   +    ylLg++D H+ N++   ++  + iD+  ++ + ++l+ t++++++++ 
  MMETSP0890-20130614|41289_1  968 CCVATYLLGIADRHNGNIMLlPSGKLFHIDFGHVLGNFKKLKGTNIKREKTKL 1020
                   66789****************5567*********************9999865 PP

>> PF06455.6  NADH dehydrogenase subunit 5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00011      0.25     119     168 ..     894     945 ..     876     946 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
    PF06455.6 119 lsLklgqklakqlDqgWlEk.lgpkglaklllkl.skliqnlqkglikiyLl 168
                   +L++   +a+ +D gW+E+ +g+k +a++++ + s  + ++q++++  yL+
  MMETSP0890-20130614|41289_1 894 CWLTTYTVMATDVDVGWIEVvMGAKETAEIQSVYgSGALGAFQNNTLHNYLV 945
                  567778889999*******736789999998764288999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       422  (0.030866); expected 273.4 (0.02)
Passed bias filter:                      294  (0.0215038); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.63u 0.39s 00:00:02.02 Elapsed: 00:00:01.52
# Mc/sec: 1869.79
//
Query:       MMETSP0890-20130614|41290_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       528  (0.0386191); expected 273.4 (0.02)
Passed bias filter:                      405  (0.0296226); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.84
# Mc/sec: 1149.68
//
Query:       MMETSP0890-20130614|41295_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-12   45.4   0.0    2.1e-10   40.5   0.0    2.4  1  PF04755.7 PAP_fibrillin


Domain annotation for each model (and alignments):
>> PF04755.7  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.5e-14   2.1e-10       5     196 ..     123     355 ..     120     357 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.5e-14
    PF04755.7   5 rkLldaisgterGlsassddraeieelvkklealnptpaplesldlLdGkWrLlYttskell..................................pllarkklpllkvgeiyQtIdvenksvqNsve...lsg..lpllegsvsvaakfevaspkrvelkFeravlklkkl................lkglltslqdtasniaraissqlpikfrlsgeeakgwLeitYlDedLRIsRGdeGslfv 196
                  ++Ll+  + t rG++a++ +ra+i+ l ++le+++p  ap      L+G+WrL+Y++++++                                    +  ++ lpl+++g+ + tI + +   +  v+   +    lp +++ ++++a ++++s   v l+ +r+ l+l  l                + g+l   + ++++   +   +l +  r++++ a+  +  tY +++LRIsR + G lf+
  MMETSP0890-20130614|41295_1 123 QELLTKCASTARGAVATDFERADIDVLCQALEKIDPG-AP------LEGRWRLVYSSEAGIYrsspffwgfkkllknapdaplqlrnsrdtsyaenVFALTDGLPLYEIGNCFHTITSTSVVSEVEVQlklF-DslLPRASTIMTTTARAQPLS---VSLENQRG-LQLT-LestrivdstletllppVFGFLGDFSFPTESAFSQLADRLGDG-RVPPDAATVNMFATYTSDTLRISRTESGMLFI 355
                  789999****************************996.45......58**************9*********999999999999999999999997333478899999999999996665443333442233.258999999999999998887...66666665.2221.1344557777688888844555555544444333444455555.9******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       306  (0.0223815); expected 273.4 (0.02)
Passed bias filter:                      241  (0.0176273); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.62
# Mc/sec: 1410.76
//
Query:       MMETSP0890-20130614|41301_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-06   26.1   2.0    4.5e-06   26.1   1.4    2.6  3  PF13414.1  TPR repeat
    1.1e-05   25.1  11.8    2.3e-05   24.1   1.4    2.8  2  PF13424.1  Tetratricopeptide repeat
    0.00012   21.4  11.1     0.0087   15.5   0.8    4.2  5  PF00515.23 Tetratricopeptide repeat
    0.00039   20.0  17.2      0.015   15.0   0.5    4.9  5  PF07719.12 Tetratricopeptide repeat
     0.0066   16.0   6.0       0.43   10.3   0.3    3.3  3  PF13181.1  Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.3   2.0      0.011   16.3   1.4    3.7  4  PF13432.1  Tetratricopeptide repeat
      0.033   13.9  11.3      0.041   13.6   0.2    3.8  4  PF13374.1  Tetratricopeptide repeat
        0.5   10.5   5.6        7.6    6.9   1.1    3.2  2  PF13431.1  Tetratricopeptide repeat
       0.62   10.5   6.4        3.3    8.2   0.1    3.8  4  PF13174.1  Tetratricopeptide repeat
       0.62    9.8   7.8        3.8    7.4   0.2    3.5  4  PF13176.1  Tetratricopeptide repeat
        1.3    9.5   6.7         32    5.2   0.0    3.9  3  PF07721.9  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.4   3.6e-09   4.5e-06      13      63 ..       2      60 ..       1      71 [. 0.87
   2 ?   -0.9   0.0      0.93   1.2e+03      41      52 ..      93     104 ..      79     119 .. 0.58
   3 ?   -1.4   0.0       1.4   1.7e+03       3      24 ..     128     149 ..     122     151 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.6e-09
    PF13414.1 13 lfkegdydeAieayekAleldpnnae.........lyynlAlaylklgkdyeeAledyek 63
                 ++++ ++ eA  +yekAl+l  ++           ly+n + a ++lg +y++Al  ye 
  MMETSP0890-20130614|41301_1  2 ALQRSEWYEASSYYEKALKLVREHGLvinvaaesqLYNNVGWAAYQLG-EYDKALMRYET 60
                 78999****************99988888888899*************.6****877764 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.93
    PF13414.1  41 ynlAlaylklgk 52 
                  +++A a   + +
  MMETSP0890-20130614|41301_1  93 NRRAEAIAWMRQ 104
                  333333222222 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.4
    PF13414.1   3 AealkelGnalfkegdydeAie 24 
                  A+a  +lG+ l    +++eA++
  MMETSP0890-20130614|41301_1 128 ALARLRLGYLLVLHDELQEAEQ 149
                  5566677777777777777765 PP

>> PF13424.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.4   1.8e-08   2.3e-05      20      71 ..       7      60 ..       2      67 .. 0.80
   2 ?    5.3   1.7     0.014        17      24      69 ..     108     151 ..      75     152 .. 0.63

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.8e-08
    PF13424.1 20 dydeAlelyekalellrelgd..dhpdtaralnnlanlylalgdydeAleylek 71
                 ++ eA ++yekal+l re+g   + +    ++nn +++ ++lg+yd+Al  +e 
  MMETSP0890-20130614|41301_1  7 EWYEASSYYEKALKLVREHGLviNVAAESQLYNNVGWAAYQLGEYDKALMRYET 60
                 689************7777654433444788******************99985 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.014
    PF13424.1  24 Alelyekalellrelgddhpdt.aralnnlanlylalgdydeAleyl 69 
                  A    ++a   + + g d  d+ a a + l++l++ + +++eA++ l
  MMETSP0890-20130614|41301_1 108 AA---QRAASSRGLSGADAIDLgALARLRLGYLLVLHDELQEAEQVL 151
                  22...3333333334667666658999****************9975 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00081         1      14      30 ..       5      21 ..       2      25 .. 0.84
   2 !   15.5   0.8     7e-06    0.0087       2      21 ..      36      55 ..      35      59 .. 0.93
   3 ?   -1.4   0.0       1.5   1.9e+03      16      28 ..      57      69 ..      55      70 .. 0.77
   4 ?   -1.6   0.0       1.8   2.2e+03       1       9 [.      98     106 ..      90     110 .. 0.70
   5 ?    0.8   0.0       0.3   3.8e+02       1      22 [.     128     149 ..     128     150 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00081
                 TT-HHHHHHHHHHHHHH CS
   PF00515.23 14 lgkydeAleyyekALel 30
                   ++ eA  yyekAL+l
  MMETSP0890-20130614|41301_1  5 RSEWYEASSYYEKALKL 21
                 667889**********8 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 7e-06
                 HHHHHHHHHHHHTT-HHHHH CS
   PF00515.23  2 kalynlGnaylklgkydeAl 21
                 + ++n G a ++lg+yd+Al
  MMETSP0890-20130614|41301_1 36 QLYNNVGWAAYQLGEYDKAL 55
                 57*****************8 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.5
                 -HHHHHHHHHHHH CS
   PF00515.23 16 kydeAleyyekAL 28
                 +y+    ++++AL
  MMETSP0890-20130614|41301_1 57 RYETGARACDRAL 69
                 6777778999*99 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.8
                  HHHHHHHHH CS
   PF00515.23   1 akalynlGn 9  
                  a a+ + G+
  MMETSP0890-20130614|41301_1  98 AIAWMRQGA 106
                  457777765 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.3
                  HHHHHHHHHHHHHTT-HHHHHH CS
   PF00515.23   1 akalynlGnaylklgkydeAle 22 
                  a a  +lG+++    +++eA++
  MMETSP0890-20130614|41301_1 128 ALARLRLGYLLVLHDELQEAEQ 149
                  567889*****99999999986 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0009       1.1      16      32 ..       7      23 ..       2      25 .. 0.81
   2 !   15.0   0.5   1.2e-05     0.015       3      21 ..      37      55 ..      35      61 .. 0.93
   3 ?    2.3   0.0      0.15   1.8e+02      12      27 ..      90     105 ..      87     111 .. 0.73
   4 ?    3.3   0.1      0.07        87       2      22 ..     129     149 ..     128     151 .. 0.86
   5 ?   -3.0   0.1       6.9   8.6e+03       4      15 ..     167     178 ..     165     182 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0009
                 -HHHHHHHHHHHHHH-T CS
   PF07719.12 16 dyeeAleafekAleldP 32
                 ++ eA  ++ekAl+l  
  MMETSP0890-20130614|41301_1  7 EWYEASSYYEKALKLVR 23
                 6789**********965 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHTT-HHHHH CS
   PF07719.12  3 alynlGlayyklgdyeeAl 21
                 +++n G+a+y+lg+y++Al
  MMETSP0890-20130614|41301_1 37 LYNNVGWAAYQLGEYDKAL 55
                 79****************7 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.15
                  HHTT-HHHHHHHHHHH CS
   PF07719.12  12 yklgdyeeAleafekA 27 
                    l++ +eA++++++ 
  MMETSP0890-20130614|41301_1  90 KVLNRRAEAIAWMRQG 105
                  5678888999888875 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.07
                  HHHHHHHHHHHHTT-HHHHHH CS
   PF07719.12   2 ealynlGlayyklgdyeeAle 22 
                   a  +lG+++   ++++eA++
  MMETSP0890-20130614|41301_1 129 LARLRLGYLLVLHDELQEAEQ 149
                  56679**************87 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 6.9
                  HHHHHHHHHHTT CS
   PF07719.12   4 lynlGlayyklg 15 
                  + ++ la +++g
  MMETSP0890-20130614|41301_1 167 WRRRSLAQEAAG 178
                  666666666665 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0048         6      19      30 ..      10      21 ..       5      24 .. 0.90
   2 !   10.3   0.3   0.00035      0.43       2      21 ..      36      55 ..      33      60 .. 0.91
   3 ?   -0.5   0.0         1   1.3e+03       3      26 ..      80     104 ..      78     111 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0048
                 HHHHHHH---HH CS
    PF13181.1 19 kAkeylekalel 30
                 +A +y+ekal+l
  MMETSP0890-20130614|41301_1 10 EASSYYEKALKL 21
                 799*******98 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00035
                 --TTT---HHHHTT-HHHHH CS
    PF13181.1  2 kayynlGdiYrqlGdydkAk 21
                 ++y+n G +  qlG+ydkA+
  MMETSP0890-20130614|41301_1 36 QLYNNVGWAAYQLGEYDKAL 55
                 689****************7 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1
                  -TTT---HHHH.TT-HHHHHHHHH- CS
    PF13181.1   3 ayynlGdiYrq.lGdydkAkeylek 26 
                  +y n+ ++  + l++  +A++ +++
  MMETSP0890-20130614|41301_1  80 VYENIYELVHKvLNRRAEAIAWMRQ 104
                  5666666633338888889888876 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.3   1.4   8.6e-06     0.011       7      55 ..       2      60 ..       1      71 [. 0.83
   2 ?    1.3   0.3      0.42   5.2e+02      44      61 ..      92     109 ..      84     123 .. 0.64
   3 ?    0.3   2.8      0.91   1.1e+03      28      54 ..     125     151 ..     102     166 .. 0.76
   4 ?   -0.6   0.6       1.7   2.1e+03       8      28 ..     139     164 ..     132     182 .. 0.49

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.6e-06
    PF13432.1  7 llraGdydeAlaaleaalala.........PeaaeallllaeallrlgrldeAa.allr 55
                 +l++ ++ eA  ++e+al+l              + + + ++a+++lg++d+A+ ++  
  MMETSP0890-20130614|41301_1  2 ALQRSEWYEASSYYEKALKLVrehglvinvAAESQLYNNVGWAAYQLGEYDKALmRYET 60
                 67888899999**********76666665555*********************988765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.42
    PF13432.1  44 lgrldeAaallraalala 61 
                  l+r +eA+a+ r+ +++a
  MMETSP0890-20130614|41301_1  92 LNRRAEAIAWMRQGASAA 109
                  566666666666554333 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.91
    PF13432.1  28 PeaaeallllaeallrlgrldeAaall 54 
                   + a a+l+l+ +l    +l+eA+++l
  MMETSP0890-20130614|41301_1 125 DLGALARLRLGYLLVLHDELQEAEQVL 151
                  557899999**9999999999998665 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 1.7
    PF13432.1   8 lraGdydeAlaaleaalala.....P 28 
                  + + +++eA+++l  +l ++     P
  MMETSP0890-20130614|41301_1 139 VLHDELQEAEQVLFPLLQAYlidfpP 164
                  44444455554443333333333343 PP

>> PF13374.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.093   1.2e+02      19      35 ..       9      25 ..       3      27 .. 0.71
   2 ?   13.6   0.2   3.3e-05     0.041       5      28 ..      38      61 ..      35      72 .. 0.81
   3 ?    3.6   0.1     0.046        58      14      33 ..      91     111 ..      87     120 .. 0.77
   4 ?   -2.0   0.1       2.8   3.5e+03       8      23 ..     134     149 ..     128     151 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.093
    PF13374.1 19 eeAlaleeealairrrl 35
                  eA  ++e+al + r++
  MMETSP0890-20130614|41301_1  9 YEASSYYEKALKLVREH 25
                 57777888888877776 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.3e-05
    PF13374.1  5 lnnLAlalrargryeeAlaleeea 28
                 +nn++ a +++g+y++Al  +e  
  MMETSP0890-20130614|41301_1 38 YNNVGWAAYQLGEYDKALMRYETG 61
                 8*****************999874 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.046
    PF13374.1  14 argryeeAlaleee.alairr 33 
                   ++r++eA a++++ a a +r
  MMETSP0890-20130614|41301_1  91 VLNRRAEAIAWMRQgASAAQR 111
                  579***********4444444 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 2.8
    PF13374.1   8 LAlalrargryeeAla 23 
                  L+ +l   ++++eA++
  MMETSP0890-20130614|41301_1 134 LGYLLVLHDELQEAEQ 149
                  6667777778888886 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.1    0.0061       7.6      13      33 ..      35      55 ..      14      56 .. 0.80
   2 ?    3.4   0.1     0.077        96      14      34 .]     129     149 ..     127     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0061
    PF13431.1 13 adaynnLAelllnnGdleeAe 33
                 +++ynn +++ + +G++++A+
  MMETSP0890-20130614|41301_1 35 SQLYNNVGWAAYQLGEYDKAL 55
                 789****************97 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.077
    PF13431.1  14 daynnLAelllnnGdleeAeq 34 
                   a+ +L++ll    +l+eAeq
  MMETSP0890-20130614|41301_1 129 LARLRLGYLLVLHDELQEAEQ 149
                  57899**************98 PP

>> PF13174.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.52   6.5e+02      15      28 ..       7      20 ..       1      21 [. 0.76
   2 ?    8.2   0.1    0.0026       3.3       6      24 ..      41      59 ..      40      60 .. 0.89
   3 ?   -1.8   0.0         4     5e+03      13      25 ..      92     104 ..      87     104 .. 0.76
   4 ?    1.9   0.1      0.27   3.4e+02       2      30 ..     130     158 ..     129     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHH CS
    PF13174.1 15 dtdeAlealerlik 28
                 ++ eA  ++e+ +k
  MMETSP0890-20130614|41301_1  7 EWYEASSYYEKALK 20
                 78899999999886 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHHHHHHHH CS
    PF13174.1  6 lalsyyklgdtdeAleale 24
                  +++ y+lg++d+Al  +e
  MMETSP0890-20130614|41301_1 41 VGWAAYQLGEYDKALMRYE 59
                 69*****99*****99887 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 4
                  HHHHHHHHHHHHH CS
    PF13174.1  13 lgdtdeAlealer 25 
                  l++ +eA++ +++
  MMETSP0890-20130614|41301_1  92 LNRRAEAIAWMRQ 104
                  5678899998875 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.27
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
    PF13174.1   2 AlyklalsyyklgdtdeAlealerlikey 30 
                  A ++l++++   ++ +eA ++l  l++ y
  MMETSP0890-20130614|41301_1 130 ARLRLGYLLVLHDELQEAEQVLFPLLQAY 158
                  7899*****9977999**99998887776 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.014        17      14      29 ..       7      22 ..       3      27 .. 0.68
   2 ?    7.4   0.2    0.0031       3.8       2      23 ..      38      59 ..      37      71 .. 0.87
   3 ?   -1.9   0.0       2.9   3.6e+03      12      23 ..      92     103 ..      83     111 .. 0.72
   4 ?   -2.2   0.0       3.7   4.6e+03       5      14 ..     137     146 ..     127     150 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.014
    PF13176.1 14 dyekAielyeraLalt 29
                 ++ +A ++ye+aL+l 
  MMETSP0890-20130614|41301_1  7 EWYEASSYYEKALKLV 22
                 5557777888877664 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0031
    PF13176.1  2 llnLarlysrlgdyekAielye 23
                 ++n +++  +lg+y+kA+  ye
  MMETSP0890-20130614|41301_1 38 YNNVGWAAYQLGEYDKALMRYE 59
                 899999*9*********87776 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 2.9
    PF13176.1  12 lgdyekAielye 23 
                  l+++ +Ai   +
  MMETSP0890-20130614|41301_1  92 LNRRAEAIAWMR 103
                  567777776544 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 3.7
    PF13176.1   5 Larlysrlgd 14 
                  L +l+ +l++
  MMETSP0890-20130614|41301_1 137 LLVLHDELQE 146
                  3344444444 PP

>> PF07721.9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.025        32       8      21 ..      42      55 ..      40      59 .. 0.92
   2 ?    3.2   0.0      0.11   1.4e+02      14      26 .]      92     104 ..      87     104 .. 0.85
   3 ?    0.6   1.5      0.76   9.4e+02       2      24 ..     129     151 ..     128     151 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.025
                 HHHHHH-------H CS
    PF07721.9  8 ArallalGdldeAr 21
                 ++a+++lG++d A+
  MMETSP0890-20130614|41301_1 42 GWAAYQLGEYDKAL 55
                 79*********997 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.11
                  -------HHHHHT CS
    PF07721.9  14 lGdldeAraller 26 
                  l + +eA a++++
  MMETSP0890-20130614|41301_1  92 LNRRAEAIAWMRQ 104
                  789********97 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.76
                  HHH---HHHHHH-------HHHH CS
    PF07721.9   2 rallaLArallalGdldeArall 24 
                   a+l L+ +l +  +l eA+++l
  MMETSP0890-20130614|41301_1 129 LARLRLGYLLVLHDELQEAEQVL 151
                  6899999999999999***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       405  (0.0296226); expected 273.4 (0.02)
Passed bias filter:                      354  (0.0258923); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                        12  (0.000877706); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.40s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 795.93
//
Query:       MMETSP0890-20130614|41307_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-26   91.9   0.7    3.9e-25   88.6   0.5    2.2  1  PF01963.12 TraB family
    0.00081   18.8   0.0     0.0029   16.9   0.0    2.0  1  PF04187.8  Protein of unknown function, DUF399
  ------ inclusion threshold ------
      0.018   15.2   0.8      0.079   13.1   0.2    2.2  2  PF01820.16 D-ala D-ala ligase N-terminus
      0.025   14.4   0.0        5.7    6.8   0.0    2.4  2  PF04023.9  FeoA domain


Domain annotation for each model (and alignments):
>> PF01963.12  TraB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.5   1.2e-28   3.9e-25       4     244 ..      52     295 ..      49     323 .. 0.80

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 1.2e-28
   PF01963.12   4 kvekggteiyLlGTaHvsdkslepvrkaiekalekadavvvEleeasakalaklpelamlpdgprlqsllspeewakldealkkrgiplqalkkgkpwllalslalaafqk.glakdlgvdpglemraaaegakvlg....Ledreiqitllral.....sleeqlkllrslldel.......................eesdelseelveawkegdl.eelmeelaedkaspelyevlldeRnrywaeklkellkgg...gkvvvVVGagHlpGekg 244
                   +++ ++e++L+GTaHvs  s+e+v ++i++   ++d +++El                  d +r++++    e +  +             k+ kp l a+ + +a  ++    +++g d g+e+  a ++a        L d ++ +tl r       +  e+++ l s+l ++                       e s ++++e ve  k+ d+ + +++ l++  + p+ly +l+deR++ +a++l ++l+++   ++vv VVG +H  G+ +
  MMETSP0890-20130614|41307_1  52 VLKRRNSEVWLIGTAHVSARSAEQVAETIDA--VSPDLIAIEL------------------DRKRISQVAASSEQTSET------------PKQQKPQLGAFAIGAALRSMySSLDKMGFDSGAEFSVALDKASSGRipvlLADQDVDTTLSRLAyavrhTKPEEIAALDSSLNSVlsknqgirllteatsnyagtksgEGSRDILREAVELIKHRDTvRNVIQALKS--DAPQLYSALVDERDATMANNLIQVLDSPvppKRVVFVVGMAHEDGIAR 295
                  567789*************************..**********..................999999888887776433............456666666666666655556445566999999999997777776688899999999999887789999555556666666644334444444444444444555555999**************************..******************************************888765 PP

>> PF04187.8  Protein of unknown function, DUF399
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.6e-07    0.0029      96     211 ..      78     297 ..      67     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 8.6e-07
    PF04187.8  96 eaarearlpllalnvprevvrkvsreGleslseaerallpskas..lpseeyrelleeifaehcea...........................................................................................................leeelerfleaQ.slwDatMAesivral...epggpvvviaGsgHvekglGvparl 211
                  e +++   +l+a++++r+ +++v++      s ++ ++ p++++  l + +  ++l+ ++++ +++                                                                                                           l+++++++++a    +DatMA++++++l    p ++vv ++G  H     G+++rl
  MMETSP0890-20130614|41307_1  78 ETIDAVSPDLIAIELDRKRISQVAA------SSEQTSETPKQQKpqLGAFAIGAALRSMYSSLDKMgfdsgaefsvaldkassgripvlladqdvdttlsrlayavrhtkpeeiaaldsslnsvlsknqgirllteatsnyagtksgegsrdilreavelikhrdtvrnviqaLKSDAPQLYSALvDERDATMANNLIQVLdspVPPKRVVFVVGMAHE---DGIARRL 297
                  5556666678999999999999997......2222222222222246777888888888888888888888889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999998886555577888888568*************976669***********7...4777776 PP

>> PF01820.16  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   2.3e-05     0.079      15      62 ..      67     114 ..      66     131 .. 0.75
   2 ?   -1.5   0.0      0.78   2.7e+03      20      44 ..     237     261 ..     235     274 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
                  HHHHHHHHHHHCCS-TTTEEEEEEEE----.-EEEE----S----HHHH CS
   PF01820.16  15 eVSlkSakavlkaLdkekyevvpigitkeg.kwllaeeaeeeleekkke 62 
                  +VS +Sa++v++++d+   +++ i+++++   ++  +++e+  e+ k++
  MMETSP0890-20130614|41307_1  67 HVSARSAEQVAETIDAVSPDLIAIELDRKRiSQVA-ASSEQTSETPKQQ 114
                  69*************************99954444.4444433333333 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.78
                  HHHHHHCCS-TTTEEEEEEEE---- CS
   PF01820.16  20 SakavlkaLdkekyevvpigitkeg 44 
                  + ++v++aL+++  +++   ++++ 
  MMETSP0890-20130614|41307_1 237 TVRNVIQALKSDAPQLYSALVDERD 261
                  6689999*99999988888777766 PP

>> PF04023.9  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0017       5.7      24      59 ..     130     165 ..      94     177 .. 0.79
   2 ?    5.1   0.0    0.0059        20       7      36 ..     277     305 ..     274     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0017
                  HHHHHHHTT-----EEEEEE....---EEEE---EE CS
    PF04023.9  24 llrrLsemGlspGqrvevvaqnpfggpllvkvddtr 59 
                  + + L++mG+  G++  v  ++   g + v + d+ 
  MMETSP0890-20130614|41307_1 130 MYSSLDKMGFDSGAEFSVALDKASSGRIPVLLADQD 165
                  55779*************986566788888876664 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0059
                  TTTSEEEEGGGSTTHCSHHHHHHHTT---- CS
    PF04023.9   7 keGesgeiarirdedpellrrLsemGlspG 36 
                  ++   + ++++ +e +++ rrL e G++ +
  MMETSP0890-20130614|41307_1 277 PPKRVVFVVGMAHE-DGIARRLYESGFRDD 305
                  56677889***987.66**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       481  (0.0351814); expected 273.4 (0.02)
Passed bias filter:                      364  (0.0266238); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.64
# Mc/sec: 1332.97
//
Query:       MMETSP0890-20130614|41336_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      328  (0.0239906); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 310.35
//
Query:       MMETSP0890-20130614|41330_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-08   33.2   0.1    7.2e-07   29.1   0.1    2.6  2  PF09333.6 ATG C terminal domain
  ------ inclusion threshold ------
       0.37    8.4   3.2       0.52    7.9   2.2    1.1  1  PF05642.6 Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> PF09333.6  ATG C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.063   4.3e+02       5      35 ..      95     126 ..      72     143 .. 0.66
   2 !   29.1   0.1     1e-10   7.2e-07      13      84 ..     184     255 ..     172     266 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.063
    PF09333.6   5 lyanqPadlreGlakAysslre.glkdtaqtl 35 
                  +y+++P+ +  Gl+ + +sl +  +  ta++l
  MMETSP0890-20130614|41330_1  95 IYEDRPEAFALGLHRGATSLVHhTVGGTAESL 126
                  46666666666665554444331344444444 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 1e-10
    PF09333.6  13 lreGlakAysslreglkdtaqtllavasevheqkglqgavgavlkaiPiavvrPligateavsktlgGvrnq 84 
                  l +Gla++++s   g+ d     ++++ ++ e+ g++ga+++v + +  +vv+P++g+++a + +l G+r  
  MMETSP0890-20130614|41330_1 184 LIDGLANGFDSAVGGVVDGVTGFVQAPIRGLEEGGAAGALQGVGRGVLGLVVKPVVGVADAATDVLRGIRRT 255
                  678******************************************************************975 PP

>> PF05642.6  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.2   7.7e-05      0.52     180     268 ..     195     285 ..     160     349 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 7.7e-05
    PF05642.6 180 avsvsgvv.gvpG.lgvpGvGvpGvggvgvlpgvg..vprvgvapgvGvgglggvpgvgvlesnssseGeedddeeeeeenksiepgvGvpGv 268
                  a  v gvv gv+G + +p  G+  +g +g+l gvg  v +  v p vGv+        g+  ++++    +d+d    +en+     +    v
  MMETSP0890-20130614|41330_1 195 A--VGGVVdGVTGfVQAPIRGLEEGGAAGALQGVGrgVLGLVVKPVVGVADAATDVLRGIRRTTAAGRAYDDNDVSTLDENRQNTTSLSQLSV 285
                  3..4455447888457888899999999***9997225677899******8887777788776666655555555555555554433332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       346  (0.0253072); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.37s 00:00:01.20 Elapsed: 00:00:00.66
# Mc/sec: 2026.01
//
Query:       MMETSP0890-20130614|41343_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       284  (0.0207724); expected 273.4 (0.02)
Passed bias filter:                      282  (0.0206261); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 433.03
//
Query:       MMETSP0890-20130614|41360_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.03   14.1   0.3      0.039   13.7   0.2    1.3  1  PF10772.4  Protein of unknown function (DUF2597)
       0.05   12.5   4.0      0.062   12.2   2.8    1.1  1  PF00296.15 Luciferase-like monooxygenase
        1.4    7.3   9.9        1.7    7.1   6.9    1.1  1  PF03176.10 MMPL family
        1.7    8.4  15.1        1.6    8.4   4.7    2.2  2  PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
        2.3    7.9  19.2        2.2    7.9   6.1    2.2  2  PF07889.7  Protein of unknown function (DUF1664)
        2.5    5.2  36.6        3.2    4.8  25.4    1.2  1  PF12128.3  Protein of unknown function (DUF3584)
        2.6    7.7   8.2        1.6    8.4   1.9    2.2  2  PF10805.3  Protein of unknown function (DUF2730)
        2.6    7.2  32.5          4    6.6  12.0    2.0  2  PF00038.16 Intermediate filament protein
        2.8    6.1  16.9        3.4    5.8  11.7    1.1  1  PF04632.7  Fusaric acid resistance protein family
        8.6    5.9  34.9       0.72    9.4   9.6    2.2  2  PF10721.4  Protein of unknown function (DUF2514)
        9.9    5.5  26.7       0.85    9.0  11.7    2.1  2  PF13942.1  YfhG lipoprotein


Domain annotation for each model (and alignments):
>> PF10772.4  Protein of unknown function (DUF2597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   3.1e-05     0.039       2      68 ..      43     112 ..      42     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.1e-05
    PF10772.4   2 dfdvtlgdelvhv.ekatlsitdnsavaktr..GvpdgyvdGdvsaegeleldtknfkklseaAksAGSy 68 
                  ++d  l ++ ++  + +++ i d+s+ a+++   + + + +  v+a+ +l+  +kn+++l+++A +A S 
  MMETSP0890-20130614|41360_1  43 EMDAKLEKQKIEHeKALQVAIADQSQIAQNNllQIQNEHQQLYVQAQKQLQDAKKNYQQLQTEADRATSQ 112
                  578889888886515679*********999855799*******************************985 PP

>> PF00296.15  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.8     5e-05     0.062     177     281 ..       8     115 ..       6     140 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5e-05
                  ----HHHHHH-SEE----..--HHHHHHHHHHHHH....HHHCCS-S----EEE----SSHHHHHHHHHHHC...S--------..--------HHHHHH-HHHHHHBT CS
   PF00296.15 177 paalelAarhadglltwg..eppaalaeliervraaaaaagrdpadvrvvaslpvivadteeeAraealalideegagreaaaa..arqeeeapelwagaalavpdelv 281
                   +++elAa+   +  +++  ++ ++++++++++ra   a  + ++++++  +l+v++ad ++ A+ ++l++ +e+ + + +a++  ++ ++ +++l+++a++a +++++
  MMETSP0890-20130614|41360_1   8 RKSRELAATKSLNNQLTAarADARDAKQKLQDLRAEMDAKLE-KQKIEHEKALQVAIADQSQIAQNNLLQIQNEHQQLYVQAQKqlQDAKKNYQQLQTEADRATSQADH 115
                  6899***********999889999999999999985555444.569**********************66663333333333331133333333333333333333333 PP

>> PF03176.10  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.9    0.0014       1.7      20     140 ..      30     154 ..       4     163 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
   PF03176.10  20 fpe.eadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgsteadesvaairaaveear....pleglkvevtGpaatladlrda 140
                   ++ +++ ++++  ++a+ +++  +  ++a   +++d+ +  ++++ ++++  ++  v+a+ + +D k  + ++++e+d ++++ad+++ ++r+ +++a     +l+   + +  ++ t+++ r +
  MMETSP0890-20130614|41360_1  30 ARDaKQKLQDLRAEMDAKLEKQKIE-HEKALQVAIADQSQIAQNNLLQIQNEHQQLYVQAQKQLQDAKKNYQQLQTEADRATSQADHTISNLRHQLQQANqqlqALQQHSAFLESQSKTTNEKRTT 154
                  2222223333333333222222222.1111112223333333444444444444555*****************************************9976666666666666666666665555 PP

>> PF06148.6  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.5     0.016        19      72     114 ..      17      58 ..      11      71 .. 0.80
   2 ?    8.4   4.7    0.0013       1.6      35     117 ..      63     142 ..      57     158 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.016
    PF06148.6  72 eelesplaaarkkvesvrsklseveeeveskikekkdleeeke 114
                  + l+ +l+aar + +++++kl++ ++e+++k++++ ++e ek+
  MMETSP0890-20130614|41360_1  17 KSLNNQLTAARADARDAKQKLQDLRAEMDAKLEKQ-KIEHEKA 58 
                  568899999*********************99765.5555554 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0013
    PF06148.6  35 LraysklLkkellelvnedyadFvslSgsLvglqeeleelesplaaarkkvesvrsklseveeeveskikekkdleeekellk 117
                  ++  s+  +++ll++ ne  + +v+  ++L++ +++ ++l+++  +a+++ + ++s+l    ++ ++++++   l++++++l+
  MMETSP0890-20130614|41360_1  63 IADQSQIAQNNLLQIQNEHQQLYVQAQKQLQDAKKNYQQLQTEADRATSQADHTISNLRHQLQQANQQLQA---LQQHSAFLE 142
                  5666777889999999999888******************9999999988888888887777777776654...444444444 PP

>> PF07889.7  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.1    0.0018       2.2      43     109 ..      14      85 ..       7      92 .. 0.82
   2 ?    4.7   3.2     0.018        22      55     114 ..      88     147 ..      81     159 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0018
    PF07889.7  43 dAvasvtkqlekvseavasakkhLsqridnlddkldeqk.....eiskeikeevteiredlsaikedvkslk 109
                   A +s+ +ql     +  +ak++L +   ++d kl++qk     +++  i+++ + ++++l +i+++ ++l 
  MMETSP0890-20130614|41360_1  14 AATKSLNNQLTAARADARDAKQKLQDLRAEMDAKLEKQKiehekALQVAIADQSQIAQNNLLQIQNEHQQLY 85 
                  5889**********************999***9998875322226777888888999999999999999875 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.018
    PF07889.7  55 vseavasakkhLsqridnlddkldeqkeiskeikeevteiredlsaikedvkslkqvveg 114
                   ++++++akk+  q   + d+   +  +++ + ++++++++++l+a+++    l++  ++
  MMETSP0890-20130614|41360_1  88 AQKQLQDAKKNYQQLQTEADRATSQADHTISNLRHQLQQANQQLQALQQHSAFLESQSKT 147
                  567777888877777777777777777777777777777777777777776666655554 PP

>> PF12128.3  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  25.4    0.0026       3.2     624     757 ..      10     147 ..       2     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0026
    PF12128.3 624 kqaeeqlkqlnaeleeakravaeakqalkqarlelq.rlkneqqslkdklekalaerkqqaeeqlqkldaelkqleekkkaaleelkddlreerlekk...akwqevegeldeqlaqlkaaieaartqakarlkelkk 757
                  ++  ++ k+ln++l++a++ + +akq+l+  r e+  +l++++ + +++l+ a+a++ q a+++l ++++e +ql  + ++ l+  k++++++++e     ++   ++++l +ql+q++++++a +++ +   ++ k+
  MMETSP0890-20130614|41360_1  10 SRELAATKSLNNQLTAARADARDAKQKLQDLRAEMDaKLEKQKIEHEKALQVAIADQSQIAQNNLLQIQNEHQQLYVQAQKQLQDAKKNYQQLQTEADratSQADHTISNLRHQLQQANQQLQALQQHSAFLESQSKT 147
                  3334556789999999999999999999999888753889999999999999999***************99999999999999999999999988751114555678888889999988888888765443334433 PP

>> PF10805.3  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2       0.1   1.3e+02      70     101 ..      19      50 ..      14      59 .. 0.65
   2 ?    8.4   1.9    0.0012       1.6      35      98 ..      79     141 ..      72     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.1
    PF10805.3  70 LkieltelrGelkelsaqiqslshqleLLLEk 101
                  L+ +lt +r + +  ++++q l   ++  LEk
  MMETSP0890-20130614|41360_1  19 LNNQLTAARADARDAKQKLQDLRAEMDAKLEK 50 
                  66666666667777777766666666555554 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0012
    PF10805.3  35 edveklvekieendkrlseletkleslPtakd..vhaLkieltelrGelkelsaqiqslshqleLL 98 
                  +++++l     + +k+l+  + ++++l t++d   ++ + ++ +lr +l++ ++q+q+l++ ++ L
  MMETSP0890-20130614|41360_1  79 NEHQQL---YVQAQKQLQDAKKNYQQLQTEADraTSQADHTISNLRHQLQQANQQLQALQQHSAFL 141
                  566666...788999**************99844578899*******************9988776 PP

>> PF00038.16  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  12.6     0.054        67     205     288 ..      17     102 ..       3     105 .. 0.50
   2 ?    6.6  12.0    0.0032         4     176     265 ..      82     164 ..      76     169 .] 0.68

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.054
   PF00038.16 205 eknsealrsakeeitelrrqiqsleieles....lk.kqkeslerqlaeleerleeelkklqekiseleeelqelkeemarqlreYqeL 288
                  ++ +++l +a+ +  + ++++q l++e+++    +k +++++l+ ++a+  +  +++l ++q++ ++l  +    +++++   ++Yq+L
  MMETSP0890-20130614|41360_1  17 KSLNNQLTAARADARDAKQKLQDLRAEMDAklekQKiEHEKALQVAIADQSQIAQNNLLQIQNEHQQLYVQA---QKQLQDAKKNYQQL 102
                  333456666777777777777777777666422122122345555555555555555555555554443333...33333335556665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0032
   PF00038.16 176 aqyeelaeknreeaeewykakleelqeeaeknsealrsakeeitelrrqiqsleieleslkkqkeslerqlaeleerleeelkklqekis 265
                  +q   +a+k+ ++a+++y+    +lq+ea++ ++   +a + i++lr+q+q+ + +l++l+++++ le q + ++e+     kk +   s
  MMETSP0890-20130614|41360_1  82 QQLYVQAQKQLQDAKKNYQ----QLQTEADRATS---QADHTISNLRHQLQQANQQLQALQQHSAFLESQSKTTNEKRTTSSKKKNTIFS 164
                  3444566666666666665....56666666554...45567889999999999999999999999999988888887777777666555 PP

>> PF04632.7  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.7    0.0028       3.4     211     322 ..       9     141 ..       3     161 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0028
    PF04632.7 211 lrarvralrallarllallallsslarllaalraaaaatppe........laalldelaa.................alaaeeleaavaaLrarlaalrpeaeadsdtaaallarlaellaeladalaalralqaai 322
                    ++ +a + l+++l+a+ a ++ + + l++lra+ +a  ++        l+ ++    a                 ++   + +++++ + +  ++l++ea++++++a+  +++l+++l+++ + l+al++++a  
  MMETSP0890-20130614|41360_1   9 KSRELAATKSLNNQLTAARADARDAKQKLQDLRAEMDAKLEKqkiehekaLQVAI----AdqsqiaqnnllqiqnehQQLYVQAQKQLQDAKKNYQQLQTEADRATSQADHTISNLRHQLQQANQQLQALQQHSAFL 141
                  4566777777777777777777777777777777777775556666433333333....244458878888776665555555566666666666777777777777777888888877777777777776665544 PP

>> PF10721.4  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   9.6   0.00058      0.72      51     121 ..       3      73 ..       1      76 [. 0.82
   2 ?    2.5   9.0     0.076        94      46     108 ..      89     151 ..      75     163 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00058
    PF10721.4  51 aaRaeeqrRqaaaeeaakdAqeeaaaaradAadAeaaadrLrqeadkl...aaaksavtsdtaaaargkaaara 121
                  ++R++ + R+ aa+   k+ +++++aaradA dA+++ + Lr+e+d+    +  ++ ++ + a+a++++ a ++
  MMETSP0890-20130614|41360_1   3 RERTNRKSRELAAT---KSLNNQLTAARADARDAKQKLQDLRAEMDAKlekQKIEHEKALQVAIADQSQIAQNN 73 
                  56666666666665...77789***********************97668888899999999999999988765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.076
    PF10721.4  46 vaaetaaRaeeqrRqaaaeeaakdAqeeaaaaradAadAeaaadrLrqeadklaaaksavtsd 108
                   ++ + a ++ q+ q++a+ a  +A+  ++  r + ++A+++ + L+q+ + l+++ ++ +++
  MMETSP0890-20130614|41360_1  89 QKQLQDAKKNYQQLQTEADRATSQADHTISNLRHQLQQANQQLQALQQHSAFLESQSKTTNEK 151
                  334455666677888888888888888888888888888888888888888884433333333 PP

>> PF13942.1  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   3.3      0.33   4.1e+02     115     149 ..      31      66 ..      19      78 .. 0.75
   2 ?    9.0  11.7   0.00068      0.85      99     177 ..      73     155 ..      63     159 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.33
    PF13942.1 115 aeerarykrlqqesdskldalr.eqqakLqaeLett 149
                   +++++ + l+ e+d+kl++ + e++++Lq  +++ 
  MMETSP0890-20130614|41360_1  31 RDAKQKLQDLRAEMDAKLEKQKiEHEKALQVAIADQ 66 
                  68899999**********998834556788776655 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00068
    PF13942.1  99 pllqlWrekqvlql....qlaeerarykrlqqesdskldalreqqakLqaeLetttrKLenLtdiERqLssRkqaqseledae 177
                   llq+  e+q+l +    ql+++++ y++lq+e+d    +  ++ ++L+++L++ +++L+ L +    L s  ++++e  +++
  MMETSP0890-20130614|41360_1  73 NLLQIQNEHQQLYVqaqkQLQDAKKNYQQLQTEADRATSQADHTISNLRHQLQQANQQLQALQQHSAFLESQSKTTNEKRTTS 155
                  699999999988763333699******************************************99999988888777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      3235  (0.236615); expected 273.4 (0.02)
Passed bias filter:                      582  (0.0425688); expected 273.4 (0.02)
Passed Vit filter:                       129  (0.00943534); expected 13.7 (0.001)
Passed Fwd filter:                        56  (0.00409596); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.25u 0.45s 00:00:01.70 Elapsed: 00:00:00.96
# Mc/sec: 421.86
//
Query:       MMETSP0890-20130614|41359_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.8   0.1    2.7e-08   33.8   0.1    3.6  3  PF01145.20 SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.041   13.5   4.1      0.044   13.4   1.0    2.4  2  PF00875.13 DNA photolyase
      0.056   12.8   3.0       0.13   11.6   0.0    2.5  3  PF13421.1  SPFH domain-Band 7 family
      0.094   12.6   0.0       0.22   11.4   0.0    1.6  1  PF10406.4  Transcription factor TFIID complex subunit 8 C-term


Domain annotation for each model (and alignments):
>> PF01145.20  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   7.9e-12   2.7e-08     114     171 ..      10      66 ..       3      77 .. 0.81
   2 ?   -6.9  10.2         4   1.4e+04     130     178 ..     156     204 ..      70     205 .. 0.70
   3 ?   -1.2   0.0      0.43   1.5e+03      90     122 ..     223     259 ..     213     261 .] 0.77

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 7.9e-12
   PF01145.20 114 lsnrselaaelknelneqlqkygievvdvritdvdpppevkqalakkqaaeaeaaeae 171
                     rse+aae+ + l ++++++g+++++v++tdv++p++++++l+k  a + +++ +e
  MMETSP0890-20130614|41359_1  10 NDLRSEFAAEMLRTLTSKASRFGVTIINVKVTDVSLPKDLQDRLEKTTAFRTKIT-EE 66 
                  3339***************************************998776666653.22 PP

  == domain 2    score: -6.9 bits;  conditional E-value: 4
   PF01145.20 130 eqlqkygievv.dvritdvdpppevkqalakkqaaeaeaaeaeiaraeae 178
                  + ++ + i++  +vr ++v+   ++++a a+k  a+  a +a+i +a+ae
  MMETSP0890-20130614|41359_1 156 DTVESMRIRCDsSVRSEQVNATNQTAAAAAEKDSANLLA-QARITEAQAE 204
                  335666677777888889999999999999999999999.9999999998 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.43
   PF01145.20  90 enllrrllesalrevlsqmtldeilsn....rselaa 122
                   ++l++ + +  r +l+  +  eils+    rsel +
  MMETSP0890-20130614|41359_1 223 LAQLDAQVAERGRKILGGQDGAEILSSlvsvRSELMQ 259
                  5688888999999999999999999986666666655 PP

>> PF00875.13  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0   1.3e-05     0.044      60     123 ..      65     128 ..       1     141 [. 0.91
   2 ?   -1.2   0.0      0.38   1.3e+03     117     117 ..     205     205 ..     159     239 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
                  HHHHH------EE---HHHHHHHHHHHCT-SEEEEE---S---------HHHHHH-.--EEEEE CS
   PF00875.13  60 esLaklgirLvvrrgdpaevlpelakelgvsavyanrdyepdererdeavkealrkagievhsf 123
                  e+ +++   L+ ++ ++++ ++e+ ++++++    +++ e++e+e+de++++a++++ +++++ 
  MMETSP0890-20130614|41359_1  65 EEQKNHEHALYQLTNSSEQQFAEIEQSFKIKNAQLSAQAERYEIEMDEKIAAAISDRTVQLEKA 128
                  56677788999999******************************************99998865 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.38
                  - CS
   PF00875.13 117 g 117
                  g
  MMETSP0890-20130614|41359_1 205 G 205
                  2 PP

>> PF13421.1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.7e-05      0.13     165     208 ..      15      58 ..       7      61 .. 0.87
   2 ?    0.7   0.3     0.081   2.8e+02     124     186 ..      64     126 ..      59     138 .. 0.81
   3 ?   -2.4   0.0      0.72   2.5e+03     120     120 ..     209     209 ..     164     240 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.7e-05
    PF13421.1 165 elseklreaikkelaeyGleleellienislpeevekaldkrss 208
                  e+++++ ++++++ +++G+++ ++++ ++slp++++  l+k ++
  MMETSP0890-20130614|41359_1  15 EFAAEMLRTLTSKASRFGVTIINVKVTDVSLPKDLQDRLEKTTA 58 
                  56677778899999***************************986 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.081
    PF13421.1 124 tdeeftteeiseqlrslivtrfsdllkeskipvldlaanseelseklreaikkelaeyGlele 186
                  t+e+ + e+   ql +   ++f+++ ++ ki   +l+a+ e+   ++ e+i++ ++   ++le
  MMETSP0890-20130614|41359_1  64 TEEQKNHEHALYQLTNSSEQQFAEIEQSFKIKNAQLSAQAERYEIEMDEKIAAAISDRTVQLE 126
                  666777777788999999999999999999999999999998888888888888876666665 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.72
    PF13421.1 120 e 120
                  e
  MMETSP0890-20130614|41359_1 209 E 209
                  2 PP

>> PF10406.4  Transcription factor TFIID complex subunit 8 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05      0.22      24      50 ..      51      77 ..      38      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.4e-05
    PF10406.4 24 devtdprriReklaeesrlaEeaLrkl 50
                 d+ ++ ++ R k++ee+++ E+aL++l
  MMETSP0890-20130614|41359_1 51 DRLEKTTAFRTKITEEQKNHEHALYQL 77
                 566678899****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1630  (0.119222); expected 273.4 (0.02)
Passed bias filter:                      503  (0.0367905); expected 273.4 (0.02)
Passed Vit filter:                        42  (0.00307197); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.40s 00:00:01.06 Elapsed: 00:00:00.64
# Mc/sec: 977.26
//
Query:       MMETSP0890-20130614|41365_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       168  (0.0122879); expected 273.4 (0.02)
Passed bias filter:                      163  (0.0119222); expected 273.4 (0.02)
Passed Vit filter:                         5  (0.000365711); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 365.35
//
Query:       MMETSP0890-20130614|41366_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       150  (0.0109713); expected 273.4 (0.02)
Passed bias filter:                      142  (0.0103862); expected 273.4 (0.02)
Passed Vit filter:                         4  (0.000292569); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.42s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 316.94
//
Query:       MMETSP0890-20130614|41395_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       280  (0.0204798); expected 273.4 (0.02)
Passed bias filter:                      204  (0.014921); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.40s 00:00:00.78 Elapsed: 00:00:00.71
# Mc/sec: 405.02
//
Query:       MMETSP0890-20130614|41407_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-19   69.4   0.7      6e-05   22.5   0.0    4.2  4  PF00571.23 CBS domain


Domain annotation for each model (and alignments):
>> PF00571.23  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.023   3.1e+02      21      55 ..       6      41 ..       2      43 .. 0.81
   2 !   18.6   0.2   6.8e-08   0.00093       8      55 ..     145     193 ..     137     195 .. 0.82
   3 !   22.1   0.0   5.9e-09   8.1e-05       8      51 ..     221     264 ..     213     269 .. 0.91
   4 !   22.5   0.0   4.4e-09     6e-05       2      54 ..     285     342 ..     284     344 .] 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.023
                 HHHHHHHHTTSEEEEEEET..TEB---EEHHHHHHHH CS
   PF00571.23 21 aleilrktgvsrlpVvDed..grlvGiitlrDllkal 55
                 a+  l ++  s++p   +    +++G+ t++D + +l
  MMETSP0890-20130614|41407_1  6 AFYALLEHEMSAAPLW-DSvrREFAGLMTITDFVDVL 41
                 5667889999999999.55689*********998776 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 6.8e-08
                  SCCEEETTSBHHHHHHHHHHHTTSEEEEEEET..TEB---EEHHHHHHHH CS
   PF00571.23   8 dvvtvppdetlsealeilrktgvsrlpVvDed..grlvGiitlrDllkal 55 
                   +v+v++d+ l  a ei+r+++ + lpVv  d  g l  +it  D+l++ 
  MMETSP0890-20130614|41407_1 145 SLVCVDADAHLYHACEIMRRRRRRFLPVVAPDecGVL-AVITHVDILRFF 193
                  68***************************86664544.888888888875 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 5.9e-09
                  SCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHH CS
   PF00571.23   8 dvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDl 51 
                  ++ tv+++++l+++l++l +++ s++pV D++g+++ + +  D+
  MMETSP0890-20130614|41407_1 221 NLATVTRTTPLRDVLQLLCDRDLSSVPVLDDRGKVLALYSHNDI 264
                  778*******************************9987777776 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 4.4e-09
                  HHHCCS.....SCCEEETTSBHHHHHHHHHHHTTSEEEEEEETTEB---EEHHHHHHH CS
   PF00571.23   2 gdlmtk.....dvvtvppdetlsealeilrktgvsrlpVvDedgrlvGiitlrDllka 54 
                  gd++       +++t+p+ +tl  +++++++ +++rl+  De++ +vGi++ rDll +
  MMETSP0890-20130614|41407_1 285 GDILAQrrqdePIHTCPMQATLHFVFQLFAEVKFQRLFFLDEHDCPVGIVSPRDLLAY 342
                  555555567779*******************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       252  (0.0184318); expected 273.4 (0.02)
Passed bias filter:                      232  (0.016969); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 1113.98
//
Query:       MMETSP0890-20130614|41427_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       503  (0.0367905); expected 273.4 (0.02)
Passed bias filter:                      259  (0.0189438); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.39s 00:00:01.05 Elapsed: 00:00:00.80
# Mc/sec: 1078.36
//
Query:       MMETSP0890-20130614|41436_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-77  259.4   0.8    2.7e-77  259.1   0.5    1.1  1  PF08543.7  Phosphomethylpyrimidine kinase
    2.6e-06   26.6   1.6    3.1e-06   26.4   0.1    1.7  2  PF00294.19 pfkB family carbohydrate kinase
     0.0022   17.0   0.7      0.018   14.0   0.0    2.1  2  PF02110.10 Hydroxyethylthiazole kinase family
  ------ inclusion threshold ------
      0.045   12.9   0.1       0.77    8.8   0.0    2.1  2  PF01256.12 Carbohydrate kinase


Domain annotation for each model (and alignments):
>> PF08543.7  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.1   0.5     8e-81   2.7e-77       1     244 [.       4     267 ..       4     269 .. 0.93

  Alignments for each domain:
  == domain 1    score: 259.1 bits;  conditional E-value: 8e-81
                  --------HHHHHHHHH---E-EEEESEEEE-------EEEE--HHHHHHHHHHHHTTS--SEEEE----SHHHHHHHHHHH....HHTT-.SEEEE---S---------HHHHHHHHHHTGGG-SEEE-BHHHHHHHHT----.SHHHHHH---HHHH.----EEEEB--.----............----..-EEE-----EE--------S-------HHHHHHHHHGGGSS----HHHHHHHHHHHHHGGG--------- CS
    PF08543.7   1 DssGGAGiqaDlktfsalgvygmsvitaltaqntkgveavhplpaelveaqleavledikvdavKiGmlasaeiievvaekl....kkykv.pvVlDPVmvaksgaelleeeavealkeeLlplatlvtPNlpEaeaLlgkkik.teedmkeaakklle.lgakavlikGg.hleg............eeavvtdvlydgeevveleaerietknthGtGCtlssaiaaelakgksleeAvkkAkeyvteaikealklgkghgp 244
                  Ds+GGAG+qaD+k+++alg+++m ++ta+t+qntkgv++v  +++++v+aq++a+l+di+ da+K+Gmla+ +iie+va++     ++ +v   V+DPVmv+  g++l++ +a++a+++ Llplat+ tPNl Ea+ Ll+++i  t e +++ a k+++    +avl+kG   +++             ++ v+d+lydg+   el ++r+et+nthGtGCtl+saiaa+la g+++ +Av++A++y+++a++++l+l  g+gp
  MMETSP0890-20130614|41436_1   4 DSGGGAGLQADIKSCEALGAFAMNAVTAITVQNTKGVSGVIGIEPSFVQAQMDAILNDIGADAIKTGMLATVDIIETVATRAqralDNGEVrVFVVDPVMVTAAGDRLVDTDALNAIRKILLPLATVTTPNLREAALLLDTEIPnTIEGLRDTAIKIKQrFRPDAVLLKGSfPVSSeelapnavriesGDTFVVDILYDGHCLLELASPRLETRNTHGTGCTLASAIAARLAIGDDITTAVQNARTYLQTALRNSLHLHLGSGP 267
                  9*****************************************************************************8754210256678889**********************************************77754899**********999*********94333378********99788889****************************************************************999998 PP

>> PF00294.19  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.3   4.3e+03     280     294 ..      25      39 ..      16      43 .. 0.67
   2 !   26.4   0.1   9.2e-10   3.1e-06     141     288 ..      76     254 ..      62     259 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.3
                  HHHHHHHHHHT---- CS
   PF00294.19 280 lanavaalvvqkaga 294
                  ++nav a++vq+++ 
  MMETSP0890-20130614|41436_1  25 AMNAVTAITVQNTKG 39 
                  357888999988766 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 9.2e-10
                  SSHHHHHHHHHHHHHHTT.....EEECCCCCT--.......HHCHHHHC.SEESEECCCHHHHHHHCCSSH.HCHHHHHHHHHHHHH-T-SEEEEB---...............---EEEE...........SS--EEE--.-SS--SB-TT---TTT--HHHHHHTT--HHHHHHHHHHHHHHH CS
   PF00294.19 141 plpeatlealieaaknngk....fdpnlrdplwsq.....aleklrell.pladilkpNeeEaealtgekd.ndveevlaalhklkakgaktvvvtlGk...............dGallve...........kdgevhvppvpkvkvvDttGAGDafvagflagllagksleealrlanavaalv 288
                  ++ e++ ++++ a  n+      +dp+++ +++++     al ++r++l pla++ +pN +Ea++l++ ++ n++e + +++ k+k+     +v  +G+               +     +           ++  ++ ++ p  +  +t G+G + +++++a l+ g ++ +a++ a ++++ +
  MMETSP0890-20130614|41436_1  76 DIIETVATRAQRALDNGEVrvfvVDPVMVTAAGDRlvdtdALNAIRKILlPLATVTTPNLREAALLLDTEIpNTIEGLRDTAIKIKQRFRPDAVLLKGSfpvsseelapnavriE-----SgdtfvvdilydGHCLLELAS-PRLETRNTHGTGCTLASAIAARLAIGDDITTAVQNARTYLQTA 254
                  4556667777777777777898999********999999************************************************9998888888995666666665444440.....16666666**65555555555.99*******************************9988777665 PP

>> PF02110.10  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.045   1.5e+02      52      95 ..      64     110 ..      20     123 .. 0.68
   2 !   14.0   0.0   5.3e-06     0.018     161     219 ..     197     254 ..     184     271 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.045
   PF02110.10  52 alviNiGtleek.aiealkaAvksanelg..kPvvlDPVgvgAtelR 95 
                  a  i +G l++  +ie++ + ++ a + g  + +v+DPV v+A   R
  MMETSP0890-20130614|41436_1  64 ADAIKTGMLATVdIIETVATRAQRALDNGevRVFVVDPVMVTAAGDR 110
                  45677777766413455554444443333115678899999998766 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.3e-06
   PF02110.10 161 vDvvsdgkkvlkiknGtellgkitasGCllgavvaaflavkkdkllaaveavllykiAg 219
                  vD++ dg+  l++ +      +  ++GC+l++++aa la+  d++++av+   +y + +
  MMETSP0890-20130614|41436_1 197 VDILYDGHCLLELASPRLETRNTHGTGCTLASAIAARLAI-GDDITTAVQNARTYLQTA 254
                  788899999999998887778889****************.666666666666665544 PP

>> PF01256.12  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00022      0.77      95     161 ..     107     174 ..      89     183 .. 0.77
   2 ?    1.8   0.0     0.033   1.1e+02     183     215 ..     218     250 ..     210     262 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
                  S-.EEEE---TTSGGGG.TTTTSSEEEE--HHHHHHHTT--HH..HCCSHHHHHHHHHHHHTTEEEEE-- CS
   PF01256.12  95 ep.lviDAdgLnllaqknserkaeviLTPhkkEfkrLlkaivk..leddrlelarelaqklnavvllkge 161
                  ++  ++D d+Ln + +       +++ TP+ +E + Ll+  +   +e  r ++ +  ++  +  vllkg+
  MMETSP0890-20130614|41436_1 107 AGdRLVDTDALNAIRK--ILLPLATVTTPNLREAALLLDTEIPntIEGLRDTAIKIKQRFRPDAVLLKGS 174
                  455689********99..589999*************997665456666666666666666778888876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.033
                  ------------HHHHCCTTSSHHHHHHHHHHH CS
   PF01256.12 183 akGGsGDvLaGligalLaqneasyeaaiaaawl 215
                   + G+G +La +i+a La+  +   a+ +a   
  MMETSP0890-20130614|41436_1 218 NTHGTGCTLASAIAARLAIGDDITTAVQNARTY 250
                  5679***************99999998887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       281  (0.020553); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.38s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1097.08
//
Query:       MMETSP0890-20130614|41429_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-07   30.4   2.1      8e-07   28.4   0.3    2.7  3  PF13414.1  TPR repeat
     0.0014   18.2   7.6       0.38   10.6   0.1    3.9  5  PF07719.12 Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.4   2.8      0.015   15.4   1.9    3.1  3  PF06005.7  Protein of unknown function (DUF904)
      0.023   14.7   0.3       0.13   12.4   0.0    2.5  2  PF13431.1  Tetratricopeptide repeat
      0.068   12.8   0.0         21    5.0   0.0    2.8  2  PF13181.1  Tetratricopeptide repeat
       0.48   11.0  10.1       0.25   11.9   4.4    2.7  2  PF13432.1  Tetratricopeptide repeat
        4.2    6.3  13.9       0.11   11.5   2.9    2.3  2  PF02841.9  Guanylate-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.57   1.1e+03       5      22 ..     276     293 ..     273     296 .. 0.85
   2 ?   -2.5   0.0       1.8   3.6e+03       2      18 ..     332     348 ..     331     356 .. 0.75
   3 !   28.4   0.3   4.1e-10     8e-07       6      67 ..     394     454 ..     390     455 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.57
    PF13414.1   5 alkelGnalfkegdydeA 22 
                   l ++G+ l++ +d+++A
  MMETSP0890-20130614|41429_1 276 RLAAAGETLLHDNDHEDA 293
                  57789***********99 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.8
    PF13414.1   2 nAealkelGnalfkegd 18 
                  +A+ l+++G +l+++g+
  MMETSP0890-20130614|41429_1 332 RADILRARGSKLWTMGR 348
                  58888999999988886 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 4.1e-10
    PF13414.1   6 lkelGnalfkegdydeAieayekAleldpnnaelyynlAlaylklgkdyeeAledyekAlel 67 
                  l +++ a   +g  ++A   +++Al++dpn+a++++++++++  l   ++ A+ d+ ++l l
  MMETSP0890-20130614|41429_1 394 LLNEALAMRARGAIKDARINLDEALDYDPNHAKALFRRGQIFVDLQ-LWDHARYDLARCLDL 454
                  6799999*************************************96.99*********9987 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.2   8.2e+03      22      28 ..     259     265 ..     251     268 .. 0.70
   2 ?   -2.5   0.0       3.1     6e+03       6      21 ..     279     294 ..     277     297 .. 0.82
   3 ?   -3.0   0.0       4.5   8.7e+03       1      20 [.     333     352 ..     333     353 .. 0.83
   4 !   10.6   0.1   0.00019      0.38       4      34 .]     394     424 ..     392     424 .. 0.94
   5 !   10.0   0.0    0.0003      0.58       1      31 [.     425     455 ..     425     458 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.2
                  HHHHHHH CS
   PF07719.12  22 eafekAl 28 
                  eafe Al
  MMETSP0890-20130614|41429_1 259 EAFEAAL 265
                  5677776 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 3.1
                  HHHHHHHHTT-HHHHH CS
   PF07719.12   6 nlGlayyklgdyeeAl 21 
                  + G+ +++ +d+e+A 
  MMETSP0890-20130614|41429_1 279 AAGETLLHDNDHEDAS 294
                  569999999***9995 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 4.5
                  HHHHHHHHHHHHHTT-HHHH CS
   PF07719.12   1 aealynlGlayyklgdyeeA 20 
                  a++l ++G  ++ +g+  +A
  MMETSP0890-20130614|41429_1 333 ADILRARGSKLWTMGRKRRA 352
                  67899999999999998887 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHTT-HHHHHHHHHHHHHH-TTS CS
   PF07719.12   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                  l n +la +++g  ++A+  +++Al +dPn+
  MMETSP0890-20130614|41429_1 394 LLNEALAMRARGAIKDARINLDEALDYDPNH 424
                  7899*************************97 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 0.0003
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
   PF07719.12   1 aealynlGlayyklgdyeeAleafekAleld 31 
                  a+al+++G++   l+ ++ A+ ++ ++l l 
  MMETSP0890-20130614|41429_1 425 AKALFRRGQIFVDLQLWDHARYDLARCLDLT 455
                  79**************************996 PP

>> PF06005.7  Protein of unknown function (DUF904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.3       3.7   7.3e+03      26      36 ..      17      27 ..       5      41 .. 0.48
   2 ?   -1.2   0.0       1.2   2.3e+03      39      53 ..     456     475 ..     451     499 .. 0.66
   3 ?   15.4   1.9   7.8e-06     0.015       7      38 ..     564     595 ..     559     609 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.7
                 HHHHHHHHHHH CS
    PF06005.7 26 eieeLkeeneq 36
                 +iee ++++e+
  MMETSP0890-20130614|41429_1 17 RIEEEEKNEEK 27
                 22222222222 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHH.....H CS
    PF06005.7  39 eeneeLeeenkklk.....e 53 
                    n+ L +e  +l+     +
  MMETSP0890-20130614|41429_1 456 GGNRDLDNELARLRrlqrrQ 475
                  56788888888888444440 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 7.8e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    PF06005.7   7 eeLeskiqqAvdtialLqmeieeLkeeneqlk 38 
                   eLe+ki++ v +i  Lq eieeL ee+e+++
  MMETSP0890-20130614|41429_1 564 TELETKIESDVVKIDDLQAEIEELDEEEEEAR 595
                  79************************944433 PP

>> PF13431.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.9   1.1e+04      20      32 ..     281     293 ..     277     293 .. 0.85
   2 ?   12.4   0.0   6.7e-05      0.13       3      32 ..     415     444 ..     413     460 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.9
    PF13431.1  20 AelllnnGdleeA 32 
                  +e+ll  +d+e+A
  MMETSP0890-20130614|41429_1 281 GETLLHDNDHEDA 293
                  7999999999998 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.7e-05
    PF13431.1   3 ekaleldPnnadaynnLAelllnnGdleeA 32 
                   +al++dPn+a a++++++++ +++ ++ A
  MMETSP0890-20130614|41429_1 415 DEALDYDPNHAKALFRRGQIFVDLQLWDHA 444
                  68*****************99877655555 PP

>> PF13181.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        21       3      34 .]     393     424 ..     391     424 .. 0.89
   2 ?    4.8   0.0     0.013        25       1      30 [.     425     454 ..     425     458 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.011
                  -TTT---HHHHTT-HHHHHHHHH---HHHH.H CS
    PF13181.1   3 ayynlGdiYrqlGdydkAkeylekalelkprn 34 
                  +++n ++++r  G ++ A   l +al+++p++
  MMETSP0890-20130614|41429_1 393 LLLNEALAMRARGAIKDARINLDEALDYDPNH 424
                  678889999999999***************85 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.013
                  ---TTT---HHHHTT-HHHHHHHHH---HH CS
    PF13181.1   1 akayynlGdiYrqlGdydkAkeylekalel 30 
                  aka++++G+i+ +l  +d A   l ++l+l
  MMETSP0890-20130614|41429_1 425 AKALFRRGQIFVDLQLWDHARYDLARCLDL 454
                  689*****************9999999987 PP

>> PF13432.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         7   1.4e+04       4      16 ..     281     293 ..     278     296 .. 0.53
   2 ?   11.9   4.4   0.00013      0.25       2      57 ..     396     452 ..     395     477 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 7
    PF13432.1   4 ArallraGdydeA 16 
                  ++ ll ++d ++A
  MMETSP0890-20130614|41429_1 281 GETLLHDNDHEDA 293
                  4445555555555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00013
    PF13432.1   2 alArallraGdydeAlaaleaalalaPeaaeallllaeallrlgrldeAa.allraa 57 
                   +A+a  ++G  ++A+  l++al+++P +a al+++++++ +l  +d A+  l r +
  MMETSP0890-20130614|41429_1 396 NEALAMRARGAIKDARINLDEALDYDPNHAKALFRRGQIFVDLQLWDHARyDLARCL 452
                  68999999999**************************************98887765 PP

>> PF02841.9  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.5      0.27   5.2e+02     231     258 ..       8      34 ..       4      53 .. 0.54
   2 ?   11.5   2.9   5.5e-05      0.11     145     246 ..     477     610 ..     461     618 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.27
    PF02841.9 231 eqrmeakeksleehvkqLkekleeerek 258
                  e+  e++ +++ee+ k+ +ekle++++ 
  MMETSP0890-20130614|41429_1   8 EEWAEEQVQRIEEEEKN-EEKLETTKKS 34 
                  33344444444444444.4444444443 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 5.5e-05
    PF02841.9 145 skpggy..klfleekdkleeeYeqeprKGvkaeevLqeflks..............................keaveeailqtdkaltakekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvk 246
                  +k+g+y  + f ++++ + ++ +  p+K  ka + L+ + k+                              +++  + +l + +a+t+ e +ie + +k + ++ae e+l e+++e ++  +++  ++++ + 
  MMETSP0890-20130614|41429_1 477 AKDGKYfkDAFADDRQAIYDDVDLDPTKMAKARQELRDWAKKqellakqkkegntptlkrehttpawdwtasYSTKDRPKLVSTTAITELETKIESDVVKIDDLQAEIEELDEEEEEARRLAKQEYYNTQIGLG 610
                  456665334699***************************99889**************************99999999**********************************9988888777777667766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       936  (0.0684611); expected 273.4 (0.02)
Passed bias filter:                      395  (0.0288912); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.01u 0.43s 00:00:01.44 Elapsed: 00:00:01.51
# Mc/sec: 983.93
//
Query:       MMETSP0890-20130614|41433_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0056   16.3   0.0      0.014   15.0   0.0    1.7  1  PF01412.13 Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> PF01412.13  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-06     0.014      58     115 ..       1      58 [.       1      60 [. 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1e-06
                  TS---HHHHHHHHH---HHHHHHHCCCTTTS---TTTCGHHHHHHHHHHHHTCHTCCH CS
   PF01412.13  58 ldkwteeqlellkelgNkkaneileaksekskkiksesdkekreefirakYeekkfae 115
                  ++ w++ +++ +k++gN ++++++ a+ ++s++ ++       ++f++a Y +k + +
  MMETSP0890-20130614|41433_1   1 MSYWSKAEVAKIKNGGNARIRTLYMANLPPSQRLSPGVALPVAKNFVKACYIDKCWYD 58 
                  567************************989999999999999999********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       526  (0.0384728); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.82
# Mc/sec: 920.55
//
Query:       MMETSP0890-20130614|41457_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   12.9   0.0       0.15   12.0   0.0    1.5  1  PF12394.3 Protein of unknown function (DUF3657)


Domain annotation for each model (and alignments):
>> PF12394.3  Protein of unknown function (DUF3657)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05      0.15       2      44 ..      21      61 ..      20      63 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
    PF12394.3  2 qieLlfydfldassesiknledlksvstrtlkiennallgihe 44
                 ++  lf+d+++ s    k+++dl  + ++tl+i+++a l+++e
  MMETSP0890-20130614|41457_1 21 ECQSLFHDMEELSA--GKDIKDLPEAVQATLLIHQEAILRNKE 61
                 56779999999999..8899*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       286  (0.0209187); expected 273.4 (0.02)
Passed bias filter:                      272  (0.0198947); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.38s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 736.02
//
Query:       MMETSP0890-20130614|41456_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.8   8.9        1.5    7.4   6.2    1.2  1  PF10351.4 Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> PF10351.4  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.2   0.00011       1.5     301     367 ..     160     235 ..     139     239 .] 0.61

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00011
    PF10351.4 301 naesedsdsqdeeeesasslsstsgskrskdss.........esrsssssssksslssqsskssdkskskrkelkk 367
                  ++ + +sd++ +ee ++++++++ +++r+++s+         ++++ ++ss+k+++  ++ ++s+k+++k+k+ kk
  MMETSP0890-20130614|41456_1 160 SLPHASSDDNYDEEADKADTAQQAKKRRRSSSNddadfdtttQNNVDDASSKKKRPRGKEVTTSSKKNHKEKKKKK 235
                  4444788999999999999999999999999965555555554444444444444444444444333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1225  (0.0895992); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        59  (0.00431539); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.40s 00:00:01.01 Elapsed: 00:00:00.64
# Mc/sec: 894.89
//
Query:       MMETSP0890-20130614|41460_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       241  (0.0176273); expected 273.4 (0.02)
Passed bias filter:                      230  (0.0168227); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.97
# Mc/sec: 195.17
//
Query:       MMETSP0890-20130614|41462_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-20   71.3   0.3    6.7e-20   71.1   0.2    1.1  1  PF04960.10 Glutaminase


Domain annotation for each model (and alignments):
>> PF04960.10  Glutaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.2   4.9e-24   6.7e-20     223     285 ..       2      64 ..       1      65 [. 0.97

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 4.9e-24
                  GG---HHHH----EE-------EEEE-T-E-EEEE-S-B-----B----HHHHHHHHHCT--T CS
   PF04960.10 223 dasGefayrvGlPaKSgvsGgilavvPgkmgiavysPaldeaGnsvaGvalleklskklelsi 285
                  + +G++ ++vG+PaKSgv+G ++ + Pg +gi+++sP+ld++Gn ++G+ ++e+ls  l+l++
  MMETSP0890-20130614|41462_1   2 NGAGKWIVDVGIPAKSGVGGYLMCICPGICGIGIFSPKLDQHGNPTRGILAAESLSAALDLHV 64 
                  679********************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       230  (0.0168227); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.39s 00:00:00.74 Elapsed: 00:00:00.84
# Mc/sec: 296.69
//
Query:       MMETSP0890-20130614|41463_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0011   18.6   0.5      0.037   13.8   0.0    3.1  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.025   3.5e+02      23      39 .]      16      32 ..      10      32 .. 0.79
   2 !   13.8   0.0   2.7e-06     0.037       3      38 ..      38      73 ..      36      74 .. 0.93
   3 ?   -1.3   0.0      0.15   2.1e+03       2      14 ..     152     163 ..     151     169 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.025
                 STEEEEEETTSEEEEEE CS
   PF00400.27 23 gpllasgSrDgtirlWd 39
                  p++a +++ g +++Wd
  MMETSP0890-20130614|41463_1 16 HPMIALAGSTGLCCIWD 32
                 4677777777******9 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.7e-06
                 EEEEEESSSSSEEEEEEESSSTEEEEEETTSEEEEE CS
   PF00400.27  3 ckatlrgHtspVtcvafspdgpllasgSrDgtirlW 38
                 c + lr H sp t++ +s dg++l+sg + g i+l+
  MMETSP0890-20130614|41463_1 38 CMHLLRKHDSPATAIECSSDGRRLISGDAQGIIHLY 73
                 788999**********************99999986 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.15
                  EEEEEEESSSSSE CS
   PF00400.27   2 eckatlrgHtspV 14 
                  e +++++gH   +
  MMETSP0890-20130614|41463_1 152 EHVSVYHGH-EII 163
                  568999***.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       475  (0.0347425); expected 273.4 (0.02)
Passed bias filter:                      373  (0.027282); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.73
# Mc/sec: 991.37
//
Query:       MMETSP0890-20130614|41469_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       177  (0.0129462); expected 273.4 (0.02)
Passed bias filter:                      174  (0.0127267); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.30s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 138.10
//
Query:       MMETSP0890-20130614|41472_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-30  104.6   0.0    4.9e-30  104.1   0.0    1.1  1  PF10294.4  Putative methyltransferase
    4.5e-10   39.3   0.0      1e-09   38.2   0.0    1.5  2  PF13489.1  Methyltransferase domain
    4.6e-10   39.9   0.0    7.4e-09   36.0   0.0    2.2  2  PF12847.2  Methyltransferase domain
    2.6e-08   33.4   0.0    2.9e-07   30.1   0.0    2.0  2  PF13847.1  Methyltransferase domain
    3.1e-06   26.5   0.0    5.7e-06   25.7   0.0    1.4  1  PF05175.9  Methyltransferase small domain
    4.5e-05   23.3   0.0    9.8e-05   22.2   0.0    1.6  1  PF13659.1  Methyltransferase domain
    0.00021   21.5   0.0    0.00053   20.3   0.0    1.7  1  PF08242.7  Methyltransferase domain
    0.00028   21.0   0.1    0.00077   19.6   0.0    1.7  2  PF13649.1  Methyltransferase domain
    0.00048   19.2   0.0    0.00085   18.4   0.0    1.4  1  PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
     0.0011   18.2   0.0     0.0018   17.5   0.0    1.3  1  PF03602.10 Conserved hypothetical protein 95
     0.0014   17.7   0.0     0.0024   16.9   0.0    1.3  1  PF03848.9  Tellurite resistance protein TehB
     0.0036   16.6   0.0     0.0051   16.2   0.0    1.3  1  PF02086.10 D12 class N6 adenine-specific DNA methyltransferase
  ------ inclusion threshold ------
      0.027   14.8   0.0      0.063   13.6   0.0    1.6  1  PF08241.7  Methyltransferase domain
      0.097   12.5   0.0       0.81    9.5   0.0    2.2  1  PF01728.14 FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PF10294.4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0     5e-33   4.9e-30       8     173 ..      76     242 ..      72     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 5e-33
    PF10294.4   8 kieedtgn..svgrvvWdaavvlskylekklake...lgsnelsglsvlELGsGtGlvGiavalllpeakviltDl.eellellkknielnknalsskvkakvLdWgeelkedvlekeevDlilaaDcvYledslelLvktLkdlleketkilvaykkr.reaekkFfkllek 173
                  ++ ++++n  + g+vvW+ + +++k +++           ++ ++++vl+LG GtGlvG+++ l   +a+v+ltD+ + l++l  +ni+ n    + ++++k ++Wge+   + l++ ++D+i a+Dc+Y+ ++l++L++tL  ++++ ++i+++yk+r  ++e  Ff +l++
  MMETSP0890-20130614|41472_1  76 SLAQSMENenGLGGVVWHCGRATCKLMSQLPELYknnGYFQHDRKQRVLDLGCGTGLVGMTAFLR--GADVTLTDYlPSLIDLTITNIQSNF-EQAASIQTKLYKWGEDA--QHLDP-PFDFIFASDCLYDYKALPDLLTTLLAVSDATSVIYLTYKRRiDDRERPFFIQLQS 242
                  55555544449**************9998543224444467788999*************99999..9*******7256***********76.8899***********99..55566.79***************************************8889999*999876 PP

>> PF13489.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.6   1.6e+03      75     111 ..      51      87 ..      16     117 .. 0.65
   2 !   38.2   0.0     1e-12     1e-09      20     125 ..     117     233 ..      92     254 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.6
    PF13489.1  75 epagkfdlivarevlehvpdpeellrqiaellkpgGy 111
                    +   d+++ar +   v    + l+ ++++ +++G+
  MMETSP0890-20130614|41472_1  51 SGSLGIDFVIARKSVTKVETGIRILSLAQSMENENGL 87 
                  3334677777777777777766666666666555555 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 1e-12
    PF13489.1  20 lkpggrvLDiGcGtGillellaengfdvtgvDpspaaigkakqaqksqfdeed............aaepagkfdlivarevlehvpdpeellrqiaellkpgGylllstpnaslasde 125
                    +++rvLD+GcGtG +      +g+dvt  D  p +i  ++++ +s+f + +            a+ ++ +fd+i a+++l+  + ++ ll+++ +      +++l++ ++  +++e
  MMETSP0890-20130614|41472_1 117 HDRKQRVLDLGCGTGLVGMTAFLRGADVTLTDYLPSLIDLTITNIQSNFEQAAsiqtklykwgedAQHLDPPFDFIFASDCLYDYKALPDLLTTLLAVSDATSVIYLTYKRRI-DDRE 233
                  45677**********87666666899**************9999999994444555555555444555666**************************9999999999998763.3332 PP

>> PF12847.2  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.36   3.6e+02      49     106 ..      31     114 ..       5     116 .. 0.54
   2 !   36.0   0.0   7.6e-12   7.4e-09       3      87 ..     121     204 ..     119     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.36
    PF12847.2  49 dleeriellqgdakeelsller...fDavllkg.l............................tldallaldeprrvlealpkllkpggr 106
                  ++e ++el   d+++e++++     +D+v++   +                            ++ a  +l      +++lp+l k++g+
  MMETSP0890-20130614|41472_1  31 KNEIKFELDVDDIFRESAEKSGslgIDFVIARKsVtkvetgirilslaqsmenenglggvvwhCGRATCKL------MSQLPELYKNNGY 114
                  34444445557773333333334668887777755555555555444444444444444444455555555......6677777777666 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 7.6e-12
    PF12847.2   3 krilDlGcGtGslslelarlrpgakvvgvDpseeslelarenaks.ldleeriellqgda.keelsllerfDavllkgltldallal 87 
                   r+lDlGcGtG+++  +    +ga+v+  D+ +  ++l   n++s   ++  i+ +   + + ++ l+++fD++++++ +l ++ al
  MMETSP0890-20130614|41472_1 121 QRVLDLGCGTGLVGMTAFL--RGADVTLTDYLPSLIDLTITNIQSnFEQAASIQTKLYKWgEDAQHLDPPFDFIFASD-CLYDYKAL 204
                  69*****************..**********************664445555555555554444666666********.88777776 PP

>> PF13847.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.22   2.1e+02      47     105 ..      28      87 ..      18     115 .. 0.63
   2 !   30.1   0.0   2.9e-10   2.9e-07       2     112 ..     118     227 ..     117     248 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.22
    PF13847.1  47 raqklgfenveFiqgdieelekl.le.esfDlvisnevlnaladpqkvlkeiervlkpggr 105
                  r+ k++++ +e  + di+  +        +D+vi++  +  + +   +l  ++++ +++g 
  MMETSP0890-20130614|41472_1  28 RRVKNEIK-FELDVDDIFRESAEkSGsLGIDFVIARKSVTKVETGIRILSLAQSMENENGL 87 
                  55556665.7777788888443322367899999997777777777777776666666664 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 2.9e-10
    PF13847.1   2 ksgikvlDlGCGtGylllelaeelgpgakvvGiDiseeaielAkeraqklgfenveFiq.......gdieeleklleesfDlvisnevlnaladpqkvlkeiervlkpggrlivesps 112
                  + +++vlDlGCGtG  +  ++     ga+v++ D+ +  i l  ++ q++  + +  iq       +d+++l+     +fD++++ + l++ +++++ l  +  v    +++++++ +
  MMETSP0890-20130614|41472_1 118 DRKQRVLDLGCGTGLVGMTAF---LRGADVTLTDYLPSLIDLTITNIQSNFEQ-AASIQtklykwgEDAQHLD----PPFDFIFASDCLYDYKALPDLLTTLLAVSDATSVIYLTYKR 227
                  5789*************9999...359******************99977655.5555513333444444444....99**********99999999999988888888888877766 PP

>> PF05175.9  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.9e-09   5.7e-06      27      92 ..     115     177 ..     105     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 5.9e-09
                  S-TT------B-------HHHHHHHH-TT----EEESBHHHHHHHHHHHHH----.--EEE-STTT CS
    PF05175.9  27 lpkklagkvlDlGcGaGvlgaalakespelevtlvDinarAvesakanleanklenvevlasdlle 92 
                  ++++ +++vlDlGcG+G++g+++  ++ +  vtl+D   + ++++ +n+++n  + +  +++ l++
  MMETSP0890-20130614|41472_1 115 FQHDRKQRVLDLGCGTGLVGMTAFLRGAD--VTLTDYLPSLIDLTITNIQSNFEQ-AASIQTKLYK 177
                  66778899*******************99..9******99999999999999766.5556666665 PP

>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     1e-07   9.8e-05       2      77 ..     121     195 ..     120     223 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1e-07
    PF13659.1   2 drvldpgcGsGtfllaalellaalllgvEldpraaalaarnlaraglaervrvrqgdlrdla.ellragsfdlvvtn 77 
                   rvld+gcG+G +  +a+ ++ a+++ ++  p  ++l+ +n++++  ++ + ++   ++  + ++  +++fd+++++
  MMETSP0890-20130614|41472_1 121 QRVLDLGCGTGLVGMTAFLRG-ADVTLTDYLPSLIDLTITNIQSN-FEQAASIQTKLYKWGEdAQHLDPPFDFIFAS 195
                  69*******************.*******************9987.5566666666654443223447999999986 PP

>> PF08242.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.4e-07   0.00053       1      85 [.     124     207 ..     124     216 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.4e-07
    PF08242.7   1 LeiGcGtGsllralleklpdieytgvDispsai....edakeklakrennnnnnvnlealdlldldgg..ssfDvvvasnvlhhlkdirev 85 
                  L++GcGtG + ++   +  ++++t +D+ ps i    ++ +  + +    +++ +++ +             fD ++as++l   k + ++
  MMETSP0890-20130614|41472_1 124 LDLGCGTGLVGMTAFLR--GADVTLTDYLPSLIdltiTNIQSNFEQAASIQTKLYKWGEDA-Q----HldPPFDFIFASDCLYDYKALPDL 207
                  8***************9..**************4433333333333333333333333222.3....25559*******998766555555 PP

>> PF13649.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.4   8.2e+03      76      95 ..      10      29 ..       3      32 .. 0.59
   2 !   19.6   0.0   7.9e-07   0.00077       1      96 [.     123     214 ..     123     217 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 8.4
    PF13649.1 76 lslehlspkqlealleeiar 95
                 +sl+  ++ ql+a ++++ r
  MMETSP0890-20130614|41472_1 10 QSLDERKKAQLKAWFASARR 29
                 45556666666666666665 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 7.9e-07
    PF13649.1   1 ildlGCGsGrviraltraldkgpeqrvigvDiseealelakerlsskgl.kvkfvqada....ralpfeegefdlvvcaglslehlspkqlealleeiarv 96 
                  +ldlGCG+G v++ +  +   g  + v++ D+ +  ++l+ ++++ +++ ++  +q  +    ++ +  + +fd+++ + +  +    k+l++ll  +++v
  MMETSP0890-20130614|41472_1 123 VLDLGCGTGLVGMTAFLR---G--ADVTLTDYLPSLIDLTITNIQ-SNFeQAASIQTKLykwgEDAQHLDPPFDFIFASDCLYD---YKALPDLLTTLLAV 214
                  79*******998877633...4..9****************9995.4555666677777444455567788*******988444...47888888777665 PP

>> PF06325.8  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.7e-07   0.00085     161     231 ..     119     194 ..     101     199 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.7e-07
    PF06325.8 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.kleval.....lkelpkekadviva 231
                  ++++vlD+G+G+G+  + a + ga+ v+ +D+ +  ++ +  N++ N  +a +++++l      +++++ ++d i+a
  MMETSP0890-20130614|41472_1 119 RKQRVLDLGCGTGLVGMTAFLRGAD-VTLTDYLPSLIDLTITNIQSNFEQAaSIQTKLykwgeDAQHLDPPFDFIFA 194
                  5679**************9998885.7779*****************555546665432121122233467777766 PP

>> PF03602.10  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0018      42     120 ..     119     194 ..     112     235 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.8e-06
   PF03602.10  42 egarvLDlfaGsGalglEAlSRgaksvvlvekdkkavavlkenlealkleeevavlredaaeallklakkkeefdlvfl 120
                  ++ rvLDl +G+G +g+ A  Rga  v+l +  +  + +  +n+++    e++a ++ +  +  + +++ +++fd++f+
  MMETSP0890-20130614|41472_1 119 RKQRVLDLGCGTGLVGMTAFLRGA-DVTLTDYLPSLIDLTITNIQSNF--EQAASIQTKLYKWGEDAQHLDPPFDFIFA 194
                  57899******************6.68999*****9999999998765..34566666666667777777999****96 PP

>> PF03848.9  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-06    0.0024      32     101 ..     121     195 ..     115     211 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.4e-06
                  --EEE-------HHHHHHH----EEEEES-HHHHHH.HHHHHHH.TT-T.EEEEE--G..GG------BSEEEEE CS
    PF03848.9  32 gkaldlGcGqGrnslflsllgydvtavdkneasiai.lqeiaek.enld.lkaalydi..naasldeeydfilst 101
                   ++ldlGcG G   +   l+g dvt  d   + i+  + +i+++ e+   ++++ly    +a +ld  +dfi+++
  MMETSP0890-20130614|41472_1 121 QRVLDLGCGTGLVGMTAFLRGADVTLTDYLPSLIDLtITNIQSNfEQAAsIQTKLYKWgeDAQHLDPPFDFIFAS 195
                  689*************************9887665314444443244445******9732457899******976 PP

>> PF02086.10  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.2e-06    0.0051      19      77 ..     112     177 ..      99     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.2e-06
                  .......--SCEEETT----TTGGG-..--SEEEEE-S-HHHHHHHHHHCCHSHHHHHHHHH.T.C CS
   PF02086.10  19 d......kgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekl.l 77 
                  +      +++++ ++ +G+g V++ a+ +g +v++ D+++ li l    i+ n+e+  +  +kl +
  MMETSP0890-20130614|41472_1 112 NgyfqhdRKQRVLDLGCGTGLVGMTAFLRGADVTLTDYLPSLIDLTITNIQSNFEQAASIQTKLyK 177
                  4555555899************************************99999888888776666543 PP

>> PF08241.7  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.4e-05     0.063       1      79 [.     124     207 ..     124     215 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.4e-05
    PF08241.7   1 LdvGcGtglllealaerpaarvtgvDlseemlatakerlkeeglelvvad.........aeelpfednsfDvvvssevlehledpeka 79 
                  Ld+GcGtgl+      r +a+vt +D+ ++ ++   ++++ +   + +a           e+ +  d  fD++++s +l   + + ++
  MMETSP0890-20130614|41472_1 124 LDLGCGTGLVGMTAFLR-GADVTLTDYLPSLIDLTITNIQSN---FEQAAsiqtklykwGEDAQHLDPPFDFIFASDCLYDYKALPDL 207
                  8*******987766666.89**********999887777777...444444444456677777777899*****99999777665555 PP

>> PF01728.14  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00083      0.81       4      84 ..      96     178 ..      94     258 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00083
   PF01728.14   4 RsayKLl....eldekfkllkvgkgktvvDlgaaPGgwsqvllqrlgeagkvvavDlqpmaplqgvttlqgditdp.stqekilea 84 
                  R+  KL+    el +  + ++  ++++v+Dlg+++G     +  r+   + v   D  p      +t +q ++ ++ s q k+ + 
  MMETSP0890-20130614|41472_1  96 RATCKLMsqlpELYKNNGYFQHDRKQRVLDLGCGTGLVGMTAFLRG---ADVTLTDYLPSLIDLTITNIQSNFEQAaSIQTKLYKW 178
                  5666654211144444467788899***********7666666666...5666666666644455555566665442333355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       500  (0.0365711); expected 273.4 (0.02)
Passed bias filter:                      480  (0.0351083); expected 273.4 (0.02)
Passed Vit filter:                        46  (0.00336454); expected 13.7 (0.001)
Passed Fwd filter:                        14  (0.00102399); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.43s 00:00:01.05 Elapsed: 00:00:00.64
# Mc/sec: 969.78
//
Query:       MMETSP0890-20130614|41489_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       244  (0.0178467); expected 273.4 (0.02)
Passed bias filter:                      200  (0.0146284); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.32s 00:00:00.60 Elapsed: 00:00:00.60
# Mc/sec: 203.69
//
Query:       MMETSP0890-20130614|41490_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.37s 00:00:00.92 Elapsed: 00:00:01.08
# Mc/sec: 632.37
//
Query:       MMETSP0890-20130614|41497_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   25.3   0.0      2e-05   24.5   0.0    1.4  1  PF02798.15 Glutathione S-transferase, N-terminal domain
    1.5e-05   25.0   0.0    2.6e-05   24.2   0.0    1.5  1  PF13417.1  Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.021   14.6   0.0    1.4  1  PF00043.20 Glutathione S-transferase, C-terminal domain
      0.045   13.6   0.0      0.076   12.9   0.0    1.5  1  PF13409.1  Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.8e-09     2e-05      19      76 .]       5      58 ..       1      58 [. 0.79

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.8e-09
                 HHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT....S-SSEEEETTTEEEESHHHHHHHHHH CS
   PF02798.15 19 laekgveyeivrvdfeagegkspewlklnpki....grvPaledgdglklteSlAIarYlar 76
                 l   ++e+e+ rv+        ++  +++       g+vP++e++ g++ +++ AI+rY+ r
  MMETSP0890-20130614|41497_1  5 LFLGKIEFEDIRVSY-------DQVKSMRAAGtlphGQVPIMEID-GTTYSQTAAILRYVGR 58
                 555678999999998.......55666665556666*********.*************975 PP

>> PF13417.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   7.5e-09   2.6e-05      14      69 ..       2      58 ..       1      67 [. 0.85

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 7.5e-09
                 HHHHHH----EEE----TTTTHHHHHHH-..TT--SSEEE----EEESHHHHHHHHHH CS
    PF13417.1 14 rlaLeekglpyelvevtpgkkrpellaln..pkgkvPvLeddgevltdSlvIieyLee 69
                 rl+L + ++++e + v +++  ++++a    p g+vP++e+dg+ ++++++I++y  +
  MMETSP0890-20130614|41497_1  2 RLTLFLGKIEFEDIRVSYDQV-KSMRAAGtlPHGQVPIMEIDGTTYSQTAAILRYVGR 58
                 889999999***999998886.455555448************************865 PP

>> PF00043.20  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.1e-06     0.021      29      60 ..     120     153 ..      77     155 .] 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.1e-06
                  HHHHHHHHHHHHHHHHH..TSSSSSSSS-BHHHH CS
   PF00043.20  29 akrkvlevlealeeels..gkkylvGdkltlADi 60 
                  +++ + + ++ le  ls  g  y++G++++++D+
  MMETSP0890-20130614|41497_1 120 NNEILPARFSKLEHALSqsGGPYFCGSSISICDL 153
                  566678889************************8 PP

>> PF13409.1  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05     0.076      10      69 ..       3      58 ..       1      59 [. 0.67

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.2e-05
                 HHHHH----EEEEEEH....TTSHHHHHHHH------SEEE.----EEESHHHHHHHHHH CS
    PF13409.1 10 ialalkgledeisvvplepkgfekseellalsprgtVPvLwdkdgtvineSseIlrylne 69
                 ++l l ++e+e   v+    +  ks   +   p g+VP++++ dgt +  +++Ilry  +
  MMETSP0890-20130614|41497_1  3 LTLFLGKIEFEDIRVSY---DQVKSMRAAGTLPHGQVPIMEI-DGTTYSQTAAILRYVGR 58
                 55666666666544422...111222344556999******8.89************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       269  (0.0196752); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.59
# Mc/sec: 629.55
//
Query:       MMETSP0890-20130614|41494_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.9   0.1      0.093   12.3   0.0    1.8  1  PF03804.8 Viral domain of unknown function
      0.035   13.6   0.0      0.073   12.6   0.0    1.5  1  PF09105.5 Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> PF03804.8  Viral domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05     0.093      10      42 ..     301     333 ..     298     349 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
    PF03804.8  10 eykenivahidHLarlRaLidgkvtsadvrRFg 42 
                   ++eniva++    +l +L d  + ++d rRF 
  MMETSP0890-20130614|41494_1 301 TFQENIVAQLADNDNLFELFDYIIHTNDKRRFY 333
                  699*****************************6 PP

>> PF09105.5  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.073      10      47 ..     174     216 ..     171     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
                  HHHC----.....-BHHHHHHHHT--HHHHHHHHHHHHH---E CS
    PF09105.5  10 iiqehreG.....ldWqeaatraslsleetrkllqsmaaaGqv 47 
                  i+q+  eG      dW ea   as+ le   k+l+ +aa   v
  MMETSP0890-20130614|41494_1 174 IVQDDSEGphvfiSDWIEAMRTASINLECVEKVLRHIAAVAVV 216
                  66666666444435************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       553  (0.0404476); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.43s 00:00:01.19 Elapsed: 00:00:00.83
# Mc/sec: 1169.31
//
Query:       MMETSP0890-20130614|41500_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.2   0.0        1.3    8.9   0.0    2.1  2  PF13487.1 HD domain


Domain annotation for each model (and alignments):
>> PF13487.1  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.025   3.5e+02      18      44 ..      21      48 ..      11      50 .. 0.79
   2 ?    8.9   0.0   9.6e-05       1.3      19      40 ..      53      73 ..      49      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.025
    PF13487.1 18 aadlLek.iprlpkdvaeiigyqhErld 44
                 a++lL +  pr+++++  ++++  +r+d
  MMETSP0890-20130614|41500_1 21 ARKLLTDpSPRMREALRYMVYGNSKRFD 48
                 56666653589**999999999999998 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 9.6e-05
    PF13487.1 19 adlLekiprlpkdvaeiigyqh 40
                  d+L++++r++ +v+ei + ++
  MMETSP0890-20130614|41500_1 53 VDMLQALERFQ-NVKEITSRHD 73
                 69*********.*****99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      339  (0.0247952); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.42s 00:00:00.82 Elapsed: 00:00:00.70
# Mc/sec: 451.88
//
Query:       MMETSP0890-20130614|41516_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       152  (0.0111176); expected 273.4 (0.02)
Passed bias filter:                      151  (0.0110445); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.37s 00:00:00.72 Elapsed: 00:00:00.54
# Mc/sec: 403.83
//
Query:       MMETSP0890-20130614|41508_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-57  195.3   0.0    1.5e-57  195.1   0.0    1.1  1  PF00155.16 Aminotransferase class I and II
    4.1e-05   22.7   0.0    6.3e-05   22.1   0.0    1.4  1  PF01212.16 Beta-eliminating lyase
  ------ inclusion threshold ------
      0.072   12.0   0.0       0.28   10.0   0.0    1.8  1  PF01041.12 DegT/DnrJ/EryC1/StrS aminotransferase family
        0.1   11.2   0.0        1.3    7.7   0.0    2.1  2  PF00202.16 Aminotransferase class-III


Domain annotation for each model (and alignments):
>> PF00155.16  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.0   4.3e-61   1.5e-57      37     363 .]      92     429 ..      59     429 .. 0.88

  Alignments for each domain:
  == domain 1    score: 195.1 bits;  conditional E-value: 4.3e-61
                  -B--------CCHHHHHHHHH-.--HHHHTT-EEEE--------HHHHHCCHHHHSS--EEEEECS--TCHHHHHHH---EEEEEE-EETTTTEE-HHHHHHHHTT--SS-E...EEE-SSS-S-------HHHHHHHHHHHHHTT-EEEEEES-------.-.....HHHHH............HHHHHH-S-....EEEEE--CCCCTBGGG----EEE.E-HHHHHHHHHCCTTTS-----CCHHHHCTSHHHHHHHHHHHHHHHHHHHHHHHHCC.CC-TCHHHH----EE-----HH.............HHHCCH---BE--...........---EE-----TTTHHHHHHHH CS
   PF00155.16  37 lneygpidglpeleealakflg.rseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvvlvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl.....davat............ranveeepn....llivgslsKafGlaGeRvGyilg.naavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae.......takelskkLleevgvyvtpgtsftv...pgrlRitvAglteeeleelveal 363
                  +  ygp+ g p+l e++akf++ +  k ++ ++ ++v+ +G  a+++al+++l ++ gde+lvp+p+ya ++++l +  + v+ +p        +dl +le+  ++      +t  +l+++phNP Gtv+++ +le++ d+++++n++l++De+Ya   f +      d+v++             +      +     ++  +lsK+fG+ G+R G++++ n+ v+++ r+l+++ +++ + q++va  l+d+++ + +l+ +++rl ++ + + ++L +l ++++++ +gmf + dls++       ++ +++ +L+ e+ +++tpg+s +    ++++Ri++A + ++ l+ ++++l
  MMETSP0890-20130614|41508_1  92 TSCYGPMAGGPQLTETVAKFMSsKILKCDVSPS-NIVCMTGVAAILNALFAAL-CDEGDEVLVPAPFYAAFIPDLGNL-AGVRCIP--------CDLSNLEKSFTKG-----RTSAILLTNPHNPLGTVLSRSQLEEISDFCQRKNIHLVSDEIYALSHFRKNssnvdDFVSLaqirrdrkqksdEC------WmnehHHVIWGLSKDFGMSGLRFGCLYSrNSTVLEATRSLANFCCVPGVCQQLVADLLNDTEFCDTFLKINAARLRASCELVEARLHALHIPFVMPTAGMFIWFDLSQLllsttfsSDIDIYNALIAEQSIVLTPGSSQHGppgTAWFRICYAYVQPDILTVALDRL 429
                  556*******************66668888888.*******************.8******************99543.3355556........6699****99985.....789****************************************98887755557777777799997755554444......255556799****************************************************************************************************999999989999999******************9999************999999986 PP

>> PF01212.16  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.9e-08   6.3e-05     107     164 ..     176     227 ..      81     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.9e-08
                  -HHHHHCCSS-..STS..ECEEEEEES-TT-------HHHHHHHHHHHHH---EEEEE CS
   PF01212.16 107 dleklealikevgaheenialisltitnntaGGqvvsleelreiaeiakeygiplhlD 164
                  dl++le+  ++  +   ++++i+lt+++n   G+v+s  +l+ei++++++++i+l+ D
  MMETSP0890-20130614|41508_1 176 DLSNLEKSFTK--G---RTSAILLTNPHNP-LGTVLSRSQLEEISDFCQRKNIHLVSD 227
                  55667887777..4...7***********7.5***********************998 PP

>> PF01041.12  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   8.2e-05      0.28      44     146 ..     126     227 ..     105     236 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.2e-05
   PF01041.12  44 vavssGtaAlllaLralgigpGdeVIvpsltfvAtanavlq.lGakpvfvDvdpetlnldpaaieaait.prtkaIlpVh...lyGqpa...dmdairaiaaehglkvieD 146
                  + + +G aA+l aL a   ++GdeV+vp+  ++A +  + + +G + +++D           ++e+  t  rt+aIl  +    +G +    ++++i +++++++++++ D
  MMETSP0890-20130614|41508_1 126 IVCMTGVAAILNALFAALCDEGDEVLVPAPFYAAFIPDLGNlAGVRCIPCDLS---------NLEKSFTkGRTSAILLTNphnPLGTVLsrsQLEEISDFCQRKNIHLVSD 227
                  667899**********9999********9988876654433134444444444.........3333333146666665541113444432336666666666666666666 PP

>> PF00202.16  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.04   1.4e+02      34      96 ..      77     142 ..      52     149 .. 0.77
   2 ?    7.7   0.0   0.00037       1.3     195     219 ..     205     229 ..     176     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.04
                  -HHHHHHHHHHHCC-S---TTTCEEHHHHHHHHHHHHHS...-----EEEEE----HHHHHHHHHH CS
   PF00202.16  34 hpkiveavkeqadklshvsfralttepalklaeklaelt...PkgldkvflansGseanetAlKla 96 
                  +p++++a+++++ + + +  + ++ +++++ ++k +++           +++++G  a+ +Al +a
  MMETSP0890-20130614|41508_1  77 KPRVQQALAKPLGDWTSCYGPMAGGPQLTETVAKFMSSKilkCDVSPSNIVCMTGVAAILNALFAA 142
                  799999999999999999999998888877766655443243334446788999999999998655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00037
                  --CCCHHHHHHHHHHCT-EEEEE-S CS
   PF00202.16 195 asegflaklreickkhnvllivDEv 219
                   s + l+++ ++c+++n++l+ DE+
  MMETSP0890-20130614|41508_1 205 LSRSQLEEISDFCQRKNIHLVSDEI 229
                  56778999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       334  (0.0244295); expected 273.4 (0.02)
Passed bias filter:                      301  (0.0220158); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.71
# Mc/sec: 1478.32
//
Query:       MMETSP0890-20130614|41517_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-28   98.4   0.0    8.8e-28   97.1   0.0    1.6  1  PF05282.6 AAR2 protein


Domain annotation for each model (and alignments):
>> PF05282.6  AAR2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   6.4e-32   8.8e-28      30     330 ..       3     283 ..       1     300 [. 0.76

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 6.4e-32
    PF05282.6  30 nfkGiknippGvHflyvseskknsesslRlGffiyvdegevlvlkwdkkk.etlvpeeeeeeeeeaykeranlkefdkkLlpYpyeelskkWkslTsyIteevlsriepvektisssttskeesslvdsksstkeekdseeel.sesekkseddeeieeekk.ekelyFtdilkrkwregatgseiteaslDkswiLeeviqrsekekkyddkeaqlLGELQfaFllflllsnyssfeqWkrLlellcnseslvtkrpeffeellkvLklqLkelpsdflfdesllsedsfllkllkeleeiev 330
                  +f+G   +p G+H+l ++       s +R+G f+ +d++ ++++ wd +  e+    +    ++ ++  ra       +L+ Yp e+ ++ W slTs+++e+ l+r+ + +  +  s  +++e++  d +   + +++ e+e+   s+kk++d+e+++e     +++++t+++      +   ++ t a++D s     ++          ++++q+L+E Q+aF+ fl l++++++ qW+rLl+llc++++l+  + +f+ +l + L+ qL+ +psdf+ d  lls +  +++ l  +++  v
  MMETSP0890-20130614|41517_1   3 KFEGLCRVPLGLHLLVFG-------SISRQGVFVRMDRDAIIIKDWDGERiENSGGDRVLSGSALEVARRAAVTPGALNLGTYP-ERHTEVWSSLTSHVSEATLERC-GLQLDVAFSC-NDDEKWEEDDEVLLSSDEK-EREIfFSSQKKHRDEEDLDEIIAlLGSPRWTPLPG----VKLSSRQDTVAHMDGSERALAMA-----RTACGGRLEQVLAEAQLAFIIFLALGSLEALKQWQRLLSLLCSCDTLLN-SGQFTDQLSNSLRSQLELAPSDFFHDP-LLSAEDTIRPALG-CFFESV 283
                  6999999***********.......999*******************87636666666634444444444444445555*****.99999****************9.5552332222.4555555555555444444.34444555555555555544443679999999944....4455678899*****99888877.....788899**************************************66665.578*********************997.9999999999988.544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       322  (0.0235518); expected 273.4 (0.02)
Passed bias filter:                      279  (0.0204067); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.43s 00:00:01.11 Elapsed: 00:00:00.60
# Mc/sec: 1541.66
//
Query:       MMETSP0890-20130614|41539_1  [L=1043]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1043 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       490  (0.0358397); expected 273.4 (0.02)
Passed bias filter:                      285  (0.0208455); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.44u 0.44s 00:00:01.88 Elapsed: 00:00:00.85
# Mc/sec: 2940.47
//
Query:       MMETSP0890-20130614|41544_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-10   41.0   0.1    5.5e-10   39.5   0.1    1.8  1  PF13640.1  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.047   13.8   0.1       0.34   11.1   0.1    2.3  1  PF03171.15 2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PF13640.1  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1     8e-14   5.5e-10       2      98 ..     156     270 ..     155     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 8e-14
    PF13640.1   2 qlnrygpggflspHvDnsesssrrltlllylndpeweeeGGelelypsdr..........................segvakevedeevv.pkpgrlvlFksdrslHrvtpvgaqgrrlaitgw 98 
                  ++n++++   + +H+D+   s++++tl   l++++    GG++el  + r                          ++++++++   e+   +pg+l++F +++slHrv+p   ++ rl+ ++ 
  MMETSP0890-20130614|41544_1 156 SVNVFRNSWQHAWHYDE---SEFTITLS--LQQAD---RGGHFELTAPLRkrnssdlafentaaiinahslynvtpRNKNSSSIPAVEHApFEPGTLQIFAGRHSLHRVSPS-WGRDRLVAVFC 270
                  6888899999*******...99999999..**999...********988459*******************999985555555554444579********************.55556665554 PP

>> PF03171.15  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     5e-05      0.34       6      92 ..     156     266 ..     153     273 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5e-05
                  EEEEEES--E-EEEEEEEESSSCEEEEEEE..T--EEEEEE-EE....................................SCECECTSTTEEEEEEEEHHCCCE---GTT-EEEE----CSEEEE CS
   PF03171.15   6 rvnrYpppekglglgpHtDnenriltillq..ddggglqfrked....................................kwidvppdpvallvnfgdvllvltngryksvlHrvlpntrgeRis 92 
                  +vn +    ++ + + H+D ++  +t++lq  d gg ++++ +                                         +p +p++l ++ g+            +lHrv p  ++ R++
  MMETSP0890-20130614|41544_1 156 SVNVFR---NSWQHAWHYDESEFTITLSLQqaDRGGHFELTAPLrkrnssdlafentaaiinahslynvtprnknsssipAVEHAPFEPGTLQIFAGR-----------HSLHRVSPSWGRDRLV 266
                  799999...99*********888888888899777777777665666555555555556666666665555544444443333344444444444444...........5556666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       293  (0.0214307); expected 273.4 (0.02)
Passed bias filter:                      269  (0.0196752); expected 273.4 (0.02)
Passed Vit filter:                         9  (0.00065828); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.40s 00:00:00.99 Elapsed: 00:00:00.71
# Mc/sec: 1073.30
//
Query:       MMETSP0890-20130614|41552_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-14   52.3   0.0    3.1e-13   49.3   0.0    2.3  2  PF03572.13 Peptidase family S41


Domain annotation for each model (and alignments):
>> PF03572.13  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.3e-17   3.1e-13     104     161 ..       2      59 ..       1      65 [. 0.95
   2 ?    0.1   0.0     0.029     4e+02     148     169 .]      96     118 ..      75     118 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2.3e-17
                  ---HHHHHHHH-----EE--------------B-----EE----EEE--TT----TT- CS
   PF03572.13 104 aseifagalkdngratlvGertfGkgsvqsvvelndgsalkltiakyltpdgrsiekk 161
                  a+e++a+ ++d++ +++vG+++fGkg+vq v +l+    lklt+ kyl p+gr+++k 
  MMETSP0890-20130614|41552_1   2 AAELVAASIQDLDLGIVVGQPSFGKGLVQDVATLPGAASLKLTVGKYLAPSGRCLQKV 59 
                  89****************************************************9975 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.029
                  EEE--TT---.-TT-----SS-- CS
   PF03572.13 148 akyltpdgrs.iekkgvePdiev 169
                  + + t  grs   + gv Pdi+v
  MMETSP0890-20130614|41552_1  96 SNFQTLAGRSvPANMGVIPDIDV 118
                  667888999988888******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       381  (0.0278672); expected 273.4 (0.02)
Passed bias filter:                      299  (0.0218695); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.39s 00:00:00.96 Elapsed: 00:00:00.80
# Mc/sec: 877.67
//
Query:       MMETSP0890-20130614|41553_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       550  (0.0402282); expected 273.4 (0.02)
Passed bias filter:                      380  (0.027794); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.41s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 156.13
//
Query:       MMETSP0890-20130614|41556_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   17.7   0.5     0.0015   17.6   0.3    1.2  1  PF05460.8 Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> PF05460.8  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   1.1e-07    0.0015      68     130 ..      69     131 ..      56     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.1e-07
    PF05460.8  68 PlppkaykkllalfrdsLsnsssatstPsrsgskpstdpktlrkqlfsTPtKsktlasalsa...s 130
                  +l+   +++     r  L+++s    tP++sg++pst+p+t++ +++s+P  +++   a++a    
  MMETSP0890-20130614|41556_1  69 GLNSSNFEQATSIARTQLAEQS---MTPKKSGRRPSTTPRTTTVGANSSPATKRKNILASTAqigK 131
                  5666666666666678888888...************************96655444443333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       626  (0.045787); expected 273.4 (0.02)
Passed bias filter:                      371  (0.0271358); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.38s 00:00:00.93 Elapsed: 00:00:00.98
# Mc/sec: 625.99
//
Query:       MMETSP0890-20130614|41569_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   14.9   0.6      0.014   14.9   0.4    2.3  2  PF12607.3  Protein of unknown function (DUF3772)
        1.4    8.3  16.3        1.3    8.4   1.0    3.0  3  PF04156.9  IncA protein
        2.5    7.9   8.4       0.67    9.7   0.9    3.3  4  PF08826.5  DMPK coiled coil domain like
        6.3    6.5   8.8       0.66    9.6   0.4    3.1  3  PF02185.11 Hr1 repeat


Domain annotation for each model (and alignments):
>> PF12607.3  Protein of unknown function (DUF3772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.4   4.1e-06     0.014      14      54 ..      62     102 ..      51     110 .. 0.74
   2 ?   -3.0   0.5       1.5   5.2e+03      16      32 ..     195     211 ..     192     212 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.1e-06
    PF12607.3  14 iaeIdklrRerfteqLlergpSPLnPafWspaaaalpddlr 54 
                   aeI ++   rf ++Ll+r ++PL+P++ s+++++++ +++
  MMETSP0890-20130614|41569_1  62 HAEIKARSICRFHAKLLLRESTPLSPKTESRLWRTAAASIT 102
                  5789999999****************865555555554443 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.5
    PF12607.3  16 eIdklrRerfteqLler 32 
                  ++ ++rR ++ ++L+++
  MMETSP0890-20130614|41569_1 195 RLNDQRRVLLDSKLARK 211
                  56678999999999875 PP

>> PF04156.9  IncA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.4   0.00095       3.2     101     144 ..      26      67 ..       3      93 .. 0.62
   2 ?    8.4   1.0   0.00037       1.3     117     178 ..     157     214 ..     144     221 .. 0.84
   3 ?    1.6   0.2     0.047   1.6e+02      86     115 ..     221     250 ..     220     256 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00095
    PF04156.9 101 eerlaeleseledleedlellqeelksleerlesleesikelak 144
                  +++l+e+es+++ l+   e+l+  + ++++rl s+e++++e+ +
  MMETSP0890-20130614|41569_1  26 DSKLKECESRILRLQASIEELE--KIKFQARLASVEKQHAEIKA 67 
                  3444555555555555555555..55555555555555544443 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00037
    PF04156.9 117 dlellqeelksleerlesleesikelakeirelreeisdlkeevqelrselerlqedlqrlq 178
                  ++e+++  ++sl  r+esl+ s+  +  ei+ l+    d+++++ ++r +l +++ ++  +q
  MMETSP0890-20130614|41569_1 157 VFENASRKERSLLNRIESLSNSFMPKLLEIQYLE----DERRRLNDQRRVLLDSKLARKVVQ 214
                  5666667788999*********************....*************99987776555 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.047
    PF04156.9  86 sesqlseleeeleqleerlaeleseledle 115
                  ++s ls+lee   ++e++ ++++s l d++
  MMETSP0890-20130614|41569_1 221 ANSKLSQLEELARTMEQYKKKTTSPLCDES 250
                  57899999999999******9999998876 PP

>> PF08826.5  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.9    0.0002      0.67      30      53 ..      25      48 ..      22      56 .. 0.89
   2 ?    0.8   0.2      0.12     4e+02      18      42 ..      44      68 ..      44      70 .. 0.63
   3 ?   -0.4   0.0      0.28   9.7e+02      36      53 ..     160     177 ..     153     180 .. 0.83
   4 ?   -0.7   0.1      0.35   1.2e+03      46      59 ..     226     239 ..     210     242 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
    PF08826.5 30 feskLkeaEkknreLeeeleqLkk 53
                  +skLke E++   L++ +e+L k
  MMETSP0890-20130614|41569_1 25 CDSKLKECESRILRLQASIEELEK 48
                 589*******************88 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.12
    PF08826.5 18 eeLekvkaanlafeskLkeaEkknr 42
                 eeLek+k     ++   + aE k r
  MMETSP0890-20130614|41569_1 44 EELEKIKFQARLASVEKQHAEIKAR 68
                 6778877666666666666666665 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.28
    PF08826.5  36 eaEkknreLeeeleqLkk 53 
                  +a  k r L++ +e+L +
  MMETSP0890-20130614|41569_1 160 NASRKERSLLNRIESLSN 177
                  677899********9975 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.35
    PF08826.5  46 eeleqLkkemEelr 59 
                  ++le+L + mE+++
  MMETSP0890-20130614|41569_1 226 SQLEELARTMEQYK 239
                  56777777777654 PP

>> PF02185.11  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   0.00019      0.66      37      62 ..      24      49 ..      17      56 .. 0.89
   2 ?   -0.4   0.1      0.26   8.9e+02      48      63 ..     185     200 ..     184     205 .. 0.85
   3 ?   -0.2   0.2      0.23   7.7e+02      48      61 ..     227     240 ..     200     245 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00019
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF02185.11 37 eaesklreseqkielLkeqLeklqkr 62
                  ++skl+e+e++i  L+ ++e+l+k 
  MMETSP0890-20130614|41569_1 24 ICDSKLKECESRILRLQASIEELEKI 49
                 69*********************986 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.26
                  XXXXXXXXXXXXXXXX CS
   PF02185.11  48 kielLkeqLeklqkrs 63 
                  +i++L+++ ++l++++
  MMETSP0890-20130614|41569_1 185 EIQYLEDERRRLNDQR 200
                  79*****999998875 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.23
                  XXXXXXXXXXXXXX CS
   PF02185.11  48 kielLkeqLeklqk 61 
                   +e+L  ++e+++k
  MMETSP0890-20130614|41569_1 227 QLEELARTMEQYKK 240
                  33444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       664  (0.0485664); expected 273.4 (0.02)
Passed bias filter:                      372  (0.0272089); expected 273.4 (0.02)
Passed Vit filter:                        33  (0.00241369); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.38s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 941.90
//
Query:       MMETSP0890-20130614|41586_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       180  (0.0131656); expected 273.4 (0.02)
Passed bias filter:                      171  (0.0125073); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.39s 00:00:00.80 Elapsed: 00:00:01.05
# Mc/sec: 399.39
//
Query:       MMETSP0890-20130614|41587_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      205  (0.0149941); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.44s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 390.52
//
Query:       MMETSP0890-20130614|41593_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       434  (0.0317437); expected 273.4 (0.02)
Passed bias filter:                      290  (0.0212112); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:01.08
# Mc/sec: 563.59
//
Query:       MMETSP0890-20130614|41590_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.45   10.4   2.0        2.2    8.2   0.5    2.1  2  PF13659.1 Methyltransferase domain


Domain annotation for each model (and alignments):
>> PF13659.1  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5   0.00016       2.2      40     115 ..      94     172 ..      73     174 .. 0.76
   2 ?    1.0   0.0     0.028   3.8e+02      57     101 ..     193     238 ..     172     253 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00016
    PF13659.1  40 a.....rnlaraglaervrvrqgdlrdlaellragsfdlvvtnpPygpragaraalrd.lydafleaaarllkpgGvlvliv 115
                        ++la a+ + +++  + d+++l+  l++++f +v +n     ++    + r+ l++++++ aa++ k++G+l + v
  MMETSP0890-20130614|41590_1  94 TeekqlTKLATAAFDCQLDYLKQDATKLE--LSDSEFAAVAANLERA-MPDRILDVRRvLLRRACAVAAPAWKNRGDLNISV 172
                  233333456678889999***********..*************987.33333455547999************99986665 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.028
    PF13659.1  57 gdlrdlaellragsfdlvvtnpPygpr.agaraalrdlydafleaa 101
                   d+ ++a+ l +++ d+ + n P +   +++r+a ++ y+aflea+
  MMETSP0890-20130614|41590_1 193 IDISAVATILATRATDAAFENLPGTAEsKKERTAGEEQYKAFLEAL 238
                  4666677778888889999999987442555556666777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       649  (0.0474693); expected 273.4 (0.02)
Passed bias filter:                      363  (0.0265506); expected 273.4 (0.02)
Passed Vit filter:                        44  (0.00321826); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.39s 00:00:01.07 Elapsed: 00:00:00.77
# Mc/sec: 1095.48
//
Query:       MMETSP0890-20130614|41592_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00023   20.6   6.8    0.00023   20.6   4.7    2.3  2  PF13920.1  Zinc finger, C3HC4 type (RING finger)
    0.00059   19.4   8.3    0.00059   19.4   5.7    2.6  3  PF13923.1  Zinc finger, C3HC4 type (RING finger)
     0.0072   15.7   3.3     0.0072   15.7   2.3    2.4  2  PF14447.1  Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.037   13.7   0.1    1.8  1  PF00271.26 Helicase conserved C-terminal domain
          2    8.0  15.7       0.24   11.0   5.3    3.1  3  PF13639.1  Ring finger domain
        3.6    7.1  13.4       0.65    9.6   5.8    2.3  2  PF00097.20 Zinc finger, C3HC4 type (RING finger)
        4.9    6.3   8.3        4.6    6.4   0.3    3.4  3  PF13248.1  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PF13920.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   4.7   1.2e-07   0.00023       3      45 ..      20      59 ..      18      64 .. 0.90
   2 ?   -0.8   0.1      0.57   1.1e+03       4      17 ..     273     286 ..     268     291 .. 0.60

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.2e-07
    PF13920.1  3 ktCvvClereadvlllpCgHlclCeeCaerllkrkkkCpiCrs 45
                 ++C  C    +  l++pCgH  +C eC+e    + k+Cp C +
  MMETSP0890-20130614|41592_1 20 TACDKCALALKYLLVTPCGHT-VCPECVEIE--QAKRCPACLK 59
                 6899*****************.*******99..79******65 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.57
    PF13920.1   4 tCvvClereadvll 17 
                  +C+ C  r++d + 
  MMETSP0890-20130614|41592_1 273 YCPTCGFRNEDSTT 286
                  46666655555555 PP

>> PF13923.1  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   5.7     3e-07   0.00059       4      44 ..      21      57 ..      18      59 .. 0.90
   2 ?   -3.3   0.5         4   7.7e+03      19      26 ..     105     112 ..     103     126 .. 0.77
   3 ?   -0.1   0.1      0.38   7.5e+02       5      21 ..     274     289 ..     268     295 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3e-07
    PF13923.1  4 sCpiCleelenpviltpCgHlyCkkCieqwlekskkkCPiC 44
                  C  C   l+  ++ tpCgH +C +C+e  +e+  k+CP C
  MMETSP0890-20130614|41592_1 21 ACDKCALALKYLLV-TPCGHTVCPECVE--IEQ-AKRCPAC 57
                 69999999*99966.*************..799.9****** PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4
    PF13923.1  19 tpCgHlyC 26 
                  ++C H+y 
  MMETSP0890-20130614|41592_1 105 LRCCHVYG 112
                  67999984 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.38
    PF13923.1   5 CpiCleelenpviltpC 21 
                  Cp C  + e+ ++ + C
  MMETSP0890-20130614|41592_1 274 CPTCGFRNEDSTT-FTC 289
                  7777777777644.333 PP

>> PF14447.1  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.3   3.7e-06    0.0072      21      48 ..      33      60 ..      15      65 .. 0.84
   2 ?    1.0   0.2      0.14   2.7e+02      42      55 .]     274     287 ..     273     287 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.7e-06
    PF14447.1 21 vllpCgHlvpdetFdlerYsgCPfCgtr 48
                  + pCgH v+ e+ ++e+   CP C + 
  MMETSP0890-20130614|41592_1 33 LVTPCGHTVCPECVEIEQAKRCPACLKL 60
                 578**********************875 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.14
    PF14447.1  42 CPfCgtrletdspf 55 
                  CP Cg r e++ +f
  MMETSP0890-20130614|41592_1 274 CPTCGFRNEDSTTF 287
                  *******9998776 PP

>> PF00271.26  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.9e-05     0.037       8      78 .]     341     411 ..     325     411 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-05
                  --EEEE-TTS-HHHHHHHHHHHHTTTSSEEEESTTC-S---STTESEEEESSSBSSHHHHHHH------TT CS
   PF00271.26   8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 
                  i++++  g+  +++    ++   +++ ++l+ ++ +  G+ lp+ ++++ ++  + ++   Q i R++R+g
  MMETSP0890-20130614|41592_1 341 IQSIKRCGQRRSRSTSLQVRTLPNDNIRILLLSKDGRHGLSLPETTHIFLVSTIWEPSVEQQVIRRAARIG 411
                  556666667777777777888889999******************************************87 PP

>> PF13639.1  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.3   0.00012      0.24      10      43 ..      29      57 ..      20      59 .. 0.78
   2 ?   -0.9   0.4      0.66   1.3e+03      18      26 ..     104     112 ..      97     124 .. 0.85
   3 ?   -0.1   0.0      0.37   7.2e+02      39      43 ..     273     277 ..     250     280 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
    PF13639.1 10 lsegeevvrlpCgHvfHeeCldewlrssnsCPlC 43
                 l   + + ++pCgH+ + eC++  +++ ++CP C
  MMETSP0890-20130614|41592_1 29 L---KYLLVTPCGHTVCPECVE--IEQAKRCPAC 57
                 4...45689***********98..678899**** PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.66
    PF13639.1  18 rlpCgHvfH 26 
                  +l+C Hv+ 
  MMETSP0890-20130614|41592_1 104 ELRCCHVYG 112
                  799***986 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.37
    PF13639.1  39 sCPlC 43 
                   CP+C
  MMETSP0890-20130614|41592_1 273 YCPTC 277
                  7***9 PP

>> PF00097.20  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.8   0.00033      0.65       1      41 []      22      57 ..      18      57 .. 0.77
   2 ?   -1.4   0.1      0.84   1.6e+03      38      41 .]     274     277 ..     269     290 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00033
                 -TTTSSS-SSEE.BSCTS-EE-CHHHHHHHCST-----TTT CS
   PF00097.20  1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41
                 C  C   +k    +++C+H++C +C++  +    ++ CP C
  MMETSP0890-20130614|41592_1 22 CDKCALALKYLL-VTPCGHTVCPECVEIEQ----AKRCPAC 57
                 555666666666.9***********98444....4679999 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.84
                  -TTT CS
   PF00097.20  38 CPlC 41 
                  CP+C
  MMETSP0890-20130614|41592_1 274 CPTC 277
                  5544 PP

>> PF13248.1  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.19   3.7e+02       4       8 ..      41      45 ..      38      46 .. 0.58
   2 ?    2.2   0.1     0.051     1e+02       3       8 ..      52      57 ..      50      62 .. 0.82
   3 ?    6.4   0.3    0.0024       4.6       3      15 ..     272     284 ..     270     291 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.19
    PF13248.1  4 tCPnC 8 
                 +CP+C
  MMETSP0890-20130614|41592_1 41 VCPEC 45
                 45555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.051
    PF13248.1  3 vtCPnC 8 
                 ++CP+C
  MMETSP0890-20130614|41592_1 52 KRCPAC 57
                 789999 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0024
    PF13248.1   3 vtCPnCGavlevd 15 
                  ++CP CG  +e++
  MMETSP0890-20130614|41592_1 272 WYCPTCGFRNEDS 284
                  69*****965876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       770  (0.0563195); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        36  (0.00263312); expected 13.7 (0.001)
Passed Fwd filter:                         9  (0.00065828); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.89u 0.39s 00:00:01.28 Elapsed: 00:00:01.12
# Mc/sec: 1131.85
//
Query:       MMETSP0890-20130614|41597_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      2075  (0.15177); expected 273.4 (0.02)
Passed bias filter:                      295  (0.0215769); expected 273.4 (0.02)
Passed Vit filter:                        56  (0.00409596); expected 13.7 (0.001)
Passed Fwd filter:                        28  (0.00204798); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.26u 0.39s 00:00:02.65 Elapsed: 00:00:01.65
# Mc/sec: 978.88
//
Query:       MMETSP0890-20130614|41606_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-09   35.7   0.1    6.5e-09   35.3   0.0    1.2  1  PF13594.1  Amidohydrolase
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.031   14.2   0.0    1.1  1  PF13147.1  Amidohydrolase
      0.067   12.7   0.0      0.089   12.3   0.0    1.2  1  PF01979.15 Amidohydrolase family


Domain annotation for each model (and alignments):
>> PF13594.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.4e-12   6.5e-09       1      45 [.      24      75 ..      24      94 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.4e-12
                 EEE----EEEB...------SSCEE...EEE----.EEE---EEEEE--S..T CS
    PF13594.1  1 iliedgkIaai..gadepldadaee...viDaegk.ivlPGfiDaHtHlr..e 45
                 il+ dg I++i  + +  l++ +e+   +i ++ + +++PGf+D+H+H +   
  MMETSP0890-20130614|41606_1 24 ILVNDGIIIEIinD-ERRLTQVKEQqitIIELGEReFLIPGFVDTHCHASqyP 75
                 9**********852.3333332222477999965449***********66542 PP

>> PF13147.1  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.8e-06     0.031       6      31 ..      59      87 ..      54      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.8e-06
    PF13147.1  6 lvlPGlvDlHvH...gpldksedgapyre 31
                 ++ PG+vD H+H   +p  +++++ p+++
  MMETSP0890-20130614|41606_1 59 FLIPGFVDTHCHasqYPYAGTGVDRPLMA 87
                 789*********88877777777766665 PP

>> PF01979.15  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05     0.089       1      17 [.      59      75 ..      59      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2e-05
                 EEE---EEEEE-TS-TT CS
   PF01979.15  1 ivlPGlIDaHvHleqsl 17
                 +++PG++D+H H+ q  
  MMETSP0890-20130614|41606_1 59 FLIPGFVDTHCHASQYP 75
                 689**********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       313  (0.0228935); expected 273.4 (0.02)
Passed bias filter:                      298  (0.0217964); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.70
# Mc/sec: 338.91
//
Query:       MMETSP0890-20130614|41608_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.015   14.7   0.0    1.2  1  PF13414.1  TPR repeat
      0.027   13.9   0.0      0.041   13.3   0.0    1.3  1  PF00515.23 Tetratricopeptide repeat
      0.047   13.5   0.0      0.073   12.9   0.0    1.3  1  PF07719.12 Tetratricopeptide repeat
      0.073   12.7   0.0       0.12   12.0   0.0    1.5  1  PF13176.1  Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PF13414.1  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.5e-06     0.015       3      30 ..      21      48 ..      19      63 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.5e-06
    PF13414.1  3 AealkelGnalfkegdydeAieayekAl 30
                 + +l++ Gn   ++g+ d+A+ ay++Al
  MMETSP0890-20130614|41608_1 21 SRVLRQIGNDRVSNGNIDDALGAYRRAL 48
                 56899**********************8 PP

>> PF00515.23  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.041       3      28 ..      23      48 ..      21      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF00515.23  3 alynlGnaylklgkydeAleyyekAL 28
                 +l ++Gn   ++g+ d+Al +y++AL
  MMETSP0890-20130614|41608_1 23 VLRQIGNDRVSNGNIDDALGAYRRAL 48
                 56678899999**************9 PP

>> PF07719.12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.073       3      28 ..      23      48 ..      21      48 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
   PF07719.12  3 alynlGlayyklgdyeeAleafekAl 28
                 +l ++G+    +g+ ++Al a+++Al
  MMETSP0890-20130614|41608_1 23 VLRQIGNDRVSNGNIDDALGAYRRAL 48
                 7889999999***************8 PP

>> PF13176.1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.6e-05      0.12       2      27 ..      24      50 ..      23      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-05
    PF13176.1  2 llnLarlysrlgdyekAielyeraL.a 27
                 l ++++  ++ g+ ++A+ +y+raL  
  MMETSP0890-20130614|41608_1 24 LRQIGNDRVSNGNIDDALGAYRRALwH 50
                 6678888899*************6644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      208  (0.0152136); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.32s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 294.63
//
Query:       MMETSP0890-20130614|41607_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-17   61.8   0.1    9.2e-16   58.3   0.0    2.2  2  PF01936.13 NYN domain
      2e-15   56.2   0.0    5.9e-15   54.7   0.0    1.8  2  PF12872.2  OST-HTH/LOTUS domain
  ------ inclusion threshold ------
      0.084   12.8   0.0      0.084   12.8   0.0    1.5  2  PF04991.8  LicD family


Domain annotation for each model (and alignments):
>> PF01936.13  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0     2e-19   9.2e-16      24     146 .]       4     116 ..       1     116 [. 0.90
   2 ?    1.1   0.0     0.085   3.9e+02      44      98 ..     146     203 ..     117     211 .. 0.70

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 2e-19
   PF01936.13  24 klleeirskgelvraraygnwedeeqnkfqdalsstgi.kvkhkplkkrggsgkkavDvelavdalelaydnkydtivLvsgDgDFaplveklrergkrVevllaeastsseLidaadefisle 146
                   l+ ei++ g+ +++rayg+    +  +++++l+++++ ++  +       ++  ++ +++++da++l++d+++d +v vs+ + +++l+ ++re ++ ++ ++ ++s+s++L +a+++f++l+
  MMETSP0890-20130614|41607_1   4 LLMLEIAQWGNAIVRRAYGE---IRSDQWRKSLAEHAFcPIPEF-------GSRSGSKTAMIIDAMDLLFDRDIDVFVFVSSSSQLSRLAMRIRESNRVIICYG-DRSASRDLVNACHRFVYLD 116
                  5788999999999*******...3358899***********999.......556788999***********************************998777777.69*************9875 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.085
   PF01936.13  44 wedeeqnkfq.dalsstgikvkhkplkkrg.gsgkkavDvelavdalelaydnky.dt 98 
                   +++++ +++ + lsst  + ++k+ + r   sg +    +l v++l+ a++++  dt
  MMETSP0890-20130614|41607_1 146 SKEQKHDQVNdQNLSSTTARTRTKDSSSRCfVSGPELRSNKLLVEMLTKAVRDNTpDT 203
                  4455667777788888888888888877668666677777788888877777666565 PP

>> PF12872.2  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.85   3.9e+03      12      36 ..     104     125 ..     103     139 .. 0.68
   2 !   54.7   0.0   1.3e-18   5.9e-15       2      71 ..     184     253 ..     183     256 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.85
                  HHHHHHTT-----BTTT---HHHHH CS
    PF12872.2  12 ellesssdddGwvslsslgslyrkk 36 
                  +l++++++    v l+ lg ++r+ 
  MMETSP0890-20130614|41607_1 104 DLVNACHR---FVYLDNLGLDLRNV 125
                  56666666...57777777777765 PP

  == domain 2    score: 54.7 bits;  conditional E-value: 1.3e-18
                  --SSHHHHHHHHHHHHTT---.--BTTT---HHHHH-TT--TTT-----HHHHHT-..TTEEEEEEE---- CS
    PF12872.2   2 slkklkellrellesssdddG.wvslsslgslyrkkypdfdprnYGyskLsdLlkalpdlfeikerrhggq 71 
                  s k l+e+l+++++++ +d   w+ ls++g ++ ++ pdfd+r++Gy kL dLl+a ++lfe+++ +++++
  MMETSP0890-20130614|41607_1 184 SNKLLVEMLTKAVRDNTPDTAdWALLSTVGHELLRIMPDFDARDFGYNKLGDLLRA-SELFEFRKSGPDNR 253
                  67899********777777666********************************77.******77766655 PP

>> PF04991.8  LicD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05     0.084      27     151 ..      63     170 ..      58     196 .. 0.73
   2 ?   -4.2   0.4       2.9   1.3e+04      23      30 ..     261     268 ..     257     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-05
    PF04991.8  27 WDdDiDiqmpredyeklaevfnqlldedlqeeetdknysekgrklldknssiterkkgngknniddvdsglyiDIfpl..dgvpdsykkkkl.kkkkknillkkklkklkeikkkkllkkleklekky 151
                  +D DiD+ ++ ++  +l++++ ++  e+              r ++  +    +r+ +n +      +  +y+D  +l   +vp + ++ ++ ++++k il+++k +k  ++++++l   + ++ +k+
  MMETSP0890-20130614|41607_1  63 FDRDIDVFVFVSSSSQLSRLAMRIR-ES-------------NRVIICYGDRSASRDLVNAC------HRFVYLDNLGLdlRNVPPEICQVEEdDNDNKQILTTSKEQKHDQVNDQNLSSTTARTRTKD 170
                  8******************888843.22.............38899999999999999877......9**********88788876444444566666666666666666666655555555554443 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 2.9
    PF04991.8  23 gfiPWDdD 30 
                  + +P+DdD
  MMETSP0890-20130614|41607_1 261 DPFPFDDD 268
                  679****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       516  (0.0377414); expected 273.4 (0.02)
Passed bias filter:                      351  (0.0256729); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.39s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 935.87
//
Query:       MMETSP0890-20130614|41624_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-13   51.7   0.1    1.8e-13   50.8   0.1    1.4  1  PF05721.8 Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PF05721.8  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.1   1.3e-17   1.8e-13     104     202 ..      39     133 ..       4     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 1.3e-17
                  --E.EEE-GGGTS-.............EE----EE-EEEESS-B-S----EEEE---------.......................-EEE----..............---- CS
    PF05721.8 104 gevqpwHqDstflp.............tdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsga 202
                  + +qp+H+D+ +++             +d +  +v+v++a+ d+t++nG++r+  GSHk  +  ++      +          +++ +  ++++++G+++l+ g+++Hg+g 
  MMETSP0890-20130614|41624_1  39 D-AQPLHRDDSMWDgstwinrmgcsedIDTPHFSVSVMWAVSDFTATNGATRVALGSHKECPRSHQ------P----------DPDLKLTTAVMSKGSVLLWLGSTYHGAGS 133
                  2.37************99988887554333789999************************777422......2..........2345788999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       192  (0.0140433); expected 273.4 (0.02)
Passed bias filter:                      183  (0.013385); expected 273.4 (0.02)
Passed Vit filter:                        10  (0.000731422); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.86
# Mc/sec: 668.75
//
Query:       MMETSP0890-20130614|41634_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-06   25.0   0.0      0.016   13.3   0.0    3.8  4  PF09763.4 Exocyst complex component Sec3


Domain annotation for each model (and alignments):
>> PF09763.4  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.015     2e+02     116     188 ..     169     243 ..      69     281 .. 0.72
   2 !    5.4   0.0   0.00027       3.7     229     349 ..     301     406 ..     297     419 .. 0.63
   3 !   13.3   0.0   1.1e-06     0.016     407     608 ..     421     615 ..     410     628 .. 0.82
   4 ?    0.1   0.0     0.011   1.5e+02     645     663 ..     667     685 ..     662     707 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.015
    PF09763.4 116 englealenaleaLfkAlnaIdsdlk.....dldsdlgkmravkerraryekvskkFlrrlveflenrFksaekqlgk 188
                  en +++  n ++ L  A n+     +     d + d ++++a+ker+    ++ ++F+  + ++  + F +++k+ ++
  MMETSP0890-20130614|41634_1 169 ENAIRDTANVAQNLRGAQNQAL---ElfrdsDYNFDGSPVAALKERMGQIHALADAFAAGIERYCLSFFGQQTKNNRS 243
                  4445555555555555555522...24556688888999999999999999999999999999988888555444443 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.00027
    PF09763.4 229 yeallqaYneslskvYereikeffeslkkslk....kssgseeseslstsslsekkteglalrksrkltvkssktlarlstsaaqkktskrlkpdeafakaLdeleplilveqnFiidFFhlssl 349
                  + +l  a+  + +++Y+ +i+  f++l +  +    ++ ++++    s++s++    ++l  rk+r+ ++ s                 +  +      ++L+el+p++l e   +++ F+++++
  MMETSP0890-20130614|41634_1 301 LRRLRAAFANATADLYAPQIRAYFDALEEDETgqifSLDNEDMGGDASNPSSP---RKNLRQRKKRQNSTASA----------------SSHDTIGFTHRFLEELSPVVLAEKRACDTLFRYKEN 406
                  56788889999999999999999999999999444433333322222333222...22222222222222222................22244567788999******************9886 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.1e-06
    PF09763.4 407 dkvlkvdplqalgilvtlerkikeleesnqsflssvlqkllekvkslfkkfvdeqiraieetkvkvkkr..kgvlpfvrnfpefvkavEsmlssaera...lavrtlvdkaYeklikavfeslkriareepaksvadeeedkeklnrhvl.lieNmnhfleeLselkn.sevleelrdeakqefdehlelYlnavlrrplgkLieFveg 608
                  + +l+    +++gil+  +    +++ +++ fl+++  ++ +  ++++++f+d+  + i +++++ k+   +g  +   +++ + +++E  l+   ++    +  ++    Y+kl  a fe+  +                + ++++++l ++eN +++++  ++     +  ++l  e+++e++++  +Y++ + + ++gkL  ++ +
  MMETSP0890-20130614|41634_1 421 AGALRLTERHSVGILAAVTLIECDHSIDDTPFLNELRSAVASIAQKQWENFLDQRAKWIRSAETSRKRDhgSGASSAAIELAGLTQKLEIALAAHTQSndtNSLYRVAGPFYKKLGDAYFEWRRKAM--------------HADTKYGILiKLENAHYLVHRFDKQDRiGGPASQLASELRTELADATRAYADWMWNYEFGKLDTYFYK 615
                  5566666778899999998888888999999****************************998888777633688999999999******99998777444333334455679999999999976655..............456777776268************998788889999**************************999976 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.011
    PF09763.4 645 rkgiealykrvekhfleds 663
                  + g++++ kr++khf ++s
  MMETSP0890-20130614|41634_1 667 DDGLGKILKRLDKHFPTGS 685
                  5799***********6555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       600  (0.0438853); expected 273.4 (0.02)
Passed bias filter:                      362  (0.0264775); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:01.29
# Mc/sec: 1476.82
//
Query:       MMETSP0890-20130614|41641_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-81  272.8   0.0    3.3e-81  272.6   0.0    1.0  1  PF03917.12 Eukaryotic glutathione synthase, ATP binding domain
    2.4e-36  123.9   0.1    5.5e-36  122.7   0.1    1.6  1  PF03199.10 Eukaryotic glutathione synthase
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.064   12.7   0.0    1.7  1  PF12965.2  Domain of unknown function (DUF3854)


Domain annotation for each model (and alignments):
>> PF03917.12  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.6   0.0   7.3e-85   3.3e-81      75     370 .]       2     414 ..       1     414 [. 0.93

  Alignments for each domain:
  == domain 1    score: 272.6 bits;  conditional E-value: 7.3e-85
                  HHHHHHHHTSTTS--------------HHHHHHHHTS-S-----B----EEEEEEE--.----E..........EEEEEEE-SS------HHHHHHHHHHHHHTTSS---S-GGGB-------HHHHHHHHHHHHHHH..............................................................................................................--HHHHHHCT-----------H.HHHHHHHHCS--EEE-SSS..-------HHHHHSGGGEEEEE--------EEGGGHHHHH----H.HHHCCEEEEE---B--BS--EEETTEEE---BEEEB-----EEE-SS-E.EEE------EEEE---------------EE-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................................................................xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   PF03917.12  75 vdrisqdaefleeslsrtkkadeFtsrlldihkkvlkenkkqevrLgifRsDYmvdkk.eetes..........lkqiElNtisvSfgglskrvselHrsvlkalkkskslesekilvndavsqlaealakaweeykn..............................................................................................................gtKKiqqeLaepgvLerfledk.eevaklrktFaglysLddt..eegkeivkkAlekPekfVlKpqrEGGgnniygedirelLkklkeseeraayiLmekiepelsenillrdeklekeevisElGiygtvlrnkdev.ivneqsGyllRtKvkssneGGVaaGfavldsiyl 370
                  +dr+s + ++l+ +l++t+  d+Ft+rll+++ +     + q + Lg+ RsDYm+d+   +  +           +q+E+Nti++Sf+ ls++vs+lH +++++ +    +e+ek++ n a +++a a+a a ++y                                                                                                                gtKK+qq La pg Le+fl      v+++r+ Fagl+ Ld++  ++++++v++A+++P++fVlKpqrEGGgnn+y ++++++L+ +    +r+ayiLme+i++++ +  l+rd  l+   +i+ElGiygt+l++  ++ ++n   G+llR K    neGGVaaGfavl+s+ l
  MMETSP0890-20130614|41641_1   2 IDRVSRNSDWLHATLKETVVSDDFTRRLLHLYDNFP---NPQSLALGLLRSDYMLDEPsVGE-NeildypdstrSLQVEINTIASSFACLSETVSNLHIYLNEKVSA---IEEEKLPLNPAGQGMAAAIAAAHNAYCTqqntsnpktvvmivqpgernqmdqrklehwlwsnhnvrlirlslaqiaqqaqiqedqgclilknhlevsvvyyragyspndyptetewsarqlietslaikcpsaayhlvGTKKVQQALAAPGQLEHFLLPTdPPVTQVRQLFAGLFDLDQAagHNADKAVNDAIASPHAFVLKPQREGGGNNLYDQQLVDALQSMIP-AQRSAYILMERINSKPRTGALVRDAILRAGPCIAELGIYGTILTDGPNLeLYNTVPGHLLRQKLLGVNEGGVAAGFAVLSSPKL 414
                  79******************************9875...5799*************753222.2356777777789*************************998877...999***********************55566788999999999999**************************************************************************************************************8666378***************972256779*************************************99.99******************************************976662677778************************9875 PP

>> PF03199.10  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.1   1.2e-39   5.5e-36       3     105 .]     140     242 ..     138     242 .. 0.97

  Alignments for each domain:
  == domain 1    score: 122.7 bits;  conditional E-value: 1.2e-39
                  -EEEEEE-TT-TTHHHHHHHHHHHHHTT--EEEEEEHHHHHHHEEEE-ST-EEEE---EEEEEEEEES-SSGGG-SSHHHHHHHHHHHHSSSEEET-HHHHHT CS
   PF03199.10   3 avvlfvvqenernvfDqrlleleLlekhgikvvRrtlaeleeelkleeeskllvkdekqevavvYfRagYepkdypseeeweaRlllEkskaikcpsiltqLa 105
                  ++v+++vq++ern +Dqr le+ L+++h+++ +R++la++ ++ +++e++  l+ +++ ev+vvY+RagY+p+dyp+e+ew+aR l+E+s aikcps +++L+
  MMETSP0890-20130614|41641_1 140 KTVVMIVQPGERNQMDQRKLEHWLWSNHNVRLIRLSLAQIAQQAQIQEDQGCLILKNHLEVSVVYYRAGYSPNDYPTETEWSARQLIETSLAIKCPSAAYHLV 242
                  789**********************************************98888888********************************************96 PP

>> PF12965.2  Domain of unknown function (DUF3854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.064      48     102 ..     311     367 ..     289     375 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
    PF12965.2  48 eq.keklkkeLipelaalatpgreiviafDq.dtkpktiknVnraikrlgklleeag 102
                     ++  +++L++ l++++ ++r+ +i+  + ++kp+t + V+ ai r g ++ e g
  MMETSP0890-20130614|41641_1 311 GGgNNLYDQQLVDALQSMIPAQRSAYILMERiNSKPRTGALVRDAILRAGPCIAELG 367
                  333555666********************9989*****************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      401  (0.02933); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.43s 00:00:01.13 Elapsed: 00:00:01.34
# Mc/sec: 742.16
//
Query:       MMETSP0890-20130614|41645_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       493  (0.0360591); expected 273.4 (0.02)
Passed bias filter:                      247  (0.0180661); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.47s 00:00:01.04 Elapsed: 00:00:00.99
# Mc/sec: 929.50
//
Query:       MMETSP0890-20130614|41655_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       331  (0.0242101); expected 273.4 (0.02)
Passed bias filter:                      315  (0.0230398); expected 273.4 (0.02)
Passed Vit filter:                        18  (0.00131656); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.40s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 273.87
//
Query:       MMETSP0890-20130614|41661_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-12   46.5  25.6    1.5e-08   34.5   7.0    3.3  3  PF00892.15 EamA-like transporter family
     0.0012   18.8  28.7      0.014   15.4   0.8    4.0  4  PF13536.1  Multidrug resistance efflux transporter


Domain annotation for each model (and alignments):
>> PF00892.15  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.9   2.9e-07     0.002      19     124 ..      37     141 ..       7     143 .. 0.82
   2 ?    0.6   2.3     0.073     5e+02      33     100 ..     173     240 ..     156     242 .. 0.68
   3 !   34.5   7.0   2.2e-12   1.5e-08      22     122 ..     203     306 ..     200     307 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
   PF00892.15  19 pltitayrlliagi.llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvlll 124
                  ++++ a  +++a+  l+++  +l  ++ ++ +++   a + lgl   +lg++++  +l+ tsa  a++++ l+ +++  + ++    +lt+++   ++++++Gv+++
  MMETSP0890-20130614|41661_1  37 SVSFSAAYYFVATTaLAFVSTILIPSS-QEVDQGVDRAGIELGLY-LFLGNCAQVLGLQTTSADAAAFLVQLTTIVVPAIEAFSKPGTLTPRTRNCCLIAFIGVAVI 141
                  455555666666655777777777776.8**************99.7*********************************************************987 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.073
   PF00892.15  33 llilllfllrepialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvl 100
                  l  +++ ++  + a+ + k+ +++ ++++  ++++++    +++++++++ s+ t+++  ++ill+v+
  MMETSP0890-20130614|41661_1 173 LSSIAVDFRPVDLAFSKAKAEASFSIISVAVFAFPFFYSSPSFSYLPVVENSMKTLFSQDISILLAVV 240
                  44444444445566666777777777777776788888888899999999999999988888888875 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 2.2e-12
   PF00892.15  22 itayrlliagillilllfllrep...ialislkdilallllgllgtvlgyllffyalkktsasnaslitslePvftillsvlllgekltlkqllgivlillGvl 122
                  + a+ ++ ++ ++  l++ + +    +++     ++ +  +gl++ + +++++ y+++ +sa+ a li + +P+f++++++lll+e++t+ +llg +lil +v+
  MMETSP0890-20130614|41661_1 203 VFAFPFFYSSPSFSYLPVVENSMktlFSQDISILLAVVTWCGLFTCGYTIFAQSYGQRGISAASANLIYTSQPIFSAFFAALLLNEQPTPATLLGGLLILSAVV 306
                  55666666666333333333333354222222335567789999999999**************************************************9986 PP

>> PF13536.1  Multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.9     0.028   1.9e+02      48      77 ..      30      60 ..      15      65 .. 0.76
   2 !   15.4   0.8     2e-06     0.014      47     106 ..      83     143 ..      73     150 .. 0.86
   3 ?    1.2   0.7     0.055   3.7e+02      25      51 ..     186     212 ..     152     221 .. 0.61
   4 !   12.3   6.5     2e-05      0.13       4     102 ..     197     306 ..     194     308 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.028
    PF13536.1 48 fyalltlAakhapg.lvaaitaltpllaall 77
                 + a+ +++++++ +  ++a+tal+ + ++l+
  MMETSP0890-20130614|41661_1 30 TIAPNLFSVSFSAAyYFVATTALAFVSTILI 60
                 4567778888887668888888777777665 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 2e-06
    PF13536.1  47 lfyalltlAakhapg.lvaaitaltpllaallslllfkeklpkrellaslliliGvvlmqv 106
                  l  ++++l+++ +++   a +++lt+++++ +  +    +l+ r+  ++l+++iGv+++  
  MMETSP0890-20130614|41661_1  83 LGNCAQVLGLQTTSAdAAAFLVQLTTIVVPAIEAFSKPGTLTPRTRNCCLIAFIGVAVICG 143
                  567889999999999566688999*********************************9865 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.055
    PF13536.1  25 llrelkrnpllwlllagllgfglfyal 51 
                   ++  k +  + ++ ++++ f++fy  
  MMETSP0890-20130614|41661_1 186 AFSKAKAEASFSIISVAVFAFPFFYSS 212
                  355566666667777788888888764 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 2e-05
    PF13536.1   4 rylfmllflllivllrkrlk......ellrelkrnpllwlllagllgfglfyallt.lAakhap.glvaaital....tpllaallslllfkeklpkrellaslliliGvv 102
                   ++  ++f++  ++++ ++       + +++l ++ +  ll+  + ++glf++++t +A +++  g+ aa ++l     p++ a+++ ll++e+ +  +ll  llil +vv
  MMETSP0890-20130614|41661_1 197 SIISVAVFAFPFFYSSPSFSylpvveNSMKTLFSQDISILLA-VVTWCGLFTCGYTiFAQSYGQrGISAASANLiytsQPIFSAFFAALLLNEQPTPATLLGGLLILSAVV 306
                  555555666666666666555544446677777777777666.66677788888872566666545555544433335******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       474  (0.0346694); expected 273.4 (0.02)
Passed bias filter:                      231  (0.0168958); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.97
# Mc/sec: 800.43
//
Query:       MMETSP0890-20130614|41663_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       548  (0.0400819); expected 273.4 (0.02)
Passed bias filter:                      397  (0.0290374); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.83
# Mc/sec: 1547.53
//
Query:       MMETSP0890-20130614|41671_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-08   31.8   2.8    0.00036   20.0   0.0    4.5  5  PF13405.1  EF-hand domain
    1.3e-07   30.3   0.0    0.00027   19.9   0.0    3.6  3  PF00036.27 EF hand
    3.7e-07   30.0   2.1    0.00022   21.1   0.6    3.3  3  PF13499.1  EF-hand domain pair
    0.00049   19.5   3.5        2.1    7.9   0.0    4.2  4  PF13833.1  EF-hand domain pair


Domain annotation for each model (and alignments):
>> PF13405.1  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   0.00036       3      27 ..      20      44 ..      18      50 .. 0.92
   2 ?   -2.0   0.0       1.3   4.4e+03      13      23 ..      62      72 ..      60      73 .. 0.80
   3 ?    1.1   0.4      0.13   4.3e+02       2      23 ..      77      97 ..      76     107 .. 0.81
   4 !    6.4   0.0    0.0024       8.3       2      22 ..     114     134 ..     113     144 .. 0.83
   5 ?   -1.2   0.0      0.67   2.3e+03      13      26 ..     184     197 ..     170     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
                 H---GCC-------B---HHHHHHH CS
    PF13405.1  3 reaFklfDkdgdGkidaeELrdaLr 27
                  e+F   D+ +dGk++++++r+aLr
  MMETSP0890-20130614|41671_1 20 LECFARADTEKDGKLTLDQFRAALR 44
                 589*********************9 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.3
                 ----B---HHH CS
    PF13405.1 13 gdGkidaeELr 23
                  d++id  +L+
  MMETSP0890-20130614|41671_1 62 PDNCIDTRQLL 72
                 5999*999986 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.13
                 HH---GCC-------B---HHH CS
    PF13405.1  2 lreaFklfDkdgdGkidaeELr 23
                 ++++F l+ +d ++ id+  ++
  MMETSP0890-20130614|41671_1 77 IHALFSLLSRD-TNSIDFFSFL 97
                 67899999999.9999987775 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0024
                  HH---GCC-------B---HH CS
    PF13405.1   2 lreaFklfDkdgdGkidaeEL 22 
                  lr +F+l+D+ g G ++++ +
  MMETSP0890-20130614|41671_1 114 LRIVFELLDTSGEGVVSQSRV 134
                  6789***********998765 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 0.67
                  ----B---HHHHHH CS
    PF13405.1  13 gdGkidaeELrdaL 26 
                  +d +++ eE++++ 
  MMETSP0890-20130614|41671_1 184 QDTFLNCEEFVSFV 197
                  56688999998876 PP

>> PF00036.27  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.8e-08   0.00027       4      27 ..      21      44 ..      18      46 .. 0.91
   2 ?    3.6   0.0     0.013        43       2      18 ..     114     130 ..     113     136 .. 0.89
   3 ?    2.6   0.0     0.026        90      14      27 ..     185     198 ..     174     200 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.8e-08
                 HHHHHHCTTTSSEBEHHHHHHHHH CS
   PF00036.27  4 eaFkefDkDgdGkIsfeEfkealk 27
                 e F+ +D+ +dGk++++ f++al+
  MMETSP0890-20130614|41671_1 21 ECFARADTEKDGKLTLDQFRAALR 44
                 89********************98 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.013
                  HHHHHHHHCTTTSSEBE CS
   PF00036.27   2 lkeaFkefDkDgdGkIs 18 
                  l+ +F+++D+ g G +s
  MMETSP0890-20130614|41671_1 114 LRIVFELLDTSGEGVVS 130
                  6779**********998 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.026
                  SSEBEHHHHHHHHH CS
   PF00036.27  14 dGkIsfeEfkealk 27 
                  d +++ eEf+++++
  MMETSP0890-20130614|41671_1 185 DTFLNCEEFVSFVN 198
                  7799******9876 PP

>> PF13499.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.1e-06     0.018      39      65 ..      16      42 ..       3      43 .. 0.78
   2 !   21.1   0.6   6.6e-08   0.00022       3      59 ..      20     131 ..      12     137 .. 0.93
   3 ?    2.3   0.0     0.051   1.7e+02      11      29 ..     182     200 ..     165     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.1e-06
    PF13499.1 39 revldyifkelDkngdGvlsfeEflqa 65
                  + + ++f+++D+ +dG+l+++ f++a
  MMETSP0890-20130614|41671_1 16 AKRALECFARADTEKDGKLTLDQFRAA 42
                 555667899999999999999999876 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 6.6e-08
    PF13499.1   3 keaFkllDkdgdgyldkeeLlrllkhlgsels.......................................................deevrevldyifkelDkngdGvlsf 59 
                   e+F + D+ +dg+l+ + ++++l++   +                                                         d e ++ l+ +f+ lD+ g Gv+s 
  MMETSP0890-20130614|41671_1  20 LECFARADTEKDGKLTLDQFRAALRADEVKAYittnqiptvspdncidtrqlldekaihalfsllsrdtnsidffsflvgfallddhDTERDNALRIVFELLDTSGEGVVSQ 131
                  467*********************9977666699***************************************************99999999****************995 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.051
    PF13499.1  11 kdgdgyldkeeLlrllkhl 29 
                  +++d +l+ ee++ + +  
  MMETSP0890-20130614|41671_1 182 SQQDTFLNCEEFVSFVNTN 200
                  5678888888888887765 PP

>> PF13833.1  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00065       2.2      31      51 ..      23      43 ..      22      45 .. 0.86
   2 ?    0.2   0.1      0.15   5.1e+02      25      52 ..      75     101 ..      65     103 .. 0.66
   3 !    7.9   0.0    0.0006       2.1      25      51 ..     112     138 ..     109     140 .. 0.84
   4 ?   -0.5   0.1      0.24   8.3e+02      42      51 ..     188     197 ..     174     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00065
    PF13833.1 31 frefDtdgdGkisfeEFcvll 51
                 f  +Dt++dGk++++ F ++l
  MMETSP0890-20130614|41671_1 23 FARADTEKDGKLTLDQFRAAL 43
                 6789**********9998876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.15
    PF13833.1  25 eevdilfrefDtdgdGkisfeEFcvlle 52 
                  + +++lf+++ +d  + i+f  F+v ++
  MMETSP0890-20130614|41671_1  75 KAIHALFSLLSRD-TNSIDFFSFLVGFA 101
                  5566666666444.56888888888775 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0006
    PF13833.1  25 eevdilfrefDtdgdGkisfeEFcvll 51 
                  + ++i+f ++Dt g G +s+   c+l+
  MMETSP0890-20130614|41671_1 112 NALRIVFELLDTSGEGVVSQSRVCALF 138
                  55899**************98777766 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.24
    PF13833.1  42 isfeEFcvll 51 
                  +++eEF++++
  MMETSP0890-20130614|41671_1 188 LNCEEFVSFV 197
                  7899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       299  (0.0218695); expected 273.4 (0.02)
Passed bias filter:                      268  (0.0196021); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 932.87
//
Query:       MMETSP0890-20130614|41681_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-05   22.1   1.9    8.8e-05   22.0   1.3    1.1  1  PF13436.1  Glycine-zipper containing OmpA-like membrane domain
    0.00044   19.7  12.6    0.00067   19.1   8.8    1.3  1  PF13488.1  Glycine zipper
     0.0026   17.2  12.5     0.0034   16.9   8.7    1.2  1  PF05433.10 Glycine zipper 2TM domain
  ------ inclusion threshold ------
       0.03   13.7  14.8      0.042   13.2  10.3    1.2  1  PF13441.1  YMGG-like Gly-zipper
       0.21   10.8   1.7       0.24   10.6   1.2    1.1  1  PF05818.7  Enterobacterial TraT complement resistance protein
          2    8.5  13.0        8.4    6.4   9.0    1.8  1  PF10439.4  Bacteriocin class II with double-glycine leader peptide
          2    8.5  11.6    2.4e+02    1.8   8.1    2.3  1  PF10247.4  Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> PF13436.1  Glycine-zipper containing OmpA-like membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.3   4.5e-08   8.8e-05      47      89 ..      26      67 ..       8      72 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.5e-08
    PF13436.1 47 eaaesaaegaavGaavGAaagaaaggagagaaiGAaaGllvGa 89
                  ++  + +ga vG+ vGA +ga +g    g+ +GA +G+ vG+
  MMETSP0890-20130614|41681_1 26 GVTVGTGVGATVGTGVGARVGARVGT-RVGTRVGARVGTRVGT 67
                 55667888888888888888888888.8888888888888886 PP

>> PF13488.1  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   8.8   3.4e-07   0.00067       2      41 ..      26      64 ..      25      68 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.4e-07
    PF13488.1  2 GaaiGAaaGAaiGaaaggagkGAliGAavGaaaGaliGay 41
                 G+++G ++GA +G+++g + +GA +G+ vG+ +Ga +G  
  MMETSP0890-20130614|41681_1 26 GVTVGTGVGATVGTGVGAR-VGARVGTRVGTRVGARVGTR 64
                 7888888888888888864.77777777777777777654 PP

>> PF05433.10  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   8.7   1.7e-06    0.0034       1      39 [.      29      67 ..      25      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.7e-06
   PF05433.10  1 vGaliGAaaGavaGaaigggggrllgavvGAaaGalaGn 39
                 vG+++GA +G  +Ga +g++ g+++g+ vGA +G+ +G+
  MMETSP0890-20130614|41681_1 29 VGTGVGATVGTGVGARVGARVGTRVGTRVGARVGTRVGT 67
                 699999999999999999989999999999999998887 PP

>> PF13441.1  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  10.3   2.2e-05     0.042       6      40 ..      30      63 ..      24      68 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.2e-05
                 XXXXXXXXXXXXXXXXXXXX--------------- CS
    PF13441.1  6 GAaiGAaaGAaiGaaaGgggkGAaiGAaaGalaGg 40
                 G+++GA +G  +Ga +G ++ G+ +G+ +Ga +G 
  MMETSP0890-20130614|41681_1 30 GTGVGATVGTGVGARVG-ARVGTRVGTRVGARVGT 63
                 55555555555555555.55555555555555544 PP

>> PF05818.7  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2   0.00012      0.24      88     134 ..      29      74 ..      17      76 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
    PF05818.7  88 ggavagaalGaavgaynsgsagaavgvglagalvgtladalveDviy 134
                   g+ +ga +G++vga  +   g+ vg + +ga vgt ++   e vi+
  MMETSP0890-20130614|41681_1  29 VGTGVGATVGTGVGARVGARVGTRVG-TRVGARVGTRVGTRFEVVIF 74 
                  34456788888888888888888888.78888888887776666655 PP

>> PF10439.4  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.0    0.0043       8.4      35      61 ..      29      55 ..      20      69 .. 0.48

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0043
    PF10439.4 35 aGalaGaatggavGglaGAlvGavvGa 61
                  G+++Ga++g+ vG+ +GA vG+ vG+
  MMETSP0890-20130614|41681_1 29 VGTGVGATVGTGVGARVGARVGTRVGT 55
                 344444444444444444444444333 PP

>> PF10247.4  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   8.1      0.12   2.4e+02       7      32 ..      27      52 ..      19      75 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.12
    PF10247.4  7 vkmGfimGaaVGgafGllfGgyaalr 32
                 v++G  +Ga+VG ++G+ +G     r
  MMETSP0890-20130614|41681_1 27 VTVGTGVGATVGTGVGARVGARVGTR 52
                 44444444444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       220  (0.0160913); expected 273.4 (0.02)
Passed bias filter:                      178  (0.0130193); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         7  (0.000511995); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.33u 0.35s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 292.89
//
Query:       MMETSP0890-20130614|41679_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       303  (0.0221621); expected 273.4 (0.02)
Passed bias filter:                      274  (0.020041); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.59
# Mc/sec: 414.29
//
Query:       MMETSP0890-20130614|41682_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   23.5   0.3     0.0002   20.4   0.2    2.2  1  PF10250.4 GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> PF10250.4  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.5e-08    0.0002     176     343 ..      34     204 ..      33     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.5e-08
    PF10250.4 176 speieelanklvkrllakggpflavHLRrekDffsgCehkgekellasprevgekeidseelrregkcPltpeevklllkalgklkttsvyvAtde.........................iyggeeeleelkaelpnlltketlaskeeleklkdselaaldqiicaeadvFigtygstfsarvkreRrllg 343
                  s++i+++++++ + l+ +g++ lavH Rre     gC+         ++r+     +   +   + +  +t++++k +l+a + + +  vy+A                            +++    l+++ +el  +l  +++ ++++ e+l   +++ ++q ic+ a +F ++  st+sa v  +R+ + 
  MMETSP0890-20130614|41682_1  34 SKRIRDIVQHINDTLF-TGRRVLAVHIRRE-STDLGCDD--------ARRYI----VC--PD-IKNRGVSTQQILKAILAAAKSSDADLVYLAHAGngppelvnerhflvnalkqdsflddVFS----LSQM-NELSSFLWDSNFHNQQNDENLAPFDISLIEQEICSTAHAFLPSARSTWSATVTFDREANS 204
                  6789999999999999.9999999999999.33448887........33333....11..11.122223789999******************7777************997776665554333....2333.3455556555666666666666679******************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       507  (0.0370831); expected 273.4 (0.02)
Passed bias filter:                      463  (0.0338648); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.42s 00:00:00.94 Elapsed: 00:00:00.95
# Mc/sec: 529.72
//
Query:       MMETSP0890-20130614|41689_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   16.2   0.1     0.0027   16.2   0.1    1.1  1  PF09423.5 PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PF09423.5  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     2e-07    0.0027     177     212 ..      27      62 ..       3      66 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2e-07
    PF09423.5 177 RkryaqyktdpdlqalhaavpwivvwDDHEvaNdaa 212
                   + ya   + p++++++++ p +++wDDH   +d  
  MMETSP0890-20130614|41689_1  27 VDAYADLDAIPEFAEFKQEQPLLATWDDHDYCDDNT 62 
                  56788889999******************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       176  (0.012873); expected 273.4 (0.02)
Passed bias filter:                      162  (0.011849); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.62
# Mc/sec: 258.96
//
Query:       MMETSP0890-20130614|41691_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.034   14.1   0.0    1.3  1  PF07386.6 Protein of unknown function (DUF1499)


Domain annotation for each model (and alignments):
>> PF07386.6  Protein of unknown function (DUF1499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.5e-06     0.034       5      93 ..      14      96 ..      12      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.5e-06
    PF07386.6  5 tdpaspncvssaleasrdaypeiapltleaspeealaallavveelgwtkvaaekeegyleaeatsklfgFvDdveirvdpdearidvR 93
                  +p++  c s+ ++ s+  +  ++p+t++   ++   al+++++ lg ++v  +++++ + a  +  +    D+ e++ +p++++i++R
  MMETSP0890-20130614|41691_1 14 LCPKEKFCASTIDDTSNGGKNFVEPWTYD--DNDYHLALDRLMTVLGSDVV--KSDDRFIVARRKGLWG--EDYFEFYCTPNDNTIQIR 96
                 6999999**99999888999*******86..8888899***********99..6888888888888774..9***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                         8  (0.000585138); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.31s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 665.26
//
Query:       MMETSP0890-20130614|41699_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       832  (0.0608543); expected 273.4 (0.02)
Passed bias filter:                      261  (0.0190901); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 1318.00
//
Query:       MMETSP0890-20130614|41702_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   14.6  20.2      0.046   13.0   4.6    2.7  2  PF13870.1  Domain of unknown function (DUF4201)
      0.017   14.8   6.1      0.017   14.8   4.2    4.1  5  PF11559.3  Afadin- and alpha -actinin-Binding
       0.25   10.9  10.8       0.15   11.6   0.8    3.0  2  PF08286.6  Spc24 subunit of Ndc80
        1.3    8.8  10.6      0.034   13.9   1.1    2.9  2  PF10814.3  Protein of unknown function (DUF2562)
        1.8    8.1   9.0       0.56    9.7   0.5    3.9  3  PF02120.11 Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> PF13870.1  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.9    0.0016       4.4      52     112 ..     281     341 ..     278     363 .. 0.83
   2 ?   13.0   4.6   1.7e-05     0.046      64     138 ..     415     489 ..     411     503 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0016
    PF13870.1  52 qalnekieernkeLkkLkkkttktvhalthlkeklhfleeeleelkkelkekeeklaklrk 112
                    l+  i+er++ ++++ +k   t  +++ l + +   +++++e++++l++  ++ +  ++
  MMETSP0890-20130614|41702_1 281 ACLDALIKERSQAVEAMAQKQLATAEIIQKLAQARDHATKQMREHHEKLASSMTETETAKM 341
                  568889*****************************************99987665544443 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.7e-05
    PF13870.1  64 eLkkLkkkttktvhalthlkeklhfleeeleelkkelkekeeklaklrkelykvklerdklrkenkklrqqggll 138
                   L +L+ ++ +  h+ ++l e +  lee le+lk++l++k+++ a+++++  ++k++   l++++++ +++ ++l
  MMETSP0890-20130614|41702_1 415 RLDALRVRCVTLGHEKANLAEHMELLEEHLERLKNDLDQKQAEVAEVEHQWAQTKAKLPGLKAKHAEAERRRADL 489
                  6889999999999******************************************************99987765 PP

>> PF11559.3  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.9   5.2e+03      77      93 ..     110     126 ..      92     137 .. 0.50
   2 ?   -1.3   1.7      0.58   1.6e+03      62      99 ..     163     200 ..     155     223 .. 0.65
   3 ?   -1.9   0.0      0.91   2.5e+03      79     117 ..     215     253 ..     210     254 .. 0.77
   4 ?   -4.2   7.9       4.8   1.3e+04      51     101 ..     297     349 ..     280     403 .. 0.54
   5 ?   14.8   4.2   6.4e-06     0.017      51     112 ..     434     495 ..     428     505 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.9
    PF11559.3  77 rlktqleqlerelallq 93 
                   l +++++le +la + 
  MMETSP0890-20130614|41702_1 110 LLDESVSSLEERLAKAS 126
                  33444444444444333 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.58
    PF11559.3  62 rkleaeierlqskierlktqleqlerelallqekerql 99 
                  r+ + +  + + + +rl+ +  +++r  all+++++++
  MMETSP0890-20130614|41702_1 163 RNETKSRLHRHAEQARLTCEIDAKKRHTALLKAADAAA 200
                  44445555555666666666666666666666665555 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.91
    PF11559.3  79 ktqleqlerelallqekerqlekklktleqklknekeel 117
                   t++ q  +e+ ++ ++e+ +++ +++l++ +++ +e l
  MMETSP0890-20130614|41702_1 215 NTENDQDDNEIPASRRAETWIQAYQSRLSTIVNEHREAL 253
                  577788888888888888888888888888888887765 PP

  == domain 4    score: -4.2 bits;  conditional E-value: 4.8
    PF11559.3  51 leqresleetlrkleae.ierlqskierlktqleqlerelallq.ekerqlek 101
                  ++q++  ++++ ++ a   ++ +++++  +++l+++ +e ++++ e+e+ql +
  MMETSP0890-20130614|41702_1 297 MAQKQLATAEIIQKLAQaRDHATKQMREHHEKLASSMTETETAKmEREAQLAT 349
                  33444444444333333033333334444455555555555333123333322 PP

  == domain 5    score: 14.8 bits;  conditional E-value: 6.4e-06
    PF11559.3  51 leqresleetlrkleaeierlqskierlktqleqlerelallqekerqlekklktleqklkn 112
                  +e+ e lee l +l+++++++q +++ ++ q +q++ +l +l++k++++e++ ++l   +++
  MMETSP0890-20130614|41702_1 434 AEHMELLEEHLERLKNDLDQKQAEVAEVEHQWAQTKAKLPGLKAKHAEAERRRADLADLARK 495
                  6899*********************************************9998887766554 PP

>> PF08286.6  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.9     0.032        87      11      53 ..     308     346 ..     295     369 .. 0.72
   2 ?   11.6   0.8   5.5e-05      0.15       4      46 ..     426     474 ..     423     498 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.032
    PF08286.6  11 lakelndleselenlqseleelkeeleeleeqenegkeedeee 53 
                  ++k ++  + +++++++  e+l ++++e+e+ + e     e++
  MMETSP0890-20130614|41702_1 308 IQKLAQARDHATKQMREHHEKLASSMTETETAKME----REAQ 346
                  34555666778888889999999999998888888....2223 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 5.5e-05
    PF08286.6   4 ldnekvrlakelndleselenlqseleelkeeleeleeqene......g 46 
                  l  ek +la+ ++ le+ le+l+++l+++++e+ e+e q  +      g
  MMETSP0890-20130614|41702_1 426 LGHEKANLAEHMELLEEHLERLKNDLDQKQAEVAEVEHQWAQtkaklpG 474
                  567999********************************98885555551 PP

>> PF10814.3  Protein of unknown function (DUF2562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.63   1.7e+03      36      70 ..     166     202 ..     163     220 .. 0.63
   2 ?   13.9   1.1   1.3e-05     0.034      19      92 ..     256     329 ..     249     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.63
    PF10814.3  36 taaelrrryregklarelaaaqe..tlaqelaaaqev 70 
                  t ++l r+ ++++l+ e+ a +   +l +   aa+e 
  MMETSP0890-20130614|41702_1 166 TKSRLHRHAEQARLTCEIDAKKRhtALLKAADAAAEL 202
                  5667788888888888887665411333333344444 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.3e-05
    PF10814.3  19 vdvtrGvvGlgvesarstaaelrrryregklarelaaaqetlaqelaaaqevvanlPealqearrkrrrkkrpl 92 
                   d +r v+G ++  a  ta  lr       l +e + a e++aq+  a++e++ +l +a ++a ++ r ++ +l
  MMETSP0890-20130614|41702_1 256 SDAARHVMGKTLGQAMPTALCLRGNACLDALIKERSQAVEAMAQKQLATAEIIQKLAQARDHATKQMREHHEKL 329
                  58899**********************************************************99988855544 PP

>> PF02120.11  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   7.5e+02      51      72 ..     109     130 ..     108     139 .. 0.81
   2 ?   -0.5   0.6      0.33   9.1e+02      53      66 ..     322     335 ..     310     370 .. 0.53
   3 ?    9.7   0.5   0.00021      0.56      47      76 ..     434     463 ..     430     470 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.28
   PF02120.11  51 elLeqnlprLreaLaeaGlqle 72 
                  +lL+++   L+e+La+a  + e
  MMETSP0890-20130614|41702_1 109 DLLDESVSSLEERLAKASAKAE 130
                  689999*********9877766 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.33
   PF02120.11  53 LeqnlprLreaLae 66 
                  ++++ + L +++ e
  MMETSP0890-20130614|41702_1 322 MREHHEKLASSMTE 335
                  55555555555444 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00021
   PF02120.11  47 petrelLeqnlprLreaLaeaGlqledlsv 76 
                  +e  elLe++l+rL+++L ++  ++++++ 
  MMETSP0890-20130614|41702_1 434 AEHMELLEEHLERLKNDLDQKQAEVAEVEH 463
                  57789*****************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                      1803  (0.131875); expected 273.4 (0.02)
Passed bias filter:                      540  (0.0394968); expected 273.4 (0.02)
Passed Vit filter:                        66  (0.00482738); expected 13.7 (0.001)
Passed Fwd filter:                        24  (0.00175541); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.27u 0.42s 00:00:01.69 Elapsed: 00:00:01.20
# Mc/sec: 1054.40
//
Query:       MMETSP0890-20130614|41705_1  [L=733]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.4   0.3        1.9    8.3   0.0    2.4  2  PF00424.13 REV protein (anti-repression trans-activator protein)


Domain annotation for each model (and alignments):
>> PF00424.13  REV protein (anti-repression trans-activator protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.019   2.6e+02      41      89 ..      13      64 ..       2      67 .. 0.75
   2 ?    8.3   0.0   0.00014       1.9      30      61 ..     562     593 ..     555     607 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.019
   PF00424.13 41 rRwrqrqkqilalaerilstpldrpld...epldlaiqelqkLtiqelpdpp 89
                 + w ++ + +++l ++ ++  ++++ d   +p+++++ +++++ + +l++ p
  MMETSP0890-20130614|41705_1 13 KNWSRKIREVNKLLNKEYAAKEEKKNDgepQPVEEELTHIKTIDMRRLQTIP 64
                 6799999999999999998876665432228999999999998888777665 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00014
   PF00424.13  30 eGtarqRrnrRrRwrqrqkqilalaerilstp 61 
                   Gt+r R ++ +R++++q+  +++ae+++ + 
  MMETSP0890-20130614|41705_1 562 YGTRRLRSKKFKRYQEKQQFYDTIAEKLFPEK 593
                  69*************************98664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       633  (0.046299); expected 273.4 (0.02)
Passed bias filter:                      277  (0.0202604); expected 273.4 (0.02)
Passed Vit filter:                        29  (0.00212112); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.41s 00:00:01.50 Elapsed: 00:00:01.01
# Mc/sec: 1739.14
//
Query:       MMETSP0890-20130614|41712_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       327  (0.0239175); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        11  (0.000804564); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 209.21
//
Query:       MMETSP0890-20130614|41715_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-49  168.8   0.0    1.8e-49  168.5   0.0    1.1  1  PF01134.17 Glucose inhibited division protein A
    1.4e-20   72.9   0.2    4.6e-19   68.1   0.0    2.7  3  PF13932.1  GidA associated domain 3


Domain annotation for each model (and alignments):
>> PF01134.17  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   0.0   2.6e-53   1.8e-49     212     391 ..       2     182 ..       1     183 [. 0.90

  Alignments for each domain:
  == domain 1    score: 168.5 bits;  conditional E-value: 2.6e-53
                  ----S-B-S-SSSS---.-----EEEEE--HHHHHHHHHTGGG-T.T----B-----TT-SSTTTTTTSSTT-S--EEEEEE------EEEEE-----S-HHHHHHHHTT----TT--EEE---EEEEEE--GGGB-TTSBB...SS-B--EE----------TTT---------HHHHHH--- CS
   PF01134.17 212 sgdkegeefsylnkpln.keqvecfltatneathkiikenlkksaklfegcieelgprycpsiedkivrladkeshqvfLepegleteliylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqllntLet...kkvkgLflAGqinGteGYeEaaaqGllAGinaarkakgk 391
                  ++++++ +fs++n++ + +  ++c+ t tn++th+i+ ++ ++   l     +++gprycpsi +k+ r+ +++sh v+Lepegl+t+l+y++g+s  +p+evq+++++si+GL na+iv+pGy +eyd++dp+ + ++L +   +  +gLf+AGqi Gt+GYeEaaa G++AG+naa+ a +k
  MMETSP0890-20130614|41715_1   2 PSENPPFAFSFINETPSpQGFIQCYRTGTNADTHAIVMNEKDT---LAPPSTDGTGPRYCPSIYKKVERFGHRSSHGVWLEPEGLNTNLVYPNGLSGAYPLEVQQRIINSIHGLTNARIVQPGYDVEYDFIDPTCMGHDLGLatgRGADGLFFAGQICGTTGYEEAAALGIIAGTNAALLALKK 182
                  56678899*****9997355678************99887775...445556889********************************************************************************998665522356899****************************998876 PP

>> PF13932.1  GidA associated domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.71   4.8e+03      58      67 ..     108     117 ..     106     119 .. 0.82
   2 ?    1.7   0.0     0.035   2.4e+02       9      40 ..     253     284 ..     247     291 .. 0.83
   3 !   68.1   0.0   6.8e-23   4.6e-19       2      70 ..     343     413 ..     342     415 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.71
    PF13932.1  58 rIsGvtpadi 67 
                   I+G t a+i
  MMETSP0890-20130614|41715_1 108 SIHGLTNARI 117
                  5999999998 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.035
    PF13932.1   9 rqqeqieklkrlenlkipedidyarisgLske 40 
                  rq+   + l++l++++ p ++ y+++ +L +e
  MMETSP0890-20130614|41715_1 253 RQNIIDRSLNELKSRRFPVSLWYDKVPSLFME 284
                  5554448999*****************99877 PP

  == domain 3    score: 68.1 bits;  conditional E-value: 6.8e-23
    PF13932.1   2 kYegYierqqeqieklkrlenlkipedidyar..isgLskearekLekirpetlgqasrIsGvtpadislL 70 
                  kY +Y+erq+++ + +kr+enl ip +++y++    +Ls+e+rekL+ +rp+t+++asrIsGvtpa +  L
  MMETSP0890-20130614|41715_1 343 KYGAYLERQEKEYDAYKRNENLLIPPELEYSAdtFPALSAEVREKLSLHRPKTFAEASRISGVTPASLVYL 413
                  9*****************************744499******************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      206  (0.0150673); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.68
# Mc/sec: 1564.68
//
Query:       MMETSP0890-20130614|41725_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-06   26.4   0.2    1.3e-05   25.1   0.0    1.8  2  PF00595.19 PDZ domain (Also known as DHR or GLGF)
     0.0013   18.4   0.0     0.0033   17.1   0.0    1.7  1  PF13180.1  PDZ domain
  ------ inclusion threshold ------
      0.096   12.5   0.0        0.2   11.5   0.0    1.5  1  PF04495.9  GRASP55/65 PDZ-like domain
       0.48   10.2   3.5        4.3    7.1   0.0    2.6  2  PF13985.1  YbgS-like protein


Domain annotation for each model (and alignments):
>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.4e+04      53      71 ..     184     202 ..     182     207 .. 0.57
   2 !   25.1   0.0   3.8e-09   1.3e-05       8      60 ..     227     275 ..     222     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 4
                  TTEBGTTSHHHHHHHHHHT CS
   PF00595.19  53 Ngvdvenvshdeavqaikg 71 
                  + ++  nvs d+ v++  +
  MMETSP0890-20130614|41725_1 184 DTTSHKNVSPDQPVHQDSE 202
                  5556666666666665544 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 3.8e-09
                  TTSH---EEEESSTTSSSSEEEEESTTTHHTTTTSBSTTCEEEEETTEBGTTS CS
   PF00595.19   8 krgglGfslkggsdkrdkgifvsevvpggaaeagglkeGDkIlsvNgvdvenv 60 
                  ++g+lG+ lk  +     gi v ++ p ++a+ +g+k++D+I+++N+ ++ ++
  MMETSP0890-20130614|41725_1 227 EPGPLGMDLKPCE----LGISVIRIKPASPADISGIKANDVIIGINQFNTDQI 275
                  5677888888644....5****************************9555544 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.6e-07    0.0033       3      43 ..     231     269 ..     210     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.6e-07
    PF13180.1   3 iGvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdg 43 
                  +G  +++ e   g++v+ +k++sPa+ +g+k++D+i+ +++
  MMETSP0890-20130614|41725_1 231 LGMDLKPCEL--GISVIRIKPASPADISGIKANDVIIGINQ 269
                  5666666666..*************************9996 PP

>> PF04495.9  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.7e-05       0.2      24      73 ..     227     269 ..     201     293 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.7e-05
    PF04495.9  24 gqgllGvslrlcslekaaenvwhvleveenSPaakagLvpksDYiigadk 73 
                  + g lG+ l+ c+l       + v+ +++ SPa+ +g+++ +D iig+++
  MMETSP0890-20130614|41725_1 227 EPGPLGMDLKPCELG------ISVIRIKPASPADISGIKA-NDVIIGINQ 269
                  446777777777777......89**************986.6******96 PP

>> PF13985.1  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.6     0.083   2.8e+02      45      81 ..     167     208 ..     163     221 .. 0.60
   2 ?    7.1   0.0    0.0013       4.3      10      47 ..     296     332 ..     290     347 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.083
    PF13985.1  45 pdakenlaPnnvDnskintgst.....gtslskdgtkssdnm 81 
                  p ++ n +P  + n +i+t+s      ++  ++d+++++++ 
  MMETSP0890-20130614|41725_1 167 PRSNSNSPPPSLSNYQIDTTSHknvspDQPVHQDSETKQNDE 208
                  677889999999999999996644444333333333333332 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0013
    PF13985.1  10 tatltlasgaalaadsgaqsnnGqanaaadaGqvapda 47 
                   a l+la +a+laa sg  + n + n  + a  v pd 
  MMETSP0890-20130614|41725_1 296 CARLSLAMSASLAAASGRIDRNSKDNVPKRAR-VHPDT 332
                  4779********************99988775.77775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       616  (0.0450556); expected 273.4 (0.02)
Passed bias filter:                      383  (0.0280135); expected 273.4 (0.02)
Passed Vit filter:                        30  (0.00219427); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.72
# Mc/sec: 1424.50
//
Query:       MMETSP0890-20130614|41728_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-07   31.7   0.3    1.6e-07   31.1   0.2    1.2  1  PF14015.1 Protein of unknown function (DUF4231)
      0.005   16.8   0.1      0.011   15.8   0.1    1.6  1  PF13682.1 MCP-signal associated domain


Domain annotation for each model (and alignments):
>> PF14015.1  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.2   2.3e-11   1.6e-07      11      88 ..      44     120 ..      37     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.3e-11
    PF14015.1  11 aerarrrynllriitiilgvlaavvpilvslnslgagsnwlkwvtvilsalvailaslatffklkerwrryrataEsl 88 
                   +r+r++ n l+++t++l +l +  +i+ s+ ++g  +++ + ++ +ls+++++++++ + +++++rw ++  +a + 
  MMETSP0890-20130614|41728_1  44 TVRYRDLSNNLKLATVVLQALVGS-AIFSSIRGDGDLARYIRVIAGFLSVVSTVATAVKNAMNYEARWTQHEEAATAY 120
                  5799*************6666333.5567777779999*********************************9999765 PP

>> PF13682.1  MCP-signal associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.6e-06     0.011      17      46 ..      11      40 ..       3      52 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.6e-06
    PF13682.1 17 seeeleveldhhqCrfGkWyygegkekige 46
                 +++++e e+  ++Cr+GkWy   +  ++++
  MMETSP0890-20130614|41728_1 11 DGDDEEKECRTRNCRLGKWYSHVKTIQLAH 40
                 56778888999*********7776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      554  (0.0405208); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.39s 00:00:00.91 Elapsed: 00:00:00.72
# Mc/sec: 692.28
//
Query:       MMETSP0890-20130614|41746_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       477  (0.0348888); expected 273.4 (0.02)
Passed bias filter:                      422  (0.030866); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.38s 00:00:00.94 Elapsed: 00:00:00.90
# Mc/sec: 713.58
//
Query:       MMETSP0890-20130614|41750_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   43.3   0.0    2.8e-11   43.0   0.0    1.1  1  PF00650.15 CRAL/TRIO domain
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.023   14.5   0.0    1.2  1  PF13716.1  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> PF00650.15  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   4.1e-15   2.8e-11      34     142 ..      21     126 ..       4     138 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 4.1e-15
   PF00650.15  34 lseeelvrllllvlerllklleedgqiegvtvviDmkgls..lskmlwkpisllkkilkilqdnyPerlkkilivnaPklfkvafklvkpfldektreKikfvspsntpat 142
                  ++ + +  +++++l+++l  l+   + + ++v+iD +  s   +   ++ + +++k++++lq+ yPerl+ki+++  P++   + +l+ ++ld+ktr+K++++++ nt+ +
  MMETSP0890-20130614|41750_1  21 VEPQAYAAHVCYTLDSVL--LPS--SATRLVVLIDVRAGSdwPNPSASRLVPFVRKCANLLQESYPERLRKIIVYPLPFWLYHLGELILALLDAKTRDKVVLLGSANTE-A 126
                  556678899999999987..777..8899*******988844344444448999*************************************************999995.3 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.3e-06     0.023      11     120 ..       4     118 ..       1     155 [. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.3e-06
    PF13716.1  11 regrpvlvfi.akyl..pstddydkllkyllhtledeivgkpyvlVyfhtglssenkpsls....wlkklyktlprrykknlkkvylvhpstflksilstllslfvskkflrkkviy 120
                  ++g +++++  a+y    + + y   + y l+++  + +++  v+ ++ +  s   +ps s    +++k+ ++l+++y+++l k+++  p  f+  +l +l  +++  k  r kv+ 
  MMETSP0890-20130614|41750_1   4 KTGDQLVLIEgARYDlnVEPQAYAAHVCYTLDSVLLPSSATRLVVLIDVRAGSDWPNPSASrlvpFVRKCANLLQESYPERLRKIIVY-PLPFWLYHLGELILALLDAKT-RDKVVL 118
                  7889999999555556543447777777777777677777779999999998874444544222278999***************995.555555555577777778888.677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       190  (0.013897); expected 273.4 (0.02)
Passed bias filter:                      186  (0.0136044); expected 273.4 (0.02)
Passed Vit filter:                        17  (0.00124342); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.41s 00:00:00.87 Elapsed: 00:00:00.81
# Mc/sec: 550.27
//
Query:       MMETSP0890-20130614|41752_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.3   0.0      0.019   14.7   0.0    3.6  3  PF00400.27 WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PF00400.27  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06     0.019      13      39 .]      46      72 ..      38      72 .. 0.96
   2 !   11.9   0.0   1.1e-05      0.15      23      39 .]     112     128 ..      78     128 .. 0.86
   3 !    3.6   0.0    0.0042        58      12      30 ..     145     163 ..     142     175 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-06
                 SEEEEEEESSSTEEEEEETTSEEEEEE CS
   PF00400.27 13 pVtcvafspdgpllasgSrDgtirlWd 39
                 pV+ + +sp+g +l+++ +D+ +r+Wd
  MMETSP0890-20130614|41752_1 46 PVSHLEISPNGIFLLTSHHDSALRMWD 72
                 89************************9 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.1e-05
                  STEEEEEETTSEEEEEE CS
   PF00400.27  23 gpllasgSrDgtirlWd 39 
                   +l+a+gS+Dg + +W+
  MMETSP0890-20130614|41752_1 112 HHLIATGSEDGHLLMWN 128
                  589*************7 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0042
                  SSEEEEEEESSSTEEEEEE CS
   PF00400.27  12 spVtcvafspdgpllasgS 30 
                  ++V +++ +p + lla+++
  MMETSP0890-20130614|41752_1 145 DAVLAIDSHPVYDLLATAG 163
                  68999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       412  (0.0301346); expected 273.4 (0.02)
Passed bias filter:                      342  (0.0250146); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.35s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 949.33
//
Query:       MMETSP0890-20130614|41757_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       603  (0.0441047); expected 273.4 (0.02)
Passed bias filter:                      384  (0.0280866); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.41s 00:00:00.78 Elapsed: 00:00:00.70
# Mc/sec: 383.42
//
Query:       MMETSP0890-20130614|41754_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   37.3   0.1    3.3e-09   36.3   0.1    1.4  1  PF11998.3 Protein of unknown function (DUF3493)


Domain annotation for each model (and alignments):
>> PF11998.3  Protein of unknown function (DUF3493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   2.4e-13   3.3e-09       5      73 ..      55     130 ..      52     131 .. 0.93

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.4e-13
    PF11998.3   5 lkarLraEaqaPfRglRrflylalaASaglGlfimllrlla.......geeleetlknLaiqigavalfvfLlrle 73 
                   k+rLr+E+ +PfR++R +l++  + Sa++ l + ll + +       ++ ++ ++ +++i+i+ va+ ++L ++e
  MMETSP0890-20130614|41754_1  55 VKQRLREEIDSPFRKVRLVLFGFSTISATVALYFSLLTIGKsaanfadAPPMQIATRDFGINIASVAVCGALTYRE 130
                  689*****************************9999988878889***************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       336  (0.0245758); expected 273.4 (0.02)
Passed bias filter:                      318  (0.0232592); expected 273.4 (0.02)
Passed Vit filter:                        21  (0.00153599); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.59
# Mc/sec: 1263.16
//
Query:       MMETSP0890-20130614|41759_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-51  172.2   2.7    1.6e-25   89.3   1.5    2.1  2  PF00348.12 Polyprenyl synthetase
  ------ inclusion threshold ------
      0.022   14.1   1.3      0.041   13.2   0.9    1.5  1  PF07307.6  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1


Domain annotation for each model (and alignments):
>> PF00348.12  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   1.5   2.4e-29   1.6e-25       6     129 ..     118     258 ..     113     301 .. 0.83
   2 !   81.7   0.0     5e-27   3.4e-23      97     246 ..     305     459 ..     280     473 .. 0.78

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 2.4e-29
                  HHHHT-----HHHHHHHHHHHHHS................HHHHHHHHHHHHHHHHHHHHHHHHCCCTT-SB----B.HHHH---HHHCHHHHHHHHHHHHHHHHCHCCTCCCC.HHHHHHHHHHHHHHHH---HHHHHCS CS
   PF00348.12   6 leyllagGKriRpllvvlaaralg................vesekllalaaaiElihtasLvhDDlmDnsdlRRGkptvhkkfgeavailagdalllkafellaklkevrpeak.likiselanasgaqgevgqlkdlese 129
                  l+ + ++GKr Rp+++ l +ral                 + ++  ++l+ ++E+ih asL+hDDl+D++d+RRG   vh+  ++++a++agd+ll+ka ++la l++++  ++ ++++  l++ +++q++v q    +s 
  MMETSP0890-20130614|41759_1 118 LYFNKQSGKRFRPTIIALLSRALPlsstnvhnaptkmvtsDIPSLQAKLGQITEMIHVASLIHDDLLDDADTRRGGDAVHIVHNNKIAVMAGDYLLAKASIMLATLGHIKVVETmAQALDALVTGEVMQIKVTQGAAKKSV 258
                  688999*****************99*************999999999************************************************************7665443034445556666666666644433333 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 5e-27
                  CCTCCCCHHHHHHHHHHHHHHH..H--.-HHHHHCS--G--HHHHHHHHHHHTHHHCHHHHHHHHCC----..-CCHHHHHHHHHH---HHHHHHHHHHH---TTT----.--TTTTT---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCH CS
   PF00348.12  97 evrpeaklikiselanasgaqg..evg.qlkdlesedkklsleeylrivksKTaaLfeasvqlaaivagad..eeeekelkdfglelGlaFQivDDilDltadeeelgKpvgsDlqegkltlpvllalekaseeqrkllkeasekklseaaakkv 246
                  ++++ +k+++ s+ ++ +++ +  ++   + +++s++++ + e ylr  ++KTa+L++ +++  a++ag++  ++ +  +++fg +lGlaFQivDD+lD+  d++ lgKp+g+Dl+ g  t+p+l+a++   +    + +  ++k +   a + v
  MMETSP0890-20130614|41759_1 305 YFQSLRKILDTSQDFSSKSVSTiqAIStDATQINSAAERAEFELYLRKSYYKTASLICDACKSTALLAGYSfdSSIASGCEEFGFHLGLAFQIVDDVLDFAVDSNDLGKPAGADLSLGLATAPILYAVRDYPQLRPLIDRRFKAKGDVTTAYNLV 459
                  4445555555655555544443112333778888898899******************************9989999***************************************************998887777777777766666555555 PP

>> PF07307.6  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9     6e-06     0.041      36     112 ..     165     245 ..     152     350 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6e-06
    PF07307.6  36 eryivtamlvqiAldtHdkvse.anaeke....eekkerqLtVLAGdyYSglYYelLseskdialiraLaeaikeinekkik 112
                  +   +t m +++A  +Hd   + a++ +     +   + ++ V+AGdy  +    +L+ +++i+ ++++a+a+    +  ++
  MMETSP0890-20130614|41759_1 165 KLGQITEM-IHVASLIHDDLLDdADTRRGgdavHIVHNNKIAVMAGDYLLAKASIMLATLGHIKVVETMAQALDALVTGEVM 245
                  55555555.788999999887635444441111456899*********************************9876654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       693  (0.0506875); expected 273.4 (0.02)
Passed bias filter:                      413  (0.0302077); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.45s 00:00:01.34 Elapsed: 00:00:00.93
# Mc/sec: 1308.98
//
Query:       MMETSP0890-20130614|41762_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   11.6   0.9       0.39   10.4   0.7    1.6  1  PF09415.5 CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> PF09415.5  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   2.8e-05      0.39      30      63 ..     109     141 ..      93     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.8e-05
    PF09415.5  30 kyldiFvrEAvaRaaeeaeaegqekflevedLEk 63 
                  k   + v EAv+R++  a + ++++ le+ +LE+
  MMETSP0890-20130614|41762_1 109 KRRAVAVVEAVCRSLSFASEAAKSQ-LEKLSLER 141
                  5556779*********777777666.99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       593  (0.0433733); expected 273.4 (0.02)
Passed bias filter:                      448  (0.0327677); expected 273.4 (0.02)
Passed Vit filter:                        31  (0.00226741); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.47s 00:00:00.92 Elapsed: 00:00:00.87
# Mc/sec: 583.94
//
Query:       MMETSP0890-20130614|41772_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   11.6   0.7       0.22   10.9   0.2    1.6  2  PF03776.9 Septum formation topological specificity factor MinE


Domain annotation for each model (and alignments):
>> PF03776.9  Septum formation topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.14   1.9e+03      30      33 ..      28      31 ..       6      44 .. 0.61
   2 ?   10.9   0.2   1.6e-05      0.22      31      47 ..      60      77 ..      48      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.14
                 HHHH CS
    PF03776.9 30 lkee 33
                 lkee
  MMETSP0890-20130614|41772_1 28 LKEE 31
                 3333 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHH--...- CS
    PF03776.9 31 keeileViskYveide.e 47
                 ++e+++Vi+++v+ +e +
  MMETSP0890-20130614|41772_1 60 RDELMKVIEEHVKNEEdD 77
                 89***********88844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       449  (0.0328408); expected 273.4 (0.02)
Passed bias filter:                      404  (0.0295494); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.44s 00:00:00.75 Elapsed: 00:00:00.98
# Mc/sec: 205.40
//
Query:       MMETSP0890-20130614|41773_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       245  (0.0179198); expected 273.4 (0.02)
Passed bias filter:                      195  (0.0142627); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:00.79
# Mc/sec: 194.14
//
Query:       MMETSP0890-20130614|41769_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00023   20.0   0.0     0.0003   19.7   0.0    1.1  1  PF01643.12 Acyl-ACP thioesterase
     0.0014   18.9   0.0        1.4    9.2   0.0    2.4  2  PF13279.1  Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.083   12.9   0.0        6.9    6.7   0.0    2.6  2  PF03061.17 Thioesterase superfamily


Domain annotation for each model (and alignments):
>> PF01643.12  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.5e-08    0.0003     104     218 ..      98     236 ..      80     275 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.5e-08
                  EEEEEEEEEEE-TTT-SEE---GGGTGGG...................T-EE-SS------.----TT-EEEEEE--GGGEETTTCE-GGGHHHHHHHH.....S-HHHHCTEEEEEEEEEE-S------EEEEEEEEE CS
   PF01643.12 104 lvratsvwvlmnqetrrlskvpeevraeie..................keesekklkklpk.lektaesirkgltvrysDlDvnqHVNNvkYlgwiles.....lpqeilethelkkitleYrkEvqrddvveslteve 218
                  +++   + v ++++  +   +p  vr+ i                    + +e +lk+ +   +  +++   + +vr s  D  +HVNN+k+   + ++     + ++++  ++++ ++l+Y k+   +d +++  +++
  MMETSP0890-20130614|41769_1  98 IATTRGTCVYLDKTLTKSTPLPSTVRNAIVdrlekpnliydtllnnarASLQEVSLKQNKDsIHIRDTDAAWNTRVRCSECDALGHVNNAKWALLVADAlrmspITSSVIGAKTPELLHLDYLKPAFPGDIIHASVALS 236
                  45555667777777777777777777777777778888888887666544444444444333666677888999*********************999833333457899999****************9999766555 PP

>> PF13279.1  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00031       1.4      44     120 ..      52     125 ..      14     131 .. 0.74
   2 !    7.2   0.0    0.0013       5.9       1      66 [.     173     232 ..     173     255 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00031
    PF13279.1  44 lilrsaeiryrrplk.ppdr.ltvelrvidwdeksfflehrfvspadgrkrpaargeevlvvidrtkr.kaplPpelraa 120
                  l+ r +   +  +l  +  + + v+ r++ ++ +sf +e+ +    ++     a+++ ++v++d t + + plP  +r a
  MMETSP0890-20130614|41769_1  52 LVFRTHGAAFH-ELEpWKLSqVSVIPRLTAVGHSSFNFECLLKN--ET---LIATTRGTCVYLDKTLTkSTPLPSTVRNA 125
                  55555555555.4552333346788999**************44..33...47***********9874488888766655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0013
    PF13279.1   1 vrpgdlD.nghmnnarylryleearvdflertglarllaelgiglilrsa.........eiryrrplkppdrltve 66 
                  vr +++D +gh+nna+   +  +a                 ++++i++s+         + +y++p++p+d ++  
  MMETSP0890-20130614|41769_1 173 VRCSECDaLGHVNNAKWALLVADAL----------------RMSPITSSVigaktpellHLDYLKPAFPGDIIHAS 232
                  8999**********99995444432................23555555555557888899999999999988765 PP

>> PF03061.17  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.019        88      50      74 ..      72      96 ..      43      98 .. 0.90
   2 ?    6.7   0.0    0.0015       6.9      36      53 ..     215     232 ..     214     236 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.019
                 EEEEEEEEEE-SSEEEEEEEEEETT CS
   PF03061.17 50 ltvearvlrlgrtsavvevevrded 74
                 + v  r++ +g +s+ +e+ +++e+
  MMETSP0890-20130614|41769_1 72 VSVIPRLTAVGHSSFNFECLLKNET 96
                 6677899*************99985 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
                  EEEEESS---TTSEEEEE CS
   PF03061.17  36 lnidFlrpvrlgdvltve 53 
                  l++d+l+p+ +gd +++ 
  MMETSP0890-20130614|41769_1 215 LHLDYLKPAFPGDIIHAS 232
                  689**********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       342  (0.0250146); expected 273.4 (0.02)
Passed bias filter:                      314  (0.0229666); expected 273.4 (0.02)
Passed Vit filter:                        24  (0.00175541); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.40s 00:00:00.98 Elapsed: 00:00:00.73
# Mc/sec: 948.69
//
Query:       MMETSP0890-20130614|41787_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00039   20.4   0.0    0.00091   19.2   0.0    1.7  1  PF02798.15 Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.07   12.9   0.1       0.22   11.3   0.0    1.9  1  PF13410.1  Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> PF02798.15  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.3e-07   0.00091       1      74 [.      16      98 ..      16     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.3e-07
                 EEEEEESSSCHHHHHHHHHHHTT--EEEEEEGTTCCHCHHHHHHHHCTTT......S-SSEEEETTTEEEE...SHHHHHHHH CS
   PF02798.15  1 stltlfnhrgraeslrillaekgveyeivrvdfeagegkspewlklnpki......grvPaledgdglklt...eSlAIarYl 74
                 ++lt+fn+rg +e++r+ l   + ++e+ r+ +    g +++++            g vP+le+ d+++ +   +S A++r+l
  MMETSP0890-20130614|41787_1 16 YKLTYFNVRGTVECVRLCLCLVDESWEDCRYPIRGFMGVAADFVADQAAGkfrvnmGSVPILEIRDDNQTWhlgQSAAMLRFL 98
                 68**************************9999855555556666666666888899*********777666444888888887 PP

>> PF13410.1  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.2e-05      0.22      14      48 ..     171     208 ..     167     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.2e-05
                  THGGG------SS....-------HHHHHHHHHHHHHH CS
    PF13410.1  14 aLdaleahLadgp...fllGdrpslaDialapflvrld 48 
                  +L ale+ L  +    +  G +p+++D+a+++ l  + 
  MMETSP0890-20130614|41787_1 171 LLVALESALPSSNplpWVVGTEPTIGDVAIYHLLSTAS 208
                  6779999999888999***************9996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       211  (0.015433); expected 273.4 (0.02)
Passed bias filter:                      202  (0.0147747); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.39s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 944.85
//
Query:       MMETSP0890-20130614|41792_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-12   45.0   0.1    1.1e-11   44.4   0.0    1.3  1  PF10184.4 Uncharacterized conserved protein (DUF2358)


Domain annotation for each model (and alignments):
>> PF10184.4  Uncharacterized conserved protein (DUF2358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   8.2e-16   1.1e-11       2     113 .]      67     179 ..      66     179 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 8.2e-16
    PF10184.4   2 evieaLredlpklfekeldysiYsedveFedpl.tkfrtlerYkknlallrflgrlffadvklellkitqteed.eiktrWtlsglprlpwkpklsfdGtStlklnkdglivsH 113
                  + i++Lred++ +f+++l y+iY++ +   dp   ++ +l  Y++ +a++r+ +++   dv++  l+ + +++  +i  +W  ++ ++   k+   ++++St++ln++g +++H
  MMETSP0890-20130614|41792_1  67 RCIDVLREDYAVFFDRDLRYEIYTKGLRIVDPSgVEIWGLAAYRQFFAAVRLFRKMACDDVSMMRLNTQYDANRqQIILQWYSKWNVKGA-KEPAYVSAVSTFHLNNNGHVHKH 179
                  57899***************************8346666****************99999998877777777767999999888877665.556679****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       326  (0.0238444); expected 273.4 (0.02)
Passed bias filter:                      246  (0.017993); expected 273.4 (0.02)
Passed Vit filter:                        20  (0.00146284); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.90
# Mc/sec: 947.89
//
Query:       MMETSP0890-20130614|41797_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-06   27.4   1.4    4.1e-06   26.1   0.9    1.7  1  PF12799.2  Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.025   14.4   0.0       0.14   12.1   0.0    2.4  1  PF00560.28 Leucine Rich Repeat
      0.037   14.0   0.1       0.32   11.2   0.0    2.6  2  PF13504.1  Leucine rich repeat
      0.044   13.5   1.1       0.12   12.1   0.1    2.1  2  PF08863.5  YolD-like protein
      0.052   13.2   0.0       0.16   11.6   0.0    1.8  1  PF02269.11 Transcription initiation factor IID, 18kD subunit
       0.06   12.9   0.5       0.43   10.2   0.1    2.5  2  PF13855.1  Leucine rich repeat


Domain annotation for each model (and alignments):
>> PF12799.2  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.9   1.8e-09   4.1e-06       2      42 ..      10      52 ..       9      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.8e-09
    PF12799.2  2 nLevLdLsnNnIkdlppelanLpn.LktLnLsnNp.isdlsaL 42
                  L+vLdLs+++I++lp el++L+n L +L L+ +p i + s+L
  MMETSP0890-20130614|41797_1 10 GLKVLDLSRTQITELPLELGRLNNtLHELELTDTPyIASSSPL 52
                 69*********************99*********856777777 PP

>> PF00560.28  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     6e-05      0.14       2      22 .]      11      31 ..      10      31 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6e-05
                 ESEEEETSSBCBCHHHHHHHH CS
   PF00560.28  2 LeeLdLsgNnltslppslsnL 22
                 L++LdLs++++t+lp +l+ L
  MMETSP0890-20130614|41797_1 11 LKVLDLSRTQITELPLELGRL 31
                 99*************988765 PP

>> PF13504.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.32       3      17 .]      11      25 ..      10      25 .. 0.96
   2 ?   -2.3   0.0       4.2   9.5e+03      11      16 ..      33      38 ..      27      52 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    PF13504.1  3 LkeLdLsgnrLtsLP 17
                 Lk+LdLs++++t+LP
  MMETSP0890-20130614|41797_1 11 LKVLDLSRTQITELP 25
                 9*************9 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4.2
    PF13504.1 11 nrLtsL 16
                 n L++L
  MMETSP0890-20130614|41797_1 33 NTLHEL 38
                 445544 PP

>> PF08863.5  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   2.6e+03      19      37 ..      82     100 ..      67     109 .. 0.61
   2 ?   12.1   0.1   5.3e-05      0.12      38      89 ..     161     210 ..     145     212 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
    PF08863.5  19 erpvLdedqleeiekllse 37 
                    ++ +++  e+i++++  
  MMETSP0890-20130614|41797_1  82 IYREFTDEYSERINDIIDA 100
                  3466777778888888865 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.3e-05
    PF08863.5  38 aleselevlityykdgeietitgtihkidelnkvlkitdafsntikikfedI 89 
                  + e+el+++  yy+   + +i+ +ih+i  +n+++  ++  ++t  +++edI
  MMETSP0890-20130614|41797_1 161 SAEFELKLRAFYYDRIDVTRIESYIHDIFTINNTVVSNQ--NDTKPLELEDI 210
                  46889999999**************************99..99999*99999 PP

>> PF02269.11  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     7e-05      0.16      32      69 ..     181     219 ..     176     240 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-05
   PF02269.11  32 vrgyliellq.qaakvaklrgsrkitlEDllfliRkDkk 69 
                  ++ y+ ++ + + + v+++++++ ++lED+ fli +  +
  MMETSP0890-20130614|41797_1 181 IESYIHDIFTiNNTVVSNQNDTKPLELEDIQFLIQHAAR 219
                  567899987615556788889999**********99765 PP

>> PF13855.1  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00019      0.43      23      44 ..       7      28 ..       1      43 [. 0.80
   2 ?   -0.3   0.0      0.37   8.4e+02      21      45 ..     116     140 ..     106     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
    PF13855.1 23 glsnLkvLdLsgnnlksispea 44
                 +++ LkvLdLs++ +++++ e+
  MMETSP0890-20130614|41797_1  7 KCEGLKVLDLSRTQITELPLEL 28
                 4999************998765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.37
    PF13855.1  21 FkglsnLkvLdLsgnnlksispeaf 45 
                    + ++L  Ld+ +++ k+isp+++
  MMETSP0890-20130614|41797_1 116 CRNADRLFPLDIIKHKYKHISPKTI 140
                  5666778889999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       467  (0.0341574); expected 273.4 (0.02)
Passed bias filter:                      320  (0.0234055); expected 273.4 (0.02)
Passed Vit filter:                        35  (0.00255998); expected 13.7 (0.001)
Passed Fwd filter:                         6  (0.000438853); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.41s 00:00:01.07 Elapsed: 00:00:00.77
# Mc/sec: 1076.80
//
Query:       MMETSP0890-20130614|41813_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.048   13.6   0.0    1.4  1  PF00249.26 Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> PF00249.26  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.5e-06     0.048       5      24 ..      41      60 ..      39      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.5e-06
                 -HHHHHHHHHHHHHTTS-.H CS
   PF00249.26  5 TteEdellvdavkqlGggtW 24
                 + eE e l+ av+++G +++
  MMETSP0890-20130614|41813_1 41 SHEECEALIAAVEEHGFENF 60
                 78**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       361  (0.0264043); expected 273.4 (0.02)
Passed bias filter:                      345  (0.0252341); expected 273.4 (0.02)
Passed Vit filter:                        32  (0.00234055); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 289.88
//
Query:       MMETSP0890-20130614|41820_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       257  (0.0187975); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        14  (0.00102399); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.39s 00:00:01.01 Elapsed: 00:00:00.88
# Mc/sec: 942.20
//
Query:       MMETSP0890-20130614|41825_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-24   85.1   0.0    1.1e-20   73.5   0.0    3.0  2  PF01764.20 Lipase (class 3)
     0.0077   16.0   0.9      0.016   14.9   0.1    2.0  2  PF12697.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.065   12.8   0.0       0.16   11.6   0.0    1.7  1  PF12695.2  Alpha/beta hydrolase family
       0.15   11.3   0.0        4.5    6.4   0.0    2.6  2  PF11187.3  Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00041       1.4       1      29 [.     480     508 ..     480     565 .. 0.85
   2 !   73.5   0.0   3.1e-24   1.1e-20      34     140 ..     607     720 ..     593     722 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00041
                  EEEEE-E-SHHHHHHHHHHTECCCTTCGG CS
   PF01764.20   1 vvafRGtetaeewltdldislvevdelle 29 
                  v+afRG+ + + w +++di+++ +    +
  MMETSP0890-20130614|41825_1 480 VIAFRGSASTKHWSSNIDIRQYRLALRND 508
                  79******************998876544 PP

  == domain 2    score: 73.5 bits;  conditional E-value: 3.1e-24
                  EEE---HHHHHHHHHHHHHHHHHHHHHST.....T.SEEEEE-------HHHHHHHHHHHT-......TTTEEEEEES-S----HHHHHHHHH------EEEEEETTBSGGG-S-T CS
   PF01764.20  34 kvhkgfleayksareqvlkelkrllekyp.....d.ykivvtGHSLGGalAlLaaadlaenglnk...sslvtvytfGqPrvgnkefaelveeklkkskvlrvvnenDivprlppa 140
                   vh+gf+ +y  +r+++++ + +   +       +  +i +tGHSLGGa A+La+adla++ l     + ++t++tfG+Prvgn+ +a+ +    ++  ++rvvn++Div+ lp +
  MMETSP0890-20130614|41825_1 607 LVHRGFWFSYVGVRDDLHRIILQTCLHDGieggrKiERILITGHSLGGAQATLASADLAAHALPYlnsNIRLTLVTFGAPRVGNRVWARTHAILCPD--SWRVVNDGDIVTGLPRF 720
                  79*********999998888777333333356666699**********************987767779***********************99999..************99976 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.65   2.2e+03     113     121 ..     308     316 ..     231     422 .. 0.55
   2 !   14.9   0.1   4.8e-06     0.016      55     124 ..     622     696 ..     581     820 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.65
                  HHHHHHHHH CS
    PF12697.2 113 psllrrlla 121
                  +++l+r+l 
  MMETSP0890-20130614|41825_1 308 KTTLDRVLD 316
                  233333333 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 4.8e-06
                  HHHHHHHH--...........--EEEE--------HHHHHH----.EEEEEEE------STT---TTHHHHHHHHHH--- CS
    PF12697.2  55 dlaalldalgl..........rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpasalrpagpsllrrllagra 124
                  dl++++ +++l          +++ + GHSlGga+a++a a+     ++l ++++ + l+     ++g + + + +++r 
  MMETSP0890-20130614|41825_1 622 DLHRIILQTCLhdgieggrkiERILITGHSLGGAQATLASAD--LAAHALPYLNSNIRLTL---VTFGAPRVGNRVWART 696
                  56666655555556677777799**************99987..45788888888886666...4444444444444333 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.7e-05      0.16      55      78 ..     637     670 ..     579     794 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.7e-05
    PF12695.2  55 l...dleriilvGhSlGGgvalelag.......r 78 
                  +   ++eri + GhSlGG+ a+++ +        
  MMETSP0890-20130614|41825_1 637 EggrKIERILITGHSLGGAQATLASAdlaahalP 670
                  2444899***************977644444440 PP

>> PF11187.3  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.041   1.4e+02      34      59 ..     474     498 ..     458     506 .. 0.81
   2 ?    6.4   0.0    0.0013       4.5      85     106 ..     644     665 ..     633     693 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.041
    PF11187.3  34 leegtlvvaFRGTddtlvgWkeDfnm 59 
                  +++  lv+aFRG  +++  W  ++++
  MMETSP0890-20130614|41825_1 474 VHKPWLVIAFRGS-ASTKHWSSNIDI 498
                  5677799*****9.999999998875 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0013
    PF11187.3  85 kiylgGHSKGGnlAvyaaanae 106
                  +i+++GHS GG  A+ a+a++ 
  MMETSP0890-20130614|41825_1 644 RILITGHSLGGAQATLASADLA 665
                  699**************99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       698  (0.0510532); expected 273.4 (0.02)
Passed bias filter:                      470  (0.0343768); expected 273.4 (0.02)
Passed Vit filter:                        58  (0.00424225); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.38u 0.37s 00:00:01.75 Elapsed: 00:00:01.40
# Mc/sec: 1461.78
//
Query:       MMETSP0890-20130614|41837_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   41.4   0.0    1.7e-10   41.1   0.0    1.2  1  PF00300.17 Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> PF00300.17  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.2e-14   1.7e-10       1      71 [.      53     122 ..      53     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.2e-14
                  EEEEEE---BHCCCTTBGGGTCC--B-----HHHHHHHTHHHH...TTHCESEEEEESSHHHHHHHHHHCCCCE CS
   PF00300.17   1 rlylvRHGeselnkegrlqgwsdvpLtekGreqarelgkkLkr...adlqidavytSplkRaiqTaeilleeld 71 
                  +++l+RHG+ + ++   +++++++ Lt  Gr qa ++g++L++   +++ + +  +S+++Ra +Ta+i++  l 
  MMETSP0890-20130614|41837_1  53 HIVLIRHGQYV-ET---YKEDEKRILTSLGRLQAAKTGERLRDmlkDSDAPVRLRVSNMTRAKETAAIIQPYLP 122
                  69*******66.22...44444445***************7776668889999***************998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       247  (0.0180661); expected 273.4 (0.02)
Passed bias filter:                      243  (0.0177736); expected 273.4 (0.02)
Passed Vit filter:                        25  (0.00182855); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.38s 00:00:00.83 Elapsed: 00:00:00.83
# Mc/sec: 528.35
//
Query:       MMETSP0890-20130614|41841_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.7    9.7   6.3       0.57    9.9   2.5    2.0  2  PF00401.15 ATP synthase, Delta/Epsilon chain, long alpha-helix domain


Domain annotation for each model (and alignments):
>> PF00401.15  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.5   4.2e-05      0.57      15      39 ..      45      69 ..      39      70 .. 0.94
   2 ?   -0.4   0.0     0.069   9.5e+02      14      23 ..     104     113 ..      92     119 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHH----HHHHHHHHHHHH CS
   PF00401.15 15 AeerLakaegdkeyirAeaaLkrAr 39
                 A e+La  ++d++ ++Ae+a +rAr
  MMETSP0890-20130614|41841_1 45 ALEALASISDDQNEAKAEVAARRAR 69
                 889*********************9 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.069
                  HHHHHHHHHH CS
   PF00401.15  14 rAeerLakae 23 
                    +e +++a+
  MMETSP0890-20130614|41841_1 104 NSQEEINEAS 113
                  3344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       364  (0.0266238); expected 273.4 (0.02)
Passed bias filter:                      275  (0.0201141); expected 273.4 (0.02)
Passed Vit filter:                        22  (0.00160913); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.35s 00:00:00.74 Elapsed: 00:00:00.73
# Mc/sec: 466.14
//
Query:       MMETSP0890-20130614|41843_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.2   0.0        0.3   10.5   0.0    1.3  1  PF12672.2 Protein of unknown function (DUF3793)


Domain annotation for each model (and alignments):
>> PF12672.2  Protein of unknown function (DUF3793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.2e-05       0.3     108     128 ..     236     256 ..     225     263 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.2e-05
    PF12672.2 108 EiGlfLgYPleDVkgFienkg 128
                  E+G +LgYP++ V+++i+n+ 
  MMETSP0890-20130614|41843_1 236 EVGRILGYPPQAVADYIRNEM 256
                  9****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       170  (0.0124342); expected 273.4 (0.02)
Passed bias filter:                      165  (0.0120685); expected 273.4 (0.02)
Passed Vit filter:                        16  (0.00117028); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.79
# Mc/sec: 1058.64
//
Query:       MMETSP0890-20130614|41850_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       274  (0.020041); expected 273.4 (0.02)
Passed bias filter:                      237  (0.0173347); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 493.10
//
Query:       MMETSP0890-20130614|41852_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       265  (0.0193827); expected 273.4 (0.02)
Passed bias filter:                      239  (0.017481); expected 273.4 (0.02)
Passed Vit filter:                        19  (0.0013897); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.38s 00:00:00.79 Elapsed: 00:00:00.66
# Mc/sec: 490.16
//
Query:       MMETSP0890-20130614|41854_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-14   54.7   0.1    2.5e-14   53.6   0.0    1.5  1  PF12697.2  Alpha/beta hydrolase family
    7.9e-06   25.5   0.0    2.3e-05   24.0   0.0    1.9  1  PF12695.2  Alpha/beta hydrolase family
     0.0032   16.9   0.0     0.0059   16.0   0.0    1.4  1  PF00561.15 alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   5.5e-18   2.5e-14      26     224 ..      31     300 ..      25     304 .. 0.67

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 5.5e-18
                  EEEEE-----------S......S--HHHHHHHHHHHHHH--........--EEEE--------HHHHHH----.EEEEEEE------STT.........................---TTHHHHHHHHHH----....--H..HHHHH-----HHHHHH--GGGG....GG..........------HHHHTT-.....-S-EEEEE-----HHH...HHHH.......................HHHHHHSTTE.....EEEE---SSSS-...-HHH CS
    PF12697.2  26 rvvapDlpGhGrSdrppd...ydpdtledlaadlaalldalgl.......rpvvlvGHSlGgavalaaaarrpdlvrglvlidppgplpas.........................alrpagpsllrrllagraaalrdlaarafarlfdgdelealvradaaalaellraa..........lldadlrealarl.....dvPvlviageaDrvvp...peea.......................rrlaealpga.....rvvvlpgagHllfleapde 224
                   v+a+D+ GhG ++  +    yd   +e+  +d++++l    +       +p+v vGHS G+ +   +  + p+ ++glv+ +p +  ++                           lrp+ +s  r+l +++a+        ++++ ++++ l+a+++   +a++++ ++            +++ ++ +l r+     ++P+ + ag+++ v +   p+e+                       r++ +++p+a      + v++ a H++++e+p  
  MMETSP0890-20130614|41854_1  31 KVIALDWCGHGKTSTVNKlekYDESWCEQAMSDIREVLGCEAIlrdgkptEPIVGVGHSIGCTILVDLETKSPETFKGLVFFEPIIKPCRLldfdepnfmlgaeslaqqveqrnfqHLRPPLSSVGRQLRGSGAFG-------GIFEKWHDHALDAFAQ---RAFITYNNEIrsrcptrfeaCTFRTAPYLLYRIdhtqiTCPIAIAAGAHSNVFAhaaPSEIrrlpdaslqimaavaqecqkpasRHVLRGVPRAawrfpHLAVVSRATHFIPMEQPTW 300
                  69***********99887555666556999999999995544456788889***********************************88888**9999988888887777766666555544455555554443332.......2333333444444433...333333333244455555553333333344443333448************665444333344444445555555555555555888888887767666778999**********986 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     5e-09   2.3e-05      27      92 ..      30     122 ..      22     292 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 5e-09
    PF12695.2  27 favvavdlpghgasegaa...............aakrvl.........aadlldleriilvGhSlGGgvalelagrd.drvkglvllapf......p 92 
                  + v+a+d+ ghg+++ ++               +    +          +d + +e+i+ vGhS+G ++ + l  +  + +kglv+++p+       
  MMETSP0890-20130614|41854_1  30 VKVIALDWCGHGKTSTVNklekydeswceqamsD----IrevlgceaiLRDGKPTEPIVGVGHSIGCTILVDLETKSpETFKGLVFFEPIikpcrlL 122
                  679999*******988884444445554444443....05555877774555689********************9999**********53332331 PP

>> PF00561.15  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06    0.0059       2     194 ..      31     240 ..      30     258 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.3e-06
                  EEEEEE--------E........S.GGGGSHHHHHHHH..HHHHHHSTSSS.EEEEE-B---HHHHHHHHHCGGGEEEEEEESB--....HHSHCSHSTTCHCHHHHHHHHCCHHHHHHHHHHHCSCCCHHH......CHHHHHHCHCCCCCHHHHHHHHHTECCHCCHCCECHCHHHHHHHHHCCHHHT.....-TSSEEEEECCTTSCCHHCHH CS
   PF00561.15   2 dviglDlrGvgySspa.....ggpelphyttddlardl..eavldalglkk.ltlvGhSmGGmialayaaeypdrvkamvllgtva....vlsdglssdvlnrgstltlladnvagrlskgikplqgdasvq......aqsllrpqvtdflkrfdansyaregetraldgkllaalgrdlvwdvtetlkt.....ilvptlvisgtdDplvpykas 194
                  +vi+lD+ G+g++s+      + + + +  + d+++ l  ea+l+  + ++ ++ vGhS G++i   +  + p+ +k++v+ +++      l++  ++ +l ++s+ +++++  +++l+ + ++ + + ++       ++ ++ +++ +f +r+    y +  e r+ +++++   + + +   +  l +     i++p+ ++ g + +++   a 
  MMETSP0890-20130614|41854_1  31 KVIALDWCGHGKTSTVnklekYDESWCEQAMSDIREVLgcEAILRDGKPTEpIVGVGHSIGCTILVDLETKSPETFKGLVFFEPIIkpcrLLDFDEPNFMLGAESLAQQVEQRNFQHLRPPLSSVGRQLRGSgafggiFEKWHDHALDAFAQRAF-ITYNN--EIRSRCPTRF---EACTFRTAPYLLYRidhtqITCPIAIAAGAHSNVFAHAAP 240
                  69************87788888888888888888887755667777777779********************************98999855555555555556666677777777777777777777774344444444444443333333333.22222..3334444444...5555555555555566777888888888888888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       321  (0.0234786); expected 273.4 (0.02)
Passed bias filter:                      307  (0.0224547); expected 273.4 (0.02)
Passed Vit filter:                        28  (0.00204798); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.63
# Mc/sec: 1224.80
//
Query:       MMETSP0890-20130614|41861_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       212  (0.0155061); expected 273.4 (0.02)
Passed bias filter:                      196  (0.0143359); expected 273.4 (0.02)
Passed Vit filter:                         7  (0.000511995); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.37s 00:00:00.91 Elapsed: 00:00:00.68
# Mc/sec: 947.97
//
Query:       MMETSP0890-20130614|41859_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-08   32.7   1.0      8e-08   31.8   0.7    1.5  1  PF13967.1 Late exocytosis, associated with Golgi transport


Domain annotation for each model (and alignments):
>> PF13967.1  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.7   5.9e-12     8e-08      69     153 ..      68     147 ..       7     151 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 5.9e-12
    PF13967.1  69 lqsaGLDAyvflrflkmgikiflvlavlallvLlPvnatggedekkkaskegldklsisnveegssrlwahlvfayvf.tglvlyl 153
                  l+ + L Ay+flr+l+m++ + +v+++l+ + L  ++ + +e+       +++d+ + s v++g++++w  + f +++ ++ +l l
  MMETSP0890-20130614|41859_1  68 LNFVDLEAYLFLRMLRMCMSLSVVASILVTPSLCVLYSKYSESG------NTFDRWTSSYVPKGNHFYWWGAAFGVFIlVIQTLRL 147
                  6667789******************************9999888......479*************99988777666514455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       730  (0.0533938); expected 273.4 (0.02)
Passed bias filter:                      466  (0.0340843); expected 273.4 (0.02)
Passed Vit filter:                        41  (0.00299883); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.36s 00:00:01.14 Elapsed: 00:00:00.82
# Mc/sec: 1224.48
//
Query:       MMETSP0890-20130614|41867_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   14.5   2.3      0.016   14.3   1.6    1.0  1  PF01991.13 ATP synthase (E/31 kDa) subunit
      0.032   13.5   0.4      0.034   13.4   0.3    1.0  1  PF00667.15 FAD binding domain
      0.057   12.7   0.4      0.062   12.6   0.3    1.0  1  PF13862.1  p21-C-terminal region-binding protein
      0.075   12.6   0.8      0.095   12.3   0.6    1.2  1  PF10719.4  Late competence development protein ComFB


Domain annotation for each model (and alignments):
>> PF01991.13  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.6   4.8e-06     0.016      67     110 ..       7      49 ..       3      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.8e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   PF01991.13  67 LkareelleevleeakkeLaevsedkeeYkellkeLivqalvkl 110
                   +++eel+++v++ + + L++ + d+ e ++ l++L+ q lv  
  MMETSP0890-20130614|41867_1   7 VNVQEELVQAVKNMLLQLLKKYAMDH-EDQNHLHDLVTQQLVLT 49 
                  689**********************7.99**********99855 PP

>> PF00667.15  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3     1e-05     0.034     104     136 ..      12      44 ..       3      54 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1e-05
   PF00667.15 104 eitgpptkqllealaelaseeeekqeLeaLvsd 136
                  e+++++++ ll+ l ++a + e++++L++Lv++
  MMETSP0890-20130614|41867_1  12 ELVQAVKNMLLQLLKKYAMDHEDQNHLHDLVTQ 44 
                  8999***************************97 PP

>> PF13862.1  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   1.8e-05     0.062      10      46 ..       7      46 ..       2      52 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
    PF13862.1 10 fdpeekdfhgiknLLrqlfld...teidlseLadlileqn 46
                 ++++e+ ++++kn+L ql+++    + d + L dl+ +q 
  MMETSP0890-20130614|41867_1  7 VNVQEELVQAVKNMLLQLLKKyamDHEDQNHLHDLVTQQL 46
                 57788999************95555566677999999985 PP

>> PF10719.4  Late competence development protein ComFB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   2.8e-05     0.095       2      35 ..       7      43 ..       6      52 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
    PF10719.4  2 hNymEelVleeldkvl...ekleekckcedclaDiaa 35
                 +N+ EelV+ + + +l   +k+ ++ ++++ l+D+++
  MMETSP0890-20130614|41867_1  7 VNVQEELVQAVKNMLLqllKKYAMDHEDQNHLHDLVT 43
                 69****98766665555559999999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       960  (0.0702165); expected 273.4 (0.02)
Passed bias filter:                      737  (0.0539058); expected 273.4 (0.02)
Passed Vit filter:                        54  (0.00394968); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.42s 00:00:00.77 Elapsed: 00:00:00.83
# Mc/sec: 158.79
//
Query:       MMETSP0890-20130614|41870_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       357  (0.0261118); expected 273.4 (0.02)
Passed bias filter:                      262  (0.0191633); expected 273.4 (0.02)
Passed Vit filter:                        23  (0.00168227); expected 13.7 (0.001)
Passed Fwd filter:                         0  (0); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.38s 00:00:01.10 Elapsed: 00:00:01.21
# Mc/sec: 867.44
//
Query:       MMETSP0890-20130614|41871_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-15   54.6   0.3    1.4e-09   37.4   0.0    2.2  2  PF04641.7  Replication termination factor 2
    2.2e-06   27.0   0.5     0.0019   17.6   0.0    3.3  3  PF13445.1  RING-type zinc-finger, LisH dimerisation motif
    0.00034   20.3   2.2      0.011   15.5   0.0    3.3  3  PF04564.10 U-box domain
  ------ inclusion threshold ------
      0.012   15.0   0.1       0.66    9.4   0.0    2.6  3  PF11789.3  Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> PF04641.7  Replication termination factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-06    0.0076      28      84 ..      23      81 ..       6     113 .. 0.72
   2 !   37.4   0.0   4.1e-13   1.4e-09      85     170 ..     178     262 ..     169     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.2e-06
    PF04641.7 28 eekearwklCaLskepLekPivadrlGkLYnkdavleaLldkske.ealskals..hikg 84
                 +  +  + +CaLs +p e+P+v    G++Y+ + +le++  k +e ++  ++ +  +i  
  MMETSP0890-20130614|41871_1 23 ADSQLPFGFCALSLQPAEDPVVT-PSGHIYSRQYLLEHMSTKVNElKRRRDEWEttKIAE 81
                 344556889***********997.67*************999877666555544345555 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 4.1e-13
    PF04641.7  85 lkdvvelkltknpaeeeskaarkdtkeapfiCpvtglelngktkfvalrkcGcVfsekalkevk..eekvCpvCnkefkeedvvplnp 170
                  +kd++ + l+k++ ++++  +++d+++ +f+C v++ e++ ++  +++r+ GcV+ ++    ++  ++k+Cp+++++f ++dv +l  
  MMETSP0890-20130614|41871_1 178 MKDLIPISLHKSQTQKAT--TTCDASDIRFLCHVSRNEIT-NQPVLFIRTTGCVVIQEVATRLRilQSKICPITGRTFRSKDVLTLAT 262
                  9*********99755544..59****************97.56899*********999888888888****************99875 PP

>> PF13445.1  RING-type zinc-finger, LisH dimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.5e-07    0.0019      13      48 ..      32      64 ..      28      73 .. 0.78
   2 ?    3.7   0.7     0.012        41      10      38 ..     204     232 ..     199     247 .. 0.73
   3 ?    1.4   0.0     0.062   2.1e+02       9      21 ..     242     254 ..     233     259 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.5e-07
                 -TTT-S.-SS....EEEES---EEEHHHHHHHHHHHH CS
    PF13445.1 13 Cpiske.qsteqnpPvvLpCGhvisrealeklakggr 48
                 C  s +   +    Pvv p Gh++sr+ l + ++++ 
  MMETSP0890-20130614|41871_1 32 CALSLQpAED----PVVTPSGHIYSRQYLLEHMSTKV 64
                 7777777755....**************999887544 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.012
                  X-B-TTT-S-SS....EEE.ES.---EEEHH CS
    PF13445.1  10 ifaCpiskeqsteqnpPvv.Lp.CGhvisre 38 
                  +f C +s+   t  n+Pv+ ++  G+v+ +e
  MMETSP0890-20130614|41871_1 204 RFLCHVSRNEIT--NQPVLfIRtTGCVVIQE 232
                  79*******557..89996344588887665 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.062
                  XX-B-TTT-S.-SS CS
    PF13445.1   9 sifaCpiske.qst 21 
                  s  +Cpi++  + +
  MMETSP0890-20130614|41871_1 242 SK-ICPITGRtFRS 254
                  44.8****987765 PP

>> PF04564.10  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.2e-06     0.011      15      37 ..      40      62 ..      31      96 .. 0.84
   2 ?    0.5   0.6      0.15     5e+02      39      58 ..     166     185 ..     145     193 .. 0.77
   3 ?    1.2   0.0      0.09   3.1e+02      12      55 ..     213     259 ..     204     263 .. 0.56

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.2e-06
                 SSEEE-TTT-EEEHHHHHHHHTT CS
   PF04564.10 15 kdPvilPsgitvDrstiekhlls 37
                  dPv++Psg+++ r+ + +h+  
  MMETSP0890-20130614|41871_1 40 EDPVVTPSGHIYSRQYLLEHMST 62
                 79******************987 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.15
                  SSB-TTT-SB--GGGSEE-H CS
   PF04564.10  39 dktdPftreplteeelipnl 58 
                   + +P+t +pl +++lip +
  MMETSP0890-20130614|41871_1 166 RPPSPITGTPLRMKDLIPIS 185
                  5779************9965 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.09
                  SB-SSEE..E-TTT-EEEHHHHHHHHTT.SSB-TTT.-SB--GGGSE CS
   PF04564.10  12 elmkdPv..ilPsgitvDrstiekhllsrdktdPft.replteeeli 55 
                  e+  +Pv  i   g +v ++  ++    ++k +P+t r++ +++ l+
  MMETSP0890-20130614|41871_1 213 EITNQPVlfIRTTGCVVIQEVATRLRILQSKICPITgRTFRSKDVLT 259
                  56666662233555444444333332223699****88888887776 PP

>> PF11789.3  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00019      0.66      14      45 ..      32      62 ..      24      78 .. 0.85
   2 ?   -3.6   0.0       2.2   7.4e+03      10      23 ..     203     216 ..     199     220 .. 0.66
   3 ?    2.5   0.0     0.026        90      10      22 ..     241     253 ..     231     254 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00019
                 -TTT-SB-SSEEEES----EEEHHHHHHHHTT CS
    PF11789.3 14 CpltlkpfkePvtskkCnHvFEkeaIlkmlkr 45
                 C l+l+p ++Pv      H++ ++ +l+++++
  MMETSP0890-20130614|41871_1 32 CALSLQPAEDPVVT-PSGHIYSRQYLLEHMST 62
                 ************86.569********999833 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.2
                  XX-B-TTT-SB-SS CS
    PF11789.3  10 islkCpltlkpfke 23 
                  i   C ++++++++
  MMETSP0890-20130614|41871_1 203 IRFLCHVSRNEITN 216
                  56678888887753 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.026
                  XX-B-TTT-SB-S CS
    PF11789.3  10 islkCpltlkpfk 22 
                  +s+ Cp+t ++f+
  MMETSP0890-20130614|41871_1 241 QSKICPITGRTFR 253
                  5677999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       479  (0.0350351); expected 273.4 (0.02)
Passed bias filter:                      356  (0.0260386); expected 273.4 (0.02)
Passed Vit filter:                        27  (0.00197484); expected 13.7 (0.001)
Passed Fwd filter:                         4  (0.000292569); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.44s 00:00:01.04 Elapsed: 00:00:00.81
# Mc/sec: 855.00
//
Query:       MMETSP0890-20130614|41879_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00098   18.6   0.0     0.0018   17.7   0.0    1.4  1  PF07676.7 WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PF07676.7  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-07    0.0018       3      27 ..       9      33 ..       8      35 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.3e-07
                 E--SSSS-EEEEEE-----EEEEEE CS
    PF07676.7  3 qltnssgkngePawSPDGkkivFtS 27
                 q+++ s    +P+wSPDGk + F S
  MMETSP0890-20130614|41879_1  9 QVVSASRLARSPSWSPDGKFLCFLS 33
                 56666777789************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       219  (0.0160181); expected 273.4 (0.02)
Passed bias filter:                      215  (0.0157256); expected 273.4 (0.02)
Passed Vit filter:                        12  (0.000877706); expected 13.7 (0.001)
Passed Fwd filter:                         1  (7.31422e-05); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.94
# Mc/sec: 695.96
//
Query:       MMETSP0890-20130614|41885_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-41  142.2   0.0    2.1e-41  141.5   0.0    1.4  1  PF00749.16 tRNA synthetases class I (E and Q), catalytic domain
    8.6e-27   93.8   0.0    1.4e-26   93.0   0.0    1.4  1  PF03950.13 tRNA synthetases class I (E and Q), anti-codon binding domain


Domain annotation for each model (and alignments):
>> PF00749.16  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0     3e-45   2.1e-41     139     302 ..       5     169 ..       1     181 [. 0.90

  Alignments for each domain:
  == domain 1    score: 141.5 bits;  conditional E-value: 3e-45
                  H-----EEEE-S-TT-S.CCCSCSCEEEEEESGGGS-S-EEE--SEEE-HHHHHHHHHHH----EEEEEGGGCCCHHHHHHHHHC.S...S-S--EEEEEE--B-CTTSB-SCCCCHHCHHCCCHHH---TCCCCHHHHHT----HHHHHHHHHHHHHHCCS-GGC-HH CS
   PF00749.16 139 aegekavlRlkideesp.vemrDlvrgrikfepselhdlvllksdgyPtYdfavvidDalmeiThvlrgeeflantpkyiwllea.l...glevppfahlslllnlegkklSKRklsllvdislvkeegdlreallnflarlGwspeaeeefltreeliksfdlnresk 302
                   +++ avlR+k+d++sp  ++rD+  +rik+ +   h+++++++ +yP+Yd+a++i+Da+++iTh+l++ ef + +p y+w++++ +   ++  +p + ++++lnl+++  SKRkl+ lv++++v++++d+r++++++l+ +G++p+a++ f++r +++k + +  e +
  MMETSP0890-20130614|41885_1   5 LNDGDAVLRAKLDMSSPnLNLRDPALYRIKNLH---HQRTGSTWSIYPMYDYAHAISDAIEGITHSLCTLEFENHRPLYDWVVDQyIkyaTITNKPKQIEFSRLNLQHTITSKRKLASLVNAQYVQGWDDPRMPTIRGLRTRGIPPAAIRLFCQRIGISKVD-TRLEPS 169
                  568899***************************...*********************************************98642411156679**************************************************************99987.655555 PP

>> PF03950.13  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   2.1e-30   1.4e-26       2     173 ..     186     375 ..     185     376 .. 0.89

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 2.1e-30
   PF03950.13   2 pRymaVldpvkvtienlpegkeeelevplhpknpelgerevpfskeiyiereD.............akrlkp..geevrLkelynikveevekde.sgevtelkleydgesleea.......rkkkgiihWvsaeeaveaevrlYdrLfkeed.dedfllnpdslkvleeglaepalan.lkkgdivQfeRiGYfrv 173
                  pR++aV++p++++ +       ee++ + h ++    e    ++++ yier+D             +kr+++  g+ vrL+++y+i++ +v++d  ++e +++++++d+e+++++       +k+ giihW+ +++av++ +  YdrLf ++d +e +  np+s   ++++l+e+ + + l+ g+ +QfeR+GY+++
  MMETSP0890-20130614|41885_1 186 PRAFAVIEPLEIIFS-------EEIHQQIHVSQDRILEFCSGINEKYYIERADfwdtqtqgeipkdWKRFSDdqGSLVRLRYAYVIECLKVDRDPeTNEPIRIHCQIDPETFAGKpttkrskKKQPGIIHWLRETDAVQIPLIHYDRLFLNPDpTELDEPNPNSMIRYNQALVEKRAVDiLNNGEPFQFERQGYYVF 375
                  8************99.......68999999997777777777788*********************77766422799***************9997888888**********999****98444445***********************999887778******999******9876637999**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       249  (0.0182124); expected 273.4 (0.02)
Passed bias filter:                      226  (0.0165301); expected 273.4 (0.02)
Passed Vit filter:                        15  (0.00109713); expected 13.7 (0.001)
Passed Fwd filter:                         2  (0.000146284); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:01.09
# Mc/sec: 1332.29
//
Query:       MMETSP0890-20130614|41890_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0081   16.1   1.4       0.14   12.1   0.0    2.6  2  PF14389.1  Leucine-zipper of ternary complex factor MIP1
  ------ inclusion threshold ------
      0.019   13.9   1.4      0.029   13.3   1.0    1.2  1  PF01709.15 Transcriptional regulator
       0.13   12.5   3.4       0.52   10.5   0.3    2.5  3  PF02465.13 Flagellar hook-associated protein 2 C-terminus


Domain annotation for each model (and alignments):
>> PF14389.1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     3e-05      0.14      54      82 ..     129     157 ..     114     162 .. 0.84
   2 ?    1.7   0.6     0.054   2.4e+02      16      40 ..     198     219 ..     178     248 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
    PF14389.1  54 kkakellkeiavlEaevskLEqqllsLyr 82 
                  +ka ++ +ei v+E+ v++L+q+ +sL  
  MMETSP0890-20130614|41890_1 129 EKASNDDEEIKVAESQVVHLKQRYDSLNA 157
                  56777779******************986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.054
    PF14389.1  16 eVkkLqkqLqdeekvreaLekalgr 40 
                  eV +L++ Lq    + ++Le+a ++
  MMETSP0890-20130614|41890_1 198 EVNRLKTSLQ---MLECTLEEASSE 219
                  6777777776...356666666665 PP

>> PF01709.15  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.0   6.4e-06     0.029     129     206 ..     151     229 ..     137     240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.4e-06
                  CEEEEEEEEEEHCCS-HHHHHHHHCC-.---EEEEE.TTEEEEE--GGGHHHHHHHHCTTT---SEEEEEEEESS-EE-- CS
   PF01709.15 129 lFekkgvieikkeeadedelleaalea.gaedveee.desievitepedlekvkkaLeeagleieeaeleliPkntvevd 206
                   ++    i+i+  + de++l e+a++   a+d++   +++++v  + ++++++k++L+  + ++eea  e +P n+ + +
  MMETSP0890-20130614|41890_1 151 RYDSLNAIVIE-GNSDEEDLDEDAVDTyLAQDIAALtEKQFHVKEQLSEVNRLKTSLQMLECTLEEASSEKRPFNELDPN 229
                  56777788898.99************559****9654899******************************9999987764 PP

>> PF02465.13  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.048   2.2e+02      87      99 .]      10      22 ..       3      22 .. 0.86
   2 ?   -3.6   0.0         3   1.4e+04      26      41 ..     133     148 ..     125     158 .. 0.49
   3 ?   10.5   0.3   0.00011      0.52      20      70 ..     181     232 ..     162     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.048
   PF02465.13 87 ysieVkqLAqaak 99
                  ++eV++LAq ak
  MMETSP0890-20130614|41890_1 10 CTVEVTNLAQVAK 22
                 58********986 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3
   PF02465.13  26 qqeqkleaklsaygtl 41 
                  +  ++++   s++  l
  MMETSP0890-20130614|41890_1 133 NDDEEIKVAESQVVHL 148
                  4444444444444444 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00011
   PF02465.13  20 pldrlkqqeqkleaklsaygtlksalsdlqsalkalksts.afntkkatssn 70 
                   +++l++++  ++ +ls+++ lk++l+ l  +l++ +s++  fn+   ++s 
  MMETSP0890-20130614|41890_1 181 DIAALTEKQFHVKEQLSEVNRLKTSLQMLECTLEEASSEKrPFNELDPNASA 232
                  44899****************************9998875688876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       738  (0.0539789); expected 273.4 (0.02)
Passed bias filter:                      460  (0.0336454); expected 273.4 (0.02)
Passed Vit filter:                        34  (0.00248683); expected 13.7 (0.001)
Passed Fwd filter:                         3  (0.000219427); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.36s 00:00:00.94 Elapsed: 00:00:00.94
# Mc/sec: 683.22
//
Query:       MMETSP0890-20130614|41900_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0068   16.0   0.0     0.0095   15.5   0.0    1.2  1  PF05728.7  Uncharacterised protein family (UPF0227)
     0.0091   15.6   0.0     0.0097   15.5   0.0    1.2  1  PF12695.2  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.015   14.5   0.0    1.2  1  PF00756.15 Putative esterase
      0.021   14.2   0.0      0.026   13.9   0.0    1.2  1  PF01764.20 Lipase (class 3)
      0.026   14.3   0.1      0.029   14.1   0.0    1.2  1  PF12697.2  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PF05728.7  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.5e-06    0.0095      40     100 ..      24      92 ..       8     101 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.5e-06
    PF05728.7  40 edpqqalkeleklvaelgddn..illvGssLGGyyatrlgerfglrq......vllnPalkplenlagk 100
                   +p+ ++  + + +a+   ++  il+vG s+GG+ a  lg++f  r+        +nP ++  ++  + 
  MMETSP0890-20130614|41900_1  24 TNPAIVADSVLSFLAQRDLEAseILVVGASMGGFGALLLGALFATRNkiptsvLAFNPQTFLGQHQLNA 92 
                  55666666777777765544455********************99987777755688888776665555 PP

>> PF12695.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.5e-06    0.0097      44      78 ..      31      93 ..       7     164 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.5e-06
    PF12695.2 44 aaakrvlaadll.dleriilvGhSlGGgvalelag............................r 78
                 + + ++l a+++ ++++i +vG S+GG  al+l +                             
  MMETSP0890-20130614|41900_1 31 DSVLSFL-AQRDlEASEILVVGASMGGFGALLLGAlfatrnkiptsvlafnpqtflgqhqlnaI 93
                 4566677.77778999***************998888875444444444444444444444440 PP

>> PF00756.15  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.6e-06     0.015     105     134 ..      36      64 ..      27     125 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.6e-06
                  HHHHHH-B----EEEE--THHHHHHHHHHH CS
   PF00756.15 105 lldanfrtapdgravaGqSmGGlgALilal 134
                  +l+++   a++   v+G+SmGG+gAL+l++
  MMETSP0890-20130614|41900_1  36 FLAQRDLEASE-ILVVGASMGGFGALLLGA 64 
                  55544444444.89************9875 PP

>> PF01764.20  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.5e-06     0.026      48     116 ..      31      95 ..       1     108 [. 0.65

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.5e-06
                  HHHHHHHHHHHHHST..TSEEEEE-------HHHHHHHHHHHT-...TTTEEEEEES-S--.--HHHHHHHH CS
   PF01764.20  48 eqvlkelkrllekyp..dykivvtGHSLGGalAlLaaadlaenglnksslvtvytfGqPrv.gnkefaelve 116
                  ++vl+ l++          +i v+G S+GG  AlL++a +a ++   + + +v++f      g +++   ++
  MMETSP0890-20130614|41900_1  31 DSVLSFLAQ----RDleASEILVVGASMGGFGALLLGALFATRN---KIPTSVLAFNPQTFlGQHQLNAIHD 95 
                  444444444....2222358*********************977...4788888885322235555555555 PP

>> PF12697.2  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.029      50     125 ..      27     107 ..       7     178 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHHH--...--EEEE--------HHHHHH-...---.EEEEEEE------STT......---TTHHHHHHHHHH---- CS
    PF12697.2  50 edlaadlaalldalgl..rpvvlvGHSlGgavalaaaar...rpdlvrglvlidppgplpas......alrpagpsllrrllagraa 125
                  +  a+ ++ +l++ +l   ++ +vG S+Gg+ al++ a+   r +   ++++ +p  +l                  +++l+a+ ++
  MMETSP0890-20130614|41900_1  27 AIVADSVLSFLAQRDLeaSEILVVGASMGGFGALLLGALfatRNKIPTSVLAFNPQTFLGQHqlnaihD------NRWPDLFAAMHQ 107
                  44688899999998886679**********999998877332444778888999888766654443330......333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                       13672  (2396357 nodes)
Passed MSV filter:                       256  (0.0187244); expected 273.4 (0.02)
Passed bias filter:                      248  (0.0181393); expected 273.4 (0.02)
Passed Vit filter:                        26  (0.0019017); expected 13.7 (0.001)
Passed Fwd filter:                         5  (0.000365711); expected 0.1 (1e-05)
Initial search space (Z):              13672  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.42s 00:00:00.87 Elapsed: 00:00:00.83
# Mc/sec: 528.35
//
Query:       MMETSP0890-20130614|41909_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-13   49.3   0.0    6.7e-13   48.4   0.0    1.4  1  PF00587.20 tRNA synthetase class II core domain (G, H, P, S and T)
  ------ inclusion threshold ------
      0.012   14.7   1.9      0.017   14.2   1.3    1.2  1  PF05929.6  Phage capsid scaffolding protein (GPO) serine peptidase
      0.041   
[file cut: first 33554432 bytes kept]
[document cut: first 32366646 of 33554432 characters kept]
